#transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType MGP_C57BL6NJ_T0005861.1 MGP_C57BL6NJ_G0004928.1 mouse_genomes_project 1 42965178 42992623 - Gm28140 lincRNA lincRNA MGP_C57BL6NJ_T0022881.1 MGP_C57BL6NJ_G0016950.1 mouse_genomes_project 1 147302976 147318701 + MGP_C57BL6NJ_P0022881 Atp6v1g3 protein_coding protein_coding MGP_C57BL6NJ_T0012481.1 MGP_C57BL6NJ_G0010526.1 mouse_genomes_project 1 115249730 115251599 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023766.1 MGP_C57BL6NJ_G0017126.1 mouse_genomes_project 1 181474156 181627057 - MGP_C57BL6NJ_P0023766 Ddr2 protein_coding protein_coding MGP_C57BL6NJ_T0023767.1 MGP_C57BL6NJ_G0017126.1 mouse_genomes_project 1 181474157 181599238 - MGP_C57BL6NJ_P0023767 Ddr2 protein_coding protein_coding MGP_C57BL6NJ_T0023768.1 MGP_C57BL6NJ_G0017126.1 mouse_genomes_project 1 181479720 181626997 - MGP_C57BL6NJ_P0023768 Ddr2 protein_coding protein_coding MGP_C57BL6NJ_T0023769.1 MGP_C57BL6NJ_G0017126.1 mouse_genomes_project 1 181508940 181627225 - MGP_C57BL6NJ_P0023769 Ddr2 protein_coding protein_coding MGP_C57BL6NJ_T0023770.1 MGP_C57BL6NJ_G0017126.1 mouse_genomes_project 1 181543664 181627258 - Ddr2 protein_coding retained_intron MGP_C57BL6NJ_T0023024.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160474799 160490986 - MGP_C57BL6NJ_P0023024 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023025.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160474799 160490986 - MGP_C57BL6NJ_P0023025 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023026.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160474799 160490986 - MGP_C57BL6NJ_P0023026 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023027.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160474799 160490986 - MGP_C57BL6NJ_P0023027 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023028.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160475203 160491553 - MGP_C57BL6NJ_P0023028 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023029.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160475256 160491553 - MGP_C57BL6NJ_P0023029 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023030.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160481384 160491553 - MGP_C57BL6NJ_P0023030 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0023031.1 MGP_C57BL6NJ_G0016980.1 mouse_genomes_project 1 160483579 160491553 - MGP_C57BL6NJ_P0023031 Prg4 protein_coding protein_coding MGP_C57BL6NJ_T0022249.1 MGP_C57BL6NJ_G0016816.1 mouse_genomes_project 1 129139039 129156846 - MGP_C57BL6NJ_P0022249 Ddx18 protein_coding protein_coding MGP_C57BL6NJ_T0022250.1 MGP_C57BL6NJ_G0016816.1 mouse_genomes_project 1 129142096 129146165 - Ddx18 protein_coding retained_intron MGP_C57BL6NJ_T0022251.1 MGP_C57BL6NJ_G0016816.1 mouse_genomes_project 1 129144354 129147209 - MGP_C57BL6NJ_P0022251 Ddx18 protein_coding protein_coding MGP_C57BL6NJ_T0022252.1 MGP_C57BL6NJ_G0016816.1 mouse_genomes_project 1 129153452 129156579 - Ddx18 protein_coding processed_transcript MGP_C57BL6NJ_T0003076.1 MGP_C57BL6NJ_G0002883.1 mouse_genomes_project 1 172968763 172980216 + 2810442N19Rik antisense antisense MGP_C57BL6NJ_T0003077.1 MGP_C57BL6NJ_G0002883.1 mouse_genomes_project 1 172968966 172980225 + 2810442N19Rik antisense antisense MGP_C57BL6NJ_T0005889.1 MGP_C57BL6NJ_G0004943.1 mouse_genomes_project 1 53371819 53373396 - Gm28055 lincRNA lincRNA MGP_C57BL6NJ_T0005890.1 MGP_C57BL6NJ_G0004943.1 mouse_genomes_project 1 53372620 53421224 - Gm28055 lincRNA lincRNA MGP_C57BL6NJ_T0003060.1 MGP_C57BL6NJ_G0002868.1 mouse_genomes_project 1 162048019 162060001 + Gm28610 antisense antisense MGP_C57BL6NJ_T0009662.1 MGP_C57BL6NJ_G0007747.1 mouse_genomes_project 1 28763538 28763634 - Gm23785 miRNA miRNA MGP_C57BL6NJ_T0023280.1 MGP_C57BL6NJ_G0017028.1 mouse_genomes_project 1 167047588 167122995 + MGP_C57BL6NJ_P0023280 Abl2 protein_coding protein_coding MGP_C57BL6NJ_T0023281.1 MGP_C57BL6NJ_G0017028.1 mouse_genomes_project 1 167047789 167149537 + MGP_C57BL6NJ_P0023281 Abl2 protein_coding protein_coding MGP_C57BL6NJ_T0023282.1 MGP_C57BL6NJ_G0017028.1 mouse_genomes_project 1 167047851 167142685 + MGP_C57BL6NJ_P0023282 Abl2 protein_coding protein_coding MGP_C57BL6NJ_T0023283.1 MGP_C57BL6NJ_G0017028.1 mouse_genomes_project 1 167113601 167128774 + MGP_C57BL6NJ_P0023283 Abl2 protein_coding protein_coding MGP_C57BL6NJ_T0021283.1 MGP_C57BL6NJ_G0016596.1 mouse_genomes_project 1 83516076 83585669 - MGP_C57BL6NJ_P0021283 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021284.1 MGP_C57BL6NJ_G0016596.1 mouse_genomes_project 1 83516417 83585672 - MGP_C57BL6NJ_P0021284 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000810.1 MGP_C57BL6NJ_G0000724.1 mouse_genomes_project 1 161169786 161171882 + TEC TEC MGP_C57BL6NJ_T0022502.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140698362 140771337 + MGP_C57BL6NJ_P0022502 Lemd1 protein_coding protein_coding MGP_C57BL6NJ_T0022503.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140698386 140769492 + MGP_C57BL6NJ_P0022503 Lemd1 protein_coding protein_coding MGP_C57BL6NJ_T0022504.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140698388 140716531 + Lemd1 protein_coding processed_transcript MGP_C57BL6NJ_T0022505.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140707926 140712768 + Lemd1 protein_coding processed_transcript MGP_C57BL6NJ_T0022506.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140710836 140711494 + Lemd1 protein_coding processed_transcript MGP_C57BL6NJ_T0022507.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140734056 140769299 + MGP_C57BL6NJ_P0022507 Lemd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022508.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140734085 140769119 + MGP_C57BL6NJ_P0022508 Lemd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022509.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140737049 140738484 + Lemd1 protein_coding retained_intron MGP_C57BL6NJ_T0022510.1 MGP_C57BL6NJ_G0016871.1 mouse_genomes_project 1 140737049 140769144 + MGP_C57BL6NJ_P0022510 Lemd1 protein_coding protein_coding MGP_C57BL6NJ_T0000837.1 MGP_C57BL6NJ_G0000751.1 mouse_genomes_project 1 170092678 170093084 - TEC TEC MGP_C57BL6NJ_T0021309.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84483677 84765111 - MGP_C57BL6NJ_P0021309 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021310.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84483792 84594452 - MGP_C57BL6NJ_P0021310 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021311.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84484157 84672400 - MGP_C57BL6NJ_P0021311 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021312.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84484245 84514392 - MGP_C57BL6NJ_P0021312 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021313.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84484317 84672366 - MGP_C57BL6NJ_P0021313 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021314.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84485495 84488913 - Dock10 protein_coding retained_intron MGP_C57BL6NJ_T0021315.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84504467 84506351 - Dock10 protein_coding retained_intron MGP_C57BL6NJ_T0021316.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84583857 84765190 - Dock10 protein_coding retained_intron MGP_C57BL6NJ_T0021317.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84587938 84712116 - MGP_C57BL6NJ_P0021317 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021318.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84594220 84672383 - MGP_C57BL6NJ_P0021318 Dock10 protein_coding protein_coding MGP_C57BL6NJ_T0021319.1 MGP_C57BL6NJ_G0016602.1 mouse_genomes_project 1 84651042 84765150 - Dock10 protein_coding retained_intron MGP_C57BL6NJ_T0012555.1 MGP_C57BL6NJ_G0010600.1 mouse_genomes_project 1 148043007 148043641 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023743.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179526768 179853434 - MGP_C57BL6NJ_P0023743 Pbx1 protein_coding protein_coding MGP_C57BL6NJ_T0023744.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179563971 179851680 - MGP_C57BL6NJ_P0023744 Pbx1 protein_coding protein_coding MGP_C57BL6NJ_T0023745.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179568732 179851674 - MGP_C57BL6NJ_P0023745 Pbx1 protein_coding protein_coding MGP_C57BL6NJ_T0023746.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179568772 179575053 - Pbx1 protein_coding processed_transcript MGP_C57BL6NJ_T0023747.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179569134 179851428 - MGP_C57BL6NJ_P0023747 Pbx1 protein_coding protein_coding MGP_C57BL6NJ_T0023748.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179618727 179851584 - Pbx1 protein_coding retained_intron MGP_C57BL6NJ_T0023749.1 MGP_C57BL6NJ_G0017120.1 mouse_genomes_project 1 179844388 179851680 - Pbx1 protein_coding retained_intron MGP_C57BL6NJ_T0100898.1 MGP_C57BL6NJ_G0038944.1 mouse_genomes_project 1 114325757 114325889 + Gm22438 snoRNA snoRNA MGP_C57BL6NJ_T0017460.1 MGP_C57BL6NJ_G0015492.1 mouse_genomes_project 1 59117861 59123262 + 9130024F11Rik processed_transcript antisense MGP_C57BL6NJ_T0017461.1 MGP_C57BL6NJ_G0015492.1 mouse_genomes_project 1 59119542 59121673 + 9130024F11Rik processed_transcript antisense MGP_C57BL6NJ_T0017462.1 MGP_C57BL6NJ_G0015492.1 mouse_genomes_project 1 59119544 59202520 + 9130024F11Rik processed_transcript antisense MGP_C57BL6NJ_T0017463.1 MGP_C57BL6NJ_G0015492.1 mouse_genomes_project 1 59120396 59123258 + 9130024F11Rik processed_transcript TEC MGP_C57BL6NJ_T0017464.1 MGP_C57BL6NJ_G0015492.1 mouse_genomes_project 1 59200397 59210089 + 9130024F11Rik processed_transcript antisense MGP_C57BL6NJ_T0023564.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175052823 175105551 - MGP_C57BL6NJ_P0023564 BC055324 protein_coding protein_coding MGP_C57BL6NJ_T0023566.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175060607 175105551 - MGP_C57BL6NJ_P0023566 BC055324 protein_coding protein_coding MGP_C57BL6NJ_T0023567.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175061128 175069766 - MGP_C57BL6NJ_P0023567 BC055324 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023568.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175076237 175082286 - BC055324 protein_coding retained_intron MGP_C57BL6NJ_T0023569.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175097644 175105519 - MGP_C57BL6NJ_P0023569 BC055324 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023570.1 MGP_C57BL6NJ_G0017078.1 mouse_genomes_project 1 175100492 175105296 - BC055324 protein_coding processed_transcript MGP_C57BL6NJ_T0000768.1 MGP_C57BL6NJ_G0000683.1 mouse_genomes_project 1 143148288 143149270 - TEC TEC MGP_C57BL6NJ_T0012423.1 MGP_C57BL6NJ_G0010468.1 mouse_genomes_project 1 92213715 92214664 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009656.1 MGP_C57BL6NJ_G0007741.1 mouse_genomes_project 1 11135750 11135832 + Gm27881 miRNA miRNA MGP_C57BL6NJ_T0012350.1 MGP_C57BL6NJ_G0010395.1 mouse_genomes_project 1 64495477 64495755 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000644.1 MGP_C57BL6NJ_G0000560.1 mouse_genomes_project 1 73404411 73406811 - TEC TEC MGP_C57BL6NJ_T0021545.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889606 91916154 + MGP_C57BL6NJ_P0021545 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021546.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889606 91902298 + MGP_C57BL6NJ_P0021546 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021547.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889606 91916154 + MGP_C57BL6NJ_P0021547 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021548.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889606 91910401 + MGP_C57BL6NJ_P0021548 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021549.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889606 91904547 + MGP_C57BL6NJ_P0021549 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021550.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889631 91902291 + MGP_C57BL6NJ_P0021550 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021551.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889671 91901564 + MGP_C57BL6NJ_P0021551 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0021552.1 MGP_C57BL6NJ_G0016655.1 mouse_genomes_project 1 91889978 91903755 + MGP_C57BL6NJ_P0021552 Eif4e2 protein_coding protein_coding MGP_C57BL6NJ_T0000716.1 MGP_C57BL6NJ_G0000632.1 mouse_genomes_project 1 114871575 114874331 + TEC TEC MGP_C57BL6NJ_T0023335.1 MGP_C57BL6NJ_G0017037.1 mouse_genomes_project 1 168914558 169028296 - MGP_C57BL6NJ_P0023335 Brinp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023336.1 MGP_C57BL6NJ_G0017037.1 mouse_genomes_project 1 168914558 169028393 - MGP_C57BL6NJ_P0023336 Brinp2 protein_coding protein_coding MGP_C57BL6NJ_T0023337.1 MGP_C57BL6NJ_G0017037.1 mouse_genomes_project 1 168971920 168972681 - Brinp2 protein_coding processed_transcript MGP_C57BL6NJ_T0023338.1 MGP_C57BL6NJ_G0017037.1 mouse_genomes_project 1 169024350 169028362 - Brinp2 protein_coding retained_intron MGP_C57BL6NJ_T0000707.1 MGP_C57BL6NJ_G0000623.1 mouse_genomes_project 1 105678277 105680986 + TEC TEC MGP_C57BL6NJ_T0012329.1 MGP_C57BL6NJ_G0010374.1 mouse_genomes_project 1 60846132 60846484 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102700.1 MGP_C57BL6NJ_G0040495.1 mouse_genomes_project 1 186268824 186272865 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0020776.1 MGP_C57BL6NJ_G0016506.1 mouse_genomes_project 1 69564589 69667226 - MGP_C57BL6NJ_P0020776 Kansl1l protein_coding protein_coding MGP_C57BL6NJ_T0020777.1 MGP_C57BL6NJ_G0016506.1 mouse_genomes_project 1 69566002 69648197 - MGP_C57BL6NJ_P0020777 Kansl1l protein_coding protein_coding MGP_C57BL6NJ_T0020778.1 MGP_C57BL6NJ_G0016506.1 mouse_genomes_project 1 69581722 69667242 - MGP_C57BL6NJ_P0020778 Kansl1l protein_coding protein_coding MGP_C57BL6NJ_T0020779.1 MGP_C57BL6NJ_G0016506.1 mouse_genomes_project 1 69623055 69654852 - Kansl1l protein_coding processed_transcript MGP_C57BL6NJ_T0020780.1 MGP_C57BL6NJ_G0016506.1 mouse_genomes_project 1 69646799 69667226 - Kansl1l protein_coding retained_intron MGP_C57BL6NJ_T0005984.1 MGP_C57BL6NJ_G0005015.1 mouse_genomes_project 1 93699396 93700243 + Platr5 lincRNA lincRNA MGP_C57BL6NJ_T0005985.1 MGP_C57BL6NJ_G0005015.1 mouse_genomes_project 1 93699460 93700216 + Platr5 lincRNA lincRNA MGP_C57BL6NJ_T0000616.1 MGP_C57BL6NJ_G0000532.1 mouse_genomes_project 1 63035119 63036549 - TEC TEC MGP_C57BL6NJ_T0000726.1 MGP_C57BL6NJ_G0000642.1 mouse_genomes_project 1 130203886 130204998 + TEC TEC MGP_C57BL6NJ_T0000721.1 MGP_C57BL6NJ_G0000637.1 mouse_genomes_project 1 127234382 127242545 - TEC TEC MGP_C57BL6NJ_T0000578.1 MGP_C57BL6NJ_G0000494.1 mouse_genomes_project 1 37497618 37497964 - TEC TEC MGP_C57BL6NJ_T0024085.1 MGP_C57BL6NJ_G0017199.1 mouse_genomes_project 1 184709143 184710224 - MGP_C57BL6NJ_P0024085 Apcs protein_coding protein_coding MGP_C57BL6NJ_T0012465.1 MGP_C57BL6NJ_G0010510.1 mouse_genomes_project 1 110743992 110745060 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000724.1 MGP_C57BL6NJ_G0000640.1 mouse_genomes_project 1 128888715 128891773 + TEC TEC MGP_C57BL6NJ_T0099651.1 MGP_C57BL6NJ_G0037697.1 mouse_genomes_project 1 183448337 183448444 - Gm22950 snRNA snRNA MGP_C57BL6NJ_T0005845.1 MGP_C57BL6NJ_G0004916.1 mouse_genomes_project 1 36214349 36222576 + Gm33280 lincRNA lincRNA MGP_C57BL6NJ_T0024288.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192160251 192219478 - MGP_C57BL6NJ_P0024288 Ahctf1 protein_coding protein_coding MGP_C57BL6NJ_T0024289.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192160694 192167767 - MGP_C57BL6NJ_P0024289 Ahctf1 protein_coding protein_coding MGP_C57BL6NJ_T0024290.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192161448 192168938 - Ahctf1 protein_coding retained_intron MGP_C57BL6NJ_T0024291.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192169056 192173347 - MGP_C57BL6NJ_P0024291 Ahctf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024292.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192175620 192181476 - MGP_C57BL6NJ_P0024292 Ahctf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024293.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192183863 192186487 - MGP_C57BL6NJ_P0024293 Ahctf1 protein_coding protein_coding MGP_C57BL6NJ_T0024294.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192208804 192211960 - Ahctf1 protein_coding retained_intron MGP_C57BL6NJ_T0024295.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192214646 192217870 - Ahctf1 protein_coding retained_intron MGP_C57BL6NJ_T0024296.1 MGP_C57BL6NJ_G0017263.1 mouse_genomes_project 1 192214652 192219404 - Ahctf1 protein_coding retained_intron MGP_C57BL6NJ_T0006143.1 MGP_C57BL6NJ_G0005143.1 mouse_genomes_project 1 177267497 177308707 + Gm26665 lincRNA lincRNA MGP_C57BL6NJ_T0023369.1 MGP_C57BL6NJ_G0017041.1 mouse_genomes_project 1 170284447 170730854 + MGP_C57BL6NJ_P0023369 Tnr protein_coding protein_coding MGP_C57BL6NJ_T0023370.1 MGP_C57BL6NJ_G0017041.1 mouse_genomes_project 1 170284519 170507585 + Tnr protein_coding retained_intron MGP_C57BL6NJ_T0023371.1 MGP_C57BL6NJ_G0017041.1 mouse_genomes_project 1 170507299 170723522 + MGP_C57BL6NJ_P0023371 Tnr protein_coding protein_coding MGP_C57BL6NJ_T0023372.1 MGP_C57BL6NJ_G0017041.1 mouse_genomes_project 1 170546895 170648204 + MGP_C57BL6NJ_P0023372 Tnr protein_coding protein_coding MGP_C57BL6NJ_T0023373.1 MGP_C57BL6NJ_G0017041.1 mouse_genomes_project 1 170648258 170661511 + MGP_C57BL6NJ_P0023373 Tnr protein_coding protein_coding MGP_C57BL6NJ_T0020394.1 MGP_C57BL6NJ_G0016440.1 mouse_genomes_project 1 60601737 60616268 + MGP_C57BL6NJ_P0020394 Bzw1 protein_coding protein_coding MGP_C57BL6NJ_T0020395.1 MGP_C57BL6NJ_G0016440.1 mouse_genomes_project 1 60601963 60611844 + MGP_C57BL6NJ_P0020395 Bzw1 protein_coding protein_coding MGP_C57BL6NJ_T0020396.1 MGP_C57BL6NJ_G0016440.1 mouse_genomes_project 1 60602309 60614046 + MGP_C57BL6NJ_P0020396 Bzw1 protein_coding protein_coding MGP_C57BL6NJ_T0012517.1 MGP_C57BL6NJ_G0010562.1 mouse_genomes_project 1 128333329 128333539 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003032.1 MGP_C57BL6NJ_G0002848.1 mouse_genomes_project 1 140901651 140903032 + Gm15849 antisense antisense MGP_C57BL6NJ_T0020077.1 MGP_C57BL6NJ_G0016379.1 mouse_genomes_project 1 44894481 44902086 + MGP_C57BL6NJ_P0020077 protein_coding protein_coding MGP_C57BL6NJ_T0020078.1 MGP_C57BL6NJ_G0016379.1 mouse_genomes_project 1 44894524 44901849 + protein_coding processed_transcript MGP_C57BL6NJ_T0020079.1 MGP_C57BL6NJ_G0016379.1 mouse_genomes_project 1 44895032 44901867 + protein_coding processed_transcript MGP_C57BL6NJ_T0020080.1 MGP_C57BL6NJ_G0016379.1 mouse_genomes_project 1 44895169 44920923 + MGP_C57BL6NJ_P0020080 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020081.1 MGP_C57BL6NJ_G0016379.1 mouse_genomes_project 1 44895498 44901927 + MGP_C57BL6NJ_P0020081 protein_coding protein_coding MGP_C57BL6NJ_T0012225.1 MGP_C57BL6NJ_G0010270.1 mouse_genomes_project 1 29396929 29397551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102697.1 MGP_C57BL6NJ_G0040492.1 mouse_genomes_project 1 186174264 186174730 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017467.1 MGP_C57BL6NJ_G0015494.1 mouse_genomes_project 1 67366702 67377482 - 2810408I11Rik processed_transcript antisense MGP_C57BL6NJ_T0017468.1 MGP_C57BL6NJ_G0015494.1 mouse_genomes_project 1 67370171 67377431 - 2810408I11Rik processed_transcript antisense MGP_C57BL6NJ_T0017469.1 MGP_C57BL6NJ_G0015494.1 mouse_genomes_project 1 67375946 67377451 - 2810408I11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019935.1 MGP_C57BL6NJ_G0016348.1 mouse_genomes_project 1 39696196 39809103 - MGP_C57BL6NJ_P0019935 Tbc1d8 protein_coding protein_coding MGP_C57BL6NJ_T0019936.1 MGP_C57BL6NJ_G0016348.1 mouse_genomes_project 1 39696571 39697138 - MGP_C57BL6NJ_P0019936 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019937.1 MGP_C57BL6NJ_G0016348.1 mouse_genomes_project 1 39697000 39809009 - MGP_C57BL6NJ_P0019937 Tbc1d8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019938.1 MGP_C57BL6NJ_G0016348.1 mouse_genomes_project 1 39698020 39809048 - MGP_C57BL6NJ_P0019938 Tbc1d8 protein_coding protein_coding MGP_C57BL6NJ_T0019939.1 MGP_C57BL6NJ_G0016348.1 mouse_genomes_project 1 39715890 39717324 - Tbc1d8 protein_coding retained_intron MGP_C57BL6NJ_T0012260.1 MGP_C57BL6NJ_G0010305.1 mouse_genomes_project 1 38758472 38759001 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022894.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148018824 148124668 + MGP_C57BL6NJ_P0022894 Dennd1b protein_coding protein_coding MGP_C57BL6NJ_T0022895.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148019098 148254832 + MGP_C57BL6NJ_P0022895 Dennd1b protein_coding protein_coding MGP_C57BL6NJ_T0022896.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148019117 148146657 + MGP_C57BL6NJ_P0022896 Dennd1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022897.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148019258 148257734 + MGP_C57BL6NJ_P0022897 Dennd1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022898.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148077824 148249088 + MGP_C57BL6NJ_P0022898 Dennd1b protein_coding protein_coding MGP_C57BL6NJ_T0022899.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148115270 148118066 + Dennd1b protein_coding retained_intron MGP_C57BL6NJ_T0022900.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148146652 148195184 + Dennd1b protein_coding retained_intron MGP_C57BL6NJ_T0022901.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148184945 148254772 + Dennd1b protein_coding processed_transcript MGP_C57BL6NJ_T0022902.1 MGP_C57BL6NJ_G0016954.1 mouse_genomes_project 1 148192539 148252883 + Dennd1b protein_coding processed_transcript MGP_C57BL6NJ_T0003107.1 MGP_C57BL6NJ_G0002905.1 mouse_genomes_project 1 189118452 189123165 - Gm15423 antisense antisense MGP_C57BL6NJ_T0023001.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160382254 160415418 - MGP_C57BL6NJ_P0023001 BC003331 protein_coding protein_coding MGP_C57BL6NJ_T0023002.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160382262 160415393 - MGP_C57BL6NJ_P0023002 BC003331 protein_coding protein_coding MGP_C57BL6NJ_T0023003.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160382262 160415100 - MGP_C57BL6NJ_P0023003 BC003331 protein_coding protein_coding MGP_C57BL6NJ_T0023004.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160383470 160415057 - MGP_C57BL6NJ_P0023004 BC003331 protein_coding protein_coding MGP_C57BL6NJ_T0023005.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160383480 160415081 - MGP_C57BL6NJ_P0023005 BC003331 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023006.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160395305 160404841 - BC003331 protein_coding retained_intron MGP_C57BL6NJ_T0023007.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160396033 160415275 - BC003331 protein_coding processed_transcript MGP_C57BL6NJ_T0023008.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160406648 160415086 - BC003331 protein_coding retained_intron MGP_C57BL6NJ_T0023009.1 MGP_C57BL6NJ_G0016978.1 mouse_genomes_project 1 160410377 160415085 - BC003331 protein_coding retained_intron MGP_C57BL6NJ_T0022852.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145309005 145339525 + Kif14 protein_coding retained_intron MGP_C57BL6NJ_T0022853.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145310597 145377534 + MGP_C57BL6NJ_P0022853 Kif14 protein_coding protein_coding MGP_C57BL6NJ_T0022854.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145310597 145372340 + MGP_C57BL6NJ_P0022854 Kif14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022855.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145310620 145377534 + MGP_C57BL6NJ_P0022855 Kif14 protein_coding protein_coding MGP_C57BL6NJ_T0022856.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145311665 145314384 + Kif14 protein_coding retained_intron MGP_C57BL6NJ_T0022857.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145319956 145323560 + Kif14 protein_coding processed_transcript MGP_C57BL6NJ_T0022858.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145319956 145323560 + Kif14 protein_coding processed_transcript MGP_C57BL6NJ_T0022859.1 MGP_C57BL6NJ_G0016946.1 mouse_genomes_project 1 145319956 145323560 + MGP_C57BL6NJ_P0022859 Kif14 protein_coding protein_coding MGP_C57BL6NJ_T0012188.1 MGP_C57BL6NJ_G0010233.1 mouse_genomes_project 1 15612590 15617235 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020635.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65752962 65757637 + MGP_C57BL6NJ_P0020635 Eef1b2 protein_coding protein_coding MGP_C57BL6NJ_T0020636.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753266 65755500 + MGP_C57BL6NJ_P0020636 Eef1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020637.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753267 65755794 + MGP_C57BL6NJ_P0020637 Eef1b2 protein_coding protein_coding MGP_C57BL6NJ_T0020638.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753268 65754647 + Eef1b2 protein_coding processed_transcript MGP_C57BL6NJ_T0020639.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753282 65755706 + MGP_C57BL6NJ_P0020639 Eef1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020640.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753282 65755760 + MGP_C57BL6NJ_P0020640 Eef1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020641.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753284 65754561 + Eef1b2 protein_coding processed_transcript MGP_C57BL6NJ_T0020642.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753322 65755017 + MGP_C57BL6NJ_P0020642 Eef1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020643.1 MGP_C57BL6NJ_G0016477.1 mouse_genomes_project 1 65753360 65755036 + MGP_C57BL6NJ_P0020643 Eef1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012268.1 MGP_C57BL6NJ_G0010313.1 mouse_genomes_project 1 42801596 42802657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024118.1 MGP_C57BL6NJ_G0017214.1 mouse_genomes_project 1 185730023 185759455 - MGP_C57BL6NJ_P0024118 Ifi204 protein_coding protein_coding MGP_C57BL6NJ_T0024119.1 MGP_C57BL6NJ_G0017214.1 mouse_genomes_project 1 185742188 185759522 - Ifi204 protein_coding retained_intron MGP_C57BL6NJ_T0000790.1 MGP_C57BL6NJ_G0000704.1 mouse_genomes_project 1 148015812 148018293 - TEC TEC MGP_C57BL6NJ_T0000498.1 MGP_C57BL6NJ_G0000417.1 mouse_genomes_project 1 6710534 6711584 - TEC TEC MGP_C57BL6NJ_T0000909.1 MGP_C57BL6NJ_G0000821.1 mouse_genomes_project 1 195662438 195666662 + TEC TEC MGP_C57BL6NJ_T0000553.1 MGP_C57BL6NJ_G0000470.1 mouse_genomes_project 1 24810208 24810538 - TEC TEC MGP_C57BL6NJ_T0023461.1 MGP_C57BL6NJ_G0017056.1 mouse_genomes_project 1 172423415 172434051 + MGP_C57BL6NJ_P0023461 Tnfsf18 protein_coding protein_coding MGP_C57BL6NJ_T0099639.1 MGP_C57BL6NJ_G0037685.1 mouse_genomes_project 1 161374950 161375041 - Gm24402 snRNA snRNA MGP_C57BL6NJ_T0003002.1 MGP_C57BL6NJ_G0002827.1 mouse_genomes_project 1 98109566 98111953 - 5033417F24Rik antisense antisense MGP_C57BL6NJ_T0024444.1 MGP_C57BL6NJ_G0017292.1 mouse_genomes_project 1 194998985 195006017 - MGP_C57BL6NJ_P0024444 Degs1 protein_coding protein_coding MGP_C57BL6NJ_T0024445.1 MGP_C57BL6NJ_G0017292.1 mouse_genomes_project 1 195001709 195006017 - Degs1 protein_coding retained_intron MGP_C57BL6NJ_T0024446.1 MGP_C57BL6NJ_G0017292.1 mouse_genomes_project 1 195002216 195005437 - MGP_C57BL6NJ_P0024446 Degs1 protein_coding protein_coding MGP_C57BL6NJ_T0000699.1 MGP_C57BL6NJ_G0000615.1 mouse_genomes_project 1 97142479 97144985 - TEC TEC MGP_C57BL6NJ_T0020702.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67718443 67746062 - MGP_C57BL6NJ_P0020702 Akr1cl protein_coding protein_coding MGP_C57BL6NJ_T0020703.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67718443 67746074 - MGP_C57BL6NJ_P0020703 Akr1cl protein_coding protein_coding MGP_C57BL6NJ_T0020704.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67720222 67722296 - Akr1cl protein_coding retained_intron MGP_C57BL6NJ_T0020705.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67721820 67746001 - MGP_C57BL6NJ_P0020705 Akr1cl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020706.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67735781 67746047 - Akr1cl protein_coding processed_transcript MGP_C57BL6NJ_T0020707.1 MGP_C57BL6NJ_G0016491.1 mouse_genomes_project 1 67737623 67746063 - Akr1cl protein_coding retained_intron MGP_C57BL6NJ_T0024629.1 MGP_C57BL6NJ_G0017331.1 mouse_genomes_project 1 203361238 203415584 - MGP_C57BL6NJ_P0024629 Prox1 protein_coding protein_coding MGP_C57BL6NJ_T0024630.1 MGP_C57BL6NJ_G0017331.1 mouse_genomes_project 1 203365656 203414269 - MGP_C57BL6NJ_P0024630 Prox1 protein_coding protein_coding MGP_C57BL6NJ_T0024631.1 MGP_C57BL6NJ_G0017331.1 mouse_genomes_project 1 203366213 203415550 - MGP_C57BL6NJ_P0024631 Prox1 protein_coding protein_coding MGP_C57BL6NJ_T0023521.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173804003 173822318 - MGP_C57BL6NJ_P0023521 Fmo4 protein_coding protein_coding MGP_C57BL6NJ_T0023522.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173804698 173821195 - MGP_C57BL6NJ_P0023522 Fmo4 protein_coding protein_coding MGP_C57BL6NJ_T0023523.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173811817 173822318 - Fmo4 protein_coding retained_intron MGP_C57BL6NJ_T0023524.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173812574 173817439 - Fmo4 protein_coding retained_intron MGP_C57BL6NJ_T0023525.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173816478 173822572 - MGP_C57BL6NJ_P0023525 Fmo4 protein_coding protein_coding MGP_C57BL6NJ_T0023526.1 MGP_C57BL6NJ_G0017067.1 mouse_genomes_project 1 173817249 173822618 - MGP_C57BL6NJ_P0023526 Fmo4 protein_coding protein_coding MGP_C57BL6NJ_T0012549.1 MGP_C57BL6NJ_G0010594.1 mouse_genomes_project 1 145688748 145689397 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020912.1 MGP_C57BL6NJ_G0016535.1 mouse_genomes_project 1 77773967 77775042 + MGP_C57BL6NJ_P0020912 Gpbar1 protein_coding protein_coding MGP_C57BL6NJ_T0012269.1 MGP_C57BL6NJ_G0010314.1 mouse_genomes_project 1 43978765 43979218 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002998.1 MGP_C57BL6NJ_G0002823.1 mouse_genomes_project 1 96918234 96922639 - Gm29100 antisense antisense MGP_C57BL6NJ_T0099655.1 MGP_C57BL6NJ_G0037701.1 mouse_genomes_project 1 190294609 190294716 - Gm25312 snRNA snRNA MGP_C57BL6NJ_T0022528.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141001773 141032452 + MGP_C57BL6NJ_P0022528 Rbbp5 protein_coding protein_coding MGP_C57BL6NJ_T0022529.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141001843 141033621 + MGP_C57BL6NJ_P0022529 Rbbp5 protein_coding protein_coding MGP_C57BL6NJ_T0022530.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141001899 141014904 + MGP_C57BL6NJ_P0022530 Rbbp5 protein_coding protein_coding MGP_C57BL6NJ_T0022531.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141001917 141033626 + MGP_C57BL6NJ_P0022531 Rbbp5 protein_coding protein_coding MGP_C57BL6NJ_T0022532.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141002050 141014988 + MGP_C57BL6NJ_P0022532 Rbbp5 protein_coding protein_coding MGP_C57BL6NJ_T0022533.1 MGP_C57BL6NJ_G0016877.1 mouse_genomes_project 1 141031694 141033617 + Rbbp5 protein_coding retained_intron MGP_C57BL6NJ_T0019796.1 MGP_C57BL6NJ_G0016323.1 mouse_genomes_project 1 36909782 36936765 + MGP_C57BL6NJ_P0019796 Zap70 protein_coding protein_coding MGP_C57BL6NJ_T0019797.1 MGP_C57BL6NJ_G0016323.1 mouse_genomes_project 1 36914918 36919006 + MGP_C57BL6NJ_P0019797 Zap70 protein_coding protein_coding MGP_C57BL6NJ_T0019798.1 MGP_C57BL6NJ_G0016323.1 mouse_genomes_project 1 36918930 36920314 + Zap70 protein_coding retained_intron MGP_C57BL6NJ_T0019799.1 MGP_C57BL6NJ_G0016323.1 mouse_genomes_project 1 36929071 36936762 + Zap70 protein_coding retained_intron MGP_C57BL6NJ_T0020147.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53424045 53593225 - MGP_C57BL6NJ_P0020147 Myo1b protein_coding protein_coding MGP_C57BL6NJ_T0020148.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53424262 53593095 - MGP_C57BL6NJ_P0020148 Myo1b protein_coding protein_coding MGP_C57BL6NJ_T0020149.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53424269 53584470 - MGP_C57BL6NJ_P0020149 Myo1b protein_coding protein_coding MGP_C57BL6NJ_T0020150.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53424274 53593082 - MGP_C57BL6NJ_P0020150 Myo1b protein_coding protein_coding MGP_C57BL6NJ_T0020151.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53435732 53439850 - Myo1b protein_coding retained_intron MGP_C57BL6NJ_T0020152.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53437901 53446257 - Myo1b protein_coding processed_transcript MGP_C57BL6NJ_T0020153.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53437969 53442772 - Myo1b protein_coding retained_intron MGP_C57BL6NJ_T0020154.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53442255 53451812 - Myo1b protein_coding processed_transcript MGP_C57BL6NJ_T0020155.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53451768 53471602 - Myo1b protein_coding processed_transcript MGP_C57BL6NJ_T0020156.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53455090 53457580 - Myo1b protein_coding retained_intron MGP_C57BL6NJ_T0020157.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53473779 53573700 - MGP_C57BL6NJ_P0020157 Myo1b protein_coding protein_coding MGP_C57BL6NJ_T0020158.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53476733 53498049 - Myo1b protein_coding processed_transcript MGP_C57BL6NJ_T0020159.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53488187 53593066 - Myo1b protein_coding retained_intron MGP_C57BL6NJ_T0020160.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53511956 53528595 - Myo1b protein_coding processed_transcript MGP_C57BL6NJ_T0020161.1 MGP_C57BL6NJ_G0016394.1 mouse_genomes_project 1 53541144 53593075 - Myo1b protein_coding retained_intron MGP_C57BL6NJ_T0098931.1 MGP_C57BL6NJ_G0036995.1 mouse_genomes_project 1 95365389 95365496 + Gm27648 rRNA rRNA MGP_C57BL6NJ_T0023272.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166898189 166953758 - MGP_C57BL6NJ_P0023272 Soat1 protein_coding protein_coding MGP_C57BL6NJ_T0023273.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166903445 166944041 - MGP_C57BL6NJ_P0023273 Soat1 protein_coding protein_coding MGP_C57BL6NJ_T0023274.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166904377 166906226 - Soat1 protein_coding retained_intron MGP_C57BL6NJ_T0023275.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166904635 166906672 - Soat1 protein_coding retained_intron MGP_C57BL6NJ_T0023276.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166916171 166953667 - Soat1 protein_coding retained_intron MGP_C57BL6NJ_T0023277.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166916597 166953723 - MGP_C57BL6NJ_P0023277 Soat1 protein_coding protein_coding MGP_C57BL6NJ_T0023278.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166922433 166953624 - Soat1 protein_coding retained_intron MGP_C57BL6NJ_T0023279.1 MGP_C57BL6NJ_G0017027.1 mouse_genomes_project 1 166922666 166953691 - MGP_C57BL6NJ_P0023279 Soat1 protein_coding protein_coding MGP_C57BL6NJ_T0012358.1 MGP_C57BL6NJ_G0010403.1 mouse_genomes_project 1 66483843 66484595 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000602.1 MGP_C57BL6NJ_G0000518.1 mouse_genomes_project 1 56447023 56448684 - TEC TEC MGP_C57BL6NJ_T0003049.1 MGP_C57BL6NJ_G0002861.1 mouse_genomes_project 1 147554609 147587443 + Gm28501 antisense antisense MGP_C57BL6NJ_T0021897.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98541111 98549756 - Pask protein_coding retained_intron MGP_C57BL6NJ_T0021898.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98541119 98579287 - MGP_C57BL6NJ_P0021898 Pask protein_coding protein_coding MGP_C57BL6NJ_T0021899.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98542179 98545490 - Pask protein_coding retained_intron MGP_C57BL6NJ_T0021900.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98542426 98543686 - Pask protein_coding retained_intron MGP_C57BL6NJ_T0021901.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98550170 98579963 - Pask protein_coding retained_intron MGP_C57BL6NJ_T0021902.1 MGP_C57BL6NJ_G0016735.1 mouse_genomes_project 1 98571781 98579980 - MGP_C57BL6NJ_P0021902 Pask protein_coding protein_coding MGP_C57BL6NJ_T0005807.1 MGP_C57BL6NJ_G0004885.1 mouse_genomes_project 1 7543383 7545543 - Snhg6 lincRNA lincRNA MGP_C57BL6NJ_T0005808.1 MGP_C57BL6NJ_G0004885.1 mouse_genomes_project 1 7543447 7544648 - Snhg6 lincRNA lincRNA MGP_C57BL6NJ_T0005809.1 MGP_C57BL6NJ_G0004885.1 mouse_genomes_project 1 7543449 7545528 - Snhg6 lincRNA lincRNA MGP_C57BL6NJ_T0005810.1 MGP_C57BL6NJ_G0004885.1 mouse_genomes_project 1 7543449 7545542 - Snhg6 lincRNA lincRNA MGP_C57BL6NJ_T0005811.1 MGP_C57BL6NJ_G0004885.1 mouse_genomes_project 1 7543449 7544322 - Snhg6 lincRNA lincRNA MGP_C57BL6NJ_T0019353.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102428 9311455 + MGP_C57BL6NJ_P0019353 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019354.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102428 9705462 + MGP_C57BL6NJ_P0019354 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019355.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102435 9221232 + A830018L16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0019356.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102435 9241353 + A830018L16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0019357.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102435 9652712 + MGP_C57BL6NJ_P0019357 A830018L16Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019358.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102592 9311265 + MGP_C57BL6NJ_P0019358 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019359.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102832 9704958 + MGP_C57BL6NJ_P0019359 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019360.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9102832 9704958 + MGP_C57BL6NJ_P0019360 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019361.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9221193 9309526 + MGP_C57BL6NJ_P0019361 A830018L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0019362.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9288838 9306164 + A830018L16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0019363.1 MGP_C57BL6NJ_G0016229.1 mouse_genomes_project 1 9453852 9568801 + MGP_C57BL6NJ_P0019363 A830018L16Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0012138.1 MGP_C57BL6NJ_G0010183.1 mouse_genomes_project 1 3279574 3280657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019513.1 MGP_C57BL6NJ_G0016268.1 mouse_genomes_project 1 19765703 19791779 + MGP_C57BL6NJ_P0019513 Gsta3 protein_coding protein_coding MGP_C57BL6NJ_T0019514.1 MGP_C57BL6NJ_G0016268.1 mouse_genomes_project 1 19765721 19791139 + MGP_C57BL6NJ_P0019514 Gsta3 protein_coding protein_coding MGP_C57BL6NJ_T0019515.1 MGP_C57BL6NJ_G0016268.1 mouse_genomes_project 1 19765743 19790964 + MGP_C57BL6NJ_P0019515 Gsta3 protein_coding protein_coding MGP_C57BL6NJ_T0019516.1 MGP_C57BL6NJ_G0016268.1 mouse_genomes_project 1 19775889 19791080 + MGP_C57BL6NJ_P0019516 Gsta3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019517.1 MGP_C57BL6NJ_G0016268.1 mouse_genomes_project 1 19779638 19782430 + Gsta3 protein_coding retained_intron MGP_C57BL6NJ_T0023849.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182880405 182886909 - MGP_C57BL6NJ_P0023849 Tomm40l protein_coding protein_coding MGP_C57BL6NJ_T0023850.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182882196 182886843 - MGP_C57BL6NJ_P0023850 Tomm40l protein_coding protein_coding MGP_C57BL6NJ_T0023851.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182882196 182886579 - MGP_C57BL6NJ_P0023851 Tomm40l protein_coding protein_coding MGP_C57BL6NJ_T0023852.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182882757 182886846 - MGP_C57BL6NJ_P0023852 Tomm40l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023853.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182885221 182886855 - MGP_C57BL6NJ_P0023853 Tomm40l protein_coding protein_coding MGP_C57BL6NJ_T0023854.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182885292 182886839 - MGP_C57BL6NJ_P0023854 Tomm40l protein_coding protein_coding MGP_C57BL6NJ_T0023855.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182885481 182886827 - Tomm40l protein_coding processed_transcript MGP_C57BL6NJ_T0023856.1 MGP_C57BL6NJ_G0017148.1 mouse_genomes_project 1 182885574 182886891 - Tomm40l protein_coding retained_intron MGP_C57BL6NJ_T0022970.1 MGP_C57BL6NJ_G0016970.1 mouse_genomes_project 1 153500693 153546093 - MGP_C57BL6NJ_P0022970 Rgs13 protein_coding protein_coding MGP_C57BL6NJ_T0022971.1 MGP_C57BL6NJ_G0016970.1 mouse_genomes_project 1 153500706 153545996 - MGP_C57BL6NJ_P0022971 Rgs13 protein_coding protein_coding MGP_C57BL6NJ_T0100890.1 MGP_C57BL6NJ_G0038936.1 mouse_genomes_project 1 100530653 100530763 - Gm23181 snoRNA snoRNA MGP_C57BL6NJ_T0000826.1 MGP_C57BL6NJ_G0000740.1 mouse_genomes_project 1 167184703 167185103 + TEC TEC MGP_C57BL6NJ_T0003110.1 MGP_C57BL6NJ_G0002907.1 mouse_genomes_project 1 190603972 190609159 - B230369F24Rik antisense antisense MGP_C57BL6NJ_T0012315.1 MGP_C57BL6NJ_G0010360.1 mouse_genomes_project 1 54602552 54603414 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005940.1 MGP_C57BL6NJ_G0004982.1 mouse_genomes_project 1 75539859 75583335 + D230017M19Rik lincRNA lincRNA MGP_C57BL6NJ_T0005941.1 MGP_C57BL6NJ_G0004982.1 mouse_genomes_project 1 75546014 75591994 + D230017M19Rik lincRNA lincRNA MGP_C57BL6NJ_T0005942.1 MGP_C57BL6NJ_G0004982.1 mouse_genomes_project 1 75581891 75584377 + D230017M19Rik lincRNA lincRNA MGP_C57BL6NJ_T0098924.1 MGP_C57BL6NJ_G0036988.1 mouse_genomes_project 1 48069095 48069214 + n-R5s211 rRNA rRNA MGP_C57BL6NJ_T0005997.1 MGP_C57BL6NJ_G0005027.1 mouse_genomes_project 1 96582531 96584282 + Gm28382 lincRNA lincRNA MGP_C57BL6NJ_T0000643.1 MGP_C57BL6NJ_G0000559.1 mouse_genomes_project 1 72829239 72831125 + TEC TEC MGP_C57BL6NJ_T0000921.1 MGP_C57BL6NJ_G0000833.1 mouse_genomes_project 1 202225458 202226997 + TEC TEC MGP_C57BL6NJ_T0099622.1 MGP_C57BL6NJ_G0037668.1 mouse_genomes_project 1 130189976 130190125 + Gm24547 snRNA snRNA MGP_C57BL6NJ_T0012170.1 MGP_C57BL6NJ_G0010215.1 mouse_genomes_project 1 8345917 8346409 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003134.1 MGP_C57BL6NJ_G0002928.1 mouse_genomes_project 1 203413539 203414503 + Gm28172 antisense antisense MGP_C57BL6NJ_T0102694.1 MGP_C57BL6NJ_G0040489.1 mouse_genomes_project 1 185874335 185876903 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100888.1 MGP_C57BL6NJ_G0038934.1 mouse_genomes_project 1 90951068 90951138 - Snord82 snoRNA snoRNA MGP_C57BL6NJ_T0012427.1 MGP_C57BL6NJ_G0010472.1 mouse_genomes_project 1 92213720 92214746 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019490.1 MGP_C57BL6NJ_G0016260.1 mouse_genomes_project 1 18495091 19096464 - MGP_C57BL6NJ_P0019490 Pkhd1 protein_coding protein_coding MGP_C57BL6NJ_T0019491.1 MGP_C57BL6NJ_G0016260.1 mouse_genomes_project 1 18827062 18870946 - Pkhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0019492.1 MGP_C57BL6NJ_G0016260.1 mouse_genomes_project 1 19056168 19096464 - Pkhd1 protein_coding retained_intron MGP_C57BL6NJ_T0019493.1 MGP_C57BL6NJ_G0016260.1 mouse_genomes_project 1 19083566 19096440 - Pkhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0009714.1 MGP_C57BL6NJ_G0007799.1 mouse_genomes_project 1 106778224 106778333 + Gm25537 miRNA miRNA MGP_C57BL6NJ_T0099586.1 MGP_C57BL6NJ_G0037632.1 mouse_genomes_project 1 35802874 35802979 + Gm25634 snRNA snRNA MGP_C57BL6NJ_T0012590.1 MGP_C57BL6NJ_G0010635.1 mouse_genomes_project 1 164697506 164698059 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020338.1 MGP_C57BL6NJ_G0016429.1 mouse_genomes_project 1 58926674 59120567 - MGP_C57BL6NJ_P0020338 Satb2 protein_coding protein_coding MGP_C57BL6NJ_T0020339.1 MGP_C57BL6NJ_G0016429.1 mouse_genomes_project 1 58926679 59119923 - MGP_C57BL6NJ_P0020339 Satb2 protein_coding protein_coding MGP_C57BL6NJ_T0020340.1 MGP_C57BL6NJ_G0016429.1 mouse_genomes_project 1 58926681 59116322 - MGP_C57BL6NJ_P0020340 Satb2 protein_coding protein_coding MGP_C57BL6NJ_T0020341.1 MGP_C57BL6NJ_G0016429.1 mouse_genomes_project 1 59094639 59116290 - MGP_C57BL6NJ_P0020341 Satb2 protein_coding protein_coding MGP_C57BL6NJ_T0020342.1 MGP_C57BL6NJ_G0016429.1 mouse_genomes_project 1 59116189 59126707 - MGP_C57BL6NJ_P0020342 Satb2 protein_coding protein_coding MGP_C57BL6NJ_T0099615.1 MGP_C57BL6NJ_G0037661.1 mouse_genomes_project 1 104774444 104774544 + Gm23434 snRNA snRNA MGP_C57BL6NJ_T0023551.1 MGP_C57BL6NJ_G0017074.1 mouse_genomes_project 1 174443524 174462246 - MGP_C57BL6NJ_P0023551 Gorab protein_coding protein_coding MGP_C57BL6NJ_T0023552.1 MGP_C57BL6NJ_G0017074.1 mouse_genomes_project 1 174443528 174462233 - MGP_C57BL6NJ_P0023552 Gorab protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023553.1 MGP_C57BL6NJ_G0017074.1 mouse_genomes_project 1 174452992 174462188 - Gorab protein_coding retained_intron MGP_C57BL6NJ_T0102634.1 MGP_C57BL6NJ_G0040429.1 mouse_genomes_project 1 19855143 19858947 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017547.1 MGP_C57BL6NJ_G0015516.1 mouse_genomes_project 1 181433071 181434622 - Gm15852 processed_transcript processed_transcript MGP_C57BL6NJ_T0020939.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887286 77899362 + MGP_C57BL6NJ_P0020939 Slc11a1 protein_coding protein_coding MGP_C57BL6NJ_T0020940.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887294 77899659 + Slc11a1 protein_coding retained_intron MGP_C57BL6NJ_T0020941.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887294 77899669 + MGP_C57BL6NJ_P0020941 Slc11a1 protein_coding protein_coding MGP_C57BL6NJ_T0020942.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887316 77899658 + Slc11a1 protein_coding retained_intron MGP_C57BL6NJ_T0020943.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887344 77895451 + Slc11a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020944.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77887663 77888982 + Slc11a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020945.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77888748 77893557 + Slc11a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020946.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77895275 77897780 + Slc11a1 protein_coding retained_intron MGP_C57BL6NJ_T0020947.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77896640 77897441 + Slc11a1 protein_coding retained_intron MGP_C57BL6NJ_T0020948.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77896947 77897780 + Slc11a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020949.1 MGP_C57BL6NJ_G0016540.1 mouse_genomes_project 1 77897206 77898804 + Slc11a1 protein_coding processed_transcript MGP_C57BL6NJ_T0003139.1 MGP_C57BL6NJ_G0002932.1 mouse_genomes_project 1 205241321 205242945 - Gm38037 antisense antisense MGP_C57BL6NJ_T0012506.1 MGP_C57BL6NJ_G0010551.1 mouse_genomes_project 1 125793999 125794987 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009723.1 MGP_C57BL6NJ_G0007808.1 mouse_genomes_project 1 142366958 142367046 - Mir6903 miRNA miRNA MGP_C57BL6NJ_T0098793.1 MGP_C57BL6NJ_G0036857.1 mouse_genomes_project 1 126965823 126967623 + pseudogene pseudogene MGP_C57BL6NJ_T0019760.1 MGP_C57BL6NJ_G0016316.1 mouse_genomes_project 1 36636557 36652891 + MGP_C57BL6NJ_P0019760 Cnnm3 protein_coding protein_coding MGP_C57BL6NJ_T0019761.1 MGP_C57BL6NJ_G0016316.1 mouse_genomes_project 1 36636557 36652891 + MGP_C57BL6NJ_P0019761 Cnnm3 protein_coding protein_coding MGP_C57BL6NJ_T0019762.1 MGP_C57BL6NJ_G0016316.1 mouse_genomes_project 1 36637787 36645089 + Cnnm3 protein_coding retained_intron MGP_C57BL6NJ_T0019763.1 MGP_C57BL6NJ_G0016316.1 mouse_genomes_project 1 36643222 36644228 + Cnnm3 protein_coding retained_intron MGP_C57BL6NJ_T0019764.1 MGP_C57BL6NJ_G0016316.1 mouse_genomes_project 1 36645414 36650254 + Cnnm3 protein_coding retained_intron MGP_C57BL6NJ_T0012576.1 MGP_C57BL6NJ_G0010621.1 mouse_genomes_project 1 158976791 158978804 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006083.1 MGP_C57BL6NJ_G0005097.1 mouse_genomes_project 1 146919556 146960369 - Gm26936 lincRNA lincRNA MGP_C57BL6NJ_T0006084.1 MGP_C57BL6NJ_G0005097.1 mouse_genomes_project 1 146955367 146960344 - Gm26936 lincRNA lincRNA MGP_C57BL6NJ_T0102389.1 MGP_C57BL6NJ_G0040321.1 mouse_genomes_project 1 181776392 181778083 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102390.1 MGP_C57BL6NJ_G0040321.1 mouse_genomes_project 1 181777720 181777924 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0009711.1 MGP_C57BL6NJ_G0007796.1 mouse_genomes_project 1 101874411 101874500 - Gm24586 miRNA miRNA MGP_C57BL6NJ_T0012340.1 MGP_C57BL6NJ_G0010385.1 mouse_genomes_project 1 62973127 62973544 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000914.1 MGP_C57BL6NJ_G0000826.1 mouse_genomes_project 1 199285781 199286892 + TEC TEC MGP_C57BL6NJ_T0000508.1 MGP_C57BL6NJ_G0000427.1 mouse_genomes_project 1 10933218 10933769 - TEC TEC MGP_C57BL6NJ_T0023462.1 MGP_C57BL6NJ_G0017057.1 mouse_genomes_project 1 172729613 172739012 - MGP_C57BL6NJ_P0023462 Fasl protein_coding protein_coding MGP_C57BL6NJ_T0023463.1 MGP_C57BL6NJ_G0017057.1 mouse_genomes_project 1 172730346 172738875 - MGP_C57BL6NJ_P0023463 Fasl protein_coding protein_coding MGP_C57BL6NJ_T0005857.1 MGP_C57BL6NJ_G0004925.1 mouse_genomes_project 1 42855272 42856655 + Gm9915 lincRNA lincRNA MGP_C57BL6NJ_T0005858.1 MGP_C57BL6NJ_G0004925.1 mouse_genomes_project 1 42855273 42856655 + Gm9915 lincRNA lincRNA MGP_C57BL6NJ_T0006166.1 MGP_C57BL6NJ_G0005164.1 mouse_genomes_project 1 193647313 193649719 + Gm37406 lincRNA lincRNA MGP_C57BL6NJ_T0020649.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058415 66201573 + MGP_C57BL6NJ_P0020649 Adam23 protein_coding protein_coding MGP_C57BL6NJ_T0020650.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058419 66224595 + MGP_C57BL6NJ_P0020650 Adam23 protein_coding protein_coding MGP_C57BL6NJ_T0020651.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058434 66197459 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0020652.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058459 66157342 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0020653.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058735 66221234 + MGP_C57BL6NJ_P0020653 Adam23 protein_coding protein_coding MGP_C57BL6NJ_T0020654.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66058735 66224595 + MGP_C57BL6NJ_P0020654 Adam23 protein_coding protein_coding MGP_C57BL6NJ_T0020655.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66086648 66170029 + Adam23 protein_coding processed_transcript MGP_C57BL6NJ_T0020656.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66110149 66224595 + Adam23 protein_coding processed_transcript MGP_C57BL6NJ_T0020657.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66161459 66164966 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0020658.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66182142 66195275 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0020659.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66207113 66210501 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0020660.1 MGP_C57BL6NJ_G0016480.1 mouse_genomes_project 1 66213344 66221127 + Adam23 protein_coding retained_intron MGP_C57BL6NJ_T0021648.1 MGP_C57BL6NJ_G0016673.1 mouse_genomes_project 1 92842927 92996654 + MGP_C57BL6NJ_P0021648 protein_coding protein_coding MGP_C57BL6NJ_T0021650.1 MGP_C57BL6NJ_G0016673.1 mouse_genomes_project 1 92846033 92996660 + MGP_C57BL6NJ_P0021650 protein_coding protein_coding MGP_C57BL6NJ_T0024691.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204922169 204961529 - MGP_C57BL6NJ_P0024691 Dtl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024692.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204922178 204961552 - MGP_C57BL6NJ_P0024692 Dtl protein_coding protein_coding MGP_C57BL6NJ_T0024693.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204923918 204961522 - Dtl protein_coding processed_transcript MGP_C57BL6NJ_T0024694.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204934600 204961521 - MGP_C57BL6NJ_P0024694 Dtl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024695.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204944697 204961519 - Dtl protein_coding retained_intron MGP_C57BL6NJ_T0024696.1 MGP_C57BL6NJ_G0017345.1 mouse_genomes_project 1 204956828 204961521 - Dtl protein_coding retained_intron MGP_C57BL6NJ_T0012327.1 MGP_C57BL6NJ_G0010372.1 mouse_genomes_project 1 59703569 59704454 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009736.1 MGP_C57BL6NJ_G0007821.1 mouse_genomes_project 1 173677062 173677125 - Gm27616 miRNA miRNA MGP_C57BL6NJ_T0012553.1 MGP_C57BL6NJ_G0010598.1 mouse_genomes_project 1 147909304 147909527 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002914.1 MGP_C57BL6NJ_G0002758.1 mouse_genomes_project 1 18803243 18847042 + 4930486I03Rik antisense antisense MGP_C57BL6NJ_T0100900.1 MGP_C57BL6NJ_G0038946.1 mouse_genomes_project 1 119262466 119262602 + Gm22331 snoRNA snoRNA MGP_C57BL6NJ_T0019949.1 MGP_C57BL6NJ_G0016352.1 mouse_genomes_project 1 40016143 40072806 - MGP_C57BL6NJ_P0019949 Rfx8 protein_coding protein_coding MGP_C57BL6NJ_T0019950.1 MGP_C57BL6NJ_G0016352.1 mouse_genomes_project 1 40031766 40042684 - Rfx8 protein_coding processed_transcript MGP_C57BL6NJ_T0102651.1 MGP_C57BL6NJ_G0040446.1 mouse_genomes_project 1 91751720 91754691 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002985.1 MGP_C57BL6NJ_G0002811.1 mouse_genomes_project 1 78887912 78896034 - Gm15179 antisense antisense MGP_C57BL6NJ_T0002986.1 MGP_C57BL6NJ_G0002811.1 mouse_genomes_project 1 78887972 78890152 - Gm15179 antisense antisense MGP_C57BL6NJ_T0019610.1 MGP_C57BL6NJ_G0016291.1 mouse_genomes_project 1 31875782 32415678 + MGP_C57BL6NJ_P0019610 Khdrbs2 protein_coding protein_coding MGP_C57BL6NJ_T0019611.1 MGP_C57BL6NJ_G0016291.1 mouse_genomes_project 1 31875797 31956726 + MGP_C57BL6NJ_P0019611 Khdrbs2 protein_coding protein_coding MGP_C57BL6NJ_T0019612.1 MGP_C57BL6NJ_G0016291.1 mouse_genomes_project 1 31875816 32055461 + MGP_C57BL6NJ_P0019612 Khdrbs2 protein_coding protein_coding MGP_C57BL6NJ_T0019613.1 MGP_C57BL6NJ_G0016291.1 mouse_genomes_project 1 31875955 32027173 + MGP_C57BL6NJ_P0019613 Khdrbs2 protein_coding protein_coding MGP_C57BL6NJ_T0019614.1 MGP_C57BL6NJ_G0016291.1 mouse_genomes_project 1 32031652 32138881 + Khdrbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0022621.1 MGP_C57BL6NJ_G0016895.1 mouse_genomes_project 1 142286987 142291994 - MGP_C57BL6NJ_P0022621 Zbed6 protein_coding protein_coding MGP_C57BL6NJ_T0009653.1 MGP_C57BL6NJ_G0007738.1 mouse_genomes_project 1 6055263 6055373 - Gm23358 miRNA miRNA MGP_C57BL6NJ_T0021988.1 MGP_C57BL6NJ_G0016754.1 mouse_genomes_project 1 101151584 101233881 - MGP_C57BL6NJ_P0021988 St8sia4 protein_coding protein_coding MGP_C57BL6NJ_T0021989.1 MGP_C57BL6NJ_G0016754.1 mouse_genomes_project 1 101185905 101233845 - MGP_C57BL6NJ_P0021989 St8sia4 protein_coding protein_coding MGP_C57BL6NJ_T0021990.1 MGP_C57BL6NJ_G0016754.1 mouse_genomes_project 1 101224621 101233878 - St8sia4 protein_coding retained_intron MGP_C57BL6NJ_T0021991.1 MGP_C57BL6NJ_G0016754.1 mouse_genomes_project 1 101230261 101233875 - St8sia4 protein_coding retained_intron MGP_C57BL6NJ_T0100850.1 MGP_C57BL6NJ_G0038896.1 mouse_genomes_project 1 15729806 15729917 + Gm25166 snoRNA snoRNA MGP_C57BL6NJ_T0024379.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193476383 193485989 + MGP_C57BL6NJ_P0024379 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024380.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193476497 193488689 + MGP_C57BL6NJ_P0024380 Tmem63a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024381.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193476498 193547334 + MGP_C57BL6NJ_P0024381 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024382.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193476613 193528263 + MGP_C57BL6NJ_P0024382 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024383.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193478074 193547325 + MGP_C57BL6NJ_P0024383 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024384.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193479945 193480754 + MGP_C57BL6NJ_P0024384 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024385.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193480001 193482878 + MGP_C57BL6NJ_P0024385 Tmem63a protein_coding protein_coding MGP_C57BL6NJ_T0024386.1 MGP_C57BL6NJ_G0017279.1 mouse_genomes_project 1 193532324 193533099 + Tmem63a protein_coding retained_intron MGP_C57BL6NJ_T0021251.1 MGP_C57BL6NJ_G0016587.1 mouse_genomes_project 1 81836366 81939907 - MGP_C57BL6NJ_P0021251 Pax3 protein_coding protein_coding MGP_C57BL6NJ_T0021252.1 MGP_C57BL6NJ_G0016587.1 mouse_genomes_project 1 81836369 81940203 - MGP_C57BL6NJ_P0021252 Pax3 protein_coding protein_coding MGP_C57BL6NJ_T0021253.1 MGP_C57BL6NJ_G0016587.1 mouse_genomes_project 1 81926243 81940182 - Pax3 protein_coding processed_transcript MGP_C57BL6NJ_T0000624.1 MGP_C57BL6NJ_G0000540.1 mouse_genomes_project 1 64310868 64311788 + TEC TEC MGP_C57BL6NJ_T0019509.1 MGP_C57BL6NJ_G0016266.1 mouse_genomes_project 1 19492652 19578323 - MGP_C57BL6NJ_P0019509 Tram2 protein_coding protein_coding MGP_C57BL6NJ_T0019510.1 MGP_C57BL6NJ_G0016266.1 mouse_genomes_project 1 19500659 19539801 - Tram2 protein_coding processed_transcript MGP_C57BL6NJ_T0000903.1 MGP_C57BL6NJ_G0000816.1 mouse_genomes_project 1 194670206 194674075 - TEC TEC MGP_C57BL6NJ_T0099636.1 MGP_C57BL6NJ_G0037682.1 mouse_genomes_project 1 153997985 153998092 - Gm23672 snRNA snRNA MGP_C57BL6NJ_T0099654.1 MGP_C57BL6NJ_G0037700.1 mouse_genomes_project 1 188874285 188874393 + Gm26104 snRNA snRNA MGP_C57BL6NJ_T0000585.1 MGP_C57BL6NJ_G0000501.1 mouse_genomes_project 1 39745350 39746235 - TEC TEC MGP_C57BL6NJ_T0011518.1 MGP_C57BL6NJ_G0009603.1 mouse_genomes_project 1 188979586 188979851 + Gm25288 misc_RNA misc_RNA MGP_C57BL6NJ_T0098942.1 MGP_C57BL6NJ_G0037006.1 mouse_genomes_project 1 194513249 194513365 - Gm26004 rRNA rRNA MGP_C57BL6NJ_T0000693.1 MGP_C57BL6NJ_G0000609.1 mouse_genomes_project 1 95257085 95258430 - TEC TEC MGP_C57BL6NJ_T0012531.1 MGP_C57BL6NJ_G0010576.1 mouse_genomes_project 1 133636272 133636901 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012135.1 MGP_C57BL6NJ_G0010180.1 mouse_genomes_project 1 2226295 2227883 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100844.1 MGP_C57BL6NJ_G0038890.1 mouse_genomes_project 1 8591521 8591612 + Gm22963 snoRNA snoRNA MGP_C57BL6NJ_T0021133.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749583 78758887 + MGP_C57BL6NJ_P0021133 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021134.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749676 78758003 + MGP_C57BL6NJ_P0021134 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021135.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749676 78758003 + MGP_C57BL6NJ_P0021135 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021136.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749680 78758891 + MGP_C57BL6NJ_P0021136 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021137.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749698 78758889 + MGP_C57BL6NJ_P0021137 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021138.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749724 78758254 + MGP_C57BL6NJ_P0021138 Dnajb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021139.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749767 78758889 + MGP_C57BL6NJ_P0021139 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021140.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749825 78752545 + MGP_C57BL6NJ_P0021140 Dnajb2 protein_coding protein_coding MGP_C57BL6NJ_T0021141.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78749983 78750893 + Dnajb2 protein_coding retained_intron MGP_C57BL6NJ_T0021142.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78750286 78750736 + Dnajb2 protein_coding retained_intron MGP_C57BL6NJ_T0021143.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78752135 78754120 + Dnajb2 protein_coding retained_intron MGP_C57BL6NJ_T0021144.1 MGP_C57BL6NJ_G0016572.1 mouse_genomes_project 1 78754607 78758126 + MGP_C57BL6NJ_P0021144 Dnajb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022805.1 MGP_C57BL6NJ_G0016935.1 mouse_genomes_project 1 144685186 144734195 - MGP_C57BL6NJ_P0022805 Pkp1 protein_coding protein_coding MGP_C57BL6NJ_T0022806.1 MGP_C57BL6NJ_G0016935.1 mouse_genomes_project 1 144686741 144734108 - MGP_C57BL6NJ_P0022806 Pkp1 protein_coding protein_coding MGP_C57BL6NJ_T0022807.1 MGP_C57BL6NJ_G0016935.1 mouse_genomes_project 1 144687157 144734130 - MGP_C57BL6NJ_P0022807 Pkp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022808.1 MGP_C57BL6NJ_G0016935.1 mouse_genomes_project 1 144691109 144692067 - Pkp1 protein_coding retained_intron MGP_C57BL6NJ_T0020712.1 MGP_C57BL6NJ_G0016495.1 mouse_genomes_project 1 67801283 67803353 - MGP_C57BL6NJ_P0020712 Crygb protein_coding protein_coding MGP_C57BL6NJ_T0020716.1 MGP_C57BL6NJ_G0016498.1 mouse_genomes_project 1 67822618 67839632 - MGP_C57BL6NJ_P0020716 D630023F18Rik protein_coding protein_coding MGP_C57BL6NJ_T0020717.1 MGP_C57BL6NJ_G0016498.1 mouse_genomes_project 1 67824646 67839611 - MGP_C57BL6NJ_P0020717 D630023F18Rik protein_coding protein_coding MGP_C57BL6NJ_T0020718.1 MGP_C57BL6NJ_G0016498.1 mouse_genomes_project 1 67826050 67839532 - MGP_C57BL6NJ_P0020718 D630023F18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009748.1 MGP_C57BL6NJ_G0007833.1 mouse_genomes_project 1 193046842 193046909 + Mir6904 miRNA miRNA MGP_C57BL6NJ_T0024242.1 MGP_C57BL6NJ_G0017250.1 mouse_genomes_project 1 189927167 189951071 + MGP_C57BL6NJ_P0024242 1700016C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0002933.1 MGP_C57BL6NJ_G0002774.1 mouse_genomes_project 1 38648960 38660799 + Gm16152 antisense antisense MGP_C57BL6NJ_T0002934.1 MGP_C57BL6NJ_G0002774.1 mouse_genomes_project 1 38655239 38656655 + Gm16152 antisense antisense MGP_C57BL6NJ_T0021205.1 MGP_C57BL6NJ_G0016582.1 mouse_genomes_project 1 79011501 79017693 + MGP_C57BL6NJ_P0021205 Tmem198 protein_coding protein_coding MGP_C57BL6NJ_T0021206.1 MGP_C57BL6NJ_G0016582.1 mouse_genomes_project 1 79011545 79014611 + MGP_C57BL6NJ_P0021206 Tmem198 protein_coding protein_coding MGP_C57BL6NJ_T0021207.1 MGP_C57BL6NJ_G0016582.1 mouse_genomes_project 1 79011549 79017705 + MGP_C57BL6NJ_P0021207 Tmem198 protein_coding protein_coding MGP_C57BL6NJ_T0021208.1 MGP_C57BL6NJ_G0016582.1 mouse_genomes_project 1 79011673 79014674 + MGP_C57BL6NJ_P0021208 Tmem198 protein_coding protein_coding MGP_C57BL6NJ_T0102638.1 MGP_C57BL6NJ_G0040433.1 mouse_genomes_project 1 47029168 47031962 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012187.1 MGP_C57BL6NJ_G0010232.1 mouse_genomes_project 1 15610136 15610608 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019187.1 MGP_C57BL6NJ_G0016202.1 mouse_genomes_project 1 1945042 2040954 + MGP_C57BL6NJ_P0019187 Gm37988 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012402.1 MGP_C57BL6NJ_G0010447.1 mouse_genomes_project 1 85811834 85812819 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009710.1 MGP_C57BL6NJ_G0007795.1 mouse_genomes_project 1 98588638 98588766 + Mir6345 miRNA miRNA MGP_C57BL6NJ_T0012270.1 MGP_C57BL6NJ_G0010315.1 mouse_genomes_project 1 44133183 44133563 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023952.1 MGP_C57BL6NJ_G0017166.1 mouse_genomes_project 1 183201893 183203157 + MGP_C57BL6NJ_P0023952 Alyref2 protein_coding protein_coding MGP_C57BL6NJ_T0000900.1 MGP_C57BL6NJ_G0000813.1 mouse_genomes_project 1 194345948 194349761 - TEC TEC MGP_C57BL6NJ_T0012645.1 MGP_C57BL6NJ_G0010690.1 mouse_genomes_project 1 191927661 191928180 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012239.1 MGP_C57BL6NJ_G0010284.1 mouse_genomes_project 1 33305722 33306140 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006171.1 MGP_C57BL6NJ_G0005167.1 mouse_genomes_project 1 194477953 194486544 + lincRNA lincRNA MGP_C57BL6NJ_T0006172.1 MGP_C57BL6NJ_G0005167.1 mouse_genomes_project 1 194480836 194486522 + lincRNA lincRNA MGP_C57BL6NJ_T0006173.1 MGP_C57BL6NJ_G0005167.1 mouse_genomes_project 1 194485260 194487577 + lincRNA lincRNA MGP_C57BL6NJ_T0000686.1 MGP_C57BL6NJ_G0000602.1 mouse_genomes_project 1 91665004 91665675 + TEC TEC MGP_C57BL6NJ_T0000822.1 MGP_C57BL6NJ_G0000736.1 mouse_genomes_project 1 166520265 166524035 - TEC TEC MGP_C57BL6NJ_T0023659.1 MGP_C57BL6NJ_G0017100.1 mouse_genomes_project 1 177017483 177028560 + MGP_C57BL6NJ_P0023659 Creg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023660.1 MGP_C57BL6NJ_G0017100.1 mouse_genomes_project 1 177017483 177028560 + MGP_C57BL6NJ_P0023660 Creg1 protein_coding protein_coding MGP_C57BL6NJ_T0023661.1 MGP_C57BL6NJ_G0017100.1 mouse_genomes_project 1 177022748 177027170 + MGP_C57BL6NJ_P0023661 Creg1 protein_coding protein_coding MGP_C57BL6NJ_T0021675.1 MGP_C57BL6NJ_G0016685.1 mouse_genomes_project 1 94035764 94122648 + MGP_C57BL6NJ_P0021675 Sh3bp4 protein_coding protein_coding MGP_C57BL6NJ_T0021676.1 MGP_C57BL6NJ_G0016685.1 mouse_genomes_project 1 94035802 94077759 + Sh3bp4 protein_coding processed_transcript MGP_C57BL6NJ_T0102702.1 MGP_C57BL6NJ_G0040497.1 mouse_genomes_project 1 189046802 189046962 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024566.1 MGP_C57BL6NJ_G0017320.1 mouse_genomes_project 1 199688376 199713695 - MGP_C57BL6NJ_P0024566 Rrp15 protein_coding protein_coding MGP_C57BL6NJ_T0024567.1 MGP_C57BL6NJ_G0017320.1 mouse_genomes_project 1 199688490 199713662 - Rrp15 protein_coding retained_intron MGP_C57BL6NJ_T0002907.1 MGP_C57BL6NJ_G0002753.1 mouse_genomes_project 1 15080582 15280897 + antisense antisense MGP_C57BL6NJ_T0002937.1 MGP_C57BL6NJ_G0002777.1 mouse_genomes_project 1 40452517 40464405 - Gm16894 antisense antisense MGP_C57BL6NJ_T0099590.1 MGP_C57BL6NJ_G0037636.1 mouse_genomes_project 1 55793405 55793519 - Gm24251 snRNA snRNA MGP_C57BL6NJ_T0005982.1 MGP_C57BL6NJ_G0005013.1 mouse_genomes_project 1 93458366 93468866 + Gm19589 lincRNA lincRNA MGP_C57BL6NJ_T0000928.1 MGP_C57BL6NJ_G0000840.1 mouse_genomes_project 1 206269365 206271462 - TEC TEC MGP_C57BL6NJ_T0000929.1 MGP_C57BL6NJ_G0000840.1 mouse_genomes_project 1 206269416 206270967 - TEC TEC MGP_C57BL6NJ_T0011515.1 MGP_C57BL6NJ_G0009600.1 mouse_genomes_project 1 150535605 150535719 + Gm22016 misc_RNA misc_RNA MGP_C57BL6NJ_T0022387.1 MGP_C57BL6NJ_G0016843.1 mouse_genomes_project 1 139097767 139105561 + MGP_C57BL6NJ_P0022387 Yod1 protein_coding protein_coding MGP_C57BL6NJ_T0000935.1 MGP_C57BL6NJ_G0000846.1 mouse_genomes_project 1 208202694 208204528 + TEC TEC MGP_C57BL6NJ_T0102701.1 MGP_C57BL6NJ_G0040496.1 mouse_genomes_project 1 186479125 186480262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012631.1 MGP_C57BL6NJ_G0010676.1 mouse_genomes_project 1 183050419 183050755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020719.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67879084 67901026 - MGP_C57BL6NJ_P0020719 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020720.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67879086 67910323 - MGP_C57BL6NJ_P0020720 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020721.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67887996 67910282 - MGP_C57BL6NJ_P0020721 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020722.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67888041 67910344 - MGP_C57BL6NJ_P0020722 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020723.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67890386 67897355 - MGP_C57BL6NJ_P0020723 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020724.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67892917 67910303 - MGP_C57BL6NJ_P0020724 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0020725.1 MGP_C57BL6NJ_G0016499.1 mouse_genomes_project 1 67897086 67910323 - MGP_C57BL6NJ_P0020725 Idh1 protein_coding protein_coding MGP_C57BL6NJ_T0023439.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 171994078 172038709 - Klhl20 protein_coding retained_intron MGP_C57BL6NJ_T0023440.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 171994078 172038709 - MGP_C57BL6NJ_P0023440 Klhl20 protein_coding protein_coding MGP_C57BL6NJ_T0023441.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 171994083 172038626 - MGP_C57BL6NJ_P0023441 Klhl20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023442.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 171994101 172003060 - MGP_C57BL6NJ_P0023442 Klhl20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023443.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 172003880 172038709 - Klhl20 protein_coding retained_intron MGP_C57BL6NJ_T0023444.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 172007338 172011576 - Klhl20 protein_coding retained_intron MGP_C57BL6NJ_T0023445.1 MGP_C57BL6NJ_G0017052.1 mouse_genomes_project 1 172015479 172038640 - Klhl20 protein_coding retained_intron MGP_C57BL6NJ_T0017543.1 MGP_C57BL6NJ_G0015514.1 mouse_genomes_project 1 176026167 176035936 + Gm20743 processed_transcript lincRNA MGP_C57BL6NJ_T0017544.1 MGP_C57BL6NJ_G0015514.1 mouse_genomes_project 1 176026392 176105403 + Gm20743 processed_transcript antisense MGP_C57BL6NJ_T0009694.1 MGP_C57BL6NJ_G0007779.1 mouse_genomes_project 1 78722132 78722248 - Gm27943 miRNA miRNA MGP_C57BL6NJ_T0006206.1 MGP_C57BL6NJ_G0005191.1 mouse_genomes_project 1 199908806 199911986 + 1700023G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006207.1 MGP_C57BL6NJ_G0005191.1 mouse_genomes_project 1 199908835 199911200 + 1700023G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0022232.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128863016 128888335 - MGP_C57BL6NJ_P0022232 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022233.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128864562 128865988 - Insig2 protein_coding retained_intron MGP_C57BL6NJ_T0022234.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128864593 128888417 - MGP_C57BL6NJ_P0022234 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022235.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128865549 128871966 - Insig2 protein_coding retained_intron MGP_C57BL6NJ_T0022236.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128865606 128888389 - MGP_C57BL6NJ_P0022236 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022237.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128865906 128882743 - MGP_C57BL6NJ_P0022237 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022238.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128871396 128879280 - Insig2 protein_coding retained_intron MGP_C57BL6NJ_T0022239.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128879215 128888306 - MGP_C57BL6NJ_P0022239 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022240.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128879285 128888312 - MGP_C57BL6NJ_P0022240 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0022241.1 MGP_C57BL6NJ_G0016813.1 mouse_genomes_project 1 128879312 128893174 - MGP_C57BL6NJ_P0022241 Insig2 protein_coding protein_coding MGP_C57BL6NJ_T0012507.1 MGP_C57BL6NJ_G0010552.1 mouse_genomes_project 1 126005298 126005612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000515.1 MGP_C57BL6NJ_G0000434.1 mouse_genomes_project 1 11541528 11542718 - TEC TEC MGP_C57BL6NJ_T0003061.1 MGP_C57BL6NJ_G0002869.1 mouse_genomes_project 1 164009808 164012054 - Gm29529 antisense antisense MGP_C57BL6NJ_T0020880.1 MGP_C57BL6NJ_G0016529.1 mouse_genomes_project 1 76411196 76412032 - MGP_C57BL6NJ_P0020880 Tnp1 protein_coding protein_coding MGP_C57BL6NJ_T0006223.1 MGP_C57BL6NJ_G0005205.1 mouse_genomes_project 1 206977652 206980589 - 4631405K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0003040.1 MGP_C57BL6NJ_G0002852.1 mouse_genomes_project 1 142563499 142571634 + Gm15851 antisense antisense MGP_C57BL6NJ_T0099308.1 MGP_C57BL6NJ_G0037371.1 mouse_genomes_project 1 164071416 164072203 + Gm28512 sense_intronic sense_intronic MGP_C57BL6NJ_T0009726.1 MGP_C57BL6NJ_G0007811.1 mouse_genomes_project 1 146957601 146957688 + Mir181a-1 miRNA miRNA MGP_C57BL6NJ_T0012335.1 MGP_C57BL6NJ_G0010380.1 mouse_genomes_project 1 62002900 62003285 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006028.1 MGP_C57BL6NJ_G0005052.1 mouse_genomes_project 1 118078919 118142816 - Gm29088 lincRNA lincRNA MGP_C57BL6NJ_T0021715.1 MGP_C57BL6NJ_G0016695.1 mouse_genomes_project 1 96046631 96058083 - MGP_C57BL6NJ_P0021715 Rab17 protein_coding protein_coding MGP_C57BL6NJ_T0021716.1 MGP_C57BL6NJ_G0016695.1 mouse_genomes_project 1 96046633 96056089 - MGP_C57BL6NJ_P0021716 Rab17 protein_coding protein_coding MGP_C57BL6NJ_T0021717.1 MGP_C57BL6NJ_G0016695.1 mouse_genomes_project 1 96047229 96057970 - Rab17 protein_coding processed_transcript MGP_C57BL6NJ_T0021718.1 MGP_C57BL6NJ_G0016695.1 mouse_genomes_project 1 96047352 96056039 - Rab17 protein_coding processed_transcript MGP_C57BL6NJ_T0021719.1 MGP_C57BL6NJ_G0016695.1 mouse_genomes_project 1 96048499 96058066 - MGP_C57BL6NJ_P0021719 Rab17 protein_coding protein_coding MGP_C57BL6NJ_T0000658.1 MGP_C57BL6NJ_G0000574.1 mouse_genomes_project 1 84076684 84078513 - TEC TEC MGP_C57BL6NJ_T0000634.1 MGP_C57BL6NJ_G0000550.1 mouse_genomes_project 1 69645716 69646855 - TEC TEC MGP_C57BL6NJ_T0012362.1 MGP_C57BL6NJ_G0010407.1 mouse_genomes_project 1 67736176 67736829 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000612.1 MGP_C57BL6NJ_G0000528.1 mouse_genomes_project 1 62157537 62160973 + TEC TEC MGP_C57BL6NJ_T0100846.1 MGP_C57BL6NJ_G0038892.1 mouse_genomes_project 1 11670622 11670753 - Gm26273 snoRNA snoRNA MGP_C57BL6NJ_T0000867.1 MGP_C57BL6NJ_G0000781.1 mouse_genomes_project 1 179751033 179752725 - TEC TEC MGP_C57BL6NJ_T0012626.1 MGP_C57BL6NJ_G0010671.1 mouse_genomes_project 1 180909400 180909742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019666.1 MGP_C57BL6NJ_G0016298.1 mouse_genomes_project 1 34315342 34318236 - MGP_C57BL6NJ_P0019666 Ccdc115 protein_coding protein_coding MGP_C57BL6NJ_T0019667.1 MGP_C57BL6NJ_G0016298.1 mouse_genomes_project 1 34315350 34317369 - Ccdc115 protein_coding retained_intron MGP_C57BL6NJ_T0100852.1 MGP_C57BL6NJ_G0038898.1 mouse_genomes_project 1 17911042 17911107 - Gm24633 snoRNA snoRNA MGP_C57BL6NJ_T0024557.1 MGP_C57BL6NJ_G0017317.1 mouse_genomes_project 1 198325976 198339860 + MGP_C57BL6NJ_P0024557 Slc30a10 protein_coding protein_coding MGP_C57BL6NJ_T0102690.1 MGP_C57BL6NJ_G0040485.1 mouse_genomes_project 1 184931482 184931734 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012237.1 MGP_C57BL6NJ_G0010282.1 mouse_genomes_project 1 33130277 33131190 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012222.1 MGP_C57BL6NJ_G0010267.1 mouse_genomes_project 1 28091770 28094252 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012251.1 MGP_C57BL6NJ_G0010296.1 mouse_genomes_project 1 34684004 34684152 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005880.1 MGP_C57BL6NJ_G0004936.1 mouse_genomes_project 1 50644675 50730524 + C230029F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0005881.1 MGP_C57BL6NJ_G0004936.1 mouse_genomes_project 1 50644675 50724366 + C230029F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0006195.1 MGP_C57BL6NJ_G0005182.1 mouse_genomes_project 1 197915566 197920404 - Gm34732 lincRNA lincRNA MGP_C57BL6NJ_T0009747.1 MGP_C57BL6NJ_G0007832.1 mouse_genomes_project 1 190653884 190654005 - Gm27458 miRNA miRNA MGP_C57BL6NJ_T0100869.1 MGP_C57BL6NJ_G0038915.1 mouse_genomes_project 1 59606327 59606457 - Gm22371 snoRNA snoRNA MGP_C57BL6NJ_T0012372.1 MGP_C57BL6NJ_G0010417.1 mouse_genomes_project 1 69817262 69818903 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011520.1 MGP_C57BL6NJ_G0009605.1 mouse_genomes_project 1 203754958 203755271 - Gm23153 misc_RNA misc_RNA MGP_C57BL6NJ_T0023167.1 MGP_C57BL6NJ_G0017007.1 mouse_genomes_project 1 164206383 164212085 + MGP_C57BL6NJ_P0023167 Teddm1b protein_coding protein_coding MGP_C57BL6NJ_T0000875.1 MGP_C57BL6NJ_G0000789.1 mouse_genomes_project 1 187464571 187466395 - TEC TEC MGP_C57BL6NJ_T0021295.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83704637 83785106 - MGP_C57BL6NJ_P0021295 Serpine2 protein_coding protein_coding MGP_C57BL6NJ_T0021296.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83707285 83733256 - MGP_C57BL6NJ_P0021296 Serpine2 protein_coding protein_coding MGP_C57BL6NJ_T0021297.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83713475 83787589 - MGP_C57BL6NJ_P0021297 Serpine2 protein_coding protein_coding MGP_C57BL6NJ_T0021298.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83726523 83785106 - Serpine2 protein_coding retained_intron MGP_C57BL6NJ_T0021299.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83728845 83732238 - Serpine2 protein_coding retained_intron MGP_C57BL6NJ_T0021300.1 MGP_C57BL6NJ_G0016599.1 mouse_genomes_project 1 83782513 83783642 - Serpine2 protein_coding retained_intron MGP_C57BL6NJ_T0002983.1 MGP_C57BL6NJ_G0002809.1 mouse_genomes_project 1 78769270 78774376 + Gm28294 antisense antisense MGP_C57BL6NJ_T0000494.1 MGP_C57BL6NJ_G0000413.1 mouse_genomes_project 1 4513244 4517272 + TEC TEC MGP_C57BL6NJ_T0006051.1 MGP_C57BL6NJ_G0005069.1 mouse_genomes_project 1 128761344 128764595 + Gm29359 lincRNA lincRNA MGP_C57BL6NJ_T0012469.1 MGP_C57BL6NJ_G0010514.1 mouse_genomes_project 1 111866003 111866620 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023703.1 MGP_C57BL6NJ_G0017107.1 mouse_genomes_project 1 177656206 177670742 + MGP_C57BL6NJ_P0023703 Tada1 protein_coding protein_coding MGP_C57BL6NJ_T0023704.1 MGP_C57BL6NJ_G0017107.1 mouse_genomes_project 1 177656426 177666057 + Tada1 protein_coding retained_intron MGP_C57BL6NJ_T0023705.1 MGP_C57BL6NJ_G0017107.1 mouse_genomes_project 1 177656433 177661237 + Tada1 protein_coding retained_intron MGP_C57BL6NJ_T0023706.1 MGP_C57BL6NJ_G0017107.1 mouse_genomes_project 1 177656448 177659580 + MGP_C57BL6NJ_P0023706 Tada1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012172.1 MGP_C57BL6NJ_G0010217.1 mouse_genomes_project 1 8536563 8537437 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023786.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181829616 181857991 - Nos1ap protein_coding processed_transcript MGP_C57BL6NJ_T0023788.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181847784 182141892 - MGP_C57BL6NJ_P0023788 Nos1ap protein_coding protein_coding MGP_C57BL6NJ_T0023789.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181847824 181851117 - Nos1ap protein_coding retained_intron MGP_C57BL6NJ_T0023790.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181849046 181854692 - Nos1ap protein_coding processed_transcript MGP_C57BL6NJ_T0023791.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181857803 182141395 - MGP_C57BL6NJ_P0023791 Nos1ap protein_coding protein_coding MGP_C57BL6NJ_T0023792.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181857949 182141328 - MGP_C57BL6NJ_P0023792 Nos1ap protein_coding protein_coding MGP_C57BL6NJ_T0023793.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181868515 181990256 - Nos1ap protein_coding processed_transcript MGP_C57BL6NJ_T0023794.1 MGP_C57BL6NJ_G0017132.1 mouse_genomes_project 1 181905367 182141880 - Nos1ap protein_coding retained_intron MGP_C57BL6NJ_T0099291.1 MGP_C57BL6NJ_G0037355.1 mouse_genomes_project 1 72104740 72119578 - Gm16076 sense_intronic sense_intronic MGP_C57BL6NJ_T0022937.1 MGP_C57BL6NJ_G0016964.1 mouse_genomes_project 1 152937638 153049113 - MGP_C57BL6NJ_P0022937 Cdc73 protein_coding protein_coding MGP_C57BL6NJ_T0022938.1 MGP_C57BL6NJ_G0016964.1 mouse_genomes_project 1 152944999 152984558 - Cdc73 protein_coding processed_transcript MGP_C57BL6NJ_T0022939.1 MGP_C57BL6NJ_G0016964.1 mouse_genomes_project 1 152976252 152980513 - Cdc73 protein_coding retained_intron MGP_C57BL6NJ_T0022940.1 MGP_C57BL6NJ_G0016964.1 mouse_genomes_project 1 152983446 152987737 - Cdc73 protein_coding retained_intron MGP_C57BL6NJ_T0022942.1 MGP_C57BL6NJ_G0016964.1 mouse_genomes_project 1 153036891 153048420 - MGP_C57BL6NJ_P0022942 Cdc73 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000765.1 MGP_C57BL6NJ_G0000680.1 mouse_genomes_project 1 142419244 142422453 - TEC TEC MGP_C57BL6NJ_T0020986.1 MGP_C57BL6NJ_G0016547.1 mouse_genomes_project 1 78116594 78120430 + MGP_C57BL6NJ_P0020986 Bcs1l protein_coding protein_coding MGP_C57BL6NJ_T0020987.1 MGP_C57BL6NJ_G0016547.1 mouse_genomes_project 1 78116605 78120751 + MGP_C57BL6NJ_P0020987 Bcs1l protein_coding protein_coding MGP_C57BL6NJ_T0020988.1 MGP_C57BL6NJ_G0016547.1 mouse_genomes_project 1 78116679 78120495 + MGP_C57BL6NJ_P0020988 Bcs1l protein_coding protein_coding MGP_C57BL6NJ_T0020989.1 MGP_C57BL6NJ_G0016547.1 mouse_genomes_project 1 78118571 78119214 + Bcs1l protein_coding retained_intron MGP_C57BL6NJ_T0006096.1 MGP_C57BL6NJ_G0005107.1 mouse_genomes_project 1 160148695 160154001 - Ptgs2os2 lincRNA lincRNA MGP_C57BL6NJ_T0102666.1 MGP_C57BL6NJ_G0040461.1 mouse_genomes_project 1 108481006 108569996 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100902.1 MGP_C57BL6NJ_G0038948.1 mouse_genomes_project 1 125768982 125769113 - Gm26080 snoRNA snoRNA MGP_C57BL6NJ_T0012520.1 MGP_C57BL6NJ_G0010565.1 mouse_genomes_project 1 129239817 129240000 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006167.1 MGP_C57BL6NJ_G0005165.1 mouse_genomes_project 1 193819402 193821915 + A430110L20Rik lincRNA lincRNA MGP_C57BL6NJ_T0006168.1 MGP_C57BL6NJ_G0005165.1 mouse_genomes_project 1 193819492 193821907 + A430110L20Rik lincRNA lincRNA MGP_C57BL6NJ_T0022778.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144591651 144597318 + Tnni1 protein_coding processed_transcript MGP_C57BL6NJ_T0022779.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144595282 144619581 + MGP_C57BL6NJ_P0022779 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022780.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613362 144624948 + MGP_C57BL6NJ_P0022780 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022781.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613381 144624593 + Tnni1 protein_coding processed_transcript MGP_C57BL6NJ_T0022782.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613381 144624948 + MGP_C57BL6NJ_P0022782 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022783.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613471 144624659 + MGP_C57BL6NJ_P0022783 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022784.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613479 144623694 + MGP_C57BL6NJ_P0022784 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022785.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144613793 144624948 + MGP_C57BL6NJ_P0022785 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0022786.1 MGP_C57BL6NJ_G0016932.1 mouse_genomes_project 1 144619015 144623868 + MGP_C57BL6NJ_P0022786 Tnni1 protein_coding protein_coding MGP_C57BL6NJ_T0000893.1 MGP_C57BL6NJ_G0000806.1 mouse_genomes_project 1 192450969 192453508 + TEC TEC MGP_C57BL6NJ_T0006212.1 MGP_C57BL6NJ_G0005196.1 mouse_genomes_project 1 203892174 203902397 + Gm30932 lincRNA lincRNA MGP_C57BL6NJ_T0023478.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172946416 173265875 - MGP_C57BL6NJ_P0023478 Dnm3 protein_coding protein_coding MGP_C57BL6NJ_T0023479.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172946421 172949686 - Dnm3 protein_coding retained_intron MGP_C57BL6NJ_T0023480.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172951229 173466590 - MGP_C57BL6NJ_P0023480 Dnm3 protein_coding protein_coding MGP_C57BL6NJ_T0023481.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172954139 173466590 - MGP_C57BL6NJ_P0023481 Dnm3 protein_coding protein_coding MGP_C57BL6NJ_T0023482.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172955442 172959942 - Dnm3 protein_coding retained_intron MGP_C57BL6NJ_T0023483.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172969916 173265819 - MGP_C57BL6NJ_P0023483 Dnm3 protein_coding protein_coding MGP_C57BL6NJ_T0023484.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 172980183 173097201 - Dnm3 protein_coding retained_intron MGP_C57BL6NJ_T0023485.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 173239779 173265834 - Dnm3 protein_coding processed_transcript MGP_C57BL6NJ_T0023486.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 173252767 173285226 - Dnm3 protein_coding processed_transcript MGP_C57BL6NJ_T0023487.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 173289571 173466568 - Dnm3 protein_coding retained_intron MGP_C57BL6NJ_T0023488.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 173356587 173403959 - Dnm3 protein_coding processed_transcript MGP_C57BL6NJ_T0023489.1 MGP_C57BL6NJ_G0017061.1 mouse_genomes_project 1 173378638 173381115 - Dnm3 protein_coding retained_intron MGP_C57BL6NJ_T0019194.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2066128 2181374 - MGP_C57BL6NJ_P0019194 Rgs20 protein_coding protein_coding MGP_C57BL6NJ_T0019195.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2066128 2233095 - MGP_C57BL6NJ_P0019195 Rgs20 protein_coding protein_coding MGP_C57BL6NJ_T0019196.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2066969 2180571 - MGP_C57BL6NJ_P0019196 Rgs20 protein_coding protein_coding MGP_C57BL6NJ_T0019197.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2067041 2181214 - MGP_C57BL6NJ_P0019197 Rgs20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019198.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2068909 2233092 - MGP_C57BL6NJ_P0019198 Rgs20 protein_coding protein_coding MGP_C57BL6NJ_T0019199.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2079953 2181214 - Rgs20 protein_coding retained_intron MGP_C57BL6NJ_T0019200.1 MGP_C57BL6NJ_G0016204.1 mouse_genomes_project 1 2226014 2233083 - Rgs20 protein_coding processed_transcript MGP_C57BL6NJ_T0021730.1 MGP_C57BL6NJ_G0016697.1 mouse_genomes_project 1 96236515 96239185 + Rbm44 protein_coding retained_intron MGP_C57BL6NJ_T0021731.1 MGP_C57BL6NJ_G0016697.1 mouse_genomes_project 1 96236527 96244152 + MGP_C57BL6NJ_P0021731 Rbm44 protein_coding protein_coding MGP_C57BL6NJ_T0021732.1 MGP_C57BL6NJ_G0016697.1 mouse_genomes_project 1 96236529 96267670 + MGP_C57BL6NJ_P0021732 Rbm44 protein_coding protein_coding MGP_C57BL6NJ_T0021733.1 MGP_C57BL6NJ_G0016697.1 mouse_genomes_project 1 96265503 96267168 + Rbm44 protein_coding retained_intron MGP_C57BL6NJ_T0020337.1 MGP_C57BL6NJ_G0016428.1 mouse_genomes_project 1 58755397 58756789 - MGP_C57BL6NJ_P0020337 Hsfy2 protein_coding protein_coding MGP_C57BL6NJ_T0100856.1 MGP_C57BL6NJ_G0038902.1 mouse_genomes_project 1 23407166 23407303 - Gm26418 snoRNA snoRNA MGP_C57BL6NJ_T0022981.1 MGP_C57BL6NJ_G0016972.1 mouse_genomes_project 1 153898552 153957368 - Rgs21 protein_coding processed_transcript MGP_C57BL6NJ_T0022982.1 MGP_C57BL6NJ_G0016972.1 mouse_genomes_project 1 153900513 153941528 - MGP_C57BL6NJ_P0022982 Rgs21 protein_coding protein_coding MGP_C57BL6NJ_T0024184.1 MGP_C57BL6NJ_G0017241.1 mouse_genomes_project 1 187783894 187790011 - MGP_C57BL6NJ_P0024184 Chml protein_coding protein_coding MGP_C57BL6NJ_T0023610.1 MGP_C57BL6NJ_G0017091.1 mouse_genomes_project 1 176332946 176359118 - MGP_C57BL6NJ_P0023610 Tbx19 protein_coding protein_coding MGP_C57BL6NJ_T0023611.1 MGP_C57BL6NJ_G0017091.1 mouse_genomes_project 1 176333980 176348200 - Tbx19 protein_coding processed_transcript MGP_C57BL6NJ_T0023612.1 MGP_C57BL6NJ_G0017091.1 mouse_genomes_project 1 176334038 176352085 - MGP_C57BL6NJ_P0023612 Tbx19 protein_coding protein_coding MGP_C57BL6NJ_T0023613.1 MGP_C57BL6NJ_G0017091.1 mouse_genomes_project 1 176337530 176347885 - Tbx19 protein_coding processed_transcript MGP_C57BL6NJ_T0019392.1 MGP_C57BL6NJ_G0016235.1 mouse_genomes_project 1 11523287 11561766 - MGP_C57BL6NJ_P0019392 Lactb2 protein_coding protein_coding MGP_C57BL6NJ_T0019393.1 MGP_C57BL6NJ_G0016235.1 mouse_genomes_project 1 11530045 11538462 - Lactb2 protein_coding retained_intron MGP_C57BL6NJ_T0000690.1 MGP_C57BL6NJ_G0000606.1 mouse_genomes_project 1 93576302 93578063 + TEC TEC MGP_C57BL6NJ_T0000919.1 MGP_C57BL6NJ_G0000831.1 mouse_genomes_project 1 200702013 200702506 - TEC TEC MGP_C57BL6NJ_T0022242.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 128996552 129075394 + MGP_C57BL6NJ_P0022242 Ccdc93 protein_coding protein_coding MGP_C57BL6NJ_T0022243.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 128996578 129017827 + Ccdc93 protein_coding retained_intron MGP_C57BL6NJ_T0022244.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 128996598 129018520 + Ccdc93 protein_coding processed_transcript MGP_C57BL6NJ_T0022245.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 128996611 129012791 + Ccdc93 protein_coding processed_transcript MGP_C57BL6NJ_T0022246.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 128996613 129068615 + MGP_C57BL6NJ_P0022246 Ccdc93 protein_coding protein_coding MGP_C57BL6NJ_T0022247.1 MGP_C57BL6NJ_G0016814.1 mouse_genomes_project 1 129058247 129066504 + Ccdc93 protein_coding retained_intron MGP_C57BL6NJ_T0006090.1 MGP_C57BL6NJ_G0005102.1 mouse_genomes_project 1 148471528 148498116 + 4933436E23Rik lincRNA lincRNA MGP_C57BL6NJ_T0012385.1 MGP_C57BL6NJ_G0010430.1 mouse_genomes_project 1 76948982 76949978 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005830.1 MGP_C57BL6NJ_G0004903.1 mouse_genomes_project 1 30269730 30271133 - Gm9898 lincRNA lincRNA MGP_C57BL6NJ_T0023356.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169978728 169998710 + MGP_C57BL6NJ_P0023356 Rfwd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023357.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169979011 170102905 + MGP_C57BL6NJ_P0023357 Rfwd2 protein_coding protein_coding MGP_C57BL6NJ_T0023358.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169979333 170040969 + MGP_C57BL6NJ_P0023358 Rfwd2 protein_coding protein_coding MGP_C57BL6NJ_T0023359.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169979375 169998733 + MGP_C57BL6NJ_P0023359 Rfwd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023360.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169986316 170017767 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023361.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 169997838 170058237 + MGP_C57BL6NJ_P0023361 Rfwd2 protein_coding protein_coding MGP_C57BL6NJ_T0023362.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170008302 170060128 + MGP_C57BL6NJ_P0023362 Rfwd2 protein_coding protein_coding MGP_C57BL6NJ_T0023363.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170017514 170024580 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023364.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170058275 170060724 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023365.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170058286 170080292 + MGP_C57BL6NJ_P0023365 Rfwd2 protein_coding protein_coding MGP_C57BL6NJ_T0023366.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170060073 170080371 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023367.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170076258 170081219 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023368.1 MGP_C57BL6NJ_G0017040.1 mouse_genomes_project 1 170097620 170100365 + Rfwd2 protein_coding retained_intron MGP_C57BL6NJ_T0023635.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705920 176802175 + MGP_C57BL6NJ_P0023635 Adcy10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023636.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705920 176801570 + MGP_C57BL6NJ_P0023636 Adcy10 protein_coding protein_coding MGP_C57BL6NJ_T0023637.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705920 176802545 + MGP_C57BL6NJ_P0023637 Adcy10 protein_coding protein_coding MGP_C57BL6NJ_T0023638.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705926 176801569 + MGP_C57BL6NJ_P0023638 Adcy10 protein_coding protein_coding MGP_C57BL6NJ_T0023639.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705930 176710262 + Adcy10 protein_coding processed_transcript MGP_C57BL6NJ_T0023640.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176705948 176801567 + MGP_C57BL6NJ_P0023640 Adcy10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023641.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176724661 176793515 + MGP_C57BL6NJ_P0023641 Adcy10 protein_coding protein_coding MGP_C57BL6NJ_T0023642.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176724677 176802393 + MGP_C57BL6NJ_P0023642 Adcy10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0023643.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176733133 176767271 + Adcy10 protein_coding retained_intron MGP_C57BL6NJ_T0023644.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176740103 176741915 + Adcy10 protein_coding retained_intron MGP_C57BL6NJ_T0023645.1 MGP_C57BL6NJ_G0017097.1 mouse_genomes_project 1 176767094 176775313 + Adcy10 protein_coding processed_transcript MGP_C57BL6NJ_T0000597.1 MGP_C57BL6NJ_G0000513.1 mouse_genomes_project 1 48904899 48905805 + TEC TEC MGP_C57BL6NJ_T0012584.1 MGP_C57BL6NJ_G0010629.1 mouse_genomes_project 1 161660685 161660926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000630.1 MGP_C57BL6NJ_G0000546.1 mouse_genomes_project 1 69611683 69614789 - TEC TEC MGP_C57BL6NJ_T0024697.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961643 205018295 + MGP_C57BL6NJ_P0024697 Ints7 protein_coding protein_coding MGP_C57BL6NJ_T0024698.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961734 205002250 + Ints7 protein_coding retained_intron MGP_C57BL6NJ_T0024699.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961749 205016390 + MGP_C57BL6NJ_P0024699 Ints7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024700.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961769 205000866 + MGP_C57BL6NJ_P0024700 Ints7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024701.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961769 205017353 + MGP_C57BL6NJ_P0024701 Ints7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024702.1 MGP_C57BL6NJ_G0017346.1 mouse_genomes_project 1 204961783 204974528 + Ints7 protein_coding retained_intron MGP_C57BL6NJ_T0009679.1 MGP_C57BL6NJ_G0007764.1 mouse_genomes_project 1 55755454 55755526 + Mir7681 miRNA miRNA MGP_C57BL6NJ_T0020708.1 MGP_C57BL6NJ_G0016492.1 mouse_genomes_project 1 67766633 67770385 - MGP_C57BL6NJ_P0020708 Cryge protein_coding protein_coding MGP_C57BL6NJ_T0012274.1 MGP_C57BL6NJ_G0010319.1 mouse_genomes_project 1 44793413 44793593 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005841.1 MGP_C57BL6NJ_G0004913.1 mouse_genomes_project 1 36046396 36051671 - Gm37146 lincRNA lincRNA MGP_C57BL6NJ_T0003132.1 MGP_C57BL6NJ_G0002926.1 mouse_genomes_project 1 203046452 203049922 - Gm26574 antisense antisense MGP_C57BL6NJ_T0023971.1 MGP_C57BL6NJ_G0017173.1 mouse_genomes_project 1 183570420 183593756 + Cd84 protein_coding processed_transcript MGP_C57BL6NJ_T0023972.1 MGP_C57BL6NJ_G0017173.1 mouse_genomes_project 1 183571263 183585787 + MGP_C57BL6NJ_P0023972 Cd84 protein_coding protein_coding MGP_C57BL6NJ_T0023973.1 MGP_C57BL6NJ_G0017173.1 mouse_genomes_project 1 183571331 183616879 + MGP_C57BL6NJ_P0023973 Cd84 protein_coding protein_coding MGP_C57BL6NJ_T0020104.1 MGP_C57BL6NJ_G0016384.1 mouse_genomes_project 1 46259869 46404834 - MGP_C57BL6NJ_P0020104 Col5a2 protein_coding protein_coding MGP_C57BL6NJ_T0020105.1 MGP_C57BL6NJ_G0016384.1 mouse_genomes_project 1 46276366 46281189 - Col5a2 protein_coding retained_intron MGP_C57BL6NJ_T0020106.1 MGP_C57BL6NJ_G0016384.1 mouse_genomes_project 1 46305596 46404834 - Col5a2 protein_coding retained_intron MGP_C57BL6NJ_T0020107.1 MGP_C57BL6NJ_G0016384.1 mouse_genomes_project 1 46308947 46313938 - Col5a2 protein_coding retained_intron MGP_C57BL6NJ_T0024093.1 MGP_C57BL6NJ_G0017205.1 mouse_genomes_project 1 185041691 185049204 - MGP_C57BL6NJ_P0024093 Fcer1a protein_coding protein_coding MGP_C57BL6NJ_T0024094.1 MGP_C57BL6NJ_G0017205.1 mouse_genomes_project 1 185041800 185049184 - MGP_C57BL6NJ_P0024094 Fcer1a protein_coding protein_coding MGP_C57BL6NJ_T0006098.1 MGP_C57BL6NJ_G0005109.1 mouse_genomes_project 1 161232857 161237169 + C730036E19Rik lincRNA lincRNA MGP_C57BL6NJ_T0003114.1 MGP_C57BL6NJ_G0002911.1 mouse_genomes_project 1 193212968 193226960 - Gm37768 antisense antisense MGP_C57BL6NJ_T0022103.1 MGP_C57BL6NJ_G0016783.1 mouse_genomes_project 1 114009304 114027476 + MGP_C57BL6NJ_P0022103 Serpinb8 protein_coding protein_coding MGP_C57BL6NJ_T0022104.1 MGP_C57BL6NJ_G0016783.1 mouse_genomes_project 1 114009304 114029818 + MGP_C57BL6NJ_P0022104 Serpinb8 protein_coding protein_coding MGP_C57BL6NJ_T0022105.1 MGP_C57BL6NJ_G0016783.1 mouse_genomes_project 1 114009344 114024722 + Serpinb8 protein_coding retained_intron MGP_C57BL6NJ_T0022106.1 MGP_C57BL6NJ_G0016783.1 mouse_genomes_project 1 114024451 114025897 + MGP_C57BL6NJ_P0022106 Serpinb8 protein_coding protein_coding MGP_C57BL6NJ_T0012582.1 MGP_C57BL6NJ_G0010627.1 mouse_genomes_project 1 161231409 161232604 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012185.1 MGP_C57BL6NJ_G0010230.1 mouse_genomes_project 1 14912933 14915726 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020082.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44925524 44927303 + Ercc5 protein_coding retained_intron MGP_C57BL6NJ_T0020083.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44925627 44958762 + Ercc5 protein_coding retained_intron MGP_C57BL6NJ_T0020084.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44925627 44958762 + MGP_C57BL6NJ_P0020084 Ercc5 protein_coding protein_coding MGP_C57BL6NJ_T0020085.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44925689 44939404 + Ercc5 protein_coding processed_transcript MGP_C57BL6NJ_T0020086.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44925712 44935815 + Ercc5 protein_coding processed_transcript MGP_C57BL6NJ_T0020087.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44934494 44944558 + Ercc5 protein_coding retained_intron MGP_C57BL6NJ_T0020088.1 MGP_C57BL6NJ_G0016380.1 mouse_genomes_project 1 44936389 44944777 + Ercc5 protein_coding retained_intron MGP_C57BL6NJ_T0002890.1 MGP_C57BL6NJ_G0002744.1 mouse_genomes_project 1 497676 548269 + Gm1992 antisense antisense MGP_C57BL6NJ_T0021748.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398099 96423847 + MGP_C57BL6NJ_P0021748 Scly protein_coding protein_coding MGP_C57BL6NJ_T0021749.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398121 96406326 + Scly protein_coding retained_intron MGP_C57BL6NJ_T0021750.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398129 96411523 + MGP_C57BL6NJ_P0021750 Scly protein_coding protein_coding MGP_C57BL6NJ_T0021751.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398130 96412631 + MGP_C57BL6NJ_P0021751 Scly protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021752.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398131 96414110 + Scly protein_coding retained_intron MGP_C57BL6NJ_T0021753.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398165 96411489 + MGP_C57BL6NJ_P0021753 Scly protein_coding protein_coding MGP_C57BL6NJ_T0021754.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398168 96411595 + MGP_C57BL6NJ_P0021754 Scly protein_coding protein_coding MGP_C57BL6NJ_T0021755.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96398188 96408251 + Scly protein_coding processed_transcript MGP_C57BL6NJ_T0021756.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96402746 96405684 + MGP_C57BL6NJ_P0021756 Scly protein_coding protein_coding MGP_C57BL6NJ_T0021757.1 MGP_C57BL6NJ_G0016700.1 mouse_genomes_project 1 96405611 96412652 + MGP_C57BL6NJ_P0021757 Scly protein_coding protein_coding MGP_C57BL6NJ_T0005993.1 MGP_C57BL6NJ_G0005023.1 mouse_genomes_project 1 95499163 95500271 - Gm28722 lincRNA lincRNA MGP_C57BL6NJ_T0012254.1 MGP_C57BL6NJ_G0010299.1 mouse_genomes_project 1 34928551 34928780 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000683.1 MGP_C57BL6NJ_G0000599.1 mouse_genomes_project 1 91521755 91524082 + TEC TEC MGP_C57BL6NJ_T0019466.1 MGP_C57BL6NJ_G0016251.1 mouse_genomes_project 1 15148190 15191145 - MGP_C57BL6NJ_P0019466 Jph1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019467.1 MGP_C57BL6NJ_G0016251.1 mouse_genomes_project 1 15181934 15290298 - MGP_C57BL6NJ_P0019467 Jph1 protein_coding protein_coding MGP_C57BL6NJ_T0012558.1 MGP_C57BL6NJ_G0010603.1 mouse_genomes_project 1 150486710 150487272 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012224.1 MGP_C57BL6NJ_G0010269.1 mouse_genomes_project 1 28589495 28590045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006022.1 MGP_C57BL6NJ_G0005048.1 mouse_genomes_project 1 112694915 112696725 - A530053M12Rik lincRNA lincRNA MGP_C57BL6NJ_T0099649.1 MGP_C57BL6NJ_G0037695.1 mouse_genomes_project 1 183201463 183201579 - Gm24871 snRNA snRNA MGP_C57BL6NJ_T0003089.1 MGP_C57BL6NJ_G0002892.1 mouse_genomes_project 1 177656948 177657603 - Gm15853 antisense antisense MGP_C57BL6NJ_T0000491.1 MGP_C57BL6NJ_G0000410.1 mouse_genomes_project 1 2595087 2597119 + TEC TEC MGP_C57BL6NJ_T0000784.1 MGP_C57BL6NJ_G0000698.1 mouse_genomes_project 1 146940588 146945810 + TEC TEC MGP_C57BL6NJ_T0000569.1 MGP_C57BL6NJ_G0000485.1 mouse_genomes_project 1 33774500 33776866 + TEC TEC MGP_C57BL6NJ_T0021631.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92646063 92677317 - MGP_C57BL6NJ_P0021631 Usp40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021632.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92646065 92714313 - MGP_C57BL6NJ_P0021632 Usp40 protein_coding protein_coding MGP_C57BL6NJ_T0021633.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92647387 92714296 - MGP_C57BL6NJ_P0021633 Usp40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021634.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92647387 92714296 - MGP_C57BL6NJ_P0021634 Usp40 protein_coding protein_coding MGP_C57BL6NJ_T0021635.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92650643 92652618 - Usp40 protein_coding retained_intron MGP_C57BL6NJ_T0021636.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92665954 92668129 - Usp40 protein_coding retained_intron MGP_C57BL6NJ_T0021637.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92688753 92714290 - Usp40 protein_coding retained_intron MGP_C57BL6NJ_T0021638.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92711656 92714312 - Usp40 protein_coding retained_intron MGP_C57BL6NJ_T0021639.1 MGP_C57BL6NJ_G0016667.1 mouse_genomes_project 1 92711656 92713991 - Usp40 protein_coding retained_intron MGP_C57BL6NJ_T0021106.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723357 78728816 + MGP_C57BL6NJ_P0021106 Stk16 protein_coding protein_coding MGP_C57BL6NJ_T0021107.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723365 78724391 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021108.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723367 78725445 + MGP_C57BL6NJ_P0021108 Stk16 protein_coding protein_coding MGP_C57BL6NJ_T0021109.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723389 78727452 + MGP_C57BL6NJ_P0021109 Stk16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021110.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723393 78725444 + MGP_C57BL6NJ_P0021110 Stk16 protein_coding protein_coding MGP_C57BL6NJ_T0021111.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723395 78727449 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021112.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723399 78726347 + Stk16 protein_coding processed_transcript MGP_C57BL6NJ_T0021113.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723573 78726438 + MGP_C57BL6NJ_P0021113 Stk16 protein_coding protein_coding MGP_C57BL6NJ_T0021114.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78723759 78727161 + MGP_C57BL6NJ_P0021114 Stk16 protein_coding protein_coding MGP_C57BL6NJ_T0021115.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78724481 78726397 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021116.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78724522 78726303 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021117.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78724524 78725615 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021118.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78725608 78726365 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021119.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78725833 78727226 + Stk16 protein_coding processed_transcript MGP_C57BL6NJ_T0021120.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78725841 78727123 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0021121.1 MGP_C57BL6NJ_G0016569.1 mouse_genomes_project 1 78726270 78727241 + Stk16 protein_coding retained_intron MGP_C57BL6NJ_T0100927.1 MGP_C57BL6NJ_G0038973.1 mouse_genomes_project 1 171935187 171935268 + Snord80 snoRNA snoRNA MGP_C57BL6NJ_T0006056.1 MGP_C57BL6NJ_G0005074.1 mouse_genomes_project 1 133392570 133395402 + Gm28706 lincRNA lincRNA MGP_C57BL6NJ_T0020140.1 MGP_C57BL6NJ_G0016392.1 mouse_genomes_project 1 52940401 52956238 + MGP_C57BL6NJ_P0020140 Sdpr protein_coding protein_coding MGP_C57BL6NJ_T0000905.1 MGP_C57BL6NJ_G0000818.1 mouse_genomes_project 1 195137438 195138196 - TEC TEC MGP_C57BL6NJ_T0000906.1 MGP_C57BL6NJ_G0000818.1 mouse_genomes_project 1 195137793 195138195 - TEC TEC MGP_C57BL6NJ_T0020689.1 MGP_C57BL6NJ_G0016488.1 mouse_genomes_project 1 67377277 67416529 + MGP_C57BL6NJ_P0020689 Ccnyl1 protein_coding protein_coding MGP_C57BL6NJ_T0020690.1 MGP_C57BL6NJ_G0016488.1 mouse_genomes_project 1 67377644 67414831 + MGP_C57BL6NJ_P0020690 Ccnyl1 protein_coding protein_coding MGP_C57BL6NJ_T0020691.1 MGP_C57BL6NJ_G0016488.1 mouse_genomes_project 1 67378005 67398271 + MGP_C57BL6NJ_P0020691 Ccnyl1 protein_coding protein_coding MGP_C57BL6NJ_T0020692.1 MGP_C57BL6NJ_G0016488.1 mouse_genomes_project 1 67378167 67416525 + MGP_C57BL6NJ_P0020692 Ccnyl1 protein_coding protein_coding MGP_C57BL6NJ_T0020693.1 MGP_C57BL6NJ_G0016488.1 mouse_genomes_project 1 67387786 67416534 + MGP_C57BL6NJ_P0020693 Ccnyl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003121.1 MGP_C57BL6NJ_G0002916.1 mouse_genomes_project 1 198095272 198101562 - Gm34882 antisense antisense MGP_C57BL6NJ_T0012246.1 MGP_C57BL6NJ_G0010291.1 mouse_genomes_project 1 34446449 34446924 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023170.1 MGP_C57BL6NJ_G0017009.1 mouse_genomes_project 1 164242453 164257514 + MGP_C57BL6NJ_P0023170 Glul protein_coding protein_coding MGP_C57BL6NJ_T0023171.1 MGP_C57BL6NJ_G0017009.1 mouse_genomes_project 1 164243115 164249650 + MGP_C57BL6NJ_P0023171 Glul protein_coding protein_coding MGP_C57BL6NJ_T0023172.1 MGP_C57BL6NJ_G0017009.1 mouse_genomes_project 1 164243625 164248866 + MGP_C57BL6NJ_P0023172 Glul protein_coding protein_coding MGP_C57BL6NJ_T0023173.1 MGP_C57BL6NJ_G0017009.1 mouse_genomes_project 1 164246307 164249539 + Glul protein_coding processed_transcript MGP_C57BL6NJ_T0023174.1 MGP_C57BL6NJ_G0017009.1 mouse_genomes_project 1 164248552 164249626 + Glul protein_coding retained_intron MGP_C57BL6NJ_T0021831.1 MGP_C57BL6NJ_G0016721.1 mouse_genomes_project 1 97834273 97838897 - MGP_C57BL6NJ_P0021831 Otos protein_coding protein_coding MGP_C57BL6NJ_T0021832.1 MGP_C57BL6NJ_G0016721.1 mouse_genomes_project 1 97834274 97838310 - Otos protein_coding retained_intron MGP_C57BL6NJ_T0003122.1 MGP_C57BL6NJ_G0002917.1 mouse_genomes_project 1 198169267 198170884 + 2010103J01Rik antisense antisense MGP_C57BL6NJ_T0021688.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95054832 95180502 - MGP_C57BL6NJ_P0021688 Iqca protein_coding protein_coding MGP_C57BL6NJ_T0021689.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95054835 95107532 - Iqca protein_coding processed_transcript MGP_C57BL6NJ_T0021690.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95055326 95180276 - MGP_C57BL6NJ_P0021690 Iqca protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021691.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95073334 95080792 - MGP_C57BL6NJ_P0021691 Iqca protein_coding protein_coding MGP_C57BL6NJ_T0021692.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95099653 95107531 - Iqca protein_coding processed_transcript MGP_C57BL6NJ_T0021693.1 MGP_C57BL6NJ_G0016689.1 mouse_genomes_project 1 95149336 95180502 - Iqca protein_coding processed_transcript MGP_C57BL6NJ_T0022931.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149448745 149849173 + MGP_C57BL6NJ_P0022931 Kcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022932.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149448782 149844463 + MGP_C57BL6NJ_P0022932 Kcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022933.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149448794 149844760 + MGP_C57BL6NJ_P0022933 Kcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022934.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149658493 149659505 + Kcnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022935.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149658658 149744706 + Kcnt2 protein_coding processed_transcript MGP_C57BL6NJ_T0022936.1 MGP_C57BL6NJ_G0016963.1 mouse_genomes_project 1 149735398 149802076 + MGP_C57BL6NJ_P0022936 Kcnt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000722.1 MGP_C57BL6NJ_G0000638.1 mouse_genomes_project 1 128377948 128381051 + TEC TEC MGP_C57BL6NJ_T0021861.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98153287 98181177 + MGP_C57BL6NJ_P0021861 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0021862.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98158586 98181500 + MGP_C57BL6NJ_P0021862 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0021863.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98171612 98183535 + MGP_C57BL6NJ_P0021863 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0021864.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98171612 98184744 + MGP_C57BL6NJ_P0021864 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0021865.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98173837 98184355 + MGP_C57BL6NJ_P0021865 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0021866.1 MGP_C57BL6NJ_G0016727.1 mouse_genomes_project 1 98177412 98184882 + MGP_C57BL6NJ_P0021866 Gpr35 protein_coding protein_coding MGP_C57BL6NJ_T0000812.1 MGP_C57BL6NJ_G0000726.1 mouse_genomes_project 1 161634037 161637059 - TEC TEC MGP_C57BL6NJ_T0022809.1 MGP_C57BL6NJ_G0016936.1 mouse_genomes_project 1 144774738 144784265 - MGP_C57BL6NJ_P0022809 Igfn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022810.1 MGP_C57BL6NJ_G0016936.1 mouse_genomes_project 1 144774745 144828266 - MGP_C57BL6NJ_P0022810 Igfn1 protein_coding protein_coding MGP_C57BL6NJ_T0022811.1 MGP_C57BL6NJ_G0016936.1 mouse_genomes_project 1 144775758 144803634 - MGP_C57BL6NJ_P0022811 Igfn1 protein_coding protein_coding MGP_C57BL6NJ_T0002982.1 MGP_C57BL6NJ_G0002808.1 mouse_genomes_project 1 78460108 78465367 + Gm15841 antisense antisense MGP_C57BL6NJ_T0000899.1 MGP_C57BL6NJ_G0000812.1 mouse_genomes_project 1 194008703 194010014 + TEC TEC MGP_C57BL6NJ_T0009702.1 MGP_C57BL6NJ_G0007787.1 mouse_genomes_project 1 90276272 90276350 + Gm25472 miRNA miRNA MGP_C57BL6NJ_T0006144.1 MGP_C57BL6NJ_G0005144.1 mouse_genomes_project 1 177362073 177362234 + Gm37923 lincRNA lincRNA MGP_C57BL6NJ_T0019495.1 MGP_C57BL6NJ_G0016262.1 mouse_genomes_project 1 19268379 19275504 - MGP_C57BL6NJ_P0019495 Il17f protein_coding protein_coding MGP_C57BL6NJ_T0019496.1 MGP_C57BL6NJ_G0016262.1 mouse_genomes_project 1 19268912 19270788 - Il17f protein_coding retained_intron MGP_C57BL6NJ_T0019497.1 MGP_C57BL6NJ_G0016262.1 mouse_genomes_project 1 19268964 19281776 - MGP_C57BL6NJ_P0019497 Il17f protein_coding protein_coding MGP_C57BL6NJ_T0000697.1 MGP_C57BL6NJ_G0000613.1 mouse_genomes_project 1 97039149 97042439 + TEC TEC MGP_C57BL6NJ_T0009751.1 MGP_C57BL6NJ_G0007836.1 mouse_genomes_project 1 198170399 198170466 + Mir194-1 miRNA miRNA MGP_C57BL6NJ_T0000590.1 MGP_C57BL6NJ_G0000506.1 mouse_genomes_project 1 43318456 43319132 + TEC TEC MGP_C57BL6NJ_T0012629.1 MGP_C57BL6NJ_G0010674.1 mouse_genomes_project 1 182525661 182525997 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012339.1 MGP_C57BL6NJ_G0010384.1 mouse_genomes_project 1 62957209 62959118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012622.1 MGP_C57BL6NJ_G0010667.1 mouse_genomes_project 1 178069860 178074375 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023785.1 MGP_C57BL6NJ_G0017131.1 mouse_genomes_project 1 181825147 181833261 - MGP_C57BL6NJ_P0023785 Gm7694 protein_coding protein_coding MGP_C57BL6NJ_T0021151.1 MGP_C57BL6NJ_G0016574.1 mouse_genomes_project 1 78790061 78797524 - MGP_C57BL6NJ_P0021151 Resp18 protein_coding protein_coding MGP_C57BL6NJ_T0021152.1 MGP_C57BL6NJ_G0016574.1 mouse_genomes_project 1 78790063 78792126 - Resp18 protein_coding retained_intron MGP_C57BL6NJ_T0021153.1 MGP_C57BL6NJ_G0016574.1 mouse_genomes_project 1 78790173 78797425 - MGP_C57BL6NJ_P0021153 Resp18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021154.1 MGP_C57BL6NJ_G0016574.1 mouse_genomes_project 1 78791932 78797393 - Resp18 protein_coding retained_intron MGP_C57BL6NJ_T0020277.1 MGP_C57BL6NJ_G0016417.1 mouse_genomes_project 1 56394827 56485184 - MGP_C57BL6NJ_P0020277 Pgap1 protein_coding protein_coding MGP_C57BL6NJ_T0020278.1 MGP_C57BL6NJ_G0016417.1 mouse_genomes_project 1 56452697 56485186 - Pgap1 protein_coding retained_intron MGP_C57BL6NJ_T0020279.1 MGP_C57BL6NJ_G0016417.1 mouse_genomes_project 1 56454516 56457763 - Pgap1 protein_coding retained_intron MGP_C57BL6NJ_T0020280.1 MGP_C57BL6NJ_G0016417.1 mouse_genomes_project 1 56482104 56485129 - Pgap1 protein_coding retained_intron MGP_C57BL6NJ_T0020878.1 MGP_C57BL6NJ_G0016528.1 mouse_genomes_project 1 76239469 76256429 - MGP_C57BL6NJ_P0020878 Igfbp5 protein_coding protein_coding MGP_C57BL6NJ_T0020879.1 MGP_C57BL6NJ_G0016528.1 mouse_genomes_project 1 76239602 76255820 - Igfbp5 protein_coding processed_transcript MGP_C57BL6NJ_T0099628.1 MGP_C57BL6NJ_G0037674.1 mouse_genomes_project 1 140603812 140603928 + Gm26034 snRNA snRNA MGP_C57BL6NJ_T0020036.1 MGP_C57BL6NJ_G0016372.1 mouse_genomes_project 1 44474138 44491033 + MGP_C57BL6NJ_P0020036 1500015O10Rik protein_coding protein_coding MGP_C57BL6NJ_T0024011.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907296 183960693 + MGP_C57BL6NJ_P0024011 Dcaf8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024012.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907301 183953623 + Dcaf8 protein_coding retained_intron MGP_C57BL6NJ_T0024013.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907330 183961406 + MGP_C57BL6NJ_P0024013 Dcaf8 protein_coding protein_coding MGP_C57BL6NJ_T0024014.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907352 183954850 + Dcaf8 protein_coding retained_intron MGP_C57BL6NJ_T0024015.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907354 183961365 + MGP_C57BL6NJ_P0024015 Dcaf8 protein_coding protein_coding MGP_C57BL6NJ_T0024016.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183907390 183962288 + MGP_C57BL6NJ_P0024016 Dcaf8 protein_coding protein_coding MGP_C57BL6NJ_T0024017.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183908160 183954850 + Dcaf8 protein_coding retained_intron MGP_C57BL6NJ_T0024018.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183937406 183939705 + Dcaf8 protein_coding retained_intron MGP_C57BL6NJ_T0024019.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183937510 183957613 + MGP_C57BL6NJ_P0024019 Dcaf8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024020.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183942014 183946551 + Dcaf8 protein_coding retained_intron MGP_C57BL6NJ_T0024021.1 MGP_C57BL6NJ_G0017181.1 mouse_genomes_project 1 183952422 183962904 + MGP_C57BL6NJ_P0024021 Dcaf8 protein_coding protein_coding MGP_C57BL6NJ_T0000610.1 MGP_C57BL6NJ_G0000526.1 mouse_genomes_project 1 61755041 61756679 - TEC TEC MGP_C57BL6NJ_T0020856.1 MGP_C57BL6NJ_G0016520.1 mouse_genomes_project 1 75576365 75602892 - MGP_C57BL6NJ_P0020856 Pecr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020857.1 MGP_C57BL6NJ_G0016520.1 mouse_genomes_project 1 75576370 75602946 - MGP_C57BL6NJ_P0020857 Pecr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020858.1 MGP_C57BL6NJ_G0016520.1 mouse_genomes_project 1 75576370 75602947 - MGP_C57BL6NJ_P0020858 Pecr protein_coding protein_coding MGP_C57BL6NJ_T0020859.1 MGP_C57BL6NJ_G0016520.1 mouse_genomes_project 1 75584194 75602892 - MGP_C57BL6NJ_P0020859 Pecr protein_coding protein_coding MGP_C57BL6NJ_T0012328.1 MGP_C57BL6NJ_G0010373.1 mouse_genomes_project 1 59749420 59752174 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021553.1 MGP_C57BL6NJ_G0016656.1 mouse_genomes_project 1 91939713 91985865 + MGP_C57BL6NJ_P0021553 Efhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021554.1 MGP_C57BL6NJ_G0016656.1 mouse_genomes_project 1 91939713 91985868 + MGP_C57BL6NJ_P0021554 Efhd1 protein_coding protein_coding MGP_C57BL6NJ_T0021555.1 MGP_C57BL6NJ_G0016656.1 mouse_genomes_project 1 91984254 91984771 + Efhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0012364.1 MGP_C57BL6NJ_G0010409.1 mouse_genomes_project 1 68241342 68241650 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099305.1 MGP_C57BL6NJ_G0037368.1 mouse_genomes_project 1 162889218 162894340 - Gm15479 sense_intronic sense_intronic MGP_C57BL6NJ_T0022732.1 MGP_C57BL6NJ_G0016922.1 mouse_genomes_project 1 143925325 143934609 - MGP_C57BL6NJ_P0022732 Gpr37l1 protein_coding protein_coding MGP_C57BL6NJ_T0022369.1 MGP_C57BL6NJ_G0016839.1 mouse_genomes_project 1 138954583 139005747 - MGP_C57BL6NJ_P0022369 Zp3r protein_coding protein_coding MGP_C57BL6NJ_T0022370.1 MGP_C57BL6NJ_G0016839.1 mouse_genomes_project 1 138954583 139005747 - MGP_C57BL6NJ_P0022370 Zp3r protein_coding protein_coding MGP_C57BL6NJ_T0022371.1 MGP_C57BL6NJ_G0016839.1 mouse_genomes_project 1 138954586 139005738 - MGP_C57BL6NJ_P0022371 Zp3r protein_coding protein_coding MGP_C57BL6NJ_T0099579.1 MGP_C57BL6NJ_G0037625.1 mouse_genomes_project 1 31299289 31299396 - Gm23032 snRNA snRNA MGP_C57BL6NJ_T0024653.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204330829 204336806 - Mfsd7b protein_coding retained_intron MGP_C57BL6NJ_T0024654.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204330829 204350947 - MGP_C57BL6NJ_P0024654 Mfsd7b protein_coding protein_coding MGP_C57BL6NJ_T0024655.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204330831 204350756 - MGP_C57BL6NJ_P0024655 Mfsd7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024656.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204330832 204333438 - Mfsd7b protein_coding retained_intron MGP_C57BL6NJ_T0024657.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204337874 204340142 - Mfsd7b protein_coding retained_intron MGP_C57BL6NJ_T0024658.1 MGP_C57BL6NJ_G0017335.1 mouse_genomes_project 1 204349697 204350913 - MGP_C57BL6NJ_P0024658 Mfsd7b protein_coding protein_coding MGP_C57BL6NJ_T0100921.1 MGP_C57BL6NJ_G0038967.1 mouse_genomes_project 1 171932980 171933060 + Gm26224 snoRNA snoRNA MGP_C57BL6NJ_T0023429.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971239 171990150 + MGP_C57BL6NJ_P0023429 Cenpl protein_coding protein_coding MGP_C57BL6NJ_T0023430.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971293 171989768 + MGP_C57BL6NJ_P0023430 Cenpl protein_coding protein_coding MGP_C57BL6NJ_T0023431.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971293 171989768 + MGP_C57BL6NJ_P0023431 Cenpl protein_coding protein_coding MGP_C57BL6NJ_T0023432.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971418 171989754 + MGP_C57BL6NJ_P0023432 Cenpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023433.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971476 171989754 + MGP_C57BL6NJ_P0023433 Cenpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023434.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971492 171990154 + MGP_C57BL6NJ_P0023434 Cenpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023435.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971511 171985930 + MGP_C57BL6NJ_P0023435 Cenpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023436.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171971542 171989768 + MGP_C57BL6NJ_P0023436 Cenpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023437.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171972931 171973520 + Cenpl protein_coding processed_transcript MGP_C57BL6NJ_T0023438.1 MGP_C57BL6NJ_G0017051.1 mouse_genomes_project 1 171976539 171985841 + Cenpl protein_coding processed_transcript MGP_C57BL6NJ_T0023813.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182563067 182581018 - MGP_C57BL6NJ_P0023813 Fcgr2b protein_coding protein_coding MGP_C57BL6NJ_T0023814.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182565258 182581018 - MGP_C57BL6NJ_P0023814 Fcgr2b protein_coding protein_coding MGP_C57BL6NJ_T0023815.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182565434 182566331 - Fcgr2b protein_coding processed_transcript MGP_C57BL6NJ_T0023816.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182565469 182581438 - MGP_C57BL6NJ_P0023816 Fcgr2b protein_coding protein_coding MGP_C57BL6NJ_T0023817.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182565693 182581018 - MGP_C57BL6NJ_P0023817 Fcgr2b protein_coding protein_coding MGP_C57BL6NJ_T0023818.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182569912 182581018 - Fcgr2b protein_coding retained_intron MGP_C57BL6NJ_T0023819.1 MGP_C57BL6NJ_G0017140.1 mouse_genomes_project 1 182574839 182581018 - Fcgr2b protein_coding retained_intron MGP_C57BL6NJ_T0009758.1 MGP_C57BL6NJ_G0007843.1 mouse_genomes_project 1 208587740 208587828 + Mir29c miRNA miRNA MGP_C57BL6NJ_T0005839.1 MGP_C57BL6NJ_G0004911.1 mouse_genomes_project 1 35844091 35860508 + lincRNA lincRNA MGP_C57BL6NJ_T0000490.1 MGP_C57BL6NJ_G0000409.1 mouse_genomes_project 1 2096375 2098490 - TEC TEC MGP_C57BL6NJ_T0003051.1 MGP_C57BL6NJ_G0002863.1 mouse_genomes_project 1 155964989 156050513 - Gm29514 antisense antisense MGP_C57BL6NJ_T0003052.1 MGP_C57BL6NJ_G0002863.1 mouse_genomes_project 1 155973481 156050622 - Gm29514 antisense antisense MGP_C57BL6NJ_T0000887.1 MGP_C57BL6NJ_G0000801.1 mouse_genomes_project 1 189361718 189364483 - TEC TEC MGP_C57BL6NJ_T0012346.1 MGP_C57BL6NJ_G0010391.1 mouse_genomes_project 1 63550326 63550878 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006109.1 MGP_C57BL6NJ_G0005118.1 mouse_genomes_project 1 164627628 164642275 + 4930532M18Rik lincRNA lincRNA MGP_C57BL6NJ_T0006110.1 MGP_C57BL6NJ_G0005118.1 mouse_genomes_project 1 164628941 164642096 + 4930532M18Rik lincRNA lincRNA MGP_C57BL6NJ_T0023857.1 MGP_C57BL6NJ_G0017149.1 mouse_genomes_project 1 182889448 182890774 + MGP_C57BL6NJ_P0023857 Apoa2 protein_coding protein_coding MGP_C57BL6NJ_T0023858.1 MGP_C57BL6NJ_G0017149.1 mouse_genomes_project 1 182889476 182890773 + MGP_C57BL6NJ_P0023858 Apoa2 protein_coding protein_coding MGP_C57BL6NJ_T0023859.1 MGP_C57BL6NJ_G0017149.1 mouse_genomes_project 1 182889478 182890768 + MGP_C57BL6NJ_P0023859 Apoa2 protein_coding protein_coding MGP_C57BL6NJ_T0023860.1 MGP_C57BL6NJ_G0017149.1 mouse_genomes_project 1 182889485 182890732 + MGP_C57BL6NJ_P0023860 Apoa2 protein_coding protein_coding MGP_C57BL6NJ_T0099570.1 MGP_C57BL6NJ_G0037616.1 mouse_genomes_project 1 7007717 7007820 + Gm24765 snRNA snRNA MGP_C57BL6NJ_T0021655.1 MGP_C57BL6NJ_G0016677.1 mouse_genomes_project 1 92980731 92981782 - MGP_C57BL6NJ_P0021655 Dnajb3 protein_coding protein_coding MGP_C57BL6NJ_T0102649.1 MGP_C57BL6NJ_G0040444.1 mouse_genomes_project 1 90053376 90056105 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0020162.1 MGP_C57BL6NJ_G0016395.1 mouse_genomes_project 1 53664174 53788748 + MGP_C57BL6NJ_P0020162 Stat4 protein_coding protein_coding MGP_C57BL6NJ_T0020163.1 MGP_C57BL6NJ_G0016395.1 mouse_genomes_project 1 53688452 53788743 + MGP_C57BL6NJ_P0020163 Stat4 protein_coding protein_coding MGP_C57BL6NJ_T0020164.1 MGP_C57BL6NJ_G0016395.1 mouse_genomes_project 1 53688835 53755148 + Stat4 protein_coding retained_intron MGP_C57BL6NJ_T0020165.1 MGP_C57BL6NJ_G0016395.1 mouse_genomes_project 1 53787007 53788747 + Stat4 protein_coding retained_intron MGP_C57BL6NJ_T0000603.1 MGP_C57BL6NJ_G0000519.1 mouse_genomes_project 1 56685497 56686907 - TEC TEC MGP_C57BL6NJ_T0000844.1 MGP_C57BL6NJ_G0000758.1 mouse_genomes_project 1 171447392 171450888 - TEC TEC MGP_C57BL6NJ_T0006178.1 MGP_C57BL6NJ_G0005171.1 mouse_genomes_project 1 195737381 195737535 + Gm38079 lincRNA lincRNA MGP_C57BL6NJ_T0005898.1 MGP_C57BL6NJ_G0004949.1 mouse_genomes_project 1 59288374 59290435 + 1700126A01Rik lincRNA lincRNA MGP_C57BL6NJ_T0024613.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202832196 202881525 - MGP_C57BL6NJ_P0024613 Cenpf protein_coding protein_coding MGP_C57BL6NJ_T0024614.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202834286 202840447 - MGP_C57BL6NJ_P0024614 Cenpf protein_coding protein_coding MGP_C57BL6NJ_T0024615.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202852163 202881525 - MGP_C57BL6NJ_P0024615 Cenpf protein_coding protein_coding MGP_C57BL6NJ_T0024616.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202861192 202864581 - Cenpf protein_coding retained_intron MGP_C57BL6NJ_T0024617.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202877264 202881474 - MGP_C57BL6NJ_P0024617 Cenpf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024618.1 MGP_C57BL6NJ_G0017328.1 mouse_genomes_project 1 202880498 202881525 - Cenpf protein_coding retained_intron MGP_C57BL6NJ_T0102687.1 MGP_C57BL6NJ_G0040482.1 mouse_genomes_project 1 183219849 183221539 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024632.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204009203 204231110 - MGP_C57BL6NJ_P0024632 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024633.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204083690 204147252 - MGP_C57BL6NJ_P0024633 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024634.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204083690 204231133 - MGP_C57BL6NJ_P0024634 Rps6kc1 protein_coding protein_coding MGP_C57BL6NJ_T0024635.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204083690 204231101 - MGP_C57BL6NJ_P0024635 Rps6kc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024636.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204106190 204157800 - Rps6kc1 protein_coding retained_intron MGP_C57BL6NJ_T0024637.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204108569 204231097 - Rps6kc1 protein_coding retained_intron MGP_C57BL6NJ_T0024638.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204122084 204123660 - Rps6kc1 protein_coding retained_intron MGP_C57BL6NJ_T0024639.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204190222 204219496 - Rps6kc1 protein_coding processed_transcript MGP_C57BL6NJ_T0024640.1 MGP_C57BL6NJ_G0017332.1 mouse_genomes_project 1 204203668 204231132 - MGP_C57BL6NJ_P0024640 Rps6kc1 protein_coding protein_coding MGP_C57BL6NJ_T0020327.1 MGP_C57BL6NJ_G0016425.1 mouse_genomes_project 1 57239718 57251012 + MGP_C57BL6NJ_P0020327 Mars2 protein_coding protein_coding MGP_C57BL6NJ_T0024030.1 MGP_C57BL6NJ_G0017184.1 mouse_genomes_project 1 183993473 184028294 - MGP_C57BL6NJ_P0024030 Atp1a4 protein_coding protein_coding MGP_C57BL6NJ_T0024031.1 MGP_C57BL6NJ_G0017184.1 mouse_genomes_project 1 184016773 184023847 - Atp1a4 protein_coding processed_transcript MGP_C57BL6NJ_T0100861.1 MGP_C57BL6NJ_G0038907.1 mouse_genomes_project 1 39857509 39857724 + Gm24826 snoRNA snoRNA MGP_C57BL6NJ_T0005914.1 MGP_C57BL6NJ_G0004963.1 mouse_genomes_project 1 65369075 65380089 - Gm4208 lincRNA lincRNA MGP_C57BL6NJ_T0005965.1 MGP_C57BL6NJ_G0005000.1 mouse_genomes_project 1 84128780 84136124 + 9830004L10Rik lincRNA lincRNA MGP_C57BL6NJ_T0005966.1 MGP_C57BL6NJ_G0005000.1 mouse_genomes_project 1 84131045 84136124 + 9830004L10Rik lincRNA lincRNA MGP_C57BL6NJ_T0005967.1 MGP_C57BL6NJ_G0005000.1 mouse_genomes_project 1 84131067 84136169 + 9830004L10Rik lincRNA lincRNA MGP_C57BL6NJ_T0019268.1 MGP_C57BL6NJ_G0016218.1 mouse_genomes_project 1 7241121 7283146 - MGP_C57BL6NJ_P0019268 Mybl1 protein_coding protein_coding MGP_C57BL6NJ_T0019269.1 MGP_C57BL6NJ_G0016218.1 mouse_genomes_project 1 7243237 7282961 - MGP_C57BL6NJ_P0019269 Mybl1 protein_coding protein_coding MGP_C57BL6NJ_T0019270.1 MGP_C57BL6NJ_G0016218.1 mouse_genomes_project 1 7249832 7252311 - Mybl1 protein_coding retained_intron MGP_C57BL6NJ_T0019271.1 MGP_C57BL6NJ_G0016218.1 mouse_genomes_project 1 7251972 7257162 - Mybl1 protein_coding retained_intron MGP_C57BL6NJ_T0019272.1 MGP_C57BL6NJ_G0016218.1 mouse_genomes_project 1 7255563 7282591 - MGP_C57BL6NJ_P0019272 Mybl1 protein_coding protein_coding MGP_C57BL6NJ_T0012349.1 MGP_C57BL6NJ_G0010394.1 mouse_genomes_project 1 64040589 64040979 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000881.1 MGP_C57BL6NJ_G0000795.1 mouse_genomes_project 1 189079837 189080561 + TEC TEC MGP_C57BL6NJ_T0099294.1 MGP_C57BL6NJ_G0037358.1 mouse_genomes_project 1 77791059 77793362 + Gm29358 sense_intronic sense_intronic MGP_C57BL6NJ_T0099295.1 MGP_C57BL6NJ_G0037358.1 mouse_genomes_project 1 77791097 77794324 + Gm29358 sense_intronic sense_intronic MGP_C57BL6NJ_T0021903.1 MGP_C57BL6NJ_G0016736.1 mouse_genomes_project 1 98579351 98611579 + MGP_C57BL6NJ_P0021903 Ppp1r7 protein_coding protein_coding MGP_C57BL6NJ_T0021904.1 MGP_C57BL6NJ_G0016736.1 mouse_genomes_project 1 98580152 98589130 + MGP_C57BL6NJ_P0021904 Ppp1r7 protein_coding protein_coding MGP_C57BL6NJ_T0021905.1 MGP_C57BL6NJ_G0016736.1 mouse_genomes_project 1 98580204 98589061 + MGP_C57BL6NJ_P0021905 Ppp1r7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000595.1 MGP_C57BL6NJ_G0000511.1 mouse_genomes_project 1 48144886 48148756 - TEC TEC MGP_C57BL6NJ_T0102129.1 MGP_C57BL6NJ_G0040171.1 mouse_genomes_project 1 167360995 167363633 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102130.1 MGP_C57BL6NJ_G0040171.1 mouse_genomes_project 1 167361317 167361648 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0006017.1 MGP_C57BL6NJ_G0005044.1 mouse_genomes_project 1 107874723 107876857 - Gm28187 lincRNA lincRNA MGP_C57BL6NJ_T0012443.1 MGP_C57BL6NJ_G0010488.1 mouse_genomes_project 1 99905704 99908005 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005977.1 MGP_C57BL6NJ_G0005008.1 mouse_genomes_project 1 90525342 90543156 - Gm28100 lincRNA lincRNA MGP_C57BL6NJ_T0017454.1 MGP_C57BL6NJ_G0015488.1 mouse_genomes_project 1 43379904 43386270 - Pantr2 processed_transcript lincRNA MGP_C57BL6NJ_T0017455.1 MGP_C57BL6NJ_G0015488.1 mouse_genomes_project 1 43379915 43380896 - Pantr2 processed_transcript TEC MGP_C57BL6NJ_T0102640.1 MGP_C57BL6NJ_G0040435.1 mouse_genomes_project 1 55108759 55111315 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102670.1 MGP_C57BL6NJ_G0040465.1 mouse_genomes_project 1 111489772 111490015 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000600.1 MGP_C57BL6NJ_G0000516.1 mouse_genomes_project 1 55693060 55694517 + TEC TEC MGP_C57BL6NJ_T0022135.1 MGP_C57BL6NJ_G0016794.1 mouse_genomes_project 1 125622027 125633940 + MGP_C57BL6NJ_P0022135 Nifk protein_coding protein_coding MGP_C57BL6NJ_T0022136.1 MGP_C57BL6NJ_G0016794.1 mouse_genomes_project 1 125622042 125633059 + MGP_C57BL6NJ_P0022136 Nifk protein_coding protein_coding MGP_C57BL6NJ_T0022137.1 MGP_C57BL6NJ_G0016794.1 mouse_genomes_project 1 125622340 125629498 + MGP_C57BL6NJ_P0022137 Nifk protein_coding protein_coding MGP_C57BL6NJ_T0012184.1 MGP_C57BL6NJ_G0010229.1 mouse_genomes_project 1 14899292 14899711 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009743.1 MGP_C57BL6NJ_G0007828.1 mouse_genomes_project 1 183354263 183354324 - Mir7683 miRNA miRNA MGP_C57BL6NJ_T0100857.1 MGP_C57BL6NJ_G0038903.1 mouse_genomes_project 1 25619472 25619578 + Gm24064 snoRNA snoRNA MGP_C57BL6NJ_T0019427.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14319460 14636847 - MGP_C57BL6NJ_P0019427 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019428.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14319587 14636769 - MGP_C57BL6NJ_P0019428 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019429.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14319590 14636769 - MGP_C57BL6NJ_P0019429 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019430.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14319596 14636847 - MGP_C57BL6NJ_P0019430 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019431.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14319602 14637603 - MGP_C57BL6NJ_P0019431 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019432.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14438670 14636752 - MGP_C57BL6NJ_P0019432 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019433.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14439461 14470349 - Stau2 protein_coding processed_transcript MGP_C57BL6NJ_T0019434.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14439554 14636781 - MGP_C57BL6NJ_P0019434 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019435.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14439562 14636794 - MGP_C57BL6NJ_P0019435 Stau2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019436.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14440961 14586509 - MGP_C57BL6NJ_P0019436 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019437.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14485946 14636811 - MGP_C57BL6NJ_P0019437 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019438.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14533796 14637571 - MGP_C57BL6NJ_P0019438 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019439.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14554458 14636801 - MGP_C57BL6NJ_P0019439 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019440.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14554847 14637512 - MGP_C57BL6NJ_P0019440 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0019441.1 MGP_C57BL6NJ_G0016246.1 mouse_genomes_project 1 14554956 14637511 - MGP_C57BL6NJ_P0019441 Stau2 protein_coding protein_coding MGP_C57BL6NJ_T0005850.1 MGP_C57BL6NJ_G0004921.1 mouse_genomes_project 1 40200161 40206686 - 1700066B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0005851.1 MGP_C57BL6NJ_G0004921.1 mouse_genomes_project 1 40203409 40208317 - 1700066B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0005852.1 MGP_C57BL6NJ_G0004921.1 mouse_genomes_project 1 40203414 40208321 - 1700066B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006111.1 MGP_C57BL6NJ_G0005119.1 mouse_genomes_project 1 165409884 165470144 - Gm29282 lincRNA lincRNA MGP_C57BL6NJ_T0000633.1 MGP_C57BL6NJ_G0000549.1 mouse_genomes_project 1 69639702 69642356 - TEC TEC MGP_C57BL6NJ_T0000681.1 MGP_C57BL6NJ_G0000597.1 mouse_genomes_project 1 91472556 91475727 + TEC TEC MGP_C57BL6NJ_T0012593.1 MGP_C57BL6NJ_G0010638.1 mouse_genomes_project 1 166313725 166313984 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019769.1 MGP_C57BL6NJ_G0016318.1 mouse_genomes_project 1 36664118 36673395 - MGP_C57BL6NJ_P0019769 Ankrd39 protein_coding protein_coding MGP_C57BL6NJ_T0021320.1 MGP_C57BL6NJ_G0016603.1 mouse_genomes_project 1 85108618 85342340 + MGP_C57BL6NJ_P0021320 Nyap2 protein_coding protein_coding MGP_C57BL6NJ_T0021321.1 MGP_C57BL6NJ_G0016603.1 mouse_genomes_project 1 85108872 85342315 + MGP_C57BL6NJ_P0021321 Nyap2 protein_coding protein_coding MGP_C57BL6NJ_T0021322.1 MGP_C57BL6NJ_G0016603.1 mouse_genomes_project 1 85108983 85315219 + MGP_C57BL6NJ_P0021322 Nyap2 protein_coding protein_coding MGP_C57BL6NJ_T0021323.1 MGP_C57BL6NJ_G0016603.1 mouse_genomes_project 1 85108990 85343502 + MGP_C57BL6NJ_P0021323 Nyap2 protein_coding protein_coding MGP_C57BL6NJ_T0021324.1 MGP_C57BL6NJ_G0016603.1 mouse_genomes_project 1 85109249 85400364 + MGP_C57BL6NJ_P0021324 Nyap2 protein_coding protein_coding MGP_C57BL6NJ_T0021640.1 MGP_C57BL6NJ_G0016668.1 mouse_genomes_project 1 92730996 92732016 + MGP_C57BL6NJ_P0021640 protein_coding protein_coding MGP_C57BL6NJ_T0012661.1 MGP_C57BL6NJ_G0010706.1 mouse_genomes_project 1 202239932 202242398 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021421.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90088010 90222982 + MGP_C57BL6NJ_P0021421 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021422.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157327 90215421 + MGP_C57BL6NJ_P0021422 protein_coding protein_coding MGP_C57BL6NJ_T0021423.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157347 90210228 + MGP_C57BL6NJ_P0021423 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021424.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157353 90195726 + MGP_C57BL6NJ_P0021424 protein_coding protein_coding MGP_C57BL6NJ_T0021425.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157353 90223062 + MGP_C57BL6NJ_P0021425 protein_coding protein_coding MGP_C57BL6NJ_T0021426.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157353 90215432 + MGP_C57BL6NJ_P0021426 protein_coding protein_coding MGP_C57BL6NJ_T0021427.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157354 90214999 + MGP_C57BL6NJ_P0021427 protein_coding protein_coding MGP_C57BL6NJ_T0021428.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90157389 90223832 + MGP_C57BL6NJ_P0021428 protein_coding protein_coding MGP_C57BL6NJ_T0021431.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90184488 90195324 + protein_coding processed_transcript MGP_C57BL6NJ_T0021432.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90186380 90191934 + protein_coding retained_intron MGP_C57BL6NJ_T0021433.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90207798 90213531 + protein_coding retained_intron MGP_C57BL6NJ_T0021434.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90208156 90223270 + MGP_C57BL6NJ_P0021434 protein_coding protein_coding MGP_C57BL6NJ_T0021435.1 MGP_C57BL6NJ_G0016625.1 mouse_genomes_project 1 90217305 90221859 + MGP_C57BL6NJ_P0021435 protein_coding protein_coding MGP_C57BL6NJ_T0005932.1 MGP_C57BL6NJ_G0004977.1 mouse_genomes_project 1 75087110 75128611 + lincRNA lincRNA MGP_C57BL6NJ_T0005933.1 MGP_C57BL6NJ_G0004977.1 mouse_genomes_project 1 75087395 75089059 + lincRNA lincRNA MGP_C57BL6NJ_T0005934.1 MGP_C57BL6NJ_G0004977.1 mouse_genomes_project 1 75087496 75128463 + lincRNA lincRNA MGP_C57BL6NJ_T0021273.1 MGP_C57BL6NJ_G0016593.1 mouse_genomes_project 1 82452800 82466275 + MGP_C57BL6NJ_P0021273 Utp14b protein_coding protein_coding MGP_C57BL6NJ_T0021274.1 MGP_C57BL6NJ_G0016593.1 mouse_genomes_project 1 82453202 82462347 + MGP_C57BL6NJ_P0021274 Utp14b protein_coding protein_coding MGP_C57BL6NJ_T0024347.1 MGP_C57BL6NJ_G0017269.1 mouse_genomes_project 1 192880293 192936027 - MGP_C57BL6NJ_P0024347 Stum protein_coding protein_coding MGP_C57BL6NJ_T0024348.1 MGP_C57BL6NJ_G0017269.1 mouse_genomes_project 1 192889217 192936064 - MGP_C57BL6NJ_P0024348 Stum protein_coding protein_coding MGP_C57BL6NJ_T0023545.1 MGP_C57BL6NJ_G0017072.1 mouse_genomes_project 1 174041977 174108400 - MGP_C57BL6NJ_P0023545 Mroh9 protein_coding protein_coding MGP_C57BL6NJ_T0099604.1 MGP_C57BL6NJ_G0037650.1 mouse_genomes_project 1 75572206 75572397 + Gm25939 snRNA snRNA MGP_C57BL6NJ_T0003031.1 MGP_C57BL6NJ_G0002847.1 mouse_genomes_project 1 140644181 140647478 + Gm29629 antisense antisense MGP_C57BL6NJ_T0000832.1 MGP_C57BL6NJ_G0000746.1 mouse_genomes_project 1 168577823 168809377 + TEC TEC MGP_C57BL6NJ_T0019609.1 MGP_C57BL6NJ_G0016290.1 mouse_genomes_project 1 30802130 30803581 + MGP_C57BL6NJ_P0019609 Pih1d3 protein_coding protein_coding MGP_C57BL6NJ_T0012215.1 MGP_C57BL6NJ_G0010260.1 mouse_genomes_project 1 24575064 24575634 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023284.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167155264 167180515 - MGP_C57BL6NJ_P0023284 Tor3a protein_coding protein_coding MGP_C57BL6NJ_T0023285.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167155264 167180515 - MGP_C57BL6NJ_P0023285 Tor3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023286.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167155264 167180484 - MGP_C57BL6NJ_P0023286 Tor3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023287.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167156670 167180473 - MGP_C57BL6NJ_P0023287 Tor3a protein_coding protein_coding MGP_C57BL6NJ_T0023288.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167157319 167160106 - Tor3a protein_coding processed_transcript MGP_C57BL6NJ_T0023289.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167163532 167172896 - Tor3a protein_coding processed_transcript MGP_C57BL6NJ_T0023290.1 MGP_C57BL6NJ_G0017029.1 mouse_genomes_project 1 167172857 167180494 - MGP_C57BL6NJ_P0023290 Tor3a protein_coding protein_coding MGP_C57BL6NJ_T0012311.1 MGP_C57BL6NJ_G0010356.1 mouse_genomes_project 1 53617813 53618411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021447.1 MGP_C57BL6NJ_G0016630.1 mouse_genomes_project 1 90446301 90460696 + MGP_C57BL6NJ_P0021447 Itm2c protein_coding protein_coding MGP_C57BL6NJ_T0021448.1 MGP_C57BL6NJ_G0016630.1 mouse_genomes_project 1 90446638 90460710 + MGP_C57BL6NJ_P0021448 Itm2c protein_coding protein_coding MGP_C57BL6NJ_T0021449.1 MGP_C57BL6NJ_G0016630.1 mouse_genomes_project 1 90458181 90459812 + Itm2c protein_coding retained_intron MGP_C57BL6NJ_T0022966.1 MGP_C57BL6NJ_G0016969.1 mouse_genomes_project 1 153351419 153356243 - MGP_C57BL6NJ_P0022966 Rgs2 protein_coding protein_coding MGP_C57BL6NJ_T0022967.1 MGP_C57BL6NJ_G0016969.1 mouse_genomes_project 1 153353761 153356217 - MGP_C57BL6NJ_P0022967 Rgs2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022968.1 MGP_C57BL6NJ_G0016969.1 mouse_genomes_project 1 153353964 153356114 - MGP_C57BL6NJ_P0022968 Rgs2 protein_coding protein_coding MGP_C57BL6NJ_T0022969.1 MGP_C57BL6NJ_G0016969.1 mouse_genomes_project 1 153354598 153356203 - Rgs2 protein_coding retained_intron MGP_C57BL6NJ_T0099658.1 MGP_C57BL6NJ_G0037704.1 mouse_genomes_project 1 193317096 193317204 + Gm24836 snRNA snRNA MGP_C57BL6NJ_T0006169.1 MGP_C57BL6NJ_G0005166.1 mouse_genomes_project 1 194309231 194331581 + lincRNA lincRNA MGP_C57BL6NJ_T0006170.1 MGP_C57BL6NJ_G0005166.1 mouse_genomes_project 1 194309257 194322143 + lincRNA lincRNA MGP_C57BL6NJ_T0100847.1 MGP_C57BL6NJ_G0038893.1 mouse_genomes_project 1 13017451 13017571 - Gm26345 snoRNA snoRNA MGP_C57BL6NJ_T0005859.1 MGP_C57BL6NJ_G0004926.1 mouse_genomes_project 1 42867353 42867816 - Gm29664 lincRNA lincRNA MGP_C57BL6NJ_T0021813.1 MGP_C57BL6NJ_G0016712.1 mouse_genomes_project 1 97624877 97633424 - MGP_C57BL6NJ_P0021813 Olfr1416 protein_coding protein_coding MGP_C57BL6NJ_T0021814.1 MGP_C57BL6NJ_G0016712.1 mouse_genomes_project 1 97624877 97649308 - MGP_C57BL6NJ_P0021814 Olfr1416 protein_coding protein_coding MGP_C57BL6NJ_T0022552.1 MGP_C57BL6NJ_G0016881.1 mouse_genomes_project 1 141438554 141498485 + MGP_C57BL6NJ_P0022552 Lrrn2 protein_coding protein_coding MGP_C57BL6NJ_T0022553.1 MGP_C57BL6NJ_G0016881.1 mouse_genomes_project 1 141438636 141495630 + Lrrn2 protein_coding processed_transcript MGP_C57BL6NJ_T0019981.1 MGP_C57BL6NJ_G0016358.1 mouse_genomes_project 1 40833046 40851733 + MGP_C57BL6NJ_P0019981 Il1rl1 protein_coding protein_coding MGP_C57BL6NJ_T0019982.1 MGP_C57BL6NJ_G0016358.1 mouse_genomes_project 1 40839864 40844683 + MGP_C57BL6NJ_P0019982 Il1rl1 protein_coding protein_coding MGP_C57BL6NJ_T0019983.1 MGP_C57BL6NJ_G0016358.1 mouse_genomes_project 1 40842902 40872838 + MGP_C57BL6NJ_P0019983 Il1rl1 protein_coding protein_coding MGP_C57BL6NJ_T0019984.1 MGP_C57BL6NJ_G0016358.1 mouse_genomes_project 1 40843051 40853158 + MGP_C57BL6NJ_P0019984 Il1rl1 protein_coding protein_coding MGP_C57BL6NJ_T0019985.1 MGP_C57BL6NJ_G0016358.1 mouse_genomes_project 1 40843903 40872819 + MGP_C57BL6NJ_P0019985 Il1rl1 protein_coding protein_coding MGP_C57BL6NJ_T0100885.1 MGP_C57BL6NJ_G0038931.1 mouse_genomes_project 1 90651439 90651561 + Gm22786 snoRNA snoRNA MGP_C57BL6NJ_T0000701.1 MGP_C57BL6NJ_G0000617.1 mouse_genomes_project 1 100842622 100845160 + TEC TEC MGP_C57BL6NJ_T0002919.1 MGP_C57BL6NJ_G0002763.1 mouse_genomes_project 1 34494853 34495363 - 1700101I19Rik antisense antisense MGP_C57BL6NJ_T0002920.1 MGP_C57BL6NJ_G0002763.1 mouse_genomes_project 1 34494875 34495265 - 1700101I19Rik antisense antisense MGP_C57BL6NJ_T0020713.1 MGP_C57BL6NJ_G0016496.1 mouse_genomes_project 1 67818142 67820694 - Cryga protein_coding retained_intron MGP_C57BL6NJ_T0020714.1 MGP_C57BL6NJ_G0016496.1 mouse_genomes_project 1 67818142 67820707 - MGP_C57BL6NJ_P0020714 Cryga protein_coding protein_coding MGP_C57BL6NJ_T0023949.1 MGP_C57BL6NJ_G0017165.1 mouse_genomes_project 1 183132829 183160951 + MGP_C57BL6NJ_P0023949 F11r protein_coding protein_coding MGP_C57BL6NJ_T0023950.1 MGP_C57BL6NJ_G0017165.1 mouse_genomes_project 1 183132873 183155752 + F11r protein_coding retained_intron MGP_C57BL6NJ_T0023951.1 MGP_C57BL6NJ_G0017165.1 mouse_genomes_project 1 183159219 183160015 + F11r protein_coding retained_intron MGP_C57BL6NJ_T0012653.1 MGP_C57BL6NJ_G0010698.1 mouse_genomes_project 1 194832331 194833115 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009681.1 MGP_C57BL6NJ_G0007766.1 mouse_genomes_project 1 63055073 63055179 - Gm23762 miRNA miRNA MGP_C57BL6NJ_T0022451.1 MGP_C57BL6NJ_G0016861.1 mouse_genomes_project 1 140146687 140173000 + MGP_C57BL6NJ_P0022451 Rab7b protein_coding protein_coding MGP_C57BL6NJ_T0022452.1 MGP_C57BL6NJ_G0016861.1 mouse_genomes_project 1 140146699 140170318 + MGP_C57BL6NJ_P0022452 Rab7b protein_coding protein_coding MGP_C57BL6NJ_T0022453.1 MGP_C57BL6NJ_G0016861.1 mouse_genomes_project 1 140146730 140169230 + MGP_C57BL6NJ_P0022453 Rab7b protein_coding protein_coding MGP_C57BL6NJ_T0022454.1 MGP_C57BL6NJ_G0016861.1 mouse_genomes_project 1 140146758 140169397 + MGP_C57BL6NJ_P0022454 Rab7b protein_coding protein_coding MGP_C57BL6NJ_T0022455.1 MGP_C57BL6NJ_G0016861.1 mouse_genomes_project 1 140154626 140163714 + Rab7b protein_coding processed_transcript MGP_C57BL6NJ_T0019529.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963296 21509988 - MGP_C57BL6NJ_P0019529 protein_coding protein_coding MGP_C57BL6NJ_T0019530.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963296 21509988 - MGP_C57BL6NJ_P0019530 protein_coding protein_coding MGP_C57BL6NJ_T0019531.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963296 21509988 - MGP_C57BL6NJ_P0019531 protein_coding protein_coding MGP_C57BL6NJ_T0019532.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963296 21509988 - MGP_C57BL6NJ_P0019532 protein_coding protein_coding MGP_C57BL6NJ_T0019533.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963296 21509988 - MGP_C57BL6NJ_P0019533 protein_coding protein_coding MGP_C57BL6NJ_T0019534.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20963960 21003196 - MGP_C57BL6NJ_P0019534 protein_coding protein_coding MGP_C57BL6NJ_T0019535.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20965467 21509988 - MGP_C57BL6NJ_P0019535 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019536.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 20965467 21138709 - MGP_C57BL6NJ_P0019536 protein_coding protein_coding MGP_C57BL6NJ_T0019537.1 MGP_C57BL6NJ_G0016273.1 mouse_genomes_project 1 21142835 21509988 - MGP_C57BL6NJ_P0019537 protein_coding protein_coding MGP_C57BL6NJ_T0003087.1 MGP_C57BL6NJ_G0002890.1 mouse_genomes_project 1 177109971 177110861 - Gm37469 antisense antisense MGP_C57BL6NJ_T0002946.1 MGP_C57BL6NJ_G0002784.1 mouse_genomes_project 1 45520458 45525763 - 4930521E06Rik antisense antisense MGP_C57BL6NJ_T0000870.1 MGP_C57BL6NJ_G0000784.1 mouse_genomes_project 1 183039682 183040972 + TEC TEC MGP_C57BL6NJ_T0009666.1 MGP_C57BL6NJ_G0007751.1 mouse_genomes_project 1 34308109 34308188 - Mir5103 miRNA miRNA MGP_C57BL6NJ_T0102137.1 MGP_C57BL6NJ_G0040174.1 mouse_genomes_project 1 195278317 195279251 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102138.1 MGP_C57BL6NJ_G0040174.1 mouse_genomes_project 1 195278739 195288587 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0012490.1 MGP_C57BL6NJ_G0010535.1 mouse_genomes_project 1 118632610 118633184 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012462.1 MGP_C57BL6NJ_G0010507.1 mouse_genomes_project 1 108490309 108490576 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019300.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7628985 7642505 - MGP_C57BL6NJ_P0019300 Cops5 protein_coding protein_coding MGP_C57BL6NJ_T0019301.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7629227 7639506 - MGP_C57BL6NJ_P0019301 Cops5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019302.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7631582 7642319 - MGP_C57BL6NJ_P0019302 Cops5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019303.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7635071 7642527 - MGP_C57BL6NJ_P0019303 Cops5 protein_coding protein_coding MGP_C57BL6NJ_T0019304.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7635297 7642316 - Cops5 protein_coding retained_intron MGP_C57BL6NJ_T0019305.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7637417 7642546 - Cops5 protein_coding retained_intron MGP_C57BL6NJ_T0019306.1 MGP_C57BL6NJ_G0016224.1 mouse_genomes_project 1 7641657 7642323 - Cops5 protein_coding retained_intron MGP_C57BL6NJ_T0006069.1 MGP_C57BL6NJ_G0005086.1 mouse_genomes_project 1 143365704 143369957 - Gm26783 lincRNA lincRNA MGP_C57BL6NJ_T0024412.1 MGP_C57BL6NJ_G0017287.1 mouse_genomes_project 1 194406313 194421827 + protein_coding retained_intron MGP_C57BL6NJ_T0024413.1 MGP_C57BL6NJ_G0017287.1 mouse_genomes_project 1 194408361 194439431 + MGP_C57BL6NJ_P0024413 protein_coding protein_coding MGP_C57BL6NJ_T0024414.1 MGP_C57BL6NJ_G0017287.1 mouse_genomes_project 1 194410065 194413780 + protein_coding processed_transcript MGP_C57BL6NJ_T0012492.1 MGP_C57BL6NJ_G0010537.1 mouse_genomes_project 1 118900567 118901405 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022270.1 MGP_C57BL6NJ_G0016820.1 mouse_genomes_project 1 133645243 133858373 + MGP_C57BL6NJ_P0022270 Gpr39 protein_coding protein_coding MGP_C57BL6NJ_T0022271.1 MGP_C57BL6NJ_G0016820.1 mouse_genomes_project 1 133822961 133857684 + Gpr39 protein_coding processed_transcript MGP_C57BL6NJ_T0012583.1 MGP_C57BL6NJ_G0010628.1 mouse_genomes_project 1 161648289 161649158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012509.1 MGP_C57BL6NJ_G0010554.1 mouse_genomes_project 1 126558013 126558993 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012290.1 MGP_C57BL6NJ_G0010335.1 mouse_genomes_project 1 46945719 46946184 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000860.1 MGP_C57BL6NJ_G0000774.1 mouse_genomes_project 1 176037330 176040851 - TEC TEC MGP_C57BL6NJ_T0012053.1 MGP_C57BL6NJ_G0010138.1 mouse_genomes_project 1 113938293 113960279 + MGP_C57BL6NJ_P0012053 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012054.1 MGP_C57BL6NJ_G0010138.1 mouse_genomes_project 1 113938317 113962328 + polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012055.1 MGP_C57BL6NJ_G0010138.1 mouse_genomes_project 1 113941661 113960129 + MGP_C57BL6NJ_P0012055 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0024333.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666603 192669665 - Psen2 protein_coding processed_transcript MGP_C57BL6NJ_T0024334.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666603 192696194 - MGP_C57BL6NJ_P0024334 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0024335.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666603 192693032 - MGP_C57BL6NJ_P0024335 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0024336.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666605 192669168 - Psen2 protein_coding retained_intron MGP_C57BL6NJ_T0024337.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666605 192685844 - MGP_C57BL6NJ_P0024337 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0024338.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192666988 192669662 - Psen2 protein_coding processed_transcript MGP_C57BL6NJ_T0024339.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192667042 192688044 - MGP_C57BL6NJ_P0024339 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0024340.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192667044 192685651 - MGP_C57BL6NJ_P0024340 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0024341.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192667067 192669625 - Psen2 protein_coding processed_transcript MGP_C57BL6NJ_T0024342.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192672123 192696138 - Psen2 protein_coding retained_intron MGP_C57BL6NJ_T0024343.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192674773 192678701 - Psen2 protein_coding retained_intron MGP_C57BL6NJ_T0024344.1 MGP_C57BL6NJ_G0017267.1 mouse_genomes_project 1 192685531 192703332 - MGP_C57BL6NJ_P0024344 Psen2 protein_coding protein_coding MGP_C57BL6NJ_T0020089.1 MGP_C57BL6NJ_G0016381.1 mouse_genomes_project 1 44982053 44996962 - MGP_C57BL6NJ_P0020089 Mettl21e protein_coding protein_coding MGP_C57BL6NJ_T0020090.1 MGP_C57BL6NJ_G0016381.1 mouse_genomes_project 1 44984426 44996914 - Mettl21e protein_coding retained_intron MGP_C57BL6NJ_T0021838.1 MGP_C57BL6NJ_G0016723.1 mouse_genomes_project 1 98060525 98103870 - MGP_C57BL6NJ_P0021838 Ankmy1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021839.1 MGP_C57BL6NJ_G0016723.1 mouse_genomes_project 1 98069487 98104193 - MGP_C57BL6NJ_P0021839 Ankmy1 protein_coding protein_coding MGP_C57BL6NJ_T0021840.1 MGP_C57BL6NJ_G0016723.1 mouse_genomes_project 1 98069487 98104193 - MGP_C57BL6NJ_P0021840 Ankmy1 protein_coding protein_coding MGP_C57BL6NJ_T0012332.1 MGP_C57BL6NJ_G0010377.1 mouse_genomes_project 1 60987654 60993638 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000720.1 MGP_C57BL6NJ_G0000636.1 mouse_genomes_project 1 127073087 127074013 - TEC TEC MGP_C57BL6NJ_T0024577.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218424 200238742 + Gpatch2 protein_coding processed_transcript MGP_C57BL6NJ_T0024578.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218427 200364835 + MGP_C57BL6NJ_P0024578 Gpatch2 protein_coding protein_coding MGP_C57BL6NJ_T0024579.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218427 200363048 + MGP_C57BL6NJ_P0024579 Gpatch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024580.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218438 200365102 + MGP_C57BL6NJ_P0024580 Gpatch2 protein_coding protein_coding MGP_C57BL6NJ_T0024581.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218454 200311319 + Gpatch2 protein_coding retained_intron MGP_C57BL6NJ_T0024582.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218460 200237328 + MGP_C57BL6NJ_P0024582 Gpatch2 protein_coding protein_coding MGP_C57BL6NJ_T0024583.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218462 200236812 + MGP_C57BL6NJ_P0024583 Gpatch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024584.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200218659 200364131 + MGP_C57BL6NJ_P0024584 Gpatch2 protein_coding protein_coding MGP_C57BL6NJ_T0024585.1 MGP_C57BL6NJ_G0017323.1 mouse_genomes_project 1 200229090 200364835 + MGP_C57BL6NJ_P0024585 Gpatch2 protein_coding protein_coding MGP_C57BL6NJ_T0022185.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 126986439 127091286 - MGP_C57BL6NJ_P0022185 Epb41l5 protein_coding protein_coding MGP_C57BL6NJ_T0022186.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 126989532 127091284 - MGP_C57BL6NJ_P0022186 Epb41l5 protein_coding protein_coding MGP_C57BL6NJ_T0022187.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 126995628 127041628 - Epb41l5 protein_coding retained_intron MGP_C57BL6NJ_T0022188.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127019520 127021739 - Epb41l5 protein_coding retained_intron MGP_C57BL6NJ_T0022189.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127032067 127091350 - MGP_C57BL6NJ_P0022189 Epb41l5 protein_coding protein_coding MGP_C57BL6NJ_T0022190.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127036399 127090967 - MGP_C57BL6NJ_P0022190 Epb41l5 protein_coding protein_coding MGP_C57BL6NJ_T0022191.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127036767 127040563 - Epb41l5 protein_coding retained_intron MGP_C57BL6NJ_T0022192.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127059951 127076379 - Epb41l5 protein_coding retained_intron MGP_C57BL6NJ_T0022193.1 MGP_C57BL6NJ_G0016801.1 mouse_genomes_project 1 127064247 127090974 - MGP_C57BL6NJ_P0022193 Epb41l5 protein_coding protein_coding MGP_C57BL6NJ_T0005905.1 MGP_C57BL6NJ_G0004954.1 mouse_genomes_project 1 61798492 61802618 - Gm26813 lincRNA lincRNA MGP_C57BL6NJ_T0005922.1 MGP_C57BL6NJ_G0004967.1 mouse_genomes_project 1 66613527 66617802 + Gm13749 lincRNA lincRNA MGP_C57BL6NJ_T0012575.1 MGP_C57BL6NJ_G0010620.1 mouse_genomes_project 1 158897869 158901842 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019632.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33609457 33662404 - MGP_C57BL6NJ_P0019632 Zfp451 protein_coding protein_coding MGP_C57BL6NJ_T0019633.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33609457 33662262 - MGP_C57BL6NJ_P0019633 Zfp451 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019634.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33625480 33653309 - MGP_C57BL6NJ_P0019634 Zfp451 protein_coding protein_coding MGP_C57BL6NJ_T0019635.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33626993 33631875 - MGP_C57BL6NJ_P0019635 Zfp451 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019636.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33627126 33662303 - MGP_C57BL6NJ_P0019636 Zfp451 protein_coding protein_coding MGP_C57BL6NJ_T0019637.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33630115 33662088 - Zfp451 protein_coding processed_transcript MGP_C57BL6NJ_T0019638.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33634391 33648687 - Zfp451 protein_coding processed_transcript MGP_C57BL6NJ_T0019639.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33640055 33662447 - MGP_C57BL6NJ_P0019639 Zfp451 protein_coding protein_coding MGP_C57BL6NJ_T0019640.1 MGP_C57BL6NJ_G0016295.1 mouse_genomes_project 1 33661403 33662472 - Zfp451 protein_coding retained_intron MGP_C57BL6NJ_T0099664.1 MGP_C57BL6NJ_G0037710.1 mouse_genomes_project 1 206178128 206178244 + Gm22265 snRNA snRNA MGP_C57BL6NJ_T0022818.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144878623 144948655 + MGP_C57BL6NJ_P0022818 Cacna1s protein_coding protein_coding MGP_C57BL6NJ_T0022819.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144878657 144948660 + MGP_C57BL6NJ_P0022819 Cacna1s protein_coding protein_coding MGP_C57BL6NJ_T0022820.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144878774 144948947 + MGP_C57BL6NJ_P0022820 Cacna1s protein_coding protein_coding MGP_C57BL6NJ_T0022821.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144899399 144948654 + MGP_C57BL6NJ_P0022821 Cacna1s protein_coding protein_coding MGP_C57BL6NJ_T0022822.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144934498 144941147 + Cacna1s protein_coding retained_intron MGP_C57BL6NJ_T0022823.1 MGP_C57BL6NJ_G0016939.1 mouse_genomes_project 1 144946380 144948654 + Cacna1s protein_coding processed_transcript MGP_C57BL6NJ_T0005963.1 MGP_C57BL6NJ_G0004998.1 mouse_genomes_project 1 82620717 83096537 - lincRNA lincRNA MGP_C57BL6NJ_T0021793.1 MGP_C57BL6NJ_G0016709.1 mouse_genomes_project 1 96921162 96967428 + MGP_C57BL6NJ_P0021793 Twist2 protein_coding protein_coding MGP_C57BL6NJ_T0021794.1 MGP_C57BL6NJ_G0016709.1 mouse_genomes_project 1 96921171 96923696 + MGP_C57BL6NJ_P0021794 Twist2 protein_coding protein_coding MGP_C57BL6NJ_T0012471.1 MGP_C57BL6NJ_G0010516.1 mouse_genomes_project 1 112241934 112244334 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012214.1 MGP_C57BL6NJ_G0010259.1 mouse_genomes_project 1 24158724 24159168 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099607.1 MGP_C57BL6NJ_G0037653.1 mouse_genomes_project 1 84064424 84064531 + Gm23934 snRNA snRNA MGP_C57BL6NJ_T0012234.1 MGP_C57BL6NJ_G0010279.1 mouse_genomes_project 1 32895396 32897845 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000753.1 MGP_C57BL6NJ_G0000669.1 mouse_genomes_project 1 138241575 138244447 + TEC TEC MGP_C57BL6NJ_T0012643.1 MGP_C57BL6NJ_G0010688.1 mouse_genomes_project 1 189981816 189982426 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024502.1 MGP_C57BL6NJ_G0017304.1 mouse_genomes_project 1 196138139 196160452 + MGP_C57BL6NJ_P0024502 Taf1a protein_coding protein_coding MGP_C57BL6NJ_T0024503.1 MGP_C57BL6NJ_G0017304.1 mouse_genomes_project 1 196138143 196155784 + MGP_C57BL6NJ_P0024503 Taf1a protein_coding protein_coding MGP_C57BL6NJ_T0024504.1 MGP_C57BL6NJ_G0017304.1 mouse_genomes_project 1 196138224 196161296 + MGP_C57BL6NJ_P0024504 Taf1a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024505.1 MGP_C57BL6NJ_G0017304.1 mouse_genomes_project 1 196159707 196161297 + MGP_C57BL6NJ_P0024505 Taf1a protein_coding protein_coding MGP_C57BL6NJ_T0005833.1 MGP_C57BL6NJ_G0004906.1 mouse_genomes_project 1 33024193 33026895 - Gm37591 lincRNA lincRNA MGP_C57BL6NJ_T0005978.1 MGP_C57BL6NJ_G0005009.1 mouse_genomes_project 1 91778043 91778806 + lincRNA lincRNA MGP_C57BL6NJ_T0003014.1 MGP_C57BL6NJ_G0002835.1 mouse_genomes_project 1 112851720 112884726 + D630008O14Rik antisense antisense MGP_C57BL6NJ_T0003015.1 MGP_C57BL6NJ_G0002835.1 mouse_genomes_project 1 112851720 112868760 + D630008O14Rik antisense antisense MGP_C57BL6NJ_T0019415.1 MGP_C57BL6NJ_G0016242.1 mouse_genomes_project 1 13906193 13942671 - MGP_C57BL6NJ_P0019415 Sbspon protein_coding protein_coding MGP_C57BL6NJ_T0011517.1 MGP_C57BL6NJ_G0009602.1 mouse_genomes_project 1 184489075 184489402 - Gm22383 misc_RNA misc_RNA MGP_C57BL6NJ_T0012252.1 MGP_C57BL6NJ_G0010297.1 mouse_genomes_project 1 34684352 34684707 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099662.1 MGP_C57BL6NJ_G0037708.1 mouse_genomes_project 1 205171371 205171475 - Gm22446 snRNA snRNA MGP_C57BL6NJ_T0002909.1 MGP_C57BL6NJ_G0002755.1 mouse_genomes_project 1 15914976 15970351 - Gm16070 antisense antisense MGP_C57BL6NJ_T0002910.1 MGP_C57BL6NJ_G0002755.1 mouse_genomes_project 1 15929604 15970713 - Gm16070 antisense antisense MGP_C57BL6NJ_T0002911.1 MGP_C57BL6NJ_G0002755.1 mouse_genomes_project 1 15968050 15970322 - Gm16070 antisense antisense MGP_C57BL6NJ_T0024232.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189650407 189654288 + MGP_C57BL6NJ_P0024232 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024233.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189650415 189654337 + MGP_C57BL6NJ_P0024233 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024234.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189651486 189657498 + MGP_C57BL6NJ_P0024234 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024235.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189651840 189654980 + MGP_C57BL6NJ_P0024235 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024236.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189651844 189657498 + MGP_C57BL6NJ_P0024236 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024237.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189651852 189654778 + MGP_C57BL6NJ_P0024237 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024238.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189651928 189654710 + MGP_C57BL6NJ_P0024238 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024239.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189652129 189657494 + MGP_C57BL6NJ_P0024239 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0024240.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189652822 189653697 + Zbtb18 protein_coding processed_transcript MGP_C57BL6NJ_T0024241.1 MGP_C57BL6NJ_G0017249.1 mouse_genomes_project 1 189653012 189657498 + MGP_C57BL6NJ_P0024241 Zbtb18 protein_coding protein_coding MGP_C57BL6NJ_T0012633.1 MGP_C57BL6NJ_G0010678.1 mouse_genomes_project 1 183395700 183396235 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098938.1 MGP_C57BL6NJ_G0037002.1 mouse_genomes_project 1 159814607 159814739 + n-R5s219 rRNA rRNA MGP_C57BL6NJ_T0019722.1 MGP_C57BL6NJ_G0016310.1 mouse_genomes_project 1 36359114 36367953 - MGP_C57BL6NJ_P0019722 Neurl3 protein_coding protein_coding MGP_C57BL6NJ_T0019723.1 MGP_C57BL6NJ_G0016310.1 mouse_genomes_project 1 36363378 36368927 - MGP_C57BL6NJ_P0019723 Neurl3 protein_coding protein_coding MGP_C57BL6NJ_T0021419.1 MGP_C57BL6NJ_G0016623.1 mouse_genomes_project 1 89358943 89666247 - protein_coding retained_intron MGP_C57BL6NJ_T0011522.1 MGP_C57BL6NJ_G0009607.1 mouse_genomes_project 1 206440018 206440307 - Gm23583 misc_RNA misc_RNA MGP_C57BL6NJ_T0022583.1 MGP_C57BL6NJ_G0016887.1 mouse_genomes_project 1 141911988 141934567 + MGP_C57BL6NJ_P0022583 protein_coding protein_coding MGP_C57BL6NJ_T0022584.1 MGP_C57BL6NJ_G0016887.1 mouse_genomes_project 1 141911988 141934601 + MGP_C57BL6NJ_P0022584 protein_coding protein_coding MGP_C57BL6NJ_T0022589.1 MGP_C57BL6NJ_G0016887.1 mouse_genomes_project 1 141928844 141934601 + MGP_C57BL6NJ_P0022589 protein_coding protein_coding MGP_C57BL6NJ_T0000821.1 MGP_C57BL6NJ_G0000735.1 mouse_genomes_project 1 166441808 166442997 + TEC TEC MGP_C57BL6NJ_T0006075.1 MGP_C57BL6NJ_G0005092.1 mouse_genomes_project 1 145456139 145458575 - 4933409D19Rik lincRNA lincRNA MGP_C57BL6NJ_T0100930.1 MGP_C57BL6NJ_G0038976.1 mouse_genomes_project 1 171935894 171935970 + Gm25789 snoRNA snoRNA MGP_C57BL6NJ_T0100937.1 MGP_C57BL6NJ_G0038983.1 mouse_genomes_project 1 198094466 198094598 + Snora36b snoRNA snoRNA MGP_C57BL6NJ_T0022206.1 MGP_C57BL6NJ_G0016804.1 mouse_genomes_project 1 127372665 127449892 - MGP_C57BL6NJ_P0022206 Cfap221 protein_coding protein_coding MGP_C57BL6NJ_T0022207.1 MGP_C57BL6NJ_G0016804.1 mouse_genomes_project 1 127372843 127447912 - MGP_C57BL6NJ_P0022207 Cfap221 protein_coding protein_coding MGP_C57BL6NJ_T0022208.1 MGP_C57BL6NJ_G0016804.1 mouse_genomes_project 1 127414567 127449936 - MGP_C57BL6NJ_P0022208 Cfap221 protein_coding protein_coding MGP_C57BL6NJ_T0020475.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61373876 61402264 - MGP_C57BL6NJ_P0020475 Tmem237 protein_coding protein_coding MGP_C57BL6NJ_T0020476.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61373883 61401976 - MGP_C57BL6NJ_P0020476 Tmem237 protein_coding protein_coding MGP_C57BL6NJ_T0020477.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61374197 61402552 - MGP_C57BL6NJ_P0020477 Tmem237 protein_coding protein_coding MGP_C57BL6NJ_T0020478.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61388987 61402282 - MGP_C57BL6NJ_P0020478 Tmem237 protein_coding protein_coding MGP_C57BL6NJ_T0020479.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61389576 61396489 - Tmem237 protein_coding retained_intron MGP_C57BL6NJ_T0020480.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61389882 61402578 - MGP_C57BL6NJ_P0020480 Tmem237 protein_coding protein_coding MGP_C57BL6NJ_T0020481.1 MGP_C57BL6NJ_G0016453.1 mouse_genomes_project 1 61390663 61398131 - Tmem237 protein_coding retained_intron MGP_C57BL6NJ_T0024099.1 MGP_C57BL6NJ_G0017208.1 mouse_genomes_project 1 185236815 185274946 - MGP_C57BL6NJ_P0024099 Cadm3 protein_coding protein_coding MGP_C57BL6NJ_T0024100.1 MGP_C57BL6NJ_G0017208.1 mouse_genomes_project 1 185239544 185274936 - MGP_C57BL6NJ_P0024100 Cadm3 protein_coding protein_coding MGP_C57BL6NJ_T0024101.1 MGP_C57BL6NJ_G0017208.1 mouse_genomes_project 1 185240394 185245350 - Cadm3 protein_coding retained_intron MGP_C57BL6NJ_T0024102.1 MGP_C57BL6NJ_G0017208.1 mouse_genomes_project 1 185249776 185274899 - Cadm3 protein_coding retained_intron MGP_C57BL6NJ_T0024103.1 MGP_C57BL6NJ_G0017208.1 mouse_genomes_project 1 185252150 185274884 - Cadm3 protein_coding retained_intron MGP_C57BL6NJ_T0006102.1 MGP_C57BL6NJ_G0005113.1 mouse_genomes_project 1 164294244 164296309 + Gm29290 lincRNA lincRNA MGP_C57BL6NJ_T0021376.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87484470 87658814 - MGP_C57BL6NJ_P0021376 Sphkap protein_coding protein_coding MGP_C57BL6NJ_T0021377.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87485769 87658621 - MGP_C57BL6NJ_P0021377 Sphkap protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021378.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87485773 87509570 - MGP_C57BL6NJ_P0021378 Sphkap protein_coding protein_coding MGP_C57BL6NJ_T0021379.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87495557 87658779 - Sphkap protein_coding retained_intron MGP_C57BL6NJ_T0021380.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87569949 87658753 - Sphkap protein_coding retained_intron MGP_C57BL6NJ_T0021381.1 MGP_C57BL6NJ_G0016616.1 mouse_genomes_project 1 87628475 87658779 - Sphkap protein_coding retained_intron MGP_C57BL6NJ_T0019562.1 MGP_C57BL6NJ_G0016280.1 mouse_genomes_project 1 23002069 23082213 + MGP_C57BL6NJ_P0019562 Col9a1 protein_coding protein_coding MGP_C57BL6NJ_T0019563.1 MGP_C57BL6NJ_G0016280.1 mouse_genomes_project 1 23022490 23082213 + MGP_C57BL6NJ_P0019563 Col9a1 protein_coding protein_coding MGP_C57BL6NJ_T0019564.1 MGP_C57BL6NJ_G0016280.1 mouse_genomes_project 1 23024320 23050641 + Col9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0019565.1 MGP_C57BL6NJ_G0016280.1 mouse_genomes_project 1 23059372 23060811 + Col9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020588.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62913845 63005985 - MGP_C57BL6NJ_P0020588 Raph1 protein_coding protein_coding MGP_C57BL6NJ_T0020589.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62914738 62933094 - MGP_C57BL6NJ_P0020589 Raph1 protein_coding protein_coding MGP_C57BL6NJ_T0020590.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62914789 63005971 - MGP_C57BL6NJ_P0020590 Raph1 protein_coding protein_coding MGP_C57BL6NJ_T0020591.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62924219 63005975 - MGP_C57BL6NJ_P0020591 Raph1 protein_coding protein_coding MGP_C57BL6NJ_T0020592.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62926866 62929825 - Raph1 protein_coding retained_intron MGP_C57BL6NJ_T0020593.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62935146 62936809 - Raph1 protein_coding retained_intron MGP_C57BL6NJ_T0020594.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62948198 62956662 - Raph1 protein_coding retained_intron MGP_C57BL6NJ_T0020595.1 MGP_C57BL6NJ_G0016469.1 mouse_genomes_project 1 62961737 63006259 - MGP_C57BL6NJ_P0020595 Raph1 protein_coding protein_coding MGP_C57BL6NJ_T0023874.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182943674 182945263 + MGP_C57BL6NJ_P0023874 B4galt3 protein_coding protein_coding MGP_C57BL6NJ_T0023875.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182943685 182945364 + B4galt3 protein_coding retained_intron MGP_C57BL6NJ_T0023876.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182943705 182950280 + B4galt3 protein_coding retained_intron MGP_C57BL6NJ_T0023877.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182943732 182950287 + MGP_C57BL6NJ_P0023877 B4galt3 protein_coding protein_coding MGP_C57BL6NJ_T0023878.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182943739 182944692 + B4galt3 protein_coding processed_transcript MGP_C57BL6NJ_T0023879.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182944149 182944966 + B4galt3 protein_coding retained_intron MGP_C57BL6NJ_T0023880.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182944963 182945928 + MGP_C57BL6NJ_P0023880 B4galt3 protein_coding protein_coding MGP_C57BL6NJ_T0023881.1 MGP_C57BL6NJ_G0017153.1 mouse_genomes_project 1 182946895 182950278 + B4galt3 protein_coding retained_intron MGP_C57BL6NJ_T0020482.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403104 61444235 - MGP_C57BL6NJ_P0020482 Mpp4 protein_coding protein_coding MGP_C57BL6NJ_T0020483.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403104 61448956 - MGP_C57BL6NJ_P0020483 Mpp4 protein_coding protein_coding MGP_C57BL6NJ_T0020484.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403104 61447203 - MGP_C57BL6NJ_P0020484 Mpp4 protein_coding protein_coding MGP_C57BL6NJ_T0020485.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403105 61447203 - MGP_C57BL6NJ_P0020485 Mpp4 protein_coding protein_coding MGP_C57BL6NJ_T0020486.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403109 61429692 - Mpp4 protein_coding processed_transcript MGP_C57BL6NJ_T0020487.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403313 61444228 - MGP_C57BL6NJ_P0020487 Mpp4 protein_coding protein_coding MGP_C57BL6NJ_T0020488.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403422 61447134 - Mpp4 protein_coding retained_intron MGP_C57BL6NJ_T0020489.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61403422 61444228 - MGP_C57BL6NJ_P0020489 Mpp4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020490.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61421804 61437271 - Mpp4 protein_coding retained_intron MGP_C57BL6NJ_T0020491.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61421806 61435558 - Mpp4 protein_coding retained_intron MGP_C57BL6NJ_T0020492.1 MGP_C57BL6NJ_G0016454.1 mouse_genomes_project 1 61433049 61447139 - Mpp4 protein_coding retained_intron MGP_C57BL6NJ_T0100884.1 MGP_C57BL6NJ_G0038930.1 mouse_genomes_project 1 88207088 88207212 + Gm24555 snoRNA snoRNA MGP_C57BL6NJ_T0000550.1 MGP_C57BL6NJ_G0000467.1 mouse_genomes_project 1 24781412 24785068 - TEC TEC MGP_C57BL6NJ_T0012664.1 MGP_C57BL6NJ_G0010709.1 mouse_genomes_project 1 203040541 203040803 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021264.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82287886 82307353 + MGP_C57BL6NJ_P0021264 Mogat1 protein_coding protein_coding MGP_C57BL6NJ_T0021265.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82288055 82308893 + MGP_C57BL6NJ_P0021265 Mogat1 protein_coding protein_coding MGP_C57BL6NJ_T0021266.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82288064 82319226 + MGP_C57BL6NJ_P0021266 Mogat1 protein_coding protein_coding MGP_C57BL6NJ_T0021267.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82288707 82302466 + MGP_C57BL6NJ_P0021267 Mogat1 protein_coding protein_coding MGP_C57BL6NJ_T0021268.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82288762 82319228 + MGP_C57BL6NJ_P0021268 Mogat1 protein_coding protein_coding MGP_C57BL6NJ_T0021269.1 MGP_C57BL6NJ_G0016591.1 mouse_genomes_project 1 82318682 82319228 + Mogat1 protein_coding processed_transcript MGP_C57BL6NJ_T0022736.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144042596 144067578 - MGP_C57BL6NJ_P0022736 Rnpep protein_coding protein_coding MGP_C57BL6NJ_T0022737.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144042596 144067578 - MGP_C57BL6NJ_P0022737 Rnpep protein_coding protein_coding MGP_C57BL6NJ_T0022738.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144045078 144047287 - Rnpep protein_coding retained_intron MGP_C57BL6NJ_T0022739.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144046915 144055233 - Rnpep protein_coding processed_transcript MGP_C57BL6NJ_T0022740.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144055144 144058302 - Rnpep protein_coding processed_transcript MGP_C57BL6NJ_T0022741.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144055146 144056528 - Rnpep protein_coding retained_intron MGP_C57BL6NJ_T0022742.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144059425 144060912 - Rnpep protein_coding retained_intron MGP_C57BL6NJ_T0022743.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144060842 144062606 - Rnpep protein_coding retained_intron MGP_C57BL6NJ_T0022744.1 MGP_C57BL6NJ_G0016924.1 mouse_genomes_project 1 144061134 144063409 - Rnpep protein_coding retained_intron MGP_C57BL6NJ_T0019341.1 MGP_C57BL6NJ_G0016227.1 mouse_genomes_project 1 7949132 8375250 - MGP_C57BL6NJ_P0019341 Cpa6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019342.1 MGP_C57BL6NJ_G0016227.1 mouse_genomes_project 1 7949139 8375250 - MGP_C57BL6NJ_P0019342 Cpa6 protein_coding protein_coding MGP_C57BL6NJ_T0019343.1 MGP_C57BL6NJ_G0016227.1 mouse_genomes_project 1 8089394 8098817 - Cpa6 protein_coding retained_intron MGP_C57BL6NJ_T0019344.1 MGP_C57BL6NJ_G0016227.1 mouse_genomes_project 1 8219331 8375210 - Cpa6 protein_coding processed_transcript MGP_C57BL6NJ_T0012141.1 MGP_C57BL6NJ_G0010186.1 mouse_genomes_project 1 4255394 4256057 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012156.1 MGP_C57BL6NJ_G0010201.1 mouse_genomes_project 1 5942088 5942488 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000583.1 MGP_C57BL6NJ_G0000499.1 mouse_genomes_project 1 39054078 39054581 + TEC TEC MGP_C57BL6NJ_T0100867.1 MGP_C57BL6NJ_G0038913.1 mouse_genomes_project 1 53616123 53616245 - Gm27607 snoRNA snoRNA MGP_C57BL6NJ_T0012190.1 MGP_C57BL6NJ_G0010235.1 mouse_genomes_project 1 16206601 16208000 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019503.1 MGP_C57BL6NJ_G0016264.1 mouse_genomes_project 1 19389254 19437153 + MGP_C57BL6NJ_P0019503 Paqr8 protein_coding protein_coding MGP_C57BL6NJ_T0019504.1 MGP_C57BL6NJ_G0016264.1 mouse_genomes_project 1 19416285 19436558 + MGP_C57BL6NJ_P0019504 Paqr8 protein_coding protein_coding MGP_C57BL6NJ_T0019505.1 MGP_C57BL6NJ_G0016264.1 mouse_genomes_project 1 19416319 19433252 + MGP_C57BL6NJ_P0019505 Paqr8 protein_coding protein_coding MGP_C57BL6NJ_T0019506.1 MGP_C57BL6NJ_G0016264.1 mouse_genomes_project 1 19420293 19433259 + MGP_C57BL6NJ_P0019506 Paqr8 protein_coding protein_coding MGP_C57BL6NJ_T0000827.1 MGP_C57BL6NJ_G0000741.1 mouse_genomes_project 1 167394058 167396701 - TEC TEC MGP_C57BL6NJ_T0020950.1 MGP_C57BL6NJ_G0016541.1 mouse_genomes_project 1 77905329 77911218 + Ctdsp1 protein_coding retained_intron MGP_C57BL6NJ_T0020951.1 MGP_C57BL6NJ_G0016541.1 mouse_genomes_project 1 77905405 77910969 + MGP_C57BL6NJ_P0020951 Ctdsp1 protein_coding protein_coding MGP_C57BL6NJ_T0020952.1 MGP_C57BL6NJ_G0016541.1 mouse_genomes_project 1 77905696 77907604 + MGP_C57BL6NJ_P0020952 Ctdsp1 protein_coding protein_coding MGP_C57BL6NJ_T0005860.1 MGP_C57BL6NJ_G0004927.1 mouse_genomes_project 1 42894540 42894939 + lincRNA lincRNA MGP_C57BL6NJ_T0099573.1 MGP_C57BL6NJ_G0037619.1 mouse_genomes_project 1 8179677 8179784 - Gm25253 snRNA snRNA MGP_C57BL6NJ_T0012627.1 MGP_C57BL6NJ_G0010672.1 mouse_genomes_project 1 181055755 181056339 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023504.1 MGP_C57BL6NJ_G0017065.1 mouse_genomes_project 1 173649667 173659280 - 7420461P10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0023505.1 MGP_C57BL6NJ_G0017065.1 mouse_genomes_project 1 173649667 173660545 - MGP_C57BL6NJ_P0023505 7420461P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0023506.1 MGP_C57BL6NJ_G0017065.1 mouse_genomes_project 1 173649677 173660658 - MGP_C57BL6NJ_P0023506 7420461P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0023382.1 MGP_C57BL6NJ_G0017044.1 mouse_genomes_project 1 170999715 171004321 + MGP_C57BL6NJ_P0023382 Mrps14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023383.1 MGP_C57BL6NJ_G0017044.1 mouse_genomes_project 1 170999715 171006671 + MGP_C57BL6NJ_P0023383 Mrps14 protein_coding protein_coding MGP_C57BL6NJ_T0023384.1 MGP_C57BL6NJ_G0017044.1 mouse_genomes_project 1 170999803 171004313 + MGP_C57BL6NJ_P0023384 Mrps14 protein_coding protein_coding MGP_C57BL6NJ_T0012209.1 MGP_C57BL6NJ_G0010254.1 mouse_genomes_project 1 22090212 22090856 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006203.1 MGP_C57BL6NJ_G0005189.1 mouse_genomes_project 1 199459548 199510667 - A730004F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0006204.1 MGP_C57BL6NJ_G0005189.1 mouse_genomes_project 1 199459592 199510876 - A730004F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0099638.1 MGP_C57BL6NJ_G0037684.1 mouse_genomes_project 1 159679100 159679206 - Gm23535 snRNA snRNA MGP_C57BL6NJ_T0012463.1 MGP_C57BL6NJ_G0010508.1 mouse_genomes_project 1 110539120 110539427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102657.1 MGP_C57BL6NJ_G0040452.1 mouse_genomes_project 1 92916125 92916969 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0020710.1 MGP_C57BL6NJ_G0016494.1 mouse_genomes_project 1 67792634 67794799 - MGP_C57BL6NJ_P0020710 Crygc protein_coding protein_coding MGP_C57BL6NJ_T0020711.1 MGP_C57BL6NJ_G0016494.1 mouse_genomes_project 1 67792640 67794631 - MGP_C57BL6NJ_P0020711 Crygc protein_coding protein_coding MGP_C57BL6NJ_T0005891.1 MGP_C57BL6NJ_G0004944.1 mouse_genomes_project 1 54228504 54291587 + Gm553 lincRNA lincRNA MGP_C57BL6NJ_T0022426.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139684684 139697104 - Ikbke protein_coding retained_intron MGP_C57BL6NJ_T0022427.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139684938 139713193 - MGP_C57BL6NJ_P0022427 Ikbke protein_coding protein_coding MGP_C57BL6NJ_T0022428.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139684943 139710538 - MGP_C57BL6NJ_P0022428 Ikbke protein_coding protein_coding MGP_C57BL6NJ_T0022429.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139689361 139698261 - Ikbke protein_coding retained_intron MGP_C57BL6NJ_T0022430.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139693680 139702517 - Ikbke protein_coding retained_intron MGP_C57BL6NJ_T0022431.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139702873 139704514 - Ikbke protein_coding retained_intron MGP_C57BL6NJ_T0022432.1 MGP_C57BL6NJ_G0016856.1 mouse_genomes_project 1 139705763 139710300 - MGP_C57BL6NJ_P0022432 Ikbke protein_coding protein_coding MGP_C57BL6NJ_T0012167.1 MGP_C57BL6NJ_G0010212.1 mouse_genomes_project 1 7111847 7112888 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006062.1 MGP_C57BL6NJ_G0005079.1 mouse_genomes_project 1 140708032 140710788 - 1700037F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0002975.1 MGP_C57BL6NJ_G0002805.1 mouse_genomes_project 1 76380481 76422401 + 1700027A15Rik antisense antisense MGP_C57BL6NJ_T0002976.1 MGP_C57BL6NJ_G0002805.1 mouse_genomes_project 1 76411813 76423184 + 1700027A15Rik antisense antisense MGP_C57BL6NJ_T0002977.1 MGP_C57BL6NJ_G0002805.1 mouse_genomes_project 1 76412158 76423175 + 1700027A15Rik antisense antisense MGP_C57BL6NJ_T0002978.1 MGP_C57BL6NJ_G0002805.1 mouse_genomes_project 1 76420230 76423176 + 1700027A15Rik antisense antisense MGP_C57BL6NJ_T0002979.1 MGP_C57BL6NJ_G0002805.1 mouse_genomes_project 1 76422245 76423184 + 1700027A15Rik antisense antisense MGP_C57BL6NJ_T0012541.1 MGP_C57BL6NJ_G0010586.1 mouse_genomes_project 1 142694397 142695335 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023825.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182772517 182786733 + MGP_C57BL6NJ_P0023825 Cfap126 protein_coding protein_coding MGP_C57BL6NJ_T0023826.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182772588 182786683 + MGP_C57BL6NJ_P0023826 Cfap126 protein_coding protein_coding MGP_C57BL6NJ_T0023827.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182781644 182786871 + MGP_C57BL6NJ_P0023827 Cfap126 protein_coding protein_coding MGP_C57BL6NJ_T0023828.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182781647 182783140 + Cfap126 protein_coding processed_transcript MGP_C57BL6NJ_T0023829.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182782660 182785944 + MGP_C57BL6NJ_P0023829 Cfap126 protein_coding protein_coding MGP_C57BL6NJ_T0023830.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182783133 182786846 + MGP_C57BL6NJ_P0023830 Cfap126 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023831.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182783157 182785988 + MGP_C57BL6NJ_P0023831 Cfap126 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023832.1 MGP_C57BL6NJ_G0017143.1 mouse_genomes_project 1 182784977 182786563 + MGP_C57BL6NJ_P0023832 Cfap126 protein_coding protein_coding MGP_C57BL6NJ_T0012613.1 MGP_C57BL6NJ_G0010658.1 mouse_genomes_project 1 175145506 175145895 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021327.1 MGP_C57BL6NJ_G0016606.1 mouse_genomes_project 1 86429153 86563207 + MGP_C57BL6NJ_P0021327 Rhbdd1 protein_coding protein_coding MGP_C57BL6NJ_T0021328.1 MGP_C57BL6NJ_G0016606.1 mouse_genomes_project 1 86429343 86432432 + Rhbdd1 protein_coding retained_intron MGP_C57BL6NJ_T0021329.1 MGP_C57BL6NJ_G0016606.1 mouse_genomes_project 1 86451721 86563207 + MGP_C57BL6NJ_P0021329 Rhbdd1 protein_coding protein_coding MGP_C57BL6NJ_T0000815.1 MGP_C57BL6NJ_G0000729.1 mouse_genomes_project 1 163547272 163550613 - TEC TEC MGP_C57BL6NJ_T0022433.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139720313 139980907 - MGP_C57BL6NJ_P0022433 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022434.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139724420 139735513 - MGP_C57BL6NJ_P0022434 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022435.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139730047 139767779 - Srgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0022436.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139730277 139980907 - MGP_C57BL6NJ_P0022436 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022437.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139730278 139744195 - Srgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0022438.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139730280 139779273 - MGP_C57BL6NJ_P0022438 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022439.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139730815 139731440 - Srgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0022440.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139731700 139798749 - MGP_C57BL6NJ_P0022440 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022441.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139753832 139766972 - Srgap2 protein_coding retained_intron MGP_C57BL6NJ_T0022442.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139796710 139980912 - Srgap2 protein_coding retained_intron MGP_C57BL6NJ_T0022443.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139847484 139967510 - MGP_C57BL6NJ_P0022443 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0022444.1 MGP_C57BL6NJ_G0016857.1 mouse_genomes_project 1 139873290 139956878 - MGP_C57BL6NJ_P0022444 Srgap2 protein_coding protein_coding MGP_C57BL6NJ_T0020903.1 MGP_C57BL6NJ_G0016531.1 mouse_genomes_project 1 77612994 77638551 + MGP_C57BL6NJ_P0020903 Rufy4 protein_coding protein_coding MGP_C57BL6NJ_T0022411.1 MGP_C57BL6NJ_G0016852.1 mouse_genomes_project 1 139465326 139510336 - MGP_C57BL6NJ_P0022411 Mapkapk2 protein_coding protein_coding MGP_C57BL6NJ_T0022412.1 MGP_C57BL6NJ_G0016852.1 mouse_genomes_project 1 139468515 139484721 - MGP_C57BL6NJ_P0022412 Mapkapk2 protein_coding protein_coding MGP_C57BL6NJ_T0012296.1 MGP_C57BL6NJ_G0010341.1 mouse_genomes_project 1 49605601 49606587 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021356.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988269 87065584 + MGP_C57BL6NJ_P0021356 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021357.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988283 87060783 + MGP_C57BL6NJ_P0021357 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021358.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988455 87060783 + MGP_C57BL6NJ_P0021358 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021359.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988457 87060681 + MGP_C57BL6NJ_P0021359 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021360.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988460 87059923 + MGP_C57BL6NJ_P0021360 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021361.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988460 87060077 + MGP_C57BL6NJ_P0021361 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021362.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988520 87059524 + MGP_C57BL6NJ_P0021362 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0021363.1 MGP_C57BL6NJ_G0016611.1 mouse_genomes_project 1 86988859 87043212 + MGP_C57BL6NJ_P0021363 Agfg1 protein_coding protein_coding MGP_C57BL6NJ_T0000684.1 MGP_C57BL6NJ_G0000600.1 mouse_genomes_project 1 91544963 91546525 + TEC TEC MGP_C57BL6NJ_T0023339.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169034266 169393181 + MGP_C57BL6NJ_P0023339 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023340.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169034297 169393183 + MGP_C57BL6NJ_P0023340 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023341.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169034333 169311921 + MGP_C57BL6NJ_P0023341 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023342.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169035920 169307427 + MGP_C57BL6NJ_P0023342 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023343.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169035933 169380934 + MGP_C57BL6NJ_P0023343 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023344.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169196526 169207554 + Astn1 protein_coding processed_transcript MGP_C57BL6NJ_T0023345.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169241001 169286765 + MGP_C57BL6NJ_P0023345 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023346.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169286515 169306597 + Astn1 protein_coding retained_intron MGP_C57BL6NJ_T0023347.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169355799 169369001 + MGP_C57BL6NJ_P0023347 Astn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023348.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169355947 169385662 + MGP_C57BL6NJ_P0023348 Astn1 protein_coding protein_coding MGP_C57BL6NJ_T0023349.1 MGP_C57BL6NJ_G0017038.1 mouse_genomes_project 1 169380235 169389934 + Astn1 protein_coding processed_transcript MGP_C57BL6NJ_T0003148.1 MGP_C57BL6NJ_G0002936.1 mouse_genomes_project 1 205538802 205560586 + antisense antisense MGP_C57BL6NJ_T0003149.1 MGP_C57BL6NJ_G0002936.1 mouse_genomes_project 1 205539251 205552922 + antisense antisense MGP_C57BL6NJ_T0024392.1 MGP_C57BL6NJ_G0017282.1 mouse_genomes_project 1 193672330 193733224 - MGP_C57BL6NJ_P0024392 Nvl protein_coding protein_coding MGP_C57BL6NJ_T0024393.1 MGP_C57BL6NJ_G0017282.1 mouse_genomes_project 1 193677117 193679234 - Nvl protein_coding processed_transcript MGP_C57BL6NJ_T0024394.1 MGP_C57BL6NJ_G0017282.1 mouse_genomes_project 1 193678724 193680991 - Nvl protein_coding retained_intron MGP_C57BL6NJ_T0024395.1 MGP_C57BL6NJ_G0017282.1 mouse_genomes_project 1 193681447 193690656 - Nvl protein_coding retained_intron MGP_C57BL6NJ_T0020304.1 MGP_C57BL6NJ_G0016420.1 mouse_genomes_project 1 57031010 57050919 + MGP_C57BL6NJ_P0020304 Coq10b protein_coding protein_coding MGP_C57BL6NJ_T0020305.1 MGP_C57BL6NJ_G0016420.1 mouse_genomes_project 1 57031010 57050170 + MGP_C57BL6NJ_P0020305 Coq10b protein_coding protein_coding MGP_C57BL6NJ_T0020306.1 MGP_C57BL6NJ_G0016420.1 mouse_genomes_project 1 57031109 57032334 + Coq10b protein_coding retained_intron MGP_C57BL6NJ_T0020307.1 MGP_C57BL6NJ_G0016420.1 mouse_genomes_project 1 57037855 57039974 + Coq10b protein_coding retained_intron MGP_C57BL6NJ_T0012494.1 MGP_C57BL6NJ_G0010539.1 mouse_genomes_project 1 119193314 119193983 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006044.1 MGP_C57BL6NJ_G0005065.1 mouse_genomes_project 1 128322763 128344937 + Gm29345 lincRNA lincRNA MGP_C57BL6NJ_T0023717.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317599 178416481 + MGP_C57BL6NJ_P0023717 Fam78b protein_coding protein_coding MGP_C57BL6NJ_T0023718.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317599 178416481 + MGP_C57BL6NJ_P0023718 Fam78b protein_coding protein_coding MGP_C57BL6NJ_T0023719.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317614 178414256 + MGP_C57BL6NJ_P0023719 Fam78b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023720.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317648 178406299 + MGP_C57BL6NJ_P0023720 Fam78b protein_coding protein_coding MGP_C57BL6NJ_T0023721.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317762 178413903 + MGP_C57BL6NJ_P0023721 Fam78b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023722.1 MGP_C57BL6NJ_G0017112.1 mouse_genomes_project 1 178317771 178416188 + MGP_C57BL6NJ_P0023722 Fam78b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099576.1 MGP_C57BL6NJ_G0037622.1 mouse_genomes_project 1 18899944 18900046 - Gm24162 snRNA snRNA MGP_C57BL6NJ_T0009729.1 MGP_C57BL6NJ_G0007814.1 mouse_genomes_project 1 161570673 161570731 + Mir7682 miRNA miRNA MGP_C57BL6NJ_T0003046.1 MGP_C57BL6NJ_G0002858.1 mouse_genomes_project 1 144945701 144948947 - Gm37759 antisense antisense MGP_C57BL6NJ_T0022125.1 MGP_C57BL6NJ_G0016789.1 mouse_genomes_project 1 124876421 125492388 + MGP_C57BL6NJ_P0022125 protein_coding protein_coding MGP_C57BL6NJ_T0012174.1 MGP_C57BL6NJ_G0010219.1 mouse_genomes_project 1 9319658 9319920 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006162.1 MGP_C57BL6NJ_G0005161.1 mouse_genomes_project 1 192641102 192651109 - Gm37336 lincRNA lincRNA MGP_C57BL6NJ_T0006163.1 MGP_C57BL6NJ_G0005161.1 mouse_genomes_project 1 192650706 192651174 - Gm37336 lincRNA lincRNA MGP_C57BL6NJ_T0022522.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140939057 140991377 + MGP_C57BL6NJ_P0022522 Dstyk protein_coding protein_coding MGP_C57BL6NJ_T0022523.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140939106 140988516 + MGP_C57BL6NJ_P0022523 Dstyk protein_coding protein_coding MGP_C57BL6NJ_T0022524.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140939879 140955448 + Dstyk protein_coding processed_transcript MGP_C57BL6NJ_T0022525.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140972354 140974564 + MGP_C57BL6NJ_P0022525 Dstyk protein_coding protein_coding MGP_C57BL6NJ_T0022526.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140977531 140980596 + Dstyk protein_coding retained_intron MGP_C57BL6NJ_T0022527.1 MGP_C57BL6NJ_G0016876.1 mouse_genomes_project 1 140986832 140987780 + Dstyk protein_coding retained_intron MGP_C57BL6NJ_T0006105.1 MGP_C57BL6NJ_G0005115.1 mouse_genomes_project 1 164393218 164400157 - Gm28286 lincRNA lincRNA MGP_C57BL6NJ_T0023694.1 MGP_C57BL6NJ_G0017105.1 mouse_genomes_project 1 177475000 177514431 - MGP_C57BL6NJ_P0023694 Mael protein_coding protein_coding MGP_C57BL6NJ_T0023695.1 MGP_C57BL6NJ_G0017105.1 mouse_genomes_project 1 177475184 177514428 - MGP_C57BL6NJ_P0023695 Mael protein_coding protein_coding MGP_C57BL6NJ_T0006057.1 MGP_C57BL6NJ_G0005075.1 mouse_genomes_project 1 134937540 134943977 - 4930599A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006058.1 MGP_C57BL6NJ_G0005075.1 mouse_genomes_project 1 134940060 134944003 - 4930599A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0003135.1 MGP_C57BL6NJ_G0002929.1 mouse_genomes_project 1 203415165 203468083 + Prox1os antisense antisense MGP_C57BL6NJ_T0000529.1 MGP_C57BL6NJ_G0000448.1 mouse_genomes_project 1 20483237 20487507 - TEC TEC MGP_C57BL6NJ_T0019711.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36224099 36333851 - MGP_C57BL6NJ_P0019711 Uggt1 protein_coding protein_coding MGP_C57BL6NJ_T0019712.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36227554 36249884 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019713.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36227558 36333707 - MGP_C57BL6NJ_P0019713 Uggt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019714.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36230229 36234597 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019715.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36245819 36257436 - MGP_C57BL6NJ_P0019715 Uggt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019716.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36246298 36269319 - MGP_C57BL6NJ_P0019716 Uggt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019717.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36247451 36249032 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019718.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36265347 36333653 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019719.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36272571 36298777 - MGP_C57BL6NJ_P0019719 Uggt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019720.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36282659 36296951 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019721.1 MGP_C57BL6NJ_G0016309.1 mouse_genomes_project 1 36333184 36334266 - Uggt1 protein_coding retained_intron MGP_C57BL6NJ_T0019480.1 MGP_C57BL6NJ_G0016256.1 mouse_genomes_project 1 16514066 16515037 - MGP_C57BL6NJ_P0019480 Defb18 protein_coding protein_coding MGP_C57BL6NJ_T0012235.1 MGP_C57BL6NJ_G0010280.1 mouse_genomes_project 1 32905174 32905925 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024371.1 MGP_C57BL6NJ_G0017276.1 mouse_genomes_project 1 193384502 193440197 + MGP_C57BL6NJ_P0024371 Lefty2 protein_coding protein_coding MGP_C57BL6NJ_T0024374.1 MGP_C57BL6NJ_G0017276.1 mouse_genomes_project 1 193435221 193438581 + Lefty2 protein_coding retained_intron MGP_C57BL6NJ_T0012322.1 MGP_C57BL6NJ_G0010367.1 mouse_genomes_project 1 57153933 57154977 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011509.1 MGP_C57BL6NJ_G0009594.1 mouse_genomes_project 1 90298363 90298629 + Gm22906 misc_RNA misc_RNA MGP_C57BL6NJ_T0006217.1 MGP_C57BL6NJ_G0005200.1 mouse_genomes_project 1 204615940 204637885 + Gm37168 lincRNA lincRNA MGP_C57BL6NJ_T0023782.1 MGP_C57BL6NJ_G0017129.1 mouse_genomes_project 1 181752588 181775952 + MGP_C57BL6NJ_P0023782 Sh2d1b2 protein_coding protein_coding MGP_C57BL6NJ_T0023783.1 MGP_C57BL6NJ_G0017129.1 mouse_genomes_project 1 181752616 181773903 + MGP_C57BL6NJ_P0023783 Sh2d1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012437.1 MGP_C57BL6NJ_G0010482.1 mouse_genomes_project 1 96587236 96589353 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020791.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69865626 69907844 - MGP_C57BL6NJ_P0020791 Lancl1 protein_coding protein_coding MGP_C57BL6NJ_T0020792.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69865626 69907837 - MGP_C57BL6NJ_P0020792 Lancl1 protein_coding protein_coding MGP_C57BL6NJ_T0020793.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69868484 69907806 - MGP_C57BL6NJ_P0020793 Lancl1 protein_coding protein_coding MGP_C57BL6NJ_T0020794.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69872127 69887425 - Lancl1 protein_coding processed_transcript MGP_C57BL6NJ_T0020795.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69875042 69907806 - MGP_C57BL6NJ_P0020795 Lancl1 protein_coding protein_coding MGP_C57BL6NJ_T0020796.1 MGP_C57BL6NJ_G0016509.1 mouse_genomes_project 1 69885968 69888578 - Lancl1 protein_coding retained_intron MGP_C57BL6NJ_T0021556.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92001999 92032547 + Gigyf2 protein_coding processed_transcript MGP_C57BL6NJ_T0021557.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002004 92131124 + MGP_C57BL6NJ_P0021557 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021558.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002030 92129473 + MGP_C57BL6NJ_P0021558 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021559.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002031 92034609 + Gigyf2 protein_coding processed_transcript MGP_C57BL6NJ_T0021560.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002034 92105958 + MGP_C57BL6NJ_P0021560 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021561.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002047 92004113 + Gigyf2 protein_coding retained_intron MGP_C57BL6NJ_T0021562.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002049 92067463 + Gigyf2 protein_coding processed_transcript MGP_C57BL6NJ_T0021563.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92002067 92114488 + MGP_C57BL6NJ_P0021563 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021564.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92031270 92129473 + MGP_C57BL6NJ_P0021564 Gigyf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021565.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92031270 92129473 + MGP_C57BL6NJ_P0021565 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021566.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92040397 92055582 + Gigyf2 protein_coding retained_intron MGP_C57BL6NJ_T0021567.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92040756 92042251 + Gigyf2 protein_coding retained_intron MGP_C57BL6NJ_T0021568.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92062896 92088173 + Gigyf2 protein_coding processed_transcript MGP_C57BL6NJ_T0021569.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92062917 92087904 + MGP_C57BL6NJ_P0021569 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021572.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92084528 92122241 + MGP_C57BL6NJ_P0021572 Gigyf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021573.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92084587 92088562 + MGP_C57BL6NJ_P0021573 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021574.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92085776 92088472 + MGP_C57BL6NJ_P0021574 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021575.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92085808 92091563 + MGP_C57BL6NJ_P0021575 Gigyf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021576.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92085824 92088227 + MGP_C57BL6NJ_P0021576 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021577.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92088239 92101196 + MGP_C57BL6NJ_P0021577 Gigyf2 protein_coding protein_coding MGP_C57BL6NJ_T0021578.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92101064 92102645 + Gigyf2 protein_coding retained_intron MGP_C57BL6NJ_T0021579.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92113808 92131124 + Gigyf2 protein_coding processed_transcript MGP_C57BL6NJ_T0021580.1 MGP_C57BL6NJ_G0016657.1 mouse_genomes_project 1 92123651 92129536 + Gigyf2 protein_coding retained_intron MGP_C57BL6NJ_T0099310.1 MGP_C57BL6NJ_G0037373.1 mouse_genomes_project 1 171587186 171587826 - Gm37328 sense_intronic sense_intronic MGP_C57BL6NJ_T0024128.1 MGP_C57BL6NJ_G0017216.1 mouse_genomes_project 1 185917674 185945954 - MGP_C57BL6NJ_P0024128 protein_coding protein_coding MGP_C57BL6NJ_T0024129.1 MGP_C57BL6NJ_G0017216.1 mouse_genomes_project 1 185932510 185946529 - protein_coding processed_transcript MGP_C57BL6NJ_T0024130.1 MGP_C57BL6NJ_G0017216.1 mouse_genomes_project 1 185933997 185945655 - MGP_C57BL6NJ_P0024130 protein_coding protein_coding MGP_C57BL6NJ_T0024131.1 MGP_C57BL6NJ_G0017216.1 mouse_genomes_project 1 185934023 185945731 - protein_coding processed_transcript MGP_C57BL6NJ_T0024132.1 MGP_C57BL6NJ_G0017216.1 mouse_genomes_project 1 185936604 185945752 - protein_coding retained_intron MGP_C57BL6NJ_T0009672.1 MGP_C57BL6NJ_G0007757.1 mouse_genomes_project 1 43734094 43734179 + Gm24001 miRNA miRNA MGP_C57BL6NJ_T0023929.1 MGP_C57BL6NJ_G0017161.1 mouse_genomes_project 1 183058165 183079113 + MGP_C57BL6NJ_P0023929 Nectin4 protein_coding protein_coding MGP_C57BL6NJ_T0023930.1 MGP_C57BL6NJ_G0017161.1 mouse_genomes_project 1 183058418 183079424 + MGP_C57BL6NJ_P0023930 Nectin4 protein_coding protein_coding MGP_C57BL6NJ_T0023931.1 MGP_C57BL6NJ_G0017161.1 mouse_genomes_project 1 183058421 183079111 + MGP_C57BL6NJ_P0023931 Nectin4 protein_coding protein_coding MGP_C57BL6NJ_T0020254.1 MGP_C57BL6NJ_G0016411.1 mouse_genomes_project 1 55067450 55077017 - MGP_C57BL6NJ_P0020254 Asnsd1 protein_coding protein_coding MGP_C57BL6NJ_T0020255.1 MGP_C57BL6NJ_G0016411.1 mouse_genomes_project 1 55067478 55077017 - MGP_C57BL6NJ_P0020255 Asnsd1 protein_coding protein_coding MGP_C57BL6NJ_T0020256.1 MGP_C57BL6NJ_G0016411.1 mouse_genomes_project 1 55070664 55077017 - MGP_C57BL6NJ_P0020256 Asnsd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020257.1 MGP_C57BL6NJ_G0016411.1 mouse_genomes_project 1 55071071 55075540 - MGP_C57BL6NJ_P0020257 Asnsd1 protein_coding protein_coding MGP_C57BL6NJ_T0020258.1 MGP_C57BL6NJ_G0016411.1 mouse_genomes_project 1 55073765 55076835 - Asnsd1 protein_coding retained_intron MGP_C57BL6NJ_T0012253.1 MGP_C57BL6NJ_G0010298.1 mouse_genomes_project 1 34868860 34870997 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023882.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182949373 182954571 - Ppox protein_coding retained_intron MGP_C57BL6NJ_T0023883.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182950375 182954571 - Ppox protein_coding retained_intron MGP_C57BL6NJ_T0023884.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182950375 182954571 - MGP_C57BL6NJ_P0023884 Ppox protein_coding protein_coding MGP_C57BL6NJ_T0023885.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182950830 182954145 - MGP_C57BL6NJ_P0023885 Ppox protein_coding protein_coding MGP_C57BL6NJ_T0023886.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182951518 182953212 - Ppox protein_coding retained_intron MGP_C57BL6NJ_T0023887.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182953246 182953907 - Ppox protein_coding processed_transcript MGP_C57BL6NJ_T0023888.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182953493 182954571 - Ppox protein_coding retained_intron MGP_C57BL6NJ_T0023889.1 MGP_C57BL6NJ_G0017154.1 mouse_genomes_project 1 182953749 182954504 - Ppox protein_coding retained_intron MGP_C57BL6NJ_T0000561.1 MGP_C57BL6NJ_G0000478.1 mouse_genomes_project 1 32469677 32472147 + TEC TEC MGP_C57BL6NJ_T0006151.1 MGP_C57BL6NJ_G0005150.1 mouse_genomes_project 1 181693420 181694560 + Gm37748 lincRNA lincRNA MGP_C57BL6NJ_T0005836.1 MGP_C57BL6NJ_G0004909.1 mouse_genomes_project 1 34366090 34374514 - 4930568A12Rik lincRNA lincRNA MGP_C57BL6NJ_T0005837.1 MGP_C57BL6NJ_G0004909.1 mouse_genomes_project 1 34369884 34374836 - 4930568A12Rik lincRNA lincRNA MGP_C57BL6NJ_T0000674.1 MGP_C57BL6NJ_G0000590.1 mouse_genomes_project 1 88973693 88977947 - TEC TEC MGP_C57BL6NJ_T0024349.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193023716 193038765 + MGP_C57BL6NJ_P0024349 Parp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024350.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193023721 193062584 + MGP_C57BL6NJ_P0024350 Parp1 protein_coding protein_coding MGP_C57BL6NJ_T0024351.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193024018 193037228 + MGP_C57BL6NJ_P0024351 Parp1 protein_coding protein_coding MGP_C57BL6NJ_T0024352.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193049108 193051292 + Parp1 protein_coding retained_intron MGP_C57BL6NJ_T0024353.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193059554 193061526 + Parp1 protein_coding retained_intron MGP_C57BL6NJ_T0024354.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193060165 193061436 + Parp1 protein_coding retained_intron MGP_C57BL6NJ_T0024355.1 MGP_C57BL6NJ_G0017270.1 mouse_genomes_project 1 193060317 193062582 + MGP_C57BL6NJ_P0024355 Parp1 protein_coding protein_coding MGP_C57BL6NJ_T0020055.1 MGP_C57BL6NJ_G0016375.1 mouse_genomes_project 1 44780298 44794950 - MGP_C57BL6NJ_P0020055 Mettl21c protein_coding protein_coding MGP_C57BL6NJ_T0020056.1 MGP_C57BL6NJ_G0016375.1 mouse_genomes_project 1 44780825 44792412 - Mettl21c protein_coding processed_transcript MGP_C57BL6NJ_T0020057.1 MGP_C57BL6NJ_G0016375.1 mouse_genomes_project 1 44781400 44794978 - Mettl21c protein_coding retained_intron MGP_C57BL6NJ_T0023955.1 MGP_C57BL6NJ_G0017168.1 mouse_genomes_project 1 183259654 183292166 + MGP_C57BL6NJ_P0023955 Cd244 protein_coding protein_coding MGP_C57BL6NJ_T0023956.1 MGP_C57BL6NJ_G0017168.1 mouse_genomes_project 1 183259654 183322036 + MGP_C57BL6NJ_P0023956 Cd244 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023957.1 MGP_C57BL6NJ_G0017168.1 mouse_genomes_project 1 183259655 183282553 + Cd244 protein_coding retained_intron MGP_C57BL6NJ_T0023958.1 MGP_C57BL6NJ_G0017168.1 mouse_genomes_project 1 183283367 183292166 + Cd244 protein_coding retained_intron MGP_C57BL6NJ_T0021382.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88328702 88600320 - MGP_C57BL6NJ_P0021382 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021383.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88329637 88655442 - MGP_C57BL6NJ_P0021383 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021384.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88330332 88350670 - Pid1 protein_coding processed_transcript MGP_C57BL6NJ_T0021385.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88379821 88600098 - MGP_C57BL6NJ_P0021385 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021386.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88426331 88683010 - MGP_C57BL6NJ_P0021386 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021387.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88433869 88659464 - MGP_C57BL6NJ_P0021387 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021388.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88476212 88600286 - MGP_C57BL6NJ_P0021388 Pid1 protein_coding protein_coding MGP_C57BL6NJ_T0021389.1 MGP_C57BL6NJ_G0016617.1 mouse_genomes_project 1 88598867 88600298 - Pid1 protein_coding retained_intron MGP_C57BL6NJ_T0012330.1 MGP_C57BL6NJ_G0010375.1 mouse_genomes_project 1 60854882 60968187 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021518.1 MGP_C57BL6NJ_G0016646.1 mouse_genomes_project 1 91299084 91303365 - MGP_C57BL6NJ_P0021518 Nppc protein_coding protein_coding MGP_C57BL6NJ_T0012433.1 MGP_C57BL6NJ_G0010478.1 mouse_genomes_project 1 94226892 94227692 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023784.1 MGP_C57BL6NJ_G0017130.1 mouse_genomes_project 1 181800540 181813734 + MGP_C57BL6NJ_P0023784 Sh2d1b1 protein_coding protein_coding MGP_C57BL6NJ_T0099237.1 MGP_C57BL6NJ_G0037301.1 mouse_genomes_project 1 135440551 135440681 + Gm23370 scaRNA scaRNA MGP_C57BL6NJ_T0012603.1 MGP_C57BL6NJ_G0010648.1 mouse_genomes_project 1 170131174 170131680 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012441.1 MGP_C57BL6NJ_G0010486.1 mouse_genomes_project 1 98661001 98661790 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102677.1 MGP_C57BL6NJ_G0040472.1 mouse_genomes_project 1 125153812 125172867 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0021886.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98459077 98531547 + MGP_C57BL6NJ_P0021886 Sned1 protein_coding protein_coding MGP_C57BL6NJ_T0021887.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98459087 98511770 + Sned1 protein_coding retained_intron MGP_C57BL6NJ_T0021888.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98501695 98509580 + Sned1 protein_coding processed_transcript MGP_C57BL6NJ_T0021889.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98508499 98526269 + MGP_C57BL6NJ_P0021889 Sned1 protein_coding protein_coding MGP_C57BL6NJ_T0021890.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98514104 98526958 + Sned1 protein_coding retained_intron MGP_C57BL6NJ_T0021891.1 MGP_C57BL6NJ_G0016733.1 mouse_genomes_project 1 98526176 98527080 + Sned1 protein_coding retained_intron MGP_C57BL6NJ_T0002892.1 MGP_C57BL6NJ_G0002746.1 mouse_genomes_project 1 3454101 3459500 - 4732440D04Rik antisense antisense MGP_C57BL6NJ_T0002893.1 MGP_C57BL6NJ_G0002746.1 mouse_genomes_project 1 3457499 3458797 - 4732440D04Rik antisense antisense MGP_C57BL6NJ_T0002894.1 MGP_C57BL6NJ_G0002746.1 mouse_genomes_project 1 3458818 3459499 - 4732440D04Rik antisense antisense MGP_C57BL6NJ_T0005840.1 MGP_C57BL6NJ_G0004912.1 mouse_genomes_project 1 35938099 35941926 + lincRNA lincRNA MGP_C57BL6NJ_T0024048.1 MGP_C57BL6NJ_G0017190.1 mouse_genomes_project 1 184270724 184273942 + MGP_C57BL6NJ_P0024048 Slamf9 protein_coding protein_coding MGP_C57BL6NJ_T0012321.1 MGP_C57BL6NJ_G0010366.1 mouse_genomes_project 1 57115825 57116816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012316.1 MGP_C57BL6NJ_G0010361.1 mouse_genomes_project 1 55087022 55087345 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000703.1 MGP_C57BL6NJ_G0000619.1 mouse_genomes_project 1 101311886 101314980 + TEC TEC MGP_C57BL6NJ_T0006035.1 MGP_C57BL6NJ_G0005059.1 mouse_genomes_project 1 126749235 126758587 + Gm29455 lincRNA lincRNA MGP_C57BL6NJ_T0006036.1 MGP_C57BL6NJ_G0005059.1 mouse_genomes_project 1 126749277 126810897 + Gm29455 lincRNA lincRNA MGP_C57BL6NJ_T0006066.1 MGP_C57BL6NJ_G0005083.1 mouse_genomes_project 1 142481964 142485116 + Gm28441 lincRNA lincRNA MGP_C57BL6NJ_T0100887.1 MGP_C57BL6NJ_G0038933.1 mouse_genomes_project 1 90946815 90946895 - Gm24148 snoRNA snoRNA MGP_C57BL6NJ_T0005995.1 MGP_C57BL6NJ_G0005025.1 mouse_genomes_project 1 96062880 96063682 - Gm28199 lincRNA lincRNA MGP_C57BL6NJ_T0020837.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773794 74846448 - MGP_C57BL6NJ_P0020837 Fn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020838.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773799 74846638 - MGP_C57BL6NJ_P0020838 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020839.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773802 74846638 - MGP_C57BL6NJ_P0020839 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020840.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773802 74846638 - MGP_C57BL6NJ_P0020840 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020841.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773802 74846638 - MGP_C57BL6NJ_P0020841 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020842.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773803 74846638 - MGP_C57BL6NJ_P0020842 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020843.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773803 74846666 - MGP_C57BL6NJ_P0020843 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020844.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773803 74846641 - MGP_C57BL6NJ_P0020844 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020845.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74773805 74798957 - Fn1 protein_coding retained_intron MGP_C57BL6NJ_T0020846.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74775140 74779351 - Fn1 protein_coding retained_intron MGP_C57BL6NJ_T0020847.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74778376 74788718 - MGP_C57BL6NJ_P0020847 Fn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020848.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74786709 74790726 - MGP_C57BL6NJ_P0020848 Fn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020849.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74788736 74791194 - Fn1 protein_coding retained_intron MGP_C57BL6NJ_T0020850.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74792446 74813990 - Fn1 protein_coding retained_intron MGP_C57BL6NJ_T0020851.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74819147 74832222 - MGP_C57BL6NJ_P0020851 Fn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020852.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74833758 74846627 - MGP_C57BL6NJ_P0020852 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0020853.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74835410 74846638 - Fn1 protein_coding retained_intron MGP_C57BL6NJ_T0020854.1 MGP_C57BL6NJ_G0016518.1 mouse_genomes_project 1 74838814 74846638 - MGP_C57BL6NJ_P0020854 Fn1 protein_coding protein_coding MGP_C57BL6NJ_T0021892.1 MGP_C57BL6NJ_G0016734.1 mouse_genomes_project 1 98529692 98536345 - MGP_C57BL6NJ_P0021892 Mterf4 protein_coding protein_coding MGP_C57BL6NJ_T0021893.1 MGP_C57BL6NJ_G0016734.1 mouse_genomes_project 1 98531686 98536397 - MGP_C57BL6NJ_P0021893 Mterf4 protein_coding protein_coding MGP_C57BL6NJ_T0021894.1 MGP_C57BL6NJ_G0016734.1 mouse_genomes_project 1 98531909 98533384 - Mterf4 protein_coding processed_transcript MGP_C57BL6NJ_T0021895.1 MGP_C57BL6NJ_G0016734.1 mouse_genomes_project 1 98532398 98536346 - MGP_C57BL6NJ_P0021895 Mterf4 protein_coding protein_coding MGP_C57BL6NJ_T0021896.1 MGP_C57BL6NJ_G0016734.1 mouse_genomes_project 1 98533979 98536361 - Mterf4 protein_coding retained_intron MGP_C57BL6NJ_T0012056.1 MGP_C57BL6NJ_G0010139.1 mouse_genomes_project 1 186249328 186250378 + MGP_C57BL6NJ_P0012056 Olfr421-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0009745.1 MGP_C57BL6NJ_G0007830.1 mouse_genomes_project 1 188955454 188955553 - Mir350 miRNA miRNA MGP_C57BL6NJ_T0000736.1 MGP_C57BL6NJ_G0000652.1 mouse_genomes_project 1 132742397 132745424 - TEC TEC MGP_C57BL6NJ_T0012618.1 MGP_C57BL6NJ_G0010663.1 mouse_genomes_project 1 176984523 176985585 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020368.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60154961 60169945 - MGP_C57BL6NJ_P0020368 Kctd18 protein_coding protein_coding MGP_C57BL6NJ_T0020369.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60155108 60169989 - MGP_C57BL6NJ_P0020369 Kctd18 protein_coding protein_coding MGP_C57BL6NJ_T0020370.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60155113 60169385 - MGP_C57BL6NJ_P0020370 Kctd18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020371.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60155932 60218955 - MGP_C57BL6NJ_P0020371 Kctd18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020372.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60156440 60169909 - MGP_C57BL6NJ_P0020372 Kctd18 protein_coding protein_coding MGP_C57BL6NJ_T0020373.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60156552 60163308 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0020374.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60156580 60161963 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0020375.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60159914 60169913 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0020376.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60161018 60162842 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0020377.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60163426 60169940 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0020378.1 MGP_C57BL6NJ_G0016434.1 mouse_genomes_project 1 60163462 60169940 - Kctd18 protein_coding retained_intron MGP_C57BL6NJ_T0005849.1 MGP_C57BL6NJ_G0004920.1 mouse_genomes_project 1 39355868 39365319 - Gm37821 lincRNA lincRNA MGP_C57BL6NJ_T0017471.1 MGP_C57BL6NJ_G0015496.1 mouse_genomes_project 1 78684480 78697894 - Gm29253 processed_transcript processed_transcript MGP_C57BL6NJ_T0102658.1 MGP_C57BL6NJ_G0040453.1 mouse_genomes_project 1 92918875 92919659 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022396.1 MGP_C57BL6NJ_G0016847.1 mouse_genomes_project 1 139267275 139282244 + MGP_C57BL6NJ_P0022396 Fcmr protein_coding protein_coding MGP_C57BL6NJ_T0022397.1 MGP_C57BL6NJ_G0016847.1 mouse_genomes_project 1 139267386 139276699 + Fcmr protein_coding processed_transcript MGP_C57BL6NJ_T0022398.1 MGP_C57BL6NJ_G0016847.1 mouse_genomes_project 1 139279736 139282232 + Fcmr protein_coding processed_transcript MGP_C57BL6NJ_T0022399.1 MGP_C57BL6NJ_G0016847.1 mouse_genomes_project 1 139279909 139282243 + Fcmr protein_coding processed_transcript MGP_C57BL6NJ_T0003112.1 MGP_C57BL6NJ_G0002909.1 mouse_genomes_project 1 191242544 191262281 - Gm16564 antisense antisense MGP_C57BL6NJ_T0012479.1 MGP_C57BL6NJ_G0010524.1 mouse_genomes_project 1 114842154 114844623 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012176.1 MGP_C57BL6NJ_G0010221.1 mouse_genomes_project 1 10476216 10476903 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000723.1 MGP_C57BL6NJ_G0000639.1 mouse_genomes_project 1 128858828 128859505 - TEC TEC MGP_C57BL6NJ_T0024162.1 MGP_C57BL6NJ_G0017236.1 mouse_genomes_project 1 186965600 187053368 - MGP_C57BL6NJ_P0024162 Grem2 protein_coding protein_coding MGP_C57BL6NJ_T0024151.1 MGP_C57BL6NJ_G0017232.1 mouse_genomes_project 1 186488553 186489563 + MGP_C57BL6NJ_P0024151 Olfr248 protein_coding protein_coding MGP_C57BL6NJ_T0000527.1 MGP_C57BL6NJ_G0000446.1 mouse_genomes_project 1 19757788 19761936 + TEC TEC MGP_C57BL6NJ_T0100893.1 MGP_C57BL6NJ_G0038939.1 mouse_genomes_project 1 108106117 108106249 - Gm24122 snoRNA snoRNA MGP_C57BL6NJ_T0100854.1 MGP_C57BL6NJ_G0038900.1 mouse_genomes_project 1 19414058 19414189 - Gm24171 snoRNA snoRNA MGP_C57BL6NJ_T0021761.1 MGP_C57BL6NJ_G0016703.1 mouse_genomes_project 1 96470671 96478459 + MGP_C57BL6NJ_P0021761 Fam132b protein_coding protein_coding MGP_C57BL6NJ_T0021762.1 MGP_C57BL6NJ_G0016703.1 mouse_genomes_project 1 96474935 96478334 + MGP_C57BL6NJ_P0021762 Fam132b protein_coding protein_coding MGP_C57BL6NJ_T0006002.1 MGP_C57BL6NJ_G0005032.1 mouse_genomes_project 1 97908016 97910985 - Gm29483 lincRNA lincRNA MGP_C57BL6NJ_T0012258.1 MGP_C57BL6NJ_G0010303.1 mouse_genomes_project 1 36732478 36732782 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023713.1 MGP_C57BL6NJ_G0017109.1 mouse_genomes_project 1 177760083 177786441 - MGP_C57BL6NJ_P0023713 Gm4846 protein_coding protein_coding MGP_C57BL6NJ_T0012625.1 MGP_C57BL6NJ_G0010670.1 mouse_genomes_project 1 178650711 178651078 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100933.1 MGP_C57BL6NJ_G0038979.1 mouse_genomes_project 1 176660303 176660388 + Gm24637 snoRNA snoRNA MGP_C57BL6NJ_T0102648.1 MGP_C57BL6NJ_G0040443.1 mouse_genomes_project 1 82200513 82200897 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005882.1 MGP_C57BL6NJ_G0004937.1 mouse_genomes_project 1 51960075 51960603 - Gm29665 lincRNA lincRNA MGP_C57BL6NJ_T0022128.1 MGP_C57BL6NJ_G0016792.1 mouse_genomes_project 1 125463347 125492273 + MGP_C57BL6NJ_P0022128 protein_coding protein_coding MGP_C57BL6NJ_T0024514.1 MGP_C57BL6NJ_G0017308.1 mouse_genomes_project 1 197529410 197535723 - MGP_C57BL6NJ_P0024514 Hlx protein_coding protein_coding MGP_C57BL6NJ_T0024515.1 MGP_C57BL6NJ_G0017308.1 mouse_genomes_project 1 197529417 197533879 - MGP_C57BL6NJ_P0024515 Hlx protein_coding protein_coding MGP_C57BL6NJ_T0012278.1 MGP_C57BL6NJ_G0010323.1 mouse_genomes_project 1 45425107 45425527 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012323.1 MGP_C57BL6NJ_G0010368.1 mouse_genomes_project 1 57344256 57344652 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005835.1 MGP_C57BL6NJ_G0004908.1 mouse_genomes_project 1 34301990 34308253 - Gm37233 lincRNA lincRNA MGP_C57BL6NJ_T0019167.1 MGP_C57BL6NJ_G0016198.1 mouse_genomes_project 1 1395481 1520558 - MGP_C57BL6NJ_P0019167 Rp1 protein_coding protein_coding MGP_C57BL6NJ_T0019168.1 MGP_C57BL6NJ_G0016198.1 mouse_genomes_project 1 1456222 1472391 - MGP_C57BL6NJ_P0019168 Rp1 protein_coding protein_coding MGP_C57BL6NJ_T0024049.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277151 184284953 + MGP_C57BL6NJ_P0024049 Igsf9 protein_coding protein_coding MGP_C57BL6NJ_T0024050.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277562 184287001 + MGP_C57BL6NJ_P0024050 Igsf9 protein_coding protein_coding MGP_C57BL6NJ_T0024051.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277569 184284990 + Igsf9 protein_coding processed_transcript MGP_C57BL6NJ_T0024052.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277578 184294237 + MGP_C57BL6NJ_P0024052 Igsf9 protein_coding protein_coding MGP_C57BL6NJ_T0024053.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277583 184285173 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024054.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277583 184286405 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024055.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277594 184294237 + MGP_C57BL6NJ_P0024055 Igsf9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024056.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184277677 184294238 + MGP_C57BL6NJ_P0024056 Igsf9 protein_coding protein_coding MGP_C57BL6NJ_T0024057.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184286446 184287340 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024058.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184287323 184290221 + MGP_C57BL6NJ_P0024058 Igsf9 protein_coding protein_coding MGP_C57BL6NJ_T0024059.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184289293 184291082 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024060.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184289320 184291108 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024061.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184290113 184291570 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0024062.1 MGP_C57BL6NJ_G0017191.1 mouse_genomes_project 1 184293139 184293961 + Igsf9 protein_coding retained_intron MGP_C57BL6NJ_T0006222.1 MGP_C57BL6NJ_G0005204.1 mouse_genomes_project 1 206485869 206487302 - Gm31406 lincRNA lincRNA MGP_C57BL6NJ_T0099661.1 MGP_C57BL6NJ_G0037707.1 mouse_genomes_project 1 201902633 201902737 + Gm25269 snRNA snRNA MGP_C57BL6NJ_T0017482.1 MGP_C57BL6NJ_G0015501.1 mouse_genomes_project 1 94932181 94933810 + D130058E05Rik processed_transcript antisense MGP_C57BL6NJ_T0017483.1 MGP_C57BL6NJ_G0015501.1 mouse_genomes_project 1 94932208 94935239 + D130058E05Rik processed_transcript retained_intron MGP_C57BL6NJ_T0000571.1 MGP_C57BL6NJ_G0000487.1 mouse_genomes_project 1 34099459 34101684 + TEC TEC MGP_C57BL6NJ_T0000859.1 MGP_C57BL6NJ_G0000773.1 mouse_genomes_project 1 175720547 175723642 + TEC TEC MGP_C57BL6NJ_T0012616.1 MGP_C57BL6NJ_G0010661.1 mouse_genomes_project 1 176841646 176842478 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000925.1 MGP_C57BL6NJ_G0000837.1 mouse_genomes_project 1 204920698 204921706 - TEC TEC MGP_C57BL6NJ_T0024387.1 MGP_C57BL6NJ_G0017280.1 mouse_genomes_project 1 193548431 193574063 - MGP_C57BL6NJ_P0024387 Ephx1 protein_coding protein_coding MGP_C57BL6NJ_T0024388.1 MGP_C57BL6NJ_G0017280.1 mouse_genomes_project 1 193566134 193597055 - MGP_C57BL6NJ_P0024388 Ephx1 protein_coding protein_coding MGP_C57BL6NJ_T0024389.1 MGP_C57BL6NJ_G0017280.1 mouse_genomes_project 1 193566134 193597055 - MGP_C57BL6NJ_P0024389 Ephx1 protein_coding protein_coding MGP_C57BL6NJ_T0024390.1 MGP_C57BL6NJ_G0017280.1 mouse_genomes_project 1 193574041 193600390 - MGP_C57BL6NJ_P0024390 Ephx1 protein_coding protein_coding MGP_C57BL6NJ_T0009705.1 MGP_C57BL6NJ_G0007790.1 mouse_genomes_project 1 92719947 92720057 + Gm25198 miRNA miRNA MGP_C57BL6NJ_T0005838.1 MGP_C57BL6NJ_G0004910.1 mouse_genomes_project 1 35652355 35677968 - Gm37068 lincRNA lincRNA MGP_C57BL6NJ_T0021624.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92544167 92645435 + MGP_C57BL6NJ_P0021624 Dgkd protein_coding protein_coding MGP_C57BL6NJ_T0021625.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92573081 92616711 + Dgkd protein_coding retained_intron MGP_C57BL6NJ_T0021626.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92618864 92622938 + Dgkd protein_coding retained_intron MGP_C57BL6NJ_T0021627.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92632948 92639198 + MGP_C57BL6NJ_P0021627 Dgkd protein_coding protein_coding MGP_C57BL6NJ_T0021628.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92635341 92646125 + MGP_C57BL6NJ_P0021628 Dgkd protein_coding protein_coding MGP_C57BL6NJ_T0021629.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92636227 92641210 + Dgkd protein_coding retained_intron MGP_C57BL6NJ_T0021630.1 MGP_C57BL6NJ_G0016666.1 mouse_genomes_project 1 92639329 92646123 + MGP_C57BL6NJ_P0021630 Dgkd protein_coding protein_coding MGP_C57BL6NJ_T0006077.1 MGP_C57BL6NJ_G0005094.1 mouse_genomes_project 1 145532694 145550618 + Gm19705 lincRNA lincRNA MGP_C57BL6NJ_T0006078.1 MGP_C57BL6NJ_G0005094.1 mouse_genomes_project 1 145538403 145544656 + Gm19705 lincRNA lincRNA MGP_C57BL6NJ_T0006079.1 MGP_C57BL6NJ_G0005094.1 mouse_genomes_project 1 145545324 145552620 + Gm19705 lincRNA lincRNA MGP_C57BL6NJ_T0006080.1 MGP_C57BL6NJ_G0005094.1 mouse_genomes_project 1 145545557 145552618 + Gm19705 lincRNA lincRNA MGP_C57BL6NJ_T0022367.1 MGP_C57BL6NJ_G0016838.1 mouse_genomes_project 1 138747855 138767022 - MGP_C57BL6NJ_P0022367 Cd55b protein_coding protein_coding MGP_C57BL6NJ_T0022368.1 MGP_C57BL6NJ_G0016838.1 mouse_genomes_project 1 138757755 138766753 - Cd55b protein_coding processed_transcript MGP_C57BL6NJ_T0021677.1 MGP_C57BL6NJ_G0016686.1 mouse_genomes_project 1 94433923 94897897 + MGP_C57BL6NJ_P0021677 Agap1 protein_coding protein_coding MGP_C57BL6NJ_T0021678.1 MGP_C57BL6NJ_G0016686.1 mouse_genomes_project 1 94433991 94890281 + MGP_C57BL6NJ_P0021678 Agap1 protein_coding protein_coding MGP_C57BL6NJ_T0021679.1 MGP_C57BL6NJ_G0016686.1 mouse_genomes_project 1 94434373 94438824 + Agap1 protein_coding retained_intron MGP_C57BL6NJ_T0021680.1 MGP_C57BL6NJ_G0016686.1 mouse_genomes_project 1 94565336 94895557 + MGP_C57BL6NJ_P0021680 Agap1 protein_coding protein_coding MGP_C57BL6NJ_T0021681.1 MGP_C57BL6NJ_G0016686.1 mouse_genomes_project 1 94565847 94889174 + MGP_C57BL6NJ_P0021681 Agap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099611.1 MGP_C57BL6NJ_G0037657.1 mouse_genomes_project 1 98601344 98601447 + Gm26446 snRNA snRNA MGP_C57BL6NJ_T0012485.1 MGP_C57BL6NJ_G0010530.1 mouse_genomes_project 1 117023069 117023607 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102672.1 MGP_C57BL6NJ_G0040467.1 mouse_genomes_project 1 113555481 113557564 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012412.1 MGP_C57BL6NJ_G0010457.1 mouse_genomes_project 1 88482603 88483149 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006089.1 MGP_C57BL6NJ_G0005101.1 mouse_genomes_project 1 147923614 147924280 - 1700019P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0000862.1 MGP_C57BL6NJ_G0000776.1 mouse_genomes_project 1 176687126 176688160 + TEC TEC MGP_C57BL6NJ_T0012256.1 MGP_C57BL6NJ_G0010301.1 mouse_genomes_project 1 34944576 34944811 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017458.1 MGP_C57BL6NJ_G0015490.1 mouse_genomes_project 1 45172067 45173706 + Gm28893 processed_transcript processed_transcript MGP_C57BL6NJ_T0000834.1 MGP_C57BL6NJ_G0000748.1 mouse_genomes_project 1 169223158 169225760 + TEC TEC MGP_C57BL6NJ_T0020236.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 54915146 55018129 - MGP_C57BL6NJ_P0020236 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020237.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 54923039 55018128 - MGP_C57BL6NJ_P0020237 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020238.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 54993574 55018086 - MGP_C57BL6NJ_P0020238 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020239.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 55000948 55008034 - MGP_C57BL6NJ_P0020239 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020240.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 55000970 55018126 - MGP_C57BL6NJ_P0020240 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020241.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 55007589 55018126 - MGP_C57BL6NJ_P0020241 Pms1 protein_coding protein_coding MGP_C57BL6NJ_T0020242.1 MGP_C57BL6NJ_G0016406.1 mouse_genomes_project 1 55016403 55018126 - Pms1 protein_coding retained_intron MGP_C57BL6NJ_T0022087.1 MGP_C57BL6NJ_G0016775.1 mouse_genomes_project 1 113318203 113341108 + MGP_C57BL6NJ_P0022087 Serpinb13 protein_coding protein_coding MGP_C57BL6NJ_T0022088.1 MGP_C57BL6NJ_G0016775.1 mouse_genomes_project 1 113318213 113340811 + MGP_C57BL6NJ_P0022088 Serpinb13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017503.1 MGP_C57BL6NJ_G0015506.1 mouse_genomes_project 1 144955374 144960350 - Gm15850 processed_transcript processed_transcript MGP_C57BL6NJ_T0017504.1 MGP_C57BL6NJ_G0015506.1 mouse_genomes_project 1 144956915 144960338 - Gm15850 processed_transcript processed_transcript MGP_C57BL6NJ_T0017505.1 MGP_C57BL6NJ_G0015506.1 mouse_genomes_project 1 144956915 144960338 - Gm15850 processed_transcript processed_transcript MGP_C57BL6NJ_T0017506.1 MGP_C57BL6NJ_G0015506.1 mouse_genomes_project 1 144956915 144960338 - Gm15850 processed_transcript processed_transcript MGP_C57BL6NJ_T0022404.1 MGP_C57BL6NJ_G0016849.1 mouse_genomes_project 1 139313366 139317183 - MGP_C57BL6NJ_P0022404 Il20 protein_coding protein_coding MGP_C57BL6NJ_T0022405.1 MGP_C57BL6NJ_G0016849.1 mouse_genomes_project 1 139313796 139316958 - MGP_C57BL6NJ_P0022405 Il20 protein_coding protein_coding MGP_C57BL6NJ_T0000574.1 MGP_C57BL6NJ_G0000490.1 mouse_genomes_project 1 36102673 36104045 - TEC TEC MGP_C57BL6NJ_T0009695.1 MGP_C57BL6NJ_G0007780.1 mouse_genomes_project 1 80109299 80109383 + Mir6343 miRNA miRNA MGP_C57BL6NJ_T0002912.1 MGP_C57BL6NJ_G0002756.1 mouse_genomes_project 1 15984931 16052148 - Gm28153 antisense antisense MGP_C57BL6NJ_T0006194.1 MGP_C57BL6NJ_G0005181.1 mouse_genomes_project 1 197540030 197543711 + Gm34342 lincRNA lincRNA MGP_C57BL6NJ_T0000864.1 MGP_C57BL6NJ_G0000778.1 mouse_genomes_project 1 177105842 177106404 - TEC TEC MGP_C57BL6NJ_T0022464.1 MGP_C57BL6NJ_G0016864.1 mouse_genomes_project 1 140292698 140295483 + Slc41a1 protein_coding processed_transcript MGP_C57BL6NJ_T0022465.1 MGP_C57BL6NJ_G0016864.1 mouse_genomes_project 1 140293182 140314371 + MGP_C57BL6NJ_P0022465 Slc41a1 protein_coding protein_coding MGP_C57BL6NJ_T0022466.1 MGP_C57BL6NJ_G0016864.1 mouse_genomes_project 1 140308345 140312135 + Slc41a1 protein_coding retained_intron MGP_C57BL6NJ_T0020935.1 MGP_C57BL6NJ_G0016539.1 mouse_genomes_project 1 77874494 77881425 + MGP_C57BL6NJ_P0020935 Catip protein_coding protein_coding MGP_C57BL6NJ_T0020936.1 MGP_C57BL6NJ_G0016539.1 mouse_genomes_project 1 77874752 77879902 + MGP_C57BL6NJ_P0020936 Catip protein_coding protein_coding MGP_C57BL6NJ_T0020937.1 MGP_C57BL6NJ_G0016539.1 mouse_genomes_project 1 77874828 77881254 + MGP_C57BL6NJ_P0020937 Catip protein_coding protein_coding MGP_C57BL6NJ_T0020938.1 MGP_C57BL6NJ_G0016539.1 mouse_genomes_project 1 77876917 77878846 + Catip protein_coding retained_intron MGP_C57BL6NJ_T0098941.1 MGP_C57BL6NJ_G0037005.1 mouse_genomes_project 1 177039085 177039203 - Gm24808 rRNA rRNA MGP_C57BL6NJ_T0100858.1 MGP_C57BL6NJ_G0038904.1 mouse_genomes_project 1 30847747 30847874 - Gm26145 snoRNA snoRNA MGP_C57BL6NJ_T0000706.1 MGP_C57BL6NJ_G0000622.1 mouse_genomes_project 1 103597380 103599064 - TEC TEC MGP_C57BL6NJ_T0003106.1 MGP_C57BL6NJ_G0002904.1 mouse_genomes_project 1 188937355 188941715 + Gm36992 antisense antisense MGP_C57BL6NJ_T0000851.1 MGP_C57BL6NJ_G0000765.1 mouse_genomes_project 1 171883299 171884471 + TEC TEC MGP_C57BL6NJ_T0012628.1 MGP_C57BL6NJ_G0010673.1 mouse_genomes_project 1 181059990 181061146 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000682.1 MGP_C57BL6NJ_G0000598.1 mouse_genomes_project 1 91481715 91484499 + TEC TEC MGP_C57BL6NJ_T0003011.1 MGP_C57BL6NJ_G0002834.1 mouse_genomes_project 1 111606088 111613243 + Gm17634 antisense antisense MGP_C57BL6NJ_T0003012.1 MGP_C57BL6NJ_G0002834.1 mouse_genomes_project 1 111606844 111613350 + Gm17634 antisense antisense MGP_C57BL6NJ_T0003013.1 MGP_C57BL6NJ_G0002834.1 mouse_genomes_project 1 111607230 111607594 + Gm17634 antisense antisense MGP_C57BL6NJ_T0012657.1 MGP_C57BL6NJ_G0010702.1 mouse_genomes_project 1 196400415 196400766 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012392.1 MGP_C57BL6NJ_G0010437.1 mouse_genomes_project 1 82608454 82610403 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099589.1 MGP_C57BL6NJ_G0037635.1 mouse_genomes_project 1 54148879 54148988 - Gm23460 snRNA snRNA MGP_C57BL6NJ_T0009661.1 MGP_C57BL6NJ_G0007746.1 mouse_genomes_project 1 28694948 28695048 + Gm22679 miRNA miRNA MGP_C57BL6NJ_T0102662.1 MGP_C57BL6NJ_G0040457.1 mouse_genomes_project 1 97780133 97780179 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0020978.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78093395 78116334 - MGP_C57BL6NJ_P0020978 Zfp142 protein_coding protein_coding MGP_C57BL6NJ_T0020979.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78094694 78116331 - MGP_C57BL6NJ_P0020979 Zfp142 protein_coding protein_coding MGP_C57BL6NJ_T0020980.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78094770 78116451 - MGP_C57BL6NJ_P0020980 Zfp142 protein_coding protein_coding MGP_C57BL6NJ_T0020981.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78094951 78116552 - MGP_C57BL6NJ_P0020981 Zfp142 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020982.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78095137 78113932 - MGP_C57BL6NJ_P0020982 Zfp142 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020983.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78110493 78116501 - Zfp142 protein_coding retained_intron MGP_C57BL6NJ_T0020984.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78110500 78116258 - Zfp142 protein_coding retained_intron MGP_C57BL6NJ_T0020985.1 MGP_C57BL6NJ_G0016546.1 mouse_genomes_project 1 78113853 78116439 - Zfp142 protein_coding processed_transcript MGP_C57BL6NJ_T0003001.1 MGP_C57BL6NJ_G0002826.1 mouse_genomes_project 1 98041535 98048133 - Gm29480 antisense antisense MGP_C57BL6NJ_T0099626.1 MGP_C57BL6NJ_G0037672.1 mouse_genomes_project 1 138974411 138974518 - Gm23623 snRNA snRNA MGP_C57BL6NJ_T0012293.1 MGP_C57BL6NJ_G0010338.1 mouse_genomes_project 1 48166662 48166959 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000910.1 MGP_C57BL6NJ_G0000822.1 mouse_genomes_project 1 197215160 197215915 + TEC TEC MGP_C57BL6NJ_T0024817.1 MGP_C57BL6NJ_G0017367.1 mouse_genomes_project 1 208587019 208645472 - MGP_C57BL6NJ_P0024817 Cd46 protein_coding protein_coding MGP_C57BL6NJ_T0024818.1 MGP_C57BL6NJ_G0017367.1 mouse_genomes_project 1 208592029 208620097 - Cd46 protein_coding retained_intron MGP_C57BL6NJ_T0024819.1 MGP_C57BL6NJ_G0017367.1 mouse_genomes_project 1 208592094 208645448 - MGP_C57BL6NJ_P0024819 Cd46 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024820.1 MGP_C57BL6NJ_G0017367.1 mouse_genomes_project 1 208592117 208634653 - Cd46 protein_coding retained_intron MGP_C57BL6NJ_T0000652.1 MGP_C57BL6NJ_G0000568.1 mouse_genomes_project 1 79000540 79002732 - TEC TEC MGP_C57BL6NJ_T0100906.1 MGP_C57BL6NJ_G0038952.1 mouse_genomes_project 1 136685140 136685274 + Gm23902 snoRNA snoRNA MGP_C57BL6NJ_T0012243.1 MGP_C57BL6NJ_G0010288.1 mouse_genomes_project 1 33815234 33815568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005959.1 MGP_C57BL6NJ_G0004994.1 mouse_genomes_project 1 81213294 81215143 + Gm28386 lincRNA lincRNA MGP_C57BL6NJ_T0000518.1 MGP_C57BL6NJ_G0000437.1 mouse_genomes_project 1 12176995 12177434 - TEC TEC MGP_C57BL6NJ_T0000689.1 MGP_C57BL6NJ_G0000605.1 mouse_genomes_project 1 92595734 92600397 + TEC TEC MGP_C57BL6NJ_T0012552.1 MGP_C57BL6NJ_G0010597.1 mouse_genomes_project 1 147737041 147737363 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006218.1 MGP_C57BL6NJ_G0005201.1 mouse_genomes_project 1 204822524 204851710 - Gm32200 lincRNA lincRNA MGP_C57BL6NJ_T0020503.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61829236 61958644 + MGP_C57BL6NJ_P0020503 Gm973 protein_coding protein_coding MGP_C57BL6NJ_T0020504.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61842680 61845358 + MGP_C57BL6NJ_P0020504 Gm973 protein_coding protein_coding MGP_C57BL6NJ_T0020505.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61843044 61920260 + MGP_C57BL6NJ_P0020505 Gm973 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020506.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61865738 61878780 + Gm973 protein_coding retained_intron MGP_C57BL6NJ_T0020507.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61871292 61884762 + Gm973 protein_coding processed_transcript MGP_C57BL6NJ_T0020508.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61880493 61888597 + Gm973 protein_coding retained_intron MGP_C57BL6NJ_T0020510.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61929760 61952396 + Gm973 protein_coding processed_transcript MGP_C57BL6NJ_T0020511.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61929794 61954438 + Gm973 protein_coding processed_transcript MGP_C57BL6NJ_T0020512.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61942391 61952378 + Gm973 protein_coding processed_transcript MGP_C57BL6NJ_T0020513.1 MGP_C57BL6NJ_G0016458.1 mouse_genomes_project 1 61954457 61960552 + MGP_C57BL6NJ_P0020513 Gm973 protein_coding protein_coding MGP_C57BL6NJ_T0023152.1 MGP_C57BL6NJ_G0017003.1 mouse_genomes_project 1 164060202 164066203 + MGP_C57BL6NJ_P0023152 Rgs16 protein_coding protein_coding MGP_C57BL6NJ_T0023861.1 MGP_C57BL6NJ_G0017150.1 mouse_genomes_project 1 182893958 182898627 - MGP_C57BL6NJ_P0023861 Fcer1g protein_coding protein_coding MGP_C57BL6NJ_T0023862.1 MGP_C57BL6NJ_G0017150.1 mouse_genomes_project 1 182893965 182898569 - MGP_C57BL6NJ_P0023862 Fcer1g protein_coding protein_coding MGP_C57BL6NJ_T0023863.1 MGP_C57BL6NJ_G0017150.1 mouse_genomes_project 1 182895437 182898601 - Fcer1g protein_coding retained_intron MGP_C57BL6NJ_T0020967.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070478 78096063 + MGP_C57BL6NJ_P0020967 Plcd4 protein_coding protein_coding MGP_C57BL6NJ_T0020968.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070478 78096063 + MGP_C57BL6NJ_P0020968 Plcd4 protein_coding protein_coding MGP_C57BL6NJ_T0020969.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070478 78096063 + MGP_C57BL6NJ_P0020969 Plcd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020970.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070493 78088875 + Plcd4 protein_coding retained_intron MGP_C57BL6NJ_T0020971.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070493 78094246 + MGP_C57BL6NJ_P0020971 Plcd4 protein_coding protein_coding MGP_C57BL6NJ_T0020972.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78070493 78094246 + MGP_C57BL6NJ_P0020972 Plcd4 protein_coding protein_coding MGP_C57BL6NJ_T0020973.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78071950 78073862 + Plcd4 protein_coding retained_intron MGP_C57BL6NJ_T0020974.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78071954 78094246 + MGP_C57BL6NJ_P0020974 Plcd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020975.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78071954 78094246 + MGP_C57BL6NJ_P0020975 Plcd4 protein_coding protein_coding MGP_C57BL6NJ_T0020976.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78088695 78093570 + Plcd4 protein_coding processed_transcript MGP_C57BL6NJ_T0020977.1 MGP_C57BL6NJ_G0016545.1 mouse_genomes_project 1 78092705 78093895 + Plcd4 protein_coding retained_intron MGP_C57BL6NJ_T0005818.1 MGP_C57BL6NJ_G0004892.1 mouse_genomes_project 1 17628571 17629616 + Gm28340 lincRNA lincRNA MGP_C57BL6NJ_T0012159.1 MGP_C57BL6NJ_G0010204.1 mouse_genomes_project 1 6342603 6342943 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024807.1 MGP_C57BL6NJ_G0017365.1 mouse_genomes_project 1 208151786 208154428 + Plxna2 protein_coding retained_intron MGP_C57BL6NJ_T0024808.1 MGP_C57BL6NJ_G0017365.1 mouse_genomes_project 1 208153385 208359849 + MGP_C57BL6NJ_P0024808 Plxna2 protein_coding protein_coding MGP_C57BL6NJ_T0024809.1 MGP_C57BL6NJ_G0017365.1 mouse_genomes_project 1 208178397 208193034 + Plxna2 protein_coding processed_transcript MGP_C57BL6NJ_T0024810.1 MGP_C57BL6NJ_G0017365.1 mouse_genomes_project 1 208306428 208328503 + MGP_C57BL6NJ_P0024810 Plxna2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024811.1 MGP_C57BL6NJ_G0017365.1 mouse_genomes_project 1 208346584 208357207 + Plxna2 protein_coding retained_intron MGP_C57BL6NJ_T0012221.1 MGP_C57BL6NJ_G0010266.1 mouse_genomes_project 1 27845006 27845280 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009667.1 MGP_C57BL6NJ_G0007752.1 mouse_genomes_project 1 36228324 36228386 - Mir6897 miRNA miRNA MGP_C57BL6NJ_T0024558.1 MGP_C57BL6NJ_G0017318.1 mouse_genomes_project 1 199004686 199029293 - MGP_C57BL6NJ_P0024558 Lyplal1 protein_coding protein_coding MGP_C57BL6NJ_T0024559.1 MGP_C57BL6NJ_G0017318.1 mouse_genomes_project 1 199005488 199029271 - Lyplal1 protein_coding processed_transcript MGP_C57BL6NJ_T0024679.1 MGP_C57BL6NJ_G0017341.1 mouse_genomes_project 1 204512663 204528129 - MGP_C57BL6NJ_P0024679 Atf3 protein_coding protein_coding MGP_C57BL6NJ_T0024680.1 MGP_C57BL6NJ_G0017341.1 mouse_genomes_project 1 204512663 204563744 - MGP_C57BL6NJ_P0024680 Atf3 protein_coding protein_coding MGP_C57BL6NJ_T0024681.1 MGP_C57BL6NJ_G0017341.1 mouse_genomes_project 1 204513792 204527897 - Atf3 protein_coding processed_transcript MGP_C57BL6NJ_T0000885.1 MGP_C57BL6NJ_G0000799.1 mouse_genomes_project 1 189264032 189265333 - TEC TEC MGP_C57BL6NJ_T0005907.1 MGP_C57BL6NJ_G0004956.1 mouse_genomes_project 1 63222196 63247116 + 2310016D23Rik lincRNA lincRNA MGP_C57BL6NJ_T0000857.1 MGP_C57BL6NJ_G0000771.1 mouse_genomes_project 1 174356613 174358883 - TEC TEC MGP_C57BL6NJ_T0019476.1 MGP_C57BL6NJ_G0016255.1 mouse_genomes_project 1 16387157 16416618 - Crisp4 protein_coding retained_intron MGP_C57BL6NJ_T0019477.1 MGP_C57BL6NJ_G0016255.1 mouse_genomes_project 1 16387157 16416624 - MGP_C57BL6NJ_P0019477 Crisp4 protein_coding protein_coding MGP_C57BL6NJ_T0019478.1 MGP_C57BL6NJ_G0016255.1 mouse_genomes_project 1 16387170 16409024 - MGP_C57BL6NJ_P0019478 Crisp4 protein_coding protein_coding MGP_C57BL6NJ_T0019479.1 MGP_C57BL6NJ_G0016255.1 mouse_genomes_project 1 16387566 16416624 - MGP_C57BL6NJ_P0019479 Crisp4 protein_coding protein_coding MGP_C57BL6NJ_T0022445.1 MGP_C57BL6NJ_G0016858.1 mouse_genomes_project 1 139981462 139993432 + MGP_C57BL6NJ_P0022445 Fam72a protein_coding protein_coding MGP_C57BL6NJ_T0000502.1 MGP_C57BL6NJ_G0000421.1 mouse_genomes_project 1 7815994 7817716 - TEC TEC MGP_C57BL6NJ_T0022306.1 MGP_C57BL6NJ_G0016827.1 mouse_genomes_project 1 135963018 135987850 - MGP_C57BL6NJ_P0022306 Map3k19 protein_coding protein_coding MGP_C57BL6NJ_T0022307.1 MGP_C57BL6NJ_G0016827.1 mouse_genomes_project 1 135963027 135987850 - MGP_C57BL6NJ_P0022307 Map3k19 protein_coding protein_coding MGP_C57BL6NJ_T0022308.1 MGP_C57BL6NJ_G0016827.1 mouse_genomes_project 1 135963027 135987850 - MGP_C57BL6NJ_P0022308 Map3k19 protein_coding protein_coding MGP_C57BL6NJ_T0022309.1 MGP_C57BL6NJ_G0016827.1 mouse_genomes_project 1 135963036 136002916 - MGP_C57BL6NJ_P0022309 Map3k19 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022310.1 MGP_C57BL6NJ_G0016827.1 mouse_genomes_project 1 135963036 135987850 - MGP_C57BL6NJ_P0022310 Map3k19 protein_coding protein_coding MGP_C57BL6NJ_T0019970.1 MGP_C57BL6NJ_G0016355.1 mouse_genomes_project 1 40450368 40495106 + MGP_C57BL6NJ_P0019970 Il1r2 protein_coding protein_coding MGP_C57BL6NJ_T0019971.1 MGP_C57BL6NJ_G0016355.1 mouse_genomes_project 1 40463251 40509628 + MGP_C57BL6NJ_P0019971 Il1r2 protein_coding protein_coding MGP_C57BL6NJ_T0019972.1 MGP_C57BL6NJ_G0016355.1 mouse_genomes_project 1 40463345 40509616 + MGP_C57BL6NJ_P0019972 Il1r2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019973.1 MGP_C57BL6NJ_G0016355.1 mouse_genomes_project 1 40464538 40485406 + MGP_C57BL6NJ_P0019973 Il1r2 protein_coding protein_coding MGP_C57BL6NJ_T0021763.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96478102 96503129 - MGP_C57BL6NJ_P0021763 Ilkap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021764.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96478106 96488821 - MGP_C57BL6NJ_P0021764 Ilkap protein_coding protein_coding MGP_C57BL6NJ_T0021765.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480072 96503212 - MGP_C57BL6NJ_P0021765 Ilkap protein_coding protein_coding MGP_C57BL6NJ_T0021766.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480073 96503184 - Ilkap protein_coding retained_intron MGP_C57BL6NJ_T0021767.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480200 96488768 - MGP_C57BL6NJ_P0021767 Ilkap protein_coding protein_coding MGP_C57BL6NJ_T0021768.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480252 96483159 - Ilkap protein_coding retained_intron MGP_C57BL6NJ_T0021769.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480295 96503222 - MGP_C57BL6NJ_P0021769 Ilkap protein_coding protein_coding MGP_C57BL6NJ_T0021770.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96480296 96503230 - MGP_C57BL6NJ_P0021770 Ilkap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021771.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96485233 96503244 - Ilkap protein_coding processed_transcript MGP_C57BL6NJ_T0021772.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96488819 96503214 - MGP_C57BL6NJ_P0021772 Ilkap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021773.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96489449 96492999 - Ilkap protein_coding retained_intron MGP_C57BL6NJ_T0021774.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96489538 96503207 - MGP_C57BL6NJ_P0021774 Ilkap protein_coding protein_coding MGP_C57BL6NJ_T0021775.1 MGP_C57BL6NJ_G0016704.1 mouse_genomes_project 1 96494428 96503223 - Ilkap protein_coding retained_intron MGP_C57BL6NJ_T0019419.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14190967 14193713 - Rpl7 protein_coding processed_transcript MGP_C57BL6NJ_T0019420.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14190967 14196285 - MGP_C57BL6NJ_P0019420 Rpl7 protein_coding protein_coding MGP_C57BL6NJ_T0019421.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14190978 14196033 - Rpl7 protein_coding retained_intron MGP_C57BL6NJ_T0019422.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14191200 14194479 - Rpl7 protein_coding retained_intron MGP_C57BL6NJ_T0019423.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14191452 14195858 - MGP_C57BL6NJ_P0019423 Rpl7 protein_coding protein_coding MGP_C57BL6NJ_T0019424.1 MGP_C57BL6NJ_G0016244.1 mouse_genomes_project 1 14194121 14196015 - Rpl7 protein_coding retained_intron MGP_C57BL6NJ_T0009686.1 MGP_C57BL6NJ_G0007771.1 mouse_genomes_project 1 66697176 66697240 - Mir6899 miRNA miRNA MGP_C57BL6NJ_T0021390.1 MGP_C57BL6NJ_G0016618.1 mouse_genomes_project 1 88688643 89008374 - MGP_C57BL6NJ_P0021390 Dner protein_coding protein_coding MGP_C57BL6NJ_T0021391.1 MGP_C57BL6NJ_G0016618.1 mouse_genomes_project 1 88851582 89008172 - Dner protein_coding retained_intron MGP_C57BL6NJ_T0021392.1 MGP_C57BL6NJ_G0016618.1 mouse_genomes_project 1 88887561 88949116 - MGP_C57BL6NJ_P0021392 Dner protein_coding protein_coding MGP_C57BL6NJ_T0021393.1 MGP_C57BL6NJ_G0016618.1 mouse_genomes_project 1 88889850 88932420 - MGP_C57BL6NJ_P0021393 Dner protein_coding protein_coding MGP_C57BL6NJ_T0020904.1 MGP_C57BL6NJ_G0016532.1 mouse_genomes_project 1 77644793 77652771 + MGP_C57BL6NJ_P0020904 Cxcr2 protein_coding protein_coding MGP_C57BL6NJ_T0020905.1 MGP_C57BL6NJ_G0016532.1 mouse_genomes_project 1 77644795 77653407 + MGP_C57BL6NJ_P0020905 Cxcr2 protein_coding protein_coding MGP_C57BL6NJ_T0012528.1 MGP_C57BL6NJ_G0010573.1 mouse_genomes_project 1 131545909 131547102 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020860.1 MGP_C57BL6NJ_G0016521.1 mouse_genomes_project 1 75603001 75623347 + MGP_C57BL6NJ_P0020860 Tmem169 protein_coding protein_coding MGP_C57BL6NJ_T0020861.1 MGP_C57BL6NJ_G0016521.1 mouse_genomes_project 1 75603027 75621016 + MGP_C57BL6NJ_P0020861 Tmem169 protein_coding protein_coding MGP_C57BL6NJ_T0020622.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65715908 65717274 - Ndufs1 protein_coding retained_intron MGP_C57BL6NJ_T0020623.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65715908 65752960 - MGP_C57BL6NJ_P0020623 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020624.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65715916 65721907 - Ndufs1 protein_coding retained_intron MGP_C57BL6NJ_T0020625.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65716001 65721575 - MGP_C57BL6NJ_P0020625 Ndufs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020626.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65716047 65752870 - MGP_C57BL6NJ_P0020626 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020627.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65724386 65752801 - MGP_C57BL6NJ_P0020627 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020628.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65724564 65727155 - Ndufs1 protein_coding retained_intron MGP_C57BL6NJ_T0020629.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65730995 65752807 - Ndufs1 protein_coding retained_intron MGP_C57BL6NJ_T0020630.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65734780 65752805 - Ndufs1 protein_coding retained_intron MGP_C57BL6NJ_T0020631.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65739716 65752828 - MGP_C57BL6NJ_P0020631 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020632.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65740898 65752804 - MGP_C57BL6NJ_P0020632 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020633.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65745039 65752931 - MGP_C57BL6NJ_P0020633 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0020634.1 MGP_C57BL6NJ_G0016476.1 mouse_genomes_project 1 65746639 65752971 - MGP_C57BL6NJ_P0020634 Ndufs1 protein_coding protein_coding MGP_C57BL6NJ_T0017511.1 MGP_C57BL6NJ_G0015509.1 mouse_genomes_project 1 148027138 148030454 + Gm37423 processed_transcript retained_intron MGP_C57BL6NJ_T0012459.1 MGP_C57BL6NJ_G0010504.1 mouse_genomes_project 1 107337666 107338371 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019177.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1901331 1920191 - MGP_C57BL6NJ_P0019177 Mrpl15 protein_coding protein_coding MGP_C57BL6NJ_T0019178.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1901336 1920220 - MGP_C57BL6NJ_P0019178 Mrpl15 protein_coding protein_coding MGP_C57BL6NJ_T0019179.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1902561 1920179 - MGP_C57BL6NJ_P0019179 Mrpl15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019180.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1904502 1920220 - Mrpl15 protein_coding processed_transcript MGP_C57BL6NJ_T0019181.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1909382 1917818 - Mrpl15 protein_coding retained_intron MGP_C57BL6NJ_T0019182.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1910636 1920220 - MGP_C57BL6NJ_P0019182 Mrpl15 protein_coding protein_coding MGP_C57BL6NJ_T0019183.1 MGP_C57BL6NJ_G0016200.1 mouse_genomes_project 1 1916823 1920173 - Mrpl15 protein_coding retained_intron MGP_C57BL6NJ_T0021536.1 MGP_C57BL6NJ_G0016652.1 mouse_genomes_project 1 91859240 91864333 + MGP_C57BL6NJ_P0021536 Prss56 protein_coding protein_coding MGP_C57BL6NJ_T0012398.1 MGP_C57BL6NJ_G0010443.1 mouse_genomes_project 1 84365589 84367671 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003016.1 MGP_C57BL6NJ_G0002836.1 mouse_genomes_project 1 125774279 125774897 - 2900060B14Rik antisense antisense MGP_C57BL6NJ_T0003017.1 MGP_C57BL6NJ_G0002836.1 mouse_genomes_project 1 125774299 125774377 - 2900060B14Rik antisense antisense MGP_C57BL6NJ_T0006060.1 MGP_C57BL6NJ_G0005077.1 mouse_genomes_project 1 139149160 139183438 + lincRNA lincRNA MGP_C57BL6NJ_T0021041.1 MGP_C57BL6NJ_G0016560.1 mouse_genomes_project 1 78526946 78621940 - MGP_C57BL6NJ_P0021041 Nhej1 protein_coding protein_coding MGP_C57BL6NJ_T0021042.1 MGP_C57BL6NJ_G0016560.1 mouse_genomes_project 1 78527501 78638056 - MGP_C57BL6NJ_P0021042 Nhej1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021043.1 MGP_C57BL6NJ_G0016560.1 mouse_genomes_project 1 78637926 78637991 - Nhej1 protein_coding processed_transcript MGP_C57BL6NJ_T0003099.1 MGP_C57BL6NJ_G0002899.1 mouse_genomes_project 1 183641601 183654355 - Gm37065 antisense antisense MGP_C57BL6NJ_T0003100.1 MGP_C57BL6NJ_G0002899.1 mouse_genomes_project 1 183645111 183654323 - Gm37065 antisense antisense MGP_C57BL6NJ_T0003101.1 MGP_C57BL6NJ_G0002899.1 mouse_genomes_project 1 183645125 183654307 - Gm37065 antisense antisense MGP_C57BL6NJ_T0000779.1 MGP_C57BL6NJ_G0000694.1 mouse_genomes_project 1 146900457 146904325 + TEC TEC MGP_C57BL6NJ_T0000645.1 MGP_C57BL6NJ_G0000561.1 mouse_genomes_project 1 73693995 73699832 - TEC TEC MGP_C57BL6NJ_T0006198.1 MGP_C57BL6NJ_G0005185.1 mouse_genomes_project 1 198219615 198224069 - 4930532G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006199.1 MGP_C57BL6NJ_G0005185.1 mouse_genomes_project 1 198222612 198224069 - 4930532G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0012186.1 MGP_C57BL6NJ_G0010231.1 mouse_genomes_project 1 15456845 15457224 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012387.1 MGP_C57BL6NJ_G0010432.1 mouse_genomes_project 1 79109606 79110098 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012548.1 MGP_C57BL6NJ_G0010593.1 mouse_genomes_project 1 145684163 145684622 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002940.1 MGP_C57BL6NJ_G0002779.1 mouse_genomes_project 1 41150728 41156924 - Gm37623 antisense antisense MGP_C57BL6NJ_T0020232.1 MGP_C57BL6NJ_G0016404.1 mouse_genomes_project 1 54789852 54796292 + MGP_C57BL6NJ_P0020232 Mstn protein_coding protein_coding MGP_C57BL6NJ_T0020233.1 MGP_C57BL6NJ_G0016404.1 mouse_genomes_project 1 54789869 54796258 + MGP_C57BL6NJ_P0020233 Mstn protein_coding protein_coding MGP_C57BL6NJ_T0000856.1 MGP_C57BL6NJ_G0000770.1 mouse_genomes_project 1 174140567 174142550 + TEC TEC MGP_C57BL6NJ_T0019585.1 MGP_C57BL6NJ_G0016284.1 mouse_genomes_project 1 25736566 25748250 - MGP_C57BL6NJ_P0019585 4931408C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0102664.1 MGP_C57BL6NJ_G0040459.1 mouse_genomes_project 1 102840702 102994712 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024569.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200039919 200218382 - MGP_C57BL6NJ_P0024569 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024570.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200043678 200218363 - MGP_C57BL6NJ_P0024570 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024571.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200109425 200143704 - MGP_C57BL6NJ_P0024571 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024572.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200114204 200218354 - MGP_C57BL6NJ_P0024572 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024573.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200136092 200143897 - MGP_C57BL6NJ_P0024573 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024574.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200136092 200218338 - MGP_C57BL6NJ_P0024574 Spata17 protein_coding protein_coding MGP_C57BL6NJ_T0024575.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200136099 200143884 - Spata17 protein_coding processed_transcript MGP_C57BL6NJ_T0024576.1 MGP_C57BL6NJ_G0017322.1 mouse_genomes_project 1 200190945 200218363 - Spata17 protein_coding processed_transcript MGP_C57BL6NJ_T0000732.1 MGP_C57BL6NJ_G0000648.1 mouse_genomes_project 1 131232010 131233505 - TEC TEC MGP_C57BL6NJ_T0006025.1 MGP_C57BL6NJ_G0005051.1 mouse_genomes_project 1 114349873 114380448 + D830032E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006026.1 MGP_C57BL6NJ_G0005051.1 mouse_genomes_project 1 114349899 114380461 + D830032E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006027.1 MGP_C57BL6NJ_G0005051.1 mouse_genomes_project 1 114364266 114468697 + D830032E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0020356.1 MGP_C57BL6NJ_G0016432.1 mouse_genomes_project 1 59589980 59602041 + MGP_C57BL6NJ_P0020356 9430016H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0009691.1 MGP_C57BL6NJ_G0007776.1 mouse_genomes_project 1 77907844 77907929 + Mir26b miRNA miRNA MGP_C57BL6NJ_T0011516.1 MGP_C57BL6NJ_G0009601.1 mouse_genomes_project 1 176718717 176718968 - Gm23599 misc_RNA misc_RNA MGP_C57BL6NJ_T0102679.1 MGP_C57BL6NJ_G0040474.1 mouse_genomes_project 1 139048853 139064480 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005834.1 MGP_C57BL6NJ_G0004907.1 mouse_genomes_project 1 34196105 34196980 - Gm37958 lincRNA lincRNA MGP_C57BL6NJ_T0002955.1 MGP_C57BL6NJ_G0002792.1 mouse_genomes_project 1 61283280 61330252 + Gm29018 antisense antisense MGP_C57BL6NJ_T0002956.1 MGP_C57BL6NJ_G0002792.1 mouse_genomes_project 1 61305881 61307733 + Gm29018 antisense antisense MGP_C57BL6NJ_T0020379.1 MGP_C57BL6NJ_G0016435.1 mouse_genomes_project 1 60193196 60225898 + MGP_C57BL6NJ_P0020379 Sgol2a protein_coding protein_coding MGP_C57BL6NJ_T0020380.1 MGP_C57BL6NJ_G0016435.1 mouse_genomes_project 1 60222714 60225897 + Sgol2a protein_coding retained_intron MGP_C57BL6NJ_T0024246.1 MGP_C57BL6NJ_G0017252.1 mouse_genomes_project 1 190226613 190529436 + MGP_C57BL6NJ_P0024246 Desi2 protein_coding protein_coding MGP_C57BL6NJ_T0024247.1 MGP_C57BL6NJ_G0017252.1 mouse_genomes_project 1 190460293 190530999 + MGP_C57BL6NJ_P0024247 Desi2 protein_coding protein_coding MGP_C57BL6NJ_T0024248.1 MGP_C57BL6NJ_G0017252.1 mouse_genomes_project 1 190460408 190537279 + MGP_C57BL6NJ_P0024248 Desi2 protein_coding protein_coding MGP_C57BL6NJ_T0024249.1 MGP_C57BL6NJ_G0017252.1 mouse_genomes_project 1 190536080 190537273 + MGP_C57BL6NJ_P0024249 Desi2 protein_coding protein_coding MGP_C57BL6NJ_T0009740.1 MGP_C57BL6NJ_G0007825.1 mouse_genomes_project 1 179920239 179920359 + Mir6348 miRNA miRNA MGP_C57BL6NJ_T0012496.1 MGP_C57BL6NJ_G0010541.1 mouse_genomes_project 1 119784797 119786187 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021204.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79011279 79019233 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021209.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79017822 79039818 - MGP_C57BL6NJ_P0021209 Obsl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021210.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79017824 79039955 - MGP_C57BL6NJ_P0021210 Obsl1 protein_coding protein_coding MGP_C57BL6NJ_T0021211.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79018850 79019802 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021212.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79019222 79020078 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021213.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79022533 79039235 - MGP_C57BL6NJ_P0021213 Obsl1 protein_coding protein_coding MGP_C57BL6NJ_T0021214.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79022848 79025067 - MGP_C57BL6NJ_P0021214 Obsl1 protein_coding protein_coding MGP_C57BL6NJ_T0021215.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79022968 79023811 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021216.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79023357 79024631 - Obsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0021217.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79024394 79025041 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021218.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79029923 79039955 - MGP_C57BL6NJ_P0021218 Obsl1 protein_coding protein_coding MGP_C57BL6NJ_T0021219.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79029924 79037274 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021220.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79035259 79040046 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021221.1 MGP_C57BL6NJ_G0016581.1 mouse_genomes_project 1 79035259 79039955 - Obsl1 protein_coding retained_intron MGP_C57BL6NJ_T0021418.1 MGP_C57BL6NJ_G0016622.1 mouse_genomes_project 1 89355394 89356061 + MGP_C57BL6NJ_P0021418 G530012D18Rik protein_coding protein_coding MGP_C57BL6NJ_T0021969.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99099990 99101540 + MGP_C57BL6NJ_P0021969 D2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0021970.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99100321 99134572 + MGP_C57BL6NJ_P0021970 D2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0021971.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99100355 99134572 + MGP_C57BL6NJ_P0021971 D2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0021972.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99101364 99104977 + D2hgdh protein_coding processed_transcript MGP_C57BL6NJ_T0021973.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99101366 99118870 + MGP_C57BL6NJ_P0021973 D2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0021974.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99101643 99105386 + D2hgdh protein_coding processed_transcript MGP_C57BL6NJ_T0021975.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99104873 99118780 + MGP_C57BL6NJ_P0021975 D2hgdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021976.1 MGP_C57BL6NJ_G0016747.1 mouse_genomes_project 1 99104874 99238465 + MGP_C57BL6NJ_P0021976 D2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0011507.1 MGP_C57BL6NJ_G0009592.1 mouse_genomes_project 1 76830915 76831069 + Gm27315 misc_RNA misc_RNA MGP_C57BL6NJ_T0099541.1 MGP_C57BL6NJ_G0037592.1 mouse_genomes_project 1 43366810 43418572 + Gm20646 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0099542.1 MGP_C57BL6NJ_G0037592.1 mouse_genomes_project 1 43366810 43414749 + Gm20646 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0003066.1 MGP_C57BL6NJ_G0002874.1 mouse_genomes_project 1 167482008 167482367 + 4930439D14Rik antisense antisense MGP_C57BL6NJ_T0020602.1 MGP_C57BL6NJ_G0016472.1 mouse_genomes_project 1 63447501 63464372 + MGP_C57BL6NJ_P0020602 Icos protein_coding protein_coding MGP_C57BL6NJ_T0020603.1 MGP_C57BL6NJ_G0016472.1 mouse_genomes_project 1 63447501 63468881 + MGP_C57BL6NJ_P0020603 Icos protein_coding protein_coding MGP_C57BL6NJ_T0000892.1 MGP_C57BL6NJ_G0000805.1 mouse_genomes_project 1 190630267 190632137 + TEC TEC MGP_C57BL6NJ_T0000924.1 MGP_C57BL6NJ_G0000836.1 mouse_genomes_project 1 204595200 204597043 + TEC TEC MGP_C57BL6NJ_T0102660.1 MGP_C57BL6NJ_G0040455.1 mouse_genomes_project 1 92965179 92965962 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022925.1 MGP_C57BL6NJ_G0016961.1 mouse_genomes_project 1 148939749 149055320 - MGP_C57BL6NJ_P0022925 Cfhr2 protein_coding protein_coding MGP_C57BL6NJ_T0022926.1 MGP_C57BL6NJ_G0016961.1 mouse_genomes_project 1 148946136 149055332 - MGP_C57BL6NJ_P0022926 Cfhr2 protein_coding protein_coding MGP_C57BL6NJ_T0099235.1 MGP_C57BL6NJ_G0037299.1 mouse_genomes_project 1 92456640 92456912 + Gm25395 scaRNA scaRNA MGP_C57BL6NJ_T0023422.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171938187 171971185 - MGP_C57BL6NJ_P0023422 Dars2 protein_coding protein_coding MGP_C57BL6NJ_T0023423.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171938776 171971169 - Dars2 protein_coding retained_intron MGP_C57BL6NJ_T0023424.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171939085 171946219 - Dars2 protein_coding processed_transcript MGP_C57BL6NJ_T0023425.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171939091 171971183 - Dars2 protein_coding retained_intron MGP_C57BL6NJ_T0023426.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171944259 171971134 - Dars2 protein_coding retained_intron MGP_C57BL6NJ_T0023427.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171962980 171964011 - Dars2 protein_coding retained_intron MGP_C57BL6NJ_T0023428.1 MGP_C57BL6NJ_G0017050.1 mouse_genomes_project 1 171963339 171971157 - Dars2 protein_coding processed_transcript MGP_C57BL6NJ_T0000902.1 MGP_C57BL6NJ_G0000815.1 mouse_genomes_project 1 194651559 194653784 - TEC TEC MGP_C57BL6NJ_T0012624.1 MGP_C57BL6NJ_G0010669.1 mouse_genomes_project 1 178524690 178525099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012130.1 MGP_C57BL6NJ_G0010175.1 mouse_genomes_project 1 1804069 1805541 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012418.1 MGP_C57BL6NJ_G0010463.1 mouse_genomes_project 1 92187623 92187746 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022672.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143097832 143100264 + Cyb5r1 protein_coding processed_transcript MGP_C57BL6NJ_T0022673.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098054 143104014 + MGP_C57BL6NJ_P0022673 Cyb5r1 protein_coding protein_coding MGP_C57BL6NJ_T0022674.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098054 143104010 + MGP_C57BL6NJ_P0022674 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022675.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098268 143099876 + Cyb5r1 protein_coding processed_transcript MGP_C57BL6NJ_T0022676.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098276 143099868 + Cyb5r1 protein_coding processed_transcript MGP_C57BL6NJ_T0022677.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098277 143101939 + MGP_C57BL6NJ_P0022677 Cyb5r1 protein_coding protein_coding MGP_C57BL6NJ_T0022678.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098293 143101140 + Cyb5r1 protein_coding retained_intron MGP_C57BL6NJ_T0022679.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098301 143102273 + Cyb5r1 protein_coding retained_intron MGP_C57BL6NJ_T0022680.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098586 143103243 + MGP_C57BL6NJ_P0022680 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022681.1 MGP_C57BL6NJ_G0016910.1 mouse_genomes_project 1 143098586 143099941 + MGP_C57BL6NJ_P0022681 Cyb5r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022224.1 MGP_C57BL6NJ_G0016809.1 mouse_genomes_project 1 127659927 127736230 - MGP_C57BL6NJ_P0022224 Steap3 protein_coding protein_coding MGP_C57BL6NJ_T0022225.1 MGP_C57BL6NJ_G0016809.1 mouse_genomes_project 1 127693472 127742057 - MGP_C57BL6NJ_P0022225 Steap3 protein_coding protein_coding MGP_C57BL6NJ_T0022226.1 MGP_C57BL6NJ_G0016809.1 mouse_genomes_project 1 127695718 127741398 - MGP_C57BL6NJ_P0022226 Steap3 protein_coding protein_coding MGP_C57BL6NJ_T0022227.1 MGP_C57BL6NJ_G0016809.1 mouse_genomes_project 1 127695734 127741205 - MGP_C57BL6NJ_P0022227 Steap3 protein_coding protein_coding MGP_C57BL6NJ_T0012491.1 MGP_C57BL6NJ_G0010536.1 mouse_genomes_project 1 118808978 118813185 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006119.1 MGP_C57BL6NJ_G0005125.1 mouse_genomes_project 1 170834255 170836886 - Gm37294 lincRNA lincRNA MGP_C57BL6NJ_T0012182.1 MGP_C57BL6NJ_G0010227.1 mouse_genomes_project 1 14126237 14126790 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102122.1 MGP_C57BL6NJ_G0040168.1 mouse_genomes_project 1 36912847 36913157 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102123.1 MGP_C57BL6NJ_G0040168.1 mouse_genomes_project 1 36913002 36913859 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0099572.1 MGP_C57BL6NJ_G0037618.1 mouse_genomes_project 1 7614202 7614306 - Gm24674 snRNA snRNA MGP_C57BL6NJ_T0020208.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54376580 54451055 - MGP_C57BL6NJ_P0020208 Mfsd6 protein_coding protein_coding MGP_C57BL6NJ_T0020209.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54376592 54450431 - MGP_C57BL6NJ_P0020209 Mfsd6 protein_coding protein_coding MGP_C57BL6NJ_T0020210.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54377729 54380593 - Mfsd6 protein_coding retained_intron MGP_C57BL6NJ_T0020211.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54380280 54451055 - MGP_C57BL6NJ_P0020211 Mfsd6 protein_coding protein_coding MGP_C57BL6NJ_T0020212.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54381197 54391597 - Mfsd6 protein_coding processed_transcript MGP_C57BL6NJ_T0020213.1 MGP_C57BL6NJ_G0016400.1 mouse_genomes_project 1 54397868 54450951 - Mfsd6 protein_coding retained_intron MGP_C57BL6NJ_T0005968.1 MGP_C57BL6NJ_G0005001.1 mouse_genomes_project 1 84183859 84187566 + 2310015K22Rik lincRNA lincRNA MGP_C57BL6NJ_T0012571.1 MGP_C57BL6NJ_G0010616.1 mouse_genomes_project 1 158362688 158363455 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021368.1 MGP_C57BL6NJ_G0016614.1 mouse_genomes_project 1 87332458 87334859 + MGP_C57BL6NJ_P0021368 Ccl20 protein_coding protein_coding MGP_C57BL6NJ_T0021369.1 MGP_C57BL6NJ_G0016614.1 mouse_genomes_project 1 87332466 87334860 + MGP_C57BL6NJ_P0021369 Ccl20 protein_coding protein_coding MGP_C57BL6NJ_T0021370.1 MGP_C57BL6NJ_G0016614.1 mouse_genomes_project 1 87332485 87334860 + MGP_C57BL6NJ_P0021370 Ccl20 protein_coding protein_coding MGP_C57BL6NJ_T0000756.1 MGP_C57BL6NJ_G0000672.1 mouse_genomes_project 1 139108334 139110024 - TEC TEC MGP_C57BL6NJ_T0012567.1 MGP_C57BL6NJ_G0010612.1 mouse_genomes_project 1 154605894 154606890 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009709.1 MGP_C57BL6NJ_G0007794.1 mouse_genomes_project 1 98582573 98582637 + Mir6902 miRNA miRNA MGP_C57BL6NJ_T0012474.1 MGP_C57BL6NJ_G0010519.1 mouse_genomes_project 1 113218838 113220445 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024079.1 MGP_C57BL6NJ_G0017196.1 mouse_genomes_project 1 184399567 184405470 - MGP_C57BL6NJ_P0024079 Fcrl6 protein_coding protein_coding MGP_C57BL6NJ_T0024080.1 MGP_C57BL6NJ_G0017196.1 mouse_genomes_project 1 184400505 184405466 - Fcrl6 protein_coding retained_intron MGP_C57BL6NJ_T0024081.1 MGP_C57BL6NJ_G0017196.1 mouse_genomes_project 1 184400944 184405470 - Fcrl6 protein_coding retained_intron MGP_C57BL6NJ_T0005813.1 MGP_C57BL6NJ_G0004887.1 mouse_genomes_project 1 10942655 10952428 + Gm29283 lincRNA lincRNA MGP_C57BL6NJ_T0012589.1 MGP_C57BL6NJ_G0010634.1 mouse_genomes_project 1 163934919 163938404 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006142.1 MGP_C57BL6NJ_G0005142.1 mouse_genomes_project 1 177029119 177030407 - Gm36972 lincRNA lincRNA MGP_C57BL6NJ_T0021651.1 MGP_C57BL6NJ_G0016674.1 mouse_genomes_project 1 92846033 92996654 + MGP_C57BL6NJ_P0021651 protein_coding protein_coding MGP_C57BL6NJ_T0021652.1 MGP_C57BL6NJ_G0016674.1 mouse_genomes_project 1 92846106 92993944 + MGP_C57BL6NJ_P0021652 protein_coding protein_coding MGP_C57BL6NJ_T0000762.1 MGP_C57BL6NJ_G0000678.1 mouse_genomes_project 1 141501991 141503800 - TEC TEC MGP_C57BL6NJ_T0012379.1 MGP_C57BL6NJ_G0010424.1 mouse_genomes_project 1 74680711 74680783 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000918.1 MGP_C57BL6NJ_G0000830.1 mouse_genomes_project 1 200239367 200246839 + TEC TEC MGP_C57BL6NJ_T0012600.1 MGP_C57BL6NJ_G0010645.1 mouse_genomes_project 1 168231182 168231380 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021531.1 MGP_C57BL6NJ_G0016651.1 mouse_genomes_project 1 91823497 91832364 - MGP_C57BL6NJ_P0021531 Ecel1 protein_coding protein_coding MGP_C57BL6NJ_T0021532.1 MGP_C57BL6NJ_G0016651.1 mouse_genomes_project 1 91823500 91830870 - MGP_C57BL6NJ_P0021532 Ecel1 protein_coding protein_coding MGP_C57BL6NJ_T0021533.1 MGP_C57BL6NJ_G0016651.1 mouse_genomes_project 1 91823504 91832008 - MGP_C57BL6NJ_P0021533 Ecel1 protein_coding protein_coding MGP_C57BL6NJ_T0021534.1 MGP_C57BL6NJ_G0016651.1 mouse_genomes_project 1 91823724 91824759 - Ecel1 protein_coding retained_intron MGP_C57BL6NJ_T0021535.1 MGP_C57BL6NJ_G0016651.1 mouse_genomes_project 1 91830865 91831154 - Ecel1 protein_coding processed_transcript MGP_C57BL6NJ_T0023928.1 MGP_C57BL6NJ_G0017160.1 mouse_genomes_project 1 183043963 183046316 - MGP_C57BL6NJ_P0023928 Klhdc9 protein_coding protein_coding MGP_C57BL6NJ_T0005935.1 MGP_C57BL6NJ_G0004978.1 mouse_genomes_project 1 75163821 75190350 - Gm28818 lincRNA lincRNA MGP_C57BL6NJ_T0005936.1 MGP_C57BL6NJ_G0004978.1 mouse_genomes_project 1 75166144 75168388 - Gm28818 lincRNA lincRNA MGP_C57BL6NJ_T0023964.1 MGP_C57BL6NJ_G0017170.1 mouse_genomes_project 1 183347348 183361351 - MGP_C57BL6NJ_P0023964 Slamf7 protein_coding protein_coding MGP_C57BL6NJ_T0023965.1 MGP_C57BL6NJ_G0017170.1 mouse_genomes_project 1 183348141 183361431 - MGP_C57BL6NJ_P0023965 Slamf7 protein_coding protein_coding MGP_C57BL6NJ_T0023966.1 MGP_C57BL6NJ_G0017170.1 mouse_genomes_project 1 183348652 183361351 - MGP_C57BL6NJ_P0023966 Slamf7 protein_coding protein_coding MGP_C57BL6NJ_T0017507.1 MGP_C57BL6NJ_G0015507.1 mouse_genomes_project 1 145254398 145258002 - 9230116N13Rik processed_transcript antisense MGP_C57BL6NJ_T0017508.1 MGP_C57BL6NJ_G0015507.1 mouse_genomes_project 1 145255325 145257977 - 9230116N13Rik processed_transcript retained_intron MGP_C57BL6NJ_T0100872.1 MGP_C57BL6NJ_G0038918.1 mouse_genomes_project 1 62023190 62023277 + Snord70 snoRNA snoRNA MGP_C57BL6NJ_T0009680.1 MGP_C57BL6NJ_G0007765.1 mouse_genomes_project 1 56717729 56717834 + Gm24053 miRNA miRNA MGP_C57BL6NJ_T0099605.1 MGP_C57BL6NJ_G0037651.1 mouse_genomes_project 1 77705284 77705391 + Gm25524 snRNA snRNA MGP_C57BL6NJ_T0022972.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153615503 153622449 - MGP_C57BL6NJ_P0022972 Rgs1 protein_coding protein_coding MGP_C57BL6NJ_T0022973.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153616420 153622263 - Rgs1 protein_coding retained_intron MGP_C57BL6NJ_T0022974.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153617179 153622267 - MGP_C57BL6NJ_P0022974 Rgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022975.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153617802 153622267 - MGP_C57BL6NJ_P0022975 Rgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022976.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153617880 153622265 - MGP_C57BL6NJ_P0022976 Rgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022977.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153617880 153622235 - MGP_C57BL6NJ_P0022977 Rgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022978.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153618670 153622266 - MGP_C57BL6NJ_P0022978 Rgs1 protein_coding protein_coding MGP_C57BL6NJ_T0022979.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153620999 153622265 - Rgs1 protein_coding retained_intron MGP_C57BL6NJ_T0022980.1 MGP_C57BL6NJ_G0016971.1 mouse_genomes_project 1 153621002 153622268 - Rgs1 protein_coding retained_intron MGP_C57BL6NJ_T0099290.1 MGP_C57BL6NJ_G0037354.1 mouse_genomes_project 1 54423698 54426189 - Gm29670 sense_intronic sense_intronic MGP_C57BL6NJ_T0099663.1 MGP_C57BL6NJ_G0037709.1 mouse_genomes_project 1 205181880 205181994 - Gm26203 snRNA snRNA MGP_C57BL6NJ_T0012334.1 MGP_C57BL6NJ_G0010379.1 mouse_genomes_project 1 61441173 61442556 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000621.1 MGP_C57BL6NJ_G0000537.1 mouse_genomes_project 1 64153826 64156562 + TEC TEC MGP_C57BL6NJ_T0012525.1 MGP_C57BL6NJ_G0010570.1 mouse_genomes_project 1 130936983 130937100 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006152.1 MGP_C57BL6NJ_G0005151.1 mouse_genomes_project 1 181693622 181695998 - Gm37502 lincRNA lincRNA MGP_C57BL6NJ_T0012630.1 MGP_C57BL6NJ_G0010675.1 mouse_genomes_project 1 182537321 182537616 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012393.1 MGP_C57BL6NJ_G0010438.1 mouse_genomes_project 1 82827349 82827747 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012477.1 MGP_C57BL6NJ_G0010522.1 mouse_genomes_project 1 114382350 114382949 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020783.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69786131 69807339 - MGP_C57BL6NJ_P0020783 Myl1 protein_coding protein_coding MGP_C57BL6NJ_T0020784.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69786131 69797346 - MGP_C57BL6NJ_P0020784 Myl1 protein_coding protein_coding MGP_C57BL6NJ_T0020785.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69786134 69797063 - MGP_C57BL6NJ_P0020785 Myl1 protein_coding protein_coding MGP_C57BL6NJ_T0020786.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69786859 69797059 - Myl1 protein_coding processed_transcript MGP_C57BL6NJ_T0020787.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69787902 69797042 - MGP_C57BL6NJ_P0020787 Myl1 protein_coding protein_coding MGP_C57BL6NJ_T0020788.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69788458 69807580 - MGP_C57BL6NJ_P0020788 Myl1 protein_coding protein_coding MGP_C57BL6NJ_T0020789.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69791900 69796407 - Myl1 protein_coding retained_intron MGP_C57BL6NJ_T0020790.1 MGP_C57BL6NJ_G0016508.1 mouse_genomes_project 1 69806658 69807600 - Myl1 protein_coding retained_intron MGP_C57BL6NJ_T0000908.1 MGP_C57BL6NJ_G0000820.1 mouse_genomes_project 1 195426273 195428227 + TEC TEC MGP_C57BL6NJ_T0023460.1 MGP_C57BL6NJ_G0017055.1 mouse_genomes_project 1 172313888 172338247 + MGP_C57BL6NJ_P0023460 Tnfsf4 protein_coding protein_coding MGP_C57BL6NJ_T0003064.1 MGP_C57BL6NJ_G0002872.1 mouse_genomes_project 1 166276929 166317868 + Gm37571 antisense antisense MGP_C57BL6NJ_T0020674.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211119 67282038 + MGP_C57BL6NJ_P0020674 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020675.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211271 67287202 + MGP_C57BL6NJ_P0020675 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020676.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211278 67245489 + Creb1 protein_coding retained_intron MGP_C57BL6NJ_T0020677.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211283 67264621 + MGP_C57BL6NJ_P0020677 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020678.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211283 67285600 + MGP_C57BL6NJ_P0020678 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020679.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211293 67288891 + MGP_C57BL6NJ_P0020679 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020680.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211306 67261518 + Creb1 protein_coding processed_transcript MGP_C57BL6NJ_T0020681.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211333 67281810 + MGP_C57BL6NJ_P0020681 Creb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020682.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67211368 67281820 + MGP_C57BL6NJ_P0020682 Creb1 protein_coding protein_coding MGP_C57BL6NJ_T0020683.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67247495 67249137 + Creb1 protein_coding retained_intron MGP_C57BL6NJ_T0020684.1 MGP_C57BL6NJ_G0016486.1 mouse_genomes_project 1 67262792 67265555 + Creb1 protein_coding retained_intron MGP_C57BL6NJ_T0023140.1 MGP_C57BL6NJ_G0017001.1 mouse_genomes_project 1 163805381 163856883 - MGP_C57BL6NJ_P0023140 Npl protein_coding protein_coding MGP_C57BL6NJ_T0023141.1 MGP_C57BL6NJ_G0017001.1 mouse_genomes_project 1 163855259 163856549 - Npl protein_coding retained_intron MGP_C57BL6NJ_T0020539.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62349655 62358135 - Ica1l protein_coding processed_transcript MGP_C57BL6NJ_T0020540.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62356275 62414832 - MGP_C57BL6NJ_P0020540 Ica1l protein_coding protein_coding MGP_C57BL6NJ_T0020541.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62356282 62414867 - MGP_C57BL6NJ_P0020541 Ica1l protein_coding protein_coding MGP_C57BL6NJ_T0020542.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62358331 62395261 - MGP_C57BL6NJ_P0020542 Ica1l protein_coding protein_coding MGP_C57BL6NJ_T0020543.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62382283 62389647 - Ica1l protein_coding retained_intron MGP_C57BL6NJ_T0020544.1 MGP_C57BL6NJ_G0016463.1 mouse_genomes_project 1 62387819 62414929 - Ica1l protein_coding processed_transcript MGP_C57BL6NJ_T0000678.1 MGP_C57BL6NJ_G0000594.1 mouse_genomes_project 1 91203514 91204689 + TEC TEC MGP_C57BL6NJ_T0021255.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82184113 82256416 - MGP_C57BL6NJ_P0021255 Farsb protein_coding protein_coding MGP_C57BL6NJ_T0021256.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82191367 82256454 - MGP_C57BL6NJ_P0021256 Farsb protein_coding protein_coding MGP_C57BL6NJ_T0021257.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82191384 82256419 - MGP_C57BL6NJ_P0021257 Farsb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021258.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82230517 82256416 - MGP_C57BL6NJ_P0021258 Farsb protein_coding protein_coding MGP_C57BL6NJ_T0021259.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82238707 82256352 - Farsb protein_coding processed_transcript MGP_C57BL6NJ_T0021260.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82240091 82256399 - MGP_C57BL6NJ_P0021260 Farsb protein_coding protein_coding MGP_C57BL6NJ_T0021261.1 MGP_C57BL6NJ_G0016589.1 mouse_genomes_project 1 82245388 82256394 - Farsb protein_coding retained_intron MGP_C57BL6NJ_T0012200.1 MGP_C57BL6NJ_G0010245.1 mouse_genomes_project 1 19443159 19444363 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024089.1 MGP_C57BL6NJ_G0017202.1 mouse_genomes_project 1 185004001 185005064 - MGP_C57BL6NJ_P0024089 Olfr1406 protein_coding protein_coding MGP_C57BL6NJ_T0024090.1 MGP_C57BL6NJ_G0017202.1 mouse_genomes_project 1 185004728 185011291 - MGP_C57BL6NJ_P0024090 Olfr1406 protein_coding protein_coding MGP_C57BL6NJ_T0019249.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5822196 6827403 - MGP_C57BL6NJ_P0019249 Sntg1 protein_coding protein_coding MGP_C57BL6NJ_T0019250.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5822196 6826738 - MGP_C57BL6NJ_P0019250 Sntg1 protein_coding protein_coding MGP_C57BL6NJ_T0019251.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5822196 6827029 - MGP_C57BL6NJ_P0019251 Sntg1 protein_coding protein_coding MGP_C57BL6NJ_T0019252.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5823399 6828043 - MGP_C57BL6NJ_P0019252 Sntg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019253.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5823904 5944183 - Sntg1 protein_coding processed_transcript MGP_C57BL6NJ_T0019254.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5824146 5944142 - Sntg1 protein_coding processed_transcript MGP_C57BL6NJ_T0019255.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 5824196 6276958 - MGP_C57BL6NJ_P0019255 Sntg1 protein_coding protein_coding MGP_C57BL6NJ_T0019256.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 6140823 6827447 - MGP_C57BL6NJ_P0019256 Sntg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019257.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 6257110 6827674 - Sntg1 protein_coding retained_intron MGP_C57BL6NJ_T0019259.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 6448651 6451888 - Sntg1 protein_coding retained_intron MGP_C57BL6NJ_T0019260.1 MGP_C57BL6NJ_G0016213.1 mouse_genomes_project 1 6450037 6826401 - Sntg1 protein_coding processed_transcript MGP_C57BL6NJ_T0100865.1 MGP_C57BL6NJ_G0038911.1 mouse_genomes_project 1 44658258 44658383 + Gm26352 snoRNA snoRNA MGP_C57BL6NJ_T0000593.1 MGP_C57BL6NJ_G0000509.1 mouse_genomes_project 1 45349429 45353908 + TEC TEC MGP_C57BL6NJ_T0009678.1 MGP_C57BL6NJ_G0007763.1 mouse_genomes_project 1 55180381 55180506 - Gm25240 miRNA miRNA MGP_C57BL6NJ_T0023780.1 MGP_C57BL6NJ_G0017128.1 mouse_genomes_project 1 181714038 181735505 - MGP_C57BL6NJ_P0023780 Uhmk1 protein_coding protein_coding MGP_C57BL6NJ_T0023781.1 MGP_C57BL6NJ_G0017128.1 mouse_genomes_project 1 181715122 181736011 - MGP_C57BL6NJ_P0023781 Uhmk1 protein_coding protein_coding MGP_C57BL6NJ_T0021980.1 MGP_C57BL6NJ_G0016750.1 mouse_genomes_project 1 99158437 99326731 + MGP_C57BL6NJ_P0021980 protein_coding protein_coding MGP_C57BL6NJ_T0021982.1 MGP_C57BL6NJ_G0016750.1 mouse_genomes_project 1 99301972 99328697 + MGP_C57BL6NJ_P0021982 protein_coding protein_coding MGP_C57BL6NJ_T0002957.1 MGP_C57BL6NJ_G0002793.1 mouse_genomes_project 1 61402002 61404804 + G730003C15Rik antisense antisense MGP_C57BL6NJ_T0002958.1 MGP_C57BL6NJ_G0002793.1 mouse_genomes_project 1 61402002 61404806 + G730003C15Rik antisense antisense MGP_C57BL6NJ_T0099619.1 MGP_C57BL6NJ_G0037665.1 mouse_genomes_project 1 125774770 125774895 - Gm22710 snRNA snRNA MGP_C57BL6NJ_T0100896.1 MGP_C57BL6NJ_G0038942.1 mouse_genomes_project 1 109375876 109376018 - Gm23965 snoRNA snoRNA MGP_C57BL6NJ_T0012569.1 MGP_C57BL6NJ_G0010614.1 mouse_genomes_project 1 155965989 155966590 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000581.1 MGP_C57BL6NJ_G0000497.1 mouse_genomes_project 1 37885745 37887671 + TEC TEC MGP_C57BL6NJ_T0099594.1 MGP_C57BL6NJ_G0037640.1 mouse_genomes_project 1 65895307 65895411 - Gm23448 snRNA snRNA MGP_C57BL6NJ_T0023095.1 MGP_C57BL6NJ_G0016992.1 mouse_genomes_project 1 162973956 162980883 + MGP_C57BL6NJ_P0023095 Apobec4 protein_coding protein_coding MGP_C57BL6NJ_T0009683.1 MGP_C57BL6NJ_G0007768.1 mouse_genomes_project 1 65737732 65737821 + Gm24557 miRNA miRNA MGP_C57BL6NJ_T0024077.1 MGP_C57BL6NJ_G0017195.1 mouse_genomes_project 1 184381543 184391715 - MGP_C57BL6NJ_P0024077 Slamf8 protein_coding protein_coding MGP_C57BL6NJ_T0024078.1 MGP_C57BL6NJ_G0017195.1 mouse_genomes_project 1 184390125 184391596 - Slamf8 protein_coding retained_intron MGP_C57BL6NJ_T0000931.1 MGP_C57BL6NJ_G0000842.1 mouse_genomes_project 1 206742871 206745444 + TEC TEC MGP_C57BL6NJ_T0012199.1 MGP_C57BL6NJ_G0010244.1 mouse_genomes_project 1 19313608 19314794 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012262.1 MGP_C57BL6NJ_G0010307.1 mouse_genomes_project 1 39204006 39204778 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012411.1 MGP_C57BL6NJ_G0010456.1 mouse_genomes_project 1 87546602 87547390 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000519.1 MGP_C57BL6NJ_G0000438.1 mouse_genomes_project 1 12764146 12768467 + TEC TEC MGP_C57BL6NJ_T0021027.1 MGP_C57BL6NJ_G0016553.1 mouse_genomes_project 1 78317580 78333912 + MGP_C57BL6NJ_P0021027 Wnt6 protein_coding protein_coding MGP_C57BL6NJ_T0021028.1 MGP_C57BL6NJ_G0016553.1 mouse_genomes_project 1 78331028 78333192 + Wnt6 protein_coding retained_intron MGP_C57BL6NJ_T0011500.1 MGP_C57BL6NJ_G0009585.1 mouse_genomes_project 1 38217187 38217424 + Gm23409 misc_RNA misc_RNA MGP_C57BL6NJ_T0019472.1 MGP_C57BL6NJ_G0016253.1 mouse_genomes_project 1 15837767 15868047 + MGP_C57BL6NJ_P0019472 Pi15 protein_coding protein_coding MGP_C57BL6NJ_T0023558.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175035934 175061556 + MGP_C57BL6NJ_P0023558 Scyl3 protein_coding protein_coding MGP_C57BL6NJ_T0023559.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175036595 175061980 + MGP_C57BL6NJ_P0023559 Scyl3 protein_coding protein_coding MGP_C57BL6NJ_T0023560.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175036620 175061964 + MGP_C57BL6NJ_P0023560 Scyl3 protein_coding protein_coding MGP_C57BL6NJ_T0023561.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175036635 175061963 + MGP_C57BL6NJ_P0023561 Scyl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023562.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175047945 175061968 + MGP_C57BL6NJ_P0023562 Scyl3 protein_coding protein_coding MGP_C57BL6NJ_T0023563.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175050601 175051675 + Scyl3 protein_coding processed_transcript MGP_C57BL6NJ_T0023565.1 MGP_C57BL6NJ_G0017077.1 mouse_genomes_project 1 175058043 175060656 + Scyl3 protein_coding retained_intron MGP_C57BL6NJ_T0023989.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183819409 183837671 - MGP_C57BL6NJ_P0023989 Ncstn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023990.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183819409 183837671 - MGP_C57BL6NJ_P0023990 Ncstn protein_coding protein_coding MGP_C57BL6NJ_T0023991.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183819409 183837671 - MGP_C57BL6NJ_P0023991 Ncstn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023992.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183820096 183821461 - Ncstn protein_coding retained_intron MGP_C57BL6NJ_T0023993.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183821266 183824665 - Ncstn protein_coding retained_intron MGP_C57BL6NJ_T0023994.1 MGP_C57BL6NJ_G0017178.1 mouse_genomes_project 1 183835574 183837671 - Ncstn protein_coding retained_intron MGP_C57BL6NJ_T0024714.1 MGP_C57BL6NJ_G0017350.1 mouse_genomes_project 1 205416332 205427246 + MGP_C57BL6NJ_P0024714 Rd3 protein_coding protein_coding MGP_C57BL6NJ_T0024715.1 MGP_C57BL6NJ_G0017350.1 mouse_genomes_project 1 205416335 205425355 + MGP_C57BL6NJ_P0024715 Rd3 protein_coding protein_coding MGP_C57BL6NJ_T0024716.1 MGP_C57BL6NJ_G0017350.1 mouse_genomes_project 1 205417213 205425354 + MGP_C57BL6NJ_P0024716 Rd3 protein_coding protein_coding MGP_C57BL6NJ_T0024717.1 MGP_C57BL6NJ_G0017350.1 mouse_genomes_project 1 205423132 205425355 + Rd3 protein_coding retained_intron MGP_C57BL6NJ_T0024775.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206629541 206655421 - MGP_C57BL6NJ_P0024775 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024776.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206629582 206655634 - MGP_C57BL6NJ_P0024776 Traf3ip3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024777.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206629592 206655634 - MGP_C57BL6NJ_P0024777 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024778.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206633325 206638907 - MGP_C57BL6NJ_P0024778 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024779.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206633329 206651909 - Traf3ip3 protein_coding retained_intron MGP_C57BL6NJ_T0024780.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206638662 206648389 - MGP_C57BL6NJ_P0024780 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024781.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206638751 206641229 - MGP_C57BL6NJ_P0024781 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024782.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206639278 206655542 - Traf3ip3 protein_coding retained_intron MGP_C57BL6NJ_T0024783.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206648454 206655603 - Traf3ip3 protein_coding retained_intron MGP_C57BL6NJ_T0024784.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206648617 206652058 - MGP_C57BL6NJ_P0024784 Traf3ip3 protein_coding protein_coding MGP_C57BL6NJ_T0024785.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206652114 206655585 - Traf3ip3 protein_coding processed_transcript MGP_C57BL6NJ_T0024786.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206652121 206655589 - Traf3ip3 protein_coding processed_transcript MGP_C57BL6NJ_T0024787.1 MGP_C57BL6NJ_G0017360.1 mouse_genomes_project 1 206654982 206655790 - Traf3ip3 protein_coding processed_transcript MGP_C57BL6NJ_T0021967.1 MGP_C57BL6NJ_G0016746.1 mouse_genomes_project 1 99076809 99097183 + MGP_C57BL6NJ_P0021967 Ing5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021968.1 MGP_C57BL6NJ_G0016746.1 mouse_genomes_project 1 99076829 99097188 + MGP_C57BL6NJ_P0021968 Ing5 protein_coding protein_coding MGP_C57BL6NJ_T0005981.1 MGP_C57BL6NJ_G0005012.1 mouse_genomes_project 1 93357140 93363001 + Gm28888 lincRNA lincRNA MGP_C57BL6NJ_T0009733.1 MGP_C57BL6NJ_G0007818.1 mouse_genomes_project 1 171112887 171112996 - Mir1927 miRNA miRNA MGP_C57BL6NJ_T0011523.1 MGP_C57BL6NJ_G0009608.1 mouse_genomes_project 1 208402626 208402920 + Gm23885 misc_RNA misc_RNA MGP_C57BL6NJ_T0003108.1 MGP_C57BL6NJ_G0002906.1 mouse_genomes_project 1 189636339 189637086 - Gm26801 antisense antisense MGP_C57BL6NJ_T0003109.1 MGP_C57BL6NJ_G0002906.1 mouse_genomes_project 1 189637048 189650462 - Gm26801 antisense antisense MGP_C57BL6NJ_T0012160.1 MGP_C57BL6NJ_G0010205.1 mouse_genomes_project 1 6782283 6782801 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021008.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78195076 78238230 + MGP_C57BL6NJ_P0021008 Ttll4 protein_coding protein_coding MGP_C57BL6NJ_T0021009.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78195081 78219877 + MGP_C57BL6NJ_P0021009 Ttll4 protein_coding protein_coding MGP_C57BL6NJ_T0021010.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78195148 78206592 + Ttll4 protein_coding retained_intron MGP_C57BL6NJ_T0021011.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78195148 78215119 + MGP_C57BL6NJ_P0021011 Ttll4 protein_coding protein_coding MGP_C57BL6NJ_T0021012.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78212225 78232477 + MGP_C57BL6NJ_P0021012 Ttll4 protein_coding protein_coding MGP_C57BL6NJ_T0021013.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78219845 78223148 + Ttll4 protein_coding processed_transcript MGP_C57BL6NJ_T0021014.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78220475 78223170 + Ttll4 protein_coding processed_transcript MGP_C57BL6NJ_T0021015.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78223942 78225198 + Ttll4 protein_coding retained_intron MGP_C57BL6NJ_T0021016.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78224592 78236332 + Ttll4 protein_coding processed_transcript MGP_C57BL6NJ_T0021017.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78229712 78234378 + Ttll4 protein_coding retained_intron MGP_C57BL6NJ_T0021018.1 MGP_C57BL6NJ_G0016550.1 mouse_genomes_project 1 78230233 78232341 + Ttll4 protein_coding processed_transcript MGP_C57BL6NJ_T0005974.1 MGP_C57BL6NJ_G0005006.1 mouse_genomes_project 1 87909084 88197908 - 4933436I20Rik lincRNA lincRNA MGP_C57BL6NJ_T0005975.1 MGP_C57BL6NJ_G0005006.1 mouse_genomes_project 1 88108224 88197949 - 4933436I20Rik lincRNA lincRNA MGP_C57BL6NJ_T0012326.1 MGP_C57BL6NJ_G0010371.1 mouse_genomes_project 1 59471300 59472277 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098921.1 MGP_C57BL6NJ_G0036985.1 mouse_genomes_project 1 26082591 26082710 - n-R5s209 rRNA rRNA MGP_C57BL6NJ_T0009670.1 MGP_C57BL6NJ_G0007755.1 mouse_genomes_project 1 36797811 36797886 + Gm24133 miRNA miRNA MGP_C57BL6NJ_T0019690.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34602395 34749920 + MGP_C57BL6NJ_P0019690 protein_coding protein_coding MGP_C57BL6NJ_T0019691.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34660396 34749010 + MGP_C57BL6NJ_P0019691 protein_coding protein_coding MGP_C57BL6NJ_T0019692.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34682114 34744325 + MGP_C57BL6NJ_P0019692 protein_coding protein_coding MGP_C57BL6NJ_T0019693.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34738894 34750490 + MGP_C57BL6NJ_P0019693 protein_coding protein_coding MGP_C57BL6NJ_T0019694.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34738911 34746399 + protein_coding retained_intron MGP_C57BL6NJ_T0019695.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34738912 34743879 + protein_coding retained_intron MGP_C57BL6NJ_T0019696.1 MGP_C57BL6NJ_G0016305.1 mouse_genomes_project 1 34738931 34746092 + MGP_C57BL6NJ_P0019696 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023060.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161591800 161612009 - MGP_C57BL6NJ_P0023060 Rnf2 protein_coding protein_coding MGP_C57BL6NJ_T0023061.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161603896 161638285 - MGP_C57BL6NJ_P0023061 Rnf2 protein_coding protein_coding MGP_C57BL6NJ_T0023062.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161603897 161638429 - MGP_C57BL6NJ_P0023062 Rnf2 protein_coding protein_coding MGP_C57BL6NJ_T0023063.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161605613 161638307 - MGP_C57BL6NJ_P0023063 Rnf2 protein_coding protein_coding MGP_C57BL6NJ_T0023064.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161605645 161606523 - Rnf2 protein_coding retained_intron MGP_C57BL6NJ_T0023065.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161605810 161609966 - Rnf2 protein_coding processed_transcript MGP_C57BL6NJ_T0023066.1 MGP_C57BL6NJ_G0016985.1 mouse_genomes_project 1 161612747 161638268 - MGP_C57BL6NJ_P0023066 Rnf2 protein_coding protein_coding MGP_C57BL6NJ_T0021659.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93088346 93116340 - MGP_C57BL6NJ_P0021659 Hjurp protein_coding protein_coding MGP_C57BL6NJ_T0021660.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93094148 93116688 - MGP_C57BL6NJ_P0021660 Hjurp protein_coding protein_coding MGP_C57BL6NJ_T0021661.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93096503 93116612 - MGP_C57BL6NJ_P0021661 Hjurp protein_coding protein_coding MGP_C57BL6NJ_T0021662.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93096852 93116304 - MGP_C57BL6NJ_P0021662 Hjurp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021663.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93098731 93104611 - MGP_C57BL6NJ_P0021663 Hjurp protein_coding protein_coding MGP_C57BL6NJ_T0021664.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93104555 93109912 - Hjurp protein_coding retained_intron MGP_C57BL6NJ_T0021665.1 MGP_C57BL6NJ_G0016680.1 mouse_genomes_project 1 93104596 93106748 - Hjurp protein_coding retained_intron MGP_C57BL6NJ_T0100883.1 MGP_C57BL6NJ_G0038929.1 mouse_genomes_project 1 83402612 83402738 - Gm24160 snoRNA snoRNA MGP_C57BL6NJ_T0012303.1 MGP_C57BL6NJ_G0010348.1 mouse_genomes_project 1 50791765 50793471 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019930.1 MGP_C57BL6NJ_G0016346.1 mouse_genomes_project 1 39507797 39606030 + MGP_C57BL6NJ_P0019930 Npas2 protein_coding protein_coding MGP_C57BL6NJ_T0019931.1 MGP_C57BL6NJ_G0016346.1 mouse_genomes_project 1 39508278 39686440 + MGP_C57BL6NJ_P0019931 Npas2 protein_coding protein_coding MGP_C57BL6NJ_T0022127.1 MGP_C57BL6NJ_G0016791.1 mouse_genomes_project 1 124894064 124946262 + MGP_C57BL6NJ_P0022127 protein_coding protein_coding MGP_C57BL6NJ_T0019786.1 MGP_C57BL6NJ_G0016321.1 mouse_genomes_project 1 36827768 36829966 + MGP_C57BL6NJ_P0019786 Cox5b protein_coding protein_coding MGP_C57BL6NJ_T0019787.1 MGP_C57BL6NJ_G0016321.1 mouse_genomes_project 1 36827912 36828835 + Cox5b protein_coding retained_intron MGP_C57BL6NJ_T0019788.1 MGP_C57BL6NJ_G0016321.1 mouse_genomes_project 1 36827926 36828792 + Cox5b protein_coding retained_intron MGP_C57BL6NJ_T0023593.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175426896 175564202 + MGP_C57BL6NJ_P0023593 Nme7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023595.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175430447 175563777 + MGP_C57BL6NJ_P0023595 Nme7 protein_coding protein_coding MGP_C57BL6NJ_T0023596.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175430502 175474406 + Nme7 protein_coding processed_transcript MGP_C57BL6NJ_T0023597.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175430523 175435930 + Nme7 protein_coding retained_intron MGP_C57BL6NJ_T0023598.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175430848 175563771 + MGP_C57BL6NJ_P0023598 Nme7 protein_coding protein_coding MGP_C57BL6NJ_T0023599.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175430872 175459264 + Nme7 protein_coding retained_intron MGP_C57BL6NJ_T0023600.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175435641 175473183 + MGP_C57BL6NJ_P0023600 Nme7 protein_coding protein_coding MGP_C57BL6NJ_T0023601.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175470241 175507444 + Nme7 protein_coding retained_intron MGP_C57BL6NJ_T0023602.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175498378 175563713 + Nme7 protein_coding processed_transcript MGP_C57BL6NJ_T0023603.1 MGP_C57BL6NJ_G0017087.1 mouse_genomes_project 1 175498378 175563769 + Nme7 protein_coding processed_transcript MGP_C57BL6NJ_T0099608.1 MGP_C57BL6NJ_G0037654.1 mouse_genomes_project 1 91926462 91926563 + Gm26187 snRNA snRNA MGP_C57BL6NJ_T0003082.1 MGP_C57BL6NJ_G0002886.1 mouse_genomes_project 1 174330769 174337459 + Gm20471 antisense antisense MGP_C57BL6NJ_T0021604.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92431907 92450123 + MGP_C57BL6NJ_P0021604 Atg16l1 protein_coding protein_coding MGP_C57BL6NJ_T0021605.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432050 92472129 + MGP_C57BL6NJ_P0021605 Atg16l1 protein_coding protein_coding MGP_C57BL6NJ_T0021606.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432093 92446717 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021607.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432113 92465900 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021608.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432113 92472123 + MGP_C57BL6NJ_P0021608 Atg16l1 protein_coding protein_coding MGP_C57BL6NJ_T0021609.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432123 92472126 + MGP_C57BL6NJ_P0021609 Atg16l1 protein_coding protein_coding MGP_C57BL6NJ_T0021610.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432125 92472126 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021611.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92432130 92443995 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021612.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92442912 92454845 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021613.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92455267 92458661 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0021614.1 MGP_C57BL6NJ_G0016664.1 mouse_genomes_project 1 92458160 92468263 + Atg16l1 protein_coding retained_intron MGP_C57BL6NJ_T0012487.1 MGP_C57BL6NJ_G0010532.1 mouse_genomes_project 1 117215889 117216702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020195.1 MGP_C57BL6NJ_G0016398.1 mouse_genomes_project 1 54163049 54206731 - MGP_C57BL6NJ_P0020195 Nab1 protein_coding protein_coding MGP_C57BL6NJ_T0020196.1 MGP_C57BL6NJ_G0016398.1 mouse_genomes_project 1 54163049 54206352 - MGP_C57BL6NJ_P0020196 Nab1 protein_coding protein_coding MGP_C57BL6NJ_T0020197.1 MGP_C57BL6NJ_G0016398.1 mouse_genomes_project 1 54164973 54196768 - MGP_C57BL6NJ_P0020197 Nab1 protein_coding protein_coding MGP_C57BL6NJ_T0020198.1 MGP_C57BL6NJ_G0016398.1 mouse_genomes_project 1 54164996 54172810 - Nab1 protein_coding retained_intron MGP_C57BL6NJ_T0020199.1 MGP_C57BL6NJ_G0016398.1 mouse_genomes_project 1 54196341 54206367 - Nab1 protein_coding processed_transcript MGP_C57BL6NJ_T0100877.1 MGP_C57BL6NJ_G0038923.1 mouse_genomes_project 1 65754814 65754892 + Gm26457 snoRNA snoRNA MGP_C57BL6NJ_T0020234.1 MGP_C57BL6NJ_G0016405.1 mouse_genomes_project 1 54878411 54913596 - MGP_C57BL6NJ_P0020234 1700019A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0020235.1 MGP_C57BL6NJ_G0016405.1 mouse_genomes_project 1 54878434 54913568 - MGP_C57BL6NJ_P0020235 1700019A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0024544.1 MGP_C57BL6NJ_G0017315.1 mouse_genomes_project 1 198190433 198217932 + MGP_C57BL6NJ_P0024544 Bpnt1 protein_coding protein_coding MGP_C57BL6NJ_T0024545.1 MGP_C57BL6NJ_G0017315.1 mouse_genomes_project 1 198190437 198216781 + MGP_C57BL6NJ_P0024545 Bpnt1 protein_coding protein_coding MGP_C57BL6NJ_T0024546.1 MGP_C57BL6NJ_G0017315.1 mouse_genomes_project 1 198190457 198204876 + MGP_C57BL6NJ_P0024546 Bpnt1 protein_coding protein_coding MGP_C57BL6NJ_T0024547.1 MGP_C57BL6NJ_G0017315.1 mouse_genomes_project 1 198190491 198206241 + Bpnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0022413.1 MGP_C57BL6NJ_G0016853.1 mouse_genomes_project 1 139546224 139558153 - MGP_C57BL6NJ_P0022413 Dyrk3 protein_coding protein_coding MGP_C57BL6NJ_T0022414.1 MGP_C57BL6NJ_G0016853.1 mouse_genomes_project 1 139548644 139558058 - MGP_C57BL6NJ_P0022414 Dyrk3 protein_coding protein_coding MGP_C57BL6NJ_T0023330.1 MGP_C57BL6NJ_G0017036.1 mouse_genomes_project 1 168111499 168178833 + MGP_C57BL6NJ_P0023330 Sec16b protein_coding protein_coding MGP_C57BL6NJ_T0023331.1 MGP_C57BL6NJ_G0017036.1 mouse_genomes_project 1 168111581 168178836 + MGP_C57BL6NJ_P0023331 Sec16b protein_coding protein_coding MGP_C57BL6NJ_T0023332.1 MGP_C57BL6NJ_G0017036.1 mouse_genomes_project 1 168133900 168178833 + MGP_C57BL6NJ_P0023332 Sec16b protein_coding protein_coding MGP_C57BL6NJ_T0023333.1 MGP_C57BL6NJ_G0017036.1 mouse_genomes_project 1 168140848 168172723 + MGP_C57BL6NJ_P0023333 Sec16b protein_coding protein_coding MGP_C57BL6NJ_T0023334.1 MGP_C57BL6NJ_G0017036.1 mouse_genomes_project 1 168145768 168152466 + Sec16b protein_coding retained_intron MGP_C57BL6NJ_T0005944.1 MGP_C57BL6NJ_G0004984.1 mouse_genomes_project 1 76829444 76846227 - Pinc lincRNA lincRNA MGP_C57BL6NJ_T0005945.1 MGP_C57BL6NJ_G0004984.1 mouse_genomes_project 1 76833987 76846227 - Pinc lincRNA lincRNA MGP_C57BL6NJ_T0012533.1 MGP_C57BL6NJ_G0010578.1 mouse_genomes_project 1 136297409 136297889 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012320.1 MGP_C57BL6NJ_G0010365.1 mouse_genomes_project 1 57108706 57109402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012483.1 MGP_C57BL6NJ_G0010528.1 mouse_genomes_project 1 116119678 116119865 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021867.1 MGP_C57BL6NJ_G0016728.1 mouse_genomes_project 1 98206027 98213251 + MGP_C57BL6NJ_P0021867 Aqp12 protein_coding protein_coding MGP_C57BL6NJ_T0012467.1 MGP_C57BL6NJ_G0010512.1 mouse_genomes_project 1 111571222 111571548 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012181.1 MGP_C57BL6NJ_G0010226.1 mouse_genomes_project 1 13807225 13807325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005923.1 MGP_C57BL6NJ_G0004968.1 mouse_genomes_project 1 66684279 66687744 + Gm26649 lincRNA lincRNA MGP_C57BL6NJ_T0012638.1 MGP_C57BL6NJ_G0010683.1 mouse_genomes_project 1 188486431 188486948 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000894.1 MGP_C57BL6NJ_G0000807.1 mouse_genomes_project 1 192583269 192585940 - TEC TEC MGP_C57BL6NJ_T0012344.1 MGP_C57BL6NJ_G0010389.1 mouse_genomes_project 1 63364093 63364618 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012285.1 MGP_C57BL6NJ_G0010330.1 mouse_genomes_project 1 46525245 46525973 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024273.1 MGP_C57BL6NJ_G0017259.1 mouse_genomes_project 1 191903514 191935512 - MGP_C57BL6NJ_P0024273 Tfb2m protein_coding protein_coding MGP_C57BL6NJ_T0024274.1 MGP_C57BL6NJ_G0017259.1 mouse_genomes_project 1 191920548 191922942 - Tfb2m protein_coding processed_transcript MGP_C57BL6NJ_T0024275.1 MGP_C57BL6NJ_G0017259.1 mouse_genomes_project 1 191920572 191935462 - Tfb2m protein_coding processed_transcript MGP_C57BL6NJ_T0024276.1 MGP_C57BL6NJ_G0017259.1 mouse_genomes_project 1 191922899 191935137 - Tfb2m protein_coding processed_transcript MGP_C57BL6NJ_T0000514.1 MGP_C57BL6NJ_G0000433.1 mouse_genomes_project 1 11237087 11239335 - TEC TEC MGP_C57BL6NJ_T0102673.1 MGP_C57BL6NJ_G0040468.1 mouse_genomes_project 1 113681333 113699414 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0021906.1 MGP_C57BL6NJ_G0016737.1 mouse_genomes_project 1 98612019 98643605 + MGP_C57BL6NJ_P0021906 Ano7 protein_coding protein_coding MGP_C57BL6NJ_T0021907.1 MGP_C57BL6NJ_G0016737.1 mouse_genomes_project 1 98612019 98642704 + MGP_C57BL6NJ_P0021907 Ano7 protein_coding protein_coding MGP_C57BL6NJ_T0021908.1 MGP_C57BL6NJ_G0016737.1 mouse_genomes_project 1 98641162 98642872 + MGP_C57BL6NJ_P0021908 Ano7 protein_coding protein_coding MGP_C57BL6NJ_T0000698.1 MGP_C57BL6NJ_G0000614.1 mouse_genomes_project 1 97098873 97104451 + TEC TEC MGP_C57BL6NJ_T0022721.1 MGP_C57BL6NJ_G0016919.1 mouse_genomes_project 1 143733958 143863996 - MGP_C57BL6NJ_P0022721 Lgr6 protein_coding protein_coding MGP_C57BL6NJ_T0022722.1 MGP_C57BL6NJ_G0016919.1 mouse_genomes_project 1 143733966 143864270 - MGP_C57BL6NJ_P0022722 Lgr6 protein_coding protein_coding MGP_C57BL6NJ_T0022723.1 MGP_C57BL6NJ_G0016919.1 mouse_genomes_project 1 143754713 143774354 - Lgr6 protein_coding processed_transcript MGP_C57BL6NJ_T0100881.1 MGP_C57BL6NJ_G0038927.1 mouse_genomes_project 1 69714880 69715010 + Gm25832 snoRNA snoRNA MGP_C57BL6NJ_T0022209.1 MGP_C57BL6NJ_G0016805.1 mouse_genomes_project 1 127461578 127524408 + MGP_C57BL6NJ_P0022209 Sctr protein_coding protein_coding MGP_C57BL6NJ_T0022210.1 MGP_C57BL6NJ_G0016805.1 mouse_genomes_project 1 127461718 127524406 + MGP_C57BL6NJ_P0022210 Sctr protein_coding protein_coding MGP_C57BL6NJ_T0000629.1 MGP_C57BL6NJ_G0000545.1 mouse_genomes_project 1 69536224 69537945 - TEC TEC MGP_C57BL6NJ_T0000482.1 MGP_C57BL6NJ_G0000401.1 mouse_genomes_project 1 496066 498375 - TEC TEC MGP_C57BL6NJ_T0006190.1 MGP_C57BL6NJ_G0005178.1 mouse_genomes_project 1 197313554 197346358 - 1700112H15Rik lincRNA lincRNA MGP_C57BL6NJ_T0003004.1 MGP_C57BL6NJ_G0002829.1 mouse_genomes_project 1 98536445 98549651 + Gm28535 antisense antisense MGP_C57BL6NJ_T0006193.1 MGP_C57BL6NJ_G0005180.1 mouse_genomes_project 1 197514811 197521304 + 4930488B22Rik lincRNA lincRNA MGP_C57BL6NJ_T0002989.1 MGP_C57BL6NJ_G0002814.1 mouse_genomes_project 1 86509572 86512409 - antisense antisense MGP_C57BL6NJ_T0019709.1 MGP_C57BL6NJ_G0016308.1 mouse_genomes_project 1 36139090 36183032 + MGP_C57BL6NJ_P0019709 Hs6st1 protein_coding protein_coding MGP_C57BL6NJ_T0019710.1 MGP_C57BL6NJ_G0016308.1 mouse_genomes_project 1 36178275 36181566 + Hs6st1 protein_coding retained_intron MGP_C57BL6NJ_T0024684.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204706525 204775101 - MGP_C57BL6NJ_P0024684 Ppp2r5a protein_coding protein_coding MGP_C57BL6NJ_T0024685.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204727317 204728978 - Ppp2r5a protein_coding retained_intron MGP_C57BL6NJ_T0024686.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204728846 204758179 - Ppp2r5a protein_coding processed_transcript MGP_C57BL6NJ_T0024687.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204729472 204741233 - MGP_C57BL6NJ_P0024687 Ppp2r5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024688.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204734222 204741222 - Ppp2r5a protein_coding retained_intron MGP_C57BL6NJ_T0024689.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204744063 204777359 - Ppp2r5a protein_coding processed_transcript MGP_C57BL6NJ_T0024690.1 MGP_C57BL6NJ_G0017344.1 mouse_genomes_project 1 204776719 204781134 - Ppp2r5a protein_coding retained_intron MGP_C57BL6NJ_T0000777.1 MGP_C57BL6NJ_G0000692.1 mouse_genomes_project 1 146738371 146743370 - TEC TEC MGP_C57BL6NJ_T0005924.1 MGP_C57BL6NJ_G0004969.1 mouse_genomes_project 1 66846001 66966584 - Gm28981 lincRNA lincRNA MGP_C57BL6NJ_T0005842.1 MGP_C57BL6NJ_G0004914.1 mouse_genomes_project 1 36072432 36080492 - Gm33222 lincRNA lincRNA MGP_C57BL6NJ_T0005843.1 MGP_C57BL6NJ_G0004914.1 mouse_genomes_project 1 36072515 36080438 - Gm33222 lincRNA lincRNA MGP_C57BL6NJ_T0022644.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853570 142863046 + MGP_C57BL6NJ_P0022644 Chil1 protein_coding protein_coding MGP_C57BL6NJ_T0022645.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853587 142863049 + MGP_C57BL6NJ_P0022645 Chil1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022646.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853798 142863191 + MGP_C57BL6NJ_P0022646 Chil1 protein_coding protein_coding MGP_C57BL6NJ_T0022647.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853798 142863039 + MGP_C57BL6NJ_P0022647 Chil1 protein_coding protein_coding MGP_C57BL6NJ_T0022648.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853868 142859561 + MGP_C57BL6NJ_P0022648 Chil1 protein_coding protein_coding MGP_C57BL6NJ_T0022649.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853875 142859571 + MGP_C57BL6NJ_P0022649 Chil1 protein_coding protein_coding MGP_C57BL6NJ_T0022650.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142853876 142859848 + Chil1 protein_coding retained_intron MGP_C57BL6NJ_T0022651.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142855195 142859630 + Chil1 protein_coding retained_intron MGP_C57BL6NJ_T0022652.1 MGP_C57BL6NJ_G0016903.1 mouse_genomes_project 1 142862135 142863037 + Chil1 protein_coding retained_intron MGP_C57BL6NJ_T0102645.1 MGP_C57BL6NJ_G0040440.1 mouse_genomes_project 1 68182146 68182314 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006159.1 MGP_C57BL6NJ_G0005158.1 mouse_genomes_project 1 189674008 189682895 + Gm37306 lincRNA lincRNA MGP_C57BL6NJ_T0021684.1 MGP_C57BL6NJ_G0016688.1 mouse_genomes_project 1 94953582 95025747 - MGP_C57BL6NJ_P0021684 Asb18 protein_coding protein_coding MGP_C57BL6NJ_T0021685.1 MGP_C57BL6NJ_G0016688.1 mouse_genomes_project 1 94955730 95025730 - MGP_C57BL6NJ_P0021685 Asb18 protein_coding protein_coding MGP_C57BL6NJ_T0021686.1 MGP_C57BL6NJ_G0016688.1 mouse_genomes_project 1 94955817 95025641 - MGP_C57BL6NJ_P0021686 Asb18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021687.1 MGP_C57BL6NJ_G0016688.1 mouse_genomes_project 1 94955818 95025641 - MGP_C57BL6NJ_P0021687 Asb18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023714.1 MGP_C57BL6NJ_G0017110.1 mouse_genomes_project 1 177916624 177935138 - MGP_C57BL6NJ_P0023714 Gm4847 protein_coding protein_coding MGP_C57BL6NJ_T0005909.1 MGP_C57BL6NJ_G0004958.1 mouse_genomes_project 1 63788083 63793931 + Gm11587 lincRNA lincRNA MGP_C57BL6NJ_T0023490.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173524325 173540749 - MGP_C57BL6NJ_P0023490 Mettl13 protein_coding protein_coding MGP_C57BL6NJ_T0023491.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173525877 173540720 - MGP_C57BL6NJ_P0023491 Mettl13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023492.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173528040 173536560 - MGP_C57BL6NJ_P0023492 Mettl13 protein_coding protein_coding MGP_C57BL6NJ_T0023493.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173529341 173540454 - Mettl13 protein_coding processed_transcript MGP_C57BL6NJ_T0023494.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173531118 173538725 - MGP_C57BL6NJ_P0023494 Mettl13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023495.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173533647 173540736 - Mettl13 protein_coding retained_intron MGP_C57BL6NJ_T0023496.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173535834 173540726 - Mettl13 protein_coding retained_intron MGP_C57BL6NJ_T0023497.1 MGP_C57BL6NJ_G0017062.1 mouse_genomes_project 1 173539025 173540727 - Mettl13 protein_coding retained_intron MGP_C57BL6NJ_T0023385.1 MGP_C57BL6NJ_G0017045.1 mouse_genomes_project 1 171006867 171019000 - MGP_C57BL6NJ_P0023385 Cacybp protein_coding protein_coding MGP_C57BL6NJ_T0023386.1 MGP_C57BL6NJ_G0017045.1 mouse_genomes_project 1 171012240 171018930 - MGP_C57BL6NJ_P0023386 Cacybp protein_coding protein_coding MGP_C57BL6NJ_T0023387.1 MGP_C57BL6NJ_G0017045.1 mouse_genomes_project 1 171014211 171018851 - Cacybp protein_coding retained_intron MGP_C57BL6NJ_T0019262.1 MGP_C57BL6NJ_G0016216.1 mouse_genomes_project 1 7114271 7142575 + MGP_C57BL6NJ_P0019262 Adhfe1 protein_coding protein_coding MGP_C57BL6NJ_T0019263.1 MGP_C57BL6NJ_G0016216.1 mouse_genomes_project 1 7114378 7141506 + MGP_C57BL6NJ_P0019263 Adhfe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019264.1 MGP_C57BL6NJ_G0016216.1 mouse_genomes_project 1 7114415 7120011 + MGP_C57BL6NJ_P0019264 Adhfe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019265.1 MGP_C57BL6NJ_G0016216.1 mouse_genomes_project 1 7114430 7121892 + MGP_C57BL6NJ_P0019265 Adhfe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019266.1 MGP_C57BL6NJ_G0016216.1 mouse_genomes_project 1 7114442 7145278 + MGP_C57BL6NJ_P0019266 Adhfe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099577.1 MGP_C57BL6NJ_G0037623.1 mouse_genomes_project 1 24220746 24220853 - Gm22260 snRNA snRNA MGP_C57BL6NJ_T0023350.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169418089 169689403 - MGP_C57BL6NJ_P0023350 Pappa2 protein_coding protein_coding MGP_C57BL6NJ_T0023351.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169481074 169535639 - MGP_C57BL6NJ_P0023351 Pappa2 protein_coding protein_coding MGP_C57BL6NJ_T0023352.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169535443 169571160 - Pappa2 protein_coding retained_intron MGP_C57BL6NJ_T0023353.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169553109 169564926 - Pappa2 protein_coding processed_transcript MGP_C57BL6NJ_T0023354.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169689111 169692910 - Pappa2 protein_coding processed_transcript MGP_C57BL6NJ_T0023355.1 MGP_C57BL6NJ_G0017039.1 mouse_genomes_project 1 169689162 169713019 - Pappa2 protein_coding processed_transcript MGP_C57BL6NJ_T0022842.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145103247 145186630 - MGP_C57BL6NJ_P0022842 Camsap2 protein_coding protein_coding MGP_C57BL6NJ_T0022843.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145103376 145116865 - MGP_C57BL6NJ_P0022843 Camsap2 protein_coding protein_coding MGP_C57BL6NJ_T0022844.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145104284 145186224 - MGP_C57BL6NJ_P0022844 Camsap2 protein_coding protein_coding MGP_C57BL6NJ_T0022845.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145105730 145186224 - MGP_C57BL6NJ_P0022845 Camsap2 protein_coding protein_coding MGP_C57BL6NJ_T0022846.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145129609 145132502 - Camsap2 protein_coding processed_transcript MGP_C57BL6NJ_T0022847.1 MGP_C57BL6NJ_G0016944.1 mouse_genomes_project 1 145167652 145186616 - Camsap2 protein_coding processed_transcript MGP_C57BL6NJ_T0012288.1 MGP_C57BL6NJ_G0010333.1 mouse_genomes_project 1 46866532 46867708 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012530.1 MGP_C57BL6NJ_G0010575.1 mouse_genomes_project 1 132522042 132522448 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102669.1 MGP_C57BL6NJ_G0040464.1 mouse_genomes_project 1 110843310 110844670 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022848.1 MGP_C57BL6NJ_G0016945.1 mouse_genomes_project 1 145257753 145260275 + Ddx59 protein_coding retained_intron MGP_C57BL6NJ_T0022849.1 MGP_C57BL6NJ_G0016945.1 mouse_genomes_project 1 145257753 145283235 + MGP_C57BL6NJ_P0022849 Ddx59 protein_coding protein_coding MGP_C57BL6NJ_T0022850.1 MGP_C57BL6NJ_G0016945.1 mouse_genomes_project 1 145273259 145275502 + Ddx59 protein_coding processed_transcript MGP_C57BL6NJ_T0022851.1 MGP_C57BL6NJ_G0016945.1 mouse_genomes_project 1 145275478 145277143 + Ddx59 protein_coding retained_intron MGP_C57BL6NJ_T0012612.1 MGP_C57BL6NJ_G0010657.1 mouse_genomes_project 1 174817197 174818239 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021071.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78684466 78693140 - MGP_C57BL6NJ_P0021071 Abcb6 protein_coding protein_coding MGP_C57BL6NJ_T0021072.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78684468 78693034 - Abcb6 protein_coding retained_intron MGP_C57BL6NJ_T0021073.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78684507 78685619 - MGP_C57BL6NJ_P0021073 Abcb6 protein_coding protein_coding MGP_C57BL6NJ_T0021074.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78685469 78693034 - Abcb6 protein_coding retained_intron MGP_C57BL6NJ_T0021075.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78688300 78691697 - Abcb6 protein_coding retained_intron MGP_C57BL6NJ_T0021076.1 MGP_C57BL6NJ_G0016565.1 mouse_genomes_project 1 78690657 78693124 - Abcb6 protein_coding retained_intron MGP_C57BL6NJ_T0005910.1 MGP_C57BL6NJ_G0004959.1 mouse_genomes_project 1 63863069 63881063 + 9530026F06Rik lincRNA lincRNA MGP_C57BL6NJ_T0012579.1 MGP_C57BL6NJ_G0010624.1 mouse_genomes_project 1 160132108 160132710 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000763.1 MGP_C57BL6NJ_G0000679.1 mouse_genomes_project 1 141719562 141722669 - TEC TEC MGP_C57BL6NJ_T0000764.1 MGP_C57BL6NJ_G0000679.1 mouse_genomes_project 1 141722066 141722669 - TEC TEC MGP_C57BL6NJ_T0006103.1 MGP_C57BL6NJ_G0005114.1 mouse_genomes_project 1 164371725 164374547 - Gm29291 lincRNA lincRNA MGP_C57BL6NJ_T0006104.1 MGP_C57BL6NJ_G0005114.1 mouse_genomes_project 1 164371881 164374551 - Gm29291 lincRNA lincRNA MGP_C57BL6NJ_T0000801.1 MGP_C57BL6NJ_G0000715.1 mouse_genomes_project 1 156032767 156037450 - TEC TEC MGP_C57BL6NJ_T0019538.1 MGP_C57BL6NJ_G0016274.1 mouse_genomes_project 1 21823510 21825291 - MGP_C57BL6NJ_P0019538 4933415F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0006157.1 MGP_C57BL6NJ_G0005156.1 mouse_genomes_project 1 188420483 188424040 + Gm38101 lincRNA lincRNA MGP_C57BL6NJ_T0012173.1 MGP_C57BL6NJ_G0010218.1 mouse_genomes_project 1 8900612 8901221 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102708.1 MGP_C57BL6NJ_G0040503.1 mouse_genomes_project 1 194069791 194070469 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0023967.1 MGP_C57BL6NJ_G0017171.1 mouse_genomes_project 1 183398373 183424530 + MGP_C57BL6NJ_P0023967 Cd48 protein_coding protein_coding MGP_C57BL6NJ_T0023968.1 MGP_C57BL6NJ_G0017171.1 mouse_genomes_project 1 183398374 183424528 + MGP_C57BL6NJ_P0023968 Cd48 protein_coding protein_coding MGP_C57BL6NJ_T0022824.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 144960555 145012490 + MGP_C57BL6NJ_P0022824 Kif21b protein_coding protein_coding MGP_C57BL6NJ_T0022825.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 144960620 144981679 + Kif21b protein_coding retained_intron MGP_C57BL6NJ_T0022826.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 144960888 145009233 + MGP_C57BL6NJ_P0022826 Kif21b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022827.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 144994833 144999520 + MGP_C57BL6NJ_P0022827 Kif21b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022828.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 144997424 144999306 + Kif21b protein_coding retained_intron MGP_C57BL6NJ_T0022829.1 MGP_C57BL6NJ_G0016940.1 mouse_genomes_project 1 145003805 145006791 + Kif21b protein_coding processed_transcript MGP_C57BL6NJ_T0102696.1 MGP_C57BL6NJ_G0040491.1 mouse_genomes_project 1 186126911 186127455 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0023836.1 MGP_C57BL6NJ_G0017145.1 mouse_genomes_project 1 182810963 182821392 + MGP_C57BL6NJ_P0023836 Mpz protein_coding protein_coding MGP_C57BL6NJ_T0023837.1 MGP_C57BL6NJ_G0017145.1 mouse_genomes_project 1 182815759 182820752 + MGP_C57BL6NJ_P0023837 Mpz protein_coding protein_coding MGP_C57BL6NJ_T0023838.1 MGP_C57BL6NJ_G0017145.1 mouse_genomes_project 1 182819838 182820475 + Mpz protein_coding processed_transcript MGP_C57BL6NJ_T0023839.1 MGP_C57BL6NJ_G0017145.1 mouse_genomes_project 1 182819947 182820490 + Mpz protein_coding processed_transcript MGP_C57BL6NJ_T0019394.1 MGP_C57BL6NJ_G0016236.1 mouse_genomes_project 1 11570292 11616955 + MGP_C57BL6NJ_P0019394 Xkr9 protein_coding protein_coding MGP_C57BL6NJ_T0022355.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137542690 137694661 + Thsd7b protein_coding retained_intron MGP_C57BL6NJ_T0022356.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137542732 138526720 + MGP_C57BL6NJ_P0022356 Thsd7b protein_coding protein_coding MGP_C57BL6NJ_T0022357.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137542851 138335223 + MGP_C57BL6NJ_P0022357 Thsd7b protein_coding protein_coding MGP_C57BL6NJ_T0022358.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137542873 137902201 + Thsd7b protein_coding processed_transcript MGP_C57BL6NJ_T0022359.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137805965 137902235 + MGP_C57BL6NJ_P0022359 Thsd7b protein_coding protein_coding MGP_C57BL6NJ_T0022360.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 137888232 137891001 + Thsd7b protein_coding retained_intron MGP_C57BL6NJ_T0022361.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 138207485 138479915 + Thsd7b protein_coding processed_transcript MGP_C57BL6NJ_T0022362.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 138459853 138526718 + Thsd7b protein_coding processed_transcript MGP_C57BL6NJ_T0022363.1 MGP_C57BL6NJ_G0016836.1 mouse_genomes_project 1 138459868 138461421 + Thsd7b protein_coding processed_transcript MGP_C57BL6NJ_T0002901.1 MGP_C57BL6NJ_G0002750.1 mouse_genomes_project 1 12727103 12751900 + Gm9947 antisense antisense MGP_C57BL6NJ_T0002902.1 MGP_C57BL6NJ_G0002750.1 mouse_genomes_project 1 12729620 12732540 + Gm9947 antisense antisense MGP_C57BL6NJ_T0005930.1 MGP_C57BL6NJ_G0004975.1 mouse_genomes_project 1 72477146 72480175 + Gm28497 lincRNA lincRNA MGP_C57BL6NJ_T0000776.1 MGP_C57BL6NJ_G0000691.1 mouse_genomes_project 1 146272401 146272810 - TEC TEC MGP_C57BL6NJ_T0006115.1 MGP_C57BL6NJ_G0005122.1 mouse_genomes_project 1 167521235 167609578 - Gm28694 lincRNA lincRNA MGP_C57BL6NJ_T0020007.1 MGP_C57BL6NJ_G0016365.1 mouse_genomes_project 1 43367638 43376020 + MGP_C57BL6NJ_P0020007 Pou3f3 protein_coding protein_coding MGP_C57BL6NJ_T0009727.1 MGP_C57BL6NJ_G0007812.1 mouse_genomes_project 1 146957785 146957865 + Mir181b-1 miRNA miRNA MGP_C57BL6NJ_T0012670.1 MGP_C57BL6NJ_G0010715.1 mouse_genomes_project 1 205433051 205433283 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021672.1 MGP_C57BL6NJ_G0016684.1 mouse_genomes_project 1 93596256 93641040 - MGP_C57BL6NJ_P0021672 Arl4c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021673.1 MGP_C57BL6NJ_G0016684.1 mouse_genomes_project 1 93596258 93641040 - MGP_C57BL6NJ_P0021673 Arl4c protein_coding protein_coding MGP_C57BL6NJ_T0021674.1 MGP_C57BL6NJ_G0016684.1 mouse_genomes_project 1 93637388 93641385 - MGP_C57BL6NJ_P0021674 Arl4c protein_coding protein_coding MGP_C57BL6NJ_T0003000.1 MGP_C57BL6NJ_G0002825.1 mouse_genomes_project 1 98018930 98037255 - Gm29481 antisense antisense MGP_C57BL6NJ_T0019498.1 MGP_C57BL6NJ_G0016263.1 mouse_genomes_project 1 19295245 19312590 - MGP_C57BL6NJ_P0019498 Mcm3 protein_coding protein_coding MGP_C57BL6NJ_T0019499.1 MGP_C57BL6NJ_G0016263.1 mouse_genomes_project 1 19295250 19312538 - Mcm3 protein_coding retained_intron MGP_C57BL6NJ_T0019500.1 MGP_C57BL6NJ_G0016263.1 mouse_genomes_project 1 19295283 19295999 - Mcm3 protein_coding retained_intron MGP_C57BL6NJ_T0019501.1 MGP_C57BL6NJ_G0016263.1 mouse_genomes_project 1 19295442 19297211 - Mcm3 protein_coding retained_intron MGP_C57BL6NJ_T0019502.1 MGP_C57BL6NJ_G0016263.1 mouse_genomes_project 1 19296963 19298218 - Mcm3 protein_coding retained_intron MGP_C57BL6NJ_T0000666.1 MGP_C57BL6NJ_G0000582.1 mouse_genomes_project 1 86213460 86215264 + TEC TEC MGP_C57BL6NJ_T0022817.1 MGP_C57BL6NJ_G0016938.1 mouse_genomes_project 1 144876687 144877254 + MGP_C57BL6NJ_P0022817 Ascl5 protein_coding protein_coding MGP_C57BL6NJ_T0003044.1 MGP_C57BL6NJ_G0002856.1 mouse_genomes_project 1 144027848 144046328 + Gm26642 antisense antisense MGP_C57BL6NJ_T0006134.1 MGP_C57BL6NJ_G0005137.1 mouse_genomes_project 1 175832694 175859488 + Gm37184 lincRNA lincRNA MGP_C57BL6NJ_T0024792.1 MGP_C57BL6NJ_G0017362.1 mouse_genomes_project 1 206675768 206698371 - MGP_C57BL6NJ_P0024792 Hsd11b1 protein_coding protein_coding MGP_C57BL6NJ_T0024793.1 MGP_C57BL6NJ_G0017362.1 mouse_genomes_project 1 206677715 206699670 - MGP_C57BL6NJ_P0024793 Hsd11b1 protein_coding protein_coding MGP_C57BL6NJ_T0024794.1 MGP_C57BL6NJ_G0017362.1 mouse_genomes_project 1 206684733 206696519 - MGP_C57BL6NJ_P0024794 Hsd11b1 protein_coding protein_coding MGP_C57BL6NJ_T0024795.1 MGP_C57BL6NJ_G0017362.1 mouse_genomes_project 1 206693154 206695132 - Hsd11b1 protein_coding retained_intron MGP_C57BL6NJ_T0024796.1 MGP_C57BL6NJ_G0017362.1 mouse_genomes_project 1 206694382 206697533 - Hsd11b1 protein_coding processed_transcript MGP_C57BL6NJ_T0102131.1 MGP_C57BL6NJ_G0040172.1 mouse_genomes_project 1 168011165 168019057 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102132.1 MGP_C57BL6NJ_G0040172.1 mouse_genomes_project 1 168011453 168019054 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102133.1 MGP_C57BL6NJ_G0040172.1 mouse_genomes_project 1 168011791 168012085 + transcribed_processed_pseudogene TEC MGP_C57BL6NJ_T0102134.1 MGP_C57BL6NJ_G0040172.1 mouse_genomes_project 1 168018722 168018973 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0012281.1 MGP_C57BL6NJ_G0010326.1 mouse_genomes_project 1 45745711 45746456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020798.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 70936625 72120610 - MGP_C57BL6NJ_P0020798 Erbb4 protein_coding protein_coding MGP_C57BL6NJ_T0020799.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 70936625 72120913 - MGP_C57BL6NJ_P0020799 Erbb4 protein_coding protein_coding MGP_C57BL6NJ_T0020800.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 70944480 71725823 - MGP_C57BL6NJ_P0020800 Erbb4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020801.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 70944480 71725210 - MGP_C57BL6NJ_P0020801 Erbb4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020802.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 71171026 72120610 - MGP_C57BL6NJ_P0020802 Erbb4 protein_coding protein_coding MGP_C57BL6NJ_T0020803.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 71213704 71221868 - Erbb4 protein_coding processed_transcript MGP_C57BL6NJ_T0020804.1 MGP_C57BL6NJ_G0016511.1 mouse_genomes_project 1 71221699 71258558 - Erbb4 protein_coding retained_intron MGP_C57BL6NJ_T0012426.1 MGP_C57BL6NJ_G0010471.1 mouse_genomes_project 1 92213718 92214772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012317.1 MGP_C57BL6NJ_G0010362.1 mouse_genomes_project 1 55087987 55088560 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021946.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98962568 99020800 - MGP_C57BL6NJ_P0021946 Thap4 protein_coding protein_coding MGP_C57BL6NJ_T0021947.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98966020 98992029 - MGP_C57BL6NJ_P0021947 Thap4 protein_coding protein_coding MGP_C57BL6NJ_T0021948.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98966023 99020884 - MGP_C57BL6NJ_P0021948 Thap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021949.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98966024 98975546 - MGP_C57BL6NJ_P0021949 Thap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021950.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98975343 99013329 - MGP_C57BL6NJ_P0021950 Thap4 protein_coding protein_coding MGP_C57BL6NJ_T0021951.1 MGP_C57BL6NJ_G0016743.1 mouse_genomes_project 1 98984751 99020670 - Thap4 protein_coding retained_intron MGP_C57BL6NJ_T0020855.1 MGP_C57BL6NJ_G0016519.1 mouse_genomes_project 1 75449965 75508873 - MGP_C57BL6NJ_P0020855 Mreg protein_coding protein_coding MGP_C57BL6NJ_T0002913.1 MGP_C57BL6NJ_G0002757.1 mouse_genomes_project 1 17435092 17481921 - Gm15825 antisense antisense MGP_C57BL6NJ_T0012365.1 MGP_C57BL6NJ_G0010410.1 mouse_genomes_project 1 68300867 68301272 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012363.1 MGP_C57BL6NJ_G0010408.1 mouse_genomes_project 1 68195778 68196100 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021122.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78727437 78732504 - MGP_C57BL6NJ_P0021122 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021123.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78728181 78731834 - MGP_C57BL6NJ_P0021123 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021124.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78728821 78730644 - MGP_C57BL6NJ_P0021124 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021125.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78729165 78730624 - MGP_C57BL6NJ_P0021125 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021126.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78729644 78732453 - Tuba4a protein_coding retained_intron MGP_C57BL6NJ_T0021127.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78730066 78733075 - MGP_C57BL6NJ_P0021127 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021128.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78730098 78732098 - MGP_C57BL6NJ_P0021128 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0021129.1 MGP_C57BL6NJ_G0016570.1 mouse_genomes_project 1 78730122 78732098 - MGP_C57BL6NJ_P0021129 Tuba4a protein_coding protein_coding MGP_C57BL6NJ_T0012523.1 MGP_C57BL6NJ_G0010568.1 mouse_genomes_project 1 130509507 130509884 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005961.1 MGP_C57BL6NJ_G0004996.1 mouse_genomes_project 1 82381675 82400508 - 5730419F03Rik lincRNA lincRNA MGP_C57BL6NJ_T0019448.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14768984 14784136 - MGP_C57BL6NJ_P0019448 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019449.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770026 14784294 - MGP_C57BL6NJ_P0019449 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019450.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770401 14784270 - MGP_C57BL6NJ_P0019450 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019451.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770428 14784290 - MGP_C57BL6NJ_P0019451 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019452.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770450 14784166 - MGP_C57BL6NJ_P0019452 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019453.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770601 14775293 - MGP_C57BL6NJ_P0019453 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019454.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14770731 14783877 - MGP_C57BL6NJ_P0019454 Tceb1 protein_coding protein_coding MGP_C57BL6NJ_T0019455.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14774089 14784152 - Tceb1 protein_coding retained_intron MGP_C57BL6NJ_T0019456.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14774208 14784167 - Tceb1 protein_coding retained_intron MGP_C57BL6NJ_T0019457.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14774934 14784130 - Tceb1 protein_coding retained_intron MGP_C57BL6NJ_T0019458.1 MGP_C57BL6NJ_G0016248.1 mouse_genomes_project 1 14774989 14784294 - Tceb1 protein_coding retained_intron MGP_C57BL6NJ_T0012476.1 MGP_C57BL6NJ_G0010521.1 mouse_genomes_project 1 113508883 113645283 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000496.1 MGP_C57BL6NJ_G0000415.1 mouse_genomes_project 1 5986165 5989671 - TEC TEC MGP_C57BL6NJ_T0003033.1 MGP_C57BL6NJ_G0002849.1 mouse_genomes_project 1 141267576 141271048 + Gm10538 antisense antisense MGP_C57BL6NJ_T0003091.1 MGP_C57BL6NJ_G0002894.1 mouse_genomes_project 1 181471258 181474246 + 3110045C21Rik antisense antisense MGP_C57BL6NJ_T0003092.1 MGP_C57BL6NJ_G0002894.1 mouse_genomes_project 1 181471301 181474220 + 3110045C21Rik antisense antisense MGP_C57BL6NJ_T0024708.1 MGP_C57BL6NJ_G0017348.1 mouse_genomes_project 1 205242395 205254002 + MGP_C57BL6NJ_P0024708 Nek2 protein_coding protein_coding MGP_C57BL6NJ_T0024709.1 MGP_C57BL6NJ_G0017348.1 mouse_genomes_project 1 205242461 205249244 + Nek2 protein_coding retained_intron MGP_C57BL6NJ_T0024710.1 MGP_C57BL6NJ_G0017348.1 mouse_genomes_project 1 205243133 205246777 + Nek2 protein_coding retained_intron MGP_C57BL6NJ_T0024711.1 MGP_C57BL6NJ_G0017348.1 mouse_genomes_project 1 205248099 205250940 + Nek2 protein_coding processed_transcript MGP_C57BL6NJ_T0021492.1 MGP_C57BL6NJ_G0016639.1 mouse_genomes_project 1 90886033 90887909 + B3gnt7 protein_coding retained_intron MGP_C57BL6NJ_T0021493.1 MGP_C57BL6NJ_G0016639.1 mouse_genomes_project 1 90886435 90890507 + MGP_C57BL6NJ_P0021493 B3gnt7 protein_coding protein_coding MGP_C57BL6NJ_T0021494.1 MGP_C57BL6NJ_G0016639.1 mouse_genomes_project 1 90886732 90889051 + MGP_C57BL6NJ_P0021494 B3gnt7 protein_coding protein_coding MGP_C57BL6NJ_T0022787.1 MGP_C57BL6NJ_G0016933.1 mouse_genomes_project 1 144632668 144647217 + MGP_C57BL6NJ_P0022787 Lad1 protein_coding protein_coding MGP_C57BL6NJ_T0022788.1 MGP_C57BL6NJ_G0016933.1 mouse_genomes_project 1 144643869 144646582 + Lad1 protein_coding processed_transcript MGP_C57BL6NJ_T0022789.1 MGP_C57BL6NJ_G0016933.1 mouse_genomes_project 1 144644408 144646337 + Lad1 protein_coding processed_transcript MGP_C57BL6NJ_T0021529.1 MGP_C57BL6NJ_G0016650.1 mouse_genomes_project 1 91807479 91809655 + Akp3 protein_coding retained_intron MGP_C57BL6NJ_T0021530.1 MGP_C57BL6NJ_G0016650.1 mouse_genomes_project 1 91807514 91810419 + MGP_C57BL6NJ_P0021530 Akp3 protein_coding protein_coding MGP_C57BL6NJ_T0012289.1 MGP_C57BL6NJ_G0010334.1 mouse_genomes_project 1 46935559 46940924 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022393.1 MGP_C57BL6NJ_G0016846.1 mouse_genomes_project 1 139227016 139252527 + MGP_C57BL6NJ_P0022393 Pigr protein_coding protein_coding MGP_C57BL6NJ_T0022394.1 MGP_C57BL6NJ_G0016846.1 mouse_genomes_project 1 139227220 139244994 + MGP_C57BL6NJ_P0022394 Pigr protein_coding protein_coding MGP_C57BL6NJ_T0022395.1 MGP_C57BL6NJ_G0016846.1 mouse_genomes_project 1 139229342 139244962 + MGP_C57BL6NJ_P0022395 Pigr protein_coding protein_coding MGP_C57BL6NJ_T0020328.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57251199 57308588 - MGP_C57BL6NJ_P0020328 Boll protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020329.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57276022 57371954 - MGP_C57BL6NJ_P0020329 Boll protein_coding protein_coding MGP_C57BL6NJ_T0020330.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57308478 57374532 - MGP_C57BL6NJ_P0020330 Boll protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020331.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57308478 57373939 - MGP_C57BL6NJ_P0020331 Boll protein_coding protein_coding MGP_C57BL6NJ_T0020332.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57308478 57374532 - MGP_C57BL6NJ_P0020332 Boll protein_coding protein_coding MGP_C57BL6NJ_T0020333.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57355375 57374682 - MGP_C57BL6NJ_P0020333 Boll protein_coding protein_coding MGP_C57BL6NJ_T0020334.1 MGP_C57BL6NJ_G0016426.1 mouse_genomes_project 1 57358887 57371954 - Boll protein_coding processed_transcript MGP_C57BL6NJ_T0019463.1 MGP_C57BL6NJ_G0016250.1 mouse_genomes_project 1 14819678 14823568 + Ly96 protein_coding retained_intron MGP_C57BL6NJ_T0019464.1 MGP_C57BL6NJ_G0016250.1 mouse_genomes_project 1 14820060 14843528 + MGP_C57BL6NJ_P0019464 Ly96 protein_coding protein_coding MGP_C57BL6NJ_T0019465.1 MGP_C57BL6NJ_G0016250.1 mouse_genomes_project 1 14820135 14843454 + MGP_C57BL6NJ_P0019465 Ly96 protein_coding protein_coding MGP_C57BL6NJ_T0005906.1 MGP_C57BL6NJ_G0004955.1 mouse_genomes_project 1 63220018 63227688 - Gm11579 lincRNA lincRNA MGP_C57BL6NJ_T0100934.1 MGP_C57BL6NJ_G0038980.1 mouse_genomes_project 1 176797616 176797743 - Gm23208 snoRNA snoRNA MGP_C57BL6NJ_T0009654.1 MGP_C57BL6NJ_G0007739.1 mouse_genomes_project 1 6291411 6291521 + Gm24276 miRNA miRNA MGP_C57BL6NJ_T0003054.1 MGP_C57BL6NJ_G0002865.1 mouse_genomes_project 1 160340891 160367208 - 2310030A07Rik antisense antisense MGP_C57BL6NJ_T0000731.1 MGP_C57BL6NJ_G0000647.1 mouse_genomes_project 1 131219662 131222880 - TEC TEC MGP_C57BL6NJ_T0023798.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182455365 182481719 - MGP_C57BL6NJ_P0023798 Dusp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023799.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182456043 182481802 - MGP_C57BL6NJ_P0023799 Dusp12 protein_coding protein_coding MGP_C57BL6NJ_T0023800.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182456043 182481657 - MGP_C57BL6NJ_P0023800 Dusp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023801.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182456043 182481461 - MGP_C57BL6NJ_P0023801 Dusp12 protein_coding protein_coding MGP_C57BL6NJ_T0023802.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182456044 182481669 - MGP_C57BL6NJ_P0023802 Dusp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023803.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182456375 182481658 - MGP_C57BL6NJ_P0023803 Dusp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023804.1 MGP_C57BL6NJ_G0017136.1 mouse_genomes_project 1 182462514 182481266 - MGP_C57BL6NJ_P0023804 Dusp12 protein_coding protein_coding MGP_C57BL6NJ_T0022257.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133335416 133379938 - MGP_C57BL6NJ_P0022257 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022258.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133335442 133380091 - MGP_C57BL6NJ_P0022258 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022259.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133337789 133339617 - protein_coding retained_intron MGP_C57BL6NJ_T0022260.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133347161 133350242 - protein_coding retained_intron MGP_C57BL6NJ_T0022261.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133347180 133380337 - MGP_C57BL6NJ_P0022261 protein_coding protein_coding MGP_C57BL6NJ_T0022262.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133347210 133379296 - MGP_C57BL6NJ_P0022262 protein_coding protein_coding MGP_C57BL6NJ_T0022263.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133348592 133380064 - MGP_C57BL6NJ_P0022263 protein_coding protein_coding MGP_C57BL6NJ_T0022264.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133348649 133380317 - MGP_C57BL6NJ_P0022264 protein_coding protein_coding MGP_C57BL6NJ_T0022265.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133348658 133380080 - MGP_C57BL6NJ_P0022265 protein_coding protein_coding MGP_C57BL6NJ_T0022266.1 MGP_C57BL6NJ_G0016818.1 mouse_genomes_project 1 133358123 133380038 - protein_coding retained_intron MGP_C57BL6NJ_T0100868.1 MGP_C57BL6NJ_G0038914.1 mouse_genomes_project 1 54824854 54824955 + Gm24349 snoRNA snoRNA MGP_C57BL6NJ_T0012510.1 MGP_C57BL6NJ_G0010555.1 mouse_genomes_project 1 126647061 126647853 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000576.1 MGP_C57BL6NJ_G0000492.1 mouse_genomes_project 1 37030679 37030822 - TEC TEC MGP_C57BL6NJ_T0012551.1 MGP_C57BL6NJ_G0010596.1 mouse_genomes_project 1 147413685 147413836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006092.1 MGP_C57BL6NJ_G0005104.1 mouse_genomes_project 1 158067960 158084244 - Gm29515 lincRNA lincRNA MGP_C57BL6NJ_T0012229.1 MGP_C57BL6NJ_G0010274.1 mouse_genomes_project 1 30857525 30858084 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022891.1 MGP_C57BL6NJ_G0016953.1 mouse_genomes_project 1 147904720 147909590 - MGP_C57BL6NJ_P0022891 2310009B15Rik protein_coding protein_coding MGP_C57BL6NJ_T0022892.1 MGP_C57BL6NJ_G0016953.1 mouse_genomes_project 1 147904721 147907088 - 2310009B15Rik protein_coding retained_intron MGP_C57BL6NJ_T0022893.1 MGP_C57BL6NJ_G0016953.1 mouse_genomes_project 1 147904770 147909585 - MGP_C57BL6NJ_P0022893 2310009B15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000544.1 MGP_C57BL6NJ_G0000461.1 mouse_genomes_project 1 24639513 24643508 - TEC TEC MGP_C57BL6NJ_T0000646.1 MGP_C57BL6NJ_G0000562.1 mouse_genomes_project 1 75054237 75057758 - TEC TEC MGP_C57BL6NJ_T0012659.1 MGP_C57BL6NJ_G0010704.1 mouse_genomes_project 1 200000435 200001033 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000579.1 MGP_C57BL6NJ_G0000495.1 mouse_genomes_project 1 37531526 37532060 - TEC TEC MGP_C57BL6NJ_T0020908.1 MGP_C57BL6NJ_G0016534.1 mouse_genomes_project 1 77731681 77732486 + MGP_C57BL6NJ_P0020908 Arpc2 protein_coding protein_coding MGP_C57BL6NJ_T0020909.1 MGP_C57BL6NJ_G0016534.1 mouse_genomes_project 1 77732094 77763634 + MGP_C57BL6NJ_P0020909 Arpc2 protein_coding protein_coding MGP_C57BL6NJ_T0020910.1 MGP_C57BL6NJ_G0016534.1 mouse_genomes_project 1 77732114 77763412 + MGP_C57BL6NJ_P0020910 Arpc2 protein_coding protein_coding MGP_C57BL6NJ_T0020911.1 MGP_C57BL6NJ_G0016534.1 mouse_genomes_project 1 77732147 77763413 + MGP_C57BL6NJ_P0020911 Arpc2 protein_coding protein_coding MGP_C57BL6NJ_T0099616.1 MGP_C57BL6NJ_G0037662.1 mouse_genomes_project 1 112231700 112231807 + Gm26214 snRNA snRNA MGP_C57BL6NJ_T0006153.1 MGP_C57BL6NJ_G0005152.1 mouse_genomes_project 1 182586834 182591357 + Gm10522 lincRNA lincRNA MGP_C57BL6NJ_T0021285.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83615750 83671308 - MGP_C57BL6NJ_P0021285 Wdfy1 protein_coding protein_coding MGP_C57BL6NJ_T0021286.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83618852 83671277 - MGP_C57BL6NJ_P0021286 Wdfy1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021287.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83630735 83685074 - MGP_C57BL6NJ_P0021287 Wdfy1 protein_coding protein_coding MGP_C57BL6NJ_T0021288.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83632359 83671308 - MGP_C57BL6NJ_P0021288 Wdfy1 protein_coding protein_coding MGP_C57BL6NJ_T0021289.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83632372 83671308 - MGP_C57BL6NJ_P0021289 Wdfy1 protein_coding protein_coding MGP_C57BL6NJ_T0021290.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83632561 83636055 - Wdfy1 protein_coding processed_transcript MGP_C57BL6NJ_T0021291.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83640804 83671260 - Wdfy1 protein_coding retained_intron MGP_C57BL6NJ_T0021292.1 MGP_C57BL6NJ_G0016597.1 mouse_genomes_project 1 83641037 83671586 - MGP_C57BL6NJ_P0021292 Wdfy1 protein_coding protein_coding MGP_C57BL6NJ_T0021244.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81053365 81213081 - MGP_C57BL6NJ_P0021244 Epha4 protein_coding protein_coding MGP_C57BL6NJ_T0021245.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81053369 81213072 - MGP_C57BL6NJ_P0021245 Epha4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021246.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81059360 81213081 - MGP_C57BL6NJ_P0021246 Epha4 protein_coding protein_coding MGP_C57BL6NJ_T0021247.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81059834 81065503 - MGP_C57BL6NJ_P0021247 Epha4 protein_coding protein_coding MGP_C57BL6NJ_T0021248.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81059852 81213072 - MGP_C57BL6NJ_P0021248 Epha4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021249.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81085853 81213078 - Epha4 protein_coding retained_intron MGP_C57BL6NJ_T0021250.1 MGP_C57BL6NJ_G0016586.1 mouse_genomes_project 1 81090511 81213076 - MGP_C57BL6NJ_P0021250 Epha4 protein_coding protein_coding MGP_C57BL6NJ_T0012357.1 MGP_C57BL6NJ_G0010402.1 mouse_genomes_project 1 66311007 66311511 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009739.1 MGP_C57BL6NJ_G0007824.1 mouse_genomes_project 1 178694064 178694120 - Gm25911 miRNA miRNA MGP_C57BL6NJ_T0011510.1 MGP_C57BL6NJ_G0009595.1 mouse_genomes_project 1 94678980 94679291 + Gm26037 misc_RNA misc_RNA MGP_C57BL6NJ_T0006133.1 MGP_C57BL6NJ_G0005136.1 mouse_genomes_project 1 175788240 175814458 - lincRNA lincRNA MGP_C57BL6NJ_T0023925.1 MGP_C57BL6NJ_G0017159.1 mouse_genomes_project 1 183031274 183044772 + MGP_C57BL6NJ_P0023925 Pfdn2 protein_coding protein_coding MGP_C57BL6NJ_T0023926.1 MGP_C57BL6NJ_G0017159.1 mouse_genomes_project 1 183031334 183043920 + MGP_C57BL6NJ_P0023926 Pfdn2 protein_coding protein_coding MGP_C57BL6NJ_T0023927.1 MGP_C57BL6NJ_G0017159.1 mouse_genomes_project 1 183041907 183043488 + Pfdn2 protein_coding processed_transcript MGP_C57BL6NJ_T0000744.1 MGP_C57BL6NJ_G0000660.1 mouse_genomes_project 1 136264720 136269938 - TEC TEC MGP_C57BL6NJ_T0021641.1 MGP_C57BL6NJ_G0016669.1 mouse_genomes_project 1 92770203 92993944 + MGP_C57BL6NJ_P0021641 Ugt1a10 protein_coding protein_coding MGP_C57BL6NJ_T0021642.1 MGP_C57BL6NJ_G0016669.1 mouse_genomes_project 1 92770226 92996661 + MGP_C57BL6NJ_P0021642 Ugt1a10 protein_coding protein_coding MGP_C57BL6NJ_T0021643.1 MGP_C57BL6NJ_G0016669.1 mouse_genomes_project 1 92770296 92993876 + MGP_C57BL6NJ_P0021643 Ugt1a10 protein_coding protein_coding MGP_C57BL6NJ_T0099598.1 MGP_C57BL6NJ_G0037644.1 mouse_genomes_project 1 69704724 69704787 + Gm27934 snRNA snRNA MGP_C57BL6NJ_T0024133.1 MGP_C57BL6NJ_G0017217.1 mouse_genomes_project 1 186027494 186042666 - MGP_C57BL6NJ_P0024133 Ifi202b protein_coding protein_coding MGP_C57BL6NJ_T0021507.1 MGP_C57BL6NJ_G0016644.1 mouse_genomes_project 1 91165579 91205988 - Pde6d protein_coding retained_intron MGP_C57BL6NJ_T0021508.1 MGP_C57BL6NJ_G0016644.1 mouse_genomes_project 1 91165579 91205988 - MGP_C57BL6NJ_P0021508 Pde6d protein_coding protein_coding MGP_C57BL6NJ_T0021509.1 MGP_C57BL6NJ_G0016644.1 mouse_genomes_project 1 91165607 91206070 - MGP_C57BL6NJ_P0021509 Pde6d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021510.1 MGP_C57BL6NJ_G0016644.1 mouse_genomes_project 1 91166105 91205958 - Pde6d protein_coding processed_transcript MGP_C57BL6NJ_T0021511.1 MGP_C57BL6NJ_G0016644.1 mouse_genomes_project 1 91167977 91205988 - MGP_C57BL6NJ_P0021511 Pde6d protein_coding protein_coding MGP_C57BL6NJ_T0012513.1 MGP_C57BL6NJ_G0010558.1 mouse_genomes_project 1 127262154 127262517 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003078.1 MGP_C57BL6NJ_G0002884.1 mouse_genomes_project 1 173188106 173196042 + Dnm3os antisense antisense MGP_C57BL6NJ_T0003079.1 MGP_C57BL6NJ_G0002884.1 mouse_genomes_project 1 173188106 173196040 + Dnm3os antisense antisense MGP_C57BL6NJ_T0003080.1 MGP_C57BL6NJ_G0002884.1 mouse_genomes_project 1 173188147 173192595 + Dnm3os antisense antisense MGP_C57BL6NJ_T0000889.1 MGP_C57BL6NJ_G0000803.1 mouse_genomes_project 1 189840199 189841430 - TEC TEC MGP_C57BL6NJ_T0003117.1 MGP_C57BL6NJ_G0002913.1 mouse_genomes_project 1 193485880 193530407 - antisense antisense MGP_C57BL6NJ_T0000735.1 MGP_C57BL6NJ_G0000651.1 mouse_genomes_project 1 132236494 132240159 - TEC TEC MGP_C57BL6NJ_T0012475.1 MGP_C57BL6NJ_G0010520.1 mouse_genomes_project 1 113504319 113505162 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020410.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60640053 60654343 - MGP_C57BL6NJ_P0020410 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020411.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60640053 60654338 - MGP_C57BL6NJ_P0020411 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020412.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60640056 60654395 - MGP_C57BL6NJ_P0020412 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020413.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60640079 60641245 - Ppil3 protein_coding processed_transcript MGP_C57BL6NJ_T0020414.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60642846 60654278 - MGP_C57BL6NJ_P0020414 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020415.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60643474 60654348 - MGP_C57BL6NJ_P0020415 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020416.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60643478 60654391 - MGP_C57BL6NJ_P0020416 Ppil3 protein_coding protein_coding MGP_C57BL6NJ_T0020417.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60647092 60654085 - Ppil3 protein_coding retained_intron MGP_C57BL6NJ_T0020418.1 MGP_C57BL6NJ_G0016442.1 mouse_genomes_project 1 60647746 60649877 - Ppil3 protein_coding retained_intron MGP_C57BL6NJ_T0019668.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318414 34329887 + MGP_C57BL6NJ_P0019668 Imp4 protein_coding protein_coding MGP_C57BL6NJ_T0019669.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318461 34323100 + Imp4 protein_coding retained_intron MGP_C57BL6NJ_T0019670.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318468 34324387 + MGP_C57BL6NJ_P0019670 Imp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019671.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318468 34324918 + MGP_C57BL6NJ_P0019671 Imp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019672.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318500 34324558 + Imp4 protein_coding processed_transcript MGP_C57BL6NJ_T0019673.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318516 34323986 + Imp4 protein_coding processed_transcript MGP_C57BL6NJ_T0019674.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34318604 34325045 + MGP_C57BL6NJ_P0019674 Imp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019675.1 MGP_C57BL6NJ_G0016299.1 mouse_genomes_project 1 34328777 34329469 + Imp4 protein_coding processed_transcript MGP_C57BL6NJ_T0019586.1 MGP_C57BL6NJ_G0016285.1 mouse_genomes_project 1 28064296 28068428 - MGP_C57BL6NJ_P0019586 Gm597 protein_coding protein_coding MGP_C57BL6NJ_T0099644.1 MGP_C57BL6NJ_G0037690.1 mouse_genomes_project 1 178702497 178702604 + Gm24182 snRNA snRNA MGP_C57BL6NJ_T0000503.1 MGP_C57BL6NJ_G0000422.1 mouse_genomes_project 1 8066362 8069107 - TEC TEC MGP_C57BL6NJ_T0000781.1 MGP_C57BL6NJ_G0000696.1 mouse_genomes_project 1 146918418 146921441 + TEC TEC MGP_C57BL6NJ_T0000782.1 MGP_C57BL6NJ_G0000696.1 mouse_genomes_project 1 146919337 146921441 + TEC TEC MGP_C57BL6NJ_T0011512.1 MGP_C57BL6NJ_G0009597.1 mouse_genomes_project 1 110717885 110718215 + Gm23537 misc_RNA misc_RNA MGP_C57BL6NJ_T0000927.1 MGP_C57BL6NJ_G0000839.1 mouse_genomes_project 1 205538595 205538728 + TEC TEC MGP_C57BL6NJ_T0006130.1 MGP_C57BL6NJ_G0005133.1 mouse_genomes_project 1 175588970 175590518 + Gm32391 lincRNA lincRNA MGP_C57BL6NJ_T0022591.1 MGP_C57BL6NJ_G0016889.1 mouse_genomes_project 1 141957785 141969405 + MGP_C57BL6NJ_P0022591 Ren1 protein_coding protein_coding MGP_C57BL6NJ_T0022592.1 MGP_C57BL6NJ_G0016889.1 mouse_genomes_project 1 141959184 141961552 + MGP_C57BL6NJ_P0022592 Ren1 protein_coding protein_coding MGP_C57BL6NJ_T0003068.1 MGP_C57BL6NJ_G0002876.1 mouse_genomes_project 1 169169982 169242593 - Gm37679 antisense antisense MGP_C57BL6NJ_T0102699.1 MGP_C57BL6NJ_G0040494.1 mouse_genomes_project 1 186238323 186239214 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006213.1 MGP_C57BL6NJ_G0005197.1 mouse_genomes_project 1 204317674 204319660 + Gm31373 lincRNA lincRNA MGP_C57BL6NJ_T0000769.1 MGP_C57BL6NJ_G0000684.1 mouse_genomes_project 1 143538102 143540193 - TEC TEC MGP_C57BL6NJ_T0102691.1 MGP_C57BL6NJ_G0040486.1 mouse_genomes_project 1 184975758 184976959 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019676.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34340195 34341490 + Ptpn18 protein_coding retained_intron MGP_C57BL6NJ_T0019677.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34340198 34360193 + MGP_C57BL6NJ_P0019677 Ptpn18 protein_coding protein_coding MGP_C57BL6NJ_T0019678.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34340210 34358339 + MGP_C57BL6NJ_P0019678 Ptpn18 protein_coding protein_coding MGP_C57BL6NJ_T0019679.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34340225 34358338 + Ptpn18 protein_coding retained_intron MGP_C57BL6NJ_T0019680.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34343704 34347265 + Ptpn18 protein_coding retained_intron MGP_C57BL6NJ_T0019681.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34359128 34362142 + MGP_C57BL6NJ_P0019681 Ptpn18 protein_coding protein_coding MGP_C57BL6NJ_T0019682.1 MGP_C57BL6NJ_G0016300.1 mouse_genomes_project 1 34360907 34362142 + Ptpn18 protein_coding processed_transcript MGP_C57BL6NJ_T0024469.1 MGP_C57BL6NJ_G0017299.1 mouse_genomes_project 1 195713152 195736782 + MGP_C57BL6NJ_P0024469 Tlr5 protein_coding protein_coding MGP_C57BL6NJ_T0024470.1 MGP_C57BL6NJ_G0017299.1 mouse_genomes_project 1 195713152 195737129 + MGP_C57BL6NJ_P0024470 Tlr5 protein_coding protein_coding MGP_C57BL6NJ_T0024471.1 MGP_C57BL6NJ_G0017299.1 mouse_genomes_project 1 195713186 195730801 + Tlr5 protein_coding processed_transcript MGP_C57BL6NJ_T0024472.1 MGP_C57BL6NJ_G0017299.1 mouse_genomes_project 1 195713192 195730565 + Tlr5 protein_coding processed_transcript MGP_C57BL6NJ_T0024473.1 MGP_C57BL6NJ_G0017299.1 mouse_genomes_project 1 195733266 195737084 + MGP_C57BL6NJ_P0024473 Tlr5 protein_coding protein_coding MGP_C57BL6NJ_T0012606.1 MGP_C57BL6NJ_G0010651.1 mouse_genomes_project 1 172216441 172217638 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005992.1 MGP_C57BL6NJ_G0005022.1 mouse_genomes_project 1 95311374 95314829 + Gm28723 lincRNA lincRNA MGP_C57BL6NJ_T0024356.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106355 193158085 + MGP_C57BL6NJ_P0024356 Lin9 protein_coding protein_coding MGP_C57BL6NJ_T0024357.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106539 193158092 + MGP_C57BL6NJ_P0024357 Lin9 protein_coding protein_coding MGP_C57BL6NJ_T0024358.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106558 193149008 + Lin9 protein_coding retained_intron MGP_C57BL6NJ_T0024359.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106560 193114399 + Lin9 protein_coding processed_transcript MGP_C57BL6NJ_T0024360.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106565 193158085 + MGP_C57BL6NJ_P0024360 Lin9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024361.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193106571 193141190 + Lin9 protein_coding retained_intron MGP_C57BL6NJ_T0024362.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193126776 193140242 + MGP_C57BL6NJ_P0024362 Lin9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024363.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193146092 193156258 + Lin9 protein_coding retained_intron MGP_C57BL6NJ_T0024364.1 MGP_C57BL6NJ_G0017271.1 mouse_genomes_project 1 193148268 193158085 + Lin9 protein_coding retained_intron MGP_C57BL6NJ_T0006226.1 MGP_C57BL6NJ_G0005208.1 mouse_genomes_project 1 208566843 208567194 - Gm37027 lincRNA lincRNA MGP_C57BL6NJ_T0005831.1 MGP_C57BL6NJ_G0004904.1 mouse_genomes_project 1 30576404 30652352 - lincRNA lincRNA MGP_C57BL6NJ_T0006113.1 MGP_C57BL6NJ_G0005121.1 mouse_genomes_project 1 165972667 165980958 - Gm5532 lincRNA lincRNA MGP_C57BL6NJ_T0006114.1 MGP_C57BL6NJ_G0005121.1 mouse_genomes_project 1 165978854 165980990 - Gm5532 lincRNA lincRNA MGP_C57BL6NJ_T0009720.1 MGP_C57BL6NJ_G0007805.1 mouse_genomes_project 1 139951152 139951316 - Gm24273 miRNA miRNA MGP_C57BL6NJ_T0000718.1 MGP_C57BL6NJ_G0000634.1 mouse_genomes_project 1 117619210 117621969 - TEC TEC MGP_C57BL6NJ_T0005829.1 MGP_C57BL6NJ_G0004902.1 mouse_genomes_project 1 27083013 27101884 + Gm5524 lincRNA lincRNA MGP_C57BL6NJ_T0021615.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92509703 + Sag protein_coding retained_intron MGP_C57BL6NJ_T0021616.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92523444 + Sag protein_coding retained_intron MGP_C57BL6NJ_T0021617.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92523930 + Sag protein_coding retained_intron MGP_C57BL6NJ_T0021618.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92499295 + Sag protein_coding retained_intron MGP_C57BL6NJ_T0021619.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92536005 + MGP_C57BL6NJ_P0021619 Sag protein_coding protein_coding MGP_C57BL6NJ_T0021620.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92483380 92536140 + MGP_C57BL6NJ_P0021620 Sag protein_coding protein_coding MGP_C57BL6NJ_T0021621.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92493595 92508799 + Sag protein_coding processed_transcript MGP_C57BL6NJ_T0021622.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92505588 92508809 + Sag protein_coding processed_transcript MGP_C57BL6NJ_T0021623.1 MGP_C57BL6NJ_G0016665.1 mouse_genomes_project 1 92510890 92523948 + Sag protein_coding retained_intron MGP_C57BL6NJ_T0000530.1 MGP_C57BL6NJ_G0000449.1 mouse_genomes_project 1 21994769 21995492 - TEC TEC MGP_C57BL6NJ_T0000531.1 MGP_C57BL6NJ_G0000449.1 mouse_genomes_project 1 21995071 21995491 - TEC TEC MGP_C57BL6NJ_T0100920.1 MGP_C57BL6NJ_G0038966.1 mouse_genomes_project 1 171744084 171744205 - Gm24988 snoRNA snoRNA MGP_C57BL6NJ_T0000845.1 MGP_C57BL6NJ_G0000759.1 mouse_genomes_project 1 171498639 171500919 - TEC TEC MGP_C57BL6NJ_T0002944.1 MGP_C57BL6NJ_G0002783.1 mouse_genomes_project 1 44490415 44492350 - Gm29155 antisense antisense MGP_C57BL6NJ_T0002945.1 MGP_C57BL6NJ_G0002783.1 mouse_genomes_project 1 44492038 44492307 - Gm29155 antisense antisense MGP_C57BL6NJ_T0021337.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872468 86899960 + MGP_C57BL6NJ_P0021337 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021338.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872496 86883085 + Mff protein_coding processed_transcript MGP_C57BL6NJ_T0021339.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872497 86899957 + MGP_C57BL6NJ_P0021339 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021340.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872503 86899960 + MGP_C57BL6NJ_P0021340 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021341.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872512 86884306 + Mff protein_coding retained_intron MGP_C57BL6NJ_T0021342.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872513 86899970 + MGP_C57BL6NJ_P0021342 Mff protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021343.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872518 86899920 + MGP_C57BL6NJ_P0021343 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021344.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86872526 86899964 + MGP_C57BL6NJ_P0021344 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021345.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86876806 86899960 + MGP_C57BL6NJ_P0021345 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021346.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86876849 86899211 + MGP_C57BL6NJ_P0021346 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021347.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86876903 86889462 + MGP_C57BL6NJ_P0021347 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021348.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86876903 86898151 + MGP_C57BL6NJ_P0021348 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021349.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86883047 86899728 + MGP_C57BL6NJ_P0021349 Mff protein_coding protein_coding MGP_C57BL6NJ_T0021350.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86889216 86899289 + Mff protein_coding retained_intron MGP_C57BL6NJ_T0021351.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86889555 86893473 + Mff protein_coding retained_intron MGP_C57BL6NJ_T0021352.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86894500 86899456 + Mff protein_coding retained_intron MGP_C57BL6NJ_T0021353.1 MGP_C57BL6NJ_G0016609.1 mouse_genomes_project 1 86895958 86899298 + Mff protein_coding retained_intron MGP_C57BL6NJ_T0009700.1 MGP_C57BL6NJ_G0007785.1 mouse_genomes_project 1 89007991 89008068 + Mir5126 miRNA miRNA MGP_C57BL6NJ_T0002960.1 MGP_C57BL6NJ_G0002795.1 mouse_genomes_project 1 61851381 61871250 - Gm28411 antisense antisense MGP_C57BL6NJ_T0002962.1 MGP_C57BL6NJ_G0002795.1 mouse_genomes_project 1 61863675 61871983 - Gm28411 antisense antisense MGP_C57BL6NJ_T0000745.1 MGP_C57BL6NJ_G0000661.1 mouse_genomes_project 1 136301156 136303652 + TEC TEC MGP_C57BL6NJ_T0000778.1 MGP_C57BL6NJ_G0000693.1 mouse_genomes_project 1 146792548 146792843 + TEC TEC MGP_C57BL6NJ_T0019483.1 MGP_C57BL6NJ_G0016258.1 mouse_genomes_project 1 17480102 17544314 + MGP_C57BL6NJ_P0019483 Tfap2d protein_coding protein_coding MGP_C57BL6NJ_T0019484.1 MGP_C57BL6NJ_G0016258.1 mouse_genomes_project 1 17484317 17524181 + Tfap2d protein_coding processed_transcript MGP_C57BL6NJ_T0100845.1 MGP_C57BL6NJ_G0038891.1 mouse_genomes_project 1 8807521 8807649 - Gm24173 snoRNA snoRNA MGP_C57BL6NJ_T0019846.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37645630 37750418 - MGP_C57BL6NJ_P0019846 Mgat4a protein_coding protein_coding MGP_C57BL6NJ_T0019847.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37647935 37754991 - MGP_C57BL6NJ_P0019847 Mgat4a protein_coding protein_coding MGP_C57BL6NJ_T0019848.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37671671 37707542 - MGP_C57BL6NJ_P0019848 Mgat4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019849.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37671674 37707504 - MGP_C57BL6NJ_P0019849 Mgat4a protein_coding protein_coding MGP_C57BL6NJ_T0019850.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37707134 37710247 - Mgat4a protein_coding retained_intron MGP_C57BL6NJ_T0019851.1 MGP_C57BL6NJ_G0016330.1 mouse_genomes_project 1 37747231 37750265 - Mgat4a protein_coding retained_intron MGP_C57BL6NJ_T0022277.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133898103 134893126 - MGP_C57BL6NJ_P0022277 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022278.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133898114 134511668 - MGP_C57BL6NJ_P0022278 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022279.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133898785 133950663 - Nckap5 protein_coding processed_transcript MGP_C57BL6NJ_T0022280.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133899209 134467382 - MGP_C57BL6NJ_P0022280 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022281.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133899209 134732485 - MGP_C57BL6NJ_P0022281 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022282.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 133899426 134009842 - MGP_C57BL6NJ_P0022282 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022283.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 134014613 134026163 - Nckap5 protein_coding processed_transcript MGP_C57BL6NJ_T0022284.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 134229901 134893293 - MGP_C57BL6NJ_P0022284 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022285.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 134265409 134793923 - MGP_C57BL6NJ_P0022285 Nckap5 protein_coding protein_coding MGP_C57BL6NJ_T0022286.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 134550730 134793911 - Nckap5 protein_coding retained_intron MGP_C57BL6NJ_T0022287.1 MGP_C57BL6NJ_G0016822.1 mouse_genomes_project 1 134553231 134892975 - Nckap5 protein_coding retained_intron MGP_C57BL6NJ_T0019425.1 MGP_C57BL6NJ_G0016245.1 mouse_genomes_project 1 14197920 14225878 + MGP_C57BL6NJ_P0019425 Rdh10 protein_coding protein_coding MGP_C57BL6NJ_T0019426.1 MGP_C57BL6NJ_G0016245.1 mouse_genomes_project 1 14222645 14224691 + Rdh10 protein_coding retained_intron MGP_C57BL6NJ_T0003067.1 MGP_C57BL6NJ_G0002875.1 mouse_genomes_project 1 168101385 168118116 - Gm15486 antisense antisense MGP_C57BL6NJ_T0012615.1 MGP_C57BL6NJ_G0010660.1 mouse_genomes_project 1 176714140 176715720 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019244.1 MGP_C57BL6NJ_G0016211.1 mouse_genomes_project 1 4439611 4538773 + MGP_C57BL6NJ_P0019244 Pcmtd1 protein_coding protein_coding MGP_C57BL6NJ_T0019245.1 MGP_C57BL6NJ_G0016211.1 mouse_genomes_project 1 4439665 4526037 + Pcmtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0019246.1 MGP_C57BL6NJ_G0016211.1 mouse_genomes_project 1 4512771 4545522 + MGP_C57BL6NJ_P0019246 Pcmtd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019247.1 MGP_C57BL6NJ_G0016211.1 mouse_genomes_project 1 4520001 4528506 + Pcmtd1 protein_coding retained_intron MGP_C57BL6NJ_T0003005.1 MGP_C57BL6NJ_G0002830.1 mouse_genomes_project 1 98892113 98893430 + Gm28536 antisense antisense MGP_C57BL6NJ_T0006099.1 MGP_C57BL6NJ_G0005110.1 mouse_genomes_project 1 161695100 161696799 - Gm28181 lincRNA lincRNA MGP_C57BL6NJ_T0022297.1 MGP_C57BL6NJ_G0016825.1 mouse_genomes_project 1 135876183 135913981 + MGP_C57BL6NJ_P0022297 Acmsd protein_coding protein_coding MGP_C57BL6NJ_T0022298.1 MGP_C57BL6NJ_G0016825.1 mouse_genomes_project 1 135902767 135913981 + Acmsd protein_coding processed_transcript MGP_C57BL6NJ_T0017489.1 MGP_C57BL6NJ_G0015503.1 mouse_genomes_project 1 140458767 140514149 + Gm29103 processed_transcript processed_transcript MGP_C57BL6NJ_T0019977.1 MGP_C57BL6NJ_G0016357.1 mouse_genomes_project 1 40716931 40721763 + Il1rl2 protein_coding retained_intron MGP_C57BL6NJ_T0019978.1 MGP_C57BL6NJ_G0016357.1 mouse_genomes_project 1 40716948 40758676 + MGP_C57BL6NJ_P0019978 Il1rl2 protein_coding protein_coding MGP_C57BL6NJ_T0019979.1 MGP_C57BL6NJ_G0016357.1 mouse_genomes_project 1 40717011 40760767 + MGP_C57BL6NJ_P0019979 Il1rl2 protein_coding protein_coding MGP_C57BL6NJ_T0019980.1 MGP_C57BL6NJ_G0016357.1 mouse_genomes_project 1 40717932 40721493 + MGP_C57BL6NJ_P0019980 Il1rl2 protein_coding protein_coding MGP_C57BL6NJ_T0005814.1 MGP_C57BL6NJ_G0004888.1 mouse_genomes_project 1 14784803 14789530 + D030040B21Rik lincRNA lincRNA MGP_C57BL6NJ_T0020825.1 MGP_C57BL6NJ_G0016515.1 mouse_genomes_project 1 74190211 74262234 - MGP_C57BL6NJ_P0020825 Bard1 protein_coding protein_coding MGP_C57BL6NJ_T0100929.1 MGP_C57BL6NJ_G0038975.1 mouse_genomes_project 1 171935668 171935745 + Snord47 snoRNA snoRNA MGP_C57BL6NJ_T0021666.1 MGP_C57BL6NJ_G0016681.1 mouse_genomes_project 1 93184361 93274444 + MGP_C57BL6NJ_P0021666 Trpm8 protein_coding protein_coding MGP_C57BL6NJ_T0021667.1 MGP_C57BL6NJ_G0016681.1 mouse_genomes_project 1 93187844 93274886 + MGP_C57BL6NJ_P0021667 Trpm8 protein_coding protein_coding MGP_C57BL6NJ_T0021668.1 MGP_C57BL6NJ_G0016681.1 mouse_genomes_project 1 93203987 93274444 + MGP_C57BL6NJ_P0021668 Trpm8 protein_coding protein_coding MGP_C57BL6NJ_T0011508.1 MGP_C57BL6NJ_G0009593.1 mouse_genomes_project 1 78306749 78306842 + Gm27507 misc_RNA misc_RNA MGP_C57BL6NJ_T0024208.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915488 188994329 - MGP_C57BL6NJ_P0024208 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024209.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915497 188938172 - MGP_C57BL6NJ_P0024209 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024210.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915497 189001169 - MGP_C57BL6NJ_P0024210 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024211.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915498 188979240 - MGP_C57BL6NJ_P0024211 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024212.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915936 188933383 - Cep170 protein_coding retained_intron MGP_C57BL6NJ_T0024213.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188915974 188939355 - MGP_C57BL6NJ_P0024213 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024214.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188916175 188979250 - MGP_C57BL6NJ_P0024214 Cep170 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024215.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188916984 188933032 - MGP_C57BL6NJ_P0024215 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024216.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188917420 188937236 - Cep170 protein_coding processed_transcript MGP_C57BL6NJ_T0024217.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188922317 188924940 - Cep170 protein_coding retained_intron MGP_C57BL6NJ_T0024218.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188955859 188961561 - Cep170 protein_coding retained_intron MGP_C57BL6NJ_T0024219.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188957617 188965603 - MGP_C57BL6NJ_P0024219 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024220.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188961695 189001169 - MGP_C57BL6NJ_P0024220 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0024221.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188974020 188994335 - Cep170 protein_coding retained_intron MGP_C57BL6NJ_T0024222.1 MGP_C57BL6NJ_G0017246.1 mouse_genomes_project 1 188974097 188994329 - MGP_C57BL6NJ_P0024222 Cep170 protein_coding protein_coding MGP_C57BL6NJ_T0000486.1 MGP_C57BL6NJ_G0000405.1 mouse_genomes_project 1 821375 823726 + TEC TEC MGP_C57BL6NJ_T0024260.1 MGP_C57BL6NJ_G0017256.1 mouse_genomes_project 1 190711093 190748024 + Efcab2 protein_coding processed_transcript MGP_C57BL6NJ_T0024261.1 MGP_C57BL6NJ_G0017256.1 mouse_genomes_project 1 190711111 190798347 + MGP_C57BL6NJ_P0024261 Efcab2 protein_coding protein_coding MGP_C57BL6NJ_T0024262.1 MGP_C57BL6NJ_G0017256.1 mouse_genomes_project 1 190757845 190795312 + Efcab2 protein_coding processed_transcript MGP_C57BL6NJ_T0000796.1 MGP_C57BL6NJ_G0000710.1 mouse_genomes_project 1 150588425 150588966 + TEC TEC MGP_C57BL6NJ_T0006177.1 MGP_C57BL6NJ_G0005170.1 mouse_genomes_project 1 195434066 195434565 + Gm37218 lincRNA lincRNA MGP_C57BL6NJ_T0020865.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75970852 + Smarcal1 protein_coding retained_intron MGP_C57BL6NJ_T0020866.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75939724 + Smarcal1 protein_coding retained_intron MGP_C57BL6NJ_T0020867.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75935581 + Smarcal1 protein_coding retained_intron MGP_C57BL6NJ_T0020868.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75977070 + MGP_C57BL6NJ_P0020868 Smarcal1 protein_coding protein_coding MGP_C57BL6NJ_T0020869.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75924299 + MGP_C57BL6NJ_P0020869 Smarcal1 protein_coding protein_coding MGP_C57BL6NJ_T0020870.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921558 75935141 + MGP_C57BL6NJ_P0020870 Smarcal1 protein_coding protein_coding MGP_C57BL6NJ_T0020871.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75921922 75977070 + MGP_C57BL6NJ_P0020871 Smarcal1 protein_coding protein_coding MGP_C57BL6NJ_T0020872.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75923945 75970852 + Smarcal1 protein_coding retained_intron MGP_C57BL6NJ_T0020873.1 MGP_C57BL6NJ_G0016524.1 mouse_genomes_project 1 75961007 75972235 + Smarcal1 protein_coding retained_intron MGP_C57BL6NJ_T0021703.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95833718 95920221 - MGP_C57BL6NJ_P0021703 Col6a3 protein_coding protein_coding MGP_C57BL6NJ_T0021704.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95833718 95920221 - MGP_C57BL6NJ_P0021704 Col6a3 protein_coding protein_coding MGP_C57BL6NJ_T0021705.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95834651 95920202 - MGP_C57BL6NJ_P0021705 Col6a3 protein_coding protein_coding MGP_C57BL6NJ_T0021706.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95835180 95841007 - Col6a3 protein_coding retained_intron MGP_C57BL6NJ_T0021707.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95861703 95879772 - Col6a3 protein_coding retained_intron MGP_C57BL6NJ_T0021708.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95864128 95864958 - Col6a3 protein_coding retained_intron MGP_C57BL6NJ_T0021709.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95872709 95920178 - MGP_C57BL6NJ_P0021709 Col6a3 protein_coding protein_coding MGP_C57BL6NJ_T0021710.1 MGP_C57BL6NJ_G0016692.1 mouse_genomes_project 1 95896172 95920221 - MGP_C57BL6NJ_P0021710 Col6a3 protein_coding protein_coding MGP_C57BL6NJ_T0021868.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98216445 98309461 - MGP_C57BL6NJ_P0021868 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0021869.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98218732 98309470 - MGP_C57BL6NJ_P0021869 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0021870.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98218921 98309590 - MGP_C57BL6NJ_P0021870 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0021871.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98219261 98309486 - MGP_C57BL6NJ_P0021871 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0021872.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98219438 98288747 - MGP_C57BL6NJ_P0021872 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0021873.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98223302 98225690 - MGP_C57BL6NJ_P0021873 Kif1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021874.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98224474 98228187 - Kif1a protein_coding retained_intron MGP_C57BL6NJ_T0021875.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98240017 98309485 - Kif1a protein_coding processed_transcript MGP_C57BL6NJ_T0021876.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98243472 98259531 - MGP_C57BL6NJ_P0021876 Kif1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021877.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98272457 98275084 - Kif1a protein_coding processed_transcript MGP_C57BL6NJ_T0021878.1 MGP_C57BL6NJ_G0016729.1 mouse_genomes_project 1 98284049 98309473 - MGP_C57BL6NJ_P0021878 Kif1a protein_coding protein_coding MGP_C57BL6NJ_T0000572.1 MGP_C57BL6NJ_G0000488.1 mouse_genomes_project 1 34132687 34133934 - TEC TEC MGP_C57BL6NJ_T0019468.1 MGP_C57BL6NJ_G0016252.1 mouse_genomes_project 1 15338896 15359833 + MGP_C57BL6NJ_P0019468 Gdap1 protein_coding protein_coding MGP_C57BL6NJ_T0019469.1 MGP_C57BL6NJ_G0016252.1 mouse_genomes_project 1 15338938 15354307 + Gdap1 protein_coding retained_intron MGP_C57BL6NJ_T0019470.1 MGP_C57BL6NJ_G0016252.1 mouse_genomes_project 1 15339002 15357193 + MGP_C57BL6NJ_P0019470 Gdap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019471.1 MGP_C57BL6NJ_G0016252.1 mouse_genomes_project 1 15353932 15357611 + Gdap1 protein_coding retained_intron MGP_C57BL6NJ_T0023318.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167699359 168011409 - MGP_C57BL6NJ_P0023318 Rasal2 protein_coding protein_coding MGP_C57BL6NJ_T0023319.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167706976 168010748 - MGP_C57BL6NJ_P0023319 Rasal2 protein_coding protein_coding MGP_C57BL6NJ_T0023320.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167743885 167830507 - MGP_C57BL6NJ_P0023320 Rasal2 protein_coding protein_coding MGP_C57BL6NJ_T0023321.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167744078 167843053 - MGP_C57BL6NJ_P0023321 Rasal2 protein_coding protein_coding MGP_C57BL6NJ_T0023322.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167747005 167749348 - Rasal2 protein_coding processed_transcript MGP_C57BL6NJ_T0023323.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167747005 167812658 - MGP_C57BL6NJ_P0023323 Rasal2 protein_coding protein_coding MGP_C57BL6NJ_T0023324.1 MGP_C57BL6NJ_G0017034.1 mouse_genomes_project 1 167873315 168011409 - Rasal2 protein_coding retained_intron MGP_C57BL6NJ_T0023890.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955329 182961362 - MGP_C57BL6NJ_P0023890 Usp21 protein_coding protein_coding MGP_C57BL6NJ_T0023891.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955333 182961295 - MGP_C57BL6NJ_P0023891 Usp21 protein_coding protein_coding MGP_C57BL6NJ_T0023892.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955342 182956291 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023893.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955342 182961326 - MGP_C57BL6NJ_P0023893 Usp21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023894.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955342 182961332 - MGP_C57BL6NJ_P0023894 Usp21 protein_coding protein_coding MGP_C57BL6NJ_T0023895.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182955677 182956551 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023896.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182956183 182957958 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023897.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182956415 182957370 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023898.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182956791 182958985 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023899.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182956903 182960321 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023900.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182957833 182961330 - Usp21 protein_coding retained_intron MGP_C57BL6NJ_T0023901.1 MGP_C57BL6NJ_G0017155.1 mouse_genomes_project 1 182958302 182960177 - MGP_C57BL6NJ_P0023901 Usp21 protein_coding protein_coding MGP_C57BL6NJ_T0023183.1 MGP_C57BL6NJ_G0017013.1 mouse_genomes_project 1 165545218 165564433 - MGP_C57BL6NJ_P0023183 Mr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023184.1 MGP_C57BL6NJ_G0017013.1 mouse_genomes_project 1 165545815 165551988 - Mr1 protein_coding retained_intron MGP_C57BL6NJ_T0023185.1 MGP_C57BL6NJ_G0017013.1 mouse_genomes_project 1 165545819 165564412 - MGP_C57BL6NJ_P0023185 Mr1 protein_coding protein_coding MGP_C57BL6NJ_T0023186.1 MGP_C57BL6NJ_G0017013.1 mouse_genomes_project 1 165546772 165564433 - MGP_C57BL6NJ_P0023186 Mr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023187.1 MGP_C57BL6NJ_G0017013.1 mouse_genomes_project 1 165553753 165564443 - Mr1 protein_coding retained_intron MGP_C57BL6NJ_T0022995.1 MGP_C57BL6NJ_G0016976.1 mouse_genomes_project 1 160079478 160089284 + MGP_C57BL6NJ_P0022995 Ptgs2 protein_coding protein_coding MGP_C57BL6NJ_T0022996.1 MGP_C57BL6NJ_G0016976.1 mouse_genomes_project 1 160079779 160080774 + MGP_C57BL6NJ_P0022996 Ptgs2 protein_coding protein_coding MGP_C57BL6NJ_T0000766.1 MGP_C57BL6NJ_G0000681.1 mouse_genomes_project 1 142476306 142478004 + TEC TEC MGP_C57BL6NJ_T0019641.1 MGP_C57BL6NJ_G0016296.1 mouse_genomes_project 1 33703220 33758863 - MGP_C57BL6NJ_P0019641 Bend6 protein_coding protein_coding MGP_C57BL6NJ_T0019642.1 MGP_C57BL6NJ_G0016296.1 mouse_genomes_project 1 33703220 33734733 - MGP_C57BL6NJ_P0019642 Bend6 protein_coding protein_coding MGP_C57BL6NJ_T0019643.1 MGP_C57BL6NJ_G0016296.1 mouse_genomes_project 1 33713887 33734653 - Bend6 protein_coding processed_transcript MGP_C57BL6NJ_T0019644.1 MGP_C57BL6NJ_G0016296.1 mouse_genomes_project 1 33714348 33735015 - Bend6 protein_coding retained_intron MGP_C57BL6NJ_T0019645.1 MGP_C57BL6NJ_G0016296.1 mouse_genomes_project 1 33724944 33734663 - Bend6 protein_coding processed_transcript MGP_C57BL6NJ_T0012302.1 MGP_C57BL6NJ_G0010347.1 mouse_genomes_project 1 50636263 50637256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005989.1 MGP_C57BL6NJ_G0005019.1 mouse_genomes_project 1 94334562 94381759 - C030007H22Rik lincRNA lincRNA MGP_C57BL6NJ_T0012151.1 MGP_C57BL6NJ_G0010196.1 mouse_genomes_project 1 4687537 4688549 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000575.1 MGP_C57BL6NJ_G0000491.1 mouse_genomes_project 1 36597015 36599174 + TEC TEC MGP_C57BL6NJ_T0099284.1 MGP_C57BL6NJ_G0037348.1 mouse_genomes_project 1 715169 726729 - Gm19938 sense_intronic sense_intronic MGP_C57BL6NJ_T0022868.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147068620 147133022 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022869.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147069166 147200195 - MGP_C57BL6NJ_P0022869 Ptprc protein_coding protein_coding MGP_C57BL6NJ_T0022870.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147069172 147200156 - MGP_C57BL6NJ_P0022870 Ptprc protein_coding protein_coding MGP_C57BL6NJ_T0022871.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147069179 147200189 - MGP_C57BL6NJ_P0022871 Ptprc protein_coding protein_coding MGP_C57BL6NJ_T0022872.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147128610 147132055 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022873.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147128832 147200123 - MGP_C57BL6NJ_P0022873 Ptprc protein_coding protein_coding MGP_C57BL6NJ_T0022874.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147133917 147137317 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022875.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147134418 147200189 - MGP_C57BL6NJ_P0022875 Ptprc protein_coding protein_coding MGP_C57BL6NJ_T0022876.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147136069 147200188 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022877.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147142741 147200185 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022878.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147149412 147200591 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022879.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147196865 147200078 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0022880.1 MGP_C57BL6NJ_G0016949.1 mouse_genomes_project 1 147197632 147200138 - Ptprc protein_coding retained_intron MGP_C57BL6NJ_T0024096.1 MGP_C57BL6NJ_G0017207.1 mouse_genomes_project 1 185235443 185237308 - Ackr1 protein_coding processed_transcript MGP_C57BL6NJ_T0024097.1 MGP_C57BL6NJ_G0017207.1 mouse_genomes_project 1 185235447 185237060 - MGP_C57BL6NJ_P0024097 Ackr1 protein_coding protein_coding MGP_C57BL6NJ_T0024098.1 MGP_C57BL6NJ_G0017207.1 mouse_genomes_project 1 185235449 185237231 - MGP_C57BL6NJ_P0024098 Ackr1 protein_coding protein_coding MGP_C57BL6NJ_T0022640.1 MGP_C57BL6NJ_G0016901.1 mouse_genomes_project 1 142745773 142749724 - MGP_C57BL6NJ_P0022640 Btg2 protein_coding protein_coding MGP_C57BL6NJ_T0012367.1 MGP_C57BL6NJ_G0010412.1 mouse_genomes_project 1 68332037 68332350 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012295.1 MGP_C57BL6NJ_G0010340.1 mouse_genomes_project 1 49199400 49200227 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021815.1 MGP_C57BL6NJ_G0016713.1 mouse_genomes_project 1 97668204 97677049 - MGP_C57BL6NJ_P0021815 Olfr1414 protein_coding protein_coding MGP_C57BL6NJ_T0021816.1 MGP_C57BL6NJ_G0016713.1 mouse_genomes_project 1 97668204 97677115 - MGP_C57BL6NJ_P0021816 Olfr1414 protein_coding protein_coding MGP_C57BL6NJ_T0023388.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171025292 171171024 - MGP_C57BL6NJ_P0023388 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023389.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171032166 171037992 - Rabgap1l protein_coding retained_intron MGP_C57BL6NJ_T0023390.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171032682 171061851 - MGP_C57BL6NJ_P0023390 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023391.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171032734 171124363 - MGP_C57BL6NJ_P0023391 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023392.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171032784 171100725 - Rabgap1l protein_coding processed_transcript MGP_C57BL6NJ_T0023393.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171046862 171058406 - Rabgap1l protein_coding retained_intron MGP_C57BL6NJ_T0023394.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171058389 171061166 - Rabgap1l protein_coding processed_transcript MGP_C57BL6NJ_T0023395.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171069385 171126195 - MGP_C57BL6NJ_P0023395 Rabgap1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023396.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171069746 171255211 - MGP_C57BL6NJ_P0023396 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023397.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171070018 171663592 - MGP_C57BL6NJ_P0023397 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023398.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171097268 171100912 - Rabgap1l protein_coding processed_transcript MGP_C57BL6NJ_T0023399.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171101991 171110385 - Rabgap1l protein_coding processed_transcript MGP_C57BL6NJ_T0023400.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171105432 171124801 - Rabgap1l protein_coding processed_transcript MGP_C57BL6NJ_T0023401.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171254943 171269127 - Rabgap1l protein_coding retained_intron MGP_C57BL6NJ_T0023402.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171461029 171627612 - MGP_C57BL6NJ_P0023402 Rabgap1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0023403.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171525588 171663584 - MGP_C57BL6NJ_P0023403 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0023404.1 MGP_C57BL6NJ_G0017046.1 mouse_genomes_project 1 171597789 171663857 - MGP_C57BL6NJ_P0023404 Rabgap1l protein_coding protein_coding MGP_C57BL6NJ_T0022692.1 MGP_C57BL6NJ_G0016913.1 mouse_genomes_project 1 143194400 143212484 + MGP_C57BL6NJ_P0022692 Rabif protein_coding protein_coding MGP_C57BL6NJ_T0020045.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687144 44716756 + Tpp2 protein_coding processed_transcript MGP_C57BL6NJ_T0020046.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687504 44773868 + MGP_C57BL6NJ_P0020046 Tpp2 protein_coding protein_coding MGP_C57BL6NJ_T0020047.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687511 44724352 + Tpp2 protein_coding retained_intron MGP_C57BL6NJ_T0020048.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687512 44724352 + Tpp2 protein_coding retained_intron MGP_C57BL6NJ_T0020049.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687512 44773897 + MGP_C57BL6NJ_P0020049 Tpp2 protein_coding protein_coding MGP_C57BL6NJ_T0020050.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687530 44761634 + MGP_C57BL6NJ_P0020050 Tpp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020051.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44687542 44761615 + MGP_C57BL6NJ_P0020051 Tpp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020052.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44742156 44748125 + MGP_C57BL6NJ_P0020052 Tpp2 protein_coding protein_coding MGP_C57BL6NJ_T0020053.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44754324 44773897 + MGP_C57BL6NJ_P0020053 Tpp2 protein_coding protein_coding MGP_C57BL6NJ_T0020054.1 MGP_C57BL6NJ_G0016374.1 mouse_genomes_project 1 44771163 44773233 + Tpp2 protein_coding retained_intron MGP_C57BL6NJ_T0012635.1 MGP_C57BL6NJ_G0010680.1 mouse_genomes_project 1 183444971 183445523 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012518.1 MGP_C57BL6NJ_G0010563.1 mouse_genomes_project 1 129077133 129077352 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005887.1 MGP_C57BL6NJ_G0004942.1 mouse_genomes_project 1 53169641 53174885 - Gm17767 lincRNA lincRNA MGP_C57BL6NJ_T0005888.1 MGP_C57BL6NJ_G0004942.1 mouse_genomes_project 1 53172060 53273258 - Gm17767 lincRNA lincRNA MGP_C57BL6NJ_T0017514.1 MGP_C57BL6NJ_G0015511.1 mouse_genomes_project 1 160048063 160079265 - Ptgs2os processed_transcript antisense MGP_C57BL6NJ_T0017515.1 MGP_C57BL6NJ_G0015511.1 mouse_genomes_project 1 160077628 160079411 - Ptgs2os processed_transcript retained_intron MGP_C57BL6NJ_T0099647.1 MGP_C57BL6NJ_G0037693.1 mouse_genomes_project 1 182404805 182404912 - Gm25235 snRNA snRNA MGP_C57BL6NJ_T0006179.1 MGP_C57BL6NJ_G0005172.1 mouse_genomes_project 1 196166320 196166703 + Gm37986 lincRNA lincRNA MGP_C57BL6NJ_T0012228.1 MGP_C57BL6NJ_G0010273.1 mouse_genomes_project 1 30733478 30733703 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002908.1 MGP_C57BL6NJ_G0002754.1 mouse_genomes_project 1 15851308 15878432 - Gm28154 antisense antisense MGP_C57BL6NJ_T0100864.1 MGP_C57BL6NJ_G0038910.1 mouse_genomes_project 1 43558678 43558812 - Gm23126 snoRNA snoRNA MGP_C57BL6NJ_T0020322.1 MGP_C57BL6NJ_G0016424.1 mouse_genomes_project 1 57165418 57225458 - MGP_C57BL6NJ_P0020322 Rftn2 protein_coding protein_coding MGP_C57BL6NJ_T0020323.1 MGP_C57BL6NJ_G0016424.1 mouse_genomes_project 1 57167007 57225458 - MGP_C57BL6NJ_P0020323 Rftn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020324.1 MGP_C57BL6NJ_G0016424.1 mouse_genomes_project 1 57200645 57225458 - MGP_C57BL6NJ_P0020324 Rftn2 protein_coding protein_coding MGP_C57BL6NJ_T0020325.1 MGP_C57BL6NJ_G0016424.1 mouse_genomes_project 1 57202939 57205300 - Rftn2 protein_coding processed_transcript MGP_C57BL6NJ_T0020326.1 MGP_C57BL6NJ_G0016424.1 mouse_genomes_project 1 57222617 57225458 - Rftn2 protein_coding processed_transcript MGP_C57BL6NJ_T0003086.1 MGP_C57BL6NJ_G0002889.1 mouse_genomes_project 1 176714509 176715886 - Gm38325 antisense antisense MGP_C57BL6NJ_T0022696.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143276744 143358736 + MGP_C57BL6NJ_P0022696 Kdm5b protein_coding protein_coding MGP_C57BL6NJ_T0022697.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143276765 143354965 + MGP_C57BL6NJ_P0022697 Kdm5b protein_coding protein_coding MGP_C57BL6NJ_T0022698.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143276780 143330234 + Kdm5b protein_coding retained_intron MGP_C57BL6NJ_T0022699.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143276871 143356341 + MGP_C57BL6NJ_P0022699 Kdm5b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022700.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143311391 143314101 + Kdm5b protein_coding retained_intron MGP_C57BL6NJ_T0022701.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143345322 143348544 + Kdm5b protein_coding retained_intron MGP_C57BL6NJ_T0022702.1 MGP_C57BL6NJ_G0016915.1 mouse_genomes_project 1 143346242 143350644 + Kdm5b protein_coding retained_intron MGP_C57BL6NJ_T0000786.1 MGP_C57BL6NJ_G0000700.1 mouse_genomes_project 1 147186625 147192528 - TEC TEC MGP_C57BL6NJ_T0024086.1 MGP_C57BL6NJ_G0017200.1 mouse_genomes_project 1 184780189 184781625 + MGP_C57BL6NJ_P0024086 Olfr16 protein_coding protein_coding MGP_C57BL6NJ_T0019408.1 MGP_C57BL6NJ_G0016239.1 mouse_genomes_project 1 12864213 12911412 - MGP_C57BL6NJ_P0019408 Trpa1 protein_coding protein_coding MGP_C57BL6NJ_T0019689.1 MGP_C57BL6NJ_G0016304.1 mouse_genomes_project 1 34495308 34507189 + MGP_C57BL6NJ_P0019689 Amer3 protein_coding protein_coding MGP_C57BL6NJ_T0019267.1 MGP_C57BL6NJ_G0016217.1 mouse_genomes_project 1 7169044 7197693 + MGP_C57BL6NJ_P0019267 3110035E14Rik protein_coding protein_coding MGP_C57BL6NJ_T0020876.1 MGP_C57BL6NJ_G0016527.1 mouse_genomes_project 1 76203354 76234032 + MGP_C57BL6NJ_P0020876 Igfbp2 protein_coding protein_coding MGP_C57BL6NJ_T0020877.1 MGP_C57BL6NJ_G0016527.1 mouse_genomes_project 1 76230236 76233686 + Igfbp2 protein_coding retained_intron MGP_C57BL6NJ_T0003047.1 MGP_C57BL6NJ_G0002859.1 mouse_genomes_project 1 145051311 145060305 + Gm26568 antisense antisense MGP_C57BL6NJ_T0102383.1 MGP_C57BL6NJ_G0040317.1 mouse_genomes_project 1 90157417 90169696 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0021760.1 MGP_C57BL6NJ_G0016702.1 mouse_genomes_project 1 96455279 96466658 + MGP_C57BL6NJ_P0021760 Klhl30 protein_coding protein_coding MGP_C57BL6NJ_T0012580.1 MGP_C57BL6NJ_G0010625.1 mouse_genomes_project 1 160582353 160582713 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099311.1 MGP_C57BL6NJ_G0037374.1 mouse_genomes_project 1 176435748 176441162 - Gm38190 sense_intronic sense_intronic MGP_C57BL6NJ_T0100875.1 MGP_C57BL6NJ_G0038921.1 mouse_genomes_project 1 62037237 62037321 + Snord11 snoRNA snoRNA MGP_C57BL6NJ_T0009706.1 MGP_C57BL6NJ_G0007791.1 mouse_genomes_project 1 97607491 97607551 - Mir6900 miRNA miRNA MGP_C57BL6NJ_T0021537.1 MGP_C57BL6NJ_G0016653.1 mouse_genomes_project 1 91866534 91867694 + Chrnd protein_coding retained_intron MGP_C57BL6NJ_T0021538.1 MGP_C57BL6NJ_G0016653.1 mouse_genomes_project 1 91866564 91875815 + MGP_C57BL6NJ_P0021538 Chrnd protein_coding protein_coding MGP_C57BL6NJ_T0021539.1 MGP_C57BL6NJ_G0016653.1 mouse_genomes_project 1 91866771 91875814 + MGP_C57BL6NJ_P0021539 Chrnd protein_coding protein_coding MGP_C57BL6NJ_T0000829.1 MGP_C57BL6NJ_G0000743.1 mouse_genomes_project 1 167599090 167601393 + TEC TEC MGP_C57BL6NJ_T0000667.1 MGP_C57BL6NJ_G0000583.1 mouse_genomes_project 1 86465524 86468357 + TEC TEC MGP_C57BL6NJ_T0020441.1 MGP_C57BL6NJ_G0016446.1 mouse_genomes_project 1 60804086 60814615 + MGP_C57BL6NJ_P0020441 Ndufb3 protein_coding protein_coding MGP_C57BL6NJ_T0022253.1 MGP_C57BL6NJ_G0016817.1 mouse_genomes_project 1 131066972 131856097 - MGP_C57BL6NJ_P0022253 Dpp10 protein_coding protein_coding MGP_C57BL6NJ_T0022254.1 MGP_C57BL6NJ_G0016817.1 mouse_genomes_project 1 131080726 131855702 - MGP_C57BL6NJ_P0022254 Dpp10 protein_coding protein_coding MGP_C57BL6NJ_T0022255.1 MGP_C57BL6NJ_G0016817.1 mouse_genomes_project 1 131376236 131421389 - Dpp10 protein_coding processed_transcript MGP_C57BL6NJ_T0022256.1 MGP_C57BL6NJ_G0016817.1 mouse_genomes_project 1 131396116 131855794 - Dpp10 protein_coding processed_transcript MGP_C57BL6NJ_T0006068.1 MGP_C57BL6NJ_G0005085.1 mouse_genomes_project 1 143127865 143133656 + Platr1 lincRNA lincRNA MGP_C57BL6NJ_T0000710.1 MGP_C57BL6NJ_G0000626.1 mouse_genomes_project 1 111156683 111159492 + TEC TEC MGP_C57BL6NJ_T0012395.1 MGP_C57BL6NJ_G0010440.1 mouse_genomes_project 1 83854269 83855170 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009722.1 MGP_C57BL6NJ_G0007807.1 mouse_genomes_project 1 141482217 141482338 - Gm44300 miRNA miRNA MGP_C57BL6NJ_T0024043.1 MGP_C57BL6NJ_G0017187.1 mouse_genomes_project 1 184095194 184104012 - MGP_C57BL6NJ_P0024043 Kcnj9 protein_coding protein_coding MGP_C57BL6NJ_T0024044.1 MGP_C57BL6NJ_G0017187.1 mouse_genomes_project 1 184096780 184103976 - MGP_C57BL6NJ_P0024044 Kcnj9 protein_coding protein_coding MGP_C57BL6NJ_T0024045.1 MGP_C57BL6NJ_G0017187.1 mouse_genomes_project 1 184099998 184102802 - Kcnj9 protein_coding retained_intron MGP_C57BL6NJ_T0009684.1 MGP_C57BL6NJ_G0007769.1 mouse_genomes_project 1 65779131 65779257 + Gm27512 miRNA miRNA MGP_C57BL6NJ_T0022231.1 MGP_C57BL6NJ_G0016812.1 mouse_genomes_project 1 128090097 128095657 + MGP_C57BL6NJ_P0022231 En1 protein_coding protein_coding MGP_C57BL6NJ_T0024516.1 MGP_C57BL6NJ_G0017309.1 mouse_genomes_project 1 197597297 197624602 - MGP_C57BL6NJ_P0024516 Marc1 protein_coding protein_coding MGP_C57BL6NJ_T0024517.1 MGP_C57BL6NJ_G0017309.1 mouse_genomes_project 1 197597306 197624718 - MGP_C57BL6NJ_P0024517 Marc1 protein_coding protein_coding MGP_C57BL6NJ_T0024518.1 MGP_C57BL6NJ_G0017309.1 mouse_genomes_project 1 197597819 197622258 - MGP_C57BL6NJ_P0024518 Marc1 protein_coding protein_coding MGP_C57BL6NJ_T0024519.1 MGP_C57BL6NJ_G0017309.1 mouse_genomes_project 1 197598245 197624534 - MGP_C57BL6NJ_P0024519 Marc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000484.1 MGP_C57BL6NJ_G0000403.1 mouse_genomes_project 1 644297 647309 - TEC TEC MGP_C57BL6NJ_T0002997.1 MGP_C57BL6NJ_G0002822.1 mouse_genomes_project 1 96407906 96423873 - Gm17090 antisense antisense MGP_C57BL6NJ_T0023609.1 MGP_C57BL6NJ_G0017090.1 mouse_genomes_project 1 176100271 176104155 - MGP_C57BL6NJ_P0023609 Xcl1 protein_coding protein_coding MGP_C57BL6NJ_T0012305.1 MGP_C57BL6NJ_G0010350.1 mouse_genomes_project 1 51019683 51020120 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012650.1 MGP_C57BL6NJ_G0010695.1 mouse_genomes_project 1 193891610 193893789 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098792.1 MGP_C57BL6NJ_G0036856.1 mouse_genomes_project 1 34649568 34650517 + pseudogene pseudogene MGP_C57BL6NJ_T0024439.1 MGP_C57BL6NJ_G0017290.1 mouse_genomes_project 1 194829662 194836839 + MGP_C57BL6NJ_P0024439 Srp9 protein_coding protein_coding MGP_C57BL6NJ_T0024440.1 MGP_C57BL6NJ_G0017290.1 mouse_genomes_project 1 194829675 194837327 + MGP_C57BL6NJ_P0024440 Srp9 protein_coding protein_coding MGP_C57BL6NJ_T0024441.1 MGP_C57BL6NJ_G0017290.1 mouse_genomes_project 1 194829706 194833425 + Srp9 protein_coding retained_intron MGP_C57BL6NJ_T0024442.1 MGP_C57BL6NJ_G0017290.1 mouse_genomes_project 1 194835619 194836725 + Srp9 protein_coding retained_intron MGP_C57BL6NJ_T0009718.1 MGP_C57BL6NJ_G0007803.1 mouse_genomes_project 1 126334279 126334360 + Mir6346 miRNA miRNA MGP_C57BL6NJ_T0012143.1 MGP_C57BL6NJ_G0010188.1 mouse_genomes_project 1 4258194 4263072 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022609.1 MGP_C57BL6NJ_G0016894.1 mouse_genomes_project 1 142244240 142293512 - MGP_C57BL6NJ_P0022609 Gm38394 protein_coding protein_coding MGP_C57BL6NJ_T0100903.1 MGP_C57BL6NJ_G0038949.1 mouse_genomes_project 1 130237483 130237627 + Gm25771 snoRNA snoRNA MGP_C57BL6NJ_T0024190.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187986172 188021371 + MGP_C57BL6NJ_P0024190 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024191.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187986385 187994534 + MGP_C57BL6NJ_P0024191 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024192.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187986387 187998321 + MGP_C57BL6NJ_P0024192 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024193.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187986404 187998343 + MGP_C57BL6NJ_P0024193 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024194.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187986774 187998339 + MGP_C57BL6NJ_P0024194 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024195.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 187999141 188007172 + MGP_C57BL6NJ_P0024195 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024196.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 188007622 188016614 + MGP_C57BL6NJ_P0024196 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024197.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 188011984 188016431 + Exo1 protein_coding retained_intron MGP_C57BL6NJ_T0024198.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 188012122 188014078 + MGP_C57BL6NJ_P0024198 Exo1 protein_coding protein_coding MGP_C57BL6NJ_T0024199.1 MGP_C57BL6NJ_G0017243.1 mouse_genomes_project 1 188015450 188016626 + Exo1 protein_coding processed_transcript MGP_C57BL6NJ_T0005953.1 MGP_C57BL6NJ_G0004989.1 mouse_genomes_project 1 77206524 77312432 - Gm29183 lincRNA lincRNA MGP_C57BL6NJ_T0099599.1 MGP_C57BL6NJ_G0037645.1 mouse_genomes_project 1 71317445 71317539 - Gm25542 snRNA snRNA MGP_C57BL6NJ_T0005991.1 MGP_C57BL6NJ_G0005021.1 mouse_genomes_project 1 95286329 95291174 - Gm28721 lincRNA lincRNA MGP_C57BL6NJ_T0006073.1 MGP_C57BL6NJ_G0005090.1 mouse_genomes_project 1 145389094 145403809 + Gm37799 lincRNA lincRNA MGP_C57BL6NJ_T0024149.1 MGP_C57BL6NJ_G0017230.1 mouse_genomes_project 1 186430461 186432811 + MGP_C57BL6NJ_P0024149 protein_coding protein_coding MGP_C57BL6NJ_T0022036.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111778540 111919076 - MGP_C57BL6NJ_P0022036 Pign protein_coding protein_coding MGP_C57BL6NJ_T0022037.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111778544 111923730 - MGP_C57BL6NJ_P0022037 Pign protein_coding protein_coding MGP_C57BL6NJ_T0022038.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111781264 111828130 - Pign protein_coding processed_transcript MGP_C57BL6NJ_T0022039.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111813084 111923711 - MGP_C57BL6NJ_P0022039 Pign protein_coding protein_coding MGP_C57BL6NJ_T0022040.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111817260 111923730 - MGP_C57BL6NJ_P0022040 Pign protein_coding protein_coding MGP_C57BL6NJ_T0022041.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111906696 111923745 - Pign protein_coding retained_intron MGP_C57BL6NJ_T0022042.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111906696 111923744 - Pign protein_coding retained_intron MGP_C57BL6NJ_T0022043.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111906850 111909719 - Pign protein_coding retained_intron MGP_C57BL6NJ_T0022044.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111918326 111923741 - Pign protein_coding retained_intron MGP_C57BL6NJ_T0022045.1 MGP_C57BL6NJ_G0016765.1 mouse_genomes_project 1 111919245 111923740 - Pign protein_coding retained_intron MGP_C57BL6NJ_T0005955.1 MGP_C57BL6NJ_G0004991.1 mouse_genomes_project 1 80016751 80134299 + Gm29069 lincRNA lincRNA MGP_C57BL6NJ_T0012306.1 MGP_C57BL6NJ_G0010351.1 mouse_genomes_project 1 51585715 51587474 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000759.1 MGP_C57BL6NJ_G0000675.1 mouse_genomes_project 1 140404168 140406079 + TEC TEC MGP_C57BL6NJ_T0000804.1 MGP_C57BL6NJ_G0000718.1 mouse_genomes_project 1 157212554 157216864 + TEC TEC MGP_C57BL6NJ_T0005876.1 MGP_C57BL6NJ_G0004932.1 mouse_genomes_project 1 44491369 44491981 + Gm29157 lincRNA lincRNA MGP_C57BL6NJ_T0012420.1 MGP_C57BL6NJ_G0010465.1 mouse_genomes_project 1 92213715 92214775 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024678.1 MGP_C57BL6NJ_G0017340.1 mouse_genomes_project 1 204504951 204507185 - MGP_C57BL6NJ_P0024678 Fam71a protein_coding protein_coding MGP_C57BL6NJ_T0000740.1 MGP_C57BL6NJ_G0000656.1 mouse_genomes_project 1 135348770 135350164 + TEC TEC MGP_C57BL6NJ_T0024474.1 MGP_C57BL6NJ_G0017300.1 mouse_genomes_project 1 195807002 195955986 - MGP_C57BL6NJ_P0024474 Disp1 protein_coding protein_coding MGP_C57BL6NJ_T0024475.1 MGP_C57BL6NJ_G0017300.1 mouse_genomes_project 1 195807002 195874111 - MGP_C57BL6NJ_P0024475 Disp1 protein_coding protein_coding MGP_C57BL6NJ_T0024476.1 MGP_C57BL6NJ_G0017300.1 mouse_genomes_project 1 195807002 195955981 - MGP_C57BL6NJ_P0024476 Disp1 protein_coding protein_coding MGP_C57BL6NJ_T0024477.1 MGP_C57BL6NJ_G0017300.1 mouse_genomes_project 1 195819180 195874181 - Disp1 protein_coding retained_intron MGP_C57BL6NJ_T0024478.1 MGP_C57BL6NJ_G0017300.1 mouse_genomes_project 1 195861661 195956018 - MGP_C57BL6NJ_P0024478 Disp1 protein_coding protein_coding MGP_C57BL6NJ_T0012444.1 MGP_C57BL6NJ_G0010489.1 mouse_genomes_project 1 100760154 100761002 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006139.1 MGP_C57BL6NJ_G0005140.1 mouse_genomes_project 1 176251061 176255152 - 4930568G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006140.1 MGP_C57BL6NJ_G0005140.1 mouse_genomes_project 1 176253654 176280164 - 4930568G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0102378.1 MGP_C57BL6NJ_G0040315.1 mouse_genomes_project 1 19825006 19839467 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102379.1 MGP_C57BL6NJ_G0040315.1 mouse_genomes_project 1 19825368 19839282 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102380.1 MGP_C57BL6NJ_G0040315.1 mouse_genomes_project 1 19831139 19839402 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0003152.1 MGP_C57BL6NJ_G0002939.1 mouse_genomes_project 1 206657124 206681494 + 4930570N18Rik antisense antisense MGP_C57BL6NJ_T0021034.1 MGP_C57BL6NJ_G0016557.1 mouse_genomes_project 1 78447593 78450825 - MGP_C57BL6NJ_P0021034 Cryba2 protein_coding protein_coding MGP_C57BL6NJ_T0021035.1 MGP_C57BL6NJ_G0016557.1 mouse_genomes_project 1 78448190 78450574 - MGP_C57BL6NJ_P0021035 Cryba2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005820.1 MGP_C57BL6NJ_G0004894.1 mouse_genomes_project 1 19331210 19334200 + Gm28065 lincRNA lincRNA MGP_C57BL6NJ_T0000883.1 MGP_C57BL6NJ_G0000797.1 mouse_genomes_project 1 189225168 189227065 - TEC TEC MGP_C57BL6NJ_T0005823.1 MGP_C57BL6NJ_G0004897.1 mouse_genomes_project 1 22030672 22031071 + Gm27028 lincRNA lincRNA MGP_C57BL6NJ_T0000709.1 MGP_C57BL6NJ_G0000625.1 mouse_genomes_project 1 111019078 111023744 + TEC TEC MGP_C57BL6NJ_T0099657.1 MGP_C57BL6NJ_G0037703.1 mouse_genomes_project 1 190963185 190963352 + Gm24405 snRNA snRNA MGP_C57BL6NJ_T0012194.1 MGP_C57BL6NJ_G0010239.1 mouse_genomes_project 1 17404138 17404250 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024229.1 MGP_C57BL6NJ_G0017248.1 mouse_genomes_project 1 189210188 189447901 - MGP_C57BL6NJ_P0024229 Akt3 protein_coding protein_coding MGP_C57BL6NJ_T0024230.1 MGP_C57BL6NJ_G0017248.1 mouse_genomes_project 1 189212230 189447863 - MGP_C57BL6NJ_P0024230 Akt3 protein_coding protein_coding MGP_C57BL6NJ_T0024231.1 MGP_C57BL6NJ_G0017248.1 mouse_genomes_project 1 189212231 189458695 - MGP_C57BL6NJ_P0024231 Akt3 protein_coding protein_coding MGP_C57BL6NJ_T0021301.1 MGP_C57BL6NJ_G0016600.1 mouse_genomes_project 1 84144917 84162262 - MGP_C57BL6NJ_P0021301 Fam124b protein_coding protein_coding MGP_C57BL6NJ_T0021302.1 MGP_C57BL6NJ_G0016600.1 mouse_genomes_project 1 84146536 84166791 - Fam124b protein_coding processed_transcript MGP_C57BL6NJ_T0000611.1 MGP_C57BL6NJ_G0000527.1 mouse_genomes_project 1 61972476 61974348 - TEC TEC MGP_C57BL6NJ_T0023380.1 MGP_C57BL6NJ_G0017043.1 mouse_genomes_project 1 170877207 170947626 - MGP_C57BL6NJ_P0023380 Tnn protein_coding protein_coding MGP_C57BL6NJ_T0023381.1 MGP_C57BL6NJ_G0017043.1 mouse_genomes_project 1 170878146 170941934 - MGP_C57BL6NJ_P0023381 Tnn protein_coding protein_coding MGP_C57BL6NJ_T0000884.1 MGP_C57BL6NJ_G0000798.1 mouse_genomes_project 1 189235282 189236814 - TEC TEC MGP_C57BL6NJ_T0011513.1 MGP_C57BL6NJ_G0009598.1 mouse_genomes_project 1 116359808 116360093 + Gm25293 misc_RNA misc_RNA MGP_C57BL6NJ_T0022913.1 MGP_C57BL6NJ_G0016957.1 mouse_genomes_project 1 148551159 148591492 + MGP_C57BL6NJ_P0022913 Aspm protein_coding protein_coding MGP_C57BL6NJ_T0022914.1 MGP_C57BL6NJ_G0016957.1 mouse_genomes_project 1 148551160 148570686 + Aspm protein_coding retained_intron MGP_C57BL6NJ_T0022915.1 MGP_C57BL6NJ_G0016957.1 mouse_genomes_project 1 148551162 148591495 + MGP_C57BL6NJ_P0022915 Aspm protein_coding protein_coding MGP_C57BL6NJ_T0022916.1 MGP_C57BL6NJ_G0016957.1 mouse_genomes_project 1 148551206 148553522 + Aspm protein_coding retained_intron MGP_C57BL6NJ_T0022917.1 MGP_C57BL6NJ_G0016957.1 mouse_genomes_project 1 148579877 148584800 + Aspm protein_coding processed_transcript MGP_C57BL6NJ_T0023546.1 MGP_C57BL6NJ_G0017073.1 mouse_genomes_project 1 174294277 174363526 - MGP_C57BL6NJ_P0023546 Prrx1 protein_coding protein_coding MGP_C57BL6NJ_T0023547.1 MGP_C57BL6NJ_G0017073.1 mouse_genomes_project 1 174294277 174363488 - MGP_C57BL6NJ_P0023547 Prrx1 protein_coding protein_coding MGP_C57BL6NJ_T0023548.1 MGP_C57BL6NJ_G0017073.1 mouse_genomes_project 1 174296735 174339638 - Prrx1 protein_coding processed_transcript MGP_C57BL6NJ_T0023549.1 MGP_C57BL6NJ_G0017073.1 mouse_genomes_project 1 174302014 174363484 - MGP_C57BL6NJ_P0023549 Prrx1 protein_coding protein_coding MGP_C57BL6NJ_T0023550.1 MGP_C57BL6NJ_G0017073.1 mouse_genomes_project 1 174333232 174363487 - Prrx1 protein_coding retained_intron MGP_C57BL6NJ_T0005925.1 MGP_C57BL6NJ_G0004970.1 mouse_genomes_project 1 67303462 67311706 + Gm28982 lincRNA lincRNA MGP_C57BL6NJ_T0100862.1 MGP_C57BL6NJ_G0038908.1 mouse_genomes_project 1 39892262 39892372 - Snord89 snoRNA snoRNA MGP_C57BL6NJ_T0000567.1 MGP_C57BL6NJ_G0000483.1 mouse_genomes_project 1 33594723 33595064 + TEC TEC MGP_C57BL6NJ_T0022069.1 MGP_C57BL6NJ_G0016770.1 mouse_genomes_project 1 112847968 113035252 - MGP_C57BL6NJ_P0022069 Bcl2 protein_coding protein_coding MGP_C57BL6NJ_T0022070.1 MGP_C57BL6NJ_G0016770.1 mouse_genomes_project 1 113029996 113034157 - MGP_C57BL6NJ_P0022070 Bcl2 protein_coding protein_coding MGP_C57BL6NJ_T0012442.1 MGP_C57BL6NJ_G0010487.1 mouse_genomes_project 1 99627692 99628534 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024250.1 MGP_C57BL6NJ_G0017253.1 mouse_genomes_project 1 190609739 190612945 + Cox20 protein_coding retained_intron MGP_C57BL6NJ_T0024251.1 MGP_C57BL6NJ_G0017253.1 mouse_genomes_project 1 190609739 190613303 + MGP_C57BL6NJ_P0024251 Cox20 protein_coding protein_coding MGP_C57BL6NJ_T0024724.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205497943 205539944 - MGP_C57BL6NJ_P0024724 Rcor3 protein_coding protein_coding MGP_C57BL6NJ_T0024725.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205498143 205539802 - MGP_C57BL6NJ_P0024725 Rcor3 protein_coding protein_coding MGP_C57BL6NJ_T0024726.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205498153 205539935 - MGP_C57BL6NJ_P0024726 Rcor3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024727.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205499966 205517184 - MGP_C57BL6NJ_P0024727 Rcor3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024728.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205500289 205526541 - MGP_C57BL6NJ_P0024728 Rcor3 protein_coding protein_coding MGP_C57BL6NJ_T0024729.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205500770 205539831 - MGP_C57BL6NJ_P0024729 Rcor3 protein_coding protein_coding MGP_C57BL6NJ_T0024730.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205505568 205508234 - Rcor3 protein_coding retained_intron MGP_C57BL6NJ_T0024731.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205529752 205533164 - Rcor3 protein_coding retained_intron MGP_C57BL6NJ_T0024732.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205529896 205539567 - MGP_C57BL6NJ_P0024732 Rcor3 protein_coding protein_coding MGP_C57BL6NJ_T0024733.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205536104 205539939 - Rcor3 protein_coding retained_intron MGP_C57BL6NJ_T0024734.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205538303 205539914 - Rcor3 protein_coding processed_transcript MGP_C57BL6NJ_T0024735.1 MGP_C57BL6NJ_G0017352.1 mouse_genomes_project 1 205538594 205539928 - Rcor3 protein_coding processed_transcript MGP_C57BL6NJ_T0000620.1 MGP_C57BL6NJ_G0000536.1 mouse_genomes_project 1 64038349 64038631 + TEC TEC MGP_C57BL6NJ_T0023165.1 MGP_C57BL6NJ_G0017006.1 mouse_genomes_project 1 164179115 164242718 - MGP_C57BL6NJ_P0023165 Teddm2 protein_coding protein_coding MGP_C57BL6NJ_T0023166.1 MGP_C57BL6NJ_G0017006.1 mouse_genomes_project 1 164179115 164180769 - MGP_C57BL6NJ_P0023166 Teddm2 protein_coding protein_coding MGP_C57BL6NJ_T0023169.1 MGP_C57BL6NJ_G0017006.1 mouse_genomes_project 1 164239617 164242738 - Teddm2 protein_coding retained_intron MGP_C57BL6NJ_T0024619.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 202930293 203091662 + MGP_C57BL6NJ_P0024619 Ptpn14 protein_coding protein_coding MGP_C57BL6NJ_T0024620.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 202930300 203053867 + Ptpn14 protein_coding retained_intron MGP_C57BL6NJ_T0024621.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 202995205 203065234 + Ptpn14 protein_coding retained_intron MGP_C57BL6NJ_T0024622.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 202995241 203085035 + MGP_C57BL6NJ_P0024622 Ptpn14 protein_coding protein_coding MGP_C57BL6NJ_T0024623.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 203058300 203065721 + Ptpn14 protein_coding retained_intron MGP_C57BL6NJ_T0024624.1 MGP_C57BL6NJ_G0017329.1 mouse_genomes_project 1 203077635 203078410 + Ptpn14 protein_coding processed_transcript MGP_C57BL6NJ_T0003075.1 MGP_C57BL6NJ_G0002882.1 mouse_genomes_project 1 172932204 172990834 + Gm38304 antisense antisense MGP_C57BL6NJ_T0000485.1 MGP_C57BL6NJ_G0000404.1 mouse_genomes_project 1 747954 749588 + TEC TEC MGP_C57BL6NJ_T0005816.1 MGP_C57BL6NJ_G0004890.1 mouse_genomes_project 1 15364465 15369166 + Gm28784 lincRNA lincRNA MGP_C57BL6NJ_T0020117.1 MGP_C57BL6NJ_G0016386.1 mouse_genomes_project 1 46848490 46849352 - Gm5269 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0020118.1 MGP_C57BL6NJ_G0016386.1 mouse_genomes_project 1 46848906 46849157 - MGP_C57BL6NJ_P0020118 Gm5269 protein_coding protein_coding MGP_C57BL6NJ_T0000480.1 MGP_C57BL6NJ_G0000399.1 mouse_genomes_project 1 384905 387724 - TEC TEC MGP_C57BL6NJ_T0000713.1 MGP_C57BL6NJ_G0000629.1 mouse_genomes_project 1 112363671 112366982 - TEC TEC MGP_C57BL6NJ_T0022686.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143149327 143161722 + Klhl12 protein_coding retained_intron MGP_C57BL6NJ_T0022687.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143149327 143190626 + MGP_C57BL6NJ_P0022687 Klhl12 protein_coding protein_coding MGP_C57BL6NJ_T0022688.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143149327 143190771 + MGP_C57BL6NJ_P0022688 Klhl12 protein_coding protein_coding MGP_C57BL6NJ_T0022689.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143149351 143190626 + MGP_C57BL6NJ_P0022689 Klhl12 protein_coding protein_coding MGP_C57BL6NJ_T0022690.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143163795 143168755 + Klhl12 protein_coding retained_intron MGP_C57BL6NJ_T0022691.1 MGP_C57BL6NJ_G0016912.1 mouse_genomes_project 1 143170166 143185730 + Klhl12 protein_coding retained_intron MGP_C57BL6NJ_T0020670.1 MGP_C57BL6NJ_G0016484.1 mouse_genomes_project 1 66397443 66411887 - MGP_C57BL6NJ_P0020670 4933402D24Rik protein_coding protein_coding MGP_C57BL6NJ_T0003118.1 MGP_C57BL6NJ_G0002914.1 mouse_genomes_project 1 195214759 195223009 + Gm37885 antisense antisense MGP_C57BL6NJ_T0003119.1 MGP_C57BL6NJ_G0002914.1 mouse_genomes_project 1 195220564 195222137 + Gm37885 antisense antisense MGP_C57BL6NJ_T0000537.1 MGP_C57BL6NJ_G0000454.1 mouse_genomes_project 1 24241535 24244910 - TEC TEC MGP_C57BL6NJ_T0021022.1 MGP_C57BL6NJ_G0016552.1 mouse_genomes_project 1 78280920 78290942 - MGP_C57BL6NJ_P0021022 Prkag3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021023.1 MGP_C57BL6NJ_G0016552.1 mouse_genomes_project 1 78282199 78291208 - MGP_C57BL6NJ_P0021023 Prkag3 protein_coding protein_coding MGP_C57BL6NJ_T0021024.1 MGP_C57BL6NJ_G0016552.1 mouse_genomes_project 1 78282199 78290564 - MGP_C57BL6NJ_P0021024 Prkag3 protein_coding protein_coding MGP_C57BL6NJ_T0021025.1 MGP_C57BL6NJ_G0016552.1 mouse_genomes_project 1 78283461 78290854 - MGP_C57BL6NJ_P0021025 Prkag3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021026.1 MGP_C57BL6NJ_G0016552.1 mouse_genomes_project 1 78289504 78290891 - MGP_C57BL6NJ_P0021026 Prkag3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000833.1 MGP_C57BL6NJ_G0000747.1 mouse_genomes_project 1 169049202 169053106 + TEC TEC MGP_C57BL6NJ_T0023688.1 MGP_C57BL6NJ_G0017103.1 mouse_genomes_project 1 177367804 177398962 - MGP_C57BL6NJ_P0023688 Dusp27 protein_coding protein_coding MGP_C57BL6NJ_T0023689.1 MGP_C57BL6NJ_G0017103.1 mouse_genomes_project 1 177367809 177398936 - MGP_C57BL6NJ_P0023689 Dusp27 protein_coding protein_coding MGP_C57BL6NJ_T0012431.1 MGP_C57BL6NJ_G0010476.1 mouse_genomes_project 1 93885329 93886584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020343.1 MGP_C57BL6NJ_G0016430.1 mouse_genomes_project 1 59559744 59569080 + MGP_C57BL6NJ_P0020343 1700066M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0020344.1 MGP_C57BL6NJ_G0016430.1 mouse_genomes_project 1 59559757 59562287 + 1700066M21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0020345.1 MGP_C57BL6NJ_G0016430.1 mouse_genomes_project 1 59559764 59562203 + 1700066M21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0009708.1 MGP_C57BL6NJ_G0007793.1 mouse_genomes_project 1 98501813 98501875 + Mir6901 miRNA miRNA MGP_C57BL6NJ_T0017556.1 MGP_C57BL6NJ_G0015521.1 mouse_genomes_project 1 208522528 208570414 + A330023F24Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017557.1 MGP_C57BL6NJ_G0015521.1 mouse_genomes_project 1 208522538 208576305 + A330023F24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017558.1 MGP_C57BL6NJ_G0015521.1 mouse_genomes_project 1 208566349 208587123 + A330023F24Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017559.1 MGP_C57BL6NJ_G0015521.1 mouse_genomes_project 1 208572985 208588098 + A330023F24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0024683.1 MGP_C57BL6NJ_G0017343.1 mouse_genomes_project 1 204680693 204705480 + MGP_C57BL6NJ_P0024683 Tmem206 protein_coding protein_coding MGP_C57BL6NJ_T0000792.1 MGP_C57BL6NJ_G0000706.1 mouse_genomes_project 1 148131163 148133623 + TEC TEC MGP_C57BL6NJ_T0009734.1 MGP_C57BL6NJ_G0007819.1 mouse_genomes_project 1 173188297 173188407 + Mir199a-2 miRNA miRNA MGP_C57BL6NJ_T0012212.1 MGP_C57BL6NJ_G0010257.1 mouse_genomes_project 1 23820458 23821657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012208.1 MGP_C57BL6NJ_G0010253.1 mouse_genomes_project 1 21695548 21697815 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003105.1 MGP_C57BL6NJ_G0002903.1 mouse_genomes_project 1 184097687 184098355 + Gm36937 antisense antisense MGP_C57BL6NJ_T0012226.1 MGP_C57BL6NJ_G0010271.1 mouse_genomes_project 1 30338237 30338565 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000901.1 MGP_C57BL6NJ_G0000814.1 mouse_genomes_project 1 194633992 194637236 - TEC TEC MGP_C57BL6NJ_T0022517.1 MGP_C57BL6NJ_G0016875.1 mouse_genomes_project 1 140876861 140911673 - MGP_C57BL6NJ_P0022517 Tmcc2 protein_coding protein_coding MGP_C57BL6NJ_T0022518.1 MGP_C57BL6NJ_G0016875.1 mouse_genomes_project 1 140876862 140888433 - Tmcc2 protein_coding retained_intron MGP_C57BL6NJ_T0022519.1 MGP_C57BL6NJ_G0016875.1 mouse_genomes_project 1 140876862 140888434 - MGP_C57BL6NJ_P0022519 Tmcc2 protein_coding protein_coding MGP_C57BL6NJ_T0022520.1 MGP_C57BL6NJ_G0016875.1 mouse_genomes_project 1 140881145 140887619 - Tmcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0022521.1 MGP_C57BL6NJ_G0016875.1 mouse_genomes_project 1 140881572 140885495 - Tmcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0012497.1 MGP_C57BL6NJ_G0010542.1 mouse_genomes_project 1 120408939 120409477 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012301.1 MGP_C57BL6NJ_G0010346.1 mouse_genomes_project 1 50566520 50566735 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000751.1 MGP_C57BL6NJ_G0000667.1 mouse_genomes_project 1 138113904 138117745 + TEC TEC MGP_C57BL6NJ_T0021019.1 MGP_C57BL6NJ_G0016551.1 mouse_genomes_project 1 78254527 78279891 + MGP_C57BL6NJ_P0021019 Cyp27a1 protein_coding protein_coding MGP_C57BL6NJ_T0021020.1 MGP_C57BL6NJ_G0016551.1 mouse_genomes_project 1 78277349 78278715 + Cyp27a1 protein_coding retained_intron MGP_C57BL6NJ_T0021021.1 MGP_C57BL6NJ_G0016551.1 mouse_genomes_project 1 78278807 78279822 + Cyp27a1 protein_coding retained_intron MGP_C57BL6NJ_T0020473.1 MGP_C57BL6NJ_G0016452.1 mouse_genomes_project 1 61321478 61368187 - MGP_C57BL6NJ_P0020473 Als2cr11 protein_coding protein_coding MGP_C57BL6NJ_T0020474.1 MGP_C57BL6NJ_G0016452.1 mouse_genomes_project 1 61340590 61357810 - Als2cr11 protein_coding processed_transcript MGP_C57BL6NJ_T0099211.1 MGP_C57BL6NJ_G0037275.1 mouse_genomes_project 1 46728616 46728819 + Gm23984 ribozyme ribozyme MGP_C57BL6NJ_T0024156.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186603751 186955046 + MGP_C57BL6NJ_P0024156 Fmn2 protein_coding protein_coding MGP_C57BL6NJ_T0024157.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186664768 186714962 + Fmn2 protein_coding processed_transcript MGP_C57BL6NJ_T0024158.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186741954 186747793 + Fmn2 protein_coding processed_transcript MGP_C57BL6NJ_T0024159.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186741955 186830923 + MGP_C57BL6NJ_P0024159 Fmn2 protein_coding protein_coding MGP_C57BL6NJ_T0024160.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186744695 186836722 + Fmn2 protein_coding retained_intron MGP_C57BL6NJ_T0024161.1 MGP_C57BL6NJ_G0017235.1 mouse_genomes_project 1 186845776 186953588 + Fmn2 protein_coding processed_transcript MGP_C57BL6NJ_T0002925.1 MGP_C57BL6NJ_G0002768.1 mouse_genomes_project 1 37530270 37534712 - 4930439A04Rik antisense antisense MGP_C57BL6NJ_T0002926.1 MGP_C57BL6NJ_G0002768.1 mouse_genomes_project 1 37534094 37534728 - 4930439A04Rik antisense antisense MGP_C57BL6NJ_T0021467.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625055 90632755 + Psmd1 protein_coding retained_intron MGP_C57BL6NJ_T0021468.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625055 90633639 + Psmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0021469.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625287 90698701 + MGP_C57BL6NJ_P0021469 Psmd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021470.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625287 90706265 + MGP_C57BL6NJ_P0021470 Psmd1 protein_coding protein_coding MGP_C57BL6NJ_T0021471.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625309 90628331 + Psmd1 protein_coding retained_intron MGP_C57BL6NJ_T0021472.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625360 90634263 + Psmd1 protein_coding retained_intron MGP_C57BL6NJ_T0021473.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90625539 90639950 + Psmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0021476.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90674955 90698752 + Psmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0021477.1 MGP_C57BL6NJ_G0016635.1 mouse_genomes_project 1 90692330 90698719 + Psmd1 protein_coding retained_intron MGP_C57BL6NJ_T0020260.1 MGP_C57BL6NJ_G0016412.1 mouse_genomes_project 1 55563353 55573889 - protein_coding processed_transcript MGP_C57BL6NJ_T0005939.1 MGP_C57BL6NJ_G0004981.1 mouse_genomes_project 1 75396434 75412130 - Gm4319 lincRNA lincRNA MGP_C57BL6NJ_T0023975.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183652513 183689653 + MGP_C57BL6NJ_P0023975 Slamf6 protein_coding protein_coding MGP_C57BL6NJ_T0023976.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183652535 183677488 + MGP_C57BL6NJ_P0023976 Slamf6 protein_coding protein_coding MGP_C57BL6NJ_T0023977.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183652680 183653678 + Slamf6 protein_coding retained_intron MGP_C57BL6NJ_T0023978.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183652706 183684557 + MGP_C57BL6NJ_P0023978 Slamf6 protein_coding protein_coding MGP_C57BL6NJ_T0023979.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183654490 183667717 + MGP_C57BL6NJ_P0023979 Slamf6 protein_coding protein_coding MGP_C57BL6NJ_T0023980.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183665134 183668054 + Slamf6 protein_coding retained_intron MGP_C57BL6NJ_T0023981.1 MGP_C57BL6NJ_G0017175.1 mouse_genomes_project 1 183676206 183685342 + Slamf6 protein_coding processed_transcript MGP_C57BL6NJ_T0021430.1 MGP_C57BL6NJ_G0016627.1 mouse_genomes_project 1 90167294 90169699 + MGP_C57BL6NJ_P0021430 protein_coding protein_coding MGP_C57BL6NJ_T0012291.1 MGP_C57BL6NJ_G0010336.1 mouse_genomes_project 1 46981216 46981601 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012231.1 MGP_C57BL6NJ_G0010276.1 mouse_genomes_project 1 31191580 31193441 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023995.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183837404 183880306 + MGP_C57BL6NJ_P0023995 Copa protein_coding protein_coding MGP_C57BL6NJ_T0023996.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183837518 183851764 + Copa protein_coding retained_intron MGP_C57BL6NJ_T0023997.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183837680 183868695 + MGP_C57BL6NJ_P0023997 Copa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023998.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183837706 183862591 + Copa protein_coding retained_intron MGP_C57BL6NJ_T0023999.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183837707 183880311 + MGP_C57BL6NJ_P0023999 Copa protein_coding protein_coding MGP_C57BL6NJ_T0024000.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183853454 183859464 + Copa protein_coding processed_transcript MGP_C57BL6NJ_T0024001.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183857939 183864120 + MGP_C57BL6NJ_P0024001 Copa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024002.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183870129 183873507 + Copa protein_coding retained_intron MGP_C57BL6NJ_T0024003.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183872275 183880309 + Copa protein_coding retained_intron MGP_C57BL6NJ_T0024004.1 MGP_C57BL6NJ_G0017179.1 mouse_genomes_project 1 183876082 183877330 + Copa protein_coding retained_intron MGP_C57BL6NJ_T0009703.1 MGP_C57BL6NJ_G0007788.1 mouse_genomes_project 1 90946788 90946935 - Mir3535 miRNA miRNA MGP_C57BL6NJ_T0000772.1 MGP_C57BL6NJ_G0000687.1 mouse_genomes_project 1 144322588 144324839 - TEC TEC MGP_C57BL6NJ_T0022749.1 MGP_C57BL6NJ_G0016927.1 mouse_genomes_project 1 144161051 144165232 - MGP_C57BL6NJ_P0022749 Shisa4 protein_coding protein_coding MGP_C57BL6NJ_T0022750.1 MGP_C57BL6NJ_G0016927.1 mouse_genomes_project 1 144161054 144163445 - Shisa4 protein_coding retained_intron MGP_C57BL6NJ_T0022751.1 MGP_C57BL6NJ_G0016927.1 mouse_genomes_project 1 144163882 144165072 - Shisa4 protein_coding retained_intron MGP_C57BL6NJ_T0017448.1 MGP_C57BL6NJ_G0015485.1 mouse_genomes_project 1 36683910 36686659 + D430040D24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017449.1 MGP_C57BL6NJ_G0015485.1 mouse_genomes_project 1 36684568 36692605 + D430040D24Rik processed_transcript antisense MGP_C57BL6NJ_T0023762.1 MGP_C57BL6NJ_G0017125.1 mouse_genomes_project 1 181451384 181471091 - MGP_C57BL6NJ_P0023762 Hsd17b7 protein_coding protein_coding MGP_C57BL6NJ_T0023763.1 MGP_C57BL6NJ_G0017125.1 mouse_genomes_project 1 181454725 181467573 - Hsd17b7 protein_coding processed_transcript MGP_C57BL6NJ_T0023764.1 MGP_C57BL6NJ_G0017125.1 mouse_genomes_project 1 181457350 181471091 - MGP_C57BL6NJ_P0023764 Hsd17b7 protein_coding protein_coding MGP_C57BL6NJ_T0023765.1 MGP_C57BL6NJ_G0017125.1 mouse_genomes_project 1 181461302 181467999 - Hsd17b7 protein_coding processed_transcript MGP_C57BL6NJ_T0021587.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92183039 92265791 + MGP_C57BL6NJ_P0021587 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021589.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92243942 92266959 + MGP_C57BL6NJ_P0021589 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021590.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92243942 92266942 + MGP_C57BL6NJ_P0021590 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021591.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92243961 92265686 + MGP_C57BL6NJ_P0021591 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021592.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92253079 92266966 + MGP_C57BL6NJ_P0021592 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021593.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92263676 92266942 + MGP_C57BL6NJ_P0021593 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0021594.1 MGP_C57BL6NJ_G0016661.1 mouse_genomes_project 1 92263676 92266948 + MGP_C57BL6NJ_P0021594 Neu2 protein_coding protein_coding MGP_C57BL6NJ_T0019603.1 MGP_C57BL6NJ_G0016288.1 mouse_genomes_project 1 30700154 30801890 - MGP_C57BL6NJ_P0019603 4931428L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0019604.1 MGP_C57BL6NJ_G0016288.1 mouse_genomes_project 1 30706092 30801950 - MGP_C57BL6NJ_P0019604 4931428L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0019605.1 MGP_C57BL6NJ_G0016288.1 mouse_genomes_project 1 30706645 30801921 - MGP_C57BL6NJ_P0019605 4931428L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0019608.1 MGP_C57BL6NJ_G0016288.1 mouse_genomes_project 1 30779834 30801977 - MGP_C57BL6NJ_P0019608 4931428L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0024150.1 MGP_C57BL6NJ_G0017231.1 mouse_genomes_project 1 186473497 186474427 + MGP_C57BL6NJ_P0024150 Olfr417 protein_coding protein_coding MGP_C57BL6NJ_T0000799.1 MGP_C57BL6NJ_G0000713.1 mouse_genomes_project 1 152085985 152086119 + TEC TEC MGP_C57BL6NJ_T0023757.1 MGP_C57BL6NJ_G0017123.1 mouse_genomes_project 1 181221883 181228030 - MGP_C57BL6NJ_P0023757 Rgs4 protein_coding protein_coding MGP_C57BL6NJ_T0023758.1 MGP_C57BL6NJ_G0017123.1 mouse_genomes_project 1 181221888 181228034 - MGP_C57BL6NJ_P0023758 Rgs4 protein_coding protein_coding MGP_C57BL6NJ_T0023759.1 MGP_C57BL6NJ_G0017123.1 mouse_genomes_project 1 181224240 181228015 - Rgs4 protein_coding retained_intron MGP_C57BL6NJ_T0022622.1 MGP_C57BL6NJ_G0016896.1 mouse_genomes_project 1 142312663 142323681 - MGP_C57BL6NJ_P0022622 Lax1 protein_coding protein_coding MGP_C57BL6NJ_T0022623.1 MGP_C57BL6NJ_G0016896.1 mouse_genomes_project 1 142314042 142323659 - MGP_C57BL6NJ_P0022623 Lax1 protein_coding protein_coding MGP_C57BL6NJ_T0022653.1 MGP_C57BL6NJ_G0016904.1 mouse_genomes_project 1 142866457 142874241 + MGP_C57BL6NJ_P0022653 Mybph protein_coding protein_coding MGP_C57BL6NJ_T0022654.1 MGP_C57BL6NJ_G0016904.1 mouse_genomes_project 1 142866466 142874242 + MGP_C57BL6NJ_P0022654 Mybph protein_coding protein_coding MGP_C57BL6NJ_T0100878.1 MGP_C57BL6NJ_G0038924.1 mouse_genomes_project 1 65754823 65754858 + Gm26457 snoRNA snoRNA MGP_C57BL6NJ_T0019908.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38436159 38910178 - MGP_C57BL6NJ_P0019908 Aff3 protein_coding protein_coding MGP_C57BL6NJ_T0019909.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38436160 38947418 - MGP_C57BL6NJ_P0019909 Aff3 protein_coding protein_coding MGP_C57BL6NJ_T0019910.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38438282 38910134 - MGP_C57BL6NJ_P0019910 Aff3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019911.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38440095 38456604 - Aff3 protein_coding processed_transcript MGP_C57BL6NJ_T0019912.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38594865 38947418 - Aff3 protein_coding processed_transcript MGP_C57BL6NJ_T0019913.1 MGP_C57BL6NJ_G0016341.1 mouse_genomes_project 1 38814692 38947418 - MGP_C57BL6NJ_P0019913 Aff3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023261.1 MGP_C57BL6NJ_G0017025.1 mouse_genomes_project 1 166768121 166786594 + MGP_C57BL6NJ_P0023261 Nphs2 protein_coding protein_coding MGP_C57BL6NJ_T0023262.1 MGP_C57BL6NJ_G0017025.1 mouse_genomes_project 1 166768407 166784990 + MGP_C57BL6NJ_P0023262 Nphs2 protein_coding protein_coding MGP_C57BL6NJ_T0012568.1 MGP_C57BL6NJ_G0010613.1 mouse_genomes_project 1 154741444 154741837 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022066.1 MGP_C57BL6NJ_G0016769.1 mouse_genomes_project 1 112461112 112688987 + MGP_C57BL6NJ_P0022066 Phlpp1 protein_coding protein_coding MGP_C57BL6NJ_T0022067.1 MGP_C57BL6NJ_G0016769.1 mouse_genomes_project 1 112573054 112579052 + Phlpp1 protein_coding retained_intron MGP_C57BL6NJ_T0022068.1 MGP_C57BL6NJ_G0016769.1 mouse_genomes_project 1 112605574 112607352 + Phlpp1 protein_coding processed_transcript MGP_C57BL6NJ_T0017479.1 MGP_C57BL6NJ_G0015500.1 mouse_genomes_project 1 94641641 94678087 - 4933400F21Rik processed_transcript antisense MGP_C57BL6NJ_T0017480.1 MGP_C57BL6NJ_G0015500.1 mouse_genomes_project 1 94668631 94678073 - 4933400F21Rik processed_transcript antisense MGP_C57BL6NJ_T0017481.1 MGP_C57BL6NJ_G0015500.1 mouse_genomes_project 1 94672229 94678067 - 4933400F21Rik processed_transcript retained_intron MGP_C57BL6NJ_T0002994.1 MGP_C57BL6NJ_G0002819.1 mouse_genomes_project 1 91939831 91940525 - Efhd1os antisense antisense MGP_C57BL6NJ_T0019230.1 MGP_C57BL6NJ_G0016209.1 mouse_genomes_project 1 3617957 3661240 + MGP_C57BL6NJ_P0019230 Fam150a protein_coding protein_coding MGP_C57BL6NJ_T0000617.1 MGP_C57BL6NJ_G0000533.1 mouse_genomes_project 1 63222705 63227315 + TEC TEC MGP_C57BL6NJ_T0000573.1 MGP_C57BL6NJ_G0000489.1 mouse_genomes_project 1 34760705 34763741 + TEC TEC MGP_C57BL6NJ_T0000793.1 MGP_C57BL6NJ_G0000707.1 mouse_genomes_project 1 148143590 148147713 - TEC TEC MGP_C57BL6NJ_T0000649.1 MGP_C57BL6NJ_G0000565.1 mouse_genomes_project 1 77808451 77811317 + TEC TEC MGP_C57BL6NJ_T0012500.1 MGP_C57BL6NJ_G0010545.1 mouse_genomes_project 1 123724218 123724618 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000584.1 MGP_C57BL6NJ_G0000500.1 mouse_genomes_project 1 39294484 39296123 + TEC TEC MGP_C57BL6NJ_T0102388.1 MGP_C57BL6NJ_G0040320.1 mouse_genomes_project 1 124876408 125153911 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0019839.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632860 37640899 + MGP_C57BL6NJ_P0019839 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019840.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632891 37641039 + MGP_C57BL6NJ_P0019840 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019841.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632898 37639393 + MGP_C57BL6NJ_P0019841 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019842.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632907 37639185 + MGP_C57BL6NJ_P0019842 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019843.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632923 37640902 + MGP_C57BL6NJ_P0019843 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019844.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37632929 37634276 + MGP_C57BL6NJ_P0019844 Unc50 protein_coding protein_coding MGP_C57BL6NJ_T0019845.1 MGP_C57BL6NJ_G0016329.1 mouse_genomes_project 1 37634065 37639527 + Unc50 protein_coding retained_intron MGP_C57BL6NJ_T0002987.1 MGP_C57BL6NJ_G0002812.1 mouse_genomes_project 1 78913170 78917404 - Gm15178 antisense antisense MGP_C57BL6NJ_T0005817.1 MGP_C57BL6NJ_G0004891.1 mouse_genomes_project 1 16590561 16596644 + lincRNA lincRNA MGP_C57BL6NJ_T0022471.1 MGP_C57BL6NJ_G0016866.1 mouse_genomes_project 1 140400196 140425238 + MGP_C57BL6NJ_P0022471 Nucks1 protein_coding protein_coding MGP_C57BL6NJ_T0022472.1 MGP_C57BL6NJ_G0016866.1 mouse_genomes_project 1 140400218 140428880 + MGP_C57BL6NJ_P0022472 Nucks1 protein_coding protein_coding MGP_C57BL6NJ_T0022473.1 MGP_C57BL6NJ_G0016866.1 mouse_genomes_project 1 140420328 140421237 + Nucks1 protein_coding retained_intron MGP_C57BL6NJ_T0020739.1 MGP_C57BL6NJ_G0016502.1 mouse_genomes_project 1 68722123 68723990 + MGP_C57BL6NJ_P0020739 Crygf protein_coding protein_coding MGP_C57BL6NJ_T0020740.1 MGP_C57BL6NJ_G0016502.1 mouse_genomes_project 1 68722141 68723989 + MGP_C57BL6NJ_P0020740 Crygf protein_coding protein_coding MGP_C57BL6NJ_T0012276.1 MGP_C57BL6NJ_G0010321.1 mouse_genomes_project 1 45095826 45096815 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000511.1 MGP_C57BL6NJ_G0000430.1 mouse_genomes_project 1 11168755 11169450 - TEC TEC MGP_C57BL6NJ_T0102703.1 MGP_C57BL6NJ_G0040498.1 mouse_genomes_project 1 190007418 190206891 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000737.1 MGP_C57BL6NJ_G0000653.1 mouse_genomes_project 1 133903732 133906429 - TEC TEC MGP_C57BL6NJ_T0021394.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89028459 89179524 - MGP_C57BL6NJ_P0021394 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021395.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89028459 89178312 - MGP_C57BL6NJ_P0021395 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021396.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89031534 89178296 - MGP_C57BL6NJ_P0021396 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021397.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89031534 89059902 - MGP_C57BL6NJ_P0021397 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021398.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89031847 89038957 - MGP_C57BL6NJ_P0021398 Trip12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021399.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89033480 89036146 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021400.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89035876 89039028 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021401.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89055352 89065029 - MGP_C57BL6NJ_P0021401 Trip12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021402.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89059782 89061168 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021403.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89059843 89178319 - MGP_C57BL6NJ_P0021403 Trip12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021404.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89065027 89178312 - MGP_C57BL6NJ_P0021404 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021405.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89067273 89070809 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021406.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89081564 89082329 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021407.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89081600 89110578 - MGP_C57BL6NJ_P0021407 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021408.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89097962 89099896 - Trip12 protein_coding retained_intron MGP_C57BL6NJ_T0021409.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89098428 89178309 - MGP_C57BL6NJ_P0021409 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021410.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89111013 89179274 - MGP_C57BL6NJ_P0021410 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0021411.1 MGP_C57BL6NJ_G0016619.1 mouse_genomes_project 1 89111257 89176481 - MGP_C57BL6NJ_P0021411 Trip12 protein_coding protein_coding MGP_C57BL6NJ_T0023325.1 MGP_C57BL6NJ_G0017035.1 mouse_genomes_project 1 168062449 168092278 + MGP_C57BL6NJ_P0023325 BC026585 protein_coding protein_coding MGP_C57BL6NJ_T0023326.1 MGP_C57BL6NJ_G0017035.1 mouse_genomes_project 1 168062452 168092515 + MGP_C57BL6NJ_P0023326 BC026585 protein_coding protein_coding MGP_C57BL6NJ_T0023327.1 MGP_C57BL6NJ_G0017035.1 mouse_genomes_project 1 168062607 168094949 + MGP_C57BL6NJ_P0023327 BC026585 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0023328.1 MGP_C57BL6NJ_G0017035.1 mouse_genomes_project 1 168065487 168074182 + MGP_C57BL6NJ_P0023328 BC026585 protein_coding protein_coding MGP_C57BL6NJ_T0023329.1 MGP_C57BL6NJ_G0017035.1 mouse_genomes_project 1 168075763 168096093 + MGP_C57BL6NJ_P0023329 BC026585 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022568.1 MGP_C57BL6NJ_G0016883.1 mouse_genomes_project 1 141631252 141654781 + MGP_C57BL6NJ_P0022568 Pik3c2b protein_coding protein_coding MGP_C57BL6NJ_T0022569.1 MGP_C57BL6NJ_G0016883.1 mouse_genomes_project 1 141631597 141655585 + Pik3c2b protein_coding retained_intron MGP_C57BL6NJ_T0022570.1 MGP_C57BL6NJ_G0016883.1 mouse_genomes_project 1 141631597 141669797 + Pik3c2b protein_coding retained_intron MGP_C57BL6NJ_T0022571.1 MGP_C57BL6NJ_G0016883.1 mouse_genomes_project 1 141631597 141698855 + MGP_C57BL6NJ_P0022571 Pik3c2b protein_coding protein_coding MGP_C57BL6NJ_T0006021.1 MGP_C57BL6NJ_G0005047.1 mouse_genomes_project 1 112441937 112460885 - Gm20753 lincRNA lincRNA MGP_C57BL6NJ_T0102650.1 MGP_C57BL6NJ_G0040445.1 mouse_genomes_project 1 90053376 90056646 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019697.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34750399 34782444 - MGP_C57BL6NJ_P0019697 Fam168b protein_coding protein_coding MGP_C57BL6NJ_T0019698.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34750406 34782459 - MGP_C57BL6NJ_P0019698 Fam168b protein_coding protein_coding MGP_C57BL6NJ_T0019699.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34754415 34782358 - MGP_C57BL6NJ_P0019699 Fam168b protein_coding protein_coding MGP_C57BL6NJ_T0019700.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34754532 34782379 - MGP_C57BL6NJ_P0019700 Fam168b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019701.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34755189 34782428 - MGP_C57BL6NJ_P0019701 Fam168b protein_coding protein_coding MGP_C57BL6NJ_T0019702.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34756792 34782407 - Fam168b protein_coding processed_transcript MGP_C57BL6NJ_T0019703.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34756879 34782398 - MGP_C57BL6NJ_P0019703 Fam168b protein_coding protein_coding MGP_C57BL6NJ_T0019704.1 MGP_C57BL6NJ_G0016306.1 mouse_genomes_project 1 34765822 34782459 - Fam168b protein_coding retained_intron MGP_C57BL6NJ_T0012454.1 MGP_C57BL6NJ_G0010499.1 mouse_genomes_project 1 106159552 106160789 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020335.1 MGP_C57BL6NJ_G0016427.1 mouse_genomes_project 1 57415347 57809181 + MGP_C57BL6NJ_P0020335 Plcl1 protein_coding protein_coding MGP_C57BL6NJ_T0020336.1 MGP_C57BL6NJ_G0016427.1 mouse_genomes_project 1 57755411 57789811 + Plcl1 protein_coding processed_transcript MGP_C57BL6NJ_T0012149.1 MGP_C57BL6NJ_G0010194.1 mouse_genomes_project 1 4501384 4501772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021825.1 MGP_C57BL6NJ_G0016719.1 mouse_genomes_project 1 97810058 97811114 + MGP_C57BL6NJ_P0021825 Olfr12 protein_coding protein_coding MGP_C57BL6NJ_T0000604.1 MGP_C57BL6NJ_G0000520.1 mouse_genomes_project 1 56868103 56870853 - TEC TEC MGP_C57BL6NJ_T0102671.1 MGP_C57BL6NJ_G0040466.1 mouse_genomes_project 1 113384918 113667084 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000635.1 MGP_C57BL6NJ_G0000551.1 mouse_genomes_project 1 69658306 69660485 + TEC TEC MGP_C57BL6NJ_T0019770.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36674848 36684559 - MGP_C57BL6NJ_P0019770 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0019771.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36674851 36684559 - MGP_C57BL6NJ_P0019771 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0019772.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36674851 36683736 - MGP_C57BL6NJ_P0019772 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0019773.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36674851 36683767 - MGP_C57BL6NJ_P0019773 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0019774.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36677935 36679104 - Sema4c protein_coding retained_intron MGP_C57BL6NJ_T0019775.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36679433 36680440 - Sema4c protein_coding retained_intron MGP_C57BL6NJ_T0019776.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36680609 36683744 - MGP_C57BL6NJ_P0019776 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0019777.1 MGP_C57BL6NJ_G0016319.1 mouse_genomes_project 1 36682141 36684460 - MGP_C57BL6NJ_P0019777 Sema4c protein_coding protein_coding MGP_C57BL6NJ_T0022511.1 MGP_C57BL6NJ_G0016872.1 mouse_genomes_project 1 140737913 140738633 - MGP_C57BL6NJ_P0022511 Gm10188 protein_coding protein_coding MGP_C57BL6NJ_T0024027.1 MGP_C57BL6NJ_G0017183.1 mouse_genomes_project 1 183975782 183987256 - MGP_C57BL6NJ_P0024027 Casq1 protein_coding protein_coding MGP_C57BL6NJ_T0024028.1 MGP_C57BL6NJ_G0017183.1 mouse_genomes_project 1 183975783 183981352 - Casq1 protein_coding retained_intron MGP_C57BL6NJ_T0024029.1 MGP_C57BL6NJ_G0017183.1 mouse_genomes_project 1 183982536 183987103 - MGP_C57BL6NJ_P0024029 Casq1 protein_coding protein_coding MGP_C57BL6NJ_T0005970.1 MGP_C57BL6NJ_G0005003.1 mouse_genomes_project 1 84425968 84458983 + 1700016L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0005971.1 MGP_C57BL6NJ_G0005003.1 mouse_genomes_project 1 84425976 84463190 + 1700016L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0012299.1 MGP_C57BL6NJ_G0010344.1 mouse_genomes_project 1 50133731 50134662 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100915.1 MGP_C57BL6NJ_G0038961.1 mouse_genomes_project 1 158160968 158161097 - Gm22966 snoRNA snoRNA MGP_C57BL6NJ_T0003093.1 MGP_C57BL6NJ_G0002895.1 mouse_genomes_project 1 181735630 181736327 + 4930500M09Rik antisense antisense MGP_C57BL6NJ_T0003094.1 MGP_C57BL6NJ_G0002895.1 mouse_genomes_project 1 181735630 181737193 + 4930500M09Rik antisense antisense MGP_C57BL6NJ_T0020246.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036642 55049362 + MGP_C57BL6NJ_P0020246 Osgepl1 protein_coding protein_coding MGP_C57BL6NJ_T0020247.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036672 55049193 + MGP_C57BL6NJ_P0020247 Osgepl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020248.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036675 55039651 + Osgepl1 protein_coding processed_transcript MGP_C57BL6NJ_T0020249.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036675 55041677 + Osgepl1 protein_coding retained_intron MGP_C57BL6NJ_T0020250.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036681 55047083 + MGP_C57BL6NJ_P0020250 Osgepl1 protein_coding protein_coding MGP_C57BL6NJ_T0020251.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55036691 55049186 + MGP_C57BL6NJ_P0020251 Osgepl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020252.1 MGP_C57BL6NJ_G0016409.1 mouse_genomes_project 1 55042727 55049194 + Osgepl1 protein_coding retained_intron MGP_C57BL6NJ_T0020563.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62579473 62754746 + MGP_C57BL6NJ_P0020563 Nbeal1 protein_coding protein_coding MGP_C57BL6NJ_T0020564.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62579686 62584772 + Nbeal1 protein_coding retained_intron MGP_C57BL6NJ_T0020565.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62626978 62640274 + MGP_C57BL6NJ_P0020565 Nbeal1 protein_coding protein_coding MGP_C57BL6NJ_T0020566.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62631998 62634675 + Nbeal1 protein_coding retained_intron MGP_C57BL6NJ_T0020567.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62640176 62702802 + Nbeal1 protein_coding retained_intron MGP_C57BL6NJ_T0020568.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62679922 62743660 + MGP_C57BL6NJ_P0020568 Nbeal1 protein_coding protein_coding MGP_C57BL6NJ_T0020569.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62679930 62748012 + MGP_C57BL6NJ_P0020569 Nbeal1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020570.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62685755 62688973 + Nbeal1 protein_coding retained_intron MGP_C57BL6NJ_T0020571.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62699533 62714346 + MGP_C57BL6NJ_P0020571 Nbeal1 protein_coding protein_coding MGP_C57BL6NJ_T0020572.1 MGP_C57BL6NJ_G0016466.1 mouse_genomes_project 1 62704698 62706960 + Nbeal1 protein_coding retained_intron MGP_C57BL6NJ_T0024134.1 MGP_C57BL6NJ_G0017218.1 mouse_genomes_project 1 186068895 186105518 - MGP_C57BL6NJ_P0024134 Ifi205 protein_coding protein_coding MGP_C57BL6NJ_T0024135.1 MGP_C57BL6NJ_G0017218.1 mouse_genomes_project 1 186098720 186105573 - Ifi205 protein_coding retained_intron MGP_C57BL6NJ_T0003006.1 MGP_C57BL6NJ_G0002831.1 mouse_genomes_project 1 98991206 99014447 + Gm10550 antisense antisense MGP_C57BL6NJ_T0003133.1 MGP_C57BL6NJ_G0002927.1 mouse_genomes_project 1 203098135 203102853 + Gm37422 antisense antisense MGP_C57BL6NJ_T0099289.1 MGP_C57BL6NJ_G0037353.1 mouse_genomes_project 1 53553025 53555524 - Gm28323 sense_intronic sense_intronic MGP_C57BL6NJ_T0000808.1 MGP_C57BL6NJ_G0000722.1 mouse_genomes_project 1 159395675 159397984 - TEC TEC MGP_C57BL6NJ_T0022071.1 MGP_C57BL6NJ_G0016771.1 mouse_genomes_project 1 113041436 113081152 - MGP_C57BL6NJ_P0022071 Kdsr protein_coding protein_coding MGP_C57BL6NJ_T0022072.1 MGP_C57BL6NJ_G0016771.1 mouse_genomes_project 1 113066729 113081124 - Kdsr protein_coding retained_intron MGP_C57BL6NJ_T0022073.1 MGP_C57BL6NJ_G0016771.1 mouse_genomes_project 1 113078526 113081108 - Kdsr protein_coding retained_intron MGP_C57BL6NJ_T0021795.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97051663 97301862 - MGP_C57BL6NJ_P0021795 Hdac4 protein_coding protein_coding MGP_C57BL6NJ_T0021796.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97055641 97268600 - MGP_C57BL6NJ_P0021796 Hdac4 protein_coding protein_coding MGP_C57BL6NJ_T0021797.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97055842 97129743 - Hdac4 protein_coding processed_transcript MGP_C57BL6NJ_T0021798.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97056087 97057739 - Hdac4 protein_coding retained_intron MGP_C57BL6NJ_T0021799.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97078260 97098388 - MGP_C57BL6NJ_P0021799 Hdac4 protein_coding protein_coding MGP_C57BL6NJ_T0021800.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97111937 97115513 - Hdac4 protein_coding retained_intron MGP_C57BL6NJ_T0021801.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97126557 97129748 - Hdac4 protein_coding retained_intron MGP_C57BL6NJ_T0021802.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97152093 97301818 - MGP_C57BL6NJ_P0021802 Hdac4 protein_coding protein_coding MGP_C57BL6NJ_T0021803.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97152104 97232205 - Hdac4 protein_coding processed_transcript MGP_C57BL6NJ_T0021804.1 MGP_C57BL6NJ_G0016710.1 mouse_genomes_project 1 97152188 97232205 - Hdac4 protein_coding processed_transcript MGP_C57BL6NJ_T0099633.1 MGP_C57BL6NJ_G0037679.1 mouse_genomes_project 1 146154767 146154871 - Gm25609 snRNA snRNA MGP_C57BL6NJ_T0009752.1 MGP_C57BL6NJ_G0007837.1 mouse_genomes_project 1 198170661 198170773 + Mir215 miRNA miRNA MGP_C57BL6NJ_T0024812.1 MGP_C57BL6NJ_G0017366.1 mouse_genomes_project 1 208485160 208508627 + MGP_C57BL6NJ_P0024812 Cd34 protein_coding protein_coding MGP_C57BL6NJ_T0024813.1 MGP_C57BL6NJ_G0017366.1 mouse_genomes_project 1 208485216 208508627 + MGP_C57BL6NJ_P0024813 Cd34 protein_coding protein_coding MGP_C57BL6NJ_T0024814.1 MGP_C57BL6NJ_G0017366.1 mouse_genomes_project 1 208485246 208498111 + Cd34 protein_coding retained_intron MGP_C57BL6NJ_T0024815.1 MGP_C57BL6NJ_G0017366.1 mouse_genomes_project 1 208485292 208487571 + Cd34 protein_coding retained_intron MGP_C57BL6NJ_T0024816.1 MGP_C57BL6NJ_G0017366.1 mouse_genomes_project 1 208485336 208505898 + MGP_C57BL6NJ_P0024816 Cd34 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012139.1 MGP_C57BL6NJ_G0010184.1 mouse_genomes_project 1 3642821 3643460 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012240.1 MGP_C57BL6NJ_G0010285.1 mouse_genomes_project 1 33495488 33495816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002947.1 MGP_C57BL6NJ_G0002785.1 mouse_genomes_project 1 52776092 52779034 - Gm28319 antisense antisense MGP_C57BL6NJ_T0000761.1 MGP_C57BL6NJ_G0000677.1 mouse_genomes_project 1 140605538 140611497 + TEC TEC MGP_C57BL6NJ_T0099659.1 MGP_C57BL6NJ_G0037705.1 mouse_genomes_project 1 194485409 194485503 - Gm23690 snRNA snRNA MGP_C57BL6NJ_T0003043.1 MGP_C57BL6NJ_G0002855.1 mouse_genomes_project 1 143916419 143917263 + Gm15445 antisense antisense MGP_C57BL6NJ_T0012356.1 MGP_C57BL6NJ_G0010401.1 mouse_genomes_project 1 65956088 65956705 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012489.1 MGP_C57BL6NJ_G0010534.1 mouse_genomes_project 1 118547143 118549371 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000679.1 MGP_C57BL6NJ_G0000595.1 mouse_genomes_project 1 91266911 91269165 + TEC TEC MGP_C57BL6NJ_T0012544.1 MGP_C57BL6NJ_G0010589.1 mouse_genomes_project 1 144683573 144683942 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020709.1 MGP_C57BL6NJ_G0016493.1 mouse_genomes_project 1 67783980 67784687 - protein_coding retained_intron MGP_C57BL6NJ_T0102663.1 MGP_C57BL6NJ_G0040458.1 mouse_genomes_project 1 97785729 97785841 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024047.1 MGP_C57BL6NJ_G0017189.1 mouse_genomes_project 1 184156447 184164001 + MGP_C57BL6NJ_P0024047 Pigm protein_coding protein_coding MGP_C57BL6NJ_T0012416.1 MGP_C57BL6NJ_G0010461.1 mouse_genomes_project 1 91409493 91409915 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020661.1 MGP_C57BL6NJ_G0016481.1 mouse_genomes_project 1 66259007 66326071 - MGP_C57BL6NJ_P0020661 Dytn protein_coding protein_coding MGP_C57BL6NJ_T0020662.1 MGP_C57BL6NJ_G0016481.1 mouse_genomes_project 1 66303401 66326054 - Dytn protein_coding retained_intron MGP_C57BL6NJ_T0021909.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98645241 98719720 - MGP_C57BL6NJ_P0021909 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021910.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98647063 98686430 - MGP_C57BL6NJ_P0021910 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021911.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98647303 98681534 - MGP_C57BL6NJ_P0021911 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021912.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98667870 98686396 - Hdlbp protein_coding retained_intron MGP_C57BL6NJ_T0021913.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98670319 98686426 - MGP_C57BL6NJ_P0021913 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021914.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98670736 98681703 - MGP_C57BL6NJ_P0021914 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021915.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98677860 98686176 - MGP_C57BL6NJ_P0021915 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021916.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98677896 98719734 - MGP_C57BL6NJ_P0021916 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021917.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98681039 98686393 - Hdlbp protein_coding retained_intron MGP_C57BL6NJ_T0021918.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98681429 98719296 - MGP_C57BL6NJ_P0021918 Hdlbp protein_coding protein_coding MGP_C57BL6NJ_T0021919.1 MGP_C57BL6NJ_G0016738.1 mouse_genomes_project 1 98716097 98719299 - Hdlbp protein_coding retained_intron MGP_C57BL6NJ_T0099307.1 MGP_C57BL6NJ_G0037370.1 mouse_genomes_project 1 163108425 163110204 - Gm28791 sense_intronic sense_intronic MGP_C57BL6NJ_T0100905.1 MGP_C57BL6NJ_G0038951.1 mouse_genomes_project 1 135484596 135484705 + Gm23734 snoRNA snoRNA MGP_C57BL6NJ_T0006201.1 MGP_C57BL6NJ_G0005187.1 mouse_genomes_project 1 198633007 198645773 + Gm38093 lincRNA lincRNA MGP_C57BL6NJ_T0023588.1 MGP_C57BL6NJ_G0017085.1 mouse_genomes_project 1 175397601 175409864 + MGP_C57BL6NJ_P0023588 Ccdc181 protein_coding protein_coding MGP_C57BL6NJ_T0020765.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69291927 69545455 + MGP_C57BL6NJ_P0020765 Unc80 protein_coding protein_coding MGP_C57BL6NJ_T0020766.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69291974 69341322 + MGP_C57BL6NJ_P0020766 Unc80 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020767.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69291990 69319189 + Unc80 protein_coding retained_intron MGP_C57BL6NJ_T0020768.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69292007 69544744 + MGP_C57BL6NJ_P0020768 Unc80 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020769.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69518234 69518821 + Unc80 protein_coding retained_intron MGP_C57BL6NJ_T0020770.1 MGP_C57BL6NJ_G0016504.1 mouse_genomes_project 1 69524153 69542252 + MGP_C57BL6NJ_P0020770 Unc80 protein_coding protein_coding MGP_C57BL6NJ_T0003138.1 MGP_C57BL6NJ_G0002931.1 mouse_genomes_project 1 204409848 204410704 - Gm38188 antisense antisense MGP_C57BL6NJ_T0023405.1 MGP_C57BL6NJ_G0017047.1 mouse_genomes_project 1 171778917 171865483 + MGP_C57BL6NJ_P0023405 Rc3h1 protein_coding protein_coding MGP_C57BL6NJ_T0023406.1 MGP_C57BL6NJ_G0017047.1 mouse_genomes_project 1 171811617 171856205 + MGP_C57BL6NJ_P0023406 Rc3h1 protein_coding protein_coding MGP_C57BL6NJ_T0009724.1 MGP_C57BL6NJ_G0007809.1 mouse_genomes_project 1 143547888 143547982 + Gm22232 miRNA miRNA MGP_C57BL6NJ_T0002991.1 MGP_C57BL6NJ_G0002816.1 mouse_genomes_project 1 90849129 90884577 - Gm16341 antisense antisense MGP_C57BL6NJ_T0006054.1 MGP_C57BL6NJ_G0005072.1 mouse_genomes_project 1 132397828 132765879 - lincRNA lincRNA MGP_C57BL6NJ_T0099574.1 MGP_C57BL6NJ_G0037620.1 mouse_genomes_project 1 10153496 10153603 + Gm22633 snRNA snRNA MGP_C57BL6NJ_T0012545.1 MGP_C57BL6NJ_G0010590.1 mouse_genomes_project 1 145352152 145352524 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006033.1 MGP_C57BL6NJ_G0005057.1 mouse_genomes_project 1 126442227 126443604 + Gm26831 lincRNA lincRNA MGP_C57BL6NJ_T0006137.1 MGP_C57BL6NJ_G0005139.1 mouse_genomes_project 1 176130510 176132389 + 1700029M03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006138.1 MGP_C57BL6NJ_G0005139.1 mouse_genomes_project 1 176130512 176130992 + 1700029M03Rik lincRNA lincRNA MGP_C57BL6NJ_T0012654.1 MGP_C57BL6NJ_G0010699.1 mouse_genomes_project 1 195121714 195122707 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012165.1 MGP_C57BL6NJ_G0010210.1 mouse_genomes_project 1 7111740 7112942 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005847.1 MGP_C57BL6NJ_G0004918.1 mouse_genomes_project 1 36883269 36890281 - Gm33533 lincRNA lincRNA MGP_C57BL6NJ_T0006211.1 MGP_C57BL6NJ_G0005195.1 mouse_genomes_project 1 203687876 203713280 - Gm30725 lincRNA lincRNA MGP_C57BL6NJ_T0098927.1 MGP_C57BL6NJ_G0036991.1 mouse_genomes_project 1 86769845 86769943 + n-R5s213 rRNA rRNA MGP_C57BL6NJ_T0012563.1 MGP_C57BL6NJ_G0010608.1 mouse_genomes_project 1 153593299 153594971 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012504.1 MGP_C57BL6NJ_G0010549.1 mouse_genomes_project 1 125109996 125110341 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099632.1 MGP_C57BL6NJ_G0037678.1 mouse_genomes_project 1 145903806 145903866 - Gm23763 snRNA snRNA MGP_C57BL6NJ_T0023741.1 MGP_C57BL6NJ_G0017119.1 mouse_genomes_project 1 179062452 179235735 + MGP_C57BL6NJ_P0023741 Lmx1a protein_coding protein_coding MGP_C57BL6NJ_T0023742.1 MGP_C57BL6NJ_G0017119.1 mouse_genomes_project 1 179062772 179235735 + MGP_C57BL6NJ_P0023742 Lmx1a protein_coding protein_coding MGP_C57BL6NJ_T0021570.1 MGP_C57BL6NJ_G0016658.1 mouse_genomes_project 1 92062942 92071309 - MGP_C57BL6NJ_P0021570 Kcnj13 protein_coding protein_coding MGP_C57BL6NJ_T0021571.1 MGP_C57BL6NJ_G0016658.1 mouse_genomes_project 1 92063581 92065969 - MGP_C57BL6NJ_P0021571 Kcnj13 protein_coding protein_coding MGP_C57BL6NJ_T0000487.1 MGP_C57BL6NJ_G0000406.1 mouse_genomes_project 1 1475332 1476816 - TEC TEC MGP_C57BL6NJ_T0005824.1 MGP_C57BL6NJ_G0004898.1 mouse_genomes_project 1 22033987 22034334 + Gm29107 lincRNA lincRNA MGP_C57BL6NJ_T0021993.1 MGP_C57BL6NJ_G0016756.1 mouse_genomes_project 1 102725744 102804716 - MGP_C57BL6NJ_P0021993 Slco6c1 protein_coding protein_coding MGP_C57BL6NJ_T0021994.1 MGP_C57BL6NJ_G0016756.1 mouse_genomes_project 1 102726220 102804811 - MGP_C57BL6NJ_P0021994 Slco6c1 protein_coding protein_coding MGP_C57BL6NJ_T0011521.1 MGP_C57BL6NJ_G0009606.1 mouse_genomes_project 1 204541694 204541802 + Gm24748 misc_RNA misc_RNA MGP_C57BL6NJ_T0012298.1 MGP_C57BL6NJ_G0010343.1 mouse_genomes_project 1 50073211 50074496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021479.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721866 90820222 + Armc9 protein_coding retained_intron MGP_C57BL6NJ_T0021480.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721870 90787545 + Armc9 protein_coding retained_intron MGP_C57BL6NJ_T0021481.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721870 90833721 + Armc9 protein_coding retained_intron MGP_C57BL6NJ_T0021482.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721872 90737462 + Armc9 protein_coding retained_intron MGP_C57BL6NJ_T0021483.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721884 90752000 + Armc9 protein_coding processed_transcript MGP_C57BL6NJ_T0021484.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721884 90850318 + MGP_C57BL6NJ_P0021484 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021485.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721885 90731968 + MGP_C57BL6NJ_P0021485 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021486.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721896 90851891 + MGP_C57BL6NJ_P0021486 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021487.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721901 90826383 + MGP_C57BL6NJ_P0021487 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021488.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90721905 90749851 + Armc9 protein_coding retained_intron MGP_C57BL6NJ_T0021489.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90770252 90826286 + MGP_C57BL6NJ_P0021489 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021490.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90776358 90826383 + MGP_C57BL6NJ_P0021490 Armc9 protein_coding protein_coding MGP_C57BL6NJ_T0021491.1 MGP_C57BL6NJ_G0016638.1 mouse_genomes_project 1 90818461 90842790 + MGP_C57BL6NJ_P0021491 Armc9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000488.1 MGP_C57BL6NJ_G0000407.1 mouse_genomes_project 1 1906176 1908628 - TEC TEC MGP_C57BL6NJ_T0002953.1 MGP_C57BL6NJ_G0002790.1 mouse_genomes_project 1 60105659 60112940 - Gm17234 antisense antisense MGP_C57BL6NJ_T0012145.1 MGP_C57BL6NJ_G0010190.1 mouse_genomes_project 1 4269666 4269696 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000725.1 MGP_C57BL6NJ_G0000641.1 mouse_genomes_project 1 129303609 129304358 + TEC TEC MGP_C57BL6NJ_T0000780.1 MGP_C57BL6NJ_G0000695.1 mouse_genomes_project 1 146915555 146917547 + TEC TEC MGP_C57BL6NJ_T0024163.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187167400 187579918 - MGP_C57BL6NJ_P0024163 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024164.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187167401 187579694 - MGP_C57BL6NJ_P0024164 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024165.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187167530 187579808 - MGP_C57BL6NJ_P0024165 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024166.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187168049 187194484 - MGP_C57BL6NJ_P0024166 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024167.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187168049 187578548 - MGP_C57BL6NJ_P0024167 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024168.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187168049 187194424 - MGP_C57BL6NJ_P0024168 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024169.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187168050 187187729 - MGP_C57BL6NJ_P0024169 Rgs7 protein_coding protein_coding MGP_C57BL6NJ_T0024170.1 MGP_C57BL6NJ_G0017237.1 mouse_genomes_project 1 187183571 187187249 - Rgs7 protein_coding retained_intron MGP_C57BL6NJ_T0020831.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74745065 74767811 + MGP_C57BL6NJ_P0020831 Atic protein_coding protein_coding MGP_C57BL6NJ_T0020832.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74745094 74751114 + Atic protein_coding retained_intron MGP_C57BL6NJ_T0020833.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74745094 74747867 + Atic protein_coding retained_intron MGP_C57BL6NJ_T0020834.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74745094 74761484 + Atic protein_coding retained_intron MGP_C57BL6NJ_T0020835.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74745128 74751114 + Atic protein_coding retained_intron MGP_C57BL6NJ_T0020836.1 MGP_C57BL6NJ_G0016517.1 mouse_genomes_project 1 74756881 74761081 + Atic protein_coding retained_intron MGP_C57BL6NJ_T0019587.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30346016 30421333 - MGP_C57BL6NJ_P0019587 Phf3 protein_coding protein_coding MGP_C57BL6NJ_T0019588.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30346019 30410213 - MGP_C57BL6NJ_P0019588 Phf3 protein_coding protein_coding MGP_C57BL6NJ_T0019589.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30347223 30362010 - MGP_C57BL6NJ_P0019589 Phf3 protein_coding protein_coding MGP_C57BL6NJ_T0019590.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30349882 30360573 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019591.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30363201 30364833 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019592.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30364868 30421447 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019593.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30366612 30421673 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019594.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30371523 30421556 - MGP_C57BL6NJ_P0019594 Phf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019595.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30372355 30375141 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019596.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30375713 30410027 - Phf3 protein_coding processed_transcript MGP_C57BL6NJ_T0019597.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30380728 30382041 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0019598.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30382502 30421646 - MGP_C57BL6NJ_P0019598 Phf3 protein_coding protein_coding MGP_C57BL6NJ_T0019599.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30410026 30420038 - MGP_C57BL6NJ_P0019599 Phf3 protein_coding protein_coding MGP_C57BL6NJ_T0019600.1 MGP_C57BL6NJ_G0016286.1 mouse_genomes_project 1 30419437 30421227 - Phf3 protein_coding retained_intron MGP_C57BL6NJ_T0021682.1 MGP_C57BL6NJ_G0016687.1 mouse_genomes_project 1 94929915 94933127 - MGP_C57BL6NJ_P0021682 Gbx2 protein_coding protein_coding MGP_C57BL6NJ_T0021683.1 MGP_C57BL6NJ_G0016687.1 mouse_genomes_project 1 94929925 94931145 - Gbx2 protein_coding retained_intron MGP_C57BL6NJ_T0022376.1 MGP_C57BL6NJ_G0016841.1 mouse_genomes_project 1 139048801 139096240 - MGP_C57BL6NJ_P0022376 Gm29427 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024202.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188074787 188419569 - MGP_C57BL6NJ_P0024202 Pld5 protein_coding protein_coding MGP_C57BL6NJ_T0024203.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188074888 188419583 - MGP_C57BL6NJ_P0024203 Pld5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024204.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188076193 188355991 - MGP_C57BL6NJ_P0024204 Pld5 protein_coding protein_coding MGP_C57BL6NJ_T0024205.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188120325 188419546 - Pld5 protein_coding retained_intron MGP_C57BL6NJ_T0024206.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188174192 188355890 - Pld5 protein_coding retained_intron MGP_C57BL6NJ_T0024207.1 MGP_C57BL6NJ_G0017245.1 mouse_genomes_project 1 188405039 188419545 - MGP_C57BL6NJ_P0024207 Pld5 protein_coding protein_coding MGP_C57BL6NJ_T0005822.1 MGP_C57BL6NJ_G0004896.1 mouse_genomes_project 1 20616413 20619102 + Gm26580 lincRNA lincRNA MGP_C57BL6NJ_T0012351.1 MGP_C57BL6NJ_G0010396.1 mouse_genomes_project 1 64625032 64625291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000847.1 MGP_C57BL6NJ_G0000761.1 mouse_genomes_project 1 171622979 171628012 + TEC TEC MGP_C57BL6NJ_T0019569.1 MGP_C57BL6NJ_G0016282.1 mouse_genomes_project 1 23551319 23599703 + MGP_C57BL6NJ_P0019569 Lmbrd1 protein_coding protein_coding MGP_C57BL6NJ_T0019570.1 MGP_C57BL6NJ_G0016282.1 mouse_genomes_project 1 23551398 23623494 + MGP_C57BL6NJ_P0019570 Lmbrd1 protein_coding protein_coding MGP_C57BL6NJ_T0019571.1 MGP_C57BL6NJ_G0016282.1 mouse_genomes_project 1 23551416 23661631 + MGP_C57BL6NJ_P0019571 Lmbrd1 protein_coding protein_coding MGP_C57BL6NJ_T0019572.1 MGP_C57BL6NJ_G0016282.1 mouse_genomes_project 1 23618206 23640118 + Lmbrd1 protein_coding retained_intron MGP_C57BL6NJ_T0019573.1 MGP_C57BL6NJ_G0016282.1 mouse_genomes_project 1 23640042 23661288 + MGP_C57BL6NJ_P0019573 Lmbrd1 protein_coding protein_coding MGP_C57BL6NJ_T0000540.1 MGP_C57BL6NJ_G0000457.1 mouse_genomes_project 1 24285744 24288849 - TEC TEC MGP_C57BL6NJ_T0000934.1 MGP_C57BL6NJ_G0000845.1 mouse_genomes_project 1 208183860 208185716 + TEC TEC MGP_C57BL6NJ_T0020741.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 68984270 69200482 + MGP_C57BL6NJ_P0020741 protein_coding protein_coding MGP_C57BL6NJ_T0020742.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 68984310 69265238 + MGP_C57BL6NJ_P0020742 protein_coding protein_coding MGP_C57BL6NJ_T0020743.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 68984313 69265793 + MGP_C57BL6NJ_P0020743 protein_coding protein_coding MGP_C57BL6NJ_T0020744.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 68984468 69139568 + protein_coding processed_transcript MGP_C57BL6NJ_T0020745.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 68984547 69005484 + protein_coding processed_transcript MGP_C57BL6NJ_T0020746.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69066498 69265791 + MGP_C57BL6NJ_P0020746 protein_coding protein_coding MGP_C57BL6NJ_T0020747.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69066513 69265791 + MGP_C57BL6NJ_P0020747 protein_coding protein_coding MGP_C57BL6NJ_T0020748.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69138847 69262398 + MGP_C57BL6NJ_P0020748 protein_coding protein_coding MGP_C57BL6NJ_T0020749.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69138964 69224858 + protein_coding retained_intron MGP_C57BL6NJ_T0020750.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69139126 69201156 + protein_coding retained_intron MGP_C57BL6NJ_T0020751.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69139230 69222213 + MGP_C57BL6NJ_P0020751 protein_coding protein_coding MGP_C57BL6NJ_T0020752.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69184532 69265793 + MGP_C57BL6NJ_P0020752 protein_coding protein_coding MGP_C57BL6NJ_T0020753.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69184535 69265793 + MGP_C57BL6NJ_P0020753 protein_coding protein_coding MGP_C57BL6NJ_T0020754.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69200376 69234128 + MGP_C57BL6NJ_P0020754 protein_coding protein_coding MGP_C57BL6NJ_T0020755.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69200566 69233657 + MGP_C57BL6NJ_P0020755 protein_coding protein_coding MGP_C57BL6NJ_T0020756.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69206809 69263166 + protein_coding processed_transcript MGP_C57BL6NJ_T0020757.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69206842 69234978 + MGP_C57BL6NJ_P0020757 protein_coding protein_coding MGP_C57BL6NJ_T0020758.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69206849 69228999 + protein_coding processed_transcript MGP_C57BL6NJ_T0020759.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69206875 69222302 + protein_coding retained_intron MGP_C57BL6NJ_T0020760.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69235987 69246841 + protein_coding processed_transcript MGP_C57BL6NJ_T0020761.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69236837 69261514 + MGP_C57BL6NJ_P0020761 protein_coding protein_coding MGP_C57BL6NJ_T0020762.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69236837 69261514 + MGP_C57BL6NJ_P0020762 protein_coding protein_coding MGP_C57BL6NJ_T0020763.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69237517 69261491 + MGP_C57BL6NJ_P0020763 protein_coding protein_coding MGP_C57BL6NJ_T0020764.1 MGP_C57BL6NJ_G0016503.1 mouse_genomes_project 1 69254945 69262663 + MGP_C57BL6NJ_P0020764 protein_coding protein_coding MGP_C57BL6NJ_T0100895.1 MGP_C57BL6NJ_G0038941.1 mouse_genomes_project 1 109076414 109076548 - Gm22034 snoRNA snoRNA MGP_C57BL6NJ_T0102635.1 MGP_C57BL6NJ_G0040430.1 mouse_genomes_project 1 19914995 19916107 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022456.1 MGP_C57BL6NJ_G0016862.1 mouse_genomes_project 1 140204908 140232374 + MGP_C57BL6NJ_P0022456 Slc26a9 protein_coding protein_coding MGP_C57BL6NJ_T0022457.1 MGP_C57BL6NJ_G0016862.1 mouse_genomes_project 1 140204924 140224891 + MGP_C57BL6NJ_P0022457 Slc26a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022458.1 MGP_C57BL6NJ_G0016862.1 mouse_genomes_project 1 140211269 140211974 + Slc26a9 protein_coding retained_intron MGP_C57BL6NJ_T0022459.1 MGP_C57BL6NJ_G0016862.1 mouse_genomes_project 1 140211377 140214917 + MGP_C57BL6NJ_P0022459 Slc26a9 protein_coding protein_coding MGP_C57BL6NJ_T0012409.1 MGP_C57BL6NJ_G0010454.1 mouse_genomes_project 1 87375321 87376117 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012218.1 MGP_C57BL6NJ_G0010263.1 mouse_genomes_project 1 26483348 26483765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012671.1 MGP_C57BL6NJ_G0010716.1 mouse_genomes_project 1 206262778 206263232 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021696.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95652885 95662781 + MGP_C57BL6NJ_P0021696 Cops8 protein_coding protein_coding MGP_C57BL6NJ_T0021697.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95652915 95662563 + Cops8 protein_coding retained_intron MGP_C57BL6NJ_T0021698.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95652917 95660905 + Cops8 protein_coding retained_intron MGP_C57BL6NJ_T0021699.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95652938 95655097 + Cops8 protein_coding retained_intron MGP_C57BL6NJ_T0021700.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95652938 95660476 + Cops8 protein_coding processed_transcript MGP_C57BL6NJ_T0021701.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95659092 95660767 + Cops8 protein_coding retained_intron MGP_C57BL6NJ_T0021702.1 MGP_C57BL6NJ_G0016691.1 mouse_genomes_project 1 95660784 95661832 + Cops8 protein_coding retained_intron MGP_C57BL6NJ_T0012216.1 MGP_C57BL6NJ_G0010261.1 mouse_genomes_project 1 25001467 25002023 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020296.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56947849 57000548 - MGP_C57BL6NJ_P0020296 Sf3b1 protein_coding protein_coding MGP_C57BL6NJ_T0020297.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56947853 56953796 - Sf3b1 protein_coding retained_intron MGP_C57BL6NJ_T0020298.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56951633 56955222 - Sf3b1 protein_coding retained_intron MGP_C57BL6NJ_T0020299.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56971771 57000531 - Sf3b1 protein_coding retained_intron MGP_C57BL6NJ_T0020300.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56976286 56985603 - Sf3b1 protein_coding retained_intron MGP_C57BL6NJ_T0020301.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56982661 57000461 - MGP_C57BL6NJ_P0020301 Sf3b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020302.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56986210 57000440 - Sf3b1 protein_coding processed_transcript MGP_C57BL6NJ_T0020303.1 MGP_C57BL6NJ_G0016419.1 mouse_genomes_project 1 56986340 56987339 - Sf3b1 protein_coding retained_intron MGP_C57BL6NJ_T0019925.1 MGP_C57BL6NJ_G0016344.1 mouse_genomes_project 1 39242355 39253477 + MGP_C57BL6NJ_P0019925 Nms protein_coding protein_coding MGP_C57BL6NJ_T0019926.1 MGP_C57BL6NJ_G0016344.1 mouse_genomes_project 1 39242409 39251844 + MGP_C57BL6NJ_P0019926 Nms protein_coding protein_coding MGP_C57BL6NJ_T0009755.1 MGP_C57BL6NJ_G0007840.1 mouse_genomes_project 1 206977877 206977945 - Mir205 miRNA miRNA MGP_C57BL6NJ_T0099625.1 MGP_C57BL6NJ_G0037671.1 mouse_genomes_project 1 137123541 137123652 - Gm23056 snRNA snRNA MGP_C57BL6NJ_T0000938.1 MGP_C57BL6NJ_G0000849.1 mouse_genomes_project 1 208542072 208545010 + TEC TEC MGP_C57BL6NJ_T0012147.1 MGP_C57BL6NJ_G0010192.1 mouse_genomes_project 1 4359697 4359856 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098923.1 MGP_C57BL6NJ_G0036987.1 mouse_genomes_project 1 37172096 37172215 + n-R5s210 rRNA rRNA MGP_C57BL6NJ_T0100910.1 MGP_C57BL6NJ_G0038956.1 mouse_genomes_project 1 146305760 146305857 - Gm23534 snoRNA snoRNA MGP_C57BL6NJ_T0012345.1 MGP_C57BL6NJ_G0010390.1 mouse_genomes_project 1 63417765 63418001 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022448.1 MGP_C57BL6NJ_G0016860.1 mouse_genomes_project 1 140099240 140135235 + MGP_C57BL6NJ_P0022448 Ctse protein_coding protein_coding MGP_C57BL6NJ_T0022449.1 MGP_C57BL6NJ_G0016860.1 mouse_genomes_project 1 140099428 140135233 + MGP_C57BL6NJ_P0022449 Ctse protein_coding protein_coding MGP_C57BL6NJ_T0022450.1 MGP_C57BL6NJ_G0016860.1 mouse_genomes_project 1 140121654 140125190 + Ctse protein_coding retained_intron MGP_C57BL6NJ_T0012663.1 MGP_C57BL6NJ_G0010708.1 mouse_genomes_project 1 202878766 202878907 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002935.1 MGP_C57BL6NJ_G0002775.1 mouse_genomes_project 1 39179604 39184211 + Gm37707 antisense antisense MGP_C57BL6NJ_T0020220.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54570452 54574199 + Hibch protein_coding retained_intron MGP_C57BL6NJ_T0020221.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54570501 54652935 + MGP_C57BL6NJ_P0020221 Hibch protein_coding protein_coding MGP_C57BL6NJ_T0020222.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54570567 54617147 + Hibch protein_coding retained_intron MGP_C57BL6NJ_T0020223.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54577273 54588227 + Hibch protein_coding processed_transcript MGP_C57BL6NJ_T0020224.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54594633 54628866 + Hibch protein_coding processed_transcript MGP_C57BL6NJ_T0020225.1 MGP_C57BL6NJ_G0016402.1 mouse_genomes_project 1 54630178 54646386 + Hibch protein_coding retained_intron MGP_C57BL6NJ_T0019686.1 MGP_C57BL6NJ_G0016303.1 mouse_genomes_project 1 34453895 34473510 - MGP_C57BL6NJ_P0019686 Prss40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019687.1 MGP_C57BL6NJ_G0016303.1 mouse_genomes_project 1 34463272 34470678 - MGP_C57BL6NJ_P0019687 Prss40 protein_coding protein_coding MGP_C57BL6NJ_T0019688.1 MGP_C57BL6NJ_G0016303.1 mouse_genomes_project 1 34463272 34473487 - MGP_C57BL6NJ_P0019688 Prss40 protein_coding protein_coding MGP_C57BL6NJ_T0021030.1 MGP_C57BL6NJ_G0016555.1 mouse_genomes_project 1 78411221 78414020 + MGP_C57BL6NJ_P0021030 Cdk5r2 protein_coding protein_coding MGP_C57BL6NJ_T0023771.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181656321 181693198 - MGP_C57BL6NJ_P0023771 Uap1 protein_coding protein_coding MGP_C57BL6NJ_T0023772.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181656385 181693187 - MGP_C57BL6NJ_P0023772 Uap1 protein_coding protein_coding MGP_C57BL6NJ_T0023773.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181656386 181693187 - MGP_C57BL6NJ_P0023773 Uap1 protein_coding protein_coding MGP_C57BL6NJ_T0023774.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181656417 181658097 - Uap1 protein_coding retained_intron MGP_C57BL6NJ_T0023775.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181665535 181693033 - Uap1 protein_coding retained_intron MGP_C57BL6NJ_T0023776.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181678128 181678704 - Uap1 protein_coding processed_transcript MGP_C57BL6NJ_T0023777.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181678146 181693007 - Uap1 protein_coding processed_transcript MGP_C57BL6NJ_T0023778.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181683065 181693030 - Uap1 protein_coding retained_intron MGP_C57BL6NJ_T0023779.1 MGP_C57BL6NJ_G0017127.1 mouse_genomes_project 1 181687606 181693127 - Uap1 protein_coding processed_transcript MGP_C57BL6NJ_T0023072.1 MGP_C57BL6NJ_G0016987.1 mouse_genomes_project 1 161919688 161983052 + MGP_C57BL6NJ_P0023072 Edem3 protein_coding protein_coding MGP_C57BL6NJ_T0023073.1 MGP_C57BL6NJ_G0016987.1 mouse_genomes_project 1 161919691 161986168 + MGP_C57BL6NJ_P0023073 Edem3 protein_coding protein_coding MGP_C57BL6NJ_T0023074.1 MGP_C57BL6NJ_G0016987.1 mouse_genomes_project 1 161919777 161983096 + MGP_C57BL6NJ_P0023074 Edem3 protein_coding protein_coding MGP_C57BL6NJ_T0023075.1 MGP_C57BL6NJ_G0016987.1 mouse_genomes_project 1 161919777 161983096 + MGP_C57BL6NJ_P0023075 Edem3 protein_coding protein_coding MGP_C57BL6NJ_T0002954.1 MGP_C57BL6NJ_G0002791.1 mouse_genomes_project 1 60462146 60530391 - Gm15759 antisense antisense MGP_C57BL6NJ_T0000886.1 MGP_C57BL6NJ_G0000800.1 mouse_genomes_project 1 189325167 189326460 - TEC TEC MGP_C57BL6NJ_T0099569.1 MGP_C57BL6NJ_G0037615.1 mouse_genomes_project 1 1840402 1840505 - Gm25493 snRNA snRNA MGP_C57BL6NJ_T0005973.1 MGP_C57BL6NJ_G0005005.1 mouse_genomes_project 1 87248510 87249467 - Krtap28-10 lincRNA lincRNA MGP_C57BL6NJ_T0002904.1 MGP_C57BL6NJ_G0002752.1 mouse_genomes_project 1 14344269 14349411 + Gm7568 antisense antisense MGP_C57BL6NJ_T0002905.1 MGP_C57BL6NJ_G0002752.1 mouse_genomes_project 1 14344269 14359173 + Gm7568 antisense antisense MGP_C57BL6NJ_T0002906.1 MGP_C57BL6NJ_G0002752.1 mouse_genomes_project 1 14344306 14349407 + Gm7568 antisense antisense MGP_C57BL6NJ_T0006219.1 MGP_C57BL6NJ_G0005202.1 mouse_genomes_project 1 204878184 204881180 - Gm37432 lincRNA lincRNA MGP_C57BL6NJ_T0012380.1 MGP_C57BL6NJ_G0010425.1 mouse_genomes_project 1 74909289 74909640 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012211.1 MGP_C57BL6NJ_G0010256.1 mouse_genomes_project 1 22949088 22949955 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012308.1 MGP_C57BL6NJ_G0010353.1 mouse_genomes_project 1 52116757 52116919 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022061.1 MGP_C57BL6NJ_G0016768.1 mouse_genomes_project 1 112279136 112324254 + MGP_C57BL6NJ_P0022061 Zcchc2 protein_coding protein_coding MGP_C57BL6NJ_T0022062.1 MGP_C57BL6NJ_G0016768.1 mouse_genomes_project 1 112279419 112324247 + MGP_C57BL6NJ_P0022062 Zcchc2 protein_coding protein_coding MGP_C57BL6NJ_T0022063.1 MGP_C57BL6NJ_G0016768.1 mouse_genomes_project 1 112294308 112322628 + MGP_C57BL6NJ_P0022063 Zcchc2 protein_coding protein_coding MGP_C57BL6NJ_T0022064.1 MGP_C57BL6NJ_G0016768.1 mouse_genomes_project 1 112294323 112317681 + MGP_C57BL6NJ_P0022064 Zcchc2 protein_coding protein_coding MGP_C57BL6NJ_T0022065.1 MGP_C57BL6NJ_G0016768.1 mouse_genomes_project 1 112301930 112313444 + MGP_C57BL6NJ_P0022065 Zcchc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021166.1 MGP_C57BL6NJ_G0016576.1 mouse_genomes_project 1 78880029 78888280 + MGP_C57BL6NJ_P0021166 Des protein_coding protein_coding MGP_C57BL6NJ_T0021167.1 MGP_C57BL6NJ_G0016576.1 mouse_genomes_project 1 78881226 78882104 + Des protein_coding retained_intron MGP_C57BL6NJ_T0021168.1 MGP_C57BL6NJ_G0016576.1 mouse_genomes_project 1 78881730 78883339 + Des protein_coding retained_intron MGP_C57BL6NJ_T0006067.1 MGP_C57BL6NJ_G0005084.1 mouse_genomes_project 1 142623100 142635488 + Gm1627 lincRNA lincRNA MGP_C57BL6NJ_T0003126.1 MGP_C57BL6NJ_G0002921.1 mouse_genomes_project 1 200123064 200125779 + 1700007P06Rik antisense antisense MGP_C57BL6NJ_T0102688.1 MGP_C57BL6NJ_G0040483.1 mouse_genomes_project 1 184883275 184884134 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0023623.1 MGP_C57BL6NJ_G0017094.1 mouse_genomes_project 1 176507771 176534944 + MGP_C57BL6NJ_P0023623 Gpr161 protein_coding protein_coding MGP_C57BL6NJ_T0023624.1 MGP_C57BL6NJ_G0017094.1 mouse_genomes_project 1 176514597 176539892 + MGP_C57BL6NJ_P0023624 Gpr161 protein_coding protein_coding MGP_C57BL6NJ_T0006055.1 MGP_C57BL6NJ_G0005073.1 mouse_genomes_project 1 133123404 133129446 - 1700121L03Rik lincRNA lincRNA MGP_C57BL6NJ_T0099641.1 MGP_C57BL6NJ_G0037687.1 mouse_genomes_project 1 166417642 166417791 + Gm23744 snRNA snRNA MGP_C57BL6NJ_T0000814.1 MGP_C57BL6NJ_G0000728.1 mouse_genomes_project 1 163168311 163168749 + TEC TEC MGP_C57BL6NJ_T0019574.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985123 24163821 - MGP_C57BL6NJ_P0019574 Adgrb3 protein_coding protein_coding MGP_C57BL6NJ_T0019575.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985197 24811957 - MGP_C57BL6NJ_P0019575 Adgrb3 protein_coding protein_coding MGP_C57BL6NJ_T0019576.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985197 24815329 - MGP_C57BL6NJ_P0019576 Adgrb3 protein_coding protein_coding MGP_C57BL6NJ_T0019577.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985197 24815525 - MGP_C57BL6NJ_P0019577 Adgrb3 protein_coding protein_coding MGP_C57BL6NJ_T0019578.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985325 24812578 - MGP_C57BL6NJ_P0019578 Adgrb3 protein_coding protein_coding MGP_C57BL6NJ_T0019579.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 23985338 24164095 - Adgrb3 protein_coding retained_intron MGP_C57BL6NJ_T0019580.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 24008851 24164041 - Adgrb3 protein_coding retained_intron MGP_C57BL6NJ_T0019581.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 24047181 24134372 - Adgrb3 protein_coding processed_transcript MGP_C57BL6NJ_T0019582.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 24131760 24135345 - Adgrb3 protein_coding retained_intron MGP_C57BL6NJ_T0019583.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 24152394 24163822 - Adgrb3 protein_coding retained_intron MGP_C57BL6NJ_T0019584.1 MGP_C57BL6NJ_G0016283.1 mouse_genomes_project 1 24437714 24812165 - Adgrb3 protein_coding retained_intron MGP_C57BL6NJ_T0000510.1 MGP_C57BL6NJ_G0000429.1 mouse_genomes_project 1 11105865 11107491 - TEC TEC MGP_C57BL6NJ_T0006210.1 MGP_C57BL6NJ_G0005194.1 mouse_genomes_project 1 203668242 203685712 + Gm29678 lincRNA lincRNA MGP_C57BL6NJ_T0009742.1 MGP_C57BL6NJ_G0007827.1 mouse_genomes_project 1 182707332 182707394 - Gm27844 miRNA miRNA MGP_C57BL6NJ_T0021325.1 MGP_C57BL6NJ_G0016604.1 mouse_genomes_project 1 86344305 86404098 - MGP_C57BL6NJ_P0021325 Irs1 protein_coding protein_coding MGP_C57BL6NJ_T0019345.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8659663 8981505 + MGP_C57BL6NJ_P0019345 Prex2 protein_coding protein_coding MGP_C57BL6NJ_T0019346.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8659716 8662902 + Prex2 protein_coding retained_intron MGP_C57BL6NJ_T0019347.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8770749 8824572 + Prex2 protein_coding retained_intron MGP_C57BL6NJ_T0019348.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8814172 8835168 + Prex2 protein_coding retained_intron MGP_C57BL6NJ_T0019351.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8941638 8975714 + MGP_C57BL6NJ_P0019351 Prex2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019352.1 MGP_C57BL6NJ_G0016228.1 mouse_genomes_project 1 8960122 8975913 + MGP_C57BL6NJ_P0019352 Prex2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020805.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578172 72738763 - MGP_C57BL6NJ_P0020805 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020806.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578717 72740123 - MGP_C57BL6NJ_P0020806 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020807.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578903 72737035 - MGP_C57BL6NJ_P0020807 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020808.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578903 72737035 - MGP_C57BL6NJ_P0020808 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020809.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578903 72740157 - MGP_C57BL6NJ_P0020809 Ikzf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020810.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72578903 72737035 - MGP_C57BL6NJ_P0020810 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020811.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72618771 72738177 - MGP_C57BL6NJ_P0020811 Ikzf2 protein_coding protein_coding MGP_C57BL6NJ_T0020812.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72734431 72737414 - Ikzf2 protein_coding retained_intron MGP_C57BL6NJ_T0020813.1 MGP_C57BL6NJ_G0016512.1 mouse_genomes_project 1 72734432 72740018 - Ikzf2 protein_coding retained_intron MGP_C57BL6NJ_T0023221.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166234472 166237867 - Qsox1 protein_coding retained_intron MGP_C57BL6NJ_T0023222.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166236601 166271323 - MGP_C57BL6NJ_P0023222 Qsox1 protein_coding protein_coding MGP_C57BL6NJ_T0023223.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166236602 166271285 - MGP_C57BL6NJ_P0023223 Qsox1 protein_coding protein_coding MGP_C57BL6NJ_T0023224.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166236605 166271278 - MGP_C57BL6NJ_P0023224 Qsox1 protein_coding protein_coding MGP_C57BL6NJ_T0023225.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166238362 166240440 - Qsox1 protein_coding processed_transcript MGP_C57BL6NJ_T0023226.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166252612 166271254 - Qsox1 protein_coding retained_intron MGP_C57BL6NJ_T0023227.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166252786 166253861 - Qsox1 protein_coding retained_intron MGP_C57BL6NJ_T0023228.1 MGP_C57BL6NJ_G0017019.1 mouse_genomes_project 1 166259880 166271272 - Qsox1 protein_coding retained_intron MGP_C57BL6NJ_T0005972.1 MGP_C57BL6NJ_G0005004.1 mouse_genomes_project 1 86968662 86969256 + Gm28942 lincRNA lincRNA MGP_C57BL6NJ_T0012196.1 MGP_C57BL6NJ_G0010241.1 mouse_genomes_project 1 17711286 17711758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102384.1 MGP_C57BL6NJ_G0040318.1 mouse_genomes_project 1 102560512 102651538 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102385.1 MGP_C57BL6NJ_G0040318.1 mouse_genomes_project 1 102576733 102651198 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0024176.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187717089 187761609 + MGP_C57BL6NJ_P0024176 Kmo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024177.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728704 187762500 + MGP_C57BL6NJ_P0024177 Kmo protein_coding protein_coding MGP_C57BL6NJ_T0024178.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728709 187755747 + Kmo protein_coding retained_intron MGP_C57BL6NJ_T0024179.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728734 187736883 + Kmo protein_coding processed_transcript MGP_C57BL6NJ_T0024180.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728888 187763763 + MGP_C57BL6NJ_P0024180 Kmo protein_coding protein_coding MGP_C57BL6NJ_T0024181.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728928 187761469 + MGP_C57BL6NJ_P0024181 Kmo protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024182.1 MGP_C57BL6NJ_G0017239.1 mouse_genomes_project 1 187728947 187750271 + Kmo protein_coding processed_transcript MGP_C57BL6NJ_T0100876.1 MGP_C57BL6NJ_G0038922.1 mouse_genomes_project 1 65587173 65587287 + Gm24942 snoRNA snoRNA MGP_C57BL6NJ_T0024650.1 MGP_C57BL6NJ_G0017334.1 mouse_genomes_project 1 204267414 204304441 - MGP_C57BL6NJ_P0024650 Vash2 protein_coding protein_coding MGP_C57BL6NJ_T0024651.1 MGP_C57BL6NJ_G0017334.1 mouse_genomes_project 1 204267416 204304147 - MGP_C57BL6NJ_P0024651 Vash2 protein_coding protein_coding MGP_C57BL6NJ_T0024652.1 MGP_C57BL6NJ_G0017334.1 mouse_genomes_project 1 204298046 204304359 - Vash2 protein_coding processed_transcript MGP_C57BL6NJ_T0000688.1 MGP_C57BL6NJ_G0000604.1 mouse_genomes_project 1 92555943 92556787 + TEC TEC MGP_C57BL6NJ_T0020442.1 MGP_C57BL6NJ_G0016447.1 mouse_genomes_project 1 60908537 60949249 - MGP_C57BL6NJ_P0020442 Als2cr12 protein_coding protein_coding MGP_C57BL6NJ_T0020443.1 MGP_C57BL6NJ_G0016447.1 mouse_genomes_project 1 60908751 60949220 - Als2cr12 protein_coding retained_intron MGP_C57BL6NJ_T0020444.1 MGP_C57BL6NJ_G0016447.1 mouse_genomes_project 1 60919090 60942404 - Als2cr12 protein_coding retained_intron MGP_C57BL6NJ_T0002993.1 MGP_C57BL6NJ_G0002818.1 mouse_genomes_project 1 91589343 91740343 - Gm28375 antisense antisense MGP_C57BL6NJ_T0000850.1 MGP_C57BL6NJ_G0000764.1 mouse_genomes_project 1 171792115 171795693 + TEC TEC MGP_C57BL6NJ_T0020596.1 MGP_C57BL6NJ_G0016470.1 mouse_genomes_project 1 63157517 63206529 + Cd28 protein_coding processed_transcript MGP_C57BL6NJ_T0020597.1 MGP_C57BL6NJ_G0016470.1 mouse_genomes_project 1 63189741 63216713 + MGP_C57BL6NJ_P0020597 Cd28 protein_coding protein_coding MGP_C57BL6NJ_T0020598.1 MGP_C57BL6NJ_G0016470.1 mouse_genomes_project 1 63189785 63207992 + Cd28 protein_coding retained_intron MGP_C57BL6NJ_T0006182.1 MGP_C57BL6NJ_G0005175.1 mouse_genomes_project 1 196665491 196666317 + Gm38108 lincRNA lincRNA MGP_C57BL6NJ_T0012312.1 MGP_C57BL6NJ_G0010357.1 mouse_genomes_project 1 53993999 53995398 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003024.1 MGP_C57BL6NJ_G0002842.1 mouse_genomes_project 1 138834360 138934445 + antisense antisense MGP_C57BL6NJ_T0020214.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54499804 54535229 - MGP_C57BL6NJ_P0020214 Inpp1 protein_coding protein_coding MGP_C57BL6NJ_T0020215.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54504352 54514173 - MGP_C57BL6NJ_P0020215 Inpp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020216.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54504740 54509733 - Inpp1 protein_coding retained_intron MGP_C57BL6NJ_T0020217.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54509349 54535109 - MGP_C57BL6NJ_P0020217 Inpp1 protein_coding protein_coding MGP_C57BL6NJ_T0020218.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54511663 54534992 - Inpp1 protein_coding retained_intron MGP_C57BL6NJ_T0020219.1 MGP_C57BL6NJ_G0016401.1 mouse_genomes_project 1 54511750 54515056 - MGP_C57BL6NJ_P0020219 Inpp1 protein_coding protein_coding MGP_C57BL6NJ_T0000551.1 MGP_C57BL6NJ_G0000468.1 mouse_genomes_project 1 24788259 24792374 - TEC TEC MGP_C57BL6NJ_T0102386.1 MGP_C57BL6NJ_G0040319.1 mouse_genomes_project 1 103046613 103158828 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102387.1 MGP_C57BL6NJ_G0040319.1 mouse_genomes_project 1 103148532 103277645 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0000754.1 MGP_C57BL6NJ_G0000670.1 mouse_genomes_project 1 138839755 138842004 + TEC TEC MGP_C57BL6NJ_T0003050.1 MGP_C57BL6NJ_G0002862.1 mouse_genomes_project 1 149797464 149899238 - 4930590L20Rik antisense antisense MGP_C57BL6NJ_T0024142.1 MGP_C57BL6NJ_G0017224.1 mouse_genomes_project 1 186201812 186202736 - MGP_C57BL6NJ_P0024142 Olfr231 protein_coding protein_coding MGP_C57BL6NJ_T0000623.1 MGP_C57BL6NJ_G0000539.1 mouse_genomes_project 1 64198972 64200337 + TEC TEC MGP_C57BL6NJ_T0012598.1 MGP_C57BL6NJ_G0010643.1 mouse_genomes_project 1 168210081 168210603 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006076.1 MGP_C57BL6NJ_G0005093.1 mouse_genomes_project 1 145480025 145482578 - Platr23 lincRNA lincRNA MGP_C57BL6NJ_T0022372.1 MGP_C57BL6NJ_G0016840.1 mouse_genomes_project 1 139010850 139038324 - MGP_C57BL6NJ_P0022372 C4bp protein_coding protein_coding MGP_C57BL6NJ_T0022373.1 MGP_C57BL6NJ_G0016840.1 mouse_genomes_project 1 139012891 139024451 - MGP_C57BL6NJ_P0022373 C4bp protein_coding protein_coding MGP_C57BL6NJ_T0022374.1 MGP_C57BL6NJ_G0016840.1 mouse_genomes_project 1 139019089 139038302 - MGP_C57BL6NJ_P0022374 C4bp protein_coding protein_coding MGP_C57BL6NJ_T0022375.1 MGP_C57BL6NJ_G0016840.1 mouse_genomes_project 1 139034471 139038316 - C4bp protein_coding retained_intron MGP_C57BL6NJ_T0006160.1 MGP_C57BL6NJ_G0005159.1 mouse_genomes_project 1 189793618 189799122 - Gm37280 lincRNA lincRNA MGP_C57BL6NJ_T0099606.1 MGP_C57BL6NJ_G0037652.1 mouse_genomes_project 1 81619664 81619828 - Gm26263 snRNA snRNA MGP_C57BL6NJ_T0023175.1 MGP_C57BL6NJ_G0017010.1 mouse_genomes_project 1 164569148 164573633 + MGP_C57BL6NJ_P0023175 Zfp648 protein_coding protein_coding MGP_C57BL6NJ_T0009677.1 MGP_C57BL6NJ_G0007762.1 mouse_genomes_project 1 52635692 52644181 + miRNA miRNA MGP_C57BL6NJ_T0012572.1 MGP_C57BL6NJ_G0010617.1 mouse_genomes_project 1 158535145 158535935 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020059.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862421 44877996 - MGP_C57BL6NJ_P0020059 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020060.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862424 44878043 - MGP_C57BL6NJ_P0020060 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020061.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862618 44877967 - MGP_C57BL6NJ_P0020061 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020062.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862618 44877948 - MGP_C57BL6NJ_P0020062 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020063.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862668 44878028 - MGP_C57BL6NJ_P0020063 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020064.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862669 44878046 - MGP_C57BL6NJ_P0020064 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020065.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862675 44877284 - MGP_C57BL6NJ_P0020065 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020066.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44862837 44878038 - MGP_C57BL6NJ_P0020066 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020067.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44863709 44878006 - MGP_C57BL6NJ_P0020067 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020068.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44863825 44877618 - MGP_C57BL6NJ_P0020068 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020069.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44864310 44878019 - MGP_C57BL6NJ_P0020069 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020070.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44864316 44878042 - MGP_C57BL6NJ_P0020070 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0020071.1 MGP_C57BL6NJ_G0016377.1 mouse_genomes_project 1 44864322 44875609 - MGP_C57BL6NJ_P0020071 Tex30 protein_coding protein_coding MGP_C57BL6NJ_T0012134.1 MGP_C57BL6NJ_G0010179.1 mouse_genomes_project 1 2084449 2084721 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002938.1 MGP_C57BL6NJ_G0002778.1 mouse_genomes_project 1 40996795 41006288 - Gm35801 antisense antisense MGP_C57BL6NJ_T0002939.1 MGP_C57BL6NJ_G0002778.1 mouse_genomes_project 1 40996815 41006274 - Gm35801 antisense antisense MGP_C57BL6NJ_T0099580.1 MGP_C57BL6NJ_G0037626.1 mouse_genomes_project 1 31918164 31918271 - Gm25814 snRNA snRNA MGP_C57BL6NJ_T0012521.1 MGP_C57BL6NJ_G0010566.1 mouse_genomes_project 1 129592125 129593433 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019258.1 MGP_C57BL6NJ_G0016214.1 mouse_genomes_project 1 6342558 6343213 + MGP_C57BL6NJ_P0019258 protein_coding protein_coding MGP_C57BL6NJ_T0003030.1 MGP_C57BL6NJ_G0002846.1 mouse_genomes_project 1 139693671 139698722 + Gm28913 antisense antisense MGP_C57BL6NJ_T0023128.1 MGP_C57BL6NJ_G0016999.1 mouse_genomes_project 1 163723812 163751253 + MGP_C57BL6NJ_P0023128 Shcbp1l protein_coding protein_coding MGP_C57BL6NJ_T0023129.1 MGP_C57BL6NJ_G0016999.1 mouse_genomes_project 1 163723822 163738616 + MGP_C57BL6NJ_P0023129 Shcbp1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023130.1 MGP_C57BL6NJ_G0016999.1 mouse_genomes_project 1 163744041 163747672 + Shcbp1l protein_coding retained_intron MGP_C57BL6NJ_T0012142.1 MGP_C57BL6NJ_G0010187.1 mouse_genomes_project 1 4258191 4263072 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023117.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163375285 163447458 - MGP_C57BL6NJ_P0023117 Lamc2 protein_coding protein_coding MGP_C57BL6NJ_T0023118.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163375285 163447058 - MGP_C57BL6NJ_P0023118 Lamc2 protein_coding protein_coding MGP_C57BL6NJ_T0023119.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163376702 163379764 - Lamc2 protein_coding retained_intron MGP_C57BL6NJ_T0023120.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163378627 163381532 - MGP_C57BL6NJ_P0023120 Lamc2 protein_coding protein_coding MGP_C57BL6NJ_T0023121.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163406389 163408276 - Lamc2 protein_coding retained_intron MGP_C57BL6NJ_T0023122.1 MGP_C57BL6NJ_G0016997.1 mouse_genomes_project 1 163413498 163447458 - Lamc2 protein_coding retained_intron MGP_C57BL6NJ_T0024005.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183884741 183893255 + MGP_C57BL6NJ_P0024005 Pex19 protein_coding protein_coding MGP_C57BL6NJ_T0024006.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183884742 183888998 + Pex19 protein_coding retained_intron MGP_C57BL6NJ_T0024007.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183884748 183894465 + MGP_C57BL6NJ_P0024007 Pex19 protein_coding protein_coding MGP_C57BL6NJ_T0024008.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183884759 183888182 + Pex19 protein_coding retained_intron MGP_C57BL6NJ_T0024009.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183884759 183886909 + Pex19 protein_coding retained_intron MGP_C57BL6NJ_T0024010.1 MGP_C57BL6NJ_G0017180.1 mouse_genomes_project 1 183891931 183892672 + Pex19 protein_coding retained_intron MGP_C57BL6NJ_T0005919.1 MGP_C57BL6NJ_G0004965.1 mouse_genomes_project 1 65682049 65698058 + lincRNA lincRNA MGP_C57BL6NJ_T0024183.1 MGP_C57BL6NJ_G0017240.1 mouse_genomes_project 1 187764067 187794434 - MGP_C57BL6NJ_P0024183 Opn3 protein_coding protein_coding MGP_C57BL6NJ_T0100938.1 MGP_C57BL6NJ_G0038984.1 mouse_genomes_project 1 199640846 199640981 + Gm26169 snoRNA snoRNA MGP_C57BL6NJ_T0000802.1 MGP_C57BL6NJ_G0000716.1 mouse_genomes_project 1 156732645 156734544 + TEC TEC MGP_C57BL6NJ_T0022983.1 MGP_C57BL6NJ_G0016973.1 mouse_genomes_project 1 154146417 154180022 - MGP_C57BL6NJ_P0022983 Rgs18 protein_coding protein_coding MGP_C57BL6NJ_T0020906.1 MGP_C57BL6NJ_G0016533.1 mouse_genomes_project 1 77683994 77686841 - MGP_C57BL6NJ_P0020906 Cxcr1 protein_coding protein_coding MGP_C57BL6NJ_T0020907.1 MGP_C57BL6NJ_G0016533.1 mouse_genomes_project 1 77683994 77685445 - MGP_C57BL6NJ_P0020907 Cxcr1 protein_coding protein_coding MGP_C57BL6NJ_T0021805.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97582044 97616816 - MGP_C57BL6NJ_P0021805 Ndufa10 protein_coding protein_coding MGP_C57BL6NJ_T0021806.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97582313 97616713 - MGP_C57BL6NJ_P0021806 Ndufa10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021807.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97582876 97603726 - Ndufa10 protein_coding retained_intron MGP_C57BL6NJ_T0021808.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97595087 97605998 - Ndufa10 protein_coding processed_transcript MGP_C57BL6NJ_T0021809.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97605230 97613871 - Ndufa10 protein_coding retained_intron MGP_C57BL6NJ_T0021810.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97606111 97614060 - Ndufa10 protein_coding retained_intron MGP_C57BL6NJ_T0021811.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97610423 97616703 - MGP_C57BL6NJ_P0021811 Ndufa10 protein_coding protein_coding MGP_C57BL6NJ_T0021812.1 MGP_C57BL6NJ_G0016711.1 mouse_genomes_project 1 97615734 97616723 - Ndufa10 protein_coding retained_intron MGP_C57BL6NJ_T0000941.1 MGP_C57BL6NJ_G0000852.1 mouse_genomes_project 1 208630513 208632914 - TEC TEC MGP_C57BL6NJ_T0006007.1 MGP_C57BL6NJ_G0005036.1 mouse_genomes_project 1 101265134 101284916 - 4930598F16Rik lincRNA lincRNA MGP_C57BL6NJ_T0022597.1 MGP_C57BL6NJ_G0016891.1 mouse_genomes_project 1 141992114 142005117 - MGP_C57BL6NJ_P0022597 Sox13 protein_coding protein_coding MGP_C57BL6NJ_T0022598.1 MGP_C57BL6NJ_G0016891.1 mouse_genomes_project 1 141992114 142037465 - MGP_C57BL6NJ_P0022598 Sox13 protein_coding protein_coding MGP_C57BL6NJ_T0022599.1 MGP_C57BL6NJ_G0016891.1 mouse_genomes_project 1 141993462 142005169 - MGP_C57BL6NJ_P0022599 Sox13 protein_coding protein_coding MGP_C57BL6NJ_T0022600.1 MGP_C57BL6NJ_G0016891.1 mouse_genomes_project 1 141993789 141995338 - Sox13 protein_coding retained_intron MGP_C57BL6NJ_T0022601.1 MGP_C57BL6NJ_G0016891.1 mouse_genomes_project 1 141994348 141996246 - Sox13 protein_coding retained_intron MGP_C57BL6NJ_T0000558.1 MGP_C57BL6NJ_G0000475.1 mouse_genomes_project 1 32203803 32205612 + TEC TEC MGP_C57BL6NJ_T0022126.1 MGP_C57BL6NJ_G0016790.1 mouse_genomes_project 1 124876421 125130567 + MGP_C57BL6NJ_P0022126 Gm28363 protein_coding protein_coding MGP_C57BL6NJ_T0022340.1 MGP_C57BL6NJ_G0016831.1 mouse_genomes_project 1 136420499 136437001 + MGP_C57BL6NJ_P0022340 Ubxn4 protein_coding protein_coding MGP_C57BL6NJ_T0022341.1 MGP_C57BL6NJ_G0016831.1 mouse_genomes_project 1 136420697 136456926 + MGP_C57BL6NJ_P0022341 Ubxn4 protein_coding protein_coding MGP_C57BL6NJ_T0022342.1 MGP_C57BL6NJ_G0016831.1 mouse_genomes_project 1 136436969 136450714 + Ubxn4 protein_coding retained_intron MGP_C57BL6NJ_T0022343.1 MGP_C57BL6NJ_G0016831.1 mouse_genomes_project 1 136452174 136454568 + Ubxn4 protein_coding retained_intron MGP_C57BL6NJ_T0002969.1 MGP_C57BL6NJ_G0002802.1 mouse_genomes_project 1 69139404 69147364 - Gm10558 antisense antisense MGP_C57BL6NJ_T0012275.1 MGP_C57BL6NJ_G0010320.1 mouse_genomes_project 1 44990163 44991120 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000625.1 MGP_C57BL6NJ_G0000541.1 mouse_genomes_project 1 64777506 64780024 + TEC TEC MGP_C57BL6NJ_T0003019.1 MGP_C57BL6NJ_G0002838.1 mouse_genomes_project 1 129056326 129060234 - Gm15392 antisense antisense MGP_C57BL6NJ_T0012458.1 MGP_C57BL6NJ_G0010503.1 mouse_genomes_project 1 107323476 107323925 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012247.1 MGP_C57BL6NJ_G0010292.1 mouse_genomes_project 1 34521345 34521768 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000836.1 MGP_C57BL6NJ_G0000750.1 mouse_genomes_project 1 169982465 169985314 + TEC TEC MGP_C57BL6NJ_T0012602.1 MGP_C57BL6NJ_G0010647.1 mouse_genomes_project 1 169911157 169911640 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006016.1 MGP_C57BL6NJ_G0005043.1 mouse_genomes_project 1 107102464 107127312 + Gm20268 lincRNA lincRNA MGP_C57BL6NJ_T0006183.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197124632 197158076 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0006184.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197124632 197158105 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0006185.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197124632 197158108 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0006186.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197124636 197162632 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0006187.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197124647 197162660 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0006189.1 MGP_C57BL6NJ_G0005176.1 mouse_genomes_project 1 197150238 197162632 + Gm37223 lincRNA lincRNA MGP_C57BL6NJ_T0012429.1 MGP_C57BL6NJ_G0010474.1 mouse_genomes_project 1 92729661 92731803 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024411.1 MGP_C57BL6NJ_G0017286.1 mouse_genomes_project 1 194143155 194144974 - MGP_C57BL6NJ_P0024411 Ccdc121 protein_coding protein_coding MGP_C57BL6NJ_T0012637.1 MGP_C57BL6NJ_G0010682.1 mouse_genomes_project 1 184586416 184586849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000704.1 MGP_C57BL6NJ_G0000620.1 mouse_genomes_project 1 101925443 101927737 + TEC TEC MGP_C57BL6NJ_T0023503.1 MGP_C57BL6NJ_G0017064.1 mouse_genomes_project 1 173641629 173652081 + MGP_C57BL6NJ_P0023503 Myoc protein_coding protein_coding MGP_C57BL6NJ_T0006174.1 MGP_C57BL6NJ_G0005168.1 mouse_genomes_project 1 194524128 194525744 - Gm5533 lincRNA lincRNA MGP_C57BL6NJ_T0024703.1 MGP_C57BL6NJ_G0017347.1 mouse_genomes_project 1 205120256 205121821 + MGP_C57BL6NJ_P0024703 Lpgat1 protein_coding protein_coding MGP_C57BL6NJ_T0024704.1 MGP_C57BL6NJ_G0017347.1 mouse_genomes_project 1 205120256 205196645 + MGP_C57BL6NJ_P0024704 Lpgat1 protein_coding protein_coding MGP_C57BL6NJ_T0024705.1 MGP_C57BL6NJ_G0017347.1 mouse_genomes_project 1 205120449 205122209 + Lpgat1 protein_coding retained_intron MGP_C57BL6NJ_T0024706.1 MGP_C57BL6NJ_G0017347.1 mouse_genomes_project 1 205120811 205189137 + MGP_C57BL6NJ_P0024706 Lpgat1 protein_coding protein_coding MGP_C57BL6NJ_T0024707.1 MGP_C57BL6NJ_G0017347.1 mouse_genomes_project 1 205120943 205169356 + MGP_C57BL6NJ_P0024707 Lpgat1 protein_coding protein_coding MGP_C57BL6NJ_T0021054.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655570 78660697 + MGP_C57BL6NJ_P0021054 Fam134a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021055.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655578 78660701 + MGP_C57BL6NJ_P0021055 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0021056.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655586 78660697 + MGP_C57BL6NJ_P0021056 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0021057.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655772 78657452 + MGP_C57BL6NJ_P0021057 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0021058.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655957 78660695 + MGP_C57BL6NJ_P0021058 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0021059.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78655974 78657165 + MGP_C57BL6NJ_P0021059 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0021060.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78656170 78656897 + Fam134a protein_coding retained_intron MGP_C57BL6NJ_T0021061.1 MGP_C57BL6NJ_G0016563.1 mouse_genomes_project 1 78658091 78658549 + MGP_C57BL6NJ_P0021061 Fam134a protein_coding protein_coding MGP_C57BL6NJ_T0020610.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236527 65286717 + Nrp2 protein_coding retained_intron MGP_C57BL6NJ_T0020611.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236527 65366416 + MGP_C57BL6NJ_P0020611 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0020612.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236527 65366416 + MGP_C57BL6NJ_P0020612 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0020613.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236944 65366416 + MGP_C57BL6NJ_P0020613 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0020614.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236944 65344496 + MGP_C57BL6NJ_P0020614 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0020615.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236944 65366416 + MGP_C57BL6NJ_P0020615 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0020616.1 MGP_C57BL6NJ_G0016474.1 mouse_genomes_project 1 65236944 65346789 + MGP_C57BL6NJ_P0020616 Nrp2 protein_coding protein_coding MGP_C57BL6NJ_T0024104.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185258100 185386443 + MGP_C57BL6NJ_P0024104 Aim2 protein_coding protein_coding MGP_C57BL6NJ_T0024105.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185325748 185334332 + Aim2 protein_coding processed_transcript MGP_C57BL6NJ_T0024106.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185327148 185367326 + MGP_C57BL6NJ_P0024106 Aim2 protein_coding protein_coding MGP_C57BL6NJ_T0024107.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185362621 185363246 + MGP_C57BL6NJ_P0024107 Aim2 protein_coding protein_coding MGP_C57BL6NJ_T0024108.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185363004 185382443 + Aim2 protein_coding processed_transcript MGP_C57BL6NJ_T0024109.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185363004 185386435 + MGP_C57BL6NJ_P0024109 Aim2 protein_coding protein_coding MGP_C57BL6NJ_T0024110.1 MGP_C57BL6NJ_G0017209.1 mouse_genomes_project 1 185363138 185363816 + Aim2 protein_coding processed_transcript MGP_C57BL6NJ_T0022707.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143484933 143703950 - MGP_C57BL6NJ_P0022707 Ppp1r12b protein_coding protein_coding MGP_C57BL6NJ_T0022708.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143485843 143490629 - Ppp1r12b protein_coding processed_transcript MGP_C57BL6NJ_T0022709.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143489342 143587530 - Ppp1r12b protein_coding processed_transcript MGP_C57BL6NJ_T0022710.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143490244 143703861 - MGP_C57BL6NJ_P0022710 Ppp1r12b protein_coding protein_coding MGP_C57BL6NJ_T0022711.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143497780 143703950 - MGP_C57BL6NJ_P0022711 Ppp1r12b protein_coding protein_coding MGP_C57BL6NJ_T0022712.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143513234 143542050 - Ppp1r12b protein_coding retained_intron MGP_C57BL6NJ_T0022713.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143516801 143519152 - Ppp1r12b protein_coding retained_intron MGP_C57BL6NJ_T0022714.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143575172 143576930 - Ppp1r12b protein_coding processed_transcript MGP_C57BL6NJ_T0022715.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143575175 143703938 - Ppp1r12b protein_coding retained_intron MGP_C57BL6NJ_T0022716.1 MGP_C57BL6NJ_G0016917.1 mouse_genomes_project 1 143694862 143703952 - MGP_C57BL6NJ_P0022716 Ppp1r12b protein_coding protein_coding MGP_C57BL6NJ_T0100919.1 MGP_C57BL6NJ_G0038965.1 mouse_genomes_project 1 171496189 171496321 + Gm23528 snoRNA snoRNA MGP_C57BL6NJ_T0012342.1 MGP_C57BL6NJ_G0010387.1 mouse_genomes_project 1 63235815 63237158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000500.1 MGP_C57BL6NJ_G0000419.1 mouse_genomes_project 1 7568755 7571262 + TEC TEC MGP_C57BL6NJ_T0005897.1 MGP_C57BL6NJ_G0004948.1 mouse_genomes_project 1 58628724 58630777 + Gm28240 lincRNA lincRNA MGP_C57BL6NJ_T0005964.1 MGP_C57BL6NJ_G0004999.1 mouse_genomes_project 1 82661933 82663328 + Gm29187 lincRNA lincRNA MGP_C57BL6NJ_T0023982.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183748069 183776359 - MGP_C57BL6NJ_P0023982 Vangl2 protein_coding protein_coding MGP_C57BL6NJ_T0023983.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183748069 183775210 - MGP_C57BL6NJ_P0023983 Vangl2 protein_coding protein_coding MGP_C57BL6NJ_T0023984.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183751538 183775210 - MGP_C57BL6NJ_P0023984 Vangl2 protein_coding protein_coding MGP_C57BL6NJ_T0023985.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183751872 183756139 - Vangl2 protein_coding processed_transcript MGP_C57BL6NJ_T0023986.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183756978 183774626 - MGP_C57BL6NJ_P0023986 Vangl2 protein_coding protein_coding MGP_C57BL6NJ_T0023987.1 MGP_C57BL6NJ_G0017176.1 mouse_genomes_project 1 183757061 183775183 - MGP_C57BL6NJ_P0023987 Vangl2 protein_coding protein_coding MGP_C57BL6NJ_T0020253.1 MGP_C57BL6NJ_G0016410.1 mouse_genomes_project 1 55048525 55076932 - MGP_C57BL6NJ_P0020253 Gm28551 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102661.1 MGP_C57BL6NJ_G0040456.1 mouse_genomes_project 1 97754209 97754392 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012310.1 MGP_C57BL6NJ_G0010355.1 mouse_genomes_project 1 53615394 53615806 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009735.1 MGP_C57BL6NJ_G0007820.1 mouse_genomes_project 1 173193851 173193961 + Mir214 miRNA miRNA MGP_C57BL6NJ_T0102120.1 MGP_C57BL6NJ_G0040166.1 mouse_genomes_project 1 4258191 4263070 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0000618.1 MGP_C57BL6NJ_G0000534.1 mouse_genomes_project 1 63339602 63341003 + TEC TEC MGP_C57BL6NJ_T0012223.1 MGP_C57BL6NJ_G0010268.1 mouse_genomes_project 1 28251386 28251690 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099585.1 MGP_C57BL6NJ_G0037631.1 mouse_genomes_project 1 33836080 33836173 - Gm23792 snRNA snRNA MGP_C57BL6NJ_T0012368.1 MGP_C57BL6NJ_G0010413.1 mouse_genomes_project 1 68828026 68828769 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021223.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79062929 79078874 + MGP_C57BL6NJ_P0021223 Stk11ip protein_coding protein_coding MGP_C57BL6NJ_T0021224.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79062952 79078460 + MGP_C57BL6NJ_P0021224 Stk11ip protein_coding protein_coding MGP_C57BL6NJ_T0021225.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79063191 79078463 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021226.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79063211 79068513 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021227.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79069705 79070884 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021228.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79070040 79078463 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021229.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79071074 79073738 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021230.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79073931 79075654 + Stk11ip protein_coding retained_intron MGP_C57BL6NJ_T0021231.1 MGP_C57BL6NJ_G0016584.1 mouse_genomes_project 1 79074438 79075185 + Stk11ip protein_coding processed_transcript MGP_C57BL6NJ_T0012144.1 MGP_C57BL6NJ_G0010189.1 mouse_genomes_project 1 4258246 4263072 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012470.1 MGP_C57BL6NJ_G0010515.1 mouse_genomes_project 1 112031452 112031683 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017470.1 MGP_C57BL6NJ_G0015495.1 mouse_genomes_project 1 78407198 78435913 + Gm16582 processed_transcript processed_transcript MGP_C57BL6NJ_T0006165.1 MGP_C57BL6NJ_G0005163.1 mouse_genomes_project 1 193236435 193241614 - Gm38293 lincRNA lincRNA MGP_C57BL6NJ_T0000692.1 MGP_C57BL6NJ_G0000608.1 mouse_genomes_project 1 94822258 94824287 + TEC TEC MGP_C57BL6NJ_T0000547.1 MGP_C57BL6NJ_G0000464.1 mouse_genomes_project 1 24715330 24718911 - TEC TEC MGP_C57BL6NJ_T0012282.1 MGP_C57BL6NJ_G0010327.1 mouse_genomes_project 1 46006081 46007021 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012597.1 MGP_C57BL6NJ_G0010642.1 mouse_genomes_project 1 167981780 167982179 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021429.1 MGP_C57BL6NJ_G0016626.1 mouse_genomes_project 1 90162699 90169642 + MGP_C57BL6NJ_P0021429 protein_coding protein_coding MGP_C57BL6NJ_T0000609.1 MGP_C57BL6NJ_G0000525.1 mouse_genomes_project 1 61069169 61073308 + TEC TEC MGP_C57BL6NJ_T0006101.1 MGP_C57BL6NJ_G0005112.1 mouse_genomes_project 1 164040625 164057713 - C230024C17Rik lincRNA lincRNA MGP_C57BL6NJ_T0102644.1 MGP_C57BL6NJ_G0040439.1 mouse_genomes_project 1 68181500 68182180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000670.1 MGP_C57BL6NJ_G0000586.1 mouse_genomes_project 1 87562114 87563403 - TEC TEC MGP_C57BL6NJ_T0098935.1 MGP_C57BL6NJ_G0036999.1 mouse_genomes_project 1 146987089 146987209 - Gm23782 rRNA rRNA MGP_C57BL6NJ_T0023902.1 MGP_C57BL6NJ_G0017156.1 mouse_genomes_project 1 182961933 182968643 - MGP_C57BL6NJ_P0023902 Ufc1 protein_coding protein_coding MGP_C57BL6NJ_T0023903.1 MGP_C57BL6NJ_G0017156.1 mouse_genomes_project 1 182961935 182963811 - Ufc1 protein_coding retained_intron MGP_C57BL6NJ_T0023904.1 MGP_C57BL6NJ_G0017156.1 mouse_genomes_project 1 182962064 182968560 - MGP_C57BL6NJ_P0023904 Ufc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023905.1 MGP_C57BL6NJ_G0017156.1 mouse_genomes_project 1 182962082 182968606 - MGP_C57BL6NJ_P0023905 Ufc1 protein_coding protein_coding MGP_C57BL6NJ_T0023906.1 MGP_C57BL6NJ_G0017156.1 mouse_genomes_project 1 182962147 182968559 - Ufc1 protein_coding retained_intron MGP_C57BL6NJ_T0023010.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160415175 160475203 + MGP_C57BL6NJ_P0023010 Tpr protein_coding protein_coding MGP_C57BL6NJ_T0023011.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160415587 160475323 + MGP_C57BL6NJ_P0023011 Tpr protein_coding protein_coding MGP_C57BL6NJ_T0023012.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160415721 160417833 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023013.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160434278 160436245 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023014.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160437069 160438685 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023015.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160449616 160453231 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023016.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160454241 160465703 + MGP_C57BL6NJ_P0023016 Tpr protein_coding protein_coding MGP_C57BL6NJ_T0023017.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160455276 160465700 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023018.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160462286 160468610 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023019.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160464319 160475315 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023020.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160465584 160475315 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023021.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160471305 160475315 + MGP_C57BL6NJ_P0023021 Tpr protein_coding protein_coding MGP_C57BL6NJ_T0023022.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160472842 160475317 + Tpr protein_coding retained_intron MGP_C57BL6NJ_T0023023.1 MGP_C57BL6NJ_G0016979.1 mouse_genomes_project 1 160474258 160475179 + Tpr protein_coding processed_transcript MGP_C57BL6NJ_T0023168.1 MGP_C57BL6NJ_G0017008.1 mouse_genomes_project 1 164228908 164235568 + MGP_C57BL6NJ_P0023168 Teddm1a protein_coding protein_coding MGP_C57BL6NJ_T0012499.1 MGP_C57BL6NJ_G0010544.1 mouse_genomes_project 1 122204713 122205287 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019364.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10518254 10689547 + MGP_C57BL6NJ_P0019364 Sulf1 protein_coding protein_coding MGP_C57BL6NJ_T0019365.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10545764 10657071 + Sulf1 protein_coding retained_intron MGP_C57BL6NJ_T0019366.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10546769 10619124 + MGP_C57BL6NJ_P0019366 Sulf1 protein_coding protein_coding MGP_C57BL6NJ_T0019367.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10555416 10619214 + MGP_C57BL6NJ_P0019367 Sulf1 protein_coding protein_coding MGP_C57BL6NJ_T0019368.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10618017 10621393 + Sulf1 protein_coding retained_intron MGP_C57BL6NJ_T0019369.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10618109 10696658 + MGP_C57BL6NJ_P0019369 Sulf1 protein_coding protein_coding MGP_C57BL6NJ_T0019370.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10671365 10675835 + Sulf1 protein_coding retained_intron MGP_C57BL6NJ_T0019371.1 MGP_C57BL6NJ_G0016230.1 mouse_genomes_project 1 10679926 10698221 + MGP_C57BL6NJ_P0019371 Sulf1 protein_coding protein_coding MGP_C57BL6NJ_T0019927.1 MGP_C57BL6NJ_G0016345.1 mouse_genomes_project 1 39288716 39296724 + MGP_C57BL6NJ_P0019927 Pdcl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019928.1 MGP_C57BL6NJ_G0016345.1 mouse_genomes_project 1 39288719 39298450 + MGP_C57BL6NJ_P0019928 Pdcl3 protein_coding protein_coding MGP_C57BL6NJ_T0019929.1 MGP_C57BL6NJ_G0016345.1 mouse_genomes_project 1 39296966 39298453 + Pdcl3 protein_coding retained_intron MGP_C57BL6NJ_T0002970.1 MGP_C57BL6NJ_G0002803.1 mouse_genomes_project 1 72554086 72587843 + Gm29114 antisense antisense MGP_C57BL6NJ_T0020015.1 MGP_C57BL6NJ_G0016367.1 mouse_genomes_project 1 43646390 43648709 + Gpr45 protein_coding processed_transcript MGP_C57BL6NJ_T0020016.1 MGP_C57BL6NJ_G0016367.1 mouse_genomes_project 1 43646481 43732706 + MGP_C57BL6NJ_P0020016 Gpr45 protein_coding protein_coding MGP_C57BL6NJ_T0020017.1 MGP_C57BL6NJ_G0016367.1 mouse_genomes_project 1 43646692 43726676 + Gpr45 protein_coding processed_transcript MGP_C57BL6NJ_T0020018.1 MGP_C57BL6NJ_G0016367.1 mouse_genomes_project 1 43646735 43647432 + Gpr45 protein_coding processed_transcript MGP_C57BL6NJ_T0020019.1 MGP_C57BL6NJ_G0016367.1 mouse_genomes_project 1 43729309 43730855 + MGP_C57BL6NJ_P0020019 Gpr45 protein_coding protein_coding MGP_C57BL6NJ_T0012456.1 MGP_C57BL6NJ_G0010501.1 mouse_genomes_project 1 106534525 106535192 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099618.1 MGP_C57BL6NJ_G0037664.1 mouse_genomes_project 1 124731232 124731396 + Gm24030 snRNA snRNA MGP_C57BL6NJ_T0023662.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177041932 177132972 + MGP_C57BL6NJ_P0023662 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023663.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177041932 177132972 + MGP_C57BL6NJ_P0023663 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023664.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177041932 177132972 + MGP_C57BL6NJ_P0023664 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023665.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177041940 177123883 + MGP_C57BL6NJ_P0023665 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023666.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177041974 177129255 + MGP_C57BL6NJ_P0023666 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023667.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177042016 177130913 + MGP_C57BL6NJ_P0023667 Cd247 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023668.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177042016 177132068 + MGP_C57BL6NJ_P0023668 Cd247 protein_coding protein_coding MGP_C57BL6NJ_T0023669.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177120032 177123372 + Cd247 protein_coding retained_intron MGP_C57BL6NJ_T0023670.1 MGP_C57BL6NJ_G0017101.1 mouse_genomes_project 1 177126473 177139096 + Cd247 protein_coding processed_transcript MGP_C57BL6NJ_T0100917.1 MGP_C57BL6NJ_G0038963.1 mouse_genomes_project 1 164445807 164445912 - Gm25336 snoRNA snoRNA MGP_C57BL6NJ_T0022927.1 MGP_C57BL6NJ_G0016962.1 mouse_genomes_project 1 149273988 149371775 - MGP_C57BL6NJ_P0022927 protein_coding protein_coding MGP_C57BL6NJ_T0022928.1 MGP_C57BL6NJ_G0016962.1 mouse_genomes_project 1 149274998 149371717 - MGP_C57BL6NJ_P0022928 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022929.1 MGP_C57BL6NJ_G0016962.1 mouse_genomes_project 1 149334411 149371906 - protein_coding retained_intron MGP_C57BL6NJ_T0022930.1 MGP_C57BL6NJ_G0016962.1 mouse_genomes_project 1 149371628 149372259 - protein_coding retained_intron MGP_C57BL6NJ_T0020696.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67484035 67658902 - MGP_C57BL6NJ_P0020696 Plekhm3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020697.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67487203 67658902 - MGP_C57BL6NJ_P0020697 Plekhm3 protein_coding protein_coding MGP_C57BL6NJ_T0020698.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67491891 67532828 - Plekhm3 protein_coding processed_transcript MGP_C57BL6NJ_T0020699.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67559691 67627351 - Plekhm3 protein_coding retained_intron MGP_C57BL6NJ_T0020700.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67637257 67658853 - MGP_C57BL6NJ_P0020700 Plekhm3 protein_coding protein_coding MGP_C57BL6NJ_T0020701.1 MGP_C57BL6NJ_G0016490.1 mouse_genomes_project 1 67655240 67658805 - Plekhm3 protein_coding processed_transcript MGP_C57BL6NJ_T0000869.1 MGP_C57BL6NJ_G0000783.1 mouse_genomes_project 1 180112997 180113608 - TEC TEC MGP_C57BL6NJ_T0099648.1 MGP_C57BL6NJ_G0037694.1 mouse_genomes_project 1 182632922 182633087 + Gm26110 snRNA snRNA MGP_C57BL6NJ_T0009725.1 MGP_C57BL6NJ_G0007810.1 mouse_genomes_project 1 144254364 144254445 - Mir1231 miRNA miRNA MGP_C57BL6NJ_T0012389.1 MGP_C57BL6NJ_G0010434.1 mouse_genomes_project 1 79187987 79188777 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022941.1 MGP_C57BL6NJ_G0016965.1 mouse_genomes_project 1 152984640 152999818 + MGP_C57BL6NJ_P0022941 B3galt2 protein_coding protein_coding MGP_C57BL6NJ_T0099575.1 MGP_C57BL6NJ_G0037621.1 mouse_genomes_project 1 11215491 11215603 - Gm23169 snRNA snRNA MGP_C57BL6NJ_T0024277.1 MGP_C57BL6NJ_G0017260.1 mouse_genomes_project 1 191935614 192016614 + MGP_C57BL6NJ_P0024277 Cnst protein_coding protein_coding MGP_C57BL6NJ_T0024278.1 MGP_C57BL6NJ_G0017260.1 mouse_genomes_project 1 191935743 191973030 + Cnst protein_coding retained_intron MGP_C57BL6NJ_T0024279.1 MGP_C57BL6NJ_G0017260.1 mouse_genomes_project 1 191935753 191992425 + Cnst protein_coding retained_intron MGP_C57BL6NJ_T0024280.1 MGP_C57BL6NJ_G0017260.1 mouse_genomes_project 1 191983483 191994529 + Cnst protein_coding processed_transcript MGP_C57BL6NJ_T0006116.1 MGP_C57BL6NJ_G0005123.1 mouse_genomes_project 1 169700229 169712992 - 1600012P17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006117.1 MGP_C57BL6NJ_G0005123.1 mouse_genomes_project 1 169702136 169712600 - 1600012P17Rik lincRNA lincRNA MGP_C57BL6NJ_T0023142.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163971380 164019721 + MGP_C57BL6NJ_P0023142 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023143.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163979739 164010418 + MGP_C57BL6NJ_P0023143 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023144.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163983155 164012383 + MGP_C57BL6NJ_P0023144 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023145.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163983813 164012175 + MGP_C57BL6NJ_P0023145 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023146.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163983851 164014976 + MGP_C57BL6NJ_P0023146 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023147.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163984132 164010468 + MGP_C57BL6NJ_P0023147 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023148.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163984196 164010473 + MGP_C57BL6NJ_P0023148 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023149.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163984212 164012344 + MGP_C57BL6NJ_P0023149 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023150.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163984248 164017065 + MGP_C57BL6NJ_P0023150 Rgs8 protein_coding protein_coding MGP_C57BL6NJ_T0023151.1 MGP_C57BL6NJ_G0017002.1 mouse_genomes_project 1 163986028 163989106 + Rgs8 protein_coding processed_transcript MGP_C57BL6NJ_T0000532.1 MGP_C57BL6NJ_G0000450.1 mouse_genomes_project 1 22821060 22821450 + TEC TEC MGP_C57BL6NJ_T0000533.1 MGP_C57BL6NJ_G0000450.1 mouse_genomes_project 1 22821062 22821450 + TEC TEC MGP_C57BL6NJ_T0099620.1 MGP_C57BL6NJ_G0037666.1 mouse_genomes_project 1 126037618 126037748 + Gm23497 snRNA snRNA MGP_C57BL6NJ_T0011506.1 MGP_C57BL6NJ_G0009591.1 mouse_genomes_project 1 72984248 72984523 - Gm22665 misc_RNA misc_RNA MGP_C57BL6NJ_T0023690.1 MGP_C57BL6NJ_G0017104.1 mouse_genomes_project 1 177401277 177441924 + MGP_C57BL6NJ_P0023690 Gpa33 protein_coding protein_coding MGP_C57BL6NJ_T0023691.1 MGP_C57BL6NJ_G0017104.1 mouse_genomes_project 1 177401379 177432946 + MGP_C57BL6NJ_P0023691 Gpa33 protein_coding protein_coding MGP_C57BL6NJ_T0023692.1 MGP_C57BL6NJ_G0017104.1 mouse_genomes_project 1 177401456 177429553 + Gpa33 protein_coding processed_transcript MGP_C57BL6NJ_T0023693.1 MGP_C57BL6NJ_G0017104.1 mouse_genomes_project 1 177401506 177441923 + MGP_C57BL6NJ_P0023693 Gpa33 protein_coding protein_coding MGP_C57BL6NJ_T0006106.1 MGP_C57BL6NJ_G0005116.1 mouse_genomes_project 1 164403447 164485412 - A830008E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0006107.1 MGP_C57BL6NJ_G0005116.1 mouse_genomes_project 1 164413943 164487210 - A830008E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0022958.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153125936 153161404 + MGP_C57BL6NJ_P0022958 Uchl5 protein_coding protein_coding MGP_C57BL6NJ_T0022959.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153125940 153132907 + Uchl5 protein_coding retained_intron MGP_C57BL6NJ_T0022960.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153125945 153161565 + MGP_C57BL6NJ_P0022960 Uchl5 protein_coding protein_coding MGP_C57BL6NJ_T0022961.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153125969 153134994 + Uchl5 protein_coding retained_intron MGP_C57BL6NJ_T0022962.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153125985 153154092 + MGP_C57BL6NJ_P0022962 Uchl5 protein_coding protein_coding MGP_C57BL6NJ_T0022963.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153132289 153145236 + Uchl5 protein_coding retained_intron MGP_C57BL6NJ_T0022964.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153145132 153147461 + Uchl5 protein_coding retained_intron MGP_C57BL6NJ_T0022965.1 MGP_C57BL6NJ_G0016968.1 mouse_genomes_project 1 153145174 153161040 + MGP_C57BL6NJ_P0022965 Uchl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019872.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38124344 38134512 + MGP_C57BL6NJ_P0019872 Mrpl30 protein_coding protein_coding MGP_C57BL6NJ_T0019873.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38124399 38134341 + MGP_C57BL6NJ_P0019873 Mrpl30 protein_coding protein_coding MGP_C57BL6NJ_T0019874.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38124400 38127114 + Mrpl30 protein_coding retained_intron MGP_C57BL6NJ_T0019875.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38124410 38127852 + MGP_C57BL6NJ_P0019875 Mrpl30 protein_coding protein_coding MGP_C57BL6NJ_T0019876.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38126800 38134142 + MGP_C57BL6NJ_P0019876 Mrpl30 protein_coding protein_coding MGP_C57BL6NJ_T0019877.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38127802 38134315 + MGP_C57BL6NJ_P0019877 Mrpl30 protein_coding protein_coding MGP_C57BL6NJ_T0019878.1 MGP_C57BL6NJ_G0016335.1 mouse_genomes_project 1 38133232 38134102 + Mrpl30 protein_coding retained_intron MGP_C57BL6NJ_T0023556.1 MGP_C57BL6NJ_G0017076.1 mouse_genomes_project 1 174882038 175023465 + MGP_C57BL6NJ_P0023556 Kifap3 protein_coding protein_coding MGP_C57BL6NJ_T0023557.1 MGP_C57BL6NJ_G0017076.1 mouse_genomes_project 1 174882038 175023465 + MGP_C57BL6NJ_P0023557 Kifap3 protein_coding protein_coding MGP_C57BL6NJ_T0012508.1 MGP_C57BL6NJ_G0010553.1 mouse_genomes_project 1 126184285 126184603 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023554.1 MGP_C57BL6NJ_G0017075.1 mouse_genomes_project 1 174794643 174812861 - MGP_C57BL6NJ_P0023554 Mettl11b protein_coding protein_coding MGP_C57BL6NJ_T0023555.1 MGP_C57BL6NJ_G0017075.1 mouse_genomes_project 1 174795386 174812861 - MGP_C57BL6NJ_P0023555 Mettl11b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003102.1 MGP_C57BL6NJ_G0002900.1 mouse_genomes_project 1 183848113 183850883 - Gm37756 antisense antisense MGP_C57BL6NJ_T0099292.1 MGP_C57BL6NJ_G0037356.1 mouse_genomes_project 1 72637832 72641319 - Gm29112 sense_intronic sense_intronic MGP_C57BL6NJ_T0005943.1 MGP_C57BL6NJ_G0004983.1 mouse_genomes_project 1 76702837 76736118 + Gm29185 lincRNA lincRNA MGP_C57BL6NJ_T0000582.1 MGP_C57BL6NJ_G0000498.1 mouse_genomes_project 1 37919482 37921700 - TEC TEC MGP_C57BL6NJ_T0100918.1 MGP_C57BL6NJ_G0038964.1 mouse_genomes_project 1 170773869 170773979 - Gm24719 snoRNA snoRNA MGP_C57BL6NJ_T0019855.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 37984636 38097771 - MGP_C57BL6NJ_P0019855 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019856.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 37990683 38099121 - MGP_C57BL6NJ_P0019856 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019857.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 37990683 38088066 - MGP_C57BL6NJ_P0019857 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019858.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 38023020 38088039 - MGP_C57BL6NJ_P0019858 Tsga10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019859.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 38064298 38097528 - MGP_C57BL6NJ_P0019859 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019860.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 38065330 38097765 - MGP_C57BL6NJ_P0019860 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019861.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 38066166 38097765 - MGP_C57BL6NJ_P0019861 Tsga10 protein_coding protein_coding MGP_C57BL6NJ_T0019862.1 MGP_C57BL6NJ_G0016332.1 mouse_genomes_project 1 38072882 38076413 - Tsga10 protein_coding retained_intron MGP_C57BL6NJ_T0006175.1 MGP_C57BL6NJ_G0005169.1 mouse_genomes_project 1 195011035 195031526 + 1700047M11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006176.1 MGP_C57BL6NJ_G0005169.1 mouse_genomes_project 1 195029034 195031488 + 1700047M11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006070.1 MGP_C57BL6NJ_G0005087.1 mouse_genomes_project 1 144405763 144497915 - Gm38399 lincRNA lincRNA MGP_C57BL6NJ_T0100894.1 MGP_C57BL6NJ_G0038940.1 mouse_genomes_project 1 108444064 108444163 - Gm23036 snoRNA snoRNA MGP_C57BL6NJ_T0005862.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43255225 43366694 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005863.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314923 43363499 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005864.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314929 43334631 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005865.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314930 43318410 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005866.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314930 43366711 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005867.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314930 43366711 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005868.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314930 43363524 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005869.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314931 43363464 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005870.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43314931 43335312 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005871.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43315108 43334552 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005872.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43334491 43366728 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0005873.1 MGP_C57BL6NJ_G0004929.1 mouse_genomes_project 1 43363397 43366711 - Pantr1 lincRNA lincRNA MGP_C57BL6NJ_T0000580.1 MGP_C57BL6NJ_G0000496.1 mouse_genomes_project 1 37695781 37698536 - TEC TEC MGP_C57BL6NJ_T0005908.1 MGP_C57BL6NJ_G0004957.1 mouse_genomes_project 1 63749408 63755632 - Gm28083 lincRNA lincRNA MGP_C57BL6NJ_T0021995.1 MGP_C57BL6NJ_G0016757.1 mouse_genomes_project 1 103313859 103372567 - MGP_C57BL6NJ_P0021995 D1Ertd622e protein_coding protein_coding MGP_C57BL6NJ_T0021996.1 MGP_C57BL6NJ_G0016757.1 mouse_genomes_project 1 103353120 103372567 - MGP_C57BL6NJ_P0021996 D1Ertd622e protein_coding protein_coding MGP_C57BL6NJ_T0021997.1 MGP_C57BL6NJ_G0016757.1 mouse_genomes_project 1 103353120 103372169 - MGP_C57BL6NJ_P0021997 D1Ertd622e protein_coding protein_coding MGP_C57BL6NJ_T0021998.1 MGP_C57BL6NJ_G0016757.1 mouse_genomes_project 1 103356463 103372169 - MGP_C57BL6NJ_P0021998 D1Ertd622e protein_coding protein_coding MGP_C57BL6NJ_T0000852.1 MGP_C57BL6NJ_G0000766.1 mouse_genomes_project 1 171898334 171899163 - TEC TEC MGP_C57BL6NJ_T0020020.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43744395 43799345 - MGP_C57BL6NJ_P0020020 Tgfbrap1 protein_coding protein_coding MGP_C57BL6NJ_T0020021.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43744415 43793458 - MGP_C57BL6NJ_P0020021 Tgfbrap1 protein_coding protein_coding MGP_C57BL6NJ_T0020022.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43751903 43758129 - Tgfbrap1 protein_coding retained_intron MGP_C57BL6NJ_T0020023.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43757086 43793176 - MGP_C57BL6NJ_P0020023 Tgfbrap1 protein_coding protein_coding MGP_C57BL6NJ_T0020024.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43772235 43799331 - MGP_C57BL6NJ_P0020024 Tgfbrap1 protein_coding protein_coding MGP_C57BL6NJ_T0020025.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43774980 43793192 - Tgfbrap1 protein_coding retained_intron MGP_C57BL6NJ_T0020026.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43775221 43799360 - Tgfbrap1 protein_coding retained_intron MGP_C57BL6NJ_T0020027.1 MGP_C57BL6NJ_G0016368.1 mouse_genomes_project 1 43776355 43799087 - MGP_C57BL6NJ_P0020027 Tgfbrap1 protein_coding protein_coding MGP_C57BL6NJ_T0022248.1 MGP_C57BL6NJ_G0016815.1 mouse_genomes_project 1 129079390 129112034 - MGP_C57BL6NJ_P0022248 Htr5b protein_coding protein_coding MGP_C57BL6NJ_T0019416.1 MGP_C57BL6NJ_G0016243.1 mouse_genomes_project 1 14142253 14163618 - MGP_C57BL6NJ_P0019416 4930444P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0019417.1 MGP_C57BL6NJ_G0016243.1 mouse_genomes_project 1 14142253 14176192 - MGP_C57BL6NJ_P0019417 4930444P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0019418.1 MGP_C57BL6NJ_G0016243.1 mouse_genomes_project 1 14142253 14176192 - MGP_C57BL6NJ_P0019418 4930444P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0020136.1 MGP_C57BL6NJ_G0016391.1 mouse_genomes_project 1 52518158 52532429 + Tmeff2 protein_coding processed_transcript MGP_C57BL6NJ_T0020137.1 MGP_C57BL6NJ_G0016391.1 mouse_genomes_project 1 52518158 52533877 + Tmeff2 protein_coding processed_transcript MGP_C57BL6NJ_T0020138.1 MGP_C57BL6NJ_G0016391.1 mouse_genomes_project 1 52527400 52600371 + MGP_C57BL6NJ_P0020138 Tmeff2 protein_coding protein_coding MGP_C57BL6NJ_T0020139.1 MGP_C57BL6NJ_G0016391.1 mouse_genomes_project 1 52547088 52835644 + MGP_C57BL6NJ_P0020139 Tmeff2 protein_coding protein_coding MGP_C57BL6NJ_T0017490.1 MGP_C57BL6NJ_G0015504.1 mouse_genomes_project 1 140990851 141001454 - 6030442K20Rik processed_transcript antisense MGP_C57BL6NJ_T0017491.1 MGP_C57BL6NJ_G0015504.1 mouse_genomes_project 1 141000467 141001473 - 6030442K20Rik processed_transcript retained_intron MGP_C57BL6NJ_T0000661.1 MGP_C57BL6NJ_G0000577.1 mouse_genomes_project 1 84287827 84289645 - TEC TEC MGP_C57BL6NJ_T0021694.1 MGP_C57BL6NJ_G0016690.1 mouse_genomes_project 1 95233941 95246709 + MGP_C57BL6NJ_P0021694 Ackr3 protein_coding protein_coding MGP_C57BL6NJ_T0021695.1 MGP_C57BL6NJ_G0016690.1 mouse_genomes_project 1 95233967 95243791 + MGP_C57BL6NJ_P0021695 Ackr3 protein_coding protein_coding MGP_C57BL6NJ_T0012280.1 MGP_C57BL6NJ_G0010325.1 mouse_genomes_project 1 45688397 45689064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022728.1 MGP_C57BL6NJ_G0016921.1 mouse_genomes_project 1 143910324 143921455 + MGP_C57BL6NJ_P0022728 Arl8a protein_coding protein_coding MGP_C57BL6NJ_T0022729.1 MGP_C57BL6NJ_G0016921.1 mouse_genomes_project 1 143911169 143921455 + MGP_C57BL6NJ_P0022729 Arl8a protein_coding protein_coding MGP_C57BL6NJ_T0022730.1 MGP_C57BL6NJ_G0016921.1 mouse_genomes_project 1 143915538 143917752 + Arl8a protein_coding retained_intron MGP_C57BL6NJ_T0022731.1 MGP_C57BL6NJ_G0016921.1 mouse_genomes_project 1 143917638 143920514 + Arl8a protein_coding retained_intron MGP_C57BL6NJ_T0000897.1 MGP_C57BL6NJ_G0000810.1 mouse_genomes_project 1 192822069 192825140 + TEC TEC MGP_C57BL6NJ_T0012527.1 MGP_C57BL6NJ_G0010572.1 mouse_genomes_project 1 131024148 131024382 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006072.1 MGP_C57BL6NJ_G0005089.1 mouse_genomes_project 1 145087785 145090972 - Gm37552 lincRNA lincRNA MGP_C57BL6NJ_T0100922.1 MGP_C57BL6NJ_G0038968.1 mouse_genomes_project 1 171933436 171933498 + Gm22489 snoRNA snoRNA MGP_C57BL6NJ_T0098939.1 MGP_C57BL6NJ_G0037003.1 mouse_genomes_project 1 164684042 164684162 - n-R5s220 rRNA rRNA MGP_C57BL6NJ_T0099634.1 MGP_C57BL6NJ_G0037680.1 mouse_genomes_project 1 148921072 148921176 + Gm26271 snRNA snRNA MGP_C57BL6NJ_T0000942.1 MGP_C57BL6NJ_G0000853.1 mouse_genomes_project 1 208778176 208780892 - TEC TEC MGP_C57BL6NJ_T0098932.1 MGP_C57BL6NJ_G0036996.1 mouse_genomes_project 1 111131460 111131572 - n-R5s216 rRNA rRNA MGP_C57BL6NJ_T0023263.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166782067 166894824 - MGP_C57BL6NJ_P0023263 Axdnd1 protein_coding protein_coding MGP_C57BL6NJ_T0023264.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166782067 166892988 - MGP_C57BL6NJ_P0023264 Axdnd1 protein_coding protein_coding MGP_C57BL6NJ_T0023265.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166789201 166894106 - MGP_C57BL6NJ_P0023265 Axdnd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0023266.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166817387 166833263 - Axdnd1 protein_coding processed_transcript MGP_C57BL6NJ_T0023267.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166822104 166866919 - Axdnd1 protein_coding processed_transcript MGP_C57BL6NJ_T0023268.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166822697 166865471 - MGP_C57BL6NJ_P0023268 Axdnd1 protein_coding protein_coding MGP_C57BL6NJ_T0023269.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166866971 166872059 - Axdnd1 protein_coding processed_transcript MGP_C57BL6NJ_T0023270.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166893038 166894564 - MGP_C57BL6NJ_P0023270 Axdnd1 protein_coding protein_coding MGP_C57BL6NJ_T0023271.1 MGP_C57BL6NJ_G0017026.1 mouse_genomes_project 1 166893038 166894600 - MGP_C57BL6NJ_P0023271 Axdnd1 protein_coding protein_coding MGP_C57BL6NJ_T0021820.1 MGP_C57BL6NJ_G0016715.1 mouse_genomes_project 1 97752720 97753802 + MGP_C57BL6NJ_P0021820 Olfr1413 protein_coding protein_coding MGP_C57BL6NJ_T0012464.1 MGP_C57BL6NJ_G0010509.1 mouse_genomes_project 1 110702638 110703114 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021478.1 MGP_C57BL6NJ_G0016637.1 mouse_genomes_project 1 90699588 90729919 + MGP_C57BL6NJ_P0021478 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021367.1 MGP_C57BL6NJ_G0016613.1 mouse_genomes_project 1 87270909 87271916 + MGP_C57BL6NJ_P0021367 Krtap28-13 protein_coding protein_coding MGP_C57BL6NJ_T0022752.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144172306 144222611 - MGP_C57BL6NJ_P0022752 Ipo9 protein_coding protein_coding MGP_C57BL6NJ_T0022753.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144174467 144222570 - MGP_C57BL6NJ_P0022753 Ipo9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022754.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144174467 144222603 - MGP_C57BL6NJ_P0022754 Ipo9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022755.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144175115 144178619 - MGP_C57BL6NJ_P0022755 Ipo9 protein_coding protein_coding MGP_C57BL6NJ_T0022756.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144175803 144178574 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022757.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144176282 144178725 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022758.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144176387 144177554 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022759.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144178640 144179818 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022760.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144179461 144195508 - Ipo9 protein_coding processed_transcript MGP_C57BL6NJ_T0022761.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144184209 144195599 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022762.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144194491 144222545 - MGP_C57BL6NJ_P0022762 Ipo9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022763.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144198160 144199284 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022764.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144198610 144212154 - Ipo9 protein_coding retained_intron MGP_C57BL6NJ_T0022765.1 MGP_C57BL6NJ_G0016928.1 mouse_genomes_project 1 144200175 144222531 - MGP_C57BL6NJ_P0022765 Ipo9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012617.1 MGP_C57BL6NJ_G0010662.1 mouse_genomes_project 1 176876577 176877367 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009741.1 MGP_C57BL6NJ_G0007826.1 mouse_genomes_project 1 180464443 180464559 - Mir6354 miRNA miRNA MGP_C57BL6NJ_T0000874.1 MGP_C57BL6NJ_G0000788.1 mouse_genomes_project 1 184695048 184695911 + TEC TEC MGP_C57BL6NJ_T0020576.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836024 62912712 + MGP_C57BL6NJ_P0020576 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020577.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836100 62908642 + MGP_C57BL6NJ_P0020577 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020578.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836100 62912712 + MGP_C57BL6NJ_P0020578 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020579.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836139 62911072 + MGP_C57BL6NJ_P0020579 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020580.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836186 62874059 + Abi2 protein_coding retained_intron MGP_C57BL6NJ_T0020581.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836200 62876585 + MGP_C57BL6NJ_P0020581 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020582.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836208 62908712 + MGP_C57BL6NJ_P0020582 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020583.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62836213 62862862 + Abi2 protein_coding retained_intron MGP_C57BL6NJ_T0020584.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62865441 62909312 + MGP_C57BL6NJ_P0020584 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020585.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62865565 62908474 + MGP_C57BL6NJ_P0020585 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020586.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62865570 62908637 + MGP_C57BL6NJ_P0020586 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0020587.1 MGP_C57BL6NJ_G0016468.1 mouse_genomes_project 1 62867300 62908858 + MGP_C57BL6NJ_P0020587 Abi2 protein_coding protein_coding MGP_C57BL6NJ_T0011504.1 MGP_C57BL6NJ_G0009589.1 mouse_genomes_project 1 61949557 61949642 + Gm24545 misc_RNA misc_RNA MGP_C57BL6NJ_T0012640.1 MGP_C57BL6NJ_G0010685.1 mouse_genomes_project 1 189022773 189023112 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000517.1 MGP_C57BL6NJ_G0000436.1 mouse_genomes_project 1 12019300 12022905 - TEC TEC MGP_C57BL6NJ_T0000538.1 MGP_C57BL6NJ_G0000455.1 mouse_genomes_project 1 24259300 24262733 - TEC TEC MGP_C57BL6NJ_T0099303.1 MGP_C57BL6NJ_G0037366.1 mouse_genomes_project 1 148036258 148037849 + 4930596I21Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0021644.1 MGP_C57BL6NJ_G0016670.1 mouse_genomes_project 1 92790593 92996654 + MGP_C57BL6NJ_P0021644 Ugt1a9 protein_coding protein_coding MGP_C57BL6NJ_T0000830.1 MGP_C57BL6NJ_G0000744.1 mouse_genomes_project 1 167950753 167951930 - TEC TEC MGP_C57BL6NJ_T0019932.1 MGP_C57BL6NJ_G0016347.1 mouse_genomes_project 1 39692582 39696071 + MGP_C57BL6NJ_P0019932 Rpl31 protein_coding protein_coding MGP_C57BL6NJ_T0019933.1 MGP_C57BL6NJ_G0016347.1 mouse_genomes_project 1 39692853 39696038 + MGP_C57BL6NJ_P0019933 Rpl31 protein_coding protein_coding MGP_C57BL6NJ_T0019934.1 MGP_C57BL6NJ_G0016347.1 mouse_genomes_project 1 39694554 39696071 + Rpl31 protein_coding retained_intron MGP_C57BL6NJ_T0009719.1 MGP_C57BL6NJ_G0007804.1 mouse_genomes_project 1 136374625 136374695 + Mir128-1 miRNA miRNA MGP_C57BL6NJ_T0099566.1 MGP_C57BL6NJ_G0037612.1 mouse_genomes_project 1 135860 135970 + Gm26206 snRNA snRNA MGP_C57BL6NJ_T0023407.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171874952 171879435 + Serpinc1 protein_coding retained_intron MGP_C57BL6NJ_T0023408.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171874973 171894902 + MGP_C57BL6NJ_P0023408 Serpinc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023409.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171875013 171903181 + MGP_C57BL6NJ_P0023409 Serpinc1 protein_coding protein_coding MGP_C57BL6NJ_T0023410.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171875019 171891146 + MGP_C57BL6NJ_P0023410 Serpinc1 protein_coding protein_coding MGP_C57BL6NJ_T0023411.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171875055 171887200 + MGP_C57BL6NJ_P0023411 Serpinc1 protein_coding protein_coding MGP_C57BL6NJ_T0023412.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171882309 171894931 + MGP_C57BL6NJ_P0023412 Serpinc1 protein_coding protein_coding MGP_C57BL6NJ_T0023413.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171884628 171887290 + Serpinc1 protein_coding retained_intron MGP_C57BL6NJ_T0023414.1 MGP_C57BL6NJ_G0017048.1 mouse_genomes_project 1 171886918 171899781 + MGP_C57BL6NJ_P0023414 Serpinc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022638.1 MGP_C57BL6NJ_G0016900.1 mouse_genomes_project 1 142699210 142715887 + MGP_C57BL6NJ_P0022638 Fmod protein_coding protein_coding MGP_C57BL6NJ_T0022639.1 MGP_C57BL6NJ_G0016900.1 mouse_genomes_project 1 142699452 142702431 + MGP_C57BL6NJ_P0022639 Fmod protein_coding protein_coding MGP_C57BL6NJ_T0022922.1 MGP_C57BL6NJ_G0016960.1 mouse_genomes_project 1 148805756 148913244 - MGP_C57BL6NJ_P0022922 Gm4788 protein_coding protein_coding MGP_C57BL6NJ_T0022923.1 MGP_C57BL6NJ_G0016960.1 mouse_genomes_project 1 148805756 148913169 - MGP_C57BL6NJ_P0022923 Gm4788 protein_coding protein_coding MGP_C57BL6NJ_T0022924.1 MGP_C57BL6NJ_G0016960.1 mouse_genomes_project 1 148805765 148913237 - MGP_C57BL6NJ_P0022924 Gm4788 protein_coding protein_coding MGP_C57BL6NJ_T0005878.1 MGP_C57BL6NJ_G0004934.1 mouse_genomes_project 1 48114512 48115463 - Gm28151 lincRNA lincRNA MGP_C57BL6NJ_T0000546.1 MGP_C57BL6NJ_G0000463.1 mouse_genomes_project 1 24697917 24704523 - TEC TEC MGP_C57BL6NJ_T0021817.1 MGP_C57BL6NJ_G0016714.1 mouse_genomes_project 1 97675507 97681488 - MGP_C57BL6NJ_P0021817 Olfr1415 protein_coding protein_coding MGP_C57BL6NJ_T0021818.1 MGP_C57BL6NJ_G0016714.1 mouse_genomes_project 1 97675507 97676443 - MGP_C57BL6NJ_P0021818 Olfr1415 protein_coding protein_coding MGP_C57BL6NJ_T0021819.1 MGP_C57BL6NJ_G0016714.1 mouse_genomes_project 1 97676063 97681465 - MGP_C57BL6NJ_P0021819 Olfr1415 protein_coding protein_coding MGP_C57BL6NJ_T0000715.1 MGP_C57BL6NJ_G0000631.1 mouse_genomes_project 1 112913511 112915596 - TEC TEC MGP_C57BL6NJ_T0019231.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 3763175 4201071 + MGP_C57BL6NJ_P0019231 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019232.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 3763275 4201077 + MGP_C57BL6NJ_P0019232 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019233.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4057243 4201077 + MGP_C57BL6NJ_P0019233 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019234.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4057245 4132275 + MGP_C57BL6NJ_P0019234 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019235.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4057262 4132400 + MGP_C57BL6NJ_P0019235 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019236.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4057293 4199607 + MGP_C57BL6NJ_P0019236 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019237.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4057294 4198950 + MGP_C57BL6NJ_P0019237 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019238.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4062063 4139520 + MGP_C57BL6NJ_P0019238 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019239.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4064768 4201077 + MGP_C57BL6NJ_P0019239 St18 protein_coding protein_coding MGP_C57BL6NJ_T0019240.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4139622 4147360 + MGP_C57BL6NJ_P0019240 St18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019241.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4154983 4173809 + St18 protein_coding processed_transcript MGP_C57BL6NJ_T0019242.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4167058 4189125 + St18 protein_coding processed_transcript MGP_C57BL6NJ_T0019243.1 MGP_C57BL6NJ_G0016210.1 mouse_genomes_project 1 4197477 4199741 + MGP_C57BL6NJ_P0019243 St18 protein_coding protein_coding MGP_C57BL6NJ_T0003124.1 MGP_C57BL6NJ_G0002919.1 mouse_genomes_project 1 199672097 199673434 + Gm29491 antisense antisense MGP_C57BL6NJ_T0021983.1 MGP_C57BL6NJ_G0016751.1 mouse_genomes_project 1 99437154 99442119 + MGP_C57BL6NJ_P0021983 Neu4 protein_coding protein_coding MGP_C57BL6NJ_T0021984.1 MGP_C57BL6NJ_G0016751.1 mouse_genomes_project 1 99437196 99445037 + MGP_C57BL6NJ_P0021984 Neu4 protein_coding protein_coding MGP_C57BL6NJ_T0012609.1 MGP_C57BL6NJ_G0010654.1 mouse_genomes_project 1 173287634 173288064 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012432.1 MGP_C57BL6NJ_G0010477.1 mouse_genomes_project 1 94011149 94011392 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012436.1 MGP_C57BL6NJ_G0010481.1 mouse_genomes_project 1 96576328 96576521 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098934.1 MGP_C57BL6NJ_G0036998.1 mouse_genomes_project 1 143914122 143914223 - Gm26280 rRNA rRNA MGP_C57BL6NJ_T0022406.1 MGP_C57BL6NJ_G0016850.1 mouse_genomes_project 1 139336279 139343763 - MGP_C57BL6NJ_P0022406 Il19 protein_coding protein_coding MGP_C57BL6NJ_T0022407.1 MGP_C57BL6NJ_G0016850.1 mouse_genomes_project 1 139336281 139342901 - MGP_C57BL6NJ_P0022407 Il19 protein_coding protein_coding MGP_C57BL6NJ_T0022408.1 MGP_C57BL6NJ_G0016850.1 mouse_genomes_project 1 139336439 139343777 - MGP_C57BL6NJ_P0022408 Il19 protein_coding protein_coding MGP_C57BL6NJ_T0022409.1 MGP_C57BL6NJ_G0016850.1 mouse_genomes_project 1 139336481 139343735 - MGP_C57BL6NJ_P0022409 Il19 protein_coding protein_coding MGP_C57BL6NJ_T0000794.1 MGP_C57BL6NJ_G0000708.1 mouse_genomes_project 1 148231981 148236648 + TEC TEC MGP_C57BL6NJ_T0000601.1 MGP_C57BL6NJ_G0000517.1 mouse_genomes_project 1 56069328 56072989 - TEC TEC MGP_C57BL6NJ_T0020226.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54654880 54690527 - MGP_C57BL6NJ_P0020226 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0020227.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54654880 54680615 - MGP_C57BL6NJ_P0020227 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0020228.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54654880 54680109 - MGP_C57BL6NJ_P0020228 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0020229.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54657725 54741012 - MGP_C57BL6NJ_P0020229 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0020230.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54657730 54699313 - MGP_C57BL6NJ_P0020230 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0020231.1 MGP_C57BL6NJ_G0016403.1 mouse_genomes_project 1 54657740 54717470 - MGP_C57BL6NJ_P0020231 1700019D03Rik protein_coding protein_coding MGP_C57BL6NJ_T0023696.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529809 177592939 + MGP_C57BL6NJ_P0023696 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023697.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023697 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023698.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023698 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023699.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023699 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023700.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023700 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023701.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023701 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0023702.1 MGP_C57BL6NJ_G0017106.1 mouse_genomes_project 1 177529863 177587384 + MGP_C57BL6NJ_P0023702 Ildr2 protein_coding protein_coding MGP_C57BL6NJ_T0012449.1 MGP_C57BL6NJ_G0010494.1 mouse_genomes_project 1 104532635 104533349 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012206.1 MGP_C57BL6NJ_G0010251.1 mouse_genomes_project 1 20908407 20908854 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102698.1 MGP_C57BL6NJ_G0040493.1 mouse_genomes_project 1 186192390 186192844 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005848.1 MGP_C57BL6NJ_G0004919.1 mouse_genomes_project 1 38388983 38417745 + Gm5099 lincRNA lincRNA MGP_C57BL6NJ_T0006001.1 MGP_C57BL6NJ_G0005031.1 mouse_genomes_project 1 97775019 97778391 + Gm28479 lincRNA lincRNA MGP_C57BL6NJ_T0024143.1 MGP_C57BL6NJ_G0017225.1 mouse_genomes_project 1 186226401 186227349 + MGP_C57BL6NJ_P0024143 Olfr424 protein_coding protein_coding MGP_C57BL6NJ_T0020058.1 MGP_C57BL6NJ_G0016376.1 mouse_genomes_project 1 44830784 44836769 - MGP_C57BL6NJ_P0020058 Gm8251 protein_coding protein_coding MGP_C57BL6NJ_T0012259.1 MGP_C57BL6NJ_G0010304.1 mouse_genomes_project 1 37697123 37698913 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100908.1 MGP_C57BL6NJ_G0038954.1 mouse_genomes_project 1 142225527 142225660 + Gm23939 snoRNA snoRNA MGP_C57BL6NJ_T0006128.1 MGP_C57BL6NJ_G0005131.1 mouse_genomes_project 1 174667661 174670554 + Gm29500 lincRNA lincRNA MGP_C57BL6NJ_T0021046.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78647344 78655431 - MGP_C57BL6NJ_P0021046 Cnppd1 protein_coding protein_coding MGP_C57BL6NJ_T0021047.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78648558 78654482 - MGP_C57BL6NJ_P0021047 Cnppd1 protein_coding protein_coding MGP_C57BL6NJ_T0021048.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78648561 78651667 - Cnppd1 protein_coding retained_intron MGP_C57BL6NJ_T0021049.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78648561 78655490 - MGP_C57BL6NJ_P0021049 Cnppd1 protein_coding protein_coding MGP_C57BL6NJ_T0021050.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78649575 78650652 - Cnppd1 protein_coding retained_intron MGP_C57BL6NJ_T0021051.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78649882 78650597 - Cnppd1 protein_coding retained_intron MGP_C57BL6NJ_T0021052.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78652137 78654594 - MGP_C57BL6NJ_P0021052 Cnppd1 protein_coding protein_coding MGP_C57BL6NJ_T0021053.1 MGP_C57BL6NJ_G0016562.1 mouse_genomes_project 1 78652387 78655504 - MGP_C57BL6NJ_P0021053 Cnppd1 protein_coding protein_coding MGP_C57BL6NJ_T0100936.1 MGP_C57BL6NJ_G0038982.1 mouse_genomes_project 1 184758725 184758848 - Gm26077 snoRNA snoRNA MGP_C57BL6NJ_T0021656.1 MGP_C57BL6NJ_G0016678.1 mouse_genomes_project 1 92988096 92996654 + MGP_C57BL6NJ_P0021656 protein_coding protein_coding MGP_C57BL6NJ_T0009659.1 MGP_C57BL6NJ_G0007744.1 mouse_genomes_project 1 22011353 22011424 + Mir30a miRNA miRNA MGP_C57BL6NJ_T0012220.1 MGP_C57BL6NJ_G0010265.1 mouse_genomes_project 1 27219906 27221779 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009704.1 MGP_C57BL6NJ_G0007789.1 mouse_genomes_project 1 91266262 91266319 - Gm22955 miRNA miRNA MGP_C57BL6NJ_T0012250.1 MGP_C57BL6NJ_G0010295.1 mouse_genomes_project 1 34565501 34566147 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012244.1 MGP_C57BL6NJ_G0010289.1 mouse_genomes_project 1 34235709 34237342 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005855.1 MGP_C57BL6NJ_G0004924.1 mouse_genomes_project 1 42360129 42543749 + Gm29260 lincRNA lincRNA MGP_C57BL6NJ_T0005856.1 MGP_C57BL6NJ_G0004924.1 mouse_genomes_project 1 42516670 42518404 + Gm29260 lincRNA lincRNA MGP_C57BL6NJ_T0022903.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148277491 148469237 - MGP_C57BL6NJ_P0022903 protein_coding protein_coding MGP_C57BL6NJ_T0022904.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148278675 148282690 - protein_coding retained_intron MGP_C57BL6NJ_T0022905.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148311526 148469260 - MGP_C57BL6NJ_P0022905 protein_coding protein_coding MGP_C57BL6NJ_T0022906.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148327594 148337274 - protein_coding retained_intron MGP_C57BL6NJ_T0022907.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148329641 148469201 - MGP_C57BL6NJ_P0022907 protein_coding protein_coding MGP_C57BL6NJ_T0022908.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148330703 148411745 - MGP_C57BL6NJ_P0022908 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022909.1 MGP_C57BL6NJ_G0016955.1 mouse_genomes_project 1 148330718 148411765 - MGP_C57BL6NJ_P0022909 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009737.1 MGP_C57BL6NJ_G0007822.1 mouse_genomes_project 1 176939139 176939282 + Gm44458 miRNA miRNA MGP_C57BL6NJ_T0012495.1 MGP_C57BL6NJ_G0010540.1 mouse_genomes_project 1 119685972 119688116 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012565.1 MGP_C57BL6NJ_G0010610.1 mouse_genomes_project 1 154363181 154364325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003130.1 MGP_C57BL6NJ_G0002925.1 mouse_genomes_project 1 202525093 202526560 + A430027H14Rik antisense antisense MGP_C57BL6NJ_T0003131.1 MGP_C57BL6NJ_G0002925.1 mouse_genomes_project 1 202525646 202526536 + A430027H14Rik antisense antisense MGP_C57BL6NJ_T0100928.1 MGP_C57BL6NJ_G0038974.1 mouse_genomes_project 1 171935190 171935267 + Snord80 snoRNA snoRNA MGP_C57BL6NJ_T0099296.1 MGP_C57BL6NJ_G0037359.1 mouse_genomes_project 1 86887268 86888285 + Gm28941 sense_intronic sense_intronic MGP_C57BL6NJ_T0002932.1 MGP_C57BL6NJ_G0002773.1 mouse_genomes_project 1 38565831 38569860 + Gm16151 antisense antisense MGP_C57BL6NJ_T0102704.1 MGP_C57BL6NJ_G0040499.1 mouse_genomes_project 1 190246754 190261185 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000739.1 MGP_C57BL6NJ_G0000655.1 mouse_genomes_project 1 134337016 134338056 - TEC TEC MGP_C57BL6NJ_T0012486.1 MGP_C57BL6NJ_G0010531.1 mouse_genomes_project 1 117088146 117089074 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012648.1 MGP_C57BL6NJ_G0010693.1 mouse_genomes_project 1 193636314 193636961 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099301.1 MGP_C57BL6NJ_G0037364.1 mouse_genomes_project 1 144201733 144206298 - Gm28277 sense_intronic sense_intronic MGP_C57BL6NJ_T0021293.1 MGP_C57BL6NJ_G0016598.1 mouse_genomes_project 1 83684948 83690376 + MGP_C57BL6NJ_P0021293 Mrpl44 protein_coding protein_coding MGP_C57BL6NJ_T0021294.1 MGP_C57BL6NJ_G0016598.1 mouse_genomes_project 1 83685046 83687477 + Mrpl44 protein_coding retained_intron MGP_C57BL6NJ_T0012399.1 MGP_C57BL6NJ_G0010444.1 mouse_genomes_project 1 84920468 84920920 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009688.1 MGP_C57BL6NJ_G0007773.1 mouse_genomes_project 1 70522688 70522766 + Gm22548 miRNA miRNA MGP_C57BL6NJ_T0023043.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161490424 161555565 - MGP_C57BL6NJ_P0023043 Swt1 protein_coding protein_coding MGP_C57BL6NJ_T0023044.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161491089 161555546 - MGP_C57BL6NJ_P0023044 Swt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023045.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161493109 161495090 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0023046.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161502257 161507307 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0023047.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161514212 161528698 - MGP_C57BL6NJ_P0023047 Swt1 protein_coding protein_coding MGP_C57BL6NJ_T0023048.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161524889 161549586 - MGP_C57BL6NJ_P0023048 Swt1 protein_coding protein_coding MGP_C57BL6NJ_T0023049.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161525524 161530278 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0023050.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161536830 161538652 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0023051.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161541991 161549375 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0023052.1 MGP_C57BL6NJ_G0016983.1 mouse_genomes_project 1 161554133 161555565 - Swt1 protein_coding retained_intron MGP_C57BL6NJ_T0003070.1 MGP_C57BL6NJ_G0002878.1 mouse_genomes_project 1 171078255 171256416 + Gm36975 antisense antisense MGP_C57BL6NJ_T0000513.1 MGP_C57BL6NJ_G0000432.1 mouse_genomes_project 1 11224694 11230814 - TEC TEC MGP_C57BL6NJ_T0000632.1 MGP_C57BL6NJ_G0000548.1 mouse_genomes_project 1 69621568 69626165 + TEC TEC MGP_C57BL6NJ_T0000520.1 MGP_C57BL6NJ_G0000439.1 mouse_genomes_project 1 13389752 13391285 + TEC TEC MGP_C57BL6NJ_T0019209.1 MGP_C57BL6NJ_G0016206.1 mouse_genomes_project 1 2778880 2781722 + Oprk1 protein_coding retained_intron MGP_C57BL6NJ_T0019210.1 MGP_C57BL6NJ_G0016206.1 mouse_genomes_project 1 2778907 2796534 + MGP_C57BL6NJ_P0019210 Oprk1 protein_coding protein_coding MGP_C57BL6NJ_T0019211.1 MGP_C57BL6NJ_G0016206.1 mouse_genomes_project 1 2778971 2793269 + MGP_C57BL6NJ_P0019211 Oprk1 protein_coding protein_coding MGP_C57BL6NJ_T0019212.1 MGP_C57BL6NJ_G0016206.1 mouse_genomes_project 1 2779355 2794417 + MGP_C57BL6NJ_P0019212 Oprk1 protein_coding protein_coding MGP_C57BL6NJ_T0019213.1 MGP_C57BL6NJ_G0016206.1 mouse_genomes_project 1 2786920 2793556 + Oprk1 protein_coding retained_intron MGP_C57BL6NJ_T0021720.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96083683 96200747 + MGP_C57BL6NJ_P0021720 Lrrfip1 protein_coding protein_coding MGP_C57BL6NJ_T0021721.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96083723 96217569 + MGP_C57BL6NJ_P0021721 Lrrfip1 protein_coding protein_coding MGP_C57BL6NJ_T0021722.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96140775 96212345 + MGP_C57BL6NJ_P0021722 Lrrfip1 protein_coding protein_coding MGP_C57BL6NJ_T0021723.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96140828 96192703 + MGP_C57BL6NJ_P0021723 Lrrfip1 protein_coding protein_coding MGP_C57BL6NJ_T0021724.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96140907 96220775 + MGP_C57BL6NJ_P0021724 Lrrfip1 protein_coding protein_coding MGP_C57BL6NJ_T0021725.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96140979 96211094 + MGP_C57BL6NJ_P0021725 Lrrfip1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021726.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96203301 96211951 + Lrrfip1 protein_coding processed_transcript MGP_C57BL6NJ_T0021727.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96203320 96209882 + Lrrfip1 protein_coding processed_transcript MGP_C57BL6NJ_T0021728.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96214989 96217555 + Lrrfip1 protein_coding processed_transcript MGP_C57BL6NJ_T0021729.1 MGP_C57BL6NJ_G0016696.1 mouse_genomes_project 1 96220385 96220775 + Lrrfip1 protein_coding retained_intron MGP_C57BL6NJ_T0012203.1 MGP_C57BL6NJ_G0010248.1 mouse_genomes_project 1 19982816 19983012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022835.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145048768 145069487 - MGP_C57BL6NJ_P0022835 5730559C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022836.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145055511 145065523 - MGP_C57BL6NJ_P0022836 5730559C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022837.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145055549 145065544 - MGP_C57BL6NJ_P0022837 5730559C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022838.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145058796 145062896 - 5730559C18Rik protein_coding retained_intron MGP_C57BL6NJ_T0022839.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145061426 145069342 - MGP_C57BL6NJ_P0022839 5730559C18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022840.1 MGP_C57BL6NJ_G0016942.1 mouse_genomes_project 1 145061447 145065253 - MGP_C57BL6NJ_P0022840 5730559C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022812.1 MGP_C57BL6NJ_G0016937.1 mouse_genomes_project 1 144830073 144858665 + MGP_C57BL6NJ_P0022812 Tmem9 protein_coding protein_coding MGP_C57BL6NJ_T0022813.1 MGP_C57BL6NJ_G0016937.1 mouse_genomes_project 1 144839854 144859740 + MGP_C57BL6NJ_P0022813 Tmem9 protein_coding protein_coding MGP_C57BL6NJ_T0022814.1 MGP_C57BL6NJ_G0016937.1 mouse_genomes_project 1 144839949 144858690 + MGP_C57BL6NJ_P0022814 Tmem9 protein_coding protein_coding MGP_C57BL6NJ_T0022815.1 MGP_C57BL6NJ_G0016937.1 mouse_genomes_project 1 144851405 144858797 + Tmem9 protein_coding retained_intron MGP_C57BL6NJ_T0022816.1 MGP_C57BL6NJ_G0016937.1 mouse_genomes_project 1 144857673 144859178 + Tmem9 protein_coding processed_transcript MGP_C57BL6NJ_T0023099.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163024312 163061974 + MGP_C57BL6NJ_P0023099 Ncf2 protein_coding protein_coding MGP_C57BL6NJ_T0023100.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163032971 163049356 + MGP_C57BL6NJ_P0023100 Ncf2 protein_coding protein_coding MGP_C57BL6NJ_T0023101.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163033024 163061973 + MGP_C57BL6NJ_P0023101 Ncf2 protein_coding protein_coding MGP_C57BL6NJ_T0023102.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163033112 163037779 + Ncf2 protein_coding retained_intron MGP_C57BL6NJ_T0023103.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163036030 163049355 + Ncf2 protein_coding retained_intron MGP_C57BL6NJ_T0023104.1 MGP_C57BL6NJ_G0016994.1 mouse_genomes_project 1 163048632 163049548 + Ncf2 protein_coding retained_intron MGP_C57BL6NJ_T0100870.1 MGP_C57BL6NJ_G0038916.1 mouse_genomes_project 1 60361852 60361960 - Gm24548 snoRNA snoRNA MGP_C57BL6NJ_T0020281.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56587383 56590657 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020282.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56587383 56880675 - MGP_C57BL6NJ_P0020282 Ankrd44 protein_coding protein_coding MGP_C57BL6NJ_T0020283.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56587385 56880675 - MGP_C57BL6NJ_P0020283 Ankrd44 protein_coding protein_coding MGP_C57BL6NJ_T0020284.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56591140 56599549 - MGP_C57BL6NJ_P0020284 Ankrd44 protein_coding protein_coding MGP_C57BL6NJ_T0020285.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56593712 56712339 - MGP_C57BL6NJ_P0020285 Ankrd44 protein_coding protein_coding MGP_C57BL6NJ_T0020286.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56596934 56639942 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020287.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56609056 56671871 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020288.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56671362 56673218 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020289.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56677332 56683976 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020290.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56683633 56880642 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020291.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56691630 56715034 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020292.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56709188 56717396 - Ankrd44 protein_coding processed_transcript MGP_C57BL6NJ_T0020293.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56709506 56880675 - Ankrd44 protein_coding retained_intron MGP_C57BL6NJ_T0020294.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56710987 56767879 - Ankrd44 protein_coding processed_transcript MGP_C57BL6NJ_T0020295.1 MGP_C57BL6NJ_G0016418.1 mouse_genomes_project 1 56715402 56841559 - MGP_C57BL6NJ_P0020295 Ankrd44 protein_coding protein_coding MGP_C57BL6NJ_T0012641.1 MGP_C57BL6NJ_G0010686.1 mouse_genomes_project 1 189071901 189072736 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003065.1 MGP_C57BL6NJ_G0002873.1 mouse_genomes_project 1 166760883 166762361 + 4930518J20Rik antisense antisense MGP_C57BL6NJ_T0000663.1 MGP_C57BL6NJ_G0000579.1 mouse_genomes_project 1 84732876 84734732 - TEC TEC MGP_C57BL6NJ_T0012614.1 MGP_C57BL6NJ_G0010659.1 mouse_genomes_project 1 175620914 175621230 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012656.1 MGP_C57BL6NJ_G0010701.1 mouse_genomes_project 1 196119282 196119674 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011498.1 MGP_C57BL6NJ_G0009583.1 mouse_genomes_project 1 28674597 28674709 - Gm25586 misc_RNA misc_RNA MGP_C57BL6NJ_T0011497.1 MGP_C57BL6NJ_G0009582.1 mouse_genomes_project 1 13927939 13928242 + Gm23259 misc_RNA misc_RNA MGP_C57BL6NJ_T0012665.1 MGP_C57BL6NJ_G0010710.1 mouse_genomes_project 1 204325576 204325781 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009682.1 MGP_C57BL6NJ_G0007767.1 mouse_genomes_project 1 65580209 65580314 + Gm44468 miRNA miRNA MGP_C57BL6NJ_T0102655.1 MGP_C57BL6NJ_G0040450.1 mouse_genomes_project 1 92868463 92869297 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024116.1 MGP_C57BL6NJ_G0017213.1 mouse_genomes_project 1 185706566 185724540 - MGP_C57BL6NJ_P0024116 AI607873 protein_coding protein_coding MGP_C57BL6NJ_T0024117.1 MGP_C57BL6NJ_G0017213.1 mouse_genomes_project 1 185706819 185724478 - MGP_C57BL6NJ_P0024117 AI607873 protein_coding protein_coding MGP_C57BL6NJ_T0019880.1 MGP_C57BL6NJ_G0016337.1 mouse_genomes_project 1 38186321 38188585 - Lyg1 protein_coding processed_transcript MGP_C57BL6NJ_T0019881.1 MGP_C57BL6NJ_G0016337.1 mouse_genomes_project 1 38186321 38197337 - MGP_C57BL6NJ_P0019881 Lyg1 protein_coding protein_coding MGP_C57BL6NJ_T0019882.1 MGP_C57BL6NJ_G0016337.1 mouse_genomes_project 1 38186323 38197337 - MGP_C57BL6NJ_P0019882 Lyg1 protein_coding protein_coding MGP_C57BL6NJ_T0023123.1 MGP_C57BL6NJ_G0016998.1 mouse_genomes_project 1 163481384 163600562 - MGP_C57BL6NJ_P0023123 Lamc1 protein_coding protein_coding MGP_C57BL6NJ_T0023124.1 MGP_C57BL6NJ_G0016998.1 mouse_genomes_project 1 163481384 163491565 - MGP_C57BL6NJ_P0023124 Lamc1 protein_coding protein_coding MGP_C57BL6NJ_T0023125.1 MGP_C57BL6NJ_G0016998.1 mouse_genomes_project 1 163491181 163491839 - Lamc1 protein_coding retained_intron MGP_C57BL6NJ_T0023126.1 MGP_C57BL6NJ_G0016998.1 mouse_genomes_project 1 163491235 163501706 - MGP_C57BL6NJ_P0023126 Lamc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023127.1 MGP_C57BL6NJ_G0016998.1 mouse_genomes_project 1 163510994 163512839 - Lamc1 protein_coding retained_intron MGP_C57BL6NJ_T0012649.1 MGP_C57BL6NJ_G0010694.1 mouse_genomes_project 1 193676594 193677731 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000785.1 MGP_C57BL6NJ_G0000699.1 mouse_genomes_project 1 146972030 146973238 + TEC TEC MGP_C57BL6NJ_T0006214.1 MGP_C57BL6NJ_G0005198.1 mouse_genomes_project 1 204471177 204472535 + Gm38161 lincRNA lincRNA MGP_C57BL6NJ_T0102706.1 MGP_C57BL6NJ_G0040501.1 mouse_genomes_project 1 193602148 193602259 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022391.1 MGP_C57BL6NJ_G0016845.1 mouse_genomes_project 1 139201232 139215057 + MGP_C57BL6NJ_P0022391 Fcamr protein_coding protein_coding MGP_C57BL6NJ_T0022392.1 MGP_C57BL6NJ_G0016845.1 mouse_genomes_project 1 139201232 139215025 + MGP_C57BL6NJ_P0022392 Fcamr protein_coding protein_coding MGP_C57BL6NJ_T0012383.1 MGP_C57BL6NJ_G0010428.1 mouse_genomes_project 1 75788791 75791045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021734.1 MGP_C57BL6NJ_G0016698.1 mouse_genomes_project 1 96276686 96303644 + MGP_C57BL6NJ_P0021734 Ramp1 protein_coding protein_coding MGP_C57BL6NJ_T0021735.1 MGP_C57BL6NJ_G0016698.1 mouse_genomes_project 1 96276906 96303644 + MGP_C57BL6NJ_P0021735 Ramp1 protein_coding protein_coding MGP_C57BL6NJ_T0021736.1 MGP_C57BL6NJ_G0016698.1 mouse_genomes_project 1 96276910 96321704 + MGP_C57BL6NJ_P0021736 Ramp1 protein_coding protein_coding MGP_C57BL6NJ_T0021333.1 MGP_C57BL6NJ_G0016608.1 mouse_genomes_project 1 86718766 86777588 + Col4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021334.1 MGP_C57BL6NJ_G0016608.1 mouse_genomes_project 1 86718821 86869638 + MGP_C57BL6NJ_P0021334 Col4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021335.1 MGP_C57BL6NJ_G0016608.1 mouse_genomes_project 1 86861636 86865364 + MGP_C57BL6NJ_P0021335 Col4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021336.1 MGP_C57BL6NJ_G0016608.1 mouse_genomes_project 1 86861636 86865217 + MGP_C57BL6NJ_P0021336 Col4a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000843.1 MGP_C57BL6NJ_G0000757.1 mouse_genomes_project 1 171442552 171444628 - TEC TEC MGP_C57BL6NJ_T0023988.1 MGP_C57BL6NJ_G0017177.1 mouse_genomes_project 1 183804165 183810821 - MGP_C57BL6NJ_P0023988 Nhlh1 protein_coding protein_coding MGP_C57BL6NJ_T0022910.1 MGP_C57BL6NJ_G0016956.1 mouse_genomes_project 1 148518675 148538245 + MGP_C57BL6NJ_P0022910 Zbtb41 protein_coding protein_coding MGP_C57BL6NJ_T0022911.1 MGP_C57BL6NJ_G0016956.1 mouse_genomes_project 1 148518696 148543918 + MGP_C57BL6NJ_P0022911 Zbtb41 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022912.1 MGP_C57BL6NJ_G0016956.1 mouse_genomes_project 1 148520041 148545571 + MGP_C57BL6NJ_P0022912 Zbtb41 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009731.1 MGP_C57BL6NJ_G0007816.1 mouse_genomes_project 1 169192274 169192383 + Mir488 miRNA miRNA MGP_C57BL6NJ_T0021442.1 MGP_C57BL6NJ_G0016629.1 mouse_genomes_project 1 90308193 90368683 + MGP_C57BL6NJ_P0021442 Cab39 protein_coding protein_coding MGP_C57BL6NJ_T0021443.1 MGP_C57BL6NJ_G0016629.1 mouse_genomes_project 1 90308293 90332988 + MGP_C57BL6NJ_P0021443 Cab39 protein_coding protein_coding MGP_C57BL6NJ_T0021444.1 MGP_C57BL6NJ_G0016629.1 mouse_genomes_project 1 90309220 90354420 + MGP_C57BL6NJ_P0021444 Cab39 protein_coding protein_coding MGP_C57BL6NJ_T0021445.1 MGP_C57BL6NJ_G0016629.1 mouse_genomes_project 1 90309263 90367472 + MGP_C57BL6NJ_P0021445 Cab39 protein_coding protein_coding MGP_C57BL6NJ_T0021446.1 MGP_C57BL6NJ_G0016629.1 mouse_genomes_project 1 90360181 90363172 + Cab39 protein_coding retained_intron MGP_C57BL6NJ_T0012452.1 MGP_C57BL6NJ_G0010497.1 mouse_genomes_project 1 105851924 105852488 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019395.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12081899 12236748 - MGP_C57BL6NJ_P0019395 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019396.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12081903 12236783 - MGP_C57BL6NJ_P0019396 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019397.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12082611 12236667 - MGP_C57BL6NJ_P0019397 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019398.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12083588 12231118 - MGP_C57BL6NJ_P0019398 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019399.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12121761 12147827 - MGP_C57BL6NJ_P0019399 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019400.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12174043 12231167 - MGP_C57BL6NJ_P0019400 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019401.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12194148 12231176 - MGP_C57BL6NJ_P0019401 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019402.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12194216 12236384 - MGP_C57BL6NJ_P0019402 Eya1 protein_coding protein_coding MGP_C57BL6NJ_T0019403.1 MGP_C57BL6NJ_G0016237.1 mouse_genomes_project 1 12227751 12236599 - Eya1 protein_coding retained_intron MGP_C57BL6NJ_T0002918.1 MGP_C57BL6NJ_G0002762.1 mouse_genomes_project 1 34318074 34325261 - Gm28306 antisense antisense MGP_C57BL6NJ_T0024396.1 MGP_C57BL6NJ_G0017283.1 mouse_genomes_project 1 193741533 193760773 + MGP_C57BL6NJ_P0024396 Cnih4 protein_coding protein_coding MGP_C57BL6NJ_T0024397.1 MGP_C57BL6NJ_G0017283.1 mouse_genomes_project 1 193741539 193760773 + MGP_C57BL6NJ_P0024397 Cnih4 protein_coding protein_coding MGP_C57BL6NJ_T0024398.1 MGP_C57BL6NJ_G0017283.1 mouse_genomes_project 1 193745340 193758160 + Cnih4 protein_coding processed_transcript MGP_C57BL6NJ_T0024399.1 MGP_C57BL6NJ_G0017283.1 mouse_genomes_project 1 193746322 193758128 + Cnih4 protein_coding retained_intron MGP_C57BL6NJ_T0021503.1 MGP_C57BL6NJ_G0016643.1 mouse_genomes_project 1 91144174 91146940 + MGP_C57BL6NJ_P0021503 protein_coding protein_coding MGP_C57BL6NJ_T0021504.1 MGP_C57BL6NJ_G0016643.1 mouse_genomes_project 1 91144178 91147158 + protein_coding processed_transcript MGP_C57BL6NJ_T0021505.1 MGP_C57BL6NJ_G0016643.1 mouse_genomes_project 1 91144244 91147470 + MGP_C57BL6NJ_P0021505 protein_coding protein_coding MGP_C57BL6NJ_T0021506.1 MGP_C57BL6NJ_G0016643.1 mouse_genomes_project 1 91144319 91148462 + MGP_C57BL6NJ_P0021506 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006146.1 MGP_C57BL6NJ_G0005146.1 mouse_genomes_project 1 178294908 178314327 - Gm16701 lincRNA lincRNA MGP_C57BL6NJ_T0009730.1 MGP_C57BL6NJ_G0007815.1 mouse_genomes_project 1 164242435 164242546 + Mir8114 miRNA miRNA MGP_C57BL6NJ_T0012529.1 MGP_C57BL6NJ_G0010574.1 mouse_genomes_project 1 131602443 131603325 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002900.1 MGP_C57BL6NJ_G0002749.1 mouse_genomes_project 1 11258674 11274920 + Gm29570 antisense antisense MGP_C57BL6NJ_T0102630.1 MGP_C57BL6NJ_G0040425.1 mouse_genomes_project 1 16248667 16255854 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006029.1 MGP_C57BL6NJ_G0005053.1 mouse_genomes_project 1 120121940 120124007 + lincRNA lincRNA MGP_C57BL6NJ_T0022272.1 MGP_C57BL6NJ_G0016821.1 mouse_genomes_project 1 133852129 133896681 - MGP_C57BL6NJ_P0022272 Lypd1 protein_coding protein_coding MGP_C57BL6NJ_T0022273.1 MGP_C57BL6NJ_G0016821.1 mouse_genomes_project 1 133856794 133895854 - MGP_C57BL6NJ_P0022273 Lypd1 protein_coding protein_coding MGP_C57BL6NJ_T0022274.1 MGP_C57BL6NJ_G0016821.1 mouse_genomes_project 1 133856828 133897395 - MGP_C57BL6NJ_P0022274 Lypd1 protein_coding protein_coding MGP_C57BL6NJ_T0022275.1 MGP_C57BL6NJ_G0016821.1 mouse_genomes_project 1 133857611 133895371 - MGP_C57BL6NJ_P0022275 Lypd1 protein_coding protein_coding MGP_C57BL6NJ_T0022276.1 MGP_C57BL6NJ_G0016821.1 mouse_genomes_project 1 133858029 133897568 - MGP_C57BL6NJ_P0022276 Lypd1 protein_coding protein_coding MGP_C57BL6NJ_T0012378.1 MGP_C57BL6NJ_G0010423.1 mouse_genomes_project 1 74313478 74314253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019837.1 MGP_C57BL6NJ_G0016328.1 mouse_genomes_project 1 37619852 37632825 - MGP_C57BL6NJ_P0019837 Coa5 protein_coding protein_coding MGP_C57BL6NJ_T0019838.1 MGP_C57BL6NJ_G0016328.1 mouse_genomes_project 1 37631233 37632722 - Coa5 protein_coding retained_intron MGP_C57BL6NJ_T0021884.1 MGP_C57BL6NJ_G0016732.1 mouse_genomes_project 1 98382788 98454309 + MGP_C57BL6NJ_P0021884 Crocc2 protein_coding protein_coding MGP_C57BL6NJ_T0021885.1 MGP_C57BL6NJ_G0016732.1 mouse_genomes_project 1 98382873 98452255 + MGP_C57BL6NJ_P0021885 Crocc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0012386.1 MGP_C57BL6NJ_G0010431.1 mouse_genomes_project 1 79083749 79084097 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009655.1 MGP_C57BL6NJ_G0007740.1 mouse_genomes_project 1 10202772 10202893 + Mir6341 miRNA miRNA MGP_C57BL6NJ_T0000904.1 MGP_C57BL6NJ_G0000817.1 mouse_genomes_project 1 194692313 194695818 - TEC TEC MGP_C57BL6NJ_T0012439.1 MGP_C57BL6NJ_G0010484.1 mouse_genomes_project 1 98199089 98202465 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100913.1 MGP_C57BL6NJ_G0038959.1 mouse_genomes_project 1 153127592 153127727 + Gm25663 snoRNA snoRNA MGP_C57BL6NJ_T0000495.1 MGP_C57BL6NJ_G0000414.1 mouse_genomes_project 1 5922564 5925096 - TEC TEC MGP_C57BL6NJ_T0000543.1 MGP_C57BL6NJ_G0000460.1 mouse_genomes_project 1 24581601 24584544 - TEC TEC MGP_C57BL6NJ_T0003041.1 MGP_C57BL6NJ_G0002853.1 mouse_genomes_project 1 143575251 143587525 + Gm28892 antisense antisense MGP_C57BL6NJ_T0099656.1 MGP_C57BL6NJ_G0037702.1 mouse_genomes_project 1 190695181 190695287 + Gm24919 snRNA snRNA MGP_C57BL6NJ_T0022346.1 MGP_C57BL6NJ_G0016833.1 mouse_genomes_project 1 136520208 136550619 - MGP_C57BL6NJ_P0022346 Mcm6 protein_coding protein_coding MGP_C57BL6NJ_T0022347.1 MGP_C57BL6NJ_G0016833.1 mouse_genomes_project 1 136520211 136550602 - MGP_C57BL6NJ_P0022347 Mcm6 protein_coding protein_coding MGP_C57BL6NJ_T0022348.1 MGP_C57BL6NJ_G0016833.1 mouse_genomes_project 1 136529247 136535618 - Mcm6 protein_coding retained_intron MGP_C57BL6NJ_T0022349.1 MGP_C57BL6NJ_G0016833.1 mouse_genomes_project 1 136530802 136533039 - Mcm6 protein_coding retained_intron MGP_C57BL6NJ_T0012599.1 MGP_C57BL6NJ_G0010644.1 mouse_genomes_project 1 168214603 168215208 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024297.1 MGP_C57BL6NJ_G0017264.1 mouse_genomes_project 1 192219173 192220474 + MGP_C57BL6NJ_P0024297 Gm10518 protein_coding protein_coding MGP_C57BL6NJ_T0024718.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205437395 205438809 - Traf5 protein_coding retained_intron MGP_C57BL6NJ_T0024719.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205437395 205440161 - MGP_C57BL6NJ_P0024719 Traf5 protein_coding protein_coding MGP_C57BL6NJ_T0024720.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205437620 205466255 - MGP_C57BL6NJ_P0024720 Traf5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024721.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205437620 205490906 - MGP_C57BL6NJ_P0024721 Traf5 protein_coding protein_coding MGP_C57BL6NJ_T0024722.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205446994 205451572 - MGP_C57BL6NJ_P0024722 Traf5 protein_coding protein_coding MGP_C57BL6NJ_T0024723.1 MGP_C57BL6NJ_G0017351.1 mouse_genomes_project 1 205448021 205451572 - Traf5 protein_coding retained_intron MGP_C57BL6NJ_T0002929.1 MGP_C57BL6NJ_G0002771.1 mouse_genomes_project 1 38175170 38193714 + Gm15457 antisense antisense MGP_C57BL6NJ_T0022093.1 MGP_C57BL6NJ_G0016778.1 mouse_genomes_project 1 113659994 113668441 - MGP_C57BL6NJ_P0022093 protein_coding protein_coding MGP_C57BL6NJ_T0000577.1 MGP_C57BL6NJ_G0000493.1 mouse_genomes_project 1 37081883 37085435 - TEC TEC MGP_C57BL6NJ_T0023715.1 MGP_C57BL6NJ_G0017111.1 mouse_genomes_project 1 177950847 177971035 - MGP_C57BL6NJ_P0023715 Fmo9 protein_coding protein_coding MGP_C57BL6NJ_T0023716.1 MGP_C57BL6NJ_G0017111.1 mouse_genomes_project 1 177952080 177966877 - MGP_C57BL6NJ_P0023716 Fmo9 protein_coding protein_coding MGP_C57BL6NJ_T0012577.1 MGP_C57BL6NJ_G0010622.1 mouse_genomes_project 1 159114400 159115936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000917.1 MGP_C57BL6NJ_G0000829.1 mouse_genomes_project 1 200084841 200087844 - TEC TEC MGP_C57BL6NJ_T0020874.1 MGP_C57BL6NJ_G0016525.1 mouse_genomes_project 1 75988022 76056308 - MGP_C57BL6NJ_P0020874 Ankar protein_coding protein_coding MGP_C57BL6NJ_T0005911.1 MGP_C57BL6NJ_G0004960.1 mouse_genomes_project 1 63929055 63958172 + Gm11588 lincRNA lincRNA MGP_C57BL6NJ_T0003104.1 MGP_C57BL6NJ_G0002902.1 mouse_genomes_project 1 184007249 184008249 + Gm37950 antisense antisense MGP_C57BL6NJ_T0012171.1 MGP_C57BL6NJ_G0010216.1 mouse_genomes_project 1 8465986 8468977 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019628.1 MGP_C57BL6NJ_G0016294.1 mouse_genomes_project 1 33592200 33605708 - MGP_C57BL6NJ_P0019628 Bag2 protein_coding protein_coding MGP_C57BL6NJ_T0019629.1 MGP_C57BL6NJ_G0016294.1 mouse_genomes_project 1 33593455 33595436 - Bag2 protein_coding retained_intron MGP_C57BL6NJ_T0019630.1 MGP_C57BL6NJ_G0016294.1 mouse_genomes_project 1 33593518 33605654 - MGP_C57BL6NJ_P0019630 Bag2 protein_coding protein_coding MGP_C57BL6NJ_T0019631.1 MGP_C57BL6NJ_G0016294.1 mouse_genomes_project 1 33604685 33605640 - Bag2 protein_coding retained_intron MGP_C57BL6NJ_T0099612.1 MGP_C57BL6NJ_G0037658.1 mouse_genomes_project 1 99081339 99081441 - Gm22089 snRNA snRNA MGP_C57BL6NJ_T0023089.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162723947 162989642 - MGP_C57BL6NJ_P0023089 Rgl1 protein_coding protein_coding MGP_C57BL6NJ_T0023090.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162724138 162832185 - MGP_C57BL6NJ_P0023090 Rgl1 protein_coding protein_coding MGP_C57BL6NJ_T0023091.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162725937 162989688 - MGP_C57BL6NJ_P0023091 Rgl1 protein_coding protein_coding MGP_C57BL6NJ_T0023092.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162758446 162759983 - Rgl1 protein_coding retained_intron MGP_C57BL6NJ_T0023093.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162764481 162799704 - Rgl1 protein_coding processed_transcript MGP_C57BL6NJ_T0023094.1 MGP_C57BL6NJ_G0016991.1 mouse_genomes_project 1 162764481 162831997 - MGP_C57BL6NJ_P0023094 Rgl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000907.1 MGP_C57BL6NJ_G0000819.1 mouse_genomes_project 1 195224691 195228833 + TEC TEC MGP_C57BL6NJ_T0012337.1 MGP_C57BL6NJ_G0010382.1 mouse_genomes_project 1 62498000 62498471 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099584.1 MGP_C57BL6NJ_G0037630.1 mouse_genomes_project 1 33244230 33244336 + Gm23453 snRNA snRNA MGP_C57BL6NJ_T0012266.1 MGP_C57BL6NJ_G0010311.1 mouse_genomes_project 1 41346148 41346644 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012333.1 MGP_C57BL6NJ_G0010378.1 mouse_genomes_project 1 61054344 61054795 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020029.1 MGP_C57BL6NJ_G0016370.1 mouse_genomes_project 1 43826135 43868548 - MGP_C57BL6NJ_P0020029 Fhl2 protein_coding protein_coding MGP_C57BL6NJ_T0019986.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40872974 40902994 + MGP_C57BL6NJ_P0019986 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0019987.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40873098 40902996 + MGP_C57BL6NJ_P0019987 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0019988.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40873428 40912267 + MGP_C57BL6NJ_P0019988 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0019989.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40873428 40912268 + MGP_C57BL6NJ_P0019989 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0019990.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40873428 40912247 + MGP_C57BL6NJ_P0019990 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0019991.1 MGP_C57BL6NJ_G0016359.1 mouse_genomes_project 1 40879165 40907323 + MGP_C57BL6NJ_P0019991 Il18r1 protein_coding protein_coding MGP_C57BL6NJ_T0022096.1 MGP_C57BL6NJ_G0016780.1 mouse_genomes_project 1 113794998 113838866 + MGP_C57BL6NJ_P0022096 Serpinb7 protein_coding protein_coding MGP_C57BL6NJ_T0022097.1 MGP_C57BL6NJ_G0016780.1 mouse_genomes_project 1 113823934 113857795 + MGP_C57BL6NJ_P0022097 Serpinb7 protein_coding protein_coding MGP_C57BL6NJ_T0022410.1 MGP_C57BL6NJ_G0016851.1 mouse_genomes_project 1 139426999 139433080 + MGP_C57BL6NJ_P0022410 Il10 protein_coding protein_coding MGP_C57BL6NJ_T0005990.1 MGP_C57BL6NJ_G0005020.1 mouse_genomes_project 1 95180728 95186527 + 4930434B07Rik lincRNA lincRNA MGP_C57BL6NJ_T0099587.1 MGP_C57BL6NJ_G0037633.1 mouse_genomes_project 1 46639950 46640057 - Gm23216 snRNA snRNA MGP_C57BL6NJ_T0005986.1 MGP_C57BL6NJ_G0005016.1 mouse_genomes_project 1 93819576 93827650 - Gm29337 lincRNA lincRNA MGP_C57BL6NJ_T0000898.1 MGP_C57BL6NJ_G0000811.1 mouse_genomes_project 1 192925915 192929648 - TEC TEC MGP_C57BL6NJ_T0020457.1 MGP_C57BL6NJ_G0016449.1 mouse_genomes_project 1 61066740 61112266 + MGP_C57BL6NJ_P0020457 Casp8 protein_coding protein_coding MGP_C57BL6NJ_T0020458.1 MGP_C57BL6NJ_G0016449.1 mouse_genomes_project 1 61066843 61111517 + MGP_C57BL6NJ_P0020458 Casp8 protein_coding protein_coding MGP_C57BL6NJ_T0020459.1 MGP_C57BL6NJ_G0016449.1 mouse_genomes_project 1 61074181 61111771 + MGP_C57BL6NJ_P0020459 Casp8 protein_coding protein_coding MGP_C57BL6NJ_T0020460.1 MGP_C57BL6NJ_G0016449.1 mouse_genomes_project 1 61074332 61111517 + MGP_C57BL6NJ_P0020460 Casp8 protein_coding protein_coding MGP_C57BL6NJ_T0012150.1 MGP_C57BL6NJ_G0010195.1 mouse_genomes_project 1 4556834 4557012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022693.1 MGP_C57BL6NJ_G0016914.1 mouse_genomes_project 1 143257522 143266256 - MGP_C57BL6NJ_P0022693 Mgat4e protein_coding protein_coding MGP_C57BL6NJ_T0022694.1 MGP_C57BL6NJ_G0016914.1 mouse_genomes_project 1 143257526 143263602 - MGP_C57BL6NJ_P0022694 Mgat4e protein_coding protein_coding MGP_C57BL6NJ_T0022695.1 MGP_C57BL6NJ_G0016914.1 mouse_genomes_project 1 143257536 143263530 - MGP_C57BL6NJ_P0022695 Mgat4e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005913.1 MGP_C57BL6NJ_G0004962.1 mouse_genomes_project 1 64115423 64119466 - 4930587A21Rik lincRNA lincRNA MGP_C57BL6NJ_T0099613.1 MGP_C57BL6NJ_G0037659.1 mouse_genomes_project 1 102249532 102249639 + Gm26245 snRNA snRNA MGP_C57BL6NJ_T0006141.1 MGP_C57BL6NJ_G0005141.1 mouse_genomes_project 1 176970688 176971910 + Gm37073 lincRNA lincRNA MGP_C57BL6NJ_T0000599.1 MGP_C57BL6NJ_G0000515.1 mouse_genomes_project 1 54373721 54375637 - TEC TEC MGP_C57BL6NJ_T0006034.1 MGP_C57BL6NJ_G0005058.1 mouse_genomes_project 1 126724112 126746869 - Gm29456 lincRNA lincRNA MGP_C57BL6NJ_T0012236.1 MGP_C57BL6NJ_G0010281.1 mouse_genomes_project 1 33047502 33049195 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019646.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33759296 34171782 + MGP_C57BL6NJ_P0019646 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019647.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33759343 34171782 + MGP_C57BL6NJ_P0019647 Dst protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019648.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33861755 34035301 + MGP_C57BL6NJ_P0019648 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019649.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33861757 33996834 + MGP_C57BL6NJ_P0019649 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019650.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33862001 33996835 + MGP_C57BL6NJ_P0019650 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019651.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33862055 34025361 + Dst protein_coding retained_intron MGP_C57BL6NJ_T0019652.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33867688 34174350 + MGP_C57BL6NJ_P0019652 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019653.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33867700 34174359 + MGP_C57BL6NJ_P0019653 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019654.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33867700 34174348 + MGP_C57BL6NJ_P0019654 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019655.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33948886 33978834 + Dst protein_coding retained_intron MGP_C57BL6NJ_T0019656.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 33981248 34015182 + Dst protein_coding processed_transcript MGP_C57BL6NJ_T0019657.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34020990 34044410 + MGP_C57BL6NJ_P0019657 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019658.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34020990 34174102 + MGP_C57BL6NJ_P0019658 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019659.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34020990 34053768 + MGP_C57BL6NJ_P0019659 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019660.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34022584 34026062 + Dst protein_coding retained_intron MGP_C57BL6NJ_T0019661.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34039411 34043753 + Dst protein_coding retained_intron MGP_C57BL6NJ_T0019662.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34120638 34174102 + MGP_C57BL6NJ_P0019662 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019663.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34133375 34135098 + Dst protein_coding retained_intron MGP_C57BL6NJ_T0019664.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34157648 34167657 + MGP_C57BL6NJ_P0019664 Dst protein_coding protein_coding MGP_C57BL6NJ_T0019665.1 MGP_C57BL6NJ_G0016297.1 mouse_genomes_project 1 34158639 34170841 + MGP_C57BL6NJ_P0019665 Dst protein_coding protein_coding MGP_C57BL6NJ_T0100849.1 MGP_C57BL6NJ_G0038895.1 mouse_genomes_project 1 13803497 13803629 + Gm25168 snoRNA snoRNA MGP_C57BL6NJ_T0012586.1 MGP_C57BL6NJ_G0010631.1 mouse_genomes_project 1 162610504 162610956 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020200.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54350616 54371833 + MGP_C57BL6NJ_P0020200 Nemp2 protein_coding protein_coding MGP_C57BL6NJ_T0020201.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54350650 54371833 + MGP_C57BL6NJ_P0020201 Nemp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020202.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54350660 54370550 + MGP_C57BL6NJ_P0020202 Nemp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020203.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54350665 54370643 + Nemp2 protein_coding retained_intron MGP_C57BL6NJ_T0020204.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54350710 54370616 + MGP_C57BL6NJ_P0020204 Nemp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020205.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54361429 54371833 + Nemp2 protein_coding retained_intron MGP_C57BL6NJ_T0020206.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54361897 54370570 + Nemp2 protein_coding processed_transcript MGP_C57BL6NJ_T0020207.1 MGP_C57BL6NJ_G0016399.1 mouse_genomes_project 1 54365094 54369941 + Nemp2 protein_coding retained_intron MGP_C57BL6NJ_T0012672.1 MGP_C57BL6NJ_G0010717.1 mouse_genomes_project 1 206328163 206328635 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100860.1 MGP_C57BL6NJ_G0038906.1 mouse_genomes_project 1 39857509 39857725 + Gm24826 snoRNA snoRNA MGP_C57BL6NJ_T0021841.1 MGP_C57BL6NJ_G0016724.1 mouse_genomes_project 1 98108169 98109624 + MGP_C57BL6NJ_P0021841 Dusp28 protein_coding protein_coding MGP_C57BL6NJ_T0009756.1 MGP_C57BL6NJ_G0007841.1 mouse_genomes_project 1 208366020 208366084 + Mir3962 miRNA miRNA MGP_C57BL6NJ_T0012414.1 MGP_C57BL6NJ_G0010459.1 mouse_genomes_project 1 90911781 90912616 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021222.1 MGP_C57BL6NJ_G0016583.1 mouse_genomes_project 1 79040652 79043942 + MGP_C57BL6NJ_P0021222 Inha protein_coding protein_coding MGP_C57BL6NJ_T0102682.1 MGP_C57BL6NJ_G0040477.1 mouse_genomes_project 1 148688439 148766555 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000849.1 MGP_C57BL6NJ_G0000763.1 mouse_genomes_project 1 171786075 171791194 + TEC TEC MGP_C57BL6NJ_T0012515.1 MGP_C57BL6NJ_G0010560.1 mouse_genomes_project 1 127343801 127344465 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102707.1 MGP_C57BL6NJ_G0040502.1 mouse_genomes_project 1 193652832 193661897 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000562.1 MGP_C57BL6NJ_G0000479.1 mouse_genomes_project 1 32760017 32765024 - TEC TEC MGP_C57BL6NJ_T0023498.1 MGP_C57BL6NJ_G0017063.1 mouse_genomes_project 1 173563959 173594715 + MGP_C57BL6NJ_P0023498 Vamp4 protein_coding protein_coding MGP_C57BL6NJ_T0023499.1 MGP_C57BL6NJ_G0017063.1 mouse_genomes_project 1 173564071 173575427 + Vamp4 protein_coding retained_intron MGP_C57BL6NJ_T0023500.1 MGP_C57BL6NJ_G0017063.1 mouse_genomes_project 1 173564086 173594714 + MGP_C57BL6NJ_P0023500 Vamp4 protein_coding protein_coding MGP_C57BL6NJ_T0023501.1 MGP_C57BL6NJ_G0017063.1 mouse_genomes_project 1 173564272 173594709 + MGP_C57BL6NJ_P0023501 Vamp4 protein_coding protein_coding MGP_C57BL6NJ_T0023502.1 MGP_C57BL6NJ_G0017063.1 mouse_genomes_project 1 173568265 173589437 + Vamp4 protein_coding processed_transcript MGP_C57BL6NJ_T0000811.1 MGP_C57BL6NJ_G0000725.1 mouse_genomes_project 1 161573607 161576044 + TEC TEC MGP_C57BL6NJ_T0024423.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194575585 194708863 - MGP_C57BL6NJ_P0024423 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024424.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194583558 194709020 - MGP_C57BL6NJ_P0024424 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024425.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194583605 194709010 - MGP_C57BL6NJ_P0024425 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024426.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194583605 194709010 - MGP_C57BL6NJ_P0024426 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024427.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584484 194589333 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024428.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584638 194587767 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024429.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584666 194702536 - MGP_C57BL6NJ_P0024429 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024430.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584673 194708863 - MGP_C57BL6NJ_P0024430 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024431.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584673 194708863 - MGP_C57BL6NJ_P0024431 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024432.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584673 194708863 - MGP_C57BL6NJ_P0024432 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024433.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194584868 194599538 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024434.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194591636 194593526 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024435.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194601618 194605883 - MGP_C57BL6NJ_P0024435 Enah protein_coding protein_coding MGP_C57BL6NJ_T0024436.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194605317 194640373 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024437.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194617855 194624685 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0024438.1 MGP_C57BL6NJ_G0017289.1 mouse_genomes_project 1 194639971 194708878 - Enah protein_coding retained_intron MGP_C57BL6NJ_T0102693.1 MGP_C57BL6NJ_G0040488.1 mouse_genomes_project 1 185767832 185945694 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000936.1 MGP_C57BL6NJ_G0000847.1 mouse_genomes_project 1 208211558 208215122 + TEC TEC MGP_C57BL6NJ_T0012447.1 MGP_C57BL6NJ_G0010492.1 mouse_genomes_project 1 104009821 104010805 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019944.1 MGP_C57BL6NJ_G0016350.1 mouse_genomes_project 1 39894803 39921804 - MGP_C57BL6NJ_P0019944 Rnf149 protein_coding protein_coding MGP_C57BL6NJ_T0019945.1 MGP_C57BL6NJ_G0016350.1 mouse_genomes_project 1 39895976 39921755 - MGP_C57BL6NJ_P0019945 Rnf149 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019946.1 MGP_C57BL6NJ_G0016350.1 mouse_genomes_project 1 39899112 39902265 - Rnf149 protein_coding retained_intron MGP_C57BL6NJ_T0019947.1 MGP_C57BL6NJ_G0016350.1 mouse_genomes_project 1 39908600 39921702 - MGP_C57BL6NJ_P0019947 Rnf149 protein_coding protein_coding MGP_C57BL6NJ_T0023574.1 MGP_C57BL6NJ_G0017081.1 mouse_genomes_project 1 175178192 175200392 + MGP_C57BL6NJ_P0023574 Sell protein_coding protein_coding MGP_C57BL6NJ_T0023575.1 MGP_C57BL6NJ_G0017081.1 mouse_genomes_project 1 175178295 175196883 + MGP_C57BL6NJ_P0023575 Sell protein_coding protein_coding MGP_C57BL6NJ_T0023576.1 MGP_C57BL6NJ_G0017081.1 mouse_genomes_project 1 175178399 175195903 + MGP_C57BL6NJ_P0023576 Sell protein_coding protein_coding MGP_C57BL6NJ_T0023577.1 MGP_C57BL6NJ_G0017081.1 mouse_genomes_project 1 175185172 175196207 + MGP_C57BL6NJ_P0023577 Sell protein_coding protein_coding MGP_C57BL6NJ_T0012213.1 MGP_C57BL6NJ_G0010258.1 mouse_genomes_project 1 23923503 23924312 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022918.1 MGP_C57BL6NJ_G0016958.1 mouse_genomes_project 1 148599024 148622241 + MGP_C57BL6NJ_P0022918 F13b protein_coding protein_coding MGP_C57BL6NJ_T0022919.1 MGP_C57BL6NJ_G0016958.1 mouse_genomes_project 1 148614882 148616393 + F13b protein_coding processed_transcript MGP_C57BL6NJ_T0024365.1 MGP_C57BL6NJ_G0017272.1 mouse_genomes_project 1 193160440 193164137 - MGP_C57BL6NJ_P0024365 Mixl1 protein_coding protein_coding MGP_C57BL6NJ_T0024223.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189001761 189146812 + Sdccag8 protein_coding retained_intron MGP_C57BL6NJ_T0024224.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189001761 189037900 + Sdccag8 protein_coding retained_intron MGP_C57BL6NJ_T0024225.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189001761 189049241 + MGP_C57BL6NJ_P0024225 Sdccag8 protein_coding protein_coding MGP_C57BL6NJ_T0024226.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189001761 189210553 + MGP_C57BL6NJ_P0024226 Sdccag8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024227.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189001761 189210553 + MGP_C57BL6NJ_P0024227 Sdccag8 protein_coding protein_coding MGP_C57BL6NJ_T0024228.1 MGP_C57BL6NJ_G0017247.1 mouse_genomes_project 1 189188369 189210553 + Sdccag8 protein_coding processed_transcript MGP_C57BL6NJ_T0012425.1 MGP_C57BL6NJ_G0010470.1 mouse_genomes_project 1 92213715 92214746 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012153.1 MGP_C57BL6NJ_G0010198.1 mouse_genomes_project 1 5013389 5015484 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005998.1 MGP_C57BL6NJ_G0005028.1 mouse_genomes_project 1 96720124 96732375 + Gm28380 lincRNA lincRNA MGP_C57BL6NJ_T0024033.1 MGP_C57BL6NJ_G0017186.1 mouse_genomes_project 1 184041050 184067431 - MGP_C57BL6NJ_P0024033 Atp1a2 protein_coding protein_coding MGP_C57BL6NJ_T0024034.1 MGP_C57BL6NJ_G0017186.1 mouse_genomes_project 1 184043868 184067431 - Atp1a2 protein_coding retained_intron MGP_C57BL6NJ_T0024035.1 MGP_C57BL6NJ_G0017186.1 mouse_genomes_project 1 184045243 184045804 - Atp1a2 protein_coding retained_intron MGP_C57BL6NJ_T0024036.1 MGP_C57BL6NJ_G0017186.1 mouse_genomes_project 1 184047408 184067431 - MGP_C57BL6NJ_P0024036 Atp1a2 protein_coding protein_coding MGP_C57BL6NJ_T0024037.1 MGP_C57BL6NJ_G0017186.1 mouse_genomes_project 1 184053675 184067431 - Atp1a2 protein_coding retained_intron MGP_C57BL6NJ_T0023654.1 MGP_C57BL6NJ_G0017099.1 mouse_genomes_project 1 176882524 176952361 - MGP_C57BL6NJ_P0023654 Rcsd1 protein_coding protein_coding MGP_C57BL6NJ_T0023655.1 MGP_C57BL6NJ_G0017099.1 mouse_genomes_project 1 176884955 176952323 - MGP_C57BL6NJ_P0023655 Rcsd1 protein_coding protein_coding MGP_C57BL6NJ_T0023656.1 MGP_C57BL6NJ_G0017099.1 mouse_genomes_project 1 176903831 176953668 - MGP_C57BL6NJ_P0023656 Rcsd1 protein_coding protein_coding MGP_C57BL6NJ_T0023657.1 MGP_C57BL6NJ_G0017099.1 mouse_genomes_project 1 176948796 176954001 - Rcsd1 protein_coding retained_intron MGP_C57BL6NJ_T0023658.1 MGP_C57BL6NJ_G0017099.1 mouse_genomes_project 1 176952713 176954032 - Rcsd1 protein_coding processed_transcript MGP_C57BL6NJ_T0000504.1 MGP_C57BL6NJ_G0000423.1 mouse_genomes_project 1 8441067 8442989 - TEC TEC MGP_C57BL6NJ_T0022636.1 MGP_C57BL6NJ_G0016899.1 mouse_genomes_project 1 142567115 142578224 - MGP_C57BL6NJ_P0022636 Prelp protein_coding protein_coding MGP_C57BL6NJ_T0022637.1 MGP_C57BL6NJ_G0016899.1 mouse_genomes_project 1 142569531 142578221 - Prelp protein_coding processed_transcript MGP_C57BL6NJ_T0102705.1 MGP_C57BL6NJ_G0040500.1 mouse_genomes_project 1 193548379 193548511 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012561.1 MGP_C57BL6NJ_G0010606.1 mouse_genomes_project 1 152053827 152056700 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019293.1 MGP_C57BL6NJ_G0016222.1 mouse_genomes_project 1 7561587 7570507 - MGP_C57BL6NJ_P0019293 Tcf24 protein_coding protein_coding MGP_C57BL6NJ_T0019294.1 MGP_C57BL6NJ_G0016222.1 mouse_genomes_project 1 7561595 7564234 - MGP_C57BL6NJ_P0019294 Tcf24 protein_coding protein_coding MGP_C57BL6NJ_T0000803.1 MGP_C57BL6NJ_G0000717.1 mouse_genomes_project 1 156955419 156956604 - TEC TEC MGP_C57BL6NJ_T0017472.1 MGP_C57BL6NJ_G0015497.1 mouse_genomes_project 1 86838263 86872696 - C430014B12Rik processed_transcript antisense MGP_C57BL6NJ_T0017473.1 MGP_C57BL6NJ_G0015497.1 mouse_genomes_project 1 86866292 86872748 - C430014B12Rik processed_transcript antisense MGP_C57BL6NJ_T0017474.1 MGP_C57BL6NJ_G0015497.1 mouse_genomes_project 1 86868152 86872726 - C430014B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0100874.1 MGP_C57BL6NJ_G0038920.1 mouse_genomes_project 1 62036705 62036786 + Gm26287 snoRNA snoRNA MGP_C57BL6NJ_T0023032.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160595560 161072402 - MGP_C57BL6NJ_P0023032 Hmcn1 protein_coding protein_coding MGP_C57BL6NJ_T0023033.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160596563 161072402 - MGP_C57BL6NJ_P0023033 Hmcn1 protein_coding protein_coding MGP_C57BL6NJ_T0023034.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160596720 160619009 - MGP_C57BL6NJ_P0023034 Hmcn1 protein_coding protein_coding MGP_C57BL6NJ_T0023035.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160596747 160598641 - Hmcn1 protein_coding retained_intron MGP_C57BL6NJ_T0023036.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160613231 160616412 - Hmcn1 protein_coding processed_transcript MGP_C57BL6NJ_T0023037.1 MGP_C57BL6NJ_G0016981.1 mouse_genomes_project 1 160936977 161072786 - Hmcn1 protein_coding retained_intron MGP_C57BL6NJ_T0017551.1 MGP_C57BL6NJ_G0015519.1 mouse_genomes_project 1 184335683 184349434 - 4933439K11Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017552.1 MGP_C57BL6NJ_G0015519.1 mouse_genomes_project 1 184339170 184349571 - 4933439K11Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017553.1 MGP_C57BL6NJ_G0015519.1 mouse_genomes_project 1 184348022 184356866 - 4933439K11Rik processed_transcript antisense MGP_C57BL6NJ_T0023833.1 MGP_C57BL6NJ_G0017144.1 mouse_genomes_project 1 182787068 182810856 - MGP_C57BL6NJ_P0023833 Sdhc protein_coding protein_coding MGP_C57BL6NJ_T0023834.1 MGP_C57BL6NJ_G0017144.1 mouse_genomes_project 1 182789275 182810844 - MGP_C57BL6NJ_P0023834 Sdhc protein_coding protein_coding MGP_C57BL6NJ_T0023835.1 MGP_C57BL6NJ_G0017144.1 mouse_genomes_project 1 182798593 182810841 - MGP_C57BL6NJ_P0023835 Sdhc protein_coding protein_coding MGP_C57BL6NJ_T0022460.1 MGP_C57BL6NJ_G0016863.1 mouse_genomes_project 1 140261480 140285560 + MGP_C57BL6NJ_P0022460 Pm20d1 protein_coding protein_coding MGP_C57BL6NJ_T0022461.1 MGP_C57BL6NJ_G0016863.1 mouse_genomes_project 1 140261497 140285572 + MGP_C57BL6NJ_P0022461 Pm20d1 protein_coding protein_coding MGP_C57BL6NJ_T0022462.1 MGP_C57BL6NJ_G0016863.1 mouse_genomes_project 1 140276228 140280475 + MGP_C57BL6NJ_P0022462 Pm20d1 protein_coding protein_coding MGP_C57BL6NJ_T0022463.1 MGP_C57BL6NJ_G0016863.1 mouse_genomes_project 1 140276266 140276504 + Pm20d1 protein_coding processed_transcript MGP_C57BL6NJ_T0022512.1 MGP_C57BL6NJ_G0016873.1 mouse_genomes_project 1 140815473 140824204 + MGP_C57BL6NJ_P0022512 Klhdc8a protein_coding protein_coding MGP_C57BL6NJ_T0099309.1 MGP_C57BL6NJ_G0037372.1 mouse_genomes_project 1 171138709 171145850 - Gm37529 sense_intronic sense_intronic MGP_C57BL6NJ_T0019273.1 MGP_C57BL6NJ_G0016219.1 mouse_genomes_project 1 7302427 7331301 - MGP_C57BL6NJ_P0019273 Vcpip1 protein_coding protein_coding MGP_C57BL6NJ_T0019193.1 MGP_C57BL6NJ_G0016203.1 mouse_genomes_project 1 2008440 2053249 + MGP_C57BL6NJ_P0019193 Tcea1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000534.1 MGP_C57BL6NJ_G0000451.1 mouse_genomes_project 1 22914453 22917253 + TEC TEC MGP_C57BL6NJ_T0099314.1 MGP_C57BL6NJ_G0037377.1 mouse_genomes_project 1 200118795 200122292 - Gm15509 sense_intronic sense_intronic MGP_C57BL6NJ_T0012556.1 MGP_C57BL6NJ_G0010601.1 mouse_genomes_project 1 148192759 148193534 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012466.1 MGP_C57BL6NJ_G0010511.1 mouse_genomes_project 1 110868908 110869688 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000605.1 MGP_C57BL6NJ_G0000521.1 mouse_genomes_project 1 57029559 57031353 - TEC TEC MGP_C57BL6NJ_T0000676.1 MGP_C57BL6NJ_G0000592.1 mouse_genomes_project 1 89138604 89147863 - TEC TEC MGP_C57BL6NJ_T0006018.1 MGP_C57BL6NJ_G0005045.1 mouse_genomes_project 1 111364115 111374992 + Gm29012 lincRNA lincRNA MGP_C57BL6NJ_T0000606.1 MGP_C57BL6NJ_G0000522.1 mouse_genomes_project 1 57604359 57605955 + TEC TEC MGP_C57BL6NJ_T0000752.1 MGP_C57BL6NJ_G0000668.1 mouse_genomes_project 1 138142254 138144474 + TEC TEC MGP_C57BL6NJ_T0022218.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127587224 127657361 + MGP_C57BL6NJ_P0022218 3110009E18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022219.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127587232 127657361 + MGP_C57BL6NJ_P0022219 3110009E18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022220.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127587237 127657361 + MGP_C57BL6NJ_P0022220 3110009E18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022221.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127616560 127632482 + 3110009E18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0022222.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127616632 127636534 + MGP_C57BL6NJ_P0022222 3110009E18Rik protein_coding protein_coding MGP_C57BL6NJ_T0022223.1 MGP_C57BL6NJ_G0016808.1 mouse_genomes_project 1 127626439 127642003 + 3110009E18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0019286.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7508330 7522228 + MGP_C57BL6NJ_P0019286 Mcmdc2 protein_coding protein_coding MGP_C57BL6NJ_T0019287.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7508330 7542379 + MGP_C57BL6NJ_P0019287 Mcmdc2 protein_coding protein_coding MGP_C57BL6NJ_T0019288.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7508360 7541877 + MGP_C57BL6NJ_P0019288 Mcmdc2 protein_coding protein_coding MGP_C57BL6NJ_T0019289.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7508362 7543510 + MGP_C57BL6NJ_P0019289 Mcmdc2 protein_coding protein_coding MGP_C57BL6NJ_T0019290.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7511006 7520969 + MGP_C57BL6NJ_P0019290 Mcmdc2 protein_coding protein_coding MGP_C57BL6NJ_T0019291.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7511411 7541991 + MGP_C57BL6NJ_P0019291 Mcmdc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019292.1 MGP_C57BL6NJ_G0016221.1 mouse_genomes_project 1 7533544 7542379 + MGP_C57BL6NJ_P0019292 Mcmdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000841.1 MGP_C57BL6NJ_G0000755.1 mouse_genomes_project 1 171408003 171411660 - TEC TEC MGP_C57BL6NJ_T0022423.1 MGP_C57BL6NJ_G0016855.1 mouse_genomes_project 1 139598582 139675472 - MGP_C57BL6NJ_P0022423 Rassf5 protein_coding protein_coding MGP_C57BL6NJ_T0022424.1 MGP_C57BL6NJ_G0016855.1 mouse_genomes_project 1 139598586 139621932 - MGP_C57BL6NJ_P0022424 Rassf5 protein_coding protein_coding MGP_C57BL6NJ_T0022425.1 MGP_C57BL6NJ_G0016855.1 mouse_genomes_project 1 139631157 139675600 - Rassf5 protein_coding processed_transcript MGP_C57BL6NJ_T0022211.1 MGP_C57BL6NJ_G0016806.1 mouse_genomes_project 1 127528248 127537359 - MGP_C57BL6NJ_P0022211 Tmem37 protein_coding protein_coding MGP_C57BL6NJ_T0012674.1 MGP_C57BL6NJ_G0010719.1 mouse_genomes_project 1 206941810 206942213 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100899.1 MGP_C57BL6NJ_G0038945.1 mouse_genomes_project 1 116161740 116161870 - Gm22159 snoRNA snoRNA MGP_C57BL6NJ_T0012503.1 MGP_C57BL6NJ_G0010548.1 mouse_genomes_project 1 125033729 125034071 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000622.1 MGP_C57BL6NJ_G0000538.1 mouse_genomes_project 1 64170234 64173192 + TEC TEC MGP_C57BL6NJ_T0012361.1 MGP_C57BL6NJ_G0010406.1 mouse_genomes_project 1 67633641 67634020 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024591.1 MGP_C57BL6NJ_G0017325.1 mouse_genomes_project 1 201358483 201459069 + Ush2a protein_coding retained_intron MGP_C57BL6NJ_T0024592.1 MGP_C57BL6NJ_G0017325.1 mouse_genomes_project 1 201358495 201562430 + Ush2a protein_coding retained_intron MGP_C57BL6NJ_T0024593.1 MGP_C57BL6NJ_G0017325.1 mouse_genomes_project 1 201359494 202118466 + MGP_C57BL6NJ_P0024593 Ush2a protein_coding protein_coding MGP_C57BL6NJ_T0024594.1 MGP_C57BL6NJ_G0017325.1 mouse_genomes_project 1 201655267 201809258 + Ush2a protein_coding retained_intron MGP_C57BL6NJ_T0024595.1 MGP_C57BL6NJ_G0017325.1 mouse_genomes_project 1 202107190 202118390 + MGP_C57BL6NJ_P0024595 Ush2a protein_coding protein_coding MGP_C57BL6NJ_T0012331.1 MGP_C57BL6NJ_G0010376.1 mouse_genomes_project 1 60854882 60968194 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006053.1 MGP_C57BL6NJ_G0005071.1 mouse_genomes_project 1 129849751 129897571 + Gm28590 lincRNA lincRNA MGP_C57BL6NJ_T0019274.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386856 7500542 + MGP_C57BL6NJ_P0019274 Sgk3 protein_coding protein_coding MGP_C57BL6NJ_T0019275.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386892 7500544 + MGP_C57BL6NJ_P0019275 Sgk3 protein_coding protein_coding MGP_C57BL6NJ_T0019276.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386892 7500469 + MGP_C57BL6NJ_P0019276 Sgk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019277.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386907 7423291 + Sgk3 protein_coding retained_intron MGP_C57BL6NJ_T0019278.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386934 7499317 + MGP_C57BL6NJ_P0019278 Sgk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019279.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7386957 7499707 + MGP_C57BL6NJ_P0019279 Sgk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019280.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7445374 7500542 + MGP_C57BL6NJ_P0019280 Sgk3 protein_coding protein_coding MGP_C57BL6NJ_T0019281.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7445423 7464073 + Sgk3 protein_coding processed_transcript MGP_C57BL6NJ_T0019282.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7445423 7470996 + Sgk3 protein_coding retained_intron MGP_C57BL6NJ_T0019283.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7445499 7499552 + MGP_C57BL6NJ_P0019283 Sgk3 protein_coding protein_coding MGP_C57BL6NJ_T0019284.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7482846 7488360 + Sgk3 protein_coding retained_intron MGP_C57BL6NJ_T0019285.1 MGP_C57BL6NJ_G0016220.1 mouse_genomes_project 1 7495125 7498873 + Sgk3 protein_coding retained_intron MGP_C57BL6NJ_T0012201.1 MGP_C57BL6NJ_G0010246.1 mouse_genomes_project 1 19922111 19922339 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012136.1 MGP_C57BL6NJ_G0010181.1 mouse_genomes_project 1 2444483 2445373 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021833.1 MGP_C57BL6NJ_G0016722.1 mouse_genomes_project 1 98031003 98060111 + MGP_C57BL6NJ_P0021833 Gpc1 protein_coding protein_coding MGP_C57BL6NJ_T0021834.1 MGP_C57BL6NJ_G0016722.1 mouse_genomes_project 1 98031327 98035036 + Gpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0021835.1 MGP_C57BL6NJ_G0016722.1 mouse_genomes_project 1 98052559 98055330 + Gpc1 protein_coding retained_intron MGP_C57BL6NJ_T0021836.1 MGP_C57BL6NJ_G0016722.1 mouse_genomes_project 1 98055923 98056854 + Gpc1 protein_coding retained_intron MGP_C57BL6NJ_T0021837.1 MGP_C57BL6NJ_G0016722.1 mouse_genomes_project 1 98056129 98056927 + Gpc1 protein_coding retained_intron MGP_C57BL6NJ_T0024298.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192386541 192600945 + MGP_C57BL6NJ_P0024298 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024299.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192386654 192603392 + MGP_C57BL6NJ_P0024299 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024300.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192386829 192547495 + MGP_C57BL6NJ_P0024300 Cdc42bpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024301.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192387179 192603400 + MGP_C57BL6NJ_P0024301 Cdc42bpa protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024302.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192387179 192599955 + MGP_C57BL6NJ_P0024302 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024303.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192387179 192599955 + MGP_C57BL6NJ_P0024303 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024304.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192402887 192472361 + Cdc42bpa protein_coding processed_transcript MGP_C57BL6NJ_T0024305.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192418802 192469106 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0024306.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192520086 192530450 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0024307.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192536747 192600377 + MGP_C57BL6NJ_P0024307 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024308.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192542620 192554561 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0024309.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192544595 192547770 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0024310.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192544795 192603391 + MGP_C57BL6NJ_P0024310 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024311.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192544868 192587026 + MGP_C57BL6NJ_P0024311 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024312.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192546942 192573112 + MGP_C57BL6NJ_P0024312 Cdc42bpa protein_coding protein_coding MGP_C57BL6NJ_T0024313.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192546960 192551911 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0024314.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192559196 192574940 + Cdc42bpa protein_coding processed_transcript MGP_C57BL6NJ_T0024315.1 MGP_C57BL6NJ_G0017265.1 mouse_genomes_project 1 192598795 192600083 + Cdc42bpa protein_coding retained_intron MGP_C57BL6NJ_T0012245.1 MGP_C57BL6NJ_G0010290.1 mouse_genomes_project 1 34430888 34431180 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000568.1 MGP_C57BL6NJ_G0000484.1 mouse_genomes_project 1 33740645 33742273 - TEC TEC MGP_C57BL6NJ_T0012536.1 MGP_C57BL6NJ_G0010581.1 mouse_genomes_project 1 136987939 136988361 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017456.1 MGP_C57BL6NJ_G0015489.1 mouse_genomes_project 1 44867271 44885580 - Gm29247 processed_transcript processed_transcript MGP_C57BL6NJ_T0017457.1 MGP_C57BL6NJ_G0015489.1 mouse_genomes_project 1 44867372 44886325 - Gm29247 processed_transcript processed_transcript MGP_C57BL6NJ_T0012660.1 MGP_C57BL6NJ_G0010705.1 mouse_genomes_project 1 200063480 200063805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017478.1 MGP_C57BL6NJ_G0015499.1 mouse_genomes_project 1 92988106 92996198 - processed_transcript processed_transcript MGP_C57BL6NJ_T0012611.1 MGP_C57BL6NJ_G0010656.1 mouse_genomes_project 1 174698568 174699488 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012587.1 MGP_C57BL6NJ_G0010632.1 mouse_genomes_project 1 163181894 163182597 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023198.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165633611 165635122 - BC034090 protein_coding retained_intron MGP_C57BL6NJ_T0023199.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165633613 165667356 - MGP_C57BL6NJ_P0023199 BC034090 protein_coding protein_coding MGP_C57BL6NJ_T0023200.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165638661 165647216 - BC034090 protein_coding processed_transcript MGP_C57BL6NJ_T0023201.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165639411 165646965 - BC034090 protein_coding processed_transcript MGP_C57BL6NJ_T0023202.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165647480 165651685 - BC034090 protein_coding processed_transcript MGP_C57BL6NJ_T0023203.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165647830 165654702 - MGP_C57BL6NJ_P0023203 BC034090 protein_coding protein_coding MGP_C57BL6NJ_T0023204.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165647914 165664033 - BC034090 protein_coding retained_intron MGP_C57BL6NJ_T0023205.1 MGP_C57BL6NJ_G0017015.1 mouse_genomes_project 1 165650904 165653695 - BC034090 protein_coding retained_intron MGP_C57BL6NJ_T0012406.1 MGP_C57BL6NJ_G0010451.1 mouse_genomes_project 1 87208897 87210323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024120.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185766456 185937147 - MGP_C57BL6NJ_P0024120 Ifi203 protein_coding protein_coding MGP_C57BL6NJ_T0024121.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185766456 186008411 - MGP_C57BL6NJ_P0024121 Ifi203 protein_coding protein_coding MGP_C57BL6NJ_T0024122.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185766456 185937147 - MGP_C57BL6NJ_P0024122 Ifi203 protein_coding protein_coding MGP_C57BL6NJ_T0024123.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185766456 185946027 - MGP_C57BL6NJ_P0024123 Ifi203 protein_coding protein_coding MGP_C57BL6NJ_T0024124.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185771441 185935648 - Ifi203 protein_coding processed_transcript MGP_C57BL6NJ_T0024125.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185771813 185937147 - MGP_C57BL6NJ_P0024125 Ifi203 protein_coding protein_coding MGP_C57BL6NJ_T0024126.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185778654 185945731 - Ifi203 protein_coding processed_transcript MGP_C57BL6NJ_T0024127.1 MGP_C57BL6NJ_G0017215.1 mouse_genomes_project 1 185822088 185945694 - Ifi203 protein_coding processed_transcript MGP_C57BL6NJ_T0021920.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719908 98742605 + MGP_C57BL6NJ_P0021920 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021921.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719911 98743992 + MGP_C57BL6NJ_P0021921 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021922.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719939 98741240 + Sept2 protein_coding retained_intron MGP_C57BL6NJ_T0021923.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719953 98740846 + MGP_C57BL6NJ_P0021923 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021924.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719960 98752103 + MGP_C57BL6NJ_P0021924 Sept2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021925.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719977 98723286 + Sept2 protein_coding retained_intron MGP_C57BL6NJ_T0021926.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98719977 98743996 + MGP_C57BL6NJ_P0021926 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021927.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98720026 98744021 + MGP_C57BL6NJ_P0021927 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021928.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98720138 98742523 + MGP_C57BL6NJ_P0021928 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021929.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98720141 98742605 + MGP_C57BL6NJ_P0021929 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021930.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98720391 98744019 + MGP_C57BL6NJ_P0021930 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0021931.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98748685 98750512 + Sept2 protein_coding retained_intron MGP_C57BL6NJ_T0021932.1 MGP_C57BL6NJ_G0016739.1 mouse_genomes_project 1 98749060 98750839 + MGP_C57BL6NJ_P0021932 Sept2 protein_coding protein_coding MGP_C57BL6NJ_T0022660.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142976987 143022695 - MGP_C57BL6NJ_P0022660 Ppfia4 protein_coding protein_coding MGP_C57BL6NJ_T0022661.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142976988 143034150 - MGP_C57BL6NJ_P0022661 Ppfia4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022662.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142976988 143017033 - MGP_C57BL6NJ_P0022662 Ppfia4 protein_coding protein_coding MGP_C57BL6NJ_T0022663.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142976989 142985051 - Ppfia4 protein_coding processed_transcript MGP_C57BL6NJ_T0022664.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142976993 142985013 - Ppfia4 protein_coding retained_intron MGP_C57BL6NJ_T0022665.1 MGP_C57BL6NJ_G0016907.1 mouse_genomes_project 1 142978585 142993511 - Ppfia4 protein_coding retained_intron MGP_C57BL6NJ_T0012434.1 MGP_C57BL6NJ_G0010479.1 mouse_genomes_project 1 96268303 96269023 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024154.1 MGP_C57BL6NJ_G0017234.1 mouse_genomes_project 1 186535927 186543253 + MGP_C57BL6NJ_P0024154 Olfr220 protein_coding protein_coding MGP_C57BL6NJ_T0024155.1 MGP_C57BL6NJ_G0017234.1 mouse_genomes_project 1 186542275 186543253 + MGP_C57BL6NJ_P0024155 Olfr220 protein_coding protein_coding MGP_C57BL6NJ_T0022607.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142244162 142293512 - MGP_C57BL6NJ_P0022607 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022608.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142244171 142293574 - MGP_C57BL6NJ_P0022608 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022610.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142248891 142251533 - Zc3h11a protein_coding processed_transcript MGP_C57BL6NJ_T0022611.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142251430 142263417 - MGP_C57BL6NJ_P0022611 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022612.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142263130 142293572 - MGP_C57BL6NJ_P0022612 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022613.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142263388 142293552 - MGP_C57BL6NJ_P0022613 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022614.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142266162 142293554 - Zc3h11a protein_coding retained_intron MGP_C57BL6NJ_T0022615.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142266453 142293476 - MGP_C57BL6NJ_P0022615 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022616.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142271576 142293490 - MGP_C57BL6NJ_P0022616 Zc3h11a protein_coding protein_coding MGP_C57BL6NJ_T0022617.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142273012 142293475 - Zc3h11a protein_coding retained_intron MGP_C57BL6NJ_T0022618.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142273265 142293562 - Zc3h11a protein_coding processed_transcript MGP_C57BL6NJ_T0022619.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142285428 142293553 - Zc3h11a protein_coding processed_transcript MGP_C57BL6NJ_T0022620.1 MGP_C57BL6NJ_G0016893.1 mouse_genomes_project 1 142285772 142293574 - Zc3h11a protein_coding retained_intron MGP_C57BL6NJ_T0000662.1 MGP_C57BL6NJ_G0000578.1 mouse_genomes_project 1 84673099 84676655 - TEC TEC MGP_C57BL6NJ_T0021184.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957929 78967189 + MGP_C57BL6NJ_P0021184 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021185.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957942 78967188 + MGP_C57BL6NJ_P0021185 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021186.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957960 78960871 + MGP_C57BL6NJ_P0021186 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021187.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957966 78964527 + MGP_C57BL6NJ_P0021187 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021188.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957967 78965530 + MGP_C57BL6NJ_P0021188 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021189.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957981 78965624 + MGP_C57BL6NJ_P0021189 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021190.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78957983 78963414 + MGP_C57BL6NJ_P0021190 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021191.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78958086 78965539 + MGP_C57BL6NJ_P0021191 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021192.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78958112 78960328 + MGP_C57BL6NJ_P0021192 Gmppa protein_coding protein_coding MGP_C57BL6NJ_T0021193.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78958941 78966043 + MGP_C57BL6NJ_P0021193 Gmppa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021194.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78965634 78966947 + Gmppa protein_coding retained_intron MGP_C57BL6NJ_T0021195.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78966180 78967188 + Gmppa protein_coding retained_intron MGP_C57BL6NJ_T0021196.1 MGP_C57BL6NJ_G0016578.1 mouse_genomes_project 1 78966238 78967194 + Gmppa protein_coding retained_intron MGP_C57BL6NJ_T0019518.1 MGP_C57BL6NJ_G0016269.1 mouse_genomes_project 1 19907715 19945801 + MGP_C57BL6NJ_P0019518 Khdc1b protein_coding protein_coding MGP_C57BL6NJ_T0022058.1 MGP_C57BL6NJ_G0016767.1 mouse_genomes_project 1 112048183 112121863 + MGP_C57BL6NJ_P0022058 Tnfrsf11a protein_coding protein_coding MGP_C57BL6NJ_T0022059.1 MGP_C57BL6NJ_G0016767.1 mouse_genomes_project 1 112048215 112084316 + Tnfrsf11a protein_coding retained_intron MGP_C57BL6NJ_T0022060.1 MGP_C57BL6NJ_G0016767.1 mouse_genomes_project 1 112091473 112098914 + Tnfrsf11a protein_coding retained_intron MGP_C57BL6NJ_T0003115.1 MGP_C57BL6NJ_G0002912.1 mouse_genomes_project 1 193298260 193301344 + H3f3aos antisense antisense MGP_C57BL6NJ_T0003116.1 MGP_C57BL6NJ_G0002912.1 mouse_genomes_project 1 193298268 193301173 + H3f3aos antisense antisense MGP_C57BL6NJ_T0000835.1 MGP_C57BL6NJ_G0000749.1 mouse_genomes_project 1 169237153 169240260 - TEC TEC MGP_C57BL6NJ_T0000890.1 MGP_C57BL6NJ_G0000804.1 mouse_genomes_project 1 190554747 190555341 - TEC TEC MGP_C57BL6NJ_T0000891.1 MGP_C57BL6NJ_G0000804.1 mouse_genomes_project 1 190554793 190555339 - TEC pseudogene MGP_C57BL6NJ_T0023760.1 MGP_C57BL6NJ_G0017124.1 mouse_genomes_project 1 181426044 181435027 + MGP_C57BL6NJ_P0023760 Ccdc190 protein_coding protein_coding MGP_C57BL6NJ_T0023761.1 MGP_C57BL6NJ_G0017124.1 mouse_genomes_project 1 181427325 181434787 + MGP_C57BL6NJ_P0023761 Ccdc190 protein_coding protein_coding MGP_C57BL6NJ_T0019404.1 MGP_C57BL6NJ_G0016238.1 mouse_genomes_project 1 12727512 12730157 - MGP_C57BL6NJ_P0019404 Msc protein_coding protein_coding MGP_C57BL6NJ_T0019405.1 MGP_C57BL6NJ_G0016238.1 mouse_genomes_project 1 12727912 12729520 - MGP_C57BL6NJ_P0019405 Msc protein_coding protein_coding MGP_C57BL6NJ_T0019406.1 MGP_C57BL6NJ_G0016238.1 mouse_genomes_project 1 12728101 12728832 - Msc protein_coding retained_intron MGP_C57BL6NJ_T0019407.1 MGP_C57BL6NJ_G0016238.1 mouse_genomes_project 1 12728933 12730159 - Msc protein_coding retained_intron MGP_C57BL6NJ_T0012516.1 MGP_C57BL6NJ_G0010561.1 mouse_genomes_project 1 127439393 127439913 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012300.1 MGP_C57BL6NJ_G0010345.1 mouse_genomes_project 1 50226956 50227967 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021823.1 MGP_C57BL6NJ_G0016718.1 mouse_genomes_project 1 97798203 97799212 + MGP_C57BL6NJ_P0021823 Olfr1410 protein_coding protein_coding MGP_C57BL6NJ_T0021824.1 MGP_C57BL6NJ_G0016718.1 mouse_genomes_project 1 97798203 97799172 + MGP_C57BL6NJ_P0021824 Olfr1410 protein_coding protein_coding MGP_C57BL6NJ_T0019201.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2232827 2333230 + MGP_C57BL6NJ_P0019201 Atp6v1h protein_coding protein_coding MGP_C57BL6NJ_T0019202.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243766 2333419 + MGP_C57BL6NJ_P0019202 Atp6v1h protein_coding protein_coding MGP_C57BL6NJ_T0019203.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243796 2259091 + MGP_C57BL6NJ_P0019203 Atp6v1h protein_coding protein_coding MGP_C57BL6NJ_T0019204.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243810 2316197 + Atp6v1h protein_coding retained_intron MGP_C57BL6NJ_T0019205.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243818 2247466 + Atp6v1h protein_coding retained_intron MGP_C57BL6NJ_T0019206.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243818 2259022 + MGP_C57BL6NJ_P0019206 Atp6v1h protein_coding protein_coding MGP_C57BL6NJ_T0019207.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243840 2333309 + MGP_C57BL6NJ_P0019207 Atp6v1h protein_coding protein_coding MGP_C57BL6NJ_T0019208.1 MGP_C57BL6NJ_G0016205.1 mouse_genomes_project 1 2243850 2263139 + Atp6v1h protein_coding retained_intron MGP_C57BL6NJ_T0003063.1 MGP_C57BL6NJ_G0002871.1 mouse_genomes_project 1 165653094 165654950 + Gm37622 antisense antisense MGP_C57BL6NJ_T0002992.1 MGP_C57BL6NJ_G0002817.1 mouse_genomes_project 1 90886396 90887261 - Gm28626 antisense antisense MGP_C57BL6NJ_T0012539.1 MGP_C57BL6NJ_G0010584.1 mouse_genomes_project 1 139897865 139898121 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020419.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60654059 60671991 + MGP_C57BL6NJ_P0020419 Nif3l1 protein_coding protein_coding MGP_C57BL6NJ_T0020420.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60654175 60690923 + MGP_C57BL6NJ_P0020420 Nif3l1 protein_coding protein_coding MGP_C57BL6NJ_T0020421.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60654536 60659416 + MGP_C57BL6NJ_P0020421 Nif3l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020422.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60654637 60656959 + MGP_C57BL6NJ_P0020422 Nif3l1 protein_coding protein_coding MGP_C57BL6NJ_T0020423.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60656539 60670801 + MGP_C57BL6NJ_P0020423 Nif3l1 protein_coding protein_coding MGP_C57BL6NJ_T0020424.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60658075 60666335 + Nif3l1 protein_coding retained_intron MGP_C57BL6NJ_T0020425.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60662170 60664762 + Nif3l1 protein_coding retained_intron MGP_C57BL6NJ_T0020426.1 MGP_C57BL6NJ_G0016443.1 mouse_genomes_project 1 60666219 60669919 + Nif3l1 protein_coding retained_intron MGP_C57BL6NJ_T0021854.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98136854 98150364 + MGP_C57BL6NJ_P0021854 Capn10 protein_coding protein_coding MGP_C57BL6NJ_T0021855.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98137244 98143456 + MGP_C57BL6NJ_P0021855 Capn10 protein_coding protein_coding MGP_C57BL6NJ_T0021856.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98137311 98150352 + MGP_C57BL6NJ_P0021856 Capn10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021857.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98142942 98147526 + MGP_C57BL6NJ_P0021857 Capn10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021858.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98145126 98146167 + Capn10 protein_coding retained_intron MGP_C57BL6NJ_T0021859.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98148975 98149378 + Capn10 protein_coding processed_transcript MGP_C57BL6NJ_T0021860.1 MGP_C57BL6NJ_G0016726.1 mouse_genomes_project 1 98149307 98150013 + Capn10 protein_coding retained_intron MGP_C57BL6NJ_T0021653.1 MGP_C57BL6NJ_G0016675.1 mouse_genomes_project 1 92929799 92996654 + MGP_C57BL6NJ_P0021653 Ugt1a5 protein_coding protein_coding MGP_C57BL6NJ_T0020498.1 MGP_C57BL6NJ_G0016456.1 mouse_genomes_project 1 61559501 61653737 + MGP_C57BL6NJ_P0020498 Cdk15 protein_coding protein_coding MGP_C57BL6NJ_T0020499.1 MGP_C57BL6NJ_G0016456.1 mouse_genomes_project 1 61559502 61653137 + MGP_C57BL6NJ_P0020499 Cdk15 protein_coding protein_coding MGP_C57BL6NJ_T0020500.1 MGP_C57BL6NJ_G0016456.1 mouse_genomes_project 1 61559723 61560474 + Cdk15 protein_coding processed_transcript MGP_C57BL6NJ_T0020501.1 MGP_C57BL6NJ_G0016456.1 mouse_genomes_project 1 61601625 61653216 + Cdk15 protein_coding processed_transcript MGP_C57BL6NJ_T0005844.1 MGP_C57BL6NJ_G0004915.1 mouse_genomes_project 1 36080519 36081341 + 4930535G08Rik lincRNA lincRNA MGP_C57BL6NJ_T0011502.1 MGP_C57BL6NJ_G0009587.1 mouse_genomes_project 1 51777448 51777580 - Gm27330 misc_RNA misc_RNA MGP_C57BL6NJ_T0100931.1 MGP_C57BL6NJ_G0038977.1 mouse_genomes_project 1 174073155 174073289 - Gm22671 snoRNA snoRNA MGP_C57BL6NJ_T0006148.1 MGP_C57BL6NJ_G0005148.1 mouse_genomes_project 1 178639746 178640445 + Gm2453 lincRNA lincRNA MGP_C57BL6NJ_T0006149.1 MGP_C57BL6NJ_G0005148.1 mouse_genomes_project 1 178640162 178644535 + Gm2453 lincRNA lincRNA MGP_C57BL6NJ_T0099610.1 MGP_C57BL6NJ_G0037656.1 mouse_genomes_project 1 92096098 92096193 - Gm23504 snRNA snRNA MGP_C57BL6NJ_T0023446.1 MGP_C57BL6NJ_G0017053.1 mouse_genomes_project 1 172049884 172073881 + MGP_C57BL6NJ_P0023446 Ankrd45 protein_coding protein_coding MGP_C57BL6NJ_T0023447.1 MGP_C57BL6NJ_G0017053.1 mouse_genomes_project 1 172049905 172081882 + MGP_C57BL6NJ_P0023447 Ankrd45 protein_coding protein_coding MGP_C57BL6NJ_T0023448.1 MGP_C57BL6NJ_G0017053.1 mouse_genomes_project 1 172049916 172079198 + MGP_C57BL6NJ_P0023448 Ankrd45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023449.1 MGP_C57BL6NJ_G0017053.1 mouse_genomes_project 1 172049933 172074800 + MGP_C57BL6NJ_P0023449 Ankrd45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023450.1 MGP_C57BL6NJ_G0017053.1 mouse_genomes_project 1 172049960 172074777 + MGP_C57BL6NJ_P0023450 Ankrd45 protein_coding protein_coding MGP_C57BL6NJ_T0024586.1 MGP_C57BL6NJ_G0017324.1 mouse_genomes_project 1 200643921 201117583 + MGP_C57BL6NJ_P0024586 Esrrg protein_coding protein_coding MGP_C57BL6NJ_T0024587.1 MGP_C57BL6NJ_G0017324.1 mouse_genomes_project 1 200644159 201306364 + MGP_C57BL6NJ_P0024587 Esrrg protein_coding protein_coding MGP_C57BL6NJ_T0024588.1 MGP_C57BL6NJ_G0017324.1 mouse_genomes_project 1 200644826 200839013 + Esrrg protein_coding processed_transcript MGP_C57BL6NJ_T0024589.1 MGP_C57BL6NJ_G0017324.1 mouse_genomes_project 1 201064803 201306863 + MGP_C57BL6NJ_P0024589 Esrrg protein_coding protein_coding MGP_C57BL6NJ_T0024590.1 MGP_C57BL6NJ_G0017324.1 mouse_genomes_project 1 201064844 201306862 + MGP_C57BL6NJ_P0024590 Esrrg protein_coding protein_coding MGP_C57BL6NJ_T0024533.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198045311 198139315 + MGP_C57BL6NJ_P0024533 Rab3gap2 protein_coding protein_coding MGP_C57BL6NJ_T0024534.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198045311 198141889 + MGP_C57BL6NJ_P0024534 Rab3gap2 protein_coding protein_coding MGP_C57BL6NJ_T0024535.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198045372 198047658 + Rab3gap2 protein_coding retained_intron MGP_C57BL6NJ_T0024536.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198117342 198141874 + Rab3gap2 protein_coding retained_intron MGP_C57BL6NJ_T0024537.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198117505 198139853 + Rab3gap2 protein_coding retained_intron MGP_C57BL6NJ_T0024538.1 MGP_C57BL6NJ_G0017313.1 mouse_genomes_project 1 198132927 198136825 + Rab3gap2 protein_coding retained_intron MGP_C57BL6NJ_T0006031.1 MGP_C57BL6NJ_G0005055.1 mouse_genomes_project 1 124876407 125355889 + lincRNA lincRNA MGP_C57BL6NJ_T0020502.1 MGP_C57BL6NJ_G0016457.1 mouse_genomes_project 1 61792436 61796968 + MGP_C57BL6NJ_P0020502 Fzd7 protein_coding protein_coding MGP_C57BL6NJ_T0012636.1 MGP_C57BL6NJ_G0010681.1 mouse_genomes_project 1 183846677 183847007 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100932.1 MGP_C57BL6NJ_G0038978.1 mouse_genomes_project 1 174151553 174151675 + Gm22434 snoRNA snoRNA MGP_C57BL6NJ_T0009713.1 MGP_C57BL6NJ_G0007798.1 mouse_genomes_project 1 104304131 104304241 + Gm26134 miRNA miRNA MGP_C57BL6NJ_T0024641.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204244542 204266879 + MGP_C57BL6NJ_P0024641 Angel2 protein_coding protein_coding MGP_C57BL6NJ_T0024642.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204247922 204258359 + Angel2 protein_coding retained_intron MGP_C57BL6NJ_T0024643.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204247922 204266879 + MGP_C57BL6NJ_P0024643 Angel2 protein_coding protein_coding MGP_C57BL6NJ_T0024644.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204247922 204266879 + MGP_C57BL6NJ_P0024644 Angel2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024645.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204247922 204266879 + MGP_C57BL6NJ_P0024645 Angel2 protein_coding protein_coding MGP_C57BL6NJ_T0024646.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204248844 204257929 + Angel2 protein_coding retained_intron MGP_C57BL6NJ_T0024647.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204252790 204257401 + MGP_C57BL6NJ_P0024647 Angel2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024648.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204257175 204259193 + Angel2 protein_coding retained_intron MGP_C57BL6NJ_T0024649.1 MGP_C57BL6NJ_G0017333.1 mouse_genomes_project 1 204257367 204266879 + Angel2 protein_coding processed_transcript MGP_C57BL6NJ_T0024831.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208691086 208732026 - MGP_C57BL6NJ_P0024831 Cr2 protein_coding protein_coding MGP_C57BL6NJ_T0024832.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208691086 208732025 - MGP_C57BL6NJ_P0024832 Cr2 protein_coding protein_coding MGP_C57BL6NJ_T0024833.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208691092 208714369 - MGP_C57BL6NJ_P0024833 Cr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024834.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208693594 208708854 - Cr2 protein_coding retained_intron MGP_C57BL6NJ_T0024835.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208693944 208706207 - MGP_C57BL6NJ_P0024835 Cr2 protein_coding protein_coding MGP_C57BL6NJ_T0024836.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208693964 208731958 - MGP_C57BL6NJ_P0024836 Cr2 protein_coding protein_coding MGP_C57BL6NJ_T0024837.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208695037 208708945 - Cr2 protein_coding retained_intron MGP_C57BL6NJ_T0024838.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208702303 208731920 - MGP_C57BL6NJ_P0024838 Cr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024839.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208718507 208723727 - Cr2 protein_coding processed_transcript MGP_C57BL6NJ_T0024840.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208721054 208726478 - MGP_C57BL6NJ_P0024840 Cr2 protein_coding protein_coding MGP_C57BL6NJ_T0024841.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208721141 208732025 - Cr2 protein_coding processed_transcript MGP_C57BL6NJ_T0024842.1 MGP_C57BL6NJ_G0017369.1 mouse_genomes_project 1 208725954 208732025 - Cr2 protein_coding processed_transcript MGP_C57BL6NJ_T0002921.1 MGP_C57BL6NJ_G0002764.1 mouse_genomes_project 1 34746540 34749089 - Gm38336 antisense antisense MGP_C57BL6NJ_T0002923.1 MGP_C57BL6NJ_G0002766.1 mouse_genomes_project 1 36652187 36652891 - Gm38033 antisense antisense MGP_C57BL6NJ_T0099643.1 MGP_C57BL6NJ_G0037689.1 mouse_genomes_project 1 177062875 177062982 - Gm23402 snRNA snRNA MGP_C57BL6NJ_T0020990.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78123080 78132370 - MGP_C57BL6NJ_P0020990 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0020991.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78123080 78132345 - MGP_C57BL6NJ_P0020991 Rnf25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020992.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78123085 78132350 - MGP_C57BL6NJ_P0020992 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0020993.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78123554 78124134 - Rnf25 protein_coding retained_intron MGP_C57BL6NJ_T0020994.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78124541 78131537 - MGP_C57BL6NJ_P0020994 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0020995.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78125217 78131572 - MGP_C57BL6NJ_P0020995 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0020996.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78129335 78132318 - MGP_C57BL6NJ_P0020996 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0020997.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78129522 78132367 - Rnf25 protein_coding retained_intron MGP_C57BL6NJ_T0020998.1 MGP_C57BL6NJ_G0016548.1 mouse_genomes_project 1 78129705 78132338 - MGP_C57BL6NJ_P0020998 Rnf25 protein_coding protein_coding MGP_C57BL6NJ_T0000818.1 MGP_C57BL6NJ_G0000732.1 mouse_genomes_project 1 164226907 164229464 - TEC TEC MGP_C57BL6NJ_T0005976.1 MGP_C57BL6NJ_G0005007.1 mouse_genomes_project 1 90288943 90298345 + 9930111H07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006181.1 MGP_C57BL6NJ_G0005174.1 mouse_genomes_project 1 196476528 196542959 + Gm34068 lincRNA lincRNA MGP_C57BL6NJ_T0012514.1 MGP_C57BL6NJ_G0010559.1 mouse_genomes_project 1 127321712 127321942 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020553.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62479018 62534086 + MGP_C57BL6NJ_P0020553 Carf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020554.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62479035 62489761 + Carf protein_coding retained_intron MGP_C57BL6NJ_T0020555.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62479035 62506763 + MGP_C57BL6NJ_P0020555 Carf protein_coding protein_coding MGP_C57BL6NJ_T0020556.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62481967 62485180 + Carf protein_coding retained_intron MGP_C57BL6NJ_T0020557.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62486043 62537014 + MGP_C57BL6NJ_P0020557 Carf protein_coding protein_coding MGP_C57BL6NJ_T0020558.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62488780 62533783 + MGP_C57BL6NJ_P0020558 Carf protein_coding protein_coding MGP_C57BL6NJ_T0020559.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62488801 62533854 + MGP_C57BL6NJ_P0020559 Carf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020560.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62488801 62533854 + MGP_C57BL6NJ_P0020560 Carf protein_coding protein_coding MGP_C57BL6NJ_T0020561.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62522943 62525361 + Carf protein_coding retained_intron MGP_C57BL6NJ_T0020562.1 MGP_C57BL6NJ_G0016465.1 mouse_genomes_project 1 62524597 62531081 + MGP_C57BL6NJ_P0020562 Carf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024148.1 MGP_C57BL6NJ_G0017229.1 mouse_genomes_project 1 186430461 186432807 + MGP_C57BL6NJ_P0024148 protein_coding protein_coding MGP_C57BL6NJ_T0006225.1 MGP_C57BL6NJ_G0005207.1 mouse_genomes_project 1 208537876 208544160 - Gm32250 lincRNA lincRNA MGP_C57BL6NJ_T0022377.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139069607 139094995 - MGP_C57BL6NJ_P0022377 protein_coding protein_coding MGP_C57BL6NJ_T0022378.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139069614 139072671 - protein_coding retained_intron MGP_C57BL6NJ_T0022379.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139070703 139110456 - MGP_C57BL6NJ_P0022379 protein_coding protein_coding MGP_C57BL6NJ_T0022380.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139071440 139094996 - MGP_C57BL6NJ_P0022380 protein_coding protein_coding MGP_C57BL6NJ_T0022381.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139071440 139094996 - MGP_C57BL6NJ_P0022381 protein_coding protein_coding MGP_C57BL6NJ_T0022382.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139078122 139094995 - MGP_C57BL6NJ_P0022382 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022383.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139078122 139094995 - MGP_C57BL6NJ_P0022383 protein_coding protein_coding MGP_C57BL6NJ_T0022384.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139078122 139094995 - MGP_C57BL6NJ_P0022384 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022385.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139078310 139096253 - MGP_C57BL6NJ_P0022385 protein_coding protein_coding MGP_C57BL6NJ_T0022386.1 MGP_C57BL6NJ_G0016842.1 mouse_genomes_project 1 139087999 139097679 - MGP_C57BL6NJ_P0022386 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024171.1 MGP_C57BL6NJ_G0017238.1 mouse_genomes_project 1 187696136 187722344 - MGP_C57BL6NJ_P0024171 Fh1 protein_coding protein_coding MGP_C57BL6NJ_T0024172.1 MGP_C57BL6NJ_G0017238.1 mouse_genomes_project 1 187697138 187700040 - Fh1 protein_coding retained_intron MGP_C57BL6NJ_T0024173.1 MGP_C57BL6NJ_G0017238.1 mouse_genomes_project 1 187697140 187702402 - Fh1 protein_coding retained_intron MGP_C57BL6NJ_T0024174.1 MGP_C57BL6NJ_G0017238.1 mouse_genomes_project 1 187697146 187705468 - MGP_C57BL6NJ_P0024174 Fh1 protein_coding protein_coding MGP_C57BL6NJ_T0024175.1 MGP_C57BL6NJ_G0017238.1 mouse_genomes_project 1 187711484 187722282 - MGP_C57BL6NJ_P0024175 Fh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099592.1 MGP_C57BL6NJ_G0037638.1 mouse_genomes_project 1 60675259 60675366 - Gm23966 snRNA snRNA MGP_C57BL6NJ_T0020604.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138229 64608448 + Pard3b protein_coding processed_transcript MGP_C57BL6NJ_T0020605.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138229 65170381 + MGP_C57BL6NJ_P0020605 Pard3b protein_coding protein_coding MGP_C57BL6NJ_T0020606.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138280 64275761 + Pard3b protein_coding retained_intron MGP_C57BL6NJ_T0020607.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138291 64700096 + Pard3b protein_coding retained_intron MGP_C57BL6NJ_T0020608.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138648 65166020 + MGP_C57BL6NJ_P0020608 Pard3b protein_coding protein_coding MGP_C57BL6NJ_T0020609.1 MGP_C57BL6NJ_G0016473.1 mouse_genomes_project 1 64138648 65170381 + MGP_C57BL6NJ_P0020609 Pard3b protein_coding protein_coding MGP_C57BL6NJ_T0012478.1 MGP_C57BL6NJ_G0010523.1 mouse_genomes_project 1 114394579 114394765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017492.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143868709 143869649 - Ptprv processed_transcript retained_intron MGP_C57BL6NJ_T0017493.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143868710 143895272 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017494.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143868712 143869521 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017495.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143868841 143869802 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017496.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143870228 143870677 - Ptprv processed_transcript retained_intron MGP_C57BL6NJ_T0017497.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143870487 143871759 - Ptprv processed_transcript retained_intron MGP_C57BL6NJ_T0017498.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143871381 143873655 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017499.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143889119 143895246 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017500.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143889137 143891024 - Ptprv processed_transcript retained_intron MGP_C57BL6NJ_T0017501.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143892221 143893841 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0017502.1 MGP_C57BL6NJ_G0015505.1 mouse_genomes_project 1 143892330 143895221 - Ptprv processed_transcript processed_transcript MGP_C57BL6NJ_T0000526.1 MGP_C57BL6NJ_G0000445.1 mouse_genomes_project 1 18499368 18502800 - TEC TEC MGP_C57BL6NJ_T0009673.1 MGP_C57BL6NJ_G0007758.1 mouse_genomes_project 1 44671658 44671768 - Gm24180 miRNA miRNA MGP_C57BL6NJ_T0012193.1 MGP_C57BL6NJ_G0010238.1 mouse_genomes_project 1 17035996 17036905 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098929.1 MGP_C57BL6NJ_G0036993.1 mouse_genomes_project 1 90187526 90187630 + n-R5s215 rRNA rRNA MGP_C57BL6NJ_T0000871.1 MGP_C57BL6NJ_G0000785.1 mouse_genomes_project 1 183407661 183409364 + TEC TEC MGP_C57BL6NJ_T0000613.1 MGP_C57BL6NJ_G0000529.1 mouse_genomes_project 1 62255125 62255846 - TEC TEC MGP_C57BL6NJ_T0098943.1 MGP_C57BL6NJ_G0037007.1 mouse_genomes_project 1 199035183 199035289 + Gm23821 rRNA rRNA MGP_C57BL6NJ_T0000591.1 MGP_C57BL6NJ_G0000507.1 mouse_genomes_project 1 44219272 44221763 + TEC TEC MGP_C57BL6NJ_T0005812.1 MGP_C57BL6NJ_G0004886.1 mouse_genomes_project 1 10488654 10489507 - Gm29663 lincRNA lincRNA MGP_C57BL6NJ_T0000596.1 MGP_C57BL6NJ_G0000512.1 mouse_genomes_project 1 48728251 48730193 - TEC TEC MGP_C57BL6NJ_T0012421.1 MGP_C57BL6NJ_G0010466.1 mouse_genomes_project 1 92213715 92214772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024821.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208650603 208685381 - MGP_C57BL6NJ_P0024821 Cr1l protein_coding protein_coding MGP_C57BL6NJ_T0024822.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208651880 208685360 - MGP_C57BL6NJ_P0024822 Cr1l protein_coding protein_coding MGP_C57BL6NJ_T0024823.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208657735 208661433 - Cr1l protein_coding retained_intron MGP_C57BL6NJ_T0024824.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208657831 208685598 - MGP_C57BL6NJ_P0024824 Cr1l protein_coding protein_coding MGP_C57BL6NJ_T0024825.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208657837 208671678 - MGP_C57BL6NJ_P0024825 Cr1l protein_coding protein_coding MGP_C57BL6NJ_T0024826.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208668691 208683499 - Cr1l protein_coding retained_intron MGP_C57BL6NJ_T0024827.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208668818 208685623 - MGP_C57BL6NJ_P0024827 Cr1l protein_coding protein_coding MGP_C57BL6NJ_T0024828.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208679951 208685571 - Cr1l protein_coding retained_intron MGP_C57BL6NJ_T0024829.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208683230 208685367 - MGP_C57BL6NJ_P0024829 Cr1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024830.1 MGP_C57BL6NJ_G0017368.1 mouse_genomes_project 1 208683682 208685392 - Cr1l protein_coding retained_intron MGP_C57BL6NJ_T0022229.1 MGP_C57BL6NJ_G0016811.1 mouse_genomes_project 1 127954080 127984413 - MGP_C57BL6NJ_P0022229 Marco protein_coding protein_coding MGP_C57BL6NJ_T0022230.1 MGP_C57BL6NJ_G0016811.1 mouse_genomes_project 1 127970303 127984145 - MGP_C57BL6NJ_P0022230 Marco protein_coding protein_coding MGP_C57BL6NJ_T0000483.1 MGP_C57BL6NJ_G0000402.1 mouse_genomes_project 1 547166 549223 - TEC TEC MGP_C57BL6NJ_T0021952.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99014874 99043001 + MGP_C57BL6NJ_P0021952 Atg4b protein_coding protein_coding MGP_C57BL6NJ_T0021953.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99020924 99059421 + MGP_C57BL6NJ_P0021953 Atg4b protein_coding protein_coding MGP_C57BL6NJ_T0021954.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99021007 99045606 + MGP_C57BL6NJ_P0021954 Atg4b protein_coding protein_coding MGP_C57BL6NJ_T0021955.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99021054 99053731 + MGP_C57BL6NJ_P0021955 Atg4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021956.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99021064 99056990 + Atg4b protein_coding retained_intron MGP_C57BL6NJ_T0021957.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99021181 99034826 + Atg4b protein_coding processed_transcript MGP_C57BL6NJ_T0021958.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99034802 99042766 + Atg4b protein_coding retained_intron MGP_C57BL6NJ_T0021959.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99053150 99053892 + Atg4b protein_coding retained_intron MGP_C57BL6NJ_T0021960.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99053604 99056688 + MGP_C57BL6NJ_P0021960 Atg4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021961.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99054393 99055391 + Atg4b protein_coding retained_intron MGP_C57BL6NJ_T0021962.1 MGP_C57BL6NJ_G0016744.1 mouse_genomes_project 1 99055028 99056710 + Atg4b protein_coding retained_intron MGP_C57BL6NJ_T0022124.1 MGP_C57BL6NJ_G0016788.1 mouse_genomes_project 1 123906270 123929426 + MGP_C57BL6NJ_P0022124 Gm19965 protein_coding protein_coding MGP_C57BL6NJ_T0005927.1 MGP_C57BL6NJ_G0004972.1 mouse_genomes_project 1 70128047 70214659 + Gm15668 lincRNA lincRNA MGP_C57BL6NJ_T0000733.1 MGP_C57BL6NJ_G0000649.1 mouse_genomes_project 1 131325535 131328874 - TEC TEC MGP_C57BL6NJ_T0020432.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60738608 60804026 - MGP_C57BL6NJ_P0020432 Fam126b protein_coding protein_coding MGP_C57BL6NJ_T0020433.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60742817 60803969 - MGP_C57BL6NJ_P0020433 Fam126b protein_coding protein_coding MGP_C57BL6NJ_T0020434.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60743542 60781185 - MGP_C57BL6NJ_P0020434 Fam126b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020435.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60744882 60802227 - MGP_C57BL6NJ_P0020435 Fam126b protein_coding protein_coding MGP_C57BL6NJ_T0020436.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60768017 60803978 - MGP_C57BL6NJ_P0020436 Fam126b protein_coding protein_coding MGP_C57BL6NJ_T0020437.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60773163 60803967 - Fam126b protein_coding processed_transcript MGP_C57BL6NJ_T0020438.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60773190 60803980 - Fam126b protein_coding retained_intron MGP_C57BL6NJ_T0020439.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60777661 60780451 - Fam126b protein_coding retained_intron MGP_C57BL6NJ_T0020440.1 MGP_C57BL6NJ_G0016445.1 mouse_genomes_project 1 60780834 60804000 - Fam126b protein_coding retained_intron MGP_C57BL6NJ_T0020545.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62442113 62478680 - MGP_C57BL6NJ_P0020545 Wdr12 protein_coding protein_coding MGP_C57BL6NJ_T0020546.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62455561 62479417 - MGP_C57BL6NJ_P0020546 Wdr12 protein_coding protein_coding MGP_C57BL6NJ_T0020547.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62455561 62478918 - MGP_C57BL6NJ_P0020547 Wdr12 protein_coding protein_coding MGP_C57BL6NJ_T0020548.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62461748 62464428 - Wdr12 protein_coding retained_intron MGP_C57BL6NJ_T0020549.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62462458 62464605 - Wdr12 protein_coding processed_transcript MGP_C57BL6NJ_T0020550.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62466706 62478907 - MGP_C57BL6NJ_P0020550 Wdr12 protein_coding protein_coding MGP_C57BL6NJ_T0020551.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62466706 62478897 - MGP_C57BL6NJ_P0020551 Wdr12 protein_coding protein_coding MGP_C57BL6NJ_T0020552.1 MGP_C57BL6NJ_G0016464.1 mouse_genomes_project 1 62472663 62478469 - Wdr12 protein_coding retained_intron MGP_C57BL6NJ_T0012646.1 MGP_C57BL6NJ_G0010691.1 mouse_genomes_project 1 193189122 193189600 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006108.1 MGP_C57BL6NJ_G0005117.1 mouse_genomes_project 1 164618783 164628845 - 4930452N14Rik lincRNA lincRNA MGP_C57BL6NJ_T0100859.1 MGP_C57BL6NJ_G0038905.1 mouse_genomes_project 1 35168349 35168478 - Gm25096 snoRNA snoRNA MGP_C57BL6NJ_T0000817.1 MGP_C57BL6NJ_G0000731.1 mouse_genomes_project 1 164034039 164035955 + TEC TEC MGP_C57BL6NJ_T0003042.1 MGP_C57BL6NJ_G0002854.1 mouse_genomes_project 1 143869173 143874727 + Gm10535 antisense antisense MGP_C57BL6NJ_T0012348.1 MGP_C57BL6NJ_G0010393.1 mouse_genomes_project 1 63676600 63677302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009658.1 MGP_C57BL6NJ_G0007743.1 mouse_genomes_project 1 19170286 19170405 + Mir133b miRNA miRNA MGP_C57BL6NJ_T0000912.1 MGP_C57BL6NJ_G0000824.1 mouse_genomes_project 1 199024163 199024356 - TEC TEC MGP_C57BL6NJ_T0019683.1 MGP_C57BL6NJ_G0016301.1 mouse_genomes_project 1 34389005 34394451 + MGP_C57BL6NJ_P0019683 Prss39 protein_coding protein_coding MGP_C57BL6NJ_T0019684.1 MGP_C57BL6NJ_G0016301.1 mouse_genomes_project 1 34389016 34390728 + MGP_C57BL6NJ_P0019684 Prss39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017438.1 MGP_C57BL6NJ_G0015482.1 mouse_genomes_project 1 7127155 7201642 - 2610203C22Rik processed_transcript antisense MGP_C57BL6NJ_T0017439.1 MGP_C57BL6NJ_G0015482.1 mouse_genomes_project 1 7129610 7201687 - 2610203C22Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017440.1 MGP_C57BL6NJ_G0015482.1 mouse_genomes_project 1 7168258 7201694 - 2610203C22Rik processed_transcript antisense MGP_C57BL6NJ_T0017441.1 MGP_C57BL6NJ_G0015482.1 mouse_genomes_project 1 7168863 7201725 - 2610203C22Rik processed_transcript antisense MGP_C57BL6NJ_T0017442.1 MGP_C57BL6NJ_G0015482.1 mouse_genomes_project 1 7171280 7201714 - 2610203C22Rik processed_transcript antisense MGP_C57BL6NJ_T0003062.1 MGP_C57BL6NJ_G0002870.1 mouse_genomes_project 1 164063414 164070059 - Gm28513 antisense antisense MGP_C57BL6NJ_T0024670.1 MGP_C57BL6NJ_G0017338.1 mouse_genomes_project 1 204395035 204407230 + MGP_C57BL6NJ_P0024670 Nsl1 protein_coding protein_coding MGP_C57BL6NJ_T0024671.1 MGP_C57BL6NJ_G0017338.1 mouse_genomes_project 1 204395047 204408963 + MGP_C57BL6NJ_P0024671 Nsl1 protein_coding protein_coding MGP_C57BL6NJ_T0024672.1 MGP_C57BL6NJ_G0017338.1 mouse_genomes_project 1 204395054 204420587 + MGP_C57BL6NJ_P0024672 Nsl1 protein_coding protein_coding MGP_C57BL6NJ_T0024147.1 MGP_C57BL6NJ_G0017228.1 mouse_genomes_project 1 186354676 186355764 - MGP_C57BL6NJ_P0024147 Olfr419 protein_coding protein_coding MGP_C57BL6NJ_T0019883.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38232209 38244645 - MGP_C57BL6NJ_P0019883 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019884.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38234414 38245223 - MGP_C57BL6NJ_P0019884 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019885.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38234414 38244573 - MGP_C57BL6NJ_P0019885 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019886.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38234416 38244554 - Txndc9 protein_coding retained_intron MGP_C57BL6NJ_T0019887.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38234660 38243175 - MGP_C57BL6NJ_P0019887 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019888.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38234663 38244946 - MGP_C57BL6NJ_P0019888 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019889.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38237278 38243988 - MGP_C57BL6NJ_P0019889 Txndc9 protein_coding protein_coding MGP_C57BL6NJ_T0019890.1 MGP_C57BL6NJ_G0016338.1 mouse_genomes_project 1 38243244 38244592 - Txndc9 protein_coding retained_intron MGP_C57BL6NJ_T0005947.1 MGP_C57BL6NJ_G0004986.1 mouse_genomes_project 1 76959947 76963436 - C530043A13Rik lincRNA lincRNA MGP_C57BL6NJ_T0005948.1 MGP_C57BL6NJ_G0004986.1 mouse_genomes_project 1 76959949 76963269 - C530043A13Rik lincRNA lincRNA MGP_C57BL6NJ_T0005949.1 MGP_C57BL6NJ_G0004986.1 mouse_genomes_project 1 76961009 76967599 - C530043A13Rik lincRNA lincRNA MGP_C57BL6NJ_T0003125.1 MGP_C57BL6NJ_G0002920.1 mouse_genomes_project 1 199950407 199956064 - antisense antisense MGP_C57BL6NJ_T0023840.1 MGP_C57BL6NJ_G0017146.1 mouse_genomes_project 1 182833507 182857637 - MGP_C57BL6NJ_P0023840 Pcp4l1 protein_coding protein_coding MGP_C57BL6NJ_T0024391.1 MGP_C57BL6NJ_G0017281.1 mouse_genomes_project 1 193635023 193644450 + MGP_C57BL6NJ_P0024391 9130409I23Rik protein_coding protein_coding MGP_C57BL6NJ_T0002984.1 MGP_C57BL6NJ_G0002810.1 mouse_genomes_project 1 78790467 78793515 + Gm28902 antisense antisense MGP_C57BL6NJ_T0023541.1 MGP_C57BL6NJ_G0017070.1 mouse_genomes_project 1 173925077 173952483 - MGP_C57BL6NJ_P0023541 Fmo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023542.1 MGP_C57BL6NJ_G0017070.1 mouse_genomes_project 1 173925249 173952186 - MGP_C57BL6NJ_P0023542 Fmo6 protein_coding protein_coding MGP_C57BL6NJ_T0019917.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39154919 39194226 - MGP_C57BL6NJ_P0019917 Chst10 protein_coding protein_coding MGP_C57BL6NJ_T0019918.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39154919 39194147 - MGP_C57BL6NJ_P0019918 Chst10 protein_coding protein_coding MGP_C57BL6NJ_T0019919.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39154927 39166313 - MGP_C57BL6NJ_P0019919 Chst10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019920.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39154929 39194298 - MGP_C57BL6NJ_P0019920 Chst10 protein_coding protein_coding MGP_C57BL6NJ_T0019921.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39164695 39194290 - MGP_C57BL6NJ_P0019921 Chst10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019922.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39168501 39194271 - MGP_C57BL6NJ_P0019922 Chst10 protein_coding protein_coding MGP_C57BL6NJ_T0019923.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39186768 39194123 - Chst10 protein_coding retained_intron MGP_C57BL6NJ_T0019924.1 MGP_C57BL6NJ_G0016343.1 mouse_genomes_project 1 39186769 39194147 - Chst10 protein_coding retained_intron MGP_C57BL6NJ_T0012460.1 MGP_C57BL6NJ_G0010505.1 mouse_genomes_project 1 107739825 107740555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019992.1 MGP_C57BL6NJ_G0016360.1 mouse_genomes_project 1 40926775 40964159 + MGP_C57BL6NJ_P0019992 Il18rap protein_coding protein_coding MGP_C57BL6NJ_T0019993.1 MGP_C57BL6NJ_G0016360.1 mouse_genomes_project 1 40926818 40948954 + Il18rap protein_coding retained_intron MGP_C57BL6NJ_T0019994.1 MGP_C57BL6NJ_G0016360.1 mouse_genomes_project 1 40926861 40936414 + Il18rap protein_coding retained_intron MGP_C57BL6NJ_T0019995.1 MGP_C57BL6NJ_G0016360.1 mouse_genomes_project 1 40951160 40960357 + Il18rap protein_coding retained_intron MGP_C57BL6NJ_T0023213.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166008585 166024042 + MGP_C57BL6NJ_P0023213 Acbd6 protein_coding protein_coding MGP_C57BL6NJ_T0023214.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166008587 166144467 + MGP_C57BL6NJ_P0023214 Acbd6 protein_coding protein_coding MGP_C57BL6NJ_T0023215.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166008591 166039552 + MGP_C57BL6NJ_P0023215 Acbd6 protein_coding protein_coding MGP_C57BL6NJ_T0023216.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166013582 166140246 + Acbd6 protein_coding processed_transcript MGP_C57BL6NJ_T0023217.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166017715 166024013 + Acbd6 protein_coding retained_intron MGP_C57BL6NJ_T0023218.1 MGP_C57BL6NJ_G0017017.1 mouse_genomes_project 1 166140141 166141508 + MGP_C57BL6NJ_P0023218 Acbd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020141.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53127455 53139945 - MGP_C57BL6NJ_P0020141 Nabp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020142.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53127600 53139613 - MGP_C57BL6NJ_P0020142 Nabp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020143.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53131450 53139945 - MGP_C57BL6NJ_P0020143 Nabp1 protein_coding protein_coding MGP_C57BL6NJ_T0020144.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53132838 53139461 - MGP_C57BL6NJ_P0020144 Nabp1 protein_coding protein_coding MGP_C57BL6NJ_T0020145.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53132932 53134956 - Nabp1 protein_coding retained_intron MGP_C57BL6NJ_T0020146.1 MGP_C57BL6NJ_G0016393.1 mouse_genomes_project 1 53137137 53139945 - Nabp1 protein_coding retained_intron MGP_C57BL6NJ_T0100892.1 MGP_C57BL6NJ_G0038938.1 mouse_genomes_project 1 106125842 106125974 - Gm23602 snoRNA snoRNA MGP_C57BL6NJ_T0012543.1 MGP_C57BL6NJ_G0010588.1 mouse_genomes_project 1 144006704 144007705 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012324.1 MGP_C57BL6NJ_G0010369.1 mouse_genomes_project 1 57379396 57379744 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005912.1 MGP_C57BL6NJ_G0004961.1 mouse_genomes_project 1 63963690 63964768 + Gm28449 lincRNA lincRNA MGP_C57BL6NJ_T0000566.1 MGP_C57BL6NJ_G0000482.1 mouse_genomes_project 1 33513814 33516128 - TEC TEC MGP_C57BL6NJ_T0006156.1 MGP_C57BL6NJ_G0005155.1 mouse_genomes_project 1 187664894 187668844 + Gm36307 lincRNA lincRNA MGP_C57BL6NJ_T0022659.1 MGP_C57BL6NJ_G0016906.1 mouse_genomes_project 1 142970310 142972870 + MGP_C57BL6NJ_P0022659 Myog protein_coding protein_coding MGP_C57BL6NJ_T0023739.1 MGP_C57BL6NJ_G0017117.1 mouse_genomes_project 1 178800543 178821461 - MGP_C57BL6NJ_P0023739 Lrrc52 protein_coding protein_coding MGP_C57BL6NJ_T0006040.1 MGP_C57BL6NJ_G0005062.1 mouse_genomes_project 1 127911922 127914573 + 1700012E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0017548.1 MGP_C57BL6NJ_G0015517.1 mouse_genomes_project 1 182443129 182463566 + Gm9929 processed_transcript processed_transcript MGP_C57BL6NJ_T0000560.1 MGP_C57BL6NJ_G0000477.1 mouse_genomes_project 1 32271379 32275066 + TEC TEC MGP_C57BL6NJ_T0000842.1 MGP_C57BL6NJ_G0000756.1 mouse_genomes_project 1 171426340 171427599 - TEC TEC MGP_C57BL6NJ_T0012620.1 MGP_C57BL6NJ_G0010665.1 mouse_genomes_project 1 177315988 177316341 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102632.1 MGP_C57BL6NJ_G0040427.1 mouse_genomes_project 1 16486192 16498839 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000882.1 MGP_C57BL6NJ_G0000796.1 mouse_genomes_project 1 189164723 189166757 + TEC TEC MGP_C57BL6NJ_T0023974.1 MGP_C57BL6NJ_G0017174.1 mouse_genomes_project 1 183624815 183627343 + MGP_C57BL6NJ_P0023974 Gm10521 protein_coding protein_coding MGP_C57BL6NJ_T0002895.1 MGP_C57BL6NJ_G0002747.1 mouse_genomes_project 1 7330566 7380792 + 1700034P13Rik antisense antisense MGP_C57BL6NJ_T0002896.1 MGP_C57BL6NJ_G0002747.1 mouse_genomes_project 1 7330874 7379345 + 1700034P13Rik antisense antisense MGP_C57BL6NJ_T0002897.1 MGP_C57BL6NJ_G0002747.1 mouse_genomes_project 1 7331399 7356772 + 1700034P13Rik antisense antisense MGP_C57BL6NJ_T0002898.1 MGP_C57BL6NJ_G0002747.1 mouse_genomes_project 1 7331505 7356611 + 1700034P13Rik antisense antisense MGP_C57BL6NJ_T0006224.1 MGP_C57BL6NJ_G0005206.1 mouse_genomes_project 1 207713069 207723642 - 4930503O07Rik lincRNA lincRNA MGP_C57BL6NJ_T0023076.1 MGP_C57BL6NJ_G0016988.1 mouse_genomes_project 1 162018791 162277143 - MGP_C57BL6NJ_P0023076 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023077.1 MGP_C57BL6NJ_G0016988.1 mouse_genomes_project 1 162057479 162277298 - MGP_C57BL6NJ_P0023077 1700025G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0023078.1 MGP_C57BL6NJ_G0016988.1 mouse_genomes_project 1 162065837 162097093 - 1700025G04Rik protein_coding retained_intron MGP_C57BL6NJ_T0023079.1 MGP_C57BL6NJ_G0016988.1 mouse_genomes_project 1 162066171 162240355 - MGP_C57BL6NJ_P0023079 1700025G04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024286.1 MGP_C57BL6NJ_G0017262.1 mouse_genomes_project 1 192089485 192160543 - MGP_C57BL6NJ_P0024286 Gm1305 protein_coding protein_coding MGP_C57BL6NJ_T0012647.1 MGP_C57BL6NJ_G0010692.1 mouse_genomes_project 1 193366307 193366756 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019473.1 MGP_C57BL6NJ_G0016254.1 mouse_genomes_project 1 15970111 16008626 + MGP_C57BL6NJ_P0019473 Crispld1 protein_coding protein_coding MGP_C57BL6NJ_T0019474.1 MGP_C57BL6NJ_G0016254.1 mouse_genomes_project 1 15970125 15988935 + MGP_C57BL6NJ_P0019474 Crispld1 protein_coding protein_coding MGP_C57BL6NJ_T0019475.1 MGP_C57BL6NJ_G0016254.1 mouse_genomes_project 1 15970154 16009395 + MGP_C57BL6NJ_P0019475 Crispld1 protein_coding protein_coding MGP_C57BL6NJ_T0019800.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36945787 37098567 - MGP_C57BL6NJ_P0019800 Tmem131 protein_coding protein_coding MGP_C57BL6NJ_T0019801.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36945790 37098862 - MGP_C57BL6NJ_P0019801 Tmem131 protein_coding protein_coding MGP_C57BL6NJ_T0019802.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36954544 36975715 - Tmem131 protein_coding retained_intron MGP_C57BL6NJ_T0019803.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36964222 36966220 - Tmem131 protein_coding retained_intron MGP_C57BL6NJ_T0019804.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36973270 36977890 - MGP_C57BL6NJ_P0019804 Tmem131 protein_coding protein_coding MGP_C57BL6NJ_T0019805.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36975048 36978281 - MGP_C57BL6NJ_P0019805 Tmem131 protein_coding protein_coding MGP_C57BL6NJ_T0019806.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 36977788 36983910 - MGP_C57BL6NJ_P0019806 Tmem131 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019807.1 MGP_C57BL6NJ_G0016324.1 mouse_genomes_project 1 37000797 37102706 - MGP_C57BL6NJ_P0019807 Tmem131 protein_coding protein_coding MGP_C57BL6NJ_T0023795.1 MGP_C57BL6NJ_G0017134.1 mouse_genomes_project 1 182201515 182239757 + MGP_C57BL6NJ_P0023795 Olfml2b protein_coding protein_coding MGP_C57BL6NJ_T0006129.1 MGP_C57BL6NJ_G0005132.1 mouse_genomes_project 1 175267016 175270605 - Gm16548 lincRNA lincRNA MGP_C57BL6NJ_T0000594.1 MGP_C57BL6NJ_G0000510.1 mouse_genomes_project 1 46387227 46394529 - TEC TEC MGP_C57BL6NJ_T0022956.1 MGP_C57BL6NJ_G0016967.1 mouse_genomes_project 1 153099506 153125733 - MGP_C57BL6NJ_P0022956 Trove2 protein_coding protein_coding MGP_C57BL6NJ_T0022957.1 MGP_C57BL6NJ_G0016967.1 mouse_genomes_project 1 153104556 153125587 - Trove2 protein_coding retained_intron MGP_C57BL6NJ_T0023723.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178564601 178639999 - MGP_C57BL6NJ_P0023723 Uck2 protein_coding protein_coding MGP_C57BL6NJ_T0023724.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178567574 178639563 - MGP_C57BL6NJ_P0023724 Uck2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023725.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178567960 178578563 - MGP_C57BL6NJ_P0023725 Uck2 protein_coding protein_coding MGP_C57BL6NJ_T0023726.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178568065 178587732 - MGP_C57BL6NJ_P0023726 Uck2 protein_coding protein_coding MGP_C57BL6NJ_T0023727.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178571620 178639280 - MGP_C57BL6NJ_P0023727 Uck2 protein_coding protein_coding MGP_C57BL6NJ_T0023728.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178576419 178639557 - MGP_C57BL6NJ_P0023728 Uck2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023729.1 MGP_C57BL6NJ_G0017113.1 mouse_genomes_project 1 178579209 178639386 - Uck2 protein_coding processed_transcript MGP_C57BL6NJ_T0099306.1 MGP_C57BL6NJ_G0037369.1 mouse_genomes_project 1 162944523 162975230 - Gm28792 sense_intronic sense_intronic MGP_C57BL6NJ_T0100880.1 MGP_C57BL6NJ_G0038926.1 mouse_genomes_project 1 69121196 69121333 + Gm24729 snoRNA snoRNA MGP_C57BL6NJ_T0006188.1 MGP_C57BL6NJ_G0005177.1 mouse_genomes_project 1 197143874 197149993 - Gm37712 lincRNA lincRNA MGP_C57BL6NJ_T0003129.1 MGP_C57BL6NJ_G0002924.1 mouse_genomes_project 1 201075465 201077880 - 9330162B11Rik antisense antisense MGP_C57BL6NJ_T0000536.1 MGP_C57BL6NJ_G0000453.1 mouse_genomes_project 1 24227300 24228331 - TEC TEC MGP_C57BL6NJ_T0000589.1 MGP_C57BL6NJ_G0000505.1 mouse_genomes_project 1 43144341 43148192 + TEC TEC MGP_C57BL6NJ_T0024281.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192060260 192099728 + MGP_C57BL6NJ_P0024281 Sccpdh protein_coding protein_coding MGP_C57BL6NJ_T0024282.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192060260 192099728 + MGP_C57BL6NJ_P0024282 Sccpdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024283.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192060310 192070969 + Sccpdh protein_coding retained_intron MGP_C57BL6NJ_T0024284.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192073956 192099364 + MGP_C57BL6NJ_P0024284 Sccpdh protein_coding protein_coding MGP_C57BL6NJ_T0024285.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192073985 192097030 + MGP_C57BL6NJ_P0024285 Sccpdh protein_coding protein_coding MGP_C57BL6NJ_T0024287.1 MGP_C57BL6NJ_G0017261.1 mouse_genomes_project 1 192096383 192099372 + Sccpdh protein_coding retained_intron MGP_C57BL6NJ_T0005962.1 MGP_C57BL6NJ_G0004997.1 mouse_genomes_project 1 82405691 82410348 + Gm29611 lincRNA lincRNA MGP_C57BL6NJ_T0012264.1 MGP_C57BL6NJ_G0010309.1 mouse_genomes_project 1 39638134 39638689 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012382.1 MGP_C57BL6NJ_G0010427.1 mouse_genomes_project 1 75285319 75287667 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000647.1 MGP_C57BL6NJ_G0000563.1 mouse_genomes_project 1 76636344 76638883 - TEC TEC MGP_C57BL6NJ_T0100873.1 MGP_C57BL6NJ_G0038919.1 mouse_genomes_project 1 62023765 62023849 + Gm26293 snoRNA snoRNA MGP_C57BL6NJ_T0102659.1 MGP_C57BL6NJ_G0040454.1 mouse_genomes_project 1 92960038 92960896 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024114.1 MGP_C57BL6NJ_G0017212.1 mouse_genomes_project 1 185422074 185567291 - protein_coding retained_intron MGP_C57BL6NJ_T0000863.1 MGP_C57BL6NJ_G0000777.1 mouse_genomes_project 1 176812117 176812926 + TEC TEC MGP_C57BL6NJ_T0023291.1 MGP_C57BL6NJ_G0017030.1 mouse_genomes_project 1 167184690 167238599 - MGP_C57BL6NJ_P0023291 Fam20b protein_coding protein_coding MGP_C57BL6NJ_T0023292.1 MGP_C57BL6NJ_G0017030.1 mouse_genomes_project 1 167184729 167238613 - MGP_C57BL6NJ_P0023292 Fam20b protein_coding protein_coding MGP_C57BL6NJ_T0023293.1 MGP_C57BL6NJ_G0017030.1 mouse_genomes_project 1 167192095 167207065 - Fam20b protein_coding retained_intron MGP_C57BL6NJ_T0023294.1 MGP_C57BL6NJ_G0017030.1 mouse_genomes_project 1 167206910 167211974 - Fam20b protein_coding processed_transcript MGP_C57BL6NJ_T0023295.1 MGP_C57BL6NJ_G0017030.1 mouse_genomes_project 1 167209821 167236509 - Fam20b protein_coding retained_intron MGP_C57BL6NJ_T0000638.1 MGP_C57BL6NJ_G0000554.1 mouse_genomes_project 1 71023588 71024941 - TEC TEC MGP_C57BL6NJ_T0099645.1 MGP_C57BL6NJ_G0037691.1 mouse_genomes_project 1 181285131 181285238 - Gm22114 snRNA snRNA MGP_C57BL6NJ_T0102124.1 MGP_C57BL6NJ_G0040169.1 mouse_genomes_project 1 82827349 82827725 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102125.1 MGP_C57BL6NJ_G0040169.1 mouse_genomes_project 1 82827576 82827725 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0012191.1 MGP_C57BL6NJ_G0010236.1 mouse_genomes_project 1 16249470 16253715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099298.1 MGP_C57BL6NJ_G0037361.1 mouse_genomes_project 1 96942081 96943552 + Gm29101 sense_intronic sense_intronic MGP_C57BL6NJ_T0022485.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140522468 140568953 - MGP_C57BL6NJ_P0022485 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022486.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140522911 140528718 - Mfsd4a protein_coding retained_intron MGP_C57BL6NJ_T0022487.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140526288 140569007 - MGP_C57BL6NJ_P0022487 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022488.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140526492 140569005 - MGP_C57BL6NJ_P0022488 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022489.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140526492 140568868 - MGP_C57BL6NJ_P0022489 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022490.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140526519 140569104 - MGP_C57BL6NJ_P0022490 Mfsd4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022491.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140536430 140568975 - MGP_C57BL6NJ_P0022491 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022492.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140538464 140541547 - Mfsd4a protein_coding processed_transcript MGP_C57BL6NJ_T0022493.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140538564 140568934 - MGP_C57BL6NJ_P0022493 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022494.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140538568 140568942 - MGP_C57BL6NJ_P0022494 Mfsd4a protein_coding protein_coding MGP_C57BL6NJ_T0022495.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140540295 140546206 - Mfsd4a protein_coding retained_intron MGP_C57BL6NJ_T0022496.1 MGP_C57BL6NJ_G0016869.1 mouse_genomes_project 1 140546083 140555230 - MGP_C57BL6NJ_P0022496 Mfsd4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000570.1 MGP_C57BL6NJ_G0000486.1 mouse_genomes_project 1 33887930 33891010 + TEC TEC MGP_C57BL6NJ_T0000926.1 MGP_C57BL6NJ_G0000838.1 mouse_genomes_project 1 204988453 204989077 + TEC TEC MGP_C57BL6NJ_T0022631.1 MGP_C57BL6NJ_G0016898.1 mouse_genomes_project 1 142554167 142558296 - Optc protein_coding retained_intron MGP_C57BL6NJ_T0022632.1 MGP_C57BL6NJ_G0016898.1 mouse_genomes_project 1 142554167 142564141 - MGP_C57BL6NJ_P0022632 Optc protein_coding protein_coding MGP_C57BL6NJ_T0022633.1 MGP_C57BL6NJ_G0016898.1 mouse_genomes_project 1 142554168 142564968 - MGP_C57BL6NJ_P0022633 Optc protein_coding protein_coding MGP_C57BL6NJ_T0022634.1 MGP_C57BL6NJ_G0016898.1 mouse_genomes_project 1 142554667 142564095 - MGP_C57BL6NJ_P0022634 Optc protein_coding protein_coding MGP_C57BL6NJ_T0022635.1 MGP_C57BL6NJ_G0016898.1 mouse_genomes_project 1 142557802 142563971 - MGP_C57BL6NJ_P0022635 Optc protein_coding protein_coding MGP_C57BL6NJ_T0003022.1 MGP_C57BL6NJ_G0002840.1 mouse_genomes_project 1 136109037 136116974 + Gm28800 antisense antisense MGP_C57BL6NJ_T0000608.1 MGP_C57BL6NJ_G0000524.1 mouse_genomes_project 1 59124859 59126697 + TEC TEC MGP_C57BL6NJ_T0023534.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173878276 173905276 - MGP_C57BL6NJ_P0023534 Fmo2 protein_coding protein_coding MGP_C57BL6NJ_T0023535.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173878281 173891768 - Fmo2 protein_coding retained_intron MGP_C57BL6NJ_T0023536.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173880395 173905229 - MGP_C57BL6NJ_P0023536 Fmo2 protein_coding protein_coding MGP_C57BL6NJ_T0023537.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173881998 173884703 - Fmo2 protein_coding processed_transcript MGP_C57BL6NJ_T0023538.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173892820 173905048 - MGP_C57BL6NJ_P0023538 Fmo2 protein_coding protein_coding MGP_C57BL6NJ_T0023539.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173893330 173905290 - Fmo2 protein_coding retained_intron MGP_C57BL6NJ_T0023540.1 MGP_C57BL6NJ_G0017069.1 mouse_genomes_project 1 173904244 173905284 - Fmo2 protein_coding retained_intron MGP_C57BL6NJ_T0009750.1 MGP_C57BL6NJ_G0007835.1 mouse_genomes_project 1 198094534 198094603 + Mir664 miRNA miRNA MGP_C57BL6NJ_T0017549.1 MGP_C57BL6NJ_G0015518.1 mouse_genomes_project 1 183393048 183398298 - A630035G10Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017550.1 MGP_C57BL6NJ_G0015518.1 mouse_genomes_project 1 183396476 183398345 - A630035G10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0024754.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206541322 206564895 - MGP_C57BL6NJ_P0024754 protein_coding protein_coding MGP_C57BL6NJ_T0024755.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206542784 206567777 - MGP_C57BL6NJ_P0024755 protein_coding protein_coding MGP_C57BL6NJ_T0024756.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206554621 206583236 - MGP_C57BL6NJ_P0024756 protein_coding protein_coding MGP_C57BL6NJ_T0024757.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206554637 206583208 - MGP_C57BL6NJ_P0024757 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024758.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206557972 206565598 - protein_coding retained_intron MGP_C57BL6NJ_T0024759.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206570697 206572691 - protein_coding retained_intron MGP_C57BL6NJ_T0024760.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206570862 206579605 - protein_coding processed_transcript MGP_C57BL6NJ_T0024761.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206572261 206583171 - MGP_C57BL6NJ_P0024761 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024762.1 MGP_C57BL6NJ_G0017357.1 mouse_genomes_project 1 206572279 206574031 - protein_coding processed_transcript MGP_C57BL6NJ_T0023805.1 MGP_C57BL6NJ_G0017137.1 mouse_genomes_project 1 182481326 182482143 + MGP_C57BL6NJ_P0023805 Gm26620 protein_coding protein_coding MGP_C57BL6NJ_T0024200.1 MGP_C57BL6NJ_G0017244.1 mouse_genomes_project 1 188028210 188030107 + MGP_C57BL6NJ_P0024200 Gm38100 protein_coding protein_coding MGP_C57BL6NJ_T0024201.1 MGP_C57BL6NJ_G0017244.1 mouse_genomes_project 1 188028251 188029580 + MGP_C57BL6NJ_P0024201 Gm38100 protein_coding protein_coding MGP_C57BL6NJ_T0023451.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172154465 172165568 - MGP_C57BL6NJ_P0023451 Prdx6 protein_coding protein_coding MGP_C57BL6NJ_T0023452.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172155368 172165540 - MGP_C57BL6NJ_P0023452 Prdx6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023453.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172155917 172165523 - Prdx6 protein_coding processed_transcript MGP_C57BL6NJ_T0023454.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172155951 172165520 - MGP_C57BL6NJ_P0023454 Prdx6 protein_coding protein_coding MGP_C57BL6NJ_T0023455.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172155988 172165475 - Prdx6 protein_coding processed_transcript MGP_C57BL6NJ_T0023456.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172156161 172164908 - Prdx6 protein_coding processed_transcript MGP_C57BL6NJ_T0023457.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172157964 172165520 - Prdx6 protein_coding processed_transcript MGP_C57BL6NJ_T0023458.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172162958 172165516 - Prdx6 protein_coding retained_intron MGP_C57BL6NJ_T0023459.1 MGP_C57BL6NJ_G0017054.1 mouse_genomes_project 1 172163916 172165516 - Prdx6 protein_coding retained_intron MGP_C57BL6NJ_T0005904.1 MGP_C57BL6NJ_G0004953.1 mouse_genomes_project 1 61679686 61694868 + Gm29016 lincRNA lincRNA MGP_C57BL6NJ_T0099593.1 MGP_C57BL6NJ_G0037639.1 mouse_genomes_project 1 63959137 63959240 + Gm25839 snRNA snRNA MGP_C57BL6NJ_T0000858.1 MGP_C57BL6NJ_G0000772.1 mouse_genomes_project 1 175551195 175553477 + TEC TEC MGP_C57BL6NJ_T0012408.1 MGP_C57BL6NJ_G0010453.1 mouse_genomes_project 1 87277094 87277466 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023583.1 MGP_C57BL6NJ_G0017083.1 mouse_genomes_project 1 175270225 175349395 + MGP_C57BL6NJ_P0023583 F5 protein_coding protein_coding MGP_C57BL6NJ_T0099631.1 MGP_C57BL6NJ_G0037677.1 mouse_genomes_project 1 145559180 145559278 + Gm24086 snRNA snRNA MGP_C57BL6NJ_T0006039.1 MGP_C57BL6NJ_G0005061.1 mouse_genomes_project 1 127349470 127355990 + lincRNA lincRNA MGP_C57BL6NJ_T0020466.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61250302 + Stradb protein_coding retained_intron MGP_C57BL6NJ_T0020467.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61256674 + Stradb protein_coding retained_intron MGP_C57BL6NJ_T0020468.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61260339 + MGP_C57BL6NJ_P0020468 Stradb protein_coding protein_coding MGP_C57BL6NJ_T0020469.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61264543 + MGP_C57BL6NJ_P0020469 Stradb protein_coding protein_coding MGP_C57BL6NJ_T0020470.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61263950 + MGP_C57BL6NJ_P0020470 Stradb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020471.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61241552 61263825 + MGP_C57BL6NJ_P0020471 Stradb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020472.1 MGP_C57BL6NJ_G0016451.1 mouse_genomes_project 1 61259884 61263187 + MGP_C57BL6NJ_P0020472 Stradb protein_coding protein_coding MGP_C57BL6NJ_T0012662.1 MGP_C57BL6NJ_G0010707.1 mouse_genomes_project 1 202456291 202456672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023755.1 MGP_C57BL6NJ_G0017122.1 mouse_genomes_project 1 181129856 181172328 + MGP_C57BL6NJ_P0023755 Rgs5 protein_coding protein_coding MGP_C57BL6NJ_T0023756.1 MGP_C57BL6NJ_G0017122.1 mouse_genomes_project 1 181129877 181158241 + MGP_C57BL6NJ_P0023756 Rgs5 protein_coding protein_coding MGP_C57BL6NJ_T0000680.1 MGP_C57BL6NJ_G0000596.1 mouse_genomes_project 1 91446821 91449810 + TEC TEC MGP_C57BL6NJ_T0100914.1 MGP_C57BL6NJ_G0038960.1 mouse_genomes_project 1 154715674 154715801 - Gm25460 snoRNA snoRNA MGP_C57BL6NJ_T0024092.1 MGP_C57BL6NJ_G0017204.1 mouse_genomes_project 1 185036014 185037048 + MGP_C57BL6NJ_P0024092 Olfr1404 protein_coding protein_coding MGP_C57BL6NJ_T0000805.1 MGP_C57BL6NJ_G0000719.1 mouse_genomes_project 1 159368188 159369644 - TEC TEC MGP_C57BL6NJ_T0000677.1 MGP_C57BL6NJ_G0000593.1 mouse_genomes_project 1 90685346 90688025 + TEC TEC MGP_C57BL6NJ_T0000525.1 MGP_C57BL6NJ_G0000444.1 mouse_genomes_project 1 18036208 18040002 + TEC TEC MGP_C57BL6NJ_T0000506.1 MGP_C57BL6NJ_G0000425.1 mouse_genomes_project 1 9105289 9107882 + TEC TEC MGP_C57BL6NJ_T0012384.1 MGP_C57BL6NJ_G0010429.1 mouse_genomes_project 1 76741474 76741808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020091.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45339234 45598586 + MGP_C57BL6NJ_P0020091 Gulp1 protein_coding protein_coding MGP_C57BL6NJ_T0020092.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45339416 45589724 + MGP_C57BL6NJ_P0020092 Gulp1 protein_coding protein_coding MGP_C57BL6NJ_T0020093.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45339416 45598574 + MGP_C57BL6NJ_P0020093 Gulp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020094.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45339450 45589345 + Gulp1 protein_coding processed_transcript MGP_C57BL6NJ_T0020095.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45340320 45489791 + MGP_C57BL6NJ_P0020095 Gulp1 protein_coding protein_coding MGP_C57BL6NJ_T0020096.1 MGP_C57BL6NJ_G0016382.1 mouse_genomes_project 1 45471885 45598573 + MGP_C57BL6NJ_P0020096 Gulp1 protein_coding protein_coding MGP_C57BL6NJ_T0012140.1 MGP_C57BL6NJ_G0010185.1 mouse_genomes_project 1 3646966 3647439 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006043.1 MGP_C57BL6NJ_G0005064.1 mouse_genomes_project 1 128264335 128269458 + Gm29346 lincRNA lincRNA MGP_C57BL6NJ_T0099299.1 MGP_C57BL6NJ_G0037362.1 mouse_genomes_project 1 111826005 111826458 - Gm28404 sense_intronic sense_intronic MGP_C57BL6NJ_T0002981.1 MGP_C57BL6NJ_G0002807.1 mouse_genomes_project 1 78320631 78323094 - Gm29539 antisense antisense MGP_C57BL6NJ_T0020166.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53800976 53836248 + MGP_C57BL6NJ_P0020166 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020167.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53800991 53842750 + MGP_C57BL6NJ_P0020167 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020168.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801026 53836248 + MGP_C57BL6NJ_P0020168 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020169.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801028 53841892 + MGP_C57BL6NJ_P0020169 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020170.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801034 53813469 + MGP_C57BL6NJ_P0020170 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020171.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801085 53836167 + MGP_C57BL6NJ_P0020171 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020172.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801095 53801931 + Stat1 protein_coding retained_intron MGP_C57BL6NJ_T0020173.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801108 53818688 + Stat1 protein_coding retained_intron MGP_C57BL6NJ_T0020174.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53801160 53841615 + MGP_C57BL6NJ_P0020174 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020175.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53830939 53833235 + Stat1 protein_coding retained_intron MGP_C57BL6NJ_T0020176.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53831093 53842748 + MGP_C57BL6NJ_P0020176 Stat1 protein_coding protein_coding MGP_C57BL6NJ_T0020177.1 MGP_C57BL6NJ_G0016396.1 mouse_genomes_project 1 53833088 53840445 + MGP_C57BL6NJ_P0020177 Stat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099582.1 MGP_C57BL6NJ_G0037628.1 mouse_genomes_project 1 33000927 33001037 + Gm24901 snRNA snRNA MGP_C57BL6NJ_T0024452.1 MGP_C57BL6NJ_G0017294.1 mouse_genomes_project 1 195138346 195193049 + MGP_C57BL6NJ_P0024452 Trp53bp2 protein_coding protein_coding MGP_C57BL6NJ_T0024453.1 MGP_C57BL6NJ_G0017294.1 mouse_genomes_project 1 195172251 195192399 + Trp53bp2 protein_coding retained_intron MGP_C57BL6NJ_T0024454.1 MGP_C57BL6NJ_G0017294.1 mouse_genomes_project 1 195174918 195178699 + MGP_C57BL6NJ_P0024454 Trp53bp2 protein_coding protein_coding MGP_C57BL6NJ_T0012675.1 MGP_C57BL6NJ_G0010720.1 mouse_genomes_project 1 207349531 207350459 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000712.1 MGP_C57BL6NJ_G0000628.1 mouse_genomes_project 1 112166172 112169533 - TEC TEC MGP_C57BL6NJ_T0002980.1 MGP_C57BL6NJ_G0002806.1 mouse_genomes_project 1 77776578 77777284 + Gm28364 antisense antisense MGP_C57BL6NJ_T0012283.1 MGP_C57BL6NJ_G0010328.1 mouse_genomes_project 1 46415122 46415756 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000628.1 MGP_C57BL6NJ_G0000544.1 mouse_genomes_project 1 67427895 67432263 + TEC TEC MGP_C57BL6NJ_T0000831.1 MGP_C57BL6NJ_G0000745.1 mouse_genomes_project 1 168003138 168005535 - TEC TEC MGP_C57BL6NJ_T0099609.1 MGP_C57BL6NJ_G0037655.1 mouse_genomes_project 1 92018279 92018386 - Gm22549 snRNA snRNA MGP_C57BL6NJ_T0100897.1 MGP_C57BL6NJ_G0038943.1 mouse_genomes_project 1 113843511 113843642 - Gm24553 snoRNA snoRNA MGP_C57BL6NJ_T0022034.1 MGP_C57BL6NJ_G0016764.1 mouse_genomes_project 1 111524635 111606752 - MGP_C57BL6NJ_P0022034 Rnf152 protein_coding protein_coding MGP_C57BL6NJ_T0022035.1 MGP_C57BL6NJ_G0016764.1 mouse_genomes_project 1 111524638 111606792 - MGP_C57BL6NJ_P0022035 Rnf152 protein_coding protein_coding MGP_C57BL6NJ_T0005828.1 MGP_C57BL6NJ_G0004901.1 mouse_genomes_project 1 23938213 23938865 - Gm29414 lincRNA lincRNA MGP_C57BL6NJ_T0021826.1 MGP_C57BL6NJ_G0016720.1 mouse_genomes_project 1 97827200 97829965 - protein_coding retained_intron MGP_C57BL6NJ_T0021827.1 MGP_C57BL6NJ_G0016720.1 mouse_genomes_project 1 97827200 97831979 - MGP_C57BL6NJ_P0021827 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021828.1 MGP_C57BL6NJ_G0016720.1 mouse_genomes_project 1 97827200 97832041 - MGP_C57BL6NJ_P0021828 protein_coding protein_coding MGP_C57BL6NJ_T0021829.1 MGP_C57BL6NJ_G0016720.1 mouse_genomes_project 1 97827200 97830620 - MGP_C57BL6NJ_P0021829 protein_coding protein_coding MGP_C57BL6NJ_T0021830.1 MGP_C57BL6NJ_G0016720.1 mouse_genomes_project 1 97829425 97832041 - protein_coding retained_intron MGP_C57BL6NJ_T0022582.1 MGP_C57BL6NJ_G0016886.1 mouse_genomes_project 1 141911961 141927905 + MGP_C57BL6NJ_P0022582 Golt1a protein_coding protein_coding MGP_C57BL6NJ_T0022587.1 MGP_C57BL6NJ_G0016886.1 mouse_genomes_project 1 141912051 141925929 + MGP_C57BL6NJ_P0022587 Golt1a protein_coding protein_coding MGP_C57BL6NJ_T0011514.1 MGP_C57BL6NJ_G0009599.1 mouse_genomes_project 1 139514942 139515295 - Gm25717 misc_RNA misc_RNA MGP_C57BL6NJ_T0002995.1 MGP_C57BL6NJ_G0002820.1 mouse_genomes_project 1 92544227 92545180 - Gm19582 antisense antisense MGP_C57BL6NJ_T0012304.1 MGP_C57BL6NJ_G0010349.1 mouse_genomes_project 1 50909316 50909756 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000672.1 MGP_C57BL6NJ_G0000588.1 mouse_genomes_project 1 88448205 88449849 - TEC TEC MGP_C57BL6NJ_T0012309.1 MGP_C57BL6NJ_G0010354.1 mouse_genomes_project 1 52970721 52971746 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000839.1 MGP_C57BL6NJ_G0000753.1 mouse_genomes_project 1 171019067 171020941 + TEC TEC MGP_C57BL6NJ_T0005920.1 MGP_C57BL6NJ_G0004966.1 mouse_genomes_project 1 65854989 65861257 - Gm11608 lincRNA lincRNA MGP_C57BL6NJ_T0005921.1 MGP_C57BL6NJ_G0004966.1 mouse_genomes_project 1 65854989 65861262 - Gm11608 lincRNA lincRNA MGP_C57BL6NJ_T0000727.1 MGP_C57BL6NJ_G0000643.1 mouse_genomes_project 1 130574976 130576704 + TEC TEC MGP_C57BL6NJ_T0012642.1 MGP_C57BL6NJ_G0010687.1 mouse_genomes_project 1 189469833 189470150 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023038.1 MGP_C57BL6NJ_G0016982.1 mouse_genomes_project 1 161467202 161487148 + MGP_C57BL6NJ_P0023038 Ivns1abp protein_coding protein_coding MGP_C57BL6NJ_T0023039.1 MGP_C57BL6NJ_G0016982.1 mouse_genomes_project 1 161467234 161479525 + MGP_C57BL6NJ_P0023039 Ivns1abp protein_coding protein_coding MGP_C57BL6NJ_T0023040.1 MGP_C57BL6NJ_G0016982.1 mouse_genomes_project 1 161467243 161487141 + MGP_C57BL6NJ_P0023040 Ivns1abp protein_coding protein_coding MGP_C57BL6NJ_T0023041.1 MGP_C57BL6NJ_G0016982.1 mouse_genomes_project 1 161467303 161486091 + MGP_C57BL6NJ_P0023041 Ivns1abp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023042.1 MGP_C57BL6NJ_G0016982.1 mouse_genomes_project 1 161483972 161484760 + MGP_C57BL6NJ_P0023042 Ivns1abp protein_coding protein_coding MGP_C57BL6NJ_T0000861.1 MGP_C57BL6NJ_G0000775.1 mouse_genomes_project 1 176598904 176600239 + TEC TEC MGP_C57BL6NJ_T0012242.1 MGP_C57BL6NJ_G0010287.1 mouse_genomes_project 1 33686292 33688791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023625.1 MGP_C57BL6NJ_G0017095.1 mouse_genomes_project 1 176541842 176680144 - MGP_C57BL6NJ_P0023625 protein_coding protein_coding MGP_C57BL6NJ_T0023626.1 MGP_C57BL6NJ_G0017095.1 mouse_genomes_project 1 176542514 176569143 - protein_coding retained_intron MGP_C57BL6NJ_T0023627.1 MGP_C57BL6NJ_G0017095.1 mouse_genomes_project 1 176568202 176609843 - MGP_C57BL6NJ_P0023627 protein_coding protein_coding MGP_C57BL6NJ_T0023628.1 MGP_C57BL6NJ_G0017095.1 mouse_genomes_project 1 176568632 176609858 - MGP_C57BL6NJ_P0023628 protein_coding protein_coding MGP_C57BL6NJ_T0023629.1 MGP_C57BL6NJ_G0017095.1 mouse_genomes_project 1 176585653 176680154 - protein_coding processed_transcript MGP_C57BL6NJ_T0102684.1 MGP_C57BL6NJ_G0040479.1 mouse_genomes_project 1 169955638 169957642 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017554.1 MGP_C57BL6NJ_G0015520.1 mouse_genomes_project 1 189665683 189667846 + Gm29856 processed_transcript processed_transcript MGP_C57BL6NJ_T0017555.1 MGP_C57BL6NJ_G0015520.1 mouse_genomes_project 1 189666824 189667847 + Gm29856 processed_transcript processed_transcript MGP_C57BL6NJ_T0022536.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141037388 141056135 - MGP_C57BL6NJ_P0022536 Cntn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022537.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141037388 141043599 - MGP_C57BL6NJ_P0022537 Cntn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022538.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141039739 141077338 - Cntn2 protein_coding retained_intron MGP_C57BL6NJ_T0022539.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141039743 141077387 - MGP_C57BL6NJ_P0022539 Cntn2 protein_coding protein_coding MGP_C57BL6NJ_T0022540.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141039753 141077313 - Cntn2 protein_coding retained_intron MGP_C57BL6NJ_T0022541.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141044962 141049589 - Cntn2 protein_coding retained_intron MGP_C57BL6NJ_T0022542.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141061812 141066698 - MGP_C57BL6NJ_P0022542 Cntn2 protein_coding protein_coding MGP_C57BL6NJ_T0022543.1 MGP_C57BL6NJ_G0016879.1 mouse_genomes_project 1 141066470 141077704 - MGP_C57BL6NJ_P0022543 Cntn2 protein_coding protein_coding MGP_C57BL6NJ_T0102139.1 MGP_C57BL6NJ_G0040175.1 mouse_genomes_project 1 198358183 198370727 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102140.1 MGP_C57BL6NJ_G0040175.1 mouse_genomes_project 1 198369955 198370585 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0000798.1 MGP_C57BL6NJ_G0000712.1 mouse_genomes_project 1 150804960 150806232 + TEC TEC MGP_C57BL6NJ_T0009707.1 MGP_C57BL6NJ_G0007792.1 mouse_genomes_project 1 98049739 98049805 + Mir149 miRNA miRNA MGP_C57BL6NJ_T0006059.1 MGP_C57BL6NJ_G0005076.1 mouse_genomes_project 1 138580930 138593743 - Gm16081 lincRNA lincRNA MGP_C57BL6NJ_T0021062.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681395 78684375 + Zfand2b protein_coding retained_intron MGP_C57BL6NJ_T0021063.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681395 78684379 + MGP_C57BL6NJ_P0021063 Zfand2b protein_coding protein_coding MGP_C57BL6NJ_T0021064.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681395 78683502 + MGP_C57BL6NJ_P0021064 Zfand2b protein_coding protein_coding MGP_C57BL6NJ_T0021065.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681404 78684375 + MGP_C57BL6NJ_P0021065 Zfand2b protein_coding protein_coding MGP_C57BL6NJ_T0021066.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681407 78682642 + Zfand2b protein_coding retained_intron MGP_C57BL6NJ_T0021067.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681415 78682381 + Zfand2b protein_coding retained_intron MGP_C57BL6NJ_T0021068.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681450 78683319 + Zfand2b protein_coding retained_intron MGP_C57BL6NJ_T0021069.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681527 78683437 + Zfand2b protein_coding retained_intron MGP_C57BL6NJ_T0021070.1 MGP_C57BL6NJ_G0016564.1 mouse_genomes_project 1 78681677 78684152 + MGP_C57BL6NJ_P0021070 Zfand2b protein_coding protein_coding MGP_C57BL6NJ_T0022920.1 MGP_C57BL6NJ_G0016959.1 mouse_genomes_project 1 148639782 148663032 - MGP_C57BL6NJ_P0022920 Cfhr1 protein_coding protein_coding MGP_C57BL6NJ_T0022921.1 MGP_C57BL6NJ_G0016959.1 mouse_genomes_project 1 148646833 148649751 - MGP_C57BL6NJ_P0022921 Cfhr1 protein_coding protein_coding MGP_C57BL6NJ_T0006086.1 MGP_C57BL6NJ_G0005099.1 mouse_genomes_project 1 147215082 147217032 - Gm28556 lincRNA lincRNA MGP_C57BL6NJ_T0000556.1 MGP_C57BL6NJ_G0000473.1 mouse_genomes_project 1 30386189 30389073 - TEC TEC MGP_C57BL6NJ_T0000876.1 MGP_C57BL6NJ_G0000790.1 mouse_genomes_project 1 188066493 188068453 - TEC TEC MGP_C57BL6NJ_T0100871.1 MGP_C57BL6NJ_G0038917.1 mouse_genomes_project 1 61341758 61341889 + Gm25502 snoRNA snoRNA MGP_C57BL6NJ_T0005996.1 MGP_C57BL6NJ_G0005026.1 mouse_genomes_project 1 96509301 96510452 - 1700020N18Rik lincRNA lincRNA MGP_C57BL6NJ_T0012314.1 MGP_C57BL6NJ_G0010359.1 mouse_genomes_project 1 54473121 54473532 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003007.1 MGP_C57BL6NJ_G0002832.1 mouse_genomes_project 1 102523806 102562133 + Panct2 antisense antisense MGP_C57BL6NJ_T0003008.1 MGP_C57BL6NJ_G0002832.1 mouse_genomes_project 1 102524901 102534908 + Panct2 antisense antisense MGP_C57BL6NJ_T0003009.1 MGP_C57BL6NJ_G0002832.1 mouse_genomes_project 1 102524913 102531575 + Panct2 antisense antisense MGP_C57BL6NJ_T0019459.1 MGP_C57BL6NJ_G0016249.1 mouse_genomes_project 1 14794299 14808602 + MGP_C57BL6NJ_P0019459 Tmem70 protein_coding protein_coding MGP_C57BL6NJ_T0019460.1 MGP_C57BL6NJ_G0016249.1 mouse_genomes_project 1 14794302 14807622 + Tmem70 protein_coding processed_transcript MGP_C57BL6NJ_T0019461.1 MGP_C57BL6NJ_G0016249.1 mouse_genomes_project 1 14794302 14808682 + MGP_C57BL6NJ_P0019461 Tmem70 protein_coding protein_coding MGP_C57BL6NJ_T0019462.1 MGP_C57BL6NJ_G0016249.1 mouse_genomes_project 1 14794328 14794904 + Tmem70 protein_coding processed_transcript MGP_C57BL6NJ_T0099601.1 MGP_C57BL6NJ_G0037647.1 mouse_genomes_project 1 73725278 73725385 + Gm23422 snRNA snRNA MGP_C57BL6NJ_T0102654.1 MGP_C57BL6NJ_G0040449.1 mouse_genomes_project 1 92829740 92829954 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0023917.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183023644 183031087 - Nit1 protein_coding retained_intron MGP_C57BL6NJ_T0023918.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183023644 183031233 - MGP_C57BL6NJ_P0023918 Nit1 protein_coding protein_coding MGP_C57BL6NJ_T0023919.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183026207 183031251 - MGP_C57BL6NJ_P0023919 Nit1 protein_coding protein_coding MGP_C57BL6NJ_T0023920.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183026965 183031245 - Nit1 protein_coding retained_intron MGP_C57BL6NJ_T0023921.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183027880 183031250 - MGP_C57BL6NJ_P0023921 Nit1 protein_coding protein_coding MGP_C57BL6NJ_T0023922.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183029413 183031230 - MGP_C57BL6NJ_P0023922 Nit1 protein_coding protein_coding MGP_C57BL6NJ_T0023923.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183029468 183030061 - Nit1 protein_coding retained_intron MGP_C57BL6NJ_T0023924.1 MGP_C57BL6NJ_G0017158.1 mouse_genomes_project 1 183029784 183031250 - MGP_C57BL6NJ_P0023924 Nit1 protein_coding protein_coding MGP_C57BL6NJ_T0024788.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206661785 206663025 + Lamb3 protein_coding retained_intron MGP_C57BL6NJ_T0024789.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206661811 206805529 + MGP_C57BL6NJ_P0024789 Lamb3 protein_coding protein_coding MGP_C57BL6NJ_T0024790.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206661818 206787645 + MGP_C57BL6NJ_P0024790 Lamb3 protein_coding protein_coding MGP_C57BL6NJ_T0024791.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206661836 206711159 + Lamb3 protein_coding processed_transcript MGP_C57BL6NJ_T0024798.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206733256 206740524 + Lamb3 protein_coding processed_transcript MGP_C57BL6NJ_T0024799.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206763615 206805529 + MGP_C57BL6NJ_P0024799 Lamb3 protein_coding protein_coding MGP_C57BL6NJ_T0024800.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206763843 206765079 + Lamb3 protein_coding processed_transcript MGP_C57BL6NJ_T0024801.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206763865 206805526 + MGP_C57BL6NJ_P0024801 Lamb3 protein_coding protein_coding MGP_C57BL6NJ_T0024802.1 MGP_C57BL6NJ_G0017361.1 mouse_genomes_project 1 206782349 206787644 + Lamb3 protein_coding processed_transcript MGP_C57BL6NJ_T0009676.1 MGP_C57BL6NJ_G0007761.1 mouse_genomes_project 1 50482806 50483248 + Gm22693 miRNA miRNA MGP_C57BL6NJ_T0005874.1 MGP_C57BL6NJ_G0004930.1 mouse_genomes_project 1 43424492 43426662 + Dalir lincRNA lincRNA MGP_C57BL6NJ_T0022080.1 MGP_C57BL6NJ_G0016773.1 mouse_genomes_project 1 113183791 113214375 + MGP_C57BL6NJ_P0022080 Serpinb5 protein_coding protein_coding MGP_C57BL6NJ_T0022081.1 MGP_C57BL6NJ_G0016773.1 mouse_genomes_project 1 113183792 113211370 + MGP_C57BL6NJ_P0022081 Serpinb5 protein_coding protein_coding MGP_C57BL6NJ_T0022082.1 MGP_C57BL6NJ_G0016773.1 mouse_genomes_project 1 113183821 113214375 + MGP_C57BL6NJ_P0022082 Serpinb5 protein_coding protein_coding MGP_C57BL6NJ_T0022083.1 MGP_C57BL6NJ_G0016773.1 mouse_genomes_project 1 113198624 113214374 + MGP_C57BL6NJ_P0022083 Serpinb5 protein_coding protein_coding MGP_C57BL6NJ_T0000655.1 MGP_C57BL6NJ_G0000571.1 mouse_genomes_project 1 82232969 82234448 - TEC TEC MGP_C57BL6NJ_T0023131.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163754436 163787482 - MGP_C57BL6NJ_P0023131 Dhx9 protein_coding protein_coding MGP_C57BL6NJ_T0023132.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163754436 163787534 - MGP_C57BL6NJ_P0023132 Dhx9 protein_coding protein_coding MGP_C57BL6NJ_T0023133.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163761311 163787519 - MGP_C57BL6NJ_P0023133 Dhx9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023134.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163761317 163778013 - MGP_C57BL6NJ_P0023134 Dhx9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023135.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163763020 163787525 - MGP_C57BL6NJ_P0023135 Dhx9 protein_coding protein_coding MGP_C57BL6NJ_T0023136.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163772068 163778027 - Dhx9 protein_coding retained_intron MGP_C57BL6NJ_T0023137.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163776712 163787532 - Dhx9 protein_coding retained_intron MGP_C57BL6NJ_T0023138.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163778150 163780424 - Dhx9 protein_coding retained_intron MGP_C57BL6NJ_T0023139.1 MGP_C57BL6NJ_G0017000.1 mouse_genomes_project 1 163782244 163787508 - Dhx9 protein_coding retained_intron MGP_C57BL6NJ_T0006158.1 MGP_C57BL6NJ_G0005157.1 mouse_genomes_project 1 188578651 188687529 - lincRNA lincRNA MGP_C57BL6NJ_T0020119.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46869052 46887717 - MGP_C57BL6NJ_P0020119 Slc40a1 protein_coding protein_coding MGP_C57BL6NJ_T0020120.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46876252 46887744 - Slc40a1 protein_coding retained_intron MGP_C57BL6NJ_T0020121.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46879976 46885444 - Slc40a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020122.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46879984 46887397 - Slc40a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020123.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46882265 46888654 - MGP_C57BL6NJ_P0020123 Slc40a1 protein_coding protein_coding MGP_C57BL6NJ_T0020124.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46882265 46888654 - MGP_C57BL6NJ_P0020124 Slc40a1 protein_coding protein_coding MGP_C57BL6NJ_T0020125.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46882265 46888654 - MGP_C57BL6NJ_P0020125 Slc40a1 protein_coding protein_coding MGP_C57BL6NJ_T0020126.1 MGP_C57BL6NJ_G0016387.1 mouse_genomes_project 1 46885866 46888658 - Slc40a1 protein_coding retained_intron MGP_C57BL6NJ_T0012155.1 MGP_C57BL6NJ_G0010200.1 mouse_genomes_project 1 5150031 5152279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009712.1 MGP_C57BL6NJ_G0007797.1 mouse_genomes_project 1 101915422 101915532 + Gm22917 miRNA miRNA MGP_C57BL6NJ_T0012164.1 MGP_C57BL6NJ_G0010209.1 mouse_genomes_project 1 7050956 7053141 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022860.1 MGP_C57BL6NJ_G0016947.1 mouse_genomes_project 1 145482828 145487981 + MGP_C57BL6NJ_P0022860 Zfp281 protein_coding protein_coding MGP_C57BL6NJ_T0022861.1 MGP_C57BL6NJ_G0016947.1 mouse_genomes_project 1 145482828 145487981 + MGP_C57BL6NJ_P0022861 Zfp281 protein_coding protein_coding MGP_C57BL6NJ_T0019519.1 MGP_C57BL6NJ_G0016270.1 mouse_genomes_project 1 19907717 19913112 + MGP_C57BL6NJ_P0019519 protein_coding protein_coding MGP_C57BL6NJ_T0023471.1 MGP_C57BL6NJ_G0017059.1 mouse_genomes_project 1 172905077 172943600 - MGP_C57BL6NJ_P0023471 4930558K02Rik protein_coding protein_coding MGP_C57BL6NJ_T0023472.1 MGP_C57BL6NJ_G0017059.1 mouse_genomes_project 1 172905082 172932153 - 4930558K02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0099300.1 MGP_C57BL6NJ_G0037363.1 mouse_genomes_project 1 139842496 139844898 - Gm29488 sense_intronic sense_intronic MGP_C57BL6NJ_T0022544.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141104235 141279963 - MGP_C57BL6NJ_P0022544 Nfasc protein_coding protein_coding MGP_C57BL6NJ_T0022545.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141104321 141216649 - MGP_C57BL6NJ_P0022545 Nfasc protein_coding protein_coding MGP_C57BL6NJ_T0022546.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141104324 141173322 - MGP_C57BL6NJ_P0022546 Nfasc protein_coding protein_coding MGP_C57BL6NJ_T0022547.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141111133 141121931 - Nfasc protein_coding processed_transcript MGP_C57BL6NJ_T0022548.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141134658 141279997 - MGP_C57BL6NJ_P0022548 Nfasc protein_coding protein_coding MGP_C57BL6NJ_T0022549.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141136457 141139983 - Nfasc protein_coding retained_intron MGP_C57BL6NJ_T0022550.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141154184 141159321 - Nfasc protein_coding retained_intron MGP_C57BL6NJ_T0022551.1 MGP_C57BL6NJ_G0016880.1 mouse_genomes_project 1 141201437 141279978 - Nfasc protein_coding processed_transcript MGP_C57BL6NJ_T0012355.1 MGP_C57BL6NJ_G0010400.1 mouse_genomes_project 1 65631094 65631340 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003150.1 MGP_C57BL6NJ_G0002937.1 mouse_genomes_project 1 206291170 206292494 + Gm15867 antisense antisense MGP_C57BL6NJ_T0000507.1 MGP_C57BL6NJ_G0000426.1 mouse_genomes_project 1 9407432 9409576 + TEC TEC MGP_C57BL6NJ_T0000673.1 MGP_C57BL6NJ_G0000589.1 mouse_genomes_project 1 88705067 88707964 - TEC TEC MGP_C57BL6NJ_T0023646.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176819204 176865106 - MGP_C57BL6NJ_P0023646 Mpzl1 protein_coding protein_coding MGP_C57BL6NJ_T0023647.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176820342 176831830 - MGP_C57BL6NJ_P0023647 Mpzl1 protein_coding protein_coding MGP_C57BL6NJ_T0023648.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176820381 176865226 - MGP_C57BL6NJ_P0023648 Mpzl1 protein_coding protein_coding MGP_C57BL6NJ_T0023649.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176827851 176836651 - Mpzl1 protein_coding processed_transcript MGP_C57BL6NJ_T0023650.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176830262 176831786 - Mpzl1 protein_coding retained_intron MGP_C57BL6NJ_T0023651.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176831676 176842567 - Mpzl1 protein_coding processed_transcript MGP_C57BL6NJ_T0023652.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176831744 176865155 - MGP_C57BL6NJ_P0023652 Mpzl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023653.1 MGP_C57BL6NJ_G0017098.1 mouse_genomes_project 1 176834470 176864799 - Mpzl1 protein_coding processed_transcript MGP_C57BL6NJ_T0020664.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66368720 66397192 + MGP_C57BL6NJ_P0020664 Fastkd2 protein_coding protein_coding MGP_C57BL6NJ_T0020665.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66368747 66377067 + Fastkd2 protein_coding retained_intron MGP_C57BL6NJ_T0020666.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66368749 66395075 + Fastkd2 protein_coding retained_intron MGP_C57BL6NJ_T0020667.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66376933 66390594 + Fastkd2 protein_coding processed_transcript MGP_C57BL6NJ_T0020668.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66390557 66392813 + Fastkd2 protein_coding retained_intron MGP_C57BL6NJ_T0020669.1 MGP_C57BL6NJ_G0016483.1 mouse_genomes_project 1 66393757 66395002 + Fastkd2 protein_coding processed_transcript MGP_C57BL6NJ_T0099660.1 MGP_C57BL6NJ_G0037706.1 mouse_genomes_project 1 197369728 197369826 - Gm23349 snRNA snRNA MGP_C57BL6NJ_T0019996.1 MGP_C57BL6NJ_G0016361.1 mouse_genomes_project 1 41005706 41075135 + MGP_C57BL6NJ_P0019996 Slc9a4 protein_coding protein_coding MGP_C57BL6NJ_T0019997.1 MGP_C57BL6NJ_G0016361.1 mouse_genomes_project 1 41005829 41011050 + Slc9a4 protein_coding processed_transcript MGP_C57BL6NJ_T0019998.1 MGP_C57BL6NJ_G0016361.1 mouse_genomes_project 1 41042745 41045047 + Slc9a4 protein_coding processed_transcript MGP_C57BL6NJ_T0019999.1 MGP_C57BL6NJ_G0016361.1 mouse_genomes_project 1 41073377 41074826 + Slc9a4 protein_coding retained_intron MGP_C57BL6NJ_T0006045.1 MGP_C57BL6NJ_G0005066.1 mouse_genomes_project 1 128355900 128366622 - Gm29348 lincRNA lincRNA MGP_C57BL6NJ_T0012512.1 MGP_C57BL6NJ_G0010557.1 mouse_genomes_project 1 127237139 127237849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102653.1 MGP_C57BL6NJ_G0040448.1 mouse_genomes_project 1 92829731 92829981 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006061.1 MGP_C57BL6NJ_G0005078.1 mouse_genomes_project 1 140536451 140568987 + Gm26892 lincRNA lincRNA MGP_C57BL6NJ_T0024560.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199581276 199672392 - MGP_C57BL6NJ_P0024560 Tgfb2 protein_coding protein_coding MGP_C57BL6NJ_T0024561.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199582702 199672103 - MGP_C57BL6NJ_P0024561 Tgfb2 protein_coding protein_coding MGP_C57BL6NJ_T0024562.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199584064 199610456 - Tgfb2 protein_coding retained_intron MGP_C57BL6NJ_T0024563.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199588198 199610522 - Tgfb2 protein_coding retained_intron MGP_C57BL6NJ_T0024564.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199592081 199630372 - Tgfb2 protein_coding processed_transcript MGP_C57BL6NJ_T0024565.1 MGP_C57BL6NJ_G0017319.1 mouse_genomes_project 1 199654776 199670736 - Tgfb2 protein_coding processed_transcript MGP_C57BL6NJ_T0024063.1 MGP_C57BL6NJ_G0017192.1 mouse_genomes_project 1 184295406 184303606 + Tagln2 protein_coding retained_intron MGP_C57BL6NJ_T0024064.1 MGP_C57BL6NJ_G0017192.1 mouse_genomes_project 1 184295406 184305052 + MGP_C57BL6NJ_P0024064 Tagln2 protein_coding protein_coding MGP_C57BL6NJ_T0024065.1 MGP_C57BL6NJ_G0017192.1 mouse_genomes_project 1 184295604 184303524 + MGP_C57BL6NJ_P0024065 Tagln2 protein_coding protein_coding MGP_C57BL6NJ_T0024066.1 MGP_C57BL6NJ_G0017192.1 mouse_genomes_project 1 184296611 184304405 + MGP_C57BL6NJ_P0024066 Tagln2 protein_coding protein_coding MGP_C57BL6NJ_T0005893.1 MGP_C57BL6NJ_G0004946.1 mouse_genomes_project 1 57990364 58042948 + 9130227L01Rik lincRNA lincRNA MGP_C57BL6NJ_T0005894.1 MGP_C57BL6NJ_G0004946.1 mouse_genomes_project 1 58028343 58043178 + 9130227L01Rik lincRNA lincRNA MGP_C57BL6NJ_T0005946.1 MGP_C57BL6NJ_G0004985.1 mouse_genomes_project 1 76837621 76867854 + D530049I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0019544.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22640478 22701966 - Smap1 protein_coding processed_transcript MGP_C57BL6NJ_T0019545.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22641251 22714364 - MGP_C57BL6NJ_P0019545 Smap1 protein_coding protein_coding MGP_C57BL6NJ_T0019546.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22641257 22714501 - MGP_C57BL6NJ_P0019546 Smap1 protein_coding protein_coding MGP_C57BL6NJ_T0019547.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22641810 22643410 - Smap1 protein_coding processed_transcript MGP_C57BL6NJ_T0019548.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22643912 22663562 - Smap1 protein_coding processed_transcript MGP_C57BL6NJ_T0019549.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22644165 22701933 - Smap1 protein_coding processed_transcript MGP_C57BL6NJ_T0019550.1 MGP_C57BL6NJ_G0016277.1 mouse_genomes_project 1 22644427 22682477 - Smap1 protein_coding retained_intron MGP_C57BL6NJ_T0019820.1 MGP_C57BL6NJ_G0016326.1 mouse_genomes_project 1 37406267 37438267 + MGP_C57BL6NJ_P0019820 Cnga3 protein_coding protein_coding MGP_C57BL6NJ_T0019821.1 MGP_C57BL6NJ_G0016326.1 mouse_genomes_project 1 37410212 37460148 + MGP_C57BL6NJ_P0019821 Cnga3 protein_coding protein_coding MGP_C57BL6NJ_T0019822.1 MGP_C57BL6NJ_G0016326.1 mouse_genomes_project 1 37410212 37460148 + MGP_C57BL6NJ_P0019822 Cnga3 protein_coding protein_coding MGP_C57BL6NJ_T0019823.1 MGP_C57BL6NJ_G0016326.1 mouse_genomes_project 1 37411038 37461348 + MGP_C57BL6NJ_P0019823 Cnga3 protein_coding protein_coding MGP_C57BL6NJ_T0102647.1 MGP_C57BL6NJ_G0040442.1 mouse_genomes_project 1 79025873 79048301 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102683.1 MGP_C57BL6NJ_G0040478.1 mouse_genomes_project 1 149137914 149186059 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000937.1 MGP_C57BL6NJ_G0000848.1 mouse_genomes_project 1 208270863 208271395 + TEC TEC MGP_C57BL6NJ_T0022116.1 MGP_C57BL6NJ_G0016785.1 mouse_genomes_project 1 117533886 117636258 - MGP_C57BL6NJ_P0022116 Cdh19 protein_coding protein_coding MGP_C57BL6NJ_T0022117.1 MGP_C57BL6NJ_G0016785.1 mouse_genomes_project 1 117603110 117636479 - Cdh19 protein_coding processed_transcript MGP_C57BL6NJ_T0012396.1 MGP_C57BL6NJ_G0010441.1 mouse_genomes_project 1 83883231 83886781 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012157.1 MGP_C57BL6NJ_G0010202.1 mouse_genomes_project 1 6291115 6291313 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000711.1 MGP_C57BL6NJ_G0000627.1 mouse_genomes_project 1 111972073 111976428 + TEC TEC MGP_C57BL6NJ_T0023936.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183103945 183110754 + MGP_C57BL6NJ_P0023936 Usf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023937.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183103945 183111787 + MGP_C57BL6NJ_P0023937 Usf1 protein_coding protein_coding MGP_C57BL6NJ_T0023938.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183103945 183109610 + MGP_C57BL6NJ_P0023938 Usf1 protein_coding protein_coding MGP_C57BL6NJ_T0023939.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183103958 183108370 + Usf1 protein_coding processed_transcript MGP_C57BL6NJ_T0023940.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183103966 183109989 + Usf1 protein_coding retained_intron MGP_C57BL6NJ_T0023941.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183104006 183108246 + Usf1 protein_coding retained_intron MGP_C57BL6NJ_T0023942.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183104016 183111402 + MGP_C57BL6NJ_P0023942 Usf1 protein_coding protein_coding MGP_C57BL6NJ_T0023943.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183104313 183111388 + MGP_C57BL6NJ_P0023943 Usf1 protein_coding protein_coding MGP_C57BL6NJ_T0023944.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183109962 183110563 + Usf1 protein_coding retained_intron MGP_C57BL6NJ_T0023945.1 MGP_C57BL6NJ_G0017163.1 mouse_genomes_project 1 183110092 183111064 + Usf1 protein_coding retained_intron MGP_C57BL6NJ_T0023256.1 MGP_C57BL6NJ_G0017024.1 mouse_genomes_project 1 166708337 166761059 - MGP_C57BL6NJ_P0023256 Tdrd5 protein_coding protein_coding MGP_C57BL6NJ_T0023257.1 MGP_C57BL6NJ_G0017024.1 mouse_genomes_project 1 166708339 166760743 - MGP_C57BL6NJ_P0023257 Tdrd5 protein_coding protein_coding MGP_C57BL6NJ_T0023258.1 MGP_C57BL6NJ_G0017024.1 mouse_genomes_project 1 166712832 166716570 - Tdrd5 protein_coding processed_transcript MGP_C57BL6NJ_T0023259.1 MGP_C57BL6NJ_G0017024.1 mouse_genomes_project 1 166720067 166727432 - Tdrd5 protein_coding retained_intron MGP_C57BL6NJ_T0023260.1 MGP_C57BL6NJ_G0017024.1 mouse_genomes_project 1 166750090 166761001 - MGP_C57BL6NJ_P0023260 Tdrd5 protein_coding protein_coding MGP_C57BL6NJ_T0006030.1 MGP_C57BL6NJ_G0005054.1 mouse_genomes_project 1 120755415 120838111 - 9330185C12Rik lincRNA lincRNA MGP_C57BL6NJ_T0102680.1 MGP_C57BL6NJ_G0040475.1 mouse_genomes_project 1 140396831 140397617 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012376.1 MGP_C57BL6NJ_G0010421.1 mouse_genomes_project 1 72408860 72409611 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024510.1 MGP_C57BL6NJ_G0017306.1 mouse_genomes_project 1 196756654 196782725 + MGP_C57BL6NJ_P0024510 Dusp10 protein_coding protein_coding MGP_C57BL6NJ_T0024513.1 MGP_C57BL6NJ_G0017306.1 mouse_genomes_project 1 196779862 196830431 + MGP_C57BL6NJ_P0024513 Dusp10 protein_coding protein_coding MGP_C57BL6NJ_T0012566.1 MGP_C57BL6NJ_G0010611.1 mouse_genomes_project 1 154594537 154595530 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020357.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59969418 60081593 + MGP_C57BL6NJ_P0020357 Spats2l protein_coding protein_coding MGP_C57BL6NJ_T0020358.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59969505 60075549 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0020359.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59969557 60097934 + MGP_C57BL6NJ_P0020359 Spats2l protein_coding protein_coding MGP_C57BL6NJ_T0020360.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59969675 59995693 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0020361.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59969856 60081661 + MGP_C57BL6NJ_P0020361 Spats2l protein_coding protein_coding MGP_C57BL6NJ_T0020362.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59970000 60135087 + MGP_C57BL6NJ_P0020362 Spats2l protein_coding protein_coding MGP_C57BL6NJ_T0020363.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59970146 60052705 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0020364.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59970168 60027465 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0020365.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59970173 59994835 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0020366.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 59992926 60146324 + MGP_C57BL6NJ_P0020366 Spats2l protein_coding protein_coding MGP_C57BL6NJ_T0020367.1 MGP_C57BL6NJ_G0016433.1 mouse_genomes_project 1 60097895 60140303 + Spats2l protein_coding retained_intron MGP_C57BL6NJ_T0021364.1 MGP_C57BL6NJ_G0016612.1 mouse_genomes_project 1 87218214 87245657 - MGP_C57BL6NJ_P0021364 Slc19a3 protein_coding protein_coding MGP_C57BL6NJ_T0021365.1 MGP_C57BL6NJ_G0016612.1 mouse_genomes_project 1 87218215 87226389 - Slc19a3 protein_coding processed_transcript MGP_C57BL6NJ_T0021366.1 MGP_C57BL6NJ_G0016612.1 mouse_genomes_project 1 87219491 87245640 - MGP_C57BL6NJ_P0021366 Slc19a3 protein_coding protein_coding MGP_C57BL6NJ_T0009749.1 MGP_C57BL6NJ_G0007834.1 mouse_genomes_project 1 197637017 197637099 - Mir1981 miRNA miRNA MGP_C57BL6NJ_T0012401.1 MGP_C57BL6NJ_G0010446.1 mouse_genomes_project 1 85610518 85614742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005929.1 MGP_C57BL6NJ_G0004974.1 mouse_genomes_project 1 70928682 70930203 + Gm15671 lincRNA lincRNA MGP_C57BL6NJ_T0021528.1 MGP_C57BL6NJ_G0016649.1 mouse_genomes_project 1 91780389 91783994 - MGP_C57BL6NJ_P0021528 Alpi protein_coding protein_coding MGP_C57BL6NJ_T0012338.1 MGP_C57BL6NJ_G0010383.1 mouse_genomes_project 1 62687018 62687245 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102665.1 MGP_C57BL6NJ_G0040460.1 mouse_genomes_project 1 108161146 108162625 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0023229.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166303234 166426041 - MGP_C57BL6NJ_P0023229 Cep350 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0023230.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166303240 166441746 - MGP_C57BL6NJ_P0023230 Cep350 protein_coding protein_coding MGP_C57BL6NJ_T0023231.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166306809 166319650 - Cep350 protein_coding processed_transcript MGP_C57BL6NJ_T0023232.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166321604 166345413 - Cep350 protein_coding processed_transcript MGP_C57BL6NJ_T0023233.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166327010 166344202 - Cep350 protein_coding processed_transcript MGP_C57BL6NJ_T0023234.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166399388 166441381 - MGP_C57BL6NJ_P0023234 Cep350 protein_coding protein_coding MGP_C57BL6NJ_T0023235.1 MGP_C57BL6NJ_G0017020.1 mouse_genomes_project 1 166438468 166441675 - Cep350 protein_coding retained_intron MGP_C57BL6NJ_T0003127.1 MGP_C57BL6NJ_G0002922.1 mouse_genomes_project 1 200358377 200389780 - Gm38155 antisense antisense MGP_C57BL6NJ_T0019542.1 MGP_C57BL6NJ_G0016276.1 mouse_genomes_project 1 22547771 22609574 + MGP_C57BL6NJ_P0019542 B3gat2 protein_coding protein_coding MGP_C57BL6NJ_T0019543.1 MGP_C57BL6NJ_G0016276.1 mouse_genomes_project 1 22548395 22641185 + MGP_C57BL6NJ_P0019543 B3gat2 protein_coding protein_coding MGP_C57BL6NJ_T0012313.1 MGP_C57BL6NJ_G0010358.1 mouse_genomes_project 1 54227841 54228304 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017512.1 MGP_C57BL6NJ_G0015510.1 mouse_genomes_project 1 156412935 156418857 - processed_transcript antisense MGP_C57BL6NJ_T0017513.1 MGP_C57BL6NJ_G0015510.1 mouse_genomes_project 1 156417548 156423747 - processed_transcript TEC MGP_C57BL6NJ_T0019808.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37194550 37252522 + MGP_C57BL6NJ_P0019808 Vwa3b protein_coding protein_coding MGP_C57BL6NJ_T0019809.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37197257 37237746 + MGP_C57BL6NJ_P0019809 Vwa3b protein_coding non_stop_decay MGP_C57BL6NJ_T0019810.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37197269 37252521 + MGP_C57BL6NJ_P0019810 Vwa3b protein_coding protein_coding MGP_C57BL6NJ_T0019811.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37197337 37252251 + MGP_C57BL6NJ_P0019811 Vwa3b protein_coding protein_coding MGP_C57BL6NJ_T0019812.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37204570 37378012 + MGP_C57BL6NJ_P0019812 Vwa3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019813.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37204616 37376641 + MGP_C57BL6NJ_P0019813 Vwa3b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019814.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37204616 37374187 + MGP_C57BL6NJ_P0019814 Vwa3b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019815.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37276696 37285239 + Vwa3b protein_coding retained_intron MGP_C57BL6NJ_T0019816.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37276833 37307513 + Vwa3b protein_coding processed_transcript MGP_C57BL6NJ_T0019817.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37315734 37323184 + MGP_C57BL6NJ_P0019817 Vwa3b protein_coding protein_coding MGP_C57BL6NJ_T0019818.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37339224 37379008 + MGP_C57BL6NJ_P0019818 Vwa3b protein_coding protein_coding MGP_C57BL6NJ_T0019819.1 MGP_C57BL6NJ_G0016325.1 mouse_genomes_project 1 37378257 37379016 + Vwa3b protein_coding retained_intron MGP_C57BL6NJ_T0000524.1 MGP_C57BL6NJ_G0000443.1 mouse_genomes_project 1 15117575 15118402 + TEC TEC MGP_C57BL6NJ_T0012535.1 MGP_C57BL6NJ_G0010580.1 mouse_genomes_project 1 136722853 136723161 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017465.1 MGP_C57BL6NJ_G0015493.1 mouse_genomes_project 1 65783430 65790732 + Platr12 processed_transcript antisense MGP_C57BL6NJ_T0017466.1 MGP_C57BL6NJ_G0015493.1 mouse_genomes_project 1 65783825 65791085 + Platr12 processed_transcript lincRNA MGP_C57BL6NJ_T0009746.1 MGP_C57BL6NJ_G0007831.1 mouse_genomes_project 1 189070164 189070244 + Gm25993 miRNA miRNA MGP_C57BL6NJ_T0002948.1 MGP_C57BL6NJ_G0002786.1 mouse_genomes_project 1 52868963 52987050 - 9330175M20Rik antisense antisense MGP_C57BL6NJ_T0012265.1 MGP_C57BL6NJ_G0010310.1 mouse_genomes_project 1 40747056 40747741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019758.1 MGP_C57BL6NJ_G0016315.1 mouse_genomes_project 1 36594718 36631797 + MGP_C57BL6NJ_P0019758 Cnnm4 protein_coding protein_coding MGP_C57BL6NJ_T0019759.1 MGP_C57BL6NJ_G0016315.1 mouse_genomes_project 1 36595059 36596431 + Cnnm4 protein_coding retained_intron MGP_C57BL6NJ_T0022745.1 MGP_C57BL6NJ_G0016925.1 mouse_genomes_project 1 144085303 144093322 - Timm17a protein_coding retained_intron MGP_C57BL6NJ_T0022746.1 MGP_C57BL6NJ_G0016925.1 mouse_genomes_project 1 144085405 144099365 - MGP_C57BL6NJ_P0022746 Timm17a protein_coding protein_coding MGP_C57BL6NJ_T0022747.1 MGP_C57BL6NJ_G0016925.1 mouse_genomes_project 1 144092617 144094823 - MGP_C57BL6NJ_P0022747 Timm17a protein_coding protein_coding MGP_C57BL6NJ_T0024463.1 MGP_C57BL6NJ_G0017297.1 mouse_genomes_project 1 195497353 195499408 - MGP_C57BL6NJ_P0024463 Ccdc185 protein_coding protein_coding MGP_C57BL6NJ_T0012435.1 MGP_C57BL6NJ_G0010480.1 mouse_genomes_project 1 96396243 96397135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000738.1 MGP_C57BL6NJ_G0000654.1 mouse_genomes_project 1 134068652 134069974 - TEC TEC MGP_C57BL6NJ_T0002961.1 MGP_C57BL6NJ_G0002796.1 mouse_genomes_project 1 61853201 61855620 - 1700122D07Rik antisense antisense MGP_C57BL6NJ_T0009732.1 MGP_C57BL6NJ_G0007817.1 mouse_genomes_project 1 170095622 170095688 + Mir1843b miRNA miRNA MGP_C57BL6NJ_T0012519.1 MGP_C57BL6NJ_G0010564.1 mouse_genomes_project 1 129102486 129102951 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021786.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96642869 96660648 + MGP_C57BL6NJ_P0021786 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0021787.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96642892 96649277 + Asb1 protein_coding processed_transcript MGP_C57BL6NJ_T0021788.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96643039 96664149 + MGP_C57BL6NJ_P0021788 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0021789.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96643057 96659384 + MGP_C57BL6NJ_P0021789 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0021790.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96643057 96659384 + MGP_C57BL6NJ_P0021790 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0021791.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96643405 96659677 + MGP_C57BL6NJ_P0021791 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0021792.1 MGP_C57BL6NJ_G0016708.1 mouse_genomes_project 1 96643405 96655105 + MGP_C57BL6NJ_P0021792 Asb1 protein_coding protein_coding MGP_C57BL6NJ_T0012205.1 MGP_C57BL6NJ_G0010250.1 mouse_genomes_project 1 20694036 20694588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012391.1 MGP_C57BL6NJ_G0010436.1 mouse_genomes_project 1 81272135 81272427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100855.1 MGP_C57BL6NJ_G0038901.1 mouse_genomes_project 1 21984295 21984416 + Gm24176 snoRNA snoRNA MGP_C57BL6NJ_T0100842.1 MGP_C57BL6NJ_G0038888.1 mouse_genomes_project 1 4640065 4640195 + Gm23274 snoRNA snoRNA MGP_C57BL6NJ_T0020178.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53844332 53930642 - MGP_C57BL6NJ_P0020178 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020179.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53846825 53929715 - MGP_C57BL6NJ_P0020179 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020180.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53847012 53873746 - MGP_C57BL6NJ_P0020180 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020181.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53847148 53849860 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020182.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53847166 53850030 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020183.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53849331 53873747 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020184.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53864978 53930651 - MGP_C57BL6NJ_P0020184 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020185.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53866154 53891741 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020186.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53866154 53907445 - MGP_C57BL6NJ_P0020186 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020187.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53870520 53873746 - MGP_C57BL6NJ_P0020187 Gls protein_coding protein_coding MGP_C57BL6NJ_T0020188.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53872304 53888631 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020189.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53874036 53910830 - Gls protein_coding processed_transcript MGP_C57BL6NJ_T0020190.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53887734 53891633 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020191.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53895428 53910830 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020192.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53896439 53909769 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020193.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53898559 53911179 - Gls protein_coding retained_intron MGP_C57BL6NJ_T0020194.1 MGP_C57BL6NJ_G0016397.1 mouse_genomes_project 1 53909753 53930230 - Gls protein_coding processed_transcript MGP_C57BL6NJ_T0006118.1 MGP_C57BL6NJ_G0005124.1 mouse_genomes_project 1 169869918 169909459 + 4930562F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0020694.1 MGP_C57BL6NJ_G0016489.1 mouse_genomes_project 1 67422213 67429407 - MGP_C57BL6NJ_P0020694 Fzd5 protein_coding protein_coding MGP_C57BL6NJ_T0020695.1 MGP_C57BL6NJ_G0016489.1 mouse_genomes_project 1 67426124 67429405 - MGP_C57BL6NJ_P0020695 Fzd5 protein_coding protein_coding MGP_C57BL6NJ_T0011511.1 MGP_C57BL6NJ_G0009596.1 mouse_genomes_project 1 103655736 103656048 + Gm25413 misc_RNA misc_RNA MGP_C57BL6NJ_T0012451.1 MGP_C57BL6NJ_G0010496.1 mouse_genomes_project 1 105623360 105623957 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012189.1 MGP_C57BL6NJ_G0010234.1 mouse_genomes_project 1 15651182 15651668 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019551.1 MGP_C57BL6NJ_G0016278.1 mouse_genomes_project 1 22811494 22821212 - MGP_C57BL6NJ_P0019551 Sdhaf4 protein_coding protein_coding MGP_C57BL6NJ_T0019552.1 MGP_C57BL6NJ_G0016278.1 mouse_genomes_project 1 22818521 22821186 - Sdhaf4 protein_coding processed_transcript MGP_C57BL6NJ_T0012591.1 MGP_C57BL6NJ_G0010636.1 mouse_genomes_project 1 165430013 165430224 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023932.1 MGP_C57BL6NJ_G0017162.1 mouse_genomes_project 1 183079779 183102941 + Arhgap30 protein_coding retained_intron MGP_C57BL6NJ_T0023933.1 MGP_C57BL6NJ_G0017162.1 mouse_genomes_project 1 183079779 183102883 + Arhgap30 protein_coding retained_intron MGP_C57BL6NJ_T0023934.1 MGP_C57BL6NJ_G0017162.1 mouse_genomes_project 1 183079779 183102883 + MGP_C57BL6NJ_P0023934 Arhgap30 protein_coding protein_coding MGP_C57BL6NJ_T0023935.1 MGP_C57BL6NJ_G0017162.1 mouse_genomes_project 1 183079824 183083612 + Arhgap30 protein_coding retained_intron MGP_C57BL6NJ_T0023255.1 MGP_C57BL6NJ_G0017023.1 mouse_genomes_project 1 166570581 166655764 - MGP_C57BL6NJ_P0023255 Fam163a protein_coding protein_coding MGP_C57BL6NJ_T0022350.1 MGP_C57BL6NJ_G0016834.1 mouse_genomes_project 1 136554661 136611708 - MGP_C57BL6NJ_P0022350 Dars protein_coding protein_coding MGP_C57BL6NJ_T0022351.1 MGP_C57BL6NJ_G0016834.1 mouse_genomes_project 1 136567849 136572446 - Dars protein_coding retained_intron MGP_C57BL6NJ_T0022352.1 MGP_C57BL6NJ_G0016834.1 mouse_genomes_project 1 136606466 136611717 - MGP_C57BL6NJ_P0022352 Dars protein_coding protein_coding MGP_C57BL6NJ_T0098922.1 MGP_C57BL6NJ_G0036986.1 mouse_genomes_project 1 30686496 30686634 - Gm27362 rRNA rRNA MGP_C57BL6NJ_T0021711.1 MGP_C57BL6NJ_G0016693.1 mouse_genomes_project 1 96002733 96038398 + MGP_C57BL6NJ_P0021711 Mlph protein_coding protein_coding MGP_C57BL6NJ_T0021712.1 MGP_C57BL6NJ_G0016693.1 mouse_genomes_project 1 96015327 96016081 + MGP_C57BL6NJ_P0021712 Mlph protein_coding protein_coding MGP_C57BL6NJ_T0021713.1 MGP_C57BL6NJ_G0016693.1 mouse_genomes_project 1 96026799 96027870 + Mlph protein_coding retained_intron MGP_C57BL6NJ_T0003026.1 MGP_C57BL6NJ_G0002844.1 mouse_genomes_project 1 139210305 139224417 - Gm15848 antisense antisense MGP_C57BL6NJ_T0003027.1 MGP_C57BL6NJ_G0002844.1 mouse_genomes_project 1 139210531 139221007 - Gm15848 antisense antisense MGP_C57BL6NJ_T0003028.1 MGP_C57BL6NJ_G0002844.1 mouse_genomes_project 1 139217733 139221037 - Gm15848 antisense antisense MGP_C57BL6NJ_T0021842.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98111971 98122035 + MGP_C57BL6NJ_P0021842 Rnpepl1 protein_coding protein_coding MGP_C57BL6NJ_T0021843.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98112013 98121766 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021844.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98112041 98114597 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021845.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98112309 98117931 + MGP_C57BL6NJ_P0021845 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021846.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98112397 98117127 + MGP_C57BL6NJ_P0021846 Rnpepl1 protein_coding protein_coding MGP_C57BL6NJ_T0021847.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98117037 98121766 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021848.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98117984 98121766 + MGP_C57BL6NJ_P0021848 Rnpepl1 protein_coding protein_coding MGP_C57BL6NJ_T0021849.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98117998 98120410 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021850.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98118205 98119267 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021851.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98118340 98120259 + MGP_C57BL6NJ_P0021851 Rnpepl1 protein_coding protein_coding MGP_C57BL6NJ_T0021852.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98118609 98120411 + Rnpepl1 protein_coding retained_intron MGP_C57BL6NJ_T0021853.1 MGP_C57BL6NJ_G0016725.1 mouse_genomes_project 1 98120807 98125578 + MGP_C57BL6NJ_P0021853 Rnpepl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100904.1 MGP_C57BL6NJ_G0038950.1 mouse_genomes_project 1 131143568 131143699 - Gm24791 snoRNA snoRNA MGP_C57BL6NJ_T0100848.1 MGP_C57BL6NJ_G0038894.1 mouse_genomes_project 1 13724735 13724847 - Gm25227 snoRNA snoRNA MGP_C57BL6NJ_T0021669.1 MGP_C57BL6NJ_G0016682.1 mouse_genomes_project 1 93293451 93306958 + MGP_C57BL6NJ_P0021669 Spp2 protein_coding protein_coding MGP_C57BL6NJ_T0021670.1 MGP_C57BL6NJ_G0016682.1 mouse_genomes_project 1 93293707 93312708 + MGP_C57BL6NJ_P0021670 Spp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000614.1 MGP_C57BL6NJ_G0000530.1 mouse_genomes_project 1 62298653 62304067 + TEC TEC MGP_C57BL6NJ_T0003090.1 MGP_C57BL6NJ_G0002893.1 mouse_genomes_project 1 178585596 178598447 + Gm37982 antisense antisense MGP_C57BL6NJ_T0019724.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408468 36421018 + MGP_C57BL6NJ_P0019724 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019725.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36420103 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019726.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36421029 + Arid5a protein_coding processed_transcript MGP_C57BL6NJ_T0019727.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36421702 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019728.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36422343 + MGP_C57BL6NJ_P0019728 Arid5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019729.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36425844 + MGP_C57BL6NJ_P0019729 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019730.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36419257 + MGP_C57BL6NJ_P0019730 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019731.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36422886 + MGP_C57BL6NJ_P0019731 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019732.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408489 36422341 + MGP_C57BL6NJ_P0019732 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019733.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408493 36414590 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019734.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408514 36418393 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019735.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36408568 36422341 + MGP_C57BL6NJ_P0019735 Arid5a protein_coding protein_coding MGP_C57BL6NJ_T0019736.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36417806 36419951 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019737.1 MGP_C57BL6NJ_G0016311.1 mouse_genomes_project 1 36418841 36419947 + Arid5a protein_coding retained_intron MGP_C57BL6NJ_T0019334.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7746250 7855590 - MGP_C57BL6NJ_P0019334 Arfgef1 protein_coding protein_coding MGP_C57BL6NJ_T0019335.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7747369 7750381 - Arfgef1 protein_coding retained_intron MGP_C57BL6NJ_T0019336.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7756686 7763812 - Arfgef1 protein_coding retained_intron MGP_C57BL6NJ_T0019337.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7765680 7769342 - Arfgef1 protein_coding retained_intron MGP_C57BL6NJ_T0019338.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7787736 7855590 - MGP_C57BL6NJ_P0019338 Arfgef1 protein_coding protein_coding MGP_C57BL6NJ_T0019339.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7829246 7830408 - Arfgef1 protein_coding retained_intron MGP_C57BL6NJ_T0019340.1 MGP_C57BL6NJ_G0016226.1 mouse_genomes_project 1 7829461 7834514 - Arfgef1 protein_coding retained_intron MGP_C57BL6NJ_T0005901.1 MGP_C57BL6NJ_G0004952.1 mouse_genomes_project 1 60719449 60728332 + Gm15834 lincRNA lincRNA MGP_C57BL6NJ_T0005902.1 MGP_C57BL6NJ_G0004952.1 mouse_genomes_project 1 60719453 60733254 + Gm15834 lincRNA lincRNA MGP_C57BL6NJ_T0005903.1 MGP_C57BL6NJ_G0004952.1 mouse_genomes_project 1 60719456 60739033 + Gm15834 lincRNA lincRNA MGP_C57BL6NJ_T0000641.1 MGP_C57BL6NJ_G0000557.1 mouse_genomes_project 1 71693972 71696341 - TEC TEC MGP_C57BL6NJ_T0011524.1 MGP_C57BL6NJ_G0009609.1 mouse_genomes_project 1 208806929 208807027 - Gm27940 misc_RNA misc_RNA MGP_C57BL6NJ_T0000748.1 MGP_C57BL6NJ_G0000664.1 mouse_genomes_project 1 137552464 137554951 + TEC TEC MGP_C57BL6NJ_T0002924.1 MGP_C57BL6NJ_G0002767.1 mouse_genomes_project 1 37312499 37313491 - Gm37020 antisense antisense MGP_C57BL6NJ_T0012658.1 MGP_C57BL6NJ_G0010703.1 mouse_genomes_project 1 196655239 196655386 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000523.1 MGP_C57BL6NJ_G0000442.1 mouse_genomes_project 1 14744650 14747630 + TEC TEC MGP_C57BL6NJ_T0005915.1 MGP_C57BL6NJ_G0004964.1 mouse_genomes_project 1 65678037 65679892 + Ino80dos lincRNA lincRNA MGP_C57BL6NJ_T0005916.1 MGP_C57BL6NJ_G0004964.1 mouse_genomes_project 1 65679039 65680263 + Ino80dos lincRNA lincRNA MGP_C57BL6NJ_T0005917.1 MGP_C57BL6NJ_G0004964.1 mouse_genomes_project 1 65679402 65734169 + Ino80dos lincRNA lincRNA MGP_C57BL6NJ_T0005918.1 MGP_C57BL6NJ_G0004964.1 mouse_genomes_project 1 65679671 65731558 + Ino80dos lincRNA lincRNA MGP_C57BL6NJ_T0022344.1 MGP_C57BL6NJ_G0016832.1 mouse_genomes_project 1 136464725 136516937 - MGP_C57BL6NJ_P0022344 Lct protein_coding protein_coding MGP_C57BL6NJ_T0022345.1 MGP_C57BL6NJ_G0016832.1 mouse_genomes_project 1 136467541 136472221 - Lct protein_coding retained_intron MGP_C57BL6NJ_T0000742.1 MGP_C57BL6NJ_G0000658.1 mouse_genomes_project 1 135516187 135516730 + TEC TEC MGP_C57BL6NJ_T0022682.1 MGP_C57BL6NJ_G0016911.1 mouse_genomes_project 1 143107651 143125589 + MGP_C57BL6NJ_P0022682 Adipor1 protein_coding protein_coding MGP_C57BL6NJ_T0022683.1 MGP_C57BL6NJ_G0016911.1 mouse_genomes_project 1 143107729 143125586 + MGP_C57BL6NJ_P0022683 Adipor1 protein_coding protein_coding MGP_C57BL6NJ_T0022684.1 MGP_C57BL6NJ_G0016911.1 mouse_genomes_project 1 143107744 143108214 + Adipor1 protein_coding processed_transcript MGP_C57BL6NJ_T0022685.1 MGP_C57BL6NJ_G0016911.1 mouse_genomes_project 1 143107837 143119155 + Adipor1 protein_coding retained_intron MGP_C57BL6NJ_T0021354.1 MGP_C57BL6NJ_G0016610.1 mouse_genomes_project 1 86904218 86916033 - MGP_C57BL6NJ_P0021354 Tm4sf20 protein_coding protein_coding MGP_C57BL6NJ_T0021355.1 MGP_C57BL6NJ_G0016610.1 mouse_genomes_project 1 86904971 86916033 - Tm4sf20 protein_coding processed_transcript MGP_C57BL6NJ_T0102126.1 MGP_C57BL6NJ_G0040170.1 mouse_genomes_project 1 122687452 122704991 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102127.1 MGP_C57BL6NJ_G0040170.1 mouse_genomes_project 1 122687867 122689054 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102128.1 MGP_C57BL6NJ_G0040170.1 mouse_genomes_project 1 122688295 122704996 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0000877.1 MGP_C57BL6NJ_G0000791.1 mouse_genomes_project 1 188162160 188163805 - TEC TEC MGP_C57BL6NJ_T0020008.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43541662 43598684 + MGP_C57BL6NJ_P0020008 Mrps9 protein_coding protein_coding MGP_C57BL6NJ_T0020009.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43541664 43592674 + Mrps9 protein_coding processed_transcript MGP_C57BL6NJ_T0020010.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43541664 43595008 + Mrps9 protein_coding processed_transcript MGP_C57BL6NJ_T0020011.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43541673 43573925 + Mrps9 protein_coding retained_intron MGP_C57BL6NJ_T0020012.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43552899 43592123 + Mrps9 protein_coding retained_intron MGP_C57BL6NJ_T0020013.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43580731 43598678 + MGP_C57BL6NJ_P0020013 Mrps9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020014.1 MGP_C57BL6NJ_G0016366.1 mouse_genomes_project 1 43596051 43598678 + Mrps9 protein_coding retained_intron MGP_C57BL6NJ_T0024530.1 MGP_C57BL6NJ_G0017311.1 mouse_genomes_project 1 197690678 197703217 - MGP_C57BL6NJ_P0024530 C130074G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0019896.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38306728 38363299 - MGP_C57BL6NJ_P0019896 Rev1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019897.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38306729 38386563 - MGP_C57BL6NJ_P0019897 Rev1 protein_coding protein_coding MGP_C57BL6NJ_T0019898.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38306739 38343077 - Rev1 protein_coding retained_intron MGP_C57BL6NJ_T0019899.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38307243 38308194 - Rev1 protein_coding retained_intron MGP_C57BL6NJ_T0019900.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38310465 38311649 - Rev1 protein_coding retained_intron MGP_C57BL6NJ_T0019901.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38321527 38338728 - MGP_C57BL6NJ_P0019901 Rev1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019902.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38326439 38340599 - MGP_C57BL6NJ_P0019902 Rev1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019903.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38329593 38336306 - Rev1 protein_coding processed_transcript MGP_C57BL6NJ_T0019904.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38334022 38338794 - Rev1 protein_coding retained_intron MGP_C57BL6NJ_T0019905.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38347075 38385202 - MGP_C57BL6NJ_P0019905 Rev1 protein_coding protein_coding MGP_C57BL6NJ_T0019906.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38352322 38385218 - MGP_C57BL6NJ_P0019906 Rev1 protein_coding protein_coding MGP_C57BL6NJ_T0019907.1 MGP_C57BL6NJ_G0016340.1 mouse_genomes_project 1 38361096 38386702 - MGP_C57BL6NJ_P0019907 Rev1 protein_coding protein_coding MGP_C57BL6NJ_T0006131.1 MGP_C57BL6NJ_G0005134.1 mouse_genomes_project 1 175640157 175651795 + Gm26685 lincRNA lincRNA MGP_C57BL6NJ_T0017475.1 MGP_C57BL6NJ_G0015498.1 mouse_genomes_project 1 90954385 90962776 + C130036L24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017476.1 MGP_C57BL6NJ_G0015498.1 mouse_genomes_project 1 90954395 90968474 + C130036L24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017477.1 MGP_C57BL6NJ_G0015498.1 mouse_genomes_project 1 90954399 90957584 + C130036L24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019705.1 MGP_C57BL6NJ_G0016307.1 mouse_genomes_project 1 34789369 34815690 + MGP_C57BL6NJ_P0019705 Plekhb2 protein_coding protein_coding MGP_C57BL6NJ_T0019706.1 MGP_C57BL6NJ_G0016307.1 mouse_genomes_project 1 34789385 34821300 + MGP_C57BL6NJ_P0019706 Plekhb2 protein_coding protein_coding MGP_C57BL6NJ_T0019707.1 MGP_C57BL6NJ_G0016307.1 mouse_genomes_project 1 34792245 34803842 + MGP_C57BL6NJ_P0019707 Plekhb2 protein_coding protein_coding MGP_C57BL6NJ_T0019708.1 MGP_C57BL6NJ_G0016307.1 mouse_genomes_project 1 34819375 34821297 + Plekhb2 protein_coding processed_transcript MGP_C57BL6NJ_T0021465.1 MGP_C57BL6NJ_G0016634.1 mouse_genomes_project 1 90607462 90616132 + MGP_C57BL6NJ_P0021465 2810459M11Rik protein_coding protein_coding MGP_C57BL6NJ_T0021466.1 MGP_C57BL6NJ_G0016634.1 mouse_genomes_project 1 90607462 90614029 + MGP_C57BL6NJ_P0021466 2810459M11Rik protein_coding protein_coding MGP_C57BL6NJ_T0003018.1 MGP_C57BL6NJ_G0002837.1 mouse_genomes_project 1 126959140 126965758 - Gm27184 antisense antisense MGP_C57BL6NJ_T0000489.1 MGP_C57BL6NJ_G0000408.1 mouse_genomes_project 1 2062303 2063414 - TEC TEC MGP_C57BL6NJ_T0012415.1 MGP_C57BL6NJ_G0010460.1 mouse_genomes_project 1 91083584 91083932 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102692.1 MGP_C57BL6NJ_G0040487.1 mouse_genomes_project 1 185693642 185696520 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098940.1 MGP_C57BL6NJ_G0037004.1 mouse_genomes_project 1 172469938 172470056 - Gm25488 rRNA rRNA MGP_C57BL6NJ_T0000557.1 MGP_C57BL6NJ_G0000474.1 mouse_genomes_project 1 30412306 30415324 - TEC TEC MGP_C57BL6NJ_T0012202.1 MGP_C57BL6NJ_G0010247.1 mouse_genomes_project 1 19956700 19956928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006135.1 MGP_C57BL6NJ_G0005138.1 mouse_genomes_project 1 175852135 175859230 - Gm36945 lincRNA lincRNA MGP_C57BL6NJ_T0006136.1 MGP_C57BL6NJ_G0005138.1 mouse_genomes_project 1 175852312 175859258 - Gm36945 lincRNA lincRNA MGP_C57BL6NJ_T0005853.1 MGP_C57BL6NJ_G0004922.1 mouse_genomes_project 1 41675978 41689614 - 4930448I06Rik lincRNA lincRNA MGP_C57BL6NJ_T0024369.1 MGP_C57BL6NJ_G0017275.1 mouse_genomes_project 1 193336648 193357638 + MGP_C57BL6NJ_P0024369 Sde2 protein_coding protein_coding MGP_C57BL6NJ_T0024370.1 MGP_C57BL6NJ_G0017275.1 mouse_genomes_project 1 193351618 193355778 + Sde2 protein_coding retained_intron MGP_C57BL6NJ_T0006202.1 MGP_C57BL6NJ_G0005188.1 mouse_genomes_project 1 199096710 199147834 + Gm37134 lincRNA lincRNA MGP_C57BL6NJ_T0017453.1 MGP_C57BL6NJ_G0015487.1 mouse_genomes_project 1 39891087 39895510 - Gm15832 processed_transcript processed_transcript MGP_C57BL6NJ_T0005805.1 MGP_C57BL6NJ_G0004883.1 mouse_genomes_project 1 4898164 4921780 + Gm30414 lincRNA lincRNA MGP_C57BL6NJ_T0009665.1 MGP_C57BL6NJ_G0007750.1 mouse_genomes_project 1 33977039 33977112 + Mir6896 miRNA miRNA MGP_C57BL6NJ_T0019520.1 MGP_C57BL6NJ_G0016271.1 mouse_genomes_project 1 19907769 19913112 + MGP_C57BL6NJ_P0019520 protein_coding protein_coding MGP_C57BL6NJ_T0020028.1 MGP_C57BL6NJ_G0016369.1 mouse_genomes_project 1 43799432 43816655 + MGP_C57BL6NJ_P0020028 AI597479 protein_coding protein_coding MGP_C57BL6NJ_T0023787.1 MGP_C57BL6NJ_G0017133.1 mouse_genomes_project 1 181835729 181839052 + MGP_C57BL6NJ_P0023787 1700015E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0023527.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173831892 173869221 - MGP_C57BL6NJ_P0023527 Fmo1 protein_coding protein_coding MGP_C57BL6NJ_T0023528.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173832098 173832805 - Fmo1 protein_coding processed_transcript MGP_C57BL6NJ_T0023529.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173832381 173838356 - Fmo1 protein_coding processed_transcript MGP_C57BL6NJ_T0023530.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173835250 173838356 - Fmo1 protein_coding retained_intron MGP_C57BL6NJ_T0023531.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173837487 173862120 - MGP_C57BL6NJ_P0023531 Fmo1 protein_coding protein_coding MGP_C57BL6NJ_T0023532.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173839953 173861978 - MGP_C57BL6NJ_P0023532 Fmo1 protein_coding protein_coding MGP_C57BL6NJ_T0023533.1 MGP_C57BL6NJ_G0017068.1 mouse_genomes_project 1 173839979 173861872 - MGP_C57BL6NJ_P0023533 Fmo1 protein_coding protein_coding MGP_C57BL6NJ_T0012468.1 MGP_C57BL6NJ_G0010513.1 mouse_genomes_project 1 111830007 111830282 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020532.1 MGP_C57BL6NJ_G0016461.1 mouse_genomes_project 1 62112677 62245009 + MGP_C57BL6NJ_P0020532 Bmpr2 protein_coding protein_coding MGP_C57BL6NJ_T0020533.1 MGP_C57BL6NJ_G0016461.1 mouse_genomes_project 1 62113963 62234924 + MGP_C57BL6NJ_P0020533 Bmpr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020534.1 MGP_C57BL6NJ_G0016461.1 mouse_genomes_project 1 62209195 62211271 + Bmpr2 protein_coding retained_intron MGP_C57BL6NJ_T0020535.1 MGP_C57BL6NJ_G0016461.1 mouse_genomes_project 1 62210396 62215115 + Bmpr2 protein_coding retained_intron MGP_C57BL6NJ_T0012403.1 MGP_C57BL6NJ_G0010448.1 mouse_genomes_project 1 85873751 85874457 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003057.1 MGP_C57BL6NJ_G0002867.1 mouse_genomes_project 1 161462295 161466808 - Gm10138 antisense antisense MGP_C57BL6NJ_T0003058.1 MGP_C57BL6NJ_G0002867.1 mouse_genomes_project 1 161465471 161467957 - Gm10138 antisense antisense MGP_C57BL6NJ_T0003059.1 MGP_C57BL6NJ_G0002867.1 mouse_genomes_project 1 161467094 161467462 - Gm10138 antisense pseudogene MGP_C57BL6NJ_T0023953.1 MGP_C57BL6NJ_G0017167.1 mouse_genomes_project 1 183222738 183235039 - MGP_C57BL6NJ_P0023953 Itln1 protein_coding protein_coding MGP_C57BL6NJ_T0023954.1 MGP_C57BL6NJ_G0017167.1 mouse_genomes_project 1 183228920 183231502 - MGP_C57BL6NJ_P0023954 Itln1 protein_coding protein_coding MGP_C57BL6NJ_T0000755.1 MGP_C57BL6NJ_G0000671.1 mouse_genomes_project 1 138846603 138848151 + TEC TEC MGP_C57BL6NJ_T0012505.1 MGP_C57BL6NJ_G0010550.1 mouse_genomes_project 1 125541173 125542336 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012178.1 MGP_C57BL6NJ_G0010223.1 mouse_genomes_project 1 11297508 11298152 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022030.1 MGP_C57BL6NJ_G0016762.1 mouse_genomes_project 1 105605778 106364352 + MGP_C57BL6NJ_P0022030 Cntnap5b protein_coding protein_coding MGP_C57BL6NJ_T0022031.1 MGP_C57BL6NJ_G0016762.1 mouse_genomes_project 1 105953382 106365445 + MGP_C57BL6NJ_P0022031 Cntnap5b protein_coding protein_coding MGP_C57BL6NJ_T0022032.1 MGP_C57BL6NJ_G0016762.1 mouse_genomes_project 1 106125554 106250088 + Cntnap5b protein_coding processed_transcript MGP_C57BL6NJ_T0099623.1 MGP_C57BL6NJ_G0037669.1 mouse_genomes_project 1 132373320 132373424 + Gm25578 snRNA snRNA MGP_C57BL6NJ_T0012257.1 MGP_C57BL6NJ_G0010302.1 mouse_genomes_project 1 36019413 36020317 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019940.1 MGP_C57BL6NJ_G0016349.1 mouse_genomes_project 1 39873014 39890407 + MGP_C57BL6NJ_P0019940 Cnot11 protein_coding protein_coding MGP_C57BL6NJ_T0019941.1 MGP_C57BL6NJ_G0016349.1 mouse_genomes_project 1 39873824 39890391 + MGP_C57BL6NJ_P0019941 Cnot11 protein_coding protein_coding MGP_C57BL6NJ_T0019942.1 MGP_C57BL6NJ_G0016349.1 mouse_genomes_project 1 39876267 39888725 + Cnot11 protein_coding retained_intron MGP_C57BL6NJ_T0019943.1 MGP_C57BL6NJ_G0016349.1 mouse_genomes_project 1 39878056 39887643 + MGP_C57BL6NJ_P0019943 Cnot11 protein_coding protein_coding MGP_C57BL6NJ_T0000932.1 MGP_C57BL6NJ_G0000843.1 mouse_genomes_project 1 206828486 206829114 + TEC TEC MGP_C57BL6NJ_T0021986.1 MGP_C57BL6NJ_G0016753.1 mouse_genomes_project 1 100827564 100850130 + MGP_C57BL6NJ_P0021986 Fam174a protein_coding protein_coding MGP_C57BL6NJ_T0021987.1 MGP_C57BL6NJ_G0016753.1 mouse_genomes_project 1 100827569 100841887 + MGP_C57BL6NJ_P0021987 Fam174a protein_coding protein_coding MGP_C57BL6NJ_T0023796.1 MGP_C57BL6NJ_G0017135.1 mouse_genomes_project 1 182263894 182442256 - MGP_C57BL6NJ_P0023796 Atf6 protein_coding protein_coding MGP_C57BL6NJ_T0023797.1 MGP_C57BL6NJ_G0017135.1 mouse_genomes_project 1 182355341 182357446 - Atf6 protein_coding retained_intron MGP_C57BL6NJ_T0012132.1 MGP_C57BL6NJ_G0010177.1 mouse_genomes_project 1 1860147 1860778 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024263.1 MGP_C57BL6NJ_G0017257.1 mouse_genomes_project 1 190847564 191044787 + Kif26b protein_coding retained_intron MGP_C57BL6NJ_T0024264.1 MGP_C57BL6NJ_G0017257.1 mouse_genomes_project 1 190847564 191283766 + MGP_C57BL6NJ_P0024264 Kif26b protein_coding protein_coding MGP_C57BL6NJ_T0024265.1 MGP_C57BL6NJ_G0017257.1 mouse_genomes_project 1 191137696 191277421 + MGP_C57BL6NJ_P0024265 Kif26b protein_coding protein_coding MGP_C57BL6NJ_T0012574.1 MGP_C57BL6NJ_G0010619.1 mouse_genomes_project 1 158854587 158854812 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012673.1 MGP_C57BL6NJ_G0010718.1 mouse_genomes_project 1 206499895 206500010 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020726.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910532 67943936 + Pikfyve protein_coding retained_intron MGP_C57BL6NJ_T0020727.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910538 67988728 + MGP_C57BL6NJ_P0020727 Pikfyve protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020728.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910542 67964722 + Pikfyve protein_coding retained_intron MGP_C57BL6NJ_T0020729.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910543 67930439 + Pikfyve protein_coding retained_intron MGP_C57BL6NJ_T0020730.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910545 67944404 + Pikfyve protein_coding processed_transcript MGP_C57BL6NJ_T0020731.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910551 68023216 + MGP_C57BL6NJ_P0020731 Pikfyve protein_coding protein_coding MGP_C57BL6NJ_T0020732.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910553 67972707 + Pikfyve protein_coding retained_intron MGP_C57BL6NJ_T0020733.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910562 67930143 + MGP_C57BL6NJ_P0020733 Pikfyve protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020734.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910573 68021325 + MGP_C57BL6NJ_P0020734 Pikfyve protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020735.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67910599 68018533 + MGP_C57BL6NJ_P0020735 Pikfyve protein_coding protein_coding MGP_C57BL6NJ_T0020736.1 MGP_C57BL6NJ_G0016500.1 mouse_genomes_project 1 67934715 67954492 + Pikfyve protein_coding retained_intron MGP_C57BL6NJ_T0019164.1 MGP_C57BL6NJ_G0016197.1 mouse_genomes_project 1 236100 246546 - Xkr4 protein_coding processed_transcript MGP_C57BL6NJ_T0019165.1 MGP_C57BL6NJ_G0016197.1 mouse_genomes_project 1 236722 245834 - Xkr4 protein_coding processed_transcript MGP_C57BL6NJ_T0019166.1 MGP_C57BL6NJ_G0016197.1 mouse_genomes_project 1 244683 739323 - MGP_C57BL6NJ_P0019166 Xkr4 protein_coding protein_coding MGP_C57BL6NJ_T0021454.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90577765 90585619 + Spata3 protein_coding processed_transcript MGP_C57BL6NJ_T0021455.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90579642 90590198 + Spata3 protein_coding processed_transcript MGP_C57BL6NJ_T0021456.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582891 90590908 + MGP_C57BL6NJ_P0021456 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021457.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582892 90585616 + MGP_C57BL6NJ_P0021457 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021458.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582895 90585618 + MGP_C57BL6NJ_P0021458 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021459.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582895 90590908 + MGP_C57BL6NJ_P0021459 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021460.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582895 90588128 + MGP_C57BL6NJ_P0021460 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021461.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582902 90590871 + MGP_C57BL6NJ_P0021461 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021462.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582909 90590212 + MGP_C57BL6NJ_P0021462 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021463.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90582910 90585619 + MGP_C57BL6NJ_P0021463 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0021464.1 MGP_C57BL6NJ_G0016633.1 mouse_genomes_project 1 90583054 90590214 + MGP_C57BL6NJ_P0021464 Spata3 protein_coding protein_coding MGP_C57BL6NJ_T0022089.1 MGP_C57BL6NJ_G0016776.1 mouse_genomes_project 1 113395181 113409172 - MGP_C57BL6NJ_P0022089 Serpinb3a protein_coding protein_coding MGP_C57BL6NJ_T0022090.1 MGP_C57BL6NJ_G0016776.1 mouse_genomes_project 1 113395199 113409680 - MGP_C57BL6NJ_P0022090 Serpinb3a protein_coding protein_coding MGP_C57BL6NJ_T0019261.1 MGP_C57BL6NJ_G0016215.1 mouse_genomes_project 1 7111624 7113779 + MGP_C57BL6NJ_P0019261 Rrs1 protein_coding protein_coding MGP_C57BL6NJ_T0024520.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197626472 197662944 - MGP_C57BL6NJ_P0024520 Marc2 protein_coding protein_coding MGP_C57BL6NJ_T0024521.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197627082 197644379 - Marc2 protein_coding processed_transcript MGP_C57BL6NJ_T0024522.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197627086 197637646 - Marc2 protein_coding retained_intron MGP_C57BL6NJ_T0024523.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197627096 197644164 - Marc2 protein_coding processed_transcript MGP_C57BL6NJ_T0024524.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197627098 197634083 - Marc2 protein_coding retained_intron MGP_C57BL6NJ_T0024525.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197627164 197644154 - Marc2 protein_coding processed_transcript MGP_C57BL6NJ_T0024526.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197633875 197662871 - Marc2 protein_coding processed_transcript MGP_C57BL6NJ_T0024527.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197636985 197663514 - MGP_C57BL6NJ_P0024527 Marc2 protein_coding protein_coding MGP_C57BL6NJ_T0024528.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197644681 197662634 - Marc2 protein_coding processed_transcript MGP_C57BL6NJ_T0024529.1 MGP_C57BL6NJ_G0017310.1 mouse_genomes_project 1 197645836 197662910 - Marc2 protein_coding retained_intron MGP_C57BL6NJ_T0000865.1 MGP_C57BL6NJ_G0000779.1 mouse_genomes_project 1 177106903 177107902 - TEC TEC MGP_C57BL6NJ_T0022194.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127094816 127282003 - MGP_C57BL6NJ_P0022194 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0022195.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127100393 127131517 - MGP_C57BL6NJ_P0022195 Ptpn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022196.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127133676 127281737 - MGP_C57BL6NJ_P0022196 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0022197.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127136699 127183826 - MGP_C57BL6NJ_P0022197 Ptpn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022198.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127148220 127157459 - Ptpn4 protein_coding retained_intron MGP_C57BL6NJ_T0022199.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127168005 127228062 - MGP_C57BL6NJ_P0022199 Ptpn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022200.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127185794 127246042 - MGP_C57BL6NJ_P0022200 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0022201.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127208041 127281461 - MGP_C57BL6NJ_P0022201 Ptpn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022202.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127208381 127281461 - MGP_C57BL6NJ_P0022202 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0022203.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127217557 127246062 - MGP_C57BL6NJ_P0022203 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0022204.1 MGP_C57BL6NJ_G0016802.1 mouse_genomes_project 1 127217617 127281389 - MGP_C57BL6NJ_P0022204 Ptpn4 protein_coding protein_coding MGP_C57BL6NJ_T0019378.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11016347 11255044 - MGP_C57BL6NJ_P0019378 Ncoa2 protein_coding protein_coding MGP_C57BL6NJ_T0019379.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11016401 11256688 - MGP_C57BL6NJ_P0019379 Ncoa2 protein_coding protein_coding MGP_C57BL6NJ_T0019380.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11019717 11256688 - MGP_C57BL6NJ_P0019380 Ncoa2 protein_coding protein_coding MGP_C57BL6NJ_T0019381.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11022543 11023873 - Ncoa2 protein_coding processed_transcript MGP_C57BL6NJ_T0019382.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11023841 11025750 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019383.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11025671 11028261 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019384.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11041614 11256688 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019385.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11043038 11256634 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019386.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11059182 11255034 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019387.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11061504 11256634 - Ncoa2 protein_coding retained_intron MGP_C57BL6NJ_T0019388.1 MGP_C57BL6NJ_G0016233.1 mouse_genomes_project 1 11067004 11178675 - MGP_C57BL6NJ_P0019388 Ncoa2 protein_coding protein_coding MGP_C57BL6NJ_T0005877.1 MGP_C57BL6NJ_G0004933.1 mouse_genomes_project 1 44494226 44494725 - Gm29156 lincRNA lincRNA MGP_C57BL6NJ_T0006037.1 MGP_C57BL6NJ_G0005060.1 mouse_genomes_project 1 126968878 126975561 - 3830432H09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006038.1 MGP_C57BL6NJ_G0005060.1 mouse_genomes_project 1 126969691 126974641 - 3830432H09Rik lincRNA lincRNA MGP_C57BL6NJ_T0023730.1 MGP_C57BL6NJ_G0017114.1 mouse_genomes_project 1 178663062 178684929 + MGP_C57BL6NJ_P0023730 Tmco1 protein_coding protein_coding MGP_C57BL6NJ_T0023731.1 MGP_C57BL6NJ_G0017114.1 mouse_genomes_project 1 178663354 178684929 + MGP_C57BL6NJ_P0023731 Tmco1 protein_coding protein_coding MGP_C57BL6NJ_T0023732.1 MGP_C57BL6NJ_G0017114.1 mouse_genomes_project 1 178663420 178688052 + MGP_C57BL6NJ_P0023732 Tmco1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023733.1 MGP_C57BL6NJ_G0017114.1 mouse_genomes_project 1 178668850 178684744 + MGP_C57BL6NJ_P0023733 Tmco1 protein_coding protein_coding MGP_C57BL6NJ_T0000653.1 MGP_C57BL6NJ_G0000569.1 mouse_genomes_project 1 80807894 80811765 - TEC TEC MGP_C57BL6NJ_T0003053.1 MGP_C57BL6NJ_G0002864.1 mouse_genomes_project 1 156426260 156453793 - Gm15584 antisense antisense MGP_C57BL6NJ_T0012198.1 MGP_C57BL6NJ_G0010243.1 mouse_genomes_project 1 18899391 18899944 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012639.1 MGP_C57BL6NJ_G0010684.1 mouse_genomes_project 1 188807936 188808555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012297.1 MGP_C57BL6NJ_G0010342.1 mouse_genomes_project 1 49844912 49845125 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000542.1 MGP_C57BL6NJ_G0000459.1 mouse_genomes_project 1 24563055 24566040 - TEC TEC MGP_C57BL6NJ_T0024739.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 205926584 206202884 - MGP_C57BL6NJ_P0024739 Hhat protein_coding protein_coding MGP_C57BL6NJ_T0024740.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 205942701 206202894 - MGP_C57BL6NJ_P0024740 Hhat protein_coding protein_coding MGP_C57BL6NJ_T0024741.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 205972967 206202889 - MGP_C57BL6NJ_P0024741 Hhat protein_coding non_stop_decay MGP_C57BL6NJ_T0024742.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 206052536 206157204 - Hhat protein_coding processed_transcript MGP_C57BL6NJ_T0024743.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 206081721 206117101 - Hhat protein_coding processed_transcript MGP_C57BL6NJ_T0024744.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 206157192 206169838 - Hhat protein_coding processed_transcript MGP_C57BL6NJ_T0024745.1 MGP_C57BL6NJ_G0017354.1 mouse_genomes_project 1 206168968 206202663 - Hhat protein_coding processed_transcript MGP_C57BL6NJ_T0003111.1 MGP_C57BL6NJ_G0002908.1 mouse_genomes_project 1 190611717 190614781 - antisense antisense MGP_C57BL6NJ_T0022585.1 MGP_C57BL6NJ_G0016888.1 mouse_genomes_project 1 141911988 141934573 + MGP_C57BL6NJ_P0022585 protein_coding protein_coding MGP_C57BL6NJ_T0022586.1 MGP_C57BL6NJ_G0016888.1 mouse_genomes_project 1 141911988 141934780 + MGP_C57BL6NJ_P0022586 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022588.1 MGP_C57BL6NJ_G0016888.1 mouse_genomes_project 1 141926753 141934780 + MGP_C57BL6NJ_P0022588 protein_coding protein_coding MGP_C57BL6NJ_T0022590.1 MGP_C57BL6NJ_G0016888.1 mouse_genomes_project 1 141932090 141934601 + MGP_C57BL6NJ_P0022590 protein_coding protein_coding MGP_C57BL6NJ_T0019169.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1599612 1605095 - MGP_C57BL6NJ_P0019169 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019170.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1599931 1605439 - MGP_C57BL6NJ_P0019170 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019171.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1600071 1606036 - MGP_C57BL6NJ_P0019171 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019172.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1600394 1605045 - MGP_C57BL6NJ_P0019172 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019173.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1601138 1602286 - Sox17 protein_coding retained_intron MGP_C57BL6NJ_T0019174.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1601139 1605012 - MGP_C57BL6NJ_P0019174 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019175.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1601146 1602417 - MGP_C57BL6NJ_P0019175 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0019176.1 MGP_C57BL6NJ_G0016199.1 mouse_genomes_project 1 1601148 1605078 - MGP_C57BL6NJ_P0019176 Sox17 protein_coding protein_coding MGP_C57BL6NJ_T0020826.1 MGP_C57BL6NJ_G0016516.1 mouse_genomes_project 1 74413758 74595806 - MGP_C57BL6NJ_P0020826 Abca12 protein_coding protein_coding MGP_C57BL6NJ_T0020827.1 MGP_C57BL6NJ_G0016516.1 mouse_genomes_project 1 74458069 74475150 - Abca12 protein_coding retained_intron MGP_C57BL6NJ_T0020828.1 MGP_C57BL6NJ_G0016516.1 mouse_genomes_project 1 74480633 74595806 - Abca12 protein_coding retained_intron MGP_C57BL6NJ_T0020829.1 MGP_C57BL6NJ_G0016516.1 mouse_genomes_project 1 74507587 74510659 - Abca12 protein_coding retained_intron MGP_C57BL6NJ_T0020830.1 MGP_C57BL6NJ_G0016516.1 mouse_genomes_project 1 74537646 74595792 - Abca12 protein_coding retained_intron MGP_C57BL6NJ_T0012453.1 MGP_C57BL6NJ_G0010498.1 mouse_genomes_project 1 106159061 106159405 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023738.1 MGP_C57BL6NJ_G0017116.1 mouse_genomes_project 1 178728566 178750255 - MGP_C57BL6NJ_P0023738 Mgst3 protein_coding protein_coding MGP_C57BL6NJ_T0012369.1 MGP_C57BL6NJ_G0010414.1 mouse_genomes_project 1 68828928 68829269 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020381.1 MGP_C57BL6NJ_G0016436.1 mouse_genomes_project 1 60231856 60310903 + MGP_C57BL6NJ_P0020381 Aox1 protein_coding protein_coding MGP_C57BL6NJ_T0020382.1 MGP_C57BL6NJ_G0016436.1 mouse_genomes_project 1 60231889 60275785 + Aox1 protein_coding retained_intron MGP_C57BL6NJ_T0005854.1 MGP_C57BL6NJ_G0004923.1 mouse_genomes_project 1 42071775 42076049 - lincRNA lincRNA MGP_C57BL6NJ_T0021094.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78710784 78711657 - Glb1l protein_coding processed_transcript MGP_C57BL6NJ_T0021095.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78710791 78723298 - MGP_C57BL6NJ_P0021095 Glb1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021096.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78711639 78713720 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0021097.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78711895 78723298 - MGP_C57BL6NJ_P0021097 Glb1l protein_coding protein_coding MGP_C57BL6NJ_T0021098.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78712039 78721943 - MGP_C57BL6NJ_P0021098 Glb1l protein_coding protein_coding MGP_C57BL6NJ_T0021099.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78712039 78715438 - MGP_C57BL6NJ_P0021099 Glb1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021100.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78712377 78722014 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0021101.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78712641 78713796 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0021102.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78713499 78714843 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0021103.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78713753 78714371 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0021104.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78715266 78723333 - MGP_C57BL6NJ_P0021104 Glb1l protein_coding protein_coding MGP_C57BL6NJ_T0021105.1 MGP_C57BL6NJ_G0016568.1 mouse_genomes_project 1 78720530 78723273 - Glb1l protein_coding retained_intron MGP_C57BL6NJ_T0012644.1 MGP_C57BL6NJ_G0010689.1 mouse_genomes_project 1 191084966 191085440 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022671.1 MGP_C57BL6NJ_G0016909.1 mouse_genomes_project 1 143077022 143082064 + MGP_C57BL6NJ_P0022671 4933406M09Rik protein_coding protein_coding MGP_C57BL6NJ_T0011496.1 MGP_C57BL6NJ_G0009581.1 mouse_genomes_project 1 11845797 11846105 + Gm25491 misc_RNA misc_RNA MGP_C57BL6NJ_T0020308.1 MGP_C57BL6NJ_G0016421.1 mouse_genomes_project 1 57052192 57072249 - MGP_C57BL6NJ_P0020308 Hspd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020309.1 MGP_C57BL6NJ_G0016421.1 mouse_genomes_project 1 57057920 57072452 - MGP_C57BL6NJ_P0020309 Hspd1 protein_coding protein_coding MGP_C57BL6NJ_T0020310.1 MGP_C57BL6NJ_G0016421.1 mouse_genomes_project 1 57067494 57072671 - MGP_C57BL6NJ_P0020310 Hspd1 protein_coding protein_coding MGP_C57BL6NJ_T0020311.1 MGP_C57BL6NJ_G0016421.1 mouse_genomes_project 1 57068960 57072671 - MGP_C57BL6NJ_P0020311 Hspd1 protein_coding protein_coding MGP_C57BL6NJ_T0003045.1 MGP_C57BL6NJ_G0002857.1 mouse_genomes_project 1 144384266 144399436 + Gm4793 antisense antisense MGP_C57BL6NJ_T0020599.1 MGP_C57BL6NJ_G0016471.1 mouse_genomes_project 1 63347103 63375931 + Ctla4 protein_coding processed_transcript MGP_C57BL6NJ_T0020600.1 MGP_C57BL6NJ_G0016471.1 mouse_genomes_project 1 63372239 63379047 + MGP_C57BL6NJ_P0020600 Ctla4 protein_coding protein_coding MGP_C57BL6NJ_T0020601.1 MGP_C57BL6NJ_G0016471.1 mouse_genomes_project 1 63372385 63377984 + MGP_C57BL6NJ_P0020601 Ctla4 protein_coding protein_coding MGP_C57BL6NJ_T0003034.1 MGP_C57BL6NJ_G0002850.1 mouse_genomes_project 1 141635713 141655957 - Gm28609 antisense antisense MGP_C57BL6NJ_T0022299.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135941085 + Ccnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022300.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135943296 + Ccnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022301.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135943296 + Ccnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022302.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135945894 + Ccnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022303.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135955814 + MGP_C57BL6NJ_P0022303 Ccnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022304.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135920129 135953685 + MGP_C57BL6NJ_P0022304 Ccnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022305.1 MGP_C57BL6NJ_G0016826.1 mouse_genomes_project 1 135944063 135955814 + Ccnt2 protein_coding processed_transcript MGP_C57BL6NJ_T0017484.1 MGP_C57BL6NJ_G0015502.1 mouse_genomes_project 1 103756962 103761522 - B230216N24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017485.1 MGP_C57BL6NJ_G0015502.1 mouse_genomes_project 1 103756973 103775813 - B230216N24Rik processed_transcript sense_intronic MGP_C57BL6NJ_T0017486.1 MGP_C57BL6NJ_G0015502.1 mouse_genomes_project 1 103757563 103775847 - B230216N24Rik processed_transcript sense_intronic MGP_C57BL6NJ_T0017487.1 MGP_C57BL6NJ_G0015502.1 mouse_genomes_project 1 103757714 103786539 - B230216N24Rik processed_transcript sense_intronic MGP_C57BL6NJ_T0017488.1 MGP_C57BL6NJ_G0015502.1 mouse_genomes_project 1 103773870 103775808 - B230216N24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0024145.1 MGP_C57BL6NJ_G0017227.1 mouse_genomes_project 1 186275848 186353238 + MGP_C57BL6NJ_P0024145 Spta1 protein_coding protein_coding MGP_C57BL6NJ_T0024146.1 MGP_C57BL6NJ_G0017227.1 mouse_genomes_project 1 186322350 186352344 + Spta1 protein_coding retained_intron MGP_C57BL6NJ_T0022943.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153064328 153095492 + Glrx2 protein_coding retained_intron MGP_C57BL6NJ_T0022944.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153087791 153095494 + MGP_C57BL6NJ_P0022944 Glrx2 protein_coding protein_coding MGP_C57BL6NJ_T0022945.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088319 153091457 + Glrx2 protein_coding processed_transcript MGP_C57BL6NJ_T0022946.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088319 153098119 + MGP_C57BL6NJ_P0022946 Glrx2 protein_coding protein_coding MGP_C57BL6NJ_T0022947.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088328 153091823 + Glrx2 protein_coding retained_intron MGP_C57BL6NJ_T0022948.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088372 153091560 + Glrx2 protein_coding processed_transcript MGP_C57BL6NJ_T0022949.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088377 153095494 + MGP_C57BL6NJ_P0022949 Glrx2 protein_coding protein_coding MGP_C57BL6NJ_T0022950.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088380 153094317 + MGP_C57BL6NJ_P0022950 Glrx2 protein_coding protein_coding MGP_C57BL6NJ_T0022951.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153088408 153096027 + MGP_C57BL6NJ_P0022951 Glrx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022952.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153089137 153098393 + MGP_C57BL6NJ_P0022952 Glrx2 protein_coding protein_coding MGP_C57BL6NJ_T0022953.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153092132 153094382 + Glrx2 protein_coding retained_intron MGP_C57BL6NJ_T0022954.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153093700 153095404 + Glrx2 protein_coding retained_intron MGP_C57BL6NJ_T0022955.1 MGP_C57BL6NJ_G0016966.1 mouse_genomes_project 1 153094688 153095493 + Glrx2 protein_coding processed_transcript MGP_C57BL6NJ_T0022790.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650227 144666073 + MGP_C57BL6NJ_P0022790 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022791.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650259 144666073 + MGP_C57BL6NJ_P0022791 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022792.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650263 144653587 + Tnnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022793.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650263 144658600 + Tnnt2 protein_coding retained_intron MGP_C57BL6NJ_T0022794.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650275 144661897 + MGP_C57BL6NJ_P0022794 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022795.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650283 144666073 + MGP_C57BL6NJ_P0022795 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022796.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144650286 144666073 + MGP_C57BL6NJ_P0022796 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022797.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654566 144663307 + MGP_C57BL6NJ_P0022797 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022798.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654724 144666073 + MGP_C57BL6NJ_P0022798 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022799.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654742 144666073 + MGP_C57BL6NJ_P0022799 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022800.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654742 144666073 + MGP_C57BL6NJ_P0022800 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022801.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654742 144666073 + MGP_C57BL6NJ_P0022801 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022802.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654742 144666073 + MGP_C57BL6NJ_P0022802 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022803.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144654742 144666073 + MGP_C57BL6NJ_P0022803 Tnnt2 protein_coding protein_coding MGP_C57BL6NJ_T0022804.1 MGP_C57BL6NJ_G0016934.1 mouse_genomes_project 1 144663297 144663589 + Tnnt2 protein_coding retained_intron MGP_C57BL6NJ_T0021512.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91206344 91234060 + MGP_C57BL6NJ_P0021512 Cops7b protein_coding protein_coding MGP_C57BL6NJ_T0021513.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91206378 91212693 + MGP_C57BL6NJ_P0021513 Cops7b protein_coding protein_coding MGP_C57BL6NJ_T0021514.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91210499 91231185 + MGP_C57BL6NJ_P0021514 Cops7b protein_coding protein_coding MGP_C57BL6NJ_T0021515.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91210530 91231011 + MGP_C57BL6NJ_P0021515 Cops7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021516.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91210541 91231663 + MGP_C57BL6NJ_P0021516 Cops7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021517.1 MGP_C57BL6NJ_G0016645.1 mouse_genomes_project 1 91220139 91225932 + Cops7b protein_coding processed_transcript MGP_C57BL6NJ_T0000895.1 MGP_C57BL6NJ_G0000808.1 mouse_genomes_project 1 192803183 192810591 + TEC TEC MGP_C57BL6NJ_T0012404.1 MGP_C57BL6NJ_G0010449.1 mouse_genomes_project 1 86924601 86924784 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021540.1 MGP_C57BL6NJ_G0016654.1 mouse_genomes_project 1 91880401 91884041 + MGP_C57BL6NJ_P0021540 Chrng protein_coding protein_coding MGP_C57BL6NJ_T0021541.1 MGP_C57BL6NJ_G0016654.1 mouse_genomes_project 1 91881554 91884040 + MGP_C57BL6NJ_P0021541 Chrng protein_coding protein_coding MGP_C57BL6NJ_T0021542.1 MGP_C57BL6NJ_G0016654.1 mouse_genomes_project 1 91881555 91888439 + MGP_C57BL6NJ_P0021542 Chrng protein_coding protein_coding MGP_C57BL6NJ_T0021543.1 MGP_C57BL6NJ_G0016654.1 mouse_genomes_project 1 91881629 91884040 + MGP_C57BL6NJ_P0021543 Chrng protein_coding protein_coding MGP_C57BL6NJ_T0021544.1 MGP_C57BL6NJ_G0016654.1 mouse_genomes_project 1 91881818 91884340 + Chrng protein_coding retained_intron MGP_C57BL6NJ_T0012573.1 MGP_C57BL6NJ_G0010618.1 mouse_genomes_project 1 158851350 158851867 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000685.1 MGP_C57BL6NJ_G0000601.1 mouse_genomes_project 1 91573130 91575795 + TEC TEC MGP_C57BL6NJ_T0012669.1 MGP_C57BL6NJ_G0010714.1 mouse_genomes_project 1 205203372 205203704 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012277.1 MGP_C57BL6NJ_G0010322.1 mouse_genomes_project 1 45242241 45242550 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020132.1 MGP_C57BL6NJ_G0016390.1 mouse_genomes_project 1 48068516 48119032 - MGP_C57BL6NJ_P0020132 Slc39a10 protein_coding protein_coding MGP_C57BL6NJ_T0020133.1 MGP_C57BL6NJ_G0016390.1 mouse_genomes_project 1 48078135 48096398 - Slc39a10 protein_coding retained_intron MGP_C57BL6NJ_T0020134.1 MGP_C57BL6NJ_G0016390.1 mouse_genomes_project 1 48096138 48161201 - MGP_C57BL6NJ_P0020134 Slc39a10 protein_coding protein_coding MGP_C57BL6NJ_T0020135.1 MGP_C57BL6NJ_G0016390.1 mouse_genomes_project 1 48096236 48156423 - MGP_C57BL6NJ_P0020135 Slc39a10 protein_coding protein_coding MGP_C57BL6NJ_T0020797.1 MGP_C57BL6NJ_G0016510.1 mouse_genomes_project 1 69998012 70113739 + MGP_C57BL6NJ_P0020797 Cps1 protein_coding protein_coding MGP_C57BL6NJ_T0006064.1 MGP_C57BL6NJ_G0005081.1 mouse_genomes_project 1 140861414 140868797 + F730311O21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006019.1 MGP_C57BL6NJ_G0005046.1 mouse_genomes_project 1 112267259 112279013 - Gm7160 lincRNA lincRNA MGP_C57BL6NJ_T0006020.1 MGP_C57BL6NJ_G0005046.1 mouse_genomes_project 1 112277956 112278983 - Gm7160 lincRNA lincRNA MGP_C57BL6NJ_T0022107.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116558799 116571816 + MGP_C57BL6NJ_P0022107 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022108.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116559078 116750280 + MGP_C57BL6NJ_P0022108 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022109.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116559349 116571184 + MGP_C57BL6NJ_P0022109 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022110.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116559374 116570243 + MGP_C57BL6NJ_P0022110 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022111.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116559597 116749318 + MGP_C57BL6NJ_P0022111 Cdh7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022112.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116559649 116574527 + MGP_C57BL6NJ_P0022112 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022113.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116560105 116749124 + MGP_C57BL6NJ_P0022113 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022114.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116569842 116749312 + MGP_C57BL6NJ_P0022114 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0022115.1 MGP_C57BL6NJ_G0016784.1 mouse_genomes_project 1 116710127 116748181 + MGP_C57BL6NJ_P0022115 Cdh7 protein_coding protein_coding MGP_C57BL6NJ_T0005950.1 MGP_C57BL6NJ_G0004987.1 mouse_genomes_project 1 76966745 76974158 + Gm29186 lincRNA lincRNA MGP_C57BL6NJ_T0000648.1 MGP_C57BL6NJ_G0000564.1 mouse_genomes_project 1 77782959 77783278 - TEC TEC MGP_C57BL6NJ_T0003113.1 MGP_C57BL6NJ_G0002910.1 mouse_genomes_project 1 192696322 192714917 + Gm31728 antisense antisense MGP_C57BL6NJ_T0000730.1 MGP_C57BL6NJ_G0000646.1 mouse_genomes_project 1 131144878 131146939 - TEC TEC MGP_C57BL6NJ_T0023946.1 MGP_C57BL6NJ_G0017164.1 mouse_genomes_project 1 183111516 183112011 + Tstd1 protein_coding processed_transcript MGP_C57BL6NJ_T0023947.1 MGP_C57BL6NJ_G0017164.1 mouse_genomes_project 1 183111677 183112997 + MGP_C57BL6NJ_P0023947 Tstd1 protein_coding protein_coding MGP_C57BL6NJ_T0023948.1 MGP_C57BL6NJ_G0017164.1 mouse_genomes_project 1 183112363 183112996 + Tstd1 protein_coding retained_intron MGP_C57BL6NJ_T0002996.1 MGP_C57BL6NJ_G0002821.1 mouse_genomes_project 1 93233126 93238568 - 4930453O03Rik antisense antisense MGP_C57BL6NJ_T0000642.1 MGP_C57BL6NJ_G0000558.1 mouse_genomes_project 1 71742766 71746009 - TEC TEC MGP_C57BL6NJ_T0011505.1 MGP_C57BL6NJ_G0009590.1 mouse_genomes_project 1 65754120 65754296 + Gm27390 misc_RNA misc_RNA MGP_C57BL6NJ_T0000823.1 MGP_C57BL6NJ_G0000737.1 mouse_genomes_project 1 166745724 166746370 - TEC TEC MGP_C57BL6NJ_T0006008.1 MGP_C57BL6NJ_G0005037.1 mouse_genomes_project 1 101593335 101625367 - 1700063A18Rik lincRNA lincRNA MGP_C57BL6NJ_T0005928.1 MGP_C57BL6NJ_G0004973.1 mouse_genomes_project 1 70697690 70710450 + Gm15669 lincRNA lincRNA MGP_C57BL6NJ_T0012610.1 MGP_C57BL6NJ_G0010655.1 mouse_genomes_project 1 173626741 173627452 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102639.1 MGP_C57BL6NJ_G0040434.1 mouse_genomes_project 1 53815278 53816166 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0024408.1 MGP_C57BL6NJ_G0017285.1 mouse_genomes_project 1 193975380 194097642 + MGP_C57BL6NJ_P0024408 Cnih3 protein_coding protein_coding MGP_C57BL6NJ_T0024409.1 MGP_C57BL6NJ_G0017285.1 mouse_genomes_project 1 193975382 194098374 + MGP_C57BL6NJ_P0024409 Cnih3 protein_coding protein_coding MGP_C57BL6NJ_T0024410.1 MGP_C57BL6NJ_G0017285.1 mouse_genomes_project 1 193975950 194097020 + MGP_C57BL6NJ_P0024410 Cnih3 protein_coding protein_coding MGP_C57BL6NJ_T0100843.1 MGP_C57BL6NJ_G0038889.1 mouse_genomes_project 1 7543887 7543974 - Snord87 snoRNA snoRNA MGP_C57BL6NJ_T0000545.1 MGP_C57BL6NJ_G0000462.1 mouse_genomes_project 1 24653272 24659369 - TEC TEC MGP_C57BL6NJ_T0019511.1 MGP_C57BL6NJ_G0016267.1 mouse_genomes_project 1 19738659 19753234 + MGP_C57BL6NJ_P0019511 Tmem14a protein_coding protein_coding MGP_C57BL6NJ_T0019512.1 MGP_C57BL6NJ_G0016267.1 mouse_genomes_project 1 19738746 19753231 + MGP_C57BL6NJ_P0019512 Tmem14a protein_coding protein_coding MGP_C57BL6NJ_T0020245.1 MGP_C57BL6NJ_G0016408.1 mouse_genomes_project 1 55018221 55041054 + MGP_C57BL6NJ_P0020245 Gm28778 protein_coding protein_coding MGP_C57BL6NJ_T0102695.1 MGP_C57BL6NJ_G0040490.1 mouse_genomes_project 1 185911598 185913485 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006000.1 MGP_C57BL6NJ_G0005030.1 mouse_genomes_project 1 97460760 97467778 + Gm29099 lincRNA lincRNA MGP_C57BL6NJ_T0012394.1 MGP_C57BL6NJ_G0010439.1 mouse_genomes_project 1 83393817 83395172 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023543.1 MGP_C57BL6NJ_G0017071.1 mouse_genomes_project 1 173970826 174004296 - MGP_C57BL6NJ_P0023543 Fmo3 protein_coding protein_coding MGP_C57BL6NJ_T0023544.1 MGP_C57BL6NJ_G0017071.1 mouse_genomes_project 1 173981167 174004297 - Fmo3 protein_coding retained_intron MGP_C57BL6NJ_T0100853.1 MGP_C57BL6NJ_G0038899.1 mouse_genomes_project 1 19339238 19339370 - Gm24723 snoRNA snoRNA MGP_C57BL6NJ_T0024075.1 MGP_C57BL6NJ_G0017194.1 mouse_genomes_project 1 184354674 184362366 + MGP_C57BL6NJ_P0024075 Vsig8 protein_coding protein_coding MGP_C57BL6NJ_T0024076.1 MGP_C57BL6NJ_G0017194.1 mouse_genomes_project 1 184358642 184362365 + MGP_C57BL6NJ_P0024076 Vsig8 protein_coding protein_coding MGP_C57BL6NJ_T0000872.1 MGP_C57BL6NJ_G0000786.1 mouse_genomes_project 1 184168135 184170891 - TEC TEC MGP_C57BL6NJ_T0022267.1 MGP_C57BL6NJ_G0016819.1 mouse_genomes_project 1 133516328 133524108 + MGP_C57BL6NJ_P0022267 Slc35f5 protein_coding protein_coding MGP_C57BL6NJ_T0022268.1 MGP_C57BL6NJ_G0016819.1 mouse_genomes_project 1 133516749 133553381 + MGP_C57BL6NJ_P0022268 Slc35f5 protein_coding protein_coding MGP_C57BL6NJ_T0022269.1 MGP_C57BL6NJ_G0016819.1 mouse_genomes_project 1 133542113 133552709 + MGP_C57BL6NJ_P0022269 Slc35f5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100901.1 MGP_C57BL6NJ_G0038947.1 mouse_genomes_project 1 120571032 120571166 - Gm24937 snoRNA snoRNA MGP_C57BL6NJ_T0020003.1 MGP_C57BL6NJ_G0016363.1 mouse_genomes_project 1 41246217 41267742 - MGP_C57BL6NJ_P0020003 Mfsd9 protein_coding protein_coding MGP_C57BL6NJ_T0020004.1 MGP_C57BL6NJ_G0016363.1 mouse_genomes_project 1 41246220 41267766 - MGP_C57BL6NJ_P0020004 Mfsd9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020005.1 MGP_C57BL6NJ_G0016363.1 mouse_genomes_project 1 41258489 41267736 - Mfsd9 protein_coding retained_intron MGP_C57BL6NJ_T0000773.1 MGP_C57BL6NJ_G0000688.1 mouse_genomes_project 1 144711352 144714048 - TEC TEC MGP_C57BL6NJ_T0020243.1 MGP_C57BL6NJ_G0016407.1 mouse_genomes_project 1 55018205 55023064 + Ormdl1 protein_coding retained_intron MGP_C57BL6NJ_T0020244.1 MGP_C57BL6NJ_G0016407.1 mouse_genomes_project 1 55018205 55033328 + MGP_C57BL6NJ_P0020244 Ormdl1 protein_coding protein_coding MGP_C57BL6NJ_T0012354.1 MGP_C57BL6NJ_G0010399.1 mouse_genomes_project 1 65592576 65592944 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023671.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177126972 177199588 - MGP_C57BL6NJ_P0023671 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023672.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177126972 177267216 - MGP_C57BL6NJ_P0023672 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023673.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177133058 177196654 - MGP_C57BL6NJ_P0023673 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023674.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137241 177176707 - MGP_C57BL6NJ_P0023674 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023675.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137275 177267156 - MGP_C57BL6NJ_P0023675 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023676.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137275 177267160 - MGP_C57BL6NJ_P0023676 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023677.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137279 177199588 - MGP_C57BL6NJ_P0023677 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023678.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137306 177141979 - MGP_C57BL6NJ_P0023678 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023679.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137402 177155547 - Pou2f1 protein_coding retained_intron MGP_C57BL6NJ_T0023680.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137426 177267167 - MGP_C57BL6NJ_P0023680 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023681.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177137500 177199540 - MGP_C57BL6NJ_P0023681 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023682.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177141745 177199651 - Pou2f1 protein_coding retained_intron MGP_C57BL6NJ_T0023683.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177141900 177199579 - Pou2f1 protein_coding retained_intron MGP_C57BL6NJ_T0023684.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177153154 177267153 - Pou2f1 protein_coding retained_intron MGP_C57BL6NJ_T0023685.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177174746 177267151 - MGP_C57BL6NJ_P0023685 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0023686.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177194306 177267167 - Pou2f1 protein_coding retained_intron MGP_C57BL6NJ_T0023687.1 MGP_C57BL6NJ_G0017102.1 mouse_genomes_project 1 177196346 177267147 - MGP_C57BL6NJ_P0023687 Pou2f1 protein_coding protein_coding MGP_C57BL6NJ_T0009717.1 MGP_C57BL6NJ_G0007802.1 mouse_genomes_project 1 123460983 123461055 - Gm23393 miRNA miRNA MGP_C57BL6NJ_T0012272.1 MGP_C57BL6NJ_G0010317.1 mouse_genomes_project 1 44641285 44641830 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003010.1 MGP_C57BL6NJ_G0002833.1 mouse_genomes_project 1 111161591 111162494 - Gm15699 antisense antisense MGP_C57BL6NJ_T0011499.1 MGP_C57BL6NJ_G0009584.1 mouse_genomes_project 1 32486486 32486778 + Gm23024 misc_RNA misc_RNA MGP_C57BL6NJ_T0012608.1 MGP_C57BL6NJ_G0010653.1 mouse_genomes_project 1 172776295 172777499 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003120.1 MGP_C57BL6NJ_G0002915.1 mouse_genomes_project 1 197746298 197765514 + Gm38251 antisense antisense MGP_C57BL6NJ_T0102641.1 MGP_C57BL6NJ_G0040436.1 mouse_genomes_project 1 61115202 61157204 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012570.1 MGP_C57BL6NJ_G0010615.1 mouse_genomes_project 1 157811598 157812066 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098930.1 MGP_C57BL6NJ_G0036994.1 mouse_genomes_project 1 94546415 94546530 + Gm25180 rRNA rRNA MGP_C57BL6NJ_T0099238.1 MGP_C57BL6NJ_G0037302.1 mouse_genomes_project 1 135440552 135440681 + Gm23370 scaRNA scaRNA MGP_C57BL6NJ_T0012522.1 MGP_C57BL6NJ_G0010567.1 mouse_genomes_project 1 129835300 129836135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100866.1 MGP_C57BL6NJ_G0038912.1 mouse_genomes_project 1 46701195 46701326 + Gm23974 snoRNA snoRNA MGP_C57BL6NJ_T0006205.1 MGP_C57BL6NJ_G0005190.1 mouse_genomes_project 1 199713732 199723081 + lincRNA lincRNA MGP_C57BL6NJ_T0000787.1 MGP_C57BL6NJ_G0000701.1 mouse_genomes_project 1 147291164 147291584 + TEC TEC MGP_C57BL6NJ_T0020814.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 72886703 73359323 + Spag16 protein_coding processed_transcript MGP_C57BL6NJ_T0020815.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 72886704 73359224 + Spag16 protein_coding processed_transcript MGP_C57BL6NJ_T0020816.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 72886721 73858830 + MGP_C57BL6NJ_P0020816 Spag16 protein_coding protein_coding MGP_C57BL6NJ_T0020817.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 72886725 72990109 + MGP_C57BL6NJ_P0020817 Spag16 protein_coding protein_coding MGP_C57BL6NJ_T0020818.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 72891379 72934684 + Spag16 protein_coding processed_transcript MGP_C57BL6NJ_T0020819.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 73014151 73858830 + Spag16 protein_coding processed_transcript MGP_C57BL6NJ_T0020820.1 MGP_C57BL6NJ_G0016513.1 mouse_genomes_project 1 73014178 73374057 + Spag16 protein_coding processed_transcript MGP_C57BL6NJ_T0020397.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60619103 60633065 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020398.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60621776 - Clk1 protein_coding processed_transcript MGP_C57BL6NJ_T0020399.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60622352 - Clk1 protein_coding processed_transcript MGP_C57BL6NJ_T0020400.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60625684 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020401.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60633065 - MGP_C57BL6NJ_P0020401 Clk1 protein_coding protein_coding MGP_C57BL6NJ_T0020402.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60633065 - MGP_C57BL6NJ_P0020402 Clk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020403.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60620914 60633065 - MGP_C57BL6NJ_P0020403 Clk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020404.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60621230 60622740 - Clk1 protein_coding processed_transcript MGP_C57BL6NJ_T0020405.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60623504 60629296 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020406.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60623529 60630156 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020407.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60625061 60633065 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020408.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60625828 60626345 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0020409.1 MGP_C57BL6NJ_G0016441.1 mouse_genomes_project 1 60630523 60633065 - Clk1 protein_coding retained_intron MGP_C57BL6NJ_T0012360.1 MGP_C57BL6NJ_G0010405.1 mouse_genomes_project 1 67128422 67128641 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003035.1 MGP_C57BL6NJ_G0002851.1 mouse_genomes_project 1 141848319 141869937 - Gm19461 antisense antisense MGP_C57BL6NJ_T0003036.1 MGP_C57BL6NJ_G0002851.1 mouse_genomes_project 1 141849129 141855045 - Gm19461 antisense antisense MGP_C57BL6NJ_T0003037.1 MGP_C57BL6NJ_G0002851.1 mouse_genomes_project 1 141851824 141852214 - Gm19461 antisense antisense MGP_C57BL6NJ_T0003038.1 MGP_C57BL6NJ_G0002851.1 mouse_genomes_project 1 141852204 141854279 - Gm19461 antisense antisense MGP_C57BL6NJ_T0003039.1 MGP_C57BL6NJ_G0002851.1 mouse_genomes_project 1 141854467 141856599 - Gm19461 antisense antisense MGP_C57BL6NJ_T0009693.1 MGP_C57BL6NJ_G0007778.1 mouse_genomes_project 1 78458395 78458459 - Mir375 miRNA miRNA MGP_C57BL6NJ_T0102642.1 MGP_C57BL6NJ_G0040437.1 mouse_genomes_project 1 61266142 61274514 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012230.1 MGP_C57BL6NJ_G0010275.1 mouse_genomes_project 1 30865091 30865655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099304.1 MGP_C57BL6NJ_G0037367.1 mouse_genomes_project 1 153126306 153129972 + Gm29170 sense_intronic sense_intronic MGP_C57BL6NJ_T0020269.1 MGP_C57BL6NJ_G0016415.1 mouse_genomes_project 1 56170876 56194327 + Ccdc150 protein_coding retained_intron MGP_C57BL6NJ_T0020270.1 MGP_C57BL6NJ_G0016415.1 mouse_genomes_project 1 56170876 56292497 + MGP_C57BL6NJ_P0020270 Ccdc150 protein_coding protein_coding MGP_C57BL6NJ_T0020271.1 MGP_C57BL6NJ_G0016415.1 mouse_genomes_project 1 56170915 56292240 + MGP_C57BL6NJ_P0020271 Ccdc150 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020272.1 MGP_C57BL6NJ_G0016415.1 mouse_genomes_project 1 56253591 56292378 + Ccdc150 protein_coding processed_transcript MGP_C57BL6NJ_T0020273.1 MGP_C57BL6NJ_G0016415.1 mouse_genomes_project 1 56277472 56292373 + Ccdc150 protein_coding retained_intron MGP_C57BL6NJ_T0024506.1 MGP_C57BL6NJ_G0017305.1 mouse_genomes_project 1 196170065 196170671 + Hhipl2 protein_coding processed_transcript MGP_C57BL6NJ_T0024507.1 MGP_C57BL6NJ_G0017305.1 mouse_genomes_project 1 196170303 196192790 + MGP_C57BL6NJ_P0024507 Hhipl2 protein_coding protein_coding MGP_C57BL6NJ_T0024508.1 MGP_C57BL6NJ_G0017305.1 mouse_genomes_project 1 196170400 196177220 + Hhipl2 protein_coding processed_transcript MGP_C57BL6NJ_T0024509.1 MGP_C57BL6NJ_G0017305.1 mouse_genomes_project 1 196171089 196192797 + MGP_C57BL6NJ_P0024509 Hhipl2 protein_coding protein_coding MGP_C57BL6NJ_T0099646.1 MGP_C57BL6NJ_G0037692.1 mouse_genomes_project 1 182313165 182313272 - Gm23523 snRNA snRNA MGP_C57BL6NJ_T0099600.1 MGP_C57BL6NJ_G0037646.1 mouse_genomes_project 1 73016865 73016991 - Gm23879 snRNA snRNA MGP_C57BL6NJ_T0012371.1 MGP_C57BL6NJ_G0010416.1 mouse_genomes_project 1 69629970 69632503 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000911.1 MGP_C57BL6NJ_G0000823.1 mouse_genomes_project 1 198187735 198190143 + TEC TEC MGP_C57BL6NJ_T0023206.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165699194 165863965 - MGP_C57BL6NJ_P0023206 Xpr1 protein_coding protein_coding MGP_C57BL6NJ_T0023207.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165702473 165864043 - MGP_C57BL6NJ_P0023207 Xpr1 protein_coding protein_coding MGP_C57BL6NJ_T0023208.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165705674 165739984 - Xpr1 protein_coding retained_intron MGP_C57BL6NJ_T0023209.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165706159 165864051 - MGP_C57BL6NJ_P0023209 Xpr1 protein_coding protein_coding MGP_C57BL6NJ_T0023210.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165712764 165715505 - Xpr1 protein_coding retained_intron MGP_C57BL6NJ_T0023211.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165759340 165864031 - Xpr1 protein_coding retained_intron MGP_C57BL6NJ_T0023212.1 MGP_C57BL6NJ_G0017016.1 mouse_genomes_project 1 165822582 165825649 - Xpr1 protein_coding processed_transcript MGP_C57BL6NJ_T0012547.1 MGP_C57BL6NJ_G0010592.1 mouse_genomes_project 1 145677902 145678241 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021086.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704898 78707633 + Ankzf1 protein_coding retained_intron MGP_C57BL6NJ_T0021087.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704907 78708083 + Ankzf1 protein_coding retained_intron MGP_C57BL6NJ_T0021088.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704907 78711936 + Ankzf1 protein_coding retained_intron MGP_C57BL6NJ_T0021089.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704907 78711936 + Ankzf1 protein_coding retained_intron MGP_C57BL6NJ_T0021090.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704907 78711936 + MGP_C57BL6NJ_P0021090 Ankzf1 protein_coding protein_coding MGP_C57BL6NJ_T0021091.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704907 78711936 + MGP_C57BL6NJ_P0021091 Ankzf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021092.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78704939 78708083 + MGP_C57BL6NJ_P0021092 Ankzf1 protein_coding protein_coding MGP_C57BL6NJ_T0021093.1 MGP_C57BL6NJ_G0016567.1 mouse_genomes_project 1 78708241 78709205 + Ankzf1 protein_coding retained_intron MGP_C57BL6NJ_T0099543.1 MGP_C57BL6NJ_G0037593.1 mouse_genomes_project 1 111635537 111661902 - sense_overlapping sense_overlapping MGP_C57BL6NJ_T0012177.1 MGP_C57BL6NJ_G0010222.1 mouse_genomes_project 1 10935842 10936163 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099629.1 MGP_C57BL6NJ_G0037675.1 mouse_genomes_project 1 142961206 142961313 - Gm24517 snRNA snRNA MGP_C57BL6NJ_T0099285.1 MGP_C57BL6NJ_G0037349.1 mouse_genomes_project 1 37072691 37075626 - Gm38115 sense_intronic sense_intronic MGP_C57BL6NJ_T0017443.1 MGP_C57BL6NJ_G0015483.1 mouse_genomes_project 1 34026361 34038777 - Gm26788 processed_transcript antisense MGP_C57BL6NJ_T0017444.1 MGP_C57BL6NJ_G0015483.1 mouse_genomes_project 1 34035536 34038952 - Gm26788 processed_transcript retained_intron MGP_C57BL6NJ_T0102689.1 MGP_C57BL6NJ_G0040484.1 mouse_genomes_project 1 184908758 184909053 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100907.1 MGP_C57BL6NJ_G0038953.1 mouse_genomes_project 1 141367131 141367252 - Gm22609 snoRNA snoRNA MGP_C57BL6NJ_T0006132.1 MGP_C57BL6NJ_G0005135.1 mouse_genomes_project 1 175779044 175787426 + lincRNA lincRNA MGP_C57BL6NJ_T0000846.1 MGP_C57BL6NJ_G0000760.1 mouse_genomes_project 1 171588878 171589305 - TEC TEC MGP_C57BL6NJ_T0022733.1 MGP_C57BL6NJ_G0016923.1 mouse_genomes_project 1 144033473 144038455 - MGP_C57BL6NJ_P0022733 Elf3 protein_coding protein_coding MGP_C57BL6NJ_T0022734.1 MGP_C57BL6NJ_G0016923.1 mouse_genomes_project 1 144033477 144038325 - MGP_C57BL6NJ_P0022734 Elf3 protein_coding protein_coding MGP_C57BL6NJ_T0022735.1 MGP_C57BL6NJ_G0016923.1 mouse_genomes_project 1 144036555 144037548 - Elf3 protein_coding retained_intron MGP_C57BL6NJ_T0003147.1 MGP_C57BL6NJ_G0002935.1 mouse_genomes_project 1 205490701 205499011 + Gm26879 antisense antisense MGP_C57BL6NJ_T0022168.1 MGP_C57BL6NJ_G0016796.1 mouse_genomes_project 1 125981487 125991605 + Tfcp2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0022169.1 MGP_C57BL6NJ_G0016796.1 mouse_genomes_project 1 125981488 126040966 + MGP_C57BL6NJ_P0022169 Tfcp2l1 protein_coding protein_coding MGP_C57BL6NJ_T0017518.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932008 171935118 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017519.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932193 171936126 + Gas5 processed_transcript lincRNA MGP_C57BL6NJ_T0017520.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932515 171936122 + Gas5 processed_transcript lincRNA MGP_C57BL6NJ_T0017521.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932653 171936124 + Gas5 processed_transcript lincRNA MGP_C57BL6NJ_T0017522.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932749 171936124 + Gas5 processed_transcript lincRNA MGP_C57BL6NJ_T0017523.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932749 171935133 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017524.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932749 171936120 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017525.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932752 171936121 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017526.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932752 171936126 + Gas5 processed_transcript lincRNA MGP_C57BL6NJ_T0017527.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932752 171934643 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017528.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932752 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017529.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932753 171935833 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017530.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932754 171935147 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017531.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932758 171934216 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017532.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932764 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017533.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932770 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017534.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932772 171936065 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017535.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171932774 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017536.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171933606 171934475 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017537.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171934281 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017538.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171934874 171936119 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017539.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171934895 171935712 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017540.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171934939 171936122 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017541.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171935304 171936124 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0017542.1 MGP_C57BL6NJ_G0015513.1 mouse_genomes_project 1 171935367 171936126 + Gas5 processed_transcript retained_intron MGP_C57BL6NJ_T0000767.1 MGP_C57BL6NJ_G0000682.1 mouse_genomes_project 1 142768642 142771397 - TEC TEC MGP_C57BL6NJ_T0019863.1 MGP_C57BL6NJ_G0016333.1 mouse_genomes_project 1 38105612 38109218 + MGP_C57BL6NJ_P0019863 Lipt1 protein_coding protein_coding MGP_C57BL6NJ_T0019864.1 MGP_C57BL6NJ_G0016333.1 mouse_genomes_project 1 38106080 38110103 + MGP_C57BL6NJ_P0019864 Lipt1 protein_coding protein_coding MGP_C57BL6NJ_T0019865.1 MGP_C57BL6NJ_G0016333.1 mouse_genomes_project 1 38106248 38109335 + MGP_C57BL6NJ_P0019865 Lipt1 protein_coding protein_coding MGP_C57BL6NJ_T0019866.1 MGP_C57BL6NJ_G0016333.1 mouse_genomes_project 1 38106436 38109429 + MGP_C57BL6NJ_P0019866 Lipt1 protein_coding protein_coding MGP_C57BL6NJ_T0006032.1 MGP_C57BL6NJ_G0005056.1 mouse_genomes_project 1 125665107 125673043 + Gm28867 lincRNA lincRNA MGP_C57BL6NJ_T0005802.1 MGP_C57BL6NJ_G0004881.1 mouse_genomes_project 1 1691460 1694584 - Gm37323 lincRNA lincRNA MGP_C57BL6NJ_T0021882.1 MGP_C57BL6NJ_G0016731.1 mouse_genomes_project 1 98365497 98375097 - MGP_C57BL6NJ_P0021882 2310007B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0021883.1 MGP_C57BL6NJ_G0016731.1 mouse_genomes_project 1 98365731 98375019 - MGP_C57BL6NJ_P0021883 2310007B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0000757.1 MGP_C57BL6NJ_G0000673.1 mouse_genomes_project 1 139498733 139504660 - TEC TEC MGP_C57BL6NJ_T0021646.1 MGP_C57BL6NJ_G0016672.1 mouse_genomes_project 1 92825456 92993944 + MGP_C57BL6NJ_P0021646 protein_coding protein_coding MGP_C57BL6NJ_T0021647.1 MGP_C57BL6NJ_G0016672.1 mouse_genomes_project 1 92825458 92997357 + MGP_C57BL6NJ_P0021647 protein_coding protein_coding MGP_C57BL6NJ_T0021649.1 MGP_C57BL6NJ_G0016672.1 mouse_genomes_project 1 92846033 92997357 + MGP_C57BL6NJ_P0021649 protein_coding protein_coding MGP_C57BL6NJ_T0012163.1 MGP_C57BL6NJ_G0010208.1 mouse_genomes_project 1 6996615 6997785 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003103.1 MGP_C57BL6NJ_G0002901.1 mouse_genomes_project 1 183980417 183981077 + Gm17224 antisense antisense MGP_C57BL6NJ_T0019481.1 MGP_C57BL6NJ_G0016257.1 mouse_genomes_project 1 16530319 16544964 - MGP_C57BL6NJ_P0019481 Defb41 protein_coding protein_coding MGP_C57BL6NJ_T0019482.1 MGP_C57BL6NJ_G0016257.1 mouse_genomes_project 1 16540299 16544906 - MGP_C57BL6NJ_P0019482 Defb41 protein_coding protein_coding MGP_C57BL6NJ_T0003088.1 MGP_C57BL6NJ_G0002891.1 mouse_genomes_project 1 177582854 177585699 - 5330438I03Rik antisense antisense MGP_C57BL6NJ_T0000729.1 MGP_C57BL6NJ_G0000645.1 mouse_genomes_project 1 131125615 131128622 - TEC TEC MGP_C57BL6NJ_T0000758.1 MGP_C57BL6NJ_G0000674.1 mouse_genomes_project 1 139776027 139777409 - TEC TEC MGP_C57BL6NJ_T0005826.1 MGP_C57BL6NJ_G0004900.1 mouse_genomes_project 1 23875862 23877630 - Gm28237 lincRNA lincRNA MGP_C57BL6NJ_T0005827.1 MGP_C57BL6NJ_G0004900.1 mouse_genomes_project 1 23876649 23877812 - Gm28237 lincRNA lincRNA MGP_C57BL6NJ_T0021197.1 MGP_C57BL6NJ_G0016579.1 mouse_genomes_project 1 78974485 79006302 + MGP_C57BL6NJ_P0021197 Asic4 protein_coding protein_coding MGP_C57BL6NJ_T0021198.1 MGP_C57BL6NJ_G0016579.1 mouse_genomes_project 1 78974748 79006305 + MGP_C57BL6NJ_P0021198 Asic4 protein_coding protein_coding MGP_C57BL6NJ_T0021474.1 MGP_C57BL6NJ_G0016636.1 mouse_genomes_project 1 90663164 90676109 - MGP_C57BL6NJ_P0021474 Htr2b protein_coding protein_coding MGP_C57BL6NJ_T0021475.1 MGP_C57BL6NJ_G0016636.1 mouse_genomes_project 1 90664239 90674811 - MGP_C57BL6NJ_P0021475 Htr2b protein_coding protein_coding MGP_C57BL6NJ_T0009664.1 MGP_C57BL6NJ_G0007749.1 mouse_genomes_project 1 29456973 29457083 + Gm23771 miRNA miRNA MGP_C57BL6NJ_T0021279.1 MGP_C57BL6NJ_G0016594.1 mouse_genomes_project 1 82657433 82660704 + MGP_C57BL6NJ_P0021279 Kcne4 protein_coding protein_coding MGP_C57BL6NJ_T0021280.1 MGP_C57BL6NJ_G0016594.1 mouse_genomes_project 1 82657602 82660704 + MGP_C57BL6NJ_P0021280 Kcne4 protein_coding protein_coding MGP_C57BL6NJ_T0099583.1 MGP_C57BL6NJ_G0037629.1 mouse_genomes_project 1 33108635 33108735 + Gm25792 snRNA snRNA MGP_C57BL6NJ_T0003020.1 MGP_C57BL6NJ_G0002839.1 mouse_genomes_project 1 135899626 135920058 - 2900009J06Rik antisense antisense MGP_C57BL6NJ_T0003021.1 MGP_C57BL6NJ_G0002839.1 mouse_genomes_project 1 135899626 135920020 - 2900009J06Rik antisense antisense MGP_C57BL6NJ_T0020263.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55710297 56114318 - MGP_C57BL6NJ_P0020263 Hecw2 protein_coding protein_coding MGP_C57BL6NJ_T0020264.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55710303 56115304 - MGP_C57BL6NJ_P0020264 Hecw2 protein_coding protein_coding MGP_C57BL6NJ_T0020265.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55738651 55747177 - Hecw2 protein_coding processed_transcript MGP_C57BL6NJ_T0020266.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55745022 55772553 - Hecw2 protein_coding processed_transcript MGP_C57BL6NJ_T0020267.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55837947 56115304 - MGP_C57BL6NJ_P0020267 Hecw2 protein_coding protein_coding MGP_C57BL6NJ_T0020268.1 MGP_C57BL6NJ_G0016414.1 mouse_genomes_project 1 55848643 56115438 - Hecw2 protein_coding retained_intron MGP_C57BL6NJ_T0000702.1 MGP_C57BL6NJ_G0000618.1 mouse_genomes_project 1 101213249 101214942 - TEC TEC MGP_C57BL6NJ_T0012623.1 MGP_C57BL6NJ_G0010668.1 mouse_genomes_project 1 178102377 178102689 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000539.1 MGP_C57BL6NJ_G0000456.1 mouse_genomes_project 1 24270553 24273086 - TEC TEC MGP_C57BL6NJ_T0000509.1 MGP_C57BL6NJ_G0000428.1 mouse_genomes_project 1 11054360 11056613 - TEC TEC MGP_C57BL6NJ_T0006123.1 MGP_C57BL6NJ_G0005127.1 mouse_genomes_project 1 171669327 171671382 + Gm37083 lincRNA lincRNA MGP_C57BL6NJ_T0012341.1 MGP_C57BL6NJ_G0010386.1 mouse_genomes_project 1 63136100 63137166 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012655.1 MGP_C57BL6NJ_G0010700.1 mouse_genomes_project 1 196020335 196038152 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019442.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14655071 14745403 - MGP_C57BL6NJ_P0019442 Ube2w protein_coding protein_coding MGP_C57BL6NJ_T0019443.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14687965 14708721 - Ube2w protein_coding processed_transcript MGP_C57BL6NJ_T0019444.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14693133 14745580 - MGP_C57BL6NJ_P0019444 Ube2w protein_coding protein_coding MGP_C57BL6NJ_T0019445.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14705258 14745350 - MGP_C57BL6NJ_P0019445 Ube2w protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019446.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14707480 14745375 - Ube2w protein_coding retained_intron MGP_C57BL6NJ_T0019447.1 MGP_C57BL6NJ_G0016247.1 mouse_genomes_project 1 14725880 14745375 - Ube2w protein_coding retained_intron MGP_C57BL6NJ_T0012542.1 MGP_C57BL6NJ_G0010587.1 mouse_genomes_project 1 142781542 142781974 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005937.1 MGP_C57BL6NJ_G0004979.1 mouse_genomes_project 1 75237501 75288095 - 4933417E11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006009.1 MGP_C57BL6NJ_G0005038.1 mouse_genomes_project 1 102174794 102188350 - Gm29601 lincRNA lincRNA MGP_C57BL6NJ_T0002959.1 MGP_C57BL6NJ_G0002794.1 mouse_genomes_project 1 61435970 61454887 + Gm29017 antisense antisense MGP_C57BL6NJ_T0020953.1 MGP_C57BL6NJ_G0016542.1 mouse_genomes_project 1 77925306 77956910 + MGP_C57BL6NJ_P0020953 Vil1 protein_coding protein_coding MGP_C57BL6NJ_T0020954.1 MGP_C57BL6NJ_G0016542.1 mouse_genomes_project 1 77940405 77944371 + MGP_C57BL6NJ_P0020954 Vil1 protein_coding protein_coding MGP_C57BL6NJ_T0020955.1 MGP_C57BL6NJ_G0016542.1 mouse_genomes_project 1 77942768 77944364 + Vil1 protein_coding retained_intron MGP_C57BL6NJ_T0020956.1 MGP_C57BL6NJ_G0016542.1 mouse_genomes_project 1 77945038 77947319 + Vil1 protein_coding retained_intron MGP_C57BL6NJ_T0000939.1 MGP_C57BL6NJ_G0000850.1 mouse_genomes_project 1 208562641 208565333 + TEC TEC MGP_C57BL6NJ_T0012448.1 MGP_C57BL6NJ_G0010493.1 mouse_genomes_project 1 104013859 104014147 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102631.1 MGP_C57BL6NJ_G0040426.1 mouse_genomes_project 1 16263990 16274284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019750.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36538389 36558190 - MGP_C57BL6NJ_P0019750 Lman2l protein_coding protein_coding MGP_C57BL6NJ_T0019751.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36540583 36565407 - MGP_C57BL6NJ_P0019751 Lman2l protein_coding protein_coding MGP_C57BL6NJ_T0019752.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36541704 36560394 - Lman2l protein_coding retained_intron MGP_C57BL6NJ_T0019753.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36541704 36565407 - MGP_C57BL6NJ_P0019753 Lman2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019754.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36541704 36565407 - MGP_C57BL6NJ_P0019754 Lman2l protein_coding protein_coding MGP_C57BL6NJ_T0019755.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36543024 36546885 - MGP_C57BL6NJ_P0019755 Lman2l protein_coding protein_coding MGP_C57BL6NJ_T0019756.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36546910 36565407 - MGP_C57BL6NJ_P0019756 Lman2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019757.1 MGP_C57BL6NJ_G0016314.1 mouse_genomes_project 1 36562266 36565393 - Lman2l protein_coding retained_intron MGP_C57BL6NJ_T0022205.1 MGP_C57BL6NJ_G0016803.1 mouse_genomes_project 1 127357264 127362583 - MGP_C57BL6NJ_P0022205 Tmem177 protein_coding protein_coding MGP_C57BL6NJ_T0020913.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77775257 77780156 - MGP_C57BL6NJ_P0020913 Aamp protein_coding protein_coding MGP_C57BL6NJ_T0020914.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77775263 77779434 - Aamp protein_coding retained_intron MGP_C57BL6NJ_T0020915.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77775263 77780098 - MGP_C57BL6NJ_P0020915 Aamp protein_coding protein_coding MGP_C57BL6NJ_T0020916.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77776350 77779397 - MGP_C57BL6NJ_P0020916 Aamp protein_coding protein_coding MGP_C57BL6NJ_T0020917.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77776477 77778560 - Aamp protein_coding retained_intron MGP_C57BL6NJ_T0020918.1 MGP_C57BL6NJ_G0016536.1 mouse_genomes_project 1 77778613 77779839 - MGP_C57BL6NJ_P0020918 Aamp protein_coding protein_coding MGP_C57BL6NJ_T0024736.1 MGP_C57BL6NJ_G0017353.1 mouse_genomes_project 1 205603091 205940033 + MGP_C57BL6NJ_P0024736 Kcnh1 protein_coding protein_coding MGP_C57BL6NJ_T0024737.1 MGP_C57BL6NJ_G0017353.1 mouse_genomes_project 1 205603091 205940033 + MGP_C57BL6NJ_P0024737 Kcnh1 protein_coding protein_coding MGP_C57BL6NJ_T0024738.1 MGP_C57BL6NJ_G0017353.1 mouse_genomes_project 1 205865445 205940033 + MGP_C57BL6NJ_P0024738 Kcnh1 protein_coding protein_coding MGP_C57BL6NJ_T0012227.1 MGP_C57BL6NJ_G0010272.1 mouse_genomes_project 1 30541371 30542095 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006091.1 MGP_C57BL6NJ_G0005103.1 mouse_genomes_project 1 148504600 148510251 + Gm34816 lincRNA lincRNA MGP_C57BL6NJ_T0000657.1 MGP_C57BL6NJ_G0000573.1 mouse_genomes_project 1 83672255 83674046 + TEC TEC MGP_C57BL6NJ_T0012538.1 MGP_C57BL6NJ_G0010583.1 mouse_genomes_project 1 139643865 139645078 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012381.1 MGP_C57BL6NJ_G0010426.1 mouse_genomes_project 1 74913678 74914667 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024095.1 MGP_C57BL6NJ_G0017206.1 mouse_genomes_project 1 185172385 185173376 + MGP_C57BL6NJ_P0024095 Olfr418 protein_coding protein_coding MGP_C57BL6NJ_T0022006.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103490029 103516539 + MGP_C57BL6NJ_P0022006 Gin1 protein_coding protein_coding MGP_C57BL6NJ_T0022007.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103490036 103497996 + MGP_C57BL6NJ_P0022007 Gin1 protein_coding protein_coding MGP_C57BL6NJ_T0022008.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103490054 103517279 + MGP_C57BL6NJ_P0022008 Gin1 protein_coding protein_coding MGP_C57BL6NJ_T0022009.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103490058 103490863 + Gin1 protein_coding processed_transcript MGP_C57BL6NJ_T0022010.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103490067 103516576 + MGP_C57BL6NJ_P0022010 Gin1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022011.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103493571 103495897 + Gin1 protein_coding retained_intron MGP_C57BL6NJ_T0022012.1 MGP_C57BL6NJ_G0016759.1 mouse_genomes_project 1 103497255 103506161 + MGP_C57BL6NJ_P0022012 Gin1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012263.1 MGP_C57BL6NJ_G0010308.1 mouse_genomes_project 1 39594701 39594984 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019389.1 MGP_C57BL6NJ_G0016234.1 mouse_genomes_project 1 11459827 11486465 - MGP_C57BL6NJ_P0019389 Tram1 protein_coding protein_coding MGP_C57BL6NJ_T0019390.1 MGP_C57BL6NJ_G0016234.1 mouse_genomes_project 1 11472703 11476358 - Tram1 protein_coding retained_intron MGP_C57BL6NJ_T0019391.1 MGP_C57BL6NJ_G0016234.1 mouse_genomes_project 1 11474677 11486430 - MGP_C57BL6NJ_P0019391 Tram1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000760.1 MGP_C57BL6NJ_G0000676.1 mouse_genomes_project 1 140425022 140425529 - TEC TEC MGP_C57BL6NJ_T0006125.1 MGP_C57BL6NJ_G0005129.1 mouse_genomes_project 1 172855670 172866160 + Gm31925 lincRNA lincRNA MGP_C57BL6NJ_T0006126.1 MGP_C57BL6NJ_G0005129.1 mouse_genomes_project 1 172857359 172868386 + Gm31925 lincRNA lincRNA MGP_C57BL6NJ_T0012595.1 MGP_C57BL6NJ_G0010640.1 mouse_genomes_project 1 166679417 166679618 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000840.1 MGP_C57BL6NJ_G0000754.1 mouse_genomes_project 1 171132367 171133519 - TEC TEC MGP_C57BL6NJ_T0024136.1 MGP_C57BL6NJ_G0017219.1 mouse_genomes_project 1 186115994 186118449 + MGP_C57BL6NJ_P0024136 Olfr433 protein_coding protein_coding MGP_C57BL6NJ_T0100916.1 MGP_C57BL6NJ_G0038962.1 mouse_genomes_project 1 163738757 163738897 + Gm25588 snoRNA snoRNA MGP_C57BL6NJ_T0024255.1 MGP_C57BL6NJ_G0017255.1 mouse_genomes_project 1 190614952 190628407 - MGP_C57BL6NJ_P0024255 Hnrnpu protein_coding protein_coding MGP_C57BL6NJ_T0024256.1 MGP_C57BL6NJ_G0017255.1 mouse_genomes_project 1 190615441 190620930 - Hnrnpu protein_coding retained_intron MGP_C57BL6NJ_T0024257.1 MGP_C57BL6NJ_G0017255.1 mouse_genomes_project 1 190622475 190623536 - Hnrnpu protein_coding retained_intron MGP_C57BL6NJ_T0024258.1 MGP_C57BL6NJ_G0017255.1 mouse_genomes_project 1 190622712 190625156 - Hnrnpu protein_coding processed_transcript MGP_C57BL6NJ_T0024259.1 MGP_C57BL6NJ_G0017255.1 mouse_genomes_project 1 190626251 190627015 - Hnrnpu protein_coding retained_intron MGP_C57BL6NJ_T0019409.1 MGP_C57BL6NJ_G0016240.1 mouse_genomes_project 1 13310994 13757803 + MGP_C57BL6NJ_P0019409 Kcnb2 protein_coding protein_coding MGP_C57BL6NJ_T0019410.1 MGP_C57BL6NJ_G0016240.1 mouse_genomes_project 1 13338323 13770265 + MGP_C57BL6NJ_P0019410 Kcnb2 protein_coding protein_coding MGP_C57BL6NJ_T0099650.1 MGP_C57BL6NJ_G0037696.1 mouse_genomes_project 1 183447116 183447171 - Gm26412 snRNA snRNA MGP_C57BL6NJ_T0022984.1 MGP_C57BL6NJ_G0016974.1 mouse_genomes_project 1 156050321 156533336 + MGP_C57BL6NJ_P0022984 Brinp3 protein_coding protein_coding MGP_C57BL6NJ_T0022985.1 MGP_C57BL6NJ_G0016974.1 mouse_genomes_project 1 156053175 156353497 + MGP_C57BL6NJ_P0022985 Brinp3 protein_coding protein_coding MGP_C57BL6NJ_T0022986.1 MGP_C57BL6NJ_G0016974.1 mouse_genomes_project 1 156053248 156533337 + MGP_C57BL6NJ_P0022986 Brinp3 protein_coding protein_coding MGP_C57BL6NJ_T0022987.1 MGP_C57BL6NJ_G0016974.1 mouse_genomes_project 1 156053265 156533331 + MGP_C57BL6NJ_P0022987 Brinp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022988.1 MGP_C57BL6NJ_G0016974.1 mouse_genomes_project 1 156053299 156078909 + Brinp3 protein_coding retained_intron MGP_C57BL6NJ_T0022884.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147877260 147895416 - MGP_C57BL6NJ_P0022884 Lhx9 protein_coding protein_coding MGP_C57BL6NJ_T0022885.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147877260 147901989 - MGP_C57BL6NJ_P0022885 Lhx9 protein_coding protein_coding MGP_C57BL6NJ_T0022886.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147877260 147899888 - MGP_C57BL6NJ_P0022886 Lhx9 protein_coding protein_coding MGP_C57BL6NJ_T0022887.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147881220 147902128 - MGP_C57BL6NJ_P0022887 Lhx9 protein_coding protein_coding MGP_C57BL6NJ_T0022888.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147883022 147895388 - MGP_C57BL6NJ_P0022888 Lhx9 protein_coding protein_coding MGP_C57BL6NJ_T0022889.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147884727 147886655 - Lhx9 protein_coding retained_intron MGP_C57BL6NJ_T0022890.1 MGP_C57BL6NJ_G0016952.1 mouse_genomes_project 1 147885863 147895413 - MGP_C57BL6NJ_P0022890 Lhx9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022317.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136103705 136271417 - MGP_C57BL6NJ_P0022317 Zranb3 protein_coding protein_coding MGP_C57BL6NJ_T0022318.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136104191 136271956 - MGP_C57BL6NJ_P0022318 Zranb3 protein_coding protein_coding MGP_C57BL6NJ_T0022319.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136114652 136122312 - Zranb3 protein_coding processed_transcript MGP_C57BL6NJ_T0022320.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136138141 136272002 - Zranb3 protein_coding processed_transcript MGP_C57BL6NJ_T0022321.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136149337 136271418 - Zranb3 protein_coding retained_intron MGP_C57BL6NJ_T0022322.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136149724 136172390 - Zranb3 protein_coding processed_transcript MGP_C57BL6NJ_T0022323.1 MGP_C57BL6NJ_G0016829.1 mouse_genomes_project 1 136214312 136271409 - Zranb3 protein_coding retained_intron MGP_C57BL6NJ_T0100924.1 MGP_C57BL6NJ_G0038970.1 mouse_genomes_project 1 171934268 171934328 + Gm23212 snoRNA snoRNA MGP_C57BL6NJ_T0012307.1 MGP_C57BL6NJ_G0010352.1 mouse_genomes_project 1 51727627 51728353 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009690.1 MGP_C57BL6NJ_G0007775.1 mouse_genomes_project 1 77699025 77699092 - Mir1928 miRNA miRNA MGP_C57BL6NJ_T0099567.1 MGP_C57BL6NJ_G0037613.1 mouse_genomes_project 1 858432 858490 - Gm27396 snRNA snRNA MGP_C57BL6NJ_T0000549.1 MGP_C57BL6NJ_G0000466.1 mouse_genomes_project 1 24759859 24764409 - TEC TEC MGP_C57BL6NJ_T0012248.1 MGP_C57BL6NJ_G0010293.1 mouse_genomes_project 1 34524620 34524855 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000828.1 MGP_C57BL6NJ_G0000742.1 mouse_genomes_project 1 167410018 167413839 - TEC TEC MGP_C57BL6NJ_T0005999.1 MGP_C57BL6NJ_G0005029.1 mouse_genomes_project 1 97111937 97115515 + Gm26720 lincRNA lincRNA MGP_C57BL6NJ_T0009675.1 MGP_C57BL6NJ_G0007760.1 mouse_genomes_project 1 48770363 48770468 - Mir6350 miRNA miRNA MGP_C57BL6NJ_T0000656.1 MGP_C57BL6NJ_G0000572.1 mouse_genomes_project 1 83526753 83528177 - TEC TEC MGP_C57BL6NJ_T0012352.1 MGP_C57BL6NJ_G0010397.1 mouse_genomes_project 1 65184832 65185948 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000695.1 MGP_C57BL6NJ_G0000611.1 mouse_genomes_project 1 95913524 95915383 - TEC TEC MGP_C57BL6NJ_T0012168.1 MGP_C57BL6NJ_G0010213.1 mouse_genomes_project 1 7390869 7391226 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023176.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 164768233 165116636 - MGP_C57BL6NJ_P0023176 Cacna1e protein_coding protein_coding MGP_C57BL6NJ_T0023177.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 164770021 165116200 - MGP_C57BL6NJ_P0023177 Cacna1e protein_coding protein_coding MGP_C57BL6NJ_T0023178.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 164852082 164859695 - Cacna1e protein_coding retained_intron MGP_C57BL6NJ_T0023179.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 164864073 165209459 - Cacna1e protein_coding retained_intron MGP_C57BL6NJ_T0023180.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 165089436 165282160 - Cacna1e protein_coding retained_intron MGP_C57BL6NJ_T0023181.1 MGP_C57BL6NJ_G0017011.1 mouse_genomes_project 1 165279824 165281683 - Cacna1e protein_coding retained_intron MGP_C57BL6NJ_T0022703.1 MGP_C57BL6NJ_G0016916.1 mouse_genomes_project 1 143370113 143472096 + MGP_C57BL6NJ_P0022703 Syt2 protein_coding protein_coding MGP_C57BL6NJ_T0022704.1 MGP_C57BL6NJ_G0016916.1 mouse_genomes_project 1 143370117 143479693 + MGP_C57BL6NJ_P0022704 Syt2 protein_coding protein_coding MGP_C57BL6NJ_T0022705.1 MGP_C57BL6NJ_G0016916.1 mouse_genomes_project 1 143439906 143483425 + MGP_C57BL6NJ_P0022705 Syt2 protein_coding protein_coding MGP_C57BL6NJ_T0022706.1 MGP_C57BL6NJ_G0016916.1 mouse_genomes_project 1 143478852 143492869 + Syt2 protein_coding processed_transcript MGP_C57BL6NJ_T0019411.1 MGP_C57BL6NJ_G0016241.1 mouse_genomes_project 1 13855686 13896679 + MGP_C57BL6NJ_P0019411 Terf1 protein_coding protein_coding MGP_C57BL6NJ_T0019412.1 MGP_C57BL6NJ_G0016241.1 mouse_genomes_project 1 13855697 13872577 + Terf1 protein_coding processed_transcript MGP_C57BL6NJ_T0019413.1 MGP_C57BL6NJ_G0016241.1 mouse_genomes_project 1 13855704 13896097 + MGP_C57BL6NJ_P0019413 Terf1 protein_coding protein_coding MGP_C57BL6NJ_T0019414.1 MGP_C57BL6NJ_G0016241.1 mouse_genomes_project 1 13857681 13872665 + Terf1 protein_coding retained_intron MGP_C57BL6NJ_T0003048.1 MGP_C57BL6NJ_G0002860.1 mouse_genomes_project 1 145094531 145109531 + Gm26781 antisense antisense MGP_C57BL6NJ_T0020427.1 MGP_C57BL6NJ_G0016444.1 mouse_genomes_project 1 60671305 60719411 - MGP_C57BL6NJ_P0020427 Orc2 protein_coding protein_coding MGP_C57BL6NJ_T0020428.1 MGP_C57BL6NJ_G0016444.1 mouse_genomes_project 1 60672738 60715718 - MGP_C57BL6NJ_P0020428 Orc2 protein_coding protein_coding MGP_C57BL6NJ_T0020429.1 MGP_C57BL6NJ_G0016444.1 mouse_genomes_project 1 60689417 60690556 - Orc2 protein_coding retained_intron MGP_C57BL6NJ_T0020430.1 MGP_C57BL6NJ_G0016444.1 mouse_genomes_project 1 60694182 60719227 - MGP_C57BL6NJ_P0020430 Orc2 protein_coding protein_coding MGP_C57BL6NJ_T0020431.1 MGP_C57BL6NJ_G0016444.1 mouse_genomes_project 1 60713129 60719257 - MGP_C57BL6NJ_P0020431 Orc2 protein_coding protein_coding MGP_C57BL6NJ_T0024022.1 MGP_C57BL6NJ_G0017182.1 mouse_genomes_project 1 183962626 183972693 - MGP_C57BL6NJ_P0024022 Pea15a protein_coding protein_coding MGP_C57BL6NJ_T0024023.1 MGP_C57BL6NJ_G0017182.1 mouse_genomes_project 1 183962626 183972693 - MGP_C57BL6NJ_P0024023 Pea15a protein_coding protein_coding MGP_C57BL6NJ_T0024024.1 MGP_C57BL6NJ_G0017182.1 mouse_genomes_project 1 183964314 183965714 - Pea15a protein_coding processed_transcript MGP_C57BL6NJ_T0024025.1 MGP_C57BL6NJ_G0017182.1 mouse_genomes_project 1 183965059 183972586 - MGP_C57BL6NJ_P0024025 Pea15a protein_coding protein_coding MGP_C57BL6NJ_T0024026.1 MGP_C57BL6NJ_G0017182.1 mouse_genomes_project 1 183965673 183972693 - Pea15a protein_coding retained_intron MGP_C57BL6NJ_T0000838.1 MGP_C57BL6NJ_G0000752.1 mouse_genomes_project 1 170364692 170366929 + TEC TEC MGP_C57BL6NJ_T0024252.1 MGP_C57BL6NJ_G0017254.1 mouse_genomes_project 1 190613683 190628338 - MGP_C57BL6NJ_P0024252 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024253.1 MGP_C57BL6NJ_G0017254.1 mouse_genomes_project 1 190613743 190621231 - MGP_C57BL6NJ_P0024253 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024254.1 MGP_C57BL6NJ_G0017254.1 mouse_genomes_project 1 190614229 190620017 - MGP_C57BL6NJ_P0024254 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021781.1 MGP_C57BL6NJ_G0016706.1 mouse_genomes_project 1 96520396 96563842 - MGP_C57BL6NJ_P0021781 Per2 protein_coding protein_coding MGP_C57BL6NJ_T0021782.1 MGP_C57BL6NJ_G0016706.1 mouse_genomes_project 1 96552241 96554385 - Per2 protein_coding processed_transcript MGP_C57BL6NJ_T0005899.1 MGP_C57BL6NJ_G0004950.1 mouse_genomes_project 1 59366420 59380749 - BC055402 lincRNA lincRNA MGP_C57BL6NJ_T0022046.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111923928 111950393 + 2310035C23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0022047.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111923928 112021088 + MGP_C57BL6NJ_P0022047 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022048.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111923950 112021091 + MGP_C57BL6NJ_P0022048 2310035C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0022049.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111923980 112022207 + MGP_C57BL6NJ_P0022049 2310035C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0022050.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111923990 112020727 + MGP_C57BL6NJ_P0022050 2310035C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0022051.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111924004 111925218 + 2310035C23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0022052.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111924508 112005513 + 2310035C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0022053.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111959837 112022202 + MGP_C57BL6NJ_P0022053 2310035C23Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022054.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111966985 111980452 + 2310035C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0022055.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 111995545 112000776 + 2310035C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0022056.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 112007227 112020541 + 2310035C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0022057.1 MGP_C57BL6NJ_G0016766.1 mouse_genomes_project 1 112007995 112018005 + 2310035C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0011519.1 MGP_C57BL6NJ_G0009604.1 mouse_genomes_project 1 197676956 197677231 - Gm23780 misc_RNA misc_RNA MGP_C57BL6NJ_T0099630.1 MGP_C57BL6NJ_G0037676.1 mouse_genomes_project 1 144140487 144140593 - Gm22796 snRNA snRNA MGP_C57BL6NJ_T0020617.1 MGP_C57BL6NJ_G0016475.1 mouse_genomes_project 1 65508684 65649245 - MGP_C57BL6NJ_P0020617 Ino80d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020618.1 MGP_C57BL6NJ_G0016475.1 mouse_genomes_project 1 65610012 65679177 - MGP_C57BL6NJ_P0020618 Ino80d protein_coding protein_coding MGP_C57BL6NJ_T0020619.1 MGP_C57BL6NJ_G0016475.1 mouse_genomes_project 1 65617444 65620871 - Ino80d protein_coding retained_intron MGP_C57BL6NJ_T0020620.1 MGP_C57BL6NJ_G0016475.1 mouse_genomes_project 1 65619459 65679278 - MGP_C57BL6NJ_P0020620 Ino80d protein_coding protein_coding MGP_C57BL6NJ_T0020621.1 MGP_C57BL6NJ_G0016475.1 mouse_genomes_project 1 65619473 65679199 - MGP_C57BL6NJ_P0020621 Ino80d protein_coding protein_coding MGP_C57BL6NJ_T0099624.1 MGP_C57BL6NJ_G0037670.1 mouse_genomes_project 1 136723158 136723263 - Gm25384 snRNA snRNA MGP_C57BL6NJ_T0006154.1 MGP_C57BL6NJ_G0005153.1 mouse_genomes_project 1 182994417 183004817 - lincRNA lincRNA MGP_C57BL6NJ_T0006004.1 MGP_C57BL6NJ_G0005034.1 mouse_genomes_project 1 98329788 98330949 - Gm28086 lincRNA lincRNA MGP_C57BL6NJ_T0020875.1 MGP_C57BL6NJ_G0016526.1 mouse_genomes_project 1 76073204 76075754 + MGP_C57BL6NJ_P0020875 Rpl37a protein_coding protein_coding MGP_C57BL6NJ_T0020312.1 MGP_C57BL6NJ_G0016422.1 mouse_genomes_project 1 57072559 57075735 + MGP_C57BL6NJ_P0020312 Hspe1 protein_coding protein_coding MGP_C57BL6NJ_T0020313.1 MGP_C57BL6NJ_G0016422.1 mouse_genomes_project 1 57072741 57074343 + Hspe1 protein_coding retained_intron MGP_C57BL6NJ_T0021232.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79087804 79103696 + MGP_C57BL6NJ_P0021232 Slc4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021233.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79087834 79089046 + Slc4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021234.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088000 79089577 + MGP_C57BL6NJ_P0021234 Slc4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021235.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088034 79100417 + MGP_C57BL6NJ_P0021235 Slc4a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021236.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088065 79089283 + Slc4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021237.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088071 79089550 + MGP_C57BL6NJ_P0021237 Slc4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021238.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088182 79102408 + Slc4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021239.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79088194 79089073 + Slc4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021240.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79091137 79092921 + MGP_C57BL6NJ_P0021240 Slc4a3 protein_coding protein_coding MGP_C57BL6NJ_T0021241.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79091306 79092668 + Slc4a3 protein_coding retained_intron MGP_C57BL6NJ_T0021242.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79092133 79096664 + MGP_C57BL6NJ_P0021242 Slc4a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021243.1 MGP_C57BL6NJ_G0016585.1 mouse_genomes_project 1 79093247 79095271 + MGP_C57BL6NJ_P0021243 Slc4a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024345.1 MGP_C57BL6NJ_G0017268.1 mouse_genomes_project 1 192774376 192872710 + MGP_C57BL6NJ_P0024345 Itpkb protein_coding protein_coding MGP_C57BL6NJ_T0024346.1 MGP_C57BL6NJ_G0017268.1 mouse_genomes_project 1 192777757 192782338 + Itpkb protein_coding retained_intron MGP_C57BL6NJ_T0003154.1 MGP_C57BL6NJ_G0002941.1 mouse_genomes_project 1 208503108 208523114 - Gm16897 antisense antisense MGP_C57BL6NJ_T0022666.1 MGP_C57BL6NJ_G0016908.1 mouse_genomes_project 1 143035544 143051212 - MGP_C57BL6NJ_P0022666 Tmem183a protein_coding protein_coding MGP_C57BL6NJ_T0022667.1 MGP_C57BL6NJ_G0016908.1 mouse_genomes_project 1 143037129 143051174 - MGP_C57BL6NJ_P0022667 Tmem183a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022668.1 MGP_C57BL6NJ_G0016908.1 mouse_genomes_project 1 143037357 143039461 - Tmem183a protein_coding retained_intron MGP_C57BL6NJ_T0022669.1 MGP_C57BL6NJ_G0016908.1 mouse_genomes_project 1 143044597 143051186 - Tmem183a protein_coding retained_intron MGP_C57BL6NJ_T0022670.1 MGP_C57BL6NJ_G0016908.1 mouse_genomes_project 1 143044863 143050923 - MGP_C57BL6NJ_P0022670 Tmem183a protein_coding protein_coding MGP_C57BL6NJ_T0023959.1 MGP_C57BL6NJ_G0017169.1 mouse_genomes_project 1 183298816 183319700 - MGP_C57BL6NJ_P0023959 Ly9 protein_coding protein_coding MGP_C57BL6NJ_T0023960.1 MGP_C57BL6NJ_G0017169.1 mouse_genomes_project 1 183298824 183319648 - MGP_C57BL6NJ_P0023960 Ly9 protein_coding protein_coding MGP_C57BL6NJ_T0023961.1 MGP_C57BL6NJ_G0017169.1 mouse_genomes_project 1 183298840 183319624 - MGP_C57BL6NJ_P0023961 Ly9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023962.1 MGP_C57BL6NJ_G0017169.1 mouse_genomes_project 1 183303989 183319619 - MGP_C57BL6NJ_P0023962 Ly9 protein_coding protein_coding MGP_C57BL6NJ_T0023963.1 MGP_C57BL6NJ_G0017169.1 mouse_genomes_project 1 183312938 183319650 - Ly9 protein_coding retained_intron MGP_C57BL6NJ_T0005875.1 MGP_C57BL6NJ_G0004931.1 mouse_genomes_project 1 43958467 44016301 - Gm29040 lincRNA lincRNA MGP_C57BL6NJ_T0012445.1 MGP_C57BL6NJ_G0010490.1 mouse_genomes_project 1 102288125 102288876 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012204.1 MGP_C57BL6NJ_G0010249.1 mouse_genomes_project 1 20130067 20132532 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022102.1 MGP_C57BL6NJ_G0016782.1 mouse_genomes_project 1 113946263 113960129 + MGP_C57BL6NJ_P0022102 Serpinb10 protein_coding protein_coding MGP_C57BL6NJ_T0005825.1 MGP_C57BL6NJ_G0004899.1 mouse_genomes_project 1 22344507 22373094 + Gm28822 lincRNA lincRNA MGP_C57BL6NJ_T0012219.1 MGP_C57BL6NJ_G0010264.1 mouse_genomes_project 1 27099903 27100557 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019914.1 MGP_C57BL6NJ_G0016342.1 mouse_genomes_project 1 39080976 39123508 - MGP_C57BL6NJ_P0019914 Lonrf2 protein_coding protein_coding MGP_C57BL6NJ_T0019915.1 MGP_C57BL6NJ_G0016342.1 mouse_genomes_project 1 39081829 39108298 - MGP_C57BL6NJ_P0019915 Lonrf2 protein_coding protein_coding MGP_C57BL6NJ_T0019916.1 MGP_C57BL6NJ_G0016342.1 mouse_genomes_project 1 39122276 39123454 - Lonrf2 protein_coding retained_intron MGP_C57BL6NJ_T0006147.1 MGP_C57BL6NJ_G0005147.1 mouse_genomes_project 1 178312893 178315488 - Gm16701 lincRNA lincRNA MGP_C57BL6NJ_T0023750.1 MGP_C57BL6NJ_G0017121.1 mouse_genomes_project 1 180956206 180992908 - MGP_C57BL6NJ_P0023750 Nuf2 protein_coding protein_coding MGP_C57BL6NJ_T0023751.1 MGP_C57BL6NJ_G0017121.1 mouse_genomes_project 1 180956583 180992872 - MGP_C57BL6NJ_P0023751 Nuf2 protein_coding protein_coding MGP_C57BL6NJ_T0023752.1 MGP_C57BL6NJ_G0017121.1 mouse_genomes_project 1 180964335 180982171 - MGP_C57BL6NJ_P0023752 Nuf2 protein_coding protein_coding MGP_C57BL6NJ_T0023753.1 MGP_C57BL6NJ_G0017121.1 mouse_genomes_project 1 180969471 180992855 - MGP_C57BL6NJ_P0023753 Nuf2 protein_coding protein_coding MGP_C57BL6NJ_T0023754.1 MGP_C57BL6NJ_G0017121.1 mouse_genomes_project 1 180984809 180992862 - Nuf2 protein_coding retained_intron MGP_C57BL6NJ_T0021436.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90230117 90249330 - A630001G21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0021437.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90230117 90292287 - MGP_C57BL6NJ_P0021437 A630001G21Rik protein_coding protein_coding MGP_C57BL6NJ_T0021438.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90230723 90249378 - MGP_C57BL6NJ_P0021438 A630001G21Rik protein_coding protein_coding MGP_C57BL6NJ_T0021439.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90230726 90249330 - MGP_C57BL6NJ_P0021439 A630001G21Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021440.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90231124 90249303 - A630001G21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0021441.1 MGP_C57BL6NJ_G0016628.1 mouse_genomes_project 1 90239634 90249310 - A630001G21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0012422.1 MGP_C57BL6NJ_G0010467.1 mouse_genomes_project 1 92213715 92214773 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011495.1 MGP_C57BL6NJ_G0009580.1 mouse_genomes_project 1 7781194 7781434 + Gm26348 misc_RNA misc_RNA MGP_C57BL6NJ_T0000940.1 MGP_C57BL6NJ_G0000851.1 mouse_genomes_project 1 208592577 208594874 + TEC TEC MGP_C57BL6NJ_T0021029.1 MGP_C57BL6NJ_G0016554.1 mouse_genomes_project 1 78342132 78354075 + MGP_C57BL6NJ_P0021029 Wnt10a protein_coding protein_coding MGP_C57BL6NJ_T0099588.1 MGP_C57BL6NJ_G0037634.1 mouse_genomes_project 1 49775262 49775383 - Gm23240 snRNA snRNA MGP_C57BL6NJ_T0005815.1 MGP_C57BL6NJ_G0004889.1 mouse_genomes_project 1 15320266 15325030 + Gm28783 lincRNA lincRNA MGP_C57BL6NJ_T0022478.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140506179 140526116 + MGP_C57BL6NJ_P0022478 Elk4 protein_coding protein_coding MGP_C57BL6NJ_T0022479.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140506446 140523324 + MGP_C57BL6NJ_P0022479 Elk4 protein_coding protein_coding MGP_C57BL6NJ_T0022480.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140506669 140514261 + Elk4 protein_coding processed_transcript MGP_C57BL6NJ_T0022481.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140506679 140514119 + Elk4 protein_coding processed_transcript MGP_C57BL6NJ_T0022482.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140506867 140517963 + MGP_C57BL6NJ_P0022482 Elk4 protein_coding protein_coding MGP_C57BL6NJ_T0022483.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140517465 140532287 + MGP_C57BL6NJ_P0022483 Elk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022484.1 MGP_C57BL6NJ_G0016868.1 mouse_genomes_project 1 140518100 140531369 + Elk4 protein_coding processed_transcript MGP_C57BL6NJ_T0020393.1 MGP_C57BL6NJ_G0016439.1 mouse_genomes_project 1 60489942 60586725 + MGP_C57BL6NJ_P0020393 Aox2 protein_coding protein_coding MGP_C57BL6NJ_T0005884.1 MGP_C57BL6NJ_G0004939.1 mouse_genomes_project 1 52521913 52523365 + Gm28322 lincRNA lincRNA MGP_C57BL6NJ_T0024091.1 MGP_C57BL6NJ_G0017203.1 mouse_genomes_project 1 185023966 185024908 + MGP_C57BL6NJ_P0024091 Olfr218 protein_coding protein_coding MGP_C57BL6NJ_T0102674.1 MGP_C57BL6NJ_G0040469.1 mouse_genomes_project 1 124878267 125039930 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0020573.1 MGP_C57BL6NJ_G0016467.1 mouse_genomes_project 1 62761636 62792170 + Cyp20a1 protein_coding retained_intron MGP_C57BL6NJ_T0020574.1 MGP_C57BL6NJ_G0016467.1 mouse_genomes_project 1 62761636 62808509 + MGP_C57BL6NJ_P0020574 Cyp20a1 protein_coding protein_coding MGP_C57BL6NJ_T0020575.1 MGP_C57BL6NJ_G0016467.1 mouse_genomes_project 1 62761636 62808509 + MGP_C57BL6NJ_P0020575 Cyp20a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022288.1 MGP_C57BL6NJ_G0016823.1 mouse_genomes_project 1 135309683 135497649 + Mgat5 protein_coding retained_intron MGP_C57BL6NJ_T0022289.1 MGP_C57BL6NJ_G0016823.1 mouse_genomes_project 1 135309686 135612049 + MGP_C57BL6NJ_P0022289 Mgat5 protein_coding protein_coding MGP_C57BL6NJ_T0022290.1 MGP_C57BL6NJ_G0016823.1 mouse_genomes_project 1 135309696 135508228 + Mgat5 protein_coding retained_intron MGP_C57BL6NJ_T0022291.1 MGP_C57BL6NJ_G0016823.1 mouse_genomes_project 1 135412268 135607417 + MGP_C57BL6NJ_P0022291 Mgat5 protein_coding protein_coding MGP_C57BL6NJ_T0021330.1 MGP_C57BL6NJ_G0016607.1 mouse_genomes_project 1 86566251 86718695 - MGP_C57BL6NJ_P0021330 Col4a4 protein_coding protein_coding MGP_C57BL6NJ_T0021331.1 MGP_C57BL6NJ_G0016607.1 mouse_genomes_project 1 86571921 86702718 - MGP_C57BL6NJ_P0021331 Col4a4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0021332.1 MGP_C57BL6NJ_G0016607.1 mouse_genomes_project 1 86669020 86718638 - Col4a4 protein_coding retained_intron MGP_C57BL6NJ_T0009687.1 MGP_C57BL6NJ_G0007772.1 mouse_genomes_project 1 67059261 67059331 + Gm25748 miRNA miRNA MGP_C57BL6NJ_T0020097.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46187688 46203498 + Col3a1 protein_coding retained_intron MGP_C57BL6NJ_T0020098.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46187688 46232092 + MGP_C57BL6NJ_P0020098 Col3a1 protein_coding protein_coding MGP_C57BL6NJ_T0020099.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46187797 46193167 + Col3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0020100.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46206068 46207374 + Col3a1 protein_coding retained_intron MGP_C57BL6NJ_T0020101.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46213889 46217102 + Col3a1 protein_coding retained_intron MGP_C57BL6NJ_T0020102.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46215455 46222563 + MGP_C57BL6NJ_P0020102 Col3a1 protein_coding protein_coding MGP_C57BL6NJ_T0020103.1 MGP_C57BL6NJ_G0016383.1 mouse_genomes_project 1 46221792 46230152 + MGP_C57BL6NJ_P0020103 Col3a1 protein_coding protein_coding MGP_C57BL6NJ_T0019685.1 MGP_C57BL6NJ_G0016302.1 mouse_genomes_project 1 34444161 34454241 + MGP_C57BL6NJ_P0019685 Cfc1 protein_coding protein_coding MGP_C57BL6NJ_T0023969.1 MGP_C57BL6NJ_G0017172.1 mouse_genomes_project 1 183485105 183525398 + MGP_C57BL6NJ_P0023969 Slamf1 protein_coding protein_coding MGP_C57BL6NJ_T0023970.1 MGP_C57BL6NJ_G0017172.1 mouse_genomes_project 1 183485133 183518689 + Slamf1 protein_coding retained_intron MGP_C57BL6NJ_T0102667.1 MGP_C57BL6NJ_G0040462.1 mouse_genomes_project 1 109296131 109408346 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012428.1 MGP_C57BL6NJ_G0010473.1 mouse_genomes_project 1 92213722 92214690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002967.1 MGP_C57BL6NJ_G0002800.1 mouse_genomes_project 1 65260521 65263872 - Gm29083 antisense antisense MGP_C57BL6NJ_T0023584.1 MGP_C57BL6NJ_G0017084.1 mouse_genomes_project 1 175371087 175387428 + MGP_C57BL6NJ_P0023584 Slc19a2 protein_coding protein_coding MGP_C57BL6NJ_T0023585.1 MGP_C57BL6NJ_G0017084.1 mouse_genomes_project 1 175371096 175387412 + MGP_C57BL6NJ_P0023585 Slc19a2 protein_coding protein_coding MGP_C57BL6NJ_T0023586.1 MGP_C57BL6NJ_G0017084.1 mouse_genomes_project 1 175371294 175385561 + MGP_C57BL6NJ_P0023586 Slc19a2 protein_coding protein_coding MGP_C57BL6NJ_T0023587.1 MGP_C57BL6NJ_G0017084.1 mouse_genomes_project 1 175384395 175385494 + Slc19a2 protein_coding retained_intron MGP_C57BL6NJ_T0023464.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172770544 172837636 - MGP_C57BL6NJ_P0023464 Suco protein_coding protein_coding MGP_C57BL6NJ_T0023465.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172774833 172777156 - Suco protein_coding retained_intron MGP_C57BL6NJ_T0023466.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172782563 172783718 - Suco protein_coding retained_intron MGP_C57BL6NJ_T0023467.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172789593 172799056 - Suco protein_coding processed_transcript MGP_C57BL6NJ_T0023468.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172793224 172798616 - Suco protein_coding retained_intron MGP_C57BL6NJ_T0023469.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172799110 172807889 - MGP_C57BL6NJ_P0023469 Suco protein_coding protein_coding MGP_C57BL6NJ_T0023470.1 MGP_C57BL6NJ_G0017058.1 mouse_genomes_project 1 172806974 172813264 - MGP_C57BL6NJ_P0023470 Suco protein_coding protein_coding MGP_C57BL6NJ_T0003123.1 MGP_C57BL6NJ_G0002918.1 mouse_genomes_project 1 198300484 198312945 - 9630028B13Rik antisense antisense MGP_C57BL6NJ_T0006120.1 MGP_C57BL6NJ_G0005126.1 mouse_genomes_project 1 170866913 170870097 - 4930562F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006121.1 MGP_C57BL6NJ_G0005126.1 mouse_genomes_project 1 170866913 170870164 - 4930562F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006122.1 MGP_C57BL6NJ_G0005126.1 mouse_genomes_project 1 170867148 170870121 - 4930562F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0024082.1 MGP_C57BL6NJ_G0017197.1 mouse_genomes_project 1 184435977 184438164 - MGP_C57BL6NJ_P0024082 Dusp23 protein_coding protein_coding MGP_C57BL6NJ_T0000719.1 MGP_C57BL6NJ_G0000635.1 mouse_genomes_project 1 118575679 118576081 + TEC TEC MGP_C57BL6NJ_T0019295.1 MGP_C57BL6NJ_G0016223.1 mouse_genomes_project 1 7571198 7589381 - MGP_C57BL6NJ_P0019295 Ppp1r42 protein_coding protein_coding MGP_C57BL6NJ_T0019296.1 MGP_C57BL6NJ_G0016223.1 mouse_genomes_project 1 7571198 7607858 - MGP_C57BL6NJ_P0019296 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019297.1 MGP_C57BL6NJ_G0016223.1 mouse_genomes_project 1 7571394 7607768 - MGP_C57BL6NJ_P0019297 Ppp1r42 protein_coding protein_coding MGP_C57BL6NJ_T0019298.1 MGP_C57BL6NJ_G0016223.1 mouse_genomes_project 1 7571399 7613519 - MGP_C57BL6NJ_P0019298 Ppp1r42 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019299.1 MGP_C57BL6NJ_G0016223.1 mouse_genomes_project 1 7598746 7613519 - Ppp1r42 protein_coding retained_intron MGP_C57BL6NJ_T0024375.1 MGP_C57BL6NJ_G0017278.1 mouse_genomes_project 1 193445368 193449164 + MGP_C57BL6NJ_P0024375 Pycr2 protein_coding protein_coding MGP_C57BL6NJ_T0024376.1 MGP_C57BL6NJ_G0017278.1 mouse_genomes_project 1 193445384 193447695 + Pycr2 protein_coding retained_intron MGP_C57BL6NJ_T0024377.1 MGP_C57BL6NJ_G0017278.1 mouse_genomes_project 1 193445398 193449163 + Pycr2 protein_coding retained_intron MGP_C57BL6NJ_T0024378.1 MGP_C57BL6NJ_G0017278.1 mouse_genomes_project 1 193446990 193447978 + Pycr2 protein_coding retained_intron MGP_C57BL6NJ_T0023312.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659466 167668976 - MGP_C57BL6NJ_P0023312 Tex35 protein_coding protein_coding MGP_C57BL6NJ_T0023313.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659466 167668976 - MGP_C57BL6NJ_P0023313 Tex35 protein_coding protein_coding MGP_C57BL6NJ_T0023314.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659474 167668975 - MGP_C57BL6NJ_P0023314 Tex35 protein_coding protein_coding MGP_C57BL6NJ_T0023315.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659481 167669006 - MGP_C57BL6NJ_P0023315 Tex35 protein_coding protein_coding MGP_C57BL6NJ_T0023316.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659640 167668714 - MGP_C57BL6NJ_P0023316 Tex35 protein_coding protein_coding MGP_C57BL6NJ_T0023317.1 MGP_C57BL6NJ_G0017033.1 mouse_genomes_project 1 167659642 167668971 - MGP_C57BL6NJ_P0023317 Tex35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021077.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78693607 78704674 - MGP_C57BL6NJ_P0021077 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0021078.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78693612 78704944 - MGP_C57BL6NJ_P0021078 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0021079.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78693612 78704671 - MGP_C57BL6NJ_P0021079 Atg9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021080.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78693612 78703130 - MGP_C57BL6NJ_P0021080 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0021081.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78693613 78704671 - MGP_C57BL6NJ_P0021081 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0021082.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78695737 78698795 - MGP_C57BL6NJ_P0021082 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0021083.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78700304 78704473 - Atg9a protein_coding retained_intron MGP_C57BL6NJ_T0021084.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78702516 78704710 - Atg9a protein_coding retained_intron MGP_C57BL6NJ_T0021085.1 MGP_C57BL6NJ_G0016566.1 mouse_genomes_project 1 78702864 78704462 - MGP_C57BL6NJ_P0021085 Atg9a protein_coding protein_coding MGP_C57BL6NJ_T0102633.1 MGP_C57BL6NJ_G0040428.1 mouse_genomes_project 1 19690451 19698807 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003083.1 MGP_C57BL6NJ_G0002887.1 mouse_genomes_project 1 175261917 175264802 - Gm16587 antisense antisense MGP_C57BL6NJ_T0024138.1 MGP_C57BL6NJ_G0017221.1 mouse_genomes_project 1 186147076 186148030 + MGP_C57BL6NJ_P0024138 Olfr430 protein_coding protein_coding MGP_C57BL6NJ_T0102636.1 MGP_C57BL6NJ_G0040431.1 mouse_genomes_project 1 19951613 19952708 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000788.1 MGP_C57BL6NJ_G0000702.1 mouse_genomes_project 1 147589738 147592142 - TEC TEC MGP_C57BL6NJ_T0000705.1 MGP_C57BL6NJ_G0000621.1 mouse_genomes_project 1 103222861 103224046 - TEC TEC MGP_C57BL6NJ_T0005821.1 MGP_C57BL6NJ_G0004895.1 mouse_genomes_project 1 19387294 19389122 - 6720483E21Rik lincRNA lincRNA MGP_C57BL6NJ_T0023820.1 MGP_C57BL6NJ_G0017141.1 mouse_genomes_project 1 182623844 182634676 + MGP_C57BL6NJ_P0023820 Fcgr4 protein_coding protein_coding MGP_C57BL6NJ_T0012440.1 MGP_C57BL6NJ_G0010485.1 mouse_genomes_project 1 98539035 98539581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022997.1 MGP_C57BL6NJ_G0016977.1 mouse_genomes_project 1 160339588 160354350 + MGP_C57BL6NJ_P0022997 Pdc protein_coding protein_coding MGP_C57BL6NJ_T0022998.1 MGP_C57BL6NJ_G0016977.1 mouse_genomes_project 1 160339588 160354349 + MGP_C57BL6NJ_P0022998 Pdc protein_coding protein_coding MGP_C57BL6NJ_T0022999.1 MGP_C57BL6NJ_G0016977.1 mouse_genomes_project 1 160339597 160353766 + MGP_C57BL6NJ_P0022999 Pdc protein_coding protein_coding MGP_C57BL6NJ_T0023000.1 MGP_C57BL6NJ_G0016977.1 mouse_genomes_project 1 160339600 160354347 + MGP_C57BL6NJ_P0023000 Pdc protein_coding protein_coding MGP_C57BL6NJ_T0012347.1 MGP_C57BL6NJ_G0010392.1 mouse_genomes_project 1 63597526 63600153 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009669.1 MGP_C57BL6NJ_G0007754.1 mouse_genomes_project 1 36629600 36629741 + miRNA miRNA MGP_C57BL6NJ_T0098926.1 MGP_C57BL6NJ_G0036990.1 mouse_genomes_project 1 80809420 80809514 + Gm25974 rRNA rRNA MGP_C57BL6NJ_T0021371.1 MGP_C57BL6NJ_G0016615.1 mouse_genomes_project 1 87376851 87400568 + Daw1 protein_coding retained_intron MGP_C57BL6NJ_T0021372.1 MGP_C57BL6NJ_G0016615.1 mouse_genomes_project 1 87376861 87443386 + MGP_C57BL6NJ_P0021372 Daw1 protein_coding protein_coding MGP_C57BL6NJ_T0021373.1 MGP_C57BL6NJ_G0016615.1 mouse_genomes_project 1 87376861 87443380 + MGP_C57BL6NJ_P0021373 Daw1 protein_coding protein_coding MGP_C57BL6NJ_T0021374.1 MGP_C57BL6NJ_G0016615.1 mouse_genomes_project 1 87376868 87443382 + MGP_C57BL6NJ_P0021374 Daw1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021375.1 MGP_C57BL6NJ_G0016615.1 mouse_genomes_project 1 87376880 87443386 + MGP_C57BL6NJ_P0021375 Daw1 protein_coding protein_coding MGP_C57BL6NJ_T0022593.1 MGP_C57BL6NJ_G0016890.1 mouse_genomes_project 1 141972655 141984130 + Etnk2 protein_coding retained_intron MGP_C57BL6NJ_T0022594.1 MGP_C57BL6NJ_G0016890.1 mouse_genomes_project 1 141972843 141989394 + MGP_C57BL6NJ_P0022594 Etnk2 protein_coding protein_coding MGP_C57BL6NJ_T0022595.1 MGP_C57BL6NJ_G0016890.1 mouse_genomes_project 1 141974843 141978214 + Etnk2 protein_coding retained_intron MGP_C57BL6NJ_T0022596.1 MGP_C57BL6NJ_G0016890.1 mouse_genomes_project 1 141976366 141986059 + Etnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0000878.1 MGP_C57BL6NJ_G0000792.1 mouse_genomes_project 1 188321279 188323714 + TEC TEC MGP_C57BL6NJ_T0024046.1 MGP_C57BL6NJ_G0017188.1 mouse_genomes_project 1 184116960 184153987 + MGP_C57BL6NJ_P0024046 Kcnj10 protein_coding protein_coding MGP_C57BL6NJ_T0006191.1 MGP_C57BL6NJ_G0005179.1 mouse_genomes_project 1 197398851 197418342 - Gm37800 lincRNA lincRNA MGP_C57BL6NJ_T0006192.1 MGP_C57BL6NJ_G0005179.1 mouse_genomes_project 1 197399489 197406846 - Gm37800 lincRNA lincRNA MGP_C57BL6NJ_T0021199.1 MGP_C57BL6NJ_G0016580.1 mouse_genomes_project 1 79006530 79011241 - MGP_C57BL6NJ_P0021199 Chpf protein_coding protein_coding MGP_C57BL6NJ_T0021200.1 MGP_C57BL6NJ_G0016580.1 mouse_genomes_project 1 79006536 79011277 - MGP_C57BL6NJ_P0021200 Chpf protein_coding protein_coding MGP_C57BL6NJ_T0021201.1 MGP_C57BL6NJ_G0016580.1 mouse_genomes_project 1 79006537 79010708 - Chpf protein_coding retained_intron MGP_C57BL6NJ_T0021202.1 MGP_C57BL6NJ_G0016580.1 mouse_genomes_project 1 79006537 79011089 - MGP_C57BL6NJ_P0021202 Chpf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021203.1 MGP_C57BL6NJ_G0016580.1 mouse_genomes_project 1 79009471 79011084 - MGP_C57BL6NJ_P0021203 Chpf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021036.1 MGP_C57BL6NJ_G0016558.1 mouse_genomes_project 1 78459808 78494010 - MGP_C57BL6NJ_P0021036 Ccdc108 protein_coding protein_coding MGP_C57BL6NJ_T0021037.1 MGP_C57BL6NJ_G0016558.1 mouse_genomes_project 1 78480731 78494005 - Ccdc108 protein_coding retained_intron MGP_C57BL6NJ_T0021038.1 MGP_C57BL6NJ_G0016558.1 mouse_genomes_project 1 78481820 78494003 - Ccdc108 protein_coding retained_intron MGP_C57BL6NJ_T0006215.1 MGP_C57BL6NJ_G0005199.1 mouse_genomes_project 1 204570158 204571540 + D730003I15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006216.1 MGP_C57BL6NJ_G0005199.1 mouse_genomes_project 1 204570178 204571845 + D730003I15Rik lincRNA lincRNA MGP_C57BL6NJ_T0019852.1 MGP_C57BL6NJ_G0016331.1 mouse_genomes_project 1 37833430 37846931 - MGP_C57BL6NJ_P0019852 2010300C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0019853.1 MGP_C57BL6NJ_G0016331.1 mouse_genomes_project 1 37833430 37945119 - MGP_C57BL6NJ_P0019853 2010300C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0019854.1 MGP_C57BL6NJ_G0016331.1 mouse_genomes_project 1 37862265 37944829 - MGP_C57BL6NJ_P0019854 2010300C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0022882.1 MGP_C57BL6NJ_G0016951.1 mouse_genomes_project 1 147521617 147601524 - MGP_C57BL6NJ_P0022882 Nek7 protein_coding protein_coding MGP_C57BL6NJ_T0022883.1 MGP_C57BL6NJ_G0016951.1 mouse_genomes_project 1 147552739 147662434 - Nek7 protein_coding retained_intron MGP_C57BL6NJ_T0012473.1 MGP_C57BL6NJ_G0010518.1 mouse_genomes_project 1 112738578 112738849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000746.1 MGP_C57BL6NJ_G0000662.1 mouse_genomes_project 1 136313844 136316579 + TEC TEC MGP_C57BL6NJ_T0019214.1 MGP_C57BL6NJ_G0016207.1 mouse_genomes_project 1 3132172 3135864 - MGP_C57BL6NJ_P0019214 Npbwr1 protein_coding protein_coding MGP_C57BL6NJ_T0099286.1 MGP_C57BL6NJ_G0037350.1 mouse_genomes_project 1 38331239 38332250 - Gm37062 sense_intronic sense_intronic MGP_C57BL6NJ_T0021583.1 MGP_C57BL6NJ_G0016660.1 mouse_genomes_project 1 92149775 92183513 - MGP_C57BL6NJ_P0021583 Ngef protein_coding protein_coding MGP_C57BL6NJ_T0021584.1 MGP_C57BL6NJ_G0016660.1 mouse_genomes_project 1 92149775 92243786 - MGP_C57BL6NJ_P0021584 Ngef protein_coding protein_coding MGP_C57BL6NJ_T0021585.1 MGP_C57BL6NJ_G0016660.1 mouse_genomes_project 1 92151626 92159117 - MGP_C57BL6NJ_P0021585 Ngef protein_coding protein_coding MGP_C57BL6NJ_T0021586.1 MGP_C57BL6NJ_G0016660.1 mouse_genomes_project 1 92152670 92159157 - Ngef protein_coding retained_intron MGP_C57BL6NJ_T0024712.1 MGP_C57BL6NJ_G0017349.1 mouse_genomes_project 1 205332066 205338544 + MGP_C57BL6NJ_P0024712 Slc30a1 protein_coding protein_coding MGP_C57BL6NJ_T0024713.1 MGP_C57BL6NJ_G0017349.1 mouse_genomes_project 1 205332555 205334473 + MGP_C57BL6NJ_P0024713 Slc30a1 protein_coding protein_coding MGP_C57BL6NJ_T0099288.1 MGP_C57BL6NJ_G0037352.1 mouse_genomes_project 1 53525328 53526607 - Gm29453 sense_intronic sense_intronic MGP_C57BL6NJ_T0024185.1 MGP_C57BL6NJ_G0017242.1 mouse_genomes_project 1 187800250 187847315 + Wdr64 protein_coding processed_transcript MGP_C57BL6NJ_T0024186.1 MGP_C57BL6NJ_G0017242.1 mouse_genomes_project 1 187800250 187929399 + MGP_C57BL6NJ_P0024186 Wdr64 protein_coding protein_coding MGP_C57BL6NJ_T0024187.1 MGP_C57BL6NJ_G0017242.1 mouse_genomes_project 1 187800250 187929399 + MGP_C57BL6NJ_P0024187 Wdr64 protein_coding protein_coding MGP_C57BL6NJ_T0024188.1 MGP_C57BL6NJ_G0017242.1 mouse_genomes_project 1 187800444 187929031 + MGP_C57BL6NJ_P0024188 Wdr64 protein_coding protein_coding MGP_C57BL6NJ_T0024189.1 MGP_C57BL6NJ_G0017242.1 mouse_genomes_project 1 187871502 187929396 + MGP_C57BL6NJ_P0024189 Wdr64 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000521.1 MGP_C57BL6NJ_G0000440.1 mouse_genomes_project 1 13905662 13908831 + TEC TEC MGP_C57BL6NJ_T0024243.1 MGP_C57BL6NJ_G0017251.1 mouse_genomes_project 1 189958023 189991514 - MGP_C57BL6NJ_P0024243 Adss protein_coding protein_coding MGP_C57BL6NJ_T0024244.1 MGP_C57BL6NJ_G0017251.1 mouse_genomes_project 1 189958237 189963663 - Adss protein_coding retained_intron MGP_C57BL6NJ_T0024245.1 MGP_C57BL6NJ_G0017251.1 mouse_genomes_project 1 189969678 189991504 - Adss protein_coding retained_intron MGP_C57BL6NJ_T0023153.1 MGP_C57BL6NJ_G0017004.1 mouse_genomes_project 1 164070238 164081013 + MGP_C57BL6NJ_P0023153 Rnasel protein_coding protein_coding MGP_C57BL6NJ_T0023154.1 MGP_C57BL6NJ_G0017004.1 mouse_genomes_project 1 164072597 164082473 + MGP_C57BL6NJ_P0023154 Rnasel protein_coding protein_coding MGP_C57BL6NJ_T0023155.1 MGP_C57BL6NJ_G0017004.1 mouse_genomes_project 1 164072607 164081081 + MGP_C57BL6NJ_P0023155 Rnasel protein_coding protein_coding MGP_C57BL6NJ_T0023156.1 MGP_C57BL6NJ_G0017004.1 mouse_genomes_project 1 164072623 164080997 + Rnasel protein_coding retained_intron MGP_C57BL6NJ_T0023157.1 MGP_C57BL6NJ_G0017004.1 mouse_genomes_project 1 164076536 164080997 + Rnasel protein_coding processed_transcript MGP_C57BL6NJ_T0000734.1 MGP_C57BL6NJ_G0000650.1 mouse_genomes_project 1 131627308 131630169 - TEC TEC MGP_C57BL6NJ_T0019184.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1944938 1989568 + MGP_C57BL6NJ_P0019184 Lypla1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019185.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1944973 1986099 + MGP_C57BL6NJ_P0019185 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019186.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1944980 1980646 + MGP_C57BL6NJ_P0019186 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019188.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1945046 1984534 + MGP_C57BL6NJ_P0019188 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019189.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1945048 1980329 + MGP_C57BL6NJ_P0019189 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019190.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1945061 1984712 + MGP_C57BL6NJ_P0019190 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019191.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1945091 1986100 + MGP_C57BL6NJ_P0019191 Lypla1 protein_coding protein_coding MGP_C57BL6NJ_T0019192.1 MGP_C57BL6NJ_G0016201.1 mouse_genomes_project 1 1976264 1982187 + Lypla1 protein_coding retained_intron MGP_C57BL6NJ_T0020461.1 MGP_C57BL6NJ_G0016450.1 mouse_genomes_project 1 61174039 61241634 - MGP_C57BL6NJ_P0020461 Trak2 protein_coding protein_coding MGP_C57BL6NJ_T0020462.1 MGP_C57BL6NJ_G0016450.1 mouse_genomes_project 1 61177263 61180766 - Trak2 protein_coding retained_intron MGP_C57BL6NJ_T0020463.1 MGP_C57BL6NJ_G0016450.1 mouse_genomes_project 1 61193440 61195242 - Trak2 protein_coding processed_transcript MGP_C57BL6NJ_T0020464.1 MGP_C57BL6NJ_G0016450.1 mouse_genomes_project 1 61199963 61241460 - MGP_C57BL6NJ_P0020464 Trak2 protein_coding protein_coding MGP_C57BL6NJ_T0020465.1 MGP_C57BL6NJ_G0016450.1 mouse_genomes_project 1 61213886 61241461 - Trak2 protein_coding retained_intron MGP_C57BL6NJ_T0102646.1 MGP_C57BL6NJ_G0040441.1 mouse_genomes_project 1 73137960 73138048 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019738.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36437475 36485182 - MGP_C57BL6NJ_P0019738 Kansl3 protein_coding protein_coding MGP_C57BL6NJ_T0019739.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36437475 36485158 - MGP_C57BL6NJ_P0019739 Kansl3 protein_coding protein_coding MGP_C57BL6NJ_T0019740.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36439318 36485172 - MGP_C57BL6NJ_P0019740 Kansl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019741.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36439318 36484015 - MGP_C57BL6NJ_P0019741 Kansl3 protein_coding protein_coding MGP_C57BL6NJ_T0019742.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36466353 36484042 - MGP_C57BL6NJ_P0019742 Kansl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019743.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36474135 36485156 - MGP_C57BL6NJ_P0019743 Kansl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019744.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36481628 36484042 - MGP_C57BL6NJ_P0019744 Kansl3 protein_coding protein_coding MGP_C57BL6NJ_T0019745.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36481911 36485158 - Kansl3 protein_coding retained_intron MGP_C57BL6NJ_T0019746.1 MGP_C57BL6NJ_G0016312.1 mouse_genomes_project 1 36483966 36485103 - MGP_C57BL6NJ_P0019746 Kansl3 protein_coding protein_coding MGP_C57BL6NJ_T0020685.1 MGP_C57BL6NJ_G0016487.1 mouse_genomes_project 1 67290815 67302921 - MGP_C57BL6NJ_P0020685 Mettl21a protein_coding protein_coding MGP_C57BL6NJ_T0020686.1 MGP_C57BL6NJ_G0016487.1 mouse_genomes_project 1 67290822 67302847 - MGP_C57BL6NJ_P0020686 Mettl21a protein_coding protein_coding MGP_C57BL6NJ_T0020687.1 MGP_C57BL6NJ_G0016487.1 mouse_genomes_project 1 67292298 67301310 - Mettl21a protein_coding processed_transcript MGP_C57BL6NJ_T0020688.1 MGP_C57BL6NJ_G0016487.1 mouse_genomes_project 1 67298546 67302863 - Mettl21a protein_coding processed_transcript MGP_C57BL6NJ_T0012585.1 MGP_C57BL6NJ_G0010630.1 mouse_genomes_project 1 162317502 162318307 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099642.1 MGP_C57BL6NJ_G0037688.1 mouse_genomes_project 1 174460859 174460967 + Gm24940 snRNA snRNA MGP_C57BL6NJ_T0023053.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555651 161571989 + Trmt1l protein_coding retained_intron MGP_C57BL6NJ_T0023054.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555651 161591958 + MGP_C57BL6NJ_P0023054 Trmt1l protein_coding protein_coding MGP_C57BL6NJ_T0023055.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555746 161563793 + Trmt1l protein_coding retained_intron MGP_C57BL6NJ_T0023056.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555751 161579263 + Trmt1l protein_coding retained_intron MGP_C57BL6NJ_T0023057.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555757 161557746 + Trmt1l protein_coding retained_intron MGP_C57BL6NJ_T0023058.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555776 161563793 + Trmt1l protein_coding retained_intron MGP_C57BL6NJ_T0023059.1 MGP_C57BL6NJ_G0016984.1 mouse_genomes_project 1 161555815 161591958 + MGP_C57BL6NJ_P0023059 Trmt1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100909.1 MGP_C57BL6NJ_G0038955.1 mouse_genomes_project 1 143209047 143209173 + Gm25612 snoRNA snoRNA MGP_C57BL6NJ_T0100935.1 MGP_C57BL6NJ_G0038981.1 mouse_genomes_project 1 182984201 182984292 + Gm25151 snoRNA snoRNA MGP_C57BL6NJ_T0012375.1 MGP_C57BL6NJ_G0010420.1 mouse_genomes_project 1 72143813 72144199 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021326.1 MGP_C57BL6NJ_G0016605.1 mouse_genomes_project 1 86344316 86347138 + MGP_C57BL6NJ_P0021326 Gm9747 protein_coding protein_coding MGP_C57BL6NJ_T0020108.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46750362 46779948 + MGP_C57BL6NJ_P0020108 Wdr75 protein_coding protein_coding MGP_C57BL6NJ_T0020109.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46750645 46779933 + Wdr75 protein_coding retained_intron MGP_C57BL6NJ_T0020110.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46750699 46757674 + Wdr75 protein_coding retained_intron MGP_C57BL6NJ_T0020111.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46750703 46759248 + MGP_C57BL6NJ_P0020111 Wdr75 protein_coding protein_coding MGP_C57BL6NJ_T0020112.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46757307 46779844 + Wdr75 protein_coding processed_transcript MGP_C57BL6NJ_T0020113.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46759004 46760766 + Wdr75 protein_coding processed_transcript MGP_C57BL6NJ_T0020114.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46770967 46779948 + Wdr75 protein_coding retained_intron MGP_C57BL6NJ_T0020115.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46778593 46779842 + Wdr75 protein_coding retained_intron MGP_C57BL6NJ_T0020116.1 MGP_C57BL6NJ_G0016385.1 mouse_genomes_project 1 46778886 46779945 + MGP_C57BL6NJ_P0020116 Wdr75 protein_coding protein_coding MGP_C57BL6NJ_T0024766.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206622134 206631921 + MGP_C57BL6NJ_P0024766 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024768.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627556 206630387 + MGP_C57BL6NJ_P0024768 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024769.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627580 206628920 + MGP_C57BL6NJ_P0024769 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024770.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627665 206631921 + MGP_C57BL6NJ_P0024770 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024771.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627668 206630389 + MGP_C57BL6NJ_P0024771 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024772.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627668 206628515 + MGP_C57BL6NJ_P0024772 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024773.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627674 206628641 + MGP_C57BL6NJ_P0024773 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0024774.1 MGP_C57BL6NJ_G0017359.1 mouse_genomes_project 1 206627832 206628684 + MGP_C57BL6NJ_P0024774 A130010J15Rik protein_coding protein_coding MGP_C57BL6NJ_T0006127.1 MGP_C57BL6NJ_G0005130.1 mouse_genomes_project 1 174351619 174353450 - Gm26523 lincRNA lincRNA MGP_C57BL6NJ_T0002941.1 MGP_C57BL6NJ_G0002780.1 mouse_genomes_project 1 41245564 41262422 + Gm37915 antisense antisense MGP_C57BL6NJ_T0003095.1 MGP_C57BL6NJ_G0002896.1 mouse_genomes_project 1 182578263 182582637 + Gm38204 antisense antisense MGP_C57BL6NJ_T0012271.1 MGP_C57BL6NJ_G0010316.1 mouse_genomes_project 1 44535817 44537096 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099581.1 MGP_C57BL6NJ_G0037627.1 mouse_genomes_project 1 32312405 32312468 - Gm24732 snRNA snRNA MGP_C57BL6NJ_T0099236.1 MGP_C57BL6NJ_G0037300.1 mouse_genomes_project 1 92464256 92464521 + Scarna6 scaRNA scaRNA MGP_C57BL6NJ_T0000873.1 MGP_C57BL6NJ_G0000787.1 mouse_genomes_project 1 184310906 184312465 + TEC TEC MGP_C57BL6NJ_T0012564.1 MGP_C57BL6NJ_G0010609.1 mouse_genomes_project 1 153687476 153687881 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021822.1 MGP_C57BL6NJ_G0016717.1 mouse_genomes_project 1 97786859 97787857 + MGP_C57BL6NJ_P0021822 Olfr1411 protein_coding protein_coding MGP_C57BL6NJ_T0020881.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77387822 77609732 - MGP_C57BL6NJ_P0020881 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020882.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77387823 77609734 - MGP_C57BL6NJ_P0020882 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020883.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77387823 77575186 - MGP_C57BL6NJ_P0020883 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020884.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77391502 77406105 - MGP_C57BL6NJ_P0020884 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020885.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77391684 77476282 - MGP_C57BL6NJ_P0020885 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020886.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77391708 77476282 - MGP_C57BL6NJ_P0020886 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020887.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77392121 77609732 - MGP_C57BL6NJ_P0020887 Tns1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0020888.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77402721 77418605 - MGP_C57BL6NJ_P0020888 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020889.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77403008 77405809 - Tns1 protein_coding retained_intron MGP_C57BL6NJ_T0020890.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77403008 77408403 - Tns1 protein_coding processed_transcript MGP_C57BL6NJ_T0020891.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77403221 77408097 - Tns1 protein_coding processed_transcript MGP_C57BL6NJ_T0020892.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77430962 77441686 - MGP_C57BL6NJ_P0020892 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020893.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77460681 77467035 - Tns1 protein_coding retained_intron MGP_C57BL6NJ_T0020894.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77470671 77479371 - Tns1 protein_coding retained_intron MGP_C57BL6NJ_T0020895.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77471323 77500273 - Tns1 protein_coding processed_transcript MGP_C57BL6NJ_T0020896.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77473049 77479371 - Tns1 protein_coding processed_transcript MGP_C57BL6NJ_T0020897.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77473154 77484481 - MGP_C57BL6NJ_P0020897 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020898.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77474112 77521001 - MGP_C57BL6NJ_P0020898 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020899.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77475712 77478605 - Tns1 protein_coding retained_intron MGP_C57BL6NJ_T0020900.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77476197 77580659 - MGP_C57BL6NJ_P0020900 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020901.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77477964 77580702 - MGP_C57BL6NJ_P0020901 Tns1 protein_coding protein_coding MGP_C57BL6NJ_T0020902.1 MGP_C57BL6NJ_G0016530.1 mouse_genomes_project 1 77485224 77521025 - Tns1 protein_coding processed_transcript MGP_C57BL6NJ_T0012594.1 MGP_C57BL6NJ_G0010639.1 mouse_genomes_project 1 166323234 166323540 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024368.1 MGP_C57BL6NJ_G0017274.1 mouse_genomes_project 1 193292962 193298088 - protein_coding retained_intron MGP_C57BL6NJ_T0023236.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166491208 166529672 - MGP_C57BL6NJ_P0023236 Tor1aip1 protein_coding protein_coding MGP_C57BL6NJ_T0023237.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166491223 166531283 - MGP_C57BL6NJ_P0023237 Tor1aip1 protein_coding protein_coding MGP_C57BL6NJ_T0023238.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166494838 166531336 - MGP_C57BL6NJ_P0023238 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023239.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166500138 166531336 - MGP_C57BL6NJ_P0023239 Tor1aip1 protein_coding protein_coding MGP_C57BL6NJ_T0023240.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166500888 166527809 - MGP_C57BL6NJ_P0023240 Tor1aip1 protein_coding protein_coding MGP_C57BL6NJ_T0023241.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166500929 166529735 - MGP_C57BL6NJ_P0023241 Tor1aip1 protein_coding protein_coding MGP_C57BL6NJ_T0023242.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166500929 166531336 - MGP_C57BL6NJ_P0023242 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023243.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166511393 166512750 - Tor1aip1 protein_coding retained_intron MGP_C57BL6NJ_T0023244.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166516413 166530906 - MGP_C57BL6NJ_P0023244 Tor1aip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023245.1 MGP_C57BL6NJ_G0017021.1 mouse_genomes_project 1 166524200 166531003 - Tor1aip1 protein_coding retained_intron MGP_C57BL6NJ_T0009716.1 MGP_C57BL6NJ_G0007801.1 mouse_genomes_project 1 112856263 112856399 - Mir3473f miRNA miRNA MGP_C57BL6NJ_T0005886.1 MGP_C57BL6NJ_G0004941.1 mouse_genomes_project 1 53118222 53119222 - 1700072G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006164.1 MGP_C57BL6NJ_G0005162.1 mouse_genomes_project 1 192961253 192973281 - Gm37267 lincRNA lincRNA MGP_C57BL6NJ_T0006010.1 MGP_C57BL6NJ_G0005039.1 mouse_genomes_project 1 102244490 102307010 - 4930533P14Rik lincRNA lincRNA MGP_C57BL6NJ_T0023907.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183011931 183027968 + MGP_C57BL6NJ_P0023907 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023908.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183012185 183027962 + MGP_C57BL6NJ_P0023908 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023909.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183012194 183027319 + MGP_C57BL6NJ_P0023909 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023910.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183012355 183025932 + MGP_C57BL6NJ_P0023910 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023911.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183012396 183026586 + MGP_C57BL6NJ_P0023911 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023912.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183012851 183024047 + MGP_C57BL6NJ_P0023912 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023913.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183013120 183023976 + MGP_C57BL6NJ_P0023913 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023914.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183014191 183027253 + MGP_C57BL6NJ_P0023914 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0023915.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183022427 183025769 + Dedd protein_coding retained_intron MGP_C57BL6NJ_T0023916.1 MGP_C57BL6NJ_G0017157.1 mouse_genomes_project 1 183023603 183025862 + MGP_C57BL6NJ_P0023916 Dedd protein_coding protein_coding MGP_C57BL6NJ_T0102676.1 MGP_C57BL6NJ_G0040471.1 mouse_genomes_project 1 124965282 124968001 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019215.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3450432 3478914 + MGP_C57BL6NJ_P0019215 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019216.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3450462 3482980 + MGP_C57BL6NJ_P0019216 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019217.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3458869 3475111 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019218.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3459055 3530062 + MGP_C57BL6NJ_P0019218 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019219.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3459214 3478613 + MGP_C57BL6NJ_P0019219 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019220.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3472408 3493630 + MGP_C57BL6NJ_P0019220 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019221.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3485565 3492959 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019222.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3493688 3530277 + MGP_C57BL6NJ_P0019222 Rb1cc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019223.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3494577 3495859 + Rb1cc1 protein_coding processed_transcript MGP_C57BL6NJ_T0019224.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3494695 3522133 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019225.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3510046 3518968 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019226.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3519016 3521007 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019227.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3519046 3530276 + MGP_C57BL6NJ_P0019227 Rb1cc1 protein_coding protein_coding MGP_C57BL6NJ_T0019228.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3521928 3529088 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0019229.1 MGP_C57BL6NJ_G0016208.1 mouse_genomes_project 1 3527000 3531362 + Rb1cc1 protein_coding retained_intron MGP_C57BL6NJ_T0000615.1 MGP_C57BL6NJ_G0000531.1 mouse_genomes_project 1 62771449 62772506 + TEC TEC MGP_C57BL6NJ_T0019789.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36834942 36846837 - MGP_C57BL6NJ_P0019789 Actr1b protein_coding protein_coding MGP_C57BL6NJ_T0019790.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36838041 36838480 - Actr1b protein_coding retained_intron MGP_C57BL6NJ_T0019791.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36838500 36846776 - Actr1b protein_coding retained_intron MGP_C57BL6NJ_T0019792.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36838591 36846507 - MGP_C57BL6NJ_P0019792 Actr1b protein_coding protein_coding MGP_C57BL6NJ_T0019793.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36838612 36853047 - MGP_C57BL6NJ_P0019793 Actr1b protein_coding protein_coding MGP_C57BL6NJ_T0019794.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36839310 36843996 - Actr1b protein_coding retained_intron MGP_C57BL6NJ_T0019795.1 MGP_C57BL6NJ_G0016322.1 mouse_genomes_project 1 36843376 36846748 - Actr1b protein_coding processed_transcript MGP_C57BL6NJ_T0100886.1 MGP_C57BL6NJ_G0038932.1 mouse_genomes_project 1 90945976 90946109 - Snora75 snoRNA snoRNA MGP_C57BL6NJ_T0024750.1 MGP_C57BL6NJ_G0017356.1 mouse_genomes_project 1 206330825 206480672 - MGP_C57BL6NJ_P0024750 Syt14 protein_coding protein_coding MGP_C57BL6NJ_T0024751.1 MGP_C57BL6NJ_G0017356.1 mouse_genomes_project 1 206335578 206480559 - MGP_C57BL6NJ_P0024751 Syt14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024752.1 MGP_C57BL6NJ_G0017356.1 mouse_genomes_project 1 206336802 206480614 - MGP_C57BL6NJ_P0024752 Syt14 protein_coding protein_coding MGP_C57BL6NJ_T0024753.1 MGP_C57BL6NJ_G0017356.1 mouse_genomes_project 1 206370745 206480541 - Syt14 protein_coding retained_intron MGP_C57BL6NJ_T0020771.1 MGP_C57BL6NJ_G0016505.1 mouse_genomes_project 1 69547282 69560437 + MGP_C57BL6NJ_P0020771 Rpe protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020772.1 MGP_C57BL6NJ_G0016505.1 mouse_genomes_project 1 69547282 69565032 + MGP_C57BL6NJ_P0020772 Rpe protein_coding protein_coding MGP_C57BL6NJ_T0020773.1 MGP_C57BL6NJ_G0016505.1 mouse_genomes_project 1 69547282 69565032 + MGP_C57BL6NJ_P0020773 Rpe protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020774.1 MGP_C57BL6NJ_G0016505.1 mouse_genomes_project 1 69547282 69565032 + MGP_C57BL6NJ_P0020774 Rpe protein_coding protein_coding MGP_C57BL6NJ_T0020775.1 MGP_C57BL6NJ_G0016505.1 mouse_genomes_project 1 69547358 69563246 + MGP_C57BL6NJ_P0020775 Rpe protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000505.1 MGP_C57BL6NJ_G0000424.1 mouse_genomes_project 1 9047207 9050246 - TEC TEC MGP_C57BL6NJ_T0012129.1 MGP_C57BL6NJ_G0010174.1 mouse_genomes_project 1 1723299 1724235 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000563.1 MGP_C57BL6NJ_G0000480.1 mouse_genomes_project 1 33449794 33452910 - TEC TEC MGP_C57BL6NJ_T0024460.1 MGP_C57BL6NJ_G0017296.1 mouse_genomes_project 1 195301202 195349151 + Capn8 protein_coding processed_transcript MGP_C57BL6NJ_T0024461.1 MGP_C57BL6NJ_G0017296.1 mouse_genomes_project 1 195301207 195376383 + MGP_C57BL6NJ_P0024461 Capn8 protein_coding protein_coding MGP_C57BL6NJ_T0024462.1 MGP_C57BL6NJ_G0017296.1 mouse_genomes_project 1 195301233 195376271 + MGP_C57BL6NJ_P0024462 Capn8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000598.1 MGP_C57BL6NJ_G0000514.1 mouse_genomes_project 1 53189396 53191761 - TEC TEC MGP_C57BL6NJ_T0003055.1 MGP_C57BL6NJ_G0002866.1 mouse_genomes_project 1 160660843 160720223 + antisense antisense MGP_C57BL6NJ_T0003056.1 MGP_C57BL6NJ_G0002866.1 mouse_genomes_project 1 160660876 160842019 + antisense antisense MGP_C57BL6NJ_T0006014.1 MGP_C57BL6NJ_G0005042.1 mouse_genomes_project 1 104346561 104370031 + Gm7967 lincRNA lincRNA MGP_C57BL6NJ_T0006015.1 MGP_C57BL6NJ_G0005042.1 mouse_genomes_project 1 104346562 104369791 + Gm7967 lincRNA lincRNA MGP_C57BL6NJ_T0017545.1 MGP_C57BL6NJ_G0015515.1 mouse_genomes_project 1 177034326 177042619 + Gm16565 processed_transcript sense_overlapping MGP_C57BL6NJ_T0017546.1 MGP_C57BL6NJ_G0015515.1 mouse_genomes_project 1 177034450 177035419 + Gm16565 processed_transcript processed_transcript MGP_C57BL6NJ_T0012488.1 MGP_C57BL6NJ_G0010533.1 mouse_genomes_project 1 118079147 118079928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020821.1 MGP_C57BL6NJ_G0016514.1 mouse_genomes_project 1 73859412 74036426 + MGP_C57BL6NJ_P0020821 Vwc2l protein_coding protein_coding MGP_C57BL6NJ_T0020822.1 MGP_C57BL6NJ_G0016514.1 mouse_genomes_project 1 73859449 73865900 + Vwc2l protein_coding retained_intron MGP_C57BL6NJ_T0020823.1 MGP_C57BL6NJ_G0016514.1 mouse_genomes_project 1 73859599 74036411 + MGP_C57BL6NJ_P0020823 Vwc2l protein_coding protein_coding MGP_C57BL6NJ_T0020824.1 MGP_C57BL6NJ_G0016514.1 mouse_genomes_project 1 73859620 74033518 + MGP_C57BL6NJ_P0020824 Vwc2l protein_coding protein_coding MGP_C57BL6NJ_T0022183.1 MGP_C57BL6NJ_G0016800.1 mouse_genomes_project 1 126965558 126968382 + MGP_C57BL6NJ_P0022183 Tmem185b protein_coding protein_coding MGP_C57BL6NJ_T0022184.1 MGP_C57BL6NJ_G0016800.1 mouse_genomes_project 1 126965571 126966628 + Tmem185b protein_coding processed_transcript MGP_C57BL6NJ_T0012511.1 MGP_C57BL6NJ_G0010556.1 mouse_genomes_project 1 126938523 126938916 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003140.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205311429 205326186 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0003141.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205315530 205324429 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0003142.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205315532 205324556 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0003143.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205315721 205327021 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0003144.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205319371 205332819 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0003145.1 MGP_C57BL6NJ_G0002933.1 mouse_genomes_project 1 205325269 205332827 - 1700034H15Rik antisense antisense MGP_C57BL6NJ_T0024568.1 MGP_C57BL6NJ_G0017321.1 mouse_genomes_project 1 199955876 199959088 + MGP_C57BL6NJ_P0024568 D1Pas1 protein_coding protein_coding MGP_C57BL6NJ_T0006081.1 MGP_C57BL6NJ_G0005095.1 mouse_genomes_project 1 145558017 145593351 + Platr22 lincRNA lincRNA MGP_C57BL6NJ_T0006200.1 MGP_C57BL6NJ_G0005186.1 mouse_genomes_project 1 198318244 198326696 - Gm2061 lincRNA lincRNA MGP_C57BL6NJ_T0020445.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972614 60975005 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020446.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972614 61013435 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020447.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972616 60992570 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020448.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972622 60975422 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020449.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972640 60975008 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020450.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972650 60978656 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020451.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972657 61013070 + MGP_C57BL6NJ_P0020451 Cflar protein_coding protein_coding MGP_C57BL6NJ_T0020452.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60972666 61017995 + MGP_C57BL6NJ_P0020452 Cflar protein_coding protein_coding MGP_C57BL6NJ_T0020453.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60974412 60994551 + MGP_C57BL6NJ_P0020453 Cflar protein_coding protein_coding MGP_C57BL6NJ_T0020454.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60974420 60984172 + Cflar protein_coding processed_transcript MGP_C57BL6NJ_T0020455.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60974435 61014259 + MGP_C57BL6NJ_P0020455 Cflar protein_coding protein_coding MGP_C57BL6NJ_T0020456.1 MGP_C57BL6NJ_G0016448.1 mouse_genomes_project 1 60975004 60978664 + Cflar protein_coding retained_intron MGP_C57BL6NJ_T0002968.1 MGP_C57BL6NJ_G0002801.1 mouse_genomes_project 1 66733397 66745524 + Gm13748 antisense antisense MGP_C57BL6NJ_T0022415.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139580830 + Eif2d protein_coding retained_intron MGP_C57BL6NJ_T0022416.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139595655 + MGP_C57BL6NJ_P0022416 Eif2d protein_coding protein_coding MGP_C57BL6NJ_T0022417.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139601789 + MGP_C57BL6NJ_P0022417 Eif2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022418.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139594416 + MGP_C57BL6NJ_P0022418 Eif2d protein_coding protein_coding MGP_C57BL6NJ_T0022419.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139602203 + MGP_C57BL6NJ_P0022419 Eif2d protein_coding protein_coding MGP_C57BL6NJ_T0022420.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139597029 + MGP_C57BL6NJ_P0022420 Eif2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022421.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139574504 139609455 + MGP_C57BL6NJ_P0022421 Eif2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022422.1 MGP_C57BL6NJ_G0016854.1 mouse_genomes_project 1 139588555 139593687 + Eif2d protein_coding processed_transcript MGP_C57BL6NJ_T0024673.1 MGP_C57BL6NJ_G0017339.1 mouse_genomes_project 1 204431959 204443992 + Batf3 protein_coding processed_transcript MGP_C57BL6NJ_T0024674.1 MGP_C57BL6NJ_G0017339.1 mouse_genomes_project 1 204431992 204444451 + Batf3 protein_coding processed_transcript MGP_C57BL6NJ_T0024675.1 MGP_C57BL6NJ_G0017339.1 mouse_genomes_project 1 204432415 204444449 + MGP_C57BL6NJ_P0024675 Batf3 protein_coding protein_coding MGP_C57BL6NJ_T0024676.1 MGP_C57BL6NJ_G0017339.1 mouse_genomes_project 1 204432438 204443992 + Batf3 protein_coding processed_transcript MGP_C57BL6NJ_T0024677.1 MGP_C57BL6NJ_G0017339.1 mouse_genomes_project 1 204434502 204444415 + Batf3 protein_coding retained_intron MGP_C57BL6NJ_T0099544.1 MGP_C57BL6NJ_G0037594.1 mouse_genomes_project 1 202382903 202383556 - 2900042K21Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0000650.1 MGP_C57BL6NJ_G0000566.1 mouse_genomes_project 1 78026933 78029895 - TEC TEC MGP_C57BL6NJ_T0021783.1 MGP_C57BL6NJ_G0016707.1 mouse_genomes_project 1 96593990 96628655 + MGP_C57BL6NJ_P0021783 Traf3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0021784.1 MGP_C57BL6NJ_G0016707.1 mouse_genomes_project 1 96594037 96630006 + MGP_C57BL6NJ_P0021784 Traf3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0021785.1 MGP_C57BL6NJ_G0016707.1 mouse_genomes_project 1 96619168 96630006 + Traf3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0012359.1 MGP_C57BL6NJ_G0010404.1 mouse_genomes_project 1 66809642 66810107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012554.1 MGP_C57BL6NJ_G0010599.1 mouse_genomes_project 1 147970204 147970643 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022513.1 MGP_C57BL6NJ_G0016874.1 mouse_genomes_project 1 140834185 140852728 + MGP_C57BL6NJ_P0022513 Nuak2 protein_coding protein_coding MGP_C57BL6NJ_T0022514.1 MGP_C57BL6NJ_G0016874.1 mouse_genomes_project 1 140834185 140852923 + MGP_C57BL6NJ_P0022514 Nuak2 protein_coding protein_coding MGP_C57BL6NJ_T0022515.1 MGP_C57BL6NJ_G0016874.1 mouse_genomes_project 1 140834224 140835796 + Nuak2 protein_coding processed_transcript MGP_C57BL6NJ_T0022516.1 MGP_C57BL6NJ_G0016874.1 mouse_genomes_project 1 140845687 140849885 + Nuak2 protein_coding retained_intron MGP_C57BL6NJ_T0012546.1 MGP_C57BL6NJ_G0010591.1 mouse_genomes_project 1 145368577 145368859 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020509.1 MGP_C57BL6NJ_G0016459.1 mouse_genomes_project 1 61908522 62000452 - Sumo1 protein_coding processed_transcript MGP_C57BL6NJ_T0020514.1 MGP_C57BL6NJ_G0016459.1 mouse_genomes_project 1 61963663 62000494 - MGP_C57BL6NJ_P0020514 Sumo1 protein_coding protein_coding MGP_C57BL6NJ_T0020515.1 MGP_C57BL6NJ_G0016459.1 mouse_genomes_project 1 61964168 62000399 - MGP_C57BL6NJ_P0020515 Sumo1 protein_coding protein_coding MGP_C57BL6NJ_T0020516.1 MGP_C57BL6NJ_G0016459.1 mouse_genomes_project 1 61970272 62000494 - Sumo1 protein_coding retained_intron MGP_C57BL6NJ_T0000741.1 MGP_C57BL6NJ_G0000657.1 mouse_genomes_project 1 135377255 135382011 + TEC TEC MGP_C57BL6NJ_T0022862.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145743094 145872907 - MGP_C57BL6NJ_P0022862 Nr5a2 protein_coding protein_coding MGP_C57BL6NJ_T0022863.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145744799 145859400 - MGP_C57BL6NJ_P0022863 Nr5a2 protein_coding protein_coding MGP_C57BL6NJ_T0022864.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145745837 145872839 - MGP_C57BL6NJ_P0022864 Nr5a2 protein_coding protein_coding MGP_C57BL6NJ_T0022865.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145745986 145863935 - MGP_C57BL6NJ_P0022865 Nr5a2 protein_coding protein_coding MGP_C57BL6NJ_T0022866.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145791507 145850424 - Nr5a2 protein_coding retained_intron MGP_C57BL6NJ_T0022867.1 MGP_C57BL6NJ_G0016948.1 mouse_genomes_project 1 145850825 145859011 - MGP_C57BL6NJ_P0022867 Nr5a2 protein_coding protein_coding MGP_C57BL6NJ_T0006011.1 MGP_C57BL6NJ_G0005040.1 mouse_genomes_project 1 103860719 103867361 + 1810006J02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006012.1 MGP_C57BL6NJ_G0005040.1 mouse_genomes_project 1 103860730 103873826 + 1810006J02Rik lincRNA lincRNA MGP_C57BL6NJ_T0021044.1 MGP_C57BL6NJ_G0016561.1 mouse_genomes_project 1 78638331 78646681 - MGP_C57BL6NJ_P0021044 Slc23a3 protein_coding protein_coding MGP_C57BL6NJ_T0021045.1 MGP_C57BL6NJ_G0016561.1 mouse_genomes_project 1 78644503 78646337 - Slc23a3 protein_coding retained_intron MGP_C57BL6NJ_T0019248.1 MGP_C57BL6NJ_G0016212.1 mouse_genomes_project 1 4542845 4544950 + MGP_C57BL6NJ_P0019248 protein_coding protein_coding MGP_C57BL6NJ_T0000627.1 MGP_C57BL6NJ_G0000543.1 mouse_genomes_project 1 65836359 65836838 - TEC TEC MGP_C57BL6NJ_T0002950.1 MGP_C57BL6NJ_G0002788.1 mouse_genomes_project 1 56626098 56685148 + 4930444A19Rik antisense antisense MGP_C57BL6NJ_T0002951.1 MGP_C57BL6NJ_G0002788.1 mouse_genomes_project 1 56639490 56716135 + 4930444A19Rik antisense antisense MGP_C57BL6NJ_T0024479.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196018134 196040687 - MGP_C57BL6NJ_P0024479 Brox protein_coding protein_coding MGP_C57BL6NJ_T0024480.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196018238 196040951 - MGP_C57BL6NJ_P0024480 Brox protein_coding protein_coding MGP_C57BL6NJ_T0024481.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196018945 196040964 - MGP_C57BL6NJ_P0024481 Brox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024482.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196027486 196029900 - Brox protein_coding retained_intron MGP_C57BL6NJ_T0024483.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196029843 196036423 - Brox protein_coding retained_intron MGP_C57BL6NJ_T0024484.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196029898 196040923 - MGP_C57BL6NJ_P0024484 Brox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024485.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196031458 196035990 - Brox protein_coding retained_intron MGP_C57BL6NJ_T0024486.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196034560 196040951 - Brox protein_coding processed_transcript MGP_C57BL6NJ_T0024487.1 MGP_C57BL6NJ_G0017301.1 mouse_genomes_project 1 196035654 196039570 - MGP_C57BL6NJ_P0024487 Brox protein_coding protein_coding MGP_C57BL6NJ_T0021941.1 MGP_C57BL6NJ_G0016742.1 mouse_genomes_project 1 98945133 98956397 + MGP_C57BL6NJ_P0021941 Bok protein_coding protein_coding MGP_C57BL6NJ_T0021942.1 MGP_C57BL6NJ_G0016742.1 mouse_genomes_project 1 98945175 98955843 + MGP_C57BL6NJ_P0021942 Bok protein_coding protein_coding MGP_C57BL6NJ_T0021943.1 MGP_C57BL6NJ_G0016742.1 mouse_genomes_project 1 98945736 98953544 + MGP_C57BL6NJ_P0021943 Bok protein_coding protein_coding MGP_C57BL6NJ_T0021944.1 MGP_C57BL6NJ_G0016742.1 mouse_genomes_project 1 98948681 98956102 + MGP_C57BL6NJ_P0021944 Bok protein_coding protein_coding MGP_C57BL6NJ_T0021945.1 MGP_C57BL6NJ_G0016742.1 mouse_genomes_project 1 98953290 98956088 + Bok protein_coding processed_transcript MGP_C57BL6NJ_T0012588.1 MGP_C57BL6NJ_G0010633.1 mouse_genomes_project 1 163572124 163573171 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005994.1 MGP_C57BL6NJ_G0005024.1 mouse_genomes_project 1 95731431 95736064 + Gm9991 lincRNA lincRNA MGP_C57BL6NJ_T0012601.1 MGP_C57BL6NJ_G0010646.1 mouse_genomes_project 1 168231874 168232047 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099603.1 MGP_C57BL6NJ_G0037649.1 mouse_genomes_project 1 75546206 75546397 + Gm24497 snRNA snRNA MGP_C57BL6NJ_T0022554.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141517983 141604852 - MGP_C57BL6NJ_P0022554 Mdm4 protein_coding protein_coding MGP_C57BL6NJ_T0022555.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141520152 141531202 - Mdm4 protein_coding processed_transcript MGP_C57BL6NJ_T0022556.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141560829 141604930 - MGP_C57BL6NJ_P0022556 Mdm4 protein_coding protein_coding MGP_C57BL6NJ_T0022557.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141563670 141604862 - MGP_C57BL6NJ_P0022557 Mdm4 protein_coding protein_coding MGP_C57BL6NJ_T0022558.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141563945 141604871 - MGP_C57BL6NJ_P0022558 Mdm4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022559.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141564770 141604868 - MGP_C57BL6NJ_P0022559 Mdm4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022560.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141564897 141604870 - MGP_C57BL6NJ_P0022560 Mdm4 protein_coding protein_coding MGP_C57BL6NJ_T0022561.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141570184 141595721 - Mdm4 protein_coding processed_transcript MGP_C57BL6NJ_T0022562.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141570187 141577797 - Mdm4 protein_coding retained_intron MGP_C57BL6NJ_T0022563.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141573011 141574961 - Mdm4 protein_coding retained_intron MGP_C57BL6NJ_T0022564.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141574709 141577600 - Mdm4 protein_coding retained_intron MGP_C57BL6NJ_T0022565.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141582583 141604844 - Mdm4 protein_coding retained_intron MGP_C57BL6NJ_T0022566.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141582637 141615698 - MGP_C57BL6NJ_P0022566 Mdm4 protein_coding protein_coding MGP_C57BL6NJ_T0022567.1 MGP_C57BL6NJ_G0016882.1 mouse_genomes_project 1 141594563 141604852 - Mdm4 protein_coding retained_intron MGP_C57BL6NJ_T0019867.1 MGP_C57BL6NJ_G0016334.1 mouse_genomes_project 1 38108675 38124275 - MGP_C57BL6NJ_P0019867 Mitd1 protein_coding protein_coding MGP_C57BL6NJ_T0019868.1 MGP_C57BL6NJ_G0016334.1 mouse_genomes_project 1 38112762 38124279 - MGP_C57BL6NJ_P0019868 Mitd1 protein_coding protein_coding MGP_C57BL6NJ_T0019869.1 MGP_C57BL6NJ_G0016334.1 mouse_genomes_project 1 38112764 38113993 - Mitd1 protein_coding processed_transcript MGP_C57BL6NJ_T0019870.1 MGP_C57BL6NJ_G0016334.1 mouse_genomes_project 1 38112862 38115743 - Mitd1 protein_coding processed_transcript MGP_C57BL6NJ_T0019871.1 MGP_C57BL6NJ_G0016334.1 mouse_genomes_project 1 38115803 38124144 - Mitd1 protein_coding retained_intron MGP_C57BL6NJ_T0020037.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44495408 44581638 - MGP_C57BL6NJ_P0020037 Uxs1 protein_coding protein_coding MGP_C57BL6NJ_T0020038.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44497954 44581579 - MGP_C57BL6NJ_P0020038 Uxs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020039.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44516134 44581638 - MGP_C57BL6NJ_P0020039 Uxs1 protein_coding protein_coding MGP_C57BL6NJ_T0020040.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44522857 44580854 - Uxs1 protein_coding processed_transcript MGP_C57BL6NJ_T0020041.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44522857 44581588 - MGP_C57BL6NJ_P0020041 Uxs1 protein_coding protein_coding MGP_C57BL6NJ_T0020042.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44525993 44581600 - Uxs1 protein_coding processed_transcript MGP_C57BL6NJ_T0020043.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44530025 44581600 - MGP_C57BL6NJ_P0020043 Uxs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020044.1 MGP_C57BL6NJ_G0016373.1 mouse_genomes_project 1 44542186 44581612 - MGP_C57BL6NJ_P0020044 Uxs1 protein_coding protein_coding MGP_C57BL6NJ_T0000586.1 MGP_C57BL6NJ_G0000502.1 mouse_genomes_project 1 40423456 40424786 - TEC TEC MGP_C57BL6NJ_T0021933.1 MGP_C57BL6NJ_G0016740.1 mouse_genomes_project 1 98756599 98877789 + MGP_C57BL6NJ_P0021933 Farp2 protein_coding protein_coding MGP_C57BL6NJ_T0021934.1 MGP_C57BL6NJ_G0016740.1 mouse_genomes_project 1 98756632 98834924 + MGP_C57BL6NJ_P0021934 Farp2 protein_coding protein_coding MGP_C57BL6NJ_T0019485.1 MGP_C57BL6NJ_G0016259.1 mouse_genomes_project 1 17591222 17623342 + MGP_C57BL6NJ_P0019485 Tfap2b protein_coding protein_coding MGP_C57BL6NJ_T0019486.1 MGP_C57BL6NJ_G0016259.1 mouse_genomes_project 1 17591268 17622849 + MGP_C57BL6NJ_P0019486 Tfap2b protein_coding protein_coding MGP_C57BL6NJ_T0019487.1 MGP_C57BL6NJ_G0016259.1 mouse_genomes_project 1 17594416 17619390 + MGP_C57BL6NJ_P0019487 Tfap2b protein_coding protein_coding MGP_C57BL6NJ_T0019488.1 MGP_C57BL6NJ_G0016259.1 mouse_genomes_project 1 17594739 17596975 + Tfap2b protein_coding retained_intron MGP_C57BL6NJ_T0019489.1 MGP_C57BL6NJ_G0016259.1 mouse_genomes_project 1 17596411 17601907 + Tfap2b protein_coding retained_intron MGP_C57BL6NJ_T0000774.1 MGP_C57BL6NJ_G0000689.1 mouse_genomes_project 1 144883054 144885307 + TEC TEC MGP_C57BL6NJ_T0020781.1 MGP_C57BL6NJ_G0016507.1 mouse_genomes_project 1 69680485 69711361 - MGP_C57BL6NJ_P0020781 Acadl protein_coding protein_coding MGP_C57BL6NJ_T0020782.1 MGP_C57BL6NJ_G0016507.1 mouse_genomes_project 1 69693572 69706415 - Acadl protein_coding processed_transcript MGP_C57BL6NJ_T0009753.1 MGP_C57BL6NJ_G0007838.1 mouse_genomes_project 1 203755042 203755130 - miRNA miRNA MGP_C57BL6NJ_T0102391.1 MGP_C57BL6NJ_G0040322.1 mouse_genomes_project 1 185681786 185684305 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0022026.1 MGP_C57BL6NJ_G0016761.1 mouse_genomes_project 1 104169030 104258538 + MGP_C57BL6NJ_P0022026 Slco6d1 protein_coding protein_coding MGP_C57BL6NJ_T0022027.1 MGP_C57BL6NJ_G0016761.1 mouse_genomes_project 1 104169033 104269069 + MGP_C57BL6NJ_P0022027 Slco6d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022028.1 MGP_C57BL6NJ_G0016761.1 mouse_genomes_project 1 104169060 104258405 + MGP_C57BL6NJ_P0022028 Slco6d1 protein_coding protein_coding MGP_C57BL6NJ_T0022029.1 MGP_C57BL6NJ_G0016761.1 mouse_genomes_project 1 104247438 104258541 + Slco6d1 protein_coding processed_transcript MGP_C57BL6NJ_T0000522.1 MGP_C57BL6NJ_G0000441.1 mouse_genomes_project 1 14297226 14299547 - TEC TEC MGP_C57BL6NJ_T0000675.1 MGP_C57BL6NJ_G0000591.1 mouse_genomes_project 1 89123844 89125877 - TEC TEC MGP_C57BL6NJ_T0021130.1 MGP_C57BL6NJ_G0016571.1 mouse_genomes_project 1 78733304 78736864 - MGP_C57BL6NJ_P0021130 A630095N17Rik protein_coding protein_coding MGP_C57BL6NJ_T0021131.1 MGP_C57BL6NJ_G0016571.1 mouse_genomes_project 1 78733465 78745270 - MGP_C57BL6NJ_P0021131 A630095N17Rik protein_coding protein_coding MGP_C57BL6NJ_T0021132.1 MGP_C57BL6NJ_G0016571.1 mouse_genomes_project 1 78744042 78745282 - MGP_C57BL6NJ_P0021132 A630095N17Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024144.1 MGP_C57BL6NJ_G0017226.1 mouse_genomes_project 1 186256569 186257615 + MGP_C57BL6NJ_P0024144 Olfr420 protein_coding protein_coding MGP_C57BL6NJ_T0003071.1 MGP_C57BL6NJ_G0002879.1 mouse_genomes_project 1 171928168 171929043 + Gm37362 antisense antisense MGP_C57BL6NJ_T0000637.1 MGP_C57BL6NJ_G0000553.1 mouse_genomes_project 1 70813712 70816015 + TEC TEC MGP_C57BL6NJ_T0012336.1 MGP_C57BL6NJ_G0010381.1 mouse_genomes_project 1 62319646 62321708 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009728.1 MGP_C57BL6NJ_G0007813.1 mouse_genomes_project 1 160036415 160036527 - Gm44329 miRNA miRNA MGP_C57BL6NJ_T0024596.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202125843 202166166 - MGP_C57BL6NJ_P0024596 Kctd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024597.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202125843 202166178 - MGP_C57BL6NJ_P0024597 Kctd3 protein_coding protein_coding MGP_C57BL6NJ_T0024598.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202126999 202129371 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0024599.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202127112 202128989 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0024600.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202127224 202134266 - MGP_C57BL6NJ_P0024600 Kctd3 protein_coding protein_coding MGP_C57BL6NJ_T0024601.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202127267 202128488 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0024602.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202128549 202132279 - Kctd3 protein_coding processed_transcript MGP_C57BL6NJ_T0024603.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202134216 202137476 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0024604.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202136466 202166179 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0024605.1 MGP_C57BL6NJ_G0017326.1 mouse_genomes_project 1 202150607 202156036 - Kctd3 protein_coding retained_intron MGP_C57BL6NJ_T0012501.1 MGP_C57BL6NJ_G0010546.1 mouse_genomes_project 1 124582856 124584132 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000854.1 MGP_C57BL6NJ_G0000768.1 mouse_genomes_project 1 172762061 172768598 - TEC TEC MGP_C57BL6NJ_T0012400.1 MGP_C57BL6NJ_G0010445.1 mouse_genomes_project 1 84973503 84973975 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022830.1 MGP_C57BL6NJ_G0016941.1 mouse_genomes_project 1 145015955 145041510 - MGP_C57BL6NJ_P0022830 Mroh3 protein_coding protein_coding MGP_C57BL6NJ_T0022831.1 MGP_C57BL6NJ_G0016941.1 mouse_genomes_project 1 145016133 145025153 - MGP_C57BL6NJ_P0022831 Mroh3 protein_coding protein_coding MGP_C57BL6NJ_T0022832.1 MGP_C57BL6NJ_G0016941.1 mouse_genomes_project 1 145016143 145017382 - Mroh3 protein_coding retained_intron MGP_C57BL6NJ_T0022833.1 MGP_C57BL6NJ_G0016941.1 mouse_genomes_project 1 145016267 145045789 - MGP_C57BL6NJ_P0022833 Mroh3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022834.1 MGP_C57BL6NJ_G0016941.1 mouse_genomes_project 1 145025225 145034011 - MGP_C57BL6NJ_P0022834 Mroh3 protein_coding protein_coding MGP_C57BL6NJ_T0100911.1 MGP_C57BL6NJ_G0038957.1 mouse_genomes_project 1 146708599 146708715 + Gm22727 snoRNA snoRNA MGP_C57BL6NJ_T0011503.1 MGP_C57BL6NJ_G0009588.1 mouse_genomes_project 1 52148225 52148539 + Gm25843 misc_RNA misc_RNA MGP_C57BL6NJ_T0012183.1 MGP_C57BL6NJ_G0010228.1 mouse_genomes_project 1 14790231 14790914 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100882.1 MGP_C57BL6NJ_G0038928.1 mouse_genomes_project 1 70136057 70136186 + Gm26342 snoRNA snoRNA MGP_C57BL6NJ_T0000717.1 MGP_C57BL6NJ_G0000633.1 mouse_genomes_project 1 117612363 117615360 - TEC TEC MGP_C57BL6NJ_T0012207.1 MGP_C57BL6NJ_G0010252.1 mouse_genomes_project 1 21443625 21444427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012413.1 MGP_C57BL6NJ_G0010458.1 mouse_genomes_project 1 90906250 90906577 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000548.1 MGP_C57BL6NJ_G0000465.1 mouse_genomes_project 1 24736361 24740305 - TEC TEC MGP_C57BL6NJ_T0024803.1 MGP_C57BL6NJ_G0017364.1 mouse_genomes_project 1 206807992 206831945 - MGP_C57BL6NJ_P0024803 Camk1g protein_coding protein_coding MGP_C57BL6NJ_T0024804.1 MGP_C57BL6NJ_G0017364.1 mouse_genomes_project 1 206807992 206831872 - MGP_C57BL6NJ_P0024804 Camk1g protein_coding protein_coding MGP_C57BL6NJ_T0024805.1 MGP_C57BL6NJ_G0017364.1 mouse_genomes_project 1 206810407 206821425 - MGP_C57BL6NJ_P0024805 Camk1g protein_coding protein_coding MGP_C57BL6NJ_T0024806.1 MGP_C57BL6NJ_G0017364.1 mouse_genomes_project 1 206816442 206831892 - Camk1g protein_coding retained_intron MGP_C57BL6NJ_T0021654.1 MGP_C57BL6NJ_G0016676.1 mouse_genomes_project 1 92976603 92996654 + MGP_C57BL6NJ_P0021654 Ugt1a2 protein_coding protein_coding MGP_C57BL6NJ_T0012676.1 MGP_C57BL6NJ_G0010721.1 mouse_genomes_project 1 208363770 208364128 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012388.1 MGP_C57BL6NJ_G0010433.1 mouse_genomes_project 1 79173744 79175420 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099312.1 MGP_C57BL6NJ_G0037375.1 mouse_genomes_project 1 176671233 176674308 - Gm37864 sense_intronic sense_intronic MGP_C57BL6NJ_T0023573.1 MGP_C57BL6NJ_G0017080.1 mouse_genomes_project 1 175163460 175172898 + MGP_C57BL6NJ_P0023573 Sele protein_coding protein_coding MGP_C57BL6NJ_T0099635.1 MGP_C57BL6NJ_G0037681.1 mouse_genomes_project 1 150518949 150519056 + Gm25457 snRNA snRNA MGP_C57BL6NJ_T0021978.1 MGP_C57BL6NJ_G0016749.1 mouse_genomes_project 1 99154016 99325252 + Gm6086 protein_coding processed_transcript MGP_C57BL6NJ_T0021979.1 MGP_C57BL6NJ_G0016749.1 mouse_genomes_project 1 99154056 99328691 + MGP_C57BL6NJ_P0021979 Gm6086 protein_coding protein_coding MGP_C57BL6NJ_T0021981.1 MGP_C57BL6NJ_G0016749.1 mouse_genomes_project 1 99158669 99325466 + MGP_C57BL6NJ_P0021981 Gm6086 protein_coding protein_coding MGP_C57BL6NJ_T0000800.1 MGP_C57BL6NJ_G0000714.1 mouse_genomes_project 1 154749744 154755077 - TEC TEC MGP_C57BL6NJ_T0005900.1 MGP_C57BL6NJ_G0004951.1 mouse_genomes_project 1 59541346 59559669 - 4930558J18Rik lincRNA lincRNA MGP_C57BL6NJ_T0022766.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144226691 144385199 - MGP_C57BL6NJ_P0022766 Nav1 protein_coding protein_coding MGP_C57BL6NJ_T0022767.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144226691 144384849 - MGP_C57BL6NJ_P0022767 Nav1 protein_coding protein_coding MGP_C57BL6NJ_T0022768.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144230946 144406612 - MGP_C57BL6NJ_P0022768 Nav1 protein_coding protein_coding MGP_C57BL6NJ_T0022769.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144252136 144253669 - Nav1 protein_coding retained_intron MGP_C57BL6NJ_T0022770.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144255077 144267435 - MGP_C57BL6NJ_P0022770 Nav1 protein_coding protein_coding MGP_C57BL6NJ_T0022771.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144257543 144260951 - Nav1 protein_coding retained_intron MGP_C57BL6NJ_T0022772.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144257543 144309885 - Nav1 protein_coding retained_intron MGP_C57BL6NJ_T0022773.1 MGP_C57BL6NJ_G0016929.1 mouse_genomes_project 1 144258441 144309952 - Nav1 protein_coding processed_transcript MGP_C57BL6NJ_T0012127.1 MGP_C57BL6NJ_G0010172.1 mouse_genomes_project 1 1632736 1637791 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006087.1 MGP_C57BL6NJ_G0005100.1 mouse_genomes_project 1 147687279 147728754 - Gm5833 lincRNA lincRNA MGP_C57BL6NJ_T0006088.1 MGP_C57BL6NJ_G0005100.1 mouse_genomes_project 1 147718106 147728742 - Gm5833 lincRNA lincRNA MGP_C57BL6NJ_T0012651.1 MGP_C57BL6NJ_G0010696.1 mouse_genomes_project 1 194032335 194032628 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003072.1 MGP_C57BL6NJ_G0002880.1 mouse_genomes_project 1 171938206 171939001 + Gm37634 antisense antisense MGP_C57BL6NJ_T0012550.1 MGP_C57BL6NJ_G0010595.1 mouse_genomes_project 1 147208989 147209473 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012559.1 MGP_C57BL6NJ_G0010604.1 mouse_genomes_project 1 151781897 151782512 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012619.1 MGP_C57BL6NJ_G0010664.1 mouse_genomes_project 1 177206257 177208166 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024746.1 MGP_C57BL6NJ_G0017355.1 mouse_genomes_project 1 206280735 206292004 - MGP_C57BL6NJ_P0024746 Sertad4 protein_coding protein_coding MGP_C57BL6NJ_T0024747.1 MGP_C57BL6NJ_G0017355.1 mouse_genomes_project 1 206280736 206287995 - MGP_C57BL6NJ_P0024747 Sertad4 protein_coding protein_coding MGP_C57BL6NJ_T0024748.1 MGP_C57BL6NJ_G0017355.1 mouse_genomes_project 1 206283310 206287995 - MGP_C57BL6NJ_P0024748 Sertad4 protein_coding protein_coding MGP_C57BL6NJ_T0024749.1 MGP_C57BL6NJ_G0017355.1 mouse_genomes_project 1 206290449 206291734 - Sertad4 protein_coding processed_transcript MGP_C57BL6NJ_T0020925.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77783664 77805009 - MGP_C57BL6NJ_P0020925 Tmbim1 protein_coding protein_coding MGP_C57BL6NJ_T0020926.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77783668 77804955 - Tmbim1 protein_coding retained_intron MGP_C57BL6NJ_T0020927.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77783668 77791152 - Tmbim1 protein_coding retained_intron MGP_C57BL6NJ_T0020928.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77783670 77804965 - MGP_C57BL6NJ_P0020928 Tmbim1 protein_coding protein_coding MGP_C57BL6NJ_T0020929.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77784717 77786646 - MGP_C57BL6NJ_P0020929 Tmbim1 protein_coding protein_coding MGP_C57BL6NJ_T0020930.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77788979 77804819 - Tmbim1 protein_coding processed_transcript MGP_C57BL6NJ_T0020931.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77789327 77806226 - MGP_C57BL6NJ_P0020931 Tmbim1 protein_coding protein_coding MGP_C57BL6NJ_T0020932.1 MGP_C57BL6NJ_G0016538.1 mouse_genomes_project 1 77789344 77804724 - MGP_C57BL6NJ_P0020932 Tmbim1 protein_coding protein_coding MGP_C57BL6NJ_T0021992.1 MGP_C57BL6NJ_G0016755.1 mouse_genomes_project 1 102465948 102524852 - MGP_C57BL6NJ_P0021992 Slco4c1 protein_coding protein_coding MGP_C57BL6NJ_T0021155.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78827058 78836112 - MGP_C57BL6NJ_P0021155 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021156.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78827677 78836459 - MGP_C57BL6NJ_P0021156 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021157.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78828301 78832878 - Dnpep protein_coding retained_intron MGP_C57BL6NJ_T0021158.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78831586 78836528 - Dnpep protein_coding retained_intron MGP_C57BL6NJ_T0021159.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78833482 78835922 - MGP_C57BL6NJ_P0021159 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021160.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78833485 78836140 - MGP_C57BL6NJ_P0021160 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021161.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78834320 78836432 - MGP_C57BL6NJ_P0021161 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021162.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78835102 78836566 - MGP_C57BL6NJ_P0021162 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021163.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78835465 78836491 - Dnpep protein_coding retained_intron MGP_C57BL6NJ_T0021164.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78835488 78837109 - MGP_C57BL6NJ_P0021164 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0021165.1 MGP_C57BL6NJ_G0016575.1 mouse_genomes_project 1 78835672 78836501 - MGP_C57BL6NJ_P0021165 Dnpep protein_coding protein_coding MGP_C57BL6NJ_T0100863.1 MGP_C57BL6NJ_G0038909.1 mouse_genomes_project 1 39918144 39918274 - Gm23722 snoRNA snoRNA MGP_C57BL6NJ_T0012374.1 MGP_C57BL6NJ_G0010419.1 mouse_genomes_project 1 71216829 71217276 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012158.1 MGP_C57BL6NJ_G0010203.1 mouse_genomes_project 1 6341768 6342108 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012233.1 MGP_C57BL6NJ_G0010278.1 mouse_genomes_project 1 32820418 32822549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022122.1 MGP_C57BL6NJ_G0016787.1 mouse_genomes_project 1 122705127 123670455 + MGP_C57BL6NJ_P0022122 Cntnap5a protein_coding protein_coding MGP_C57BL6NJ_T0022123.1 MGP_C57BL6NJ_G0016787.1 mouse_genomes_project 1 122925984 123663805 + MGP_C57BL6NJ_P0022123 Cntnap5a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000825.1 MGP_C57BL6NJ_G0000739.1 mouse_genomes_project 1 167076681 167081796 + TEC TEC MGP_C57BL6NJ_T0012279.1 MGP_C57BL6NJ_G0010324.1 mouse_genomes_project 1 45651016 45651486 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012152.1 MGP_C57BL6NJ_G0010197.1 mouse_genomes_project 1 5007683 5007969 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020999.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78132417 78169987 + MGP_C57BL6NJ_P0020999 Stk36 protein_coding protein_coding MGP_C57BL6NJ_T0021000.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78132452 78169984 + Stk36 protein_coding retained_intron MGP_C57BL6NJ_T0021001.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78132475 78167193 + MGP_C57BL6NJ_P0021001 Stk36 protein_coding protein_coding MGP_C57BL6NJ_T0021002.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78132486 78136526 + MGP_C57BL6NJ_P0021002 Stk36 protein_coding protein_coding MGP_C57BL6NJ_T0021003.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78132611 78169136 + MGP_C57BL6NJ_P0021003 Stk36 protein_coding protein_coding MGP_C57BL6NJ_T0021004.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78134210 78141036 + MGP_C57BL6NJ_P0021004 Stk36 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021005.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78155480 78159029 + Stk36 protein_coding retained_intron MGP_C57BL6NJ_T0021006.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78155957 78169179 + Stk36 protein_coding processed_transcript MGP_C57BL6NJ_T0021007.1 MGP_C57BL6NJ_G0016549.1 mouse_genomes_project 1 78159582 78169987 + Stk36 protein_coding retained_intron MGP_C57BL6NJ_T0024539.1 MGP_C57BL6NJ_G0017314.1 mouse_genomes_project 1 198139855 198187681 - MGP_C57BL6NJ_P0024539 Iars2 protein_coding protein_coding MGP_C57BL6NJ_T0024540.1 MGP_C57BL6NJ_G0017314.1 mouse_genomes_project 1 198140698 198143412 - Iars2 protein_coding processed_transcript MGP_C57BL6NJ_T0024541.1 MGP_C57BL6NJ_G0017314.1 mouse_genomes_project 1 198150167 198187681 - MGP_C57BL6NJ_P0024541 Iars2 protein_coding protein_coding MGP_C57BL6NJ_T0024542.1 MGP_C57BL6NJ_G0017314.1 mouse_genomes_project 1 198168926 198187681 - MGP_C57BL6NJ_P0024542 Iars2 protein_coding protein_coding MGP_C57BL6NJ_T0024543.1 MGP_C57BL6NJ_G0017314.1 mouse_genomes_project 1 198179467 198187681 - Iars2 protein_coding retained_intron MGP_C57BL6NJ_T0000640.1 MGP_C57BL6NJ_G0000556.1 mouse_genomes_project 1 71604780 71606186 - TEC TEC MGP_C57BL6NJ_T0023296.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167330053 167481773 - MGP_C57BL6NJ_P0023296 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023297.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167332647 167481714 - MGP_C57BL6NJ_P0023297 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023298.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167332647 167481770 - MGP_C57BL6NJ_P0023298 Ralgps2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023299.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167333597 167481558 - MGP_C57BL6NJ_P0023299 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023300.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167334003 167481702 - MGP_C57BL6NJ_P0023300 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023301.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167334009 167481779 - MGP_C57BL6NJ_P0023301 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023302.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167338789 167481797 - MGP_C57BL6NJ_P0023302 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023303.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167342232 167481738 - MGP_C57BL6NJ_P0023303 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023304.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167344585 167481764 - MGP_C57BL6NJ_P0023304 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023305.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167344604 167480989 - MGP_C57BL6NJ_P0023305 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023306.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167354206 167356556 - Ralgps2 protein_coding retained_intron MGP_C57BL6NJ_T0023307.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167354260 167358400 - Ralgps2 protein_coding retained_intron MGP_C57BL6NJ_T0023310.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167423276 167481305 - MGP_C57BL6NJ_P0023310 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0023311.1 MGP_C57BL6NJ_G0017031.1 mouse_genomes_project 1 167440852 167480952 - MGP_C57BL6NJ_P0023311 Ralgps2 protein_coding protein_coding MGP_C57BL6NJ_T0012294.1 MGP_C57BL6NJ_G0010339.1 mouse_genomes_project 1 48784785 48786116 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022180.1 MGP_C57BL6NJ_G0016799.1 mouse_genomes_project 1 126909426 126943845 - MGP_C57BL6NJ_P0022180 Ralb protein_coding protein_coding MGP_C57BL6NJ_T0022181.1 MGP_C57BL6NJ_G0016799.1 mouse_genomes_project 1 126911266 126917187 - MGP_C57BL6NJ_P0022181 Ralb protein_coding protein_coding MGP_C57BL6NJ_T0022182.1 MGP_C57BL6NJ_G0016799.1 mouse_genomes_project 1 126920240 126943845 - Ralb protein_coding retained_intron MGP_C57BL6NJ_T0012325.1 MGP_C57BL6NJ_G0010370.1 mouse_genomes_project 1 57390575 57391468 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012581.1 MGP_C57BL6NJ_G0010626.1 mouse_genomes_project 1 161198482 161199349 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023111.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163188645 163371694 + MGP_C57BL6NJ_P0023111 Nmnat2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023112.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163188650 163371791 + MGP_C57BL6NJ_P0023112 Nmnat2 protein_coding protein_coding MGP_C57BL6NJ_T0023113.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163188693 163343728 + MGP_C57BL6NJ_P0023113 Nmnat2 protein_coding protein_coding MGP_C57BL6NJ_T0023114.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163188926 163324554 + Nmnat2 protein_coding processed_transcript MGP_C57BL6NJ_T0023115.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163274851 163321867 + Nmnat2 protein_coding retained_intron MGP_C57BL6NJ_T0023116.1 MGP_C57BL6NJ_G0016996.1 mouse_genomes_project 1 163343119 163344237 + Nmnat2 protein_coding processed_transcript MGP_C57BL6NJ_T0000512.1 MGP_C57BL6NJ_G0000431.1 mouse_genomes_project 1 11175990 11177860 - TEC TEC MGP_C57BL6NJ_T0000848.1 MGP_C57BL6NJ_G0000762.1 mouse_genomes_project 1 171783288 171785119 + TEC TEC MGP_C57BL6NJ_T0022084.1 MGP_C57BL6NJ_G0016774.1 mouse_genomes_project 1 113272788 113295401 + MGP_C57BL6NJ_P0022084 Serpinb12 protein_coding protein_coding MGP_C57BL6NJ_T0022085.1 MGP_C57BL6NJ_G0016774.1 mouse_genomes_project 1 113277273 113295401 + MGP_C57BL6NJ_P0022085 Serpinb12 protein_coding protein_coding MGP_C57BL6NJ_T0022086.1 MGP_C57BL6NJ_G0016774.1 mouse_genomes_project 1 113277275 113288779 + Serpinb12 protein_coding retained_intron MGP_C57BL6NJ_T0002963.1 MGP_C57BL6NJ_G0002797.1 mouse_genomes_project 1 64273328 64357423 - Pard3bos1 antisense antisense MGP_C57BL6NJ_T0002964.1 MGP_C57BL6NJ_G0002797.1 mouse_genomes_project 1 64292059 64357501 - Pard3bos1 antisense antisense MGP_C57BL6NJ_T0005883.1 MGP_C57BL6NJ_G0004938.1 mouse_genomes_project 1 52430919 52433246 + Gm28321 lincRNA lincRNA MGP_C57BL6NJ_T0006208.1 MGP_C57BL6NJ_G0005192.1 mouse_genomes_project 1 200457306 200472092 + Gm37896 lincRNA lincRNA MGP_C57BL6NJ_T0024141.1 MGP_C57BL6NJ_G0017223.1 mouse_genomes_project 1 186181084 186182032 + MGP_C57BL6NJ_P0024141 Olfr427 protein_coding protein_coding MGP_C57BL6NJ_T0019307.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642364 7643720 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019308.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642383 7652741 + MGP_C57BL6NJ_P0019308 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019309.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642594 7745448 + MGP_C57BL6NJ_P0019309 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019310.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642603 7667904 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019311.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642626 7665189 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019312.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7642639 7673419 + MGP_C57BL6NJ_P0019312 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019313.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644144 7665013 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019314.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644150 7674634 + MGP_C57BL6NJ_P0019314 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019315.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644150 7674277 + MGP_C57BL6NJ_P0019315 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019316.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644154 7664999 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019317.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644162 7673403 + MGP_C57BL6NJ_P0019317 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019318.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644200 7666124 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019319.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7644532 7664964 + MGP_C57BL6NJ_P0019319 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019320.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7651699 7744825 + MGP_C57BL6NJ_P0019320 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019321.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7663064 7672876 + MGP_C57BL6NJ_P0019321 Cspp1 protein_coding protein_coding MGP_C57BL6NJ_T0019322.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7677539 7682548 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019323.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7680738 7693039 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019324.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7681216 7691399 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019325.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7681269 7697477 + MGP_C57BL6NJ_P0019325 Cspp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019326.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7694968 7697539 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019327.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7703164 7716566 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019328.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7712217 7716555 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019329.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7720804 7742916 + MGP_C57BL6NJ_P0019329 Cspp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019330.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7723353 7724635 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019331.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7734921 7738761 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019332.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7738701 7742204 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0019333.1 MGP_C57BL6NJ_G0016225.1 mouse_genomes_project 1 7742712 7745002 + Cspp1 protein_coding retained_intron MGP_C57BL6NJ_T0024659.1 MGP_C57BL6NJ_G0017336.1 mouse_genomes_project 1 204364249 204372237 + MGP_C57BL6NJ_P0024659 Spata45 protein_coding protein_coding MGP_C57BL6NJ_T0024660.1 MGP_C57BL6NJ_G0017336.1 mouse_genomes_project 1 204364429 204372244 + MGP_C57BL6NJ_P0024660 Spata45 protein_coding protein_coding MGP_C57BL6NJ_T0000896.1 MGP_C57BL6NJ_G0000809.1 mouse_genomes_project 1 192818264 192819136 + TEC TEC MGP_C57BL6NJ_T0012526.1 MGP_C57BL6NJ_G0010571.1 mouse_genomes_project 1 131007946 131010579 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019974.1 MGP_C57BL6NJ_G0016356.1 mouse_genomes_project 1 40612724 40709659 + MGP_C57BL6NJ_P0019974 Il1r1 protein_coding protein_coding MGP_C57BL6NJ_T0019975.1 MGP_C57BL6NJ_G0016356.1 mouse_genomes_project 1 40654783 40665304 + Il1r1 protein_coding processed_transcript MGP_C57BL6NJ_T0019976.1 MGP_C57BL6NJ_G0016356.1 mouse_genomes_project 1 40670749 40705795 + MGP_C57BL6NJ_P0019976 Il1r1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000816.1 MGP_C57BL6NJ_G0000730.1 mouse_genomes_project 1 163742159 163742979 + TEC TEC MGP_C57BL6NJ_T0022098.1 MGP_C57BL6NJ_G0016781.1 mouse_genomes_project 1 113919992 113934889 + MGP_C57BL6NJ_P0022098 Serpinb2 protein_coding protein_coding MGP_C57BL6NJ_T0022099.1 MGP_C57BL6NJ_G0016781.1 mouse_genomes_project 1 113920066 113934883 + MGP_C57BL6NJ_P0022099 Serpinb2 protein_coding protein_coding MGP_C57BL6NJ_T0022100.1 MGP_C57BL6NJ_G0016781.1 mouse_genomes_project 1 113931562 113946234 + MGP_C57BL6NJ_P0022100 Serpinb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022101.1 MGP_C57BL6NJ_G0016781.1 mouse_genomes_project 1 113933276 113941826 + MGP_C57BL6NJ_P0022101 Serpinb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021581.1 MGP_C57BL6NJ_G0016659.1 mouse_genomes_project 1 92143267 92148422 + MGP_C57BL6NJ_P0021581 3110079O15Rik protein_coding protein_coding MGP_C57BL6NJ_T0021582.1 MGP_C57BL6NJ_G0016659.1 mouse_genomes_project 1 92145478 92148398 + 3110079O15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0005926.1 MGP_C57BL6NJ_G0004971.1 mouse_genomes_project 1 67336654 67339475 + Gm29152 lincRNA lincRNA MGP_C57BL6NJ_T0012457.1 MGP_C57BL6NJ_G0010502.1 mouse_genomes_project 1 106545866 106546223 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012562.1 MGP_C57BL6NJ_G0010607.1 mouse_genomes_project 1 152457085 152458355 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000820.1 MGP_C57BL6NJ_G0000734.1 mouse_genomes_project 1 166340076 166340821 - TEC TEC MGP_C57BL6NJ_T0000654.1 MGP_C57BL6NJ_G0000570.1 mouse_genomes_project 1 82140282 82141100 + TEC TEC MGP_C57BL6NJ_T0009721.1 MGP_C57BL6NJ_G0007806.1 mouse_genomes_project 1 140705052 140705149 + Mir135b miRNA miRNA MGP_C57BL6NJ_T0023374.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170836936 170840383 + 4930523C07Rik protein_coding retained_intron MGP_C57BL6NJ_T0023375.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170836938 170863719 + 4930523C07Rik protein_coding lincRNA MGP_C57BL6NJ_T0023376.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170836938 170872387 + 4930523C07Rik protein_coding lincRNA MGP_C57BL6NJ_T0023377.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170836959 170864961 + 4930523C07Rik protein_coding lincRNA MGP_C57BL6NJ_T0023378.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170837001 170863688 + 4930523C07Rik protein_coding lincRNA MGP_C57BL6NJ_T0023379.1 MGP_C57BL6NJ_G0017042.1 mouse_genomes_project 1 170867340 170867640 + MGP_C57BL6NJ_P0023379 4930523C07Rik protein_coding protein_coding MGP_C57BL6NJ_T0099627.1 MGP_C57BL6NJ_G0037673.1 mouse_genomes_project 1 139485852 139485946 - Gm25549 snRNA snRNA MGP_C57BL6NJ_T0099637.1 MGP_C57BL6NJ_G0037683.1 mouse_genomes_project 1 154372393 154372499 - Gm22681 snRNA snRNA MGP_C57BL6NJ_T0005954.1 MGP_C57BL6NJ_G0004990.1 mouse_genomes_project 1 79586467 79588566 - Gm29065 lincRNA lincRNA MGP_C57BL6NJ_T0000888.1 MGP_C57BL6NJ_G0000802.1 mouse_genomes_project 1 189423694 189424490 - TEC TEC MGP_C57BL6NJ_T0023630.1 MGP_C57BL6NJ_G0017096.1 mouse_genomes_project 1 176680315 176684330 + Mpc2 protein_coding retained_intron MGP_C57BL6NJ_T0023631.1 MGP_C57BL6NJ_G0017096.1 mouse_genomes_project 1 176680715 176701976 + MGP_C57BL6NJ_P0023631 Mpc2 protein_coding protein_coding MGP_C57BL6NJ_T0023632.1 MGP_C57BL6NJ_G0017096.1 mouse_genomes_project 1 176680902 176698456 + Mpc2 protein_coding retained_intron MGP_C57BL6NJ_T0023633.1 MGP_C57BL6NJ_G0017096.1 mouse_genomes_project 1 176681043 176701870 + MGP_C57BL6NJ_P0023633 Mpc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023634.1 MGP_C57BL6NJ_G0017096.1 mouse_genomes_project 1 176698903 176701881 + Mpc2 protein_coding processed_transcript MGP_C57BL6NJ_T0019951.1 MGP_C57BL6NJ_G0016353.1 mouse_genomes_project 1 40161231 40162416 - MGP_C57BL6NJ_P0019951 Gm3646 protein_coding protein_coding MGP_C57BL6NJ_T0012273.1 MGP_C57BL6NJ_G0010318.1 mouse_genomes_project 1 44652851 44653667 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012217.1 MGP_C57BL6NJ_G0010262.1 mouse_genomes_project 1 25520483 25521134 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023578.1 MGP_C57BL6NJ_G0017082.1 mouse_genomes_project 1 175232080 175268452 + MGP_C57BL6NJ_P0023578 Selp protein_coding protein_coding MGP_C57BL6NJ_T0023579.1 MGP_C57BL6NJ_G0017082.1 mouse_genomes_project 1 175259803 175261278 + Selp protein_coding retained_intron MGP_C57BL6NJ_T0023580.1 MGP_C57BL6NJ_G0017082.1 mouse_genomes_project 1 175260362 175267567 + MGP_C57BL6NJ_P0023580 Selp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023581.1 MGP_C57BL6NJ_G0017082.1 mouse_genomes_project 1 175263187 175268437 + Selp protein_coding retained_intron MGP_C57BL6NJ_T0023582.1 MGP_C57BL6NJ_G0017082.1 mouse_genomes_project 1 175265198 175267580 + Selp protein_coding retained_intron MGP_C57BL6NJ_T0000516.1 MGP_C57BL6NJ_G0000435.1 mouse_genomes_project 1 11751565 11753814 - TEC TEC MGP_C57BL6NJ_T0000700.1 MGP_C57BL6NJ_G0000616.1 mouse_genomes_project 1 98779160 98781548 + TEC TEC MGP_C57BL6NJ_T0024443.1 MGP_C57BL6NJ_G0017291.1 mouse_genomes_project 1 194864421 194865597 - MGP_C57BL6NJ_P0024443 Vmn1r1 protein_coding protein_coding MGP_C57BL6NJ_T0022467.1 MGP_C57BL6NJ_G0016865.1 mouse_genomes_project 1 140333173 140339255 + MGP_C57BL6NJ_P0022467 Rab29 protein_coding protein_coding MGP_C57BL6NJ_T0022468.1 MGP_C57BL6NJ_G0016865.1 mouse_genomes_project 1 140333189 140339403 + MGP_C57BL6NJ_P0022468 Rab29 protein_coding protein_coding MGP_C57BL6NJ_T0022469.1 MGP_C57BL6NJ_G0016865.1 mouse_genomes_project 1 140333460 140339018 + MGP_C57BL6NJ_P0022469 Rab29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022470.1 MGP_C57BL6NJ_G0016865.1 mouse_genomes_project 1 140333602 140336927 + Rab29 protein_coding retained_intron MGP_C57BL6NJ_T0020663.1 MGP_C57BL6NJ_G0016482.1 mouse_genomes_project 1 66336915 66368425 - MGP_C57BL6NJ_P0020663 Mdh1b protein_coding protein_coding MGP_C57BL6NJ_T0099287.1 MGP_C57BL6NJ_G0037351.1 mouse_genomes_project 1 52786120 52788412 + Gm28320 sense_intronic sense_intronic MGP_C57BL6NJ_T0012261.1 MGP_C57BL6NJ_G0010306.1 mouse_genomes_project 1 39003673 39004175 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021281.1 MGP_C57BL6NJ_G0016595.1 mouse_genomes_project 1 83324086 83329538 - MGP_C57BL6NJ_P0021281 Scg2 protein_coding protein_coding MGP_C57BL6NJ_T0021282.1 MGP_C57BL6NJ_G0016595.1 mouse_genomes_project 1 83324086 83329460 - MGP_C57BL6NJ_P0021282 Scg2 protein_coding protein_coding MGP_C57BL6NJ_T0020383.1 MGP_C57BL6NJ_G0016437.1 mouse_genomes_project 1 60318948 60320828 + Aox3 protein_coding retained_intron MGP_C57BL6NJ_T0020384.1 MGP_C57BL6NJ_G0016437.1 mouse_genomes_project 1 60318954 60408371 + MGP_C57BL6NJ_P0020384 Aox3 protein_coding protein_coding MGP_C57BL6NJ_T0020385.1 MGP_C57BL6NJ_G0016437.1 mouse_genomes_project 1 60318956 60327924 + Aox3 protein_coding retained_intron MGP_C57BL6NJ_T0020386.1 MGP_C57BL6NJ_G0016437.1 mouse_genomes_project 1 60319004 60343785 + MGP_C57BL6NJ_P0020386 Aox3 protein_coding protein_coding MGP_C57BL6NJ_T0020387.1 MGP_C57BL6NJ_G0016437.1 mouse_genomes_project 1 60375947 60378571 + Aox3 protein_coding retained_intron MGP_C57BL6NJ_T0099596.1 MGP_C57BL6NJ_G0037642.1 mouse_genomes_project 1 67703961 67704117 - Gm24788 snRNA snRNA MGP_C57BL6NJ_T0000501.1 MGP_C57BL6NJ_G0000420.1 mouse_genomes_project 1 7663165 7664085 - TEC TEC MGP_C57BL6NJ_T0023604.1 MGP_C57BL6NJ_G0017088.1 mouse_genomes_project 1 175563585 175584830 - MGP_C57BL6NJ_P0023604 Atp1b1 protein_coding protein_coding MGP_C57BL6NJ_T0023605.1 MGP_C57BL6NJ_G0017088.1 mouse_genomes_project 1 175567935 175570196 - Atp1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0023606.1 MGP_C57BL6NJ_G0017088.1 mouse_genomes_project 1 175567935 175580263 - MGP_C57BL6NJ_P0023606 Atp1b1 protein_coding protein_coding MGP_C57BL6NJ_T0023607.1 MGP_C57BL6NJ_G0017088.1 mouse_genomes_project 1 175579747 175584497 - Atp1b1 protein_coding retained_intron MGP_C57BL6NJ_T0024511.1 MGP_C57BL6NJ_G0017307.1 mouse_genomes_project 1 196778511 196779783 - 1700056E22Rik protein_coding antisense MGP_C57BL6NJ_T0024512.1 MGP_C57BL6NJ_G0017307.1 mouse_genomes_project 1 196778513 196779480 - MGP_C57BL6NJ_P0024512 1700056E22Rik protein_coding protein_coding MGP_C57BL6NJ_T0000535.1 MGP_C57BL6NJ_G0000452.1 mouse_genomes_project 1 24215520 24217071 - TEC TEC MGP_C57BL6NJ_T0019494.1 MGP_C57BL6NJ_G0016261.1 mouse_genomes_project 1 19213760 19217351 + MGP_C57BL6NJ_P0019494 Il17a protein_coding protein_coding MGP_C57BL6NJ_T0000853.1 MGP_C57BL6NJ_G0000767.1 mouse_genomes_project 1 172661762 172662885 + TEC TEC MGP_C57BL6NJ_T0019618.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565506 33572511 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0019619.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565506 33569457 + Rab23 protein_coding processed_transcript MGP_C57BL6NJ_T0019620.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565514 33589346 + MGP_C57BL6NJ_P0019620 Rab23 protein_coding protein_coding MGP_C57BL6NJ_T0019621.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565528 33589339 + MGP_C57BL6NJ_P0019621 Rab23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019622.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565529 33571096 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0019623.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33565757 33580987 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0019624.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33566026 33589343 + MGP_C57BL6NJ_P0019624 Rab23 protein_coding protein_coding MGP_C57BL6NJ_T0019625.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33580160 33587493 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0019626.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33583404 33586152 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0019627.1 MGP_C57BL6NJ_G0016293.1 mouse_genomes_project 1 33584918 33587554 + Rab23 protein_coding retained_intron MGP_C57BL6NJ_T0012596.1 MGP_C57BL6NJ_G0010641.1 mouse_genomes_project 1 167317819 167318152 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023067.1 MGP_C57BL6NJ_G0016986.1 mouse_genomes_project 1 161720326 161803684 + MGP_C57BL6NJ_P0023067 Fam129a protein_coding protein_coding MGP_C57BL6NJ_T0023068.1 MGP_C57BL6NJ_G0016986.1 mouse_genomes_project 1 161720513 161884914 + MGP_C57BL6NJ_P0023068 Fam129a protein_coding protein_coding MGP_C57BL6NJ_T0023069.1 MGP_C57BL6NJ_G0016986.1 mouse_genomes_project 1 161720592 161882317 + MGP_C57BL6NJ_P0023069 Fam129a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023070.1 MGP_C57BL6NJ_G0016986.1 mouse_genomes_project 1 161720636 161853201 + MGP_C57BL6NJ_P0023070 Fam129a protein_coding protein_coding MGP_C57BL6NJ_T0023071.1 MGP_C57BL6NJ_G0016986.1 mouse_genomes_project 1 161836944 161882317 + Fam129a protein_coding processed_transcript MGP_C57BL6NJ_T0000669.1 MGP_C57BL6NJ_G0000585.1 mouse_genomes_project 1 87266795 87269358 - TEC TEC MGP_C57BL6NJ_T0100925.1 MGP_C57BL6NJ_G0038971.1 mouse_genomes_project 1 171934570 171934636 + Snord78 snoRNA snoRNA MGP_C57BL6NJ_T0000708.1 MGP_C57BL6NJ_G0000624.1 mouse_genomes_project 1 109878137 109881026 + TEC TEC MGP_C57BL6NJ_T0019377.1 MGP_C57BL6NJ_G0016232.1 mouse_genomes_project 1 10987611 11001104 - MGP_C57BL6NJ_P0019377 Prdm14 protein_coding protein_coding MGP_C57BL6NJ_T0005969.1 MGP_C57BL6NJ_G0005002.1 mouse_genomes_project 1 84365307 84368737 + Gm29125 lincRNA lincRNA MGP_C57BL6NJ_T0024067.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184318458 184321884 + Cfap45 protein_coding retained_intron MGP_C57BL6NJ_T0024068.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184318701 184343421 + MGP_C57BL6NJ_P0024068 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0024069.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184318793 184330282 + Cfap45 protein_coding retained_intron MGP_C57BL6NJ_T0024070.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184318796 184330176 + MGP_C57BL6NJ_P0024070 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0024071.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184318838 184330153 + MGP_C57BL6NJ_P0024071 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0024072.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184323706 184330236 + MGP_C57BL6NJ_P0024072 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0024073.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184324067 184330236 + MGP_C57BL6NJ_P0024073 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0024074.1 MGP_C57BL6NJ_G0017193.1 mouse_genomes_project 1 184335167 184338117 + MGP_C57BL6NJ_P0024074 Cfap45 protein_coding protein_coding MGP_C57BL6NJ_T0006005.1 MGP_C57BL6NJ_G0005035.1 mouse_genomes_project 1 100262432 100267820 + 4930440C22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006006.1 MGP_C57BL6NJ_G0005035.1 mouse_genomes_project 1 100262791 100267840 + 4930440C22Rik lincRNA lincRNA MGP_C57BL6NJ_T0012126.1 MGP_C57BL6NJ_G0010171.1 mouse_genomes_project 1 1355439 1358339 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024797.1 MGP_C57BL6NJ_G0017363.1 mouse_genomes_project 1 206732075 206733132 - MGP_C57BL6NJ_P0024797 G0s2 protein_coding protein_coding MGP_C57BL6NJ_T0021525.1 MGP_C57BL6NJ_G0016648.1 mouse_genomes_project 1 91770113 91773331 - MGP_C57BL6NJ_P0021525 Alppl2 protein_coding protein_coding MGP_C57BL6NJ_T0021526.1 MGP_C57BL6NJ_G0016648.1 mouse_genomes_project 1 91770114 91773348 - MGP_C57BL6NJ_P0021526 Alppl2 protein_coding protein_coding MGP_C57BL6NJ_T0021527.1 MGP_C57BL6NJ_G0016648.1 mouse_genomes_project 1 91772199 91773225 - Alppl2 protein_coding retained_intron MGP_C57BL6NJ_T0000592.1 MGP_C57BL6NJ_G0000508.1 mouse_genomes_project 1 44294695 44295987 + TEC TEC MGP_C57BL6NJ_T0012373.1 MGP_C57BL6NJ_G0010418.1 mouse_genomes_project 1 70491915 70493899 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021039.1 MGP_C57BL6NJ_G0016559.1 mouse_genomes_project 1 78503713 78510098 - MGP_C57BL6NJ_P0021039 Ihh protein_coding protein_coding MGP_C57BL6NJ_T0021040.1 MGP_C57BL6NJ_G0016559.1 mouse_genomes_project 1 78506149 78509868 - Ihh protein_coding retained_intron MGP_C57BL6NJ_T0000665.1 MGP_C57BL6NJ_G0000581.1 mouse_genomes_project 1 85571094 85573098 - TEC TEC MGP_C57BL6NJ_T0023096.1 MGP_C57BL6NJ_G0016993.1 mouse_genomes_project 1 162989878 162999752 + MGP_C57BL6NJ_P0023096 Arpc5 protein_coding protein_coding MGP_C57BL6NJ_T0023097.1 MGP_C57BL6NJ_G0016993.1 mouse_genomes_project 1 162989878 162999752 + MGP_C57BL6NJ_P0023097 Arpc5 protein_coding protein_coding MGP_C57BL6NJ_T0023098.1 MGP_C57BL6NJ_G0016993.1 mouse_genomes_project 1 162991619 162997516 + Arpc5 protein_coding retained_intron MGP_C57BL6NJ_T0012284.1 MGP_C57BL6NJ_G0010329.1 mouse_genomes_project 1 46421350 46422418 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005879.1 MGP_C57BL6NJ_G0004935.1 mouse_genomes_project 1 48441541 48475736 + Gm28826 lincRNA lincRNA MGP_C57BL6NJ_T0022228.1 MGP_C57BL6NJ_G0016810.1 mouse_genomes_project 1 127814159 127816751 + MGP_C57BL6NJ_P0022228 C1ql2 protein_coding protein_coding MGP_C57BL6NJ_T0006180.1 MGP_C57BL6NJ_G0005173.1 mouse_genomes_project 1 196274205 196274739 + Gm33973 lincRNA lincRNA MGP_C57BL6NJ_T0005987.1 MGP_C57BL6NJ_G0005017.1 mouse_genomes_project 1 93976292 93982382 + 1700067G17Rik lincRNA lincRNA MGP_C57BL6NJ_T0102668.1 MGP_C57BL6NJ_G0040463.1 mouse_genomes_project 1 109506624 109561137 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099313.1 MGP_C57BL6NJ_G0037376.1 mouse_genomes_project 1 196172500 196175730 + sense_intronic sense_intronic MGP_C57BL6NJ_T0000481.1 MGP_C57BL6NJ_G0000400.1 mouse_genomes_project 1 394730 396963 - TEC TEC MGP_C57BL6NJ_T0012286.1 MGP_C57BL6NJ_G0010331.1 mouse_genomes_project 1 46723991 46725141 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099652.1 MGP_C57BL6NJ_G0037698.1 mouse_genomes_project 1 184661147 184661252 - Gm24817 snRNA snRNA MGP_C57BL6NJ_T0023589.1 MGP_C57BL6NJ_G0017086.1 mouse_genomes_project 1 175411816 175430260 - MGP_C57BL6NJ_P0023589 Blzf1 protein_coding protein_coding MGP_C57BL6NJ_T0023590.1 MGP_C57BL6NJ_G0017086.1 mouse_genomes_project 1 175413405 175430265 - MGP_C57BL6NJ_P0023590 Blzf1 protein_coding protein_coding MGP_C57BL6NJ_T0023591.1 MGP_C57BL6NJ_G0017086.1 mouse_genomes_project 1 175414146 175430265 - MGP_C57BL6NJ_P0023591 Blzf1 protein_coding protein_coding MGP_C57BL6NJ_T0023592.1 MGP_C57BL6NJ_G0017086.1 mouse_genomes_project 1 175422317 175430048 - Blzf1 protein_coding processed_transcript MGP_C57BL6NJ_T0023594.1 MGP_C57BL6NJ_G0017086.1 mouse_genomes_project 1 175427977 175430247 - Blzf1 protein_coding retained_intron MGP_C57BL6NJ_T0012668.1 MGP_C57BL6NJ_G0010713.1 mouse_genomes_project 1 204863456 204863921 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012607.1 MGP_C57BL6NJ_G0010652.1 mouse_genomes_project 1 172695282 172696872 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024488.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196040284 196042216 + Aida protein_coding retained_intron MGP_C57BL6NJ_T0024489.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196040743 196073366 + MGP_C57BL6NJ_P0024489 Aida protein_coding protein_coding MGP_C57BL6NJ_T0024490.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196041021 196047632 + Aida protein_coding processed_transcript MGP_C57BL6NJ_T0024491.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196041213 196071321 + MGP_C57BL6NJ_P0024491 Aida protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024492.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196041264 196061736 + MGP_C57BL6NJ_P0024492 Aida protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024493.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196047549 196067204 + Aida protein_coding retained_intron MGP_C57BL6NJ_T0024494.1 MGP_C57BL6NJ_G0017302.1 mouse_genomes_project 1 196049330 196062030 + Aida protein_coding retained_intron MGP_C57BL6NJ_T0003081.1 MGP_C57BL6NJ_G0002885.1 mouse_genomes_project 1 174002782 174087400 + Gm37273 antisense antisense MGP_C57BL6NJ_T0000499.1 MGP_C57BL6NJ_G0000418.1 mouse_genomes_project 1 6814618 6817877 + TEC TEC MGP_C57BL6NJ_T0006003.1 MGP_C57BL6NJ_G0005033.1 mouse_genomes_project 1 97953834 97955102 - Gm29482 lincRNA lincRNA MGP_C57BL6NJ_T0000696.1 MGP_C57BL6NJ_G0000612.1 mouse_genomes_project 1 95946768 95947605 - TEC TEC MGP_C57BL6NJ_T0009715.1 MGP_C57BL6NJ_G0007800.1 mouse_genomes_project 1 111830157 111830253 + Gm22426 miRNA miRNA MGP_C57BL6NJ_T0024495.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196074614 196093651 - MGP_C57BL6NJ_P0024495 protein_coding protein_coding MGP_C57BL6NJ_T0024496.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196074716 196082523 - MGP_C57BL6NJ_P0024496 protein_coding protein_coding MGP_C57BL6NJ_T0024497.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196075229 196117736 - MGP_C57BL6NJ_P0024497 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024498.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196083509 196087133 - MGP_C57BL6NJ_P0024498 protein_coding protein_coding MGP_C57BL6NJ_T0024499.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196092086 196099463 - protein_coding retained_intron MGP_C57BL6NJ_T0024500.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196092582 196099441 - MGP_C57BL6NJ_P0024500 protein_coding protein_coding MGP_C57BL6NJ_T0024501.1 MGP_C57BL6NJ_G0017303.1 mouse_genomes_project 1 196106820 196117760 - MGP_C57BL6NJ_P0024501 protein_coding protein_coding MGP_C57BL6NJ_T0000564.1 MGP_C57BL6NJ_G0000481.1 mouse_genomes_project 1 33511657 33512546 + TEC TEC MGP_C57BL6NJ_T0000565.1 MGP_C57BL6NJ_G0000481.1 mouse_genomes_project 1 33511676 33512546 + TEC TEC MGP_C57BL6NJ_T0020346.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59571893 59590754 - MGP_C57BL6NJ_P0020346 Tyw5 protein_coding protein_coding MGP_C57BL6NJ_T0020347.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59571896 59590124 - Tyw5 protein_coding retained_intron MGP_C57BL6NJ_T0020348.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59571896 59590327 - MGP_C57BL6NJ_P0020348 Tyw5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020349.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59572061 59574428 - Tyw5 protein_coding processed_transcript MGP_C57BL6NJ_T0020350.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59572072 59577355 - Tyw5 protein_coding retained_intron MGP_C57BL6NJ_T0020351.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59572322 59590096 - MGP_C57BL6NJ_P0020351 Tyw5 protein_coding protein_coding MGP_C57BL6NJ_T0020352.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59572342 59575397 - Tyw5 protein_coding retained_intron MGP_C57BL6NJ_T0020353.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59574368 59585171 - Tyw5 protein_coding processed_transcript MGP_C57BL6NJ_T0020354.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59575085 59590124 - MGP_C57BL6NJ_P0020354 Tyw5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020355.1 MGP_C57BL6NJ_G0016431.1 mouse_genomes_project 1 59576841 59590190 - Tyw5 protein_coding retained_intron MGP_C57BL6NJ_T0002927.1 MGP_C57BL6NJ_G0002769.1 mouse_genomes_project 1 37836012 37837126 + 4930556I23Rik antisense antisense MGP_C57BL6NJ_T0102656.1 MGP_C57BL6NJ_G0040451.1 mouse_genomes_project 1 92872974 92873368 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006023.1 MGP_C57BL6NJ_G0005049.1 mouse_genomes_project 1 113786336 113788549 - Gm15391 lincRNA lincRNA MGP_C57BL6NJ_T0003136.1 MGP_C57BL6NJ_G0002930.1 mouse_genomes_project 1 204350138 204350975 + A230020J21Rik antisense antisense MGP_C57BL6NJ_T0003137.1 MGP_C57BL6NJ_G0002930.1 mouse_genomes_project 1 204350139 204355832 + A230020J21Rik antisense antisense MGP_C57BL6NJ_T0022717.1 MGP_C57BL6NJ_G0016918.1 mouse_genomes_project 1 143710544 143723682 + MGP_C57BL6NJ_P0022717 Ube2t protein_coding protein_coding MGP_C57BL6NJ_T0022718.1 MGP_C57BL6NJ_G0016918.1 mouse_genomes_project 1 143710570 143713814 + Ube2t protein_coding retained_intron MGP_C57BL6NJ_T0022719.1 MGP_C57BL6NJ_G0016918.1 mouse_genomes_project 1 143719258 143723679 + MGP_C57BL6NJ_P0022719 Ube2t protein_coding protein_coding MGP_C57BL6NJ_T0022720.1 MGP_C57BL6NJ_G0016918.1 mouse_genomes_project 1 143721475 143722377 + Ube2t protein_coding retained_intron MGP_C57BL6NJ_T0102652.1 MGP_C57BL6NJ_G0040447.1 mouse_genomes_project 1 92733051 92733900 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000668.1 MGP_C57BL6NJ_G0000584.1 mouse_genomes_project 1 86955302 86956348 - TEC TEC MGP_C57BL6NJ_T0000687.1 MGP_C57BL6NJ_G0000603.1 mouse_genomes_project 1 91719474 91722402 + TEC TEC MGP_C57BL6NJ_T0021420.1 MGP_C57BL6NJ_G0016624.1 mouse_genomes_project 1 90056262 90061315 - protein_coding processed_transcript MGP_C57BL6NJ_T0019615.1 MGP_C57BL6NJ_G0016292.1 mouse_genomes_project 1 33275098 33511629 - MGP_C57BL6NJ_P0019615 Prim2 protein_coding protein_coding MGP_C57BL6NJ_T0019616.1 MGP_C57BL6NJ_G0016292.1 mouse_genomes_project 1 33301528 33459208 - Prim2 protein_coding retained_intron MGP_C57BL6NJ_T0019617.1 MGP_C57BL6NJ_G0016292.1 mouse_genomes_project 1 33457940 33460390 - Prim2 protein_coding retained_intron MGP_C57BL6NJ_T0022748.1 MGP_C57BL6NJ_G0016926.1 mouse_genomes_project 1 144109670 144158058 + MGP_C57BL6NJ_P0022748 Lmod1 protein_coding protein_coding MGP_C57BL6NJ_T0099302.1 MGP_C57BL6NJ_G0037365.1 mouse_genomes_project 1 146923176 146924420 + Gm26930 sense_intronic sense_intronic MGP_C57BL6NJ_T0023080.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162571211 162588931 - MGP_C57BL6NJ_P0023080 Tsen15 protein_coding protein_coding MGP_C57BL6NJ_T0023081.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162571314 162572559 - Tsen15 protein_coding retained_intron MGP_C57BL6NJ_T0023082.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162571681 162588841 - MGP_C57BL6NJ_P0023082 Tsen15 protein_coding protein_coding MGP_C57BL6NJ_T0023083.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162571688 162585383 - Tsen15 protein_coding retained_intron MGP_C57BL6NJ_T0023084.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162572251 162585730 - Tsen15 protein_coding retained_intron MGP_C57BL6NJ_T0023085.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162584982 162588937 - Tsen15 protein_coding processed_transcript MGP_C57BL6NJ_T0023086.1 MGP_C57BL6NJ_G0016989.1 mouse_genomes_project 1 162585840 162588869 - Tsen15 protein_coding retained_intron MGP_C57BL6NJ_T0002971.1 MGP_C57BL6NJ_G0002804.1 mouse_genomes_project 1 74846302 74851027 + Apol7d antisense antisense MGP_C57BL6NJ_T0002972.1 MGP_C57BL6NJ_G0002804.1 mouse_genomes_project 1 74846353 74855787 + Apol7d antisense antisense MGP_C57BL6NJ_T0002973.1 MGP_C57BL6NJ_G0002804.1 mouse_genomes_project 1 74846800 74856577 + Apol7d antisense antisense MGP_C57BL6NJ_T0002974.1 MGP_C57BL6NJ_G0002804.1 mouse_genomes_project 1 74846804 74850815 + Apol7d antisense antisense MGP_C57BL6NJ_T0020517.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016227 62023923 + Nop58 protein_coding processed_transcript MGP_C57BL6NJ_T0020518.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016233 62043958 + MGP_C57BL6NJ_P0020518 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0020519.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016241 62028525 + MGP_C57BL6NJ_P0020519 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0020520.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016259 62023945 + Nop58 protein_coding retained_intron MGP_C57BL6NJ_T0020521.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016262 62022246 + Nop58 protein_coding retained_intron MGP_C57BL6NJ_T0020522.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016265 62053650 + MGP_C57BL6NJ_P0020522 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0020523.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016277 62028500 + MGP_C57BL6NJ_P0020523 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0020524.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62016310 62030870 + MGP_C57BL6NJ_P0020524 Nop58 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020525.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62021435 62030834 + Nop58 protein_coding retained_intron MGP_C57BL6NJ_T0020526.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62023700 62036657 + Nop58 protein_coding retained_intron MGP_C57BL6NJ_T0020527.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62028474 62036609 + MGP_C57BL6NJ_P0020527 Nop58 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020528.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62030863 62039512 + MGP_C57BL6NJ_P0020528 Nop58 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020529.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62036606 62041547 + MGP_C57BL6NJ_P0020529 Nop58 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020530.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62036645 62043727 + MGP_C57BL6NJ_P0020530 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0020531.1 MGP_C57BL6NJ_G0016460.1 mouse_genomes_project 1 62037156 62043728 + MGP_C57BL6NJ_P0020531 Nop58 protein_coding protein_coding MGP_C57BL6NJ_T0021671.1 MGP_C57BL6NJ_G0016683.1 mouse_genomes_project 1 93397313 93407472 - MGP_C57BL6NJ_P0021671 Glrp1 protein_coding protein_coding MGP_C57BL6NJ_T0022641.1 MGP_C57BL6NJ_G0016902.1 mouse_genomes_project 1 142783414 142819920 + MGP_C57BL6NJ_P0022641 Chit1 protein_coding protein_coding MGP_C57BL6NJ_T0022642.1 MGP_C57BL6NJ_G0016902.1 mouse_genomes_project 1 142783414 142819920 + MGP_C57BL6NJ_P0022642 Chit1 protein_coding protein_coding MGP_C57BL6NJ_T0022643.1 MGP_C57BL6NJ_G0016902.1 mouse_genomes_project 1 142806992 142819919 + MGP_C57BL6NJ_P0022643 Chit1 protein_coding protein_coding MGP_C57BL6NJ_T0000770.1 MGP_C57BL6NJ_G0000685.1 mouse_genomes_project 1 143558529 143566143 - TEC TEC MGP_C57BL6NJ_T0022364.1 MGP_C57BL6NJ_G0016837.1 mouse_genomes_project 1 138712872 138749076 - protein_coding retained_intron MGP_C57BL6NJ_T0022365.1 MGP_C57BL6NJ_G0016837.1 mouse_genomes_project 1 138746897 138760455 - protein_coding retained_intron MGP_C57BL6NJ_T0022366.1 MGP_C57BL6NJ_G0016837.1 mouse_genomes_project 1 138746897 138818146 - MGP_C57BL6NJ_P0022366 protein_coding protein_coding MGP_C57BL6NJ_T0012390.1 MGP_C57BL6NJ_G0010435.1 mouse_genomes_project 1 79686910 79687310 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019891.1 MGP_C57BL6NJ_G0016339.1 mouse_genomes_project 1 38245339 38309523 + MGP_C57BL6NJ_P0019891 Eif5b protein_coding protein_coding MGP_C57BL6NJ_T0019892.1 MGP_C57BL6NJ_G0016339.1 mouse_genomes_project 1 38245458 38305965 + Eif5b protein_coding retained_intron MGP_C57BL6NJ_T0019893.1 MGP_C57BL6NJ_G0016339.1 mouse_genomes_project 1 38295736 38299406 + Eif5b protein_coding retained_intron MGP_C57BL6NJ_T0019894.1 MGP_C57BL6NJ_G0016339.1 mouse_genomes_project 1 38296811 38300642 + Eif5b protein_coding processed_transcript MGP_C57BL6NJ_T0019895.1 MGP_C57BL6NJ_G0016339.1 mouse_genomes_project 1 38298599 38302769 + Eif5b protein_coding retained_intron MGP_C57BL6NJ_T0009657.1 MGP_C57BL6NJ_G0007742.1 mouse_genomes_project 1 19166527 19166600 + Mir206 miRNA miRNA MGP_C57BL6NJ_T0021502.1 MGP_C57BL6NJ_G0016642.1 mouse_genomes_project 1 91023673 91025397 + MGP_C57BL6NJ_P0021502 1700019O17Rik protein_coding protein_coding MGP_C57BL6NJ_T0099621.1 MGP_C57BL6NJ_G0037667.1 mouse_genomes_project 1 126969609 126969713 + Gm25322 snRNA snRNA MGP_C57BL6NJ_T0022724.1 MGP_C57BL6NJ_G0016920.1 mouse_genomes_project 1 143895377 143907539 + MGP_C57BL6NJ_P0022724 Ptpn7 protein_coding protein_coding MGP_C57BL6NJ_T0022725.1 MGP_C57BL6NJ_G0016920.1 mouse_genomes_project 1 143895402 143908818 + MGP_C57BL6NJ_P0022725 Ptpn7 protein_coding protein_coding MGP_C57BL6NJ_T0022726.1 MGP_C57BL6NJ_G0016920.1 mouse_genomes_project 1 143895985 143902666 + Ptpn7 protein_coding retained_intron MGP_C57BL6NJ_T0022727.1 MGP_C57BL6NJ_G0016920.1 mouse_genomes_project 1 143895986 143908425 + MGP_C57BL6NJ_P0022727 Ptpn7 protein_coding protein_coding MGP_C57BL6NJ_T0000555.1 MGP_C57BL6NJ_G0000472.1 mouse_genomes_project 1 27835274 27836788 + TEC TEC MGP_C57BL6NJ_T0023473.1 MGP_C57BL6NJ_G0017060.1 mouse_genomes_project 1 172932190 172936440 + MGP_C57BL6NJ_P0023473 Pigc protein_coding protein_coding MGP_C57BL6NJ_T0023474.1 MGP_C57BL6NJ_G0017060.1 mouse_genomes_project 1 172932192 172935335 + MGP_C57BL6NJ_P0023474 Pigc protein_coding protein_coding MGP_C57BL6NJ_T0023475.1 MGP_C57BL6NJ_G0017060.1 mouse_genomes_project 1 172932232 172936439 + MGP_C57BL6NJ_P0023475 Pigc protein_coding protein_coding MGP_C57BL6NJ_T0023476.1 MGP_C57BL6NJ_G0017060.1 mouse_genomes_project 1 172932303 172933877 + MGP_C57BL6NJ_P0023476 Pigc protein_coding protein_coding MGP_C57BL6NJ_T0023477.1 MGP_C57BL6NJ_G0017060.1 mouse_genomes_project 1 172932306 172933536 + MGP_C57BL6NJ_P0023477 Pigc protein_coding protein_coding MGP_C57BL6NJ_T0005960.1 MGP_C57BL6NJ_G0004995.1 mouse_genomes_project 1 81667708 81697829 - Gm28387 lincRNA lincRNA MGP_C57BL6NJ_T0003029.1 MGP_C57BL6NJ_G0002845.1 mouse_genomes_project 1 139689848 139690895 + Gm28914 antisense antisense MGP_C57BL6NJ_T0012480.1 MGP_C57BL6NJ_G0010525.1 mouse_genomes_project 1 115076571 115076749 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002916.1 MGP_C57BL6NJ_G0002760.1 mouse_genomes_project 1 19776476 19796659 - Gm28836 antisense antisense MGP_C57BL6NJ_T0009689.1 MGP_C57BL6NJ_G0007774.1 mouse_genomes_project 1 77327256 77327355 - Mir6351 miRNA miRNA MGP_C57BL6NJ_T0012232.1 MGP_C57BL6NJ_G0010277.1 mouse_genomes_project 1 31374733 31375568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012162.1 MGP_C57BL6NJ_G0010207.1 mouse_genomes_project 1 6980085 6980721 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012146.1 MGP_C57BL6NJ_G0010191.1 mouse_genomes_project 1 4343559 4343884 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102678.1 MGP_C57BL6NJ_G0040473.1 mouse_genomes_project 1 125355046 125355888 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017459.1 MGP_C57BL6NJ_G0015491.1 mouse_genomes_project 1 53759978 53836923 + Gm28177 processed_transcript processed_transcript MGP_C57BL6NJ_T0012154.1 MGP_C57BL6NJ_G0010199.1 mouse_genomes_project 1 5082961 5083842 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005956.1 MGP_C57BL6NJ_G0004992.1 mouse_genomes_project 1 80087613 80101759 + Gm17751 lincRNA lincRNA MGP_C57BL6NJ_T0005957.1 MGP_C57BL6NJ_G0004992.1 mouse_genomes_project 1 80087613 80101175 + Gm17751 lincRNA lincRNA MGP_C57BL6NJ_T0012461.1 MGP_C57BL6NJ_G0010506.1 mouse_genomes_project 1 107867803 107868039 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005846.1 MGP_C57BL6NJ_G0004917.1 mouse_genomes_project 1 36434522 36435235 + 4930403P22Rik lincRNA lincRNA MGP_C57BL6NJ_T0024415.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194487137 194515085 - MGP_C57BL6NJ_P0024415 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0024416.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194487158 194492340 - Lbr protein_coding retained_intron MGP_C57BL6NJ_T0024417.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194491677 194500548 - MGP_C57BL6NJ_P0024417 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0024418.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194493354 194500816 - Lbr protein_coding retained_intron MGP_C57BL6NJ_T0024419.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194508837 194515752 - MGP_C57BL6NJ_P0024419 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0024420.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194508866 194515067 - MGP_C57BL6NJ_P0024420 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0024421.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194509017 194515565 - MGP_C57BL6NJ_P0024421 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0024422.1 MGP_C57BL6NJ_G0017288.1 mouse_genomes_project 1 194511258 194515032 - MGP_C57BL6NJ_P0024422 Lbr protein_coding protein_coding MGP_C57BL6NJ_T0099293.1 MGP_C57BL6NJ_G0037357.1 mouse_genomes_project 1 72709585 72711458 - Gm28112 sense_intronic sense_intronic MGP_C57BL6NJ_T0024606.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202380480 202524751 - MGP_C57BL6NJ_P0024606 Kcnk2 protein_coding protein_coding MGP_C57BL6NJ_T0024607.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202380485 202525855 - MGP_C57BL6NJ_P0024607 Kcnk2 protein_coding protein_coding MGP_C57BL6NJ_T0024608.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202380492 202584947 - MGP_C57BL6NJ_P0024608 Kcnk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024609.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202382308 202584887 - MGP_C57BL6NJ_P0024609 Kcnk2 protein_coding protein_coding MGP_C57BL6NJ_T0024610.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202382580 202387760 - Kcnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0024611.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202382617 202416446 - Kcnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0024612.1 MGP_C57BL6NJ_G0017327.1 mouse_genomes_project 1 202519743 202528644 - Kcnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0012410.1 MGP_C57BL6NJ_G0010455.1 mouse_genomes_project 1 87444855 87445696 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012377.1 MGP_C57BL6NJ_G0010422.1 mouse_genomes_project 1 74203770 74204149 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012166.1 MGP_C57BL6NJ_G0010211.1 mouse_genomes_project 1 7111760 7112877 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012255.1 MGP_C57BL6NJ_G0010300.1 mouse_genomes_project 1 34928989 34929425 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099591.1 MGP_C57BL6NJ_G0037637.1 mouse_genomes_project 1 59652063 59652220 + Gm24014 snRNA snRNA MGP_C57BL6NJ_T0019521.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 19990968 20618153 - MGP_C57BL6NJ_P0019521 Kcnq5 protein_coding protein_coding MGP_C57BL6NJ_T0019522.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 19990973 20618514 - MGP_C57BL6NJ_P0019522 Kcnq5 protein_coding protein_coding MGP_C57BL6NJ_T0019523.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 19994727 20618153 - MGP_C57BL6NJ_P0019523 Kcnq5 protein_coding protein_coding MGP_C57BL6NJ_T0019524.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 19994727 20618153 - MGP_C57BL6NJ_P0019524 Kcnq5 protein_coding protein_coding MGP_C57BL6NJ_T0019525.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 19994727 20618153 - MGP_C57BL6NJ_P0019525 Kcnq5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019526.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 20080216 20618237 - Kcnq5 protein_coding retained_intron MGP_C57BL6NJ_T0019527.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 20123445 20229992 - MGP_C57BL6NJ_P0019527 Kcnq5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019528.1 MGP_C57BL6NJ_G0016272.1 mouse_genomes_project 1 20209266 20502602 - Kcnq5 protein_coding processed_transcript MGP_C57BL6NJ_T0022179.1 MGP_C57BL6NJ_G0016798.1 mouse_genomes_project 1 126840437 126848831 - MGP_C57BL6NJ_P0022179 Inhbb protein_coding protein_coding MGP_C57BL6NJ_T0012446.1 MGP_C57BL6NJ_G0010491.1 mouse_genomes_project 1 102655780 102656744 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003025.1 MGP_C57BL6NJ_G0002843.1 mouse_genomes_project 1 139123163 139124329 - Gm28857 antisense antisense MGP_C57BL6NJ_T0000915.1 MGP_C57BL6NJ_G0000827.1 mouse_genomes_project 1 199678616 199680497 - TEC TEC MGP_C57BL6NJ_T0023188.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165576103 165626836 + MGP_C57BL6NJ_P0023188 Stx6 protein_coding protein_coding MGP_C57BL6NJ_T0023189.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165576107 165623121 + MGP_C57BL6NJ_P0023189 Stx6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023190.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165576136 165619432 + MGP_C57BL6NJ_P0023190 Stx6 protein_coding protein_coding MGP_C57BL6NJ_T0023191.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165576159 165612694 + Stx6 protein_coding processed_transcript MGP_C57BL6NJ_T0023192.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165576187 165599312 + Stx6 protein_coding retained_intron MGP_C57BL6NJ_T0023193.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165605495 165609522 + Stx6 protein_coding retained_intron MGP_C57BL6NJ_T0023194.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165608565 165623199 + Stx6 protein_coding retained_intron MGP_C57BL6NJ_T0023195.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165609009 165614935 + Stx6 protein_coding retained_intron MGP_C57BL6NJ_T0023196.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165612675 165629397 + MGP_C57BL6NJ_P0023196 Stx6 protein_coding protein_coding MGP_C57BL6NJ_T0023197.1 MGP_C57BL6NJ_G0017014.1 mouse_genomes_project 1 165616193 165623424 + Stx6 protein_coding processed_transcript MGP_C57BL6NJ_T0021416.1 MGP_C57BL6NJ_G0016621.1 mouse_genomes_project 1 89255245 89294752 - MGP_C57BL6NJ_P0021416 Slc16a14 protein_coding protein_coding MGP_C57BL6NJ_T0021417.1 MGP_C57BL6NJ_G0016621.1 mouse_genomes_project 1 89284906 89294475 - MGP_C57BL6NJ_P0021417 Slc16a14 protein_coding protein_coding MGP_C57BL6NJ_T0012124.1 MGP_C57BL6NJ_G0010169.1 mouse_genomes_project 1 278552 279032 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021935.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98875563 98892643 - MGP_C57BL6NJ_P0021935 Stk25 protein_coding protein_coding MGP_C57BL6NJ_T0021936.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98877714 98892550 - Stk25 protein_coding retained_intron MGP_C57BL6NJ_T0021937.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98878165 98881168 - Stk25 protein_coding retained_intron MGP_C57BL6NJ_T0021938.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98879202 98881595 - Stk25 protein_coding retained_intron MGP_C57BL6NJ_T0021939.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98881656 98892400 - MGP_C57BL6NJ_P0021939 Stk25 protein_coding protein_coding MGP_C57BL6NJ_T0021940.1 MGP_C57BL6NJ_G0016741.1 mouse_genomes_project 1 98882946 98917547 - MGP_C57BL6NJ_P0021940 Stk25 protein_coding protein_coding MGP_C57BL6NJ_T0003146.1 MGP_C57BL6NJ_G0002934.1 mouse_genomes_project 1 205425798 205430313 - Gm26670 antisense antisense MGP_C57BL6NJ_T0098936.1 MGP_C57BL6NJ_G0037000.1 mouse_genomes_project 1 147925590 147925706 - n-R5s217 rRNA rRNA MGP_C57BL6NJ_T0099571.1 MGP_C57BL6NJ_G0037617.1 mouse_genomes_project 1 7427450 7427555 - Gm22607 snRNA snRNA MGP_C57BL6NJ_T0020919.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77780347 77782872 + MGP_C57BL6NJ_P0020919 Pnkd protein_coding protein_coding MGP_C57BL6NJ_T0020920.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77780462 77859402 + MGP_C57BL6NJ_P0020920 Pnkd protein_coding protein_coding MGP_C57BL6NJ_T0020921.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77780467 77782052 + Pnkd protein_coding retained_intron MGP_C57BL6NJ_T0020922.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77780471 77853340 + Pnkd protein_coding retained_intron MGP_C57BL6NJ_T0020923.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77780472 77859412 + MGP_C57BL6NJ_P0020923 Pnkd protein_coding protein_coding MGP_C57BL6NJ_T0020924.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77781194 77782691 + Pnkd protein_coding retained_intron MGP_C57BL6NJ_T0020933.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77836519 77859404 + MGP_C57BL6NJ_P0020933 Pnkd protein_coding protein_coding MGP_C57BL6NJ_T0020934.1 MGP_C57BL6NJ_G0016537.1 mouse_genomes_project 1 77836572 77840171 + Pnkd protein_coding retained_intron MGP_C57BL6NJ_T0022572.1 MGP_C57BL6NJ_G0016884.1 mouse_genomes_project 1 141722029 141732441 + MGP_C57BL6NJ_P0022572 Ppp1r15b protein_coding protein_coding MGP_C57BL6NJ_T0022573.1 MGP_C57BL6NJ_G0016884.1 mouse_genomes_project 1 141722230 141732441 + Ppp1r15b protein_coding processed_transcript MGP_C57BL6NJ_T0012652.1 MGP_C57BL6NJ_G0010697.1 mouse_genomes_project 1 194766151 194766568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020314.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120165 57145220 + MGP_C57BL6NJ_P0020314 Mob4 protein_coding protein_coding MGP_C57BL6NJ_T0020315.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120165 57148086 + MGP_C57BL6NJ_P0020315 Mob4 protein_coding protein_coding MGP_C57BL6NJ_T0020316.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120194 57148085 + Mob4 protein_coding retained_intron MGP_C57BL6NJ_T0020317.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120216 57144281 + MGP_C57BL6NJ_P0020317 Mob4 protein_coding protein_coding MGP_C57BL6NJ_T0020318.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120221 57144641 + MGP_C57BL6NJ_P0020318 Mob4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020319.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120254 57144065 + MGP_C57BL6NJ_P0020319 Mob4 protein_coding protein_coding MGP_C57BL6NJ_T0020320.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57120260 57135149 + Mob4 protein_coding retained_intron MGP_C57BL6NJ_T0020321.1 MGP_C57BL6NJ_G0016423.1 mouse_genomes_project 1 57137393 57138281 + Mob4 protein_coding retained_intron MGP_C57BL6NJ_T0021645.1 MGP_C57BL6NJ_G0016671.1 mouse_genomes_project 1 92818566 92996661 + MGP_C57BL6NJ_P0021645 Ugt1a8 protein_coding protein_coding MGP_C57BL6NJ_T0024531.1 MGP_C57BL6NJ_G0017312.1 mouse_genomes_project 1 197718857 197823155 - MGP_C57BL6NJ_P0024531 Mark1 protein_coding protein_coding MGP_C57BL6NJ_T0024532.1 MGP_C57BL6NJ_G0017312.1 mouse_genomes_project 1 197741585 197823060 - MGP_C57BL6NJ_P0024532 Mark1 protein_coding protein_coding MGP_C57BL6NJ_T0012179.1 MGP_C57BL6NJ_G0010224.1 mouse_genomes_project 1 11683433 11687806 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012175.1 MGP_C57BL6NJ_G0010220.1 mouse_genomes_project 1 9865387 9866383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020862.1 MGP_C57BL6NJ_G0016522.1 mouse_genomes_project 1 75627663 75719699 + MGP_C57BL6NJ_P0020862 Xrcc5 protein_coding protein_coding MGP_C57BL6NJ_T0020863.1 MGP_C57BL6NJ_G0016522.1 mouse_genomes_project 1 75627740 75719694 + MGP_C57BL6NJ_P0020863 Xrcc5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022774.1 MGP_C57BL6NJ_G0016930.1 mouse_genomes_project 1 144529820 144564524 + MGP_C57BL6NJ_P0022774 Csrp1 protein_coding protein_coding MGP_C57BL6NJ_T0022775.1 MGP_C57BL6NJ_G0016930.1 mouse_genomes_project 1 144538869 144564524 + MGP_C57BL6NJ_P0022775 Csrp1 protein_coding protein_coding MGP_C57BL6NJ_T0012180.1 MGP_C57BL6NJ_G0010225.1 mouse_genomes_project 1 13805787 13807133 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020536.1 MGP_C57BL6NJ_G0016462.1 mouse_genomes_project 1 62281938 62352512 + MGP_C57BL6NJ_P0020536 Fam117b protein_coding protein_coding MGP_C57BL6NJ_T0020537.1 MGP_C57BL6NJ_G0016462.1 mouse_genomes_project 1 62337817 62348681 + MGP_C57BL6NJ_P0020537 Fam117b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0020538.1 MGP_C57BL6NJ_G0016462.1 mouse_genomes_project 1 62346346 62348104 + Fam117b protein_coding retained_intron MGP_C57BL6NJ_T0000750.1 MGP_C57BL6NJ_G0000666.1 mouse_genomes_project 1 137984190 137986877 + TEC TEC MGP_C57BL6NJ_T0009701.1 MGP_C57BL6NJ_G0007786.1 mouse_genomes_project 1 90264590 90264717 + Mir8096 miRNA miRNA MGP_C57BL6NJ_T0000791.1 MGP_C57BL6NJ_G0000705.1 mouse_genomes_project 1 148089530 148092327 + TEC TEC MGP_C57BL6NJ_T0023807.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182516066 182528877 - MGP_C57BL6NJ_P0023807 Fcrla protein_coding protein_coding MGP_C57BL6NJ_T0023808.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182516365 182522752 - MGP_C57BL6NJ_P0023808 Fcrla protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023809.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182516371 182528877 - MGP_C57BL6NJ_P0023809 Fcrla protein_coding protein_coding MGP_C57BL6NJ_T0023810.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182521277 182528849 - MGP_C57BL6NJ_P0023810 Fcrla protein_coding protein_coding MGP_C57BL6NJ_T0023811.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182521979 182528854 - MGP_C57BL6NJ_P0023811 Fcrla protein_coding protein_coding MGP_C57BL6NJ_T0023812.1 MGP_C57BL6NJ_G0017139.1 mouse_genomes_project 1 182521999 182528828 - Fcrla protein_coding processed_transcript MGP_C57BL6NJ_T0012592.1 MGP_C57BL6NJ_G0010637.1 mouse_genomes_project 1 165601153 165601741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009697.1 MGP_C57BL6NJ_G0007782.1 mouse_genomes_project 1 86242942 86243046 + Mir6344 miRNA miRNA MGP_C57BL6NJ_T0024083.1 MGP_C57BL6NJ_G0017198.1 mouse_genomes_project 1 184503507 184505415 + MGP_C57BL6NJ_P0024083 Crp protein_coding protein_coding MGP_C57BL6NJ_T0024084.1 MGP_C57BL6NJ_G0017198.1 mouse_genomes_project 1 184503508 184648850 + Crp protein_coding processed_transcript MGP_C57BL6NJ_T0024139.1 MGP_C57BL6NJ_G0017222.1 mouse_genomes_project 1 186160668 186166308 + MGP_C57BL6NJ_P0024139 Olfr429 protein_coding protein_coding MGP_C57BL6NJ_T0024140.1 MGP_C57BL6NJ_G0017222.1 mouse_genomes_project 1 186165365 186166308 + MGP_C57BL6NJ_P0024140 Olfr429 protein_coding protein_coding MGP_C57BL6NJ_T0102686.1 MGP_C57BL6NJ_G0040481.1 mouse_genomes_project 1 181345240 181345444 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000771.1 MGP_C57BL6NJ_G0000686.1 mouse_genomes_project 1 144280034 144281057 - TEC TEC MGP_C57BL6NJ_T0000824.1 MGP_C57BL6NJ_G0000738.1 mouse_genomes_project 1 166931343 166933906 + TEC TEC MGP_C57BL6NJ_T0100912.1 MGP_C57BL6NJ_G0038958.1 mouse_genomes_project 1 149196205 149196347 + Gm26048 snoRNA snoRNA MGP_C57BL6NJ_T0005832.1 MGP_C57BL6NJ_G0004905.1 mouse_genomes_project 1 30600403 30601940 + Gm28644 lincRNA lincRNA MGP_C57BL6NJ_T0022292.1 MGP_C57BL6NJ_G0016824.1 mouse_genomes_project 1 135610258 135816515 - MGP_C57BL6NJ_P0022292 Tmem163 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022293.1 MGP_C57BL6NJ_G0016824.1 mouse_genomes_project 1 135610270 135816440 - MGP_C57BL6NJ_P0022293 Tmem163 protein_coding protein_coding MGP_C57BL6NJ_T0022294.1 MGP_C57BL6NJ_G0016824.1 mouse_genomes_project 1 135614610 135817965 - MGP_C57BL6NJ_P0022294 Tmem163 protein_coding protein_coding MGP_C57BL6NJ_T0022295.1 MGP_C57BL6NJ_G0016824.1 mouse_genomes_project 1 135615073 135628476 - Tmem163 protein_coding retained_intron MGP_C57BL6NJ_T0022296.1 MGP_C57BL6NJ_G0016824.1 mouse_genomes_project 1 135615257 135675040 - Tmem163 protein_coding processed_transcript MGP_C57BL6NJ_T0006074.1 MGP_C57BL6NJ_G0005091.1 mouse_genomes_project 1 145426599 145429139 - Gm33994 lincRNA lincRNA MGP_C57BL6NJ_T0012667.1 MGP_C57BL6NJ_G0010712.1 mouse_genomes_project 1 204785525 204786107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020493.1 MGP_C57BL6NJ_G0016455.1 mouse_genomes_project 1 61448492 61536759 - MGP_C57BL6NJ_P0020493 Als2 protein_coding protein_coding MGP_C57BL6NJ_T0020494.1 MGP_C57BL6NJ_G0016455.1 mouse_genomes_project 1 61449624 61536621 - MGP_C57BL6NJ_P0020494 Als2 protein_coding protein_coding MGP_C57BL6NJ_T0020495.1 MGP_C57BL6NJ_G0016455.1 mouse_genomes_project 1 61477898 61536759 - Als2 protein_coding retained_intron MGP_C57BL6NJ_T0020496.1 MGP_C57BL6NJ_G0016455.1 mouse_genomes_project 1 61508529 61536754 - MGP_C57BL6NJ_P0020496 Als2 protein_coding protein_coding MGP_C57BL6NJ_T0020497.1 MGP_C57BL6NJ_G0016455.1 mouse_genomes_project 1 61509222 61512005 - Als2 protein_coding retained_intron MGP_C57BL6NJ_T0023415.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171900239 171932436 - MGP_C57BL6NJ_P0023415 Zbtb37 protein_coding protein_coding MGP_C57BL6NJ_T0023416.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171906111 171932436 - MGP_C57BL6NJ_P0023416 Zbtb37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023417.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171906117 171932421 - MGP_C57BL6NJ_P0023417 Zbtb37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023418.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171915073 171931846 - MGP_C57BL6NJ_P0023418 Zbtb37 protein_coding protein_coding MGP_C57BL6NJ_T0023419.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171916576 171932435 - MGP_C57BL6NJ_P0023419 Zbtb37 protein_coding protein_coding MGP_C57BL6NJ_T0023420.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171916740 171931871 - MGP_C57BL6NJ_P0023420 Zbtb37 protein_coding protein_coding MGP_C57BL6NJ_T0023421.1 MGP_C57BL6NJ_G0017049.1 mouse_genomes_project 1 171930024 171932403 - MGP_C57BL6NJ_P0023421 Zbtb37 protein_coding protein_coding MGP_C57BL6NJ_T0020864.1 MGP_C57BL6NJ_G0016523.1 mouse_genomes_project 1 75755237 75874247 - MGP_C57BL6NJ_P0020864 March4 protein_coding protein_coding MGP_C57BL6NJ_T0003069.1 MGP_C57BL6NJ_G0002877.1 mouse_genomes_project 1 170727514 170730851 - Gm38039 antisense antisense MGP_C57BL6NJ_T0021450.1 MGP_C57BL6NJ_G0016631.1 mouse_genomes_project 1 90481331 90484603 + MGP_C57BL6NJ_P0021450 4933407L21Rik protein_coding protein_coding MGP_C57BL6NJ_T0021451.1 MGP_C57BL6NJ_G0016631.1 mouse_genomes_project 1 90481575 90493662 + MGP_C57BL6NJ_P0021451 4933407L21Rik protein_coding protein_coding MGP_C57BL6NJ_T0021452.1 MGP_C57BL6NJ_G0016631.1 mouse_genomes_project 1 90481734 90484603 + 4933407L21Rik protein_coding retained_intron MGP_C57BL6NJ_T0017445.1 MGP_C57BL6NJ_G0015484.1 mouse_genomes_project 1 34349232 34356590 - processed_transcript retained_intron MGP_C57BL6NJ_T0017446.1 MGP_C57BL6NJ_G0015484.1 mouse_genomes_project 1 34356310 34359557 - processed_transcript antisense MGP_C57BL6NJ_T0017447.1 MGP_C57BL6NJ_G0015484.1 mouse_genomes_project 1 34357930 34359521 - processed_transcript antisense MGP_C57BL6NJ_T0006013.1 MGP_C57BL6NJ_G0005041.1 mouse_genomes_project 1 103904502 103921743 + Gm29461 lincRNA lincRNA MGP_C57BL6NJ_T0000492.1 MGP_C57BL6NJ_G0000411.1 mouse_genomes_project 1 3058277 3060076 - TEC TEC MGP_C57BL6NJ_T0012241.1 MGP_C57BL6NJ_G0010286.1 mouse_genomes_project 1 33686290 33688791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024400.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193765038 193803522 - MGP_C57BL6NJ_P0024400 Wdr26 protein_coding protein_coding MGP_C57BL6NJ_T0024401.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193765042 193803407 - MGP_C57BL6NJ_P0024401 Wdr26 protein_coding protein_coding MGP_C57BL6NJ_T0024402.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193768907 193803396 - MGP_C57BL6NJ_P0024402 Wdr26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024403.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193769485 193776077 - MGP_C57BL6NJ_P0024403 Wdr26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024404.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193772217 193775550 - MGP_C57BL6NJ_P0024404 Wdr26 protein_coding protein_coding MGP_C57BL6NJ_T0024405.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193774117 193776207 - Wdr26 protein_coding processed_transcript MGP_C57BL6NJ_T0024406.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193779257 193783817 - Wdr26 protein_coding retained_intron MGP_C57BL6NJ_T0024407.1 MGP_C57BL6NJ_G0017284.1 mouse_genomes_project 1 193790310 193794732 - Wdr26 protein_coding retained_intron MGP_C57BL6NJ_T0000913.1 MGP_C57BL6NJ_G0000825.1 mouse_genomes_project 1 199101629 199102117 + TEC TEC MGP_C57BL6NJ_T0012197.1 MGP_C57BL6NJ_G0010242.1 mouse_genomes_project 1 17721488 17723734 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102376.1 MGP_C57BL6NJ_G0040314.1 mouse_genomes_project 1 16301950 16325988 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102377.1 MGP_C57BL6NJ_G0040314.1 mouse_genomes_project 1 16315218 16325467 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0012319.1 MGP_C57BL6NJ_G0010364.1 mouse_genomes_project 1 57044480 57045286 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023308.1 MGP_C57BL6NJ_G0017032.1 mouse_genomes_project 1 167364270 167398920 + MGP_C57BL6NJ_P0023308 Angptl1 protein_coding protein_coding MGP_C57BL6NJ_T0023309.1 MGP_C57BL6NJ_G0017032.1 mouse_genomes_project 1 167364650 167371324 + MGP_C57BL6NJ_P0023309 Angptl1 protein_coding protein_coding MGP_C57BL6NJ_T0012405.1 MGP_C57BL6NJ_G0010450.1 mouse_genomes_project 1 86971344 86971735 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099595.1 MGP_C57BL6NJ_G0037641.1 mouse_genomes_project 1 66203843 66203946 - Gm22281 snRNA snRNA MGP_C57BL6NJ_T0020964.1 MGP_C57BL6NJ_G0016544.1 mouse_genomes_project 1 78032651 78058531 + MGP_C57BL6NJ_P0020964 Cnot9 protein_coding protein_coding MGP_C57BL6NJ_T0020965.1 MGP_C57BL6NJ_G0016544.1 mouse_genomes_project 1 78032653 78054780 + Cnot9 protein_coding processed_transcript MGP_C57BL6NJ_T0020966.1 MGP_C57BL6NJ_G0016544.1 mouse_genomes_project 1 78051219 78055866 + Cnot9 protein_coding retained_intron MGP_C57BL6NJ_T0024548.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198224247 198276605 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0024549.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198224247 198299488 + MGP_C57BL6NJ_P0024549 Eprs protein_coding protein_coding MGP_C57BL6NJ_T0024550.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198224261 198228173 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0024551.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198224335 198238064 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0024552.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198224387 198242931 + MGP_C57BL6NJ_P0024552 Eprs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024553.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198226674 198234530 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0024554.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198228793 198239983 + MGP_C57BL6NJ_P0024554 Eprs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024555.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198228800 198235550 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0024556.1 MGP_C57BL6NJ_G0017316.1 mouse_genomes_project 1 198263119 198269945 + Eprs protein_coding retained_intron MGP_C57BL6NJ_T0099540.1 MGP_C57BL6NJ_G0037591.1 mouse_genomes_project 1 21766500 21973809 - Gm29506 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0024625.1 MGP_C57BL6NJ_G0017330.1 mouse_genomes_project 1 203098692 203143989 - MGP_C57BL6NJ_P0024625 Smyd2 protein_coding protein_coding MGP_C57BL6NJ_T0024626.1 MGP_C57BL6NJ_G0017330.1 mouse_genomes_project 1 203098694 203107203 - Smyd2 protein_coding processed_transcript MGP_C57BL6NJ_T0024627.1 MGP_C57BL6NJ_G0017330.1 mouse_genomes_project 1 203098842 203100573 - Smyd2 protein_coding retained_intron MGP_C57BL6NJ_T0024628.1 MGP_C57BL6NJ_G0017330.1 mouse_genomes_project 1 203103246 203143879 - Smyd2 protein_coding retained_intron MGP_C57BL6NJ_T0022446.1 MGP_C57BL6NJ_G0016859.1 mouse_genomes_project 1 140055945 140069915 + MGP_C57BL6NJ_P0022446 Avpr1b protein_coding protein_coding MGP_C57BL6NJ_T0022447.1 MGP_C57BL6NJ_G0016859.1 mouse_genomes_project 1 140056429 140067669 + MGP_C57BL6NJ_P0022447 Avpr1b protein_coding protein_coding MGP_C57BL6NJ_T0020006.1 MGP_C57BL6NJ_G0016364.1 mouse_genomes_project 1 41283902 41335649 + MGP_C57BL6NJ_P0020006 Tmem182 protein_coding protein_coding MGP_C57BL6NJ_T0024152.1 MGP_C57BL6NJ_G0017233.1 mouse_genomes_project 1 186513089 186525220 + MGP_C57BL6NJ_P0024152 Olfr414 protein_coding protein_coding MGP_C57BL6NJ_T0024153.1 MGP_C57BL6NJ_G0017233.1 mouse_genomes_project 1 186524097 186525052 + MGP_C57BL6NJ_P0024153 Olfr414 protein_coding protein_coding MGP_C57BL6NJ_T0000880.1 MGP_C57BL6NJ_G0000794.1 mouse_genomes_project 1 188927399 188928818 - TEC TEC MGP_C57BL6NJ_T0019952.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267370 40400663 + MGP_C57BL6NJ_P0019952 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019953.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267370 40400663 + MGP_C57BL6NJ_P0019953 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019954.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267627 40268914 + Map4k4 protein_coding retained_intron MGP_C57BL6NJ_T0019955.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267627 40364452 + MGP_C57BL6NJ_P0019955 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019956.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267636 40399107 + MGP_C57BL6NJ_P0019956 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019957.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267636 40399107 + MGP_C57BL6NJ_P0019957 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019958.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267637 40399107 + MGP_C57BL6NJ_P0019958 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019959.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267681 40399322 + MGP_C57BL6NJ_P0019959 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019960.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40267687 40399278 + MGP_C57BL6NJ_P0019960 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019961.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40335622 40357327 + Map4k4 protein_coding processed_transcript MGP_C57BL6NJ_T0019962.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40336317 40350933 + Map4k4 protein_coding processed_transcript MGP_C57BL6NJ_T0019963.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40373947 40374914 + Map4k4 protein_coding retained_intron MGP_C57BL6NJ_T0019964.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40374245 40381095 + MGP_C57BL6NJ_P0019964 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019965.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40374246 40379263 + MGP_C57BL6NJ_P0019965 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019966.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40375029 40385010 + MGP_C57BL6NJ_P0019966 Map4k4 protein_coding protein_coding MGP_C57BL6NJ_T0019967.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40381745 40383682 + Map4k4 protein_coding retained_intron MGP_C57BL6NJ_T0019968.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40388204 40389051 + Map4k4 protein_coding retained_intron MGP_C57BL6NJ_T0019969.1 MGP_C57BL6NJ_G0016354.1 mouse_genomes_project 1 40397562 40398778 + Map4k4 protein_coding retained_intron MGP_C57BL6NJ_T0012366.1 MGP_C57BL6NJ_G0010411.1 mouse_genomes_project 1 68329819 68330593 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012498.1 MGP_C57BL6NJ_G0010543.1 mouse_genomes_project 1 120428081 120428817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000855.1 MGP_C57BL6NJ_G0000769.1 mouse_genomes_project 1 173466235 173468499 + TEC TEC MGP_C57BL6NJ_T0000631.1 MGP_C57BL6NJ_G0000547.1 mouse_genomes_project 1 69615347 69617924 - TEC TEC MGP_C57BL6NJ_T0024137.1 MGP_C57BL6NJ_G0017220.1 mouse_genomes_project 1 186125288 186126227 + MGP_C57BL6NJ_P0024137 Olfr432 protein_coding protein_coding MGP_C57BL6NJ_T0024366.1 MGP_C57BL6NJ_G0017273.1 mouse_genomes_project 1 193194753 193225328 + MGP_C57BL6NJ_P0024366 Acbd3 protein_coding protein_coding MGP_C57BL6NJ_T0024367.1 MGP_C57BL6NJ_G0017273.1 mouse_genomes_project 1 193198567 193203205 + Acbd3 protein_coding retained_intron MGP_C57BL6NJ_T0099617.1 MGP_C57BL6NJ_G0037663.1 mouse_genomes_project 1 114192646 114192753 - Gm24267 snRNA snRNA MGP_C57BL6NJ_T0005980.1 MGP_C57BL6NJ_G0005011.1 mouse_genomes_project 1 93335738 93360051 - Gm29538 lincRNA lincRNA MGP_C57BL6NJ_T0023806.1 MGP_C57BL6NJ_G0017138.1 mouse_genomes_project 1 182503404 182511432 - MGP_C57BL6NJ_P0023806 Fcrlb protein_coding protein_coding MGP_C57BL6NJ_T0012292.1 MGP_C57BL6NJ_G0010337.1 mouse_genomes_project 1 47500581 47501239 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012133.1 MGP_C57BL6NJ_G0010178.1 mouse_genomes_project 1 1899256 1900325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006209.1 MGP_C57BL6NJ_G0005193.1 mouse_genomes_project 1 201339262 201352355 + Gm38064 lincRNA lincRNA MGP_C57BL6NJ_T0005958.1 MGP_C57BL6NJ_G0004993.1 mouse_genomes_project 1 80535227 80681593 - Gm816 lincRNA lincRNA MGP_C57BL6NJ_T0023507.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173674033 173748601 - MGP_C57BL6NJ_P0023507 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023508.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173674035 173748632 - MGP_C57BL6NJ_P0023508 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023509.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173675093 173709202 - MGP_C57BL6NJ_P0023509 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023510.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173675096 173709628 - MGP_C57BL6NJ_P0023510 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023511.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173675793 173748557 - MGP_C57BL6NJ_P0023511 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023512.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173676306 173748626 - MGP_C57BL6NJ_P0023512 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023513.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173688159 173692620 - Prrc2c protein_coding retained_intron MGP_C57BL6NJ_T0023514.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173718442 173748480 - MGP_C57BL6NJ_P0023514 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023515.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173720877 173722092 - Prrc2c protein_coding retained_intron MGP_C57BL6NJ_T0023516.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173727967 173748573 - Prrc2c protein_coding retained_intron MGP_C57BL6NJ_T0023517.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173728620 173748426 - MGP_C57BL6NJ_P0023517 Prrc2c protein_coding protein_coding MGP_C57BL6NJ_T0023518.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173730980 173732944 - Prrc2c protein_coding retained_intron MGP_C57BL6NJ_T0023519.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173736692 173738797 - Prrc2c protein_coding retained_intron MGP_C57BL6NJ_T0023520.1 MGP_C57BL6NJ_G0017066.1 mouse_genomes_project 1 173738332 173748563 - Prrc2c protein_coding processed_transcript MGP_C57BL6NJ_T0022170.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126210417 126437378 - MGP_C57BL6NJ_P0022170 Gli2 protein_coding protein_coding MGP_C57BL6NJ_T0022171.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224745 126437098 - MGP_C57BL6NJ_P0022171 Gli2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022172.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224745 126437098 - MGP_C57BL6NJ_P0022172 Gli2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022173.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224745 126437098 - MGP_C57BL6NJ_P0022173 Gli2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022174.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224745 126437098 - MGP_C57BL6NJ_P0022174 Gli2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022175.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224745 126437098 - MGP_C57BL6NJ_P0022175 Gli2 protein_coding protein_coding MGP_C57BL6NJ_T0022176.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224747 126437098 - MGP_C57BL6NJ_P0022176 Gli2 protein_coding protein_coding MGP_C57BL6NJ_T0022177.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126224747 126437098 - MGP_C57BL6NJ_P0022177 Gli2 protein_coding protein_coding MGP_C57BL6NJ_T0022178.1 MGP_C57BL6NJ_G0016797.1 mouse_genomes_project 1 126245474 126362872 - Gli2 protein_coding processed_transcript MGP_C57BL6NJ_T0000807.1 MGP_C57BL6NJ_G0000721.1 mouse_genomes_project 1 159391396 159394628 - TEC TEC MGP_C57BL6NJ_T0012161.1 MGP_C57BL6NJ_G0010206.1 mouse_genomes_project 1 6936478 6938393 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102637.1 MGP_C57BL6NJ_G0040432.1 mouse_genomes_project 1 30304269 30306594 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0022212.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127579346 127586991 - MGP_C57BL6NJ_P0022212 Dbi protein_coding protein_coding MGP_C57BL6NJ_T0022213.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127579350 127587055 - MGP_C57BL6NJ_P0022213 Dbi protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022214.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127579429 127586208 - Dbi protein_coding processed_transcript MGP_C57BL6NJ_T0022215.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127579460 127586975 - MGP_C57BL6NJ_P0022215 Dbi protein_coding protein_coding MGP_C57BL6NJ_T0022216.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127582070 127587085 - Dbi protein_coding retained_intron MGP_C57BL6NJ_T0022217.1 MGP_C57BL6NJ_G0016807.1 mouse_genomes_project 1 127585789 127587052 - Dbi protein_coding retained_intron MGP_C57BL6NJ_T0012397.1 MGP_C57BL6NJ_G0010442.1 mouse_genomes_project 1 84030353 84030617 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012148.1 MGP_C57BL6NJ_G0010193.1 mouse_genomes_project 1 4381811 4383114 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009671.1 MGP_C57BL6NJ_G0007756.1 mouse_genomes_project 1 39499683 39499780 - Mir6349 miRNA miRNA MGP_C57BL6NJ_T0021169.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78896318 78954320 + MGP_C57BL6NJ_P0021169 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021170.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78903135 78909385 + MGP_C57BL6NJ_P0021170 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021171.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78903135 78925604 + MGP_C57BL6NJ_P0021171 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021172.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78903147 78904404 + Speg protein_coding retained_intron MGP_C57BL6NJ_T0021173.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78903159 78908935 + MGP_C57BL6NJ_P0021173 Speg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021174.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78904577 78905987 + Speg protein_coding processed_transcript MGP_C57BL6NJ_T0021175.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78905711 78908988 + Speg protein_coding retained_intron MGP_C57BL6NJ_T0021176.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78905839 78912963 + MGP_C57BL6NJ_P0021176 Speg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021177.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78906523 78910144 + Speg protein_coding processed_transcript MGP_C57BL6NJ_T0021178.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78906621 78954303 + MGP_C57BL6NJ_P0021178 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021179.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78921125 78925031 + MGP_C57BL6NJ_P0021179 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021180.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78921561 78925411 + MGP_C57BL6NJ_P0021180 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021181.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78921675 78925603 + MGP_C57BL6NJ_P0021181 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021182.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78922050 78925248 + MGP_C57BL6NJ_P0021182 Speg protein_coding protein_coding MGP_C57BL6NJ_T0021183.1 MGP_C57BL6NJ_G0016577.1 mouse_genomes_project 1 78945562 78949622 + Speg protein_coding retained_intron MGP_C57BL6NJ_T0021501.1 MGP_C57BL6NJ_G0016641.1 mouse_genomes_project 1 90982448 90984351 - MGP_C57BL6NJ_P0021501 Nmur1 protein_coding protein_coding MGP_C57BL6NJ_T0020030.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44175010 44268261 + MGP_C57BL6NJ_P0020030 Nck2 protein_coding protein_coding MGP_C57BL6NJ_T0020031.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44176182 44192622 + Nck2 protein_coding processed_transcript MGP_C57BL6NJ_T0020032.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44176182 44308520 + MGP_C57BL6NJ_P0020032 Nck2 protein_coding protein_coding MGP_C57BL6NJ_T0020033.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44187700 44192650 + Nck2 protein_coding processed_transcript MGP_C57BL6NJ_T0020034.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44267033 44288485 + MGP_C57BL6NJ_P0020034 Nck2 protein_coding protein_coding MGP_C57BL6NJ_T0020035.1 MGP_C57BL6NJ_G0016371.1 mouse_genomes_project 1 44268197 44303760 + MGP_C57BL6NJ_P0020035 Nck2 protein_coding protein_coding MGP_C57BL6NJ_T0022776.1 MGP_C57BL6NJ_G0016931.1 mouse_genomes_project 1 144578362 144581380 + MGP_C57BL6NJ_P0022776 Phlda3 protein_coding protein_coding MGP_C57BL6NJ_T0022777.1 MGP_C57BL6NJ_G0016931.1 mouse_genomes_project 1 144579377 144581166 + Phlda3 protein_coding processed_transcript MGP_C57BL6NJ_T0020646.1 MGP_C57BL6NJ_G0016479.1 mouse_genomes_project 1 65861406 65909433 + MGP_C57BL6NJ_P0020646 Zdbf2 protein_coding protein_coding MGP_C57BL6NJ_T0020647.1 MGP_C57BL6NJ_G0016479.1 mouse_genomes_project 1 65861410 65888364 + MGP_C57BL6NJ_P0020647 Zdbf2 protein_coding protein_coding MGP_C57BL6NJ_T0020648.1 MGP_C57BL6NJ_G0016479.1 mouse_genomes_project 1 65884078 65909432 + MGP_C57BL6NJ_P0020648 Zdbf2 protein_coding protein_coding MGP_C57BL6NJ_T0012137.1 MGP_C57BL6NJ_G0010182.1 mouse_genomes_project 1 2813045 2813439 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006112.1 MGP_C57BL6NJ_G0005120.1 mouse_genomes_project 1 165476419 165497676 - Gm9530 lincRNA lincRNA MGP_C57BL6NJ_T0023734.1 MGP_C57BL6NJ_G0017115.1 mouse_genomes_project 1 178703463 178725133 + MGP_C57BL6NJ_P0023734 Aldh9a1 protein_coding protein_coding MGP_C57BL6NJ_T0023735.1 MGP_C57BL6NJ_G0017115.1 mouse_genomes_project 1 178703708 178707928 + Aldh9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0023736.1 MGP_C57BL6NJ_G0017115.1 mouse_genomes_project 1 178703784 178709330 + Aldh9a1 protein_coding retained_intron MGP_C57BL6NJ_T0023737.1 MGP_C57BL6NJ_G0017115.1 mouse_genomes_project 1 178720778 178724248 + Aldh9a1 protein_coding retained_intron MGP_C57BL6NJ_T0006100.1 MGP_C57BL6NJ_G0005111.1 mouse_genomes_project 1 161913266 161919336 - 2810414N06Rik lincRNA lincRNA MGP_C57BL6NJ_T0000671.1 MGP_C57BL6NJ_G0000587.1 mouse_genomes_project 1 87674774 87675577 - TEC TEC MGP_C57BL6NJ_T0000930.1 MGP_C57BL6NJ_G0000841.1 mouse_genomes_project 1 206717516 206719738 - TEC TEC MGP_C57BL6NJ_T0000806.1 MGP_C57BL6NJ_G0000720.1 mouse_genomes_project 1 159370421 159371878 - TEC TEC MGP_C57BL6NJ_T0005895.1 MGP_C57BL6NJ_G0004947.1 mouse_genomes_project 1 58091144 58092370 + 1700003I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0005896.1 MGP_C57BL6NJ_G0004947.1 mouse_genomes_project 1 58091189 58092304 + 1700003I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0023246.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166530258 166563476 + MGP_C57BL6NJ_P0023246 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023247.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166530581 166548111 + MGP_C57BL6NJ_P0023247 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023248.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166530627 166554124 + MGP_C57BL6NJ_P0023248 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023249.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166530988 166548318 + MGP_C57BL6NJ_P0023249 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023250.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166535471 166546251 + Tor1aip2 protein_coding processed_transcript MGP_C57BL6NJ_T0023251.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166535471 166563476 + MGP_C57BL6NJ_P0023251 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023252.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166535498 166548318 + MGP_C57BL6NJ_P0023252 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023253.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166535498 166548318 + MGP_C57BL6NJ_P0023253 Tor1aip2 protein_coding protein_coding MGP_C57BL6NJ_T0023254.1 MGP_C57BL6NJ_G0017022.1 mouse_genomes_project 1 166557779 166559457 + Tor1aip2 protein_coding retained_intron MGP_C57BL6NJ_T0022074.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113085495 113119485 - MGP_C57BL6NJ_P0022074 Vps4b protein_coding protein_coding MGP_C57BL6NJ_T0022075.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113090854 113119546 - MGP_C57BL6NJ_P0022075 Vps4b protein_coding protein_coding MGP_C57BL6NJ_T0022076.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113099482 113104979 - Vps4b protein_coding retained_intron MGP_C57BL6NJ_T0022077.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113101625 113102809 - Vps4b protein_coding retained_intron MGP_C57BL6NJ_T0022078.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113107988 113112767 - Vps4b protein_coding processed_transcript MGP_C57BL6NJ_T0022079.1 MGP_C57BL6NJ_G0016772.1 mouse_genomes_project 1 113113917 113119395 - Vps4b protein_coding retained_intron MGP_C57BL6NJ_T0021985.1 MGP_C57BL6NJ_G0016752.1 mouse_genomes_project 1 99454896 99469089 - MGP_C57BL6NJ_P0021985 Pdcd1 protein_coding protein_coding MGP_C57BL6NJ_T0102135.1 MGP_C57BL6NJ_G0040173.1 mouse_genomes_project 1 184248606 184270336 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102136.1 MGP_C57BL6NJ_G0040173.1 mouse_genomes_project 1 184269400 184270254 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0000626.1 MGP_C57BL6NJ_G0000542.1 mouse_genomes_project 1 65357338 65359894 + TEC TEC MGP_C57BL6NJ_T0000809.1 MGP_C57BL6NJ_G0000723.1 mouse_genomes_project 1 160345222 160347131 + TEC TEC MGP_C57BL6NJ_T0009660.1 MGP_C57BL6NJ_G0007745.1 mouse_genomes_project 1 22030836 22030920 + Mir30c-2 miRNA miRNA MGP_C57BL6NJ_T0000749.1 MGP_C57BL6NJ_G0000665.1 mouse_genomes_project 1 137643849 137644808 + TEC TEC MGP_C57BL6NJ_T0005979.1 MGP_C57BL6NJ_G0005010.1 mouse_genomes_project 1 91818717 91822827 - Gm29374 lincRNA lincRNA MGP_C57BL6NJ_T0021776.1 MGP_C57BL6NJ_G0016705.1 mouse_genomes_project 1 96515903 96517643 - Hes6 protein_coding retained_intron MGP_C57BL6NJ_T0021777.1 MGP_C57BL6NJ_G0016705.1 mouse_genomes_project 1 96515903 96517629 - Hes6 protein_coding retained_intron MGP_C57BL6NJ_T0021778.1 MGP_C57BL6NJ_G0016705.1 mouse_genomes_project 1 96515903 96517643 - MGP_C57BL6NJ_P0021778 Hes6 protein_coding protein_coding MGP_C57BL6NJ_T0021779.1 MGP_C57BL6NJ_G0016705.1 mouse_genomes_project 1 96516707 96517629 - Hes6 protein_coding retained_intron MGP_C57BL6NJ_T0021780.1 MGP_C57BL6NJ_G0016705.1 mouse_genomes_project 1 96516768 96518459 - Hes6 protein_coding processed_transcript MGP_C57BL6NJ_T0002928.1 MGP_C57BL6NJ_G0002770.1 mouse_genomes_project 1 38097990 38105263 + Gm26805 antisense antisense MGP_C57BL6NJ_T0019566.1 MGP_C57BL6NJ_G0016281.1 mouse_genomes_project 1 23091222 23300296 - Col19a1 protein_coding processed_transcript MGP_C57BL6NJ_T0019567.1 MGP_C57BL6NJ_G0016281.1 mouse_genomes_project 1 23093319 23448780 - MGP_C57BL6NJ_P0019567 Col19a1 protein_coding protein_coding MGP_C57BL6NJ_T0019568.1 MGP_C57BL6NJ_G0016281.1 mouse_genomes_project 1 23111668 23448719 - MGP_C57BL6NJ_P0019568 Col19a1 protein_coding protein_coding MGP_C57BL6NJ_T0023614.1 MGP_C57BL6NJ_G0017092.1 mouse_genomes_project 1 176370382 176390487 - MGP_C57BL6NJ_P0023614 Sft2d2 protein_coding protein_coding MGP_C57BL6NJ_T0023615.1 MGP_C57BL6NJ_G0017092.1 mouse_genomes_project 1 176371916 176390370 - MGP_C57BL6NJ_P0023615 Sft2d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023616.1 MGP_C57BL6NJ_G0017092.1 mouse_genomes_project 1 176375283 176390366 - MGP_C57BL6NJ_P0023616 Sft2d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012267.1 MGP_C57BL6NJ_G0010312.1 mouse_genomes_project 1 42722347 42723392 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0020274.1 MGP_C57BL6NJ_G0016416.1 mouse_genomes_project 1 56316653 56355250 - MGP_C57BL6NJ_P0020274 Gtf3c3 protein_coding protein_coding MGP_C57BL6NJ_T0020275.1 MGP_C57BL6NJ_G0016416.1 mouse_genomes_project 1 56336473 56340379 - Gtf3c3 protein_coding retained_intron MGP_C57BL6NJ_T0020276.1 MGP_C57BL6NJ_G0016416.1 mouse_genomes_project 1 56343628 56345236 - Gtf3c3 protein_coding retained_intron MGP_C57BL6NJ_T0012419.1 MGP_C57BL6NJ_G0010464.1 mouse_genomes_project 1 92213715 92214772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003128.1 MGP_C57BL6NJ_G0002923.1 mouse_genomes_project 1 200652001 200688098 - Gm36388 antisense antisense MGP_C57BL6NJ_T0021963.1 MGP_C57BL6NJ_G0016745.1 mouse_genomes_project 1 99061409 99074761 - MGP_C57BL6NJ_P0021963 Dtymk protein_coding protein_coding MGP_C57BL6NJ_T0021964.1 MGP_C57BL6NJ_G0016745.1 mouse_genomes_project 1 99061557 99070646 - MGP_C57BL6NJ_P0021964 Dtymk protein_coding protein_coding MGP_C57BL6NJ_T0021965.1 MGP_C57BL6NJ_G0016745.1 mouse_genomes_project 1 99070024 99071006 - Dtymk protein_coding processed_transcript MGP_C57BL6NJ_T0021966.1 MGP_C57BL6NJ_G0016745.1 mouse_genomes_project 1 99072925 99074733 - MGP_C57BL6NJ_P0021966 Dtymk protein_coding protein_coding MGP_C57BL6NJ_T0012621.1 MGP_C57BL6NJ_G0010666.1 mouse_genomes_project 1 177702780 177702951 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023872.1 MGP_C57BL6NJ_G0017152.1 mouse_genomes_project 1 182917977 182928674 + MGP_C57BL6NJ_P0023872 Adamts4 protein_coding protein_coding MGP_C57BL6NJ_T0023873.1 MGP_C57BL6NJ_G0017152.1 mouse_genomes_project 1 182919672 182928674 + MGP_C57BL6NJ_P0023873 Adamts4 protein_coding protein_coding MGP_C57BL6NJ_T0000868.1 MGP_C57BL6NJ_G0000782.1 mouse_genomes_project 1 179765498 179767773 - TEC TEC MGP_C57BL6NJ_T0000552.1 MGP_C57BL6NJ_G0000469.1 mouse_genomes_project 1 24793917 24794934 - TEC TEC MGP_C57BL6NJ_T0017516.1 MGP_C57BL6NJ_G0015512.1 mouse_genomes_project 1 170384229 170458799 + Gm10530 processed_transcript sense_intronic MGP_C57BL6NJ_T0017517.1 MGP_C57BL6NJ_G0015512.1 mouse_genomes_project 1 170455584 170458799 + Gm10530 processed_transcript lincRNA MGP_C57BL6NJ_T0024316.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192603026 192631264 - MGP_C57BL6NJ_P0024316 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024317.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192603026 192633799 - MGP_C57BL6NJ_P0024317 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024318.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192604807 192633717 - MGP_C57BL6NJ_P0024318 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024319.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192604939 192616420 - MGP_C57BL6NJ_P0024319 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024320.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192605179 192633760 - MGP_C57BL6NJ_P0024320 Coq8a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024321.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192607911 192633740 - MGP_C57BL6NJ_P0024321 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024322.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192607918 192619886 - MGP_C57BL6NJ_P0024322 Coq8a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024323.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192608993 192616711 - Coq8a protein_coding retained_intron MGP_C57BL6NJ_T0024324.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616795 192633740 - MGP_C57BL6NJ_P0024324 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024325.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616860 192631262 - MGP_C57BL6NJ_P0024325 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024326.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616897 192633854 - MGP_C57BL6NJ_P0024326 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024327.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616924 192620589 - MGP_C57BL6NJ_P0024327 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024328.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616930 192633751 - MGP_C57BL6NJ_P0024328 Coq8a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024329.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616933 192631441 - MGP_C57BL6NJ_P0024329 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024330.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192616984 192633751 - MGP_C57BL6NJ_P0024330 Coq8a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024331.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192617036 192638402 - MGP_C57BL6NJ_P0024331 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0024332.1 MGP_C57BL6NJ_G0017266.1 mouse_genomes_project 1 192619961 192633681 - MGP_C57BL6NJ_P0024332 Coq8a protein_coding protein_coding MGP_C57BL6NJ_T0000497.1 MGP_C57BL6NJ_G0000416.1 mouse_genomes_project 1 6114191 6115345 - TEC TEC MGP_C57BL6NJ_T0009692.1 MGP_C57BL6NJ_G0007777.1 mouse_genomes_project 1 78115201 78115278 - Gm25035 miRNA miRNA MGP_C57BL6NJ_T0012534.1 MGP_C57BL6NJ_G0010579.1 mouse_genomes_project 1 136699741 136700329 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022129.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125589540 125610081 - MGP_C57BL6NJ_P0022129 Tsn protein_coding protein_coding MGP_C57BL6NJ_T0022130.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125594402 125608902 - Tsn protein_coding retained_intron MGP_C57BL6NJ_T0022131.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125595641 125608651 - Tsn protein_coding retained_intron MGP_C57BL6NJ_T0022132.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125601001 125610127 - Tsn protein_coding processed_transcript MGP_C57BL6NJ_T0022133.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125607371 125609901 - Tsn protein_coding retained_intron MGP_C57BL6NJ_T0022134.1 MGP_C57BL6NJ_G0016793.1 mouse_genomes_project 1 125609345 125612035 - Tsn protein_coding retained_intron MGP_C57BL6NJ_T0022033.1 MGP_C57BL6NJ_G0016763.1 mouse_genomes_project 1 111011493 111244471 + MGP_C57BL6NJ_P0022033 Cdh20 protein_coding protein_coding MGP_C57BL6NJ_T0020072.1 MGP_C57BL6NJ_G0016378.1 mouse_genomes_project 1 44882080 44894333 - MGP_C57BL6NJ_P0020072 Kdelc1 protein_coding protein_coding MGP_C57BL6NJ_T0020073.1 MGP_C57BL6NJ_G0016378.1 mouse_genomes_project 1 44882419 44894278 - Kdelc1 protein_coding retained_intron MGP_C57BL6NJ_T0020074.1 MGP_C57BL6NJ_G0016378.1 mouse_genomes_project 1 44882421 44894290 - MGP_C57BL6NJ_P0020074 Kdelc1 protein_coding protein_coding MGP_C57BL6NJ_T0020075.1 MGP_C57BL6NJ_G0016378.1 mouse_genomes_project 1 44887617 44894290 - Kdelc1 protein_coding retained_intron MGP_C57BL6NJ_T0020076.1 MGP_C57BL6NJ_G0016378.1 mouse_genomes_project 1 44890318 44894226 - MGP_C57BL6NJ_P0020076 Kdelc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012482.1 MGP_C57BL6NJ_G0010527.1 mouse_genomes_project 1 115507901 115509028 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002966.1 MGP_C57BL6NJ_G0002799.1 mouse_genomes_project 1 64986681 65029727 - Pard3bos3 antisense antisense MGP_C57BL6NJ_T0000541.1 MGP_C57BL6NJ_G0000458.1 mouse_genomes_project 1 24302238 24305493 - TEC TEC MGP_C57BL6NJ_T0024464.1 MGP_C57BL6NJ_G0017298.1 mouse_genomes_project 1 195516004 195609448 + MGP_C57BL6NJ_P0024464 Susd4 protein_coding protein_coding MGP_C57BL6NJ_T0024465.1 MGP_C57BL6NJ_G0017298.1 mouse_genomes_project 1 195516156 195648992 + MGP_C57BL6NJ_P0024465 Susd4 protein_coding protein_coding MGP_C57BL6NJ_T0024466.1 MGP_C57BL6NJ_G0017298.1 mouse_genomes_project 1 195516539 195588696 + MGP_C57BL6NJ_P0024466 Susd4 protein_coding protein_coding MGP_C57BL6NJ_T0024467.1 MGP_C57BL6NJ_G0017298.1 mouse_genomes_project 1 195516700 195588722 + MGP_C57BL6NJ_P0024467 Susd4 protein_coding protein_coding MGP_C57BL6NJ_T0024468.1 MGP_C57BL6NJ_G0017298.1 mouse_genomes_project 1 195517039 195650351 + MGP_C57BL6NJ_P0024468 Susd4 protein_coding protein_coding MGP_C57BL6NJ_T0012169.1 MGP_C57BL6NJ_G0010214.1 mouse_genomes_project 1 8178221 8179677 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009738.1 MGP_C57BL6NJ_G0007823.1 mouse_genomes_project 1 178644803 178644904 + Mir6347 miRNA miRNA MGP_C57BL6NJ_T0102681.1 MGP_C57BL6NJ_G0040476.1 mouse_genomes_project 1 143229644 143233790 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006046.1 MGP_C57BL6NJ_G0005067.1 mouse_genomes_project 1 128365809 128367146 + Gm29347 lincRNA lincRNA MGP_C57BL6NJ_T0020388.1 MGP_C57BL6NJ_G0016438.1 mouse_genomes_project 1 60418069 60480232 + MGP_C57BL6NJ_P0020388 Aox4 protein_coding protein_coding MGP_C57BL6NJ_T0020389.1 MGP_C57BL6NJ_G0016438.1 mouse_genomes_project 1 60418104 60472021 + Aox4 protein_coding processed_transcript MGP_C57BL6NJ_T0020390.1 MGP_C57BL6NJ_G0016438.1 mouse_genomes_project 1 60418123 60423083 + Aox4 protein_coding processed_transcript MGP_C57BL6NJ_T0020391.1 MGP_C57BL6NJ_G0016438.1 mouse_genomes_project 1 60418890 60421035 + Aox4 protein_coding retained_intron MGP_C57BL6NJ_T0020392.1 MGP_C57BL6NJ_G0016438.1 mouse_genomes_project 1 60448779 60453295 + Aox4 protein_coding retained_intron MGP_C57BL6NJ_T0000789.1 MGP_C57BL6NJ_G0000703.1 mouse_genomes_project 1 147609218 147612878 - TEC TEC MGP_C57BL6NJ_T0002930.1 MGP_C57BL6NJ_G0002772.1 mouse_genomes_project 1 38494429 38504599 + Gm16150 antisense antisense MGP_C57BL6NJ_T0002931.1 MGP_C57BL6NJ_G0002772.1 mouse_genomes_project 1 38498695 38505662 + Gm16150 antisense antisense MGP_C57BL6NJ_T0102643.1 MGP_C57BL6NJ_G0040438.1 mouse_genomes_project 1 68181226 68181498 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012353.1 MGP_C57BL6NJ_G0010398.1 mouse_genomes_project 1 65188998 65189875 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023821.1 MGP_C57BL6NJ_G0017142.1 mouse_genomes_project 1 182662752 182671247 - Fcgr3 protein_coding retained_intron MGP_C57BL6NJ_T0023822.1 MGP_C57BL6NJ_G0017142.1 mouse_genomes_project 1 182662753 182682706 - MGP_C57BL6NJ_P0023822 Fcgr3 protein_coding protein_coding MGP_C57BL6NJ_T0023823.1 MGP_C57BL6NJ_G0017142.1 mouse_genomes_project 1 182662773 182682706 - MGP_C57BL6NJ_P0023823 Fcgr3 protein_coding protein_coding MGP_C57BL6NJ_T0023824.1 MGP_C57BL6NJ_G0017142.1 mouse_genomes_project 1 182671020 182707677 - MGP_C57BL6NJ_P0023824 Fcgr3 protein_coding protein_coding MGP_C57BL6NJ_T0003151.1 MGP_C57BL6NJ_G0002938.1 mouse_genomes_project 1 206641362 206646468 + Gm15872 antisense antisense MGP_C57BL6NJ_T0006082.1 MGP_C57BL6NJ_G0005096.1 mouse_genomes_project 1 146908856 146912480 - Gm26979 lincRNA lincRNA MGP_C57BL6NJ_T0003023.1 MGP_C57BL6NJ_G0002841.1 mouse_genomes_project 1 138766836 138788214 + antisense antisense MGP_C57BL6NJ_T0023158.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164099746 164133674 - MGP_C57BL6NJ_P0023158 Rgsl1 protein_coding protein_coding MGP_C57BL6NJ_T0023159.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164099751 164173785 - MGP_C57BL6NJ_P0023159 Rgsl1 protein_coding protein_coding MGP_C57BL6NJ_T0023160.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164099757 164152053 - MGP_C57BL6NJ_P0023160 Rgsl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023161.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164102053 164111110 - Rgsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0023162.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164105508 164173777 - MGP_C57BL6NJ_P0023162 Rgsl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023163.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164112960 164146812 - Rgsl1 protein_coding retained_intron MGP_C57BL6NJ_T0023164.1 MGP_C57BL6NJ_G0017005.1 mouse_genomes_project 1 164123445 164139348 - Rgsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0012560.1 MGP_C57BL6NJ_G0010605.1 mouse_genomes_project 1 152053536 152053831 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002915.1 MGP_C57BL6NJ_G0002759.1 mouse_genomes_project 1 19579205 19580840 + Gm28287 antisense antisense MGP_C57BL6NJ_T0000651.1 MGP_C57BL6NJ_G0000567.1 mouse_genomes_project 1 78512677 78514267 + TEC TEC MGP_C57BL6NJ_T0006124.1 MGP_C57BL6NJ_G0005128.1 mouse_genomes_project 1 171705631 171706095 + Gm38060 lincRNA lincRNA MGP_C57BL6NJ_T0002999.1 MGP_C57BL6NJ_G0002824.1 mouse_genomes_project 1 97744364 97744740 - 1700054K02Rik antisense antisense MGP_C57BL6NJ_T0009757.1 MGP_C57BL6NJ_G0007842.1 mouse_genomes_project 1 208587233 208587314 + Mir29b-2 miRNA miRNA MGP_C57BL6NJ_T0022474.1 MGP_C57BL6NJ_G0016867.1 mouse_genomes_project 1 140458780 140478815 + MGP_C57BL6NJ_P0022474 Slc45a3 protein_coding protein_coding MGP_C57BL6NJ_T0022475.1 MGP_C57BL6NJ_G0016867.1 mouse_genomes_project 1 140466454 140478810 + MGP_C57BL6NJ_P0022475 Slc45a3 protein_coding protein_coding MGP_C57BL6NJ_T0022476.1 MGP_C57BL6NJ_G0016867.1 mouse_genomes_project 1 140472564 140473791 + MGP_C57BL6NJ_P0022476 Slc45a3 protein_coding protein_coding MGP_C57BL6NJ_T0022477.1 MGP_C57BL6NJ_G0016867.1 mouse_genomes_project 1 140474809 140477752 + Slc45a3 protein_coding processed_transcript MGP_C57BL6NJ_T0019879.1 MGP_C57BL6NJ_G0016336.1 mouse_genomes_project 1 38143339 38153745 - MGP_C57BL6NJ_P0019879 Lyg2 protein_coding protein_coding MGP_C57BL6NJ_T0006063.1 MGP_C57BL6NJ_G0005080.1 mouse_genomes_project 1 140788987 140797237 - Gm29630 lincRNA lincRNA MGP_C57BL6NJ_T0098925.1 MGP_C57BL6NJ_G0036989.1 mouse_genomes_project 1 77222336 77222462 + Gm25329 rRNA rRNA MGP_C57BL6NJ_T0006085.1 MGP_C57BL6NJ_G0005098.1 mouse_genomes_project 1 146957677 146961047 + A430106G13Rik lincRNA lincRNA MGP_C57BL6NJ_T0000923.1 MGP_C57BL6NJ_G0000835.1 mouse_genomes_project 1 203133185 203135806 - TEC TEC MGP_C57BL6NJ_T0003098.1 MGP_C57BL6NJ_G0002898.1 mouse_genomes_project 1 183347302 183348446 + Gm37787 antisense antisense MGP_C57BL6NJ_T0022091.1 MGP_C57BL6NJ_G0016777.1 mouse_genomes_project 1 113522257 113529146 - MGP_C57BL6NJ_P0022091 Serpinb3b protein_coding protein_coding MGP_C57BL6NJ_T0022092.1 MGP_C57BL6NJ_G0016777.1 mouse_genomes_project 1 113522278 113668431 - MGP_C57BL6NJ_P0022092 Serpinb3b protein_coding protein_coding MGP_C57BL6NJ_T0022574.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141844386 141905893 + MGP_C57BL6NJ_P0022574 Plekha6 protein_coding protein_coding MGP_C57BL6NJ_T0022575.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141854933 141905607 + MGP_C57BL6NJ_P0022575 Plekha6 protein_coding protein_coding MGP_C57BL6NJ_T0022576.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141856935 141903674 + MGP_C57BL6NJ_P0022576 Plekha6 protein_coding protein_coding MGP_C57BL6NJ_T0022577.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141869584 141872463 + Plekha6 protein_coding processed_transcript MGP_C57BL6NJ_T0022578.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141874376 141881940 + MGP_C57BL6NJ_P0022578 Plekha6 protein_coding protein_coding MGP_C57BL6NJ_T0022579.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141874382 141885084 + MGP_C57BL6NJ_P0022579 Plekha6 protein_coding protein_coding MGP_C57BL6NJ_T0022580.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141894207 141896684 + Plekha6 protein_coding retained_intron MGP_C57BL6NJ_T0022581.1 MGP_C57BL6NJ_G0016885.1 mouse_genomes_project 1 141900408 141904075 + Plekha6 protein_coding retained_intron MGP_C57BL6NJ_T0099640.1 MGP_C57BL6NJ_G0037686.1 mouse_genomes_project 1 162022619 162027931 - Gm25279 snRNA snRNA MGP_C57BL6NJ_T0003003.1 MGP_C57BL6NJ_G0002828.1 mouse_genomes_project 1 98136010 98153013 - 9430060I03Rik antisense antisense MGP_C57BL6NJ_T0009674.1 MGP_C57BL6NJ_G0007759.1 mouse_genomes_project 1 46187823 46187964 + miRNA miRNA MGP_C57BL6NJ_T0099602.1 MGP_C57BL6NJ_G0037648.1 mouse_genomes_project 1 75531736 75531927 + Gm25360 snRNA snRNA MGP_C57BL6NJ_T0012634.1 MGP_C57BL6NJ_G0010679.1 mouse_genomes_project 1 183430359 183430554 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0022311.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136020346 136093399 + MGP_C57BL6NJ_P0022311 Rab3gap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0022312.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136020386 136093391 + MGP_C57BL6NJ_P0022312 Rab3gap1 protein_coding protein_coding MGP_C57BL6NJ_T0022313.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136020415 136053504 + Rab3gap1 protein_coding retained_intron MGP_C57BL6NJ_T0022314.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136050388 136055405 + Rab3gap1 protein_coding retained_intron MGP_C57BL6NJ_T0022315.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136072596 136075791 + Rab3gap1 protein_coding retained_intron MGP_C57BL6NJ_T0022316.1 MGP_C57BL6NJ_G0016828.1 mouse_genomes_project 1 136087727 136092434 + Rab3gap1 protein_coding processed_transcript MGP_C57BL6NJ_T0019948.1 MGP_C57BL6NJ_G0016351.1 mouse_genomes_project 1 39967160 40001593 - MGP_C57BL6NJ_P0019948 Creg2 protein_coding protein_coding MGP_C57BL6NJ_T0100939.1 MGP_C57BL6NJ_G0038985.1 mouse_genomes_project 1 201748051 201748182 - Gm25095 snoRNA snoRNA MGP_C57BL6NJ_T0019778.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36689683 36819468 - MGP_C57BL6NJ_P0019778 Fam178b protein_coding protein_coding MGP_C57BL6NJ_T0019779.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36689687 36722113 - Fam178b protein_coding processed_transcript MGP_C57BL6NJ_T0019780.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36689687 36718098 - Fam178b protein_coding processed_transcript MGP_C57BL6NJ_T0019781.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36689687 36731088 - MGP_C57BL6NJ_P0019781 Fam178b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019782.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36691319 36731631 - MGP_C57BL6NJ_P0019782 Fam178b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019783.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36691858 36716468 - Fam178b protein_coding processed_transcript MGP_C57BL6NJ_T0019784.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36703447 36731109 - Fam178b protein_coding processed_transcript MGP_C57BL6NJ_T0019785.1 MGP_C57BL6NJ_G0016320.1 mouse_genomes_project 1 36730652 36819468 - MGP_C57BL6NJ_P0019785 Fam178b protein_coding protein_coding MGP_C57BL6NJ_T0000659.1 MGP_C57BL6NJ_G0000575.1 mouse_genomes_project 1 84213746 84214863 - TEC TEC MGP_C57BL6NJ_T0006150.1 MGP_C57BL6NJ_G0005149.1 mouse_genomes_project 1 180771149 180792148 - Gm37839 lincRNA lincRNA MGP_C57BL6NJ_T0000920.1 MGP_C57BL6NJ_G0000832.1 mouse_genomes_project 1 201247809 201250246 + TEC TEC MGP_C57BL6NJ_T0000691.1 MGP_C57BL6NJ_G0000607.1 mouse_genomes_project 1 94462532 94464910 + TEC TEC MGP_C57BL6NJ_T0005931.1 MGP_C57BL6NJ_G0004976.1 mouse_genomes_project 1 72530527 72533959 - Gm29113 lincRNA lincRNA MGP_C57BL6NJ_T0019747.1 MGP_C57BL6NJ_G0016313.1 mouse_genomes_project 1 36487945 36540626 + MGP_C57BL6NJ_P0019747 Fer1l5 protein_coding protein_coding MGP_C57BL6NJ_T0019748.1 MGP_C57BL6NJ_G0016313.1 mouse_genomes_project 1 36501127 36523338 + MGP_C57BL6NJ_P0019748 Fer1l5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019749.1 MGP_C57BL6NJ_G0016313.1 mouse_genomes_project 1 36535406 36540629 + MGP_C57BL6NJ_P0019749 Fer1l5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0006052.1 MGP_C57BL6NJ_G0005070.1 mouse_genomes_project 1 128915721 128919759 - 2210011K15Rik lincRNA lincRNA MGP_C57BL6NJ_T0012605.1 MGP_C57BL6NJ_G0010650.1 mouse_genomes_project 1 171762309 171762774 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099653.1 MGP_C57BL6NJ_G0037699.1 mouse_genomes_project 1 187912709 187912885 + Gm25560 snRNA snRNA MGP_C57BL6NJ_T0022655.1 MGP_C57BL6NJ_G0016905.1 mouse_genomes_project 1 142872232 142908973 - MGP_C57BL6NJ_P0022655 Adora1 protein_coding protein_coding MGP_C57BL6NJ_T0022656.1 MGP_C57BL6NJ_G0016905.1 mouse_genomes_project 1 142872234 142909826 - MGP_C57BL6NJ_P0022656 Adora1 protein_coding protein_coding MGP_C57BL6NJ_T0022657.1 MGP_C57BL6NJ_G0016905.1 mouse_genomes_project 1 142874358 142909792 - MGP_C57BL6NJ_P0022657 Adora1 protein_coding protein_coding MGP_C57BL6NJ_T0022658.1 MGP_C57BL6NJ_G0016905.1 mouse_genomes_project 1 142876406 142909759 - MGP_C57BL6NJ_P0022658 Adora1 protein_coding protein_coding MGP_C57BL6NJ_T0020261.1 MGP_C57BL6NJ_G0016413.1 mouse_genomes_project 1 55656006 55685685 - MGP_C57BL6NJ_P0020261 Stk17b protein_coding protein_coding MGP_C57BL6NJ_T0020262.1 MGP_C57BL6NJ_G0016413.1 mouse_genomes_project 1 55661126 55663247 - Stk17b protein_coding retained_intron MGP_C57BL6NJ_T0012502.1 MGP_C57BL6NJ_G0010547.1 mouse_genomes_project 1 124778144 124778618 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002936.1 MGP_C57BL6NJ_G0002776.1 mouse_genomes_project 1 40000294 40007501 + D930019O06Rik antisense antisense MGP_C57BL6NJ_T0019606.1 MGP_C57BL6NJ_G0016289.1 mouse_genomes_project 1 30746364 30781629 + MGP_C57BL6NJ_P0019606 Lgsn protein_coding protein_coding MGP_C57BL6NJ_T0019607.1 MGP_C57BL6NJ_G0016289.1 mouse_genomes_project 1 30760857 30781629 + MGP_C57BL6NJ_P0019607 Lgsn protein_coding protein_coding MGP_C57BL6NJ_T0006161.1 MGP_C57BL6NJ_G0005160.1 mouse_genomes_project 1 189846034 189847436 - 2310043L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0000775.1 MGP_C57BL6NJ_G0000690.1 mouse_genomes_project 1 146194964 146196880 + TEC TEC MGP_C57BL6NJ_T0012210.1 MGP_C57BL6NJ_G0010255.1 mouse_genomes_project 1 22237964 22243575 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012493.1 MGP_C57BL6NJ_G0010538.1 mouse_genomes_project 1 118912876 118913541 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006071.1 MGP_C57BL6NJ_G0005088.1 mouse_genomes_project 1 145082783 145085591 + A430034D21Rik lincRNA lincRNA MGP_C57BL6NJ_T0102381.1 MGP_C57BL6NJ_G0040316.1 mouse_genomes_project 1 55049224 55057161 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102382.1 MGP_C57BL6NJ_G0040316.1 mouse_genomes_project 1 55049250 55065020 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0000528.1 MGP_C57BL6NJ_G0000447.1 mouse_genomes_project 1 20065353 20067680 - TEC TEC MGP_C57BL6NJ_T0009754.1 MGP_C57BL6NJ_G0007839.1 mouse_genomes_project 1 205438744 205438825 - Mir3473c miRNA miRNA MGP_C57BL6NJ_T0005819.1 MGP_C57BL6NJ_G0004893.1 mouse_genomes_project 1 19166540 19171816 + Gm28653 lincRNA lincRNA MGP_C57BL6NJ_T0002899.1 MGP_C57BL6NJ_G0002748.1 mouse_genomes_project 1 7584959 7596050 + Gm15818 antisense antisense MGP_C57BL6NJ_T0022013.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103518683 103563494 - MGP_C57BL6NJ_P0022013 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022014.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103544082 103826837 - MGP_C57BL6NJ_P0022014 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022015.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103544083 103826848 - MGP_C57BL6NJ_P0022015 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022016.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103544088 103698947 - MGP_C57BL6NJ_P0022016 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022017.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103544693 103563072 - MGP_C57BL6NJ_P0022017 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022018.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103548341 103563564 - Pam protein_coding retained_intron MGP_C57BL6NJ_T0022019.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103560214 103563074 - Pam protein_coding retained_intron MGP_C57BL6NJ_T0022020.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103575610 103587150 - Pam protein_coding retained_intron MGP_C57BL6NJ_T0022021.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103577319 103613866 - MGP_C57BL6NJ_P0022021 Pam protein_coding protein_coding MGP_C57BL6NJ_T0022022.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103653004 103698760 - Pam protein_coding retained_intron MGP_C57BL6NJ_T0022023.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103677874 103698936 - Pam protein_coding processed_transcript MGP_C57BL6NJ_T0022024.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103782848 103786742 - Pam protein_coding retained_intron MGP_C57BL6NJ_T0022025.1 MGP_C57BL6NJ_G0016760.1 mouse_genomes_project 1 103786831 103826862 - Pam protein_coding processed_transcript MGP_C57BL6NJ_T0099597.1 MGP_C57BL6NJ_G0037643.1 mouse_genomes_project 1 69259291 69259442 + Gm25411 snRNA snRNA MGP_C57BL6NJ_T0012532.1 MGP_C57BL6NJ_G0010577.1 mouse_genomes_project 1 135148152 135148865 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024266.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191296525 191893263 - MGP_C57BL6NJ_P0024266 Smyd3 protein_coding protein_coding MGP_C57BL6NJ_T0024267.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191299611 191610193 - Smyd3 protein_coding processed_transcript MGP_C57BL6NJ_T0024268.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191299716 191744801 - Smyd3 protein_coding processed_transcript MGP_C57BL6NJ_T0024269.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191301815 191338904 - Smyd3 protein_coding processed_transcript MGP_C57BL6NJ_T0024270.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191748710 191775981 - Smyd3 protein_coding processed_transcript MGP_C57BL6NJ_T0024271.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191765767 191893270 - MGP_C57BL6NJ_P0024271 Smyd3 protein_coding protein_coding MGP_C57BL6NJ_T0024272.1 MGP_C57BL6NJ_G0017258.1 mouse_genomes_project 1 191882634 191893234 - MGP_C57BL6NJ_P0024272 Smyd3 protein_coding protein_coding MGP_C57BL6NJ_T0000795.1 MGP_C57BL6NJ_G0000709.1 mouse_genomes_project 1 149471061 149474427 + TEC TEC MGP_C57BL6NJ_T0012424.1 MGP_C57BL6NJ_G0010469.1 mouse_genomes_project 1 92213715 92214775 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000636.1 MGP_C57BL6NJ_G0000552.1 mouse_genomes_project 1 69670905 69675561 - TEC TEC MGP_C57BL6NJ_T0012238.1 MGP_C57BL6NJ_G0010283.1 mouse_genomes_project 1 33188773 33191028 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000479.1 MGP_C57BL6NJ_G0000398.1 mouse_genomes_project 1 97205 98275 + TEC TEC MGP_C57BL6NJ_T0000728.1 MGP_C57BL6NJ_G0000644.1 mouse_genomes_project 1 131118308 131121803 - TEC TEC MGP_C57BL6NJ_T0022624.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142332703 142445684 - MGP_C57BL6NJ_P0022624 Atp2b4 protein_coding protein_coding MGP_C57BL6NJ_T0022625.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142337670 142395931 - MGP_C57BL6NJ_P0022625 Atp2b4 protein_coding protein_coding MGP_C57BL6NJ_T0022626.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142337670 142395931 - MGP_C57BL6NJ_P0022626 Atp2b4 protein_coding protein_coding MGP_C57BL6NJ_T0022627.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142343145 142395865 - MGP_C57BL6NJ_P0022627 Atp2b4 protein_coding protein_coding MGP_C57BL6NJ_T0022628.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142352630 142395465 - MGP_C57BL6NJ_P0022628 Atp2b4 protein_coding protein_coding MGP_C57BL6NJ_T0022629.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142354972 142356579 - Atp2b4 protein_coding retained_intron MGP_C57BL6NJ_T0022630.1 MGP_C57BL6NJ_G0016897.1 mouse_genomes_project 1 142395883 142445679 - Atp2b4 protein_coding processed_transcript MGP_C57BL6NJ_T0024682.1 MGP_C57BL6NJ_G0017342.1 mouse_genomes_project 1 204658057 204673008 - MGP_C57BL6NJ_P0024682 Nenf protein_coding protein_coding MGP_C57BL6NJ_T0012249.1 MGP_C57BL6NJ_G0010294.1 mouse_genomes_project 1 34524956 34526352 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005892.1 MGP_C57BL6NJ_G0004945.1 mouse_genomes_project 1 54279214 54289492 - Gm28178 lincRNA lincRNA MGP_C57BL6NJ_T0021821.1 MGP_C57BL6NJ_G0016716.1 mouse_genomes_project 1 97778468 97779559 + MGP_C57BL6NJ_P0021821 Olfr1412 protein_coding protein_coding MGP_C57BL6NJ_T0021145.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78760225 78781147 - MGP_C57BL6NJ_P0021145 Ptprn protein_coding protein_coding MGP_C57BL6NJ_T0021146.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78773806 78774946 - Ptprn protein_coding retained_intron MGP_C57BL6NJ_T0021147.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78775439 78780846 - MGP_C57BL6NJ_P0021147 Ptprn protein_coding protein_coding MGP_C57BL6NJ_T0021148.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78775439 78780984 - MGP_C57BL6NJ_P0021148 Ptprn protein_coding protein_coding MGP_C57BL6NJ_T0021149.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78775507 78781436 - MGP_C57BL6NJ_P0021149 Ptprn protein_coding protein_coding MGP_C57BL6NJ_T0021150.1 MGP_C57BL6NJ_G0016573.1 mouse_genomes_project 1 78775531 78781142 - Ptprn protein_coding processed_transcript MGP_C57BL6NJ_T0005803.1 MGP_C57BL6NJ_G0004882.1 mouse_genomes_project 1 4753300 4756079 - lincRNA retained_intron MGP_C57BL6NJ_T0005804.1 MGP_C57BL6NJ_G0004882.1 mouse_genomes_project 1 4755075 4778175 - lincRNA lincRNA MGP_C57BL6NJ_T0012438.1 MGP_C57BL6NJ_G0010483.1 mouse_genomes_project 1 97567458 97567870 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009699.1 MGP_C57BL6NJ_G0007784.1 mouse_genomes_project 1 88534264 88534377 - Mir6353 miRNA miRNA MGP_C57BL6NJ_T0012604.1 MGP_C57BL6NJ_G0010649.1 mouse_genomes_project 1 170184557 170184767 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000797.1 MGP_C57BL6NJ_G0000711.1 mouse_genomes_project 1 150654200 150657310 - TEC TEC MGP_C57BL6NJ_T0100851.1 MGP_C57BL6NJ_G0038897.1 mouse_genomes_project 1 17325393 17325465 - Gm24075 snoRNA snoRNA MGP_C57BL6NJ_T0000714.1 MGP_C57BL6NJ_G0000630.1 mouse_genomes_project 1 112511430 112516382 + TEC TEC MGP_C57BL6NJ_T0012430.1 MGP_C57BL6NJ_G0010475.1 mouse_genomes_project 1 93663056 93663515 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021737.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348534 96373818 + Ube2f protein_coding retained_intron MGP_C57BL6NJ_T0021738.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348541 96384079 + MGP_C57BL6NJ_P0021738 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021739.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348549 96384364 + MGP_C57BL6NJ_P0021739 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021740.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348567 96388671 + MGP_C57BL6NJ_P0021740 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021741.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348595 96384112 + MGP_C57BL6NJ_P0021741 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021742.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348796 96384266 + MGP_C57BL6NJ_P0021742 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021743.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96348886 96363592 + MGP_C57BL6NJ_P0021743 Ube2f protein_coding protein_coding MGP_C57BL6NJ_T0021744.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96362941 96374782 + Ube2f protein_coding retained_intron MGP_C57BL6NJ_T0021745.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96373304 96374890 + Ube2f protein_coding retained_intron MGP_C57BL6NJ_T0021746.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96374449 96383730 + Ube2f protein_coding retained_intron MGP_C57BL6NJ_T0021747.1 MGP_C57BL6NJ_G0016699.1 mouse_genomes_project 1 96381990 96383355 + Ube2f protein_coding retained_intron MGP_C57BL6NJ_T0000866.1 MGP_C57BL6NJ_G0000780.1 mouse_genomes_project 1 177724824 177725730 - TEC TEC MGP_C57BL6NJ_T0099297.1 MGP_C57BL6NJ_G0037360.1 mouse_genomes_project 1 94551802 94559640 + Gm28499 sense_intronic sense_intronic MGP_C57BL6NJ_T0024087.1 MGP_C57BL6NJ_G0017201.1 mouse_genomes_project 1 184957522 184958559 - MGP_C57BL6NJ_P0024087 Olfr1408 protein_coding protein_coding MGP_C57BL6NJ_T0024088.1 MGP_C57BL6NJ_G0017201.1 mouse_genomes_project 1 184957522 184964556 - MGP_C57BL6NJ_P0024088 Olfr1408 protein_coding protein_coding MGP_C57BL6NJ_T0002988.1 MGP_C57BL6NJ_G0002813.1 mouse_genomes_project 1 82085920 82100557 - Gm28410 antisense antisense MGP_C57BL6NJ_T0002917.1 MGP_C57BL6NJ_G0002761.1 mouse_genomes_project 1 30700954 30715022 + Gm29128 antisense antisense MGP_C57BL6NJ_T0021588.1 MGP_C57BL6NJ_G0016662.1 mouse_genomes_project 1 92213715 92214746 - MGP_C57BL6NJ_P0021588 protein_coding protein_coding MGP_C57BL6NJ_T0002952.1 MGP_C57BL6NJ_G0002789.1 mouse_genomes_project 1 57224926 57235293 + Gm10561 antisense antisense MGP_C57BL6NJ_T0009696.1 MGP_C57BL6NJ_G0007781.1 mouse_genomes_project 1 81192618 81192734 - Mir6352 miRNA miRNA MGP_C57BL6NJ_T0102589.1 MGP_C57BL6NJ_G0040409.1 mouse_genomes_project 1 66556296 66574361 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0000819.1 MGP_C57BL6NJ_G0000733.1 mouse_genomes_project 1 166247567 166247802 + TEC TEC MGP_C57BL6NJ_T0100879.1 MGP_C57BL6NJ_G0038925.1 mouse_genomes_project 1 65755141 65755273 + Snora41 snoRNA snoRNA MGP_C57BL6NJ_T0012128.1 MGP_C57BL6NJ_G0010173.1 mouse_genomes_project 1 1649546 1649996 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000783.1 MGP_C57BL6NJ_G0000697.1 mouse_genomes_project 1 146926324 146928482 + TEC TEC MGP_C57BL6NJ_T0009685.1 MGP_C57BL6NJ_G0007770.1 mouse_genomes_project 1 65861367 65861505 - Gm24513 miRNA miRNA MGP_C57BL6NJ_T0009668.1 MGP_C57BL6NJ_G0007753.1 mouse_genomes_project 1 36451810 36451887 - Mir6898 miRNA miRNA MGP_C57BL6NJ_T0098937.1 MGP_C57BL6NJ_G0037001.1 mouse_genomes_project 1 159707091 159707200 - n-R5s218 rRNA rRNA MGP_C57BL6NJ_T0000619.1 MGP_C57BL6NJ_G0000535.1 mouse_genomes_project 1 63458060 63460539 + TEC TEC MGP_C57BL6NJ_T0022094.1 MGP_C57BL6NJ_G0016779.1 mouse_genomes_project 1 113762334 113775319 + MGP_C57BL6NJ_P0022094 Serpinb11 protein_coding protein_coding MGP_C57BL6NJ_T0022095.1 MGP_C57BL6NJ_G0016779.1 mouse_genomes_project 1 113763065 113781612 + MGP_C57BL6NJ_P0022095 Serpinb11 protein_coding protein_coding MGP_C57BL6NJ_T0006093.1 MGP_C57BL6NJ_G0005105.1 mouse_genomes_project 1 159050965 159072574 + Gm29020 lincRNA lincRNA MGP_C57BL6NJ_T0006220.1 MGP_C57BL6NJ_G0005203.1 mouse_genomes_project 1 206277908 206278982 + 1700065J18Rik lincRNA lincRNA MGP_C57BL6NJ_T0006221.1 MGP_C57BL6NJ_G0005203.1 mouse_genomes_project 1 206277918 206278988 + 1700065J18Rik lincRNA lincRNA MGP_C57BL6NJ_T0020715.1 MGP_C57BL6NJ_G0016497.1 mouse_genomes_project 1 67818372 67836139 - MGP_C57BL6NJ_P0020715 Gm28845 protein_coding protein_coding MGP_C57BL6NJ_T0000588.1 MGP_C57BL6NJ_G0000504.1 mouse_genomes_project 1 41008519 41022481 - TEC TEC MGP_C57BL6NJ_T0006024.1 MGP_C57BL6NJ_G0005050.1 mouse_genomes_project 1 114112805 114120206 + Gm15389 lincRNA lincRNA MGP_C57BL6NJ_T0005983.1 MGP_C57BL6NJ_G0005014.1 mouse_genomes_project 1 93579525 93581318 + Gm29336 lincRNA lincRNA MGP_C57BL6NJ_T0023105.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163061977 163133244 - MGP_C57BL6NJ_P0023105 Smg7 protein_coding protein_coding MGP_C57BL6NJ_T0023106.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163061978 163108074 - MGP_C57BL6NJ_P0023106 Smg7 protein_coding protein_coding MGP_C57BL6NJ_T0023107.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163065905 163133268 - MGP_C57BL6NJ_P0023107 Smg7 protein_coding protein_coding MGP_C57BL6NJ_T0023108.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163072297 163101064 - Smg7 protein_coding processed_transcript MGP_C57BL6NJ_T0023109.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163072319 163076013 - Smg7 protein_coding processed_transcript MGP_C57BL6NJ_T0023110.1 MGP_C57BL6NJ_G0016995.1 mouse_genomes_project 1 163072933 163075928 - Smg7 protein_coding retained_intron MGP_C57BL6NJ_T0021714.1 MGP_C57BL6NJ_G0016694.1 mouse_genomes_project 1 96040363 96041283 + MGP_C57BL6NJ_P0021714 Prlh protein_coding protein_coding MGP_C57BL6NJ_T0003096.1 MGP_C57BL6NJ_G0002897.1 mouse_genomes_project 1 183198983 183202527 - B930036N10Rik antisense antisense MGP_C57BL6NJ_T0003097.1 MGP_C57BL6NJ_G0002897.1 mouse_genomes_project 1 183201211 183202527 - B930036N10Rik antisense antisense MGP_C57BL6NJ_T0005885.1 MGP_C57BL6NJ_G0004940.1 mouse_genomes_project 1 52843594 52848374 + lincRNA lincRNA MGP_C57BL6NJ_T0009744.1 MGP_C57BL6NJ_G0007829.1 mouse_genomes_project 1 185623551 185623635 - Gm44481 miRNA miRNA MGP_C57BL6NJ_T0000664.1 MGP_C57BL6NJ_G0000580.1 mouse_genomes_project 1 84753033 84754866 - TEC TEC MGP_C57BL6NJ_T0002903.1 MGP_C57BL6NJ_G0002751.1 mouse_genomes_project 1 14319292 14334880 + Gm28095 antisense antisense MGP_C57BL6NJ_T0012450.1 MGP_C57BL6NJ_G0010495.1 mouse_genomes_project 1 105461618 105463464 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000813.1 MGP_C57BL6NJ_G0000727.1 mouse_genomes_project 1 162482917 162483263 - TEC TEC MGP_C57BL6NJ_T0012484.1 MGP_C57BL6NJ_G0010529.1 mouse_genomes_project 1 116388891 116390525 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023571.1 MGP_C57BL6NJ_G0017079.1 mouse_genomes_project 1 175105643 175107940 + MGP_C57BL6NJ_P0023571 Mettl18 protein_coding protein_coding MGP_C57BL6NJ_T0023572.1 MGP_C57BL6NJ_G0017079.1 mouse_genomes_project 1 175105643 175107940 + MGP_C57BL6NJ_P0023572 Mettl18 protein_coding protein_coding MGP_C57BL6NJ_T0006065.1 MGP_C57BL6NJ_G0005082.1 mouse_genomes_project 1 142234708 142238723 + Gm26706 lincRNA lincRNA MGP_C57BL6NJ_T0002891.1 MGP_C57BL6NJ_G0002745.1 mouse_genomes_project 1 2128487 2133577 + Gm16041 antisense antisense MGP_C57BL6NJ_T0012455.1 MGP_C57BL6NJ_G0010500.1 mouse_genomes_project 1 106488325 106488878 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021595.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287739 92302758 + Inpp5d protein_coding retained_intron MGP_C57BL6NJ_T0021596.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287745 92394361 + MGP_C57BL6NJ_P0021596 Inpp5d protein_coding protein_coding MGP_C57BL6NJ_T0021597.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287772 92312477 + Inpp5d protein_coding processed_transcript MGP_C57BL6NJ_T0021598.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287781 92394361 + MGP_C57BL6NJ_P0021598 Inpp5d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021599.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287782 92393552 + MGP_C57BL6NJ_P0021599 Inpp5d protein_coding protein_coding MGP_C57BL6NJ_T0021600.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92287872 92393181 + MGP_C57BL6NJ_P0021600 Inpp5d protein_coding protein_coding MGP_C57BL6NJ_T0021601.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92288010 92337730 + MGP_C57BL6NJ_P0021601 Inpp5d protein_coding protein_coding MGP_C57BL6NJ_T0021602.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92289057 92337654 + MGP_C57BL6NJ_P0021602 Inpp5d protein_coding protein_coding MGP_C57BL6NJ_T0021603.1 MGP_C57BL6NJ_G0016663.1 mouse_genomes_project 1 92383198 92386017 + Inpp5d protein_coding processed_transcript MGP_C57BL6NJ_T0000493.1 MGP_C57BL6NJ_G0000412.1 mouse_genomes_project 1 4201373 4205597 - TEC TEC MGP_C57BL6NJ_T0099578.1 MGP_C57BL6NJ_G0037624.1 mouse_genomes_project 1 24398742 24398846 + Gm25294 snRNA snRNA MGP_C57BL6NJ_T0021758.1 MGP_C57BL6NJ_G0016701.1 mouse_genomes_project 1 96424846 96452570 + MGP_C57BL6NJ_P0021758 Espnl protein_coding protein_coding MGP_C57BL6NJ_T0021759.1 MGP_C57BL6NJ_G0016701.1 mouse_genomes_project 1 96424904 96450206 + MGP_C57BL6NJ_P0021759 Espnl protein_coding protein_coding MGP_C57BL6NJ_T0002965.1 MGP_C57BL6NJ_G0002798.1 mouse_genomes_project 1 64662914 64667829 - Pard3bos2 antisense antisense MGP_C57BL6NJ_T0020644.1 MGP_C57BL6NJ_G0016478.1 mouse_genomes_project 1 65759841 65799989 - MGP_C57BL6NJ_P0020644 Gpr1 protein_coding protein_coding MGP_C57BL6NJ_T0020645.1 MGP_C57BL6NJ_G0016478.1 mouse_genomes_project 1 65791859 65799669 - Gpr1 protein_coding processed_transcript MGP_C57BL6NJ_T0023617.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176412380 176442980 - MGP_C57BL6NJ_P0023617 Tiprl protein_coding protein_coding MGP_C57BL6NJ_T0023618.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176415676 176416622 - Tiprl protein_coding retained_intron MGP_C57BL6NJ_T0023619.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176415820 176443033 - MGP_C57BL6NJ_P0023619 Tiprl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023620.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176422325 176442959 - Tiprl protein_coding processed_transcript MGP_C57BL6NJ_T0023621.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176432882 176442550 - MGP_C57BL6NJ_P0023621 Tiprl protein_coding protein_coding MGP_C57BL6NJ_T0023622.1 MGP_C57BL6NJ_G0017093.1 mouse_genomes_project 1 176433741 176442969 - Tiprl protein_coding processed_transcript MGP_C57BL6NJ_T0023740.1 MGP_C57BL6NJ_G0017118.1 mouse_genomes_project 1 178958440 179004554 + MGP_C57BL6NJ_P0023740 Rxrg protein_coding protein_coding MGP_C57BL6NJ_T0009663.1 MGP_C57BL6NJ_G0007748.1 mouse_genomes_project 1 28825986 28826111 + Mir6342 miRNA miRNA MGP_C57BL6NJ_T0022602.1 MGP_C57BL6NJ_G0016892.1 mouse_genomes_project 1 142228182 142234515 - MGP_C57BL6NJ_P0022602 Snrpe protein_coding protein_coding MGP_C57BL6NJ_T0022603.1 MGP_C57BL6NJ_G0016892.1 mouse_genomes_project 1 142228200 142234345 - MGP_C57BL6NJ_P0022603 Snrpe protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022604.1 MGP_C57BL6NJ_G0016892.1 mouse_genomes_project 1 142230391 142234547 - MGP_C57BL6NJ_P0022604 Snrpe protein_coding protein_coding MGP_C57BL6NJ_T0022605.1 MGP_C57BL6NJ_G0016892.1 mouse_genomes_project 1 142230827 142234223 - MGP_C57BL6NJ_P0022605 Snrpe protein_coding protein_coding MGP_C57BL6NJ_T0022606.1 MGP_C57BL6NJ_G0016892.1 mouse_genomes_project 1 142233158 142234513 - MGP_C57BL6NJ_P0022606 Snrpe protein_coding protein_coding MGP_C57BL6NJ_T0023864.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182899114 182899802 - Ndufs2 protein_coding retained_intron MGP_C57BL6NJ_T0023865.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182899114 182912956 - Ndufs2 protein_coding retained_intron MGP_C57BL6NJ_T0023866.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182899114 182901790 - Ndufs2 protein_coding processed_transcript MGP_C57BL6NJ_T0023867.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182899114 182912956 - MGP_C57BL6NJ_P0023867 Ndufs2 protein_coding protein_coding MGP_C57BL6NJ_T0023868.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182899114 182912956 - MGP_C57BL6NJ_P0023868 Ndufs2 protein_coding protein_coding MGP_C57BL6NJ_T0023869.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182901406 182904317 - Ndufs2 protein_coding processed_transcript MGP_C57BL6NJ_T0023870.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182902781 182918808 - MGP_C57BL6NJ_P0023870 Ndufs2 protein_coding protein_coding MGP_C57BL6NJ_T0023871.1 MGP_C57BL6NJ_G0017151.1 mouse_genomes_project 1 182902999 182918945 - MGP_C57BL6NJ_P0023871 Ndufs2 protein_coding protein_coding MGP_C57BL6NJ_T0012540.1 MGP_C57BL6NJ_G0010585.1 mouse_genomes_project 1 142151625 142152417 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006094.1 MGP_C57BL6NJ_G0005106.1 mouse_genomes_project 1 159372958 159410458 - Gm29398 lincRNA lincRNA MGP_C57BL6NJ_T0006095.1 MGP_C57BL6NJ_G0005106.1 mouse_genomes_project 1 159380468 159410457 - Gm29398 lincRNA lincRNA MGP_C57BL6NJ_T0012370.1 MGP_C57BL6NJ_G0010415.1 mouse_genomes_project 1 68867030 68867442 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006155.1 MGP_C57BL6NJ_G0005154.1 mouse_genomes_project 1 183115829 183132613 - Gm26641 lincRNA lincRNA MGP_C57BL6NJ_T0000747.1 MGP_C57BL6NJ_G0000663.1 mouse_genomes_project 1 136334123 136335439 + TEC TEC MGP_C57BL6NJ_T0022497.1 MGP_C57BL6NJ_G0016870.1 mouse_genomes_project 1 140615410 140644362 - MGP_C57BL6NJ_P0022497 Cdk18 protein_coding protein_coding MGP_C57BL6NJ_T0022498.1 MGP_C57BL6NJ_G0016870.1 mouse_genomes_project 1 140617759 140620087 - Cdk18 protein_coding retained_intron MGP_C57BL6NJ_T0022499.1 MGP_C57BL6NJ_G0016870.1 mouse_genomes_project 1 140617937 140644283 - MGP_C57BL6NJ_P0022499 Cdk18 protein_coding protein_coding MGP_C57BL6NJ_T0022500.1 MGP_C57BL6NJ_G0016870.1 mouse_genomes_project 1 140618004 140619864 - MGP_C57BL6NJ_P0022500 Cdk18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022501.1 MGP_C57BL6NJ_G0016870.1 mouse_genomes_project 1 140618107 140619429 - Cdk18 protein_coding retained_intron MGP_C57BL6NJ_T0020737.1 MGP_C57BL6NJ_G0016501.1 mouse_genomes_project 1 68026576 68101577 + MGP_C57BL6NJ_P0020737 Pth2r protein_coding protein_coding MGP_C57BL6NJ_T0020738.1 MGP_C57BL6NJ_G0016501.1 mouse_genomes_project 1 68065279 68147627 + MGP_C57BL6NJ_P0020738 Pth2r protein_coding protein_coding MGP_C57BL6NJ_T0021879.1 MGP_C57BL6NJ_G0016730.1 mouse_genomes_project 1 98341941 98351936 + MGP_C57BL6NJ_P0021879 Agxt protein_coding protein_coding MGP_C57BL6NJ_T0021880.1 MGP_C57BL6NJ_G0016730.1 mouse_genomes_project 1 98342269 98344704 + Agxt protein_coding retained_intron MGP_C57BL6NJ_T0021881.1 MGP_C57BL6NJ_G0016730.1 mouse_genomes_project 1 98346393 98351932 + Agxt protein_coding processed_transcript MGP_C57BL6NJ_T0012578.1 MGP_C57BL6NJ_G0010623.1 mouse_genomes_project 1 159991918 159993985 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005806.1 MGP_C57BL6NJ_G0004884.1 mouse_genomes_project 1 7211713 7213042 - Gm29520 lincRNA lincRNA MGP_C57BL6NJ_T0024372.1 MGP_C57BL6NJ_G0017277.1 mouse_genomes_project 1 193416665 193434366 + MGP_C57BL6NJ_P0024372 Lefty1 protein_coding protein_coding MGP_C57BL6NJ_T0024373.1 MGP_C57BL6NJ_G0017277.1 mouse_genomes_project 1 193432607 193433765 + Lefty1 protein_coding retained_intron MGP_C57BL6NJ_T0002949.1 MGP_C57BL6NJ_G0002787.1 mouse_genomes_project 1 54922041 54923623 + Gm28777 antisense antisense MGP_C57BL6NJ_T0012524.1 MGP_C57BL6NJ_G0010569.1 mouse_genomes_project 1 130880022 130881320 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006145.1 MGP_C57BL6NJ_G0005145.1 mouse_genomes_project 1 177654999 177657028 - Gm15853 lincRNA lincRNA MGP_C57BL6NJ_T0000916.1 MGP_C57BL6NJ_G0000828.1 mouse_genomes_project 1 200071660 200079535 - TEC TEC MGP_C57BL6NJ_T0098933.1 MGP_C57BL6NJ_G0036997.1 mouse_genomes_project 1 125992126 125992243 - Gm22094 rRNA rRNA MGP_C57BL6NJ_T0012343.1 MGP_C57BL6NJ_G0010388.1 mouse_genomes_project 1 63252441 63253268 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000554.1 MGP_C57BL6NJ_G0000471.1 mouse_genomes_project 1 24819038 24820260 + TEC TEC MGP_C57BL6NJ_T0100891.1 MGP_C57BL6NJ_G0038937.1 mouse_genomes_project 1 102396272 102396400 + Gm26078 snoRNA snoRNA MGP_C57BL6NJ_T0012537.1 MGP_C57BL6NJ_G0010582.1 mouse_genomes_project 1 138494681 138495090 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100926.1 MGP_C57BL6NJ_G0038972.1 mouse_genomes_project 1 171934942 171935026 + Mir5117 snoRNA snoRNA MGP_C57BL6NJ_T0098928.1 MGP_C57BL6NJ_G0036992.1 mouse_genomes_project 1 87449482 87449603 - n-R5s214 rRNA rRNA MGP_C57BL6NJ_T0102121.1 MGP_C57BL6NJ_G0040167.1 mouse_genomes_project 1 34294332 34296643 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0012318.1 MGP_C57BL6NJ_G0010363.1 mouse_genomes_project 1 56494825 56495404 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102675.1 MGP_C57BL6NJ_G0040470.1 mouse_genomes_project 1 124958647 124987891 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100923.1 MGP_C57BL6NJ_G0038969.1 mouse_genomes_project 1 171933643 171933726 + Gm22357 snoRNA snoRNA MGP_C57BL6NJ_T0022989.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159802115 159910468 - MGP_C57BL6NJ_P0022989 Pla2g4a protein_coding protein_coding MGP_C57BL6NJ_T0022990.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159802126 159898215 - MGP_C57BL6NJ_P0022990 Pla2g4a protein_coding protein_coding MGP_C57BL6NJ_T0022991.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159861893 159936399 - MGP_C57BL6NJ_P0022991 Pla2g4a protein_coding protein_coding MGP_C57BL6NJ_T0022992.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159861933 159877966 - Pla2g4a protein_coding processed_transcript MGP_C57BL6NJ_T0022993.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159894652 159936425 - Pla2g4a protein_coding retained_intron MGP_C57BL6NJ_T0022994.1 MGP_C57BL6NJ_G0016975.1 mouse_genomes_project 1 159910286 159936396 - Pla2g4a protein_coding processed_transcript MGP_C57BL6NJ_T0012195.1 MGP_C57BL6NJ_G0010240.1 mouse_genomes_project 1 17434649 17434928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099239.1 MGP_C57BL6NJ_G0037303.1 mouse_genomes_project 1 170095547 170095687 + Scarna3a scaRNA scaRNA MGP_C57BL6NJ_T0020671.1 MGP_C57BL6NJ_G0016485.1 mouse_genomes_project 1 66684263 66776198 - MGP_C57BL6NJ_P0020671 Klf7 protein_coding protein_coding MGP_C57BL6NJ_T0020672.1 MGP_C57BL6NJ_G0016485.1 mouse_genomes_project 1 66696664 66776189 - MGP_C57BL6NJ_P0020672 Klf7 protein_coding protein_coding MGP_C57BL6NJ_T0020673.1 MGP_C57BL6NJ_G0016485.1 mouse_genomes_project 1 66733846 66778548 - MGP_C57BL6NJ_P0020673 Klf7 protein_coding protein_coding MGP_C57BL6NJ_T0000660.1 MGP_C57BL6NJ_G0000576.1 mouse_genomes_project 1 84235090 84236773 - TEC TEC MGP_C57BL6NJ_T0019553.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22826648 22899593 - MGP_C57BL6NJ_P0019553 Fam135a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019554.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22826648 22842851 - MGP_C57BL6NJ_P0019554 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019555.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22826800 22914023 - MGP_C57BL6NJ_P0019555 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019556.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22827146 22914011 - MGP_C57BL6NJ_P0019556 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019557.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22827159 22845178 - MGP_C57BL6NJ_P0019557 Fam135a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0019558.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22827236 22914162 - MGP_C57BL6NJ_P0019558 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019559.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22840366 22844542 - MGP_C57BL6NJ_P0019559 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019560.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22844813 22914045 - MGP_C57BL6NJ_P0019560 Fam135a protein_coding protein_coding MGP_C57BL6NJ_T0019561.1 MGP_C57BL6NJ_G0016279.1 mouse_genomes_project 1 22869315 22914170 - Fam135a protein_coding retained_intron MGP_C57BL6NJ_T0023707.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177661750 177686769 - MGP_C57BL6NJ_P0023707 Pogk protein_coding protein_coding MGP_C57BL6NJ_T0023708.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177669348 177686378 - MGP_C57BL6NJ_P0023708 Pogk protein_coding protein_coding MGP_C57BL6NJ_T0023709.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177670734 177686815 - MGP_C57BL6NJ_P0023709 Pogk protein_coding protein_coding MGP_C57BL6NJ_T0023710.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177672517 177686774 - MGP_C57BL6NJ_P0023710 Pogk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023711.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177673289 177686850 - MGP_C57BL6NJ_P0023711 Pogk protein_coding protein_coding MGP_C57BL6NJ_T0023712.1 MGP_C57BL6NJ_G0017108.1 mouse_genomes_project 1 177680336 177686276 - MGP_C57BL6NJ_P0023712 Pogk protein_coding protein_coding MGP_C57BL6NJ_T0000639.1 MGP_C57BL6NJ_G0000555.1 mouse_genomes_project 1 71554847 71556916 - TEC TEC MGP_C57BL6NJ_T0002990.1 MGP_C57BL6NJ_G0002815.1 mouse_genomes_project 1 90486283 90490369 - Gm28884 antisense antisense MGP_C57BL6NJ_T0021999.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103418509 103427611 - Ppip5k2 protein_coding retained_intron MGP_C57BL6NJ_T0022000.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103418509 103490269 - MGP_C57BL6NJ_P0022000 Ppip5k2 protein_coding protein_coding MGP_C57BL6NJ_T0022001.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103418509 103490269 - MGP_C57BL6NJ_P0022001 Ppip5k2 protein_coding protein_coding MGP_C57BL6NJ_T0022002.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103420126 103481540 - MGP_C57BL6NJ_P0022002 Ppip5k2 protein_coding protein_coding MGP_C57BL6NJ_T0022003.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103423895 103429008 - MGP_C57BL6NJ_P0022003 Ppip5k2 protein_coding protein_coding MGP_C57BL6NJ_T0022004.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103431248 103435211 - Ppip5k2 protein_coding retained_intron MGP_C57BL6NJ_T0022005.1 MGP_C57BL6NJ_G0016758.1 mouse_genomes_project 1 103459561 103463532 - Ppip5k2 protein_coding retained_intron MGP_C57BL6NJ_T0021254.1 MGP_C57BL6NJ_G0016588.1 mouse_genomes_project 1 82070564 82186552 + MGP_C57BL6NJ_P0021254 Sgpp2 protein_coding protein_coding MGP_C57BL6NJ_T0019507.1 MGP_C57BL6NJ_G0016265.1 mouse_genomes_project 1 19449074 19452976 + Efhc1 protein_coding processed_transcript MGP_C57BL6NJ_T0019508.1 MGP_C57BL6NJ_G0016265.1 mouse_genomes_project 1 19449136 19487195 + MGP_C57BL6NJ_P0019508 Efhc1 protein_coding protein_coding MGP_C57BL6NJ_T0009698.1 MGP_C57BL6NJ_G0007783.1 mouse_genomes_project 1 86988232 86988285 + Gm22396 miRNA miRNA MGP_C57BL6NJ_T0021262.1 MGP_C57BL6NJ_G0016590.1 mouse_genomes_project 1 82266436 82289054 - MGP_C57BL6NJ_P0021262 protein_coding protein_coding MGP_C57BL6NJ_T0021263.1 MGP_C57BL6NJ_G0016590.1 mouse_genomes_project 1 82266439 82278291 - protein_coding processed_transcript MGP_C57BL6NJ_T0022400.1 MGP_C57BL6NJ_G0016848.1 mouse_genomes_project 1 139283526 139288907 - MGP_C57BL6NJ_P0022400 Il24 protein_coding protein_coding MGP_C57BL6NJ_T0022401.1 MGP_C57BL6NJ_G0016848.1 mouse_genomes_project 1 139283526 139287449 - MGP_C57BL6NJ_P0022401 Il24 protein_coding protein_coding MGP_C57BL6NJ_T0022402.1 MGP_C57BL6NJ_G0016848.1 mouse_genomes_project 1 139283907 139288792 - MGP_C57BL6NJ_P0022402 Il24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022403.1 MGP_C57BL6NJ_G0016848.1 mouse_genomes_project 1 139286239 139288866 - MGP_C57BL6NJ_P0022403 Il24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099614.1 MGP_C57BL6NJ_G0037660.1 mouse_genomes_project 1 103777875 103777982 + Gm24465 snRNA snRNA MGP_C57BL6NJ_T0012666.1 MGP_C57BL6NJ_G0010711.1 mouse_genomes_project 1 204326407 204326834 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021031.1 MGP_C57BL6NJ_G0016556.1 mouse_genomes_project 1 78439283 78443216 - MGP_C57BL6NJ_P0021031 Fev protein_coding protein_coding MGP_C57BL6NJ_T0021032.1 MGP_C57BL6NJ_G0016556.1 mouse_genomes_project 1 78439780 78443119 - MGP_C57BL6NJ_P0021032 Fev protein_coding protein_coding MGP_C57BL6NJ_T0021033.1 MGP_C57BL6NJ_G0016556.1 mouse_genomes_project 1 78440181 78442404 - Fev protein_coding retained_intron MGP_C57BL6NJ_T0099568.1 MGP_C57BL6NJ_G0037614.1 mouse_genomes_project 1 1640070 1640177 + Gm22307 snRNA snRNA MGP_C57BL6NJ_T0012632.1 MGP_C57BL6NJ_G0010677.1 mouse_genomes_project 1 183242185 183242355 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019372.1 MGP_C57BL6NJ_G0016231.1 mouse_genomes_project 1 10709507 10849283 - MGP_C57BL6NJ_P0019372 Slco5a1 protein_coding protein_coding MGP_C57BL6NJ_T0019373.1 MGP_C57BL6NJ_G0016231.1 mouse_genomes_project 1 10710027 10848601 - MGP_C57BL6NJ_P0019373 Slco5a1 protein_coding protein_coding MGP_C57BL6NJ_T0019374.1 MGP_C57BL6NJ_G0016231.1 mouse_genomes_project 1 10716754 10849241 - MGP_C57BL6NJ_P0019374 Slco5a1 protein_coding protein_coding MGP_C57BL6NJ_T0019375.1 MGP_C57BL6NJ_G0016231.1 mouse_genomes_project 1 10719489 10780556 - Slco5a1 protein_coding processed_transcript MGP_C57BL6NJ_T0019376.1 MGP_C57BL6NJ_G0016231.1 mouse_genomes_project 1 10831328 10849283 - Slco5a1 protein_coding processed_transcript MGP_C57BL6NJ_T0002943.1 MGP_C57BL6NJ_G0002782.1 mouse_genomes_project 1 43793316 43794564 + 8430432A02Rik antisense antisense MGP_C57BL6NJ_T0022138.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125700961 125954642 + MGP_C57BL6NJ_P0022138 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022139.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125700961 125954642 + MGP_C57BL6NJ_P0022139 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022140.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125700961 125954642 + MGP_C57BL6NJ_P0022140 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022141.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125700961 125954707 + MGP_C57BL6NJ_P0022141 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022142.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701247 125837783 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022143.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701348 125952397 + MGP_C57BL6NJ_P0022143 Clasp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022144.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701357 125954701 + MGP_C57BL6NJ_P0022144 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022145.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701357 125952814 + MGP_C57BL6NJ_P0022145 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022146.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701357 125952814 + MGP_C57BL6NJ_P0022146 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022147.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701358 125952971 + MGP_C57BL6NJ_P0022147 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022148.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701359 125842146 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022149.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701375 125952397 + MGP_C57BL6NJ_P0022149 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022150.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125701419 125954450 + MGP_C57BL6NJ_P0022150 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022151.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125732330 125954710 + MGP_C57BL6NJ_P0022151 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022152.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125732494 125952344 + MGP_C57BL6NJ_P0022152 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022153.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125732494 125959988 + MGP_C57BL6NJ_P0022153 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022154.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125775217 125832333 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022155.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125785166 125952331 + Clasp1 protein_coding processed_transcript MGP_C57BL6NJ_T0022156.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125785221 125838466 + Clasp1 protein_coding processed_transcript MGP_C57BL6NJ_T0022157.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125785982 125835956 + Clasp1 protein_coding processed_transcript MGP_C57BL6NJ_T0022158.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125787167 125839526 + MGP_C57BL6NJ_P0022158 Clasp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022159.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125797434 125952369 + MGP_C57BL6NJ_P0022159 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022160.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125844806 125861578 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022161.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125847286 125883617 + MGP_C57BL6NJ_P0022161 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022162.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125867783 125954667 + MGP_C57BL6NJ_P0022162 Clasp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022163.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125870470 125873195 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022164.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125882916 125883636 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022165.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125883682 125916774 + MGP_C57BL6NJ_P0022165 Clasp1 protein_coding protein_coding MGP_C57BL6NJ_T0022166.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125889957 125892047 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0022167.1 MGP_C57BL6NJ_G0016795.1 mouse_genomes_project 1 125950206 125954642 + Clasp1 protein_coding retained_intron MGP_C57BL6NJ_T0021495.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90939535 90954212 - MGP_C57BL6NJ_P0021495 Ncl protein_coding protein_coding MGP_C57BL6NJ_T0021496.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90945302 90954176 - Ncl protein_coding retained_intron MGP_C57BL6NJ_T0021497.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90945303 90946019 - Ncl protein_coding retained_intron MGP_C57BL6NJ_T0021498.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90945371 90946871 - Ncl protein_coding retained_intron MGP_C57BL6NJ_T0021499.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90945908 90947114 - Ncl protein_coding retained_intron MGP_C57BL6NJ_T0021500.1 MGP_C57BL6NJ_G0016640.1 mouse_genomes_project 1 90952119 90953781 - MGP_C57BL6NJ_P0021500 Ncl protein_coding protein_coding MGP_C57BL6NJ_T0024661.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204375127 204394956 - MGP_C57BL6NJ_P0024661 Tatdn3 protein_coding protein_coding MGP_C57BL6NJ_T0024662.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204375138 204394881 - MGP_C57BL6NJ_P0024662 Tatdn3 protein_coding protein_coding MGP_C57BL6NJ_T0024663.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204375143 204394929 - MGP_C57BL6NJ_P0024663 Tatdn3 protein_coding protein_coding MGP_C57BL6NJ_T0024664.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204375143 204394928 - MGP_C57BL6NJ_P0024664 Tatdn3 protein_coding protein_coding MGP_C57BL6NJ_T0024665.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204375146 204379693 - Tatdn3 protein_coding retained_intron MGP_C57BL6NJ_T0024666.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204386980 204390870 - Tatdn3 protein_coding retained_intron MGP_C57BL6NJ_T0024667.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204389922 204391465 - Tatdn3 protein_coding retained_intron MGP_C57BL6NJ_T0024668.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204390804 204394928 - Tatdn3 protein_coding retained_intron MGP_C57BL6NJ_T0024669.1 MGP_C57BL6NJ_G0017337.1 mouse_genomes_project 1 204392086 204394928 - Tatdn3 protein_coding retained_intron MGP_C57BL6NJ_T0011501.1 MGP_C57BL6NJ_G0009586.1 mouse_genomes_project 1 49034751 49035021 - Gm23829 misc_RNA misc_RNA MGP_C57BL6NJ_T0012287.1 MGP_C57BL6NJ_G0010332.1 mouse_genomes_project 1 46790291 46793667 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012192.1 MGP_C57BL6NJ_G0010237.1 mouse_genomes_project 1 16542220 16543205 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0021519.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91341020 91390231 + Dis3l2 protein_coding processed_transcript MGP_C57BL6NJ_T0021520.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91341031 91732842 + MGP_C57BL6NJ_P0021520 Dis3l2 protein_coding protein_coding MGP_C57BL6NJ_T0021521.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91341040 91533557 + Dis3l2 protein_coding retained_intron MGP_C57BL6NJ_T0021522.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91341040 91731942 + MGP_C57BL6NJ_P0021522 Dis3l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021523.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91341055 91732839 + MGP_C57BL6NJ_P0021523 Dis3l2 protein_coding protein_coding MGP_C57BL6NJ_T0021524.1 MGP_C57BL6NJ_G0016647.1 mouse_genomes_project 1 91505109 91505844 + Dis3l2 protein_coding retained_intron MGP_C57BL6NJ_T0000922.1 MGP_C57BL6NJ_G0000834.1 mouse_genomes_project 1 202828804 202829689 - TEC TEC MGP_C57BL6NJ_T0022388.1 MGP_C57BL6NJ_G0016844.1 mouse_genomes_project 1 139113178 139127624 + MGP_C57BL6NJ_P0022388 AA986860 protein_coding protein_coding MGP_C57BL6NJ_T0022389.1 MGP_C57BL6NJ_G0016844.1 mouse_genomes_project 1 139113312 139125465 + AA986860 protein_coding processed_transcript MGP_C57BL6NJ_T0022390.1 MGP_C57BL6NJ_G0016844.1 mouse_genomes_project 1 139123273 139127623 + AA986860 protein_coding retained_intron MGP_C57BL6NJ_T0100889.1 MGP_C57BL6NJ_G0038935.1 mouse_genomes_project 1 100065440 100065509 - Gm23389 snoRNA snoRNA MGP_C57BL6NJ_T0022324.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136272255 136355003 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022325.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136272275 136351001 + MGP_C57BL6NJ_P0022325 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022326.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136272278 136414212 + MGP_C57BL6NJ_P0022326 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022327.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136272278 136360728 + MGP_C57BL6NJ_P0022327 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022328.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136272285 136280670 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022329.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136312193 136358781 + MGP_C57BL6NJ_P0022329 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022330.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136312216 136323557 + MGP_C57BL6NJ_P0022330 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022331.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136322044 136351054 + MGP_C57BL6NJ_P0022331 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022332.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136343504 136350015 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022333.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136346564 136350989 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022334.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136348708 136360528 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022335.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136351014 136365430 + MGP_C57BL6NJ_P0022335 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022336.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136353612 136383407 + MGP_C57BL6NJ_P0022336 R3hdm1 protein_coding protein_coding MGP_C57BL6NJ_T0022337.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136364761 136368470 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022338.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136379256 136414211 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0022339.1 MGP_C57BL6NJ_G0016830.1 mouse_genomes_project 1 136411854 136414212 + R3hdm1 protein_coding retained_intron MGP_C57BL6NJ_T0102685.1 MGP_C57BL6NJ_G0040480.1 mouse_genomes_project 1 172088319 172148057 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017436.1 MGP_C57BL6NJ_G0015481.1 mouse_genomes_project 1 1605232 1608060 + Gm37587 processed_transcript retained_intron MGP_C57BL6NJ_T0017437.1 MGP_C57BL6NJ_G0015481.1 mouse_genomes_project 1 1606155 1608240 + Gm37587 processed_transcript antisense MGP_C57BL6NJ_T0022353.1 MGP_C57BL6NJ_G0016835.1 mouse_genomes_project 1 136797809 136804415 - MGP_C57BL6NJ_P0022353 Cxcr4 protein_coding protein_coding MGP_C57BL6NJ_T0022354.1 MGP_C57BL6NJ_G0016835.1 mouse_genomes_project 1 136801235 136804418 - MGP_C57BL6NJ_P0022354 Cxcr4 protein_coding protein_coding MGP_C57BL6NJ_T0000607.1 MGP_C57BL6NJ_G0000523.1 mouse_genomes_project 1 58027833 58028186 - TEC TEC MGP_C57BL6NJ_T0020000.1 MGP_C57BL6NJ_G0016362.1 mouse_genomes_project 1 41138727 41243453 + MGP_C57BL6NJ_P0020000 Slc9a2 protein_coding protein_coding MGP_C57BL6NJ_T0020001.1 MGP_C57BL6NJ_G0016362.1 mouse_genomes_project 1 41140892 41188368 + MGP_C57BL6NJ_P0020001 Slc9a2 protein_coding protein_coding MGP_C57BL6NJ_T0020002.1 MGP_C57BL6NJ_G0016362.1 mouse_genomes_project 1 41218564 41219880 + Slc9a2 protein_coding retained_intron MGP_C57BL6NJ_T0023608.1 MGP_C57BL6NJ_G0017089.1 mouse_genomes_project 1 175956030 175983639 + MGP_C57BL6NJ_P0023608 Dpt protein_coding protein_coding MGP_C57BL6NJ_T0024447.1 MGP_C57BL6NJ_G0017293.1 mouse_genomes_project 1 195041302 195071148 - MGP_C57BL6NJ_P0024447 Fbxo28 protein_coding protein_coding MGP_C57BL6NJ_T0024448.1 MGP_C57BL6NJ_G0017293.1 mouse_genomes_project 1 195043388 195046588 - Fbxo28 protein_coding retained_intron MGP_C57BL6NJ_T0024449.1 MGP_C57BL6NJ_G0017293.1 mouse_genomes_project 1 195044663 195071130 - MGP_C57BL6NJ_P0024449 Fbxo28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024450.1 MGP_C57BL6NJ_G0017293.1 mouse_genomes_project 1 195045191 195071101 - MGP_C57BL6NJ_P0024450 Fbxo28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024451.1 MGP_C57BL6NJ_G0017293.1 mouse_genomes_project 1 195045444 195071159 - MGP_C57BL6NJ_P0024451 Fbxo28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0022118.1 MGP_C57BL6NJ_G0016786.1 mouse_genomes_project 1 118610500 118616567 - Dsel protein_coding processed_transcript MGP_C57BL6NJ_T0022119.1 MGP_C57BL6NJ_G0016786.1 mouse_genomes_project 1 118610504 118616717 - MGP_C57BL6NJ_P0022119 Dsel protein_coding protein_coding MGP_C57BL6NJ_T0022120.1 MGP_C57BL6NJ_G0016786.1 mouse_genomes_project 1 118615121 118616682 - Dsel protein_coding processed_transcript MGP_C57BL6NJ_T0022121.1 MGP_C57BL6NJ_G0016786.1 mouse_genomes_project 1 118615893 118616679 - Dsel protein_coding processed_transcript MGP_C57BL6NJ_T0022534.1 MGP_C57BL6NJ_G0016878.1 mouse_genomes_project 1 141034191 141036601 + MGP_C57BL6NJ_P0022534 Tmem81 protein_coding protein_coding MGP_C57BL6NJ_T0022535.1 MGP_C57BL6NJ_G0016878.1 mouse_genomes_project 1 141034850 141036601 + MGP_C57BL6NJ_P0022535 Tmem81 protein_coding protein_coding MGP_C57BL6NJ_T0006196.1 MGP_C57BL6NJ_G0005183.1 mouse_genomes_project 1 197920541 197925759 + 4930433J02Rik lincRNA lincRNA MGP_C57BL6NJ_T0002922.1 MGP_C57BL6NJ_G0002765.1 mouse_genomes_project 1 36181969 36183032 - Gm37335 antisense antisense MGP_C57BL6NJ_T0012557.1 MGP_C57BL6NJ_G0010602.1 mouse_genomes_project 1 149192456 149192877 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012417.1 MGP_C57BL6NJ_G0010462.1 mouse_genomes_project 1 91798708 91799509 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0023087.1 MGP_C57BL6NJ_G0016990.1 mouse_genomes_project 1 162603258 162717879 + MGP_C57BL6NJ_P0023087 Colgalt2 protein_coding protein_coding MGP_C57BL6NJ_T0023088.1 MGP_C57BL6NJ_G0016990.1 mouse_genomes_project 1 162603258 162717002 + MGP_C57BL6NJ_P0023088 Colgalt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000933.1 MGP_C57BL6NJ_G0000844.1 mouse_genomes_project 1 206962395 206964684 + TEC TEC MGP_C57BL6NJ_T0021453.1 MGP_C57BL6NJ_G0016632.1 mouse_genomes_project 1 90491354 90513985 - MGP_C57BL6NJ_P0021453 Gpr55 protein_coding protein_coding MGP_C57BL6NJ_T0021270.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82441032 82484876 + MGP_C57BL6NJ_P0021270 Acsl3 protein_coding protein_coding MGP_C57BL6NJ_T0021271.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82452587 82505408 + MGP_C57BL6NJ_P0021271 Acsl3 protein_coding protein_coding MGP_C57BL6NJ_T0021272.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82452645 82504632 + MGP_C57BL6NJ_P0021272 Acsl3 protein_coding protein_coding MGP_C57BL6NJ_T0021275.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82476379 82505412 + MGP_C57BL6NJ_P0021275 Acsl3 protein_coding protein_coding MGP_C57BL6NJ_T0021276.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82476653 82488845 + Acsl3 protein_coding retained_intron MGP_C57BL6NJ_T0021277.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82486856 82494694 + Acsl3 protein_coding retained_intron MGP_C57BL6NJ_T0021278.1 MGP_C57BL6NJ_G0016592.1 mouse_genomes_project 1 82494320 82498954 + Acsl3 protein_coding retained_intron MGP_C57BL6NJ_T0006047.1 MGP_C57BL6NJ_G0005068.1 mouse_genomes_project 1 128614466 128648038 + Celrr lincRNA lincRNA MGP_C57BL6NJ_T0006048.1 MGP_C57BL6NJ_G0005068.1 mouse_genomes_project 1 128614532 128644846 + Celrr lincRNA lincRNA MGP_C57BL6NJ_T0006049.1 MGP_C57BL6NJ_G0005068.1 mouse_genomes_project 1 128614535 128715170 + Celrr lincRNA lincRNA MGP_C57BL6NJ_T0006050.1 MGP_C57BL6NJ_G0005068.1 mouse_genomes_project 1 128614590 128615994 + Celrr lincRNA lincRNA MGP_C57BL6NJ_T0023182.1 MGP_C57BL6NJ_G0017012.1 mouse_genomes_project 1 165512539 165515815 - MGP_C57BL6NJ_P0023182 Ier5 protein_coding protein_coding MGP_C57BL6NJ_T0000694.1 MGP_C57BL6NJ_G0000610.1 mouse_genomes_project 1 95566263 95569053 + TEC TEC MGP_C57BL6NJ_T0023841.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878364 182883240 + MGP_C57BL6NJ_P0023841 Nr1i3 protein_coding protein_coding MGP_C57BL6NJ_T0023842.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878365 182883238 + MGP_C57BL6NJ_P0023842 Nr1i3 protein_coding protein_coding MGP_C57BL6NJ_T0023843.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878380 182885096 + MGP_C57BL6NJ_P0023843 Nr1i3 protein_coding protein_coding MGP_C57BL6NJ_T0023844.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878388 182883396 + Nr1i3 protein_coding retained_intron MGP_C57BL6NJ_T0023845.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878396 182883240 + MGP_C57BL6NJ_P0023845 Nr1i3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0023846.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878415 182883588 + Nr1i3 protein_coding retained_intron MGP_C57BL6NJ_T0023847.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878415 182883239 + MGP_C57BL6NJ_P0023847 Nr1i3 protein_coding protein_coding MGP_C57BL6NJ_T0023848.1 MGP_C57BL6NJ_G0017147.1 mouse_genomes_project 1 182878743 182883113 + Nr1i3 protein_coding retained_intron MGP_C57BL6NJ_T0003073.1 MGP_C57BL6NJ_G0002881.1 mouse_genomes_project 1 172063623 172069909 - 4930469G21Rik antisense antisense MGP_C57BL6NJ_T0003074.1 MGP_C57BL6NJ_G0002881.1 mouse_genomes_project 1 172065908 172069909 - 4930469G21Rik antisense antisense MGP_C57BL6NJ_T0023219.1 MGP_C57BL6NJ_G0017018.1 mouse_genomes_project 1 166154830 166199777 - MGP_C57BL6NJ_P0023219 Lhx4 protein_coding protein_coding MGP_C57BL6NJ_T0023220.1 MGP_C57BL6NJ_G0017018.1 mouse_genomes_project 1 166161428 166209449 - MGP_C57BL6NJ_P0023220 Lhx4 protein_coding protein_coding MGP_C57BL6NJ_T0005988.1 MGP_C57BL6NJ_G0005018.1 mouse_genomes_project 1 94276198 94332365 - Gm28342 lincRNA lincRNA MGP_C57BL6NJ_T0000743.1 MGP_C57BL6NJ_G0000659.1 mouse_genomes_project 1 136128258 136135711 - TEC TEC MGP_C57BL6NJ_T0012407.1 MGP_C57BL6NJ_G0010452.1 mouse_genomes_project 1 87221084 87221714 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000559.1 MGP_C57BL6NJ_G0000476.1 mouse_genomes_project 1 32228025 32229570 + TEC TEC MGP_C57BL6NJ_T0024763.1 MGP_C57BL6NJ_G0017358.1 mouse_genomes_project 1 206607197 206626112 + MGP_C57BL6NJ_P0024763 Irf6 protein_coding protein_coding MGP_C57BL6NJ_T0024764.1 MGP_C57BL6NJ_G0017358.1 mouse_genomes_project 1 206607240 206620957 + Irf6 protein_coding retained_intron MGP_C57BL6NJ_T0024765.1 MGP_C57BL6NJ_G0017358.1 mouse_genomes_project 1 206610757 206618270 + Irf6 protein_coding retained_intron MGP_C57BL6NJ_T0024767.1 MGP_C57BL6NJ_G0017358.1 mouse_genomes_project 1 206622591 206623578 + Irf6 protein_coding retained_intron MGP_C57BL6NJ_T0006197.1 MGP_C57BL6NJ_G0005184.1 mouse_genomes_project 1 197926430 197933969 + Gm37662 lincRNA lincRNA MGP_C57BL6NJ_T0012472.1 MGP_C57BL6NJ_G0010517.1 mouse_genomes_project 1 112381965 112382913 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003084.1 MGP_C57BL6NJ_G0002888.1 mouse_genomes_project 1 175963339 175974672 - Gm32569 antisense antisense MGP_C57BL6NJ_T0003085.1 MGP_C57BL6NJ_G0002888.1 mouse_genomes_project 1 175963465 176065922 - Gm32569 antisense antisense MGP_C57BL6NJ_T0017509.1 MGP_C57BL6NJ_G0015508.1 mouse_genomes_project 1 146889029 146890164 + Gm4258 processed_transcript retained_intron MGP_C57BL6NJ_T0017510.1 MGP_C57BL6NJ_G0015508.1 mouse_genomes_project 1 146889032 146999910 + Gm4258 processed_transcript lincRNA MGP_C57BL6NJ_T0000879.1 MGP_C57BL6NJ_G0000793.1 mouse_genomes_project 1 188517696 188521262 - TEC TEC MGP_C57BL6NJ_T0012131.1 MGP_C57BL6NJ_G0010176.1 mouse_genomes_project 1 1808356 1809562 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006097.1 MGP_C57BL6NJ_G0005108.1 mouse_genomes_project 1 161080390 161083928 + Gm29188 lincRNA lincRNA MGP_C57BL6NJ_T0020957.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 77956861 78032397 - MGP_C57BL6NJ_P0020957 Usp37 protein_coding protein_coding MGP_C57BL6NJ_T0020958.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 77959080 78071875 - MGP_C57BL6NJ_P0020958 Usp37 protein_coding protein_coding MGP_C57BL6NJ_T0020959.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 77960477 77992466 - Usp37 protein_coding processed_transcript MGP_C57BL6NJ_T0020960.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 77971946 78032379 - Usp37 protein_coding retained_intron MGP_C57BL6NJ_T0020961.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 78022311 78032400 - MGP_C57BL6NJ_P0020961 Usp37 protein_coding protein_coding MGP_C57BL6NJ_T0020962.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 78026465 78032385 - Usp37 protein_coding retained_intron MGP_C57BL6NJ_T0020963.1 MGP_C57BL6NJ_G0016543.1 mouse_genomes_project 1 78026549 78032877 - Usp37 protein_coding processed_transcript MGP_C57BL6NJ_T0022841.1 MGP_C57BL6NJ_G0016943.1 mouse_genomes_project 1 145094921 145095998 - MGP_C57BL6NJ_P0022841 Gpr25 protein_coding protein_coding MGP_C57BL6NJ_T0021412.1 MGP_C57BL6NJ_G0016620.1 mouse_genomes_project 1 89178848 89250027 + MGP_C57BL6NJ_P0021412 Fbxo36 protein_coding protein_coding MGP_C57BL6NJ_T0021413.1 MGP_C57BL6NJ_G0016620.1 mouse_genomes_project 1 89178860 89250027 + Fbxo36 protein_coding processed_transcript MGP_C57BL6NJ_T0021414.1 MGP_C57BL6NJ_G0016620.1 mouse_genomes_project 1 89206846 89250027 + Fbxo36 protein_coding processed_transcript MGP_C57BL6NJ_T0021415.1 MGP_C57BL6NJ_G0016620.1 mouse_genomes_project 1 89209561 89250027 + Fbxo36 protein_coding processed_transcript MGP_C57BL6NJ_T0005951.1 MGP_C57BL6NJ_G0004988.1 mouse_genomes_project 1 77056823 77336192 - 6030407O03Rik lincRNA lincRNA MGP_C57BL6NJ_T0005952.1 MGP_C57BL6NJ_G0004988.1 mouse_genomes_project 1 77056823 77198294 - 6030407O03Rik lincRNA lincRNA MGP_C57BL6NJ_T0002942.1 MGP_C57BL6NJ_G0002781.1 mouse_genomes_project 1 43753462 43754330 + Gm28782 antisense antisense MGP_C57BL6NJ_T0021303.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84225282 84302136 - MGP_C57BL6NJ_P0021303 Cul3 protein_coding protein_coding MGP_C57BL6NJ_T0021304.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84227182 84301967 - MGP_C57BL6NJ_P0021304 Cul3 protein_coding protein_coding MGP_C57BL6NJ_T0021305.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84227306 84237801 - MGP_C57BL6NJ_P0021305 Cul3 protein_coding protein_coding MGP_C57BL6NJ_T0021306.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84227601 84236926 - Cul3 protein_coding retained_intron MGP_C57BL6NJ_T0021307.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84247409 84301963 - MGP_C57BL6NJ_P0021307 Cul3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0021308.1 MGP_C57BL6NJ_G0016601.1 mouse_genomes_project 1 84249184 84301935 - MGP_C57BL6NJ_P0021308 Cul3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005938.1 MGP_C57BL6NJ_G0004980.1 mouse_genomes_project 1 75263612 75321693 - 4930556G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0012125.1 MGP_C57BL6NJ_G0010170.1 mouse_genomes_project 1 573786 574712 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003153.1 MGP_C57BL6NJ_G0002940.1 mouse_genomes_project 1 206751366 206752490 - Gm37650 antisense antisense MGP_C57BL6NJ_T0024455.1 MGP_C57BL6NJ_G0017295.1 mouse_genomes_project 1 195197872 195249658 - MGP_C57BL6NJ_P0024455 Capn2 protein_coding protein_coding MGP_C57BL6NJ_T0024456.1 MGP_C57BL6NJ_G0017295.1 mouse_genomes_project 1 195200826 195210420 - Capn2 protein_coding retained_intron MGP_C57BL6NJ_T0024457.1 MGP_C57BL6NJ_G0017295.1 mouse_genomes_project 1 195203151 195212107 - Capn2 protein_coding retained_intron MGP_C57BL6NJ_T0024458.1 MGP_C57BL6NJ_G0017295.1 mouse_genomes_project 1 195214480 195223097 - Capn2 protein_coding retained_intron MGP_C57BL6NJ_T0024459.1 MGP_C57BL6NJ_G0017295.1 mouse_genomes_project 1 195214485 195249742 - Capn2 protein_coding retained_intron MGP_C57BL6NJ_T0019824.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498131 37550215 + Inpp4a protein_coding processed_transcript MGP_C57BL6NJ_T0019825.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498157 37612163 + MGP_C57BL6NJ_P0019825 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019826.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498159 37501033 + Inpp4a protein_coding retained_intron MGP_C57BL6NJ_T0019827.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498181 37600978 + MGP_C57BL6NJ_P0019827 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019828.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498574 37609722 + MGP_C57BL6NJ_P0019828 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019829.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37498574 37610166 + MGP_C57BL6NJ_P0019829 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019830.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37559103 37609902 + MGP_C57BL6NJ_P0019830 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019831.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37559103 37605123 + MGP_C57BL6NJ_P0019831 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019832.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37559625 37609692 + MGP_C57BL6NJ_P0019832 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019833.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37570921 37605875 + MGP_C57BL6NJ_P0019833 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019834.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37570921 37605867 + MGP_C57BL6NJ_P0019834 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019835.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37570925 37605872 + MGP_C57BL6NJ_P0019835 Inpp4a protein_coding protein_coding MGP_C57BL6NJ_T0019836.1 MGP_C57BL6NJ_G0016327.1 mouse_genomes_project 1 37579188 37581592 + Inpp4a protein_coding retained_intron MGP_C57BL6NJ_T0000587.1 MGP_C57BL6NJ_G0000503.1 mouse_genomes_project 1 40467064 40470135 + TEC TEC MGP_C57BL6NJ_T0013827.1 MGP_C57BL6NJ_G0011872.1 mouse_genomes_project 2 39021319 39022045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056289.1 MGP_C57BL6NJ_G0026455.1 mouse_genomes_project 2 91982097 91983069 - MGP_C57BL6NJ_P0056289 Olfr1156 protein_coding protein_coding MGP_C57BL6NJ_T0013810.1 MGP_C57BL6NJ_G0011855.1 mouse_genomes_project 2 33980549 33980805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014010.1 MGP_C57BL6NJ_G0012055.1 mouse_genomes_project 2 105297156 105297340 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059293.1 MGP_C57BL6NJ_G0027204.1 mouse_genomes_project 2 167153891 167171629 - Ghrh protein_coding processed_transcript MGP_C57BL6NJ_T0059294.1 MGP_C57BL6NJ_G0027204.1 mouse_genomes_project 2 167153891 167170778 - MGP_C57BL6NJ_P0059294 Ghrh protein_coding protein_coding MGP_C57BL6NJ_T0059295.1 MGP_C57BL6NJ_G0027204.1 mouse_genomes_project 2 167153891 167161760 - MGP_C57BL6NJ_P0059295 Ghrh protein_coding protein_coding MGP_C57BL6NJ_T0103055.1 MGP_C57BL6NJ_G0040849.1 mouse_genomes_project 2 136918258 136919384 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0055311.1 MGP_C57BL6NJ_G0026173.1 mouse_genomes_project 2 60786377 60807741 + MGP_C57BL6NJ_P0055311 Dapl1 protein_coding protein_coding MGP_C57BL6NJ_T0055312.1 MGP_C57BL6NJ_G0026173.1 mouse_genomes_project 2 60786393 60807741 + Dapl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059498.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882205 173903216 + MGP_C57BL6NJ_P0059498 Ttpal protein_coding protein_coding MGP_C57BL6NJ_T0059499.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882213 173900704 + MGP_C57BL6NJ_P0059499 Ttpal protein_coding protein_coding MGP_C57BL6NJ_T0059500.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882240 173897057 + Ttpal protein_coding retained_intron MGP_C57BL6NJ_T0059501.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882240 173889392 + MGP_C57BL6NJ_P0059501 Ttpal protein_coding protein_coding MGP_C57BL6NJ_T0059502.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882242 173903217 + MGP_C57BL6NJ_P0059502 Ttpal protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059503.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173882454 173896101 + MGP_C57BL6NJ_P0059503 Ttpal protein_coding protein_coding MGP_C57BL6NJ_T0059504.1 MGP_C57BL6NJ_G0027249.1 mouse_genomes_project 2 173895723 173899630 + Ttpal protein_coding retained_intron MGP_C57BL6NJ_T0004043.1 MGP_C57BL6NJ_G0003606.1 mouse_genomes_project 2 3449088 3584530 + A230108P19Rik antisense antisense MGP_C57BL6NJ_T0007473.1 MGP_C57BL6NJ_G0006127.1 mouse_genomes_project 2 123441456 123457913 + D330050G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0007474.1 MGP_C57BL6NJ_G0006127.1 mouse_genomes_project 2 123441479 123457750 + D330050G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0007475.1 MGP_C57BL6NJ_G0006127.1 mouse_genomes_project 2 123441498 123446985 + D330050G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0014205.1 MGP_C57BL6NJ_G0012250.1 mouse_genomes_project 2 186161021 186161594 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054537.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31743986 31770367 + MGP_C57BL6NJ_P0054537 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054538.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755110 31759508 + Ciz1 protein_coding processed_transcript MGP_C57BL6NJ_T0054539.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755110 31759629 + MGP_C57BL6NJ_P0054539 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054540.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755161 31762223 + MGP_C57BL6NJ_P0054540 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054541.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755298 31770373 + MGP_C57BL6NJ_P0054541 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054542.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755298 31770367 + MGP_C57BL6NJ_P0054542 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054543.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755453 31773040 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054544.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755533 31757952 + Ciz1 protein_coding processed_transcript MGP_C57BL6NJ_T0054545.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755654 31762424 + MGP_C57BL6NJ_P0054545 Ciz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054546.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755856 31757088 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054547.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755905 31770373 + MGP_C57BL6NJ_P0054547 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054548.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31755910 31770368 + MGP_C57BL6NJ_P0054548 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054549.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31757445 31759615 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054550.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31759512 31763394 + MGP_C57BL6NJ_P0054550 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054551.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31759572 31764406 + MGP_C57BL6NJ_P0054551 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054552.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31762162 31763851 + Ciz1 protein_coding processed_transcript MGP_C57BL6NJ_T0054553.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31763009 31767608 + MGP_C57BL6NJ_P0054553 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0054554.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31763935 31766626 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054555.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31764417 31767070 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054556.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31766278 31770369 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054557.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31767177 31768460 + Ciz1 protein_coding retained_intron MGP_C57BL6NJ_T0054558.1 MGP_C57BL6NJ_G0026021.1 mouse_genomes_project 2 31767558 31772296 + MGP_C57BL6NJ_P0054558 Ciz1 protein_coding protein_coding MGP_C57BL6NJ_T0056188.1 MGP_C57BL6NJ_G0026366.1 mouse_genomes_project 2 89502381 89533293 + MGP_C57BL6NJ_P0056188 protein_coding protein_coding MGP_C57BL6NJ_T0013994.1 MGP_C57BL6NJ_G0012039.1 mouse_genomes_project 2 97226166 97226578 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056190.1 MGP_C57BL6NJ_G0026368.1 mouse_genomes_project 2 89542025 89542982 + MGP_C57BL6NJ_P0056190 Olfr1030 protein_coding protein_coding MGP_C57BL6NJ_T0013858.1 MGP_C57BL6NJ_G0011903.1 mouse_genomes_project 2 51994837 51995661 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013791.1 MGP_C57BL6NJ_G0011836.1 mouse_genomes_project 2 24183972 24184212 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056085.1 MGP_C57BL6NJ_G0026319.1 mouse_genomes_project 2 87983468 87994815 + protein_coding processed_transcript MGP_C57BL6NJ_T0056086.1 MGP_C57BL6NJ_G0026319.1 mouse_genomes_project 2 87992894 88000730 + MGP_C57BL6NJ_P0056086 protein_coding protein_coding MGP_C57BL6NJ_T0007532.1 MGP_C57BL6NJ_G0006175.1 mouse_genomes_project 2 161831608 161833566 - Gm26841 lincRNA lincRNA MGP_C57BL6NJ_T0059597.1 MGP_C57BL6NJ_G0027285.1 mouse_genomes_project 2 175044984 175050186 - MGP_C57BL6NJ_P0059597 Wfdc16 protein_coding protein_coding MGP_C57BL6NJ_T0101500.1 MGP_C57BL6NJ_G0039546.1 mouse_genomes_project 2 88849304 88849448 + Gm23716 snoRNA snoRNA MGP_C57BL6NJ_T0101523.1 MGP_C57BL6NJ_G0039569.1 mouse_genomes_project 2 137868242 137868314 + Snord57 snoRNA snoRNA MGP_C57BL6NJ_T0055583.1 MGP_C57BL6NJ_G0026220.1 mouse_genomes_project 2 71765832 71781098 + MGP_C57BL6NJ_P0055583 Klhl41 protein_coding protein_coding MGP_C57BL6NJ_T0058754.1 MGP_C57BL6NJ_G0027085.1 mouse_genomes_project 2 161588388 161593858 - MGP_C57BL6NJ_P0058754 Defb23 protein_coding protein_coding MGP_C57BL6NJ_T0103008.1 MGP_C57BL6NJ_G0040802.1 mouse_genomes_project 2 88815692 88816588 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059043.1 MGP_C57BL6NJ_G0027167.1 mouse_genomes_project 2 165331217 165375162 + MGP_C57BL6NJ_P0059043 Mmp24 protein_coding protein_coding MGP_C57BL6NJ_T0059044.1 MGP_C57BL6NJ_G0027167.1 mouse_genomes_project 2 165362527 165367175 + Mmp24 protein_coding retained_intron MGP_C57BL6NJ_T0001182.1 MGP_C57BL6NJ_G0001088.1 mouse_genomes_project 2 12560225 12562607 - TEC TEC MGP_C57BL6NJ_T0100181.1 MGP_C57BL6NJ_G0038227.1 mouse_genomes_project 2 26405030 26405156 - Gm25541 snRNA snRNA MGP_C57BL6NJ_T0057103.1 MGP_C57BL6NJ_G0026686.1 mouse_genomes_project 2 117646433 117647330 + MGP_C57BL6NJ_P0057103 Olfr1289 protein_coding protein_coding MGP_C57BL6NJ_T0059624.1 MGP_C57BL6NJ_G0027297.1 mouse_genomes_project 2 175222665 175226369 - Acot8 protein_coding retained_intron MGP_C57BL6NJ_T0059625.1 MGP_C57BL6NJ_G0027297.1 mouse_genomes_project 2 175222665 175238297 - MGP_C57BL6NJ_P0059625 Acot8 protein_coding protein_coding MGP_C57BL6NJ_T0059626.1 MGP_C57BL6NJ_G0027297.1 mouse_genomes_project 2 175222665 175238297 - MGP_C57BL6NJ_P0059626 Acot8 protein_coding protein_coding MGP_C57BL6NJ_T0059627.1 MGP_C57BL6NJ_G0027297.1 mouse_genomes_project 2 175225687 175238296 - MGP_C57BL6NJ_P0059627 Acot8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059628.1 MGP_C57BL6NJ_G0027297.1 mouse_genomes_project 2 175232870 175238237 - Acot8 protein_coding retained_intron MGP_C57BL6NJ_T0007553.1 MGP_C57BL6NJ_G0006193.1 mouse_genomes_project 2 173401015 173404237 - Gm14254 lincRNA lincRNA MGP_C57BL6NJ_T0010617.1 MGP_C57BL6NJ_G0008702.1 mouse_genomes_project 2 26243038 26243138 + Gm24049 miRNA miRNA MGP_C57BL6NJ_T0004116.1 MGP_C57BL6NJ_G0003664.1 mouse_genomes_project 2 38511771 38521009 + Nr5a1os antisense antisense MGP_C57BL6NJ_T0013988.1 MGP_C57BL6NJ_G0012033.1 mouse_genomes_project 2 95932664 95932832 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010560.1 MGP_C57BL6NJ_G0008645.1 mouse_genomes_project 2 8034292 8034386 + Mir466f-1 miRNA miRNA MGP_C57BL6NJ_T0014092.1 MGP_C57BL6NJ_G0012137.1 mouse_genomes_project 2 138977594 138977873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011768.1 MGP_C57BL6NJ_G0009853.1 mouse_genomes_project 2 110803327 110803621 - Gm27538 misc_RNA misc_RNA MGP_C57BL6NJ_T0054277.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558283 29566559 + MGP_C57BL6NJ_P0054277 Dolpp1 protein_coding protein_coding MGP_C57BL6NJ_T0054278.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558445 29566557 + MGP_C57BL6NJ_P0054278 Dolpp1 protein_coding protein_coding MGP_C57BL6NJ_T0054279.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558445 29566557 + MGP_C57BL6NJ_P0054279 Dolpp1 protein_coding protein_coding MGP_C57BL6NJ_T0054280.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558457 29563345 + Dolpp1 protein_coding retained_intron MGP_C57BL6NJ_T0054281.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558459 29561941 + Dolpp1 protein_coding retained_intron MGP_C57BL6NJ_T0054282.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558468 29566558 + MGP_C57BL6NJ_P0054282 Dolpp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054283.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558469 29562186 + Dolpp1 protein_coding retained_intron MGP_C57BL6NJ_T0054284.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558474 29565714 + MGP_C57BL6NJ_P0054284 Dolpp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054285.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29558483 29563843 + Dolpp1 protein_coding retained_intron MGP_C57BL6NJ_T0054286.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29561627 29566557 + Dolpp1 protein_coding processed_transcript MGP_C57BL6NJ_T0054287.1 MGP_C57BL6NJ_G0025986.1 mouse_genomes_project 2 29563450 29566018 + Dolpp1 protein_coding processed_transcript MGP_C57BL6NJ_T0001212.1 MGP_C57BL6NJ_G0001118.1 mouse_genomes_project 2 70896612 70900217 + TEC TEC MGP_C57BL6NJ_T0004161.1 MGP_C57BL6NJ_G0003696.1 mouse_genomes_project 2 75838204 75846591 + Gm13709 antisense antisense MGP_C57BL6NJ_T0056213.1 MGP_C57BL6NJ_G0026390.1 mouse_genomes_project 2 90176372 90177314 - MGP_C57BL6NJ_P0056213 Olfr1065 protein_coding protein_coding MGP_C57BL6NJ_T0013813.1 MGP_C57BL6NJ_G0011858.1 mouse_genomes_project 2 35123629 35124151 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007302.1 MGP_C57BL6NJ_G0005991.1 mouse_genomes_project 2 4875612 4876983 + Gm28641 lincRNA lincRNA MGP_C57BL6NJ_T0014026.1 MGP_C57BL6NJ_G0012071.1 mouse_genomes_project 2 109438627 109438888 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103019.1 MGP_C57BL6NJ_G0040813.1 mouse_genomes_project 2 90176372 90177313 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0053655.1 MGP_C57BL6NJ_G0025874.1 mouse_genomes_project 2 24216878 24223191 - MGP_C57BL6NJ_P0053655 Gm996 protein_coding protein_coding MGP_C57BL6NJ_T0053656.1 MGP_C57BL6NJ_G0025874.1 mouse_genomes_project 2 24216892 24223220 - MGP_C57BL6NJ_P0053656 Gm996 protein_coding protein_coding MGP_C57BL6NJ_T0053657.1 MGP_C57BL6NJ_G0025874.1 mouse_genomes_project 2 24218435 24221360 - MGP_C57BL6NJ_P0053657 Gm996 protein_coding protein_coding MGP_C57BL6NJ_T0053658.1 MGP_C57BL6NJ_G0025874.1 mouse_genomes_project 2 24221273 24221726 - MGP_C57BL6NJ_P0053658 Gm996 protein_coding protein_coding MGP_C57BL6NJ_T0057319.1 MGP_C57BL6NJ_G0026755.1 mouse_genomes_project 2 125911327 125957864 - MGP_C57BL6NJ_P0057319 Dnajc17 protein_coding protein_coding MGP_C57BL6NJ_T0057321.1 MGP_C57BL6NJ_G0026755.1 mouse_genomes_project 2 125918219 125922652 - Dnajc17 protein_coding processed_transcript MGP_C57BL6NJ_T0057322.1 MGP_C57BL6NJ_G0026755.1 mouse_genomes_project 2 125922689 125957851 - Dnajc17 protein_coding retained_intron MGP_C57BL6NJ_T0055079.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43820549 43829608 + Kynu protein_coding processed_transcript MGP_C57BL6NJ_T0055080.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43820549 43965003 + MGP_C57BL6NJ_P0055080 Kynu protein_coding protein_coding MGP_C57BL6NJ_T0055081.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43820562 43962503 + MGP_C57BL6NJ_P0055081 Kynu protein_coding protein_coding MGP_C57BL6NJ_T0055082.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43820574 43913394 + MGP_C57BL6NJ_P0055082 Kynu protein_coding protein_coding MGP_C57BL6NJ_T0055083.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43869160 43875786 + Kynu protein_coding processed_transcript MGP_C57BL6NJ_T0055084.1 MGP_C57BL6NJ_G0026132.1 mouse_genomes_project 2 43952067 43963710 + Kynu protein_coding processed_transcript MGP_C57BL6NJ_T0057722.1 MGP_C57BL6NJ_G0026827.1 mouse_genomes_project 2 129195592 129200990 + MGP_C57BL6NJ_P0057722 B2m protein_coding protein_coding MGP_C57BL6NJ_T0058606.1 MGP_C57BL6NJ_G0027041.1 mouse_genomes_project 2 157705627 157709482 - MGP_C57BL6NJ_P0058606 Cst3 protein_coding protein_coding MGP_C57BL6NJ_T0058607.1 MGP_C57BL6NJ_G0027041.1 mouse_genomes_project 2 157706377 157709357 - Cst3 protein_coding processed_transcript MGP_C57BL6NJ_T0058608.1 MGP_C57BL6NJ_G0027041.1 mouse_genomes_project 2 157706753 157709598 - MGP_C57BL6NJ_P0058608 Cst3 protein_coding protein_coding MGP_C57BL6NJ_T0004038.1 MGP_C57BL6NJ_G0003603.1 mouse_genomes_project 2 1650360 1651624 - Gm13179 antisense antisense MGP_C57BL6NJ_T0004039.1 MGP_C57BL6NJ_G0003603.1 mouse_genomes_project 2 1650664 1651624 - Gm13179 antisense antisense MGP_C57BL6NJ_T0056409.1 MGP_C57BL6NJ_G0026550.1 mouse_genomes_project 2 94877573 94878265 - Ptprj protein_coding processed_transcript MGP_C57BL6NJ_T0056410.1 MGP_C57BL6NJ_G0026550.1 mouse_genomes_project 2 94877575 94979755 - MGP_C57BL6NJ_P0056410 Ptprj protein_coding protein_coding MGP_C57BL6NJ_T0056411.1 MGP_C57BL6NJ_G0026550.1 mouse_genomes_project 2 94881430 95082234 - MGP_C57BL6NJ_P0056411 Ptprj protein_coding protein_coding MGP_C57BL6NJ_T0056412.1 MGP_C57BL6NJ_G0026550.1 mouse_genomes_project 2 94888212 94979704 - MGP_C57BL6NJ_P0056412 Ptprj protein_coding protein_coding MGP_C57BL6NJ_T0057518.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127529269 127581849 + MGP_C57BL6NJ_P0057518 protein_coding protein_coding MGP_C57BL6NJ_T0057519.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127529367 127630710 + MGP_C57BL6NJ_P0057519 protein_coding protein_coding MGP_C57BL6NJ_T0057520.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127529367 127629294 + MGP_C57BL6NJ_P0057520 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057521.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127598341 127630710 + MGP_C57BL6NJ_P0057521 protein_coding protein_coding MGP_C57BL6NJ_T0057522.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127615968 127630460 + MGP_C57BL6NJ_P0057522 protein_coding protein_coding MGP_C57BL6NJ_T0057523.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127619219 127646519 + MGP_C57BL6NJ_P0057523 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057524.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127628347 127630508 + protein_coding retained_intron MGP_C57BL6NJ_T0057525.1 MGP_C57BL6NJ_G0026793.1 mouse_genomes_project 2 127629895 127643989 + protein_coding processed_transcript MGP_C57BL6NJ_T0010595.1 MGP_C57BL6NJ_G0008680.1 mouse_genomes_project 2 8070508 8070588 + Mir466g miRNA miRNA MGP_C57BL6NJ_T0004041.1 MGP_C57BL6NJ_G0003605.1 mouse_genomes_project 2 3107039 3111546 + Gm13267 antisense antisense MGP_C57BL6NJ_T0004042.1 MGP_C57BL6NJ_G0003605.1 mouse_genomes_project 2 3107129 3110414 + Gm13267 antisense antisense MGP_C57BL6NJ_T0059984.1 MGP_C57BL6NJ_G0027374.1 mouse_genomes_project 2 184396153 184411769 + MGP_C57BL6NJ_P0059984 Rae1 protein_coding protein_coding MGP_C57BL6NJ_T0059985.1 MGP_C57BL6NJ_G0027374.1 mouse_genomes_project 2 184396160 184405475 + MGP_C57BL6NJ_P0059985 Rae1 protein_coding protein_coding MGP_C57BL6NJ_T0059986.1 MGP_C57BL6NJ_G0027374.1 mouse_genomes_project 2 184402673 184405474 + Rae1 protein_coding retained_intron MGP_C57BL6NJ_T0059987.1 MGP_C57BL6NJ_G0027374.1 mouse_genomes_project 2 184407693 184408851 + Rae1 protein_coding retained_intron MGP_C57BL6NJ_T0059988.1 MGP_C57BL6NJ_G0027374.1 mouse_genomes_project 2 184408490 184411457 + Rae1 protein_coding retained_intron MGP_C57BL6NJ_T0056961.1 MGP_C57BL6NJ_G0026642.1 mouse_genomes_project 2 110354158 110386625 - MGP_C57BL6NJ_P0056961 Depdc7 protein_coding protein_coding MGP_C57BL6NJ_T0056962.1 MGP_C57BL6NJ_G0026642.1 mouse_genomes_project 2 110354955 110355530 - Depdc7 protein_coding retained_intron MGP_C57BL6NJ_T0057499.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460317 127497042 + MGP_C57BL6NJ_P0057499 Snap23 protein_coding protein_coding MGP_C57BL6NJ_T0057500.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460337 127497042 + MGP_C57BL6NJ_P0057500 Snap23 protein_coding protein_coding MGP_C57BL6NJ_T0057501.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460343 127497042 + MGP_C57BL6NJ_P0057501 Snap23 protein_coding protein_coding MGP_C57BL6NJ_T0057502.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460367 127492579 + MGP_C57BL6NJ_P0057502 Snap23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057503.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460369 127478862 + Snap23 protein_coding retained_intron MGP_C57BL6NJ_T0057504.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460369 127480154 + MGP_C57BL6NJ_P0057504 Snap23 protein_coding protein_coding MGP_C57BL6NJ_T0057505.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127460384 127492492 + MGP_C57BL6NJ_P0057505 Snap23 protein_coding protein_coding MGP_C57BL6NJ_T0057506.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127480127 127491211 + Snap23 protein_coding retained_intron MGP_C57BL6NJ_T0057507.1 MGP_C57BL6NJ_G0026790.1 mouse_genomes_project 2 127486308 127492574 + Snap23 protein_coding processed_transcript MGP_C57BL6NJ_T0018374.1 MGP_C57BL6NJ_G0015880.1 mouse_genomes_project 2 169984355 170018523 + 4933416E03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0056133.1 MGP_C57BL6NJ_G0026334.1 mouse_genomes_project 2 88341023 88344195 + MGP_C57BL6NJ_P0056133 Prg2 protein_coding protein_coding MGP_C57BL6NJ_T0007359.1 MGP_C57BL6NJ_G0006033.1 mouse_genomes_project 2 38207275 38247153 + Gm13589 lincRNA lincRNA MGP_C57BL6NJ_T0057166.1 MGP_C57BL6NJ_G0026719.1 mouse_genomes_project 2 120106715 120160641 - MGP_C57BL6NJ_P0057166 Scg5 protein_coding protein_coding MGP_C57BL6NJ_T0057167.1 MGP_C57BL6NJ_G0026719.1 mouse_genomes_project 2 120158859 120160282 - Scg5 protein_coding processed_transcript MGP_C57BL6NJ_T0004095.1 MGP_C57BL6NJ_G0003646.1 mouse_genomes_project 2 30928761 30935898 - Gm13425 antisense antisense MGP_C57BL6NJ_T0057095.1 MGP_C57BL6NJ_G0026679.1 mouse_genomes_project 2 117423989 117424901 + MGP_C57BL6NJ_P0057095 Olfr1283 protein_coding protein_coding MGP_C57BL6NJ_T0055166.1 MGP_C57BL6NJ_G0026141.1 mouse_genomes_project 2 50457615 50629755 + MGP_C57BL6NJ_P0055166 Lypd6b protein_coding protein_coding MGP_C57BL6NJ_T0055167.1 MGP_C57BL6NJ_G0026141.1 mouse_genomes_project 2 50457658 50611890 + Lypd6b protein_coding processed_transcript MGP_C57BL6NJ_T0055168.1 MGP_C57BL6NJ_G0026141.1 mouse_genomes_project 2 50517568 50623443 + Lypd6b protein_coding processed_transcript MGP_C57BL6NJ_T0055169.1 MGP_C57BL6NJ_G0026141.1 mouse_genomes_project 2 50611794 50629755 + MGP_C57BL6NJ_P0055169 Lypd6b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099256.1 MGP_C57BL6NJ_G0037320.1 mouse_genomes_project 2 52266699 52266829 - Gm23505 scaRNA scaRNA MGP_C57BL6NJ_T0011784.1 MGP_C57BL6NJ_G0009869.1 mouse_genomes_project 2 177352794 177353141 + Gm25265 misc_RNA misc_RNA MGP_C57BL6NJ_T0058837.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448697 162476916 + MGP_C57BL6NJ_P0058837 Pofut1 protein_coding protein_coding MGP_C57BL6NJ_T0058838.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448705 162472583 + MGP_C57BL6NJ_P0058838 Pofut1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058839.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448705 162472583 + MGP_C57BL6NJ_P0058839 Pofut1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058840.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448715 162468127 + MGP_C57BL6NJ_P0058840 Pofut1 protein_coding protein_coding MGP_C57BL6NJ_T0058841.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448733 162456736 + Pofut1 protein_coding retained_intron MGP_C57BL6NJ_T0058842.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162448742 162473172 + MGP_C57BL6NJ_P0058842 Pofut1 protein_coding protein_coding MGP_C57BL6NJ_T0058843.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162463706 162473955 + MGP_C57BL6NJ_P0058843 Pofut1 protein_coding protein_coding MGP_C57BL6NJ_T0058844.1 MGP_C57BL6NJ_G0027115.1 mouse_genomes_project 2 162463796 162474732 + MGP_C57BL6NJ_P0058844 Pofut1 protein_coding protein_coding MGP_C57BL6NJ_T0057393.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751089 126823828 + MGP_C57BL6NJ_P0057393 Mga protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057394.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751098 126828409 + MGP_C57BL6NJ_P0057394 Mga protein_coding protein_coding MGP_C57BL6NJ_T0057395.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751098 126826612 + MGP_C57BL6NJ_P0057395 Mga protein_coding protein_coding MGP_C57BL6NJ_T0057396.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751098 126828409 + MGP_C57BL6NJ_P0057396 Mga protein_coding protein_coding MGP_C57BL6NJ_T0057397.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751098 126828409 + MGP_C57BL6NJ_P0057397 Mga protein_coding protein_coding MGP_C57BL6NJ_T0057398.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751102 126772380 + Mga protein_coding retained_intron MGP_C57BL6NJ_T0057399.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751118 126781121 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057400.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126751175 126819391 + MGP_C57BL6NJ_P0057400 Mga protein_coding protein_coding MGP_C57BL6NJ_T0057401.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126776105 126778515 + Mga protein_coding retained_intron MGP_C57BL6NJ_T0057402.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126789607 126793170 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057403.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126789776 126802908 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057404.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126789871 126796881 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057405.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126796590 126803650 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057406.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126797094 126803443 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057407.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126816910 126824224 + Mga protein_coding processed_transcript MGP_C57BL6NJ_T0057408.1 MGP_C57BL6NJ_G0026775.1 mouse_genomes_project 2 126819001 126820820 + Mga protein_coding retained_intron MGP_C57BL6NJ_T0059873.1 MGP_C57BL6NJ_G0027343.1 mouse_genomes_project 2 178838280 178869510 - Fam65c protein_coding processed_transcript MGP_C57BL6NJ_T0059874.1 MGP_C57BL6NJ_G0027343.1 mouse_genomes_project 2 178838282 178869510 - MGP_C57BL6NJ_P0059874 Fam65c protein_coding protein_coding MGP_C57BL6NJ_T0059875.1 MGP_C57BL6NJ_G0027343.1 mouse_genomes_project 2 178843234 178844932 - Fam65c protein_coding retained_intron MGP_C57BL6NJ_T0059876.1 MGP_C57BL6NJ_G0027343.1 mouse_genomes_project 2 178846954 178849500 - Fam65c protein_coding retained_intron MGP_C57BL6NJ_T0056679.1 MGP_C57BL6NJ_G0026586.1 mouse_genomes_project 2 97020621 97027162 + Pex16 protein_coding processed_transcript MGP_C57BL6NJ_T0056680.1 MGP_C57BL6NJ_G0026586.1 mouse_genomes_project 2 97021251 97027163 + MGP_C57BL6NJ_P0056680 Pex16 protein_coding protein_coding MGP_C57BL6NJ_T0056681.1 MGP_C57BL6NJ_G0026586.1 mouse_genomes_project 2 97021438 97025267 + Pex16 protein_coding processed_transcript MGP_C57BL6NJ_T0056682.1 MGP_C57BL6NJ_G0026586.1 mouse_genomes_project 2 97021504 97022649 + Pex16 protein_coding processed_transcript MGP_C57BL6NJ_T0055872.1 MGP_C57BL6NJ_G0026282.1 mouse_genomes_project 2 79023228 79029730 - MGP_C57BL6NJ_P0055872 Cyct protein_coding protein_coding MGP_C57BL6NJ_T0099070.1 MGP_C57BL6NJ_G0037134.1 mouse_genomes_project 2 28492305 28492440 + Gm24976 rRNA rRNA MGP_C57BL6NJ_T0059104.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165602859 165637975 - MGP_C57BL6NJ_P0059104 Fer1l4 protein_coding protein_coding MGP_C57BL6NJ_T0059105.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165602860 165608597 - Fer1l4 protein_coding retained_intron MGP_C57BL6NJ_T0059106.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165602861 165621782 - Fer1l4 protein_coding retained_intron MGP_C57BL6NJ_T0059107.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165612604 165614866 - MGP_C57BL6NJ_P0059107 Fer1l4 protein_coding protein_coding MGP_C57BL6NJ_T0059108.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165612753 165614868 - Fer1l4 protein_coding retained_intron MGP_C57BL6NJ_T0059109.1 MGP_C57BL6NJ_G0027177.1 mouse_genomes_project 2 165620156 165622517 - MGP_C57BL6NJ_P0059109 Fer1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0004117.1 MGP_C57BL6NJ_G0003665.1 mouse_genomes_project 2 38646484 38661747 + Nr6a1os antisense antisense MGP_C57BL6NJ_T0004118.1 MGP_C57BL6NJ_G0003665.1 mouse_genomes_project 2 38646568 38675467 + Nr6a1os antisense antisense MGP_C57BL6NJ_T0055313.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 60922762 61169087 + MGP_C57BL6NJ_P0055313 Tanc1 protein_coding protein_coding MGP_C57BL6NJ_T0055314.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 60922793 60960131 + Tanc1 protein_coding retained_intron MGP_C57BL6NJ_T0055315.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 60940765 60957683 + Tanc1 protein_coding retained_intron MGP_C57BL6NJ_T0055316.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 60957488 61168655 + MGP_C57BL6NJ_P0055316 Tanc1 protein_coding protein_coding MGP_C57BL6NJ_T0055317.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61008596 61168663 + MGP_C57BL6NJ_P0055317 Tanc1 protein_coding protein_coding MGP_C57BL6NJ_T0055318.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61021543 61039442 + Tanc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055319.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61058126 61141286 + Tanc1 protein_coding retained_intron MGP_C57BL6NJ_T0055320.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61086073 61089162 + Tanc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055321.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61100033 61105820 + Tanc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055322.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61125972 61129409 + Tanc1 protein_coding retained_intron MGP_C57BL6NJ_T0055323.1 MGP_C57BL6NJ_G0026174.1 mouse_genomes_project 2 61164677 61168653 + Tanc1 protein_coding retained_intron MGP_C57BL6NJ_T0059828.1 MGP_C57BL6NJ_G0027332.1 mouse_genomes_project 2 177829366 177928696 - MGP_C57BL6NJ_P0059828 Kcnb1 protein_coding protein_coding MGP_C57BL6NJ_T0004182.1 MGP_C57BL6NJ_G0003711.1 mouse_genomes_project 2 93244070 93252448 - Gm13763 antisense antisense MGP_C57BL6NJ_T0058517.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154388143 154425622 + MGP_C57BL6NJ_P0058517 Rin2 protein_coding protein_coding MGP_C57BL6NJ_T0058518.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154389389 154492146 + MGP_C57BL6NJ_P0058518 Rin2 protein_coding protein_coding MGP_C57BL6NJ_T0058519.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154389525 154492146 + MGP_C57BL6NJ_P0058519 Rin2 protein_coding protein_coding MGP_C57BL6NJ_T0058520.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154389571 154426024 + MGP_C57BL6NJ_P0058520 Rin2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058521.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154425469 154449103 + Rin2 protein_coding processed_transcript MGP_C57BL6NJ_T0058522.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154425608 154449372 + Rin2 protein_coding processed_transcript MGP_C57BL6NJ_T0058523.1 MGP_C57BL6NJ_G0027015.1 mouse_genomes_project 2 154467182 154483504 + Rin2 protein_coding processed_transcript MGP_C57BL6NJ_T0059460.1 MGP_C57BL6NJ_G0027238.1 mouse_genomes_project 2 173217156 173249070 + MGP_C57BL6NJ_P0059460 Sgk2 protein_coding protein_coding MGP_C57BL6NJ_T0059461.1 MGP_C57BL6NJ_G0027238.1 mouse_genomes_project 2 173217328 173249069 + MGP_C57BL6NJ_P0059461 Sgk2 protein_coding protein_coding MGP_C57BL6NJ_T0059462.1 MGP_C57BL6NJ_G0027238.1 mouse_genomes_project 2 173230367 173239894 + Sgk2 protein_coding retained_intron MGP_C57BL6NJ_T0058134.1 MGP_C57BL6NJ_G0026933.1 mouse_genomes_project 2 138249313 138254584 - MGP_C57BL6NJ_P0058134 Lzts3 protein_coding protein_coding MGP_C57BL6NJ_T0058135.1 MGP_C57BL6NJ_G0026933.1 mouse_genomes_project 2 138249313 138254584 - MGP_C57BL6NJ_P0058135 Lzts3 protein_coding protein_coding MGP_C57BL6NJ_T0058136.1 MGP_C57BL6NJ_G0026933.1 mouse_genomes_project 2 138249316 138261119 - MGP_C57BL6NJ_P0058136 Lzts3 protein_coding protein_coding MGP_C57BL6NJ_T0059237.1 MGP_C57BL6NJ_G0027193.1 mouse_genomes_project 2 166509820 166511151 - MGP_C57BL6NJ_P0059237 4930518I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0060021.1 MGP_C57BL6NJ_G0027386.1 mouse_genomes_project 2 185637762 185650484 + MGP_C57BL6NJ_P0060021 Npepl1 protein_coding protein_coding MGP_C57BL6NJ_T0060022.1 MGP_C57BL6NJ_G0027386.1 mouse_genomes_project 2 185638567 185647796 + MGP_C57BL6NJ_P0060022 Npepl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060023.1 MGP_C57BL6NJ_G0027386.1 mouse_genomes_project 2 185638593 185650116 + Npepl1 protein_coding retained_intron MGP_C57BL6NJ_T0060024.1 MGP_C57BL6NJ_G0027386.1 mouse_genomes_project 2 185638986 185643517 + Npepl1 protein_coding retained_intron MGP_C57BL6NJ_T0013893.1 MGP_C57BL6NJ_G0011938.1 mouse_genomes_project 2 62435668 62436288 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014168.1 MGP_C57BL6NJ_G0012213.1 mouse_genomes_project 2 165990540 165991022 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004232.1 MGP_C57BL6NJ_G0003744.1 mouse_genomes_project 2 136706737 136710835 - antisense antisense MGP_C57BL6NJ_T0007326.1 MGP_C57BL6NJ_G0006010.1 mouse_genomes_project 2 23708937 23736837 - Gm13387 lincRNA lincRNA MGP_C57BL6NJ_T0007327.1 MGP_C57BL6NJ_G0006010.1 mouse_genomes_project 2 23731583 23736837 - Gm13387 lincRNA lincRNA MGP_C57BL6NJ_T0007328.1 MGP_C57BL6NJ_G0006010.1 mouse_genomes_project 2 23735257 23736764 - Gm13387 lincRNA lincRNA MGP_C57BL6NJ_T0004290.1 MGP_C57BL6NJ_G0003788.1 mouse_genomes_project 2 165981158 165982202 - Gm14170 antisense antisense MGP_C57BL6NJ_T0014203.1 MGP_C57BL6NJ_G0012248.1 mouse_genomes_project 2 185991611 185991972 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056380.1 MGP_C57BL6NJ_G0026530.1 mouse_genomes_project 2 94152068 94157454 + MGP_C57BL6NJ_P0056380 Olfr1255 protein_coding protein_coding MGP_C57BL6NJ_T0056192.1 MGP_C57BL6NJ_G0026370.1 mouse_genomes_project 2 89569327 89570260 + MGP_C57BL6NJ_P0056192 protein_coding protein_coding MGP_C57BL6NJ_T0056803.1 MGP_C57BL6NJ_G0026611.1 mouse_genomes_project 2 107014168 107025388 - MGP_C57BL6NJ_P0056803 Rag1 protein_coding protein_coding MGP_C57BL6NJ_T0056002.1 MGP_C57BL6NJ_G0026302.1 mouse_genomes_project 2 83272301 83281624 + Dnajc10 protein_coding processed_transcript MGP_C57BL6NJ_T0056003.1 MGP_C57BL6NJ_G0026302.1 mouse_genomes_project 2 83272301 83310892 + MGP_C57BL6NJ_P0056003 Dnajc10 protein_coding protein_coding MGP_C57BL6NJ_T0056004.1 MGP_C57BL6NJ_G0026302.1 mouse_genomes_project 2 83288141 83290502 + Dnajc10 protein_coding processed_transcript MGP_C57BL6NJ_T0056005.1 MGP_C57BL6NJ_G0026302.1 mouse_genomes_project 2 83290401 83297692 + Dnajc10 protein_coding processed_transcript MGP_C57BL6NJ_T0056006.1 MGP_C57BL6NJ_G0026302.1 mouse_genomes_project 2 83304502 83307791 + Dnajc10 protein_coding processed_transcript MGP_C57BL6NJ_T0018283.1 MGP_C57BL6NJ_G0015842.1 mouse_genomes_project 2 109343048 109351249 - 4930547E08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0010725.1 MGP_C57BL6NJ_G0008810.1 mouse_genomes_project 2 192160946 192161022 + Mir3091 miRNA miRNA MGP_C57BL6NJ_T0018383.1 MGP_C57BL6NJ_G0015887.1 mouse_genomes_project 2 183221461 183227381 - 1700028P15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018384.1 MGP_C57BL6NJ_G0015887.1 mouse_genomes_project 2 183222770 183226714 - 1700028P15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018385.1 MGP_C57BL6NJ_G0015887.1 mouse_genomes_project 2 183222771 183227406 - 1700028P15Rik processed_transcript retained_intron MGP_C57BL6NJ_T0058603.1 MGP_C57BL6NJ_G0027039.1 mouse_genomes_project 2 157657889 157661481 + MGP_C57BL6NJ_P0058603 Cst9 protein_coding protein_coding MGP_C57BL6NJ_T0014179.1 MGP_C57BL6NJ_G0012224.1 mouse_genomes_project 2 170959145 170960003 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054953.1 MGP_C57BL6NJ_G0026110.1 mouse_genomes_project 2 37079729 37090688 - MGP_C57BL6NJ_P0054953 Pdcl protein_coding protein_coding MGP_C57BL6NJ_T0054954.1 MGP_C57BL6NJ_G0026110.1 mouse_genomes_project 2 37080243 37090609 - MGP_C57BL6NJ_P0054954 Pdcl protein_coding protein_coding MGP_C57BL6NJ_T0054955.1 MGP_C57BL6NJ_G0026110.1 mouse_genomes_project 2 37081774 37090545 - MGP_C57BL6NJ_P0054955 Pdcl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054956.1 MGP_C57BL6NJ_G0026110.1 mouse_genomes_project 2 37081813 37090552 - MGP_C57BL6NJ_P0054956 Pdcl protein_coding protein_coding MGP_C57BL6NJ_T0007330.1 MGP_C57BL6NJ_G0006012.1 mouse_genomes_project 2 24216893 24221562 + Gm26702 lincRNA lincRNA MGP_C57BL6NJ_T0053555.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23988986 23994780 - MGP_C57BL6NJ_P0053555 Uap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0053556.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23990586 23991828 - Uap1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053557.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23990587 23992796 - Uap1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053558.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23990591 23993226 - Uap1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053559.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23992440 23993755 - Uap1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053560.1 MGP_C57BL6NJ_G0025858.1 mouse_genomes_project 2 23993215 23994713 - Uap1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053436.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639762 23648289 + MGP_C57BL6NJ_P0053436 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053437.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639780 23645970 + MGP_C57BL6NJ_P0053437 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053438.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639786 23648288 + MGP_C57BL6NJ_P0053438 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053439.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639791 23648289 + MGP_C57BL6NJ_P0053439 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053440.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639810 23642283 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0053441.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639814 23640504 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0053442.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639820 23648289 + MGP_C57BL6NJ_P0053442 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053443.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639820 23648289 + MGP_C57BL6NJ_P0053443 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053444.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639832 23644464 + MGP_C57BL6NJ_P0053444 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053445.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639842 23648289 + MGP_C57BL6NJ_P0053445 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053446.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639863 23648289 + MGP_C57BL6NJ_P0053446 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053447.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639875 23648289 + MGP_C57BL6NJ_P0053447 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053448.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23639875 23648036 + MGP_C57BL6NJ_P0053448 Nsmf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053449.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23641287 23642755 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0053450.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23642554 23648289 + MGP_C57BL6NJ_P0053450 Nsmf protein_coding protein_coding MGP_C57BL6NJ_T0053451.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23642983 23645067 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0053452.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23645543 23646515 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0053453.1 MGP_C57BL6NJ_G0025835.1 mouse_genomes_project 2 23646236 23647117 + Nsmf protein_coding retained_intron MGP_C57BL6NJ_T0007597.1 MGP_C57BL6NJ_G0006230.1 mouse_genomes_project 2 183595246 183597634 + Gm14275 lincRNA lincRNA MGP_C57BL6NJ_T0058628.1 MGP_C57BL6NJ_G0027050.1 mouse_genomes_project 2 159283257 159333001 + MGP_C57BL6NJ_P0058628 Gm10130 protein_coding protein_coding MGP_C57BL6NJ_T0007387.1 MGP_C57BL6NJ_G0006058.1 mouse_genomes_project 2 69005542 69054672 - Gm13598 lincRNA lincRNA MGP_C57BL6NJ_T0059877.1 MGP_C57BL6NJ_G0027344.1 mouse_genomes_project 2 178963769 178984312 + MGP_C57BL6NJ_P0059877 Pard6b protein_coding protein_coding MGP_C57BL6NJ_T0056194.1 MGP_C57BL6NJ_G0026372.1 mouse_genomes_project 2 89625120 89653786 - MGP_C57BL6NJ_P0056194 protein_coding protein_coding MGP_C57BL6NJ_T0014150.1 MGP_C57BL6NJ_G0012195.1 mouse_genomes_project 2 160870526 160871665 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055762.1 MGP_C57BL6NJ_G0026253.1 mouse_genomes_project 2 75733839 75739386 + MGP_C57BL6NJ_P0055762 Sp9 protein_coding protein_coding MGP_C57BL6NJ_T0055763.1 MGP_C57BL6NJ_G0026253.1 mouse_genomes_project 2 75733880 75746891 + Sp9 protein_coding processed_transcript MGP_C57BL6NJ_T0055739.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74648285 74809415 + MGP_C57BL6NJ_P0055739 Zak protein_coding protein_coding MGP_C57BL6NJ_T0055740.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74648376 74772753 + MGP_C57BL6NJ_P0055740 Zak protein_coding protein_coding MGP_C57BL6NJ_T0055741.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74648412 74764487 + Zak protein_coding retained_intron MGP_C57BL6NJ_T0055742.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74648425 74755107 + Zak protein_coding retained_intron MGP_C57BL6NJ_T0055743.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74648442 74729611 + Zak protein_coding retained_intron MGP_C57BL6NJ_T0055744.1 MGP_C57BL6NJ_G0026248.1 mouse_genomes_project 2 74660921 74720390 + MGP_C57BL6NJ_P0055744 Zak protein_coding protein_coding MGP_C57BL6NJ_T0053690.1 MGP_C57BL6NJ_G0025884.1 mouse_genomes_project 2 24380228 24381211 + MGP_C57BL6NJ_P0053690 Bmyc protein_coding protein_coding MGP_C57BL6NJ_T0057810.1 MGP_C57BL6NJ_G0026850.1 mouse_genomes_project 2 132795068 132797861 + MGP_C57BL6NJ_P0057810 Gm9913 protein_coding protein_coding MGP_C57BL6NJ_T0055813.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77061585 77125590 - MGP_C57BL6NJ_P0055813 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0055814.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77061628 77125590 - MGP_C57BL6NJ_P0055814 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0055815.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77061635 77074401 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055816.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77062627 77125573 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055817.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77063334 77124865 - MGP_C57BL6NJ_P0055817 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0055818.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77073203 77126021 - MGP_C57BL6NJ_P0055818 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0055819.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77080088 77125159 - MGP_C57BL6NJ_P0055819 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0055820.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77089955 77097492 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055821.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77090581 77126077 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055822.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77093632 77094390 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055823.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77093925 77125558 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055824.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77112624 77125522 - Lnpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055825.1 MGP_C57BL6NJ_G0026262.1 mouse_genomes_project 2 77112889 77125536 - MGP_C57BL6NJ_P0055825 Lnpk1 protein_coding protein_coding MGP_C57BL6NJ_T0013948.1 MGP_C57BL6NJ_G0011993.1 mouse_genomes_project 2 83867702 83868830 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014012.1 MGP_C57BL6NJ_G0012057.1 mouse_genomes_project 2 105679903 105680690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013841.1 MGP_C57BL6NJ_G0011886.1 mouse_genomes_project 2 45155117 45157927 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007367.1 MGP_C57BL6NJ_G0006040.1 mouse_genomes_project 2 48643014 49068719 - lincRNA lincRNA MGP_C57BL6NJ_T0058860.1 MGP_C57BL6NJ_G0027121.1 mouse_genomes_project 2 162918188 162941709 + MGP_C57BL6NJ_P0058860 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058861.1 MGP_C57BL6NJ_G0027121.1 mouse_genomes_project 2 162920690 162921737 + protein_coding retained_intron MGP_C57BL6NJ_T0018393.1 MGP_C57BL6NJ_G0015892.1 mouse_genomes_project 2 192718194 192729196 - Gm14343 processed_transcript processed_transcript MGP_C57BL6NJ_T0059536.1 MGP_C57BL6NJ_G0027260.1 mouse_genomes_project 2 174489985 174497480 - MGP_C57BL6NJ_P0059536 Kcns1 protein_coding protein_coding MGP_C57BL6NJ_T0058756.1 MGP_C57BL6NJ_G0027087.1 mouse_genomes_project 2 161616483 161620906 - MGP_C57BL6NJ_P0058756 Defb22 protein_coding protein_coding MGP_C57BL6NJ_T0013950.1 MGP_C57BL6NJ_G0011995.1 mouse_genomes_project 2 83927665 83928280 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013911.1 MGP_C57BL6NJ_G0011956.1 mouse_genomes_project 2 71370320 71370823 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004294.1 MGP_C57BL6NJ_G0003792.1 mouse_genomes_project 2 168571871 168572782 - Gm14205 antisense antisense MGP_C57BL6NJ_T0053642.1 MGP_C57BL6NJ_G0025871.1 mouse_genomes_project 2 24198154 24202390 + MGP_C57BL6NJ_P0053642 Edf1 protein_coding protein_coding MGP_C57BL6NJ_T0053643.1 MGP_C57BL6NJ_G0025871.1 mouse_genomes_project 2 24198178 24201669 + Edf1 protein_coding processed_transcript MGP_C57BL6NJ_T0053644.1 MGP_C57BL6NJ_G0025871.1 mouse_genomes_project 2 24198204 24201572 + Edf1 protein_coding processed_transcript MGP_C57BL6NJ_T0053645.1 MGP_C57BL6NJ_G0025871.1 mouse_genomes_project 2 24198446 24202169 + Edf1 protein_coding processed_transcript MGP_C57BL6NJ_T0053646.1 MGP_C57BL6NJ_G0025871.1 mouse_genomes_project 2 24200892 24202390 + Edf1 protein_coding processed_transcript MGP_C57BL6NJ_T0102465.1 MGP_C57BL6NJ_G0040354.1 mouse_genomes_project 2 121045435 121046322 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0055523.1 MGP_C57BL6NJ_G0026205.1 mouse_genomes_project 2 69282034 69303182 + MGP_C57BL6NJ_P0055523 Gm21830 protein_coding protein_coding MGP_C57BL6NJ_T0007464.1 MGP_C57BL6NJ_G0006121.1 mouse_genomes_project 2 121563217 121565454 + Gm28493 lincRNA lincRNA MGP_C57BL6NJ_T0056309.1 MGP_C57BL6NJ_G0026474.1 mouse_genomes_project 2 92601987 92605070 - MGP_C57BL6NJ_P0056309 protein_coding protein_coding MGP_C57BL6NJ_T0056310.1 MGP_C57BL6NJ_G0026474.1 mouse_genomes_project 2 92602859 92605053 - protein_coding processed_transcript MGP_C57BL6NJ_T0058100.1 MGP_C57BL6NJ_G0026921.1 mouse_genomes_project 2 137989988 137996833 - MGP_C57BL6NJ_P0058100 Cpxm1 protein_coding protein_coding MGP_C57BL6NJ_T0058101.1 MGP_C57BL6NJ_G0026921.1 mouse_genomes_project 2 137989989 137992490 - Cpxm1 protein_coding retained_intron MGP_C57BL6NJ_T0100208.1 MGP_C57BL6NJ_G0038254.1 mouse_genomes_project 2 123825897 123826061 + Gm25189 snRNA snRNA MGP_C57BL6NJ_T0011750.1 MGP_C57BL6NJ_G0009835.1 mouse_genomes_project 2 18875717 18875806 + Gm27446 misc_RNA misc_RNA MGP_C57BL6NJ_T0059218.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166236331 166381706 + MGP_C57BL6NJ_P0059218 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059219.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166236331 166403588 + MGP_C57BL6NJ_P0059219 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059220.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166236331 166403590 + MGP_C57BL6NJ_P0059220 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059221.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166333278 166402406 + MGP_C57BL6NJ_P0059221 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059222.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166333278 166402401 + MGP_C57BL6NJ_P0059222 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059223.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166354772 166402182 + Dlgap4 protein_coding retained_intron MGP_C57BL6NJ_T0059224.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166354783 166382790 + MGP_C57BL6NJ_P0059224 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059225.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166354786 166382627 + MGP_C57BL6NJ_P0059225 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059226.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166354788 166402071 + MGP_C57BL6NJ_P0059226 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059227.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166354796 166402130 + MGP_C57BL6NJ_P0059227 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059228.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166355218 166403590 + MGP_C57BL6NJ_P0059228 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059229.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166382423 166403597 + MGP_C57BL6NJ_P0059229 Dlgap4 protein_coding protein_coding MGP_C57BL6NJ_T0059230.1 MGP_C57BL6NJ_G0027190.1 mouse_genomes_project 2 166399171 166402006 + Dlgap4 protein_coding processed_transcript MGP_C57BL6NJ_T0004288.1 MGP_C57BL6NJ_G0003786.1 mouse_genomes_project 2 165387357 165388523 + Gm16098 antisense antisense MGP_C57BL6NJ_T0013755.1 MGP_C57BL6NJ_G0011800.1 mouse_genomes_project 2 12970929 12972013 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007324.1 MGP_C57BL6NJ_G0006008.1 mouse_genomes_project 2 22829073 22829606 + Gm13411 lincRNA lincRNA MGP_C57BL6NJ_T0058551.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154856601 155142263 - MGP_C57BL6NJ_P0058551 Ralgapa2 protein_coding protein_coding MGP_C57BL6NJ_T0058552.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154860682 155074865 - MGP_C57BL6NJ_P0058552 Ralgapa2 protein_coding protein_coding MGP_C57BL6NJ_T0058553.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154861490 154878089 - Ralgapa2 protein_coding processed_transcript MGP_C57BL6NJ_T0058554.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154864905 155142158 - MGP_C57BL6NJ_P0058554 Ralgapa2 protein_coding protein_coding MGP_C57BL6NJ_T0058555.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154875277 155012830 - MGP_C57BL6NJ_P0058555 Ralgapa2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058556.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154936946 155142158 - MGP_C57BL6NJ_P0058556 Ralgapa2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058557.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 154985815 155033889 - Ralgapa2 protein_coding retained_intron MGP_C57BL6NJ_T0058558.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 155032440 155040470 - Ralgapa2 protein_coding retained_intron MGP_C57BL6NJ_T0058559.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 155047671 155142170 - Ralgapa2 protein_coding retained_intron MGP_C57BL6NJ_T0058560.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 155057034 155142263 - Ralgapa2 protein_coding retained_intron MGP_C57BL6NJ_T0058561.1 MGP_C57BL6NJ_G0027020.1 mouse_genomes_project 2 155112414 155142285 - Ralgapa2 protein_coding retained_intron MGP_C57BL6NJ_T0059321.1 MGP_C57BL6NJ_G0027209.1 mouse_genomes_project 2 167609155 167769216 + MGP_C57BL6NJ_P0059321 Ctnnbl1 protein_coding protein_coding MGP_C57BL6NJ_T0059322.1 MGP_C57BL6NJ_G0027209.1 mouse_genomes_project 2 167665851 167684169 + Ctnnbl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059323.1 MGP_C57BL6NJ_G0027209.1 mouse_genomes_project 2 167667267 167695248 + Ctnnbl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059324.1 MGP_C57BL6NJ_G0027209.1 mouse_genomes_project 2 167667300 167714219 + Ctnnbl1 protein_coding processed_transcript MGP_C57BL6NJ_T0058265.1 MGP_C57BL6NJ_G0026957.1 mouse_genomes_project 2 139636200 139642487 + MGP_C57BL6NJ_P0058265 Prnd protein_coding protein_coding MGP_C57BL6NJ_T0058266.1 MGP_C57BL6NJ_G0026957.1 mouse_genomes_project 2 139636201 139642487 + MGP_C57BL6NJ_P0058266 Prnd protein_coding protein_coding MGP_C57BL6NJ_T0058267.1 MGP_C57BL6NJ_G0026957.1 mouse_genomes_project 2 139636201 139642487 + MGP_C57BL6NJ_P0058267 Prnd protein_coding protein_coding MGP_C57BL6NJ_T0058268.1 MGP_C57BL6NJ_G0026957.1 mouse_genomes_project 2 139636376 139642487 + MGP_C57BL6NJ_P0058268 Prnd protein_coding protein_coding MGP_C57BL6NJ_T0060045.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185966377 185978076 + MGP_C57BL6NJ_P0060045 Nelfcd protein_coding protein_coding MGP_C57BL6NJ_T0060046.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185966424 185978076 + MGP_C57BL6NJ_P0060046 Nelfcd protein_coding protein_coding MGP_C57BL6NJ_T0060047.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185966453 185973246 + Nelfcd protein_coding processed_transcript MGP_C57BL6NJ_T0060048.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185973965 185975487 + Nelfcd protein_coding retained_intron MGP_C57BL6NJ_T0060049.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185975253 185976522 + Nelfcd protein_coding retained_intron MGP_C57BL6NJ_T0060050.1 MGP_C57BL6NJ_G0027389.1 mouse_genomes_project 2 185976935 185977971 + Nelfcd protein_coding retained_intron MGP_C57BL6NJ_T0056386.1 MGP_C57BL6NJ_G0026534.1 mouse_genomes_project 2 94276771 94280199 + MGP_C57BL6NJ_P0056386 Olfr1258 protein_coding protein_coding MGP_C57BL6NJ_T0056387.1 MGP_C57BL6NJ_G0026534.1 mouse_genomes_project 2 94279263 94280199 + MGP_C57BL6NJ_P0056387 Olfr1258 protein_coding protein_coding MGP_C57BL6NJ_T0057969.1 MGP_C57BL6NJ_G0026888.1 mouse_genomes_project 2 135143176 135194299 - MGP_C57BL6NJ_P0057969 Nphp1 protein_coding protein_coding MGP_C57BL6NJ_T0057970.1 MGP_C57BL6NJ_G0026888.1 mouse_genomes_project 2 135143178 135146980 - Nphp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057971.1 MGP_C57BL6NJ_G0026888.1 mouse_genomes_project 2 135143180 135194342 - MGP_C57BL6NJ_P0057971 Nphp1 protein_coding protein_coding MGP_C57BL6NJ_T0057972.1 MGP_C57BL6NJ_G0026888.1 mouse_genomes_project 2 135148054 135156285 - Nphp1 protein_coding retained_intron MGP_C57BL6NJ_T0100211.1 MGP_C57BL6NJ_G0038257.1 mouse_genomes_project 2 128081685 128081791 - Gm23858 snRNA snRNA MGP_C57BL6NJ_T0059453.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173171112 173202462 + L3mbtl1 protein_coding retained_intron MGP_C57BL6NJ_T0059454.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173171114 173204963 + MGP_C57BL6NJ_P0059454 L3mbtl1 protein_coding protein_coding MGP_C57BL6NJ_T0059455.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173171115 173177099 + L3mbtl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059456.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173171115 173177099 + MGP_C57BL6NJ_P0059456 L3mbtl1 protein_coding protein_coding MGP_C57BL6NJ_T0059457.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173171140 173175457 + L3mbtl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059458.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173176216 173177751 + L3mbtl1 protein_coding processed_transcript MGP_C57BL6NJ_T0059459.1 MGP_C57BL6NJ_G0027237.1 mouse_genomes_project 2 173176216 173177751 + MGP_C57BL6NJ_P0059459 L3mbtl1 protein_coding protein_coding MGP_C57BL6NJ_T0058835.1 MGP_C57BL6NJ_G0027114.1 mouse_genomes_project 2 162432036 162448591 - MGP_C57BL6NJ_P0058835 Plagl2 protein_coding protein_coding MGP_C57BL6NJ_T0058836.1 MGP_C57BL6NJ_G0027114.1 mouse_genomes_project 2 162432049 162443600 - MGP_C57BL6NJ_P0058836 Plagl2 protein_coding protein_coding MGP_C57BL6NJ_T0103046.1 MGP_C57BL6NJ_G0040840.1 mouse_genomes_project 2 94877595 94910642 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059661.1 MGP_C57BL6NJ_G0027305.1 mouse_genomes_project 2 175344255 175364140 - MGP_C57BL6NJ_P0059661 Zfp335 protein_coding protein_coding MGP_C57BL6NJ_T0059662.1 MGP_C57BL6NJ_G0027305.1 mouse_genomes_project 2 175344255 175364140 - MGP_C57BL6NJ_P0059662 Zfp335 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059663.1 MGP_C57BL6NJ_G0027305.1 mouse_genomes_project 2 175354902 175360048 - MGP_C57BL6NJ_P0059663 Zfp335 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057358.1 MGP_C57BL6NJ_G0026768.1 mouse_genomes_project 2 126420922 126455897 + MGP_C57BL6NJ_P0057358 Nusap1 protein_coding protein_coding MGP_C57BL6NJ_T0057359.1 MGP_C57BL6NJ_G0026768.1 mouse_genomes_project 2 126421318 126441364 + Nusap1 protein_coding processed_transcript MGP_C57BL6NJ_T0057360.1 MGP_C57BL6NJ_G0026768.1 mouse_genomes_project 2 126421341 126456977 + MGP_C57BL6NJ_P0057360 Nusap1 protein_coding protein_coding MGP_C57BL6NJ_T0057361.1 MGP_C57BL6NJ_G0026768.1 mouse_genomes_project 2 126421353 126436282 + Nusap1 protein_coding processed_transcript MGP_C57BL6NJ_T0010596.1 MGP_C57BL6NJ_G0008681.1 mouse_genomes_project 2 8070804 8070885 + Mir466h miRNA miRNA MGP_C57BL6NJ_T0013986.1 MGP_C57BL6NJ_G0012031.1 mouse_genomes_project 2 95257556 95257904 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053410.1 MGP_C57BL6NJ_G0025831.1 mouse_genomes_project 2 23520019 23530296 + MGP_C57BL6NJ_P0053410 Zmynd19 protein_coding protein_coding MGP_C57BL6NJ_T0007340.1 MGP_C57BL6NJ_G0006019.1 mouse_genomes_project 2 29720412 29724664 + Gm14487 lincRNA lincRNA MGP_C57BL6NJ_T0014115.1 MGP_C57BL6NJ_G0012160.1 mouse_genomes_project 2 150977963 150978893 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014146.1 MGP_C57BL6NJ_G0012191.1 mouse_genomes_project 2 159926358 159926715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011776.1 MGP_C57BL6NJ_G0009861.1 mouse_genomes_project 2 150787553 150787857 + Gm23179 misc_RNA misc_RNA MGP_C57BL6NJ_T0004276.1 MGP_C57BL6NJ_G0003775.1 mouse_genomes_project 2 161017960 161022415 - Gm14154 antisense antisense MGP_C57BL6NJ_T0102993.1 MGP_C57BL6NJ_G0040787.1 mouse_genomes_project 2 20892853 20893522 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058130.1 MGP_C57BL6NJ_G0026931.1 mouse_genomes_project 2 138197861 138244840 - MGP_C57BL6NJ_P0058130 Ubox5 protein_coding protein_coding MGP_C57BL6NJ_T0058131.1 MGP_C57BL6NJ_G0026931.1 mouse_genomes_project 2 138209931 138244829 - MGP_C57BL6NJ_P0058131 Ubox5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060120.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192066958 192071760 + MGP_C57BL6NJ_P0060120 Adrm1 protein_coding protein_coding MGP_C57BL6NJ_T0060121.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067068 192067913 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0060122.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067079 192071758 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0060123.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067079 192068755 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0060124.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067087 192071609 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0060125.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067132 192071760 + Adrm1 protein_coding processed_transcript MGP_C57BL6NJ_T0060126.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192067627 192071758 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0060127.1 MGP_C57BL6NJ_G0027409.1 mouse_genomes_project 2 192070828 192071756 + Adrm1 protein_coding retained_intron MGP_C57BL6NJ_T0054994.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37553940 38065848 - MGP_C57BL6NJ_P0054994 Dennd1a protein_coding protein_coding MGP_C57BL6NJ_T0054995.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37556021 37607583 - MGP_C57BL6NJ_P0054995 Dennd1a protein_coding protein_coding MGP_C57BL6NJ_T0054996.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37572058 38065863 - MGP_C57BL6NJ_P0054996 Dennd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054997.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37693365 38065850 - MGP_C57BL6NJ_P0054997 Dennd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054998.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37693410 38065661 - MGP_C57BL6NJ_P0054998 Dennd1a protein_coding protein_coding MGP_C57BL6NJ_T0054999.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37789024 37926755 - Dennd1a protein_coding retained_intron MGP_C57BL6NJ_T0055000.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37808410 38065831 - MGP_C57BL6NJ_P0055000 Dennd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055001.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37885530 38065691 - MGP_C57BL6NJ_P0055001 Dennd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055002.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37919924 38014058 - Dennd1a protein_coding retained_intron MGP_C57BL6NJ_T0055003.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 37924411 37928493 - Dennd1a protein_coding retained_intron MGP_C57BL6NJ_T0055004.1 MGP_C57BL6NJ_G0026118.1 mouse_genomes_project 2 38008000 38065687 - Dennd1a protein_coding retained_intron MGP_C57BL6NJ_T0059605.1 MGP_C57BL6NJ_G0027291.1 mouse_genomes_project 2 175135634 175138308 + MGP_C57BL6NJ_P0059605 Spint5 protein_coding protein_coding MGP_C57BL6NJ_T0059606.1 MGP_C57BL6NJ_G0027291.1 mouse_genomes_project 2 175135634 175138308 + MGP_C57BL6NJ_P0059606 Spint5 protein_coding protein_coding MGP_C57BL6NJ_T0059677.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175464690 175499081 - MGP_C57BL6NJ_P0059677 Ncoa5 protein_coding protein_coding MGP_C57BL6NJ_T0059678.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175464693 175499031 - MGP_C57BL6NJ_P0059678 Ncoa5 protein_coding protein_coding MGP_C57BL6NJ_T0059679.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175464696 175499002 - MGP_C57BL6NJ_P0059679 Ncoa5 protein_coding protein_coding MGP_C57BL6NJ_T0059680.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175467014 175468997 - Ncoa5 protein_coding retained_intron MGP_C57BL6NJ_T0059681.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175474451 175499017 - Ncoa5 protein_coding retained_intron MGP_C57BL6NJ_T0059682.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175477328 175499043 - MGP_C57BL6NJ_P0059682 Ncoa5 protein_coding protein_coding MGP_C57BL6NJ_T0059683.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175487003 175487545 - Ncoa5 protein_coding processed_transcript MGP_C57BL6NJ_T0059684.1 MGP_C57BL6NJ_G0027308.1 mouse_genomes_project 2 175487273 175499001 - Ncoa5 protein_coding retained_intron MGP_C57BL6NJ_T0056346.1 MGP_C57BL6NJ_G0026506.1 mouse_genomes_project 2 93500793 93501729 - MGP_C57BL6NJ_P0056346 Olfr1225 protein_coding protein_coding MGP_C57BL6NJ_T0054805.1 MGP_C57BL6NJ_G0026061.1 mouse_genomes_project 2 34433903 34456490 - MGP_C57BL6NJ_P0054805 Psmd5 protein_coding protein_coding MGP_C57BL6NJ_T0054806.1 MGP_C57BL6NJ_G0026061.1 mouse_genomes_project 2 34436261 34456461 - Psmd5 protein_coding retained_intron MGP_C57BL6NJ_T0054807.1 MGP_C57BL6NJ_G0026061.1 mouse_genomes_project 2 34436602 34441851 - MGP_C57BL6NJ_P0054807 Psmd5 protein_coding protein_coding MGP_C57BL6NJ_T0054808.1 MGP_C57BL6NJ_G0026061.1 mouse_genomes_project 2 34452466 34460496 - Psmd5 protein_coding processed_transcript MGP_C57BL6NJ_T0054809.1 MGP_C57BL6NJ_G0026061.1 mouse_genomes_project 2 34456635 34457738 - Psmd5 protein_coding processed_transcript MGP_C57BL6NJ_T0053989.1 MGP_C57BL6NJ_G0025938.1 mouse_genomes_project 2 27422169 27426016 - 1700007K13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0053990.1 MGP_C57BL6NJ_G0025938.1 mouse_genomes_project 2 27422169 27426496 - MGP_C57BL6NJ_P0053990 1700007K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0053991.1 MGP_C57BL6NJ_G0025938.1 mouse_genomes_project 2 27422516 27426480 - MGP_C57BL6NJ_P0053991 1700007K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0103011.1 MGP_C57BL6NJ_G0040805.1 mouse_genomes_project 2 89103964 89104909 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101534.1 MGP_C57BL6NJ_G0039580.1 mouse_genomes_project 2 160408495 160408631 - Gm23261 snoRNA snoRNA MGP_C57BL6NJ_T0010556.1 MGP_C57BL6NJ_G0008641.1 mouse_genomes_project 2 6711887 6711964 - Gm23963 miRNA miRNA MGP_C57BL6NJ_T0059525.1 MGP_C57BL6NJ_G0027257.1 mouse_genomes_project 2 174332995 174372137 + MGP_C57BL6NJ_P0059525 Pabpc1l protein_coding protein_coding MGP_C57BL6NJ_T0059526.1 MGP_C57BL6NJ_G0027257.1 mouse_genomes_project 2 174342281 174353188 + Pabpc1l protein_coding processed_transcript MGP_C57BL6NJ_T0059527.1 MGP_C57BL6NJ_G0027257.1 mouse_genomes_project 2 174347889 174353415 + Pabpc1l protein_coding processed_transcript MGP_C57BL6NJ_T0059528.1 MGP_C57BL6NJ_G0027257.1 mouse_genomes_project 2 174369608 174371766 + Pabpc1l protein_coding processed_transcript MGP_C57BL6NJ_T0058562.1 MGP_C57BL6NJ_G0027021.1 mouse_genomes_project 2 155511554 155642932 + MGP_C57BL6NJ_P0058562 Kiz protein_coding protein_coding MGP_C57BL6NJ_T0058563.1 MGP_C57BL6NJ_G0027021.1 mouse_genomes_project 2 155511599 155547819 + MGP_C57BL6NJ_P0058563 Kiz protein_coding protein_coding MGP_C57BL6NJ_T0058564.1 MGP_C57BL6NJ_G0027021.1 mouse_genomes_project 2 155619202 155642927 + Kiz protein_coding retained_intron MGP_C57BL6NJ_T0056312.1 MGP_C57BL6NJ_G0026476.1 mouse_genomes_project 2 92662547 92663483 + MGP_C57BL6NJ_P0056312 Olfr1184 protein_coding protein_coding MGP_C57BL6NJ_T0059110.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652612 165656939 + Spag4 protein_coding retained_intron MGP_C57BL6NJ_T0059111.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652635 165658055 + Spag4 protein_coding retained_intron MGP_C57BL6NJ_T0059112.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652664 165656662 + Spag4 protein_coding retained_intron MGP_C57BL6NJ_T0059113.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652681 165656939 + MGP_C57BL6NJ_P0059113 Spag4 protein_coding protein_coding MGP_C57BL6NJ_T0059114.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652874 165654760 + MGP_C57BL6NJ_P0059114 Spag4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059115.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165652990 165654966 + MGP_C57BL6NJ_P0059115 Spag4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059116.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165653179 165655488 + MGP_C57BL6NJ_P0059116 Spag4 protein_coding protein_coding MGP_C57BL6NJ_T0059117.1 MGP_C57BL6NJ_G0027178.1 mouse_genomes_project 2 165654172 165656816 + Spag4 protein_coding processed_transcript MGP_C57BL6NJ_T0001222.1 MGP_C57BL6NJ_G0001128.1 mouse_genomes_project 2 108884469 108887873 - TEC TEC MGP_C57BL6NJ_T0057318.1 MGP_C57BL6NJ_G0026754.1 mouse_genomes_project 2 125906601 125911218 + MGP_C57BL6NJ_P0057318 Gchfr protein_coding protein_coding MGP_C57BL6NJ_T0014192.1 MGP_C57BL6NJ_G0012237.1 mouse_genomes_project 2 177813160 177813716 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059342.1 MGP_C57BL6NJ_G0027214.1 mouse_genomes_project 2 168096483 168146632 - MGP_C57BL6NJ_P0059342 D630003M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0059343.1 MGP_C57BL6NJ_G0027214.1 mouse_genomes_project 2 168101151 168146632 - MGP_C57BL6NJ_P0059343 D630003M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0059344.1 MGP_C57BL6NJ_G0027214.1 mouse_genomes_project 2 168110743 168146632 - MGP_C57BL6NJ_P0059344 D630003M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0058887.1 MGP_C57BL6NJ_G0027131.1 mouse_genomes_project 2 163474349 163482360 + MGP_C57BL6NJ_P0058887 Bpifa3 protein_coding protein_coding MGP_C57BL6NJ_T0058888.1 MGP_C57BL6NJ_G0027131.1 mouse_genomes_project 2 163474349 163482360 + MGP_C57BL6NJ_P0058888 Bpifa3 protein_coding protein_coding MGP_C57BL6NJ_T0058889.1 MGP_C57BL6NJ_G0027131.1 mouse_genomes_project 2 163479551 163481623 + MGP_C57BL6NJ_P0058889 Bpifa3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060330.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625592 193626831 - MGP_C57BL6NJ_P0060330 Uckl1 protein_coding protein_coding MGP_C57BL6NJ_T0060331.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625595 193626241 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060332.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625606 193638412 - MGP_C57BL6NJ_P0060332 Uckl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060333.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625608 193626325 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060334.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625674 193628984 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060335.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193625754 193638408 - MGP_C57BL6NJ_P0060335 Uckl1 protein_coding protein_coding MGP_C57BL6NJ_T0060336.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626057 193629571 - MGP_C57BL6NJ_P0060336 Uckl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060337.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626096 193629571 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060338.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626207 193627819 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060339.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626293 193629580 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060340.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626449 193630920 - Uckl1 protein_coding processed_transcript MGP_C57BL6NJ_T0060341.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193626804 193628602 - Uckl1 protein_coding processed_transcript MGP_C57BL6NJ_T0060342.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193628768 193630944 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060343.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193629696 193641332 - MGP_C57BL6NJ_P0060343 Uckl1 protein_coding protein_coding MGP_C57BL6NJ_T0060344.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193629741 193631278 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0060345.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193629752 193635395 - MGP_C57BL6NJ_P0060345 Uckl1 protein_coding protein_coding MGP_C57BL6NJ_T0060346.1 MGP_C57BL6NJ_G0027448.1 mouse_genomes_project 2 193630728 193638418 - Uckl1 protein_coding retained_intron MGP_C57BL6NJ_T0001159.1 MGP_C57BL6NJ_G0001065.1 mouse_genomes_project 2 8859541 8862106 + TEC TEC MGP_C57BL6NJ_T0059905.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179560582 179645825 - MGP_C57BL6NJ_P0059905 Atp9a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059906.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179564689 179710685 - MGP_C57BL6NJ_P0059906 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059907.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179564689 179710856 - MGP_C57BL6NJ_P0059907 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059908.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179564689 179708123 - MGP_C57BL6NJ_P0059908 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059909.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179564689 179698664 - MGP_C57BL6NJ_P0059909 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059910.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179564714 179710687 - MGP_C57BL6NJ_P0059910 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059911.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179594458 179602724 - Atp9a protein_coding processed_transcript MGP_C57BL6NJ_T0059912.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179599461 179708123 - Atp9a protein_coding retained_intron MGP_C57BL6NJ_T0059913.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179616871 179711098 - MGP_C57BL6NJ_P0059913 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059914.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179616879 179711132 - MGP_C57BL6NJ_P0059914 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059915.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179658662 179668832 - MGP_C57BL6NJ_P0059915 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0059916.1 MGP_C57BL6NJ_G0027351.1 mouse_genomes_project 2 179658729 179668881 - MGP_C57BL6NJ_P0059916 Atp9a protein_coding protein_coding MGP_C57BL6NJ_T0057825.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133175504 133176683 + Galk2 protein_coding processed_transcript MGP_C57BL6NJ_T0057826.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133175529 133302741 + MGP_C57BL6NJ_P0057826 Galk2 protein_coding protein_coding MGP_C57BL6NJ_T0057827.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133175543 133209305 + MGP_C57BL6NJ_P0057827 Galk2 protein_coding protein_coding MGP_C57BL6NJ_T0057828.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182482 133302029 + MGP_C57BL6NJ_P0057828 Galk2 protein_coding protein_coding MGP_C57BL6NJ_T0057829.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182482 133246814 + MGP_C57BL6NJ_P0057829 Galk2 protein_coding protein_coding MGP_C57BL6NJ_T0057830.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182618 133228688 + Galk2 protein_coding processed_transcript MGP_C57BL6NJ_T0057831.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182625 133212527 + MGP_C57BL6NJ_P0057831 Galk2 protein_coding protein_coding MGP_C57BL6NJ_T0057832.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182629 133246870 + MGP_C57BL6NJ_P0057832 Galk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057833.1 MGP_C57BL6NJ_G0026856.1 mouse_genomes_project 2 133182643 133268351 + Galk2 protein_coding retained_intron MGP_C57BL6NJ_T0013979.1 MGP_C57BL6NJ_G0012024.1 mouse_genomes_project 2 91550888 91551612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056141.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88400301 88410177 + MGP_C57BL6NJ_P0056141 Ssrp1 protein_coding protein_coding MGP_C57BL6NJ_T0056142.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88400518 88410174 + MGP_C57BL6NJ_P0056142 Ssrp1 protein_coding protein_coding MGP_C57BL6NJ_T0056143.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88400520 88402339 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056144.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88400522 88408840 + MGP_C57BL6NJ_P0056144 Ssrp1 protein_coding protein_coding MGP_C57BL6NJ_T0056145.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88400600 88403523 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056146.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88403179 88404090 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056147.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88404241 88405377 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056148.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88408318 88409786 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056149.1 MGP_C57BL6NJ_G0026337.1 mouse_genomes_project 2 88408422 88409353 + Ssrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0059817.1 MGP_C57BL6NJ_G0027330.1 mouse_genomes_project 2 177754259 177780982 - MGP_C57BL6NJ_P0059817 Znfx1 protein_coding protein_coding MGP_C57BL6NJ_T0059818.1 MGP_C57BL6NJ_G0027330.1 mouse_genomes_project 2 177754265 177761962 - MGP_C57BL6NJ_P0059818 Znfx1 protein_coding protein_coding MGP_C57BL6NJ_T0059819.1 MGP_C57BL6NJ_G0027330.1 mouse_genomes_project 2 177762500 177778393 - MGP_C57BL6NJ_P0059819 Znfx1 protein_coding protein_coding MGP_C57BL6NJ_T0059820.1 MGP_C57BL6NJ_G0027330.1 mouse_genomes_project 2 177762585 177780684 - MGP_C57BL6NJ_P0059820 Znfx1 protein_coding protein_coding MGP_C57BL6NJ_T0059821.1 MGP_C57BL6NJ_G0027330.1 mouse_genomes_project 2 177767715 177780607 - Znfx1 protein_coding retained_intron MGP_C57BL6NJ_T0103041.1 MGP_C57BL6NJ_G0040835.1 mouse_genomes_project 2 93716293 93724817 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014029.1 MGP_C57BL6NJ_G0012074.1 mouse_genomes_project 2 110204494 110204681 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055011.1 MGP_C57BL6NJ_G0026120.1 mouse_genomes_project 2 38303557 38392385 + MGP_C57BL6NJ_P0055011 Nek6 protein_coding protein_coding MGP_C57BL6NJ_T0055012.1 MGP_C57BL6NJ_G0026120.1 mouse_genomes_project 2 38303582 38385259 + MGP_C57BL6NJ_P0055012 Nek6 protein_coding protein_coding MGP_C57BL6NJ_T0055013.1 MGP_C57BL6NJ_G0026120.1 mouse_genomes_project 2 38303728 38383545 + MGP_C57BL6NJ_P0055013 Nek6 protein_coding protein_coding MGP_C57BL6NJ_T0055014.1 MGP_C57BL6NJ_G0026120.1 mouse_genomes_project 2 38306495 38352821 + MGP_C57BL6NJ_P0055014 Nek6 protein_coding protein_coding MGP_C57BL6NJ_T0055015.1 MGP_C57BL6NJ_G0026120.1 mouse_genomes_project 2 38306540 38355882 + MGP_C57BL6NJ_P0055015 Nek6 protein_coding protein_coding MGP_C57BL6NJ_T0057659.1 MGP_C57BL6NJ_G0026812.1 mouse_genomes_project 2 128383864 128410784 + MGP_C57BL6NJ_P0057659 Pdia3 protein_coding protein_coding MGP_C57BL6NJ_T0057660.1 MGP_C57BL6NJ_G0026812.1 mouse_genomes_project 2 128384488 128395562 + Pdia3 protein_coding processed_transcript MGP_C57BL6NJ_T0057661.1 MGP_C57BL6NJ_G0026812.1 mouse_genomes_project 2 128384713 128404643 + MGP_C57BL6NJ_P0057661 Pdia3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057662.1 MGP_C57BL6NJ_G0026812.1 mouse_genomes_project 2 128395590 128403079 + Pdia3 protein_coding retained_intron MGP_C57BL6NJ_T0013910.1 MGP_C57BL6NJ_G0011955.1 mouse_genomes_project 2 70837090 70837480 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010605.1 MGP_C57BL6NJ_G0008690.1 mouse_genomes_project 2 15568520 15568633 + Mir6419 miRNA miRNA MGP_C57BL6NJ_T0014030.1 MGP_C57BL6NJ_G0012075.1 mouse_genomes_project 2 110470121 110471304 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059811.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177733957 177753414 + MGP_C57BL6NJ_P0059811 Ddx27 protein_coding protein_coding MGP_C57BL6NJ_T0059812.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177734074 177744490 + MGP_C57BL6NJ_P0059812 Ddx27 protein_coding protein_coding MGP_C57BL6NJ_T0059813.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177734074 177743210 + MGP_C57BL6NJ_P0059813 Ddx27 protein_coding protein_coding MGP_C57BL6NJ_T0059814.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177744877 177746539 + Ddx27 protein_coding retained_intron MGP_C57BL6NJ_T0059815.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177746218 177746967 + Ddx27 protein_coding retained_intron MGP_C57BL6NJ_T0059816.1 MGP_C57BL6NJ_G0027329.1 mouse_genomes_project 2 177752313 177753370 + Ddx27 protein_coding retained_intron MGP_C57BL6NJ_T0101468.1 MGP_C57BL6NJ_G0039514.1 mouse_genomes_project 2 25408729 25408868 - Snhg7 snoRNA snoRNA MGP_C57BL6NJ_T0057258.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125413830 125434747 - MGP_C57BL6NJ_P0057258 Plcb2 protein_coding protein_coding MGP_C57BL6NJ_T0057259.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125414309 125434668 - MGP_C57BL6NJ_P0057259 Plcb2 protein_coding protein_coding MGP_C57BL6NJ_T0057260.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125414493 125417684 - Plcb2 protein_coding retained_intron MGP_C57BL6NJ_T0057261.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125415012 125416055 - Plcb2 protein_coding retained_intron MGP_C57BL6NJ_T0057262.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125417130 125420416 - Plcb2 protein_coding retained_intron MGP_C57BL6NJ_T0057263.1 MGP_C57BL6NJ_G0026741.1 mouse_genomes_project 2 125420544 125434700 - Plcb2 protein_coding retained_intron MGP_C57BL6NJ_T0013740.1 MGP_C57BL6NJ_G0011785.1 mouse_genomes_project 2 6742652 6743082 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054436.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30990470 31001379 + Abl1 protein_coding retained_intron MGP_C57BL6NJ_T0054437.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30990631 31011634 + Abl1 protein_coding processed_transcript MGP_C57BL6NJ_T0054438.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30990645 31124500 + MGP_C57BL6NJ_P0054438 Abl1 protein_coding protein_coding MGP_C57BL6NJ_T0054439.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30990646 31121298 + MGP_C57BL6NJ_P0054439 Abl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054440.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30991559 31096016 + MGP_C57BL6NJ_P0054440 Abl1 protein_coding protein_coding MGP_C57BL6NJ_T0054441.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 30991705 31096648 + MGP_C57BL6NJ_P0054441 Abl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054442.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 31077572 31125186 + MGP_C57BL6NJ_P0054442 Abl1 protein_coding protein_coding MGP_C57BL6NJ_T0054443.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 31077802 31096648 + MGP_C57BL6NJ_P0054443 Abl1 protein_coding protein_coding MGP_C57BL6NJ_T0054444.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 31111137 31115529 + Abl1 protein_coding retained_intron MGP_C57BL6NJ_T0054445.1 MGP_C57BL6NJ_G0026008.1 mouse_genomes_project 2 31117604 31118951 + Abl1 protein_coding retained_intron MGP_C57BL6NJ_T0018305.1 MGP_C57BL6NJ_G0015850.1 mouse_genomes_project 2 121018361 121069599 + Gm13972 processed_transcript processed_transcript MGP_C57BL6NJ_T0055677.1 MGP_C57BL6NJ_G0026238.1 mouse_genomes_project 2 73339665 73370146 + MGP_C57BL6NJ_P0055677 Cybrd1 protein_coding protein_coding MGP_C57BL6NJ_T0057362.1 MGP_C57BL6NJ_G0026769.1 mouse_genomes_project 2 126462903 126470129 - MGP_C57BL6NJ_P0057362 Ndufaf1 protein_coding protein_coding MGP_C57BL6NJ_T0057363.1 MGP_C57BL6NJ_G0026769.1 mouse_genomes_project 2 126467523 126470103 - Ndufaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0057364.1 MGP_C57BL6NJ_G0026769.1 mouse_genomes_project 2 126467703 126470118 - Ndufaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0054559.1 MGP_C57BL6NJ_G0026022.1 mouse_genomes_project 2 31769166 31773932 - MGP_C57BL6NJ_P0054559 1110008P14Rik protein_coding protein_coding MGP_C57BL6NJ_T0054560.1 MGP_C57BL6NJ_G0026022.1 mouse_genomes_project 2 31771170 31774008 - MGP_C57BL6NJ_P0054560 1110008P14Rik protein_coding protein_coding MGP_C57BL6NJ_T0014056.1 MGP_C57BL6NJ_G0012101.1 mouse_genomes_project 2 119697440 119697959 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014164.1 MGP_C57BL6NJ_G0012209.1 mouse_genomes_project 2 165079610 165080072 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057707.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986239 129047969 + MGP_C57BL6NJ_P0057707 Ctdspl2 protein_coding protein_coding MGP_C57BL6NJ_T0057708.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986649 129046715 + MGP_C57BL6NJ_P0057708 Ctdspl2 protein_coding protein_coding MGP_C57BL6NJ_T0057709.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986698 129028174 + Ctdspl2 protein_coding retained_intron MGP_C57BL6NJ_T0057710.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986718 129046942 + Ctdspl2 protein_coding processed_transcript MGP_C57BL6NJ_T0057711.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986724 129027828 + Ctdspl2 protein_coding processed_transcript MGP_C57BL6NJ_T0057712.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986724 129023212 + Ctdspl2 protein_coding retained_intron MGP_C57BL6NJ_T0057713.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 128986897 129045050 + MGP_C57BL6NJ_P0057713 Ctdspl2 protein_coding protein_coding MGP_C57BL6NJ_T0057714.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 129000892 129047918 + MGP_C57BL6NJ_P0057714 Ctdspl2 protein_coding protein_coding MGP_C57BL6NJ_T0057715.1 MGP_C57BL6NJ_G0026823.1 mouse_genomes_project 2 129010674 129037795 + Ctdspl2 protein_coding retained_intron MGP_C57BL6NJ_T0013781.1 MGP_C57BL6NJ_G0011826.1 mouse_genomes_project 2 21246508 21247048 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004218.1 MGP_C57BL6NJ_G0003733.1 mouse_genomes_project 2 125719103 125722760 + Gm14089 antisense antisense MGP_C57BL6NJ_T0007578.1 MGP_C57BL6NJ_G0006214.1 mouse_genomes_project 2 179995595 179996403 - Gm14260 lincRNA lincRNA MGP_C57BL6NJ_T0052986.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9240249 9259600 - MGP_C57BL6NJ_P0052986 Rbm17 protein_coding protein_coding MGP_C57BL6NJ_T0052987.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9240251 9240803 - Rbm17 protein_coding retained_intron MGP_C57BL6NJ_T0052988.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9240253 9241981 - Rbm17 protein_coding retained_intron MGP_C57BL6NJ_T0052989.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9242203 9244348 - Rbm17 protein_coding retained_intron MGP_C57BL6NJ_T0052990.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9244281 9246225 - Rbm17 protein_coding retained_intron MGP_C57BL6NJ_T0052991.1 MGP_C57BL6NJ_G0025759.1 mouse_genomes_project 2 9253004 9260494 - MGP_C57BL6NJ_P0052991 Rbm17 protein_coding protein_coding MGP_C57BL6NJ_T0010642.1 MGP_C57BL6NJ_G0008727.1 mouse_genomes_project 2 38676926 38677015 + Mir181b-2 miRNA miRNA MGP_C57BL6NJ_T0004255.1 MGP_C57BL6NJ_G0003759.1 mouse_genomes_project 2 149557895 149563569 - Macrod2os2 antisense antisense MGP_C57BL6NJ_T0004257.1 MGP_C57BL6NJ_G0003759.1 mouse_genomes_project 2 149560209 149560596 - Macrod2os2 antisense antisense MGP_C57BL6NJ_T0056348.1 MGP_C57BL6NJ_G0026508.1 mouse_genomes_project 2 93556166 93557138 - MGP_C57BL6NJ_P0056348 Olfr1228 protein_coding protein_coding MGP_C57BL6NJ_T0102991.1 MGP_C57BL6NJ_G0040785.1 mouse_genomes_project 2 19393630 19502207 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018198.1 MGP_C57BL6NJ_G0015788.1 mouse_genomes_project 2 12329887 12355731 + Gm13266 processed_transcript retained_intron MGP_C57BL6NJ_T0018199.1 MGP_C57BL6NJ_G0015788.1 mouse_genomes_project 2 12329887 12362755 + Gm13266 processed_transcript lincRNA MGP_C57BL6NJ_T0018200.1 MGP_C57BL6NJ_G0015788.1 mouse_genomes_project 2 12329895 12355551 + Gm13266 processed_transcript lincRNA MGP_C57BL6NJ_T0052749.1 MGP_C57BL6NJ_G0025719.1 mouse_genomes_project 2 280965 284660 - MGP_C57BL6NJ_P0052749 Rpp38 protein_coding protein_coding MGP_C57BL6NJ_T0055424.1 MGP_C57BL6NJ_G0026188.1 mouse_genomes_project 2 63983334 63992565 - MGP_C57BL6NJ_P0055424 Gcg protein_coding protein_coding MGP_C57BL6NJ_T0055425.1 MGP_C57BL6NJ_G0026188.1 mouse_genomes_project 2 63984647 63992560 - MGP_C57BL6NJ_P0055425 Gcg protein_coding protein_coding MGP_C57BL6NJ_T0055426.1 MGP_C57BL6NJ_G0026188.1 mouse_genomes_project 2 63985485 63989593 - Gcg protein_coding processed_transcript MGP_C57BL6NJ_T0057799.1 MGP_C57BL6NJ_G0026846.1 mouse_genomes_project 2 132404083 132415603 + MGP_C57BL6NJ_P0057799 Ctxn2 protein_coding protein_coding MGP_C57BL6NJ_T0058063.1 MGP_C57BL6NJ_G0026913.1 mouse_genomes_project 2 137358124 137386588 + MGP_C57BL6NJ_P0058063 Stk35 protein_coding protein_coding MGP_C57BL6NJ_T0058064.1 MGP_C57BL6NJ_G0026913.1 mouse_genomes_project 2 137358124 137395833 + MGP_C57BL6NJ_P0058064 Stk35 protein_coding protein_coding MGP_C57BL6NJ_T0058595.1 MGP_C57BL6NJ_G0027034.1 mouse_genomes_project 2 157575890 157578776 - MGP_C57BL6NJ_P0058595 Cst11 protein_coding protein_coding MGP_C57BL6NJ_T0058339.1 MGP_C57BL6NJ_G0026974.1 mouse_genomes_project 2 142481444 142538095 - MGP_C57BL6NJ_P0058339 Tmx4 protein_coding protein_coding MGP_C57BL6NJ_T0058340.1 MGP_C57BL6NJ_G0026974.1 mouse_genomes_project 2 142488569 142538082 - Tmx4 protein_coding processed_transcript MGP_C57BL6NJ_T0058341.1 MGP_C57BL6NJ_G0026974.1 mouse_genomes_project 2 142497244 142537991 - MGP_C57BL6NJ_P0058341 Tmx4 protein_coding protein_coding MGP_C57BL6NJ_T0058342.1 MGP_C57BL6NJ_G0026974.1 mouse_genomes_project 2 142533446 142538040 - MGP_C57BL6NJ_P0058342 Tmx4 protein_coding protein_coding MGP_C57BL6NJ_T0053063.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663002 10743603 + MGP_C57BL6NJ_P0053063 Pter protein_coding protein_coding MGP_C57BL6NJ_T0053064.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663023 10721234 + Pter protein_coding processed_transcript MGP_C57BL6NJ_T0053065.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663030 10743604 + MGP_C57BL6NJ_P0053065 Pter protein_coding protein_coding MGP_C57BL6NJ_T0053066.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663053 10746127 + MGP_C57BL6NJ_P0053066 Pter protein_coding protein_coding MGP_C57BL6NJ_T0053067.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663061 10744237 + MGP_C57BL6NJ_P0053067 Pter protein_coding protein_coding MGP_C57BL6NJ_T0053068.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10663062 10722706 + Pter protein_coding processed_transcript MGP_C57BL6NJ_T0053069.1 MGP_C57BL6NJ_G0025767.1 mouse_genomes_project 2 10718643 10744531 + Pter protein_coding retained_intron MGP_C57BL6NJ_T0056523.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757175 95769128 - Nr1h3 protein_coding retained_intron MGP_C57BL6NJ_T0056524.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757175 95769219 - MGP_C57BL6NJ_P0056524 Nr1h3 protein_coding protein_coding MGP_C57BL6NJ_T0056525.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757175 95769138 - MGP_C57BL6NJ_P0056525 Nr1h3 protein_coding protein_coding MGP_C57BL6NJ_T0056526.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757206 95769254 - MGP_C57BL6NJ_P0056526 Nr1h3 protein_coding protein_coding MGP_C57BL6NJ_T0056527.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757206 95768988 - MGP_C57BL6NJ_P0056527 Nr1h3 protein_coding protein_coding MGP_C57BL6NJ_T0056528.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95757320 95766847 - Nr1h3 protein_coding retained_intron MGP_C57BL6NJ_T0056529.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95764667 95765418 - Nr1h3 protein_coding retained_intron MGP_C57BL6NJ_T0056530.1 MGP_C57BL6NJ_G0026565.1 mouse_genomes_project 2 95766133 95778649 - Nr1h3 protein_coding processed_transcript MGP_C57BL6NJ_T0007565.1 MGP_C57BL6NJ_G0006204.1 mouse_genomes_project 2 177824782 177827815 - lincRNA lincRNA MGP_C57BL6NJ_T0007566.1 MGP_C57BL6NJ_G0006204.1 mouse_genomes_project 2 177825673 177827159 - lincRNA lincRNA MGP_C57BL6NJ_T0055255.1 MGP_C57BL6NJ_G0026160.1 mouse_genomes_project 2 58349926 58357870 - MGP_C57BL6NJ_P0055255 Nr4a2 protein_coding protein_coding MGP_C57BL6NJ_T0055256.1 MGP_C57BL6NJ_G0026160.1 mouse_genomes_project 2 58349930 58368669 - MGP_C57BL6NJ_P0055256 Nr4a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055257.1 MGP_C57BL6NJ_G0026160.1 mouse_genomes_project 2 58355103 58358140 - Nr4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0055258.1 MGP_C57BL6NJ_G0026160.1 mouse_genomes_project 2 58356091 58357475 - Nr4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0007557.1 MGP_C57BL6NJ_G0006197.1 mouse_genomes_project 2 176581060 176594255 - Gm11464 lincRNA lincRNA MGP_C57BL6NJ_T0013966.1 MGP_C57BL6NJ_G0012011.1 mouse_genomes_project 2 91023296 91023831 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058907.1 MGP_C57BL6NJ_G0027138.1 mouse_genomes_project 2 163766698 163799425 - MGP_C57BL6NJ_P0058907 Snta1 protein_coding protein_coding MGP_C57BL6NJ_T0058908.1 MGP_C57BL6NJ_G0027138.1 mouse_genomes_project 2 163766698 163799407 - MGP_C57BL6NJ_P0058908 Snta1 protein_coding protein_coding MGP_C57BL6NJ_T0058909.1 MGP_C57BL6NJ_G0027138.1 mouse_genomes_project 2 163790660 163799306 - Snta1 protein_coding processed_transcript MGP_C57BL6NJ_T0052927.1 MGP_C57BL6NJ_G0025748.1 mouse_genomes_project 2 7384693 7410513 - MGP_C57BL6NJ_P0052927 Gata3 protein_coding protein_coding MGP_C57BL6NJ_T0052928.1 MGP_C57BL6NJ_G0025748.1 mouse_genomes_project 2 7394295 7405684 - Gata3 protein_coding processed_transcript MGP_C57BL6NJ_T0052929.1 MGP_C57BL6NJ_G0025748.1 mouse_genomes_project 2 7406498 7407411 - Gata3 protein_coding processed_transcript MGP_C57BL6NJ_T0052930.1 MGP_C57BL6NJ_G0025748.1 mouse_genomes_project 2 7406713 7421945 - MGP_C57BL6NJ_P0052930 Gata3 protein_coding protein_coding MGP_C57BL6NJ_T0059252.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166731657 166749978 - MGP_C57BL6NJ_P0059252 Dsn1 protein_coding protein_coding MGP_C57BL6NJ_T0059253.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166733692 166750057 - MGP_C57BL6NJ_P0059253 Dsn1 protein_coding protein_coding MGP_C57BL6NJ_T0059254.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166736144 166749933 - MGP_C57BL6NJ_P0059254 Dsn1 protein_coding protein_coding MGP_C57BL6NJ_T0059255.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166740105 166746159 - Dsn1 protein_coding retained_intron MGP_C57BL6NJ_T0059256.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166745642 166749204 - MGP_C57BL6NJ_P0059256 Dsn1 protein_coding protein_coding MGP_C57BL6NJ_T0059257.1 MGP_C57BL6NJ_G0027197.1 mouse_genomes_project 2 166748222 166749477 - MGP_C57BL6NJ_P0059257 Dsn1 protein_coding protein_coding MGP_C57BL6NJ_T0056919.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582425 109620951 + MGP_C57BL6NJ_P0056919 Fbxo3 protein_coding protein_coding MGP_C57BL6NJ_T0056920.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582532 109613726 + MGP_C57BL6NJ_P0056920 Fbxo3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056921.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582548 109615234 + MGP_C57BL6NJ_P0056921 Fbxo3 protein_coding protein_coding MGP_C57BL6NJ_T0056922.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582550 109620714 + MGP_C57BL6NJ_P0056922 Fbxo3 protein_coding protein_coding MGP_C57BL6NJ_T0056923.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582552 109615201 + Fbxo3 protein_coding processed_transcript MGP_C57BL6NJ_T0056924.1 MGP_C57BL6NJ_G0026631.1 mouse_genomes_project 2 109582564 109615215 + MGP_C57BL6NJ_P0056924 Fbxo3 protein_coding protein_coding MGP_C57BL6NJ_T0001207.1 MGP_C57BL6NJ_G0001113.1 mouse_genomes_project 2 38676074 38678034 - TEC TEC MGP_C57BL6NJ_T0010623.1 MGP_C57BL6NJ_G0008708.1 mouse_genomes_project 2 28926730 28926795 + Mir219b miRNA miRNA MGP_C57BL6NJ_T0059199.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030084 166159660 + MGP_C57BL6NJ_P0059199 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059200.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030223 166159660 + MGP_C57BL6NJ_P0059200 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059201.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030227 166117292 + Epb41l1 protein_coding processed_transcript MGP_C57BL6NJ_T0059202.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030259 166137734 + MGP_C57BL6NJ_P0059202 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059203.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030276 166159660 + MGP_C57BL6NJ_P0059203 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059204.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166030287 166159660 + MGP_C57BL6NJ_P0059204 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059205.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166088152 166114538 + Epb41l1 protein_coding processed_transcript MGP_C57BL6NJ_T0059206.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166089892 166159660 + MGP_C57BL6NJ_P0059206 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059207.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166108743 166159660 + MGP_C57BL6NJ_P0059207 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059208.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166108766 166159660 + MGP_C57BL6NJ_P0059208 Epb41l1 protein_coding protein_coding MGP_C57BL6NJ_T0059209.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166108781 166159666 + MGP_C57BL6NJ_P0059209 Epb41l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059210.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166121257 166128986 + Epb41l1 protein_coding processed_transcript MGP_C57BL6NJ_T0059211.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166148413 166156462 + Epb41l1 protein_coding retained_intron MGP_C57BL6NJ_T0059212.1 MGP_C57BL6NJ_G0027188.1 mouse_genomes_project 2 166152263 166156802 + Epb41l1 protein_coding processed_transcript MGP_C57BL6NJ_T0014124.1 MGP_C57BL6NJ_G0012169.1 mouse_genomes_project 2 152896869 152897272 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056942.1 MGP_C57BL6NJ_G0026638.1 mouse_genomes_project 2 110032264 110107331 - MGP_C57BL6NJ_P0056942 Hipk3 protein_coding protein_coding MGP_C57BL6NJ_T0056943.1 MGP_C57BL6NJ_G0026638.1 mouse_genomes_project 2 110035564 110106575 - MGP_C57BL6NJ_P0056943 Hipk3 protein_coding protein_coding MGP_C57BL6NJ_T0056944.1 MGP_C57BL6NJ_G0026638.1 mouse_genomes_project 2 110035638 110106839 - MGP_C57BL6NJ_P0056944 Hipk3 protein_coding protein_coding MGP_C57BL6NJ_T0056945.1 MGP_C57BL6NJ_G0026638.1 mouse_genomes_project 2 110039446 110046550 - Hipk3 protein_coding processed_transcript MGP_C57BL6NJ_T0099364.1 MGP_C57BL6NJ_G0037422.1 mouse_genomes_project 2 1123087 1126970 + Gm38085 sense_intronic sense_intronic MGP_C57BL6NJ_T0101478.1 MGP_C57BL6NJ_G0039524.1 mouse_genomes_project 2 32266456 32266584 + Gm24165 snoRNA snoRNA MGP_C57BL6NJ_T0014061.1 MGP_C57BL6NJ_G0012106.1 mouse_genomes_project 2 125174029 125174894 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058107.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138016557 138023559 - Pced1a protein_coding processed_transcript MGP_C57BL6NJ_T0058108.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138016993 138023589 - MGP_C57BL6NJ_P0058108 Pced1a protein_coding protein_coding MGP_C57BL6NJ_T0058109.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138017511 138023592 - Pced1a protein_coding processed_transcript MGP_C57BL6NJ_T0058110.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138017535 138023577 - Pced1a protein_coding retained_intron MGP_C57BL6NJ_T0058111.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138018269 138023998 - MGP_C57BL6NJ_P0058111 Pced1a protein_coding protein_coding MGP_C57BL6NJ_T0058112.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138018280 138024012 - Pced1a protein_coding retained_intron MGP_C57BL6NJ_T0058113.1 MGP_C57BL6NJ_G0026925.1 mouse_genomes_project 2 138021200 138023621 - Pced1a protein_coding retained_intron MGP_C57BL6NJ_T0054943.1 MGP_C57BL6NJ_G0026101.1 mouse_genomes_project 2 36696615 36697542 + MGP_C57BL6NJ_P0054943 Olfr357 protein_coding protein_coding MGP_C57BL6NJ_T0014099.1 MGP_C57BL6NJ_G0012144.1 mouse_genomes_project 2 140422891 140425445 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056307.1 MGP_C57BL6NJ_G0026472.1 mouse_genomes_project 2 92601969 92602905 - MGP_C57BL6NJ_P0056307 protein_coding protein_coding MGP_C57BL6NJ_T0055712.1 MGP_C57BL6NJ_G0026244.1 mouse_genomes_project 2 73822233 73825580 - MGP_C57BL6NJ_P0055712 Dlx2 protein_coding protein_coding MGP_C57BL6NJ_T0055713.1 MGP_C57BL6NJ_G0026244.1 mouse_genomes_project 2 73823691 73824776 - Dlx2 protein_coding retained_intron MGP_C57BL6NJ_T0101473.1 MGP_C57BL6NJ_G0039519.1 mouse_genomes_project 2 25726215 25726286 + Gm24134 snoRNA snoRNA MGP_C57BL6NJ_T0010708.1 MGP_C57BL6NJ_G0008793.1 mouse_genomes_project 2 168709783 168709909 + Gm26141 miRNA miRNA MGP_C57BL6NJ_T0056208.1 MGP_C57BL6NJ_G0026386.1 mouse_genomes_project 2 90020186 90021125 - MGP_C57BL6NJ_P0056208 Olfr1054 protein_coding protein_coding MGP_C57BL6NJ_T0058343.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 142685984 143422985 + MGP_C57BL6NJ_P0058343 Plcb1 protein_coding protein_coding MGP_C57BL6NJ_T0058344.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 142686076 143422996 + MGP_C57BL6NJ_P0058344 Plcb1 protein_coding protein_coding MGP_C57BL6NJ_T0058345.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 142686092 142897647 + Plcb1 protein_coding retained_intron MGP_C57BL6NJ_T0058346.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 142686146 143179920 + Plcb1 protein_coding retained_intron MGP_C57BL6NJ_T0058347.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 142686447 143341105 + MGP_C57BL6NJ_P0058347 Plcb1 protein_coding protein_coding MGP_C57BL6NJ_T0058348.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 143144304 143187516 + Plcb1 protein_coding processed_transcript MGP_C57BL6NJ_T0058349.1 MGP_C57BL6NJ_G0026975.1 mouse_genomes_project 2 143144351 143187521 + MGP_C57BL6NJ_P0058349 Plcb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018251.1 MGP_C57BL6NJ_G0015820.1 mouse_genomes_project 2 74074753 74084630 + Gm13662 processed_transcript processed_transcript MGP_C57BL6NJ_T0007477.1 MGP_C57BL6NJ_G0006129.1 mouse_genomes_project 2 124019622 124022963 - Gm13982 lincRNA lincRNA MGP_C57BL6NJ_T0056246.1 MGP_C57BL6NJ_G0026421.1 mouse_genomes_project 2 91226742 91227738 + MGP_C57BL6NJ_P0056246 Olfr1116 protein_coding protein_coding MGP_C57BL6NJ_T0054931.1 MGP_C57BL6NJ_G0026090.1 mouse_genomes_project 2 36397745 36398684 + MGP_C57BL6NJ_P0054931 Olfr347 protein_coding protein_coding MGP_C57BL6NJ_T0018263.1 MGP_C57BL6NJ_G0015832.1 mouse_genomes_project 2 92986405 92991105 - Gm13760 processed_transcript processed_transcript MGP_C57BL6NJ_T0018264.1 MGP_C57BL6NJ_G0015832.1 mouse_genomes_project 2 92986715 92991577 - Gm13760 processed_transcript processed_transcript MGP_C57BL6NJ_T0058569.1 MGP_C57BL6NJ_G0027023.1 mouse_genomes_project 2 155756476 155760510 - MGP_C57BL6NJ_P0058569 Nkx2-4 protein_coding protein_coding MGP_C57BL6NJ_T0013760.1 MGP_C57BL6NJ_G0011805.1 mouse_genomes_project 2 13862404 13863017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053108.1 MGP_C57BL6NJ_G0025776.1 mouse_genomes_project 2 11996307 12053299 + MGP_C57BL6NJ_P0053108 Tmem236 protein_coding protein_coding MGP_C57BL6NJ_T0010599.1 MGP_C57BL6NJ_G0008684.1 mouse_genomes_project 2 8072980 8073078 + Mir297a-4 miRNA miRNA MGP_C57BL6NJ_T0004096.1 MGP_C57BL6NJ_G0003647.1 mouse_genomes_project 2 30978480 30990564 - Gm13427 antisense antisense MGP_C57BL6NJ_T0100195.1 MGP_C57BL6NJ_G0038241.1 mouse_genomes_project 2 73770672 73770776 + Gm23253 snRNA snRNA MGP_C57BL6NJ_T0055570.1 MGP_C57BL6NJ_G0026217.1 mouse_genomes_project 2 71444950 71474178 + MGP_C57BL6NJ_P0055570 Dhrs9 protein_coding protein_coding MGP_C57BL6NJ_T0056926.1 MGP_C57BL6NJ_G0026633.1 mouse_genomes_project 2 109625748 109626034 - MGP_C57BL6NJ_P0056926 Gm10799 protein_coding protein_coding MGP_C57BL6NJ_T0058404.1 MGP_C57BL6NJ_G0026987.1 mouse_genomes_project 2 148053545 148304262 - MGP_C57BL6NJ_P0058404 Tasp1 protein_coding protein_coding MGP_C57BL6NJ_T0058405.1 MGP_C57BL6NJ_G0026987.1 mouse_genomes_project 2 148053545 148304237 - MGP_C57BL6NJ_P0058405 Tasp1 protein_coding protein_coding MGP_C57BL6NJ_T0058406.1 MGP_C57BL6NJ_G0026987.1 mouse_genomes_project 2 148053545 148304282 - MGP_C57BL6NJ_P0058406 Tasp1 protein_coding protein_coding MGP_C57BL6NJ_T0058407.1 MGP_C57BL6NJ_G0026987.1 mouse_genomes_project 2 148208963 148279303 - Tasp1 protein_coding retained_intron MGP_C57BL6NJ_T0055399.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63197102 63288282 + MGP_C57BL6NJ_P0055399 Psmd14 protein_coding protein_coding MGP_C57BL6NJ_T0055400.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63197150 63206214 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055401.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63197168 63252009 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055402.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63197188 63212168 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055403.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63197199 63248481 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055404.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63201231 63237489 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055405.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63252486 63287959 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0055406.1 MGP_C57BL6NJ_G0026184.1 mouse_genomes_project 2 63263634 63287980 + Psmd14 protein_coding processed_transcript MGP_C57BL6NJ_T0058511.1 MGP_C57BL6NJ_G0027013.1 mouse_genomes_project 2 153387049 153387809 + MGP_C57BL6NJ_P0058511 Scp2d1 protein_coding protein_coding MGP_C57BL6NJ_T0053465.1 MGP_C57BL6NJ_G0025839.1 mouse_genomes_project 2 23790122 23794043 - MGP_C57BL6NJ_P0053465 Tor4a protein_coding protein_coding MGP_C57BL6NJ_T0053466.1 MGP_C57BL6NJ_G0025839.1 mouse_genomes_project 2 23792213 23793916 - MGP_C57BL6NJ_P0053466 Tor4a protein_coding protein_coding MGP_C57BL6NJ_T0053467.1 MGP_C57BL6NJ_G0025839.1 mouse_genomes_project 2 23792948 23793928 - MGP_C57BL6NJ_P0053467 Tor4a protein_coding protein_coding MGP_C57BL6NJ_T0058758.1 MGP_C57BL6NJ_G0027089.1 mouse_genomes_project 2 161649436 161652629 + MGP_C57BL6NJ_P0058758 Defb28 protein_coding protein_coding MGP_C57BL6NJ_T0058114.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138023649 138039640 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0058115.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138023675 138045456 + MGP_C57BL6NJ_P0058115 Vps16 protein_coding protein_coding MGP_C57BL6NJ_T0058116.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138023675 138041104 + MGP_C57BL6NJ_P0058116 Vps16 protein_coding protein_coding MGP_C57BL6NJ_T0058117.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138023714 138041483 + Vps16 protein_coding processed_transcript MGP_C57BL6NJ_T0058118.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138038822 138040254 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0058119.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138040816 138042892 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0058120.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138041508 138042494 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0058121.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138042794 138044586 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0058122.1 MGP_C57BL6NJ_G0026926.1 mouse_genomes_project 2 138044353 138044921 + Vps16 protein_coding retained_intron MGP_C57BL6NJ_T0053274.1 MGP_C57BL6NJ_G0025805.1 mouse_genomes_project 2 19722085 20216173 + MGP_C57BL6NJ_P0053274 Gpr158 protein_coding protein_coding MGP_C57BL6NJ_T0053275.1 MGP_C57BL6NJ_G0025805.1 mouse_genomes_project 2 19722110 20191980 + Gpr158 protein_coding retained_intron MGP_C57BL6NJ_T0013864.1 MGP_C57BL6NJ_G0011909.1 mouse_genomes_project 2 53426876 53427159 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057333.1 MGP_C57BL6NJ_G0026758.1 mouse_genomes_project 2 125969756 125982148 - MGP_C57BL6NJ_P0057333 Ppp1r14d protein_coding protein_coding MGP_C57BL6NJ_T0057334.1 MGP_C57BL6NJ_G0026758.1 mouse_genomes_project 2 125969777 125982107 - MGP_C57BL6NJ_P0057334 Ppp1r14d protein_coding protein_coding MGP_C57BL6NJ_T0059575.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174860573 174865235 + MGP_C57BL6NJ_P0059575 Dbndd2 protein_coding protein_coding MGP_C57BL6NJ_T0059576.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174860922 174865743 + MGP_C57BL6NJ_P0059576 Dbndd2 protein_coding protein_coding MGP_C57BL6NJ_T0059577.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174860922 174865235 + MGP_C57BL6NJ_P0059577 Dbndd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059578.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174860948 174864684 + MGP_C57BL6NJ_P0059578 Dbndd2 protein_coding protein_coding MGP_C57BL6NJ_T0059579.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174861344 174867906 + MGP_C57BL6NJ_P0059579 Dbndd2 protein_coding protein_coding MGP_C57BL6NJ_T0059580.1 MGP_C57BL6NJ_G0027278.1 mouse_genomes_project 2 174862288 174865235 + MGP_C57BL6NJ_P0059580 Dbndd2 protein_coding protein_coding MGP_C57BL6NJ_T0056268.1 MGP_C57BL6NJ_G0026436.1 mouse_genomes_project 2 91634377 91635304 - MGP_C57BL6NJ_P0056268 Olfr1132 protein_coding protein_coding MGP_C57BL6NJ_T0057817.1 MGP_C57BL6NJ_G0026854.1 mouse_genomes_project 2 133042496 133095653 - MGP_C57BL6NJ_P0057817 Secisbp2l protein_coding protein_coding MGP_C57BL6NJ_T0057818.1 MGP_C57BL6NJ_G0026854.1 mouse_genomes_project 2 133050169 133067359 - MGP_C57BL6NJ_P0057818 Secisbp2l protein_coding protein_coding MGP_C57BL6NJ_T0057819.1 MGP_C57BL6NJ_G0026854.1 mouse_genomes_project 2 133055772 133057659 - Secisbp2l protein_coding retained_intron MGP_C57BL6NJ_T0054583.1 MGP_C57BL6NJ_G0026027.1 mouse_genomes_project 2 31948785 31984884 + Fam102a protein_coding retained_intron MGP_C57BL6NJ_T0054584.1 MGP_C57BL6NJ_G0026027.1 mouse_genomes_project 2 31948786 31949644 + MGP_C57BL6NJ_P0054584 Fam102a protein_coding protein_coding MGP_C57BL6NJ_T0054585.1 MGP_C57BL6NJ_G0026027.1 mouse_genomes_project 2 31948812 31984890 + MGP_C57BL6NJ_P0054585 Fam102a protein_coding protein_coding MGP_C57BL6NJ_T0054586.1 MGP_C57BL6NJ_G0026027.1 mouse_genomes_project 2 31949186 31971555 + MGP_C57BL6NJ_P0054586 Fam102a protein_coding protein_coding MGP_C57BL6NJ_T0054587.1 MGP_C57BL6NJ_G0026027.1 mouse_genomes_project 2 31953643 31973593 + Fam102a protein_coding processed_transcript MGP_C57BL6NJ_T0004138.1 MGP_C57BL6NJ_G0003680.1 mouse_genomes_project 2 67615891 67624103 - Gm13619 antisense antisense MGP_C57BL6NJ_T0052851.1 MGP_C57BL6NJ_G0025737.1 mouse_genomes_project 2 2440713 2913003 - MGP_C57BL6NJ_P0052851 Camk1d protein_coding protein_coding MGP_C57BL6NJ_T0052852.1 MGP_C57BL6NJ_G0025737.1 mouse_genomes_project 2 2461360 2874994 - MGP_C57BL6NJ_P0052852 Camk1d protein_coding protein_coding MGP_C57BL6NJ_T0052853.1 MGP_C57BL6NJ_G0025737.1 mouse_genomes_project 2 2628272 2875348 - Camk1d protein_coding processed_transcript MGP_C57BL6NJ_T0052854.1 MGP_C57BL6NJ_G0025737.1 mouse_genomes_project 2 2759386 2912991 - Camk1d protein_coding processed_transcript MGP_C57BL6NJ_T0007381.1 MGP_C57BL6NJ_G0006052.1 mouse_genomes_project 2 61462244 61462968 + Gm13620 lincRNA lincRNA MGP_C57BL6NJ_T0103025.1 MGP_C57BL6NJ_G0040819.1 mouse_genomes_project 2 90906230 90907168 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0054738.1 MGP_C57BL6NJ_G0026053.1 mouse_genomes_project 2 33046120 33127589 - MGP_C57BL6NJ_P0054738 Lmx1b protein_coding protein_coding MGP_C57BL6NJ_T0054739.1 MGP_C57BL6NJ_G0026053.1 mouse_genomes_project 2 33049488 33127558 - MGP_C57BL6NJ_P0054739 Lmx1b protein_coding protein_coding MGP_C57BL6NJ_T0054740.1 MGP_C57BL6NJ_G0026053.1 mouse_genomes_project 2 33052368 33119472 - Lmx1b protein_coding processed_transcript MGP_C57BL6NJ_T0055986.1 MGP_C57BL6NJ_G0026299.1 mouse_genomes_project 2 82634512 82745872 + MGP_C57BL6NJ_P0055986 Ppp1r1c protein_coding protein_coding MGP_C57BL6NJ_T0055987.1 MGP_C57BL6NJ_G0026299.1 mouse_genomes_project 2 82634654 82744095 + MGP_C57BL6NJ_P0055987 Ppp1r1c protein_coding protein_coding MGP_C57BL6NJ_T0055988.1 MGP_C57BL6NJ_G0026299.1 mouse_genomes_project 2 82634655 82751152 + MGP_C57BL6NJ_P0055988 Ppp1r1c protein_coding protein_coding MGP_C57BL6NJ_T0055989.1 MGP_C57BL6NJ_G0026299.1 mouse_genomes_project 2 82634794 82754055 + Ppp1r1c protein_coding processed_transcript MGP_C57BL6NJ_T0055990.1 MGP_C57BL6NJ_G0026299.1 mouse_genomes_project 2 82721259 82744851 + Ppp1r1c protein_coding processed_transcript MGP_C57BL6NJ_T0055191.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52750271 52779212 - MGP_C57BL6NJ_P0055191 Nmi protein_coding protein_coding MGP_C57BL6NJ_T0055192.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52750285 52778992 - MGP_C57BL6NJ_P0055192 Nmi protein_coding protein_coding MGP_C57BL6NJ_T0055193.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52750289 52779004 - MGP_C57BL6NJ_P0055193 Nmi protein_coding protein_coding MGP_C57BL6NJ_T0055194.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52750309 52754362 - MGP_C57BL6NJ_P0055194 Nmi protein_coding protein_coding MGP_C57BL6NJ_T0055195.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52762424 52779482 - MGP_C57BL6NJ_P0055195 Nmi protein_coding protein_coding MGP_C57BL6NJ_T0055196.1 MGP_C57BL6NJ_G0026147.1 mouse_genomes_project 2 52766616 52778958 - Nmi protein_coding retained_intron MGP_C57BL6NJ_T0004204.1 MGP_C57BL6NJ_G0003723.1 mouse_genomes_project 2 119699863 119755245 - Gm13963 antisense antisense MGP_C57BL6NJ_T0007385.1 MGP_C57BL6NJ_G0006056.1 mouse_genomes_project 2 66033978 66045109 - Gm13575 lincRNA lincRNA MGP_C57BL6NJ_T0013929.1 MGP_C57BL6NJ_G0011974.1 mouse_genomes_project 2 77459755 77460390 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058242.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170041 139198871 + MGP_C57BL6NJ_P0058242 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058243.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170309 139203811 + MGP_C57BL6NJ_P0058243 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058244.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170468 139198910 + MGP_C57BL6NJ_P0058244 Smox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058245.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + Smox protein_coding retained_intron MGP_C57BL6NJ_T0058246.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058246 Smox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058247.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058247 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058248.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058248 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058249.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058249 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058250.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058250 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058251.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058251 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058252.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170488 139203800 + MGP_C57BL6NJ_P0058252 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058253.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170509 139204550 + MGP_C57BL6NJ_P0058253 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058254.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170538 139203795 + MGP_C57BL6NJ_P0058254 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058255.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139170809 139190649 + MGP_C57BL6NJ_P0058255 Smox protein_coding protein_coding MGP_C57BL6NJ_T0058256.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139187423 139190686 + Smox protein_coding processed_transcript MGP_C57BL6NJ_T0058257.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139198813 139203507 + MGP_C57BL6NJ_P0058257 Smox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058258.1 MGP_C57BL6NJ_G0026952.1 mouse_genomes_project 2 139200526 139203769 + Smox protein_coding retained_intron MGP_C57BL6NJ_T0001234.1 MGP_C57BL6NJ_G0001139.1 mouse_genomes_project 2 181034956 181036129 - TEC TEC MGP_C57BL6NJ_T0001235.1 MGP_C57BL6NJ_G0001139.1 mouse_genomes_project 2 181035069 181035929 - TEC TEC MGP_C57BL6NJ_T0007411.1 MGP_C57BL6NJ_G0006077.1 mouse_genomes_project 2 77719347 77734932 - Gm13652 lincRNA lincRNA MGP_C57BL6NJ_T0101493.1 MGP_C57BL6NJ_G0039539.1 mouse_genomes_project 2 62939717 62939846 + Gm22338 snoRNA snoRNA MGP_C57BL6NJ_T0013924.1 MGP_C57BL6NJ_G0011969.1 mouse_genomes_project 2 75577785 75579744 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053320.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21502629 21553021 + MGP_C57BL6NJ_P0053320 Yme1l1 protein_coding protein_coding MGP_C57BL6NJ_T0053321.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21502778 21526787 + Yme1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053322.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21502788 21506876 + Yme1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053323.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21503093 21512500 + Yme1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053324.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21516295 21523315 + Yme1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0053325.1 MGP_C57BL6NJ_G0025814.1 mouse_genomes_project 2 21546895 21549132 + Yme1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0007584.1 MGP_C57BL6NJ_G0006219.1 mouse_genomes_project 2 180448797 180454928 - 4930529I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0054314.1 MGP_C57BL6NJ_G0025989.1 mouse_genomes_project 2 29645279 29647959 - MGP_C57BL6NJ_P0054314 Ier5l protein_coding protein_coding MGP_C57BL6NJ_T0098864.1 MGP_C57BL6NJ_G0036928.1 mouse_genomes_project 2 116629369 116629578 - pseudogene pseudogene MGP_C57BL6NJ_T0053269.1 MGP_C57BL6NJ_G0025804.1 mouse_genomes_project 2 19568728 19578038 + MGP_C57BL6NJ_P0053269 Thnsl1 protein_coding protein_coding MGP_C57BL6NJ_T0053270.1 MGP_C57BL6NJ_G0025804.1 mouse_genomes_project 2 19568743 19577405 + MGP_C57BL6NJ_P0053270 Thnsl1 protein_coding protein_coding MGP_C57BL6NJ_T0053271.1 MGP_C57BL6NJ_G0025804.1 mouse_genomes_project 2 19568763 19576308 + MGP_C57BL6NJ_P0053271 Thnsl1 protein_coding protein_coding MGP_C57BL6NJ_T0053272.1 MGP_C57BL6NJ_G0025804.1 mouse_genomes_project 2 19568777 19574571 + MGP_C57BL6NJ_P0053272 Thnsl1 protein_coding protein_coding MGP_C57BL6NJ_T0053273.1 MGP_C57BL6NJ_G0025804.1 mouse_genomes_project 2 19568791 19577337 + MGP_C57BL6NJ_P0053273 Thnsl1 protein_coding protein_coding MGP_C57BL6NJ_T0013885.1 MGP_C57BL6NJ_G0011930.1 mouse_genomes_project 2 60692482 60693278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058005.1 MGP_C57BL6NJ_G0026896.1 mouse_genomes_project 2 136171973 136284074 + MGP_C57BL6NJ_P0058005 Mertk protein_coding protein_coding MGP_C57BL6NJ_T0058006.1 MGP_C57BL6NJ_G0026896.1 mouse_genomes_project 2 136250992 136283857 + Mertk protein_coding processed_transcript MGP_C57BL6NJ_T0101515.1 MGP_C57BL6NJ_G0039561.1 mouse_genomes_project 2 135075152 135075210 + Gm22889 snoRNA snoRNA MGP_C57BL6NJ_T0013767.1 MGP_C57BL6NJ_G0011812.1 mouse_genomes_project 2 16426109 16426520 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059261.1 MGP_C57BL6NJ_G0027199.1 mouse_genomes_project 2 166833907 166843334 + MGP_C57BL6NJ_P0059261 Tldc2 protein_coding protein_coding MGP_C57BL6NJ_T0059262.1 MGP_C57BL6NJ_G0027199.1 mouse_genomes_project 2 166835305 166843335 + MGP_C57BL6NJ_P0059262 Tldc2 protein_coding protein_coding MGP_C57BL6NJ_T0056291.1 MGP_C57BL6NJ_G0026457.1 mouse_genomes_project 2 92006805 92007762 - MGP_C57BL6NJ_P0056291 Olfr74 protein_coding protein_coding MGP_C57BL6NJ_T0010668.1 MGP_C57BL6NJ_G0008753.1 mouse_genomes_project 2 99026444 99026534 - Mir129-2 miRNA miRNA MGP_C57BL6NJ_T0055160.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50280235 50444977 + MGP_C57BL6NJ_P0055160 Kif5c protein_coding protein_coding MGP_C57BL6NJ_T0055161.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50366942 50397544 + MGP_C57BL6NJ_P0055161 Kif5c protein_coding protein_coding MGP_C57BL6NJ_T0055162.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50389859 50402877 + Kif5c protein_coding processed_transcript MGP_C57BL6NJ_T0055163.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50399903 50402868 + Kif5c protein_coding processed_transcript MGP_C57BL6NJ_T0055164.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50411817 50426094 + Kif5c protein_coding processed_transcript MGP_C57BL6NJ_T0055165.1 MGP_C57BL6NJ_G0026140.1 mouse_genomes_project 2 50419482 50427615 + Kif5c protein_coding processed_transcript MGP_C57BL6NJ_T0001177.1 MGP_C57BL6NJ_G0001083.1 mouse_genomes_project 2 11969969 11973447 + TEC TEC MGP_C57BL6NJ_T0055607.1 MGP_C57BL6NJ_G0026225.1 mouse_genomes_project 2 71931667 71934047 + Klhl23 protein_coding processed_transcript MGP_C57BL6NJ_T0055608.1 MGP_C57BL6NJ_G0026225.1 mouse_genomes_project 2 71932093 71946375 + MGP_C57BL6NJ_P0055608 Klhl23 protein_coding protein_coding MGP_C57BL6NJ_T0055609.1 MGP_C57BL6NJ_G0026225.1 mouse_genomes_project 2 71934077 71935968 + Klhl23 protein_coding processed_transcript MGP_C57BL6NJ_T0053647.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24203422 24211608 - MGP_C57BL6NJ_P0053647 Mamdc4 protein_coding protein_coding MGP_C57BL6NJ_T0053648.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24203444 24211650 - MGP_C57BL6NJ_P0053648 Mamdc4 protein_coding protein_coding MGP_C57BL6NJ_T0053649.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24203617 24210546 - MGP_C57BL6NJ_P0053649 Mamdc4 protein_coding protein_coding MGP_C57BL6NJ_T0053650.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24208749 24209777 - Mamdc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053651.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24208793 24209407 - Mamdc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053652.1 MGP_C57BL6NJ_G0025872.1 mouse_genomes_project 2 24210465 24215125 - Mamdc4 protein_coding processed_transcript MGP_C57BL6NJ_T0007563.1 MGP_C57BL6NJ_G0006202.1 mouse_genomes_project 2 177096826 177108448 + 5031425F14Rik lincRNA lincRNA MGP_C57BL6NJ_T0101503.1 MGP_C57BL6NJ_G0039549.1 mouse_genomes_project 2 99603523 99603655 - Gm26396 snoRNA snoRNA MGP_C57BL6NJ_T0013776.1 MGP_C57BL6NJ_G0011821.1 mouse_genomes_project 2 18289211 18290010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014000.1 MGP_C57BL6NJ_G0012045.1 mouse_genomes_project 2 100539770 100539909 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058898.1 MGP_C57BL6NJ_G0027136.1 mouse_genomes_project 2 163609558 163615785 + protein_coding retained_intron MGP_C57BL6NJ_T0058899.1 MGP_C57BL6NJ_G0027136.1 mouse_genomes_project 2 163615336 163638048 + protein_coding processed_transcript MGP_C57BL6NJ_T0013790.1 MGP_C57BL6NJ_G0011835.1 mouse_genomes_project 2 23567468 23568511 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001229.1 MGP_C57BL6NJ_G0001134.1 mouse_genomes_project 2 144689145 144689411 + TEC TEC MGP_C57BL6NJ_T0057442.1 MGP_C57BL6NJ_G0026784.1 mouse_genomes_project 2 127176772 127189197 - Pla2g4f protein_coding retained_intron MGP_C57BL6NJ_T0057443.1 MGP_C57BL6NJ_G0026784.1 mouse_genomes_project 2 127176781 127190975 - MGP_C57BL6NJ_P0057443 Pla2g4f protein_coding protein_coding MGP_C57BL6NJ_T0057461.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282430 127303727 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057462.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282735 127297982 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057463.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282736 127339798 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057464.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282744 127304483 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057465.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282758 127344518 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057466.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282848 127297980 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057467.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127282872 127294148 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057468.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127283302 127345368 + MGP_C57BL6NJ_P0057468 Ganc protein_coding protein_coding MGP_C57BL6NJ_T0057469.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127283308 127292854 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057470.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127283514 127344534 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057471.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127284648 127343891 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057472.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127289909 127316796 + Ganc protein_coding retained_intron MGP_C57BL6NJ_T0057473.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127303568 127311067 + Ganc protein_coding processed_transcript MGP_C57BL6NJ_T0057474.1 MGP_C57BL6NJ_G0026787.1 mouse_genomes_project 2 127335096 127344013 + Ganc protein_coding retained_intron MGP_C57BL6NJ_T0056491.1 MGP_C57BL6NJ_G0026563.1 mouse_genomes_project 2 95689010 95707369 + MGP_C57BL6NJ_P0056491 Mybpc3 protein_coding protein_coding MGP_C57BL6NJ_T0056492.1 MGP_C57BL6NJ_G0026563.1 mouse_genomes_project 2 95689010 95707363 + MGP_C57BL6NJ_P0056492 Mybpc3 protein_coding protein_coding MGP_C57BL6NJ_T0056493.1 MGP_C57BL6NJ_G0026563.1 mouse_genomes_project 2 95689010 95707363 + MGP_C57BL6NJ_P0056493 Mybpc3 protein_coding protein_coding MGP_C57BL6NJ_T0056494.1 MGP_C57BL6NJ_G0026563.1 mouse_genomes_project 2 95689035 95707370 + MGP_C57BL6NJ_P0056494 Mybpc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056240.1 MGP_C57BL6NJ_G0026415.1 mouse_genomes_project 2 91015109 91016048 - MGP_C57BL6NJ_P0056240 Olfr259 protein_coding protein_coding MGP_C57BL6NJ_T0054832.1 MGP_C57BL6NJ_G0026066.1 mouse_genomes_project 2 34678556 34694694 - MGP_C57BL6NJ_P0054832 AI182371 protein_coding protein_coding MGP_C57BL6NJ_T0054833.1 MGP_C57BL6NJ_G0026066.1 mouse_genomes_project 2 34681852 34694693 - MGP_C57BL6NJ_P0054833 AI182371 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054834.1 MGP_C57BL6NJ_G0026066.1 mouse_genomes_project 2 34682193 34689864 - AI182371 protein_coding processed_transcript MGP_C57BL6NJ_T0054835.1 MGP_C57BL6NJ_G0026066.1 mouse_genomes_project 2 34684896 34695552 - AI182371 protein_coding processed_transcript MGP_C57BL6NJ_T0103033.1 MGP_C57BL6NJ_G0040827.1 mouse_genomes_project 2 92034162 92035054 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010580.1 MGP_C57BL6NJ_G0008665.1 mouse_genomes_project 2 8062764 8062862 + Mir297c miRNA miRNA MGP_C57BL6NJ_T0014003.1 MGP_C57BL6NJ_G0012048.1 mouse_genomes_project 2 101021195 101021355 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058744.1 MGP_C57BL6NJ_G0027080.1 mouse_genomes_project 2 161450456 161457704 - MGP_C57BL6NJ_P0058744 Trib3 protein_coding protein_coding MGP_C57BL6NJ_T0058745.1 MGP_C57BL6NJ_G0027080.1 mouse_genomes_project 2 161452782 161457660 - Trib3 protein_coding processed_transcript MGP_C57BL6NJ_T0058746.1 MGP_C57BL6NJ_G0027080.1 mouse_genomes_project 2 161456631 161457642 - Trib3 protein_coding retained_intron MGP_C57BL6NJ_T0007514.1 MGP_C57BL6NJ_G0006161.1 mouse_genomes_project 2 152700002 152716799 - lincRNA lincRNA MGP_C57BL6NJ_T0007515.1 MGP_C57BL6NJ_G0006161.1 mouse_genomes_project 2 152701167 152706553 - lincRNA lincRNA MGP_C57BL6NJ_T0101512.1 MGP_C57BL6NJ_G0039558.1 mouse_genomes_project 2 118758844 118758973 + Gm22676 snoRNA snoRNA MGP_C57BL6NJ_T0013778.1 MGP_C57BL6NJ_G0011823.1 mouse_genomes_project 2 19803195 19803816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054093.1 MGP_C57BL6NJ_G0025958.1 mouse_genomes_project 2 28824940 28829068 + Gm13547 protein_coding processed_transcript MGP_C57BL6NJ_T0054095.1 MGP_C57BL6NJ_G0025958.1 mouse_genomes_project 2 28827156 28831548 + MGP_C57BL6NJ_P0054095 Gm13547 protein_coding protein_coding MGP_C57BL6NJ_T0054096.1 MGP_C57BL6NJ_G0025958.1 mouse_genomes_project 2 28827189 28831426 + MGP_C57BL6NJ_P0054096 Gm13547 protein_coding protein_coding MGP_C57BL6NJ_T0057293.1 MGP_C57BL6NJ_G0026749.1 mouse_genomes_project 2 125741352 125754355 - MGP_C57BL6NJ_P0057293 Ccdc32 protein_coding protein_coding MGP_C57BL6NJ_T0057294.1 MGP_C57BL6NJ_G0026749.1 mouse_genomes_project 2 125746695 125754355 - MGP_C57BL6NJ_P0057294 Ccdc32 protein_coding protein_coding MGP_C57BL6NJ_T0057295.1 MGP_C57BL6NJ_G0026749.1 mouse_genomes_project 2 125746766 125754339 - MGP_C57BL6NJ_P0057295 Ccdc32 protein_coding protein_coding MGP_C57BL6NJ_T0004189.1 MGP_C57BL6NJ_G0003716.1 mouse_genomes_project 2 108191362 108200215 - Gm13872 antisense antisense MGP_C57BL6NJ_T0004190.1 MGP_C57BL6NJ_G0003716.1 mouse_genomes_project 2 108197106 108200202 - Gm13872 antisense antisense MGP_C57BL6NJ_T0004191.1 MGP_C57BL6NJ_G0003716.1 mouse_genomes_project 2 108198093 108200216 - Gm13872 antisense antisense MGP_C57BL6NJ_T0018318.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129858698 129874759 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018319.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129859557 129877237 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018320.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129859559 129874759 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018321.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129860886 129877238 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018322.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129860888 129874870 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018323.1 MGP_C57BL6NJ_G0015857.1 mouse_genomes_project 2 129864695 129878097 + 4930417H01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0004179.1 MGP_C57BL6NJ_G0003709.1 mouse_genomes_project 2 88519062 88557005 + Gm13713 antisense antisense MGP_C57BL6NJ_T0004180.1 MGP_C57BL6NJ_G0003709.1 mouse_genomes_project 2 88519062 88536410 + Gm13713 antisense antisense MGP_C57BL6NJ_T0058714.1 MGP_C57BL6NJ_G0027070.1 mouse_genomes_project 2 160916066 160949380 + MGP_C57BL6NJ_P0058714 Rspo4 protein_coding protein_coding MGP_C57BL6NJ_T0058630.1 MGP_C57BL6NJ_G0027052.1 mouse_genomes_project 2 159564355 159590075 - MGP_C57BL6NJ_P0058630 Apmap protein_coding protein_coding MGP_C57BL6NJ_T0058631.1 MGP_C57BL6NJ_G0027052.1 mouse_genomes_project 2 159568396 159581746 - Apmap protein_coding processed_transcript MGP_C57BL6NJ_T0058632.1 MGP_C57BL6NJ_G0027052.1 mouse_genomes_project 2 159575781 159590052 - Apmap protein_coding processed_transcript MGP_C57BL6NJ_T0053858.1 MGP_C57BL6NJ_G0025912.1 mouse_genomes_project 2 25442241 25445850 - MGP_C57BL6NJ_P0053858 Lcn4 protein_coding protein_coding MGP_C57BL6NJ_T0014125.1 MGP_C57BL6NJ_G0012170.1 mouse_genomes_project 2 153316357 153318611 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004223.1 MGP_C57BL6NJ_G0003738.1 mouse_genomes_project 2 132484567 132494340 - Gm14002 antisense antisense MGP_C57BL6NJ_T0053164.1 MGP_C57BL6NJ_G0025788.1 mouse_genomes_project 2 16086021 16089918 - Skida1 protein_coding processed_transcript MGP_C57BL6NJ_T0053165.1 MGP_C57BL6NJ_G0025788.1 mouse_genomes_project 2 16089428 16094363 - MGP_C57BL6NJ_P0053165 Skida1 protein_coding protein_coding MGP_C57BL6NJ_T0053166.1 MGP_C57BL6NJ_G0025788.1 mouse_genomes_project 2 16090598 16093795 - MGP_C57BL6NJ_P0053166 Skida1 protein_coding protein_coding MGP_C57BL6NJ_T0053167.1 MGP_C57BL6NJ_G0025788.1 mouse_genomes_project 2 16093061 16094096 - MGP_C57BL6NJ_P0053167 Skida1 protein_coding protein_coding MGP_C57BL6NJ_T0053168.1 MGP_C57BL6NJ_G0025788.1 mouse_genomes_project 2 16093489 16094343 - MGP_C57BL6NJ_P0053168 Skida1 protein_coding protein_coding MGP_C57BL6NJ_T0055661.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73160967 73260860 - MGP_C57BL6NJ_P0055661 Mettl8 protein_coding protein_coding MGP_C57BL6NJ_T0055662.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73160974 73260884 - MGP_C57BL6NJ_P0055662 Mettl8 protein_coding protein_coding MGP_C57BL6NJ_T0055663.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73160974 73260884 - MGP_C57BL6NJ_P0055663 Mettl8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055664.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73160974 73260884 - MGP_C57BL6NJ_P0055664 Mettl8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055665.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73162578 73169802 - MGP_C57BL6NJ_P0055665 Mettl8 protein_coding protein_coding MGP_C57BL6NJ_T0055666.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73162896 73181157 - MGP_C57BL6NJ_P0055666 Mettl8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055667.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73163463 73173857 - Mettl8 protein_coding retained_intron MGP_C57BL6NJ_T0055668.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73176121 73260873 - MGP_C57BL6NJ_P0055668 Mettl8 protein_coding protein_coding MGP_C57BL6NJ_T0055669.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73180031 73260884 - Mettl8 protein_coding retained_intron MGP_C57BL6NJ_T0055670.1 MGP_C57BL6NJ_G0026236.1 mouse_genomes_project 2 73193492 73219481 - Mettl8 protein_coding retained_intron MGP_C57BL6NJ_T0014011.1 MGP_C57BL6NJ_G0012056.1 mouse_genomes_project 2 105609406 105609662 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060143.1 MGP_C57BL6NJ_G0027415.1 mouse_genomes_project 2 192372563 192393094 + MGP_C57BL6NJ_P0060143 Slco4a1 protein_coding protein_coding MGP_C57BL6NJ_T0060144.1 MGP_C57BL6NJ_G0027415.1 mouse_genomes_project 2 192372652 192393072 + Slco4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0060145.1 MGP_C57BL6NJ_G0027415.1 mouse_genomes_project 2 192377297 192393094 + MGP_C57BL6NJ_P0060145 Slco4a1 protein_coding protein_coding MGP_C57BL6NJ_T0060146.1 MGP_C57BL6NJ_G0027415.1 mouse_genomes_project 2 192383388 192384676 + Slco4a1 protein_coding retained_intron MGP_C57BL6NJ_T0060147.1 MGP_C57BL6NJ_G0027415.1 mouse_genomes_project 2 192388747 192393079 + Slco4a1 protein_coding retained_intron MGP_C57BL6NJ_T0055441.1 MGP_C57BL6NJ_G0026191.1 mouse_genomes_project 2 64199336 64230376 + MGP_C57BL6NJ_P0055441 Gca protein_coding protein_coding MGP_C57BL6NJ_T0055442.1 MGP_C57BL6NJ_G0026191.1 mouse_genomes_project 2 64221655 64225755 + Gca protein_coding processed_transcript MGP_C57BL6NJ_T0014086.1 MGP_C57BL6NJ_G0012131.1 mouse_genomes_project 2 136902792 136902893 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099086.1 MGP_C57BL6NJ_G0037150.1 mouse_genomes_project 2 177323192 177323308 - Gm23152 rRNA rRNA MGP_C57BL6NJ_T0055131.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49529006 49578428 - MGP_C57BL6NJ_P0055131 Orc4 protein_coding protein_coding MGP_C57BL6NJ_T0055132.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49531062 49537204 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055133.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49531498 49578383 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055134.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49531561 49537859 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055135.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49531596 49539766 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055136.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49538594 49578386 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055137.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49544395 49579191 - MGP_C57BL6NJ_P0055137 Orc4 protein_coding protein_coding MGP_C57BL6NJ_T0055138.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49557829 49569454 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055139.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49560161 49578386 - MGP_C57BL6NJ_P0055139 Orc4 protein_coding protein_coding MGP_C57BL6NJ_T0055140.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49565571 49578384 - Orc4 protein_coding processed_transcript MGP_C57BL6NJ_T0055141.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49565867 49578393 - MGP_C57BL6NJ_P0055141 Orc4 protein_coding protein_coding MGP_C57BL6NJ_T0055142.1 MGP_C57BL6NJ_G0026137.1 mouse_genomes_project 2 49565938 49579429 - MGP_C57BL6NJ_P0055142 Orc4 protein_coding protein_coding MGP_C57BL6NJ_T0001156.1 MGP_C57BL6NJ_G0001062.1 mouse_genomes_project 2 8612556 8612667 - TEC TEC MGP_C57BL6NJ_T0058386.1 MGP_C57BL6NJ_G0026981.1 mouse_genomes_project 2 144879830 144900229 - MGP_C57BL6NJ_P0058386 Mkks protein_coding protein_coding MGP_C57BL6NJ_T0058387.1 MGP_C57BL6NJ_G0026981.1 mouse_genomes_project 2 144879830 144900236 - MGP_C57BL6NJ_P0058387 Mkks protein_coding protein_coding MGP_C57BL6NJ_T0058388.1 MGP_C57BL6NJ_G0026981.1 mouse_genomes_project 2 144887269 144900001 - MGP_C57BL6NJ_P0058388 Mkks protein_coding protein_coding MGP_C57BL6NJ_T0055980.1 MGP_C57BL6NJ_G0026297.1 mouse_genomes_project 2 82373608 82377839 - MGP_C57BL6NJ_P0055980 Neurod1 protein_coding protein_coding MGP_C57BL6NJ_T0013962.1 MGP_C57BL6NJ_G0012007.1 mouse_genomes_project 2 88635443 88635664 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059878.1 MGP_C57BL6NJ_G0027345.1 mouse_genomes_project 2 179087822 179115639 - MGP_C57BL6NJ_P0059878 Adnp protein_coding protein_coding MGP_C57BL6NJ_T0059879.1 MGP_C57BL6NJ_G0027345.1 mouse_genomes_project 2 179087822 179115829 - MGP_C57BL6NJ_P0059879 Adnp protein_coding protein_coding MGP_C57BL6NJ_T0059881.1 MGP_C57BL6NJ_G0027345.1 mouse_genomes_project 2 179091804 179115426 - Adnp protein_coding processed_transcript MGP_C57BL6NJ_T0059882.1 MGP_C57BL6NJ_G0027345.1 mouse_genomes_project 2 179113073 179115426 - Adnp protein_coding retained_intron MGP_C57BL6NJ_T0053749.1 MGP_C57BL6NJ_G0025897.1 mouse_genomes_project 2 24976446 25027449 - MGP_C57BL6NJ_P0053749 Ccdc187 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053751.1 MGP_C57BL6NJ_G0025897.1 mouse_genomes_project 2 25004417 25027623 - MGP_C57BL6NJ_P0053751 Ccdc187 protein_coding protein_coding MGP_C57BL6NJ_T0053752.1 MGP_C57BL6NJ_G0025897.1 mouse_genomes_project 2 25013664 25021227 - MGP_C57BL6NJ_P0053752 Ccdc187 protein_coding protein_coding MGP_C57BL6NJ_T0052872.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3081621 3106962 - MGP_C57BL6NJ_P0052872 Sec61a2 protein_coding protein_coding MGP_C57BL6NJ_T0052873.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3081663 3106864 - MGP_C57BL6NJ_P0052873 Sec61a2 protein_coding protein_coding MGP_C57BL6NJ_T0052874.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3082229 3087095 - MGP_C57BL6NJ_P0052874 Sec61a2 protein_coding protein_coding MGP_C57BL6NJ_T0052875.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3082627 3085431 - Sec61a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052876.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3084045 3084925 - Sec61a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052877.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3084432 3087659 - Sec61a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052878.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3087040 3088625 - Sec61a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052879.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3087108 3089006 - Sec61a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052880.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3088489 3106849 - MGP_C57BL6NJ_P0052880 Sec61a2 protein_coding protein_coding MGP_C57BL6NJ_T0052881.1 MGP_C57BL6NJ_G0025741.1 mouse_genomes_project 2 3092442 3106864 - Sec61a2 protein_coding retained_intron MGP_C57BL6NJ_T0007590.1 MGP_C57BL6NJ_G0006224.1 mouse_genomes_project 2 181820753 181830778 - Gm14264 lincRNA lincRNA MGP_C57BL6NJ_T0055795.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76314116 76404907 - MGP_C57BL6NJ_P0055795 Atf2 protein_coding protein_coding MGP_C57BL6NJ_T0055796.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76314127 76404896 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055797.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76316429 76369958 - MGP_C57BL6NJ_P0055797 Atf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055798.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76316529 76376360 - MGP_C57BL6NJ_P0055798 Atf2 protein_coding protein_coding MGP_C57BL6NJ_T0055799.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76325694 76404881 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055800.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76331684 76404798 - MGP_C57BL6NJ_P0055800 Atf2 protein_coding protein_coding MGP_C57BL6NJ_T0055801.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76347932 76404896 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055802.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76348502 76404861 - MGP_C57BL6NJ_P0055802 Atf2 protein_coding protein_coding MGP_C57BL6NJ_T0055803.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76348503 76404821 - MGP_C57BL6NJ_P0055803 Atf2 protein_coding protein_coding MGP_C57BL6NJ_T0055804.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76348797 76353668 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055805.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76369595 76404862 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055806.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76369688 76404896 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0055807.1 MGP_C57BL6NJ_G0026260.1 mouse_genomes_project 2 76383744 76404818 - Atf2 protein_coding processed_transcript MGP_C57BL6NJ_T0007442.1 MGP_C57BL6NJ_G0006102.1 mouse_genomes_project 2 100706413 100708920 + Gm13799 lincRNA lincRNA MGP_C57BL6NJ_T0060003.1 MGP_C57BL6NJ_G0027379.1 mouse_genomes_project 2 184649843 184705370 - MGP_C57BL6NJ_P0060003 Pmepa1 protein_coding protein_coding MGP_C57BL6NJ_T0060004.1 MGP_C57BL6NJ_G0027379.1 mouse_genomes_project 2 184653431 184705026 - MGP_C57BL6NJ_P0060004 Pmepa1 protein_coding protein_coding MGP_C57BL6NJ_T0060005.1 MGP_C57BL6NJ_G0027379.1 mouse_genomes_project 2 184653596 184660097 - Pmepa1 protein_coding retained_intron MGP_C57BL6NJ_T0059858.1 MGP_C57BL6NJ_G0027338.1 mouse_genomes_project 2 178331127 178337248 + MGP_C57BL6NJ_P0059858 Snai1 protein_coding protein_coding MGP_C57BL6NJ_T0059034.1 MGP_C57BL6NJ_G0027164.1 mouse_genomes_project 2 165246330 165275036 - MGP_C57BL6NJ_P0059034 Edem2 protein_coding protein_coding MGP_C57BL6NJ_T0059035.1 MGP_C57BL6NJ_G0027164.1 mouse_genomes_project 2 165250371 165257961 - Edem2 protein_coding processed_transcript MGP_C57BL6NJ_T0059036.1 MGP_C57BL6NJ_G0027164.1 mouse_genomes_project 2 165253188 165255629 - Edem2 protein_coding retained_intron MGP_C57BL6NJ_T0059037.1 MGP_C57BL6NJ_G0027164.1 mouse_genomes_project 2 165253626 165261002 - Edem2 protein_coding retained_intron MGP_C57BL6NJ_T0014208.1 MGP_C57BL6NJ_G0012253.1 mouse_genomes_project 2 188805810 188806362 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004098.1 MGP_C57BL6NJ_G0003649.1 mouse_genomes_project 2 31306208 31307066 - Gm13442 antisense antisense MGP_C57BL6NJ_T0053421.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548317 23639465 + MGP_C57BL6NJ_P0053421 Pnpla7 protein_coding protein_coding MGP_C57BL6NJ_T0053422.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548357 23639465 + MGP_C57BL6NJ_P0053422 Pnpla7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053423.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548372 23555331 + MGP_C57BL6NJ_P0053423 Pnpla7 protein_coding protein_coding MGP_C57BL6NJ_T0053424.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548373 23569874 + MGP_C57BL6NJ_P0053424 Pnpla7 protein_coding protein_coding MGP_C57BL6NJ_T0053425.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548385 23553399 + Pnpla7 protein_coding processed_transcript MGP_C57BL6NJ_T0053426.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23548432 23623252 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053427.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23555411 23562807 + Pnpla7 protein_coding processed_transcript MGP_C57BL6NJ_T0053428.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23570228 23573244 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053429.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23570720 23591893 + MGP_C57BL6NJ_P0053429 Pnpla7 protein_coding protein_coding MGP_C57BL6NJ_T0053430.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23623414 23639465 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053431.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23636759 23637498 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053432.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23637073 23639176 + MGP_C57BL6NJ_P0053432 Pnpla7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053433.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23637128 23637744 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053434.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23637315 23638259 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0053435.1 MGP_C57BL6NJ_G0025834.1 mouse_genomes_project 2 23638561 23639263 + Pnpla7 protein_coding retained_intron MGP_C57BL6NJ_T0014052.1 MGP_C57BL6NJ_G0012097.1 mouse_genomes_project 2 117938761 117939507 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053785.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115836 25122267 - MGP_C57BL6NJ_P0053785 Sdccag3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053786.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115846 25122361 - MGP_C57BL6NJ_P0053786 Sdccag3 protein_coding protein_coding MGP_C57BL6NJ_T0053787.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115846 25122342 - MGP_C57BL6NJ_P0053787 Sdccag3 protein_coding protein_coding MGP_C57BL6NJ_T0053788.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115846 25122336 - MGP_C57BL6NJ_P0053788 Sdccag3 protein_coding protein_coding MGP_C57BL6NJ_T0053789.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115846 25122349 - MGP_C57BL6NJ_P0053789 Sdccag3 protein_coding protein_coding MGP_C57BL6NJ_T0053790.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25115847 25120626 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053791.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25116599 25118258 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053792.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25116608 25118654 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053793.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25119699 25122328 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053794.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25119699 25122351 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053795.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25120057 25122340 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053796.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25120149 25121739 - MGP_C57BL6NJ_P0053796 Sdccag3 protein_coding protein_coding MGP_C57BL6NJ_T0053797.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25120170 25122312 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0053798.1 MGP_C57BL6NJ_G0025903.1 mouse_genomes_project 2 25120600 25122210 - Sdccag3 protein_coding processed_transcript MGP_C57BL6NJ_T0057843.1 MGP_C57BL6NJ_G0026860.1 mouse_genomes_project 2 133658812 133849723 - MGP_C57BL6NJ_P0057843 Atp8b4 protein_coding protein_coding MGP_C57BL6NJ_T0057844.1 MGP_C57BL6NJ_G0026860.1 mouse_genomes_project 2 133660375 133841449 - MGP_C57BL6NJ_P0057844 Atp8b4 protein_coding protein_coding MGP_C57BL6NJ_T0057845.1 MGP_C57BL6NJ_G0026860.1 mouse_genomes_project 2 133711129 133841429 - Atp8b4 protein_coding retained_intron MGP_C57BL6NJ_T0057846.1 MGP_C57BL6NJ_G0026860.1 mouse_genomes_project 2 133711175 133849865 - MGP_C57BL6NJ_P0057846 Atp8b4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057847.1 MGP_C57BL6NJ_G0026860.1 mouse_genomes_project 2 133735198 133850550 - MGP_C57BL6NJ_P0057847 Atp8b4 protein_coding protein_coding MGP_C57BL6NJ_T0013765.1 MGP_C57BL6NJ_G0011810.1 mouse_genomes_project 2 16254800 16255214 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060075.1 MGP_C57BL6NJ_G0027398.1 mouse_genomes_project 2 190199991 190207890 - MGP_C57BL6NJ_P0060075 Ppp1r3d protein_coding protein_coding MGP_C57BL6NJ_T0059518.1 MGP_C57BL6NJ_G0027253.1 mouse_genomes_project 2 174120071 174128158 + Wisp2 protein_coding processed_transcript MGP_C57BL6NJ_T0059519.1 MGP_C57BL6NJ_G0027253.1 mouse_genomes_project 2 174120099 174132286 + MGP_C57BL6NJ_P0059519 Wisp2 protein_coding protein_coding MGP_C57BL6NJ_T0011756.1 MGP_C57BL6NJ_G0009841.1 mouse_genomes_project 2 40585470 40585640 - Gm27348 misc_RNA misc_RNA MGP_C57BL6NJ_T0057761.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897736 129908709 + MGP_C57BL6NJ_P0057761 Bloc1s6 protein_coding protein_coding MGP_C57BL6NJ_T0057762.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897746 129905214 + Bloc1s6 protein_coding processed_transcript MGP_C57BL6NJ_T0057763.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897752 129907333 + Bloc1s6 protein_coding processed_transcript MGP_C57BL6NJ_T0057764.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897760 129898393 + Bloc1s6 protein_coding processed_transcript MGP_C57BL6NJ_T0057765.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897763 129905280 + Bloc1s6 protein_coding processed_transcript MGP_C57BL6NJ_T0057766.1 MGP_C57BL6NJ_G0026841.1 mouse_genomes_project 2 129897792 129906240 + Bloc1s6 protein_coding processed_transcript MGP_C57BL6NJ_T0057155.1 MGP_C57BL6NJ_G0026716.1 mouse_genomes_project 2 119578342 119591155 + MGP_C57BL6NJ_P0057155 Tmco5b protein_coding protein_coding MGP_C57BL6NJ_T0099220.1 MGP_C57BL6NJ_G0037284.1 mouse_genomes_project 2 112904666 112904936 - Gm24885 ribozyme ribozyme MGP_C57BL6NJ_T0007351.1 MGP_C57BL6NJ_G0006028.1 mouse_genomes_project 2 33625708 33639756 - Gm38389 lincRNA lincRNA MGP_C57BL6NJ_T0018211.1 MGP_C57BL6NJ_G0015795.1 mouse_genomes_project 2 25183243 25196897 + 0610009E02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018212.1 MGP_C57BL6NJ_G0015795.1 mouse_genomes_project 2 25183471 25195513 + 0610009E02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018213.1 MGP_C57BL6NJ_G0015795.1 mouse_genomes_project 2 25183489 25196908 + 0610009E02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0055129.1 MGP_C57BL6NJ_G0026136.1 mouse_genomes_project 2 49435648 49529452 + MGP_C57BL6NJ_P0055129 Acvr2a protein_coding protein_coding MGP_C57BL6NJ_T0055130.1 MGP_C57BL6NJ_G0026136.1 mouse_genomes_project 2 49516572 49526431 + Acvr2a protein_coding processed_transcript MGP_C57BL6NJ_T0053283.1 MGP_C57BL6NJ_G0025808.1 mouse_genomes_project 2 20930348 21005596 + MGP_C57BL6NJ_P0053283 Gad2 protein_coding protein_coding MGP_C57BL6NJ_T0053284.1 MGP_C57BL6NJ_G0025808.1 mouse_genomes_project 2 20931447 20938145 + Gad2 protein_coding processed_transcript MGP_C57BL6NJ_T0004075.1 MGP_C57BL6NJ_G0003632.1 mouse_genomes_project 2 24930480 24933062 + Gm27196 antisense antisense MGP_C57BL6NJ_T0060071.1 MGP_C57BL6NJ_G0027397.1 mouse_genomes_project 2 190130922 190196477 - MGP_C57BL6NJ_P0060071 Sycp2 protein_coding protein_coding MGP_C57BL6NJ_T0060072.1 MGP_C57BL6NJ_G0027397.1 mouse_genomes_project 2 190131748 190161322 - Sycp2 protein_coding processed_transcript MGP_C57BL6NJ_T0060073.1 MGP_C57BL6NJ_G0027397.1 mouse_genomes_project 2 190155781 190161662 - Sycp2 protein_coding retained_intron MGP_C57BL6NJ_T0060074.1 MGP_C57BL6NJ_G0027397.1 mouse_genomes_project 2 190182182 190196214 - MGP_C57BL6NJ_P0060074 Sycp2 protein_coding protein_coding MGP_C57BL6NJ_T0007405.1 MGP_C57BL6NJ_G0006073.1 mouse_genomes_project 2 77243836 77247306 + lincRNA lincRNA MGP_C57BL6NJ_T0007406.1 MGP_C57BL6NJ_G0006073.1 mouse_genomes_project 2 77243917 77247306 + lincRNA lincRNA MGP_C57BL6NJ_T0058574.1 MGP_C57BL6NJ_G0027025.1 mouse_genomes_project 2 156073162 156079114 + MGP_C57BL6NJ_P0058574 Pax1 protein_coding protein_coding MGP_C57BL6NJ_T0058575.1 MGP_C57BL6NJ_G0027025.1 mouse_genomes_project 2 156076229 156085605 + MGP_C57BL6NJ_P0058575 Pax1 protein_coding protein_coding MGP_C57BL6NJ_T0058576.1 MGP_C57BL6NJ_G0027025.1 mouse_genomes_project 2 156079517 156104854 + Pax1 protein_coding retained_intron MGP_C57BL6NJ_T0101537.1 MGP_C57BL6NJ_G0039583.1 mouse_genomes_project 2 168298342 168298473 - Gm24411 snoRNA snoRNA MGP_C57BL6NJ_T0014198.1 MGP_C57BL6NJ_G0012243.1 mouse_genomes_project 2 179340446 179341291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058570.1 MGP_C57BL6NJ_G0027024.1 mouse_genomes_project 2 155871140 155881082 - MGP_C57BL6NJ_P0058570 Nkx2-2 protein_coding protein_coding MGP_C57BL6NJ_T0058571.1 MGP_C57BL6NJ_G0027024.1 mouse_genomes_project 2 155878320 155881385 - MGP_C57BL6NJ_P0058571 Nkx2-2 protein_coding protein_coding MGP_C57BL6NJ_T0058572.1 MGP_C57BL6NJ_G0027024.1 mouse_genomes_project 2 155881285 155891864 - Nkx2-2 protein_coding processed_transcript MGP_C57BL6NJ_T0058573.1 MGP_C57BL6NJ_G0027024.1 mouse_genomes_project 2 155881362 155891863 - Nkx2-2 protein_coding processed_transcript MGP_C57BL6NJ_T0013826.1 MGP_C57BL6NJ_G0011871.1 mouse_genomes_project 2 38769251 38769849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004228.1 MGP_C57BL6NJ_G0003743.1 mouse_genomes_project 2 136681348 136704328 - AI847159 antisense antisense MGP_C57BL6NJ_T0004229.1 MGP_C57BL6NJ_G0003743.1 mouse_genomes_project 2 136701843 136704328 - AI847159 antisense antisense MGP_C57BL6NJ_T0004230.1 MGP_C57BL6NJ_G0003743.1 mouse_genomes_project 2 136701847 136702237 - AI847159 antisense antisense MGP_C57BL6NJ_T0004231.1 MGP_C57BL6NJ_G0003743.1 mouse_genomes_project 2 136701891 136704363 - AI847159 antisense antisense MGP_C57BL6NJ_T0101498.1 MGP_C57BL6NJ_G0039544.1 mouse_genomes_project 2 83704407 83704534 + Gm25420 snoRNA snoRNA MGP_C57BL6NJ_T0010574.1 MGP_C57BL6NJ_G0008659.1 mouse_genomes_project 2 8058659 8058742 + Mir467a-10 miRNA miRNA MGP_C57BL6NJ_T0057264.1 MGP_C57BL6NJ_G0026742.1 mouse_genomes_project 2 125461113 125469616 - MGP_C57BL6NJ_P0057264 A430105I19Rik protein_coding protein_coding MGP_C57BL6NJ_T0057265.1 MGP_C57BL6NJ_G0026742.1 mouse_genomes_project 2 125464453 125469580 - A430105I19Rik protein_coding retained_intron MGP_C57BL6NJ_T0007493.1 MGP_C57BL6NJ_G0006143.1 mouse_genomes_project 2 135685055 135687006 - Gm14012 lincRNA lincRNA MGP_C57BL6NJ_T0053984.1 MGP_C57BL6NJ_G0025937.1 mouse_genomes_project 2 27401360 27407756 + Ppp1r26 protein_coding processed_transcript MGP_C57BL6NJ_T0053985.1 MGP_C57BL6NJ_G0025937.1 mouse_genomes_project 2 27401426 27408080 + Ppp1r26 protein_coding processed_transcript MGP_C57BL6NJ_T0053986.1 MGP_C57BL6NJ_G0025937.1 mouse_genomes_project 2 27402514 27407916 + Ppp1r26 protein_coding processed_transcript MGP_C57BL6NJ_T0053987.1 MGP_C57BL6NJ_G0025937.1 mouse_genomes_project 2 27402514 27412758 + MGP_C57BL6NJ_P0053987 Ppp1r26 protein_coding protein_coding MGP_C57BL6NJ_T0053988.1 MGP_C57BL6NJ_G0025937.1 mouse_genomes_project 2 27402514 27412755 + MGP_C57BL6NJ_P0053988 Ppp1r26 protein_coding protein_coding MGP_C57BL6NJ_T0055038.1 MGP_C57BL6NJ_G0026127.1 mouse_genomes_project 2 38861395 38871293 + Arpc5l protein_coding processed_transcript MGP_C57BL6NJ_T0055039.1 MGP_C57BL6NJ_G0026127.1 mouse_genomes_project 2 38864123 38871844 + MGP_C57BL6NJ_P0055039 Arpc5l protein_coding protein_coding MGP_C57BL6NJ_T0055040.1 MGP_C57BL6NJ_G0026127.1 mouse_genomes_project 2 38864188 38869866 + Arpc5l protein_coding processed_transcript MGP_C57BL6NJ_T0055041.1 MGP_C57BL6NJ_G0026127.1 mouse_genomes_project 2 38864204 38871360 + MGP_C57BL6NJ_P0055041 Arpc5l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055042.1 MGP_C57BL6NJ_G0026127.1 mouse_genomes_project 2 38866065 38871844 + Arpc5l protein_coding processed_transcript MGP_C57BL6NJ_T0014050.1 MGP_C57BL6NJ_G0012095.1 mouse_genomes_project 2 117894145 117895079 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013759.1 MGP_C57BL6NJ_G0011804.1 mouse_genomes_project 2 13347842 13348272 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010654.1 MGP_C57BL6NJ_G0008739.1 mouse_genomes_project 2 78281471 78281545 + Gm24574 miRNA miRNA MGP_C57BL6NJ_T0058851.1 MGP_C57BL6NJ_G0027118.1 mouse_genomes_project 2 162635808 162769843 - MGP_C57BL6NJ_P0058851 Nol4l protein_coding protein_coding MGP_C57BL6NJ_T0058852.1 MGP_C57BL6NJ_G0027118.1 mouse_genomes_project 2 162646177 162674659 - Nol4l protein_coding processed_transcript MGP_C57BL6NJ_T0058853.1 MGP_C57BL6NJ_G0027118.1 mouse_genomes_project 2 162684523 162720166 - Nol4l protein_coding processed_transcript MGP_C57BL6NJ_T0058854.1 MGP_C57BL6NJ_G0027118.1 mouse_genomes_project 2 162690334 162728857 - Nol4l protein_coding processed_transcript MGP_C57BL6NJ_T0058855.1 MGP_C57BL6NJ_G0027118.1 mouse_genomes_project 2 162694133 162712134 - Nol4l protein_coding processed_transcript MGP_C57BL6NJ_T0014111.1 MGP_C57BL6NJ_G0012156.1 mouse_genomes_project 2 148358685 148359066 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059727.1 MGP_C57BL6NJ_G0027315.1 mouse_genomes_project 2 175875755 175890228 - MGP_C57BL6NJ_P0059727 Zfp334 protein_coding protein_coding MGP_C57BL6NJ_T0056601.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96279012 96300419 - MGP_C57BL6NJ_P0056601 Atg13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056602.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96279015 96314444 - MGP_C57BL6NJ_P0056602 Atg13 protein_coding protein_coding MGP_C57BL6NJ_T0056603.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96279016 96314387 - MGP_C57BL6NJ_P0056603 Atg13 protein_coding protein_coding MGP_C57BL6NJ_T0056604.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96280680 96284053 - Atg13 protein_coding processed_transcript MGP_C57BL6NJ_T0056605.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96280715 96286591 - Atg13 protein_coding processed_transcript MGP_C57BL6NJ_T0056606.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96283773 96289614 - Atg13 protein_coding processed_transcript MGP_C57BL6NJ_T0056607.1 MGP_C57BL6NJ_G0026576.1 mouse_genomes_project 2 96293119 96309597 - Atg13 protein_coding processed_transcript MGP_C57BL6NJ_T0007368.1 MGP_C57BL6NJ_G0006041.1 mouse_genomes_project 2 50479812 50486773 - Gm13480 lincRNA lincRNA MGP_C57BL6NJ_T0060006.1 MGP_C57BL6NJ_G0027380.1 mouse_genomes_project 2 184977259 184983001 + MGP_C57BL6NJ_P0060006 1700021F07Rik protein_coding protein_coding MGP_C57BL6NJ_T0001183.1 MGP_C57BL6NJ_G0001089.1 mouse_genomes_project 2 12783741 12785678 + TEC TEC MGP_C57BL6NJ_T0057344.1 MGP_C57BL6NJ_G0026762.1 mouse_genomes_project 2 126095205 126106415 + MGP_C57BL6NJ_P0057344 Dll4 protein_coding protein_coding MGP_C57BL6NJ_T0057345.1 MGP_C57BL6NJ_G0026762.1 mouse_genomes_project 2 126097959 126101575 + Dll4 protein_coding processed_transcript MGP_C57BL6NJ_T0010607.1 MGP_C57BL6NJ_G0008692.1 mouse_genomes_project 2 18128266 18128342 + Gm44457 miRNA miRNA MGP_C57BL6NJ_T0014193.1 MGP_C57BL6NJ_G0012238.1 mouse_genomes_project 2 177819547 177819745 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053383.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23347999 23459450 - MGP_C57BL6NJ_P0053383 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053384.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23348347 23488472 - MGP_C57BL6NJ_P0053384 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053385.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23348347 23364647 - MGP_C57BL6NJ_P0053385 Ehmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053386.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23348347 23488472 - MGP_C57BL6NJ_P0053386 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053387.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23349154 23488514 - MGP_C57BL6NJ_P0053387 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053388.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23363524 23384850 - Ehmt1 protein_coding retained_intron MGP_C57BL6NJ_T0053389.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23364561 23401977 - MGP_C57BL6NJ_P0053389 Ehmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053390.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23364619 23365574 - Ehmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0053391.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23382786 23488488 - MGP_C57BL6NJ_P0053391 Ehmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053392.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23384430 23415107 - MGP_C57BL6NJ_P0053392 Ehmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053393.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23397487 23488477 - Ehmt1 protein_coding retained_intron MGP_C57BL6NJ_T0053394.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23410412 23440180 - MGP_C57BL6NJ_P0053394 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053395.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23425552 23448453 - MGP_C57BL6NJ_P0053395 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053396.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23425621 23488505 - MGP_C57BL6NJ_P0053396 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053397.1 MGP_C57BL6NJ_G0025829.1 mouse_genomes_project 2 23426218 23488496 - MGP_C57BL6NJ_P0053397 Ehmt1 protein_coding protein_coding MGP_C57BL6NJ_T0054057.1 MGP_C57BL6NJ_G0025953.1 mouse_genomes_project 2 28055283 28084665 + MGP_C57BL6NJ_P0054057 Ttf1 protein_coding protein_coding MGP_C57BL6NJ_T0054058.1 MGP_C57BL6NJ_G0025953.1 mouse_genomes_project 2 28055287 28084625 + Ttf1 protein_coding retained_intron MGP_C57BL6NJ_T0054059.1 MGP_C57BL6NJ_G0025953.1 mouse_genomes_project 2 28070080 28078625 + Ttf1 protein_coding retained_intron MGP_C57BL6NJ_T0054060.1 MGP_C57BL6NJ_G0025953.1 mouse_genomes_project 2 28080437 28081721 + Ttf1 protein_coding retained_intron MGP_C57BL6NJ_T0054965.1 MGP_C57BL6NJ_G0026112.1 mouse_genomes_project 2 37158055 37163475 - MGP_C57BL6NJ_P0054965 Zbtb6 protein_coding protein_coding MGP_C57BL6NJ_T0054966.1 MGP_C57BL6NJ_G0026112.1 mouse_genomes_project 2 37158058 37176181 - MGP_C57BL6NJ_P0054966 Zbtb6 protein_coding protein_coding MGP_C57BL6NJ_T0007559.1 MGP_C57BL6NJ_G0006199.1 mouse_genomes_project 2 176830655 176832053 - Gm11467 lincRNA lincRNA MGP_C57BL6NJ_T0054869.1 MGP_C57BL6NJ_G0026071.1 mouse_genomes_project 2 34965909 34980148 - MGP_C57BL6NJ_P0054869 4930568D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0052782.1 MGP_C57BL6NJ_G0025726.1 mouse_genomes_project 2 483268 497658 + Cdnf protein_coding processed_transcript MGP_C57BL6NJ_T0052783.1 MGP_C57BL6NJ_G0025726.1 mouse_genomes_project 2 483303 500212 + MGP_C57BL6NJ_P0052783 Cdnf protein_coding protein_coding MGP_C57BL6NJ_T0052784.1 MGP_C57BL6NJ_G0025726.1 mouse_genomes_project 2 484122 497736 + Cdnf protein_coding processed_transcript MGP_C57BL6NJ_T0059952.1 MGP_C57BL6NJ_G0027361.1 mouse_genomes_project 2 181901746 182064592 + MGP_C57BL6NJ_P0059952 Dok5 protein_coding protein_coding MGP_C57BL6NJ_T0053659.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24224480 24255136 - MGP_C57BL6NJ_P0053659 Rabl6 protein_coding protein_coding MGP_C57BL6NJ_T0053660.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24225573 24235045 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053661.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24225573 24255080 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053662.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24225597 24226523 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053663.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24226651 24227286 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053664.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24227136 24231980 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053665.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24232117 24233832 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053666.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24232199 24255100 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0053667.1 MGP_C57BL6NJ_G0025875.1 mouse_genomes_project 2 24243180 24255071 - Rabl6 protein_coding processed_transcript MGP_C57BL6NJ_T0103054.1 MGP_C57BL6NJ_G0040848.1 mouse_genomes_project 2 129509750 129510026 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007498.1 MGP_C57BL6NJ_G0006146.1 mouse_genomes_project 2 137513441 137514081 + Gm28196 lincRNA lincRNA MGP_C57BL6NJ_T0014094.1 MGP_C57BL6NJ_G0012139.1 mouse_genomes_project 2 139129682 139130195 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007507.1 MGP_C57BL6NJ_G0006154.1 mouse_genomes_project 2 143631694 143638400 - Gm14211 lincRNA lincRNA MGP_C57BL6NJ_T0014016.1 MGP_C57BL6NJ_G0012061.1 mouse_genomes_project 2 107580720 107581165 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058512.1 MGP_C57BL6NJ_G0027014.1 mouse_genomes_project 2 153747200 154245757 + MGP_C57BL6NJ_P0058512 Slc24a3 protein_coding protein_coding MGP_C57BL6NJ_T0058513.1 MGP_C57BL6NJ_G0027014.1 mouse_genomes_project 2 153747365 154118451 + Slc24a3 protein_coding processed_transcript MGP_C57BL6NJ_T0058514.1 MGP_C57BL6NJ_G0027014.1 mouse_genomes_project 2 153816261 154245757 + Slc24a3 protein_coding processed_transcript MGP_C57BL6NJ_T0058515.1 MGP_C57BL6NJ_G0027014.1 mouse_genomes_project 2 153818622 154243952 + MGP_C57BL6NJ_P0058515 Slc24a3 protein_coding protein_coding MGP_C57BL6NJ_T0058516.1 MGP_C57BL6NJ_G0027014.1 mouse_genomes_project 2 154212747 154220086 + Slc24a3 protein_coding processed_transcript MGP_C57BL6NJ_T0060250.1 MGP_C57BL6NJ_G0027436.1 mouse_genomes_project 2 193215938 193218777 + MGP_C57BL6NJ_P0060250 BC051628 protein_coding protein_coding MGP_C57BL6NJ_T0060251.1 MGP_C57BL6NJ_G0027436.1 mouse_genomes_project 2 193215962 193218372 + MGP_C57BL6NJ_P0060251 BC051628 protein_coding protein_coding MGP_C57BL6NJ_T0053913.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830298 25837222 + MGP_C57BL6NJ_P0053913 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053914.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830298 25837797 + MGP_C57BL6NJ_P0053914 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053915.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830298 25841695 + MGP_C57BL6NJ_P0053915 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053916.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830298 25841695 + MGP_C57BL6NJ_P0053916 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053917.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830385 25838794 + Cacfd1 protein_coding processed_transcript MGP_C57BL6NJ_T0053918.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830454 25836276 + MGP_C57BL6NJ_P0053918 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053919.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25830965 25840904 + MGP_C57BL6NJ_P0053919 Cacfd1 protein_coding protein_coding MGP_C57BL6NJ_T0053920.1 MGP_C57BL6NJ_G0025923.1 mouse_genomes_project 2 25835955 25837808 + Cacfd1 protein_coding retained_intron MGP_C57BL6NJ_T0054447.1 MGP_C57BL6NJ_G0026010.1 mouse_genomes_project 2 31134156 31179547 - MGP_C57BL6NJ_P0054447 Fibcd1 protein_coding protein_coding MGP_C57BL6NJ_T0054899.1 MGP_C57BL6NJ_G0026076.1 mouse_genomes_project 2 35701121 35714202 - MGP_C57BL6NJ_P0054899 Ndufa8 protein_coding protein_coding MGP_C57BL6NJ_T0059024.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165171142 165236157 - MGP_C57BL6NJ_P0059024 Trpc4ap protein_coding protein_coding MGP_C57BL6NJ_T0059025.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165171179 165236105 - MGP_C57BL6NJ_P0059025 Trpc4ap protein_coding protein_coding MGP_C57BL6NJ_T0059026.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165171616 165174608 - Trpc4ap protein_coding processed_transcript MGP_C57BL6NJ_T0059027.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165172467 165174654 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059028.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165175847 165216662 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059029.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165175854 165177406 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059030.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165180457 165205526 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059031.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165191525 165236155 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059032.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165207585 165212103 - Trpc4ap protein_coding retained_intron MGP_C57BL6NJ_T0059033.1 MGP_C57BL6NJ_G0027163.1 mouse_genomes_project 2 165216667 165235896 - Trpc4ap protein_coding processed_transcript MGP_C57BL6NJ_T0014017.1 MGP_C57BL6NJ_G0012062.1 mouse_genomes_project 2 107617205 107618173 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014199.1 MGP_C57BL6NJ_G0012244.1 mouse_genomes_project 2 181603458 181603764 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103006.1 MGP_C57BL6NJ_G0040800.1 mouse_genomes_project 2 87617329 87618302 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011763.1 MGP_C57BL6NJ_G0009848.1 mouse_genomes_project 2 70450106 70450348 + Gm26321 misc_RNA misc_RNA MGP_C57BL6NJ_T0057725.1 MGP_C57BL6NJ_G0026829.1 mouse_genomes_project 2 129236992 129258737 + MGP_C57BL6NJ_P0057725 Terb2 protein_coding protein_coding MGP_C57BL6NJ_T0057726.1 MGP_C57BL6NJ_G0026829.1 mouse_genomes_project 2 129237194 129257301 + Terb2 protein_coding processed_transcript MGP_C57BL6NJ_T0057093.1 MGP_C57BL6NJ_G0026677.1 mouse_genomes_project 2 117399774 117400716 + MGP_C57BL6NJ_P0057093 Olfr1278 protein_coding protein_coding MGP_C57BL6NJ_T0103007.1 MGP_C57BL6NJ_G0040801.1 mouse_genomes_project 2 88514385 88516927 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004097.1 MGP_C57BL6NJ_G0003648.1 mouse_genomes_project 2 31225324 31230808 - Gm13441 antisense antisense MGP_C57BL6NJ_T0056030.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86868735 86888828 + MGP_C57BL6NJ_P0056030 Zc3h15 protein_coding protein_coding MGP_C57BL6NJ_T0056031.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86868781 86882601 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0056032.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86868837 86877851 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0056033.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86868923 86884478 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0056034.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86880918 86882365 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0056035.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86881411 86885829 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0056036.1 MGP_C57BL6NJ_G0026310.1 mouse_genomes_project 2 86884304 86888828 + Zc3h15 protein_coding processed_transcript MGP_C57BL6NJ_T0007519.1 MGP_C57BL6NJ_G0006165.1 mouse_genomes_project 2 156446922 156454898 + A530006G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007527.1 MGP_C57BL6NJ_G0006170.1 mouse_genomes_project 2 159708698 159709336 - Gm28450 lincRNA lincRNA MGP_C57BL6NJ_T0059832.1 MGP_C57BL6NJ_G0027334.1 mouse_genomes_project 2 178056839 178112303 - MGP_C57BL6NJ_P0059832 B4galt5 protein_coding protein_coding MGP_C57BL6NJ_T0059833.1 MGP_C57BL6NJ_G0027334.1 mouse_genomes_project 2 178059596 178064064 - MGP_C57BL6NJ_P0059833 B4galt5 protein_coding protein_coding MGP_C57BL6NJ_T0059834.1 MGP_C57BL6NJ_G0027334.1 mouse_genomes_project 2 178065975 178072221 - B4galt5 protein_coding processed_transcript MGP_C57BL6NJ_T0059835.1 MGP_C57BL6NJ_G0027334.1 mouse_genomes_project 2 178065975 178072266 - B4galt5 protein_coding processed_transcript MGP_C57BL6NJ_T0056715.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98155452 98201972 - MGP_C57BL6NJ_P0056715 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056716.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98155452 98202063 - MGP_C57BL6NJ_P0056716 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056717.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98155457 98202507 - MGP_C57BL6NJ_P0056717 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056718.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98155495 98156629 - Cd82 protein_coding processed_transcript MGP_C57BL6NJ_T0056719.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98156171 98192240 - MGP_C57BL6NJ_P0056719 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056720.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98156998 98201947 - MGP_C57BL6NJ_P0056720 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056721.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98158168 98192244 - MGP_C57BL6NJ_P0056721 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056722.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98158168 98201473 - MGP_C57BL6NJ_P0056722 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056723.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98167857 98202701 - MGP_C57BL6NJ_P0056723 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0056724.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98171208 98202004 - Cd82 protein_coding processed_transcript MGP_C57BL6NJ_T0056725.1 MGP_C57BL6NJ_G0026596.1 mouse_genomes_project 2 98175106 98202473 - MGP_C57BL6NJ_P0056725 Cd82 protein_coding protein_coding MGP_C57BL6NJ_T0014110.1 MGP_C57BL6NJ_G0012155.1 mouse_genomes_project 2 148311718 148313324 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007567.1 MGP_C57BL6NJ_G0006205.1 mouse_genomes_project 2 178522209 178559699 + A530013C23Rik lincRNA lincRNA MGP_C57BL6NJ_T0007568.1 MGP_C57BL6NJ_G0006205.1 mouse_genomes_project 2 178522213 178528828 + A530013C23Rik lincRNA lincRNA MGP_C57BL6NJ_T0056320.1 MGP_C57BL6NJ_G0026483.1 mouse_genomes_project 2 92956701 92957646 - MGP_C57BL6NJ_P0056320 Olfr1197 protein_coding protein_coding MGP_C57BL6NJ_T0059396.1 MGP_C57BL6NJ_G0027226.1 mouse_genomes_project 2 170369940 170372162 - MGP_C57BL6NJ_P0059396 Gm826 protein_coding protein_coding MGP_C57BL6NJ_T0059397.1 MGP_C57BL6NJ_G0027226.1 mouse_genomes_project 2 170370291 170394686 - Gm826 protein_coding processed_transcript MGP_C57BL6NJ_T0059398.1 MGP_C57BL6NJ_G0027226.1 mouse_genomes_project 2 170370408 170387982 - MGP_C57BL6NJ_P0059398 Gm826 protein_coding protein_coding MGP_C57BL6NJ_T0100232.1 MGP_C57BL6NJ_G0038278.1 mouse_genomes_project 2 177451189 177451292 + Gm24477 snRNA snRNA MGP_C57BL6NJ_T0101542.1 MGP_C57BL6NJ_G0039588.1 mouse_genomes_project 2 169126132 169126264 + Gm25090 snoRNA snoRNA MGP_C57BL6NJ_T0001231.1 MGP_C57BL6NJ_G0001136.1 mouse_genomes_project 2 165672037 165673719 - TEC TEC MGP_C57BL6NJ_T0055956.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81703653 81707410 + MGP_C57BL6NJ_P0055956 Ube2e3 protein_coding protein_coding MGP_C57BL6NJ_T0055957.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81703731 81752669 + MGP_C57BL6NJ_P0055957 Ube2e3 protein_coding protein_coding MGP_C57BL6NJ_T0055958.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81704427 81760248 + MGP_C57BL6NJ_P0055958 Ube2e3 protein_coding protein_coding MGP_C57BL6NJ_T0055959.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81704620 81753481 + Ube2e3 protein_coding retained_intron MGP_C57BL6NJ_T0055960.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81704714 81709562 + Ube2e3 protein_coding retained_intron MGP_C57BL6NJ_T0055961.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81705058 81759225 + MGP_C57BL6NJ_P0055961 Ube2e3 protein_coding protein_coding MGP_C57BL6NJ_T0055962.1 MGP_C57BL6NJ_G0026294.1 mouse_genomes_project 2 81757323 81758980 + Ube2e3 protein_coding retained_intron MGP_C57BL6NJ_T0099377.1 MGP_C57BL6NJ_G0037435.1 mouse_genomes_project 2 170682252 170684129 + Gm14222 sense_intronic sense_intronic MGP_C57BL6NJ_T0057347.1 MGP_C57BL6NJ_G0026764.1 mouse_genomes_project 2 126146897 126257594 - MGP_C57BL6NJ_P0057347 Ino80 protein_coding protein_coding MGP_C57BL6NJ_T0057348.1 MGP_C57BL6NJ_G0026764.1 mouse_genomes_project 2 126178114 126257520 - MGP_C57BL6NJ_P0057348 Ino80 protein_coding protein_coding MGP_C57BL6NJ_T0057349.1 MGP_C57BL6NJ_G0026764.1 mouse_genomes_project 2 126209023 126215432 - Ino80 protein_coding retained_intron MGP_C57BL6NJ_T0056229.1 MGP_C57BL6NJ_G0026405.1 mouse_genomes_project 2 90817095 90819150 - MGP_C57BL6NJ_P0056229 protein_coding protein_coding MGP_C57BL6NJ_T0056230.1 MGP_C57BL6NJ_G0026405.1 mouse_genomes_project 2 90817095 90818182 - MGP_C57BL6NJ_P0056230 protein_coding protein_coding MGP_C57BL6NJ_T0055745.1 MGP_C57BL6NJ_G0026249.1 mouse_genomes_project 2 74845243 74860640 + MGP_C57BL6NJ_P0055745 Cdca7 protein_coding protein_coding MGP_C57BL6NJ_T0055746.1 MGP_C57BL6NJ_G0026249.1 mouse_genomes_project 2 74845337 74851582 + MGP_C57BL6NJ_P0055746 Cdca7 protein_coding protein_coding MGP_C57BL6NJ_T0055747.1 MGP_C57BL6NJ_G0026249.1 mouse_genomes_project 2 74845474 74850945 + Cdca7 protein_coding processed_transcript MGP_C57BL6NJ_T0055748.1 MGP_C57BL6NJ_G0026249.1 mouse_genomes_project 2 74852648 74853828 + Cdca7 protein_coding processed_transcript MGP_C57BL6NJ_T0055749.1 MGP_C57BL6NJ_G0026249.1 mouse_genomes_project 2 74854191 74859949 + Cdca7 protein_coding processed_transcript MGP_C57BL6NJ_T0010558.1 MGP_C57BL6NJ_G0008643.1 mouse_genomes_project 2 8033108 8033216 + Gm22677 miRNA miRNA MGP_C57BL6NJ_T0059296.1 MGP_C57BL6NJ_G0027205.1 mouse_genomes_project 2 167191649 167226538 + MGP_C57BL6NJ_P0059296 Manbal protein_coding protein_coding MGP_C57BL6NJ_T0057955.1 MGP_C57BL6NJ_G0026884.1 mouse_genomes_project 2 134971930 134984292 - MGP_C57BL6NJ_P0057955 Zfp661 protein_coding protein_coding MGP_C57BL6NJ_T0057956.1 MGP_C57BL6NJ_G0026884.1 mouse_genomes_project 2 134972801 134981933 - MGP_C57BL6NJ_P0057956 Zfp661 protein_coding protein_coding MGP_C57BL6NJ_T0057957.1 MGP_C57BL6NJ_G0026884.1 mouse_genomes_project 2 134972808 134981941 - MGP_C57BL6NJ_P0057957 Zfp661 protein_coding protein_coding MGP_C57BL6NJ_T0057958.1 MGP_C57BL6NJ_G0026884.1 mouse_genomes_project 2 134974203 134978772 - MGP_C57BL6NJ_P0057958 Zfp661 protein_coding protein_coding MGP_C57BL6NJ_T0058817.1 MGP_C57BL6NJ_G0027109.1 mouse_genomes_project 2 162213803 162237711 + MGP_C57BL6NJ_P0058817 Xkr7 protein_coding protein_coding MGP_C57BL6NJ_T0058655.1 MGP_C57BL6NJ_G0027058.1 mouse_genomes_project 2 159896455 159918563 + Gins1 protein_coding processed_transcript MGP_C57BL6NJ_T0058656.1 MGP_C57BL6NJ_G0027058.1 mouse_genomes_project 2 159900649 159923985 + MGP_C57BL6NJ_P0058656 Gins1 protein_coding protein_coding MGP_C57BL6NJ_T0058657.1 MGP_C57BL6NJ_G0027058.1 mouse_genomes_project 2 159900672 159918757 + Gins1 protein_coding processed_transcript MGP_C57BL6NJ_T0058658.1 MGP_C57BL6NJ_G0027058.1 mouse_genomes_project 2 159905057 159920205 + Gins1 protein_coding processed_transcript MGP_C57BL6NJ_T0018262.1 MGP_C57BL6NJ_G0015831.1 mouse_genomes_project 2 92336684 92343525 - processed_transcript processed_transcript MGP_C57BL6NJ_T0054928.1 MGP_C57BL6NJ_G0026087.1 mouse_genomes_project 2 36226143 36227073 + MGP_C57BL6NJ_P0054928 Olfr344 protein_coding protein_coding MGP_C57BL6NJ_T0014165.1 MGP_C57BL6NJ_G0012210.1 mouse_genomes_project 2 165642152 165642698 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054448.1 MGP_C57BL6NJ_G0026011.1 mouse_genomes_project 2 31225681 31289831 + MGP_C57BL6NJ_P0054448 Lamc3 protein_coding protein_coding MGP_C57BL6NJ_T0054449.1 MGP_C57BL6NJ_G0026011.1 mouse_genomes_project 2 31225734 31291124 + MGP_C57BL6NJ_P0054449 Lamc3 protein_coding protein_coding MGP_C57BL6NJ_T0054450.1 MGP_C57BL6NJ_G0026011.1 mouse_genomes_project 2 31268381 31269020 + Lamc3 protein_coding processed_transcript MGP_C57BL6NJ_T0056224.1 MGP_C57BL6NJ_G0026400.1 mouse_genomes_project 2 90654871 90655840 + MGP_C57BL6NJ_P0056224 Olfr1093 protein_coding protein_coding MGP_C57BL6NJ_T0058726.1 MGP_C57BL6NJ_G0027077.1 mouse_genomes_project 2 161331259 161389042 + MGP_C57BL6NJ_P0058726 Csnk2a1 protein_coding protein_coding MGP_C57BL6NJ_T0058727.1 MGP_C57BL6NJ_G0027077.1 mouse_genomes_project 2 161331296 161379789 + Csnk2a1 protein_coding retained_intron MGP_C57BL6NJ_T0058728.1 MGP_C57BL6NJ_G0027077.1 mouse_genomes_project 2 161331316 161367117 + MGP_C57BL6NJ_P0058728 Csnk2a1 protein_coding protein_coding MGP_C57BL6NJ_T0058729.1 MGP_C57BL6NJ_G0027077.1 mouse_genomes_project 2 161331328 161363684 + MGP_C57BL6NJ_P0058729 Csnk2a1 protein_coding protein_coding MGP_C57BL6NJ_T0058730.1 MGP_C57BL6NJ_G0027077.1 mouse_genomes_project 2 161331333 161359216 + Csnk2a1 protein_coding retained_intron MGP_C57BL6NJ_T0013733.1 MGP_C57BL6NJ_G0011778.1 mouse_genomes_project 2 2059952 2060951 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052935.1 MGP_C57BL6NJ_G0025751.1 mouse_genomes_project 2 7448280 7589382 - MGP_C57BL6NJ_P0052935 Taf3 protein_coding protein_coding MGP_C57BL6NJ_T0052936.1 MGP_C57BL6NJ_G0025751.1 mouse_genomes_project 2 7449022 7476930 - Taf3 protein_coding processed_transcript MGP_C57BL6NJ_T0052937.1 MGP_C57BL6NJ_G0025751.1 mouse_genomes_project 2 7449807 7452566 - MGP_C57BL6NJ_P0052937 Taf3 protein_coding protein_coding MGP_C57BL6NJ_T0052938.1 MGP_C57BL6NJ_G0025751.1 mouse_genomes_project 2 7449809 7452140 - MGP_C57BL6NJ_P0052938 Taf3 protein_coding protein_coding MGP_C57BL6NJ_T0054520.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744960 - MGP_C57BL6NJ_P0054520 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054521.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744921 - MGP_C57BL6NJ_P0054521 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054522.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744948 - MGP_C57BL6NJ_P0054522 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054523.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744941 - MGP_C57BL6NJ_P0054523 Dnm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054524.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744942 - MGP_C57BL6NJ_P0054524 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054525.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691826 31744996 - MGP_C57BL6NJ_P0054525 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054526.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691833 31744892 - MGP_C57BL6NJ_P0054526 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054527.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31691852 31710316 - MGP_C57BL6NJ_P0054527 Dnm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054528.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31692196 31744928 - MGP_C57BL6NJ_P0054528 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054529.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31692279 31693991 - Dnm1 protein_coding retained_intron MGP_C57BL6NJ_T0054530.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31692830 31696279 - MGP_C57BL6NJ_P0054530 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054531.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31692834 31744960 - MGP_C57BL6NJ_P0054531 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054532.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31693205 31696249 - MGP_C57BL6NJ_P0054532 Dnm1 protein_coding protein_coding MGP_C57BL6NJ_T0054533.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31693618 31696245 - MGP_C57BL6NJ_P0054533 Dnm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054534.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31695582 31707034 - Dnm1 protein_coding processed_transcript MGP_C57BL6NJ_T0054535.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31695597 31696433 - Dnm1 protein_coding retained_intron MGP_C57BL6NJ_T0054536.1 MGP_C57BL6NJ_G0026020.1 mouse_genomes_project 2 31731296 31744909 - MGP_C57BL6NJ_P0054536 Dnm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053491.1 MGP_C57BL6NJ_G0025846.1 mouse_genomes_project 2 23838241 23839412 - MGP_C57BL6NJ_P0053491 Cysrt1 protein_coding protein_coding MGP_C57BL6NJ_T0053492.1 MGP_C57BL6NJ_G0025846.1 mouse_genomes_project 2 23838412 23839321 - MGP_C57BL6NJ_P0053492 Cysrt1 protein_coding protein_coding MGP_C57BL6NJ_T0053493.1 MGP_C57BL6NJ_G0025846.1 mouse_genomes_project 2 23838580 23841876 - MGP_C57BL6NJ_P0053493 Cysrt1 protein_coding protein_coding MGP_C57BL6NJ_T0059507.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943699 174014908 + Pkig protein_coding retained_intron MGP_C57BL6NJ_T0059508.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943699 174017308 + MGP_C57BL6NJ_P0059508 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059509.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943712 174017304 + MGP_C57BL6NJ_P0059509 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059510.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943728 174016838 + MGP_C57BL6NJ_P0059510 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059511.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943771 174012348 + MGP_C57BL6NJ_P0059511 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059512.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943790 174016941 + MGP_C57BL6NJ_P0059512 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059513.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173943793 174016668 + MGP_C57BL6NJ_P0059513 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059514.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173946812 174016623 + MGP_C57BL6NJ_P0059514 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0059515.1 MGP_C57BL6NJ_G0027251.1 mouse_genomes_project 2 173985532 174017302 + MGP_C57BL6NJ_P0059515 Pkig protein_coding protein_coding MGP_C57BL6NJ_T0058856.1 MGP_C57BL6NJ_G0027119.1 mouse_genomes_project 2 162731427 162734097 + MGP_C57BL6NJ_P0058856 4930404H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0056078.1 MGP_C57BL6NJ_G0026318.1 mouse_genomes_project 2 87924820 88010363 - MGP_C57BL6NJ_P0056078 protein_coding protein_coding MGP_C57BL6NJ_T0052819.1 MGP_C57BL6NJ_G0025730.1 mouse_genomes_project 2 1791546 1877393 + MGP_C57BL6NJ_P0052819 Bend7 protein_coding protein_coding MGP_C57BL6NJ_T0052820.1 MGP_C57BL6NJ_G0025730.1 mouse_genomes_project 2 1791549 1865765 + MGP_C57BL6NJ_P0052820 Bend7 protein_coding protein_coding MGP_C57BL6NJ_T0052821.1 MGP_C57BL6NJ_G0025730.1 mouse_genomes_project 2 1791860 1877755 + MGP_C57BL6NJ_P0052821 Bend7 protein_coding protein_coding MGP_C57BL6NJ_T0052822.1 MGP_C57BL6NJ_G0025730.1 mouse_genomes_project 2 1829553 1878972 + Bend7 protein_coding processed_transcript MGP_C57BL6NJ_T0018357.1 MGP_C57BL6NJ_G0015876.1 mouse_genomes_project 2 166491202 166517655 - 5430405H02Rik processed_transcript antisense MGP_C57BL6NJ_T0018358.1 MGP_C57BL6NJ_G0015876.1 mouse_genomes_project 2 166499281 166517637 - 5430405H02Rik processed_transcript antisense MGP_C57BL6NJ_T0018359.1 MGP_C57BL6NJ_G0015876.1 mouse_genomes_project 2 166499281 166517586 - 5430405H02Rik processed_transcript antisense MGP_C57BL6NJ_T0058417.1 MGP_C57BL6NJ_G0026991.1 mouse_genomes_project 2 148504473 148669523 - MGP_C57BL6NJ_P0058417 Sel1l2 protein_coding protein_coding MGP_C57BL6NJ_T0058418.1 MGP_C57BL6NJ_G0026991.1 mouse_genomes_project 2 148566798 148571380 - Sel1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0058419.1 MGP_C57BL6NJ_G0026991.1 mouse_genomes_project 2 148566803 148669525 - MGP_C57BL6NJ_P0058419 Sel1l2 protein_coding protein_coding MGP_C57BL6NJ_T0055269.1 MGP_C57BL6NJ_G0026164.1 mouse_genomes_project 2 59385665 59386098 + MGP_C57BL6NJ_P0055269 protein_coding protein_coding MGP_C57BL6NJ_T0011774.1 MGP_C57BL6NJ_G0009859.1 mouse_genomes_project 2 134866891 134867183 - Gm22613 misc_RNA misc_RNA MGP_C57BL6NJ_T0057617.1 MGP_C57BL6NJ_G0026807.1 mouse_genomes_project 2 128246376 128267608 + MGP_C57BL6NJ_P0057617 Map1a protein_coding protein_coding MGP_C57BL6NJ_T0057618.1 MGP_C57BL6NJ_G0026807.1 mouse_genomes_project 2 128246546 128247850 + Map1a protein_coding processed_transcript MGP_C57BL6NJ_T0057619.1 MGP_C57BL6NJ_G0026807.1 mouse_genomes_project 2 128252227 128266209 + MGP_C57BL6NJ_P0057619 Map1a protein_coding protein_coding MGP_C57BL6NJ_T0057620.1 MGP_C57BL6NJ_G0026807.1 mouse_genomes_project 2 128252236 128264392 + Map1a protein_coding processed_transcript MGP_C57BL6NJ_T0057034.1 MGP_C57BL6NJ_G0026658.1 mouse_genomes_project 2 113097833 113105985 + MGP_C57BL6NJ_P0057034 Kcna4 protein_coding protein_coding MGP_C57BL6NJ_T0057035.1 MGP_C57BL6NJ_G0026658.1 mouse_genomes_project 2 113098589 113101955 + Kcna4 protein_coding processed_transcript MGP_C57BL6NJ_T0004082.1 MGP_C57BL6NJ_G0003635.1 mouse_genomes_project 2 25859900 25863469 + Gm13398 antisense antisense MGP_C57BL6NJ_T0100229.1 MGP_C57BL6NJ_G0038275.1 mouse_genomes_project 2 173040239 173040397 - Gm24478 snRNA snRNA MGP_C57BL6NJ_T0007509.1 MGP_C57BL6NJ_G0006156.1 mouse_genomes_project 2 145223951 145224701 + Gm28214 lincRNA lincRNA MGP_C57BL6NJ_T0103027.1 MGP_C57BL6NJ_G0040821.1 mouse_genomes_project 2 91505846 91506702 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0060094.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191926685 191927697 - Psma7 protein_coding retained_intron MGP_C57BL6NJ_T0060095.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191926686 191932708 - Psma7 protein_coding retained_intron MGP_C57BL6NJ_T0060096.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191926686 191932746 - MGP_C57BL6NJ_P0060096 Psma7 protein_coding protein_coding MGP_C57BL6NJ_T0060097.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191927131 191927801 - Psma7 protein_coding retained_intron MGP_C57BL6NJ_T0060098.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191927946 191929134 - Psma7 protein_coding retained_intron MGP_C57BL6NJ_T0060099.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191928381 191930458 - Psma7 protein_coding retained_intron MGP_C57BL6NJ_T0060100.1 MGP_C57BL6NJ_G0027404.1 mouse_genomes_project 2 191929608 191932698 - Psma7 protein_coding processed_transcript MGP_C57BL6NJ_T0103024.1 MGP_C57BL6NJ_G0040818.1 mouse_genomes_project 2 90392058 90393001 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0056874.1 MGP_C57BL6NJ_G0026625.1 mouse_genomes_project 2 108976733 109007829 - MGP_C57BL6NJ_P0056874 Cat protein_coding protein_coding MGP_C57BL6NJ_T0056875.1 MGP_C57BL6NJ_G0026625.1 mouse_genomes_project 2 108977479 109007794 - MGP_C57BL6NJ_P0056875 Cat protein_coding protein_coding MGP_C57BL6NJ_T0057118.1 MGP_C57BL6NJ_G0026701.1 mouse_genomes_project 2 118271013 118271967 - MGP_C57BL6NJ_P0057118 Olfr1312 protein_coding protein_coding MGP_C57BL6NJ_T0057767.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129924242 129969699 + MGP_C57BL6NJ_P0057767 Sqrdl protein_coding protein_coding MGP_C57BL6NJ_T0057768.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129924394 129944425 + MGP_C57BL6NJ_P0057768 Sqrdl protein_coding protein_coding MGP_C57BL6NJ_T0057769.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129924396 129944432 + MGP_C57BL6NJ_P0057769 Sqrdl protein_coding protein_coding MGP_C57BL6NJ_T0057770.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129924414 129927549 + Sqrdl protein_coding processed_transcript MGP_C57BL6NJ_T0057771.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129930713 129960173 + Sqrdl protein_coding retained_intron MGP_C57BL6NJ_T0057772.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129941335 129969683 + MGP_C57BL6NJ_P0057772 Sqrdl protein_coding protein_coding MGP_C57BL6NJ_T0057773.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129944280 129947355 + Sqrdl protein_coding processed_transcript MGP_C57BL6NJ_T0057774.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129944297 129969468 + MGP_C57BL6NJ_P0057774 Sqrdl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057775.1 MGP_C57BL6NJ_G0026842.1 mouse_genomes_project 2 129959172 129969689 + MGP_C57BL6NJ_P0057775 Sqrdl protein_coding protein_coding MGP_C57BL6NJ_T0014144.1 MGP_C57BL6NJ_G0012189.1 mouse_genomes_project 2 159448627 159449382 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013935.1 MGP_C57BL6NJ_G0011980.1 mouse_genomes_project 2 80725757 80726551 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058208.1 MGP_C57BL6NJ_G0026945.1 mouse_genomes_project 2 138820309 138824025 - MGP_C57BL6NJ_P0058208 Spef1 protein_coding protein_coding MGP_C57BL6NJ_T0058790.1 MGP_C57BL6NJ_G0027103.1 mouse_genomes_project 2 161997860 162004757 + Tpx2 protein_coding processed_transcript MGP_C57BL6NJ_T0058791.1 MGP_C57BL6NJ_G0027103.1 mouse_genomes_project 2 161997998 162054872 + MGP_C57BL6NJ_P0058791 Tpx2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058792.1 MGP_C57BL6NJ_G0027103.1 mouse_genomes_project 2 162020879 162041815 + Tpx2 protein_coding retained_intron MGP_C57BL6NJ_T0058793.1 MGP_C57BL6NJ_G0027103.1 mouse_genomes_project 2 162043014 162045105 + Tpx2 protein_coding retained_intron MGP_C57BL6NJ_T0014103.1 MGP_C57BL6NJ_G0012148.1 mouse_genomes_project 2 142622443 142622756 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052939.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7599296 7623447 - MGP_C57BL6NJ_P0052939 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0052940.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7599306 7623502 - MGP_C57BL6NJ_P0052940 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0052941.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7599310 7623464 - MGP_C57BL6NJ_P0052941 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0052942.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7606356 7622879 - MGP_C57BL6NJ_P0052942 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0052943.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7606500 7623196 - MGP_C57BL6NJ_P0052943 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0052944.1 MGP_C57BL6NJ_G0025752.1 mouse_genomes_project 2 7607178 7623075 - MGP_C57BL6NJ_P0052944 Atp5c1 protein_coding protein_coding MGP_C57BL6NJ_T0057526.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127630780 127646141 - MGP_C57BL6NJ_P0057526 Cdan1 protein_coding protein_coding MGP_C57BL6NJ_T0057527.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127631148 127646142 - MGP_C57BL6NJ_P0057527 Cdan1 protein_coding protein_coding MGP_C57BL6NJ_T0057528.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127632809 127770637 - Cdan1 protein_coding processed_transcript MGP_C57BL6NJ_T0057529.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127633244 127635177 - Cdan1 protein_coding processed_transcript MGP_C57BL6NJ_T0057530.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127637019 127639079 - Cdan1 protein_coding retained_intron MGP_C57BL6NJ_T0057531.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127640234 127642601 - Cdan1 protein_coding retained_intron MGP_C57BL6NJ_T0057532.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127642541 127643262 - Cdan1 protein_coding retained_intron MGP_C57BL6NJ_T0057533.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127643251 127646130 - Cdan1 protein_coding processed_transcript MGP_C57BL6NJ_T0057534.1 MGP_C57BL6NJ_G0026794.1 mouse_genomes_project 2 127644565 127646114 - Cdan1 protein_coding processed_transcript MGP_C57BL6NJ_T0060136.1 MGP_C57BL6NJ_G0027412.1 mouse_genomes_project 2 192161950 192176115 - MGP_C57BL6NJ_P0060136 Cables2 protein_coding protein_coding MGP_C57BL6NJ_T0060137.1 MGP_C57BL6NJ_G0027412.1 mouse_genomes_project 2 192161953 192176082 - Cables2 protein_coding retained_intron MGP_C57BL6NJ_T0060138.1 MGP_C57BL6NJ_G0027412.1 mouse_genomes_project 2 192163019 192164384 - Cables2 protein_coding retained_intron MGP_C57BL6NJ_T0060139.1 MGP_C57BL6NJ_G0027412.1 mouse_genomes_project 2 192164750 192176115 - Cables2 protein_coding retained_intron MGP_C57BL6NJ_T0060140.1 MGP_C57BL6NJ_G0027412.1 mouse_genomes_project 2 192165473 192176065 - Cables2 protein_coding retained_intron MGP_C57BL6NJ_T0010716.1 MGP_C57BL6NJ_G0008801.1 mouse_genomes_project 2 179570945 179571009 - Mir7004 miRNA miRNA MGP_C57BL6NJ_T0058450.1 MGP_C57BL6NJ_G0026999.1 mouse_genomes_project 2 152425663 152455411 + MGP_C57BL6NJ_P0058450 Dstn protein_coding protein_coding MGP_C57BL6NJ_T0058128.1 MGP_C57BL6NJ_G0026929.1 mouse_genomes_project 2 138182953 138183837 + MGP_C57BL6NJ_P0058128 Oxt protein_coding protein_coding MGP_C57BL6NJ_T0010670.1 MGP_C57BL6NJ_G0008755.1 mouse_genomes_project 2 99046344 99046444 - Mir670 miRNA miRNA MGP_C57BL6NJ_T0059954.1 MGP_C57BL6NJ_G0027363.1 mouse_genomes_project 2 183554500 183557123 + MGP_C57BL6NJ_P0059954 Mc3r protein_coding protein_coding MGP_C57BL6NJ_T0056396.1 MGP_C57BL6NJ_G0026539.1 mouse_genomes_project 2 94369583 94370406 + MGP_C57BL6NJ_P0056396 Olfr1261 protein_coding protein_coding MGP_C57BL6NJ_T0058383.1 MGP_C57BL6NJ_G0026980.1 mouse_genomes_project 2 144722518 144793058 + MGP_C57BL6NJ_P0058383 Snap25 protein_coding protein_coding MGP_C57BL6NJ_T0058384.1 MGP_C57BL6NJ_G0026980.1 mouse_genomes_project 2 144722519 144773615 + Snap25 protein_coding retained_intron MGP_C57BL6NJ_T0058385.1 MGP_C57BL6NJ_G0026980.1 mouse_genomes_project 2 144722543 144791981 + MGP_C57BL6NJ_P0058385 Snap25 protein_coding protein_coding MGP_C57BL6NJ_T0014058.1 MGP_C57BL6NJ_G0012103.1 mouse_genomes_project 2 121444942 121445836 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059940.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181476436 181568781 - MGP_C57BL6NJ_P0059940 Bcas1 protein_coding protein_coding MGP_C57BL6NJ_T0059941.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181476588 181561626 - MGP_C57BL6NJ_P0059941 Bcas1 protein_coding protein_coding MGP_C57BL6NJ_T0059942.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181476589 181568781 - MGP_C57BL6NJ_P0059942 Bcas1 protein_coding protein_coding MGP_C57BL6NJ_T0059943.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181477376 181479186 - Bcas1 protein_coding processed_transcript MGP_C57BL6NJ_T0059944.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181477390 181486551 - Bcas1 protein_coding processed_transcript MGP_C57BL6NJ_T0059945.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181477534 181479241 - Bcas1 protein_coding processed_transcript MGP_C57BL6NJ_T0059946.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181522583 181523616 - Bcas1 protein_coding processed_transcript MGP_C57BL6NJ_T0059947.1 MGP_C57BL6NJ_G0027357.1 mouse_genomes_project 2 181537411 181568781 - Bcas1 protein_coding processed_transcript MGP_C57BL6NJ_T0010676.1 MGP_C57BL6NJ_G0008761.1 mouse_genomes_project 2 119793697 119793811 - Gm44465 miRNA miRNA MGP_C57BL6NJ_T0060056.1 MGP_C57BL6NJ_G0027393.1 mouse_genomes_project 2 186017121 186026520 - MGP_C57BL6NJ_P0060056 Slmo2 protein_coding protein_coding MGP_C57BL6NJ_T0060057.1 MGP_C57BL6NJ_G0027393.1 mouse_genomes_project 2 186017726 186026591 - MGP_C57BL6NJ_P0060057 Slmo2 protein_coding protein_coding MGP_C57BL6NJ_T0060058.1 MGP_C57BL6NJ_G0027393.1 mouse_genomes_project 2 186022829 186026548 - Slmo2 protein_coding retained_intron MGP_C57BL6NJ_T0060059.1 MGP_C57BL6NJ_G0027393.1 mouse_genomes_project 2 186023038 186026588 - MGP_C57BL6NJ_P0060059 Slmo2 protein_coding protein_coding MGP_C57BL6NJ_T0100185.1 MGP_C57BL6NJ_G0038231.1 mouse_genomes_project 2 34504949 34505053 + Gm24905 snRNA snRNA MGP_C57BL6NJ_T0055252.1 MGP_C57BL6NJ_G0026159.1 mouse_genomes_project 2 56544444 56723498 + MGP_C57BL6NJ_P0055252 Kcnj3 protein_coding protein_coding MGP_C57BL6NJ_T0055253.1 MGP_C57BL6NJ_G0026159.1 mouse_genomes_project 2 56545630 56720878 + MGP_C57BL6NJ_P0055253 Kcnj3 protein_coding protein_coding MGP_C57BL6NJ_T0055254.1 MGP_C57BL6NJ_G0026159.1 mouse_genomes_project 2 56545639 56723493 + MGP_C57BL6NJ_P0055254 Kcnj3 protein_coding protein_coding MGP_C57BL6NJ_T0057141.1 MGP_C57BL6NJ_G0026712.1 mouse_genomes_project 2 118710450 118727628 + MGP_C57BL6NJ_P0057141 Emc7 protein_coding protein_coding MGP_C57BL6NJ_T0102999.1 MGP_C57BL6NJ_G0040793.1 mouse_genomes_project 2 35996241 35996694 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001163.1 MGP_C57BL6NJ_G0001069.1 mouse_genomes_project 2 9189333 9191436 - TEC TEC MGP_C57BL6NJ_T0004064.1 MGP_C57BL6NJ_G0003625.1 mouse_genomes_project 2 19700394 19723655 - Gm13327 antisense antisense MGP_C57BL6NJ_T0056195.1 MGP_C57BL6NJ_G0026373.1 mouse_genomes_project 2 89642837 89643770 + MGP_C57BL6NJ_P0056195 Olfr1036 protein_coding protein_coding MGP_C57BL6NJ_T0013909.1 MGP_C57BL6NJ_G0011954.1 mouse_genomes_project 2 70031845 70032384 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055750.1 MGP_C57BL6NJ_G0026250.1 mouse_genomes_project 2 75353958 75406528 - MGP_C57BL6NJ_P0055750 Sp3 protein_coding protein_coding MGP_C57BL6NJ_T0055751.1 MGP_C57BL6NJ_G0026250.1 mouse_genomes_project 2 75354179 75406508 - MGP_C57BL6NJ_P0055751 Sp3 protein_coding protein_coding MGP_C57BL6NJ_T0055752.1 MGP_C57BL6NJ_G0026250.1 mouse_genomes_project 2 75354183 75403626 - Sp3 protein_coding processed_transcript MGP_C57BL6NJ_T0055753.1 MGP_C57BL6NJ_G0026250.1 mouse_genomes_project 2 75357729 75360534 - Sp3 protein_coding processed_transcript MGP_C57BL6NJ_T0055754.1 MGP_C57BL6NJ_G0026250.1 mouse_genomes_project 2 75366092 75394806 - Sp3 protein_coding processed_transcript MGP_C57BL6NJ_T0058237.1 MGP_C57BL6NJ_G0026951.1 mouse_genomes_project 2 138953995 139010983 - MGP_C57BL6NJ_P0058237 Rnf24 protein_coding protein_coding MGP_C57BL6NJ_T0058238.1 MGP_C57BL6NJ_G0026951.1 mouse_genomes_project 2 138953996 138968841 - MGP_C57BL6NJ_P0058238 Rnf24 protein_coding protein_coding MGP_C57BL6NJ_T0058239.1 MGP_C57BL6NJ_G0026951.1 mouse_genomes_project 2 138953998 138984522 - MGP_C57BL6NJ_P0058239 Rnf24 protein_coding protein_coding MGP_C57BL6NJ_T0058240.1 MGP_C57BL6NJ_G0026951.1 mouse_genomes_project 2 138958580 139010964 - MGP_C57BL6NJ_P0058240 Rnf24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058241.1 MGP_C57BL6NJ_G0026951.1 mouse_genomes_project 2 138968083 139010994 - Rnf24 protein_coding retained_intron MGP_C57BL6NJ_T0014207.1 MGP_C57BL6NJ_G0012252.1 mouse_genomes_project 2 188805807 188806362 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004185.1 MGP_C57BL6NJ_G0003713.1 mouse_genomes_project 2 98135890 98151772 + Gm13807 antisense antisense MGP_C57BL6NJ_T0056376.1 MGP_C57BL6NJ_G0026527.1 mouse_genomes_project 2 94058552 94059507 - MGP_C57BL6NJ_P0056376 protein_coding protein_coding MGP_C57BL6NJ_T0057508.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127500024 127505307 - MGP_C57BL6NJ_P0057508 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057509.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127500024 127505142 - MGP_C57BL6NJ_P0057509 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057510.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127500024 127505297 - MGP_C57BL6NJ_P0057510 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057511.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127500024 127505102 - MGP_C57BL6NJ_P0057511 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057512.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127500605 127503759 - MGP_C57BL6NJ_P0057512 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057513.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127501756 127505295 - MGP_C57BL6NJ_P0057513 Lrrc57 protein_coding protein_coding MGP_C57BL6NJ_T0057514.1 MGP_C57BL6NJ_G0026791.1 mouse_genomes_project 2 127504604 127505089 - Lrrc57 protein_coding retained_intron MGP_C57BL6NJ_T0014119.1 MGP_C57BL6NJ_G0012164.1 mouse_genomes_project 2 151975014 151975663 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101506.1 MGP_C57BL6NJ_G0039552.1 mouse_genomes_project 2 102218098 102218227 - Gm23317 snoRNA snoRNA MGP_C57BL6NJ_T0018382.1 MGP_C57BL6NJ_G0015886.1 mouse_genomes_project 2 179736687 179738653 + Gm14261 processed_transcript processed_transcript MGP_C57BL6NJ_T0056855.1 MGP_C57BL6NJ_G0026622.1 mouse_genomes_project 2 108576009 108594979 + MGP_C57BL6NJ_P0056855 Apip protein_coding protein_coding MGP_C57BL6NJ_T0056856.1 MGP_C57BL6NJ_G0026622.1 mouse_genomes_project 2 108576029 108594966 + Apip protein_coding processed_transcript MGP_C57BL6NJ_T0056857.1 MGP_C57BL6NJ_G0026622.1 mouse_genomes_project 2 108585291 108594125 + Apip protein_coding processed_transcript MGP_C57BL6NJ_T0056858.1 MGP_C57BL6NJ_G0026622.1 mouse_genomes_project 2 108594170 108594973 + Apip protein_coding processed_transcript MGP_C57BL6NJ_T0018201.1 MGP_C57BL6NJ_G0015789.1 mouse_genomes_project 2 16099506 16101927 - 1810059C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0099077.1 MGP_C57BL6NJ_G0037141.1 mouse_genomes_project 2 111690737 111690853 + n-R5s201 rRNA rRNA MGP_C57BL6NJ_T0052752.1 MGP_C57BL6NJ_G0025721.1 mouse_genomes_project 2 302706 332781 - MGP_C57BL6NJ_P0052752 Olah protein_coding protein_coding MGP_C57BL6NJ_T0052753.1 MGP_C57BL6NJ_G0025721.1 mouse_genomes_project 2 302711 360625 - MGP_C57BL6NJ_P0052753 Olah protein_coding protein_coding MGP_C57BL6NJ_T0052754.1 MGP_C57BL6NJ_G0025721.1 mouse_genomes_project 2 302741 332759 - MGP_C57BL6NJ_P0052754 Olah protein_coding protein_coding MGP_C57BL6NJ_T0007429.1 MGP_C57BL6NJ_G0006093.1 mouse_genomes_project 2 96665124 96718584 - lincRNA lincRNA MGP_C57BL6NJ_T0013856.1 MGP_C57BL6NJ_G0011901.1 mouse_genomes_project 2 51388647 51389059 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013748.1 MGP_C57BL6NJ_G0011793.1 mouse_genomes_project 2 9762501 9765647 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018196.1 MGP_C57BL6NJ_G0015787.1 mouse_genomes_project 2 11900104 11903707 - Stamos processed_transcript antisense MGP_C57BL6NJ_T0018197.1 MGP_C57BL6NJ_G0015787.1 mouse_genomes_project 2 11902260 11903621 - Stamos processed_transcript retained_intron MGP_C57BL6NJ_T0102219.1 MGP_C57BL6NJ_G0040222.1 mouse_genomes_project 2 77424134 77424740 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014060.1 MGP_C57BL6NJ_G0012105.1 mouse_genomes_project 2 123818504 123819063 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018248.1 MGP_C57BL6NJ_G0015818.1 mouse_genomes_project 2 72169363 72172859 + Gm13631 processed_transcript processed_transcript MGP_C57BL6NJ_T0053036.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9794949 9998112 - MGP_C57BL6NJ_P0053036 Itga8 protein_coding protein_coding MGP_C57BL6NJ_T0053037.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9795796 9998082 - MGP_C57BL6NJ_P0053037 Itga8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053038.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9797387 9823119 - MGP_C57BL6NJ_P0053038 Itga8 protein_coding protein_coding MGP_C57BL6NJ_T0053039.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9867844 9878492 - Itga8 protein_coding retained_intron MGP_C57BL6NJ_T0053040.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9905833 9931523 - Itga8 protein_coding processed_transcript MGP_C57BL6NJ_T0053041.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9943382 9998112 - Itga8 protein_coding retained_intron MGP_C57BL6NJ_T0053042.1 MGP_C57BL6NJ_G0025765.1 mouse_genomes_project 2 9983153 9997778 - Itga8 protein_coding processed_transcript MGP_C57BL6NJ_T0010674.1 MGP_C57BL6NJ_G0008759.1 mouse_genomes_project 2 111686462 111686587 + Gm22002 miRNA miRNA MGP_C57BL6NJ_T0004037.1 MGP_C57BL6NJ_G0003602.1 mouse_genomes_project 2 1515011 1523248 - Gm13175 antisense antisense MGP_C57BL6NJ_T0052750.1 MGP_C57BL6NJ_G0025720.1 mouse_genomes_project 2 287097 301496 + MGP_C57BL6NJ_P0052750 Acbd7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052751.1 MGP_C57BL6NJ_G0025720.1 mouse_genomes_project 2 296892 301718 + MGP_C57BL6NJ_P0052751 Acbd7 protein_coding protein_coding MGP_C57BL6NJ_T0007410.1 MGP_C57BL6NJ_G0006076.1 mouse_genomes_project 2 77307210 77307853 + Gm14426 lincRNA lincRNA MGP_C57BL6NJ_T0103051.1 MGP_C57BL6NJ_G0040845.1 mouse_genomes_project 2 126051070 126051311 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099085.1 MGP_C57BL6NJ_G0037149.1 mouse_genomes_project 2 176811239 176811344 + Gm22687 rRNA rRNA MGP_C57BL6NJ_T0056267.1 MGP_C57BL6NJ_G0026435.1 mouse_genomes_project 2 91627798 91628381 + MGP_C57BL6NJ_P0056267 protein_coding protein_coding MGP_C57BL6NJ_T0013783.1 MGP_C57BL6NJ_G0011828.1 mouse_genomes_project 2 21555793 21557440 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054593.1 MGP_C57BL6NJ_G0026030.1 mouse_genomes_project 2 31989928 31990939 + Pip5kl1 protein_coding processed_transcript MGP_C57BL6NJ_T0054594.1 MGP_C57BL6NJ_G0026030.1 mouse_genomes_project 2 31990849 32001762 + MGP_C57BL6NJ_P0054594 Pip5kl1 protein_coding protein_coding MGP_C57BL6NJ_T0054595.1 MGP_C57BL6NJ_G0026030.1 mouse_genomes_project 2 31990974 32001751 + MGP_C57BL6NJ_P0054595 Pip5kl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054596.1 MGP_C57BL6NJ_G0026030.1 mouse_genomes_project 2 31997906 32001752 + Pip5kl1 protein_coding retained_intron MGP_C57BL6NJ_T0056789.1 MGP_C57BL6NJ_G0026608.1 mouse_genomes_project 2 101210124 102618479 + MGP_C57BL6NJ_P0056789 Lrrc4c protein_coding protein_coding MGP_C57BL6NJ_T0056790.1 MGP_C57BL6NJ_G0026608.1 mouse_genomes_project 2 101210171 102617796 + MGP_C57BL6NJ_P0056790 Lrrc4c protein_coding protein_coding MGP_C57BL6NJ_T0056791.1 MGP_C57BL6NJ_G0026608.1 mouse_genomes_project 2 102437678 102618477 + MGP_C57BL6NJ_P0056791 Lrrc4c protein_coding protein_coding MGP_C57BL6NJ_T0056792.1 MGP_C57BL6NJ_G0026608.1 mouse_genomes_project 2 102438110 102615876 + MGP_C57BL6NJ_P0056792 Lrrc4c protein_coding protein_coding MGP_C57BL6NJ_T0014081.1 MGP_C57BL6NJ_G0012126.1 mouse_genomes_project 2 135088261 135090104 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054330.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30037950 30056984 + MGP_C57BL6NJ_P0054330 Ntmt1 protein_coding protein_coding MGP_C57BL6NJ_T0054331.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038065 30056968 + MGP_C57BL6NJ_P0054331 Ntmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054332.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038066 30056336 + MGP_C57BL6NJ_P0054332 Ntmt1 protein_coding protein_coding MGP_C57BL6NJ_T0054333.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038081 30050240 + Ntmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0054334.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038118 30050704 + Ntmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0054335.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038237 30056503 + MGP_C57BL6NJ_P0054335 Ntmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054336.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30038314 30054557 + MGP_C57BL6NJ_P0054336 Ntmt1 protein_coding protein_coding MGP_C57BL6NJ_T0054337.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30052004 30054677 + MGP_C57BL6NJ_P0054337 Ntmt1 protein_coding protein_coding MGP_C57BL6NJ_T0054338.1 MGP_C57BL6NJ_G0025992.1 mouse_genomes_project 2 30053710 30056510 + MGP_C57BL6NJ_P0054338 Ntmt1 protein_coding protein_coding MGP_C57BL6NJ_T0058582.1 MGP_C57BL6NJ_G0027028.1 mouse_genomes_project 2 157191955 157195678 - MGP_C57BL6NJ_P0058582 Thbd protein_coding protein_coding MGP_C57BL6NJ_T0057122.1 MGP_C57BL6NJ_G0026705.1 mouse_genomes_project 2 118485251 118492880 + MGP_C57BL6NJ_P0057122 Lpcat4 protein_coding protein_coding MGP_C57BL6NJ_T0057123.1 MGP_C57BL6NJ_G0026705.1 mouse_genomes_project 2 118487265 118489826 + Lpcat4 protein_coding processed_transcript MGP_C57BL6NJ_T0057124.1 MGP_C57BL6NJ_G0026705.1 mouse_genomes_project 2 118487752 118488542 + Lpcat4 protein_coding processed_transcript MGP_C57BL6NJ_T0057125.1 MGP_C57BL6NJ_G0026705.1 mouse_genomes_project 2 118490350 118492742 + Lpcat4 protein_coding processed_transcript MGP_C57BL6NJ_T0014141.1 MGP_C57BL6NJ_G0012186.1 mouse_genomes_project 2 159027102 159028097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103036.1 MGP_C57BL6NJ_G0040830.1 mouse_genomes_project 2 92460601 92461744 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059153.1 MGP_C57BL6NJ_G0027183.1 mouse_genomes_project 2 165736163 165737922 + MGP_C57BL6NJ_P0059153 Romo1 protein_coding protein_coding MGP_C57BL6NJ_T0059154.1 MGP_C57BL6NJ_G0027183.1 mouse_genomes_project 2 165736357 165737919 + MGP_C57BL6NJ_P0059154 Romo1 protein_coding protein_coding MGP_C57BL6NJ_T0059155.1 MGP_C57BL6NJ_G0027183.1 mouse_genomes_project 2 165736361 165737908 + MGP_C57BL6NJ_P0059155 Romo1 protein_coding protein_coding MGP_C57BL6NJ_T0059156.1 MGP_C57BL6NJ_G0027183.1 mouse_genomes_project 2 165736364 165737919 + MGP_C57BL6NJ_P0059156 Romo1 protein_coding protein_coding MGP_C57BL6NJ_T0001223.1 MGP_C57BL6NJ_G0001129.1 mouse_genomes_project 2 122554136 122555068 - TEC TEC MGP_C57BL6NJ_T0057248.1 MGP_C57BL6NJ_G0026738.1 mouse_genomes_project 2 125301488 125345172 + MGP_C57BL6NJ_P0057248 Bub1b protein_coding protein_coding MGP_C57BL6NJ_T0057249.1 MGP_C57BL6NJ_G0026738.1 mouse_genomes_project 2 125303434 125313098 + Bub1b protein_coding retained_intron MGP_C57BL6NJ_T0057250.1 MGP_C57BL6NJ_G0026738.1 mouse_genomes_project 2 125334185 125335411 + Bub1b protein_coding retained_intron MGP_C57BL6NJ_T0057251.1 MGP_C57BL6NJ_G0026738.1 mouse_genomes_project 2 125335120 125340330 + Bub1b protein_coding retained_intron MGP_C57BL6NJ_T0007494.1 MGP_C57BL6NJ_G0006144.1 mouse_genomes_project 2 135880693 135881605 + Gm14010 lincRNA lincRNA MGP_C57BL6NJ_T0007426.1 MGP_C57BL6NJ_G0006090.1 mouse_genomes_project 2 88598569 88609413 + Gm13715 lincRNA lincRNA MGP_C57BL6NJ_T0058767.1 MGP_C57BL6NJ_G0027097.1 mouse_genomes_project 2 161760305 161768562 + MGP_C57BL6NJ_P0058767 Rem1 protein_coding protein_coding MGP_C57BL6NJ_T0058768.1 MGP_C57BL6NJ_G0027097.1 mouse_genomes_project 2 161760307 161761671 + MGP_C57BL6NJ_P0058768 Rem1 protein_coding protein_coding MGP_C57BL6NJ_T0058769.1 MGP_C57BL6NJ_G0027097.1 mouse_genomes_project 2 161766334 161768566 + Rem1 protein_coding retained_intron MGP_C57BL6NJ_T0053623.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134933 24139056 - MGP_C57BL6NJ_P0053623 C8g protein_coding protein_coding MGP_C57BL6NJ_T0053624.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134933 24140162 - MGP_C57BL6NJ_P0053624 C8g protein_coding protein_coding MGP_C57BL6NJ_T0053625.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134938 24138698 - C8g protein_coding processed_transcript MGP_C57BL6NJ_T0053626.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134938 24135785 - C8g protein_coding processed_transcript MGP_C57BL6NJ_T0053627.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134938 24138678 - C8g protein_coding processed_transcript MGP_C57BL6NJ_T0053628.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24134940 24138686 - C8g protein_coding processed_transcript MGP_C57BL6NJ_T0053629.1 MGP_C57BL6NJ_G0025868.1 mouse_genomes_project 2 24135179 24138557 - C8g protein_coding processed_transcript MGP_C57BL6NJ_T0102990.1 MGP_C57BL6NJ_G0040784.1 mouse_genomes_project 2 9578844 9588556 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0055867.1 MGP_C57BL6NJ_G0026279.1 mouse_genomes_project 2 78627107 78634626 - MGP_C57BL6NJ_P0055867 Ttc30a1 protein_coding protein_coding MGP_C57BL6NJ_T0100194.1 MGP_C57BL6NJ_G0038240.1 mouse_genomes_project 2 73717692 73717793 - Gm23166 snRNA snRNA MGP_C57BL6NJ_T0004238.1 MGP_C57BL6NJ_G0003748.1 mouse_genomes_project 2 138808751 138820620 + Gm14232 antisense antisense MGP_C57BL6NJ_T0011785.1 MGP_C57BL6NJ_G0009870.1 mouse_genomes_project 2 177780982 177781171 + Gm27494 misc_RNA misc_RNA MGP_C57BL6NJ_T0057800.1 MGP_C57BL6NJ_G0026847.1 mouse_genomes_project 2 132427096 132508397 + MGP_C57BL6NJ_P0057800 Slc12a1 protein_coding protein_coding MGP_C57BL6NJ_T0057801.1 MGP_C57BL6NJ_G0026847.1 mouse_genomes_project 2 132427171 132443032 + Slc12a1 protein_coding retained_intron MGP_C57BL6NJ_T0057802.1 MGP_C57BL6NJ_G0026847.1 mouse_genomes_project 2 132427191 132508397 + MGP_C57BL6NJ_P0057802 Slc12a1 protein_coding protein_coding MGP_C57BL6NJ_T0057803.1 MGP_C57BL6NJ_G0026847.1 mouse_genomes_project 2 132427191 132508394 + MGP_C57BL6NJ_P0057803 Slc12a1 protein_coding protein_coding MGP_C57BL6NJ_T0057621.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128267322 128318110 - MGP_C57BL6NJ_P0057621 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057622.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128267322 128318113 - MGP_C57BL6NJ_P0057622 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057623.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128267674 128318176 - MGP_C57BL6NJ_P0057623 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057624.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128268431 128318096 - MGP_C57BL6NJ_P0057624 Ppip5k1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057625.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128268431 128317991 - MGP_C57BL6NJ_P0057625 Ppip5k1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057626.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128279917 128297017 - MGP_C57BL6NJ_P0057626 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057627.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128279952 128294356 - MGP_C57BL6NJ_P0057627 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057628.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128280030 128296587 - MGP_C57BL6NJ_P0057628 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057629.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128285907 128297013 - MGP_C57BL6NJ_P0057629 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057630.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128286686 128296877 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057631.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128291924 128317857 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057632.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128294075 128303484 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057633.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128300211 128318091 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057634.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128305029 128310282 - MGP_C57BL6NJ_P0057634 Ppip5k1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057635.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128308118 128318110 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057636.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128308538 128317855 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057637.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128309682 128317852 - Ppip5k1 protein_coding retained_intron MGP_C57BL6NJ_T0057638.1 MGP_C57BL6NJ_G0026808.1 mouse_genomes_project 2 128311967 128318064 - MGP_C57BL6NJ_P0057638 Ppip5k1 protein_coding protein_coding MGP_C57BL6NJ_T0057087.1 MGP_C57BL6NJ_G0026672.1 mouse_genomes_project 2 117225197 117246097 - MGP_C57BL6NJ_P0057087 Gm15130 protein_coding protein_coding MGP_C57BL6NJ_T0057106.1 MGP_C57BL6NJ_G0026689.1 mouse_genomes_project 2 117823322 117824261 - MGP_C57BL6NJ_P0057106 Olfr1297 protein_coding protein_coding MGP_C57BL6NJ_T0013825.1 MGP_C57BL6NJ_G0011870.1 mouse_genomes_project 2 38595976 38596582 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056263.1 MGP_C57BL6NJ_G0026431.1 mouse_genomes_project 2 91528265 91529201 - MGP_C57BL6NJ_P0056263 Olfr1128 protein_coding protein_coding MGP_C57BL6NJ_T0053630.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24139192 24143914 + MGP_C57BL6NJ_P0053630 Fbxw5 protein_coding protein_coding MGP_C57BL6NJ_T0053631.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24139258 24141993 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053632.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24139260 24142256 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053633.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24139301 24141629 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053634.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24139321 24142047 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053635.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24141000 24142027 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053636.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24141480 24142243 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0053637.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24141668 24143277 + MGP_C57BL6NJ_P0053637 Fbxw5 protein_coding protein_coding MGP_C57BL6NJ_T0053638.1 MGP_C57BL6NJ_G0025869.1 mouse_genomes_project 2 24142349 24143388 + Fbxw5 protein_coding processed_transcript MGP_C57BL6NJ_T0058303.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140251281 140308256 - MGP_C57BL6NJ_P0058303 Gpcpd1 protein_coding protein_coding MGP_C57BL6NJ_T0058304.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140251288 140264238 - Gpcpd1 protein_coding retained_intron MGP_C57BL6NJ_T0058305.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140251288 140308244 - MGP_C57BL6NJ_P0058305 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058306.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140251288 140308174 - MGP_C57BL6NJ_P0058306 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058307.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140251288 140308231 - MGP_C57BL6NJ_P0058307 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058308.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140256358 140260334 - MGP_C57BL6NJ_P0058308 Gpcpd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058309.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140273760 140308183 - MGP_C57BL6NJ_P0058309 Gpcpd1 protein_coding protein_coding MGP_C57BL6NJ_T0058310.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140281870 140317725 - MGP_C57BL6NJ_P0058310 Gpcpd1 protein_coding protein_coding MGP_C57BL6NJ_T0058311.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140281982 140308213 - Gpcpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0058312.1 MGP_C57BL6NJ_G0026964.1 mouse_genomes_project 2 140292527 140308242 - Gpcpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0060249.1 MGP_C57BL6NJ_G0027435.1 mouse_genomes_project 2 193202743 193210362 - MGP_C57BL6NJ_P0060249 Srms protein_coding protein_coding MGP_C57BL6NJ_T0058846.1 MGP_C57BL6NJ_G0027117.1 mouse_genomes_project 2 162567834 162632358 + MGP_C57BL6NJ_P0058846 Asxl1 protein_coding protein_coding MGP_C57BL6NJ_T0058847.1 MGP_C57BL6NJ_G0027117.1 mouse_genomes_project 2 162568323 162631299 + MGP_C57BL6NJ_P0058847 Asxl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058848.1 MGP_C57BL6NJ_G0027117.1 mouse_genomes_project 2 162569664 162579155 + Asxl1 protein_coding processed_transcript MGP_C57BL6NJ_T0058849.1 MGP_C57BL6NJ_G0027117.1 mouse_genomes_project 2 162569792 162618083 + Asxl1 protein_coding processed_transcript MGP_C57BL6NJ_T0058850.1 MGP_C57BL6NJ_G0027117.1 mouse_genomes_project 2 162619348 162625188 + Asxl1 protein_coding retained_intron MGP_C57BL6NJ_T0057959.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134984419 135004118 + MGP_C57BL6NJ_P0057959 Mrps5 protein_coding protein_coding MGP_C57BL6NJ_T0057960.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134984616 135001811 + Mrps5 protein_coding retained_intron MGP_C57BL6NJ_T0057961.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134984616 134993255 + Mrps5 protein_coding retained_intron MGP_C57BL6NJ_T0057962.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134987638 134992893 + MGP_C57BL6NJ_P0057962 Mrps5 protein_coding protein_coding MGP_C57BL6NJ_T0057963.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134992870 134995574 + Mrps5 protein_coding retained_intron MGP_C57BL6NJ_T0057964.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134997023 135001144 + Mrps5 protein_coding retained_intron MGP_C57BL6NJ_T0057965.1 MGP_C57BL6NJ_G0026885.1 mouse_genomes_project 2 134997230 134998443 + Mrps5 protein_coding retained_intron MGP_C57BL6NJ_T0102611.1 MGP_C57BL6NJ_G0040419.1 mouse_genomes_project 2 153007597 153016931 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102612.1 MGP_C57BL6NJ_G0040419.1 mouse_genomes_project 2 153013531 153051277 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102613.1 MGP_C57BL6NJ_G0040419.1 mouse_genomes_project 2 153013596 153015862 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102614.1 MGP_C57BL6NJ_G0040419.1 mouse_genomes_project 2 153014312 153015869 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0058535.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539929 154573478 + MGP_C57BL6NJ_P0058535 protein_coding protein_coding MGP_C57BL6NJ_T0058536.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539929 154656378 + MGP_C57BL6NJ_P0058536 protein_coding protein_coding MGP_C57BL6NJ_T0058537.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539950 154575475 + MGP_C57BL6NJ_P0058537 protein_coding protein_coding MGP_C57BL6NJ_T0058538.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539950 154572705 + MGP_C57BL6NJ_P0058538 protein_coding protein_coding MGP_C57BL6NJ_T0058539.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539953 154572560 + MGP_C57BL6NJ_P0058539 protein_coding protein_coding MGP_C57BL6NJ_T0058540.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539959 154831456 + MGP_C57BL6NJ_P0058540 protein_coding protein_coding MGP_C57BL6NJ_T0058541.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539961 154560498 + MGP_C57BL6NJ_P0058541 protein_coding protein_coding MGP_C57BL6NJ_T0058542.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154539963 154831212 + MGP_C57BL6NJ_P0058542 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058543.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154654798 154718332 + protein_coding processed_transcript MGP_C57BL6NJ_T0058544.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154658630 154752332 + protein_coding retained_intron MGP_C57BL6NJ_T0058545.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154658762 154752463 + MGP_C57BL6NJ_P0058545 protein_coding protein_coding MGP_C57BL6NJ_T0058546.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154661612 154831452 + protein_coding processed_transcript MGP_C57BL6NJ_T0058547.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154773744 154831377 + protein_coding processed_transcript MGP_C57BL6NJ_T0058548.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154830681 154831452 + protein_coding processed_transcript MGP_C57BL6NJ_T0058549.1 MGP_C57BL6NJ_G0027018.1 mouse_genomes_project 2 154831029 154831212 + MGP_C57BL6NJ_P0058549 protein_coding protein_coding MGP_C57BL6NJ_T0010690.1 MGP_C57BL6NJ_G0008775.1 mouse_genomes_project 2 137583463 137583580 - Mir6339 miRNA miRNA MGP_C57BL6NJ_T0056298.1 MGP_C57BL6NJ_G0026463.1 mouse_genomes_project 2 92149002 92149983 - MGP_C57BL6NJ_P0056298 Olfr1164 protein_coding protein_coding MGP_C57BL6NJ_T0101547.1 MGP_C57BL6NJ_G0039593.1 mouse_genomes_project 2 177781439 177781532 + Gm25878 snoRNA snoRNA MGP_C57BL6NJ_T0013939.1 MGP_C57BL6NJ_G0011984.1 mouse_genomes_project 2 81680822 81680990 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007556.1 MGP_C57BL6NJ_G0006196.1 mouse_genomes_project 2 176575246 176586285 - Platr29 lincRNA lincRNA MGP_C57BL6NJ_T0100228.1 MGP_C57BL6NJ_G0038274.1 mouse_genomes_project 2 167597847 167597946 + Gm23463 snRNA snRNA MGP_C57BL6NJ_T0057812.1 MGP_C57BL6NJ_G0026852.1 mouse_genomes_project 2 132925829 132977103 - MGP_C57BL6NJ_P0057812 Shc4 protein_coding protein_coding MGP_C57BL6NJ_T0057813.1 MGP_C57BL6NJ_G0026852.1 mouse_genomes_project 2 132925829 133027969 - MGP_C57BL6NJ_P0057813 Shc4 protein_coding protein_coding MGP_C57BL6NJ_T0057814.1 MGP_C57BL6NJ_G0026852.1 mouse_genomes_project 2 132927447 132976973 - MGP_C57BL6NJ_P0057814 Shc4 protein_coding protein_coding MGP_C57BL6NJ_T0057816.1 MGP_C57BL6NJ_G0026852.1 mouse_genomes_project 2 132995397 133028730 - Shc4 protein_coding retained_intron MGP_C57BL6NJ_T0056187.1 MGP_C57BL6NJ_G0026365.1 mouse_genomes_project 2 89444856 89445780 + MGP_C57BL6NJ_P0056187 Olfr1026 protein_coding protein_coding MGP_C57BL6NJ_T0001172.1 MGP_C57BL6NJ_G0001078.1 mouse_genomes_project 2 10880355 10882615 - TEC TEC MGP_C57BL6NJ_T0007551.1 MGP_C57BL6NJ_G0006191.1 mouse_genomes_project 2 172893159 172894234 + Gm14246 lincRNA lincRNA MGP_C57BL6NJ_T0018227.1 MGP_C57BL6NJ_G0015805.1 mouse_genomes_project 2 31406576 31423125 - Gm16534 processed_transcript processed_transcript MGP_C57BL6NJ_T0018228.1 MGP_C57BL6NJ_G0015805.1 mouse_genomes_project 2 31407371 31423872 - Gm16534 processed_transcript processed_transcript MGP_C57BL6NJ_T0056276.1 MGP_C57BL6NJ_G0026443.1 mouse_genomes_project 2 91737670 91738606 - MGP_C57BL6NJ_P0056276 Olfr1138 protein_coding protein_coding MGP_C57BL6NJ_T0054791.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34381986 34401121 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054792.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34382650 34404274 - MGP_C57BL6NJ_P0054792 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054793.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34382810 34401382 - MGP_C57BL6NJ_P0054793 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054794.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34382811 34404436 - MGP_C57BL6NJ_P0054794 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054795.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34382813 34404431 - MGP_C57BL6NJ_P0054795 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054796.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34382813 34404272 - MGP_C57BL6NJ_P0054796 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054797.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34383725 34404402 - MGP_C57BL6NJ_P0054797 Fbxw2 protein_coding protein_coding MGP_C57BL6NJ_T0054798.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34384750 34386134 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054799.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34389309 34404512 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054800.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34390208 34404368 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054801.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34392738 34404418 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054802.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34400049 34404408 - Fbxw2 protein_coding retained_intron MGP_C57BL6NJ_T0054803.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34400804 34404223 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0054804.1 MGP_C57BL6NJ_G0026060.1 mouse_genomes_project 2 34403463 34404416 - Fbxw2 protein_coding processed_transcript MGP_C57BL6NJ_T0101507.1 MGP_C57BL6NJ_G0039553.1 mouse_genomes_project 2 109817086 109817213 - Gm22501 snoRNA snoRNA MGP_C57BL6NJ_T0007353.1 MGP_C57BL6NJ_G0006029.1 mouse_genomes_project 2 34829550 34831270 + Gm13605 lincRNA lincRNA MGP_C57BL6NJ_T0001232.1 MGP_C57BL6NJ_G0001137.1 mouse_genomes_project 2 166493221 166496567 - TEC TEC MGP_C57BL6NJ_T0013764.1 MGP_C57BL6NJ_G0011809.1 mouse_genomes_project 2 16039614 16039879 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010562.1 MGP_C57BL6NJ_G0008647.1 mouse_genomes_project 2 8034843 8034962 + Mir669e miRNA miRNA MGP_C57BL6NJ_T0053750.1 MGP_C57BL6NJ_G0025898.1 mouse_genomes_project 2 24981870 24987668 - MGP_C57BL6NJ_P0053750 C030048H21Rik protein_coding protein_coding MGP_C57BL6NJ_T0007342.1 MGP_C57BL6NJ_G0006021.1 mouse_genomes_project 2 29852930 29865965 - Gm14486 lincRNA lincRNA MGP_C57BL6NJ_T0007343.1 MGP_C57BL6NJ_G0006021.1 mouse_genomes_project 2 29853075 29874068 - Gm14486 lincRNA lincRNA MGP_C57BL6NJ_T0102220.1 MGP_C57BL6NJ_G0040223.1 mouse_genomes_project 2 111229397 111229787 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0059953.1 MGP_C57BL6NJ_G0027362.1 mouse_genomes_project 2 183311750 183321040 - MGP_C57BL6NJ_P0059953 Cbln4 protein_coding protein_coding MGP_C57BL6NJ_T0099076.1 MGP_C57BL6NJ_G0037140.1 mouse_genomes_project 2 109887118 109887231 + Gm25554 rRNA rRNA MGP_C57BL6NJ_T0060364.1 MGP_C57BL6NJ_G0027452.1 mouse_genomes_project 2 193730822 193732627 - MGP_C57BL6NJ_P0060364 Sox18 protein_coding protein_coding MGP_C57BL6NJ_T0014074.1 MGP_C57BL6NJ_G0012119.1 mouse_genomes_project 2 129260259 129260605 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007592.1 MGP_C57BL6NJ_G0006226.1 mouse_genomes_project 2 182438792 182441241 + Gm14640 lincRNA lincRNA MGP_C57BL6NJ_T0057370.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568601 126577577 - MGP_C57BL6NJ_P0057370 Ltk protein_coding protein_coding MGP_C57BL6NJ_T0057371.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568603 126575803 - Ltk protein_coding retained_intron MGP_C57BL6NJ_T0057372.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568603 126577576 - MGP_C57BL6NJ_P0057372 Ltk protein_coding protein_coding MGP_C57BL6NJ_T0057373.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568607 126577713 - MGP_C57BL6NJ_P0057373 Ltk protein_coding protein_coding MGP_C57BL6NJ_T0057374.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568609 126575807 - MGP_C57BL6NJ_P0057374 Ltk protein_coding protein_coding MGP_C57BL6NJ_T0057375.1 MGP_C57BL6NJ_G0026772.1 mouse_genomes_project 2 126568611 126575801 - Ltk protein_coding retained_intron MGP_C57BL6NJ_T0057127.1 MGP_C57BL6NJ_G0026707.1 mouse_genomes_project 2 118509084 118510428 + MGP_C57BL6NJ_P0057127 Nop10 protein_coding protein_coding MGP_C57BL6NJ_T0055418.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63833518 63919160 - MGP_C57BL6NJ_P0055418 Dpp4 protein_coding protein_coding MGP_C57BL6NJ_T0055419.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63839454 63851522 - Dpp4 protein_coding retained_intron MGP_C57BL6NJ_T0055420.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63858532 63863985 - Dpp4 protein_coding processed_transcript MGP_C57BL6NJ_T0055421.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63870955 63884524 - Dpp4 protein_coding retained_intron MGP_C57BL6NJ_T0055422.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63880489 63918950 - Dpp4 protein_coding retained_intron MGP_C57BL6NJ_T0055423.1 MGP_C57BL6NJ_G0026187.1 mouse_genomes_project 2 63914630 63918788 - Dpp4 protein_coding processed_transcript MGP_C57BL6NJ_T0058795.1 MGP_C57BL6NJ_G0027105.1 mouse_genomes_project 2 162108808 162110119 - MGP_C57BL6NJ_P0058795 Foxs1 protein_coding protein_coding MGP_C57BL6NJ_T0007490.1 MGP_C57BL6NJ_G0006140.1 mouse_genomes_project 2 132567434 132568725 - Gm14003 lincRNA lincRNA MGP_C57BL6NJ_T0007341.1 MGP_C57BL6NJ_G0006020.1 mouse_genomes_project 2 29823915 29886319 + 9330198N18Rik lincRNA lincRNA MGP_C57BL6NJ_T0056323.1 MGP_C57BL6NJ_G0026486.1 mouse_genomes_project 2 92998414 92999425 - MGP_C57BL6NJ_P0056323 Olfr1200 protein_coding protein_coding MGP_C57BL6NJ_T0053477.1 MGP_C57BL6NJ_G0025841.1 mouse_genomes_project 2 23809317 23810762 - Stpg3 protein_coding processed_transcript MGP_C57BL6NJ_T0053478.1 MGP_C57BL6NJ_G0025841.1 mouse_genomes_project 2 23809318 23811742 - Stpg3 protein_coding processed_transcript MGP_C57BL6NJ_T0053479.1 MGP_C57BL6NJ_G0025841.1 mouse_genomes_project 2 23809669 23811741 - MGP_C57BL6NJ_P0053479 Stpg3 protein_coding protein_coding MGP_C57BL6NJ_T0053480.1 MGP_C57BL6NJ_G0025841.1 mouse_genomes_project 2 23809872 23811748 - MGP_C57BL6NJ_P0053480 Stpg3 protein_coding protein_coding MGP_C57BL6NJ_T0053481.1 MGP_C57BL6NJ_G0025841.1 mouse_genomes_project 2 23810028 23811702 - Stpg3 protein_coding processed_transcript MGP_C57BL6NJ_T0013794.1 MGP_C57BL6NJ_G0011839.1 mouse_genomes_project 2 25314065 25314634 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004139.1 MGP_C57BL6NJ_G0003681.1 mouse_genomes_project 2 67709534 67721278 - Gm13617 antisense antisense MGP_C57BL6NJ_T0010578.1 MGP_C57BL6NJ_G0008663.1 mouse_genomes_project 2 8061666 8061739 + Mir466 miRNA miRNA MGP_C57BL6NJ_T0057649.1 MGP_C57BL6NJ_G0026810.1 mouse_genomes_project 2 128326500 128343771 - MGP_C57BL6NJ_P0057649 Strc protein_coding protein_coding MGP_C57BL6NJ_T0057650.1 MGP_C57BL6NJ_G0026810.1 mouse_genomes_project 2 128331233 128337862 - MGP_C57BL6NJ_P0057650 Strc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057651.1 MGP_C57BL6NJ_G0026810.1 mouse_genomes_project 2 128335716 128337846 - Strc protein_coding processed_transcript MGP_C57BL6NJ_T0057652.1 MGP_C57BL6NJ_G0026810.1 mouse_genomes_project 2 128335795 128337620 - Strc protein_coding retained_intron MGP_C57BL6NJ_T0057653.1 MGP_C57BL6NJ_G0026810.1 mouse_genomes_project 2 128339174 128349999 - Strc protein_coding retained_intron MGP_C57BL6NJ_T0058225.1 MGP_C57BL6NJ_G0026949.1 mouse_genomes_project 2 138886814 138900720 + MGP_C57BL6NJ_P0058225 Mavs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058226.1 MGP_C57BL6NJ_G0026949.1 mouse_genomes_project 2 138886818 138900723 + MGP_C57BL6NJ_P0058226 Mavs protein_coding protein_coding MGP_C57BL6NJ_T0058227.1 MGP_C57BL6NJ_G0026949.1 mouse_genomes_project 2 138886856 138900723 + MGP_C57BL6NJ_P0058227 Mavs protein_coding protein_coding MGP_C57BL6NJ_T0058228.1 MGP_C57BL6NJ_G0026949.1 mouse_genomes_project 2 138894631 138898363 + Mavs protein_coding processed_transcript MGP_C57BL6NJ_T0058023.1 MGP_C57BL6NJ_G0026904.1 mouse_genomes_project 2 136618498 136641127 + MGP_C57BL6NJ_P0058023 Polr1b protein_coding protein_coding MGP_C57BL6NJ_T0058024.1 MGP_C57BL6NJ_G0026904.1 mouse_genomes_project 2 136618558 136648111 + MGP_C57BL6NJ_P0058024 Polr1b protein_coding protein_coding MGP_C57BL6NJ_T0058025.1 MGP_C57BL6NJ_G0026904.1 mouse_genomes_project 2 136636030 136638848 + Polr1b protein_coding processed_transcript MGP_C57BL6NJ_T0058026.1 MGP_C57BL6NJ_G0026904.1 mouse_genomes_project 2 136639012 136644648 + Polr1b protein_coding processed_transcript MGP_C57BL6NJ_T0058027.1 MGP_C57BL6NJ_G0026904.1 mouse_genomes_project 2 136642094 136645348 + Polr1b protein_coding processed_transcript MGP_C57BL6NJ_T0004340.1 MGP_C57BL6NJ_G0003824.1 mouse_genomes_project 2 192241428 192249304 + Gata5os antisense antisense MGP_C57BL6NJ_T0014163.1 MGP_C57BL6NJ_G0012208.1 mouse_genomes_project 2 165073264 165073555 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007453.1 MGP_C57BL6NJ_G0006110.1 mouse_genomes_project 2 109465035 109471972 + Gm13881 lincRNA lincRNA MGP_C57BL6NJ_T0059213.1 MGP_C57BL6NJ_G0027189.1 mouse_genomes_project 2 166164029 166185218 + MGP_C57BL6NJ_P0059213 Aar2 protein_coding protein_coding MGP_C57BL6NJ_T0059214.1 MGP_C57BL6NJ_G0027189.1 mouse_genomes_project 2 166164041 166186034 + MGP_C57BL6NJ_P0059214 Aar2 protein_coding protein_coding MGP_C57BL6NJ_T0059215.1 MGP_C57BL6NJ_G0027189.1 mouse_genomes_project 2 166164053 166167130 + Aar2 protein_coding processed_transcript MGP_C57BL6NJ_T0059216.1 MGP_C57BL6NJ_G0027189.1 mouse_genomes_project 2 166164055 166167511 + MGP_C57BL6NJ_P0059216 Aar2 protein_coding protein_coding MGP_C57BL6NJ_T0059217.1 MGP_C57BL6NJ_G0027189.1 mouse_genomes_project 2 166164069 166167264 + MGP_C57BL6NJ_P0059217 Aar2 protein_coding protein_coding MGP_C57BL6NJ_T0053697.1 MGP_C57BL6NJ_G0025890.1 mouse_genomes_project 2 24520278 24524532 - MGP_C57BL6NJ_P0053697 Sohlh1 protein_coding protein_coding MGP_C57BL6NJ_T0004336.1 MGP_C57BL6NJ_G0003822.1 mouse_genomes_project 2 185824523 185842593 - Nespas antisense antisense MGP_C57BL6NJ_T0004337.1 MGP_C57BL6NJ_G0003822.1 mouse_genomes_project 2 185825480 185842546 - Nespas antisense antisense MGP_C57BL6NJ_T0004338.1 MGP_C57BL6NJ_G0003822.1 mouse_genomes_project 2 185827639 185828722 - Nespas antisense antisense MGP_C57BL6NJ_T0004219.1 MGP_C57BL6NJ_G0003734.1 mouse_genomes_project 2 126891120 126893761 - Gm13999 antisense antisense MGP_C57BL6NJ_T0053747.1 MGP_C57BL6NJ_G0025896.1 mouse_genomes_project 2 24932901 24965238 - MGP_C57BL6NJ_P0053747 Qsox2 protein_coding protein_coding MGP_C57BL6NJ_T0053748.1 MGP_C57BL6NJ_G0025896.1 mouse_genomes_project 2 24932903 24965411 - MGP_C57BL6NJ_P0053748 Qsox2 protein_coding protein_coding MGP_C57BL6NJ_T0007510.1 MGP_C57BL6NJ_G0006157.1 mouse_genomes_project 2 145328445 145375145 + Gm14055 lincRNA lincRNA MGP_C57BL6NJ_T0056288.1 MGP_C57BL6NJ_G0026454.1 mouse_genomes_project 2 91971330 91972275 - MGP_C57BL6NJ_P0056288 Olfr1155 protein_coding protein_coding MGP_C57BL6NJ_T0053419.1 MGP_C57BL6NJ_G0025833.1 mouse_genomes_project 2 23546401 23547383 - MGP_C57BL6NJ_P0053419 Mrpl41 protein_coding protein_coding MGP_C57BL6NJ_T0053420.1 MGP_C57BL6NJ_G0025833.1 mouse_genomes_project 2 23546779 23547274 - MGP_C57BL6NJ_P0053420 Mrpl41 protein_coding protein_coding MGP_C57BL6NJ_T0059045.1 MGP_C57BL6NJ_G0027168.1 mouse_genomes_project 2 165374525 165376222 - MGP_C57BL6NJ_P0059045 BC029722 protein_coding protein_coding MGP_C57BL6NJ_T0053694.1 MGP_C57BL6NJ_G0025888.1 mouse_genomes_project 2 24476609 24493723 - MGP_C57BL6NJ_P0053694 Glt6d1 protein_coding protein_coding MGP_C57BL6NJ_T0053695.1 MGP_C57BL6NJ_G0025888.1 mouse_genomes_project 2 24477964 24493706 - Glt6d1 protein_coding processed_transcript MGP_C57BL6NJ_T0007607.1 MGP_C57BL6NJ_G0006240.1 mouse_genomes_project 2 192862494 192863610 + Gm27032 lincRNA lincRNA MGP_C57BL6NJ_T0013983.1 MGP_C57BL6NJ_G0012028.1 mouse_genomes_project 2 92753439 92763866 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059157.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165739363 165777823 - MGP_C57BL6NJ_P0059157 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059158.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165739370 165777165 - MGP_C57BL6NJ_P0059158 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059159.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165739373 165777734 - MGP_C57BL6NJ_P0059159 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059160.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165739373 165777752 - MGP_C57BL6NJ_P0059160 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059161.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165740064 165777769 - MGP_C57BL6NJ_P0059161 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059162.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165740064 165777761 - MGP_C57BL6NJ_P0059162 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059163.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165741360 165756964 - MGP_C57BL6NJ_P0059163 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059164.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165753931 165777727 - MGP_C57BL6NJ_P0059164 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059165.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165753933 165757253 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059166.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165754915 165762665 - Rbm39 protein_coding processed_transcript MGP_C57BL6NJ_T0059167.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165756026 165761582 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059168.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165756846 165777744 - MGP_C57BL6NJ_P0059168 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059169.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165756960 165770546 - Rbm39 protein_coding processed_transcript MGP_C57BL6NJ_T0059170.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165760971 165775316 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059171.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165763460 165774968 - Rbm39 protein_coding processed_transcript MGP_C57BL6NJ_T0059172.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165770417 165777746 - MGP_C57BL6NJ_P0059172 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059173.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165770516 165777732 - MGP_C57BL6NJ_P0059173 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059174.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165770538 165775486 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059175.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165772269 165777497 - MGP_C57BL6NJ_P0059175 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059176.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165772273 165777741 - MGP_C57BL6NJ_P0059176 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059177.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165772358 165777823 - MGP_C57BL6NJ_P0059177 Rbm39 protein_coding protein_coding MGP_C57BL6NJ_T0059178.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165774745 165777781 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059179.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165774945 165777734 - MGP_C57BL6NJ_P0059179 Rbm39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059180.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165776143 165777797 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0059181.1 MGP_C57BL6NJ_G0027184.1 mouse_genomes_project 2 165776145 165777730 - Rbm39 protein_coding retained_intron MGP_C57BL6NJ_T0004086.1 MGP_C57BL6NJ_G0003639.1 mouse_genomes_project 2 27523194 27536929 + Gm13381 antisense antisense MGP_C57BL6NJ_T0004087.1 MGP_C57BL6NJ_G0003639.1 mouse_genomes_project 2 27523456 27537211 + Gm13381 antisense antisense MGP_C57BL6NJ_T0010698.1 MGP_C57BL6NJ_G0008783.1 mouse_genomes_project 2 156819766 156819845 + Gm27420 miRNA miRNA MGP_C57BL6NJ_T0057947.1 MGP_C57BL6NJ_G0026882.1 mouse_genomes_project 2 134850293 134918095 - MGP_C57BL6NJ_P0057947 Kcnip3 protein_coding protein_coding MGP_C57BL6NJ_T0057948.1 MGP_C57BL6NJ_G0026882.1 mouse_genomes_project 2 134850293 134918095 - MGP_C57BL6NJ_P0057948 Kcnip3 protein_coding protein_coding MGP_C57BL6NJ_T0057949.1 MGP_C57BL6NJ_G0026882.1 mouse_genomes_project 2 134851925 134875911 - MGP_C57BL6NJ_P0057949 Kcnip3 protein_coding protein_coding MGP_C57BL6NJ_T0057950.1 MGP_C57BL6NJ_G0026882.1 mouse_genomes_project 2 134852035 134918819 - Kcnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0011759.1 MGP_C57BL6NJ_G0009844.1 mouse_genomes_project 2 45501903 45501980 + Gm27645 misc_RNA misc_RNA MGP_C57BL6NJ_T0010719.1 MGP_C57BL6NJ_G0008804.1 mouse_genomes_project 2 184254478 184254556 - Gm22773 miRNA miRNA MGP_C57BL6NJ_T0100204.1 MGP_C57BL6NJ_G0038250.1 mouse_genomes_project 2 108382856 108382963 + Gm23731 snRNA snRNA MGP_C57BL6NJ_T0004284.1 MGP_C57BL6NJ_G0003783.1 mouse_genomes_project 2 165128016 165129737 + Gssos2 antisense antisense MGP_C57BL6NJ_T0004285.1 MGP_C57BL6NJ_G0003783.1 mouse_genomes_project 2 165128766 165129723 + Gssos2 antisense antisense MGP_C57BL6NJ_T0101502.1 MGP_C57BL6NJ_G0039548.1 mouse_genomes_project 2 99432155 99432286 + Gm24318 snoRNA snoRNA MGP_C57BL6NJ_T0100212.1 MGP_C57BL6NJ_G0038258.1 mouse_genomes_project 2 129456391 129456543 - Gm24409 snRNA snRNA MGP_C57BL6NJ_T0052882.1 MGP_C57BL6NJ_G0025742.1 mouse_genomes_project 2 3107644 3165001 - MGP_C57BL6NJ_P0052882 Dhtkd1 protein_coding protein_coding MGP_C57BL6NJ_T0052883.1 MGP_C57BL6NJ_G0025742.1 mouse_genomes_project 2 3108707 3164952 - MGP_C57BL6NJ_P0052883 Dhtkd1 protein_coding protein_coding MGP_C57BL6NJ_T0052884.1 MGP_C57BL6NJ_G0025742.1 mouse_genomes_project 2 3115006 3125533 - Dhtkd1 protein_coding processed_transcript MGP_C57BL6NJ_T0055566.1 MGP_C57BL6NJ_G0026216.1 mouse_genomes_project 2 71276196 71388126 - MGP_C57BL6NJ_P0055566 Abcb11 protein_coding protein_coding MGP_C57BL6NJ_T0055567.1 MGP_C57BL6NJ_G0026216.1 mouse_genomes_project 2 71276203 71388128 - MGP_C57BL6NJ_P0055567 Abcb11 protein_coding protein_coding MGP_C57BL6NJ_T0055568.1 MGP_C57BL6NJ_G0026216.1 mouse_genomes_project 2 71276203 71388112 - MGP_C57BL6NJ_P0055568 Abcb11 protein_coding protein_coding MGP_C57BL6NJ_T0055569.1 MGP_C57BL6NJ_G0026216.1 mouse_genomes_project 2 71276224 71276993 - Abcb11 protein_coding processed_transcript MGP_C57BL6NJ_T0056284.1 MGP_C57BL6NJ_G0026450.1 mouse_genomes_project 2 91890951 91891878 + MGP_C57BL6NJ_P0056284 Olfr1151 protein_coding protein_coding MGP_C57BL6NJ_T0060156.1 MGP_C57BL6NJ_G0027418.1 mouse_genomes_project 2 192520923 192527515 + MGP_C57BL6NJ_P0060156 Ogfr protein_coding protein_coding MGP_C57BL6NJ_T0060157.1 MGP_C57BL6NJ_G0027418.1 mouse_genomes_project 2 192521140 192525528 + Ogfr protein_coding retained_intron MGP_C57BL6NJ_T0052855.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 2998533 3053615 - MGP_C57BL6NJ_P0052855 Cdc123 protein_coding protein_coding MGP_C57BL6NJ_T0052856.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 2998904 3002838 - Cdc123 protein_coding processed_transcript MGP_C57BL6NJ_T0052857.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3002600 3008612 - Cdc123 protein_coding retained_intron MGP_C57BL6NJ_T0052858.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3009069 3015000 - Cdc123 protein_coding processed_transcript MGP_C57BL6NJ_T0052859.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3009188 3041669 - Cdc123 protein_coding retained_intron MGP_C57BL6NJ_T0052860.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3013732 3042164 - MGP_C57BL6NJ_P0052860 Cdc123 protein_coding protein_coding MGP_C57BL6NJ_T0052861.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3014895 3053392 - Cdc123 protein_coding retained_intron MGP_C57BL6NJ_T0052862.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3025563 3027558 - Cdc123 protein_coding retained_intron MGP_C57BL6NJ_T0052863.1 MGP_C57BL6NJ_G0025738.1 mouse_genomes_project 2 3027254 3053302 - Cdc123 protein_coding processed_transcript MGP_C57BL6NJ_T0010555.1 MGP_C57BL6NJ_G0008640.1 mouse_genomes_project 2 28982 29089 + Gm27306 miRNA miRNA MGP_C57BL6NJ_T0056027.1 MGP_C57BL6NJ_G0026309.1 mouse_genomes_project 2 86142589 86215552 + MGP_C57BL6NJ_P0056027 Fsip2 protein_coding protein_coding MGP_C57BL6NJ_T0056028.1 MGP_C57BL6NJ_G0026309.1 mouse_genomes_project 2 86148455 86163663 + MGP_C57BL6NJ_P0056028 Fsip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056029.1 MGP_C57BL6NJ_G0026309.1 mouse_genomes_project 2 86185344 86215552 + MGP_C57BL6NJ_P0056029 Fsip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054039.1 MGP_C57BL6NJ_G0025949.1 mouse_genomes_project 2 27799616 27819416 - MGP_C57BL6NJ_P0054039 Gtf3c4 protein_coding protein_coding MGP_C57BL6NJ_T0054040.1 MGP_C57BL6NJ_G0025949.1 mouse_genomes_project 2 27799622 27819342 - MGP_C57BL6NJ_P0054040 Gtf3c4 protein_coding protein_coding MGP_C57BL6NJ_T0054041.1 MGP_C57BL6NJ_G0025949.1 mouse_genomes_project 2 27814259 27819342 - Gtf3c4 protein_coding processed_transcript MGP_C57BL6NJ_T0054042.1 MGP_C57BL6NJ_G0025949.1 mouse_genomes_project 2 27814359 27819408 - Gtf3c4 protein_coding processed_transcript MGP_C57BL6NJ_T0007313.1 MGP_C57BL6NJ_G0006000.1 mouse_genomes_project 2 9023590 9025616 + Gm13291 lincRNA lincRNA MGP_C57BL6NJ_T0004298.1 MGP_C57BL6NJ_G0003796.1 mouse_genomes_project 2 173697446 173698013 + 2900093K20Rik antisense antisense MGP_C57BL6NJ_T0055859.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78480674 78581451 + MGP_C57BL6NJ_P0055859 Agps protein_coding protein_coding MGP_C57BL6NJ_T0055860.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78480686 78545352 + MGP_C57BL6NJ_P0055860 Agps protein_coding protein_coding MGP_C57BL6NJ_T0055861.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78481002 78576179 + MGP_C57BL6NJ_P0055861 Agps protein_coding protein_coding MGP_C57BL6NJ_T0055862.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78517465 78526656 + MGP_C57BL6NJ_P0055862 Agps protein_coding protein_coding MGP_C57BL6NJ_T0055863.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78523023 78541937 + Agps protein_coding processed_transcript MGP_C57BL6NJ_T0055864.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78544252 78576249 + MGP_C57BL6NJ_P0055864 Agps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055865.1 MGP_C57BL6NJ_G0026277.1 mouse_genomes_project 2 78559297 78561796 + Agps protein_coding retained_intron MGP_C57BL6NJ_T0010723.1 MGP_C57BL6NJ_G0008808.1 mouse_genomes_project 2 185809008 185809090 - Mir298 miRNA miRNA MGP_C57BL6NJ_T0013751.1 MGP_C57BL6NJ_G0011796.1 mouse_genomes_project 2 12519774 12520109 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013804.1 MGP_C57BL6NJ_G0011849.1 mouse_genomes_project 2 31330849 31332255 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101521.1 MGP_C57BL6NJ_G0039567.1 mouse_genomes_project 2 137867421 137867507 + Gm23187 snoRNA snoRNA MGP_C57BL6NJ_T0103010.1 MGP_C57BL6NJ_G0040804.1 mouse_genomes_project 2 89067869 89068800 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013738.1 MGP_C57BL6NJ_G0011783.1 mouse_genomes_project 2 5528395 5529049 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056211.1 MGP_C57BL6NJ_G0026388.1 mouse_genomes_project 2 90039949 90040891 - MGP_C57BL6NJ_P0056211 Olfr1056 protein_coding protein_coding MGP_C57BL6NJ_T0101483.1 MGP_C57BL6NJ_G0039529.1 mouse_genomes_project 2 43020654 43020787 + Gm24350 snoRNA snoRNA MGP_C57BL6NJ_T0018377.1 MGP_C57BL6NJ_G0015883.1 mouse_genomes_project 2 176426034 176427385 + BC046401 processed_transcript processed_transcript MGP_C57BL6NJ_T0058197.1 MGP_C57BL6NJ_G0026942.1 mouse_genomes_project 2 138773880 138794901 + MGP_C57BL6NJ_P0058197 Hspa12b protein_coding protein_coding MGP_C57BL6NJ_T0058198.1 MGP_C57BL6NJ_G0026942.1 mouse_genomes_project 2 138774042 138783935 + MGP_C57BL6NJ_P0058198 Hspa12b protein_coding protein_coding MGP_C57BL6NJ_T0058199.1 MGP_C57BL6NJ_G0026942.1 mouse_genomes_project 2 138774094 138793807 + MGP_C57BL6NJ_P0058199 Hspa12b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056025.1 MGP_C57BL6NJ_G0026308.1 mouse_genomes_project 2 85346908 85377698 + Zfp804a protein_coding processed_transcript MGP_C57BL6NJ_T0056026.1 MGP_C57BL6NJ_G0026308.1 mouse_genomes_project 2 85347484 85380697 + MGP_C57BL6NJ_P0056026 Zfp804a protein_coding protein_coding MGP_C57BL6NJ_T0004325.1 MGP_C57BL6NJ_G0003815.1 mouse_genomes_project 2 181731926 181734308 + Gm14637 antisense antisense MGP_C57BL6NJ_T0060394.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193824271 193898961 + MGP_C57BL6NJ_P0060394 Myt1 protein_coding protein_coding MGP_C57BL6NJ_T0060395.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193824335 193895918 + MGP_C57BL6NJ_P0060395 Myt1 protein_coding protein_coding MGP_C57BL6NJ_T0060396.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193827968 193864614 + Myt1 protein_coding processed_transcript MGP_C57BL6NJ_T0060397.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193828242 193875018 + MGP_C57BL6NJ_P0060397 Myt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060398.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193848522 193885620 + MGP_C57BL6NJ_P0060398 Myt1 protein_coding protein_coding MGP_C57BL6NJ_T0060399.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193865028 193898896 + Myt1 protein_coding retained_intron MGP_C57BL6NJ_T0060400.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193866319 193876548 + Myt1 protein_coding processed_transcript MGP_C57BL6NJ_T0060401.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193881205 193890106 + MGP_C57BL6NJ_P0060401 Myt1 protein_coding protein_coding MGP_C57BL6NJ_T0060402.1 MGP_C57BL6NJ_G0027457.1 mouse_genomes_project 2 193889565 193892004 + Myt1 protein_coding retained_intron MGP_C57BL6NJ_T0053141.1 MGP_C57BL6NJ_G0025783.1 mouse_genomes_project 2 14290722 14706494 + MGP_C57BL6NJ_P0053141 Plxdc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053142.1 MGP_C57BL6NJ_G0025783.1 mouse_genomes_project 2 14291537 14706876 + MGP_C57BL6NJ_P0053142 Plxdc2 protein_coding protein_coding MGP_C57BL6NJ_T0053143.1 MGP_C57BL6NJ_G0025783.1 mouse_genomes_project 2 14291767 14707044 + MGP_C57BL6NJ_P0053143 Plxdc2 protein_coding protein_coding MGP_C57BL6NJ_T0053144.1 MGP_C57BL6NJ_G0025783.1 mouse_genomes_project 2 14581358 14706877 + Plxdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0056963.1 MGP_C57BL6NJ_G0026643.1 mouse_genomes_project 2 110402891 110465638 - MGP_C57BL6NJ_P0056963 Qser1 protein_coding protein_coding MGP_C57BL6NJ_T0004150.1 MGP_C57BL6NJ_G0003691.1 mouse_genomes_project 2 73795408 73806874 - Dlx1as antisense antisense MGP_C57BL6NJ_T0004151.1 MGP_C57BL6NJ_G0003691.1 mouse_genomes_project 2 73802986 73806882 - Dlx1as antisense antisense MGP_C57BL6NJ_T0004152.1 MGP_C57BL6NJ_G0003691.1 mouse_genomes_project 2 73806793 73816633 - Dlx1as antisense antisense MGP_C57BL6NJ_T0004153.1 MGP_C57BL6NJ_G0003691.1 mouse_genomes_project 2 73811714 73816714 - Dlx1as antisense antisense MGP_C57BL6NJ_T0057415.1 MGP_C57BL6NJ_G0026778.1 mouse_genomes_project 2 126893800 126909341 + MGP_C57BL6NJ_P0057415 Gm28042 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057417.1 MGP_C57BL6NJ_G0026778.1 mouse_genomes_project 2 126893811 126909341 + MGP_C57BL6NJ_P0057417 Gm28042 protein_coding protein_coding MGP_C57BL6NJ_T0057418.1 MGP_C57BL6NJ_G0026778.1 mouse_genomes_project 2 126893814 126907903 + MGP_C57BL6NJ_P0057418 Gm28042 protein_coding protein_coding MGP_C57BL6NJ_T0057422.1 MGP_C57BL6NJ_G0026778.1 mouse_genomes_project 2 126898155 126901301 + MGP_C57BL6NJ_P0057422 Gm28042 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101505.1 MGP_C57BL6NJ_G0039551.1 mouse_genomes_project 2 102190452 102190581 + Gm22313 snoRNA snoRNA MGP_C57BL6NJ_T0057939.1 MGP_C57BL6NJ_G0026880.1 mouse_genomes_project 2 134817231 134828125 + MGP_C57BL6NJ_P0057939 Gpat2 protein_coding protein_coding MGP_C57BL6NJ_T0018293.1 MGP_C57BL6NJ_G0015845.1 mouse_genomes_project 2 115667878 115668806 + Gm20638 processed_transcript processed_transcript MGP_C57BL6NJ_T0014117.1 MGP_C57BL6NJ_G0012162.1 mouse_genomes_project 2 151595715 151596516 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018271.1 MGP_C57BL6NJ_G0015835.1 mouse_genomes_project 2 95599649 95612133 - Gm13778 processed_transcript processed_transcript MGP_C57BL6NJ_T0018272.1 MGP_C57BL6NJ_G0015835.1 mouse_genomes_project 2 95599952 95612148 - Gm13778 processed_transcript processed_transcript MGP_C57BL6NJ_T0057323.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125957685 125959609 + Zfyve19 protein_coding processed_transcript MGP_C57BL6NJ_T0057324.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125958080 125959672 + Zfyve19 protein_coding processed_transcript MGP_C57BL6NJ_T0057325.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125958100 125960835 + Zfyve19 protein_coding processed_transcript MGP_C57BL6NJ_T0057326.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125958109 125960213 + Zfyve19 protein_coding retained_intron MGP_C57BL6NJ_T0057327.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125958198 125968692 + MGP_C57BL6NJ_P0057327 Zfyve19 protein_coding protein_coding MGP_C57BL6NJ_T0057328.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125959907 125966527 + Zfyve19 protein_coding retained_intron MGP_C57BL6NJ_T0057329.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125960531 125960789 + Zfyve19 protein_coding processed_transcript MGP_C57BL6NJ_T0057330.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125960710 125966549 + Zfyve19 protein_coding retained_intron MGP_C57BL6NJ_T0057331.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125966139 125968035 + Zfyve19 protein_coding retained_intron MGP_C57BL6NJ_T0057332.1 MGP_C57BL6NJ_G0026757.1 mouse_genomes_project 2 125967902 125968687 + Zfyve19 protein_coding retained_intron MGP_C57BL6NJ_T0058495.1 MGP_C57BL6NJ_G0027009.1 mouse_genomes_project 2 153096325 153104930 - MGP_C57BL6NJ_P0058495 Rbbp9 protein_coding protein_coding MGP_C57BL6NJ_T0058496.1 MGP_C57BL6NJ_G0027009.1 mouse_genomes_project 2 153097881 153104851 - Rbbp9 protein_coding processed_transcript MGP_C57BL6NJ_T0004114.1 MGP_C57BL6NJ_G0003662.1 mouse_genomes_project 2 38128983 38129943 - Gm27197 antisense antisense MGP_C57BL6NJ_T0004032.1 MGP_C57BL6NJ_G0003599.1 mouse_genomes_project 2 438183 444117 + Gm13184 antisense antisense MGP_C57BL6NJ_T0054265.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525377 29548386 + MGP_C57BL6NJ_P0054265 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054266.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525389 29529842 + Fam73b protein_coding processed_transcript MGP_C57BL6NJ_T0054267.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525398 29541923 + MGP_C57BL6NJ_P0054267 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054268.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525410 29530449 + Fam73b protein_coding retained_intron MGP_C57BL6NJ_T0054269.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525437 29531550 + MGP_C57BL6NJ_P0054269 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054270.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29525440 29548384 + MGP_C57BL6NJ_P0054270 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054271.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29528839 29530450 + Fam73b protein_coding retained_intron MGP_C57BL6NJ_T0054272.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29529559 29532347 + MGP_C57BL6NJ_P0054272 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054273.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29532426 29539512 + Fam73b protein_coding retained_intron MGP_C57BL6NJ_T0054274.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29541063 29544872 + Fam73b protein_coding retained_intron MGP_C57BL6NJ_T0054275.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29544577 29546965 + MGP_C57BL6NJ_P0054275 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0054276.1 MGP_C57BL6NJ_G0025985.1 mouse_genomes_project 2 29544808 29547071 + MGP_C57BL6NJ_P0054276 Fam73b protein_coding protein_coding MGP_C57BL6NJ_T0011748.1 MGP_C57BL6NJ_G0009833.1 mouse_genomes_project 2 5890771 5891062 - Gm24534 misc_RNA misc_RNA MGP_C57BL6NJ_T0004322.1 MGP_C57BL6NJ_G0003812.1 mouse_genomes_project 2 181485806 181513755 + Bcas1os2 antisense antisense MGP_C57BL6NJ_T0059054.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165411843 165497029 - Uqcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0059055.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165411843 165497029 - MGP_C57BL6NJ_P0059055 Uqcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059056.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165411845 165497012 - MGP_C57BL6NJ_P0059056 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059057.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165411845 165497005 - MGP_C57BL6NJ_P0059057 Uqcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059058.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165411870 165497279 - MGP_C57BL6NJ_P0059058 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059059.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165412896 165496987 - MGP_C57BL6NJ_P0059059 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059060.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165413133 165417706 - Uqcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0059061.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165413189 165497013 - MGP_C57BL6NJ_P0059061 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059062.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165413208 165497279 - MGP_C57BL6NJ_P0059062 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059063.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165413399 165497001 - MGP_C57BL6NJ_P0059063 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059064.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165416916 165497232 - Uqcc1 protein_coding retained_intron MGP_C57BL6NJ_T0059065.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165417380 165497012 - MGP_C57BL6NJ_P0059065 Uqcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059066.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165424942 165497019 - Uqcc1 protein_coding retained_intron MGP_C57BL6NJ_T0059067.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165437692 165497025 - Uqcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0059068.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165454035 165497029 - MGP_C57BL6NJ_P0059068 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0059069.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165454047 165478665 - Uqcc1 protein_coding retained_intron MGP_C57BL6NJ_T0059070.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165454054 165497245 - Uqcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0059071.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165476026 165497015 - Uqcc1 protein_coding retained_intron MGP_C57BL6NJ_T0059072.1 MGP_C57BL6NJ_G0027171.1 mouse_genomes_project 2 165477421 165497019 - MGP_C57BL6NJ_P0059072 Uqcc1 protein_coding protein_coding MGP_C57BL6NJ_T0014202.1 MGP_C57BL6NJ_G0012247.1 mouse_genomes_project 2 185568915 185569570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013785.1 MGP_C57BL6NJ_G0011830.1 mouse_genomes_project 2 22092121 22093025 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011781.1 MGP_C57BL6NJ_G0009866.1 mouse_genomes_project 2 166513509 166513755 + Gm27651 misc_RNA misc_RNA MGP_C57BL6NJ_T0054430.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30971215 30983457 + MGP_C57BL6NJ_P0054430 Exosc2 protein_coding protein_coding MGP_C57BL6NJ_T0054431.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30971219 30983172 + Exosc2 protein_coding retained_intron MGP_C57BL6NJ_T0054432.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30971234 30982711 + MGP_C57BL6NJ_P0054432 Exosc2 protein_coding protein_coding MGP_C57BL6NJ_T0054433.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30971243 30980577 + MGP_C57BL6NJ_P0054433 Exosc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054434.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30975372 30980650 + Exosc2 protein_coding processed_transcript MGP_C57BL6NJ_T0054435.1 MGP_C57BL6NJ_G0026007.1 mouse_genomes_project 2 30980400 30982704 + Exosc2 protein_coding retained_intron MGP_C57BL6NJ_T0053585.1 MGP_C57BL6NJ_G0025862.1 mouse_genomes_project 2 24058079 24059996 + MGP_C57BL6NJ_P0053585 Fut7 protein_coding protein_coding MGP_C57BL6NJ_T0053586.1 MGP_C57BL6NJ_G0025862.1 mouse_genomes_project 2 24058191 24061184 + MGP_C57BL6NJ_P0053586 Fut7 protein_coding protein_coding MGP_C57BL6NJ_T0053587.1 MGP_C57BL6NJ_G0025862.1 mouse_genomes_project 2 24058365 24061187 + MGP_C57BL6NJ_P0053587 Fut7 protein_coding protein_coding MGP_C57BL6NJ_T0053588.1 MGP_C57BL6NJ_G0025862.1 mouse_genomes_project 2 24058506 24061187 + MGP_C57BL6NJ_P0053588 Fut7 protein_coding protein_coding MGP_C57BL6NJ_T0053589.1 MGP_C57BL6NJ_G0025862.1 mouse_genomes_project 2 24059460 24059904 + Fut7 protein_coding processed_transcript MGP_C57BL6NJ_T0054592.1 MGP_C57BL6NJ_G0026029.1 mouse_genomes_project 2 31989315 31990816 - MGP_C57BL6NJ_P0054592 9430097D07Rik protein_coding protein_coding MGP_C57BL6NJ_T0014132.1 MGP_C57BL6NJ_G0012177.1 mouse_genomes_project 2 155985252 155985734 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004268.1 MGP_C57BL6NJ_G0003768.1 mouse_genomes_project 2 154875999 154883874 + A930019D19Rik antisense antisense MGP_C57BL6NJ_T0004239.1 MGP_C57BL6NJ_G0003749.1 mouse_genomes_project 2 139240334 139241900 + Gm14285 antisense antisense MGP_C57BL6NJ_T0056910.1 MGP_C57BL6NJ_G0026630.1 mouse_genomes_project 2 109523206 109582498 - 4931422A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056917.1 MGP_C57BL6NJ_G0026630.1 mouse_genomes_project 2 109549702 109583013 - MGP_C57BL6NJ_P0056917 4931422A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0056918.1 MGP_C57BL6NJ_G0026630.1 mouse_genomes_project 2 109580586 109583066 - 4931422A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0059586.1 MGP_C57BL6NJ_G0027280.1 mouse_genomes_project 2 174958652 174959790 + Wfdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0059587.1 MGP_C57BL6NJ_G0027280.1 mouse_genomes_project 2 174958818 174964750 + MGP_C57BL6NJ_P0059587 Wfdc2 protein_coding protein_coding MGP_C57BL6NJ_T0059588.1 MGP_C57BL6NJ_G0027280.1 mouse_genomes_project 2 174958938 174964750 + MGP_C57BL6NJ_P0059588 Wfdc2 protein_coding protein_coding MGP_C57BL6NJ_T0059589.1 MGP_C57BL6NJ_G0027280.1 mouse_genomes_project 2 174958953 174964750 + MGP_C57BL6NJ_P0059589 Wfdc2 protein_coding protein_coding MGP_C57BL6NJ_T0059590.1 MGP_C57BL6NJ_G0027280.1 mouse_genomes_project 2 174959258 174960419 + MGP_C57BL6NJ_P0059590 Wfdc2 protein_coding protein_coding MGP_C57BL6NJ_T0054251.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29505999 29520391 - MGP_C57BL6NJ_P0054251 Sh3glb2 protein_coding protein_coding MGP_C57BL6NJ_T0054252.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29505999 29520467 - MGP_C57BL6NJ_P0054252 Sh3glb2 protein_coding protein_coding MGP_C57BL6NJ_T0054253.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29506001 29520440 - MGP_C57BL6NJ_P0054253 Sh3glb2 protein_coding protein_coding MGP_C57BL6NJ_T0054254.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29506001 29520416 - MGP_C57BL6NJ_P0054254 Sh3glb2 protein_coding protein_coding MGP_C57BL6NJ_T0054255.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29506001 29520483 - MGP_C57BL6NJ_P0054255 Sh3glb2 protein_coding protein_coding MGP_C57BL6NJ_T0054256.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29506325 29520456 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0054257.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29506331 29507292 - Sh3glb2 protein_coding processed_transcript MGP_C57BL6NJ_T0054258.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29507010 29520488 - Sh3glb2 protein_coding processed_transcript MGP_C57BL6NJ_T0054259.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29507076 29508847 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0054260.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29507298 29508778 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0054261.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29509258 29516516 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0054262.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29509280 29516031 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0054263.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29510673 29520396 - Sh3glb2 protein_coding processed_transcript MGP_C57BL6NJ_T0054264.1 MGP_C57BL6NJ_G0025984.1 mouse_genomes_project 2 29510930 29520411 - Sh3glb2 protein_coding retained_intron MGP_C57BL6NJ_T0101464.1 MGP_C57BL6NJ_G0039510.1 mouse_genomes_project 2 17912257 17912389 + Gm24670 snoRNA snoRNA MGP_C57BL6NJ_T0056219.1 MGP_C57BL6NJ_G0026395.1 mouse_genomes_project 2 90392058 90393001 - MGP_C57BL6NJ_P0056219 protein_coding protein_coding MGP_C57BL6NJ_T0014070.1 MGP_C57BL6NJ_G0012115.1 mouse_genomes_project 2 128369467 128369700 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057216.1 MGP_C57BL6NJ_G0026730.1 mouse_genomes_project 2 123828753 123839232 + Fam98b protein_coding retained_intron MGP_C57BL6NJ_T0057217.1 MGP_C57BL6NJ_G0026730.1 mouse_genomes_project 2 123828753 123851680 + MGP_C57BL6NJ_P0057217 Fam98b protein_coding protein_coding MGP_C57BL6NJ_T0057218.1 MGP_C57BL6NJ_G0026730.1 mouse_genomes_project 2 123837770 123839230 + Fam98b protein_coding processed_transcript MGP_C57BL6NJ_T0103028.1 MGP_C57BL6NJ_G0040822.1 mouse_genomes_project 2 91810480 91810793 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014022.1 MGP_C57BL6NJ_G0012067.1 mouse_genomes_project 2 109360535 109361009 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007443.1 MGP_C57BL6NJ_G0006103.1 mouse_genomes_project 2 101919629 102030556 - 4930445B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0010627.1 MGP_C57BL6NJ_G0008712.1 mouse_genomes_project 2 30904095 30904159 + Mir6998 miRNA miRNA MGP_C57BL6NJ_T0059244.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166572932 166728454 - MGP_C57BL6NJ_P0059244 Ndrg3 protein_coding protein_coding MGP_C57BL6NJ_T0059245.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166572932 166728441 - MGP_C57BL6NJ_P0059245 Ndrg3 protein_coding protein_coding MGP_C57BL6NJ_T0059246.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166573990 166622852 - Ndrg3 protein_coding processed_transcript MGP_C57BL6NJ_T0059247.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166585433 166681283 - Ndrg3 protein_coding processed_transcript MGP_C57BL6NJ_T0059248.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166676131 166728398 - Ndrg3 protein_coding processed_transcript MGP_C57BL6NJ_T0059249.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166676150 166728325 - Ndrg3 protein_coding processed_transcript MGP_C57BL6NJ_T0059250.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166684232 166728445 - Ndrg3 protein_coding retained_intron MGP_C57BL6NJ_T0059251.1 MGP_C57BL6NJ_G0027196.1 mouse_genomes_project 2 166701394 166728394 - Ndrg3 protein_coding processed_transcript MGP_C57BL6NJ_T0057346.1 MGP_C57BL6NJ_G0026763.1 mouse_genomes_project 2 126123208 126126361 + MGP_C57BL6NJ_P0057346 Chac1 protein_coding protein_coding MGP_C57BL6NJ_T0007400.1 MGP_C57BL6NJ_G0006068.1 mouse_genomes_project 2 76405263 76413025 + Gm10822 lincRNA lincRNA MGP_C57BL6NJ_T0013987.1 MGP_C57BL6NJ_G0012032.1 mouse_genomes_project 2 95586461 95586806 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007499.1 MGP_C57BL6NJ_G0006147.1 mouse_genomes_project 2 140148390 140174760 + 4921508D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0056966.1 MGP_C57BL6NJ_G0026645.1 mouse_genomes_project 2 110519832 110612561 + MGP_C57BL6NJ_P0056966 Ccdc73 protein_coding protein_coding MGP_C57BL6NJ_T0056967.1 MGP_C57BL6NJ_G0026645.1 mouse_genomes_project 2 110541373 110667130 + MGP_C57BL6NJ_P0056967 Ccdc73 protein_coding protein_coding MGP_C57BL6NJ_T0056968.1 MGP_C57BL6NJ_G0026645.1 mouse_genomes_project 2 110566027 110656267 + MGP_C57BL6NJ_P0056968 Ccdc73 protein_coding protein_coding MGP_C57BL6NJ_T0056969.1 MGP_C57BL6NJ_G0026645.1 mouse_genomes_project 2 110658433 110685239 + MGP_C57BL6NJ_P0056969 Ccdc73 protein_coding protein_coding MGP_C57BL6NJ_T0056974.1 MGP_C57BL6NJ_G0026645.1 mouse_genomes_project 2 110684508 110685292 + Ccdc73 protein_coding processed_transcript MGP_C57BL6NJ_T0054918.1 MGP_C57BL6NJ_G0026081.1 mouse_genomes_project 2 35893759 35918413 + MGP_C57BL6NJ_P0054918 Ptgs1 protein_coding protein_coding MGP_C57BL6NJ_T0054919.1 MGP_C57BL6NJ_G0026081.1 mouse_genomes_project 2 35893889 35904202 + Ptgs1 protein_coding processed_transcript MGP_C57BL6NJ_T0054920.1 MGP_C57BL6NJ_G0026081.1 mouse_genomes_project 2 35902387 35918410 + Ptgs1 protein_coding processed_transcript MGP_C57BL6NJ_T0054921.1 MGP_C57BL6NJ_G0026081.1 mouse_genomes_project 2 35906851 35907607 + Ptgs1 protein_coding retained_intron MGP_C57BL6NJ_T0054922.1 MGP_C57BL6NJ_G0026081.1 mouse_genomes_project 2 35908613 35911344 + Ptgs1 protein_coding retained_intron MGP_C57BL6NJ_T0058747.1 MGP_C57BL6NJ_G0027081.1 mouse_genomes_project 2 161489785 161497651 - MGP_C57BL6NJ_P0058747 Nrsn2 protein_coding protein_coding MGP_C57BL6NJ_T0018242.1 MGP_C57BL6NJ_G0015814.1 mouse_genomes_project 2 58484531 58486813 - A930012O16Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018243.1 MGP_C57BL6NJ_G0015814.1 mouse_genomes_project 2 58484531 58486813 - A930012O16Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0055016.1 MGP_C57BL6NJ_G0026121.1 mouse_genomes_project 2 38385814 38441538 - MGP_C57BL6NJ_P0055016 Psmb7 protein_coding protein_coding MGP_C57BL6NJ_T0055017.1 MGP_C57BL6NJ_G0026121.1 mouse_genomes_project 2 38408948 38441371 - Psmb7 protein_coding retained_intron MGP_C57BL6NJ_T0099365.1 MGP_C57BL6NJ_G0037423.1 mouse_genomes_project 2 1160046 1163690 + Gm37814 sense_intronic sense_intronic MGP_C57BL6NJ_T0004120.1 MGP_C57BL6NJ_G0003667.1 mouse_genomes_project 2 44366353 44372518 - Arhgap15os antisense antisense MGP_C57BL6NJ_T0058672.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529097 160550727 + MGP_C57BL6NJ_P0058672 Nsfl1c protein_coding protein_coding MGP_C57BL6NJ_T0058673.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529104 160546466 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0058674.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529205 160540598 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0058675.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529208 160550722 + MGP_C57BL6NJ_P0058675 Nsfl1c protein_coding protein_coding MGP_C57BL6NJ_T0058676.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529219 160550831 + MGP_C57BL6NJ_P0058676 Nsfl1c protein_coding protein_coding MGP_C57BL6NJ_T0058677.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160529226 160542784 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0058678.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160541687 160548863 + Nsfl1c protein_coding processed_transcript MGP_C57BL6NJ_T0058679.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160542340 160550395 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0058680.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160543097 160548893 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0058681.1 MGP_C57BL6NJ_G0027063.1 mouse_genomes_project 2 160548300 160550668 + Nsfl1c protein_coding retained_intron MGP_C57BL6NJ_T0004201.1 MGP_C57BL6NJ_G0003721.1 mouse_genomes_project 2 116049750 116070286 - Ccdc34os antisense antisense MGP_C57BL6NJ_T0004202.1 MGP_C57BL6NJ_G0003721.1 mouse_genomes_project 2 116049751 116070289 - Ccdc34os antisense antisense MGP_C57BL6NJ_T0004249.1 MGP_C57BL6NJ_G0003754.1 mouse_genomes_project 2 140458958 140462850 - Gm14097 antisense antisense MGP_C57BL6NJ_T0055085.1 MGP_C57BL6NJ_G0026133.1 mouse_genomes_project 2 44036786 44718081 + MGP_C57BL6NJ_P0055085 Arhgap15 protein_coding protein_coding MGP_C57BL6NJ_T0055086.1 MGP_C57BL6NJ_G0026133.1 mouse_genomes_project 2 44036796 44709192 + MGP_C57BL6NJ_P0055086 Arhgap15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055087.1 MGP_C57BL6NJ_G0026133.1 mouse_genomes_project 2 44036831 44186513 + Arhgap15 protein_coding processed_transcript MGP_C57BL6NJ_T0055088.1 MGP_C57BL6NJ_G0026133.1 mouse_genomes_project 2 44036832 44709196 + MGP_C57BL6NJ_P0055088 Arhgap15 protein_coding protein_coding MGP_C57BL6NJ_T0055089.1 MGP_C57BL6NJ_G0026133.1 mouse_genomes_project 2 44372234 44455647 + Arhgap15 protein_coding processed_transcript MGP_C57BL6NJ_T0014157.1 MGP_C57BL6NJ_G0012202.1 mouse_genomes_project 2 164140647 164140868 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054613.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32041170 32054514 + MGP_C57BL6NJ_P0054613 Ak1 protein_coding protein_coding MGP_C57BL6NJ_T0054614.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32044849 32054510 + MGP_C57BL6NJ_P0054614 Ak1 protein_coding protein_coding MGP_C57BL6NJ_T0054615.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32044850 32050609 + MGP_C57BL6NJ_P0054615 Ak1 protein_coding protein_coding MGP_C57BL6NJ_T0054616.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32047804 32050572 + MGP_C57BL6NJ_P0054616 Ak1 protein_coding protein_coding MGP_C57BL6NJ_T0054617.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32048918 32054508 + MGP_C57BL6NJ_P0054617 Ak1 protein_coding protein_coding MGP_C57BL6NJ_T0054618.1 MGP_C57BL6NJ_G0026033.1 mouse_genomes_project 2 32048935 32052856 + Ak1 protein_coding retained_intron MGP_C57BL6NJ_T0055297.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60442067 60645304 + MGP_C57BL6NJ_P0055297 Pkp4 protein_coding protein_coding MGP_C57BL6NJ_T0055298.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60442067 60645303 + MGP_C57BL6NJ_P0055298 Pkp4 protein_coding protein_coding MGP_C57BL6NJ_T0055299.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60443444 60626363 + MGP_C57BL6NJ_P0055299 Pkp4 protein_coding protein_coding MGP_C57BL6NJ_T0055300.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60443444 60644923 + MGP_C57BL6NJ_P0055300 Pkp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055301.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60443444 60626366 + MGP_C57BL6NJ_P0055301 Pkp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055302.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60443444 60645307 + MGP_C57BL6NJ_P0055302 Pkp4 protein_coding protein_coding MGP_C57BL6NJ_T0055303.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60444263 60497324 + Pkp4 protein_coding processed_transcript MGP_C57BL6NJ_T0055304.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60444263 60593068 + MGP_C57BL6NJ_P0055304 Pkp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055305.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60483082 60497339 + Pkp4 protein_coding processed_transcript MGP_C57BL6NJ_T0055306.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60496975 60645306 + MGP_C57BL6NJ_P0055306 Pkp4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055307.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60512041 60645304 + MGP_C57BL6NJ_P0055307 Pkp4 protein_coding protein_coding MGP_C57BL6NJ_T0055308.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60553823 60595939 + Pkp4 protein_coding processed_transcript MGP_C57BL6NJ_T0055309.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60610314 60645304 + Pkp4 protein_coding processed_transcript MGP_C57BL6NJ_T0055310.1 MGP_C57BL6NJ_G0026172.1 mouse_genomes_project 2 60629686 60635746 + Pkp4 protein_coding processed_transcript MGP_C57BL6NJ_T0100206.1 MGP_C57BL6NJ_G0038252.1 mouse_genomes_project 2 119582216 119582382 + Gm26505 snRNA snRNA MGP_C57BL6NJ_T0057515.1 MGP_C57BL6NJ_G0026792.1 mouse_genomes_project 2 127505169 127515664 + MGP_C57BL6NJ_P0057515 Haus2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057516.1 MGP_C57BL6NJ_G0026792.1 mouse_genomes_project 2 127505169 127517318 + MGP_C57BL6NJ_P0057516 Haus2 protein_coding protein_coding MGP_C57BL6NJ_T0057517.1 MGP_C57BL6NJ_G0026792.1 mouse_genomes_project 2 127505381 127517318 + MGP_C57BL6NJ_P0057517 Haus2 protein_coding protein_coding MGP_C57BL6NJ_T0060061.1 MGP_C57BL6NJ_G0027395.1 mouse_genomes_project 2 186337995 186361353 + MGP_C57BL6NJ_P0060061 Edn3 protein_coding protein_coding MGP_C57BL6NJ_T0060062.1 MGP_C57BL6NJ_G0027395.1 mouse_genomes_project 2 186338175 186359291 + MGP_C57BL6NJ_P0060062 Edn3 protein_coding protein_coding MGP_C57BL6NJ_T0060063.1 MGP_C57BL6NJ_G0027395.1 mouse_genomes_project 2 186338428 186359896 + Edn3 protein_coding retained_intron MGP_C57BL6NJ_T0060064.1 MGP_C57BL6NJ_G0027395.1 mouse_genomes_project 2 186347298 186359851 + Edn3 protein_coding processed_transcript MGP_C57BL6NJ_T0101469.1 MGP_C57BL6NJ_G0039515.1 mouse_genomes_project 2 25408730 25408857 - Snora43 snoRNA snoRNA MGP_C57BL6NJ_T0014076.1 MGP_C57BL6NJ_G0012121.1 mouse_genomes_project 2 129583966 129584558 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055525.1 MGP_C57BL6NJ_G0026207.1 mouse_genomes_project 2 69316097 69412141 + MGP_C57BL6NJ_P0055525 Xirp2 protein_coding protein_coding MGP_C57BL6NJ_T0055526.1 MGP_C57BL6NJ_G0026207.1 mouse_genomes_project 2 69316097 69412149 + MGP_C57BL6NJ_P0055526 Xirp2 protein_coding protein_coding MGP_C57BL6NJ_T0056223.1 MGP_C57BL6NJ_G0026399.1 mouse_genomes_project 2 90602645 90603587 - MGP_C57BL6NJ_P0056223 Olfr1090 protein_coding protein_coding MGP_C57BL6NJ_T0014013.1 MGP_C57BL6NJ_G0012058.1 mouse_genomes_project 2 105760998 105763925 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007314.1 MGP_C57BL6NJ_G0006001.1 mouse_genomes_project 2 10416995 10426531 + Gm37565 lincRNA lincRNA MGP_C57BL6NJ_T0054499.1 MGP_C57BL6NJ_G0026018.1 mouse_genomes_project 2 31627868 31633662 - MGP_C57BL6NJ_P0054499 Uck1 protein_coding protein_coding MGP_C57BL6NJ_T0054500.1 MGP_C57BL6NJ_G0026018.1 mouse_genomes_project 2 31628147 31630172 - Uck1 protein_coding retained_intron MGP_C57BL6NJ_T0054501.1 MGP_C57BL6NJ_G0026018.1 mouse_genomes_project 2 31629771 31633147 - MGP_C57BL6NJ_P0054501 Uck1 protein_coding protein_coding MGP_C57BL6NJ_T0054502.1 MGP_C57BL6NJ_G0026018.1 mouse_genomes_project 2 31631349 31633136 - Uck1 protein_coding retained_intron MGP_C57BL6NJ_T0054503.1 MGP_C57BL6NJ_G0026018.1 mouse_genomes_project 2 31631598 31633564 - Uck1 protein_coding retained_intron MGP_C57BL6NJ_T0055198.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52896484 52954994 + MGP_C57BL6NJ_P0055198 Rif1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055199.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52896491 52954247 + MGP_C57BL6NJ_P0055199 Rif1 protein_coding protein_coding MGP_C57BL6NJ_T0055200.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52896496 52954249 + MGP_C57BL6NJ_P0055200 Rif1 protein_coding protein_coding MGP_C57BL6NJ_T0055201.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52896726 52899859 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0055202.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52913215 52937224 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0055203.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52916837 52922087 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0055204.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52941524 52953922 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0055205.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52942001 52953975 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0055206.1 MGP_C57BL6NJ_G0026149.1 mouse_genomes_project 2 52942673 52954247 + Rif1 protein_coding processed_transcript MGP_C57BL6NJ_T0013967.1 MGP_C57BL6NJ_G0012012.1 mouse_genomes_project 2 91081686 91083162 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059784.1 MGP_C57BL6NJ_G0027325.1 mouse_genomes_project 2 177481052 177482910 + MGP_C57BL6NJ_P0059784 protein_coding protein_coding MGP_C57BL6NJ_T0059785.1 MGP_C57BL6NJ_G0027325.1 mouse_genomes_project 2 177482288 177490990 + MGP_C57BL6NJ_P0059785 protein_coding protein_coding MGP_C57BL6NJ_T0007591.1 MGP_C57BL6NJ_G0006225.1 mouse_genomes_project 2 182416192 182491078 + Gm14266 lincRNA lincRNA MGP_C57BL6NJ_T0007594.1 MGP_C57BL6NJ_G0006225.1 mouse_genomes_project 2 182475165 182493228 + Gm14266 lincRNA lincRNA MGP_C57BL6NJ_T0054036.1 MGP_C57BL6NJ_G0025948.1 mouse_genomes_project 2 27671690 27789320 + MGP_C57BL6NJ_P0054036 Ak8 protein_coding protein_coding MGP_C57BL6NJ_T0054037.1 MGP_C57BL6NJ_G0025948.1 mouse_genomes_project 2 27671733 27706489 + Ak8 protein_coding processed_transcript MGP_C57BL6NJ_T0054038.1 MGP_C57BL6NJ_G0025948.1 mouse_genomes_project 2 27714325 27732209 + Ak8 protein_coding processed_transcript MGP_C57BL6NJ_T0004252.1 MGP_C57BL6NJ_G0003757.1 mouse_genomes_project 2 143253283 143531279 - 9630028H03Rik antisense antisense MGP_C57BL6NJ_T0004253.1 MGP_C57BL6NJ_G0003757.1 mouse_genomes_project 2 143528224 143530991 - 9630028H03Rik antisense antisense MGP_C57BL6NJ_T0103016.1 MGP_C57BL6NJ_G0040810.1 mouse_genomes_project 2 89652860 89653786 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101540.1 MGP_C57BL6NJ_G0039586.1 mouse_genomes_project 2 168327137 168327270 + Gm25187 snoRNA snoRNA MGP_C57BL6NJ_T0055755.1 MGP_C57BL6NJ_G0026251.1 mouse_genomes_project 2 75395887 75414290 - MGP_C57BL6NJ_P0055755 Gm11084 protein_coding protein_coding MGP_C57BL6NJ_T0056763.1 MGP_C57BL6NJ_G0026603.1 mouse_genomes_project 2 98730227 98768550 - MGP_C57BL6NJ_P0056763 Gm27027 protein_coding protein_coding MGP_C57BL6NJ_T0058389.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144900064 145086331 + MGP_C57BL6NJ_P0058389 Slx4ip protein_coding protein_coding MGP_C57BL6NJ_T0058390.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144900347 145020201 + MGP_C57BL6NJ_P0058390 Slx4ip protein_coding protein_coding MGP_C57BL6NJ_T0058391.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144900454 145090127 + Slx4ip protein_coding processed_transcript MGP_C57BL6NJ_T0058392.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144901014 145084952 + Slx4ip protein_coding processed_transcript MGP_C57BL6NJ_T0058393.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144901014 145090127 + MGP_C57BL6NJ_P0058393 Slx4ip protein_coding protein_coding MGP_C57BL6NJ_T0058394.1 MGP_C57BL6NJ_G0026982.1 mouse_genomes_project 2 144918609 145086460 + MGP_C57BL6NJ_P0058394 Slx4ip protein_coding protein_coding MGP_C57BL6NJ_T0001188.1 MGP_C57BL6NJ_G0001094.1 mouse_genomes_project 2 21877039 21878557 + TEC TEC MGP_C57BL6NJ_T0058445.1 MGP_C57BL6NJ_G0026996.1 mouse_genomes_project 2 151518356 151521597 + MGP_C57BL6NJ_P0058445 Otor protein_coding protein_coding MGP_C57BL6NJ_T0058437.1 MGP_C57BL6NJ_G0026994.1 mouse_genomes_project 2 151020260 151328883 - MGP_C57BL6NJ_P0058437 Kif16b protein_coding protein_coding MGP_C57BL6NJ_T0058438.1 MGP_C57BL6NJ_G0026994.1 mouse_genomes_project 2 151021497 151051535 - Kif16b protein_coding retained_intron MGP_C57BL6NJ_T0058439.1 MGP_C57BL6NJ_G0026994.1 mouse_genomes_project 2 151022544 151328723 - MGP_C57BL6NJ_P0058439 Kif16b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0014185.1 MGP_C57BL6NJ_G0012230.1 mouse_genomes_project 2 173133424 173134114 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055285.1 MGP_C57BL6NJ_G0026168.1 mouse_genomes_project 2 59765929 59766891 + MGP_C57BL6NJ_P0055285 Gm17409 protein_coding protein_coding MGP_C57BL6NJ_T0056292.1 MGP_C57BL6NJ_G0026458.1 mouse_genomes_project 2 92041610 92042348 - MGP_C57BL6NJ_P0056292 Olfr1160 protein_coding protein_coding MGP_C57BL6NJ_T0014043.1 MGP_C57BL6NJ_G0012088.1 mouse_genomes_project 2 115442140 115442626 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013938.1 MGP_C57BL6NJ_G0011983.1 mouse_genomes_project 2 81480370 81480868 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053514.1 MGP_C57BL6NJ_G0025851.1 mouse_genomes_project 2 23873909 23875281 - Ssna1 protein_coding processed_transcript MGP_C57BL6NJ_T0053515.1 MGP_C57BL6NJ_G0025851.1 mouse_genomes_project 2 23873909 23875287 - MGP_C57BL6NJ_P0053515 Ssna1 protein_coding protein_coding MGP_C57BL6NJ_T0053516.1 MGP_C57BL6NJ_G0025851.1 mouse_genomes_project 2 23873956 23875309 - Ssna1 protein_coding processed_transcript MGP_C57BL6NJ_T0053517.1 MGP_C57BL6NJ_G0025851.1 mouse_genomes_project 2 23874576 23875275 - Ssna1 protein_coding processed_transcript MGP_C57BL6NJ_T0014101.1 MGP_C57BL6NJ_G0012146.1 mouse_genomes_project 2 140848089 140848455 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013958.1 MGP_C57BL6NJ_G0012003.1 mouse_genomes_project 2 86760000 86760141 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057686.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128540122 128595748 - MGP_C57BL6NJ_P0057686 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057687.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128540128 128585350 - MGP_C57BL6NJ_P0057687 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057688.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128540128 128829421 - MGP_C57BL6NJ_P0057688 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057689.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128540128 128779152 - MGP_C57BL6NJ_P0057689 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057690.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128542344 128550182 - MGP_C57BL6NJ_P0057690 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057691.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128542903 128779152 - MGP_C57BL6NJ_P0057691 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057692.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128542905 128829357 - MGP_C57BL6NJ_P0057692 Frmd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057693.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128542906 128829326 - MGP_C57BL6NJ_P0057693 Frmd5 protein_coding protein_coding MGP_C57BL6NJ_T0057694.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128543647 128553140 - Frmd5 protein_coding processed_transcript MGP_C57BL6NJ_T0057695.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128555978 128829391 - Frmd5 protein_coding retained_intron MGP_C57BL6NJ_T0057696.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128563522 128829206 - MGP_C57BL6NJ_P0057696 Frmd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057697.1 MGP_C57BL6NJ_G0026820.1 mouse_genomes_project 2 128563574 128582929 - Frmd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055266.1 MGP_C57BL6NJ_G0026162.1 mouse_genomes_project 2 59283119 59328973 + MGP_C57BL6NJ_P0055266 Galnt5 protein_coding protein_coding MGP_C57BL6NJ_T0055267.1 MGP_C57BL6NJ_G0026162.1 mouse_genomes_project 2 59283119 59322960 + MGP_C57BL6NJ_P0055267 Galnt5 protein_coding protein_coding MGP_C57BL6NJ_T0001200.1 MGP_C57BL6NJ_G0001106.1 mouse_genomes_project 2 35914847 35916871 - TEC TEC MGP_C57BL6NJ_T0053811.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25143818 25182762 - MGP_C57BL6NJ_P0053811 Sec16a protein_coding protein_coding MGP_C57BL6NJ_T0053812.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25143818 25165009 - MGP_C57BL6NJ_P0053812 Sec16a protein_coding protein_coding MGP_C57BL6NJ_T0053813.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25143820 25182764 - MGP_C57BL6NJ_P0053813 Sec16a protein_coding protein_coding MGP_C57BL6NJ_T0053814.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25144676 25147441 - Sec16a protein_coding processed_transcript MGP_C57BL6NJ_T0053815.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25145106 25150619 - Sec16a protein_coding processed_transcript MGP_C57BL6NJ_T0053816.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25148767 25154145 - Sec16a protein_coding processed_transcript MGP_C57BL6NJ_T0053817.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25171471 25177303 - MGP_C57BL6NJ_P0053817 Sec16a protein_coding protein_coding MGP_C57BL6NJ_T0053818.1 MGP_C57BL6NJ_G0025906.1 mouse_genomes_project 2 25179511 25182748 - Sec16a protein_coding processed_transcript MGP_C57BL6NJ_T0057548.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127920706 127952738 + MGP_C57BL6NJ_P0057548 Tmem62 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057549.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127920988 127952730 + MGP_C57BL6NJ_P0057549 Tmem62 protein_coding protein_coding MGP_C57BL6NJ_T0057550.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127921359 127924508 + Tmem62 protein_coding retained_intron MGP_C57BL6NJ_T0057551.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127924990 127934259 + Tmem62 protein_coding processed_transcript MGP_C57BL6NJ_T0057552.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127928272 127930862 + Tmem62 protein_coding processed_transcript MGP_C57BL6NJ_T0057553.1 MGP_C57BL6NJ_G0026797.1 mouse_genomes_project 2 127940176 127951929 + Tmem62 protein_coding retained_intron MGP_C57BL6NJ_T0058142.1 MGP_C57BL6NJ_G0026935.1 mouse_genomes_project 2 138287395 138303595 + MGP_C57BL6NJ_P0058142 Itpa protein_coding protein_coding MGP_C57BL6NJ_T0058143.1 MGP_C57BL6NJ_G0026935.1 mouse_genomes_project 2 138287590 138295719 + Itpa protein_coding retained_intron MGP_C57BL6NJ_T0058144.1 MGP_C57BL6NJ_G0026935.1 mouse_genomes_project 2 138287593 138295426 + Itpa protein_coding processed_transcript MGP_C57BL6NJ_T0058145.1 MGP_C57BL6NJ_G0026935.1 mouse_genomes_project 2 138287611 138291889 + Itpa protein_coding retained_intron MGP_C57BL6NJ_T0058146.1 MGP_C57BL6NJ_G0026935.1 mouse_genomes_project 2 138287650 138300736 + Itpa protein_coding processed_transcript MGP_C57BL6NJ_T0010640.1 MGP_C57BL6NJ_G0008725.1 mouse_genomes_project 2 38434416 38434557 - Gm27634 miRNA miRNA MGP_C57BL6NJ_T0060141.1 MGP_C57BL6NJ_G0027413.1 mouse_genomes_project 2 192180264 192194357 - MGP_C57BL6NJ_P0060141 Rbbp8nl protein_coding protein_coding MGP_C57BL6NJ_T0004341.1 MGP_C57BL6NJ_G0003825.1 mouse_genomes_project 2 192946923 192960918 + Gm14341 antisense antisense MGP_C57BL6NJ_T0101487.1 MGP_C57BL6NJ_G0039533.1 mouse_genomes_project 2 50052325 50052446 - Gm25215 snoRNA snoRNA MGP_C57BL6NJ_T0007434.1 MGP_C57BL6NJ_G0006098.1 mouse_genomes_project 2 98192379 98209432 + Gm10804 lincRNA lincRNA MGP_C57BL6NJ_T0007435.1 MGP_C57BL6NJ_G0006098.1 mouse_genomes_project 2 98192380 98196282 + Gm10804 lincRNA lincRNA MGP_C57BL6NJ_T0007436.1 MGP_C57BL6NJ_G0006098.1 mouse_genomes_project 2 98192381 98205961 + Gm10804 lincRNA lincRNA MGP_C57BL6NJ_T0007437.1 MGP_C57BL6NJ_G0006098.1 mouse_genomes_project 2 98207999 98208236 + Gm10804 lincRNA lincRNA MGP_C57BL6NJ_T0014046.1 MGP_C57BL6NJ_G0012091.1 mouse_genomes_project 2 116447485 116452760 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058065.1 MGP_C57BL6NJ_G0026914.1 mouse_genomes_project 2 137579520 137626156 + MGP_C57BL6NJ_P0058065 Tgm3 protein_coding protein_coding MGP_C57BL6NJ_T0056218.1 MGP_C57BL6NJ_G0026394.1 mouse_genomes_project 2 90303084 90409063 - MGP_C57BL6NJ_P0056218 protein_coding protein_coding MGP_C57BL6NJ_T0058991.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164901381 164955473 - MGP_C57BL6NJ_P0058991 Ncoa6 protein_coding protein_coding MGP_C57BL6NJ_T0058992.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164901390 165000962 - MGP_C57BL6NJ_P0058992 Ncoa6 protein_coding protein_coding MGP_C57BL6NJ_T0058993.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164901394 164911033 - Ncoa6 protein_coding retained_intron MGP_C57BL6NJ_T0058994.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164901394 164918830 - Ncoa6 protein_coding retained_intron MGP_C57BL6NJ_T0058995.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164922101 165001050 - MGP_C57BL6NJ_P0058995 Ncoa6 protein_coding protein_coding MGP_C57BL6NJ_T0058996.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164930694 164934211 - Ncoa6 protein_coding processed_transcript MGP_C57BL6NJ_T0058997.1 MGP_C57BL6NJ_G0027158.1 mouse_genomes_project 2 164935584 164955475 - MGP_C57BL6NJ_P0058997 Ncoa6 protein_coding protein_coding MGP_C57BL6NJ_T0054582.1 MGP_C57BL6NJ_G0026026.1 mouse_genomes_project 2 31861854 31868351 + MGP_C57BL6NJ_P0054582 Naif1 protein_coding protein_coding MGP_C57BL6NJ_T0056556.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95844661 95858497 + MGP_C57BL6NJ_P0056556 Arfgap2 protein_coding protein_coding MGP_C57BL6NJ_T0056557.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95844980 95858497 + MGP_C57BL6NJ_P0056557 Arfgap2 protein_coding protein_coding MGP_C57BL6NJ_T0056558.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95845011 95846233 + Arfgap2 protein_coding retained_intron MGP_C57BL6NJ_T0056559.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95845021 95848440 + Arfgap2 protein_coding retained_intron MGP_C57BL6NJ_T0056560.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95845389 95847077 + Arfgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0056561.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95849029 95853295 + Arfgap2 protein_coding retained_intron MGP_C57BL6NJ_T0056562.1 MGP_C57BL6NJ_G0026569.1 mouse_genomes_project 2 95849779 95853813 + Arfgap2 protein_coding retained_intron MGP_C57BL6NJ_T0010656.1 MGP_C57BL6NJ_G0008741.1 mouse_genomes_project 2 79150833 79150944 + Gm23164 miRNA miRNA MGP_C57BL6NJ_T0098858.1 MGP_C57BL6NJ_G0036922.1 mouse_genomes_project 2 28796959 28797290 - pseudogene pseudogene MGP_C57BL6NJ_T0059995.1 MGP_C57BL6NJ_G0027376.1 mouse_genomes_project 2 184513118 184541198 - MGP_C57BL6NJ_P0059995 Ctcfl protein_coding protein_coding MGP_C57BL6NJ_T0014065.1 MGP_C57BL6NJ_G0012110.1 mouse_genomes_project 2 126294385 126295063 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053094.1 MGP_C57BL6NJ_G0025773.1 mouse_genomes_project 2 11455435 11611790 - MGP_C57BL6NJ_P0053094 St8sia6 protein_coding protein_coding MGP_C57BL6NJ_T0053095.1 MGP_C57BL6NJ_G0025773.1 mouse_genomes_project 2 11461568 11611019 - St8sia6 protein_coding processed_transcript MGP_C57BL6NJ_T0101510.1 MGP_C57BL6NJ_G0039556.1 mouse_genomes_project 2 113927409 113927540 - Gm23749 snoRNA snoRNA MGP_C57BL6NJ_T0056621.1 MGP_C57BL6NJ_G0026579.1 mouse_genomes_project 2 96539437 96540877 + MGP_C57BL6NJ_P0056621 Chrm4 protein_coding protein_coding MGP_C57BL6NJ_T0058725.1 MGP_C57BL6NJ_G0027076.1 mouse_genomes_project 2 161235621 161241158 + MGP_C57BL6NJ_P0058725 Tcf15 protein_coding protein_coding MGP_C57BL6NJ_T0057146.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118897245 118918630 - Ryr3 protein_coding processed_transcript MGP_C57BL6NJ_T0057147.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118897254 119318475 - MGP_C57BL6NJ_P0057147 Ryr3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057148.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118897270 119318475 - MGP_C57BL6NJ_P0057148 Ryr3 protein_coding protein_coding MGP_C57BL6NJ_T0057149.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118897270 119508250 - MGP_C57BL6NJ_P0057149 Ryr3 protein_coding protein_coding MGP_C57BL6NJ_T0057150.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118897936 119508267 - Ryr3 protein_coding processed_transcript MGP_C57BL6NJ_T0057151.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 118902499 118906431 - Ryr3 protein_coding processed_transcript MGP_C57BL6NJ_T0057152.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 119136137 119189392 - Ryr3 protein_coding retained_intron MGP_C57BL6NJ_T0057153.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 119250286 119508261 - Ryr3 protein_coding retained_intron MGP_C57BL6NJ_T0057154.1 MGP_C57BL6NJ_G0026715.1 mouse_genomes_project 2 119283791 119508295 - Ryr3 protein_coding retained_intron MGP_C57BL6NJ_T0056066.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923452 87973934 - MGP_C57BL6NJ_P0056066 protein_coding protein_coding MGP_C57BL6NJ_T0056067.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923452 87973934 - MGP_C57BL6NJ_P0056067 protein_coding protein_coding MGP_C57BL6NJ_T0056068.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923452 87973934 - MGP_C57BL6NJ_P0056068 protein_coding protein_coding MGP_C57BL6NJ_T0056069.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923452 87973934 - MGP_C57BL6NJ_P0056069 protein_coding protein_coding MGP_C57BL6NJ_T0056070.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923452 87973934 - MGP_C57BL6NJ_P0056070 protein_coding protein_coding MGP_C57BL6NJ_T0056071.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923454 87973934 - MGP_C57BL6NJ_P0056071 protein_coding protein_coding MGP_C57BL6NJ_T0056072.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923454 87973934 - MGP_C57BL6NJ_P0056072 protein_coding protein_coding MGP_C57BL6NJ_T0056073.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87923454 87973934 - MGP_C57BL6NJ_P0056073 protein_coding protein_coding MGP_C57BL6NJ_T0056074.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87924162 87973929 - MGP_C57BL6NJ_P0056074 protein_coding protein_coding MGP_C57BL6NJ_T0056075.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87924164 87973729 - protein_coding processed_transcript MGP_C57BL6NJ_T0056076.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87924164 87972669 - MGP_C57BL6NJ_P0056076 protein_coding protein_coding MGP_C57BL6NJ_T0056077.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87924164 87973699 - MGP_C57BL6NJ_P0056077 protein_coding protein_coding MGP_C57BL6NJ_T0056079.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87925914 87933003 - protein_coding processed_transcript MGP_C57BL6NJ_T0056080.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87926010 87933023 - protein_coding processed_transcript MGP_C57BL6NJ_T0056081.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87926273 87949346 - MGP_C57BL6NJ_P0056081 protein_coding protein_coding MGP_C57BL6NJ_T0056082.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87932312 87935895 - protein_coding processed_transcript MGP_C57BL6NJ_T0056083.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87947660 87961380 - protein_coding processed_transcript MGP_C57BL6NJ_T0056084.1 MGP_C57BL6NJ_G0026317.1 mouse_genomes_project 2 87947699 87971726 - protein_coding processed_transcript MGP_C57BL6NJ_T0101538.1 MGP_C57BL6NJ_G0039584.1 mouse_genomes_project 2 168300278 168300391 - Gm26003 snoRNA snoRNA MGP_C57BL6NJ_T0057848.1 MGP_C57BL6NJ_G0026861.1 mouse_genomes_project 2 133905058 133941968 + MGP_C57BL6NJ_P0057848 Slc27a2 protein_coding protein_coding MGP_C57BL6NJ_T0057849.1 MGP_C57BL6NJ_G0026861.1 mouse_genomes_project 2 133906241 133918432 + Slc27a2 protein_coding processed_transcript MGP_C57BL6NJ_T0057850.1 MGP_C57BL6NJ_G0026861.1 mouse_genomes_project 2 133908779 133941663 + MGP_C57BL6NJ_P0057850 Slc27a2 protein_coding protein_coding MGP_C57BL6NJ_T0057851.1 MGP_C57BL6NJ_G0026861.1 mouse_genomes_project 2 133918506 133929216 + Slc27a2 protein_coding processed_transcript MGP_C57BL6NJ_T0013741.1 MGP_C57BL6NJ_G0011786.1 mouse_genomes_project 2 7068470 7068978 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018241.1 MGP_C57BL6NJ_G0015813.1 mouse_genomes_project 2 58427232 58435778 + 4930555B11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0010669.1 MGP_C57BL6NJ_G0008754.1 mouse_genomes_project 2 99026458 99026523 + Mir129b miRNA miRNA MGP_C57BL6NJ_T0055634.1 MGP_C57BL6NJ_G0026231.1 mouse_genomes_project 2 72676898 72713887 + MGP_C57BL6NJ_P0055634 Erich2 protein_coding protein_coding MGP_C57BL6NJ_T0055635.1 MGP_C57BL6NJ_G0026231.1 mouse_genomes_project 2 72676910 72713887 + MGP_C57BL6NJ_P0055635 Erich2 protein_coding protein_coding MGP_C57BL6NJ_T0055636.1 MGP_C57BL6NJ_G0026231.1 mouse_genomes_project 2 72677539 72710250 + Erich2 protein_coding retained_intron MGP_C57BL6NJ_T0055637.1 MGP_C57BL6NJ_G0026231.1 mouse_genomes_project 2 72677539 72695225 + Erich2 protein_coding retained_intron MGP_C57BL6NJ_T0055638.1 MGP_C57BL6NJ_G0026231.1 mouse_genomes_project 2 72677576 72699111 + MGP_C57BL6NJ_P0055638 Erich2 protein_coding protein_coding MGP_C57BL6NJ_T0056360.1 MGP_C57BL6NJ_G0026517.1 mouse_genomes_project 2 93774261 93775206 - MGP_C57BL6NJ_P0056360 Olfr1240 protein_coding protein_coding MGP_C57BL6NJ_T0014042.1 MGP_C57BL6NJ_G0012087.1 mouse_genomes_project 2 114641955 114642946 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013859.1 MGP_C57BL6NJ_G0011904.1 mouse_genomes_project 2 52313644 52314740 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013904.1 MGP_C57BL6NJ_G0011949.1 mouse_genomes_project 2 68349706 68352815 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056300.1 MGP_C57BL6NJ_G0026465.1 mouse_genomes_project 2 92233704 92235304 - MGP_C57BL6NJ_P0056300 protein_coding protein_coding MGP_C57BL6NJ_T0001209.1 MGP_C57BL6NJ_G0001115.1 mouse_genomes_project 2 39045924 39049404 - TEC TEC MGP_C57BL6NJ_T0010661.1 MGP_C57BL6NJ_G0008746.1 mouse_genomes_project 2 96557053 96557114 - Mir6999 miRNA miRNA MGP_C57BL6NJ_T0007575.1 MGP_C57BL6NJ_G0006211.1 mouse_genomes_project 2 179056658 179058569 - E130018N17Rik lincRNA lincRNA MGP_C57BL6NJ_T0059412.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170862322 170988197 - Zhx3 protein_coding processed_transcript MGP_C57BL6NJ_T0059420.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170878799 170987771 - MGP_C57BL6NJ_P0059420 Zhx3 protein_coding protein_coding MGP_C57BL6NJ_T0059421.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170879396 170974260 - MGP_C57BL6NJ_P0059421 Zhx3 protein_coding protein_coding MGP_C57BL6NJ_T0059422.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170884085 170988189 - MGP_C57BL6NJ_P0059422 Zhx3 protein_coding protein_coding MGP_C57BL6NJ_T0059423.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170897084 170988028 - MGP_C57BL6NJ_P0059423 Zhx3 protein_coding protein_coding MGP_C57BL6NJ_T0059424.1 MGP_C57BL6NJ_G0027231.1 mouse_genomes_project 2 170897121 170988189 - MGP_C57BL6NJ_P0059424 Zhx3 protein_coding protein_coding MGP_C57BL6NJ_T0010620.1 MGP_C57BL6NJ_G0008705.1 mouse_genomes_project 2 27705322 27705396 + Mir3088 miRNA miRNA MGP_C57BL6NJ_T0057289.1 MGP_C57BL6NJ_G0026747.1 mouse_genomes_project 2 125618147 125634005 + MGP_C57BL6NJ_P0057289 Bahd1 protein_coding protein_coding MGP_C57BL6NJ_T0057290.1 MGP_C57BL6NJ_G0026747.1 mouse_genomes_project 2 125619222 125642110 + MGP_C57BL6NJ_P0057290 Bahd1 protein_coding protein_coding MGP_C57BL6NJ_T0056282.1 MGP_C57BL6NJ_G0026448.1 mouse_genomes_project 2 91812154 91813132 + MGP_C57BL6NJ_P0056282 Olfr1145 protein_coding protein_coding MGP_C57BL6NJ_T0053113.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12429092 12433151 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053114.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12432843 12827803 + MGP_C57BL6NJ_P0053114 Cacnb2 protein_coding protein_coding MGP_C57BL6NJ_T0053115.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12433659 12801469 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053116.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12563895 12827802 + Cacnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0053117.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12588588 12802303 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053118.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12655151 12812811 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053119.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12655217 12826164 + MGP_C57BL6NJ_P0053119 Cacnb2 protein_coding protein_coding MGP_C57BL6NJ_T0053120.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12711836 12812726 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053121.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12711837 12812811 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053122.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12711850 12826102 + MGP_C57BL6NJ_P0053122 Cacnb2 protein_coding protein_coding MGP_C57BL6NJ_T0053123.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12712172 12804330 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053124.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12712602 12734558 + MGP_C57BL6NJ_P0053124 Cacnb2 protein_coding protein_coding MGP_C57BL6NJ_T0053125.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12712929 12806082 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053126.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12712933 12826991 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0053127.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12801387 12819721 + MGP_C57BL6NJ_P0053127 Cacnb2 protein_coding protein_coding MGP_C57BL6NJ_T0053128.1 MGP_C57BL6NJ_G0025779.1 mouse_genomes_project 2 12821685 12823989 + Cacnb2 protein_coding retained_intron MGP_C57BL6NJ_T0058953.1 MGP_C57BL6NJ_G0027151.1 mouse_genomes_project 2 164310706 164332649 - MGP_C57BL6NJ_P0058953 Eif2s2 protein_coding protein_coding MGP_C57BL6NJ_T0058954.1 MGP_C57BL6NJ_G0027151.1 mouse_genomes_project 2 164310714 164332496 - MGP_C57BL6NJ_P0058954 Eif2s2 protein_coding protein_coding MGP_C57BL6NJ_T0058955.1 MGP_C57BL6NJ_G0027151.1 mouse_genomes_project 2 164312412 164332418 - MGP_C57BL6NJ_P0058955 Eif2s2 protein_coding protein_coding MGP_C57BL6NJ_T0058956.1 MGP_C57BL6NJ_G0027151.1 mouse_genomes_project 2 164324086 164332545 - Eif2s2 protein_coding retained_intron MGP_C57BL6NJ_T0058957.1 MGP_C57BL6NJ_G0027151.1 mouse_genomes_project 2 164324121 164332522 - Eif2s2 protein_coding retained_intron MGP_C57BL6NJ_T0058716.1 MGP_C57BL6NJ_G0027072.1 mouse_genomes_project 2 161043817 161054639 - MGP_C57BL6NJ_P0058716 Fam110a protein_coding protein_coding MGP_C57BL6NJ_T0058717.1 MGP_C57BL6NJ_G0027072.1 mouse_genomes_project 2 161043817 161048355 - MGP_C57BL6NJ_P0058717 Fam110a protein_coding protein_coding MGP_C57BL6NJ_T0058718.1 MGP_C57BL6NJ_G0027072.1 mouse_genomes_project 2 161043817 161048386 - MGP_C57BL6NJ_P0058718 Fam110a protein_coding protein_coding MGP_C57BL6NJ_T0058719.1 MGP_C57BL6NJ_G0027072.1 mouse_genomes_project 2 161044156 161047814 - MGP_C57BL6NJ_P0058719 Fam110a protein_coding protein_coding MGP_C57BL6NJ_T0013855.1 MGP_C57BL6NJ_G0011900.1 mouse_genomes_project 2 51244108 51245088 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056314.1 MGP_C57BL6NJ_G0026478.1 mouse_genomes_project 2 92717643 92718030 - MGP_C57BL6NJ_P0056314 Olfr1187-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0056315.1 MGP_C57BL6NJ_G0026478.1 mouse_genomes_project 2 92717646 92717949 - MGP_C57BL6NJ_P0056315 Olfr1187-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0053653.1 MGP_C57BL6NJ_G0025873.1 mouse_genomes_project 2 24213709 24215504 - MGP_C57BL6NJ_P0053653 Phpt1 protein_coding protein_coding MGP_C57BL6NJ_T0053654.1 MGP_C57BL6NJ_G0025873.1 mouse_genomes_project 2 24213781 24215158 - Phpt1 protein_coding processed_transcript MGP_C57BL6NJ_T0054406.1 MGP_C57BL6NJ_G0026002.1 mouse_genomes_project 2 30518207 30571609 + MGP_C57BL6NJ_P0054406 Ncs1 protein_coding protein_coding MGP_C57BL6NJ_T0054407.1 MGP_C57BL6NJ_G0026002.1 mouse_genomes_project 2 30518550 30566734 + MGP_C57BL6NJ_P0054407 Ncs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103063.1 MGP_C57BL6NJ_G0040857.1 mouse_genomes_project 2 186673352 186676268 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059822.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177780900 177785879 + protein_coding antisense MGP_C57BL6NJ_T0059823.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177780900 177785878 + MGP_C57BL6NJ_P0059823 protein_coding protein_coding MGP_C57BL6NJ_T0059824.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177780901 177785591 + protein_coding retained_intron MGP_C57BL6NJ_T0059825.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177781187 177785399 + protein_coding retained_intron MGP_C57BL6NJ_T0059826.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177781189 177785739 + protein_coding retained_intron MGP_C57BL6NJ_T0059827.1 MGP_C57BL6NJ_G0027331.1 mouse_genomes_project 2 177781615 177785879 + protein_coding retained_intron MGP_C57BL6NJ_T0054469.1 MGP_C57BL6NJ_G0026014.1 mouse_genomes_project 2 31406545 31443440 - MGP_C57BL6NJ_P0054469 Fam78a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054472.1 MGP_C57BL6NJ_G0026014.1 mouse_genomes_project 2 31425827 31442547 - MGP_C57BL6NJ_P0054472 Fam78a protein_coding protein_coding MGP_C57BL6NJ_T0054473.1 MGP_C57BL6NJ_G0026014.1 mouse_genomes_project 2 31428380 31438116 - Fam78a protein_coding processed_transcript MGP_C57BL6NJ_T0054474.1 MGP_C57BL6NJ_G0026014.1 mouse_genomes_project 2 31442035 31443628 - Fam78a protein_coding processed_transcript MGP_C57BL6NJ_T0057433.1 MGP_C57BL6NJ_G0026781.1 mouse_genomes_project 2 126956302 127021732 - MGP_C57BL6NJ_P0057433 Ehd4 protein_coding protein_coding MGP_C57BL6NJ_T0057434.1 MGP_C57BL6NJ_G0026781.1 mouse_genomes_project 2 126969357 126996867 - Ehd4 protein_coding processed_transcript MGP_C57BL6NJ_T0057435.1 MGP_C57BL6NJ_G0026781.1 mouse_genomes_project 2 126969542 127004692 - Ehd4 protein_coding processed_transcript MGP_C57BL6NJ_T0057436.1 MGP_C57BL6NJ_G0026781.1 mouse_genomes_project 2 126989584 127021588 - Ehd4 protein_coding processed_transcript MGP_C57BL6NJ_T0010629.1 MGP_C57BL6NJ_G0008714.1 mouse_genomes_project 2 31543694 31543773 + Gm27805 miRNA miRNA MGP_C57BL6NJ_T0007500.1 MGP_C57BL6NJ_G0006148.1 mouse_genomes_project 2 140205554 140223487 - Gm14095 lincRNA lincRNA MGP_C57BL6NJ_T0056468.1 MGP_C57BL6NJ_G0026559.1 mouse_genomes_project 2 95591301 95601287 + MGP_C57BL6NJ_P0056468 Rapsn protein_coding protein_coding MGP_C57BL6NJ_T0056469.1 MGP_C57BL6NJ_G0026559.1 mouse_genomes_project 2 95591308 95601284 + MGP_C57BL6NJ_P0056469 Rapsn protein_coding protein_coding MGP_C57BL6NJ_T0056470.1 MGP_C57BL6NJ_G0026559.1 mouse_genomes_project 2 95591322 95601287 + MGP_C57BL6NJ_P0056470 Rapsn protein_coding protein_coding MGP_C57BL6NJ_T0056471.1 MGP_C57BL6NJ_G0026559.1 mouse_genomes_project 2 95598345 95601038 + Rapsn protein_coding retained_intron MGP_C57BL6NJ_T0004291.1 MGP_C57BL6NJ_G0003789.1 mouse_genomes_project 2 167394822 167396026 - Gm14286 antisense antisense MGP_C57BL6NJ_T0013766.1 MGP_C57BL6NJ_G0011811.1 mouse_genomes_project 2 16334614 16335093 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010626.1 MGP_C57BL6NJ_G0008711.1 mouse_genomes_project 2 29932721 29932805 + Mir3089 miRNA miRNA MGP_C57BL6NJ_T0057667.1 MGP_C57BL6NJ_G0026815.1 mouse_genomes_project 2 128421279 128427389 + MGP_C57BL6NJ_P0057667 protein_coding protein_coding MGP_C57BL6NJ_T0057668.1 MGP_C57BL6NJ_G0026815.1 mouse_genomes_project 2 128421452 128426974 + protein_coding retained_intron MGP_C57BL6NJ_T0057669.1 MGP_C57BL6NJ_G0026815.1 mouse_genomes_project 2 128421496 128432280 + MGP_C57BL6NJ_P0057669 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057670.1 MGP_C57BL6NJ_G0026815.1 mouse_genomes_project 2 128421496 128432282 + MGP_C57BL6NJ_P0057670 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056859.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108778928 108818680 - MGP_C57BL6NJ_P0056859 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056860.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108779520 108818568 - MGP_C57BL6NJ_P0056860 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056861.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108782006 108799192 - MGP_C57BL6NJ_P0056861 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056862.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108782203 108789747 - Ehf protein_coding retained_intron MGP_C57BL6NJ_T0056863.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108782571 108814967 - MGP_C57BL6NJ_P0056863 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056864.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108789598 108806369 - MGP_C57BL6NJ_P0056864 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056865.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108792292 108818322 - MGP_C57BL6NJ_P0056865 Ehf protein_coding protein_coding MGP_C57BL6NJ_T0056866.1 MGP_C57BL6NJ_G0026623.1 mouse_genomes_project 2 108794599 108818569 - Ehf protein_coding retained_intron MGP_C57BL6NJ_T0057475.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127338564 127395694 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057476.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127338564 127395554 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057477.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127347246 127395694 + MGP_C57BL6NJ_P0057477 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057478.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127347246 127395694 + MGP_C57BL6NJ_P0057478 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057479.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127364312 127395694 + MGP_C57BL6NJ_P0057479 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057480.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127364314 127395694 + MGP_C57BL6NJ_P0057480 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057481.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127364364 127395694 + MGP_C57BL6NJ_P0057481 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057482.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127364370 127395295 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057483.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127364370 127395694 + MGP_C57BL6NJ_P0057483 Capn3 protein_coding protein_coding MGP_C57BL6NJ_T0057484.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127374077 127374352 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057485.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127391022 127393997 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057486.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127392009 127393822 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0057487.1 MGP_C57BL6NJ_G0026788.1 mouse_genomes_project 2 127392083 127394175 + Capn3 protein_coding processed_transcript MGP_C57BL6NJ_T0010633.1 MGP_C57BL6NJ_G0008718.1 mouse_genomes_project 2 32098449 32098514 + miRNA miRNA MGP_C57BL6NJ_T0059523.1 MGP_C57BL6NJ_G0027256.1 mouse_genomes_project 2 174302373 174326117 + MGP_C57BL6NJ_P0059523 Ywhab protein_coding protein_coding MGP_C57BL6NJ_T0059524.1 MGP_C57BL6NJ_G0027256.1 mouse_genomes_project 2 174302916 174322812 + MGP_C57BL6NJ_P0059524 Ywhab protein_coding protein_coding MGP_C57BL6NJ_T0014002.1 MGP_C57BL6NJ_G0012047.1 mouse_genomes_project 2 100552925 100553043 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100191.1 MGP_C57BL6NJ_G0038237.1 mouse_genomes_project 2 54217203 54217309 - Gm25898 snRNA snRNA MGP_C57BL6NJ_T0058584.1 MGP_C57BL6NJ_G0027030.1 mouse_genomes_project 2 157481615 157485042 + MGP_C57BL6NJ_P0058584 Nxt1 protein_coding protein_coding MGP_C57BL6NJ_T0058585.1 MGP_C57BL6NJ_G0027030.1 mouse_genomes_project 2 157481640 157485042 + MGP_C57BL6NJ_P0058585 Nxt1 protein_coding protein_coding MGP_C57BL6NJ_T0004071.1 MGP_C57BL6NJ_G0003629.1 mouse_genomes_project 2 24379339 24380845 - A230005M16Rik antisense antisense MGP_C57BL6NJ_T0004072.1 MGP_C57BL6NJ_G0003629.1 mouse_genomes_project 2 24379996 24381755 - A230005M16Rik antisense antisense MGP_C57BL6NJ_T0001191.1 MGP_C57BL6NJ_G0001097.1 mouse_genomes_project 2 23457192 23461609 - TEC TEC MGP_C57BL6NJ_T0004073.1 MGP_C57BL6NJ_G0003630.1 mouse_genomes_project 2 24466110 24469775 + antisense antisense MGP_C57BL6NJ_T0056290.1 MGP_C57BL6NJ_G0026456.1 mouse_genomes_project 2 91994892 91995831 - MGP_C57BL6NJ_P0056290 Olfr1157 protein_coding protein_coding MGP_C57BL6NJ_T0055244.1 MGP_C57BL6NJ_G0026156.1 mouse_genomes_project 2 54106614 54142457 + Arl6ip6 protein_coding processed_transcript MGP_C57BL6NJ_T0055245.1 MGP_C57BL6NJ_G0026156.1 mouse_genomes_project 2 54106976 54144141 + MGP_C57BL6NJ_P0055245 Arl6ip6 protein_coding protein_coding MGP_C57BL6NJ_T0056583.1 MGP_C57BL6NJ_G0026573.1 mouse_genomes_project 2 96227071 96238148 - MGP_C57BL6NJ_P0056583 F2 protein_coding protein_coding MGP_C57BL6NJ_T0056584.1 MGP_C57BL6NJ_G0026573.1 mouse_genomes_project 2 96227080 96238141 - MGP_C57BL6NJ_P0056584 F2 protein_coding protein_coding MGP_C57BL6NJ_T0056585.1 MGP_C57BL6NJ_G0026573.1 mouse_genomes_project 2 96232906 96238129 - F2 protein_coding processed_transcript MGP_C57BL6NJ_T0053765.1 MGP_C57BL6NJ_G0025900.1 mouse_genomes_project 2 25080130 25084110 - Dnlz protein_coding processed_transcript MGP_C57BL6NJ_T0053766.1 MGP_C57BL6NJ_G0025900.1 mouse_genomes_project 2 25080130 25084120 - MGP_C57BL6NJ_P0053766 Dnlz protein_coding protein_coding MGP_C57BL6NJ_T0056430.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95299432 95348288 + MGP_C57BL6NJ_P0056430 Agbl2 protein_coding protein_coding MGP_C57BL6NJ_T0056431.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95299432 95365481 + MGP_C57BL6NJ_P0056431 Agbl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056432.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95299433 95341713 + MGP_C57BL6NJ_P0056432 Agbl2 protein_coding protein_coding MGP_C57BL6NJ_T0056433.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95299449 95347275 + MGP_C57BL6NJ_P0056433 Agbl2 protein_coding protein_coding MGP_C57BL6NJ_T0056434.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95301783 95345313 + MGP_C57BL6NJ_P0056434 Agbl2 protein_coding protein_coding MGP_C57BL6NJ_T0056435.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95301810 95360292 + Agbl2 protein_coding processed_transcript MGP_C57BL6NJ_T0056436.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95302118 95347275 + MGP_C57BL6NJ_P0056436 Agbl2 protein_coding protein_coding MGP_C57BL6NJ_T0056437.1 MGP_C57BL6NJ_G0026553.1 mouse_genomes_project 2 95302605 95322543 + Agbl2 protein_coding processed_transcript MGP_C57BL6NJ_T0010636.1 MGP_C57BL6NJ_G0008721.1 mouse_genomes_project 2 32137533 32137606 - Mir3960 miRNA miRNA MGP_C57BL6NJ_T0058627.1 MGP_C57BL6NJ_G0027049.1 mouse_genomes_project 2 159117678 159118476 - MGP_C57BL6NJ_P0058627 Gm10770 protein_coding protein_coding MGP_C57BL6NJ_T0053621.1 MGP_C57BL6NJ_G0025867.1 mouse_genomes_project 2 24125723 24128790 - MGP_C57BL6NJ_P0053621 Lcn12 protein_coding protein_coding MGP_C57BL6NJ_T0053622.1 MGP_C57BL6NJ_G0025867.1 mouse_genomes_project 2 24125725 24128311 - MGP_C57BL6NJ_P0053622 Lcn12 protein_coding protein_coding MGP_C57BL6NJ_T0099554.1 MGP_C57BL6NJ_G0037602.1 mouse_genomes_project 2 192978019 192981371 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0099555.1 MGP_C57BL6NJ_G0037602.1 mouse_genomes_project 2 192978327 192979687 + 9230112E08Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0055379.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62136624 62361169 - MGP_C57BL6NJ_P0055379 Rbms1 protein_coding protein_coding MGP_C57BL6NJ_T0055380.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62138377 62272836 - MGP_C57BL6NJ_P0055380 Rbms1 protein_coding protein_coding MGP_C57BL6NJ_T0055381.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62139146 62272868 - MGP_C57BL6NJ_P0055381 Rbms1 protein_coding protein_coding MGP_C57BL6NJ_T0055382.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62139984 62149700 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0055383.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62141889 62169086 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0055384.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62234028 62281246 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0055385.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62234028 62282221 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0055386.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62281402 62281699 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0055387.1 MGP_C57BL6NJ_G0026182.1 mouse_genomes_project 2 62281614 62282187 - Rbms1 protein_coding processed_transcript MGP_C57BL6NJ_T0018306.1 MGP_C57BL6NJ_G0015851.1 mouse_genomes_project 2 124495362 124764543 - Gm13986 processed_transcript processed_transcript MGP_C57BL6NJ_T0018307.1 MGP_C57BL6NJ_G0015851.1 mouse_genomes_project 2 124722457 124764432 - Gm13986 processed_transcript processed_transcript MGP_C57BL6NJ_T0018276.1 MGP_C57BL6NJ_G0015839.1 mouse_genomes_project 2 97728598 97734203 + 4631405J19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018277.1 MGP_C57BL6NJ_G0015839.1 mouse_genomes_project 2 97728598 97734203 + 4631405J19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018278.1 MGP_C57BL6NJ_G0015839.1 mouse_genomes_project 2 97729990 97734230 + 4631405J19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018279.1 MGP_C57BL6NJ_G0015839.1 mouse_genomes_project 2 97729991 97732500 + 4631405J19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018280.1 MGP_C57BL6NJ_G0015839.1 mouse_genomes_project 2 97731086 97746684 + 4631405J19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0101530.1 MGP_C57BL6NJ_G0039576.1 mouse_genomes_project 2 159873793 159873937 + Gm23598 snoRNA snoRNA MGP_C57BL6NJ_T0056403.1 MGP_C57BL6NJ_G0026545.1 mouse_genomes_project 2 94641455 94641992 - MGP_C57BL6NJ_P0056403 protein_coding protein_coding MGP_C57BL6NJ_T0056193.1 MGP_C57BL6NJ_G0026371.1 mouse_genomes_project 2 89597398 89606463 + MGP_C57BL6NJ_P0056193 protein_coding protein_coding MGP_C57BL6NJ_T0058094.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137888889 137968184 + MGP_C57BL6NJ_P0058094 Ebf4 protein_coding protein_coding MGP_C57BL6NJ_T0058095.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137889659 137968184 + Ebf4 protein_coding retained_intron MGP_C57BL6NJ_T0058096.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137889659 137968184 + MGP_C57BL6NJ_P0058096 Ebf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058097.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137889659 137968184 + MGP_C57BL6NJ_P0058097 Ebf4 protein_coding protein_coding MGP_C57BL6NJ_T0058098.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137889659 137968184 + MGP_C57BL6NJ_P0058098 Ebf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058099.1 MGP_C57BL6NJ_G0026920.1 mouse_genomes_project 2 137889659 137968184 + MGP_C57BL6NJ_P0058099 Ebf4 protein_coding protein_coding MGP_C57BL6NJ_T0014035.1 MGP_C57BL6NJ_G0012080.1 mouse_genomes_project 2 112698223 112698691 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100213.1 MGP_C57BL6NJ_G0038259.1 mouse_genomes_project 2 132372950 132373057 + Gm22352 snRNA snRNA MGP_C57BL6NJ_T0056278.1 MGP_C57BL6NJ_G0026445.1 mouse_genomes_project 2 91756539 91757475 - MGP_C57BL6NJ_P0056278 Olfr1141 protein_coding protein_coding MGP_C57BL6NJ_T0056495.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95755920 - MGP_C57BL6NJ_P0056495 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056496.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95756933 - MGP_C57BL6NJ_P0056496 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056497.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95756933 - MGP_C57BL6NJ_P0056497 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056498.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95752396 - MGP_C57BL6NJ_P0056498 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056499.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95756933 - MGP_C57BL6NJ_P0056499 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056500.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95755960 - MGP_C57BL6NJ_P0056500 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056501.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95756933 - MGP_C57BL6NJ_P0056501 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056502.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95755961 - MGP_C57BL6NJ_P0056502 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056503.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95752394 - MGP_C57BL6NJ_P0056503 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056504.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95752400 - MGP_C57BL6NJ_P0056504 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056505.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95756933 - MGP_C57BL6NJ_P0056505 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056506.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708212 95752405 - MGP_C57BL6NJ_P0056506 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056507.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0056508.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0056509.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0056510.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0056511.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0056512.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95708213 95756933 - MGP_C57BL6NJ_P0056512 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056513.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95709192 95710099 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056514.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95713884 95726923 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056515.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95714113 95724463 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056516.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95724118 95726767 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056517.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95727529 95732329 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056518.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95733017 95756098 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056519.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95733364 95756119 - MGP_C57BL6NJ_P0056519 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056520.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95739787 95747685 - MGP_C57BL6NJ_P0056520 Madd protein_coding protein_coding MGP_C57BL6NJ_T0056521.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95750715 95756952 - Madd protein_coding retained_intron MGP_C57BL6NJ_T0056522.1 MGP_C57BL6NJ_G0026564.1 mouse_genomes_project 2 95751527 95756111 - Madd protein_coding processed_transcript MGP_C57BL6NJ_T0010571.1 MGP_C57BL6NJ_G0008656.1 mouse_genomes_project 2 8043162 8043246 + Mir466o miRNA miRNA MGP_C57BL6NJ_T0004142.1 MGP_C57BL6NJ_G0003684.1 mouse_genomes_project 2 69179507 69263037 - Gm13599 antisense antisense MGP_C57BL6NJ_T0056337.1 MGP_C57BL6NJ_G0026498.1 mouse_genomes_project 2 93318684 93319623 - MGP_C57BL6NJ_P0056337 Olfr1215 protein_coding protein_coding MGP_C57BL6NJ_T0098863.1 MGP_C57BL6NJ_G0036927.1 mouse_genomes_project 2 108601447 108602090 + pseudogene pseudogene MGP_C57BL6NJ_T0013753.1 MGP_C57BL6NJ_G0011798.1 mouse_genomes_project 2 12551240 12552231 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055697.1 MGP_C57BL6NJ_G0026241.1 mouse_genomes_project 2 73646791 73708737 + MGP_C57BL6NJ_P0055697 Hat1 protein_coding protein_coding MGP_C57BL6NJ_T0055698.1 MGP_C57BL6NJ_G0026241.1 mouse_genomes_project 2 73647093 73708737 + MGP_C57BL6NJ_P0055698 Hat1 protein_coding protein_coding MGP_C57BL6NJ_T0055699.1 MGP_C57BL6NJ_G0026241.1 mouse_genomes_project 2 73683939 73705941 + Hat1 protein_coding processed_transcript MGP_C57BL6NJ_T0058229.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915193 138936922 + Pank2 protein_coding processed_transcript MGP_C57BL6NJ_T0058230.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915198 138955123 + MGP_C57BL6NJ_P0058230 Pank2 protein_coding protein_coding MGP_C57BL6NJ_T0058231.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915223 138952420 + MGP_C57BL6NJ_P0058231 Pank2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058232.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915266 138955121 + MGP_C57BL6NJ_P0058232 Pank2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058233.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915494 138952263 + MGP_C57BL6NJ_P0058233 Pank2 protein_coding protein_coding MGP_C57BL6NJ_T0058234.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138915537 138952623 + Pank2 protein_coding processed_transcript MGP_C57BL6NJ_T0058235.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138927569 138949390 + MGP_C57BL6NJ_P0058235 Pank2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058236.1 MGP_C57BL6NJ_G0026950.1 mouse_genomes_project 2 138927677 138952240 + MGP_C57BL6NJ_P0058236 Pank2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056339.1 MGP_C57BL6NJ_G0026500.1 mouse_genomes_project 2 93379625 93380561 - MGP_C57BL6NJ_P0056339 Olfr1218 protein_coding protein_coding MGP_C57BL6NJ_T0053539.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23948382 23959819 + MGP_C57BL6NJ_P0053539 Man1b1 protein_coding protein_coding MGP_C57BL6NJ_T0053540.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23948773 23974247 + MGP_C57BL6NJ_P0053540 Man1b1 protein_coding protein_coding MGP_C57BL6NJ_T0053541.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23948806 23961087 + Man1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0053542.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23948817 23954214 + Man1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0053543.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23954157 23961801 + Man1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0053544.1 MGP_C57BL6NJ_G0025856.1 mouse_genomes_project 2 23961535 23962239 + Man1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0004175.1 MGP_C57BL6NJ_G0003705.1 mouse_genomes_project 2 79404936 79470856 + Gm13938 antisense antisense MGP_C57BL6NJ_T0010672.1 MGP_C57BL6NJ_G0008757.1 mouse_genomes_project 2 109388514 109388610 - Gm22761 miRNA miRNA MGP_C57BL6NJ_T0007582.1 MGP_C57BL6NJ_G0006217.1 mouse_genomes_project 2 180275865 180278638 + 9430093N23Rik lincRNA lincRNA MGP_C57BL6NJ_T0014004.1 MGP_C57BL6NJ_G0012049.1 mouse_genomes_project 2 101934052 101934722 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057303.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125847501 125858559 + MGP_C57BL6NJ_P0057303 Rad51 protein_coding protein_coding MGP_C57BL6NJ_T0057304.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125847515 125872847 + MGP_C57BL6NJ_P0057304 Rad51 protein_coding protein_coding MGP_C57BL6NJ_T0057305.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125847522 125869156 + Rad51 protein_coding retained_intron MGP_C57BL6NJ_T0057306.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125847525 125872594 + MGP_C57BL6NJ_P0057306 Rad51 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057307.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125853418 125856975 + Rad51 protein_coding retained_intron MGP_C57BL6NJ_T0057308.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125858515 125883005 + MGP_C57BL6NJ_P0057308 Rad51 protein_coding protein_coding MGP_C57BL6NJ_T0057309.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125867074 125870012 + Rad51 protein_coding retained_intron MGP_C57BL6NJ_T0057310.1 MGP_C57BL6NJ_G0026752.1 mouse_genomes_project 2 125869718 125870765 + Rad51 protein_coding retained_intron MGP_C57BL6NJ_T0004334.1 MGP_C57BL6NJ_G0003821.1 mouse_genomes_project 2 185652451 185712056 - Gm10714 antisense antisense MGP_C57BL6NJ_T0004335.1 MGP_C57BL6NJ_G0003821.1 mouse_genomes_project 2 185652973 185653302 - Gm10714 antisense antisense MGP_C57BL6NJ_T0014102.1 MGP_C57BL6NJ_G0012147.1 mouse_genomes_project 2 141017019 141017629 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013900.1 MGP_C57BL6NJ_G0011945.1 mouse_genomes_project 2 66990033 66991043 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058765.1 MGP_C57BL6NJ_G0027095.1 mouse_genomes_project 2 161738420 161746643 + MGP_C57BL6NJ_P0058765 Defb36 protein_coding protein_coding MGP_C57BL6NJ_T0057584.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119084 128132728 + Tubgcp4 protein_coding processed_transcript MGP_C57BL6NJ_T0057585.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119598 128150633 + MGP_C57BL6NJ_P0057585 Tubgcp4 protein_coding protein_coding MGP_C57BL6NJ_T0057586.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119639 128150632 + MGP_C57BL6NJ_P0057586 Tubgcp4 protein_coding protein_coding MGP_C57BL6NJ_T0057587.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119645 128150633 + MGP_C57BL6NJ_P0057587 Tubgcp4 protein_coding protein_coding MGP_C57BL6NJ_T0057588.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119670 128150632 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0057589.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119676 128124216 + Tubgcp4 protein_coding processed_transcript MGP_C57BL6NJ_T0057590.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119698 128146074 + MGP_C57BL6NJ_P0057590 Tubgcp4 protein_coding protein_coding MGP_C57BL6NJ_T0057591.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128119723 128132771 + Tubgcp4 protein_coding processed_transcript MGP_C57BL6NJ_T0057592.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128120012 128135016 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0057593.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128121948 128132774 + Tubgcp4 protein_coding processed_transcript MGP_C57BL6NJ_T0057594.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128131910 128133101 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0057595.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128135656 128148912 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0057596.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128136399 128142930 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0057597.1 MGP_C57BL6NJ_G0026805.1 mouse_genomes_project 2 128142463 128148094 + Tubgcp4 protein_coding retained_intron MGP_C57BL6NJ_T0004277.1 MGP_C57BL6NJ_G0003776.1 mouse_genomes_project 2 161161886 161163840 - AA387200 antisense antisense MGP_C57BL6NJ_T0057676.1 MGP_C57BL6NJ_G0026816.1 mouse_genomes_project 2 128427258 128432479 + MGP_C57BL6NJ_P0057676 Hypk protein_coding protein_coding MGP_C57BL6NJ_T0057677.1 MGP_C57BL6NJ_G0026816.1 mouse_genomes_project 2 128430661 128432405 + Hypk protein_coding retained_intron MGP_C57BL6NJ_T0057678.1 MGP_C57BL6NJ_G0026816.1 mouse_genomes_project 2 128430931 128432641 + MGP_C57BL6NJ_P0057678 Hypk protein_coding protein_coding MGP_C57BL6NJ_T0057679.1 MGP_C57BL6NJ_G0026816.1 mouse_genomes_project 2 128431092 128432275 + Hypk protein_coding retained_intron MGP_C57BL6NJ_T0057680.1 MGP_C57BL6NJ_G0026816.1 mouse_genomes_project 2 128431102 128432332 + Hypk protein_coding processed_transcript MGP_C57BL6NJ_T0054602.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32017688 32038942 + MGP_C57BL6NJ_P0054602 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054603.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32017705 32037999 + MGP_C57BL6NJ_P0054603 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054604.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32024989 32040219 + MGP_C57BL6NJ_P0054604 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054605.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32025003 32040219 + MGP_C57BL6NJ_P0054605 St6galnac6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054606.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32026034 32040217 + MGP_C57BL6NJ_P0054606 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054607.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32026048 32036240 + St6galnac6 protein_coding retained_intron MGP_C57BL6NJ_T0054608.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32026427 32040217 + MGP_C57BL6NJ_P0054608 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054609.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32026680 32030291 + MGP_C57BL6NJ_P0054609 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054610.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32026976 32034360 + MGP_C57BL6NJ_P0054610 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054611.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32027006 32034380 + MGP_C57BL6NJ_P0054611 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0054612.1 MGP_C57BL6NJ_G0026032.1 mouse_genomes_project 2 32027265 32040226 + MGP_C57BL6NJ_P0054612 St6galnac6 protein_coding protein_coding MGP_C57BL6NJ_T0059039.1 MGP_C57BL6NJ_G0027166.1 mouse_genomes_project 2 165297803 165302148 + MGP_C57BL6NJ_P0059039 Procr protein_coding protein_coding MGP_C57BL6NJ_T0059040.1 MGP_C57BL6NJ_G0027166.1 mouse_genomes_project 2 165297809 165301005 + MGP_C57BL6NJ_P0059040 Procr protein_coding protein_coding MGP_C57BL6NJ_T0059041.1 MGP_C57BL6NJ_G0027166.1 mouse_genomes_project 2 165297836 165300472 + Procr protein_coding retained_intron MGP_C57BL6NJ_T0059042.1 MGP_C57BL6NJ_G0027166.1 mouse_genomes_project 2 165298030 165302145 + Procr protein_coding processed_transcript MGP_C57BL6NJ_T0058692.1 MGP_C57BL6NJ_G0027065.1 mouse_genomes_project 2 160613207 160630592 + MGP_C57BL6NJ_P0058692 Sdcbp2 protein_coding protein_coding MGP_C57BL6NJ_T0059765.1 MGP_C57BL6NJ_G0027322.1 mouse_genomes_project 2 176594373 176680004 + MGP_C57BL6NJ_P0059765 Ncoa3 protein_coding protein_coding MGP_C57BL6NJ_T0059766.1 MGP_C57BL6NJ_G0027322.1 mouse_genomes_project 2 176594374 176683213 + MGP_C57BL6NJ_P0059766 Ncoa3 protein_coding protein_coding MGP_C57BL6NJ_T0059767.1 MGP_C57BL6NJ_G0027322.1 mouse_genomes_project 2 176654035 176658504 + Ncoa3 protein_coding processed_transcript MGP_C57BL6NJ_T0059768.1 MGP_C57BL6NJ_G0027322.1 mouse_genomes_project 2 176666960 176672343 + Ncoa3 protein_coding retained_intron MGP_C57BL6NJ_T0059769.1 MGP_C57BL6NJ_G0027322.1 mouse_genomes_project 2 176673570 176678734 + Ncoa3 protein_coding retained_intron MGP_C57BL6NJ_T0013729.1 MGP_C57BL6NJ_G0011774.1 mouse_genomes_project 2 1099244 1099808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013926.1 MGP_C57BL6NJ_G0011971.1 mouse_genomes_project 2 76305149 76305413 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054242.1 MGP_C57BL6NJ_G0025981.1 mouse_genomes_project 2 29435271 29457475 + MGP_C57BL6NJ_P0054242 protein_coding protein_coding MGP_C57BL6NJ_T0100226.1 MGP_C57BL6NJ_G0038272.1 mouse_genomes_project 2 161543324 161543387 + Gm27343 snRNA snRNA MGP_C57BL6NJ_T0007335.1 MGP_C57BL6NJ_G0006016.1 mouse_genomes_project 2 27003856 27005339 - Gm13371 lincRNA lincRNA MGP_C57BL6NJ_T0099078.1 MGP_C57BL6NJ_G0037142.1 mouse_genomes_project 2 118724718 118724832 - n-R5s202 rRNA rRNA MGP_C57BL6NJ_T0053329.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21891240 21963026 - MGP_C57BL6NJ_P0053329 Spopl protein_coding protein_coding MGP_C57BL6NJ_T0053330.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21895692 21963000 - MGP_C57BL6NJ_P0053330 Spopl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053331.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21896290 21962900 - MGP_C57BL6NJ_P0053331 Spopl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053332.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21896554 21900244 - Spopl protein_coding retained_intron MGP_C57BL6NJ_T0053333.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21902823 21927118 - Spopl protein_coding retained_intron MGP_C57BL6NJ_T0053334.1 MGP_C57BL6NJ_G0025817.1 mouse_genomes_project 2 21932860 21963028 - MGP_C57BL6NJ_P0053334 Spopl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014032.1 MGP_C57BL6NJ_G0012077.1 mouse_genomes_project 2 110703853 110704275 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058281.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139936568 139944935 - MGP_C57BL6NJ_P0058281 Tmem230 protein_coding protein_coding MGP_C57BL6NJ_T0058282.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139936568 139944897 - MGP_C57BL6NJ_P0058282 Tmem230 protein_coding protein_coding MGP_C57BL6NJ_T0058283.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139936568 139944782 - MGP_C57BL6NJ_P0058283 Tmem230 protein_coding protein_coding MGP_C57BL6NJ_T0058284.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139936570 139944916 - MGP_C57BL6NJ_P0058284 Tmem230 protein_coding protein_coding MGP_C57BL6NJ_T0058285.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139942447 139944887 - Tmem230 protein_coding processed_transcript MGP_C57BL6NJ_T0058286.1 MGP_C57BL6NJ_G0026960.1 mouse_genomes_project 2 139942979 139944884 - Tmem230 protein_coding retained_intron MGP_C57BL6NJ_T0052761.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389309 429987 + MGP_C57BL6NJ_P0052761 Dclre1c protein_coding protein_coding MGP_C57BL6NJ_T0052762.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389309 433035 + MGP_C57BL6NJ_P0052762 Dclre1c protein_coding protein_coding MGP_C57BL6NJ_T0052763.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389328 404446 + Dclre1c protein_coding processed_transcript MGP_C57BL6NJ_T0052764.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389328 422968 + MGP_C57BL6NJ_P0052764 Dclre1c protein_coding protein_coding MGP_C57BL6NJ_T0052765.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389343 404484 + Dclre1c protein_coding processed_transcript MGP_C57BL6NJ_T0052766.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389343 429979 + MGP_C57BL6NJ_P0052766 Dclre1c protein_coding protein_coding MGP_C57BL6NJ_T0052767.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 389380 411092 + Dclre1c protein_coding retained_intron MGP_C57BL6NJ_T0052768.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 409714 427797 + MGP_C57BL6NJ_P0052768 Dclre1c protein_coding protein_coding MGP_C57BL6NJ_T0052769.1 MGP_C57BL6NJ_G0025723.1 mouse_genomes_project 2 421824 422743 + Dclre1c protein_coding processed_transcript MGP_C57BL6NJ_T0059632.1 MGP_C57BL6NJ_G0027300.1 mouse_genomes_project 2 175261771 175263911 - Spata25 protein_coding processed_transcript MGP_C57BL6NJ_T0059633.1 MGP_C57BL6NJ_G0027300.1 mouse_genomes_project 2 175262764 175263920 - MGP_C57BL6NJ_P0059633 Spata25 protein_coding protein_coding MGP_C57BL6NJ_T0018376.1 MGP_C57BL6NJ_G0015882.1 mouse_genomes_project 2 172873516 172880859 + 9430021M05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0101545.1 MGP_C57BL6NJ_G0039591.1 mouse_genomes_project 2 175030941 175031072 + Gm24473 snoRNA snoRNA MGP_C57BL6NJ_T0004297.1 MGP_C57BL6NJ_G0003795.1 mouse_genomes_project 2 172596520 172599653 + Ptprtos antisense antisense MGP_C57BL6NJ_T0014187.1 MGP_C57BL6NJ_G0012232.1 mouse_genomes_project 2 176203719 176204080 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010603.1 MGP_C57BL6NJ_G0008688.1 mouse_genomes_project 2 12092199 12092278 + Mir511 miRNA miRNA MGP_C57BL6NJ_T0101474.1 MGP_C57BL6NJ_G0039520.1 mouse_genomes_project 2 30457404 30457528 + Gm22516 snoRNA snoRNA MGP_C57BL6NJ_T0057698.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895324 128967391 + MGP_C57BL6NJ_P0057698 Casc4 protein_coding protein_coding MGP_C57BL6NJ_T0057699.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895324 128967406 + MGP_C57BL6NJ_P0057699 Casc4 protein_coding protein_coding MGP_C57BL6NJ_T0057700.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895483 128931444 + Casc4 protein_coding retained_intron MGP_C57BL6NJ_T0057701.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895484 128937442 + Casc4 protein_coding retained_intron MGP_C57BL6NJ_T0057702.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895484 128967109 + MGP_C57BL6NJ_P0057702 Casc4 protein_coding protein_coding MGP_C57BL6NJ_T0057703.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128895484 128967068 + MGP_C57BL6NJ_P0057703 Casc4 protein_coding protein_coding MGP_C57BL6NJ_T0057704.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128896059 128964899 + Casc4 protein_coding processed_transcript MGP_C57BL6NJ_T0057705.1 MGP_C57BL6NJ_G0026821.1 mouse_genomes_project 2 128930042 128964864 + MGP_C57BL6NJ_P0057705 Casc4 protein_coding protein_coding MGP_C57BL6NJ_T0056402.1 MGP_C57BL6NJ_G0026544.1 mouse_genomes_project 2 94526613 94527528 - MGP_C57BL6NJ_P0056402 Olfr1270 protein_coding protein_coding MGP_C57BL6NJ_T0058060.1 MGP_C57BL6NJ_G0026912.1 mouse_genomes_project 2 137241236 137254505 - MGP_C57BL6NJ_P0058060 Pdyn protein_coding protein_coding MGP_C57BL6NJ_T0058061.1 MGP_C57BL6NJ_G0026912.1 mouse_genomes_project 2 137243167 137253330 - MGP_C57BL6NJ_P0058061 Pdyn protein_coding protein_coding MGP_C57BL6NJ_T0058062.1 MGP_C57BL6NJ_G0026912.1 mouse_genomes_project 2 137252657 137254516 - Pdyn protein_coding retained_intron MGP_C57BL6NJ_T0056785.1 MGP_C57BL6NJ_G0026607.1 mouse_genomes_project 2 99219325 99243614 - MGP_C57BL6NJ_P0056785 Api5 protein_coding protein_coding MGP_C57BL6NJ_T0056786.1 MGP_C57BL6NJ_G0026607.1 mouse_genomes_project 2 99223884 99243590 - Api5 protein_coding processed_transcript MGP_C57BL6NJ_T0056787.1 MGP_C57BL6NJ_G0026607.1 mouse_genomes_project 2 99227957 99243758 - Api5 protein_coding retained_intron MGP_C57BL6NJ_T0056788.1 MGP_C57BL6NJ_G0026607.1 mouse_genomes_project 2 99232680 99237610 - Api5 protein_coding processed_transcript MGP_C57BL6NJ_T0057183.1 MGP_C57BL6NJ_G0026725.1 mouse_genomes_project 2 120878336 121018824 - MGP_C57BL6NJ_P0057183 Dph6 protein_coding protein_coding MGP_C57BL6NJ_T0057184.1 MGP_C57BL6NJ_G0026725.1 mouse_genomes_project 2 120880736 120912060 - Dph6 protein_coding processed_transcript MGP_C57BL6NJ_T0057185.1 MGP_C57BL6NJ_G0026725.1 mouse_genomes_project 2 120880830 121018790 - MGP_C57BL6NJ_P0057185 Dph6 protein_coding protein_coding MGP_C57BL6NJ_T0057186.1 MGP_C57BL6NJ_G0026725.1 mouse_genomes_project 2 120883818 121018901 - Dph6 protein_coding retained_intron MGP_C57BL6NJ_T0057187.1 MGP_C57BL6NJ_G0026725.1 mouse_genomes_project 2 121005431 121018842 - Dph6 protein_coding retained_intron MGP_C57BL6NJ_T0057074.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116630238 116687671 + MGP_C57BL6NJ_P0057074 Slc5a12 protein_coding protein_coding MGP_C57BL6NJ_T0057075.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116630247 116687681 + MGP_C57BL6NJ_P0057075 Slc5a12 protein_coding protein_coding MGP_C57BL6NJ_T0057076.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116630359 116659175 + Slc5a12 protein_coding retained_intron MGP_C57BL6NJ_T0057077.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116630542 116686318 + MGP_C57BL6NJ_P0057077 Slc5a12 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057078.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116630664 116640460 + Slc5a12 protein_coding processed_transcript MGP_C57BL6NJ_T0057079.1 MGP_C57BL6NJ_G0026668.1 mouse_genomes_project 2 116640394 116686486 + Slc5a12 protein_coding processed_transcript MGP_C57BL6NJ_T0010685.1 MGP_C57BL6NJ_G0008770.1 mouse_genomes_project 2 129794612 129794691 + Mir147 miRNA miRNA MGP_C57BL6NJ_T0099368.1 MGP_C57BL6NJ_G0037426.1 mouse_genomes_project 2 1351113 1353521 + Gm36988 sense_intronic sense_intronic MGP_C57BL6NJ_T0055427.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010753 64088502 - MGP_C57BL6NJ_P0055427 Fap protein_coding protein_coding MGP_C57BL6NJ_T0055428.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010923 64088407 - Fap protein_coding processed_transcript MGP_C57BL6NJ_T0055429.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010933 64013227 - MGP_C57BL6NJ_P0055429 Fap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055430.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010994 64088278 - MGP_C57BL6NJ_P0055430 Fap protein_coding protein_coding MGP_C57BL6NJ_T0055431.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010994 64088278 - MGP_C57BL6NJ_P0055431 Fap protein_coding protein_coding MGP_C57BL6NJ_T0055432.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64010994 64088278 - MGP_C57BL6NJ_P0055432 Fap protein_coding protein_coding MGP_C57BL6NJ_T0055433.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64038445 64075915 - Fap protein_coding retained_intron MGP_C57BL6NJ_T0055434.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64046879 64088350 - Fap protein_coding retained_intron MGP_C57BL6NJ_T0055435.1 MGP_C57BL6NJ_G0026189.1 mouse_genomes_project 2 64059640 64087987 - MGP_C57BL6NJ_P0055435 Fap protein_coding protein_coding MGP_C57BL6NJ_T0057933.1 MGP_C57BL6NJ_G0026878.1 mouse_genomes_project 2 134718270 134737283 + MGP_C57BL6NJ_P0057933 Astl protein_coding protein_coding MGP_C57BL6NJ_T0057934.1 MGP_C57BL6NJ_G0026878.1 mouse_genomes_project 2 134721261 134737282 + MGP_C57BL6NJ_P0057934 Astl protein_coding protein_coding MGP_C57BL6NJ_T0057935.1 MGP_C57BL6NJ_G0026878.1 mouse_genomes_project 2 134721275 134737281 + MGP_C57BL6NJ_P0057935 Astl protein_coding protein_coding MGP_C57BL6NJ_T0057936.1 MGP_C57BL6NJ_G0026878.1 mouse_genomes_project 2 134721549 134729800 + MGP_C57BL6NJ_P0057936 Astl protein_coding protein_coding MGP_C57BL6NJ_T0101509.1 MGP_C57BL6NJ_G0039555.1 mouse_genomes_project 2 113719642 113719774 - Gm23439 snoRNA snoRNA MGP_C57BL6NJ_T0103000.1 MGP_C57BL6NJ_G0040794.1 mouse_genomes_project 2 36193417 36193720 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014129.1 MGP_C57BL6NJ_G0012174.1 mouse_genomes_project 2 154496625 154497248 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014180.1 MGP_C57BL6NJ_G0012225.1 mouse_genomes_project 2 171391701 171392576 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059897.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179403831 179519398 - MGP_C57BL6NJ_P0059897 Nfatc2 protein_coding protein_coding MGP_C57BL6NJ_T0059898.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179403831 179519293 - MGP_C57BL6NJ_P0059898 Nfatc2 protein_coding protein_coding MGP_C57BL6NJ_T0059899.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179403834 179479784 - Nfatc2 protein_coding processed_transcript MGP_C57BL6NJ_T0059900.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179445412 179530673 - Nfatc2 protein_coding processed_transcript MGP_C57BL6NJ_T0059901.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179446315 179530698 - MGP_C57BL6NJ_P0059901 Nfatc2 protein_coding protein_coding MGP_C57BL6NJ_T0059902.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179446603 179519224 - MGP_C57BL6NJ_P0059902 Nfatc2 protein_coding protein_coding MGP_C57BL6NJ_T0059903.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179460680 179519364 - Nfatc2 protein_coding retained_intron MGP_C57BL6NJ_T0059904.1 MGP_C57BL6NJ_G0027350.1 mouse_genomes_project 2 179493974 179519398 - Nfatc2 protein_coding retained_intron MGP_C57BL6NJ_T0101481.1 MGP_C57BL6NJ_G0039527.1 mouse_genomes_project 2 37132653 37132764 - Snord90 snoRNA snoRNA MGP_C57BL6NJ_T0059862.1 MGP_C57BL6NJ_G0027340.1 mouse_genomes_project 2 178463451 178485087 - MGP_C57BL6NJ_P0059862 protein_coding protein_coding MGP_C57BL6NJ_T0059863.1 MGP_C57BL6NJ_G0027340.1 mouse_genomes_project 2 178467040 178485027 - MGP_C57BL6NJ_P0059863 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059864.1 MGP_C57BL6NJ_G0027340.1 mouse_genomes_project 2 178477715 178485085 - protein_coding retained_intron MGP_C57BL6NJ_T0099373.1 MGP_C57BL6NJ_G0037431.1 mouse_genomes_project 2 121327022 121330113 + sense_intronic sense_intronic MGP_C57BL6NJ_T0056369.1 MGP_C57BL6NJ_G0026523.1 mouse_genomes_project 2 93946370 93947315 - MGP_C57BL6NJ_P0056369 Olfr1247 protein_coding protein_coding MGP_C57BL6NJ_T0056370.1 MGP_C57BL6NJ_G0026523.1 mouse_genomes_project 2 93946370 93953445 - MGP_C57BL6NJ_P0056370 Olfr1247 protein_coding protein_coding MGP_C57BL6NJ_T0056371.1 MGP_C57BL6NJ_G0026523.1 mouse_genomes_project 2 93947071 93948860 - MGP_C57BL6NJ_P0056371 Olfr1247 protein_coding protein_coding MGP_C57BL6NJ_T0060373.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193749404 193754903 - MGP_C57BL6NJ_P0060373 Rgs19 protein_coding protein_coding MGP_C57BL6NJ_T0060374.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193749410 193750492 - MGP_C57BL6NJ_P0060374 Rgs19 protein_coding protein_coding MGP_C57BL6NJ_T0060375.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193749413 193754912 - MGP_C57BL6NJ_P0060375 Rgs19 protein_coding protein_coding MGP_C57BL6NJ_T0060376.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193749495 193752809 - MGP_C57BL6NJ_P0060376 Rgs19 protein_coding protein_coding MGP_C57BL6NJ_T0060377.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193749498 193754922 - MGP_C57BL6NJ_P0060377 Rgs19 protein_coding protein_coding MGP_C57BL6NJ_T0060378.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193750326 193754623 - Rgs19 protein_coding processed_transcript MGP_C57BL6NJ_T0060379.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193750411 193754941 - Rgs19 protein_coding processed_transcript MGP_C57BL6NJ_T0060380.1 MGP_C57BL6NJ_G0027454.1 mouse_genomes_project 2 193750653 193754899 - Rgs19 protein_coding processed_transcript MGP_C57BL6NJ_T0058331.1 MGP_C57BL6NJ_G0026970.1 mouse_genomes_project 2 140648646 140664027 - MGP_C57BL6NJ_P0058331 Lrrn4 protein_coding protein_coding MGP_C57BL6NJ_T0011786.1 MGP_C57BL6NJ_G0009871.1 mouse_genomes_project 2 185829894 185829958 + Gm27899 misc_RNA misc_RNA MGP_C57BL6NJ_T0058181.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138695879 138699325 - Adam33 protein_coding retained_intron MGP_C57BL6NJ_T0058182.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696105 138715506 - MGP_C57BL6NJ_P0058182 Adam33 protein_coding protein_coding MGP_C57BL6NJ_T0058183.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696113 138715261 - Adam33 protein_coding retained_intron MGP_C57BL6NJ_T0058184.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696151 138701692 - MGP_C57BL6NJ_P0058184 Adam33 protein_coding protein_coding MGP_C57BL6NJ_T0058185.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696163 138715237 - MGP_C57BL6NJ_P0058185 Adam33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058186.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696397 138715506 - MGP_C57BL6NJ_P0058186 Adam33 protein_coding protein_coding MGP_C57BL6NJ_T0058187.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138696398 138701806 - Adam33 protein_coding retained_intron MGP_C57BL6NJ_T0058188.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138698330 138699815 - MGP_C57BL6NJ_P0058188 Adam33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058189.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138698378 138699805 - Adam33 protein_coding processed_transcript MGP_C57BL6NJ_T0058190.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138698509 138699348 - Adam33 protein_coding processed_transcript MGP_C57BL6NJ_T0058191.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138698810 138699818 - Adam33 protein_coding retained_intron MGP_C57BL6NJ_T0058192.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138702850 138715205 - MGP_C57BL6NJ_P0058192 Adam33 protein_coding protein_coding MGP_C57BL6NJ_T0058193.1 MGP_C57BL6NJ_G0026940.1 mouse_genomes_project 2 138707369 138715235 - Adam33 protein_coding retained_intron MGP_C57BL6NJ_T0007552.1 MGP_C57BL6NJ_G0006192.1 mouse_genomes_project 2 173365896 173392057 + Gm11454 lincRNA lincRNA MGP_C57BL6NJ_T0013965.1 MGP_C57BL6NJ_G0012010.1 mouse_genomes_project 2 90013411 90016340 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014176.1 MGP_C57BL6NJ_G0012221.1 mouse_genomes_project 2 168423046 168423238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056108.1 MGP_C57BL6NJ_G0026327.1 mouse_genomes_project 2 88103438 88114341 - MGP_C57BL6NJ_P0056108 Serping1 protein_coding protein_coding MGP_C57BL6NJ_T0056109.1 MGP_C57BL6NJ_G0026327.1 mouse_genomes_project 2 88103557 88114381 - MGP_C57BL6NJ_P0056109 Serping1 protein_coding protein_coding MGP_C57BL6NJ_T0056110.1 MGP_C57BL6NJ_G0026327.1 mouse_genomes_project 2 88112115 88114113 - Serping1 protein_coding processed_transcript MGP_C57BL6NJ_T0055227.1 MGP_C57BL6NJ_G0026153.1 mouse_genomes_project 2 53581470 53631463 - MGP_C57BL6NJ_P0055227 Stam2 protein_coding protein_coding MGP_C57BL6NJ_T0055228.1 MGP_C57BL6NJ_G0026153.1 mouse_genomes_project 2 53587729 53631544 - MGP_C57BL6NJ_P0055228 Stam2 protein_coding protein_coding MGP_C57BL6NJ_T0055229.1 MGP_C57BL6NJ_G0026153.1 mouse_genomes_project 2 53597624 53631443 - Stam2 protein_coding retained_intron MGP_C57BL6NJ_T0055230.1 MGP_C57BL6NJ_G0026153.1 mouse_genomes_project 2 53597906 53631453 - MGP_C57BL6NJ_P0055230 Stam2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055231.1 MGP_C57BL6NJ_G0026153.1 mouse_genomes_project 2 53606156 53631419 - MGP_C57BL6NJ_P0055231 Stam2 protein_coding protein_coding MGP_C57BL6NJ_T0004053.1 MGP_C57BL6NJ_G0003615.1 mouse_genomes_project 2 12565208 12592484 - Gm13269 antisense antisense MGP_C57BL6NJ_T0004054.1 MGP_C57BL6NJ_G0003615.1 mouse_genomes_project 2 12565208 12588939 - Gm13269 antisense antisense MGP_C57BL6NJ_T0101522.1 MGP_C57BL6NJ_G0039568.1 mouse_genomes_project 2 137867923 137867993 + Gm23650 snoRNA snoRNA MGP_C57BL6NJ_T0056764.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98752744 98757015 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056765.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98752744 98757046 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056766.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98752744 98782929 - MGP_C57BL6NJ_P0056766 Alkbh3 protein_coding protein_coding MGP_C57BL6NJ_T0056767.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98752823 98753821 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056768.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98752831 98782852 - MGP_C57BL6NJ_P0056768 Alkbh3 protein_coding protein_coding MGP_C57BL6NJ_T0056769.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98768373 98782553 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056770.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98768442 98777364 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056771.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98768442 98782876 - MGP_C57BL6NJ_P0056771 Alkbh3 protein_coding protein_coding MGP_C57BL6NJ_T0056772.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98777950 98782876 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056773.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98778420 98782874 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056774.1 MGP_C57BL6NJ_G0026604.1 mouse_genomes_project 2 98780213 98782874 - Alkbh3 protein_coding processed_transcript MGP_C57BL6NJ_T0056056.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87748662 87790569 - MGP_C57BL6NJ_P0056056 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056057.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87748662 87792065 - MGP_C57BL6NJ_P0056057 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056058.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87748667 87750403 - Tfpi protein_coding processed_transcript MGP_C57BL6NJ_T0056059.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87748667 87790959 - MGP_C57BL6NJ_P0056059 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056060.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87755947 87793506 - MGP_C57BL6NJ_P0056060 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056061.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87755947 87793518 - MGP_C57BL6NJ_P0056061 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056062.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87755947 87793491 - MGP_C57BL6NJ_P0056062 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056063.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87755947 87775030 - MGP_C57BL6NJ_P0056063 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056064.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87756530 87790588 - MGP_C57BL6NJ_P0056064 Tfpi protein_coding protein_coding MGP_C57BL6NJ_T0056065.1 MGP_C57BL6NJ_G0026316.1 mouse_genomes_project 2 87759876 87790584 - Tfpi protein_coding processed_transcript MGP_C57BL6NJ_T0014038.1 MGP_C57BL6NJ_G0012083.1 mouse_genomes_project 2 112816805 112817642 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054229.1 MGP_C57BL6NJ_G0025978.1 mouse_genomes_project 2 29391052 29417128 + MGP_C57BL6NJ_P0054229 protein_coding protein_coding MGP_C57BL6NJ_T0054230.1 MGP_C57BL6NJ_G0025978.1 mouse_genomes_project 2 29391059 29417133 + MGP_C57BL6NJ_P0054230 protein_coding protein_coding MGP_C57BL6NJ_T0059325.1 MGP_C57BL6NJ_G0027210.1 mouse_genomes_project 2 167792292 167828760 + MGP_C57BL6NJ_P0059325 Vstm2l protein_coding protein_coding MGP_C57BL6NJ_T0056406.1 MGP_C57BL6NJ_G0026548.1 mouse_genomes_project 2 94739420 94742324 + MGP_C57BL6NJ_P0056406 protein_coding protein_coding MGP_C57BL6NJ_T0059935.1 MGP_C57BL6NJ_G0027356.1 mouse_genomes_project 2 181198877 181221459 - MGP_C57BL6NJ_P0059935 Zfp217 protein_coding protein_coding MGP_C57BL6NJ_T0059936.1 MGP_C57BL6NJ_G0027356.1 mouse_genomes_project 2 181198880 181232905 - MGP_C57BL6NJ_P0059936 Zfp217 protein_coding protein_coding MGP_C57BL6NJ_T0059937.1 MGP_C57BL6NJ_G0027356.1 mouse_genomes_project 2 181210567 181221459 - Zfp217 protein_coding processed_transcript MGP_C57BL6NJ_T0059938.1 MGP_C57BL6NJ_G0027356.1 mouse_genomes_project 2 181210853 181224184 - Zfp217 protein_coding processed_transcript MGP_C57BL6NJ_T0059939.1 MGP_C57BL6NJ_G0027356.1 mouse_genomes_project 2 181210953 181238302 - Zfp217 protein_coding processed_transcript MGP_C57BL6NJ_T0100209.1 MGP_C57BL6NJ_G0038255.1 mouse_genomes_project 2 124730419 124730577 - Gm25308 snRNA snRNA MGP_C57BL6NJ_T0060087.1 MGP_C57BL6NJ_G0027402.1 mouse_genomes_project 2 191791284 191860574 - MGP_C57BL6NJ_P0060087 Taf4 protein_coding protein_coding MGP_C57BL6NJ_T0060088.1 MGP_C57BL6NJ_G0027402.1 mouse_genomes_project 2 191792571 191857576 - MGP_C57BL6NJ_P0060088 Taf4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060089.1 MGP_C57BL6NJ_G0027402.1 mouse_genomes_project 2 191800348 191801329 - Taf4 protein_coding processed_transcript MGP_C57BL6NJ_T0060090.1 MGP_C57BL6NJ_G0027402.1 mouse_genomes_project 2 191801124 191808455 - Taf4 protein_coding processed_transcript MGP_C57BL6NJ_T0057228.1 MGP_C57BL6NJ_G0026733.1 mouse_genomes_project 2 124869590 124927213 - MGP_C57BL6NJ_P0057228 Fsip1 protein_coding protein_coding MGP_C57BL6NJ_T0057229.1 MGP_C57BL6NJ_G0026733.1 mouse_genomes_project 2 124913256 124927203 - MGP_C57BL6NJ_P0057229 Fsip1 protein_coding protein_coding MGP_C57BL6NJ_T0057170.1 MGP_C57BL6NJ_G0026721.1 mouse_genomes_project 2 120339578 120343597 - MGP_C57BL6NJ_P0057170 Gjd2 protein_coding protein_coding MGP_C57BL6NJ_T0056319.1 MGP_C57BL6NJ_G0026482.1 mouse_genomes_project 2 92931082 92932027 - MGP_C57BL6NJ_P0056319 Olfr1196 protein_coding protein_coding MGP_C57BL6NJ_T0014073.1 MGP_C57BL6NJ_G0012118.1 mouse_genomes_project 2 128724040 128724702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057740.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418515 129436452 - MGP_C57BL6NJ_P0057740 protein_coding protein_coding MGP_C57BL6NJ_T0057741.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418751 129438468 - MGP_C57BL6NJ_P0057741 protein_coding protein_coding MGP_C57BL6NJ_T0057742.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418751 129429210 - MGP_C57BL6NJ_P0057742 protein_coding protein_coding MGP_C57BL6NJ_T0057743.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418751 129438798 - MGP_C57BL6NJ_P0057743 protein_coding protein_coding MGP_C57BL6NJ_T0057744.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418822 129427890 - MGP_C57BL6NJ_P0057744 protein_coding protein_coding MGP_C57BL6NJ_T0057745.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418822 129427864 - MGP_C57BL6NJ_P0057745 protein_coding protein_coding MGP_C57BL6NJ_T0057746.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129418976 129438768 - MGP_C57BL6NJ_P0057746 protein_coding protein_coding MGP_C57BL6NJ_T0057747.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129419011 129426844 - MGP_C57BL6NJ_P0057747 protein_coding protein_coding MGP_C57BL6NJ_T0057748.1 MGP_C57BL6NJ_G0026835.1 mouse_genomes_project 2 129419127 129423755 - protein_coding retained_intron MGP_C57BL6NJ_T0010622.1 MGP_C57BL6NJ_G0008707.1 mouse_genomes_project 2 28926714 28926811 - Mir219a-2 miRNA miRNA MGP_C57BL6NJ_T0014149.1 MGP_C57BL6NJ_G0012194.1 mouse_genomes_project 2 160758225 160758676 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054009.1 MGP_C57BL6NJ_G0025943.1 mouse_genomes_project 2 27516808 27524291 - MGP_C57BL6NJ_P0054009 Cel protein_coding protein_coding MGP_C57BL6NJ_T0054010.1 MGP_C57BL6NJ_G0025943.1 mouse_genomes_project 2 27521530 27524332 - Cel protein_coding processed_transcript MGP_C57BL6NJ_T0056975.1 MGP_C57BL6NJ_G0026647.1 mouse_genomes_project 2 110771773 110773514 + MGP_C57BL6NJ_P0056975 Gm11060 protein_coding protein_coding MGP_C57BL6NJ_T0010611.1 MGP_C57BL6NJ_G0008696.1 mouse_genomes_project 2 23640516 23640583 - Gm24328 miRNA miRNA MGP_C57BL6NJ_T0056413.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95182062 95246304 + MGP_C57BL6NJ_P0056413 Nup160 protein_coding protein_coding MGP_C57BL6NJ_T0056414.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95190054 95199513 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0056415.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95196095 95201232 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0056416.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95197085 95209508 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0056417.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95206733 95209120 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0056418.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95227748 95228101 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0056419.1 MGP_C57BL6NJ_G0026551.1 mouse_genomes_project 2 95242699 95245760 + Nup160 protein_coding processed_transcript MGP_C57BL6NJ_T0059598.1 MGP_C57BL6NJ_G0027286.1 mouse_genomes_project 2 175060823 175067776 - MGP_C57BL6NJ_P0059598 Wfdc9 protein_coding protein_coding MGP_C57BL6NJ_T0059599.1 MGP_C57BL6NJ_G0027286.1 mouse_genomes_project 2 175060979 175062956 - MGP_C57BL6NJ_P0059599 Wfdc9 protein_coding protein_coding MGP_C57BL6NJ_T0004266.1 MGP_C57BL6NJ_G0003766.1 mouse_genomes_project 2 152872693 152873874 + 1700108N11Rik antisense antisense MGP_C57BL6NJ_T0004085.1 MGP_C57BL6NJ_G0003638.1 mouse_genomes_project 2 26159413 26164007 + AA645442 antisense antisense MGP_C57BL6NJ_T0007511.1 MGP_C57BL6NJ_G0006158.1 mouse_genomes_project 2 145711737 145896655 + Gm14064 lincRNA lincRNA MGP_C57BL6NJ_T0010700.1 MGP_C57BL6NJ_G0008785.1 mouse_genomes_project 2 162014689 162014749 + Mir5622 miRNA miRNA MGP_C57BL6NJ_T0056449.1 MGP_C57BL6NJ_G0026555.1 mouse_genomes_project 2 95423710 95428376 + MGP_C57BL6NJ_P0056449 C1qtnf4 protein_coding protein_coding MGP_C57BL6NJ_T0053743.1 MGP_C57BL6NJ_G0025895.1 mouse_genomes_project 2 24923990 24932068 - MGP_C57BL6NJ_P0053743 Lhx3 protein_coding protein_coding MGP_C57BL6NJ_T0053744.1 MGP_C57BL6NJ_G0025895.1 mouse_genomes_project 2 24923994 24926645 - Lhx3 protein_coding retained_intron MGP_C57BL6NJ_T0053745.1 MGP_C57BL6NJ_G0025895.1 mouse_genomes_project 2 24923994 24930354 - MGP_C57BL6NJ_P0053745 Lhx3 protein_coding protein_coding MGP_C57BL6NJ_T0053746.1 MGP_C57BL6NJ_G0025895.1 mouse_genomes_project 2 24926254 24927220 - Lhx3 protein_coding retained_intron MGP_C57BL6NJ_T0018332.1 MGP_C57BL6NJ_G0015860.1 mouse_genomes_project 2 136525257 136531164 + Gm14027 processed_transcript processed_transcript MGP_C57BL6NJ_T0054097.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 28831322 31691266 + Golga2 protein_coding retained_intron MGP_C57BL6NJ_T0054511.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31666582 31679678 + MGP_C57BL6NJ_P0054511 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054512.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667451 31691277 + MGP_C57BL6NJ_P0054512 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054513.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667511 31691268 + MGP_C57BL6NJ_P0054513 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054514.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667531 31686315 + MGP_C57BL6NJ_P0054514 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054515.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667544 31691269 + MGP_C57BL6NJ_P0054515 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054516.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667549 31681212 + MGP_C57BL6NJ_P0054516 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054517.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31667553 31685556 + MGP_C57BL6NJ_P0054517 Golga2 protein_coding protein_coding MGP_C57BL6NJ_T0054518.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31680690 31681173 + Golga2 protein_coding retained_intron MGP_C57BL6NJ_T0054519.1 MGP_C57BL6NJ_G0025960.1 mouse_genomes_project 2 31684575 31686305 + Golga2 protein_coding retained_intron MGP_C57BL6NJ_T0056249.1 MGP_C57BL6NJ_G0026424.1 mouse_genomes_project 2 91343295 91344240 + MGP_C57BL6NJ_P0056249 Olfr1121 protein_coding protein_coding MGP_C57BL6NJ_T0059956.1 MGP_C57BL6NJ_G0027365.1 mouse_genomes_project 2 183686200 183702807 - MGP_C57BL6NJ_P0059956 Aurka protein_coding protein_coding MGP_C57BL6NJ_T0059957.1 MGP_C57BL6NJ_G0027365.1 mouse_genomes_project 2 183686206 183702778 - MGP_C57BL6NJ_P0059957 Aurka protein_coding protein_coding MGP_C57BL6NJ_T0059958.1 MGP_C57BL6NJ_G0027365.1 mouse_genomes_project 2 183687176 183695403 - Aurka protein_coding retained_intron MGP_C57BL6NJ_T0059959.1 MGP_C57BL6NJ_G0027365.1 mouse_genomes_project 2 183698820 183702793 - Aurka protein_coding retained_intron MGP_C57BL6NJ_T0018254.1 MGP_C57BL6NJ_G0015823.1 mouse_genomes_project 2 78338666 78343921 + E030042O20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0056199.1 MGP_C57BL6NJ_G0026377.1 mouse_genomes_project 2 89766579 89767524 - MGP_C57BL6NJ_P0056199 Olfr1044 protein_coding protein_coding MGP_C57BL6NJ_T0004090.1 MGP_C57BL6NJ_G0003642.1 mouse_genomes_project 2 29390132 29391562 - 1700084E18Rik antisense antisense MGP_C57BL6NJ_T0004091.1 MGP_C57BL6NJ_G0003642.1 mouse_genomes_project 2 29390830 29391562 - 1700084E18Rik antisense pseudogene MGP_C57BL6NJ_T0103030.1 MGP_C57BL6NJ_G0040824.1 mouse_genomes_project 2 91840053 91840990 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098862.1 MGP_C57BL6NJ_G0036926.1 mouse_genomes_project 2 98729789 98730538 - pseudogene pseudogene MGP_C57BL6NJ_T0054930.1 MGP_C57BL6NJ_G0026089.1 mouse_genomes_project 2 36351119 36352049 + MGP_C57BL6NJ_P0054930 Olfr346 protein_coding protein_coding MGP_C57BL6NJ_T0055539.1 MGP_C57BL6NJ_G0026210.1 mouse_genomes_project 2 70573836 70611825 + MGP_C57BL6NJ_P0055539 4933409G03Rik protein_coding protein_coding MGP_C57BL6NJ_T0055540.1 MGP_C57BL6NJ_G0026210.1 mouse_genomes_project 2 70585918 70610143 + MGP_C57BL6NJ_P0055540 4933409G03Rik protein_coding protein_coding MGP_C57BL6NJ_T0007602.1 MGP_C57BL6NJ_G0006235.1 mouse_genomes_project 2 192279062 192294437 - B230312C02Rik lincRNA lincRNA MGP_C57BL6NJ_T0055032.1 MGP_C57BL6NJ_G0026125.1 mouse_genomes_project 2 38852675 38862216 + MGP_C57BL6NJ_P0055032 Wdr38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055033.1 MGP_C57BL6NJ_G0026125.1 mouse_genomes_project 2 38853518 38857636 + MGP_C57BL6NJ_P0055033 Wdr38 protein_coding protein_coding MGP_C57BL6NJ_T0055034.1 MGP_C57BL6NJ_G0026125.1 mouse_genomes_project 2 38853531 38855474 + Wdr38 protein_coding processed_transcript MGP_C57BL6NJ_T0013787.1 MGP_C57BL6NJ_G0011832.1 mouse_genomes_project 2 23029386 23030330 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001166.1 MGP_C57BL6NJ_G0001072.1 mouse_genomes_project 2 10078548 10081605 - TEC TEC MGP_C57BL6NJ_T0100197.1 MGP_C57BL6NJ_G0038243.1 mouse_genomes_project 2 78315930 78316029 - Gm24996 snRNA snRNA MGP_C57BL6NJ_T0059603.1 MGP_C57BL6NJ_G0027289.1 mouse_genomes_project 2 175102249 175104849 + MGP_C57BL6NJ_P0059603 Wfdc13 protein_coding protein_coding MGP_C57BL6NJ_T0058615.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158736609 158811015 + MGP_C57BL6NJ_P0058615 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0058617.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158738186 158917455 + MGP_C57BL6NJ_P0058617 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0058618.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158738267 158811056 + MGP_C57BL6NJ_P0058618 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0058619.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158738299 158811052 + MGP_C57BL6NJ_P0058619 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0058620.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158738320 158811182 + MGP_C57BL6NJ_P0058620 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0058621.1 MGP_C57BL6NJ_G0027045.1 mouse_genomes_project 2 158806286 158917455 + MGP_C57BL6NJ_P0058621 Syndig1 protein_coding protein_coding MGP_C57BL6NJ_T0014182.1 MGP_C57BL6NJ_G0012227.1 mouse_genomes_project 2 171641405 171641881 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057119.1 MGP_C57BL6NJ_G0026702.1 mouse_genomes_project 2 118302146 118303082 - MGP_C57BL6NJ_P0057119 Olfr1313 protein_coding protein_coding MGP_C57BL6NJ_T0052888.1 MGP_C57BL6NJ_G0025744.1 mouse_genomes_project 2 3343085 3377841 - MGP_C57BL6NJ_P0052888 Proser2 protein_coding protein_coding MGP_C57BL6NJ_T0052889.1 MGP_C57BL6NJ_G0025744.1 mouse_genomes_project 2 3345503 3377776 - MGP_C57BL6NJ_P0052889 Proser2 protein_coding protein_coding MGP_C57BL6NJ_T0052890.1 MGP_C57BL6NJ_G0025744.1 mouse_genomes_project 2 3346664 3377769 - MGP_C57BL6NJ_P0052890 Proser2 protein_coding protein_coding MGP_C57BL6NJ_T0052891.1 MGP_C57BL6NJ_G0025744.1 mouse_genomes_project 2 3372440 3377811 - Proser2 protein_coding processed_transcript MGP_C57BL6NJ_T0100200.1 MGP_C57BL6NJ_G0038246.1 mouse_genomes_project 2 84008023 84008130 - Gm23452 snRNA snRNA MGP_C57BL6NJ_T0057749.1 MGP_C57BL6NJ_G0026836.1 mouse_genomes_project 2 129566195 129648380 + protein_coding processed_transcript MGP_C57BL6NJ_T0007593.1 MGP_C57BL6NJ_G0006227.1 mouse_genomes_project 2 182457037 182462020 + 1700007M16Rik lincRNA lincRNA MGP_C57BL6NJ_T0013895.1 MGP_C57BL6NJ_G0011940.1 mouse_genomes_project 2 63188795 63189494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058408.1 MGP_C57BL6NJ_G0026988.1 mouse_genomes_project 2 148369553 148421911 - MGP_C57BL6NJ_P0058408 Esf1 protein_coding protein_coding MGP_C57BL6NJ_T0058409.1 MGP_C57BL6NJ_G0026988.1 mouse_genomes_project 2 148398389 148405745 - Esf1 protein_coding retained_intron MGP_C57BL6NJ_T0058411.1 MGP_C57BL6NJ_G0026988.1 mouse_genomes_project 2 148407325 148411969 - Esf1 protein_coding retained_intron MGP_C57BL6NJ_T0058412.1 MGP_C57BL6NJ_G0026988.1 mouse_genomes_project 2 148407360 148409277 - Esf1 protein_coding retained_intron MGP_C57BL6NJ_T0058413.1 MGP_C57BL6NJ_G0026988.1 mouse_genomes_project 2 148410848 148411969 - Esf1 protein_coding retained_intron MGP_C57BL6NJ_T0004240.1 MGP_C57BL6NJ_G0003750.1 mouse_genomes_project 2 139336299 139407957 - Gm14280 antisense antisense MGP_C57BL6NJ_T0010593.1 MGP_C57BL6NJ_G0008678.1 mouse_genomes_project 2 8069654 8069748 + Mir466n miRNA miRNA MGP_C57BL6NJ_T0010692.1 MGP_C57BL6NJ_G0008777.1 mouse_genomes_project 2 138684357 138684437 - Mir6973b miRNA miRNA MGP_C57BL6NJ_T0004317.1 MGP_C57BL6NJ_G0003807.1 mouse_genomes_project 2 176451494 176453547 + Gm11465 antisense antisense MGP_C57BL6NJ_T0056100.1 MGP_C57BL6NJ_G0026324.1 mouse_genomes_project 2 88055791 88060766 - MGP_C57BL6NJ_P0056100 Clp1 protein_coding protein_coding MGP_C57BL6NJ_T0056101.1 MGP_C57BL6NJ_G0026324.1 mouse_genomes_project 2 88056679 88060874 - MGP_C57BL6NJ_P0056101 Clp1 protein_coding protein_coding MGP_C57BL6NJ_T0056102.1 MGP_C57BL6NJ_G0026324.1 mouse_genomes_project 2 88056681 88060800 - Clp1 protein_coding processed_transcript MGP_C57BL6NJ_T0018274.1 MGP_C57BL6NJ_G0015837.1 mouse_genomes_project 2 97055213 97078616 + D930015M05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0056373.1 MGP_C57BL6NJ_G0026525.1 mouse_genomes_project 2 94005944 94008322 - MGP_C57BL6NJ_P0056373 Olfr1250 protein_coding protein_coding MGP_C57BL6NJ_T0056374.1 MGP_C57BL6NJ_G0026525.1 mouse_genomes_project 2 94006044 94011969 - MGP_C57BL6NJ_P0056374 Olfr1250 protein_coding protein_coding MGP_C57BL6NJ_T0007362.1 MGP_C57BL6NJ_G0006036.1 mouse_genomes_project 2 46132222 46134065 + 1700019E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0007363.1 MGP_C57BL6NJ_G0006036.1 mouse_genomes_project 2 46132417 46133685 + 1700019E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0001158.1 MGP_C57BL6NJ_G0001064.1 mouse_genomes_project 2 8819540 8822212 - TEC TEC MGP_C57BL6NJ_T0010576.1 MGP_C57BL6NJ_G0008661.1 mouse_genomes_project 2 8059360 8059487 + Gm26398 miRNA miRNA MGP_C57BL6NJ_T0058671.1 MGP_C57BL6NJ_G0027062.1 mouse_genomes_project 2 160098039 160101761 - MGP_C57BL6NJ_P0058671 protein_coding protein_coding MGP_C57BL6NJ_T0018238.1 MGP_C57BL6NJ_G0015811.1 mouse_genomes_project 2 53284195 53294062 + A430018G15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018239.1 MGP_C57BL6NJ_G0015811.1 mouse_genomes_project 2 53284195 53291070 + A430018G15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0058016.1 MGP_C57BL6NJ_G0026900.1 mouse_genomes_project 2 136467282 136468415 - MGP_C57BL6NJ_P0058016 Gm10762 protein_coding protein_coding MGP_C57BL6NJ_T0014075.1 MGP_C57BL6NJ_G0012120.1 mouse_genomes_project 2 129273397 129273817 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018284.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110180165 110189069 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0018285.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110180181 110189066 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0018286.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110180186 110192442 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0018287.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110180194 110189142 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0018288.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110180461 110189063 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0018289.1 MGP_C57BL6NJ_G0015843.1 mouse_genomes_project 2 110188209 110189845 + Platr14 processed_transcript processed_transcript MGP_C57BL6NJ_T0013743.1 MGP_C57BL6NJ_G0011788.1 mouse_genomes_project 2 8480711 8481132 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054936.1 MGP_C57BL6NJ_G0026094.1 mouse_genomes_project 2 36522821 36523760 + MGP_C57BL6NJ_P0054936 Olfr350 protein_coding protein_coding MGP_C57BL6NJ_T0055067.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40581622 40602348 - Lrp1b protein_coding processed_transcript MGP_C57BL6NJ_T0055068.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40581624 42849502 - MGP_C57BL6NJ_P0055068 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055069.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40581910 40696910 - MGP_C57BL6NJ_P0055069 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055070.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40581910 40616782 - MGP_C57BL6NJ_P0055070 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055071.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40587380 40647627 - MGP_C57BL6NJ_P0055071 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055072.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40670640 40692924 - Lrp1b protein_coding retained_intron MGP_C57BL6NJ_T0055073.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 40814613 41902785 - MGP_C57BL6NJ_P0055073 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055074.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 41336805 42848935 - MGP_C57BL6NJ_P0055074 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055075.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 41578883 42848951 - Lrp1b protein_coding retained_intron MGP_C57BL6NJ_T0055076.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 42198129 42848804 - MGP_C57BL6NJ_P0055076 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0055077.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 42487840 42849134 - Lrp1b protein_coding retained_intron MGP_C57BL6NJ_T0055078.1 MGP_C57BL6NJ_G0026131.1 mouse_genomes_project 2 42844836 42848893 - MGP_C57BL6NJ_P0055078 Lrp1b protein_coding protein_coding MGP_C57BL6NJ_T0010600.1 MGP_C57BL6NJ_G0008685.1 mouse_genomes_project 2 8073250 8073340 + Gm24806 miRNA miRNA MGP_C57BL6NJ_T0056182.1 MGP_C57BL6NJ_G0026361.1 mouse_genomes_project 2 89376613 89377561 + MGP_C57BL6NJ_P0056182 Olfr1022 protein_coding protein_coding MGP_C57BL6NJ_T0013930.1 MGP_C57BL6NJ_G0011975.1 mouse_genomes_project 2 78256004 78256770 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007293.1 MGP_C57BL6NJ_G0005984.1 mouse_genomes_project 2 934571 938006 - Gm13191 lincRNA lincRNA MGP_C57BL6NJ_T0103049.1 MGP_C57BL6NJ_G0040843.1 mouse_genomes_project 2 112935560 112935753 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0054646.1 MGP_C57BL6NJ_G0026038.1 mouse_genomes_project 2 32160480 32162739 - 6330409D20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054647.1 MGP_C57BL6NJ_G0026038.1 mouse_genomes_project 2 32160480 32168614 - MGP_C57BL6NJ_P0054647 6330409D20Rik protein_coding protein_coding MGP_C57BL6NJ_T0007569.1 MGP_C57BL6NJ_G0006206.1 mouse_genomes_project 2 178608205 178613308 + Gm14321 lincRNA lincRNA MGP_C57BL6NJ_T0007570.1 MGP_C57BL6NJ_G0006206.1 mouse_genomes_project 2 178608274 178612865 + Gm14321 lincRNA lincRNA MGP_C57BL6NJ_T0013933.1 MGP_C57BL6NJ_G0011978.1 mouse_genomes_project 2 80014615 80015725 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101495.1 MGP_C57BL6NJ_G0039541.1 mouse_genomes_project 2 67097775 67097889 - Gm24138 snoRNA snoRNA MGP_C57BL6NJ_T0059430.1 MGP_C57BL6NJ_G0027233.1 mouse_genomes_project 2 171021825 171027706 - MGP_C57BL6NJ_P0059430 Emilin3 protein_coding protein_coding MGP_C57BL6NJ_T0059431.1 MGP_C57BL6NJ_G0027233.1 mouse_genomes_project 2 171021826 171027717 - MGP_C57BL6NJ_P0059431 Emilin3 protein_coding protein_coding MGP_C57BL6NJ_T0007380.1 MGP_C57BL6NJ_G0006051.1 mouse_genomes_project 2 61368789 61370486 + Gm13572 lincRNA lincRNA MGP_C57BL6NJ_T0010675.1 MGP_C57BL6NJ_G0008760.1 mouse_genomes_project 2 118877746 118877886 + Gm44374 miRNA miRNA MGP_C57BL6NJ_T0013951.1 MGP_C57BL6NJ_G0011996.1 mouse_genomes_project 2 85228587 85229182 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001176.1 MGP_C57BL6NJ_G0001082.1 mouse_genomes_project 2 11857172 11859771 - TEC TEC MGP_C57BL6NJ_T0055873.1 MGP_C57BL6NJ_G0026283.1 mouse_genomes_project 2 79038531 79052310 + MGP_C57BL6NJ_P0055873 Rbm45 protein_coding protein_coding MGP_C57BL6NJ_T0010624.1 MGP_C57BL6NJ_G0008709.1 mouse_genomes_project 2 29094451 29094522 + Mir6997 miRNA miRNA MGP_C57BL6NJ_T0055295.1 MGP_C57BL6NJ_G0026171.1 mouse_genomes_project 2 60181838 60223067 + MGP_C57BL6NJ_P0055295 Gm11099 protein_coding protein_coding MGP_C57BL6NJ_T0054980.1 MGP_C57BL6NJ_G0026116.1 mouse_genomes_project 2 37252204 37253044 + Gpr21 protein_coding processed_transcript MGP_C57BL6NJ_T0054982.1 MGP_C57BL6NJ_G0026116.1 mouse_genomes_project 2 37252498 37256476 + MGP_C57BL6NJ_P0054982 Gpr21 protein_coding protein_coding MGP_C57BL6NJ_T0004273.1 MGP_C57BL6NJ_G0003773.1 mouse_genomes_project 2 160736433 160743412 - Tmem74bos antisense antisense MGP_C57BL6NJ_T0004274.1 MGP_C57BL6NJ_G0003773.1 mouse_genomes_project 2 160737986 160743136 - Tmem74bos antisense antisense MGP_C57BL6NJ_T0056037.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954375 86987174 + Itgav protein_coding retained_intron MGP_C57BL6NJ_T0056038.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954375 87043825 + MGP_C57BL6NJ_P0056038 Itgav protein_coding protein_coding MGP_C57BL6NJ_T0056039.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954430 86978321 + MGP_C57BL6NJ_P0056039 Itgav protein_coding protein_coding MGP_C57BL6NJ_T0056040.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954435 86970722 + Itgav protein_coding processed_transcript MGP_C57BL6NJ_T0056041.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954444 86978749 + Itgav protein_coding retained_intron MGP_C57BL6NJ_T0056042.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954505 86955768 + Itgav protein_coding processed_transcript MGP_C57BL6NJ_T0056043.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 86954533 87043825 + MGP_C57BL6NJ_P0056043 Itgav protein_coding protein_coding MGP_C57BL6NJ_T0056044.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 87038757 87040894 + MGP_C57BL6NJ_P0056044 Itgav protein_coding protein_coding MGP_C57BL6NJ_T0056045.1 MGP_C57BL6NJ_G0026311.1 mouse_genomes_project 2 87039829 87043825 + MGP_C57BL6NJ_P0056045 Itgav protein_coding protein_coding MGP_C57BL6NJ_T0057353.1 MGP_C57BL6NJ_G0026766.1 mouse_genomes_project 2 126333858 126382199 + MGP_C57BL6NJ_P0057353 Chp1 protein_coding protein_coding MGP_C57BL6NJ_T0057354.1 MGP_C57BL6NJ_G0026766.1 mouse_genomes_project 2 126333949 126364616 + Chp1 protein_coding retained_intron MGP_C57BL6NJ_T0057355.1 MGP_C57BL6NJ_G0026766.1 mouse_genomes_project 2 126333988 126379572 + MGP_C57BL6NJ_P0057355 Chp1 protein_coding protein_coding MGP_C57BL6NJ_T0004045.1 MGP_C57BL6NJ_G0003608.1 mouse_genomes_project 2 4180962 4183549 + Gm13389 antisense antisense MGP_C57BL6NJ_T0007513.1 MGP_C57BL6NJ_G0006160.1 mouse_genomes_project 2 146688248 146754378 + Gm14061 lincRNA lincRNA MGP_C57BL6NJ_T0060009.1 MGP_C57BL6NJ_G0027382.1 mouse_genomes_project 2 185140277 185188779 + MGP_C57BL6NJ_P0060009 Rab22a protein_coding protein_coding MGP_C57BL6NJ_T0060010.1 MGP_C57BL6NJ_G0027382.1 mouse_genomes_project 2 185140277 185188751 + MGP_C57BL6NJ_P0060010 Rab22a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060011.1 MGP_C57BL6NJ_G0027382.1 mouse_genomes_project 2 185140373 185182590 + MGP_C57BL6NJ_P0060011 Rab22a protein_coding protein_coding MGP_C57BL6NJ_T0007465.1 MGP_C57BL6NJ_G0006122.1 mouse_genomes_project 2 121773525 121790530 - 4930528P14Rik lincRNA lincRNA MGP_C57BL6NJ_T0056001.1 MGP_C57BL6NJ_G0026301.1 mouse_genomes_project 2 83247078 83249963 + MGP_C57BL6NJ_P0056001 Prdx6b protein_coding protein_coding MGP_C57BL6NJ_T0004101.1 MGP_C57BL6NJ_G0003652.1 mouse_genomes_project 2 32283976 32285959 + Gm13524 antisense antisense MGP_C57BL6NJ_T0057129.1 MGP_C57BL6NJ_G0026709.1 mouse_genomes_project 2 118513472 118660452 + MGP_C57BL6NJ_P0057129 Gm21985 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055541.1 MGP_C57BL6NJ_G0026211.1 mouse_genomes_project 2 70654571 70687634 + MGP_C57BL6NJ_P0055541 4932414N04Rik protein_coding protein_coding MGP_C57BL6NJ_T0055542.1 MGP_C57BL6NJ_G0026211.1 mouse_genomes_project 2 70655969 70745246 + MGP_C57BL6NJ_P0055542 4932414N04Rik protein_coding protein_coding MGP_C57BL6NJ_T0055543.1 MGP_C57BL6NJ_G0026211.1 mouse_genomes_project 2 70655998 70668515 + 4932414N04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0055544.1 MGP_C57BL6NJ_G0026211.1 mouse_genomes_project 2 70657927 70745244 + MGP_C57BL6NJ_P0055544 4932414N04Rik protein_coding protein_coding MGP_C57BL6NJ_T0055545.1 MGP_C57BL6NJ_G0026211.1 mouse_genomes_project 2 70719650 70720656 + 4932414N04Rik protein_coding retained_intron MGP_C57BL6NJ_T0004156.1 MGP_C57BL6NJ_G0003694.1 mouse_genomes_project 2 75403763 75416016 + Sp3os antisense antisense MGP_C57BL6NJ_T0004157.1 MGP_C57BL6NJ_G0003694.1 mouse_genomes_project 2 75403763 75416251 + Sp3os antisense antisense MGP_C57BL6NJ_T0004158.1 MGP_C57BL6NJ_G0003694.1 mouse_genomes_project 2 75403855 75416120 + Sp3os antisense antisense MGP_C57BL6NJ_T0004159.1 MGP_C57BL6NJ_G0003694.1 mouse_genomes_project 2 75414814 75416181 + Sp3os antisense antisense MGP_C57BL6NJ_T0014067.1 MGP_C57BL6NJ_G0012112.1 mouse_genomes_project 2 126729916 126730251 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014209.1 MGP_C57BL6NJ_G0012254.1 mouse_genomes_project 2 188805810 188806359 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056238.1 MGP_C57BL6NJ_G0026413.1 mouse_genomes_project 2 90973358 90974297 - MGP_C57BL6NJ_P0056238 Olfr1107 protein_coding protein_coding MGP_C57BL6NJ_T0056472.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612223 95617647 + MGP_C57BL6NJ_P0056472 Psmc3 protein_coding protein_coding MGP_C57BL6NJ_T0056473.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612269 95624582 + MGP_C57BL6NJ_P0056473 Psmc3 protein_coding protein_coding MGP_C57BL6NJ_T0056474.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612309 95614150 + Psmc3 protein_coding processed_transcript MGP_C57BL6NJ_T0056475.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612314 95617647 + MGP_C57BL6NJ_P0056475 Psmc3 protein_coding protein_coding MGP_C57BL6NJ_T0056476.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612492 95616060 + MGP_C57BL6NJ_P0056476 Psmc3 protein_coding protein_coding MGP_C57BL6NJ_T0056477.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612515 95615211 + MGP_C57BL6NJ_P0056477 Psmc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056478.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612596 95613933 + Psmc3 protein_coding processed_transcript MGP_C57BL6NJ_T0056479.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612692 95613768 + Psmc3 protein_coding processed_transcript MGP_C57BL6NJ_T0056480.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95612787 95614143 + Psmc3 protein_coding processed_transcript MGP_C57BL6NJ_T0056481.1 MGP_C57BL6NJ_G0026560.1 mouse_genomes_project 2 95616323 95617649 + Psmc3 protein_coding processed_transcript MGP_C57BL6NJ_T0010594.1 MGP_C57BL6NJ_G0008679.1 mouse_genomes_project 2 8070213 8070309 + Mir669o miRNA miRNA MGP_C57BL6NJ_T0054666.1 MGP_C57BL6NJ_G0026041.1 mouse_genomes_project 2 32207317 32209129 + MGP_C57BL6NJ_P0054666 Ptrh1 protein_coding protein_coding MGP_C57BL6NJ_T0054667.1 MGP_C57BL6NJ_G0026041.1 mouse_genomes_project 2 32207347 32208287 + Ptrh1 protein_coding processed_transcript MGP_C57BL6NJ_T0054668.1 MGP_C57BL6NJ_G0026041.1 mouse_genomes_project 2 32207396 32208981 + Ptrh1 protein_coding retained_intron MGP_C57BL6NJ_T0100230.1 MGP_C57BL6NJ_G0038276.1 mouse_genomes_project 2 173794529 173794632 + Gm25881 snRNA snRNA MGP_C57BL6NJ_T0014053.1 MGP_C57BL6NJ_G0012098.1 mouse_genomes_project 2 118148557 118150289 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056933.1 MGP_C57BL6NJ_G0026636.1 mouse_genomes_project 2 109705045 109707026 + MGP_C57BL6NJ_P0056933 A930018P22Rik protein_coding protein_coding MGP_C57BL6NJ_T0058298.1 MGP_C57BL6NJ_G0026963.1 mouse_genomes_project 2 140043789 140096541 - MGP_C57BL6NJ_P0058298 Prokr2 protein_coding protein_coding MGP_C57BL6NJ_T0058299.1 MGP_C57BL6NJ_G0026963.1 mouse_genomes_project 2 140081443 140096539 - MGP_C57BL6NJ_P0058299 Prokr2 protein_coding protein_coding MGP_C57BL6NJ_T0058300.1 MGP_C57BL6NJ_G0026963.1 mouse_genomes_project 2 140081443 140096514 - MGP_C57BL6NJ_P0058300 Prokr2 protein_coding protein_coding MGP_C57BL6NJ_T0058301.1 MGP_C57BL6NJ_G0026963.1 mouse_genomes_project 2 140082279 140096561 - MGP_C57BL6NJ_P0058301 Prokr2 protein_coding protein_coding MGP_C57BL6NJ_T0058302.1 MGP_C57BL6NJ_G0026963.1 mouse_genomes_project 2 140092681 140096535 - MGP_C57BL6NJ_P0058302 Prokr2 protein_coding protein_coding MGP_C57BL6NJ_T0014007.1 MGP_C57BL6NJ_G0012052.1 mouse_genomes_project 2 103362068 103362240 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054429.1 MGP_C57BL6NJ_G0026006.1 mouse_genomes_project 2 30935345 30951109 + MGP_C57BL6NJ_P0054429 Prdm12 protein_coding protein_coding MGP_C57BL6NJ_T0053992.1 MGP_C57BL6NJ_G0025939.1 mouse_genomes_project 2 27428229 27431342 + MGP_C57BL6NJ_P0053992 Mrps2 protein_coding protein_coding MGP_C57BL6NJ_T0053993.1 MGP_C57BL6NJ_G0025939.1 mouse_genomes_project 2 27428245 27431329 + Mrps2 protein_coding processed_transcript MGP_C57BL6NJ_T0053994.1 MGP_C57BL6NJ_G0025939.1 mouse_genomes_project 2 27428253 27431329 + Mrps2 protein_coding processed_transcript MGP_C57BL6NJ_T0057921.1 MGP_C57BL6NJ_G0026875.1 mouse_genomes_project 2 134620797 134634687 + MGP_C57BL6NJ_P0057921 Tmem127 protein_coding protein_coding MGP_C57BL6NJ_T0057922.1 MGP_C57BL6NJ_G0026875.1 mouse_genomes_project 2 134620858 134630729 + MGP_C57BL6NJ_P0057922 Tmem127 protein_coding protein_coding MGP_C57BL6NJ_T0057923.1 MGP_C57BL6NJ_G0026875.1 mouse_genomes_project 2 134620862 134631101 + MGP_C57BL6NJ_P0057923 Tmem127 protein_coding protein_coding MGP_C57BL6NJ_T0055671.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73260628 73300691 + MGP_C57BL6NJ_P0055671 Dcaf17 protein_coding protein_coding MGP_C57BL6NJ_T0055672.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73261058 73292132 + MGP_C57BL6NJ_P0055672 Dcaf17 protein_coding protein_coding MGP_C57BL6NJ_T0055673.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73261146 73304351 + MGP_C57BL6NJ_P0055673 Dcaf17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055674.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73261152 73302717 + MGP_C57BL6NJ_P0055674 Dcaf17 protein_coding protein_coding MGP_C57BL6NJ_T0055675.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73261294 73304002 + MGP_C57BL6NJ_P0055675 Dcaf17 protein_coding protein_coding MGP_C57BL6NJ_T0055676.1 MGP_C57BL6NJ_G0026237.1 mouse_genomes_project 2 73289309 73296134 + Dcaf17 protein_coding processed_transcript MGP_C57BL6NJ_T0056321.1 MGP_C57BL6NJ_G0026484.1 mouse_genomes_project 2 92976035 92976962 - MGP_C57BL6NJ_P0056321 Olfr1198 protein_coding protein_coding MGP_C57BL6NJ_T0057811.1 MGP_C57BL6NJ_G0026851.1 mouse_genomes_project 2 132859183 132923496 - MGP_C57BL6NJ_P0057811 Cep152 protein_coding protein_coding MGP_C57BL6NJ_T0004215.1 MGP_C57BL6NJ_G0003730.1 mouse_genomes_project 2 124982157 124985410 + 1700054M17Rik antisense antisense MGP_C57BL6NJ_T0014191.1 MGP_C57BL6NJ_G0012236.1 mouse_genomes_project 2 177719868 177725169 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058019.1 MGP_C57BL6NJ_G0026902.1 mouse_genomes_project 2 136547474 136557455 - MGP_C57BL6NJ_P0058019 protein_coding protein_coding MGP_C57BL6NJ_T0053071.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10837236 11042337 - MGP_C57BL6NJ_P0053071 Rsu1 protein_coding protein_coding MGP_C57BL6NJ_T0053072.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10837427 11042419 - MGP_C57BL6NJ_P0053072 Rsu1 protein_coding protein_coding MGP_C57BL6NJ_T0053073.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10837610 11042398 - MGP_C57BL6NJ_P0053073 Rsu1 protein_coding protein_coding MGP_C57BL6NJ_T0053074.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10933915 11042312 - Rsu1 protein_coding retained_intron MGP_C57BL6NJ_T0053075.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10985960 11042337 - Rsu1 protein_coding retained_intron MGP_C57BL6NJ_T0053076.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10986730 11042274 - MGP_C57BL6NJ_P0053076 Rsu1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053077.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10988553 11042225 - Rsu1 protein_coding retained_intron MGP_C57BL6NJ_T0053078.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 10989066 11042295 - MGP_C57BL6NJ_P0053078 Rsu1 protein_coding protein_coding MGP_C57BL6NJ_T0053079.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 11038459 11042315 - Rsu1 protein_coding retained_intron MGP_C57BL6NJ_T0053080.1 MGP_C57BL6NJ_G0025769.1 mouse_genomes_project 2 11041763 11042300 - Rsu1 protein_coding retained_intron MGP_C57BL6NJ_T0011787.1 MGP_C57BL6NJ_G0009872.1 mouse_genomes_project 2 185842227 185842349 + Gm27869 misc_RNA misc_RNA MGP_C57BL6NJ_T0056274.1 MGP_C57BL6NJ_G0026441.1 mouse_genomes_project 2 91690757 91691690 - MGP_C57BL6NJ_P0056274 Olfr1136 protein_coding protein_coding MGP_C57BL6NJ_T0054910.1 MGP_C57BL6NJ_G0026079.1 mouse_genomes_project 2 35780598 35800295 - MGP_C57BL6NJ_P0054910 Rbm18 protein_coding protein_coding MGP_C57BL6NJ_T0054911.1 MGP_C57BL6NJ_G0026079.1 mouse_genomes_project 2 35782119 35800304 - MGP_C57BL6NJ_P0054911 Rbm18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054912.1 MGP_C57BL6NJ_G0026079.1 mouse_genomes_project 2 35782294 35800343 - MGP_C57BL6NJ_P0054912 Rbm18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054913.1 MGP_C57BL6NJ_G0026079.1 mouse_genomes_project 2 35789924 35800339 - Rbm18 protein_coding retained_intron MGP_C57BL6NJ_T0004188.1 MGP_C57BL6NJ_G0003715.1 mouse_genomes_project 2 107456325 107460094 + Gm13920 antisense antisense MGP_C57BL6NJ_T0004104.1 MGP_C57BL6NJ_G0003655.1 mouse_genomes_project 2 32919140 32921546 + Gm13536 antisense antisense MGP_C57BL6NJ_T0018361.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168295618 168298762 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018362.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297225 168303429 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018363.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297683 168303438 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018364.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297683 168303499 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018365.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297683 168303441 - Snhg17 processed_transcript retained_intron MGP_C57BL6NJ_T0018366.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297703 168303432 - Snhg17 processed_transcript retained_intron MGP_C57BL6NJ_T0018367.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168297940 168300383 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018368.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168301157 168303394 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0018369.1 MGP_C57BL6NJ_G0015878.1 mouse_genomes_project 2 168302785 168303461 - Snhg17 processed_transcript lincRNA MGP_C57BL6NJ_T0058484.1 MGP_C57BL6NJ_G0027007.1 mouse_genomes_project 2 153019691 153081422 - MGP_C57BL6NJ_P0058484 Dzank1 protein_coding protein_coding MGP_C57BL6NJ_T0058485.1 MGP_C57BL6NJ_G0027007.1 mouse_genomes_project 2 153019693 153081438 - MGP_C57BL6NJ_P0058485 Dzank1 protein_coding protein_coding MGP_C57BL6NJ_T0058486.1 MGP_C57BL6NJ_G0027007.1 mouse_genomes_project 2 153062847 153081388 - Dzank1 protein_coding retained_intron MGP_C57BL6NJ_T0058487.1 MGP_C57BL6NJ_G0027007.1 mouse_genomes_project 2 153076486 153080672 - Dzank1 protein_coding processed_transcript MGP_C57BL6NJ_T0018230.1 MGP_C57BL6NJ_G0015807.1 mouse_genomes_project 2 35194600 35203765 - Gm13446 processed_transcript processed_transcript MGP_C57BL6NJ_T0018231.1 MGP_C57BL6NJ_G0015807.1 mouse_genomes_project 2 35199911 35203548 - Gm13446 processed_transcript processed_transcript MGP_C57BL6NJ_T0056136.1 MGP_C57BL6NJ_G0026336.1 mouse_genomes_project 2 88360661 88400530 - MGP_C57BL6NJ_P0056136 P2rx3 protein_coding protein_coding MGP_C57BL6NJ_T0056137.1 MGP_C57BL6NJ_G0026336.1 mouse_genomes_project 2 88360862 88398390 - MGP_C57BL6NJ_P0056137 P2rx3 protein_coding protein_coding MGP_C57BL6NJ_T0056138.1 MGP_C57BL6NJ_G0026336.1 mouse_genomes_project 2 88361032 88400163 - MGP_C57BL6NJ_P0056138 P2rx3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056139.1 MGP_C57BL6NJ_G0026336.1 mouse_genomes_project 2 88386953 88396378 - P2rx3 protein_coding processed_transcript MGP_C57BL6NJ_T0056140.1 MGP_C57BL6NJ_G0026336.1 mouse_genomes_project 2 88395121 88396262 - P2rx3 protein_coding processed_transcript MGP_C57BL6NJ_T0004316.1 MGP_C57BL6NJ_G0003806.1 mouse_genomes_project 2 175955931 175964153 + Gm14437 antisense antisense MGP_C57BL6NJ_T0101535.1 MGP_C57BL6NJ_G0039581.1 mouse_genomes_project 2 165191313 165191446 - Gm22334 snoRNA snoRNA MGP_C57BL6NJ_T0007427.1 MGP_C57BL6NJ_G0006091.1 mouse_genomes_project 2 95815578 95816785 + A330069E16Rik lincRNA lincRNA MGP_C57BL6NJ_T0099366.1 MGP_C57BL6NJ_G0037424.1 mouse_genomes_project 2 1200584 1203130 + Gm37107 sense_intronic sense_intronic MGP_C57BL6NJ_T0018333.1 MGP_C57BL6NJ_G0015861.1 mouse_genomes_project 2 136571711 136578505 - Gm14022 processed_transcript processed_transcript MGP_C57BL6NJ_T0013945.1 MGP_C57BL6NJ_G0011990.1 mouse_genomes_project 2 83469045 83469327 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053680.1 MGP_C57BL6NJ_G0025880.1 mouse_genomes_project 2 24314504 24327894 + MGP_C57BL6NJ_P0053680 Lcn5 protein_coding protein_coding MGP_C57BL6NJ_T0053681.1 MGP_C57BL6NJ_G0025880.1 mouse_genomes_project 2 24314507 24328038 + MGP_C57BL6NJ_P0053681 Lcn5 protein_coding protein_coding MGP_C57BL6NJ_T0053682.1 MGP_C57BL6NJ_G0025880.1 mouse_genomes_project 2 24314507 24328370 + MGP_C57BL6NJ_P0053682 Lcn5 protein_coding protein_coding MGP_C57BL6NJ_T0053683.1 MGP_C57BL6NJ_G0025880.1 mouse_genomes_project 2 24317474 24328034 + Lcn5 protein_coding processed_transcript MGP_C57BL6NJ_T0059977.1 MGP_C57BL6NJ_G0027372.1 mouse_genomes_project 2 184258226 184332514 - MGP_C57BL6NJ_P0059977 Bmp7 protein_coding protein_coding MGP_C57BL6NJ_T0059978.1 MGP_C57BL6NJ_G0027372.1 mouse_genomes_project 2 184306097 184332285 - Bmp7 protein_coding retained_intron MGP_C57BL6NJ_T0058751.1 MGP_C57BL6NJ_G0027084.1 mouse_genomes_project 2 161540156 161572930 + MGP_C57BL6NJ_P0058751 6820408C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0058752.1 MGP_C57BL6NJ_G0027084.1 mouse_genomes_project 2 161556506 161572929 + MGP_C57BL6NJ_P0058752 6820408C15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058753.1 MGP_C57BL6NJ_G0027084.1 mouse_genomes_project 2 161556533 161568243 + MGP_C57BL6NJ_P0058753 6820408C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0101462.1 MGP_C57BL6NJ_G0039508.1 mouse_genomes_project 2 7618672 7618800 - Gm23608 snoRNA snoRNA MGP_C57BL6NJ_T0100189.1 MGP_C57BL6NJ_G0038235.1 mouse_genomes_project 2 44754098 44754207 + Gm22867 snRNA snRNA MGP_C57BL6NJ_T0058877.1 MGP_C57BL6NJ_G0027128.1 mouse_genomes_project 2 163272741 163277131 + Bpifb4 protein_coding retained_intron MGP_C57BL6NJ_T0058878.1 MGP_C57BL6NJ_G0027128.1 mouse_genomes_project 2 163272750 163298631 + MGP_C57BL6NJ_P0058878 Bpifb4 protein_coding protein_coding MGP_C57BL6NJ_T0058879.1 MGP_C57BL6NJ_G0027128.1 mouse_genomes_project 2 163275391 163298382 + MGP_C57BL6NJ_P0058879 Bpifb4 protein_coding protein_coding MGP_C57BL6NJ_T0058880.1 MGP_C57BL6NJ_G0027128.1 mouse_genomes_project 2 163276797 163279367 + Bpifb4 protein_coding retained_intron MGP_C57BL6NJ_T0058881.1 MGP_C57BL6NJ_G0027128.1 mouse_genomes_project 2 163278452 163298382 + MGP_C57BL6NJ_P0058881 Bpifb4 protein_coding protein_coding MGP_C57BL6NJ_T0055336.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61225160 61339300 - MGP_C57BL6NJ_P0055336 Baz2b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055337.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61225164 61462846 - MGP_C57BL6NJ_P0055337 Baz2b protein_coding protein_coding MGP_C57BL6NJ_T0055338.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61225246 61335952 - MGP_C57BL6NJ_P0055338 Baz2b protein_coding protein_coding MGP_C57BL6NJ_T0055339.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61228986 61238338 - MGP_C57BL6NJ_P0055339 Baz2b protein_coding protein_coding MGP_C57BL6NJ_T0055340.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61239981 61249733 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055341.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61242711 61246352 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055342.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61250522 61275105 - MGP_C57BL6NJ_P0055342 Baz2b protein_coding protein_coding MGP_C57BL6NJ_T0055343.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61280350 61286932 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055344.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61304713 61462889 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055345.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61310218 61424090 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055346.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61334313 61462741 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055347.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61410864 61553028 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055348.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61549394 61552990 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055349.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61549861 61552402 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0055350.1 MGP_C57BL6NJ_G0026176.1 mouse_genomes_project 2 61549862 61552937 - Baz2b protein_coding processed_transcript MGP_C57BL6NJ_T0014014.1 MGP_C57BL6NJ_G0012059.1 mouse_genomes_project 2 106941158 106941369 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057991.1 MGP_C57BL6NJ_G0026894.1 mouse_genomes_project 2 136059317 136061819 + MGP_C57BL6NJ_P0057991 protein_coding protein_coding MGP_C57BL6NJ_T0057992.1 MGP_C57BL6NJ_G0026894.1 mouse_genomes_project 2 136059380 136066417 + MGP_C57BL6NJ_P0057992 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057993.1 MGP_C57BL6NJ_G0026894.1 mouse_genomes_project 2 136062139 136064796 + MGP_C57BL6NJ_P0057993 protein_coding protein_coding MGP_C57BL6NJ_T0004127.1 MGP_C57BL6NJ_G0003672.1 mouse_genomes_project 2 61688957 61723804 + Gm13571 antisense antisense MGP_C57BL6NJ_T0004128.1 MGP_C57BL6NJ_G0003672.1 mouse_genomes_project 2 61706058 61714654 + Gm13571 antisense antisense MGP_C57BL6NJ_T0013941.1 MGP_C57BL6NJ_G0011986.1 mouse_genomes_project 2 81911698 81911900 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060150.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192513220 192517551 + MGP_C57BL6NJ_P0060150 Mrgbp protein_coding protein_coding MGP_C57BL6NJ_T0060151.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192514628 192518204 + MGP_C57BL6NJ_P0060151 Mrgbp protein_coding protein_coding MGP_C57BL6NJ_T0060152.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192514639 192518221 + Mrgbp protein_coding retained_intron MGP_C57BL6NJ_T0060153.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192514642 192518221 + Mrgbp protein_coding retained_intron MGP_C57BL6NJ_T0060154.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192514648 192518221 + Mrgbp protein_coding retained_intron MGP_C57BL6NJ_T0060155.1 MGP_C57BL6NJ_G0027417.1 mouse_genomes_project 2 192514674 192518221 + Mrgbp protein_coding retained_intron MGP_C57BL6NJ_T0100184.1 MGP_C57BL6NJ_G0038230.1 mouse_genomes_project 2 32011448 32011553 - Gm23369 snRNA snRNA MGP_C57BL6NJ_T0014047.1 MGP_C57BL6NJ_G0012092.1 mouse_genomes_project 2 117277651 117282333 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100236.1 MGP_C57BL6NJ_G0038282.1 mouse_genomes_project 2 193563879 193564042 + Gm25184 snRNA snRNA MGP_C57BL6NJ_T0056761.1 MGP_C57BL6NJ_G0026602.1 mouse_genomes_project 2 98729220 98730460 - MGP_C57BL6NJ_P0056761 protein_coding protein_coding MGP_C57BL6NJ_T0056762.1 MGP_C57BL6NJ_G0026602.1 mouse_genomes_project 2 98729226 98730612 - MGP_C57BL6NJ_P0056762 protein_coding protein_coding MGP_C57BL6NJ_T0004301.1 MGP_C57BL6NJ_G0003798.1 mouse_genomes_project 2 173773885 173815429 - Hnf4aos antisense antisense MGP_C57BL6NJ_T0004302.1 MGP_C57BL6NJ_G0003798.1 mouse_genomes_project 2 173773885 173815429 - Hnf4aos antisense antisense MGP_C57BL6NJ_T0004303.1 MGP_C57BL6NJ_G0003798.1 mouse_genomes_project 2 173774272 173815401 - Hnf4aos antisense antisense MGP_C57BL6NJ_T0056347.1 MGP_C57BL6NJ_G0026507.1 mouse_genomes_project 2 93527790 93528723 - MGP_C57BL6NJ_P0056347 Olfr1226 protein_coding protein_coding MGP_C57BL6NJ_T0010707.1 MGP_C57BL6NJ_G0008792.1 mouse_genomes_project 2 168602662 168602720 + Mir3474 miRNA miRNA MGP_C57BL6NJ_T0055186.1 MGP_C57BL6NJ_G0026145.1 mouse_genomes_project 2 52399187 52400085 + MGP_C57BL6NJ_P0055186 Tas2r134 protein_coding protein_coding MGP_C57BL6NJ_T0054944.1 MGP_C57BL6NJ_G0026102.1 mouse_genomes_project 2 36705368 36706361 - MGP_C57BL6NJ_P0054944 Olfr358 protein_coding protein_coding MGP_C57BL6NJ_T0103029.1 MGP_C57BL6NJ_G0040823.1 mouse_genomes_project 2 91821556 91822478 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013968.1 MGP_C57BL6NJ_G0012013.1 mouse_genomes_project 2 91124307 91125769 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059917.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179716857 179737746 - MGP_C57BL6NJ_P0059917 Sall4 protein_coding protein_coding MGP_C57BL6NJ_T0059918.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179716857 179737746 - MGP_C57BL6NJ_P0059918 Sall4 protein_coding protein_coding MGP_C57BL6NJ_T0059919.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179716857 179737574 - MGP_C57BL6NJ_P0059919 Sall4 protein_coding protein_coding MGP_C57BL6NJ_T0059920.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179723426 179724455 - MGP_C57BL6NJ_P0059920 Sall4 protein_coding protein_coding MGP_C57BL6NJ_T0059921.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179724692 179735791 - MGP_C57BL6NJ_P0059921 Sall4 protein_coding protein_coding MGP_C57BL6NJ_T0059922.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179725125 179738488 - Sall4 protein_coding processed_transcript MGP_C57BL6NJ_T0059923.1 MGP_C57BL6NJ_G0027352.1 mouse_genomes_project 2 179725264 179737662 - Sall4 protein_coding processed_transcript MGP_C57BL6NJ_T0014133.1 MGP_C57BL6NJ_G0012178.1 mouse_genomes_project 2 155994348 155995324 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060306.1 MGP_C57BL6NJ_G0027444.1 mouse_genomes_project 2 193405823 193500279 - MGP_C57BL6NJ_P0060306 Zbtb46 protein_coding protein_coding MGP_C57BL6NJ_T0060307.1 MGP_C57BL6NJ_G0027444.1 mouse_genomes_project 2 193408947 193450575 - MGP_C57BL6NJ_P0060307 Zbtb46 protein_coding protein_coding MGP_C57BL6NJ_T0060308.1 MGP_C57BL6NJ_G0027444.1 mouse_genomes_project 2 193431805 193500279 - MGP_C57BL6NJ_P0060308 Zbtb46 protein_coding protein_coding MGP_C57BL6NJ_T0060309.1 MGP_C57BL6NJ_G0027444.1 mouse_genomes_project 2 193447740 193500279 - Zbtb46 protein_coding retained_intron MGP_C57BL6NJ_T0060310.1 MGP_C57BL6NJ_G0027444.1 mouse_genomes_project 2 193450414 193500232 - MGP_C57BL6NJ_P0060310 Zbtb46 protein_coding protein_coding MGP_C57BL6NJ_T0055706.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73807043 73812911 + MGP_C57BL6NJ_P0055706 Dlx1 protein_coding protein_coding MGP_C57BL6NJ_T0055707.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73807613 73808996 + MGP_C57BL6NJ_P0055707 Dlx1 protein_coding protein_coding MGP_C57BL6NJ_T0055708.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73808031 73809162 + MGP_C57BL6NJ_P0055708 Dlx1 protein_coding protein_coding MGP_C57BL6NJ_T0055709.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73808783 73811450 + MGP_C57BL6NJ_P0055709 Dlx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055710.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73808877 73812912 + Dlx1 protein_coding retained_intron MGP_C57BL6NJ_T0055711.1 MGP_C57BL6NJ_G0026243.1 mouse_genomes_project 2 73809710 73811620 + Dlx1 protein_coding retained_intron MGP_C57BL6NJ_T0013886.1 MGP_C57BL6NJ_G0011931.1 mouse_genomes_project 2 61318383 61318777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055282.1 MGP_C57BL6NJ_G0026167.1 mouse_genomes_project 2 59676884 59815157 - Acvr1 protein_coding processed_transcript MGP_C57BL6NJ_T0055283.1 MGP_C57BL6NJ_G0026167.1 mouse_genomes_project 2 59741178 59827346 - MGP_C57BL6NJ_P0055283 Acvr1 protein_coding protein_coding MGP_C57BL6NJ_T0055284.1 MGP_C57BL6NJ_G0026167.1 mouse_genomes_project 2 59741187 59866275 - MGP_C57BL6NJ_P0055284 Acvr1 protein_coding protein_coding MGP_C57BL6NJ_T0055286.1 MGP_C57BL6NJ_G0026167.1 mouse_genomes_project 2 59773621 59837579 - MGP_C57BL6NJ_P0055286 Acvr1 protein_coding protein_coding MGP_C57BL6NJ_T0053998.1 MGP_C57BL6NJ_G0025941.1 mouse_genomes_project 2 27465217 27465611 + MGP_C57BL6NJ_P0053998 protein_coding protein_coding MGP_C57BL6NJ_T0013803.1 MGP_C57BL6NJ_G0011848.1 mouse_genomes_project 2 30955744 30956557 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007501.1 MGP_C57BL6NJ_G0006149.1 mouse_genomes_project 2 140329804 140392259 + AU019990 lincRNA lincRNA MGP_C57BL6NJ_T0007502.1 MGP_C57BL6NJ_G0006149.1 mouse_genomes_project 2 140329804 140395235 + AU019990 lincRNA lincRNA MGP_C57BL6NJ_T0018325.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135641011 135886180 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018326.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135751811 135886363 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018327.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135768344 135886389 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018328.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135768520 135886210 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018329.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135799050 135886280 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018330.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135827850 135886226 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0018331.1 MGP_C57BL6NJ_G0015859.1 mouse_genomes_project 2 135827851 135885933 - Gm14005 processed_transcript processed_transcript MGP_C57BL6NJ_T0058748.1 MGP_C57BL6NJ_G0027082.1 mouse_genomes_project 2 161515581 161520034 - MGP_C57BL6NJ_P0058748 Sox12 protein_coding protein_coding MGP_C57BL6NJ_T0058749.1 MGP_C57BL6NJ_G0027082.1 mouse_genomes_project 2 161515584 161520017 - MGP_C57BL6NJ_P0058749 Sox12 protein_coding protein_coding MGP_C57BL6NJ_T0018202.1 MGP_C57BL6NJ_G0015790.1 mouse_genomes_project 2 16881999 16903462 - Gm20539 processed_transcript processed_transcript MGP_C57BL6NJ_T0056269.1 MGP_C57BL6NJ_G0026437.1 mouse_genomes_project 2 91647125 91648067 - MGP_C57BL6NJ_P0056269 Olfr1133 protein_coding protein_coding MGP_C57BL6NJ_T0014214.1 MGP_C57BL6NJ_G0012259.1 mouse_genomes_project 2 193298123 193298911 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057018.1 MGP_C57BL6NJ_G0026653.1 mouse_genomes_project 2 111602164 111659456 + MGP_C57BL6NJ_P0057018 Immp1l protein_coding protein_coding MGP_C57BL6NJ_T0007471.1 MGP_C57BL6NJ_G0006126.1 mouse_genomes_project 2 122544969 122567841 + G630016G05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007472.1 MGP_C57BL6NJ_G0006126.1 mouse_genomes_project 2 122545615 122567840 + G630016G05Rik lincRNA lincRNA MGP_C57BL6NJ_T0099221.1 MGP_C57BL6NJ_G0037285.1 mouse_genomes_project 2 139082252 139082554 - Gm22902 ribozyme ribozyme MGP_C57BL6NJ_T0004265.1 MGP_C57BL6NJ_G0003765.1 mouse_genomes_project 2 152774252 152775851 + 4930444E06Rik antisense antisense MGP_C57BL6NJ_T0056326.1 MGP_C57BL6NJ_G0026489.1 mouse_genomes_project 2 93132257 93161497 + MGP_C57BL6NJ_P0056326 Olfr1204 protein_coding protein_coding MGP_C57BL6NJ_T0057073.1 MGP_C57BL6NJ_G0026667.1 mouse_genomes_project 2 116385372 116387639 - MGP_C57BL6NJ_P0057073 Fibin protein_coding protein_coding MGP_C57BL6NJ_T0053679.1 MGP_C57BL6NJ_G0025879.1 mouse_genomes_project 2 24309673 24312771 + MGP_C57BL6NJ_P0053679 Lcn8 protein_coding protein_coding MGP_C57BL6NJ_T0056051.1 MGP_C57BL6NJ_G0026314.1 mouse_genomes_project 2 87255031 87267080 + MGP_C57BL6NJ_P0056051 Gm13693 protein_coding protein_coding MGP_C57BL6NJ_T0056052.1 MGP_C57BL6NJ_G0026314.1 mouse_genomes_project 2 87265292 87266079 + MGP_C57BL6NJ_P0056052 Gm13693 protein_coding protein_coding MGP_C57BL6NJ_T0004092.1 MGP_C57BL6NJ_G0003643.1 mouse_genomes_project 2 29579735 29581358 + Gm16323 antisense antisense MGP_C57BL6NJ_T0013843.1 MGP_C57BL6NJ_G0011888.1 mouse_genomes_project 2 46085033 46085446 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010705.1 MGP_C57BL6NJ_G0008790.1 mouse_genomes_project 2 167412916 167413003 - Gm23134 miRNA miRNA MGP_C57BL6NJ_T0057226.1 MGP_C57BL6NJ_G0026732.1 mouse_genomes_project 2 124765216 124780474 + MGP_C57BL6NJ_P0057226 Thbs1 protein_coding protein_coding MGP_C57BL6NJ_T0057227.1 MGP_C57BL6NJ_G0026732.1 mouse_genomes_project 2 124776280 124777105 + Thbs1 protein_coding processed_transcript MGP_C57BL6NJ_T0057885.1 MGP_C57BL6NJ_G0026867.1 mouse_genomes_project 2 134260974 134303544 - MGP_C57BL6NJ_P0057885 Sppl2a protein_coding protein_coding MGP_C57BL6NJ_T0057886.1 MGP_C57BL6NJ_G0026867.1 mouse_genomes_project 2 134264847 134290628 - MGP_C57BL6NJ_P0057886 Sppl2a protein_coding protein_coding MGP_C57BL6NJ_T0057887.1 MGP_C57BL6NJ_G0026867.1 mouse_genomes_project 2 134285156 134294001 - Sppl2a protein_coding retained_intron MGP_C57BL6NJ_T0055728.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74326561 74617945 + MGP_C57BL6NJ_P0055728 Rapgef4 protein_coding protein_coding MGP_C57BL6NJ_T0055729.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74326568 74383935 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055730.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74326580 74496340 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055731.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74326608 74616847 + MGP_C57BL6NJ_P0055731 Rapgef4 protein_coding protein_coding MGP_C57BL6NJ_T0055732.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74405916 74617943 + MGP_C57BL6NJ_P0055732 Rapgef4 protein_coding protein_coding MGP_C57BL6NJ_T0055733.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74406297 74496516 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055734.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74495749 74554613 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055735.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74495766 74519445 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055736.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74538330 74617943 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055737.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74557150 74566790 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0055738.1 MGP_C57BL6NJ_G0026247.1 mouse_genomes_project 2 74601790 74617126 + Rapgef4 protein_coding processed_transcript MGP_C57BL6NJ_T0052845.1 MGP_C57BL6NJ_G0025735.1 mouse_genomes_project 2 2129077 2149570 - Optn protein_coding processed_transcript MGP_C57BL6NJ_T0052846.1 MGP_C57BL6NJ_G0025735.1 mouse_genomes_project 2 2129077 2179910 - MGP_C57BL6NJ_P0052846 Optn protein_coding protein_coding MGP_C57BL6NJ_T0052847.1 MGP_C57BL6NJ_G0025735.1 mouse_genomes_project 2 2129079 2179803 - MGP_C57BL6NJ_P0052847 Optn protein_coding protein_coding MGP_C57BL6NJ_T0052848.1 MGP_C57BL6NJ_G0025735.1 mouse_genomes_project 2 2129736 2150864 - Optn protein_coding processed_transcript MGP_C57BL6NJ_T0052849.1 MGP_C57BL6NJ_G0025735.1 mouse_genomes_project 2 2162667 2179916 - Optn protein_coding processed_transcript MGP_C57BL6NJ_T0013809.1 MGP_C57BL6NJ_G0011854.1 mouse_genomes_project 2 33956448 33956808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004119.1 MGP_C57BL6NJ_G0003666.1 mouse_genomes_project 2 38851912 38853458 - Gm13496 antisense antisense MGP_C57BL6NJ_T0007308.1 MGP_C57BL6NJ_G0005995.1 mouse_genomes_project 2 7083851 7094330 - Gm13218 lincRNA lincRNA MGP_C57BL6NJ_T0060248.1 MGP_C57BL6NJ_G0027434.1 mouse_genomes_project 2 193190916 193199971 - MGP_C57BL6NJ_P0060248 Ptk6 protein_coding protein_coding MGP_C57BL6NJ_T0055187.1 MGP_C57BL6NJ_G0026146.1 mouse_genomes_project 2 52725222 52737204 - MGP_C57BL6NJ_P0055187 Rbm43 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055188.1 MGP_C57BL6NJ_G0026146.1 mouse_genomes_project 2 52726162 52727801 - Rbm43 protein_coding processed_transcript MGP_C57BL6NJ_T0055189.1 MGP_C57BL6NJ_G0026146.1 mouse_genomes_project 2 52726427 52734110 - Rbm43 protein_coding processed_transcript MGP_C57BL6NJ_T0055190.1 MGP_C57BL6NJ_G0026146.1 mouse_genomes_project 2 52726646 52737040 - Rbm43 protein_coding processed_transcript MGP_C57BL6NJ_T0058173.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138683670 138687127 - MGP_C57BL6NJ_P0058173 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058174.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138683677 138685496 - Gfra4 protein_coding retained_intron MGP_C57BL6NJ_T0058175.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138683678 138685550 - Gfra4 protein_coding retained_intron MGP_C57BL6NJ_T0058176.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138684214 138686721 - MGP_C57BL6NJ_P0058176 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058177.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138684246 138686721 - MGP_C57BL6NJ_P0058177 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058178.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138684246 138687127 - MGP_C57BL6NJ_P0058178 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058179.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138685270 138687127 - MGP_C57BL6NJ_P0058179 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058180.1 MGP_C57BL6NJ_G0026939.1 mouse_genomes_project 2 138685270 138686721 - MGP_C57BL6NJ_P0058180 Gfra4 protein_coding protein_coding MGP_C57BL6NJ_T0058750.1 MGP_C57BL6NJ_G0027083.1 mouse_genomes_project 2 161534721 161539597 - MGP_C57BL6NJ_P0058750 Zcchc3 protein_coding protein_coding MGP_C57BL6NJ_T0053509.1 MGP_C57BL6NJ_G0025849.1 mouse_genomes_project 2 23854862 23855716 + MGP_C57BL6NJ_P0053509 Tmem203 protein_coding protein_coding MGP_C57BL6NJ_T0001153.1 MGP_C57BL6NJ_G0001059.1 mouse_genomes_project 2 4240929 4252020 + TEC TEC MGP_C57BL6NJ_T0013975.1 MGP_C57BL6NJ_G0012020.1 mouse_genomes_project 2 91370879 91372041 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053219.1 MGP_C57BL6NJ_G0025797.1 mouse_genomes_project 2 17573445 17585625 + Msrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0053220.1 MGP_C57BL6NJ_G0025797.1 mouse_genomes_project 2 17573641 17598450 + MGP_C57BL6NJ_P0053220 Msrb2 protein_coding protein_coding MGP_C57BL6NJ_T0053221.1 MGP_C57BL6NJ_G0025797.1 mouse_genomes_project 2 17573673 17596794 + Msrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0053222.1 MGP_C57BL6NJ_G0025797.1 mouse_genomes_project 2 17573846 17597738 + Msrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0100175.1 MGP_C57BL6NJ_G0038221.1 mouse_genomes_project 2 16230693 16230798 + Gm25147 snRNA snRNA MGP_C57BL6NJ_T0059880.1 MGP_C57BL6NJ_G0027346.1 mouse_genomes_project 2 179087822 179143059 - MGP_C57BL6NJ_P0059880 Gm20716 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014148.1 MGP_C57BL6NJ_G0012193.1 mouse_genomes_project 2 159990438 159991221 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007440.1 MGP_C57BL6NJ_G0006100.1 mouse_genomes_project 2 99539406 99541131 - Gm13793 lincRNA lincRNA MGP_C57BL6NJ_T0056398.1 MGP_C57BL6NJ_G0026541.1 mouse_genomes_project 2 94428798 94429707 - MGP_C57BL6NJ_P0056398 Olfr140 protein_coding protein_coding MGP_C57BL6NJ_T0056399.1 MGP_C57BL6NJ_G0026541.1 mouse_genomes_project 2 94428798 94441851 - MGP_C57BL6NJ_P0056399 Olfr140 protein_coding protein_coding MGP_C57BL6NJ_T0053921.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25841968 25848528 - Slc2a6 protein_coding processed_transcript MGP_C57BL6NJ_T0053922.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25841968 25848552 - Slc2a6 protein_coding processed_transcript MGP_C57BL6NJ_T0053923.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25841968 25848515 - MGP_C57BL6NJ_P0053923 Slc2a6 protein_coding protein_coding MGP_C57BL6NJ_T0053924.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25841968 25848604 - MGP_C57BL6NJ_P0053924 Slc2a6 protein_coding protein_coding MGP_C57BL6NJ_T0053925.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25844673 25846597 - Slc2a6 protein_coding processed_transcript MGP_C57BL6NJ_T0053926.1 MGP_C57BL6NJ_G0025924.1 mouse_genomes_project 2 25846693 25848597 - MGP_C57BL6NJ_P0053926 Slc2a6 protein_coding protein_coding MGP_C57BL6NJ_T0053850.1 MGP_C57BL6NJ_G0025910.1 mouse_genomes_project 2 25353498 25364551 - Agpat2 protein_coding processed_transcript MGP_C57BL6NJ_T0053851.1 MGP_C57BL6NJ_G0025910.1 mouse_genomes_project 2 25353498 25364672 - MGP_C57BL6NJ_P0053851 Agpat2 protein_coding protein_coding MGP_C57BL6NJ_T0053852.1 MGP_C57BL6NJ_G0025910.1 mouse_genomes_project 2 25354944 25364757 - Agpat2 protein_coding processed_transcript MGP_C57BL6NJ_T0053853.1 MGP_C57BL6NJ_G0025910.1 mouse_genomes_project 2 25356559 25364056 - Agpat2 protein_coding processed_transcript MGP_C57BL6NJ_T0053854.1 MGP_C57BL6NJ_G0025910.1 mouse_genomes_project 2 25356882 25364266 - MGP_C57BL6NJ_P0053854 Agpat2 protein_coding protein_coding MGP_C57BL6NJ_T0058704.1 MGP_C57BL6NJ_G0027067.1 mouse_genomes_project 2 160690159 160721468 - MGP_C57BL6NJ_P0058704 Rad21l protein_coding protein_coding MGP_C57BL6NJ_T0058705.1 MGP_C57BL6NJ_G0027067.1 mouse_genomes_project 2 160690159 160721468 - MGP_C57BL6NJ_P0058705 Rad21l protein_coding protein_coding MGP_C57BL6NJ_T0013901.1 MGP_C57BL6NJ_G0011946.1 mouse_genomes_project 2 67010881 67012073 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054653.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185317 32193775 + MGP_C57BL6NJ_P0054653 Tor2a protein_coding protein_coding MGP_C57BL6NJ_T0054654.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185328 32193470 + MGP_C57BL6NJ_P0054654 Tor2a protein_coding protein_coding MGP_C57BL6NJ_T0054655.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185338 32193261 + MGP_C57BL6NJ_P0054655 Tor2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054656.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185343 32193775 + MGP_C57BL6NJ_P0054656 Tor2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054657.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185359 32193773 + Tor2a protein_coding retained_intron MGP_C57BL6NJ_T0054658.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185374 32186067 + Tor2a protein_coding processed_transcript MGP_C57BL6NJ_T0054659.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32185402 32193125 + MGP_C57BL6NJ_P0054659 Tor2a protein_coding protein_coding MGP_C57BL6NJ_T0054660.1 MGP_C57BL6NJ_G0026040.1 mouse_genomes_project 2 32188378 32193320 + Tor2a protein_coding retained_intron MGP_C57BL6NJ_T0007554.1 MGP_C57BL6NJ_G0006194.1 mouse_genomes_project 2 174944727 174955976 + Gm14317 lincRNA lincRNA MGP_C57BL6NJ_T0010648.1 MGP_C57BL6NJ_G0008733.1 mouse_genomes_project 2 67085640 67085745 - Mir6337 miRNA miRNA MGP_C57BL6NJ_T0059596.1 MGP_C57BL6NJ_G0027284.1 mouse_genomes_project 2 175022362 175027314 + MGP_C57BL6NJ_P0059596 Wfdc6b protein_coding protein_coding MGP_C57BL6NJ_T0102615.1 MGP_C57BL6NJ_G0040420.1 mouse_genomes_project 2 193402323 193405648 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102616.1 MGP_C57BL6NJ_G0040420.1 mouse_genomes_project 2 193402484 193405261 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0057718.1 MGP_C57BL6NJ_G0026825.1 mouse_genomes_project 2 129093100 129163588 - MGP_C57BL6NJ_P0057718 Spg11 protein_coding protein_coding MGP_C57BL6NJ_T0057719.1 MGP_C57BL6NJ_G0026825.1 mouse_genomes_project 2 129137470 129163498 - Spg11 protein_coding processed_transcript MGP_C57BL6NJ_T0057720.1 MGP_C57BL6NJ_G0026825.1 mouse_genomes_project 2 129151652 129163577 - Spg11 protein_coding processed_transcript MGP_C57BL6NJ_T0059855.1 MGP_C57BL6NJ_G0027337.1 mouse_genomes_project 2 178288124 178311493 + MGP_C57BL6NJ_P0059855 Rnf114 protein_coding protein_coding MGP_C57BL6NJ_T0059856.1 MGP_C57BL6NJ_G0027337.1 mouse_genomes_project 2 178298548 178311500 + MGP_C57BL6NJ_P0059856 Rnf114 protein_coding protein_coding MGP_C57BL6NJ_T0059857.1 MGP_C57BL6NJ_G0027337.1 mouse_genomes_project 2 178298905 178311491 + MGP_C57BL6NJ_P0059857 Rnf114 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055555.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71220733 71234249 - MGP_C57BL6NJ_P0055555 Spc25 protein_coding protein_coding MGP_C57BL6NJ_T0055556.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71221259 71234174 - MGP_C57BL6NJ_P0055556 Spc25 protein_coding protein_coding MGP_C57BL6NJ_T0055557.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71223985 71233222 - MGP_C57BL6NJ_P0055557 Spc25 protein_coding protein_coding MGP_C57BL6NJ_T0055558.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71224028 71234272 - MGP_C57BL6NJ_P0055558 Spc25 protein_coding protein_coding MGP_C57BL6NJ_T0055559.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71226901 71234215 - Spc25 protein_coding processed_transcript MGP_C57BL6NJ_T0055560.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71228177 71233307 - Spc25 protein_coding processed_transcript MGP_C57BL6NJ_T0055561.1 MGP_C57BL6NJ_G0026214.1 mouse_genomes_project 2 71233729 71234271 - Spc25 protein_coding processed_transcript MGP_C57BL6NJ_T0010644.1 MGP_C57BL6NJ_G0008729.1 mouse_genomes_project 2 45407219 45407297 - Mir5129 miRNA miRNA MGP_C57BL6NJ_T0058763.1 MGP_C57BL6NJ_G0027094.1 mouse_genomes_project 2 161727365 161733574 - Defb45 protein_coding processed_transcript MGP_C57BL6NJ_T0058764.1 MGP_C57BL6NJ_G0027094.1 mouse_genomes_project 2 161727365 161730657 - MGP_C57BL6NJ_P0058764 Defb45 protein_coding protein_coding MGP_C57BL6NJ_T0101501.1 MGP_C57BL6NJ_G0039547.1 mouse_genomes_project 2 96192777 96192888 + Snord67 snoRNA snoRNA MGP_C57BL6NJ_T0004194.1 MGP_C57BL6NJ_G0003718.1 mouse_genomes_project 2 110754476 110767756 - Wt1os antisense antisense MGP_C57BL6NJ_T0004195.1 MGP_C57BL6NJ_G0003718.1 mouse_genomes_project 2 110754783 110807710 - Wt1os antisense antisense MGP_C57BL6NJ_T0004196.1 MGP_C57BL6NJ_G0003718.1 mouse_genomes_project 2 110755833 110756046 - Wt1os antisense antisense MGP_C57BL6NJ_T0004197.1 MGP_C57BL6NJ_G0003718.1 mouse_genomes_project 2 110773383 110807603 - Wt1os antisense antisense MGP_C57BL6NJ_T0001195.1 MGP_C57BL6NJ_G0001101.1 mouse_genomes_project 2 34889188 34890809 + TEC TEC MGP_C57BL6NJ_T0057721.1 MGP_C57BL6NJ_G0026826.1 mouse_genomes_project 2 129165297 129236910 - MGP_C57BL6NJ_P0057721 Patl2 protein_coding protein_coding MGP_C57BL6NJ_T0100224.1 MGP_C57BL6NJ_G0038270.1 mouse_genomes_project 2 148724516 148724623 - Gm23846 snRNA snRNA MGP_C57BL6NJ_T0058706.1 MGP_C57BL6NJ_G0027068.1 mouse_genomes_project 2 160760757 160766056 + MGP_C57BL6NJ_P0058706 Tmem74b protein_coding protein_coding MGP_C57BL6NJ_T0058707.1 MGP_C57BL6NJ_G0027068.1 mouse_genomes_project 2 160761060 160770887 + MGP_C57BL6NJ_P0058707 Tmem74b protein_coding protein_coding MGP_C57BL6NJ_T0014021.1 MGP_C57BL6NJ_G0012066.1 mouse_genomes_project 2 109351512 109352244 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013925.1 MGP_C57BL6NJ_G0011970.1 mouse_genomes_project 2 75625695 75626040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054942.1 MGP_C57BL6NJ_G0026100.1 mouse_genomes_project 2 36631484 36632432 + MGP_C57BL6NJ_P0054942 Olfr356 protein_coding protein_coding MGP_C57BL6NJ_T0014062.1 MGP_C57BL6NJ_G0012107.1 mouse_genomes_project 2 125297264 125297750 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010625.1 MGP_C57BL6NJ_G0008710.1 mouse_genomes_project 2 29528820 29528916 + miRNA miRNA MGP_C57BL6NJ_T0014071.1 MGP_C57BL6NJ_G0012116.1 mouse_genomes_project 2 128455721 128456107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053895.1 MGP_C57BL6NJ_G0025919.1 mouse_genomes_project 2 25733725 25747403 - MGP_C57BL6NJ_P0053895 Surf4 protein_coding protein_coding MGP_C57BL6NJ_T0053896.1 MGP_C57BL6NJ_G0025919.1 mouse_genomes_project 2 25735647 25747069 - MGP_C57BL6NJ_P0053896 Surf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053897.1 MGP_C57BL6NJ_G0025919.1 mouse_genomes_project 2 25738655 25747256 - MGP_C57BL6NJ_P0053897 Surf4 protein_coding protein_coding MGP_C57BL6NJ_T0054352.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30194884 30200941 + MGP_C57BL6NJ_P0054352 Tor1b protein_coding protein_coding MGP_C57BL6NJ_T0054353.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30194904 30200937 + Tor1b protein_coding retained_intron MGP_C57BL6NJ_T0054354.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30194916 30198420 + MGP_C57BL6NJ_P0054354 Tor1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054355.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30195097 30198911 + Tor1b protein_coding retained_intron MGP_C57BL6NJ_T0054356.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30195112 30200938 + MGP_C57BL6NJ_P0054356 Tor1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054357.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30195677 30198799 + MGP_C57BL6NJ_P0054357 Tor1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054358.1 MGP_C57BL6NJ_G0025996.1 mouse_genomes_project 2 30197178 30199038 + Tor1b protein_coding processed_transcript MGP_C57BL6NJ_T0014037.1 MGP_C57BL6NJ_G0012082.1 mouse_genomes_project 2 112805243 112805741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011782.1 MGP_C57BL6NJ_G0009867.1 mouse_genomes_project 2 168444273 168444359 + Gm24379 misc_RNA misc_RNA MGP_C57BL6NJ_T0057682.1 MGP_C57BL6NJ_G0026818.1 mouse_genomes_project 2 128469393 128483767 - MGP_C57BL6NJ_P0057682 protein_coding protein_coding MGP_C57BL6NJ_T0010575.1 MGP_C57BL6NJ_G0008660.1 mouse_genomes_project 2 8058990 8059071 + Mir466b-3 miRNA miRNA MGP_C57BL6NJ_T0053590.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24063515 24083353 + MGP_C57BL6NJ_P0053590 Abca2 protein_coding protein_coding MGP_C57BL6NJ_T0053591.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24076120 24077730 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0053592.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24077760 24078626 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0053593.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24079974 24081678 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0053594.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24080477 24081880 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0053595.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24080634 24081355 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0053596.1 MGP_C57BL6NJ_G0025863.1 mouse_genomes_project 2 24080655 24081289 + Abca2 protein_coding processed_transcript MGP_C57BL6NJ_T0007503.1 MGP_C57BL6NJ_G0006150.1 mouse_genomes_project 2 140747517 140748881 + Gm14102 lincRNA lincRNA MGP_C57BL6NJ_T0059859.1 MGP_C57BL6NJ_G0027339.1 mouse_genomes_project 2 178417815 178447977 - MGP_C57BL6NJ_P0059859 Ube2v1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059860.1 MGP_C57BL6NJ_G0027339.1 mouse_genomes_project 2 178419220 178447995 - MGP_C57BL6NJ_P0059860 Ube2v1 protein_coding protein_coding MGP_C57BL6NJ_T0059861.1 MGP_C57BL6NJ_G0027339.1 mouse_genomes_project 2 178426500 178447998 - Ube2v1 protein_coding retained_intron MGP_C57BL6NJ_T0056394.1 MGP_C57BL6NJ_G0026537.1 mouse_genomes_project 2 94356736 94357522 + MGP_C57BL6NJ_P0056394 Olfr1262 protein_coding protein_coding MGP_C57BL6NJ_T0010653.1 MGP_C57BL6NJ_G0008738.1 mouse_genomes_project 2 77276923 77276991 + Mir10b miRNA miRNA MGP_C57BL6NJ_T0014159.1 MGP_C57BL6NJ_G0012204.1 mouse_genomes_project 2 164700939 164701568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056345.1 MGP_C57BL6NJ_G0026505.1 mouse_genomes_project 2 93484860 93485796 - MGP_C57BL6NJ_P0056345 Olfr1224-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0052945.1 MGP_C57BL6NJ_G0025753.1 mouse_genomes_project 2 7623612 7634839 + Kin protein_coding processed_transcript MGP_C57BL6NJ_T0052946.1 MGP_C57BL6NJ_G0025753.1 mouse_genomes_project 2 7623643 7635826 + MGP_C57BL6NJ_P0052946 Kin protein_coding protein_coding MGP_C57BL6NJ_T0052947.1 MGP_C57BL6NJ_G0025753.1 mouse_genomes_project 2 7633316 7635199 + Kin protein_coding processed_transcript MGP_C57BL6NJ_T0055780.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75899166 76001480 - MGP_C57BL6NJ_P0055780 Wipf1 protein_coding protein_coding MGP_C57BL6NJ_T0055781.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75899595 75956464 - MGP_C57BL6NJ_P0055781 Wipf1 protein_coding protein_coding MGP_C57BL6NJ_T0055782.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75901703 75923651 - MGP_C57BL6NJ_P0055782 Wipf1 protein_coding protein_coding MGP_C57BL6NJ_T0055783.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75906958 75957170 - MGP_C57BL6NJ_P0055783 Wipf1 protein_coding protein_coding MGP_C57BL6NJ_T0055784.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75913940 75922382 - MGP_C57BL6NJ_P0055784 Wipf1 protein_coding protein_coding MGP_C57BL6NJ_T0055785.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75914000 76001225 - Wipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0055786.1 MGP_C57BL6NJ_G0026257.1 mouse_genomes_project 2 75917687 76001128 - Wipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0052895.1 MGP_C57BL6NJ_G0025746.1 mouse_genomes_project 2 3585585 3713399 + MGP_C57BL6NJ_P0052895 Usp6nl protein_coding protein_coding MGP_C57BL6NJ_T0052896.1 MGP_C57BL6NJ_G0025746.1 mouse_genomes_project 2 3585690 3688021 + Usp6nl protein_coding processed_transcript MGP_C57BL6NJ_T0052897.1 MGP_C57BL6NJ_G0025746.1 mouse_genomes_project 2 3615569 3710503 + MGP_C57BL6NJ_P0052897 Usp6nl protein_coding protein_coding MGP_C57BL6NJ_T0052898.1 MGP_C57BL6NJ_G0025746.1 mouse_genomes_project 2 3687930 3691844 + Usp6nl protein_coding processed_transcript MGP_C57BL6NJ_T0056220.1 MGP_C57BL6NJ_G0026396.1 mouse_genomes_project 2 90512416 90513349 - MGP_C57BL6NJ_P0056220 Olfr1086 protein_coding protein_coding MGP_C57BL6NJ_T0053226.1 MGP_C57BL6NJ_G0025800.1 mouse_genomes_project 2 17877190 17880022 + MGP_C57BL6NJ_P0053226 Otud1 protein_coding protein_coding MGP_C57BL6NJ_T0058757.1 MGP_C57BL6NJ_G0027088.1 mouse_genomes_project 2 161639033 161642880 - MGP_C57BL6NJ_P0058757 Defb26 protein_coding protein_coding MGP_C57BL6NJ_T0056341.1 MGP_C57BL6NJ_G0026502.1 mouse_genomes_project 2 93439708 93440644 - MGP_C57BL6NJ_P0056341 Olfr1221 protein_coding protein_coding MGP_C57BL6NJ_T0001178.1 MGP_C57BL6NJ_G0001084.1 mouse_genomes_project 2 12019484 12019625 - TEC TEC MGP_C57BL6NJ_T0053223.1 MGP_C57BL6NJ_G0025798.1 mouse_genomes_project 2 17654060 17655899 + MGP_C57BL6NJ_P0053223 Ptf1a protein_coding protein_coding MGP_C57BL6NJ_T0059144.1 MGP_C57BL6NJ_G0027181.1 mouse_genomes_project 2 165679385 165702748 - MGP_C57BL6NJ_P0059144 Rbm12 protein_coding protein_coding MGP_C57BL6NJ_T0059145.1 MGP_C57BL6NJ_G0027181.1 mouse_genomes_project 2 165679385 165702748 - MGP_C57BL6NJ_P0059145 Rbm12 protein_coding protein_coding MGP_C57BL6NJ_T0059146.1 MGP_C57BL6NJ_G0027181.1 mouse_genomes_project 2 165684912 165702708 - MGP_C57BL6NJ_P0059146 Rbm12 protein_coding protein_coding MGP_C57BL6NJ_T0059147.1 MGP_C57BL6NJ_G0027181.1 mouse_genomes_project 2 165685348 165702770 - MGP_C57BL6NJ_P0059147 Rbm12 protein_coding protein_coding MGP_C57BL6NJ_T0059148.1 MGP_C57BL6NJ_G0027181.1 mouse_genomes_project 2 165685377 165702753 - MGP_C57BL6NJ_P0059148 Rbm12 protein_coding protein_coding MGP_C57BL6NJ_T0053979.1 MGP_C57BL6NJ_G0025936.1 mouse_genomes_project 2 27115898 27139281 + Olfm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053980.1 MGP_C57BL6NJ_G0025936.1 mouse_genomes_project 2 27115898 27158014 + MGP_C57BL6NJ_P0053980 Olfm1 protein_coding protein_coding MGP_C57BL6NJ_T0053981.1 MGP_C57BL6NJ_G0025936.1 mouse_genomes_project 2 27115999 27158288 + MGP_C57BL6NJ_P0053981 Olfm1 protein_coding protein_coding MGP_C57BL6NJ_T0053982.1 MGP_C57BL6NJ_G0025936.1 mouse_genomes_project 2 27128444 27139281 + MGP_C57BL6NJ_P0053982 Olfm1 protein_coding protein_coding MGP_C57BL6NJ_T0053983.1 MGP_C57BL6NJ_G0025936.1 mouse_genomes_project 2 27128444 27158288 + MGP_C57BL6NJ_P0053983 Olfm1 protein_coding protein_coding MGP_C57BL6NJ_T0004200.1 MGP_C57BL6NJ_G0003720.1 mouse_genomes_project 2 111418788 111419888 + Gm13954 antisense antisense MGP_C57BL6NJ_T0058824.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162346574 162409000 + Tm9sf4 protein_coding processed_transcript MGP_C57BL6NJ_T0058825.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162346574 162414604 + MGP_C57BL6NJ_P0058825 Tm9sf4 protein_coding protein_coding MGP_C57BL6NJ_T0058826.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162346812 162388613 + Tm9sf4 protein_coding processed_transcript MGP_C57BL6NJ_T0058827.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162346819 162393088 + Tm9sf4 protein_coding retained_intron MGP_C57BL6NJ_T0058828.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162389951 162391740 + Tm9sf4 protein_coding retained_intron MGP_C57BL6NJ_T0058829.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162390478 162404126 + Tm9sf4 protein_coding processed_transcript MGP_C57BL6NJ_T0058830.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162393893 162408040 + Tm9sf4 protein_coding processed_transcript MGP_C57BL6NJ_T0058831.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162395082 162402280 + Tm9sf4 protein_coding processed_transcript MGP_C57BL6NJ_T0058832.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162403612 162414604 + Tm9sf4 protein_coding retained_intron MGP_C57BL6NJ_T0058833.1 MGP_C57BL6NJ_G0027112.1 mouse_genomes_project 2 162406272 162414604 + Tm9sf4 protein_coding retained_intron MGP_C57BL6NJ_T0055451.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66583248 66587616 - Grb14 protein_coding processed_transcript MGP_C57BL6NJ_T0055452.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66583248 66589912 - MGP_C57BL6NJ_P0055452 Grb14 protein_coding protein_coding MGP_C57BL6NJ_T0055453.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66583248 66714672 - MGP_C57BL6NJ_P0055453 Grb14 protein_coding protein_coding MGP_C57BL6NJ_T0055454.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66583248 66589837 - MGP_C57BL6NJ_P0055454 Grb14 protein_coding protein_coding MGP_C57BL6NJ_T0055455.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66601121 66606829 - Grb14 protein_coding processed_transcript MGP_C57BL6NJ_T0055456.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66602587 66661755 - MGP_C57BL6NJ_P0055456 Grb14 protein_coding protein_coding MGP_C57BL6NJ_T0055457.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66608677 66661732 - Grb14 protein_coding processed_transcript MGP_C57BL6NJ_T0055458.1 MGP_C57BL6NJ_G0026194.1 mouse_genomes_project 2 66714557 66717982 - Grb14 protein_coding processed_transcript MGP_C57BL6NJ_T0101550.1 MGP_C57BL6NJ_G0039596.1 mouse_genomes_project 2 179256402 179256539 + Gm22704 snoRNA snoRNA MGP_C57BL6NJ_T0058910.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163833507 163945451 + MGP_C57BL6NJ_P0058910 Cbfa2t2 protein_coding protein_coding MGP_C57BL6NJ_T0058911.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163833510 163932923 + MGP_C57BL6NJ_P0058911 Cbfa2t2 protein_coding protein_coding MGP_C57BL6NJ_T0058912.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163833542 163945447 + MGP_C57BL6NJ_P0058912 Cbfa2t2 protein_coding protein_coding MGP_C57BL6NJ_T0058913.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163833561 163924286 + MGP_C57BL6NJ_P0058913 Cbfa2t2 protein_coding protein_coding MGP_C57BL6NJ_T0058914.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163833868 163907319 + MGP_C57BL6NJ_P0058914 Cbfa2t2 protein_coding protein_coding MGP_C57BL6NJ_T0058915.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163922423 163924514 + Cbfa2t2 protein_coding retained_intron MGP_C57BL6NJ_T0058916.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163930493 163937904 + Cbfa2t2 protein_coding retained_intron MGP_C57BL6NJ_T0058917.1 MGP_C57BL6NJ_G0027139.1 mouse_genomes_project 2 163937343 163941062 + Cbfa2t2 protein_coding retained_intron MGP_C57BL6NJ_T0004155.1 MGP_C57BL6NJ_G0003693.1 mouse_genomes_project 2 74604461 74609453 - Rapgef4os3 antisense antisense MGP_C57BL6NJ_T0004225.1 MGP_C57BL6NJ_G0003740.1 mouse_genomes_project 2 134032693 134040623 + Gm27003 antisense antisense MGP_C57BL6NJ_T0013940.1 MGP_C57BL6NJ_G0011985.1 mouse_genomes_project 2 81894014 81894465 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014023.1 MGP_C57BL6NJ_G0012068.1 mouse_genomes_project 2 109379897 109380314 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053486.1 MGP_C57BL6NJ_G0025844.1 mouse_genomes_project 2 23828521 23833788 - MGP_C57BL6NJ_P0053486 Slc34a3 protein_coding protein_coding MGP_C57BL6NJ_T0053487.1 MGP_C57BL6NJ_G0025844.1 mouse_genomes_project 2 23831796 23833658 - Slc34a3 protein_coding processed_transcript MGP_C57BL6NJ_T0053488.1 MGP_C57BL6NJ_G0025844.1 mouse_genomes_project 2 23831842 23833612 - Slc34a3 protein_coding processed_transcript MGP_C57BL6NJ_T0010729.1 MGP_C57BL6NJ_G0008814.1 mouse_genomes_project 2 193644330 193644399 - Mir7006 miRNA miRNA MGP_C57BL6NJ_T0100186.1 MGP_C57BL6NJ_G0038232.1 mouse_genomes_project 2 37004716 37004823 + Gm22306 snRNA snRNA MGP_C57BL6NJ_T0007417.1 MGP_C57BL6NJ_G0006083.1 mouse_genomes_project 2 80605842 80608128 + Gm13661 lincRNA lincRNA MGP_C57BL6NJ_T0058929.1 MGP_C57BL6NJ_G0027143.1 mouse_genomes_project 2 163965415 163975745 - MGP_C57BL6NJ_P0058929 E2f1 protein_coding protein_coding MGP_C57BL6NJ_T0058930.1 MGP_C57BL6NJ_G0027143.1 mouse_genomes_project 2 163965642 163975573 - MGP_C57BL6NJ_P0058930 E2f1 protein_coding protein_coding MGP_C57BL6NJ_T0018190.1 MGP_C57BL6NJ_G0015784.1 mouse_genomes_project 2 1318880 1334005 - Gm13187 processed_transcript processed_transcript MGP_C57BL6NJ_T0018191.1 MGP_C57BL6NJ_G0015784.1 mouse_genomes_project 2 1322444 1334060 - Gm13187 processed_transcript processed_transcript MGP_C57BL6NJ_T0018192.1 MGP_C57BL6NJ_G0015784.1 mouse_genomes_project 2 1333403 1334060 - Gm13187 processed_transcript processed_transcript MGP_C57BL6NJ_T0056179.1 MGP_C57BL6NJ_G0026358.1 mouse_genomes_project 2 89311318 89312254 + MGP_C57BL6NJ_P0056179 Olfr1018 protein_coding protein_coding MGP_C57BL6NJ_T0018225.1 MGP_C57BL6NJ_G0015804.1 mouse_genomes_project 2 30408929 30415753 - D330023K18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018226.1 MGP_C57BL6NJ_G0015804.1 mouse_genomes_project 2 30414102 30415753 - D330023K18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0004342.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193634922 193641559 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004343.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193634927 193637132 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004344.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193634960 193637137 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004345.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193635931 193637416 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004346.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193635974 193638590 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004347.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193636040 193637649 + Uckl1os antisense antisense MGP_C57BL6NJ_T0004348.1 MGP_C57BL6NJ_G0003826.1 mouse_genomes_project 2 193638680 193641610 + Uckl1os antisense antisense MGP_C57BL6NJ_T0056970.1 MGP_C57BL6NJ_G0026646.1 mouse_genomes_project 2 110667048 110674659 - Eif3m protein_coding retained_intron MGP_C57BL6NJ_T0056971.1 MGP_C57BL6NJ_G0026646.1 mouse_genomes_project 2 110667048 110684468 - MGP_C57BL6NJ_P0056971 Eif3m protein_coding protein_coding MGP_C57BL6NJ_T0056972.1 MGP_C57BL6NJ_G0026646.1 mouse_genomes_project 2 110667051 110674211 - MGP_C57BL6NJ_P0056972 Eif3m protein_coding protein_coding MGP_C57BL6NJ_T0056973.1 MGP_C57BL6NJ_G0026646.1 mouse_genomes_project 2 110667081 110684431 - MGP_C57BL6NJ_P0056973 Eif3m protein_coding protein_coding MGP_C57BL6NJ_T0054708.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32439249 32539881 - MGP_C57BL6NJ_P0054708 Garnl3 protein_coding protein_coding MGP_C57BL6NJ_T0054709.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32439399 32584228 - MGP_C57BL6NJ_P0054709 Garnl3 protein_coding protein_coding MGP_C57BL6NJ_T0054710.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32439399 32538996 - MGP_C57BL6NJ_P0054710 Garnl3 protein_coding protein_coding MGP_C57BL6NJ_T0054711.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32457527 32461224 - Garnl3 protein_coding retained_intron MGP_C57BL6NJ_T0054712.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32461823 32558143 - Garnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0054713.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32468024 32487623 - MGP_C57BL6NJ_P0054713 Garnl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054714.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32472121 32480033 - Garnl3 protein_coding retained_intron MGP_C57BL6NJ_T0054715.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32499408 32539428 - Garnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0054716.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32506973 32539185 - Garnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0054717.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32506978 32584442 - MGP_C57BL6NJ_P0054717 Garnl3 protein_coding protein_coding MGP_C57BL6NJ_T0054718.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32506980 32584446 - MGP_C57BL6NJ_P0054718 Garnl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054719.1 MGP_C57BL6NJ_G0026048.1 mouse_genomes_project 2 32507025 32583400 - MGP_C57BL6NJ_P0054719 Garnl3 protein_coding protein_coding MGP_C57BL6NJ_T0010657.1 MGP_C57BL6NJ_G0008742.1 mouse_genomes_project 2 79775524 79775606 - Gm44360 miRNA miRNA MGP_C57BL6NJ_T0010662.1 MGP_C57BL6NJ_G0008747.1 mouse_genomes_project 2 96821660 96821758 + Mir1955 miRNA miRNA MGP_C57BL6NJ_T0101475.1 MGP_C57BL6NJ_G0039521.1 mouse_genomes_project 2 31592363 31592448 + Gm22192 snoRNA snoRNA MGP_C57BL6NJ_T0059949.1 MGP_C57BL6NJ_G0027359.1 mouse_genomes_project 2 181660396 181667814 + MGP_C57BL6NJ_P0059949 Pfdn4 protein_coding protein_coding MGP_C57BL6NJ_T0059950.1 MGP_C57BL6NJ_G0027359.1 mouse_genomes_project 2 181660397 181668027 + MGP_C57BL6NJ_P0059950 Pfdn4 protein_coding protein_coding MGP_C57BL6NJ_T0057931.1 MGP_C57BL6NJ_G0026877.1 mouse_genomes_project 2 134715790 134718008 + MGP_C57BL6NJ_P0057931 Dusp2 protein_coding protein_coding MGP_C57BL6NJ_T0057932.1 MGP_C57BL6NJ_G0026877.1 mouse_genomes_project 2 134716241 134717136 + Dusp2 protein_coding retained_intron MGP_C57BL6NJ_T0101477.1 MGP_C57BL6NJ_G0039523.1 mouse_genomes_project 2 32098450 32098587 + Gm26236 snoRNA snoRNA MGP_C57BL6NJ_T0056161.1 MGP_C57BL6NJ_G0026341.1 mouse_genomes_project 2 88826324 88827254 - MGP_C57BL6NJ_P0056161 Olfr992 protein_coding protein_coding MGP_C57BL6NJ_T0014069.1 MGP_C57BL6NJ_G0012114.1 mouse_genomes_project 2 128365371 128365618 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060132.1 MGP_C57BL6NJ_G0027411.1 mouse_genomes_project 2 192160787 192161856 + MGP_C57BL6NJ_P0060132 Rps21 protein_coding protein_coding MGP_C57BL6NJ_T0060133.1 MGP_C57BL6NJ_G0027411.1 mouse_genomes_project 2 192160789 192161853 + Rps21 protein_coding retained_intron MGP_C57BL6NJ_T0060134.1 MGP_C57BL6NJ_G0027411.1 mouse_genomes_project 2 192160828 192161405 + Rps21 protein_coding retained_intron MGP_C57BL6NJ_T0060135.1 MGP_C57BL6NJ_G0027411.1 mouse_genomes_project 2 192160828 192161554 + Rps21 protein_coding retained_intron MGP_C57BL6NJ_T0058586.1 MGP_C57BL6NJ_G0027031.1 mouse_genomes_project 2 157490071 157506138 + MGP_C57BL6NJ_P0058586 Gzf1 protein_coding protein_coding MGP_C57BL6NJ_T0058587.1 MGP_C57BL6NJ_G0027031.1 mouse_genomes_project 2 157490259 157493098 + MGP_C57BL6NJ_P0058587 Gzf1 protein_coding protein_coding MGP_C57BL6NJ_T0058588.1 MGP_C57BL6NJ_G0027031.1 mouse_genomes_project 2 157493660 157503404 + Gzf1 protein_coding processed_transcript MGP_C57BL6NJ_T0056541.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95835659 95841275 + MGP_C57BL6NJ_P0056541 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056542.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95835820 95836834 + Pacsin3 protein_coding retained_intron MGP_C57BL6NJ_T0056543.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95835849 95840247 + MGP_C57BL6NJ_P0056543 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056544.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95835867 95844367 + MGP_C57BL6NJ_P0056544 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056545.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95836518 95844366 + MGP_C57BL6NJ_P0056545 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056546.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95836518 95844367 + MGP_C57BL6NJ_P0056546 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056547.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95836518 95840952 + MGP_C57BL6NJ_P0056547 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056548.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95836543 95841041 + MGP_C57BL6NJ_P0056548 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056549.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95837034 95844367 + MGP_C57BL6NJ_P0056549 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056550.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95837040 95841007 + MGP_C57BL6NJ_P0056550 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056551.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95838911 95839935 + Pacsin3 protein_coding processed_transcript MGP_C57BL6NJ_T0056552.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95839534 95841304 + MGP_C57BL6NJ_P0056552 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0056553.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95840510 95841375 + Pacsin3 protein_coding retained_intron MGP_C57BL6NJ_T0056554.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95842600 95843221 + Pacsin3 protein_coding retained_intron MGP_C57BL6NJ_T0056555.1 MGP_C57BL6NJ_G0026568.1 mouse_genomes_project 2 95842793 95844047 + MGP_C57BL6NJ_P0056555 Pacsin3 protein_coding protein_coding MGP_C57BL6NJ_T0059309.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410633 167413060 + MGP_C57BL6NJ_P0059309 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059310.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410662 167412794 + MGP_C57BL6NJ_P0059310 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059311.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410665 167413078 + MGP_C57BL6NJ_P0059311 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059312.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410671 167413060 + MGP_C57BL6NJ_P0059312 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059313.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410676 167412548 + MGP_C57BL6NJ_P0059313 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059314.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410678 167411928 + MGP_C57BL6NJ_P0059314 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059315.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410679 167412338 + MGP_C57BL6NJ_P0059315 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059316.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410685 167412336 + MGP_C57BL6NJ_P0059316 Nnat protein_coding protein_coding MGP_C57BL6NJ_T0059317.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167410695 167413073 + Nnat protein_coding retained_intron MGP_C57BL6NJ_T0059318.1 MGP_C57BL6NJ_G0027208.1 mouse_genomes_project 2 167411564 167412411 + Nnat protein_coding retained_intron MGP_C57BL6NJ_T0058599.1 MGP_C57BL6NJ_G0027037.1 mouse_genomes_project 2 157607121 157613932 + MGP_C57BL6NJ_P0058599 Cst8 protein_coding protein_coding MGP_C57BL6NJ_T0058600.1 MGP_C57BL6NJ_G0027037.1 mouse_genomes_project 2 157607170 157613932 + MGP_C57BL6NJ_P0058600 Cst8 protein_coding protein_coding MGP_C57BL6NJ_T0058601.1 MGP_C57BL6NJ_G0027037.1 mouse_genomes_project 2 157607239 157613932 + Cst8 protein_coding processed_transcript MGP_C57BL6NJ_T0055678.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447399 73504269 + MGP_C57BL6NJ_P0055678 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055679.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447434 73504265 + MGP_C57BL6NJ_P0055679 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055680.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447434 73504274 + MGP_C57BL6NJ_P0055680 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055681.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447451 73504262 + MGP_C57BL6NJ_P0055681 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055682.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447499 73486491 + Dync1i2 protein_coding processed_transcript MGP_C57BL6NJ_T0055683.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447527 73504274 + MGP_C57BL6NJ_P0055683 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055684.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447665 73504268 + MGP_C57BL6NJ_P0055684 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055685.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447677 73503830 + MGP_C57BL6NJ_P0055685 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055686.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447685 73504274 + MGP_C57BL6NJ_P0055686 Dync1i2 protein_coding protein_coding MGP_C57BL6NJ_T0055687.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73447697 73469903 + Dync1i2 protein_coding retained_intron MGP_C57BL6NJ_T0055688.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73474275 73501345 + Dync1i2 protein_coding retained_intron MGP_C57BL6NJ_T0055689.1 MGP_C57BL6NJ_G0026239.1 mouse_genomes_project 2 73501517 73504029 + Dync1i2 protein_coding retained_intron MGP_C57BL6NJ_T0013819.1 MGP_C57BL6NJ_G0011864.1 mouse_genomes_project 2 36787807 36796396 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007344.1 MGP_C57BL6NJ_G0006022.1 mouse_genomes_project 2 31938712 31941444 + Gm13412 lincRNA lincRNA MGP_C57BL6NJ_T0100217.1 MGP_C57BL6NJ_G0038263.1 mouse_genomes_project 2 136848644 136848795 - Gm25703 snRNA snRNA MGP_C57BL6NJ_T0054730.1 MGP_C57BL6NJ_G0026051.1 mouse_genomes_project 2 32873037 32899262 - MGP_C57BL6NJ_P0054730 Zbtb34 protein_coding protein_coding MGP_C57BL6NJ_T0054731.1 MGP_C57BL6NJ_G0026051.1 mouse_genomes_project 2 32873037 32896160 - MGP_C57BL6NJ_P0054731 Zbtb34 protein_coding protein_coding MGP_C57BL6NJ_T0054732.1 MGP_C57BL6NJ_G0026051.1 mouse_genomes_project 2 32878848 32899255 - Zbtb34 protein_coding processed_transcript MGP_C57BL6NJ_T0055788.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76105553 76153129 - MGP_C57BL6NJ_P0055788 Chn1 protein_coding protein_coding MGP_C57BL6NJ_T0055789.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76105561 76267545 - MGP_C57BL6NJ_P0055789 Chn1 protein_coding protein_coding MGP_C57BL6NJ_T0055790.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76105561 76267545 - MGP_C57BL6NJ_P0055790 Chn1 protein_coding protein_coding MGP_C57BL6NJ_T0055791.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76107985 76211880 - MGP_C57BL6NJ_P0055791 Chn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055792.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76120428 76148256 - MGP_C57BL6NJ_P0055792 Chn1 protein_coding protein_coding MGP_C57BL6NJ_T0055793.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76121146 76267525 - MGP_C57BL6NJ_P0055793 Chn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055794.1 MGP_C57BL6NJ_G0026259.1 mouse_genomes_project 2 76170839 76267270 - MGP_C57BL6NJ_P0055794 Chn1 protein_coding protein_coding MGP_C57BL6NJ_T0101492.1 MGP_C57BL6NJ_G0039538.1 mouse_genomes_project 2 62706016 62706148 + Gm26422 snoRNA snoRNA MGP_C57BL6NJ_T0013768.1 MGP_C57BL6NJ_G0011813.1 mouse_genomes_project 2 16659595 16659668 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057581.1 MGP_C57BL6NJ_G0026804.1 mouse_genomes_project 2 128107797 128119556 - MGP_C57BL6NJ_P0057581 Zscan29 protein_coding protein_coding MGP_C57BL6NJ_T0057582.1 MGP_C57BL6NJ_G0026804.1 mouse_genomes_project 2 128107797 128118555 - MGP_C57BL6NJ_P0057582 Zscan29 protein_coding protein_coding MGP_C57BL6NJ_T0057583.1 MGP_C57BL6NJ_G0026804.1 mouse_genomes_project 2 128108583 128112865 - Zscan29 protein_coding retained_intron MGP_C57BL6NJ_T0013796.1 MGP_C57BL6NJ_G0011841.1 mouse_genomes_project 2 25856671 25858173 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053889.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25730052 25733869 + MGP_C57BL6NJ_P0053889 Surf2 protein_coding protein_coding MGP_C57BL6NJ_T0053890.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25730066 25733858 + Surf2 protein_coding processed_transcript MGP_C57BL6NJ_T0053891.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25730354 25733507 + Surf2 protein_coding processed_transcript MGP_C57BL6NJ_T0053892.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25730354 25733852 + Surf2 protein_coding retained_intron MGP_C57BL6NJ_T0053893.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25730498 25733639 + Surf2 protein_coding processed_transcript MGP_C57BL6NJ_T0053894.1 MGP_C57BL6NJ_G0025918.1 mouse_genomes_project 2 25731113 25733521 + Surf2 protein_coding processed_transcript MGP_C57BL6NJ_T0057105.1 MGP_C57BL6NJ_G0026688.1 mouse_genomes_project 2 117761852 117762791 - MGP_C57BL6NJ_P0057105 protein_coding protein_coding MGP_C57BL6NJ_T0054817.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34528402 34545581 - MGP_C57BL6NJ_P0054817 Traf1 protein_coding protein_coding MGP_C57BL6NJ_T0054818.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34529900 34549004 - MGP_C57BL6NJ_P0054818 Traf1 protein_coding protein_coding MGP_C57BL6NJ_T0054819.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34529902 34549191 - MGP_C57BL6NJ_P0054819 Traf1 protein_coding protein_coding MGP_C57BL6NJ_T0054820.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34534446 34549001 - Traf1 protein_coding processed_transcript MGP_C57BL6NJ_T0054821.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34543490 34545554 - MGP_C57BL6NJ_P0054821 Traf1 protein_coding protein_coding MGP_C57BL6NJ_T0054822.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34543599 34545579 - Traf1 protein_coding retained_intron MGP_C57BL6NJ_T0054823.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34543611 34546323 - Traf1 protein_coding processed_transcript MGP_C57BL6NJ_T0054824.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34544964 34549016 - Traf1 protein_coding retained_intron MGP_C57BL6NJ_T0054825.1 MGP_C57BL6NJ_G0026064.1 mouse_genomes_project 2 34545569 34548981 - Traf1 protein_coding processed_transcript MGP_C57BL6NJ_T0054870.1 MGP_C57BL6NJ_G0026072.1 mouse_genomes_project 2 34991191 35015062 - MGP_C57BL6NJ_P0054870 4930402F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0054871.1 MGP_C57BL6NJ_G0026072.1 mouse_genomes_project 2 34991211 35014944 - MGP_C57BL6NJ_P0054871 4930402F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0060012.1 MGP_C57BL6NJ_G0027383.1 mouse_genomes_project 2 185201533 185204208 + MGP_C57BL6NJ_P0060012 1700010B08Rik protein_coding protein_coding MGP_C57BL6NJ_T0004183.1 MGP_C57BL6NJ_G0003712.1 mouse_genomes_project 2 94979820 94985669 + 4933423P22Rik antisense antisense MGP_C57BL6NJ_T0004184.1 MGP_C57BL6NJ_G0003712.1 mouse_genomes_project 2 94979834 94989014 + 4933423P22Rik antisense antisense MGP_C57BL6NJ_T0099261.1 MGP_C57BL6NJ_G0037325.1 mouse_genomes_project 2 182528487 182528751 - Gm26489 scaRNA scaRNA MGP_C57BL6NJ_T0056009.1 MGP_C57BL6NJ_G0026304.1 mouse_genomes_project 2 83470183 83558883 - MGP_C57BL6NJ_P0056009 Nckap1 protein_coding protein_coding MGP_C57BL6NJ_T0056010.1 MGP_C57BL6NJ_G0026304.1 mouse_genomes_project 2 83470189 83558999 - MGP_C57BL6NJ_P0056010 Nckap1 protein_coding protein_coding MGP_C57BL6NJ_T0056011.1 MGP_C57BL6NJ_G0026304.1 mouse_genomes_project 2 83479640 83498249 - Nckap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056012.1 MGP_C57BL6NJ_G0026304.1 mouse_genomes_project 2 83520661 83530600 - Nckap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056013.1 MGP_C57BL6NJ_G0026304.1 mouse_genomes_project 2 83524473 83530320 - Nckap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056641.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814008 97007391 + MGP_C57BL6NJ_P0056641 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056642.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814077 97007397 + MGP_C57BL6NJ_P0056642 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056643.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814170 96852991 + Phf21a protein_coding processed_transcript MGP_C57BL6NJ_T0056644.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814178 97006455 + MGP_C57BL6NJ_P0056644 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056645.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814178 96963417 + MGP_C57BL6NJ_P0056645 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056646.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814204 96853500 + Phf21a protein_coding retained_intron MGP_C57BL6NJ_T0056647.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96814204 96860491 + MGP_C57BL6NJ_P0056647 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056648.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96815136 96860494 + MGP_C57BL6NJ_P0056648 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056649.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96815160 97006463 + MGP_C57BL6NJ_P0056649 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056650.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96816142 96860506 + MGP_C57BL6NJ_P0056650 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056651.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96852950 96867377 + MGP_C57BL6NJ_P0056651 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056652.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860349 97010228 + MGP_C57BL6NJ_P0056652 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056653.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860349 97010228 + MGP_C57BL6NJ_P0056653 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056654.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860349 97010228 + MGP_C57BL6NJ_P0056654 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056655.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860349 97010228 + MGP_C57BL6NJ_P0056655 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056656.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860463 97010228 + MGP_C57BL6NJ_P0056656 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056657.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96860471 96970252 + MGP_C57BL6NJ_P0056657 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056658.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96867380 97005992 + MGP_C57BL6NJ_P0056658 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056659.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96963576 96973844 + MGP_C57BL6NJ_P0056659 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056660.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96973872 97004739 + MGP_C57BL6NJ_P0056660 Phf21a protein_coding protein_coding MGP_C57BL6NJ_T0056661.1 MGP_C57BL6NJ_G0026584.1 mouse_genomes_project 2 96994472 97002555 + Phf21a protein_coding retained_intron MGP_C57BL6NJ_T0001196.1 MGP_C57BL6NJ_G0001102.1 mouse_genomes_project 2 35059240 35060231 - TEC TEC MGP_C57BL6NJ_T0057759.1 MGP_C57BL6NJ_G0026840.1 mouse_genomes_project 2 129838403 129859292 - MGP_C57BL6NJ_P0057759 Slc30a4 protein_coding protein_coding MGP_C57BL6NJ_T0057760.1 MGP_C57BL6NJ_G0026840.1 mouse_genomes_project 2 129840538 129859316 - MGP_C57BL6NJ_P0057760 Slc30a4 protein_coding protein_coding MGP_C57BL6NJ_T0058287.1 MGP_C57BL6NJ_G0026961.1 mouse_genomes_project 2 139946289 139947298 - Pcna protein_coding retained_intron MGP_C57BL6NJ_T0058288.1 MGP_C57BL6NJ_G0026961.1 mouse_genomes_project 2 139946289 139953122 - MGP_C57BL6NJ_P0058288 Pcna protein_coding protein_coding MGP_C57BL6NJ_T0058289.1 MGP_C57BL6NJ_G0026961.1 mouse_genomes_project 2 139947004 139952404 - Pcna protein_coding processed_transcript MGP_C57BL6NJ_T0058290.1 MGP_C57BL6NJ_G0026961.1 mouse_genomes_project 2 139951136 139952775 - Pcna protein_coding retained_intron MGP_C57BL6NJ_T0058291.1 MGP_C57BL6NJ_G0026961.1 mouse_genomes_project 2 139951236 139952410 - Pcna protein_coding retained_intron MGP_C57BL6NJ_T0054588.1 MGP_C57BL6NJ_G0026028.1 mouse_genomes_project 2 31985991 31988711 + MGP_C57BL6NJ_P0054588 Dpm2 protein_coding protein_coding MGP_C57BL6NJ_T0054589.1 MGP_C57BL6NJ_G0026028.1 mouse_genomes_project 2 31985991 31988695 + MGP_C57BL6NJ_P0054589 Dpm2 protein_coding protein_coding MGP_C57BL6NJ_T0054590.1 MGP_C57BL6NJ_G0026028.1 mouse_genomes_project 2 31986000 31988213 + Dpm2 protein_coding retained_intron MGP_C57BL6NJ_T0054591.1 MGP_C57BL6NJ_G0026028.1 mouse_genomes_project 2 31987178 31988588 + Dpm2 protein_coding retained_intron MGP_C57BL6NJ_T0053180.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16272405 16297920 - MGP_C57BL6NJ_P0053180 Dnajc1 protein_coding protein_coding MGP_C57BL6NJ_T0053181.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16283084 16483586 - MGP_C57BL6NJ_P0053181 Dnajc1 protein_coding protein_coding MGP_C57BL6NJ_T0053182.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16285968 16295265 - Dnajc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053183.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16292111 16483605 - MGP_C57BL6NJ_P0053183 Dnajc1 protein_coding protein_coding MGP_C57BL6NJ_T0053184.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16295497 16483195 - MGP_C57BL6NJ_P0053184 Dnajc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053185.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16295497 16483417 - MGP_C57BL6NJ_P0053185 Dnajc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053186.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16295517 16483196 - MGP_C57BL6NJ_P0053186 Dnajc1 protein_coding protein_coding MGP_C57BL6NJ_T0053187.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16297893 16390697 - MGP_C57BL6NJ_P0053187 Dnajc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053188.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16390318 16393939 - Dnajc1 protein_coding retained_intron MGP_C57BL6NJ_T0053189.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16392265 16483599 - Dnajc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053190.1 MGP_C57BL6NJ_G0025790.1 mouse_genomes_project 2 16401468 16483605 - Dnajc1 protein_coding retained_intron MGP_C57BL6NJ_T0060312.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543091 193566445 + MGP_C57BL6NJ_P0060312 Tpd52l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060313.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543113 193558599 + Tpd52l2 protein_coding processed_transcript MGP_C57BL6NJ_T0060314.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543114 193569296 + MGP_C57BL6NJ_P0060314 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060315.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543130 193568701 + MGP_C57BL6NJ_P0060315 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060316.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543132 193566456 + MGP_C57BL6NJ_P0060316 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060317.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543136 193569292 + MGP_C57BL6NJ_P0060317 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060318.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543148 193567586 + MGP_C57BL6NJ_P0060318 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060319.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543178 193548504 + Tpd52l2 protein_coding retained_intron MGP_C57BL6NJ_T0060320.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193543180 193566717 + MGP_C57BL6NJ_P0060320 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060321.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193545794 193564386 + MGP_C57BL6NJ_P0060321 Tpd52l2 protein_coding protein_coding MGP_C57BL6NJ_T0060322.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193545815 193549100 + Tpd52l2 protein_coding retained_intron MGP_C57BL6NJ_T0060323.1 MGP_C57BL6NJ_G0027446.1 mouse_genomes_project 2 193563907 193566663 + Tpd52l2 protein_coding retained_intron MGP_C57BL6NJ_T0014078.1 MGP_C57BL6NJ_G0012123.1 mouse_genomes_project 2 134235387 134236213 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059075.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165528973 165568244 + Cep250 protein_coding retained_intron MGP_C57BL6NJ_T0059076.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165529073 165580574 + MGP_C57BL6NJ_P0059076 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059077.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165529073 165580574 + MGP_C57BL6NJ_P0059077 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059078.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165529073 165580574 + MGP_C57BL6NJ_P0059078 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059079.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165529087 165551032 + MGP_C57BL6NJ_P0059079 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059080.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165529109 165541650 + MGP_C57BL6NJ_P0059080 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059082.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165552975 165580574 + Cep250 protein_coding retained_intron MGP_C57BL6NJ_T0059083.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165561180 165563068 + Cep250 protein_coding retained_intron MGP_C57BL6NJ_T0059084.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165567513 165571234 + MGP_C57BL6NJ_P0059084 Cep250 protein_coding protein_coding MGP_C57BL6NJ_T0059085.1 MGP_C57BL6NJ_G0027174.1 mouse_genomes_project 2 165567545 165572227 + MGP_C57BL6NJ_P0059085 Cep250 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054746.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33699450 33910910 - MGP_C57BL6NJ_P0054746 Pbx3 protein_coding protein_coding MGP_C57BL6NJ_T0054747.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33700865 33820719 - Pbx3 protein_coding processed_transcript MGP_C57BL6NJ_T0054748.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33700873 33910910 - MGP_C57BL6NJ_P0054748 Pbx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054749.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33700873 33910910 - MGP_C57BL6NJ_P0054749 Pbx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054750.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33704851 33909836 - MGP_C57BL6NJ_P0054750 Pbx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054751.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33744350 33911814 - MGP_C57BL6NJ_P0054751 Pbx3 protein_coding protein_coding MGP_C57BL6NJ_T0054752.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33755355 33910243 - MGP_C57BL6NJ_P0054752 Pbx3 protein_coding protein_coding MGP_C57BL6NJ_T0054753.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33755482 33910140 - MGP_C57BL6NJ_P0054753 Pbx3 protein_coding protein_coding MGP_C57BL6NJ_T0054754.1 MGP_C57BL6NJ_G0026055.1 mouse_genomes_project 2 33907101 33910782 - Pbx3 protein_coding retained_intron MGP_C57BL6NJ_T0059600.1 MGP_C57BL6NJ_G0027287.1 mouse_genomes_project 2 175067238 175068561 + MGP_C57BL6NJ_P0059600 Wfdc10 protein_coding protein_coding MGP_C57BL6NJ_T0013761.1 MGP_C57BL6NJ_G0011806.1 mouse_genomes_project 2 14947522 14948533 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055018.1 MGP_C57BL6NJ_G0026122.1 mouse_genomes_project 2 38492158 38510864 - MGP_C57BL6NJ_P0055018 Nr5a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055019.1 MGP_C57BL6NJ_G0026122.1 mouse_genomes_project 2 38499463 38510284 - Nr5a1 protein_coding retained_intron MGP_C57BL6NJ_T0059604.1 MGP_C57BL6NJ_G0027290.1 mouse_genomes_project 2 175119073 175123026 + MGP_C57BL6NJ_P0059604 Spint4 protein_coding protein_coding MGP_C57BL6NJ_T0058731.1 MGP_C57BL6NJ_G0027078.1 mouse_genomes_project 2 161404194 161424244 + MGP_C57BL6NJ_P0058731 Tbc1d20 protein_coding protein_coding MGP_C57BL6NJ_T0058732.1 MGP_C57BL6NJ_G0027078.1 mouse_genomes_project 2 161404217 161418383 + MGP_C57BL6NJ_P0058732 Tbc1d20 protein_coding protein_coding MGP_C57BL6NJ_T0058733.1 MGP_C57BL6NJ_G0027078.1 mouse_genomes_project 2 161404238 161424244 + Tbc1d20 protein_coding retained_intron MGP_C57BL6NJ_T0058734.1 MGP_C57BL6NJ_G0027078.1 mouse_genomes_project 2 161404546 161418729 + MGP_C57BL6NJ_P0058734 Tbc1d20 protein_coding protein_coding MGP_C57BL6NJ_T0058735.1 MGP_C57BL6NJ_G0027078.1 mouse_genomes_project 2 161418499 161421066 + Tbc1d20 protein_coding retained_intron MGP_C57BL6NJ_T0014066.1 MGP_C57BL6NJ_G0012111.1 mouse_genomes_project 2 126476768 126477154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004307.1 MGP_C57BL6NJ_G0003801.1 mouse_genomes_project 2 174462069 174466786 + Gm11455 antisense antisense MGP_C57BL6NJ_T0057111.1 MGP_C57BL6NJ_G0026694.1 mouse_genomes_project 2 118037565 118039016 - MGP_C57BL6NJ_P0057111 Olfr1303 protein_coding protein_coding MGP_C57BL6NJ_T0100234.1 MGP_C57BL6NJ_G0038280.1 mouse_genomes_project 2 193178927 193179031 + Gm24892 snRNA snRNA MGP_C57BL6NJ_T0014201.1 MGP_C57BL6NJ_G0012246.1 mouse_genomes_project 2 185500113 185500323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056293.1 MGP_C57BL6NJ_G0026459.1 mouse_genomes_project 2 92063605 92064571 + MGP_C57BL6NJ_P0056293 Olfr1161 protein_coding protein_coding MGP_C57BL6NJ_T0057142.1 MGP_C57BL6NJ_G0026713.1 mouse_genomes_project 2 118737184 118738783 - MGP_C57BL6NJ_P0057142 Chrm5 protein_coding protein_coding MGP_C57BL6NJ_T0004261.1 MGP_C57BL6NJ_G0003763.1 mouse_genomes_project 2 152234209 152274435 - Pcsk2os2 antisense antisense MGP_C57BL6NJ_T0004262.1 MGP_C57BL6NJ_G0003763.1 mouse_genomes_project 2 152235790 152281210 - Pcsk2os2 antisense antisense MGP_C57BL6NJ_T0059601.1 MGP_C57BL6NJ_G0027288.1 mouse_genomes_project 2 175074146 175087883 - MGP_C57BL6NJ_P0059601 Wfdc11 protein_coding protein_coding MGP_C57BL6NJ_T0059602.1 MGP_C57BL6NJ_G0027288.1 mouse_genomes_project 2 175074289 175076788 - MGP_C57BL6NJ_P0059602 Wfdc11 protein_coding protein_coding MGP_C57BL6NJ_T0099259.1 MGP_C57BL6NJ_G0037323.1 mouse_genomes_project 2 112588268 112588391 + Gm22813 scaRNA scaRNA MGP_C57BL6NJ_T0007428.1 MGP_C57BL6NJ_G0006092.1 mouse_genomes_project 2 95830448 95835701 - Gm17281 lincRNA lincRNA MGP_C57BL6NJ_T0011765.1 MGP_C57BL6NJ_G0009850.1 mouse_genomes_project 2 76329548 76329715 - Gm27421 misc_RNA misc_RNA MGP_C57BL6NJ_T0054211.1 MGP_C57BL6NJ_G0025974.1 mouse_genomes_project 2 29301449 29309189 + MGP_C57BL6NJ_P0054211 Slc39a1 protein_coding protein_coding MGP_C57BL6NJ_T0055063.1 MGP_C57BL6NJ_G0026130.1 mouse_genomes_project 2 39066186 39109304 - MGP_C57BL6NJ_P0055063 Ppp6c protein_coding protein_coding MGP_C57BL6NJ_T0055064.1 MGP_C57BL6NJ_G0026130.1 mouse_genomes_project 2 39068560 39109345 - MGP_C57BL6NJ_P0055064 Ppp6c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055065.1 MGP_C57BL6NJ_G0026130.1 mouse_genomes_project 2 39068603 39109383 - MGP_C57BL6NJ_P0055065 Ppp6c protein_coding protein_coding MGP_C57BL6NJ_T0055066.1 MGP_C57BL6NJ_G0026130.1 mouse_genomes_project 2 39069323 39072817 - Ppp6c protein_coding processed_transcript MGP_C57BL6NJ_T0010684.1 MGP_C57BL6NJ_G0008769.1 mouse_genomes_project 2 129063840 129063908 + miRNA miRNA MGP_C57BL6NJ_T0010632.1 MGP_C57BL6NJ_G0008717.1 mouse_genomes_project 2 32074861 32074947 + Mir1954 miRNA miRNA MGP_C57BL6NJ_T0010714.1 MGP_C57BL6NJ_G0008799.1 mouse_genomes_project 2 178941932 178942010 - Gm24327 miRNA miRNA MGP_C57BL6NJ_T0013797.1 MGP_C57BL6NJ_G0011842.1 mouse_genomes_project 2 27437321 27441434 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057165.1 MGP_C57BL6NJ_G0026718.1 mouse_genomes_project 2 120071400 120088990 - MGP_C57BL6NJ_P0057165 Grem1 protein_coding protein_coding MGP_C57BL6NJ_T0056741.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98595188 98611663 - MGP_C57BL6NJ_P0056741 Accs protein_coding protein_coding MGP_C57BL6NJ_T0056742.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98597159 98611401 - MGP_C57BL6NJ_P0056742 Accs protein_coding protein_coding MGP_C57BL6NJ_T0056743.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98597159 98611521 - MGP_C57BL6NJ_P0056743 Accs protein_coding protein_coding MGP_C57BL6NJ_T0056744.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98597709 98601081 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056745.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98598740 98611665 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056746.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98599732 98609651 - MGP_C57BL6NJ_P0056746 Accs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056747.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98600914 98603990 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056748.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98603001 98604103 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056749.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98604290 98611538 - MGP_C57BL6NJ_P0056749 Accs protein_coding protein_coding MGP_C57BL6NJ_T0056750.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98604519 98611661 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056751.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98604530 98611661 - Accs protein_coding retained_intron MGP_C57BL6NJ_T0056752.1 MGP_C57BL6NJ_G0026600.1 mouse_genomes_project 2 98606742 98607506 - Accs protein_coding processed_transcript MGP_C57BL6NJ_T0056124.1 MGP_C57BL6NJ_G0026332.1 mouse_genomes_project 2 88223749 88241555 - MGP_C57BL6NJ_P0056124 Rtn4rl2 protein_coding protein_coding MGP_C57BL6NJ_T0056125.1 MGP_C57BL6NJ_G0026332.1 mouse_genomes_project 2 88223771 88241537 - MGP_C57BL6NJ_P0056125 Rtn4rl2 protein_coding protein_coding MGP_C57BL6NJ_T0056126.1 MGP_C57BL6NJ_G0026332.1 mouse_genomes_project 2 88232348 88241321 - Rtn4rl2 protein_coding processed_transcript MGP_C57BL6NJ_T0103035.1 MGP_C57BL6NJ_G0040829.1 mouse_genomes_project 2 92346622 92405252 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101548.1 MGP_C57BL6NJ_G0039594.1 mouse_genomes_project 2 177785014 177785103 + Gm23201 snoRNA snoRNA MGP_C57BL6NJ_T0014020.1 MGP_C57BL6NJ_G0012065.1 mouse_genomes_project 2 109066099 109066529 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054194.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29210707 29241875 - MGP_C57BL6NJ_P0054194 Zer1 protein_coding protein_coding MGP_C57BL6NJ_T0054195.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29210707 29241747 - MGP_C57BL6NJ_P0054195 Zer1 protein_coding protein_coding MGP_C57BL6NJ_T0054196.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29217096 29219067 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0054197.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29217752 29220036 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0054198.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29222602 29241878 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0054199.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29222863 29241872 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0054200.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29224094 29228068 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0054201.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29224471 29224937 - Zer1 protein_coding processed_transcript MGP_C57BL6NJ_T0054202.1 MGP_C57BL6NJ_G0025972.1 mouse_genomes_project 2 29224809 29225837 - Zer1 protein_coding retained_intron MGP_C57BL6NJ_T0058577.1 MGP_C57BL6NJ_G0027026.1 mouse_genomes_project 2 156809519 156812591 - MGP_C57BL6NJ_P0058577 Foxa2 protein_coding protein_coding MGP_C57BL6NJ_T0058578.1 MGP_C57BL6NJ_G0027026.1 mouse_genomes_project 2 156809519 156813612 - MGP_C57BL6NJ_P0058578 Foxa2 protein_coding protein_coding MGP_C57BL6NJ_T0058579.1 MGP_C57BL6NJ_G0027026.1 mouse_genomes_project 2 156810184 156813539 - MGP_C57BL6NJ_P0058579 Foxa2 protein_coding protein_coding MGP_C57BL6NJ_T0058580.1 MGP_C57BL6NJ_G0027026.1 mouse_genomes_project 2 156810882 156812107 - Foxa2 protein_coding processed_transcript MGP_C57BL6NJ_T0055246.1 MGP_C57BL6NJ_G0026157.1 mouse_genomes_project 2 55069918 55071378 - MGP_C57BL6NJ_P0055246 Rprm protein_coding protein_coding MGP_C57BL6NJ_T0018255.1 MGP_C57BL6NJ_G0015824.1 mouse_genomes_project 2 78417774 78422887 + Gm13657 processed_transcript processed_transcript MGP_C57BL6NJ_T0054315.1 MGP_C57BL6NJ_G0025990.1 mouse_genomes_project 2 29786715 29803075 + MGP_C57BL6NJ_P0054315 Cstad protein_coding protein_coding MGP_C57BL6NJ_T0054316.1 MGP_C57BL6NJ_G0025990.1 mouse_genomes_project 2 29799351 29802349 + Cstad protein_coding processed_transcript MGP_C57BL6NJ_T0007577.1 MGP_C57BL6NJ_G0006213.1 mouse_genomes_project 2 179982591 179983230 + 1700017J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0004076.1 MGP_C57BL6NJ_G0003633.1 mouse_genomes_project 2 25114570 25120303 + Gm13563 antisense antisense MGP_C57BL6NJ_T0004077.1 MGP_C57BL6NJ_G0003633.1 mouse_genomes_project 2 25118596 25120839 + Gm13563 antisense antisense MGP_C57BL6NJ_T0004078.1 MGP_C57BL6NJ_G0003633.1 mouse_genomes_project 2 25120501 25122063 + Gm13563 antisense antisense MGP_C57BL6NJ_T0053688.1 MGP_C57BL6NJ_G0025882.1 mouse_genomes_project 2 24351317 24354673 + MGP_C57BL6NJ_P0053688 Lcn10 protein_coding protein_coding MGP_C57BL6NJ_T0010587.1 MGP_C57BL6NJ_G0008672.1 mouse_genomes_project 2 8067022 8067118 + Gm23542 miRNA miRNA MGP_C57BL6NJ_T0013974.1 MGP_C57BL6NJ_G0012019.1 mouse_genomes_project 2 91297171 91300926 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053159.1 MGP_C57BL6NJ_G0025785.1 mouse_genomes_project 2 16037934 16038476 - MGP_C57BL6NJ_P0053159 H2afb1 protein_coding protein_coding MGP_C57BL6NJ_T0059537.1 MGP_C57BL6NJ_G0027261.1 mouse_genomes_project 2 174502693 174509200 - MGP_C57BL6NJ_P0059537 Wfdc5 protein_coding protein_coding MGP_C57BL6NJ_T0059538.1 MGP_C57BL6NJ_G0027261.1 mouse_genomes_project 2 174503833 174509056 - MGP_C57BL6NJ_P0059538 Wfdc5 protein_coding protein_coding MGP_C57BL6NJ_T0014195.1 MGP_C57BL6NJ_G0012240.1 mouse_genomes_project 2 178328098 178328375 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102995.1 MGP_C57BL6NJ_G0040789.1 mouse_genomes_project 2 34416172 34416937 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0056336.1 MGP_C57BL6NJ_G0026497.1 mouse_genomes_project 2 93301275 93302211 - MGP_C57BL6NJ_P0056336 Olfr1214 protein_coding protein_coding MGP_C57BL6NJ_T0058638.1 MGP_C57BL6NJ_G0027054.1 mouse_genomes_project 2 159665916 159674575 - MGP_C57BL6NJ_P0058638 Vsx1 protein_coding protein_coding MGP_C57BL6NJ_T0004048.1 MGP_C57BL6NJ_G0003611.1 mouse_genomes_project 2 9175713 9187622 + Gm10851 antisense antisense MGP_C57BL6NJ_T0054158.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055676 29131398 + MGP_C57BL6NJ_P0054158 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054159.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055676 29131401 + MGP_C57BL6NJ_P0054159 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054160.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055793 29092539 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054161.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055795 29057266 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054162.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055796 29076020 + MGP_C57BL6NJ_P0054162 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054163.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055796 29131401 + MGP_C57BL6NJ_P0054163 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054164.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055796 29131395 + MGP_C57BL6NJ_P0054164 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054165.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29055799 29131401 + MGP_C57BL6NJ_P0054165 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054166.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29068916 29131134 + MGP_C57BL6NJ_P0054166 Sptan1 protein_coding protein_coding MGP_C57BL6NJ_T0054167.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29090457 29092532 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054168.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29100383 29106602 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054169.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29102587 29105146 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054170.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29121770 29124933 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054171.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29127513 29130467 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054172.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29127546 29130451 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054173.1 MGP_C57BL6NJ_G0025967.1 mouse_genomes_project 2 29130258 29131125 + Sptan1 protein_coding retained_intron MGP_C57BL6NJ_T0054950.1 MGP_C57BL6NJ_G0026107.1 mouse_genomes_project 2 36921130 36922663 + MGP_C57BL6NJ_P0054950 protein_coding protein_coding MGP_C57BL6NJ_T0053910.1 MGP_C57BL6NJ_G0025922.1 mouse_genomes_project 2 25792937 25824125 + MGP_C57BL6NJ_P0053910 Adamts13 protein_coding protein_coding MGP_C57BL6NJ_T0053911.1 MGP_C57BL6NJ_G0025922.1 mouse_genomes_project 2 25793014 25830001 + MGP_C57BL6NJ_P0053911 Adamts13 protein_coding protein_coding MGP_C57BL6NJ_T0053912.1 MGP_C57BL6NJ_G0025922.1 mouse_genomes_project 2 25827052 25829818 + Adamts13 protein_coding processed_transcript MGP_C57BL6NJ_T0056351.1 MGP_C57BL6NJ_G0026510.1 mouse_genomes_project 2 93604185 93605103 - MGP_C57BL6NJ_P0056351 Olfr1230 protein_coding protein_coding MGP_C57BL6NJ_T0053398.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23494235 23504224 - MGP_C57BL6NJ_P0053398 Arrdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053399.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23494235 23504313 - MGP_C57BL6NJ_P0053399 Arrdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053400.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23494238 23504206 - Arrdc1 protein_coding retained_intron MGP_C57BL6NJ_T0053401.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23494872 23504228 - MGP_C57BL6NJ_P0053401 Arrdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053402.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23494938 23504206 - Arrdc1 protein_coding retained_intron MGP_C57BL6NJ_T0053403.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495041 23504203 - MGP_C57BL6NJ_P0053403 Arrdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053404.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495066 23496084 - Arrdc1 protein_coding retained_intron MGP_C57BL6NJ_T0053405.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495206 23504235 - MGP_C57BL6NJ_P0053405 Arrdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053406.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495555 23496787 - Arrdc1 protein_coding retained_intron MGP_C57BL6NJ_T0053407.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495795 23504115 - MGP_C57BL6NJ_P0053407 Arrdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053408.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23495878 23497015 - Arrdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053409.1 MGP_C57BL6NJ_G0025830.1 mouse_genomes_project 2 23496167 23504249 - Arrdc1 protein_coding retained_intron MGP_C57BL6NJ_T0059836.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196318 178271366 + MGP_C57BL6NJ_P0059836 Slc9a8 protein_coding protein_coding MGP_C57BL6NJ_T0059837.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196327 178271364 + MGP_C57BL6NJ_P0059837 Slc9a8 protein_coding protein_coding MGP_C57BL6NJ_T0059838.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196327 178269002 + MGP_C57BL6NJ_P0059838 Slc9a8 protein_coding protein_coding MGP_C57BL6NJ_T0059839.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196329 178200741 + Slc9a8 protein_coding retained_intron MGP_C57BL6NJ_T0059840.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196336 178227768 + Slc9a8 protein_coding retained_intron MGP_C57BL6NJ_T0059841.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196338 178271365 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059842.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196343 178216131 + Slc9a8 protein_coding retained_intron MGP_C57BL6NJ_T0059843.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196344 178262100 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059844.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178196348 178271365 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059845.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178198725 178262127 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059846.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178231783 178262125 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059847.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178231872 178263477 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0059848.1 MGP_C57BL6NJ_G0027335.1 mouse_genomes_project 2 178231972 178271365 + Slc9a8 protein_coding processed_transcript MGP_C57BL6NJ_T0004083.1 MGP_C57BL6NJ_G0003636.1 mouse_genomes_project 2 25969497 25987546 - Dbhos antisense antisense MGP_C57BL6NJ_T0054379.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30274571 30404293 - MGP_C57BL6NJ_P0054379 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054380.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30274572 30404499 - MGP_C57BL6NJ_P0054380 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054381.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30274572 30349570 - MGP_C57BL6NJ_P0054381 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054382.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30274573 30404487 - MGP_C57BL6NJ_P0054382 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054383.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30275160 30404448 - MGP_C57BL6NJ_P0054383 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054384.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30276560 30349570 - Fnbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0054385.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281058 30363228 - MGP_C57BL6NJ_P0054385 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054386.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281363 30404293 - MGP_C57BL6NJ_P0054386 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054387.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281374 30404293 - MGP_C57BL6NJ_P0054387 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054388.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281374 30404293 - MGP_C57BL6NJ_P0054388 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054389.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281374 30404293 - MGP_C57BL6NJ_P0054389 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054390.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30281455 30307017 - MGP_C57BL6NJ_P0054390 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054391.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30302000 30404430 - MGP_C57BL6NJ_P0054391 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054392.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30307139 30404446 - MGP_C57BL6NJ_P0054392 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054393.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30310516 30374225 - MGP_C57BL6NJ_P0054393 Fnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054394.1 MGP_C57BL6NJ_G0026000.1 mouse_genomes_project 2 30349160 30363326 - Fnbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0059955.1 MGP_C57BL6NJ_G0027364.1 mouse_genomes_project 2 183675627 183685760 + MGP_C57BL6NJ_P0059955 Fam210b protein_coding protein_coding MGP_C57BL6NJ_T0100220.1 MGP_C57BL6NJ_G0038266.1 mouse_genomes_project 2 141145625 141145684 + Gm27449 snRNA snRNA MGP_C57BL6NJ_T0007459.1 MGP_C57BL6NJ_G0006116.1 mouse_genomes_project 2 114035058 114153375 - Gm13912 lincRNA lincRNA MGP_C57BL6NJ_T0007392.1 MGP_C57BL6NJ_G0006063.1 mouse_genomes_project 2 74072912 74074991 - Gm17250 lincRNA lincRNA MGP_C57BL6NJ_T0053335.1 MGP_C57BL6NJ_G0025818.1 mouse_genomes_project 2 22447830 22496543 - MGP_C57BL6NJ_P0053335 Hnmt protein_coding protein_coding MGP_C57BL6NJ_T0053336.1 MGP_C57BL6NJ_G0025818.1 mouse_genomes_project 2 22447860 22496229 - MGP_C57BL6NJ_P0053336 Hnmt protein_coding protein_coding MGP_C57BL6NJ_T0053337.1 MGP_C57BL6NJ_G0025818.1 mouse_genomes_project 2 22448449 22496016 - MGP_C57BL6NJ_P0053337 Hnmt protein_coding protein_coding MGP_C57BL6NJ_T0013792.1 MGP_C57BL6NJ_G0011837.1 mouse_genomes_project 2 24194575 24194816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014174.1 MGP_C57BL6NJ_G0012219.1 mouse_genomes_project 2 168352633 168352922 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054872.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35018052 35055553 - MGP_C57BL6NJ_P0054872 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054873.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35018052 35095959 - MGP_C57BL6NJ_P0054873 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054874.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35018056 35096142 - MGP_C57BL6NJ_P0054874 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054875.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35018056 35095942 - MGP_C57BL6NJ_P0054875 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054876.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35019982 35043705 - MGP_C57BL6NJ_P0054876 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054877.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35019982 35043705 - MGP_C57BL6NJ_P0054877 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054878.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35028240 35065081 - MGP_C57BL6NJ_P0054878 Ggta1 protein_coding protein_coding MGP_C57BL6NJ_T0054879.1 MGP_C57BL6NJ_G0026073.1 mouse_genomes_project 2 35043706 35070808 - Ggta1 protein_coding processed_transcript MGP_C57BL6NJ_T0007310.1 MGP_C57BL6NJ_G0005997.1 mouse_genomes_project 2 8958754 8963245 - Gm38171 lincRNA lincRNA MGP_C57BL6NJ_T0099374.1 MGP_C57BL6NJ_G0037432.1 mouse_genomes_project 2 137040132 137058320 - Gm14040 sense_intronic sense_intronic MGP_C57BL6NJ_T0101541.1 MGP_C57BL6NJ_G0039587.1 mouse_genomes_project 2 168328449 168328582 + Gm25129 snoRNA snoRNA MGP_C57BL6NJ_T0054460.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31318891 31408862 + MGP_C57BL6NJ_P0054460 Nup214 protein_coding protein_coding MGP_C57BL6NJ_T0054461.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31318941 31325747 + Nup214 protein_coding retained_intron MGP_C57BL6NJ_T0054462.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31325562 31337152 + Nup214 protein_coding processed_transcript MGP_C57BL6NJ_T0054463.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31340582 31344459 + Nup214 protein_coding processed_transcript MGP_C57BL6NJ_T0054464.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31343722 31349594 + MGP_C57BL6NJ_P0054464 Nup214 protein_coding protein_coding MGP_C57BL6NJ_T0054465.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31356905 31358279 + Nup214 protein_coding processed_transcript MGP_C57BL6NJ_T0054466.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31373786 31386531 + Nup214 protein_coding processed_transcript MGP_C57BL6NJ_T0054467.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31388784 31412928 + MGP_C57BL6NJ_P0054467 Nup214 protein_coding protein_coding MGP_C57BL6NJ_T0054468.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31399054 31408858 + MGP_C57BL6NJ_P0054468 Nup214 protein_coding protein_coding MGP_C57BL6NJ_T0054470.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31407485 31409345 + Nup214 protein_coding retained_intron MGP_C57BL6NJ_T0054471.1 MGP_C57BL6NJ_G0026013.1 mouse_genomes_project 2 31408182 31408856 + Nup214 protein_coding retained_intron MGP_C57BL6NJ_T0018261.1 MGP_C57BL6NJ_G0015830.1 mouse_genomes_project 2 92082425 92085340 - Gm13747 processed_transcript processed_transcript MGP_C57BL6NJ_T0057188.1 MGP_C57BL6NJ_G0026726.1 mouse_genomes_project 2 122042123 122248180 + MGP_C57BL6NJ_P0057188 BC052040 protein_coding protein_coding MGP_C57BL6NJ_T0057189.1 MGP_C57BL6NJ_G0026726.1 mouse_genomes_project 2 122042140 122248180 + MGP_C57BL6NJ_P0057189 BC052040 protein_coding protein_coding MGP_C57BL6NJ_T0057190.1 MGP_C57BL6NJ_G0026726.1 mouse_genomes_project 2 122042208 122102408 + BC052040 protein_coding processed_transcript MGP_C57BL6NJ_T0103013.1 MGP_C57BL6NJ_G0040807.1 mouse_genomes_project 2 89125839 89126293 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0057910.1 MGP_C57BL6NJ_G0026872.1 mouse_genomes_project 2 134551626 134576903 - MGP_C57BL6NJ_P0057910 1810024B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0057911.1 MGP_C57BL6NJ_G0026872.1 mouse_genomes_project 2 134569399 134576877 - 1810024B03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0001168.1 MGP_C57BL6NJ_G0001074.1 mouse_genomes_project 2 10747036 10750272 + TEC TEC MGP_C57BL6NJ_T0010649.1 MGP_C57BL6NJ_G0008734.1 mouse_genomes_project 2 69581118 69581178 + Mir7224 miRNA miRNA MGP_C57BL6NJ_T0013916.1 MGP_C57BL6NJ_G0011961.1 mouse_genomes_project 2 73567239 73568204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057574.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128086857 128093287 + Adal protein_coding retained_intron MGP_C57BL6NJ_T0057575.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128086868 128104217 + MGP_C57BL6NJ_P0057575 Adal protein_coding protein_coding MGP_C57BL6NJ_T0057576.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128086873 128093285 + Adal protein_coding retained_intron MGP_C57BL6NJ_T0057577.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128086882 128097845 + Adal protein_coding processed_transcript MGP_C57BL6NJ_T0057578.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128086950 128098033 + Adal protein_coding retained_intron MGP_C57BL6NJ_T0057579.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128090016 128104223 + MGP_C57BL6NJ_P0057579 Adal protein_coding protein_coding MGP_C57BL6NJ_T0057580.1 MGP_C57BL6NJ_G0026803.1 mouse_genomes_project 2 128097608 128103878 + Adal protein_coding retained_intron MGP_C57BL6NJ_T0013818.1 MGP_C57BL6NJ_G0011863.1 mouse_genomes_project 2 36740113 36740522 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057311.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125872557 125892590 - MGP_C57BL6NJ_P0057311 Rmdn3 protein_coding protein_coding MGP_C57BL6NJ_T0057312.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125874612 125876432 - Rmdn3 protein_coding retained_intron MGP_C57BL6NJ_T0057313.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125877974 125882996 - Rmdn3 protein_coding retained_intron MGP_C57BL6NJ_T0057314.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125881712 125883005 - Rmdn3 protein_coding retained_intron MGP_C57BL6NJ_T0057315.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125889583 125892380 - MGP_C57BL6NJ_P0057315 Rmdn3 protein_coding protein_coding MGP_C57BL6NJ_T0057316.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125889613 125892504 - MGP_C57BL6NJ_P0057316 Rmdn3 protein_coding protein_coding MGP_C57BL6NJ_T0057317.1 MGP_C57BL6NJ_G0026753.1 mouse_genomes_project 2 125889623 125892520 - MGP_C57BL6NJ_P0057317 Rmdn3 protein_coding protein_coding MGP_C57BL6NJ_T0059770.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176682199 176772738 - MGP_C57BL6NJ_P0059770 Sulf2 protein_coding protein_coding MGP_C57BL6NJ_T0059771.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176684120 176773507 - Sulf2 protein_coding processed_transcript MGP_C57BL6NJ_T0059772.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176684640 176685989 - Sulf2 protein_coding retained_intron MGP_C57BL6NJ_T0059773.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176684785 176688090 - Sulf2 protein_coding processed_transcript MGP_C57BL6NJ_T0059774.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176703168 176772708 - Sulf2 protein_coding processed_transcript MGP_C57BL6NJ_T0059775.1 MGP_C57BL6NJ_G0027323.1 mouse_genomes_project 2 176748614 176772325 - Sulf2 protein_coding processed_transcript MGP_C57BL6NJ_T0007544.1 MGP_C57BL6NJ_G0006184.1 mouse_genomes_project 2 168301715 168301847 - Gm23925 lincRNA lincRNA MGP_C57BL6NJ_T0053311.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21408494 21451413 + MGP_C57BL6NJ_P0053311 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0053312.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21408527 21451413 + MGP_C57BL6NJ_P0053312 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0053313.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21408561 21415909 + MGP_C57BL6NJ_P0053313 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0053314.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21409394 21451411 + MGP_C57BL6NJ_P0053314 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0053315.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21409398 21451413 + MGP_C57BL6NJ_P0053315 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0053316.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21409482 21451419 + MGP_C57BL6NJ_P0053316 Acbd5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053317.1 MGP_C57BL6NJ_G0025812.1 mouse_genomes_project 2 21409653 21427904 + MGP_C57BL6NJ_P0053317 Acbd5 protein_coding protein_coding MGP_C57BL6NJ_T0018375.1 MGP_C57BL6NJ_G0015881.1 mouse_genomes_project 2 171675304 171675627 - Gm29229 processed_transcript processed_transcript MGP_C57BL6NJ_T0007361.1 MGP_C57BL6NJ_G0006035.1 mouse_genomes_project 2 45785816 45831761 + Gm13479 lincRNA lincRNA MGP_C57BL6NJ_T0058722.1 MGP_C57BL6NJ_G0027075.1 mouse_genomes_project 2 161194649 161200196 + Srxn1 protein_coding processed_transcript MGP_C57BL6NJ_T0058723.1 MGP_C57BL6NJ_G0027075.1 mouse_genomes_project 2 161194649 161200085 + Srxn1 protein_coding processed_transcript MGP_C57BL6NJ_T0058724.1 MGP_C57BL6NJ_G0027075.1 mouse_genomes_project 2 161194657 161202250 + MGP_C57BL6NJ_P0058724 Srxn1 protein_coding protein_coding MGP_C57BL6NJ_T0054901.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35746514 35768623 - MGP_C57BL6NJ_P0054901 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054902.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35746514 35769834 - MGP_C57BL6NJ_P0054902 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054903.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35746514 35769971 - MGP_C57BL6NJ_P0054903 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054904.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35746514 35768623 - MGP_C57BL6NJ_P0054904 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054905.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35746515 35769971 - MGP_C57BL6NJ_P0054905 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054906.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35748246 35758836 - MGP_C57BL6NJ_P0054906 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054907.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35748249 35769454 - MGP_C57BL6NJ_P0054907 Lhx6 protein_coding protein_coding MGP_C57BL6NJ_T0054908.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35758787 35768155 - Lhx6 protein_coding retained_intron MGP_C57BL6NJ_T0054909.1 MGP_C57BL6NJ_G0026078.1 mouse_genomes_project 2 35765885 35769818 - Lhx6 protein_coding processed_transcript MGP_C57BL6NJ_T0007425.1 MGP_C57BL6NJ_G0006089.1 mouse_genomes_project 2 87817919 87845151 - Gm13710 lincRNA lincRNA MGP_C57BL6NJ_T0057061.1 MGP_C57BL6NJ_G0026664.1 mouse_genomes_project 2 115934052 116036835 + MGP_C57BL6NJ_P0057061 Lgr4 protein_coding protein_coding MGP_C57BL6NJ_T0057062.1 MGP_C57BL6NJ_G0026664.1 mouse_genomes_project 2 115934052 116036835 + MGP_C57BL6NJ_P0057062 Lgr4 protein_coding protein_coding MGP_C57BL6NJ_T0057063.1 MGP_C57BL6NJ_G0026664.1 mouse_genomes_project 2 115995844 116017954 + Lgr4 protein_coding processed_transcript MGP_C57BL6NJ_T0057064.1 MGP_C57BL6NJ_G0026664.1 mouse_genomes_project 2 116020758 116021691 + Lgr4 protein_coding retained_intron MGP_C57BL6NJ_T0014015.1 MGP_C57BL6NJ_G0012060.1 mouse_genomes_project 2 107580717 107581178 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004074.1 MGP_C57BL6NJ_G0003631.1 mouse_genomes_project 2 24769192 24769589 + antisense antisense MGP_C57BL6NJ_T0056817.1 MGP_C57BL6NJ_G0026614.1 mouse_genomes_project 2 107281415 107292109 + Commd9 protein_coding processed_transcript MGP_C57BL6NJ_T0056818.1 MGP_C57BL6NJ_G0026614.1 mouse_genomes_project 2 107281421 107296815 + MGP_C57BL6NJ_P0056818 Commd9 protein_coding protein_coding MGP_C57BL6NJ_T0056819.1 MGP_C57BL6NJ_G0026614.1 mouse_genomes_project 2 107281428 107292375 + Commd9 protein_coding retained_intron MGP_C57BL6NJ_T0056820.1 MGP_C57BL6NJ_G0026614.1 mouse_genomes_project 2 107281431 107290568 + Commd9 protein_coding retained_intron MGP_C57BL6NJ_T0013814.1 MGP_C57BL6NJ_G0011859.1 mouse_genomes_project 2 35133109 35133416 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014091.1 MGP_C57BL6NJ_G0012136.1 mouse_genomes_project 2 138630777 138631413 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059738.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176124595 176323000 + MGP_C57BL6NJ_P0059738 Eya2 protein_coding protein_coding MGP_C57BL6NJ_T0059739.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176190819 176323008 + MGP_C57BL6NJ_P0059739 Eya2 protein_coding protein_coding MGP_C57BL6NJ_T0059740.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176190839 176254268 + Eya2 protein_coding processed_transcript MGP_C57BL6NJ_T0059741.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176251767 176316550 + Eya2 protein_coding processed_transcript MGP_C57BL6NJ_T0059742.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176312117 176317419 + Eya2 protein_coding processed_transcript MGP_C57BL6NJ_T0059743.1 MGP_C57BL6NJ_G0027320.1 mouse_genomes_project 2 176319479 176322543 + Eya2 protein_coding processed_transcript MGP_C57BL6NJ_T0014059.1 MGP_C57BL6NJ_G0012104.1 mouse_genomes_project 2 123622795 123625153 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057751.1 MGP_C57BL6NJ_G0026838.1 mouse_genomes_project 2 129731288 129750363 - MGP_C57BL6NJ_P0057751 Gatm protein_coding protein_coding MGP_C57BL6NJ_T0057752.1 MGP_C57BL6NJ_G0026838.1 mouse_genomes_project 2 129732085 129735131 - Gatm protein_coding processed_transcript MGP_C57BL6NJ_T0057753.1 MGP_C57BL6NJ_G0026838.1 mouse_genomes_project 2 129732202 129735409 - Gatm protein_coding retained_intron MGP_C57BL6NJ_T0013758.1 MGP_C57BL6NJ_G0011803.1 mouse_genomes_project 2 13249137 13250110 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010710.1 MGP_C57BL6NJ_G0008795.1 mouse_genomes_project 2 170727683 170727808 + Gm23968 miRNA miRNA MGP_C57BL6NJ_T0054867.1 MGP_C57BL6NJ_G0026070.1 mouse_genomes_project 2 34922784 34945761 - MGP_C57BL6NJ_P0054867 Stom protein_coding protein_coding MGP_C57BL6NJ_T0054868.1 MGP_C57BL6NJ_G0026070.1 mouse_genomes_project 2 34924139 34929303 - Stom protein_coding retained_intron MGP_C57BL6NJ_T0018266.1 MGP_C57BL6NJ_G0015834.1 mouse_genomes_project 2 95457442 95466585 - Ptpmt1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018267.1 MGP_C57BL6NJ_G0015834.1 mouse_genomes_project 2 95459439 95466986 - Ptpmt1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018268.1 MGP_C57BL6NJ_G0015834.1 mouse_genomes_project 2 95459439 95466778 - Ptpmt1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018269.1 MGP_C57BL6NJ_G0015834.1 mouse_genomes_project 2 95459720 95466323 - Ptpmt1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018270.1 MGP_C57BL6NJ_G0015834.1 mouse_genomes_project 2 95462764 95466396 - Ptpmt1 processed_transcript processed_transcript MGP_C57BL6NJ_T0099362.1 MGP_C57BL6NJ_G0037420.1 mouse_genomes_project 2 311858 318159 - sense_intronic sense_intronic MGP_C57BL6NJ_T0007476.1 MGP_C57BL6NJ_G0006128.1 mouse_genomes_project 2 123522315 123526194 - Gm29340 lincRNA lincRNA MGP_C57BL6NJ_T0007547.1 MGP_C57BL6NJ_G0006187.1 mouse_genomes_project 2 171042899 171044007 - Gm14228 lincRNA lincRNA MGP_C57BL6NJ_T0010694.1 MGP_C57BL6NJ_G0008779.1 mouse_genomes_project 2 141389482 141389569 + Mir3090 miRNA miRNA MGP_C57BL6NJ_T0014137.1 MGP_C57BL6NJ_G0012182.1 mouse_genomes_project 2 156837545 156838039 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014118.1 MGP_C57BL6NJ_G0012163.1 mouse_genomes_project 2 151809042 151809192 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007581.1 MGP_C57BL6NJ_G0006216.1 mouse_genomes_project 2 180139498 180143461 + Gm14258 lincRNA lincRNA MGP_C57BL6NJ_T0004168.1 MGP_C57BL6NJ_G0003701.1 mouse_genomes_project 2 77125717 77131863 + 4930445N08Rik antisense antisense MGP_C57BL6NJ_T0103040.1 MGP_C57BL6NJ_G0040834.1 mouse_genomes_project 2 92851099 92888951 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001217.1 MGP_C57BL6NJ_G0001123.1 mouse_genomes_project 2 71029369 71033142 + TEC TEC MGP_C57BL6NJ_T0056214.1 MGP_C57BL6NJ_G0026391.1 mouse_genomes_project 2 90223456 90224425 - MGP_C57BL6NJ_P0056214 protein_coding protein_coding MGP_C57BL6NJ_T0100176.1 MGP_C57BL6NJ_G0038222.1 mouse_genomes_project 2 18577568 18577675 + Gm23970 snRNA snRNA MGP_C57BL6NJ_T0007386.1 MGP_C57BL6NJ_G0006057.1 mouse_genomes_project 2 67903132 67958610 + Gm28638 lincRNA lincRNA MGP_C57BL6NJ_T0058448.1 MGP_C57BL6NJ_G0026998.1 mouse_genomes_project 2 152313211 152365010 - MGP_C57BL6NJ_P0058448 Bfsp1 protein_coding protein_coding MGP_C57BL6NJ_T0058449.1 MGP_C57BL6NJ_G0026998.1 mouse_genomes_project 2 152313211 152364780 - MGP_C57BL6NJ_P0058449 Bfsp1 protein_coding protein_coding MGP_C57BL6NJ_T0013831.1 MGP_C57BL6NJ_G0011876.1 mouse_genomes_project 2 39421756 39422239 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099258.1 MGP_C57BL6NJ_G0037322.1 mouse_genomes_project 2 112588267 112588391 + Gm22813 scaRNA scaRNA MGP_C57BL6NJ_T0013976.1 MGP_C57BL6NJ_G0012021.1 mouse_genomes_project 2 91499407 91499876 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004251.1 MGP_C57BL6NJ_G0003756.1 mouse_genomes_project 2 143092227 143138259 - 4930545L23Rik antisense antisense MGP_C57BL6NJ_T0057104.1 MGP_C57BL6NJ_G0026687.1 mouse_genomes_project 2 117736698 117737637 - MGP_C57BL6NJ_P0057104 protein_coding protein_coding MGP_C57BL6NJ_T0100214.1 MGP_C57BL6NJ_G0038260.1 mouse_genomes_project 2 133438869 133438976 - Gm26496 snRNA snRNA MGP_C57BL6NJ_T0018218.1 MGP_C57BL6NJ_G0015799.1 mouse_genomes_project 2 26932995 26938016 - Gm13372 processed_transcript processed_transcript MGP_C57BL6NJ_T0059664.1 MGP_C57BL6NJ_G0027306.1 mouse_genomes_project 2 175394241 175404106 + MGP_C57BL6NJ_P0059664 Mmp9 protein_coding protein_coding MGP_C57BL6NJ_T0059665.1 MGP_C57BL6NJ_G0027306.1 mouse_genomes_project 2 175403430 175411062 + MGP_C57BL6NJ_P0059665 Mmp9 protein_coding protein_coding MGP_C57BL6NJ_T0059666.1 MGP_C57BL6NJ_G0027306.1 mouse_genomes_project 2 175405907 175406474 + Mmp9 protein_coding retained_intron MGP_C57BL6NJ_T0059667.1 MGP_C57BL6NJ_G0027306.1 mouse_genomes_project 2 175409597 175411062 + Mmp9 protein_coding processed_transcript MGP_C57BL6NJ_T0059865.1 MGP_C57BL6NJ_G0027341.1 mouse_genomes_project 2 178519947 178521451 + MGP_C57BL6NJ_P0059865 Cebpb protein_coding protein_coding MGP_C57BL6NJ_T0010601.1 MGP_C57BL6NJ_G0008686.1 mouse_genomes_project 2 8073517 8073644 + Mir669i miRNA miRNA MGP_C57BL6NJ_T0010712.1 MGP_C57BL6NJ_G0008797.1 mouse_genomes_project 2 174702839 174702910 - Mir7678 miRNA miRNA MGP_C57BL6NJ_T0054032.1 MGP_C57BL6NJ_G0025947.1 mouse_genomes_project 2 27662823 27671178 - MGP_C57BL6NJ_P0054032 Spaca9 protein_coding protein_coding MGP_C57BL6NJ_T0054033.1 MGP_C57BL6NJ_G0025947.1 mouse_genomes_project 2 27662827 27671210 - MGP_C57BL6NJ_P0054033 Spaca9 protein_coding protein_coding MGP_C57BL6NJ_T0054034.1 MGP_C57BL6NJ_G0025947.1 mouse_genomes_project 2 27663755 27671254 - Spaca9 protein_coding processed_transcript MGP_C57BL6NJ_T0054035.1 MGP_C57BL6NJ_G0025947.1 mouse_genomes_project 2 27664443 27671201 - Spaca9 protein_coding processed_transcript MGP_C57BL6NJ_T0054212.1 MGP_C57BL6NJ_G0025975.1 mouse_genomes_project 2 29328264 29330841 + MGP_C57BL6NJ_P0054212 Endog protein_coding protein_coding MGP_C57BL6NJ_T0007585.1 MGP_C57BL6NJ_G0006220.1 mouse_genomes_project 2 180530141 180557893 + Gm14249 lincRNA lincRNA MGP_C57BL6NJ_T0055647.1 MGP_C57BL6NJ_G0026233.1 mouse_genomes_project 2 72842466 72843327 - MGP_C57BL6NJ_P0055647 Gm26558 protein_coding protein_coding MGP_C57BL6NJ_T0058900.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163717690 163763396 - MGP_C57BL6NJ_P0058900 Cdk5rap1 protein_coding protein_coding MGP_C57BL6NJ_T0058901.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163717696 163761125 - MGP_C57BL6NJ_P0058901 Cdk5rap1 protein_coding protein_coding MGP_C57BL6NJ_T0058902.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163726069 163761167 - Cdk5rap1 protein_coding processed_transcript MGP_C57BL6NJ_T0058903.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163735739 163739562 - Cdk5rap1 protein_coding retained_intron MGP_C57BL6NJ_T0058904.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163746086 163761137 - MGP_C57BL6NJ_P0058904 Cdk5rap1 protein_coding protein_coding MGP_C57BL6NJ_T0058905.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163754238 163759187 - Cdk5rap1 protein_coding processed_transcript MGP_C57BL6NJ_T0058906.1 MGP_C57BL6NJ_G0027137.1 mouse_genomes_project 2 163759079 163761097 - Cdk5rap1 protein_coding processed_transcript MGP_C57BL6NJ_T0011772.1 MGP_C57BL6NJ_G0009857.1 mouse_genomes_project 2 123512959 123513272 + Gm24914 misc_RNA misc_RNA MGP_C57BL6NJ_T0013977.1 MGP_C57BL6NJ_G0012022.1 mouse_genomes_project 2 91530547 91530840 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055869.1 MGP_C57BL6NJ_G0026281.1 mouse_genomes_project 2 78643651 78660526 - MGP_C57BL6NJ_P0055869 Pde11a protein_coding protein_coding MGP_C57BL6NJ_T0055870.1 MGP_C57BL6NJ_G0026281.1 mouse_genomes_project 2 78644416 79005766 - MGP_C57BL6NJ_P0055870 Pde11a protein_coding protein_coding MGP_C57BL6NJ_T0055871.1 MGP_C57BL6NJ_G0026281.1 mouse_genomes_project 2 78683476 78880474 - MGP_C57BL6NJ_P0055871 Pde11a protein_coding protein_coding MGP_C57BL6NJ_T0004146.1 MGP_C57BL6NJ_G0003688.1 mouse_genomes_project 2 71998557 72000942 + Mettl5os antisense antisense MGP_C57BL6NJ_T0018370.1 MGP_C57BL6NJ_G0015879.1 mouse_genomes_project 2 168555579 168571621 - Gm14204 processed_transcript processed_transcript MGP_C57BL6NJ_T0018371.1 MGP_C57BL6NJ_G0015879.1 mouse_genomes_project 2 168558280 168571685 - Gm14204 processed_transcript processed_transcript MGP_C57BL6NJ_T0018372.1 MGP_C57BL6NJ_G0015879.1 mouse_genomes_project 2 168563887 168571568 - Gm14204 processed_transcript processed_transcript MGP_C57BL6NJ_T0018373.1 MGP_C57BL6NJ_G0015879.1 mouse_genomes_project 2 168564026 168571552 - Gm14204 processed_transcript processed_transcript MGP_C57BL6NJ_T0056804.1 MGP_C57BL6NJ_G0026612.1 mouse_genomes_project 2 107054358 107062165 + Traf6 protein_coding processed_transcript MGP_C57BL6NJ_T0056805.1 MGP_C57BL6NJ_G0026612.1 mouse_genomes_project 2 107054369 107077632 + MGP_C57BL6NJ_P0056805 Traf6 protein_coding protein_coding MGP_C57BL6NJ_T0056806.1 MGP_C57BL6NJ_G0026612.1 mouse_genomes_project 2 107060144 107066010 + Traf6 protein_coding processed_transcript MGP_C57BL6NJ_T0004137.1 MGP_C57BL6NJ_G0003679.1 mouse_genomes_project 2 67250738 67254079 + Gm13595 antisense antisense MGP_C57BL6NJ_T0001157.1 MGP_C57BL6NJ_G0001063.1 mouse_genomes_project 2 8806398 8807317 + TEC TEC MGP_C57BL6NJ_T0007369.1 MGP_C57BL6NJ_G0006042.1 mouse_genomes_project 2 51271399 51275744 + Gm13485 lincRNA lincRNA MGP_C57BL6NJ_T0058857.1 MGP_C57BL6NJ_G0027120.1 mouse_genomes_project 2 162868180 162889312 - MGP_C57BL6NJ_P0058857 Commd7 protein_coding protein_coding MGP_C57BL6NJ_T0058858.1 MGP_C57BL6NJ_G0027120.1 mouse_genomes_project 2 162870185 162889262 - Commd7 protein_coding retained_intron MGP_C57BL6NJ_T0058859.1 MGP_C57BL6NJ_G0027120.1 mouse_genomes_project 2 162870185 162889271 - MGP_C57BL6NJ_P0058859 Commd7 protein_coding protein_coding MGP_C57BL6NJ_T0010588.1 MGP_C57BL6NJ_G0008673.1 mouse_genomes_project 2 8067319 8067428 + Mir297b miRNA miRNA MGP_C57BL6NJ_T0014018.1 MGP_C57BL6NJ_G0012063.1 mouse_genomes_project 2 107724741 107725035 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007481.1 MGP_C57BL6NJ_G0006133.1 mouse_genomes_project 2 124776791 124777388 - Gm29233 lincRNA lincRNA MGP_C57BL6NJ_T0056308.1 MGP_C57BL6NJ_G0026473.1 mouse_genomes_project 2 92601987 92602905 - MGP_C57BL6NJ_P0056308 protein_coding protein_coding MGP_C57BL6NJ_T0059272.1 MGP_C57BL6NJ_G0027201.1 mouse_genomes_project 2 166920427 166986484 - MGP_C57BL6NJ_P0059272 Rbl1 protein_coding protein_coding MGP_C57BL6NJ_T0059273.1 MGP_C57BL6NJ_G0027201.1 mouse_genomes_project 2 166941727 166986506 - Rbl1 protein_coding retained_intron MGP_C57BL6NJ_T0059274.1 MGP_C57BL6NJ_G0027201.1 mouse_genomes_project 2 166949541 166986498 - Rbl1 protein_coding retained_intron MGP_C57BL6NJ_T0059275.1 MGP_C57BL6NJ_G0027201.1 mouse_genomes_project 2 166967854 166971975 - Rbl1 protein_coding retained_intron MGP_C57BL6NJ_T0054681.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32371604 32409227 - MGP_C57BL6NJ_P0054681 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054682.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32371608 32411614 - MGP_C57BL6NJ_P0054682 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054683.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32375979 32388215 - MGP_C57BL6NJ_P0054683 Lrsam1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054684.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32382233 32385185 - Lrsam1 protein_coding retained_intron MGP_C57BL6NJ_T0054685.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32402192 32411599 - MGP_C57BL6NJ_P0054685 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054686.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32402194 32411592 - MGP_C57BL6NJ_P0054686 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054687.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32402207 32407878 - MGP_C57BL6NJ_P0054687 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054688.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32402211 32409223 - MGP_C57BL6NJ_P0054688 Lrsam1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054689.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32405220 32411593 - MGP_C57BL6NJ_P0054689 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054690.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32405227 32411593 - MGP_C57BL6NJ_P0054690 Lrsam1 protein_coding protein_coding MGP_C57BL6NJ_T0054691.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32408218 32411600 - Lrsam1 protein_coding processed_transcript MGP_C57BL6NJ_T0054692.1 MGP_C57BL6NJ_G0026045.1 mouse_genomes_project 2 32409045 32411606 - Lrsam1 protein_coding processed_transcript MGP_C57BL6NJ_T0057320.1 MGP_C57BL6NJ_G0026756.1 mouse_genomes_project 2 125913338 125916405 + MGP_C57BL6NJ_P0057320 Gm14137 protein_coding protein_coding MGP_C57BL6NJ_T0018273.1 MGP_C57BL6NJ_G0015836.1 mouse_genomes_project 2 95770008 95778593 - Gm13783 processed_transcript processed_transcript MGP_C57BL6NJ_T0007523.1 MGP_C57BL6NJ_G0006167.1 mouse_genomes_project 2 157252262 157261788 + Gm14120 lincRNA lincRNA MGP_C57BL6NJ_T0018355.1 MGP_C57BL6NJ_G0015875.1 mouse_genomes_project 2 166346647 166354636 - 4930405A21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018356.1 MGP_C57BL6NJ_G0015875.1 mouse_genomes_project 2 166348059 166354553 - 4930405A21Rik processed_transcript retained_intron MGP_C57BL6NJ_T0059668.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175416013 175420505 + MGP_C57BL6NJ_P0059668 Slc12a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059669.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175416027 175432257 + Slc12a5 protein_coding processed_transcript MGP_C57BL6NJ_T0059670.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175416035 175461903 + MGP_C57BL6NJ_P0059670 Slc12a5 protein_coding protein_coding MGP_C57BL6NJ_T0059671.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175416057 175464056 + MGP_C57BL6NJ_P0059671 Slc12a5 protein_coding protein_coding MGP_C57BL6NJ_T0059672.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175425711 175464065 + MGP_C57BL6NJ_P0059672 Slc12a5 protein_coding protein_coding MGP_C57BL6NJ_T0059673.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175425967 175464061 + MGP_C57BL6NJ_P0059673 Slc12a5 protein_coding protein_coding MGP_C57BL6NJ_T0059674.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175426009 175453253 + MGP_C57BL6NJ_P0059674 Slc12a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059675.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175444155 175449623 + Slc12a5 protein_coding retained_intron MGP_C57BL6NJ_T0059676.1 MGP_C57BL6NJ_G0027307.1 mouse_genomes_project 2 175460924 175464056 + Slc12a5 protein_coding retained_intron MGP_C57BL6NJ_T0014126.1 MGP_C57BL6NJ_G0012171.1 mouse_genomes_project 2 153508355 153509176 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056960.1 MGP_C57BL6NJ_G0026641.1 mouse_genomes_project 2 110346488 110348754 - MGP_C57BL6NJ_P0056960 Pin1rt1 protein_coding protein_coding MGP_C57BL6NJ_T0057917.1 MGP_C57BL6NJ_G0026874.1 mouse_genomes_project 2 134613348 134620510 - MGP_C57BL6NJ_P0057917 Ciao1 protein_coding protein_coding MGP_C57BL6NJ_T0057918.1 MGP_C57BL6NJ_G0026874.1 mouse_genomes_project 2 134615758 134618936 - Ciao1 protein_coding retained_intron MGP_C57BL6NJ_T0057919.1 MGP_C57BL6NJ_G0026874.1 mouse_genomes_project 2 134615885 134620510 - MGP_C57BL6NJ_P0057919 Ciao1 protein_coding protein_coding MGP_C57BL6NJ_T0057920.1 MGP_C57BL6NJ_G0026874.1 mouse_genomes_project 2 134618745 134620510 - MGP_C57BL6NJ_P0057920 Ciao1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007506.1 MGP_C57BL6NJ_G0006153.1 mouse_genomes_project 2 143590987 143595595 + Platr3 lincRNA lincRNA MGP_C57BL6NJ_T0057114.1 MGP_C57BL6NJ_G0026697.1 mouse_genomes_project 2 118183154 118184117 - MGP_C57BL6NJ_P0057114 Olfr1308 protein_coding protein_coding MGP_C57BL6NJ_T0013789.1 MGP_C57BL6NJ_G0011834.1 mouse_genomes_project 2 23221880 23222526 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018295.1 MGP_C57BL6NJ_G0015847.1 mouse_genomes_project 2 119713990 119724455 + Gm13965 processed_transcript processed_transcript MGP_C57BL6NJ_T0056450.1 MGP_C57BL6NJ_G0026556.1 mouse_genomes_project 2 95434915 95438935 - Ndufs3 protein_coding processed_transcript MGP_C57BL6NJ_T0056451.1 MGP_C57BL6NJ_G0026556.1 mouse_genomes_project 2 95434915 95452157 - MGP_C57BL6NJ_P0056451 Ndufs3 protein_coding protein_coding MGP_C57BL6NJ_T0056452.1 MGP_C57BL6NJ_G0026556.1 mouse_genomes_project 2 95438292 95451972 - Ndufs3 protein_coding processed_transcript MGP_C57BL6NJ_T0056453.1 MGP_C57BL6NJ_G0026556.1 mouse_genomes_project 2 95451154 95452032 - Ndufs3 protein_coding processed_transcript MGP_C57BL6NJ_T0058395.1 MGP_C57BL6NJ_G0026983.1 mouse_genomes_project 2 145099631 145140130 - MGP_C57BL6NJ_P0058395 Jag1 protein_coding protein_coding MGP_C57BL6NJ_T0058396.1 MGP_C57BL6NJ_G0026983.1 mouse_genomes_project 2 145102511 145105568 - Jag1 protein_coding retained_intron MGP_C57BL6NJ_T0058317.1 MGP_C57BL6NJ_G0026966.1 mouse_genomes_project 2 140552687 140570735 + MGP_C57BL6NJ_P0058317 Chgb protein_coding protein_coding MGP_C57BL6NJ_T0007462.1 MGP_C57BL6NJ_G0006119.1 mouse_genomes_project 2 120612745 120614007 - Gm29234 lincRNA lincRNA MGP_C57BL6NJ_T0011775.1 MGP_C57BL6NJ_G0009860.1 mouse_genomes_project 2 138327118 138327487 - Gm24893 misc_RNA misc_RNA MGP_C57BL6NJ_T0059609.1 MGP_C57BL6NJ_G0027293.1 mouse_genomes_project 2 175170481 175195941 + MGP_C57BL6NJ_P0059609 Dnttip1 protein_coding protein_coding MGP_C57BL6NJ_T0059610.1 MGP_C57BL6NJ_G0027293.1 mouse_genomes_project 2 175170512 175175893 + MGP_C57BL6NJ_P0059610 Dnttip1 protein_coding protein_coding MGP_C57BL6NJ_T0059611.1 MGP_C57BL6NJ_G0027293.1 mouse_genomes_project 2 175170529 175187379 + MGP_C57BL6NJ_P0059611 Dnttip1 protein_coding protein_coding MGP_C57BL6NJ_T0059612.1 MGP_C57BL6NJ_G0027293.1 mouse_genomes_project 2 175179952 175185378 + Dnttip1 protein_coding retained_intron MGP_C57BL6NJ_T0010724.1 MGP_C57BL6NJ_G0008809.1 mouse_genomes_project 2 192075228 192075297 - Mir7005 miRNA miRNA MGP_C57BL6NJ_T0004115.1 MGP_C57BL6NJ_G0003663.1 mouse_genomes_project 2 38141206 38145607 - Gm13584 antisense antisense MGP_C57BL6NJ_T0056984.1 MGP_C57BL6NJ_G0026649.1 mouse_genomes_project 2 110913843 111067999 + MGP_C57BL6NJ_P0056984 Them7 protein_coding protein_coding MGP_C57BL6NJ_T0056985.1 MGP_C57BL6NJ_G0026649.1 mouse_genomes_project 2 110913865 111067238 + Them7 protein_coding processed_transcript MGP_C57BL6NJ_T0058834.1 MGP_C57BL6NJ_G0027113.1 mouse_genomes_project 2 162426433 162429719 - MGP_C57BL6NJ_P0058834 Tspyl3 protein_coding protein_coding MGP_C57BL6NJ_T0101532.1 MGP_C57BL6NJ_G0039578.1 mouse_genomes_project 2 160071981 160072117 - Gm24199 snoRNA snoRNA MGP_C57BL6NJ_T0058370.1 MGP_C57BL6NJ_G0026978.1 mouse_genomes_project 2 144050183 144381797 - MGP_C57BL6NJ_P0058370 Pak7 protein_coding protein_coding MGP_C57BL6NJ_T0058371.1 MGP_C57BL6NJ_G0026978.1 mouse_genomes_project 2 144050976 144381819 - MGP_C57BL6NJ_P0058371 Pak7 protein_coding protein_coding MGP_C57BL6NJ_T0058372.1 MGP_C57BL6NJ_G0026978.1 mouse_genomes_project 2 144261415 144381826 - Pak7 protein_coding retained_intron MGP_C57BL6NJ_T0056946.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110212371 110294624 + MGP_C57BL6NJ_P0056946 Cstf3 protein_coding protein_coding MGP_C57BL6NJ_T0056947.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110212380 110238252 + Cstf3 protein_coding retained_intron MGP_C57BL6NJ_T0056948.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110212466 110236279 + Cstf3 protein_coding retained_intron MGP_C57BL6NJ_T0056949.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110250391 110294114 + MGP_C57BL6NJ_P0056949 Cstf3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056950.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110284736 110292633 + Cstf3 protein_coding processed_transcript MGP_C57BL6NJ_T0056952.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110292332 110293374 + Cstf3 protein_coding processed_transcript MGP_C57BL6NJ_T0056953.1 MGP_C57BL6NJ_G0026639.1 mouse_genomes_project 2 110292860 110293934 + Cstf3 protein_coding processed_transcript MGP_C57BL6NJ_T0056207.1 MGP_C57BL6NJ_G0026385.1 mouse_genomes_project 2 90001555 90002478 - MGP_C57BL6NJ_P0056207 Olfr1053 protein_coding protein_coding MGP_C57BL6NJ_T0013946.1 MGP_C57BL6NJ_G0011991.1 mouse_genomes_project 2 83525252 83525937 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100227.1 MGP_C57BL6NJ_G0038273.1 mouse_genomes_project 2 162340358 162340461 + Gm25643 snRNA snRNA MGP_C57BL6NJ_T0013849.1 MGP_C57BL6NJ_G0011894.1 mouse_genomes_project 2 49431096 49432067 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057731.1 MGP_C57BL6NJ_G0026832.1 mouse_genomes_project 2 129366876 129370863 + MGP_C57BL6NJ_P0057731 Duoxa2 protein_coding protein_coding MGP_C57BL6NJ_T0053639.1 MGP_C57BL6NJ_G0025870.1 mouse_genomes_project 2 24157040 24187434 - MGP_C57BL6NJ_P0053639 Traf2 protein_coding protein_coding MGP_C57BL6NJ_T0053640.1 MGP_C57BL6NJ_G0025870.1 mouse_genomes_project 2 24157924 24179767 - Traf2 protein_coding retained_intron MGP_C57BL6NJ_T0053641.1 MGP_C57BL6NJ_G0025870.1 mouse_genomes_project 2 24157924 24187404 - MGP_C57BL6NJ_P0053641 Traf2 protein_coding protein_coding MGP_C57BL6NJ_T0014031.1 MGP_C57BL6NJ_G0012076.1 mouse_genomes_project 2 110528013 110528357 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060000.1 MGP_C57BL6NJ_G0027378.1 mouse_genomes_project 2 184627895 184644329 - MGP_C57BL6NJ_P0060000 Zbp1 protein_coding protein_coding MGP_C57BL6NJ_T0060001.1 MGP_C57BL6NJ_G0027378.1 mouse_genomes_project 2 184627898 184644303 - Zbp1 protein_coding retained_intron MGP_C57BL6NJ_T0060002.1 MGP_C57BL6NJ_G0027378.1 mouse_genomes_project 2 184635018 184644316 - MGP_C57BL6NJ_P0060002 Zbp1 protein_coding protein_coding MGP_C57BL6NJ_T0004065.1 MGP_C57BL6NJ_G0003626.1 mouse_genomes_project 2 23776344 23778903 - Gm38287 antisense antisense MGP_C57BL6NJ_T0004206.1 MGP_C57BL6NJ_G0003725.1 mouse_genomes_project 2 119812137 119815493 - Gm13964 antisense antisense MGP_C57BL6NJ_T0054339.1 MGP_C57BL6NJ_G0025993.1 mouse_genomes_project 2 30057047 30062212 - Asb6 protein_coding retained_intron MGP_C57BL6NJ_T0054340.1 MGP_C57BL6NJ_G0025993.1 mouse_genomes_project 2 30057047 30064291 - MGP_C57BL6NJ_P0054340 Asb6 protein_coding protein_coding MGP_C57BL6NJ_T0054341.1 MGP_C57BL6NJ_G0025993.1 mouse_genomes_project 2 30058420 30062223 - MGP_C57BL6NJ_P0054341 Asb6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054342.1 MGP_C57BL6NJ_G0025993.1 mouse_genomes_project 2 30059113 30062249 - Asb6 protein_coding retained_intron MGP_C57BL6NJ_T0054343.1 MGP_C57BL6NJ_G0025993.1 mouse_genomes_project 2 30059417 30061452 - Asb6 protein_coding retained_intron MGP_C57BL6NJ_T0055507.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68066174 68112939 - MGP_C57BL6NJ_P0055507 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055508.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68066177 68219971 - MGP_C57BL6NJ_P0055508 protein_coding protein_coding MGP_C57BL6NJ_T0055509.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68066178 68245385 - MGP_C57BL6NJ_P0055509 protein_coding protein_coding MGP_C57BL6NJ_T0055510.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68066180 68151831 - MGP_C57BL6NJ_P0055510 protein_coding protein_coding MGP_C57BL6NJ_T0055511.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68068281 68151813 - MGP_C57BL6NJ_P0055511 protein_coding protein_coding MGP_C57BL6NJ_T0055512.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68068288 68113132 - MGP_C57BL6NJ_P0055512 protein_coding protein_coding MGP_C57BL6NJ_T0055513.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68120995 68245388 - MGP_C57BL6NJ_P0055513 protein_coding protein_coding MGP_C57BL6NJ_T0055514.1 MGP_C57BL6NJ_G0026202.1 mouse_genomes_project 2 68149008 68245362 - protein_coding retained_intron MGP_C57BL6NJ_T0054784.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34353329 34377551 - MGP_C57BL6NJ_P0054784 Rabepk protein_coding protein_coding MGP_C57BL6NJ_T0054785.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34353660 34375577 - MGP_C57BL6NJ_P0054785 Rabepk protein_coding protein_coding MGP_C57BL6NJ_T0054786.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34354990 34377257 - MGP_C57BL6NJ_P0054786 Rabepk protein_coding protein_coding MGP_C57BL6NJ_T0054787.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34355201 34372941 - MGP_C57BL6NJ_P0054787 Rabepk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054788.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34360316 34377503 - MGP_C57BL6NJ_P0054788 Rabepk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054789.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34360708 34377540 - MGP_C57BL6NJ_P0054789 Rabepk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054790.1 MGP_C57BL6NJ_G0026059.1 mouse_genomes_project 2 34361180 34377393 - Rabepk protein_coding retained_intron MGP_C57BL6NJ_T0057231.1 MGP_C57BL6NJ_G0026735.1 mouse_genomes_project 2 125072580 125115476 + MGP_C57BL6NJ_P0057231 Eif2ak4 protein_coding protein_coding MGP_C57BL6NJ_T0057232.1 MGP_C57BL6NJ_G0026735.1 mouse_genomes_project 2 125072671 125165959 + MGP_C57BL6NJ_P0057232 Eif2ak4 protein_coding protein_coding MGP_C57BL6NJ_T0057233.1 MGP_C57BL6NJ_G0026735.1 mouse_genomes_project 2 125072809 125165951 + MGP_C57BL6NJ_P0057233 Eif2ak4 protein_coding protein_coding MGP_C57BL6NJ_T0057234.1 MGP_C57BL6NJ_G0026735.1 mouse_genomes_project 2 125126081 125139703 + MGP_C57BL6NJ_P0057234 Eif2ak4 protein_coding protein_coding MGP_C57BL6NJ_T0057235.1 MGP_C57BL6NJ_G0026735.1 mouse_genomes_project 2 125144572 125150733 + Eif2ak4 protein_coding processed_transcript MGP_C57BL6NJ_T0058818.1 MGP_C57BL6NJ_G0027110.1 mouse_genomes_project 2 162247890 162265818 + Ccm2l protein_coding processed_transcript MGP_C57BL6NJ_T0058819.1 MGP_C57BL6NJ_G0027110.1 mouse_genomes_project 2 162247919 162253079 + Ccm2l protein_coding processed_transcript MGP_C57BL6NJ_T0058820.1 MGP_C57BL6NJ_G0027110.1 mouse_genomes_project 2 162247933 162252886 + MGP_C57BL6NJ_P0058820 Ccm2l protein_coding protein_coding MGP_C57BL6NJ_T0058821.1 MGP_C57BL6NJ_G0027110.1 mouse_genomes_project 2 162247942 162265296 + MGP_C57BL6NJ_P0058821 Ccm2l protein_coding protein_coding MGP_C57BL6NJ_T0007525.1 MGP_C57BL6NJ_G0006169.1 mouse_genomes_project 2 158646112 158706113 - Gm14133 lincRNA lincRNA MGP_C57BL6NJ_T0007526.1 MGP_C57BL6NJ_G0006169.1 mouse_genomes_project 2 158656050 158706155 - Gm14133 lincRNA lincRNA MGP_C57BL6NJ_T0014112.1 MGP_C57BL6NJ_G0012157.1 mouse_genomes_project 2 149270456 149270941 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018203.1 MGP_C57BL6NJ_G0015791.1 mouse_genomes_project 2 17660235 17661559 + 1810010K12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018204.1 MGP_C57BL6NJ_G0015791.1 mouse_genomes_project 2 17660877 17663403 + 1810010K12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0057683.1 MGP_C57BL6NJ_G0026819.1 mouse_genomes_project 2 128492196 128538003 + MGP_C57BL6NJ_P0057683 Wdr76 protein_coding protein_coding MGP_C57BL6NJ_T0057684.1 MGP_C57BL6NJ_G0026819.1 mouse_genomes_project 2 128492256 128539460 + MGP_C57BL6NJ_P0057684 Wdr76 protein_coding protein_coding MGP_C57BL6NJ_T0057685.1 MGP_C57BL6NJ_G0026819.1 mouse_genomes_project 2 128495321 128537608 + MGP_C57BL6NJ_P0057685 Wdr76 protein_coding protein_coding MGP_C57BL6NJ_T0007550.1 MGP_C57BL6NJ_G0006190.1 mouse_genomes_project 2 171479226 171480166 + Gm14241 lincRNA lincRNA MGP_C57BL6NJ_T0014152.1 MGP_C57BL6NJ_G0012197.1 mouse_genomes_project 2 161596581 161597064 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100178.1 MGP_C57BL6NJ_G0038224.1 mouse_genomes_project 2 23613701 23613805 - Gm24875 snRNA snRNA MGP_C57BL6NJ_T0056367.1 MGP_C57BL6NJ_G0026521.1 mouse_genomes_project 2 93915208 93916132 - MGP_C57BL6NJ_P0056367 Olfr1245 protein_coding protein_coding MGP_C57BL6NJ_T0100188.1 MGP_C57BL6NJ_G0038234.1 mouse_genomes_project 2 38888112 38888219 + Gm26127 snRNA snRNA MGP_C57BL6NJ_T0056828.1 MGP_C57BL6NJ_G0026618.1 mouse_genomes_project 2 107985620 108078166 + MGP_C57BL6NJ_P0056828 Pamr1 protein_coding protein_coding MGP_C57BL6NJ_T0056829.1 MGP_C57BL6NJ_G0026618.1 mouse_genomes_project 2 107985678 107993635 + Pamr1 protein_coding processed_transcript MGP_C57BL6NJ_T0056830.1 MGP_C57BL6NJ_G0026618.1 mouse_genomes_project 2 107985757 108070828 + Pamr1 protein_coding retained_intron MGP_C57BL6NJ_T0056831.1 MGP_C57BL6NJ_G0026618.1 mouse_genomes_project 2 108071204 108075912 + Pamr1 protein_coding retained_intron MGP_C57BL6NJ_T0058715.1 MGP_C57BL6NJ_G0027071.1 mouse_genomes_project 2 160979431 161015391 + MGP_C57BL6NJ_P0058715 Angpt4 protein_coding protein_coding MGP_C57BL6NJ_T0059493.1 MGP_C57BL6NJ_G0027248.1 mouse_genomes_project 2 173786839 173829715 + MGP_C57BL6NJ_P0059493 Hnf4a protein_coding protein_coding MGP_C57BL6NJ_T0059494.1 MGP_C57BL6NJ_G0027248.1 mouse_genomes_project 2 173820383 173837902 + Hnf4a protein_coding processed_transcript MGP_C57BL6NJ_T0059495.1 MGP_C57BL6NJ_G0027248.1 mouse_genomes_project 2 173820753 173852880 + MGP_C57BL6NJ_P0059495 Hnf4a protein_coding protein_coding MGP_C57BL6NJ_T0059496.1 MGP_C57BL6NJ_G0027248.1 mouse_genomes_project 2 173820754 173852875 + MGP_C57BL6NJ_P0059496 Hnf4a protein_coding protein_coding MGP_C57BL6NJ_T0059497.1 MGP_C57BL6NJ_G0027248.1 mouse_genomes_project 2 173823649 173837901 + MGP_C57BL6NJ_P0059497 Hnf4a protein_coding protein_coding MGP_C57BL6NJ_T0057252.1 MGP_C57BL6NJ_G0026739.1 mouse_genomes_project 2 125368523 125403168 + MGP_C57BL6NJ_P0057252 Pak6 protein_coding protein_coding MGP_C57BL6NJ_T0057253.1 MGP_C57BL6NJ_G0026739.1 mouse_genomes_project 2 125368982 125370177 + Pak6 protein_coding retained_intron MGP_C57BL6NJ_T0057254.1 MGP_C57BL6NJ_G0026739.1 mouse_genomes_project 2 125369284 125382952 + Pak6 protein_coding processed_transcript MGP_C57BL6NJ_T0057255.1 MGP_C57BL6NJ_G0026739.1 mouse_genomes_project 2 125382410 125403166 + MGP_C57BL6NJ_P0057255 Pak6 protein_coding protein_coding MGP_C57BL6NJ_T0057256.1 MGP_C57BL6NJ_G0026739.1 mouse_genomes_project 2 125382444 125402388 + Pak6 protein_coding retained_intron MGP_C57BL6NJ_T0010709.1 MGP_C57BL6NJ_G0008794.1 mouse_genomes_project 2 169052729 169052822 + Gm44319 miRNA miRNA MGP_C57BL6NJ_T0013853.1 MGP_C57BL6NJ_G0011898.1 mouse_genomes_project 2 51126436 51126718 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010652.1 MGP_C57BL6NJ_G0008737.1 mouse_genomes_project 2 77250946 77251083 - Gm44463 miRNA miRNA MGP_C57BL6NJ_T0054567.1 MGP_C57BL6NJ_G0026024.1 mouse_genomes_project 2 31794692 31806529 + MGP_C57BL6NJ_P0054567 Ptges2 protein_coding protein_coding MGP_C57BL6NJ_T0054568.1 MGP_C57BL6NJ_G0026024.1 mouse_genomes_project 2 31795236 31801425 + MGP_C57BL6NJ_P0054568 Ptges2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054569.1 MGP_C57BL6NJ_G0026024.1 mouse_genomes_project 2 31796276 31801978 + Ptges2 protein_coding retained_intron MGP_C57BL6NJ_T0013898.1 MGP_C57BL6NJ_G0011943.1 mouse_genomes_project 2 66229564 66230342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013882.1 MGP_C57BL6NJ_G0011927.1 mouse_genomes_project 2 60276844 60278677 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007401.1 MGP_C57BL6NJ_G0006069.1 mouse_genomes_project 2 76638788 76641871 - lincRNA lincRNA MGP_C57BL6NJ_T0101491.1 MGP_C57BL6NJ_G0039537.1 mouse_genomes_project 2 58933616 58933767 - Gm25388 snoRNA snoRNA MGP_C57BL6NJ_T0018316.1 MGP_C57BL6NJ_G0015856.1 mouse_genomes_project 2 129773194 129775274 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018317.1 MGP_C57BL6NJ_G0015856.1 mouse_genomes_project 2 129773215 129786740 + processed_transcript processed_transcript MGP_C57BL6NJ_T0101472.1 MGP_C57BL6NJ_G0039518.1 mouse_genomes_project 2 25725903 25725977 + Gm22879 snoRNA snoRNA MGP_C57BL6NJ_T0101514.1 MGP_C57BL6NJ_G0039560.1 mouse_genomes_project 2 127948974 127949188 + Gm22865 snoRNA snoRNA MGP_C57BL6NJ_T0018388.1 MGP_C57BL6NJ_G0015890.1 mouse_genomes_project 2 186415087 186417678 - Gm14617 processed_transcript retained_intron MGP_C57BL6NJ_T0018389.1 MGP_C57BL6NJ_G0015890.1 mouse_genomes_project 2 186415214 186420218 - Gm14617 processed_transcript lincRNA MGP_C57BL6NJ_T0018390.1 MGP_C57BL6NJ_G0015890.1 mouse_genomes_project 2 186417100 186420095 - Gm14617 processed_transcript lincRNA MGP_C57BL6NJ_T0056338.1 MGP_C57BL6NJ_G0026499.1 mouse_genomes_project 2 93330463 93331399 - MGP_C57BL6NJ_P0056338 Olfr1216 protein_coding protein_coding MGP_C57BL6NJ_T0100193.1 MGP_C57BL6NJ_G0038239.1 mouse_genomes_project 2 65016412 65016519 - Gm23503 snRNA snRNA MGP_C57BL6NJ_T0004167.1 MGP_C57BL6NJ_G0003700.1 mouse_genomes_project 2 76151467 76153461 + Chn1os1 antisense antisense MGP_C57BL6NJ_T0018235.1 MGP_C57BL6NJ_G0015809.1 mouse_genomes_project 2 38470688 38474702 + Gm13587 processed_transcript processed_transcript MGP_C57BL6NJ_T0055764.1 MGP_C57BL6NJ_G0026254.1 mouse_genomes_project 2 75745019 75774610 - MGP_C57BL6NJ_P0055764 Cir1 protein_coding protein_coding MGP_C57BL6NJ_T0055765.1 MGP_C57BL6NJ_G0026254.1 mouse_genomes_project 2 75767827 75774475 - Cir1 protein_coding processed_transcript MGP_C57BL6NJ_T0058978.1 MGP_C57BL6NJ_G0027155.1 mouse_genomes_project 2 164777240 164779017 + MGP_C57BL6NJ_P0058978 Map1lc3a protein_coding protein_coding MGP_C57BL6NJ_T0058979.1 MGP_C57BL6NJ_G0027155.1 mouse_genomes_project 2 164777486 164779014 + Map1lc3a protein_coding processed_transcript MGP_C57BL6NJ_T0058980.1 MGP_C57BL6NJ_G0027155.1 mouse_genomes_project 2 164777832 164779012 + Map1lc3a protein_coding processed_transcript MGP_C57BL6NJ_T0052931.1 MGP_C57BL6NJ_G0025749.1 mouse_genomes_project 2 7413164 7415834 + MGP_C57BL6NJ_P0052931 4930412O13Rik protein_coding protein_coding MGP_C57BL6NJ_T0052932.1 MGP_C57BL6NJ_G0025749.1 mouse_genomes_project 2 7414548 7415248 + MGP_C57BL6NJ_P0052932 4930412O13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060116.1 MGP_C57BL6NJ_G0027408.1 mouse_genomes_project 2 192012131 192058154 + MGP_C57BL6NJ_P0060116 Osbpl2 protein_coding protein_coding MGP_C57BL6NJ_T0060117.1 MGP_C57BL6NJ_G0027408.1 mouse_genomes_project 2 192012160 192031399 + Osbpl2 protein_coding processed_transcript MGP_C57BL6NJ_T0060118.1 MGP_C57BL6NJ_G0027408.1 mouse_genomes_project 2 192012229 192054766 + Osbpl2 protein_coding retained_intron MGP_C57BL6NJ_T0060119.1 MGP_C57BL6NJ_G0027408.1 mouse_genomes_project 2 192043728 192045758 + Osbpl2 protein_coding retained_intron MGP_C57BL6NJ_T0054107.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28861549 28871992 + MGP_C57BL6NJ_P0054107 Coq4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054108.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28862276 28870659 + MGP_C57BL6NJ_P0054108 Coq4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054109.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28862315 28871800 + MGP_C57BL6NJ_P0054109 Coq4 protein_coding protein_coding MGP_C57BL6NJ_T0054110.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28862327 28870059 + MGP_C57BL6NJ_P0054110 Coq4 protein_coding protein_coding MGP_C57BL6NJ_T0054111.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28864033 28864695 + Coq4 protein_coding retained_intron MGP_C57BL6NJ_T0054112.1 MGP_C57BL6NJ_G0025961.1 mouse_genomes_project 2 28869621 28871043 + Coq4 protein_coding retained_intron MGP_C57BL6NJ_T0056694.1 MGP_C57BL6NJ_G0026590.1 mouse_genomes_project 2 97103271 97110311 - MGP_C57BL6NJ_P0056694 Slc35c1 protein_coding protein_coding MGP_C57BL6NJ_T0056695.1 MGP_C57BL6NJ_G0026590.1 mouse_genomes_project 2 97103274 97111055 - MGP_C57BL6NJ_P0056695 Slc35c1 protein_coding protein_coding MGP_C57BL6NJ_T0056696.1 MGP_C57BL6NJ_G0026590.1 mouse_genomes_project 2 97109202 97110226 - MGP_C57BL6NJ_P0056696 Slc35c1 protein_coding protein_coding MGP_C57BL6NJ_T0057369.1 MGP_C57BL6NJ_G0026771.1 mouse_genomes_project 2 126559689 126568545 + MGP_C57BL6NJ_P0057369 Itpka protein_coding protein_coding MGP_C57BL6NJ_T0056690.1 MGP_C57BL6NJ_G0026589.1 mouse_genomes_project 2 97049967 97080352 - MGP_C57BL6NJ_P0056690 Cry2 protein_coding protein_coding MGP_C57BL6NJ_T0056691.1 MGP_C57BL6NJ_G0026589.1 mouse_genomes_project 2 97057581 97080345 - MGP_C57BL6NJ_P0056691 Cry2 protein_coding protein_coding MGP_C57BL6NJ_T0056692.1 MGP_C57BL6NJ_G0026589.1 mouse_genomes_project 2 97071475 97080345 - Cry2 protein_coding processed_transcript MGP_C57BL6NJ_T0056693.1 MGP_C57BL6NJ_G0026589.1 mouse_genomes_project 2 97073225 97078700 - Cry2 protein_coding processed_transcript MGP_C57BL6NJ_T0100180.1 MGP_C57BL6NJ_G0038226.1 mouse_genomes_project 2 23956946 23957041 + Gm25220 snRNA snRNA MGP_C57BL6NJ_T0056197.1 MGP_C57BL6NJ_G0026375.1 mouse_genomes_project 2 89753137 89755857 - MGP_C57BL6NJ_P0056197 Olfr1042 protein_coding protein_coding MGP_C57BL6NJ_T0059345.1 MGP_C57BL6NJ_G0027215.1 mouse_genomes_project 2 168181888 168211674 + MGP_C57BL6NJ_P0059345 Bpi protein_coding protein_coding MGP_C57BL6NJ_T0059346.1 MGP_C57BL6NJ_G0027215.1 mouse_genomes_project 2 168181888 168211538 + MGP_C57BL6NJ_P0059346 Bpi protein_coding protein_coding MGP_C57BL6NJ_T0059347.1 MGP_C57BL6NJ_G0027215.1 mouse_genomes_project 2 168181888 168211677 + MGP_C57BL6NJ_P0059347 Bpi protein_coding protein_coding MGP_C57BL6NJ_T0014096.1 MGP_C57BL6NJ_G0012141.1 mouse_genomes_project 2 139599290 139600164 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054181.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29185945 29204160 + MGP_C57BL6NJ_P0054181 Pkn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0054182.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29187815 29191257 + MGP_C57BL6NJ_P0054182 Pkn3 protein_coding protein_coding MGP_C57BL6NJ_T0054183.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29187874 29204438 + Pkn3 protein_coding retained_intron MGP_C57BL6NJ_T0054184.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29188344 29190114 + MGP_C57BL6NJ_P0054184 Pkn3 protein_coding protein_coding MGP_C57BL6NJ_T0054185.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29188715 29204444 + MGP_C57BL6NJ_P0054185 Pkn3 protein_coding protein_coding MGP_C57BL6NJ_T0054186.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29188829 29196789 + Pkn3 protein_coding retained_intron MGP_C57BL6NJ_T0054187.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29188885 29204447 + Pkn3 protein_coding retained_intron MGP_C57BL6NJ_T0054188.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29190982 29193353 + Pkn3 protein_coding retained_intron MGP_C57BL6NJ_T0054189.1 MGP_C57BL6NJ_G0025970.1 mouse_genomes_project 2 29195894 29198278 + Pkn3 protein_coding retained_intron MGP_C57BL6NJ_T0055610.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71973095 71983324 + MGP_C57BL6NJ_P0055610 Ssb protein_coding protein_coding MGP_C57BL6NJ_T0055611.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71973095 71983384 + MGP_C57BL6NJ_P0055611 Ssb protein_coding protein_coding MGP_C57BL6NJ_T0055612.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71973156 71983048 + MGP_C57BL6NJ_P0055612 Ssb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055613.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71973219 71979090 + MGP_C57BL6NJ_P0055613 Ssb protein_coding protein_coding MGP_C57BL6NJ_T0055614.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71974828 71980688 + Ssb protein_coding processed_transcript MGP_C57BL6NJ_T0055615.1 MGP_C57BL6NJ_G0026226.1 mouse_genomes_project 2 71980316 71983048 + MGP_C57BL6NJ_P0055615 Ssb protein_coding protein_coding MGP_C57BL6NJ_T0058261.1 MGP_C57BL6NJ_G0026955.1 mouse_genomes_project 2 139605132 139623767 + MGP_C57BL6NJ_P0058261 Prnp protein_coding protein_coding MGP_C57BL6NJ_T0058262.1 MGP_C57BL6NJ_G0026955.1 mouse_genomes_project 2 139605146 139613363 + Prnp protein_coding processed_transcript MGP_C57BL6NJ_T0057968.1 MGP_C57BL6NJ_G0026887.1 mouse_genomes_project 2 135104864 135133500 - MGP_C57BL6NJ_P0057968 Mall protein_coding protein_coding MGP_C57BL6NJ_T0058017.1 MGP_C57BL6NJ_G0026901.1 mouse_genomes_project 2 136468091 136526869 + MGP_C57BL6NJ_P0058017 Zc3h6 protein_coding protein_coding MGP_C57BL6NJ_T0058018.1 MGP_C57BL6NJ_G0026901.1 mouse_genomes_project 2 136468098 136501490 + MGP_C57BL6NJ_P0058018 Zc3h6 protein_coding protein_coding MGP_C57BL6NJ_T0055599.1 MGP_C57BL6NJ_G0026223.1 mouse_genomes_project 2 71861765 71894887 - MGP_C57BL6NJ_P0055599 Ccdc173 protein_coding protein_coding MGP_C57BL6NJ_T0055600.1 MGP_C57BL6NJ_G0026223.1 mouse_genomes_project 2 71886518 71887582 - Ccdc173 protein_coding processed_transcript MGP_C57BL6NJ_T0059960.1 MGP_C57BL6NJ_G0027366.1 mouse_genomes_project 2 183702952 183708342 + MGP_C57BL6NJ_P0059960 Cstf1 protein_coding protein_coding MGP_C57BL6NJ_T0059961.1 MGP_C57BL6NJ_G0027366.1 mouse_genomes_project 2 183703005 183714680 + MGP_C57BL6NJ_P0059961 Cstf1 protein_coding protein_coding MGP_C57BL6NJ_T0010634.1 MGP_C57BL6NJ_G0008719.1 mouse_genomes_project 2 32110995 32111132 - Mir8093 miRNA miRNA MGP_C57BL6NJ_T0018324.1 MGP_C57BL6NJ_G0015858.1 mouse_genomes_project 2 132392097 132401719 - Gm14004 processed_transcript processed_transcript MGP_C57BL6NJ_T0057108.1 MGP_C57BL6NJ_G0026691.1 mouse_genomes_project 2 117865738 117866677 + MGP_C57BL6NJ_P0057108 protein_coding protein_coding MGP_C57BL6NJ_T0058373.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144502026 144515632 + Ankef1 protein_coding processed_transcript MGP_C57BL6NJ_T0058374.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144502071 144506864 + Ankef1 protein_coding processed_transcript MGP_C57BL6NJ_T0058375.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144502107 144553083 + MGP_C57BL6NJ_P0058375 Ankef1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058376.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144502297 144514331 + Ankef1 protein_coding processed_transcript MGP_C57BL6NJ_T0058377.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144515631 144558706 + MGP_C57BL6NJ_P0058377 Ankef1 protein_coding protein_coding MGP_C57BL6NJ_T0058378.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144515635 144551781 + MGP_C57BL6NJ_P0058378 Ankef1 protein_coding protein_coding MGP_C57BL6NJ_T0058379.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144530698 144564969 + MGP_C57BL6NJ_P0058379 Ankef1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058380.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144530766 144558843 + MGP_C57BL6NJ_P0058380 Ankef1 protein_coding protein_coding MGP_C57BL6NJ_T0058381.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144555796 144556592 + Ankef1 protein_coding processed_transcript MGP_C57BL6NJ_T0058382.1 MGP_C57BL6NJ_G0026979.1 mouse_genomes_project 2 144555811 144558766 + Ankef1 protein_coding processed_transcript MGP_C57BL6NJ_T0099080.1 MGP_C57BL6NJ_G0037144.1 mouse_genomes_project 2 126436894 126437013 + n-R5s204 rRNA rRNA MGP_C57BL6NJ_T0056198.1 MGP_C57BL6NJ_G0026376.1 mouse_genomes_project 2 89754357 89755294 - MGP_C57BL6NJ_P0056198 protein_coding protein_coding MGP_C57BL6NJ_T0007508.1 MGP_C57BL6NJ_G0006155.1 mouse_genomes_project 2 143768884 143769867 - Gm14210 lincRNA lincRNA MGP_C57BL6NJ_T0004214.1 MGP_C57BL6NJ_G0003729.1 mouse_genomes_project 2 123383130 123416738 - Gm13990 antisense antisense MGP_C57BL6NJ_T0004216.1 MGP_C57BL6NJ_G0003731.1 mouse_genomes_project 2 125452745 125455798 + Inafm2 antisense antisense MGP_C57BL6NJ_T0055968.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82238857 82248229 - MGP_C57BL6NJ_P0055968 Cerkl protein_coding protein_coding MGP_C57BL6NJ_T0055969.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240066 82346788 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055970.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240816 82241996 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055971.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240844 82346725 - MGP_C57BL6NJ_P0055971 Cerkl protein_coding protein_coding MGP_C57BL6NJ_T0055972.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240907 82346741 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055973.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240907 82346725 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055974.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82240909 82346831 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055975.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82248194 82377873 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055976.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82253833 82281451 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055977.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82265388 82281476 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055978.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82300299 82304700 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0055979.1 MGP_C57BL6NJ_G0026296.1 mouse_genomes_project 2 82302408 82307461 - Cerkl protein_coding processed_transcript MGP_C57BL6NJ_T0058524.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507639 154521727 + MGP_C57BL6NJ_P0058524 Naa20 protein_coding protein_coding MGP_C57BL6NJ_T0058525.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507651 154519798 + MGP_C57BL6NJ_P0058525 Naa20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058526.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507655 154519804 + MGP_C57BL6NJ_P0058526 Naa20 protein_coding protein_coding MGP_C57BL6NJ_T0058527.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507660 154519878 + MGP_C57BL6NJ_P0058527 Naa20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058528.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507692 154514651 + MGP_C57BL6NJ_P0058528 Naa20 protein_coding protein_coding MGP_C57BL6NJ_T0058529.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507695 154516245 + Naa20 protein_coding retained_intron MGP_C57BL6NJ_T0058530.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154507708 154520293 + MGP_C57BL6NJ_P0058530 Naa20 protein_coding protein_coding MGP_C57BL6NJ_T0058531.1 MGP_C57BL6NJ_G0027016.1 mouse_genomes_project 2 154516146 154519981 + Naa20 protein_coding retained_intron MGP_C57BL6NJ_T0056111.1 MGP_C57BL6NJ_G0026328.1 mouse_genomes_project 2 88141534 88153024 + MGP_C57BL6NJ_P0056111 protein_coding protein_coding MGP_C57BL6NJ_T0056112.1 MGP_C57BL6NJ_G0026328.1 mouse_genomes_project 2 88141609 88155679 + MGP_C57BL6NJ_P0056112 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056113.1 MGP_C57BL6NJ_G0026328.1 mouse_genomes_project 2 88149335 88157763 + protein_coding processed_transcript MGP_C57BL6NJ_T0056114.1 MGP_C57BL6NJ_G0026328.1 mouse_genomes_project 2 88152861 88155757 + protein_coding retained_intron MGP_C57BL6NJ_T0013921.1 MGP_C57BL6NJ_G0011966.1 mouse_genomes_project 2 75019229 75021881 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060252.1 MGP_C57BL6NJ_G0027437.1 mouse_genomes_project 2 193223537 193238649 - MGP_C57BL6NJ_P0060252 Helz2 protein_coding protein_coding MGP_C57BL6NJ_T0060253.1 MGP_C57BL6NJ_G0027437.1 mouse_genomes_project 2 193223538 193238647 - MGP_C57BL6NJ_P0060253 Helz2 protein_coding protein_coding MGP_C57BL6NJ_T0060254.1 MGP_C57BL6NJ_G0027437.1 mouse_genomes_project 2 193223541 193238585 - MGP_C57BL6NJ_P0060254 Helz2 protein_coding protein_coding MGP_C57BL6NJ_T0060255.1 MGP_C57BL6NJ_G0027437.1 mouse_genomes_project 2 193223544 193232392 - Helz2 protein_coding retained_intron MGP_C57BL6NJ_T0060256.1 MGP_C57BL6NJ_G0027437.1 mouse_genomes_project 2 193233794 193238647 - Helz2 protein_coding retained_intron MGP_C57BL6NJ_T0103047.1 MGP_C57BL6NJ_G0040841.1 mouse_genomes_project 2 94888212 94945715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058922.1 MGP_C57BL6NJ_G0027141.1 mouse_genomes_project 2 163953134 163955828 + 1700003F12Rik protein_coding retained_intron MGP_C57BL6NJ_T0058924.1 MGP_C57BL6NJ_G0027141.1 mouse_genomes_project 2 163954897 163956013 + MGP_C57BL6NJ_P0058924 1700003F12Rik protein_coding protein_coding MGP_C57BL6NJ_T0058925.1 MGP_C57BL6NJ_G0027141.1 mouse_genomes_project 2 163954936 163956013 + MGP_C57BL6NJ_P0058925 1700003F12Rik protein_coding protein_coding MGP_C57BL6NJ_T0007394.1 MGP_C57BL6NJ_G0006065.1 mouse_genomes_project 2 75093562 75131256 + 8430437L04Rik lincRNA lincRNA MGP_C57BL6NJ_T0014128.1 MGP_C57BL6NJ_G0012173.1 mouse_genomes_project 2 154306338 154306650 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053355.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22878618 22906427 + MGP_C57BL6NJ_P0053355 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053356.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22878648 22927061 + MGP_C57BL6NJ_P0053356 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053357.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22897500 22920836 + MGP_C57BL6NJ_P0053357 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053358.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22897503 22906580 + MGP_C57BL6NJ_P0053358 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053359.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22897504 22909489 + Psd4 protein_coding processed_transcript MGP_C57BL6NJ_T0053360.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22897521 22906474 + MGP_C57BL6NJ_P0053360 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053361.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22898737 22906760 + MGP_C57BL6NJ_P0053361 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053362.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22898785 22920307 + MGP_C57BL6NJ_P0053362 Psd4 protein_coding protein_coding MGP_C57BL6NJ_T0053363.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22913142 22915359 + MGP_C57BL6NJ_P0053363 Psd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053364.1 MGP_C57BL6NJ_G0025826.1 mouse_genomes_project 2 22917735 22919114 + Psd4 protein_coding retained_intron MGP_C57BL6NJ_T0058963.1 MGP_C57BL6NJ_G0027152.1 mouse_genomes_project 2 164536815 164551524 - MGP_C57BL6NJ_P0058963 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058964.1 MGP_C57BL6NJ_G0027152.1 mouse_genomes_project 2 164541155 164551524 - MGP_C57BL6NJ_P0058964 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058965.1 MGP_C57BL6NJ_G0027152.1 mouse_genomes_project 2 164542749 164551537 - MGP_C57BL6NJ_P0058965 protein_coding protein_coding MGP_C57BL6NJ_T0058966.1 MGP_C57BL6NJ_G0027152.1 mouse_genomes_project 2 164545655 164551537 - protein_coding retained_intron MGP_C57BL6NJ_T0013816.1 MGP_C57BL6NJ_G0011861.1 mouse_genomes_project 2 36434541 36435114 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055829.1 MGP_C57BL6NJ_G0026265.1 mouse_genomes_project 2 77223341 77226034 + MGP_C57BL6NJ_P0055829 Hoxd12 protein_coding protein_coding MGP_C57BL6NJ_T0013820.1 MGP_C57BL6NJ_G0011865.1 mouse_genomes_project 2 36925957 36926980 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055882.1 MGP_C57BL6NJ_G0026285.1 mouse_genomes_project 2 79308037 79327195 - MGP_C57BL6NJ_P0055882 Prkra protein_coding protein_coding MGP_C57BL6NJ_T0055883.1 MGP_C57BL6NJ_G0026285.1 mouse_genomes_project 2 79315974 79319913 - Prkra protein_coding processed_transcript MGP_C57BL6NJ_T0057121.1 MGP_C57BL6NJ_G0026704.1 mouse_genomes_project 2 118361748 118362801 - MGP_C57BL6NJ_P0057121 protein_coding protein_coding MGP_C57BL6NJ_T0010604.1 MGP_C57BL6NJ_G0008689.1 mouse_genomes_project 2 14930362 14930472 - Gm24933 miRNA miRNA MGP_C57BL6NJ_T0013829.1 MGP_C57BL6NJ_G0011874.1 mouse_genomes_project 2 39115197 39115513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007360.1 MGP_C57BL6NJ_G0006034.1 mouse_genomes_project 2 45551082 45566034 + Gm28643 lincRNA lincRNA MGP_C57BL6NJ_T0013920.1 MGP_C57BL6NJ_G0011965.1 mouse_genomes_project 2 74948165 74948507 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059193.1 MGP_C57BL6NJ_G0027186.1 mouse_genomes_project 2 165914777 165915635 - MGP_C57BL6NJ_P0059193 Scand1 protein_coding protein_coding MGP_C57BL6NJ_T0058766.1 MGP_C57BL6NJ_G0027096.1 mouse_genomes_project 2 161755669 161756367 - MGP_C57BL6NJ_P0058766 Defb25 protein_coding protein_coding MGP_C57BL6NJ_T0056286.1 MGP_C57BL6NJ_G0026452.1 mouse_genomes_project 2 91924596 91925553 + MGP_C57BL6NJ_P0056286 Olfr1153 protein_coding protein_coding MGP_C57BL6NJ_T0013947.1 MGP_C57BL6NJ_G0011992.1 mouse_genomes_project 2 83581432 83582040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102226.1 MGP_C57BL6NJ_G0040228.1 mouse_genomes_project 2 170015611 170016060 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0056203.1 MGP_C57BL6NJ_G0026381.1 mouse_genomes_project 2 89885890 89886853 - MGP_C57BL6NJ_P0056203 Olfr1048 protein_coding protein_coding MGP_C57BL6NJ_T0057376.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126582294 126609237 - MGP_C57BL6NJ_P0057376 Rpap1 protein_coding protein_coding MGP_C57BL6NJ_T0057377.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126582949 126609261 - MGP_C57BL6NJ_P0057377 Rpap1 protein_coding protein_coding MGP_C57BL6NJ_T0057378.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126582950 126609270 - MGP_C57BL6NJ_P0057378 Rpap1 protein_coding protein_coding MGP_C57BL6NJ_T0057379.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126582953 126609233 - MGP_C57BL6NJ_P0057379 Rpap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057380.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126582956 126609253 - MGP_C57BL6NJ_P0057380 Rpap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057381.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126587044 126609252 - Rpap1 protein_coding retained_intron MGP_C57BL6NJ_T0057382.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126597861 126609247 - Rpap1 protein_coding retained_intron MGP_C57BL6NJ_T0057383.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126598067 126601874 - Rpap1 protein_coding retained_intron MGP_C57BL6NJ_T0057384.1 MGP_C57BL6NJ_G0026773.1 mouse_genomes_project 2 126598398 126609262 - Rpap1 protein_coding processed_transcript MGP_C57BL6NJ_T0057441.1 MGP_C57BL6NJ_G0026783.1 mouse_genomes_project 2 127137829 127163865 - MGP_C57BL6NJ_P0057441 Pla2g4d protein_coding protein_coding MGP_C57BL6NJ_T0054178.1 MGP_C57BL6NJ_G0025969.1 mouse_genomes_project 2 29162907 29186028 + MGP_C57BL6NJ_P0054178 protein_coding protein_coding MGP_C57BL6NJ_T0054179.1 MGP_C57BL6NJ_G0025969.1 mouse_genomes_project 2 29168763 29176944 + MGP_C57BL6NJ_P0054179 protein_coding protein_coding MGP_C57BL6NJ_T0054180.1 MGP_C57BL6NJ_G0025969.1 mouse_genomes_project 2 29174381 29177028 + protein_coding processed_transcript MGP_C57BL6NJ_T0053770.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25094770 25112604 - MGP_C57BL6NJ_P0053770 Snapc4 protein_coding protein_coding MGP_C57BL6NJ_T0053771.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25094772 25097030 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053772.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25094778 25112577 - MGP_C57BL6NJ_P0053772 Snapc4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053773.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25094779 25112608 - MGP_C57BL6NJ_P0053773 Snapc4 protein_coding protein_coding MGP_C57BL6NJ_T0053774.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25094781 25112587 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053775.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25098619 25099776 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053776.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25101462 25105637 - MGP_C57BL6NJ_P0053776 Snapc4 protein_coding protein_coding MGP_C57BL6NJ_T0053777.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25101491 25105617 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053778.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25101512 25103148 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053779.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25101989 25106134 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053780.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25102838 25105361 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053781.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25102838 25112590 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053782.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25105567 25106744 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053783.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25109643 25112608 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0053784.1 MGP_C57BL6NJ_G0025902.1 mouse_genomes_project 2 25110348 25112581 - Snapc4 protein_coding processed_transcript MGP_C57BL6NJ_T0060065.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 189888903 190124122 + MGP_C57BL6NJ_P0060065 Phactr3 protein_coding protein_coding MGP_C57BL6NJ_T0060066.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 189889107 190122121 + MGP_C57BL6NJ_P0060066 Phactr3 protein_coding protein_coding MGP_C57BL6NJ_T0060067.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 189913498 190122126 + MGP_C57BL6NJ_P0060067 Phactr3 protein_coding protein_coding MGP_C57BL6NJ_T0060068.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 189946432 190122121 + MGP_C57BL6NJ_P0060068 Phactr3 protein_coding protein_coding MGP_C57BL6NJ_T0060069.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 190113185 190117396 + Phactr3 protein_coding retained_intron MGP_C57BL6NJ_T0060070.1 MGP_C57BL6NJ_G0027396.1 mouse_genomes_project 2 190113421 190118460 + Phactr3 protein_coding retained_intron MGP_C57BL6NJ_T0103048.1 MGP_C57BL6NJ_G0040842.1 mouse_genomes_project 2 94943721 94945715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018360.1 MGP_C57BL6NJ_G0015877.1 mouse_genomes_project 2 168029721 168030473 + Gm20412 processed_transcript processed_transcript MGP_C57BL6NJ_T0055447.1 MGP_C57BL6NJ_G0026193.1 mouse_genomes_project 2 65589837 65733373 - MGP_C57BL6NJ_P0055447 Fign protein_coding protein_coding MGP_C57BL6NJ_T0055448.1 MGP_C57BL6NJ_G0026193.1 mouse_genomes_project 2 65595645 65733399 - MGP_C57BL6NJ_P0055448 Fign protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055449.1 MGP_C57BL6NJ_G0026193.1 mouse_genomes_project 2 65599845 65733349 - Fign protein_coding processed_transcript MGP_C57BL6NJ_T0055450.1 MGP_C57BL6NJ_G0026193.1 mouse_genomes_project 2 65600014 65733371 - Fign protein_coding processed_transcript MGP_C57BL6NJ_T0101463.1 MGP_C57BL6NJ_G0039509.1 mouse_genomes_project 2 8613510 8613639 - Gm23877 snoRNA snoRNA MGP_C57BL6NJ_T0004208.1 MGP_C57BL6NJ_G0003727.1 mouse_genomes_project 2 120385578 120392565 + C130080G10Rik antisense antisense MGP_C57BL6NJ_T0004209.1 MGP_C57BL6NJ_G0003727.1 mouse_genomes_project 2 120385639 120392542 + C130080G10Rik antisense antisense MGP_C57BL6NJ_T0004210.1 MGP_C57BL6NJ_G0003727.1 mouse_genomes_project 2 120386490 120392044 + C130080G10Rik antisense antisense MGP_C57BL6NJ_T0004211.1 MGP_C57BL6NJ_G0003727.1 mouse_genomes_project 2 120387531 120392350 + C130080G10Rik antisense antisense MGP_C57BL6NJ_T0004212.1 MGP_C57BL6NJ_G0003727.1 mouse_genomes_project 2 120387556 120395976 + C130080G10Rik antisense antisense MGP_C57BL6NJ_T0055005.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38121221 38135320 + Lhx2 protein_coding retained_intron MGP_C57BL6NJ_T0055006.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38122825 38136452 + MGP_C57BL6NJ_P0055006 Lhx2 protein_coding protein_coding MGP_C57BL6NJ_T0055007.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38133394 38136258 + MGP_C57BL6NJ_P0055007 Lhx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055008.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38133400 38151344 + MGP_C57BL6NJ_P0055008 Lhx2 protein_coding protein_coding MGP_C57BL6NJ_T0055009.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38134158 38136200 + MGP_C57BL6NJ_P0055009 Lhx2 protein_coding protein_coding MGP_C57BL6NJ_T0055010.1 MGP_C57BL6NJ_G0026119.1 mouse_genomes_project 2 38135428 38141716 + Lhx2 protein_coding retained_intron MGP_C57BL6NJ_T0102996.1 MGP_C57BL6NJ_G0040790.1 mouse_genomes_project 2 35951732 35952638 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0057790.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132348728 132353108 - Myef2 protein_coding processed_transcript MGP_C57BL6NJ_T0057791.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132350371 132391337 - MGP_C57BL6NJ_P0057791 Myef2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057792.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132350668 132391368 - MGP_C57BL6NJ_P0057792 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057793.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132351841 132391365 - MGP_C57BL6NJ_P0057793 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057794.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132351842 132391403 - MGP_C57BL6NJ_P0057794 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057795.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132351842 132391402 - MGP_C57BL6NJ_P0057795 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057796.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132352930 132384615 - MGP_C57BL6NJ_P0057796 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057797.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132363229 132391156 - MGP_C57BL6NJ_P0057797 Myef2 protein_coding protein_coding MGP_C57BL6NJ_T0057798.1 MGP_C57BL6NJ_G0026845.1 mouse_genomes_project 2 132367585 132391317 - Myef2 protein_coding retained_intron MGP_C57BL6NJ_T0007530.1 MGP_C57BL6NJ_G0006173.1 mouse_genomes_project 2 160813419 160815820 - 4930556L07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007346.1 MGP_C57BL6NJ_G0006024.1 mouse_genomes_project 2 33211091 33213645 - 9430024E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0001199.1 MGP_C57BL6NJ_G0001105.1 mouse_genomes_project 2 35730658 35733830 - TEC TEC MGP_C57BL6NJ_T0010726.1 MGP_C57BL6NJ_G0008811.1 mouse_genomes_project 2 192297575 192297652 + Mir1a-1 miRNA miRNA MGP_C57BL6NJ_T0059962.1 MGP_C57BL6NJ_G0027367.1 mouse_genomes_project 2 183730752 183769159 + MGP_C57BL6NJ_P0059962 Cass4 protein_coding protein_coding MGP_C57BL6NJ_T0059963.1 MGP_C57BL6NJ_G0027367.1 mouse_genomes_project 2 183730779 183773421 + MGP_C57BL6NJ_P0059963 Cass4 protein_coding protein_coding MGP_C57BL6NJ_T0059964.1 MGP_C57BL6NJ_G0027367.1 mouse_genomes_project 2 183730858 183772524 + MGP_C57BL6NJ_P0059964 Cass4 protein_coding protein_coding MGP_C57BL6NJ_T0054047.1 MGP_C57BL6NJ_G0025951.1 mouse_genomes_project 2 27887794 27896516 - MGP_C57BL6NJ_P0054047 Barhl1 protein_coding protein_coding MGP_C57BL6NJ_T0054048.1 MGP_C57BL6NJ_G0025951.1 mouse_genomes_project 2 27887799 27892611 - Barhl1 protein_coding processed_transcript MGP_C57BL6NJ_T0054049.1 MGP_C57BL6NJ_G0025951.1 mouse_genomes_project 2 27889084 27896535 - MGP_C57BL6NJ_P0054049 Barhl1 protein_coding protein_coding MGP_C57BL6NJ_T0054050.1 MGP_C57BL6NJ_G0025951.1 mouse_genomes_project 2 27889084 27896752 - MGP_C57BL6NJ_P0054050 Barhl1 protein_coding protein_coding MGP_C57BL6NJ_T0054051.1 MGP_C57BL6NJ_G0025951.1 mouse_genomes_project 2 27889755 27895609 - Barhl1 protein_coding processed_transcript MGP_C57BL6NJ_T0102221.1 MGP_C57BL6NJ_G0040224.1 mouse_genomes_project 2 118222103 118223228 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0054643.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32147078 32183080 + MGP_C57BL6NJ_P0054643 Sh2d3c protein_coding protein_coding MGP_C57BL6NJ_T0054644.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32155569 32172442 + Sh2d3c protein_coding processed_transcript MGP_C57BL6NJ_T0054645.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32155569 32183596 + MGP_C57BL6NJ_P0054645 Sh2d3c protein_coding protein_coding MGP_C57BL6NJ_T0054648.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32163141 32168919 + Sh2d3c protein_coding processed_transcript MGP_C57BL6NJ_T0054649.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32169087 32174662 + Sh2d3c protein_coding processed_transcript MGP_C57BL6NJ_T0054650.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32169089 32171274 + Sh2d3c protein_coding processed_transcript MGP_C57BL6NJ_T0054651.1 MGP_C57BL6NJ_G0026037.1 mouse_genomes_project 2 32169153 32183088 + MGP_C57BL6NJ_P0054651 Sh2d3c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0014040.1 MGP_C57BL6NJ_G0012085.1 mouse_genomes_project 2 114480390 114481321 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056157.1 MGP_C57BL6NJ_G0026339.1 mouse_genomes_project 2 88494502 88498201 + MGP_C57BL6NJ_P0056157 Aplnr protein_coding protein_coding MGP_C57BL6NJ_T0056158.1 MGP_C57BL6NJ_G0026339.1 mouse_genomes_project 2 88495669 88498199 + MGP_C57BL6NJ_P0056158 Aplnr protein_coding protein_coding MGP_C57BL6NJ_T0011770.1 MGP_C57BL6NJ_G0009855.1 mouse_genomes_project 2 110806421 110806654 - Gm27308 misc_RNA misc_RNA MGP_C57BL6NJ_T0058152.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138332281 138467961 - MGP_C57BL6NJ_P0058152 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058153.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138333918 138342772 - MGP_C57BL6NJ_P0058153 4930402H24Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058154.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138335386 138356841 - MGP_C57BL6NJ_P0058154 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058155.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138342681 138357108 - 4930402H24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0058156.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138361423 138364403 - 4930402H24Rik protein_coding retained_intron MGP_C57BL6NJ_T0058157.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138363902 138382532 - 4930402H24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0058158.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138363913 138395766 - MGP_C57BL6NJ_P0058158 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058159.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138373372 138468047 - 4930402H24Rik protein_coding retained_intron MGP_C57BL6NJ_T0058160.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138402249 138403326 - 4930402H24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0058161.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138402446 138438857 - 4930402H24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0058162.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138408084 138468026 - 4930402H24Rik protein_coding retained_intron MGP_C57BL6NJ_T0058163.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138432187 138442252 - 4930402H24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0058164.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138434117 138468060 - MGP_C57BL6NJ_P0058164 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058165.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138438824 138468052 - MGP_C57BL6NJ_P0058165 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058166.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138438859 138468049 - MGP_C57BL6NJ_P0058166 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058167.1 MGP_C57BL6NJ_G0026937.1 mouse_genomes_project 2 138440825 138544853 - MGP_C57BL6NJ_P0058167 4930402H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0101516.1 MGP_C57BL6NJ_G0039562.1 mouse_genomes_project 2 136258833 136258957 + Gm23172 snoRNA snoRNA MGP_C57BL6NJ_T0004181.1 MGP_C57BL6NJ_G0003710.1 mouse_genomes_project 2 88560611 88562341 + Gm13716 antisense antisense MGP_C57BL6NJ_T0014093.1 MGP_C57BL6NJ_G0012138.1 mouse_genomes_project 2 139083512 139083837 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007461.1 MGP_C57BL6NJ_G0006118.1 mouse_genomes_project 2 117139588 117145754 - Gm13942 lincRNA lincRNA MGP_C57BL6NJ_T0013961.1 MGP_C57BL6NJ_G0012006.1 mouse_genomes_project 2 87410389 87411214 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014155.1 MGP_C57BL6NJ_G0012200.1 mouse_genomes_project 2 162642199 162642481 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059516.1 MGP_C57BL6NJ_G0027252.1 mouse_genomes_project 2 174017733 174041389 - MGP_C57BL6NJ_P0059516 Ada protein_coding protein_coding MGP_C57BL6NJ_T0059517.1 MGP_C57BL6NJ_G0027252.1 mouse_genomes_project 2 174021164 174022016 - Ada protein_coding processed_transcript MGP_C57BL6NJ_T0059231.1 MGP_C57BL6NJ_G0027191.1 mouse_genomes_project 2 166415949 166423143 + MGP_C57BL6NJ_P0059231 Myl9 protein_coding protein_coding MGP_C57BL6NJ_T0059232.1 MGP_C57BL6NJ_G0027191.1 mouse_genomes_project 2 166415983 166422846 + Myl9 protein_coding processed_transcript MGP_C57BL6NJ_T0059233.1 MGP_C57BL6NJ_G0027191.1 mouse_genomes_project 2 166415986 166422019 + Myl9 protein_coding processed_transcript MGP_C57BL6NJ_T0059234.1 MGP_C57BL6NJ_G0027191.1 mouse_genomes_project 2 166420001 166422649 + Myl9 protein_coding processed_transcript MGP_C57BL6NJ_T0055571.1 MGP_C57BL6NJ_G0026218.1 mouse_genomes_project 2 71495681 71672670 - MGP_C57BL6NJ_P0055571 Lrp2 protein_coding protein_coding MGP_C57BL6NJ_T0055572.1 MGP_C57BL6NJ_G0026218.1 mouse_genomes_project 2 71579748 71672634 - MGP_C57BL6NJ_P0055572 Lrp2 protein_coding protein_coding MGP_C57BL6NJ_T0055573.1 MGP_C57BL6NJ_G0026218.1 mouse_genomes_project 2 71581167 71582690 - Lrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0055574.1 MGP_C57BL6NJ_G0026218.1 mouse_genomes_project 2 71599705 71672634 - MGP_C57BL6NJ_P0055574 Lrp2 protein_coding protein_coding MGP_C57BL6NJ_T0007574.1 MGP_C57BL6NJ_G0006210.1 mouse_genomes_project 2 179050330 179057589 - Gm14235 lincRNA lincRNA MGP_C57BL6NJ_T0007545.1 MGP_C57BL6NJ_G0006185.1 mouse_genomes_project 2 169953275 169984391 - Gm14223 lincRNA lincRNA MGP_C57BL6NJ_T0058210.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138836226 138847756 + MGP_C57BL6NJ_P0058210 Cdc25b protein_coding protein_coding MGP_C57BL6NJ_T0058211.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138836235 138847758 + MGP_C57BL6NJ_P0058211 Cdc25b protein_coding protein_coding MGP_C57BL6NJ_T0058212.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138837435 138841191 + Cdc25b protein_coding retained_intron MGP_C57BL6NJ_T0058213.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138840622 138841375 + Cdc25b protein_coding retained_intron MGP_C57BL6NJ_T0058214.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138841015 138842665 + Cdc25b protein_coding retained_intron MGP_C57BL6NJ_T0058215.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138841085 138842552 + Cdc25b protein_coding retained_intron MGP_C57BL6NJ_T0058216.1 MGP_C57BL6NJ_G0026947.1 mouse_genomes_project 2 138842146 138843679 + Cdc25b protein_coding retained_intron MGP_C57BL6NJ_T0103022.1 MGP_C57BL6NJ_G0040816.1 mouse_genomes_project 2 90271430 90272372 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099367.1 MGP_C57BL6NJ_G0037425.1 mouse_genomes_project 2 1241950 1244223 + Gm38348 sense_intronic sense_intronic MGP_C57BL6NJ_T0004133.1 MGP_C57BL6NJ_G0003675.1 mouse_genomes_project 2 63863348 63979646 + Gm13561 antisense antisense MGP_C57BL6NJ_T0007395.1 MGP_C57BL6NJ_G0006066.1 mouse_genomes_project 2 75147617 75219130 - 6430710C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007396.1 MGP_C57BL6NJ_G0006066.1 mouse_genomes_project 2 75148276 75152634 - 6430710C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007397.1 MGP_C57BL6NJ_G0006066.1 mouse_genomes_project 2 75188492 75219175 - 6430710C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007398.1 MGP_C57BL6NJ_G0006066.1 mouse_genomes_project 2 75188809 75203973 - 6430710C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0057937.1 MGP_C57BL6NJ_G0026879.1 mouse_genomes_project 2 134742817 134746830 + MGP_C57BL6NJ_P0057937 Adra2b protein_coding protein_coding MGP_C57BL6NJ_T0057938.1 MGP_C57BL6NJ_G0026879.1 mouse_genomes_project 2 134742895 134746830 + MGP_C57BL6NJ_P0057938 Adra2b protein_coding protein_coding MGP_C57BL6NJ_T0013949.1 MGP_C57BL6NJ_G0011994.1 mouse_genomes_project 2 83905930 83907102 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101479.1 MGP_C57BL6NJ_G0039525.1 mouse_genomes_project 2 32413290 32413420 + Snora65 snoRNA snoRNA MGP_C57BL6NJ_T0055546.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70865830 71127806 + MGP_C57BL6NJ_P0055546 Cers6 protein_coding protein_coding MGP_C57BL6NJ_T0055547.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70865831 70867114 + Cers6 protein_coding retained_intron MGP_C57BL6NJ_T0055548.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70865839 71084217 + Cers6 protein_coding retained_intron MGP_C57BL6NJ_T0055549.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70865859 70939854 + Cers6 protein_coding retained_intron MGP_C57BL6NJ_T0055550.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70865975 71122116 + MGP_C57BL6NJ_P0055550 Cers6 protein_coding protein_coding MGP_C57BL6NJ_T0055551.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70953281 71062209 + Cers6 protein_coding retained_intron MGP_C57BL6NJ_T0055552.1 MGP_C57BL6NJ_G0026212.1 mouse_genomes_project 2 70965934 71062565 + Cers6 protein_coding retained_intron MGP_C57BL6NJ_T0013793.1 MGP_C57BL6NJ_G0011838.1 mouse_genomes_project 2 24690518 24691155 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007372.1 MGP_C57BL6NJ_G0006045.1 mouse_genomes_project 2 52134192 52136412 - Gm13499 lincRNA lincRNA MGP_C57BL6NJ_T0004107.1 MGP_C57BL6NJ_G0003657.1 mouse_genomes_project 2 33311211 33318987 + Nron antisense antisense MGP_C57BL6NJ_T0004108.1 MGP_C57BL6NJ_G0003657.1 mouse_genomes_project 2 33311223 33317851 + Nron antisense antisense MGP_C57BL6NJ_T0004109.1 MGP_C57BL6NJ_G0003657.1 mouse_genomes_project 2 33311254 33316834 + Nron antisense antisense MGP_C57BL6NJ_T0060091.1 MGP_C57BL6NJ_G0027403.1 mouse_genomes_project 2 191915288 191925774 + MGP_C57BL6NJ_P0060091 Lsm14b protein_coding protein_coding MGP_C57BL6NJ_T0060092.1 MGP_C57BL6NJ_G0027403.1 mouse_genomes_project 2 191915487 191925781 + MGP_C57BL6NJ_P0060092 Lsm14b protein_coding protein_coding MGP_C57BL6NJ_T0060093.1 MGP_C57BL6NJ_G0027403.1 mouse_genomes_project 2 191918210 191924123 + Lsm14b protein_coding processed_transcript MGP_C57BL6NJ_T0007467.1 MGP_C57BL6NJ_G0006124.1 mouse_genomes_project 2 121949376 121968372 - 3110099E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007468.1 MGP_C57BL6NJ_G0006124.1 mouse_genomes_project 2 121950889 121983762 - 3110099E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007469.1 MGP_C57BL6NJ_G0006124.1 mouse_genomes_project 2 121951594 121968378 - 3110099E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0058397.1 MGP_C57BL6NJ_G0026984.1 mouse_genomes_project 2 146345058 146643215 + Btbd3 protein_coding processed_transcript MGP_C57BL6NJ_T0058398.1 MGP_C57BL6NJ_G0026984.1 mouse_genomes_project 2 146345066 146688149 + Btbd3 protein_coding processed_transcript MGP_C57BL6NJ_T0058399.1 MGP_C57BL6NJ_G0026984.1 mouse_genomes_project 2 146375494 146381008 + MGP_C57BL6NJ_P0058399 Btbd3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059053.1 MGP_C57BL6NJ_G0027170.1 mouse_genomes_project 2 165388117 165397257 - MGP_C57BL6NJ_P0059053 Fam83c protein_coding protein_coding MGP_C57BL6NJ_T0054488.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31607819 31627872 + MGP_C57BL6NJ_P0054488 Pomt1 protein_coding protein_coding MGP_C57BL6NJ_T0054489.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31607872 31608930 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0054490.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31607901 31616863 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0054491.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31607914 31627868 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0054492.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31608266 31616488 + MGP_C57BL6NJ_P0054492 Pomt1 protein_coding protein_coding MGP_C57BL6NJ_T0054493.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31608568 31616578 + MGP_C57BL6NJ_P0054493 Pomt1 protein_coding protein_coding MGP_C57BL6NJ_T0054494.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31617224 31623775 + MGP_C57BL6NJ_P0054494 Pomt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054495.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31618155 31621557 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0054496.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31620438 31624637 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0054497.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31621528 31626652 + MGP_C57BL6NJ_P0054497 Pomt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054498.1 MGP_C57BL6NJ_G0026017.1 mouse_genomes_project 2 31624138 31625558 + Pomt1 protein_coding retained_intron MGP_C57BL6NJ_T0007311.1 MGP_C57BL6NJ_G0005998.1 mouse_genomes_project 2 8982776 9036776 - 8030442B05Rik lincRNA lincRNA MGP_C57BL6NJ_T0013842.1 MGP_C57BL6NJ_G0011887.1 mouse_genomes_project 2 45750780 45751014 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054763.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34237547 34329519 - MGP_C57BL6NJ_P0054763 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054764.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34239129 34328803 - MGP_C57BL6NJ_P0054764 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054765.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34239938 34328905 - MGP_C57BL6NJ_P0054765 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054766.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34239938 34328905 - MGP_C57BL6NJ_P0054766 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054767.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34240436 34269681 - MGP_C57BL6NJ_P0054767 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054768.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34240847 34245673 - MGP_C57BL6NJ_P0054768 Gapvd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054769.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34258792 34269941 - Gapvd1 protein_coding processed_transcript MGP_C57BL6NJ_T0054770.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34262373 34266414 - Gapvd1 protein_coding retained_intron MGP_C57BL6NJ_T0054771.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34265184 34300224 - MGP_C57BL6NJ_P0054771 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054772.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34265205 34300127 - MGP_C57BL6NJ_P0054772 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0054773.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34269597 34278544 - MGP_C57BL6NJ_P0054773 Gapvd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054774.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34269641 34278659 - Gapvd1 protein_coding processed_transcript MGP_C57BL6NJ_T0054775.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34275553 34279055 - Gapvd1 protein_coding retained_intron MGP_C57BL6NJ_T0054776.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34297594 34328769 - Gapvd1 protein_coding retained_intron MGP_C57BL6NJ_T0054777.1 MGP_C57BL6NJ_G0026057.1 mouse_genomes_project 2 34300197 34328755 - MGP_C57BL6NJ_P0054777 Gapvd1 protein_coding protein_coding MGP_C57BL6NJ_T0007576.1 MGP_C57BL6NJ_G0006212.1 mouse_genomes_project 2 179206522 179212623 - Gm14262 lincRNA lincRNA MGP_C57BL6NJ_T0056934.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109731203 110016218 - MGP_C57BL6NJ_P0056934 D430041D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0056935.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109735177 109819543 - D430041D05Rik protein_coding retained_intron MGP_C57BL6NJ_T0056936.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109736911 109849581 - MGP_C57BL6NJ_P0056936 D430041D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0056937.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109740310 109746574 - D430041D05Rik protein_coding retained_intron MGP_C57BL6NJ_T0056938.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109773337 109831946 - D430041D05Rik protein_coding retained_intron MGP_C57BL6NJ_T0056939.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109796722 109848747 - D430041D05Rik protein_coding retained_intron MGP_C57BL6NJ_T0056940.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109845885 110015876 - MGP_C57BL6NJ_P0056940 D430041D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0056941.1 MGP_C57BL6NJ_G0026637.1 mouse_genomes_project 2 109846178 110015877 - MGP_C57BL6NJ_P0056941 D430041D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0013850.1 MGP_C57BL6NJ_G0011895.1 mouse_genomes_project 2 49820968 49821397 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056362.1 MGP_C57BL6NJ_G0026519.1 mouse_genomes_project 2 93832251 93833304 - MGP_C57BL6NJ_P0056362 Olfr1242 protein_coding protein_coding MGP_C57BL6NJ_T0056363.1 MGP_C57BL6NJ_G0026519.1 mouse_genomes_project 2 93832347 93837171 - MGP_C57BL6NJ_P0056363 Olfr1242 protein_coding protein_coding MGP_C57BL6NJ_T0056364.1 MGP_C57BL6NJ_G0026519.1 mouse_genomes_project 2 93832977 93836661 - Olfr1242 protein_coding processed_transcript MGP_C57BL6NJ_T0010655.1 MGP_C57BL6NJ_G0008740.1 mouse_genomes_project 2 78980028 78980142 + Gm44337 miRNA miRNA MGP_C57BL6NJ_T0001202.1 MGP_C57BL6NJ_G0001108.1 mouse_genomes_project 2 37793553 37800549 + TEC TEC MGP_C57BL6NJ_T0013735.1 MGP_C57BL6NJ_G0011780.1 mouse_genomes_project 2 2431900 2432125 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053964.1 MGP_C57BL6NJ_G0025932.1 mouse_genomes_project 2 26380426 26385923 + Wdr5 protein_coding processed_transcript MGP_C57BL6NJ_T0053965.1 MGP_C57BL6NJ_G0025932.1 mouse_genomes_project 2 26380426 26401761 + MGP_C57BL6NJ_P0053965 Wdr5 protein_coding protein_coding MGP_C57BL6NJ_T0053966.1 MGP_C57BL6NJ_G0025932.1 mouse_genomes_project 2 26385030 26400269 + MGP_C57BL6NJ_P0053966 Wdr5 protein_coding protein_coding MGP_C57BL6NJ_T0053967.1 MGP_C57BL6NJ_G0025932.1 mouse_genomes_project 2 26392998 26398581 + Wdr5 protein_coding processed_transcript MGP_C57BL6NJ_T0056265.1 MGP_C57BL6NJ_G0026433.1 mouse_genomes_project 2 91605284 91608243 + MGP_C57BL6NJ_P0056265 Olfr1130 protein_coding protein_coding MGP_C57BL6NJ_T0004272.1 MGP_C57BL6NJ_G0003772.1 mouse_genomes_project 2 160580037 160581655 - Gm14167 antisense antisense MGP_C57BL6NJ_T0058090.1 MGP_C57BL6NJ_G0026919.1 mouse_genomes_project 2 137869464 137874709 - MGP_C57BL6NJ_P0058090 Idh3b protein_coding protein_coding MGP_C57BL6NJ_T0058091.1 MGP_C57BL6NJ_G0026919.1 mouse_genomes_project 2 137869468 137870707 - MGP_C57BL6NJ_P0058091 Idh3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058092.1 MGP_C57BL6NJ_G0026919.1 mouse_genomes_project 2 137872300 137874596 - Idh3b protein_coding retained_intron MGP_C57BL6NJ_T0058093.1 MGP_C57BL6NJ_G0026919.1 mouse_genomes_project 2 137873824 137874577 - Idh3b protein_coding retained_intron MGP_C57BL6NJ_T0055031.1 MGP_C57BL6NJ_G0026124.1 mouse_genomes_project 2 38762072 38799246 + MGP_C57BL6NJ_P0055031 Olfml2a protein_coding protein_coding MGP_C57BL6NJ_T0004221.1 MGP_C57BL6NJ_G0003736.1 mouse_genomes_project 2 128894135 128895072 - Gm14019 antisense antisense MGP_C57BL6NJ_T0056048.1 MGP_C57BL6NJ_G0026313.1 mouse_genomes_project 2 87159880 87179516 - MGP_C57BL6NJ_P0056048 Zswim2 protein_coding protein_coding MGP_C57BL6NJ_T0056049.1 MGP_C57BL6NJ_G0026313.1 mouse_genomes_project 2 87161565 87179518 - MGP_C57BL6NJ_P0056049 Zswim2 protein_coding protein_coding MGP_C57BL6NJ_T0056050.1 MGP_C57BL6NJ_G0026313.1 mouse_genomes_project 2 87167725 87168211 - Zswim2 protein_coding processed_transcript MGP_C57BL6NJ_T0010584.1 MGP_C57BL6NJ_G0008669.1 mouse_genomes_project 2 8065816 8065913 + Mir669a-2 miRNA miRNA MGP_C57BL6NJ_T0007403.1 MGP_C57BL6NJ_G0006071.1 mouse_genomes_project 2 76682699 76698827 + Gm13667 lincRNA lincRNA MGP_C57BL6NJ_T0052864.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3053469 3082530 + MGP_C57BL6NJ_P0052864 Nudt5 protein_coding protein_coding MGP_C57BL6NJ_T0052865.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3053484 3079403 + MGP_C57BL6NJ_P0052865 Nudt5 protein_coding protein_coding MGP_C57BL6NJ_T0052866.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3053703 3067064 + Nudt5 protein_coding retained_intron MGP_C57BL6NJ_T0052867.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3053703 3074092 + MGP_C57BL6NJ_P0052867 Nudt5 protein_coding protein_coding MGP_C57BL6NJ_T0052868.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3053740 3072032 + MGP_C57BL6NJ_P0052868 Nudt5 protein_coding protein_coding MGP_C57BL6NJ_T0052869.1 MGP_C57BL6NJ_G0025739.1 mouse_genomes_project 2 3056585 3070879 + Nudt5 protein_coding processed_transcript MGP_C57BL6NJ_T0013870.1 MGP_C57BL6NJ_G0011915.1 mouse_genomes_project 2 56392063 56393089 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053462.1 MGP_C57BL6NJ_G0025837.1 mouse_genomes_project 2 23670715 23680184 - MGP_C57BL6NJ_P0053462 Noxa1 protein_coding protein_coding MGP_C57BL6NJ_T0053463.1 MGP_C57BL6NJ_G0025837.1 mouse_genomes_project 2 23670715 23680166 - MGP_C57BL6NJ_P0053463 Noxa1 protein_coding protein_coding MGP_C57BL6NJ_T0001215.1 MGP_C57BL6NJ_G0001121.1 mouse_genomes_project 2 70997408 71001411 + TEC TEC MGP_C57BL6NJ_T0103004.1 MGP_C57BL6NJ_G0040798.1 mouse_genomes_project 2 38814935 38818774 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059385.1 MGP_C57BL6NJ_G0027224.1 mouse_genomes_project 2 168742463 168761008 + MGP_C57BL6NJ_P0059385 Fam83d protein_coding protein_coding MGP_C57BL6NJ_T0059386.1 MGP_C57BL6NJ_G0027224.1 mouse_genomes_project 2 168755778 168761008 + Fam83d protein_coding retained_intron MGP_C57BL6NJ_T0010577.1 MGP_C57BL6NJ_G0008662.1 mouse_genomes_project 2 8060434 8060521 + Mir467e miRNA miRNA MGP_C57BL6NJ_T0013991.1 MGP_C57BL6NJ_G0012036.1 mouse_genomes_project 2 96320026 96321287 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018221.1 MGP_C57BL6NJ_G0015801.1 mouse_genomes_project 2 28803552 28805884 - processed_transcript processed_transcript MGP_C57BL6NJ_T0053227.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18151982 19071049 + MGP_C57BL6NJ_P0053227 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053228.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18586962 19138377 + MGP_C57BL6NJ_P0053228 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053229.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18586962 18984522 + MGP_C57BL6NJ_P0053229 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053230.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18639933 18984388 + MGP_C57BL6NJ_P0053230 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053231.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18819491 19138366 + MGP_C57BL6NJ_P0053231 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053232.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18819491 19138366 + MGP_C57BL6NJ_P0053232 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053233.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18834552 19137727 + MGP_C57BL6NJ_P0053233 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053234.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18834572 19035303 + Etl4 protein_coding retained_intron MGP_C57BL6NJ_T0053235.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18834589 19138378 + MGP_C57BL6NJ_P0053235 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053236.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18834619 19137052 + MGP_C57BL6NJ_P0053236 Etl4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053237.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18864058 19032971 + Etl4 protein_coding processed_transcript MGP_C57BL6NJ_T0053238.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18864100 18984786 + Etl4 protein_coding processed_transcript MGP_C57BL6NJ_T0053239.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 18875848 19033061 + Etl4 protein_coding processed_transcript MGP_C57BL6NJ_T0053240.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19036735 19070219 + Etl4 protein_coding processed_transcript MGP_C57BL6NJ_T0053241.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19047329 19131272 + Etl4 protein_coding retained_intron MGP_C57BL6NJ_T0053242.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19047329 19113028 + Etl4 protein_coding retained_intron MGP_C57BL6NJ_T0053243.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19047576 19136032 + MGP_C57BL6NJ_P0053243 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053244.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19063604 19138196 + MGP_C57BL6NJ_P0053244 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053245.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19063604 19138555 + MGP_C57BL6NJ_P0053245 Etl4 protein_coding protein_coding MGP_C57BL6NJ_T0053246.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19124909 19136723 + Etl4 protein_coding processed_transcript MGP_C57BL6NJ_T0053247.1 MGP_C57BL6NJ_G0025801.1 mouse_genomes_project 2 19135295 19138366 + Etl4 protein_coding retained_intron MGP_C57BL6NJ_T0001184.1 MGP_C57BL6NJ_G0001090.1 mouse_genomes_project 2 12806860 12808186 + TEC TEC MGP_C57BL6NJ_T0004058.1 MGP_C57BL6NJ_G0003619.1 mouse_genomes_project 2 17645518 17655072 - antisense antisense MGP_C57BL6NJ_T0018194.1 MGP_C57BL6NJ_G0015786.1 mouse_genomes_project 2 11042604 11101746 + Gm13270 processed_transcript antisense MGP_C57BL6NJ_T0018195.1 MGP_C57BL6NJ_G0015786.1 mouse_genomes_project 2 11042605 11045354 + Gm13270 processed_transcript retained_intron MGP_C57BL6NJ_T0059729.1 MGP_C57BL6NJ_G0027317.1 mouse_genomes_project 2 175913743 175986879 - MGP_C57BL6NJ_P0059729 Slc13a3 protein_coding protein_coding MGP_C57BL6NJ_T0059730.1 MGP_C57BL6NJ_G0027317.1 mouse_genomes_project 2 175914010 175986879 - MGP_C57BL6NJ_P0059730 Slc13a3 protein_coding protein_coding MGP_C57BL6NJ_T0059731.1 MGP_C57BL6NJ_G0027317.1 mouse_genomes_project 2 175915420 175920455 - Slc13a3 protein_coding retained_intron MGP_C57BL6NJ_T0059732.1 MGP_C57BL6NJ_G0027317.1 mouse_genomes_project 2 175923272 175931672 - Slc13a3 protein_coding retained_intron MGP_C57BL6NJ_T0059733.1 MGP_C57BL6NJ_G0027317.1 mouse_genomes_project 2 175957770 175986848 - Slc13a3 protein_coding retained_intron MGP_C57BL6NJ_T0056221.1 MGP_C57BL6NJ_G0026397.1 mouse_genomes_project 2 90525976 90526918 - MGP_C57BL6NJ_P0056221 Olfr1087 protein_coding protein_coding MGP_C57BL6NJ_T0014113.1 MGP_C57BL6NJ_G0012158.1 mouse_genomes_project 2 149452642 149453428 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060184.1 MGP_C57BL6NJ_G0027425.1 mouse_genomes_project 2 192872766 192912244 - MGP_C57BL6NJ_P0060184 Ythdf1 protein_coding protein_coding MGP_C57BL6NJ_T0060185.1 MGP_C57BL6NJ_G0027425.1 mouse_genomes_project 2 192873759 192912244 - MGP_C57BL6NJ_P0060185 Ythdf1 protein_coding protein_coding MGP_C57BL6NJ_T0060186.1 MGP_C57BL6NJ_G0027425.1 mouse_genomes_project 2 192903063 192911682 - MGP_C57BL6NJ_P0060186 Ythdf1 protein_coding protein_coding MGP_C57BL6NJ_T0010561.1 MGP_C57BL6NJ_G0008646.1 mouse_genomes_project 2 8034577 8034698 + Mir669f miRNA miRNA MGP_C57BL6NJ_T0004174.1 MGP_C57BL6NJ_G0003704.1 mouse_genomes_project 2 77735975 77926850 + 2600014E21Rik antisense antisense MGP_C57BL6NJ_T0007495.1 MGP_C57BL6NJ_G0006145.1 mouse_genomes_project 2 136750546 136767064 + A730036I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007496.1 MGP_C57BL6NJ_G0006145.1 mouse_genomes_project 2 136750605 136764814 + A730036I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007497.1 MGP_C57BL6NJ_G0006145.1 mouse_genomes_project 2 136759580 136763531 + A730036I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0059387.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769224 168834593 + MGP_C57BL6NJ_P0059387 Dhx35 protein_coding protein_coding MGP_C57BL6NJ_T0059388.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769224 168834593 + MGP_C57BL6NJ_P0059388 Dhx35 protein_coding protein_coding MGP_C57BL6NJ_T0059389.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769279 168834593 + Dhx35 protein_coding processed_transcript MGP_C57BL6NJ_T0059390.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769282 168821440 + Dhx35 protein_coding retained_intron MGP_C57BL6NJ_T0059391.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769302 168804074 + MGP_C57BL6NJ_P0059391 Dhx35 protein_coding protein_coding MGP_C57BL6NJ_T0059392.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168769308 168792893 + Dhx35 protein_coding processed_transcript MGP_C57BL6NJ_T0059393.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168770340 168775914 + Dhx35 protein_coding processed_transcript MGP_C57BL6NJ_T0059394.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168801905 168809436 + Dhx35 protein_coding processed_transcript MGP_C57BL6NJ_T0059395.1 MGP_C57BL6NJ_G0027225.1 mouse_genomes_project 2 168825118 168833747 + Dhx35 protein_coding processed_transcript MGP_C57BL6NJ_T0102466.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185050322 185140057 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102467.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185051440 185140057 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102468.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185052201 185105779 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102469.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185055907 185140057 - transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102470.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185056855 185061756 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102471.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185057588 185062307 - transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102472.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185067099 185140057 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102473.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185067099 185139886 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102474.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185068126 185079812 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102475.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185068140 185140158 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102476.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185079473 185140022 - transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102477.1 MGP_C57BL6NJ_G0040355.1 mouse_genomes_project 2 185088587 185140053 - transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0053871.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25715583 25727008 + MGP_C57BL6NJ_P0053871 Rpl7a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053872.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25718198 25727004 + MGP_C57BL6NJ_P0053872 Rpl7a protein_coding protein_coding MGP_C57BL6NJ_T0053873.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25718251 25726743 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0053874.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25718255 25727004 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0053875.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25718440 25727004 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0053876.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25722625 25723167 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0053877.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25725877 25727004 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0053878.1 MGP_C57BL6NJ_G0025916.1 mouse_genomes_project 2 25726304 25727004 + Rpl7a protein_coding processed_transcript MGP_C57BL6NJ_T0014154.1 MGP_C57BL6NJ_G0012199.1 mouse_genomes_project 2 161887101 161887702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013852.1 MGP_C57BL6NJ_G0011897.1 mouse_genomes_project 2 50345698 50346176 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057340.1 MGP_C57BL6NJ_G0026760.1 mouse_genomes_project 2 126027031 126029103 - MGP_C57BL6NJ_P0057340 Rhov protein_coding protein_coding MGP_C57BL6NJ_T0014090.1 MGP_C57BL6NJ_G0012135.1 mouse_genomes_project 2 138514862 138516130 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007422.1 MGP_C57BL6NJ_G0006086.1 mouse_genomes_project 2 82375072 82382191 + Gm26755 lincRNA lincRNA MGP_C57BL6NJ_T0013749.1 MGP_C57BL6NJ_G0011794.1 mouse_genomes_project 2 10138793 10139193 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056234.1 MGP_C57BL6NJ_G0026409.1 mouse_genomes_project 2 90898671 90899646 + MGP_C57BL6NJ_P0056234 Olfr1102 protein_coding protein_coding MGP_C57BL6NJ_T0102994.1 MGP_C57BL6NJ_G0040788.1 mouse_genomes_project 2 20898018 20898472 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0057230.1 MGP_C57BL6NJ_G0026734.1 mouse_genomes_project 2 124952924 125056382 - MGP_C57BL6NJ_P0057230 Gpr176 protein_coding protein_coding MGP_C57BL6NJ_T0057110.1 MGP_C57BL6NJ_G0026693.1 mouse_genomes_project 2 117988521 117989469 + MGP_C57BL6NJ_P0057110 Olfr1302 protein_coding protein_coding MGP_C57BL6NJ_T0004033.1 MGP_C57BL6NJ_G0003600.1 mouse_genomes_project 2 755343 757535 - Gm13185 antisense antisense MGP_C57BL6NJ_T0007384.1 MGP_C57BL6NJ_G0006055.1 mouse_genomes_project 2 63961728 63965441 - Gm13564 lincRNA lincRNA MGP_C57BL6NJ_T0056908.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109512790 109538777 + MGP_C57BL6NJ_P0056908 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056909.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109512799 109539605 + MGP_C57BL6NJ_P0056909 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056911.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109527258 109538819 + MGP_C57BL6NJ_P0056911 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056912.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109527859 109539582 + MGP_C57BL6NJ_P0056912 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056913.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109527871 109533869 + MGP_C57BL6NJ_P0056913 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056914.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109527953 109539601 + MGP_C57BL6NJ_P0056914 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056915.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109527974 109539566 + MGP_C57BL6NJ_P0056915 Lmo2 protein_coding protein_coding MGP_C57BL6NJ_T0056916.1 MGP_C57BL6NJ_G0026629.1 mouse_genomes_project 2 109528909 109538643 + Lmo2 protein_coding processed_transcript MGP_C57BL6NJ_T0058845.1 MGP_C57BL6NJ_G0027116.1 mouse_genomes_project 2 162504269 162554178 + MGP_C57BL6NJ_P0058845 Kif3b protein_coding protein_coding MGP_C57BL6NJ_T0010615.1 MGP_C57BL6NJ_G0008700.1 mouse_genomes_project 2 25351798 25351871 + Mir126a miRNA miRNA MGP_C57BL6NJ_T0013905.1 MGP_C57BL6NJ_G0011950.1 mouse_genomes_project 2 68700990 68702504 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057273.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522571 125547116 + MGP_C57BL6NJ_P0057273 Knstrn protein_coding protein_coding MGP_C57BL6NJ_T0057274.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522800 125543669 + MGP_C57BL6NJ_P0057274 Knstrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057275.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522800 125543601 + MGP_C57BL6NJ_P0057275 Knstrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057276.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522845 125540419 + MGP_C57BL6NJ_P0057276 Knstrn protein_coding protein_coding MGP_C57BL6NJ_T0057277.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522864 125543488 + MGP_C57BL6NJ_P0057277 Knstrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057278.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125522994 125543551 + MGP_C57BL6NJ_P0057278 Knstrn protein_coding protein_coding MGP_C57BL6NJ_T0057279.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125541028 125546563 + MGP_C57BL6NJ_P0057279 Knstrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057280.1 MGP_C57BL6NJ_G0026745.1 mouse_genomes_project 2 125543494 125568484 + MGP_C57BL6NJ_P0057280 Knstrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007480.1 MGP_C57BL6NJ_G0006132.1 mouse_genomes_project 2 124465580 124550119 + 4930412B13Rik lincRNA lincRNA MGP_C57BL6NJ_T0014123.1 MGP_C57BL6NJ_G0012168.1 mouse_genomes_project 2 152793362 152793670 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007539.1 MGP_C57BL6NJ_G0006181.1 mouse_genomes_project 2 166237073 166238075 - Gm14174 lincRNA lincRNA MGP_C57BL6NJ_T0013873.1 MGP_C57BL6NJ_G0011918.1 mouse_genomes_project 2 58318693 58319384 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103014.1 MGP_C57BL6NJ_G0040808.1 mouse_genomes_project 2 89297585 89298272 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007546.1 MGP_C57BL6NJ_G0006186.1 mouse_genomes_project 2 170053871 170081159 + 9130015L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0100222.1 MGP_C57BL6NJ_G0038268.1 mouse_genomes_project 2 143992291 143992392 - Gm26227 snRNA snRNA MGP_C57BL6NJ_T0059081.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165549865 165591590 - MGP_C57BL6NJ_P0059081 6430550D23Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059086.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165582117 165591602 - MGP_C57BL6NJ_P0059086 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059087.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165582117 165586101 - MGP_C57BL6NJ_P0059087 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059088.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165582283 165591606 - 6430550D23Rik protein_coding retained_intron MGP_C57BL6NJ_T0059089.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165584822 165591602 - MGP_C57BL6NJ_P0059089 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059090.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165584915 165591660 - MGP_C57BL6NJ_P0059090 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059091.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165585002 165586101 - MGP_C57BL6NJ_P0059091 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059092.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165585045 165585821 - MGP_C57BL6NJ_P0059092 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0059093.1 MGP_C57BL6NJ_G0027175.1 mouse_genomes_project 2 165585077 165585821 - MGP_C57BL6NJ_P0059093 6430550D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0101489.1 MGP_C57BL6NJ_G0039535.1 mouse_genomes_project 2 55086205 55086338 + Gm22298 snoRNA snoRNA MGP_C57BL6NJ_T0052835.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2097310 2120423 - MGP_C57BL6NJ_P0052835 Mcm10 protein_coding protein_coding MGP_C57BL6NJ_T0052836.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2098320 2103403 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052837.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2098320 2109075 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052838.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2098320 2120870 - MGP_C57BL6NJ_P0052838 Mcm10 protein_coding protein_coding MGP_C57BL6NJ_T0052839.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2098627 2100766 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052840.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2098856 2102347 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052841.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2106537 2112616 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052842.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2111558 2112836 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0052843.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2114027 2120832 - Mcm10 protein_coding processed_transcript MGP_C57BL6NJ_T0052844.1 MGP_C57BL6NJ_G0025734.1 mouse_genomes_project 2 2114514 2120794 - Mcm10 protein_coding retained_intron MGP_C57BL6NJ_T0056253.1 MGP_C57BL6NJ_G0026428.1 mouse_genomes_project 2 91432008 91437102 + MGP_C57BL6NJ_P0056253 Olfr1126 protein_coding protein_coding MGP_C57BL6NJ_T0055932.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80151339 80478123 - MGP_C57BL6NJ_P0055932 Zfp385b protein_coding protein_coding MGP_C57BL6NJ_T0055933.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80151339 80258857 - MGP_C57BL6NJ_P0055933 Zfp385b protein_coding protein_coding MGP_C57BL6NJ_T0055934.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80151339 80460343 - MGP_C57BL6NJ_P0055934 Zfp385b protein_coding protein_coding MGP_C57BL6NJ_T0055935.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80151805 80579942 - MGP_C57BL6NJ_P0055935 Zfp385b protein_coding protein_coding MGP_C57BL6NJ_T0055936.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80156619 80258853 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0055937.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80190947 80460343 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0055938.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80204800 80258774 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0055939.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80240941 80460450 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0055940.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80267344 80580385 - MGP_C57BL6NJ_P0055940 Zfp385b protein_coding protein_coding MGP_C57BL6NJ_T0055941.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80268095 80309455 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0055942.1 MGP_C57BL6NJ_G0026292.1 mouse_genomes_project 2 80580362 80582765 - Zfp385b protein_coding processed_transcript MGP_C57BL6NJ_T0001194.1 MGP_C57BL6NJ_G0001100.1 mouse_genomes_project 2 33101016 33101295 + TEC TEC MGP_C57BL6NJ_T0007450.1 MGP_C57BL6NJ_G0006108.1 mouse_genomes_project 2 108861758 108896793 - A930006I01Rik lincRNA lincRNA MGP_C57BL6NJ_T0056295.1 MGP_C57BL6NJ_G0026461.1 mouse_genomes_project 2 92101405 92102350 - MGP_C57BL6NJ_P0056295 Olfr1162 protein_coding protein_coding MGP_C57BL6NJ_T0056296.1 MGP_C57BL6NJ_G0026461.1 mouse_genomes_project 2 92101405 92102840 - MGP_C57BL6NJ_P0056296 Olfr1162 protein_coding protein_coding MGP_C57BL6NJ_T0004044.1 MGP_C57BL6NJ_G0003607.1 mouse_genomes_project 2 3698794 3703042 - Gm13388 antisense antisense MGP_C57BL6NJ_T0014100.1 MGP_C57BL6NJ_G0012145.1 mouse_genomes_project 2 140769236 140770236 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054940.1 MGP_C57BL6NJ_G0026098.1 mouse_genomes_project 2 36583464 36584418 + MGP_C57BL6NJ_P0054940 Olfr354 protein_coding protein_coding MGP_C57BL6NJ_T0101508.1 MGP_C57BL6NJ_G0039554.1 mouse_genomes_project 2 110199844 110199976 + Gm22439 snoRNA snoRNA MGP_C57BL6NJ_T0056454.1 MGP_C57BL6NJ_G0026557.1 mouse_genomes_project 2 95452069 95459288 + MGP_C57BL6NJ_P0056454 Kbtbd4 protein_coding protein_coding MGP_C57BL6NJ_T0056455.1 MGP_C57BL6NJ_G0026557.1 mouse_genomes_project 2 95452072 95459288 + MGP_C57BL6NJ_P0056455 Kbtbd4 protein_coding protein_coding MGP_C57BL6NJ_T0056456.1 MGP_C57BL6NJ_G0026557.1 mouse_genomes_project 2 95452098 95452947 + Kbtbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0056457.1 MGP_C57BL6NJ_G0026557.1 mouse_genomes_project 2 95452404 95453383 + Kbtbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0056458.1 MGP_C57BL6NJ_G0026557.1 mouse_genomes_project 2 95457890 95460353 + Kbtbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0054938.1 MGP_C57BL6NJ_G0026096.1 mouse_genomes_project 2 36544621 36545569 + MGP_C57BL6NJ_P0054938 Olfr352 protein_coding protein_coding MGP_C57BL6NJ_T0007350.1 MGP_C57BL6NJ_G0006027.1 mouse_genomes_project 2 33543125 33636041 - C230014O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0007352.1 MGP_C57BL6NJ_G0006027.1 mouse_genomes_project 2 33628355 33636047 - C230014O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0014083.1 MGP_C57BL6NJ_G0012128.1 mouse_genomes_project 2 136055978 136056252 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058327.1 MGP_C57BL6NJ_G0026969.1 mouse_genomes_project 2 140625320 140644477 + MGP_C57BL6NJ_P0058327 Crls1 protein_coding protein_coding MGP_C57BL6NJ_T0058328.1 MGP_C57BL6NJ_G0026969.1 mouse_genomes_project 2 140625332 140647127 + MGP_C57BL6NJ_P0058328 Crls1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058329.1 MGP_C57BL6NJ_G0026969.1 mouse_genomes_project 2 140625461 140647122 + MGP_C57BL6NJ_P0058329 Crls1 protein_coding protein_coding MGP_C57BL6NJ_T0058330.1 MGP_C57BL6NJ_G0026969.1 mouse_genomes_project 2 140626382 140646229 + MGP_C57BL6NJ_P0058330 Crls1 protein_coding protein_coding MGP_C57BL6NJ_T0058974.1 MGP_C57BL6NJ_G0027154.1 mouse_genomes_project 2 164738470 164752294 + Dynlrb1 protein_coding processed_transcript MGP_C57BL6NJ_T0058975.1 MGP_C57BL6NJ_G0027154.1 mouse_genomes_project 2 164738472 164752299 + MGP_C57BL6NJ_P0058975 Dynlrb1 protein_coding protein_coding MGP_C57BL6NJ_T0058976.1 MGP_C57BL6NJ_G0027154.1 mouse_genomes_project 2 164738545 164752157 + MGP_C57BL6NJ_P0058976 Dynlrb1 protein_coding protein_coding MGP_C57BL6NJ_T0058977.1 MGP_C57BL6NJ_G0027154.1 mouse_genomes_project 2 164738748 164752102 + Dynlrb1 protein_coding processed_transcript MGP_C57BL6NJ_T0101467.1 MGP_C57BL6NJ_G0039513.1 mouse_genomes_project 2 21235603 21235723 + Gm25544 snoRNA snoRNA MGP_C57BL6NJ_T0058550.1 MGP_C57BL6NJ_G0027019.1 mouse_genomes_project 2 154838065 154841751 + MGP_C57BL6NJ_P0058550 Insm1 protein_coding protein_coding MGP_C57BL6NJ_T0059692.1 MGP_C57BL6NJ_G0027310.1 mouse_genomes_project 2 175550879 175568203 - MGP_C57BL6NJ_P0059692 1700025C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0014178.1 MGP_C57BL6NJ_G0012223.1 mouse_genomes_project 2 169899176 169900042 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010664.1 MGP_C57BL6NJ_G0008749.1 mouse_genomes_project 2 97257210 97257282 + Mir7221 miRNA miRNA MGP_C57BL6NJ_T0056206.1 MGP_C57BL6NJ_G0026384.1 mouse_genomes_project 2 89987454 89988393 + MGP_C57BL6NJ_P0056206 Olfr1052 protein_coding protein_coding MGP_C57BL6NJ_T0103034.1 MGP_C57BL6NJ_G0040828.1 mouse_genomes_project 2 92160604 92161554 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0054017.1 MGP_C57BL6NJ_G0025945.1 mouse_genomes_project 2 27570097 27582613 - MGP_C57BL6NJ_P0054017 Gfi1b protein_coding protein_coding MGP_C57BL6NJ_T0054018.1 MGP_C57BL6NJ_G0025945.1 mouse_genomes_project 2 27570102 27582576 - MGP_C57BL6NJ_P0054018 Gfi1b protein_coding protein_coding MGP_C57BL6NJ_T0054019.1 MGP_C57BL6NJ_G0025945.1 mouse_genomes_project 2 27575414 27576036 - Gfi1b protein_coding processed_transcript MGP_C57BL6NJ_T0054020.1 MGP_C57BL6NJ_G0025945.1 mouse_genomes_project 2 27575421 27582613 - Gfi1b protein_coding processed_transcript MGP_C57BL6NJ_T0004034.1 MGP_C57BL6NJ_G0003601.1 mouse_genomes_project 2 1152087 1162204 - 1700080N15Rik antisense antisense MGP_C57BL6NJ_T0004035.1 MGP_C57BL6NJ_G0003601.1 mouse_genomes_project 2 1152089 1162204 - 1700080N15Rik antisense antisense MGP_C57BL6NJ_T0004036.1 MGP_C57BL6NJ_G0003601.1 mouse_genomes_project 2 1155487 1162202 - 1700080N15Rik antisense antisense MGP_C57BL6NJ_T0013863.1 MGP_C57BL6NJ_G0011908.1 mouse_genomes_project 2 53213795 53215497 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056608.1 MGP_C57BL6NJ_G0026577.1 mouse_genomes_project 2 96314719 96316195 + MGP_C57BL6NJ_P0056608 Harbi1 protein_coding protein_coding MGP_C57BL6NJ_T0056609.1 MGP_C57BL6NJ_G0026577.1 mouse_genomes_project 2 96314720 96316593 + MGP_C57BL6NJ_P0056609 Harbi1 protein_coding protein_coding MGP_C57BL6NJ_T0056610.1 MGP_C57BL6NJ_G0026577.1 mouse_genomes_project 2 96314784 96319298 + MGP_C57BL6NJ_P0056610 Harbi1 protein_coding protein_coding MGP_C57BL6NJ_T0056611.1 MGP_C57BL6NJ_G0026577.1 mouse_genomes_project 2 96314789 96325413 + MGP_C57BL6NJ_P0056611 Harbi1 protein_coding protein_coding MGP_C57BL6NJ_T0056612.1 MGP_C57BL6NJ_G0026577.1 mouse_genomes_project 2 96316062 96323155 + MGP_C57BL6NJ_P0056612 Harbi1 protein_coding protein_coding MGP_C57BL6NJ_T0007595.1 MGP_C57BL6NJ_G0006228.1 mouse_genomes_project 2 183253149 183254150 - Gm14272 lincRNA lincRNA MGP_C57BL6NJ_T0007516.1 MGP_C57BL6NJ_G0006162.1 mouse_genomes_project 2 155175544 155178722 + 4933406D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0054733.1 MGP_C57BL6NJ_G0026052.1 mouse_genomes_project 2 32922625 32934562 - MGP_C57BL6NJ_P0054733 Zbtb43 protein_coding protein_coding MGP_C57BL6NJ_T0054734.1 MGP_C57BL6NJ_G0026052.1 mouse_genomes_project 2 32922625 32940741 - MGP_C57BL6NJ_P0054734 Zbtb43 protein_coding protein_coding MGP_C57BL6NJ_T0054735.1 MGP_C57BL6NJ_G0026052.1 mouse_genomes_project 2 32925860 32940714 - MGP_C57BL6NJ_P0054735 Zbtb43 protein_coding protein_coding MGP_C57BL6NJ_T0054736.1 MGP_C57BL6NJ_G0026052.1 mouse_genomes_project 2 32926957 32937291 - MGP_C57BL6NJ_P0054736 Zbtb43 protein_coding protein_coding MGP_C57BL6NJ_T0054737.1 MGP_C57BL6NJ_G0026052.1 mouse_genomes_project 2 32927226 32940768 - MGP_C57BL6NJ_P0054737 Zbtb43 protein_coding protein_coding MGP_C57BL6NJ_T0055918.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79708656 79881064 - MGP_C57BL6NJ_P0055918 Ccdc141 protein_coding protein_coding MGP_C57BL6NJ_T0055919.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79710244 79882966 - MGP_C57BL6NJ_P0055919 Ccdc141 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055920.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79710301 79718672 - MGP_C57BL6NJ_P0055920 Ccdc141 protein_coding protein_coding MGP_C57BL6NJ_T0055921.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79713805 79721451 - Ccdc141 protein_coding processed_transcript MGP_C57BL6NJ_T0055922.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79722141 79729405 - Ccdc141 protein_coding retained_intron MGP_C57BL6NJ_T0055923.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79729402 79744074 - Ccdc141 protein_coding retained_intron MGP_C57BL6NJ_T0055924.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79729402 79744724 - MGP_C57BL6NJ_P0055924 Ccdc141 protein_coding protein_coding MGP_C57BL6NJ_T0055925.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79744964 79881065 - Ccdc141 protein_coding retained_intron MGP_C57BL6NJ_T0055926.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79776014 79881039 - Ccdc141 protein_coding retained_intron MGP_C57BL6NJ_T0055927.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79837367 79881029 - MGP_C57BL6NJ_P0055927 Ccdc141 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055928.1 MGP_C57BL6NJ_G0026290.1 mouse_genomes_project 2 79872411 79881005 - MGP_C57BL6NJ_P0055928 Ccdc141 protein_coding protein_coding MGP_C57BL6NJ_T0057739.1 MGP_C57BL6NJ_G0026834.1 mouse_genomes_project 2 129383663 129417596 + MGP_C57BL6NJ_P0057739 Duox1 protein_coding protein_coding MGP_C57BL6NJ_T0058777.1 MGP_C57BL6NJ_G0027100.1 mouse_genomes_project 2 161875016 161876176 + MGP_C57BL6NJ_P0058777 Id1 protein_coding protein_coding MGP_C57BL6NJ_T0058778.1 MGP_C57BL6NJ_G0027100.1 mouse_genomes_project 2 161875016 161876176 + MGP_C57BL6NJ_P0058778 Id1 protein_coding protein_coding MGP_C57BL6NJ_T0053947.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26090573 26269302 - MGP_C57BL6NJ_P0053947 Vav2 protein_coding protein_coding MGP_C57BL6NJ_T0053948.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26090573 26269181 - MGP_C57BL6NJ_P0053948 Vav2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053949.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26096924 26105650 - Vav2 protein_coding processed_transcript MGP_C57BL6NJ_T0053950.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26097388 26107188 - Vav2 protein_coding processed_transcript MGP_C57BL6NJ_T0053951.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26098050 26100268 - Vav2 protein_coding processed_transcript MGP_C57BL6NJ_T0053952.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26098050 26100345 - Vav2 protein_coding processed_transcript MGP_C57BL6NJ_T0053953.1 MGP_C57BL6NJ_G0025930.1 mouse_genomes_project 2 26133551 26178128 - Vav2 protein_coding processed_transcript MGP_C57BL6NJ_T0013773.1 MGP_C57BL6NJ_G0011818.1 mouse_genomes_project 2 17868343 17868448 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010683.1 MGP_C57BL6NJ_G0008768.1 mouse_genomes_project 2 128422754 128422855 - Gm22953 miRNA miRNA MGP_C57BL6NJ_T0056233.1 MGP_C57BL6NJ_G0026408.1 mouse_genomes_project 2 90882883 90883816 - MGP_C57BL6NJ_P0056233 Olfr1101 protein_coding protein_coding MGP_C57BL6NJ_T0010647.1 MGP_C57BL6NJ_G0008732.1 mouse_genomes_project 2 63249486 63249570 - Gm22403 miRNA miRNA MGP_C57BL6NJ_T0053525.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924889 - MGP_C57BL6NJ_P0053525 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053526.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924956 - MGP_C57BL6NJ_P0053526 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053527.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924864 - MGP_C57BL6NJ_P0053527 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053528.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924864 - MGP_C57BL6NJ_P0053528 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053529.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924889 - MGP_C57BL6NJ_P0053529 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053530.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924889 - MGP_C57BL6NJ_P0053530 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053531.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924864 - MGP_C57BL6NJ_P0053531 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053532.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893777 23924864 - MGP_C57BL6NJ_P0053532 Grin1 protein_coding protein_coding MGP_C57BL6NJ_T0053533.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23893953 23909445 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0053534.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23894654 23899276 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0053535.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23909140 23910822 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0053536.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23909243 23911119 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0053537.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23916569 23924895 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0053538.1 MGP_C57BL6NJ_G0025855.1 mouse_genomes_project 2 23920169 23924932 - Grin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056384.1 MGP_C57BL6NJ_G0026533.1 mouse_genomes_project 2 94218558 94221872 + MGP_C57BL6NJ_P0056384 Olfr1257 protein_coding protein_coding MGP_C57BL6NJ_T0056385.1 MGP_C57BL6NJ_G0026533.1 mouse_genomes_project 2 94220908 94221924 + MGP_C57BL6NJ_P0056385 Olfr1257 protein_coding protein_coding MGP_C57BL6NJ_T0001201.1 MGP_C57BL6NJ_G0001107.1 mouse_genomes_project 2 37781559 37785509 - TEC TEC MGP_C57BL6NJ_T0007399.1 MGP_C57BL6NJ_G0006067.1 mouse_genomes_project 2 75930408 75948303 + Gm13708 lincRNA lincRNA MGP_C57BL6NJ_T0018258.1 MGP_C57BL6NJ_G0015827.1 mouse_genomes_project 2 88436657 88443979 - processed_transcript processed_transcript MGP_C57BL6NJ_T0056821.1 MGP_C57BL6NJ_G0026615.1 mouse_genomes_project 2 107346125 107592803 - MGP_C57BL6NJ_P0056821 Ldlrad3 protein_coding protein_coding MGP_C57BL6NJ_T0056822.1 MGP_C57BL6NJ_G0026615.1 mouse_genomes_project 2 107346125 107592776 - MGP_C57BL6NJ_P0056822 Ldlrad3 protein_coding protein_coding MGP_C57BL6NJ_T0056823.1 MGP_C57BL6NJ_G0026615.1 mouse_genomes_project 2 107512914 107540499 - Ldlrad3 protein_coding processed_transcript MGP_C57BL6NJ_T0056313.1 MGP_C57BL6NJ_G0026477.1 mouse_genomes_project 2 92707255 92708167 + MGP_C57BL6NJ_P0056313 Olfr1186 protein_coding protein_coding MGP_C57BL6NJ_T0007537.1 MGP_C57BL6NJ_G0006179.1 mouse_genomes_project 2 166062521 166066267 - Gm14224 lincRNA lincRNA MGP_C57BL6NJ_T0014087.1 MGP_C57BL6NJ_G0012132.1 mouse_genomes_project 2 137306285 137306809 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060299.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193398151 193401189 + MGP_C57BL6NJ_P0060299 Lime1 protein_coding protein_coding MGP_C57BL6NJ_T0060300.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193399308 193401702 + MGP_C57BL6NJ_P0060300 Lime1 protein_coding protein_coding MGP_C57BL6NJ_T0060301.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193399431 193401628 + Lime1 protein_coding retained_intron MGP_C57BL6NJ_T0060302.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193399431 193401028 + Lime1 protein_coding retained_intron MGP_C57BL6NJ_T0060303.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193399431 193401697 + MGP_C57BL6NJ_P0060303 Lime1 protein_coding protein_coding MGP_C57BL6NJ_T0060304.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193400153 193401535 + MGP_C57BL6NJ_P0060304 Lime1 protein_coding protein_coding MGP_C57BL6NJ_T0060305.1 MGP_C57BL6NJ_G0027443.1 mouse_genomes_project 2 193400559 193401387 + Lime1 protein_coding retained_intron MGP_C57BL6NJ_T0056930.1 MGP_C57BL6NJ_G0026635.1 mouse_genomes_project 2 109664088 109697626 + MGP_C57BL6NJ_P0056930 Cd59a protein_coding protein_coding MGP_C57BL6NJ_T0056931.1 MGP_C57BL6NJ_G0026635.1 mouse_genomes_project 2 109664088 109697631 + MGP_C57BL6NJ_P0056931 Cd59a protein_coding protein_coding MGP_C57BL6NJ_T0056932.1 MGP_C57BL6NJ_G0026635.1 mouse_genomes_project 2 109664127 109696553 + Cd59a protein_coding processed_transcript MGP_C57BL6NJ_T0014153.1 MGP_C57BL6NJ_G0012198.1 mouse_genomes_project 2 161743263 161743480 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004217.1 MGP_C57BL6NJ_G0003732.1 mouse_genomes_project 2 125539323 125543542 - Gm14091 antisense antisense MGP_C57BL6NJ_T0052812.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1687845 1720516 - MGP_C57BL6NJ_P0052812 Prpf18 protein_coding protein_coding MGP_C57BL6NJ_T0052813.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1689724 1720536 - Prpf18 protein_coding processed_transcript MGP_C57BL6NJ_T0052814.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1689815 1720543 - MGP_C57BL6NJ_P0052814 Prpf18 protein_coding protein_coding MGP_C57BL6NJ_T0052815.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1690233 1720411 - MGP_C57BL6NJ_P0052815 Prpf18 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052816.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1704715 1720511 - MGP_C57BL6NJ_P0052816 Prpf18 protein_coding protein_coding MGP_C57BL6NJ_T0052817.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1704739 1720517 - Prpf18 protein_coding processed_transcript MGP_C57BL6NJ_T0052818.1 MGP_C57BL6NJ_G0025729.1 mouse_genomes_project 2 1710334 1720533 - Prpf18 protein_coding processed_transcript MGP_C57BL6NJ_T0055584.1 MGP_C57BL6NJ_G0026221.1 mouse_genomes_project 2 71783682 71811077 - MGP_C57BL6NJ_P0055584 Fastkd1 protein_coding protein_coding MGP_C57BL6NJ_T0055585.1 MGP_C57BL6NJ_G0026221.1 mouse_genomes_project 2 71783804 71810932 - MGP_C57BL6NJ_P0055585 Fastkd1 protein_coding protein_coding MGP_C57BL6NJ_T0055586.1 MGP_C57BL6NJ_G0026221.1 mouse_genomes_project 2 71802835 71811969 - Fastkd1 protein_coding retained_intron MGP_C57BL6NJ_T0055587.1 MGP_C57BL6NJ_G0026221.1 mouse_genomes_project 2 71807503 71811987 - Fastkd1 protein_coding retained_intron MGP_C57BL6NJ_T0058760.1 MGP_C57BL6NJ_G0027091.1 mouse_genomes_project 2 161700214 161700415 + MGP_C57BL6NJ_P0058760 Gm17416 protein_coding protein_coding MGP_C57BL6NJ_T0004140.1 MGP_C57BL6NJ_G0003682.1 mouse_genomes_project 2 67972130 67977108 + Gm13618 antisense antisense MGP_C57BL6NJ_T0102224.1 MGP_C57BL6NJ_G0040227.1 mouse_genomes_project 2 159262157 159262837 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102225.1 MGP_C57BL6NJ_G0040227.1 mouse_genomes_project 2 159262390 159263146 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0056330.1 MGP_C57BL6NJ_G0026493.1 mouse_genomes_project 2 93242498 93243434 - MGP_C57BL6NJ_P0056330 Olfr1211 protein_coding protein_coding MGP_C57BL6NJ_T0056401.1 MGP_C57BL6NJ_G0026543.1 mouse_genomes_project 2 94515752 94516679 - MGP_C57BL6NJ_P0056401 Olfr32 protein_coding protein_coding MGP_C57BL6NJ_T0056876.1 MGP_C57BL6NJ_G0026626.1 mouse_genomes_project 2 109086472 109245562 + MGP_C57BL6NJ_P0056876 Abtb2 protein_coding protein_coding MGP_C57BL6NJ_T0056877.1 MGP_C57BL6NJ_G0026626.1 mouse_genomes_project 2 109242173 109244356 + Abtb2 protein_coding processed_transcript MGP_C57BL6NJ_T0056878.1 MGP_C57BL6NJ_G0026626.1 mouse_genomes_project 2 109242219 109245562 + Abtb2 protein_coding processed_transcript MGP_C57BL6NJ_T0100173.1 MGP_C57BL6NJ_G0038219.1 mouse_genomes_project 2 4697565 4697662 + Gm24340 snRNA snRNA MGP_C57BL6NJ_T0004267.1 MGP_C57BL6NJ_G0003767.1 mouse_genomes_project 2 154150003 154154334 - Gm14092 antisense antisense MGP_C57BL6NJ_T0101480.1 MGP_C57BL6NJ_G0039526.1 mouse_genomes_project 2 32666271 32666408 - Gm23546 snoRNA snoRNA MGP_C57BL6NJ_T0054935.1 MGP_C57BL6NJ_G0026093.1 mouse_genomes_project 2 36481067 36482009 - MGP_C57BL6NJ_P0054935 Olfr3 protein_coding protein_coding MGP_C57BL6NJ_T0059893.1 MGP_C57BL6NJ_G0027348.1 mouse_genomes_project 2 179143316 179145282 + MGP_C57BL6NJ_P0059893 Mocs3 protein_coding protein_coding MGP_C57BL6NJ_T0052951.1 MGP_C57BL6NJ_G0025755.1 mouse_genomes_project 2 7699692 7808299 + MGP_C57BL6NJ_P0052951 Itih5 protein_coding protein_coding MGP_C57BL6NJ_T0056247.1 MGP_C57BL6NJ_G0026422.1 mouse_genomes_project 2 91276802 91277726 + MGP_C57BL6NJ_P0056247 Olfr1118 protein_coding protein_coding MGP_C57BL6NJ_T0055963.1 MGP_C57BL6NJ_G0026295.1 mouse_genomes_project 2 82148691 82151118 + Itga4 protein_coding processed_transcript MGP_C57BL6NJ_T0055964.1 MGP_C57BL6NJ_G0026295.1 mouse_genomes_project 2 82148765 82241438 + MGP_C57BL6NJ_P0055964 Itga4 protein_coding protein_coding MGP_C57BL6NJ_T0055965.1 MGP_C57BL6NJ_G0026295.1 mouse_genomes_project 2 82148837 82170179 + Itga4 protein_coding processed_transcript MGP_C57BL6NJ_T0055966.1 MGP_C57BL6NJ_G0026295.1 mouse_genomes_project 2 82148986 82196478 + Itga4 protein_coding processed_transcript MGP_C57BL6NJ_T0055967.1 MGP_C57BL6NJ_G0026295.1 mouse_genomes_project 2 82149212 82196182 + Itga4 protein_coding processed_transcript MGP_C57BL6NJ_T0001227.1 MGP_C57BL6NJ_G0001132.1 mouse_genomes_project 2 136725037 136726078 - TEC TEC MGP_C57BL6NJ_T0013881.1 MGP_C57BL6NJ_G0011926.1 mouse_genomes_project 2 60215149 60215478 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013943.1 MGP_C57BL6NJ_G0011988.1 mouse_genomes_project 2 82270465 82270996 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010678.1 MGP_C57BL6NJ_G0008763.1 mouse_genomes_project 2 122100489 122100578 + Mir1951 miRNA miRNA MGP_C57BL6NJ_T0055221.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53287502 53564243 - MGP_C57BL6NJ_P0055221 Cacnb4 protein_coding protein_coding MGP_C57BL6NJ_T0055222.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53287507 53433468 - MGP_C57BL6NJ_P0055222 Cacnb4 protein_coding protein_coding MGP_C57BL6NJ_T0055223.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53287507 53564478 - MGP_C57BL6NJ_P0055223 Cacnb4 protein_coding protein_coding MGP_C57BL6NJ_T0055224.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53287507 53433475 - MGP_C57BL6NJ_P0055224 Cacnb4 protein_coding protein_coding MGP_C57BL6NJ_T0055225.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53431094 53431617 - Cacnb4 protein_coding processed_transcript MGP_C57BL6NJ_T0055226.1 MGP_C57BL6NJ_G0026152.1 mouse_genomes_project 2 53563366 53563804 - Cacnb4 protein_coding processed_transcript MGP_C57BL6NJ_T0056301.1 MGP_C57BL6NJ_G0026466.1 mouse_genomes_project 2 92307853 92310222 - MGP_C57BL6NJ_P0056301 Olfr1170 protein_coding protein_coding MGP_C57BL6NJ_T0101536.1 MGP_C57BL6NJ_G0039582.1 mouse_genomes_project 2 167583280 167583414 - Gm25407 snoRNA snoRNA MGP_C57BL6NJ_T0054926.1 MGP_C57BL6NJ_G0026085.1 mouse_genomes_project 2 36139039 36139981 - MGP_C57BL6NJ_P0054926 Olfr341 protein_coding protein_coding MGP_C57BL6NJ_T0013834.1 MGP_C57BL6NJ_G0011879.1 mouse_genomes_project 2 39541650 39541770 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059194.1 MGP_C57BL6NJ_G0027187.1 mouse_genomes_project 2 165915229 165978877 + MGP_C57BL6NJ_P0059194 Cnbd2 protein_coding protein_coding MGP_C57BL6NJ_T0059195.1 MGP_C57BL6NJ_G0027187.1 mouse_genomes_project 2 165915508 165945875 + Cnbd2 protein_coding processed_transcript MGP_C57BL6NJ_T0059196.1 MGP_C57BL6NJ_G0027187.1 mouse_genomes_project 2 165915547 165924758 + Cnbd2 protein_coding retained_intron MGP_C57BL6NJ_T0059197.1 MGP_C57BL6NJ_G0027187.1 mouse_genomes_project 2 165915563 165978880 + MGP_C57BL6NJ_P0059197 Cnbd2 protein_coding protein_coding MGP_C57BL6NJ_T0059198.1 MGP_C57BL6NJ_G0027187.1 mouse_genomes_project 2 165938334 165946476 + Cnbd2 protein_coding processed_transcript MGP_C57BL6NJ_T0057866.1 MGP_C57BL6NJ_G0026864.1 mouse_genomes_project 2 134066126 134124084 + Usp8 protein_coding processed_transcript MGP_C57BL6NJ_T0057867.1 MGP_C57BL6NJ_G0026864.1 mouse_genomes_project 2 134066141 134124133 + MGP_C57BL6NJ_P0057867 Usp8 protein_coding protein_coding MGP_C57BL6NJ_T0057868.1 MGP_C57BL6NJ_G0026864.1 mouse_genomes_project 2 134066158 134124126 + MGP_C57BL6NJ_P0057868 Usp8 protein_coding protein_coding MGP_C57BL6NJ_T0010658.1 MGP_C57BL6NJ_G0008743.1 mouse_genomes_project 2 83609344 83609430 - Mir684-1 miRNA miRNA MGP_C57BL6NJ_T0058781.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161925369 161980067 - MGP_C57BL6NJ_P0058781 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058782.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161925373 161979005 - MGP_C57BL6NJ_P0058782 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058783.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161926112 161976877 - Bcl2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0058784.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161976468 161978980 - MGP_C57BL6NJ_P0058784 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058785.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161976703 161978652 - MGP_C57BL6NJ_P0058785 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058786.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161977768 161979451 - MGP_C57BL6NJ_P0058786 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058787.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161977870 161978991 - MGP_C57BL6NJ_P0058787 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058788.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161978042 161978957 - MGP_C57BL6NJ_P0058788 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0058789.1 MGP_C57BL6NJ_G0027102.1 mouse_genomes_project 2 161978098 161980049 - MGP_C57BL6NJ_P0058789 Bcl2l1 protein_coding protein_coding MGP_C57BL6NJ_T0060175.1 MGP_C57BL6NJ_G0027422.1 mouse_genomes_project 2 192650895 192660269 + MGP_C57BL6NJ_P0060175 Gid8 protein_coding protein_coding MGP_C57BL6NJ_T0060176.1 MGP_C57BL6NJ_G0027422.1 mouse_genomes_project 2 192652465 192655518 + Gid8 protein_coding processed_transcript MGP_C57BL6NJ_T0060177.1 MGP_C57BL6NJ_G0027422.1 mouse_genomes_project 2 192653324 192660266 + MGP_C57BL6NJ_P0060177 Gid8 protein_coding protein_coding MGP_C57BL6NJ_T0058028.1 MGP_C57BL6NJ_G0026905.1 mouse_genomes_project 2 136651209 136655644 + MGP_C57BL6NJ_P0058028 Chchd5 protein_coding protein_coding MGP_C57BL6NJ_T0058029.1 MGP_C57BL6NJ_G0026905.1 mouse_genomes_project 2 136651313 136655523 + Chchd5 protein_coding processed_transcript MGP_C57BL6NJ_T0058030.1 MGP_C57BL6NJ_G0026905.1 mouse_genomes_project 2 136651359 136654990 + Chchd5 protein_coding retained_intron MGP_C57BL6NJ_T0053545.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23974310 23978380 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053546.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23974321 23978366 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053547.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23974324 23974909 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053548.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23974324 23978394 - MGP_C57BL6NJ_P0053548 Dpp7 protein_coding protein_coding MGP_C57BL6NJ_T0053549.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23975188 23978093 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053550.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23975394 23978332 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053551.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23976502 23978332 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053552.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23977031 23978388 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053553.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23977476 23978381 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0053554.1 MGP_C57BL6NJ_G0025857.1 mouse_genomes_project 2 23977737 23978367 - Dpp7 protein_coding processed_transcript MGP_C57BL6NJ_T0055991.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82770019 83086553 - MGP_C57BL6NJ_P0055991 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055992.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82770020 83086448 - MGP_C57BL6NJ_P0055992 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055993.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82770022 82901468 - MGP_C57BL6NJ_P0055993 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055994.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82770028 83086553 - MGP_C57BL6NJ_P0055994 Pde1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055995.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82772121 83087072 - MGP_C57BL6NJ_P0055995 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055996.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82790693 82845160 - MGP_C57BL6NJ_P0055996 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055997.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82790693 82845160 - MGP_C57BL6NJ_P0055997 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055998.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82796704 82867799 - MGP_C57BL6NJ_P0055998 Pde1a protein_coding protein_coding MGP_C57BL6NJ_T0055999.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82841311 82983331 - Pde1a protein_coding processed_transcript MGP_C57BL6NJ_T0056000.1 MGP_C57BL6NJ_G0026300.1 mouse_genomes_project 2 82852317 83087072 - Pde1a protein_coding processed_transcript MGP_C57BL6NJ_T0001190.1 MGP_C57BL6NJ_G0001096.1 mouse_genomes_project 2 23437195 23438993 - TEC TEC MGP_C57BL6NJ_T0056103.1 MGP_C57BL6NJ_G0026325.1 mouse_genomes_project 2 88072021 88076619 + MGP_C57BL6NJ_P0056103 Ypel4 protein_coding protein_coding MGP_C57BL6NJ_T0056104.1 MGP_C57BL6NJ_G0026325.1 mouse_genomes_project 2 88072061 88076619 + MGP_C57BL6NJ_P0056104 Ypel4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056105.1 MGP_C57BL6NJ_G0026325.1 mouse_genomes_project 2 88072086 88073590 + Ypel4 protein_coding processed_transcript MGP_C57BL6NJ_T0056106.1 MGP_C57BL6NJ_G0026325.1 mouse_genomes_project 2 88072190 88076613 + Ypel4 protein_coding retained_intron MGP_C57BL6NJ_T0057572.1 MGP_C57BL6NJ_G0026802.1 mouse_genomes_project 2 128074907 128086808 - MGP_C57BL6NJ_P0057572 Lcmt2 protein_coding protein_coding MGP_C57BL6NJ_T0057573.1 MGP_C57BL6NJ_G0026802.1 mouse_genomes_project 2 128084027 128087083 - MGP_C57BL6NJ_P0057573 Lcmt2 protein_coding protein_coding MGP_C57BL6NJ_T0056332.1 MGP_C57BL6NJ_G0026495.1 mouse_genomes_project 2 93287241 93294545 - MGP_C57BL6NJ_P0056332 protein_coding protein_coding MGP_C57BL6NJ_T0056334.1 MGP_C57BL6NJ_G0026495.1 mouse_genomes_project 2 93287740 93294515 - protein_coding processed_transcript MGP_C57BL6NJ_T0056335.1 MGP_C57BL6NJ_G0026495.1 mouse_genomes_project 2 93287957 93294539 - protein_coding processed_transcript MGP_C57BL6NJ_T0055848.1 MGP_C57BL6NJ_G0026274.1 mouse_genomes_project 2 77393709 77451852 + MGP_C57BL6NJ_P0055848 Mtx2 protein_coding protein_coding MGP_C57BL6NJ_T0055849.1 MGP_C57BL6NJ_G0026274.1 mouse_genomes_project 2 77393736 77442235 + Mtx2 protein_coding retained_intron MGP_C57BL6NJ_T0055850.1 MGP_C57BL6NJ_G0026274.1 mouse_genomes_project 2 77442401 77449925 + Mtx2 protein_coding retained_intron MGP_C57BL6NJ_T0055232.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 53754446 54047159 + MGP_C57BL6NJ_P0055232 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0055233.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 53754454 54047557 + MGP_C57BL6NJ_P0055233 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0055234.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 53754454 54045233 + MGP_C57BL6NJ_P0055234 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0055235.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 53754729 54047166 + MGP_C57BL6NJ_P0055235 Fmnl2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055236.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 54027538 54047159 + MGP_C57BL6NJ_P0055236 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0055237.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 54033129 54047159 + MGP_C57BL6NJ_P0055237 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0055238.1 MGP_C57BL6NJ_G0026154.1 mouse_genomes_project 2 54039376 54045558 + MGP_C57BL6NJ_P0055238 Fmnl2 protein_coding protein_coding MGP_C57BL6NJ_T0004144.1 MGP_C57BL6NJ_G0003686.1 mouse_genomes_project 2 70442112 70443783 + Gm13596 antisense antisense MGP_C57BL6NJ_T0059564.1 MGP_C57BL6NJ_G0027274.1 mouse_genomes_project 2 174778718 174800575 - MGP_C57BL6NJ_P0059564 Sdc4 protein_coding protein_coding MGP_C57BL6NJ_T0059565.1 MGP_C57BL6NJ_G0027274.1 mouse_genomes_project 2 174780365 174801276 - Sdc4 protein_coding processed_transcript MGP_C57BL6NJ_T0056287.1 MGP_C57BL6NJ_G0026453.1 mouse_genomes_project 2 91947237 92045522 - MGP_C57BL6NJ_P0056287 Olfr1154 protein_coding protein_coding MGP_C57BL6NJ_T0057128.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118512983 118608696 + MGP_C57BL6NJ_P0057128 Slc12a6 protein_coding protein_coding MGP_C57BL6NJ_T0057130.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118513900 118605598 + MGP_C57BL6NJ_P0057130 Slc12a6 protein_coding protein_coding MGP_C57BL6NJ_T0057131.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118513977 118614749 + MGP_C57BL6NJ_P0057131 Slc12a6 protein_coding protein_coding MGP_C57BL6NJ_T0057132.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118531713 118614749 + MGP_C57BL6NJ_P0057132 Slc12a6 protein_coding protein_coding MGP_C57BL6NJ_T0057133.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118594956 118601200 + Slc12a6 protein_coding processed_transcript MGP_C57BL6NJ_T0057134.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118602094 118603807 + Slc12a6 protein_coding processed_transcript MGP_C57BL6NJ_T0057135.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118603770 118606456 + Slc12a6 protein_coding processed_transcript MGP_C57BL6NJ_T0057136.1 MGP_C57BL6NJ_G0026708.1 mouse_genomes_project 2 118605763 118614756 + Slc12a6 protein_coding retained_intron MGP_C57BL6NJ_T0053344.1 MGP_C57BL6NJ_G0025823.1 mouse_genomes_project 2 22781975 22785870 + MGP_C57BL6NJ_P0053344 Il1f5 protein_coding protein_coding MGP_C57BL6NJ_T0053345.1 MGP_C57BL6NJ_G0025823.1 mouse_genomes_project 2 22782232 22784040 + Il1f5 protein_coding retained_intron MGP_C57BL6NJ_T0053346.1 MGP_C57BL6NJ_G0025823.1 mouse_genomes_project 2 22782243 22786591 + Il1f5 protein_coding processed_transcript MGP_C57BL6NJ_T0053347.1 MGP_C57BL6NJ_G0025823.1 mouse_genomes_project 2 22782460 22786334 + MGP_C57BL6NJ_P0053347 Il1f5 protein_coding protein_coding MGP_C57BL6NJ_T0007303.1 MGP_C57BL6NJ_G0005992.1 mouse_genomes_project 2 5062791 5125352 - Gm13211 lincRNA lincRNA MGP_C57BL6NJ_T0060007.1 MGP_C57BL6NJ_G0027381.1 mouse_genomes_project 2 185025273 185046402 - MGP_C57BL6NJ_P0060007 Ankrd60 protein_coding protein_coding MGP_C57BL6NJ_T0060008.1 MGP_C57BL6NJ_G0027381.1 mouse_genomes_project 2 185040590 185046477 - Ankrd60 protein_coding processed_transcript MGP_C57BL6NJ_T0007301.1 MGP_C57BL6NJ_G0005990.1 mouse_genomes_project 2 4385333 4391757 + Gm26565 lincRNA lincRNA MGP_C57BL6NJ_T0018219.1 MGP_C57BL6NJ_G0015800.1 mouse_genomes_project 2 28268873 28276760 - 6530402F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018220.1 MGP_C57BL6NJ_G0015800.1 mouse_genomes_project 2 28274676 28276773 - 6530402F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0010567.1 MGP_C57BL6NJ_G0008652.1 mouse_genomes_project 2 8036319 8036417 + Mir669l miRNA miRNA MGP_C57BL6NJ_T0056236.1 MGP_C57BL6NJ_G0026411.1 mouse_genomes_project 2 90933319 90934258 - MGP_C57BL6NJ_P0056236 Olfr1105 protein_coding protein_coding MGP_C57BL6NJ_T0007533.1 MGP_C57BL6NJ_G0006176.1 mouse_genomes_project 2 164152363 164153663 - Gm14216 lincRNA lincRNA MGP_C57BL6NJ_T0007534.1 MGP_C57BL6NJ_G0006176.1 mouse_genomes_project 2 164152381 164169854 - Gm14216 lincRNA lincRNA MGP_C57BL6NJ_T0054849.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34782736 34803652 - MGP_C57BL6NJ_P0054849 Rab14 protein_coding protein_coding MGP_C57BL6NJ_T0054850.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34782736 34803652 - MGP_C57BL6NJ_P0054850 Rab14 protein_coding protein_coding MGP_C57BL6NJ_T0054851.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34784660 34786582 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0054852.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34785721 34786680 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0054853.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34786134 34803504 - Rab14 protein_coding retained_intron MGP_C57BL6NJ_T0054854.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34788816 34795195 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0054855.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34790237 34793954 - Rab14 protein_coding retained_intron MGP_C57BL6NJ_T0054856.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34792431 34803321 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0054857.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34794052 34795375 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0054858.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34798511 34803514 - Rab14 protein_coding retained_intron MGP_C57BL6NJ_T0054859.1 MGP_C57BL6NJ_G0026068.1 mouse_genomes_project 2 34802405 34803510 - Rab14 protein_coding processed_transcript MGP_C57BL6NJ_T0010581.1 MGP_C57BL6NJ_G0008666.1 mouse_genomes_project 2 8063044 8063153 + Mir669c miRNA miRNA MGP_C57BL6NJ_T0059276.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 166990521 167101937 - MGP_C57BL6NJ_P0059276 Mroh8 protein_coding protein_coding MGP_C57BL6NJ_T0059277.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 166996495 167101219 - MGP_C57BL6NJ_P0059277 Mroh8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059278.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 167007498 167008912 - Mroh8 protein_coding processed_transcript MGP_C57BL6NJ_T0059279.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 167043179 167101677 - Mroh8 protein_coding processed_transcript MGP_C57BL6NJ_T0059280.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 167061392 167078106 - Mroh8 protein_coding processed_transcript MGP_C57BL6NJ_T0059281.1 MGP_C57BL6NJ_G0027202.1 mouse_genomes_project 2 167085242 167101937 - Mroh8 protein_coding processed_transcript MGP_C57BL6NJ_T0007376.1 MGP_C57BL6NJ_G0006048.1 mouse_genomes_project 2 53756309 53760101 - Gm26603 lincRNA lincRNA MGP_C57BL6NJ_T0014147.1 MGP_C57BL6NJ_G0012192.1 mouse_genomes_project 2 159939612 159940196 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013894.1 MGP_C57BL6NJ_G0011939.1 mouse_genomes_project 2 62644316 62644607 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013944.1 MGP_C57BL6NJ_G0011989.1 mouse_genomes_project 2 83089543 83090366 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018282.1 MGP_C57BL6NJ_G0015841.1 mouse_genomes_project 2 99211772 99217304 + 2810002D19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0057335.1 MGP_C57BL6NJ_G0026759.1 mouse_genomes_project 2 125989603 126001760 + MGP_C57BL6NJ_P0057335 Spint1 protein_coding protein_coding MGP_C57BL6NJ_T0057336.1 MGP_C57BL6NJ_G0026759.1 mouse_genomes_project 2 125989718 126001441 + MGP_C57BL6NJ_P0057336 Spint1 protein_coding protein_coding MGP_C57BL6NJ_T0057337.1 MGP_C57BL6NJ_G0026759.1 mouse_genomes_project 2 125989794 126001773 + MGP_C57BL6NJ_P0057337 Spint1 protein_coding protein_coding MGP_C57BL6NJ_T0057338.1 MGP_C57BL6NJ_G0026759.1 mouse_genomes_project 2 125998618 126001148 + Spint1 protein_coding retained_intron MGP_C57BL6NJ_T0057339.1 MGP_C57BL6NJ_G0026759.1 mouse_genomes_project 2 126000450 126001295 + Spint1 protein_coding retained_intron MGP_C57BL6NJ_T0056699.1 MGP_C57BL6NJ_G0026593.1 mouse_genomes_project 2 97660950 97747523 - MGP_C57BL6NJ_P0056699 Prdm11 protein_coding protein_coding MGP_C57BL6NJ_T0056700.1 MGP_C57BL6NJ_G0026593.1 mouse_genomes_project 2 97671543 97748096 - MGP_C57BL6NJ_P0056700 Prdm11 protein_coding protein_coding MGP_C57BL6NJ_T0056701.1 MGP_C57BL6NJ_G0026593.1 mouse_genomes_project 2 97682857 97714527 - MGP_C57BL6NJ_P0056701 Prdm11 protein_coding protein_coding MGP_C57BL6NJ_T0056702.1 MGP_C57BL6NJ_G0026593.1 mouse_genomes_project 2 97708120 97714554 - Prdm11 protein_coding processed_transcript MGP_C57BL6NJ_T0056703.1 MGP_C57BL6NJ_G0026593.1 mouse_genomes_project 2 97713270 97748119 - MGP_C57BL6NJ_P0056703 Prdm11 protein_coding protein_coding MGP_C57BL6NJ_T0059467.1 MGP_C57BL6NJ_G0027240.1 mouse_genomes_project 2 173291979 173325384 + MGP_C57BL6NJ_P0059467 Mybl2 protein_coding protein_coding MGP_C57BL6NJ_T0059468.1 MGP_C57BL6NJ_G0027240.1 mouse_genomes_project 2 173296659 173303317 + Mybl2 protein_coding processed_transcript MGP_C57BL6NJ_T0059469.1 MGP_C57BL6NJ_G0027240.1 mouse_genomes_project 2 173307071 173311983 + Mybl2 protein_coding retained_intron MGP_C57BL6NJ_T0059470.1 MGP_C57BL6NJ_G0027240.1 mouse_genomes_project 2 173313584 173323724 + MGP_C57BL6NJ_P0059470 Mybl2 protein_coding protein_coding MGP_C57BL6NJ_T0059471.1 MGP_C57BL6NJ_G0027240.1 mouse_genomes_project 2 173313992 173321784 + Mybl2 protein_coding retained_intron MGP_C57BL6NJ_T0059544.1 MGP_C57BL6NJ_G0027265.1 mouse_genomes_project 2 174561461 174563999 - MGP_C57BL6NJ_P0059544 Svs2 protein_coding protein_coding MGP_C57BL6NJ_T0059545.1 MGP_C57BL6NJ_G0027265.1 mouse_genomes_project 2 174562060 174563797 - MGP_C57BL6NJ_P0059545 Svs2 protein_coding protein_coding MGP_C57BL6NJ_T0014114.1 MGP_C57BL6NJ_G0012159.1 mouse_genomes_project 2 150206738 150207202 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100198.1 MGP_C57BL6NJ_G0038244.1 mouse_genomes_project 2 82258965 82259068 + Gm22606 snRNA snRNA MGP_C57BL6NJ_T0053468.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23796855 23808600 - MGP_C57BL6NJ_P0053468 Nelfb protein_coding protein_coding MGP_C57BL6NJ_T0053469.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23796856 23808600 - MGP_C57BL6NJ_P0053469 Nelfb protein_coding protein_coding MGP_C57BL6NJ_T0053470.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23796859 23808492 - Nelfb protein_coding retained_intron MGP_C57BL6NJ_T0053471.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23797181 23800937 - Nelfb protein_coding retained_intron MGP_C57BL6NJ_T0053472.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23797828 23801065 - MGP_C57BL6NJ_P0053472 Nelfb protein_coding protein_coding MGP_C57BL6NJ_T0053473.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23798297 23800745 - Nelfb protein_coding retained_intron MGP_C57BL6NJ_T0053474.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23801034 23807837 - MGP_C57BL6NJ_P0053474 Nelfb protein_coding protein_coding MGP_C57BL6NJ_T0053475.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23801094 23807185 - Nelfb protein_coding processed_transcript MGP_C57BL6NJ_T0053476.1 MGP_C57BL6NJ_G0025840.1 mouse_genomes_project 2 23802310 23807811 - Nelfb protein_coding retained_intron MGP_C57BL6NJ_T0010570.1 MGP_C57BL6NJ_G0008655.1 mouse_genomes_project 2 8042876 8042966 + Mir297a-2 miRNA miRNA MGP_C57BL6NJ_T0055828.1 MGP_C57BL6NJ_G0026264.1 mouse_genomes_project 2 77216638 77219928 + MGP_C57BL6NJ_P0055828 Hoxd13 protein_coding protein_coding MGP_C57BL6NJ_T0010686.1 MGP_C57BL6NJ_G0008771.1 mouse_genomes_project 2 134272833 134272969 - Mir3473g miRNA miRNA MGP_C57BL6NJ_T0053070.1 MGP_C57BL6NJ_G0025768.1 mouse_genomes_project 2 10746128 10754601 - MGP_C57BL6NJ_P0053070 C1ql3 protein_coding protein_coding MGP_C57BL6NJ_T0099069.1 MGP_C57BL6NJ_G0037133.1 mouse_genomes_project 2 19531573 19531704 + Gm25368 rRNA rRNA MGP_C57BL6NJ_T0053160.1 MGP_C57BL6NJ_G0025786.1 mouse_genomes_project 2 16037935 16038461 - MGP_C57BL6NJ_P0053160 Gm14501 protein_coding protein_coding MGP_C57BL6NJ_T0059561.1 MGP_C57BL6NJ_G0027273.1 mouse_genomes_project 2 174756352 174767908 + Rbpjl protein_coding retained_intron MGP_C57BL6NJ_T0059562.1 MGP_C57BL6NJ_G0027273.1 mouse_genomes_project 2 174756405 174768565 + MGP_C57BL6NJ_P0059562 Rbpjl protein_coding protein_coding MGP_C57BL6NJ_T0059563.1 MGP_C57BL6NJ_G0027273.1 mouse_genomes_project 2 174756420 174764551 + Rbpjl protein_coding processed_transcript MGP_C57BL6NJ_T0054301.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582058 29619985 + MGP_C57BL6NJ_P0054301 Ptpa protein_coding protein_coding MGP_C57BL6NJ_T0054302.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582150 29619986 + MGP_C57BL6NJ_P0054302 Ptpa protein_coding protein_coding MGP_C57BL6NJ_T0054303.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582156 29601236 + MGP_C57BL6NJ_P0054303 Ptpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054304.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582161 29619797 + MGP_C57BL6NJ_P0054304 Ptpa protein_coding protein_coding MGP_C57BL6NJ_T0054305.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582215 29619984 + Ptpa protein_coding retained_intron MGP_C57BL6NJ_T0054306.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29582321 29597608 + Ptpa protein_coding processed_transcript MGP_C57BL6NJ_T0054307.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29597559 29610281 + Ptpa protein_coding retained_intron MGP_C57BL6NJ_T0054308.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29610408 29619130 + MGP_C57BL6NJ_P0054308 Ptpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054309.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29614032 29619311 + MGP_C57BL6NJ_P0054309 Ptpa protein_coding protein_coding MGP_C57BL6NJ_T0054310.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29614914 29618986 + MGP_C57BL6NJ_P0054310 Ptpa protein_coding protein_coding MGP_C57BL6NJ_T0054311.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29615398 29619079 + Ptpa protein_coding processed_transcript MGP_C57BL6NJ_T0054312.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29617835 29619254 + Ptpa protein_coding processed_transcript MGP_C57BL6NJ_T0054313.1 MGP_C57BL6NJ_G0025988.1 mouse_genomes_project 2 29617895 29618956 + Ptpa protein_coding processed_transcript MGP_C57BL6NJ_T0018313.1 MGP_C57BL6NJ_G0015855.1 mouse_genomes_project 2 127771213 127793641 + AV039307 processed_transcript processed_transcript MGP_C57BL6NJ_T0018314.1 MGP_C57BL6NJ_G0015855.1 mouse_genomes_project 2 127771225 127793680 + AV039307 processed_transcript processed_transcript MGP_C57BL6NJ_T0018315.1 MGP_C57BL6NJ_G0015855.1 mouse_genomes_project 2 127793318 127793642 + AV039307 processed_transcript processed_transcript MGP_C57BL6NJ_T0058736.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161426581 161433245 - Rbck1 protein_coding retained_intron MGP_C57BL6NJ_T0058737.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161426581 161442660 - MGP_C57BL6NJ_P0058737 Rbck1 protein_coding protein_coding MGP_C57BL6NJ_T0058738.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161426581 161442901 - MGP_C57BL6NJ_P0058738 Rbck1 protein_coding protein_coding MGP_C57BL6NJ_T0058739.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161428559 161433746 - Rbck1 protein_coding retained_intron MGP_C57BL6NJ_T0058740.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161429027 161434612 - MGP_C57BL6NJ_P0058740 Rbck1 protein_coding protein_coding MGP_C57BL6NJ_T0058741.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161433185 161434864 - Rbck1 protein_coding retained_intron MGP_C57BL6NJ_T0058742.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161434787 161438005 - Rbck1 protein_coding processed_transcript MGP_C57BL6NJ_T0058743.1 MGP_C57BL6NJ_G0027079.1 mouse_genomes_project 2 161436651 161442632 - Rbck1 protein_coding processed_transcript MGP_C57BL6NJ_T0001175.1 MGP_C57BL6NJ_G0001081.1 mouse_genomes_project 2 11834066 11838030 - TEC TEC MGP_C57BL6NJ_T0018265.1 MGP_C57BL6NJ_G0015833.1 mouse_genomes_project 2 93440642 93445458 - Gm13764 processed_transcript processed_transcript MGP_C57BL6NJ_T0100183.1 MGP_C57BL6NJ_G0038229.1 mouse_genomes_project 2 29016584 29016681 - Gm23865 snRNA snRNA MGP_C57BL6NJ_T0058604.1 MGP_C57BL6NJ_G0027040.1 mouse_genomes_project 2 157671337 157675561 - MGP_C57BL6NJ_P0058604 9230104L09Rik protein_coding protein_coding MGP_C57BL6NJ_T0058605.1 MGP_C57BL6NJ_G0027040.1 mouse_genomes_project 2 157671530 157693518 - 9230104L09Rik protein_coding processed_transcript MGP_C57BL6NJ_T0052992.1 MGP_C57BL6NJ_G0025760.1 mouse_genomes_project 2 9286269 9286928 - MGP_C57BL6NJ_P0052992 Gm17490 protein_coding protein_coding MGP_C57BL6NJ_T0007377.1 MGP_C57BL6NJ_G0006049.1 mouse_genomes_project 2 56519395 56529825 + Gm14033 lincRNA lincRNA MGP_C57BL6NJ_T0007378.1 MGP_C57BL6NJ_G0006049.1 mouse_genomes_project 2 56519420 56541910 + Gm14033 lincRNA lincRNA MGP_C57BL6NJ_T0013957.1 MGP_C57BL6NJ_G0012002.1 mouse_genomes_project 2 86652181 86652391 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052770.1 MGP_C57BL6NJ_G0025724.1 mouse_genomes_project 2 424690 444602 - MGP_C57BL6NJ_P0052770 Suv39h2 protein_coding protein_coding MGP_C57BL6NJ_T0052771.1 MGP_C57BL6NJ_G0025724.1 mouse_genomes_project 2 426455 444531 - MGP_C57BL6NJ_P0052771 Suv39h2 protein_coding protein_coding MGP_C57BL6NJ_T0052772.1 MGP_C57BL6NJ_G0025724.1 mouse_genomes_project 2 426456 443990 - MGP_C57BL6NJ_P0052772 Suv39h2 protein_coding protein_coding MGP_C57BL6NJ_T0052773.1 MGP_C57BL6NJ_G0025724.1 mouse_genomes_project 2 426478 444540 - MGP_C57BL6NJ_P0052773 Suv39h2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055772.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75807648 75853866 - MGP_C57BL6NJ_P0055772 Gpr155 protein_coding protein_coding MGP_C57BL6NJ_T0055773.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75808100 75853706 - MGP_C57BL6NJ_P0055773 Gpr155 protein_coding protein_coding MGP_C57BL6NJ_T0055774.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75809132 75853737 - MGP_C57BL6NJ_P0055774 Gpr155 protein_coding protein_coding MGP_C57BL6NJ_T0055775.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75813789 75828385 - MGP_C57BL6NJ_P0055775 Gpr155 protein_coding protein_coding MGP_C57BL6NJ_T0055776.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75817034 75853692 - Gpr155 protein_coding processed_transcript MGP_C57BL6NJ_T0055777.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75817034 75853692 - Gpr155 protein_coding retained_intron MGP_C57BL6NJ_T0055778.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75828293 75837425 - Gpr155 protein_coding processed_transcript MGP_C57BL6NJ_T0055779.1 MGP_C57BL6NJ_G0026256.1 mouse_genomes_project 2 75848699 75853705 - Gpr155 protein_coding retained_intron MGP_C57BL6NJ_T0007322.1 MGP_C57BL6NJ_G0006007.1 mouse_genomes_project 2 21081579 21091701 + lincRNA lincRNA MGP_C57BL6NJ_T0007323.1 MGP_C57BL6NJ_G0006007.1 mouse_genomes_project 2 21091399 21091669 + lincRNA lincRNA MGP_C57BL6NJ_T0014206.1 MGP_C57BL6NJ_G0012251.1 mouse_genomes_project 2 186697636 186698191 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058934.1 MGP_C57BL6NJ_G0027146.1 mouse_genomes_project 2 164023893 164068461 + MGP_C57BL6NJ_P0058934 Zfp341 protein_coding protein_coding MGP_C57BL6NJ_T0058935.1 MGP_C57BL6NJ_G0027146.1 mouse_genomes_project 2 164023952 164068418 + MGP_C57BL6NJ_P0058935 Zfp341 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058936.1 MGP_C57BL6NJ_G0027146.1 mouse_genomes_project 2 164023966 164068418 + MGP_C57BL6NJ_P0058936 Zfp341 protein_coding protein_coding MGP_C57BL6NJ_T0011761.1 MGP_C57BL6NJ_G0009846.1 mouse_genomes_project 2 50587064 50587174 - Gm25223 misc_RNA misc_RNA MGP_C57BL6NJ_T0014145.1 MGP_C57BL6NJ_G0012190.1 mouse_genomes_project 2 159502804 159504067 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053140.1 MGP_C57BL6NJ_G0025782.1 mouse_genomes_project 2 13395660 14179236 + MGP_C57BL6NJ_P0053140 Malrd1 protein_coding protein_coding MGP_C57BL6NJ_T0053524.1 MGP_C57BL6NJ_G0025854.1 mouse_genomes_project 2 23892511 23893777 + MGP_C57BL6NJ_P0053524 Lrrc26 protein_coding protein_coding MGP_C57BL6NJ_T0101488.1 MGP_C57BL6NJ_G0039534.1 mouse_genomes_project 2 54673722 54673831 - Gm23315 snoRNA snoRNA MGP_C57BL6NJ_T0103021.1 MGP_C57BL6NJ_G0040815.1 mouse_genomes_project 2 90228623 90229616 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014006.1 MGP_C57BL6NJ_G0012051.1 mouse_genomes_project 2 102982637 102984334 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100201.1 MGP_C57BL6NJ_G0038247.1 mouse_genomes_project 2 88037073 88037174 + Gm27942 snRNA snRNA MGP_C57BL6NJ_T0007454.1 MGP_C57BL6NJ_G0006111.1 mouse_genomes_project 2 111164261 111165118 + 4930527A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0010637.1 MGP_C57BL6NJ_G0008722.1 mouse_genomes_project 2 32823682 32823735 - Gm25998 miRNA miRNA MGP_C57BL6NJ_T0054011.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27527097 27543643 - MGP_C57BL6NJ_P0054011 Gtf3c5 protein_coding protein_coding MGP_C57BL6NJ_T0054012.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27527098 27543553 - MGP_C57BL6NJ_P0054012 Gtf3c5 protein_coding protein_coding MGP_C57BL6NJ_T0054013.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27532787 27534463 - Gtf3c5 protein_coding retained_intron MGP_C57BL6NJ_T0054014.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27539594 27543631 - Gtf3c5 protein_coding retained_intron MGP_C57BL6NJ_T0054015.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27540127 27543352 - MGP_C57BL6NJ_P0054015 Gtf3c5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054016.1 MGP_C57BL6NJ_G0025944.1 mouse_genomes_project 2 27543368 27544115 - Gtf3c5 protein_coding processed_transcript MGP_C57BL6NJ_T0004256.1 MGP_C57BL6NJ_G0003760.1 mouse_genomes_project 2 149558656 149617731 - Macrod2os1 antisense antisense MGP_C57BL6NJ_T0011771.1 MGP_C57BL6NJ_G0009856.1 mouse_genomes_project 2 120610682 120611000 + Gm25103 misc_RNA misc_RNA MGP_C57BL6NJ_T0018193.1 MGP_C57BL6NJ_G0015785.1 mouse_genomes_project 2 7897275 7936736 - Gm13261 processed_transcript processed_transcript MGP_C57BL6NJ_T0057059.1 MGP_C57BL6NJ_G0026663.1 mouse_genomes_project 2 115907331 115917429 + MGP_C57BL6NJ_P0057059 Lin7c protein_coding protein_coding MGP_C57BL6NJ_T0057060.1 MGP_C57BL6NJ_G0026663.1 mouse_genomes_project 2 115907348 115913164 + Lin7c protein_coding retained_intron MGP_C57BL6NJ_T0013800.1 MGP_C57BL6NJ_G0011845.1 mouse_genomes_project 2 28533630 28533921 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010638.1 MGP_C57BL6NJ_G0008723.1 mouse_genomes_project 2 37437084 37437168 - Mir5128 miRNA miRNA MGP_C57BL6NJ_T0059728.1 MGP_C57BL6NJ_G0027316.1 mouse_genomes_project 2 175895728 175909130 - MGP_C57BL6NJ_P0059728 Ocstamp protein_coding protein_coding MGP_C57BL6NJ_T0060101.1 MGP_C57BL6NJ_G0027405.1 mouse_genomes_project 2 191932821 191961627 + MGP_C57BL6NJ_P0060101 Ss18l1 protein_coding protein_coding MGP_C57BL6NJ_T0057834.1 MGP_C57BL6NJ_G0026857.1 mouse_genomes_project 2 133301924 133484800 - MGP_C57BL6NJ_P0057834 Fam227b protein_coding protein_coding MGP_C57BL6NJ_T0057835.1 MGP_C57BL6NJ_G0026857.1 mouse_genomes_project 2 133302069 133484780 - MGP_C57BL6NJ_P0057835 Fam227b protein_coding protein_coding MGP_C57BL6NJ_T0057836.1 MGP_C57BL6NJ_G0026857.1 mouse_genomes_project 2 133302069 133477542 - MGP_C57BL6NJ_P0057836 Fam227b protein_coding protein_coding MGP_C57BL6NJ_T0057837.1 MGP_C57BL6NJ_G0026857.1 mouse_genomes_project 2 133330914 133484800 - Fam227b protein_coding retained_intron MGP_C57BL6NJ_T0058365.1 MGP_C57BL6NJ_G0026977.1 mouse_genomes_project 2 144020088 144027381 + MGP_C57BL6NJ_P0058365 Lamp5 protein_coding protein_coding MGP_C57BL6NJ_T0058366.1 MGP_C57BL6NJ_G0026977.1 mouse_genomes_project 2 144025776 144037697 + MGP_C57BL6NJ_P0058366 Lamp5 protein_coding protein_coding MGP_C57BL6NJ_T0058367.1 MGP_C57BL6NJ_G0026977.1 mouse_genomes_project 2 144026101 144029344 + Lamp5 protein_coding retained_intron MGP_C57BL6NJ_T0058368.1 MGP_C57BL6NJ_G0026977.1 mouse_genomes_project 2 144026101 144027063 + Lamp5 protein_coding processed_transcript MGP_C57BL6NJ_T0058369.1 MGP_C57BL6NJ_G0026977.1 mouse_genomes_project 2 144027280 144037685 + Lamp5 protein_coding processed_transcript MGP_C57BL6NJ_T0014134.1 MGP_C57BL6NJ_G0012179.1 mouse_genomes_project 2 156115449 156115758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010591.1 MGP_C57BL6NJ_G0008676.1 mouse_genomes_project 2 8068442 8068540 + Mir669m-1 miRNA miRNA MGP_C57BL6NJ_T0007415.1 MGP_C57BL6NJ_G0006081.1 mouse_genomes_project 2 78365373 78365954 - Gm13656 lincRNA lincRNA MGP_C57BL6NJ_T0055522.1 MGP_C57BL6NJ_G0026204.1 mouse_genomes_project 2 68508825 68618762 - MGP_C57BL6NJ_P0055522 Scn7a protein_coding protein_coding MGP_C57BL6NJ_T0058933.1 MGP_C57BL6NJ_G0027145.1 mouse_genomes_project 2 164023533 164024034 - MGP_C57BL6NJ_P0058933 4930519P11Rik protein_coding protein_coding MGP_C57BL6NJ_T0056329.1 MGP_C57BL6NJ_G0026492.1 mouse_genomes_project 2 93221852 93222785 - MGP_C57BL6NJ_P0056329 Olfr1209 protein_coding protein_coding MGP_C57BL6NJ_T0101519.1 MGP_C57BL6NJ_G0039565.1 mouse_genomes_project 2 137865732 137865800 + Snord110 snoRNA snoRNA MGP_C57BL6NJ_T0060403.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193910415 193929722 + MGP_C57BL6NJ_P0060403 Pcmtd2 protein_coding protein_coding MGP_C57BL6NJ_T0060404.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193910474 193929707 + MGP_C57BL6NJ_P0060404 Pcmtd2 protein_coding protein_coding MGP_C57BL6NJ_T0060405.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193913394 193919050 + MGP_C57BL6NJ_P0060405 Pcmtd2 protein_coding protein_coding MGP_C57BL6NJ_T0060406.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193915015 193919104 + Pcmtd2 protein_coding retained_intron MGP_C57BL6NJ_T0060407.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193916892 193927599 + MGP_C57BL6NJ_P0060407 Pcmtd2 protein_coding protein_coding MGP_C57BL6NJ_T0060408.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193923218 193927863 + Pcmtd2 protein_coding processed_transcript MGP_C57BL6NJ_T0060409.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193923226 193927738 + Pcmtd2 protein_coding processed_transcript MGP_C57BL6NJ_T0060410.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193923260 193927516 + Pcmtd2 protein_coding processed_transcript MGP_C57BL6NJ_T0060411.1 MGP_C57BL6NJ_G0027458.1 mouse_genomes_project 2 193923823 193927766 + Pcmtd2 protein_coding retained_intron MGP_C57BL6NJ_T0056322.1 MGP_C57BL6NJ_G0026485.1 mouse_genomes_project 2 92985805 92986738 - MGP_C57BL6NJ_P0056322 Olfr1199 protein_coding protein_coding MGP_C57BL6NJ_T0014161.1 MGP_C57BL6NJ_G0012206.1 mouse_genomes_project 2 164987478 164987794 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057665.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128411155 128429806 - MGP_C57BL6NJ_P0057665 Serinc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057671.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128424554 128430750 - MGP_C57BL6NJ_P0057671 Serinc4 protein_coding protein_coding MGP_C57BL6NJ_T0057672.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128424554 128430662 - MGP_C57BL6NJ_P0057672 Serinc4 protein_coding protein_coding MGP_C57BL6NJ_T0057673.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128424566 128429806 - MGP_C57BL6NJ_P0057673 Serinc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057674.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128424624 128429800 - MGP_C57BL6NJ_P0057674 Serinc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057675.1 MGP_C57BL6NJ_G0026814.1 mouse_genomes_project 2 128426122 128427722 - Serinc4 protein_coding retained_intron MGP_C57BL6NJ_T0056420.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95255310 95295781 + MGP_C57BL6NJ_P0056420 protein_coding protein_coding MGP_C57BL6NJ_T0056421.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95255397 95282147 + MGP_C57BL6NJ_P0056421 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056422.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95255544 95289353 + protein_coding processed_transcript MGP_C57BL6NJ_T0056423.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95258230 95268907 + protein_coding processed_transcript MGP_C57BL6NJ_T0056424.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95269056 95276603 + protein_coding processed_transcript MGP_C57BL6NJ_T0056425.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95269859 95280675 + protein_coding processed_transcript MGP_C57BL6NJ_T0056426.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95276290 95280896 + protein_coding processed_transcript MGP_C57BL6NJ_T0056427.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95280924 95289247 + protein_coding processed_transcript MGP_C57BL6NJ_T0056428.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95281481 95289336 + protein_coding processed_transcript MGP_C57BL6NJ_T0056429.1 MGP_C57BL6NJ_G0026552.1 mouse_genomes_project 2 95288420 95289244 + protein_coding processed_transcript MGP_C57BL6NJ_T0053145.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15330569 15743923 - MGP_C57BL6NJ_P0053145 protein_coding protein_coding MGP_C57BL6NJ_T0053146.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15330714 15451160 - MGP_C57BL6NJ_P0053146 protein_coding protein_coding MGP_C57BL6NJ_T0053147.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15335354 15347895 - protein_coding processed_transcript MGP_C57BL6NJ_T0053148.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15335354 15450766 - MGP_C57BL6NJ_P0053148 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053149.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15337415 15532438 - MGP_C57BL6NJ_P0053149 protein_coding protein_coding MGP_C57BL6NJ_T0053150.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15364945 15383169 - protein_coding processed_transcript MGP_C57BL6NJ_T0053151.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15366563 15383212 - protein_coding processed_transcript MGP_C57BL6NJ_T0053152.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15366820 15383238 - MGP_C57BL6NJ_P0053152 protein_coding protein_coding MGP_C57BL6NJ_T0053153.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15369540 15383199 - protein_coding processed_transcript MGP_C57BL6NJ_T0053154.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15385060 15453015 - MGP_C57BL6NJ_P0053154 protein_coding protein_coding MGP_C57BL6NJ_T0053155.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15385135 15453017 - MGP_C57BL6NJ_P0053155 protein_coding protein_coding MGP_C57BL6NJ_T0053156.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15391235 15450849 - MGP_C57BL6NJ_P0053156 protein_coding protein_coding MGP_C57BL6NJ_T0053157.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15421054 15530782 - protein_coding processed_transcript MGP_C57BL6NJ_T0053158.1 MGP_C57BL6NJ_G0025784.1 mouse_genomes_project 2 15740264 15744344 - protein_coding processed_transcript MGP_C57BL6NJ_T0001174.1 MGP_C57BL6NJ_G0001080.1 mouse_genomes_project 2 11009185 11010874 - TEC TEC MGP_C57BL6NJ_T0102218.1 MGP_C57BL6NJ_G0040221.1 mouse_genomes_project 2 53628333 53628718 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0013872.1 MGP_C57BL6NJ_G0011917.1 mouse_genomes_project 2 57216048 57216281 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056780.1 MGP_C57BL6NJ_G0026606.1 mouse_genomes_project 2 99087270 99212315 - MGP_C57BL6NJ_P0056780 Ttc17 protein_coding protein_coding MGP_C57BL6NJ_T0056781.1 MGP_C57BL6NJ_G0026606.1 mouse_genomes_project 2 99087272 99212301 - MGP_C57BL6NJ_P0056781 Ttc17 protein_coding protein_coding MGP_C57BL6NJ_T0056782.1 MGP_C57BL6NJ_G0026606.1 mouse_genomes_project 2 99114655 99212310 - MGP_C57BL6NJ_P0056782 Ttc17 protein_coding protein_coding MGP_C57BL6NJ_T0056783.1 MGP_C57BL6NJ_G0026606.1 mouse_genomes_project 2 99141177 99148888 - Ttc17 protein_coding processed_transcript MGP_C57BL6NJ_T0056784.1 MGP_C57BL6NJ_G0026606.1 mouse_genomes_project 2 99168403 99210613 - Ttc17 protein_coding processed_transcript MGP_C57BL6NJ_T0053597.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24089996 24095808 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053598.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24089996 24095056 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053605.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094305 24095173 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053606.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094337 24095950 - MGP_C57BL6NJ_P0053606 BC029214 protein_coding protein_coding MGP_C57BL6NJ_T0053607.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094339 24095928 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053608.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094340 24095135 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053609.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094340 24095520 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053610.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094386 24095864 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053611.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094416 24095821 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053612.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094670 24095887 - MGP_C57BL6NJ_P0053612 BC029214 protein_coding protein_coding MGP_C57BL6NJ_T0053613.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094867 24095879 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053614.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24094883 24095783 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0053615.1 MGP_C57BL6NJ_G0025864.1 mouse_genomes_project 2 24095114 24095804 - BC029214 protein_coding processed_transcript MGP_C57BL6NJ_T0014162.1 MGP_C57BL6NJ_G0012207.1 mouse_genomes_project 2 165015465 165015788 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007488.1 MGP_C57BL6NJ_G0006138.1 mouse_genomes_project 2 131441151 131446712 - 4930583P06Rik lincRNA lincRNA MGP_C57BL6NJ_T0058337.1 MGP_C57BL6NJ_G0026973.1 mouse_genomes_project 2 142375169 142433180 - MGP_C57BL6NJ_P0058337 Hao1 protein_coding protein_coding MGP_C57BL6NJ_T0058338.1 MGP_C57BL6NJ_G0026973.1 mouse_genomes_project 2 142407110 142433119 - Hao1 protein_coding processed_transcript MGP_C57BL6NJ_T0057841.1 MGP_C57BL6NJ_G0026859.1 mouse_genomes_project 2 133484936 133498084 + MGP_C57BL6NJ_P0057841 Dtwd1 protein_coding protein_coding MGP_C57BL6NJ_T0057842.1 MGP_C57BL6NJ_G0026859.1 mouse_genomes_project 2 133487336 133498087 + MGP_C57BL6NJ_P0057842 Dtwd1 protein_coding protein_coding MGP_C57BL6NJ_T0056381.1 MGP_C57BL6NJ_G0026531.1 mouse_genomes_project 2 94177058 94184292 - MGP_C57BL6NJ_P0056381 Olfr1256 protein_coding protein_coding MGP_C57BL6NJ_T0056382.1 MGP_C57BL6NJ_G0026531.1 mouse_genomes_project 2 94177058 94177979 - MGP_C57BL6NJ_P0056382 Olfr1256 protein_coding protein_coding MGP_C57BL6NJ_T0004084.1 MGP_C57BL6NJ_G0003637.1 mouse_genomes_project 2 26015912 26062612 + Sardhos antisense antisense MGP_C57BL6NJ_T0056185.1 MGP_C57BL6NJ_G0026364.1 mouse_genomes_project 2 89439513 89440452 + MGP_C57BL6NJ_P0056185 Olfr1025-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0056186.1 MGP_C57BL6NJ_G0026364.1 mouse_genomes_project 2 89439513 89440434 + MGP_C57BL6NJ_P0056186 Olfr1025-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0101486.1 MGP_C57BL6NJ_G0039532.1 mouse_genomes_project 2 47113562 47113679 - Gm25264 snoRNA snoRNA MGP_C57BL6NJ_T0014184.1 MGP_C57BL6NJ_G0012229.1 mouse_genomes_project 2 173124404 173125024 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059473.1 MGP_C57BL6NJ_G0027242.1 mouse_genomes_project 2 173458531 173592204 + MGP_C57BL6NJ_P0059473 Tox2 protein_coding protein_coding MGP_C57BL6NJ_T0059474.1 MGP_C57BL6NJ_G0027242.1 mouse_genomes_project 2 173459959 173537706 + MGP_C57BL6NJ_P0059474 Tox2 protein_coding protein_coding MGP_C57BL6NJ_T0059475.1 MGP_C57BL6NJ_G0027242.1 mouse_genomes_project 2 173482797 173591336 + MGP_C57BL6NJ_P0059475 Tox2 protein_coding protein_coding MGP_C57BL6NJ_T0059476.1 MGP_C57BL6NJ_G0027242.1 mouse_genomes_project 2 173482888 173591136 + MGP_C57BL6NJ_P0059476 Tox2 protein_coding protein_coding MGP_C57BL6NJ_T0059477.1 MGP_C57BL6NJ_G0027242.1 mouse_genomes_project 2 173588411 173591136 + MGP_C57BL6NJ_P0059477 Tox2 protein_coding protein_coding MGP_C57BL6NJ_T0057639.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128320493 128322820 + MGP_C57BL6NJ_P0057639 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057640.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128320555 128326510 + MGP_C57BL6NJ_P0057640 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057641.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128320619 128322557 + MGP_C57BL6NJ_P0057641 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057642.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128320686 128323761 + MGP_C57BL6NJ_P0057642 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057643.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128321389 128326510 + MGP_C57BL6NJ_P0057643 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057644.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128321435 128323758 + MGP_C57BL6NJ_P0057644 Ckmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057645.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128321438 128323141 + Ckmt1 protein_coding retained_intron MGP_C57BL6NJ_T0057646.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128321445 128323400 + MGP_C57BL6NJ_P0057646 Ckmt1 protein_coding protein_coding MGP_C57BL6NJ_T0057647.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128321623 128322799 + MGP_C57BL6NJ_P0057647 Ckmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057648.1 MGP_C57BL6NJ_G0026809.1 mouse_genomes_project 2 128325690 128326509 + Ckmt1 protein_coding retained_intron MGP_C57BL6NJ_T0001216.1 MGP_C57BL6NJ_G0001122.1 mouse_genomes_project 2 71024882 71025748 + TEC TEC MGP_C57BL6NJ_T0056331.1 MGP_C57BL6NJ_G0026494.1 mouse_genomes_project 2 93274821 93275757 + MGP_C57BL6NJ_P0056331 Olfr1212 protein_coding protein_coding MGP_C57BL6NJ_T0013918.1 MGP_C57BL6NJ_G0011963.1 mouse_genomes_project 2 74725014 74725310 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101533.1 MGP_C57BL6NJ_G0039579.1 mouse_genomes_project 2 160336463 160336599 + Gm24077 snoRNA snoRNA MGP_C57BL6NJ_T0103059.1 MGP_C57BL6NJ_G0040853.1 mouse_genomes_project 2 162979383 163034677 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007349.1 MGP_C57BL6NJ_G0006026.1 mouse_genomes_project 2 33502392 33504471 + Gm13404 lincRNA lincRNA MGP_C57BL6NJ_T0100190.1 MGP_C57BL6NJ_G0038236.1 mouse_genomes_project 2 48991776 48991896 - Gm25338 snRNA snRNA MGP_C57BL6NJ_T0054359.1 MGP_C57BL6NJ_G0025997.1 mouse_genomes_project 2 30202549 30209856 - MGP_C57BL6NJ_P0054359 Tor1a protein_coding protein_coding MGP_C57BL6NJ_T0054360.1 MGP_C57BL6NJ_G0025997.1 mouse_genomes_project 2 30202602 30209795 - Tor1a protein_coding retained_intron MGP_C57BL6NJ_T0054361.1 MGP_C57BL6NJ_G0025997.1 mouse_genomes_project 2 30202934 30205771 - Tor1a protein_coding retained_intron MGP_C57BL6NJ_T0054362.1 MGP_C57BL6NJ_G0025997.1 mouse_genomes_project 2 30202975 30205798 - Tor1a protein_coding retained_intron MGP_C57BL6NJ_T0054363.1 MGP_C57BL6NJ_G0025997.1 mouse_genomes_project 2 30208833 30209811 - Tor1a protein_coding retained_intron MGP_C57BL6NJ_T0056254.1 MGP_C57BL6NJ_G0026429.1 mouse_genomes_project 2 91469181 91472513 - MGP_C57BL6NJ_P0056254 Pramel7 protein_coding protein_coding MGP_C57BL6NJ_T0056255.1 MGP_C57BL6NJ_G0026429.1 mouse_genomes_project 2 91470978 91479341 - Pramel7 protein_coding processed_transcript MGP_C57BL6NJ_T0056256.1 MGP_C57BL6NJ_G0026429.1 mouse_genomes_project 2 91471214 91479350 - Pramel7 protein_coding processed_transcript MGP_C57BL6NJ_T0057168.1 MGP_C57BL6NJ_G0026720.1 mouse_genomes_project 2 120165707 120180824 - MGP_C57BL6NJ_P0057168 Arhgap11a protein_coding protein_coding MGP_C57BL6NJ_T0057169.1 MGP_C57BL6NJ_G0026720.1 mouse_genomes_project 2 120165995 120181032 - MGP_C57BL6NJ_P0057169 Arhgap11a protein_coding protein_coding MGP_C57BL6NJ_T0010557.1 MGP_C57BL6NJ_G0008642.1 mouse_genomes_project 2 8032635 8032756 + Gm22072 miRNA miRNA MGP_C57BL6NJ_T0013999.1 MGP_C57BL6NJ_G0012044.1 mouse_genomes_project 2 99406689 99407290 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057874.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134159297 134247115 - MGP_C57BL6NJ_P0057874 Trpm7 protein_coding protein_coding MGP_C57BL6NJ_T0057875.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134159303 134247002 - MGP_C57BL6NJ_P0057875 Trpm7 protein_coding protein_coding MGP_C57BL6NJ_T0057876.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134159316 134163269 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057877.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134160559 134170358 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057878.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134160630 134165579 - MGP_C57BL6NJ_P0057878 Trpm7 protein_coding protein_coding MGP_C57BL6NJ_T0057879.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134164726 134165562 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057880.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134165015 134172792 - Trpm7 protein_coding processed_transcript MGP_C57BL6NJ_T0057881.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134180731 134185364 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057882.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134196922 134201510 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057883.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134198495 134247071 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0057884.1 MGP_C57BL6NJ_G0026866.1 mouse_genomes_project 2 134198498 134201849 - Trpm7 protein_coding retained_intron MGP_C57BL6NJ_T0056316.1 MGP_C57BL6NJ_G0026479.1 mouse_genomes_project 2 92740179 92741118 + MGP_C57BL6NJ_P0056316 Olfr1188 protein_coding protein_coding MGP_C57BL6NJ_T0055175.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50989600 51007297 - Mmadhc protein_coding processed_transcript MGP_C57BL6NJ_T0055176.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50989600 51007319 - MGP_C57BL6NJ_P0055176 Mmadhc protein_coding protein_coding MGP_C57BL6NJ_T0055177.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50990069 51007289 - Mmadhc protein_coding processed_transcript MGP_C57BL6NJ_T0055178.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50990860 51007283 - MGP_C57BL6NJ_P0055178 Mmadhc protein_coding protein_coding MGP_C57BL6NJ_T0055179.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50990873 51007025 - Mmadhc protein_coding processed_transcript MGP_C57BL6NJ_T0055180.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50990885 50998718 - Mmadhc protein_coding processed_transcript MGP_C57BL6NJ_T0055181.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50997371 51007278 - Mmadhc protein_coding processed_transcript MGP_C57BL6NJ_T0055182.1 MGP_C57BL6NJ_G0026143.1 mouse_genomes_project 2 50997384 51007403 - MGP_C57BL6NJ_P0055182 Mmadhc protein_coding protein_coding MGP_C57BL6NJ_T0007524.1 MGP_C57BL6NJ_G0006168.1 mouse_genomes_project 2 158141922 158146789 + Gm14135 lincRNA lincRNA MGP_C57BL6NJ_T0056726.1 MGP_C57BL6NJ_G0026597.1 mouse_genomes_project 2 98308539 98312333 + MGP_C57BL6NJ_P0056726 Gm10803 protein_coding protein_coding MGP_C57BL6NJ_T0056793.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106931982 107004872 - MGP_C57BL6NJ_P0056793 B230118H07Rik protein_coding protein_coding MGP_C57BL6NJ_T0056794.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106931991 106946660 - MGP_C57BL6NJ_P0056794 B230118H07Rik protein_coding protein_coding MGP_C57BL6NJ_T0056795.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106932092 107004829 - MGP_C57BL6NJ_P0056795 B230118H07Rik protein_coding protein_coding MGP_C57BL6NJ_T0056796.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106932096 106955445 - B230118H07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056797.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106946569 107004191 - MGP_C57BL6NJ_P0056797 B230118H07Rik protein_coding protein_coding MGP_C57BL6NJ_T0056798.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106985288 107004896 - B230118H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0056799.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106985814 106996988 - B230118H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0056800.1 MGP_C57BL6NJ_G0026609.1 mouse_genomes_project 2 106986324 107025419 - B230118H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0056342.1 MGP_C57BL6NJ_G0026503.1 mouse_genomes_project 2 93452968 93453904 - MGP_C57BL6NJ_P0056342 Olfr1222 protein_coding protein_coding MGP_C57BL6NJ_T0056343.1 MGP_C57BL6NJ_G0026503.1 mouse_genomes_project 2 93453253 93453906 - MGP_C57BL6NJ_P0056343 Olfr1222 protein_coding protein_coding MGP_C57BL6NJ_T0054115.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28897566 28924229 + Urm1 protein_coding processed_transcript MGP_C57BL6NJ_T0054116.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28908535 28924458 + Urm1 protein_coding processed_transcript MGP_C57BL6NJ_T0054117.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28908535 28926086 + MGP_C57BL6NJ_P0054117 Urm1 protein_coding protein_coding MGP_C57BL6NJ_T0054118.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28908554 28924505 + Urm1 protein_coding processed_transcript MGP_C57BL6NJ_T0054119.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28908588 28914830 + Urm1 protein_coding retained_intron MGP_C57BL6NJ_T0054120.1 MGP_C57BL6NJ_G0025963.1 mouse_genomes_project 2 28922731 28925148 + Urm1 protein_coding retained_intron MGP_C57BL6NJ_T0007489.1 MGP_C57BL6NJ_G0006139.1 mouse_genomes_project 2 131957886 131960315 + Gm13994 lincRNA lincRNA MGP_C57BL6NJ_T0013762.1 MGP_C57BL6NJ_G0011807.1 mouse_genomes_project 2 15150184 15150990 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059038.1 MGP_C57BL6NJ_G0027165.1 mouse_genomes_project 2 165281342 165281399 - MGP_C57BL6NJ_P0059038 Gm17581 protein_coding protein_coding MGP_C57BL6NJ_T0007358.1 MGP_C57BL6NJ_G0006032.1 mouse_genomes_project 2 36802228 36803105 - Gm13434 lincRNA lincRNA MGP_C57BL6NJ_T0054826.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34573161 34654217 - MGP_C57BL6NJ_P0054826 protein_coding protein_coding MGP_C57BL6NJ_T0054827.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34573508 34694662 - MGP_C57BL6NJ_P0054827 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0054828.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34573533 34612155 - MGP_C57BL6NJ_P0054828 protein_coding protein_coding MGP_C57BL6NJ_T0054829.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34582314 34585895 - protein_coding processed_transcript MGP_C57BL6NJ_T0054830.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34582408 34593369 - protein_coding retained_intron MGP_C57BL6NJ_T0054831.1 MGP_C57BL6NJ_G0026065.1 mouse_genomes_project 2 34587521 34598844 - protein_coding processed_transcript MGP_C57BL6NJ_T0013830.1 MGP_C57BL6NJ_G0011875.1 mouse_genomes_project 2 39154293 39155058 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055197.1 MGP_C57BL6NJ_G0026148.1 mouse_genomes_project 2 52856975 52878769 + MGP_C57BL6NJ_P0055197 Tnfaip6 protein_coding protein_coding MGP_C57BL6NJ_T0057409.1 MGP_C57BL6NJ_G0026776.1 mouse_genomes_project 2 126831459 126893710 + MGP_C57BL6NJ_P0057409 Mapkbp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057410.1 MGP_C57BL6NJ_G0026776.1 mouse_genomes_project 2 126831517 126893716 + MGP_C57BL6NJ_P0057410 Mapkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0057411.1 MGP_C57BL6NJ_G0026776.1 mouse_genomes_project 2 126877145 126878553 + Mapkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0057412.1 MGP_C57BL6NJ_G0026776.1 mouse_genomes_project 2 126878501 126881064 + Mapkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0057413.1 MGP_C57BL6NJ_G0026776.1 mouse_genomes_project 2 126888374 126889348 + Mapkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0059593.1 MGP_C57BL6NJ_G0027283.1 mouse_genomes_project 2 175003601 175022467 - MGP_C57BL6NJ_P0059593 Wfdc8 protein_coding protein_coding MGP_C57BL6NJ_T0059594.1 MGP_C57BL6NJ_G0027283.1 mouse_genomes_project 2 175003609 175022227 - MGP_C57BL6NJ_P0059594 Wfdc8 protein_coding protein_coding MGP_C57BL6NJ_T0059595.1 MGP_C57BL6NJ_G0027283.1 mouse_genomes_project 2 175004356 175022467 - MGP_C57BL6NJ_P0059595 Wfdc8 protein_coding protein_coding MGP_C57BL6NJ_T0014055.1 MGP_C57BL6NJ_G0012100.1 mouse_genomes_project 2 118642184 118642485 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056189.1 MGP_C57BL6NJ_G0026367.1 mouse_genomes_project 2 89503580 89506265 + MGP_C57BL6NJ_P0056189 Olfr1028 protein_coding protein_coding MGP_C57BL6NJ_T0007583.1 MGP_C57BL6NJ_G0006218.1 mouse_genomes_project 2 180438732 180445176 + Gm14250 lincRNA lincRNA MGP_C57BL6NJ_T0056563.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 95854755 96036063 - MGP_C57BL6NJ_P0056563 1110051M20Rik protein_coding protein_coding MGP_C57BL6NJ_T0056564.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 95859804 96036055 - MGP_C57BL6NJ_P0056564 1110051M20Rik protein_coding protein_coding MGP_C57BL6NJ_T0056565.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 95863306 95864706 - 1110051M20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056566.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 95890777 96036084 - 1110051M20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056567.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 95973175 96036110 - 1110051M20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056568.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 96010317 96036078 - 1110051M20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056569.1 MGP_C57BL6NJ_G0026570.1 mouse_genomes_project 2 96010366 96036145 - 1110051M20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0010688.1 MGP_C57BL6NJ_G0008773.1 mouse_genomes_project 2 135306447 135306573 + Gm22411 miRNA miRNA MGP_C57BL6NJ_T0011767.1 MGP_C57BL6NJ_G0009852.1 mouse_genomes_project 2 110802931 110803191 - Gm27715 misc_RNA misc_RNA MGP_C57BL6NJ_T0057116.1 MGP_C57BL6NJ_G0026699.1 mouse_genomes_project 2 118229976 118230915 - MGP_C57BL6NJ_P0057116 protein_coding protein_coding MGP_C57BL6NJ_T0100207.1 MGP_C57BL6NJ_G0038253.1 mouse_genomes_project 2 123517784 123517919 - Gm25514 snRNA snRNA MGP_C57BL6NJ_T0014039.1 MGP_C57BL6NJ_G0012084.1 mouse_genomes_project 2 114351757 114352385 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101528.1 MGP_C57BL6NJ_G0039574.1 mouse_genomes_project 2 157423802 157423914 + Gm25866 snoRNA snoRNA MGP_C57BL6NJ_T0056239.1 MGP_C57BL6NJ_G0026414.1 mouse_genomes_project 2 90995958 90996897 - MGP_C57BL6NJ_P0056239 Olfr1109 protein_coding protein_coding MGP_C57BL6NJ_T0010660.1 MGP_C57BL6NJ_G0008745.1 mouse_genomes_project 2 95997556 95997639 - Gm22071 miRNA miRNA MGP_C57BL6NJ_T0013838.1 MGP_C57BL6NJ_G0011883.1 mouse_genomes_project 2 40981574 40982535 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053296.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277198 21378051 - MGP_C57BL6NJ_P0053296 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053297.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277198 21378005 - MGP_C57BL6NJ_P0053297 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053298.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277211 21378051 - MGP_C57BL6NJ_P0053298 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053299.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277433 21377932 - MGP_C57BL6NJ_P0053299 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053300.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277489 21377997 - MGP_C57BL6NJ_P0053300 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053301.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277489 21377947 - MGP_C57BL6NJ_P0053301 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053302.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277489 21377914 - MGP_C57BL6NJ_P0053302 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053303.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277494 21377995 - MGP_C57BL6NJ_P0053303 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053304.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21277494 21378040 - MGP_C57BL6NJ_P0053304 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053305.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21278017 21377950 - MGP_C57BL6NJ_P0053305 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053306.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21278358 21378029 - MGP_C57BL6NJ_P0053306 Abi1 protein_coding protein_coding MGP_C57BL6NJ_T0053307.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21278933 21284370 - Abi1 protein_coding retained_intron MGP_C57BL6NJ_T0053308.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21278937 21287418 - Abi1 protein_coding retained_intron MGP_C57BL6NJ_T0053309.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21283842 21297967 - Abi1 protein_coding retained_intron MGP_C57BL6NJ_T0053310.1 MGP_C57BL6NJ_G0025811.1 mouse_genomes_project 2 21287341 21299726 - Abi1 protein_coding retained_intron MGP_C57BL6NJ_T0018349.1 MGP_C57BL6NJ_G0015872.1 mouse_genomes_project 2 161459320 161496337 + Gm14164 processed_transcript processed_transcript MGP_C57BL6NJ_T0018350.1 MGP_C57BL6NJ_G0015872.1 mouse_genomes_project 2 161495760 161496162 + Gm14164 processed_transcript processed_transcript MGP_C57BL6NJ_T0057101.1 MGP_C57BL6NJ_G0026684.1 mouse_genomes_project 2 117542240 117544933 - MGP_C57BL6NJ_P0057101 Olfr1286 protein_coding protein_coding MGP_C57BL6NJ_T0103018.1 MGP_C57BL6NJ_G0040812.1 mouse_genomes_project 2 89849948 89850899 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058611.1 MGP_C57BL6NJ_G0027043.1 mouse_genomes_project 2 157861224 157863004 - MGP_C57BL6NJ_P0058611 Gm10750 protein_coding protein_coding MGP_C57BL6NJ_T0054174.1 MGP_C57BL6NJ_G0025968.1 mouse_genomes_project 2 29131495 29151697 - MGP_C57BL6NJ_P0054174 Wdr34 protein_coding protein_coding MGP_C57BL6NJ_T0054175.1 MGP_C57BL6NJ_G0025968.1 mouse_genomes_project 2 29131861 29132455 - Wdr34 protein_coding retained_intron MGP_C57BL6NJ_T0054176.1 MGP_C57BL6NJ_G0025968.1 mouse_genomes_project 2 29133743 29134996 - Wdr34 protein_coding retained_intron MGP_C57BL6NJ_T0054177.1 MGP_C57BL6NJ_G0025968.1 mouse_genomes_project 2 29149997 29151677 - Wdr34 protein_coding processed_transcript MGP_C57BL6NJ_T0054669.1 MGP_C57BL6NJ_G0026042.1 mouse_genomes_project 2 32208912 32217612 - MGP_C57BL6NJ_P0054669 Cfap157 protein_coding protein_coding MGP_C57BL6NJ_T0054670.1 MGP_C57BL6NJ_G0026042.1 mouse_genomes_project 2 32209746 32212330 - Cfap157 protein_coding retained_intron MGP_C57BL6NJ_T0056626.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545007 96579084 - MGP_C57BL6NJ_P0056626 Dgkz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056627.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545007 96591419 - MGP_C57BL6NJ_P0056627 Dgkz protein_coding protein_coding MGP_C57BL6NJ_T0056628.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545009 96577154 - MGP_C57BL6NJ_P0056628 Dgkz protein_coding protein_coding MGP_C57BL6NJ_T0056629.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545010 96579097 - MGP_C57BL6NJ_P0056629 Dgkz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056630.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545010 96562611 - MGP_C57BL6NJ_P0056630 Dgkz protein_coding protein_coding MGP_C57BL6NJ_T0056631.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545419 96546116 - Dgkz protein_coding retained_intron MGP_C57BL6NJ_T0056632.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545567 96546765 - Dgkz protein_coding retained_intron MGP_C57BL6NJ_T0056633.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545625 96547683 - Dgkz protein_coding retained_intron MGP_C57BL6NJ_T0056634.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545638 96546695 - Dgkz protein_coding retained_intron MGP_C57BL6NJ_T0056635.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96545964 96547784 - Dgkz protein_coding retained_intron MGP_C57BL6NJ_T0056636.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96548090 96550212 - Dgkz protein_coding processed_transcript MGP_C57BL6NJ_T0056637.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96552941 96562495 - MGP_C57BL6NJ_P0056637 Dgkz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056638.1 MGP_C57BL6NJ_G0026581.1 mouse_genomes_project 2 96553192 96557441 - Dgkz protein_coding processed_transcript MGP_C57BL6NJ_T0057109.1 MGP_C57BL6NJ_G0026692.1 mouse_genomes_project 2 117955231 117956170 + MGP_C57BL6NJ_P0057109 Olfr1301 protein_coding protein_coding MGP_C57BL6NJ_T0013835.1 MGP_C57BL6NJ_G0011880.1 mouse_genomes_project 2 40123375 40123809 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058473.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152912347 152918079 + Csrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0058475.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152912415 152954918 + MGP_C57BL6NJ_P0058475 Csrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0058476.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152918488 152940734 + MGP_C57BL6NJ_P0058476 Csrp2bp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058477.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152920072 152934585 + Csrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0058478.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152920537 152948097 + Csrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0058479.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152934302 152940799 + Csrp2bp protein_coding retained_intron MGP_C57BL6NJ_T0058480.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152934316 152940780 + Csrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0058481.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152949670 152954940 + Csrp2bp protein_coding retained_intron MGP_C57BL6NJ_T0058482.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152949870 152951677 + MGP_C57BL6NJ_P0058482 Csrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0058483.1 MGP_C57BL6NJ_G0027005.1 mouse_genomes_project 2 152951401 152954941 + MGP_C57BL6NJ_P0058483 Csrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0059551.1 MGP_C57BL6NJ_G0027270.1 mouse_genomes_project 2 174673180 174675900 + MGP_C57BL6NJ_P0059551 Svs5 protein_coding protein_coding MGP_C57BL6NJ_T0059552.1 MGP_C57BL6NJ_G0027270.1 mouse_genomes_project 2 174674953 174675900 + MGP_C57BL6NJ_P0059552 Svs5 protein_coding protein_coding MGP_C57BL6NJ_T0056264.1 MGP_C57BL6NJ_G0026432.1 mouse_genomes_project 2 91575666 91576611 + MGP_C57BL6NJ_P0056264 Olfr1129 protein_coding protein_coding MGP_C57BL6NJ_T0056134.1 MGP_C57BL6NJ_G0026335.1 mouse_genomes_project 2 88348767 88355763 + Prg3 protein_coding processed_transcript MGP_C57BL6NJ_T0056135.1 MGP_C57BL6NJ_G0026335.1 mouse_genomes_project 2 88348767 88355862 + MGP_C57BL6NJ_P0056135 Prg3 protein_coding protein_coding MGP_C57BL6NJ_T0053081.1 MGP_C57BL6NJ_G0025770.1 mouse_genomes_project 2 11047308 11291415 - MGP_C57BL6NJ_P0053081 Cubn protein_coding protein_coding MGP_C57BL6NJ_T0053082.1 MGP_C57BL6NJ_G0025770.1 mouse_genomes_project 2 11048759 11291415 - MGP_C57BL6NJ_P0053082 Cubn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053083.1 MGP_C57BL6NJ_G0025770.1 mouse_genomes_project 2 11200326 11252561 - Cubn protein_coding retained_intron MGP_C57BL6NJ_T0053084.1 MGP_C57BL6NJ_G0025770.1 mouse_genomes_project 2 11253573 11256414 - Cubn protein_coding retained_intron MGP_C57BL6NJ_T0010569.1 MGP_C57BL6NJ_G0008654.1 mouse_genomes_project 2 8042575 8042669 + Mir466f-3 miRNA miRNA MGP_C57BL6NJ_T0057115.1 MGP_C57BL6NJ_G0026698.1 mouse_genomes_project 2 118203011 118203974 - MGP_C57BL6NJ_P0057115 Olfr1309 protein_coding protein_coding MGP_C57BL6NJ_T0013734.1 MGP_C57BL6NJ_G0011779.1 mouse_genomes_project 2 2283203 2284029 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014172.1 MGP_C57BL6NJ_G0012217.1 mouse_genomes_project 2 166565279 166565516 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004321.1 MGP_C57BL6NJ_G0003811.1 mouse_genomes_project 2 178869420 178870398 + Gm14236 antisense antisense MGP_C57BL6NJ_T0007391.1 MGP_C57BL6NJ_G0006062.1 mouse_genomes_project 2 74062654 74070235 + Gm13647 lincRNA lincRNA MGP_C57BL6NJ_T0055847.1 MGP_C57BL6NJ_G0026273.1 mouse_genomes_project 2 77318432 77320646 + MGP_C57BL6NJ_P0055847 Hoxd1 protein_coding protein_coding MGP_C57BL6NJ_T0013871.1 MGP_C57BL6NJ_G0011916.1 mouse_genomes_project 2 57130773 57133075 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057014.1 MGP_C57BL6NJ_G0026652.1 mouse_genomes_project 2 111410858 111602091 - MGP_C57BL6NJ_P0057014 Elp4 protein_coding protein_coding MGP_C57BL6NJ_T0057015.1 MGP_C57BL6NJ_G0026652.1 mouse_genomes_project 2 111442658 111567264 - MGP_C57BL6NJ_P0057015 Elp4 protein_coding protein_coding MGP_C57BL6NJ_T0057016.1 MGP_C57BL6NJ_G0026652.1 mouse_genomes_project 2 111508074 111530355 - Elp4 protein_coding retained_intron MGP_C57BL6NJ_T0057017.1 MGP_C57BL6NJ_G0026652.1 mouse_genomes_project 2 111567351 111602010 - Elp4 protein_coding processed_transcript MGP_C57BL6NJ_T0056251.1 MGP_C57BL6NJ_G0026426.1 mouse_genomes_project 2 91392873 91393845 + MGP_C57BL6NJ_P0056251 Olfr1123 protein_coding protein_coding MGP_C57BL6NJ_T0014005.1 MGP_C57BL6NJ_G0012050.1 mouse_genomes_project 2 101981593 101982994 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100235.1 MGP_C57BL6NJ_G0038281.1 mouse_genomes_project 2 193452121 193452224 - Gm22708 snRNA snRNA MGP_C57BL6NJ_T0013724.1 MGP_C57BL6NJ_G0011769.1 mouse_genomes_project 2 21640 22156 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004192.1 MGP_C57BL6NJ_G0003717.1 mouse_genomes_project 2 109847434 109851295 + Gm13883 antisense antisense MGP_C57BL6NJ_T0004193.1 MGP_C57BL6NJ_G0003717.1 mouse_genomes_project 2 109847434 109867841 + Gm13883 antisense antisense MGP_C57BL6NJ_T0057113.1 MGP_C57BL6NJ_G0026696.1 mouse_genomes_project 2 118131361 118134112 - MGP_C57BL6NJ_P0057113 Olfr1306 protein_coding protein_coding MGP_C57BL6NJ_T0010695.1 MGP_C57BL6NJ_G0008780.1 mouse_genomes_project 2 146954058 146954137 + Mir1952 miRNA miRNA MGP_C57BL6NJ_T0054231.1 MGP_C57BL6NJ_G0025979.1 mouse_genomes_project 2 29393905 29436377 + MGP_C57BL6NJ_P0054231 Gm28035 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102215.1 MGP_C57BL6NJ_G0040219.1 mouse_genomes_project 2 23018809 23019395 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0100203.1 MGP_C57BL6NJ_G0038249.1 mouse_genomes_project 2 95775976 95776082 + Gm23390 snRNA snRNA MGP_C57BL6NJ_T0057804.1 MGP_C57BL6NJ_G0026848.1 mouse_genomes_project 2 132528578 132541243 + MGP_C57BL6NJ_P0057804 Dut protein_coding protein_coding MGP_C57BL6NJ_T0057805.1 MGP_C57BL6NJ_G0026848.1 mouse_genomes_project 2 132528870 132542103 + MGP_C57BL6NJ_P0057805 Dut protein_coding protein_coding MGP_C57BL6NJ_T0057806.1 MGP_C57BL6NJ_G0026848.1 mouse_genomes_project 2 132529288 132530417 + Dut protein_coding processed_transcript MGP_C57BL6NJ_T0014120.1 MGP_C57BL6NJ_G0012165.1 mouse_genomes_project 2 152357485 152357913 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014085.1 MGP_C57BL6NJ_G0012130.1 mouse_genomes_project 2 136460061 136460540 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053954.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26289166 26318968 - MGP_C57BL6NJ_P0053954 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053955.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26289166 26319256 - MGP_C57BL6NJ_P0053955 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053956.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26289187 26319243 - MGP_C57BL6NJ_P0053956 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053957.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26291430 26307686 - MGP_C57BL6NJ_P0053957 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053958.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26292842 26367887 - MGP_C57BL6NJ_P0053958 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053959.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26292842 26319224 - MGP_C57BL6NJ_P0053959 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053960.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26296565 26319223 - Brd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053961.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26307100 26319177 - MGP_C57BL6NJ_P0053961 Brd3 protein_coding protein_coding MGP_C57BL6NJ_T0053962.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26307461 26308152 - Brd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053963.1 MGP_C57BL6NJ_G0025931.1 mouse_genomes_project 2 26307568 26318751 - Brd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053861.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25691645 25695593 - Surf6 protein_coding processed_transcript MGP_C57BL6NJ_T0053862.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25691942 25695155 - Surf6 protein_coding processed_transcript MGP_C57BL6NJ_T0053863.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25692006 25704181 - Surf6 protein_coding processed_transcript MGP_C57BL6NJ_T0053864.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25693416 25707635 - MGP_C57BL6NJ_P0053864 Surf6 protein_coding protein_coding MGP_C57BL6NJ_T0053865.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25693753 25707606 - MGP_C57BL6NJ_P0053865 Surf6 protein_coding protein_coding MGP_C57BL6NJ_T0053866.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25695656 25707546 - Surf6 protein_coding processed_transcript MGP_C57BL6NJ_T0053867.1 MGP_C57BL6NJ_G0025914.1 mouse_genomes_project 2 25703849 25704524 - Surf6 protein_coding processed_transcript MGP_C57BL6NJ_T0013936.1 MGP_C57BL6NJ_G0011981.1 mouse_genomes_project 2 81303169 81303808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055219.1 MGP_C57BL6NJ_G0026151.1 mouse_genomes_project 2 53255564 53284085 - MGP_C57BL6NJ_P0055219 Arl5a protein_coding protein_coding MGP_C57BL6NJ_T0055220.1 MGP_C57BL6NJ_G0026151.1 mouse_genomes_project 2 53260244 53271917 - Arl5a protein_coding retained_intron MGP_C57BL6NJ_T0055268.1 MGP_C57BL6NJ_G0026163.1 mouse_genomes_project 2 59328182 59336010 - MGP_C57BL6NJ_P0055268 Ermn protein_coding protein_coding MGP_C57BL6NJ_T0101517.1 MGP_C57BL6NJ_G0039563.1 mouse_genomes_project 2 137640845 137640932 + Gm22424 snoRNA snoRNA MGP_C57BL6NJ_T0101499.1 MGP_C57BL6NJ_G0039545.1 mouse_genomes_project 2 83851603 83851734 + Gm22652 snoRNA snoRNA MGP_C57BL6NJ_T0102461.1 MGP_C57BL6NJ_G0040350.1 mouse_genomes_project 2 38469309 38485793 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0013752.1 MGP_C57BL6NJ_G0011797.1 mouse_genomes_project 2 12523032 12523411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013725.1 MGP_C57BL6NJ_G0011770.1 mouse_genomes_project 2 509085 509401 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011783.1 MGP_C57BL6NJ_G0009868.1 mouse_genomes_project 2 175187477 175187793 + Gm22596 misc_RNA misc_RNA MGP_C57BL6NJ_T0057982.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559132 135563110 + Bcl2l11 protein_coding processed_transcript MGP_C57BL6NJ_T0057983.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559132 135564590 + MGP_C57BL6NJ_P0057983 Bcl2l11 protein_coding protein_coding MGP_C57BL6NJ_T0057984.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559132 135593974 + MGP_C57BL6NJ_P0057984 Bcl2l11 protein_coding protein_coding MGP_C57BL6NJ_T0057985.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559133 135595560 + MGP_C57BL6NJ_P0057985 Bcl2l11 protein_coding protein_coding MGP_C57BL6NJ_T0057986.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559134 135591455 + MGP_C57BL6NJ_P0057986 Bcl2l11 protein_coding protein_coding MGP_C57BL6NJ_T0057987.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135559144 135594241 + MGP_C57BL6NJ_P0057987 Bcl2l11 protein_coding protein_coding MGP_C57BL6NJ_T0057988.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135560669 135563240 + Bcl2l11 protein_coding processed_transcript MGP_C57BL6NJ_T0057989.1 MGP_C57BL6NJ_G0026892.1 mouse_genomes_project 2 135561225 135561832 + Bcl2l11 protein_coding processed_transcript MGP_C57BL6NJ_T0014105.1 MGP_C57BL6NJ_G0012150.1 mouse_genomes_project 2 144397044 144397748 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018249.1 MGP_C57BL6NJ_G0015819.1 mouse_genomes_project 2 74072344 74075029 + Gm13663 processed_transcript processed_transcript MGP_C57BL6NJ_T0018250.1 MGP_C57BL6NJ_G0015819.1 mouse_genomes_project 2 74073305 74074989 + Gm13663 processed_transcript processed_transcript MGP_C57BL6NJ_T0055700.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73720458 73804146 + MGP_C57BL6NJ_P0055700 Metap1d protein_coding protein_coding MGP_C57BL6NJ_T0055701.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73720515 73794910 + Metap1d protein_coding processed_transcript MGP_C57BL6NJ_T0055702.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73720533 73804149 + Metap1d protein_coding processed_transcript MGP_C57BL6NJ_T0055703.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73720545 73803735 + Metap1d protein_coding processed_transcript MGP_C57BL6NJ_T0055704.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73789211 73796107 + Metap1d protein_coding processed_transcript MGP_C57BL6NJ_T0055705.1 MGP_C57BL6NJ_G0026242.1 mouse_genomes_project 2 73794366 73795239 + Metap1d protein_coding processed_transcript MGP_C57BL6NJ_T0099370.1 MGP_C57BL6NJ_G0037428.1 mouse_genomes_project 2 4251411 4252639 - Gm10115 sense_intronic sense_intronic MGP_C57BL6NJ_T0018298.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343579 120358029 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018299.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343687 120362273 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018300.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343688 120361564 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018301.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343690 120362086 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018302.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343703 120350651 + A530058N18Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018303.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343721 120347491 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018304.1 MGP_C57BL6NJ_G0015849.1 mouse_genomes_project 2 120343722 120361432 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0059374.1 MGP_C57BL6NJ_G0027221.1 mouse_genomes_project 2 168571728 168576710 + MGP_C57BL6NJ_P0059374 Slc32a1 protein_coding protein_coding MGP_C57BL6NJ_T0013802.1 MGP_C57BL6NJ_G0011847.1 mouse_genomes_project 2 30842458 30843253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058633.1 MGP_C57BL6NJ_G0027053.1 mouse_genomes_project 2 159599727 159653367 - MGP_C57BL6NJ_P0058633 Acss1 protein_coding protein_coding MGP_C57BL6NJ_T0058634.1 MGP_C57BL6NJ_G0027053.1 mouse_genomes_project 2 159609950 159621531 - Acss1 protein_coding processed_transcript MGP_C57BL6NJ_T0058635.1 MGP_C57BL6NJ_G0027053.1 mouse_genomes_project 2 159610030 159621529 - Acss1 protein_coding processed_transcript MGP_C57BL6NJ_T0058636.1 MGP_C57BL6NJ_G0027053.1 mouse_genomes_project 2 159621395 159653609 - Acss1 protein_coding processed_transcript MGP_C57BL6NJ_T0058637.1 MGP_C57BL6NJ_G0027053.1 mouse_genomes_project 2 159644715 159653323 - Acss1 protein_coding retained_intron MGP_C57BL6NJ_T0055035.1 MGP_C57BL6NJ_G0026126.1 mouse_genomes_project 2 38857633 38861672 - MGP_C57BL6NJ_P0055035 Rpl35 protein_coding protein_coding MGP_C57BL6NJ_T0055036.1 MGP_C57BL6NJ_G0026126.1 mouse_genomes_project 2 38857672 38861091 - Rpl35 protein_coding processed_transcript MGP_C57BL6NJ_T0055037.1 MGP_C57BL6NJ_G0026126.1 mouse_genomes_project 2 38860659 38861170 - Rpl35 protein_coding processed_transcript MGP_C57BL6NJ_T0010614.1 MGP_C57BL6NJ_G0008699.1 mouse_genomes_project 2 25207576 25207637 - Mir6996 miRNA miRNA MGP_C57BL6NJ_T0099084.1 MGP_C57BL6NJ_G0037148.1 mouse_genomes_project 2 174483770 174483888 - n-R5s207 rRNA rRNA MGP_C57BL6NJ_T0056177.1 MGP_C57BL6NJ_G0026356.1 mouse_genomes_project 2 89268674 89269613 + MGP_C57BL6NJ_P0056177 Olfr1015 protein_coding protein_coding MGP_C57BL6NJ_T0053999.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27472251 27503960 + MGP_C57BL6NJ_P0053999 Ralgds protein_coding protein_coding MGP_C57BL6NJ_T0054000.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27472452 27514095 + MGP_C57BL6NJ_P0054000 Ralgds protein_coding protein_coding MGP_C57BL6NJ_T0054001.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27494404 27514080 + MGP_C57BL6NJ_P0054001 Ralgds protein_coding protein_coding MGP_C57BL6NJ_T0054002.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27494591 27513650 + MGP_C57BL6NJ_P0054002 Ralgds protein_coding protein_coding MGP_C57BL6NJ_T0054003.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27494598 27514084 + Ralgds protein_coding retained_intron MGP_C57BL6NJ_T0054004.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27501735 27503912 + Ralgds protein_coding retained_intron MGP_C57BL6NJ_T0054005.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27503342 27506090 + MGP_C57BL6NJ_P0054005 Ralgds protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054006.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27506306 27508234 + Ralgds protein_coding retained_intron MGP_C57BL6NJ_T0054007.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27508563 27509990 + Ralgds protein_coding retained_intron MGP_C57BL6NJ_T0054008.1 MGP_C57BL6NJ_G0025942.1 mouse_genomes_project 2 27510071 27513339 + MGP_C57BL6NJ_P0054008 Ralgds protein_coding protein_coding MGP_C57BL6NJ_T0058194.1 MGP_C57BL6NJ_G0026941.1 mouse_genomes_project 2 138720652 138739142 - MGP_C57BL6NJ_P0058194 Siglec1 protein_coding protein_coding MGP_C57BL6NJ_T0058195.1 MGP_C57BL6NJ_G0026941.1 mouse_genomes_project 2 138723486 138739142 - MGP_C57BL6NJ_P0058195 Siglec1 protein_coding protein_coding MGP_C57BL6NJ_T0058196.1 MGP_C57BL6NJ_G0026941.1 mouse_genomes_project 2 138735949 138739142 - MGP_C57BL6NJ_P0058196 Siglec1 protein_coding protein_coding MGP_C57BL6NJ_T0057065.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116040393 116065126 + MGP_C57BL6NJ_P0057065 Ccdc34 protein_coding protein_coding MGP_C57BL6NJ_T0057066.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116040538 116183283 + MGP_C57BL6NJ_P0057066 Ccdc34 protein_coding protein_coding MGP_C57BL6NJ_T0057067.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116040556 116065132 + MGP_C57BL6NJ_P0057067 Ccdc34 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057068.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116044549 116061073 + Ccdc34 protein_coding retained_intron MGP_C57BL6NJ_T0057069.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116057836 116064659 + Ccdc34 protein_coding retained_intron MGP_C57BL6NJ_T0057070.1 MGP_C57BL6NJ_G0026665.1 mouse_genomes_project 2 116060704 116064474 + Ccdc34 protein_coding retained_intron MGP_C57BL6NJ_T0007371.1 MGP_C57BL6NJ_G0006044.1 mouse_genomes_project 2 52006810 52064737 + Gm13497 lincRNA lincRNA MGP_C57BL6NJ_T0057297.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125773901 125798766 + MGP_C57BL6NJ_P0057297 Casc5 protein_coding protein_coding MGP_C57BL6NJ_T0057298.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125773901 125838878 + MGP_C57BL6NJ_P0057298 Casc5 protein_coding protein_coding MGP_C57BL6NJ_T0057299.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125773929 125795467 + MGP_C57BL6NJ_P0057299 Casc5 protein_coding protein_coding MGP_C57BL6NJ_T0057300.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125773932 125802414 + MGP_C57BL6NJ_P0057300 Casc5 protein_coding protein_coding MGP_C57BL6NJ_T0057301.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125784063 125840258 + MGP_C57BL6NJ_P0057301 Casc5 protein_coding protein_coding MGP_C57BL6NJ_T0057302.1 MGP_C57BL6NJ_G0026751.1 mouse_genomes_project 2 125784079 125793592 + MGP_C57BL6NJ_P0057302 Casc5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060078.1 MGP_C57BL6NJ_G0027400.1 mouse_genomes_project 2 190225201 190277919 + MGP_C57BL6NJ_P0060078 Cdh26 protein_coding protein_coding MGP_C57BL6NJ_T0060079.1 MGP_C57BL6NJ_G0027400.1 mouse_genomes_project 2 190225277 190277921 + MGP_C57BL6NJ_P0060079 Cdh26 protein_coding protein_coding MGP_C57BL6NJ_T0060080.1 MGP_C57BL6NJ_G0027400.1 mouse_genomes_project 2 190248549 190257141 + Cdh26 protein_coding retained_intron MGP_C57BL6NJ_T0059546.1 MGP_C57BL6NJ_G0027266.1 mouse_genomes_project 2 174582810 174585088 - MGP_C57BL6NJ_P0059546 Svs3b protein_coding protein_coding MGP_C57BL6NJ_T0056166.1 MGP_C57BL6NJ_G0026346.1 mouse_genomes_project 2 89032029 89032974 + MGP_C57BL6NJ_P0056166 Olfr998 protein_coding protein_coding MGP_C57BL6NJ_T0055620.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72013353 72150399 + MGP_C57BL6NJ_P0055620 Ubr3 protein_coding protein_coding MGP_C57BL6NJ_T0055621.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72013353 72150399 + MGP_C57BL6NJ_P0055621 Ubr3 protein_coding protein_coding MGP_C57BL6NJ_T0055622.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72013410 72060062 + MGP_C57BL6NJ_P0055622 Ubr3 protein_coding protein_coding MGP_C57BL6NJ_T0055623.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72057462 72066704 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0055624.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72112252 72132742 + MGP_C57BL6NJ_P0055624 Ubr3 protein_coding protein_coding MGP_C57BL6NJ_T0055625.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72117178 72148931 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0055626.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72124014 72132880 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0055627.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72132560 72142851 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0055628.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72146513 72147572 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0055629.1 MGP_C57BL6NJ_G0026228.1 mouse_genomes_project 2 72146897 72148606 + Ubr3 protein_coding processed_transcript MGP_C57BL6NJ_T0053348.1 MGP_C57BL6NJ_G0025824.1 mouse_genomes_project 2 22796157 22798782 + MGP_C57BL6NJ_P0053348 Il1f10 protein_coding protein_coding MGP_C57BL6NJ_T0010641.1 MGP_C57BL6NJ_G0008726.1 mouse_genomes_project 2 38675831 38675907 + Mir181a-2 miRNA miRNA MGP_C57BL6NJ_T0004233.1 MGP_C57BL6NJ_G0003745.1 mouse_genomes_project 2 136777967 136800338 + Gm14024 antisense antisense MGP_C57BL6NJ_T0056281.1 MGP_C57BL6NJ_G0026447.1 mouse_genomes_project 2 91801553 91802498 + MGP_C57BL6NJ_P0056281 Olfr1143 protein_coding protein_coding MGP_C57BL6NJ_T0054671.1 MGP_C57BL6NJ_G0026043.1 mouse_genomes_project 2 32220844 32285036 - MGP_C57BL6NJ_P0054671 Stxbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054672.1 MGP_C57BL6NJ_G0026043.1 mouse_genomes_project 2 32220849 32250469 - Stxbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0054673.1 MGP_C57BL6NJ_G0026043.1 mouse_genomes_project 2 32221203 32284993 - MGP_C57BL6NJ_P0054673 Stxbp1 protein_coding protein_coding MGP_C57BL6NJ_T0054674.1 MGP_C57BL6NJ_G0026043.1 mouse_genomes_project 2 32249792 32250875 - Stxbp1 protein_coding retained_intron MGP_C57BL6NJ_T0053282.1 MGP_C57BL6NJ_G0025807.1 mouse_genomes_project 2 20892850 20893522 - MGP_C57BL6NJ_P0053282 protein_coding protein_coding MGP_C57BL6NJ_T0014194.1 MGP_C57BL6NJ_G0012239.1 mouse_genomes_project 2 178047413 178047772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055492.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67609047 67805490 + MGP_C57BL6NJ_P0055492 Csrnp3 protein_coding protein_coding MGP_C57BL6NJ_T0055493.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67609122 67799550 + MGP_C57BL6NJ_P0055493 Csrnp3 protein_coding protein_coding MGP_C57BL6NJ_T0055494.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67609125 67642330 + Csrnp3 protein_coding retained_intron MGP_C57BL6NJ_T0055495.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67609135 67797223 + MGP_C57BL6NJ_P0055495 Csrnp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055496.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67624080 67714398 + Csrnp3 protein_coding retained_intron MGP_C57BL6NJ_T0055497.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67695500 67797890 + MGP_C57BL6NJ_P0055497 Csrnp3 protein_coding protein_coding MGP_C57BL6NJ_T0055498.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67697101 67797428 + MGP_C57BL6NJ_P0055498 Csrnp3 protein_coding protein_coding MGP_C57BL6NJ_T0055499.1 MGP_C57BL6NJ_G0026199.1 mouse_genomes_project 2 67713907 67796997 + MGP_C57BL6NJ_P0055499 Csrnp3 protein_coding protein_coding MGP_C57BL6NJ_T0004243.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140212972 140234483 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0004244.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140213054 140234524 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0004245.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140213054 140236109 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0004246.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140213066 140246264 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0004247.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140213082 140246065 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0004248.1 MGP_C57BL6NJ_G0003753.1 mouse_genomes_project 2 140213082 140234484 + 1700026D11Rik antisense antisense MGP_C57BL6NJ_T0007333.1 MGP_C57BL6NJ_G0006014.1 mouse_genomes_project 2 24860080 24861078 + 1810012K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0054929.1 MGP_C57BL6NJ_G0026088.1 mouse_genomes_project 2 36304258 36305194 + MGP_C57BL6NJ_P0054929 Olfr345 protein_coding protein_coding MGP_C57BL6NJ_T0053522.1 MGP_C57BL6NJ_G0025853.1 mouse_genomes_project 2 23890741 23891784 + MGP_C57BL6NJ_P0053522 Tmem210 protein_coding protein_coding MGP_C57BL6NJ_T0053523.1 MGP_C57BL6NJ_G0025853.1 mouse_genomes_project 2 23890797 23891786 + Tmem210 protein_coding processed_transcript MGP_C57BL6NJ_T0001170.1 MGP_C57BL6NJ_G0001076.1 mouse_genomes_project 2 10755418 10757031 + TEC TEC MGP_C57BL6NJ_T0055616.1 MGP_C57BL6NJ_G0026227.1 mouse_genomes_project 2 71982735 71998445 - MGP_C57BL6NJ_P0055616 Mettl5 protein_coding protein_coding MGP_C57BL6NJ_T0055617.1 MGP_C57BL6NJ_G0026227.1 mouse_genomes_project 2 71982751 71998427 - MGP_C57BL6NJ_P0055617 Mettl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055618.1 MGP_C57BL6NJ_G0026227.1 mouse_genomes_project 2 71982755 71985456 - Mettl5 protein_coding retained_intron MGP_C57BL6NJ_T0055619.1 MGP_C57BL6NJ_G0026227.1 mouse_genomes_project 2 71989705 71998434 - Mettl5 protein_coding retained_intron MGP_C57BL6NJ_T0018247.1 MGP_C57BL6NJ_G0015817.1 mouse_genomes_project 2 71982949 71983715 - Gm13625 processed_transcript processed_transcript MGP_C57BL6NJ_T0055553.1 MGP_C57BL6NJ_G0026213.1 mouse_genomes_project 2 71150879 71215160 + MGP_C57BL6NJ_P0055553 Nostrin protein_coding protein_coding MGP_C57BL6NJ_T0055554.1 MGP_C57BL6NJ_G0026213.1 mouse_genomes_project 2 71203063 71211378 + Nostrin protein_coding processed_transcript MGP_C57BL6NJ_T0054925.1 MGP_C57BL6NJ_G0026084.1 mouse_genomes_project 2 36110623 36111562 + MGP_C57BL6NJ_P0054925 Olfr340 protein_coding protein_coding MGP_C57BL6NJ_T0007317.1 MGP_C57BL6NJ_G0006004.1 mouse_genomes_project 2 17550320 17555205 + 4930447M23Rik lincRNA lincRNA MGP_C57BL6NJ_T0007318.1 MGP_C57BL6NJ_G0006004.1 mouse_genomes_project 2 17550841 17557053 + 4930447M23Rik lincRNA lincRNA MGP_C57BL6NJ_T0007319.1 MGP_C57BL6NJ_G0006004.1 mouse_genomes_project 2 17550940 17554939 + 4930447M23Rik lincRNA lincRNA MGP_C57BL6NJ_T0010610.1 MGP_C57BL6NJ_G0008695.1 mouse_genomes_project 2 23506053 23506179 + Gm22875 miRNA miRNA MGP_C57BL6NJ_T0013899.1 MGP_C57BL6NJ_G0011944.1 mouse_genomes_project 2 66537022 66537612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056165.1 MGP_C57BL6NJ_G0026345.1 mouse_genomes_project 2 88914964 88953446 - MGP_C57BL6NJ_P0056165 4833423E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0055887.1 MGP_C57BL6NJ_G0026287.1 mouse_genomes_project 2 79345176 79355245 - MGP_C57BL6NJ_P0055887 Fkbp7 protein_coding protein_coding MGP_C57BL6NJ_T0055888.1 MGP_C57BL6NJ_G0026287.1 mouse_genomes_project 2 79345195 79347376 - Fkbp7 protein_coding processed_transcript MGP_C57BL6NJ_T0055889.1 MGP_C57BL6NJ_G0026287.1 mouse_genomes_project 2 79347839 79355291 - MGP_C57BL6NJ_P0055889 Fkbp7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055890.1 MGP_C57BL6NJ_G0026287.1 mouse_genomes_project 2 79353536 79355260 - Fkbp7 protein_coding retained_intron MGP_C57BL6NJ_T0014171.1 MGP_C57BL6NJ_G0012216.1 mouse_genomes_project 2 166431296 166431888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054778.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34346326 34353321 + MGP_C57BL6NJ_P0054778 Hspa5 protein_coding protein_coding MGP_C57BL6NJ_T0054779.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34346451 34352305 + MGP_C57BL6NJ_P0054779 Hspa5 protein_coding protein_coding MGP_C57BL6NJ_T0054780.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34346455 34349081 + MGP_C57BL6NJ_P0054780 Hspa5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054781.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34346937 34349966 + Hspa5 protein_coding retained_intron MGP_C57BL6NJ_T0054782.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34349439 34350107 + Hspa5 protein_coding retained_intron MGP_C57BL6NJ_T0054783.1 MGP_C57BL6NJ_G0026058.1 mouse_genomes_project 2 34350620 34351389 + Hspa5 protein_coding retained_intron MGP_C57BL6NJ_T0013934.1 MGP_C57BL6NJ_G0011979.1 mouse_genomes_project 2 80068410 80069016 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059788.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177605762 177649915 + Cse1l protein_coding processed_transcript MGP_C57BL6NJ_T0059789.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177605781 177651754 + MGP_C57BL6NJ_P0059789 Cse1l protein_coding protein_coding MGP_C57BL6NJ_T0059790.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177605833 177651466 + MGP_C57BL6NJ_P0059790 Cse1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059791.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177618101 177651158 + MGP_C57BL6NJ_P0059791 Cse1l protein_coding protein_coding MGP_C57BL6NJ_T0059792.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177632899 177651173 + MGP_C57BL6NJ_P0059792 Cse1l protein_coding protein_coding MGP_C57BL6NJ_T0059793.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177632934 177637773 + Cse1l protein_coding retained_intron MGP_C57BL6NJ_T0059794.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177633093 177640457 + Cse1l protein_coding retained_intron MGP_C57BL6NJ_T0059795.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177633137 177642791 + Cse1l protein_coding processed_transcript MGP_C57BL6NJ_T0059796.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177640124 177650218 + Cse1l protein_coding retained_intron MGP_C57BL6NJ_T0059797.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177640151 177646819 + MGP_C57BL6NJ_P0059797 Cse1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059798.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177642462 177646615 + Cse1l protein_coding retained_intron MGP_C57BL6NJ_T0059799.1 MGP_C57BL6NJ_G0027327.1 mouse_genomes_project 2 177646197 177647184 + Cse1l protein_coding retained_intron MGP_C57BL6NJ_T0010682.1 MGP_C57BL6NJ_G0008767.1 mouse_genomes_project 2 127921340 127921417 - Gm44325 miRNA miRNA MGP_C57BL6NJ_T0013866.1 MGP_C57BL6NJ_G0011911.1 mouse_genomes_project 2 54516972 54517418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060311.1 MGP_C57BL6NJ_G0027445.1 mouse_genomes_project 2 193536071 193537846 + MGP_C57BL6NJ_P0060311 Abhd16b protein_coding protein_coding MGP_C57BL6NJ_T0004067.1 MGP_C57BL6NJ_G0003628.1 mouse_genomes_project 2 24254506 24284188 + Fcnaos antisense antisense MGP_C57BL6NJ_T0004068.1 MGP_C57BL6NJ_G0003628.1 mouse_genomes_project 2 24263867 24284188 + Fcnaos antisense antisense MGP_C57BL6NJ_T0004069.1 MGP_C57BL6NJ_G0003628.1 mouse_genomes_project 2 24278019 24284189 + Fcnaos antisense antisense MGP_C57BL6NJ_T0004070.1 MGP_C57BL6NJ_G0003628.1 mouse_genomes_project 2 24283075 24284191 + Fcnaos antisense antisense MGP_C57BL6NJ_T0013770.1 MGP_C57BL6NJ_G0011815.1 mouse_genomes_project 2 16776675 16776937 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014200.1 MGP_C57BL6NJ_G0012245.1 mouse_genomes_project 2 183388659 183389274 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100199.1 MGP_C57BL6NJ_G0038245.1 mouse_genomes_project 2 83534144 83534247 + Gm24461 snRNA snRNA MGP_C57BL6NJ_T0056212.1 MGP_C57BL6NJ_G0026389.1 mouse_genomes_project 2 90099145 90100087 - MGP_C57BL6NJ_P0056212 Olfr1061 protein_coding protein_coding MGP_C57BL6NJ_T0058612.1 MGP_C57BL6NJ_G0027044.1 mouse_genomes_project 2 158299980 158303669 + MGP_C57BL6NJ_P0058612 Cst10 protein_coding protein_coding MGP_C57BL6NJ_T0058613.1 MGP_C57BL6NJ_G0027044.1 mouse_genomes_project 2 158300172 158303669 + MGP_C57BL6NJ_P0058613 Cst10 protein_coding protein_coding MGP_C57BL6NJ_T0058614.1 MGP_C57BL6NJ_G0027044.1 mouse_genomes_project 2 158300256 158303669 + MGP_C57BL6NJ_P0058614 Cst10 protein_coding protein_coding MGP_C57BL6NJ_T0018344.1 MGP_C57BL6NJ_G0015868.1 mouse_genomes_project 2 147423965 147885702 - processed_transcript processed_transcript MGP_C57BL6NJ_T0004293.1 MGP_C57BL6NJ_G0003791.1 mouse_genomes_project 2 168107000 168110742 + 1700060C20Rik antisense antisense MGP_C57BL6NJ_T0058350.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143603471 143691720 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058351.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143605096 143691807 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058352.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143605157 143840642 + Plcb4 protein_coding retained_intron MGP_C57BL6NJ_T0058353.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143605253 143949640 + MGP_C57BL6NJ_P0058353 Plcb4 protein_coding protein_coding MGP_C57BL6NJ_T0058354.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143690798 143873894 + Plcb4 protein_coding retained_intron MGP_C57BL6NJ_T0058355.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143690798 143980916 + MGP_C57BL6NJ_P0058355 Plcb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058356.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143717314 143871833 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058357.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143762488 143980731 + MGP_C57BL6NJ_P0058357 Plcb4 protein_coding protein_coding MGP_C57BL6NJ_T0058358.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143834628 143982249 + MGP_C57BL6NJ_P0058358 Plcb4 protein_coding protein_coding MGP_C57BL6NJ_T0058359.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143850514 143905954 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058360.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143908720 143917001 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058361.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143913118 143916954 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058362.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143949655 143954823 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0058363.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143954502 143982240 + MGP_C57BL6NJ_P0058363 Plcb4 protein_coding protein_coding MGP_C57BL6NJ_T0058364.1 MGP_C57BL6NJ_G0026976.1 mouse_genomes_project 2 143974892 143975706 + Plcb4 protein_coding processed_transcript MGP_C57BL6NJ_T0056181.1 MGP_C57BL6NJ_G0026360.1 mouse_genomes_project 2 89341045 89343413 + MGP_C57BL6NJ_P0056181 Olfr1020 protein_coding protein_coding MGP_C57BL6NJ_T0001173.1 MGP_C57BL6NJ_G0001079.1 mouse_genomes_project 2 10926033 10927953 - TEC TEC MGP_C57BL6NJ_T0056285.1 MGP_C57BL6NJ_G0026451.1 mouse_genomes_project 2 91904408 91905341 + MGP_C57BL6NJ_P0056285 Olfr1152 protein_coding protein_coding MGP_C57BL6NJ_T0057099.1 MGP_C57BL6NJ_G0026683.1 mouse_genomes_project 2 117529699 117530530 + MGP_C57BL6NJ_P0057099 protein_coding protein_coding MGP_C57BL6NJ_T0057100.1 MGP_C57BL6NJ_G0026683.1 mouse_genomes_project 2 117529700 117530491 + MGP_C57BL6NJ_P0057100 protein_coding protein_coding MGP_C57BL6NJ_T0007423.1 MGP_C57BL6NJ_G0006087.1 mouse_genomes_project 2 85528482 85549671 - A130030D18Rik lincRNA lincRNA MGP_C57BL6NJ_T0014057.1 MGP_C57BL6NJ_G0012102.1 mouse_genomes_project 2 121079809 121080591 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057907.1 MGP_C57BL6NJ_G0026871.1 mouse_genomes_project 2 134504287 134508966 - MGP_C57BL6NJ_P0057907 Itpripl1 protein_coding protein_coding MGP_C57BL6NJ_T0057908.1 MGP_C57BL6NJ_G0026871.1 mouse_genomes_project 2 134505932 134508830 - MGP_C57BL6NJ_P0057908 Itpripl1 protein_coding protein_coding MGP_C57BL6NJ_T0057909.1 MGP_C57BL6NJ_G0026871.1 mouse_genomes_project 2 134506052 134508114 - MGP_C57BL6NJ_P0057909 Itpripl1 protein_coding protein_coding MGP_C57BL6NJ_T0010702.1 MGP_C57BL6NJ_G0008787.1 mouse_genomes_project 2 165159751 165159830 + Mir499 miRNA miRNA MGP_C57BL6NJ_T0059971.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183896351 183910162 + MGP_C57BL6NJ_P0059971 Tfap2c protein_coding protein_coding MGP_C57BL6NJ_T0059972.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183897411 183909782 + Tfap2c protein_coding processed_transcript MGP_C57BL6NJ_T0059973.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183897522 183909366 + Tfap2c protein_coding processed_transcript MGP_C57BL6NJ_T0059974.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183897540 183910159 + MGP_C57BL6NJ_P0059974 Tfap2c protein_coding protein_coding MGP_C57BL6NJ_T0059975.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183897749 183910159 + MGP_C57BL6NJ_P0059975 Tfap2c protein_coding protein_coding MGP_C57BL6NJ_T0059976.1 MGP_C57BL6NJ_G0027371.1 mouse_genomes_project 2 183898874 183900277 + Tfap2c protein_coding processed_transcript MGP_C57BL6NJ_T0103050.1 MGP_C57BL6NJ_G0040844.1 mouse_genomes_project 2 115460632 115487784 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013851.1 MGP_C57BL6NJ_G0011896.1 mouse_genomes_project 2 49973932 49974707 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057181.1 MGP_C57BL6NJ_G0026724.1 mouse_genomes_project 2 120525363 120533542 - MGP_C57BL6NJ_P0057181 Zfp770 protein_coding protein_coding MGP_C57BL6NJ_T0057182.1 MGP_C57BL6NJ_G0026724.1 mouse_genomes_project 2 120530634 120533513 - Zfp770 protein_coding processed_transcript MGP_C57BL6NJ_T0007382.1 MGP_C57BL6NJ_G0006053.1 mouse_genomes_project 2 62362352 62373096 - Gm13582 lincRNA lincRNA MGP_C57BL6NJ_T0056024.1 MGP_C57BL6NJ_G0026307.1 mouse_genomes_project 2 83641881 83644775 + MGP_C57BL6NJ_P0056024 protein_coding protein_coding MGP_C57BL6NJ_T0058609.1 MGP_C57BL6NJ_G0027042.1 mouse_genomes_project 2 157825260 157839229 - MGP_C57BL6NJ_P0058609 Gm1330 protein_coding protein_coding MGP_C57BL6NJ_T0058610.1 MGP_C57BL6NJ_G0027042.1 mouse_genomes_project 2 157825260 157839229 - MGP_C57BL6NJ_P0058610 Gm1330 protein_coding protein_coding MGP_C57BL6NJ_T0007604.1 MGP_C57BL6NJ_G0006237.1 mouse_genomes_project 2 192789123 192858044 - Gm14342 lincRNA lincRNA MGP_C57BL6NJ_T0004234.1 MGP_C57BL6NJ_G0003746.1 mouse_genomes_project 2 136909930 136915776 + Il1bos antisense antisense MGP_C57BL6NJ_T0004235.1 MGP_C57BL6NJ_G0003746.1 mouse_genomes_project 2 136909935 136915761 + Il1bos antisense antisense MGP_C57BL6NJ_T0004236.1 MGP_C57BL6NJ_G0003746.1 mouse_genomes_project 2 136913156 136915105 + Il1bos antisense antisense MGP_C57BL6NJ_T0057350.1 MGP_C57BL6NJ_G0026765.1 mouse_genomes_project 2 126302042 126333765 - MGP_C57BL6NJ_P0057350 Exd1 protein_coding protein_coding MGP_C57BL6NJ_T0057351.1 MGP_C57BL6NJ_G0026765.1 mouse_genomes_project 2 126302048 126326979 - MGP_C57BL6NJ_P0057351 Exd1 protein_coding protein_coding MGP_C57BL6NJ_T0057352.1 MGP_C57BL6NJ_G0026765.1 mouse_genomes_project 2 126324302 126333332 - MGP_C57BL6NJ_P0057352 Exd1 protein_coding protein_coding MGP_C57BL6NJ_T0007312.1 MGP_C57BL6NJ_G0005999.1 mouse_genomes_project 2 8983898 8988522 + Gm13293 lincRNA lincRNA MGP_C57BL6NJ_T0004299.1 MGP_C57BL6NJ_G0003797.1 mouse_genomes_project 2 173751032 173752081 + 2310001K24Rik antisense antisense MGP_C57BL6NJ_T0004300.1 MGP_C57BL6NJ_G0003797.1 mouse_genomes_project 2 173751620 173752079 + 2310001K24Rik antisense antisense MGP_C57BL6NJ_T0004103.1 MGP_C57BL6NJ_G0003654.1 mouse_genomes_project 2 32631616 32635592 + Gm13528 antisense antisense MGP_C57BL6NJ_T0007365.1 MGP_C57BL6NJ_G0006038.1 mouse_genomes_project 2 46183417 46188370 - Gm13467 lincRNA lincRNA MGP_C57BL6NJ_T0056395.1 MGP_C57BL6NJ_G0026538.1 mouse_genomes_project 2 94369050 94387924 + MGP_C57BL6NJ_P0056395 Olfr1263 protein_coding protein_coding MGP_C57BL6NJ_T0059118.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165659283 165702727 - MGP_C57BL6NJ_P0059118 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059119.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165659286 165702680 - Cpne1 protein_coding retained_intron MGP_C57BL6NJ_T0059120.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165659286 165702731 - MGP_C57BL6NJ_P0059120 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059123.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165659288 165702735 - MGP_C57BL6NJ_P0059123 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059124.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660774 165661737 - Cpne1 protein_coding processed_transcript MGP_C57BL6NJ_T0059125.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660796 165702693 - MGP_C57BL6NJ_P0059125 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059126.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660830 165663696 - MGP_C57BL6NJ_P0059126 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059127.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660835 165663721 - Cpne1 protein_coding retained_intron MGP_C57BL6NJ_T0059128.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660949 165702696 - MGP_C57BL6NJ_P0059128 Cpne1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059129.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165660957 165665602 - MGP_C57BL6NJ_P0059129 Cpne1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059130.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165661539 165663994 - Cpne1 protein_coding retained_intron MGP_C57BL6NJ_T0059131.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165661642 165702757 - MGP_C57BL6NJ_P0059131 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059132.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165664840 165702701 - MGP_C57BL6NJ_P0059132 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059133.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165664861 165666033 - Cpne1 protein_coding retained_intron MGP_C57BL6NJ_T0059134.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165665608 165702751 - MGP_C57BL6NJ_P0059134 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059135.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165666015 165702701 - MGP_C57BL6NJ_P0059135 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059136.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165666341 165702655 - MGP_C57BL6NJ_P0059136 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0059137.1 MGP_C57BL6NJ_G0027179.1 mouse_genomes_project 2 165666352 165690415 - MGP_C57BL6NJ_P0059137 Cpne1 protein_coding protein_coding MGP_C57BL6NJ_T0058506.1 MGP_C57BL6NJ_G0027012.1 mouse_genomes_project 2 153155379 153330251 + MGP_C57BL6NJ_P0058506 Dtd1 protein_coding protein_coding MGP_C57BL6NJ_T0058507.1 MGP_C57BL6NJ_G0027012.1 mouse_genomes_project 2 153174021 153329933 + Dtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0058508.1 MGP_C57BL6NJ_G0027012.1 mouse_genomes_project 2 153235219 153305742 + Dtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0058509.1 MGP_C57BL6NJ_G0027012.1 mouse_genomes_project 2 153290526 153329987 + Dtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0058510.1 MGP_C57BL6NJ_G0027012.1 mouse_genomes_project 2 153297148 153329768 + Dtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0004040.1 MGP_C57BL6NJ_G0003604.1 mouse_genomes_project 2 2150946 2154800 + 4930551O13Rik antisense antisense MGP_C57BL6NJ_T0059480.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173677066 173697180 - MGP_C57BL6NJ_P0059480 Oser1 protein_coding protein_coding MGP_C57BL6NJ_T0059481.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173677097 173703768 - MGP_C57BL6NJ_P0059481 Oser1 protein_coding protein_coding MGP_C57BL6NJ_T0059482.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173677796 173696796 - Oser1 protein_coding processed_transcript MGP_C57BL6NJ_T0059483.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173677830 173687511 - Oser1 protein_coding processed_transcript MGP_C57BL6NJ_T0059484.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173678125 173703768 - Oser1 protein_coding processed_transcript MGP_C57BL6NJ_T0059485.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173680978 173693020 - MGP_C57BL6NJ_P0059485 Oser1 protein_coding protein_coding MGP_C57BL6NJ_T0059486.1 MGP_C57BL6NJ_G0027244.1 mouse_genomes_project 2 173701947 173703621 - Oser1 protein_coding processed_transcript MGP_C57BL6NJ_T0004134.1 MGP_C57BL6NJ_G0003676.1 mouse_genomes_project 2 64359693 64361205 + Gm13569 antisense antisense MGP_C57BL6NJ_T0058931.1 MGP_C57BL6NJ_G0027144.1 mouse_genomes_project 2 163993366 164014305 - MGP_C57BL6NJ_P0058931 Pxmp4 protein_coding protein_coding MGP_C57BL6NJ_T0058932.1 MGP_C57BL6NJ_G0027144.1 mouse_genomes_project 2 164005684 164014285 - MGP_C57BL6NJ_P0058932 Pxmp4 protein_coding protein_coding MGP_C57BL6NJ_T0054414.1 MGP_C57BL6NJ_G0026004.1 mouse_genomes_project 2 30753058 30810290 + MGP_C57BL6NJ_P0054414 Ass1 protein_coding protein_coding MGP_C57BL6NJ_T0054415.1 MGP_C57BL6NJ_G0026004.1 mouse_genomes_project 2 30785296 30798942 + Ass1 protein_coding retained_intron MGP_C57BL6NJ_T0054416.1 MGP_C57BL6NJ_G0026004.1 mouse_genomes_project 2 30788250 30804389 + Ass1 protein_coding retained_intron MGP_C57BL6NJ_T0054417.1 MGP_C57BL6NJ_G0026004.1 mouse_genomes_project 2 30808104 30810149 + Ass1 protein_coding retained_intron MGP_C57BL6NJ_T0054288.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29566500 29581791 - MGP_C57BL6NJ_P0054288 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054289.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29566505 29572709 - Crat protein_coding processed_transcript MGP_C57BL6NJ_T0054290.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29567130 29581833 - MGP_C57BL6NJ_P0054290 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054291.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29568527 29571318 - MGP_C57BL6NJ_P0054291 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054292.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29568607 29581544 - MGP_C57BL6NJ_P0054292 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054293.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29568666 29570991 - MGP_C57BL6NJ_P0054293 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054294.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29574099 29581328 - MGP_C57BL6NJ_P0054294 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054295.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29574144 29581568 - MGP_C57BL6NJ_P0054295 Crat protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054296.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29579060 29580359 - Crat protein_coding processed_transcript MGP_C57BL6NJ_T0054297.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29579156 29581538 - MGP_C57BL6NJ_P0054297 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054298.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29579177 29581353 - MGP_C57BL6NJ_P0054298 Crat protein_coding protein_coding MGP_C57BL6NJ_T0054299.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29580079 29581620 - Crat protein_coding processed_transcript MGP_C57BL6NJ_T0054300.1 MGP_C57BL6NJ_G0025987.1 mouse_genomes_project 2 29580614 29581427 - MGP_C57BL6NJ_P0054300 Crat protein_coding protein_coding MGP_C57BL6NJ_T0007388.1 MGP_C57BL6NJ_G0006059.1 mouse_genomes_project 2 69027700 69044976 + Gm1322 lincRNA lincRNA MGP_C57BL6NJ_T0053349.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22844312 22858893 + MGP_C57BL6NJ_P0053349 Il1rn protein_coding protein_coding MGP_C57BL6NJ_T0053350.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22844315 22846869 + Il1rn protein_coding retained_intron MGP_C57BL6NJ_T0053351.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22844315 22856856 + MGP_C57BL6NJ_P0053351 Il1rn protein_coding protein_coding MGP_C57BL6NJ_T0053352.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22852747 22857206 + MGP_C57BL6NJ_P0053352 Il1rn protein_coding protein_coding MGP_C57BL6NJ_T0053353.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22852769 22858335 + MGP_C57BL6NJ_P0053353 Il1rn protein_coding protein_coding MGP_C57BL6NJ_T0053354.1 MGP_C57BL6NJ_G0025825.1 mouse_genomes_project 2 22852807 22853753 + Il1rn protein_coding processed_transcript MGP_C57BL6NJ_T0059478.1 MGP_C57BL6NJ_G0027243.1 mouse_genomes_project 2 173604219 173667326 - MGP_C57BL6NJ_P0059478 Jph2 protein_coding protein_coding MGP_C57BL6NJ_T0059479.1 MGP_C57BL6NJ_G0027243.1 mouse_genomes_project 2 173604219 173667370 - MGP_C57BL6NJ_P0059479 Jph2 protein_coding protein_coding MGP_C57BL6NJ_T0103044.1 MGP_C57BL6NJ_G0040838.1 mouse_genomes_project 2 94713380 94714305 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018381.1 MGP_C57BL6NJ_G0015885.1 mouse_genomes_project 2 178349483 178416758 + Gm11476 processed_transcript processed_transcript MGP_C57BL6NJ_T0055527.1 MGP_C57BL6NJ_G0026208.1 mouse_genomes_project 2 69461817 69725104 + B3galt1 protein_coding processed_transcript MGP_C57BL6NJ_T0055528.1 MGP_C57BL6NJ_G0026208.1 mouse_genomes_project 2 69660204 70066277 + MGP_C57BL6NJ_P0055528 B3galt1 protein_coding protein_coding MGP_C57BL6NJ_T0055529.1 MGP_C57BL6NJ_G0026208.1 mouse_genomes_project 2 70054762 70068641 + MGP_C57BL6NJ_P0055529 B3galt1 protein_coding protein_coding MGP_C57BL6NJ_T0055530.1 MGP_C57BL6NJ_G0026208.1 mouse_genomes_project 2 70065839 70070816 + MGP_C57BL6NJ_P0055530 B3galt1 protein_coding protein_coding MGP_C57BL6NJ_T0013867.1 MGP_C57BL6NJ_G0011912.1 mouse_genomes_project 2 55245858 55246675 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018214.1 MGP_C57BL6NJ_G0015796.1 mouse_genomes_project 2 25194649 25195834 + Gm13568 processed_transcript processed_transcript MGP_C57BL6NJ_T0001205.1 MGP_C57BL6NJ_G0001111.1 mouse_genomes_project 2 38328079 38330679 - TEC TEC MGP_C57BL6NJ_T0056459.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95491005 95541700 + Celf1 protein_coding processed_transcript MGP_C57BL6NJ_T0056460.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95491020 95573310 + MGP_C57BL6NJ_P0056460 Celf1 protein_coding protein_coding MGP_C57BL6NJ_T0056461.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95491081 95552640 + Celf1 protein_coding processed_transcript MGP_C57BL6NJ_T0056462.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95491160 95555507 + Celf1 protein_coding processed_transcript MGP_C57BL6NJ_T0056463.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95492498 95571397 + MGP_C57BL6NJ_P0056463 Celf1 protein_coding protein_coding MGP_C57BL6NJ_T0056464.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95519165 95541762 + Celf1 protein_coding processed_transcript MGP_C57BL6NJ_T0056465.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95541691 95571394 + MGP_C57BL6NJ_P0056465 Celf1 protein_coding protein_coding MGP_C57BL6NJ_T0056466.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95552602 95573310 + MGP_C57BL6NJ_P0056466 Celf1 protein_coding protein_coding MGP_C57BL6NJ_T0056467.1 MGP_C57BL6NJ_G0026558.1 mouse_genomes_project 2 95566301 95567185 + Celf1 protein_coding processed_transcript MGP_C57BL6NJ_T0058942.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226933 164306542 + MGP_C57BL6NJ_P0058942 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058943.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226943 164303133 + MGP_C57BL6NJ_P0058943 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058944.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226947 164306558 + MGP_C57BL6NJ_P0058944 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058945.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226955 164301230 + MGP_C57BL6NJ_P0058945 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058946.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226970 164306541 + MGP_C57BL6NJ_P0058946 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058947.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164226994 164306558 + MGP_C57BL6NJ_P0058947 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058948.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164227189 164303346 + MGP_C57BL6NJ_P0058948 Raly protein_coding protein_coding MGP_C57BL6NJ_T0058949.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164227191 164287788 + Raly protein_coding processed_transcript MGP_C57BL6NJ_T0058950.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164227206 164296635 + Raly protein_coding processed_transcript MGP_C57BL6NJ_T0058952.1 MGP_C57BL6NJ_G0027149.1 mouse_genomes_project 2 164227552 164296748 + Raly protein_coding processed_transcript MGP_C57BL6NJ_T0058616.1 MGP_C57BL6NJ_G0027046.1 mouse_genomes_project 2 158737922 158738612 - MGP_C57BL6NJ_P0058616 C530025M09Rik protein_coding protein_coding MGP_C57BL6NJ_T0053484.1 MGP_C57BL6NJ_G0025843.1 mouse_genomes_project 2 23819924 23823971 - MGP_C57BL6NJ_P0053484 Tubb4b protein_coding protein_coding MGP_C57BL6NJ_T0053485.1 MGP_C57BL6NJ_G0025843.1 mouse_genomes_project 2 23822791 23823923 - Tubb4b protein_coding processed_transcript MGP_C57BL6NJ_T0056174.1 MGP_C57BL6NJ_G0026353.1 mouse_genomes_project 2 89234825 89235761 - MGP_C57BL6NJ_P0056174 Olfr1012 protein_coding protein_coding MGP_C57BL6NJ_T0010566.1 MGP_C57BL6NJ_G0008651.1 mouse_genomes_project 2 8036023 8036117 + Mir466f-2 miRNA miRNA MGP_C57BL6NJ_T0004105.1 MGP_C57BL6NJ_G0003656.1 mouse_genomes_project 2 33130041 33131442 + C130021I20Rik antisense antisense MGP_C57BL6NJ_T0004106.1 MGP_C57BL6NJ_G0003656.1 mouse_genomes_project 2 33130179 33135203 + C130021I20Rik antisense antisense MGP_C57BL6NJ_T0013845.1 MGP_C57BL6NJ_G0011890.1 mouse_genomes_project 2 46902691 46903041 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013788.1 MGP_C57BL6NJ_G0011833.1 mouse_genomes_project 2 23135691 23137303 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013836.1 MGP_C57BL6NJ_G0011881.1 mouse_genomes_project 2 40124619 40124986 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007564.1 MGP_C57BL6NJ_G0006203.1 mouse_genomes_project 2 177160916 177164406 - Gm14267 lincRNA lincRNA MGP_C57BL6NJ_T0102998.1 MGP_C57BL6NJ_G0040792.1 mouse_genomes_project 2 35982940 35983879 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103002.1 MGP_C57BL6NJ_G0040796.1 mouse_genomes_project 2 36728175 36729119 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0056824.1 MGP_C57BL6NJ_G0026616.1 mouse_genomes_project 2 107712947 107824666 - MGP_C57BL6NJ_P0056824 Trim44 protein_coding protein_coding MGP_C57BL6NJ_T0056825.1 MGP_C57BL6NJ_G0026616.1 mouse_genomes_project 2 107717322 107824023 - MGP_C57BL6NJ_P0056825 Trim44 protein_coding protein_coding MGP_C57BL6NJ_T0056826.1 MGP_C57BL6NJ_G0026616.1 mouse_genomes_project 2 107772950 107833039 - MGP_C57BL6NJ_P0056826 Trim44 protein_coding protein_coding MGP_C57BL6NJ_T0058597.1 MGP_C57BL6NJ_G0027036.1 mouse_genomes_project 2 157597709 157601786 + MGP_C57BL6NJ_P0058597 Cst12 protein_coding protein_coding MGP_C57BL6NJ_T0058598.1 MGP_C57BL6NJ_G0027036.1 mouse_genomes_project 2 157597720 157601895 + MGP_C57BL6NJ_P0058598 Cst12 protein_coding protein_coding MGP_C57BL6NJ_T0057569.1 MGP_C57BL6NJ_G0026800.1 mouse_genomes_project 2 127990740 128031875 - MGP_C57BL6NJ_P0057569 Tgm5 protein_coding protein_coding MGP_C57BL6NJ_T0057570.1 MGP_C57BL6NJ_G0026800.1 mouse_genomes_project 2 128019089 128031856 - Tgm5 protein_coding retained_intron MGP_C57BL6NJ_T0058274.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139735393 139831655 - MGP_C57BL6NJ_P0058274 Slc23a2 protein_coding protein_coding MGP_C57BL6NJ_T0058275.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139738311 139739583 - Slc23a2 protein_coding processed_transcript MGP_C57BL6NJ_T0058276.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139743605 139749938 - Slc23a2 protein_coding processed_transcript MGP_C57BL6NJ_T0058277.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139757662 139831655 - Slc23a2 protein_coding processed_transcript MGP_C57BL6NJ_T0058278.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139758434 139760835 - Slc23a2 protein_coding processed_transcript MGP_C57BL6NJ_T0058279.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139771960 139779053 - Slc23a2 protein_coding processed_transcript MGP_C57BL6NJ_T0058280.1 MGP_C57BL6NJ_G0026959.1 mouse_genomes_project 2 139778647 139798276 - MGP_C57BL6NJ_P0058280 Slc23a2 protein_coding protein_coding MGP_C57BL6NJ_T0057924.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134643727 134661331 + Stard7 protein_coding processed_transcript MGP_C57BL6NJ_T0057925.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134643771 134677758 + MGP_C57BL6NJ_P0057925 Stard7 protein_coding protein_coding MGP_C57BL6NJ_T0057926.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134644213 134677751 + MGP_C57BL6NJ_P0057926 Stard7 protein_coding protein_coding MGP_C57BL6NJ_T0057927.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134660980 134674661 + Stard7 protein_coding retained_intron MGP_C57BL6NJ_T0057928.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134668876 134676132 + Stard7 protein_coding retained_intron MGP_C57BL6NJ_T0057929.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134670927 134676157 + Stard7 protein_coding processed_transcript MGP_C57BL6NJ_T0057930.1 MGP_C57BL6NJ_G0026876.1 mouse_genomes_project 2 134670929 134676186 + Stard7 protein_coding processed_transcript MGP_C57BL6NJ_T0059970.1 MGP_C57BL6NJ_G0027370.1 mouse_genomes_project 2 183814788 183816600 + MGP_C57BL6NJ_P0059970 Fam209 protein_coding protein_coding MGP_C57BL6NJ_T0059695.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175770925 - Slc35c2 protein_coding retained_intron MGP_C57BL6NJ_T0059696.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175780677 - MGP_C57BL6NJ_P0059696 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059697.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175780749 - MGP_C57BL6NJ_P0059697 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059698.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175780677 - MGP_C57BL6NJ_P0059698 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059699.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175780791 - MGP_C57BL6NJ_P0059699 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059700.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175769637 175780746 - MGP_C57BL6NJ_P0059700 Slc35c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059701.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175770535 175775145 - Slc35c2 protein_coding retained_intron MGP_C57BL6NJ_T0059702.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175771437 175776290 - MGP_C57BL6NJ_P0059702 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059703.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175771473 175776522 - MGP_C57BL6NJ_P0059703 Slc35c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059704.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175773700 175776522 - MGP_C57BL6NJ_P0059704 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059705.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175773869 175780757 - MGP_C57BL6NJ_P0059705 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059706.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175773869 175780758 - MGP_C57BL6NJ_P0059706 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059707.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175773957 175779474 - MGP_C57BL6NJ_P0059707 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059708.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175773962 175780749 - MGP_C57BL6NJ_P0059708 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0059709.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175774632 175780760 - Slc35c2 protein_coding retained_intron MGP_C57BL6NJ_T0059710.1 MGP_C57BL6NJ_G0027312.1 mouse_genomes_project 2 175775800 175780694 - MGP_C57BL6NJ_P0059710 Slc35c2 protein_coding protein_coding MGP_C57BL6NJ_T0004111.1 MGP_C57BL6NJ_G0003659.1 mouse_genomes_project 2 34586531 34605963 + Gm13449 antisense antisense MGP_C57BL6NJ_T0007334.1 MGP_C57BL6NJ_G0006015.1 mouse_genomes_project 2 24910499 24915449 - Gm13553 lincRNA lincRNA MGP_C57BL6NJ_T0056245.1 MGP_C57BL6NJ_G0026420.1 mouse_genomes_project 2 91193927 91205401 + MGP_C57BL6NJ_P0056245 Olfr1115 protein_coding protein_coding MGP_C57BL6NJ_T0018236.1 MGP_C57BL6NJ_G0015810.1 mouse_genomes_project 2 51007411 51082566 + Gm13483 processed_transcript processed_transcript MGP_C57BL6NJ_T0018237.1 MGP_C57BL6NJ_G0015810.1 mouse_genomes_project 2 51007465 51153432 + Gm13483 processed_transcript processed_transcript MGP_C57BL6NJ_T0059400.1 MGP_C57BL6NJ_G0027228.1 mouse_genomes_project 2 170665151 170722154 - MGP_C57BL6NJ_P0059400 protein_coding protein_coding MGP_C57BL6NJ_T0013954.1 MGP_C57BL6NJ_G0011999.1 mouse_genomes_project 2 85794078 85794418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059929.1 MGP_C57BL6NJ_G0027354.1 mouse_genomes_project 2 180638259 180643108 - MGP_C57BL6NJ_P0059929 Gm11011 protein_coding protein_coding MGP_C57BL6NJ_T0056093.1 MGP_C57BL6NJ_G0026321.1 mouse_genomes_project 2 88003265 88011150 - MGP_C57BL6NJ_P0056093 Tmx2 protein_coding protein_coding MGP_C57BL6NJ_T0056094.1 MGP_C57BL6NJ_G0026321.1 mouse_genomes_project 2 88008427 88011462 - MGP_C57BL6NJ_P0056094 Tmx2 protein_coding protein_coding MGP_C57BL6NJ_T0060060.1 MGP_C57BL6NJ_G0027394.1 mouse_genomes_project 2 186218831 186287188 + MGP_C57BL6NJ_P0060060 Zfp831 protein_coding protein_coding MGP_C57BL6NJ_T0055054.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38927662 39062561 - MGP_C57BL6NJ_P0055054 protein_coding protein_coding MGP_C57BL6NJ_T0055055.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38936213 39062532 - MGP_C57BL6NJ_P0055055 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055056.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38936455 39062519 - MGP_C57BL6NJ_P0055056 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055057.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38936520 38961278 - MGP_C57BL6NJ_P0055057 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055058.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38941365 39062557 - MGP_C57BL6NJ_P0055058 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055059.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38963282 39062561 - protein_coding retained_intron MGP_C57BL6NJ_T0055060.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38965349 39062557 - protein_coding retained_intron MGP_C57BL6NJ_T0055061.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38968576 38970631 - protein_coding retained_intron MGP_C57BL6NJ_T0055062.1 MGP_C57BL6NJ_G0026129.1 mouse_genomes_project 2 38968725 38984930 - protein_coding retained_intron MGP_C57BL6NJ_T0052744.1 MGP_C57BL6NJ_G0025717.1 mouse_genomes_project 2 59423 178972 + MGP_C57BL6NJ_P0052744 Fam171a1 protein_coding protein_coding MGP_C57BL6NJ_T0052745.1 MGP_C57BL6NJ_G0025717.1 mouse_genomes_project 2 59552 178969 + MGP_C57BL6NJ_P0052745 Fam171a1 protein_coding protein_coding MGP_C57BL6NJ_T0099082.1 MGP_C57BL6NJ_G0037146.1 mouse_genomes_project 2 128920838 128920952 - Gm23983 rRNA rRNA MGP_C57BL6NJ_T0058168.1 MGP_C57BL6NJ_G0026938.1 mouse_genomes_project 2 138544941 138674343 + MGP_C57BL6NJ_P0058168 Atrn protein_coding protein_coding MGP_C57BL6NJ_T0058169.1 MGP_C57BL6NJ_G0026938.1 mouse_genomes_project 2 138544947 138649427 + Atrn protein_coding retained_intron MGP_C57BL6NJ_T0058170.1 MGP_C57BL6NJ_G0026938.1 mouse_genomes_project 2 138545377 138576513 + Atrn protein_coding retained_intron MGP_C57BL6NJ_T0058171.1 MGP_C57BL6NJ_G0026938.1 mouse_genomes_project 2 138625580 138638613 + Atrn protein_coding retained_intron MGP_C57BL6NJ_T0058172.1 MGP_C57BL6NJ_G0026938.1 mouse_genomes_project 2 138640202 138649455 + Atrn protein_coding retained_intron MGP_C57BL6NJ_T0007451.1 MGP_C57BL6NJ_G0006109.1 mouse_genomes_project 2 108901671 108912951 - BC016548 lincRNA lincRNA MGP_C57BL6NJ_T0007452.1 MGP_C57BL6NJ_G0006109.1 mouse_genomes_project 2 108907885 108912949 - BC016548 lincRNA lincRNA MGP_C57BL6NJ_T0055943.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80646531 80714893 - MGP_C57BL6NJ_P0055943 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055944.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80661807 80715088 - MGP_C57BL6NJ_P0055944 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055945.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80661807 80715066 - MGP_C57BL6NJ_P0055945 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055946.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80661920 80693081 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0055947.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80661920 80714896 - MGP_C57BL6NJ_P0055947 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055948.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80661922 80715066 - MGP_C57BL6NJ_P0055948 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055949.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80673585 80675480 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0055950.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80685020 80714912 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0055951.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80694662 80714896 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0055952.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80697906 80714651 - MGP_C57BL6NJ_P0055952 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055953.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80697992 80714902 - MGP_C57BL6NJ_P0055953 Cwc22 protein_coding protein_coding MGP_C57BL6NJ_T0055954.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80698048 80705684 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0055955.1 MGP_C57BL6NJ_G0026293.1 mouse_genomes_project 2 80699394 80705742 - Cwc22 protein_coding processed_transcript MGP_C57BL6NJ_T0007315.1 MGP_C57BL6NJ_G0006002.1 mouse_genomes_project 2 15164730 15168475 - Gm13322 lincRNA lincRNA MGP_C57BL6NJ_T0053266.1 MGP_C57BL6NJ_G0025803.1 mouse_genomes_project 2 19541217 19568370 - MGP_C57BL6NJ_P0053266 Enkur protein_coding protein_coding MGP_C57BL6NJ_T0053267.1 MGP_C57BL6NJ_G0025803.1 mouse_genomes_project 2 19555915 19568244 - Enkur protein_coding processed_transcript MGP_C57BL6NJ_T0053268.1 MGP_C57BL6NJ_G0025803.1 mouse_genomes_project 2 19559458 19568357 - Enkur protein_coding processed_transcript MGP_C57BL6NJ_T0014121.1 MGP_C57BL6NJ_G0012166.1 mouse_genomes_project 2 152384464 152384795 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052885.1 MGP_C57BL6NJ_G0025743.1 mouse_genomes_project 2 3175239 3295743 + MGP_C57BL6NJ_P0052885 Upf2 protein_coding protein_coding MGP_C57BL6NJ_T0052886.1 MGP_C57BL6NJ_G0025743.1 mouse_genomes_project 2 3254323 3295738 + MGP_C57BL6NJ_P0052886 Upf2 protein_coding protein_coding MGP_C57BL6NJ_T0052887.1 MGP_C57BL6NJ_G0025743.1 mouse_genomes_project 2 3287999 3294542 + Upf2 protein_coding processed_transcript MGP_C57BL6NJ_T0058883.1 MGP_C57BL6NJ_G0027130.1 mouse_genomes_project 2 163342726 163350541 + MGP_C57BL6NJ_P0058883 Bpifa2 protein_coding protein_coding MGP_C57BL6NJ_T0058884.1 MGP_C57BL6NJ_G0027130.1 mouse_genomes_project 2 163342737 163348906 + MGP_C57BL6NJ_P0058884 Bpifa2 protein_coding protein_coding MGP_C57BL6NJ_T0058885.1 MGP_C57BL6NJ_G0027130.1 mouse_genomes_project 2 163348175 163350072 + Bpifa2 protein_coding retained_intron MGP_C57BL6NJ_T0058886.1 MGP_C57BL6NJ_G0027130.1 mouse_genomes_project 2 163349057 163350538 + Bpifa2 protein_coding retained_intron MGP_C57BL6NJ_T0056184.1 MGP_C57BL6NJ_G0026363.1 mouse_genomes_project 2 89424392 89425376 - MGP_C57BL6NJ_P0056184 Olfr1024 protein_coding protein_coding MGP_C57BL6NJ_T0057291.1 MGP_C57BL6NJ_G0026748.1 mouse_genomes_project 2 125644077 125646167 + MGP_C57BL6NJ_P0057291 Chst14 protein_coding protein_coding MGP_C57BL6NJ_T0057292.1 MGP_C57BL6NJ_G0026748.1 mouse_genomes_project 2 125644095 125646161 + MGP_C57BL6NJ_P0057292 Chst14 protein_coding protein_coding MGP_C57BL6NJ_T0054243.1 MGP_C57BL6NJ_G0025982.1 mouse_genomes_project 2 29438465 29440569 - MGP_C57BL6NJ_P0054243 Dolk protein_coding protein_coding MGP_C57BL6NJ_T0056827.1 MGP_C57BL6NJ_G0026617.1 mouse_genomes_project 2 107875817 107878951 - MGP_C57BL6NJ_P0056827 Fjx1 protein_coding protein_coding MGP_C57BL6NJ_T0059650.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175281045 175298770 - MGP_C57BL6NJ_P0059650 Pltp protein_coding protein_coding MGP_C57BL6NJ_T0059651.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175281045 175298848 - MGP_C57BL6NJ_P0059651 Pltp protein_coding protein_coding MGP_C57BL6NJ_T0059652.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175281045 175298679 - MGP_C57BL6NJ_P0059652 Pltp protein_coding protein_coding MGP_C57BL6NJ_T0059653.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175288139 175297933 - Pltp protein_coding retained_intron MGP_C57BL6NJ_T0059654.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175293609 175298763 - Pltp protein_coding processed_transcript MGP_C57BL6NJ_T0059655.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175293746 175298757 - MGP_C57BL6NJ_P0059655 Pltp protein_coding protein_coding MGP_C57BL6NJ_T0059656.1 MGP_C57BL6NJ_G0027303.1 mouse_genomes_project 2 175295446 175298767 - MGP_C57BL6NJ_P0059656 Pltp protein_coding protein_coding MGP_C57BL6NJ_T0013917.1 MGP_C57BL6NJ_G0011962.1 mouse_genomes_project 2 74087066 74087596 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056007.1 MGP_C57BL6NJ_G0026303.1 mouse_genomes_project 2 83377172 83416671 - MGP_C57BL6NJ_P0056007 Frzb protein_coding protein_coding MGP_C57BL6NJ_T0056008.1 MGP_C57BL6NJ_G0026303.1 mouse_genomes_project 2 83378316 83407680 - Frzb protein_coding processed_transcript MGP_C57BL6NJ_T0010720.1 MGP_C57BL6NJ_G0008805.1 mouse_genomes_project 2 185182465 185182584 - Mir6340 miRNA miRNA MGP_C57BL6NJ_T0103015.1 MGP_C57BL6NJ_G0040809.1 mouse_genomes_project 2 89454530 89455872 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013891.1 MGP_C57BL6NJ_G0011936.1 mouse_genomes_project 2 61961020 61962162 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018378.1 MGP_C57BL6NJ_G0015884.1 mouse_genomes_project 2 177928598 177933963 + 1110018N20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018379.1 MGP_C57BL6NJ_G0015884.1 mouse_genomes_project 2 177928802 177934229 + 1110018N20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018380.1 MGP_C57BL6NJ_G0015884.1 mouse_genomes_project 2 177929343 177934512 + 1110018N20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0103023.1 MGP_C57BL6NJ_G0040817.1 mouse_genomes_project 2 90276354 90277891 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058075.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864653 137869469 + MGP_C57BL6NJ_P0058075 Nop56 protein_coding protein_coding MGP_C57BL6NJ_T0058076.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864667 137869468 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058077.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864669 137869210 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058078.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864670 137868657 + MGP_C57BL6NJ_P0058078 Nop56 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058079.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864678 137867764 + MGP_C57BL6NJ_P0058079 Nop56 protein_coding protein_coding MGP_C57BL6NJ_T0058080.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137864715 137866325 + MGP_C57BL6NJ_P0058080 Nop56 protein_coding protein_coding MGP_C57BL6NJ_T0058081.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137865054 137865923 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058082.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866022 137866493 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058083.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866385 137869190 + MGP_C57BL6NJ_P0058083 Nop56 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058084.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866526 137867797 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058085.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866701 137868182 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058086.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866823 137868186 + MGP_C57BL6NJ_P0058086 Nop56 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058087.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137866891 137867509 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058088.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137867448 137868690 + Nop56 protein_coding retained_intron MGP_C57BL6NJ_T0058089.1 MGP_C57BL6NJ_G0026918.1 mouse_genomes_project 2 137867541 137868457 + MGP_C57BL6NJ_P0058089 Nop56 protein_coding protein_coding MGP_C57BL6NJ_T0057663.1 MGP_C57BL6NJ_G0026813.1 mouse_genomes_project 2 128411106 128416375 - MGP_C57BL6NJ_P0057663 Ell3 protein_coding protein_coding MGP_C57BL6NJ_T0057664.1 MGP_C57BL6NJ_G0026813.1 mouse_genomes_project 2 128411123 128414698 - MGP_C57BL6NJ_P0057664 Ell3 protein_coding protein_coding MGP_C57BL6NJ_T0057666.1 MGP_C57BL6NJ_G0026813.1 mouse_genomes_project 2 128412076 128413248 - Ell3 protein_coding retained_intron MGP_C57BL6NJ_T0007543.1 MGP_C57BL6NJ_G0006183.1 mouse_genomes_project 2 167444505 167446243 - Platr27 lincRNA lincRNA MGP_C57BL6NJ_T0007484.1 MGP_C57BL6NJ_G0006135.1 mouse_genomes_project 2 126390618 126397069 + 1700020I14Rik lincRNA lincRNA MGP_C57BL6NJ_T0007485.1 MGP_C57BL6NJ_G0006135.1 mouse_genomes_project 2 126390624 126405657 + 1700020I14Rik lincRNA lincRNA MGP_C57BL6NJ_T0018336.1 MGP_C57BL6NJ_G0015863.1 mouse_genomes_project 2 136830881 136841328 + Gm14023 processed_transcript processed_transcript MGP_C57BL6NJ_T0053216.1 MGP_C57BL6NJ_G0025795.1 mouse_genomes_project 2 17156947 17158473 + MGP_C57BL6NJ_P0053216 4930426L09Rik protein_coding protein_coding MGP_C57BL6NJ_T0101544.1 MGP_C57BL6NJ_G0039590.1 mouse_genomes_project 2 172974197 172974323 + Gm22936 snoRNA snoRNA MGP_C57BL6NJ_T0059866.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790375 178832854 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0059867.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790645 178837502 + MGP_C57BL6NJ_P0059867 Ptpn1 protein_coding protein_coding MGP_C57BL6NJ_T0059868.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790690 178825902 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0059869.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790690 178837502 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0059870.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790713 178821804 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0059871.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178790713 178825850 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0059872.1 MGP_C57BL6NJ_G0027342.1 mouse_genomes_project 2 178809363 178823184 + Ptpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0014104.1 MGP_C57BL6NJ_G0012149.1 mouse_genomes_project 2 144392920 144393562 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058583.1 MGP_C57BL6NJ_G0027029.1 mouse_genomes_project 2 157220369 157228633 - MGP_C57BL6NJ_P0058583 Cd93 protein_coding protein_coding MGP_C57BL6NJ_T0053111.1 MGP_C57BL6NJ_G0025778.1 mouse_genomes_project 2 12193133 12310447 + MGP_C57BL6NJ_P0053111 Slc39a12 protein_coding protein_coding MGP_C57BL6NJ_T0053112.1 MGP_C57BL6NJ_G0025778.1 mouse_genomes_project 2 12193323 12194351 + MGP_C57BL6NJ_P0053112 Slc39a12 protein_coding protein_coding MGP_C57BL6NJ_T0013888.1 MGP_C57BL6NJ_G0011933.1 mouse_genomes_project 2 61471212 61472207 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054151.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29020581 29048591 + MGP_C57BL6NJ_P0054151 Gle1 protein_coding protein_coding MGP_C57BL6NJ_T0054152.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29020583 29024038 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0054153.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29020678 29024578 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0054154.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29027386 29028812 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0054155.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29027749 29029789 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0054156.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29034043 29035677 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0054157.1 MGP_C57BL6NJ_G0025966.1 mouse_genomes_project 2 29043727 29046437 + Gle1 protein_coding retained_intron MGP_C57BL6NJ_T0060414.1 MGP_C57BL6NJ_G0027460.1 mouse_genomes_project 2 194093415 194106449 + MGP_C57BL6NJ_P0060414 Gm14496 protein_coding protein_coding MGP_C57BL6NJ_T0060415.1 MGP_C57BL6NJ_G0027460.1 mouse_genomes_project 2 194093553 194107128 + Gm14496 protein_coding processed_transcript MGP_C57BL6NJ_T0060416.1 MGP_C57BL6NJ_G0027460.1 mouse_genomes_project 2 194101078 194106428 + Gm14496 protein_coding transcribed_processed_pseudogene MGP_C57BL6NJ_T0004295.1 MGP_C57BL6NJ_G0003793.1 mouse_genomes_project 2 170857541 170865524 - Gm27206 antisense antisense MGP_C57BL6NJ_T0055766.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75774509 75803480 + MGP_C57BL6NJ_P0055766 Scrn3 protein_coding protein_coding MGP_C57BL6NJ_T0055767.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75774562 75784773 + MGP_C57BL6NJ_P0055767 Scrn3 protein_coding protein_coding MGP_C57BL6NJ_T0055768.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75774567 75777702 + Scrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0055769.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75774567 75795464 + Scrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0055770.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75774584 75785999 + Scrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0055771.1 MGP_C57BL6NJ_G0026255.1 mouse_genomes_project 2 75783376 75801961 + Scrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0054890.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35404607 35649000 - MGP_C57BL6NJ_P0054890 Ttll11 protein_coding protein_coding MGP_C57BL6NJ_T0054891.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35404607 35649000 - MGP_C57BL6NJ_P0054891 Ttll11 protein_coding protein_coding MGP_C57BL6NJ_T0054892.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35405028 35649142 - MGP_C57BL6NJ_P0054892 Ttll11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054893.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35405313 35610608 - MGP_C57BL6NJ_P0054893 Ttll11 protein_coding protein_coding MGP_C57BL6NJ_T0054894.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35441613 35551607 - Ttll11 protein_coding processed_transcript MGP_C57BL6NJ_T0054895.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35558890 35614749 - Ttll11 protein_coding processed_transcript MGP_C57BL6NJ_T0054896.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35571953 35649289 - Ttll11 protein_coding processed_transcript MGP_C57BL6NJ_T0054897.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35572248 35620393 - MGP_C57BL6NJ_P0054897 Ttll11 protein_coding protein_coding MGP_C57BL6NJ_T0054898.1 MGP_C57BL6NJ_G0026075.1 mouse_genomes_project 2 35572268 35622002 - MGP_C57BL6NJ_P0054898 Ttll11 protein_coding protein_coding MGP_C57BL6NJ_T0004110.1 MGP_C57BL6NJ_G0003658.1 mouse_genomes_project 2 33819637 33838401 + C79798 antisense antisense MGP_C57BL6NJ_T0056297.1 MGP_C57BL6NJ_G0026462.1 mouse_genomes_project 2 92123496 92124447 - MGP_C57BL6NJ_P0056297 Olfr1163 protein_coding protein_coding MGP_C57BL6NJ_T0056358.1 MGP_C57BL6NJ_G0026515.1 mouse_genomes_project 2 93743131 93744079 - MGP_C57BL6NJ_P0056358 Olfr1238 protein_coding protein_coding MGP_C57BL6NJ_T0004286.1 MGP_C57BL6NJ_G0003784.1 mouse_genomes_project 2 165129204 165131841 + Gssos1 antisense antisense MGP_C57BL6NJ_T0056344.1 MGP_C57BL6NJ_G0026504.1 mouse_genomes_project 2 93473405 93474341 - MGP_C57BL6NJ_P0056344 Olfr1223 protein_coding protein_coding MGP_C57BL6NJ_T0054741.1 MGP_C57BL6NJ_G0026054.1 mouse_genomes_project 2 33224659 33400562 - MGP_C57BL6NJ_P0054741 Mvb12b protein_coding protein_coding MGP_C57BL6NJ_T0054742.1 MGP_C57BL6NJ_G0026054.1 mouse_genomes_project 2 33290684 33294133 - Mvb12b protein_coding retained_intron MGP_C57BL6NJ_T0054743.1 MGP_C57BL6NJ_G0026054.1 mouse_genomes_project 2 33292541 33399516 - Mvb12b protein_coding processed_transcript MGP_C57BL6NJ_T0054744.1 MGP_C57BL6NJ_G0026054.1 mouse_genomes_project 2 33330466 33399516 - MGP_C57BL6NJ_P0054744 Mvb12b protein_coding protein_coding MGP_C57BL6NJ_T0054745.1 MGP_C57BL6NJ_G0026054.1 mouse_genomes_project 2 33386294 33400112 - Mvb12b protein_coding processed_transcript MGP_C57BL6NJ_T0057966.1 MGP_C57BL6NJ_G0026886.1 mouse_genomes_project 2 135030923 135055646 - MGP_C57BL6NJ_P0057966 Mal protein_coding protein_coding MGP_C57BL6NJ_T0057967.1 MGP_C57BL6NJ_G0026886.1 mouse_genomes_project 2 135032571 135055170 - MGP_C57BL6NJ_P0057967 Mal protein_coding protein_coding MGP_C57BL6NJ_T0057706.1 MGP_C57BL6NJ_G0026822.1 mouse_genomes_project 2 128982791 128986331 - MGP_C57BL6NJ_P0057706 Mageb3 protein_coding protein_coding MGP_C57BL6NJ_T0057414.1 MGP_C57BL6NJ_G0026777.1 mouse_genomes_project 2 126893790 126898902 + MGP_C57BL6NJ_P0057414 Jmjd7 protein_coding protein_coding MGP_C57BL6NJ_T0057416.1 MGP_C57BL6NJ_G0026777.1 mouse_genomes_project 2 126893811 126896838 + MGP_C57BL6NJ_P0057416 Jmjd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057419.1 MGP_C57BL6NJ_G0026777.1 mouse_genomes_project 2 126893823 126898176 + Jmjd7 protein_coding processed_transcript MGP_C57BL6NJ_T0057420.1 MGP_C57BL6NJ_G0026777.1 mouse_genomes_project 2 126893864 126897693 + Jmjd7 protein_coding processed_transcript MGP_C57BL6NJ_T0057421.1 MGP_C57BL6NJ_G0026777.1 mouse_genomes_project 2 126893901 126896685 + MGP_C57BL6NJ_P0057421 Jmjd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007535.1 MGP_C57BL6NJ_G0006177.1 mouse_genomes_project 2 164581858 164584151 - 2310005A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0058589.1 MGP_C57BL6NJ_G0027032.1 mouse_genomes_project 2 157507173 157545079 - MGP_C57BL6NJ_P0058589 Napb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058590.1 MGP_C57BL6NJ_G0027032.1 mouse_genomes_project 2 157507173 157545133 - MGP_C57BL6NJ_P0058590 Napb protein_coding protein_coding MGP_C57BL6NJ_T0058591.1 MGP_C57BL6NJ_G0027032.1 mouse_genomes_project 2 157519603 157545057 - Napb protein_coding retained_intron MGP_C57BL6NJ_T0018312.1 MGP_C57BL6NJ_G0015854.1 mouse_genomes_project 2 127115147 127115825 - Gm13997 processed_transcript processed_transcript MGP_C57BL6NJ_T0013812.1 MGP_C57BL6NJ_G0011857.1 mouse_genomes_project 2 34951307 34951862 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014177.1 MGP_C57BL6NJ_G0012222.1 mouse_genomes_project 2 169811498 169812030 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011789.1 MGP_C57BL6NJ_G0009874.1 mouse_genomes_project 2 192797414 192797532 + Gm22842 misc_RNA misc_RNA MGP_C57BL6NJ_T0103039.1 MGP_C57BL6NJ_G0040833.1 mouse_genomes_project 2 92841632 92842607 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013963.1 MGP_C57BL6NJ_G0012008.1 mouse_genomes_project 2 89228753 89229693 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057681.1 MGP_C57BL6NJ_G0026817.1 mouse_genomes_project 2 128466349 128492139 - MGP_C57BL6NJ_P0057681 protein_coding protein_coding MGP_C57BL6NJ_T0013750.1 MGP_C57BL6NJ_G0011795.1 mouse_genomes_project 2 12500707 12501425 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004281.1 MGP_C57BL6NJ_G0003780.1 mouse_genomes_project 2 162908204 162909801 - Dnmt3bos antisense antisense MGP_C57BL6NJ_T0004292.1 MGP_C57BL6NJ_G0003790.1 mouse_genomes_project 2 167965598 168002871 - antisense antisense MGP_C57BL6NJ_T0013730.1 MGP_C57BL6NJ_G0011775.1 mouse_genomes_project 2 1925105 1925582 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058020.1 MGP_C57BL6NJ_G0026903.1 mouse_genomes_project 2 136578760 136611229 + MGP_C57BL6NJ_P0058020 Ttl protein_coding protein_coding MGP_C57BL6NJ_T0058021.1 MGP_C57BL6NJ_G0026903.1 mouse_genomes_project 2 136578803 136580924 + Ttl protein_coding processed_transcript MGP_C57BL6NJ_T0058022.1 MGP_C57BL6NJ_G0026903.1 mouse_genomes_project 2 136588869 136604727 + MGP_C57BL6NJ_P0058022 Ttl protein_coding protein_coding MGP_C57BL6NJ_T0010703.1 MGP_C57BL6NJ_G0008788.1 mouse_genomes_project 2 165926380 165926476 + Gm22759 miRNA miRNA MGP_C57BL6NJ_T0058073.1 MGP_C57BL6NJ_G0026917.1 mouse_genomes_project 2 137778684 137854621 + MGP_C57BL6NJ_P0058073 Tmc2 protein_coding protein_coding MGP_C57BL6NJ_T0058074.1 MGP_C57BL6NJ_G0026917.1 mouse_genomes_project 2 137781414 137854393 + MGP_C57BL6NJ_P0058074 Tmc2 protein_coding protein_coding MGP_C57BL6NJ_T0014210.1 MGP_C57BL6NJ_G0012255.1 mouse_genomes_project 2 190840594 190841609 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056302.1 MGP_C57BL6NJ_G0026467.1 mouse_genomes_project 2 92364261 92365200 - MGP_C57BL6NJ_P0056302 Olfr1168 protein_coding protein_coding MGP_C57BL6NJ_T0059182.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165795403 165853336 + MGP_C57BL6NJ_P0059182 protein_coding protein_coding MGP_C57BL6NJ_T0059183.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165795579 165912883 + MGP_C57BL6NJ_P0059183 protein_coding protein_coding MGP_C57BL6NJ_T0059184.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165795671 165912880 + protein_coding processed_transcript MGP_C57BL6NJ_T0059185.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165795691 165821986 + protein_coding retained_intron MGP_C57BL6NJ_T0059186.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165795693 165853540 + protein_coding retained_intron MGP_C57BL6NJ_T0059187.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165820873 165850846 + protein_coding processed_transcript MGP_C57BL6NJ_T0059188.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165862715 165875999 + protein_coding processed_transcript MGP_C57BL6NJ_T0059189.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165885971 165895723 + protein_coding processed_transcript MGP_C57BL6NJ_T0059190.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165896939 165901794 + protein_coding retained_intron MGP_C57BL6NJ_T0059191.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165899223 165901886 + protein_coding processed_transcript MGP_C57BL6NJ_T0059192.1 MGP_C57BL6NJ_G0027185.1 mouse_genomes_project 2 165899599 165907617 + protein_coding processed_transcript MGP_C57BL6NJ_T0053696.1 MGP_C57BL6NJ_G0025889.1 mouse_genomes_project 2 24501027 24503412 + MGP_C57BL6NJ_P0053696 Lcn9 protein_coding protein_coding MGP_C57BL6NJ_T0007407.1 MGP_C57BL6NJ_G0006074.1 mouse_genomes_project 2 77301191 77303276 - Haglr lincRNA lincRNA MGP_C57BL6NJ_T0007408.1 MGP_C57BL6NJ_G0006074.1 mouse_genomes_project 2 77303202 77318349 - Haglr lincRNA lincRNA MGP_C57BL6NJ_T0001169.1 MGP_C57BL6NJ_G0001075.1 mouse_genomes_project 2 10752624 10755281 + TEC TEC MGP_C57BL6NJ_T0013847.1 MGP_C57BL6NJ_G0011892.1 mouse_genomes_project 2 48894444 48894698 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004121.1 MGP_C57BL6NJ_G0003668.1 mouse_genomes_project 2 45497506 45502083 + Zeb2os antisense antisense MGP_C57BL6NJ_T0004122.1 MGP_C57BL6NJ_G0003668.1 mouse_genomes_project 2 45500236 45502083 + Zeb2os antisense antisense MGP_C57BL6NJ_T0055411.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63544863 63830185 + MGP_C57BL6NJ_P0055411 Slc4a10 protein_coding protein_coding MGP_C57BL6NJ_T0055412.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63544986 63828278 + Slc4a10 protein_coding processed_transcript MGP_C57BL6NJ_T0055413.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63544986 63830185 + MGP_C57BL6NJ_P0055413 Slc4a10 protein_coding protein_coding MGP_C57BL6NJ_T0055414.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63545046 63830185 + MGP_C57BL6NJ_P0055414 Slc4a10 protein_coding protein_coding MGP_C57BL6NJ_T0055415.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63660044 63673890 + Slc4a10 protein_coding processed_transcript MGP_C57BL6NJ_T0055416.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63769807 63771543 + Slc4a10 protein_coding processed_transcript MGP_C57BL6NJ_T0055417.1 MGP_C57BL6NJ_G0026186.1 mouse_genomes_project 2 63820798 63828832 + Slc4a10 protein_coding processed_transcript MGP_C57BL6NJ_T0004287.1 MGP_C57BL6NJ_G0003785.1 mouse_genomes_project 2 165130450 165131361 - Gm14257 antisense antisense MGP_C57BL6NJ_T0010663.1 MGP_C57BL6NJ_G0008748.1 mouse_genomes_project 2 97033329 97033392 - Mir7000 miRNA miRNA MGP_C57BL6NJ_T0013780.1 MGP_C57BL6NJ_G0011825.1 mouse_genomes_project 2 21092171 21092506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058626.1 MGP_C57BL6NJ_G0027048.1 mouse_genomes_project 2 159117566 159118599 - MGP_C57BL6NJ_P0058626 Gm21994 protein_coding protein_coding MGP_C57BL6NJ_T0058871.1 MGP_C57BL6NJ_G0027125.1 mouse_genomes_project 2 163205813 163229818 + MGP_C57BL6NJ_P0058871 Bpifb2 protein_coding protein_coding MGP_C57BL6NJ_T0058872.1 MGP_C57BL6NJ_G0027125.1 mouse_genomes_project 2 163205843 163207154 + Bpifb2 protein_coding retained_intron MGP_C57BL6NJ_T0103020.1 MGP_C57BL6NJ_G0040814.1 mouse_genomes_project 2 90203170 90204544 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099072.1 MGP_C57BL6NJ_G0037136.1 mouse_genomes_project 2 77511146 77511246 - n-R5s198 rRNA rRNA MGP_C57BL6NJ_T0058937.1 MGP_C57BL6NJ_G0027147.1 mouse_genomes_project 2 164073376 164118731 + Chmp4b protein_coding processed_transcript MGP_C57BL6NJ_T0058938.1 MGP_C57BL6NJ_G0027147.1 mouse_genomes_project 2 164078268 164118736 + MGP_C57BL6NJ_P0058938 Chmp4b protein_coding protein_coding MGP_C57BL6NJ_T0058939.1 MGP_C57BL6NJ_G0027147.1 mouse_genomes_project 2 164114996 164118232 + Chmp4b protein_coding retained_intron MGP_C57BL6NJ_T0056408.1 MGP_C57BL6NJ_G0026549.1 mouse_genomes_project 2 94789646 94803305 - MGP_C57BL6NJ_P0056408 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0059522.1 MGP_C57BL6NJ_G0027255.1 mouse_genomes_project 2 174156103 174221063 - MGP_C57BL6NJ_P0059522 Rims4 protein_coding protein_coding MGP_C57BL6NJ_T0056227.1 MGP_C57BL6NJ_G0026403.1 mouse_genomes_project 2 90719133 90720060 - MGP_C57BL6NJ_P0056227 Olfr1095 protein_coding protein_coding MGP_C57BL6NJ_T0057341.1 MGP_C57BL6NJ_G0026761.1 mouse_genomes_project 2 126056818 126063561 + Vps18 protein_coding retained_intron MGP_C57BL6NJ_T0057342.1 MGP_C57BL6NJ_G0026761.1 mouse_genomes_project 2 126056820 126067738 + MGP_C57BL6NJ_P0057342 Vps18 protein_coding protein_coding MGP_C57BL6NJ_T0057343.1 MGP_C57BL6NJ_G0026761.1 mouse_genomes_project 2 126056865 126067611 + Vps18 protein_coding processed_transcript MGP_C57BL6NJ_T0018229.1 MGP_C57BL6NJ_G0015806.1 mouse_genomes_project 2 34500205 34504714 + Gm13448 processed_transcript processed_transcript MGP_C57BL6NJ_T0057117.1 MGP_C57BL6NJ_G0026700.1 mouse_genomes_project 2 118244073 118245012 - MGP_C57BL6NJ_P0057117 protein_coding protein_coding MGP_C57BL6NJ_T0060357.1 MGP_C57BL6NJ_G0027450.1 mouse_genomes_project 2 193648298 193675534 + MGP_C57BL6NJ_P0060357 Prpf6 protein_coding protein_coding MGP_C57BL6NJ_T0060361.1 MGP_C57BL6NJ_G0027450.1 mouse_genomes_project 2 193658928 193716542 + MGP_C57BL6NJ_P0060361 Prpf6 protein_coding protein_coding MGP_C57BL6NJ_T0060362.1 MGP_C57BL6NJ_G0027450.1 mouse_genomes_project 2 193658931 193716551 + MGP_C57BL6NJ_P0060362 Prpf6 protein_coding protein_coding MGP_C57BL6NJ_T0060363.1 MGP_C57BL6NJ_G0027450.1 mouse_genomes_project 2 193658985 193702316 + Prpf6 protein_coding retained_intron MGP_C57BL6NJ_T0004154.1 MGP_C57BL6NJ_G0003692.1 mouse_genomes_project 2 74583038 74590655 - Rapgef4os2 antisense antisense MGP_C57BL6NJ_T0004207.1 MGP_C57BL6NJ_G0003726.1 mouse_genomes_project 2 120014859 120033760 - 4930533B01Rik antisense antisense MGP_C57BL6NJ_T0056383.1 MGP_C57BL6NJ_G0026532.1 mouse_genomes_project 2 94187224 94188130 - MGP_C57BL6NJ_P0056383 Olfr48 protein_coding protein_coding MGP_C57BL6NJ_T0052892.1 MGP_C57BL6NJ_G0025745.1 mouse_genomes_project 2 3444302 3468409 - MGP_C57BL6NJ_P0052892 Echdc3 protein_coding protein_coding MGP_C57BL6NJ_T0052893.1 MGP_C57BL6NJ_G0025745.1 mouse_genomes_project 2 3445346 3452046 - Echdc3 protein_coding processed_transcript MGP_C57BL6NJ_T0052894.1 MGP_C57BL6NJ_G0025745.1 mouse_genomes_project 2 3461381 3468355 - Echdc3 protein_coding retained_intron MGP_C57BL6NJ_T0056118.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88189571 88215436 + MGP_C57BL6NJ_P0056118 Slc43a1 protein_coding protein_coding MGP_C57BL6NJ_T0056119.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88190116 88202046 + MGP_C57BL6NJ_P0056119 Slc43a1 protein_coding protein_coding MGP_C57BL6NJ_T0056120.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88190129 88215444 + MGP_C57BL6NJ_P0056120 Slc43a1 protein_coding protein_coding MGP_C57BL6NJ_T0056121.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88190138 88214246 + Slc43a1 protein_coding retained_intron MGP_C57BL6NJ_T0056122.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88190920 88215439 + MGP_C57BL6NJ_P0056122 Slc43a1 protein_coding protein_coding MGP_C57BL6NJ_T0056123.1 MGP_C57BL6NJ_G0026331.1 mouse_genomes_project 2 88191346 88215452 + MGP_C57BL6NJ_P0056123 Slc43a1 protein_coding protein_coding MGP_C57BL6NJ_T0056266.1 MGP_C57BL6NJ_G0026434.1 mouse_genomes_project 2 91627404 91628334 + MGP_C57BL6NJ_P0056266 protein_coding protein_coding MGP_C57BL6NJ_T0054755.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33950231 34050011 + MGP_C57BL6NJ_P0054755 Mapkap1 protein_coding protein_coding MGP_C57BL6NJ_T0054756.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33950329 33975389 + MGP_C57BL6NJ_P0054756 Mapkap1 protein_coding protein_coding MGP_C57BL6NJ_T0054757.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33950332 34029746 + Mapkap1 protein_coding processed_transcript MGP_C57BL6NJ_T0054758.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33950338 34183648 + MGP_C57BL6NJ_P0054758 Mapkap1 protein_coding protein_coding MGP_C57BL6NJ_T0054759.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33950340 34183632 + MGP_C57BL6NJ_P0054759 Mapkap1 protein_coding protein_coding MGP_C57BL6NJ_T0054760.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33982716 34088872 + Mapkap1 protein_coding processed_transcript MGP_C57BL6NJ_T0054761.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 33988569 34050168 + MGP_C57BL6NJ_P0054761 Mapkap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054762.1 MGP_C57BL6NJ_G0026056.1 mouse_genomes_project 2 34179665 34184003 + Mapkap1 protein_coding processed_transcript MGP_C57BL6NJ_T0058775.1 MGP_C57BL6NJ_G0027099.1 mouse_genomes_project 2 161823922 161824839 + MGP_C57BL6NJ_P0058775 Mcts2 protein_coding protein_coding MGP_C57BL6NJ_T0059399.1 MGP_C57BL6NJ_G0027227.1 mouse_genomes_project 2 170425724 170430161 - MGP_C57BL6NJ_P0059399 Mafb protein_coding protein_coding MGP_C57BL6NJ_T0098860.1 MGP_C57BL6NJ_G0036924.1 mouse_genomes_project 2 95466369 95466642 + pseudogene pseudogene MGP_C57BL6NJ_T0060076.1 MGP_C57BL6NJ_G0027399.1 mouse_genomes_project 2 190207941 190219101 + MGP_C57BL6NJ_P0060076 Fam217b protein_coding protein_coding MGP_C57BL6NJ_T0060077.1 MGP_C57BL6NJ_G0027399.1 mouse_genomes_project 2 190207999 190213715 + Fam217b protein_coding processed_transcript MGP_C57BL6NJ_T0054860.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34862974 34916689 + MGP_C57BL6NJ_P0054860 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054861.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34862978 34912050 + MGP_C57BL6NJ_P0054861 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054862.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34862990 34902368 + MGP_C57BL6NJ_P0054862 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054863.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34863003 34902366 + MGP_C57BL6NJ_P0054863 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054864.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34863043 34899246 + MGP_C57BL6NJ_P0054864 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054865.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34891178 34916691 + MGP_C57BL6NJ_P0054865 Gsn protein_coding protein_coding MGP_C57BL6NJ_T0054866.1 MGP_C57BL6NJ_G0026069.1 mouse_genomes_project 2 34891311 34893824 + Gsn protein_coding retained_intron MGP_C57BL6NJ_T0007586.1 MGP_C57BL6NJ_G0006221.1 mouse_genomes_project 2 180693429 180961151 - lincRNA lincRNA MGP_C57BL6NJ_T0007587.1 MGP_C57BL6NJ_G0006221.1 mouse_genomes_project 2 180693459 180961151 - lincRNA lincRNA MGP_C57BL6NJ_T0101524.1 MGP_C57BL6NJ_G0039570.1 mouse_genomes_project 2 151205652 151205768 + Gm22310 snoRNA snoRNA MGP_C57BL6NJ_T0056698.1 MGP_C57BL6NJ_G0026592.1 mouse_genomes_project 2 97607473 97649846 + MGP_C57BL6NJ_P0056698 Syt13 protein_coding protein_coding MGP_C57BL6NJ_T0053464.1 MGP_C57BL6NJ_G0025838.1 mouse_genomes_project 2 23776321 23778903 + MGP_C57BL6NJ_P0053464 Nrarp protein_coding protein_coding MGP_C57BL6NJ_T0013824.1 MGP_C57BL6NJ_G0011869.1 mouse_genomes_project 2 38281373 38281508 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060241.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182662 193184659 + MGP_C57BL6NJ_P0060241 Ppdpf protein_coding protein_coding MGP_C57BL6NJ_T0060242.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182711 193184629 + Ppdpf protein_coding retained_intron MGP_C57BL6NJ_T0060243.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182751 193184392 + MGP_C57BL6NJ_P0060243 Ppdpf protein_coding protein_coding MGP_C57BL6NJ_T0060244.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182762 193184392 + Ppdpf protein_coding retained_intron MGP_C57BL6NJ_T0060245.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182763 193183715 + MGP_C57BL6NJ_P0060245 Ppdpf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060246.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193182951 193184392 + Ppdpf protein_coding retained_intron MGP_C57BL6NJ_T0060247.1 MGP_C57BL6NJ_G0027433.1 mouse_genomes_project 2 193183801 193184392 + Ppdpf protein_coding retained_intron MGP_C57BL6NJ_T0057296.1 MGP_C57BL6NJ_G0026750.1 mouse_genomes_project 2 125759751 125764731 + MGP_C57BL6NJ_P0057296 Rpusd2 protein_coding protein_coding MGP_C57BL6NJ_T0056231.1 MGP_C57BL6NJ_G0026406.1 mouse_genomes_project 2 90849220 90850159 - MGP_C57BL6NJ_P0056231 Olfr1099 protein_coding protein_coding MGP_C57BL6NJ_T0058292.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 139965662 140021908 + MGP_C57BL6NJ_P0058292 Cds2 protein_coding protein_coding MGP_C57BL6NJ_T0058293.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 139965662 140006185 + MGP_C57BL6NJ_P0058293 Cds2 protein_coding protein_coding MGP_C57BL6NJ_T0058294.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 139965755 140007263 + MGP_C57BL6NJ_P0058294 Cds2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058295.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 139993726 140005565 + MGP_C57BL6NJ_P0058295 Cds2 protein_coding protein_coding MGP_C57BL6NJ_T0058296.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 139994489 140021908 + MGP_C57BL6NJ_P0058296 Cds2 protein_coding protein_coding MGP_C57BL6NJ_T0058297.1 MGP_C57BL6NJ_G0026962.1 mouse_genomes_project 2 140011287 140015320 + MGP_C57BL6NJ_P0058297 Cds2 protein_coding protein_coding MGP_C57BL6NJ_T0100196.1 MGP_C57BL6NJ_G0038242.1 mouse_genomes_project 2 77170862 77170969 + Gm22975 snRNA snRNA MGP_C57BL6NJ_T0057888.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371715 134400700 + Ap4e1 protein_coding retained_intron MGP_C57BL6NJ_T0057889.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371719 134376566 + Ap4e1 protein_coding retained_intron MGP_C57BL6NJ_T0057890.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371722 134408180 + MGP_C57BL6NJ_P0057890 Ap4e1 protein_coding protein_coding MGP_C57BL6NJ_T0057891.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371728 134431262 + MGP_C57BL6NJ_P0057891 Ap4e1 protein_coding protein_coding MGP_C57BL6NJ_T0057892.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371750 134391634 + MGP_C57BL6NJ_P0057892 Ap4e1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057893.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371752 134423874 + MGP_C57BL6NJ_P0057893 Ap4e1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057894.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134371752 134410497 + MGP_C57BL6NJ_P0057894 Ap4e1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057895.1 MGP_C57BL6NJ_G0026868.1 mouse_genomes_project 2 134412666 134423703 + MGP_C57BL6NJ_P0057895 Ap4e1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014063.1 MGP_C57BL6NJ_G0012108.1 mouse_genomes_project 2 125730278 125730547 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053191.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800451 16804281 + MGP_C57BL6NJ_P0053191 Commd3 protein_coding protein_coding MGP_C57BL6NJ_T0053192.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800490 16804282 + MGP_C57BL6NJ_P0053192 Commd3 protein_coding protein_coding MGP_C57BL6NJ_T0053193.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800500 16802743 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053194.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800502 16802686 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053195.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800503 16802563 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053196.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16800590 16802451 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053197.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16801708 16802448 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053198.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16802011 16803979 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053199.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16802135 16804032 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053200.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16802397 16803974 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053201.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16802474 16803057 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0053202.1 MGP_C57BL6NJ_G0025791.1 mouse_genomes_project 2 16802699 16803552 + Commd3 protein_coding processed_transcript MGP_C57BL6NJ_T0056482.1 MGP_C57BL6NJ_G0026561.1 mouse_genomes_project 2 95619995 95626218 - MGP_C57BL6NJ_P0056482 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056483.1 MGP_C57BL6NJ_G0026561.1 mouse_genomes_project 2 95620003 95624339 - MGP_C57BL6NJ_P0056483 protein_coding protein_coding MGP_C57BL6NJ_T0056484.1 MGP_C57BL6NJ_G0026561.1 mouse_genomes_project 2 95621334 95623659 - protein_coding processed_transcript MGP_C57BL6NJ_T0056485.1 MGP_C57BL6NJ_G0026561.1 mouse_genomes_project 2 95621337 95622599 - protein_coding processed_transcript MGP_C57BL6NJ_T0056486.1 MGP_C57BL6NJ_G0026561.1 mouse_genomes_project 2 95622853 95624389 - protein_coding processed_transcript MGP_C57BL6NJ_T0056201.1 MGP_C57BL6NJ_G0026379.1 mouse_genomes_project 2 89830634 89831582 - MGP_C57BL6NJ_P0056201 Olfr1045 protein_coding protein_coding MGP_C57BL6NJ_T0053326.1 MGP_C57BL6NJ_G0025815.1 mouse_genomes_project 2 21561232 21625139 + MGP_C57BL6NJ_P0053326 4931423N10Rik protein_coding protein_coding MGP_C57BL6NJ_T0053327.1 MGP_C57BL6NJ_G0025815.1 mouse_genomes_project 2 21561253 21622642 + MGP_C57BL6NJ_P0053327 4931423N10Rik protein_coding protein_coding MGP_C57BL6NJ_T0014173.1 MGP_C57BL6NJ_G0012218.1 mouse_genomes_project 2 166943375 166943735 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055360.1 MGP_C57BL6NJ_G0026178.1 mouse_genomes_project 2 61596593 61631004 - MGP_C57BL6NJ_P0055360 Cd302 protein_coding protein_coding MGP_C57BL6NJ_T0055361.1 MGP_C57BL6NJ_G0026178.1 mouse_genomes_project 2 61596593 61630934 - MGP_C57BL6NJ_P0055361 Cd302 protein_coding protein_coding MGP_C57BL6NJ_T0004178.1 MGP_C57BL6NJ_G0003708.1 mouse_genomes_project 2 86928152 86928612 - Gm13686 antisense antisense MGP_C57BL6NJ_T0013931.1 MGP_C57BL6NJ_G0011976.1 mouse_genomes_project 2 78470098 78470864 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055838.1 MGP_C57BL6NJ_G0026271.1 mouse_genomes_project 2 77262796 77279722 + Hoxd4 protein_coding processed_transcript MGP_C57BL6NJ_T0055839.1 MGP_C57BL6NJ_G0026271.1 mouse_genomes_project 2 77272831 77280014 + MGP_C57BL6NJ_P0055839 Hoxd4 protein_coding protein_coding MGP_C57BL6NJ_T0055841.1 MGP_C57BL6NJ_G0026271.1 mouse_genomes_project 2 77277927 77279977 + MGP_C57BL6NJ_P0055841 Hoxd4 protein_coding protein_coding MGP_C57BL6NJ_T0007529.1 MGP_C57BL6NJ_G0006172.1 mouse_genomes_project 2 160248250 160259365 + lincRNA lincRNA MGP_C57BL6NJ_T0100218.1 MGP_C57BL6NJ_G0038264.1 mouse_genomes_project 2 140484167 140484270 + Gm22245 snRNA snRNA MGP_C57BL6NJ_T0054221.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29343923 29365905 - MGP_C57BL6NJ_P0054221 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054222.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29343925 29365874 - Kyat1 protein_coding processed_transcript MGP_C57BL6NJ_T0054223.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29343925 29365833 - MGP_C57BL6NJ_P0054223 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054224.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29343930 29358417 - MGP_C57BL6NJ_P0054224 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054225.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29343930 29365859 - MGP_C57BL6NJ_P0054225 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054226.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29344067 29352916 - MGP_C57BL6NJ_P0054226 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054227.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29344067 29352916 - MGP_C57BL6NJ_P0054227 Kyat1 protein_coding protein_coding MGP_C57BL6NJ_T0054228.1 MGP_C57BL6NJ_G0025977.1 mouse_genomes_project 2 29349921 29365847 - Kyat1 protein_coding processed_transcript MGP_C57BL6NJ_T0018309.1 MGP_C57BL6NJ_G0015853.1 mouse_genomes_project 2 126090614 126094965 - Gm14207 processed_transcript processed_transcript MGP_C57BL6NJ_T0018310.1 MGP_C57BL6NJ_G0015853.1 mouse_genomes_project 2 126090614 126095616 - Gm14207 processed_transcript processed_transcript MGP_C57BL6NJ_T0018311.1 MGP_C57BL6NJ_G0015853.1 mouse_genomes_project 2 126090770 126094986 - Gm14207 processed_transcript processed_transcript MGP_C57BL6NJ_T0007294.1 MGP_C57BL6NJ_G0005985.1 mouse_genomes_project 2 1158836 1166786 + Gm13189 lincRNA lincRNA MGP_C57BL6NJ_T0058201.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138794903 138809249 - MGP_C57BL6NJ_P0058201 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058202.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138794904 138797608 - 1700037H04Rik protein_coding retained_intron MGP_C57BL6NJ_T0058203.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138794904 138809235 - MGP_C57BL6NJ_P0058203 1700037H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0058204.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138795373 138809239 - MGP_C57BL6NJ_P0058204 1700037H04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058205.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138795383 138809296 - MGP_C57BL6NJ_P0058205 1700037H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0058206.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138795740 138809257 - MGP_C57BL6NJ_P0058206 1700037H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0058207.1 MGP_C57BL6NJ_G0026944.1 mouse_genomes_project 2 138796860 138809257 - 1700037H04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0055207.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965219 53190972 - MGP_C57BL6NJ_P0055207 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055208.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965234 53068217 - MGP_C57BL6NJ_P0055208 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055209.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965234 53187308 - MGP_C57BL6NJ_P0055209 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055210.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965689 52986485 - Neb protein_coding processed_transcript MGP_C57BL6NJ_T0055211.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965830 53186655 - MGP_C57BL6NJ_P0055211 Neb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055212.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52965833 53007060 - MGP_C57BL6NJ_P0055212 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055213.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 52984913 52991482 - Neb protein_coding processed_transcript MGP_C57BL6NJ_T0055214.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 53004114 53006559 - Neb protein_coding processed_transcript MGP_C57BL6NJ_T0055215.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 53008491 53037002 - MGP_C57BL6NJ_P0055215 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055216.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 53066261 53104379 - MGP_C57BL6NJ_P0055216 Neb protein_coding protein_coding MGP_C57BL6NJ_T0055217.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 53171810 53187936 - Neb protein_coding processed_transcript MGP_C57BL6NJ_T0055218.1 MGP_C57BL6NJ_G0026150.1 mouse_genomes_project 2 53181012 53190972 - Neb protein_coding processed_transcript MGP_C57BL6NJ_T0058998.1 MGP_C57BL6NJ_G0027159.1 mouse_genomes_project 2 165019751 165045541 - MGP_C57BL6NJ_P0058998 Ggt7 protein_coding protein_coding MGP_C57BL6NJ_T0058999.1 MGP_C57BL6NJ_G0027159.1 mouse_genomes_project 2 165024256 165028532 - Ggt7 protein_coding retained_intron MGP_C57BL6NJ_T0059000.1 MGP_C57BL6NJ_G0027159.1 mouse_genomes_project 2 165025325 165033830 - Ggt7 protein_coding retained_intron MGP_C57BL6NJ_T0059001.1 MGP_C57BL6NJ_G0027159.1 mouse_genomes_project 2 165030137 165037647 - MGP_C57BL6NJ_P0059001 Ggt7 protein_coding protein_coding MGP_C57BL6NJ_T0059002.1 MGP_C57BL6NJ_G0027159.1 mouse_genomes_project 2 165035467 165049016 - MGP_C57BL6NJ_P0059002 Ggt7 protein_coding protein_coding MGP_C57BL6NJ_T0013927.1 MGP_C57BL6NJ_G0011972.1 mouse_genomes_project 2 76485477 76486478 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103042.1 MGP_C57BL6NJ_G0040836.1 mouse_genomes_project 2 94466694 94467624 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0052823.1 MGP_C57BL6NJ_G0025731.1 mouse_genomes_project 2 1972878 2006434 + MGP_C57BL6NJ_P0052823 Sephs1 protein_coding protein_coding MGP_C57BL6NJ_T0052824.1 MGP_C57BL6NJ_G0025731.1 mouse_genomes_project 2 1973551 2004014 + MGP_C57BL6NJ_P0052824 Sephs1 protein_coding protein_coding MGP_C57BL6NJ_T0052825.1 MGP_C57BL6NJ_G0025731.1 mouse_genomes_project 2 1975363 1980436 + Sephs1 protein_coding processed_transcript MGP_C57BL6NJ_T0052826.1 MGP_C57BL6NJ_G0025731.1 mouse_genomes_project 2 1975690 2001410 + Sephs1 protein_coding processed_transcript MGP_C57BL6NJ_T0056180.1 MGP_C57BL6NJ_G0026359.1 mouse_genomes_project 2 89330391 89331324 - MGP_C57BL6NJ_P0056180 Olfr1019 protein_coding protein_coding MGP_C57BL6NJ_T0101466.1 MGP_C57BL6NJ_G0039512.1 mouse_genomes_project 2 20175271 20175394 - Gm24886 snoRNA snoRNA MGP_C57BL6NJ_T0053819.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25195420 25242250 - MGP_C57BL6NJ_P0053819 Notch1 protein_coding protein_coding MGP_C57BL6NJ_T0053820.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25199735 25200265 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053821.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25202988 25205131 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053822.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25202988 25204172 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053823.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25202988 25203885 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053824.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25202988 25204312 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053825.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25202988 25203681 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053826.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25206060 25207267 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053827.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25207342 25208016 - Notch1 protein_coding processed_transcript MGP_C57BL6NJ_T0053828.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25208793 25267769 - MGP_C57BL6NJ_P0053828 Notch1 protein_coding protein_coding MGP_C57BL6NJ_T0053829.1 MGP_C57BL6NJ_G0025907.1 mouse_genomes_project 2 25236582 25242252 - Notch1 protein_coding retained_intron MGP_C57BL6NJ_T0053571.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24032918 24039886 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053572.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24034036 24041724 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053573.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036628 24044228 + MGP_C57BL6NJ_P0053573 Npdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053574.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036664 24040394 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053575.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036726 24041393 + MGP_C57BL6NJ_P0053575 Npdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053576.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036728 24044228 + MGP_C57BL6NJ_P0053576 Npdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053577.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036751 24041861 + MGP_C57BL6NJ_P0053577 Npdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053578.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24036796 24040657 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053579.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24037005 24041549 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053580.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24037630 24044225 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053581.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24039852 24044228 + MGP_C57BL6NJ_P0053581 Npdc1 protein_coding protein_coding MGP_C57BL6NJ_T0053582.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24040827 24043990 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053583.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24041237 24044222 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053584.1 MGP_C57BL6NJ_G0025861.1 mouse_genomes_project 2 24043606 24044225 + Npdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0053859.1 MGP_C57BL6NJ_G0025913.1 mouse_genomes_project 2 25629604 25647140 - MGP_C57BL6NJ_P0053859 Abo protein_coding protein_coding MGP_C57BL6NJ_T0053860.1 MGP_C57BL6NJ_G0025913.1 mouse_genomes_project 2 25629604 25667243 - MGP_C57BL6NJ_P0053860 Abo protein_coding protein_coding MGP_C57BL6NJ_T0013959.1 MGP_C57BL6NJ_G0012004.1 mouse_genomes_project 2 86974860 86976113 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013956.1 MGP_C57BL6NJ_G0012001.1 mouse_genomes_project 2 86615608 86616310 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058313.1 MGP_C57BL6NJ_G0026965.1 mouse_genomes_project 2 140435733 140520688 + MGP_C57BL6NJ_P0058313 1110034G24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058314.1 MGP_C57BL6NJ_G0026965.1 mouse_genomes_project 2 140438959 140520136 + MGP_C57BL6NJ_P0058314 1110034G24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058315.1 MGP_C57BL6NJ_G0026965.1 mouse_genomes_project 2 140439085 140520688 + MGP_C57BL6NJ_P0058315 1110034G24Rik protein_coding protein_coding MGP_C57BL6NJ_T0058316.1 MGP_C57BL6NJ_G0026965.1 mouse_genomes_project 2 140462445 140520215 + 1110034G24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0057541.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127787259 127914405 - MGP_C57BL6NJ_P0057541 Ubr1 protein_coding protein_coding MGP_C57BL6NJ_T0057542.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127789563 127799113 - Ubr1 protein_coding processed_transcript MGP_C57BL6NJ_T0057543.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127800636 127819268 - Ubr1 protein_coding processed_transcript MGP_C57BL6NJ_T0057544.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127831012 127848598 - Ubr1 protein_coding processed_transcript MGP_C57BL6NJ_T0057545.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127857426 127867019 - Ubr1 protein_coding processed_transcript MGP_C57BL6NJ_T0057546.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127884499 127914303 - Ubr1 protein_coding retained_intron MGP_C57BL6NJ_T0057547.1 MGP_C57BL6NJ_G0026796.1 mouse_genomes_project 2 127905797 127914382 - Ubr1 protein_coding retained_intron MGP_C57BL6NJ_T0058469.1 MGP_C57BL6NJ_G0027003.1 mouse_genomes_project 2 152803015 152811763 + MGP_C57BL6NJ_P0058469 Mgme1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053976.1 MGP_C57BL6NJ_G0025935.1 mouse_genomes_project 2 26988202 26996710 - MGP_C57BL6NJ_P0053976 Fcnb protein_coding protein_coding MGP_C57BL6NJ_T0053977.1 MGP_C57BL6NJ_G0025935.1 mouse_genomes_project 2 26989923 26996710 - MGP_C57BL6NJ_P0053977 Fcnb protein_coding protein_coding MGP_C57BL6NJ_T0053978.1 MGP_C57BL6NJ_G0025935.1 mouse_genomes_project 2 26991563 26996710 - MGP_C57BL6NJ_P0053978 Fcnb protein_coding protein_coding MGP_C57BL6NJ_T0059776.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177229494 177387951 - MGP_C57BL6NJ_P0059776 Prex1 protein_coding protein_coding MGP_C57BL6NJ_T0059777.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177230112 177305498 - MGP_C57BL6NJ_P0059777 Prex1 protein_coding protein_coding MGP_C57BL6NJ_T0059778.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177230118 177245281 - MGP_C57BL6NJ_P0059778 Prex1 protein_coding protein_coding MGP_C57BL6NJ_T0059779.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177231469 177236130 - Prex1 protein_coding processed_transcript MGP_C57BL6NJ_T0059780.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177264983 177268393 - Prex1 protein_coding retained_intron MGP_C57BL6NJ_T0059781.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177299952 177375766 - Prex1 protein_coding processed_transcript MGP_C57BL6NJ_T0059782.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177310908 177387910 - Prex1 protein_coding retained_intron MGP_C57BL6NJ_T0059783.1 MGP_C57BL6NJ_G0027324.1 mouse_genomes_project 2 177311121 177387721 - Prex1 protein_coding retained_intron MGP_C57BL6NJ_T0054570.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31825142 31862820 - MGP_C57BL6NJ_P0054570 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054571.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31825142 31841780 - MGP_C57BL6NJ_P0054571 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054572.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31825145 31862843 - MGP_C57BL6NJ_P0054572 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054573.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31825625 31841413 - MGP_C57BL6NJ_P0054573 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054574.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31825715 31834661 - MGP_C57BL6NJ_P0054574 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054575.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31826864 31827227 - Slc25a25 protein_coding retained_intron MGP_C57BL6NJ_T0054576.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31827747 31831106 - Slc25a25 protein_coding retained_intron MGP_C57BL6NJ_T0054577.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31827827 31828486 - Slc25a25 protein_coding retained_intron MGP_C57BL6NJ_T0054578.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31828073 31841766 - MGP_C57BL6NJ_P0054578 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054579.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31829703 31832636 - MGP_C57BL6NJ_P0054579 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054580.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31829785 31841765 - MGP_C57BL6NJ_P0054580 Slc25a25 protein_coding protein_coding MGP_C57BL6NJ_T0054581.1 MGP_C57BL6NJ_G0026025.1 mouse_genomes_project 2 31838009 31841830 - Slc25a25 protein_coding retained_intron MGP_C57BL6NJ_T0101520.1 MGP_C57BL6NJ_G0039566.1 mouse_genomes_project 2 137866463 137866596 + Gm24451 snoRNA snoRNA MGP_C57BL6NJ_T0059547.1 MGP_C57BL6NJ_G0027267.1 mouse_genomes_project 2 174612753 174615261 - MGP_C57BL6NJ_P0059547 Svs4 protein_coding protein_coding MGP_C57BL6NJ_T0059685.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521506 175530401 + MGP_C57BL6NJ_P0059685 Cd40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059686.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521506 175545135 + MGP_C57BL6NJ_P0059686 Cd40 protein_coding protein_coding MGP_C57BL6NJ_T0059687.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521515 175543841 + MGP_C57BL6NJ_P0059687 Cd40 protein_coding protein_coding MGP_C57BL6NJ_T0059688.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521559 175542932 + MGP_C57BL6NJ_P0059688 Cd40 protein_coding protein_coding MGP_C57BL6NJ_T0059689.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521560 175530458 + MGP_C57BL6NJ_P0059689 Cd40 protein_coding protein_coding MGP_C57BL6NJ_T0059690.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175521583 175543187 + MGP_C57BL6NJ_P0059690 Cd40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059691.1 MGP_C57BL6NJ_G0027309.1 mouse_genomes_project 2 175530353 175534357 + Cd40 protein_coding retained_intron MGP_C57BL6NJ_T0014108.1 MGP_C57BL6NJ_G0012153.1 mouse_genomes_project 2 147559199 147559708 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103031.1 MGP_C57BL6NJ_G0040825.1 mouse_genomes_project 2 91873778 91874223 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010681.1 MGP_C57BL6NJ_G0008766.1 mouse_genomes_project 2 126883830 126883893 + Mir7665 miRNA miRNA MGP_C57BL6NJ_T0011760.1 MGP_C57BL6NJ_G0009845.1 mouse_genomes_project 2 45694900 45695101 + Vis1 misc_RNA misc_RNA MGP_C57BL6NJ_T0057112.1 MGP_C57BL6NJ_G0026695.1 mouse_genomes_project 2 118101212 118102151 - MGP_C57BL6NJ_P0057112 Olfr1305 protein_coding protein_coding MGP_C57BL6NJ_T0011749.1 MGP_C57BL6NJ_G0009834.1 mouse_genomes_project 2 10996854 10997041 + Gm27540 misc_RNA misc_RNA MGP_C57BL6NJ_T0056299.1 MGP_C57BL6NJ_G0026464.1 mouse_genomes_project 2 92183353 92184220 - MGP_C57BL6NJ_P0056299 Olfr1166 protein_coding protein_coding MGP_C57BL6NJ_T0053901.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25768803 25781326 - MGP_C57BL6NJ_P0053901 Rexo4 protein_coding protein_coding MGP_C57BL6NJ_T0053902.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25768806 25781326 - MGP_C57BL6NJ_P0053902 Rexo4 protein_coding protein_coding MGP_C57BL6NJ_T0053903.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25770177 25772438 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0053904.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25770279 25771536 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0053905.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25770392 25781219 - MGP_C57BL6NJ_P0053905 Rexo4 protein_coding protein_coding MGP_C57BL6NJ_T0053906.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25770852 25772171 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0053907.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25772184 25781218 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0053908.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25773887 25777206 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0053909.1 MGP_C57BL6NJ_G0025921.1 mouse_genomes_project 2 25779818 25781264 - Rexo4 protein_coding processed_transcript MGP_C57BL6NJ_T0059634.1 MGP_C57BL6NJ_G0027301.1 mouse_genomes_project 2 175269769 175272494 - MGP_C57BL6NJ_P0059634 Neurl2 protein_coding protein_coding MGP_C57BL6NJ_T0013861.1 MGP_C57BL6NJ_G0011906.1 mouse_genomes_project 2 52608925 52609590 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059734.1 MGP_C57BL6NJ_G0027318.1 mouse_genomes_project 2 176003579 176009741 - MGP_C57BL6NJ_P0059734 Trp53rka protein_coding protein_coding MGP_C57BL6NJ_T0059735.1 MGP_C57BL6NJ_G0027318.1 mouse_genomes_project 2 176004647 176009533 - Trp53rka protein_coding processed_transcript MGP_C57BL6NJ_T0014130.1 MGP_C57BL6NJ_G0012175.1 mouse_genomes_project 2 154925304 154926065 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058102.1 MGP_C57BL6NJ_G0026922.1 mouse_genomes_project 2 138004552 138007567 + MGP_C57BL6NJ_P0058102 Gm28372 protein_coding protein_coding MGP_C57BL6NJ_T0058629.1 MGP_C57BL6NJ_G0027051.1 mouse_genomes_project 2 159551641 159560220 + MGP_C57BL6NJ_P0058629 Cst7 protein_coding protein_coding MGP_C57BL6NJ_T0004327.1 MGP_C57BL6NJ_G0003817.1 mouse_genomes_project 2 183649744 183668727 + Gm14273 antisense antisense MGP_C57BL6NJ_T0055531.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70156102 70438299 - MGP_C57BL6NJ_P0055531 Stk39 protein_coding protein_coding MGP_C57BL6NJ_T0055532.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70156105 70323608 - Stk39 protein_coding retained_intron MGP_C57BL6NJ_T0055533.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70157397 70170589 - Stk39 protein_coding processed_transcript MGP_C57BL6NJ_T0055534.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70157397 70200385 - Stk39 protein_coding processed_transcript MGP_C57BL6NJ_T0055535.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70157397 70200390 - Stk39 protein_coding processed_transcript MGP_C57BL6NJ_T0055536.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70157404 70200363 - Stk39 protein_coding processed_transcript MGP_C57BL6NJ_T0055537.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70213521 70437971 - Stk39 protein_coding retained_intron MGP_C57BL6NJ_T0055538.1 MGP_C57BL6NJ_G0026209.1 mouse_genomes_project 2 70315995 70343626 - Stk39 protein_coding processed_transcript MGP_C57BL6NJ_T0013978.1 MGP_C57BL6NJ_G0012023.1 mouse_genomes_project 2 91547811 91548661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053024.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9458732 9459716 + MGP_C57BL6NJ_P0053024 Ankrd16 protein_coding protein_coding MGP_C57BL6NJ_T0053025.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9459347 9477171 + MGP_C57BL6NJ_P0053025 Ankrd16 protein_coding protein_coding MGP_C57BL6NJ_T0053026.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9459380 9477175 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053027.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9459383 9477149 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053028.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9459420 9477171 + MGP_C57BL6NJ_P0053028 Ankrd16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053029.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9459428 9462121 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053030.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9460741 9476614 + MGP_C57BL6NJ_P0053030 Ankrd16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053031.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9464145 9477166 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053032.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9464165 9476760 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053033.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9465061 9477147 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0053034.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9466735 9477142 + MGP_C57BL6NJ_P0053034 Ankrd16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053035.1 MGP_C57BL6NJ_G0025764.1 mouse_genomes_project 2 9468600 9476968 + Ankrd16 protein_coding retained_intron MGP_C57BL6NJ_T0052827.1 MGP_C57BL6NJ_G0025732.1 mouse_genomes_project 2 2014887 2038192 + MGP_C57BL6NJ_P0052827 Phyh protein_coding protein_coding MGP_C57BL6NJ_T0052828.1 MGP_C57BL6NJ_G0025732.1 mouse_genomes_project 2 2014948 2025269 + Phyh protein_coding processed_transcript MGP_C57BL6NJ_T0052829.1 MGP_C57BL6NJ_G0025732.1 mouse_genomes_project 2 2036944 2037805 + Phyh protein_coding processed_transcript MGP_C57BL6NJ_T0010598.1 MGP_C57BL6NJ_G0008683.1 mouse_genomes_project 2 8072010 8072131 + Mir466l miRNA miRNA MGP_C57BL6NJ_T0014084.1 MGP_C57BL6NJ_G0012129.1 mouse_genomes_project 2 136076253 136076463 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055893.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79386140 79680501 - MGP_C57BL6NJ_P0055893 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055894.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79386140 79680501 - MGP_C57BL6NJ_P0055894 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055895.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79386144 79680593 - MGP_C57BL6NJ_P0055895 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055896.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79387191 79678229 - MGP_C57BL6NJ_P0055896 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055897.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79387191 79678229 - MGP_C57BL6NJ_P0055897 Ttn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055898.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501241 79630443 - MGP_C57BL6NJ_P0055898 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055899.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501749 79584063 - MGP_C57BL6NJ_P0055899 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055900.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501783 79561318 - MGP_C57BL6NJ_P0055900 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055901.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501784 79561318 - MGP_C57BL6NJ_P0055901 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055902.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501784 79561318 - MGP_C57BL6NJ_P0055902 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055903.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501784 79561318 - MGP_C57BL6NJ_P0055903 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055904.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79501802 79561318 - MGP_C57BL6NJ_P0055904 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055905.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79508859 79519372 - MGP_C57BL6NJ_P0055905 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055906.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79514505 79515429 - MGP_C57BL6NJ_P0055906 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055907.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79515280 79516236 - MGP_C57BL6NJ_P0055907 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055908.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79528908 79529758 - MGP_C57BL6NJ_P0055908 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055909.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79528908 79531840 - MGP_C57BL6NJ_P0055909 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055910.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79537172 79540112 - MGP_C57BL6NJ_P0055910 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055911.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79542212 79564749 - MGP_C57BL6NJ_P0055911 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055912.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79582888 79583645 - Ttn protein_coding processed_transcript MGP_C57BL6NJ_T0055913.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79611405 79680501 - MGP_C57BL6NJ_P0055913 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055914.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79634126 79636727 - Ttn protein_coding retained_intron MGP_C57BL6NJ_T0055915.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79657361 79680593 - Ttn protein_coding retained_intron MGP_C57BL6NJ_T0055916.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79658167 79680593 - MGP_C57BL6NJ_P0055916 Ttn protein_coding protein_coding MGP_C57BL6NJ_T0055917.1 MGP_C57BL6NJ_G0026289.1 mouse_genomes_project 2 79666128 79680593 - Ttn protein_coding retained_intron MGP_C57BL6NJ_T0018232.1 MGP_C57BL6NJ_G0015808.1 mouse_genomes_project 2 35865588 35867534 + Gm13429 processed_transcript processed_transcript MGP_C57BL6NJ_T0018233.1 MGP_C57BL6NJ_G0015808.1 mouse_genomes_project 2 35866096 35876178 + Gm13429 processed_transcript processed_transcript MGP_C57BL6NJ_T0018234.1 MGP_C57BL6NJ_G0015808.1 mouse_genomes_project 2 35874046 35876177 + Gm13429 processed_transcript processed_transcript MGP_C57BL6NJ_T0007555.1 MGP_C57BL6NJ_G0006195.1 mouse_genomes_project 2 176132338 176132663 - Gm28163 lincRNA lincRNA MGP_C57BL6NJ_T0055362.1 MGP_C57BL6NJ_G0026179.1 mouse_genomes_project 2 61638616 61735869 - MGP_C57BL6NJ_P0055362 Ly75 protein_coding protein_coding MGP_C57BL6NJ_T0055363.1 MGP_C57BL6NJ_G0026179.1 mouse_genomes_project 2 61640273 61735797 - MGP_C57BL6NJ_P0055363 Ly75 protein_coding protein_coding MGP_C57BL6NJ_T0056150.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88411089 88415202 + Tnks1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056151.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88411122 88436088 + Tnks1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056152.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88411163 88436094 + MGP_C57BL6NJ_P0056152 Tnks1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0056153.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88413527 88415120 + Tnks1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056154.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88413527 88436092 + MGP_C57BL6NJ_P0056154 Tnks1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0056155.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88413675 88436082 + Tnks1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0056156.1 MGP_C57BL6NJ_G0026338.1 mouse_genomes_project 2 88413960 88421603 + Tnks1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0013906.1 MGP_C57BL6NJ_G0011951.1 mouse_genomes_project 2 68783969 68784462 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004242.1 MGP_C57BL6NJ_G0003752.1 mouse_genomes_project 2 139953164 139963848 + AV099323 antisense antisense MGP_C57BL6NJ_T0014139.1 MGP_C57BL6NJ_G0012184.1 mouse_genomes_project 2 158218926 158220645 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058217.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138856331 138861947 + Ap5s1 protein_coding processed_transcript MGP_C57BL6NJ_T0058218.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138856339 138864373 + MGP_C57BL6NJ_P0058218 Ap5s1 protein_coding protein_coding MGP_C57BL6NJ_T0058219.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138860869 138864639 + Ap5s1 protein_coding processed_transcript MGP_C57BL6NJ_T0058220.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138860896 138864231 + Ap5s1 protein_coding processed_transcript MGP_C57BL6NJ_T0058221.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138860923 138865148 + MGP_C57BL6NJ_P0058221 Ap5s1 protein_coding protein_coding MGP_C57BL6NJ_T0058222.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138860939 138865151 + MGP_C57BL6NJ_P0058222 Ap5s1 protein_coding protein_coding MGP_C57BL6NJ_T0058223.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138860939 138865151 + MGP_C57BL6NJ_P0058223 Ap5s1 protein_coding protein_coding MGP_C57BL6NJ_T0058224.1 MGP_C57BL6NJ_G0026948.1 mouse_genomes_project 2 138861103 138864501 + MGP_C57BL6NJ_P0058224 Ap5s1 protein_coding protein_coding MGP_C57BL6NJ_T0013862.1 MGP_C57BL6NJ_G0011907.1 mouse_genomes_project 2 52740498 52741035 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099376.1 MGP_C57BL6NJ_G0037434.1 mouse_genomes_project 2 153914302 153962154 + Gm14093 sense_intronic sense_intronic MGP_C57BL6NJ_T0010687.1 MGP_C57BL6NJ_G0008772.1 mouse_genomes_project 2 134403916 134404041 + Gm24081 miRNA miRNA MGP_C57BL6NJ_T0010572.1 MGP_C57BL6NJ_G0008657.1 mouse_genomes_project 2 8043973 8044100 + Gm26073 miRNA miRNA MGP_C57BL6NJ_T0060187.1 MGP_C57BL6NJ_G0027426.1 mouse_genomes_project 2 192920284 192925269 + Birc7 protein_coding retained_intron MGP_C57BL6NJ_T0060188.1 MGP_C57BL6NJ_G0027426.1 mouse_genomes_project 2 192920284 192925272 + MGP_C57BL6NJ_P0060188 Birc7 protein_coding protein_coding MGP_C57BL6NJ_T0059443.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 171684961 172873501 - MGP_C57BL6NJ_P0059443 Ptprt protein_coding protein_coding MGP_C57BL6NJ_T0059444.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 171684961 172873501 - MGP_C57BL6NJ_P0059444 Ptprt protein_coding protein_coding MGP_C57BL6NJ_T0059445.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 171689328 172873448 - MGP_C57BL6NJ_P0059445 Ptprt protein_coding protein_coding MGP_C57BL6NJ_T0059446.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 171690480 172873501 - MGP_C57BL6NJ_P0059446 Ptprt protein_coding protein_coding MGP_C57BL6NJ_T0059447.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 171866749 171975502 - Ptprt protein_coding processed_transcript MGP_C57BL6NJ_T0059448.1 MGP_C57BL6NJ_G0027235.1 mouse_genomes_project 2 172203097 172329371 - Ptprt protein_coding processed_transcript MGP_C57BL6NJ_T0057454.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127232951 127282604 - MGP_C57BL6NJ_P0057454 Tmem87a protein_coding protein_coding MGP_C57BL6NJ_T0057455.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127232951 127282624 - MGP_C57BL6NJ_P0057455 Tmem87a protein_coding protein_coding MGP_C57BL6NJ_T0057456.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127232955 127282630 - Tmem87a protein_coding processed_transcript MGP_C57BL6NJ_T0057457.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127233605 127282612 - Tmem87a protein_coding processed_transcript MGP_C57BL6NJ_T0057458.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127240926 127282613 - MGP_C57BL6NJ_P0057458 Tmem87a protein_coding protein_coding MGP_C57BL6NJ_T0057459.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127259326 127282648 - Tmem87a protein_coding processed_transcript MGP_C57BL6NJ_T0057460.1 MGP_C57BL6NJ_G0026786.1 mouse_genomes_project 2 127259840 127282616 - Tmem87a protein_coding retained_intron MGP_C57BL6NJ_T0059951.1 MGP_C57BL6NJ_G0027360.1 mouse_genomes_project 2 181735301 181762688 - MGP_C57BL6NJ_P0059951 4930470P17Rik protein_coding protein_coding MGP_C57BL6NJ_T0054348.1 MGP_C57BL6NJ_G0025995.1 mouse_genomes_project 2 30126509 30141406 - MGP_C57BL6NJ_P0054348 Ptges protein_coding protein_coding MGP_C57BL6NJ_T0054349.1 MGP_C57BL6NJ_G0025995.1 mouse_genomes_project 2 30130396 30139902 - Ptges protein_coding processed_transcript MGP_C57BL6NJ_T0054350.1 MGP_C57BL6NJ_G0025995.1 mouse_genomes_project 2 30130409 30170297 - Ptges protein_coding processed_transcript MGP_C57BL6NJ_T0054351.1 MGP_C57BL6NJ_G0025995.1 mouse_genomes_project 2 30130601 30135583 - Ptges protein_coding processed_transcript MGP_C57BL6NJ_T0058761.1 MGP_C57BL6NJ_G0027092.1 mouse_genomes_project 2 161704667 161706868 + MGP_C57BL6NJ_P0058761 Defb21 protein_coding protein_coding MGP_C57BL6NJ_T0060261.1 MGP_C57BL6NJ_G0027439.1 mouse_genomes_project 2 193316740 193327228 - MGP_C57BL6NJ_P0060261 Stmn3 protein_coding protein_coding MGP_C57BL6NJ_T0055524.1 MGP_C57BL6NJ_G0026206.1 mouse_genomes_project 2 69302911 69303277 - MGP_C57BL6NJ_P0055524 Gm26727 protein_coding protein_coding MGP_C57BL6NJ_T0007466.1 MGP_C57BL6NJ_G0006123.1 mouse_genomes_project 2 121790634 121793218 + Gm13976 lincRNA lincRNA MGP_C57BL6NJ_T0059358.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359754 168458106 + MGP_C57BL6NJ_P0059358 Ralgapb protein_coding protein_coding MGP_C57BL6NJ_T0059359.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359759 168458106 + MGP_C57BL6NJ_P0059359 Ralgapb protein_coding protein_coding MGP_C57BL6NJ_T0059360.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359782 168377956 + Ralgapb protein_coding retained_intron MGP_C57BL6NJ_T0059361.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359785 168389523 + Ralgapb protein_coding retained_intron MGP_C57BL6NJ_T0059362.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359788 168393175 + Ralgapb protein_coding processed_transcript MGP_C57BL6NJ_T0059363.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168359857 168456499 + MGP_C57BL6NJ_P0059363 Ralgapb protein_coding protein_coding MGP_C57BL6NJ_T0059364.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168360008 168370804 + MGP_C57BL6NJ_P0059364 Ralgapb protein_coding protein_coding MGP_C57BL6NJ_T0059365.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168386430 168458106 + MGP_C57BL6NJ_P0059365 Ralgapb protein_coding protein_coding MGP_C57BL6NJ_T0059366.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168417101 168430077 + Ralgapb protein_coding retained_intron MGP_C57BL6NJ_T0059367.1 MGP_C57BL6NJ_G0027218.1 mouse_genomes_project 2 168434400 168441371 + Ralgapb protein_coding processed_transcript MGP_C57BL6NJ_T0053373.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23147518 23316279 - MGP_C57BL6NJ_P0053373 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053374.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23147525 23316256 - MGP_C57BL6NJ_P0053374 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053375.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23150006 23316174 - MGP_C57BL6NJ_P0053375 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053376.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23150010 23151166 - MGP_C57BL6NJ_P0053376 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053377.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23150201 23316174 - MGP_C57BL6NJ_P0053377 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053378.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23150201 23316174 - MGP_C57BL6NJ_P0053378 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053379.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23151622 23161953 - MGP_C57BL6NJ_P0053379 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053380.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23153563 23181749 - MGP_C57BL6NJ_P0053380 Cacna1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053381.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23166285 23175711 - MGP_C57BL6NJ_P0053381 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0053382.1 MGP_C57BL6NJ_G0025828.1 mouse_genomes_project 2 23226679 23233048 - MGP_C57BL6NJ_P0053382 Cacna1b protein_coding protein_coding MGP_C57BL6NJ_T0007572.1 MGP_C57BL6NJ_G0006208.1 mouse_genomes_project 2 178664391 178670147 - 1200007C13Rik lincRNA lincRNA MGP_C57BL6NJ_T0013998.1 MGP_C57BL6NJ_G0012043.1 mouse_genomes_project 2 99175201 99175798 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056173.1 MGP_C57BL6NJ_G0026352.1 mouse_genomes_project 2 89196690 89197635 + MGP_C57BL6NJ_P0056173 Olfr1009 protein_coding protein_coding MGP_C57BL6NJ_T0059463.1 MGP_C57BL6NJ_G0027239.1 mouse_genomes_project 2 173254166 173283471 + MGP_C57BL6NJ_P0059463 Ift52 protein_coding protein_coding MGP_C57BL6NJ_T0059464.1 MGP_C57BL6NJ_G0027239.1 mouse_genomes_project 2 173254303 173269210 + MGP_C57BL6NJ_P0059464 Ift52 protein_coding protein_coding MGP_C57BL6NJ_T0059465.1 MGP_C57BL6NJ_G0027239.1 mouse_genomes_project 2 173254331 173260947 + Ift52 protein_coding processed_transcript MGP_C57BL6NJ_T0059466.1 MGP_C57BL6NJ_G0027239.1 mouse_genomes_project 2 173259848 173266369 + Ift52 protein_coding processed_transcript MGP_C57BL6NJ_T0055388.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63036658 63116077 + MGP_C57BL6NJ_P0055388 Tank protein_coding protein_coding MGP_C57BL6NJ_T0055389.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63036659 63116077 + MGP_C57BL6NJ_P0055389 Tank protein_coding protein_coding MGP_C57BL6NJ_T0055390.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63036684 63115996 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0055391.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63036684 63105813 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0055392.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63055258 63116077 + MGP_C57BL6NJ_P0055392 Tank protein_coding protein_coding MGP_C57BL6NJ_T0055393.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63055278 63116077 + MGP_C57BL6NJ_P0055393 Tank protein_coding protein_coding MGP_C57BL6NJ_T0055394.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63055317 63113705 + MGP_C57BL6NJ_P0055394 Tank protein_coding protein_coding MGP_C57BL6NJ_T0055395.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63055345 63078770 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0055396.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63055346 63115996 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0055397.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63089646 63108096 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0055398.1 MGP_C57BL6NJ_G0026183.1 mouse_genomes_project 2 63105736 63111883 + Tank protein_coding processed_transcript MGP_C57BL6NJ_T0007331.1 MGP_C57BL6NJ_G0006013.1 mouse_genomes_project 2 24858360 24862056 - C330006A16Rik lincRNA lincRNA MGP_C57BL6NJ_T0007332.1 MGP_C57BL6NJ_G0006013.1 mouse_genomes_project 2 24859917 24860337 - C330006A16Rik lincRNA lincRNA MGP_C57BL6NJ_T0014122.1 MGP_C57BL6NJ_G0012167.1 mouse_genomes_project 2 152387691 152388024 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060196.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961330 192976554 + MGP_C57BL6NJ_P0060196 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060197.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961339 192976622 + MGP_C57BL6NJ_P0060197 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060198.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961350 192975796 + MGP_C57BL6NJ_P0060198 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060199.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961370 192976556 + Arfgap1 protein_coding retained_intron MGP_C57BL6NJ_T0060200.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961372 192976542 + Arfgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0060201.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961382 192976556 + MGP_C57BL6NJ_P0060201 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060202.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961384 192967026 + Arfgap1 protein_coding retained_intron MGP_C57BL6NJ_T0060203.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192961405 192976407 + MGP_C57BL6NJ_P0060203 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060204.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192965136 192975569 + MGP_C57BL6NJ_P0060204 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060205.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192965151 192975466 + MGP_C57BL6NJ_P0060205 Arfgap1 protein_coding protein_coding MGP_C57BL6NJ_T0060206.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192967582 192970848 + Arfgap1 protein_coding retained_intron MGP_C57BL6NJ_T0060207.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192967599 192972138 + Arfgap1 protein_coding retained_intron MGP_C57BL6NJ_T0060208.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192967927 192971620 + Arfgap1 protein_coding retained_intron MGP_C57BL6NJ_T0060209.1 MGP_C57BL6NJ_G0027428.1 mouse_genomes_project 2 192974444 192975493 + Arfgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0004055.1 MGP_C57BL6NJ_G0003616.1 mouse_genomes_project 2 15564066 15565005 + Gm13324 antisense antisense MGP_C57BL6NJ_T0013937.1 MGP_C57BL6NJ_G0011982.1 mouse_genomes_project 2 81402429 81416815 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058137.1 MGP_C57BL6NJ_G0026934.1 mouse_genomes_project 2 138272329 138282867 - MGP_C57BL6NJ_P0058137 Ddrgk1 protein_coding protein_coding MGP_C57BL6NJ_T0058138.1 MGP_C57BL6NJ_G0026934.1 mouse_genomes_project 2 138272336 138273079 - Ddrgk1 protein_coding retained_intron MGP_C57BL6NJ_T0058139.1 MGP_C57BL6NJ_G0026934.1 mouse_genomes_project 2 138272496 138275659 - Ddrgk1 protein_coding processed_transcript MGP_C57BL6NJ_T0058140.1 MGP_C57BL6NJ_G0026934.1 mouse_genomes_project 2 138272592 138280043 - MGP_C57BL6NJ_P0058140 Ddrgk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058141.1 MGP_C57BL6NJ_G0026934.1 mouse_genomes_project 2 138273500 138282121 - Ddrgk1 protein_coding processed_transcript MGP_C57BL6NJ_T0001189.1 MGP_C57BL6NJ_G0001095.1 mouse_genomes_project 2 22708817 22710601 + TEC TEC MGP_C57BL6NJ_T0052965.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119226 9210529 - MGP_C57BL6NJ_P0052965 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052966.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119584 9152219 - MGP_C57BL6NJ_P0052966 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052967.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119617 9152219 - MGP_C57BL6NJ_P0052967 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052968.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119619 9152219 - MGP_C57BL6NJ_P0052968 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052969.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119619 9210374 - MGP_C57BL6NJ_P0052969 Pfkfb3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052970.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9119621 9148513 - Pfkfb3 protein_coding processed_transcript MGP_C57BL6NJ_T0052971.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9122200 9152219 - MGP_C57BL6NJ_P0052971 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052972.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9122200 9151818 - MGP_C57BL6NJ_P0052972 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052973.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9122200 9152219 - MGP_C57BL6NJ_P0052973 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052974.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9122200 9152219 - MGP_C57BL6NJ_P0052974 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052975.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9123557 9152208 - MGP_C57BL6NJ_P0052975 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052976.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9123557 9152208 - MGP_C57BL6NJ_P0052976 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052977.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9125748 9152219 - MGP_C57BL6NJ_P0052977 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052978.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9125760 9152219 - MGP_C57BL6NJ_P0052978 Pfkfb3 protein_coding protein_coding MGP_C57BL6NJ_T0052979.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9130032 9152193 - Pfkfb3 protein_coding retained_intron MGP_C57BL6NJ_T0052980.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9131142 9132244 - Pfkfb3 protein_coding retained_intron MGP_C57BL6NJ_T0052981.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9140479 9152135 - Pfkfb3 protein_coding processed_transcript MGP_C57BL6NJ_T0052982.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9142442 9151915 - Pfkfb3 protein_coding retained_intron MGP_C57BL6NJ_T0052983.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9142742 9148479 - Pfkfb3 protein_coding processed_transcript MGP_C57BL6NJ_T0052984.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9142769 9151414 - Pfkfb3 protein_coding retained_intron MGP_C57BL6NJ_T0052985.1 MGP_C57BL6NJ_G0025758.1 mouse_genomes_project 2 9144038 9150981 - Pfkfb3 protein_coding processed_transcript MGP_C57BL6NJ_T0057815.1 MGP_C57BL6NJ_G0026853.1 mouse_genomes_project 2 132976565 132978256 + MGP_C57BL6NJ_P0057815 Eid1 protein_coding protein_coding MGP_C57BL6NJ_T0054970.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37176288 37230262 + MGP_C57BL6NJ_P0054970 Rabgap1 protein_coding protein_coding MGP_C57BL6NJ_T0054971.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37176294 37302393 + MGP_C57BL6NJ_P0054971 Rabgap1 protein_coding protein_coding MGP_C57BL6NJ_T0054972.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37176305 37222873 + Rabgap1 protein_coding retained_intron MGP_C57BL6NJ_T0054973.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37184645 37186798 + Rabgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0054974.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37185254 37209158 + MGP_C57BL6NJ_P0054974 Rabgap1 protein_coding protein_coding MGP_C57BL6NJ_T0054975.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37185254 37280911 + MGP_C57BL6NJ_P0054975 Rabgap1 protein_coding protein_coding MGP_C57BL6NJ_T0054976.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37185276 37302410 + MGP_C57BL6NJ_P0054976 Rabgap1 protein_coding protein_coding MGP_C57BL6NJ_T0054978.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37225555 37228619 + Rabgap1 protein_coding retained_intron MGP_C57BL6NJ_T0054979.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37226603 37245055 + Rabgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0054981.1 MGP_C57BL6NJ_G0026114.1 mouse_genomes_project 2 37252391 37301009 + Rabgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056711.1 MGP_C57BL6NJ_G0026595.1 mouse_genomes_project 2 97916705 98058951 - MGP_C57BL6NJ_P0056711 Tspan18 protein_coding protein_coding MGP_C57BL6NJ_T0056712.1 MGP_C57BL6NJ_G0026595.1 mouse_genomes_project 2 97919192 97943543 - MGP_C57BL6NJ_P0056712 Tspan18 protein_coding protein_coding MGP_C57BL6NJ_T0056713.1 MGP_C57BL6NJ_G0026595.1 mouse_genomes_project 2 98034616 98058969 - Tspan18 protein_coding processed_transcript MGP_C57BL6NJ_T0056714.1 MGP_C57BL6NJ_G0026595.1 mouse_genomes_project 2 98034616 98035869 - Tspan18 protein_coding processed_transcript MGP_C57BL6NJ_T0056178.1 MGP_C57BL6NJ_G0026357.1 mouse_genomes_project 2 89288627 89289557 - MGP_C57BL6NJ_P0056178 Olfr1016 protein_coding protein_coding MGP_C57BL6NJ_T0058794.1 MGP_C57BL6NJ_G0027104.1 mouse_genomes_project 2 162073653 162099101 + MGP_C57BL6NJ_P0058794 Mylk2 protein_coding protein_coding MGP_C57BL6NJ_T0055270.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59404807 59438805 - MGP_C57BL6NJ_P0055270 Cytip protein_coding protein_coding MGP_C57BL6NJ_T0055271.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59409503 59475270 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055272.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59409588 59475280 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055273.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59409720 59435107 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055274.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59423213 59438429 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055275.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59423388 59475281 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055276.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59438285 59475285 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0055277.1 MGP_C57BL6NJ_G0026165.1 mouse_genomes_project 2 59438346 59438967 - Cytip protein_coding processed_transcript MGP_C57BL6NJ_T0011780.1 MGP_C57BL6NJ_G0009865.1 mouse_genomes_project 2 165989906 165990122 + Gm22316 misc_RNA misc_RNA MGP_C57BL6NJ_T0055407.1 MGP_C57BL6NJ_G0026185.1 mouse_genomes_project 2 63290834 63292463 + Tbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0055408.1 MGP_C57BL6NJ_G0026185.1 mouse_genomes_project 2 63292357 63302019 + MGP_C57BL6NJ_P0055408 Tbr1 protein_coding protein_coding MGP_C57BL6NJ_T0055409.1 MGP_C57BL6NJ_G0026185.1 mouse_genomes_project 2 63294166 63300436 + MGP_C57BL6NJ_P0055409 Tbr1 protein_coding protein_coding MGP_C57BL6NJ_T0055410.1 MGP_C57BL6NJ_G0026185.1 mouse_genomes_project 2 63294177 63299706 + Tbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0018308.1 MGP_C57BL6NJ_G0015852.1 mouse_genomes_project 2 124923501 124955245 - Gm29232 processed_transcript processed_transcript MGP_C57BL6NJ_T0004320.1 MGP_C57BL6NJ_G0003810.1 mouse_genomes_project 2 178485639 178492754 + Gm14320 antisense antisense MGP_C57BL6NJ_T0103001.1 MGP_C57BL6NJ_G0040795.1 mouse_genomes_project 2 36514757 36515339 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058668.1 MGP_C57BL6NJ_G0027060.1 mouse_genomes_project 2 160029276 160039699 - MGP_C57BL6NJ_P0058668 protein_coding protein_coding MGP_C57BL6NJ_T0058670.1 MGP_C57BL6NJ_G0027060.1 mouse_genomes_project 2 160031797 160039663 - protein_coding processed_transcript MGP_C57BL6NJ_T0010630.1 MGP_C57BL6NJ_G0008715.1 mouse_genomes_project 2 31707967 31708046 + Gm23363 miRNA miRNA MGP_C57BL6NJ_T0057755.1 MGP_C57BL6NJ_G0026839.1 mouse_genomes_project 2 129790795 129794539 + MGP_C57BL6NJ_P0057755 AA467197 protein_coding protein_coding MGP_C57BL6NJ_T0057756.1 MGP_C57BL6NJ_G0026839.1 mouse_genomes_project 2 129791659 129795001 + MGP_C57BL6NJ_P0057756 AA467197 protein_coding protein_coding MGP_C57BL6NJ_T0057757.1 MGP_C57BL6NJ_G0026839.1 mouse_genomes_project 2 129791724 129794753 + AA467197 protein_coding processed_transcript MGP_C57BL6NJ_T0057758.1 MGP_C57BL6NJ_G0026839.1 mouse_genomes_project 2 129791724 129794895 + MGP_C57BL6NJ_P0057758 AA467197 protein_coding protein_coding MGP_C57BL6NJ_T0007402.1 MGP_C57BL6NJ_G0006070.1 mouse_genomes_project 2 76677128 76677678 + Gm28640 lincRNA lincRNA MGP_C57BL6NJ_T0007404.1 MGP_C57BL6NJ_G0006072.1 mouse_genomes_project 2 76850705 76860928 - 4930441J16Rik lincRNA lincRNA MGP_C57BL6NJ_T0053927.1 MGP_C57BL6NJ_G0025925.1 mouse_genomes_project 2 25884966 25896313 - MGP_C57BL6NJ_P0053927 Tmem8c protein_coding protein_coding MGP_C57BL6NJ_T0053928.1 MGP_C57BL6NJ_G0025925.1 mouse_genomes_project 2 25884968 25892002 - MGP_C57BL6NJ_P0053928 Tmem8c protein_coding protein_coding MGP_C57BL6NJ_T0058046.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141170 137158869 + Sirpa protein_coding processed_transcript MGP_C57BL6NJ_T0058047.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141174 137158872 + Sirpa protein_coding processed_transcript MGP_C57BL6NJ_T0058048.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141174 137164447 + MGP_C57BL6NJ_P0058048 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058049.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141174 137180411 + MGP_C57BL6NJ_P0058049 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058050.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141174 137180411 + MGP_C57BL6NJ_P0058050 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058051.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141200 137159061 + Sirpa protein_coding processed_transcript MGP_C57BL6NJ_T0058052.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141249 137180419 + MGP_C57BL6NJ_P0058052 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058053.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141530 137180411 + MGP_C57BL6NJ_P0058053 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058054.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141540 137180419 + MGP_C57BL6NJ_P0058054 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058055.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141890 137180419 + MGP_C57BL6NJ_P0058055 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058056.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141897 137178780 + Sirpa protein_coding processed_transcript MGP_C57BL6NJ_T0058057.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141903 137178488 + MGP_C57BL6NJ_P0058057 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058058.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137141948 137178375 + MGP_C57BL6NJ_P0058058 Sirpa protein_coding protein_coding MGP_C57BL6NJ_T0058059.1 MGP_C57BL6NJ_G0026911.1 mouse_genomes_project 2 137168875 137176235 + Sirpa protein_coding retained_intron MGP_C57BL6NJ_T0055170.1 MGP_C57BL6NJ_G0026142.1 mouse_genomes_project 2 50769572 50902038 + MGP_C57BL6NJ_P0055170 Lypd6 protein_coding protein_coding MGP_C57BL6NJ_T0055171.1 MGP_C57BL6NJ_G0026142.1 mouse_genomes_project 2 50769605 50899139 + MGP_C57BL6NJ_P0055171 Lypd6 protein_coding protein_coding MGP_C57BL6NJ_T0055172.1 MGP_C57BL6NJ_G0026142.1 mouse_genomes_project 2 50769607 50902033 + MGP_C57BL6NJ_P0055172 Lypd6 protein_coding protein_coding MGP_C57BL6NJ_T0055173.1 MGP_C57BL6NJ_G0026142.1 mouse_genomes_project 2 50833273 50902032 + MGP_C57BL6NJ_P0055173 Lypd6 protein_coding protein_coding MGP_C57BL6NJ_T0055174.1 MGP_C57BL6NJ_G0026142.1 mouse_genomes_project 2 50873657 50882632 + MGP_C57BL6NJ_P0055174 Lypd6 protein_coding protein_coding MGP_C57BL6NJ_T0004149.1 MGP_C57BL6NJ_G0003690.1 mouse_genomes_project 2 72671534 72677279 - Erich2os antisense antisense MGP_C57BL6NJ_T0057137.1 MGP_C57BL6NJ_G0026710.1 mouse_genomes_project 2 118614603 118619620 - MGP_C57BL6NJ_P0057137 Emc4 protein_coding protein_coding MGP_C57BL6NJ_T0057138.1 MGP_C57BL6NJ_G0026710.1 mouse_genomes_project 2 118615385 118619613 - Emc4 protein_coding processed_transcript MGP_C57BL6NJ_T0057852.1 MGP_C57BL6NJ_G0026862.1 mouse_genomes_project 2 133947391 133973234 - MGP_C57BL6NJ_P0057852 Hdc protein_coding protein_coding MGP_C57BL6NJ_T0057853.1 MGP_C57BL6NJ_G0026862.1 mouse_genomes_project 2 133948308 133952758 - Hdc protein_coding processed_transcript MGP_C57BL6NJ_T0057854.1 MGP_C57BL6NJ_G0026862.1 mouse_genomes_project 2 133954730 133973217 - Hdc protein_coding retained_intron MGP_C57BL6NJ_T0057855.1 MGP_C57BL6NJ_G0026862.1 mouse_genomes_project 2 133958811 133962124 - Hdc protein_coding processed_transcript MGP_C57BL6NJ_T0057856.1 MGP_C57BL6NJ_G0026862.1 mouse_genomes_project 2 133970707 133973855 - Hdc protein_coding processed_transcript MGP_C57BL6NJ_T0059491.1 MGP_C57BL6NJ_G0027246.1 mouse_genomes_project 2 173745454 173751705 - MGP_C57BL6NJ_P0059491 Fitm2 protein_coding protein_coding MGP_C57BL6NJ_T0055832.1 MGP_C57BL6NJ_G0026267.1 mouse_genomes_project 2 77240252 77243422 + MGP_C57BL6NJ_P0055832 Hoxd10 protein_coding protein_coding MGP_C57BL6NJ_T0007416.1 MGP_C57BL6NJ_G0006082.1 mouse_genomes_project 2 80045379 80050103 + lincRNA lincRNA MGP_C57BL6NJ_T0058446.1 MGP_C57BL6NJ_G0026997.1 mouse_genomes_project 2 152018178 152301398 + MGP_C57BL6NJ_P0058446 Pcsk2 protein_coding protein_coding MGP_C57BL6NJ_T0058447.1 MGP_C57BL6NJ_G0026997.1 mouse_genomes_project 2 152018293 152049596 + Pcsk2 protein_coding processed_transcript MGP_C57BL6NJ_T0013854.1 MGP_C57BL6NJ_G0011899.1 mouse_genomes_project 2 51243666 51243845 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098861.1 MGP_C57BL6NJ_G0036925.1 mouse_genomes_project 2 96532719 96533120 - pseudogene pseudogene MGP_C57BL6NJ_T0010728.1 MGP_C57BL6NJ_G0008813.1 mouse_genomes_project 2 192862429 192862497 + Mir124a-3 miRNA miRNA MGP_C57BL6NJ_T0018223.1 MGP_C57BL6NJ_G0015803.1 mouse_genomes_project 2 29924673 29931569 - Gm14488 processed_transcript processed_transcript MGP_C57BL6NJ_T0018224.1 MGP_C57BL6NJ_G0015803.1 mouse_genomes_project 2 29924676 29928562 - Gm14488 processed_transcript retained_intron MGP_C57BL6NJ_T0004319.1 MGP_C57BL6NJ_G0003809.1 mouse_genomes_project 2 177946813 177948037 + Gm14291 antisense antisense MGP_C57BL6NJ_T0056252.1 MGP_C57BL6NJ_G0026427.1 mouse_genomes_project 2 91411228 91412185 + MGP_C57BL6NJ_P0056252 Olfr1124 protein_coding protein_coding MGP_C57BL6NJ_T0014107.1 MGP_C57BL6NJ_G0012152.1 mouse_genomes_project 2 147061312 147061626 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103026.1 MGP_C57BL6NJ_G0040820.1 mouse_genomes_project 2 91226769 91227690 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0057716.1 MGP_C57BL6NJ_G0026824.1 mouse_genomes_project 2 129063744 129096179 + MGP_C57BL6NJ_P0057716 Eif3j1 protein_coding protein_coding MGP_C57BL6NJ_T0057717.1 MGP_C57BL6NJ_G0026824.1 mouse_genomes_project 2 129063850 129064527 + Eif3j1 protein_coding processed_transcript MGP_C57BL6NJ_T0013736.1 MGP_C57BL6NJ_G0011781.1 mouse_genomes_project 2 3379837 3383504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007512.1 MGP_C57BL6NJ_G0006159.1 mouse_genomes_project 2 145947155 145953941 - Gm14062 lincRNA lincRNA MGP_C57BL6NJ_T0057096.1 MGP_C57BL6NJ_G0026680.1 mouse_genomes_project 2 117423989 117427918 + MGP_C57BL6NJ_P0057096 protein_coding protein_coding MGP_C57BL6NJ_T0004066.1 MGP_C57BL6NJ_G0003627.1 mouse_genomes_project 2 23893816 23904932 + Grin1os antisense antisense MGP_C57BL6NJ_T0010589.1 MGP_C57BL6NJ_G0008674.1 mouse_genomes_project 2 8067619 8067715 + Mir466d miRNA miRNA MGP_C57BL6NJ_T0001203.1 MGP_C57BL6NJ_G0001109.1 mouse_genomes_project 2 37864980 37867844 - TEC TEC MGP_C57BL6NJ_T0054446.1 MGP_C57BL6NJ_G0026009.1 mouse_genomes_project 2 31127044 31131448 - MGP_C57BL6NJ_P0054446 Qrfp protein_coding protein_coding MGP_C57BL6NJ_T0058505.1 MGP_C57BL6NJ_G0027011.1 mouse_genomes_project 2 153149507 153150820 + MGP_C57BL6NJ_P0058505 Gm561 protein_coding protein_coding MGP_C57BL6NJ_T0056832.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108102459 108245440 + MGP_C57BL6NJ_P0056832 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056833.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108103023 108189418 + Slc1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0056834.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108103058 108189415 + Slc1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0056835.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108103081 108231600 + MGP_C57BL6NJ_P0056835 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056836.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108125009 108189415 + Slc1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0056837.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108159833 108193332 + MGP_C57BL6NJ_P0056837 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056838.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108159915 108231609 + MGP_C57BL6NJ_P0056838 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056839.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108159915 108236427 + MGP_C57BL6NJ_P0056839 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056840.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108172441 108189411 + Slc1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0056841.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108209383 108231087 + MGP_C57BL6NJ_P0056841 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0056842.1 MGP_C57BL6NJ_G0026619.1 mouse_genomes_project 2 108214649 108236241 + MGP_C57BL6NJ_P0056842 Slc1a2 protein_coding protein_coding MGP_C57BL6NJ_T0007409.1 MGP_C57BL6NJ_G0006075.1 mouse_genomes_project 2 77305439 77306500 + Gm14424 lincRNA lincRNA MGP_C57BL6NJ_T0007320.1 MGP_C57BL6NJ_G0006005.1 mouse_genomes_project 2 17896088 17906749 - Gm13346 lincRNA lincRNA MGP_C57BL6NJ_T0001221.1 MGP_C57BL6NJ_G0001127.1 mouse_genomes_project 2 100732326 100755717 + TEC TEC MGP_C57BL6NJ_T0001181.1 MGP_C57BL6NJ_G0001087.1 mouse_genomes_project 2 12537818 12540492 + TEC TEC MGP_C57BL6NJ_T0056176.1 MGP_C57BL6NJ_G0026355.1 mouse_genomes_project 2 89253489 89254407 + MGP_C57BL6NJ_P0056176 Olfr1014 protein_coding protein_coding MGP_C57BL6NJ_T0013747.1 MGP_C57BL6NJ_G0011792.1 mouse_genomes_project 2 9264924 9266188 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056324.1 MGP_C57BL6NJ_G0026487.1 mouse_genomes_project 2 93022795 93023719 + MGP_C57BL6NJ_P0056324 Olfr1201 protein_coding protein_coding MGP_C57BL6NJ_T0059407.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170844862 170876117 + MGP_C57BL6NJ_P0059407 Plcg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059408.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170844872 170890942 + MGP_C57BL6NJ_P0059408 Plcg1 protein_coding protein_coding MGP_C57BL6NJ_T0059409.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170845261 170861503 + MGP_C57BL6NJ_P0059409 Plcg1 protein_coding protein_coding MGP_C57BL6NJ_T0059410.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170845295 170876901 + MGP_C57BL6NJ_P0059410 Plcg1 protein_coding protein_coding MGP_C57BL6NJ_T0059411.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170854601 170876121 + Plcg1 protein_coding processed_transcript MGP_C57BL6NJ_T0059413.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170866101 170875770 + Plcg1 protein_coding retained_intron MGP_C57BL6NJ_T0059414.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170866166 170872522 + Plcg1 protein_coding retained_intron MGP_C57BL6NJ_T0059415.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170867681 170868479 + Plcg1 protein_coding retained_intron MGP_C57BL6NJ_T0059416.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170868161 170868784 + Plcg1 protein_coding retained_intron MGP_C57BL6NJ_T0059417.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170868186 170873062 + Plcg1 protein_coding processed_transcript MGP_C57BL6NJ_T0059418.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170868520 170870762 + Plcg1 protein_coding retained_intron MGP_C57BL6NJ_T0059419.1 MGP_C57BL6NJ_G0027230.1 mouse_genomes_project 2 170873732 170875832 + MGP_C57BL6NJ_P0059419 Plcg1 protein_coding protein_coding MGP_C57BL6NJ_T0056640.1 MGP_C57BL6NJ_G0026583.1 mouse_genomes_project 2 96597704 96644519 - MGP_C57BL6NJ_P0056640 Creb3l1 protein_coding protein_coding MGP_C57BL6NJ_T0056202.1 MGP_C57BL6NJ_G0026380.1 mouse_genomes_project 2 89878080 89879040 - MGP_C57BL6NJ_P0056202 Olfr1047 protein_coding protein_coding MGP_C57BL6NJ_T0058639.1 MGP_C57BL6NJ_G0027055.1 mouse_genomes_project 2 159731840 159754604 + MGP_C57BL6NJ_P0058639 Entpd6 protein_coding protein_coding MGP_C57BL6NJ_T0058640.1 MGP_C57BL6NJ_G0027055.1 mouse_genomes_project 2 159731879 159746239 + Entpd6 protein_coding retained_intron MGP_C57BL6NJ_T0058641.1 MGP_C57BL6NJ_G0027055.1 mouse_genomes_project 2 159731890 159746741 + Entpd6 protein_coding processed_transcript MGP_C57BL6NJ_T0058642.1 MGP_C57BL6NJ_G0027055.1 mouse_genomes_project 2 159731969 159736023 + Entpd6 protein_coding processed_transcript MGP_C57BL6NJ_T0058269.1 MGP_C57BL6NJ_G0026958.1 mouse_genomes_project 2 139670941 139711573 - MGP_C57BL6NJ_P0058269 Rassf2 protein_coding protein_coding MGP_C57BL6NJ_T0058270.1 MGP_C57BL6NJ_G0026958.1 mouse_genomes_project 2 139674378 139711774 - MGP_C57BL6NJ_P0058270 Rassf2 protein_coding protein_coding MGP_C57BL6NJ_T0058271.1 MGP_C57BL6NJ_G0026958.1 mouse_genomes_project 2 139682522 139702745 - Rassf2 protein_coding retained_intron MGP_C57BL6NJ_T0058272.1 MGP_C57BL6NJ_G0026958.1 mouse_genomes_project 2 139684514 139711830 - MGP_C57BL6NJ_P0058272 Rassf2 protein_coding protein_coding MGP_C57BL6NJ_T0058273.1 MGP_C57BL6NJ_G0026958.1 mouse_genomes_project 2 139691307 139710738 - MGP_C57BL6NJ_P0058273 Rassf2 protein_coding protein_coding MGP_C57BL6NJ_T0056405.1 MGP_C57BL6NJ_G0026547.1 mouse_genomes_project 2 94739420 94742406 + MGP_C57BL6NJ_P0056405 protein_coding protein_coding MGP_C57BL6NJ_T0056407.1 MGP_C57BL6NJ_G0026547.1 mouse_genomes_project 2 94741394 94742324 + MGP_C57BL6NJ_P0056407 protein_coding protein_coding MGP_C57BL6NJ_T0101497.1 MGP_C57BL6NJ_G0039543.1 mouse_genomes_project 2 74347681 74347808 - Gm26408 snoRNA snoRNA MGP_C57BL6NJ_T0007531.1 MGP_C57BL6NJ_G0006174.1 mouse_genomes_project 2 160902192 160905233 + Gm14155 lincRNA lincRNA MGP_C57BL6NJ_T0013805.1 MGP_C57BL6NJ_G0011850.1 mouse_genomes_project 2 31647903 31648194 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056400.1 MGP_C57BL6NJ_G0026542.1 mouse_genomes_project 2 94466694 94467449 - MGP_C57BL6NJ_P0056400 protein_coding protein_coding MGP_C57BL6NJ_T0057727.1 MGP_C57BL6NJ_G0026830.1 mouse_genomes_project 2 129289553 129329007 + MGP_C57BL6NJ_P0057727 Sord protein_coding protein_coding MGP_C57BL6NJ_T0057385.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126622779 126643149 + MGP_C57BL6NJ_P0057385 Tyro3 protein_coding protein_coding MGP_C57BL6NJ_T0057386.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126624285 126630697 + Tyro3 protein_coding processed_transcript MGP_C57BL6NJ_T0057387.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126624373 126628382 + Tyro3 protein_coding processed_transcript MGP_C57BL6NJ_T0057388.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126624560 126643149 + MGP_C57BL6NJ_P0057388 Tyro3 protein_coding protein_coding MGP_C57BL6NJ_T0057389.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126626162 126628340 + Tyro3 protein_coding processed_transcript MGP_C57BL6NJ_T0057390.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126628133 126633037 + Tyro3 protein_coding retained_intron MGP_C57BL6NJ_T0057391.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126634254 126643136 + Tyro3 protein_coding retained_intron MGP_C57BL6NJ_T0057392.1 MGP_C57BL6NJ_G0026774.1 mouse_genomes_project 2 126635890 126637436 + Tyro3 protein_coding retained_intron MGP_C57BL6NJ_T0013745.1 MGP_C57BL6NJ_G0011790.1 mouse_genomes_project 2 8698850 8699784 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054934.1 MGP_C57BL6NJ_G0026092.1 mouse_genomes_project 2 36460577 36461516 + MGP_C57BL6NJ_P0054934 Olfr50 protein_coding protein_coding MGP_C57BL6NJ_T0004123.1 MGP_C57BL6NJ_G0003669.1 mouse_genomes_project 2 53241861 53244190 + antisense antisense MGP_C57BL6NJ_T0055690.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73512033 73624718 - MGP_C57BL6NJ_P0055690 Slc25a12 protein_coding protein_coding MGP_C57BL6NJ_T0055691.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73515660 73624502 - MGP_C57BL6NJ_P0055691 Slc25a12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055692.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73516047 73537321 - Slc25a12 protein_coding processed_transcript MGP_C57BL6NJ_T0055693.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73522279 73525508 - Slc25a12 protein_coding retained_intron MGP_C57BL6NJ_T0055694.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73559754 73577348 - Slc25a12 protein_coding processed_transcript MGP_C57BL6NJ_T0055695.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73578247 73599774 - Slc25a12 protein_coding processed_transcript MGP_C57BL6NJ_T0055696.1 MGP_C57BL6NJ_G0026240.1 mouse_genomes_project 2 73599631 73603570 - Slc25a12 protein_coding processed_transcript MGP_C57BL6NJ_T0054504.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658014 31667267 - MGP_C57BL6NJ_P0054504 Swi5 protein_coding protein_coding MGP_C57BL6NJ_T0054505.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658014 31662063 - MGP_C57BL6NJ_P0054505 Swi5 protein_coding protein_coding MGP_C57BL6NJ_T0054506.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658014 31667134 - MGP_C57BL6NJ_P0054506 Swi5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054507.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658014 31667204 - MGP_C57BL6NJ_P0054507 Swi5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054508.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658014 31667274 - MGP_C57BL6NJ_P0054508 Swi5 protein_coding protein_coding MGP_C57BL6NJ_T0054509.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31658116 31667268 - MGP_C57BL6NJ_P0054509 Swi5 protein_coding protein_coding MGP_C57BL6NJ_T0054510.1 MGP_C57BL6NJ_G0026019.1 mouse_genomes_project 2 31662479 31667230 - Swi5 protein_coding retained_intron MGP_C57BL6NJ_T0013971.1 MGP_C57BL6NJ_G0012016.1 mouse_genomes_project 2 91236838 91237238 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101496.1 MGP_C57BL6NJ_G0039542.1 mouse_genomes_project 2 69283217 69283349 + Gm23328 snoRNA snoRNA MGP_C57BL6NJ_T0004308.1 MGP_C57BL6NJ_G0003802.1 mouse_genomes_project 2 174503950 174522988 + A730032A03Rik antisense antisense MGP_C57BL6NJ_T0004309.1 MGP_C57BL6NJ_G0003802.1 mouse_genomes_project 2 174519192 174522988 + A730032A03Rik antisense antisense MGP_C57BL6NJ_T0052948.1 MGP_C57BL6NJ_G0025754.1 mouse_genomes_project 2 7637610 7675878 - MGP_C57BL6NJ_P0052948 Itih2 protein_coding protein_coding MGP_C57BL6NJ_T0052949.1 MGP_C57BL6NJ_G0025754.1 mouse_genomes_project 2 7652360 7676290 - MGP_C57BL6NJ_P0052949 Itih2 protein_coding protein_coding MGP_C57BL6NJ_T0052950.1 MGP_C57BL6NJ_G0025754.1 mouse_genomes_project 2 7671495 7676611 - MGP_C57BL6NJ_P0052950 Itih2 protein_coding protein_coding MGP_C57BL6NJ_T0055720.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74210601 74242854 + MGP_C57BL6NJ_P0055720 Pdk1 protein_coding protein_coding MGP_C57BL6NJ_T0055721.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74210697 74222929 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055722.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74210703 74225309 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055723.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74210723 74240982 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055724.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74210928 74223181 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055725.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74211120 74227949 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055726.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74212456 74222604 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055727.1 MGP_C57BL6NJ_G0026246.1 mouse_genomes_project 2 74226414 74235489 + Pdk1 protein_coding processed_transcript MGP_C57BL6NJ_T0014127.1 MGP_C57BL6NJ_G0012172.1 mouse_genomes_project 2 154109697 154110161 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053489.1 MGP_C57BL6NJ_G0025845.1 mouse_genomes_project 2 23833899 23836211 - MGP_C57BL6NJ_P0053489 Rnf224 protein_coding protein_coding MGP_C57BL6NJ_T0053490.1 MGP_C57BL6NJ_G0025845.1 mouse_genomes_project 2 23834406 23836113 - MGP_C57BL6NJ_P0053490 Rnf224 protein_coding protein_coding MGP_C57BL6NJ_T0058890.1 MGP_C57BL6NJ_G0027132.1 mouse_genomes_project 2 163488397 163494701 + MGP_C57BL6NJ_P0058890 Bpifa1 protein_coding protein_coding MGP_C57BL6NJ_T0058891.1 MGP_C57BL6NJ_G0027132.1 mouse_genomes_project 2 163488416 163490647 + Bpifa1 protein_coding processed_transcript MGP_C57BL6NJ_T0058892.1 MGP_C57BL6NJ_G0027132.1 mouse_genomes_project 2 163489820 163493218 + Bpifa1 protein_coding processed_transcript MGP_C57BL6NJ_T0058762.1 MGP_C57BL6NJ_G0027093.1 mouse_genomes_project 2 161710440 161714487 - MGP_C57BL6NJ_P0058762 Defb19 protein_coding protein_coding MGP_C57BL6NJ_T0000474.1 MGP_C57BL6NJ_G0000393.1 mouse_genomes_project 2 20893523 20893593 - mt-Td Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0018351.1 MGP_C57BL6NJ_G0015873.1 mouse_genomes_project 2 162563153 162567800 - 2500004C02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018352.1 MGP_C57BL6NJ_G0015873.1 mouse_genomes_project 2 162564511 162565218 - 2500004C02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018353.1 MGP_C57BL6NJ_G0015873.1 mouse_genomes_project 2 162564631 162568063 - 2500004C02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0056639.1 MGP_C57BL6NJ_G0026582.1 mouse_genomes_project 2 96557886 96559839 + MGP_C57BL6NJ_P0056639 Gm9821 protein_coding protein_coding MGP_C57BL6NJ_T0001155.1 MGP_C57BL6NJ_G0001061.1 mouse_genomes_project 2 7588819 7590501 + TEC TEC MGP_C57BL6NJ_T0059326.1 MGP_C57BL6NJ_G0027211.1 mouse_genomes_project 2 167875980 167922942 - MGP_C57BL6NJ_P0059326 Tti1 protein_coding protein_coding MGP_C57BL6NJ_T0059327.1 MGP_C57BL6NJ_G0027211.1 mouse_genomes_project 2 167875989 167903840 - MGP_C57BL6NJ_P0059327 Tti1 protein_coding protein_coding MGP_C57BL6NJ_T0059328.1 MGP_C57BL6NJ_G0027211.1 mouse_genomes_project 2 167889457 167901690 - Tti1 protein_coding processed_transcript MGP_C57BL6NJ_T0059329.1 MGP_C57BL6NJ_G0027211.1 mouse_genomes_project 2 167903247 167905776 - MGP_C57BL6NJ_P0059329 Tti1 protein_coding protein_coding MGP_C57BL6NJ_T0013782.1 MGP_C57BL6NJ_G0011827.1 mouse_genomes_project 2 21356109 21356646 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010722.1 MGP_C57BL6NJ_G0008807.1 mouse_genomes_project 2 185808551 185808630 - Mir296 miRNA miRNA MGP_C57BL6NJ_T0099257.1 MGP_C57BL6NJ_G0037321.1 mouse_genomes_project 2 109597898 109598037 + Gm24644 scaRNA scaRNA MGP_C57BL6NJ_T0057092.1 MGP_C57BL6NJ_G0026676.1 mouse_genomes_project 2 117373122 117374034 - MGP_C57BL6NJ_P0057092 Olfr1277 protein_coding protein_coding MGP_C57BL6NJ_T0004062.1 MGP_C57BL6NJ_G0003623.1 mouse_genomes_project 2 19032800 19036659 - Gm13362 antisense antisense MGP_C57BL6NJ_T0004310.1 MGP_C57BL6NJ_G0003803.1 mouse_genomes_project 2 175180055 175198076 - Gm11457 antisense antisense MGP_C57BL6NJ_T0004311.1 MGP_C57BL6NJ_G0003803.1 mouse_genomes_project 2 175180065 175198081 - Gm11457 antisense antisense MGP_C57BL6NJ_T0004312.1 MGP_C57BL6NJ_G0003803.1 mouse_genomes_project 2 175180077 175198123 - Gm11457 antisense antisense MGP_C57BL6NJ_T0057437.1 MGP_C57BL6NJ_G0026782.1 mouse_genomes_project 2 127033523 127058295 - Pla2g4e protein_coding retained_intron MGP_C57BL6NJ_T0057438.1 MGP_C57BL6NJ_G0026782.1 mouse_genomes_project 2 127033523 127115562 - MGP_C57BL6NJ_P0057438 Pla2g4e protein_coding protein_coding MGP_C57BL6NJ_T0057439.1 MGP_C57BL6NJ_G0026782.1 mouse_genomes_project 2 127039284 127115309 - Pla2g4e protein_coding retained_intron MGP_C57BL6NJ_T0057440.1 MGP_C57BL6NJ_G0026782.1 mouse_genomes_project 2 127056491 127115335 - Pla2g4e protein_coding processed_transcript MGP_C57BL6NJ_T0103043.1 MGP_C57BL6NJ_G0040837.1 mouse_genomes_project 2 94487487 94488411 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0055239.1 MGP_C57BL6NJ_G0026155.1 mouse_genomes_project 2 54048058 54106114 - MGP_C57BL6NJ_P0055239 Prpf40a protein_coding protein_coding MGP_C57BL6NJ_T0055240.1 MGP_C57BL6NJ_G0026155.1 mouse_genomes_project 2 54052521 54058659 - Prpf40a protein_coding processed_transcript MGP_C57BL6NJ_T0055241.1 MGP_C57BL6NJ_G0026155.1 mouse_genomes_project 2 54066393 54106173 - MGP_C57BL6NJ_P0055241 Prpf40a protein_coding protein_coding MGP_C57BL6NJ_T0055242.1 MGP_C57BL6NJ_G0026155.1 mouse_genomes_project 2 54087282 54106093 - Prpf40a protein_coding processed_transcript MGP_C57BL6NJ_T0055243.1 MGP_C57BL6NJ_G0026155.1 mouse_genomes_project 2 54091056 54106114 - Prpf40a protein_coding processed_transcript MGP_C57BL6NJ_T0052793.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1033210 1189492 + Frmd4a protein_coding processed_transcript MGP_C57BL6NJ_T0052794.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1033227 1037398 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052795.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1033237 1679589 + MGP_C57BL6NJ_P0052795 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052796.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1175469 1193911 + Frmd4a protein_coding processed_transcript MGP_C57BL6NJ_T0052797.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1175478 1679490 + MGP_C57BL6NJ_P0052797 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052798.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1333410 1636771 + MGP_C57BL6NJ_P0052798 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052799.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1333777 1603223 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052800.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1333895 1624594 + MGP_C57BL6NJ_P0052800 Frmd4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052801.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1368988 1658969 + MGP_C57BL6NJ_P0052801 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052802.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1437603 1594159 + MGP_C57BL6NJ_P0052802 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052803.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1437605 1487309 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052804.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1453361 1679591 + MGP_C57BL6NJ_P0052804 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052805.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1453823 1485161 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052806.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1453857 1602062 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052807.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1473949 1679593 + MGP_C57BL6NJ_P0052807 Frmd4a protein_coding protein_coding MGP_C57BL6NJ_T0052808.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1530971 1557800 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052809.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1624087 1662272 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052810.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1624108 1652516 + Frmd4a protein_coding retained_intron MGP_C57BL6NJ_T0052811.1 MGP_C57BL6NJ_G0025728.1 mouse_genomes_project 2 1630502 1659005 + MGP_C57BL6NJ_P0052811 Frmd4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013928.1 MGP_C57BL6NJ_G0011973.1 mouse_genomes_project 2 77178060 77178519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054932.1 MGP_C57BL6NJ_G0026091.1 mouse_genomes_project 2 36448165 36453290 + MGP_C57BL6NJ_P0054932 Olfr348 protein_coding protein_coding MGP_C57BL6NJ_T0054933.1 MGP_C57BL6NJ_G0026091.1 mouse_genomes_project 2 36452348 36453290 + MGP_C57BL6NJ_P0054933 Olfr348 protein_coding protein_coding MGP_C57BL6NJ_T0056349.1 MGP_C57BL6NJ_G0026509.1 mouse_genomes_project 2 93589220 93590239 - MGP_C57BL6NJ_P0056349 Olfr1229 protein_coding protein_coding MGP_C57BL6NJ_T0056350.1 MGP_C57BL6NJ_G0026509.1 mouse_genomes_project 2 93589277 93594972 - MGP_C57BL6NJ_P0056350 Olfr1229 protein_coding protein_coding MGP_C57BL6NJ_T0057173.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120433471 120507236 - MGP_C57BL6NJ_P0057173 Aqr protein_coding protein_coding MGP_C57BL6NJ_T0057174.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120437463 120507174 - MGP_C57BL6NJ_P0057174 Aqr protein_coding protein_coding MGP_C57BL6NJ_T0057175.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120444337 120451381 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0057176.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120464969 120473126 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0057177.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120465350 120507143 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0057178.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120484725 120507235 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0057179.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120490581 120507235 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0057180.1 MGP_C57BL6NJ_G0026723.1 mouse_genomes_project 2 120502027 120507313 - Aqr protein_coding processed_transcript MGP_C57BL6NJ_T0004324.1 MGP_C57BL6NJ_G0003814.1 mouse_genomes_project 2 181645988 181660879 - Gm16796 antisense antisense MGP_C57BL6NJ_T0058721.1 MGP_C57BL6NJ_G0027074.1 mouse_genomes_project 2 161169621 161183895 + MGP_C57BL6NJ_P0058721 Scrt2 protein_coding protein_coding MGP_C57BL6NJ_T0058132.1 MGP_C57BL6NJ_G0026932.1 mouse_genomes_project 2 138223816 138244829 - MGP_C57BL6NJ_P0058132 Fastkd5 protein_coding protein_coding MGP_C57BL6NJ_T0058133.1 MGP_C57BL6NJ_G0026932.1 mouse_genomes_project 2 138224169 138244816 - MGP_C57BL6NJ_P0058133 Fastkd5 protein_coding protein_coding MGP_C57BL6NJ_T0007309.1 MGP_C57BL6NJ_G0005996.1 mouse_genomes_project 2 8636599 8664885 + Gm13264 lincRNA lincRNA MGP_C57BL6NJ_T0014156.1 MGP_C57BL6NJ_G0012201.1 mouse_genomes_project 2 163421959 163422539 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100215.1 MGP_C57BL6NJ_G0038261.1 mouse_genomes_project 2 133989056 133989205 - Gm23753 snRNA snRNA MGP_C57BL6NJ_T0013732.1 MGP_C57BL6NJ_G0011777.1 mouse_genomes_project 2 2054462 2054687 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058106.1 MGP_C57BL6NJ_G0026924.1 mouse_genomes_project 2 138005791 138007213 + MGP_C57BL6NJ_P0058106 Tmem239 protein_coding protein_coding MGP_C57BL6NJ_T0013823.1 MGP_C57BL6NJ_G0011868.1 mouse_genomes_project 2 37421191 37421987 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010592.1 MGP_C57BL6NJ_G0008677.1 mouse_genomes_project 2 8069347 8069445 + Mir669m-2 miRNA miRNA MGP_C57BL6NJ_T0059348.1 MGP_C57BL6NJ_G0027216.1 mouse_genomes_project 2 168242602 168258951 + Lbp protein_coding processed_transcript MGP_C57BL6NJ_T0059349.1 MGP_C57BL6NJ_G0027216.1 mouse_genomes_project 2 168242602 168248494 + MGP_C57BL6NJ_P0059349 Lbp protein_coding protein_coding MGP_C57BL6NJ_T0059350.1 MGP_C57BL6NJ_G0027216.1 mouse_genomes_project 2 168242602 168272934 + MGP_C57BL6NJ_P0059350 Lbp protein_coding protein_coding MGP_C57BL6NJ_T0059351.1 MGP_C57BL6NJ_G0027216.1 mouse_genomes_project 2 168242721 168256601 + Lbp protein_coding retained_intron MGP_C57BL6NJ_T0059352.1 MGP_C57BL6NJ_G0027216.1 mouse_genomes_project 2 168252193 168262637 + MGP_C57BL6NJ_P0059352 Lbp protein_coding protein_coding MGP_C57BL6NJ_T0060102.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191962000 191979077 + MGP_C57BL6NJ_P0060102 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060103.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191962013 191979198 + protein_coding retained_intron MGP_C57BL6NJ_T0060104.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191962017 191973906 + protein_coding retained_intron MGP_C57BL6NJ_T0060105.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191962017 191979205 + MGP_C57BL6NJ_P0060105 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060106.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191971887 191976189 + protein_coding retained_intron MGP_C57BL6NJ_T0060107.1 MGP_C57BL6NJ_G0027406.1 mouse_genomes_project 2 191976291 191979203 + protein_coding retained_intron MGP_C57BL6NJ_T0055351.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61553075 61593812 + MGP_C57BL6NJ_P0055351 March7 protein_coding protein_coding MGP_C57BL6NJ_T0055352.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61553101 61595277 + March7 protein_coding processed_transcript MGP_C57BL6NJ_T0055353.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61553261 61592574 + MGP_C57BL6NJ_P0055353 March7 protein_coding protein_coding MGP_C57BL6NJ_T0055354.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61569374 61592558 + MGP_C57BL6NJ_P0055354 March7 protein_coding protein_coding MGP_C57BL6NJ_T0055355.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61576704 61578956 + March7 protein_coding processed_transcript MGP_C57BL6NJ_T0055356.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61581300 61592558 + MGP_C57BL6NJ_P0055356 March7 protein_coding protein_coding MGP_C57BL6NJ_T0055357.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61581434 61587737 + March7 protein_coding processed_transcript MGP_C57BL6NJ_T0055358.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61587615 61592556 + March7 protein_coding processed_transcript MGP_C57BL6NJ_T0055359.1 MGP_C57BL6NJ_G0026177.1 mouse_genomes_project 2 61591943 61592558 + March7 protein_coding processed_transcript MGP_C57BL6NJ_T0013984.1 MGP_C57BL6NJ_G0012029.1 mouse_genomes_project 2 93513900 93514707 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060293.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193383059 193398868 + MGP_C57BL6NJ_P0060293 Zgpat protein_coding protein_coding MGP_C57BL6NJ_T0060294.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193383536 193398856 + MGP_C57BL6NJ_P0060294 Zgpat protein_coding protein_coding MGP_C57BL6NJ_T0060295.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193383554 193401702 + MGP_C57BL6NJ_P0060295 Zgpat protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060296.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193383583 193401700 + Zgpat protein_coding retained_intron MGP_C57BL6NJ_T0060297.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193396467 193397893 + Zgpat protein_coding retained_intron MGP_C57BL6NJ_T0060298.1 MGP_C57BL6NJ_G0027442.1 mouse_genomes_project 2 193397712 193398812 + MGP_C57BL6NJ_P0060298 Zgpat protein_coding protein_coding MGP_C57BL6NJ_T0056168.1 MGP_C57BL6NJ_G0026348.1 mouse_genomes_project 2 89133026 89135704 - MGP_C57BL6NJ_P0056168 Olfr154 protein_coding protein_coding MGP_C57BL6NJ_T0018296.1 MGP_C57BL6NJ_G0015848.1 mouse_genomes_project 2 120343540 120399790 + A530058N18Rik processed_transcript antisense MGP_C57BL6NJ_T0018297.1 MGP_C57BL6NJ_G0015848.1 mouse_genomes_project 2 120343544 120392600 + A530058N18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018240.1 MGP_C57BL6NJ_G0015812.1 mouse_genomes_project 2 58372140 58427156 - BB557941 processed_transcript processed_transcript MGP_C57BL6NJ_T0101526.1 MGP_C57BL6NJ_G0039572.1 mouse_genomes_project 2 152798107 152798345 - Snord17 snoRNA snoRNA MGP_C57BL6NJ_T0060178.1 MGP_C57BL6NJ_G0027423.1 mouse_genomes_project 2 192669115 192690207 + MGP_C57BL6NJ_P0060178 Slc17a9 protein_coding protein_coding MGP_C57BL6NJ_T0060179.1 MGP_C57BL6NJ_G0027423.1 mouse_genomes_project 2 192669231 192682352 + Slc17a9 protein_coding retained_intron MGP_C57BL6NJ_T0060180.1 MGP_C57BL6NJ_G0027423.1 mouse_genomes_project 2 192669252 192685039 + Slc17a9 protein_coding processed_transcript MGP_C57BL6NJ_T0060181.1 MGP_C57BL6NJ_G0027423.1 mouse_genomes_project 2 192684344 192689265 + Slc17a9 protein_coding processed_transcript MGP_C57BL6NJ_T0060182.1 MGP_C57BL6NJ_G0027423.1 mouse_genomes_project 2 192686200 192689343 + Slc17a9 protein_coding retained_intron MGP_C57BL6NJ_T0060262.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333460 193372525 + MGP_C57BL6NJ_P0060262 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060263.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333474 193363367 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060264.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333483 193372487 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060265.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333483 193372525 + MGP_C57BL6NJ_P0060265 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060266.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333506 193372525 + MGP_C57BL6NJ_P0060266 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060267.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333506 193372525 + MGP_C57BL6NJ_P0060267 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060268.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333506 193372487 + MGP_C57BL6NJ_P0060268 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060269.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193333684 193337416 + MGP_C57BL6NJ_P0060269 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060270.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193342338 193372525 + MGP_C57BL6NJ_P0060270 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060271.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193350486 193362957 + MGP_C57BL6NJ_P0060271 Rtel1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060272.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193353667 193362940 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060273.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193365363 193365864 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060274.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193365926 193367972 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060275.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193366036 193367064 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060276.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193367990 193371461 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060277.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193370308 193371722 + Rtel1 protein_coding processed_transcript MGP_C57BL6NJ_T0060278.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193371111 193371926 + Rtel1 protein_coding retained_intron MGP_C57BL6NJ_T0060279.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193371602 193372524 + Rtel1 protein_coding processed_transcript MGP_C57BL6NJ_T0060280.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193371673 193372523 + MGP_C57BL6NJ_P0060280 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060281.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193371878 193372525 + MGP_C57BL6NJ_P0060281 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0060282.1 MGP_C57BL6NJ_G0027440.1 mouse_genomes_project 2 193371878 193372525 + MGP_C57BL6NJ_P0060282 Rtel1 protein_coding protein_coding MGP_C57BL6NJ_T0058659.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159927344 160007622 - MGP_C57BL6NJ_P0058659 Ninl protein_coding protein_coding MGP_C57BL6NJ_T0058660.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159929865 159934195 - Ninl protein_coding processed_transcript MGP_C57BL6NJ_T0058661.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159930379 159948546 - MGP_C57BL6NJ_P0058661 Ninl protein_coding protein_coding MGP_C57BL6NJ_T0058662.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159948244 159949678 - Ninl protein_coding retained_intron MGP_C57BL6NJ_T0058663.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159954498 159967955 - MGP_C57BL6NJ_P0058663 Ninl protein_coding protein_coding MGP_C57BL6NJ_T0058664.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159960244 159968089 - Ninl protein_coding processed_transcript MGP_C57BL6NJ_T0058665.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159960336 160007556 - Ninl protein_coding processed_transcript MGP_C57BL6NJ_T0058666.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159963057 160007600 - Ninl protein_coding processed_transcript MGP_C57BL6NJ_T0058667.1 MGP_C57BL6NJ_G0027059.1 mouse_genomes_project 2 159972231 160039683 - MGP_C57BL6NJ_P0058667 Ninl protein_coding protein_coding MGP_C57BL6NJ_T0001197.1 MGP_C57BL6NJ_G0001103.1 mouse_genomes_project 2 35418949 35421964 - TEC TEC MGP_C57BL6NJ_T0053014.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9419501 9420580 - Fbxo18 protein_coding processed_transcript MGP_C57BL6NJ_T0053015.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9419503 9458439 - MGP_C57BL6NJ_P0053015 Fbxo18 protein_coding protein_coding MGP_C57BL6NJ_T0053016.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9420595 9425835 - Fbxo18 protein_coding retained_intron MGP_C57BL6NJ_T0053017.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9424455 9458364 - Fbxo18 protein_coding retained_intron MGP_C57BL6NJ_T0053018.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9425042 9438416 - MGP_C57BL6NJ_P0053018 Fbxo18 protein_coding protein_coding MGP_C57BL6NJ_T0053019.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9426060 9434158 - Fbxo18 protein_coding retained_intron MGP_C57BL6NJ_T0053020.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9434067 9439333 - Fbxo18 protein_coding retained_intron MGP_C57BL6NJ_T0053021.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9443791 9458407 - Fbxo18 protein_coding processed_transcript MGP_C57BL6NJ_T0053022.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9445084 9458405 - Fbxo18 protein_coding processed_transcript MGP_C57BL6NJ_T0053023.1 MGP_C57BL6NJ_G0025763.1 mouse_genomes_project 2 9448354 9458364 - Fbxo18 protein_coding processed_transcript MGP_C57BL6NJ_T0010573.1 MGP_C57BL6NJ_G0008658.1 mouse_genomes_project 2 8044553 8046863 + miRNA miRNA MGP_C57BL6NJ_T0010677.1 MGP_C57BL6NJ_G0008762.1 mouse_genomes_project 2 120482498 120482553 - Mir7002 miRNA miRNA MGP_C57BL6NJ_T0053726.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24694514 24704307 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0053727.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24694514 24718132 - MGP_C57BL6NJ_P0053727 Ubac1 protein_coding protein_coding MGP_C57BL6NJ_T0053728.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24694777 24705608 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0053729.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24701790 24712697 - MGP_C57BL6NJ_P0053729 Ubac1 protein_coding protein_coding MGP_C57BL6NJ_T0053730.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24702913 24717917 - MGP_C57BL6NJ_P0053730 Ubac1 protein_coding protein_coding MGP_C57BL6NJ_T0053731.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24705279 24707338 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0053732.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24706919 24713863 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0053733.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24711296 24717951 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0053734.1 MGP_C57BL6NJ_G0025893.1 mouse_genomes_project 2 24712349 24717987 - Ubac1 protein_coding processed_transcript MGP_C57BL6NJ_T0059380.1 MGP_C57BL6NJ_G0027223.1 mouse_genomes_project 2 168630239 168733860 + Ppp1r16b protein_coding retained_intron MGP_C57BL6NJ_T0059381.1 MGP_C57BL6NJ_G0027223.1 mouse_genomes_project 2 168630239 168740705 + MGP_C57BL6NJ_P0059381 Ppp1r16b protein_coding protein_coding MGP_C57BL6NJ_T0059382.1 MGP_C57BL6NJ_G0027223.1 mouse_genomes_project 2 168631574 168740705 + MGP_C57BL6NJ_P0059382 Ppp1r16b protein_coding protein_coding MGP_C57BL6NJ_T0059383.1 MGP_C57BL6NJ_G0027223.1 mouse_genomes_project 2 168631960 168740705 + MGP_C57BL6NJ_P0059383 Ppp1r16b protein_coding protein_coding MGP_C57BL6NJ_T0059384.1 MGP_C57BL6NJ_G0027223.1 mouse_genomes_project 2 168660883 168740705 + MGP_C57BL6NJ_P0059384 Ppp1r16b protein_coding protein_coding MGP_C57BL6NJ_T0057268.1 MGP_C57BL6NJ_G0026744.1 mouse_genomes_project 2 125486671 125519691 + MGP_C57BL6NJ_P0057268 Disp2 protein_coding protein_coding MGP_C57BL6NJ_T0057269.1 MGP_C57BL6NJ_G0026744.1 mouse_genomes_project 2 125486674 125502128 + MGP_C57BL6NJ_P0057269 Disp2 protein_coding protein_coding MGP_C57BL6NJ_T0057270.1 MGP_C57BL6NJ_G0026744.1 mouse_genomes_project 2 125486691 125519810 + MGP_C57BL6NJ_P0057270 Disp2 protein_coding protein_coding MGP_C57BL6NJ_T0057271.1 MGP_C57BL6NJ_G0026744.1 mouse_genomes_project 2 125486694 125497002 + MGP_C57BL6NJ_P0057271 Disp2 protein_coding protein_coding MGP_C57BL6NJ_T0057272.1 MGP_C57BL6NJ_G0026744.1 mouse_genomes_project 2 125486711 125497001 + Disp2 protein_coding retained_intron MGP_C57BL6NJ_T0102992.1 MGP_C57BL6NJ_G0040786.1 mouse_genomes_project 2 20892850 20893522 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007413.1 MGP_C57BL6NJ_G0006079.1 mouse_genomes_project 2 78050584 78058707 + Gm13658 lincRNA lincRNA MGP_C57BL6NJ_T0054203.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265531 29286539 + MGP_C57BL6NJ_P0054203 Tbc1d13 protein_coding protein_coding MGP_C57BL6NJ_T0054204.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265531 29269082 + MGP_C57BL6NJ_P0054204 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054205.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265557 29266938 + Tbc1d13 protein_coding retained_intron MGP_C57BL6NJ_T0054206.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265576 29268965 + Tbc1d13 protein_coding processed_transcript MGP_C57BL6NJ_T0054207.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265591 29268462 + MGP_C57BL6NJ_P0054207 Tbc1d13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054208.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29265606 29269299 + Tbc1d13 protein_coding processed_transcript MGP_C57BL6NJ_T0054209.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29268815 29273910 + Tbc1d13 protein_coding processed_transcript MGP_C57BL6NJ_T0054210.1 MGP_C57BL6NJ_G0025973.1 mouse_genomes_project 2 29273664 29278322 + Tbc1d13 protein_coding retained_intron MGP_C57BL6NJ_T0058147.1 MGP_C57BL6NJ_G0026936.1 mouse_genomes_project 2 138306093 138310546 - Slc4a11 protein_coding retained_intron MGP_C57BL6NJ_T0058148.1 MGP_C57BL6NJ_G0026936.1 mouse_genomes_project 2 138306093 138319304 - MGP_C57BL6NJ_P0058148 Slc4a11 protein_coding protein_coding MGP_C57BL6NJ_T0058149.1 MGP_C57BL6NJ_G0026936.1 mouse_genomes_project 2 138308557 138319254 - Slc4a11 protein_coding retained_intron MGP_C57BL6NJ_T0058150.1 MGP_C57BL6NJ_G0026936.1 mouse_genomes_project 2 138312617 138313767 - Slc4a11 protein_coding retained_intron MGP_C57BL6NJ_T0058151.1 MGP_C57BL6NJ_G0026936.1 mouse_genomes_project 2 138313333 138319254 - MGP_C57BL6NJ_P0058151 Slc4a11 protein_coding protein_coding MGP_C57BL6NJ_T0057091.1 MGP_C57BL6NJ_G0026675.1 mouse_genomes_project 2 117359249 117360188 + MGP_C57BL6NJ_P0057091 Olfr1276 protein_coding protein_coding MGP_C57BL6NJ_T0056368.1 MGP_C57BL6NJ_G0026522.1 mouse_genomes_project 2 93930202 93931147 - MGP_C57BL6NJ_P0056368 Olfr1246 protein_coding protein_coding MGP_C57BL6NJ_T0099375.1 MGP_C57BL6NJ_G0037433.1 mouse_genomes_project 2 143614838 143615811 + Gm14209 sense_intronic sense_intronic MGP_C57BL6NJ_T0055837.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77262794 77301041 + MGP_C57BL6NJ_P0055837 Hoxd3 protein_coding protein_coding MGP_C57BL6NJ_T0055842.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77283765 77296980 + MGP_C57BL6NJ_P0055842 Hoxd3 protein_coding protein_coding MGP_C57BL6NJ_T0055843.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77288483 77300685 + MGP_C57BL6NJ_P0055843 Hoxd3 protein_coding protein_coding MGP_C57BL6NJ_T0055844.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77291587 77300670 + MGP_C57BL6NJ_P0055844 Hoxd3 protein_coding protein_coding MGP_C57BL6NJ_T0055845.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77298443 77299366 + MGP_C57BL6NJ_P0055845 Hoxd3 protein_coding protein_coding MGP_C57BL6NJ_T0055846.1 MGP_C57BL6NJ_G0026270.1 mouse_genomes_project 2 77298491 77301212 + Hoxd3 protein_coding retained_intron MGP_C57BL6NJ_T0004258.1 MGP_C57BL6NJ_G0003761.1 mouse_genomes_project 2 151330157 151330765 + Kif16bos antisense antisense MGP_C57BL6NJ_T0054043.1 MGP_C57BL6NJ_G0025950.1 mouse_genomes_project 2 27819461 27826560 + Ddx31 protein_coding processed_transcript MGP_C57BL6NJ_T0054044.1 MGP_C57BL6NJ_G0025950.1 mouse_genomes_project 2 27819514 27885687 + MGP_C57BL6NJ_P0054044 Ddx31 protein_coding protein_coding MGP_C57BL6NJ_T0054045.1 MGP_C57BL6NJ_G0025950.1 mouse_genomes_project 2 27823950 27835280 + Ddx31 protein_coding processed_transcript MGP_C57BL6NJ_T0054046.1 MGP_C57BL6NJ_G0025950.1 mouse_genomes_project 2 27836189 27839126 + Ddx31 protein_coding processed_transcript MGP_C57BL6NJ_T0001218.1 MGP_C57BL6NJ_G0001124.1 mouse_genomes_project 2 72694745 72695471 - TEC TEC MGP_C57BL6NJ_T0004306.1 MGP_C57BL6NJ_G0003800.1 mouse_genomes_project 2 173976327 173983795 - Gm16316 antisense antisense MGP_C57BL6NJ_T0001233.1 MGP_C57BL6NJ_G0001138.1 mouse_genomes_project 2 180682569 180686832 - TEC TEC MGP_C57BL6NJ_T0058592.1 MGP_C57BL6NJ_G0027033.1 mouse_genomes_project 2 157562854 157567915 + MGP_C57BL6NJ_P0058592 Cstl1 protein_coding protein_coding MGP_C57BL6NJ_T0058593.1 MGP_C57BL6NJ_G0027033.1 mouse_genomes_project 2 157562857 157567860 + MGP_C57BL6NJ_P0058593 Cstl1 protein_coding protein_coding MGP_C57BL6NJ_T0058594.1 MGP_C57BL6NJ_G0027033.1 mouse_genomes_project 2 157562892 157567860 + MGP_C57BL6NJ_P0058594 Cstl1 protein_coding protein_coding MGP_C57BL6NJ_T0004222.1 MGP_C57BL6NJ_G0003737.1 mouse_genomes_project 2 129892544 129897617 - Bloc1s6os antisense antisense MGP_C57BL6NJ_T0053799.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25122383 25130167 + MGP_C57BL6NJ_P0053799 Pmpca protein_coding protein_coding MGP_C57BL6NJ_T0053800.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25122392 25126986 + MGP_C57BL6NJ_P0053800 Pmpca protein_coding protein_coding MGP_C57BL6NJ_T0053801.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25122398 25123340 + Pmpca protein_coding processed_transcript MGP_C57BL6NJ_T0053802.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25122398 25123247 + Pmpca protein_coding processed_transcript MGP_C57BL6NJ_T0053803.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25122400 25125011 + Pmpca protein_coding processed_transcript MGP_C57BL6NJ_T0053804.1 MGP_C57BL6NJ_G0025904.1 mouse_genomes_project 2 25123971 25125443 + Pmpca protein_coding processed_transcript MGP_C57BL6NJ_T0014041.1 MGP_C57BL6NJ_G0012086.1 mouse_genomes_project 2 114485926 114486186 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004304.1 MGP_C57BL6NJ_G0003799.1 mouse_genomes_project 2 173932646 173933598 + 0610039K10Rik antisense antisense MGP_C57BL6NJ_T0004305.1 MGP_C57BL6NJ_G0003799.1 mouse_genomes_project 2 173932646 173933597 + 0610039K10Rik antisense antisense MGP_C57BL6NJ_T0056127.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287516 88288749 + MGP_C57BL6NJ_P0056127 Slc43a3 protein_coding protein_coding MGP_C57BL6NJ_T0056128.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287554 88289245 + MGP_C57BL6NJ_P0056128 Slc43a3 protein_coding protein_coding MGP_C57BL6NJ_T0056129.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287583 88303571 + MGP_C57BL6NJ_P0056129 Slc43a3 protein_coding protein_coding MGP_C57BL6NJ_T0056130.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287601 88317832 + MGP_C57BL6NJ_P0056130 Slc43a3 protein_coding protein_coding MGP_C57BL6NJ_T0056131.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287626 88288596 + Slc43a3 protein_coding processed_transcript MGP_C57BL6NJ_T0056132.1 MGP_C57BL6NJ_G0026333.1 mouse_genomes_project 2 88287818 88307118 + Slc43a3 protein_coding retained_intron MGP_C57BL6NJ_T0014028.1 MGP_C57BL6NJ_G0012073.1 mouse_genomes_project 2 110175857 110178487 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004279.1 MGP_C57BL6NJ_G0003778.1 mouse_genomes_project 2 161787298 161788746 - 1700030C14Rik antisense antisense MGP_C57BL6NJ_T0101518.1 MGP_C57BL6NJ_G0039564.1 mouse_genomes_project 2 137654916 137655045 + Gm24665 snoRNA snoRNA MGP_C57BL6NJ_T0007573.1 MGP_C57BL6NJ_G0006209.1 mouse_genomes_project 2 178700146 178704104 + Gm14319 lincRNA lincRNA MGP_C57BL6NJ_T0056355.1 MGP_C57BL6NJ_G0026514.1 mouse_genomes_project 2 93675691 93676636 - MGP_C57BL6NJ_P0056355 Olfr1234 protein_coding protein_coding MGP_C57BL6NJ_T0056356.1 MGP_C57BL6NJ_G0026514.1 mouse_genomes_project 2 93675691 93678070 - MGP_C57BL6NJ_P0056356 Olfr1234 protein_coding protein_coding MGP_C57BL6NJ_T0056357.1 MGP_C57BL6NJ_G0026514.1 mouse_genomes_project 2 93676772 93678074 - Olfr1234 protein_coding processed_transcript MGP_C57BL6NJ_T0100177.1 MGP_C57BL6NJ_G0038223.1 mouse_genomes_project 2 23583956 23584063 - Gm25518 snRNA snRNA MGP_C57BL6NJ_T0054939.1 MGP_C57BL6NJ_G0026097.1 mouse_genomes_project 2 36566120 36567056 - MGP_C57BL6NJ_P0054939 Olfr353 protein_coding protein_coding MGP_C57BL6NJ_T0058796.1 MGP_C57BL6NJ_G0027106.1 mouse_genomes_project 2 162117907 162128317 - MGP_C57BL6NJ_P0058796 Dusp15 protein_coding protein_coding MGP_C57BL6NJ_T0058797.1 MGP_C57BL6NJ_G0027106.1 mouse_genomes_project 2 162117932 162121467 - Dusp15 protein_coding retained_intron MGP_C57BL6NJ_T0058798.1 MGP_C57BL6NJ_G0027106.1 mouse_genomes_project 2 162121843 162128443 - MGP_C57BL6NJ_P0058798 Dusp15 protein_coding protein_coding MGP_C57BL6NJ_T0058799.1 MGP_C57BL6NJ_G0027106.1 mouse_genomes_project 2 162121887 162128559 - MGP_C57BL6NJ_P0058799 Dusp15 protein_coding protein_coding MGP_C57BL6NJ_T0102606.1 MGP_C57BL6NJ_G0040418.1 mouse_genomes_project 2 111700526 111744645 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102607.1 MGP_C57BL6NJ_G0040418.1 mouse_genomes_project 2 111742236 112125486 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102608.1 MGP_C57BL6NJ_G0040418.1 mouse_genomes_project 2 111946767 112125486 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102609.1 MGP_C57BL6NJ_G0040418.1 mouse_genomes_project 2 111951118 112066467 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102610.1 MGP_C57BL6NJ_G0040418.1 mouse_genomes_project 2 112123549 112142005 + unitary_pseudogene retained_intron MGP_C57BL6NJ_T0004100.1 MGP_C57BL6NJ_G0003651.1 mouse_genomes_project 2 31604011 31607612 - Gm13610 antisense antisense MGP_C57BL6NJ_T0053836.1 MGP_C57BL6NJ_G0025909.1 mouse_genomes_project 2 25347080 25406521 + MGP_C57BL6NJ_P0053836 Gm20532 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013795.1 MGP_C57BL6NJ_G0011840.1 mouse_genomes_project 2 25496956 25497651 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060052.1 MGP_C57BL6NJ_G0027391.1 mouse_genomes_project 2 186002753 186009924 + MGP_C57BL6NJ_P0060052 Tubb1 protein_coding protein_coding MGP_C57BL6NJ_T0059003.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048726 165095970 + MGP_C57BL6NJ_P0059003 Acss2 protein_coding protein_coding MGP_C57BL6NJ_T0059004.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048811 165056070 + Acss2 protein_coding retained_intron MGP_C57BL6NJ_T0059005.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048835 165119871 + MGP_C57BL6NJ_P0059005 Acss2 protein_coding protein_coding MGP_C57BL6NJ_T0059006.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048847 165085613 + Acss2 protein_coding retained_intron MGP_C57BL6NJ_T0059007.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048885 165095304 + MGP_C57BL6NJ_P0059007 Acss2 protein_coding protein_coding MGP_C57BL6NJ_T0059008.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165048885 165095304 + MGP_C57BL6NJ_P0059008 Acss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059009.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165082446 165083084 + Acss2 protein_coding retained_intron MGP_C57BL6NJ_T0059010.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165082457 165090588 + MGP_C57BL6NJ_P0059010 Acss2 protein_coding protein_coding MGP_C57BL6NJ_T0059014.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165101773 165119413 + Acss2 protein_coding processed_transcript MGP_C57BL6NJ_T0059015.1 MGP_C57BL6NJ_G0027160.1 mouse_genomes_project 2 165106058 165110177 + Acss2 protein_coding retained_intron MGP_C57BL6NJ_T0101551.1 MGP_C57BL6NJ_G0039597.1 mouse_genomes_project 2 179877956 179878085 - Gm25214 snoRNA snoRNA MGP_C57BL6NJ_T0060025.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185827606 185889064 + MGP_C57BL6NJ_P0060025 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060026.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185827606 185844052 + MGP_C57BL6NJ_P0060026 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060027.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185828644 185889064 + MGP_C57BL6NJ_P0060027 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060028.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185845015 185897482 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060029.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185845015 185850688 + MGP_C57BL6NJ_P0060029 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060030.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185845015 185897724 + MGP_C57BL6NJ_P0060030 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060031.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185845015 185897482 + MGP_C57BL6NJ_P0060031 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060032.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185845015 185897692 + MGP_C57BL6NJ_P0060032 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060033.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185877063 185896221 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060034.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185877192 185897482 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060035.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185877223 185878441 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060036.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185877250 185889064 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060037.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185877516 185896259 + Gnas protein_coding processed_transcript MGP_C57BL6NJ_T0060038.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185879499 185897724 + MGP_C57BL6NJ_P0060038 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060039.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185879590 185897724 + MGP_C57BL6NJ_P0060039 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060040.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185879780 185889064 + MGP_C57BL6NJ_P0060040 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060041.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185879789 185897368 + MGP_C57BL6NJ_P0060041 Gnas protein_coding protein_coding MGP_C57BL6NJ_T0060043.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185892683 185896389 + Gnas protein_coding retained_intron MGP_C57BL6NJ_T0060044.1 MGP_C57BL6NJ_G0027387.1 mouse_genomes_project 2 185895629 185896708 + Gnas protein_coding retained_intron MGP_C57BL6NJ_T0053568.1 MGP_C57BL6NJ_G0025860.1 mouse_genomes_project 2 24029441 24034889 + MGP_C57BL6NJ_P0053568 Entpd2 protein_coding protein_coding MGP_C57BL6NJ_T0053569.1 MGP_C57BL6NJ_G0025860.1 mouse_genomes_project 2 24029483 24034860 + Entpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0053570.1 MGP_C57BL6NJ_G0025860.1 mouse_genomes_project 2 24032320 24033417 + Entpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0055929.1 MGP_C57BL6NJ_G0026291.1 mouse_genomes_project 2 79899537 79957992 - MGP_C57BL6NJ_P0055929 Sestd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055930.1 MGP_C57BL6NJ_G0026291.1 mouse_genomes_project 2 79910291 79912834 - Sestd1 protein_coding processed_transcript MGP_C57BL6NJ_T0055931.1 MGP_C57BL6NJ_G0026291.1 mouse_genomes_project 2 79910293 80000069 - Sestd1 protein_coding processed_transcript MGP_C57BL6NJ_T0101527.1 MGP_C57BL6NJ_G0039573.1 mouse_genomes_project 2 156927719 156928032 + Gm24221 snoRNA snoRNA MGP_C57BL6NJ_T0053494.1 MGP_C57BL6NJ_G0025847.1 mouse_genomes_project 2 23841678 23842821 + MGP_C57BL6NJ_P0053494 Rnf208 protein_coding protein_coding MGP_C57BL6NJ_T0053495.1 MGP_C57BL6NJ_G0025847.1 mouse_genomes_project 2 23842352 23843685 + MGP_C57BL6NJ_P0053495 Rnf208 protein_coding protein_coding MGP_C57BL6NJ_T0053496.1 MGP_C57BL6NJ_G0025847.1 mouse_genomes_project 2 23842361 23843686 + MGP_C57BL6NJ_P0053496 Rnf208 protein_coding protein_coding MGP_C57BL6NJ_T0013953.1 MGP_C57BL6NJ_G0011998.1 mouse_genomes_project 2 85702818 85703409 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007517.1 MGP_C57BL6NJ_G0006163.1 mouse_genomes_project 2 155483948 155495354 - Gm14114 lincRNA lincRNA MGP_C57BL6NJ_T0103037.1 MGP_C57BL6NJ_G0040831.1 mouse_genomes_project 2 92502616 92503552 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0060189.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192926033 192947159 - MGP_C57BL6NJ_P0060189 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0060190.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192926033 192947159 - MGP_C57BL6NJ_P0060190 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0060191.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192926033 192935539 - MGP_C57BL6NJ_P0060191 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0060192.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192927246 192947080 - MGP_C57BL6NJ_P0060192 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0060193.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192928442 192947154 - MGP_C57BL6NJ_P0060193 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0060194.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192935625 192946779 - Nkain4 protein_coding processed_transcript MGP_C57BL6NJ_T0060195.1 MGP_C57BL6NJ_G0027427.1 mouse_genomes_project 2 192936201 192942052 - MGP_C57BL6NJ_P0060195 Nkain4 protein_coding protein_coding MGP_C57BL6NJ_T0001214.1 MGP_C57BL6NJ_G0001120.1 mouse_genomes_project 2 70968240 70969734 + TEC TEC MGP_C57BL6NJ_T0102463.1 MGP_C57BL6NJ_G0040352.1 mouse_genomes_project 2 92336074 92336916 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0056843.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108266699 108386687 - MGP_C57BL6NJ_P0056843 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056844.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108266699 108386727 - MGP_C57BL6NJ_P0056844 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056845.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108268088 108386557 - MGP_C57BL6NJ_P0056845 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056846.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108268105 108386572 - MGP_C57BL6NJ_P0056846 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056847.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108269678 108386431 - MGP_C57BL6NJ_P0056847 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056848.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108269678 108386412 - MGP_C57BL6NJ_P0056848 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056849.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108269688 108386412 - MGP_C57BL6NJ_P0056849 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056850.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108269691 108386408 - MGP_C57BL6NJ_P0056850 Cd44 protein_coding protein_coding MGP_C57BL6NJ_T0056851.1 MGP_C57BL6NJ_G0026620.1 mouse_genomes_project 2 108308796 108386520 - Cd44 protein_coding retained_intron MGP_C57BL6NJ_T0018338.1 MGP_C57BL6NJ_G0015865.1 mouse_genomes_project 2 138513695 138544803 - A730017L22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018339.1 MGP_C57BL6NJ_G0015865.1 mouse_genomes_project 2 138519116 138544826 - A730017L22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0004220.1 MGP_C57BL6NJ_G0003735.1 mouse_genomes_project 2 128250479 128252782 - Gm14978 antisense antisense MGP_C57BL6NJ_T0010563.1 MGP_C57BL6NJ_G0008648.1 mouse_genomes_project 2 8035138 8035235 + Mir669b miRNA miRNA MGP_C57BL6NJ_T0053805.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25129560 25132520 - MGP_C57BL6NJ_P0053805 Inpp5e protein_coding protein_coding MGP_C57BL6NJ_T0053806.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25130098 25143572 - Inpp5e protein_coding processed_transcript MGP_C57BL6NJ_T0053807.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25130341 25143591 - Inpp5e protein_coding processed_transcript MGP_C57BL6NJ_T0053808.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25130883 25142975 - MGP_C57BL6NJ_P0053808 Inpp5e protein_coding protein_coding MGP_C57BL6NJ_T0053809.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25132308 25133525 - Inpp5e protein_coding processed_transcript MGP_C57BL6NJ_T0053810.1 MGP_C57BL6NJ_G0025905.1 mouse_genomes_project 2 25132461 25135255 - MGP_C57BL6NJ_P0053810 Inpp5e protein_coding protein_coding MGP_C57BL6NJ_T0058648.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159820897 159830975 - Abhd12 protein_coding processed_transcript MGP_C57BL6NJ_T0058649.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159820897 159895755 - MGP_C57BL6NJ_P0058649 Abhd12 protein_coding protein_coding MGP_C57BL6NJ_T0058650.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159820921 159895745 - MGP_C57BL6NJ_P0058650 Abhd12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058651.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159821520 159828127 - MGP_C57BL6NJ_P0058651 Abhd12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058652.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159825763 159895676 - Abhd12 protein_coding processed_transcript MGP_C57BL6NJ_T0058653.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159831437 159839895 - Abhd12 protein_coding retained_intron MGP_C57BL6NJ_T0058654.1 MGP_C57BL6NJ_G0027057.1 mouse_genomes_project 2 159834734 159895661 - MGP_C57BL6NJ_P0058654 Abhd12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001165.1 MGP_C57BL6NJ_G0001071.1 mouse_genomes_project 2 10060455 10062974 - TEC TEC MGP_C57BL6NJ_T0052959.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8797430 8900224 + Prkcq protein_coding retained_intron MGP_C57BL6NJ_T0052960.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8797628 8924745 + Prkcq protein_coding retained_intron MGP_C57BL6NJ_T0052961.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8856693 8940572 + MGP_C57BL6NJ_P0052961 Prkcq protein_coding protein_coding MGP_C57BL6NJ_T0052962.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8859112 8940567 + MGP_C57BL6NJ_P0052962 Prkcq protein_coding protein_coding MGP_C57BL6NJ_T0052963.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8879778 8886981 + Prkcq protein_coding retained_intron MGP_C57BL6NJ_T0052964.1 MGP_C57BL6NJ_G0025757.1 mouse_genomes_project 2 8882189 8941146 + Prkcq protein_coding processed_transcript MGP_C57BL6NJ_T0011755.1 MGP_C57BL6NJ_G0009840.1 mouse_genomes_project 2 35751918 35752061 - Gm27953 misc_RNA misc_RNA MGP_C57BL6NJ_T0014019.1 MGP_C57BL6NJ_G0012064.1 mouse_genomes_project 2 108746872 108747299 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055515.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68296852 68467097 - MGP_C57BL6NJ_P0055515 Scn9a protein_coding protein_coding MGP_C57BL6NJ_T0055516.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68296852 68467097 - MGP_C57BL6NJ_P0055516 Scn9a protein_coding protein_coding MGP_C57BL6NJ_T0055517.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68298863 68466798 - MGP_C57BL6NJ_P0055517 Scn9a protein_coding protein_coding MGP_C57BL6NJ_T0055518.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68298863 68466798 - MGP_C57BL6NJ_P0055518 Scn9a protein_coding protein_coding MGP_C57BL6NJ_T0055519.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68299889 68466798 - MGP_C57BL6NJ_P0055519 Scn9a protein_coding protein_coding MGP_C57BL6NJ_T0055520.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68364316 68367477 - Scn9a protein_coding retained_intron MGP_C57BL6NJ_T0055521.1 MGP_C57BL6NJ_G0026203.1 mouse_genomes_project 2 68390816 68467107 - Scn9a protein_coding retained_intron MGP_C57BL6NJ_T0053599.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24091693 24093532 + Clic3 protein_coding processed_transcript MGP_C57BL6NJ_T0053600.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24091693 24093632 + MGP_C57BL6NJ_P0053600 Clic3 protein_coding protein_coding MGP_C57BL6NJ_T0053601.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24091704 24093632 + MGP_C57BL6NJ_P0053601 Clic3 protein_coding protein_coding MGP_C57BL6NJ_T0053602.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24091746 24093632 + Clic3 protein_coding processed_transcript MGP_C57BL6NJ_T0053603.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24091752 24093539 + Clic3 protein_coding processed_transcript MGP_C57BL6NJ_T0053604.1 MGP_C57BL6NJ_G0025865.1 mouse_genomes_project 2 24092491 24093071 + Clic3 protein_coding processed_transcript MGP_C57BL6NJ_T0014188.1 MGP_C57BL6NJ_G0012233.1 mouse_genomes_project 2 176514138 176514714 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004328.1 MGP_C57BL6NJ_G0003818.1 mouse_genomes_project 2 184421713 184430609 - Gm14453 antisense antisense MGP_C57BL6NJ_T0057257.1 MGP_C57BL6NJ_G0026740.1 mouse_genomes_project 2 125405416 125410277 - MGP_C57BL6NJ_P0057257 Ankrd63 protein_coding protein_coding MGP_C57BL6NJ_T0007347.1 MGP_C57BL6NJ_G0006025.1 mouse_genomes_project 2 33458831 33465157 - Gm13403 lincRNA lincRNA MGP_C57BL6NJ_T0007348.1 MGP_C57BL6NJ_G0006025.1 mouse_genomes_project 2 33460938 33465189 - Gm13403 lincRNA lincRNA MGP_C57BL6NJ_T0014008.1 MGP_C57BL6NJ_G0012053.1 mouse_genomes_project 2 103708455 103708780 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014142.1 MGP_C57BL6NJ_G0012187.1 mouse_genomes_project 2 159344102 159344497 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013828.1 MGP_C57BL6NJ_G0011873.1 mouse_genomes_project 2 39096256 39096619 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056271.1 MGP_C57BL6NJ_G0026439.1 mouse_genomes_project 2 91657926 91658865 - MGP_C57BL6NJ_P0056271 protein_coding protein_coding MGP_C57BL6NJ_T0103058.1 MGP_C57BL6NJ_G0040852.1 mouse_genomes_project 2 157762897 157766870 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101513.1 MGP_C57BL6NJ_G0039559.1 mouse_genomes_project 2 126558180 126558309 - Gm25857 snoRNA snoRNA MGP_C57BL6NJ_T0059829.1 MGP_C57BL6NJ_G0027333.1 mouse_genomes_project 2 177933508 177994575 - MGP_C57BL6NJ_P0059829 Ptgis protein_coding protein_coding MGP_C57BL6NJ_T0059830.1 MGP_C57BL6NJ_G0027333.1 mouse_genomes_project 2 177948144 177994590 - MGP_C57BL6NJ_P0059830 Ptgis protein_coding protein_coding MGP_C57BL6NJ_T0059831.1 MGP_C57BL6NJ_G0027333.1 mouse_genomes_project 2 177951759 177953654 - Ptgis protein_coding retained_intron MGP_C57BL6NJ_T0007329.1 MGP_C57BL6NJ_G0006011.1 mouse_genomes_project 2 23940346 23948616 - lincRNA lincRNA MGP_C57BL6NJ_T0013756.1 MGP_C57BL6NJ_G0011801.1 mouse_genomes_project 2 13187723 13188519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060053.1 MGP_C57BL6NJ_G0027392.1 mouse_genomes_project 2 186013104 186016138 - MGP_C57BL6NJ_P0060053 Atp5e protein_coding protein_coding MGP_C57BL6NJ_T0060054.1 MGP_C57BL6NJ_G0027392.1 mouse_genomes_project 2 186013107 186016082 - Atp5e protein_coding retained_intron MGP_C57BL6NJ_T0060055.1 MGP_C57BL6NJ_G0027392.1 mouse_genomes_project 2 186014548 186016122 - Atp5e protein_coding retained_intron MGP_C57BL6NJ_T0053132.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12897834 12930921 + MGP_C57BL6NJ_P0053132 Arl5b protein_coding protein_coding MGP_C57BL6NJ_T0053134.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12903679 12930925 + MGP_C57BL6NJ_P0053134 Arl5b protein_coding protein_coding MGP_C57BL6NJ_T0053135.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12903726 12925064 + MGP_C57BL6NJ_P0053135 Arl5b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053136.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12903786 12926040 + MGP_C57BL6NJ_P0053136 Arl5b protein_coding protein_coding MGP_C57BL6NJ_T0053137.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12916607 12925074 + MGP_C57BL6NJ_P0053137 Arl5b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053138.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12918430 12921640 + Arl5b protein_coding retained_intron MGP_C57BL6NJ_T0053139.1 MGP_C57BL6NJ_G0025781.1 mouse_genomes_project 2 12923467 12930921 + MGP_C57BL6NJ_P0053139 Arl5b protein_coding protein_coding MGP_C57BL6NJ_T0014183.1 MGP_C57BL6NJ_G0012228.1 mouse_genomes_project 2 173029528 173029861 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013868.1 MGP_C57BL6NJ_G0011913.1 mouse_genomes_project 2 55289003 55290478 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055834.1 MGP_C57BL6NJ_G0026269.1 mouse_genomes_project 2 77254555 77256735 + MGP_C57BL6NJ_P0055834 Hoxd8 protein_coding protein_coding MGP_C57BL6NJ_T0055835.1 MGP_C57BL6NJ_G0026269.1 mouse_genomes_project 2 77254845 77257856 + MGP_C57BL6NJ_P0055835 Hoxd8 protein_coding protein_coding MGP_C57BL6NJ_T0055836.1 MGP_C57BL6NJ_G0026269.1 mouse_genomes_project 2 77255091 77257230 + MGP_C57BL6NJ_P0055836 Hoxd8 protein_coding protein_coding MGP_C57BL6NJ_T0059074.1 MGP_C57BL6NJ_G0027173.1 mouse_genomes_project 2 165507981 165512326 - MGP_C57BL6NJ_P0059074 Gdf5 protein_coding protein_coding MGP_C57BL6NJ_T0007305.1 MGP_C57BL6NJ_G0005994.1 mouse_genomes_project 2 6831716 6894472 + Gm13219 lincRNA lincRNA MGP_C57BL6NJ_T0007306.1 MGP_C57BL6NJ_G0005994.1 mouse_genomes_project 2 6831775 6939891 + Gm13219 lincRNA lincRNA MGP_C57BL6NJ_T0007307.1 MGP_C57BL6NJ_G0005994.1 mouse_genomes_project 2 6831805 6895833 + Gm13219 lincRNA lincRNA MGP_C57BL6NJ_T0101485.1 MGP_C57BL6NJ_G0039531.1 mouse_genomes_project 2 46794061 46794184 + Gm23072 snoRNA snoRNA MGP_C57BL6NJ_T0057080.1 MGP_C57BL6NJ_G0026669.1 mouse_genomes_project 2 116700165 117035566 - MGP_C57BL6NJ_P0057080 Ano3 protein_coding protein_coding MGP_C57BL6NJ_T0057081.1 MGP_C57BL6NJ_G0026669.1 mouse_genomes_project 2 116734046 117035015 - Ano3 protein_coding retained_intron MGP_C57BL6NJ_T0057082.1 MGP_C57BL6NJ_G0026669.1 mouse_genomes_project 2 116762670 116818786 - MGP_C57BL6NJ_P0057082 Ano3 protein_coding protein_coding MGP_C57BL6NJ_T0101494.1 MGP_C57BL6NJ_G0039540.1 mouse_genomes_project 2 64353005 64353141 - Gm22020 snoRNA snoRNA MGP_C57BL6NJ_T0014109.1 MGP_C57BL6NJ_G0012154.1 mouse_genomes_project 2 148085579 148086007 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001167.1 MGP_C57BL6NJ_G0001073.1 mouse_genomes_project 2 10099580 10102192 - TEC TEC MGP_C57BL6NJ_T0058967.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631708 164637489 + Itch protein_coding retained_intron MGP_C57BL6NJ_T0058968.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631708 164676581 + Itch protein_coding retained_intron MGP_C57BL6NJ_T0058969.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631708 164729134 + MGP_C57BL6NJ_P0058969 Itch protein_coding protein_coding MGP_C57BL6NJ_T0058970.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631723 164679439 + Itch protein_coding retained_intron MGP_C57BL6NJ_T0058971.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631730 164705010 + Itch protein_coding processed_transcript MGP_C57BL6NJ_T0058972.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631758 164729132 + MGP_C57BL6NJ_P0058972 Itch protein_coding protein_coding MGP_C57BL6NJ_T0058973.1 MGP_C57BL6NJ_G0027153.1 mouse_genomes_project 2 164631760 164714866 + Itch protein_coding retained_intron MGP_C57BL6NJ_T0010697.1 MGP_C57BL6NJ_G0008782.1 mouse_genomes_project 2 154482815 154483003 + Gm25026 miRNA miRNA MGP_C57BL6NJ_T0056340.1 MGP_C57BL6NJ_G0026501.1 mouse_genomes_project 2 93425032 93425968 - MGP_C57BL6NJ_P0056340 Olfr1220 protein_coding protein_coding MGP_C57BL6NJ_T0007446.1 MGP_C57BL6NJ_G0006106.1 mouse_genomes_project 2 108682893 108688001 + Gm13874 lincRNA lincRNA MGP_C57BL6NJ_T0007447.1 MGP_C57BL6NJ_G0006106.1 mouse_genomes_project 2 108683277 108688001 + Gm13874 lincRNA lincRNA MGP_C57BL6NJ_T0007448.1 MGP_C57BL6NJ_G0006106.1 mouse_genomes_project 2 108687334 108696208 + Gm13874 lincRNA lincRNA MGP_C57BL6NJ_T0057857.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 133981997 134032346 - MGP_C57BL6NJ_P0057857 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057858.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 133983468 134032280 - MGP_C57BL6NJ_P0057858 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057859.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 133983470 134032322 - MGP_C57BL6NJ_P0057859 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057860.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 133993145 134033115 - MGP_C57BL6NJ_P0057860 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057861.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 133993530 134032264 - MGP_C57BL6NJ_P0057861 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057862.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 134002257 134032370 - MGP_C57BL6NJ_P0057862 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057863.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 134006835 134032117 - Gabpb1 protein_coding processed_transcript MGP_C57BL6NJ_T0057864.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 134008124 134032130 - MGP_C57BL6NJ_P0057864 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0057865.1 MGP_C57BL6NJ_G0026863.1 mouse_genomes_project 2 134008201 134020089 - MGP_C57BL6NJ_P0057865 Gabpb1 protein_coding protein_coding MGP_C57BL6NJ_T0010718.1 MGP_C57BL6NJ_G0008803.1 mouse_genomes_project 2 183479125 183479268 + Gm44301 miRNA miRNA MGP_C57BL6NJ_T0058682.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581789 160600995 + MGP_C57BL6NJ_P0058682 Fkbp1a protein_coding protein_coding MGP_C57BL6NJ_T0058683.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581891 160600131 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0058684.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581900 160598923 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0058685.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581900 160583982 + Fkbp1a protein_coding retained_intron MGP_C57BL6NJ_T0058686.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581921 160599131 + Fkbp1a protein_coding retained_intron MGP_C57BL6NJ_T0058687.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160581927 160600245 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0058688.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160582002 160596780 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0058689.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160582043 160599956 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0058690.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160583203 160600993 + MGP_C57BL6NJ_P0058690 Fkbp1a protein_coding protein_coding MGP_C57BL6NJ_T0058691.1 MGP_C57BL6NJ_G0027064.1 mouse_genomes_project 2 160584714 160600016 + Fkbp1a protein_coding processed_transcript MGP_C57BL6NJ_T0004282.1 MGP_C57BL6NJ_G0003781.1 mouse_genomes_project 2 164049361 164051996 - Gm14198 antisense antisense MGP_C57BL6NJ_T0007304.1 MGP_C57BL6NJ_G0005993.1 mouse_genomes_project 2 6666538 6674245 + 1700061F12Rik lincRNA lincRNA MGP_C57BL6NJ_T0059736.1 MGP_C57BL6NJ_G0027319.1 mouse_genomes_project 2 176020203 176035652 + MGP_C57BL6NJ_P0059736 Slc2a10 protein_coding protein_coding MGP_C57BL6NJ_T0059737.1 MGP_C57BL6NJ_G0027319.1 mouse_genomes_project 2 176023533 176030512 + Slc2a10 protein_coding processed_transcript MGP_C57BL6NJ_T0057807.1 MGP_C57BL6NJ_G0026849.1 mouse_genomes_project 2 132585338 132796365 - MGP_C57BL6NJ_P0057807 Fbn1 protein_coding protein_coding MGP_C57BL6NJ_T0057808.1 MGP_C57BL6NJ_G0026849.1 mouse_genomes_project 2 132585371 132797973 - MGP_C57BL6NJ_P0057808 Fbn1 protein_coding protein_coding MGP_C57BL6NJ_T0057809.1 MGP_C57BL6NJ_G0026849.1 mouse_genomes_project 2 132675853 132796052 - Fbn1 protein_coding retained_intron MGP_C57BL6NJ_T0014190.1 MGP_C57BL6NJ_G0012235.1 mouse_genomes_project 2 177159088 177159584 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056305.1 MGP_C57BL6NJ_G0026470.1 mouse_genomes_project 2 92571336 92572260 - MGP_C57BL6NJ_P0056305 Olfr1179 protein_coding protein_coding MGP_C57BL6NJ_T0059305.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167406917 167416960 - MGP_C57BL6NJ_P0059305 Blcap protein_coding protein_coding MGP_C57BL6NJ_T0059306.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167406917 167416936 - MGP_C57BL6NJ_P0059306 Blcap protein_coding protein_coding MGP_C57BL6NJ_T0059307.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167408657 167421509 - MGP_C57BL6NJ_P0059307 Blcap protein_coding protein_coding MGP_C57BL6NJ_T0059308.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167408743 167410563 - Blcap protein_coding processed_transcript MGP_C57BL6NJ_T0059319.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167416146 167416930 - Blcap protein_coding processed_transcript MGP_C57BL6NJ_T0059320.1 MGP_C57BL6NJ_G0027207.1 mouse_genomes_project 2 167417473 167421509 - Blcap protein_coding processed_transcript MGP_C57BL6NJ_T0101482.1 MGP_C57BL6NJ_G0039528.1 mouse_genomes_project 2 40245314 40245440 + Gm24467 snoRNA snoRNA MGP_C57BL6NJ_T0059979.1 MGP_C57BL6NJ_G0027373.1 mouse_genomes_project 2 184371377 184388633 + Spo11 protein_coding retained_intron MGP_C57BL6NJ_T0059980.1 MGP_C57BL6NJ_G0027373.1 mouse_genomes_project 2 184373511 184388627 + MGP_C57BL6NJ_P0059980 Spo11 protein_coding protein_coding MGP_C57BL6NJ_T0059981.1 MGP_C57BL6NJ_G0027373.1 mouse_genomes_project 2 184373518 184388629 + MGP_C57BL6NJ_P0059981 Spo11 protein_coding protein_coding MGP_C57BL6NJ_T0059982.1 MGP_C57BL6NJ_G0027373.1 mouse_genomes_project 2 184373518 184388638 + MGP_C57BL6NJ_P0059982 Spo11 protein_coding protein_coding MGP_C57BL6NJ_T0059983.1 MGP_C57BL6NJ_G0027373.1 mouse_genomes_project 2 184380938 184387115 + Spo11 protein_coding processed_transcript MGP_C57BL6NJ_T0056613.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96333668 96531041 + MGP_C57BL6NJ_P0056613 Ambra1 protein_coding protein_coding MGP_C57BL6NJ_T0056614.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96333672 96531040 + MGP_C57BL6NJ_P0056614 Ambra1 protein_coding protein_coding MGP_C57BL6NJ_T0056615.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96333716 96421257 + Ambra1 protein_coding processed_transcript MGP_C57BL6NJ_T0056616.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96333718 96531040 + MGP_C57BL6NJ_P0056616 Ambra1 protein_coding protein_coding MGP_C57BL6NJ_T0056617.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96333759 96531041 + MGP_C57BL6NJ_P0056617 Ambra1 protein_coding protein_coding MGP_C57BL6NJ_T0056618.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96373249 96531041 + MGP_C57BL6NJ_P0056618 Ambra1 protein_coding protein_coding MGP_C57BL6NJ_T0056619.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96380006 96436196 + Ambra1 protein_coding processed_transcript MGP_C57BL6NJ_T0056620.1 MGP_C57BL6NJ_G0026578.1 mouse_genomes_project 2 96421955 96437029 + Ambra1 protein_coding processed_transcript MGP_C57BL6NJ_T0013913.1 MGP_C57BL6NJ_G0011958.1 mouse_genomes_project 2 71869811 71870436 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054725.1 MGP_C57BL6NJ_G0026050.1 mouse_genomes_project 2 32670535 32702196 + MGP_C57BL6NJ_P0054725 Angptl2 protein_coding protein_coding MGP_C57BL6NJ_T0054726.1 MGP_C57BL6NJ_G0026050.1 mouse_genomes_project 2 32670539 32698998 + Angptl2 protein_coding retained_intron MGP_C57BL6NJ_T0054727.1 MGP_C57BL6NJ_G0026050.1 mouse_genomes_project 2 32670564 32684591 + Angptl2 protein_coding retained_intron MGP_C57BL6NJ_T0054728.1 MGP_C57BL6NJ_G0026050.1 mouse_genomes_project 2 32670583 32696872 + MGP_C57BL6NJ_P0054728 Angptl2 protein_coding protein_coding MGP_C57BL6NJ_T0004333.1 MGP_C57BL6NJ_G0003820.1 mouse_genomes_project 2 184705534 184707265 + Pmepa1os antisense antisense MGP_C57BL6NJ_T0057191.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334227 122542284 - MGP_C57BL6NJ_P0057191 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057192.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334227 122541492 - MGP_C57BL6NJ_P0057192 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057193.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334227 122542284 - MGP_C57BL6NJ_P0057193 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057194.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334227 122541492 - MGP_C57BL6NJ_P0057194 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057195.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334308 122541166 - MGP_C57BL6NJ_P0057195 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057196.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122334463 122540959 - MGP_C57BL6NJ_P0057196 Meis2 protein_coding protein_coding MGP_C57BL6NJ_T0057197.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122335067 122344107 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057198.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122335390 122340031 - Meis2 protein_coding retained_intron MGP_C57BL6NJ_T0057199.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122335436 122517121 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057200.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122335481 122344018 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057201.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122335622 122344107 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057202.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122336033 122344126 - Meis2 protein_coding retained_intron MGP_C57BL6NJ_T0057203.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122338039 122344110 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057204.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122395005 122524751 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057205.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122470662 122538660 - Meis2 protein_coding retained_intron MGP_C57BL6NJ_T0057206.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122513691 122524283 - Meis2 protein_coding retained_intron MGP_C57BL6NJ_T0057207.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122524154 122540939 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057208.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122524154 122538830 - Meis2 protein_coding processed_transcript MGP_C57BL6NJ_T0057209.1 MGP_C57BL6NJ_G0026727.1 mouse_genomes_project 2 122524177 122535147 - Meis2 protein_coding retained_intron MGP_C57BL6NJ_T0101539.1 MGP_C57BL6NJ_G0039585.1 mouse_genomes_project 2 168301716 168301848 - Gm23925 snoRNA snoRNA MGP_C57BL6NJ_T0056275.1 MGP_C57BL6NJ_G0026442.1 mouse_genomes_project 2 91704742 91705675 - MGP_C57BL6NJ_P0056275 Olfr1137 protein_coding protein_coding MGP_C57BL6NJ_T0057281.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125577943 125599768 + MGP_C57BL6NJ_P0057281 Ivd protein_coding protein_coding MGP_C57BL6NJ_T0057282.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125578017 125586624 + Ivd protein_coding retained_intron MGP_C57BL6NJ_T0057283.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125587604 125588499 + Ivd protein_coding processed_transcript MGP_C57BL6NJ_T0057284.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125588524 125593274 + Ivd protein_coding processed_transcript MGP_C57BL6NJ_T0057285.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125589045 125591040 + Ivd protein_coding retained_intron MGP_C57BL6NJ_T0057286.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125590585 125597438 + Ivd protein_coding processed_transcript MGP_C57BL6NJ_T0057287.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125591985 125597874 + Ivd protein_coding processed_transcript MGP_C57BL6NJ_T0057288.1 MGP_C57BL6NJ_G0026746.1 mouse_genomes_project 2 125592740 125594759 + Ivd protein_coding processed_transcript MGP_C57BL6NJ_T0013896.1 MGP_C57BL6NJ_G0011941.1 mouse_genomes_project 2 63464681 63465000 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057776.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131311976 131366627 + Sema6d protein_coding retained_intron MGP_C57BL6NJ_T0057777.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131311976 131914638 + MGP_C57BL6NJ_P0057777 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057778.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131366278 131747523 + Sema6d protein_coding processed_transcript MGP_C57BL6NJ_T0057779.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131854537 131908283 + Sema6d protein_coding retained_intron MGP_C57BL6NJ_T0057780.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131854727 131914638 + MGP_C57BL6NJ_P0057780 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057781.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131854727 131911355 + MGP_C57BL6NJ_P0057781 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057782.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131854727 131914638 + MGP_C57BL6NJ_P0057782 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057783.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131854727 131914638 + MGP_C57BL6NJ_P0057783 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057784.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131855032 131911355 + MGP_C57BL6NJ_P0057784 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0057785.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131898812 131912750 + MGP_C57BL6NJ_P0057785 Sema6d protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057786.1 MGP_C57BL6NJ_G0026843.1 mouse_genomes_project 2 131899032 131910707 + MGP_C57BL6NJ_P0057786 Sema6d protein_coding protein_coding MGP_C57BL6NJ_T0001187.1 MGP_C57BL6NJ_G0001093.1 mouse_genomes_project 2 13404135 13405877 + TEC TEC MGP_C57BL6NJ_T0056375.1 MGP_C57BL6NJ_G0026526.1 mouse_genomes_project 2 94019844 94022206 - MGP_C57BL6NJ_P0056375 Olfr1251 protein_coding protein_coding MGP_C57BL6NJ_T0007430.1 MGP_C57BL6NJ_G0006094.1 mouse_genomes_project 2 96676625 96681006 - 2900072N19Rik lincRNA lincRNA MGP_C57BL6NJ_T0013806.1 MGP_C57BL6NJ_G0011851.1 mouse_genomes_project 2 31806811 31807370 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053088.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11383016 11383923 + MGP_C57BL6NJ_P0053088 Vim protein_coding protein_coding MGP_C57BL6NJ_T0053089.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11383041 11391785 + MGP_C57BL6NJ_P0053089 Vim protein_coding protein_coding MGP_C57BL6NJ_T0053090.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11383370 11391784 + MGP_C57BL6NJ_P0053090 Vim protein_coding protein_coding MGP_C57BL6NJ_T0053091.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11383411 11387694 + Vim protein_coding retained_intron MGP_C57BL6NJ_T0053092.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11383612 11386538 + Vim protein_coding retained_intron MGP_C57BL6NJ_T0053093.1 MGP_C57BL6NJ_G0025772.1 mouse_genomes_project 2 11388327 11391437 + Vim protein_coding retained_intron MGP_C57BL6NJ_T0054810.1 MGP_C57BL6NJ_G0026062.1 mouse_genomes_project 2 34459986 34467805 + Cutal protein_coding retained_intron MGP_C57BL6NJ_T0054811.1 MGP_C57BL6NJ_G0026062.1 mouse_genomes_project 2 34460053 34475664 + MGP_C57BL6NJ_P0054811 Cutal protein_coding protein_coding MGP_C57BL6NJ_T0007321.1 MGP_C57BL6NJ_G0006006.1 mouse_genomes_project 2 19453817 19479021 + Gm13376 lincRNA lincRNA MGP_C57BL6NJ_T0004176.1 MGP_C57BL6NJ_G0003706.1 mouse_genomes_project 2 80214762 80215781 + antisense antisense MGP_C57BL6NJ_T0099081.1 MGP_C57BL6NJ_G0037145.1 mouse_genomes_project 2 127537802 127537927 - n-R5s205 rRNA rRNA MGP_C57BL6NJ_T0053937.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26014923 26060599 - Sardh protein_coding processed_transcript MGP_C57BL6NJ_T0053938.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26014923 26075823 - MGP_C57BL6NJ_P0053938 Sardh protein_coding protein_coding MGP_C57BL6NJ_T0053939.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26015727 26018791 - Sardh protein_coding retained_intron MGP_C57BL6NJ_T0053940.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26015912 26036725 - Sardh protein_coding processed_transcript MGP_C57BL6NJ_T0053941.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26023238 26046433 - Sardh protein_coding retained_intron MGP_C57BL6NJ_T0053942.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26037836 26042413 - Sardh protein_coding processed_transcript MGP_C57BL6NJ_T0053943.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26037872 26053098 - Sardh protein_coding retained_intron MGP_C57BL6NJ_T0053944.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26070079 26075405 - MGP_C57BL6NJ_P0053944 Sardh protein_coding protein_coding MGP_C57BL6NJ_T0053945.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26070097 26076894 - MGP_C57BL6NJ_P0053945 Sardh protein_coding protein_coding MGP_C57BL6NJ_T0053946.1 MGP_C57BL6NJ_G0025929.1 mouse_genomes_project 2 26072896 26075971 - MGP_C57BL6NJ_P0053946 Sardh protein_coding protein_coding MGP_C57BL6NJ_T0056697.1 MGP_C57BL6NJ_G0026591.1 mouse_genomes_project 2 97267409 97288102 + MGP_C57BL6NJ_P0056697 Chst1 protein_coding protein_coding MGP_C57BL6NJ_T0007579.1 MGP_C57BL6NJ_G0006215.1 mouse_genomes_project 2 180038477 180039838 + Gm9873 lincRNA lincRNA MGP_C57BL6NJ_T0007580.1 MGP_C57BL6NJ_G0006215.1 mouse_genomes_project 2 180038722 180039819 + Gm9873 lincRNA lincRNA MGP_C57BL6NJ_T0060210.1 MGP_C57BL6NJ_G0027429.1 mouse_genomes_project 2 192980630 193010405 + MGP_C57BL6NJ_P0060210 Col20a1 protein_coding protein_coding MGP_C57BL6NJ_T0060211.1 MGP_C57BL6NJ_G0027429.1 mouse_genomes_project 2 192980630 193011617 + MGP_C57BL6NJ_P0060211 Col20a1 protein_coding protein_coding MGP_C57BL6NJ_T0060212.1 MGP_C57BL6NJ_G0027429.1 mouse_genomes_project 2 192983162 193011622 + MGP_C57BL6NJ_P0060212 Col20a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060213.1 MGP_C57BL6NJ_G0027429.1 mouse_genomes_project 2 192994539 192997544 + MGP_C57BL6NJ_P0060213 Col20a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060214.1 MGP_C57BL6NJ_G0027429.1 mouse_genomes_project 2 193007326 193011617 + MGP_C57BL6NJ_P0060214 Col20a1 protein_coding protein_coding MGP_C57BL6NJ_T0052996.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376869 9411254 + MGP_C57BL6NJ_P0052996 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0052997.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376908 9410562 + Il15ra protein_coding processed_transcript MGP_C57BL6NJ_T0052998.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376928 9410899 + MGP_C57BL6NJ_P0052998 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0052999.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376948 9410905 + MGP_C57BL6NJ_P0052999 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053000.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376954 9395503 + Il15ra protein_coding retained_intron MGP_C57BL6NJ_T0053001.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9376966 9410905 + Il15ra protein_coding processed_transcript MGP_C57BL6NJ_T0053002.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377022 9410919 + MGP_C57BL6NJ_P0053002 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053003.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377131 9410338 + Il15ra protein_coding processed_transcript MGP_C57BL6NJ_T0053004.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377291 9397042 + MGP_C57BL6NJ_P0053004 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053005.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377338 9397329 + Il15ra protein_coding retained_intron MGP_C57BL6NJ_T0053006.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377356 9410923 + MGP_C57BL6NJ_P0053006 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053007.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377389 9410338 + MGP_C57BL6NJ_P0053007 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053008.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377389 9411254 + MGP_C57BL6NJ_P0053008 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053009.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377390 9410338 + MGP_C57BL6NJ_P0053009 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053010.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9377427 9410186 + MGP_C57BL6NJ_P0053010 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053011.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9395263 9397223 + Il15ra protein_coding retained_intron MGP_C57BL6NJ_T0053012.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9395367 9410354 + MGP_C57BL6NJ_P0053012 Il15ra protein_coding protein_coding MGP_C57BL6NJ_T0053013.1 MGP_C57BL6NJ_G0025762.1 mouse_genomes_project 2 9400100 9410905 + Il15ra protein_coding retained_intron MGP_C57BL6NJ_T0058720.1 MGP_C57BL6NJ_G0027073.1 mouse_genomes_project 2 161072158 161083885 + MGP_C57BL6NJ_P0058720 Slc52a3 protein_coding protein_coding MGP_C57BL6NJ_T0057598.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128145143 128163838 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057599.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128146700 128226921 - MGP_C57BL6NJ_P0057599 Trp53bp1 protein_coding protein_coding MGP_C57BL6NJ_T0057600.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128146700 128226855 - MGP_C57BL6NJ_P0057600 Trp53bp1 protein_coding protein_coding MGP_C57BL6NJ_T0057601.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128150113 128188682 - MGP_C57BL6NJ_P0057601 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057602.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128151501 128156844 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057603.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128154555 128159625 - MGP_C57BL6NJ_P0057603 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057604.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128156943 128160437 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057605.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128160282 128173114 - MGP_C57BL6NJ_P0057605 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057606.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128160707 128173105 - Trp53bp1 protein_coding retained_intron MGP_C57BL6NJ_T0057607.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128163170 128170309 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057608.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128167761 128173252 - Trp53bp1 protein_coding retained_intron MGP_C57BL6NJ_T0057609.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128168015 128226835 - MGP_C57BL6NJ_P0057609 Trp53bp1 protein_coding protein_coding MGP_C57BL6NJ_T0057610.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128181060 128188365 - MGP_C57BL6NJ_P0057610 Trp53bp1 protein_coding protein_coding MGP_C57BL6NJ_T0057611.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128184775 128188497 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057612.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128189499 128205440 - MGP_C57BL6NJ_P0057612 Trp53bp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057613.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128209926 128226883 - Trp53bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057614.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128213819 128224694 - Trp53bp1 protein_coding retained_intron MGP_C57BL6NJ_T0057615.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128221719 128226875 - Trp53bp1 protein_coding retained_intron MGP_C57BL6NJ_T0057616.1 MGP_C57BL6NJ_G0026806.1 mouse_genomes_project 2 128224037 128226884 - Trp53bp1 protein_coding retained_intron MGP_C57BL6NJ_T0053365.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22934896 23007572 - MGP_C57BL6NJ_P0053365 Pax8 protein_coding protein_coding MGP_C57BL6NJ_T0053366.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22935730 22937419 - Pax8 protein_coding retained_intron MGP_C57BL6NJ_T0053367.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22935856 23007070 - MGP_C57BL6NJ_P0053367 Pax8 protein_coding protein_coding MGP_C57BL6NJ_T0053368.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22935867 23007537 - MGP_C57BL6NJ_P0053368 Pax8 protein_coding protein_coding MGP_C57BL6NJ_T0053369.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22943835 23007547 - MGP_C57BL6NJ_P0053369 Pax8 protein_coding protein_coding MGP_C57BL6NJ_T0053370.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22967105 23007188 - MGP_C57BL6NJ_P0053370 Pax8 protein_coding protein_coding MGP_C57BL6NJ_T0053371.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 22968926 22971829 - Pax8 protein_coding processed_transcript MGP_C57BL6NJ_T0053372.1 MGP_C57BL6NJ_G0025827.1 mouse_genomes_project 2 23003858 23007547 - Pax8 protein_coding retained_intron MGP_C57BL6NJ_T0058918.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163950448 163964860 - MGP_C57BL6NJ_P0058918 Necab3 protein_coding protein_coding MGP_C57BL6NJ_T0058919.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163950448 163964875 - MGP_C57BL6NJ_P0058919 Necab3 protein_coding protein_coding MGP_C57BL6NJ_T0058920.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163951094 163952844 - Necab3 protein_coding retained_intron MGP_C57BL6NJ_T0058921.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163953095 163964899 - MGP_C57BL6NJ_P0058921 Necab3 protein_coding protein_coding MGP_C57BL6NJ_T0058923.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163953190 163964853 - Necab3 protein_coding processed_transcript MGP_C57BL6NJ_T0058927.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163960299 163964861 - Necab3 protein_coding retained_intron MGP_C57BL6NJ_T0058928.1 MGP_C57BL6NJ_G0027140.1 mouse_genomes_project 2 163960677 163963288 - Necab3 protein_coding retained_intron MGP_C57BL6NJ_T0058759.1 MGP_C57BL6NJ_G0027090.1 mouse_genomes_project 2 161669666 161671051 - MGP_C57BL6NJ_P0058759 Defb29 protein_coding protein_coding MGP_C57BL6NJ_T0054561.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31776702 31779792 - Lcn2 protein_coding processed_transcript MGP_C57BL6NJ_T0054562.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31776702 31779867 - MGP_C57BL6NJ_P0054562 Lcn2 protein_coding protein_coding MGP_C57BL6NJ_T0054563.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31776708 31778069 - Lcn2 protein_coding retained_intron MGP_C57BL6NJ_T0054564.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31777252 31778177 - Lcn2 protein_coding retained_intron MGP_C57BL6NJ_T0054565.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31777514 31780907 - MGP_C57BL6NJ_P0054565 Lcn2 protein_coding protein_coding MGP_C57BL6NJ_T0054566.1 MGP_C57BL6NJ_G0026023.1 mouse_genomes_project 2 31778625 31779829 - Lcn2 protein_coding retained_intron MGP_C57BL6NJ_T0001186.1 MGP_C57BL6NJ_G0001092.1 mouse_genomes_project 2 12905181 12907942 + TEC TEC MGP_C57BL6NJ_T0060283.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193373737 193383474 - MGP_C57BL6NJ_P0060283 Arfrp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060284.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193373793 193376049 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0060285.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375223 193383466 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0060286.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375336 193383452 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0060287.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375382 193383463 - MGP_C57BL6NJ_P0060287 Arfrp1 protein_coding protein_coding MGP_C57BL6NJ_T0060288.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375410 193382943 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0060289.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375617 193383493 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0060290.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193375623 193383470 - MGP_C57BL6NJ_P0060290 Arfrp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060291.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193377357 193383399 - Arfrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0060292.1 MGP_C57BL6NJ_G0027441.1 mouse_genomes_project 2 193382421 193383483 - Arfrp1 protein_coding retained_intron MGP_C57BL6NJ_T0013815.1 MGP_C57BL6NJ_G0011860.1 mouse_genomes_project 2 35801066 35801431 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054367.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30226126 30271952 + MGP_C57BL6NJ_P0054367 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054368.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30226181 30228082 + Usp20 protein_coding retained_intron MGP_C57BL6NJ_T0054369.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30226210 30255960 + MGP_C57BL6NJ_P0054369 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054370.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30226244 30251315 + MGP_C57BL6NJ_P0054370 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054371.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30226276 30247717 + MGP_C57BL6NJ_P0054371 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054372.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30243607 30250984 + MGP_C57BL6NJ_P0054372 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054373.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30243708 30251315 + MGP_C57BL6NJ_P0054373 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054374.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30243994 30271948 + MGP_C57BL6NJ_P0054374 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054375.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30244000 30254761 + Usp20 protein_coding processed_transcript MGP_C57BL6NJ_T0054376.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30246452 30254790 + MGP_C57BL6NJ_P0054376 Usp20 protein_coding protein_coding MGP_C57BL6NJ_T0054377.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30250926 30252092 + Usp20 protein_coding retained_intron MGP_C57BL6NJ_T0054378.1 MGP_C57BL6NJ_G0025999.1 mouse_genomes_project 2 30268184 30269747 + Usp20 protein_coding retained_intron MGP_C57BL6NJ_T0057750.1 MGP_C57BL6NJ_G0026837.1 mouse_genomes_project 2 129614377 129615925 + protein_coding retained_intron MGP_C57BL6NJ_T0014077.1 MGP_C57BL6NJ_G0012122.1 mouse_genomes_project 2 132345327 132345427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057562.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127962775 127981957 - MGP_C57BL6NJ_P0057562 Epb42 protein_coding protein_coding MGP_C57BL6NJ_T0057563.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127963106 127972145 - Epb42 protein_coding processed_transcript MGP_C57BL6NJ_T0057564.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127963106 127967691 - Epb42 protein_coding processed_transcript MGP_C57BL6NJ_T0057565.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127964292 127966901 - Epb42 protein_coding retained_intron MGP_C57BL6NJ_T0057566.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127968534 127981720 - MGP_C57BL6NJ_P0057566 Epb42 protein_coding protein_coding MGP_C57BL6NJ_T0057567.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127972591 127981566 - Epb42 protein_coding processed_transcript MGP_C57BL6NJ_T0057568.1 MGP_C57BL6NJ_G0026799.1 mouse_genomes_project 2 127978288 127981630 - Epb42 protein_coding processed_transcript MGP_C57BL6NJ_T0010568.1 MGP_C57BL6NJ_G0008653.1 mouse_genomes_project 2 8042266 8042352 + Mir669d-2 miRNA miRNA MGP_C57BL6NJ_T0001225.1 MGP_C57BL6NJ_G0001131.1 mouse_genomes_project 2 134642958 134643564 - TEC TEC MGP_C57BL6NJ_T0001226.1 MGP_C57BL6NJ_G0001131.1 mouse_genomes_project 2 134643218 134643542 - TEC TEC MGP_C57BL6NJ_T0055479.1 MGP_C57BL6NJ_G0026197.1 mouse_genomes_project 2 67190299 67314001 - MGP_C57BL6NJ_P0055479 protein_coding protein_coding MGP_C57BL6NJ_T0055480.1 MGP_C57BL6NJ_G0026197.1 mouse_genomes_project 2 67191444 67314136 - MGP_C57BL6NJ_P0055480 protein_coding protein_coding MGP_C57BL6NJ_T0055481.1 MGP_C57BL6NJ_G0026197.1 mouse_genomes_project 2 67226801 67234623 - protein_coding processed_transcript MGP_C57BL6NJ_T0055482.1 MGP_C57BL6NJ_G0026197.1 mouse_genomes_project 2 67266152 67270796 - MGP_C57BL6NJ_P0055482 protein_coding protein_coding MGP_C57BL6NJ_T0018208.1 MGP_C57BL6NJ_G0015793.1 mouse_genomes_project 2 24465433 24477401 - Gm13538 processed_transcript processed_transcript MGP_C57BL6NJ_T0053684.1 MGP_C57BL6NJ_G0025881.1 mouse_genomes_project 2 24345377 24350200 + MGP_C57BL6NJ_P0053684 Lcn6 protein_coding protein_coding MGP_C57BL6NJ_T0053685.1 MGP_C57BL6NJ_G0025881.1 mouse_genomes_project 2 24347857 24350197 + MGP_C57BL6NJ_P0053685 Lcn6 protein_coding protein_coding MGP_C57BL6NJ_T0053686.1 MGP_C57BL6NJ_G0025881.1 mouse_genomes_project 2 24348552 24350193 + MGP_C57BL6NJ_P0053686 Lcn6 protein_coding protein_coding MGP_C57BL6NJ_T0053687.1 MGP_C57BL6NJ_G0025881.1 mouse_genomes_project 2 24348704 24350193 + Lcn6 protein_coding processed_transcript MGP_C57BL6NJ_T0057139.1 MGP_C57BL6NJ_G0026711.1 mouse_genomes_project 2 118632205 118670760 + MGP_C57BL6NJ_P0057139 Katnbl1 protein_coding protein_coding MGP_C57BL6NJ_T0057140.1 MGP_C57BL6NJ_G0026711.1 mouse_genomes_project 2 118632220 118661651 + Katnbl1 protein_coding retained_intron MGP_C57BL6NJ_T0014082.1 MGP_C57BL6NJ_G0012127.1 mouse_genomes_project 2 136025964 136026945 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014088.1 MGP_C57BL6NJ_G0012133.1 mouse_genomes_project 2 137674938 137676258 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053698.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24549929 24603109 + MGP_C57BL6NJ_P0053698 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053699.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24549990 24575006 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0053700.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24550049 24602181 + MGP_C57BL6NJ_P0053700 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053701.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24550163 24602181 + MGP_C57BL6NJ_P0053701 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053702.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563847 24603627 + MGP_C57BL6NJ_P0053702 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053703.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563921 24581239 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0053704.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563927 24602675 + MGP_C57BL6NJ_P0053704 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053705.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563934 24603144 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0053706.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563937 24604337 + MGP_C57BL6NJ_P0053706 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053707.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24563945 24602181 + MGP_C57BL6NJ_P0053707 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053708.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24580406 24602656 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0053709.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24586954 24589459 + MGP_C57BL6NJ_P0053709 Kcnt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053710.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24589565 24595973 + MGP_C57BL6NJ_P0053710 Kcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0053711.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24594126 24602987 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0053712.1 MGP_C57BL6NJ_G0025891.1 mouse_genomes_project 2 24596957 24602304 + Kcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0057901.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134466326 134498940 - MGP_C57BL6NJ_P0057901 Ncaph protein_coding protein_coding MGP_C57BL6NJ_T0057902.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134466344 134477133 - Ncaph protein_coding retained_intron MGP_C57BL6NJ_T0057903.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134466467 134498888 - MGP_C57BL6NJ_P0057903 Ncaph protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057904.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134471098 134479345 - Ncaph protein_coding retained_intron MGP_C57BL6NJ_T0057905.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134485898 134487036 - Ncaph protein_coding retained_intron MGP_C57BL6NJ_T0057906.1 MGP_C57BL6NJ_G0026870.1 mouse_genomes_project 2 134492646 134498883 - Ncaph protein_coding processed_transcript MGP_C57BL6NJ_T0001179.1 MGP_C57BL6NJ_G0001085.1 mouse_genomes_project 2 12439741 12442362 + TEC TEC MGP_C57BL6NJ_T0004089.1 MGP_C57BL6NJ_G0003641.1 mouse_genomes_project 2 28949025 28950620 - 2600006K01Rik antisense antisense MGP_C57BL6NJ_T0059693.1 MGP_C57BL6NJ_G0027311.1 mouse_genomes_project 2 175593062 175725317 - MGP_C57BL6NJ_P0059693 Cdh22 protein_coding protein_coding MGP_C57BL6NJ_T0059694.1 MGP_C57BL6NJ_G0027311.1 mouse_genomes_project 2 175593882 175665109 - MGP_C57BL6NJ_P0059694 Cdh22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056327.1 MGP_C57BL6NJ_G0026490.1 mouse_genomes_project 2 93146145 93147069 + MGP_C57BL6NJ_P0056327 Olfr1206 protein_coding protein_coding MGP_C57BL6NJ_T0058260.1 MGP_C57BL6NJ_G0026954.1 mouse_genomes_project 2 139546602 139552394 - MGP_C57BL6NJ_P0058260 Erv3 protein_coding protein_coding MGP_C57BL6NJ_T0100179.1 MGP_C57BL6NJ_G0038225.1 mouse_genomes_project 2 23805766 23805871 + Gm22572 snRNA snRNA MGP_C57BL6NJ_T0101525.1 MGP_C57BL6NJ_G0039571.1 mouse_genomes_project 2 152793717 152793855 - Gm26165 snoRNA snoRNA MGP_C57BL6NJ_T0013942.1 MGP_C57BL6NJ_G0011987.1 mouse_genomes_project 2 82044956 82045523 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054880.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35203328 35380163 + MGP_C57BL6NJ_P0054880 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054881.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35227894 35380161 + MGP_C57BL6NJ_P0054881 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054882.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35267015 35380161 + MGP_C57BL6NJ_P0054882 Dab2ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054883.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35267155 35377391 + MGP_C57BL6NJ_P0054883 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054884.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35267194 35380161 + MGP_C57BL6NJ_P0054884 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054885.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35308837 35380163 + MGP_C57BL6NJ_P0054885 Dab2ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054886.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35308915 35359099 + Dab2ip protein_coding processed_transcript MGP_C57BL6NJ_T0054887.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35341155 35380161 + MGP_C57BL6NJ_P0054887 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054888.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35341494 35378113 + MGP_C57BL6NJ_P0054888 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0054889.1 MGP_C57BL6NJ_G0026074.1 mouse_genomes_project 2 35359492 35380163 + MGP_C57BL6NJ_P0054889 Dab2ip protein_coding protein_coding MGP_C57BL6NJ_T0053209.1 MGP_C57BL6NJ_G0025793.1 mouse_genomes_project 2 16828063 16833034 + Spag6 protein_coding processed_transcript MGP_C57BL6NJ_T0053210.1 MGP_C57BL6NJ_G0025793.1 mouse_genomes_project 2 16828083 16833187 + Spag6 protein_coding processed_transcript MGP_C57BL6NJ_T0053211.1 MGP_C57BL6NJ_G0025793.1 mouse_genomes_project 2 16833172 16889743 + MGP_C57BL6NJ_P0053211 Spag6 protein_coding protein_coding MGP_C57BL6NJ_T0053212.1 MGP_C57BL6NJ_G0025793.1 mouse_genomes_project 2 16833233 16868236 + MGP_C57BL6NJ_P0053212 Spag6 protein_coding protein_coding MGP_C57BL6NJ_T0056116.1 MGP_C57BL6NJ_G0026330.1 mouse_genomes_project 2 88174417 88177634 + MGP_C57BL6NJ_P0056116 Timm10 protein_coding protein_coding MGP_C57BL6NJ_T0056117.1 MGP_C57BL6NJ_G0026330.1 mouse_genomes_project 2 88174804 88177534 + MGP_C57BL6NJ_P0056117 Timm10 protein_coding protein_coding MGP_C57BL6NJ_T0007336.1 MGP_C57BL6NJ_G0006017.1 mouse_genomes_project 2 27007301 27039552 + F730016J06Rik lincRNA lincRNA MGP_C57BL6NJ_T0007337.1 MGP_C57BL6NJ_G0006017.1 mouse_genomes_project 2 27007307 27025668 + F730016J06Rik lincRNA lincRNA MGP_C57BL6NJ_T0007338.1 MGP_C57BL6NJ_G0006017.1 mouse_genomes_project 2 27030023 27037024 + F730016J06Rik lincRNA lincRNA MGP_C57BL6NJ_T0014143.1 MGP_C57BL6NJ_G0012188.1 mouse_genomes_project 2 159365371 159366503 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010666.1 MGP_C57BL6NJ_G0008751.1 mouse_genomes_project 2 98158270 98158349 - Mir7001 miRNA miRNA MGP_C57BL6NJ_T0058451.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152459841 152464728 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058452.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152459841 152529774 - MGP_C57BL6NJ_P0058452 Rrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0058453.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152460574 152462183 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058454.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152462938 152467629 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058455.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152468829 152470092 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058456.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152476018 152482906 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058457.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152480151 152500278 - Rrbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0058458.1 MGP_C57BL6NJ_G0027000.1 mouse_genomes_project 2 152502965 152529774 - MGP_C57BL6NJ_P0058458 Rrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0102222.1 MGP_C57BL6NJ_G0040225.1 mouse_genomes_project 2 138431942 138432424 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0010582.1 MGP_C57BL6NJ_G0008667.1 mouse_genomes_project 2 8063332 8063436 + Gm24342 miRNA miRNA MGP_C57BL6NJ_T0058875.1 MGP_C57BL6NJ_G0027127.1 mouse_genomes_project 2 163252777 163267544 + MGP_C57BL6NJ_P0058875 Bpifb3 protein_coding protein_coding MGP_C57BL6NJ_T0058876.1 MGP_C57BL6NJ_G0027127.1 mouse_genomes_project 2 163252941 163267541 + MGP_C57BL6NJ_P0058876 Bpifb3 protein_coding protein_coding MGP_C57BL6NJ_T0053217.1 MGP_C57BL6NJ_G0025796.1 mouse_genomes_project 2 17386347 17498474 + MGP_C57BL6NJ_P0053217 Armc3 protein_coding protein_coding MGP_C57BL6NJ_T0053218.1 MGP_C57BL6NJ_G0025796.1 mouse_genomes_project 2 17386347 17498474 + MGP_C57BL6NJ_P0053218 Armc3 protein_coding protein_coding MGP_C57BL6NJ_T0054113.1 MGP_C57BL6NJ_G0025962.1 mouse_genomes_project 2 28877937 28894971 + MGP_C57BL6NJ_P0054113 Slc27a4 protein_coding protein_coding MGP_C57BL6NJ_T0054114.1 MGP_C57BL6NJ_G0025962.1 mouse_genomes_project 2 28882301 28887917 + Slc27a4 protein_coding processed_transcript MGP_C57BL6NJ_T0059094.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165591727 165602000 + MGP_C57BL6NJ_P0059094 Ergic3 protein_coding protein_coding MGP_C57BL6NJ_T0059095.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165591788 165602000 + MGP_C57BL6NJ_P0059095 Ergic3 protein_coding protein_coding MGP_C57BL6NJ_T0059096.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165591905 165594916 + Ergic3 protein_coding retained_intron MGP_C57BL6NJ_T0059097.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165592301 165601359 + MGP_C57BL6NJ_P0059097 Ergic3 protein_coding protein_coding MGP_C57BL6NJ_T0059098.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165594129 165601808 + MGP_C57BL6NJ_P0059098 Ergic3 protein_coding protein_coding MGP_C57BL6NJ_T0059099.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165600229 165601871 + Ergic3 protein_coding processed_transcript MGP_C57BL6NJ_T0059100.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165600935 165601817 + Ergic3 protein_coding processed_transcript MGP_C57BL6NJ_T0059101.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165601214 165602000 + Ergic3 protein_coding retained_intron MGP_C57BL6NJ_T0059102.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165601266 165602000 + Ergic3 protein_coding retained_intron MGP_C57BL6NJ_T0059103.1 MGP_C57BL6NJ_G0027176.1 mouse_genomes_project 2 165601368 165601998 + Ergic3 protein_coding retained_intron MGP_C57BL6NJ_T0007299.1 MGP_C57BL6NJ_G0005989.1 mouse_genomes_project 2 3749113 3755733 + Gm13391 lincRNA lincRNA MGP_C57BL6NJ_T0007300.1 MGP_C57BL6NJ_G0005989.1 mouse_genomes_project 2 3749384 3750225 + Gm13391 lincRNA lincRNA MGP_C57BL6NJ_T0014136.1 MGP_C57BL6NJ_G0012181.1 mouse_genomes_project 2 156403936 156404374 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013996.1 MGP_C57BL6NJ_G0012041.1 mouse_genomes_project 2 98559380 98559891 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058894.1 MGP_C57BL6NJ_G0027134.1 mouse_genomes_project 2 163532062 163561544 + MGP_C57BL6NJ_P0058894 Bpifb1 protein_coding protein_coding MGP_C57BL6NJ_T0058895.1 MGP_C57BL6NJ_G0027134.1 mouse_genomes_project 2 163532067 163561517 + Bpifb1 protein_coding retained_intron MGP_C57BL6NJ_T0058896.1 MGP_C57BL6NJ_G0027134.1 mouse_genomes_project 2 163541609 163561518 + MGP_C57BL6NJ_P0058896 Bpifb1 protein_coding protein_coding MGP_C57BL6NJ_T0054408.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30589980 30743724 + MGP_C57BL6NJ_P0054408 Hmcn2 protein_coding protein_coding MGP_C57BL6NJ_T0054409.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30589980 30743381 + MGP_C57BL6NJ_P0054409 Hmcn2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0054410.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30679288 30684826 + MGP_C57BL6NJ_P0054410 Hmcn2 protein_coding protein_coding MGP_C57BL6NJ_T0054411.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30720924 30743710 + Hmcn2 protein_coding retained_intron MGP_C57BL6NJ_T0054412.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30729600 30743723 + Hmcn2 protein_coding processed_transcript MGP_C57BL6NJ_T0054413.1 MGP_C57BL6NJ_G0026003.1 mouse_genomes_project 2 30737687 30740975 + Hmcn2 protein_coding retained_intron MGP_C57BL6NJ_T0014051.1 MGP_C57BL6NJ_G0012096.1 mouse_genomes_project 2 117901348 117901504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007599.1 MGP_C57BL6NJ_G0006232.1 mouse_genomes_project 2 186421348 186434048 - Gm14618 lincRNA lincRNA MGP_C57BL6NJ_T0007393.1 MGP_C57BL6NJ_G0006064.1 mouse_genomes_project 2 74298606 74299922 + Gm13746 lincRNA lincRNA MGP_C57BL6NJ_T0058066.1 MGP_C57BL6NJ_G0026915.1 mouse_genomes_project 2 137690641 137734947 + Tgm6 protein_coding processed_transcript MGP_C57BL6NJ_T0058067.1 MGP_C57BL6NJ_G0026915.1 mouse_genomes_project 2 137701442 137734947 + Tgm6 protein_coding processed_transcript MGP_C57BL6NJ_T0058068.1 MGP_C57BL6NJ_G0026915.1 mouse_genomes_project 2 137701442 137734947 + MGP_C57BL6NJ_P0058068 Tgm6 protein_coding protein_coding MGP_C57BL6NJ_T0054927.1 MGP_C57BL6NJ_G0026086.1 mouse_genomes_project 2 36181634 36182573 + MGP_C57BL6NJ_P0054927 Olfr342 protein_coding protein_coding MGP_C57BL6NJ_T0056531.1 MGP_C57BL6NJ_G0026566.1 mouse_genomes_project 2 95778699 95784125 + MGP_C57BL6NJ_P0056531 Acp2 protein_coding protein_coding MGP_C57BL6NJ_T0056532.1 MGP_C57BL6NJ_G0026566.1 mouse_genomes_project 2 95778723 95789852 + MGP_C57BL6NJ_P0056532 Acp2 protein_coding protein_coding MGP_C57BL6NJ_T0056533.1 MGP_C57BL6NJ_G0026566.1 mouse_genomes_project 2 95778738 95787896 + Acp2 protein_coding retained_intron MGP_C57BL6NJ_T0056534.1 MGP_C57BL6NJ_G0026566.1 mouse_genomes_project 2 95778738 95781858 + MGP_C57BL6NJ_P0056534 Acp2 protein_coding protein_coding MGP_C57BL6NJ_T0056535.1 MGP_C57BL6NJ_G0026566.1 mouse_genomes_project 2 95778742 95779469 + Acp2 protein_coding processed_transcript MGP_C57BL6NJ_T0059401.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170745405 170835650 + MGP_C57BL6NJ_P0059401 Top1 protein_coding protein_coding MGP_C57BL6NJ_T0059402.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170745497 170749625 + Top1 protein_coding processed_transcript MGP_C57BL6NJ_T0059403.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170779806 170796685 + Top1 protein_coding retained_intron MGP_C57BL6NJ_T0059404.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170797402 170806668 + Top1 protein_coding retained_intron MGP_C57BL6NJ_T0059405.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170815019 170816556 + Top1 protein_coding processed_transcript MGP_C57BL6NJ_T0059406.1 MGP_C57BL6NJ_G0027229.1 mouse_genomes_project 2 170830345 170834270 + Top1 protein_coding retained_intron MGP_C57BL6NJ_T0014024.1 MGP_C57BL6NJ_G0012069.1 mouse_genomes_project 2 109383556 109383838 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013878.1 MGP_C57BL6NJ_G0011923.1 mouse_genomes_project 2 59385449 59386061 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059368.1 MGP_C57BL6NJ_G0027219.1 mouse_genomes_project 2 168461464 168467049 + MGP_C57BL6NJ_P0059368 Adig protein_coding protein_coding MGP_C57BL6NJ_T0059369.1 MGP_C57BL6NJ_G0027219.1 mouse_genomes_project 2 168461505 168467049 + MGP_C57BL6NJ_P0059369 Adig protein_coding protein_coding MGP_C57BL6NJ_T0059370.1 MGP_C57BL6NJ_G0027219.1 mouse_genomes_project 2 168461591 168464761 + Adig protein_coding processed_transcript MGP_C57BL6NJ_T0007603.1 MGP_C57BL6NJ_G0006236.1 mouse_genomes_project 2 192775678 192783473 - Gm14340 lincRNA lincRNA MGP_C57BL6NJ_T0054720.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32586208 32834276 - MGP_C57BL6NJ_P0054720 Ralgps1 protein_coding protein_coding MGP_C57BL6NJ_T0054721.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32586212 32834328 - MGP_C57BL6NJ_P0054721 Ralgps1 protein_coding protein_coding MGP_C57BL6NJ_T0054722.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32586212 32834333 - MGP_C57BL6NJ_P0054722 Ralgps1 protein_coding protein_coding MGP_C57BL6NJ_T0054723.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32589764 32834325 - MGP_C57BL6NJ_P0054723 Ralgps1 protein_coding protein_coding MGP_C57BL6NJ_T0054724.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32596098 32611885 - Ralgps1 protein_coding processed_transcript MGP_C57BL6NJ_T0054729.1 MGP_C57BL6NJ_G0026049.1 mouse_genomes_project 2 32713946 32834317 - Ralgps1 protein_coding retained_intron MGP_C57BL6NJ_T0052755.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374221 387827 - MGP_C57BL6NJ_P0052755 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0052756.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374221 384198 - MGP_C57BL6NJ_P0052756 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0052757.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374224 384220 - MGP_C57BL6NJ_P0052757 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0052758.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374225 384308 - MGP_C57BL6NJ_P0052758 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0052759.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374288 383760 - MGP_C57BL6NJ_P0052759 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0052760.1 MGP_C57BL6NJ_G0025722.1 mouse_genomes_project 2 374445 387773 - MGP_C57BL6NJ_P0052760 Meig1 protein_coding protein_coding MGP_C57BL6NJ_T0059238.1 MGP_C57BL6NJ_G0027194.1 mouse_genomes_project 2 166517819 166528288 + MGP_C57BL6NJ_P0059238 1110008F13Rik protein_coding protein_coding MGP_C57BL6NJ_T0059239.1 MGP_C57BL6NJ_G0027194.1 mouse_genomes_project 2 166517830 166528123 + 1110008F13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0059240.1 MGP_C57BL6NJ_G0027194.1 mouse_genomes_project 2 166517836 166521679 + 1110008F13Rik protein_coding retained_intron MGP_C57BL6NJ_T0059242.1 MGP_C57BL6NJ_G0027194.1 mouse_genomes_project 2 166527266 166528121 + 1110008F13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0057535.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127647439 127771113 - MGP_C57BL6NJ_P0057535 Ttbk2 protein_coding protein_coding MGP_C57BL6NJ_T0057536.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127647439 127770927 - MGP_C57BL6NJ_P0057536 Ttbk2 protein_coding protein_coding MGP_C57BL6NJ_T0057537.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127647439 127770915 - MGP_C57BL6NJ_P0057537 Ttbk2 protein_coding protein_coding MGP_C57BL6NJ_T0057538.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127660294 127770899 - MGP_C57BL6NJ_P0057538 Ttbk2 protein_coding protein_coding MGP_C57BL6NJ_T0057539.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127664857 127770873 - MGP_C57BL6NJ_P0057539 Ttbk2 protein_coding protein_coding MGP_C57BL6NJ_T0057540.1 MGP_C57BL6NJ_G0026795.1 mouse_genomes_project 2 127706906 127770944 - Ttbk2 protein_coding processed_transcript MGP_C57BL6NJ_T0058488.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153081741 153096056 + MGP_C57BL6NJ_P0058488 Polr3f protein_coding protein_coding MGP_C57BL6NJ_T0058489.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153081765 153084719 + Polr3f protein_coding processed_transcript MGP_C57BL6NJ_T0058490.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153081771 153089234 + MGP_C57BL6NJ_P0058490 Polr3f protein_coding protein_coding MGP_C57BL6NJ_T0058491.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153081803 153088751 + Polr3f protein_coding processed_transcript MGP_C57BL6NJ_T0058492.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153086419 153092855 + Polr3f protein_coding processed_transcript MGP_C57BL6NJ_T0058493.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153090001 153090689 + Polr3f protein_coding processed_transcript MGP_C57BL6NJ_T0058494.1 MGP_C57BL6NJ_G0027008.1 mouse_genomes_project 2 153090236 153092955 + Polr3f protein_coding processed_transcript MGP_C57BL6NJ_T0100170.1 MGP_C57BL6NJ_G0038216.1 mouse_genomes_project 2 242609 242750 - Gm22005 snRNA snRNA MGP_C57BL6NJ_T0007588.1 MGP_C57BL6NJ_G0006222.1 mouse_genomes_project 2 181145888 181156610 - A630075F10Rik lincRNA lincRNA MGP_C57BL6NJ_T0100202.1 MGP_C57BL6NJ_G0038248.1 mouse_genomes_project 2 89392546 89392726 - Gm24037 snRNA snRNA MGP_C57BL6NJ_T0013777.1 MGP_C57BL6NJ_G0011822.1 mouse_genomes_project 2 19607117 19607453 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099369.1 MGP_C57BL6NJ_G0037427.1 mouse_genomes_project 2 4232846 4235387 - Gm10855 sense_intronic sense_intronic MGP_C57BL6NJ_T0058200.1 MGP_C57BL6NJ_G0026943.1 mouse_genomes_project 2 138780089 138780808 + MGP_C57BL6NJ_P0058200 Gm11037 protein_coding protein_coding MGP_C57BL6NJ_T0056867.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108931286 108973871 + MGP_C57BL6NJ_P0056867 Elf5 protein_coding protein_coding MGP_C57BL6NJ_T0056868.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108931311 108968200 + Elf5 protein_coding retained_intron MGP_C57BL6NJ_T0056869.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108943660 108973874 + MGP_C57BL6NJ_P0056869 Elf5 protein_coding protein_coding MGP_C57BL6NJ_T0056870.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108943724 108972726 + MGP_C57BL6NJ_P0056870 Elf5 protein_coding protein_coding MGP_C57BL6NJ_T0056871.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108944426 108971943 + MGP_C57BL6NJ_P0056871 Elf5 protein_coding protein_coding MGP_C57BL6NJ_T0056872.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108969790 108971927 + Elf5 protein_coding processed_transcript MGP_C57BL6NJ_T0056873.1 MGP_C57BL6NJ_G0026624.1 mouse_genomes_project 2 108971649 108972708 + Elf5 protein_coding processed_transcript MGP_C57BL6NJ_T0053169.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16100550 16290750 + MGP_C57BL6NJ_P0053169 Mllt10 protein_coding protein_coding MGP_C57BL6NJ_T0053170.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16109870 16187310 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053171.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110112 16290751 + MGP_C57BL6NJ_P0053171 Mllt10 protein_coding protein_coding MGP_C57BL6NJ_T0053172.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110160 16191065 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053173.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110163 16289334 + MGP_C57BL6NJ_P0053173 Mllt10 protein_coding protein_coding MGP_C57BL6NJ_T0053174.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110281 16188774 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053175.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110310 16167172 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053176.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16110317 16110732 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053177.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16146194 16290758 + MGP_C57BL6NJ_P0053177 Mllt10 protein_coding protein_coding MGP_C57BL6NJ_T0053178.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16188670 16231597 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0053179.1 MGP_C57BL6NJ_G0025789.1 mouse_genomes_project 2 16242513 16263543 + Mllt10 protein_coding processed_transcript MGP_C57BL6NJ_T0057098.1 MGP_C57BL6NJ_G0026682.1 mouse_genomes_project 2 117529697 117530511 + MGP_C57BL6NJ_P0057098 Olfr1281 protein_coding protein_coding MGP_C57BL6NJ_T0052933.1 MGP_C57BL6NJ_G0025750.1 mouse_genomes_project 2 7414953 7421451 - 9230102O04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0052934.1 MGP_C57BL6NJ_G0025750.1 mouse_genomes_project 2 7414954 7415906 - MGP_C57BL6NJ_P0052934 9230102O04Rik protein_coding protein_coding MGP_C57BL6NJ_T0010715.1 MGP_C57BL6NJ_G0008800.1 mouse_genomes_project 2 179084994 179085089 - Gm24561 miRNA miRNA MGP_C57BL6NJ_T0057126.1 MGP_C57BL6NJ_G0026706.1 mouse_genomes_project 2 118493716 118505048 - MGP_C57BL6NJ_P0057126 Nutm1 protein_coding protein_coding MGP_C57BL6NJ_T0060128.1 MGP_C57BL6NJ_G0027410.1 mouse_genomes_project 2 192071846 192075117 - Lama5 protein_coding processed_transcript MGP_C57BL6NJ_T0060129.1 MGP_C57BL6NJ_G0027410.1 mouse_genomes_project 2 192071846 192126641 - MGP_C57BL6NJ_P0060129 Lama5 protein_coding protein_coding MGP_C57BL6NJ_T0060130.1 MGP_C57BL6NJ_G0027410.1 mouse_genomes_project 2 192071927 192073061 - Lama5 protein_coding processed_transcript MGP_C57BL6NJ_T0060131.1 MGP_C57BL6NJ_G0027410.1 mouse_genomes_project 2 192072641 192073877 - Lama5 protein_coding processed_transcript MGP_C57BL6NJ_T0013990.1 MGP_C57BL6NJ_G0012035.1 mouse_genomes_project 2 96243996 96244234 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014080.1 MGP_C57BL6NJ_G0012125.1 mouse_genomes_project 2 134991640 135001142 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056244.1 MGP_C57BL6NJ_G0026419.1 mouse_genomes_project 2 91193842 91194586 + MGP_C57BL6NJ_P0056244 Olfr1113 protein_coding protein_coding MGP_C57BL6NJ_T0014140.1 MGP_C57BL6NJ_G0012185.1 mouse_genomes_project 2 158249452 158250171 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010609.1 MGP_C57BL6NJ_G0008694.1 mouse_genomes_project 2 20977020 20977115 + Gm23636 miRNA miRNA MGP_C57BL6NJ_T0057266.1 MGP_C57BL6NJ_G0026743.1 mouse_genomes_project 2 125479723 125485118 + MGP_C57BL6NJ_P0057266 Phgr1 protein_coding protein_coding MGP_C57BL6NJ_T0057267.1 MGP_C57BL6NJ_G0026743.1 mouse_genomes_project 2 125479723 125485117 + MGP_C57BL6NJ_P0057267 Phgr1 protein_coding protein_coding MGP_C57BL6NJ_T0059021.1 MGP_C57BL6NJ_G0027162.1 mouse_genomes_project 2 165148096 165171179 + MGP_C57BL6NJ_P0059021 Myh7b protein_coding protein_coding MGP_C57BL6NJ_T0059022.1 MGP_C57BL6NJ_G0027162.1 mouse_genomes_project 2 165165931 165167256 + Myh7b protein_coding processed_transcript MGP_C57BL6NJ_T0059023.1 MGP_C57BL6NJ_G0027162.1 mouse_genomes_project 2 165170322 165171075 + Myh7b protein_coding retained_intron MGP_C57BL6NJ_T0010721.1 MGP_C57BL6NJ_G0008806.1 mouse_genomes_project 2 185787415 185787483 + Gm27591 miRNA miRNA MGP_C57BL6NJ_T0057210.1 MGP_C57BL6NJ_G0026728.1 mouse_genomes_project 2 123418260 123431703 + MGP_C57BL6NJ_P0057210 Tmco5 protein_coding protein_coding MGP_C57BL6NJ_T0057211.1 MGP_C57BL6NJ_G0026728.1 mouse_genomes_project 2 123418263 123431659 + MGP_C57BL6NJ_P0057211 Tmco5 protein_coding protein_coding MGP_C57BL6NJ_T0057212.1 MGP_C57BL6NJ_G0026728.1 mouse_genomes_project 2 123418277 123432016 + MGP_C57BL6NJ_P0057212 Tmco5 protein_coding protein_coding MGP_C57BL6NJ_T0057213.1 MGP_C57BL6NJ_G0026728.1 mouse_genomes_project 2 123427728 123432016 + Tmco5 protein_coding processed_transcript MGP_C57BL6NJ_T0053968.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26564429 26631848 + MGP_C57BL6NJ_P0053968 Rxra protein_coding protein_coding MGP_C57BL6NJ_T0053969.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26599288 26650133 + MGP_C57BL6NJ_P0053969 Rxra protein_coding protein_coding MGP_C57BL6NJ_T0053970.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26600579 26650133 + MGP_C57BL6NJ_P0053970 Rxra protein_coding protein_coding MGP_C57BL6NJ_T0053971.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26627248 26652907 + MGP_C57BL6NJ_P0053971 Rxra protein_coding protein_coding MGP_C57BL6NJ_T0053972.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26627248 26651367 + MGP_C57BL6NJ_P0053972 Rxra protein_coding protein_coding MGP_C57BL6NJ_T0053973.1 MGP_C57BL6NJ_G0025933.1 mouse_genomes_project 2 26630150 26638621 + Rxra protein_coding processed_transcript MGP_C57BL6NJ_T0058882.1 MGP_C57BL6NJ_G0027129.1 mouse_genomes_project 2 163309474 163334957 + MGP_C57BL6NJ_P0058882 Bpifa6 protein_coding protein_coding MGP_C57BL6NJ_T0001161.1 MGP_C57BL6NJ_G0001067.1 mouse_genomes_project 2 9003336 9005547 - TEC TEC MGP_C57BL6NJ_T0058581.1 MGP_C57BL6NJ_G0027027.1 mouse_genomes_project 2 157182842 157184266 + MGP_C57BL6NJ_P0058581 Sstr4 protein_coding protein_coding MGP_C57BL6NJ_T0055043.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38872121 38926990 - MGP_C57BL6NJ_P0055043 Golga1 protein_coding protein_coding MGP_C57BL6NJ_T0055044.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38872227 38926937 - MGP_C57BL6NJ_P0055044 Golga1 protein_coding protein_coding MGP_C57BL6NJ_T0055045.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38872469 38914457 - MGP_C57BL6NJ_P0055045 Golga1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055046.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38872745 38874373 - Golga1 protein_coding processed_transcript MGP_C57BL6NJ_T0055047.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38873619 38874533 - Golga1 protein_coding retained_intron MGP_C57BL6NJ_T0055048.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38873619 38926937 - MGP_C57BL6NJ_P0055048 Golga1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055049.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38873779 38875528 - MGP_C57BL6NJ_P0055049 Golga1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055050.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38874120 38875208 - Golga1 protein_coding retained_intron MGP_C57BL6NJ_T0055051.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38879985 38926937 - Golga1 protein_coding retained_intron MGP_C57BL6NJ_T0055052.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38901610 38917566 - MGP_C57BL6NJ_P0055052 Golga1 protein_coding protein_coding MGP_C57BL6NJ_T0055053.1 MGP_C57BL6NJ_G0026128.1 mouse_genomes_project 2 38908451 38926934 - Golga1 protein_coding retained_intron MGP_C57BL6NJ_T0054957.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37101743 37155344 - MGP_C57BL6NJ_P0054957 Rc3h2 protein_coding protein_coding MGP_C57BL6NJ_T0054958.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37104814 37155433 - MGP_C57BL6NJ_P0054958 Rc3h2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054959.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37108536 37109248 - Rc3h2 protein_coding retained_intron MGP_C57BL6NJ_T0054960.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37109480 37112935 - Rc3h2 protein_coding retained_intron MGP_C57BL6NJ_T0054961.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37119552 37121788 - Rc3h2 protein_coding retained_intron MGP_C57BL6NJ_T0054962.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37129477 37132195 - Rc3h2 protein_coding retained_intron MGP_C57BL6NJ_T0054963.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37142084 37147252 - Rc3h2 protein_coding processed_transcript MGP_C57BL6NJ_T0054964.1 MGP_C57BL6NJ_G0026111.1 mouse_genomes_project 2 37146048 37149527 - Rc3h2 protein_coding retained_intron MGP_C57BL6NJ_T0054344.1 MGP_C57BL6NJ_G0025994.1 mouse_genomes_project 2 30069883 30115931 + MGP_C57BL6NJ_P0054344 Prrx2 protein_coding protein_coding MGP_C57BL6NJ_T0054345.1 MGP_C57BL6NJ_G0025994.1 mouse_genomes_project 2 30079970 30115960 + MGP_C57BL6NJ_P0054345 Prrx2 protein_coding protein_coding MGP_C57BL6NJ_T0054346.1 MGP_C57BL6NJ_G0025994.1 mouse_genomes_project 2 30080355 30113366 + Prrx2 protein_coding retained_intron MGP_C57BL6NJ_T0054347.1 MGP_C57BL6NJ_G0025994.1 mouse_genomes_project 2 30114027 30115829 + Prrx2 protein_coding retained_intron MGP_C57BL6NJ_T0059011.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165096400 165129641 - MGP_C57BL6NJ_P0059011 Gss protein_coding protein_coding MGP_C57BL6NJ_T0059012.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165096712 165106201 - MGP_C57BL6NJ_P0059012 Gss protein_coding protein_coding MGP_C57BL6NJ_T0059013.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165097434 165107580 - Gss protein_coding retained_intron MGP_C57BL6NJ_T0059016.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165106161 165116809 - MGP_C57BL6NJ_P0059016 Gss protein_coding protein_coding MGP_C57BL6NJ_T0059017.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165109982 165129613 - Gss protein_coding processed_transcript MGP_C57BL6NJ_T0059018.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165110718 165123181 - Gss protein_coding retained_intron MGP_C57BL6NJ_T0059019.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165110789 165129453 - MGP_C57BL6NJ_P0059019 Gss protein_coding protein_coding MGP_C57BL6NJ_T0059020.1 MGP_C57BL6NJ_G0027161.1 mouse_genomes_project 2 165111501 165116801 - Gss protein_coding processed_transcript MGP_C57BL6NJ_T0053085.1 MGP_C57BL6NJ_G0025771.1 mouse_genomes_project 2 11308656 11351785 - MGP_C57BL6NJ_P0053085 Trdmt1 protein_coding protein_coding MGP_C57BL6NJ_T0053086.1 MGP_C57BL6NJ_G0025771.1 mouse_genomes_project 2 11315760 11351767 - Trdmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0053087.1 MGP_C57BL6NJ_G0025771.1 mouse_genomes_project 2 11321761 11351780 - MGP_C57BL6NJ_P0053087 Trdmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013821.1 MGP_C57BL6NJ_G0011866.1 mouse_genomes_project 2 37223365 37224135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013908.1 MGP_C57BL6NJ_G0011953.1 mouse_genomes_project 2 69678830 69678913 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055830.1 MGP_C57BL6NJ_G0026266.1 mouse_genomes_project 2 77227885 77235345 + Hoxd11 protein_coding processed_transcript MGP_C57BL6NJ_T0055831.1 MGP_C57BL6NJ_G0026266.1 mouse_genomes_project 2 77230651 77232497 + MGP_C57BL6NJ_P0055831 Hoxd11 protein_coding protein_coding MGP_C57BL6NJ_T0004250.1 MGP_C57BL6NJ_G0003755.1 mouse_genomes_project 2 140624643 140625901 - Gm14104 antisense antisense MGP_C57BL6NJ_T0057365.1 MGP_C57BL6NJ_G0026770.1 mouse_genomes_project 2 126482677 126552732 + MGP_C57BL6NJ_P0057365 Rtf1 protein_coding protein_coding MGP_C57BL6NJ_T0057366.1 MGP_C57BL6NJ_G0026770.1 mouse_genomes_project 2 126482681 126501329 + Rtf1 protein_coding processed_transcript MGP_C57BL6NJ_T0057367.1 MGP_C57BL6NJ_G0026770.1 mouse_genomes_project 2 126526886 126528314 + Rtf1 protein_coding retained_intron MGP_C57BL6NJ_T0057368.1 MGP_C57BL6NJ_G0026770.1 mouse_genomes_project 2 126544008 126544977 + Rtf1 protein_coding retained_intron MGP_C57BL6NJ_T0103060.1 MGP_C57BL6NJ_G0040854.1 mouse_genomes_project 2 163382830 163387201 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0054991.1 MGP_C57BL6NJ_G0026117.1 mouse_genomes_project 2 37529734 37554053 + MGP_C57BL6NJ_P0054991 Crb2 protein_coding protein_coding MGP_C57BL6NJ_T0054992.1 MGP_C57BL6NJ_G0026117.1 mouse_genomes_project 2 37544642 37546995 + MGP_C57BL6NJ_P0054992 Crb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054993.1 MGP_C57BL6NJ_G0026117.1 mouse_genomes_project 2 37550117 37551566 + Crb2 protein_coding processed_transcript MGP_C57BL6NJ_T0004205.1 MGP_C57BL6NJ_G0003724.1 mouse_genomes_project 2 119754831 119756455 - Gm13966 antisense antisense MGP_C57BL6NJ_T0057029.1 MGP_C57BL6NJ_G0026656.1 mouse_genomes_project 2 112758532 112778921 - MGP_C57BL6NJ_P0057029 Arl14ep protein_coding protein_coding MGP_C57BL6NJ_T0057030.1 MGP_C57BL6NJ_G0026656.1 mouse_genomes_project 2 112760422 112766385 - MGP_C57BL6NJ_P0057030 Arl14ep protein_coding protein_coding MGP_C57BL6NJ_T0057031.1 MGP_C57BL6NJ_G0026656.1 mouse_genomes_project 2 112761184 112765271 - Arl14ep protein_coding retained_intron MGP_C57BL6NJ_T0057032.1 MGP_C57BL6NJ_G0026656.1 mouse_genomes_project 2 112763401 112778894 - Arl14ep protein_coding retained_intron MGP_C57BL6NJ_T0056753.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98617081 98630964 - MGP_C57BL6NJ_P0056753 Accsl protein_coding protein_coding MGP_C57BL6NJ_T0056754.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98617082 98618780 - MGP_C57BL6NJ_P0056754 Accsl protein_coding protein_coding MGP_C57BL6NJ_T0056755.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98617087 98618453 - Accsl protein_coding processed_transcript MGP_C57BL6NJ_T0056756.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98622823 98626576 - Accsl protein_coding processed_transcript MGP_C57BL6NJ_T0056757.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98623537 98630964 - Accsl protein_coding processed_transcript MGP_C57BL6NJ_T0056758.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98627634 98630879 - MGP_C57BL6NJ_P0056758 Accsl protein_coding protein_coding MGP_C57BL6NJ_T0056759.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98627634 98630889 - MGP_C57BL6NJ_P0056759 Accsl protein_coding protein_coding MGP_C57BL6NJ_T0056760.1 MGP_C57BL6NJ_G0026601.1 mouse_genomes_project 2 98627786 98630500 - Accsl protein_coding processed_transcript MGP_C57BL6NJ_T0013779.1 MGP_C57BL6NJ_G0011824.1 mouse_genomes_project 2 21026624 21026985 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004169.1 MGP_C57BL6NJ_G0003702.1 mouse_genomes_project 2 77246708 77247527 - Gm28793 antisense antisense MGP_C57BL6NJ_T0055857.1 MGP_C57BL6NJ_G0026276.1 mouse_genomes_project 2 78301316 78338538 - MGP_C57BL6NJ_P0055857 Nfe2l2 protein_coding protein_coding MGP_C57BL6NJ_T0055858.1 MGP_C57BL6NJ_G0026276.1 mouse_genomes_project 2 78320515 78338386 - Nfe2l2 protein_coding processed_transcript MGP_C57BL6NJ_T0056226.1 MGP_C57BL6NJ_G0026402.1 mouse_genomes_project 2 90701495 90702488 + MGP_C57BL6NJ_P0056226 Olfr1094 protein_coding protein_coding MGP_C57BL6NJ_T0007600.1 MGP_C57BL6NJ_G0006233.1 mouse_genomes_project 2 186436980 186447223 + Gm14616 lincRNA lincRNA MGP_C57BL6NJ_T0054418.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863385 30909200 + MGP_C57BL6NJ_P0054418 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054419.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863525 30885985 + MGP_C57BL6NJ_P0054419 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054420.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863526 30875636 + Fubp3 protein_coding retained_intron MGP_C57BL6NJ_T0054421.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863548 30889276 + MGP_C57BL6NJ_P0054421 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054422.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863551 30909193 + MGP_C57BL6NJ_P0054422 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054423.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30863561 30889262 + MGP_C57BL6NJ_P0054423 Fubp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054424.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30893984 30904782 + MGP_C57BL6NJ_P0054424 Fubp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054425.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30895419 30907607 + MGP_C57BL6NJ_P0054425 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054426.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30904205 30908390 + MGP_C57BL6NJ_P0054426 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054427.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30906435 30909192 + MGP_C57BL6NJ_P0054427 Fubp3 protein_coding protein_coding MGP_C57BL6NJ_T0054428.1 MGP_C57BL6NJ_G0026005.1 mouse_genomes_project 2 30906853 30909194 + Fubp3 protein_coding retained_intron MGP_C57BL6NJ_T0101490.1 MGP_C57BL6NJ_G0039536.1 mouse_genomes_project 2 55589627 55589766 - Gm24549 snoRNA snoRNA MGP_C57BL6NJ_T0013877.1 MGP_C57BL6NJ_G0011922.1 mouse_genomes_project 2 58923592 58923769 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004186.1 MGP_C57BL6NJ_G0003714.1 mouse_genomes_project 2 107437015 107465334 + Gm13919 antisense antisense MGP_C57BL6NJ_T0004187.1 MGP_C57BL6NJ_G0003714.1 mouse_genomes_project 2 107437023 107439640 + Gm13919 antisense antisense MGP_C57BL6NJ_T0013860.1 MGP_C57BL6NJ_G0011905.1 mouse_genomes_project 2 52379984 52380219 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053454.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23665352 23667164 + Entpd8 protein_coding retained_intron MGP_C57BL6NJ_T0053455.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23665370 23670765 + MGP_C57BL6NJ_P0053455 Entpd8 protein_coding protein_coding MGP_C57BL6NJ_T0053456.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23665373 23670765 + MGP_C57BL6NJ_P0053456 Entpd8 protein_coding protein_coding MGP_C57BL6NJ_T0053457.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23665557 23670764 + Entpd8 protein_coding retained_intron MGP_C57BL6NJ_T0053458.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23666859 23670201 + Entpd8 protein_coding retained_intron MGP_C57BL6NJ_T0053459.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23666866 23670765 + MGP_C57BL6NJ_P0053459 Entpd8 protein_coding protein_coding MGP_C57BL6NJ_T0053460.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23667081 23668783 + MGP_C57BL6NJ_P0053460 Entpd8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053461.1 MGP_C57BL6NJ_G0025836.1 mouse_genomes_project 2 23669725 23670623 + Entpd8 protein_coding retained_intron MGP_C57BL6NJ_T0103003.1 MGP_C57BL6NJ_G0040797.1 mouse_genomes_project 2 36824852 36825106 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018256.1 MGP_C57BL6NJ_G0015825.1 mouse_genomes_project 2 80645125 80646840 - Gm13727 processed_transcript processed_transcript MGP_C57BL6NJ_T0053691.1 MGP_C57BL6NJ_G0025885.1 mouse_genomes_project 2 24411671 24414760 + MGP_C57BL6NJ_P0053691 Obp2b protein_coding protein_coding MGP_C57BL6NJ_T0058400.1 MGP_C57BL6NJ_G0026985.1 mouse_genomes_project 2 147692203 147845874 + MGP_C57BL6NJ_P0058400 Sptlc3 protein_coding protein_coding MGP_C57BL6NJ_T0058401.1 MGP_C57BL6NJ_G0026985.1 mouse_genomes_project 2 147692210 147846492 + MGP_C57BL6NJ_P0058401 Sptlc3 protein_coding protein_coding MGP_C57BL6NJ_T0010650.1 MGP_C57BL6NJ_G0008735.1 mouse_genomes_project 2 69693896 69693994 + Mir6335 miRNA miRNA MGP_C57BL6NJ_T0014098.1 MGP_C57BL6NJ_G0012143.1 mouse_genomes_project 2 140418012 140418617 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004329.1 MGP_C57BL6NJ_G0003819.1 mouse_genomes_project 2 184529879 184534652 + Ctcflos antisense antisense MGP_C57BL6NJ_T0004330.1 MGP_C57BL6NJ_G0003819.1 mouse_genomes_project 2 184529896 184553915 + Ctcflos antisense antisense MGP_C57BL6NJ_T0004331.1 MGP_C57BL6NJ_G0003819.1 mouse_genomes_project 2 184541410 184550955 + Ctcflos antisense antisense MGP_C57BL6NJ_T0004332.1 MGP_C57BL6NJ_G0003819.1 mouse_genomes_project 2 184546393 184554849 + Ctcflos antisense antisense MGP_C57BL6NJ_T0055504.1 MGP_C57BL6NJ_G0026201.1 mouse_genomes_project 2 67968613 68049189 - MGP_C57BL6NJ_P0055504 Ttc21b protein_coding protein_coding MGP_C57BL6NJ_T0055505.1 MGP_C57BL6NJ_G0026201.1 mouse_genomes_project 2 68006855 68026331 - Ttc21b protein_coding retained_intron MGP_C57BL6NJ_T0055506.1 MGP_C57BL6NJ_G0026201.1 mouse_genomes_project 2 68022312 68042065 - Ttc21b protein_coding retained_intron MGP_C57BL6NJ_T0100231.1 MGP_C57BL6NJ_G0038277.1 mouse_genomes_project 2 175010816 175010923 + Gm25512 snRNA snRNA MGP_C57BL6NJ_T0059073.1 MGP_C57BL6NJ_G0027172.1 mouse_genomes_project 2 165507686 165509709 + MGP_C57BL6NJ_P0059073 Gm15557 protein_coding protein_coding MGP_C57BL6NJ_T0058669.1 MGP_C57BL6NJ_G0027061.1 mouse_genomes_project 2 160030740 160039656 - MGP_C57BL6NJ_P0058669 protein_coding protein_coding MGP_C57BL6NJ_T0058951.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164227239 164519671 + MGP_C57BL6NJ_P0058951 a protein_coding protein_coding MGP_C57BL6NJ_T0058958.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164416314 164517615 + a protein_coding processed_transcript MGP_C57BL6NJ_T0058959.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164416353 164522955 + MGP_C57BL6NJ_P0058959 a protein_coding protein_coding MGP_C57BL6NJ_T0058960.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164492464 164522576 + MGP_C57BL6NJ_P0058960 a protein_coding protein_coding MGP_C57BL6NJ_T0058961.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164492523 164522956 + MGP_C57BL6NJ_P0058961 a protein_coding protein_coding MGP_C57BL6NJ_T0058962.1 MGP_C57BL6NJ_G0027150.1 mouse_genomes_project 2 164519558 164522955 + a protein_coding retained_intron MGP_C57BL6NJ_T0055459.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66778172 66948843 - MGP_C57BL6NJ_P0055459 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055460.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66778183 66948790 - MGP_C57BL6NJ_P0055460 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055461.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66778183 66948938 - MGP_C57BL6NJ_P0055461 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055462.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66778183 66948843 - MGP_C57BL6NJ_P0055462 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055463.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66778183 66948843 - MGP_C57BL6NJ_P0055463 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055464.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66790491 66798829 - Cobll1 protein_coding processed_transcript MGP_C57BL6NJ_T0055465.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66820681 66949261 - MGP_C57BL6NJ_P0055465 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055466.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66828489 66949313 - MGP_C57BL6NJ_P0055466 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055467.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66831059 66946213 - Cobll1 protein_coding processed_transcript MGP_C57BL6NJ_T0055468.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66831092 66948790 - MGP_C57BL6NJ_P0055468 Cobll1 protein_coding protein_coding MGP_C57BL6NJ_T0055469.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66843443 66949264 - Cobll1 protein_coding processed_transcript MGP_C57BL6NJ_T0055470.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66846000 66949620 - Cobll1 protein_coding processed_transcript MGP_C57BL6NJ_T0055471.1 MGP_C57BL6NJ_G0026195.1 mouse_genomes_project 2 66846164 66948691 - Cobll1 protein_coding processed_transcript MGP_C57BL6NJ_T0013772.1 MGP_C57BL6NJ_G0011817.1 mouse_genomes_project 2 17721183 17721411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007470.1 MGP_C57BL6NJ_G0006125.1 mouse_genomes_project 2 122543964 122545189 - 2700033N17Rik lincRNA lincRNA MGP_C57BL6NJ_T0014166.1 MGP_C57BL6NJ_G0012211.1 mouse_genomes_project 2 165926230 165926509 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098859.1 MGP_C57BL6NJ_G0036923.1 mouse_genomes_project 2 90678403 90679380 - pseudogene pseudogene MGP_C57BL6NJ_T0057156.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 119626520 120041977 + MGP_C57BL6NJ_P0057156 Fmn1 protein_coding protein_coding MGP_C57BL6NJ_T0057157.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 119626555 119809515 + Fmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0057158.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 119626566 120035065 + MGP_C57BL6NJ_P0057158 Fmn1 protein_coding protein_coding MGP_C57BL6NJ_T0057159.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 119675974 120034816 + MGP_C57BL6NJ_P0057159 Fmn1 protein_coding protein_coding MGP_C57BL6NJ_T0057160.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 119755214 120035065 + MGP_C57BL6NJ_P0057160 Fmn1 protein_coding protein_coding MGP_C57BL6NJ_T0057161.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 120007561 120016958 + Fmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0057162.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 120007576 120035062 + Fmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0057163.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 120007576 120034944 + Fmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0057164.1 MGP_C57BL6NJ_G0026717.1 mouse_genomes_project 2 120033880 120034940 + Fmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0100182.1 MGP_C57BL6NJ_G0038228.1 mouse_genomes_project 2 27555382 27555486 + Gm22675 snRNA snRNA MGP_C57BL6NJ_T0007418.1 MGP_C57BL6NJ_G0006084.1 mouse_genomes_project 2 80823458 80842739 + lincRNA lincRNA MGP_C57BL6NJ_T0007419.1 MGP_C57BL6NJ_G0006084.1 mouse_genomes_project 2 80823504 80974375 + lincRNA lincRNA MGP_C57BL6NJ_T0057994.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136079372 136160574 - MGP_C57BL6NJ_P0057994 Anapc1 protein_coding protein_coding MGP_C57BL6NJ_T0057995.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136084671 136087411 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0057996.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136086841 136092114 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0057997.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136091643 136096730 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0057998.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136093008 136097908 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0057999.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136097811 136099304 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0058000.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136112865 136160559 - MGP_C57BL6NJ_P0058000 Anapc1 protein_coding protein_coding MGP_C57BL6NJ_T0058001.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136128708 136134165 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0058002.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136130587 136135008 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0058003.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136147960 136160558 - Anapc1 protein_coding processed_transcript MGP_C57BL6NJ_T0058004.1 MGP_C57BL6NJ_G0026895.1 mouse_genomes_project 2 136158231 136160537 - MGP_C57BL6NJ_P0058004 Anapc1 protein_coding protein_coding MGP_C57BL6NJ_T0099371.1 MGP_C57BL6NJ_G0037429.1 mouse_genomes_project 2 19249101 19259961 - Gm13380 sense_intronic sense_intronic MGP_C57BL6NJ_T0018257.1 MGP_C57BL6NJ_G0015826.1 mouse_genomes_project 2 86967765 86990235 - Gm13684 processed_transcript processed_transcript MGP_C57BL6NJ_T0056574.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96121534 96222417 + MGP_C57BL6NJ_P0056574 Ckap5 protein_coding protein_coding MGP_C57BL6NJ_T0056575.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96121750 96149276 + Ckap5 protein_coding processed_transcript MGP_C57BL6NJ_T0056576.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96140206 96159164 + Ckap5 protein_coding retained_intron MGP_C57BL6NJ_T0056577.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96140208 96222415 + MGP_C57BL6NJ_P0056577 Ckap5 protein_coding protein_coding MGP_C57BL6NJ_T0056578.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96140208 96222415 + MGP_C57BL6NJ_P0056578 Ckap5 protein_coding protein_coding MGP_C57BL6NJ_T0056579.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96140219 96222416 + MGP_C57BL6NJ_P0056579 Ckap5 protein_coding protein_coding MGP_C57BL6NJ_T0056580.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96149151 96159167 + Ckap5 protein_coding retained_intron MGP_C57BL6NJ_T0056581.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96191472 96206404 + Ckap5 protein_coding processed_transcript MGP_C57BL6NJ_T0056582.1 MGP_C57BL6NJ_G0026572.1 mouse_genomes_project 2 96192795 96197401 + Ckap5 protein_coding retained_intron MGP_C57BL6NJ_T0057023.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112464188 112654052 + MGP_C57BL6NJ_P0057023 Mpped2 protein_coding protein_coding MGP_C57BL6NJ_T0057024.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112466139 112521875 + MGP_C57BL6NJ_P0057024 Mpped2 protein_coding protein_coding MGP_C57BL6NJ_T0057025.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112466520 112652898 + MGP_C57BL6NJ_P0057025 Mpped2 protein_coding protein_coding MGP_C57BL6NJ_T0057026.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112466542 112561779 + Mpped2 protein_coding processed_transcript MGP_C57BL6NJ_T0057027.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112466773 112652727 + MGP_C57BL6NJ_P0057027 Mpped2 protein_coding protein_coding MGP_C57BL6NJ_T0057028.1 MGP_C57BL6NJ_G0026655.1 mouse_genomes_project 2 112505903 112561898 + Mpped2 protein_coding processed_transcript MGP_C57BL6NJ_T0103009.1 MGP_C57BL6NJ_G0040803.1 mouse_genomes_project 2 89052401 89053323 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058986.1 MGP_C57BL6NJ_G0027157.1 mouse_genomes_project 2 164890196 164896783 + MGP_C57BL6NJ_P0058986 Trp53inp2 protein_coding protein_coding MGP_C57BL6NJ_T0058987.1 MGP_C57BL6NJ_G0027157.1 mouse_genomes_project 2 164890951 164900576 + MGP_C57BL6NJ_P0058987 Trp53inp2 protein_coding protein_coding MGP_C57BL6NJ_T0058988.1 MGP_C57BL6NJ_G0027157.1 mouse_genomes_project 2 164890977 164897483 + MGP_C57BL6NJ_P0058988 Trp53inp2 protein_coding protein_coding MGP_C57BL6NJ_T0058989.1 MGP_C57BL6NJ_G0027157.1 mouse_genomes_project 2 164890997 164896682 + Trp53inp2 protein_coding retained_intron MGP_C57BL6NJ_T0058990.1 MGP_C57BL6NJ_G0027157.1 mouse_genomes_project 2 164891339 164896694 + MGP_C57BL6NJ_P0058990 Trp53inp2 protein_coding protein_coding MGP_C57BL6NJ_T0053203.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16807125 16820536 + MGP_C57BL6NJ_P0053203 Bmi1 protein_coding protein_coding MGP_C57BL6NJ_T0053204.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16807426 16815439 + Bmi1 protein_coding processed_transcript MGP_C57BL6NJ_T0053205.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16810772 16816750 + MGP_C57BL6NJ_P0053205 Bmi1 protein_coding protein_coding MGP_C57BL6NJ_T0053206.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16813339 16817087 + MGP_C57BL6NJ_P0053206 Bmi1 protein_coding protein_coding MGP_C57BL6NJ_T0053207.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16813947 16816104 + MGP_C57BL6NJ_P0053207 Bmi1 protein_coding protein_coding MGP_C57BL6NJ_T0053208.1 MGP_C57BL6NJ_G0025792.1 mouse_genomes_project 2 16814058 16815930 + MGP_C57BL6NJ_P0053208 Bmi1 protein_coding protein_coding MGP_C57BL6NJ_T0055483.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67369519 67522890 + MGP_C57BL6NJ_P0055483 Scn2a1 protein_coding protein_coding MGP_C57BL6NJ_T0055484.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67369519 67436488 + MGP_C57BL6NJ_P0055484 Scn2a1 protein_coding protein_coding MGP_C57BL6NJ_T0055485.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67369559 67372013 + Scn2a1 protein_coding retained_intron MGP_C57BL6NJ_T0055486.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67415014 67418110 + Scn2a1 protein_coding retained_intron MGP_C57BL6NJ_T0055487.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67415093 67520511 + MGP_C57BL6NJ_P0055487 Scn2a1 protein_coding protein_coding MGP_C57BL6NJ_T0055488.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67416757 67522890 + MGP_C57BL6NJ_P0055488 Scn2a1 protein_coding protein_coding MGP_C57BL6NJ_T0055489.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67428592 67430179 + Scn2a1 protein_coding retained_intron MGP_C57BL6NJ_T0055490.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67473774 67484663 + MGP_C57BL6NJ_P0055490 Scn2a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055491.1 MGP_C57BL6NJ_G0026198.1 mouse_genomes_project 2 67473797 67484614 + MGP_C57BL6NJ_P0055491 Scn2a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010651.1 MGP_C57BL6NJ_G0008736.1 mouse_genomes_project 2 75370558 75370683 - Gm25960 miRNA miRNA MGP_C57BL6NJ_T0055259.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58485939 58624224 + Gpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0055260.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58485982 58627090 + MGP_C57BL6NJ_P0055260 Gpd2 protein_coding protein_coding MGP_C57BL6NJ_T0055261.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58486601 58627090 + MGP_C57BL6NJ_P0055261 Gpd2 protein_coding protein_coding MGP_C57BL6NJ_T0055262.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58486686 58627090 + MGP_C57BL6NJ_P0055262 Gpd2 protein_coding protein_coding MGP_C57BL6NJ_T0055263.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58493051 58560413 + Gpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0055264.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58513818 58516792 + Gpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0055265.1 MGP_C57BL6NJ_G0026161.1 mouse_genomes_project 2 58516060 58516792 + Gpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0059553.1 MGP_C57BL6NJ_G0027271.1 mouse_genomes_project 2 174702596 174705034 - MGP_C57BL6NJ_P0059553 Slpi protein_coding protein_coding MGP_C57BL6NJ_T0059554.1 MGP_C57BL6NJ_G0027271.1 mouse_genomes_project 2 174702688 174704594 - MGP_C57BL6NJ_P0059554 Slpi protein_coding protein_coding MGP_C57BL6NJ_T0059555.1 MGP_C57BL6NJ_G0027271.1 mouse_genomes_project 2 174704121 174741818 - MGP_C57BL6NJ_P0059555 Slpi protein_coding protein_coding MGP_C57BL6NJ_T0058622.1 MGP_C57BL6NJ_G0027047.1 mouse_genomes_project 2 159030926 159061267 - MGP_C57BL6NJ_P0058622 Zfp120 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058623.1 MGP_C57BL6NJ_G0027047.1 mouse_genomes_project 2 159030926 159061297 - MGP_C57BL6NJ_P0058623 Zfp120 protein_coding protein_coding MGP_C57BL6NJ_T0058624.1 MGP_C57BL6NJ_G0027047.1 mouse_genomes_project 2 159030926 159061267 - MGP_C57BL6NJ_P0058624 Zfp120 protein_coding protein_coding MGP_C57BL6NJ_T0058625.1 MGP_C57BL6NJ_G0027047.1 mouse_genomes_project 2 159038589 159061245 - Zfp120 protein_coding processed_transcript MGP_C57BL6NJ_T0001224.1 MGP_C57BL6NJ_G0001130.1 mouse_genomes_project 2 124686908 124688546 + TEC TEC MGP_C57BL6NJ_T0056775.1 MGP_C57BL6NJ_G0026605.1 mouse_genomes_project 2 98806348 98841364 - Hsd17b12 protein_coding processed_transcript MGP_C57BL6NJ_T0056776.1 MGP_C57BL6NJ_G0026605.1 mouse_genomes_project 2 98806348 98934610 - MGP_C57BL6NJ_P0056776 Hsd17b12 protein_coding protein_coding MGP_C57BL6NJ_T0056777.1 MGP_C57BL6NJ_G0026605.1 mouse_genomes_project 2 98806361 98934555 - Hsd17b12 protein_coding processed_transcript MGP_C57BL6NJ_T0056778.1 MGP_C57BL6NJ_G0026605.1 mouse_genomes_project 2 98807181 98841659 - Hsd17b12 protein_coding processed_transcript MGP_C57BL6NJ_T0056779.1 MGP_C57BL6NJ_G0026605.1 mouse_genomes_project 2 98890286 98934539 - Hsd17b12 protein_coding processed_transcript MGP_C57BL6NJ_T0056964.1 MGP_C57BL6NJ_G0026644.1 mouse_genomes_project 2 110480500 110499291 - MGP_C57BL6NJ_P0056964 Prrg4 protein_coding protein_coding MGP_C57BL6NJ_T0056965.1 MGP_C57BL6NJ_G0026644.1 mouse_genomes_project 2 110489062 110498908 - MGP_C57BL6NJ_P0056965 Prrg4 protein_coding protein_coding MGP_C57BL6NJ_T0054914.1 MGP_C57BL6NJ_G0026080.1 mouse_genomes_project 2 35800116 35853920 + MGP_C57BL6NJ_P0054914 Mrrf protein_coding protein_coding MGP_C57BL6NJ_T0054915.1 MGP_C57BL6NJ_G0026080.1 mouse_genomes_project 2 35800125 35802545 + Mrrf protein_coding retained_intron MGP_C57BL6NJ_T0054916.1 MGP_C57BL6NJ_G0026080.1 mouse_genomes_project 2 35800361 35811693 + MGP_C57BL6NJ_P0054916 Mrrf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054917.1 MGP_C57BL6NJ_G0026080.1 mouse_genomes_project 2 35810876 35823433 + Mrrf protein_coding processed_transcript MGP_C57BL6NJ_T0010679.1 MGP_C57BL6NJ_G0008764.1 mouse_genomes_project 2 123758548 123758648 + Mir674 miRNA miRNA MGP_C57BL6NJ_T0055866.1 MGP_C57BL6NJ_G0026278.1 mouse_genomes_project 2 78585949 78587801 - MGP_C57BL6NJ_P0055866 protein_coding protein_coding MGP_C57BL6NJ_T0004061.1 MGP_C57BL6NJ_G0003622.1 mouse_genomes_project 2 18723190 18727215 - antisense antisense MGP_C57BL6NJ_T0057356.1 MGP_C57BL6NJ_G0026767.1 mouse_genomes_project 2 126407666 126421094 - Oip5 protein_coding retained_intron MGP_C57BL6NJ_T0057357.1 MGP_C57BL6NJ_G0026767.1 mouse_genomes_project 2 126408125 126421094 - MGP_C57BL6NJ_P0057357 Oip5 protein_coding protein_coding MGP_C57BL6NJ_T0004052.1 MGP_C57BL6NJ_G0003614.1 mouse_genomes_project 2 12536987 12564402 - Gm10848 antisense antisense MGP_C57BL6NJ_T0013737.1 MGP_C57BL6NJ_G0011782.1 mouse_genomes_project 2 4969290 4969558 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054364.1 MGP_C57BL6NJ_G0025998.1 mouse_genomes_project 2 30216283 30225789 - MGP_C57BL6NJ_P0054364 BC005624 protein_coding protein_coding MGP_C57BL6NJ_T0054365.1 MGP_C57BL6NJ_G0025998.1 mouse_genomes_project 2 30220007 30224354 - BC005624 protein_coding retained_intron MGP_C57BL6NJ_T0054366.1 MGP_C57BL6NJ_G0025998.1 mouse_genomes_project 2 30224750 30226049 - BC005624 protein_coding retained_intron MGP_C57BL6NJ_T0004160.1 MGP_C57BL6NJ_G0003695.1 mouse_genomes_project 2 75823410 75831629 + Gm13703 antisense antisense MGP_C57BL6NJ_T0007296.1 MGP_C57BL6NJ_G0005987.1 mouse_genomes_project 2 3382416 3391785 + Gm10857 lincRNA lincRNA MGP_C57BL6NJ_T0007297.1 MGP_C57BL6NJ_G0005987.1 mouse_genomes_project 2 3382430 3391730 + Gm10857 lincRNA lincRNA MGP_C57BL6NJ_T0053692.1 MGP_C57BL6NJ_G0025886.1 mouse_genomes_project 2 24447062 24449593 + MGP_C57BL6NJ_P0053692 Lcn3 protein_coding protein_coding MGP_C57BL6NJ_T0004226.1 MGP_C57BL6NJ_G0003741.1 mouse_genomes_project 2 135091755 135100330 + Gm14244 antisense antisense MGP_C57BL6NJ_T0013837.1 MGP_C57BL6NJ_G0011882.1 mouse_genomes_project 2 40230632 40231149 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018290.1 MGP_C57BL6NJ_G0015844.1 mouse_genomes_project 2 112406044 112406519 - BB218582 processed_transcript processed_transcript MGP_C57BL6NJ_T0018291.1 MGP_C57BL6NJ_G0015844.1 mouse_genomes_project 2 112406047 112413503 - BB218582 processed_transcript processed_transcript MGP_C57BL6NJ_T0018292.1 MGP_C57BL6NJ_G0015844.1 mouse_genomes_project 2 112410340 112413473 - BB218582 processed_transcript processed_transcript MGP_C57BL6NJ_T0013970.1 MGP_C57BL6NJ_G0012015.1 mouse_genomes_project 2 91218926 91219461 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004280.1 MGP_C57BL6NJ_G0003779.1 mouse_genomes_project 2 162167480 162169095 - Gm14199 antisense antisense MGP_C57BL6NJ_T0057912.1 MGP_C57BL6NJ_G0026873.1 mouse_genomes_project 2 134577008 134595456 + Snrnp200 protein_coding retained_intron MGP_C57BL6NJ_T0057913.1 MGP_C57BL6NJ_G0026873.1 mouse_genomes_project 2 134577021 134613341 + MGP_C57BL6NJ_P0057913 Snrnp200 protein_coding protein_coding MGP_C57BL6NJ_T0057914.1 MGP_C57BL6NJ_G0026873.1 mouse_genomes_project 2 134594433 134597896 + Snrnp200 protein_coding processed_transcript MGP_C57BL6NJ_T0057915.1 MGP_C57BL6NJ_G0026873.1 mouse_genomes_project 2 134609547 134611216 + Snrnp200 protein_coding retained_intron MGP_C57BL6NJ_T0057916.1 MGP_C57BL6NJ_G0026873.1 mouse_genomes_project 2 134610981 134612850 + Snrnp200 protein_coding retained_intron MGP_C57BL6NJ_T0101504.1 MGP_C57BL6NJ_G0039550.1 mouse_genomes_project 2 102067165 102067288 + Gm22957 snoRNA snoRNA MGP_C57BL6NJ_T0053109.1 MGP_C57BL6NJ_G0025777.1 mouse_genomes_project 2 12060781 12152451 + MGP_C57BL6NJ_P0053109 Mrc1 protein_coding protein_coding MGP_C57BL6NJ_T0053110.1 MGP_C57BL6NJ_G0025777.1 mouse_genomes_project 2 12148954 12152321 + Mrc1 protein_coding retained_intron MGP_C57BL6NJ_T0018205.1 MGP_C57BL6NJ_G0015792.1 mouse_genomes_project 2 22966346 23022174 + Gm13415 processed_transcript antisense MGP_C57BL6NJ_T0018206.1 MGP_C57BL6NJ_G0015792.1 mouse_genomes_project 2 22968763 22996492 + Gm13415 processed_transcript antisense MGP_C57BL6NJ_T0018207.1 MGP_C57BL6NJ_G0015792.1 mouse_genomes_project 2 22968777 22971193 + Gm13415 processed_transcript retained_intron MGP_C57BL6NJ_T0013982.1 MGP_C57BL6NJ_G0012027.1 mouse_genomes_project 2 91907995 91908522 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059657.1 MGP_C57BL6NJ_G0027304.1 mouse_genomes_project 2 175330739 175335573 + Pcif1 protein_coding retained_intron MGP_C57BL6NJ_T0059658.1 MGP_C57BL6NJ_G0027304.1 mouse_genomes_project 2 175330800 175346828 + MGP_C57BL6NJ_P0059658 Pcif1 protein_coding protein_coding MGP_C57BL6NJ_T0059659.1 MGP_C57BL6NJ_G0027304.1 mouse_genomes_project 2 175331487 175335484 + Pcif1 protein_coding retained_intron MGP_C57BL6NJ_T0059660.1 MGP_C57BL6NJ_G0027304.1 mouse_genomes_project 2 175336306 175337068 + Pcif1 protein_coding retained_intron MGP_C57BL6NJ_T0053753.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25051446 25080247 + MGP_C57BL6NJ_P0053753 Gpsm1 protein_coding protein_coding MGP_C57BL6NJ_T0053754.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25051507 25079023 + MGP_C57BL6NJ_P0053754 Gpsm1 protein_coding protein_coding MGP_C57BL6NJ_T0053755.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25055597 25080247 + MGP_C57BL6NJ_P0053755 Gpsm1 protein_coding protein_coding MGP_C57BL6NJ_T0053756.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25061157 25063511 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053757.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25061668 25072460 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053758.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25061858 25071930 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053759.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25066155 25080247 + MGP_C57BL6NJ_P0053759 Gpsm1 protein_coding protein_coding MGP_C57BL6NJ_T0053760.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25066198 25072541 + MGP_C57BL6NJ_P0053760 Gpsm1 protein_coding protein_coding MGP_C57BL6NJ_T0053761.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25071440 25077341 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053762.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25071457 25076734 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053763.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25074298 25079285 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0053764.1 MGP_C57BL6NJ_G0025899.1 mouse_genomes_project 2 25076247 25078920 + Gpsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0004313.1 MGP_C57BL6NJ_G0003804.1 mouse_genomes_project 2 175363736 175373639 + Zfp335os antisense antisense MGP_C57BL6NJ_T0004314.1 MGP_C57BL6NJ_G0003804.1 mouse_genomes_project 2 175366312 175373245 + Zfp335os antisense antisense MGP_C57BL6NJ_T0053935.1 MGP_C57BL6NJ_G0025928.1 mouse_genomes_project 2 25990075 26009731 + MGP_C57BL6NJ_P0053935 Dbh protein_coding protein_coding MGP_C57BL6NJ_T0053936.1 MGP_C57BL6NJ_G0025928.1 mouse_genomes_project 2 26003623 26003903 + Dbh protein_coding processed_transcript MGP_C57BL6NJ_T0055143.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49578659 49901061 + MGP_C57BL6NJ_P0055143 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0055144.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49578669 49750540 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055145.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49578674 49963480 + MGP_C57BL6NJ_P0055145 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0055146.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49579113 49651641 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055147.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49579114 49583241 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055148.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49579216 49750404 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055149.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49579294 49885597 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055150.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49579300 49696534 + Mbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0055151.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49886008 49966198 + MGP_C57BL6NJ_P0055151 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0055152.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49886209 49912582 + MGP_C57BL6NJ_P0055152 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0055153.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49897063 49963506 + MGP_C57BL6NJ_P0055153 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0055154.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49912686 49971913 + MGP_C57BL6NJ_P0055154 Mbd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055155.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49919972 49963160 + MGP_C57BL6NJ_P0055155 Mbd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055156.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49919973 49963171 + MGP_C57BL6NJ_P0055156 Mbd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055157.1 MGP_C57BL6NJ_G0026138.1 mouse_genomes_project 2 49920121 49963394 + MGP_C57BL6NJ_P0055157 Mbd5 protein_coding protein_coding MGP_C57BL6NJ_T0014044.1 MGP_C57BL6NJ_G0012089.1 mouse_genomes_project 2 115798302 115798912 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014151.1 MGP_C57BL6NJ_G0012196.1 mouse_genomes_project 2 161587104 161587412 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054094.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28826852 28861705 - MGP_C57BL6NJ_P0054094 Trub2 protein_coding protein_coding MGP_C57BL6NJ_T0054098.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28843405 28861717 - MGP_C57BL6NJ_P0054098 Trub2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054099.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28849649 28862559 - MGP_C57BL6NJ_P0054099 Trub2 protein_coding protein_coding MGP_C57BL6NJ_T0054100.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28850961 28861691 - MGP_C57BL6NJ_P0054100 Trub2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054101.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28851030 28861679 - MGP_C57BL6NJ_P0054101 Trub2 protein_coding protein_coding MGP_C57BL6NJ_T0054102.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28851867 28861728 - MGP_C57BL6NJ_P0054102 Trub2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054103.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28852026 28856404 - Trub2 protein_coding retained_intron MGP_C57BL6NJ_T0054104.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28852480 28856258 - Trub2 protein_coding retained_intron MGP_C57BL6NJ_T0054105.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28857280 28861687 - Trub2 protein_coding retained_intron MGP_C57BL6NJ_T0054106.1 MGP_C57BL6NJ_G0025959.1 mouse_genomes_project 2 28858981 28861690 - Trub2 protein_coding retained_intron MGP_C57BL6NJ_T0007414.1 MGP_C57BL6NJ_G0006080.1 mouse_genomes_project 2 78074700 78080523 - Gm13660 lincRNA lincRNA MGP_C57BL6NJ_T0058103.1 MGP_C57BL6NJ_G0026923.1 mouse_genomes_project 2 138004572 138005384 + MGP_C57BL6NJ_P0058103 1700020A23Rik protein_coding protein_coding MGP_C57BL6NJ_T0058104.1 MGP_C57BL6NJ_G0026923.1 mouse_genomes_project 2 138004578 138005332 + MGP_C57BL6NJ_P0058104 1700020A23Rik protein_coding protein_coding MGP_C57BL6NJ_T0058105.1 MGP_C57BL6NJ_G0026923.1 mouse_genomes_project 2 138004599 138005388 + MGP_C57BL6NJ_P0058105 1700020A23Rik protein_coding protein_coding MGP_C57BL6NJ_T0010564.1 MGP_C57BL6NJ_G0008649.1 mouse_genomes_project 2 8035417 8035521 + Gm23578 miRNA miRNA MGP_C57BL6NJ_T0004224.1 MGP_C57BL6NJ_G0003739.1 mouse_genomes_project 2 132559226 132561835 + A530010F05Rik antisense antisense MGP_C57BL6NJ_T0099372.1 MGP_C57BL6NJ_G0037430.1 mouse_genomes_project 2 60012296 60042503 + Gm13558 sense_intronic sense_intronic MGP_C57BL6NJ_T0059711.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175780952 175813485 - MGP_C57BL6NJ_P0059711 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059712.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175782076 175819138 - MGP_C57BL6NJ_P0059712 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059713.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175782076 175819138 - MGP_C57BL6NJ_P0059713 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059714.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175782076 175789641 - MGP_C57BL6NJ_P0059714 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059715.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175784033 175819138 - MGP_C57BL6NJ_P0059715 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059716.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175784038 175809562 - MGP_C57BL6NJ_P0059716 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059717.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175790942 175806965 - Elmo2 protein_coding processed_transcript MGP_C57BL6NJ_T0059718.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175791331 175804410 - MGP_C57BL6NJ_P0059718 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059719.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175797357 175804300 - Elmo2 protein_coding retained_intron MGP_C57BL6NJ_T0059720.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175801570 175809010 - MGP_C57BL6NJ_P0059720 Elmo2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059721.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175804337 175809234 - MGP_C57BL6NJ_P0059721 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0059722.1 MGP_C57BL6NJ_G0027313.1 mouse_genomes_project 2 175808330 175819138 - MGP_C57BL6NJ_P0059722 Elmo2 protein_coding protein_coding MGP_C57BL6NJ_T0014045.1 MGP_C57BL6NJ_G0012090.1 mouse_genomes_project 2 116223577 116224565 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013811.1 MGP_C57BL6NJ_G0011856.1 mouse_genomes_project 2 34552156 34552323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055787.1 MGP_C57BL6NJ_G0026258.1 mouse_genomes_project 2 76042930 76063850 - MGP_C57BL6NJ_P0055787 Chrna1 protein_coding protein_coding MGP_C57BL6NJ_T0013727.1 MGP_C57BL6NJ_G0011772.1 mouse_genomes_project 2 687386 688455 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053561.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24001472 24007365 + MGP_C57BL6NJ_P0053561 Sapcd2 protein_coding protein_coding MGP_C57BL6NJ_T0053562.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24001481 24005955 + MGP_C57BL6NJ_P0053562 Sapcd2 protein_coding protein_coding MGP_C57BL6NJ_T0053563.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24001485 24005955 + MGP_C57BL6NJ_P0053563 Sapcd2 protein_coding protein_coding MGP_C57BL6NJ_T0053564.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24001511 24004294 + Sapcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0053565.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24004172 24005424 + Sapcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0053566.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24004925 24005929 + Sapcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0053567.1 MGP_C57BL6NJ_G0025859.1 mouse_genomes_project 2 24005111 24005952 + Sapcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0054635.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32130299 32135681 - Cdk9 protein_coding retained_intron MGP_C57BL6NJ_T0054636.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32132471 32137710 - MGP_C57BL6NJ_P0054636 Cdk9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054637.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32132668 32137290 - MGP_C57BL6NJ_P0054637 Cdk9 protein_coding protein_coding MGP_C57BL6NJ_T0054638.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32132734 32134355 - Cdk9 protein_coding retained_intron MGP_C57BL6NJ_T0054639.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32134165 32134983 - Cdk9 protein_coding retained_intron MGP_C57BL6NJ_T0054640.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32134289 32135136 - Cdk9 protein_coding retained_intron MGP_C57BL6NJ_T0054641.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32134489 32137391 - MGP_C57BL6NJ_P0054641 Cdk9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054642.1 MGP_C57BL6NJ_G0026036.1 mouse_genomes_project 2 32134791 32136887 - MGP_C57BL6NJ_P0054642 Cdk9 protein_coding protein_coding MGP_C57BL6NJ_T0057088.1 MGP_C57BL6NJ_G0026673.1 mouse_genomes_project 2 117257326 117300208 - MGP_C57BL6NJ_P0057088 4930430A15Rik protein_coding protein_coding MGP_C57BL6NJ_T0057089.1 MGP_C57BL6NJ_G0026673.1 mouse_genomes_project 2 117288210 117328733 - MGP_C57BL6NJ_P0057089 4930430A15Rik protein_coding protein_coding MGP_C57BL6NJ_T0057090.1 MGP_C57BL6NJ_G0026674.1 mouse_genomes_project 2 117329983 117330922 - MGP_C57BL6NJ_P0057090 Olfr1275 protein_coding protein_coding MGP_C57BL6NJ_T0014186.1 MGP_C57BL6NJ_G0012231.1 mouse_genomes_project 2 175054325 175054581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004141.1 MGP_C57BL6NJ_G0003683.1 mouse_genomes_project 2 68245427 68370328 + Gm13629 antisense antisense MGP_C57BL6NJ_T0013769.1 MGP_C57BL6NJ_G0011814.1 mouse_genomes_project 2 16760961 16761278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058015.1 MGP_C57BL6NJ_G0026899.1 mouse_genomes_project 2 136429227 136449908 - MGP_C57BL6NJ_P0058015 Zc3h8 protein_coding protein_coding MGP_C57BL6NJ_T0055287.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 59866734 59940183 + Upp2 protein_coding processed_transcript MGP_C57BL6NJ_T0055288.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 59866754 59885186 + Upp2 protein_coding processed_transcript MGP_C57BL6NJ_T0055289.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 59866823 60099917 + MGP_C57BL6NJ_P0055289 Upp2 protein_coding protein_coding MGP_C57BL6NJ_T0055290.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 60062028 60098191 + MGP_C57BL6NJ_P0055290 Upp2 protein_coding protein_coding MGP_C57BL6NJ_T0055291.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 60062266 60097617 + MGP_C57BL6NJ_P0055291 Upp2 protein_coding protein_coding MGP_C57BL6NJ_T0055292.1 MGP_C57BL6NJ_G0026169.1 mouse_genomes_project 2 60072287 60097251 + Upp2 protein_coding processed_transcript MGP_C57BL6NJ_T0013972.1 MGP_C57BL6NJ_G0012017.1 mouse_genomes_project 2 91269672 91270078 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060365.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193741301 193748339 + Tcea2 protein_coding retained_intron MGP_C57BL6NJ_T0060366.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193741301 193749063 + MGP_C57BL6NJ_P0060366 Tcea2 protein_coding protein_coding MGP_C57BL6NJ_T0060367.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193742181 193749043 + MGP_C57BL6NJ_P0060367 Tcea2 protein_coding protein_coding MGP_C57BL6NJ_T0060368.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193743876 193749037 + MGP_C57BL6NJ_P0060368 Tcea2 protein_coding protein_coding MGP_C57BL6NJ_T0060369.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193744157 193747284 + Tcea2 protein_coding processed_transcript MGP_C57BL6NJ_T0060370.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193744566 193748903 + Tcea2 protein_coding retained_intron MGP_C57BL6NJ_T0060371.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193744592 193747926 + Tcea2 protein_coding retained_intron MGP_C57BL6NJ_T0060372.1 MGP_C57BL6NJ_G0027453.1 mouse_genomes_project 2 193748507 193749054 + Tcea2 protein_coding processed_transcript MGP_C57BL6NJ_T0056279.1 MGP_C57BL6NJ_G0026446.1 mouse_genomes_project 2 91785694 91786645 + MGP_C57BL6NJ_P0056279 Olfr152 protein_coding protein_coding MGP_C57BL6NJ_T0056280.1 MGP_C57BL6NJ_G0026446.1 mouse_genomes_project 2 91785700 91786645 + MGP_C57BL6NJ_P0056280 Olfr152 protein_coding protein_coding MGP_C57BL6NJ_T0013985.1 MGP_C57BL6NJ_G0012030.1 mouse_genomes_project 2 94525926 94526412 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101476.1 MGP_C57BL6NJ_G0039522.1 mouse_genomes_project 2 31596048 31596133 + Gm25632 snoRNA snoRNA MGP_C57BL6NJ_T0100219.1 MGP_C57BL6NJ_G0038265.1 mouse_genomes_project 2 140800729 140800897 + Gm25704 snRNA snRNA MGP_C57BL6NJ_T0013875.1 MGP_C57BL6NJ_G0011920.1 mouse_genomes_project 2 58521247 58524109 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103061.1 MGP_C57BL6NJ_G0040855.1 mouse_genomes_project 2 185276273 185336372 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0053318.1 MGP_C57BL6NJ_G0025813.1 mouse_genomes_project 2 21452508 21502285 - MGP_C57BL6NJ_P0053318 Mastl protein_coding protein_coding MGP_C57BL6NJ_T0053319.1 MGP_C57BL6NJ_G0025813.1 mouse_genomes_project 2 21482958 21502158 - Mastl protein_coding processed_transcript MGP_C57BL6NJ_T0018244.1 MGP_C57BL6NJ_G0015815.1 mouse_genomes_project 2 60674919 60679100 - 5330411J11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018245.1 MGP_C57BL6NJ_G0015815.1 mouse_genomes_project 2 60676210 60679856 - 5330411J11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0014033.1 MGP_C57BL6NJ_G0012078.1 mouse_genomes_project 2 111712405 111712561 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013993.1 MGP_C57BL6NJ_G0012038.1 mouse_genomes_project 2 96955301 96955991 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010621.1 MGP_C57BL6NJ_G0008706.1 mouse_genomes_project 2 28508090 28508170 - Mir133c miRNA miRNA MGP_C57BL6NJ_T0011788.1 MGP_C57BL6NJ_G0009873.1 mouse_genomes_project 2 185842493 185842618 + Gm27849 misc_RNA misc_RNA MGP_C57BL6NJ_T0018294.1 MGP_C57BL6NJ_G0015846.1 mouse_genomes_project 2 115918821 115929745 - Platr8 processed_transcript processed_transcript MGP_C57BL6NJ_T0014106.1 MGP_C57BL6NJ_G0012151.1 mouse_genomes_project 2 144754863 144755333 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014116.1 MGP_C57BL6NJ_G0012161.1 mouse_genomes_project 2 151574567 151575187 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101511.1 MGP_C57BL6NJ_G0039557.1 mouse_genomes_project 2 118051550 118051682 + Gm26421 snoRNA snoRNA MGP_C57BL6NJ_T0056536.1 MGP_C57BL6NJ_G0026567.1 mouse_genomes_project 2 95787325 95813788 - Ddb2 protein_coding processed_transcript MGP_C57BL6NJ_T0056537.1 MGP_C57BL6NJ_G0026567.1 mouse_genomes_project 2 95787341 95815340 - Ddb2 protein_coding processed_transcript MGP_C57BL6NJ_T0056538.1 MGP_C57BL6NJ_G0026567.1 mouse_genomes_project 2 95787356 95815318 - MGP_C57BL6NJ_P0056538 Ddb2 protein_coding protein_coding MGP_C57BL6NJ_T0056539.1 MGP_C57BL6NJ_G0026567.1 mouse_genomes_project 2 95787374 95815393 - Ddb2 protein_coding processed_transcript MGP_C57BL6NJ_T0056540.1 MGP_C57BL6NJ_G0026567.1 mouse_genomes_project 2 95787609 95815415 - MGP_C57BL6NJ_P0056540 Ddb2 protein_coding protein_coding MGP_C57BL6NJ_T0004198.1 MGP_C57BL6NJ_G0003719.1 mouse_genomes_project 2 111228403 111377347 - Pax6os1 antisense antisense MGP_C57BL6NJ_T0004199.1 MGP_C57BL6NJ_G0003719.1 mouse_genomes_project 2 111229243 111377297 - Pax6os1 antisense antisense MGP_C57BL6NJ_T0014158.1 MGP_C57BL6NJ_G0012203.1 mouse_genomes_project 2 164312322 164332418 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058040.1 MGP_C57BL6NJ_G0026907.1 mouse_genomes_project 2 136800021 136830724 - MGP_C57BL6NJ_P0058040 Ckap2l protein_coding protein_coding MGP_C57BL6NJ_T0014167.1 MGP_C57BL6NJ_G0012212.1 mouse_genomes_project 2 165956028 165956667 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004130.1 MGP_C57BL6NJ_G0003674.1 mouse_genomes_project 2 61917077 61920243 + Gm13583 antisense antisense MGP_C57BL6NJ_T0004131.1 MGP_C57BL6NJ_G0003674.1 mouse_genomes_project 2 61917079 61917202 + Gm13583 antisense antisense MGP_C57BL6NJ_T0004132.1 MGP_C57BL6NJ_G0003674.1 mouse_genomes_project 2 61918674 61919594 + Gm13583 antisense antisense MGP_C57BL6NJ_T0059574.1 MGP_C57BL6NJ_G0027277.1 mouse_genomes_project 2 174840494 174843908 - MGP_C57BL6NJ_P0059574 Trp53tg5 protein_coding protein_coding MGP_C57BL6NJ_T0001198.1 MGP_C57BL6NJ_G0001104.1 mouse_genomes_project 2 35510554 35513542 + TEC TEC MGP_C57BL6NJ_T0058414.1 MGP_C57BL6NJ_G0026990.1 mouse_genomes_project 2 148421995 148457492 + MGP_C57BL6NJ_P0058414 Ndufaf5 protein_coding protein_coding MGP_C57BL6NJ_T0058415.1 MGP_C57BL6NJ_G0026990.1 mouse_genomes_project 2 148422059 148423661 + Ndufaf5 protein_coding retained_intron MGP_C57BL6NJ_T0058416.1 MGP_C57BL6NJ_G0026990.1 mouse_genomes_project 2 148422376 148457435 + Ndufaf5 protein_coding processed_transcript MGP_C57BL6NJ_T0060108.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191992290 191997314 - MGP_C57BL6NJ_P0060108 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060109.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191992476 191996977 - MGP_C57BL6NJ_P0060109 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060110.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191992703 191996977 - MGP_C57BL6NJ_P0060110 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060111.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191992703 191996977 - MGP_C57BL6NJ_P0060111 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060112.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191993104 191997000 - MGP_C57BL6NJ_P0060112 Hrh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060113.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191993321 191996977 - MGP_C57BL6NJ_P0060113 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060114.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191993321 191996977 - MGP_C57BL6NJ_P0060114 Hrh3 protein_coding protein_coding MGP_C57BL6NJ_T0060115.1 MGP_C57BL6NJ_G0027407.1 mouse_genomes_project 2 191993809 191996161 - Hrh3 protein_coding retained_intron MGP_C57BL6NJ_T0057820.1 MGP_C57BL6NJ_G0026855.1 mouse_genomes_project 2 133145182 133175535 - MGP_C57BL6NJ_P0057820 Cops2 protein_coding protein_coding MGP_C57BL6NJ_T0057821.1 MGP_C57BL6NJ_G0026855.1 mouse_genomes_project 2 133146477 133175435 - MGP_C57BL6NJ_P0057821 Cops2 protein_coding protein_coding MGP_C57BL6NJ_T0057822.1 MGP_C57BL6NJ_G0026855.1 mouse_genomes_project 2 133146480 133175535 - MGP_C57BL6NJ_P0057822 Cops2 protein_coding protein_coding MGP_C57BL6NJ_T0057823.1 MGP_C57BL6NJ_G0026855.1 mouse_genomes_project 2 133159106 133175392 - Cops2 protein_coding processed_transcript MGP_C57BL6NJ_T0057824.1 MGP_C57BL6NJ_G0026855.1 mouse_genomes_project 2 133166152 133175459 - Cops2 protein_coding processed_transcript MGP_C57BL6NJ_T0010706.1 MGP_C57BL6NJ_G0008791.1 mouse_genomes_project 2 168159335 168159397 - Mir7685 miRNA miRNA MGP_C57BL6NJ_T0054967.1 MGP_C57BL6NJ_G0026113.1 mouse_genomes_project 2 37164723 37176131 - MGP_C57BL6NJ_P0054967 Zbtb26 protein_coding protein_coding MGP_C57BL6NJ_T0054968.1 MGP_C57BL6NJ_G0026113.1 mouse_genomes_project 2 37167573 37176130 - MGP_C57BL6NJ_P0054968 Zbtb26 protein_coding protein_coding MGP_C57BL6NJ_T0054969.1 MGP_C57BL6NJ_G0026113.1 mouse_genomes_project 2 37171034 37176145 - Zbtb26 protein_coding processed_transcript MGP_C57BL6NJ_T0101484.1 MGP_C57BL6NJ_G0039530.1 mouse_genomes_project 2 43020654 43020786 + Gm24350 snoRNA snoRNA MGP_C57BL6NJ_T0013887.1 MGP_C57BL6NJ_G0011932.1 mouse_genomes_project 2 61434602 61434911 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013832.1 MGP_C57BL6NJ_G0011877.1 mouse_genomes_project 2 39454607 39455199 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007505.1 MGP_C57BL6NJ_G0006152.1 mouse_genomes_project 2 141286225 141288892 + Gm14100 lincRNA lincRNA MGP_C57BL6NJ_T0010689.1 MGP_C57BL6NJ_G0008774.1 mouse_genomes_project 2 136428530 136428652 - Gm22859 miRNA miRNA MGP_C57BL6NJ_T0018337.1 MGP_C57BL6NJ_G0015864.1 mouse_genomes_project 2 138146800 138168638 - 4930473A02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0007373.1 MGP_C57BL6NJ_G0006046.1 mouse_genomes_project 2 52198207 52216050 - 1700057H21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007374.1 MGP_C57BL6NJ_G0006046.1 mouse_genomes_project 2 52198273 52215165 - 1700057H21Rik lincRNA lincRNA MGP_C57BL6NJ_T0013876.1 MGP_C57BL6NJ_G0011921.1 mouse_genomes_project 2 58682019 58682562 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056169.1 MGP_C57BL6NJ_G0026349.1 mouse_genomes_project 2 89134400 89135704 - MGP_C57BL6NJ_P0056169 protein_coding protein_coding MGP_C57BL6NJ_T0055472.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67037988 67084808 - MGP_C57BL6NJ_P0055472 Slc38a11 protein_coding protein_coding MGP_C57BL6NJ_T0055473.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67038043 67085264 - MGP_C57BL6NJ_P0055473 Slc38a11 protein_coding protein_coding MGP_C57BL6NJ_T0055474.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67043852 67085379 - MGP_C57BL6NJ_P0055474 Slc38a11 protein_coding protein_coding MGP_C57BL6NJ_T0055475.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67070183 67085379 - Slc38a11 protein_coding processed_transcript MGP_C57BL6NJ_T0055476.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67070747 67085345 - MGP_C57BL6NJ_P0055476 Slc38a11 protein_coding protein_coding MGP_C57BL6NJ_T0055477.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67073596 67085268 - Slc38a11 protein_coding processed_transcript MGP_C57BL6NJ_T0055478.1 MGP_C57BL6NJ_G0026196.1 mouse_genomes_project 2 67075505 67085375 - Slc38a11 protein_coding processed_transcript MGP_C57BL6NJ_T0007424.1 MGP_C57BL6NJ_G0006088.1 mouse_genomes_project 2 86322755 86349154 - Gm28675 lincRNA lincRNA MGP_C57BL6NJ_T0057974.1 MGP_C57BL6NJ_G0026890.1 mouse_genomes_project 2 135211723 135243998 - MGP_C57BL6NJ_P0057974 Bub1 protein_coding protein_coding MGP_C57BL6NJ_T0057975.1 MGP_C57BL6NJ_G0026890.1 mouse_genomes_project 2 135215105 135215868 - Bub1 protein_coding retained_intron MGP_C57BL6NJ_T0057976.1 MGP_C57BL6NJ_G0026890.1 mouse_genomes_project 2 135221176 135226102 - Bub1 protein_coding processed_transcript MGP_C57BL6NJ_T0057977.1 MGP_C57BL6NJ_G0026890.1 mouse_genomes_project 2 135222771 135227145 - Bub1 protein_coding processed_transcript MGP_C57BL6NJ_T0057978.1 MGP_C57BL6NJ_G0026890.1 mouse_genomes_project 2 135235639 135243937 - Bub1 protein_coding retained_intron MGP_C57BL6NJ_T0007370.1 MGP_C57BL6NJ_G0006043.1 mouse_genomes_project 2 51982232 51982713 + Gm28639 lincRNA lincRNA MGP_C57BL6NJ_T0053482.1 MGP_C57BL6NJ_G0025842.1 mouse_genomes_project 2 23816509 23820045 + MGP_C57BL6NJ_P0053482 Fam166a protein_coding protein_coding MGP_C57BL6NJ_T0053483.1 MGP_C57BL6NJ_G0025842.1 mouse_genomes_project 2 23819122 23820045 + Fam166a protein_coding processed_transcript MGP_C57BL6NJ_T0018252.1 MGP_C57BL6NJ_G0015821.1 mouse_genomes_project 2 75854263 75890055 + D230022J07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0059046.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165376627 165387495 - MGP_C57BL6NJ_P0059046 Eif6 protein_coding protein_coding MGP_C57BL6NJ_T0059047.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165376632 165379276 - Eif6 protein_coding processed_transcript MGP_C57BL6NJ_T0059048.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165376828 165387006 - MGP_C57BL6NJ_P0059048 Eif6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059049.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165379632 165387006 - Eif6 protein_coding retained_intron MGP_C57BL6NJ_T0059050.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165379632 165387006 - MGP_C57BL6NJ_P0059050 Eif6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059051.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165380670 165387336 - MGP_C57BL6NJ_P0059051 Eif6 protein_coding protein_coding MGP_C57BL6NJ_T0059052.1 MGP_C57BL6NJ_G0027169.1 mouse_genomes_project 2 165385735 165387233 - MGP_C57BL6NJ_P0059052 Eif6 protein_coding protein_coding MGP_C57BL6NJ_T0052899.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3819229 4750521 - MGP_C57BL6NJ_P0052899 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052900.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3819240 4181689 - MGP_C57BL6NJ_P0052900 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052901.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3819240 4181689 - MGP_C57BL6NJ_P0052901 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052902.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3819240 4017118 - MGP_C57BL6NJ_P0052902 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052903.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3821397 4181689 - MGP_C57BL6NJ_P0052903 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052904.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3822956 4391746 - MGP_C57BL6NJ_P0052904 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052905.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3824334 4181640 - MGP_C57BL6NJ_P0052905 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052906.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3824368 4017118 - MGP_C57BL6NJ_P0052906 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052907.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3824368 4391686 - MGP_C57BL6NJ_P0052907 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052908.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3825162 4017431 - MGP_C57BL6NJ_P0052908 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052909.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3825767 4017116 - MGP_C57BL6NJ_P0052909 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052910.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3825767 4017116 - MGP_C57BL6NJ_P0052910 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052911.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3825861 4181639 - MGP_C57BL6NJ_P0052911 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052912.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3826396 4169253 - MGP_C57BL6NJ_P0052912 Celf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052913.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3826409 3878341 - Celf2 protein_coding processed_transcript MGP_C57BL6NJ_T0052914.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3833426 4750414 - MGP_C57BL6NJ_P0052914 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052915.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3868947 4017118 - Celf2 protein_coding retained_intron MGP_C57BL6NJ_T0052916.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3889750 3903034 - Celf2 protein_coding processed_transcript MGP_C57BL6NJ_T0052917.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3893344 4181321 - Celf2 protein_coding processed_transcript MGP_C57BL6NJ_T0052918.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3902582 4750719 - MGP_C57BL6NJ_P0052918 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052919.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3907092 4181585 - Celf2 protein_coding retained_intron MGP_C57BL6NJ_T0052920.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3910381 4017719 - Celf2 protein_coding retained_intron MGP_C57BL6NJ_T0052921.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3911557 4168628 - MGP_C57BL6NJ_P0052921 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052922.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3949929 4181585 - Celf2 protein_coding retained_intron MGP_C57BL6NJ_T0052923.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 3953639 4391651 - MGP_C57BL6NJ_P0052923 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052924.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 4016958 4017712 - MGP_C57BL6NJ_P0052924 Celf2 protein_coding protein_coding MGP_C57BL6NJ_T0052925.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 4385333 4391757 - Celf2 protein_coding processed_transcript MGP_C57BL6NJ_T0052926.1 MGP_C57BL6NJ_G0025747.1 mouse_genomes_project 2 4748596 4852467 - Celf2 protein_coding processed_transcript MGP_C57BL6NJ_T0056200.1 MGP_C57BL6NJ_G0026378.1 mouse_genomes_project 2 89804587 89805547 - MGP_C57BL6NJ_P0056200 Olfr52 protein_coding protein_coding MGP_C57BL6NJ_T0018222.1 MGP_C57BL6NJ_G0015802.1 mouse_genomes_project 2 29462596 29485327 - Gm14471 processed_transcript processed_transcript MGP_C57BL6NJ_T0100223.1 MGP_C57BL6NJ_G0038269.1 mouse_genomes_project 2 147788696 147788800 + Gm27385 snRNA snRNA MGP_C57BL6NJ_T0013798.1 MGP_C57BL6NJ_G0011843.1 mouse_genomes_project 2 27766483 27766703 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010612.1 MGP_C57BL6NJ_G0008697.1 mouse_genomes_project 2 23645218 23645281 + Mir7664 miRNA miRNA MGP_C57BL6NJ_T0007589.1 MGP_C57BL6NJ_G0006223.1 mouse_genomes_project 2 181294266 181295871 - Gm17619 lincRNA lincRNA MGP_C57BL6NJ_T0058069.1 MGP_C57BL6NJ_G0026916.1 mouse_genomes_project 2 137752185 137760075 - Snrpb protein_coding retained_intron MGP_C57BL6NJ_T0058070.1 MGP_C57BL6NJ_G0026916.1 mouse_genomes_project 2 137752406 137760175 - MGP_C57BL6NJ_P0058070 Snrpb protein_coding protein_coding MGP_C57BL6NJ_T0058071.1 MGP_C57BL6NJ_G0026916.1 mouse_genomes_project 2 137752558 137760175 - MGP_C57BL6NJ_P0058071 Snrpb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058072.1 MGP_C57BL6NJ_G0026916.1 mouse_genomes_project 2 137757623 137760106 - Snrpb protein_coding retained_intron MGP_C57BL6NJ_T0013964.1 MGP_C57BL6NJ_G0012009.1 mouse_genomes_project 2 89304358 89304554 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057019.1 MGP_C57BL6NJ_G0026654.1 mouse_genomes_project 2 111660648 111700454 - Dnajc24 protein_coding processed_transcript MGP_C57BL6NJ_T0057020.1 MGP_C57BL6NJ_G0026654.1 mouse_genomes_project 2 111660828 111700307 - MGP_C57BL6NJ_P0057020 Dnajc24 protein_coding protein_coding MGP_C57BL6NJ_T0057021.1 MGP_C57BL6NJ_G0026654.1 mouse_genomes_project 2 111660876 111700393 - Dnajc24 protein_coding processed_transcript MGP_C57BL6NJ_T0057022.1 MGP_C57BL6NJ_G0026654.1 mouse_genomes_project 2 111664300 111699268 - Dnajc24 protein_coding processed_transcript MGP_C57BL6NJ_T0010711.1 MGP_C57BL6NJ_G0008796.1 mouse_genomes_project 2 173306949 173307015 + Mir7003 miRNA miRNA MGP_C57BL6NJ_T0059492.1 MGP_C57BL6NJ_G0027247.1 mouse_genomes_project 2 173772397 173782644 + MGP_C57BL6NJ_P0059492 R3hdml protein_coding protein_coding MGP_C57BL6NJ_T0053341.1 MGP_C57BL6NJ_G0025821.1 mouse_genomes_project 2 22664185 22675734 + MGP_C57BL6NJ_P0053341 Il1f9 protein_coding protein_coding MGP_C57BL6NJ_T0013799.1 MGP_C57BL6NJ_G0011844.1 mouse_genomes_project 2 27782537 27782661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007379.1 MGP_C57BL6NJ_G0006050.1 mouse_genomes_project 2 56541988 56546335 - Gm26794 lincRNA lincRNA MGP_C57BL6NJ_T0054948.1 MGP_C57BL6NJ_G0026105.1 mouse_genomes_project 2 36823290 36824244 - MGP_C57BL6NJ_P0054948 Olfr362 protein_coding protein_coding MGP_C57BL6NJ_T0014169.1 MGP_C57BL6NJ_G0012214.1 mouse_genomes_project 2 166017833 166020401 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058470.1 MGP_C57BL6NJ_G0027004.1 mouse_genomes_project 2 152846323 152872930 - MGP_C57BL6NJ_P0058470 Ovol2 protein_coding protein_coding MGP_C57BL6NJ_T0058471.1 MGP_C57BL6NJ_G0027004.1 mouse_genomes_project 2 152846323 152873381 - MGP_C57BL6NJ_P0058471 Ovol2 protein_coding protein_coding MGP_C57BL6NJ_T0058472.1 MGP_C57BL6NJ_G0027004.1 mouse_genomes_project 2 152858859 152872561 - Ovol2 protein_coding processed_transcript MGP_C57BL6NJ_T0013839.1 MGP_C57BL6NJ_G0011884.1 mouse_genomes_project 2 41023145 41023498 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058123.1 MGP_C57BL6NJ_G0026927.1 mouse_genomes_project 2 138051464 138157101 + MGP_C57BL6NJ_P0058123 Ptpra protein_coding protein_coding MGP_C57BL6NJ_T0058124.1 MGP_C57BL6NJ_G0026927.1 mouse_genomes_project 2 138051730 138157098 + MGP_C57BL6NJ_P0058124 Ptpra protein_coding protein_coding MGP_C57BL6NJ_T0058125.1 MGP_C57BL6NJ_G0026927.1 mouse_genomes_project 2 138105347 138156543 + MGP_C57BL6NJ_P0058125 Ptpra protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004113.1 MGP_C57BL6NJ_G0003661.1 mouse_genomes_project 2 38063779 38065764 + Gm13556 antisense antisense MGP_C57BL6NJ_T0054087.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28660677 28798988 + MGP_C57BL6NJ_P0054087 Rapgef1 protein_coding protein_coding MGP_C57BL6NJ_T0054088.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28660706 28799612 + MGP_C57BL6NJ_P0054088 Rapgef1 protein_coding protein_coding MGP_C57BL6NJ_T0054089.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28660771 28796952 + MGP_C57BL6NJ_P0054089 Rapgef1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054090.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28660797 28796695 + MGP_C57BL6NJ_P0054090 Rapgef1 protein_coding protein_coding MGP_C57BL6NJ_T0054091.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28788184 28794473 + Rapgef1 protein_coding processed_transcript MGP_C57BL6NJ_T0054092.1 MGP_C57BL6NJ_G0025957.1 mouse_genomes_project 2 28789964 28791629 + Rapgef1 protein_coding retained_intron MGP_C57BL6NJ_T0014095.1 MGP_C57BL6NJ_G0012140.1 mouse_genomes_project 2 139537968 139540613 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010713.1 MGP_C57BL6NJ_G0008798.1 mouse_genomes_project 2 176489828 176490766 - miRNA miRNA MGP_C57BL6NJ_T0010635.1 MGP_C57BL6NJ_G0008720.1 mouse_genomes_project 2 32137440 32137522 - Mir2861 miRNA miRNA MGP_C57BL6NJ_T0059432.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171063022 171233758 - MGP_C57BL6NJ_P0059432 Chd6 protein_coding protein_coding MGP_C57BL6NJ_T0059433.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171075776 171077355 - Chd6 protein_coding processed_transcript MGP_C57BL6NJ_T0059434.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171075897 171080630 - Chd6 protein_coding processed_transcript MGP_C57BL6NJ_T0059435.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171096320 171100885 - Chd6 protein_coding retained_intron MGP_C57BL6NJ_T0059436.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171099022 171233758 - MGP_C57BL6NJ_P0059436 Chd6 protein_coding protein_coding MGP_C57BL6NJ_T0059437.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171107296 171127034 - Chd6 protein_coding retained_intron MGP_C57BL6NJ_T0059438.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171126574 171233811 - Chd6 protein_coding retained_intron MGP_C57BL6NJ_T0059439.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171132632 171136790 - Chd6 protein_coding processed_transcript MGP_C57BL6NJ_T0059440.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171144930 171148593 - Chd6 protein_coding processed_transcript MGP_C57BL6NJ_T0059441.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171148883 171171563 - MGP_C57BL6NJ_P0059441 Chd6 protein_coding protein_coding MGP_C57BL6NJ_T0059442.1 MGP_C57BL6NJ_G0027234.1 mouse_genomes_project 2 171154066 171233740 - Chd6 protein_coding retained_intron MGP_C57BL6NJ_T0013981.1 MGP_C57BL6NJ_G0012026.1 mouse_genomes_project 2 91890952 91891175 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054652.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32185109 32206915 - MGP_C57BL6NJ_P0054652 Ttc16 protein_coding protein_coding MGP_C57BL6NJ_T0054661.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32193708 32207116 - MGP_C57BL6NJ_P0054661 Ttc16 protein_coding protein_coding MGP_C57BL6NJ_T0054662.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32193871 32206969 - MGP_C57BL6NJ_P0054662 Ttc16 protein_coding protein_coding MGP_C57BL6NJ_T0054663.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32195659 32207165 - MGP_C57BL6NJ_P0054663 Ttc16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054664.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32204291 32207119 - Ttc16 protein_coding retained_intron MGP_C57BL6NJ_T0054665.1 MGP_C57BL6NJ_G0026039.1 mouse_genomes_project 2 32206038 32207163 - MGP_C57BL6NJ_P0054665 Ttc16 protein_coding protein_coding MGP_C57BL6NJ_T0007354.1 MGP_C57BL6NJ_G0006030.1 mouse_genomes_project 2 35145388 35147948 + Gm35202 lincRNA lincRNA MGP_C57BL6NJ_T0007383.1 MGP_C57BL6NJ_G0006054.1 mouse_genomes_project 2 63945652 63949915 - Gm13565 lincRNA lincRNA MGP_C57BL6NJ_T0001220.1 MGP_C57BL6NJ_G0001126.1 mouse_genomes_project 2 81820445 81974289 + TEC TEC MGP_C57BL6NJ_T0010643.1 MGP_C57BL6NJ_G0008728.1 mouse_genomes_project 2 42622618 42622748 - Mir6336 miRNA miRNA MGP_C57BL6NJ_T0007486.1 MGP_C57BL6NJ_G0006136.1 mouse_genomes_project 2 127424599 127431393 + Gm26899 lincRNA lincRNA MGP_C57BL6NJ_T0004170.1 MGP_C57BL6NJ_G0003703.1 mouse_genomes_project 2 77253188 77262922 - Hoxd3os1 antisense antisense MGP_C57BL6NJ_T0004171.1 MGP_C57BL6NJ_G0003703.1 mouse_genomes_project 2 77259926 77263394 - Hoxd3os1 antisense antisense MGP_C57BL6NJ_T0004172.1 MGP_C57BL6NJ_G0003703.1 mouse_genomes_project 2 77260076 77266854 - Hoxd3os1 antisense antisense MGP_C57BL6NJ_T0004173.1 MGP_C57BL6NJ_G0003703.1 mouse_genomes_project 2 77263993 77266988 - Hoxd3os1 antisense antisense MGP_C57BL6NJ_T0013879.1 MGP_C57BL6NJ_G0011924.1 mouse_genomes_project 2 59624674 59625156 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060183.1 MGP_C57BL6NJ_G0027424.1 mouse_genomes_project 2 192728173 192730693 - MGP_C57BL6NJ_P0060183 Bhlhe23 protein_coding protein_coding MGP_C57BL6NJ_T0013874.1 MGP_C57BL6NJ_G0011919.1 mouse_genomes_project 2 58462853 58463042 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010696.1 MGP_C57BL6NJ_G0008781.1 mouse_genomes_project 2 153175546 153175637 - Gm24823 miRNA miRNA MGP_C57BL6NJ_T0056311.1 MGP_C57BL6NJ_G0026475.1 mouse_genomes_project 2 92639803 92640715 + MGP_C57BL6NJ_P0056311 Olfr1183 protein_coding protein_coding MGP_C57BL6NJ_T0011777.1 MGP_C57BL6NJ_G0009862.1 mouse_genomes_project 2 154083864 154084189 - Gm22390 misc_RNA misc_RNA MGP_C57BL6NJ_T0102464.1 MGP_C57BL6NJ_G0040353.1 mouse_genomes_project 2 92851099 92852029 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0056727.1 MGP_C57BL6NJ_G0026598.1 mouse_genomes_project 2 98399034 98440054 + MGP_C57BL6NJ_P0056727 Alx4 protein_coding protein_coding MGP_C57BL6NJ_T0056728.1 MGP_C57BL6NJ_G0026598.1 mouse_genomes_project 2 98399038 98440054 + MGP_C57BL6NJ_P0056728 Alx4 protein_coding protein_coding MGP_C57BL6NJ_T0059989.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184417927 184429942 + MGP_C57BL6NJ_P0059989 Rbm38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059990.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184417941 184430757 + Rbm38 protein_coding retained_intron MGP_C57BL6NJ_T0059991.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184418068 184429838 + MGP_C57BL6NJ_P0059991 Rbm38 protein_coding protein_coding MGP_C57BL6NJ_T0059992.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184418139 184429679 + MGP_C57BL6NJ_P0059992 Rbm38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059993.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184418466 184429738 + MGP_C57BL6NJ_P0059993 Rbm38 protein_coding protein_coding MGP_C57BL6NJ_T0059994.1 MGP_C57BL6NJ_G0027375.1 mouse_genomes_project 2 184419078 184430729 + Rbm38 protein_coding retained_intron MGP_C57BL6NJ_T0018340.1 MGP_C57BL6NJ_G0015866.1 mouse_genomes_project 2 138954476 138955770 + Gm14233 processed_transcript processed_transcript MGP_C57BL6NJ_T0010704.1 MGP_C57BL6NJ_G0008789.1 mouse_genomes_project 2 166017865 166017961 - Gm22758 miRNA miRNA MGP_C57BL6NJ_T0054478.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31520703 31605767 + MGP_C57BL6NJ_P0054478 Prrc2b protein_coding protein_coding MGP_C57BL6NJ_T0054479.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31520769 31605752 + MGP_C57BL6NJ_P0054479 Prrc2b protein_coding protein_coding MGP_C57BL6NJ_T0054480.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31553745 31602392 + MGP_C57BL6NJ_P0054480 Prrc2b protein_coding protein_coding MGP_C57BL6NJ_T0054481.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31576759 31590052 + Prrc2b protein_coding processed_transcript MGP_C57BL6NJ_T0054482.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31582591 31589711 + MGP_C57BL6NJ_P0054482 Prrc2b protein_coding protein_coding MGP_C57BL6NJ_T0054483.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31586471 31590006 + MGP_C57BL6NJ_P0054483 Prrc2b protein_coding protein_coding MGP_C57BL6NJ_T0054484.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31587605 31589550 + Prrc2b protein_coding processed_transcript MGP_C57BL6NJ_T0054485.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31587673 31591761 + Prrc2b protein_coding processed_transcript MGP_C57BL6NJ_T0054486.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31589923 31592713 + Prrc2b protein_coding processed_transcript MGP_C57BL6NJ_T0054487.1 MGP_C57BL6NJ_G0026016.1 mouse_genomes_project 2 31590161 31591829 + Prrc2b protein_coding processed_transcript MGP_C57BL6NJ_T0059581.1 MGP_C57BL6NJ_G0027279.1 mouse_genomes_project 2 174872106 174888720 + MGP_C57BL6NJ_P0059581 Pigt protein_coding protein_coding MGP_C57BL6NJ_T0059582.1 MGP_C57BL6NJ_G0027279.1 mouse_genomes_project 2 174872121 174879902 + MGP_C57BL6NJ_P0059582 Pigt protein_coding protein_coding MGP_C57BL6NJ_T0059583.1 MGP_C57BL6NJ_G0027279.1 mouse_genomes_project 2 174872132 174880178 + Pigt protein_coding retained_intron MGP_C57BL6NJ_T0059584.1 MGP_C57BL6NJ_G0027279.1 mouse_genomes_project 2 174872147 174888720 + MGP_C57BL6NJ_P0059584 Pigt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059585.1 MGP_C57BL6NJ_G0027279.1 mouse_genomes_project 2 174874502 174876224 + Pigt protein_coding retained_intron MGP_C57BL6NJ_T0099083.1 MGP_C57BL6NJ_G0037147.1 mouse_genomes_project 2 153934539 153934633 + Gm22731 rRNA rRNA MGP_C57BL6NJ_T0014079.1 MGP_C57BL6NJ_G0012124.1 mouse_genomes_project 2 134965857 134966707 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060215.1 MGP_C57BL6NJ_G0027430.1 mouse_genomes_project 2 193012456 193034276 - MGP_C57BL6NJ_P0060215 Chrna4 protein_coding protein_coding MGP_C57BL6NJ_T0060216.1 MGP_C57BL6NJ_G0027430.1 mouse_genomes_project 2 193012457 193022407 - MGP_C57BL6NJ_P0060216 Chrna4 protein_coding protein_coding MGP_C57BL6NJ_T0060217.1 MGP_C57BL6NJ_G0027430.1 mouse_genomes_project 2 193016389 193034506 - MGP_C57BL6NJ_P0060217 Chrna4 protein_coding protein_coding MGP_C57BL6NJ_T0060218.1 MGP_C57BL6NJ_G0027430.1 mouse_genomes_project 2 193023503 193034426 - Chrna4 protein_coding processed_transcript MGP_C57BL6NJ_T0060219.1 MGP_C57BL6NJ_G0027430.1 mouse_genomes_project 2 193028102 193038747 - MGP_C57BL6NJ_P0060219 Chrna4 protein_coding protein_coding MGP_C57BL6NJ_T0059566.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174815639 174820798 + Sys1 protein_coding processed_transcript MGP_C57BL6NJ_T0059567.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174815651 174835706 + MGP_C57BL6NJ_P0059567 Sys1 protein_coding protein_coding MGP_C57BL6NJ_T0059568.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174815763 174821170 + Sys1 protein_coding processed_transcript MGP_C57BL6NJ_T0059570.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174820832 174835702 + MGP_C57BL6NJ_P0059570 Sys1 protein_coding protein_coding MGP_C57BL6NJ_T0059571.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174820861 174844651 + MGP_C57BL6NJ_P0059571 Sys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059572.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174820914 174854137 + MGP_C57BL6NJ_P0059572 Sys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059573.1 MGP_C57BL6NJ_G0027275.1 mouse_genomes_project 2 174821170 174844651 + MGP_C57BL6NJ_P0059573 Sys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056704.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97900960 97913865 + MGP_C57BL6NJ_P0056704 protein_coding protein_coding MGP_C57BL6NJ_T0056705.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97900973 97914395 + protein_coding processed_transcript MGP_C57BL6NJ_T0056706.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97900973 97915254 + protein_coding processed_transcript MGP_C57BL6NJ_T0056707.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97901021 97914865 + MGP_C57BL6NJ_P0056707 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0056708.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97901082 97902975 + protein_coding processed_transcript MGP_C57BL6NJ_T0056709.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97902603 97916703 + protein_coding processed_transcript MGP_C57BL6NJ_T0056710.1 MGP_C57BL6NJ_G0026594.1 mouse_genomes_project 2 97913864 97915544 + protein_coding processed_transcript MGP_C57BL6NJ_T0059615.1 MGP_C57BL6NJ_G0027295.1 mouse_genomes_project 2 175205481 175208062 - MGP_C57BL6NJ_P0059615 Tnnc2 protein_coding protein_coding MGP_C57BL6NJ_T0059616.1 MGP_C57BL6NJ_G0027295.1 mouse_genomes_project 2 175206264 175208288 - Tnnc2 protein_coding processed_transcript MGP_C57BL6NJ_T0057896.1 MGP_C57BL6NJ_G0026869.1 mouse_genomes_project 2 134434017 134450342 + Blvra protein_coding retained_intron MGP_C57BL6NJ_T0057897.1 MGP_C57BL6NJ_G0026869.1 mouse_genomes_project 2 134434019 134459704 + MGP_C57BL6NJ_P0057897 Blvra protein_coding protein_coding MGP_C57BL6NJ_T0057898.1 MGP_C57BL6NJ_G0026869.1 mouse_genomes_project 2 134434031 134452893 + MGP_C57BL6NJ_P0057898 Blvra protein_coding protein_coding MGP_C57BL6NJ_T0057899.1 MGP_C57BL6NJ_G0026869.1 mouse_genomes_project 2 134434045 134449891 + MGP_C57BL6NJ_P0057899 Blvra protein_coding protein_coding MGP_C57BL6NJ_T0057900.1 MGP_C57BL6NJ_G0026869.1 mouse_genomes_project 2 134442922 134454766 + MGP_C57BL6NJ_P0057900 Blvra protein_coding protein_coding MGP_C57BL6NJ_T0013754.1 MGP_C57BL6NJ_G0011799.1 mouse_genomes_project 2 12643790 12644432 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014197.1 MGP_C57BL6NJ_G0012242.1 mouse_genomes_project 2 179155404 179155834 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059371.1 MGP_C57BL6NJ_G0027220.1 mouse_genomes_project 2 168471614 168509759 + MGP_C57BL6NJ_P0059371 Arhgap40 protein_coding protein_coding MGP_C57BL6NJ_T0059372.1 MGP_C57BL6NJ_G0027220.1 mouse_genomes_project 2 168471614 168509893 + MGP_C57BL6NJ_P0059372 Arhgap40 protein_coding protein_coding MGP_C57BL6NJ_T0059373.1 MGP_C57BL6NJ_G0027220.1 mouse_genomes_project 2 168500831 168509893 + Arhgap40 protein_coding retained_intron MGP_C57BL6NJ_T0010585.1 MGP_C57BL6NJ_G0008670.1 mouse_genomes_project 2 8066113 8066216 + Gm22239 miRNA miRNA MGP_C57BL6NJ_T0056988.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111375916 111407196 + MGP_C57BL6NJ_P0056988 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056989.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111375916 111407196 + MGP_C57BL6NJ_P0056989 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056990.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111375936 111406294 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0056991.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111375951 111392401 + MGP_C57BL6NJ_P0056991 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056992.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111378913 111407074 + MGP_C57BL6NJ_P0056992 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056993.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111380926 111382838 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0056994.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382070 111382929 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0056995.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382152 111382784 + Pax6 protein_coding retained_intron MGP_C57BL6NJ_T0056996.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382152 111407075 + MGP_C57BL6NJ_P0056996 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056997.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382394 111407176 + MGP_C57BL6NJ_P0056997 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056998.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382474 111407193 + MGP_C57BL6NJ_P0056998 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0056999.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111382488 111406903 + MGP_C57BL6NJ_P0056999 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0057000.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111383084 111406903 + MGP_C57BL6NJ_P0057000 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0057001.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111383085 111407193 + MGP_C57BL6NJ_P0057001 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0057002.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111386919 111394326 + MGP_C57BL6NJ_P0057002 Pax6 protein_coding protein_coding MGP_C57BL6NJ_T0057003.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111388395 111402058 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057004.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111390240 111393513 + Pax6 protein_coding retained_intron MGP_C57BL6NJ_T0057005.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111390991 111402069 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057006.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111391036 111402101 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057007.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111391063 111406185 + Pax6 protein_coding retained_intron MGP_C57BL6NJ_T0057008.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111391065 111401556 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057009.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111391075 111402079 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057010.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111391165 111401527 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057011.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111392284 111393474 + Pax6 protein_coding retained_intron MGP_C57BL6NJ_T0057012.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111393852 111407196 + Pax6 protein_coding processed_transcript MGP_C57BL6NJ_T0057013.1 MGP_C57BL6NJ_G0026651.1 mouse_genomes_project 2 111402318 111402961 + Pax6 protein_coding retained_intron MGP_C57BL6NJ_T0004060.1 MGP_C57BL6NJ_G0003621.1 mouse_genomes_project 2 18597867 18623044 - Gm17171 antisense antisense MGP_C57BL6NJ_T0055868.1 MGP_C57BL6NJ_G0026280.1 mouse_genomes_project 2 78628552 78633565 - MGP_C57BL6NJ_P0055868 Ttc30a2 protein_coding protein_coding MGP_C57BL6NJ_T0004241.1 MGP_C57BL6NJ_G0003751.1 mouse_genomes_project 2 139831079 139913928 + Gm14051 antisense antisense MGP_C57BL6NJ_T0054244.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440631 29505457 + MGP_C57BL6NJ_P0054244 protein_coding protein_coding MGP_C57BL6NJ_T0054245.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440631 29466298 + MGP_C57BL6NJ_P0054245 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054246.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440651 29460622 + protein_coding processed_transcript MGP_C57BL6NJ_T0054247.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440658 29460340 + MGP_C57BL6NJ_P0054247 protein_coding protein_coding MGP_C57BL6NJ_T0054248.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440661 29460339 + MGP_C57BL6NJ_P0054248 protein_coding protein_coding MGP_C57BL6NJ_T0054249.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29440663 29488027 + protein_coding retained_intron MGP_C57BL6NJ_T0054250.1 MGP_C57BL6NJ_G0025983.1 mouse_genomes_project 2 29504130 29505336 + protein_coding retained_intron MGP_C57BL6NJ_T0056807.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107090268 107181156 - MGP_C57BL6NJ_P0056807 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056808.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107090268 107231351 - MGP_C57BL6NJ_P0056808 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056809.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107092224 107181157 - MGP_C57BL6NJ_P0056809 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056810.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107093233 107181099 - MGP_C57BL6NJ_P0056810 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056811.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107117199 107231351 - MGP_C57BL6NJ_P0056811 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056812.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107135855 107278211 - MGP_C57BL6NJ_P0056812 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056813.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107150863 107181503 - MGP_C57BL6NJ_P0056813 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056814.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107150907 107204247 - MGP_C57BL6NJ_P0056814 Prr5l protein_coding protein_coding MGP_C57BL6NJ_T0056815.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107151018 107181182 - Prr5l protein_coding processed_transcript MGP_C57BL6NJ_T0056816.1 MGP_C57BL6NJ_G0026613.1 mouse_genomes_project 2 107223908 107278224 - Prr5l protein_coding processed_transcript MGP_C57BL6NJ_T0056879.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109248370 109291704 - MGP_C57BL6NJ_P0056879 Nat10 protein_coding protein_coding MGP_C57BL6NJ_T0056880.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109248374 109291675 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056881.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109248374 109291675 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056882.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109248374 109291631 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056883.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109248775 109251544 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056884.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109249041 109291638 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056885.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109258936 109261608 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056886.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109259131 109260374 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056887.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109261453 109269705 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056888.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109265907 109291704 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056889.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109276568 109291360 - MGP_C57BL6NJ_P0056889 Nat10 protein_coding protein_coding MGP_C57BL6NJ_T0056890.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109279368 109291695 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056891.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109283450 109291629 - Nat10 protein_coding retained_intron MGP_C57BL6NJ_T0056892.1 MGP_C57BL6NJ_G0026627.1 mouse_genomes_project 2 109283587 109284768 - MGP_C57BL6NJ_P0056892 Nat10 protein_coding protein_coding MGP_C57BL6NJ_T0053096.1 MGP_C57BL6NJ_G0025774.1 mouse_genomes_project 2 11850488 11877234 - MGP_C57BL6NJ_P0053096 Hacd1 protein_coding protein_coding MGP_C57BL6NJ_T0053097.1 MGP_C57BL6NJ_G0025774.1 mouse_genomes_project 2 11850559 11877349 - MGP_C57BL6NJ_P0053097 Hacd1 protein_coding protein_coding MGP_C57BL6NJ_T0053098.1 MGP_C57BL6NJ_G0025774.1 mouse_genomes_project 2 11850581 11877081 - MGP_C57BL6NJ_P0053098 Hacd1 protein_coding protein_coding MGP_C57BL6NJ_T0001208.1 MGP_C57BL6NJ_G0001114.1 mouse_genomes_project 2 38685290 38688661 + TEC TEC MGP_C57BL6NJ_T0103032.1 MGP_C57BL6NJ_G0040826.1 mouse_genomes_project 2 91880080 91881017 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013955.1 MGP_C57BL6NJ_G0012000.1 mouse_genomes_project 2 86611557 86612041 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007345.1 MGP_C57BL6NJ_G0006023.1 mouse_genomes_project 2 32973236 32987018 + Gm13530 lincRNA lincRNA MGP_C57BL6NJ_T0059121.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165659286 165702693 - MGP_C57BL6NJ_P0059121 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059122.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165659286 165685513 - MGP_C57BL6NJ_P0059122 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059138.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666370 165718088 - MGP_C57BL6NJ_P0059138 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059139.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666370 165718088 - MGP_C57BL6NJ_P0059139 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059140.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666370 165718088 - MGP_C57BL6NJ_P0059140 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059141.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666532 165702718 - MGP_C57BL6NJ_P0059141 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059142.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666538 165684356 - MGP_C57BL6NJ_P0059142 Gm28036 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059143.1 MGP_C57BL6NJ_G0027180.1 mouse_genomes_project 2 165666865 165702723 - MGP_C57BL6NJ_P0059143 Gm28036 protein_coding protein_coding MGP_C57BL6NJ_T0059786.1 MGP_C57BL6NJ_G0027326.1 mouse_genomes_project 2 177498943 177597757 + MGP_C57BL6NJ_P0059786 Arfgef2 protein_coding protein_coding MGP_C57BL6NJ_T0059787.1 MGP_C57BL6NJ_G0027326.1 mouse_genomes_project 2 177520126 177547642 + MGP_C57BL6NJ_P0059787 Arfgef2 protein_coding protein_coding MGP_C57BL6NJ_T0011754.1 MGP_C57BL6NJ_G0009839.1 mouse_genomes_project 2 33318352 33318722 + Nron misc_RNA misc_RNA MGP_C57BL6NJ_T0059883.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179117764 179143074 - MGP_C57BL6NJ_P0059883 protein_coding protein_coding MGP_C57BL6NJ_T0059884.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179118997 179128979 - protein_coding retained_intron MGP_C57BL6NJ_T0059885.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179118997 179143286 - MGP_C57BL6NJ_P0059885 protein_coding protein_coding MGP_C57BL6NJ_T0059886.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179118998 179127258 - protein_coding retained_intron MGP_C57BL6NJ_T0059887.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179119232 179121978 - protein_coding retained_intron MGP_C57BL6NJ_T0059888.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179119258 179143023 - MGP_C57BL6NJ_P0059888 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059889.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179119304 179134113 - protein_coding retained_intron MGP_C57BL6NJ_T0059890.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179120100 179142771 - protein_coding processed_transcript MGP_C57BL6NJ_T0059891.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179128891 179142925 - protein_coding retained_intron MGP_C57BL6NJ_T0059892.1 MGP_C57BL6NJ_G0027347.1 mouse_genomes_project 2 179130752 179143057 - protein_coding retained_intron MGP_C57BL6NJ_T0004203.1 MGP_C57BL6NJ_G0003722.1 mouse_genomes_project 2 117347326 117356674 - Gm13962 antisense antisense MGP_C57BL6NJ_T0056248.1 MGP_C57BL6NJ_G0026423.1 mouse_genomes_project 2 91324313 91325258 + MGP_C57BL6NJ_P0056248 Olfr1120 protein_coding protein_coding MGP_C57BL6NJ_T0004323.1 MGP_C57BL6NJ_G0003813.1 mouse_genomes_project 2 181545061 181546925 + Bcas1os1 antisense antisense MGP_C57BL6NJ_T0057787.1 MGP_C57BL6NJ_G0026844.1 mouse_genomes_project 2 132332225 132352778 + MGP_C57BL6NJ_P0057787 Slc24a5 protein_coding protein_coding MGP_C57BL6NJ_T0057788.1 MGP_C57BL6NJ_G0026844.1 mouse_genomes_project 2 132333344 132347327 + Slc24a5 protein_coding processed_transcript MGP_C57BL6NJ_T0057789.1 MGP_C57BL6NJ_G0026844.1 mouse_genomes_project 2 132344455 132347180 + Slc24a5 protein_coding retained_intron MGP_C57BL6NJ_T0013848.1 MGP_C57BL6NJ_G0011893.1 mouse_genomes_project 2 48995594 48995908 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004102.1 MGP_C57BL6NJ_G0003653.1 mouse_genomes_project 2 32319065 32321312 - Gm13523 antisense antisense MGP_C57BL6NJ_T0100174.1 MGP_C57BL6NJ_G0038220.1 mouse_genomes_project 2 8695846 8695979 - Gm26478 snRNA snRNA MGP_C57BL6NJ_T0053497.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23844244 23854807 - MGP_C57BL6NJ_P0053497 Ndor1 protein_coding protein_coding MGP_C57BL6NJ_T0053498.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23844286 23854810 - MGP_C57BL6NJ_P0053498 Ndor1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053499.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23844993 23847410 - Ndor1 protein_coding processed_transcript MGP_C57BL6NJ_T0053500.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23846652 23854833 - MGP_C57BL6NJ_P0053500 Ndor1 protein_coding protein_coding MGP_C57BL6NJ_T0053501.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23846851 23854810 - MGP_C57BL6NJ_P0053501 Ndor1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053502.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23847010 23847895 - Ndor1 protein_coding retained_intron MGP_C57BL6NJ_T0053503.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23848895 23854770 - MGP_C57BL6NJ_P0053503 Ndor1 protein_coding protein_coding MGP_C57BL6NJ_T0053504.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23848923 23849766 - Ndor1 protein_coding retained_intron MGP_C57BL6NJ_T0053505.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23849547 23854840 - MGP_C57BL6NJ_P0053505 Ndor1 protein_coding protein_coding MGP_C57BL6NJ_T0053506.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23849598 23854792 - Ndor1 protein_coding processed_transcript MGP_C57BL6NJ_T0053507.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23850911 23854685 - Ndor1 protein_coding retained_intron MGP_C57BL6NJ_T0053508.1 MGP_C57BL6NJ_G0025848.1 mouse_genomes_project 2 23851171 23855446 - MGP_C57BL6NJ_P0053508 Ndor1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0004093.1 MGP_C57BL6NJ_G0003644.1 mouse_genomes_project 2 30033973 30037554 + 4930527E20Rik antisense antisense MGP_C57BL6NJ_T0103052.1 MGP_C57BL6NJ_G0040846.1 mouse_genomes_project 2 128460024 128465951 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011757.1 MGP_C57BL6NJ_G0009842.1 mouse_genomes_project 2 45497539 45497670 + Gm27761 misc_RNA misc_RNA MGP_C57BL6NJ_T0056622.1 MGP_C57BL6NJ_G0026580.1 mouse_genomes_project 2 96541981 96543865 - MGP_C57BL6NJ_P0056622 Mdk protein_coding protein_coding MGP_C57BL6NJ_T0056623.1 MGP_C57BL6NJ_G0026580.1 mouse_genomes_project 2 96542004 96544487 - MGP_C57BL6NJ_P0056623 Mdk protein_coding protein_coding MGP_C57BL6NJ_T0056624.1 MGP_C57BL6NJ_G0026580.1 mouse_genomes_project 2 96542004 96543957 - MGP_C57BL6NJ_P0056624 Mdk protein_coding protein_coding MGP_C57BL6NJ_T0056625.1 MGP_C57BL6NJ_G0026580.1 mouse_genomes_project 2 96542142 96543876 - MGP_C57BL6NJ_P0056625 Mdk protein_coding protein_coding MGP_C57BL6NJ_T0004046.1 MGP_C57BL6NJ_G0003609.1 mouse_genomes_project 2 7409267 7410782 + Gm13256 antisense antisense MGP_C57BL6NJ_T0059930.1 MGP_C57BL6NJ_G0027355.1 mouse_genomes_project 2 180692793 180986539 + MGP_C57BL6NJ_P0059930 Tshz2 protein_coding protein_coding MGP_C57BL6NJ_T0059931.1 MGP_C57BL6NJ_G0027355.1 mouse_genomes_project 2 180693459 180961152 + MGP_C57BL6NJ_P0059931 Tshz2 protein_coding protein_coding MGP_C57BL6NJ_T0059932.1 MGP_C57BL6NJ_G0027355.1 mouse_genomes_project 2 180957540 181157755 + MGP_C57BL6NJ_P0059932 Tshz2 protein_coding protein_coding MGP_C57BL6NJ_T0059933.1 MGP_C57BL6NJ_G0027355.1 mouse_genomes_project 2 180957540 181157755 + MGP_C57BL6NJ_P0059933 Tshz2 protein_coding protein_coding MGP_C57BL6NJ_T0059934.1 MGP_C57BL6NJ_G0027355.1 mouse_genomes_project 2 180958482 180986539 + MGP_C57BL6NJ_P0059934 Tshz2 protein_coding protein_coding MGP_C57BL6NJ_T0011758.1 MGP_C57BL6NJ_G0009843.1 mouse_genomes_project 2 45500464 45500525 + Gm27676 misc_RNA misc_RNA MGP_C57BL6NJ_T0057869.1 MGP_C57BL6NJ_G0026865.1 mouse_genomes_project 2 134067894 134151085 - MGP_C57BL6NJ_P0057869 Usp50 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057870.1 MGP_C57BL6NJ_G0026865.1 mouse_genomes_project 2 134125857 134135272 - Usp50 protein_coding processed_transcript MGP_C57BL6NJ_T0057871.1 MGP_C57BL6NJ_G0026865.1 mouse_genomes_project 2 134126228 134151091 - MGP_C57BL6NJ_P0057871 Usp50 protein_coding protein_coding MGP_C57BL6NJ_T0057872.1 MGP_C57BL6NJ_G0026865.1 mouse_genomes_project 2 134143296 134151084 - MGP_C57BL6NJ_P0057872 Usp50 protein_coding protein_coding MGP_C57BL6NJ_T0057873.1 MGP_C57BL6NJ_G0026865.1 mouse_genomes_project 2 134145260 134151105 - Usp50 protein_coding retained_intron MGP_C57BL6NJ_T0013903.1 MGP_C57BL6NJ_G0011948.1 mouse_genomes_project 2 68251315 68251687 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056095.1 MGP_C57BL6NJ_G0026322.1 mouse_genomes_project 2 88010723 88020278 + MGP_C57BL6NJ_P0056095 Med19 protein_coding protein_coding MGP_C57BL6NJ_T0056096.1 MGP_C57BL6NJ_G0026322.1 mouse_genomes_project 2 88017695 88019562 + Med19 protein_coding processed_transcript MGP_C57BL6NJ_T0053342.1 MGP_C57BL6NJ_G0025822.1 mouse_genomes_project 2 22692357 22702652 + MGP_C57BL6NJ_P0053342 Il1f6 protein_coding protein_coding MGP_C57BL6NJ_T0053343.1 MGP_C57BL6NJ_G0025822.1 mouse_genomes_project 2 22692444 22702475 + Il1f6 protein_coding processed_transcript MGP_C57BL6NJ_T0100172.1 MGP_C57BL6NJ_G0038218.1 mouse_genomes_project 2 2403281 2403468 - Gm23118 snRNA snRNA MGP_C57BL6NJ_T0004278.1 MGP_C57BL6NJ_G0003777.1 mouse_genomes_project 2 161680503 161684801 - Gm14161 antisense antisense MGP_C57BL6NJ_T0018260.1 MGP_C57BL6NJ_G0015829.1 mouse_genomes_project 2 91051820 91057954 - Gm13734 processed_transcript processed_transcript MGP_C57BL6NJ_T0007458.1 MGP_C57BL6NJ_G0006115.1 mouse_genomes_project 2 112331741 112337791 - Gm14014 lincRNA lincRNA MGP_C57BL6NJ_T0004339.1 MGP_C57BL6NJ_G0003823.1 mouse_genomes_project 2 191992738 191994328 + Gm17180 antisense antisense MGP_C57BL6NJ_T0100233.1 MGP_C57BL6NJ_G0038279.1 mouse_genomes_project 2 192638845 192638956 + Gm22502 snRNA snRNA MGP_C57BL6NJ_T0058031.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136727698 136733194 + MGP_C57BL6NJ_P0058031 Slc20a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058032.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136727715 136741477 + MGP_C57BL6NJ_P0058032 Slc20a1 protein_coding protein_coding MGP_C57BL6NJ_T0058033.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136727752 136730059 + Slc20a1 protein_coding retained_intron MGP_C57BL6NJ_T0058034.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136727754 136733985 + Slc20a1 protein_coding processed_transcript MGP_C57BL6NJ_T0058035.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136727754 136730057 + Slc20a1 protein_coding retained_intron MGP_C57BL6NJ_T0058036.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136728095 136728697 + MGP_C57BL6NJ_P0058036 Slc20a1 protein_coding protein_coding MGP_C57BL6NJ_T0058037.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136728248 136741470 + MGP_C57BL6NJ_P0058037 Slc20a1 protein_coding protein_coding MGP_C57BL6NJ_T0058038.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136735192 136737131 + Slc20a1 protein_coding retained_intron MGP_C57BL6NJ_T0058039.1 MGP_C57BL6NJ_G0026906.1 mouse_genomes_project 2 136736232 136736899 + Slc20a1 protein_coding retained_intron MGP_C57BL6NJ_T0013833.1 MGP_C57BL6NJ_G0011878.1 mouse_genomes_project 2 39471354 39472451 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101470.1 MGP_C57BL6NJ_G0039516.1 mouse_genomes_project 2 25410072 25410204 - Snora17 snoRNA snoRNA MGP_C57BL6NJ_T0056925.1 MGP_C57BL6NJ_G0026632.1 mouse_genomes_project 2 109623527 109625188 + MGP_C57BL6NJ_P0056925 Gm10912 protein_coding protein_coding MGP_C57BL6NJ_T0004213.1 MGP_C57BL6NJ_G0003728.1 mouse_genomes_project 2 122012892 122041963 - Gm13977 antisense antisense MGP_C57BL6NJ_T0055443.1 MGP_C57BL6NJ_G0026192.1 mouse_genomes_project 2 64229680 64764594 - MGP_C57BL6NJ_P0055443 Kcnh7 protein_coding protein_coding MGP_C57BL6NJ_T0055444.1 MGP_C57BL6NJ_G0026192.1 mouse_genomes_project 2 64331015 64764603 - MGP_C57BL6NJ_P0055444 Kcnh7 protein_coding protein_coding MGP_C57BL6NJ_T0055445.1 MGP_C57BL6NJ_G0026192.1 mouse_genomes_project 2 64331101 64764486 - MGP_C57BL6NJ_P0055445 Kcnh7 protein_coding protein_coding MGP_C57BL6NJ_T0055446.1 MGP_C57BL6NJ_G0026192.1 mouse_genomes_project 2 64761784 64764578 - Kcnh7 protein_coding processed_transcript MGP_C57BL6NJ_T0058897.1 MGP_C57BL6NJ_G0027135.1 mouse_genomes_project 2 163564916 163585606 + MGP_C57BL6NJ_P0058897 Bpifb5 protein_coding protein_coding MGP_C57BL6NJ_T0056306.1 MGP_C57BL6NJ_G0026471.1 mouse_genomes_project 2 92581558 92582488 - MGP_C57BL6NJ_P0056306 Olfr1180 protein_coding protein_coding MGP_C57BL6NJ_T0001160.1 MGP_C57BL6NJ_G0001066.1 mouse_genomes_project 2 8977243 8978132 + TEC TEC MGP_C57BL6NJ_T0054395.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30415777 30487821 + MGP_C57BL6NJ_P0054395 Gpr107 protein_coding protein_coding MGP_C57BL6NJ_T0054396.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30415794 30433798 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054397.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30415812 30459827 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054398.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30415812 30419063 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054399.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30436902 30452572 + Gpr107 protein_coding processed_transcript MGP_C57BL6NJ_T0054400.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30452997 30478204 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054401.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30453327 30456464 + Gpr107 protein_coding processed_transcript MGP_C57BL6NJ_T0054402.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30456482 30478386 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054403.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30465949 30476753 + Gpr107 protein_coding processed_transcript MGP_C57BL6NJ_T0054404.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30475677 30479108 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0054405.1 MGP_C57BL6NJ_G0026001.1 mouse_genomes_project 2 30479145 30483612 + Gpr107 protein_coding retained_intron MGP_C57BL6NJ_T0052830.1 MGP_C57BL6NJ_G0025733.1 mouse_genomes_project 2 2082220 2093357 + MGP_C57BL6NJ_P0052830 Ucma protein_coding protein_coding MGP_C57BL6NJ_T0052831.1 MGP_C57BL6NJ_G0025733.1 mouse_genomes_project 2 2082223 2088929 + Ucma protein_coding processed_transcript MGP_C57BL6NJ_T0052832.1 MGP_C57BL6NJ_G0025733.1 mouse_genomes_project 2 2082249 2093349 + MGP_C57BL6NJ_P0052832 Ucma protein_coding protein_coding MGP_C57BL6NJ_T0052833.1 MGP_C57BL6NJ_G0025733.1 mouse_genomes_project 2 2082279 2093354 + MGP_C57BL6NJ_P0052833 Ucma protein_coding protein_coding MGP_C57BL6NJ_T0052834.1 MGP_C57BL6NJ_G0025733.1 mouse_genomes_project 2 2082282 2093254 + MGP_C57BL6NJ_P0052834 Ucma protein_coding protein_coding MGP_C57BL6NJ_T0059505.1 MGP_C57BL6NJ_G0027250.1 mouse_genomes_project 2 173909119 173932928 - MGP_C57BL6NJ_P0059505 Serinc3 protein_coding protein_coding MGP_C57BL6NJ_T0059506.1 MGP_C57BL6NJ_G0027250.1 mouse_genomes_project 2 173923411 173932922 - Serinc3 protein_coding processed_transcript MGP_C57BL6NJ_T0004283.1 MGP_C57BL6NJ_G0003782.1 mouse_genomes_project 2 165080265 165090154 - Acss2os antisense antisense MGP_C57BL6NJ_T0057728.1 MGP_C57BL6NJ_G0026831.1 mouse_genomes_project 2 129346439 129366142 - MGP_C57BL6NJ_P0057728 Duox2 protein_coding protein_coding MGP_C57BL6NJ_T0057729.1 MGP_C57BL6NJ_G0026831.1 mouse_genomes_project 2 129347629 129362369 - MGP_C57BL6NJ_P0057729 Duox2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057730.1 MGP_C57BL6NJ_G0026831.1 mouse_genomes_project 2 129349900 129352762 - Duox2 protein_coding processed_transcript MGP_C57BL6NJ_T0057654.1 MGP_C57BL6NJ_G0026811.1 mouse_genomes_project 2 128356533 128383699 - MGP_C57BL6NJ_P0057654 Catsper2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057655.1 MGP_C57BL6NJ_G0026811.1 mouse_genomes_project 2 128356918 128383611 - MGP_C57BL6NJ_P0057655 Catsper2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057656.1 MGP_C57BL6NJ_G0026811.1 mouse_genomes_project 2 128358257 128384398 - MGP_C57BL6NJ_P0057656 Catsper2 protein_coding protein_coding MGP_C57BL6NJ_T0057657.1 MGP_C57BL6NJ_G0026811.1 mouse_genomes_project 2 128358259 128361682 - Catsper2 protein_coding retained_intron MGP_C57BL6NJ_T0057658.1 MGP_C57BL6NJ_G0026811.1 mouse_genomes_project 2 128375295 128378186 - Catsper2 protein_coding retained_intron MGP_C57BL6NJ_T0060142.1 MGP_C57BL6NJ_G0027414.1 mouse_genomes_project 2 192233704 192243271 - MGP_C57BL6NJ_P0060142 Gata5 protein_coding protein_coding MGP_C57BL6NJ_T0018347.1 MGP_C57BL6NJ_G0015870.1 mouse_genomes_project 2 159587724 159591762 + Gm14123 processed_transcript processed_transcript MGP_C57BL6NJ_T0013784.1 MGP_C57BL6NJ_G0011829.1 mouse_genomes_project 2 21893880 21894328 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100205.1 MGP_C57BL6NJ_G0038251.1 mouse_genomes_project 2 116233311 116233418 + Gm22997 snRNA snRNA MGP_C57BL6NJ_T0013995.1 MGP_C57BL6NJ_G0012040.1 mouse_genomes_project 2 97565292 97565715 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056164.1 MGP_C57BL6NJ_G0026344.1 mouse_genomes_project 2 88873741 88874854 - MGP_C57BL6NJ_P0056164 Olfr995 protein_coding protein_coding MGP_C57BL6NJ_T0053677.1 MGP_C57BL6NJ_G0025878.1 mouse_genomes_project 2 24275015 24278380 - MGP_C57BL6NJ_P0053677 Fcna protein_coding protein_coding MGP_C57BL6NJ_T0053678.1 MGP_C57BL6NJ_G0025878.1 mouse_genomes_project 2 24275314 24277638 - Fcna protein_coding processed_transcript MGP_C57BL6NJ_T0060324.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193571814 193607271 + MGP_C57BL6NJ_P0060324 Dnajc5 protein_coding protein_coding MGP_C57BL6NJ_T0060325.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193571855 193604394 + MGP_C57BL6NJ_P0060325 Dnajc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060326.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193571880 193604377 + MGP_C57BL6NJ_P0060326 Dnajc5 protein_coding protein_coding MGP_C57BL6NJ_T0060327.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193572141 193600917 + MGP_C57BL6NJ_P0060327 Dnajc5 protein_coding protein_coding MGP_C57BL6NJ_T0060328.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193572276 193601735 + MGP_C57BL6NJ_P0060328 Dnajc5 protein_coding protein_coding MGP_C57BL6NJ_T0060329.1 MGP_C57BL6NJ_G0027447.1 mouse_genomes_project 2 193601470 193602403 + Dnajc5 protein_coding processed_transcript MGP_C57BL6NJ_T0013728.1 MGP_C57BL6NJ_G0011773.1 mouse_genomes_project 2 1066579 1067876 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056438.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381300 95402443 + MGP_C57BL6NJ_P0056438 Mtch2 protein_coding protein_coding MGP_C57BL6NJ_T0056439.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381323 95401021 + MGP_C57BL6NJ_P0056439 Mtch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056440.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381335 95382460 + Mtch2 protein_coding processed_transcript MGP_C57BL6NJ_T0056441.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381376 95402273 + MGP_C57BL6NJ_P0056441 Mtch2 protein_coding protein_coding MGP_C57BL6NJ_T0056442.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381398 95385766 + Mtch2 protein_coding retained_intron MGP_C57BL6NJ_T0056443.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381418 95402273 + MGP_C57BL6NJ_P0056443 Mtch2 protein_coding protein_coding MGP_C57BL6NJ_T0056444.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95381432 95401024 + Mtch2 protein_coding processed_transcript MGP_C57BL6NJ_T0056445.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95386336 95389893 + Mtch2 protein_coding retained_intron MGP_C57BL6NJ_T0056446.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95386971 95391010 + Mtch2 protein_coding retained_intron MGP_C57BL6NJ_T0056447.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95396872 95401104 + Mtch2 protein_coding retained_intron MGP_C57BL6NJ_T0056448.1 MGP_C57BL6NJ_G0026554.1 mouse_genomes_project 2 95399091 95401021 + Mtch2 protein_coding retained_intron MGP_C57BL6NJ_T0059556.1 MGP_C57BL6NJ_G0027272.1 mouse_genomes_project 2 174742115 174757825 - MGP_C57BL6NJ_P0059556 Matn4 protein_coding protein_coding MGP_C57BL6NJ_T0059557.1 MGP_C57BL6NJ_G0027272.1 mouse_genomes_project 2 174742115 174757827 - MGP_C57BL6NJ_P0059557 Matn4 protein_coding protein_coding MGP_C57BL6NJ_T0059558.1 MGP_C57BL6NJ_G0027272.1 mouse_genomes_project 2 174742115 174758373 - MGP_C57BL6NJ_P0059558 Matn4 protein_coding protein_coding MGP_C57BL6NJ_T0059559.1 MGP_C57BL6NJ_G0027272.1 mouse_genomes_project 2 174742115 174757825 - MGP_C57BL6NJ_P0059559 Matn4 protein_coding protein_coding MGP_C57BL6NJ_T0059560.1 MGP_C57BL6NJ_G0027272.1 mouse_genomes_project 2 174746511 174757826 - Matn4 protein_coding retained_intron MGP_C57BL6NJ_T0060168.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192595258 192643129 - MGP_C57BL6NJ_P0060168 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060169.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192607016 192650778 - MGP_C57BL6NJ_P0060169 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060170.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192607018 192616734 - MGP_C57BL6NJ_P0060170 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060171.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192607941 192643129 - MGP_C57BL6NJ_P0060171 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060172.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192621836 192650778 - MGP_C57BL6NJ_P0060172 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060173.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192621851 192643129 - MGP_C57BL6NJ_P0060173 Dido1 protein_coding protein_coding MGP_C57BL6NJ_T0060174.1 MGP_C57BL6NJ_G0027421.1 mouse_genomes_project 2 192625806 192642771 - Dido1 protein_coding processed_transcript MGP_C57BL6NJ_T0014089.1 MGP_C57BL6NJ_G0012134.1 mouse_genomes_project 2 137999755 138000588 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058263.1 MGP_C57BL6NJ_G0026956.1 mouse_genomes_project 2 139605161 139642487 + MGP_C57BL6NJ_P0058263 Prn protein_coding protein_coding MGP_C57BL6NJ_T0058264.1 MGP_C57BL6NJ_G0026956.1 mouse_genomes_project 2 139605161 139642487 + MGP_C57BL6NJ_P0058264 Prn protein_coding protein_coding MGP_C57BL6NJ_T0057940.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134828247 134836583 - MGP_C57BL6NJ_P0057940 Fahd2a protein_coding protein_coding MGP_C57BL6NJ_T0057941.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134828248 134836598 - Fahd2a protein_coding retained_intron MGP_C57BL6NJ_T0057942.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134828303 134830352 - Fahd2a protein_coding processed_transcript MGP_C57BL6NJ_T0057943.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134828869 134836590 - Fahd2a protein_coding processed_transcript MGP_C57BL6NJ_T0057944.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134830154 134836513 - Fahd2a protein_coding processed_transcript MGP_C57BL6NJ_T0057945.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134830443 134836549 - Fahd2a protein_coding retained_intron MGP_C57BL6NJ_T0057946.1 MGP_C57BL6NJ_G0026881.1 mouse_genomes_project 2 134832463 134836541 - Fahd2a protein_coding processed_transcript MGP_C57BL6NJ_T0013869.1 MGP_C57BL6NJ_G0011914.1 mouse_genomes_project 2 55359266 55359817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004296.1 MGP_C57BL6NJ_G0003794.1 mouse_genomes_project 2 170954368 171003601 - Gm16751 antisense antisense MGP_C57BL6NJ_T0056196.1 MGP_C57BL6NJ_G0026374.1 mouse_genomes_project 2 89731197 89755294 - MGP_C57BL6NJ_P0056196 Olfr1039 protein_coding protein_coding MGP_C57BL6NJ_T0007455.1 MGP_C57BL6NJ_G0006112.1 mouse_genomes_project 2 111364950 111367781 - Paupar lincRNA lincRNA MGP_C57BL6NJ_T0013786.1 MGP_C57BL6NJ_G0011831.1 mouse_genomes_project 2 22654555 22656039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057444.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127193270 127230787 - MGP_C57BL6NJ_P0057444 Vps39 protein_coding protein_coding MGP_C57BL6NJ_T0057445.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127193270 127230775 - MGP_C57BL6NJ_P0057445 Vps39 protein_coding protein_coding MGP_C57BL6NJ_T0057446.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127193620 127230771 - Vps39 protein_coding processed_transcript MGP_C57BL6NJ_T0057447.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127194836 127196392 - Vps39 protein_coding retained_intron MGP_C57BL6NJ_T0057448.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127196655 127200300 - Vps39 protein_coding retained_intron MGP_C57BL6NJ_T0057449.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127198664 127230759 - Vps39 protein_coding retained_intron MGP_C57BL6NJ_T0057450.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127202677 127211127 - Vps39 protein_coding retained_intron MGP_C57BL6NJ_T0057451.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127216125 127221867 - Vps39 protein_coding processed_transcript MGP_C57BL6NJ_T0057452.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127220913 127230771 - Vps39 protein_coding processed_transcript MGP_C57BL6NJ_T0057453.1 MGP_C57BL6NJ_G0026785.1 mouse_genomes_project 2 127226126 127230775 - Vps39 protein_coding processed_transcript MGP_C57BL6NJ_T0001192.1 MGP_C57BL6NJ_G0001098.1 mouse_genomes_project 2 31897789 31901950 + TEC TEC MGP_C57BL6NJ_T0056170.1 MGP_C57BL6NJ_G0026350.1 mouse_genomes_project 2 89145623 89150154 - MGP_C57BL6NJ_P0056170 Olfr1006 protein_coding protein_coding MGP_C57BL6NJ_T0056171.1 MGP_C57BL6NJ_G0026350.1 mouse_genomes_project 2 89145623 89146586 - MGP_C57BL6NJ_P0056171 Olfr1006 protein_coding protein_coding MGP_C57BL6NJ_T0018217.1 MGP_C57BL6NJ_G0015798.1 mouse_genomes_project 2 26781372 26785500 - 2810430I11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0055278.1 MGP_C57BL6NJ_G0026166.1 mouse_genomes_project 2 59554584 59643428 - MGP_C57BL6NJ_P0055278 Acvr1c protein_coding protein_coding MGP_C57BL6NJ_T0055279.1 MGP_C57BL6NJ_G0026166.1 mouse_genomes_project 2 59554584 59643428 - MGP_C57BL6NJ_P0055279 Acvr1c protein_coding protein_coding MGP_C57BL6NJ_T0055280.1 MGP_C57BL6NJ_G0026166.1 mouse_genomes_project 2 59554767 59643356 - MGP_C57BL6NJ_P0055280 Acvr1c protein_coding protein_coding MGP_C57BL6NJ_T0055281.1 MGP_C57BL6NJ_G0026166.1 mouse_genomes_project 2 59580765 59610886 - MGP_C57BL6NJ_P0055281 Acvr1c protein_coding protein_coding MGP_C57BL6NJ_T0001211.1 MGP_C57BL6NJ_G0001117.1 mouse_genomes_project 2 69835172 69839967 + TEC TEC MGP_C57BL6NJ_T0004094.1 MGP_C57BL6NJ_G0003645.1 mouse_genomes_project 2 30478515 30480393 - Gm13405 antisense antisense MGP_C57BL6NJ_T0056365.1 MGP_C57BL6NJ_G0026520.1 mouse_genomes_project 2 93868395 93869313 - MGP_C57BL6NJ_P0056365 Olfr1243 protein_coding protein_coding MGP_C57BL6NJ_T0056366.1 MGP_C57BL6NJ_G0026520.1 mouse_genomes_project 2 93868998 93872000 - Olfr1243 protein_coding processed_transcript MGP_C57BL6NJ_T0010583.1 MGP_C57BL6NJ_G0008668.1 mouse_genomes_project 2 8063633 8065637 + miRNA miRNA MGP_C57BL6NJ_T0103053.1 MGP_C57BL6NJ_G0040847.1 mouse_genomes_project 2 129093460 129095815 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102223.1 MGP_C57BL6NJ_G0040226.1 mouse_genomes_project 2 139536929 139537169 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0059375.1 MGP_C57BL6NJ_G0027222.1 mouse_genomes_project 2 168587270 168603278 + Actr5 protein_coding retained_intron MGP_C57BL6NJ_T0059376.1 MGP_C57BL6NJ_G0027222.1 mouse_genomes_project 2 168587270 168591540 + Actr5 protein_coding retained_intron MGP_C57BL6NJ_T0059377.1 MGP_C57BL6NJ_G0027222.1 mouse_genomes_project 2 168587270 168603278 + MGP_C57BL6NJ_P0059377 Actr5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059378.1 MGP_C57BL6NJ_G0027222.1 mouse_genomes_project 2 168587270 168603291 + MGP_C57BL6NJ_P0059378 Actr5 protein_coding protein_coding MGP_C57BL6NJ_T0059379.1 MGP_C57BL6NJ_G0027222.1 mouse_genomes_project 2 168594011 168600777 + Actr5 protein_coding processed_transcript MGP_C57BL6NJ_T0013742.1 MGP_C57BL6NJ_G0011787.1 mouse_genomes_project 2 8475749 8476560 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053213.1 MGP_C57BL6NJ_G0025794.1 mouse_genomes_project 2 16994893 17156731 - MGP_C57BL6NJ_P0053213 Pip4k2a protein_coding protein_coding MGP_C57BL6NJ_T0053214.1 MGP_C57BL6NJ_G0025794.1 mouse_genomes_project 2 16997009 17021908 - MGP_C57BL6NJ_P0053214 Pip4k2a protein_coding protein_coding MGP_C57BL6NJ_T0053215.1 MGP_C57BL6NJ_G0025794.1 mouse_genomes_project 2 17002045 17061943 - MGP_C57BL6NJ_P0053215 Pip4k2a protein_coding protein_coding MGP_C57BL6NJ_T0014135.1 MGP_C57BL6NJ_G0012180.1 mouse_genomes_project 2 156373692 156374022 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098856.1 MGP_C57BL6NJ_G0036920.1 mouse_genomes_project 2 12432527 12433149 - pseudogene pseudogene MGP_C57BL6NJ_T0055601.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71894934 71903075 + MGP_C57BL6NJ_P0055601 Phospho2 protein_coding protein_coding MGP_C57BL6NJ_T0055602.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71894947 71905692 + MGP_C57BL6NJ_P0055602 Phospho2 protein_coding protein_coding MGP_C57BL6NJ_T0055603.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71894961 71905692 + MGP_C57BL6NJ_P0055603 Phospho2 protein_coding protein_coding MGP_C57BL6NJ_T0055604.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71894971 71899381 + Phospho2 protein_coding processed_transcript MGP_C57BL6NJ_T0055605.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71895023 71908600 + Phospho2 protein_coding processed_transcript MGP_C57BL6NJ_T0055606.1 MGP_C57BL6NJ_G0026224.1 mouse_genomes_project 2 71897878 71905691 + MGP_C57BL6NJ_P0055606 Phospho2 protein_coding protein_coding MGP_C57BL6NJ_T0103038.1 MGP_C57BL6NJ_G0040832.1 mouse_genomes_project 2 92676795 92677707 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0053693.1 MGP_C57BL6NJ_G0025887.1 mouse_genomes_project 2 24458510 24461773 + MGP_C57BL6NJ_P0053693 Lcn11 protein_coding protein_coding MGP_C57BL6NJ_T0007325.1 MGP_C57BL6NJ_G0006009.1 mouse_genomes_project 2 23084822 23107524 - Gm13417 lincRNA lincRNA MGP_C57BL6NJ_T0056304.1 MGP_C57BL6NJ_G0026469.1 mouse_genomes_project 2 92557109 92558081 + MGP_C57BL6NJ_P0056304 Olfr1178 protein_coding protein_coding MGP_C57BL6NJ_T0056087.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001164 88002720 - MGP_C57BL6NJ_P0056087 2700094K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0056088.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001170 88002658 - MGP_C57BL6NJ_P0056088 2700094K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0056089.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001256 88002626 - MGP_C57BL6NJ_P0056089 2700094K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0056090.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001644 88002647 - MGP_C57BL6NJ_P0056090 2700094K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0056091.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001899 88002626 - 2700094K13Rik protein_coding retained_intron MGP_C57BL6NJ_T0056092.1 MGP_C57BL6NJ_G0026320.1 mouse_genomes_project 2 88001966 88002604 - MGP_C57BL6NJ_P0056092 2700094K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0058129.1 MGP_C57BL6NJ_G0026930.1 mouse_genomes_project 2 138187375 138189310 - MGP_C57BL6NJ_P0058129 Avp protein_coding protein_coding MGP_C57BL6NJ_T0001213.1 MGP_C57BL6NJ_G0001119.1 mouse_genomes_project 2 70916539 70919768 + TEC TEC MGP_C57BL6NJ_T0056046.1 MGP_C57BL6NJ_G0026312.1 mouse_genomes_project 2 87049532 87120012 + MGP_C57BL6NJ_P0056046 Fam171b protein_coding protein_coding MGP_C57BL6NJ_T0056047.1 MGP_C57BL6NJ_G0026312.1 mouse_genomes_project 2 87100125 87102511 + Fam171b protein_coding processed_transcript MGP_C57BL6NJ_T0056014.1 MGP_C57BL6NJ_G0026305.1 mouse_genomes_project 2 83597630 83612672 + MGP_C57BL6NJ_P0056014 Dusp19 protein_coding protein_coding MGP_C57BL6NJ_T0056015.1 MGP_C57BL6NJ_G0026305.1 mouse_genomes_project 2 83597685 83612741 + Dusp19 protein_coding processed_transcript MGP_C57BL6NJ_T0056016.1 MGP_C57BL6NJ_G0026305.1 mouse_genomes_project 2 83597811 83611835 + Dusp19 protein_coding processed_transcript MGP_C57BL6NJ_T0056017.1 MGP_C57BL6NJ_G0026305.1 mouse_genomes_project 2 83597816 83604858 + Dusp19 protein_coding processed_transcript MGP_C57BL6NJ_T0056019.1 MGP_C57BL6NJ_G0026305.1 mouse_genomes_project 2 83597851 83613372 + Dusp19 protein_coding processed_transcript MGP_C57BL6NJ_T0010646.1 MGP_C57BL6NJ_G0008731.1 mouse_genomes_project 2 57993325 57993422 + Mir195b miRNA miRNA MGP_C57BL6NJ_T0013997.1 MGP_C57BL6NJ_G0012042.1 mouse_genomes_project 2 98712196 98712776 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053735.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24765016 24807235 - MGP_C57BL6NJ_P0053735 Nacc2 protein_coding protein_coding MGP_C57BL6NJ_T0053736.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24765016 24841989 - MGP_C57BL6NJ_P0053736 Nacc2 protein_coding protein_coding MGP_C57BL6NJ_T0053737.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24770377 24771804 - Nacc2 protein_coding processed_transcript MGP_C57BL6NJ_T0053738.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24773683 24806877 - Nacc2 protein_coding processed_transcript MGP_C57BL6NJ_T0053739.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24773805 24805433 - Nacc2 protein_coding processed_transcript MGP_C57BL6NJ_T0053740.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24804864 24842391 - Nacc2 protein_coding processed_transcript MGP_C57BL6NJ_T0053741.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24805143 24841954 - MGP_C57BL6NJ_P0053741 Nacc2 protein_coding protein_coding MGP_C57BL6NJ_T0053742.1 MGP_C57BL6NJ_G0025894.1 mouse_genomes_project 2 24805385 24841959 - Nacc2 protein_coding processed_transcript MGP_C57BL6NJ_T0052774.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 453191 483053 - MGP_C57BL6NJ_P0052774 protein_coding protein_coding MGP_C57BL6NJ_T0052775.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 453317 454504 - protein_coding retained_intron MGP_C57BL6NJ_T0052776.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 455299 456385 - protein_coding retained_intron MGP_C57BL6NJ_T0052777.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 464816 466935 - protein_coding retained_intron MGP_C57BL6NJ_T0052778.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 469331 472588 - protein_coding retained_intron MGP_C57BL6NJ_T0052779.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 474765 482996 - MGP_C57BL6NJ_P0052779 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052780.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 476647 483029 - MGP_C57BL6NJ_P0052780 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052781.1 MGP_C57BL6NJ_G0025725.1 mouse_genomes_project 2 481126 482982 - protein_coding retained_intron MGP_C57BL6NJ_T0011751.1 MGP_C57BL6NJ_G0009836.1 mouse_genomes_project 2 19560690 19560867 - Gm23007 misc_RNA misc_RNA MGP_C57BL6NJ_T0007538.1 MGP_C57BL6NJ_G0006180.1 mouse_genomes_project 2 166188853 166196495 + Gm14168 lincRNA lincRNA MGP_C57BL6NJ_T0004099.1 MGP_C57BL6NJ_G0003650.1 mouse_genomes_project 2 31365145 31365846 - Gm13609 antisense antisense MGP_C57BL6NJ_T0057554.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953288 127961789 + MGP_C57BL6NJ_P0057554 Ccndbp1 protein_coding protein_coding MGP_C57BL6NJ_T0057555.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953317 127960005 + MGP_C57BL6NJ_P0057555 Ccndbp1 protein_coding protein_coding MGP_C57BL6NJ_T0057556.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953333 127961789 + MGP_C57BL6NJ_P0057556 Ccndbp1 protein_coding protein_coding MGP_C57BL6NJ_T0057557.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953352 127957833 + Ccndbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0057558.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953357 127961398 + MGP_C57BL6NJ_P0057558 Ccndbp1 protein_coding protein_coding MGP_C57BL6NJ_T0057559.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127953589 127955463 + Ccndbp1 protein_coding retained_intron MGP_C57BL6NJ_T0057560.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127955939 127956641 + Ccndbp1 protein_coding retained_intron MGP_C57BL6NJ_T0057561.1 MGP_C57BL6NJ_G0026798.1 mouse_genomes_project 2 127957375 127957845 + Ccndbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0007606.1 MGP_C57BL6NJ_G0006239.1 mouse_genomes_project 2 192809523 192813357 + lincRNA lincRNA MGP_C57BL6NJ_T0013844.1 MGP_C57BL6NJ_G0011889.1 mouse_genomes_project 2 46250023 46251022 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007438.1 MGP_C57BL6NJ_G0006099.1 mouse_genomes_project 2 99036926 99050752 - lincRNA lincRNA MGP_C57BL6NJ_T0007439.1 MGP_C57BL6NJ_G0006099.1 mouse_genomes_project 2 99046010 99050771 - lincRNA lincRNA MGP_C57BL6NJ_T0054066.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28213273 28271892 - MGP_C57BL6NJ_P0054066 Ntng2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054067.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28213526 28271866 - MGP_C57BL6NJ_P0054067 Ntng2 protein_coding protein_coding MGP_C57BL6NJ_T0054068.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28213553 28271807 - MGP_C57BL6NJ_P0054068 Ntng2 protein_coding protein_coding MGP_C57BL6NJ_T0054069.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28213553 28271807 - MGP_C57BL6NJ_P0054069 Ntng2 protein_coding protein_coding MGP_C57BL6NJ_T0054070.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28213553 28271807 - MGP_C57BL6NJ_P0054070 Ntng2 protein_coding protein_coding MGP_C57BL6NJ_T0054071.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28217200 28222734 - Ntng2 protein_coding processed_transcript MGP_C57BL6NJ_T0054072.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28217373 28223632 - Ntng2 protein_coding processed_transcript MGP_C57BL6NJ_T0054073.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28219271 28222734 - Ntng2 protein_coding processed_transcript MGP_C57BL6NJ_T0054074.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28219385 28223632 - Ntng2 protein_coding processed_transcript MGP_C57BL6NJ_T0054075.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28222531 28276772 - MGP_C57BL6NJ_P0054075 Ntng2 protein_coding protein_coding MGP_C57BL6NJ_T0054076.1 MGP_C57BL6NJ_G0025955.1 mouse_genomes_project 2 28254887 28271899 - Ntng2 protein_coding processed_transcript MGP_C57BL6NJ_T0103057.1 MGP_C57BL6NJ_G0040851.1 mouse_genomes_project 2 147337402 147337631 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059449.1 MGP_C57BL6NJ_G0027236.1 mouse_genomes_project 2 173159179 173162861 + Srsf6 protein_coding retained_intron MGP_C57BL6NJ_T0059450.1 MGP_C57BL6NJ_G0027236.1 mouse_genomes_project 2 173159179 173164774 + MGP_C57BL6NJ_P0059450 Srsf6 protein_coding protein_coding MGP_C57BL6NJ_T0059451.1 MGP_C57BL6NJ_G0027236.1 mouse_genomes_project 2 173159213 173162679 + MGP_C57BL6NJ_P0059451 Srsf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059452.1 MGP_C57BL6NJ_G0027236.1 mouse_genomes_project 2 173159312 173161161 + MGP_C57BL6NJ_P0059452 Srsf6 protein_coding protein_coding MGP_C57BL6NJ_T0059338.1 MGP_C57BL6NJ_G0027213.1 mouse_genomes_project 2 168028969 168058899 - MGP_C57BL6NJ_P0059338 Tgm2 protein_coding protein_coding MGP_C57BL6NJ_T0059339.1 MGP_C57BL6NJ_G0027213.1 mouse_genomes_project 2 168039814 168058856 - MGP_C57BL6NJ_P0059339 Tgm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059340.1 MGP_C57BL6NJ_G0027213.1 mouse_genomes_project 2 168042849 168058829 - Tgm2 protein_coding retained_intron MGP_C57BL6NJ_T0059341.1 MGP_C57BL6NJ_G0027213.1 mouse_genomes_project 2 168046791 168052199 - Tgm2 protein_coding processed_transcript MGP_C57BL6NJ_T0056228.1 MGP_C57BL6NJ_G0026404.1 mouse_genomes_project 2 90817095 90819168 - MGP_C57BL6NJ_P0056228 protein_coding protein_coding MGP_C57BL6NJ_T0054317.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30022667 30033816 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054318.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023199 30029606 - MGP_C57BL6NJ_P0054318 1700001O22Rik protein_coding protein_coding MGP_C57BL6NJ_T0054319.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023366 30024563 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054320.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023461 30033842 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054321.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023464 30033825 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054322.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023471 30028900 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054323.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023478 30033838 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054324.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023502 30033824 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054325.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023555 30033825 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054326.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30023572 30024774 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054327.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30024006 30033825 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054328.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30024080 30033825 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0054329.1 MGP_C57BL6NJ_G0025991.1 mouse_genomes_project 2 30025151 30033804 - 1700001O22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0056333.1 MGP_C57BL6NJ_G0026496.1 mouse_genomes_project 2 93287241 93288177 - MGP_C57BL6NJ_P0056333 protein_coding protein_coding MGP_C57BL6NJ_T0013857.1 MGP_C57BL6NJ_G0011902.1 mouse_genomes_project 2 51649947 51652223 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055562.1 MGP_C57BL6NJ_G0026215.1 mouse_genomes_project 2 71242802 71262474 + G6pc2 protein_coding processed_transcript MGP_C57BL6NJ_T0055563.1 MGP_C57BL6NJ_G0026215.1 mouse_genomes_project 2 71255760 71263631 + MGP_C57BL6NJ_P0055563 G6pc2 protein_coding protein_coding MGP_C57BL6NJ_T0055564.1 MGP_C57BL6NJ_G0026215.1 mouse_genomes_project 2 71255787 71263631 + MGP_C57BL6NJ_P0055564 G6pc2 protein_coding protein_coding MGP_C57BL6NJ_T0055565.1 MGP_C57BL6NJ_G0026215.1 mouse_genomes_project 2 71255817 71262626 + G6pc2 protein_coding processed_transcript MGP_C57BL6NJ_T0011769.1 MGP_C57BL6NJ_G0009854.1 mouse_genomes_project 2 110804201 110804323 - Gm27636 misc_RNA misc_RNA MGP_C57BL6NJ_T0056328.1 MGP_C57BL6NJ_G0026491.1 mouse_genomes_project 2 93205782 93206709 - MGP_C57BL6NJ_P0056328 Olfr1208 protein_coding protein_coding MGP_C57BL6NJ_T0059330.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923005 167973439 + MGP_C57BL6NJ_P0059330 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0059331.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923016 167943219 + Rprd1b protein_coding retained_intron MGP_C57BL6NJ_T0059332.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923200 167973439 + Rprd1b protein_coding processed_transcript MGP_C57BL6NJ_T0059333.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923209 167973439 + MGP_C57BL6NJ_P0059333 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0059334.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923229 167973439 + MGP_C57BL6NJ_P0059334 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0059335.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167923307 168044767 + MGP_C57BL6NJ_P0059335 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0059336.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167937931 167970299 + MGP_C57BL6NJ_P0059336 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0059337.1 MGP_C57BL6NJ_G0027212.1 mouse_genomes_project 2 167942467 167965742 + MGP_C57BL6NJ_P0059337 Rprd1b protein_coding protein_coding MGP_C57BL6NJ_T0013973.1 MGP_C57BL6NJ_G0012018.1 mouse_genomes_project 2 91290338 91290570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060081.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191285927 191776407 + MGP_C57BL6NJ_P0060081 Cdh4 protein_coding protein_coding MGP_C57BL6NJ_T0060082.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191286118 191723122 + MGP_C57BL6NJ_P0060082 Cdh4 protein_coding protein_coding MGP_C57BL6NJ_T0060083.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191287729 191645748 + Cdh4 protein_coding processed_transcript MGP_C57BL6NJ_T0060084.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191640289 191668318 + Cdh4 protein_coding processed_transcript MGP_C57BL6NJ_T0060085.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191770915 191773181 + Cdh4 protein_coding retained_intron MGP_C57BL6NJ_T0060086.1 MGP_C57BL6NJ_G0027401.1 mouse_genomes_project 2 191770940 191771725 + MGP_C57BL6NJ_P0060086 Cdh4 protein_coding protein_coding MGP_C57BL6NJ_T0053285.1 MGP_C57BL6NJ_G0025809.1 mouse_genomes_project 2 21103521 21169841 + Apbb1ip protein_coding processed_transcript MGP_C57BL6NJ_T0053286.1 MGP_C57BL6NJ_G0025809.1 mouse_genomes_project 2 21103795 21208603 + MGP_C57BL6NJ_P0053286 Apbb1ip protein_coding protein_coding MGP_C57BL6NJ_T0053287.1 MGP_C57BL6NJ_G0025809.1 mouse_genomes_project 2 21103817 21186081 + Apbb1ip protein_coding processed_transcript MGP_C57BL6NJ_T0053288.1 MGP_C57BL6NJ_G0025809.1 mouse_genomes_project 2 21103872 21162276 + Apbb1ip protein_coding retained_intron MGP_C57BL6NJ_T0013739.1 MGP_C57BL6NJ_G0011784.1 mouse_genomes_project 2 6064785 6065332 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007605.1 MGP_C57BL6NJ_G0006238.1 mouse_genomes_project 2 192796057 192813225 + Gm14344 lincRNA lincRNA MGP_C57BL6NJ_T0010565.1 MGP_C57BL6NJ_G0008650.1 mouse_genomes_project 2 8035691 8035812 + Mir669d miRNA miRNA MGP_C57BL6NJ_T0053974.1 MGP_C57BL6NJ_G0025934.1 mouse_genomes_project 2 26784872 26949071 + MGP_C57BL6NJ_P0053974 Col5a1 protein_coding protein_coding MGP_C57BL6NJ_T0053975.1 MGP_C57BL6NJ_G0025934.1 mouse_genomes_project 2 26925023 26944594 + MGP_C57BL6NJ_P0053975 Col5a1 protein_coding protein_coding MGP_C57BL6NJ_T0054977.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37217934 37393735 - MGP_C57BL6NJ_P0054977 Strbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054983.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37305823 37393801 - MGP_C57BL6NJ_P0054983 Strbp protein_coding protein_coding MGP_C57BL6NJ_T0054984.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37305976 37333082 - Strbp protein_coding processed_transcript MGP_C57BL6NJ_T0054985.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37318555 37325537 - MGP_C57BL6NJ_P0054985 Strbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054986.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37322173 37453332 - MGP_C57BL6NJ_P0054986 Strbp protein_coding protein_coding MGP_C57BL6NJ_T0054987.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37380812 37453405 - Strbp protein_coding processed_transcript MGP_C57BL6NJ_T0054988.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37381341 37405098 - MGP_C57BL6NJ_P0054988 Strbp protein_coding protein_coding MGP_C57BL6NJ_T0054989.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37387675 37453916 - MGP_C57BL6NJ_P0054989 Strbp protein_coding protein_coding MGP_C57BL6NJ_T0054990.1 MGP_C57BL6NJ_G0026115.1 mouse_genomes_project 2 37393635 37453206 - Strbp protein_coding processed_transcript MGP_C57BL6NJ_T0056586.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96245972 96252086 - MGP_C57BL6NJ_P0056586 Zfp408 protein_coding protein_coding MGP_C57BL6NJ_T0056587.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96245991 96252098 - MGP_C57BL6NJ_P0056587 Zfp408 protein_coding protein_coding MGP_C57BL6NJ_T0056588.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96248581 96250539 - Zfp408 protein_coding retained_intron MGP_C57BL6NJ_T0056589.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96249971 96252066 - MGP_C57BL6NJ_P0056589 Zfp408 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056590.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96250319 96252050 - Zfp408 protein_coding processed_transcript MGP_C57BL6NJ_T0056591.1 MGP_C57BL6NJ_G0026574.1 mouse_genomes_project 2 96251242 96252067 - Zfp408 protein_coding processed_transcript MGP_C57BL6NJ_T0058431.1 MGP_C57BL6NJ_G0026993.1 mouse_genomes_project 2 148946915 148968647 - Flrt3 protein_coding processed_transcript MGP_C57BL6NJ_T0058432.1 MGP_C57BL6NJ_G0026993.1 mouse_genomes_project 2 148954199 148968666 - MGP_C57BL6NJ_P0058432 Flrt3 protein_coding protein_coding MGP_C57BL6NJ_T0058433.1 MGP_C57BL6NJ_G0026993.1 mouse_genomes_project 2 148956532 148968597 - MGP_C57BL6NJ_P0058433 Flrt3 protein_coding protein_coding MGP_C57BL6NJ_T0052850.1 MGP_C57BL6NJ_G0025736.1 mouse_genomes_project 2 2262599 2371311 + MGP_C57BL6NJ_P0052850 Ccdc3 protein_coding protein_coding MGP_C57BL6NJ_T0054700.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32424695 32435086 - Slc2a8 protein_coding retained_intron MGP_C57BL6NJ_T0054701.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32424695 32435100 - MGP_C57BL6NJ_P0054701 Slc2a8 protein_coding protein_coding MGP_C57BL6NJ_T0054702.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32425290 32435035 - MGP_C57BL6NJ_P0054702 Slc2a8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054703.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32425290 32435035 - MGP_C57BL6NJ_P0054703 Slc2a8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054704.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32425290 32435035 - MGP_C57BL6NJ_P0054704 Slc2a8 protein_coding protein_coding MGP_C57BL6NJ_T0054705.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32427632 32435089 - MGP_C57BL6NJ_P0054705 Slc2a8 protein_coding protein_coding MGP_C57BL6NJ_T0054706.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32428616 32435037 - Slc2a8 protein_coding retained_intron MGP_C57BL6NJ_T0054707.1 MGP_C57BL6NJ_G0026047.1 mouse_genomes_project 2 32434503 32435101 - Slc2a8 protein_coding processed_transcript MGP_C57BL6NJ_T0055851.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78281439 78293703 + MGP_C57BL6NJ_P0055851 Hnrnpa3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0055852.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78281494 78293617 + MGP_C57BL6NJ_P0055852 Hnrnpa3 protein_coding protein_coding MGP_C57BL6NJ_T0055853.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78281507 78284296 + Hnrnpa3 protein_coding retained_intron MGP_C57BL6NJ_T0055854.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78281545 78289496 + MGP_C57BL6NJ_P0055854 Hnrnpa3 protein_coding protein_coding MGP_C57BL6NJ_T0055855.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78281545 78289496 + MGP_C57BL6NJ_P0055855 Hnrnpa3 protein_coding protein_coding MGP_C57BL6NJ_T0055856.1 MGP_C57BL6NJ_G0026275.1 mouse_genomes_project 2 78284751 78289664 + MGP_C57BL6NJ_P0055856 Hnrnpa3 protein_coding protein_coding MGP_C57BL6NJ_T0056389.1 MGP_C57BL6NJ_G0026536.1 mouse_genomes_project 2 94329394 94335208 + MGP_C57BL6NJ_P0056389 Olfr1260 protein_coding protein_coding MGP_C57BL6NJ_T0056390.1 MGP_C57BL6NJ_G0026536.1 mouse_genomes_project 2 94329401 94334688 + Olfr1260 protein_coding processed_transcript MGP_C57BL6NJ_T0056391.1 MGP_C57BL6NJ_G0026536.1 mouse_genomes_project 2 94329404 94334638 + MGP_C57BL6NJ_P0056391 Olfr1260 protein_coding protein_coding MGP_C57BL6NJ_T0056392.1 MGP_C57BL6NJ_G0026536.1 mouse_genomes_project 2 94329410 94334695 + Olfr1260 protein_coding processed_transcript MGP_C57BL6NJ_T0056393.1 MGP_C57BL6NJ_G0026536.1 mouse_genomes_project 2 94334275 94335208 + MGP_C57BL6NJ_P0056393 Olfr1260 protein_coding protein_coding MGP_C57BL6NJ_T0056893.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109293374 109336246 - MGP_C57BL6NJ_P0056893 Caprin1 protein_coding protein_coding MGP_C57BL6NJ_T0056894.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109295451 109335701 - MGP_C57BL6NJ_P0056894 Caprin1 protein_coding protein_coding MGP_C57BL6NJ_T0056895.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109299491 109305166 - MGP_C57BL6NJ_P0056895 Caprin1 protein_coding protein_coding MGP_C57BL6NJ_T0056896.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109300196 109304178 - MGP_C57BL6NJ_P0056896 Caprin1 protein_coding protein_coding MGP_C57BL6NJ_T0056897.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109300834 109305069 - Caprin1 protein_coding retained_intron MGP_C57BL6NJ_T0056898.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109304095 109306657 - Caprin1 protein_coding retained_intron MGP_C57BL6NJ_T0056899.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109305133 109306097 - Caprin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056900.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109305382 109311753 - MGP_C57BL6NJ_P0056900 Caprin1 protein_coding protein_coding MGP_C57BL6NJ_T0056901.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109305385 109308393 - Caprin1 protein_coding retained_intron MGP_C57BL6NJ_T0056902.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109305855 109308039 - Caprin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056903.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109310347 109335530 - Caprin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056904.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109311908 109335141 - Caprin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056905.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109318097 109335570 - Caprin1 protein_coding retained_intron MGP_C57BL6NJ_T0056906.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109318495 109335465 - Caprin1 protein_coding processed_transcript MGP_C57BL6NJ_T0056907.1 MGP_C57BL6NJ_G0026628.1 mouse_genomes_project 2 109335048 109336196 - Caprin1 protein_coding retained_intron MGP_C57BL6NJ_T0057973.1 MGP_C57BL6NJ_G0026889.1 mouse_genomes_project 2 135196821 135197922 - MGP_C57BL6NJ_P0057973 1500011K16Rik protein_coding protein_coding MGP_C57BL6NJ_T0057240.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125228578 125251081 - MGP_C57BL6NJ_P0057240 Bmf protein_coding protein_coding MGP_C57BL6NJ_T0057241.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125230053 125248953 - MGP_C57BL6NJ_P0057241 Bmf protein_coding protein_coding MGP_C57BL6NJ_T0057242.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125231794 125245982 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0057243.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125231875 125246710 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0057244.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125232242 125251056 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0057245.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125246577 125248421 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0057246.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125246629 125248993 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0057247.1 MGP_C57BL6NJ_G0026737.1 mouse_genomes_project 2 125248302 125251069 - Bmf protein_coding processed_transcript MGP_C57BL6NJ_T0058041.1 MGP_C57BL6NJ_G0026908.1 mouse_genomes_project 2 136833121 136843324 - MGP_C57BL6NJ_P0058041 Il1a protein_coding protein_coding MGP_C57BL6NJ_T0058755.1 MGP_C57BL6NJ_G0027086.1 mouse_genomes_project 2 161607861 161610733 + MGP_C57BL6NJ_P0058755 Defb20 protein_coding protein_coding MGP_C57BL6NJ_T0013757.1 MGP_C57BL6NJ_G0011802.1 mouse_genomes_project 2 13237187 13238157 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099073.1 MGP_C57BL6NJ_G0037137.1 mouse_genomes_project 2 84602371 84602479 - Gm23900 rRNA rRNA MGP_C57BL6NJ_T0014048.1 MGP_C57BL6NJ_G0012093.1 mouse_genomes_project 2 117646391 117724754 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011752.1 MGP_C57BL6NJ_G0009837.1 mouse_genomes_project 2 22250967 22251142 + Gm26323 misc_RNA misc_RNA MGP_C57BL6NJ_T0013952.1 MGP_C57BL6NJ_G0011997.1 mouse_genomes_project 2 85664539 85665068 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056404.1 MGP_C57BL6NJ_G0026546.1 mouse_genomes_project 2 94667865 94700014 - MGP_C57BL6NJ_P0056404 Olfr1272 protein_coding protein_coding MGP_C57BL6NJ_T0007420.1 MGP_C57BL6NJ_G0006085.1 mouse_genomes_project 2 81022697 81091188 + Gm14461 lincRNA lincRNA MGP_C57BL6NJ_T0007421.1 MGP_C57BL6NJ_G0006085.1 mouse_genomes_project 2 81090649 81090958 + Gm14461 lincRNA lincRNA MGP_C57BL6NJ_T0053248.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19174800 19299408 - MGP_C57BL6NJ_P0053248 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053249.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19174800 19300616 - MGP_C57BL6NJ_P0053249 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053250.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19174821 19299407 - MGP_C57BL6NJ_P0053250 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053251.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19175475 19300213 - MGP_C57BL6NJ_P0053251 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053252.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19176833 19180129 - Arhgap21 protein_coding retained_intron MGP_C57BL6NJ_T0053253.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19176924 19209567 - MGP_C57BL6NJ_P0053253 Arhgap21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053254.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19177125 19186770 - Arhgap21 protein_coding retained_intron MGP_C57BL6NJ_T0053255.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19177261 19181513 - Arhgap21 protein_coding retained_intron MGP_C57BL6NJ_T0053256.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19179922 19182587 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0053257.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19179923 19186763 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0053258.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19185796 19198016 - MGP_C57BL6NJ_P0053258 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053259.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19186310 19187984 - Arhgap21 protein_coding retained_intron MGP_C57BL6NJ_T0053260.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19212695 19241909 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0053261.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19216237 19273800 - MGP_C57BL6NJ_P0053261 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053262.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19242014 19300312 - MGP_C57BL6NJ_P0053262 Arhgap21 protein_coding protein_coding MGP_C57BL6NJ_T0053263.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19299284 19300171 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0053264.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19299309 19300519 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0053265.1 MGP_C57BL6NJ_G0025802.1 mouse_genomes_project 2 19299376 19300615 - Arhgap21 protein_coding processed_transcript MGP_C57BL6NJ_T0102462.1 MGP_C57BL6NJ_G0040351.1 mouse_genomes_project 2 90742402 90743350 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0054812.1 MGP_C57BL6NJ_G0026063.1 mouse_genomes_project 2 34478986 34501311 - MGP_C57BL6NJ_P0054812 Phf19 protein_coding protein_coding MGP_C57BL6NJ_T0054813.1 MGP_C57BL6NJ_G0026063.1 mouse_genomes_project 2 34479013 34489382 - Phf19 protein_coding processed_transcript MGP_C57BL6NJ_T0054814.1 MGP_C57BL6NJ_G0026063.1 mouse_genomes_project 2 34483311 34490137 - Phf19 protein_coding processed_transcript MGP_C57BL6NJ_T0054815.1 MGP_C57BL6NJ_G0026063.1 mouse_genomes_project 2 34484198 34501361 - Phf19 protein_coding retained_intron MGP_C57BL6NJ_T0054816.1 MGP_C57BL6NJ_G0026063.1 mouse_genomes_project 2 34494436 34501352 - MGP_C57BL6NJ_P0054816 Phf19 protein_coding protein_coding MGP_C57BL6NJ_T0059630.1 MGP_C57BL6NJ_G0027299.1 mouse_genomes_project 2 175258068 175262254 + MGP_C57BL6NJ_P0059630 Zswim1 protein_coding protein_coding MGP_C57BL6NJ_T0059631.1 MGP_C57BL6NJ_G0027299.1 mouse_genomes_project 2 175258395 175260651 + MGP_C57BL6NJ_P0059631 Zswim1 protein_coding protein_coding MGP_C57BL6NJ_T0056277.1 MGP_C57BL6NJ_G0026444.1 mouse_genomes_project 2 91748861 91749797 + MGP_C57BL6NJ_P0056277 Olfr1140 protein_coding protein_coding MGP_C57BL6NJ_T0010606.1 MGP_C57BL6NJ_G0008691.1 mouse_genomes_project 2 16103322 16103380 + Mir7655 miRNA miRNA MGP_C57BL6NJ_T0007432.1 MGP_C57BL6NJ_G0006096.1 mouse_genomes_project 2 97189375 97201900 - Gm13817 lincRNA lincRNA MGP_C57BL6NJ_T0001152.1 MGP_C57BL6NJ_G0001058.1 mouse_genomes_project 2 3756803 3760199 + TEC TEC MGP_C57BL6NJ_T0004227.1 MGP_C57BL6NJ_G0003742.1 mouse_genomes_project 2 136227054 136229489 - Gm14011 antisense antisense MGP_C57BL6NJ_T0101471.1 MGP_C57BL6NJ_G0039517.1 mouse_genomes_project 2 25719263 25719337 + Gm23969 snoRNA snoRNA MGP_C57BL6NJ_T0014001.1 MGP_C57BL6NJ_G0012046.1 mouse_genomes_project 2 100552923 100553043 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055247.1 MGP_C57BL6NJ_G0026158.1 mouse_genomes_project 2 55447758 56200475 + MGP_C57BL6NJ_P0055247 Galnt13 protein_coding protein_coding MGP_C57BL6NJ_T0055248.1 MGP_C57BL6NJ_G0026158.1 mouse_genomes_project 2 55447828 56200475 + MGP_C57BL6NJ_P0055248 Galnt13 protein_coding protein_coding MGP_C57BL6NJ_T0055249.1 MGP_C57BL6NJ_G0026158.1 mouse_genomes_project 2 55447828 56200475 + MGP_C57BL6NJ_P0055249 Galnt13 protein_coding protein_coding MGP_C57BL6NJ_T0055250.1 MGP_C57BL6NJ_G0026158.1 mouse_genomes_project 2 55447932 55755049 + MGP_C57BL6NJ_P0055250 Galnt13 protein_coding protein_coding MGP_C57BL6NJ_T0055251.1 MGP_C57BL6NJ_G0026158.1 mouse_genomes_project 2 55538734 56195073 + MGP_C57BL6NJ_P0055251 Galnt13 protein_coding protein_coding MGP_C57BL6NJ_T0055981.1 MGP_C57BL6NJ_G0026298.1 mouse_genomes_project 2 82557775 82596487 + MGP_C57BL6NJ_P0055981 Ssfa2 protein_coding protein_coding MGP_C57BL6NJ_T0055982.1 MGP_C57BL6NJ_G0026298.1 mouse_genomes_project 2 82557849 82596487 + MGP_C57BL6NJ_P0055982 Ssfa2 protein_coding protein_coding MGP_C57BL6NJ_T0055983.1 MGP_C57BL6NJ_G0026298.1 mouse_genomes_project 2 82557878 82596487 + MGP_C57BL6NJ_P0055983 Ssfa2 protein_coding protein_coding MGP_C57BL6NJ_T0055984.1 MGP_C57BL6NJ_G0026298.1 mouse_genomes_project 2 82557884 82558858 + Ssfa2 protein_coding processed_transcript MGP_C57BL6NJ_T0055985.1 MGP_C57BL6NJ_G0026298.1 mouse_genomes_project 2 82561604 82596487 + Ssfa2 protein_coding processed_transcript MGP_C57BL6NJ_T0013822.1 MGP_C57BL6NJ_G0011867.1 mouse_genomes_project 2 37406332 37406708 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053411.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533634 23544448 + MGP_C57BL6NJ_P0053411 Dph7 protein_coding protein_coding MGP_C57BL6NJ_T0053412.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533656 23544446 + MGP_C57BL6NJ_P0053412 Dph7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053413.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533657 23541203 + MGP_C57BL6NJ_P0053413 Dph7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053414.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533658 23544432 + MGP_C57BL6NJ_P0053414 Dph7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053415.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533675 23537983 + MGP_C57BL6NJ_P0053415 Dph7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053416.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533686 23537938 + MGP_C57BL6NJ_P0053416 Dph7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053417.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533700 23544448 + Dph7 protein_coding retained_intron MGP_C57BL6NJ_T0053418.1 MGP_C57BL6NJ_G0025832.1 mouse_genomes_project 2 23533707 23541956 + MGP_C57BL6NJ_P0053418 Dph7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057036.1 MGP_C57BL6NJ_G0026659.1 mouse_genomes_project 2 115033053 115247775 - MGP_C57BL6NJ_P0057036 Mettl15 protein_coding protein_coding MGP_C57BL6NJ_T0057037.1 MGP_C57BL6NJ_G0026659.1 mouse_genomes_project 2 115033056 115247765 - Mettl15 protein_coding processed_transcript MGP_C57BL6NJ_T0057038.1 MGP_C57BL6NJ_G0026659.1 mouse_genomes_project 2 115076635 115250233 - MGP_C57BL6NJ_P0057038 Mettl15 protein_coding protein_coding MGP_C57BL6NJ_T0057039.1 MGP_C57BL6NJ_G0026659.1 mouse_genomes_project 2 115206934 115250211 - Mettl15 protein_coding retained_intron MGP_C57BL6NJ_T0057040.1 MGP_C57BL6NJ_G0026659.1 mouse_genomes_project 2 115206999 115250187 - Mettl15 protein_coding processed_transcript MGP_C57BL6NJ_T0004270.1 MGP_C57BL6NJ_G0003770.1 mouse_genomes_project 2 155882404 155883388 + 6430503K07Rik antisense antisense MGP_C57BL6NJ_T0052746.1 MGP_C57BL6NJ_G0025718.1 mouse_genomes_project 2 235511 278735 + MGP_C57BL6NJ_P0052746 Nmt2 protein_coding protein_coding MGP_C57BL6NJ_T0052747.1 MGP_C57BL6NJ_G0025718.1 mouse_genomes_project 2 235535 259127 + Nmt2 protein_coding processed_transcript MGP_C57BL6NJ_T0052748.1 MGP_C57BL6NJ_G0025718.1 mouse_genomes_project 2 235551 280896 + MGP_C57BL6NJ_P0052748 Nmt2 protein_coding protein_coding MGP_C57BL6NJ_T0056225.1 MGP_C57BL6NJ_G0026401.1 mouse_genomes_project 2 90678470 90679380 - MGP_C57BL6NJ_P0056225 Olfr141 protein_coding protein_coding MGP_C57BL6NJ_T0013892.1 MGP_C57BL6NJ_G0011937.1 mouse_genomes_project 2 61978920 61979167 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013880.1 MGP_C57BL6NJ_G0011925.1 mouse_genomes_project 2 60047735 60048598 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010590.1 MGP_C57BL6NJ_G0008675.1 mouse_genomes_project 2 8067855 8067952 + Gm26092 miRNA miRNA MGP_C57BL6NJ_T0059629.1 MGP_C57BL6NJ_G0027298.1 mouse_genomes_project 2 175238512 175257513 + MGP_C57BL6NJ_P0059629 Zswim3 protein_coding protein_coding MGP_C57BL6NJ_T0055101.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45367129 45507531 - MGP_C57BL6NJ_P0055101 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055102.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45370618 45500962 - MGP_C57BL6NJ_P0055102 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055103.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45370620 45496886 - MGP_C57BL6NJ_P0055103 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055104.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45370620 45501256 - MGP_C57BL6NJ_P0055104 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055105.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45371831 45500979 - MGP_C57BL6NJ_P0055105 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055106.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45371898 45496659 - MGP_C57BL6NJ_P0055106 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055107.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45371939 45500867 - MGP_C57BL6NJ_P0055107 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055108.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45380337 45496823 - MGP_C57BL6NJ_P0055108 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055109.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45385224 45497543 - MGP_C57BL6NJ_P0055109 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055110.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45385249 45407035 - MGP_C57BL6NJ_P0055110 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055111.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45385315 45496615 - MGP_C57BL6NJ_P0055111 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055112.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45386214 45439493 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055113.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45386216 45497525 - MGP_C57BL6NJ_P0055113 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055114.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45392695 45497445 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055115.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45401556 45501245 - MGP_C57BL6NJ_P0055115 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055116.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45404957 45501066 - Zeb2 protein_coding retained_intron MGP_C57BL6NJ_T0055117.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45405032 45501222 - Zeb2 protein_coding retained_intron MGP_C57BL6NJ_T0055118.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45407023 45496998 - MGP_C57BL6NJ_P0055118 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055119.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45407108 45501261 - MGP_C57BL6NJ_P0055119 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055120.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45407179 45497125 - MGP_C57BL6NJ_P0055120 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055121.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45481948 45497104 - MGP_C57BL6NJ_P0055121 Zeb2 protein_coding protein_coding MGP_C57BL6NJ_T0055122.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45490399 45501225 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055123.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45490399 45496858 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055124.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45490399 45501193 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055125.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45491626 45496447 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055126.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45492487 45496855 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0055127.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45492846 45500978 - Zeb2 protein_coding retained_intron MGP_C57BL6NJ_T0055128.1 MGP_C57BL6NJ_G0026135.1 mouse_genomes_project 2 45496459 45501504 - Zeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0054451.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31294801 31315446 + MGP_C57BL6NJ_P0054451 Aif1l protein_coding protein_coding MGP_C57BL6NJ_T0054452.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31294852 31315688 + MGP_C57BL6NJ_P0054452 Aif1l protein_coding protein_coding MGP_C57BL6NJ_T0054453.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31294981 31314196 + Aif1l protein_coding retained_intron MGP_C57BL6NJ_T0054454.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31295035 31315794 + Aif1l protein_coding retained_intron MGP_C57BL6NJ_T0054455.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31304866 31315480 + Aif1l protein_coding processed_transcript MGP_C57BL6NJ_T0054456.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31305847 31314192 + Aif1l protein_coding processed_transcript MGP_C57BL6NJ_T0054457.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31306437 31315404 + Aif1l protein_coding retained_intron MGP_C57BL6NJ_T0054458.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31307787 31315451 + Aif1l protein_coding processed_transcript MGP_C57BL6NJ_T0054459.1 MGP_C57BL6NJ_G0026012.1 mouse_genomes_project 2 31313765 31315611 + Aif1l protein_coding retained_intron MGP_C57BL6NJ_T0007449.1 MGP_C57BL6NJ_G0006107.1 mouse_genomes_project 2 108715780 108719929 - Gm13869 lincRNA lincRNA MGP_C57BL6NJ_T0059894.1 MGP_C57BL6NJ_G0027349.1 mouse_genomes_project 2 179176547 179197431 - MGP_C57BL6NJ_P0059894 Kcng1 protein_coding protein_coding MGP_C57BL6NJ_T0059895.1 MGP_C57BL6NJ_G0027349.1 mouse_genomes_project 2 179178128 179185749 - MGP_C57BL6NJ_P0059895 Kcng1 protein_coding protein_coding MGP_C57BL6NJ_T0059896.1 MGP_C57BL6NJ_G0027349.1 mouse_genomes_project 2 179185516 179199305 - MGP_C57BL6NJ_P0059896 Kcng1 protein_coding protein_coding MGP_C57BL6NJ_T0057732.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129370168 129374826 - MGP_C57BL6NJ_P0057732 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0057733.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129371526 129381685 - MGP_C57BL6NJ_P0057733 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0057734.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129371529 129373689 - Duoxa1 protein_coding processed_transcript MGP_C57BL6NJ_T0057735.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129371722 129374804 - MGP_C57BL6NJ_P0057735 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0057736.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129372746 129381722 - MGP_C57BL6NJ_P0057736 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0057737.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129373192 129381636 - MGP_C57BL6NJ_P0057737 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0057738.1 MGP_C57BL6NJ_G0026833.1 mouse_genomes_project 2 129373571 129381643 - MGP_C57BL6NJ_P0057738 Duoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0018354.1 MGP_C57BL6NJ_G0015874.1 mouse_genomes_project 2 166230143 166234349 - Gm14169 processed_transcript processed_transcript MGP_C57BL6NJ_T0004135.1 MGP_C57BL6NJ_G0003677.1 mouse_genomes_project 2 66536434 66536759 + antisense antisense MGP_C57BL6NJ_T0056205.1 MGP_C57BL6NJ_G0026383.1 mouse_genomes_project 2 89936208 89937159 - MGP_C57BL6NJ_P0056205 Olfr1046 protein_coding protein_coding MGP_C57BL6NJ_T0058410.1 MGP_C57BL6NJ_G0026989.1 mouse_genomes_project 2 148401622 148403972 + MGP_C57BL6NJ_P0058410 Gm17374 protein_coding protein_coding MGP_C57BL6NJ_T0053879.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727066 25728445 - Surf1 protein_coding retained_intron MGP_C57BL6NJ_T0053880.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727068 25730154 - MGP_C57BL6NJ_P0053880 Surf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053881.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727068 25730216 - MGP_C57BL6NJ_P0053881 Surf1 protein_coding protein_coding MGP_C57BL6NJ_T0053882.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727068 25729986 - MGP_C57BL6NJ_P0053882 Surf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053883.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727262 25730006 - MGP_C57BL6NJ_P0053883 Surf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053884.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727262 25730031 - MGP_C57BL6NJ_P0053884 Surf1 protein_coding protein_coding MGP_C57BL6NJ_T0053885.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25727916 25729997 - Surf1 protein_coding retained_intron MGP_C57BL6NJ_T0053886.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25728160 25729178 - Surf1 protein_coding retained_intron MGP_C57BL6NJ_T0053887.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25728543 25730018 - MGP_C57BL6NJ_P0053887 Surf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053888.1 MGP_C57BL6NJ_G0025917.1 mouse_genomes_project 2 25729142 25730031 - MGP_C57BL6NJ_P0053888 Surf1 protein_coding protein_coding MGP_C57BL6NJ_T0056354.1 MGP_C57BL6NJ_G0026513.1 mouse_genomes_project 2 93648258 93649176 - MGP_C57BL6NJ_P0056354 Olfr1233 protein_coding protein_coding MGP_C57BL6NJ_T0013980.1 MGP_C57BL6NJ_G0012025.1 mouse_genomes_project 2 91642297 91642754 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054597.1 MGP_C57BL6NJ_G0026031.1 mouse_genomes_project 2 32005074 32017678 + MGP_C57BL6NJ_P0054597 St6galnac4 protein_coding protein_coding MGP_C57BL6NJ_T0054598.1 MGP_C57BL6NJ_G0026031.1 mouse_genomes_project 2 32005118 32012255 + St6galnac4 protein_coding retained_intron MGP_C57BL6NJ_T0054599.1 MGP_C57BL6NJ_G0026031.1 mouse_genomes_project 2 32005560 32015681 + St6galnac4 protein_coding retained_intron MGP_C57BL6NJ_T0054600.1 MGP_C57BL6NJ_G0026031.1 mouse_genomes_project 2 32005604 32017055 + MGP_C57BL6NJ_P0054600 St6galnac4 protein_coding protein_coding MGP_C57BL6NJ_T0054601.1 MGP_C57BL6NJ_G0026031.1 mouse_genomes_project 2 32012255 32015169 + MGP_C57BL6NJ_P0054601 St6galnac4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001180.1 MGP_C57BL6NJ_G0001086.1 mouse_genomes_project 2 12501856 12503265 + TEC TEC MGP_C57BL6NJ_T0055633.1 MGP_C57BL6NJ_G0026230.1 mouse_genomes_project 2 72641811 72644612 + MGP_C57BL6NJ_P0055633 Sp5 protein_coding protein_coding MGP_C57BL6NJ_T0004049.1 MGP_C57BL6NJ_G0003612.1 mouse_genomes_project 2 9997135 10007452 + E030013I19Rik antisense antisense MGP_C57BL6NJ_T0004050.1 MGP_C57BL6NJ_G0003612.1 mouse_genomes_project 2 9997508 10008467 + E030013I19Rik antisense antisense MGP_C57BL6NJ_T0013989.1 MGP_C57BL6NJ_G0012034.1 mouse_genomes_project 2 96118355 96118660 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010628.1 MGP_C57BL6NJ_G0008713.1 mouse_genomes_project 2 31407436 31407499 + Mir7674 miRNA miRNA MGP_C57BL6NJ_T0007548.1 MGP_C57BL6NJ_G0006188.1 mouse_genomes_project 2 171311560 171352079 + Gm14243 lincRNA lincRNA MGP_C57BL6NJ_T0010645.1 MGP_C57BL6NJ_G0008730.1 mouse_genomes_project 2 53133523 53133673 + Gm22095 miRNA miRNA MGP_C57BL6NJ_T0014054.1 MGP_C57BL6NJ_G0012099.1 mouse_genomes_project 2 118361748 118362801 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056183.1 MGP_C57BL6NJ_G0026362.1 mouse_genomes_project 2 89394193 89395129 + MGP_C57BL6NJ_P0056183 Olfr1023 protein_coding protein_coding MGP_C57BL6NJ_T0054190.1 MGP_C57BL6NJ_G0025971.1 mouse_genomes_project 2 29204368 29206444 - Zdhhc12 protein_coding processed_transcript MGP_C57BL6NJ_T0054191.1 MGP_C57BL6NJ_G0025971.1 mouse_genomes_project 2 29204368 29207073 - MGP_C57BL6NJ_P0054191 Zdhhc12 protein_coding protein_coding MGP_C57BL6NJ_T0054192.1 MGP_C57BL6NJ_G0025971.1 mouse_genomes_project 2 29204375 29207060 - MGP_C57BL6NJ_P0054192 Zdhhc12 protein_coding protein_coding MGP_C57BL6NJ_T0054193.1 MGP_C57BL6NJ_G0025971.1 mouse_genomes_project 2 29204755 29207041 - Zdhhc12 protein_coding retained_intron MGP_C57BL6NJ_T0010618.1 MGP_C57BL6NJ_G0008703.1 mouse_genomes_project 2 26294122 26294204 - Mir7578 miRNA miRNA MGP_C57BL6NJ_T0054952.1 MGP_C57BL6NJ_G0026109.1 mouse_genomes_project 2 37068583 37069567 + MGP_C57BL6NJ_P0054952 Olfr368 protein_coding protein_coding MGP_C57BL6NJ_T0056107.1 MGP_C57BL6NJ_G0026326.1 mouse_genomes_project 2 88080132 88081619 - MGP_C57BL6NJ_P0056107 Gm19426 protein_coding protein_coding MGP_C57BL6NJ_T0010671.1 MGP_C57BL6NJ_G0008756.1 mouse_genomes_project 2 109383711 109383807 + Gm22757 miRNA miRNA MGP_C57BL6NJ_T0055324.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61175344 61206968 - MGP_C57BL6NJ_P0055324 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055325.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61178167 61206931 - MGP_C57BL6NJ_P0055325 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055326.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61184304 61185707 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0055327.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61184313 61184661 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0055328.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61184541 61201226 - MGP_C57BL6NJ_P0055328 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055329.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61184668 61186542 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0055330.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61185653 61206941 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0055331.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61194712 61202548 - MGP_C57BL6NJ_P0055331 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055332.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61197418 61202730 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0055333.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61201050 61206970 - MGP_C57BL6NJ_P0055333 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055334.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61201051 61206958 - MGP_C57BL6NJ_P0055334 Wdsub1 protein_coding protein_coding MGP_C57BL6NJ_T0055335.1 MGP_C57BL6NJ_G0026175.1 mouse_genomes_project 2 61202715 61206975 - Wdsub1 protein_coding processed_transcript MGP_C57BL6NJ_T0007463.1 MGP_C57BL6NJ_G0006120.1 mouse_genomes_project 2 121232097 121459901 + lincRNA lincRNA MGP_C57BL6NJ_T0058402.1 MGP_C57BL6NJ_G0026986.1 mouse_genomes_project 2 147886165 147970963 + MGP_C57BL6NJ_P0058402 Ism1 protein_coding protein_coding MGP_C57BL6NJ_T0058403.1 MGP_C57BL6NJ_G0026986.1 mouse_genomes_project 2 147886165 147970964 + MGP_C57BL6NJ_P0058403 Ism1 protein_coding protein_coding MGP_C57BL6NJ_T0060220.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070734 193130151 - MGP_C57BL6NJ_P0060220 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060221.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070735 193130359 - MGP_C57BL6NJ_P0060221 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060222.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070742 193130186 - MGP_C57BL6NJ_P0060222 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060223.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070744 193130236 - MGP_C57BL6NJ_P0060223 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060224.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070744 193130236 - MGP_C57BL6NJ_P0060224 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060225.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070744 193130236 - MGP_C57BL6NJ_P0060225 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060226.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193070744 193130236 - MGP_C57BL6NJ_P0060226 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060227.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193074737 193130320 - MGP_C57BL6NJ_P0060227 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060228.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193075655 193109832 - MGP_C57BL6NJ_P0060228 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060229.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193076055 193130190 - MGP_C57BL6NJ_P0060229 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060230.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193077559 193104905 - MGP_C57BL6NJ_P0060230 Kcnq2 protein_coding protein_coding MGP_C57BL6NJ_T0060231.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193077609 193090578 - Kcnq2 protein_coding processed_transcript MGP_C57BL6NJ_T0060232.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193079738 193095955 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060233.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193081134 193130236 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060234.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193091397 193130236 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060235.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193091622 193130236 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060236.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193103592 193130236 - Kcnq2 protein_coding processed_transcript MGP_C57BL6NJ_T0060237.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193103592 193130302 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060238.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193103592 193130236 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0060239.1 MGP_C57BL6NJ_G0027431.1 mouse_genomes_project 2 193103592 193130236 - Kcnq2 protein_coding retained_intron MGP_C57BL6NJ_T0010602.1 MGP_C57BL6NJ_G0008687.1 mouse_genomes_project 2 8074068 8074193 + Mir669h miRNA miRNA MGP_C57BL6NJ_T0054949.1 MGP_C57BL6NJ_G0026106.1 mouse_genomes_project 2 36921009 36921948 + MGP_C57BL6NJ_P0054949 Olfr365 protein_coding protein_coding MGP_C57BL6NJ_T0056162.1 MGP_C57BL6NJ_G0026342.1 mouse_genomes_project 2 88843586 88844531 - MGP_C57BL6NJ_P0056162 Olfr993 protein_coding protein_coding MGP_C57BL6NJ_T0001193.1 MGP_C57BL6NJ_G0001099.1 mouse_genomes_project 2 32451468 32455211 - TEC TEC MGP_C57BL6NJ_T0058981.1 MGP_C57BL6NJ_G0027156.1 mouse_genomes_project 2 164779186 164802040 - Pigu protein_coding processed_transcript MGP_C57BL6NJ_T0058982.1 MGP_C57BL6NJ_G0027156.1 mouse_genomes_project 2 164779186 164863131 - MGP_C57BL6NJ_P0058982 Pigu protein_coding protein_coding MGP_C57BL6NJ_T0058983.1 MGP_C57BL6NJ_G0027156.1 mouse_genomes_project 2 164779187 164863125 - MGP_C57BL6NJ_P0058983 Pigu protein_coding protein_coding MGP_C57BL6NJ_T0058984.1 MGP_C57BL6NJ_G0027156.1 mouse_genomes_project 2 164802003 164805416 - Pigu protein_coding processed_transcript MGP_C57BL6NJ_T0058985.1 MGP_C57BL6NJ_G0027156.1 mouse_genomes_project 2 164835299 164863120 - Pigu protein_coding retained_intron MGP_C57BL6NJ_T0058324.1 MGP_C57BL6NJ_G0026968.1 mouse_genomes_project 2 140592978 140622831 + MGP_C57BL6NJ_P0058324 Mcm8 protein_coding protein_coding MGP_C57BL6NJ_T0058325.1 MGP_C57BL6NJ_G0026968.1 mouse_genomes_project 2 140592978 140622529 + MGP_C57BL6NJ_P0058325 Mcm8 protein_coding protein_coding MGP_C57BL6NJ_T0058326.1 MGP_C57BL6NJ_G0026968.1 mouse_genomes_project 2 140593061 140594863 + Mcm8 protein_coding processed_transcript MGP_C57BL6NJ_T0007571.1 MGP_C57BL6NJ_G0006207.1 mouse_genomes_project 2 178612791 178616191 + lincRNA lincRNA MGP_C57BL6NJ_T0001219.1 MGP_C57BL6NJ_G0001125.1 mouse_genomes_project 2 77961032 77961627 - TEC TEC MGP_C57BL6NJ_T0001162.1 MGP_C57BL6NJ_G0001068.1 mouse_genomes_project 2 9022374 9023495 - TEC TEC MGP_C57BL6NJ_T0004269.1 MGP_C57BL6NJ_G0003769.1 mouse_genomes_project 2 155879320 156040293 + antisense antisense MGP_C57BL6NJ_T0059539.1 MGP_C57BL6NJ_G0027262.1 mouse_genomes_project 2 174515656 174517034 - MGP_C57BL6NJ_P0059539 Wfdc12 protein_coding protein_coding MGP_C57BL6NJ_T0007596.1 MGP_C57BL6NJ_G0006229.1 mouse_genomes_project 2 183260763 183282776 - lincRNA lincRNA MGP_C57BL6NJ_T0013744.1 MGP_C57BL6NJ_G0011789.1 mouse_genomes_project 2 8537395 8538233 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054924.1 MGP_C57BL6NJ_G0026083.1 mouse_genomes_project 2 36090482 36091412 + MGP_C57BL6NJ_P0054924 Olfr339 protein_coding protein_coding MGP_C57BL6NJ_T0053713.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24614469 24677908 - MGP_C57BL6NJ_P0053713 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053714.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24614469 24677908 - MGP_C57BL6NJ_P0053714 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053715.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24616138 24658571 - MGP_C57BL6NJ_P0053715 Camsap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053716.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24617314 24677564 - MGP_C57BL6NJ_P0053716 Camsap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0053717.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24617314 24677908 - MGP_C57BL6NJ_P0053717 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053718.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24617520 24623150 - Camsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0053719.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24617531 24622203 - Camsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0053720.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24626895 24677687 - MGP_C57BL6NJ_P0053720 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053721.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24636123 24658700 - MGP_C57BL6NJ_P0053721 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053722.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24636142 24657601 - MGP_C57BL6NJ_P0053722 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053723.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24636316 24658608 - MGP_C57BL6NJ_P0053723 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0053724.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24648144 24677834 - MGP_C57BL6NJ_P0053724 Camsap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053725.1 MGP_C57BL6NJ_G0025892.1 mouse_genomes_project 2 24657594 24677682 - MGP_C57BL6NJ_P0053725 Camsap1 protein_coding protein_coding MGP_C57BL6NJ_T0013731.1 MGP_C57BL6NJ_G0011776.1 mouse_genomes_project 2 2041635 2041946 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001171.1 MGP_C57BL6NJ_G0001077.1 mouse_genomes_project 2 10781838 10785858 + TEC TEC MGP_C57BL6NJ_T0014009.1 MGP_C57BL6NJ_G0012054.1 mouse_genomes_project 2 104740308 104740936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056976.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110807728 110858700 + MGP_C57BL6NJ_P0056976 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056977.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110811893 110857430 + MGP_C57BL6NJ_P0056977 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056978.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110811898 110857353 + MGP_C57BL6NJ_P0056978 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056979.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110812107 110857769 + MGP_C57BL6NJ_P0056979 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056980.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110815697 110818848 + Wt1 protein_coding retained_intron MGP_C57BL6NJ_T0056981.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110815780 110858704 + MGP_C57BL6NJ_P0056981 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056982.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110815780 110858700 + MGP_C57BL6NJ_P0056982 Wt1 protein_coding protein_coding MGP_C57BL6NJ_T0056983.1 MGP_C57BL6NJ_G0026648.1 mouse_genomes_project 2 110847849 110855099 + Wt1 protein_coding retained_intron MGP_C57BL6NJ_T0007390.1 MGP_C57BL6NJ_G0006061.1 mouse_genomes_project 2 74043994 74055398 + Platr26 lincRNA lincRNA MGP_C57BL6NJ_T0056241.1 MGP_C57BL6NJ_G0026416.1 mouse_genomes_project 2 91051260 91052199 - MGP_C57BL6NJ_P0056241 Olfr1110 protein_coding protein_coding MGP_C57BL6NJ_T0011764.1 MGP_C57BL6NJ_G0009849.1 mouse_genomes_project 2 74691707 74692015 + Zakit misc_RNA misc_RNA MGP_C57BL6NJ_T0010691.1 MGP_C57BL6NJ_G0008776.1 mouse_genomes_project 2 138134698 138134765 - Gm23876 miRNA miRNA MGP_C57BL6NJ_T0055183.1 MGP_C57BL6NJ_G0026144.1 mouse_genomes_project 2 51887126 51905871 - MGP_C57BL6NJ_P0055183 Rnd3 protein_coding protein_coding MGP_C57BL6NJ_T0055184.1 MGP_C57BL6NJ_G0026144.1 mouse_genomes_project 2 51888523 51905870 - MGP_C57BL6NJ_P0055184 Rnd3 protein_coding protein_coding MGP_C57BL6NJ_T0055185.1 MGP_C57BL6NJ_G0026144.1 mouse_genomes_project 2 51893757 51905854 - Rnd3 protein_coding retained_intron MGP_C57BL6NJ_T0103045.1 MGP_C57BL6NJ_G0040839.1 mouse_genomes_project 2 94741394 94742324 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0056303.1 MGP_C57BL6NJ_G0026468.1 mouse_genomes_project 2 92498391 92499339 + MGP_C57BL6NJ_P0056303 Olfr1176 protein_coding protein_coding MGP_C57BL6NJ_T0010701.1 MGP_C57BL6NJ_G0008786.1 mouse_genomes_project 2 164862517 164862626 + Mir695 miRNA miRNA MGP_C57BL6NJ_T0053767.1 MGP_C57BL6NJ_G0025901.1 mouse_genomes_project 2 25084185 25091753 - MGP_C57BL6NJ_P0053767 Card9 protein_coding protein_coding MGP_C57BL6NJ_T0053768.1 MGP_C57BL6NJ_G0025901.1 mouse_genomes_project 2 25084196 25084781 - Card9 protein_coding processed_transcript MGP_C57BL6NJ_T0053769.1 MGP_C57BL6NJ_G0025901.1 mouse_genomes_project 2 25084196 25092924 - MGP_C57BL6NJ_P0053769 Card9 protein_coding protein_coding MGP_C57BL6NJ_T0059723.1 MGP_C57BL6NJ_G0027314.1 mouse_genomes_project 2 175845430 175868296 - MGP_C57BL6NJ_P0059723 Zfp663 protein_coding protein_coding MGP_C57BL6NJ_T0059724.1 MGP_C57BL6NJ_G0027314.1 mouse_genomes_project 2 175845431 175859738 - MGP_C57BL6NJ_P0059724 Zfp663 protein_coding protein_coding MGP_C57BL6NJ_T0059725.1 MGP_C57BL6NJ_G0027314.1 mouse_genomes_project 2 175847944 175859003 - Zfp663 protein_coding processed_transcript MGP_C57BL6NJ_T0059726.1 MGP_C57BL6NJ_G0027314.1 mouse_genomes_project 2 175848177 175868290 - MGP_C57BL6NJ_P0059726 Zfp663 protein_coding protein_coding MGP_C57BL6NJ_T0058440.1 MGP_C57BL6NJ_G0026995.1 mouse_genomes_project 2 151502927 151512737 + MGP_C57BL6NJ_P0058440 Snrpb2 protein_coding protein_coding MGP_C57BL6NJ_T0058441.1 MGP_C57BL6NJ_G0026995.1 mouse_genomes_project 2 151502949 151505623 + Snrpb2 protein_coding retained_intron MGP_C57BL6NJ_T0058442.1 MGP_C57BL6NJ_G0026995.1 mouse_genomes_project 2 151503019 151509308 + MGP_C57BL6NJ_P0058442 Snrpb2 protein_coding protein_coding MGP_C57BL6NJ_T0058443.1 MGP_C57BL6NJ_G0026995.1 mouse_genomes_project 2 151504290 151509308 + Snrpb2 protein_coding retained_intron MGP_C57BL6NJ_T0058444.1 MGP_C57BL6NJ_G0026995.1 mouse_genomes_project 2 151508061 151512737 + Snrpb2 protein_coding retained_intron MGP_C57BL6NJ_T0100187.1 MGP_C57BL6NJ_G0038233.1 mouse_genomes_project 2 38271621 38271729 + Gm25081 snRNA snRNA MGP_C57BL6NJ_T0056215.1 MGP_C57BL6NJ_G0026392.1 mouse_genomes_project 2 90251047 90251989 + MGP_C57BL6NJ_P0056215 Olfr1076 protein_coding protein_coding MGP_C57BL6NJ_T0007601.1 MGP_C57BL6NJ_G0006234.1 mouse_genomes_project 2 191257088 191259029 + 4930591A17Rik lincRNA lincRNA MGP_C57BL6NJ_T0056729.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98417710 98587161 - MGP_C57BL6NJ_P0056729 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056730.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98454183 98587180 - MGP_C57BL6NJ_P0056730 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056731.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98454665 98463702 - Ext2 protein_coding retained_intron MGP_C57BL6NJ_T0056732.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98454679 98587157 - MGP_C57BL6NJ_P0056732 Ext2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056733.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98461548 98465903 - MGP_C57BL6NJ_P0056733 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056734.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98462131 98463102 - MGP_C57BL6NJ_P0056734 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056735.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98474533 98587161 - Ext2 protein_coding processed_transcript MGP_C57BL6NJ_T0056736.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98524302 98560800 - Ext2 protein_coding retained_intron MGP_C57BL6NJ_T0056737.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98570924 98587177 - MGP_C57BL6NJ_P0056737 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056738.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98577939 98587157 - Ext2 protein_coding retained_intron MGP_C57BL6NJ_T0056739.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98578364 98587160 - MGP_C57BL6NJ_P0056739 Ext2 protein_coding protein_coding MGP_C57BL6NJ_T0056740.1 MGP_C57BL6NJ_G0026599.1 mouse_genomes_project 2 98578749 98587165 - Ext2 protein_coding processed_transcript MGP_C57BL6NJ_T0054021.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601826 27643457 + MGP_C57BL6NJ_P0054021 Tsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054022.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601835 27661911 + MGP_C57BL6NJ_P0054022 Tsc1 protein_coding protein_coding MGP_C57BL6NJ_T0054023.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601839 27659292 + MGP_C57BL6NJ_P0054023 Tsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054024.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601839 27661911 + MGP_C57BL6NJ_P0054024 Tsc1 protein_coding protein_coding MGP_C57BL6NJ_T0054025.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601841 27661911 + MGP_C57BL6NJ_P0054025 Tsc1 protein_coding protein_coding MGP_C57BL6NJ_T0054026.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601848 27644703 + Tsc1 protein_coding retained_intron MGP_C57BL6NJ_T0054027.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27601852 27638947 + Tsc1 protein_coding retained_intron MGP_C57BL6NJ_T0054028.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27629579 27661911 + MGP_C57BL6NJ_P0054028 Tsc1 protein_coding protein_coding MGP_C57BL6NJ_T0054029.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27634399 27636953 + Tsc1 protein_coding retained_intron MGP_C57BL6NJ_T0054030.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27642002 27644137 + Tsc1 protein_coding retained_intron MGP_C57BL6NJ_T0054031.1 MGP_C57BL6NJ_G0025946.1 mouse_genomes_project 2 27643227 27644279 + Tsc1 protein_coding retained_intron MGP_C57BL6NJ_T0056115.1 MGP_C57BL6NJ_G0026329.1 mouse_genomes_project 2 88158603 88170080 - MGP_C57BL6NJ_P0056115 Smtnl1 protein_coding protein_coding MGP_C57BL6NJ_T0010586.1 MGP_C57BL6NJ_G0008671.1 mouse_genomes_project 2 8066443 8066545 + Gm22925 miRNA miRNA MGP_C57BL6NJ_T0059532.1 MGP_C57BL6NJ_G0027259.1 mouse_genomes_project 2 174394693 174412143 + MGP_C57BL6NJ_P0059532 Stk4 protein_coding protein_coding MGP_C57BL6NJ_T0059533.1 MGP_C57BL6NJ_G0027259.1 mouse_genomes_project 2 174399755 174481896 + MGP_C57BL6NJ_P0059533 Stk4 protein_coding protein_coding MGP_C57BL6NJ_T0059534.1 MGP_C57BL6NJ_G0027259.1 mouse_genomes_project 2 174407139 174422185 + Stk4 protein_coding processed_transcript MGP_C57BL6NJ_T0059535.1 MGP_C57BL6NJ_G0027259.1 mouse_genomes_project 2 174436122 174481891 + MGP_C57BL6NJ_P0059535 Stk4 protein_coding protein_coding MGP_C57BL6NJ_T0058940.1 MGP_C57BL6NJ_G0027148.1 mouse_genomes_project 2 164205099 164205875 - Gm14214 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0058941.1 MGP_C57BL6NJ_G0027148.1 mouse_genomes_project 2 164205099 164205777 - MGP_C57BL6NJ_P0058941 Gm14214 protein_coding protein_coding MGP_C57BL6NJ_T0059258.1 MGP_C57BL6NJ_G0027198.1 mouse_genomes_project 2 166759760 166826282 - MGP_C57BL6NJ_P0059258 Soga1 protein_coding protein_coding MGP_C57BL6NJ_T0059259.1 MGP_C57BL6NJ_G0027198.1 mouse_genomes_project 2 166764831 166771434 - Soga1 protein_coding processed_transcript MGP_C57BL6NJ_T0059260.1 MGP_C57BL6NJ_G0027198.1 mouse_genomes_project 2 166781257 166784447 - Soga1 protein_coding processed_transcript MGP_C57BL6NJ_T0013817.1 MGP_C57BL6NJ_G0011862.1 mouse_genomes_project 2 36585611 36586107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007445.1 MGP_C57BL6NJ_G0006105.1 mouse_genomes_project 2 107265843 107278453 + Gm13905 lincRNA lincRNA MGP_C57BL6NJ_T0058045.1 MGP_C57BL6NJ_G0026910.1 mouse_genomes_project 2 136997517 137081329 - MGP_C57BL6NJ_P0058045 F830045P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0014064.1 MGP_C57BL6NJ_G0012109.1 mouse_genomes_project 2 125926322 125927067 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004056.1 MGP_C57BL6NJ_G0003617.1 mouse_genomes_project 2 16077895 16084979 + Gm13330 antisense antisense MGP_C57BL6NJ_T0018275.1 MGP_C57BL6NJ_G0015838.1 mouse_genomes_project 2 97546929 97606039 - Gm13791 processed_transcript processed_transcript MGP_C57BL6NJ_T0060412.1 MGP_C57BL6NJ_G0027459.1 mouse_genomes_project 2 193937726 193944220 + MGP_C57BL6NJ_P0060412 Polr3k protein_coding protein_coding MGP_C57BL6NJ_T0060413.1 MGP_C57BL6NJ_G0027459.1 mouse_genomes_project 2 193937749 193939599 + Polr3k protein_coding retained_intron MGP_C57BL6NJ_T0007389.1 MGP_C57BL6NJ_G0006060.1 mouse_genomes_project 2 69582692 69592933 - Gm26743 lincRNA lincRNA MGP_C57BL6NJ_T0013846.1 MGP_C57BL6NJ_G0011891.1 mouse_genomes_project 2 48729279 48729712 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056232.1 MGP_C57BL6NJ_G0026407.1 mouse_genomes_project 2 90873098 90874064 - MGP_C57BL6NJ_P0056232 Olfr1100 protein_coding protein_coding MGP_C57BL6NJ_T0099079.1 MGP_C57BL6NJ_G0037143.1 mouse_genomes_project 2 125034217 125034311 + Gm22651 rRNA rRNA MGP_C57BL6NJ_T0056687.1 MGP_C57BL6NJ_G0026588.1 mouse_genomes_project 2 97029621 97038677 - MGP_C57BL6NJ_P0056687 Mapk8ip1 protein_coding protein_coding MGP_C57BL6NJ_T0056688.1 MGP_C57BL6NJ_G0026588.1 mouse_genomes_project 2 97029625 97047131 - MGP_C57BL6NJ_P0056688 Mapk8ip1 protein_coding protein_coding MGP_C57BL6NJ_T0056689.1 MGP_C57BL6NJ_G0026588.1 mouse_genomes_project 2 97035847 97038678 - Mapk8ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0004326.1 MGP_C57BL6NJ_G0003816.1 mouse_genomes_project 2 183324099 183327674 + Gm14271 antisense antisense MGP_C57BL6NJ_T0057094.1 MGP_C57BL6NJ_G0026678.1 mouse_genomes_project 2 117414669 117415611 + MGP_C57BL6NJ_P0057094 protein_coding protein_coding MGP_C57BL6NJ_T0004129.1 MGP_C57BL6NJ_G0003673.1 mouse_genomes_project 2 61767779 61768834 + Gm13580 antisense antisense MGP_C57BL6NJ_T0057990.1 MGP_C57BL6NJ_G0026893.1 mouse_genomes_project 2 135921733 135923012 + MGP_C57BL6NJ_P0057990 Gm29010 protein_coding protein_coding MGP_C57BL6NJ_T0007549.1 MGP_C57BL6NJ_G0006189.1 mouse_genomes_project 2 171340363 171340955 - Gm14242 lincRNA lincRNA MGP_C57BL6NJ_T0103062.1 MGP_C57BL6NJ_G0040856.1 mouse_genomes_project 2 186673352 186676268 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014216.1 MGP_C57BL6NJ_G0012261.1 mouse_genomes_project 2 193976156 193978046 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056372.1 MGP_C57BL6NJ_G0026524.1 mouse_genomes_project 2 93957507 93958431 - MGP_C57BL6NJ_P0056372 Olfr1248 protein_coding protein_coding MGP_C57BL6NJ_T0055500.1 MGP_C57BL6NJ_G0026200.1 mouse_genomes_project 2 67855174 67902810 - MGP_C57BL6NJ_P0055500 Galnt3 protein_coding protein_coding MGP_C57BL6NJ_T0055501.1 MGP_C57BL6NJ_G0026200.1 mouse_genomes_project 2 67856526 67869833 - Galnt3 protein_coding processed_transcript MGP_C57BL6NJ_T0055502.1 MGP_C57BL6NJ_G0026200.1 mouse_genomes_project 2 67865770 67868680 - Galnt3 protein_coding processed_transcript MGP_C57BL6NJ_T0055503.1 MGP_C57BL6NJ_G0026200.1 mouse_genomes_project 2 67870249 67878263 - Galnt3 protein_coding processed_transcript MGP_C57BL6NJ_T0060013.1 MGP_C57BL6NJ_G0027384.1 mouse_genomes_project 2 185221199 185267167 + MGP_C57BL6NJ_P0060013 Vapb protein_coding protein_coding MGP_C57BL6NJ_T0060014.1 MGP_C57BL6NJ_G0027384.1 mouse_genomes_project 2 185250527 185259903 + Vapb protein_coding processed_transcript MGP_C57BL6NJ_T0013907.1 MGP_C57BL6NJ_G0011952.1 mouse_genomes_project 2 69615213 69617266 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007298.1 MGP_C57BL6NJ_G0005988.1 mouse_genomes_project 2 3516670 3517991 - Gm13383 lincRNA lincRNA MGP_C57BL6NJ_T0014175.1 MGP_C57BL6NJ_G0012220.1 mouse_genomes_project 2 168356414 168356725 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053289.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21228738 21245915 + Pdss1 protein_coding processed_transcript MGP_C57BL6NJ_T0053290.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21228738 21277392 + MGP_C57BL6NJ_P0053290 Pdss1 protein_coding protein_coding MGP_C57BL6NJ_T0053291.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21228811 21249429 + MGP_C57BL6NJ_P0053291 Pdss1 protein_coding protein_coding MGP_C57BL6NJ_T0053292.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21228835 21235046 + MGP_C57BL6NJ_P0053292 Pdss1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053293.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21229264 21240040 + MGP_C57BL6NJ_P0053293 Pdss1 protein_coding protein_coding MGP_C57BL6NJ_T0053294.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21271246 21277381 + Pdss1 protein_coding retained_intron MGP_C57BL6NJ_T0053295.1 MGP_C57BL6NJ_G0025810.1 mouse_genomes_project 2 21272682 21277368 + MGP_C57BL6NJ_P0053295 Pdss1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018215.1 MGP_C57BL6NJ_G0015797.1 mouse_genomes_project 2 26405651 26408588 + Gm13421 processed_transcript processed_transcript MGP_C57BL6NJ_T0018216.1 MGP_C57BL6NJ_G0015797.1 mouse_genomes_project 2 26405654 26408411 + Gm13421 processed_transcript processed_transcript MGP_C57BL6NJ_T0001206.1 MGP_C57BL6NJ_G0001112.1 mouse_genomes_project 2 38562715 38563486 - TEC TEC MGP_C57BL6NJ_T0056172.1 MGP_C57BL6NJ_G0026351.1 mouse_genomes_project 2 89160875 89161817 + MGP_C57BL6NJ_P0056172 Olfr1008 protein_coding protein_coding MGP_C57BL6NJ_T0004059.1 MGP_C57BL6NJ_G0003620.1 mouse_genomes_project 2 17850208 17853161 - Gm13348 antisense antisense MGP_C57BL6NJ_T0004237.1 MGP_C57BL6NJ_G0003747.1 mouse_genomes_project 2 137109692 137110714 - Gm14041 antisense antisense MGP_C57BL6NJ_T0055891.1 MGP_C57BL6NJ_G0026288.1 mouse_genomes_project 2 79357467 79378989 + MGP_C57BL6NJ_P0055891 Plekha3 protein_coding protein_coding MGP_C57BL6NJ_T0055892.1 MGP_C57BL6NJ_G0026288.1 mouse_genomes_project 2 79372020 79374925 + Plekha3 protein_coding processed_transcript MGP_C57BL6NJ_T0053340.1 MGP_C57BL6NJ_G0025820.1 mouse_genomes_project 2 22623060 22628754 + MGP_C57BL6NJ_P0053340 Il1f8 protein_coding protein_coding MGP_C57BL6NJ_T0018386.1 MGP_C57BL6NJ_G0015888.1 mouse_genomes_project 2 183765408 183780220 - Gm14455 processed_transcript processed_transcript MGP_C57BL6NJ_T0059569.1 MGP_C57BL6NJ_G0027276.1 mouse_genomes_project 2 174820828 174865228 + MGP_C57BL6NJ_P0059569 Gm20458 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011766.1 MGP_C57BL6NJ_G0009851.1 mouse_genomes_project 2 81352223 81352453 - Gm23149 misc_RNA misc_RNA MGP_C57BL6NJ_T0054077.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28367507 28560933 + MGP_C57BL6NJ_P0054077 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054078.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28367521 28511309 + MGP_C57BL6NJ_P0054078 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054079.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28404399 28545598 + MGP_C57BL6NJ_P0054079 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054080.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28404399 28535745 + MGP_C57BL6NJ_P0054080 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054081.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28405073 28535642 + MGP_C57BL6NJ_P0054081 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054082.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28405092 28560695 + MGP_C57BL6NJ_P0054082 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054083.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28405164 28510495 + MGP_C57BL6NJ_P0054083 Med27 protein_coding protein_coding MGP_C57BL6NJ_T0054084.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28419469 28558991 + Med27 protein_coding processed_transcript MGP_C57BL6NJ_T0054085.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28531929 28535967 + Med27 protein_coding retained_intron MGP_C57BL6NJ_T0054086.1 MGP_C57BL6NJ_G0025956.1 mouse_genomes_project 2 28540282 28560821 + Med27 protein_coding processed_transcript MGP_C57BL6NJ_T0056317.1 MGP_C57BL6NJ_G0026480.1 mouse_genomes_project 2 92781778 92782699 + MGP_C57BL6NJ_P0056317 Olfr1189 protein_coding protein_coding MGP_C57BL6NJ_T0013960.1 MGP_C57BL6NJ_G0012005.1 mouse_genomes_project 2 87303559 87303930 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054625.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32105974 32117517 - MGP_C57BL6NJ_P0054625 Fpgs protein_coding protein_coding MGP_C57BL6NJ_T0054626.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32105975 32117467 - Fpgs protein_coding retained_intron MGP_C57BL6NJ_T0054627.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32106182 32109322 - Fpgs protein_coding retained_intron MGP_C57BL6NJ_T0054628.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32106667 32108370 - Fpgs protein_coding processed_transcript MGP_C57BL6NJ_T0054629.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32109867 32110868 - Fpgs protein_coding retained_intron MGP_C57BL6NJ_T0054630.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32110214 32128663 - MGP_C57BL6NJ_P0054630 Fpgs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054631.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32110379 32111203 - Fpgs protein_coding retained_intron MGP_C57BL6NJ_T0054632.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32110781 32128671 - MGP_C57BL6NJ_P0054632 Fpgs protein_coding protein_coding MGP_C57BL6NJ_T0054633.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32115782 32116576 - Fpgs protein_coding retained_intron MGP_C57BL6NJ_T0054634.1 MGP_C57BL6NJ_G0026035.1 mouse_genomes_project 2 32116044 32128557 - MGP_C57BL6NJ_P0054634 Fpgs protein_coding protein_coding MGP_C57BL6NJ_T0014034.1 MGP_C57BL6NJ_G0012079.1 mouse_genomes_project 2 111990472 111990742 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056097.1 MGP_C57BL6NJ_G0026323.1 mouse_genomes_project 2 88020032 88048884 - MGP_C57BL6NJ_P0056097 Zdhhc5 protein_coding protein_coding MGP_C57BL6NJ_T0056098.1 MGP_C57BL6NJ_G0026323.1 mouse_genomes_project 2 88044901 88048390 - Zdhhc5 protein_coding processed_transcript MGP_C57BL6NJ_T0056099.1 MGP_C57BL6NJ_G0026323.1 mouse_genomes_project 2 88045050 88048740 - Zdhhc5 protein_coding processed_transcript MGP_C57BL6NJ_T0013922.1 MGP_C57BL6NJ_G0011967.1 mouse_genomes_project 2 75375638 75375935 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099363.1 MGP_C57BL6NJ_G0037421.1 mouse_genomes_project 2 1110360 1113710 + Gm10862 sense_intronic sense_intronic MGP_C57BL6NJ_T0055575.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738891 71763012 + MGP_C57BL6NJ_P0055575 Bbs5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055576.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738928 71763260 + MGP_C57BL6NJ_P0055576 Bbs5 protein_coding protein_coding MGP_C57BL6NJ_T0055577.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738936 71763260 + MGP_C57BL6NJ_P0055577 Bbs5 protein_coding protein_coding MGP_C57BL6NJ_T0055578.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738950 71743978 + Bbs5 protein_coding retained_intron MGP_C57BL6NJ_T0055579.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738973 71748635 + Bbs5 protein_coding retained_intron MGP_C57BL6NJ_T0055580.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71738983 71747479 + Bbs5 protein_coding retained_intron MGP_C57BL6NJ_T0055581.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71749810 71760722 + Bbs5 protein_coding retained_intron MGP_C57BL6NJ_T0055582.1 MGP_C57BL6NJ_G0026219.1 mouse_genomes_project 2 71751341 71763260 + MGP_C57BL6NJ_P0055582 Bbs5 protein_coding protein_coding MGP_C57BL6NJ_T0054951.1 MGP_C57BL6NJ_G0026108.1 mouse_genomes_project 2 36938312 36939242 + MGP_C57BL6NJ_P0054951 Olfr366 protein_coding protein_coding MGP_C57BL6NJ_T0054619.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32067186 32105484 + MGP_C57BL6NJ_P0054619 Eng protein_coding protein_coding MGP_C57BL6NJ_T0054620.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32067186 32106024 + MGP_C57BL6NJ_P0054620 Eng protein_coding protein_coding MGP_C57BL6NJ_T0054621.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32067213 32106035 + MGP_C57BL6NJ_P0054621 Eng protein_coding protein_coding MGP_C57BL6NJ_T0054622.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32067584 32072900 + Eng protein_coding processed_transcript MGP_C57BL6NJ_T0054623.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32096184 32097087 + Eng protein_coding retained_intron MGP_C57BL6NJ_T0054624.1 MGP_C57BL6NJ_G0026034.1 mouse_genomes_project 2 32096707 32104621 + MGP_C57BL6NJ_P0054624 Eng protein_coding protein_coding MGP_C57BL6NJ_T0007456.1 MGP_C57BL6NJ_G0006113.1 mouse_genomes_project 2 111742481 111744515 - Gm29053 lincRNA lincRNA MGP_C57BL6NJ_T0013912.1 MGP_C57BL6NJ_G0011957.1 mouse_genomes_project 2 71841156 71841589 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059520.1 MGP_C57BL6NJ_G0027254.1 mouse_genomes_project 2 174149970 174155295 + MGP_C57BL6NJ_P0059520 Kcnk15 protein_coding protein_coding MGP_C57BL6NJ_T0059521.1 MGP_C57BL6NJ_G0027254.1 mouse_genomes_project 2 174150052 174156099 + MGP_C57BL6NJ_P0059521 Kcnk15 protein_coding protein_coding MGP_C57BL6NJ_T0018281.1 MGP_C57BL6NJ_G0015840.1 mouse_genomes_project 2 98752228 98755770 + Alkbh3os1 processed_transcript processed_transcript MGP_C57BL6NJ_T0058596.1 MGP_C57BL6NJ_G0027035.1 mouse_genomes_project 2 157590357 157594286 + MGP_C57BL6NJ_P0058596 8030411F24Rik protein_coding protein_coding MGP_C57BL6NJ_T0055436.1 MGP_C57BL6NJ_G0026190.1 mouse_genomes_project 2 64110272 64164868 - MGP_C57BL6NJ_P0055436 Ifih1 protein_coding protein_coding MGP_C57BL6NJ_T0055437.1 MGP_C57BL6NJ_G0026190.1 mouse_genomes_project 2 64111921 64164810 - MGP_C57BL6NJ_P0055437 Ifih1 protein_coding protein_coding MGP_C57BL6NJ_T0055438.1 MGP_C57BL6NJ_G0026190.1 mouse_genomes_project 2 64124800 64164912 - Ifih1 protein_coding retained_intron MGP_C57BL6NJ_T0055439.1 MGP_C57BL6NJ_G0026190.1 mouse_genomes_project 2 64148109 64158130 - Ifih1 protein_coding processed_transcript MGP_C57BL6NJ_T0055440.1 MGP_C57BL6NJ_G0026190.1 mouse_genomes_project 2 64152144 64164815 - Ifih1 protein_coding retained_intron MGP_C57BL6NJ_T0010673.1 MGP_C57BL6NJ_G0008758.1 mouse_genomes_project 2 110034644 110034724 - Mir1902 miRNA miRNA MGP_C57BL6NJ_T0004051.1 MGP_C57BL6NJ_G0003613.1 mouse_genomes_project 2 11471156 11473075 + Gm37126 antisense antisense MGP_C57BL6NJ_T0010659.1 MGP_C57BL6NJ_G0008744.1 mouse_genomes_project 2 88079078 88079142 - Mir130a miRNA miRNA MGP_C57BL6NJ_T0014170.1 MGP_C57BL6NJ_G0012215.1 mouse_genomes_project 2 166259403 166260047 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014049.1 MGP_C57BL6NJ_G0012094.1 mouse_genomes_project 2 117789907 117790846 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056204.1 MGP_C57BL6NJ_G0026382.1 mouse_genomes_project 2 89922082 89923009 - MGP_C57BL6NJ_P0056204 Olfr1049 protein_coding protein_coding MGP_C57BL6NJ_T0007487.1 MGP_C57BL6NJ_G0006137.1 mouse_genomes_project 2 131346552 131352898 - 4930517E11Rik lincRNA lincRNA MGP_C57BL6NJ_T0018345.1 MGP_C57BL6NJ_G0015869.1 mouse_genomes_project 2 154280583 154320169 + BC039771 processed_transcript processed_transcript MGP_C57BL6NJ_T0018346.1 MGP_C57BL6NJ_G0015869.1 mouse_genomes_project 2 154306119 154356147 + BC039771 processed_transcript processed_transcript MGP_C57BL6NJ_T0014025.1 MGP_C57BL6NJ_G0012070.1 mouse_genomes_project 2 109388511 109388753 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007479.1 MGP_C57BL6NJ_G0006131.1 mouse_genomes_project 2 124450639 124456775 - Gm13985 lincRNA lincRNA MGP_C57BL6NJ_T0018348.1 MGP_C57BL6NJ_G0015871.1 mouse_genomes_project 2 159652602 159654044 + E130215H24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0013902.1 MGP_C57BL6NJ_G0011947.1 mouse_genomes_project 2 67922645 67922867 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056570.1 MGP_C57BL6NJ_G0026571.1 mouse_genomes_project 2 96048868 96070664 + Lrp4 protein_coding processed_transcript MGP_C57BL6NJ_T0056571.1 MGP_C57BL6NJ_G0026571.1 mouse_genomes_project 2 96048868 96108568 + MGP_C57BL6NJ_P0056571 Lrp4 protein_coding protein_coding MGP_C57BL6NJ_T0056572.1 MGP_C57BL6NJ_G0026571.1 mouse_genomes_project 2 96067632 96072248 + Lrp4 protein_coding processed_transcript MGP_C57BL6NJ_T0056573.1 MGP_C57BL6NJ_G0026571.1 mouse_genomes_project 2 96067695 96070219 + Lrp4 protein_coding processed_transcript MGP_C57BL6NJ_T0011762.1 MGP_C57BL6NJ_G0009847.1 mouse_genomes_project 2 68428669 68428953 + Gm23046 misc_RNA misc_RNA MGP_C57BL6NJ_T0054052.1 MGP_C57BL6NJ_G0025952.1 mouse_genomes_project 2 27908618 28050067 - MGP_C57BL6NJ_P0054052 Cfap77 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054053.1 MGP_C57BL6NJ_G0025952.1 mouse_genomes_project 2 27908622 28050082 - MGP_C57BL6NJ_P0054053 Cfap77 protein_coding protein_coding MGP_C57BL6NJ_T0054054.1 MGP_C57BL6NJ_G0025952.1 mouse_genomes_project 2 27909451 28034553 - Cfap77 protein_coding processed_transcript MGP_C57BL6NJ_T0054055.1 MGP_C57BL6NJ_G0025952.1 mouse_genomes_project 2 27937961 28050109 - MGP_C57BL6NJ_P0054055 Cfap77 protein_coding protein_coding MGP_C57BL6NJ_T0054056.1 MGP_C57BL6NJ_G0025952.1 mouse_genomes_project 2 28046939 28050102 - Cfap77 protein_coding processed_transcript MGP_C57BL6NJ_T0057214.1 MGP_C57BL6NJ_G0026729.1 mouse_genomes_project 2 123692622 123755701 + MGP_C57BL6NJ_P0057214 Spred1 protein_coding protein_coding MGP_C57BL6NJ_T0057215.1 MGP_C57BL6NJ_G0026729.1 mouse_genomes_project 2 123692886 123746288 + MGP_C57BL6NJ_P0057215 Spred1 protein_coding protein_coding MGP_C57BL6NJ_T0101529.1 MGP_C57BL6NJ_G0039575.1 mouse_genomes_project 2 158464843 158464935 - Gm24551 snoRNA snoRNA MGP_C57BL6NJ_T0060358.1 MGP_C57BL6NJ_G0027451.1 mouse_genomes_project 2 193652896 193656891 - MGP_C57BL6NJ_P0060358 Samd10 protein_coding protein_coding MGP_C57BL6NJ_T0060359.1 MGP_C57BL6NJ_G0027451.1 mouse_genomes_project 2 193652899 193656877 - MGP_C57BL6NJ_P0060359 Samd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060360.1 MGP_C57BL6NJ_G0027451.1 mouse_genomes_project 2 193654470 193655285 - Samd10 protein_coding retained_intron MGP_C57BL6NJ_T0055826.1 MGP_C57BL6NJ_G0026263.1 mouse_genomes_project 2 77200728 77207989 - MGP_C57BL6NJ_P0055826 Evx2 protein_coding protein_coding MGP_C57BL6NJ_T0055827.1 MGP_C57BL6NJ_G0026263.1 mouse_genomes_project 2 77204050 77207851 - MGP_C57BL6NJ_P0055827 Evx2 protein_coding protein_coding MGP_C57BL6NJ_T0060148.1 MGP_C57BL6NJ_G0027416.1 mouse_genomes_project 2 192421153 192470765 + MGP_C57BL6NJ_P0060148 Ntsr1 protein_coding protein_coding MGP_C57BL6NJ_T0060149.1 MGP_C57BL6NJ_G0027416.1 mouse_genomes_project 2 192421404 192470004 + MGP_C57BL6NJ_P0060149 Ntsr1 protein_coding protein_coding MGP_C57BL6NJ_T0103005.1 MGP_C57BL6NJ_G0040799.1 mouse_genomes_project 2 39277148 39283863 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0059592.1 MGP_C57BL6NJ_G0027282.1 mouse_genomes_project 2 174995486 175000738 - MGP_C57BL6NJ_P0059592 Eppin protein_coding protein_coding MGP_C57BL6NJ_T0056250.1 MGP_C57BL6NJ_G0026425.1 mouse_genomes_project 2 91361547 91362528 + MGP_C57BL6NJ_P0056250 Olfr1122 protein_coding protein_coding MGP_C57BL6NJ_T0013923.1 MGP_C57BL6NJ_G0011968.1 mouse_genomes_project 2 75558888 75559385 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014204.1 MGP_C57BL6NJ_G0012249.1 mouse_genomes_project 2 186038330 186039206 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059529.1 MGP_C57BL6NJ_G0027258.1 mouse_genomes_project 2 174376799 174389233 - Tomm34 protein_coding retained_intron MGP_C57BL6NJ_T0059530.1 MGP_C57BL6NJ_G0027258.1 mouse_genomes_project 2 174376799 174395541 - MGP_C57BL6NJ_P0059530 Tomm34 protein_coding protein_coding MGP_C57BL6NJ_T0059531.1 MGP_C57BL6NJ_G0027258.1 mouse_genomes_project 2 174376799 174395474 - MGP_C57BL6NJ_P0059531 Tomm34 protein_coding protein_coding MGP_C57BL6NJ_T0059353.1 MGP_C57BL6NJ_G0027217.1 mouse_genomes_project 2 168324553 168335061 + MGP_C57BL6NJ_P0059353 Snhg11 protein_coding protein_coding MGP_C57BL6NJ_T0059354.1 MGP_C57BL6NJ_G0027217.1 mouse_genomes_project 2 168324576 168326122 + Snhg11 protein_coding retained_intron MGP_C57BL6NJ_T0059355.1 MGP_C57BL6NJ_G0027217.1 mouse_genomes_project 2 168324613 168330503 + MGP_C57BL6NJ_P0059355 Snhg11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059356.1 MGP_C57BL6NJ_G0027217.1 mouse_genomes_project 2 168324630 168327978 + Snhg11 protein_coding retained_intron MGP_C57BL6NJ_T0059357.1 MGP_C57BL6NJ_G0027217.1 mouse_genomes_project 2 168324640 168329978 + MGP_C57BL6NJ_P0059357 Snhg11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056352.1 MGP_C57BL6NJ_G0026511.1 mouse_genomes_project 2 93610483 93611425 - MGP_C57BL6NJ_P0056352 Olfr1231 protein_coding protein_coding MGP_C57BL6NJ_T0014131.1 MGP_C57BL6NJ_G0012176.1 mouse_genomes_project 2 155836918 155837723 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099075.1 MGP_C57BL6NJ_G0037139.1 mouse_genomes_project 2 98117307 98117410 - Gm23380 rRNA rRNA MGP_C57BL6NJ_T0004088.1 MGP_C57BL6NJ_G0003640.1 mouse_genomes_project 2 28372348 28424585 - Gm13402 antisense antisense MGP_C57BL6NJ_T0060015.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185603897 185619871 + MGP_C57BL6NJ_P0060015 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0060016.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185603907 185618172 + MGP_C57BL6NJ_P0060016 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0060017.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185603911 185620964 + MGP_C57BL6NJ_P0060017 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0060018.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185604511 185627205 + MGP_C57BL6NJ_P0060018 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0060019.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185604647 185627204 + MGP_C57BL6NJ_P0060019 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0060020.1 MGP_C57BL6NJ_G0027385.1 mouse_genomes_project 2 185604655 185624404 + MGP_C57BL6NJ_P0060020 Stx16 protein_coding protein_coding MGP_C57BL6NJ_T0055714.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74070453 74146579 + Itga6 protein_coding processed_transcript MGP_C57BL6NJ_T0055715.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74113459 74147268 + Itga6 protein_coding processed_transcript MGP_C57BL6NJ_T0055716.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74113470 74193912 + MGP_C57BL6NJ_P0055716 Itga6 protein_coding protein_coding MGP_C57BL6NJ_T0055717.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74113669 74195374 + MGP_C57BL6NJ_P0055717 Itga6 protein_coding protein_coding MGP_C57BL6NJ_T0055718.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74170718 74171552 + Itga6 protein_coding processed_transcript MGP_C57BL6NJ_T0055719.1 MGP_C57BL6NJ_G0026245.1 mouse_genomes_project 2 74183316 74195557 + Itga6 protein_coding processed_transcript MGP_C57BL6NJ_T0058474.1 MGP_C57BL6NJ_G0027006.1 mouse_genomes_project 2 152912355 152918407 + MGP_C57BL6NJ_P0058474 Pet117 protein_coding protein_coding MGP_C57BL6NJ_T0055020.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38523740 38754160 - MGP_C57BL6NJ_P0055020 Nr6a1 protein_coding protein_coding MGP_C57BL6NJ_T0055021.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38523744 38752709 - MGP_C57BL6NJ_P0055021 Nr6a1 protein_coding protein_coding MGP_C57BL6NJ_T0055022.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38523744 38603835 - MGP_C57BL6NJ_P0055022 Nr6a1 protein_coding protein_coding MGP_C57BL6NJ_T0055023.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38539349 38542217 - Nr6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0055024.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38540479 38544710 - Nr6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0055025.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38540887 38603840 - MGP_C57BL6NJ_P0055025 Nr6a1 protein_coding protein_coding MGP_C57BL6NJ_T0055026.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38542176 38604431 - Nr6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0055027.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38542295 38752767 - MGP_C57BL6NJ_P0055027 Nr6a1 protein_coding protein_coding MGP_C57BL6NJ_T0055028.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38544193 38603789 - Nr6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0055029.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38544709 38572219 - Nr6a1 protein_coding retained_intron MGP_C57BL6NJ_T0055030.1 MGP_C57BL6NJ_G0026123.1 mouse_genomes_project 2 38601249 38603789 - Nr6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0100171.1 MGP_C57BL6NJ_G0038217.1 mouse_genomes_project 2 1426456 1426563 - Gm23691 snRNA snRNA MGP_C57BL6NJ_T0004289.1 MGP_C57BL6NJ_G0003787.1 mouse_genomes_project 2 165936776 165946591 - Gm14252 antisense antisense MGP_C57BL6NJ_T0055639.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72727106 72742616 + MGP_C57BL6NJ_P0055639 Gad1 protein_coding protein_coding MGP_C57BL6NJ_T0055640.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72737425 72781136 + MGP_C57BL6NJ_P0055640 Gad1 protein_coding protein_coding MGP_C57BL6NJ_T0055641.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72737425 72763954 + MGP_C57BL6NJ_P0055641 Gad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055642.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72737546 72752510 + Gad1 protein_coding retained_intron MGP_C57BL6NJ_T0055643.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72737579 72759980 + MGP_C57BL6NJ_P0055643 Gad1 protein_coding protein_coding MGP_C57BL6NJ_T0055644.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72738281 72760501 + MGP_C57BL6NJ_P0055644 Gad1 protein_coding protein_coding MGP_C57BL6NJ_T0055645.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72738824 72761326 + MGP_C57BL6NJ_P0055645 Gad1 protein_coding protein_coding MGP_C57BL6NJ_T0055646.1 MGP_C57BL6NJ_G0026232.1 mouse_genomes_project 2 72741759 72781134 + Gad1 protein_coding processed_transcript MGP_C57BL6NJ_T0103012.1 MGP_C57BL6NJ_G0040806.1 mouse_genomes_project 2 89122905 89123630 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007491.1 MGP_C57BL6NJ_G0006141.1 mouse_genomes_project 2 133873424 133906314 - Gm26697 lincRNA lincRNA MGP_C57BL6NJ_T0007366.1 MGP_C57BL6NJ_G0006039.1 mouse_genomes_project 2 46916023 46941596 - Gm13470 lincRNA lincRNA MGP_C57BL6NJ_T0058336.1 MGP_C57BL6NJ_G0026972.1 mouse_genomes_project 2 141374427 141387660 + MGP_C57BL6NJ_P0058336 Bmp2 protein_coding protein_coding MGP_C57BL6NJ_T0014181.1 MGP_C57BL6NJ_G0012226.1 mouse_genomes_project 2 171425604 171426054 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056257.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91489001 91491665 + Pramel6 protein_coding processed_transcript MGP_C57BL6NJ_T0056258.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91489001 91491656 + Pramel6 protein_coding processed_transcript MGP_C57BL6NJ_T0056259.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91489019 91491836 + Pramel6 protein_coding processed_transcript MGP_C57BL6NJ_T0056260.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91489861 91491749 + Pramel6 protein_coding processed_transcript MGP_C57BL6NJ_T0056261.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91489861 91493309 + MGP_C57BL6NJ_P0056261 Pramel6 protein_coding protein_coding MGP_C57BL6NJ_T0056262.1 MGP_C57BL6NJ_G0026430.1 mouse_genomes_project 2 91490894 91493302 + MGP_C57BL6NJ_P0056262 Pramel6 protein_coding protein_coding MGP_C57BL6NJ_T0057171.1 MGP_C57BL6NJ_G0026722.1 mouse_genomes_project 2 120378527 120384131 - MGP_C57BL6NJ_P0057171 Actc1 protein_coding protein_coding MGP_C57BL6NJ_T0057172.1 MGP_C57BL6NJ_G0026722.1 mouse_genomes_project 2 120383148 120384792 - MGP_C57BL6NJ_P0057172 Actc1 protein_coding protein_coding MGP_C57BL6NJ_T0059965.1 MGP_C57BL6NJ_G0027368.1 mouse_genomes_project 2 183780215 183811201 + MGP_C57BL6NJ_P0059965 Rtfdc1 protein_coding protein_coding MGP_C57BL6NJ_T0059966.1 MGP_C57BL6NJ_G0027368.1 mouse_genomes_project 2 183780261 183806139 + Rtfdc1 protein_coding retained_intron MGP_C57BL6NJ_T0059969.1 MGP_C57BL6NJ_G0027368.1 mouse_genomes_project 2 183792625 183811201 + Rtfdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052870.1 MGP_C57BL6NJ_G0025740.1 mouse_genomes_project 2 3071723 3072578 - Gm13199 protein_coding processed_transcript MGP_C57BL6NJ_T0052871.1 MGP_C57BL6NJ_G0025740.1 mouse_genomes_project 2 3071724 3072567 - MGP_C57BL6NJ_P0052871 Gm13199 protein_coding protein_coding MGP_C57BL6NJ_T0011753.1 MGP_C57BL6NJ_G0009838.1 mouse_genomes_project 2 23144996 23145321 + Gm25455 misc_RNA misc_RNA MGP_C57BL6NJ_T0054693.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411558 32414496 + MGP_C57BL6NJ_P0054693 Rpl12 protein_coding protein_coding MGP_C57BL6NJ_T0054694.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411719 32415345 + Rpl12 protein_coding retained_intron MGP_C57BL6NJ_T0054695.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411728 32414045 + Rpl12 protein_coding retained_intron MGP_C57BL6NJ_T0054696.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411731 32412938 + Rpl12 protein_coding retained_intron MGP_C57BL6NJ_T0054697.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411739 32413311 + Rpl12 protein_coding retained_intron MGP_C57BL6NJ_T0054698.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32411739 32414043 + MGP_C57BL6NJ_P0054698 Rpl12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054699.1 MGP_C57BL6NJ_G0026046.1 mouse_genomes_project 2 32412265 32413066 + Rpl12 protein_coding retained_intron MGP_C57BL6NJ_T0056852.1 MGP_C57BL6NJ_G0026621.1 mouse_genomes_project 2 108522505 108575848 - MGP_C57BL6NJ_P0056852 Pdhx protein_coding protein_coding MGP_C57BL6NJ_T0056853.1 MGP_C57BL6NJ_G0026621.1 mouse_genomes_project 2 108534707 108575670 - MGP_C57BL6NJ_P0056853 Pdhx protein_coding protein_coding MGP_C57BL6NJ_T0056854.1 MGP_C57BL6NJ_G0026621.1 mouse_genomes_project 2 108540847 108575797 - MGP_C57BL6NJ_P0056854 Pdhx protein_coding protein_coding MGP_C57BL6NJ_T0058708.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160774541 160807776 - MGP_C57BL6NJ_P0058708 Psmf1 protein_coding protein_coding MGP_C57BL6NJ_T0058709.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160774791 160779725 - Psmf1 protein_coding retained_intron MGP_C57BL6NJ_T0058710.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160774791 160807759 - MGP_C57BL6NJ_P0058710 Psmf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058711.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160776994 160810652 - MGP_C57BL6NJ_P0058711 Psmf1 protein_coding protein_coding MGP_C57BL6NJ_T0058712.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160778214 160788659 - Psmf1 protein_coding retained_intron MGP_C57BL6NJ_T0058713.1 MGP_C57BL6NJ_G0027069.1 mouse_genomes_project 2 160786175 160807759 - Psmf1 protein_coding retained_intron MGP_C57BL6NJ_T0018259.1 MGP_C57BL6NJ_G0015828.1 mouse_genomes_project 2 90743112 90744431 - Gm13723 processed_transcript processed_transcript MGP_C57BL6NJ_T0011778.1 MGP_C57BL6NJ_G0009863.1 mouse_genomes_project 2 155952873 155953197 - Gm22261 misc_RNA misc_RNA MGP_C57BL6NJ_T0053099.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11903870 11969784 + MGP_C57BL6NJ_P0053099 Stam protein_coding protein_coding MGP_C57BL6NJ_T0053100.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11903880 11947808 + Stam protein_coding processed_transcript MGP_C57BL6NJ_T0053101.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11903961 11964515 + MGP_C57BL6NJ_P0053101 Stam protein_coding protein_coding MGP_C57BL6NJ_T0053102.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11903994 11967690 + MGP_C57BL6NJ_P0053102 Stam protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053103.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11904199 11948268 + MGP_C57BL6NJ_P0053103 Stam protein_coding protein_coding MGP_C57BL6NJ_T0053104.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11947531 11948363 + Stam protein_coding retained_intron MGP_C57BL6NJ_T0053105.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11948241 11950585 + Stam protein_coding processed_transcript MGP_C57BL6NJ_T0053106.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11950038 11959332 + Stam protein_coding retained_intron MGP_C57BL6NJ_T0053107.1 MGP_C57BL6NJ_G0025775.1 mouse_genomes_project 2 11953316 11959274 + Stam protein_coding retained_intron MGP_C57BL6NJ_T0013801.1 MGP_C57BL6NJ_G0011846.1 mouse_genomes_project 2 30164411 30164791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056397.1 MGP_C57BL6NJ_G0026540.1 mouse_genomes_project 2 94393135 94394062 - MGP_C57BL6NJ_P0056397 Olfr1264 protein_coding protein_coding MGP_C57BL6NJ_T0058332.1 MGP_C57BL6NJ_G0026971.1 mouse_genomes_project 2 140684544 140728916 - Fermt1 protein_coding retained_intron MGP_C57BL6NJ_T0058333.1 MGP_C57BL6NJ_G0026971.1 mouse_genomes_project 2 140684544 140729193 - MGP_C57BL6NJ_P0058333 Fermt1 protein_coding protein_coding MGP_C57BL6NJ_T0058334.1 MGP_C57BL6NJ_G0026971.1 mouse_genomes_project 2 140719001 140724986 - Fermt1 protein_coding processed_transcript MGP_C57BL6NJ_T0058335.1 MGP_C57BL6NJ_G0026971.1 mouse_genomes_project 2 140721984 140724852 - Fermt1 protein_coding processed_transcript MGP_C57BL6NJ_T0007339.1 MGP_C57BL6NJ_G0006018.1 mouse_genomes_project 2 27253936 27262814 - Gm13373 lincRNA lincRNA MGP_C57BL6NJ_T0018391.1 MGP_C57BL6NJ_G0015891.1 mouse_genomes_project 2 191860780 191864058 + 4921531C22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018392.1 MGP_C57BL6NJ_G0015891.1 mouse_genomes_project 2 191862493 191863032 + 4921531C22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0059472.1 MGP_C57BL6NJ_G0027241.1 mouse_genomes_project 2 173327729 173328551 - MGP_C57BL6NJ_P0059472 Gtsf1l protein_coding protein_coding MGP_C57BL6NJ_T0060383.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779763 193785733 + MGP_C57BL6NJ_P0060383 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060384.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779789 193785723 + MGP_C57BL6NJ_P0060384 Oprl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060385.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779793 193783338 + MGP_C57BL6NJ_P0060385 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060386.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779814 193785722 + MGP_C57BL6NJ_P0060386 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060387.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779830 193785720 + MGP_C57BL6NJ_P0060387 Oprl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060388.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779841 193785722 + Oprl1 protein_coding processed_transcript MGP_C57BL6NJ_T0060389.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193779848 193781126 + Oprl1 protein_coding processed_transcript MGP_C57BL6NJ_T0060390.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193780095 193785720 + MGP_C57BL6NJ_P0060390 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060391.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193780340 193784099 + MGP_C57BL6NJ_P0060391 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060392.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193780449 193784120 + MGP_C57BL6NJ_P0060392 Oprl1 protein_coding protein_coding MGP_C57BL6NJ_T0060393.1 MGP_C57BL6NJ_G0027456.1 mouse_genomes_project 2 193780450 193784120 + MGP_C57BL6NJ_P0060393 Oprl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059241.1 MGP_C57BL6NJ_G0027195.1 mouse_genomes_project 2 166527181 166543170 - MGP_C57BL6NJ_P0059241 Sla2 protein_coding protein_coding MGP_C57BL6NJ_T0059243.1 MGP_C57BL6NJ_G0027195.1 mouse_genomes_project 2 166527646 166543284 - MGP_C57BL6NJ_P0059243 Sla2 protein_coding protein_coding MGP_C57BL6NJ_T0102216.1 MGP_C57BL6NJ_G0040220.1 mouse_genomes_project 2 39024841 39029591 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102217.1 MGP_C57BL6NJ_G0040220.1 mouse_genomes_project 2 39028572 39029345 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0007540.1 MGP_C57BL6NJ_G0006182.1 mouse_genomes_project 2 166479900 166486672 - Gm14230 lincRNA lincRNA MGP_C57BL6NJ_T0007541.1 MGP_C57BL6NJ_G0006182.1 mouse_genomes_project 2 166484673 166486744 - Gm14230 lincRNA lincRNA MGP_C57BL6NJ_T0007542.1 MGP_C57BL6NJ_G0006182.1 mouse_genomes_project 2 166485323 166486652 - Gm14230 lincRNA lincRNA MGP_C57BL6NJ_T0100221.1 MGP_C57BL6NJ_G0038267.1 mouse_genomes_project 2 141410281 141410388 - Gm25258 snRNA snRNA MGP_C57BL6NJ_T0059849.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178275498 178288367 - MGP_C57BL6NJ_P0059849 Spata2 protein_coding protein_coding MGP_C57BL6NJ_T0059850.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178279248 178288325 - MGP_C57BL6NJ_P0059850 Spata2 protein_coding protein_coding MGP_C57BL6NJ_T0059851.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178280070 178281381 - Spata2 protein_coding retained_intron MGP_C57BL6NJ_T0059852.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178280905 178288352 - Spata2 protein_coding processed_transcript MGP_C57BL6NJ_T0059853.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178280956 178288325 - Spata2 protein_coding processed_transcript MGP_C57BL6NJ_T0059854.1 MGP_C57BL6NJ_G0027336.1 mouse_genomes_project 2 178281063 178288358 - Spata2 protein_coding processed_transcript MGP_C57BL6NJ_T0010699.1 MGP_C57BL6NJ_G0008784.1 mouse_genomes_project 2 161041948 161042037 - Mir1953 miRNA miRNA MGP_C57BL6NJ_T0004162.1 MGP_C57BL6NJ_G0003697.1 mouse_genomes_project 2 75891465 75898699 + Gm13707 antisense antisense MGP_C57BL6NJ_T0057236.1 MGP_C57BL6NJ_G0026736.1 mouse_genomes_project 2 125166566 125170428 - MGP_C57BL6NJ_P0057236 Srp14 protein_coding protein_coding MGP_C57BL6NJ_T0057237.1 MGP_C57BL6NJ_G0026736.1 mouse_genomes_project 2 125166567 125169600 - Srp14 protein_coding processed_transcript MGP_C57BL6NJ_T0057238.1 MGP_C57BL6NJ_G0026736.1 mouse_genomes_project 2 125166577 125170365 - Srp14 protein_coding processed_transcript MGP_C57BL6NJ_T0057239.1 MGP_C57BL6NJ_G0026736.1 mouse_genomes_project 2 125169281 125170352 - MGP_C57BL6NJ_P0057239 Srp14 protein_coding protein_coding MGP_C57BL6NJ_T0058862.1 MGP_C57BL6NJ_G0027122.1 mouse_genomes_project 2 163046045 163081721 + MGP_C57BL6NJ_P0058862 Mapre1 protein_coding protein_coding MGP_C57BL6NJ_T0058863.1 MGP_C57BL6NJ_G0027122.1 mouse_genomes_project 2 163046373 163064113 + Mapre1 protein_coding processed_transcript MGP_C57BL6NJ_T0058864.1 MGP_C57BL6NJ_G0027122.1 mouse_genomes_project 2 163050164 163062109 + Mapre1 protein_coding processed_transcript MGP_C57BL6NJ_T0057143.1 MGP_C57BL6NJ_G0026714.1 mouse_genomes_project 2 118750923 118900445 + MGP_C57BL6NJ_P0057143 Aven protein_coding protein_coding MGP_C57BL6NJ_T0057144.1 MGP_C57BL6NJ_G0026714.1 mouse_genomes_project 2 118814722 118895967 + Aven protein_coding processed_transcript MGP_C57BL6NJ_T0057145.1 MGP_C57BL6NJ_G0026714.1 mouse_genomes_project 2 118815074 118896802 + MGP_C57BL6NJ_P0057145 Aven protein_coding protein_coding MGP_C57BL6NJ_T0013890.1 MGP_C57BL6NJ_G0011935.1 mouse_genomes_project 2 61619794 61620513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056353.1 MGP_C57BL6NJ_G0026512.1 mouse_genomes_project 2 93633479 93634415 - MGP_C57BL6NJ_P0056353 Olfr1232 protein_coding protein_coding MGP_C57BL6NJ_T0055808.1 MGP_C57BL6NJ_G0026261.1 mouse_genomes_project 2 76425819 76428699 - MGP_C57BL6NJ_P0055808 Atp5g3 protein_coding protein_coding MGP_C57BL6NJ_T0055809.1 MGP_C57BL6NJ_G0026261.1 mouse_genomes_project 2 76425819 76428698 - MGP_C57BL6NJ_P0055809 Atp5g3 protein_coding protein_coding MGP_C57BL6NJ_T0055810.1 MGP_C57BL6NJ_G0026261.1 mouse_genomes_project 2 76426103 76428655 - Atp5g3 protein_coding processed_transcript MGP_C57BL6NJ_T0055811.1 MGP_C57BL6NJ_G0026261.1 mouse_genomes_project 2 76426555 76427832 - Atp5g3 protein_coding processed_transcript MGP_C57BL6NJ_T0055812.1 MGP_C57BL6NJ_G0026261.1 mouse_genomes_project 2 76426690 76428664 - Atp5g3 protein_coding processed_transcript MGP_C57BL6NJ_T0013746.1 MGP_C57BL6NJ_G0011791.1 mouse_genomes_project 2 9065228 9066225 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056163.1 MGP_C57BL6NJ_G0026343.1 mouse_genomes_project 2 88864198 88865143 - MGP_C57BL6NJ_P0056163 Olfr994 protein_coding protein_coding MGP_C57BL6NJ_T0018253.1 MGP_C57BL6NJ_G0015822.1 mouse_genomes_project 2 77231774 77242511 + Gm28309 processed_transcript processed_transcript MGP_C57BL6NJ_T0058318.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140581056 140587473 - Trmt6 protein_coding retained_intron MGP_C57BL6NJ_T0058319.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140581056 140592893 - Trmt6 protein_coding processed_transcript MGP_C57BL6NJ_T0058320.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140581056 140592892 - MGP_C57BL6NJ_P0058320 Trmt6 protein_coding protein_coding MGP_C57BL6NJ_T0058321.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140587254 140592596 - Trmt6 protein_coding processed_transcript MGP_C57BL6NJ_T0058322.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140587279 140589345 - Trmt6 protein_coding processed_transcript MGP_C57BL6NJ_T0058323.1 MGP_C57BL6NJ_G0026967.1 mouse_genomes_project 2 140588604 140592851 - Trmt6 protein_coding processed_transcript MGP_C57BL6NJ_T0053224.1 MGP_C57BL6NJ_G0025799.1 mouse_genomes_project 2 17672978 17767648 - MGP_C57BL6NJ_P0053224 4921504E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0053225.1 MGP_C57BL6NJ_G0025799.1 mouse_genomes_project 2 17709446 17767648 - 4921504E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0054947.1 MGP_C57BL6NJ_G0026104.1 mouse_genomes_project 2 36798718 36799687 - MGP_C57BL6NJ_P0054947 Olfr361 protein_coding protein_coding MGP_C57BL6NJ_T0101546.1 MGP_C57BL6NJ_G0039592.1 mouse_genomes_project 2 175763139 175763270 - Gm25569 snoRNA snoRNA MGP_C57BL6NJ_T0058461.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152782418 152803033 - MGP_C57BL6NJ_P0058461 Snx5 protein_coding protein_coding MGP_C57BL6NJ_T0058462.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152782418 152802699 - MGP_C57BL6NJ_P0058462 Snx5 protein_coding protein_coding MGP_C57BL6NJ_T0058463.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152783359 152786023 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0058464.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152783411 152784995 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0058465.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152786042 152787721 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0058466.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152787008 152787700 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0058467.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152787111 152792891 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0058468.1 MGP_C57BL6NJ_G0027002.1 mouse_genomes_project 2 152801580 152802911 - Snx5 protein_coding processed_transcript MGP_C57BL6NJ_T0057107.1 MGP_C57BL6NJ_G0026690.1 mouse_genomes_project 2 117847549 117848488 - MGP_C57BL6NJ_P0057107 protein_coding protein_coding MGP_C57BL6NJ_T0058602.1 MGP_C57BL6NJ_G0027038.1 mouse_genomes_project 2 157633525 157648248 + MGP_C57BL6NJ_P0058602 Cst13 protein_coding protein_coding MGP_C57BL6NJ_T0057120.1 MGP_C57BL6NJ_G0026703.1 mouse_genomes_project 2 118319866 118320805 - MGP_C57BL6NJ_P0057120 Olfr1314 protein_coding protein_coding MGP_C57BL6NJ_T0056237.1 MGP_C57BL6NJ_G0026412.1 mouse_genomes_project 2 90948024 90948963 - MGP_C57BL6NJ_P0056237 Olfr1106 protein_coding protein_coding MGP_C57BL6NJ_T0058209.1 MGP_C57BL6NJ_G0026946.1 mouse_genomes_project 2 138824459 138829345 - MGP_C57BL6NJ_P0058209 Cenpb protein_coding protein_coding MGP_C57BL6NJ_T0056175.1 MGP_C57BL6NJ_G0026354.1 mouse_genomes_project 2 89244041 89247737 + MGP_C57BL6NJ_P0056175 Olfr1013 protein_coding protein_coding MGP_C57BL6NJ_T0014072.1 MGP_C57BL6NJ_G0012117.1 mouse_genomes_project 2 128706297 128707258 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057488.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127400746 127431407 - MGP_C57BL6NJ_P0057488 Zfp106 protein_coding protein_coding MGP_C57BL6NJ_T0057489.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127401218 127456476 - MGP_C57BL6NJ_P0057489 Zfp106 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0057490.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127401471 127404008 - Zfp106 protein_coding retained_intron MGP_C57BL6NJ_T0057491.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127409993 127411689 - Zfp106 protein_coding retained_intron MGP_C57BL6NJ_T0057492.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127413843 127415762 - MGP_C57BL6NJ_P0057492 Zfp106 protein_coding protein_coding MGP_C57BL6NJ_T0057493.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127417405 127456472 - Zfp106 protein_coding retained_intron MGP_C57BL6NJ_T0057494.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127417869 127419658 - Zfp106 protein_coding retained_intron MGP_C57BL6NJ_T0057495.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127419482 127423201 - MGP_C57BL6NJ_P0057495 Zfp106 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057496.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127423028 127456501 - MGP_C57BL6NJ_P0057496 Zfp106 protein_coding protein_coding MGP_C57BL6NJ_T0057497.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127426982 127447957 - MGP_C57BL6NJ_P0057497 Zfp106 protein_coding protein_coding MGP_C57BL6NJ_T0057498.1 MGP_C57BL6NJ_G0026789.1 mouse_genomes_project 2 127427115 127456492 - Zfp106 protein_coding processed_transcript MGP_C57BL6NJ_T0053929.1 MGP_C57BL6NJ_G0025926.1 mouse_genomes_project 2 25903512 25932998 + MGP_C57BL6NJ_P0053929 Adamtsl2 protein_coding protein_coding MGP_C57BL6NJ_T0053930.1 MGP_C57BL6NJ_G0025926.1 mouse_genomes_project 2 25921312 25932992 + Adamtsl2 protein_coding retained_intron MGP_C57BL6NJ_T0053931.1 MGP_C57BL6NJ_G0025926.1 mouse_genomes_project 2 25922059 25922675 + Adamtsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0053932.1 MGP_C57BL6NJ_G0025926.1 mouse_genomes_project 2 25927802 25931423 + Adamtsl2 protein_coding retained_intron MGP_C57BL6NJ_T0053933.1 MGP_C57BL6NJ_G0025926.1 mouse_genomes_project 2 25928679 25932998 + Adamtsl2 protein_coding retained_intron MGP_C57BL6NJ_T0058809.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162189914 162196452 - MGP_C57BL6NJ_P0058809 Pdrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058810.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162189914 162196452 - MGP_C57BL6NJ_P0058810 Pdrg1 protein_coding protein_coding MGP_C57BL6NJ_T0058811.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162190494 162193515 - Pdrg1 protein_coding retained_intron MGP_C57BL6NJ_T0058812.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162191317 162196391 - MGP_C57BL6NJ_P0058812 Pdrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058813.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162193237 162196371 - Pdrg1 protein_coding retained_intron MGP_C57BL6NJ_T0058814.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162193407 162196387 - MGP_C57BL6NJ_P0058814 Pdrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058815.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162194375 162196402 - Pdrg1 protein_coding retained_intron MGP_C57BL6NJ_T0058816.1 MGP_C57BL6NJ_G0027108.1 mouse_genomes_project 2 162195039 162196367 - Pdrg1 protein_coding processed_transcript MGP_C57BL6NJ_T0058126.1 MGP_C57BL6NJ_G0026928.1 mouse_genomes_project 2 138168630 138172278 + Mrps26 protein_coding retained_intron MGP_C57BL6NJ_T0058127.1 MGP_C57BL6NJ_G0026928.1 mouse_genomes_project 2 138168630 138175474 + MGP_C57BL6NJ_P0058127 Mrps26 protein_coding protein_coding MGP_C57BL6NJ_T0057979.1 MGP_C57BL6NJ_G0026891.1 mouse_genomes_project 2 135251008 135290954 + Acoxl protein_coding processed_transcript MGP_C57BL6NJ_T0057980.1 MGP_C57BL6NJ_G0026891.1 mouse_genomes_project 2 135267829 135556968 + MGP_C57BL6NJ_P0057980 Acoxl protein_coding protein_coding MGP_C57BL6NJ_T0057981.1 MGP_C57BL6NJ_G0026891.1 mouse_genomes_project 2 135323031 135556603 + MGP_C57BL6NJ_P0057981 Acoxl protein_coding protein_coding MGP_C57BL6NJ_T0055874.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79075039 79076463 + Osbpl6 protein_coding processed_transcript MGP_C57BL6NJ_T0055875.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79075069 79277036 + MGP_C57BL6NJ_P0055875 Osbpl6 protein_coding protein_coding MGP_C57BL6NJ_T0055876.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79075069 79277040 + MGP_C57BL6NJ_P0055876 Osbpl6 protein_coding protein_coding MGP_C57BL6NJ_T0055877.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79075089 79272989 + MGP_C57BL6NJ_P0055877 Osbpl6 protein_coding protein_coding MGP_C57BL6NJ_T0055878.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79075092 79075999 + Osbpl6 protein_coding processed_transcript MGP_C57BL6NJ_T0055879.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79170716 79215602 + Osbpl6 protein_coding processed_transcript MGP_C57BL6NJ_T0055880.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79222371 79272438 + MGP_C57BL6NJ_P0055880 Osbpl6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0055881.1 MGP_C57BL6NJ_G0026284.1 mouse_genomes_project 2 79242151 79256404 + Osbpl6 protein_coding processed_transcript MGP_C57BL6NJ_T0055648.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72842794 72872922 + MGP_C57BL6NJ_P0055648 Gorasp2 protein_coding protein_coding MGP_C57BL6NJ_T0055649.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72842794 72872904 + MGP_C57BL6NJ_P0055649 Gorasp2 protein_coding protein_coding MGP_C57BL6NJ_T0055650.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72842794 72897213 + MGP_C57BL6NJ_P0055650 Gorasp2 protein_coding protein_coding MGP_C57BL6NJ_T0055651.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72842808 72870539 + MGP_C57BL6NJ_P0055651 Gorasp2 protein_coding protein_coding MGP_C57BL6NJ_T0055652.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72843418 72859129 + Gorasp2 protein_coding processed_transcript MGP_C57BL6NJ_T0055653.1 MGP_C57BL6NJ_G0026234.1 mouse_genomes_project 2 72868991 72872900 + Gorasp2 protein_coding processed_transcript MGP_C57BL6NJ_T0013808.1 MGP_C57BL6NJ_G0011853.1 mouse_genomes_project 2 33142146 33142556 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053276.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20634018 20924201 + MGP_C57BL6NJ_P0053276 Myo3a protein_coding protein_coding MGP_C57BL6NJ_T0053277.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20634020 20708510 + Myo3a protein_coding processed_transcript MGP_C57BL6NJ_T0053278.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20634020 20697824 + Myo3a protein_coding processed_transcript MGP_C57BL6NJ_T0053279.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20647569 20828190 + MGP_C57BL6NJ_P0053279 Myo3a protein_coding protein_coding MGP_C57BL6NJ_T0053280.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20864266 20924196 + MGP_C57BL6NJ_P0053280 Myo3a protein_coding protein_coding MGP_C57BL6NJ_T0053281.1 MGP_C57BL6NJ_G0025806.1 mouse_genomes_project 2 20884138 20911662 + Myo3a protein_coding processed_transcript MGP_C57BL6NJ_T0056361.1 MGP_C57BL6NJ_G0026518.1 mouse_genomes_project 2 93817479 93818424 - MGP_C57BL6NJ_P0056361 Olfr1241 protein_coding protein_coding MGP_C57BL6NJ_T0010717.1 MGP_C57BL6NJ_G0008802.1 mouse_genomes_project 2 180090878 180090999 + Gm26469 miRNA miRNA MGP_C57BL6NJ_T0004124.1 MGP_C57BL6NJ_G0003670.1 mouse_genomes_project 2 59442300 59455363 + Gm13546 antisense antisense MGP_C57BL6NJ_T0004125.1 MGP_C57BL6NJ_G0003670.1 mouse_genomes_project 2 59448036 59454637 + Gm13546 antisense antisense MGP_C57BL6NJ_T0004136.1 MGP_C57BL6NJ_G0003678.1 mouse_genomes_project 2 66948972 66949892 + Gm13594 antisense antisense MGP_C57BL6NJ_T0013992.1 MGP_C57BL6NJ_G0012037.1 mouse_genomes_project 2 96872006 96872339 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052993.1 MGP_C57BL6NJ_G0025761.1 mouse_genomes_project 2 9304531 9362648 + MGP_C57BL6NJ_P0052993 Il2ra protein_coding protein_coding MGP_C57BL6NJ_T0052994.1 MGP_C57BL6NJ_G0025761.1 mouse_genomes_project 2 9304573 9310505 + MGP_C57BL6NJ_P0052994 Il2ra protein_coding protein_coding MGP_C57BL6NJ_T0052995.1 MGP_C57BL6NJ_G0025761.1 mouse_genomes_project 2 9347309 9347811 + Il2ra protein_coding retained_intron MGP_C57BL6NJ_T0100192.1 MGP_C57BL6NJ_G0038238.1 mouse_genomes_project 2 56078029 56078170 + Gm25489 snRNA snRNA MGP_C57BL6NJ_T0058259.1 MGP_C57BL6NJ_G0026953.1 mouse_genomes_project 2 139224562 139241004 - MGP_C57BL6NJ_P0058259 Adra1d protein_coding protein_coding MGP_C57BL6NJ_T0001185.1 MGP_C57BL6NJ_G0001091.1 mouse_genomes_project 2 12880140 12882524 - TEC TEC MGP_C57BL6NJ_T0013883.1 MGP_C57BL6NJ_G0011928.1 mouse_genomes_project 2 60428804 60429329 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010665.1 MGP_C57BL6NJ_G0008750.1 mouse_genomes_project 2 97259606 97259681 + Mir7222 miRNA miRNA MGP_C57BL6NJ_T0010608.1 MGP_C57BL6NJ_G0008693.1 mouse_genomes_project 2 20964069 20964137 + Mir3967 miRNA miRNA MGP_C57BL6NJ_T0001228.1 MGP_C57BL6NJ_G0001133.1 mouse_genomes_project 2 136726203 136728146 - TEC TEC MGP_C57BL6NJ_T0004315.1 MGP_C57BL6NJ_G0003805.1 mouse_genomes_project 2 175643311 175647869 + Gm14397 antisense antisense MGP_C57BL6NJ_T0056242.1 MGP_C57BL6NJ_G0026417.1 mouse_genomes_project 2 91066181 91067120 - MGP_C57BL6NJ_P0056242 Olfr1111 protein_coding protein_coding MGP_C57BL6NJ_T0004263.1 MGP_C57BL6NJ_G0003764.1 mouse_genomes_project 2 152589791 152599436 - Banf2os antisense antisense MGP_C57BL6NJ_T0004264.1 MGP_C57BL6NJ_G0003764.1 mouse_genomes_project 2 152590218 152599413 - Banf2os antisense antisense MGP_C57BL6NJ_T0004318.1 MGP_C57BL6NJ_G0003808.1 mouse_genomes_project 2 177648903 177649673 + Gm17096 antisense antisense MGP_C57BL6NJ_T0058893.1 MGP_C57BL6NJ_G0027133.1 mouse_genomes_project 2 163508047 163513891 + MGP_C57BL6NJ_P0058893 Bpifa5 protein_coding protein_coding MGP_C57BL6NJ_T0059613.1 MGP_C57BL6NJ_G0027294.1 mouse_genomes_project 2 175198354 175201364 + MGP_C57BL6NJ_P0059613 Ube2c protein_coding protein_coding MGP_C57BL6NJ_T0059614.1 MGP_C57BL6NJ_G0027294.1 mouse_genomes_project 2 175198359 175207143 + MGP_C57BL6NJ_P0059614 Ube2c protein_coding protein_coding MGP_C57BL6NJ_T0055654.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72896983 73013740 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055655.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72896983 73014071 - MGP_C57BL6NJ_P0055655 Tlk1 protein_coding protein_coding MGP_C57BL6NJ_T0055656.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72898717 72902801 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055657.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72900888 72902481 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055658.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72931346 73013666 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055659.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72934582 73013654 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0055660.1 MGP_C57BL6NJ_G0026235.1 mouse_genomes_project 2 72936341 73013571 - Tlk1 protein_coding processed_transcript MGP_C57BL6NJ_T0013914.1 MGP_C57BL6NJ_G0011959.1 mouse_genomes_project 2 72800088 72800337 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007528.1 MGP_C57BL6NJ_G0006171.1 mouse_genomes_project 2 159731079 159733561 - Gm26681 lincRNA lincRNA MGP_C57BL6NJ_T0007478.1 MGP_C57BL6NJ_G0006130.1 mouse_genomes_project 2 124438032 124439570 - Gm28183 lincRNA lincRNA MGP_C57BL6NJ_T0056209.1 MGP_C57BL6NJ_G0026387.1 mouse_genomes_project 2 90031191 90032232 - MGP_C57BL6NJ_P0056209 Olfr1055 protein_coding protein_coding MGP_C57BL6NJ_T0056210.1 MGP_C57BL6NJ_G0026387.1 mouse_genomes_project 2 90031293 90032232 - MGP_C57BL6NJ_P0056210 Olfr1055 protein_coding protein_coding MGP_C57BL6NJ_T0056167.1 MGP_C57BL6NJ_G0026347.1 mouse_genomes_project 2 89074045 89074990 - MGP_C57BL6NJ_P0056167 Olfr1000 protein_coding protein_coding MGP_C57BL6NJ_T0013889.1 MGP_C57BL6NJ_G0011934.1 mouse_genomes_project 2 61619794 61620462 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014213.1 MGP_C57BL6NJ_G0012258.1 mouse_genomes_project 2 191880434 191880831 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059617.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175215735 175222385 + MGP_C57BL6NJ_P0059617 Snx21 protein_coding protein_coding MGP_C57BL6NJ_T0059618.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175215903 175223708 + MGP_C57BL6NJ_P0059618 Snx21 protein_coding protein_coding MGP_C57BL6NJ_T0059619.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175215903 175222950 + MGP_C57BL6NJ_P0059619 Snx21 protein_coding protein_coding MGP_C57BL6NJ_T0059620.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175215929 175217545 + MGP_C57BL6NJ_P0059620 Snx21 protein_coding protein_coding MGP_C57BL6NJ_T0059621.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175216706 175222522 + MGP_C57BL6NJ_P0059621 Snx21 protein_coding protein_coding MGP_C57BL6NJ_T0059622.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175220308 175223714 + Snx21 protein_coding retained_intron MGP_C57BL6NJ_T0059623.1 MGP_C57BL6NJ_G0027296.1 mouse_genomes_project 2 175221549 175223706 + Snx21 protein_coding processed_transcript MGP_C57BL6NJ_T0053670.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24270507 24272446 - MGP_C57BL6NJ_P0053670 Tmem141 protein_coding protein_coding MGP_C57BL6NJ_T0053671.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24270507 24272426 - MGP_C57BL6NJ_P0053671 Tmem141 protein_coding protein_coding MGP_C57BL6NJ_T0053672.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24270544 24272404 - Tmem141 protein_coding processed_transcript MGP_C57BL6NJ_T0053673.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24270767 24272221 - Tmem141 protein_coding processed_transcript MGP_C57BL6NJ_T0053674.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24271487 24272412 - Tmem141 protein_coding processed_transcript MGP_C57BL6NJ_T0053675.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24271487 24272409 - Tmem141 protein_coding processed_transcript MGP_C57BL6NJ_T0053676.1 MGP_C57BL6NJ_G0025877.1 mouse_genomes_project 2 24271934 24272348 - Tmem141 protein_coding processed_transcript MGP_C57BL6NJ_T0058013.1 MGP_C57BL6NJ_G0026898.1 mouse_genomes_project 2 136362887 136398403 + MGP_C57BL6NJ_P0058013 Fbln7 protein_coding protein_coding MGP_C57BL6NJ_T0058014.1 MGP_C57BL6NJ_G0026898.1 mouse_genomes_project 2 136363838 136398399 + MGP_C57BL6NJ_P0058014 Fbln7 protein_coding protein_coding MGP_C57BL6NJ_T0052952.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7930071 8006378 + MGP_C57BL6NJ_P0052952 Sfmbt2 protein_coding protein_coding MGP_C57BL6NJ_T0052953.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7930072 8006378 + MGP_C57BL6NJ_P0052953 Sfmbt2 protein_coding protein_coding MGP_C57BL6NJ_T0052954.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7930079 7969531 + Sfmbt2 protein_coding processed_transcript MGP_C57BL6NJ_T0052955.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7932748 8006378 + MGP_C57BL6NJ_P0052955 Sfmbt2 protein_coding protein_coding MGP_C57BL6NJ_T0052956.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7932748 8155290 + MGP_C57BL6NJ_P0052956 Sfmbt2 protein_coding protein_coding MGP_C57BL6NJ_T0052957.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7932760 7956361 + Sfmbt2 protein_coding processed_transcript MGP_C57BL6NJ_T0052958.1 MGP_C57BL6NJ_G0025756.1 mouse_genomes_project 2 7932762 8155302 + MGP_C57BL6NJ_P0052958 Sfmbt2 protein_coding protein_coding MGP_C57BL6NJ_T0058007.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136303744 136347905 + MGP_C57BL6NJ_P0058007 Tmem87b protein_coding protein_coding MGP_C57BL6NJ_T0058008.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136303965 136347908 + MGP_C57BL6NJ_P0058008 Tmem87b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0058009.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136304010 136345436 + MGP_C57BL6NJ_P0058009 Tmem87b protein_coding protein_coding MGP_C57BL6NJ_T0058010.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136325266 136343960 + Tmem87b protein_coding processed_transcript MGP_C57BL6NJ_T0058011.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136334797 136343369 + Tmem87b protein_coding retained_intron MGP_C57BL6NJ_T0058012.1 MGP_C57BL6NJ_G0026897.1 mouse_genomes_project 2 136343603 136345055 + Tmem87b protein_coding processed_transcript MGP_C57BL6NJ_T0060042.1 MGP_C57BL6NJ_G0027388.1 mouse_genomes_project 2 185879812 185897692 - MGP_C57BL6NJ_P0060042 Gm20721 protein_coding protein_coding MGP_C57BL6NJ_T0060164.1 MGP_C57BL6NJ_G0027420.1 mouse_genomes_project 2 192556640 192577330 - MGP_C57BL6NJ_P0060164 Tcfl5 protein_coding protein_coding MGP_C57BL6NJ_T0060165.1 MGP_C57BL6NJ_G0027420.1 mouse_genomes_project 2 192557276 192576916 - MGP_C57BL6NJ_P0060165 Tcfl5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060166.1 MGP_C57BL6NJ_G0027420.1 mouse_genomes_project 2 192569952 192577245 - MGP_C57BL6NJ_P0060166 Tcfl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060167.1 MGP_C57BL6NJ_G0027420.1 mouse_genomes_project 2 192572164 192577046 - Tcfl5 protein_coding retained_intron MGP_C57BL6NJ_T0010613.1 MGP_C57BL6NJ_G0008698.1 mouse_genomes_project 2 24077591 24077647 + Mir3087 miRNA miRNA MGP_C57BL6NJ_T0059635.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175271910 175281547 + MGP_C57BL6NJ_P0059635 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059636.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175271924 175272797 + Ctsa protein_coding processed_transcript MGP_C57BL6NJ_T0059637.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175271946 175273100 + MGP_C57BL6NJ_P0059637 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059638.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175271963 175272817 + Ctsa protein_coding processed_transcript MGP_C57BL6NJ_T0059639.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175271963 175274729 + MGP_C57BL6NJ_P0059639 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059640.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175272834 175281117 + MGP_C57BL6NJ_P0059640 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059641.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175272844 175273459 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0059642.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175272852 175278151 + MGP_C57BL6NJ_P0059642 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059643.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175272884 175273912 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0059644.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175272895 175277626 + MGP_C57BL6NJ_P0059644 Ctsa protein_coding protein_coding MGP_C57BL6NJ_T0059645.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175273067 175274231 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0059646.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175273067 175278184 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0059647.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175273110 175277621 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0059648.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175273347 175274759 + Ctsa protein_coding processed_transcript MGP_C57BL6NJ_T0059649.1 MGP_C57BL6NJ_G0027302.1 mouse_genomes_project 2 175273510 175274507 + Ctsa protein_coding retained_intron MGP_C57BL6NJ_T0057058.1 MGP_C57BL6NJ_G0026662.1 mouse_genomes_project 2 115723903 115729125 - MGP_C57BL6NJ_P0057058 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0056487.1 MGP_C57BL6NJ_G0026562.1 mouse_genomes_project 2 95635752 95673403 + MGP_C57BL6NJ_P0056487 Spi1 protein_coding protein_coding MGP_C57BL6NJ_T0056488.1 MGP_C57BL6NJ_G0026562.1 mouse_genomes_project 2 95635770 95645233 + Spi1 protein_coding processed_transcript MGP_C57BL6NJ_T0056489.1 MGP_C57BL6NJ_G0026562.1 mouse_genomes_project 2 95651018 95674793 + MGP_C57BL6NJ_P0056489 Spi1 protein_coding protein_coding MGP_C57BL6NJ_T0056490.1 MGP_C57BL6NJ_G0026562.1 mouse_genomes_project 2 95651702 95672352 + MGP_C57BL6NJ_P0056490 Spi1 protein_coding protein_coding MGP_C57BL6NJ_T0056053.1 MGP_C57BL6NJ_G0026315.1 mouse_genomes_project 2 87629356 87741227 - MGP_C57BL6NJ_P0056053 Calcrl protein_coding protein_coding MGP_C57BL6NJ_T0056054.1 MGP_C57BL6NJ_G0026315.1 mouse_genomes_project 2 87629389 87676670 - MGP_C57BL6NJ_P0056054 Calcrl protein_coding protein_coding MGP_C57BL6NJ_T0056055.1 MGP_C57BL6NJ_G0026315.1 mouse_genomes_project 2 87676606 87741082 - Calcrl protein_coding processed_transcript MGP_C57BL6NJ_T0053830.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25337416 25349826 + MGP_C57BL6NJ_P0053830 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053831.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25338458 25353126 + MGP_C57BL6NJ_P0053831 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053832.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25341266 25353123 + MGP_C57BL6NJ_P0053832 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053833.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25341282 25353124 + MGP_C57BL6NJ_P0053833 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053834.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25341307 25353562 + MGP_C57BL6NJ_P0053834 Egfl7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053835.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25347071 25353123 + MGP_C57BL6NJ_P0053835 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053837.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25347102 25351350 + Egfl7 protein_coding processed_transcript MGP_C57BL6NJ_T0053838.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25347113 25351381 + MGP_C57BL6NJ_P0053838 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053839.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25347130 25350931 + MGP_C57BL6NJ_P0053839 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053840.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25348984 25352885 + MGP_C57BL6NJ_P0053840 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053841.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25349776 25352005 + Egfl7 protein_coding retained_intron MGP_C57BL6NJ_T0053842.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25350961 25351414 + Egfl7 protein_coding retained_intron MGP_C57BL6NJ_T0053843.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25351406 25353118 + MGP_C57BL6NJ_P0053843 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053844.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25351470 25353124 + MGP_C57BL6NJ_P0053844 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053845.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25351875 25353124 + MGP_C57BL6NJ_P0053845 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053846.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25351876 25353124 + MGP_C57BL6NJ_P0053846 Egfl7 protein_coding protein_coding MGP_C57BL6NJ_T0053847.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25351887 25352732 + Egfl7 protein_coding retained_intron MGP_C57BL6NJ_T0053848.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25352464 25353123 + Egfl7 protein_coding processed_transcript MGP_C57BL6NJ_T0053849.1 MGP_C57BL6NJ_G0025908.1 mouse_genomes_project 2 25352588 25353124 + Egfl7 protein_coding retained_intron MGP_C57BL6NJ_T0057951.1 MGP_C57BL6NJ_G0026883.1 mouse_genomes_project 2 134923089 134938052 - MGP_C57BL6NJ_P0057951 Prom2 protein_coding protein_coding MGP_C57BL6NJ_T0057952.1 MGP_C57BL6NJ_G0026883.1 mouse_genomes_project 2 134923571 134937970 - MGP_C57BL6NJ_P0057952 Prom2 protein_coding protein_coding MGP_C57BL6NJ_T0057953.1 MGP_C57BL6NJ_G0026883.1 mouse_genomes_project 2 134931350 134931782 - Prom2 protein_coding processed_transcript MGP_C57BL6NJ_T0057954.1 MGP_C57BL6NJ_G0026883.1 mouse_genomes_project 2 134936823 134937999 - Prom2 protein_coding retained_intron MGP_C57BL6NJ_T0059744.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176340166 176445644 - MGP_C57BL6NJ_P0059744 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059745.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176340168 176458429 - MGP_C57BL6NJ_P0059745 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059746.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176340168 176426524 - MGP_C57BL6NJ_P0059746 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059747.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176340171 176453769 - MGP_C57BL6NJ_P0059747 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059748.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176340171 176453769 - MGP_C57BL6NJ_P0059748 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059749.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176341298 176458450 - MGP_C57BL6NJ_P0059749 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059750.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176341325 176458326 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059751.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176341325 176448352 - MGP_C57BL6NJ_P0059751 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059752.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176392273 176445692 - MGP_C57BL6NJ_P0059752 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059753.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176392326 176472771 - MGP_C57BL6NJ_P0059753 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059754.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176399927 176426524 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059755.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176408393 176474513 - MGP_C57BL6NJ_P0059755 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059756.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176411133 176430356 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059757.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176414094 176420473 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059758.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176420383 176446515 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059759.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176420383 176446323 - MGP_C57BL6NJ_P0059759 Zmynd8 protein_coding protein_coding MGP_C57BL6NJ_T0059760.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176420384 176451372 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059761.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176442941 176457888 - Zmynd8 protein_coding processed_transcript MGP_C57BL6NJ_T0059762.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176444791 176457917 - Zmynd8 protein_coding retained_intron MGP_C57BL6NJ_T0059763.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176445069 176446105 - Zmynd8 protein_coding retained_intron MGP_C57BL6NJ_T0059764.1 MGP_C57BL6NJ_G0027321.1 mouse_genomes_project 2 176445171 176458429 - Zmynd8 protein_coding retained_intron MGP_C57BL6NJ_T0056388.1 MGP_C57BL6NJ_G0026535.1 mouse_genomes_project 2 94293262 94298849 - MGP_C57BL6NJ_P0056388 Olfr1259 protein_coding protein_coding MGP_C57BL6NJ_T0004271.1 MGP_C57BL6NJ_G0003771.1 mouse_genomes_project 2 156072778 156073647 - AI646519 antisense antisense MGP_C57BL6NJ_T0013775.1 MGP_C57BL6NJ_G0011820.1 mouse_genomes_project 2 18211731 18213162 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0055090.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44905700 45109300 - MGP_C57BL6NJ_P0055090 Gtdc1 protein_coding protein_coding MGP_C57BL6NJ_T0055091.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44905702 45237130 - MGP_C57BL6NJ_P0055091 Gtdc1 protein_coding protein_coding MGP_C57BL6NJ_T0055092.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44906418 44913516 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055093.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44912538 44913883 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055094.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44917646 45306297 - MGP_C57BL6NJ_P0055094 Gtdc1 protein_coding protein_coding MGP_C57BL6NJ_T0055095.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44981198 45306400 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055096.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 44983333 45306793 - MGP_C57BL6NJ_P0055096 Gtdc1 protein_coding protein_coding MGP_C57BL6NJ_T0055097.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 45104757 45195882 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055098.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 45152139 45306372 - MGP_C57BL6NJ_P0055098 Gtdc1 protein_coding protein_coding MGP_C57BL6NJ_T0055099.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 45155580 45306370 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0055100.1 MGP_C57BL6NJ_G0026134.1 mouse_genomes_project 2 45158168 45306285 - Gtdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0013919.1 MGP_C57BL6NJ_G0011964.1 mouse_genomes_project 2 74923290 74923691 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013932.1 MGP_C57BL6NJ_G0011977.1 mouse_genomes_project 2 79967571 79968004 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013884.1 MGP_C57BL6NJ_G0011929.1 mouse_genomes_project 2 60689944 60690374 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060240.1 MGP_C57BL6NJ_G0027432.1 mouse_genomes_project 2 193142753 193152115 - MGP_C57BL6NJ_P0060240 Eef1a2 protein_coding protein_coding MGP_C57BL6NJ_T0013726.1 MGP_C57BL6NJ_G0011771.1 mouse_genomes_project 2 678955 679744 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013897.1 MGP_C57BL6NJ_G0011942.1 mouse_genomes_project 2 64205198 64206786 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004147.1 MGP_C57BL6NJ_G0003689.1 mouse_genomes_project 2 72656862 72738740 - Gad1os antisense antisense MGP_C57BL6NJ_T0004148.1 MGP_C57BL6NJ_G0003689.1 mouse_genomes_project 2 72657166 72658391 - Gad1os antisense antisense MGP_C57BL6NJ_T0055370.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 61981164 62059724 - MGP_C57BL6NJ_P0055370 Itgb6 protein_coding protein_coding MGP_C57BL6NJ_T0055371.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 61983103 62109700 - MGP_C57BL6NJ_P0055371 Itgb6 protein_coding protein_coding MGP_C57BL6NJ_T0055372.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 61987117 62109700 - MGP_C57BL6NJ_P0055372 Itgb6 protein_coding protein_coding MGP_C57BL6NJ_T0055373.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 61988011 62059739 - MGP_C57BL6NJ_P0055373 Itgb6 protein_coding protein_coding MGP_C57BL6NJ_T0055374.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 62021785 62059706 - Itgb6 protein_coding processed_transcript MGP_C57BL6NJ_T0055375.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 62040396 62059767 - Itgb6 protein_coding processed_transcript MGP_C57BL6NJ_T0055376.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 62055262 62059716 - Itgb6 protein_coding processed_transcript MGP_C57BL6NJ_T0055377.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 62060650 62092705 - Itgb6 protein_coding processed_transcript MGP_C57BL6NJ_T0055378.1 MGP_C57BL6NJ_G0026181.1 mouse_genomes_project 2 62080532 62092682 - Itgb6 protein_coding processed_transcript MGP_C57BL6NJ_T0011773.1 MGP_C57BL6NJ_G0009858.1 mouse_genomes_project 2 133605122 133605414 - Gm24739 misc_RNA misc_RNA MGP_C57BL6NJ_T0004145.1 MGP_C57BL6NJ_G0003687.1 mouse_genomes_project 2 71286217 71310165 + Gm13613 antisense antisense MGP_C57BL6NJ_T0056683.1 MGP_C57BL6NJ_G0026587.1 mouse_genomes_project 2 97028483 97029549 + 1700029I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0056684.1 MGP_C57BL6NJ_G0026587.1 mouse_genomes_project 2 97028863 97029549 + MGP_C57BL6NJ_P0056684 1700029I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0056685.1 MGP_C57BL6NJ_G0026587.1 mouse_genomes_project 2 97028863 97031654 + MGP_C57BL6NJ_P0056685 1700029I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0056686.1 MGP_C57BL6NJ_G0026587.1 mouse_genomes_project 2 97028863 97029535 + MGP_C57BL6NJ_P0056686 1700029I15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056018.1 MGP_C57BL6NJ_G0026306.1 mouse_genomes_project 2 83597821 83644777 + Nup35 protein_coding retained_intron MGP_C57BL6NJ_T0056020.1 MGP_C57BL6NJ_G0026306.1 mouse_genomes_project 2 83619874 83644773 + MGP_C57BL6NJ_P0056020 Nup35 protein_coding protein_coding MGP_C57BL6NJ_T0056021.1 MGP_C57BL6NJ_G0026306.1 mouse_genomes_project 2 83619890 83641875 + MGP_C57BL6NJ_P0056021 Nup35 protein_coding protein_coding MGP_C57BL6NJ_T0056022.1 MGP_C57BL6NJ_G0026306.1 mouse_genomes_project 2 83620322 83629075 + Nup35 protein_coding processed_transcript MGP_C57BL6NJ_T0056023.1 MGP_C57BL6NJ_G0026306.1 mouse_genomes_project 2 83626814 83639261 + Nup35 protein_coding processed_transcript MGP_C57BL6NJ_T0060257.1 MGP_C57BL6NJ_G0027438.1 mouse_genomes_project 2 193249061 193293736 - MGP_C57BL6NJ_P0060257 Gmeb2 protein_coding protein_coding MGP_C57BL6NJ_T0060258.1 MGP_C57BL6NJ_G0027438.1 mouse_genomes_project 2 193251397 193280137 - MGP_C57BL6NJ_P0060258 Gmeb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060259.1 MGP_C57BL6NJ_G0027438.1 mouse_genomes_project 2 193252387 193253744 - Gmeb2 protein_coding retained_intron MGP_C57BL6NJ_T0060260.1 MGP_C57BL6NJ_G0027438.1 mouse_genomes_project 2 193253530 193291937 - MGP_C57BL6NJ_P0060260 Gmeb2 protein_coding protein_coding MGP_C57BL6NJ_T0054836.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34703494 34780642 + MGP_C57BL6NJ_P0054836 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054837.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34703494 34781354 + MGP_C57BL6NJ_P0054837 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054838.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34703494 34724891 + MGP_C57BL6NJ_P0054838 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054839.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34703621 34780954 + MGP_C57BL6NJ_P0054839 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054840.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34720961 34743573 + MGP_C57BL6NJ_P0054840 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054841.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34726397 34781354 + MGP_C57BL6NJ_P0054841 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054842.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34726397 34756538 + MGP_C57BL6NJ_P0054842 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054843.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34726421 34733587 + MGP_C57BL6NJ_P0054843 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054844.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34726421 34743573 + MGP_C57BL6NJ_P0054844 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054845.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34740997 34743573 + MGP_C57BL6NJ_P0054845 Cntrl protein_coding protein_coding MGP_C57BL6NJ_T0054846.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34756209 34768327 + MGP_C57BL6NJ_P0054846 Cntrl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054847.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34764271 34768755 + Cntrl protein_coding retained_intron MGP_C57BL6NJ_T0054848.1 MGP_C57BL6NJ_G0026067.1 mouse_genomes_project 2 34777779 34781343 + Cntrl protein_coding retained_intron MGP_C57BL6NJ_T0014036.1 MGP_C57BL6NJ_G0012081.1 mouse_genomes_project 2 112702610 112703215 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056216.1 MGP_C57BL6NJ_G0026393.1 mouse_genomes_project 2 90287426 90288374 - MGP_C57BL6NJ_P0056216 Olfr1079 protein_coding protein_coding MGP_C57BL6NJ_T0056217.1 MGP_C57BL6NJ_G0026393.1 mouse_genomes_project 2 90287426 90291941 - MGP_C57BL6NJ_P0056217 Olfr1079 protein_coding protein_coding MGP_C57BL6NJ_T0007364.1 MGP_C57BL6NJ_G0006037.1 mouse_genomes_project 2 46169075 46189997 + Gm13465 lincRNA lincRNA MGP_C57BL6NJ_T0018246.1 MGP_C57BL6NJ_G0015816.1 mouse_genomes_project 2 68219438 68232512 + Gm13630 processed_transcript processed_transcript MGP_C57BL6NJ_T0059996.1 MGP_C57BL6NJ_G0027377.1 mouse_genomes_project 2 184574655 184580749 + MGP_C57BL6NJ_P0059996 Pck1 protein_coding protein_coding MGP_C57BL6NJ_T0059997.1 MGP_C57BL6NJ_G0027377.1 mouse_genomes_project 2 184574680 184576417 + Pck1 protein_coding processed_transcript MGP_C57BL6NJ_T0059998.1 MGP_C57BL6NJ_G0027377.1 mouse_genomes_project 2 184574680 184576067 + Pck1 protein_coding retained_intron MGP_C57BL6NJ_T0059999.1 MGP_C57BL6NJ_G0027377.1 mouse_genomes_project 2 184574689 184580747 + Pck1 protein_coding retained_intron MGP_C57BL6NJ_T0055840.1 MGP_C57BL6NJ_G0026272.1 mouse_genomes_project 2 77277581 77300688 + MGP_C57BL6NJ_P0055840 Gm28230 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007444.1 MGP_C57BL6NJ_G0006104.1 mouse_genomes_project 2 104524177 104524661 - Gm29235 lincRNA lincRNA MGP_C57BL6NJ_T0004112.1 MGP_C57BL6NJ_G0003660.1 mouse_genomes_project 2 35484852 35489048 + 9030204H09Rik antisense antisense MGP_C57BL6NJ_T0053043.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050623 10136634 - Fam188a protein_coding processed_transcript MGP_C57BL6NJ_T0053044.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050623 10136656 - MGP_C57BL6NJ_P0053044 Fam188a protein_coding protein_coding MGP_C57BL6NJ_T0053045.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050623 10136621 - MGP_C57BL6NJ_P0053045 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053046.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050623 10136634 - MGP_C57BL6NJ_P0053046 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053047.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050623 10136630 - MGP_C57BL6NJ_P0053047 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053048.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050626 10136638 - MGP_C57BL6NJ_P0053048 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053049.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10050992 10060272 - MGP_C57BL6NJ_P0053049 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053050.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10051278 10107594 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053051.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10051326 10136474 - Fam188a protein_coding processed_transcript MGP_C57BL6NJ_T0053052.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10054290 10136596 - MGP_C57BL6NJ_P0053052 Fam188a protein_coding protein_coding MGP_C57BL6NJ_T0053053.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10060145 10136617 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053054.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10068814 10070659 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053055.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10068983 10136635 - MGP_C57BL6NJ_P0053055 Fam188a protein_coding protein_coding MGP_C57BL6NJ_T0053056.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10095780 10096616 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053057.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10096481 10119770 - MGP_C57BL6NJ_P0053057 Fam188a protein_coding protein_coding MGP_C57BL6NJ_T0053058.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10109367 10136627 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053059.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10109752 10119909 - Fam188a protein_coding retained_intron MGP_C57BL6NJ_T0053060.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10110767 10136577 - MGP_C57BL6NJ_P0053060 Fam188a protein_coding protein_coding MGP_C57BL6NJ_T0053061.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10110778 10136435 - MGP_C57BL6NJ_P0053061 Fam188a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0053062.1 MGP_C57BL6NJ_G0025766.1 mouse_genomes_project 2 10113706 10114438 - Fam188a protein_coding processed_transcript MGP_C57BL6NJ_T0056951.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110286484 110314848 - Tcp11l1 protein_coding processed_transcript MGP_C57BL6NJ_T0056954.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110308598 110342833 - MGP_C57BL6NJ_P0056954 Tcp11l1 protein_coding protein_coding MGP_C57BL6NJ_T0056955.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110310561 110342839 - MGP_C57BL6NJ_P0056955 Tcp11l1 protein_coding protein_coding MGP_C57BL6NJ_T0056956.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110315361 110342846 - Tcp11l1 protein_coding retained_intron MGP_C57BL6NJ_T0056957.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110325251 110337143 - Tcp11l1 protein_coding processed_transcript MGP_C57BL6NJ_T0056958.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110329730 110342770 - Tcp11l1 protein_coding processed_transcript MGP_C57BL6NJ_T0056959.1 MGP_C57BL6NJ_G0026640.1 mouse_genomes_project 2 110335625 110342843 - Tcp11l1 protein_coding processed_transcript MGP_C57BL6NJ_T0059540.1 MGP_C57BL6NJ_G0027263.1 mouse_genomes_project 2 174525286 174526554 - MGP_C57BL6NJ_P0059540 Wfdc15a protein_coding protein_coding MGP_C57BL6NJ_T0059550.1 MGP_C57BL6NJ_G0027269.1 mouse_genomes_project 2 174653150 174656584 + MGP_C57BL6NJ_P0059550 Svs6 protein_coding protein_coding MGP_C57BL6NJ_T0101531.1 MGP_C57BL6NJ_G0039577.1 mouse_genomes_project 2 160058171 160058300 + Gm22187 snoRNA snoRNA MGP_C57BL6NJ_T0018209.1 MGP_C57BL6NJ_G0015794.1 mouse_genomes_project 2 25084650 25103958 + Gm13562 processed_transcript processed_transcript MGP_C57BL6NJ_T0018210.1 MGP_C57BL6NJ_G0015794.1 mouse_genomes_project 2 25097502 25101769 + Gm13562 processed_transcript processed_transcript MGP_C57BL6NJ_T0103056.1 MGP_C57BL6NJ_G0040850.1 mouse_genomes_project 2 147006560 147007145 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010597.1 MGP_C57BL6NJ_G0008682.1 mouse_genomes_project 2 8071733 8071835 + Mir297a-3 miRNA miRNA MGP_C57BL6NJ_T0007482.1 MGP_C57BL6NJ_G0006134.1 mouse_genomes_project 2 124946047 124951984 - A930104D05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007483.1 MGP_C57BL6NJ_G0006134.1 mouse_genomes_project 2 124948834 124951816 - A930104D05Rik lincRNA lincRNA MGP_C57BL6NJ_T0057423.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126899724 126908273 + Pla2g4b protein_coding retained_intron MGP_C57BL6NJ_T0057424.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126899740 126909338 + Pla2g4b protein_coding retained_intron MGP_C57BL6NJ_T0057425.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126899740 126908272 + MGP_C57BL6NJ_P0057425 Pla2g4b protein_coding protein_coding MGP_C57BL6NJ_T0057426.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126900850 126902437 + Pla2g4b protein_coding retained_intron MGP_C57BL6NJ_T0057427.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126905174 126906756 + Pla2g4b protein_coding retained_intron MGP_C57BL6NJ_T0057428.1 MGP_C57BL6NJ_G0026779.1 mouse_genomes_project 2 126907277 126907998 + Pla2g4b protein_coding retained_intron MGP_C57BL6NJ_T0054475.1 MGP_C57BL6NJ_G0026015.1 mouse_genomes_project 2 31459258 31475855 + MGP_C57BL6NJ_P0054475 Plpp7 protein_coding protein_coding MGP_C57BL6NJ_T0054476.1 MGP_C57BL6NJ_G0026015.1 mouse_genomes_project 2 31459295 31475161 + MGP_C57BL6NJ_P0054476 Plpp7 protein_coding protein_coding MGP_C57BL6NJ_T0054477.1 MGP_C57BL6NJ_G0026015.1 mouse_genomes_project 2 31459885 31475843 + MGP_C57BL6NJ_P0054477 Plpp7 protein_coding protein_coding MGP_C57BL6NJ_T0004057.1 MGP_C57BL6NJ_G0003618.1 mouse_genomes_project 2 17633148 17636028 - Gm13344 antisense antisense MGP_C57BL6NJ_T0098857.1 MGP_C57BL6NJ_G0036921.1 mouse_genomes_project 2 21228537 21228953 - pseudogene pseudogene MGP_C57BL6NJ_T0054923.1 MGP_C57BL6NJ_G0026082.1 mouse_genomes_project 2 36040696 36041617 + MGP_C57BL6NJ_P0054923 Olfr338 protein_coding protein_coding MGP_C57BL6NJ_T0054213.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330224 29335201 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0054214.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330224 29335214 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0054215.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330239 29334277 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0054216.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330242 29334756 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0054217.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330242 29335222 - MGP_C57BL6NJ_P0054217 D2Wsu81e protein_coding protein_coding MGP_C57BL6NJ_T0054218.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29330244 29335231 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0054219.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29331702 29334737 - D2Wsu81e protein_coding processed_transcript MGP_C57BL6NJ_T0054220.1 MGP_C57BL6NJ_G0025976.1 mouse_genomes_project 2 29333134 29335227 - D2Wsu81e protein_coding retained_intron MGP_C57BL6NJ_T0056270.1 MGP_C57BL6NJ_G0026438.1 mouse_genomes_project 2 91657870 91661954 - MGP_C57BL6NJ_P0056270 Gm13741 protein_coding protein_coding MGP_C57BL6NJ_T0056272.1 MGP_C57BL6NJ_G0026438.1 mouse_genomes_project 2 91658456 91661954 - Gm13741 protein_coding processed_transcript MGP_C57BL6NJ_T0103017.1 MGP_C57BL6NJ_G0040811.1 mouse_genomes_project 2 89702953 89703908 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0058868.1 MGP_C57BL6NJ_G0027124.1 mouse_genomes_project 2 163186628 163202542 - MGP_C57BL6NJ_P0058868 Sun5 protein_coding protein_coding MGP_C57BL6NJ_T0058869.1 MGP_C57BL6NJ_G0027124.1 mouse_genomes_project 2 163191051 163202542 - Sun5 protein_coding processed_transcript MGP_C57BL6NJ_T0058870.1 MGP_C57BL6NJ_G0027124.1 mouse_genomes_project 2 163196856 163202542 - Sun5 protein_coding processed_transcript MGP_C57BL6NJ_T0007561.1 MGP_C57BL6NJ_G0006201.1 mouse_genomes_project 2 177024024 177042493 - Gm14268 lincRNA lincRNA MGP_C57BL6NJ_T0007562.1 MGP_C57BL6NJ_G0006201.1 mouse_genomes_project 2 177024310 177042523 - Gm14268 lincRNA lincRNA MGP_C57BL6NJ_T0057071.1 MGP_C57BL6NJ_G0026666.1 mouse_genomes_project 2 116282609 116331074 - MGP_C57BL6NJ_P0057071 Bbox1 protein_coding protein_coding MGP_C57BL6NJ_T0057072.1 MGP_C57BL6NJ_G0026666.1 mouse_genomes_project 2 116316892 116339521 - MGP_C57BL6NJ_P0057072 Bbox1 protein_coding protein_coding MGP_C57BL6NJ_T0007492.1 MGP_C57BL6NJ_G0006142.1 mouse_genomes_project 2 135634325 135650776 + Gm14009 lincRNA lincRNA MGP_C57BL6NJ_T0010693.1 MGP_C57BL6NJ_G0008778.1 mouse_genomes_project 2 138942909 138942995 + Mir103-2 miRNA miRNA MGP_C57BL6NJ_T0055630.1 MGP_C57BL6NJ_G0026229.1 mouse_genomes_project 2 72169578 72591517 + MGP_C57BL6NJ_P0055630 Myo3b protein_coding protein_coding MGP_C57BL6NJ_T0055631.1 MGP_C57BL6NJ_G0026229.1 mouse_genomes_project 2 72218027 72591520 + MGP_C57BL6NJ_P0055631 Myo3b protein_coding protein_coding MGP_C57BL6NJ_T0055632.1 MGP_C57BL6NJ_G0026229.1 mouse_genomes_project 2 72231153 72331284 + MGP_C57BL6NJ_P0055632 Myo3b protein_coding protein_coding MGP_C57BL6NJ_T0014196.1 MGP_C57BL6NJ_G0012241.1 mouse_genomes_project 2 178397739 178398215 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056986.1 MGP_C57BL6NJ_G0026650.1 mouse_genomes_project 2 111074300 111087329 - MGP_C57BL6NJ_P0056986 Rcn1 protein_coding protein_coding MGP_C57BL6NJ_T0056987.1 MGP_C57BL6NJ_G0026650.1 mouse_genomes_project 2 111074938 111083358 - Rcn1 protein_coding retained_intron MGP_C57BL6NJ_T0010631.1 MGP_C57BL6NJ_G0008716.1 mouse_genomes_project 2 31708162 31708272 + Mir199b miRNA miRNA MGP_C57BL6NJ_T0101543.1 MGP_C57BL6NJ_G0039589.1 mouse_genomes_project 2 171112239 171112364 + Gm25561 snoRNA snoRNA MGP_C57BL6NJ_T0057041.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115250222 115317673 + MGP_C57BL6NJ_P0057041 Kif18a protein_coding protein_coding MGP_C57BL6NJ_T0057042.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115250310 115265586 + Kif18a protein_coding retained_intron MGP_C57BL6NJ_T0057043.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115250324 115277087 + Kif18a protein_coding retained_intron MGP_C57BL6NJ_T0057044.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115250336 115280420 + Kif18a protein_coding retained_intron MGP_C57BL6NJ_T0057045.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115250353 115265318 + Kif18a protein_coding retained_intron MGP_C57BL6NJ_T0057046.1 MGP_C57BL6NJ_G0026660.1 mouse_genomes_project 2 115261548 115265586 + Kif18a protein_coding retained_intron MGP_C57BL6NJ_T0056325.1 MGP_C57BL6NJ_G0026488.1 mouse_genomes_project 2 93084563 93085487 + MGP_C57BL6NJ_P0056325 Olfr1205 protein_coding protein_coding MGP_C57BL6NJ_T0101465.1 MGP_C57BL6NJ_G0039511.1 mouse_genomes_project 2 18179429 18179520 + Gm25859 snoRNA snoRNA MGP_C57BL6NJ_T0058532.1 MGP_C57BL6NJ_G0027017.1 mouse_genomes_project 2 154522780 154540160 - MGP_C57BL6NJ_P0058532 Crnkl1 protein_coding protein_coding MGP_C57BL6NJ_T0058533.1 MGP_C57BL6NJ_G0027017.1 mouse_genomes_project 2 154535531 154536531 - Crnkl1 protein_coding retained_intron MGP_C57BL6NJ_T0058534.1 MGP_C57BL6NJ_G0027017.1 mouse_genomes_project 2 154537111 154539860 - Crnkl1 protein_coding retained_intron MGP_C57BL6NJ_T0057838.1 MGP_C57BL6NJ_G0026858.1 mouse_genomes_project 2 133362406 133363853 + Fgf7 protein_coding processed_transcript MGP_C57BL6NJ_T0057839.1 MGP_C57BL6NJ_G0026858.1 mouse_genomes_project 2 133362406 133421541 + MGP_C57BL6NJ_P0057839 Fgf7 protein_coding protein_coding MGP_C57BL6NJ_T0057840.1 MGP_C57BL6NJ_G0026858.1 mouse_genomes_project 2 133362721 133420877 + MGP_C57BL6NJ_P0057840 Fgf7 protein_coding protein_coding MGP_C57BL6NJ_T0014138.1 MGP_C57BL6NJ_G0012183.1 mouse_genomes_project 2 157202764 157202999 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059425.1 MGP_C57BL6NJ_G0027232.1 mouse_genomes_project 2 170996276 171021386 + MGP_C57BL6NJ_P0059425 Lpin3 protein_coding protein_coding MGP_C57BL6NJ_T0059426.1 MGP_C57BL6NJ_G0027232.1 mouse_genomes_project 2 171003680 171021391 + MGP_C57BL6NJ_P0059426 Lpin3 protein_coding protein_coding MGP_C57BL6NJ_T0059427.1 MGP_C57BL6NJ_G0027232.1 mouse_genomes_project 2 171003680 171021391 + MGP_C57BL6NJ_P0059427 Lpin3 protein_coding protein_coding MGP_C57BL6NJ_T0059428.1 MGP_C57BL6NJ_G0027232.1 mouse_genomes_project 2 171003743 171021181 + MGP_C57BL6NJ_P0059428 Lpin3 protein_coding protein_coding MGP_C57BL6NJ_T0059429.1 MGP_C57BL6NJ_G0027232.1 mouse_genomes_project 2 171016937 171019126 + Lpin3 protein_coding processed_transcript MGP_C57BL6NJ_T0007431.1 MGP_C57BL6NJ_G0006095.1 mouse_genomes_project 2 97139684 97189491 + Gm13814 lincRNA lincRNA MGP_C57BL6NJ_T0004177.1 MGP_C57BL6NJ_G0003707.1 mouse_genomes_project 2 83360099 83365728 + Gm13752 antisense antisense MGP_C57BL6NJ_T0060347.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193638542 193649234 - MGP_C57BL6NJ_P0060347 Zfp512b protein_coding protein_coding MGP_C57BL6NJ_T0060348.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193638544 193647351 - MGP_C57BL6NJ_P0060348 Zfp512b protein_coding protein_coding MGP_C57BL6NJ_T0060349.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193641029 193642843 - Zfp512b protein_coding retained_intron MGP_C57BL6NJ_T0060350.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193641617 193642749 - MGP_C57BL6NJ_P0060350 Zfp512b protein_coding protein_coding MGP_C57BL6NJ_T0060351.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193641623 193642801 - MGP_C57BL6NJ_P0060351 Zfp512b protein_coding protein_coding MGP_C57BL6NJ_T0060352.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193643160 193644077 - Zfp512b protein_coding retained_intron MGP_C57BL6NJ_T0060353.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193643556 193645171 - MGP_C57BL6NJ_P0060353 Zfp512b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060354.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193644497 193645718 - Zfp512b protein_coding processed_transcript MGP_C57BL6NJ_T0060355.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193646454 193649189 - Zfp512b protein_coding processed_transcript MGP_C57BL6NJ_T0060356.1 MGP_C57BL6NJ_G0027449.1 mouse_genomes_project 2 193646953 193649234 - MGP_C57BL6NJ_P0060356 Zfp512b protein_coding protein_coding MGP_C57BL6NJ_T0056235.1 MGP_C57BL6NJ_G0026410.1 mouse_genomes_project 2 90919372 90920305 - MGP_C57BL6NJ_P0056235 Olfr1104 protein_coding protein_coding MGP_C57BL6NJ_T0102459.1 MGP_C57BL6NJ_G0040349.1 mouse_genomes_project 2 36989837 36993714 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102460.1 MGP_C57BL6NJ_G0040349.1 mouse_genomes_project 2 36993282 36994227 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0001204.1 MGP_C57BL6NJ_G0001110.1 mouse_genomes_project 2 38292402 38297259 + TEC TEC MGP_C57BL6NJ_T0055833.1 MGP_C57BL6NJ_G0026268.1 mouse_genomes_project 2 77247667 77250149 + MGP_C57BL6NJ_P0055833 Hoxd9 protein_coding protein_coding MGP_C57BL6NJ_T0058693.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160631135 160673632 - MGP_C57BL6NJ_P0058693 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058694.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160631135 160673656 - MGP_C57BL6NJ_P0058694 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058695.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160631150 160673650 - MGP_C57BL6NJ_P0058695 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058696.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160632311 160673676 - MGP_C57BL6NJ_P0058696 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058697.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160637741 160673554 - MGP_C57BL6NJ_P0058697 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058698.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160641402 160673609 - Snph protein_coding retained_intron MGP_C57BL6NJ_T0058699.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160641565 160673623 - MGP_C57BL6NJ_P0058699 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058700.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160641582 160673644 - MGP_C57BL6NJ_P0058700 Snph protein_coding protein_coding MGP_C57BL6NJ_T0058701.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160641790 160673656 - Snph protein_coding processed_transcript MGP_C57BL6NJ_T0058702.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160662348 160673650 - Snph protein_coding processed_transcript MGP_C57BL6NJ_T0058703.1 MGP_C57BL6NJ_G0027066.1 mouse_genomes_project 2 160672815 160673636 - Snph protein_coding retained_intron MGP_C57BL6NJ_T0001210.1 MGP_C57BL6NJ_G0001116.1 mouse_genomes_project 2 39608660 39612228 + TEC TEC MGP_C57BL6NJ_T0058770.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161806348 161845544 + MGP_C57BL6NJ_P0058770 H13 protein_coding protein_coding MGP_C57BL6NJ_T0058771.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161806373 161820329 + H13 protein_coding retained_intron MGP_C57BL6NJ_T0058772.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161806375 161841910 + MGP_C57BL6NJ_P0058772 H13 protein_coding protein_coding MGP_C57BL6NJ_T0058773.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161806375 161823589 + MGP_C57BL6NJ_P0058773 H13 protein_coding protein_coding MGP_C57BL6NJ_T0058774.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161806421 161841002 + MGP_C57BL6NJ_P0058774 H13 protein_coding protein_coding MGP_C57BL6NJ_T0058776.1 MGP_C57BL6NJ_G0027098.1 mouse_genomes_project 2 161828726 161833115 + H13 protein_coding retained_intron MGP_C57BL6NJ_T0007412.1 MGP_C57BL6NJ_G0006078.1 mouse_genomes_project 2 77744201 77774721 - A330043C09Rik lincRNA lincRNA MGP_C57BL6NJ_T0010619.1 MGP_C57BL6NJ_G0008704.1 mouse_genomes_project 2 27568842 27568934 + Gm22824 miRNA miRNA MGP_C57BL6NJ_T0099074.1 MGP_C57BL6NJ_G0037138.1 mouse_genomes_project 2 88034559 88034672 - n-R5s200 rRNA rRNA MGP_C57BL6NJ_T0004254.1 MGP_C57BL6NJ_G0003758.1 mouse_genomes_project 2 144113081 144116223 + Gm14218 antisense antisense MGP_C57BL6NJ_T0059948.1 MGP_C57BL6NJ_G0027358.1 mouse_genomes_project 2 181629517 181643780 - MGP_C57BL6NJ_P0059948 Cyp24a1 protein_coding protein_coding MGP_C57BL6NJ_T0058822.1 MGP_C57BL6NJ_G0027111.1 mouse_genomes_project 2 162286173 162334959 + MGP_C57BL6NJ_P0058822 Hck protein_coding protein_coding MGP_C57BL6NJ_T0058823.1 MGP_C57BL6NJ_G0027111.1 mouse_genomes_project 2 162286173 162334961 + MGP_C57BL6NJ_P0058823 Hck protein_coding protein_coding MGP_C57BL6NJ_T0056222.1 MGP_C57BL6NJ_G0026398.1 mouse_genomes_project 2 90568383 90569319 - MGP_C57BL6NJ_P0056222 Olfr1089 protein_coding protein_coding MGP_C57BL6NJ_T0013969.1 MGP_C57BL6NJ_G0012014.1 mouse_genomes_project 2 91178520 91179190 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0059924.1 MGP_C57BL6NJ_G0027353.1 mouse_genomes_project 2 179889242 179953372 - MGP_C57BL6NJ_P0059924 Zfp64 protein_coding protein_coding MGP_C57BL6NJ_T0059925.1 MGP_C57BL6NJ_G0027353.1 mouse_genomes_project 2 179902629 179908449 - MGP_C57BL6NJ_P0059925 Zfp64 protein_coding protein_coding MGP_C57BL6NJ_T0059926.1 MGP_C57BL6NJ_G0027353.1 mouse_genomes_project 2 179921658 179953057 - MGP_C57BL6NJ_P0059926 Zfp64 protein_coding protein_coding MGP_C57BL6NJ_T0059927.1 MGP_C57BL6NJ_G0027353.1 mouse_genomes_project 2 179932908 179953074 - MGP_C57BL6NJ_P0059927 Zfp64 protein_coding protein_coding MGP_C57BL6NJ_T0059928.1 MGP_C57BL6NJ_G0027353.1 mouse_genomes_project 2 179948359 179953051 - Zfp64 protein_coding retained_intron MGP_C57BL6NJ_T0013840.1 MGP_C57BL6NJ_G0011885.1 mouse_genomes_project 2 42278672 42278905 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056662.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010607 97016932 - MGP_C57BL6NJ_P0056662 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056663.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010607 97017003 - MGP_C57BL6NJ_P0056663 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056664.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010608 97016982 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056665.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010612 97016964 - MGP_C57BL6NJ_P0056665 Gyltl1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056666.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010613 97016957 - MGP_C57BL6NJ_P0056666 Gyltl1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0056667.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010621 97016974 - MGP_C57BL6NJ_P0056667 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056668.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010621 97017913 - MGP_C57BL6NJ_P0056668 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056669.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97010632 97016979 - MGP_C57BL6NJ_P0056669 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056670.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97011353 97012083 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056671.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97011536 97012338 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056672.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97012579 97015036 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056673.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97012875 97015223 - Gyltl1b protein_coding processed_transcript MGP_C57BL6NJ_T0056674.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97012948 97016019 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056675.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97013630 97016979 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056676.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97015267 97016964 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0056677.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97015880 97020815 - MGP_C57BL6NJ_P0056677 Gyltl1b protein_coding protein_coding MGP_C57BL6NJ_T0056678.1 MGP_C57BL6NJ_G0026585.1 mouse_genomes_project 2 97015930 97017891 - Gyltl1b protein_coding retained_intron MGP_C57BL6NJ_T0013774.1 MGP_C57BL6NJ_G0011819.1 mouse_genomes_project 2 17896628 17897981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0053518.1 MGP_C57BL6NJ_G0025852.1 mouse_genomes_project 2 23875348 23888512 + MGP_C57BL6NJ_P0053518 Anapc2 protein_coding protein_coding MGP_C57BL6NJ_T0053519.1 MGP_C57BL6NJ_G0025852.1 mouse_genomes_project 2 23875465 23879242 + Anapc2 protein_coding processed_transcript MGP_C57BL6NJ_T0053520.1 MGP_C57BL6NJ_G0025852.1 mouse_genomes_project 2 23876348 23881276 + MGP_C57BL6NJ_P0053520 Anapc2 protein_coding protein_coding MGP_C57BL6NJ_T0053521.1 MGP_C57BL6NJ_G0025852.1 mouse_genomes_project 2 23881863 23883328 + Anapc2 protein_coding processed_transcript MGP_C57BL6NJ_T0057219.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123859746 123927757 - MGP_C57BL6NJ_P0057219 Rasgrp1 protein_coding protein_coding MGP_C57BL6NJ_T0057220.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123859747 123927633 - MGP_C57BL6NJ_P0057220 Rasgrp1 protein_coding protein_coding MGP_C57BL6NJ_T0057221.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123862295 123927465 - MGP_C57BL6NJ_P0057221 Rasgrp1 protein_coding protein_coding MGP_C57BL6NJ_T0057222.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123862295 123927465 - MGP_C57BL6NJ_P0057222 Rasgrp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0057223.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123862295 123927465 - MGP_C57BL6NJ_P0057223 Rasgrp1 protein_coding protein_coding MGP_C57BL6NJ_T0057224.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123862295 123927465 - MGP_C57BL6NJ_P0057224 Rasgrp1 protein_coding protein_coding MGP_C57BL6NJ_T0057225.1 MGP_C57BL6NJ_G0026731.1 mouse_genomes_project 2 123878899 123927681 - Rasgrp1 protein_coding retained_intron MGP_C57BL6NJ_T0057097.1 MGP_C57BL6NJ_G0026681.1 mouse_genomes_project 2 117497442 117498378 + MGP_C57BL6NJ_P0057097 protein_coding protein_coding MGP_C57BL6NJ_T0007558.1 MGP_C57BL6NJ_G0006198.1 mouse_genomes_project 2 176811335 176812405 - Gm11466 lincRNA lincRNA MGP_C57BL6NJ_T0100225.1 MGP_C57BL6NJ_G0038271.1 mouse_genomes_project 2 156627692 156627799 - Gm25516 snRNA snRNA MGP_C57BL6NJ_T0057102.1 MGP_C57BL6NJ_G0026685.1 mouse_genomes_project 2 117611286 117612225 + MGP_C57BL6NJ_P0057102 Olfr1288 protein_coding protein_coding MGP_C57BL6NJ_T0053161.1 MGP_C57BL6NJ_G0025787.1 mouse_genomes_project 2 16070560 16083083 - MGP_C57BL6NJ_P0053161 A930004D18Rik protein_coding protein_coding MGP_C57BL6NJ_T0053162.1 MGP_C57BL6NJ_G0025787.1 mouse_genomes_project 2 16073293 16074128 - A930004D18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0053163.1 MGP_C57BL6NJ_G0025787.1 mouse_genomes_project 2 16073341 16074239 - A930004D18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0010727.1 MGP_C57BL6NJ_G0008812.1 mouse_genomes_project 2 192308294 192308398 + Mir133a-2 miRNA miRNA MGP_C57BL6NJ_T0100210.1 MGP_C57BL6NJ_G0038256.1 mouse_genomes_project 2 126617904 126618006 - Gm23814 snRNA snRNA MGP_C57BL6NJ_T0053668.1 MGP_C57BL6NJ_G0025876.1 mouse_genomes_project 2 24255249 24268119 - MGP_C57BL6NJ_P0053668 Ccdc183 protein_coding protein_coding MGP_C57BL6NJ_T0053669.1 MGP_C57BL6NJ_G0025876.1 mouse_genomes_project 2 24255307 24268100 - Ccdc183 protein_coding processed_transcript MGP_C57BL6NJ_T0058042.1 MGP_C57BL6NJ_G0026909.1 mouse_genomes_project 2 136904603 136911167 - MGP_C57BL6NJ_P0058042 Il1b protein_coding protein_coding MGP_C57BL6NJ_T0058043.1 MGP_C57BL6NJ_G0026909.1 mouse_genomes_project 2 136905155 136907385 - Il1b protein_coding processed_transcript MGP_C57BL6NJ_T0058044.1 MGP_C57BL6NJ_G0026909.1 mouse_genomes_project 2 136909762 136911167 - Il1b protein_coding retained_intron MGP_C57BL6NJ_T0004259.1 MGP_C57BL6NJ_G0003762.1 mouse_genomes_project 2 152006642 152019860 - Pcsk2os1 antisense antisense MGP_C57BL6NJ_T0004260.1 MGP_C57BL6NJ_G0003762.1 mouse_genomes_project 2 152009134 152017142 - Pcsk2os1 antisense antisense MGP_C57BL6NJ_T0053510.1 MGP_C57BL6NJ_G0025850.1 mouse_genomes_project 2 23865497 23872756 + MGP_C57BL6NJ_P0053510 Tprn protein_coding protein_coding MGP_C57BL6NJ_T0053511.1 MGP_C57BL6NJ_G0025850.1 mouse_genomes_project 2 23867120 23872427 + Tprn protein_coding processed_transcript MGP_C57BL6NJ_T0053512.1 MGP_C57BL6NJ_G0025850.1 mouse_genomes_project 2 23870434 23872042 + Tprn protein_coding processed_transcript MGP_C57BL6NJ_T0053513.1 MGP_C57BL6NJ_G0025850.1 mouse_genomes_project 2 23871806 23872386 + Tprn protein_coding processed_transcript MGP_C57BL6NJ_T0013915.1 MGP_C57BL6NJ_G0011960.1 mouse_genomes_project 2 73046869 73047767 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007536.1 MGP_C57BL6NJ_G0006178.1 mouse_genomes_project 2 166055656 166058232 - Gm14225 lincRNA lincRNA MGP_C57BL6NJ_T0018334.1 MGP_C57BL6NJ_G0015862.1 mouse_genomes_project 2 136734830 136758020 - 9830144P21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018335.1 MGP_C57BL6NJ_G0015862.1 mouse_genomes_project 2 136755773 136762139 - 9830144P21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0056273.1 MGP_C57BL6NJ_G0026440.1 mouse_genomes_project 2 91675671 91676604 - MGP_C57BL6NJ_P0056273 Olfr1135 protein_coding protein_coding MGP_C57BL6NJ_T0014160.1 MGP_C57BL6NJ_G0012205.1 mouse_genomes_project 2 164986639 164988031 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058779.1 MGP_C57BL6NJ_G0027101.1 mouse_genomes_project 2 161896847 161907883 + MGP_C57BL6NJ_P0058779 Cox4i2 protein_coding protein_coding MGP_C57BL6NJ_T0058780.1 MGP_C57BL6NJ_G0027101.1 mouse_genomes_project 2 161897768 161907880 + MGP_C57BL6NJ_P0058780 Cox4i2 protein_coding protein_coding MGP_C57BL6NJ_T0053616.1 MGP_C57BL6NJ_G0025866.1 mouse_genomes_project 2 24101546 24104925 - MGP_C57BL6NJ_P0053616 Ptgds protein_coding protein_coding MGP_C57BL6NJ_T0053617.1 MGP_C57BL6NJ_G0025866.1 mouse_genomes_project 2 24101546 24104721 - MGP_C57BL6NJ_P0053617 Ptgds protein_coding protein_coding MGP_C57BL6NJ_T0053618.1 MGP_C57BL6NJ_G0025866.1 mouse_genomes_project 2 24101546 24104628 - MGP_C57BL6NJ_P0053618 Ptgds protein_coding protein_coding MGP_C57BL6NJ_T0053619.1 MGP_C57BL6NJ_G0025866.1 mouse_genomes_project 2 24101548 24104262 - Ptgds protein_coding retained_intron MGP_C57BL6NJ_T0053620.1 MGP_C57BL6NJ_G0025866.1 mouse_genomes_project 2 24101549 24104036 - Ptgds protein_coding processed_transcript MGP_C57BL6NJ_T0007433.1 MGP_C57BL6NJ_G0006097.1 mouse_genomes_project 2 97425508 97441879 + Gm13816 lincRNA lincRNA MGP_C57BL6NJ_T0057047.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115669429 115721724 + MGP_C57BL6NJ_P0057047 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057048.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115670626 115721724 + MGP_C57BL6NJ_P0057048 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057049.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115670626 115721724 + MGP_C57BL6NJ_P0057049 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057050.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115670626 115721724 + MGP_C57BL6NJ_P0057050 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057051.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115671761 115721724 + MGP_C57BL6NJ_P0057051 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057052.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115687165 115721724 + MGP_C57BL6NJ_P0057052 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057053.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115687759 115721724 + MGP_C57BL6NJ_P0057053 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057054.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115688295 115721724 + MGP_C57BL6NJ_P0057054 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057055.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115689141 115721724 + MGP_C57BL6NJ_P0057055 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057056.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115689201 115721724 + MGP_C57BL6NJ_P0057056 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0057057.1 MGP_C57BL6NJ_G0026661.1 mouse_genomes_project 2 115704150 115721724 + MGP_C57BL6NJ_P0057057 Bdnf protein_coding protein_coding MGP_C57BL6NJ_T0010559.1 MGP_C57BL6NJ_G0008644.1 mouse_genomes_project 2 8034011 8034095 + Mir466m miRNA miRNA MGP_C57BL6NJ_T0055588.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71824543 71825788 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055589.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71824803 71857745 + MGP_C57BL6NJ_P0055589 Ppig protein_coding protein_coding MGP_C57BL6NJ_T0055590.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71824852 71836385 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055591.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71824901 71835420 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055592.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71825091 71857745 + MGP_C57BL6NJ_P0055592 Ppig protein_coding protein_coding MGP_C57BL6NJ_T0055593.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71825324 71839201 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055594.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71834839 71845260 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055595.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71835087 71836138 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055596.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71835256 71836155 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055597.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71838769 71845346 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0055598.1 MGP_C57BL6NJ_G0026222.1 mouse_genomes_project 2 71845401 71853281 + Ppig protein_coding processed_transcript MGP_C57BL6NJ_T0057723.1 MGP_C57BL6NJ_G0026828.1 mouse_genomes_project 2 129208585 129229715 + MGP_C57BL6NJ_P0057723 Trim69 protein_coding protein_coding MGP_C57BL6NJ_T0057724.1 MGP_C57BL6NJ_G0026828.1 mouse_genomes_project 2 129208687 129229712 + Trim69 protein_coding processed_transcript MGP_C57BL6NJ_T0056243.1 MGP_C57BL6NJ_G0026418.1 mouse_genomes_project 2 91116066 91117023 + MGP_C57BL6NJ_P0056243 Olfr1112 protein_coding protein_coding MGP_C57BL6NJ_T0055756.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75535062 75667491 - MGP_C57BL6NJ_P0055756 Ola1 protein_coding protein_coding MGP_C57BL6NJ_T0055757.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75535461 75667470 - Ola1 protein_coding processed_transcript MGP_C57BL6NJ_T0055758.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75535463 75666004 - MGP_C57BL6NJ_P0055758 Ola1 protein_coding protein_coding MGP_C57BL6NJ_T0055759.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75585414 75667377 - MGP_C57BL6NJ_P0055759 Ola1 protein_coding protein_coding MGP_C57BL6NJ_T0055760.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75649944 75667456 - Ola1 protein_coding processed_transcript MGP_C57BL6NJ_T0055761.1 MGP_C57BL6NJ_G0026252.1 mouse_genomes_project 2 75665914 75671968 - Ola1 protein_coding processed_transcript MGP_C57BL6NJ_T0059149.1 MGP_C57BL6NJ_G0027182.1 mouse_genomes_project 2 165714674 165736311 - MGP_C57BL6NJ_P0059149 Nfs1 protein_coding protein_coding MGP_C57BL6NJ_T0059150.1 MGP_C57BL6NJ_G0027182.1 mouse_genomes_project 2 165714685 165732058 - MGP_C57BL6NJ_P0059150 Nfs1 protein_coding protein_coding MGP_C57BL6NJ_T0059151.1 MGP_C57BL6NJ_G0027182.1 mouse_genomes_project 2 165730755 165736278 - Nfs1 protein_coding retained_intron MGP_C57BL6NJ_T0059152.1 MGP_C57BL6NJ_G0027182.1 mouse_genomes_project 2 165734035 165736305 - MGP_C57BL6NJ_P0059152 Nfs1 protein_coding protein_coding MGP_C57BL6NJ_T0004163.1 MGP_C57BL6NJ_G0003698.1 mouse_genomes_project 2 76068353 76074399 + Chrna1os antisense antisense MGP_C57BL6NJ_T0004164.1 MGP_C57BL6NJ_G0003698.1 mouse_genomes_project 2 76068363 76074420 + Chrna1os antisense antisense MGP_C57BL6NJ_T0004079.1 MGP_C57BL6NJ_G0003634.1 mouse_genomes_project 2 25412356 25417469 + Snhg7os antisense antisense MGP_C57BL6NJ_T0004080.1 MGP_C57BL6NJ_G0003634.1 mouse_genomes_project 2 25414885 25417469 + Snhg7os antisense antisense MGP_C57BL6NJ_T0004081.1 MGP_C57BL6NJ_G0003634.1 mouse_genomes_project 2 25415413 25417469 + Snhg7os antisense antisense MGP_C57BL6NJ_T0013807.1 MGP_C57BL6NJ_G0011852.1 mouse_genomes_project 2 32781062 32781329 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013771.1 MGP_C57BL6NJ_G0011816.1 mouse_genomes_project 2 17272355 17273869 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007504.1 MGP_C57BL6NJ_G0006151.1 mouse_genomes_project 2 141252087 141276500 + A430048G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0054061.1 MGP_C57BL6NJ_G0025954.1 mouse_genomes_project 2 28129043 28135526 + MGP_C57BL6NJ_P0054061 Setx protein_coding protein_coding MGP_C57BL6NJ_T0054062.1 MGP_C57BL6NJ_G0025954.1 mouse_genomes_project 2 28129854 28194345 + MGP_C57BL6NJ_P0054062 Setx protein_coding protein_coding MGP_C57BL6NJ_T0054063.1 MGP_C57BL6NJ_G0025954.1 mouse_genomes_project 2 28130748 28135730 + Setx protein_coding retained_intron MGP_C57BL6NJ_T0054064.1 MGP_C57BL6NJ_G0025954.1 mouse_genomes_project 2 28165977 28171519 + Setx protein_coding processed_transcript MGP_C57BL6NJ_T0054065.1 MGP_C57BL6NJ_G0025954.1 mouse_genomes_project 2 28173214 28191414 + MGP_C57BL6NJ_P0054065 Setx protein_coding protein_coding MGP_C57BL6NJ_T0007518.1 MGP_C57BL6NJ_G0006164.1 mouse_genomes_project 2 156032213 156033726 - Gm14110 lincRNA lincRNA MGP_C57BL6NJ_T0004275.1 MGP_C57BL6NJ_G0003774.1 mouse_genomes_project 2 160938450 160940096 - Rspo4os antisense antisense MGP_C57BL6NJ_T0014068.1 MGP_C57BL6NJ_G0012113.1 mouse_genomes_project 2 127994335 127995103 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0058420.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675127 150800202 + MGP_C57BL6NJ_P0058420 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058421.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675174 150800202 + MGP_C57BL6NJ_P0058421 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058422.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675174 149005031 + MGP_C57BL6NJ_P0058422 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058423.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675248 148707123 + MGP_C57BL6NJ_P0058423 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058424.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675251 149134570 + Macrod2 protein_coding retained_intron MGP_C57BL6NJ_T0058425.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675253 150789954 + MGP_C57BL6NJ_P0058425 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058426.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675253 148707126 + MGP_C57BL6NJ_P0058426 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058427.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675260 148800323 + Macrod2 protein_coding processed_transcript MGP_C57BL6NJ_T0058428.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675274 148941750 + Macrod2 protein_coding processed_transcript MGP_C57BL6NJ_T0058429.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675278 148704667 + Macrod2 protein_coding processed_transcript MGP_C57BL6NJ_T0058430.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 148675413 148704667 + MGP_C57BL6NJ_P0058430 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0058434.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 149346941 149473867 + Macrod2 protein_coding processed_transcript MGP_C57BL6NJ_T0058435.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 149904628 150800202 + Macrod2 protein_coding processed_transcript MGP_C57BL6NJ_T0058436.1 MGP_C57BL6NJ_G0026992.1 mouse_genomes_project 2 150569704 150629014 + MGP_C57BL6NJ_P0058436 Macrod2 protein_coding protein_coding MGP_C57BL6NJ_T0056378.1 MGP_C57BL6NJ_G0026529.1 mouse_genomes_project 2 94127531 94132296 - MGP_C57BL6NJ_P0056378 Olfr1254 protein_coding protein_coding MGP_C57BL6NJ_T0056379.1 MGP_C57BL6NJ_G0026529.1 mouse_genomes_project 2 94127531 94128476 - MGP_C57BL6NJ_P0056379 Olfr1254 protein_coding protein_coding MGP_C57BL6NJ_T0059487.1 MGP_C57BL6NJ_G0027245.1 mouse_genomes_project 2 173717546 173734398 + MGP_C57BL6NJ_P0059487 Gdap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0059488.1 MGP_C57BL6NJ_G0027245.1 mouse_genomes_project 2 173717548 173734049 + MGP_C57BL6NJ_P0059488 Gdap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0059489.1 MGP_C57BL6NJ_G0027245.1 mouse_genomes_project 2 173717548 173733029 + MGP_C57BL6NJ_P0059489 Gdap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0059490.1 MGP_C57BL6NJ_G0027245.1 mouse_genomes_project 2 173717603 173732871 + MGP_C57BL6NJ_P0059490 Gdap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0004047.1 MGP_C57BL6NJ_G0003610.1 mouse_genomes_project 2 7439950 7448410 + Gm13262 antisense antisense MGP_C57BL6NJ_T0007441.1 MGP_C57BL6NJ_G0006101.1 mouse_genomes_project 2 100220937 100224306 + Gm13794 lincRNA lincRNA MGP_C57BL6NJ_T0014211.1 MGP_C57BL6NJ_G0012256.1 mouse_genomes_project 2 191076830 191077407 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0056318.1 MGP_C57BL6NJ_G0026481.1 mouse_genomes_project 2 92912957 92913884 - MGP_C57BL6NJ_P0056318 Olfr1195 protein_coding protein_coding MGP_C57BL6NJ_T0054126.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973362 28985250 + MGP_C57BL6NJ_P0054126 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054127.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973375 28976719 + Odf2 protein_coding retained_intron MGP_C57BL6NJ_T0054128.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973861 29007697 + MGP_C57BL6NJ_P0054128 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054129.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973926 29007697 + MGP_C57BL6NJ_P0054129 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054130.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973936 29016253 + MGP_C57BL6NJ_P0054130 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054131.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973936 29016903 + MGP_C57BL6NJ_P0054131 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054132.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973939 29016253 + MGP_C57BL6NJ_P0054132 Odf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054133.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973952 28986419 + Odf2 protein_coding processed_transcript MGP_C57BL6NJ_T0054134.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973956 28986389 + MGP_C57BL6NJ_P0054134 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054135.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973958 29016903 + MGP_C57BL6NJ_P0054135 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054136.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973959 29007697 + MGP_C57BL6NJ_P0054136 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054137.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973966 28985636 + Odf2 protein_coding retained_intron MGP_C57BL6NJ_T0054138.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28973975 28988222 + MGP_C57BL6NJ_P0054138 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054139.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974036 29016904 + MGP_C57BL6NJ_P0054139 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054140.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974204 29007697 + MGP_C57BL6NJ_P0054140 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054141.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974224 28975132 + Odf2 protein_coding processed_transcript MGP_C57BL6NJ_T0054142.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974284 29007697 + MGP_C57BL6NJ_P0054142 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054143.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974297 29016253 + MGP_C57BL6NJ_P0054143 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054144.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28974681 29007694 + MGP_C57BL6NJ_P0054144 Odf2 protein_coding protein_coding MGP_C57BL6NJ_T0054145.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28976137 28985264 + Odf2 protein_coding processed_transcript MGP_C57BL6NJ_T0054146.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28987686 29000023 + Odf2 protein_coding processed_transcript MGP_C57BL6NJ_T0054147.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28987717 29000464 + Odf2 protein_coding processed_transcript MGP_C57BL6NJ_T0054148.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28997773 29000427 + Odf2 protein_coding retained_intron MGP_C57BL6NJ_T0054149.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 28999543 29004345 + Odf2 protein_coding retained_intron MGP_C57BL6NJ_T0054150.1 MGP_C57BL6NJ_G0025965.1 mouse_genomes_project 2 29010629 29011903 + Odf2 protein_coding retained_intron MGP_C57BL6NJ_T0101549.1 MGP_C57BL6NJ_G0039595.1 mouse_genomes_project 2 177785292 177785382 + Snord12 snoRNA snoRNA MGP_C57BL6NJ_T0053995.1 MGP_C57BL6NJ_G0025940.1 mouse_genomes_project 2 27456013 27462385 + Gbgt1 protein_coding processed_transcript MGP_C57BL6NJ_T0053996.1 MGP_C57BL6NJ_G0025940.1 mouse_genomes_project 2 27456013 27464538 + MGP_C57BL6NJ_P0053996 Gbgt1 protein_coding protein_coding MGP_C57BL6NJ_T0053997.1 MGP_C57BL6NJ_G0025940.1 mouse_genomes_project 2 27456868 27464538 + MGP_C57BL6NJ_P0053997 Gbgt1 protein_coding protein_coding MGP_C57BL6NJ_T0060381.1 MGP_C57BL6NJ_G0027455.1 mouse_genomes_project 2 193757784 193759434 - MGP_C57BL6NJ_P0060381 Lkaaear1 protein_coding protein_coding MGP_C57BL6NJ_T0060382.1 MGP_C57BL6NJ_G0027455.1 mouse_genomes_project 2 193757787 193758408 - MGP_C57BL6NJ_P0060382 Lkaaear1 protein_coding protein_coding MGP_C57BL6NJ_T0058459.1 MGP_C57BL6NJ_G0027001.1 mouse_genomes_project 2 152557934 152604591 + MGP_C57BL6NJ_P0058459 Banf2 protein_coding protein_coding MGP_C57BL6NJ_T0058460.1 MGP_C57BL6NJ_G0027001.1 mouse_genomes_project 2 152557977 152604591 + MGP_C57BL6NJ_P0058460 Banf2 protein_coding protein_coding MGP_C57BL6NJ_T0053689.1 MGP_C57BL6NJ_G0025883.1 mouse_genomes_project 2 24373532 24376816 + MGP_C57BL6NJ_P0053689 Obp2a protein_coding protein_coding MGP_C57BL6NJ_T0004165.1 MGP_C57BL6NJ_G0003699.1 mouse_genomes_project 2 76081663 76112281 + antisense antisense MGP_C57BL6NJ_T0004166.1 MGP_C57BL6NJ_G0003699.1 mouse_genomes_project 2 76081961 76084300 + antisense antisense MGP_C57BL6NJ_T0058926.1 MGP_C57BL6NJ_G0027142.1 mouse_genomes_project 2 163957785 163959286 + MGP_C57BL6NJ_P0058926 Actl10 protein_coding protein_coding MGP_C57BL6NJ_T0058497.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110281 153122117 + MGP_C57BL6NJ_P0058497 Sec23b protein_coding protein_coding MGP_C57BL6NJ_T0058498.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110308 153146251 + MGP_C57BL6NJ_P0058498 Sec23b protein_coding protein_coding MGP_C57BL6NJ_T0058499.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110333 153113449 + MGP_C57BL6NJ_P0058499 Sec23b protein_coding protein_coding MGP_C57BL6NJ_T0058500.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110364 153113558 + Sec23b protein_coding processed_transcript MGP_C57BL6NJ_T0058501.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110371 153120900 + MGP_C57BL6NJ_P0058501 Sec23b protein_coding protein_coding MGP_C57BL6NJ_T0058502.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153110386 153118742 + MGP_C57BL6NJ_P0058502 Sec23b protein_coding protein_coding MGP_C57BL6NJ_T0058503.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153118988 153146251 + Sec23b protein_coding processed_transcript MGP_C57BL6NJ_T0058504.1 MGP_C57BL6NJ_G0027010.1 mouse_genomes_project 2 153131212 153136620 + Sec23b protein_coding processed_transcript MGP_C57BL6NJ_T0056191.1 MGP_C57BL6NJ_G0026369.1 mouse_genomes_project 2 89550003 89551014 + MGP_C57BL6NJ_P0056191 Olfr1031 protein_coding protein_coding MGP_C57BL6NJ_T0060158.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192529439 192556874 + MGP_C57BL6NJ_P0060158 Col9a3 protein_coding protein_coding MGP_C57BL6NJ_T0060159.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192529871 192556870 + MGP_C57BL6NJ_P0060159 Col9a3 protein_coding protein_coding MGP_C57BL6NJ_T0060160.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192530455 192538811 + Col9a3 protein_coding retained_intron MGP_C57BL6NJ_T0060161.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192536218 192546449 + Col9a3 protein_coding retained_intron MGP_C57BL6NJ_T0060162.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192547146 192555983 + Col9a3 protein_coding retained_intron MGP_C57BL6NJ_T0060163.1 MGP_C57BL6NJ_G0027419.1 mouse_genomes_project 2 192549299 192556287 + Col9a3 protein_coding retained_intron MGP_C57BL6NJ_T0053898.1 MGP_C57BL6NJ_G0025920.1 mouse_genomes_project 2 25747521 25757533 + MGP_C57BL6NJ_P0053898 Stkld1 protein_coding protein_coding MGP_C57BL6NJ_T0053899.1 MGP_C57BL6NJ_G0025920.1 mouse_genomes_project 2 25747543 25768737 + MGP_C57BL6NJ_P0053899 Stkld1 protein_coding protein_coding MGP_C57BL6NJ_T0053900.1 MGP_C57BL6NJ_G0025920.1 mouse_genomes_project 2 25748797 25768632 + MGP_C57BL6NJ_P0053900 Stkld1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0059967.1 MGP_C57BL6NJ_G0027369.1 mouse_genomes_project 2 183789969 183798235 - MGP_C57BL6NJ_P0059967 Gcnt7 protein_coding protein_coding MGP_C57BL6NJ_T0059968.1 MGP_C57BL6NJ_G0027369.1 mouse_genomes_project 2 183789970 183794391 - MGP_C57BL6NJ_P0059968 Gcnt7 protein_coding protein_coding MGP_C57BL6NJ_T0010667.1 MGP_C57BL6NJ_G0008752.1 mouse_genomes_project 2 98964293 98964397 - Gm23630 miRNA miRNA MGP_C57BL6NJ_T0059282.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167101404 167111911 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059283.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167101446 167150705 + MGP_C57BL6NJ_P0059283 Rpn2 protein_coding protein_coding MGP_C57BL6NJ_T0059284.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167101533 167150705 + MGP_C57BL6NJ_P0059284 Rpn2 protein_coding protein_coding MGP_C57BL6NJ_T0059285.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167101813 167150442 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059286.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167101956 167113061 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059287.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167104330 167112942 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059288.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167105932 167150121 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059289.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167117191 167117703 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059290.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167136932 167138590 + Rpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0059291.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167138558 167146859 + Rpn2 protein_coding retained_intron MGP_C57BL6NJ_T0059292.1 MGP_C57BL6NJ_G0027203.1 mouse_genomes_project 2 167144170 167146548 + Rpn2 protein_coding retained_intron MGP_C57BL6NJ_T0001154.1 MGP_C57BL6NJ_G0001060.1 mouse_genomes_project 2 7133034 7133730 - TEC TEC MGP_C57BL6NJ_T0052785.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 603836 784107 + MGP_C57BL6NJ_P0052785 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052786.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 706391 783937 + MGP_C57BL6NJ_P0052786 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052787.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 707185 783937 + MGP_C57BL6NJ_P0052787 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052788.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 715806 786462 + MGP_C57BL6NJ_P0052788 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052789.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 715826 783937 + MGP_C57BL6NJ_P0052789 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052790.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 715826 784241 + MGP_C57BL6NJ_P0052790 Fam107b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052791.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 774805 777069 + MGP_C57BL6NJ_P0052791 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0052792.1 MGP_C57BL6NJ_G0025727.1 mouse_genomes_project 2 778043 783945 + MGP_C57BL6NJ_P0052792 Fam107b protein_coding protein_coding MGP_C57BL6NJ_T0014027.1 MGP_C57BL6NJ_G0012072.1 mouse_genomes_project 2 110156735 110157758 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0057571.1 MGP_C57BL6NJ_G0026801.1 mouse_genomes_project 2 128040174 128056400 - MGP_C57BL6NJ_P0057571 Tgm7 protein_coding protein_coding MGP_C57BL6NJ_T0007375.1 MGP_C57BL6NJ_G0006047.1 mouse_genomes_project 2 52430004 52513556 - Gm13490 lincRNA lincRNA MGP_C57BL6NJ_T0102997.1 MGP_C57BL6NJ_G0040791.1 mouse_genomes_project 2 35963302 35964241 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010616.1 MGP_C57BL6NJ_G0008701.1 mouse_genomes_project 2 25351804 25351862 - Mir126b miRNA miRNA MGP_C57BL6NJ_T0059297.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167257387 167313268 + MGP_C57BL6NJ_P0059297 Src protein_coding protein_coding MGP_C57BL6NJ_T0059298.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167263059 167295461 + Src protein_coding processed_transcript MGP_C57BL6NJ_T0059299.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167263223 167313295 + MGP_C57BL6NJ_P0059299 Src protein_coding protein_coding MGP_C57BL6NJ_T0059300.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167263236 167313271 + MGP_C57BL6NJ_P0059300 Src protein_coding protein_coding MGP_C57BL6NJ_T0059301.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167263335 167300029 + Src protein_coding processed_transcript MGP_C57BL6NJ_T0059302.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167263335 167295360 + Src protein_coding processed_transcript MGP_C57BL6NJ_T0059303.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167295424 167313271 + MGP_C57BL6NJ_P0059303 Src protein_coding protein_coding MGP_C57BL6NJ_T0059304.1 MGP_C57BL6NJ_G0027206.1 mouse_genomes_project 2 167296834 167311784 + MGP_C57BL6NJ_P0059304 Src protein_coding protein_coding MGP_C57BL6NJ_T0004143.1 MGP_C57BL6NJ_G0003685.1 mouse_genomes_project 2 69364662 69390109 - Gm13601 antisense antisense MGP_C57BL6NJ_T0011779.1 MGP_C57BL6NJ_G0009864.1 mouse_genomes_project 2 156011636 156012094 + Nkx2-2os misc_RNA misc_RNA MGP_C57BL6NJ_T0059591.1 MGP_C57BL6NJ_G0027281.1 mouse_genomes_project 2 174965934 174969520 - MGP_C57BL6NJ_P0059591 Spint3 protein_coding protein_coding MGP_C57BL6NJ_T0059800.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177653116 177705721 - MGP_C57BL6NJ_P0059800 Stau1 protein_coding protein_coding MGP_C57BL6NJ_T0059801.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177653714 177660952 - Stau1 protein_coding retained_intron MGP_C57BL6NJ_T0059802.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177653714 177705708 - MGP_C57BL6NJ_P0059802 Stau1 protein_coding protein_coding MGP_C57BL6NJ_T0059803.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177653714 177705546 - MGP_C57BL6NJ_P0059803 Stau1 protein_coding protein_coding MGP_C57BL6NJ_T0059804.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177653840 177707320 - MGP_C57BL6NJ_P0059804 Stau1 protein_coding protein_coding MGP_C57BL6NJ_T0059805.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177654813 177656799 - Stau1 protein_coding retained_intron MGP_C57BL6NJ_T0059806.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177654859 177670221 - MGP_C57BL6NJ_P0059806 Stau1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059807.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177655261 177656524 - Stau1 protein_coding retained_intron MGP_C57BL6NJ_T0059808.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177657871 177665890 - Stau1 protein_coding retained_intron MGP_C57BL6NJ_T0059809.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177658474 177668946 - Stau1 protein_coding retained_intron MGP_C57BL6NJ_T0059810.1 MGP_C57BL6NJ_G0027328.1 mouse_genomes_project 2 177669011 177681647 - Stau1 protein_coding processed_transcript MGP_C57BL6NJ_T0056359.1 MGP_C57BL6NJ_G0026516.1 mouse_genomes_project 2 93755911 93756829 - MGP_C57BL6NJ_P0056359 Olfr1239 protein_coding protein_coding MGP_C57BL6NJ_T0056927.1 MGP_C57BL6NJ_G0026634.1 mouse_genomes_project 2 109629918 109648613 + MGP_C57BL6NJ_P0056927 Cd59b protein_coding protein_coding MGP_C57BL6NJ_T0056928.1 MGP_C57BL6NJ_G0026634.1 mouse_genomes_project 2 109631023 109653944 + MGP_C57BL6NJ_P0056928 Cd59b protein_coding protein_coding MGP_C57BL6NJ_T0056929.1 MGP_C57BL6NJ_G0026634.1 mouse_genomes_project 2 109631079 109648788 + MGP_C57BL6NJ_P0056929 Cd59b protein_coding protein_coding MGP_C57BL6NJ_T0100237.1 MGP_C57BL6NJ_G0038283.1 mouse_genomes_project 2 193723196 193723303 + Gm25879 snRNA snRNA MGP_C57BL6NJ_T0054232.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420661 29436044 + MGP_C57BL6NJ_P0054232 Phyhd1 protein_coding protein_coding MGP_C57BL6NJ_T0054233.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420784 29435295 + MGP_C57BL6NJ_P0054233 Phyhd1 protein_coding protein_coding MGP_C57BL6NJ_T0054234.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420868 29434474 + MGP_C57BL6NJ_P0054234 Phyhd1 protein_coding protein_coding MGP_C57BL6NJ_T0054235.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420900 29433755 + Phyhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0054236.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420905 29435343 + MGP_C57BL6NJ_P0054236 Phyhd1 protein_coding protein_coding MGP_C57BL6NJ_T0054237.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420912 29436327 + MGP_C57BL6NJ_P0054237 Phyhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054238.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29420912 29436327 + MGP_C57BL6NJ_P0054238 Phyhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054239.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29431231 29436369 + MGP_C57BL6NJ_P0054239 Phyhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0054240.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29433859 29436083 + Phyhd1 protein_coding retained_intron MGP_C57BL6NJ_T0054241.1 MGP_C57BL6NJ_G0025980.1 mouse_genomes_project 2 29433906 29434739 + Phyhd1 protein_coding retained_intron MGP_C57BL6NJ_T0100216.1 MGP_C57BL6NJ_G0038262.1 mouse_genomes_project 2 135518199 135518336 + Gm23101 snRNA snRNA MGP_C57BL6NJ_T0004126.1 MGP_C57BL6NJ_G0003671.1 mouse_genomes_project 2 59558001 59570079 + Gm13544 antisense antisense MGP_C57BL6NJ_T0056159.1 MGP_C57BL6NJ_G0026340.1 mouse_genomes_project 2 88520530 88560379 - MGP_C57BL6NJ_P0056159 Lrrc55 protein_coding protein_coding MGP_C57BL6NJ_T0056160.1 MGP_C57BL6NJ_G0026340.1 mouse_genomes_project 2 88551750 88560379 - MGP_C57BL6NJ_P0056160 Lrrc55 protein_coding protein_coding MGP_C57BL6NJ_T0059263.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166844383 166906004 - MGP_C57BL6NJ_P0059263 Samhd1 protein_coding protein_coding MGP_C57BL6NJ_T0059264.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166846251 166905832 - MGP_C57BL6NJ_P0059264 Samhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0059265.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166846251 166905859 - MGP_C57BL6NJ_P0059265 Samhd1 protein_coding protein_coding MGP_C57BL6NJ_T0059266.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166848210 166905961 - MGP_C57BL6NJ_P0059266 Samhd1 protein_coding protein_coding MGP_C57BL6NJ_T0059267.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166848544 166860126 - Samhd1 protein_coding retained_intron MGP_C57BL6NJ_T0059268.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166851857 166905945 - MGP_C57BL6NJ_P0059268 Samhd1 protein_coding protein_coding MGP_C57BL6NJ_T0059269.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166858793 166860125 - Samhd1 protein_coding retained_intron MGP_C57BL6NJ_T0059270.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166869095 166905676 - Samhd1 protein_coding retained_intron MGP_C57BL6NJ_T0059271.1 MGP_C57BL6NJ_G0027200.1 mouse_genomes_project 2 166871378 166879589 - Samhd1 protein_coding retained_intron MGP_C57BL6NJ_T0059548.1 MGP_C57BL6NJ_G0027268.1 mouse_genomes_project 2 174626762 174631669 + MGP_C57BL6NJ_P0059548 protein_coding protein_coding MGP_C57BL6NJ_T0059549.1 MGP_C57BL6NJ_G0027268.1 mouse_genomes_project 2 174626762 174631660 + MGP_C57BL6NJ_P0059549 protein_coding protein_coding MGP_C57BL6NJ_T0054900.1 MGP_C57BL6NJ_G0026077.1 mouse_genomes_project 2 35714253 35744280 + MGP_C57BL6NJ_P0054900 Morn5 protein_coding protein_coding MGP_C57BL6NJ_T0010579.1 MGP_C57BL6NJ_G0008664.1 mouse_genomes_project 2 8062201 8062328 + Gm22091 miRNA miRNA MGP_C57BL6NJ_T0053338.1 MGP_C57BL6NJ_G0025819.1 mouse_genomes_project 2 22522991 22551773 - MGP_C57BL6NJ_P0053338 Tbpl2 protein_coding protein_coding MGP_C57BL6NJ_T0053339.1 MGP_C57BL6NJ_G0025819.1 mouse_genomes_project 2 22523185 22551710 - MGP_C57BL6NJ_P0053339 Tbpl2 protein_coding protein_coding MGP_C57BL6NJ_T0099260.1 MGP_C57BL6NJ_G0037324.1 mouse_genomes_project 2 166695571 166695707 - Gm27653 scaRNA scaRNA MGP_C57BL6NJ_T0010639.1 MGP_C57BL6NJ_G0008724.1 mouse_genomes_project 2 37983010 37983092 - Gm44455 miRNA miRNA MGP_C57BL6NJ_T0058800.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162139352 162188365 + MGP_C57BL6NJ_P0058800 Ttll9 protein_coding protein_coding MGP_C57BL6NJ_T0058801.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162139373 162184220 + MGP_C57BL6NJ_P0058801 Ttll9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058802.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162139373 162184227 + MGP_C57BL6NJ_P0058802 Ttll9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058803.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162139373 162184271 + MGP_C57BL6NJ_P0058803 Ttll9 protein_coding protein_coding MGP_C57BL6NJ_T0058804.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162139378 162187996 + MGP_C57BL6NJ_P0058804 Ttll9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058805.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162149659 162188365 + MGP_C57BL6NJ_P0058805 Ttll9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0058806.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162150939 162161753 + MGP_C57BL6NJ_P0058806 Ttll9 protein_coding protein_coding MGP_C57BL6NJ_T0058807.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162166922 162180364 + Ttll9 protein_coding retained_intron MGP_C57BL6NJ_T0058808.1 MGP_C57BL6NJ_G0027107.1 mouse_genomes_project 2 162183821 162189507 + Ttll9 protein_coding retained_intron MGP_C57BL6NJ_T0007598.1 MGP_C57BL6NJ_G0006231.1 mouse_genomes_project 2 184835603 184836758 + Gm14642 lincRNA lincRNA MGP_C57BL6NJ_T0058643.1 MGP_C57BL6NJ_G0027056.1 mouse_genomes_project 2 159773236 159820163 + MGP_C57BL6NJ_P0058643 Pygb protein_coding protein_coding MGP_C57BL6NJ_T0058644.1 MGP_C57BL6NJ_G0027056.1 mouse_genomes_project 2 159775525 159800654 + Pygb protein_coding processed_transcript MGP_C57BL6NJ_T0058645.1 MGP_C57BL6NJ_G0027056.1 mouse_genomes_project 2 159801974 159804413 + Pygb protein_coding retained_intron MGP_C57BL6NJ_T0058646.1 MGP_C57BL6NJ_G0027056.1 mouse_genomes_project 2 159812011 159816878 + Pygb protein_coding retained_intron MGP_C57BL6NJ_T0058647.1 MGP_C57BL6NJ_G0027056.1 mouse_genomes_project 2 159816792 159819039 + Pygb protein_coding retained_intron MGP_C57BL6NJ_T0013763.1 MGP_C57BL6NJ_G0011808.1 mouse_genomes_project 2 15814304 15815455 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0054945.1 MGP_C57BL6NJ_G0026103.1 mouse_genomes_project 2 36779644 36783159 + MGP_C57BL6NJ_P0054945 Olfr360 protein_coding protein_coding MGP_C57BL6NJ_T0054946.1 MGP_C57BL6NJ_G0026103.1 mouse_genomes_project 2 36782205 36783159 + MGP_C57BL6NJ_P0054946 Olfr360 protein_coding protein_coding MGP_C57BL6NJ_T0014189.1 MGP_C57BL6NJ_G0012234.1 mouse_genomes_project 2 176555815 176556377 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004063.1 MGP_C57BL6NJ_G0003624.1 mouse_genomes_project 2 19300788 19301732 + Gm13375 antisense antisense MGP_C57BL6NJ_T0056592.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96252166 96276724 + MGP_C57BL6NJ_P0056592 Arhgap1 protein_coding protein_coding MGP_C57BL6NJ_T0056593.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96252424 96276724 + MGP_C57BL6NJ_P0056593 Arhgap1 protein_coding protein_coding MGP_C57BL6NJ_T0056594.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96252528 96276724 + MGP_C57BL6NJ_P0056594 Arhgap1 protein_coding protein_coding MGP_C57BL6NJ_T0056595.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96253804 96256838 + Arhgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056596.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96253804 96256840 + Arhgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056597.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96254053 96272726 + Arhgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056598.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96255514 96276700 + MGP_C57BL6NJ_P0056598 Arhgap1 protein_coding protein_coding MGP_C57BL6NJ_T0056599.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96272913 96275759 + Arhgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0056600.1 MGP_C57BL6NJ_G0026575.1 mouse_genomes_project 2 96274328 96275445 + Arhgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0059541.1 MGP_C57BL6NJ_G0027264.1 mouse_genomes_project 2 174539123 174546328 - MGP_C57BL6NJ_P0059541 Wfdc15b protein_coding protein_coding MGP_C57BL6NJ_T0059542.1 MGP_C57BL6NJ_G0027264.1 mouse_genomes_project 2 174539123 174546299 - MGP_C57BL6NJ_P0059542 Wfdc15b protein_coding protein_coding MGP_C57BL6NJ_T0059543.1 MGP_C57BL6NJ_G0027264.1 mouse_genomes_project 2 174539124 174540253 - MGP_C57BL6NJ_P0059543 Wfdc15b protein_coding protein_coding MGP_C57BL6NJ_T0054941.1 MGP_C57BL6NJ_G0026099.1 mouse_genomes_project 2 36610681 36611614 - MGP_C57BL6NJ_P0054941 Olfr355 protein_coding protein_coding MGP_C57BL6NJ_T0055884.1 MGP_C57BL6NJ_G0026286.1 mouse_genomes_project 2 79327655 79330605 + MGP_C57BL6NJ_P0055884 Dfnb59 protein_coding protein_coding MGP_C57BL6NJ_T0055885.1 MGP_C57BL6NJ_G0026286.1 mouse_genomes_project 2 79327678 79334991 + MGP_C57BL6NJ_P0055885 Dfnb59 protein_coding protein_coding MGP_C57BL6NJ_T0055886.1 MGP_C57BL6NJ_G0026286.1 mouse_genomes_project 2 79329452 79338984 + MGP_C57BL6NJ_P0055886 Dfnb59 protein_coding protein_coding MGP_C57BL6NJ_T0007355.1 MGP_C57BL6NJ_G0006031.1 mouse_genomes_project 2 35880051 35880777 + Gm13431 lincRNA lincRNA MGP_C57BL6NJ_T0007356.1 MGP_C57BL6NJ_G0006031.1 mouse_genomes_project 2 35880099 35886268 + Gm13431 lincRNA lincRNA MGP_C57BL6NJ_T0007357.1 MGP_C57BL6NJ_G0006031.1 mouse_genomes_project 2 35883756 35886199 + Gm13431 lincRNA lincRNA MGP_C57BL6NJ_T0058873.1 MGP_C57BL6NJ_G0027126.1 mouse_genomes_project 2 163234935 163247343 + MGP_C57BL6NJ_P0058873 Bpifb6 protein_coding protein_coding MGP_C57BL6NJ_T0058874.1 MGP_C57BL6NJ_G0027126.1 mouse_genomes_project 2 163234942 163241470 + MGP_C57BL6NJ_P0058874 Bpifb6 protein_coding protein_coding MGP_C57BL6NJ_T0007560.1 MGP_C57BL6NJ_G0006200.1 mouse_genomes_project 2 176905558 176929002 + Gm11468 lincRNA lincRNA MGP_C57BL6NJ_T0001230.1 MGP_C57BL6NJ_G0001135.1 mouse_genomes_project 2 157723652 157724017 - TEC TEC MGP_C57BL6NJ_T0057033.1 MGP_C57BL6NJ_G0026657.1 mouse_genomes_project 2 112860759 112865560 - MGP_C57BL6NJ_P0057033 Fshb protein_coding protein_coding MGP_C57BL6NJ_T0056294.1 MGP_C57BL6NJ_G0026460.1 mouse_genomes_project 2 92081849 92082791 - MGP_C57BL6NJ_P0056294 Olfr73 protein_coding protein_coding MGP_C57BL6NJ_T0057086.1 MGP_C57BL6NJ_G0026671.1 mouse_genomes_project 2 117178005 117195935 - MGP_C57BL6NJ_P0057086 Gm13941 protein_coding protein_coding MGP_C57BL6NJ_T0054121.1 MGP_C57BL6NJ_G0025964.1 mouse_genomes_project 2 28949466 28951658 + MGP_C57BL6NJ_P0054121 Cercam protein_coding protein_coding MGP_C57BL6NJ_T0054122.1 MGP_C57BL6NJ_G0025964.1 mouse_genomes_project 2 28949796 28967339 + MGP_C57BL6NJ_P0054122 Cercam protein_coding protein_coding MGP_C57BL6NJ_T0054123.1 MGP_C57BL6NJ_G0025964.1 mouse_genomes_project 2 28949846 28951612 + MGP_C57BL6NJ_P0054123 Cercam protein_coding protein_coding MGP_C57BL6NJ_T0054124.1 MGP_C57BL6NJ_G0025964.1 mouse_genomes_project 2 28957457 28962663 + Cercam protein_coding retained_intron MGP_C57BL6NJ_T0054125.1 MGP_C57BL6NJ_G0025964.1 mouse_genomes_project 2 28958002 28965358 + Cercam protein_coding retained_intron MGP_C57BL6NJ_T0053868.1 MGP_C57BL6NJ_G0025915.1 mouse_genomes_project 2 25710017 25715433 - MGP_C57BL6NJ_P0053868 Med22 protein_coding protein_coding MGP_C57BL6NJ_T0053869.1 MGP_C57BL6NJ_G0025915.1 mouse_genomes_project 2 25710343 25715325 - MGP_C57BL6NJ_P0053869 Med22 protein_coding protein_coding MGP_C57BL6NJ_T0053870.1 MGP_C57BL6NJ_G0025915.1 mouse_genomes_project 2 25712864 25715334 - MGP_C57BL6NJ_P0053870 Med22 protein_coding protein_coding MGP_C57BL6NJ_T0007457.1 MGP_C57BL6NJ_G0006114.1 mouse_genomes_project 2 112210407 112278006 - Gm14015 lincRNA lincRNA MGP_C57BL6NJ_T0018341.1 MGP_C57BL6NJ_G0015867.1 mouse_genomes_project 2 139508269 139540580 - 5330413P13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018342.1 MGP_C57BL6NJ_G0015867.1 mouse_genomes_project 2 139535208 139540585 - 5330413P13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018343.1 MGP_C57BL6NJ_G0015867.1 mouse_genomes_project 2 139535425 139540548 - 5330413P13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0007295.1 MGP_C57BL6NJ_G0005986.1 mouse_genomes_project 2 2262572 2371297 - Gm26776 lincRNA lincRNA MGP_C57BL6NJ_T0058565.1 MGP_C57BL6NJ_G0027022.1 mouse_genomes_project 2 155676587 155751161 + MGP_C57BL6NJ_P0058565 Xrn2 protein_coding protein_coding MGP_C57BL6NJ_T0058566.1 MGP_C57BL6NJ_G0027022.1 mouse_genomes_project 2 155697379 155707465 + Xrn2 protein_coding retained_intron MGP_C57BL6NJ_T0058567.1 MGP_C57BL6NJ_G0027022.1 mouse_genomes_project 2 155711723 155716952 + Xrn2 protein_coding retained_intron MGP_C57BL6NJ_T0058568.1 MGP_C57BL6NJ_G0027022.1 mouse_genomes_project 2 155730487 155737948 + Xrn2 protein_coding retained_intron MGP_C57BL6NJ_T0014215.1 MGP_C57BL6NJ_G0012260.1 mouse_genomes_project 2 193788789 193789690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014212.1 MGP_C57BL6NJ_G0012257.1 mouse_genomes_project 2 191204455 191205206 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007520.1 MGP_C57BL6NJ_G0006166.1 mouse_genomes_project 2 156699183 156733911 - 9030622O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007521.1 MGP_C57BL6NJ_G0006166.1 mouse_genomes_project 2 156730415 156806850 - 9030622O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007522.1 MGP_C57BL6NJ_G0006166.1 mouse_genomes_project 2 156730569 156804917 - 9030622O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007460.1 MGP_C57BL6NJ_G0006117.1 mouse_genomes_project 2 114962688 114965435 + Gm13923 lincRNA lincRNA MGP_C57BL6NJ_T0055364.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61773795 61919628 - MGP_C57BL6NJ_P0055364 Pla2r1 protein_coding protein_coding MGP_C57BL6NJ_T0055365.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61776277 61782408 - Pla2r1 protein_coding processed_transcript MGP_C57BL6NJ_T0055366.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61798976 61801511 - Pla2r1 protein_coding retained_intron MGP_C57BL6NJ_T0055367.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61809195 61919628 - Pla2r1 protein_coding retained_intron MGP_C57BL6NJ_T0055368.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61810076 61813339 - Pla2r1 protein_coding retained_intron MGP_C57BL6NJ_T0055369.1 MGP_C57BL6NJ_G0026180.1 mouse_genomes_project 2 61898176 61919628 - Pla2r1 protein_coding retained_intron MGP_C57BL6NJ_T0056801.1 MGP_C57BL6NJ_G0026610.1 mouse_genomes_project 2 107000659 107008416 + MGP_C57BL6NJ_P0056801 Rag2 protein_coding protein_coding MGP_C57BL6NJ_T0056802.1 MGP_C57BL6NJ_G0026610.1 mouse_genomes_project 2 107000687 107006940 + MGP_C57BL6NJ_P0056802 Rag2 protein_coding protein_coding MGP_C57BL6NJ_T0018387.1 MGP_C57BL6NJ_G0015889.1 mouse_genomes_project 2 184418531 184418985 - Gm20490 processed_transcript processed_transcript MGP_C57BL6NJ_T0053328.1 MGP_C57BL6NJ_G0025816.1 mouse_genomes_project 2 21680004 21780049 + MGP_C57BL6NJ_P0053328 Nxph2 protein_coding protein_coding MGP_C57BL6NJ_T0001164.1 MGP_C57BL6NJ_G0001070.1 mouse_genomes_project 2 9350727 9351148 + TEC TEC MGP_C57BL6NJ_T0053934.1 MGP_C57BL6NJ_G0025927.1 mouse_genomes_project 2 25934396 25967091 - MGP_C57BL6NJ_P0053934 Fam163b protein_coding protein_coding MGP_C57BL6NJ_T0057083.1 MGP_C57BL6NJ_G0026670.1 mouse_genomes_project 2 116772869 116795601 + MGP_C57BL6NJ_P0057083 Muc15 protein_coding protein_coding MGP_C57BL6NJ_T0057084.1 MGP_C57BL6NJ_G0026670.1 mouse_genomes_project 2 116773140 116795601 + MGP_C57BL6NJ_P0057084 Muc15 protein_coding protein_coding MGP_C57BL6NJ_T0057085.1 MGP_C57BL6NJ_G0026670.1 mouse_genomes_project 2 116773177 116793658 + MGP_C57BL6NJ_P0057085 Muc15 protein_coding protein_coding MGP_C57BL6NJ_T0053855.1 MGP_C57BL6NJ_G0025911.1 mouse_genomes_project 2 25399491 25407384 + MGP_C57BL6NJ_P0053855 Fam69b protein_coding protein_coding MGP_C57BL6NJ_T0053856.1 MGP_C57BL6NJ_G0025911.1 mouse_genomes_project 2 25399528 25403894 + Fam69b protein_coding processed_transcript MGP_C57BL6NJ_T0053857.1 MGP_C57BL6NJ_G0025911.1 mouse_genomes_project 2 25405089 25405912 + Fam69b protein_coding processed_transcript MGP_C57BL6NJ_T0060051.1 MGP_C57BL6NJ_G0027390.1 mouse_genomes_project 2 185978066 185989737 - MGP_C57BL6NJ_P0060051 Ctsz protein_coding protein_coding MGP_C57BL6NJ_T0007316.1 MGP_C57BL6NJ_G0006003.1 mouse_genomes_project 2 16946739 16949313 - Carlr lincRNA lincRNA MGP_C57BL6NJ_T0054937.1 MGP_C57BL6NJ_G0026095.1 mouse_genomes_project 2 36533082 36534015 - MGP_C57BL6NJ_P0054937 Olfr351 protein_coding protein_coding MGP_C57BL6NJ_T0010680.1 MGP_C57BL6NJ_G0008765.1 mouse_genomes_project 2 124917281 124917377 - Gm22800 miRNA miRNA MGP_C57BL6NJ_T0014097.1 MGP_C57BL6NJ_G0012142.1 mouse_genomes_project 2 140404557 140405012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099071.1 MGP_C57BL6NJ_G0037135.1 mouse_genomes_project 2 63285126 63285243 + Gm25966 rRNA rRNA MGP_C57BL6NJ_T0054675.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32321424 32371643 + MGP_C57BL6NJ_P0054675 Fam129b protein_coding protein_coding MGP_C57BL6NJ_T0054676.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32342099 32356314 + MGP_C57BL6NJ_P0054676 Fam129b protein_coding protein_coding MGP_C57BL6NJ_T0054677.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32357263 32358943 + Fam129b protein_coding retained_intron MGP_C57BL6NJ_T0054678.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32361099 32367413 + Fam129b protein_coding processed_transcript MGP_C57BL6NJ_T0054679.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32365029 32368496 + Fam129b protein_coding processed_transcript MGP_C57BL6NJ_T0054680.1 MGP_C57BL6NJ_G0026044.1 mouse_genomes_project 2 32368030 32370028 + Fam129b protein_coding processed_transcript MGP_C57BL6NJ_T0055158.1 MGP_C57BL6NJ_G0026139.1 mouse_genomes_project 2 50110270 50208004 + MGP_C57BL6NJ_P0055158 Epc2 protein_coding protein_coding MGP_C57BL6NJ_T0055159.1 MGP_C57BL6NJ_G0026139.1 mouse_genomes_project 2 50186880 50195087 + MGP_C57BL6NJ_P0055159 Epc2 protein_coding protein_coding MGP_C57BL6NJ_T0056283.1 MGP_C57BL6NJ_G0026449.1 mouse_genomes_project 2 91852611 91853556 + MGP_C57BL6NJ_P0056283 Olfr1148 protein_coding protein_coding MGP_C57BL6NJ_T0056377.1 MGP_C57BL6NJ_G0026528.1 mouse_genomes_project 2 94091785 94093134 - MGP_C57BL6NJ_P0056377 Olfr1253 protein_coding protein_coding MGP_C57BL6NJ_T0013865.1 MGP_C57BL6NJ_G0011910.1 mouse_genomes_project 2 54348591 54349570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098562.1 MGP_C57BL6NJ_G0036735.1 mouse_genomes_project X 166897850 166900475 - MGP_C57BL6NJ_P0098562 Siah1b protein_coding protein_coding MGP_C57BL6NJ_T0012026.1 MGP_C57BL6NJ_G0010111.1 mouse_genomes_project X 86648657 86648941 - Gm24812 misc_RNA misc_RNA MGP_C57BL6NJ_T0097321.1 MGP_C57BL6NJ_G0036394.1 mouse_genomes_project X 89791059 89792052 + MGP_C57BL6NJ_P0097321 Gm44 protein_coding protein_coding MGP_C57BL6NJ_T0097764.1 MGP_C57BL6NJ_G0036517.1 mouse_genomes_project X 108901898 108910733 - MGP_C57BL6NJ_P0097764 Hmgn5 protein_coding protein_coding MGP_C57BL6NJ_T0097212.1 MGP_C57BL6NJ_G0036354.1 mouse_genomes_project X 73271622 73289567 - MGP_C57BL6NJ_P0097212 Smim9 protein_coding protein_coding MGP_C57BL6NJ_T0097213.1 MGP_C57BL6NJ_G0036354.1 mouse_genomes_project X 73271800 73287434 - MGP_C57BL6NJ_P0097213 Smim9 protein_coding protein_coding MGP_C57BL6NJ_T0097214.1 MGP_C57BL6NJ_G0036354.1 mouse_genomes_project X 73275499 73289584 - Smim9 protein_coding processed_transcript MGP_C57BL6NJ_T0016728.1 MGP_C57BL6NJ_G0014773.1 mouse_genomes_project X 17822736 17823279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097789.1 MGP_C57BL6NJ_G0036526.1 mouse_genomes_project X 112175272 112180076 + MGP_C57BL6NJ_P0097789 4933403O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0097790.1 MGP_C57BL6NJ_G0036526.1 mouse_genomes_project X 112176697 112180076 + MGP_C57BL6NJ_P0097790 4933403O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0097791.1 MGP_C57BL6NJ_G0036526.1 mouse_genomes_project X 112176806 112180003 + MGP_C57BL6NJ_P0097791 4933403O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0005782.1 MGP_C57BL6NJ_G0004867.1 mouse_genomes_project X 173074544 173075373 - Gm15247 antisense antisense MGP_C57BL6NJ_T0097596.1 MGP_C57BL6NJ_G0036464.1 mouse_genomes_project X 101260784 101266385 + MGP_C57BL6NJ_P0097596 8030474K03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097597.1 MGP_C57BL6NJ_G0036464.1 mouse_genomes_project X 101260784 101266385 + MGP_C57BL6NJ_P0097597 8030474K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0097598.1 MGP_C57BL6NJ_G0036464.1 mouse_genomes_project X 101260814 101266387 + 8030474K03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0097599.1 MGP_C57BL6NJ_G0036464.1 mouse_genomes_project X 101264427 101266389 + MGP_C57BL6NJ_P0097599 8030474K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0016846.1 MGP_C57BL6NJ_G0014891.1 mouse_genomes_project X 59206187 59206689 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096240.1 MGP_C57BL6NJ_G0036080.1 mouse_genomes_project X 9300824 9301330 + MGP_C57BL6NJ_P0096240 Gm14484 protein_coding protein_coding MGP_C57BL6NJ_T0005751.1 MGP_C57BL6NJ_G0004843.1 mouse_genomes_project X 71285837 71295063 - Gm26726 antisense antisense MGP_C57BL6NJ_T0016845.1 MGP_C57BL6NJ_G0014890.1 mouse_genomes_project X 59131813 59133043 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103613.1 MGP_C57BL6NJ_G0041405.1 mouse_genomes_project X 154135101 154136095 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100787.1 MGP_C57BL6NJ_G0038833.1 mouse_genomes_project X 62133565 62133671 + Gm26111 snRNA snRNA MGP_C57BL6NJ_T0016647.1 MGP_C57BL6NJ_G0014692.1 mouse_genomes_project X 709659 710250 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016658.1 MGP_C57BL6NJ_G0014703.1 mouse_genomes_project X 2771420 2771591 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011455.1 MGP_C57BL6NJ_G0009540.1 mouse_genomes_project X 101489003 101489107 - Gm27843 miRNA miRNA MGP_C57BL6NJ_T0017312.1 MGP_C57BL6NJ_G0015357.1 mouse_genomes_project X 153125657 153126017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016678.1 MGP_C57BL6NJ_G0014723.1 mouse_genomes_project X 6824093 6824534 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096020.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2431163 2440791 - MGP_C57BL6NJ_P0096020 Ccdc120 protein_coding protein_coding MGP_C57BL6NJ_T0096021.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437410 2439660 - MGP_C57BL6NJ_P0096021 Ccdc120 protein_coding protein_coding MGP_C57BL6NJ_T0096022.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437667 2440758 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0096023.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437681 2439681 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0096024.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437692 2440774 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0096025.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437819 2439657 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0096026.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437909 2451988 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0096027.1 MGP_C57BL6NJ_G0036020.1 mouse_genomes_project X 2437962 2451980 - Ccdc120 protein_coding processed_transcript MGP_C57BL6NJ_T0100794.1 MGP_C57BL6NJ_G0038840.1 mouse_genomes_project X 80574459 80574559 + Gm22686 snRNA snRNA MGP_C57BL6NJ_T0096237.1 MGP_C57BL6NJ_G0036077.1 mouse_genomes_project X 9300817 9301330 + MGP_C57BL6NJ_P0096237 Gm14483 protein_coding protein_coding MGP_C57BL6NJ_T0016680.1 MGP_C57BL6NJ_G0014725.1 mouse_genomes_project X 6952290 6952520 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095952.1 MGP_C57BL6NJ_G0036005.1 mouse_genomes_project X 1634108 1685129 - MGP_C57BL6NJ_P0095952 Ccnb3 protein_coding protein_coding MGP_C57BL6NJ_T0095953.1 MGP_C57BL6NJ_G0036005.1 mouse_genomes_project X 1634108 1696660 - MGP_C57BL6NJ_P0095953 Ccnb3 protein_coding protein_coding MGP_C57BL6NJ_T0097483.1 MGP_C57BL6NJ_G0036441.1 mouse_genomes_project X 99961418 99966134 - MGP_C57BL6NJ_P0097483 P2ry4 protein_coding protein_coding MGP_C57BL6NJ_T0017042.1 MGP_C57BL6NJ_G0015087.1 mouse_genomes_project X 97820298 97820786 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011484.1 MGP_C57BL6NJ_G0009569.1 mouse_genomes_project X 148866186 148866298 + Mir448 miRNA miRNA MGP_C57BL6NJ_T0009640.1 MGP_C57BL6NJ_G0007726.1 mouse_genomes_project X 170128705 170136092 + Gm15228 lincRNA lincRNA MGP_C57BL6NJ_T0016964.1 MGP_C57BL6NJ_G0015009.1 mouse_genomes_project X 84411999 84412261 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103567.1 MGP_C57BL6NJ_G0041359.1 mouse_genomes_project X 4343237 4343502 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017178.1 MGP_C57BL6NJ_G0015223.1 mouse_genomes_project X 121399301 121400475 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011394.1 MGP_C57BL6NJ_G0009479.1 mouse_genomes_project X 37818235 37818362 + Gm44490 miRNA miRNA MGP_C57BL6NJ_T0017395.1 MGP_C57BL6NJ_G0015440.1 mouse_genomes_project X 170435689 170436232 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017350.1 MGP_C57BL6NJ_G0015395.1 mouse_genomes_project X 160155306 160155527 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098444.1 MGP_C57BL6NJ_G0036710.1 mouse_genomes_project X 162000178 162088730 + MGP_C57BL6NJ_P0098444 Map7d2 protein_coding protein_coding MGP_C57BL6NJ_T0098445.1 MGP_C57BL6NJ_G0036710.1 mouse_genomes_project X 162032880 162080785 + MGP_C57BL6NJ_P0098445 Map7d2 protein_coding protein_coding MGP_C57BL6NJ_T0098446.1 MGP_C57BL6NJ_G0036710.1 mouse_genomes_project X 162047190 162075822 + MGP_C57BL6NJ_P0098446 Map7d2 protein_coding protein_coding MGP_C57BL6NJ_T0098447.1 MGP_C57BL6NJ_G0036710.1 mouse_genomes_project X 162047202 162059181 + MGP_C57BL6NJ_P0098447 Map7d2 protein_coding protein_coding MGP_C57BL6NJ_T0097887.1 MGP_C57BL6NJ_G0036561.1 mouse_genomes_project X 135351278 135411420 + MGP_C57BL6NJ_P0097887 Cenpi protein_coding protein_coding MGP_C57BL6NJ_T0097888.1 MGP_C57BL6NJ_G0036561.1 mouse_genomes_project X 135351349 135411417 + MGP_C57BL6NJ_P0097888 Cenpi protein_coding protein_coding MGP_C57BL6NJ_T0097889.1 MGP_C57BL6NJ_G0036561.1 mouse_genomes_project X 135351393 135353445 + MGP_C57BL6NJ_P0097889 Cenpi protein_coding protein_coding MGP_C57BL6NJ_T0097890.1 MGP_C57BL6NJ_G0036561.1 mouse_genomes_project X 135357773 135390566 + Cenpi protein_coding processed_transcript MGP_C57BL6NJ_T0097891.1 MGP_C57BL6NJ_G0036561.1 mouse_genomes_project X 135392235 135411418 + Cenpi protein_coding processed_transcript MGP_C57BL6NJ_T0098630.1 MGP_C57BL6NJ_G0036755.1 mouse_genomes_project X 169451211 169526598 - MGP_C57BL6NJ_P0098630 Egfl6 protein_coding protein_coding MGP_C57BL6NJ_T0016885.1 MGP_C57BL6NJ_G0014930.1 mouse_genomes_project X 68134387 68135404 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011389.1 MGP_C57BL6NJ_G0009474.1 mouse_genomes_project X 31915796 31915933 - Gm44485 miRNA miRNA MGP_C57BL6NJ_T0097917.1 MGP_C57BL6NJ_G0036569.1 mouse_genomes_project X 135762711 135772950 + MGP_C57BL6NJ_P0097917 Armcx4 protein_coding protein_coding MGP_C57BL6NJ_T0096697.1 MGP_C57BL6NJ_G0036242.1 mouse_genomes_project X 53744492 53750177 + MGP_C57BL6NJ_P0096697 Brs3 protein_coding protein_coding MGP_C57BL6NJ_T0100801.1 MGP_C57BL6NJ_G0038847.1 mouse_genomes_project X 101387222 101387317 - Gm25828 snRNA snRNA MGP_C57BL6NJ_T0017144.1 MGP_C57BL6NJ_G0015189.1 mouse_genomes_project X 114076957 114078308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012025.1 MGP_C57BL6NJ_G0010110.1 mouse_genomes_project X 81305820 81305923 - Gm23671 misc_RNA misc_RNA MGP_C57BL6NJ_T0102084.1 MGP_C57BL6NJ_G0040130.1 mouse_genomes_project X 113913749 113913873 - Gm23985 snoRNA snoRNA MGP_C57BL6NJ_T0100824.1 MGP_C57BL6NJ_G0038870.1 mouse_genomes_project X 153242771 153242875 - Gm26441 snRNA snRNA MGP_C57BL6NJ_T0012041.1 MGP_C57BL6NJ_G0010126.1 mouse_genomes_project X 138010213 138010506 + Gm23068 misc_RNA misc_RNA MGP_C57BL6NJ_T0016857.1 MGP_C57BL6NJ_G0014902.1 mouse_genomes_project X 62277958 62278861 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103603.1 MGP_C57BL6NJ_G0041395.1 mouse_genomes_project X 102225060 102332696 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019137.1 MGP_C57BL6NJ_G0016181.1 mouse_genomes_project X 134909916 134912431 - 4930570D08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0098469.1 MGP_C57BL6NJ_G0036714.1 mouse_genomes_project X 162740584 162757354 - MGP_C57BL6NJ_P0098469 Pdha1 protein_coding protein_coding MGP_C57BL6NJ_T0098470.1 MGP_C57BL6NJ_G0036714.1 mouse_genomes_project X 162745666 162747341 - Pdha1 protein_coding retained_intron MGP_C57BL6NJ_T0098471.1 MGP_C57BL6NJ_G0036714.1 mouse_genomes_project X 162747663 162757250 - Pdha1 protein_coding retained_intron MGP_C57BL6NJ_T0098472.1 MGP_C57BL6NJ_G0036714.1 mouse_genomes_project X 162755837 162757297 - Pdha1 protein_coding processed_transcript MGP_C57BL6NJ_T0005739.1 MGP_C57BL6NJ_G0004833.1 mouse_genomes_project X 45533035 45646317 - Gm14697 antisense antisense MGP_C57BL6NJ_T0103571.1 MGP_C57BL6NJ_G0041363.1 mouse_genomes_project X 33597558 33602345 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009610.1 MGP_C57BL6NJ_G0007705.1 mouse_genomes_project X 112960134 112989937 - Gm14936 lincRNA lincRNA MGP_C57BL6NJ_T0098172.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884873 145942867 + MGP_C57BL6NJ_P0098172 Alg13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098173.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884876 145907667 + MGP_C57BL6NJ_P0098173 Alg13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098174.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884876 145891572 + MGP_C57BL6NJ_P0098174 Alg13 protein_coding protein_coding MGP_C57BL6NJ_T0098175.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884891 145942867 + MGP_C57BL6NJ_P0098175 Alg13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098176.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884896 145891443 + Alg13 protein_coding processed_transcript MGP_C57BL6NJ_T0098177.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884896 145942872 + MGP_C57BL6NJ_P0098177 Alg13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098178.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145884914 145891552 + MGP_C57BL6NJ_P0098178 Alg13 protein_coding protein_coding MGP_C57BL6NJ_T0098179.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145903792 145906934 + Alg13 protein_coding processed_transcript MGP_C57BL6NJ_T0098180.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145904417 145910348 + Alg13 protein_coding retained_intron MGP_C57BL6NJ_T0098181.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145905078 145942226 + MGP_C57BL6NJ_P0098181 Alg13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098182.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145906937 145942872 + Alg13 protein_coding processed_transcript MGP_C57BL6NJ_T0098183.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145908368 145913581 + Alg13 protein_coding retained_intron MGP_C57BL6NJ_T0098184.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145914663 145942872 + Alg13 protein_coding processed_transcript MGP_C57BL6NJ_T0098185.1 MGP_C57BL6NJ_G0036649.1 mouse_genomes_project X 145925429 145938193 + Alg13 protein_coding processed_transcript MGP_C57BL6NJ_T0098193.1 MGP_C57BL6NJ_G0036654.1 mouse_genomes_project X 147044751 147105094 - MGP_C57BL6NJ_P0098193 Amot protein_coding protein_coding MGP_C57BL6NJ_T0098194.1 MGP_C57BL6NJ_G0036654.1 mouse_genomes_project X 147050155 147086708 - MGP_C57BL6NJ_P0098194 Amot protein_coding protein_coding MGP_C57BL6NJ_T0098195.1 MGP_C57BL6NJ_G0036654.1 mouse_genomes_project X 147058035 147060200 - Amot protein_coding retained_intron MGP_C57BL6NJ_T0098196.1 MGP_C57BL6NJ_G0036654.1 mouse_genomes_project X 147073930 147105345 - MGP_C57BL6NJ_P0098196 Amot protein_coding protein_coding MGP_C57BL6NJ_T0017217.1 MGP_C57BL6NJ_G0015262.1 mouse_genomes_project X 135623694 135624060 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017271.1 MGP_C57BL6NJ_G0015316.1 mouse_genomes_project X 143733821 143734079 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016702.1 MGP_C57BL6NJ_G0014747.1 mouse_genomes_project X 12431888 12434221 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097099.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72256939 72264558 + MGP_C57BL6NJ_P0097099 Atp6ap1 protein_coding protein_coding MGP_C57BL6NJ_T0097100.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72256985 72262211 + MGP_C57BL6NJ_P0097100 Atp6ap1 protein_coding protein_coding MGP_C57BL6NJ_T0097101.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72257004 72263267 + MGP_C57BL6NJ_P0097101 Atp6ap1 protein_coding protein_coding MGP_C57BL6NJ_T0097102.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72257005 72264526 + MGP_C57BL6NJ_P0097102 Atp6ap1 protein_coding protein_coding MGP_C57BL6NJ_T0097103.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72257019 72261195 + Atp6ap1 protein_coding retained_intron MGP_C57BL6NJ_T0097104.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72257075 72263300 + MGP_C57BL6NJ_P0097104 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097105.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72257104 72262351 + MGP_C57BL6NJ_P0097105 Atp6ap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097106.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72261760 72263070 + Atp6ap1 protein_coding processed_transcript MGP_C57BL6NJ_T0097107.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72262389 72263850 + Atp6ap1 protein_coding retained_intron MGP_C57BL6NJ_T0097108.1 MGP_C57BL6NJ_G0036335.1 mouse_genomes_project X 72263325 72263852 + MGP_C57BL6NJ_P0097108 Atp6ap1 protein_coding protein_coding MGP_C57BL6NJ_T0097146.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72357946 72366500 - MGP_C57BL6NJ_P0097146 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097147.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72357988 72366331 - MGP_C57BL6NJ_P0097147 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097148.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72357988 72366231 - MGP_C57BL6NJ_P0097148 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097149.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72358431 72366410 - MGP_C57BL6NJ_P0097149 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097150.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72358529 72366331 - MGP_C57BL6NJ_P0097150 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097151.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72359649 72366483 - MGP_C57BL6NJ_P0097151 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097152.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72359859 72366331 - MGP_C57BL6NJ_P0097152 Fam3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097153.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72360083 72360983 - Fam3a protein_coding retained_intron MGP_C57BL6NJ_T0097154.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72360139 72365915 - MGP_C57BL6NJ_P0097154 Fam3a protein_coding protein_coding MGP_C57BL6NJ_T0097155.1 MGP_C57BL6NJ_G0036342.1 mouse_genomes_project X 72360139 72365978 - MGP_C57BL6NJ_P0097155 Fam3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017142.1 MGP_C57BL6NJ_G0015187.1 mouse_genomes_project X 113209577 113211357 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097705.1 MGP_C57BL6NJ_G0036498.1 mouse_genomes_project X 105744061 105847094 + MGP_C57BL6NJ_P0097705 Atp7a protein_coding protein_coding MGP_C57BL6NJ_T0097706.1 MGP_C57BL6NJ_G0036498.1 mouse_genomes_project X 105744107 105847103 + MGP_C57BL6NJ_P0097706 Atp7a protein_coding protein_coding MGP_C57BL6NJ_T0097707.1 MGP_C57BL6NJ_G0036498.1 mouse_genomes_project X 105826447 105838434 + Atp7a protein_coding processed_transcript MGP_C57BL6NJ_T0097708.1 MGP_C57BL6NJ_G0036498.1 mouse_genomes_project X 105835361 105844622 + Atp7a protein_coding retained_intron MGP_C57BL6NJ_T0098530.1 MGP_C57BL6NJ_G0036727.1 mouse_genomes_project X 165621563 165652892 - MGP_C57BL6NJ_P0098530 Syap1 protein_coding protein_coding MGP_C57BL6NJ_T0098531.1 MGP_C57BL6NJ_G0036727.1 mouse_genomes_project X 165622415 165627917 - Syap1 protein_coding retained_intron MGP_C57BL6NJ_T0019113.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104716513 104750627 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019114.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104718124 104750577 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019115.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104718133 104750573 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019116.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104720250 104750655 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019117.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104720797 104750655 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019118.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104722055 104750618 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019119.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104722667 104750574 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019120.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104723199 104750586 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019121.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104723397 104750566 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019122.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104723472 104750639 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019123.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104743376 104750635 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019124.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104748395 104750625 - 5530601H04Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019125.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104749642 104760524 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019126.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104756052 104756818 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019127.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104756272 104760720 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019128.1 MGP_C57BL6NJ_G0016179.1 mouse_genomes_project X 104758285 104760548 - 5530601H04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0016801.1 MGP_C57BL6NJ_G0014846.1 mouse_genomes_project X 50081773 50082403 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012028.1 MGP_C57BL6NJ_G0010113.1 mouse_genomes_project X 103073312 103073380 - Gm27733 misc_RNA misc_RNA MGP_C57BL6NJ_T0017014.1 MGP_C57BL6NJ_G0015059.1 mouse_genomes_project X 93493273 93494174 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016783.1 MGP_C57BL6NJ_G0014828.1 mouse_genomes_project X 45074612 45074909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017388.1 MGP_C57BL6NJ_G0015433.1 mouse_genomes_project X 169135414 169135813 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097179.1 MGP_C57BL6NJ_G0036346.1 mouse_genomes_project X 72604945 72605893 + MGP_C57BL6NJ_P0097179 Olfr1325 protein_coding protein_coding MGP_C57BL6NJ_T0097431.1 MGP_C57BL6NJ_G0036427.1 mouse_genomes_project X 96648697 96693481 - MGP_C57BL6NJ_P0097431 Eda2r protein_coding protein_coding MGP_C57BL6NJ_T0097432.1 MGP_C57BL6NJ_G0036427.1 mouse_genomes_project X 96651995 96693415 - MGP_C57BL6NJ_P0097432 Eda2r protein_coding protein_coding MGP_C57BL6NJ_T0097433.1 MGP_C57BL6NJ_G0036427.1 mouse_genomes_project X 96652648 96693481 - Eda2r protein_coding retained_intron MGP_C57BL6NJ_T0097434.1 MGP_C57BL6NJ_G0036427.1 mouse_genomes_project X 96655058 96693437 - Eda2r protein_coding retained_intron MGP_C57BL6NJ_T0097041.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72178216 72202783 - MGP_C57BL6NJ_P0097041 Flna protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097042.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72178216 72206205 - MGP_C57BL6NJ_P0097042 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097043.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72178218 72202919 - MGP_C57BL6NJ_P0097043 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097044.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72178296 72202940 - MGP_C57BL6NJ_P0097044 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097045.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72178544 72202749 - MGP_C57BL6NJ_P0097045 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097046.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72179565 72181235 - Flna protein_coding processed_transcript MGP_C57BL6NJ_T0097047.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72179589 72181545 - Flna protein_coding retained_intron MGP_C57BL6NJ_T0097048.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72181203 72182376 - Flna protein_coding retained_intron MGP_C57BL6NJ_T0097049.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72181627 72183245 - MGP_C57BL6NJ_P0097049 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097050.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72181992 72182724 - Flna protein_coding retained_intron MGP_C57BL6NJ_T0097051.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72182607 72183819 - MGP_C57BL6NJ_P0097051 Flna protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097052.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72182841 72183555 - Flna protein_coding retained_intron MGP_C57BL6NJ_T0097053.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72183135 72185326 - MGP_C57BL6NJ_P0097053 Flna protein_coding protein_coding MGP_C57BL6NJ_T0097054.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72185451 72190718 - Flna protein_coding processed_transcript MGP_C57BL6NJ_T0097055.1 MGP_C57BL6NJ_G0036330.1 mouse_genomes_project X 72190836 72194310 - Flna protein_coding processed_transcript MGP_C57BL6NJ_T0016750.1 MGP_C57BL6NJ_G0014795.1 mouse_genomes_project X 35815929 35817381 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016756.1 MGP_C57BL6NJ_G0014801.1 mouse_genomes_project X 37572811 37573195 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009586.1 MGP_C57BL6NJ_G0007694.1 mouse_genomes_project X 94022540 94028277 + Gm26617 lincRNA lincRNA MGP_C57BL6NJ_T0096264.1 MGP_C57BL6NJ_G0036093.1 mouse_genomes_project X 15329229 15372275 + MGP_C57BL6NJ_P0096264 Chst7 protein_coding protein_coding MGP_C57BL6NJ_T0102621.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102739002 102843171 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102622.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102811534 102915478 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102623.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102811534 102843171 - unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102624.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102811600 102839604 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102625.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102812888 102843163 - unitary_pseudogene retained_intron MGP_C57BL6NJ_T0102626.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102814428 102884997 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102627.1 MGP_C57BL6NJ_G0040422.1 mouse_genomes_project X 102814439 102874799 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0017057.1 MGP_C57BL6NJ_G0015102.1 mouse_genomes_project X 101159457 101159983 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098123.1 MGP_C57BL6NJ_G0036633.1 mouse_genomes_project X 142562147 142599600 + Atg4a protein_coding processed_transcript MGP_C57BL6NJ_T0098124.1 MGP_C57BL6NJ_G0036633.1 mouse_genomes_project X 142562159 142656393 + MGP_C57BL6NJ_P0098124 Atg4a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098125.1 MGP_C57BL6NJ_G0036633.1 mouse_genomes_project X 142655173 142656449 + Atg4a protein_coding retained_intron MGP_C57BL6NJ_T0017190.1 MGP_C57BL6NJ_G0015235.1 mouse_genomes_project X 127201560 127202063 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017336.1 MGP_C57BL6NJ_G0015381.1 mouse_genomes_project X 157840503 157841073 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103578.1 MGP_C57BL6NJ_G0041370.1 mouse_genomes_project X 63439371 63439635 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098256.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152713475 152721036 - MGP_C57BL6NJ_P0098256 Maged2 protein_coding protein_coding MGP_C57BL6NJ_T0098257.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152713479 152720298 - Maged2 protein_coding retained_intron MGP_C57BL6NJ_T0098258.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152718169 152720408 - MGP_C57BL6NJ_P0098258 Maged2 protein_coding protein_coding MGP_C57BL6NJ_T0098259.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152718186 152720484 - MGP_C57BL6NJ_P0098259 Maged2 protein_coding protein_coding MGP_C57BL6NJ_T0098260.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152718395 152719757 - Maged2 protein_coding processed_transcript MGP_C57BL6NJ_T0098261.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152718433 152721611 - MGP_C57BL6NJ_P0098261 Maged2 protein_coding protein_coding MGP_C57BL6NJ_T0098262.1 MGP_C57BL6NJ_G0036664.1 mouse_genomes_project X 152719170 152720288 - MGP_C57BL6NJ_P0098262 Maged2 protein_coding protein_coding MGP_C57BL6NJ_T0097671.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105487509 105640276 - MGP_C57BL6NJ_P0097671 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097672.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105490311 105491945 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097673.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105491644 105493693 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097674.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105514161 105522254 - MGP_C57BL6NJ_P0097674 Atrx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097675.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105514187 105525775 - Atrx protein_coding processed_transcript MGP_C57BL6NJ_T0097676.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105522272 105534396 - MGP_C57BL6NJ_P0097676 Atrx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097677.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105534148 105544125 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097678.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105534503 105544309 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097679.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105543735 105551092 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097680.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105544088 105550806 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097681.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105550716 105577752 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097682.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105554042 105578083 - MGP_C57BL6NJ_P0097682 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097683.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105558805 105594256 - MGP_C57BL6NJ_P0097683 Atrx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097684.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105568060 105577793 - MGP_C57BL6NJ_P0097684 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097685.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105577617 105640239 - MGP_C57BL6NJ_P0097685 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097686.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105578995 105640215 - MGP_C57BL6NJ_P0097686 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097687.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105579447 105640223 - MGP_C57BL6NJ_P0097687 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097688.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105579447 105640243 - MGP_C57BL6NJ_P0097688 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097689.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105579727 105640240 - MGP_C57BL6NJ_P0097689 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097690.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105579928 105640232 - MGP_C57BL6NJ_P0097690 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097691.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105579967 105640220 - MGP_C57BL6NJ_P0097691 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097692.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105580856 105582875 - Atrx protein_coding retained_intron MGP_C57BL6NJ_T0097693.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105580876 105640111 - MGP_C57BL6NJ_P0097693 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097694.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105584442 105639493 - MGP_C57BL6NJ_P0097694 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097695.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105590788 105640176 - MGP_C57BL6NJ_P0097695 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097696.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105594213 105640270 - MGP_C57BL6NJ_P0097696 Atrx protein_coding protein_coding MGP_C57BL6NJ_T0097697.1 MGP_C57BL6NJ_G0036495.1 mouse_genomes_project X 105607837 105640219 - Atrx protein_coding processed_transcript MGP_C57BL6NJ_T0017291.1 MGP_C57BL6NJ_G0015336.1 mouse_genomes_project X 147203190 147203655 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016873.1 MGP_C57BL6NJ_G0014918.1 mouse_genomes_project X 65851916 65852282 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096164.1 MGP_C57BL6NJ_G0036058.1 mouse_genomes_project X 4659827 4660408 + MGP_C57BL6NJ_P0096164 Hypm protein_coding protein_coding MGP_C57BL6NJ_T0096392.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32440747 32441319 + Ube2a protein_coding processed_transcript MGP_C57BL6NJ_T0096393.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32441178 32442215 + Ube2a protein_coding retained_intron MGP_C57BL6NJ_T0096394.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32441178 32454485 + MGP_C57BL6NJ_P0096394 Ube2a protein_coding protein_coding MGP_C57BL6NJ_T0096395.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32441188 32455159 + MGP_C57BL6NJ_P0096395 Ube2a protein_coding protein_coding MGP_C57BL6NJ_T0096396.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32441333 32455464 + MGP_C57BL6NJ_P0096396 Ube2a protein_coding protein_coding MGP_C57BL6NJ_T0096397.1 MGP_C57BL6NJ_G0036132.1 mouse_genomes_project X 32452711 32454490 + Ube2a protein_coding retained_intron MGP_C57BL6NJ_T0096782.1 MGP_C57BL6NJ_G0036274.1 mouse_genomes_project X 66942339 67471188 + MGP_C57BL6NJ_P0096782 Aff2 protein_coding protein_coding MGP_C57BL6NJ_T0096783.1 MGP_C57BL6NJ_G0036274.1 mouse_genomes_project X 66942550 67143830 + Aff2 protein_coding processed_transcript MGP_C57BL6NJ_T0096784.1 MGP_C57BL6NJ_G0036274.1 mouse_genomes_project X 66942745 67387691 + Aff2 protein_coding processed_transcript MGP_C57BL6NJ_T0096785.1 MGP_C57BL6NJ_G0036274.1 mouse_genomes_project X 66942837 67470982 + MGP_C57BL6NJ_P0096785 Aff2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096786.1 MGP_C57BL6NJ_G0036274.1 mouse_genomes_project X 67459842 67469928 + Aff2 protein_coding retained_intron MGP_C57BL6NJ_T0096525.1 MGP_C57BL6NJ_G0036180.1 mouse_genomes_project X 41127893 41129781 + MGP_C57BL6NJ_P0096525 Prr32 protein_coding protein_coding MGP_C57BL6NJ_T0097797.1 MGP_C57BL6NJ_G0036529.1 mouse_genomes_project X 112452573 112517767 + MGP_C57BL6NJ_P0097797 2010106E10Rik protein_coding protein_coding MGP_C57BL6NJ_T0097798.1 MGP_C57BL6NJ_G0036529.1 mouse_genomes_project X 112452574 112517757 + MGP_C57BL6NJ_P0097798 2010106E10Rik protein_coding protein_coding MGP_C57BL6NJ_T0019071.1 MGP_C57BL6NJ_G0016162.1 mouse_genomes_project X 2245683 2295522 - Gm36995 processed_transcript retained_intron MGP_C57BL6NJ_T0095999.1 MGP_C57BL6NJ_G0036016.1 mouse_genomes_project X 2360683 2370102 - Magix protein_coding processed_transcript MGP_C57BL6NJ_T0096000.1 MGP_C57BL6NJ_G0036016.1 mouse_genomes_project X 2362145 2369940 - MGP_C57BL6NJ_P0096000 Magix protein_coding protein_coding MGP_C57BL6NJ_T0016813.1 MGP_C57BL6NJ_G0014858.1 mouse_genomes_project X 53121959 53122432 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017009.1 MGP_C57BL6NJ_G0015054.1 mouse_genomes_project X 93123783 93125184 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016650.1 MGP_C57BL6NJ_G0014695.1 mouse_genomes_project X 2222732 2223295 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016755.1 MGP_C57BL6NJ_G0014800.1 mouse_genomes_project X 37233113 37233369 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098021.1 MGP_C57BL6NJ_G0036603.1 mouse_genomes_project X 138291376 138317806 - MGP_C57BL6NJ_P0098021 protein_coding protein_coding MGP_C57BL6NJ_T0097264.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76625656 76763653 - MGP_C57BL6NJ_P0097264 Prrg1 protein_coding protein_coding MGP_C57BL6NJ_T0097265.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76625656 76763762 - MGP_C57BL6NJ_P0097265 Prrg1 protein_coding protein_coding MGP_C57BL6NJ_T0097266.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76625656 76763767 - MGP_C57BL6NJ_P0097266 Prrg1 protein_coding protein_coding MGP_C57BL6NJ_T0097267.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76644776 76763726 - Prrg1 protein_coding processed_transcript MGP_C57BL6NJ_T0097268.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76657144 76763653 - Prrg1 protein_coding retained_intron MGP_C57BL6NJ_T0097269.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76657161 76763767 - Prrg1 protein_coding retained_intron MGP_C57BL6NJ_T0097270.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76660237 76763765 - MGP_C57BL6NJ_P0097270 Prrg1 protein_coding protein_coding MGP_C57BL6NJ_T0097271.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76692245 76763762 - Prrg1 protein_coding retained_intron MGP_C57BL6NJ_T0097272.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76695278 76763761 - Prrg1 protein_coding retained_intron MGP_C57BL6NJ_T0097273.1 MGP_C57BL6NJ_G0036377.1 mouse_genomes_project X 76695744 76763723 - Prrg1 protein_coding processed_transcript MGP_C57BL6NJ_T0017294.1 MGP_C57BL6NJ_G0015339.1 mouse_genomes_project X 147442419 147443237 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017380.1 MGP_C57BL6NJ_G0015425.1 mouse_genomes_project X 166114165 166114635 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016706.1 MGP_C57BL6NJ_G0014751.1 mouse_genomes_project X 13553368 13553525 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017329.1 MGP_C57BL6NJ_G0015374.1 mouse_genomes_project X 156728638 156729285 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102082.1 MGP_C57BL6NJ_G0040128.1 mouse_genomes_project X 103718127 103718265 - Gm22266 snoRNA snoRNA MGP_C57BL6NJ_T0016865.1 MGP_C57BL6NJ_G0014910.1 mouse_genomes_project X 64194646 64195057 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016675.1 MGP_C57BL6NJ_G0014720.1 mouse_genomes_project X 6092026 6092655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016920.1 MGP_C57BL6NJ_G0014965.1 mouse_genomes_project X 74139208 74140020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011483.1 MGP_C57BL6NJ_G0009568.1 mouse_genomes_project X 148814382 148814520 + Gm24627 miRNA miRNA MGP_C57BL6NJ_T0098113.1 MGP_C57BL6NJ_G0036629.1 mouse_genomes_project X 142265638 142279753 + MGP_C57BL6NJ_P0098113 Mid2 protein_coding protein_coding MGP_C57BL6NJ_T0098114.1 MGP_C57BL6NJ_G0036629.1 mouse_genomes_project X 142265995 142368306 + MGP_C57BL6NJ_P0098114 Mid2 protein_coding protein_coding MGP_C57BL6NJ_T0098115.1 MGP_C57BL6NJ_G0036629.1 mouse_genomes_project X 142266111 142364586 + MGP_C57BL6NJ_P0098115 Mid2 protein_coding protein_coding MGP_C57BL6NJ_T0098116.1 MGP_C57BL6NJ_G0036629.1 mouse_genomes_project X 142279072 142368306 + MGP_C57BL6NJ_P0098116 Mid2 protein_coding protein_coding MGP_C57BL6NJ_T0098117.1 MGP_C57BL6NJ_G0036629.1 mouse_genomes_project X 142349685 142352836 + Mid2 protein_coding retained_intron MGP_C57BL6NJ_T0097649.1 MGP_C57BL6NJ_G0036482.1 mouse_genomes_project X 103034958 103093219 + MGP_C57BL6NJ_P0097649 Gm26992 protein_coding protein_coding MGP_C57BL6NJ_T0098639.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170275875 170302998 - MGP_C57BL6NJ_P0098639 Tlr7 protein_coding protein_coding MGP_C57BL6NJ_T0098640.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170275877 170303028 - MGP_C57BL6NJ_P0098640 Tlr7 protein_coding protein_coding MGP_C57BL6NJ_T0098641.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170276160 170302967 - MGP_C57BL6NJ_P0098641 Tlr7 protein_coding protein_coding MGP_C57BL6NJ_T0098642.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170279288 170302961 - MGP_C57BL6NJ_P0098642 Tlr7 protein_coding protein_coding MGP_C57BL6NJ_T0098643.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170279302 170302980 - MGP_C57BL6NJ_P0098643 Tlr7 protein_coding protein_coding MGP_C57BL6NJ_T0098644.1 MGP_C57BL6NJ_G0036758.1 mouse_genomes_project X 170290155 170302913 - Tlr7 protein_coding processed_transcript MGP_C57BL6NJ_T0005754.1 MGP_C57BL6NJ_G0004846.1 mouse_genomes_project X 74447518 74448101 - Gm14707 antisense antisense MGP_C57BL6NJ_T0098384.1 MGP_C57BL6NJ_G0036692.1 mouse_genomes_project X 156627080 156633166 - MGP_C57BL6NJ_P0098384 protein_coding protein_coding MGP_C57BL6NJ_T0017088.1 MGP_C57BL6NJ_G0015133.1 mouse_genomes_project X 103395834 103396320 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098020.1 MGP_C57BL6NJ_G0036602.1 mouse_genomes_project X 138291207 138321904 - MGP_C57BL6NJ_P0098020 protein_coding protein_coding MGP_C57BL6NJ_T0011426.1 MGP_C57BL6NJ_G0009511.1 mouse_genomes_project X 64217577 64217655 - Mir880 miRNA miRNA MGP_C57BL6NJ_T0009611.1 MGP_C57BL6NJ_G0007706.1 mouse_genomes_project X 114970114 114971726 + 4930555B12Rik lincRNA lincRNA MGP_C57BL6NJ_T0016748.1 MGP_C57BL6NJ_G0014793.1 mouse_genomes_project X 35808072 35808501 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011473.1 MGP_C57BL6NJ_G0009558.1 mouse_genomes_project X 141892159 141892224 + Mir3475 miRNA miRNA MGP_C57BL6NJ_T0096083.1 MGP_C57BL6NJ_G0036031.1 mouse_genomes_project X 2633971 2638560 + MGP_C57BL6NJ_P0096083 Pcsk1n protein_coding protein_coding MGP_C57BL6NJ_T0017073.1 MGP_C57BL6NJ_G0015118.1 mouse_genomes_project X 102808347 102809659 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017351.1 MGP_C57BL6NJ_G0015396.1 mouse_genomes_project X 160671553 160672637 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005778.1 MGP_C57BL6NJ_G0004863.1 mouse_genomes_project X 164630098 164630653 + Gm15202 antisense antisense MGP_C57BL6NJ_T0098055.1 MGP_C57BL6NJ_G0036612.1 mouse_genomes_project X 140598261 140605424 + MGP_C57BL6NJ_P0098055 4930513O06Rik protein_coding protein_coding MGP_C57BL6NJ_T0097824.1 MGP_C57BL6NJ_G0036540.1 mouse_genomes_project X 118752138 118753168 - MGP_C57BL6NJ_P0097824 Tgif2lx2 protein_coding protein_coding MGP_C57BL6NJ_T0096415.1 MGP_C57BL6NJ_G0036141.1 mouse_genomes_project X 32778067 32779290 + MGP_C57BL6NJ_P0096415 Rnf113a1 protein_coding protein_coding MGP_C57BL6NJ_T0097838.1 MGP_C57BL6NJ_G0036545.1 mouse_genomes_project X 127651024 127688261 + MGP_C57BL6NJ_P0097838 Gm382 protein_coding protein_coding MGP_C57BL6NJ_T0097664.1 MGP_C57BL6NJ_G0036490.1 mouse_genomes_project X 104529986 104532302 - MGP_C57BL6NJ_P0097664 Magee2 protein_coding protein_coding MGP_C57BL6NJ_T0100766.1 MGP_C57BL6NJ_G0038812.1 mouse_genomes_project X 15019272 15019379 - Gm23678 snRNA snRNA MGP_C57BL6NJ_T0011385.1 MGP_C57BL6NJ_G0009470.1 mouse_genomes_project X 14370280 14370359 - Mir222 miRNA miRNA MGP_C57BL6NJ_T0096063.1 MGP_C57BL6NJ_G0036025.1 mouse_genomes_project X 2589316 2591376 + Pim2 protein_coding retained_intron MGP_C57BL6NJ_T0096064.1 MGP_C57BL6NJ_G0036025.1 mouse_genomes_project X 2589356 2594486 + MGP_C57BL6NJ_P0096064 Pim2 protein_coding protein_coding MGP_C57BL6NJ_T0096065.1 MGP_C57BL6NJ_G0036025.1 mouse_genomes_project X 2589360 2594482 + MGP_C57BL6NJ_P0096065 Pim2 protein_coding protein_coding MGP_C57BL6NJ_T0096066.1 MGP_C57BL6NJ_G0036025.1 mouse_genomes_project X 2589672 2592456 + Pim2 protein_coding processed_transcript MGP_C57BL6NJ_T0096873.1 MGP_C57BL6NJ_G0036305.1 mouse_genomes_project X 71319929 71321569 - MGP_C57BL6NJ_P0096873 Trex2 protein_coding protein_coding MGP_C57BL6NJ_T0097641.1 MGP_C57BL6NJ_G0036477.1 mouse_genomes_project X 102425954 102429610 - MGP_C57BL6NJ_P0097641 Dmrtc1a protein_coding protein_coding MGP_C57BL6NJ_T0097642.1 MGP_C57BL6NJ_G0036477.1 mouse_genomes_project X 102425960 102429210 - MGP_C57BL6NJ_P0097642 Dmrtc1a protein_coding protein_coding MGP_C57BL6NJ_T0097643.1 MGP_C57BL6NJ_G0036477.1 mouse_genomes_project X 102425960 102429299 - MGP_C57BL6NJ_P0097643 Dmrtc1a protein_coding protein_coding MGP_C57BL6NJ_T0097644.1 MGP_C57BL6NJ_G0036477.1 mouse_genomes_project X 102425960 102429610 - MGP_C57BL6NJ_P0097644 Dmrtc1a protein_coding protein_coding MGP_C57BL6NJ_T0016752.1 MGP_C57BL6NJ_G0014797.1 mouse_genomes_project X 36530232 36530511 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097324.1 MGP_C57BL6NJ_G0036397.1 mouse_genomes_project X 91045905 91069888 - MGP_C57BL6NJ_P0097324 protein_coding protein_coding MGP_C57BL6NJ_T0096871.1 MGP_C57BL6NJ_G0036304.1 mouse_genomes_project X 71294722 71313223 + MGP_C57BL6NJ_P0096871 Zfp92 protein_coding protein_coding MGP_C57BL6NJ_T0096872.1 MGP_C57BL6NJ_G0036304.1 mouse_genomes_project X 71295186 71314610 + MGP_C57BL6NJ_P0096872 Zfp92 protein_coding protein_coding MGP_C57BL6NJ_T0016990.1 MGP_C57BL6NJ_G0015035.1 mouse_genomes_project X 89278027 89280433 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017373.1 MGP_C57BL6NJ_G0015418.1 mouse_genomes_project X 165425825 165426280 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016902.1 MGP_C57BL6NJ_G0014947.1 mouse_genomes_project X 72486113 72486946 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016807.1 MGP_C57BL6NJ_G0014852.1 mouse_genomes_project X 50634529 50634706 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011410.1 MGP_C57BL6NJ_G0009495.1 mouse_genomes_project X 49445002 49445073 - Mir503 miRNA miRNA MGP_C57BL6NJ_T0100788.1 MGP_C57BL6NJ_G0038834.1 mouse_genomes_project X 64144689 64144828 + Gm23000 snRNA snRNA MGP_C57BL6NJ_T0009576.1 MGP_C57BL6NJ_G0007685.1 mouse_genomes_project X 64942399 64943407 + 1700036O09Rik lincRNA lincRNA MGP_C57BL6NJ_T0100821.1 MGP_C57BL6NJ_G0038867.1 mouse_genomes_project X 146757254 146757399 + Gm25097 snRNA snRNA MGP_C57BL6NJ_T0096609.1 MGP_C57BL6NJ_G0036206.1 mouse_genomes_project X 47098735 47151484 + MGP_C57BL6NJ_P0096609 Stk26 protein_coding protein_coding MGP_C57BL6NJ_T0096610.1 MGP_C57BL6NJ_G0036206.1 mouse_genomes_project X 47099129 47138463 + Stk26 protein_coding retained_intron MGP_C57BL6NJ_T0096611.1 MGP_C57BL6NJ_G0036206.1 mouse_genomes_project X 47099129 47151484 + MGP_C57BL6NJ_P0096611 Stk26 protein_coding protein_coding MGP_C57BL6NJ_T0096612.1 MGP_C57BL6NJ_G0036206.1 mouse_genomes_project X 47136776 47150237 + Stk26 protein_coding retained_intron MGP_C57BL6NJ_T0097750.1 MGP_C57BL6NJ_G0036512.1 mouse_genomes_project X 107653806 107692826 - MGP_C57BL6NJ_P0097750 2610002M06Rik protein_coding protein_coding MGP_C57BL6NJ_T0097751.1 MGP_C57BL6NJ_G0036512.1 mouse_genomes_project X 107658892 107670641 - 2610002M06Rik protein_coding retained_intron MGP_C57BL6NJ_T0096889.1 MGP_C57BL6NJ_G0036310.1 mouse_genomes_project X 71556706 71560437 - MGP_C57BL6NJ_P0096889 Pnck protein_coding protein_coding MGP_C57BL6NJ_T0096890.1 MGP_C57BL6NJ_G0036310.1 mouse_genomes_project X 71556706 71560541 - MGP_C57BL6NJ_P0096890 Pnck protein_coding protein_coding MGP_C57BL6NJ_T0096891.1 MGP_C57BL6NJ_G0036310.1 mouse_genomes_project X 71556707 71560830 - MGP_C57BL6NJ_P0096891 Pnck protein_coding protein_coding MGP_C57BL6NJ_T0096892.1 MGP_C57BL6NJ_G0036310.1 mouse_genomes_project X 71556963 71558544 - Pnck protein_coding retained_intron MGP_C57BL6NJ_T0096893.1 MGP_C57BL6NJ_G0036310.1 mouse_genomes_project X 71557988 71560146 - MGP_C57BL6NJ_P0096893 Pnck protein_coding protein_coding MGP_C57BL6NJ_T0096564.1 MGP_C57BL6NJ_G0036191.1 mouse_genomes_project X 44665207 44705675 - Aifm1 protein_coding retained_intron MGP_C57BL6NJ_T0096565.1 MGP_C57BL6NJ_G0036191.1 mouse_genomes_project X 44665207 44705808 - MGP_C57BL6NJ_P0096565 Aifm1 protein_coding protein_coding MGP_C57BL6NJ_T0096566.1 MGP_C57BL6NJ_G0036191.1 mouse_genomes_project X 44665207 44705812 - MGP_C57BL6NJ_P0096566 Aifm1 protein_coding protein_coding MGP_C57BL6NJ_T0096567.1 MGP_C57BL6NJ_G0036191.1 mouse_genomes_project X 44665208 44673160 - Aifm1 protein_coding processed_transcript MGP_C57BL6NJ_T0096568.1 MGP_C57BL6NJ_G0036191.1 mouse_genomes_project X 44675721 44676782 - Aifm1 protein_coding processed_transcript MGP_C57BL6NJ_T0011402.1 MGP_C57BL6NJ_G0009487.1 mouse_genomes_project X 49100925 49101005 - Mir20b miRNA miRNA MGP_C57BL6NJ_T0098369.1 MGP_C57BL6NJ_G0036686.1 mouse_genomes_project X 155412570 155569192 + MGP_C57BL6NJ_P0098369 Klf8 protein_coding protein_coding MGP_C57BL6NJ_T0098370.1 MGP_C57BL6NJ_G0036686.1 mouse_genomes_project X 155412852 155594823 + MGP_C57BL6NJ_P0098370 Klf8 protein_coding protein_coding MGP_C57BL6NJ_T0098371.1 MGP_C57BL6NJ_G0036686.1 mouse_genomes_project X 155552629 155594488 + MGP_C57BL6NJ_P0098371 Klf8 protein_coding protein_coding MGP_C57BL6NJ_T0098101.1 MGP_C57BL6NJ_G0036625.1 mouse_genomes_project X 141632731 141679370 + MGP_C57BL6NJ_P0098101 Pih1h3b protein_coding protein_coding MGP_C57BL6NJ_T0098367.1 MGP_C57BL6NJ_G0036685.1 mouse_genomes_project X 155314787 155350374 + MGP_C57BL6NJ_P0098367 Rragb protein_coding protein_coding MGP_C57BL6NJ_T0098368.1 MGP_C57BL6NJ_G0036685.1 mouse_genomes_project X 155314793 155329494 + MGP_C57BL6NJ_P0098368 Rragb protein_coding protein_coding MGP_C57BL6NJ_T0096642.1 MGP_C57BL6NJ_G0036219.1 mouse_genomes_project X 49460957 49640284 - MGP_C57BL6NJ_P0096642 Plac1 protein_coding protein_coding MGP_C57BL6NJ_T0096643.1 MGP_C57BL6NJ_G0036219.1 mouse_genomes_project X 49460958 49508354 - MGP_C57BL6NJ_P0096643 Plac1 protein_coding protein_coding MGP_C57BL6NJ_T0096644.1 MGP_C57BL6NJ_G0036219.1 mouse_genomes_project X 49461134 49607379 - MGP_C57BL6NJ_P0096644 Plac1 protein_coding protein_coding MGP_C57BL6NJ_T0098154.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145014219 145308032 + MGP_C57BL6NJ_P0098154 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098155.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145014326 145270672 + MGP_C57BL6NJ_P0098155 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098156.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145163124 145308032 + MGP_C57BL6NJ_P0098156 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098157.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145163207 145197295 + MGP_C57BL6NJ_P0098157 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098158.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145163225 145219986 + MGP_C57BL6NJ_P0098158 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098159.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145163360 145238263 + MGP_C57BL6NJ_P0098159 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098160.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145163413 145308032 + MGP_C57BL6NJ_P0098160 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098161.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145164579 145308032 + MGP_C57BL6NJ_P0098161 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098162.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145164579 145308032 + MGP_C57BL6NJ_P0098162 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0098163.1 MGP_C57BL6NJ_G0036646.1 mouse_genomes_project X 145197196 145308036 + MGP_C57BL6NJ_P0098163 Pak3 protein_coding protein_coding MGP_C57BL6NJ_T0016918.1 MGP_C57BL6NJ_G0014963.1 mouse_genomes_project X 74138330 74140020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011435.1 MGP_C57BL6NJ_G0009520.1 mouse_genomes_project X 65511629 65511695 - Mir201 miRNA miRNA MGP_C57BL6NJ_T0102062.1 MGP_C57BL6NJ_G0040108.1 mouse_genomes_project X 54112333 54112404 - Snord61 snoRNA snoRNA MGP_C57BL6NJ_T0095954.1 MGP_C57BL6NJ_G0036006.1 mouse_genomes_project X 1724216 1735143 + MGP_C57BL6NJ_P0095954 Akap4 protein_coding protein_coding MGP_C57BL6NJ_T0095955.1 MGP_C57BL6NJ_G0036006.1 mouse_genomes_project X 1724217 1735138 + MGP_C57BL6NJ_P0095955 Akap4 protein_coding protein_coding MGP_C57BL6NJ_T0095956.1 MGP_C57BL6NJ_G0036006.1 mouse_genomes_project X 1724910 1735125 + MGP_C57BL6NJ_P0095956 Akap4 protein_coding protein_coding MGP_C57BL6NJ_T0009565.1 MGP_C57BL6NJ_G0007678.1 mouse_genomes_project X 34185840 34191418 + Gm7598 lincRNA lincRNA MGP_C57BL6NJ_T0017366.1 MGP_C57BL6NJ_G0015411.1 mouse_genomes_project X 162985297 162989465 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098651.1 MGP_C57BL6NJ_G0036761.1 mouse_genomes_project X 171696199 171718692 - MGP_C57BL6NJ_P0098651 Msl3 protein_coding protein_coding MGP_C57BL6NJ_T0098652.1 MGP_C57BL6NJ_G0036761.1 mouse_genomes_project X 171699061 171703958 - Msl3 protein_coding retained_intron MGP_C57BL6NJ_T0098653.1 MGP_C57BL6NJ_G0036761.1 mouse_genomes_project X 171703629 171717382 - Msl3 protein_coding retained_intron MGP_C57BL6NJ_T0016791.1 MGP_C57BL6NJ_G0014836.1 mouse_genomes_project X 47485659 47486096 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098052.1 MGP_C57BL6NJ_G0036611.1 mouse_genomes_project X 140591275 140597236 - MGP_C57BL6NJ_P0098052 Serpina7 protein_coding protein_coding MGP_C57BL6NJ_T0098053.1 MGP_C57BL6NJ_G0036611.1 mouse_genomes_project X 140591275 140597234 - MGP_C57BL6NJ_P0098053 Serpina7 protein_coding protein_coding MGP_C57BL6NJ_T0098054.1 MGP_C57BL6NJ_G0036611.1 mouse_genomes_project X 140595504 140597255 - MGP_C57BL6NJ_P0098054 Serpina7 protein_coding protein_coding MGP_C57BL6NJ_T0096439.1 MGP_C57BL6NJ_G0036160.1 mouse_genomes_project X 33800292 33809105 + MGP_C57BL6NJ_P0096439 Rhox13 protein_coding protein_coding MGP_C57BL6NJ_T0096104.1 MGP_C57BL6NJ_G0036037.1 mouse_genomes_project X 2808413 2819058 - MGP_C57BL6NJ_P0096104 Was protein_coding protein_coding MGP_C57BL6NJ_T0016906.1 MGP_C57BL6NJ_G0014951.1 mouse_genomes_project X 72565091 72565840 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011399.1 MGP_C57BL6NJ_G0009484.1 mouse_genomes_project X 49100505 49100580 - Mir363 miRNA miRNA MGP_C57BL6NJ_T0017098.1 MGP_C57BL6NJ_G0015143.1 mouse_genomes_project X 105024736 105025473 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096509.1 MGP_C57BL6NJ_G0036174.1 mouse_genomes_project X 38379266 38381100 + MGP_C57BL6NJ_P0096509 Gm43337 protein_coding protein_coding MGP_C57BL6NJ_T0012031.1 MGP_C57BL6NJ_G0010116.1 mouse_genomes_project X 103104681 103104804 + Gm27875 misc_RNA misc_RNA MGP_C57BL6NJ_T0016800.1 MGP_C57BL6NJ_G0014845.1 mouse_genomes_project X 50067925 50068485 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016965.1 MGP_C57BL6NJ_G0015010.1 mouse_genomes_project X 84629655 84630169 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017010.1 MGP_C57BL6NJ_G0015055.1 mouse_genomes_project X 93132607 93133109 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102064.1 MGP_C57BL6NJ_G0040110.1 mouse_genomes_project X 65080846 65080955 - Gm26276 snoRNA snoRNA MGP_C57BL6NJ_T0097726.1 MGP_C57BL6NJ_G0036505.1 mouse_genomes_project X 106655145 106658708 - MGP_C57BL6NJ_P0097726 Zcchc5 protein_coding protein_coding MGP_C57BL6NJ_T0097785.1 MGP_C57BL6NJ_G0036524.1 mouse_genomes_project X 111479845 111580714 - MGP_C57BL6NJ_P0097785 Hdx protein_coding protein_coding MGP_C57BL6NJ_T0016851.1 MGP_C57BL6NJ_G0014896.1 mouse_genomes_project X 60233710 60234623 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017239.1 MGP_C57BL6NJ_G0015284.1 mouse_genomes_project X 138450583 138451170 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096389.1 MGP_C57BL6NJ_G0036131.1 mouse_genomes_project X 32398863 32419294 - C330007P06Rik protein_coding retained_intron MGP_C57BL6NJ_T0096390.1 MGP_C57BL6NJ_G0036131.1 mouse_genomes_project X 32407748 32429568 - MGP_C57BL6NJ_P0096390 C330007P06Rik protein_coding protein_coding MGP_C57BL6NJ_T0096391.1 MGP_C57BL6NJ_G0036131.1 mouse_genomes_project X 32407755 32440959 - MGP_C57BL6NJ_P0096391 C330007P06Rik protein_coding protein_coding MGP_C57BL6NJ_T0096660.1 MGP_C57BL6NJ_G0036228.1 mouse_genomes_project X 50197884 50214552 - MGP_C57BL6NJ_P0096660 1700013H16Rik protein_coding protein_coding MGP_C57BL6NJ_T0096869.1 MGP_C57BL6NJ_G0036303.1 mouse_genomes_project X 71222473 71238895 + MGP_C57BL6NJ_P0096869 Zfp275 protein_coding protein_coding MGP_C57BL6NJ_T0096870.1 MGP_C57BL6NJ_G0036303.1 mouse_genomes_project X 71224276 71231654 + Zfp275 protein_coding retained_intron MGP_C57BL6NJ_T0098563.1 MGP_C57BL6NJ_G0036736.1 mouse_genomes_project X 166899049 166904465 - MGP_C57BL6NJ_P0098563 protein_coding protein_coding MGP_C57BL6NJ_T0098564.1 MGP_C57BL6NJ_G0036736.1 mouse_genomes_project X 166899049 166904494 - MGP_C57BL6NJ_P0098564 protein_coding protein_coding MGP_C57BL6NJ_T0098565.1 MGP_C57BL6NJ_G0036736.1 mouse_genomes_project X 166900229 166904837 - MGP_C57BL6NJ_P0098565 protein_coding protein_coding MGP_C57BL6NJ_T0098105.1 MGP_C57BL6NJ_G0036627.1 mouse_genomes_project X 142049192 142060485 + Prps1 protein_coding processed_transcript MGP_C57BL6NJ_T0098106.1 MGP_C57BL6NJ_G0036627.1 mouse_genomes_project X 142049192 142071191 + MGP_C57BL6NJ_P0098106 Prps1 protein_coding protein_coding MGP_C57BL6NJ_T0098134.1 MGP_C57BL6NJ_G0036637.1 mouse_genomes_project X 143383001 143384774 - Gm15294 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0098135.1 MGP_C57BL6NJ_G0036637.1 mouse_genomes_project X 143384043 143384409 - MGP_C57BL6NJ_P0098135 Gm15294 protein_coding protein_coding MGP_C57BL6NJ_T0102344.1 MGP_C57BL6NJ_G0040294.1 mouse_genomes_project X 18746869 18747427 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0016934.1 MGP_C57BL6NJ_G0014979.1 mouse_genomes_project X 76534509 76534840 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017131.1 MGP_C57BL6NJ_G0015176.1 mouse_genomes_project X 112253226 112253498 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100816.1 MGP_C57BL6NJ_G0038862.1 mouse_genomes_project X 128552834 128552941 - Gm25061 snRNA snRNA MGP_C57BL6NJ_T0096411.1 MGP_C57BL6NJ_G0036138.1 mouse_genomes_project X 32709612 32735936 + MGP_C57BL6NJ_P0096411 Nkap protein_coding protein_coding MGP_C57BL6NJ_T0096412.1 MGP_C57BL6NJ_G0036138.1 mouse_genomes_project X 32719090 32725384 + Nkap protein_coding retained_intron MGP_C57BL6NJ_T0103610.1 MGP_C57BL6NJ_G0041402.1 mouse_genomes_project X 137744496 137746411 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097915.1 MGP_C57BL6NJ_G0036568.1 mouse_genomes_project X 135659912 135672737 - MGP_C57BL6NJ_P0097915 Gla protein_coding protein_coding MGP_C57BL6NJ_T0097916.1 MGP_C57BL6NJ_G0036568.1 mouse_genomes_project X 135666900 135671912 - MGP_C57BL6NJ_P0097916 Gla protein_coding protein_coding MGP_C57BL6NJ_T0017212.1 MGP_C57BL6NJ_G0015257.1 mouse_genomes_project X 134092079 134093702 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098188.1 MGP_C57BL6NJ_G0036651.1 mouse_genomes_project X 146130228 146131706 - MGP_C57BL6NJ_P0098188 Mageb16 protein_coding protein_coding MGP_C57BL6NJ_T0017158.1 MGP_C57BL6NJ_G0015203.1 mouse_genomes_project X 117038556 117038946 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012051.1 MGP_C57BL6NJ_G0010136.1 mouse_genomes_project X 165843857 165844113 - Gm23501 misc_RNA misc_RNA MGP_C57BL6NJ_T0016775.1 MGP_C57BL6NJ_G0014820.1 mouse_genomes_project X 42211880 42213413 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097702.1 MGP_C57BL6NJ_G0036497.1 mouse_genomes_project X 105732555 105739238 + MGP_C57BL6NJ_P0097702 Cox7b protein_coding protein_coding MGP_C57BL6NJ_T0097703.1 MGP_C57BL6NJ_G0036497.1 mouse_genomes_project X 105732571 105732985 + Cox7b protein_coding processed_transcript MGP_C57BL6NJ_T0097704.1 MGP_C57BL6NJ_G0036497.1 mouse_genomes_project X 105736178 105738746 + Cox7b protein_coding retained_intron MGP_C57BL6NJ_T0097665.1 MGP_C57BL6NJ_G0036491.1 mouse_genomes_project X 104760866 104766405 + MGP_C57BL6NJ_P0097665 Pbdc1 protein_coding protein_coding MGP_C57BL6NJ_T0097666.1 MGP_C57BL6NJ_G0036491.1 mouse_genomes_project X 104760871 104799582 + MGP_C57BL6NJ_P0097666 Pbdc1 protein_coding protein_coding MGP_C57BL6NJ_T0097667.1 MGP_C57BL6NJ_G0036491.1 mouse_genomes_project X 104760885 104764379 + Pbdc1 protein_coding retained_intron MGP_C57BL6NJ_T0017310.1 MGP_C57BL6NJ_G0015355.1 mouse_genomes_project X 152609292 152609887 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096754.1 MGP_C57BL6NJ_G0036263.1 mouse_genomes_project X 61462391 61467622 + MGP_C57BL6NJ_P0096754 3830417A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0096755.1 MGP_C57BL6NJ_G0036263.1 mouse_genomes_project X 61463191 61466351 + MGP_C57BL6NJ_P0096755 3830417A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0011375.1 MGP_C57BL6NJ_G0009460.1 mouse_genomes_project X 1902806 1902898 - Mir500 miRNA miRNA MGP_C57BL6NJ_T0096689.1 MGP_C57BL6NJ_G0036240.1 mouse_genomes_project X 53486348 53511707 - MGP_C57BL6NJ_P0096689 Mtap7d3 protein_coding protein_coding MGP_C57BL6NJ_T0096690.1 MGP_C57BL6NJ_G0036240.1 mouse_genomes_project X 53498115 53511695 - MGP_C57BL6NJ_P0096690 Mtap7d3 protein_coding protein_coding MGP_C57BL6NJ_T0016719.1 MGP_C57BL6NJ_G0014764.1 mouse_genomes_project X 15873708 15873909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097132.1 MGP_C57BL6NJ_G0036339.1 mouse_genomes_project X 72321568 72323887 - MGP_C57BL6NJ_P0097132 Lage3 protein_coding protein_coding MGP_C57BL6NJ_T0097133.1 MGP_C57BL6NJ_G0036339.1 mouse_genomes_project X 72322453 72323911 - MGP_C57BL6NJ_P0097133 Lage3 protein_coding protein_coding MGP_C57BL6NJ_T0097134.1 MGP_C57BL6NJ_G0036339.1 mouse_genomes_project X 72322454 72323868 - MGP_C57BL6NJ_P0097134 Lage3 protein_coding protein_coding MGP_C57BL6NJ_T0009631.1 MGP_C57BL6NJ_G0007719.1 mouse_genomes_project X 164534462 164536316 - Scml1 lincRNA lincRNA MGP_C57BL6NJ_T0096720.1 MGP_C57BL6NJ_G0036248.1 mouse_genomes_project X 54130947 54214541 + MGP_C57BL6NJ_P0096720 Gm364 protein_coding protein_coding MGP_C57BL6NJ_T0097221.1 MGP_C57BL6NJ_G0036357.1 mouse_genomes_project X 73528239 73539945 - MGP_C57BL6NJ_P0097221 Cmc4 protein_coding protein_coding MGP_C57BL6NJ_T0097222.1 MGP_C57BL6NJ_G0036357.1 mouse_genomes_project X 73528419 73539964 - MGP_C57BL6NJ_P0097222 Cmc4 protein_coding protein_coding MGP_C57BL6NJ_T0097223.1 MGP_C57BL6NJ_G0036357.1 mouse_genomes_project X 73528463 73533306 - MGP_C57BL6NJ_P0097223 Cmc4 protein_coding protein_coding MGP_C57BL6NJ_T0016707.1 MGP_C57BL6NJ_G0014752.1 mouse_genomes_project X 14127354 14127760 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099195.1 MGP_C57BL6NJ_G0037259.1 mouse_genomes_project X 66521316 66521437 - n-R5s7 rRNA rRNA MGP_C57BL6NJ_T0096767.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210153 66259564 + MGP_C57BL6NJ_P0096767 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096768.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210194 66247915 + Fmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096769.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210194 66211698 + Fmr1 protein_coding processed_transcript MGP_C57BL6NJ_T0096770.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210194 66250478 + Fmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096771.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210236 66259564 + MGP_C57BL6NJ_P0096771 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096772.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210414 66259564 + MGP_C57BL6NJ_P0096772 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096773.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210414 66259564 + MGP_C57BL6NJ_P0096773 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096774.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210423 66259564 + MGP_C57BL6NJ_P0096774 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096775.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66210429 66259564 + MGP_C57BL6NJ_P0096775 Fmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096776.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66235819 66247212 + Fmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096777.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66238683 66239357 + Fmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096778.1 MGP_C57BL6NJ_G0036272.1 mouse_genomes_project X 66253451 66254924 + Fmr1 protein_coding retained_intron MGP_C57BL6NJ_T0100829.1 MGP_C57BL6NJ_G0038875.1 mouse_genomes_project X 164858072 164858176 + Gm23794 snRNA snRNA MGP_C57BL6NJ_T0017198.1 MGP_C57BL6NJ_G0015243.1 mouse_genomes_project X 130322505 130323291 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097262.1 MGP_C57BL6NJ_G0036375.1 mouse_genomes_project X 76441264 76446730 - MGP_C57BL6NJ_P0097262 protein_coding protein_coding MGP_C57BL6NJ_T0097499.1 MGP_C57BL6NJ_G0036445.1 mouse_genomes_project X 100107218 100109800 + Gdpd2 protein_coding processed_transcript MGP_C57BL6NJ_T0097500.1 MGP_C57BL6NJ_G0036445.1 mouse_genomes_project X 100107283 100112565 + Gdpd2 protein_coding retained_intron MGP_C57BL6NJ_T0097501.1 MGP_C57BL6NJ_G0036445.1 mouse_genomes_project X 100107287 100116246 + MGP_C57BL6NJ_P0097501 Gdpd2 protein_coding protein_coding MGP_C57BL6NJ_T0097502.1 MGP_C57BL6NJ_G0036445.1 mouse_genomes_project X 100107531 100116246 + MGP_C57BL6NJ_P0097502 Gdpd2 protein_coding protein_coding MGP_C57BL6NJ_T0097503.1 MGP_C57BL6NJ_G0036445.1 mouse_genomes_project X 100113691 100116247 + Gdpd2 protein_coding retained_intron MGP_C57BL6NJ_T0097928.1 MGP_C57BL6NJ_G0036571.1 mouse_genomes_project X 135827658 135830448 - MGP_C57BL6NJ_P0097928 Armcx6 protein_coding protein_coding MGP_C57BL6NJ_T0097929.1 MGP_C57BL6NJ_G0036571.1 mouse_genomes_project X 135827660 135830534 - MGP_C57BL6NJ_P0097929 Armcx6 protein_coding protein_coding MGP_C57BL6NJ_T0097930.1 MGP_C57BL6NJ_G0036571.1 mouse_genomes_project X 135829086 135830464 - Armcx6 protein_coding processed_transcript MGP_C57BL6NJ_T0097931.1 MGP_C57BL6NJ_G0036571.1 mouse_genomes_project X 135829266 135830478 - Armcx6 protein_coding processed_transcript MGP_C57BL6NJ_T0016975.1 MGP_C57BL6NJ_G0015020.1 mouse_genomes_project X 87467209 87467467 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011437.1 MGP_C57BL6NJ_G0009522.1 mouse_genomes_project X 65535974 65536049 - Mir509 miRNA miRNA MGP_C57BL6NJ_T0017026.1 MGP_C57BL6NJ_G0015071.1 mouse_genomes_project X 94459821 94461828 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017027.1 MGP_C57BL6NJ_G0015072.1 mouse_genomes_project X 94506555 94507538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102091.1 MGP_C57BL6NJ_G0040137.1 mouse_genomes_project X 131742155 131742284 - Gm25170 snoRNA snoRNA MGP_C57BL6NJ_T0016687.1 MGP_C57BL6NJ_G0014732.1 mouse_genomes_project X 7982688 7983045 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017081.1 MGP_C57BL6NJ_G0015126.1 mouse_genomes_project X 103117969 103118747 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011398.1 MGP_C57BL6NJ_G0009483.1 mouse_genomes_project X 48758095 48758204 - Mir717 miRNA miRNA MGP_C57BL6NJ_T0102350.1 MGP_C57BL6NJ_G0040298.1 mouse_genomes_project X 103139733 103141256 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102351.1 MGP_C57BL6NJ_G0040298.1 mouse_genomes_project X 103139742 103141678 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0016864.1 MGP_C57BL6NJ_G0014909.1 mouse_genomes_project X 64179614 64180807 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016746.1 MGP_C57BL6NJ_G0014791.1 mouse_genomes_project X 35550433 35550824 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017317.1 MGP_C57BL6NJ_G0015362.1 mouse_genomes_project X 153751389 153752105 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100812.1 MGP_C57BL6NJ_G0038858.1 mouse_genomes_project X 115453238 115453362 - Gm25366 snRNA snRNA MGP_C57BL6NJ_T0097253.1 MGP_C57BL6NJ_G0036369.1 mouse_genomes_project X 75941449 75978269 - MGP_C57BL6NJ_P0097253 Prkx protein_coding protein_coding MGP_C57BL6NJ_T0097254.1 MGP_C57BL6NJ_G0036369.1 mouse_genomes_project X 75951491 75977969 - MGP_C57BL6NJ_P0097254 Prkx protein_coding protein_coding MGP_C57BL6NJ_T0097959.1 MGP_C57BL6NJ_G0036580.1 mouse_genomes_project X 136882748 136887579 + MGP_C57BL6NJ_P0097959 Armcx5 protein_coding protein_coding MGP_C57BL6NJ_T0097964.1 MGP_C57BL6NJ_G0036580.1 mouse_genomes_project X 136882750 136885422 + Armcx5 protein_coding retained_intron MGP_C57BL6NJ_T0098022.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138326014 138389709 - MGP_C57BL6NJ_P0098022 Slc25a53 protein_coding protein_coding MGP_C57BL6NJ_T0098023.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138326020 138389687 - MGP_C57BL6NJ_P0098023 Slc25a53 protein_coding protein_coding MGP_C57BL6NJ_T0098024.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138326020 138339961 - MGP_C57BL6NJ_P0098024 Slc25a53 protein_coding protein_coding MGP_C57BL6NJ_T0098025.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138329865 138339986 - MGP_C57BL6NJ_P0098025 Slc25a53 protein_coding protein_coding MGP_C57BL6NJ_T0098026.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138330007 138340018 - MGP_C57BL6NJ_P0098026 Slc25a53 protein_coding protein_coding MGP_C57BL6NJ_T0098030.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138348966 138381498 - Slc25a53 protein_coding retained_intron MGP_C57BL6NJ_T0098031.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138349003 138389711 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098032.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138350730 138389441 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098033.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138350731 138389681 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098034.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138351499 138366238 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098035.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138363751 138389708 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098036.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138381420 138389433 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0098037.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138383210 138389711 - Slc25a53 protein_coding retained_intron MGP_C57BL6NJ_T0098038.1 MGP_C57BL6NJ_G0036604.1 mouse_genomes_project X 138383819 138389417 - Slc25a53 protein_coding processed_transcript MGP_C57BL6NJ_T0017053.1 MGP_C57BL6NJ_G0015098.1 mouse_genomes_project X 100643376 100643645 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016721.1 MGP_C57BL6NJ_G0014766.1 mouse_genomes_project X 16233996 16234195 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005738.1 MGP_C57BL6NJ_G0004832.1 mouse_genomes_project X 42370025 42426010 - 4930515L19Rik antisense antisense MGP_C57BL6NJ_T0016996.1 MGP_C57BL6NJ_G0015041.1 mouse_genomes_project X 90512543 90513578 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017287.1 MGP_C57BL6NJ_G0015332.1 mouse_genomes_project X 146130574 146131701 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100805.1 MGP_C57BL6NJ_G0038851.1 mouse_genomes_project X 105576311 105576423 + Gm23656 snRNA snRNA MGP_C57BL6NJ_T0102336.1 MGP_C57BL6NJ_G0040290.1 mouse_genomes_project X 5256127 5258065 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102337.1 MGP_C57BL6NJ_G0040290.1 mouse_genomes_project X 5257469 5257960 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0096318.1 MGP_C57BL6NJ_G0036104.1 mouse_genomes_project X 16174459 16243355 - MGP_C57BL6NJ_P0096318 Syn1 protein_coding protein_coding MGP_C57BL6NJ_T0096319.1 MGP_C57BL6NJ_G0036104.1 mouse_genomes_project X 16174463 16243269 - MGP_C57BL6NJ_P0096319 Syn1 protein_coding protein_coding MGP_C57BL6NJ_T0096750.1 MGP_C57BL6NJ_G0036260.1 mouse_genomes_project X 59292745 59301325 + MGP_C57BL6NJ_P0096750 4933402E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0096751.1 MGP_C57BL6NJ_G0036260.1 mouse_genomes_project X 59296388 59301325 + MGP_C57BL6NJ_P0096751 4933402E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0096608.1 MGP_C57BL6NJ_G0036205.1 mouse_genomes_project X 46615490 46616489 - MGP_C57BL6NJ_P0096608 Olfr1324 protein_coding protein_coding MGP_C57BL6NJ_T0017173.1 MGP_C57BL6NJ_G0015218.1 mouse_genomes_project X 120496762 120497618 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009595.1 MGP_C57BL6NJ_G0007701.1 mouse_genomes_project X 103104667 103117577 + Jpx lincRNA lincRNA MGP_C57BL6NJ_T0009596.1 MGP_C57BL6NJ_G0007701.1 mouse_genomes_project X 103104684 103105728 + Jpx lincRNA lincRNA MGP_C57BL6NJ_T0009597.1 MGP_C57BL6NJ_G0007701.1 mouse_genomes_project X 103104877 103114389 + Jpx lincRNA lincRNA MGP_C57BL6NJ_T0009598.1 MGP_C57BL6NJ_G0007701.1 mouse_genomes_project X 103104902 103114110 + Jpx lincRNA lincRNA MGP_C57BL6NJ_T0016811.1 MGP_C57BL6NJ_G0014856.1 mouse_genomes_project X 52763369 52764253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016999.1 MGP_C57BL6NJ_G0015044.1 mouse_genomes_project X 90892619 90892814 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096145.1 MGP_C57BL6NJ_G0036046.1 mouse_genomes_project X 3621590 3624173 + MGP_C57BL6NJ_P0096145 B630019K06Rik protein_coding protein_coding MGP_C57BL6NJ_T0096526.1 MGP_C57BL6NJ_G0036181.1 mouse_genomes_project X 42426105 42427444 + MGP_C57BL6NJ_P0096526 Actrt1 protein_coding protein_coding MGP_C57BL6NJ_T0097463.1 MGP_C57BL6NJ_G0036434.1 mouse_genomes_project X 99204077 99231766 + MGP_C57BL6NJ_P0097463 Tmem28 protein_coding protein_coding MGP_C57BL6NJ_T0103592.1 MGP_C57BL6NJ_G0041384.1 mouse_genomes_project X 84972935 84974072 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097496.1 MGP_C57BL6NJ_G0036444.1 mouse_genomes_project X 99997653 100104655 + MGP_C57BL6NJ_P0097496 Kif4 protein_coding protein_coding MGP_C57BL6NJ_T0097497.1 MGP_C57BL6NJ_G0036444.1 mouse_genomes_project X 100006745 100009093 + Kif4 protein_coding retained_intron MGP_C57BL6NJ_T0097498.1 MGP_C57BL6NJ_G0036444.1 mouse_genomes_project X 100089791 100102091 + Kif4 protein_coding processed_transcript MGP_C57BL6NJ_T0100822.1 MGP_C57BL6NJ_G0038868.1 mouse_genomes_project X 147272380 147272478 - Gm27659 snRNA snRNA MGP_C57BL6NJ_T0016690.1 MGP_C57BL6NJ_G0014735.1 mouse_genomes_project X 8432871 8433684 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096764.1 MGP_C57BL6NJ_G0036270.1 mouse_genomes_project X 64061981 64075191 + MGP_C57BL6NJ_P0096764 Slitrk2 protein_coding protein_coding MGP_C57BL6NJ_T0096765.1 MGP_C57BL6NJ_G0036270.1 mouse_genomes_project X 64065668 64069150 + MGP_C57BL6NJ_P0096765 Slitrk2 protein_coding protein_coding MGP_C57BL6NJ_T0102358.1 MGP_C57BL6NJ_G0040303.1 mouse_genomes_project X 131375278 131376697 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0098621.1 MGP_C57BL6NJ_G0036751.1 mouse_genomes_project X 169316935 169367043 - MGP_C57BL6NJ_P0098621 Ofd1 protein_coding protein_coding MGP_C57BL6NJ_T0096376.1 MGP_C57BL6NJ_G0036125.1 mouse_genomes_project X 31938126 31939305 + MGP_C57BL6NJ_P0096376 protein_coding protein_coding MGP_C57BL6NJ_T0016757.1 MGP_C57BL6NJ_G0014802.1 mouse_genomes_project X 37614800 37616107 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011379.1 MGP_C57BL6NJ_G0009464.1 mouse_genomes_project X 1913579 1913675 - Mir532 miRNA miRNA MGP_C57BL6NJ_T0102360.1 MGP_C57BL6NJ_G0040305.1 mouse_genomes_project X 138345990 138346286 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0096658.1 MGP_C57BL6NJ_G0036226.1 mouse_genomes_project X 50101718 50102119 - MGP_C57BL6NJ_P0096658 Cxx1c protein_coding protein_coding MGP_C57BL6NJ_T0016749.1 MGP_C57BL6NJ_G0014794.1 mouse_genomes_project X 35808507 35809178 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005769.1 MGP_C57BL6NJ_G0004858.1 mouse_genomes_project X 153271410 153324945 - A230072E10Rik antisense antisense MGP_C57BL6NJ_T0005770.1 MGP_C57BL6NJ_G0004858.1 mouse_genomes_project X 153272660 153278722 - A230072E10Rik antisense antisense MGP_C57BL6NJ_T0005771.1 MGP_C57BL6NJ_G0004858.1 mouse_genomes_project X 153272660 153290693 - A230072E10Rik antisense antisense MGP_C57BL6NJ_T0005772.1 MGP_C57BL6NJ_G0004858.1 mouse_genomes_project X 153292619 153321978 - A230072E10Rik antisense antisense MGP_C57BL6NJ_T0098360.1 MGP_C57BL6NJ_G0036681.1 mouse_genomes_project X 154901156 154920197 + Gpr143 protein_coding processed_transcript MGP_C57BL6NJ_T0098361.1 MGP_C57BL6NJ_G0036681.1 mouse_genomes_project X 154901221 154932803 + MGP_C57BL6NJ_P0098361 Gpr143 protein_coding protein_coding MGP_C57BL6NJ_T0098362.1 MGP_C57BL6NJ_G0036681.1 mouse_genomes_project X 154901253 154913251 + Gpr143 protein_coding retained_intron MGP_C57BL6NJ_T0017115.1 MGP_C57BL6NJ_G0015160.1 mouse_genomes_project X 107130162 107131110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019158.1 MGP_C57BL6NJ_G0016192.1 mouse_genomes_project X 172381439 172425773 + Gm15246 processed_transcript processed_transcript MGP_C57BL6NJ_T0019159.1 MGP_C57BL6NJ_G0016192.1 mouse_genomes_project X 172381439 172439044 + Gm15246 processed_transcript processed_transcript MGP_C57BL6NJ_T0097477.1 MGP_C57BL6NJ_G0036437.1 mouse_genomes_project X 99788112 99788985 + MGP_C57BL6NJ_P0097477 Otud6a protein_coding protein_coding MGP_C57BL6NJ_T0103614.1 MGP_C57BL6NJ_G0041406.1 mouse_genomes_project X 155286952 155289648 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098065.1 MGP_C57BL6NJ_G0036615.1 mouse_genomes_project X 140864241 140868521 + MGP_C57BL6NJ_P0098065 Trap1a protein_coding protein_coding MGP_C57BL6NJ_T0017168.1 MGP_C57BL6NJ_G0015213.1 mouse_genomes_project X 118375502 118375853 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097356.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405456 93409017 + Klhl15 protein_coding processed_transcript MGP_C57BL6NJ_T0097357.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405461 93425040 + MGP_C57BL6NJ_P0097357 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097358.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405784 93426363 + MGP_C57BL6NJ_P0097358 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097359.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405787 93448346 + MGP_C57BL6NJ_P0097359 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097360.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405844 93428268 + MGP_C57BL6NJ_P0097360 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097361.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405847 93447575 + Klhl15 protein_coding retained_intron MGP_C57BL6NJ_T0097362.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93405847 93426367 + MGP_C57BL6NJ_P0097362 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097363.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93406168 93448340 + MGP_C57BL6NJ_P0097363 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0097364.1 MGP_C57BL6NJ_G0036408.1 mouse_genomes_project X 93406670 93452538 + MGP_C57BL6NJ_P0097364 Klhl15 protein_coding protein_coding MGP_C57BL6NJ_T0017200.1 MGP_C57BL6NJ_G0015245.1 mouse_genomes_project X 131249376 131250639 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098647.1 MGP_C57BL6NJ_G0036760.1 mouse_genomes_project X 170460700 170865646 - MGP_C57BL6NJ_P0098647 Frmpd4 protein_coding protein_coding MGP_C57BL6NJ_T0098648.1 MGP_C57BL6NJ_G0036760.1 mouse_genomes_project X 170460700 171158410 - MGP_C57BL6NJ_P0098648 Frmpd4 protein_coding protein_coding MGP_C57BL6NJ_T0098649.1 MGP_C57BL6NJ_G0036760.1 mouse_genomes_project X 170460700 171618455 - MGP_C57BL6NJ_P0098649 Frmpd4 protein_coding protein_coding MGP_C57BL6NJ_T0098650.1 MGP_C57BL6NJ_G0036760.1 mouse_genomes_project X 170460704 170908065 - MGP_C57BL6NJ_P0098650 Frmpd4 protein_coding protein_coding MGP_C57BL6NJ_T0096288.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15957901 15981678 + MGP_C57BL6NJ_P0096288 Uba1 protein_coding protein_coding MGP_C57BL6NJ_T0096289.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15957996 15968881 + Uba1 protein_coding processed_transcript MGP_C57BL6NJ_T0096290.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15959002 15967795 + Uba1 protein_coding processed_transcript MGP_C57BL6NJ_T0096291.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15961475 15981678 + MGP_C57BL6NJ_P0096291 Uba1 protein_coding protein_coding MGP_C57BL6NJ_T0096292.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15976654 15979699 + Uba1 protein_coding processed_transcript MGP_C57BL6NJ_T0096293.1 MGP_C57BL6NJ_G0036100.1 mouse_genomes_project X 15979093 15980704 + Uba1 protein_coding processed_transcript MGP_C57BL6NJ_T0096652.1 MGP_C57BL6NJ_G0036222.1 mouse_genomes_project X 49753158 49781289 - MGP_C57BL6NJ_P0096652 Mospd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096653.1 MGP_C57BL6NJ_G0036222.1 mouse_genomes_project X 49755382 49781301 - MGP_C57BL6NJ_P0096653 Mospd1 protein_coding protein_coding MGP_C57BL6NJ_T0096654.1 MGP_C57BL6NJ_G0036222.1 mouse_genomes_project X 49755734 49781289 - MGP_C57BL6NJ_P0096654 Mospd1 protein_coding protein_coding MGP_C57BL6NJ_T0017016.1 MGP_C57BL6NJ_G0015061.1 mouse_genomes_project X 93603943 93604561 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097861.1 MGP_C57BL6NJ_G0036554.1 mouse_genomes_project X 134946627 134971261 - MGP_C57BL6NJ_P0097861 Sytl4 protein_coding protein_coding MGP_C57BL6NJ_T0097862.1 MGP_C57BL6NJ_G0036554.1 mouse_genomes_project X 134955474 134990839 - MGP_C57BL6NJ_P0097862 Sytl4 protein_coding protein_coding MGP_C57BL6NJ_T0097863.1 MGP_C57BL6NJ_G0036554.1 mouse_genomes_project X 134959332 134970017 - Sytl4 protein_coding processed_transcript MGP_C57BL6NJ_T0097864.1 MGP_C57BL6NJ_G0036554.1 mouse_genomes_project X 134961380 134990836 - MGP_C57BL6NJ_P0097864 Sytl4 protein_coding protein_coding MGP_C57BL6NJ_T0019138.1 MGP_C57BL6NJ_G0016182.1 mouse_genomes_project X 135760754 135762655 - B230119M05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0097580.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 100964803 101037569 + MGP_C57BL6NJ_P0097580 Taf1 protein_coding protein_coding MGP_C57BL6NJ_T0097581.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 100964810 101039221 + MGP_C57BL6NJ_P0097581 Taf1 protein_coding protein_coding MGP_C57BL6NJ_T0097582.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 100964828 101037569 + MGP_C57BL6NJ_P0097582 Taf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097583.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 100964828 100982422 + MGP_C57BL6NJ_P0097583 Taf1 protein_coding protein_coding MGP_C57BL6NJ_T0097584.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 100989532 101037569 + Taf1 protein_coding retained_intron MGP_C57BL6NJ_T0097585.1 MGP_C57BL6NJ_G0036460.1 mouse_genomes_project X 101027081 101037106 + Taf1 protein_coding processed_transcript MGP_C57BL6NJ_T0017085.1 MGP_C57BL6NJ_G0015130.1 mouse_genomes_project X 103272448 103273621 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097903.1 MGP_C57BL6NJ_G0036565.1 mouse_genomes_project X 135608976 135613421 - MGP_C57BL6NJ_P0097903 protein_coding protein_coding MGP_C57BL6NJ_T0100765.1 MGP_C57BL6NJ_G0038811.1 mouse_genomes_project X 14577289 14577396 + Gm22783 snRNA snRNA MGP_C57BL6NJ_T0017302.1 MGP_C57BL6NJ_G0015347.1 mouse_genomes_project X 148329485 148329962 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098129.1 MGP_C57BL6NJ_G0036635.1 mouse_genomes_project X 142989511 143216167 + MGP_C57BL6NJ_P0098129 Col4a5 protein_coding protein_coding MGP_C57BL6NJ_T0098130.1 MGP_C57BL6NJ_G0036635.1 mouse_genomes_project X 142989536 143216113 + MGP_C57BL6NJ_P0098130 Col4a5 protein_coding protein_coding MGP_C57BL6NJ_T0098131.1 MGP_C57BL6NJ_G0036635.1 mouse_genomes_project X 143151860 143216167 + MGP_C57BL6NJ_P0098131 Col4a5 protein_coding protein_coding MGP_C57BL6NJ_T0098132.1 MGP_C57BL6NJ_G0036635.1 mouse_genomes_project X 143179805 143202848 + Col4a5 protein_coding processed_transcript MGP_C57BL6NJ_T0011445.1 MGP_C57BL6NJ_G0009530.1 mouse_genomes_project X 71960787 71960875 - Mir718 miRNA miRNA MGP_C57BL6NJ_T0096846.1 MGP_C57BL6NJ_G0036292.1 mouse_genomes_project X 70010653 70029457 - MGP_C57BL6NJ_P0096846 Gabre protein_coding protein_coding MGP_C57BL6NJ_T0096847.1 MGP_C57BL6NJ_G0036292.1 mouse_genomes_project X 70016022 70024418 - Gabre protein_coding processed_transcript MGP_C57BL6NJ_T0096848.1 MGP_C57BL6NJ_G0036292.1 mouse_genomes_project X 70023622 70029457 - Gabre protein_coding retained_intron MGP_C57BL6NJ_T0016985.1 MGP_C57BL6NJ_G0015030.1 mouse_genomes_project X 88237129 88237637 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017358.1 MGP_C57BL6NJ_G0015403.1 mouse_genomes_project X 161682793 161685370 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097320.1 MGP_C57BL6NJ_G0036393.1 mouse_genomes_project X 88759383 88762138 - MGP_C57BL6NJ_P0097320 4930415L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0097977.1 MGP_C57BL6NJ_G0036585.1 mouse_genomes_project X 137264560 137277748 - MGP_C57BL6NJ_P0097977 Nxf3 protein_coding protein_coding MGP_C57BL6NJ_T0097978.1 MGP_C57BL6NJ_G0036585.1 mouse_genomes_project X 137272074 137277735 - MGP_C57BL6NJ_P0097978 Nxf3 protein_coding protein_coding MGP_C57BL6NJ_T0016972.1 MGP_C57BL6NJ_G0015017.1 mouse_genomes_project X 87169596 87169938 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019108.1 MGP_C57BL6NJ_G0016175.1 mouse_genomes_project X 73842547 73845248 - processed_transcript processed_transcript MGP_C57BL6NJ_T0011412.1 MGP_C57BL6NJ_G0009497.1 mouse_genomes_project X 53269885 53269948 - Mir5116 miRNA miRNA MGP_C57BL6NJ_T0017247.1 MGP_C57BL6NJ_G0015292.1 mouse_genomes_project X 139997697 139998940 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100782.1 MGP_C57BL6NJ_G0038828.1 mouse_genomes_project X 53437904 53438010 + Gm23258 snRNA snRNA MGP_C57BL6NJ_T0099193.1 MGP_C57BL6NJ_G0037257.1 mouse_genomes_project X 17120090 17120169 + Gm25553 rRNA rRNA MGP_C57BL6NJ_T0011457.1 MGP_C57BL6NJ_G0009542.1 mouse_genomes_project X 103191648 103191724 - Mir421 miRNA miRNA MGP_C57BL6NJ_T0096662.1 MGP_C57BL6NJ_G0036230.1 mouse_genomes_project X 52800223 52832479 - MGP_C57BL6NJ_P0096662 Gm773 protein_coding protein_coding MGP_C57BL6NJ_T0096663.1 MGP_C57BL6NJ_G0036230.1 mouse_genomes_project X 52811751 52832479 - Gm773 protein_coding processed_transcript MGP_C57BL6NJ_T0017400.1 MGP_C57BL6NJ_G0015445.1 mouse_genomes_project X 171585224 171585557 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016886.1 MGP_C57BL6NJ_G0014931.1 mouse_genomes_project X 68138150 68138666 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097299.1 MGP_C57BL6NJ_G0036385.1 mouse_genomes_project X 84165960 84225780 + MGP_C57BL6NJ_P0097299 Tab3 protein_coding protein_coding MGP_C57BL6NJ_T0097300.1 MGP_C57BL6NJ_G0036385.1 mouse_genomes_project X 84165972 84205404 + MGP_C57BL6NJ_P0097300 Tab3 protein_coding protein_coding MGP_C57BL6NJ_T0097301.1 MGP_C57BL6NJ_G0036385.1 mouse_genomes_project X 84165977 84167564 + Tab3 protein_coding processed_transcript MGP_C57BL6NJ_T0097302.1 MGP_C57BL6NJ_G0036385.1 mouse_genomes_project X 84166088 84205194 + MGP_C57BL6NJ_P0097302 Tab3 protein_coding protein_coding MGP_C57BL6NJ_T0102104.1 MGP_C57BL6NJ_G0040150.1 mouse_genomes_project X 158861437 158861534 - Gm23404 snoRNA snoRNA MGP_C57BL6NJ_T0005759.1 MGP_C57BL6NJ_G0004851.1 mouse_genomes_project X 95544911 95548622 + F630028O10Rik antisense antisense MGP_C57BL6NJ_T0005760.1 MGP_C57BL6NJ_G0004851.1 mouse_genomes_project X 95544951 95548622 + F630028O10Rik antisense antisense MGP_C57BL6NJ_T0097275.1 MGP_C57BL6NJ_G0036379.1 mouse_genomes_project X 77470856 77740197 - MGP_C57BL6NJ_P0097275 Gm7173 protein_coding protein_coding MGP_C57BL6NJ_T0097276.1 MGP_C57BL6NJ_G0036379.1 mouse_genomes_project X 77535576 77565986 - MGP_C57BL6NJ_P0097276 Gm7173 protein_coding protein_coding MGP_C57BL6NJ_T0097277.1 MGP_C57BL6NJ_G0036379.1 mouse_genomes_project X 77615143 77654454 - MGP_C57BL6NJ_P0097277 Gm7173 protein_coding protein_coding MGP_C57BL6NJ_T0097278.1 MGP_C57BL6NJ_G0036379.1 mouse_genomes_project X 77703801 77740197 - MGP_C57BL6NJ_P0097278 Gm7173 protein_coding protein_coding MGP_C57BL6NJ_T0096443.1 MGP_C57BL6NJ_G0036162.1 mouse_genomes_project X 33878434 33936775 - MGP_C57BL6NJ_P0096443 Tmem255a protein_coding protein_coding MGP_C57BL6NJ_T0096444.1 MGP_C57BL6NJ_G0036162.1 mouse_genomes_project X 33879167 33936785 - Tmem255a protein_coding retained_intron MGP_C57BL6NJ_T0096445.1 MGP_C57BL6NJ_G0036162.1 mouse_genomes_project X 33879167 33936785 - MGP_C57BL6NJ_P0096445 Tmem255a protein_coding protein_coding MGP_C57BL6NJ_T0096446.1 MGP_C57BL6NJ_G0036162.1 mouse_genomes_project X 33879167 33936785 - MGP_C57BL6NJ_P0096446 Tmem255a protein_coding protein_coding MGP_C57BL6NJ_T0096447.1 MGP_C57BL6NJ_G0036162.1 mouse_genomes_project X 33897133 33936747 - Tmem255a protein_coding processed_transcript MGP_C57BL6NJ_T0017333.1 MGP_C57BL6NJ_G0015378.1 mouse_genomes_project X 157534044 157534746 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017187.1 MGP_C57BL6NJ_G0015232.1 mouse_genomes_project X 122943935 122944238 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012047.1 MGP_C57BL6NJ_G0010132.1 mouse_genomes_project X 155071899 155072209 - Gm26035 misc_RNA misc_RNA MGP_C57BL6NJ_T0016789.1 MGP_C57BL6NJ_G0014834.1 mouse_genomes_project X 46736586 46736969 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016969.1 MGP_C57BL6NJ_G0015014.1 mouse_genomes_project X 86412667 86413545 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097881.1 MGP_C57BL6NJ_G0036559.1 mouse_genomes_project X 135254312 135313214 - MGP_C57BL6NJ_P0097881 Trmt2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097882.1 MGP_C57BL6NJ_G0036559.1 mouse_genomes_project X 135255068 135313214 - MGP_C57BL6NJ_P0097882 Trmt2b protein_coding protein_coding MGP_C57BL6NJ_T0097883.1 MGP_C57BL6NJ_G0036559.1 mouse_genomes_project X 135255069 135313159 - Trmt2b protein_coding retained_intron MGP_C57BL6NJ_T0097884.1 MGP_C57BL6NJ_G0036559.1 mouse_genomes_project X 135255073 135313152 - MGP_C57BL6NJ_P0097884 Trmt2b protein_coding protein_coding MGP_C57BL6NJ_T0097885.1 MGP_C57BL6NJ_G0036559.1 mouse_genomes_project X 135298752 135313216 - MGP_C57BL6NJ_P0097885 Trmt2b protein_coding protein_coding MGP_C57BL6NJ_T0016703.1 MGP_C57BL6NJ_G0014748.1 mouse_genomes_project X 12807885 12808722 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016900.1 MGP_C57BL6NJ_G0014945.1 mouse_genomes_project X 71942638 71943439 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100828.1 MGP_C57BL6NJ_G0038874.1 mouse_genomes_project X 159483764 159483928 + Gm22666 snRNA snRNA MGP_C57BL6NJ_T0097202.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73227691 73248813 - MGP_C57BL6NJ_P0097202 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097203.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73228606 73248641 - MGP_C57BL6NJ_P0097203 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097204.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73229674 73248746 - MGP_C57BL6NJ_P0097204 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097205.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73230311 73248651 - MGP_C57BL6NJ_P0097205 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097206.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73231523 73248651 - Mpp1 protein_coding processed_transcript MGP_C57BL6NJ_T0097207.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73233794 73235807 - Mpp1 protein_coding retained_intron MGP_C57BL6NJ_T0097208.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73234020 73248651 - MGP_C57BL6NJ_P0097208 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097209.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73239605 73248651 - MGP_C57BL6NJ_P0097209 Mpp1 protein_coding protein_coding MGP_C57BL6NJ_T0097210.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73240797 73248783 - Mpp1 protein_coding retained_intron MGP_C57BL6NJ_T0097211.1 MGP_C57BL6NJ_G0036353.1 mouse_genomes_project X 73243620 73248750 - MGP_C57BL6NJ_P0097211 Mpp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096792.1 MGP_C57BL6NJ_G0036279.1 mouse_genomes_project X 68071653 68090461 - MGP_C57BL6NJ_P0096792 Tmem185a protein_coding protein_coding MGP_C57BL6NJ_T0096793.1 MGP_C57BL6NJ_G0036279.1 mouse_genomes_project X 68072859 68090461 - MGP_C57BL6NJ_P0096793 Tmem185a protein_coding protein_coding MGP_C57BL6NJ_T0096794.1 MGP_C57BL6NJ_G0036279.1 mouse_genomes_project X 68072954 68083460 - Tmem185a protein_coding processed_transcript MGP_C57BL6NJ_T0096795.1 MGP_C57BL6NJ_G0036279.1 mouse_genomes_project X 68074823 68090423 - Tmem185a protein_coding processed_transcript MGP_C57BL6NJ_T0016858.1 MGP_C57BL6NJ_G0014903.1 mouse_genomes_project X 62410421 62410671 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096165.1 MGP_C57BL6NJ_G0036059.1 mouse_genomes_project X 4662602 4663155 + MGP_C57BL6NJ_P0096165 4930557A04Rik protein_coding protein_coding MGP_C57BL6NJ_T0100826.1 MGP_C57BL6NJ_G0038872.1 mouse_genomes_project X 155783931 155784038 - Gm25793 snRNA snRNA MGP_C57BL6NJ_T0096705.1 MGP_C57BL6NJ_G0036245.1 mouse_genomes_project X 53928660 53940296 + MGP_C57BL6NJ_P0096705 Cd40lg protein_coding protein_coding MGP_C57BL6NJ_T0097758.1 MGP_C57BL6NJ_G0036515.1 mouse_genomes_project X 108541899 108542787 - MGP_C57BL6NJ_P0097758 Gm379 protein_coding protein_coding MGP_C57BL6NJ_T0017031.1 MGP_C57BL6NJ_G0015076.1 mouse_genomes_project X 95527737 95529157 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017237.1 MGP_C57BL6NJ_G0015282.1 mouse_genomes_project X 138246040 138246458 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009579.1 MGP_C57BL6NJ_G0007688.1 mouse_genomes_project X 74078189 74092286 - Gm14715 lincRNA lincRNA MGP_C57BL6NJ_T0103601.1 MGP_C57BL6NJ_G0041393.1 mouse_genomes_project X 94900159 94900694 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017147.1 MGP_C57BL6NJ_G0015192.1 mouse_genomes_project X 114552985 114554346 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017308.1 MGP_C57BL6NJ_G0015353.1 mouse_genomes_project X 152352221 152354652 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103579.1 MGP_C57BL6NJ_G0041371.1 mouse_genomes_project X 68007055 68007883 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011416.1 MGP_C57BL6NJ_G0009501.1 mouse_genomes_project X 57251392 57251482 - Mir505 miRNA miRNA MGP_C57BL6NJ_T0005777.1 MGP_C57BL6NJ_G0004862.1 mouse_genomes_project X 163178403 163186095 - antisense antisense MGP_C57BL6NJ_T0016799.1 MGP_C57BL6NJ_G0014844.1 mouse_genomes_project X 49720924 49721558 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017161.1 MGP_C57BL6NJ_G0015206.1 mouse_genomes_project X 117709940 117711723 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016688.1 MGP_C57BL6NJ_G0014733.1 mouse_genomes_project X 8291262 8292489 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096588.1 MGP_C57BL6NJ_G0036197.1 mouse_genomes_project X 45031872 45062658 - MGP_C57BL6NJ_P0096588 Gm595 protein_coding protein_coding MGP_C57BL6NJ_T0017284.1 MGP_C57BL6NJ_G0015329.1 mouse_genomes_project X 145888347 145888677 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097638.1 MGP_C57BL6NJ_G0036476.1 mouse_genomes_project X 102363699 102369417 - MGP_C57BL6NJ_P0097638 protein_coding protein_coding MGP_C57BL6NJ_T0097639.1 MGP_C57BL6NJ_G0036476.1 mouse_genomes_project X 102366379 102370199 - MGP_C57BL6NJ_P0097639 protein_coding protein_coding MGP_C57BL6NJ_T0098388.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561335 157564651 - MGP_C57BL6NJ_P0098388 Sat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098389.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561335 157564651 - MGP_C57BL6NJ_P0098389 Sat1 protein_coding protein_coding MGP_C57BL6NJ_T0098390.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561509 157564534 - Sat1 protein_coding retained_intron MGP_C57BL6NJ_T0098391.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561509 157563106 - Sat1 protein_coding retained_intron MGP_C57BL6NJ_T0098392.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561509 157562263 - Sat1 protein_coding retained_intron MGP_C57BL6NJ_T0098393.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157561518 157564547 - MGP_C57BL6NJ_P0098393 Sat1 protein_coding protein_coding MGP_C57BL6NJ_T0098394.1 MGP_C57BL6NJ_G0036696.1 mouse_genomes_project X 157563656 157564529 - Sat1 protein_coding retained_intron MGP_C57BL6NJ_T0017201.1 MGP_C57BL6NJ_G0015246.1 mouse_genomes_project X 131363788 131364464 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100815.1 MGP_C57BL6NJ_G0038861.1 mouse_genomes_project X 127957050 127957155 + Gm22139 snRNA snRNA MGP_C57BL6NJ_T0096122.1 MGP_C57BL6NJ_G0036041.1 mouse_genomes_project X 2932520 2941066 - MGP_C57BL6NJ_P0096122 Ebp protein_coding protein_coding MGP_C57BL6NJ_T0096123.1 MGP_C57BL6NJ_G0036041.1 mouse_genomes_project X 2932522 2934366 - Ebp protein_coding retained_intron MGP_C57BL6NJ_T0096124.1 MGP_C57BL6NJ_G0036041.1 mouse_genomes_project X 2933939 2940954 - MGP_C57BL6NJ_P0096124 Ebp protein_coding protein_coding MGP_C57BL6NJ_T0096125.1 MGP_C57BL6NJ_G0036041.1 mouse_genomes_project X 2937512 2940452 - Ebp protein_coding retained_intron MGP_C57BL6NJ_T0096918.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71684800 71692735 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096919.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71684800 71692735 - MGP_C57BL6NJ_P0096919 Idh3g protein_coding protein_coding MGP_C57BL6NJ_T0096920.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71684880 71686735 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096921.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71685507 71686534 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096922.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71685873 71686650 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096923.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71685911 71692460 - Idh3g protein_coding processed_transcript MGP_C57BL6NJ_T0096924.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71686258 71687545 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096925.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71686425 71688057 - Idh3g protein_coding retained_intron MGP_C57BL6NJ_T0096926.1 MGP_C57BL6NJ_G0036316.1 mouse_genomes_project X 71686816 71688206 - Idh3g protein_coding processed_transcript MGP_C57BL6NJ_T0011462.1 MGP_C57BL6NJ_G0009547.1 mouse_genomes_project X 105041368 105041456 - Mir384 miRNA miRNA MGP_C57BL6NJ_T0016819.1 MGP_C57BL6NJ_G0014864.1 mouse_genomes_project X 54941078 54941402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016656.1 MGP_C57BL6NJ_G0014701.1 mouse_genomes_project X 2762438 2762949 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098399.1 MGP_C57BL6NJ_G0036698.1 mouse_genomes_project X 157678384 157693478 - MGP_C57BL6NJ_P0098399 Prdx4 protein_coding protein_coding MGP_C57BL6NJ_T0098400.1 MGP_C57BL6NJ_G0036698.1 mouse_genomes_project X 157682898 157695766 - MGP_C57BL6NJ_P0098400 Prdx4 protein_coding protein_coding MGP_C57BL6NJ_T0098401.1 MGP_C57BL6NJ_G0036698.1 mouse_genomes_project X 157691802 157693485 - Prdx4 protein_coding processed_transcript MGP_C57BL6NJ_T0017357.1 MGP_C57BL6NJ_G0015402.1 mouse_genomes_project X 161669023 161669757 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005756.1 MGP_C57BL6NJ_G0004848.1 mouse_genomes_project X 84330931 84338796 + Gm14764 antisense antisense MGP_C57BL6NJ_T0016763.1 MGP_C57BL6NJ_G0014808.1 mouse_genomes_project X 39334088 39334746 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095973.1 MGP_C57BL6NJ_G0036011.1 mouse_genomes_project X 2283993 2295658 - MGP_C57BL6NJ_P0095973 Ccdc22 protein_coding protein_coding MGP_C57BL6NJ_T0095974.1 MGP_C57BL6NJ_G0036011.1 mouse_genomes_project X 2283994 2287464 - Ccdc22 protein_coding retained_intron MGP_C57BL6NJ_T0016693.1 MGP_C57BL6NJ_G0014738.1 mouse_genomes_project X 9400544 9401410 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016948.1 MGP_C57BL6NJ_G0014993.1 mouse_genomes_project X 78970840 78971065 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102075.1 MGP_C57BL6NJ_G0040121.1 mouse_genomes_project X 76725893 76726027 - Gm22843 snoRNA snoRNA MGP_C57BL6NJ_T0017208.1 MGP_C57BL6NJ_G0015253.1 mouse_genomes_project X 133074747 133075649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103600.1 MGP_C57BL6NJ_G0041392.1 mouse_genomes_project X 94025159 94028223 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016692.1 MGP_C57BL6NJ_G0014737.1 mouse_genomes_project X 9010912 9013242 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016722.1 MGP_C57BL6NJ_G0014767.1 mouse_genomes_project X 16487325 16488122 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096435.1 MGP_C57BL6NJ_G0036158.1 mouse_genomes_project X 33751305 33759853 - MGP_C57BL6NJ_P0096435 Rhox11 protein_coding protein_coding MGP_C57BL6NJ_T0100785.1 MGP_C57BL6NJ_G0038831.1 mouse_genomes_project X 55996244 55996338 + Gm26487 snRNA snRNA MGP_C57BL6NJ_T0017134.1 MGP_C57BL6NJ_G0015179.1 mouse_genomes_project X 112625215 112626123 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103586.1 MGP_C57BL6NJ_G0041378.1 mouse_genomes_project X 74430841 74431966 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098126.1 MGP_C57BL6NJ_G0036634.1 mouse_genomes_project X 142658481 142988203 - MGP_C57BL6NJ_P0098126 Col4a6 protein_coding protein_coding MGP_C57BL6NJ_T0098127.1 MGP_C57BL6NJ_G0036634.1 mouse_genomes_project X 142679247 142700659 - Col4a6 protein_coding processed_transcript MGP_C57BL6NJ_T0098128.1 MGP_C57BL6NJ_G0036634.1 mouse_genomes_project X 142682801 142685686 - Col4a6 protein_coding retained_intron MGP_C57BL6NJ_T0019066.1 MGP_C57BL6NJ_G0016160.1 mouse_genomes_project X 2050297 2052415 + Gm14379 processed_transcript processed_transcript MGP_C57BL6NJ_T0096373.1 MGP_C57BL6NJ_G0036124.1 mouse_genomes_project X 31859465 31873764 + Lonrf3 protein_coding retained_intron MGP_C57BL6NJ_T0096374.1 MGP_C57BL6NJ_G0036124.1 mouse_genomes_project X 31859465 31893499 + MGP_C57BL6NJ_P0096374 Lonrf3 protein_coding protein_coding MGP_C57BL6NJ_T0096375.1 MGP_C57BL6NJ_G0036124.1 mouse_genomes_project X 31860328 31872907 + MGP_C57BL6NJ_P0096375 Lonrf3 protein_coding protein_coding MGP_C57BL6NJ_T0098066.1 MGP_C57BL6NJ_G0036616.1 mouse_genomes_project X 141018312 141092375 + MGP_C57BL6NJ_P0098066 D330045A20Rik protein_coding protein_coding MGP_C57BL6NJ_T0098067.1 MGP_C57BL6NJ_G0036616.1 mouse_genomes_project X 141018316 141034977 + D330045A20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0098068.1 MGP_C57BL6NJ_G0036616.1 mouse_genomes_project X 141018316 141092375 + MGP_C57BL6NJ_P0098068 D330045A20Rik protein_coding protein_coding MGP_C57BL6NJ_T0011439.1 MGP_C57BL6NJ_G0009524.1 mouse_genomes_project X 70015685 70015767 - Mir224 miRNA miRNA MGP_C57BL6NJ_T0096451.1 MGP_C57BL6NJ_G0036165.1 mouse_genomes_project X 34106684 34165085 - MGP_C57BL6NJ_P0096451 Lamp2 protein_coding protein_coding MGP_C57BL6NJ_T0096452.1 MGP_C57BL6NJ_G0036165.1 mouse_genomes_project X 34110389 34165085 - MGP_C57BL6NJ_P0096452 Lamp2 protein_coding protein_coding MGP_C57BL6NJ_T0096453.1 MGP_C57BL6NJ_G0036165.1 mouse_genomes_project X 34128175 34165085 - MGP_C57BL6NJ_P0096453 Lamp2 protein_coding protein_coding MGP_C57BL6NJ_T0096454.1 MGP_C57BL6NJ_G0036165.1 mouse_genomes_project X 34138279 34151640 - Lamp2 protein_coding retained_intron MGP_C57BL6NJ_T0096455.1 MGP_C57BL6NJ_G0036165.1 mouse_genomes_project X 34161361 34165045 - Lamp2 protein_coding processed_transcript MGP_C57BL6NJ_T0096756.1 MGP_C57BL6NJ_G0036264.1 mouse_genomes_project X 61564953 61577055 - MGP_C57BL6NJ_P0096756 Slitrk4 protein_coding protein_coding MGP_C57BL6NJ_T0096757.1 MGP_C57BL6NJ_G0036264.1 mouse_genomes_project X 61569835 61577038 - MGP_C57BL6NJ_P0096757 Slitrk4 protein_coding protein_coding MGP_C57BL6NJ_T0096758.1 MGP_C57BL6NJ_G0036264.1 mouse_genomes_project X 61572786 61575881 - MGP_C57BL6NJ_P0096758 Slitrk4 protein_coding protein_coding MGP_C57BL6NJ_T0097996.1 MGP_C57BL6NJ_G0036593.1 mouse_genomes_project X 137775583 137812951 + MGP_C57BL6NJ_P0097996 Kir3dl2 protein_coding protein_coding MGP_C57BL6NJ_T0102093.1 MGP_C57BL6NJ_G0040139.1 mouse_genomes_project X 133484698 133484829 - Gm23768 snoRNA snoRNA MGP_C57BL6NJ_T0096534.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44068739 44123477 + MGP_C57BL6NJ_P0096534 Ocrl protein_coding protein_coding MGP_C57BL6NJ_T0096535.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44068790 44114667 + MGP_C57BL6NJ_P0096535 Ocrl protein_coding protein_coding MGP_C57BL6NJ_T0096536.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44068807 44114650 + Ocrl protein_coding processed_transcript MGP_C57BL6NJ_T0096537.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44068819 44071999 + Ocrl protein_coding retained_intron MGP_C57BL6NJ_T0096538.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44069385 44123482 + MGP_C57BL6NJ_P0096538 Ocrl protein_coding protein_coding MGP_C57BL6NJ_T0096539.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44087611 44088754 + Ocrl protein_coding retained_intron MGP_C57BL6NJ_T0096540.1 MGP_C57BL6NJ_G0036183.1 mouse_genomes_project X 44095982 44106048 + MGP_C57BL6NJ_P0096540 Ocrl protein_coding protein_coding MGP_C57BL6NJ_T0017279.1 MGP_C57BL6NJ_G0015324.1 mouse_genomes_project X 145702306 145704170 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097476.1 MGP_C57BL6NJ_G0036436.1 mouse_genomes_project X 99761969 99771719 - MGP_C57BL6NJ_P0097476 Awat2 protein_coding protein_coding MGP_C57BL6NJ_T0098069.1 MGP_C57BL6NJ_G0036617.1 mouse_genomes_project X 141099507 141220749 + MGP_C57BL6NJ_P0098069 Rnf128 protein_coding protein_coding MGP_C57BL6NJ_T0098070.1 MGP_C57BL6NJ_G0036617.1 mouse_genomes_project X 141156489 141220756 + MGP_C57BL6NJ_P0098070 Rnf128 protein_coding protein_coding MGP_C57BL6NJ_T0098071.1 MGP_C57BL6NJ_G0036617.1 mouse_genomes_project X 141157236 141219352 + Rnf128 protein_coding processed_transcript MGP_C57BL6NJ_T0009585.1 MGP_C57BL6NJ_G0007693.1 mouse_genomes_project X 93625288 93631486 + Gm14827 lincRNA lincRNA MGP_C57BL6NJ_T0005764.1 MGP_C57BL6NJ_G0004854.1 mouse_genomes_project X 102991487 102992700 - Gm26952 antisense antisense MGP_C57BL6NJ_T0097003.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71950864 71960857 - MGP_C57BL6NJ_P0097003 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097004.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71950868 71960854 - MGP_C57BL6NJ_P0097004 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097005.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71950876 71960854 - MGP_C57BL6NJ_P0097005 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097006.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71950876 71960854 - MGP_C57BL6NJ_P0097006 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097007.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71951744 71960765 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0097008.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71951744 71960765 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0097009.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71951909 71960852 - MGP_C57BL6NJ_P0097009 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097010.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71952296 71955273 - MGP_C57BL6NJ_P0097010 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097011.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71952310 71956880 - MGP_C57BL6NJ_P0097011 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097012.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71952378 71960684 - MGP_C57BL6NJ_P0097012 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097013.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71952378 71960684 - MGP_C57BL6NJ_P0097013 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097014.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71953486 71957927 - MGP_C57BL6NJ_P0097014 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097015.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71954068 71959435 - MGP_C57BL6NJ_P0097015 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097016.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71957938 71959590 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0097017.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71957938 71960030 - MGP_C57BL6NJ_P0097017 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097018.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959125 71960112 - MGP_C57BL6NJ_P0097018 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097019.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959167 71959883 - MGP_C57BL6NJ_P0097019 Irak1 protein_coding protein_coding MGP_C57BL6NJ_T0097020.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959176 71960666 - Irak1 protein_coding processed_transcript MGP_C57BL6NJ_T0097021.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959556 71960747 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0097022.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959571 71960315 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0097023.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71959684 71960447 - Irak1 protein_coding processed_transcript MGP_C57BL6NJ_T0097024.1 MGP_C57BL6NJ_G0036325.1 mouse_genomes_project X 71960033 71960770 - Irak1 protein_coding retained_intron MGP_C57BL6NJ_T0011441.1 MGP_C57BL6NJ_G0009526.1 mouse_genomes_project X 70363073 70363180 - Mir767 miRNA miRNA MGP_C57BL6NJ_T0016666.1 MGP_C57BL6NJ_G0014711.1 mouse_genomes_project X 3818715 3819506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012029.1 MGP_C57BL6NJ_G0010114.1 mouse_genomes_project X 103081764 103081890 - Gm27927 misc_RNA misc_RNA MGP_C57BL6NJ_T0097282.1 MGP_C57BL6NJ_G0036381.1 mouse_genomes_project X 79791737 79823330 - MGP_C57BL6NJ_P0097282 4930595M18Rik protein_coding protein_coding MGP_C57BL6NJ_T0103598.1 MGP_C57BL6NJ_G0041390.1 mouse_genomes_project X 90660548 90661467 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103594.1 MGP_C57BL6NJ_G0041386.1 mouse_genomes_project X 85018749 85021395 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100799.1 MGP_C57BL6NJ_G0038845.1 mouse_genomes_project X 100397215 100397279 + Gm27510 snRNA snRNA MGP_C57BL6NJ_T0016712.1 MGP_C57BL6NJ_G0014757.1 mouse_genomes_project X 15135785 15136001 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009633.1 MGP_C57BL6NJ_G0007721.1 mouse_genomes_project X 169561900 169565341 - Gm15226 lincRNA lincRNA MGP_C57BL6NJ_T0098245.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545129 152558324 - MGP_C57BL6NJ_P0098245 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098246.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545129 152558177 - MGP_C57BL6NJ_P0098246 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098247.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545133 152558140 - MGP_C57BL6NJ_P0098247 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098248.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545133 152558140 - MGP_C57BL6NJ_P0098248 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098249.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545133 152558177 - MGP_C57BL6NJ_P0098249 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098250.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152545251 152555840 - MGP_C57BL6NJ_P0098250 Tro protein_coding protein_coding MGP_C57BL6NJ_T0098251.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152548987 152551469 - Tro protein_coding retained_intron MGP_C57BL6NJ_T0098252.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152549140 152558140 - MGP_C57BL6NJ_P0098252 Tro protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098253.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152549264 152551518 - Tro protein_coding retained_intron MGP_C57BL6NJ_T0098254.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152550980 152552759 - Tro protein_coding retained_intron MGP_C57BL6NJ_T0098255.1 MGP_C57BL6NJ_G0036663.1 mouse_genomes_project X 152553297 152558113 - MGP_C57BL6NJ_P0098255 Tro protein_coding protein_coding MGP_C57BL6NJ_T0017233.1 MGP_C57BL6NJ_G0015278.1 mouse_genomes_project X 137829013 137829404 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011400.1 MGP_C57BL6NJ_G0009485.1 mouse_genomes_project X 49100650 49100741 - Mir92-2 miRNA miRNA MGP_C57BL6NJ_T0097839.1 MGP_C57BL6NJ_G0036546.1 mouse_genomes_project X 128027183 128028789 + MGP_C57BL6NJ_P0097839 4921511C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097849.1 MGP_C57BL6NJ_G0036550.1 mouse_genomes_project X 134583067 134693122 - MGP_C57BL6NJ_P0097849 Pcdh19 protein_coding protein_coding MGP_C57BL6NJ_T0097850.1 MGP_C57BL6NJ_G0036550.1 mouse_genomes_project X 134583082 134691400 - MGP_C57BL6NJ_P0097850 Pcdh19 protein_coding protein_coding MGP_C57BL6NJ_T0097851.1 MGP_C57BL6NJ_G0036550.1 mouse_genomes_project X 134583086 134690029 - MGP_C57BL6NJ_P0097851 Pcdh19 protein_coding protein_coding MGP_C57BL6NJ_T0097852.1 MGP_C57BL6NJ_G0036550.1 mouse_genomes_project X 134583087 134588219 - MGP_C57BL6NJ_P0097852 Pcdh19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097853.1 MGP_C57BL6NJ_G0036550.1 mouse_genomes_project X 134684645 134689127 - Pcdh19 protein_coding processed_transcript MGP_C57BL6NJ_T0102067.1 MGP_C57BL6NJ_G0040113.1 mouse_genomes_project X 68341120 68341252 + Gm22785 snoRNA snoRNA MGP_C57BL6NJ_T0017076.1 MGP_C57BL6NJ_G0015121.1 mouse_genomes_project X 102892460 102893325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096664.1 MGP_C57BL6NJ_G0036231.1 mouse_genomes_project X 53005337 53022207 + MGP_C57BL6NJ_P0096664 Zfp449 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096429.1 MGP_C57BL6NJ_G0036154.1 mouse_genomes_project X 33552529 33554804 - MGP_C57BL6NJ_P0096429 protein_coding protein_coding MGP_C57BL6NJ_T0103615.1 MGP_C57BL6NJ_G0041407.1 mouse_genomes_project X 156473905 156477103 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097636.1 MGP_C57BL6NJ_G0036474.1 mouse_genomes_project X 102249576 102255960 + MGP_C57BL6NJ_P0097636 1700031F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0017386.1 MGP_C57BL6NJ_G0015431.1 mouse_genomes_project X 168929701 168930089 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098669.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 172768023 173079332 + MGP_C57BL6NJ_P0098669 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098670.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 172768023 173079336 + MGP_C57BL6NJ_P0098670 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098674.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 172908871 173079336 + MGP_C57BL6NJ_P0098674 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098675.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 172958649 173079335 + MGP_C57BL6NJ_P0098675 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098676.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 172958691 173079100 + MGP_C57BL6NJ_P0098676 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098677.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173005820 173079336 + MGP_C57BL6NJ_P0098677 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098678.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173005820 173078284 + MGP_C57BL6NJ_P0098678 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0098679.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173006344 173056333 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098680.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173053958 173067715 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098681.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173053958 173067715 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098682.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173056332 173067715 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098683.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173056332 173067716 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098684.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173056332 173067715 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098685.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173056332 173067715 + Mid1 protein_coding processed_transcript MGP_C57BL6NJ_T0098687.1 MGP_C57BL6NJ_G0036765.1 mouse_genomes_project X 173064784 173079335 + MGP_C57BL6NJ_P0098687 Mid1 protein_coding protein_coding MGP_C57BL6NJ_T0103591.1 MGP_C57BL6NJ_G0041383.1 mouse_genomes_project X 76246043 76253234 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096261.1 MGP_C57BL6NJ_G0036091.1 mouse_genomes_project X 13620886 13669267 - 4930578C19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0096262.1 MGP_C57BL6NJ_G0036091.1 mouse_genomes_project X 13624432 13669241 - MGP_C57BL6NJ_P0096262 4930578C19Rik protein_coding protein_coding MGP_C57BL6NJ_T0017095.1 MGP_C57BL6NJ_G0015140.1 mouse_genomes_project X 104711902 104712683 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016654.1 MGP_C57BL6NJ_G0014699.1 mouse_genomes_project X 2666499 2667212 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098321.1 MGP_C57BL6NJ_G0036672.1 mouse_genomes_project X 154022747 154025833 + MGP_C57BL6NJ_P0098321 Hsd17b10 protein_coding protein_coding MGP_C57BL6NJ_T0098322.1 MGP_C57BL6NJ_G0036672.1 mouse_genomes_project X 154022747 154025833 + MGP_C57BL6NJ_P0098322 Hsd17b10 protein_coding protein_coding MGP_C57BL6NJ_T0098323.1 MGP_C57BL6NJ_G0036672.1 mouse_genomes_project X 154023051 154025833 + Hsd17b10 protein_coding processed_transcript MGP_C57BL6NJ_T0098324.1 MGP_C57BL6NJ_G0036672.1 mouse_genomes_project X 154024787 154025833 + Hsd17b10 protein_coding retained_intron MGP_C57BL6NJ_T0016939.1 MGP_C57BL6NJ_G0014984.1 mouse_genomes_project X 76861080 76862064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103584.1 MGP_C57BL6NJ_G0041376.1 mouse_genomes_project X 73596571 73626342 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016909.1 MGP_C57BL6NJ_G0014954.1 mouse_genomes_project X 73268978 73269185 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017203.1 MGP_C57BL6NJ_G0015248.1 mouse_genomes_project X 131411820 131412262 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097709.1 MGP_C57BL6NJ_G0036499.1 mouse_genomes_project X 105866883 105867302 + Tlr13 protein_coding retained_intron MGP_C57BL6NJ_T0097710.1 MGP_C57BL6NJ_G0036499.1 mouse_genomes_project X 105866908 105885397 + MGP_C57BL6NJ_P0097710 Tlr13 protein_coding protein_coding MGP_C57BL6NJ_T0097633.1 MGP_C57BL6NJ_G0036473.1 mouse_genomes_project X 102224016 102228301 + MGP_C57BL6NJ_P0097633 Dmrtc1b protein_coding protein_coding MGP_C57BL6NJ_T0097634.1 MGP_C57BL6NJ_G0036473.1 mouse_genomes_project X 102224016 102228301 + MGP_C57BL6NJ_P0097634 Dmrtc1b protein_coding protein_coding MGP_C57BL6NJ_T0097635.1 MGP_C57BL6NJ_G0036473.1 mouse_genomes_project X 102224199 102228301 + MGP_C57BL6NJ_P0097635 Dmrtc1b protein_coding protein_coding MGP_C57BL6NJ_T0017145.1 MGP_C57BL6NJ_G0015190.1 mouse_genomes_project X 114094960 114096485 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098270.1 MGP_C57BL6NJ_G0036666.1 mouse_genomes_project X 152984018 153034000 + MGP_C57BL6NJ_P0098270 Fgd1 protein_coding protein_coding MGP_C57BL6NJ_T0098271.1 MGP_C57BL6NJ_G0036666.1 mouse_genomes_project X 152985038 153034000 + MGP_C57BL6NJ_P0098271 Fgd1 protein_coding protein_coding MGP_C57BL6NJ_T0098272.1 MGP_C57BL6NJ_G0036666.1 mouse_genomes_project X 153009652 153011938 + Fgd1 protein_coding retained_intron MGP_C57BL6NJ_T0098273.1 MGP_C57BL6NJ_G0036666.1 mouse_genomes_project X 153030588 153031660 + Fgd1 protein_coding retained_intron MGP_C57BL6NJ_T0096624.1 MGP_C57BL6NJ_G0036211.1 mouse_genomes_project X 47670341 47971315 - MGP_C57BL6NJ_P0096624 Hs6st2 protein_coding protein_coding MGP_C57BL6NJ_T0096625.1 MGP_C57BL6NJ_G0036211.1 mouse_genomes_project X 47670341 47971468 - MGP_C57BL6NJ_P0096625 Hs6st2 protein_coding protein_coding MGP_C57BL6NJ_T0096626.1 MGP_C57BL6NJ_G0036211.1 mouse_genomes_project X 47966394 47970960 - Hs6st2 protein_coding retained_intron MGP_C57BL6NJ_T0096627.1 MGP_C57BL6NJ_G0036211.1 mouse_genomes_project X 47969603 47970177 - Hs6st2 protein_coding processed_transcript MGP_C57BL6NJ_T0096628.1 MGP_C57BL6NJ_G0036211.1 mouse_genomes_project X 47969789 47970698 - Hs6st2 protein_coding processed_transcript MGP_C57BL6NJ_T0098511.1 MGP_C57BL6NJ_G0036722.1 mouse_genomes_project X 164426722 164493049 + MGP_C57BL6NJ_P0098511 Rai2 protein_coding protein_coding MGP_C57BL6NJ_T0098512.1 MGP_C57BL6NJ_G0036722.1 mouse_genomes_project X 164427280 164493051 + MGP_C57BL6NJ_P0098512 Rai2 protein_coding protein_coding MGP_C57BL6NJ_T0016913.1 MGP_C57BL6NJ_G0014958.1 mouse_genomes_project X 73619037 73619323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016676.1 MGP_C57BL6NJ_G0014721.1 mouse_genomes_project X 6544208 6544424 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096599.1 MGP_C57BL6NJ_G0036201.1 mouse_genomes_project X 45931821 45932781 - MGP_C57BL6NJ_P0096599 Olfr1321 protein_coding protein_coding MGP_C57BL6NJ_T0016871.1 MGP_C57BL6NJ_G0014916.1 mouse_genomes_project X 65220900 65221463 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005743.1 MGP_C57BL6NJ_G0004836.1 mouse_genomes_project X 53033314 53039931 - antisense antisense MGP_C57BL6NJ_T0096001.1 MGP_C57BL6NJ_G0036017.1 mouse_genomes_project X 2387871 2403263 + MGP_C57BL6NJ_P0096001 Gpkow protein_coding protein_coding MGP_C57BL6NJ_T0096002.1 MGP_C57BL6NJ_G0036017.1 mouse_genomes_project X 2394233 2401019 + MGP_C57BL6NJ_P0096002 Gpkow protein_coding protein_coding MGP_C57BL6NJ_T0096003.1 MGP_C57BL6NJ_G0036017.1 mouse_genomes_project X 2396581 2401208 + Gpkow protein_coding retained_intron MGP_C57BL6NJ_T0009572.1 MGP_C57BL6NJ_G0007683.1 mouse_genomes_project X 52971567 52974862 + 1600025M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0009573.1 MGP_C57BL6NJ_G0007683.1 mouse_genomes_project X 52971625 52973722 + 1600025M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0009632.1 MGP_C57BL6NJ_G0007720.1 mouse_genomes_project X 164538094 164550067 - Gm15205 lincRNA lincRNA MGP_C57BL6NJ_T0096250.1 MGP_C57BL6NJ_G0036086.1 mouse_genomes_project X 12037631 12063301 - MGP_C57BL6NJ_P0096250 Ndp protein_coding protein_coding MGP_C57BL6NJ_T0095997.1 MGP_C57BL6NJ_G0036015.1 mouse_genomes_project X 2355723 2358866 - MGP_C57BL6NJ_P0095997 Plp2 protein_coding protein_coding MGP_C57BL6NJ_T0095998.1 MGP_C57BL6NJ_G0036015.1 mouse_genomes_project X 2356655 2358789 - Plp2 protein_coding retained_intron MGP_C57BL6NJ_T0017334.1 MGP_C57BL6NJ_G0015379.1 mouse_genomes_project X 157582654 157583418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016744.1 MGP_C57BL6NJ_G0014789.1 mouse_genomes_project X 35001877 35002198 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102089.1 MGP_C57BL6NJ_G0040135.1 mouse_genomes_project X 127509909 127510032 + Gm23586 snoRNA snoRNA MGP_C57BL6NJ_T0017087.1 MGP_C57BL6NJ_G0015132.1 mouse_genomes_project X 103314121 103314839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100804.1 MGP_C57BL6NJ_G0038850.1 mouse_genomes_project X 105515974 105516157 + Gm26020 snRNA snRNA MGP_C57BL6NJ_T0098416.1 MGP_C57BL6NJ_G0036704.1 mouse_genomes_project X 160047405 160050272 - MGP_C57BL6NJ_P0098416 Yy2 protein_coding protein_coding MGP_C57BL6NJ_T0103606.1 MGP_C57BL6NJ_G0041398.1 mouse_genomes_project X 106124378 106149875 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097184.1 MGP_C57BL6NJ_G0036351.1 mouse_genomes_project X 73070828 73196420 - MGP_C57BL6NJ_P0097184 Gab3 protein_coding protein_coding MGP_C57BL6NJ_T0097185.1 MGP_C57BL6NJ_G0036351.1 mouse_genomes_project X 73073524 73079118 - Gab3 protein_coding processed_transcript MGP_C57BL6NJ_T0097186.1 MGP_C57BL6NJ_G0036351.1 mouse_genomes_project X 73094465 73196420 - MGP_C57BL6NJ_P0097186 Gab3 protein_coding protein_coding MGP_C57BL6NJ_T0097187.1 MGP_C57BL6NJ_G0036351.1 mouse_genomes_project X 73094638 73196284 - MGP_C57BL6NJ_P0097187 Gab3 protein_coding protein_coding MGP_C57BL6NJ_T0097188.1 MGP_C57BL6NJ_G0036351.1 mouse_genomes_project X 73094640 73202412 - Gab3 protein_coding processed_transcript MGP_C57BL6NJ_T0016979.1 MGP_C57BL6NJ_G0015024.1 mouse_genomes_project X 87694190 87695001 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017174.1 MGP_C57BL6NJ_G0015219.1 mouse_genomes_project X 120558112 120558589 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017361.1 MGP_C57BL6NJ_G0015406.1 mouse_genomes_project X 162187332 162187895 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017328.1 MGP_C57BL6NJ_G0015373.1 mouse_genomes_project X 156516422 156517021 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097932.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135888998 135892379 - MGP_C57BL6NJ_P0097932 Armcx2 protein_coding protein_coding MGP_C57BL6NJ_T0097933.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135889000 135894075 - MGP_C57BL6NJ_P0097933 Armcx2 protein_coding protein_coding MGP_C57BL6NJ_T0097934.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135889000 135893850 - MGP_C57BL6NJ_P0097934 Armcx2 protein_coding protein_coding MGP_C57BL6NJ_T0097935.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135889000 135894075 - MGP_C57BL6NJ_P0097935 Armcx2 protein_coding protein_coding MGP_C57BL6NJ_T0097936.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135891338 135892365 - Armcx2 protein_coding processed_transcript MGP_C57BL6NJ_T0097937.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135892113 135892796 - Armcx2 protein_coding processed_transcript MGP_C57BL6NJ_T0097938.1 MGP_C57BL6NJ_G0036572.1 mouse_genomes_project X 135892740 135893815 - Armcx2 protein_coding processed_transcript MGP_C57BL6NJ_T0017332.1 MGP_C57BL6NJ_G0015377.1 mouse_genomes_project X 157523855 157524485 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009553.1 MGP_C57BL6NJ_G0007670.1 mouse_genomes_project X 7334164 7349296 - Gm14635 lincRNA lincRNA MGP_C57BL6NJ_T0009554.1 MGP_C57BL6NJ_G0007670.1 mouse_genomes_project X 7335019 7339605 - Gm14635 lincRNA lincRNA MGP_C57BL6NJ_T0016793.1 MGP_C57BL6NJ_G0014838.1 mouse_genomes_project X 47512917 47513606 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096028.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466037 2469549 + Tfe3 protein_coding retained_intron MGP_C57BL6NJ_T0096029.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466063 2470245 + Tfe3 protein_coding processed_transcript MGP_C57BL6NJ_T0096030.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466135 2478678 + MGP_C57BL6NJ_P0096030 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096031.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466141 2478675 + MGP_C57BL6NJ_P0096031 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096032.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466153 2478677 + MGP_C57BL6NJ_P0096032 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096033.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466172 2478675 + MGP_C57BL6NJ_P0096033 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096034.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466174 2478677 + Tfe3 protein_coding retained_intron MGP_C57BL6NJ_T0096035.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2466244 2478678 + MGP_C57BL6NJ_P0096035 Tfe3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096036.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2467420 2470270 + MGP_C57BL6NJ_P0096036 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096037.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2467436 2478677 + MGP_C57BL6NJ_P0096037 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096038.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2467518 2478673 + MGP_C57BL6NJ_P0096038 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096039.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2467564 2478675 + MGP_C57BL6NJ_P0096039 Tfe3 protein_coding protein_coding MGP_C57BL6NJ_T0096040.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2468129 2478673 + Tfe3 protein_coding retained_intron MGP_C57BL6NJ_T0096041.1 MGP_C57BL6NJ_G0036021.1 mouse_genomes_project X 2472907 2474796 + Tfe3 protein_coding retained_intron MGP_C57BL6NJ_T0100776.1 MGP_C57BL6NJ_G0038822.1 mouse_genomes_project X 41856151 41856258 - Gm25078 snRNA snRNA MGP_C57BL6NJ_T0005746.1 MGP_C57BL6NJ_G0004839.1 mouse_genomes_project X 57803923 57808320 + Gm14662 antisense antisense MGP_C57BL6NJ_T0017276.1 MGP_C57BL6NJ_G0015321.1 mouse_genomes_project X 144145548 144145959 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017035.1 MGP_C57BL6NJ_G0015080.1 mouse_genomes_project X 96246639 96247174 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017162.1 MGP_C57BL6NJ_G0015207.1 mouse_genomes_project X 117872566 117873555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097606.1 MGP_C57BL6NJ_G0036466.1 mouse_genomes_project X 101544028 101548681 - MGP_C57BL6NJ_P0097606 Rgag4 protein_coding protein_coding MGP_C57BL6NJ_T0097607.1 MGP_C57BL6NJ_G0036466.1 mouse_genomes_project X 101544028 101548789 - MGP_C57BL6NJ_P0097607 Rgag4 protein_coding protein_coding MGP_C57BL6NJ_T0097608.1 MGP_C57BL6NJ_G0036466.1 mouse_genomes_project X 101544218 101545085 - Rgag4 protein_coding processed_transcript MGP_C57BL6NJ_T0016854.1 MGP_C57BL6NJ_G0014899.1 mouse_genomes_project X 61330376 61330729 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017343.1 MGP_C57BL6NJ_G0015388.1 mouse_genomes_project X 159896822 159897732 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016986.1 MGP_C57BL6NJ_G0015031.1 mouse_genomes_project X 88251697 88252418 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100814.1 MGP_C57BL6NJ_G0038860.1 mouse_genomes_project X 122393509 122393617 + Gm24846 snRNA snRNA MGP_C57BL6NJ_T0017303.1 MGP_C57BL6NJ_G0015348.1 mouse_genomes_project X 148332122 148333058 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017060.1 MGP_C57BL6NJ_G0015105.1 mouse_genomes_project X 101253883 101254763 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016720.1 MGP_C57BL6NJ_G0014765.1 mouse_genomes_project X 16154884 16155254 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016856.1 MGP_C57BL6NJ_G0014901.1 mouse_genomes_project X 62178625 62180015 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017341.1 MGP_C57BL6NJ_G0015386.1 mouse_genomes_project X 159205368 159205651 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011374.1 MGP_C57BL6NJ_G0009459.1 mouse_genomes_project X 709915 709995 + Gm27360 miRNA miRNA MGP_C57BL6NJ_T0016677.1 MGP_C57BL6NJ_G0014722.1 mouse_genomes_project X 6630594 6630717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016950.1 MGP_C57BL6NJ_G0014995.1 mouse_genomes_project X 79639310 79640033 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095969.1 MGP_C57BL6NJ_G0036010.1 mouse_genomes_project X 2268169 2285428 + MGP_C57BL6NJ_P0095969 Foxp3 protein_coding protein_coding MGP_C57BL6NJ_T0095970.1 MGP_C57BL6NJ_G0036010.1 mouse_genomes_project X 2268186 2285419 + MGP_C57BL6NJ_P0095970 Foxp3 protein_coding protein_coding MGP_C57BL6NJ_T0095971.1 MGP_C57BL6NJ_G0036010.1 mouse_genomes_project X 2268976 2285419 + MGP_C57BL6NJ_P0095971 Foxp3 protein_coding protein_coding MGP_C57BL6NJ_T0095972.1 MGP_C57BL6NJ_G0036010.1 mouse_genomes_project X 2275423 2285428 + MGP_C57BL6NJ_P0095972 Foxp3 protein_coding protein_coding MGP_C57BL6NJ_T0100832.1 MGP_C57BL6NJ_G0038878.1 mouse_genomes_project X 166174461 166174581 - Gm26007 snRNA snRNA MGP_C57BL6NJ_T0017242.1 MGP_C57BL6NJ_G0015287.1 mouse_genomes_project X 138509132 138510802 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016822.1 MGP_C57BL6NJ_G0014867.1 mouse_genomes_project X 55385954 55388506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005767.1 MGP_C57BL6NJ_G0004857.1 mouse_genomes_project X 146036412 146056165 + antisense antisense MGP_C57BL6NJ_T0005768.1 MGP_C57BL6NJ_G0004857.1 mouse_genomes_project X 146050400 146056162 + antisense antisense MGP_C57BL6NJ_T0009555.1 MGP_C57BL6NJ_G0007671.1 mouse_genomes_project X 8283647 8285290 - 2010308F09Rik lincRNA lincRNA MGP_C57BL6NJ_T0009556.1 MGP_C57BL6NJ_G0007671.1 mouse_genomes_project X 8283690 8300668 - 2010308F09Rik lincRNA lincRNA MGP_C57BL6NJ_T0016880.1 MGP_C57BL6NJ_G0014925.1 mouse_genomes_project X 68029139 68030681 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005745.1 MGP_C57BL6NJ_G0004838.1 mouse_genomes_project X 57455785 57707654 + antisense antisense MGP_C57BL6NJ_T0098546.1 MGP_C57BL6NJ_G0036730.1 mouse_genomes_project X 166317095 166356453 - MGP_C57BL6NJ_P0098546 Grpr protein_coding protein_coding MGP_C57BL6NJ_T0017393.1 MGP_C57BL6NJ_G0015438.1 mouse_genomes_project X 169889781 169890228 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017267.1 MGP_C57BL6NJ_G0015312.1 mouse_genomes_project X 143490502 143492649 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017052.1 MGP_C57BL6NJ_G0015097.1 mouse_genomes_project X 100448165 100448448 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009614.1 MGP_C57BL6NJ_G0007709.1 mouse_genomes_project X 129833829 129836679 + 4930558G05Rik lincRNA lincRNA MGP_C57BL6NJ_T0012037.1 MGP_C57BL6NJ_G0010122.1 mouse_genomes_project X 128040137 128040412 + Gm22636 misc_RNA misc_RNA MGP_C57BL6NJ_T0017362.1 MGP_C57BL6NJ_G0015407.1 mouse_genomes_project X 162636840 162637274 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098325.1 MGP_C57BL6NJ_G0036673.1 mouse_genomes_project X 154025972 154037483 - MGP_C57BL6NJ_P0098325 Ribc1 protein_coding protein_coding MGP_C57BL6NJ_T0098326.1 MGP_C57BL6NJ_G0036673.1 mouse_genomes_project X 154030771 154037458 - Ribc1 protein_coding processed_transcript MGP_C57BL6NJ_T0011429.1 MGP_C57BL6NJ_G0009514.1 mouse_genomes_project X 64227475 64227552 - Mir871 miRNA miRNA MGP_C57BL6NJ_T0097396.1 MGP_C57BL6NJ_G0036416.1 mouse_genomes_project X 94686008 94709971 - MGP_C57BL6NJ_P0097396 Amer1 protein_coding protein_coding MGP_C57BL6NJ_T0098002.1 MGP_C57BL6NJ_G0036596.1 mouse_genomes_project X 138014017 138017514 + MGP_C57BL6NJ_P0098002 Tceal1 protein_coding protein_coding MGP_C57BL6NJ_T0017056.1 MGP_C57BL6NJ_G0015101.1 mouse_genomes_project X 101139618 101139924 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097854.1 MGP_C57BL6NJ_G0036551.1 mouse_genomes_project X 134866540 134881261 + MGP_C57BL6NJ_P0097854 Tnmd protein_coding protein_coding MGP_C57BL6NJ_T0102055.1 MGP_C57BL6NJ_G0040101.1 mouse_genomes_project X 1895534 1895610 + Gm26401 snoRNA snoRNA MGP_C57BL6NJ_T0011401.1 MGP_C57BL6NJ_G0009486.1 mouse_genomes_project X 49100795 49100879 - Mir19b-2 miRNA miRNA MGP_C57BL6NJ_T0102363.1 MGP_C57BL6NJ_G0040307.1 mouse_genomes_project X 154469733 154471933 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102364.1 MGP_C57BL6NJ_G0040307.1 mouse_genomes_project X 154470018 154471160 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0097650.1 MGP_C57BL6NJ_G0036483.1 mouse_genomes_project X 103258974 103260059 + MGP_C57BL6NJ_P0097650 Zcchc13 protein_coding protein_coding MGP_C57BL6NJ_T0016694.1 MGP_C57BL6NJ_G0014739.1 mouse_genomes_project X 10043704 10044581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016726.1 MGP_C57BL6NJ_G0014771.1 mouse_genomes_project X 17636663 17638632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017256.1 MGP_C57BL6NJ_G0015301.1 mouse_genomes_project X 142038139 142038968 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011403.1 MGP_C57BL6NJ_G0009488.1 mouse_genomes_project X 49101143 49101226 - Mir18b miRNA miRNA MGP_C57BL6NJ_T0016921.1 MGP_C57BL6NJ_G0014966.1 mouse_genomes_project X 74171205 74171643 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096263.1 MGP_C57BL6NJ_G0036092.1 mouse_genomes_project X 14700803 14702634 - MGP_C57BL6NJ_P0096263 BC049702 protein_coding protein_coding MGP_C57BL6NJ_T0098482.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163149169 163178679 + MGP_C57BL6NJ_P0098482 Phka2 protein_coding protein_coding MGP_C57BL6NJ_T0098483.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163149431 163180715 + Phka2 protein_coding retained_intron MGP_C57BL6NJ_T0098484.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163149431 163246897 + MGP_C57BL6NJ_P0098484 Phka2 protein_coding protein_coding MGP_C57BL6NJ_T0098485.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163149462 163205970 + MGP_C57BL6NJ_P0098485 Phka2 protein_coding protein_coding MGP_C57BL6NJ_T0098486.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163149809 163238613 + MGP_C57BL6NJ_P0098486 Phka2 protein_coding protein_coding MGP_C57BL6NJ_T0098487.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163174250 163188512 + Phka2 protein_coding processed_transcript MGP_C57BL6NJ_T0098488.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163174260 163188507 + Phka2 protein_coding processed_transcript MGP_C57BL6NJ_T0098489.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163181796 163238645 + Phka2 protein_coding processed_transcript MGP_C57BL6NJ_T0098490.1 MGP_C57BL6NJ_G0036716.1 mouse_genomes_project X 163204801 163209764 + Phka2 protein_coding processed_transcript MGP_C57BL6NJ_T0017363.1 MGP_C57BL6NJ_G0015408.1 mouse_genomes_project X 162651846 162652344 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017117.1 MGP_C57BL6NJ_G0015162.1 mouse_genomes_project X 107207446 107210487 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097660.1 MGP_C57BL6NJ_G0036487.1 mouse_genomes_project X 103933459 104080570 - MGP_C57BL6NJ_P0097660 Abcb7 protein_coding protein_coding MGP_C57BL6NJ_T0097661.1 MGP_C57BL6NJ_G0036487.1 mouse_genomes_project X 104000306 104080580 - Abcb7 protein_coding retained_intron MGP_C57BL6NJ_T0017136.1 MGP_C57BL6NJ_G0015181.1 mouse_genomes_project X 112745398 112750302 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097215.1 MGP_C57BL6NJ_G0036355.1 mouse_genomes_project X 73298528 73505708 - MGP_C57BL6NJ_P0097215 F8 protein_coding protein_coding MGP_C57BL6NJ_T0097216.1 MGP_C57BL6NJ_G0036355.1 mouse_genomes_project X 73298532 73503433 - MGP_C57BL6NJ_P0097216 F8 protein_coding protein_coding MGP_C57BL6NJ_T0097217.1 MGP_C57BL6NJ_G0036355.1 mouse_genomes_project X 73466013 73506009 - MGP_C57BL6NJ_P0097217 F8 protein_coding protein_coding MGP_C57BL6NJ_T0009589.1 MGP_C57BL6NJ_G0007697.1 mouse_genomes_project X 98757438 98798726 - Gm14812 lincRNA lincRNA MGP_C57BL6NJ_T0097651.1 MGP_C57BL6NJ_G0036484.1 mouse_genomes_project X 103327735 103456697 - MGP_C57BL6NJ_P0097651 Slc16a2 protein_coding protein_coding MGP_C57BL6NJ_T0097652.1 MGP_C57BL6NJ_G0036484.1 mouse_genomes_project X 103330172 103336776 - Slc16a2 protein_coding retained_intron MGP_C57BL6NJ_T0097653.1 MGP_C57BL6NJ_G0036484.1 mouse_genomes_project X 103336705 103364493 - Slc16a2 protein_coding processed_transcript MGP_C57BL6NJ_T0017372.1 MGP_C57BL6NJ_G0015417.1 mouse_genomes_project X 165328184 165328638 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012019.1 MGP_C57BL6NJ_G0010104.1 mouse_genomes_project X 32648919 32649190 - Gm24809 misc_RNA misc_RNA MGP_C57BL6NJ_T0096146.1 MGP_C57BL6NJ_G0036047.1 mouse_genomes_project X 3690221 3691028 - MGP_C57BL6NJ_P0096146 protein_coding protein_coding MGP_C57BL6NJ_T0096837.1 MGP_C57BL6NJ_G0036288.1 mouse_genomes_project X 69692387 69696415 + MGP_C57BL6NJ_P0096837 Prrg3 protein_coding protein_coding MGP_C57BL6NJ_T0096838.1 MGP_C57BL6NJ_G0036288.1 mouse_genomes_project X 69692388 69699874 + MGP_C57BL6NJ_P0096838 Prrg3 protein_coding protein_coding MGP_C57BL6NJ_T0096839.1 MGP_C57BL6NJ_G0036288.1 mouse_genomes_project X 69692745 69702486 + MGP_C57BL6NJ_P0096839 Prrg3 protein_coding protein_coding MGP_C57BL6NJ_T0002619.1 MGP_C57BL6NJ_G0002506.1 mouse_genomes_project X 38024766 38028572 - TEC TEC MGP_C57BL6NJ_T0097768.1 MGP_C57BL6NJ_G0036519.1 mouse_genomes_project X 109078896 109080719 + MGP_C57BL6NJ_P0097768 Gm6377 protein_coding protein_coding MGP_C57BL6NJ_T0097769.1 MGP_C57BL6NJ_G0036519.1 mouse_genomes_project X 109078898 109082580 + MGP_C57BL6NJ_P0097769 Gm6377 protein_coding protein_coding MGP_C57BL6NJ_T0097421.1 MGP_C57BL6NJ_G0036424.1 mouse_genomes_project X 95760919 95878780 + MGP_C57BL6NJ_P0097421 Heph protein_coding protein_coding MGP_C57BL6NJ_T0097422.1 MGP_C57BL6NJ_G0036424.1 mouse_genomes_project X 95761933 95847846 + MGP_C57BL6NJ_P0097422 Heph protein_coding protein_coding MGP_C57BL6NJ_T0097423.1 MGP_C57BL6NJ_G0036424.1 mouse_genomes_project X 95761950 95878777 + MGP_C57BL6NJ_P0097423 Heph protein_coding protein_coding MGP_C57BL6NJ_T0097424.1 MGP_C57BL6NJ_G0036424.1 mouse_genomes_project X 95761988 95785176 + Heph protein_coding retained_intron MGP_C57BL6NJ_T0097425.1 MGP_C57BL6NJ_G0036424.1 mouse_genomes_project X 95761988 95797087 + Heph protein_coding retained_intron MGP_C57BL6NJ_T0019143.1 MGP_C57BL6NJ_G0016185.1 mouse_genomes_project X 136454227 136474957 + processed_transcript processed_transcript MGP_C57BL6NJ_T0016894.1 MGP_C57BL6NJ_G0014939.1 mouse_genomes_project X 69192392 69192697 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011378.1 MGP_C57BL6NJ_G0009463.1 mouse_genomes_project X 1913166 1913234 - Mir188 miRNA miRNA MGP_C57BL6NJ_T0097765.1 MGP_C57BL6NJ_G0036518.1 mouse_genomes_project X 108979176 109049890 + MGP_C57BL6NJ_P0097765 Sh3bgrl protein_coding protein_coding MGP_C57BL6NJ_T0097766.1 MGP_C57BL6NJ_G0036518.1 mouse_genomes_project X 108979320 109080014 + Sh3bgrl protein_coding processed_transcript MGP_C57BL6NJ_T0097767.1 MGP_C57BL6NJ_G0036518.1 mouse_genomes_project X 109000953 109041757 + Sh3bgrl protein_coding processed_transcript MGP_C57BL6NJ_T0096738.1 MGP_C57BL6NJ_G0036254.1 mouse_genomes_project X 56896050 56994775 - MGP_C57BL6NJ_P0096738 Mcf2 protein_coding protein_coding MGP_C57BL6NJ_T0096739.1 MGP_C57BL6NJ_G0036254.1 mouse_genomes_project X 56896050 57030177 - MGP_C57BL6NJ_P0096739 Mcf2 protein_coding protein_coding MGP_C57BL6NJ_T0096740.1 MGP_C57BL6NJ_G0036254.1 mouse_genomes_project X 56896053 56994718 - MGP_C57BL6NJ_P0096740 Mcf2 protein_coding protein_coding MGP_C57BL6NJ_T0017150.1 MGP_C57BL6NJ_G0015195.1 mouse_genomes_project X 114989532 114989991 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096126.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941395 2954073 - MGP_C57BL6NJ_P0096126 Porcn protein_coding protein_coding MGP_C57BL6NJ_T0096127.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941396 2954039 - MGP_C57BL6NJ_P0096127 Porcn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096128.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941397 2954049 - MGP_C57BL6NJ_P0096128 Porcn protein_coding protein_coding MGP_C57BL6NJ_T0096129.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941397 2954049 - MGP_C57BL6NJ_P0096129 Porcn protein_coding protein_coding MGP_C57BL6NJ_T0096130.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941397 2954049 - MGP_C57BL6NJ_P0096130 Porcn protein_coding protein_coding MGP_C57BL6NJ_T0096131.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2941400 2954045 - MGP_C57BL6NJ_P0096131 Porcn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096132.1 MGP_C57BL6NJ_G0036042.1 mouse_genomes_project X 2950986 2954061 - Porcn protein_coding retained_intron MGP_C57BL6NJ_T0097025.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 71963530 72034305 - MGP_C57BL6NJ_P0097025 Mecp2 protein_coding protein_coding MGP_C57BL6NJ_T0097026.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 71963766 72028668 - MGP_C57BL6NJ_P0097026 Mecp2 protein_coding protein_coding MGP_C57BL6NJ_T0097027.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 71973058 72034326 - MGP_C57BL6NJ_P0097027 Mecp2 protein_coding protein_coding MGP_C57BL6NJ_T0097028.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 71973059 72034248 - MGP_C57BL6NJ_P0097028 Mecp2 protein_coding protein_coding MGP_C57BL6NJ_T0097029.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 71973440 72034246 - MGP_C57BL6NJ_P0097029 Mecp2 protein_coding protein_coding MGP_C57BL6NJ_T0097030.1 MGP_C57BL6NJ_G0036326.1 mouse_genomes_project X 72029670 72034233 - Mecp2 protein_coding retained_intron MGP_C57BL6NJ_T0016970.1 MGP_C57BL6NJ_G0015015.1 mouse_genomes_project X 86512459 86513473 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102058.1 MGP_C57BL6NJ_G0040104.1 mouse_genomes_project X 32323676 32323763 + Gm23613 snoRNA snoRNA MGP_C57BL6NJ_T0017075.1 MGP_C57BL6NJ_G0015120.1 mouse_genomes_project X 102873887 102875691 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017222.1 MGP_C57BL6NJ_G0015267.1 mouse_genomes_project X 136747255 136747997 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012021.1 MGP_C57BL6NJ_G0010106.1 mouse_genomes_project X 49712568 49712875 + Gm23718 misc_RNA misc_RNA MGP_C57BL6NJ_T0098627.1 MGP_C57BL6NJ_G0036754.1 mouse_genomes_project X 169427877 169438590 - MGP_C57BL6NJ_P0098627 Tceanc protein_coding protein_coding MGP_C57BL6NJ_T0098628.1 MGP_C57BL6NJ_G0036754.1 mouse_genomes_project X 169430383 169431463 - MGP_C57BL6NJ_P0098628 Tceanc protein_coding protein_coding MGP_C57BL6NJ_T0098629.1 MGP_C57BL6NJ_G0036754.1 mouse_genomes_project X 169431357 169446723 - MGP_C57BL6NJ_P0098629 Tceanc protein_coding protein_coding MGP_C57BL6NJ_T0009557.1 MGP_C57BL6NJ_G0007672.1 mouse_genomes_project X 9890534 9921046 + Gm14505 lincRNA lincRNA MGP_C57BL6NJ_T0017132.1 MGP_C57BL6NJ_G0015177.1 mouse_genomes_project X 112413392 112417263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096381.1 MGP_C57BL6NJ_G0036127.1 mouse_genomes_project X 32144843 32153222 + MGP_C57BL6NJ_P0096381 Pgrmc1 protein_coding protein_coding MGP_C57BL6NJ_T0097311.1 MGP_C57BL6NJ_G0036387.1 mouse_genomes_project X 84457133 84481355 + MGP_C57BL6NJ_P0097311 5430427O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0096790.1 MGP_C57BL6NJ_G0036277.1 mouse_genomes_project X 67995721 67999262 + MGP_C57BL6NJ_P0096790 1110012L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0005744.1 MGP_C57BL6NJ_G0004837.1 mouse_genomes_project X 53917097 53920911 + Gm14718 antisense antisense MGP_C57BL6NJ_T0096762.1 MGP_C57BL6NJ_G0036268.1 mouse_genomes_project X 63389793 63390135 + MGP_C57BL6NJ_P0096762 protein_coding protein_coding MGP_C57BL6NJ_T0100769.1 MGP_C57BL6NJ_G0038815.1 mouse_genomes_project X 17820264 17820367 + Gm25812 snRNA snRNA MGP_C57BL6NJ_T0098204.1 MGP_C57BL6NJ_G0036657.1 mouse_genomes_project X 149161087 149162193 - MGP_C57BL6NJ_P0098204 Vmn1r41 protein_coding protein_coding MGP_C57BL6NJ_T0017263.1 MGP_C57BL6NJ_G0015308.1 mouse_genomes_project X 143149700 143150210 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009617.1 MGP_C57BL6NJ_G0007712.1 mouse_genomes_project X 142376825 142395370 + Eif2c5 lincRNA lincRNA MGP_C57BL6NJ_T0017024.1 MGP_C57BL6NJ_G0015069.1 mouse_genomes_project X 94019186 94019816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017206.1 MGP_C57BL6NJ_G0015251.1 mouse_genomes_project X 132413901 132415967 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102111.1 MGP_C57BL6NJ_G0040157.1 mouse_genomes_project X 170343922 170344040 - Gm26368 snoRNA snoRNA MGP_C57BL6NJ_T0103577.1 MGP_C57BL6NJ_G0041369.1 mouse_genomes_project X 54392158 54392302 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097711.1 MGP_C57BL6NJ_G0036500.1 mouse_genomes_project X 105914157 105933142 + MGP_C57BL6NJ_P0097711 protein_coding protein_coding MGP_C57BL6NJ_T0097712.1 MGP_C57BL6NJ_G0036500.1 mouse_genomes_project X 105918685 105921833 + protein_coding retained_intron MGP_C57BL6NJ_T0017368.1 MGP_C57BL6NJ_G0015413.1 mouse_genomes_project X 163367205 163367335 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096746.1 MGP_C57BL6NJ_G0036256.1 mouse_genomes_project X 57293212 57323540 - MGP_C57BL6NJ_P0096746 Gm7073 protein_coding protein_coding MGP_C57BL6NJ_T0103595.1 MGP_C57BL6NJ_G0041387.1 mouse_genomes_project X 85049801 85050833 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096927.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71692865 71696662 + MGP_C57BL6NJ_P0096927 Ssr4 protein_coding protein_coding MGP_C57BL6NJ_T0096928.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71692899 71696664 + MGP_C57BL6NJ_P0096928 Ssr4 protein_coding protein_coding MGP_C57BL6NJ_T0096929.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71693019 71694930 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0096930.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71693021 71696170 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0096931.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71693021 71696664 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0096932.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71693061 71696649 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0096933.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71693102 71696001 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0096934.1 MGP_C57BL6NJ_G0036317.1 mouse_genomes_project X 71694681 71696668 + Ssr4 protein_coding retained_intron MGP_C57BL6NJ_T0098645.1 MGP_C57BL6NJ_G0036759.1 mouse_genomes_project X 170326068 170364596 - MGP_C57BL6NJ_P0098645 Prps2 protein_coding protein_coding MGP_C57BL6NJ_T0098646.1 MGP_C57BL6NJ_G0036759.1 mouse_genomes_project X 170354265 170364557 - Prps2 protein_coding processed_transcript MGP_C57BL6NJ_T0096677.1 MGP_C57BL6NJ_G0036238.1 mouse_genomes_project X 53291784 53318073 + MGP_C57BL6NJ_P0096677 Slc9a6 protein_coding protein_coding MGP_C57BL6NJ_T0096678.1 MGP_C57BL6NJ_G0036238.1 mouse_genomes_project X 53291802 53349114 + MGP_C57BL6NJ_P0096678 Slc9a6 protein_coding protein_coding MGP_C57BL6NJ_T0096679.1 MGP_C57BL6NJ_G0036238.1 mouse_genomes_project X 53291844 53348725 + MGP_C57BL6NJ_P0096679 Slc9a6 protein_coding protein_coding MGP_C57BL6NJ_T0096680.1 MGP_C57BL6NJ_G0036238.1 mouse_genomes_project X 53343128 53348713 + Slc9a6 protein_coding retained_intron MGP_C57BL6NJ_T0005741.1 MGP_C57BL6NJ_G0004835.1 mouse_genomes_project X 48913306 48957123 + A630012P03Rik antisense antisense MGP_C57BL6NJ_T0005742.1 MGP_C57BL6NJ_G0004835.1 mouse_genomes_project X 48913306 48957123 + A630012P03Rik antisense antisense MGP_C57BL6NJ_T0016989.1 MGP_C57BL6NJ_G0015034.1 mouse_genomes_project X 88897596 88898352 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016823.1 MGP_C57BL6NJ_G0014868.1 mouse_genomes_project X 55386167 55387056 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017077.1 MGP_C57BL6NJ_G0015122.1 mouse_genomes_project X 102923829 102924284 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016691.1 MGP_C57BL6NJ_G0014736.1 mouse_genomes_project X 8561490 8562026 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096761.1 MGP_C57BL6NJ_G0036267.1 mouse_genomes_project X 63389733 63390252 + MGP_C57BL6NJ_P0096761 protein_coding protein_coding MGP_C57BL6NJ_T0100771.1 MGP_C57BL6NJ_G0038817.1 mouse_genomes_project X 31895056 31895160 + Gm25047 snRNA snRNA MGP_C57BL6NJ_T0098149.1 MGP_C57BL6NJ_G0036644.1 mouse_genomes_project X 144636730 144641434 + MGP_C57BL6NJ_P0098149 Rgag1 protein_coding protein_coding MGP_C57BL6NJ_T0005725.1 MGP_C57BL6NJ_G0004825.1 mouse_genomes_project X 2260649 2269509 + Ppp1r3fos antisense antisense MGP_C57BL6NJ_T0005726.1 MGP_C57BL6NJ_G0004825.1 mouse_genomes_project X 2261541 2266909 + Ppp1r3fos antisense antisense MGP_C57BL6NJ_T0016820.1 MGP_C57BL6NJ_G0014865.1 mouse_genomes_project X 54979893 54980573 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002623.1 MGP_C57BL6NJ_G0002510.1 mouse_genomes_project X 129093992 129095856 + TEC TEC MGP_C57BL6NJ_T0097531.1 MGP_C57BL6NJ_G0036452.1 mouse_genomes_project X 100667964 100676036 - MGP_C57BL6NJ_P0097531 Gm20489 protein_coding protein_coding MGP_C57BL6NJ_T0017219.1 MGP_C57BL6NJ_G0015264.1 mouse_genomes_project X 135913298 135914204 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017199.1 MGP_C57BL6NJ_G0015244.1 mouse_genomes_project X 130412468 130412791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096054.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552085 2552730 + Otud5 protein_coding processed_transcript MGP_C57BL6NJ_T0096055.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552552 2587681 + MGP_C57BL6NJ_P0096055 Otud5 protein_coding protein_coding MGP_C57BL6NJ_T0096056.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552577 2585915 + MGP_C57BL6NJ_P0096056 Otud5 protein_coding protein_coding MGP_C57BL6NJ_T0096057.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552777 2586340 + MGP_C57BL6NJ_P0096057 Otud5 protein_coding protein_coding MGP_C57BL6NJ_T0096058.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552803 2586345 + MGP_C57BL6NJ_P0096058 Otud5 protein_coding protein_coding MGP_C57BL6NJ_T0096059.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2552837 2587675 + MGP_C57BL6NJ_P0096059 Otud5 protein_coding protein_coding MGP_C57BL6NJ_T0096060.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2553326 2586339 + Otud5 protein_coding retained_intron MGP_C57BL6NJ_T0096061.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2553327 2579020 + Otud5 protein_coding retained_intron MGP_C57BL6NJ_T0096062.1 MGP_C57BL6NJ_G0036024.1 mouse_genomes_project X 2566784 2578620 + Otud5 protein_coding retained_intron MGP_C57BL6NJ_T0011419.1 MGP_C57BL6NJ_G0009504.1 mouse_genomes_project X 64193460 64193537 - Mir743b miRNA miRNA MGP_C57BL6NJ_T0017281.1 MGP_C57BL6NJ_G0015326.1 mouse_genomes_project X 145791766 145792076 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097956.1 MGP_C57BL6NJ_G0036578.1 mouse_genomes_project X 136853672 136860804 - MGP_C57BL6NJ_P0097956 protein_coding protein_coding MGP_C57BL6NJ_T0097957.1 MGP_C57BL6NJ_G0036578.1 mouse_genomes_project X 136853672 136855677 - MGP_C57BL6NJ_P0097957 protein_coding protein_coding MGP_C57BL6NJ_T0097772.1 MGP_C57BL6NJ_G0036522.1 mouse_genomes_project X 111148826 111149180 + MGP_C57BL6NJ_P0097772 Gm10112 protein_coding protein_coding MGP_C57BL6NJ_T0005765.1 MGP_C57BL6NJ_G0004855.1 mouse_genomes_project X 103043967 103096471 + Tsix antisense antisense MGP_C57BL6NJ_T0096294.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15987162 15999927 + MGP_C57BL6NJ_P0096294 Cdk16 protein_coding protein_coding MGP_C57BL6NJ_T0096295.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15987207 15994409 + Cdk16 protein_coding processed_transcript MGP_C57BL6NJ_T0096296.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15987626 15999927 + MGP_C57BL6NJ_P0096296 Cdk16 protein_coding protein_coding MGP_C57BL6NJ_T0096297.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15994329 15996332 + Cdk16 protein_coding retained_intron MGP_C57BL6NJ_T0096298.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15995907 15996532 + Cdk16 protein_coding retained_intron MGP_C57BL6NJ_T0096299.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15996064 15997255 + Cdk16 protein_coding retained_intron MGP_C57BL6NJ_T0096300.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15996451 15997214 + Cdk16 protein_coding retained_intron MGP_C57BL6NJ_T0096301.1 MGP_C57BL6NJ_G0036101.1 mouse_genomes_project X 15996491 15999846 + Cdk16 protein_coding processed_transcript MGP_C57BL6NJ_T0096431.1 MGP_C57BL6NJ_G0036156.1 mouse_genomes_project X 33679688 33712185 - protein_coding transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0096432.1 MGP_C57BL6NJ_G0036156.1 mouse_genomes_project X 33679771 33710206 - protein_coding processed_transcript MGP_C57BL6NJ_T0016926.1 MGP_C57BL6NJ_G0014971.1 mouse_genomes_project X 75101697 75101952 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016911.1 MGP_C57BL6NJ_G0014956.1 mouse_genomes_project X 73402145 73404074 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009566.1 MGP_C57BL6NJ_G0007679.1 mouse_genomes_project X 34485648 34514861 - Gm14565 lincRNA lincRNA MGP_C57BL6NJ_T0016725.1 MGP_C57BL6NJ_G0014770.1 mouse_genomes_project X 17616151 17616505 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016732.1 MGP_C57BL6NJ_G0014777.1 mouse_genomes_project X 31315816 31317049 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012048.1 MGP_C57BL6NJ_G0010133.1 mouse_genomes_project X 165047029 165047303 - Gm23867 misc_RNA misc_RNA MGP_C57BL6NJ_T0098525.1 MGP_C57BL6NJ_G0036726.1 mouse_genomes_project X 165537971 165571289 - protein_coding retained_intron MGP_C57BL6NJ_T0098526.1 MGP_C57BL6NJ_G0036726.1 mouse_genomes_project X 165539159 165545956 - MGP_C57BL6NJ_P0098526 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098527.1 MGP_C57BL6NJ_G0036726.1 mouse_genomes_project X 165546985 165592683 - MGP_C57BL6NJ_P0098527 protein_coding protein_coding MGP_C57BL6NJ_T0098528.1 MGP_C57BL6NJ_G0036726.1 mouse_genomes_project X 165548670 165592569 - MGP_C57BL6NJ_P0098528 protein_coding protein_coding MGP_C57BL6NJ_T0098529.1 MGP_C57BL6NJ_G0036726.1 mouse_genomes_project X 165591288 165592683 - protein_coding processed_transcript MGP_C57BL6NJ_T0102060.1 MGP_C57BL6NJ_G0040106.1 mouse_genomes_project X 38574168 38574298 - Gm23705 snoRNA snoRNA MGP_C57BL6NJ_T0096419.1 MGP_C57BL6NJ_G0036145.1 mouse_genomes_project X 32877793 32880966 + MGP_C57BL6NJ_P0096419 protein_coding protein_coding MGP_C57BL6NJ_T0016767.1 MGP_C57BL6NJ_G0014812.1 mouse_genomes_project X 39776748 39777383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103599.1 MGP_C57BL6NJ_G0041391.1 mouse_genomes_project X 91147611 91148655 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103576.1 MGP_C57BL6NJ_G0041368.1 mouse_genomes_project X 52733698 52738961 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097078.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241121 72242125 + Taz protein_coding processed_transcript MGP_C57BL6NJ_T0097079.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241121 72242075 + Taz protein_coding processed_transcript MGP_C57BL6NJ_T0097080.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241959 72245097 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097081.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241959 72247245 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097082.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241959 72249358 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097083.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241963 72249361 + MGP_C57BL6NJ_P0097083 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097084.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241969 72247489 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097085.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241969 72247914 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097086.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241971 72249358 + MGP_C57BL6NJ_P0097086 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097087.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241975 72243179 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097088.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241981 72248368 + MGP_C57BL6NJ_P0097088 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097089.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72241998 72243524 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097090.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72242130 72248054 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097091.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72242217 72248610 + MGP_C57BL6NJ_P0097091 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097092.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72242291 72248695 + MGP_C57BL6NJ_P0097092 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097093.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72243146 72248558 + MGP_C57BL6NJ_P0097093 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097094.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72246874 72247819 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0097095.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72247229 72248944 + MGP_C57BL6NJ_P0097095 Taz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097096.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72247281 72249098 + MGP_C57BL6NJ_P0097096 Taz protein_coding protein_coding MGP_C57BL6NJ_T0097097.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72247871 72248941 + MGP_C57BL6NJ_P0097097 Taz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097098.1 MGP_C57BL6NJ_G0036334.1 mouse_genomes_project X 72247882 72248891 + Taz protein_coding retained_intron MGP_C57BL6NJ_T0096241.1 MGP_C57BL6NJ_G0036081.1 mouse_genomes_project X 9300881 9301211 + MGP_C57BL6NJ_P0096241 Gm4906 protein_coding protein_coding MGP_C57BL6NJ_T0096149.1 MGP_C57BL6NJ_G0036050.1 mouse_genomes_project X 3833103 3833936 + MGP_C57BL6NJ_P0096149 protein_coding protein_coding MGP_C57BL6NJ_T0017105.1 MGP_C57BL6NJ_G0015150.1 mouse_genomes_project X 106039085 106042270 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098548.1 MGP_C57BL6NJ_G0036732.1 mouse_genomes_project X 166730631 166757072 + MGP_C57BL6NJ_P0098548 Ap1s2 protein_coding protein_coding MGP_C57BL6NJ_T0098549.1 MGP_C57BL6NJ_G0036732.1 mouse_genomes_project X 166730756 166756765 + MGP_C57BL6NJ_P0098549 Ap1s2 protein_coding protein_coding MGP_C57BL6NJ_T0098550.1 MGP_C57BL6NJ_G0036732.1 mouse_genomes_project X 166730759 166752952 + MGP_C57BL6NJ_P0098550 Ap1s2 protein_coding protein_coding MGP_C57BL6NJ_T0098551.1 MGP_C57BL6NJ_G0036732.1 mouse_genomes_project X 166733015 166756762 + MGP_C57BL6NJ_P0098551 Ap1s2 protein_coding protein_coding MGP_C57BL6NJ_T0017113.1 MGP_C57BL6NJ_G0015158.1 mouse_genomes_project X 107021933 107022818 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097313.1 MGP_C57BL6NJ_G0036389.1 mouse_genomes_project X 84797727 84803293 + MGP_C57BL6NJ_P0097313 Nr0b1 protein_coding protein_coding MGP_C57BL6NJ_T0016869.1 MGP_C57BL6NJ_G0014914.1 mouse_genomes_project X 64625994 64626612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017374.1 MGP_C57BL6NJ_G0015419.1 mouse_genomes_project X 165442928 165443570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096759.1 MGP_C57BL6NJ_G0036265.1 mouse_genomes_project X 62389280 62390651 + MGP_C57BL6NJ_P0096759 Ctag2 protein_coding protein_coding MGP_C57BL6NJ_T0016655.1 MGP_C57BL6NJ_G0014700.1 mouse_genomes_project X 2757065 2757933 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017166.1 MGP_C57BL6NJ_G0015211.1 mouse_genomes_project X 118109292 118110980 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011434.1 MGP_C57BL6NJ_G0009519.1 mouse_genomes_project X 64256048 64256122 - Mir465 miRNA miRNA MGP_C57BL6NJ_T0012052.1 MGP_C57BL6NJ_G0010137.1 mouse_genomes_project X 172355934 172356103 + Gm27980 misc_RNA misc_RNA MGP_C57BL6NJ_T0102070.1 MGP_C57BL6NJ_G0040116.1 mouse_genomes_project X 72230087 72230224 + Snora70 snoRNA snoRNA MGP_C57BL6NJ_T0097637.1 MGP_C57BL6NJ_G0036475.1 mouse_genomes_project X 102363699 102370677 - MGP_C57BL6NJ_P0097637 protein_coding protein_coding MGP_C57BL6NJ_T0097640.1 MGP_C57BL6NJ_G0036475.1 mouse_genomes_project X 102367723 102369417 - MGP_C57BL6NJ_P0097640 protein_coding protein_coding MGP_C57BL6NJ_T0016976.1 MGP_C57BL6NJ_G0015021.1 mouse_genomes_project X 87523791 87526236 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102066.1 MGP_C57BL6NJ_G0040112.1 mouse_genomes_project X 66215757 66215885 - Gm22435 snoRNA snoRNA MGP_C57BL6NJ_T0017165.1 MGP_C57BL6NJ_G0015210.1 mouse_genomes_project X 118108198 118108402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011456.1 MGP_C57BL6NJ_G0009541.1 mouse_genomes_project X 101775890 101775986 - Gm26318 miRNA miRNA MGP_C57BL6NJ_T0009590.1 MGP_C57BL6NJ_G0007698.1 mouse_genomes_project X 98761678 98772361 - Gm14809 lincRNA lincRNA MGP_C57BL6NJ_T0017013.1 MGP_C57BL6NJ_G0015058.1 mouse_genomes_project X 93487697 93488555 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016794.1 MGP_C57BL6NJ_G0014839.1 mouse_genomes_project X 47911170 47911368 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096256.1 MGP_C57BL6NJ_G0036090.1 mouse_genomes_project X 13358432 13486033 + MGP_C57BL6NJ_P0096256 Kdm6a protein_coding protein_coding MGP_C57BL6NJ_T0096257.1 MGP_C57BL6NJ_G0036090.1 mouse_genomes_project X 13358432 13486033 + MGP_C57BL6NJ_P0096257 Kdm6a protein_coding protein_coding MGP_C57BL6NJ_T0096258.1 MGP_C57BL6NJ_G0036090.1 mouse_genomes_project X 13358505 13457859 + Kdm6a protein_coding retained_intron MGP_C57BL6NJ_T0096259.1 MGP_C57BL6NJ_G0036090.1 mouse_genomes_project X 13358863 13484876 + MGP_C57BL6NJ_P0096259 Kdm6a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096260.1 MGP_C57BL6NJ_G0036090.1 mouse_genomes_project X 13480726 13484481 + Kdm6a protein_coding retained_intron MGP_C57BL6NJ_T0102357.1 MGP_C57BL6NJ_G0040302.1 mouse_genomes_project X 129093998 129094640 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0100763.1 MGP_C57BL6NJ_G0038809.1 mouse_genomes_project X 11021514 11021621 - Gm23516 snRNA snRNA MGP_C57BL6NJ_T0017202.1 MGP_C57BL6NJ_G0015247.1 mouse_genomes_project X 131375199 131376697 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098405.1 MGP_C57BL6NJ_G0036700.1 mouse_genomes_project X 157989641 158759103 + MGP_C57BL6NJ_P0098405 Gm15155 protein_coding protein_coding MGP_C57BL6NJ_T0097841.1 MGP_C57BL6NJ_G0036548.1 mouse_genomes_project X 129093992 129095856 + MGP_C57BL6NJ_P0097841 Rbm31y protein_coding protein_coding MGP_C57BL6NJ_T0096706.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53947548 53956951 - Arhgef6 protein_coding retained_intron MGP_C57BL6NJ_T0096707.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53947548 54058527 - MGP_C57BL6NJ_P0096707 Arhgef6 protein_coding protein_coding MGP_C57BL6NJ_T0096708.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53949503 54000929 - MGP_C57BL6NJ_P0096708 Arhgef6 protein_coding protein_coding MGP_C57BL6NJ_T0096709.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53955291 53968334 - MGP_C57BL6NJ_P0096709 Arhgef6 protein_coding protein_coding MGP_C57BL6NJ_T0096710.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53965976 54046399 - MGP_C57BL6NJ_P0096710 Arhgef6 protein_coding protein_coding MGP_C57BL6NJ_T0096711.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 53989718 54046401 - Arhgef6 protein_coding retained_intron MGP_C57BL6NJ_T0096712.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 54017980 54020659 - Arhgef6 protein_coding processed_transcript MGP_C57BL6NJ_T0096713.1 MGP_C57BL6NJ_G0036246.1 mouse_genomes_project X 54055701 54058304 - Arhgef6 protein_coding retained_intron MGP_C57BL6NJ_T0017268.1 MGP_C57BL6NJ_G0015313.1 mouse_genomes_project X 143533540 143533798 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017018.1 MGP_C57BL6NJ_G0015063.1 mouse_genomes_project X 93758609 93759018 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096554.1 MGP_C57BL6NJ_G0036188.1 mouse_genomes_project X 44423492 44448315 + MGP_C57BL6NJ_P0096554 Utp14a protein_coding protein_coding MGP_C57BL6NJ_T0096555.1 MGP_C57BL6NJ_G0036188.1 mouse_genomes_project X 44423527 44434208 + Utp14a protein_coding processed_transcript MGP_C57BL6NJ_T0096556.1 MGP_C57BL6NJ_G0036188.1 mouse_genomes_project X 44423548 44439256 + Utp14a protein_coding processed_transcript MGP_C57BL6NJ_T0098040.1 MGP_C57BL6NJ_G0036607.1 mouse_genomes_project X 138493746 138499557 - MGP_C57BL6NJ_P0098040 Esx1 protein_coding protein_coding MGP_C57BL6NJ_T0098041.1 MGP_C57BL6NJ_G0036607.1 mouse_genomes_project X 138493746 138499712 - MGP_C57BL6NJ_P0098041 Esx1 protein_coding protein_coding MGP_C57BL6NJ_T0098042.1 MGP_C57BL6NJ_G0036607.1 mouse_genomes_project X 138497887 138502233 - MGP_C57BL6NJ_P0098042 Esx1 protein_coding protein_coding MGP_C57BL6NJ_T0096905.1 MGP_C57BL6NJ_G0036312.1 mouse_genomes_project X 71588792 71621070 - MGP_C57BL6NJ_P0096905 Bcap31 protein_coding protein_coding MGP_C57BL6NJ_T0016842.1 MGP_C57BL6NJ_G0014887.1 mouse_genomes_project X 58751982 58753124 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098387.1 MGP_C57BL6NJ_G0036695.1 mouse_genomes_project X 157460053 157463432 - MGP_C57BL6NJ_P0098387 protein_coding protein_coding MGP_C57BL6NJ_T0017066.1 MGP_C57BL6NJ_G0015111.1 mouse_genomes_project X 102518510 102519268 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009562.1 MGP_C57BL6NJ_G0007675.1 mouse_genomes_project X 16675546 16712665 - lincRNA lincRNA MGP_C57BL6NJ_T0017012.1 MGP_C57BL6NJ_G0015057.1 mouse_genomes_project X 93487607 93488550 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098590.1 MGP_C57BL6NJ_G0036744.1 mouse_genomes_project X 167378842 167409376 + MGP_C57BL6NJ_P0098590 Asb9 protein_coding protein_coding MGP_C57BL6NJ_T0017347.1 MGP_C57BL6NJ_G0015392.1 mouse_genomes_project X 160097846 160098279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005779.1 MGP_C57BL6NJ_G0004864.1 mouse_genomes_project X 170341201 170344164 + Gm15239 antisense antisense MGP_C57BL6NJ_T0096656.1 MGP_C57BL6NJ_G0036224.1 mouse_genomes_project X 49936662 50052097 - MGP_C57BL6NJ_P0096656 protein_coding protein_coding MGP_C57BL6NJ_T0017283.1 MGP_C57BL6NJ_G0015328.1 mouse_genomes_project X 145841914 145850485 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019139.1 MGP_C57BL6NJ_G0016183.1 mouse_genomes_project X 136117827 136131238 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019140.1 MGP_C57BL6NJ_G0016183.1 mouse_genomes_project X 136118626 136141333 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019141.1 MGP_C57BL6NJ_G0016183.1 mouse_genomes_project X 136122999 136131692 - processed_transcript processed_transcript MGP_C57BL6NJ_T0102081.1 MGP_C57BL6NJ_G0040127.1 mouse_genomes_project X 100539441 100539561 - Gm24061 snoRNA snoRNA MGP_C57BL6NJ_T0097436.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 97871420 98212953 - MGP_C57BL6NJ_P0097436 Ophn1 protein_coding protein_coding MGP_C57BL6NJ_T0097437.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 97875431 98212749 - MGP_C57BL6NJ_P0097437 Ophn1 protein_coding protein_coding MGP_C57BL6NJ_T0097438.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 97875437 97898122 - MGP_C57BL6NJ_P0097438 Ophn1 protein_coding protein_coding MGP_C57BL6NJ_T0097439.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 97880749 97898068 - Ophn1 protein_coding processed_transcript MGP_C57BL6NJ_T0097440.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98026676 98212993 - Ophn1 protein_coding retained_intron MGP_C57BL6NJ_T0097441.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98026904 98212953 - Ophn1 protein_coding retained_intron MGP_C57BL6NJ_T0097442.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98049857 98212953 - MGP_C57BL6NJ_P0097442 Ophn1 protein_coding protein_coding MGP_C57BL6NJ_T0097443.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98120907 98212577 - Ophn1 protein_coding retained_intron MGP_C57BL6NJ_T0097444.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98194547 98212352 - Ophn1 protein_coding processed_transcript MGP_C57BL6NJ_T0097445.1 MGP_C57BL6NJ_G0036429.1 mouse_genomes_project X 98209751 98212593 - Ophn1 protein_coding retained_intron MGP_C57BL6NJ_T0016812.1 MGP_C57BL6NJ_G0014857.1 mouse_genomes_project X 52763374 52764253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100772.1 MGP_C57BL6NJ_G0038818.1 mouse_genomes_project X 31944404 31944502 - Gm22364 snRNA snRNA MGP_C57BL6NJ_T0017213.1 MGP_C57BL6NJ_G0015258.1 mouse_genomes_project X 134206827 134207862 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016803.1 MGP_C57BL6NJ_G0014848.1 mouse_genomes_project X 50229514 50229808 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016935.1 MGP_C57BL6NJ_G0014980.1 mouse_genomes_project X 76584712 76588647 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097482.1 MGP_C57BL6NJ_G0036440.1 mouse_genomes_project X 99941228 99947183 + MGP_C57BL6NJ_P0097482 Awat1 protein_coding protein_coding MGP_C57BL6NJ_T0096200.1 MGP_C57BL6NJ_G0036068.1 mouse_genomes_project X 7669076 7688802 - MGP_C57BL6NJ_P0096200 1810030O07Rik protein_coding protein_coding MGP_C57BL6NJ_T0016795.1 MGP_C57BL6NJ_G0014840.1 mouse_genomes_project X 48147503 48148036 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017327.1 MGP_C57BL6NJ_G0015372.1 mouse_genomes_project X 155994533 155994813 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098327.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154037615 154057619 + MGP_C57BL6NJ_P0098327 Smc1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098328.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154037615 154086402 + MGP_C57BL6NJ_P0098328 Smc1a protein_coding protein_coding MGP_C57BL6NJ_T0098329.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154057853 154059465 + Smc1a protein_coding retained_intron MGP_C57BL6NJ_T0098330.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154070345 154071653 + Smc1a protein_coding retained_intron MGP_C57BL6NJ_T0098331.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154082174 154083216 + Smc1a protein_coding retained_intron MGP_C57BL6NJ_T0098332.1 MGP_C57BL6NJ_G0036674.1 mouse_genomes_project X 154082782 154083488 + Smc1a protein_coding retained_intron MGP_C57BL6NJ_T0096675.1 MGP_C57BL6NJ_G0036236.1 mouse_genomes_project X 53223995 53229886 - MGP_C57BL6NJ_P0096675 Gm648 protein_coding protein_coding MGP_C57BL6NJ_T0096166.1 MGP_C57BL6NJ_G0036060.1 mouse_genomes_project X 4702055 4806464 + MGP_C57BL6NJ_P0096166 Sytl5 protein_coding protein_coding MGP_C57BL6NJ_T0096167.1 MGP_C57BL6NJ_G0036060.1 mouse_genomes_project X 4702055 4806464 + MGP_C57BL6NJ_P0096167 Sytl5 protein_coding protein_coding MGP_C57BL6NJ_T0096369.1 MGP_C57BL6NJ_G0036123.1 mouse_genomes_project X 31711097 31716374 + MGP_C57BL6NJ_P0096369 Zcchc12 protein_coding protein_coding MGP_C57BL6NJ_T0096370.1 MGP_C57BL6NJ_G0036123.1 mouse_genomes_project X 31711139 31716382 + MGP_C57BL6NJ_P0096370 Zcchc12 protein_coding protein_coding MGP_C57BL6NJ_T0096371.1 MGP_C57BL6NJ_G0036123.1 mouse_genomes_project X 31711152 31716381 + MGP_C57BL6NJ_P0096371 Zcchc12 protein_coding protein_coding MGP_C57BL6NJ_T0096372.1 MGP_C57BL6NJ_G0036123.1 mouse_genomes_project X 31711179 31716381 + MGP_C57BL6NJ_P0096372 Zcchc12 protein_coding protein_coding MGP_C57BL6NJ_T0097578.1 MGP_C57BL6NJ_G0036459.1 mouse_genomes_project X 100865735 100870189 + MGP_C57BL6NJ_P0097578 Itgb1bp2 protein_coding protein_coding MGP_C57BL6NJ_T0097579.1 MGP_C57BL6NJ_G0036459.1 mouse_genomes_project X 100868758 100869792 + Itgb1bp2 protein_coding retained_intron MGP_C57BL6NJ_T0009577.1 MGP_C57BL6NJ_G0007686.1 mouse_genomes_project X 66197963 66210012 - Fmr1os lincRNA lincRNA MGP_C57BL6NJ_T0103617.1 MGP_C57BL6NJ_G0041409.1 mouse_genomes_project X 156529387 156531657 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099202.1 MGP_C57BL6NJ_G0037266.1 mouse_genomes_project X 154005023 154005130 + n-R5s14 rRNA rRNA MGP_C57BL6NJ_T0016808.1 MGP_C57BL6NJ_G0014853.1 mouse_genomes_project X 52366244 52367124 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103572.1 MGP_C57BL6NJ_G0041364.1 mouse_genomes_project X 33765211 33766573 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096098.1 MGP_C57BL6NJ_G0036035.1 mouse_genomes_project X 2721978 2738075 - MGP_C57BL6NJ_P0096098 Glod5 protein_coding protein_coding MGP_C57BL6NJ_T0097878.1 MGP_C57BL6NJ_G0036557.1 mouse_genomes_project X 135170444 135186278 - MGP_C57BL6NJ_P0097878 Xkrx protein_coding protein_coding MGP_C57BL6NJ_T0097879.1 MGP_C57BL6NJ_G0036557.1 mouse_genomes_project X 135173972 135186426 - Xkrx protein_coding processed_transcript MGP_C57BL6NJ_T0098579.1 MGP_C57BL6NJ_G0036741.1 mouse_genomes_project X 167211290 167244460 + MGP_C57BL6NJ_P0098579 Vegfd protein_coding protein_coding MGP_C57BL6NJ_T0098580.1 MGP_C57BL6NJ_G0036741.1 mouse_genomes_project X 167232545 167242083 + Vegfd protein_coding retained_intron MGP_C57BL6NJ_T0016711.1 MGP_C57BL6NJ_G0014756.1 mouse_genomes_project X 15019537 15019870 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096515.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 38417889 39080605 - MGP_C57BL6NJ_P0096515 Tenm1 protein_coding protein_coding MGP_C57BL6NJ_T0096516.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 38417889 39080626 - MGP_C57BL6NJ_P0096516 Tenm1 protein_coding protein_coding MGP_C57BL6NJ_T0096517.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 38422414 39189195 - MGP_C57BL6NJ_P0096517 Tenm1 protein_coding protein_coding MGP_C57BL6NJ_T0096518.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 38712178 39354244 - Tenm1 protein_coding retained_intron MGP_C57BL6NJ_T0096519.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 38795520 39354367 - Tenm1 protein_coding retained_intron MGP_C57BL6NJ_T0096520.1 MGP_C57BL6NJ_G0036176.1 mouse_genomes_project X 39242991 39354244 - Tenm1 protein_coding processed_transcript MGP_C57BL6NJ_T0016696.1 MGP_C57BL6NJ_G0014741.1 mouse_genomes_project X 10638418 10638960 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017323.1 MGP_C57BL6NJ_G0015368.1 mouse_genomes_project X 155394403 155394677 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017265.1 MGP_C57BL6NJ_G0015310.1 mouse_genomes_project X 143297847 143298330 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017249.1 MGP_C57BL6NJ_G0015294.1 mouse_genomes_project X 140720477 140721187 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102106.1 MGP_C57BL6NJ_G0040152.1 mouse_genomes_project X 159898009 159898145 + Gm24281 snoRNA snoRNA MGP_C57BL6NJ_T0096095.1 MGP_C57BL6NJ_G0036034.1 mouse_genomes_project X 2675605 2684265 - MGP_C57BL6NJ_P0096095 Gata1 protein_coding protein_coding MGP_C57BL6NJ_T0096096.1 MGP_C57BL6NJ_G0036034.1 mouse_genomes_project X 2678794 2694354 - MGP_C57BL6NJ_P0096096 Gata1 protein_coding protein_coding MGP_C57BL6NJ_T0096097.1 MGP_C57BL6NJ_G0036034.1 mouse_genomes_project X 2679383 2680521 - MGP_C57BL6NJ_P0096097 Gata1 protein_coding protein_coding MGP_C57BL6NJ_T0096448.1 MGP_C57BL6NJ_G0036163.1 mouse_genomes_project X 33998647 34012460 + MGP_C57BL6NJ_P0096448 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096501.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38026095 38156626 + MGP_C57BL6NJ_P0096501 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0096502.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38027802 38156616 + MGP_C57BL6NJ_P0096502 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0096503.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38027931 38091893 + Stag2 protein_coding retained_intron MGP_C57BL6NJ_T0096504.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38028073 38085437 + MGP_C57BL6NJ_P0096504 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0096505.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38028544 38090632 + Stag2 protein_coding processed_transcript MGP_C57BL6NJ_T0096506.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38029058 38156626 + MGP_C57BL6NJ_P0096506 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0096507.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38029371 38085440 + MGP_C57BL6NJ_P0096507 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0096508.1 MGP_C57BL6NJ_G0036173.1 mouse_genomes_project X 38030537 38100242 + MGP_C57BL6NJ_P0096508 Stag2 protein_coding protein_coding MGP_C57BL6NJ_T0016713.1 MGP_C57BL6NJ_G0014758.1 mouse_genomes_project X 15166845 15167308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098073.1 MGP_C57BL6NJ_G0036619.1 mouse_genomes_project X 141260454 141261255 - protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0017036.1 MGP_C57BL6NJ_G0015081.1 mouse_genomes_project X 96280317 96280709 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096148.1 MGP_C57BL6NJ_G0036049.1 mouse_genomes_project X 3833088 3833936 + MGP_C57BL6NJ_P0096148 protein_coding protein_coding MGP_C57BL6NJ_T0017028.1 MGP_C57BL6NJ_G0015073.1 mouse_genomes_project X 94585336 94587407 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017070.1 MGP_C57BL6NJ_G0015115.1 mouse_genomes_project X 102599134 102599879 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016646.1 MGP_C57BL6NJ_G0014691.1 mouse_genomes_project X 602777 603017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017191.1 MGP_C57BL6NJ_G0015236.1 mouse_genomes_project X 127518102 127520139 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096569.1 MGP_C57BL6NJ_G0036192.1 mouse_genomes_project X 44712149 44723141 + MGP_C57BL6NJ_P0096569 Rab33a protein_coding protein_coding MGP_C57BL6NJ_T0016981.1 MGP_C57BL6NJ_G0015026.1 mouse_genomes_project X 87856901 87858067 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017254.1 MGP_C57BL6NJ_G0015299.1 mouse_genomes_project X 141448333 141449813 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019156.1 MGP_C57BL6NJ_G0016190.1 mouse_genomes_project X 155208831 155248245 + 9530051G07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0096593.1 MGP_C57BL6NJ_G0036199.1 mouse_genomes_project X 45662289 45694821 + MGP_C57BL6NJ_P0096593 Arhgap36 protein_coding protein_coding MGP_C57BL6NJ_T0096594.1 MGP_C57BL6NJ_G0036199.1 mouse_genomes_project X 45668794 45698557 + MGP_C57BL6NJ_P0096594 Arhgap36 protein_coding protein_coding MGP_C57BL6NJ_T0096595.1 MGP_C57BL6NJ_G0036199.1 mouse_genomes_project X 45668921 45698555 + MGP_C57BL6NJ_P0096595 Arhgap36 protein_coding protein_coding MGP_C57BL6NJ_T0096596.1 MGP_C57BL6NJ_G0036199.1 mouse_genomes_project X 45683997 45693577 + Arhgap36 protein_coding processed_transcript MGP_C57BL6NJ_T0096597.1 MGP_C57BL6NJ_G0036199.1 mouse_genomes_project X 45692213 45693782 + Arhgap36 protein_coding processed_transcript MGP_C57BL6NJ_T0098039.1 MGP_C57BL6NJ_G0036606.1 mouse_genomes_project X 138401002 138433567 + MGP_C57BL6NJ_P0098039 Fam199x protein_coding protein_coding MGP_C57BL6NJ_T0016930.1 MGP_C57BL6NJ_G0014975.1 mouse_genomes_project X 75863810 75864410 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011408.1 MGP_C57BL6NJ_G0009493.1 mouse_genomes_project X 49440421 49440506 - Mir542 miRNA miRNA MGP_C57BL6NJ_T0100830.1 MGP_C57BL6NJ_G0038876.1 mouse_genomes_project X 165615006 165615113 - Gm23901 snRNA snRNA MGP_C57BL6NJ_T0096849.1 MGP_C57BL6NJ_G0036293.1 mouse_genomes_project X 70150215 70155204 - MGP_C57BL6NJ_P0096849 Magea10 protein_coding protein_coding MGP_C57BL6NJ_T0103612.1 MGP_C57BL6NJ_G0041404.1 mouse_genomes_project X 149448577 149448905 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096636.1 MGP_C57BL6NJ_G0036216.1 mouse_genomes_project X 49156176 49164447 + MGP_C57BL6NJ_P0096636 Ccdc160 protein_coding protein_coding MGP_C57BL6NJ_T0016925.1 MGP_C57BL6NJ_G0014970.1 mouse_genomes_project X 74949129 74956900 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096363.1 MGP_C57BL6NJ_G0036121.1 mouse_genomes_project X 31395963 31583159 + MGP_C57BL6NJ_P0096363 Dock11 protein_coding protein_coding MGP_C57BL6NJ_T0096364.1 MGP_C57BL6NJ_G0036121.1 mouse_genomes_project X 31449428 31583153 + MGP_C57BL6NJ_P0096364 Dock11 protein_coding protein_coding MGP_C57BL6NJ_T0096365.1 MGP_C57BL6NJ_G0036121.1 mouse_genomes_project X 31478325 31487308 + Dock11 protein_coding retained_intron MGP_C57BL6NJ_T0096366.1 MGP_C57BL6NJ_G0036121.1 mouse_genomes_project X 31515452 31522745 + Dock11 protein_coding retained_intron MGP_C57BL6NJ_T0096367.1 MGP_C57BL6NJ_G0036121.1 mouse_genomes_project X 31547866 31582824 + MGP_C57BL6NJ_P0096367 Dock11 protein_coding protein_coding MGP_C57BL6NJ_T0098238.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152483478 152521065 + MGP_C57BL6NJ_P0098238 Pfkfb1 protein_coding protein_coding MGP_C57BL6NJ_T0098239.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152483505 152509094 + Pfkfb1 protein_coding processed_transcript MGP_C57BL6NJ_T0098240.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152485170 152543704 + MGP_C57BL6NJ_P0098240 Pfkfb1 protein_coding protein_coding MGP_C57BL6NJ_T0098241.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152489727 152543704 + MGP_C57BL6NJ_P0098241 Pfkfb1 protein_coding protein_coding MGP_C57BL6NJ_T0098242.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152489859 152543683 + Pfkfb1 protein_coding retained_intron MGP_C57BL6NJ_T0098243.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152510095 152520588 + Pfkfb1 protein_coding processed_transcript MGP_C57BL6NJ_T0098244.1 MGP_C57BL6NJ_G0036662.1 mouse_genomes_project X 152521222 152541803 + Pfkfb1 protein_coding processed_transcript MGP_C57BL6NJ_T0011411.1 MGP_C57BL6NJ_G0009496.1 mouse_genomes_project X 49445273 49445368 - Mir322 miRNA miRNA MGP_C57BL6NJ_T0097335.1 MGP_C57BL6NJ_G0036403.1 mouse_genomes_project X 92777665 92869561 + MGP_C57BL6NJ_P0097335 Pcyt1b protein_coding protein_coding MGP_C57BL6NJ_T0097336.1 MGP_C57BL6NJ_G0036403.1 mouse_genomes_project X 92797988 92869561 + MGP_C57BL6NJ_P0097336 Pcyt1b protein_coding protein_coding MGP_C57BL6NJ_T0097337.1 MGP_C57BL6NJ_G0036403.1 mouse_genomes_project X 92851174 92854469 + Pcyt1b protein_coding processed_transcript MGP_C57BL6NJ_T0017377.1 MGP_C57BL6NJ_G0015422.1 mouse_genomes_project X 165661817 165662217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097142.1 MGP_C57BL6NJ_G0036341.1 mouse_genomes_project X 72340566 72342361 - MGP_C57BL6NJ_P0097142 Slc10a3 protein_coding protein_coding MGP_C57BL6NJ_T0097143.1 MGP_C57BL6NJ_G0036341.1 mouse_genomes_project X 72340566 72344592 - MGP_C57BL6NJ_P0097143 Slc10a3 protein_coding protein_coding MGP_C57BL6NJ_T0097144.1 MGP_C57BL6NJ_G0036341.1 mouse_genomes_project X 72340566 72344651 - MGP_C57BL6NJ_P0097144 Slc10a3 protein_coding protein_coding MGP_C57BL6NJ_T0097145.1 MGP_C57BL6NJ_G0036341.1 mouse_genomes_project X 72340566 72344695 - MGP_C57BL6NJ_P0097145 Slc10a3 protein_coding protein_coding MGP_C57BL6NJ_T0017365.1 MGP_C57BL6NJ_G0015410.1 mouse_genomes_project X 162948910 162949392 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017120.1 MGP_C57BL6NJ_G0015165.1 mouse_genomes_project X 108783429 108783585 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100796.1 MGP_C57BL6NJ_G0038842.1 mouse_genomes_project X 91967434 91967539 + Gm25332 snRNA snRNA MGP_C57BL6NJ_T0098600.1 MGP_C57BL6NJ_G0036746.1 mouse_genomes_project X 167865609 167883454 + MGP_C57BL6NJ_P0098600 Fancb protein_coding protein_coding MGP_C57BL6NJ_T0098601.1 MGP_C57BL6NJ_G0036746.1 mouse_genomes_project X 167865609 167883454 + MGP_C57BL6NJ_P0098601 Fancb protein_coding protein_coding MGP_C57BL6NJ_T0098602.1 MGP_C57BL6NJ_G0036746.1 mouse_genomes_project X 167865729 167883457 + MGP_C57BL6NJ_P0098602 Fancb protein_coding protein_coding MGP_C57BL6NJ_T0096586.1 MGP_C57BL6NJ_G0036196.1 mouse_genomes_project X 44896498 44906439 + MGP_C57BL6NJ_P0096586 Rbmx2 protein_coding protein_coding MGP_C57BL6NJ_T0096587.1 MGP_C57BL6NJ_G0036196.1 mouse_genomes_project X 44901999 44904782 + Rbmx2 protein_coding processed_transcript MGP_C57BL6NJ_T0016689.1 MGP_C57BL6NJ_G0014734.1 mouse_genomes_project X 8357308 8360643 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099200.1 MGP_C57BL6NJ_G0037264.1 mouse_genomes_project X 137493983 137494102 + n-R5s12 rRNA rRNA MGP_C57BL6NJ_T0097536.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100680913 100705298 + MGP_C57BL6NJ_P0097536 Med12 protein_coding protein_coding MGP_C57BL6NJ_T0097537.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100681112 100705298 + MGP_C57BL6NJ_P0097537 Med12 protein_coding protein_coding MGP_C57BL6NJ_T0097538.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100681143 100705298 + MGP_C57BL6NJ_P0097538 Med12 protein_coding protein_coding MGP_C57BL6NJ_T0097539.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100681143 100705298 + MGP_C57BL6NJ_P0097539 Med12 protein_coding protein_coding MGP_C57BL6NJ_T0097540.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100689579 100691041 + Med12 protein_coding retained_intron MGP_C57BL6NJ_T0097541.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100690069 100690812 + Med12 protein_coding processed_transcript MGP_C57BL6NJ_T0097542.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100693856 100705298 + Med12 protein_coding retained_intron MGP_C57BL6NJ_T0097543.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100700966 100703900 + Med12 protein_coding processed_transcript MGP_C57BL6NJ_T0097544.1 MGP_C57BL6NJ_G0036454.1 mouse_genomes_project X 100704401 100705220 + Med12 protein_coding processed_transcript MGP_C57BL6NJ_T0097480.1 MGP_C57BL6NJ_G0036439.1 mouse_genomes_project X 99890237 99911242 + Dgat2l6 protein_coding retained_intron MGP_C57BL6NJ_T0097481.1 MGP_C57BL6NJ_G0036439.1 mouse_genomes_project X 99890240 99911495 + MGP_C57BL6NJ_P0097481 Dgat2l6 protein_coding protein_coding MGP_C57BL6NJ_T0097248.1 MGP_C57BL6NJ_G0036366.1 mouse_genomes_project X 74607037 74611667 + MGP_C57BL6NJ_P0097248 Cldn34b4 protein_coding protein_coding MGP_C57BL6NJ_T0097249.1 MGP_C57BL6NJ_G0036366.1 mouse_genomes_project X 74607139 74611576 + MGP_C57BL6NJ_P0097249 Cldn34b4 protein_coding protein_coding MGP_C57BL6NJ_T0017025.1 MGP_C57BL6NJ_G0015070.1 mouse_genomes_project X 94234856 94236101 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097283.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 81355325 81952199 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097284.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 81355358 83791018 + MGP_C57BL6NJ_P0097284 Dmd protein_coding protein_coding MGP_C57BL6NJ_T0097285.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 81450103 82222871 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097287.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 82363360 82403269 + Dmd protein_coding processed_transcript MGP_C57BL6NJ_T0097288.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 82445449 82446451 + Dmd protein_coding processed_transcript MGP_C57BL6NJ_T0097289.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 82606710 82853466 + Dmd protein_coding processed_transcript MGP_C57BL6NJ_T0097290.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83146361 83726429 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097291.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83324015 83550914 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097292.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83627559 83634862 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097293.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83627583 83721539 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097294.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83627586 83726427 + Dmd protein_coding retained_intron MGP_C57BL6NJ_T0097295.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83627677 83789916 + MGP_C57BL6NJ_P0097295 Dmd protein_coding protein_coding MGP_C57BL6NJ_T0097296.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83627677 83787375 + MGP_C57BL6NJ_P0097296 Dmd protein_coding protein_coding MGP_C57BL6NJ_T0097297.1 MGP_C57BL6NJ_G0036382.1 mouse_genomes_project X 83761099 83787714 + Dmd protein_coding processed_transcript MGP_C57BL6NJ_T0011454.1 MGP_C57BL6NJ_G0009539.1 mouse_genomes_project X 99740255 99740344 + Mir676 miRNA miRNA MGP_C57BL6NJ_T0095957.1 MGP_C57BL6NJ_G0036007.1 mouse_genomes_project X 1817101 1852656 - MGP_C57BL6NJ_P0095957 Clcn5 protein_coding protein_coding MGP_C57BL6NJ_T0095958.1 MGP_C57BL6NJ_G0036007.1 mouse_genomes_project X 1822760 1986605 - MGP_C57BL6NJ_P0095958 Clcn5 protein_coding protein_coding MGP_C57BL6NJ_T0095959.1 MGP_C57BL6NJ_G0036007.1 mouse_genomes_project X 1823468 1852615 - Clcn5 protein_coding retained_intron MGP_C57BL6NJ_T0095960.1 MGP_C57BL6NJ_G0036007.1 mouse_genomes_project X 1834490 1986730 - MGP_C57BL6NJ_P0095960 Clcn5 protein_coding protein_coding MGP_C57BL6NJ_T0095961.1 MGP_C57BL6NJ_G0036007.1 mouse_genomes_project X 1878657 1986542 - Clcn5 protein_coding processed_transcript MGP_C57BL6NJ_T0097550.1 MGP_C57BL6NJ_G0036456.1 mouse_genomes_project X 100787329 100796754 + MGP_C57BL6NJ_P0097550 Gjb1 protein_coding protein_coding MGP_C57BL6NJ_T0097551.1 MGP_C57BL6NJ_G0036456.1 mouse_genomes_project X 100788224 100796754 + MGP_C57BL6NJ_P0097551 Gjb1 protein_coding protein_coding MGP_C57BL6NJ_T0097552.1 MGP_C57BL6NJ_G0036456.1 mouse_genomes_project X 100794860 100796754 + MGP_C57BL6NJ_P0097552 Gjb1 protein_coding protein_coding MGP_C57BL6NJ_T0097314.1 MGP_C57BL6NJ_G0036390.1 mouse_genomes_project X 85431165 86870942 - MGP_C57BL6NJ_P0097314 Il1rapl1 protein_coding protein_coding MGP_C57BL6NJ_T0097315.1 MGP_C57BL6NJ_G0036390.1 mouse_genomes_project X 85437539 86638732 - MGP_C57BL6NJ_P0097315 Il1rapl1 protein_coding protein_coding MGP_C57BL6NJ_T0097316.1 MGP_C57BL6NJ_G0036390.1 mouse_genomes_project X 85460890 86870942 - MGP_C57BL6NJ_P0097316 Il1rapl1 protein_coding protein_coding MGP_C57BL6NJ_T0009621.1 MGP_C57BL6NJ_G0007715.1 mouse_genomes_project X 152763636 152764177 - Gm27191 lincRNA lincRNA MGP_C57BL6NJ_T0016883.1 MGP_C57BL6NJ_G0014928.1 mouse_genomes_project X 68053027 68054282 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100797.1 MGP_C57BL6NJ_G0038843.1 mouse_genomes_project X 98135282 98135389 + Gm26000 snRNA snRNA MGP_C57BL6NJ_T0097061.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228419 72230739 + MGP_C57BL6NJ_P0097061 Rpl10-ps3 protein_coding protein_coding MGP_C57BL6NJ_T0097062.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228464 72230629 + MGP_C57BL6NJ_P0097062 Rpl10-ps3 protein_coding protein_coding MGP_C57BL6NJ_T0097063.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228465 72230369 + Rpl10-ps3 protein_coding processed_transcript MGP_C57BL6NJ_T0097064.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228467 72230739 + MGP_C57BL6NJ_P0097064 Rpl10-ps3 protein_coding protein_coding MGP_C57BL6NJ_T0097065.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228563 72229827 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0097066.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228586 72230689 + MGP_C57BL6NJ_P0097066 Rpl10-ps3 protein_coding protein_coding MGP_C57BL6NJ_T0097067.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72228593 72230529 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0097068.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72229016 72230648 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0097069.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72229049 72229847 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0097070.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72229350 72230017 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0097071.1 MGP_C57BL6NJ_G0036332.1 mouse_genomes_project X 72229444 72230410 + Rpl10-ps3 protein_coding retained_intron MGP_C57BL6NJ_T0102367.1 MGP_C57BL6NJ_G0040309.1 mouse_genomes_project X 172439042 172442582 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0096418.1 MGP_C57BL6NJ_G0036144.1 mouse_genomes_project X 32849406 32850194 + MGP_C57BL6NJ_P0096418 Rhox2c protein_coding protein_coding MGP_C57BL6NJ_T0096741.1 MGP_C57BL6NJ_G0036255.1 mouse_genomes_project X 57077100 57486592 - MGP_C57BL6NJ_P0096741 Atp11c protein_coding protein_coding MGP_C57BL6NJ_T0096742.1 MGP_C57BL6NJ_G0036255.1 mouse_genomes_project X 57077103 57260916 - MGP_C57BL6NJ_P0096742 Atp11c protein_coding protein_coding MGP_C57BL6NJ_T0096743.1 MGP_C57BL6NJ_G0036255.1 mouse_genomes_project X 57077103 57260916 - MGP_C57BL6NJ_P0096743 Atp11c protein_coding protein_coding MGP_C57BL6NJ_T0096744.1 MGP_C57BL6NJ_G0036255.1 mouse_genomes_project X 57079433 57122172 - Atp11c protein_coding processed_transcript MGP_C57BL6NJ_T0096745.1 MGP_C57BL6NJ_G0036255.1 mouse_genomes_project X 57090358 57486592 - Atp11c protein_coding processed_transcript MGP_C57BL6NJ_T0011459.1 MGP_C57BL6NJ_G0009544.1 mouse_genomes_project X 103191812 103191861 + Mir374c miRNA miRNA MGP_C57BL6NJ_T0100764.1 MGP_C57BL6NJ_G0038810.1 mouse_genomes_project X 12507040 12507144 + Gm22294 snRNA snRNA MGP_C57BL6NJ_T0097529.1 MGP_C57BL6NJ_G0036451.1 mouse_genomes_project X 100667935 100670535 - Gm614 protein_coding processed_transcript MGP_C57BL6NJ_T0097530.1 MGP_C57BL6NJ_G0036451.1 mouse_genomes_project X 100667935 100670552 - MGP_C57BL6NJ_P0097530 Gm614 protein_coding protein_coding MGP_C57BL6NJ_T0017273.1 MGP_C57BL6NJ_G0015318.1 mouse_genomes_project X 143937752 143937965 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102063.1 MGP_C57BL6NJ_G0040109.1 mouse_genomes_project X 61821126 61821200 + Gm24598 snoRNA snoRNA MGP_C57BL6NJ_T0097228.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540007 73590610 + MGP_C57BL6NJ_P0097228 Brcc3 protein_coding protein_coding MGP_C57BL6NJ_T0097229.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540076 73588594 + MGP_C57BL6NJ_P0097229 Brcc3 protein_coding protein_coding MGP_C57BL6NJ_T0097230.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540079 73587341 + Brcc3 protein_coding retained_intron MGP_C57BL6NJ_T0097231.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540089 73588317 + MGP_C57BL6NJ_P0097231 Brcc3 protein_coding protein_coding MGP_C57BL6NJ_T0097232.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540095 73562190 + MGP_C57BL6NJ_P0097232 Brcc3 protein_coding protein_coding MGP_C57BL6NJ_T0097233.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73540686 73559674 + MGP_C57BL6NJ_P0097233 Brcc3 protein_coding protein_coding MGP_C57BL6NJ_T0097234.1 MGP_C57BL6NJ_G0036359.1 mouse_genomes_project X 73558176 73587833 + Brcc3 protein_coding retained_intron MGP_C57BL6NJ_T0016781.1 MGP_C57BL6NJ_G0014826.1 mouse_genomes_project X 43878225 43879786 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016699.1 MGP_C57BL6NJ_G0014744.1 mouse_genomes_project X 11522553 11522805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017288.1 MGP_C57BL6NJ_G0015333.1 mouse_genomes_project X 146435742 146436343 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097515.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100470067 100476196 - Slc7a3 protein_coding retained_intron MGP_C57BL6NJ_T0097516.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100470078 100476196 - MGP_C57BL6NJ_P0097516 Slc7a3 protein_coding protein_coding MGP_C57BL6NJ_T0097517.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100470079 100479358 - MGP_C57BL6NJ_P0097517 Slc7a3 protein_coding protein_coding MGP_C57BL6NJ_T0097518.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100470079 100476196 - MGP_C57BL6NJ_P0097518 Slc7a3 protein_coding protein_coding MGP_C57BL6NJ_T0097519.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100470663 100475031 - Slc7a3 protein_coding processed_transcript MGP_C57BL6NJ_T0097520.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100472427 100473091 - Slc7a3 protein_coding retained_intron MGP_C57BL6NJ_T0097521.1 MGP_C57BL6NJ_G0036448.1 mouse_genomes_project X 100472615 100473317 - Slc7a3 protein_coding retained_intron MGP_C57BL6NJ_T0016859.1 MGP_C57BL6NJ_G0014904.1 mouse_genomes_project X 62428066 62428403 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096866.1 MGP_C57BL6NJ_G0036300.1 mouse_genomes_project X 70856773 70861322 + MGP_C57BL6NJ_P0096866 Pnma3 protein_coding protein_coding MGP_C57BL6NJ_T0096082.1 MGP_C57BL6NJ_G0036030.1 mouse_genomes_project X 2622774 2623160 + MGP_C57BL6NJ_P0096082 protein_coding protein_coding MGP_C57BL6NJ_T0011415.1 MGP_C57BL6NJ_G0009500.1 mouse_genomes_project X 56521866 56521966 - Gm44500 miRNA miRNA MGP_C57BL6NJ_T0098107.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142138901 142142042 - Tsc22d3 protein_coding processed_transcript MGP_C57BL6NJ_T0098108.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142138901 142142561 - MGP_C57BL6NJ_P0098108 Tsc22d3 protein_coding protein_coding MGP_C57BL6NJ_T0098109.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142138910 142142475 - Tsc22d3 protein_coding retained_intron MGP_C57BL6NJ_T0098110.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142139635 142199798 - MGP_C57BL6NJ_P0098110 Tsc22d3 protein_coding protein_coding MGP_C57BL6NJ_T0098111.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142139724 142147803 - MGP_C57BL6NJ_P0098111 Tsc22d3 protein_coding protein_coding MGP_C57BL6NJ_T0098112.1 MGP_C57BL6NJ_G0036628.1 mouse_genomes_project X 142142476 142147994 - Tsc22d3 protein_coding processed_transcript MGP_C57BL6NJ_T0016848.1 MGP_C57BL6NJ_G0014893.1 mouse_genomes_project X 59385993 59386715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017250.1 MGP_C57BL6NJ_G0015295.1 mouse_genomes_project X 140783530 140784203 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017322.1 MGP_C57BL6NJ_G0015367.1 mouse_genomes_project X 155288050 155288582 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097416.1 MGP_C57BL6NJ_G0036423.1 mouse_genomes_project X 95610625 95761855 - MGP_C57BL6NJ_P0097416 Hsf3 protein_coding protein_coding MGP_C57BL6NJ_T0097417.1 MGP_C57BL6NJ_G0036423.1 mouse_genomes_project X 95611314 95661181 - MGP_C57BL6NJ_P0097417 Hsf3 protein_coding protein_coding MGP_C57BL6NJ_T0097418.1 MGP_C57BL6NJ_G0036423.1 mouse_genomes_project X 95611812 95761844 - MGP_C57BL6NJ_P0097418 Hsf3 protein_coding protein_coding MGP_C57BL6NJ_T0097419.1 MGP_C57BL6NJ_G0036423.1 mouse_genomes_project X 95611970 95673731 - MGP_C57BL6NJ_P0097419 Hsf3 protein_coding protein_coding MGP_C57BL6NJ_T0097420.1 MGP_C57BL6NJ_G0036423.1 mouse_genomes_project X 95624931 95643823 - Hsf3 protein_coding retained_intron MGP_C57BL6NJ_T0017197.1 MGP_C57BL6NJ_G0015242.1 mouse_genomes_project X 130299878 130300880 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011384.1 MGP_C57BL6NJ_G0009469.1 mouse_genomes_project X 14369681 14369776 - Mir221 miRNA miRNA MGP_C57BL6NJ_T0017295.1 MGP_C57BL6NJ_G0015340.1 mouse_genomes_project X 147602211 147602815 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096466.1 MGP_C57BL6NJ_G0036169.1 mouse_genomes_project X 34547181 34729654 + MGP_C57BL6NJ_P0096466 6030498E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0096467.1 MGP_C57BL6NJ_G0036169.1 mouse_genomes_project X 34725066 34726538 + MGP_C57BL6NJ_P0096467 6030498E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0096835.1 MGP_C57BL6NJ_G0036287.1 mouse_genomes_project X 69650101 69668445 + MGP_C57BL6NJ_P0096835 Gm1141 protein_coding protein_coding MGP_C57BL6NJ_T0096836.1 MGP_C57BL6NJ_G0036287.1 mouse_genomes_project X 69655772 69664499 + MGP_C57BL6NJ_P0096836 Gm1141 protein_coding protein_coding MGP_C57BL6NJ_T0011443.1 MGP_C57BL6NJ_G0009528.1 mouse_genomes_project X 70766750 70766816 + Mir2137 miRNA miRNA MGP_C57BL6NJ_T0017090.1 MGP_C57BL6NJ_G0015135.1 mouse_genomes_project X 103522464 103523478 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096561.1 MGP_C57BL6NJ_G0036190.1 mouse_genomes_project X 44593770 44642872 - MGP_C57BL6NJ_P0096561 Elf4 protein_coding protein_coding MGP_C57BL6NJ_T0096562.1 MGP_C57BL6NJ_G0036190.1 mouse_genomes_project X 44593773 44651845 - MGP_C57BL6NJ_P0096562 Elf4 protein_coding protein_coding MGP_C57BL6NJ_T0096563.1 MGP_C57BL6NJ_G0036190.1 mouse_genomes_project X 44599382 44651845 - MGP_C57BL6NJ_P0096563 Elf4 protein_coding protein_coding MGP_C57BL6NJ_T0017102.1 MGP_C57BL6NJ_G0015147.1 mouse_genomes_project X 105407138 105407979 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017040.1 MGP_C57BL6NJ_G0015085.1 mouse_genomes_project X 97342706 97344591 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097109.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72264834 72273806 + MGP_C57BL6NJ_P0097109 Gdi1 protein_coding protein_coding MGP_C57BL6NJ_T0097110.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72264848 72273804 + Gdi1 protein_coding retained_intron MGP_C57BL6NJ_T0097111.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72265092 72268956 + Gdi1 protein_coding processed_transcript MGP_C57BL6NJ_T0097112.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72265103 72273802 + Gdi1 protein_coding retained_intron MGP_C57BL6NJ_T0097113.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72265149 72269093 + MGP_C57BL6NJ_P0097113 Gdi1 protein_coding protein_coding MGP_C57BL6NJ_T0097114.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72265664 72269134 + Gdi1 protein_coding processed_transcript MGP_C57BL6NJ_T0097115.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72269097 72271511 + Gdi1 protein_coding retained_intron MGP_C57BL6NJ_T0097116.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72271104 72273100 + MGP_C57BL6NJ_P0097116 Gdi1 protein_coding protein_coding MGP_C57BL6NJ_T0097117.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72271795 72272880 + Gdi1 protein_coding processed_transcript MGP_C57BL6NJ_T0097118.1 MGP_C57BL6NJ_G0036336.1 mouse_genomes_project X 72272324 72272977 + Gdi1 protein_coding processed_transcript MGP_C57BL6NJ_T0103611.1 MGP_C57BL6NJ_G0041403.1 mouse_genomes_project X 149436866 149438781 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096894.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71574474 71585129 + MGP_C57BL6NJ_P0096894 Slc6a8 protein_coding protein_coding MGP_C57BL6NJ_T0096895.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71576333 71583918 + MGP_C57BL6NJ_P0096895 Slc6a8 protein_coding protein_coding MGP_C57BL6NJ_T0096896.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71576415 71585132 + MGP_C57BL6NJ_P0096896 Slc6a8 protein_coding protein_coding MGP_C57BL6NJ_T0096897.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71576545 71579952 + Slc6a8 protein_coding retained_intron MGP_C57BL6NJ_T0096898.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71578133 71579971 + MGP_C57BL6NJ_P0096898 Slc6a8 protein_coding protein_coding MGP_C57BL6NJ_T0096899.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71579472 71585129 + MGP_C57BL6NJ_P0096899 Slc6a8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096900.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71579685 71582395 + Slc6a8 protein_coding retained_intron MGP_C57BL6NJ_T0096901.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71580780 71583727 + Slc6a8 protein_coding retained_intron MGP_C57BL6NJ_T0096902.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71581504 71582626 + Slc6a8 protein_coding processed_transcript MGP_C57BL6NJ_T0096903.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71581519 71582542 + Slc6a8 protein_coding retained_intron MGP_C57BL6NJ_T0096904.1 MGP_C57BL6NJ_G0036311.1 mouse_genomes_project X 71581519 71582629 + Slc6a8 protein_coding retained_intron MGP_C57BL6NJ_T0096338.1 MGP_C57BL6NJ_G0036111.1 mouse_genomes_project X 16421942 16431998 - MGP_C57BL6NJ_P0096338 Zfp300 protein_coding protein_coding MGP_C57BL6NJ_T0096339.1 MGP_C57BL6NJ_G0036111.1 mouse_genomes_project X 16424354 16431902 - MGP_C57BL6NJ_P0096339 Zfp300 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096340.1 MGP_C57BL6NJ_G0036111.1 mouse_genomes_project X 16426710 16431755 - Zfp300 protein_coding retained_intron MGP_C57BL6NJ_T0096341.1 MGP_C57BL6NJ_G0036111.1 mouse_genomes_project X 16427018 16432296 - Zfp300 protein_coding processed_transcript MGP_C57BL6NJ_T0096368.1 MGP_C57BL6NJ_G0036122.1 mouse_genomes_project X 31622628 31683379 + MGP_C57BL6NJ_P0096368 Il13ra1 protein_coding protein_coding MGP_C57BL6NJ_T0011406.1 MGP_C57BL6NJ_G0009491.1 mouse_genomes_project X 49439179 49439270 - Mir450-1 miRNA miRNA MGP_C57BL6NJ_T0009564.1 MGP_C57BL6NJ_G0007677.1 mouse_genomes_project X 32367540 32369906 - Mdrl lincRNA lincRNA MGP_C57BL6NJ_T0102109.1 MGP_C57BL6NJ_G0040155.1 mouse_genomes_project X 165505155 165505274 + Gm23786 snoRNA snoRNA MGP_C57BL6NJ_T0017104.1 MGP_C57BL6NJ_G0015149.1 mouse_genomes_project X 105900854 105901467 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097037.1 MGP_C57BL6NJ_G0036328.1 mouse_genomes_project X 72105426 72122562 - MGP_C57BL6NJ_P0097037 Tex28 protein_coding protein_coding MGP_C57BL6NJ_T0097038.1 MGP_C57BL6NJ_G0036328.1 mouse_genomes_project X 72105426 72122562 - MGP_C57BL6NJ_P0097038 Tex28 protein_coding protein_coding MGP_C57BL6NJ_T0100759.1 MGP_C57BL6NJ_G0038805.1 mouse_genomes_project X 6807312 6807419 + Gm26314 snRNA snRNA MGP_C57BL6NJ_T0017272.1 MGP_C57BL6NJ_G0015317.1 mouse_genomes_project X 143929016 143929507 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096417.1 MGP_C57BL6NJ_G0036143.1 mouse_genomes_project X 32803859 32812295 - MGP_C57BL6NJ_P0096417 Rhox1 protein_coding protein_coding MGP_C57BL6NJ_T0005727.1 MGP_C57BL6NJ_G0004826.1 mouse_genomes_project X 2341154 2344957 - Gm14703 antisense antisense MGP_C57BL6NJ_T0097855.1 MGP_C57BL6NJ_G0036552.1 mouse_genomes_project X 134902274 134909635 - MGP_C57BL6NJ_P0097855 Tspan6 protein_coding protein_coding MGP_C57BL6NJ_T0097856.1 MGP_C57BL6NJ_G0036552.1 mouse_genomes_project X 134903908 134909500 - MGP_C57BL6NJ_P0097856 Tspan6 protein_coding protein_coding MGP_C57BL6NJ_T0097857.1 MGP_C57BL6NJ_G0036552.1 mouse_genomes_project X 134905727 134909500 - MGP_C57BL6NJ_P0097857 Tspan6 protein_coding protein_coding MGP_C57BL6NJ_T0097858.1 MGP_C57BL6NJ_G0036552.1 mouse_genomes_project X 134907924 134909319 - Tspan6 protein_coding processed_transcript MGP_C57BL6NJ_T0016928.1 MGP_C57BL6NJ_G0014973.1 mouse_genomes_project X 75464928 75465912 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097865.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071400 135098282 + MGP_C57BL6NJ_P0097865 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0097866.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071410 135099055 + MGP_C57BL6NJ_P0097866 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0097867.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071428 135088106 + MGP_C57BL6NJ_P0097867 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0097868.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071524 135073710 + Cstf2 protein_coding processed_transcript MGP_C57BL6NJ_T0097869.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071547 135099055 + Cstf2 protein_coding retained_intron MGP_C57BL6NJ_T0097870.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135071547 135074847 + MGP_C57BL6NJ_P0097870 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0097871.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135074610 135086516 + MGP_C57BL6NJ_P0097871 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0097872.1 MGP_C57BL6NJ_G0036555.1 mouse_genomes_project X 135078474 135086553 + MGP_C57BL6NJ_P0097872 Cstf2 protein_coding protein_coding MGP_C57BL6NJ_T0098430.1 MGP_C57BL6NJ_G0036707.1 mouse_genomes_project X 160311811 160563383 - MGP_C57BL6NJ_P0098430 Cnksr2 protein_coding protein_coding MGP_C57BL6NJ_T0098431.1 MGP_C57BL6NJ_G0036707.1 mouse_genomes_project X 160323118 160563383 - MGP_C57BL6NJ_P0098431 Cnksr2 protein_coding protein_coding MGP_C57BL6NJ_T0098432.1 MGP_C57BL6NJ_G0036707.1 mouse_genomes_project X 160351343 160365400 - Cnksr2 protein_coding retained_intron MGP_C57BL6NJ_T0011447.1 MGP_C57BL6NJ_G0009532.1 mouse_genomes_project X 72280006 72280074 + Mir7092 miRNA miRNA MGP_C57BL6NJ_T0016662.1 MGP_C57BL6NJ_G0014707.1 mouse_genomes_project X 3684881 3686364 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017353.1 MGP_C57BL6NJ_G0015398.1 mouse_genomes_project X 160775691 160776265 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017058.1 MGP_C57BL6NJ_G0015103.1 mouse_genomes_project X 101217820 101220912 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097773.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111250234 111344820 - MGP_C57BL6NJ_P0097773 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097774.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111250234 111344972 - MGP_C57BL6NJ_P0097774 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097775.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111250235 111374911 - MGP_C57BL6NJ_P0097775 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097776.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111250235 111344972 - MGP_C57BL6NJ_P0097776 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097777.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111251822 111344882 - MGP_C57BL6NJ_P0097777 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097778.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111316346 111374890 - MGP_C57BL6NJ_P0097778 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097779.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111316378 111345874 - MGP_C57BL6NJ_P0097779 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097780.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111317284 111430438 - MGP_C57BL6NJ_P0097780 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097781.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111321254 111344416 - MGP_C57BL6NJ_P0097781 Rps6ka6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097782.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111321331 111437364 - MGP_C57BL6NJ_P0097782 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097783.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111328271 111437376 - MGP_C57BL6NJ_P0097783 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0097784.1 MGP_C57BL6NJ_G0036523.1 mouse_genomes_project X 111332364 111435759 - MGP_C57BL6NJ_P0097784 Rps6ka6 protein_coding protein_coding MGP_C57BL6NJ_T0009641.1 MGP_C57BL6NJ_G0007727.1 mouse_genomes_project X 172516369 172548615 + Gm15245 lincRNA lincRNA MGP_C57BL6NJ_T0096460.1 MGP_C57BL6NJ_G0036167.1 mouse_genomes_project X 34341766 34358900 + Mcts1 protein_coding processed_transcript MGP_C57BL6NJ_T0096461.1 MGP_C57BL6NJ_G0036167.1 mouse_genomes_project X 34341843 34360493 + MGP_C57BL6NJ_P0096461 Mcts1 protein_coding protein_coding MGP_C57BL6NJ_T0096462.1 MGP_C57BL6NJ_G0036167.1 mouse_genomes_project X 34342487 34353477 + Mcts1 protein_coding processed_transcript MGP_C57BL6NJ_T0096463.1 MGP_C57BL6NJ_G0036167.1 mouse_genomes_project X 34355789 34360493 + Mcts1 protein_coding processed_transcript MGP_C57BL6NJ_T0096464.1 MGP_C57BL6NJ_G0036167.1 mouse_genomes_project X 34356869 34360467 + Mcts1 protein_coding processed_transcript MGP_C57BL6NJ_T0016980.1 MGP_C57BL6NJ_G0015025.1 mouse_genomes_project X 87804548 87804821 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016891.1 MGP_C57BL6NJ_G0014936.1 mouse_genomes_project X 68293870 68294215 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016657.1 MGP_C57BL6NJ_G0014702.1 mouse_genomes_project X 2767675 2768104 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096950.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71815878 71835844 - MGP_C57BL6NJ_P0096950 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096955.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818788 71835838 - MGP_C57BL6NJ_P0096955 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096956.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818794 71835804 - MGP_C57BL6NJ_P0096956 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096957.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096958.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096959.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096960.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096961.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096962.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - MGP_C57BL6NJ_P0096962 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096963.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818968 71835779 - MGP_C57BL6NJ_P0096963 Arhgap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096964.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71818974 71835779 - MGP_C57BL6NJ_P0096964 Arhgap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096965.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71819112 71835737 - MGP_C57BL6NJ_P0096965 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096966.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71820847 71821863 - Arhgap4 protein_coding processed_transcript MGP_C57BL6NJ_T0096967.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71821250 71822503 - MGP_C57BL6NJ_P0096967 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096968.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71821307 71824063 - MGP_C57BL6NJ_P0096968 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096969.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71823749 71847150 - Arhgap4 protein_coding retained_intron MGP_C57BL6NJ_T0096970.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71823753 71825175 - Arhgap4 protein_coding processed_transcript MGP_C57BL6NJ_T0096971.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71824545 71830164 - MGP_C57BL6NJ_P0096971 Arhgap4 protein_coding protein_coding MGP_C57BL6NJ_T0096972.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71830892 71835806 - Arhgap4 protein_coding processed_transcript MGP_C57BL6NJ_T0096973.1 MGP_C57BL6NJ_G0036320.1 mouse_genomes_project X 71831285 71835801 - MGP_C57BL6NJ_P0096973 Arhgap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017121.1 MGP_C57BL6NJ_G0015166.1 mouse_genomes_project X 108898849 108899661 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011405.1 MGP_C57BL6NJ_G0009490.1 mouse_genomes_project X 49439022 49439104 - Mir450b miRNA miRNA MGP_C57BL6NJ_T0017048.1 MGP_C57BL6NJ_G0015093.1 mouse_genomes_project X 99524545 99524867 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098496.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163427720 163592644 - MGP_C57BL6NJ_P0098496 Cdkl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098497.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163427720 163592611 - MGP_C57BL6NJ_P0098497 Cdkl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098498.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163441874 163655906 - MGP_C57BL6NJ_P0098498 Cdkl5 protein_coding protein_coding MGP_C57BL6NJ_T0098500.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163456705 163474737 - Cdkl5 protein_coding processed_transcript MGP_C57BL6NJ_T0098501.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163458946 163592611 - MGP_C57BL6NJ_P0098501 Cdkl5 protein_coding protein_coding MGP_C57BL6NJ_T0098502.1 MGP_C57BL6NJ_G0036719.1 mouse_genomes_project X 163506814 163510358 - Cdkl5 protein_coding retained_intron MGP_C57BL6NJ_T0098047.1 MGP_C57BL6NJ_G0036610.1 mouse_genomes_project X 140420124 140517490 + MGP_C57BL6NJ_P0098047 Nrk protein_coding protein_coding MGP_C57BL6NJ_T0098048.1 MGP_C57BL6NJ_G0036610.1 mouse_genomes_project X 140420125 140474080 + Nrk protein_coding processed_transcript MGP_C57BL6NJ_T0098049.1 MGP_C57BL6NJ_G0036610.1 mouse_genomes_project X 140420125 140518930 + MGP_C57BL6NJ_P0098049 Nrk protein_coding protein_coding MGP_C57BL6NJ_T0098050.1 MGP_C57BL6NJ_G0036610.1 mouse_genomes_project X 140420125 140518202 + MGP_C57BL6NJ_P0098050 Nrk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098051.1 MGP_C57BL6NJ_G0036610.1 mouse_genomes_project X 140491031 140498092 + Nrk protein_coding retained_intron MGP_C57BL6NJ_T0017299.1 MGP_C57BL6NJ_G0015344.1 mouse_genomes_project X 147898176 147899222 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017140.1 MGP_C57BL6NJ_G0015185.1 mouse_genomes_project X 112942629 112943572 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097724.1 MGP_C57BL6NJ_G0036504.1 mouse_genomes_project X 106405625 106533065 + MGP_C57BL6NJ_P0097724 Gm5127 protein_coding protein_coding MGP_C57BL6NJ_T0097725.1 MGP_C57BL6NJ_G0036504.1 mouse_genomes_project X 106405625 106532370 + MGP_C57BL6NJ_P0097725 Gm5127 protein_coding protein_coding MGP_C57BL6NJ_T0103590.1 MGP_C57BL6NJ_G0041382.1 mouse_genomes_project X 76105436 76114847 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016770.1 MGP_C57BL6NJ_G0014815.1 mouse_genomes_project X 40521366 40521706 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097446.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98267894 98276681 + MGP_C57BL6NJ_P0097446 Yipf6 protein_coding protein_coding MGP_C57BL6NJ_T0097447.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98268873 98275185 + MGP_C57BL6NJ_P0097447 Yipf6 protein_coding protein_coding MGP_C57BL6NJ_T0097448.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98268901 98271482 + MGP_C57BL6NJ_P0097448 Yipf6 protein_coding protein_coding MGP_C57BL6NJ_T0097449.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98269361 98276456 + Yipf6 protein_coding retained_intron MGP_C57BL6NJ_T0097450.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98269361 98280567 + MGP_C57BL6NJ_P0097450 Yipf6 protein_coding protein_coding MGP_C57BL6NJ_T0097451.1 MGP_C57BL6NJ_G0036430.1 mouse_genomes_project X 98269807 98275585 + Yipf6 protein_coding retained_intron MGP_C57BL6NJ_T0017296.1 MGP_C57BL6NJ_G0015341.1 mouse_genomes_project X 147610060 147610895 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016895.1 MGP_C57BL6NJ_G0014940.1 mouse_genomes_project X 69433714 69433929 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016771.1 MGP_C57BL6NJ_G0014816.1 mouse_genomes_project X 40879496 40880466 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005761.1 MGP_C57BL6NJ_G0004852.1 mouse_genomes_project X 98815187 98816916 + Gm14808 antisense antisense MGP_C57BL6NJ_T0096613.1 MGP_C57BL6NJ_G0036207.1 mouse_genomes_project X 47153566 47201172 - MGP_C57BL6NJ_P0096613 Frmd7 protein_coding protein_coding MGP_C57BL6NJ_T0096614.1 MGP_C57BL6NJ_G0036207.1 mouse_genomes_project X 47153566 47201172 - MGP_C57BL6NJ_P0096614 Frmd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016860.1 MGP_C57BL6NJ_G0014905.1 mouse_genomes_project X 63325005 63327133 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016942.1 MGP_C57BL6NJ_G0014987.1 mouse_genomes_project X 77187651 77187873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019100.1 MGP_C57BL6NJ_G0016172.1 mouse_genomes_project X 50152228 50153588 - processed_transcript TEC MGP_C57BL6NJ_T0019101.1 MGP_C57BL6NJ_G0016172.1 mouse_genomes_project X 50153241 50162468 - processed_transcript lincRNA MGP_C57BL6NJ_T0098442.1 MGP_C57BL6NJ_G0036709.1 mouse_genomes_project X 161954891 161959272 + Eif1ax protein_coding retained_intron MGP_C57BL6NJ_T0098443.1 MGP_C57BL6NJ_G0036709.1 mouse_genomes_project X 161954891 161975404 + MGP_C57BL6NJ_P0098443 Eif1ax protein_coding protein_coding MGP_C57BL6NJ_T0100813.1 MGP_C57BL6NJ_G0038859.1 mouse_genomes_project X 116455454 116455618 + Gm24624 snRNA snRNA MGP_C57BL6NJ_T0019129.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712206 108775979 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019130.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712230 108775773 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019131.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712306 108869292 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019132.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712385 108775766 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019133.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712392 108717251 + processed_transcript retained_intron MGP_C57BL6NJ_T0019134.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712407 108760920 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019135.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108712423 108761124 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019136.1 MGP_C57BL6NJ_G0016180.1 mouse_genomes_project X 108793633 108870004 + processed_transcript processed_transcript MGP_C57BL6NJ_T0016982.1 MGP_C57BL6NJ_G0015027.1 mouse_genomes_project X 87884663 87885622 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096748.1 MGP_C57BL6NJ_G0036258.1 mouse_genomes_project X 58102424 58104929 - MGP_C57BL6NJ_P0096748 Cdr1 protein_coding protein_coding MGP_C57BL6NJ_T0009563.1 MGP_C57BL6NJ_G0007676.1 mouse_genomes_project X 16740956 16746125 - Gm26593 lincRNA lincRNA MGP_C57BL6NJ_T0097958.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136882748 136903942 + Gprasp1 protein_coding processed_transcript MGP_C57BL6NJ_T0097960.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136882748 136963815 + MGP_C57BL6NJ_P0097960 Gprasp1 protein_coding protein_coding MGP_C57BL6NJ_T0097961.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136882748 136963815 + MGP_C57BL6NJ_P0097961 Gprasp1 protein_coding protein_coding MGP_C57BL6NJ_T0097962.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136882748 136963815 + MGP_C57BL6NJ_P0097962 Gprasp1 protein_coding protein_coding MGP_C57BL6NJ_T0097963.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136882750 136923578 + Gprasp1 protein_coding processed_transcript MGP_C57BL6NJ_T0097966.1 MGP_C57BL6NJ_G0036579.1 mouse_genomes_project X 136957725 136963807 + MGP_C57BL6NJ_P0097966 Gprasp1 protein_coding protein_coding MGP_C57BL6NJ_T0017286.1 MGP_C57BL6NJ_G0015331.1 mouse_genomes_project X 146130570 146131701 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016915.1 MGP_C57BL6NJ_G0014960.1 mouse_genomes_project X 74077274 74078585 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098666.1 MGP_C57BL6NJ_G0036764.1 mouse_genomes_project X 172317729 172381190 - MGP_C57BL6NJ_P0098666 Hccs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098667.1 MGP_C57BL6NJ_G0036764.1 mouse_genomes_project X 172372347 172381098 - MGP_C57BL6NJ_P0098667 Hccs protein_coding protein_coding MGP_C57BL6NJ_T0098668.1 MGP_C57BL6NJ_G0036764.1 mouse_genomes_project X 172372347 172381112 - MGP_C57BL6NJ_P0098668 Hccs protein_coding protein_coding MGP_C57BL6NJ_T0102090.1 MGP_C57BL6NJ_G0040136.1 mouse_genomes_project X 129927111 129927243 - Gm26029 snoRNA snoRNA MGP_C57BL6NJ_T0103609.1 MGP_C57BL6NJ_G0041401.1 mouse_genomes_project X 136862618 136866467 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016705.1 MGP_C57BL6NJ_G0014750.1 mouse_genomes_project X 12855702 12857557 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011383.1 MGP_C57BL6NJ_G0009468.1 mouse_genomes_project X 10833053 10833117 + Gm22464 miRNA miRNA MGP_C57BL6NJ_T0017149.1 MGP_C57BL6NJ_G0015194.1 mouse_genomes_project X 114909826 114910033 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017259.1 MGP_C57BL6NJ_G0015304.1 mouse_genomes_project X 142421894 142422480 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016814.1 MGP_C57BL6NJ_G0014859.1 mouse_genomes_project X 54353562 54353808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012038.1 MGP_C57BL6NJ_G0010123.1 mouse_genomes_project X 130082303 130082581 - Gm22225 misc_RNA misc_RNA MGP_C57BL6NJ_T0016644.1 MGP_C57BL6NJ_G0014689.1 mouse_genomes_project X 465275 467099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102346.1 MGP_C57BL6NJ_G0040296.1 mouse_genomes_project X 70657486 70658385 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102347.1 MGP_C57BL6NJ_G0040296.1 mouse_genomes_project X 70657486 70658218 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0097986.1 MGP_C57BL6NJ_G0036588.1 mouse_genomes_project X 137422743 137425887 - MGP_C57BL6NJ_P0097986 Bex1 protein_coding protein_coding MGP_C57BL6NJ_T0097987.1 MGP_C57BL6NJ_G0036588.1 mouse_genomes_project X 137422744 137425817 - MGP_C57BL6NJ_P0097987 Bex1 protein_coding protein_coding MGP_C57BL6NJ_T0097988.1 MGP_C57BL6NJ_G0036588.1 mouse_genomes_project X 137422784 137425858 - MGP_C57BL6NJ_P0097988 Bex1 protein_coding protein_coding MGP_C57BL6NJ_T0097989.1 MGP_C57BL6NJ_G0036588.1 mouse_genomes_project X 137423315 137425754 - Bex1 protein_coding retained_intron MGP_C57BL6NJ_T0017354.1 MGP_C57BL6NJ_G0015399.1 mouse_genomes_project X 160835374 160835951 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096152.1 MGP_C57BL6NJ_G0036053.1 mouse_genomes_project X 3957578 4034003 + MGP_C57BL6NJ_P0096152 Lancl3 protein_coding protein_coding MGP_C57BL6NJ_T0097979.1 MGP_C57BL6NJ_G0036586.1 mouse_genomes_project X 137374393 137377652 - MGP_C57BL6NJ_P0097979 Tceal8 protein_coding protein_coding MGP_C57BL6NJ_T0097980.1 MGP_C57BL6NJ_G0036586.1 mouse_genomes_project X 137375490 137377743 - MGP_C57BL6NJ_P0097980 Tceal8 protein_coding protein_coding MGP_C57BL6NJ_T0097981.1 MGP_C57BL6NJ_G0036586.1 mouse_genomes_project X 137376294 137377617 - MGP_C57BL6NJ_P0097981 Tceal8 protein_coding protein_coding MGP_C57BL6NJ_T0097982.1 MGP_C57BL6NJ_G0036586.1 mouse_genomes_project X 137376398 137377602 - MGP_C57BL6NJ_P0097982 Tceal8 protein_coding protein_coding MGP_C57BL6NJ_T0097279.1 MGP_C57BL6NJ_G0036380.1 mouse_genomes_project X 79414445 79439405 + Tmem47 protein_coding processed_transcript MGP_C57BL6NJ_T0097280.1 MGP_C57BL6NJ_G0036380.1 mouse_genomes_project X 79414452 79440360 + MGP_C57BL6NJ_P0097280 Tmem47 protein_coding protein_coding MGP_C57BL6NJ_T0097281.1 MGP_C57BL6NJ_G0036380.1 mouse_genomes_project X 79414463 79442501 + MGP_C57BL6NJ_P0097281 Tmem47 protein_coding protein_coding MGP_C57BL6NJ_T0011460.1 MGP_C57BL6NJ_G0009545.1 mouse_genomes_project X 103724909 103725000 + Gm24993 miRNA miRNA MGP_C57BL6NJ_T0099231.1 MGP_C57BL6NJ_G0037295.1 mouse_genomes_project X 80565231 80565450 + Gm26174 ribozyme ribozyme MGP_C57BL6NJ_T0096606.1 MGP_C57BL6NJ_G0036203.1 mouse_genomes_project X 46117826 46118759 - MGP_C57BL6NJ_P0096606 Olfr1322 protein_coding protein_coding MGP_C57BL6NJ_T0016648.1 MGP_C57BL6NJ_G0014693.1 mouse_genomes_project X 1804230 1804661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017037.1 MGP_C57BL6NJ_G0015082.1 mouse_genomes_project X 96363117 96363922 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097610.1 MGP_C57BL6NJ_G0036467.1 mouse_genomes_project X 101597723 101619328 + MGP_C57BL6NJ_P0097610 Pin4 protein_coding protein_coding MGP_C57BL6NJ_T0097611.1 MGP_C57BL6NJ_G0036467.1 mouse_genomes_project X 101597845 101619325 + Pin4 protein_coding processed_transcript MGP_C57BL6NJ_T0097031.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72082248 72105243 + MGP_C57BL6NJ_P0097031 Opn1mw protein_coding protein_coding MGP_C57BL6NJ_T0097032.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72082250 72105234 + MGP_C57BL6NJ_P0097032 Opn1mw protein_coding protein_coding MGP_C57BL6NJ_T0097033.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72082265 72098032 + Opn1mw protein_coding processed_transcript MGP_C57BL6NJ_T0097034.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72092385 72105239 + Opn1mw protein_coding processed_transcript MGP_C57BL6NJ_T0097035.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72092406 72094349 + Opn1mw protein_coding processed_transcript MGP_C57BL6NJ_T0097036.1 MGP_C57BL6NJ_G0036327.1 mouse_genomes_project X 72092903 72105239 + MGP_C57BL6NJ_P0097036 Opn1mw protein_coding protein_coding MGP_C57BL6NJ_T0097261.1 MGP_C57BL6NJ_G0036374.1 mouse_genomes_project X 76441262 76446690 - MGP_C57BL6NJ_P0097261 Gm14743 protein_coding protein_coding MGP_C57BL6NJ_T0005757.1 MGP_C57BL6NJ_G0004849.1 mouse_genomes_project X 93173025 93251072 + Gm14798 antisense antisense MGP_C57BL6NJ_T0016829.1 MGP_C57BL6NJ_G0014874.1 mouse_genomes_project X 57445831 57446662 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016766.1 MGP_C57BL6NJ_G0014811.1 mouse_genomes_project X 39659876 39660594 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017285.1 MGP_C57BL6NJ_G0015330.1 mouse_genomes_project X 146074942 146076308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019096.1 MGP_C57BL6NJ_G0016171.1 mouse_genomes_project X 49446064 49448209 - C430049B03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019097.1 MGP_C57BL6NJ_G0016171.1 mouse_genomes_project X 49446225 49448179 - C430049B03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019098.1 MGP_C57BL6NJ_G0016171.1 mouse_genomes_project X 49446788 49448207 - C430049B03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019099.1 MGP_C57BL6NJ_G0016171.1 mouse_genomes_project X 49447211 49448209 - C430049B03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017277.1 MGP_C57BL6NJ_G0015322.1 mouse_genomes_project X 144306691 144307154 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102352.1 MGP_C57BL6NJ_G0040299.1 mouse_genomes_project X 103395730 103396359 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102353.1 MGP_C57BL6NJ_G0040299.1 mouse_genomes_project X 103395834 103396230 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0017099.1 MGP_C57BL6NJ_G0015144.1 mouse_genomes_project X 105189324 105190165 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016916.1 MGP_C57BL6NJ_G0014961.1 mouse_genomes_project X 74138323 74139994 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098513.1 MGP_C57BL6NJ_G0036723.1 mouse_genomes_project X 164551250 164903529 - MGP_C57BL6NJ_P0098513 Nhs protein_coding protein_coding MGP_C57BL6NJ_T0098514.1 MGP_C57BL6NJ_G0036723.1 mouse_genomes_project X 164554769 164903187 - MGP_C57BL6NJ_P0098514 Nhs protein_coding protein_coding MGP_C57BL6NJ_T0017313.1 MGP_C57BL6NJ_G0015358.1 mouse_genomes_project X 153134970 153135355 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011464.1 MGP_C57BL6NJ_G0009549.1 mouse_genomes_project X 106214824 106214934 + Gm27428 miRNA miRNA MGP_C57BL6NJ_T0017038.1 MGP_C57BL6NJ_G0015083.1 mouse_genomes_project X 96481802 96483066 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096428.1 MGP_C57BL6NJ_G0036153.1 mouse_genomes_project X 33539947 33541793 - MGP_C57BL6NJ_P0096428 Rhox9 protein_coding protein_coding MGP_C57BL6NJ_T0017065.1 MGP_C57BL6NJ_G0015110.1 mouse_genomes_project X 102172247 102172841 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099199.1 MGP_C57BL6NJ_G0037263.1 mouse_genomes_project X 85087025 85087144 - n-R5s10 rRNA rRNA MGP_C57BL6NJ_T0103575.1 MGP_C57BL6NJ_G0041367.1 mouse_genomes_project X 42636667 42637438 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102096.1 MGP_C57BL6NJ_G0040142.1 mouse_genomes_project X 138539187 138539306 + Gm23679 snoRNA snoRNA MGP_C57BL6NJ_T0016954.1 MGP_C57BL6NJ_G0014999.1 mouse_genomes_project X 81084609 81085411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011430.1 MGP_C57BL6NJ_G0009515.1 mouse_genomes_project X 64231030 64231105 - Mir470 miRNA miRNA MGP_C57BL6NJ_T0096144.1 MGP_C57BL6NJ_G0036045.1 mouse_genomes_project X 3361035 3368954 + MGP_C57BL6NJ_P0096144 protein_coding protein_coding MGP_C57BL6NJ_T0096913.1 MGP_C57BL6NJ_G0036315.1 mouse_genomes_project X 71680242 71684763 + Srpk3 protein_coding retained_intron MGP_C57BL6NJ_T0096914.1 MGP_C57BL6NJ_G0036315.1 mouse_genomes_project X 71680242 71684763 + MGP_C57BL6NJ_P0096914 Srpk3 protein_coding protein_coding MGP_C57BL6NJ_T0096915.1 MGP_C57BL6NJ_G0036315.1 mouse_genomes_project X 71680243 71684772 + MGP_C57BL6NJ_P0096915 Srpk3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096916.1 MGP_C57BL6NJ_G0036315.1 mouse_genomes_project X 71683782 71684440 + Srpk3 protein_coding retained_intron MGP_C57BL6NJ_T0096917.1 MGP_C57BL6NJ_G0036315.1 mouse_genomes_project X 71683815 71684566 + Srpk3 protein_coding retained_intron MGP_C57BL6NJ_T0017207.1 MGP_C57BL6NJ_G0015252.1 mouse_genomes_project X 132727108 132729319 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017089.1 MGP_C57BL6NJ_G0015134.1 mouse_genomes_project X 103409061 103409369 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097341.1 MGP_C57BL6NJ_G0036405.1 mouse_genomes_project X 93111441 93118253 + MGP_C57BL6NJ_P0097341 AU015836 protein_coding protein_coding MGP_C57BL6NJ_T0097342.1 MGP_C57BL6NJ_G0036405.1 mouse_genomes_project X 93111456 93118253 + MGP_C57BL6NJ_P0097342 AU015836 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097343.1 MGP_C57BL6NJ_G0036405.1 mouse_genomes_project X 93111464 93112441 + MGP_C57BL6NJ_P0097343 AU015836 protein_coding protein_coding MGP_C57BL6NJ_T0097344.1 MGP_C57BL6NJ_G0036405.1 mouse_genomes_project X 93112424 93114446 + AU015836 protein_coding processed_transcript MGP_C57BL6NJ_T0097345.1 MGP_C57BL6NJ_G0036405.1 mouse_genomes_project X 93112578 93117854 + MGP_C57BL6NJ_P0097345 AU015836 protein_coding protein_coding MGP_C57BL6NJ_T0098346.1 MGP_C57BL6NJ_G0036677.1 mouse_genomes_project X 154376122 154381696 - Tspyl2 protein_coding retained_intron MGP_C57BL6NJ_T0098347.1 MGP_C57BL6NJ_G0036677.1 mouse_genomes_project X 154376122 154381696 - Tspyl2 protein_coding retained_intron MGP_C57BL6NJ_T0098348.1 MGP_C57BL6NJ_G0036677.1 mouse_genomes_project X 154376125 154381696 - MGP_C57BL6NJ_P0098348 Tspyl2 protein_coding protein_coding MGP_C57BL6NJ_T0098349.1 MGP_C57BL6NJ_G0036677.1 mouse_genomes_project X 154378571 154381115 - MGP_C57BL6NJ_P0098349 Tspyl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098350.1 MGP_C57BL6NJ_G0036677.1 mouse_genomes_project X 154379535 154381072 - Tspyl2 protein_coding retained_intron MGP_C57BL6NJ_T0098375.1 MGP_C57BL6NJ_G0036689.1 mouse_genomes_project X 155901355 155912555 - MGP_C57BL6NJ_P0098375 Kctd12b protein_coding protein_coding MGP_C57BL6NJ_T0098376.1 MGP_C57BL6NJ_G0036689.1 mouse_genomes_project X 155901355 155912444 - MGP_C57BL6NJ_P0098376 Kctd12b protein_coding protein_coding MGP_C57BL6NJ_T0097401.1 MGP_C57BL6NJ_G0036419.1 mouse_genomes_project X 94987505 95209743 + Zc3h12b protein_coding processed_transcript MGP_C57BL6NJ_T0097402.1 MGP_C57BL6NJ_G0036419.1 mouse_genomes_project X 95182645 95212955 + MGP_C57BL6NJ_P0097402 Zc3h12b protein_coding protein_coding MGP_C57BL6NJ_T0097403.1 MGP_C57BL6NJ_G0036419.1 mouse_genomes_project X 95183452 95217622 + MGP_C57BL6NJ_P0097403 Zc3h12b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096349.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18592536 18661000 - MGP_C57BL6NJ_P0096349 Klhl13 protein_coding protein_coding MGP_C57BL6NJ_T0096350.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18592544 18661902 - MGP_C57BL6NJ_P0096350 Klhl13 protein_coding protein_coding MGP_C57BL6NJ_T0096351.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18592545 18695461 - MGP_C57BL6NJ_P0096351 Klhl13 protein_coding protein_coding MGP_C57BL6NJ_T0096352.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18592545 18641918 - MGP_C57BL6NJ_P0096352 Klhl13 protein_coding protein_coding MGP_C57BL6NJ_T0096353.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18610590 18674048 - Klhl13 protein_coding processed_transcript MGP_C57BL6NJ_T0096354.1 MGP_C57BL6NJ_G0036117.1 mouse_genomes_project X 18623232 18747417 - Klhl13 protein_coding processed_transcript MGP_C57BL6NJ_T0096405.1 MGP_C57BL6NJ_G0036136.1 mouse_genomes_project X 32662018 32664901 - MGP_C57BL6NJ_P0096405 Rpl39 protein_coding protein_coding MGP_C57BL6NJ_T0096406.1 MGP_C57BL6NJ_G0036136.1 mouse_genomes_project X 32663141 32664665 - Rpl39 protein_coding retained_intron MGP_C57BL6NJ_T0096407.1 MGP_C57BL6NJ_G0036136.1 mouse_genomes_project X 32664035 32664655 - Rpl39 protein_coding retained_intron MGP_C57BL6NJ_T0100790.1 MGP_C57BL6NJ_G0038836.1 mouse_genomes_project X 72772740 72772847 - Gm22351 snRNA snRNA MGP_C57BL6NJ_T0097737.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107103078 107147304 + MGP_C57BL6NJ_P0097737 Gpr174 protein_coding protein_coding MGP_C57BL6NJ_T0097738.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107103115 107147899 + MGP_C57BL6NJ_P0097738 Gpr174 protein_coding protein_coding MGP_C57BL6NJ_T0097739.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107103172 107146439 + MGP_C57BL6NJ_P0097739 Gpr174 protein_coding protein_coding MGP_C57BL6NJ_T0097740.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107103494 107146451 + MGP_C57BL6NJ_P0097740 Gpr174 protein_coding protein_coding MGP_C57BL6NJ_T0097741.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107116833 107143454 + Gpr174 protein_coding processed_transcript MGP_C57BL6NJ_T0097742.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107135493 107143585 + Gpr174 protein_coding processed_transcript MGP_C57BL6NJ_T0097743.1 MGP_C57BL6NJ_G0036509.1 mouse_genomes_project X 107135493 107147901 + MGP_C57BL6NJ_P0097743 Gpr174 protein_coding protein_coding MGP_C57BL6NJ_T0017320.1 MGP_C57BL6NJ_G0015365.1 mouse_genomes_project X 154647381 154647907 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098212.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152282690 152326741 - MGP_C57BL6NJ_P0098212 Tmem29 protein_coding protein_coding MGP_C57BL6NJ_T0098213.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152282690 152347646 - MGP_C57BL6NJ_P0098213 Tmem29 protein_coding protein_coding MGP_C57BL6NJ_T0098214.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152283712 152347646 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098215.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152293806 152347650 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098216.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152293806 152326710 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098217.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152293812 152326509 - MGP_C57BL6NJ_P0098217 Tmem29 protein_coding protein_coding MGP_C57BL6NJ_T0098218.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152294148 152347650 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098219.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152294334 152321126 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098220.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152294399 152326509 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098221.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152302190 152347650 - Tmem29 protein_coding retained_intron MGP_C57BL6NJ_T0098222.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152322752 152326767 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0098223.1 MGP_C57BL6NJ_G0036659.1 mouse_genomes_project X 152323557 152326393 - Tmem29 protein_coding processed_transcript MGP_C57BL6NJ_T0009618.1 MGP_C57BL6NJ_G0007713.1 mouse_genomes_project X 145708348 145720916 + lincRNA lincRNA MGP_C57BL6NJ_T0096788.1 MGP_C57BL6NJ_G0036276.1 mouse_genomes_project X 67960061 67981480 - MGP_C57BL6NJ_P0096788 Ids protein_coding protein_coding MGP_C57BL6NJ_T0096789.1 MGP_C57BL6NJ_G0036276.1 mouse_genomes_project X 67967465 67977487 - MGP_C57BL6NJ_P0096789 Ids protein_coding protein_coding MGP_C57BL6NJ_T0095943.1 MGP_C57BL6NJ_G0036000.1 mouse_genomes_project X 665907 686594 + MGP_C57BL6NJ_P0095943 Nudt11 protein_coding protein_coding MGP_C57BL6NJ_T0016967.1 MGP_C57BL6NJ_G0015012.1 mouse_genomes_project X 84864480 84971301 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096843.1 MGP_C57BL6NJ_G0036290.1 mouse_genomes_project X 69721611 69741837 + MGP_C57BL6NJ_P0096843 Cnga2 protein_coding protein_coding MGP_C57BL6NJ_T0096844.1 MGP_C57BL6NJ_G0036290.1 mouse_genomes_project X 69721617 69733194 + Cnga2 protein_coding processed_transcript MGP_C57BL6NJ_T0097329.1 MGP_C57BL6NJ_G0036401.1 mouse_genomes_project X 92395523 92397461 + Arx protein_coding retained_intron MGP_C57BL6NJ_T0097330.1 MGP_C57BL6NJ_G0036401.1 mouse_genomes_project X 92395574 92407384 + MGP_C57BL6NJ_P0097330 Arx protein_coding protein_coding MGP_C57BL6NJ_T0097331.1 MGP_C57BL6NJ_G0036401.1 mouse_genomes_project X 92395588 92407089 + MGP_C57BL6NJ_P0097331 Arx protein_coding protein_coding MGP_C57BL6NJ_T0016984.1 MGP_C57BL6NJ_G0015029.1 mouse_genomes_project X 88215062 88215402 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096085.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2644265 2662254 - MGP_C57BL6NJ_P0096085 Hdac6 protein_coding protein_coding MGP_C57BL6NJ_T0096086.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2644267 2662254 - MGP_C57BL6NJ_P0096086 Hdac6 protein_coding protein_coding MGP_C57BL6NJ_T0096087.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2644269 2662203 - Hdac6 protein_coding retained_intron MGP_C57BL6NJ_T0096088.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2645504 2662254 - MGP_C57BL6NJ_P0096088 Hdac6 protein_coding protein_coding MGP_C57BL6NJ_T0096089.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2645700 2648631 - Hdac6 protein_coding retained_intron MGP_C57BL6NJ_T0096090.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2651738 2653089 - Hdac6 protein_coding retained_intron MGP_C57BL6NJ_T0096091.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2651845 2654381 - Hdac6 protein_coding retained_intron MGP_C57BL6NJ_T0096092.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2657755 2661524 - Hdac6 protein_coding retained_intron MGP_C57BL6NJ_T0096093.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2657779 2661918 - MGP_C57BL6NJ_P0096093 Hdac6 protein_coding protein_coding MGP_C57BL6NJ_T0096094.1 MGP_C57BL6NJ_G0036033.1 mouse_genomes_project X 2661350 2662132 - MGP_C57BL6NJ_P0096094 Hdac6 protein_coding protein_coding MGP_C57BL6NJ_T0096585.1 MGP_C57BL6NJ_G0036195.1 mouse_genomes_project X 44867242 44874856 - MGP_C57BL6NJ_P0096585 Gpr119 protein_coding protein_coding MGP_C57BL6NJ_T0098284.1 MGP_C57BL6NJ_G0036669.1 mouse_genomes_project X 153324273 153452604 + Fam120c protein_coding retained_intron MGP_C57BL6NJ_T0098285.1 MGP_C57BL6NJ_G0036669.1 mouse_genomes_project X 153324273 153452604 + MGP_C57BL6NJ_P0098285 Fam120c protein_coding protein_coding MGP_C57BL6NJ_T0097504.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100137461 100193117 + MGP_C57BL6NJ_P0097504 Dlg3 protein_coding protein_coding MGP_C57BL6NJ_T0097505.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100137462 100193119 + MGP_C57BL6NJ_P0097505 Dlg3 protein_coding protein_coding MGP_C57BL6NJ_T0097506.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100137488 100193119 + MGP_C57BL6NJ_P0097506 Dlg3 protein_coding protein_coding MGP_C57BL6NJ_T0097507.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100137734 100193121 + Dlg3 protein_coding retained_intron MGP_C57BL6NJ_T0097508.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100144480 100193119 + MGP_C57BL6NJ_P0097508 Dlg3 protein_coding protein_coding MGP_C57BL6NJ_T0097509.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100146916 100193119 + Dlg3 protein_coding processed_transcript MGP_C57BL6NJ_T0097510.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100170157 100181324 + Dlg3 protein_coding processed_transcript MGP_C57BL6NJ_T0097511.1 MGP_C57BL6NJ_G0036446.1 mouse_genomes_project X 100182710 100189541 + Dlg3 protein_coding processed_transcript MGP_C57BL6NJ_T0017153.1 MGP_C57BL6NJ_G0015198.1 mouse_genomes_project X 115657726 115658670 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096589.1 MGP_C57BL6NJ_G0036198.1 mouse_genomes_project X 45199216 45365072 - MGP_C57BL6NJ_P0096589 Enox2 protein_coding protein_coding MGP_C57BL6NJ_T0096590.1 MGP_C57BL6NJ_G0036198.1 mouse_genomes_project X 45255297 45487907 - Enox2 protein_coding processed_transcript MGP_C57BL6NJ_T0096591.1 MGP_C57BL6NJ_G0036198.1 mouse_genomes_project X 45258514 45487860 - Enox2 protein_coding processed_transcript MGP_C57BL6NJ_T0096592.1 MGP_C57BL6NJ_G0036198.1 mouse_genomes_project X 45262840 45487890 - Enox2 protein_coding processed_transcript MGP_C57BL6NJ_T0097892.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135454874 135509227 + MGP_C57BL6NJ_P0097892 Drp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097893.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135455123 135505340 + MGP_C57BL6NJ_P0097893 Drp2 protein_coding protein_coding MGP_C57BL6NJ_T0097894.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135455200 135509219 + MGP_C57BL6NJ_P0097894 Drp2 protein_coding protein_coding MGP_C57BL6NJ_T0097895.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135455220 135506262 + MGP_C57BL6NJ_P0097895 Drp2 protein_coding protein_coding MGP_C57BL6NJ_T0097896.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135455242 135505647 + MGP_C57BL6NJ_P0097896 Drp2 protein_coding protein_coding MGP_C57BL6NJ_T0097897.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135474925 135488037 + Drp2 protein_coding processed_transcript MGP_C57BL6NJ_T0097898.1 MGP_C57BL6NJ_G0036562.1 mouse_genomes_project X 135474979 135506040 + Drp2 protein_coding retained_intron MGP_C57BL6NJ_T0016963.1 MGP_C57BL6NJ_G0015008.1 mouse_genomes_project X 84382709 84383146 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017002.1 MGP_C57BL6NJ_G0015047.1 mouse_genomes_project X 91054689 91055351 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016685.1 MGP_C57BL6NJ_G0014730.1 mouse_genomes_project X 7945845 7946528 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096042.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493015 2530242 + MGP_C57BL6NJ_P0096042 Gripap1 protein_coding protein_coding MGP_C57BL6NJ_T0096043.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493244 2522158 + MGP_C57BL6NJ_P0096043 Gripap1 protein_coding protein_coding MGP_C57BL6NJ_T0096044.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493245 2530238 + MGP_C57BL6NJ_P0096044 Gripap1 protein_coding protein_coding MGP_C57BL6NJ_T0096045.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493256 2497795 + Gripap1 protein_coding retained_intron MGP_C57BL6NJ_T0096046.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493258 2530238 + MGP_C57BL6NJ_P0096046 Gripap1 protein_coding protein_coding MGP_C57BL6NJ_T0096047.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493262 2522158 + MGP_C57BL6NJ_P0096047 Gripap1 protein_coding protein_coding MGP_C57BL6NJ_T0096048.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2493268 2529631 + Gripap1 protein_coding processed_transcript MGP_C57BL6NJ_T0096049.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2501584 2519248 + Gripap1 protein_coding retained_intron MGP_C57BL6NJ_T0096050.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2518666 2519215 + Gripap1 protein_coding processed_transcript MGP_C57BL6NJ_T0096051.1 MGP_C57BL6NJ_G0036022.1 mouse_genomes_project X 2528593 2530238 + Gripap1 protein_coding retained_intron MGP_C57BL6NJ_T0019072.1 MGP_C57BL6NJ_G0016163.1 mouse_genomes_project X 2829489 2844277 + Gm6787 processed_transcript processed_transcript MGP_C57BL6NJ_T0096665.1 MGP_C57BL6NJ_G0036232.1 mouse_genomes_project X 53038792 53041900 + MGP_C57BL6NJ_P0096665 protein_coding protein_coding MGP_C57BL6NJ_T0096821.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69110272 69186879 - MGP_C57BL6NJ_P0096821 Cd99l2 protein_coding protein_coding MGP_C57BL6NJ_T0096822.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69110272 69186675 - MGP_C57BL6NJ_P0096822 Cd99l2 protein_coding protein_coding MGP_C57BL6NJ_T0096823.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69110272 69186879 - MGP_C57BL6NJ_P0096823 Cd99l2 protein_coding protein_coding MGP_C57BL6NJ_T0096824.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69112836 69186879 - MGP_C57BL6NJ_P0096824 Cd99l2 protein_coding protein_coding MGP_C57BL6NJ_T0096825.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69129513 69186679 - Cd99l2 protein_coding retained_intron MGP_C57BL6NJ_T0096826.1 MGP_C57BL6NJ_G0036283.1 mouse_genomes_project X 69185928 69186635 - Cd99l2 protein_coding processed_transcript MGP_C57BL6NJ_T0017047.1 MGP_C57BL6NJ_G0015092.1 mouse_genomes_project X 99170820 99172013 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098145.1 MGP_C57BL6NJ_G0036642.1 mouse_genomes_project X 144212529 144373675 + MGP_C57BL6NJ_P0098145 Tmem164 protein_coding protein_coding MGP_C57BL6NJ_T0098146.1 MGP_C57BL6NJ_G0036642.1 mouse_genomes_project X 144213893 144302097 + Tmem164 protein_coding retained_intron MGP_C57BL6NJ_T0098147.1 MGP_C57BL6NJ_G0036642.1 mouse_genomes_project X 144301799 144378789 + MGP_C57BL6NJ_P0098147 Tmem164 protein_coding protein_coding MGP_C57BL6NJ_T0017340.1 MGP_C57BL6NJ_G0015385.1 mouse_genomes_project X 159090949 159091418 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096084.1 MGP_C57BL6NJ_G0036032.1 mouse_genomes_project X 2638425 2642753 - MGP_C57BL6NJ_P0096084 Eras protein_coding protein_coding MGP_C57BL6NJ_T0019107.1 MGP_C57BL6NJ_G0016174.1 mouse_genomes_project X 71701052 71703454 + Gm14817 processed_transcript processed_transcript MGP_C57BL6NJ_T0016778.1 MGP_C57BL6NJ_G0014823.1 mouse_genomes_project X 43523132 43524098 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097909.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135657417 135659820 + MGP_C57BL6NJ_P0097909 Rpl36a protein_coding protein_coding MGP_C57BL6NJ_T0097910.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135657452 135659826 + Rpl36a protein_coding retained_intron MGP_C57BL6NJ_T0097911.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135657453 135659826 + MGP_C57BL6NJ_P0097911 Rpl36a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097912.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135657464 135659797 + Rpl36a protein_coding retained_intron MGP_C57BL6NJ_T0097913.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135657853 135658780 + Rpl36a protein_coding retained_intron MGP_C57BL6NJ_T0097914.1 MGP_C57BL6NJ_G0036567.1 mouse_genomes_project X 135658844 135659760 + Rpl36a protein_coding retained_intron MGP_C57BL6NJ_T0098574.1 MGP_C57BL6NJ_G0036740.1 mouse_genomes_project X 167109081 167207025 + MGP_C57BL6NJ_P0098574 Pir protein_coding protein_coding MGP_C57BL6NJ_T0098575.1 MGP_C57BL6NJ_G0036740.1 mouse_genomes_project X 167109141 167210924 + MGP_C57BL6NJ_P0098575 Pir protein_coding protein_coding MGP_C57BL6NJ_T0098576.1 MGP_C57BL6NJ_G0036740.1 mouse_genomes_project X 167109221 167111585 + Pir protein_coding retained_intron MGP_C57BL6NJ_T0098577.1 MGP_C57BL6NJ_G0036740.1 mouse_genomes_project X 167109257 167188539 + Pir protein_coding retained_intron MGP_C57BL6NJ_T0098578.1 MGP_C57BL6NJ_G0036740.1 mouse_genomes_project X 167109283 167149573 + Pir protein_coding processed_transcript MGP_C57BL6NJ_T0016645.1 MGP_C57BL6NJ_G0014690.1 mouse_genomes_project X 465278 467099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100767.1 MGP_C57BL6NJ_G0038813.1 mouse_genomes_project X 15898779 15898952 - Gm23628 snRNA snRNA MGP_C57BL6NJ_T0017119.1 MGP_C57BL6NJ_G0015164.1 mouse_genomes_project X 107941307 107946134 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017325.1 MGP_C57BL6NJ_G0015370.1 mouse_genomes_project X 155717712 155718097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100773.1 MGP_C57BL6NJ_G0038819.1 mouse_genomes_project X 32635981 32636090 - Gm26099 snRNA snRNA MGP_C57BL6NJ_T0017370.1 MGP_C57BL6NJ_G0015415.1 mouse_genomes_project X 164184272 164185191 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016908.1 MGP_C57BL6NJ_G0014953.1 mouse_genomes_project X 73115242 73116258 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096867.1 MGP_C57BL6NJ_G0036301.1 mouse_genomes_project X 70944514 70951682 + MGP_C57BL6NJ_P0096867 protein_coding protein_coding MGP_C57BL6NJ_T0100758.1 MGP_C57BL6NJ_G0038804.1 mouse_genomes_project X 4116952 4117110 + Gm25728 snRNA snRNA MGP_C57BL6NJ_T0011387.1 MGP_C57BL6NJ_G0009472.1 mouse_genomes_project X 16177074 16177131 - Mir5617 miRNA miRNA MGP_C57BL6NJ_T0016959.1 MGP_C57BL6NJ_G0015004.1 mouse_genomes_project X 83828093 83829208 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017101.1 MGP_C57BL6NJ_G0015146.1 mouse_genomes_project X 105396825 105397017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097553.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100817710 100834043 - MGP_C57BL6NJ_P0097553 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097554.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100817710 100834176 - MGP_C57BL6NJ_P0097554 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097555.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100817710 100833241 - MGP_C57BL6NJ_P0097555 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097556.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100817710 100833125 - MGP_C57BL6NJ_P0097556 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097557.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100819305 100823061 - Zmym3 protein_coding processed_transcript MGP_C57BL6NJ_T0097558.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100826570 100828246 - Zmym3 protein_coding retained_intron MGP_C57BL6NJ_T0097559.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100827527 100830804 - Zmym3 protein_coding processed_transcript MGP_C57BL6NJ_T0097560.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100827835 100828493 - Zmym3 protein_coding retained_intron MGP_C57BL6NJ_T0097561.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828255 100830703 - Zmym3 protein_coding retained_intron MGP_C57BL6NJ_T0097562.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828256 100833136 - MGP_C57BL6NJ_P0097562 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097563.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828259 100834012 - MGP_C57BL6NJ_P0097563 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097564.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828259 100833168 - MGP_C57BL6NJ_P0097564 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097565.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828264 100833543 - MGP_C57BL6NJ_P0097565 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097566.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828284 100833691 - MGP_C57BL6NJ_P0097566 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0097567.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100828341 100830700 - Zmym3 protein_coding retained_intron MGP_C57BL6NJ_T0097568.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100829513 100833156 - Zmym3 protein_coding processed_transcript MGP_C57BL6NJ_T0097569.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100829600 100831017 - Zmym3 protein_coding retained_intron MGP_C57BL6NJ_T0097570.1 MGP_C57BL6NJ_G0036457.1 mouse_genomes_project X 100829709 100833187 - MGP_C57BL6NJ_P0097570 Zmym3 protein_coding protein_coding MGP_C57BL6NJ_T0017381.1 MGP_C57BL6NJ_G0015426.1 mouse_genomes_project X 166278034 166279519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102092.1 MGP_C57BL6NJ_G0040138.1 mouse_genomes_project X 133433516 133433640 + Gm26406 snoRNA snoRNA MGP_C57BL6NJ_T0102069.1 MGP_C57BL6NJ_G0040115.1 mouse_genomes_project X 71714982 71715047 + Gm23615 snoRNA snoRNA MGP_C57BL6NJ_T0017017.1 MGP_C57BL6NJ_G0015062.1 mouse_genomes_project X 93745618 93746225 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097332.1 MGP_C57BL6NJ_G0036402.1 mouse_genomes_project X 92413777 92754936 - MGP_C57BL6NJ_P0097332 Pola1 protein_coding protein_coding MGP_C57BL6NJ_T0097333.1 MGP_C57BL6NJ_G0036402.1 mouse_genomes_project X 92588986 92599444 - Pola1 protein_coding processed_transcript MGP_C57BL6NJ_T0097334.1 MGP_C57BL6NJ_G0036402.1 mouse_genomes_project X 92741029 92754924 - Pola1 protein_coding retained_intron MGP_C57BL6NJ_T0011395.1 MGP_C57BL6NJ_G0009480.1 mouse_genomes_project X 44840734 44840853 + Gm27828 miRNA miRNA MGP_C57BL6NJ_T0096681.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53419398 53481829 + MGP_C57BL6NJ_P0096681 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096682.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53467933 53481831 + MGP_C57BL6NJ_P0096682 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096683.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53468219 53481831 + MGP_C57BL6NJ_P0096683 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096684.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53468315 53477696 + MGP_C57BL6NJ_P0096684 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096685.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53475023 53479157 + MGP_C57BL6NJ_P0096685 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096686.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53476215 53477746 + MGP_C57BL6NJ_P0096686 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0096687.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53476488 53478234 + Fhl1 protein_coding processed_transcript MGP_C57BL6NJ_T0096688.1 MGP_C57BL6NJ_G0036239.1 mouse_genomes_project X 53476505 53481842 + MGP_C57BL6NJ_P0096688 Fhl1 protein_coding protein_coding MGP_C57BL6NJ_T0098609.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169167952 169315891 + MGP_C57BL6NJ_P0098609 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098610.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169168013 169315891 + MGP_C57BL6NJ_P0098610 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098611.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169168013 169315891 + MGP_C57BL6NJ_P0098611 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098612.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098612 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098613.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169310903 + MGP_C57BL6NJ_P0098613 Gpm6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098614.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098614 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098615.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098615 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098616.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098616 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098617.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098617 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098618.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169315891 + MGP_C57BL6NJ_P0098618 Gpm6b protein_coding protein_coding MGP_C57BL6NJ_T0098619.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271593 169310903 + MGP_C57BL6NJ_P0098619 Gpm6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098620.1 MGP_C57BL6NJ_G0036750.1 mouse_genomes_project X 169271743 169300190 + Gpm6b protein_coding retained_intron MGP_C57BL6NJ_T0017096.1 MGP_C57BL6NJ_G0015141.1 mouse_genomes_project X 104824958 104825981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098569.1 MGP_C57BL6NJ_G0036738.1 mouse_genomes_project X 166970810 167020853 + MGP_C57BL6NJ_P0098569 Ace2 protein_coding protein_coding MGP_C57BL6NJ_T0098570.1 MGP_C57BL6NJ_G0036738.1 mouse_genomes_project X 166971956 167020853 + MGP_C57BL6NJ_P0098570 Ace2 protein_coding protein_coding MGP_C57BL6NJ_T0098571.1 MGP_C57BL6NJ_G0036738.1 mouse_genomes_project X 166994605 167018257 + MGP_C57BL6NJ_P0098571 Ace2 protein_coding protein_coding MGP_C57BL6NJ_T0017369.1 MGP_C57BL6NJ_G0015414.1 mouse_genomes_project X 163962864 163963468 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097397.1 MGP_C57BL6NJ_G0036417.1 mouse_genomes_project X 94734814 94743367 - MGP_C57BL6NJ_P0097397 Asb12 protein_coding protein_coding MGP_C57BL6NJ_T0102095.1 MGP_C57BL6NJ_G0040141.1 mouse_genomes_project X 138444679 138444794 - Gm25770 snoRNA snoRNA MGP_C57BL6NJ_T0016863.1 MGP_C57BL6NJ_G0014908.1 mouse_genomes_project X 63439361 63440443 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016709.1 MGP_C57BL6NJ_G0014754.1 mouse_genomes_project X 14609251 14609747 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016947.1 MGP_C57BL6NJ_G0014992.1 mouse_genomes_project X 78657774 78658459 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097255.1 MGP_C57BL6NJ_G0036370.1 mouse_genomes_project X 76025158 76039014 - MGP_C57BL6NJ_P0097255 Pbsn protein_coding protein_coding MGP_C57BL6NJ_T0097256.1 MGP_C57BL6NJ_G0036370.1 mouse_genomes_project X 76025159 76038921 - MGP_C57BL6NJ_P0097256 Pbsn protein_coding protein_coding MGP_C57BL6NJ_T0017241.1 MGP_C57BL6NJ_G0015286.1 mouse_genomes_project X 138491858 138492456 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017100.1 MGP_C57BL6NJ_G0015145.1 mouse_genomes_project X 105275098 105275336 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100833.1 MGP_C57BL6NJ_G0038879.1 mouse_genomes_project X 167107781 167107887 - Gm25367 snRNA snRNA MGP_C57BL6NJ_T0005781.1 MGP_C57BL6NJ_G0004866.1 mouse_genomes_project X 173064380 173069742 - antisense antisense MGP_C57BL6NJ_T0017059.1 MGP_C57BL6NJ_G0015104.1 mouse_genomes_project X 101253883 101254764 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017392.1 MGP_C57BL6NJ_G0015437.1 mouse_genomes_project X 169414624 169414839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016751.1 MGP_C57BL6NJ_G0014796.1 mouse_genomes_project X 36499802 36500362 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016910.1 MGP_C57BL6NJ_G0014955.1 mouse_genomes_project X 73269242 73270021 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096493.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37935482 37948903 + Xiap protein_coding processed_transcript MGP_C57BL6NJ_T0096494.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37943639 37985818 + MGP_C57BL6NJ_P0096494 Xiap protein_coding protein_coding MGP_C57BL6NJ_T0096495.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37943776 37980981 + Xiap protein_coding processed_transcript MGP_C57BL6NJ_T0096496.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37944251 37985818 + MGP_C57BL6NJ_P0096496 Xiap protein_coding protein_coding MGP_C57BL6NJ_T0096497.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37944263 37948903 + Xiap protein_coding processed_transcript MGP_C57BL6NJ_T0096498.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37944608 37985818 + Xiap protein_coding processed_transcript MGP_C57BL6NJ_T0096499.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37947590 37985818 + MGP_C57BL6NJ_P0096499 Xiap protein_coding protein_coding MGP_C57BL6NJ_T0096500.1 MGP_C57BL6NJ_G0036172.1 mouse_genomes_project X 37969894 37985818 + MGP_C57BL6NJ_P0096500 Xiap protein_coding protein_coding MGP_C57BL6NJ_T0017264.1 MGP_C57BL6NJ_G0015309.1 mouse_genomes_project X 143207557 143207857 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016695.1 MGP_C57BL6NJ_G0014740.1 mouse_genomes_project X 10472261 10472573 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098197.1 MGP_C57BL6NJ_G0036655.1 mouse_genomes_project X 148659155 148782262 + Htr2c protein_coding retained_intron MGP_C57BL6NJ_T0098198.1 MGP_C57BL6NJ_G0036655.1 mouse_genomes_project X 148659155 148689512 + Htr2c protein_coding retained_intron MGP_C57BL6NJ_T0098199.1 MGP_C57BL6NJ_G0036655.1 mouse_genomes_project X 148659272 148776728 + Htr2c protein_coding processed_transcript MGP_C57BL6NJ_T0098200.1 MGP_C57BL6NJ_G0036655.1 mouse_genomes_project X 148659364 148909288 + MGP_C57BL6NJ_P0098200 Htr2c protein_coding protein_coding MGP_C57BL6NJ_T0098201.1 MGP_C57BL6NJ_G0036655.1 mouse_genomes_project X 148659665 148892242 + MGP_C57BL6NJ_P0098201 Htr2c protein_coding protein_coding MGP_C57BL6NJ_T0017189.1 MGP_C57BL6NJ_G0015234.1 mouse_genomes_project X 126903763 126904426 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016994.1 MGP_C57BL6NJ_G0015039.1 mouse_genomes_project X 90257523 90258474 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017033.1 MGP_C57BL6NJ_G0015078.1 mouse_genomes_project X 95852427 95854135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096752.1 MGP_C57BL6NJ_G0036261.1 mouse_genomes_project X 59487163 59487985 + MGP_C57BL6NJ_P0096752 4931400O07Rik protein_coding protein_coding MGP_C57BL6NJ_T0009552.1 MGP_C57BL6NJ_G0007669.1 mouse_genomes_project X 5563335 5573736 - Gm10489 lincRNA lincRNA MGP_C57BL6NJ_T0016798.1 MGP_C57BL6NJ_G0014843.1 mouse_genomes_project X 49248461 49249859 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097411.1 MGP_C57BL6NJ_G0036421.1 mouse_genomes_project X 95392794 95469256 + MGP_C57BL6NJ_P0097411 Msn protein_coding protein_coding MGP_C57BL6NJ_T0097412.1 MGP_C57BL6NJ_G0036421.1 mouse_genomes_project X 95392809 95453610 + Msn protein_coding processed_transcript MGP_C57BL6NJ_T0097413.1 MGP_C57BL6NJ_G0036421.1 mouse_genomes_project X 95392849 95451530 + Msn protein_coding processed_transcript MGP_C57BL6NJ_T0095986.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2328613 2343300 + MGP_C57BL6NJ_P0095986 Syp protein_coding protein_coding MGP_C57BL6NJ_T0095987.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2328780 2337426 + Syp protein_coding retained_intron MGP_C57BL6NJ_T0095988.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2328864 2334351 + MGP_C57BL6NJ_P0095988 Syp protein_coding protein_coding MGP_C57BL6NJ_T0095989.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2329447 2334340 + Syp protein_coding processed_transcript MGP_C57BL6NJ_T0095990.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2329903 2334299 + Syp protein_coding retained_intron MGP_C57BL6NJ_T0095991.1 MGP_C57BL6NJ_G0036013.1 mouse_genomes_project X 2333965 2335090 + Syp protein_coding retained_intron MGP_C57BL6NJ_T0011397.1 MGP_C57BL6NJ_G0009482.1 mouse_genomes_project X 48713993 48714054 - Mir6384 miRNA miRNA MGP_C57BL6NJ_T0012022.1 MGP_C57BL6NJ_G0010107.1 mouse_genomes_project X 63851759 63852024 + Gm23028 misc_RNA misc_RNA MGP_C57BL6NJ_T0017078.1 MGP_C57BL6NJ_G0015123.1 mouse_genomes_project X 102944381 102944805 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016673.1 MGP_C57BL6NJ_G0014718.1 mouse_genomes_project X 5726354 5726911 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017210.1 MGP_C57BL6NJ_G0015255.1 mouse_genomes_project X 133868359 133869411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098381.1 MGP_C57BL6NJ_G0036691.1 mouse_genomes_project X 156044497 156045783 + MGP_C57BL6NJ_P0098381 Spin2c protein_coding protein_coding MGP_C57BL6NJ_T0098382.1 MGP_C57BL6NJ_G0036691.1 mouse_genomes_project X 156044513 156045796 + MGP_C57BL6NJ_P0098382 Spin2c protein_coding protein_coding MGP_C57BL6NJ_T0098383.1 MGP_C57BL6NJ_G0036691.1 mouse_genomes_project X 156044565 156046516 + MGP_C57BL6NJ_P0098383 Spin2c protein_coding protein_coding MGP_C57BL6NJ_T0016679.1 MGP_C57BL6NJ_G0014724.1 mouse_genomes_project X 6878780 6878979 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017039.1 MGP_C57BL6NJ_G0015084.1 mouse_genomes_project X 97140106 97140833 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102340.1 MGP_C57BL6NJ_G0040292.1 mouse_genomes_project X 16740956 16746125 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102341.1 MGP_C57BL6NJ_G0040292.1 mouse_genomes_project X 16741031 16743114 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0098624.1 MGP_C57BL6NJ_G0036753.1 mouse_genomes_project X 169385493 169408279 - MGP_C57BL6NJ_P0098624 Rab9 protein_coding protein_coding MGP_C57BL6NJ_T0098625.1 MGP_C57BL6NJ_G0036753.1 mouse_genomes_project X 169385990 169408058 - MGP_C57BL6NJ_P0098625 Rab9 protein_coding protein_coding MGP_C57BL6NJ_T0098626.1 MGP_C57BL6NJ_G0036753.1 mouse_genomes_project X 169386746 169403847 - MGP_C57BL6NJ_P0098626 Rab9 protein_coding protein_coding MGP_C57BL6NJ_T0097181.1 MGP_C57BL6NJ_G0036348.1 mouse_genomes_project X 72908528 72926275 + MGP_C57BL6NJ_P0097181 protein_coding protein_coding MGP_C57BL6NJ_T0097526.1 MGP_C57BL6NJ_G0036450.1 mouse_genomes_project X 100661115 100667433 + MGP_C57BL6NJ_P0097526 Foxo4 protein_coding protein_coding MGP_C57BL6NJ_T0097527.1 MGP_C57BL6NJ_G0036450.1 mouse_genomes_project X 100661154 100663023 + Foxo4 protein_coding processed_transcript MGP_C57BL6NJ_T0097528.1 MGP_C57BL6NJ_G0036450.1 mouse_genomes_project X 100661408 100665821 + MGP_C57BL6NJ_P0097528 Foxo4 protein_coding protein_coding MGP_C57BL6NJ_T0009634.1 MGP_C57BL6NJ_G0007722.1 mouse_genomes_project X 169608531 169638193 + Gm1720 lincRNA lincRNA MGP_C57BL6NJ_T0098136.1 MGP_C57BL6NJ_G0036638.1 mouse_genomes_project X 143590342 143717150 - MGP_C57BL6NJ_P0098136 Gucy2f protein_coding protein_coding MGP_C57BL6NJ_T0098137.1 MGP_C57BL6NJ_G0036638.1 mouse_genomes_project X 143594801 143710069 - MGP_C57BL6NJ_P0098137 Gucy2f protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096324.1 MGP_C57BL6NJ_G0036107.1 mouse_genomes_project X 16255736 16272950 - MGP_C57BL6NJ_P0096324 Elk1 protein_coding protein_coding MGP_C57BL6NJ_T0096325.1 MGP_C57BL6NJ_G0036107.1 mouse_genomes_project X 16262062 16272950 - Elk1 protein_coding retained_intron MGP_C57BL6NJ_T0017086.1 MGP_C57BL6NJ_G0015131.1 mouse_genomes_project X 103310083 103310402 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016847.1 MGP_C57BL6NJ_G0014892.1 mouse_genomes_project X 59260723 59261823 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017082.1 MGP_C57BL6NJ_G0015127.1 mouse_genomes_project X 103129475 103129904 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017382.1 MGP_C57BL6NJ_G0015427.1 mouse_genomes_project X 166593809 166594025 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097600.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101320400 101424799 + Nhsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0097601.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101320400 101553761 + MGP_C57BL6NJ_P0097601 Nhsl2 protein_coding protein_coding MGP_C57BL6NJ_T0097602.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101320400 101569505 + MGP_C57BL6NJ_P0097602 Nhsl2 protein_coding protein_coding MGP_C57BL6NJ_T0097603.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101436960 101555366 + Nhsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0097604.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101480997 101555341 + MGP_C57BL6NJ_P0097604 Nhsl2 protein_coding protein_coding MGP_C57BL6NJ_T0097605.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101528655 101549451 + Nhsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0097609.1 MGP_C57BL6NJ_G0036465.1 mouse_genomes_project X 101550426 101557785 + Nhsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0016949.1 MGP_C57BL6NJ_G0014994.1 mouse_genomes_project X 79263015 79263148 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102359.1 MGP_C57BL6NJ_G0040304.1 mouse_genomes_project X 138109289 138109611 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0103593.1 MGP_C57BL6NJ_G0041385.1 mouse_genomes_project X 85000004 85001037 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017129.1 MGP_C57BL6NJ_G0015174.1 mouse_genomes_project X 111770407 111770955 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096937.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71778209 71794329 - MGP_C57BL6NJ_P0096937 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0096938.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71778386 71805274 - MGP_C57BL6NJ_P0096938 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0096939.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71779095 71794228 - MGP_C57BL6NJ_P0096939 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0096940.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71779322 71780818 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096941.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71779428 71781186 - MGP_C57BL6NJ_P0096941 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0096942.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71780848 71782088 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096943.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71781102 71781838 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096944.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71781905 71783057 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096945.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71783496 71784579 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096946.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71783849 71785547 - MGP_C57BL6NJ_P0096946 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0096947.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71788136 71805235 - L1cam protein_coding retained_intron MGP_C57BL6NJ_T0096948.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71790109 71820542 - L1cam protein_coding processed_transcript MGP_C57BL6NJ_T0096949.1 MGP_C57BL6NJ_G0036319.1 mouse_genomes_project X 71790186 71794703 - MGP_C57BL6NJ_P0096949 L1cam protein_coding protein_coding MGP_C57BL6NJ_T0017251.1 MGP_C57BL6NJ_G0015296.1 mouse_genomes_project X 140891941 140892619 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017224.1 MGP_C57BL6NJ_G0015269.1 mouse_genomes_project X 137538971 137542957 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012027.1 MGP_C57BL6NJ_G0010112.1 mouse_genomes_project X 100126465 100126793 + Gm22160 misc_RNA misc_RNA MGP_C57BL6NJ_T0016929.1 MGP_C57BL6NJ_G0014974.1 mouse_genomes_project X 75468096 75468624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096541.1 MGP_C57BL6NJ_G0036184.1 mouse_genomes_project X 44185431 44196230 - MGP_C57BL6NJ_P0096541 Apln protein_coding protein_coding MGP_C57BL6NJ_T0017335.1 MGP_C57BL6NJ_G0015380.1 mouse_genomes_project X 157658511 157660062 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019152.1 MGP_C57BL6NJ_G0016188.1 mouse_genomes_project X 140766136 140889120 - Platr21 processed_transcript processed_transcript MGP_C57BL6NJ_T0019153.1 MGP_C57BL6NJ_G0016188.1 mouse_genomes_project X 140879840 140890088 - Platr21 processed_transcript processed_transcript MGP_C57BL6NJ_T0011418.1 MGP_C57BL6NJ_G0009503.1 mouse_genomes_project X 64192961 64193023 - Mir743 miRNA miRNA MGP_C57BL6NJ_T0096153.1 MGP_C57BL6NJ_G0036054.1 mouse_genomes_project X 4016852 4022825 - MGP_C57BL6NJ_P0096153 Gm14862 protein_coding protein_coding MGP_C57BL6NJ_T0097662.1 MGP_C57BL6NJ_G0036488.1 mouse_genomes_project X 104152393 104178947 + MGP_C57BL6NJ_P0097662 Uprt protein_coding protein_coding MGP_C57BL6NJ_T0017397.1 MGP_C57BL6NJ_G0015442.1 mouse_genomes_project X 171005998 171006718 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096140.1 MGP_C57BL6NJ_G0036044.1 mouse_genomes_project X 3036830 3038507 + MGP_C57BL6NJ_P0096140 Slc38a5 protein_coding protein_coding MGP_C57BL6NJ_T0096141.1 MGP_C57BL6NJ_G0036044.1 mouse_genomes_project X 3036848 3045753 + MGP_C57BL6NJ_P0096141 Slc38a5 protein_coding protein_coding MGP_C57BL6NJ_T0096142.1 MGP_C57BL6NJ_G0036044.1 mouse_genomes_project X 3037002 3045753 + MGP_C57BL6NJ_P0096142 Slc38a5 protein_coding protein_coding MGP_C57BL6NJ_T0096143.1 MGP_C57BL6NJ_G0036044.1 mouse_genomes_project X 3037256 3045748 + MGP_C57BL6NJ_P0096143 Slc38a5 protein_coding protein_coding MGP_C57BL6NJ_T0012045.1 MGP_C57BL6NJ_G0010130.1 mouse_genomes_project X 142242990 142243292 - Gm22025 misc_RNA misc_RNA MGP_C57BL6NJ_T0016877.1 MGP_C57BL6NJ_G0014922.1 mouse_genomes_project X 66157617 66159166 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016768.1 MGP_C57BL6NJ_G0014813.1 mouse_genomes_project X 40291875 40292323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016718.1 MGP_C57BL6NJ_G0014763.1 mouse_genomes_project X 15819120 15820447 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102342.1 MGP_C57BL6NJ_G0040293.1 mouse_genomes_project X 17845383 17846146 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102343.1 MGP_C57BL6NJ_G0040293.1 mouse_genomes_project X 17845480 17846089 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0017245.1 MGP_C57BL6NJ_G0015290.1 mouse_genomes_project X 139046244 139049679 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017218.1 MGP_C57BL6NJ_G0015263.1 mouse_genomes_project X 135808090 135810540 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005752.1 MGP_C57BL6NJ_G0004844.1 mouse_genomes_project X 73693085 73693784 + Gm15384 antisense antisense MGP_C57BL6NJ_T0098263.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152908543 152949084 - MGP_C57BL6NJ_P0098263 Gnl3l protein_coding protein_coding MGP_C57BL6NJ_T0098264.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152908543 152949084 - MGP_C57BL6NJ_P0098264 Gnl3l protein_coding protein_coding MGP_C57BL6NJ_T0098265.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152913338 152919439 - Gnl3l protein_coding retained_intron MGP_C57BL6NJ_T0098266.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152922359 152926146 - Gnl3l protein_coding retained_intron MGP_C57BL6NJ_T0098267.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152922729 152949084 - MGP_C57BL6NJ_P0098267 Gnl3l protein_coding protein_coding MGP_C57BL6NJ_T0098268.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152928576 152949084 - MGP_C57BL6NJ_P0098268 Gnl3l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098269.1 MGP_C57BL6NJ_G0036665.1 mouse_genomes_project X 152928620 152949084 - MGP_C57BL6NJ_P0098269 Gnl3l protein_coding protein_coding MGP_C57BL6NJ_T0017204.1 MGP_C57BL6NJ_G0015249.1 mouse_genomes_project X 131847360 131848754 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011481.1 MGP_C57BL6NJ_G0009566.1 mouse_genomes_project X 148713782 148713868 + Mir1264 miRNA miRNA MGP_C57BL6NJ_T0102361.1 MGP_C57BL6NJ_G0040306.1 mouse_genomes_project X 152088802 152095804 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102362.1 MGP_C57BL6NJ_G0040306.1 mouse_genomes_project X 152092148 152093118 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0016686.1 MGP_C57BL6NJ_G0014731.1 mouse_genomes_project X 7970760 7972017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096382.1 MGP_C57BL6NJ_G0036128.1 mouse_genomes_project X 32158115 32175716 - MGP_C57BL6NJ_P0096382 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096383.1 MGP_C57BL6NJ_G0036128.1 mouse_genomes_project X 32159021 32192225 - MGP_C57BL6NJ_P0096383 protein_coding protein_coding MGP_C57BL6NJ_T0096386.1 MGP_C57BL6NJ_G0036130.1 mouse_genomes_project X 32342417 32347027 + MGP_C57BL6NJ_P0096386 Slc25a5 protein_coding protein_coding MGP_C57BL6NJ_T0096387.1 MGP_C57BL6NJ_G0036130.1 mouse_genomes_project X 32342420 32344462 + Slc25a5 protein_coding retained_intron MGP_C57BL6NJ_T0096388.1 MGP_C57BL6NJ_G0036130.1 mouse_genomes_project X 32344097 32345383 + Slc25a5 protein_coding retained_intron MGP_C57BL6NJ_T0009587.1 MGP_C57BL6NJ_G0007695.1 mouse_genomes_project X 95007916 95008596 - 1700010D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0102586.1 MGP_C57BL6NJ_G0040408.1 mouse_genomes_project X 152737969 152771784 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102587.1 MGP_C57BL6NJ_G0040408.1 mouse_genomes_project X 152764764 152766988 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102588.1 MGP_C57BL6NJ_G0040408.1 mouse_genomes_project X 152768377 152771897 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0017181.1 MGP_C57BL6NJ_G0015226.1 mouse_genomes_project X 122274040 122276952 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005735.1 MGP_C57BL6NJ_G0004829.1 mouse_genomes_project X 5573966 5575204 - Gm14493 antisense antisense MGP_C57BL6NJ_T0016668.1 MGP_C57BL6NJ_G0014713.1 mouse_genomes_project X 4126923 4127237 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017050.1 MGP_C57BL6NJ_G0015095.1 mouse_genomes_project X 99697003 99698158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016761.1 MGP_C57BL6NJ_G0014806.1 mouse_genomes_project X 38224498 38224666 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016834.1 MGP_C57BL6NJ_G0014879.1 mouse_genomes_project X 57718564 57719139 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017221.1 MGP_C57BL6NJ_G0015266.1 mouse_genomes_project X 136357052 136357798 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016649.1 MGP_C57BL6NJ_G0014694.1 mouse_genomes_project X 2201412 2201826 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103582.1 MGP_C57BL6NJ_G0041374.1 mouse_genomes_project X 72828722 72829589 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009592.1 MGP_C57BL6NJ_G0007700.1 mouse_genomes_project X 103072505 103078761 - Xist lincRNA lincRNA MGP_C57BL6NJ_T0009593.1 MGP_C57BL6NJ_G0007700.1 mouse_genomes_project X 103072600 103094731 - Xist lincRNA lincRNA MGP_C57BL6NJ_T0009594.1 MGP_C57BL6NJ_G0007700.1 mouse_genomes_project X 103080907 103081859 - Xist lincRNA lincRNA MGP_C57BL6NJ_T0017390.1 MGP_C57BL6NJ_G0015435.1 mouse_genomes_project X 169414011 169414837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017240.1 MGP_C57BL6NJ_G0015285.1 mouse_genomes_project X 138454968 138455802 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016792.1 MGP_C57BL6NJ_G0014837.1 mouse_genomes_project X 47492025 47493142 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097452.1 MGP_C57BL6NJ_G0036431.1 mouse_genomes_project X 98340796 98402887 + MGP_C57BL6NJ_P0097452 Stard8 protein_coding protein_coding MGP_C57BL6NJ_T0097453.1 MGP_C57BL6NJ_G0036431.1 mouse_genomes_project X 98381254 98403038 + Stard8 protein_coding processed_transcript MGP_C57BL6NJ_T0097454.1 MGP_C57BL6NJ_G0036431.1 mouse_genomes_project X 98397942 98411947 + MGP_C57BL6NJ_P0097454 Stard8 protein_coding protein_coding MGP_C57BL6NJ_T0097455.1 MGP_C57BL6NJ_G0036431.1 mouse_genomes_project X 98405822 98407659 + Stard8 protein_coding processed_transcript MGP_C57BL6NJ_T0017384.1 MGP_C57BL6NJ_G0015429.1 mouse_genomes_project X 167743522 167743799 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098076.1 MGP_C57BL6NJ_G0036621.1 mouse_genomes_project X 141351625 141362182 + MGP_C57BL6NJ_P0098076 Cldn2 protein_coding protein_coding MGP_C57BL6NJ_T0098077.1 MGP_C57BL6NJ_G0036621.1 mouse_genomes_project X 141353582 141359509 + MGP_C57BL6NJ_P0098077 Cldn2 protein_coding protein_coding MGP_C57BL6NJ_T0098078.1 MGP_C57BL6NJ_G0036621.1 mouse_genomes_project X 141356876 141359897 + MGP_C57BL6NJ_P0098078 Cldn2 protein_coding protein_coding MGP_C57BL6NJ_T0017399.1 MGP_C57BL6NJ_G0015444.1 mouse_genomes_project X 171405809 171406204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097532.1 MGP_C57BL6NJ_G0036453.1 mouse_genomes_project X 100670937 100675268 - MGP_C57BL6NJ_P0097532 Il2rg protein_coding protein_coding MGP_C57BL6NJ_T0097533.1 MGP_C57BL6NJ_G0036453.1 mouse_genomes_project X 100671497 100674447 - MGP_C57BL6NJ_P0097533 Il2rg protein_coding protein_coding MGP_C57BL6NJ_T0097534.1 MGP_C57BL6NJ_G0036453.1 mouse_genomes_project X 100673678 100675203 - Il2rg protein_coding retained_intron MGP_C57BL6NJ_T0097535.1 MGP_C57BL6NJ_G0036453.1 mouse_genomes_project X 100674208 100675171 - Il2rg protein_coding processed_transcript MGP_C57BL6NJ_T0017378.1 MGP_C57BL6NJ_G0015423.1 mouse_genomes_project X 165987936 165988457 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096906.1 MGP_C57BL6NJ_G0036313.1 mouse_genomes_project X 71621491 71643296 + MGP_C57BL6NJ_P0096906 Abcd1 protein_coding protein_coding MGP_C57BL6NJ_T0096907.1 MGP_C57BL6NJ_G0036313.1 mouse_genomes_project X 71621634 71636327 + MGP_C57BL6NJ_P0096907 Abcd1 protein_coding protein_coding MGP_C57BL6NJ_T0016764.1 MGP_C57BL6NJ_G0014809.1 mouse_genomes_project X 39403268 39403440 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096236.1 MGP_C57BL6NJ_G0036076.1 mouse_genomes_project X 9300812 9301333 + MGP_C57BL6NJ_P0096236 Gm14482 protein_coding protein_coding MGP_C57BL6NJ_T0017021.1 MGP_C57BL6NJ_G0015066.1 mouse_genomes_project X 93877153 93878771 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098654.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 171848107 172365361 + MGP_C57BL6NJ_P0098654 Arhgap6 protein_coding protein_coding MGP_C57BL6NJ_T0098655.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172093812 172319064 + Arhgap6 protein_coding retained_intron MGP_C57BL6NJ_T0098656.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172093812 172365361 + MGP_C57BL6NJ_P0098656 Arhgap6 protein_coding protein_coding MGP_C57BL6NJ_T0098657.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172093812 172326529 + MGP_C57BL6NJ_P0098657 Arhgap6 protein_coding protein_coding MGP_C57BL6NJ_T0098658.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172093812 172321610 + MGP_C57BL6NJ_P0098658 Arhgap6 protein_coding protein_coding MGP_C57BL6NJ_T0098659.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172093812 172365361 + MGP_C57BL6NJ_P0098659 Arhgap6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098660.1 MGP_C57BL6NJ_G0036762.1 mouse_genomes_project X 172176408 172365361 + MGP_C57BL6NJ_P0098660 Arhgap6 protein_coding protein_coding MGP_C57BL6NJ_T0096661.1 MGP_C57BL6NJ_G0036229.1 mouse_genomes_project X 50230726 50233073 - MGP_C57BL6NJ_P0096661 Zfp36l3 protein_coding protein_coding MGP_C57BL6NJ_T0017309.1 MGP_C57BL6NJ_G0015354.1 mouse_genomes_project X 152590314 152591006 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103602.1 MGP_C57BL6NJ_G0041394.1 mouse_genomes_project X 102225059 102291668 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012023.1 MGP_C57BL6NJ_G0010108.1 mouse_genomes_project X 66208460 66208516 + Gm27979 misc_RNA misc_RNA MGP_C57BL6NJ_T0017163.1 MGP_C57BL6NJ_G0015208.1 mouse_genomes_project X 117913469 117915500 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016836.1 MGP_C57BL6NJ_G0014881.1 mouse_genomes_project X 57878070 57878795 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098202.1 MGP_C57BL6NJ_G0036656.1 mouse_genomes_project X 149089983 149138259 - MGP_C57BL6NJ_P0098202 Il13ra2 protein_coding protein_coding MGP_C57BL6NJ_T0098203.1 MGP_C57BL6NJ_G0036656.1 mouse_genomes_project X 149089985 149110328 - MGP_C57BL6NJ_P0098203 Il13ra2 protein_coding protein_coding MGP_C57BL6NJ_T0017383.1 MGP_C57BL6NJ_G0015428.1 mouse_genomes_project X 167306649 167321588 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016884.1 MGP_C57BL6NJ_G0014929.1 mouse_genomes_project X 68134194 68135404 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017376.1 MGP_C57BL6NJ_G0015421.1 mouse_genomes_project X 165610670 165611112 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016988.1 MGP_C57BL6NJ_G0015033.1 mouse_genomes_project X 88711780 88712030 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011479.1 MGP_C57BL6NJ_G0009564.1 mouse_genomes_project X 148705231 148705339 + Mir764 miRNA miRNA MGP_C57BL6NJ_T0017023.1 MGP_C57BL6NJ_G0015068.1 mouse_genomes_project X 94002997 94003697 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016738.1 MGP_C57BL6NJ_G0014783.1 mouse_genomes_project X 32398342 32398499 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103580.1 MGP_C57BL6NJ_G0041372.1 mouse_genomes_project X 68011503 68028493 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097626.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097626 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097627.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097627 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097628.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097628 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097629.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097629 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097630.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097630 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097631.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102031542 102157804 - MGP_C57BL6NJ_P0097631 Phka1 protein_coding protein_coding MGP_C57BL6NJ_T0097632.1 MGP_C57BL6NJ_G0036472.1 mouse_genomes_project X 102071008 102157804 - Phka1 protein_coding retained_intron MGP_C57BL6NJ_T0019082.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46750011 46884890 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019083.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46750011 46759459 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019084.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46750018 46757447 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019085.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46752713 46768095 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019086.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46752922 46755604 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019087.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46754235 46802692 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019088.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46757700 46884695 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019089.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46846805 46884940 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019090.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46846867 46884932 - processed_transcript processed_transcript MGP_C57BL6NJ_T0019091.1 MGP_C57BL6NJ_G0016169.1 mouse_genomes_project X 46865961 46884950 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017315.1 MGP_C57BL6NJ_G0015360.1 mouse_genomes_project X 153646817 153647732 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096997.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71872930 71896493 - MGP_C57BL6NJ_P0096997 Hcfc1 protein_coding protein_coding MGP_C57BL6NJ_T0096998.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71872933 71879391 - MGP_C57BL6NJ_P0096998 Hcfc1 protein_coding protein_coding MGP_C57BL6NJ_T0096999.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71872935 71896487 - MGP_C57BL6NJ_P0096999 Hcfc1 protein_coding protein_coding MGP_C57BL6NJ_T0097000.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71875459 71877571 - Hcfc1 protein_coding retained_intron MGP_C57BL6NJ_T0097001.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71877333 71878485 - Hcfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0097002.1 MGP_C57BL6NJ_G0036324.1 mouse_genomes_project X 71885258 71887567 - Hcfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0096858.1 MGP_C57BL6NJ_G0036297.1 mouse_genomes_project X 70703209 70731121 + MGP_C57BL6NJ_P0096858 Nsdhl protein_coding protein_coding MGP_C57BL6NJ_T0096859.1 MGP_C57BL6NJ_G0036297.1 mouse_genomes_project X 70715440 70726263 + Nsdhl protein_coding retained_intron MGP_C57BL6NJ_T0017252.1 MGP_C57BL6NJ_G0015297.1 mouse_genomes_project X 141223783 141224959 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102105.1 MGP_C57BL6NJ_G0040151.1 mouse_genomes_project X 159753836 159753968 - Gm25795 snoRNA snoRNA MGP_C57BL6NJ_T0016653.1 MGP_C57BL6NJ_G0014698.1 mouse_genomes_project X 2453212 2453497 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016664.1 MGP_C57BL6NJ_G0014709.1 mouse_genomes_project X 3688019 3689082 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096440.1 MGP_C57BL6NJ_G0036161.1 mouse_genomes_project X 33871131 33878908 + MGP_C57BL6NJ_P0096440 Zbtb33 protein_coding protein_coding MGP_C57BL6NJ_T0096441.1 MGP_C57BL6NJ_G0036161.1 mouse_genomes_project X 33871150 33876021 + MGP_C57BL6NJ_P0096441 Zbtb33 protein_coding protein_coding MGP_C57BL6NJ_T0096442.1 MGP_C57BL6NJ_G0036161.1 mouse_genomes_project X 33871172 33875405 + MGP_C57BL6NJ_P0096442 Zbtb33 protein_coding protein_coding MGP_C57BL6NJ_T0102335.1 MGP_C57BL6NJ_G0040289.1 mouse_genomes_project X 2842869 2843689 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0096242.1 MGP_C57BL6NJ_G0036082.1 mouse_genomes_project X 11658216 11659037 + MGP_C57BL6NJ_P0096242 Cypt1 protein_coding protein_coding MGP_C57BL6NJ_T0096243.1 MGP_C57BL6NJ_G0036082.1 mouse_genomes_project X 11658219 11659036 + MGP_C57BL6NJ_P0096243 Cypt1 protein_coding protein_coding MGP_C57BL6NJ_T0017238.1 MGP_C57BL6NJ_G0015283.1 mouse_genomes_project X 138254886 138256008 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096255.1 MGP_C57BL6NJ_G0036089.1 mouse_genomes_project X 13341547 13342392 + MGP_C57BL6NJ_P0096255 Dusp21 protein_coding protein_coding MGP_C57BL6NJ_T0011468.1 MGP_C57BL6NJ_G0009553.1 mouse_genomes_project X 135087558 135087640 + Mir3112 miRNA miRNA MGP_C57BL6NJ_T0019081.1 MGP_C57BL6NJ_G0016168.1 mouse_genomes_project X 35675552 36321816 + processed_transcript processed_transcript MGP_C57BL6NJ_T0016825.1 MGP_C57BL6NJ_G0014870.1 mouse_genomes_project X 56002661 56003337 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100819.1 MGP_C57BL6NJ_G0038865.1 mouse_genomes_project X 139890927 139891032 - Gm23958 snRNA snRNA MGP_C57BL6NJ_T0097823.1 MGP_C57BL6NJ_G0036539.1 mouse_genomes_project X 116817252 116817600 + MGP_C57BL6NJ_P0097823 H2afb2 protein_coding protein_coding MGP_C57BL6NJ_T0096118.1 MGP_C57BL6NJ_G0036040.1 mouse_genomes_project X 2896217 2919830 - MGP_C57BL6NJ_P0096118 Tbc1d25 protein_coding protein_coding MGP_C57BL6NJ_T0096119.1 MGP_C57BL6NJ_G0036040.1 mouse_genomes_project X 2896217 2919830 - MGP_C57BL6NJ_P0096119 Tbc1d25 protein_coding protein_coding MGP_C57BL6NJ_T0096120.1 MGP_C57BL6NJ_G0036040.1 mouse_genomes_project X 2896228 2919607 - Tbc1d25 protein_coding retained_intron MGP_C57BL6NJ_T0096121.1 MGP_C57BL6NJ_G0036040.1 mouse_genomes_project X 2896450 2919515 - MGP_C57BL6NJ_P0096121 Tbc1d25 protein_coding protein_coding MGP_C57BL6NJ_T0017067.1 MGP_C57BL6NJ_G0015112.1 mouse_genomes_project X 102536764 102537012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096548.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44336513 44375464 - MGP_C57BL6NJ_P0096548 Zdhhc9 protein_coding protein_coding MGP_C57BL6NJ_T0096549.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44336513 44375273 - MGP_C57BL6NJ_P0096549 Zdhhc9 protein_coding protein_coding MGP_C57BL6NJ_T0096550.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44345930 44375251 - Zdhhc9 protein_coding retained_intron MGP_C57BL6NJ_T0096551.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44356631 44375188 - Zdhhc9 protein_coding retained_intron MGP_C57BL6NJ_T0096552.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44368315 44374914 - Zdhhc9 protein_coding processed_transcript MGP_C57BL6NJ_T0096553.1 MGP_C57BL6NJ_G0036187.1 mouse_genomes_project X 44373253 44375244 - Zdhhc9 protein_coding processed_transcript MGP_C57BL6NJ_T0016743.1 MGP_C57BL6NJ_G0014788.1 mouse_genomes_project X 34885780 34886036 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097976.1 MGP_C57BL6NJ_G0036584.1 mouse_genomes_project X 137259101 137260698 - MGP_C57BL6NJ_P0097976 Bex2 protein_coding protein_coding MGP_C57BL6NJ_T0099204.1 MGP_C57BL6NJ_G0037268.1 mouse_genomes_project X 157909171 157909290 + n-R5s16 rRNA rRNA MGP_C57BL6NJ_T0097808.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113287759 113860605 + MGP_C57BL6NJ_P0097808 Dach2 protein_coding protein_coding MGP_C57BL6NJ_T0097809.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113287771 113856126 + MGP_C57BL6NJ_P0097809 Dach2 protein_coding protein_coding MGP_C57BL6NJ_T0097810.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113287825 113859797 + MGP_C57BL6NJ_P0097810 Dach2 protein_coding protein_coding MGP_C57BL6NJ_T0097811.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113288501 113777151 + Dach2 protein_coding retained_intron MGP_C57BL6NJ_T0097812.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113288506 113860112 + MGP_C57BL6NJ_P0097812 Dach2 protein_coding protein_coding MGP_C57BL6NJ_T0097813.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113288506 113858475 + MGP_C57BL6NJ_P0097813 Dach2 protein_coding protein_coding MGP_C57BL6NJ_T0097814.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113288883 113560347 + Dach2 protein_coding processed_transcript MGP_C57BL6NJ_T0097815.1 MGP_C57BL6NJ_G0036533.1 mouse_genomes_project X 113744841 113858475 + Dach2 protein_coding processed_transcript MGP_C57BL6NJ_T0099209.1 MGP_C57BL6NJ_G0037273.1 mouse_genomes_project X 170912833 170912943 + Gm24772 rRNA rRNA MGP_C57BL6NJ_T0097616.1 MGP_C57BL6NJ_G0036470.1 mouse_genomes_project X 101767335 101772613 - MGP_C57BL6NJ_P0097616 Cited1 protein_coding protein_coding MGP_C57BL6NJ_T0097617.1 MGP_C57BL6NJ_G0036470.1 mouse_genomes_project X 101767358 101772284 - MGP_C57BL6NJ_P0097617 Cited1 protein_coding protein_coding MGP_C57BL6NJ_T0097618.1 MGP_C57BL6NJ_G0036470.1 mouse_genomes_project X 101767668 101771378 - MGP_C57BL6NJ_P0097618 Cited1 protein_coding protein_coding MGP_C57BL6NJ_T0097619.1 MGP_C57BL6NJ_G0036470.1 mouse_genomes_project X 101767775 101771207 - MGP_C57BL6NJ_P0097619 Cited1 protein_coding protein_coding MGP_C57BL6NJ_T0097620.1 MGP_C57BL6NJ_G0036470.1 mouse_genomes_project X 101767840 101772350 - MGP_C57BL6NJ_P0097620 Cited1 protein_coding protein_coding MGP_C57BL6NJ_T0097669.1 MGP_C57BL6NJ_G0036493.1 mouse_genomes_project X 105208633 105209501 + MGP_C57BL6NJ_P0097669 Cypt2 protein_coding protein_coding MGP_C57BL6NJ_T0100784.1 MGP_C57BL6NJ_G0038830.1 mouse_genomes_project X 55111641 55111748 - Gm25851 snRNA snRNA MGP_C57BL6NJ_T0016923.1 MGP_C57BL6NJ_G0014968.1 mouse_genomes_project X 74575045 74575349 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096600.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 45987267 45992975 - MGP_C57BL6NJ_P0096600 protein_coding protein_coding MGP_C57BL6NJ_T0096601.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 45987267 46006693 - MGP_C57BL6NJ_P0096601 protein_coding protein_coding MGP_C57BL6NJ_T0096602.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 45987276 46006816 - MGP_C57BL6NJ_P0096602 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096603.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 45991078 46004308 - MGP_C57BL6NJ_P0096603 protein_coding protein_coding MGP_C57BL6NJ_T0096604.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 46000259 46006693 - MGP_C57BL6NJ_P0096604 protein_coding protein_coding MGP_C57BL6NJ_T0096605.1 MGP_C57BL6NJ_G0036202.1 mouse_genomes_project X 46003888 46006679 - protein_coding processed_transcript MGP_C57BL6NJ_T0099232.1 MGP_C57BL6NJ_G0037296.1 mouse_genomes_project X 155020369 155020610 + Gm24687 ribozyme ribozyme MGP_C57BL6NJ_T0002621.1 MGP_C57BL6NJ_G0002508.1 mouse_genomes_project X 103195151 103199827 - TEC TEC MGP_C57BL6NJ_T0096151.1 MGP_C57BL6NJ_G0036052.1 mouse_genomes_project X 3856958 3858739 + MGP_C57BL6NJ_P0096151 4930402K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0016661.1 MGP_C57BL6NJ_G0014706.1 mouse_genomes_project X 3651623 3653120 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016698.1 MGP_C57BL6NJ_G0014743.1 mouse_genomes_project X 11422588 11422975 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096737.1 MGP_C57BL6NJ_G0036253.1 mouse_genomes_project X 56830645 56871124 + MGP_C57BL6NJ_P0096737 F9 protein_coding protein_coding MGP_C57BL6NJ_T0011424.1 MGP_C57BL6NJ_G0009509.1 mouse_genomes_project X 64213251 64213322 - Mir741 miRNA miRNA MGP_C57BL6NJ_T0096244.1 MGP_C57BL6NJ_G0036083.1 mouse_genomes_project X 11754547 11757224 + MGP_C57BL6NJ_P0096244 protein_coding protein_coding MGP_C57BL6NJ_T0102080.1 MGP_C57BL6NJ_G0040126.1 mouse_genomes_project X 93637655 93637765 - Gm24595 snoRNA snoRNA MGP_C57BL6NJ_T0017232.1 MGP_C57BL6NJ_G0015277.1 mouse_genomes_project X 137679211 137679656 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096239.1 MGP_C57BL6NJ_G0036079.1 mouse_genomes_project X 9300824 9301331 + MGP_C57BL6NJ_P0096239 Gm14474 protein_coding protein_coding MGP_C57BL6NJ_T0097663.1 MGP_C57BL6NJ_G0036489.1 mouse_genomes_project X 104207299 104339326 - MGP_C57BL6NJ_P0097663 Zdhhc15 protein_coding protein_coding MGP_C57BL6NJ_T0098191.1 MGP_C57BL6NJ_G0036653.1 mouse_genomes_project X 146877322 146940979 - MGP_C57BL6NJ_P0098191 Lhfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0098192.1 MGP_C57BL6NJ_G0036653.1 mouse_genomes_project X 146933049 146941118 - MGP_C57BL6NJ_P0098192 Lhfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0097456.1 MGP_C57BL6NJ_G0036432.1 mouse_genomes_project X 98477266 98492183 + MGP_C57BL6NJ_P0097456 Efnb1 protein_coding protein_coding MGP_C57BL6NJ_T0097457.1 MGP_C57BL6NJ_G0036432.1 mouse_genomes_project X 98481338 98490422 + Efnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0016827.1 MGP_C57BL6NJ_G0014872.1 mouse_genomes_project X 56884845 56886047 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016727.1 MGP_C57BL6NJ_G0014772.1 mouse_genomes_project X 17720535 17721010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017118.1 MGP_C57BL6NJ_G0015163.1 mouse_genomes_project X 107267152 107267467 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017170.1 MGP_C57BL6NJ_G0015215.1 mouse_genomes_project X 118968415 118969524 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017143.1 MGP_C57BL6NJ_G0015188.1 mouse_genomes_project X 114061199 114062768 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099192.1 MGP_C57BL6NJ_G0037256.1 mouse_genomes_project X 13532986 13533105 - n-R5s5 rRNA rRNA MGP_C57BL6NJ_T0097238.1 MGP_C57BL6NJ_G0036361.1 mouse_genomes_project X 73711656 73717842 - MGP_C57BL6NJ_P0097238 Rab39b protein_coding protein_coding MGP_C57BL6NJ_T0017093.1 MGP_C57BL6NJ_G0015138.1 mouse_genomes_project X 104047156 104047621 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011467.1 MGP_C57BL6NJ_G0009552.1 mouse_genomes_project X 131712749 131712859 - Gm26209 miRNA miRNA MGP_C57BL6NJ_T0100774.1 MGP_C57BL6NJ_G0038820.1 mouse_genomes_project X 35084968 35085073 - Gm26437 snRNA snRNA MGP_C57BL6NJ_T0017196.1 MGP_C57BL6NJ_G0015241.1 mouse_genomes_project X 128988016 128988680 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012030.1 MGP_C57BL6NJ_G0010115.1 mouse_genomes_project X 103092459 103092540 + Gm27520 misc_RNA misc_RNA MGP_C57BL6NJ_T0011449.1 MGP_C57BL6NJ_G0009534.1 mouse_genomes_project X 84180845 84180928 + Gm44378 miRNA miRNA MGP_C57BL6NJ_T0098150.1 MGP_C57BL6NJ_G0036645.1 mouse_genomes_project X 144788226 144894196 - MGP_C57BL6NJ_P0098150 Chrdl1 protein_coding protein_coding MGP_C57BL6NJ_T0098151.1 MGP_C57BL6NJ_G0036645.1 mouse_genomes_project X 144788236 144898475 - MGP_C57BL6NJ_P0098151 Chrdl1 protein_coding protein_coding MGP_C57BL6NJ_T0098152.1 MGP_C57BL6NJ_G0036645.1 mouse_genomes_project X 144799726 144898397 - MGP_C57BL6NJ_P0098152 Chrdl1 protein_coding protein_coding MGP_C57BL6NJ_T0098153.1 MGP_C57BL6NJ_G0036645.1 mouse_genomes_project X 144799728 144898109 - MGP_C57BL6NJ_P0098153 Chrdl1 protein_coding protein_coding MGP_C57BL6NJ_T0096637.1 MGP_C57BL6NJ_G0036217.1 mouse_genomes_project X 49290797 49329679 + MGP_C57BL6NJ_P0096637 Phf6 protein_coding protein_coding MGP_C57BL6NJ_T0096638.1 MGP_C57BL6NJ_G0036217.1 mouse_genomes_project X 49290799 49338591 + MGP_C57BL6NJ_P0096638 Phf6 protein_coding protein_coding MGP_C57BL6NJ_T0096639.1 MGP_C57BL6NJ_G0036217.1 mouse_genomes_project X 49305593 49321795 + Phf6 protein_coding processed_transcript MGP_C57BL6NJ_T0096640.1 MGP_C57BL6NJ_G0036217.1 mouse_genomes_project X 49305595 49321814 + Phf6 protein_coding processed_transcript MGP_C57BL6NJ_T0016956.1 MGP_C57BL6NJ_G0015001.1 mouse_genomes_project X 82594131 82594563 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096160.1 MGP_C57BL6NJ_G0036057.1 mouse_genomes_project X 4469938 4478665 - MGP_C57BL6NJ_P0096160 Dynlt3 protein_coding protein_coding MGP_C57BL6NJ_T0096161.1 MGP_C57BL6NJ_G0036057.1 mouse_genomes_project X 4471680 4475292 - Dynlt3 protein_coding processed_transcript MGP_C57BL6NJ_T0096162.1 MGP_C57BL6NJ_G0036057.1 mouse_genomes_project X 4471947 4478665 - Dynlt3 protein_coding processed_transcript MGP_C57BL6NJ_T0096163.1 MGP_C57BL6NJ_G0036057.1 mouse_genomes_project X 4472009 4473029 - Dynlt3 protein_coding processed_transcript MGP_C57BL6NJ_T0016777.1 MGP_C57BL6NJ_G0014822.1 mouse_genomes_project X 43515421 43516323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016912.1 MGP_C57BL6NJ_G0014957.1 mouse_genomes_project X 73595420 73596068 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102071.1 MGP_C57BL6NJ_G0040117.1 mouse_genomes_project X 72627083 72627218 + Gm26417 snoRNA snoRNA MGP_C57BL6NJ_T0103608.1 MGP_C57BL6NJ_G0041400.1 mouse_genomes_project X 136387981 136391343 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098118.1 MGP_C57BL6NJ_G0036630.1 mouse_genomes_project X 142407126 142413600 - MGP_C57BL6NJ_P0098118 Tex13 protein_coding protein_coding MGP_C57BL6NJ_T0098119.1 MGP_C57BL6NJ_G0036630.1 mouse_genomes_project X 142409434 142411019 - Tex13 protein_coding retained_intron MGP_C57BL6NJ_T0017006.1 MGP_C57BL6NJ_G0015051.1 mouse_genomes_project X 92761403 92761674 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017116.1 MGP_C57BL6NJ_G0015161.1 mouse_genomes_project X 107198031 107199058 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100817.1 MGP_C57BL6NJ_G0038863.1 mouse_genomes_project X 129453085 129453193 + Gm24522 snRNA snRNA MGP_C57BL6NJ_T0096067.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2595094 2606814 + MGP_C57BL6NJ_P0096067 Slc35a2 protein_coding protein_coding MGP_C57BL6NJ_T0096068.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2595297 2606786 + MGP_C57BL6NJ_P0096068 Slc35a2 protein_coding protein_coding MGP_C57BL6NJ_T0096069.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2595376 2606349 + MGP_C57BL6NJ_P0096069 Slc35a2 protein_coding protein_coding MGP_C57BL6NJ_T0096070.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2595431 2606784 + MGP_C57BL6NJ_P0096070 Slc35a2 protein_coding protein_coding MGP_C57BL6NJ_T0096071.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2596889 2606782 + MGP_C57BL6NJ_P0096071 Slc35a2 protein_coding protein_coding MGP_C57BL6NJ_T0096072.1 MGP_C57BL6NJ_G0036026.1 mouse_genomes_project X 2605342 2606786 + Slc35a2 protein_coding processed_transcript MGP_C57BL6NJ_T0011458.1 MGP_C57BL6NJ_G0009543.1 mouse_genomes_project X 103191787 103191882 - Mir374b miRNA miRNA MGP_C57BL6NJ_T0100807.1 MGP_C57BL6NJ_G0038853.1 mouse_genomes_project X 106473199 106473306 - Gm24491 snRNA snRNA MGP_C57BL6NJ_T0016866.1 MGP_C57BL6NJ_G0014911.1 mouse_genomes_project X 64406795 64408232 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017360.1 MGP_C57BL6NJ_G0015405.1 mouse_genomes_project X 162183653 162183929 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103604.1 MGP_C57BL6NJ_G0041396.1 mouse_genomes_project X 106066416 106214724 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096423.1 MGP_C57BL6NJ_G0036149.1 mouse_genomes_project X 33391999 33392600 - MGP_C57BL6NJ_P0096423 Rhox2d protein_coding protein_coding MGP_C57BL6NJ_T0097245.1 MGP_C57BL6NJ_G0036363.1 mouse_genomes_project X 74127397 74129663 + MGP_C57BL6NJ_P0097245 Gm8334 protein_coding protein_coding MGP_C57BL6NJ_T0096172.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4887356 5045474 - MGP_C57BL6NJ_P0096172 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096173.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4975100 5045474 - MGP_C57BL6NJ_P0096173 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096174.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4975100 5045474 - MGP_C57BL6NJ_P0096174 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096175.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4975100 5045007 - MGP_C57BL6NJ_P0096175 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096176.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4975256 5045474 - MGP_C57BL6NJ_P0096176 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096177.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4978517 5045474 - MGP_C57BL6NJ_P0096177 Rpgr protein_coding protein_coding MGP_C57BL6NJ_T0096178.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 4999511 5045312 - Rpgr protein_coding retained_intron MGP_C57BL6NJ_T0096179.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 5035554 5045287 - Rpgr protein_coding retained_intron MGP_C57BL6NJ_T0096180.1 MGP_C57BL6NJ_G0036062.1 mouse_genomes_project X 5042101 5045036 - Rpgr protein_coding processed_transcript MGP_C57BL6NJ_T0102094.1 MGP_C57BL6NJ_G0040140.1 mouse_genomes_project X 136437835 136437949 - Gm24416 snoRNA snoRNA MGP_C57BL6NJ_T0095992.1 MGP_C57BL6NJ_G0036014.1 mouse_genomes_project X 2344958 2355573 + MGP_C57BL6NJ_P0095992 Prickle3 protein_coding protein_coding MGP_C57BL6NJ_T0095993.1 MGP_C57BL6NJ_G0036014.1 mouse_genomes_project X 2345170 2348827 + Prickle3 protein_coding retained_intron MGP_C57BL6NJ_T0095994.1 MGP_C57BL6NJ_G0036014.1 mouse_genomes_project X 2346231 2355573 + MGP_C57BL6NJ_P0095994 Prickle3 protein_coding protein_coding MGP_C57BL6NJ_T0095995.1 MGP_C57BL6NJ_G0036014.1 mouse_genomes_project X 2350427 2355573 + Prickle3 protein_coding retained_intron MGP_C57BL6NJ_T0095996.1 MGP_C57BL6NJ_G0036014.1 mouse_genomes_project X 2353737 2354777 + Prickle3 protein_coding retained_intron MGP_C57BL6NJ_T0097744.1 MGP_C57BL6NJ_G0036510.1 mouse_genomes_project X 107257259 107264635 - MGP_C57BL6NJ_P0097744 Itm2a protein_coding protein_coding MGP_C57BL6NJ_T0098286.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501366 153621466 + MGP_C57BL6NJ_P0098286 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098287.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501366 153558264 + MGP_C57BL6NJ_P0098287 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098288.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501366 153613414 + MGP_C57BL6NJ_P0098288 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098289.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501863 153585244 + MGP_C57BL6NJ_P0098289 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098290.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501875 153613414 + MGP_C57BL6NJ_P0098290 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098291.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501881 153573501 + MGP_C57BL6NJ_P0098291 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098292.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153501881 153621468 + MGP_C57BL6NJ_P0098292 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098293.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153503054 153538482 + MGP_C57BL6NJ_P0098293 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098294.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153541750 153543974 + Phf8 protein_coding retained_intron MGP_C57BL6NJ_T0098295.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153553493 153563293 + MGP_C57BL6NJ_P0098295 Phf8 protein_coding protein_coding MGP_C57BL6NJ_T0098296.1 MGP_C57BL6NJ_G0036670.1 mouse_genomes_project X 153617425 153621468 + Phf8 protein_coding retained_intron MGP_C57BL6NJ_T0097381.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94289129 94443845 - MGP_C57BL6NJ_P0097381 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097382.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94289132 94413210 - MGP_C57BL6NJ_P0097382 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097383.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94289138 94413312 - MGP_C57BL6NJ_P0097383 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097384.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94290371 94443848 - MGP_C57BL6NJ_P0097384 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097385.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94290460 94444176 - MGP_C57BL6NJ_P0097385 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097386.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94291718 94444164 - MGP_C57BL6NJ_P0097386 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097387.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94291749 94444199 - MGP_C57BL6NJ_P0097387 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097388.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94291798 94323931 - MGP_C57BL6NJ_P0097388 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097389.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94292113 94295142 - MGP_C57BL6NJ_P0097389 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097390.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94292114 94299148 - MGP_C57BL6NJ_P0097390 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097391.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94292167 94412423 - MGP_C57BL6NJ_P0097391 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097392.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94318389 94412651 - MGP_C57BL6NJ_P0097392 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097393.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94323851 94443795 - MGP_C57BL6NJ_P0097393 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097394.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94344662 94413365 - MGP_C57BL6NJ_P0097394 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0097395.1 MGP_C57BL6NJ_G0036415.1 mouse_genomes_project X 94357714 94413264 - MGP_C57BL6NJ_P0097395 Arhgef9 protein_coding protein_coding MGP_C57BL6NJ_T0100775.1 MGP_C57BL6NJ_G0038821.1 mouse_genomes_project X 39161904 39162094 + Gm24763 snRNA snRNA MGP_C57BL6NJ_T0017246.1 MGP_C57BL6NJ_G0015291.1 mouse_genomes_project X 139545889 139546096 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103596.1 MGP_C57BL6NJ_G0041388.1 mouse_genomes_project X 85077671 85078712 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016962.1 MGP_C57BL6NJ_G0015007.1 mouse_genomes_project X 84379898 84380265 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096413.1 MGP_C57BL6NJ_G0036139.1 mouse_genomes_project X 32735887 32755000 - MGP_C57BL6NJ_P0096413 Akap14 protein_coding protein_coding MGP_C57BL6NJ_T0096231.1 MGP_C57BL6NJ_G0036074.1 mouse_genomes_project X 8708516 8717197 + MGP_C57BL6NJ_P0096231 Gpr34 protein_coding protein_coding MGP_C57BL6NJ_T0096232.1 MGP_C57BL6NJ_G0036074.1 mouse_genomes_project X 8709196 8717199 + MGP_C57BL6NJ_P0096232 Gpr34 protein_coding protein_coding MGP_C57BL6NJ_T0103622.1 MGP_C57BL6NJ_G0041414.1 mouse_genomes_project X 173062253 173078172 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098468.1 MGP_C57BL6NJ_G0036713.1 mouse_genomes_project X 162603979 162741727 + MGP_C57BL6NJ_P0098468 Map3k15 protein_coding protein_coding MGP_C57BL6NJ_T0102100.1 MGP_C57BL6NJ_G0040146.1 mouse_genomes_project X 149196028 149196157 - Gm25107 snoRNA snoRNA MGP_C57BL6NJ_T0097902.1 MGP_C57BL6NJ_G0036564.1 mouse_genomes_project X 135608973 135613670 - MGP_C57BL6NJ_P0097902 protein_coding protein_coding MGP_C57BL6NJ_T0097646.1 MGP_C57BL6NJ_G0036479.1 mouse_genomes_project X 102926137 102935335 + MGP_C57BL6NJ_P0097646 Cdx4 protein_coding protein_coding MGP_C57BL6NJ_T0017064.1 MGP_C57BL6NJ_G0015109.1 mouse_genomes_project X 102170165 102171570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017319.1 MGP_C57BL6NJ_G0015364.1 mouse_genomes_project X 154628211 154629114 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016724.1 MGP_C57BL6NJ_G0014769.1 mouse_genomes_project X 17017054 17017435 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016835.1 MGP_C57BL6NJ_G0014880.1 mouse_genomes_project X 57816144 57816600 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097346.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93222973 93278025 - MGP_C57BL6NJ_P0097346 Zfx protein_coding protein_coding MGP_C57BL6NJ_T0097347.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93222974 93277518 - MGP_C57BL6NJ_P0097347 Zfx protein_coding protein_coding MGP_C57BL6NJ_T0097348.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93222974 93278025 - MGP_C57BL6NJ_P0097348 Zfx protein_coding protein_coding MGP_C57BL6NJ_T0097349.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93231833 93277993 - MGP_C57BL6NJ_P0097349 Zfx protein_coding protein_coding MGP_C57BL6NJ_T0097350.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93249941 93277727 - MGP_C57BL6NJ_P0097350 Zfx protein_coding protein_coding MGP_C57BL6NJ_T0097351.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93250439 93278300 - Zfx protein_coding processed_transcript MGP_C57BL6NJ_T0097352.1 MGP_C57BL6NJ_G0036406.1 mouse_genomes_project X 93268525 93277750 - Zfx protein_coding retained_intron MGP_C57BL6NJ_T0100770.1 MGP_C57BL6NJ_G0038816.1 mouse_genomes_project X 18226189 18226299 + Gm26131 snRNA snRNA MGP_C57BL6NJ_T0102103.1 MGP_C57BL6NJ_G0040149.1 mouse_genomes_project X 157478175 157478307 + Gm25429 snoRNA snoRNA MGP_C57BL6NJ_T0097819.1 MGP_C57BL6NJ_G0036535.1 mouse_genomes_project X 114947743 114949215 + MGP_C57BL6NJ_P0097819 Ube2dnl1 protein_coding protein_coding MGP_C57BL6NJ_T0098333.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154170657 154253610 + MGP_C57BL6NJ_P0098333 Iqsec2 protein_coding protein_coding MGP_C57BL6NJ_T0098334.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154170661 154253611 + MGP_C57BL6NJ_P0098334 Iqsec2 protein_coding protein_coding MGP_C57BL6NJ_T0098335.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154170862 154220357 + MGP_C57BL6NJ_P0098335 Iqsec2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098336.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154205349 154230396 + Iqsec2 protein_coding processed_transcript MGP_C57BL6NJ_T0098337.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154205349 154220993 + Iqsec2 protein_coding processed_transcript MGP_C57BL6NJ_T0098338.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154205349 154220993 + Iqsec2 protein_coding processed_transcript MGP_C57BL6NJ_T0098339.1 MGP_C57BL6NJ_G0036675.1 mouse_genomes_project X 154229402 154252262 + MGP_C57BL6NJ_P0098339 Iqsec2 protein_coding protein_coding MGP_C57BL6NJ_T0016922.1 MGP_C57BL6NJ_G0014967.1 mouse_genomes_project X 74506049 74506821 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009615.1 MGP_C57BL6NJ_G0007710.1 mouse_genomes_project X 134691915 134712239 + Gm26851 lincRNA lincRNA MGP_C57BL6NJ_T0096557.1 MGP_C57BL6NJ_G0036189.1 mouse_genomes_project X 44518455 44588924 + MGP_C57BL6NJ_P0096557 Bcorl1 protein_coding protein_coding MGP_C57BL6NJ_T0096558.1 MGP_C57BL6NJ_G0036189.1 mouse_genomes_project X 44518713 44542718 + Bcorl1 protein_coding processed_transcript MGP_C57BL6NJ_T0096559.1 MGP_C57BL6NJ_G0036189.1 mouse_genomes_project X 44541831 44560444 + MGP_C57BL6NJ_P0096559 Bcorl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096560.1 MGP_C57BL6NJ_G0036189.1 mouse_genomes_project X 44549562 44565273 + MGP_C57BL6NJ_P0096560 Bcorl1 protein_coding protein_coding MGP_C57BL6NJ_T0103618.1 MGP_C57BL6NJ_G0041410.1 mouse_genomes_project X 156876241 156879821 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097771.1 MGP_C57BL6NJ_G0036521.1 mouse_genomes_project X 111100977 111118818 + MGP_C57BL6NJ_P0097771 Cylc1 protein_coding protein_coding MGP_C57BL6NJ_T0005755.1 MGP_C57BL6NJ_G0004847.1 mouse_genomes_project X 74450871 74465328 - antisense antisense MGP_C57BL6NJ_T0098603.1 MGP_C57BL6NJ_G0036747.1 mouse_genomes_project X 167889949 167891012 - MGP_C57BL6NJ_P0098603 Gm17604 protein_coding protein_coding MGP_C57BL6NJ_T0016862.1 MGP_C57BL6NJ_G0014907.1 mouse_genomes_project X 63389793 63390135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017107.1 MGP_C57BL6NJ_G0015152.1 mouse_genomes_project X 106435844 106436137 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098661.1 MGP_C57BL6NJ_G0036763.1 mouse_genomes_project X 172241736 172252810 - MGP_C57BL6NJ_P0098661 Amelx protein_coding protein_coding MGP_C57BL6NJ_T0098662.1 MGP_C57BL6NJ_G0036763.1 mouse_genomes_project X 172245644 172252810 - Amelx protein_coding processed_transcript MGP_C57BL6NJ_T0098663.1 MGP_C57BL6NJ_G0036763.1 mouse_genomes_project X 172245644 172252810 - MGP_C57BL6NJ_P0098663 Amelx protein_coding protein_coding MGP_C57BL6NJ_T0098664.1 MGP_C57BL6NJ_G0036763.1 mouse_genomes_project X 172245644 172252810 - MGP_C57BL6NJ_P0098664 Amelx protein_coding protein_coding MGP_C57BL6NJ_T0098665.1 MGP_C57BL6NJ_G0036763.1 mouse_genomes_project X 172245644 172252810 - MGP_C57BL6NJ_P0098665 Amelx protein_coding protein_coding MGP_C57BL6NJ_T0097698.1 MGP_C57BL6NJ_G0036496.1 mouse_genomes_project X 105683190 105728829 - MGP_C57BL6NJ_P0097698 Magt1 protein_coding protein_coding MGP_C57BL6NJ_T0097699.1 MGP_C57BL6NJ_G0036496.1 mouse_genomes_project X 105683190 105728836 - MGP_C57BL6NJ_P0097699 Magt1 protein_coding protein_coding MGP_C57BL6NJ_T0097700.1 MGP_C57BL6NJ_G0036496.1 mouse_genomes_project X 105685584 105728716 - MGP_C57BL6NJ_P0097700 Magt1 protein_coding protein_coding MGP_C57BL6NJ_T0097701.1 MGP_C57BL6NJ_G0036496.1 mouse_genomes_project X 105691771 105728710 - MGP_C57BL6NJ_P0097701 Magt1 protein_coding protein_coding MGP_C57BL6NJ_T0095947.1 MGP_C57BL6NJ_G0036003.1 mouse_genomes_project X 1081612 1325583 + MGP_C57BL6NJ_P0095947 Shroom4 protein_coding protein_coding MGP_C57BL6NJ_T0095948.1 MGP_C57BL6NJ_G0036003.1 mouse_genomes_project X 1103511 1279433 + MGP_C57BL6NJ_P0095948 Shroom4 protein_coding protein_coding MGP_C57BL6NJ_T0095949.1 MGP_C57BL6NJ_G0036003.1 mouse_genomes_project X 1273178 1329194 + MGP_C57BL6NJ_P0095949 Shroom4 protein_coding protein_coding MGP_C57BL6NJ_T0011390.1 MGP_C57BL6NJ_G0009475.1 mouse_genomes_project X 33892289 33892369 + Mir3110 miRNA miRNA MGP_C57BL6NJ_T0097180.1 MGP_C57BL6NJ_G0036347.1 mouse_genomes_project X 72813536 72814749 + MGP_C57BL6NJ_P0097180 protein_coding protein_coding MGP_C57BL6NJ_T0099283.1 MGP_C57BL6NJ_G0037347.1 mouse_genomes_project X 121748791 121748915 - Gm25825 scaRNA scaRNA MGP_C57BL6NJ_T0016924.1 MGP_C57BL6NJ_G0014969.1 mouse_genomes_project X 74843319 74844037 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016945.1 MGP_C57BL6NJ_G0014990.1 mouse_genomes_project X 78323269 78323971 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011433.1 MGP_C57BL6NJ_G0009518.1 mouse_genomes_project X 64251031 64251110 - Mir465b-2 miRNA miRNA MGP_C57BL6NJ_T0017045.1 MGP_C57BL6NJ_G0015090.1 mouse_genomes_project X 98416387 98417389 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096421.1 MGP_C57BL6NJ_G0036147.1 mouse_genomes_project X 33355318 33355942 - MGP_C57BL6NJ_P0096421 Rhox2f protein_coding protein_coding MGP_C57BL6NJ_T0096860.1 MGP_C57BL6NJ_G0036298.1 mouse_genomes_project X 70762010 70808290 + MGP_C57BL6NJ_P0096860 Zfp185 protein_coding protein_coding MGP_C57BL6NJ_T0096861.1 MGP_C57BL6NJ_G0036298.1 mouse_genomes_project X 70762031 70808290 + MGP_C57BL6NJ_P0096861 Zfp185 protein_coding protein_coding MGP_C57BL6NJ_T0096862.1 MGP_C57BL6NJ_G0036298.1 mouse_genomes_project X 70762924 70772077 + MGP_C57BL6NJ_P0096862 Zfp185 protein_coding protein_coding MGP_C57BL6NJ_T0096863.1 MGP_C57BL6NJ_G0036298.1 mouse_genomes_project X 70771750 70805690 + MGP_C57BL6NJ_P0096863 Zfp185 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095950.1 MGP_C57BL6NJ_G0036004.1 mouse_genomes_project X 1469382 1602844 + MGP_C57BL6NJ_P0095950 Dgkk protein_coding protein_coding MGP_C57BL6NJ_T0095951.1 MGP_C57BL6NJ_G0036004.1 mouse_genomes_project X 1523840 1602845 + MGP_C57BL6NJ_P0095951 Dgkk protein_coding protein_coding MGP_C57BL6NJ_T0097274.1 MGP_C57BL6NJ_G0036378.1 mouse_genomes_project X 76910563 76912202 + MGP_C57BL6NJ_P0097274 Fam47c protein_coding protein_coding MGP_C57BL6NJ_T0017069.1 MGP_C57BL6NJ_G0015114.1 mouse_genomes_project X 102543336 102544643 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017182.1 MGP_C57BL6NJ_G0015227.1 mouse_genomes_project X 122363003 122364121 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017003.1 MGP_C57BL6NJ_G0015048.1 mouse_genomes_project X 91498128 91498304 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016927.1 MGP_C57BL6NJ_G0014972.1 mouse_genomes_project X 75160906 75161345 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005747.1 MGP_C57BL6NJ_G0004840.1 mouse_genomes_project X 66938641 66943315 - Gm14705 antisense antisense MGP_C57BL6NJ_T0005748.1 MGP_C57BL6NJ_G0004840.1 mouse_genomes_project X 66940003 66942387 - Gm14705 antisense antisense MGP_C57BL6NJ_T0097825.1 MGP_C57BL6NJ_G0036541.1 mouse_genomes_project X 120287899 120291032 + MGP_C57BL6NJ_P0097825 Pabpc5 protein_coding protein_coding MGP_C57BL6NJ_T0097826.1 MGP_C57BL6NJ_G0036541.1 mouse_genomes_project X 120287928 120290876 + MGP_C57BL6NJ_P0097826 Pabpc5 protein_coding protein_coding MGP_C57BL6NJ_T0017228.1 MGP_C57BL6NJ_G0015273.1 mouse_genomes_project X 137563452 137563940 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016741.1 MGP_C57BL6NJ_G0014786.1 mouse_genomes_project X 34675694 34677252 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017030.1 MGP_C57BL6NJ_G0015075.1 mouse_genomes_project X 95495691 95496129 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097752.1 MGP_C57BL6NJ_G0036513.1 mouse_genomes_project X 107669081 107757201 + MGP_C57BL6NJ_P0097752 Fam46d protein_coding protein_coding MGP_C57BL6NJ_T0097753.1 MGP_C57BL6NJ_G0036513.1 mouse_genomes_project X 107692968 107754851 + MGP_C57BL6NJ_P0097753 Fam46d protein_coding protein_coding MGP_C57BL6NJ_T0097754.1 MGP_C57BL6NJ_G0036513.1 mouse_genomes_project X 107693063 107757201 + MGP_C57BL6NJ_P0097754 Fam46d protein_coding protein_coding MGP_C57BL6NJ_T0097755.1 MGP_C57BL6NJ_G0036513.1 mouse_genomes_project X 107693063 107754692 + MGP_C57BL6NJ_P0097755 Fam46d protein_coding protein_coding MGP_C57BL6NJ_T0096974.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841381 71844371 - Naa10 protein_coding processed_transcript MGP_C57BL6NJ_T0096975.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841381 71847224 - MGP_C57BL6NJ_P0096975 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096976.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841383 71847204 - MGP_C57BL6NJ_P0096976 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096977.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841395 71847168 - MGP_C57BL6NJ_P0096977 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096978.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841404 71847164 - MGP_C57BL6NJ_P0096978 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096979.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841428 71847112 - MGP_C57BL6NJ_P0096979 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096980.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841600 71844416 - Naa10 protein_coding processed_transcript MGP_C57BL6NJ_T0096981.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71841982 71847108 - MGP_C57BL6NJ_P0096981 Naa10 protein_coding protein_coding MGP_C57BL6NJ_T0096982.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71842369 71844974 - Naa10 protein_coding retained_intron MGP_C57BL6NJ_T0096983.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71842577 71847186 - Naa10 protein_coding retained_intron MGP_C57BL6NJ_T0096984.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71846256 71847135 - Naa10 protein_coding retained_intron MGP_C57BL6NJ_T0096985.1 MGP_C57BL6NJ_G0036322.1 mouse_genomes_project X 71846392 71847132 - Naa10 protein_coding retained_intron MGP_C57BL6NJ_T0016671.1 MGP_C57BL6NJ_G0014716.1 mouse_genomes_project X 5533923 5534389 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017180.1 MGP_C57BL6NJ_G0015225.1 mouse_genomes_project X 121857577 121858224 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017243.1 MGP_C57BL6NJ_G0015288.1 mouse_genomes_project X 138511880 138512636 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096115.1 MGP_C57BL6NJ_G0036039.1 mouse_genomes_project X 2880818 2883052 - Rbm3 protein_coding processed_transcript MGP_C57BL6NJ_T0096116.1 MGP_C57BL6NJ_G0036039.1 mouse_genomes_project X 2880821 2887445 - MGP_C57BL6NJ_P0096116 Rbm3 protein_coding protein_coding MGP_C57BL6NJ_T0096117.1 MGP_C57BL6NJ_G0036039.1 mouse_genomes_project X 2886221 2887507 - Rbm3 protein_coding retained_intron MGP_C57BL6NJ_T0096728.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55856481 55933846 - MGP_C57BL6NJ_P0096728 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096729.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55856481 56393116 - MGP_C57BL6NJ_P0096729 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096730.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55856481 55970958 - MGP_C57BL6NJ_P0096730 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096731.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55857840 55932624 - Fgf13 protein_coding processed_transcript MGP_C57BL6NJ_T0096732.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55931340 55932572 - Fgf13 protein_coding processed_transcript MGP_C57BL6NJ_T0096733.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 55931343 56392517 - MGP_C57BL6NJ_P0096733 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096734.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 56063047 56393116 - MGP_C57BL6NJ_P0096734 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096735.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 56063124 56392866 - MGP_C57BL6NJ_P0096735 Fgf13 protein_coding protein_coding MGP_C57BL6NJ_T0096736.1 MGP_C57BL6NJ_G0036252.1 mouse_genomes_project X 56391858 56393093 - Fgf13 protein_coding retained_intron MGP_C57BL6NJ_T0016733.1 MGP_C57BL6NJ_G0014778.1 mouse_genomes_project X 31729894 31730269 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096414.1 MGP_C57BL6NJ_G0036140.1 mouse_genomes_project X 32774366 32777986 - MGP_C57BL6NJ_P0096414 Ndufa1 protein_coding protein_coding MGP_C57BL6NJ_T0102083.1 MGP_C57BL6NJ_G0040129.1 mouse_genomes_project X 104290568 104290675 + Gm22430 snoRNA snoRNA MGP_C57BL6NJ_T0097594.1 MGP_C57BL6NJ_G0036462.1 mouse_genomes_project X 101139097 101139403 - MGP_C57BL6NJ_P0097594 Vma21-ps protein_coding protein_coding MGP_C57BL6NJ_T0016938.1 MGP_C57BL6NJ_G0014983.1 mouse_genomes_project X 76843744 76844699 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017007.1 MGP_C57BL6NJ_G0015052.1 mouse_genomes_project X 93056261 93059800 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103605.1 MGP_C57BL6NJ_G0041397.1 mouse_genomes_project X 106098914 106103354 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103568.1 MGP_C57BL6NJ_G0041360.1 mouse_genomes_project X 8231659 8231797 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011470.1 MGP_C57BL6NJ_G0009555.1 mouse_genomes_project X 136886731 136886785 + Mir7646 miRNA miRNA MGP_C57BL6NJ_T0098003.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138038064 138048168 - MGP_C57BL6NJ_P0098003 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098004.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039015 138047856 - MGP_C57BL6NJ_P0098004 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098005.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039044 138049368 - MGP_C57BL6NJ_P0098005 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098006.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039134 138047662 - MGP_C57BL6NJ_P0098006 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098007.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039736 138049396 - MGP_C57BL6NJ_P0098007 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098008.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039762 138046994 - MGP_C57BL6NJ_P0098008 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098009.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039764 138049425 - MGP_C57BL6NJ_P0098009 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098010.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138039892 138046990 - MGP_C57BL6NJ_P0098010 Morf4l2 protein_coding protein_coding MGP_C57BL6NJ_T0098011.1 MGP_C57BL6NJ_G0036597.1 mouse_genomes_project X 138041060 138047783 - Morf4l2 protein_coding processed_transcript MGP_C57BL6NJ_T0016782.1 MGP_C57BL6NJ_G0014827.1 mouse_genomes_project X 44474954 44475302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098433.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161786548 161947215 + MGP_C57BL6NJ_P0098433 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098434.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161836582 161892967 + MGP_C57BL6NJ_P0098434 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098435.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161836658 161950957 + MGP_C57BL6NJ_P0098435 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098436.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161836725 161909422 + MGP_C57BL6NJ_P0098436 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098437.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161836926 161909512 + MGP_C57BL6NJ_P0098437 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098438.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161859072 161907920 + MGP_C57BL6NJ_P0098438 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098439.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161884722 161911925 + MGP_C57BL6NJ_P0098439 Rps6ka3 protein_coding protein_coding MGP_C57BL6NJ_T0098440.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161945033 161946218 + Rps6ka3 protein_coding processed_transcript MGP_C57BL6NJ_T0098441.1 MGP_C57BL6NJ_G0036708.1 mouse_genomes_project X 161945118 161946453 + Rps6ka3 protein_coding retained_intron MGP_C57BL6NJ_T0102057.1 MGP_C57BL6NJ_G0040103.1 mouse_genomes_project X 16883466 16883597 - Gm22592 snoRNA snoRNA MGP_C57BL6NJ_T0100810.1 MGP_C57BL6NJ_G0038856.1 mouse_genomes_project X 110595709 110595900 - Gm26108 snRNA snRNA MGP_C57BL6NJ_T0016953.1 MGP_C57BL6NJ_G0014998.1 mouse_genomes_project X 80844501 80845651 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097156.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72366517 72427036 + MGP_C57BL6NJ_P0097156 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097157.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72366518 72447907 + MGP_C57BL6NJ_P0097157 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097158.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72366518 72447907 + MGP_C57BL6NJ_P0097158 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097159.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72366554 72432931 + MGP_C57BL6NJ_P0097159 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097163.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417576 72432993 + MGP_C57BL6NJ_P0097163 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097164.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417646 72442876 + MGP_C57BL6NJ_P0097164 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097165.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417654 72447907 + MGP_C57BL6NJ_P0097165 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097166.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417654 72447983 + MGP_C57BL6NJ_P0097166 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097167.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417675 72443235 + MGP_C57BL6NJ_P0097167 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097168.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72417680 72425911 + MGP_C57BL6NJ_P0097168 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097170.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72420944 72430213 + MGP_C57BL6NJ_P0097170 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097171.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422323 72439352 + MGP_C57BL6NJ_P0097171 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097172.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422357 72447907 + MGP_C57BL6NJ_P0097172 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097173.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422713 72444415 + MGP_C57BL6NJ_P0097173 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097174.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422746 72445649 + MGP_C57BL6NJ_P0097174 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097175.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422764 72426398 + Ikbkg protein_coding retained_intron MGP_C57BL6NJ_T0097176.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72422805 72439849 + MGP_C57BL6NJ_P0097176 Ikbkg protein_coding protein_coding MGP_C57BL6NJ_T0097177.1 MGP_C57BL6NJ_G0036343.1 mouse_genomes_project X 72431929 72442358 + Ikbkg protein_coding processed_transcript MGP_C57BL6NJ_T0017079.1 MGP_C57BL6NJ_G0015124.1 mouse_genomes_project X 103098447 103098902 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019077.1 MGP_C57BL6NJ_G0016166.1 mouse_genomes_project X 14380368 14390620 - Gm14636 processed_transcript processed_transcript MGP_C57BL6NJ_T0019078.1 MGP_C57BL6NJ_G0016166.1 mouse_genomes_project X 14385441 14390629 - Gm14636 processed_transcript processed_transcript MGP_C57BL6NJ_T0012042.1 MGP_C57BL6NJ_G0010127.1 mouse_genomes_project X 139253383 139253668 - Gm25393 misc_RNA misc_RNA MGP_C57BL6NJ_T0096885.1 MGP_C57BL6NJ_G0036308.1 mouse_genomes_project X 71391443 71465583 + MGP_C57BL6NJ_P0096885 Atp2b3 protein_coding protein_coding MGP_C57BL6NJ_T0096886.1 MGP_C57BL6NJ_G0036308.1 mouse_genomes_project X 71391443 71452528 + MGP_C57BL6NJ_P0096886 Atp2b3 protein_coding protein_coding MGP_C57BL6NJ_T0096887.1 MGP_C57BL6NJ_G0036308.1 mouse_genomes_project X 71391443 71465583 + MGP_C57BL6NJ_P0096887 Atp2b3 protein_coding protein_coding MGP_C57BL6NJ_T0017151.1 MGP_C57BL6NJ_G0015196.1 mouse_genomes_project X 115352303 115355467 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098018.1 MGP_C57BL6NJ_G0036600.1 mouse_genomes_project X 138170205 138180814 - MGP_C57BL6NJ_P0098018 Rab9b protein_coding protein_coding MGP_C57BL6NJ_T0103589.1 MGP_C57BL6NJ_G0041381.1 mouse_genomes_project X 75912814 75916892 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011487.1 MGP_C57BL6NJ_G0009572.1 mouse_genomes_project X 153907647 153907730 + Mirlet7f-2 miRNA miRNA MGP_C57BL6NJ_T0097668.1 MGP_C57BL6NJ_G0036492.1 mouse_genomes_project X 104802869 104806419 + MGP_C57BL6NJ_P0097668 Magee1 protein_coding protein_coding MGP_C57BL6NJ_T0017352.1 MGP_C57BL6NJ_G0015397.1 mouse_genomes_project X 160692714 160695378 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100777.1 MGP_C57BL6NJ_G0038823.1 mouse_genomes_project X 44396798 44396957 + Gm24038 snRNA snRNA MGP_C57BL6NJ_T0016776.1 MGP_C57BL6NJ_G0014821.1 mouse_genomes_project X 42556656 42557064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011393.1 MGP_C57BL6NJ_G0009478.1 mouse_genomes_project X 37526219 37526304 + Gm22413 miRNA miRNA MGP_C57BL6NJ_T0012032.1 MGP_C57BL6NJ_G0010117.1 mouse_genomes_project X 103215445 103215516 + Gm27798 misc_RNA misc_RNA MGP_C57BL6NJ_T0011386.1 MGP_C57BL6NJ_G0009471.1 mouse_genomes_project X 16136295 16136373 - Gm24824 miRNA miRNA MGP_C57BL6NJ_T0097286.1 MGP_C57BL6NJ_G0036383.1 mouse_genomes_project X 81946089 81947336 - MGP_C57BL6NJ_P0097286 Tsga8 protein_coding protein_coding MGP_C57BL6NJ_T0097731.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106995602 107018725 + MGP_C57BL6NJ_P0097731 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097732.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106995602 107020985 + MGP_C57BL6NJ_P0097732 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097733.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106996129 107018751 + MGP_C57BL6NJ_P0097733 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097734.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106996129 107020985 + MGP_C57BL6NJ_P0097734 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097735.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106996273 107018471 + MGP_C57BL6NJ_P0097735 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0097736.1 MGP_C57BL6NJ_G0036508.1 mouse_genomes_project X 106996290 107020981 + MGP_C57BL6NJ_P0097736 A630033H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0017125.1 MGP_C57BL6NJ_G0015170.1 mouse_genomes_project X 110346003 110348409 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097803.1 MGP_C57BL6NJ_G0036531.1 mouse_genomes_project X 112599911 112670383 - MGP_C57BL6NJ_P0097803 Pof1b protein_coding protein_coding MGP_C57BL6NJ_T0017124.1 MGP_C57BL6NJ_G0015169.1 mouse_genomes_project X 109848451 109850003 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096155.1 MGP_C57BL6NJ_G0036056.1 mouse_genomes_project X 4228778 4262838 - MGP_C57BL6NJ_P0096155 Cybb protein_coding protein_coding MGP_C57BL6NJ_T0096156.1 MGP_C57BL6NJ_G0036056.1 mouse_genomes_project X 4240448 4262783 - MGP_C57BL6NJ_P0096156 Cybb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096157.1 MGP_C57BL6NJ_G0036056.1 mouse_genomes_project X 4242904 4245057 - Cybb protein_coding retained_intron MGP_C57BL6NJ_T0096158.1 MGP_C57BL6NJ_G0036056.1 mouse_genomes_project X 4250541 4279479 - MGP_C57BL6NJ_P0096158 Cybb protein_coding protein_coding MGP_C57BL6NJ_T0096159.1 MGP_C57BL6NJ_G0036056.1 mouse_genomes_project X 4258501 4262784 - Cybb protein_coding retained_intron MGP_C57BL6NJ_T0017375.1 MGP_C57BL6NJ_G0015420.1 mouse_genomes_project X 165609685 165610371 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098491.1 MGP_C57BL6NJ_G0036717.1 mouse_genomes_project X 163275513 163377100 - MGP_C57BL6NJ_P0098491 Ppef1 protein_coding protein_coding MGP_C57BL6NJ_T0098492.1 MGP_C57BL6NJ_G0036717.1 mouse_genomes_project X 163294471 163388772 - MGP_C57BL6NJ_P0098492 Ppef1 protein_coding protein_coding MGP_C57BL6NJ_T0098493.1 MGP_C57BL6NJ_G0036717.1 mouse_genomes_project X 163348860 163377064 - MGP_C57BL6NJ_P0098493 Ppef1 protein_coding protein_coding MGP_C57BL6NJ_T0102098.1 MGP_C57BL6NJ_G0040144.1 mouse_genomes_project X 144922349 144922478 + Gm23325 snoRNA snoRNA MGP_C57BL6NJ_T0102086.1 MGP_C57BL6NJ_G0040132.1 mouse_genomes_project X 119855068 119855184 - Gm26182 snoRNA snoRNA MGP_C57BL6NJ_T0016672.1 MGP_C57BL6NJ_G0014717.1 mouse_genomes_project X 5551397 5551830 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017146.1 MGP_C57BL6NJ_G0015191.1 mouse_genomes_project X 114236177 114236916 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097728.1 MGP_C57BL6NJ_G0036507.1 mouse_genomes_project X 106933027 106949506 + MGP_C57BL6NJ_P0097728 P2ry10 protein_coding protein_coding MGP_C57BL6NJ_T0097729.1 MGP_C57BL6NJ_G0036507.1 mouse_genomes_project X 106933769 106949510 + MGP_C57BL6NJ_P0097729 P2ry10 protein_coding protein_coding MGP_C57BL6NJ_T0097730.1 MGP_C57BL6NJ_G0036507.1 mouse_genomes_project X 106933813 106949510 + MGP_C57BL6NJ_P0097730 P2ry10 protein_coding protein_coding MGP_C57BL6NJ_T0100835.1 MGP_C57BL6NJ_G0038881.1 mouse_genomes_project X 171624494 171624606 - Gm23197 snRNA snRNA MGP_C57BL6NJ_T0017257.1 MGP_C57BL6NJ_G0015302.1 mouse_genomes_project X 142220763 142221217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016892.1 MGP_C57BL6NJ_G0014937.1 mouse_genomes_project X 68425663 68426268 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096655.1 MGP_C57BL6NJ_G0036223.1 mouse_genomes_project X 49863245 49871591 + MGP_C57BL6NJ_P0096655 Etd protein_coding protein_coding MGP_C57BL6NJ_T0096434.1 MGP_C57BL6NJ_G0036157.1 mouse_genomes_project X 33738889 33744106 + MGP_C57BL6NJ_P0096434 Rhox10 protein_coding protein_coding MGP_C57BL6NJ_T0096547.1 MGP_C57BL6NJ_G0036186.1 mouse_genomes_project X 44310892 44326034 + MGP_C57BL6NJ_P0096547 Sash3 protein_coding protein_coding MGP_C57BL6NJ_T0017231.1 MGP_C57BL6NJ_G0015276.1 mouse_genomes_project X 137595492 137597376 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009612.1 MGP_C57BL6NJ_G0007707.1 mouse_genomes_project X 117721300 117721669 + Gm28579 lincRNA lincRNA MGP_C57BL6NJ_T0011396.1 MGP_C57BL6NJ_G0009481.1 mouse_genomes_project X 47492258 47492341 - Gm23417 miRNA miRNA MGP_C57BL6NJ_T0016717.1 MGP_C57BL6NJ_G0014762.1 mouse_genomes_project X 15745122 15745318 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098120.1 MGP_C57BL6NJ_G0036631.1 mouse_genomes_project X 142510445 142543888 + MGP_C57BL6NJ_P0098120 Vsig1 protein_coding protein_coding MGP_C57BL6NJ_T0098121.1 MGP_C57BL6NJ_G0036631.1 mouse_genomes_project X 142526075 142542649 + Vsig1 protein_coding processed_transcript MGP_C57BL6NJ_T0100757.1 MGP_C57BL6NJ_G0038803.1 mouse_genomes_project X 2812725 2812827 + Gm22083 snRNA snRNA MGP_C57BL6NJ_T0100798.1 MGP_C57BL6NJ_G0038844.1 mouse_genomes_project X 100397140 100397203 + Gm24577 snRNA snRNA MGP_C57BL6NJ_T0103565.1 MGP_C57BL6NJ_G0041357.1 mouse_genomes_project X 3833240 3833768 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016786.1 MGP_C57BL6NJ_G0014831.1 mouse_genomes_project X 45760621 45760880 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098547.1 MGP_C57BL6NJ_G0036731.1 mouse_genomes_project X 166575205 166576396 - MGP_C57BL6NJ_P0098547 Rnf138rt1 protein_coding protein_coding MGP_C57BL6NJ_T0016917.1 MGP_C57BL6NJ_G0014962.1 mouse_genomes_project X 74138323 74140020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099208.1 MGP_C57BL6NJ_G0037272.1 mouse_genomes_project X 166964863 166964984 + n-R5s18 rRNA rRNA MGP_C57BL6NJ_T0100820.1 MGP_C57BL6NJ_G0038866.1 mouse_genomes_project X 142280740 142280847 + Gm23199 snRNA snRNA MGP_C57BL6NJ_T0097317.1 MGP_C57BL6NJ_G0036391.1 mouse_genomes_project X 88221768 88228075 - MGP_C57BL6NJ_P0097317 Pet2 protein_coding protein_coding MGP_C57BL6NJ_T0097318.1 MGP_C57BL6NJ_G0036391.1 mouse_genomes_project X 88221768 88228075 - MGP_C57BL6NJ_P0097318 Pet2 protein_coding protein_coding MGP_C57BL6NJ_T0097975.1 MGP_C57BL6NJ_G0036583.1 mouse_genomes_project X 137223172 137224858 + MGP_C57BL6NJ_P0097975 protein_coding protein_coding MGP_C57BL6NJ_T0016817.1 MGP_C57BL6NJ_G0014862.1 mouse_genomes_project X 54470751 54471738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099201.1 MGP_C57BL6NJ_G0037265.1 mouse_genomes_project X 153768656 153768775 + n-R5s13 rRNA rRNA MGP_C57BL6NJ_T0097247.1 MGP_C57BL6NJ_G0036365.1 mouse_genomes_project X 74491853 74492732 + MGP_C57BL6NJ_P0097247 protein_coding protein_coding MGP_C57BL6NJ_T0096430.1 MGP_C57BL6NJ_G0036155.1 mouse_genomes_project X 33679073 33685043 - Btg1-ps1 protein_coding unprocessed_pseudogene MGP_C57BL6NJ_T0096433.1 MGP_C57BL6NJ_G0036155.1 mouse_genomes_project X 33679808 33685043 - MGP_C57BL6NJ_P0096433 Btg1-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0096186.1 MGP_C57BL6NJ_G0036065.1 mouse_genomes_project X 5571506 5572942 + Mid1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0096187.1 MGP_C57BL6NJ_G0036065.1 mouse_genomes_project X 5571512 5574878 + MGP_C57BL6NJ_P0096187 Mid1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0096188.1 MGP_C57BL6NJ_G0036065.1 mouse_genomes_project X 5573883 5576184 + MGP_C57BL6NJ_P0096188 Mid1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0096189.1 MGP_C57BL6NJ_G0036065.1 mouse_genomes_project X 5573883 5576184 + MGP_C57BL6NJ_P0096189 Mid1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0096190.1 MGP_C57BL6NJ_G0036065.1 mouse_genomes_project X 5573961 5574878 + MGP_C57BL6NJ_P0096190 Mid1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0097326.1 MGP_C57BL6NJ_G0036399.1 mouse_genomes_project X 91179106 91677178 - MGP_C57BL6NJ_P0097326 Mageb18 protein_coding protein_coding MGP_C57BL6NJ_T0097327.1 MGP_C57BL6NJ_G0036399.1 mouse_genomes_project X 91179428 91180999 - MGP_C57BL6NJ_P0097327 Mageb18 protein_coding protein_coding MGP_C57BL6NJ_T0017304.1 MGP_C57BL6NJ_G0015349.1 mouse_genomes_project X 148630120 148631053 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005780.1 MGP_C57BL6NJ_G0004865.1 mouse_genomes_project X 172094880 172168921 - Gm15261 antisense antisense MGP_C57BL6NJ_T0016870.1 MGP_C57BL6NJ_G0014915.1 mouse_genomes_project X 65151703 65153881 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017282.1 MGP_C57BL6NJ_G0015327.1 mouse_genomes_project X 145828724 145828880 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097859.1 MGP_C57BL6NJ_G0036553.1 mouse_genomes_project X 134917175 134940540 + MGP_C57BL6NJ_P0097859 Srpx2 protein_coding protein_coding MGP_C57BL6NJ_T0097860.1 MGP_C57BL6NJ_G0036553.1 mouse_genomes_project X 134917197 134941172 + MGP_C57BL6NJ_P0097860 Srpx2 protein_coding protein_coding MGP_C57BL6NJ_T0103621.1 MGP_C57BL6NJ_G0041413.1 mouse_genomes_project X 173062253 173069671 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005758.1 MGP_C57BL6NJ_G0004850.1 mouse_genomes_project X 94736061 94823231 + antisense antisense MGP_C57BL6NJ_T0017270.1 MGP_C57BL6NJ_G0015315.1 mouse_genomes_project X 143727441 143728383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012039.1 MGP_C57BL6NJ_G0010124.1 mouse_genomes_project X 133629217 133629420 + Gm22143 misc_RNA misc_RNA MGP_C57BL6NJ_T0017211.1 MGP_C57BL6NJ_G0015256.1 mouse_genomes_project X 134025871 134026659 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017185.1 MGP_C57BL6NJ_G0015230.1 mouse_genomes_project X 122701172 122701468 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096468.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37262904 37481225 + Gria3 protein_coding retained_intron MGP_C57BL6NJ_T0096469.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263178 37559102 + MGP_C57BL6NJ_P0096469 Gria3 protein_coding protein_coding MGP_C57BL6NJ_T0096470.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263316 37561118 + MGP_C57BL6NJ_P0096470 Gria3 protein_coding protein_coding MGP_C57BL6NJ_T0096471.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263410 37559109 + Gria3 protein_coding retained_intron MGP_C57BL6NJ_T0096472.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263448 37561115 + MGP_C57BL6NJ_P0096472 Gria3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096473.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263494 37481680 + Gria3 protein_coding retained_intron MGP_C57BL6NJ_T0096474.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37263577 37555012 + MGP_C57BL6NJ_P0096474 Gria3 protein_coding protein_coding MGP_C57BL6NJ_T0096475.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37264752 37338960 + MGP_C57BL6NJ_P0096475 Gria3 protein_coding protein_coding MGP_C57BL6NJ_T0096476.1 MGP_C57BL6NJ_G0036170.1 mouse_genomes_project X 37478322 37489386 + Gria3 protein_coding retained_intron MGP_C57BL6NJ_T0103620.1 MGP_C57BL6NJ_G0041412.1 mouse_genomes_project X 162941516 162941809 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011472.1 MGP_C57BL6NJ_G0009557.1 mouse_genomes_project X 137388645 137388761 + Mir6383 miRNA miRNA MGP_C57BL6NJ_T0017112.1 MGP_C57BL6NJ_G0015157.1 mouse_genomes_project X 106639127 106639419 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096722.1 MGP_C57BL6NJ_G0036250.1 mouse_genomes_project X 54769775 54778553 + MGP_C57BL6NJ_P0096722 Zic3 protein_coding protein_coding MGP_C57BL6NJ_T0096723.1 MGP_C57BL6NJ_G0036250.1 mouse_genomes_project X 54777747 54783664 + MGP_C57BL6NJ_P0096723 Zic3 protein_coding protein_coding MGP_C57BL6NJ_T0096724.1 MGP_C57BL6NJ_G0036250.1 mouse_genomes_project X 54778103 54783664 + MGP_C57BL6NJ_P0096724 Zic3 protein_coding protein_coding MGP_C57BL6NJ_T0096725.1 MGP_C57BL6NJ_G0036250.1 mouse_genomes_project X 54778114 54790505 + MGP_C57BL6NJ_P0096725 Zic3 protein_coding protein_coding MGP_C57BL6NJ_T0098504.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163758106 163948387 + MGP_C57BL6NJ_P0098504 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098505.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163758136 163948401 + MGP_C57BL6NJ_P0098505 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098506.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163846832 163948453 + MGP_C57BL6NJ_P0098506 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098507.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163846854 163949714 + MGP_C57BL6NJ_P0098507 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098508.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163846854 163949697 + MGP_C57BL6NJ_P0098508 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098509.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163847142 163937131 + MGP_C57BL6NJ_P0098509 Scml2 protein_coding protein_coding MGP_C57BL6NJ_T0098510.1 MGP_C57BL6NJ_G0036721.1 mouse_genomes_project X 163915434 163920726 + Scml2 protein_coding processed_transcript MGP_C57BL6NJ_T0017346.1 MGP_C57BL6NJ_G0015391.1 mouse_genomes_project X 160088633 160088765 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097586.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082272 101129301 + MGP_C57BL6NJ_P0097586 Ogt protein_coding protein_coding MGP_C57BL6NJ_T0097587.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082274 101095001 + Ogt protein_coding retained_intron MGP_C57BL6NJ_T0097588.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082276 101130712 + MGP_C57BL6NJ_P0097588 Ogt protein_coding protein_coding MGP_C57BL6NJ_T0097589.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082306 101096442 + Ogt protein_coding processed_transcript MGP_C57BL6NJ_T0097590.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082320 101096710 + Ogt protein_coding retained_intron MGP_C57BL6NJ_T0097591.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101082352 101095018 + Ogt protein_coding retained_intron MGP_C57BL6NJ_T0097592.1 MGP_C57BL6NJ_G0036461.1 mouse_genomes_project X 101097468 101129519 + Ogt protein_coding processed_transcript MGP_C57BL6NJ_T0096004.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418261 2422576 + MGP_C57BL6NJ_P0096004 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096005.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418508 2424484 + MGP_C57BL6NJ_P0096005 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096006.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418528 2424274 + MGP_C57BL6NJ_P0096006 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096007.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418537 2424485 + MGP_C57BL6NJ_P0096007 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096008.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418538 2422576 + MGP_C57BL6NJ_P0096008 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096009.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418538 2424466 + MGP_C57BL6NJ_P0096009 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096010.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418548 2424234 + MGP_C57BL6NJ_P0096010 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096011.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418643 2420575 + MGP_C57BL6NJ_P0096011 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096012.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418645 2422560 + MGP_C57BL6NJ_P0096012 Wdr45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096013.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2418650 2422575 + MGP_C57BL6NJ_P0096013 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096014.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2419021 2422616 + Wdr45 protein_coding processed_transcript MGP_C57BL6NJ_T0096015.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2419215 2424287 + MGP_C57BL6NJ_P0096015 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096016.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2419614 2422311 + MGP_C57BL6NJ_P0096016 Wdr45 protein_coding protein_coding MGP_C57BL6NJ_T0096017.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2419828 2422164 + Wdr45 protein_coding processed_transcript MGP_C57BL6NJ_T0096018.1 MGP_C57BL6NJ_G0036018.1 mouse_genomes_project X 2422856 2423774 + Wdr45 protein_coding processed_transcript MGP_C57BL6NJ_T0096779.1 MGP_C57BL6NJ_G0036273.1 mouse_genomes_project X 66301622 66344757 + MGP_C57BL6NJ_P0096779 Fmr1nb protein_coding protein_coding MGP_C57BL6NJ_T0096780.1 MGP_C57BL6NJ_G0036273.1 mouse_genomes_project X 66301664 66344757 + MGP_C57BL6NJ_P0096780 Fmr1nb protein_coding protein_coding MGP_C57BL6NJ_T0096781.1 MGP_C57BL6NJ_G0036273.1 mouse_genomes_project X 66301717 66344757 + MGP_C57BL6NJ_P0096781 Fmr1nb protein_coding protein_coding MGP_C57BL6NJ_T0097414.1 MGP_C57BL6NJ_G0036422.1 mouse_genomes_project X 95554294 95597847 - MGP_C57BL6NJ_P0097414 Vsig4 protein_coding protein_coding MGP_C57BL6NJ_T0097415.1 MGP_C57BL6NJ_G0036422.1 mouse_genomes_project X 95557041 95597821 - Vsig4 protein_coding processed_transcript MGP_C57BL6NJ_T0096674.1 MGP_C57BL6NJ_G0036235.1 mouse_genomes_project X 53201376 53203064 + MGP_C57BL6NJ_P0096674 protein_coding protein_coding MGP_C57BL6NJ_T0017054.1 MGP_C57BL6NJ_G0015099.1 mouse_genomes_project X 100897302 100897514 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096078.1 MGP_C57BL6NJ_G0036028.1 mouse_genomes_project X 2611694 2620948 + MGP_C57BL6NJ_P0096078 Timm17b protein_coding protein_coding MGP_C57BL6NJ_T0096079.1 MGP_C57BL6NJ_G0036028.1 mouse_genomes_project X 2612008 2618927 + MGP_C57BL6NJ_P0096079 Timm17b protein_coding protein_coding MGP_C57BL6NJ_T0096080.1 MGP_C57BL6NJ_G0036028.1 mouse_genomes_project X 2618710 2619567 + Timm17b protein_coding retained_intron MGP_C57BL6NJ_T0100791.1 MGP_C57BL6NJ_G0038837.1 mouse_genomes_project X 73102014 73102121 - Gm25629 snRNA snRNA MGP_C57BL6NJ_T0017359.1 MGP_C57BL6NJ_G0015404.1 mouse_genomes_project X 161995850 161996114 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016872.1 MGP_C57BL6NJ_G0014917.1 mouse_genomes_project X 65532854 65533157 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019102.1 MGP_C57BL6NJ_G0016173.1 mouse_genomes_project X 58025499 58093490 + C230004F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019103.1 MGP_C57BL6NJ_G0016173.1 mouse_genomes_project X 58025499 58044539 + C230004F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019104.1 MGP_C57BL6NJ_G0016173.1 mouse_genomes_project X 58025499 58030398 + C230004F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019105.1 MGP_C57BL6NJ_G0016173.1 mouse_genomes_project X 58025499 58049031 + C230004F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019106.1 MGP_C57BL6NJ_G0016173.1 mouse_genomes_project X 58025511 58093490 + C230004F18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0098043.1 MGP_C57BL6NJ_G0036608.1 mouse_genomes_project X 138977011 140345752 + MGP_C57BL6NJ_P0098043 Il1rapl2 protein_coding protein_coding MGP_C57BL6NJ_T0098044.1 MGP_C57BL6NJ_G0036608.1 mouse_genomes_project X 138977422 139984895 + Il1rapl2 protein_coding retained_intron MGP_C57BL6NJ_T0098045.1 MGP_C57BL6NJ_G0036608.1 mouse_genomes_project X 139059082 140345430 + MGP_C57BL6NJ_P0098045 Il1rapl2 protein_coding protein_coding MGP_C57BL6NJ_T0096877.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368583 71379225 + Bgn protein_coding processed_transcript MGP_C57BL6NJ_T0096878.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368583 71382173 + MGP_C57BL6NJ_P0096878 Bgn protein_coding protein_coding MGP_C57BL6NJ_T0096879.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368604 71378877 + Bgn protein_coding retained_intron MGP_C57BL6NJ_T0096880.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368614 71371281 + Bgn protein_coding retained_intron MGP_C57BL6NJ_T0096881.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368616 71382169 + MGP_C57BL6NJ_P0096881 Bgn protein_coding protein_coding MGP_C57BL6NJ_T0096882.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71368620 71378862 + Bgn protein_coding retained_intron MGP_C57BL6NJ_T0096883.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71378536 71379789 + Bgn protein_coding processed_transcript MGP_C57BL6NJ_T0096884.1 MGP_C57BL6NJ_G0036307.1 mouse_genomes_project X 71381143 71382166 + Bgn protein_coding processed_transcript MGP_C57BL6NJ_T0012020.1 MGP_C57BL6NJ_G0010105.1 mouse_genomes_project X 46245286 46245581 + Gm23385 misc_RNA misc_RNA MGP_C57BL6NJ_T0097298.1 MGP_C57BL6NJ_G0036384.1 mouse_genomes_project X 83836155 83855955 + MGP_C57BL6NJ_P0097298 Fthl17a protein_coding protein_coding MGP_C57BL6NJ_T0096251.1 MGP_C57BL6NJ_G0036087.1 mouse_genomes_project X 12287260 12501170 - MGP_C57BL6NJ_P0096251 Efhc2 protein_coding protein_coding MGP_C57BL6NJ_T0011438.1 MGP_C57BL6NJ_G0009523.1 mouse_genomes_project X 69230476 69230568 - Gm23945 miRNA miRNA MGP_C57BL6NJ_T0017300.1 MGP_C57BL6NJ_G0015345.1 mouse_genomes_project X 148171592 148172066 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097512.1 MGP_C57BL6NJ_G0036447.1 mouse_genomes_project X 100216076 100448795 - MGP_C57BL6NJ_P0097512 Tex11 protein_coding protein_coding MGP_C57BL6NJ_T0097513.1 MGP_C57BL6NJ_G0036447.1 mouse_genomes_project X 100216076 100448823 - MGP_C57BL6NJ_P0097513 Tex11 protein_coding protein_coding MGP_C57BL6NJ_T0097514.1 MGP_C57BL6NJ_G0036447.1 mouse_genomes_project X 100254044 100448823 - MGP_C57BL6NJ_P0097514 Tex11 protein_coding protein_coding MGP_C57BL6NJ_T0096154.1 MGP_C57BL6NJ_G0036055.1 mouse_genomes_project X 4041186 4095017 + MGP_C57BL6NJ_P0096154 protein_coding protein_coding MGP_C57BL6NJ_T0096527.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 43965387 44045708 - MGP_C57BL6NJ_P0096527 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096528.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 43965389 44045708 - MGP_C57BL6NJ_P0096528 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096529.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 43965652 44045741 - MGP_C57BL6NJ_P0096529 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096530.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 43998155 44045585 - MGP_C57BL6NJ_P0096530 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096531.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 44026292 44045621 - MGP_C57BL6NJ_P0096531 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096532.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 44040222 44046130 - MGP_C57BL6NJ_P0096532 Smarca1 protein_coding protein_coding MGP_C57BL6NJ_T0096533.1 MGP_C57BL6NJ_G0036182.1 mouse_genomes_project X 44042927 44046163 - Smarca1 protein_coding processed_transcript MGP_C57BL6NJ_T0097380.1 MGP_C57BL6NJ_G0036414.1 mouse_genomes_project X 94260929 94266203 - MGP_C57BL6NJ_P0097380 Spin4 protein_coding protein_coding MGP_C57BL6NJ_T0100778.1 MGP_C57BL6NJ_G0038824.1 mouse_genomes_project X 44470142 44470246 + Gm22528 snRNA snRNA MGP_C57BL6NJ_T0096404.1 MGP_C57BL6NJ_G0036135.1 mouse_genomes_project X 32623205 32624779 + MGP_C57BL6NJ_P0096404 Sowahd protein_coding protein_coding MGP_C57BL6NJ_T0097492.1 MGP_C57BL6NJ_G0036443.1 mouse_genomes_project X 99994799 99997855 - Pdzd11 protein_coding retained_intron MGP_C57BL6NJ_T0097493.1 MGP_C57BL6NJ_G0036443.1 mouse_genomes_project X 99994802 99998485 - MGP_C57BL6NJ_P0097493 Pdzd11 protein_coding protein_coding MGP_C57BL6NJ_T0097494.1 MGP_C57BL6NJ_G0036443.1 mouse_genomes_project X 99994824 99997852 - MGP_C57BL6NJ_P0097494 Pdzd11 protein_coding protein_coding MGP_C57BL6NJ_T0097495.1 MGP_C57BL6NJ_G0036443.1 mouse_genomes_project X 99995293 99998188 - Pdzd11 protein_coding processed_transcript MGP_C57BL6NJ_T0016765.1 MGP_C57BL6NJ_G0014810.1 mouse_genomes_project X 39531412 39531695 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016818.1 MGP_C57BL6NJ_G0014863.1 mouse_genomes_project X 54480225 54480819 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096333.1 MGP_C57BL6NJ_G0036109.1 mouse_genomes_project X 16370964 16406826 - MGP_C57BL6NJ_P0096333 Zfp182 protein_coding protein_coding MGP_C57BL6NJ_T0096334.1 MGP_C57BL6NJ_G0036109.1 mouse_genomes_project X 16372085 16406740 - MGP_C57BL6NJ_P0096334 Zfp182 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096335.1 MGP_C57BL6NJ_G0036109.1 mouse_genomes_project X 16373610 16407090 - Zfp182 protein_coding processed_transcript MGP_C57BL6NJ_T0096336.1 MGP_C57BL6NJ_G0036109.1 mouse_genomes_project X 16402451 16406817 - Zfp182 protein_coding processed_transcript MGP_C57BL6NJ_T0097918.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794336 135798282 + MGP_C57BL6NJ_P0097918 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097919.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794343 135798291 + MGP_C57BL6NJ_P0097919 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097920.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794361 135795687 + Armcx1 protein_coding processed_transcript MGP_C57BL6NJ_T0097921.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794361 135798284 + MGP_C57BL6NJ_P0097921 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097922.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794362 135798291 + MGP_C57BL6NJ_P0097922 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097923.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794376 135795877 + Armcx1 protein_coding processed_transcript MGP_C57BL6NJ_T0097924.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794376 135795402 + Armcx1 protein_coding processed_transcript MGP_C57BL6NJ_T0097925.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794386 135798282 + MGP_C57BL6NJ_P0097925 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097926.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135794393 135798291 + MGP_C57BL6NJ_P0097926 Armcx1 protein_coding protein_coding MGP_C57BL6NJ_T0097927.1 MGP_C57BL6NJ_G0036570.1 mouse_genomes_project X 135795630 135796889 + Armcx1 protein_coding processed_transcript MGP_C57BL6NJ_T0011477.1 MGP_C57BL6NJ_G0009562.1 mouse_genomes_project X 146630325 146630396 + Mir3472 miRNA miRNA MGP_C57BL6NJ_T0017216.1 MGP_C57BL6NJ_G0015261.1 mouse_genomes_project X 135548800 135550537 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011490.1 MGP_C57BL6NJ_G0009575.1 mouse_genomes_project X 169911912 169912040 + Gm44376 miRNA miRNA MGP_C57BL6NJ_T0098340.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154261394 154307359 + MGP_C57BL6NJ_P0098340 Kdm5c protein_coding protein_coding MGP_C57BL6NJ_T0098341.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154261603 154308121 + MGP_C57BL6NJ_P0098341 Kdm5c protein_coding protein_coding MGP_C57BL6NJ_T0098342.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154261628 154275118 + Kdm5c protein_coding retained_intron MGP_C57BL6NJ_T0098343.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154261646 154307363 + MGP_C57BL6NJ_P0098343 Kdm5c protein_coding protein_coding MGP_C57BL6NJ_T0098344.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154303396 154305147 + MGP_C57BL6NJ_P0098344 Kdm5c protein_coding protein_coding MGP_C57BL6NJ_T0098345.1 MGP_C57BL6NJ_G0036676.1 mouse_genomes_project X 154305503 154306987 + MGP_C57BL6NJ_P0098345 Kdm5c protein_coding protein_coding MGP_C57BL6NJ_T0019142.1 MGP_C57BL6NJ_G0016184.1 mouse_genomes_project X 136454227 136474957 + processed_transcript processed_transcript MGP_C57BL6NJ_T0097325.1 MGP_C57BL6NJ_G0036398.1 mouse_genomes_project X 91045905 91070038 - MGP_C57BL6NJ_P0097325 Mageb1 protein_coding protein_coding MGP_C57BL6NJ_T0011413.1 MGP_C57BL6NJ_G0009498.1 mouse_genomes_project X 55565798 55565905 + Gm44333 miRNA miRNA MGP_C57BL6NJ_T0098186.1 MGP_C57BL6NJ_G0036650.1 mouse_genomes_project X 145950092 146258429 - MGP_C57BL6NJ_P0098186 Trpc5 protein_coding protein_coding MGP_C57BL6NJ_T0098187.1 MGP_C57BL6NJ_G0036650.1 mouse_genomes_project X 145991291 146258252 - Trpc5 protein_coding retained_intron MGP_C57BL6NJ_T0017011.1 MGP_C57BL6NJ_G0015056.1 mouse_genomes_project X 93168049 93168816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017111.1 MGP_C57BL6NJ_G0015156.1 mouse_genomes_project X 106570338 106570744 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017141.1 MGP_C57BL6NJ_G0015186.1 mouse_genomes_project X 113019190 113020278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017135.1 MGP_C57BL6NJ_G0015180.1 mouse_genomes_project X 112745247 112745410 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096422.1 MGP_C57BL6NJ_G0036148.1 mouse_genomes_project X 33355318 33355926 - MGP_C57BL6NJ_P0096422 Rhox2h protein_coding protein_coding MGP_C57BL6NJ_T0017184.1 MGP_C57BL6NJ_G0015229.1 mouse_genomes_project X 122583925 122585482 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097160.1 MGP_C57BL6NJ_G0036344.1 mouse_genomes_project X 72385875 72422237 - MGP_C57BL6NJ_P0097160 G6pdx protein_coding protein_coding MGP_C57BL6NJ_T0097161.1 MGP_C57BL6NJ_G0036344.1 mouse_genomes_project X 72387251 72421919 - MGP_C57BL6NJ_P0097161 G6pdx protein_coding protein_coding MGP_C57BL6NJ_T0097162.1 MGP_C57BL6NJ_G0036344.1 mouse_genomes_project X 72390195 72421892 - G6pdx protein_coding processed_transcript MGP_C57BL6NJ_T0097169.1 MGP_C57BL6NJ_G0036344.1 mouse_genomes_project X 72420729 72421923 - G6pdx protein_coding retained_intron MGP_C57BL6NJ_T0097056.1 MGP_C57BL6NJ_G0036331.1 mouse_genomes_project X 72211102 72214303 + MGP_C57BL6NJ_P0097056 Emd protein_coding protein_coding MGP_C57BL6NJ_T0097057.1 MGP_C57BL6NJ_G0036331.1 mouse_genomes_project X 72211167 72213777 + MGP_C57BL6NJ_P0097057 Emd protein_coding protein_coding MGP_C57BL6NJ_T0097058.1 MGP_C57BL6NJ_G0036331.1 mouse_genomes_project X 72211176 72212101 + Emd protein_coding processed_transcript MGP_C57BL6NJ_T0097059.1 MGP_C57BL6NJ_G0036331.1 mouse_genomes_project X 72211225 72217421 + MGP_C57BL6NJ_P0097059 Emd protein_coding protein_coding MGP_C57BL6NJ_T0097060.1 MGP_C57BL6NJ_G0036331.1 mouse_genomes_project X 72211231 72213739 + MGP_C57BL6NJ_P0097060 Emd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017192.1 MGP_C57BL6NJ_G0015237.1 mouse_genomes_project X 127568598 127568853 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102102.1 MGP_C57BL6NJ_G0040148.1 mouse_genomes_project X 153526317 153526423 - Gm24460 snoRNA snoRNA MGP_C57BL6NJ_T0097039.1 MGP_C57BL6NJ_G0036329.1 mouse_genomes_project X 72132754 72162695 + MGP_C57BL6NJ_P0097039 Tktl1 protein_coding protein_coding MGP_C57BL6NJ_T0097040.1 MGP_C57BL6NJ_G0036329.1 mouse_genomes_project X 72132785 72151235 + MGP_C57BL6NJ_P0097040 Tktl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016734.1 MGP_C57BL6NJ_G0014779.1 mouse_genomes_project X 31730758 31731364 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017258.1 MGP_C57BL6NJ_G0015303.1 mouse_genomes_project X 142396750 142399289 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017110.1 MGP_C57BL6NJ_G0015155.1 mouse_genomes_project X 106569935 106570153 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016932.1 MGP_C57BL6NJ_G0014977.1 mouse_genomes_project X 75937416 75938185 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016946.1 MGP_C57BL6NJ_G0014991.1 mouse_genomes_project X 78472318 78472477 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011465.1 MGP_C57BL6NJ_G0009550.1 mouse_genomes_project X 113067024 113067094 - Mir361 miRNA miRNA MGP_C57BL6NJ_T0100795.1 MGP_C57BL6NJ_G0038841.1 mouse_genomes_project X 86954895 86955002 + Gm25006 snRNA snRNA MGP_C57BL6NJ_T0017230.1 MGP_C57BL6NJ_G0015275.1 mouse_genomes_project X 137595486 137597376 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098448.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162120674 162150512 + MGP_C57BL6NJ_P0098448 A830080D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0098449.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162129061 162192347 + MGP_C57BL6NJ_P0098449 A830080D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0098450.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162129207 162192334 + MGP_C57BL6NJ_P0098450 A830080D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0098451.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162139784 162150562 + MGP_C57BL6NJ_P0098451 A830080D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0098452.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162165780 162191468 + A830080D01Rik protein_coding processed_transcript MGP_C57BL6NJ_T0098453.1 MGP_C57BL6NJ_G0036711.1 mouse_genomes_project X 162166469 162174029 + A830080D01Rik protein_coding retained_intron MGP_C57BL6NJ_T0017349.1 MGP_C57BL6NJ_G0015394.1 mouse_genomes_project X 160151339 160151673 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097182.1 MGP_C57BL6NJ_G0036349.1 mouse_genomes_project X 72991902 72997113 + protein_coding retained_intron MGP_C57BL6NJ_T0017278.1 MGP_C57BL6NJ_G0015323.1 mouse_genomes_project X 144704215 144705245 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017171.1 MGP_C57BL6NJ_G0015216.1 mouse_genomes_project X 119727876 119728614 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017248.1 MGP_C57BL6NJ_G0015293.1 mouse_genomes_project X 140232127 140234776 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017083.1 MGP_C57BL6NJ_G0015128.1 mouse_genomes_project X 103144826 103145051 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096342.1 MGP_C57BL6NJ_G0036112.1 mouse_genomes_project X 16453112 16458485 + MGP_C57BL6NJ_P0096342 Ssxa1 protein_coding protein_coding MGP_C57BL6NJ_T0096343.1 MGP_C57BL6NJ_G0036112.1 mouse_genomes_project X 16455664 16458485 + MGP_C57BL6NJ_P0096343 Ssxa1 protein_coding protein_coding MGP_C57BL6NJ_T0017049.1 MGP_C57BL6NJ_G0015094.1 mouse_genomes_project X 99689173 99690311 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097657.1 MGP_C57BL6NJ_G0036486.1 mouse_genomes_project X 103725372 103846336 - MGP_C57BL6NJ_P0097657 C77370 protein_coding protein_coding MGP_C57BL6NJ_T0097658.1 MGP_C57BL6NJ_G0036486.1 mouse_genomes_project X 103725373 103846268 - MGP_C57BL6NJ_P0097658 C77370 protein_coding protein_coding MGP_C57BL6NJ_T0097659.1 MGP_C57BL6NJ_G0036486.1 mouse_genomes_project X 103731652 103846295 - MGP_C57BL6NJ_P0097659 C77370 protein_coding protein_coding MGP_C57BL6NJ_T0098205.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149181813 149224948 - MGP_C57BL6NJ_P0098205 Lrch2 protein_coding protein_coding MGP_C57BL6NJ_T0098206.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149181818 149267953 - MGP_C57BL6NJ_P0098206 Lrch2 protein_coding protein_coding MGP_C57BL6NJ_T0098207.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149181825 149209934 - Lrch2 protein_coding retained_intron MGP_C57BL6NJ_T0098208.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149181825 149267860 - MGP_C57BL6NJ_P0098208 Lrch2 protein_coding protein_coding MGP_C57BL6NJ_T0098209.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149184334 149231968 - MGP_C57BL6NJ_P0098209 Lrch2 protein_coding protein_coding MGP_C57BL6NJ_T0098210.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149184478 149267826 - MGP_C57BL6NJ_P0098210 Lrch2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098211.1 MGP_C57BL6NJ_G0036658.1 mouse_genomes_project X 149196415 149215239 - Lrch2 protein_coding processed_transcript MGP_C57BL6NJ_T0017356.1 MGP_C57BL6NJ_G0015401.1 mouse_genomes_project X 161402918 161403803 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017255.1 MGP_C57BL6NJ_G0015300.1 mouse_genomes_project X 141656525 141657506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016780.1 MGP_C57BL6NJ_G0014825.1 mouse_genomes_project X 43734215 43735768 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017092.1 MGP_C57BL6NJ_G0015137.1 mouse_genomes_project X 103644260 103644532 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017345.1 MGP_C57BL6NJ_G0015390.1 mouse_genomes_project X 160088315 160088450 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099281.1 MGP_C57BL6NJ_G0037345.1 mouse_genomes_project X 95450407 95450543 - Gm24718 scaRNA scaRNA MGP_C57BL6NJ_T0016973.1 MGP_C57BL6NJ_G0015018.1 mouse_genomes_project X 87174102 87174413 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096326.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16264063 16284333 - Uxt protein_coding processed_transcript MGP_C57BL6NJ_T0096327.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16274003 16284359 - MGP_C57BL6NJ_P0096327 Uxt protein_coding protein_coding MGP_C57BL6NJ_T0096328.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16274261 16284307 - MGP_C57BL6NJ_P0096328 Uxt protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096329.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16274264 16284257 - Uxt protein_coding retained_intron MGP_C57BL6NJ_T0096330.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16274270 16284342 - Uxt protein_coding processed_transcript MGP_C57BL6NJ_T0096331.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16281403 16284328 - Uxt protein_coding retained_intron MGP_C57BL6NJ_T0096332.1 MGP_C57BL6NJ_G0036108.1 mouse_genomes_project X 16283758 16284316 - Uxt protein_coding processed_transcript MGP_C57BL6NJ_T0011448.1 MGP_C57BL6NJ_G0009533.1 mouse_genomes_project X 77081833 77081925 - Gm23556 miRNA miRNA MGP_C57BL6NJ_T0017205.1 MGP_C57BL6NJ_G0015250.1 mouse_genomes_project X 132021548 132022858 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097218.1 MGP_C57BL6NJ_G0036356.1 mouse_genomes_project X 73505790 73519853 + MGP_C57BL6NJ_P0097218 Fundc2 protein_coding protein_coding MGP_C57BL6NJ_T0097219.1 MGP_C57BL6NJ_G0036356.1 mouse_genomes_project X 73505815 73510869 + Fundc2 protein_coding retained_intron MGP_C57BL6NJ_T0097220.1 MGP_C57BL6NJ_G0036356.1 mouse_genomes_project X 73510495 73517722 + Fundc2 protein_coding processed_transcript MGP_C57BL6NJ_T0017128.1 MGP_C57BL6NJ_G0015173.1 mouse_genomes_project X 111740048 111740693 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099203.1 MGP_C57BL6NJ_G0037267.1 mouse_genomes_project X 154343619 154343730 + n-R5s15 rRNA rRNA MGP_C57BL6NJ_T0096191.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7020508 7065946 - MGP_C57BL6NJ_P0096191 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096192.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7020508 7065946 - MGP_C57BL6NJ_P0096192 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096193.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7020508 7065946 - MGP_C57BL6NJ_P0096193 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096194.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7020508 7065946 - MGP_C57BL6NJ_P0096194 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096195.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7020511 7150979 - MGP_C57BL6NJ_P0096195 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096196.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7044385 7118525 - MGP_C57BL6NJ_P0096196 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0096197.1 MGP_C57BL6NJ_G0036066.1 mouse_genomes_project X 7044475 7118475 - MGP_C57BL6NJ_P0096197 Bcor protein_coding protein_coding MGP_C57BL6NJ_T0098164.1 MGP_C57BL6NJ_G0036647.1 mouse_genomes_project X 145312771 145337917 - MGP_C57BL6NJ_P0098164 Capn6 protein_coding protein_coding MGP_C57BL6NJ_T0098165.1 MGP_C57BL6NJ_G0036647.1 mouse_genomes_project X 145326564 145337835 - Capn6 protein_coding retained_intron MGP_C57BL6NJ_T0017220.1 MGP_C57BL6NJ_G0015265.1 mouse_genomes_project X 135992248 135992881 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100789.1 MGP_C57BL6NJ_G0038835.1 mouse_genomes_project X 70383687 70383794 + Gm23461 snRNA snRNA MGP_C57BL6NJ_T0016674.1 MGP_C57BL6NJ_G0014719.1 mouse_genomes_project X 5892315 5892808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005773.1 MGP_C57BL6NJ_G0004859.1 mouse_genomes_project X 157987655 157988228 + Gm15156 antisense antisense MGP_C57BL6NJ_T0096270.1 MGP_C57BL6NJ_G0036095.1 mouse_genomes_project X 15644180 15683221 + MGP_C57BL6NJ_P0096270 Rp2 protein_coding protein_coding MGP_C57BL6NJ_T0096271.1 MGP_C57BL6NJ_G0036095.1 mouse_genomes_project X 15644180 15683217 + MGP_C57BL6NJ_P0096271 Rp2 protein_coding protein_coding MGP_C57BL6NJ_T0096272.1 MGP_C57BL6NJ_G0036095.1 mouse_genomes_project X 15644258 15683217 + MGP_C57BL6NJ_P0096272 Rp2 protein_coding protein_coding MGP_C57BL6NJ_T0096273.1 MGP_C57BL6NJ_G0036095.1 mouse_genomes_project X 15644274 15689736 + MGP_C57BL6NJ_P0096273 Rp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096274.1 MGP_C57BL6NJ_G0036095.1 mouse_genomes_project X 15644318 15689713 + MGP_C57BL6NJ_P0096274 Rp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096827.1 MGP_C57BL6NJ_G0036284.1 mouse_genomes_project X 69256618 69262269 + MGP_C57BL6NJ_P0096827 Hmgb3 protein_coding protein_coding MGP_C57BL6NJ_T0096828.1 MGP_C57BL6NJ_G0036284.1 mouse_genomes_project X 69259121 69261562 + MGP_C57BL6NJ_P0096828 Hmgb3 protein_coding protein_coding MGP_C57BL6NJ_T0096829.1 MGP_C57BL6NJ_G0036284.1 mouse_genomes_project X 69259958 69262062 + Hmgb3 protein_coding retained_intron MGP_C57BL6NJ_T0096659.1 MGP_C57BL6NJ_G0036227.1 mouse_genomes_project X 50179659 50193425 + MGP_C57BL6NJ_P0096659 4930502E18Rik protein_coding protein_coding MGP_C57BL6NJ_T0097435.1 MGP_C57BL6NJ_G0036428.1 mouse_genomes_project X 97458293 97643128 + MGP_C57BL6NJ_P0097435 Ar protein_coding protein_coding MGP_C57BL6NJ_T0019067.1 MGP_C57BL6NJ_G0016161.1 mouse_genomes_project X 2090015 2099284 - 2010204K13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019068.1 MGP_C57BL6NJ_G0016161.1 mouse_genomes_project X 2090285 2091024 - 2010204K13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019069.1 MGP_C57BL6NJ_G0016161.1 mouse_genomes_project X 2090301 2101187 - 2010204K13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019070.1 MGP_C57BL6NJ_G0016161.1 mouse_genomes_project X 2090304 2123566 - 2010204K13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017318.1 MGP_C57BL6NJ_G0015363.1 mouse_genomes_project X 153775010 153775397 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097072.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72230820 72240946 - MGP_C57BL6NJ_P0097072 Dnase1l1 protein_coding protein_coding MGP_C57BL6NJ_T0097073.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72230821 72241547 - MGP_C57BL6NJ_P0097073 Dnase1l1 protein_coding protein_coding MGP_C57BL6NJ_T0097074.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72230922 72240808 - MGP_C57BL6NJ_P0097074 Dnase1l1 protein_coding protein_coding MGP_C57BL6NJ_T0097075.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72231576 72240885 - MGP_C57BL6NJ_P0097075 Dnase1l1 protein_coding protein_coding MGP_C57BL6NJ_T0097076.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72231971 72234450 - Dnase1l1 protein_coding retained_intron MGP_C57BL6NJ_T0097077.1 MGP_C57BL6NJ_G0036333.1 mouse_genomes_project X 72234388 72240836 - Dnase1l1 protein_coding retained_intron MGP_C57BL6NJ_T0097971.1 MGP_C57BL6NJ_G0036582.1 mouse_genomes_project X 137059658 137064886 + MGP_C57BL6NJ_P0097971 Bhlhb9 protein_coding protein_coding MGP_C57BL6NJ_T0097972.1 MGP_C57BL6NJ_G0036582.1 mouse_genomes_project X 137059660 137063134 + MGP_C57BL6NJ_P0097972 Bhlhb9 protein_coding protein_coding MGP_C57BL6NJ_T0097973.1 MGP_C57BL6NJ_G0036582.1 mouse_genomes_project X 137059660 137064889 + MGP_C57BL6NJ_P0097973 Bhlhb9 protein_coding protein_coding MGP_C57BL6NJ_T0097974.1 MGP_C57BL6NJ_G0036582.1 mouse_genomes_project X 137059790 137061278 + Bhlhb9 protein_coding retained_intron MGP_C57BL6NJ_T0011485.1 MGP_C57BL6NJ_G0009570.1 mouse_genomes_project X 152440578 152440639 - Mir3620 miRNA miRNA MGP_C57BL6NJ_T0011446.1 MGP_C57BL6NJ_G0009531.1 mouse_genomes_project X 72231630 72231709 - Mir7091 miRNA miRNA MGP_C57BL6NJ_T0011381.1 MGP_C57BL6NJ_G0009466.1 mouse_genomes_project X 7897115 7897197 - Gm25063 miRNA miRNA MGP_C57BL6NJ_T0016987.1 MGP_C57BL6NJ_G0015032.1 mouse_genomes_project X 88629252 88632899 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016874.1 MGP_C57BL6NJ_G0014919.1 mouse_genomes_project X 65855604 65856217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017126.1 MGP_C57BL6NJ_G0015171.1 mouse_genomes_project X 110509991 110511135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096246.1 MGP_C57BL6NJ_G0036085.1 mouse_genomes_project X 11856484 11973108 - MGP_C57BL6NJ_P0096246 Maob protein_coding protein_coding MGP_C57BL6NJ_T0096247.1 MGP_C57BL6NJ_G0036085.1 mouse_genomes_project X 11857241 11973017 - MGP_C57BL6NJ_P0096247 Maob protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096248.1 MGP_C57BL6NJ_G0036085.1 mouse_genomes_project X 11867590 11973017 - MGP_C57BL6NJ_P0096248 Maob protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096249.1 MGP_C57BL6NJ_G0036085.1 mouse_genomes_project X 11895296 11973062 - MGP_C57BL6NJ_P0096249 Maob protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097792.1 MGP_C57BL6NJ_G0036527.1 mouse_genomes_project X 112261626 112327458 + MGP_C57BL6NJ_P0097792 Apool protein_coding protein_coding MGP_C57BL6NJ_T0097793.1 MGP_C57BL6NJ_G0036527.1 mouse_genomes_project X 112261640 112299361 + Apool protein_coding retained_intron MGP_C57BL6NJ_T0097794.1 MGP_C57BL6NJ_G0036527.1 mouse_genomes_project X 112261658 112327133 + MGP_C57BL6NJ_P0097794 Apool protein_coding protein_coding MGP_C57BL6NJ_T0098297.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153793943 153795400 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098298.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153794019 153797648 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098299.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153794450 153799997 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098300.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796379 153868336 + MGP_C57BL6NJ_P0098300 Huwe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098301.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796397 153799997 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098302.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796452 153931339 + MGP_C57BL6NJ_P0098302 Huwe1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098303.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796463 153847539 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098304.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796463 153931337 + MGP_C57BL6NJ_P0098304 Huwe1 protein_coding protein_coding MGP_C57BL6NJ_T0098305.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796483 153854912 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098306.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796483 153868851 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098307.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796794 153829614 + MGP_C57BL6NJ_P0098307 Huwe1 protein_coding protein_coding MGP_C57BL6NJ_T0098308.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796798 153841927 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098309.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796798 153867517 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098310.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153796798 153834446 + MGP_C57BL6NJ_P0098310 Huwe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098311.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153829585 153931337 + MGP_C57BL6NJ_P0098311 Huwe1 protein_coding protein_coding MGP_C57BL6NJ_T0098312.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153854532 153886454 + MGP_C57BL6NJ_P0098312 Huwe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098313.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153859880 153869205 + MGP_C57BL6NJ_P0098313 Huwe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098314.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153877888 153878603 + Huwe1 protein_coding processed_transcript MGP_C57BL6NJ_T0098315.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153900296 153905220 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098316.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153904147 153905692 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098317.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153904147 153905495 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098318.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153916583 153917914 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098319.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153916644 153919035 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0098320.1 MGP_C57BL6NJ_G0036671.1 mouse_genomes_project X 153919559 153923050 + Huwe1 protein_coding retained_intron MGP_C57BL6NJ_T0097239.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 73944035 74040341 - MGP_C57BL6NJ_P0097239 Pls3 protein_coding protein_coding MGP_C57BL6NJ_T0097240.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 73944044 74039733 - MGP_C57BL6NJ_P0097240 Pls3 protein_coding protein_coding MGP_C57BL6NJ_T0097241.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 73944044 73986288 - MGP_C57BL6NJ_P0097241 Pls3 protein_coding protein_coding MGP_C57BL6NJ_T0097242.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 73944049 74003610 - MGP_C57BL6NJ_P0097242 Pls3 protein_coding protein_coding MGP_C57BL6NJ_T0097243.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 73945152 74003732 - MGP_C57BL6NJ_P0097243 Pls3 protein_coding protein_coding MGP_C57BL6NJ_T0097244.1 MGP_C57BL6NJ_G0036362.1 mouse_genomes_project X 74037071 74040258 - Pls3 protein_coding processed_transcript MGP_C57BL6NJ_T0096099.1 MGP_C57BL6NJ_G0036036.1 mouse_genomes_project X 2788140 2801723 - MGP_C57BL6NJ_P0096099 Suv39h1 protein_coding protein_coding MGP_C57BL6NJ_T0096100.1 MGP_C57BL6NJ_G0036036.1 mouse_genomes_project X 2788395 2801584 - Suv39h1 protein_coding retained_intron MGP_C57BL6NJ_T0096101.1 MGP_C57BL6NJ_G0036036.1 mouse_genomes_project X 2788404 2801221 - MGP_C57BL6NJ_P0096101 Suv39h1 protein_coding protein_coding MGP_C57BL6NJ_T0096102.1 MGP_C57BL6NJ_G0036036.1 mouse_genomes_project X 2794378 2801692 - MGP_C57BL6NJ_P0096102 Suv39h1 protein_coding protein_coding MGP_C57BL6NJ_T0096103.1 MGP_C57BL6NJ_G0036036.1 mouse_genomes_project X 2797398 2801276 - Suv39h1 protein_coding retained_intron MGP_C57BL6NJ_T0098133.1 MGP_C57BL6NJ_G0036636.1 mouse_genomes_project X 143235948 143250214 - MGP_C57BL6NJ_P0098133 Irs4 protein_coding protein_coding MGP_C57BL6NJ_T0009622.1 MGP_C57BL6NJ_G0007716.1 mouse_genomes_project X 153139992 153142110 + Gm15138 lincRNA lincRNA MGP_C57BL6NJ_T0017084.1 MGP_C57BL6NJ_G0015129.1 mouse_genomes_project X 103219527 103220093 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017364.1 MGP_C57BL6NJ_G0015409.1 mouse_genomes_project X 162911253 162911516 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011391.1 MGP_C57BL6NJ_G0009476.1 mouse_genomes_project X 34525402 34525468 - Gm25642 miRNA miRNA MGP_C57BL6NJ_T0098189.1 MGP_C57BL6NJ_G0036652.1 mouse_genomes_project X 146269499 146717568 + MGP_C57BL6NJ_P0098189 Zcchc16 protein_coding protein_coding MGP_C57BL6NJ_T0098190.1 MGP_C57BL6NJ_G0036652.1 mouse_genomes_project X 146714657 146716415 + MGP_C57BL6NJ_P0098190 Zcchc16 protein_coding protein_coding MGP_C57BL6NJ_T0016852.1 MGP_C57BL6NJ_G0014897.1 mouse_genomes_project X 60402291 60404132 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016961.1 MGP_C57BL6NJ_G0015006.1 mouse_genomes_project X 84304419 84305005 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097338.1 MGP_C57BL6NJ_G0036404.1 mouse_genomes_project X 92884216 92959713 - MGP_C57BL6NJ_P0097338 Pdk3 protein_coding protein_coding MGP_C57BL6NJ_T0097339.1 MGP_C57BL6NJ_G0036404.1 mouse_genomes_project X 92884705 92893329 - Pdk3 protein_coding processed_transcript MGP_C57BL6NJ_T0097340.1 MGP_C57BL6NJ_G0036404.1 mouse_genomes_project X 92905929 92913105 - Pdk3 protein_coding processed_transcript MGP_C57BL6NJ_T0096577.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44817753 44825377 + Slc25a14 protein_coding processed_transcript MGP_C57BL6NJ_T0096578.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44817918 44861603 + MGP_C57BL6NJ_P0096578 Slc25a14 protein_coding protein_coding MGP_C57BL6NJ_T0096579.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44817918 44861603 + MGP_C57BL6NJ_P0096579 Slc25a14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096580.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44817918 44861603 + MGP_C57BL6NJ_P0096580 Slc25a14 protein_coding protein_coding MGP_C57BL6NJ_T0096581.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44818089 44850473 + Slc25a14 protein_coding processed_transcript MGP_C57BL6NJ_T0096582.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44818105 44861603 + MGP_C57BL6NJ_P0096582 Slc25a14 protein_coding protein_coding MGP_C57BL6NJ_T0096583.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44818160 44831656 + Slc25a14 protein_coding retained_intron MGP_C57BL6NJ_T0096584.1 MGP_C57BL6NJ_G0036194.1 mouse_genomes_project X 44818302 44861601 + MGP_C57BL6NJ_P0096584 Slc25a14 protein_coding protein_coding MGP_C57BL6NJ_T0017225.1 MGP_C57BL6NJ_G0015270.1 mouse_genomes_project X 137539038 137539679 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100811.1 MGP_C57BL6NJ_G0038857.1 mouse_genomes_project X 113322961 113323087 - Gm24831 snRNA snRNA MGP_C57BL6NJ_T0009574.1 MGP_C57BL6NJ_G0007684.1 mouse_genomes_project X 59530505 59538581 - lincRNA lincRNA MGP_C57BL6NJ_T0009575.1 MGP_C57BL6NJ_G0007684.1 mouse_genomes_project X 59530505 59564170 - lincRNA lincRNA MGP_C57BL6NJ_T0011451.1 MGP_C57BL6NJ_G0009536.1 mouse_genomes_project X 93575040 93575150 - Gm44477 miRNA miRNA MGP_C57BL6NJ_T0017306.1 MGP_C57BL6NJ_G0015351.1 mouse_genomes_project X 152255445 152255649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019145.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138048330 138064658 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019146.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138048352 138066357 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019147.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138048364 138051092 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019148.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138048394 138064636 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019149.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138049482 138109733 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019150.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138049903 138064673 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0019151.1 MGP_C57BL6NJ_G0016187.1 mouse_genomes_project X 138072083 138109742 + BC065397 processed_transcript processed_transcript MGP_C57BL6NJ_T0099282.1 MGP_C57BL6NJ_G0037346.1 mouse_genomes_project X 115478863 115479244 + Gm27414 scaRNA scaRNA MGP_C57BL6NJ_T0096747.1 MGP_C57BL6NJ_G0036257.1 mouse_genomes_project X 57801636 57803701 - MGP_C57BL6NJ_P0096747 Sox3 protein_coding protein_coding MGP_C57BL6NJ_T0016837.1 MGP_C57BL6NJ_G0014882.1 mouse_genomes_project X 57999496 58000649 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017214.1 MGP_C57BL6NJ_G0015259.1 mouse_genomes_project X 134404490 134405226 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009619.1 MGP_C57BL6NJ_G0007714.1 mouse_genomes_project X 152194753 152206397 - lincRNA lincRNA MGP_C57BL6NJ_T0009620.1 MGP_C57BL6NJ_G0007714.1 mouse_genomes_project X 152195103 152195517 - lincRNA lincRNA MGP_C57BL6NJ_T0097312.1 MGP_C57BL6NJ_G0036388.1 mouse_genomes_project X 84640026 84643129 + MGP_C57BL6NJ_P0097312 Samt3 protein_coding protein_coding MGP_C57BL6NJ_T0017133.1 MGP_C57BL6NJ_G0015178.1 mouse_genomes_project X 112419220 112424503 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016681.1 MGP_C57BL6NJ_G0014726.1 mouse_genomes_project X 7169603 7169953 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098079.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141376059 141427020 - MGP_C57BL6NJ_P0098079 Morc4 protein_coding protein_coding MGP_C57BL6NJ_T0098080.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141376331 141427043 - MGP_C57BL6NJ_P0098080 Morc4 protein_coding protein_coding MGP_C57BL6NJ_T0098081.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141377102 141411961 - MGP_C57BL6NJ_P0098081 Morc4 protein_coding protein_coding MGP_C57BL6NJ_T0098082.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141378658 141390531 - Morc4 protein_coding retained_intron MGP_C57BL6NJ_T0098083.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141390906 141409010 - MGP_C57BL6NJ_P0098083 Morc4 protein_coding protein_coding MGP_C57BL6NJ_T0098084.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141410418 141426991 - Morc4 protein_coding retained_intron MGP_C57BL6NJ_T0098085.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141410425 141426988 - Morc4 protein_coding processed_transcript MGP_C57BL6NJ_T0098086.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141412832 141426776 - Morc4 protein_coding retained_intron MGP_C57BL6NJ_T0098087.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141412866 141426739 - MGP_C57BL6NJ_P0098087 Morc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098088.1 MGP_C57BL6NJ_G0036622.1 mouse_genomes_project X 141412980 141426565 - MGP_C57BL6NJ_P0098088 Morc4 protein_coding protein_coding MGP_C57BL6NJ_T0097836.1 MGP_C57BL6NJ_G0036543.1 mouse_genomes_project X 122883787 122886624 - MGP_C57BL6NJ_P0097836 Nap1l3 protein_coding protein_coding MGP_C57BL6NJ_T0097365.1 MGP_C57BL6NJ_G0036409.1 mouse_genomes_project X 93531950 93544949 - MGP_C57BL6NJ_P0097365 Fam90a1b protein_coding protein_coding MGP_C57BL6NJ_T0097366.1 MGP_C57BL6NJ_G0036409.1 mouse_genomes_project X 93532769 93543945 - MGP_C57BL6NJ_P0097366 Fam90a1b protein_coding protein_coding MGP_C57BL6NJ_T0097367.1 MGP_C57BL6NJ_G0036409.1 mouse_genomes_project X 93534053 93544224 - MGP_C57BL6NJ_P0097367 Fam90a1b protein_coding protein_coding MGP_C57BL6NJ_T0103616.1 MGP_C57BL6NJ_G0041408.1 mouse_genomes_project X 156488683 156489166 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097323.1 MGP_C57BL6NJ_G0036396.1 mouse_genomes_project X 90960937 90961972 - MGP_C57BL6NJ_P0097323 Gm8914 protein_coding protein_coding MGP_C57BL6NJ_T0100831.1 MGP_C57BL6NJ_G0038877.1 mouse_genomes_project X 165929519 165929626 - Gm22746 snRNA snRNA MGP_C57BL6NJ_T0016903.1 MGP_C57BL6NJ_G0014948.1 mouse_genomes_project X 72494040 72494484 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103588.1 MGP_C57BL6NJ_G0041380.1 mouse_genomes_project X 74764194 74764824 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096787.1 MGP_C57BL6NJ_G0036275.1 mouse_genomes_project X 67561879 67562558 + MGP_C57BL6NJ_P0096787 Gm6812 protein_coding protein_coding MGP_C57BL6NJ_T0102097.1 MGP_C57BL6NJ_G0040143.1 mouse_genomes_project X 144012722 144012848 - Gm25915 snoRNA snoRNA MGP_C57BL6NJ_T0009599.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103179634 103250761 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0009600.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103181624 103240378 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0009601.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103188295 103250670 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0009602.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103188295 103240290 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0009603.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103229361 103250761 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0009604.1 MGP_C57BL6NJ_G0007702.1 mouse_genomes_project X 103229414 103249507 - Ftx lincRNA lincRNA MGP_C57BL6NJ_T0096986.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847400 71856906 - MGP_C57BL6NJ_P0096986 Renbp protein_coding protein_coding MGP_C57BL6NJ_T0096987.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847400 71856848 - MGP_C57BL6NJ_P0096987 Renbp protein_coding protein_coding MGP_C57BL6NJ_T0096988.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847401 71852605 - Renbp protein_coding retained_intron MGP_C57BL6NJ_T0096989.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847402 71856873 - Renbp protein_coding retained_intron MGP_C57BL6NJ_T0096990.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847418 71856812 - MGP_C57BL6NJ_P0096990 Renbp protein_coding protein_coding MGP_C57BL6NJ_T0096991.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71847857 71856881 - MGP_C57BL6NJ_P0096991 Renbp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096992.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71851466 71855185 - Renbp protein_coding processed_transcript MGP_C57BL6NJ_T0096993.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71852470 71854133 - Renbp protein_coding retained_intron MGP_C57BL6NJ_T0096994.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71854291 71856797 - Renbp protein_coding retained_intron MGP_C57BL6NJ_T0096995.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71855197 71856801 - MGP_C57BL6NJ_P0096995 Renbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096996.1 MGP_C57BL6NJ_G0036323.1 mouse_genomes_project X 71855644 71856808 - Renbp protein_coding retained_intron MGP_C57BL6NJ_T0096721.1 MGP_C57BL6NJ_G0036249.1 mouse_genomes_project X 54223386 54230480 - MGP_C57BL6NJ_P0096721 Gpr101 protein_coding protein_coding MGP_C57BL6NJ_T0017156.1 MGP_C57BL6NJ_G0015201.1 mouse_genomes_project X 116314090 116314425 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017298.1 MGP_C57BL6NJ_G0015343.1 mouse_genomes_project X 147717194 147718278 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016731.1 MGP_C57BL6NJ_G0014776.1 mouse_genomes_project X 19292126 19293342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017094.1 MGP_C57BL6NJ_G0015139.1 mouse_genomes_project X 104627353 104627839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096280.1 MGP_C57BL6NJ_G0036098.1 mouse_genomes_project X 15899582 15908757 - MGP_C57BL6NJ_P0096280 Ndufb11 protein_coding protein_coding MGP_C57BL6NJ_T0102056.1 MGP_C57BL6NJ_G0040102.1 mouse_genomes_project X 2234532 2234665 - Gm23082 snoRNA snoRNA MGP_C57BL6NJ_T0095946.1 MGP_C57BL6NJ_G0036002.1 mouse_genomes_project X 986031 992646 - MGP_C57BL6NJ_P0095946 Bmp15 protein_coding protein_coding MGP_C57BL6NJ_T0096812.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69055169 69078965 + MGP_C57BL6NJ_P0096812 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096813.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69055169 69109409 + MGP_C57BL6NJ_P0096813 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096814.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69055346 69084523 + MGP_C57BL6NJ_P0096814 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096815.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69060226 69078943 + MGP_C57BL6NJ_P0096815 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096816.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69060226 69078943 + MGP_C57BL6NJ_P0096816 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096817.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69060226 69078943 + MGP_C57BL6NJ_P0096817 Mtmr1 protein_coding protein_coding MGP_C57BL6NJ_T0096818.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69081396 69082817 + Mtmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096819.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69081897 69083154 + Mtmr1 protein_coding retained_intron MGP_C57BL6NJ_T0096820.1 MGP_C57BL6NJ_G0036282.1 mouse_genomes_project X 69084217 69108877 + Mtmr1 protein_coding retained_intron MGP_C57BL6NJ_T0019154.1 MGP_C57BL6NJ_G0016189.1 mouse_genomes_project X 154408943 154460912 + 3010001F23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019155.1 MGP_C57BL6NJ_G0016189.1 mouse_genomes_project X 154409757 154426753 + 3010001F23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017226.1 MGP_C57BL6NJ_G0015271.1 mouse_genomes_project X 137543724 137544360 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102078.1 MGP_C57BL6NJ_G0040124.1 mouse_genomes_project X 92270603 92270686 + Gm24123 snoRNA snoRNA MGP_C57BL6NJ_T0096183.1 MGP_C57BL6NJ_G0036064.1 mouse_genomes_project X 5327993 5440992 + Tspan7 protein_coding retained_intron MGP_C57BL6NJ_T0096184.1 MGP_C57BL6NJ_G0036064.1 mouse_genomes_project X 5327993 5440992 + MGP_C57BL6NJ_P0096184 Tspan7 protein_coding protein_coding MGP_C57BL6NJ_T0096185.1 MGP_C57BL6NJ_G0036064.1 mouse_genomes_project X 5327993 5440992 + MGP_C57BL6NJ_P0096185 Tspan7 protein_coding protein_coding MGP_C57BL6NJ_T0096345.1 MGP_C57BL6NJ_G0036114.1 mouse_genomes_project X 16867859 16872480 + MGP_C57BL6NJ_P0096345 Agtr2 protein_coding protein_coding MGP_C57BL6NJ_T0096346.1 MGP_C57BL6NJ_G0036114.1 mouse_genomes_project X 16868037 16869619 + Agtr2 protein_coding processed_transcript MGP_C57BL6NJ_T0097370.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93734743 93741413 - MGP_C57BL6NJ_P0097370 Maged1 protein_coding protein_coding MGP_C57BL6NJ_T0097371.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93734745 93737105 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0097372.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93734745 93741260 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0097373.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93734745 93736834 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0097374.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93735351 93737154 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0097375.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93736944 93738096 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0097376.1 MGP_C57BL6NJ_G0036411.1 mouse_genomes_project X 93739763 93741273 - Maged1 protein_coding retained_intron MGP_C57BL6NJ_T0016843.1 MGP_C57BL6NJ_G0014888.1 mouse_genomes_project X 58803824 58804890 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097458.1 MGP_C57BL6NJ_G0036433.1 mouse_genomes_project X 98821896 98829009 - MGP_C57BL6NJ_P0097458 Pja1 protein_coding protein_coding MGP_C57BL6NJ_T0097459.1 MGP_C57BL6NJ_G0036433.1 mouse_genomes_project X 98821900 98826850 - MGP_C57BL6NJ_P0097459 Pja1 protein_coding protein_coding MGP_C57BL6NJ_T0097460.1 MGP_C57BL6NJ_G0036433.1 mouse_genomes_project X 98821930 98826898 - MGP_C57BL6NJ_P0097460 Pja1 protein_coding protein_coding MGP_C57BL6NJ_T0097461.1 MGP_C57BL6NJ_G0036433.1 mouse_genomes_project X 98822276 98826855 - MGP_C57BL6NJ_P0097461 Pja1 protein_coding protein_coding MGP_C57BL6NJ_T0097462.1 MGP_C57BL6NJ_G0036433.1 mouse_genomes_project X 98822308 98826835 - MGP_C57BL6NJ_P0097462 Pja1 protein_coding protein_coding MGP_C57BL6NJ_T0016697.1 MGP_C57BL6NJ_G0014742.1 mouse_genomes_project X 10640387 10640724 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096347.1 MGP_C57BL6NJ_G0036115.1 mouse_genomes_project X 17116319 17146704 + MGP_C57BL6NJ_P0096347 Slc6a14 protein_coding protein_coding MGP_C57BL6NJ_T0009569.1 MGP_C57BL6NJ_G0007682.1 mouse_genomes_project X 49442212 49443634 - Gm28730 lincRNA lincRNA MGP_C57BL6NJ_T0009570.1 MGP_C57BL6NJ_G0007682.1 mouse_genomes_project X 49442220 49443618 - Gm28730 lincRNA lincRNA MGP_C57BL6NJ_T0009571.1 MGP_C57BL6NJ_G0007682.1 mouse_genomes_project X 49442325 49444178 - Gm28730 lincRNA lincRNA MGP_C57BL6NJ_T0017379.1 MGP_C57BL6NJ_G0015424.1 mouse_genomes_project X 166055103 166055569 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096623.1 MGP_C57BL6NJ_G0036210.1 mouse_genomes_project X 47492482 47493044 - MGP_C57BL6NJ_P0096623 protein_coding protein_coding MGP_C57BL6NJ_T0016992.1 MGP_C57BL6NJ_G0015037.1 mouse_genomes_project X 90234992 90237869 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096322.1 MGP_C57BL6NJ_G0036106.1 mouse_genomes_project X 16247804 16253906 - MGP_C57BL6NJ_P0096322 Cfp protein_coding protein_coding MGP_C57BL6NJ_T0096323.1 MGP_C57BL6NJ_G0036106.1 mouse_genomes_project X 16248001 16249965 - Cfp protein_coding processed_transcript MGP_C57BL6NJ_T0096701.1 MGP_C57BL6NJ_G0036244.1 mouse_genomes_project X 53790861 53811630 + MGP_C57BL6NJ_P0096701 Vgll1 protein_coding protein_coding MGP_C57BL6NJ_T0096702.1 MGP_C57BL6NJ_G0036244.1 mouse_genomes_project X 53792068 53810619 + MGP_C57BL6NJ_P0096702 Vgll1 protein_coding protein_coding MGP_C57BL6NJ_T0096703.1 MGP_C57BL6NJ_G0036244.1 mouse_genomes_project X 53792130 53811630 + MGP_C57BL6NJ_P0096703 Vgll1 protein_coding protein_coding MGP_C57BL6NJ_T0096704.1 MGP_C57BL6NJ_G0036244.1 mouse_genomes_project X 53803248 53805755 + MGP_C57BL6NJ_P0096704 Vgll1 protein_coding protein_coding MGP_C57BL6NJ_T0097842.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565662 131021046 + Diaph2 protein_coding retained_intron MGP_C57BL6NJ_T0097843.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565662 131316377 + MGP_C57BL6NJ_P0097843 Diaph2 protein_coding protein_coding MGP_C57BL6NJ_T0097844.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565716 131175583 + Diaph2 protein_coding retained_intron MGP_C57BL6NJ_T0097845.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565725 131311755 + MGP_C57BL6NJ_P0097845 Diaph2 protein_coding protein_coding MGP_C57BL6NJ_T0097846.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565744 131175256 + Diaph2 protein_coding retained_intron MGP_C57BL6NJ_T0097847.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130565896 131316380 + MGP_C57BL6NJ_P0097847 Diaph2 protein_coding protein_coding MGP_C57BL6NJ_T0097848.1 MGP_C57BL6NJ_G0036549.1 mouse_genomes_project X 130796883 130868127 + Diaph2 protein_coding processed_transcript MGP_C57BL6NJ_T0012043.1 MGP_C57BL6NJ_G0010128.1 mouse_genomes_project X 139608296 139608555 - Gm24675 misc_RNA misc_RNA MGP_C57BL6NJ_T0017401.1 MGP_C57BL6NJ_G0015446.1 mouse_genomes_project X 171824828 171825228 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017324.1 MGP_C57BL6NJ_G0015369.1 mouse_genomes_project X 155601767 155602748 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011380.1 MGP_C57BL6NJ_G0009465.1 mouse_genomes_project X 2515500 2515621 + Mir1198 miRNA miRNA MGP_C57BL6NJ_T0017292.1 MGP_C57BL6NJ_G0015337.1 mouse_genomes_project X 147252126 147253074 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102061.1 MGP_C57BL6NJ_G0040107.1 mouse_genomes_project X 48161811 48161928 + Gm22539 snoRNA snoRNA MGP_C57BL6NJ_T0097946.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136707105 136728487 - MGP_C57BL6NJ_P0097946 Nxf7 protein_coding protein_coding MGP_C57BL6NJ_T0097947.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136707105 136718690 - MGP_C57BL6NJ_P0097947 Nxf7 protein_coding protein_coding MGP_C57BL6NJ_T0097948.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136707378 136723565 - MGP_C57BL6NJ_P0097948 Nxf7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097949.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136707378 136723565 - MGP_C57BL6NJ_P0097949 Nxf7 protein_coding protein_coding MGP_C57BL6NJ_T0097950.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136712121 136713875 - Nxf7 protein_coding retained_intron MGP_C57BL6NJ_T0097951.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136718152 136728468 - MGP_C57BL6NJ_P0097951 Nxf7 protein_coding protein_coding MGP_C57BL6NJ_T0097952.1 MGP_C57BL6NJ_G0036575.1 mouse_genomes_project X 136718335 136726417 - MGP_C57BL6NJ_P0097952 Nxf7 protein_coding protein_coding MGP_C57BL6NJ_T0016788.1 MGP_C57BL6NJ_G0014833.1 mouse_genomes_project X 46569793 46570674 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009581.1 MGP_C57BL6NJ_G0007690.1 mouse_genomes_project X 84414598 84416369 + Gm14762 lincRNA lincRNA MGP_C57BL6NJ_T0009582.1 MGP_C57BL6NJ_G0007690.1 mouse_genomes_project X 84415367 84423578 + Gm14762 lincRNA lincRNA MGP_C57BL6NJ_T0098166.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145366910 145466856 - MGP_C57BL6NJ_P0098166 Dcx protein_coding protein_coding MGP_C57BL6NJ_T0098167.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145372089 145466749 - MGP_C57BL6NJ_P0098167 Dcx protein_coding protein_coding MGP_C57BL6NJ_T0098168.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145373160 145466669 - MGP_C57BL6NJ_P0098168 Dcx protein_coding protein_coding MGP_C57BL6NJ_T0098169.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145374851 145466764 - MGP_C57BL6NJ_P0098169 Dcx protein_coding protein_coding MGP_C57BL6NJ_T0098170.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145380588 145466595 - Dcx protein_coding retained_intron MGP_C57BL6NJ_T0098171.1 MGP_C57BL6NJ_G0036648.1 mouse_genomes_project X 145385104 145466664 - Dcx protein_coding retained_intron MGP_C57BL6NJ_T0017266.1 MGP_C57BL6NJ_G0015311.1 mouse_genomes_project X 143378950 143379217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098377.1 MGP_C57BL6NJ_G0036690.1 mouse_genomes_project X 155939338 155957062 + MGP_C57BL6NJ_P0098377 2210013O21Rik protein_coding protein_coding MGP_C57BL6NJ_T0098378.1 MGP_C57BL6NJ_G0036690.1 mouse_genomes_project X 155939358 155957718 + MGP_C57BL6NJ_P0098378 2210013O21Rik protein_coding protein_coding MGP_C57BL6NJ_T0098379.1 MGP_C57BL6NJ_G0036690.1 mouse_genomes_project X 155939375 155944946 + MGP_C57BL6NJ_P0098379 2210013O21Rik protein_coding protein_coding MGP_C57BL6NJ_T0098380.1 MGP_C57BL6NJ_G0036690.1 mouse_genomes_project X 155939687 155956920 + 2210013O21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0096265.1 MGP_C57BL6NJ_G0036094.1 mouse_genomes_project X 15380508 15564943 - MGP_C57BL6NJ_P0096265 Slc9a7 protein_coding protein_coding MGP_C57BL6NJ_T0096266.1 MGP_C57BL6NJ_G0036094.1 mouse_genomes_project X 15380716 15564820 - MGP_C57BL6NJ_P0096266 Slc9a7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096267.1 MGP_C57BL6NJ_G0036094.1 mouse_genomes_project X 15394818 15564922 - Slc9a7 protein_coding retained_intron MGP_C57BL6NJ_T0096268.1 MGP_C57BL6NJ_G0036094.1 mouse_genomes_project X 15427196 15564906 - MGP_C57BL6NJ_P0096268 Slc9a7 protein_coding protein_coding MGP_C57BL6NJ_T0096269.1 MGP_C57BL6NJ_G0036094.1 mouse_genomes_project X 15439112 15564943 - Slc9a7 protein_coding retained_intron MGP_C57BL6NJ_T0011444.1 MGP_C57BL6NJ_G0009529.1 mouse_genomes_project X 71960466 71960537 - Mir5132 miRNA miRNA MGP_C57BL6NJ_T0098604.1 MGP_C57BL6NJ_G0036748.1 mouse_genomes_project X 168015725 168225454 - MGP_C57BL6NJ_P0098604 Glra2 protein_coding protein_coding MGP_C57BL6NJ_T0011475.1 MGP_C57BL6NJ_G0009560.1 mouse_genomes_project X 144491954 144492049 - Gm44351 miRNA miRNA MGP_C57BL6NJ_T0098363.1 MGP_C57BL6NJ_G0036682.1 mouse_genomes_project X 155163369 155166317 + MGP_C57BL6NJ_P0098363 Usp51 protein_coding protein_coding MGP_C57BL6NJ_T0096845.1 MGP_C57BL6NJ_G0036291.1 mouse_genomes_project X 69963577 69964525 + MGP_C57BL6NJ_P0096845 Magea4 protein_coding protein_coding MGP_C57BL6NJ_T0096874.1 MGP_C57BL6NJ_G0036306.1 mouse_genomes_project X 71323539 71346290 - MGP_C57BL6NJ_P0096874 Haus7 protein_coding protein_coding MGP_C57BL6NJ_T0096875.1 MGP_C57BL6NJ_G0036306.1 mouse_genomes_project X 71323539 71346290 - MGP_C57BL6NJ_P0096875 Haus7 protein_coding protein_coding MGP_C57BL6NJ_T0096876.1 MGP_C57BL6NJ_G0036306.1 mouse_genomes_project X 71323541 71333439 - Haus7 protein_coding processed_transcript MGP_C57BL6NJ_T0096465.1 MGP_C57BL6NJ_G0036168.1 mouse_genomes_project X 34377736 34382039 - MGP_C57BL6NJ_P0096465 C1galt1c1 protein_coding protein_coding MGP_C57BL6NJ_T0098014.1 MGP_C57BL6NJ_G0036599.1 mouse_genomes_project X 138131566 138150371 + MGP_C57BL6NJ_P0098014 Plp1 protein_coding protein_coding MGP_C57BL6NJ_T0098015.1 MGP_C57BL6NJ_G0036599.1 mouse_genomes_project X 138131685 138147030 + MGP_C57BL6NJ_P0098015 Plp1 protein_coding protein_coding MGP_C57BL6NJ_T0098016.1 MGP_C57BL6NJ_G0036599.1 mouse_genomes_project X 138140681 138142112 + Plp1 protein_coding retained_intron MGP_C57BL6NJ_T0098017.1 MGP_C57BL6NJ_G0036599.1 mouse_genomes_project X 138142770 138144012 + Plp1 protein_coding retained_intron MGP_C57BL6NJ_T0011404.1 MGP_C57BL6NJ_G0009489.1 mouse_genomes_project X 49101315 49101380 - Mir106a miRNA miRNA MGP_C57BL6NJ_T0017032.1 MGP_C57BL6NJ_G0015077.1 mouse_genomes_project X 95662754 95663732 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096629.1 MGP_C57BL6NJ_G0036212.1 mouse_genomes_project X 48051775 48101672 - MGP_C57BL6NJ_P0096629 Usp26 protein_coding protein_coding MGP_C57BL6NJ_T0096630.1 MGP_C57BL6NJ_G0036212.1 mouse_genomes_project X 48051775 48101583 - MGP_C57BL6NJ_P0096630 Usp26 protein_coding protein_coding MGP_C57BL6NJ_T0097478.1 MGP_C57BL6NJ_G0036438.1 mouse_genomes_project X 99858246 99881525 + MGP_C57BL6NJ_P0097478 Igbp1 protein_coding protein_coding MGP_C57BL6NJ_T0097479.1 MGP_C57BL6NJ_G0036438.1 mouse_genomes_project X 99858310 99863353 + Igbp1 protein_coding retained_intron MGP_C57BL6NJ_T0017157.1 MGP_C57BL6NJ_G0015202.1 mouse_genomes_project X 117028485 117028788 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016809.1 MGP_C57BL6NJ_G0014854.1 mouse_genomes_project X 52416068 52416635 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016998.1 MGP_C57BL6NJ_G0015043.1 mouse_genomes_project X 90585956 90587103 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096854.1 MGP_C57BL6NJ_G0036296.1 mouse_genomes_project X 70698189 70703064 - MGP_C57BL6NJ_P0096854 Cetn2 protein_coding protein_coding MGP_C57BL6NJ_T0096855.1 MGP_C57BL6NJ_G0036296.1 mouse_genomes_project X 70698361 70701509 - MGP_C57BL6NJ_P0096855 Cetn2 protein_coding protein_coding MGP_C57BL6NJ_T0096856.1 MGP_C57BL6NJ_G0036296.1 mouse_genomes_project X 70698361 70702646 - MGP_C57BL6NJ_P0096856 Cetn2 protein_coding protein_coding MGP_C57BL6NJ_T0096857.1 MGP_C57BL6NJ_G0036296.1 mouse_genomes_project X 70699565 70702937 - MGP_C57BL6NJ_P0096857 Cetn2 protein_coding protein_coding MGP_C57BL6NJ_T0016826.1 MGP_C57BL6NJ_G0014871.1 mouse_genomes_project X 56686983 56688040 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096348.1 MGP_C57BL6NJ_G0036116.1 mouse_genomes_project X 17147964 17149622 - MGP_C57BL6NJ_P0096348 Gm28269 protein_coding protein_coding MGP_C57BL6NJ_T0019075.1 MGP_C57BL6NJ_G0016165.1 mouse_genomes_project X 8086518 8089738 + 5730405O15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019076.1 MGP_C57BL6NJ_G0016165.1 mouse_genomes_project X 8086554 8089825 + 5730405O15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019111.1 MGP_C57BL6NJ_G0016178.1 mouse_genomes_project X 101772953 101885132 + Gm14858 processed_transcript processed_transcript MGP_C57BL6NJ_T0019112.1 MGP_C57BL6NJ_G0016178.1 mouse_genomes_project X 101773082 101778150 + Gm14858 processed_transcript processed_transcript MGP_C57BL6NJ_T0097716.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106137307 106227381 - protein_coding retained_intron MGP_C57BL6NJ_T0097717.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106206547 106299699 - MGP_C57BL6NJ_P0097717 protein_coding protein_coding MGP_C57BL6NJ_T0097718.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106214514 106225693 - protein_coding retained_intron MGP_C57BL6NJ_T0097719.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106241567 106299447 - MGP_C57BL6NJ_P0097719 protein_coding protein_coding MGP_C57BL6NJ_T0097720.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106286284 106299322 - MGP_C57BL6NJ_P0097720 protein_coding protein_coding MGP_C57BL6NJ_T0097721.1 MGP_C57BL6NJ_G0036502.1 mouse_genomes_project X 106286296 106299826 - MGP_C57BL6NJ_P0097721 protein_coding protein_coding MGP_C57BL6NJ_T0097983.1 MGP_C57BL6NJ_G0036587.1 mouse_genomes_project X 137408549 137412618 - MGP_C57BL6NJ_P0097983 Tceal5 protein_coding protein_coding MGP_C57BL6NJ_T0097984.1 MGP_C57BL6NJ_G0036587.1 mouse_genomes_project X 137410359 137412379 - MGP_C57BL6NJ_P0097984 Tceal5 protein_coding protein_coding MGP_C57BL6NJ_T0097985.1 MGP_C57BL6NJ_G0036587.1 mouse_genomes_project X 137410391 137412474 - MGP_C57BL6NJ_P0097985 Tceal5 protein_coding protein_coding MGP_C57BL6NJ_T0017398.1 MGP_C57BL6NJ_G0015443.1 mouse_genomes_project X 171108234 171108703 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097939.1 MGP_C57BL6NJ_G0036573.1 mouse_genomes_project X 136031440 136044778 - Nxf2 protein_coding retained_intron MGP_C57BL6NJ_T0097940.1 MGP_C57BL6NJ_G0036573.1 mouse_genomes_project X 136031442 136054380 - MGP_C57BL6NJ_P0097940 Nxf2 protein_coding protein_coding MGP_C57BL6NJ_T0097941.1 MGP_C57BL6NJ_G0036573.1 mouse_genomes_project X 136031442 136054380 - MGP_C57BL6NJ_P0097941 Nxf2 protein_coding protein_coding MGP_C57BL6NJ_T0097942.1 MGP_C57BL6NJ_G0036573.1 mouse_genomes_project X 136031442 136053522 - MGP_C57BL6NJ_P0097942 Nxf2 protein_coding protein_coding MGP_C57BL6NJ_T0016844.1 MGP_C57BL6NJ_G0014889.1 mouse_genomes_project X 58994388 58995378 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096252.1 MGP_C57BL6NJ_G0036088.1 mouse_genomes_project X 12735352 12752545 - Fundc1 protein_coding processed_transcript MGP_C57BL6NJ_T0096253.1 MGP_C57BL6NJ_G0036088.1 mouse_genomes_project X 12735352 12753174 - MGP_C57BL6NJ_P0096253 Fundc1 protein_coding protein_coding MGP_C57BL6NJ_T0096254.1 MGP_C57BL6NJ_G0036088.1 mouse_genomes_project X 12735388 12753101 - MGP_C57BL6NJ_P0096254 Fundc1 protein_coding protein_coding MGP_C57BL6NJ_T0097322.1 MGP_C57BL6NJ_G0036395.1 mouse_genomes_project X 90670235 90673710 + MGP_C57BL6NJ_P0097322 Mageb5 protein_coding protein_coding MGP_C57BL6NJ_T0096081.1 MGP_C57BL6NJ_G0036029.1 mouse_genomes_project X 2620289 2620432 - MGP_C57BL6NJ_P0096081 protein_coding protein_coding MGP_C57BL6NJ_T0017314.1 MGP_C57BL6NJ_G0015359.1 mouse_genomes_project X 153474493 153474649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096420.1 MGP_C57BL6NJ_G0036146.1 mouse_genomes_project X 33223549 33224447 + MGP_C57BL6NJ_P0096420 Rhox2b protein_coding protein_coding MGP_C57BL6NJ_T0096362.1 MGP_C57BL6NJ_G0036120.1 mouse_genomes_project X 19404911 19406144 - MGP_C57BL6NJ_P0096362 Gm4985 protein_coding protein_coding MGP_C57BL6NJ_T0011452.1 MGP_C57BL6NJ_G0009537.1 mouse_genomes_project X 95547802 95547912 + Mir223 miRNA miRNA MGP_C57BL6NJ_T0011491.1 MGP_C57BL6NJ_G0009576.1 mouse_genomes_project X 169985881 169985990 - Gm22368 miRNA miRNA MGP_C57BL6NJ_T0017389.1 MGP_C57BL6NJ_G0015434.1 mouse_genomes_project X 169410631 169412029 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017155.1 MGP_C57BL6NJ_G0015200.1 mouse_genomes_project X 115892716 115893570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009591.1 MGP_C57BL6NJ_G0007699.1 mouse_genomes_project X 100118157 100126466 + Gm14902 lincRNA lincRNA MGP_C57BL6NJ_T0097943.1 MGP_C57BL6NJ_G0036574.1 mouse_genomes_project X 136062742 136103116 - MGP_C57BL6NJ_P0097943 Zmat1 protein_coding protein_coding MGP_C57BL6NJ_T0097944.1 MGP_C57BL6NJ_G0036574.1 mouse_genomes_project X 136062745 136103140 - MGP_C57BL6NJ_P0097944 Zmat1 protein_coding protein_coding MGP_C57BL6NJ_T0097945.1 MGP_C57BL6NJ_G0036574.1 mouse_genomes_project X 136064147 136069955 - Zmat1 protein_coding retained_intron MGP_C57BL6NJ_T0016753.1 MGP_C57BL6NJ_G0014798.1 mouse_genomes_project X 36777021 36778132 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011488.1 MGP_C57BL6NJ_G0009573.1 mouse_genomes_project X 153908515 153908623 + Mir98 miRNA miRNA MGP_C57BL6NJ_T0103619.1 MGP_C57BL6NJ_G0041411.1 mouse_genomes_project X 161674999 161681864 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016700.1 MGP_C57BL6NJ_G0014745.1 mouse_genomes_project X 11754624 11757219 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096275.1 MGP_C57BL6NJ_G0036096.1 mouse_genomes_project X 15713281 15810796 + MGP_C57BL6NJ_P0096275 Jade3 protein_coding protein_coding MGP_C57BL6NJ_T0096276.1 MGP_C57BL6NJ_G0036096.1 mouse_genomes_project X 15713381 15782049 + Jade3 protein_coding retained_intron MGP_C57BL6NJ_T0096277.1 MGP_C57BL6NJ_G0036096.1 mouse_genomes_project X 15746156 15808753 + MGP_C57BL6NJ_P0096277 Jade3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096278.1 MGP_C57BL6NJ_G0036096.1 mouse_genomes_project X 15746159 15808753 + MGP_C57BL6NJ_P0096278 Jade3 protein_coding protein_coding MGP_C57BL6NJ_T0017344.1 MGP_C57BL6NJ_G0015389.1 mouse_genomes_project X 160017844 160019586 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016736.1 MGP_C57BL6NJ_G0014781.1 mouse_genomes_project X 31911651 31911945 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096306.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16105325 16174446 + MGP_C57BL6NJ_P0096306 Araf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096307.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161322 16174468 + MGP_C57BL6NJ_P0096307 Araf protein_coding protein_coding MGP_C57BL6NJ_T0096308.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161343 16169459 + Araf protein_coding retained_intron MGP_C57BL6NJ_T0096309.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161345 16166889 + MGP_C57BL6NJ_P0096309 Araf protein_coding protein_coding MGP_C57BL6NJ_T0096310.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161354 16168545 + Araf protein_coding processed_transcript MGP_C57BL6NJ_T0096311.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161357 16166874 + MGP_C57BL6NJ_P0096311 Araf protein_coding protein_coding MGP_C57BL6NJ_T0096312.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161361 16165702 + Araf protein_coding retained_intron MGP_C57BL6NJ_T0096313.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16161368 16167435 + MGP_C57BL6NJ_P0096313 Araf protein_coding protein_coding MGP_C57BL6NJ_T0096314.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16165114 16166199 + Araf protein_coding retained_intron MGP_C57BL6NJ_T0096315.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16167402 16174062 + MGP_C57BL6NJ_P0096315 Araf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096316.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16171600 16174062 + MGP_C57BL6NJ_P0096316 Araf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096317.1 MGP_C57BL6NJ_G0036103.1 mouse_genomes_project X 16171671 16174157 + MGP_C57BL6NJ_P0096317 Araf protein_coding protein_coding MGP_C57BL6NJ_T0098413.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160012404 160050292 - Mbtps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098414.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160025833 160082424 - MGP_C57BL6NJ_P0098414 Mbtps2 protein_coding protein_coding MGP_C57BL6NJ_T0098415.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160047233 160082359 - MGP_C57BL6NJ_P0098415 Mbtps2 protein_coding protein_coding MGP_C57BL6NJ_T0098417.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160050352 160062126 - Mbtps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098418.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160050380 160082279 - MGP_C57BL6NJ_P0098418 Mbtps2 protein_coding protein_coding MGP_C57BL6NJ_T0098419.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160053561 160082360 - Mbtps2 protein_coding retained_intron MGP_C57BL6NJ_T0098420.1 MGP_C57BL6NJ_G0036703.1 mouse_genomes_project X 160073473 160082352 - Mbtps2 protein_coding retained_intron MGP_C57BL6NJ_T0016642.1 MGP_C57BL6NJ_G0014687.1 mouse_genomes_project X 201778 207289 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097178.1 MGP_C57BL6NJ_G0036345.1 mouse_genomes_project X 72581748 72582684 - MGP_C57BL6NJ_P0097178 Olfr1326-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0095975.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297223 2325336 + MGP_C57BL6NJ_P0095975 Cacna1f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095976.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297238 2308250 + Cacna1f protein_coding retained_intron MGP_C57BL6NJ_T0095977.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297239 2325339 + MGP_C57BL6NJ_P0095977 Cacna1f protein_coding protein_coding MGP_C57BL6NJ_T0095978.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297260 2309274 + MGP_C57BL6NJ_P0095978 Cacna1f protein_coding protein_coding MGP_C57BL6NJ_T0095979.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297269 2325339 + MGP_C57BL6NJ_P0095979 Cacna1f protein_coding protein_coding MGP_C57BL6NJ_T0095980.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2297284 2325337 + Cacna1f protein_coding retained_intron MGP_C57BL6NJ_T0095981.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2316372 2318084 + Cacna1f protein_coding retained_intron MGP_C57BL6NJ_T0095982.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2317336 2320389 + MGP_C57BL6NJ_P0095982 Cacna1f protein_coding protein_coding MGP_C57BL6NJ_T0095983.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2317336 2320642 + MGP_C57BL6NJ_P0095983 Cacna1f protein_coding protein_coding MGP_C57BL6NJ_T0095984.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2318331 2319905 + Cacna1f protein_coding retained_intron MGP_C57BL6NJ_T0095985.1 MGP_C57BL6NJ_G0036012.1 mouse_genomes_project X 2321418 2323132 + Cacna1f protein_coding retained_intron MGP_C57BL6NJ_T0096436.1 MGP_C57BL6NJ_G0036159.1 mouse_genomes_project X 33781793 33789992 - MGP_C57BL6NJ_P0096436 Rhox12 protein_coding protein_coding MGP_C57BL6NJ_T0096437.1 MGP_C57BL6NJ_G0036159.1 mouse_genomes_project X 33781894 33785860 - MGP_C57BL6NJ_P0096437 Rhox12 protein_coding protein_coding MGP_C57BL6NJ_T0096438.1 MGP_C57BL6NJ_G0036159.1 mouse_genomes_project X 33783293 33789872 - MGP_C57BL6NJ_P0096438 Rhox12 protein_coding protein_coding MGP_C57BL6NJ_T0097257.1 MGP_C57BL6NJ_G0036371.1 mouse_genomes_project X 76105369 76114902 - MGP_C57BL6NJ_P0097257 5430402E10Rik protein_coding protein_coding MGP_C57BL6NJ_T0017183.1 MGP_C57BL6NJ_G0015228.1 mouse_genomes_project X 122388662 122389426 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017138.1 MGP_C57BL6NJ_G0015183.1 mouse_genomes_project X 112791237 112791712 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096616.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47387455 47478982 - MGP_C57BL6NJ_P0096616 Mbnl3 protein_coding protein_coding MGP_C57BL6NJ_T0096617.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47390266 47479140 - MGP_C57BL6NJ_P0096617 Mbnl3 protein_coding protein_coding MGP_C57BL6NJ_T0096618.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47390266 47417534 - MGP_C57BL6NJ_P0096618 Mbnl3 protein_coding protein_coding MGP_C57BL6NJ_T0096619.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47390638 47397557 - Mbnl3 protein_coding retained_intron MGP_C57BL6NJ_T0096620.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47390675 47436496 - MGP_C57BL6NJ_P0096620 Mbnl3 protein_coding protein_coding MGP_C57BL6NJ_T0096621.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47391071 47410528 - Mbnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0096622.1 MGP_C57BL6NJ_G0036209.1 mouse_genomes_project X 47436238 47479682 - Mbnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0016888.1 MGP_C57BL6NJ_G0014933.1 mouse_genomes_project X 68195190 68195683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009613.1 MGP_C57BL6NJ_G0007708.1 mouse_genomes_project X 120078779 120080739 - Gm14929 lincRNA lincRNA MGP_C57BL6NJ_T0017355.1 MGP_C57BL6NJ_G0015400.1 mouse_genomes_project X 161028794 161029379 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098473.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031319 163145068 + MGP_C57BL6NJ_P0098473 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098474.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031353 163145068 + MGP_C57BL6NJ_P0098474 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098475.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031353 163145068 + MGP_C57BL6NJ_P0098475 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098476.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031354 163145068 + MGP_C57BL6NJ_P0098476 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098477.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031354 163145068 + MGP_C57BL6NJ_P0098477 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098478.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031354 163145068 + MGP_C57BL6NJ_P0098478 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098479.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031357 163105328 + Adgrg2 protein_coding retained_intron MGP_C57BL6NJ_T0098480.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163031357 163115225 + MGP_C57BL6NJ_P0098480 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0098481.1 MGP_C57BL6NJ_G0036715.1 mouse_genomes_project X 163069590 163143736 + MGP_C57BL6NJ_P0098481 Adgrg2 protein_coding protein_coding MGP_C57BL6NJ_T0097377.1 MGP_C57BL6NJ_G0036412.1 mouse_genomes_project X 93840836 93843327 + MGP_C57BL6NJ_P0097377 Gspt2 protein_coding protein_coding MGP_C57BL6NJ_T0097378.1 MGP_C57BL6NJ_G0036412.1 mouse_genomes_project X 93840843 93848012 + MGP_C57BL6NJ_P0097378 Gspt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009630.1 MGP_C57BL6NJ_G0007718.1 mouse_genomes_project X 163984990 164008045 + lincRNA lincRNA MGP_C57BL6NJ_T0017020.1 MGP_C57BL6NJ_G0015065.1 mouse_genomes_project X 93820680 93821006 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096377.1 MGP_C57BL6NJ_G0036126.1 mouse_genomes_project X 31961880 31967665 - Gm14569 protein_coding processed_transcript MGP_C57BL6NJ_T0096378.1 MGP_C57BL6NJ_G0036126.1 mouse_genomes_project X 31961880 31964960 - Gm14569 protein_coding processed_transcript MGP_C57BL6NJ_T0096379.1 MGP_C57BL6NJ_G0036126.1 mouse_genomes_project X 31961880 32027574 - MGP_C57BL6NJ_P0096379 Gm14569 protein_coding protein_coding MGP_C57BL6NJ_T0096380.1 MGP_C57BL6NJ_G0036126.1 mouse_genomes_project X 31976830 32020106 - Gm14569 protein_coding processed_transcript MGP_C57BL6NJ_T0102088.1 MGP_C57BL6NJ_G0040134.1 mouse_genomes_project X 122170469 122170605 + Gm23277 snoRNA snoRNA MGP_C57BL6NJ_T0017342.1 MGP_C57BL6NJ_G0015387.1 mouse_genomes_project X 159824566 159825612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016937.1 MGP_C57BL6NJ_G0014982.1 mouse_genomes_project X 76816062 76816434 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016957.1 MGP_C57BL6NJ_G0015002.1 mouse_genomes_project X 83449296 83449608 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097953.1 MGP_C57BL6NJ_G0036576.1 mouse_genomes_project X 136744263 136759734 - MGP_C57BL6NJ_P0097953 Prame protein_coding protein_coding MGP_C57BL6NJ_T0097954.1 MGP_C57BL6NJ_G0036576.1 mouse_genomes_project X 136744405 136747067 - MGP_C57BL6NJ_P0097954 Prame protein_coding protein_coding MGP_C57BL6NJ_T0005753.1 MGP_C57BL6NJ_G0004845.1 mouse_genomes_project X 73713062 73714879 + Gm15063 antisense antisense MGP_C57BL6NJ_T0016667.1 MGP_C57BL6NJ_G0014712.1 mouse_genomes_project X 3818719 3819506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017160.1 MGP_C57BL6NJ_G0015205.1 mouse_genomes_project X 117594799 117595892 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011421.1 MGP_C57BL6NJ_G0009506.1 mouse_genomes_project X 64196962 64197038 - Mir883a miRNA miRNA MGP_C57BL6NJ_T0097612.1 MGP_C57BL6NJ_G0036468.1 mouse_genomes_project X 101638231 101659714 - MGP_C57BL6NJ_P0097612 Ercc6l protein_coding protein_coding MGP_C57BL6NJ_T0009567.1 MGP_C57BL6NJ_G0007680.1 mouse_genomes_project X 42575841 42882598 - lincRNA lincRNA MGP_C57BL6NJ_T0096521.1 MGP_C57BL6NJ_G0036177.1 mouse_genomes_project X 39532825 39535198 + MGP_C57BL6NJ_P0096521 Gm362 protein_coding protein_coding MGP_C57BL6NJ_T0098354.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154687079 154888183 - MGP_C57BL6NJ_P0098354 Shroom2 protein_coding protein_coding MGP_C57BL6NJ_T0098355.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154687562 154726079 - Shroom2 protein_coding processed_transcript MGP_C57BL6NJ_T0098356.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154687562 154888187 - MGP_C57BL6NJ_P0098356 Shroom2 protein_coding protein_coding MGP_C57BL6NJ_T0098357.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154690098 154755600 - Shroom2 protein_coding processed_transcript MGP_C57BL6NJ_T0098358.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154696464 154725460 - Shroom2 protein_coding processed_transcript MGP_C57BL6NJ_T0098359.1 MGP_C57BL6NJ_G0036680.1 mouse_genomes_project X 154696673 154725646 - Shroom2 protein_coding processed_transcript MGP_C57BL6NJ_T0097886.1 MGP_C57BL6NJ_G0036560.1 mouse_genomes_project X 135336222 135347504 + MGP_C57BL6NJ_P0097886 Tmem35a protein_coding protein_coding MGP_C57BL6NJ_T0011436.1 MGP_C57BL6NJ_G0009521.1 mouse_genomes_project X 65511907 65511985 - Mir547 miRNA miRNA MGP_C57BL6NJ_T0102068.1 MGP_C57BL6NJ_G0040114.1 mouse_genomes_project X 71658512 71658635 + Gm25226 snoRNA snoRNA MGP_C57BL6NJ_T0016958.1 MGP_C57BL6NJ_G0015003.1 mouse_genomes_project X 83821688 83821891 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017108.1 MGP_C57BL6NJ_G0015153.1 mouse_genomes_project X 106456987 106457494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016660.1 MGP_C57BL6NJ_G0014705.1 mouse_genomes_project X 3382115 3383642 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097795.1 MGP_C57BL6NJ_G0036528.1 mouse_genomes_project X 112336405 112359484 - MGP_C57BL6NJ_P0097795 Satl1 protein_coding protein_coding MGP_C57BL6NJ_T0097796.1 MGP_C57BL6NJ_G0036528.1 mouse_genomes_project X 112336407 112360441 - MGP_C57BL6NJ_P0097796 Satl1 protein_coding protein_coding MGP_C57BL6NJ_T0016840.1 MGP_C57BL6NJ_G0014885.1 mouse_genomes_project X 58569576 58570011 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097713.1 MGP_C57BL6NJ_G0036501.1 mouse_genomes_project X 105935979 105950112 - MGP_C57BL6NJ_P0097713 Taf9b protein_coding protein_coding MGP_C57BL6NJ_T0097714.1 MGP_C57BL6NJ_G0036501.1 mouse_genomes_project X 105935979 105948855 - MGP_C57BL6NJ_P0097714 Taf9b protein_coding protein_coding MGP_C57BL6NJ_T0097715.1 MGP_C57BL6NJ_G0036501.1 mouse_genomes_project X 105947293 105949704 - MGP_C57BL6NJ_P0097715 Taf9b protein_coding protein_coding MGP_C57BL6NJ_T0100823.1 MGP_C57BL6NJ_G0038869.1 mouse_genomes_project X 147930666 147930726 - Gm26151 snRNA snRNA MGP_C57BL6NJ_T0097613.1 MGP_C57BL6NJ_G0036469.1 mouse_genomes_project X 101697443 101701897 - MGP_C57BL6NJ_P0097613 Rps4x protein_coding protein_coding MGP_C57BL6NJ_T0097614.1 MGP_C57BL6NJ_G0036469.1 mouse_genomes_project X 101697576 101699240 - Rps4x protein_coding retained_intron MGP_C57BL6NJ_T0097615.1 MGP_C57BL6NJ_G0036469.1 mouse_genomes_project X 101700129 101701839 - Rps4x protein_coding retained_intron MGP_C57BL6NJ_T0096908.1 MGP_C57BL6NJ_G0036314.1 mouse_genomes_project X 71662512 71678344 + MGP_C57BL6NJ_P0096908 Plxnb3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096909.1 MGP_C57BL6NJ_G0036314.1 mouse_genomes_project X 71662928 71678352 + Plxnb3 protein_coding retained_intron MGP_C57BL6NJ_T0096910.1 MGP_C57BL6NJ_G0036314.1 mouse_genomes_project X 71662928 71678352 + Plxnb3 protein_coding retained_intron MGP_C57BL6NJ_T0096911.1 MGP_C57BL6NJ_G0036314.1 mouse_genomes_project X 71662928 71678352 + Plxnb3 protein_coding retained_intron MGP_C57BL6NJ_T0096912.1 MGP_C57BL6NJ_G0036314.1 mouse_genomes_project X 71671368 71675502 + Plxnb3 protein_coding retained_intron MGP_C57BL6NJ_T0098395.1 MGP_C57BL6NJ_G0036697.1 mouse_genomes_project X 157615635 157616775 + Acot9 protein_coding processed_transcript MGP_C57BL6NJ_T0098396.1 MGP_C57BL6NJ_G0036697.1 mouse_genomes_project X 157615635 157651851 + MGP_C57BL6NJ_P0098396 Acot9 protein_coding protein_coding MGP_C57BL6NJ_T0098397.1 MGP_C57BL6NJ_G0036697.1 mouse_genomes_project X 157615697 157651843 + MGP_C57BL6NJ_P0098397 Acot9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098398.1 MGP_C57BL6NJ_G0036697.1 mouse_genomes_project X 157648039 157651110 + Acot9 protein_coding retained_intron MGP_C57BL6NJ_T0017029.1 MGP_C57BL6NJ_G0015074.1 mouse_genomes_project X 94646834 94648944 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103585.1 MGP_C57BL6NJ_G0041377.1 mouse_genomes_project X 74385261 74387401 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097328.1 MGP_C57BL6NJ_G0036400.1 mouse_genomes_project X 91556600 91557333 + MGP_C57BL6NJ_P0097328 Gm5941 protein_coding protein_coding MGP_C57BL6NJ_T0096416.1 MGP_C57BL6NJ_G0036142.1 mouse_genomes_project X 32799403 32801097 - MGP_C57BL6NJ_P0096416 Gm9 protein_coding protein_coding MGP_C57BL6NJ_T0096935.1 MGP_C57BL6NJ_G0036318.1 mouse_genomes_project X 71699196 71731734 - MGP_C57BL6NJ_P0096935 Pdzd4 protein_coding protein_coding MGP_C57BL6NJ_T0096936.1 MGP_C57BL6NJ_G0036318.1 mouse_genomes_project X 71699196 71731734 - MGP_C57BL6NJ_P0096936 Pdzd4 protein_coding protein_coding MGP_C57BL6NJ_T0097263.1 MGP_C57BL6NJ_G0036376.1 mouse_genomes_project X 76548299 76549785 + MGP_C57BL6NJ_P0097263 4930480E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0097990.1 MGP_C57BL6NJ_G0036589.1 mouse_genomes_project X 137423550 137436916 + MGP_C57BL6NJ_P0097990 Tceal7 protein_coding protein_coding MGP_C57BL6NJ_T0097991.1 MGP_C57BL6NJ_G0036589.1 mouse_genomes_project X 137435569 137437629 + MGP_C57BL6NJ_P0097991 Tceal7 protein_coding protein_coding MGP_C57BL6NJ_T0017071.1 MGP_C57BL6NJ_G0015116.1 mouse_genomes_project X 102631890 102632580 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011417.1 MGP_C57BL6NJ_G0009502.1 mouse_genomes_project X 58054932 58055025 + Gm24396 miRNA miRNA MGP_C57BL6NJ_T0098671.1 MGP_C57BL6NJ_G0036766.1 mouse_genomes_project X 172855603 172858799 - MGP_C57BL6NJ_P0098671 4933400A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0098672.1 MGP_C57BL6NJ_G0036766.1 mouse_genomes_project X 172855724 172858842 - MGP_C57BL6NJ_P0098672 4933400A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0098673.1 MGP_C57BL6NJ_G0036766.1 mouse_genomes_project X 172855771 172858764 - MGP_C57BL6NJ_P0098673 4933400A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0017223.1 MGP_C57BL6NJ_G0015268.1 mouse_genomes_project X 137174043 137174763 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097837.1 MGP_C57BL6NJ_G0036544.1 mouse_genomes_project X 127429423 127432794 - MGP_C57BL6NJ_P0097837 4932411N23Rik protein_coding protein_coding MGP_C57BL6NJ_T0097995.1 MGP_C57BL6NJ_G0036592.1 mouse_genomes_project X 137775556 137811699 + MGP_C57BL6NJ_P0097995 Kir3dl1 protein_coding protein_coding MGP_C57BL6NJ_T0011414.1 MGP_C57BL6NJ_G0009499.1 mouse_genomes_project X 55891686 55891765 - Mir504 miRNA miRNA MGP_C57BL6NJ_T0016887.1 MGP_C57BL6NJ_G0014932.1 mouse_genomes_project X 68167032 68167496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017063.1 MGP_C57BL6NJ_G0015108.1 mouse_genomes_project X 101727834 101728191 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017260.1 MGP_C57BL6NJ_G0015305.1 mouse_genomes_project X 142797454 142797816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011392.1 MGP_C57BL6NJ_G0009477.1 mouse_genomes_project X 35781956 35782027 - Gm26194 miRNA miRNA MGP_C57BL6NJ_T0012034.1 MGP_C57BL6NJ_G0010119.1 mouse_genomes_project X 103228131 103228258 + Gm27285 misc_RNA misc_RNA MGP_C57BL6NJ_T0017307.1 MGP_C57BL6NJ_G0015352.1 mouse_genomes_project X 152316914 152317193 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016669.1 MGP_C57BL6NJ_G0014714.1 mouse_genomes_project X 4827393 4828285 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099190.1 MGP_C57BL6NJ_G0037254.1 mouse_genomes_project X 5352857 5352966 + Gm25885 rRNA rRNA MGP_C57BL6NJ_T0097430.1 MGP_C57BL6NJ_G0036426.1 mouse_genomes_project X 96384930 96394409 + MGP_C57BL6NJ_P0097430 Pgr15l protein_coding protein_coding MGP_C57BL6NJ_T0016735.1 MGP_C57BL6NJ_G0014780.1 mouse_genomes_project X 31833685 31834181 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097840.1 MGP_C57BL6NJ_G0036547.1 mouse_genomes_project X 128379917 128388245 - MGP_C57BL6NJ_P0097840 Cldn34c4 protein_coding protein_coding MGP_C57BL6NJ_T0016879.1 MGP_C57BL6NJ_G0014924.1 mouse_genomes_project X 66492081 66492937 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009606.1 MGP_C57BL6NJ_G0007704.1 mouse_genomes_project X 105045368 105091764 - 5330434G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009607.1 MGP_C57BL6NJ_G0007704.1 mouse_genomes_project X 105047446 105091764 - 5330434G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009608.1 MGP_C57BL6NJ_G0007704.1 mouse_genomes_project X 105072565 105091742 - 5330434G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009609.1 MGP_C57BL6NJ_G0007704.1 mouse_genomes_project X 105075233 105087902 - 5330434G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0017316.1 MGP_C57BL6NJ_G0015361.1 mouse_genomes_project X 153748233 153748410 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012033.1 MGP_C57BL6NJ_G0010118.1 mouse_genomes_project X 103227033 103227126 + Gm27987 misc_RNA misc_RNA MGP_C57BL6NJ_T0102355.1 MGP_C57BL6NJ_G0040301.1 mouse_genomes_project X 107416437 107417656 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102356.1 MGP_C57BL6NJ_G0040301.1 mouse_genomes_project X 107416446 107417601 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0017091.1 MGP_C57BL6NJ_G0015136.1 mouse_genomes_project X 103565269 103566718 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098224.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152414154 152485094 - MGP_C57BL6NJ_P0098224 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098225.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152414987 152483332 - MGP_C57BL6NJ_P0098225 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098230.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152462060 152485094 - MGP_C57BL6NJ_P0098230 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098231.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152464705 152483335 - Apex2 protein_coding retained_intron MGP_C57BL6NJ_T0098232.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152464706 152485118 - Apex2 protein_coding processed_transcript MGP_C57BL6NJ_T0098233.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152464706 152483346 - MGP_C57BL6NJ_P0098233 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098234.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152464706 152483399 - MGP_C57BL6NJ_P0098234 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098235.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152465657 152481456 - Apex2 protein_coding processed_transcript MGP_C57BL6NJ_T0098236.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152465747 152483321 - MGP_C57BL6NJ_P0098236 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0098237.1 MGP_C57BL6NJ_G0036660.1 mouse_genomes_project X 152479385 152483331 - MGP_C57BL6NJ_P0098237 Apex2 protein_coding protein_coding MGP_C57BL6NJ_T0009583.1 MGP_C57BL6NJ_G0007691.1 mouse_genomes_project X 90102410 90103034 + Gm14773 lincRNA lincRNA MGP_C57BL6NJ_T0016977.1 MGP_C57BL6NJ_G0015022.1 mouse_genomes_project X 87543544 87543736 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011480.1 MGP_C57BL6NJ_G0009565.1 mouse_genomes_project X 148712622 148712709 + Mir1912 miRNA miRNA MGP_C57BL6NJ_T0097994.1 MGP_C57BL6NJ_G0036591.1 mouse_genomes_project X 137484934 137486103 + MGP_C57BL6NJ_P0097994 Ngfrap1 protein_coding protein_coding MGP_C57BL6NJ_T0017339.1 MGP_C57BL6NJ_G0015384.1 mouse_genomes_project X 158950032 158951002 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009635.1 MGP_C57BL6NJ_G0007723.1 mouse_genomes_project X 169810059 169816840 - Gm15230 lincRNA lincRNA MGP_C57BL6NJ_T0017068.1 MGP_C57BL6NJ_G0015113.1 mouse_genomes_project X 102538153 102538359 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016993.1 MGP_C57BL6NJ_G0015038.1 mouse_genomes_project X 90257450 90258474 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096726.1 MGP_C57BL6NJ_G0036251.1 mouse_genomes_project X 55694120 55705552 + MGP_C57BL6NJ_P0096726 4930550L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0096727.1 MGP_C57BL6NJ_G0036251.1 mouse_genomes_project X 55696221 55705552 + MGP_C57BL6NJ_P0096727 4930550L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0096888.1 MGP_C57BL6NJ_G0036309.1 mouse_genomes_project X 71539176 71543272 + MGP_C57BL6NJ_P0096888 Dusp9 protein_coding protein_coding MGP_C57BL6NJ_T0098494.1 MGP_C57BL6NJ_G0036718.1 mouse_genomes_project X 163423542 163457218 + MGP_C57BL6NJ_P0098494 Rs1 protein_coding protein_coding MGP_C57BL6NJ_T0098495.1 MGP_C57BL6NJ_G0036718.1 mouse_genomes_project X 163423709 163452408 + MGP_C57BL6NJ_P0098495 Rs1 protein_coding protein_coding MGP_C57BL6NJ_T0098499.1 MGP_C57BL6NJ_G0036718.1 mouse_genomes_project X 163449067 163452905 + Rs1 protein_coding processed_transcript MGP_C57BL6NJ_T0011469.1 MGP_C57BL6NJ_G0009554.1 mouse_genomes_project X 135836725 135836826 + Mir7093 miRNA miRNA MGP_C57BL6NJ_T0017326.1 MGP_C57BL6NJ_G0015371.1 mouse_genomes_project X 155864840 155865606 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099196.1 MGP_C57BL6NJ_G0037260.1 mouse_genomes_project X 68803412 68803530 + n-R5s8 rRNA rRNA MGP_C57BL6NJ_T0017000.1 MGP_C57BL6NJ_G0015045.1 mouse_genomes_project X 90914857 90918273 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099194.1 MGP_C57BL6NJ_G0037258.1 mouse_genomes_project X 46096486 46096574 + n-R5s6 rRNA rRNA MGP_C57BL6NJ_T0009639.1 MGP_C57BL6NJ_G0007725.1 mouse_genomes_project X 170046600 170060413 - Gm15232 lincRNA lincRNA MGP_C57BL6NJ_T0100792.1 MGP_C57BL6NJ_G0038838.1 mouse_genomes_project X 73718418 73718582 - Gm25421 snRNA snRNA MGP_C57BL6NJ_T0102107.1 MGP_C57BL6NJ_G0040153.1 mouse_genomes_project X 160903033 160903184 + Gm22522 snoRNA snoRNA MGP_C57BL6NJ_T0103573.1 MGP_C57BL6NJ_G0041365.1 mouse_genomes_project X 34001402 34011930 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0096864.1 MGP_C57BL6NJ_G0036299.1 mouse_genomes_project X 70814134 70816563 - MGP_C57BL6NJ_P0096864 Pnma5 protein_coding protein_coding MGP_C57BL6NJ_T0096865.1 MGP_C57BL6NJ_G0036299.1 mouse_genomes_project X 70814141 70815563 - MGP_C57BL6NJ_P0096865 Pnma5 protein_coding protein_coding MGP_C57BL6NJ_T0011471.1 MGP_C57BL6NJ_G0009556.1 mouse_genomes_project X 136929141 136929245 - Mir1970 miRNA miRNA MGP_C57BL6NJ_T0017301.1 MGP_C57BL6NJ_G0015346.1 mouse_genomes_project X 148263055 148264263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100781.1 MGP_C57BL6NJ_G0038827.1 mouse_genomes_project X 53412133 53412298 + Gm26312 snRNA snRNA MGP_C57BL6NJ_T0011440.1 MGP_C57BL6NJ_G0009525.1 mouse_genomes_project X 70016878 70016963 - Mir452 miRNA miRNA MGP_C57BL6NJ_T0017152.1 MGP_C57BL6NJ_G0015197.1 mouse_genomes_project X 115523133 115523766 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097319.1 MGP_C57BL6NJ_G0036392.1 mouse_genomes_project X 88573245 88576469 + MGP_C57BL6NJ_P0097319 4932429P05Rik protein_coding protein_coding MGP_C57BL6NJ_T0097353.1 MGP_C57BL6NJ_G0036407.1 mouse_genomes_project X 93348153 93375287 - MGP_C57BL6NJ_P0097353 protein_coding protein_coding MGP_C57BL6NJ_T0097354.1 MGP_C57BL6NJ_G0036407.1 mouse_genomes_project X 93361088 93375229 - MGP_C57BL6NJ_P0097354 protein_coding protein_coding MGP_C57BL6NJ_T0097355.1 MGP_C57BL6NJ_G0036407.1 mouse_genomes_project X 93364325 93375440 - protein_coding processed_transcript MGP_C57BL6NJ_T0016832.1 MGP_C57BL6NJ_G0014877.1 mouse_genomes_project X 57601824 57602618 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098372.1 MGP_C57BL6NJ_G0036687.1 mouse_genomes_project X 155706927 155710271 + MGP_C57BL6NJ_P0098372 Ubqln2 protein_coding protein_coding MGP_C57BL6NJ_T0097816.1 MGP_C57BL6NJ_G0036534.1 mouse_genomes_project X 114536857 114624105 + MGP_C57BL6NJ_P0097816 Klhl4 protein_coding protein_coding MGP_C57BL6NJ_T0097817.1 MGP_C57BL6NJ_G0036534.1 mouse_genomes_project X 114536857 114624105 + MGP_C57BL6NJ_P0097817 Klhl4 protein_coding protein_coding MGP_C57BL6NJ_T0097818.1 MGP_C57BL6NJ_G0036534.1 mouse_genomes_project X 114537128 114623784 + MGP_C57BL6NJ_P0097818 Klhl4 protein_coding protein_coding MGP_C57BL6NJ_T0097251.1 MGP_C57BL6NJ_G0036368.1 mouse_genomes_project X 75697063 75851928 + MGP_C57BL6NJ_P0097251 Tbl1x protein_coding protein_coding MGP_C57BL6NJ_T0097252.1 MGP_C57BL6NJ_G0036368.1 mouse_genomes_project X 75697264 75848688 + Tbl1x protein_coding retained_intron MGP_C57BL6NJ_T0016787.1 MGP_C57BL6NJ_G0014832.1 mouse_genomes_project X 46180627 46181300 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012044.1 MGP_C57BL6NJ_G0010129.1 mouse_genomes_project X 141201904 141202228 - Gm24380 misc_RNA misc_RNA MGP_C57BL6NJ_T0100834.1 MGP_C57BL6NJ_G0038880.1 mouse_genomes_project X 168636897 168637004 - Gm22062 snRNA snRNA MGP_C57BL6NJ_T0097250.1 MGP_C57BL6NJ_G0036367.1 mouse_genomes_project X 74802452 74813853 - MGP_C57BL6NJ_P0097250 Cldn34d protein_coding protein_coding MGP_C57BL6NJ_T0016896.1 MGP_C57BL6NJ_G0014941.1 mouse_genomes_project X 70244401 70247909 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011453.1 MGP_C57BL6NJ_G0009538.1 mouse_genomes_project X 98045190 98045288 - Gm27554 miRNA miRNA MGP_C57BL6NJ_T0098072.1 MGP_C57BL6NJ_G0036618.1 mouse_genomes_project X 141232465 141299595 + MGP_C57BL6NJ_P0098072 Tbc1d8b protein_coding protein_coding MGP_C57BL6NJ_T0098074.1 MGP_C57BL6NJ_G0036618.1 mouse_genomes_project X 141282448 141291433 + Tbc1d8b protein_coding processed_transcript MGP_C57BL6NJ_T0016769.1 MGP_C57BL6NJ_G0014814.1 mouse_genomes_project X 40460984 40461379 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097992.1 MGP_C57BL6NJ_G0036590.1 mouse_genomes_project X 137456260 137459144 + MGP_C57BL6NJ_P0097992 Wbp5 protein_coding protein_coding MGP_C57BL6NJ_T0097993.1 MGP_C57BL6NJ_G0036590.1 mouse_genomes_project X 137456864 137459144 + MGP_C57BL6NJ_P0097993 Wbp5 protein_coding protein_coding MGP_C57BL6NJ_T0017114.1 MGP_C57BL6NJ_G0015159.1 mouse_genomes_project X 107080310 107080781 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098385.1 MGP_C57BL6NJ_G0036693.1 mouse_genomes_project X 156776250 156778931 + MGP_C57BL6NJ_P0098385 Samt4 protein_coding protein_coding MGP_C57BL6NJ_T0017051.1 MGP_C57BL6NJ_G0015096.1 mouse_genomes_project X 99956275 99956675 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096133.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 2998231 3014769 - MGP_C57BL6NJ_P0096133 Ftsj1 protein_coding protein_coding MGP_C57BL6NJ_T0096134.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3002838 3014673 - MGP_C57BL6NJ_P0096134 Ftsj1 protein_coding protein_coding MGP_C57BL6NJ_T0096135.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3002838 3014758 - MGP_C57BL6NJ_P0096135 Ftsj1 protein_coding protein_coding MGP_C57BL6NJ_T0096136.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3007037 3014571 - Ftsj1 protein_coding retained_intron MGP_C57BL6NJ_T0096137.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3007334 3008718 - MGP_C57BL6NJ_P0096137 Ftsj1 protein_coding protein_coding MGP_C57BL6NJ_T0096138.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3007365 3008225 - Ftsj1 protein_coding processed_transcript MGP_C57BL6NJ_T0096139.1 MGP_C57BL6NJ_G0036043.1 mouse_genomes_project X 3010883 3014726 - Ftsj1 protein_coding retained_intron MGP_C57BL6NJ_T0102074.1 MGP_C57BL6NJ_G0040120.1 mouse_genomes_project X 75027780 75027919 + Gm23280 snoRNA snoRNA MGP_C57BL6NJ_T0096052.1 MGP_C57BL6NJ_G0036023.1 mouse_genomes_project X 2531963 2549003 + MGP_C57BL6NJ_P0096052 Kcnd1 protein_coding protein_coding MGP_C57BL6NJ_T0096053.1 MGP_C57BL6NJ_G0036023.1 mouse_genomes_project X 2531981 2532942 + Kcnd1 protein_coding processed_transcript MGP_C57BL6NJ_T0011442.1 MGP_C57BL6NJ_G0009527.1 mouse_genomes_project X 70364189 70364269 - Mir105 miRNA miRNA MGP_C57BL6NJ_T0096868.1 MGP_C57BL6NJ_G0036302.1 mouse_genomes_project X 71077207 71079712 + MGP_C57BL6NJ_P0096868 F8a protein_coding protein_coding MGP_C57BL6NJ_T0098373.1 MGP_C57BL6NJ_G0036688.1 mouse_genomes_project X 155766645 155767476 + MGP_C57BL6NJ_P0098373 Cypt3 protein_coding protein_coding MGP_C57BL6NJ_T0098374.1 MGP_C57BL6NJ_G0036688.1 mouse_genomes_project X 155766645 155767482 + MGP_C57BL6NJ_P0098374 Cypt3 protein_coding protein_coding MGP_C57BL6NJ_T0016974.1 MGP_C57BL6NJ_G0015019.1 mouse_genomes_project X 87396971 87397442 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016995.1 MGP_C57BL6NJ_G0015040.1 mouse_genomes_project X 90261180 90261555 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016805.1 MGP_C57BL6NJ_G0014850.1 mouse_genomes_project X 50344132 50347089 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016779.1 MGP_C57BL6NJ_G0014824.1 mouse_genomes_project X 43614674 43615679 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011425.1 MGP_C57BL6NJ_G0009510.1 mouse_genomes_project X 64216270 64216345 - Mir463 miRNA miRNA MGP_C57BL6NJ_T0016659.1 MGP_C57BL6NJ_G0014704.1 mouse_genomes_project X 3374278 3374638 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011407.1 MGP_C57BL6NJ_G0009492.1 mouse_genomes_project X 49439324 49439393 - Mir450-2 miRNA miRNA MGP_C57BL6NJ_T0100762.1 MGP_C57BL6NJ_G0038808.1 mouse_genomes_project X 10810592 10810699 - Gm25207 snRNA snRNA MGP_C57BL6NJ_T0011463.1 MGP_C57BL6NJ_G0009548.1 mouse_genomes_project X 105078653 105078751 - Mir325 miRNA miRNA MGP_C57BL6NJ_T0016804.1 MGP_C57BL6NJ_G0014849.1 mouse_genomes_project X 50298281 50299008 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096749.1 MGP_C57BL6NJ_G0036259.1 mouse_genomes_project X 58675117 58676576 + MGP_C57BL6NJ_P0096749 Ldoc1 protein_coding protein_coding MGP_C57BL6NJ_T0097484.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977436 99990304 + MGP_C57BL6NJ_P0097484 Arr3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097485.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977455 99990410 + MGP_C57BL6NJ_P0097485 Arr3 protein_coding protein_coding MGP_C57BL6NJ_T0097486.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977481 99985550 + Arr3 protein_coding retained_intron MGP_C57BL6NJ_T0097487.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977502 99984990 + Arr3 protein_coding retained_intron MGP_C57BL6NJ_T0097488.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977513 99985758 + Arr3 protein_coding retained_intron MGP_C57BL6NJ_T0097489.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977520 99990410 + Arr3 protein_coding retained_intron MGP_C57BL6NJ_T0097490.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99977605 99983861 + MGP_C57BL6NJ_P0097490 Arr3 protein_coding protein_coding MGP_C57BL6NJ_T0097491.1 MGP_C57BL6NJ_G0036442.1 mouse_genomes_project X 99983755 99986357 + Arr3 protein_coding retained_intron MGP_C57BL6NJ_T0096019.1 MGP_C57BL6NJ_G0036019.1 mouse_genomes_project X 2424722 2430514 + MGP_C57BL6NJ_P0096019 Praf2 protein_coding protein_coding MGP_C57BL6NJ_T0011427.1 MGP_C57BL6NJ_G0009512.1 mouse_genomes_project X 64218555 64218633 - Mir878 miRNA miRNA MGP_C57BL6NJ_T0011422.1 MGP_C57BL6NJ_G0009507.1 mouse_genomes_project X 64206295 64206373 - Mir883b miRNA miRNA MGP_C57BL6NJ_T0017001.1 MGP_C57BL6NJ_G0015046.1 mouse_genomes_project X 91054688 91055351 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017186.1 MGP_C57BL6NJ_G0015231.1 mouse_genomes_project X 122832909 122833245 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098560.1 MGP_C57BL6NJ_G0036734.1 mouse_genomes_project X 166804072 166856981 - MGP_C57BL6NJ_P0098560 Car5b protein_coding protein_coding MGP_C57BL6NJ_T0098561.1 MGP_C57BL6NJ_G0036734.1 mouse_genomes_project X 166840953 166856965 - Car5b protein_coding retained_intron MGP_C57BL6NJ_T0016952.1 MGP_C57BL6NJ_G0014997.1 mouse_genomes_project X 80804275 80804561 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016839.1 MGP_C57BL6NJ_G0014884.1 mouse_genomes_project X 58417000 58417843 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096645.1 MGP_C57BL6NJ_G0036220.1 mouse_genomes_project X 49643436 49671799 - MGP_C57BL6NJ_P0096645 Fam122b protein_coding protein_coding MGP_C57BL6NJ_T0096646.1 MGP_C57BL6NJ_G0036220.1 mouse_genomes_project X 49643446 49671014 - MGP_C57BL6NJ_P0096646 Fam122b protein_coding protein_coding MGP_C57BL6NJ_T0096647.1 MGP_C57BL6NJ_G0036220.1 mouse_genomes_project X 49643767 49671792 - MGP_C57BL6NJ_P0096647 Fam122b protein_coding protein_coding MGP_C57BL6NJ_T0096648.1 MGP_C57BL6NJ_G0036220.1 mouse_genomes_project X 49644885 49671799 - Fam122b protein_coding processed_transcript MGP_C57BL6NJ_T0002624.1 MGP_C57BL6NJ_G0002511.1 mouse_genomes_project X 129094511 129095576 + TEC TEC MGP_C57BL6NJ_T0011489.1 MGP_C57BL6NJ_G0009574.1 mouse_genomes_project X 165639362 165639440 - Mir3473a miRNA miRNA MGP_C57BL6NJ_T0016810.1 MGP_C57BL6NJ_G0014855.1 mouse_genomes_project X 52695299 52695781 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098019.1 MGP_C57BL6NJ_G0036601.1 mouse_genomes_project X 138260840 138261892 + MGP_C57BL6NJ_P0098019 H2bfm protein_coding protein_coding MGP_C57BL6NJ_T0017019.1 MGP_C57BL6NJ_G0015064.1 mouse_genomes_project X 93811563 93812041 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011486.1 MGP_C57BL6NJ_G0009571.1 mouse_genomes_project X 153853927 153854003 + Mir3113 miRNA miRNA MGP_C57BL6NJ_T0016824.1 MGP_C57BL6NJ_G0014869.1 mouse_genomes_project X 55467067 55467529 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009584.1 MGP_C57BL6NJ_G0007692.1 mouse_genomes_project X 92260819 92261539 + 1700003E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0019144.1 MGP_C57BL6NJ_G0016186.1 mouse_genomes_project X 137294299 137305987 + 5730412P04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0098141.1 MGP_C57BL6NJ_G0036640.1 mouse_genomes_project X 143819481 143821024 - MGP_C57BL6NJ_P0098141 Kcne1l protein_coding protein_coding MGP_C57BL6NJ_T0016742.1 MGP_C57BL6NJ_G0014787.1 mouse_genomes_project X 34878785 34879732 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009605.1 MGP_C57BL6NJ_G0007703.1 mouse_genomes_project X 104486648 104516484 + 1700121L16Rik lincRNA lincRNA MGP_C57BL6NJ_T0096214.1 MGP_C57BL6NJ_G0036071.1 mouse_genomes_project X 8335888 8349080 + MGP_C57BL6NJ_P0096214 Ddx3x protein_coding protein_coding MGP_C57BL6NJ_T0096215.1 MGP_C57BL6NJ_G0036071.1 mouse_genomes_project X 8335940 8346941 + Ddx3x protein_coding processed_transcript MGP_C57BL6NJ_T0096216.1 MGP_C57BL6NJ_G0036071.1 mouse_genomes_project X 8335950 8342791 + Ddx3x protein_coding retained_intron MGP_C57BL6NJ_T0096217.1 MGP_C57BL6NJ_G0036071.1 mouse_genomes_project X 8342202 8343771 + Ddx3x protein_coding retained_intron MGP_C57BL6NJ_T0096218.1 MGP_C57BL6NJ_G0036071.1 mouse_genomes_project X 8342703 8344834 + Ddx3x protein_coding retained_intron MGP_C57BL6NJ_T0017022.1 MGP_C57BL6NJ_G0015067.1 mouse_genomes_project X 94000638 94002054 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096181.1 MGP_C57BL6NJ_G0036063.1 mouse_genomes_project X 5082745 5158956 + MGP_C57BL6NJ_P0096181 Otc protein_coding protein_coding MGP_C57BL6NJ_T0096182.1 MGP_C57BL6NJ_G0036063.1 mouse_genomes_project X 5082807 5151963 + MGP_C57BL6NJ_P0096182 Otc protein_coding protein_coding MGP_C57BL6NJ_T0012046.1 MGP_C57BL6NJ_G0010131.1 mouse_genomes_project X 146412627 146412949 + Gm26024 misc_RNA misc_RNA MGP_C57BL6NJ_T0102065.1 MGP_C57BL6NJ_G0040111.1 mouse_genomes_project X 66089509 66089635 + Gm22332 snoRNA snoRNA MGP_C57BL6NJ_T0098274.1 MGP_C57BL6NJ_G0036667.1 mouse_genomes_project X 153031572 153041386 - MGP_C57BL6NJ_P0098274 Tsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098275.1 MGP_C57BL6NJ_G0036667.1 mouse_genomes_project X 153031573 153041386 - MGP_C57BL6NJ_P0098275 Tsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098276.1 MGP_C57BL6NJ_G0036667.1 mouse_genomes_project X 153033959 153041386 - MGP_C57BL6NJ_P0098276 Tsr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098277.1 MGP_C57BL6NJ_G0036667.1 mouse_genomes_project X 153034170 153041366 - Tsr2 protein_coding processed_transcript MGP_C57BL6NJ_T0097258.1 MGP_C57BL6NJ_G0036372.1 mouse_genomes_project X 76266395 76281368 - MGP_C57BL6NJ_P0097258 Obp1a protein_coding protein_coding MGP_C57BL6NJ_T0100803.1 MGP_C57BL6NJ_G0038849.1 mouse_genomes_project X 104700982 104701093 - Gm22090 snRNA snRNA MGP_C57BL6NJ_T0097880.1 MGP_C57BL6NJ_G0036558.1 mouse_genomes_project X 135215387 135237665 + MGP_C57BL6NJ_P0097880 Arl13a protein_coding protein_coding MGP_C57BL6NJ_T0016730.1 MGP_C57BL6NJ_G0014775.1 mouse_genomes_project X 18782420 18782870 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009580.1 MGP_C57BL6NJ_G0007689.1 mouse_genomes_project X 79414441 79416842 - Gm26775 lincRNA lincRNA MGP_C57BL6NJ_T0096449.1 MGP_C57BL6NJ_G0036164.1 mouse_genomes_project X 34022130 34042688 + MGP_C57BL6NJ_P0096449 Atp1b4 protein_coding protein_coding MGP_C57BL6NJ_T0096450.1 MGP_C57BL6NJ_G0036164.1 mouse_genomes_project X 34022130 34042688 + MGP_C57BL6NJ_P0096450 Atp1b4 protein_coding protein_coding MGP_C57BL6NJ_T0096522.1 MGP_C57BL6NJ_G0036178.1 mouse_genomes_project X 40348867 40351752 - MGP_C57BL6NJ_P0096522 Dcaf12l2 protein_coding protein_coding MGP_C57BL6NJ_T0100818.1 MGP_C57BL6NJ_G0038864.1 mouse_genomes_project X 135558037 135558144 + Gm23124 snRNA snRNA MGP_C57BL6NJ_T0103566.1 MGP_C57BL6NJ_G0041358.1 mouse_genomes_project X 3877450 3877963 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005737.1 MGP_C57BL6NJ_G0004831.1 mouse_genomes_project X 32483043 32484195 + Gm15008 antisense antisense MGP_C57BL6NJ_T0100806.1 MGP_C57BL6NJ_G0038852.1 mouse_genomes_project X 106409920 106410082 - Gm24622 snRNA snRNA MGP_C57BL6NJ_T0096649.1 MGP_C57BL6NJ_G0036221.1 mouse_genomes_project X 49675349 49707893 + MGP_C57BL6NJ_P0096649 Fam122c protein_coding protein_coding MGP_C57BL6NJ_T0096650.1 MGP_C57BL6NJ_G0036221.1 mouse_genomes_project X 49675349 49739750 + MGP_C57BL6NJ_P0096650 Fam122c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096651.1 MGP_C57BL6NJ_G0036221.1 mouse_genomes_project X 49675358 49739750 + MGP_C57BL6NJ_P0096651 Fam122c protein_coding protein_coding MGP_C57BL6NJ_T0097135.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72337067 72340023 - MGP_C57BL6NJ_P0097135 Ubl4a protein_coding protein_coding MGP_C57BL6NJ_T0097136.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72337068 72339908 - Ubl4a protein_coding processed_transcript MGP_C57BL6NJ_T0097137.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72338621 72339816 - MGP_C57BL6NJ_P0097137 Ubl4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097138.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72338659 72339846 - Ubl4a protein_coding retained_intron MGP_C57BL6NJ_T0097139.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72338814 72344564 - MGP_C57BL6NJ_P0097139 Ubl4a protein_coding protein_coding MGP_C57BL6NJ_T0097140.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72339092 72339863 - Ubl4a protein_coding retained_intron MGP_C57BL6NJ_T0097141.1 MGP_C57BL6NJ_G0036340.1 mouse_genomes_project X 72339146 72339853 - Ubl4a protein_coding processed_transcript MGP_C57BL6NJ_T0102110.1 MGP_C57BL6NJ_G0040156.1 mouse_genomes_project X 167123081 167123211 + Gm22023 snoRNA snoRNA MGP_C57BL6NJ_T0100802.1 MGP_C57BL6NJ_G0038848.1 mouse_genomes_project X 103644567 103644674 - Gm23378 snRNA snRNA MGP_C57BL6NJ_T0016772.1 MGP_C57BL6NJ_G0014817.1 mouse_genomes_project X 41447682 41448837 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096281.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15908640 15950639 + MGP_C57BL6NJ_P0096281 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0096282.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15908759 15950652 + MGP_C57BL6NJ_P0096282 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0096283.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15908920 15950652 + MGP_C57BL6NJ_P0096283 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0096284.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15908922 15948947 + Rbm10 protein_coding processed_transcript MGP_C57BL6NJ_T0096285.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15911235 15950435 + MGP_C57BL6NJ_P0096285 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0096286.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15911235 15950435 + MGP_C57BL6NJ_P0096286 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0096287.1 MGP_C57BL6NJ_G0036099.1 mouse_genomes_project X 15911235 15950435 + MGP_C57BL6NJ_P0096287 Rbm10 protein_coding protein_coding MGP_C57BL6NJ_T0098572.1 MGP_C57BL6NJ_G0036739.1 mouse_genomes_project X 167025274 167097216 - MGP_C57BL6NJ_P0098572 Bmx protein_coding protein_coding MGP_C57BL6NJ_T0098573.1 MGP_C57BL6NJ_G0036739.1 mouse_genomes_project X 167025787 167089391 - MGP_C57BL6NJ_P0098573 Bmx protein_coding protein_coding MGP_C57BL6NJ_T0097398.1 MGP_C57BL6NJ_G0036418.1 mouse_genomes_project X 94909364 94932844 - MGP_C57BL6NJ_P0097398 Zc4h2 protein_coding protein_coding MGP_C57BL6NJ_T0097399.1 MGP_C57BL6NJ_G0036418.1 mouse_genomes_project X 94909367 94932819 - MGP_C57BL6NJ_P0097399 Zc4h2 protein_coding protein_coding MGP_C57BL6NJ_T0097400.1 MGP_C57BL6NJ_G0036418.1 mouse_genomes_project X 94909370 94932945 - MGP_C57BL6NJ_P0097400 Zc4h2 protein_coding protein_coding MGP_C57BL6NJ_T0096302.1 MGP_C57BL6NJ_G0036102.1 mouse_genomes_project X 16005549 16024576 + MGP_C57BL6NJ_P0096302 Usp11 protein_coding protein_coding MGP_C57BL6NJ_T0096303.1 MGP_C57BL6NJ_G0036102.1 mouse_genomes_project X 16005577 16014797 + Usp11 protein_coding processed_transcript MGP_C57BL6NJ_T0096304.1 MGP_C57BL6NJ_G0036102.1 mouse_genomes_project X 16005603 16021722 + Usp11 protein_coding retained_intron MGP_C57BL6NJ_T0096305.1 MGP_C57BL6NJ_G0036102.1 mouse_genomes_project X 16013468 16024574 + Usp11 protein_coding retained_intron MGP_C57BL6NJ_T0097259.1 MGP_C57BL6NJ_G0036373.1 mouse_genomes_project X 76319007 76323447 + MGP_C57BL6NJ_P0097259 Gm5938 protein_coding protein_coding MGP_C57BL6NJ_T0097260.1 MGP_C57BL6NJ_G0036373.1 mouse_genomes_project X 76320372 76322514 + Gm5938 protein_coding retained_intron MGP_C57BL6NJ_T0017235.1 MGP_C57BL6NJ_G0015280.1 mouse_genomes_project X 138007189 138007596 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017311.1 MGP_C57BL6NJ_G0015356.1 mouse_genomes_project X 152932237 152932896 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017154.1 MGP_C57BL6NJ_G0015199.1 mouse_genomes_project X 115762370 115762760 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098138.1 MGP_C57BL6NJ_G0036639.1 mouse_genomes_project X 143746668 143761035 + MGP_C57BL6NJ_P0098138 Nxt2 protein_coding protein_coding MGP_C57BL6NJ_T0098139.1 MGP_C57BL6NJ_G0036639.1 mouse_genomes_project X 143750795 143753331 + Nxt2 protein_coding retained_intron MGP_C57BL6NJ_T0098140.1 MGP_C57BL6NJ_G0036639.1 mouse_genomes_project X 143750935 143761041 + MGP_C57BL6NJ_P0098140 Nxt2 protein_coding protein_coding MGP_C57BL6NJ_T0012036.1 MGP_C57BL6NJ_G0010121.1 mouse_genomes_project X 109002206 109002498 - Gm26415 misc_RNA misc_RNA MGP_C57BL6NJ_T0096763.1 MGP_C57BL6NJ_G0036269.1 mouse_genomes_project X 63695277 63696141 - MGP_C57BL6NJ_P0096763 4930447F04Rik protein_coding protein_coding MGP_C57BL6NJ_T0098605.1 MGP_C57BL6NJ_G0036749.1 mouse_genomes_project X 169095115 169114273 + MGP_C57BL6NJ_P0098605 Gemin8 protein_coding protein_coding MGP_C57BL6NJ_T0098606.1 MGP_C57BL6NJ_G0036749.1 mouse_genomes_project X 169095153 169114289 + MGP_C57BL6NJ_P0098606 Gemin8 protein_coding protein_coding MGP_C57BL6NJ_T0098607.1 MGP_C57BL6NJ_G0036749.1 mouse_genomes_project X 169102986 169105345 + MGP_C57BL6NJ_P0098607 Gemin8 protein_coding protein_coding MGP_C57BL6NJ_T0098608.1 MGP_C57BL6NJ_G0036749.1 mouse_genomes_project X 169103007 169113874 + MGP_C57BL6NJ_P0098608 Gemin8 protein_coding protein_coding MGP_C57BL6NJ_T0098365.1 MGP_C57BL6NJ_G0036684.1 mouse_genomes_project X 155293666 155307738 + MGP_C57BL6NJ_P0098365 Foxr2 protein_coding protein_coding MGP_C57BL6NJ_T0098366.1 MGP_C57BL6NJ_G0036684.1 mouse_genomes_project X 155301773 155307738 + MGP_C57BL6NJ_P0098366 Foxr2 protein_coding protein_coding MGP_C57BL6NJ_T0097183.1 MGP_C57BL6NJ_G0036350.1 mouse_genomes_project X 73049881 73050945 + MGP_C57BL6NJ_P0097183 protein_coding protein_coding MGP_C57BL6NJ_T0097571.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100844059 100854442 + MGP_C57BL6NJ_P0097571 protein_coding protein_coding MGP_C57BL6NJ_T0097572.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100844296 100865239 + MGP_C57BL6NJ_P0097572 protein_coding protein_coding MGP_C57BL6NJ_T0097573.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100844474 100857271 + protein_coding retained_intron MGP_C57BL6NJ_T0097574.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100857430 100859284 + protein_coding retained_intron MGP_C57BL6NJ_T0097575.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100858247 100864028 + protein_coding retained_intron MGP_C57BL6NJ_T0097576.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100859685 100863829 + protein_coding processed_transcript MGP_C57BL6NJ_T0097577.1 MGP_C57BL6NJ_G0036458.1 mouse_genomes_project X 100860775 100863944 + protein_coding retained_intron MGP_C57BL6NJ_T0096233.1 MGP_C57BL6NJ_G0036075.1 mouse_genomes_project X 8736612 8743212 + MGP_C57BL6NJ_P0096233 Gpr82 protein_coding protein_coding MGP_C57BL6NJ_T0016643.1 MGP_C57BL6NJ_G0014688.1 mouse_genomes_project X 287421 289232 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102101.1 MGP_C57BL6NJ_G0040147.1 mouse_genomes_project X 152714917 152715045 - Gm24907 snoRNA snoRNA MGP_C57BL6NJ_T0012024.1 MGP_C57BL6NJ_G0010109.1 mouse_genomes_project X 66210097 66210225 + Gm27838 misc_RNA misc_RNA MGP_C57BL6NJ_T0017290.1 MGP_C57BL6NJ_G0015335.1 mouse_genomes_project X 146858007 146858703 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096245.1 MGP_C57BL6NJ_G0036084.1 mouse_genomes_project X 11772395 11841269 + MGP_C57BL6NJ_P0096245 Maoa protein_coding protein_coding MGP_C57BL6NJ_T0100761.1 MGP_C57BL6NJ_G0038807.1 mouse_genomes_project X 9426427 9426618 - Gm25202 snRNA snRNA MGP_C57BL6NJ_T0098353.1 MGP_C57BL6NJ_G0036679.1 mouse_genomes_project X 154645503 154646139 + MGP_C57BL6NJ_P0098353 Cldn34a protein_coding protein_coding MGP_C57BL6NJ_T0016881.1 MGP_C57BL6NJ_G0014926.1 mouse_genomes_project X 68032331 68033279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017127.1 MGP_C57BL6NJ_G0015172.1 mouse_genomes_project X 110580732 110583361 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016663.1 MGP_C57BL6NJ_G0014708.1 mouse_genomes_project X 3688019 3689085 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096676.1 MGP_C57BL6NJ_G0036237.1 mouse_genomes_project X 53267545 53280103 - MGP_C57BL6NJ_P0096676 Mmgt1 protein_coding protein_coding MGP_C57BL6NJ_T0016651.1 MGP_C57BL6NJ_G0014696.1 mouse_genomes_project X 2234204 2234499 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019157.1 MGP_C57BL6NJ_G0016191.1 mouse_genomes_project X 165487818 165489354 - Gm15201 processed_transcript processed_transcript MGP_C57BL6NJ_T0017055.1 MGP_C57BL6NJ_G0015100.1 mouse_genomes_project X 100948579 100949840 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098591.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167819435 167865393 - MGP_C57BL6NJ_P0098591 Mospd2 protein_coding protein_coding MGP_C57BL6NJ_T0098592.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167819584 167865315 - MGP_C57BL6NJ_P0098592 Mospd2 protein_coding protein_coding MGP_C57BL6NJ_T0098593.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167821475 167865353 - MGP_C57BL6NJ_P0098593 Mospd2 protein_coding protein_coding MGP_C57BL6NJ_T0098594.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167839202 167865346 - Mospd2 protein_coding retained_intron MGP_C57BL6NJ_T0098595.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167839207 167865346 - Mospd2 protein_coding retained_intron MGP_C57BL6NJ_T0098596.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167844286 167865343 - Mospd2 protein_coding retained_intron MGP_C57BL6NJ_T0098597.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167848056 167865345 - Mospd2 protein_coding retained_intron MGP_C57BL6NJ_T0098598.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167848382 167865361 - Mospd2 protein_coding processed_transcript MGP_C57BL6NJ_T0098599.1 MGP_C57BL6NJ_G0036745.1 mouse_genomes_project X 167864678 167865340 - Mospd2 protein_coding retained_intron MGP_C57BL6NJ_T0016936.1 MGP_C57BL6NJ_G0014981.1 mouse_genomes_project X 76590814 76591882 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102354.1 MGP_C57BL6NJ_G0040300.1 mouse_genomes_project X 104627353 104627839 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0012035.1 MGP_C57BL6NJ_G0010120.1 mouse_genomes_project X 103250557 103250762 + Gm27321 misc_RNA misc_RNA MGP_C57BL6NJ_T0096384.1 MGP_C57BL6NJ_G0036129.1 mouse_genomes_project X 32285514 32324260 + MGP_C57BL6NJ_P0096384 Slc25a43 protein_coding protein_coding MGP_C57BL6NJ_T0096385.1 MGP_C57BL6NJ_G0036129.1 mouse_genomes_project X 32285566 32323343 + Slc25a43 protein_coding processed_transcript MGP_C57BL6NJ_T0017330.1 MGP_C57BL6NJ_G0015375.1 mouse_genomes_project X 157081241 157082227 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016773.1 MGP_C57BL6NJ_G0014818.1 mouse_genomes_project X 41599063 41601513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016897.1 MGP_C57BL6NJ_G0014942.1 mouse_genomes_project X 70464647 70464983 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016762.1 MGP_C57BL6NJ_G0014807.1 mouse_genomes_project X 38787115 38787506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019092.1 MGP_C57BL6NJ_G0016170.1 mouse_genomes_project X 49101375 49103406 - Kis2 processed_transcript processed_transcript MGP_C57BL6NJ_T0019093.1 MGP_C57BL6NJ_G0016170.1 mouse_genomes_project X 49101375 49103406 - Kis2 processed_transcript processed_transcript MGP_C57BL6NJ_T0019094.1 MGP_C57BL6NJ_G0016170.1 mouse_genomes_project X 49101375 49103406 - Kis2 processed_transcript processed_transcript MGP_C57BL6NJ_T0019095.1 MGP_C57BL6NJ_G0016170.1 mouse_genomes_project X 49101377 49103773 - Kis2 processed_transcript processed_transcript MGP_C57BL6NJ_T0096633.1 MGP_C57BL6NJ_G0036214.1 mouse_genomes_project X 48363968 48484076 - MGP_C57BL6NJ_P0096633 Gpc4 protein_coding protein_coding MGP_C57BL6NJ_T0103597.1 MGP_C57BL6NJ_G0041389.1 mouse_genomes_project X 88103607 88104661 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017289.1 MGP_C57BL6NJ_G0015334.1 mouse_genomes_project X 146825007 146825641 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016933.1 MGP_C57BL6NJ_G0014978.1 mouse_genomes_project X 76214070 76214316 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016971.1 MGP_C57BL6NJ_G0015016.1 mouse_genomes_project X 86787186 86787722 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096641.1 MGP_C57BL6NJ_G0036218.1 mouse_genomes_project X 49371703 49412935 + MGP_C57BL6NJ_P0096641 Hprt protein_coding protein_coding MGP_C57BL6NJ_T0012049.1 MGP_C57BL6NJ_G0010134.1 mouse_genomes_project X 165434829 165435130 + Gm22257 misc_RNA misc_RNA MGP_C57BL6NJ_T0100827.1 MGP_C57BL6NJ_G0038873.1 mouse_genomes_project X 157017319 157017427 + Gm22359 snRNA snRNA MGP_C57BL6NJ_T0016960.1 MGP_C57BL6NJ_G0015005.1 mouse_genomes_project X 84024888 84025214 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011466.1 MGP_C57BL6NJ_G0009551.1 mouse_genomes_project X 116223261 116223349 + Gm24683 miRNA miRNA MGP_C57BL6NJ_T0096691.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53564966 53673079 + MGP_C57BL6NJ_P0096691 protein_coding protein_coding MGP_C57BL6NJ_T0096692.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53567344 53673111 + MGP_C57BL6NJ_P0096692 protein_coding protein_coding MGP_C57BL6NJ_T0096693.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53582354 53697647 + MGP_C57BL6NJ_P0096693 protein_coding protein_coding MGP_C57BL6NJ_T0096694.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53606611 53607142 + MGP_C57BL6NJ_P0096694 protein_coding protein_coding MGP_C57BL6NJ_T0096695.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53659649 53673094 + MGP_C57BL6NJ_P0096695 protein_coding protein_coding MGP_C57BL6NJ_T0096696.1 MGP_C57BL6NJ_G0036241.1 mouse_genomes_project X 53663025 53673101 + MGP_C57BL6NJ_P0096696 protein_coding protein_coding MGP_C57BL6NJ_T0102059.1 MGP_C57BL6NJ_G0040105.1 mouse_genomes_project X 32662410 32662541 - Snora69 snoRNA snoRNA MGP_C57BL6NJ_T0096631.1 MGP_C57BL6NJ_G0036213.1 mouse_genomes_project X 48287378 48291456 - MGP_C57BL6NJ_P0096631 1700080O16Rik protein_coding protein_coding MGP_C57BL6NJ_T0096632.1 MGP_C57BL6NJ_G0036213.1 mouse_genomes_project X 48287575 48289731 - MGP_C57BL6NJ_P0096632 1700080O16Rik protein_coding protein_coding MGP_C57BL6NJ_T0017337.1 MGP_C57BL6NJ_G0015382.1 mouse_genomes_project X 157867529 157868417 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098532.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668280 165750181 + MGP_C57BL6NJ_P0098532 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0098533.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668287 165688404 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098534.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668287 165688079 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098535.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668647 165802763 + MGP_C57BL6NJ_P0098535 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0098536.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668674 165802946 + MGP_C57BL6NJ_P0098536 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0098537.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668811 165802939 + MGP_C57BL6NJ_P0098537 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0098538.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668827 165670613 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098539.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165668912 165802763 + MGP_C57BL6NJ_P0098539 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0098540.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165669213 165689275 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098541.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165697420 165706872 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098542.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165711312 165746846 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098543.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165711693 165711983 + Ctps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098545.1 MGP_C57BL6NJ_G0036728.1 mouse_genomes_project X 165740760 165801757 + MGP_C57BL6NJ_P0098545 Ctps2 protein_coding protein_coding MGP_C57BL6NJ_T0016665.1 MGP_C57BL6NJ_G0014710.1 mouse_genomes_project X 3759186 3759849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016890.1 MGP_C57BL6NJ_G0014935.1 mouse_genomes_project X 68264152 68264528 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103607.1 MGP_C57BL6NJ_G0041399.1 mouse_genomes_project X 106139774 106143518 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017234.1 MGP_C57BL6NJ_G0015279.1 mouse_genomes_project X 137875042 137875672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096698.1 MGP_C57BL6NJ_G0036243.1 mouse_genomes_project X 53755514 53759138 + MGP_C57BL6NJ_P0096698 Htatsf1 protein_coding protein_coding MGP_C57BL6NJ_T0096699.1 MGP_C57BL6NJ_G0036243.1 mouse_genomes_project X 53755546 53769115 + MGP_C57BL6NJ_P0096699 Htatsf1 protein_coding protein_coding MGP_C57BL6NJ_T0096700.1 MGP_C57BL6NJ_G0036243.1 mouse_genomes_project X 53755829 53759136 + Htatsf1 protein_coding retained_intron MGP_C57BL6NJ_T0098408.1 MGP_C57BL6NJ_G0036702.1 mouse_genomes_project X 159912973 159961858 - MGP_C57BL6NJ_P0098408 Sms protein_coding protein_coding MGP_C57BL6NJ_T0098409.1 MGP_C57BL6NJ_G0036702.1 mouse_genomes_project X 159914814 159961637 - MGP_C57BL6NJ_P0098409 Sms protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098410.1 MGP_C57BL6NJ_G0036702.1 mouse_genomes_project X 159924812 159929680 - Sms protein_coding retained_intron MGP_C57BL6NJ_T0098411.1 MGP_C57BL6NJ_G0036702.1 mouse_genomes_project X 159927692 159961615 - Sms protein_coding retained_intron MGP_C57BL6NJ_T0098412.1 MGP_C57BL6NJ_G0036702.1 mouse_genomes_project X 159934682 159960943 - MGP_C57BL6NJ_P0098412 Sms protein_coding protein_coding MGP_C57BL6NJ_T0097368.1 MGP_C57BL6NJ_G0036410.1 mouse_genomes_project X 93545325 93590252 + MGP_C57BL6NJ_P0097368 Apoo protein_coding protein_coding MGP_C57BL6NJ_T0097369.1 MGP_C57BL6NJ_G0036410.1 mouse_genomes_project X 93545325 93598359 + MGP_C57BL6NJ_P0097369 Apoo protein_coding protein_coding MGP_C57BL6NJ_T0096607.1 MGP_C57BL6NJ_G0036204.1 mouse_genomes_project X 46231971 46232901 - MGP_C57BL6NJ_P0096607 Olfr1323 protein_coding protein_coding MGP_C57BL6NJ_T0017348.1 MGP_C57BL6NJ_G0015393.1 mouse_genomes_project X 160137115 160137711 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098406.1 MGP_C57BL6NJ_G0036701.1 mouse_genomes_project X 159609915 159871906 - MGP_C57BL6NJ_P0098406 Phex protein_coding protein_coding MGP_C57BL6NJ_T0098407.1 MGP_C57BL6NJ_G0036701.1 mouse_genomes_project X 159675266 159872462 - MGP_C57BL6NJ_P0098407 Phex protein_coding protein_coding MGP_C57BL6NJ_T0011478.1 MGP_C57BL6NJ_G0009563.1 mouse_genomes_project X 148701339 148701444 + Gm22650 miRNA miRNA MGP_C57BL6NJ_T0016905.1 MGP_C57BL6NJ_G0014950.1 mouse_genomes_project X 72510254 72510839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098122.1 MGP_C57BL6NJ_G0036632.1 mouse_genomes_project X 142554338 142561865 - MGP_C57BL6NJ_P0098122 Psmd10 protein_coding protein_coding MGP_C57BL6NJ_T0017394.1 MGP_C57BL6NJ_G0015439.1 mouse_genomes_project X 169985894 169986429 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099280.1 MGP_C57BL6NJ_G0037344.1 mouse_genomes_project X 92695682 92695820 - Gm23557 scaRNA scaRNA MGP_C57BL6NJ_T0097246.1 MGP_C57BL6NJ_G0036364.1 mouse_genomes_project X 74491853 74492733 + MGP_C57BL6NJ_P0097246 protein_coding protein_coding MGP_C57BL6NJ_T0016682.1 MGP_C57BL6NJ_G0014727.1 mouse_genomes_project X 7455475 7455820 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100809.1 MGP_C57BL6NJ_G0038855.1 mouse_genomes_project X 108920692 108920799 - Gm25797 snRNA snRNA MGP_C57BL6NJ_T0017236.1 MGP_C57BL6NJ_G0015281.1 mouse_genomes_project X 138214411 138214869 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102348.1 MGP_C57BL6NJ_G0040297.1 mouse_genomes_project X 87804561 87805004 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102349.1 MGP_C57BL6NJ_G0040297.1 mouse_genomes_project X 87804614 87804821 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0005736.1 MGP_C57BL6NJ_G0004830.1 mouse_genomes_project X 32367540 32369921 + Gm14549 antisense antisense MGP_C57BL6NJ_T0011420.1 MGP_C57BL6NJ_G0009505.1 mouse_genomes_project X 64196577 64196642 - Mir742 miRNA miRNA MGP_C57BL6NJ_T0102099.1 MGP_C57BL6NJ_G0040145.1 mouse_genomes_project X 148695120 148695248 + Snora35 snoRNA snoRNA MGP_C57BL6NJ_T0016785.1 MGP_C57BL6NJ_G0014830.1 mouse_genomes_project X 45356574 45356974 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017338.1 MGP_C57BL6NJ_G0015383.1 mouse_genomes_project X 158299675 158300582 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017195.1 MGP_C57BL6NJ_G0015240.1 mouse_genomes_project X 128723001 128725796 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096337.1 MGP_C57BL6NJ_G0036110.1 mouse_genomes_project X 16413179 16419698 + MGP_C57BL6NJ_P0096337 Spaca5 protein_coding protein_coding MGP_C57BL6NJ_T0016796.1 MGP_C57BL6NJ_G0014841.1 mouse_genomes_project X 49146548 49146871 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016882.1 MGP_C57BL6NJ_G0014927.1 mouse_genomes_project X 68032355 68033279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098075.1 MGP_C57BL6NJ_G0036620.1 mouse_genomes_project X 141329188 141331993 - MGP_C57BL6NJ_P0098075 Ripply1 protein_coding protein_coding MGP_C57BL6NJ_T0016683.1 MGP_C57BL6NJ_G0014728.1 mouse_genomes_project X 7666500 7666860 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002620.1 MGP_C57BL6NJ_G0002507.1 mouse_genomes_project X 71291302 71292558 + TEC TEC MGP_C57BL6NJ_T0096667.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53128931 53183323 + Ddx26b protein_coding processed_transcript MGP_C57BL6NJ_T0096668.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53128951 53183322 + MGP_C57BL6NJ_P0096668 Ddx26b protein_coding protein_coding MGP_C57BL6NJ_T0096669.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53128954 53170661 + MGP_C57BL6NJ_P0096669 Ddx26b protein_coding protein_coding MGP_C57BL6NJ_T0096670.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53128959 53183326 + MGP_C57BL6NJ_P0096670 Ddx26b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096671.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53128959 53183323 + MGP_C57BL6NJ_P0096671 Ddx26b protein_coding protein_coding MGP_C57BL6NJ_T0096672.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53158750 53183321 + MGP_C57BL6NJ_P0096672 Ddx26b protein_coding protein_coding MGP_C57BL6NJ_T0096673.1 MGP_C57BL6NJ_G0036234.1 mouse_genomes_project X 53180569 53183168 + MGP_C57BL6NJ_P0096673 Ddx26b protein_coding protein_coding MGP_C57BL6NJ_T0011382.1 MGP_C57BL6NJ_G0009467.1 mouse_genomes_project X 8728575 8728644 + Gm25246 miRNA miRNA MGP_C57BL6NJ_T0098686.1 MGP_C57BL6NJ_G0036767.1 mouse_genomes_project X 173063709 173064018 - MGP_C57BL6NJ_P0098686 Gm21860 protein_coding protein_coding MGP_C57BL6NJ_T0097822.1 MGP_C57BL6NJ_G0036538.1 mouse_genomes_project X 116567442 116593467 + MGP_C57BL6NJ_P0097822 Cpxcr1 protein_coding protein_coding MGP_C57BL6NJ_T0002626.1 MGP_C57BL6NJ_G0002513.1 mouse_genomes_project X 154333303 154334780 - TEC TEC MGP_C57BL6NJ_T0097464.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99671401 + Eda protein_coding retained_intron MGP_C57BL6NJ_T0097465.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759944 + MGP_C57BL6NJ_P0097465 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097466.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759944 + MGP_C57BL6NJ_P0097466 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097467.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759946 + MGP_C57BL6NJ_P0097467 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097468.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759943 + MGP_C57BL6NJ_P0097468 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097469.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759944 + MGP_C57BL6NJ_P0097469 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097470.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759946 + MGP_C57BL6NJ_P0097470 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097471.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353716 99759943 + MGP_C57BL6NJ_P0097471 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097472.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353891 99754996 + MGP_C57BL6NJ_P0097472 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097473.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99353891 99756340 + MGP_C57BL6NJ_P0097473 Eda protein_coding protein_coding MGP_C57BL6NJ_T0097474.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99744296 99753622 + Eda protein_coding processed_transcript MGP_C57BL6NJ_T0097475.1 MGP_C57BL6NJ_G0036435.1 mouse_genomes_project X 99746438 99754220 + Eda protein_coding processed_transcript MGP_C57BL6NJ_T0096105.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2865194 2874701 - MGP_C57BL6NJ_P0096105 Wdr13 protein_coding protein_coding MGP_C57BL6NJ_T0096106.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2865196 2874751 - MGP_C57BL6NJ_P0096106 Wdr13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096107.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2865217 2874663 - MGP_C57BL6NJ_P0096107 Wdr13 protein_coding protein_coding MGP_C57BL6NJ_T0096108.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2867197 2874716 - MGP_C57BL6NJ_P0096108 Wdr13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096109.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2867301 2874713 - MGP_C57BL6NJ_P0096109 Wdr13 protein_coding protein_coding MGP_C57BL6NJ_T0096110.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2867594 2870411 - Wdr13 protein_coding retained_intron MGP_C57BL6NJ_T0096111.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2869927 2874712 - Wdr13 protein_coding processed_transcript MGP_C57BL6NJ_T0096112.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2871034 2874738 - MGP_C57BL6NJ_P0096112 Wdr13 protein_coding protein_coding MGP_C57BL6NJ_T0096113.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2871611 2874405 - Wdr13 protein_coding retained_intron MGP_C57BL6NJ_T0096114.1 MGP_C57BL6NJ_G0036038.1 mouse_genomes_project X 2874010 2874785 - Wdr13 protein_coding processed_transcript MGP_C57BL6NJ_T0017227.1 MGP_C57BL6NJ_G0015272.1 mouse_genomes_project X 137560547 137561197 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005766.1 MGP_C57BL6NJ_G0004856.1 mouse_genomes_project X 143249788 143251114 + Gm15295 antisense antisense MGP_C57BL6NJ_T0096666.1 MGP_C57BL6NJ_G0036233.1 mouse_genomes_project X 53121331 53122474 + MGP_C57BL6NJ_P0096666 protein_coding protein_coding MGP_C57BL6NJ_T0017280.1 MGP_C57BL6NJ_G0015325.1 mouse_genomes_project X 145787622 145788445 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017331.1 MGP_C57BL6NJ_G0015376.1 mouse_genomes_project X 157489209 157489569 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098544.1 MGP_C57BL6NJ_G0036729.1 mouse_genomes_project X 165733647 165736255 - MGP_C57BL6NJ_P0098544 S100g protein_coding protein_coding MGP_C57BL6NJ_T0096542.1 MGP_C57BL6NJ_G0036185.1 mouse_genomes_project X 44273192 44301448 + MGP_C57BL6NJ_P0096542 Xpnpep2 protein_coding protein_coding MGP_C57BL6NJ_T0096543.1 MGP_C57BL6NJ_G0036185.1 mouse_genomes_project X 44273386 44298492 + MGP_C57BL6NJ_P0096543 Xpnpep2 protein_coding protein_coding MGP_C57BL6NJ_T0096544.1 MGP_C57BL6NJ_G0036185.1 mouse_genomes_project X 44273388 44276622 + Xpnpep2 protein_coding processed_transcript MGP_C57BL6NJ_T0096545.1 MGP_C57BL6NJ_G0036185.1 mouse_genomes_project X 44273396 44301137 + MGP_C57BL6NJ_P0096545 Xpnpep2 protein_coding protein_coding MGP_C57BL6NJ_T0096546.1 MGP_C57BL6NJ_G0036185.1 mouse_genomes_project X 44292186 44295628 + Xpnpep2 protein_coding processed_transcript MGP_C57BL6NJ_T0017164.1 MGP_C57BL6NJ_G0015209.1 mouse_genomes_project X 118107616 118108071 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097804.1 MGP_C57BL6NJ_G0036532.1 mouse_genomes_project X 113025209 113211165 - MGP_C57BL6NJ_P0097804 Chm protein_coding protein_coding MGP_C57BL6NJ_T0097805.1 MGP_C57BL6NJ_G0036532.1 mouse_genomes_project X 113027797 113032203 - Chm protein_coding processed_transcript MGP_C57BL6NJ_T0097806.1 MGP_C57BL6NJ_G0036532.1 mouse_genomes_project X 113048648 113173443 - Chm protein_coding processed_transcript MGP_C57BL6NJ_T0097807.1 MGP_C57BL6NJ_G0036532.1 mouse_genomes_project X 113109641 113173443 - Chm protein_coding processed_transcript MGP_C57BL6NJ_T0099198.1 MGP_C57BL6NJ_G0037262.1 mouse_genomes_project X 81783168 81783285 + n-R5s9 rRNA rRNA MGP_C57BL6NJ_T0016889.1 MGP_C57BL6NJ_G0014934.1 mouse_genomes_project X 68235585 68236130 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102345.1 MGP_C57BL6NJ_G0040295.1 mouse_genomes_project X 50487150 50487386 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0009616.1 MGP_C57BL6NJ_G0007711.1 mouse_genomes_project X 141756230 141857346 - Gm15046 lincRNA lincRNA MGP_C57BL6NJ_T0097119.1 MGP_C57BL6NJ_G0036337.1 mouse_genomes_project X 72274976 72282819 + MGP_C57BL6NJ_P0097119 Fam50a protein_coding protein_coding MGP_C57BL6NJ_T0097120.1 MGP_C57BL6NJ_G0036337.1 mouse_genomes_project X 72275069 72282804 + Fam50a protein_coding retained_intron MGP_C57BL6NJ_T0097121.1 MGP_C57BL6NJ_G0036337.1 mouse_genomes_project X 72280112 72280610 + Fam50a protein_coding retained_intron MGP_C57BL6NJ_T0016901.1 MGP_C57BL6NJ_G0014946.1 mouse_genomes_project X 72237863 72238079 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096344.1 MGP_C57BL6NJ_G0036113.1 mouse_genomes_project X 16537246 16538461 - MGP_C57BL6NJ_P0096344 Gm21876 protein_coding protein_coding MGP_C57BL6NJ_T0096206.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8119130 8175938 + MGP_C57BL6NJ_P0096206 Usp9x protein_coding protein_coding MGP_C57BL6NJ_T0096207.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8119146 8174650 + Usp9x protein_coding retained_intron MGP_C57BL6NJ_T0096208.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8119146 8232324 + MGP_C57BL6NJ_P0096208 Usp9x protein_coding protein_coding MGP_C57BL6NJ_T0096209.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8119817 8233283 + MGP_C57BL6NJ_P0096209 Usp9x protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096210.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8166171 8175722 + MGP_C57BL6NJ_P0096210 Usp9x protein_coding protein_coding MGP_C57BL6NJ_T0096211.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8181547 8185058 + Usp9x protein_coding retained_intron MGP_C57BL6NJ_T0096212.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8181814 8186270 + Usp9x protein_coding retained_intron MGP_C57BL6NJ_T0096213.1 MGP_C57BL6NJ_G0036070.1 mouse_genomes_project X 8218219 8232211 + MGP_C57BL6NJ_P0096213 Usp9x protein_coding protein_coding MGP_C57BL6NJ_T0016893.1 MGP_C57BL6NJ_G0014938.1 mouse_genomes_project X 68649942 68650573 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096355.1 MGP_C57BL6NJ_G0036118.1 mouse_genomes_project X 19078469 19238346 + MGP_C57BL6NJ_P0096355 Wdr44 protein_coding protein_coding MGP_C57BL6NJ_T0096356.1 MGP_C57BL6NJ_G0036118.1 mouse_genomes_project X 19078495 19170762 + Wdr44 protein_coding retained_intron MGP_C57BL6NJ_T0096357.1 MGP_C57BL6NJ_G0036118.1 mouse_genomes_project X 19078514 19238381 + MGP_C57BL6NJ_P0096357 Wdr44 protein_coding protein_coding MGP_C57BL6NJ_T0096358.1 MGP_C57BL6NJ_G0036118.1 mouse_genomes_project X 19078577 19176092 + MGP_C57BL6NJ_P0096358 Wdr44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096359.1 MGP_C57BL6NJ_G0036118.1 mouse_genomes_project X 19194865 19200906 + Wdr44 protein_coding retained_intron MGP_C57BL6NJ_T0016759.1 MGP_C57BL6NJ_G0014804.1 mouse_genomes_project X 37792329 37792902 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016904.1 MGP_C57BL6NJ_G0014949.1 mouse_genomes_project X 72505552 72505940 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005728.1 MGP_C57BL6NJ_G0004827.1 mouse_genomes_project X 2768153 2799204 + Gm14820 antisense antisense MGP_C57BL6NJ_T0005729.1 MGP_C57BL6NJ_G0004827.1 mouse_genomes_project X 2773308 2786794 + Gm14820 antisense antisense MGP_C57BL6NJ_T0005730.1 MGP_C57BL6NJ_G0004827.1 mouse_genomes_project X 2773384 2799922 + Gm14820 antisense antisense MGP_C57BL6NJ_T0005731.1 MGP_C57BL6NJ_G0004827.1 mouse_genomes_project X 2773464 2801582 + Gm14820 antisense antisense MGP_C57BL6NJ_T0005732.1 MGP_C57BL6NJ_G0004827.1 mouse_genomes_project X 2775727 2799919 + Gm14820 antisense antisense MGP_C57BL6NJ_T0017062.1 MGP_C57BL6NJ_G0015107.1 mouse_genomes_project X 101690696 101691160 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016876.1 MGP_C57BL6NJ_G0014921.1 mouse_genomes_project X 66141281 66141629 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009558.1 MGP_C57BL6NJ_G0007673.1 mouse_genomes_project X 11041147 11053333 - Drr1 lincRNA lincRNA MGP_C57BL6NJ_T0009559.1 MGP_C57BL6NJ_G0007673.1 mouse_genomes_project X 11041147 11043821 - Drr1 lincRNA lincRNA MGP_C57BL6NJ_T0016739.1 MGP_C57BL6NJ_G0014784.1 mouse_genomes_project X 32609606 32611686 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016849.1 MGP_C57BL6NJ_G0014894.1 mouse_genomes_project X 59758909 59759395 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016853.1 MGP_C57BL6NJ_G0014898.1 mouse_genomes_project X 60598192 60598494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096598.1 MGP_C57BL6NJ_G0036200.1 mouse_genomes_project X 45893828 45894788 + MGP_C57BL6NJ_P0096598 Olfr1320 protein_coding protein_coding MGP_C57BL6NJ_T0098142.1 MGP_C57BL6NJ_G0036641.1 mouse_genomes_project X 143832722 143910594 - MGP_C57BL6NJ_P0098142 Acsl4 protein_coding protein_coding MGP_C57BL6NJ_T0098143.1 MGP_C57BL6NJ_G0036641.1 mouse_genomes_project X 143835393 143844385 - Acsl4 protein_coding processed_transcript MGP_C57BL6NJ_T0098144.1 MGP_C57BL6NJ_G0036641.1 mouse_genomes_project X 143835399 143910572 - MGP_C57BL6NJ_P0098144 Acsl4 protein_coding protein_coding MGP_C57BL6NJ_T0011376.1 MGP_C57BL6NJ_G0009461.1 mouse_genomes_project X 1906420 1906529 - Mir501 miRNA miRNA MGP_C57BL6NJ_T0016983.1 MGP_C57BL6NJ_G0015028.1 mouse_genomes_project X 87912715 87914195 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017274.1 MGP_C57BL6NJ_G0015319.1 mouse_genomes_project X 143950280 143950490 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100786.1 MGP_C57BL6NJ_G0038832.1 mouse_genomes_project X 57113731 57113838 + Gm22287 snRNA snRNA MGP_C57BL6NJ_T0098364.1 MGP_C57BL6NJ_G0036683.1 mouse_genomes_project X 155207368 155208778 - MGP_C57BL6NJ_P0098364 Mageh1 protein_coding protein_coding MGP_C57BL6NJ_T0098566.1 MGP_C57BL6NJ_G0036737.1 mouse_genomes_project X 166918509 166950193 + MGP_C57BL6NJ_P0098566 Tmem27 protein_coding protein_coding MGP_C57BL6NJ_T0098567.1 MGP_C57BL6NJ_G0036737.1 mouse_genomes_project X 166919866 166950192 + MGP_C57BL6NJ_P0098567 Tmem27 protein_coding protein_coding MGP_C57BL6NJ_T0098568.1 MGP_C57BL6NJ_G0036737.1 mouse_genomes_project X 166921868 166949547 + MGP_C57BL6NJ_P0098568 Tmem27 protein_coding protein_coding MGP_C57BL6NJ_T0011432.1 MGP_C57BL6NJ_G0009517.1 mouse_genomes_project X 64246460 64246541 - Mir465c-1 miRNA miRNA MGP_C57BL6NJ_T0011388.1 MGP_C57BL6NJ_G0009473.1 mouse_genomes_project X 19421898 19422000 + Gm25299 miRNA miRNA MGP_C57BL6NJ_T0016878.1 MGP_C57BL6NJ_G0014923.1 mouse_genomes_project X 66323404 66323632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017043.1 MGP_C57BL6NJ_G0015088.1 mouse_genomes_project X 97861590 97862076 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098056.1 MGP_C57BL6NJ_G0036613.1 mouse_genomes_project X 140696470 140698252 + MGP_C57BL6NJ_P0098056 4933428M09Rik protein_coding protein_coding MGP_C57BL6NJ_T0016966.1 MGP_C57BL6NJ_G0015011.1 mouse_genomes_project X 84864479 84908370 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100808.1 MGP_C57BL6NJ_G0038854.1 mouse_genomes_project X 108906993 108907160 - Gm23322 snRNA snRNA MGP_C57BL6NJ_T0017103.1 MGP_C57BL6NJ_G0015148.1 mouse_genomes_project X 105424111 105424498 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099189.1 MGP_C57BL6NJ_G0037253.1 mouse_genomes_project X 746972 747091 + n-R5s2 rRNA rRNA MGP_C57BL6NJ_T0005750.1 MGP_C57BL6NJ_G0004842.1 mouse_genomes_project X 69129892 69160439 + Gm16189 antisense antisense MGP_C57BL6NJ_T0017041.1 MGP_C57BL6NJ_G0015086.1 mouse_genomes_project X 97799302 97799510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016838.1 MGP_C57BL6NJ_G0014883.1 mouse_genomes_project X 58323945 58324502 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096168.1 MGP_C57BL6NJ_G0036061.1 mouse_genomes_project X 4850622 4933326 - MGP_C57BL6NJ_P0096168 Srpx protein_coding protein_coding MGP_C57BL6NJ_T0096169.1 MGP_C57BL6NJ_G0036061.1 mouse_genomes_project X 4851201 4933353 - MGP_C57BL6NJ_P0096169 Srpx protein_coding protein_coding MGP_C57BL6NJ_T0096170.1 MGP_C57BL6NJ_G0036061.1 mouse_genomes_project X 4851552 4933249 - MGP_C57BL6NJ_P0096170 Srpx protein_coding protein_coding MGP_C57BL6NJ_T0096171.1 MGP_C57BL6NJ_G0036061.1 mouse_genomes_project X 4887356 4933320 - Srpx protein_coding processed_transcript MGP_C57BL6NJ_T0016841.1 MGP_C57BL6NJ_G0014886.1 mouse_genomes_project X 58570960 58571538 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016806.1 MGP_C57BL6NJ_G0014851.1 mouse_genomes_project X 50480402 50481305 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100793.1 MGP_C57BL6NJ_G0038839.1 mouse_genomes_project X 75766367 75766540 + Gm23121 snRNA snRNA MGP_C57BL6NJ_T0017074.1 MGP_C57BL6NJ_G0015119.1 mouse_genomes_project X 102817601 102818120 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016716.1 MGP_C57BL6NJ_G0014761.1 mouse_genomes_project X 15671896 15673580 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016850.1 MGP_C57BL6NJ_G0014895.1 mouse_genomes_project X 59998903 59999167 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017297.1 MGP_C57BL6NJ_G0015342.1 mouse_genomes_project X 147689920 147690287 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097756.1 MGP_C57BL6NJ_G0036514.1 mouse_genomes_project X 107831589 107834291 - MGP_C57BL6NJ_P0097756 Gm732 protein_coding protein_coding MGP_C57BL6NJ_T0097757.1 MGP_C57BL6NJ_G0036514.1 mouse_genomes_project X 107832730 107834320 - MGP_C57BL6NJ_P0097757 Gm732 protein_coding protein_coding MGP_C57BL6NJ_T0097873.1 MGP_C57BL6NJ_G0036556.1 mouse_genomes_project X 135098656 135132104 - MGP_C57BL6NJ_P0097873 Nox1 protein_coding protein_coding MGP_C57BL6NJ_T0097874.1 MGP_C57BL6NJ_G0036556.1 mouse_genomes_project X 135099286 135132015 - MGP_C57BL6NJ_P0097874 Nox1 protein_coding protein_coding MGP_C57BL6NJ_T0097875.1 MGP_C57BL6NJ_G0036556.1 mouse_genomes_project X 135099378 135131958 - MGP_C57BL6NJ_P0097875 Nox1 protein_coding protein_coding MGP_C57BL6NJ_T0097876.1 MGP_C57BL6NJ_G0036556.1 mouse_genomes_project X 135125957 135253930 - MGP_C57BL6NJ_P0097876 Nox1 protein_coding protein_coding MGP_C57BL6NJ_T0097877.1 MGP_C57BL6NJ_G0036556.1 mouse_genomes_project X 135125957 135159236 - MGP_C57BL6NJ_P0097877 Nox1 protein_coding protein_coding MGP_C57BL6NJ_T0005774.1 MGP_C57BL6NJ_G0004860.1 mouse_genomes_project X 160256268 160289166 - Gm15169 antisense antisense MGP_C57BL6NJ_T0005775.1 MGP_C57BL6NJ_G0004860.1 mouse_genomes_project X 160275851 160289159 - Gm15169 antisense antisense MGP_C57BL6NJ_T0016855.1 MGP_C57BL6NJ_G0014900.1 mouse_genomes_project X 62078411 62079269 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098027.1 MGP_C57BL6NJ_G0036605.1 mouse_genomes_project X 138340083 138344327 + MGP_C57BL6NJ_P0098027 Zcchc18 protein_coding protein_coding MGP_C57BL6NJ_T0098028.1 MGP_C57BL6NJ_G0036605.1 mouse_genomes_project X 138340087 138344065 + MGP_C57BL6NJ_P0098028 Zcchc18 protein_coding protein_coding MGP_C57BL6NJ_T0098029.1 MGP_C57BL6NJ_G0036605.1 mouse_genomes_project X 138340226 138346421 + MGP_C57BL6NJ_P0098029 Zcchc18 protein_coding protein_coding MGP_C57BL6NJ_T0017177.1 MGP_C57BL6NJ_G0015222.1 mouse_genomes_project X 120839901 120840553 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098096.1 MGP_C57BL6NJ_G0036624.1 mouse_genomes_project X 141570712 141632421 - MGP_C57BL6NJ_P0098096 Nup62cl protein_coding protein_coding MGP_C57BL6NJ_T0098097.1 MGP_C57BL6NJ_G0036624.1 mouse_genomes_project X 141587239 141632146 - MGP_C57BL6NJ_P0098097 Nup62cl protein_coding protein_coding MGP_C57BL6NJ_T0098098.1 MGP_C57BL6NJ_G0036624.1 mouse_genomes_project X 141592786 141632565 - MGP_C57BL6NJ_P0098098 Nup62cl protein_coding protein_coding MGP_C57BL6NJ_T0098099.1 MGP_C57BL6NJ_G0036624.1 mouse_genomes_project X 141593386 141632433 - MGP_C57BL6NJ_P0098099 Nup62cl protein_coding protein_coding MGP_C57BL6NJ_T0098100.1 MGP_C57BL6NJ_G0036624.1 mouse_genomes_project X 141599967 141632404 - MGP_C57BL6NJ_P0098100 Nup62cl protein_coding protein_coding MGP_C57BL6NJ_T0016978.1 MGP_C57BL6NJ_G0015023.1 mouse_genomes_project X 87549595 87550717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016968.1 MGP_C57BL6NJ_G0015013.1 mouse_genomes_project X 85487441 85487751 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016931.1 MGP_C57BL6NJ_G0014976.1 mouse_genomes_project X 75901182 75902138 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016740.1 MGP_C57BL6NJ_G0014785.1 mouse_genomes_project X 34539114 34539408 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005740.1 MGP_C57BL6NJ_G0004834.1 mouse_genomes_project X 48631678 48671955 + Gm14582 antisense antisense MGP_C57BL6NJ_T0103581.1 MGP_C57BL6NJ_G0041373.1 mouse_genomes_project X 72813536 72814600 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097654.1 MGP_C57BL6NJ_G0036485.1 mouse_genomes_project X 103598389 103623035 - MGP_C57BL6NJ_P0097654 Rlim protein_coding protein_coding MGP_C57BL6NJ_T0097655.1 MGP_C57BL6NJ_G0036485.1 mouse_genomes_project X 103598389 103623035 - MGP_C57BL6NJ_P0097655 Rlim protein_coding protein_coding MGP_C57BL6NJ_T0097656.1 MGP_C57BL6NJ_G0036485.1 mouse_genomes_project X 103619545 103623035 - Rlim protein_coding retained_intron MGP_C57BL6NJ_T0016821.1 MGP_C57BL6NJ_G0014866.1 mouse_genomes_project X 55187433 55187850 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016797.1 MGP_C57BL6NJ_G0014842.1 mouse_genomes_project X 49247912 49248403 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096799.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68881628 68997275 + MGP_C57BL6NJ_P0096799 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096800.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885810 68997275 + MGP_C57BL6NJ_P0096800 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096801.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885810 68997275 + MGP_C57BL6NJ_P0096801 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096802.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885810 68936598 + MGP_C57BL6NJ_P0096802 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096803.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885832 68997268 + MGP_C57BL6NJ_P0096803 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096804.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885835 68980841 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0096805.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885840 68978994 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0096806.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885843 68997245 + MGP_C57BL6NJ_P0096806 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096807.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885863 68992291 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0096808.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885886 68997245 + MGP_C57BL6NJ_P0096808 Mtm1 protein_coding protein_coding MGP_C57BL6NJ_T0096809.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885889 68908782 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0096810.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68885889 68929648 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0096811.1 MGP_C57BL6NJ_G0036281.1 mouse_genomes_project X 68983348 68997671 + Mtm1 protein_coding retained_intron MGP_C57BL6NJ_T0102085.1 MGP_C57BL6NJ_G0040131.1 mouse_genomes_project X 116892106 116892221 + Gm24438 snoRNA snoRNA MGP_C57BL6NJ_T0096427.1 MGP_C57BL6NJ_G0036152.1 mouse_genomes_project X 33517726 33521764 - MGP_C57BL6NJ_P0096427 Rhox8 protein_coding protein_coding MGP_C57BL6NJ_T0096840.1 MGP_C57BL6NJ_G0036289.1 mouse_genomes_project X 69702749 69718809 + MGP_C57BL6NJ_P0096840 Fate1 protein_coding protein_coding MGP_C57BL6NJ_T0096841.1 MGP_C57BL6NJ_G0036289.1 mouse_genomes_project X 69711286 69718809 + MGP_C57BL6NJ_P0096841 Fate1 protein_coding protein_coding MGP_C57BL6NJ_T0096842.1 MGP_C57BL6NJ_G0036289.1 mouse_genomes_project X 69712967 69718531 + Fate1 protein_coding processed_transcript MGP_C57BL6NJ_T0097670.1 MGP_C57BL6NJ_G0036494.1 mouse_genomes_project X 105453501 105464077 + MGP_C57BL6NJ_P0097670 Fgf16 protein_coding protein_coding MGP_C57BL6NJ_T0097404.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95220319 95244302 - MGP_C57BL6NJ_P0097404 Las1l protein_coding protein_coding MGP_C57BL6NJ_T0097405.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95220319 95244302 - MGP_C57BL6NJ_P0097405 Las1l protein_coding protein_coding MGP_C57BL6NJ_T0097406.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95225675 95244275 - Las1l protein_coding retained_intron MGP_C57BL6NJ_T0097407.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95225808 95234749 - Las1l protein_coding processed_transcript MGP_C57BL6NJ_T0097408.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95233715 95235497 - Las1l protein_coding processed_transcript MGP_C57BL6NJ_T0097409.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95234230 95238352 - Las1l protein_coding processed_transcript MGP_C57BL6NJ_T0097410.1 MGP_C57BL6NJ_G0036420.1 mouse_genomes_project X 95236728 95244351 - Las1l protein_coding retained_intron MGP_C57BL6NJ_T0016710.1 MGP_C57BL6NJ_G0014755.1 mouse_genomes_project X 14969410 14969807 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097648.1 MGP_C57BL6NJ_G0036481.1 mouse_genomes_project X 103026932 103037529 + MGP_C57BL6NJ_P0097648 Tsx protein_coding protein_coding MGP_C57BL6NJ_T0096424.1 MGP_C57BL6NJ_G0036150.1 mouse_genomes_project X 33391999 33392623 - MGP_C57BL6NJ_P0096424 Rhox2a protein_coding protein_coding MGP_C57BL6NJ_T0017244.1 MGP_C57BL6NJ_G0015289.1 mouse_genomes_project X 138607042 138609648 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097727.1 MGP_C57BL6NJ_G0036506.1 mouse_genomes_project X 106747935 106763839 + MGP_C57BL6NJ_P0097727 Lpar4 protein_coding protein_coding MGP_C57BL6NJ_T0096399.1 MGP_C57BL6NJ_G0036134.1 mouse_genomes_project X 32483535 32564102 - MGP_C57BL6NJ_P0096399 Sept6 protein_coding protein_coding MGP_C57BL6NJ_T0096400.1 MGP_C57BL6NJ_G0036134.1 mouse_genomes_project X 32485655 32564102 - MGP_C57BL6NJ_P0096400 Sept6 protein_coding protein_coding MGP_C57BL6NJ_T0096401.1 MGP_C57BL6NJ_G0036134.1 mouse_genomes_project X 32487240 32564102 - MGP_C57BL6NJ_P0096401 Sept6 protein_coding protein_coding MGP_C57BL6NJ_T0096402.1 MGP_C57BL6NJ_G0036134.1 mouse_genomes_project X 32541043 32566196 - MGP_C57BL6NJ_P0096402 Sept6 protein_coding protein_coding MGP_C57BL6NJ_T0096403.1 MGP_C57BL6NJ_G0036134.1 mouse_genomes_project X 32546349 32563937 - Sept6 protein_coding retained_intron MGP_C57BL6NJ_T0016758.1 MGP_C57BL6NJ_G0014803.1 mouse_genomes_project X 37785490 37786156 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097745.1 MGP_C57BL6NJ_G0036511.1 mouse_genomes_project X 107544736 107567575 + MGP_C57BL6NJ_P0097745 Tbx22 protein_coding protein_coding MGP_C57BL6NJ_T0097746.1 MGP_C57BL6NJ_G0036511.1 mouse_genomes_project X 107544736 107557946 + MGP_C57BL6NJ_P0097746 Tbx22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097747.1 MGP_C57BL6NJ_G0036511.1 mouse_genomes_project X 107553284 107564204 + MGP_C57BL6NJ_P0097747 Tbx22 protein_coding protein_coding MGP_C57BL6NJ_T0097748.1 MGP_C57BL6NJ_G0036511.1 mouse_genomes_project X 107555735 107567578 + MGP_C57BL6NJ_P0097748 Tbx22 protein_coding protein_coding MGP_C57BL6NJ_T0097749.1 MGP_C57BL6NJ_G0036511.1 mouse_genomes_project X 107555787 107564929 + MGP_C57BL6NJ_P0097749 Tbx22 protein_coding protein_coding MGP_C57BL6NJ_T0017321.1 MGP_C57BL6NJ_G0015366.1 mouse_genomes_project X 155054441 155056157 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099207.1 MGP_C57BL6NJ_G0037271.1 mouse_genomes_project X 164976798 164976926 + Gm27490 rRNA rRNA MGP_C57BL6NJ_T0098046.1 MGP_C57BL6NJ_G0036609.1 mouse_genomes_project X 139670807 139672223 - MGP_C57BL6NJ_P0098046 Tex13a protein_coding protein_coding MGP_C57BL6NJ_T0097820.1 MGP_C57BL6NJ_G0036536.1 mouse_genomes_project X 114950855 114951784 + MGP_C57BL6NJ_P0097820 Ube2dnl2 protein_coding protein_coding MGP_C57BL6NJ_T0017106.1 MGP_C57BL6NJ_G0015151.1 mouse_genomes_project X 106435646 106436519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096398.1 MGP_C57BL6NJ_G0036133.1 mouse_genomes_project X 32458774 32474141 - MGP_C57BL6NJ_P0096398 Nkrf protein_coding protein_coding MGP_C57BL6NJ_T0016784.1 MGP_C57BL6NJ_G0014829.1 mouse_genomes_project X 45350547 45350896 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096852.1 MGP_C57BL6NJ_G0036295.1 mouse_genomes_project X 70603683 70621106 + MGP_C57BL6NJ_P0096852 Gabrq protein_coding protein_coding MGP_C57BL6NJ_T0096853.1 MGP_C57BL6NJ_G0036295.1 mouse_genomes_project X 70603941 70617048 + MGP_C57BL6NJ_P0096853 Gabrq protein_coding protein_coding MGP_C57BL6NJ_T0016745.1 MGP_C57BL6NJ_G0014790.1 mouse_genomes_project X 35234494 35234901 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096523.1 MGP_C57BL6NJ_G0036179.1 mouse_genomes_project X 40795356 40798984 - MGP_C57BL6NJ_P0096523 Dcaf12l1 protein_coding protein_coding MGP_C57BL6NJ_T0096524.1 MGP_C57BL6NJ_G0036179.1 mouse_genomes_project X 40795356 40798948 - MGP_C57BL6NJ_P0096524 Dcaf12l1 protein_coding protein_coding MGP_C57BL6NJ_T0096797.1 MGP_C57BL6NJ_G0036280.1 mouse_genomes_project X 68720928 68826900 + MGP_C57BL6NJ_P0096797 Mamld1 protein_coding protein_coding MGP_C57BL6NJ_T0096798.1 MGP_C57BL6NJ_G0036280.1 mouse_genomes_project X 68720928 68828239 + MGP_C57BL6NJ_P0096798 Mamld1 protein_coding protein_coding MGP_C57BL6NJ_T0096951.1 MGP_C57BL6NJ_G0036321.1 mouse_genomes_project X 71816538 71818865 + MGP_C57BL6NJ_P0096951 Avpr2 protein_coding protein_coding MGP_C57BL6NJ_T0096952.1 MGP_C57BL6NJ_G0036321.1 mouse_genomes_project X 71816539 71817858 + Avpr2 protein_coding processed_transcript MGP_C57BL6NJ_T0096953.1 MGP_C57BL6NJ_G0036321.1 mouse_genomes_project X 71816546 71819939 + MGP_C57BL6NJ_P0096953 Avpr2 protein_coding protein_coding MGP_C57BL6NJ_T0096954.1 MGP_C57BL6NJ_G0036321.1 mouse_genomes_project X 71816550 71818634 + MGP_C57BL6NJ_P0096954 Avpr2 protein_coding protein_coding MGP_C57BL6NJ_T0098226.1 MGP_C57BL6NJ_G0036661.1 mouse_genomes_project X 152440568 152463837 + MGP_C57BL6NJ_P0098226 Alas2 protein_coding protein_coding MGP_C57BL6NJ_T0098227.1 MGP_C57BL6NJ_G0036661.1 mouse_genomes_project X 152440652 152463821 + MGP_C57BL6NJ_P0098227 Alas2 protein_coding protein_coding MGP_C57BL6NJ_T0098228.1 MGP_C57BL6NJ_G0036661.1 mouse_genomes_project X 152447230 152450857 + Alas2 protein_coding retained_intron MGP_C57BL6NJ_T0098229.1 MGP_C57BL6NJ_G0036661.1 mouse_genomes_project X 152459588 152463821 + Alas2 protein_coding processed_transcript MGP_C57BL6NJ_T0096830.1 MGP_C57BL6NJ_G0036285.1 mouse_genomes_project X 69372077 69380395 + MGP_C57BL6NJ_P0096830 Gpr50 protein_coding protein_coding MGP_C57BL6NJ_T0096831.1 MGP_C57BL6NJ_G0036285.1 mouse_genomes_project X 69372376 69378530 + Gpr50 protein_coding processed_transcript MGP_C57BL6NJ_T0096832.1 MGP_C57BL6NJ_G0036285.1 mouse_genomes_project X 69372376 69378530 + Gpr50 protein_coding processed_transcript MGP_C57BL6NJ_T0009636.1 MGP_C57BL6NJ_G0007724.1 mouse_genomes_project X 170020108 170028903 - Gm8817 lincRNA lincRNA MGP_C57BL6NJ_T0009637.1 MGP_C57BL6NJ_G0007724.1 mouse_genomes_project X 170020250 170028903 - Gm8817 lincRNA lincRNA MGP_C57BL6NJ_T0009638.1 MGP_C57BL6NJ_G0007724.1 mouse_genomes_project X 170020466 170026912 - Gm8817 lincRNA lincRNA MGP_C57BL6NJ_T0098402.1 MGP_C57BL6NJ_G0036699.1 mouse_genomes_project X 157937229 157988192 - MGP_C57BL6NJ_P0098402 Ptchd1 protein_coding protein_coding MGP_C57BL6NJ_T0098403.1 MGP_C57BL6NJ_G0036699.1 mouse_genomes_project X 157937315 157987985 - MGP_C57BL6NJ_P0098403 Ptchd1 protein_coding protein_coding MGP_C57BL6NJ_T0098404.1 MGP_C57BL6NJ_G0036699.1 mouse_genomes_project X 157951703 157988681 - Ptchd1 protein_coding processed_transcript MGP_C57BL6NJ_T0100825.1 MGP_C57BL6NJ_G0038871.1 mouse_genomes_project X 153366926 153367076 + Gm22248 snRNA snRNA MGP_C57BL6NJ_T0017262.1 MGP_C57BL6NJ_G0015307.1 mouse_genomes_project X 142937202 142937418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017005.1 MGP_C57BL6NJ_G0015050.1 mouse_genomes_project X 92638358 92641095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096753.1 MGP_C57BL6NJ_G0036262.1 mouse_genomes_project X 61430845 61431624 - MGP_C57BL6NJ_P0096753 Gm6760 protein_coding protein_coding MGP_C57BL6NJ_T0016684.1 MGP_C57BL6NJ_G0014729.1 mouse_genomes_project X 7685766 7685874 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096657.1 MGP_C57BL6NJ_G0036225.1 mouse_genomes_project X 50097828 50102218 - MGP_C57BL6NJ_P0096657 protein_coding protein_coding MGP_C57BL6NJ_T0097522.1 MGP_C57BL6NJ_G0036449.1 mouse_genomes_project X 100492445 100627461 - MGP_C57BL6NJ_P0097522 Snx12 protein_coding protein_coding MGP_C57BL6NJ_T0097523.1 MGP_C57BL6NJ_G0036449.1 mouse_genomes_project X 100616895 100627471 - MGP_C57BL6NJ_P0097523 Snx12 protein_coding protein_coding MGP_C57BL6NJ_T0097524.1 MGP_C57BL6NJ_G0036449.1 mouse_genomes_project X 100616895 100627457 - MGP_C57BL6NJ_P0097524 Snx12 protein_coding protein_coding MGP_C57BL6NJ_T0097525.1 MGP_C57BL6NJ_G0036449.1 mouse_genomes_project X 100618397 100619450 - Snx12 protein_coding processed_transcript MGP_C57BL6NJ_T0017097.1 MGP_C57BL6NJ_G0015142.1 mouse_genomes_project X 104825026 104825981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096714.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54103509 54113866 - MGP_C57BL6NJ_P0096714 Rbmx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096715.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54106009 54113921 - MGP_C57BL6NJ_P0096715 Rbmx protein_coding protein_coding MGP_C57BL6NJ_T0096716.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54106337 54113847 - MGP_C57BL6NJ_P0096716 Rbmx protein_coding protein_coding MGP_C57BL6NJ_T0096717.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54106341 54113921 - MGP_C57BL6NJ_P0096717 Rbmx protein_coding protein_coding MGP_C57BL6NJ_T0096718.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54107062 54113863 - MGP_C57BL6NJ_P0096718 Rbmx protein_coding protein_coding MGP_C57BL6NJ_T0096719.1 MGP_C57BL6NJ_G0036247.1 mouse_genomes_project X 54110772 54113682 - MGP_C57BL6NJ_P0096719 Rbmx protein_coding protein_coding MGP_C57BL6NJ_T0098089.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141444910 141562185 - MGP_C57BL6NJ_P0098089 Rbm41 protein_coding protein_coding MGP_C57BL6NJ_T0098090.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141510304 141562147 - MGP_C57BL6NJ_P0098090 Rbm41 protein_coding protein_coding MGP_C57BL6NJ_T0098091.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141510336 141562132 - MGP_C57BL6NJ_P0098091 Rbm41 protein_coding protein_coding MGP_C57BL6NJ_T0098092.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141511167 141562141 - MGP_C57BL6NJ_P0098092 Rbm41 protein_coding protein_coding MGP_C57BL6NJ_T0098093.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141531221 141557672 - Rbm41 protein_coding retained_intron MGP_C57BL6NJ_T0098094.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141531888 141562126 - Rbm41 protein_coding processed_transcript MGP_C57BL6NJ_T0098095.1 MGP_C57BL6NJ_G0036623.1 mouse_genomes_project X 141555946 141562156 - Rbm41 protein_coding retained_intron MGP_C57BL6NJ_T0016830.1 MGP_C57BL6NJ_G0014875.1 mouse_genomes_project X 57475316 57477249 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016704.1 MGP_C57BL6NJ_G0014749.1 mouse_genomes_project X 12807900 12808720 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005733.1 MGP_C57BL6NJ_G0004828.1 mouse_genomes_project X 2887176 2889710 + Rbm3os antisense antisense MGP_C57BL6NJ_T0005734.1 MGP_C57BL6NJ_G0004828.1 mouse_genomes_project X 2887662 2889422 + Rbm3os antisense antisense MGP_C57BL6NJ_T0017123.1 MGP_C57BL6NJ_G0015168.1 mouse_genomes_project X 109290437 109293587 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102108.1 MGP_C57BL6NJ_G0040154.1 mouse_genomes_project X 165505153 165505274 + Gm23786 snoRNA snoRNA MGP_C57BL6NJ_T0096425.1 MGP_C57BL6NJ_G0036151.1 mouse_genomes_project X 33453932 33457967 + MGP_C57BL6NJ_P0096425 Rhox5 protein_coding protein_coding MGP_C57BL6NJ_T0096426.1 MGP_C57BL6NJ_G0036151.1 mouse_genomes_project X 33453941 33457855 + MGP_C57BL6NJ_P0096426 Rhox5 protein_coding protein_coding MGP_C57BL6NJ_T0100783.1 MGP_C57BL6NJ_G0038829.1 mouse_genomes_project X 54729365 54729472 + Gm25023 snRNA snRNA MGP_C57BL6NJ_T0017008.1 MGP_C57BL6NJ_G0015053.1 mouse_genomes_project X 93071757 93072028 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011450.1 MGP_C57BL6NJ_G0009535.1 mouse_genomes_project X 93449404 93449468 + Mir7673 miRNA miRNA MGP_C57BL6NJ_T0017004.1 MGP_C57BL6NJ_G0015049.1 mouse_genomes_project X 91671414 91672974 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016831.1 MGP_C57BL6NJ_G0014876.1 mouse_genomes_project X 57509945 57510387 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016951.1 MGP_C57BL6NJ_G0014996.1 mouse_genomes_project X 80178650 80181184 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017175.1 MGP_C57BL6NJ_G0015220.1 mouse_genomes_project X 120739187 120739440 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012050.1 MGP_C57BL6NJ_G0010135.1 mouse_genomes_project X 165440087 165440402 + Gm25557 misc_RNA misc_RNA MGP_C57BL6NJ_T0016701.1 MGP_C57BL6NJ_G0014746.1 mouse_genomes_project X 11754762 11755937 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095962.1 MGP_C57BL6NJ_G0036008.1 mouse_genomes_project X 2043360 2050199 - MGP_C57BL6NJ_P0095962 Usp27x protein_coding protein_coding MGP_C57BL6NJ_T0095963.1 MGP_C57BL6NJ_G0036008.1 mouse_genomes_project X 2046963 2050203 - MGP_C57BL6NJ_P0095963 Usp27x protein_coding protein_coding MGP_C57BL6NJ_T0016652.1 MGP_C57BL6NJ_G0014697.1 mouse_genomes_project X 2377189 2377593 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098622.1 MGP_C57BL6NJ_G0036752.1 mouse_genomes_project X 169366912 169381381 + MGP_C57BL6NJ_P0098622 Trappc2 protein_coding protein_coding MGP_C57BL6NJ_T0098623.1 MGP_C57BL6NJ_G0036752.1 mouse_genomes_project X 169367114 169380842 + Trappc2 protein_coding retained_intron MGP_C57BL6NJ_T0096456.1 MGP_C57BL6NJ_G0036166.1 mouse_genomes_project X 34252748 34294314 - MGP_C57BL6NJ_P0096456 Cul4b protein_coding protein_coding MGP_C57BL6NJ_T0096457.1 MGP_C57BL6NJ_G0036166.1 mouse_genomes_project X 34252748 34315020 - MGP_C57BL6NJ_P0096457 Cul4b protein_coding protein_coding MGP_C57BL6NJ_T0096458.1 MGP_C57BL6NJ_G0036166.1 mouse_genomes_project X 34253044 34294451 - MGP_C57BL6NJ_P0096458 Cul4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096459.1 MGP_C57BL6NJ_G0036166.1 mouse_genomes_project X 34253048 34315007 - MGP_C57BL6NJ_P0096459 Cul4b protein_coding protein_coding MGP_C57BL6NJ_T0098515.1 MGP_C57BL6NJ_G0036724.1 mouse_genomes_project X 165154010 165317081 - MGP_C57BL6NJ_P0098515 Reps2 protein_coding protein_coding MGP_C57BL6NJ_T0098516.1 MGP_C57BL6NJ_G0036724.1 mouse_genomes_project X 165154010 165391543 - MGP_C57BL6NJ_P0098516 Reps2 protein_coding protein_coding MGP_C57BL6NJ_T0098517.1 MGP_C57BL6NJ_G0036724.1 mouse_genomes_project X 165154010 165391591 - MGP_C57BL6NJ_P0098517 Reps2 protein_coding protein_coding MGP_C57BL6NJ_T0098518.1 MGP_C57BL6NJ_G0036724.1 mouse_genomes_project X 165276682 165317179 - Reps2 protein_coding processed_transcript MGP_C57BL6NJ_T0098519.1 MGP_C57BL6NJ_G0036724.1 mouse_genomes_project X 165294631 165302255 - Reps2 protein_coding retained_intron MGP_C57BL6NJ_T0096150.1 MGP_C57BL6NJ_G0036051.1 mouse_genomes_project X 3833103 3833944 + MGP_C57BL6NJ_P0096150 protein_coding protein_coding MGP_C57BL6NJ_T0102079.1 MGP_C57BL6NJ_G0040125.1 mouse_genomes_project X 92356721 92356854 + Gm23454 snoRNA snoRNA MGP_C57BL6NJ_T0017396.1 MGP_C57BL6NJ_G0015441.1 mouse_genomes_project X 170784716 170786012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096320.1 MGP_C57BL6NJ_G0036105.1 mouse_genomes_project X 16184042 16188610 + MGP_C57BL6NJ_P0096320 Timp1 protein_coding protein_coding MGP_C57BL6NJ_T0096321.1 MGP_C57BL6NJ_G0036105.1 mouse_genomes_project X 16184097 16188612 + MGP_C57BL6NJ_P0096321 Timp1 protein_coding protein_coding MGP_C57BL6NJ_T0017188.1 MGP_C57BL6NJ_G0015233.1 mouse_genomes_project X 123284822 123285551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016941.1 MGP_C57BL6NJ_G0014986.1 mouse_genomes_project X 77026073 77028947 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017391.1 MGP_C57BL6NJ_G0015436.1 mouse_genomes_project X 169414013 169414839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019109.1 MGP_C57BL6NJ_G0016176.1 mouse_genomes_project X 100114334 100117994 - Gm14866 processed_transcript processed_transcript MGP_C57BL6NJ_T0011476.1 MGP_C57BL6NJ_G0009561.1 mouse_genomes_project X 145337725 145337847 - miRNA miRNA MGP_C57BL6NJ_T0096615.1 MGP_C57BL6NJ_G0036208.1 mouse_genomes_project X 47266861 47282621 - MGP_C57BL6NJ_P0096615 Rap2c protein_coding protein_coding MGP_C57BL6NJ_T0009568.1 MGP_C57BL6NJ_G0007681.1 mouse_genomes_project X 45512146 45547224 - Gm14696 lincRNA lincRNA MGP_C57BL6NJ_T0017179.1 MGP_C57BL6NJ_G0015224.1 mouse_genomes_project X 121613000 121613975 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097899.1 MGP_C57BL6NJ_G0036563.1 mouse_genomes_project X 135513861 135535101 - MGP_C57BL6NJ_P0097899 Taf7l protein_coding protein_coding MGP_C57BL6NJ_T0097900.1 MGP_C57BL6NJ_G0036563.1 mouse_genomes_project X 135514301 135531887 - MGP_C57BL6NJ_P0097900 Taf7l protein_coding protein_coding MGP_C57BL6NJ_T0097901.1 MGP_C57BL6NJ_G0036563.1 mouse_genomes_project X 135523602 135531882 - Taf7l protein_coding processed_transcript MGP_C57BL6NJ_T0102073.1 MGP_C57BL6NJ_G0040119.1 mouse_genomes_project X 74052910 74053037 + Gm23320 snoRNA snoRNA MGP_C57BL6NJ_T0016914.1 MGP_C57BL6NJ_G0014959.1 mouse_genomes_project X 73857977 73858432 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096198.1 MGP_C57BL6NJ_G0036067.1 mouse_genomes_project X 7593299 7602080 + Atp6ap2 protein_coding retained_intron MGP_C57BL6NJ_T0096199.1 MGP_C57BL6NJ_G0036067.1 mouse_genomes_project X 7593299 7624056 + MGP_C57BL6NJ_P0096199 Atp6ap2 protein_coding protein_coding MGP_C57BL6NJ_T0016867.1 MGP_C57BL6NJ_G0014912.1 mouse_genomes_project X 64410266 64410790 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011409.1 MGP_C57BL6NJ_G0009494.1 mouse_genomes_project X 49444273 49444372 - Mir351 miRNA miRNA MGP_C57BL6NJ_T0017167.1 MGP_C57BL6NJ_G0015212.1 mouse_genomes_project X 118123982 118124186 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017215.1 MGP_C57BL6NJ_G0015260.1 mouse_genomes_project X 135064999 135066628 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097827.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120671808 121348900 + MGP_C57BL6NJ_P0097827 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0097828.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120671808 121348900 + MGP_C57BL6NJ_P0097828 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0097829.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120671876 120674021 + Pcdh11x protein_coding retained_intron MGP_C57BL6NJ_T0097830.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120671876 121353175 + MGP_C57BL6NJ_P0097830 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0097831.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120671952 121348900 + MGP_C57BL6NJ_P0097831 Pcdh11x protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097832.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120759655 121353163 + MGP_C57BL6NJ_P0097832 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0097833.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120760428 120806294 + MGP_C57BL6NJ_P0097833 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0097834.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120796558 121348898 + MGP_C57BL6NJ_P0097834 Pcdh11x protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097835.1 MGP_C57BL6NJ_G0036542.1 mouse_genomes_project X 120796558 121348900 + MGP_C57BL6NJ_P0097835 Pcdh11x protein_coding protein_coding MGP_C57BL6NJ_T0016816.1 MGP_C57BL6NJ_G0014861.1 mouse_genomes_project X 54462487 54464496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102072.1 MGP_C57BL6NJ_G0040118.1 mouse_genomes_project X 73219428 73219546 + Gm25520 snoRNA snoRNA MGP_C57BL6NJ_T0095944.1 MGP_C57BL6NJ_G0036001.1 mouse_genomes_project X 719675 721876 - MGP_C57BL6NJ_P0095944 AU022751 protein_coding protein_coding MGP_C57BL6NJ_T0095945.1 MGP_C57BL6NJ_G0036001.1 mouse_genomes_project X 719675 721876 - MGP_C57BL6NJ_P0095945 AU022751 protein_coding protein_coding MGP_C57BL6NJ_T0017172.1 MGP_C57BL6NJ_G0015217.1 mouse_genomes_project X 120329935 120331225 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097621.1 MGP_C57BL6NJ_G0036471.1 mouse_genomes_project X 101804976 102021603 - MGP_C57BL6NJ_P0097621 Hdac8 protein_coding protein_coding MGP_C57BL6NJ_T0097622.1 MGP_C57BL6NJ_G0036471.1 mouse_genomes_project X 101927118 102021325 - MGP_C57BL6NJ_P0097622 Hdac8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097623.1 MGP_C57BL6NJ_G0036471.1 mouse_genomes_project X 101929073 102021390 - Hdac8 protein_coding processed_transcript MGP_C57BL6NJ_T0097624.1 MGP_C57BL6NJ_G0036471.1 mouse_genomes_project X 101935904 102021589 - Hdac8 protein_coding processed_transcript MGP_C57BL6NJ_T0097625.1 MGP_C57BL6NJ_G0036471.1 mouse_genomes_project X 102014398 102020985 - Hdac8 protein_coding retained_intron MGP_C57BL6NJ_T0016754.1 MGP_C57BL6NJ_G0014799.1 mouse_genomes_project X 37106806 37108346 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009588.1 MGP_C57BL6NJ_G0007696.1 mouse_genomes_project X 96279984 96280801 - BC061195 lincRNA lincRNA MGP_C57BL6NJ_T0017034.1 MGP_C57BL6NJ_G0015079.1 mouse_genomes_project X 96195114 96197479 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005776.1 MGP_C57BL6NJ_G0004861.1 mouse_genomes_project X 163135015 163146868 - Gm15241 antisense antisense MGP_C57BL6NJ_T0017261.1 MGP_C57BL6NJ_G0015306.1 mouse_genomes_project X 142851362 142852144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099205.1 MGP_C57BL6NJ_G0037269.1 mouse_genomes_project X 160114953 160115047 - Gm23381 rRNA rRNA MGP_C57BL6NJ_T0097955.1 MGP_C57BL6NJ_G0036577.1 mouse_genomes_project X 136782660 136823197 - MGP_C57BL6NJ_P0097955 Tcp11x2 protein_coding protein_coding MGP_C57BL6NJ_T0016723.1 MGP_C57BL6NJ_G0014768.1 mouse_genomes_project X 16891066 16893138 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011431.1 MGP_C57BL6NJ_G0009516.1 mouse_genomes_project X 64239652 64239710 - Mir465d miRNA miRNA MGP_C57BL6NJ_T0016861.1 MGP_C57BL6NJ_G0014906.1 mouse_genomes_project X 63388288 63388550 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096238.1 MGP_C57BL6NJ_G0036078.1 mouse_genomes_project X 9300820 9301334 + MGP_C57BL6NJ_P0096238 Gm5382 protein_coding protein_coding MGP_C57BL6NJ_T0098503.1 MGP_C57BL6NJ_G0036720.1 mouse_genomes_project X 163566180 163571117 - MGP_C57BL6NJ_P0098503 Gja6 protein_coding protein_coding MGP_C57BL6NJ_T0098351.1 MGP_C57BL6NJ_G0036678.1 mouse_genomes_project X 154382868 154408620 - MGP_C57BL6NJ_P0098351 Gpr173 protein_coding protein_coding MGP_C57BL6NJ_T0098352.1 MGP_C57BL6NJ_G0036678.1 mouse_genomes_project X 154406931 154408620 - Gpr173 protein_coding processed_transcript MGP_C57BL6NJ_T0100768.1 MGP_C57BL6NJ_G0038814.1 mouse_genomes_project X 16107831 16107936 - Gm26065 snRNA snRNA MGP_C57BL6NJ_T0002625.1 MGP_C57BL6NJ_G0002512.1 mouse_genomes_project X 135823874 135825293 - TEC TEC MGP_C57BL6NJ_T0017169.1 MGP_C57BL6NJ_G0015214.1 mouse_genomes_project X 118489106 118490911 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097770.1 MGP_C57BL6NJ_G0036520.1 mouse_genomes_project X 110809851 110812767 + MGP_C57BL6NJ_P0097770 Pou3f4 protein_coding protein_coding MGP_C57BL6NJ_T0016875.1 MGP_C57BL6NJ_G0014920.1 mouse_genomes_project X 66030024 66031030 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095942.1 MGP_C57BL6NJ_G0035999.1 mouse_genomes_project X 52934 55302 - MGP_C57BL6NJ_P0095942 Mycs protein_coding protein_coding MGP_C57BL6NJ_T0098634.1 MGP_C57BL6NJ_G0036757.1 mouse_genomes_project X 170208668 170226436 - MGP_C57BL6NJ_P0098634 Tlr8 protein_coding protein_coding MGP_C57BL6NJ_T0098635.1 MGP_C57BL6NJ_G0036757.1 mouse_genomes_project X 170208704 170225938 - MGP_C57BL6NJ_P0098635 Tlr8 protein_coding protein_coding MGP_C57BL6NJ_T0098636.1 MGP_C57BL6NJ_G0036757.1 mouse_genomes_project X 170210791 170226449 - Tlr8 protein_coding processed_transcript MGP_C57BL6NJ_T0098637.1 MGP_C57BL6NJ_G0036757.1 mouse_genomes_project X 170211515 170226479 - MGP_C57BL6NJ_P0098637 Tlr8 protein_coding protein_coding MGP_C57BL6NJ_T0098638.1 MGP_C57BL6NJ_G0036757.1 mouse_genomes_project X 170221503 170226434 - Tlr8 protein_coding processed_transcript MGP_C57BL6NJ_T0098386.1 MGP_C57BL6NJ_G0036694.1 mouse_genomes_project X 156876241 156880356 - MGP_C57BL6NJ_P0098386 protein_coding protein_coding MGP_C57BL6NJ_T0096570.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44734545 44787439 - MGP_C57BL6NJ_P0096570 Zfp280c protein_coding protein_coding MGP_C57BL6NJ_T0096571.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44734545 44785197 - MGP_C57BL6NJ_P0096571 Zfp280c protein_coding protein_coding MGP_C57BL6NJ_T0096572.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44734545 44787518 - MGP_C57BL6NJ_P0096572 Zfp280c protein_coding protein_coding MGP_C57BL6NJ_T0096573.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44734546 44784825 - MGP_C57BL6NJ_P0096573 Zfp280c protein_coding protein_coding MGP_C57BL6NJ_T0096574.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44735678 44736625 - Zfp280c protein_coding retained_intron MGP_C57BL6NJ_T0096575.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44771493 44787457 - Zfp280c protein_coding processed_transcript MGP_C57BL6NJ_T0096576.1 MGP_C57BL6NJ_G0036193.1 mouse_genomes_project X 44779168 44787570 - Zfp280c protein_coding processed_transcript MGP_C57BL6NJ_T0017209.1 MGP_C57BL6NJ_G0015254.1 mouse_genomes_project X 133094072 133095015 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097997.1 MGP_C57BL6NJ_G0036594.1 mouse_genomes_project X 137886211 137968341 + MGP_C57BL6NJ_P0097997 protein_coding protein_coding MGP_C57BL6NJ_T0097998.1 MGP_C57BL6NJ_G0036594.1 mouse_genomes_project X 137886224 137947851 + protein_coding processed_transcript MGP_C57BL6NJ_T0097999.1 MGP_C57BL6NJ_G0036594.1 mouse_genomes_project X 137967131 137969225 + MGP_C57BL6NJ_P0097999 protein_coding protein_coding MGP_C57BL6NJ_T0098000.1 MGP_C57BL6NJ_G0036594.1 mouse_genomes_project X 137967159 137969221 + MGP_C57BL6NJ_P0098000 protein_coding protein_coding MGP_C57BL6NJ_T0102338.1 MGP_C57BL6NJ_G0040291.1 mouse_genomes_project X 10216362 10217244 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102339.1 MGP_C57BL6NJ_G0040291.1 mouse_genomes_project X 10216609 10217158 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0016997.1 MGP_C57BL6NJ_G0015042.1 mouse_genomes_project X 90581194 90581582 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096147.1 MGP_C57BL6NJ_G0036048.1 mouse_genomes_project X 3790585 3791377 + MGP_C57BL6NJ_P0096147 protein_coding protein_coding MGP_C57BL6NJ_T0017148.1 MGP_C57BL6NJ_G0015193.1 mouse_genomes_project X 114832680 114833119 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100780.1 MGP_C57BL6NJ_G0038826.1 mouse_genomes_project X 46596295 46596402 + Gm22288 snRNA snRNA MGP_C57BL6NJ_T0100760.1 MGP_C57BL6NJ_G0038806.1 mouse_genomes_project X 9062645 9062736 - Gm25552 snRNA snRNA MGP_C57BL6NJ_T0017139.1 MGP_C57BL6NJ_G0015184.1 mouse_genomes_project X 112931166 112931374 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102365.1 MGP_C57BL6NJ_G0040308.1 mouse_genomes_project X 154552936 154555136 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102366.1 MGP_C57BL6NJ_G0040308.1 mouse_genomes_project X 154553709 154554851 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0099230.1 MGP_C57BL6NJ_G0037294.1 mouse_genomes_project X 55875144 55875376 - Gm26351 ribozyme ribozyme MGP_C57BL6NJ_T0016729.1 MGP_C57BL6NJ_G0014774.1 mouse_genomes_project X 17829916 17830400 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017046.1 MGP_C57BL6NJ_G0015091.1 mouse_genomes_project X 99066052 99066346 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017387.1 MGP_C57BL6NJ_G0015432.1 mouse_genomes_project X 168971496 168975507 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016760.1 MGP_C57BL6NJ_G0014805.1 mouse_genomes_project X 38004220 38007570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017109.1 MGP_C57BL6NJ_G0015154.1 mouse_genomes_project X 106465567 106466921 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098631.1 MGP_C57BL6NJ_G0036756.1 mouse_genomes_project X 170173115 170176480 - MGP_C57BL6NJ_P0098631 Tmsb4x protein_coding protein_coding MGP_C57BL6NJ_T0098632.1 MGP_C57BL6NJ_G0036756.1 mouse_genomes_project X 170173117 170176314 - MGP_C57BL6NJ_P0098632 Tmsb4x protein_coding protein_coding MGP_C57BL6NJ_T0098633.1 MGP_C57BL6NJ_G0036756.1 mouse_genomes_project X 170173314 170175992 - MGP_C57BL6NJ_P0098633 Tmsb4x protein_coding protein_coding MGP_C57BL6NJ_T0016991.1 MGP_C57BL6NJ_G0015036.1 mouse_genomes_project X 89631886 89632403 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102112.1 MGP_C57BL6NJ_G0040158.1 mouse_genomes_project X 172778605 172778724 - Gm25651 snoRNA snoRNA MGP_C57BL6NJ_T0011377.1 MGP_C57BL6NJ_G0009462.1 mouse_genomes_project X 1907159 1907224 - Mir362 miRNA miRNA MGP_C57BL6NJ_T0016714.1 MGP_C57BL6NJ_G0014759.1 mouse_genomes_project X 15619024 15619430 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016708.1 MGP_C57BL6NJ_G0014753.1 mouse_genomes_project X 14149046 14149663 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098520.1 MGP_C57BL6NJ_G0036725.1 mouse_genomes_project X 165517138 165536231 + MGP_C57BL6NJ_P0098520 Rbbp7 protein_coding protein_coding MGP_C57BL6NJ_T0098521.1 MGP_C57BL6NJ_G0036725.1 mouse_genomes_project X 165517157 165536231 + MGP_C57BL6NJ_P0098521 Rbbp7 protein_coding protein_coding MGP_C57BL6NJ_T0098522.1 MGP_C57BL6NJ_G0036725.1 mouse_genomes_project X 165517198 165533356 + MGP_C57BL6NJ_P0098522 Rbbp7 protein_coding protein_coding MGP_C57BL6NJ_T0098523.1 MGP_C57BL6NJ_G0036725.1 mouse_genomes_project X 165517803 165529691 + MGP_C57BL6NJ_P0098523 Rbbp7 protein_coding protein_coding MGP_C57BL6NJ_T0098524.1 MGP_C57BL6NJ_G0036725.1 mouse_genomes_project X 165532038 165535939 + MGP_C57BL6NJ_P0098524 Rbbp7 protein_coding protein_coding MGP_C57BL6NJ_T0016747.1 MGP_C57BL6NJ_G0014792.1 mouse_genomes_project X 35600117 35600687 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017130.1 MGP_C57BL6NJ_G0015175.1 mouse_genomes_project X 111921164 111921897 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103574.1 MGP_C57BL6NJ_G0041366.1 mouse_genomes_project X 34082970 34084654 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097189.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73213891 73227736 + MGP_C57BL6NJ_P0097189 Dkc1 protein_coding protein_coding MGP_C57BL6NJ_T0097190.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214076 73226720 + MGP_C57BL6NJ_P0097190 Dkc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097191.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214090 73220570 + MGP_C57BL6NJ_P0097191 Dkc1 protein_coding protein_coding MGP_C57BL6NJ_T0097192.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214123 73216925 + MGP_C57BL6NJ_P0097192 Dkc1 protein_coding protein_coding MGP_C57BL6NJ_T0097193.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214136 73216835 + Dkc1 protein_coding retained_intron MGP_C57BL6NJ_T0097194.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214138 73216985 + Dkc1 protein_coding processed_transcript MGP_C57BL6NJ_T0097195.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214152 73220492 + MGP_C57BL6NJ_P0097195 Dkc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097196.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73214583 73216857 + Dkc1 protein_coding retained_intron MGP_C57BL6NJ_T0097197.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73217955 73225170 + Dkc1 protein_coding retained_intron MGP_C57BL6NJ_T0097198.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73218090 73226202 + MGP_C57BL6NJ_P0097198 Dkc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097199.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73218296 73223677 + Dkc1 protein_coding processed_transcript MGP_C57BL6NJ_T0097200.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73218967 73223725 + Dkc1 protein_coding processed_transcript MGP_C57BL6NJ_T0097201.1 MGP_C57BL6NJ_G0036352.1 mouse_genomes_project X 73223907 73226235 + Dkc1 protein_coding retained_intron MGP_C57BL6NJ_T0016907.1 MGP_C57BL6NJ_G0014952.1 mouse_genomes_project X 72825360 72825744 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096279.1 MGP_C57BL6NJ_G0036097.1 mouse_genomes_project X 15838978 15852134 + MGP_C57BL6NJ_P0096279 Rgn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097595.1 MGP_C57BL6NJ_G0036463.1 mouse_genomes_project X 101179433 101183026 - MGP_C57BL6NJ_P0097595 Cxcr3 protein_coding protein_coding MGP_C57BL6NJ_T0016774.1 MGP_C57BL6NJ_G0014819.1 mouse_genomes_project X 41845667 41845902 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097303.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84287933 84365681 - MGP_C57BL6NJ_P0097303 Gk protein_coding protein_coding MGP_C57BL6NJ_T0097304.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84287933 84365668 - MGP_C57BL6NJ_P0097304 Gk protein_coding protein_coding MGP_C57BL6NJ_T0097305.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84287933 84365863 - MGP_C57BL6NJ_P0097305 Gk protein_coding protein_coding MGP_C57BL6NJ_T0097306.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84287933 84365697 - MGP_C57BL6NJ_P0097306 Gk protein_coding protein_coding MGP_C57BL6NJ_T0097307.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84292992 84300457 - Gk protein_coding processed_transcript MGP_C57BL6NJ_T0097308.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84300376 84302440 - Gk protein_coding retained_intron MGP_C57BL6NJ_T0097309.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84300673 84324194 - Gk protein_coding retained_intron MGP_C57BL6NJ_T0097310.1 MGP_C57BL6NJ_G0036386.1 mouse_genomes_project X 84347557 84351020 - Gk protein_coding retained_intron MGP_C57BL6NJ_T0098102.1 MGP_C57BL6NJ_G0036626.1 mouse_genomes_project X 141922310 142027003 + MGP_C57BL6NJ_P0098102 Frmpd3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098103.1 MGP_C57BL6NJ_G0036626.1 mouse_genomes_project X 141954563 141983263 + MGP_C57BL6NJ_P0098103 Frmpd3 protein_coding protein_coding MGP_C57BL6NJ_T0098104.1 MGP_C57BL6NJ_G0036626.1 mouse_genomes_project X 141970723 141983908 + MGP_C57BL6NJ_P0098104 Frmpd3 protein_coding protein_coding MGP_C57BL6NJ_T0019073.1 MGP_C57BL6NJ_G0016164.1 mouse_genomes_project X 7781316 7845142 + Gm14634 processed_transcript processed_transcript MGP_C57BL6NJ_T0019074.1 MGP_C57BL6NJ_G0016164.1 mouse_genomes_project X 7781582 7841869 + Gm14634 processed_transcript processed_transcript MGP_C57BL6NJ_T0096201.1 MGP_C57BL6NJ_G0036069.1 mouse_genomes_project X 7690502 7781112 - MGP_C57BL6NJ_P0096201 Med14 protein_coding protein_coding MGP_C57BL6NJ_T0096202.1 MGP_C57BL6NJ_G0036069.1 mouse_genomes_project X 7694168 7733231 - MGP_C57BL6NJ_P0096202 Med14 protein_coding protein_coding MGP_C57BL6NJ_T0096203.1 MGP_C57BL6NJ_G0036069.1 mouse_genomes_project X 7694882 7781112 - Med14 protein_coding retained_intron MGP_C57BL6NJ_T0096204.1 MGP_C57BL6NJ_G0036069.1 mouse_genomes_project X 7723493 7731048 - Med14 protein_coding retained_intron MGP_C57BL6NJ_T0096205.1 MGP_C57BL6NJ_G0036069.1 mouse_genomes_project X 7726249 7781112 - MGP_C57BL6NJ_P0096205 Med14 protein_coding protein_coding MGP_C57BL6NJ_T0098552.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166759154 166782312 - MGP_C57BL6NJ_P0098552 Zrsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098553.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166762746 166773898 - Zrsr2 protein_coding retained_intron MGP_C57BL6NJ_T0098554.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166763649 166767158 - Zrsr2 protein_coding retained_intron MGP_C57BL6NJ_T0098555.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166772620 166774140 - Zrsr2 protein_coding retained_intron MGP_C57BL6NJ_T0098556.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166774067 166782321 - MGP_C57BL6NJ_P0098556 Zrsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098557.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166777272 166781844 - Zrsr2 protein_coding processed_transcript MGP_C57BL6NJ_T0098558.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166777321 166782275 - MGP_C57BL6NJ_P0098558 Zrsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098559.1 MGP_C57BL6NJ_G0036733.1 mouse_genomes_project X 166780153 166782384 - MGP_C57BL6NJ_P0098559 Zrsr2 protein_coding protein_coding MGP_C57BL6NJ_T0098454.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162230247 162591456 + MGP_C57BL6NJ_P0098454 Sh3kbp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0098455.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162230434 162593598 + MGP_C57BL6NJ_P0098455 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098456.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162230703 162530989 + Sh3kbp1 protein_coding retained_intron MGP_C57BL6NJ_T0098457.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162299580 162473542 + MGP_C57BL6NJ_P0098457 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098458.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162312024 162589696 + MGP_C57BL6NJ_P0098458 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098459.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162312024 162589394 + MGP_C57BL6NJ_P0098459 Sh3kbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098460.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162447666 162591193 + MGP_C57BL6NJ_P0098460 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098461.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162447679 162589696 + MGP_C57BL6NJ_P0098461 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098462.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162448162 162591445 + Sh3kbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0098463.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162529762 162588848 + MGP_C57BL6NJ_P0098463 Sh3kbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098464.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162555427 162587408 + Sh3kbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0098465.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162556423 162591446 + Sh3kbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0098466.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162556642 162589696 + Sh3kbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0098467.1 MGP_C57BL6NJ_G0036712.1 mouse_genomes_project X 162556748 162588719 + Sh3kbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0097759.1 MGP_C57BL6NJ_G0036516.1 mouse_genomes_project X 108611923 108712077 - MGP_C57BL6NJ_P0097759 Brwd3 protein_coding protein_coding MGP_C57BL6NJ_T0097760.1 MGP_C57BL6NJ_G0036516.1 mouse_genomes_project X 108617475 108712101 - MGP_C57BL6NJ_P0097760 Brwd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097761.1 MGP_C57BL6NJ_G0036516.1 mouse_genomes_project X 108617475 108712101 - MGP_C57BL6NJ_P0097761 Brwd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0097762.1 MGP_C57BL6NJ_G0036516.1 mouse_genomes_project X 108681350 108712069 - Brwd3 protein_coding retained_intron MGP_C57BL6NJ_T0097763.1 MGP_C57BL6NJ_G0036516.1 mouse_genomes_project X 108698695 108712075 - MGP_C57BL6NJ_P0097763 Brwd3 protein_coding protein_coding MGP_C57BL6NJ_T0096219.1 MGP_C57BL6NJ_G0036072.1 mouse_genomes_project X 8533948 8560306 + MGP_C57BL6NJ_P0096219 Nyx protein_coding protein_coding MGP_C57BL6NJ_T0016670.1 MGP_C57BL6NJ_G0014715.1 mouse_genomes_project X 5507896 5508373 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098429.1 MGP_C57BL6NJ_G0036706.1 mouse_genomes_project X 160308810 160310745 + MGP_C57BL6NJ_P0098429 Klhl34 protein_coding protein_coding MGP_C57BL6NJ_T0096408.1 MGP_C57BL6NJ_G0036137.1 mouse_genomes_project X 32672054 32692333 - MGP_C57BL6NJ_P0096408 Upf3b protein_coding protein_coding MGP_C57BL6NJ_T0096409.1 MGP_C57BL6NJ_G0036137.1 mouse_genomes_project X 32676052 32686596 - MGP_C57BL6NJ_P0096409 Upf3b protein_coding protein_coding MGP_C57BL6NJ_T0096410.1 MGP_C57BL6NJ_G0036137.1 mouse_genomes_project X 32677826 32692333 - Upf3b protein_coding processed_transcript MGP_C57BL6NJ_T0096220.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8588594 8875195 - MGP_C57BL6NJ_P0096220 Cask protein_coding unknown_likely_coding MGP_C57BL6NJ_T0096221.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8588598 8928222 - MGP_C57BL6NJ_P0096221 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096222.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8588598 8864775 - MGP_C57BL6NJ_P0096222 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096223.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8588598 8928185 - MGP_C57BL6NJ_P0096223 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096224.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8592839 8928200 - MGP_C57BL6NJ_P0096224 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096225.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8593290 8598277 - MGP_C57BL6NJ_P0096225 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096226.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8593588 8609174 - MGP_C57BL6NJ_P0096226 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096227.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8604844 8633041 - MGP_C57BL6NJ_P0096227 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096228.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8627454 8928222 - Cask protein_coding retained_intron MGP_C57BL6NJ_T0096229.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8644842 8753366 - MGP_C57BL6NJ_P0096229 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096230.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8702707 8927732 - MGP_C57BL6NJ_P0096230 Cask protein_coding protein_coding MGP_C57BL6NJ_T0096234.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8790782 8933011 - Cask protein_coding processed_transcript MGP_C57BL6NJ_T0096235.1 MGP_C57BL6NJ_G0036073.1 mouse_genomes_project X 8927733 8928379 - Cask protein_coding processed_transcript MGP_C57BL6NJ_T0099279.1 MGP_C57BL6NJ_G0037343.1 mouse_genomes_project X 31344699 31344974 + Gm25624 scaRNA scaRNA MGP_C57BL6NJ_T0016944.1 MGP_C57BL6NJ_G0014989.1 mouse_genomes_project X 78145019 78145862 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103570.1 MGP_C57BL6NJ_G0041362.1 mouse_genomes_project X 33424843 33425354 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0019110.1 MGP_C57BL6NJ_G0016177.1 mouse_genomes_project X 100703671 100729177 + Gm21986 processed_transcript processed_transcript MGP_C57BL6NJ_T0097722.1 MGP_C57BL6NJ_G0036503.1 mouse_genomes_project X 106395880 106427421 - MGP_C57BL6NJ_P0097722 Cysltr1 protein_coding protein_coding MGP_C57BL6NJ_T0097723.1 MGP_C57BL6NJ_G0036503.1 mouse_genomes_project X 106400259 106403301 - MGP_C57BL6NJ_P0097723 Cysltr1 protein_coding protein_coding MGP_C57BL6NJ_T0096760.1 MGP_C57BL6NJ_G0036266.1 mouse_genomes_project X 63389699 63390256 + MGP_C57BL6NJ_P0096760 protein_coding protein_coding MGP_C57BL6NJ_T0103587.1 MGP_C57BL6NJ_G0041379.1 mouse_genomes_project X 74558423 74559383 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0097904.1 MGP_C57BL6NJ_G0036566.1 mouse_genomes_project X 135614140 135654904 - MGP_C57BL6NJ_P0097904 Btk protein_coding protein_coding MGP_C57BL6NJ_T0097905.1 MGP_C57BL6NJ_G0036566.1 mouse_genomes_project X 135614174 135654892 - MGP_C57BL6NJ_P0097905 Btk protein_coding protein_coding MGP_C57BL6NJ_T0097906.1 MGP_C57BL6NJ_G0036566.1 mouse_genomes_project X 135621033 135654904 - Btk protein_coding retained_intron MGP_C57BL6NJ_T0097907.1 MGP_C57BL6NJ_G0036566.1 mouse_genomes_project X 135640727 135654237 - Btk protein_coding processed_transcript MGP_C57BL6NJ_T0097908.1 MGP_C57BL6NJ_G0036566.1 mouse_genomes_project X 135644956 135655334 - Btk protein_coding processed_transcript MGP_C57BL6NJ_T0095964.1 MGP_C57BL6NJ_G0036009.1 mouse_genomes_project X 2244377 2261333 - MGP_C57BL6NJ_P0095964 Ppp1r3f protein_coding protein_coding MGP_C57BL6NJ_T0095965.1 MGP_C57BL6NJ_G0036009.1 mouse_genomes_project X 2246033 2261298 - MGP_C57BL6NJ_P0095965 Ppp1r3f protein_coding protein_coding MGP_C57BL6NJ_T0095966.1 MGP_C57BL6NJ_G0036009.1 mouse_genomes_project X 2246303 2251269 - Ppp1r3f protein_coding processed_transcript MGP_C57BL6NJ_T0095967.1 MGP_C57BL6NJ_G0036009.1 mouse_genomes_project X 2247323 2259893 - MGP_C57BL6NJ_P0095967 Ppp1r3f protein_coding protein_coding MGP_C57BL6NJ_T0095968.1 MGP_C57BL6NJ_G0036009.1 mouse_genomes_project X 2249311 2251300 - Ppp1r3f protein_coding processed_transcript MGP_C57BL6NJ_T0011461.1 MGP_C57BL6NJ_G0009546.1 mouse_genomes_project X 103764225 103764325 - Mir672 miRNA miRNA MGP_C57BL6NJ_T0016943.1 MGP_C57BL6NJ_G0014988.1 mouse_genomes_project X 77386458 77386824 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102077.1 MGP_C57BL6NJ_G0040123.1 mouse_genomes_project X 81089827 81089959 - Gm24470 snoRNA snoRNA MGP_C57BL6NJ_T0102076.1 MGP_C57BL6NJ_G0040122.1 mouse_genomes_project X 80804642 80804779 - Gm24706 snoRNA snoRNA MGP_C57BL6NJ_T0009578.1 MGP_C57BL6NJ_G0007687.1 mouse_genomes_project X 70756494 70757016 + Gm14684 lincRNA lincRNA MGP_C57BL6NJ_T0017193.1 MGP_C57BL6NJ_G0015238.1 mouse_genomes_project X 127585226 127585590 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099191.1 MGP_C57BL6NJ_G0037255.1 mouse_genomes_project X 8262673 8262785 - n-R5s3 rRNA rRNA MGP_C57BL6NJ_T0017061.1 MGP_C57BL6NJ_G0015106.1 mouse_genomes_project X 101584792 101585503 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011474.1 MGP_C57BL6NJ_G0009559.1 mouse_genomes_project X 144266298 144266396 + Mir652 miRNA miRNA MGP_C57BL6NJ_T0017367.1 MGP_C57BL6NJ_G0015412.1 mouse_genomes_project X 163366905 163367188 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002622.1 MGP_C57BL6NJ_G0002509.1 mouse_genomes_project X 103402014 103404024 - TEC TEC MGP_C57BL6NJ_T0017044.1 MGP_C57BL6NJ_G0015089.1 mouse_genomes_project X 98294370 98294765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016868.1 MGP_C57BL6NJ_G0014913.1 mouse_genomes_project X 64410269 64410789 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011423.1 MGP_C57BL6NJ_G0009508.1 mouse_genomes_project X 64209053 64209120 - Mir471 miRNA miRNA MGP_C57BL6NJ_T0005749.1 MGP_C57BL6NJ_G0004841.1 mouse_genomes_project X 67551338 67762109 - antisense antisense MGP_C57BL6NJ_T0098012.1 MGP_C57BL6NJ_G0036598.1 mouse_genomes_project X 138064150 138086551 - MGP_C57BL6NJ_P0098012 Glra4 protein_coding protein_coding MGP_C57BL6NJ_T0098013.1 MGP_C57BL6NJ_G0036598.1 mouse_genomes_project X 138073481 138086551 - Glra4 protein_coding retained_intron MGP_C57BL6NJ_T0097224.1 MGP_C57BL6NJ_G0036358.1 mouse_genomes_project X 73533837 73539923 - MGP_C57BL6NJ_P0097224 Mtcp1 protein_coding protein_coding MGP_C57BL6NJ_T0097225.1 MGP_C57BL6NJ_G0036358.1 mouse_genomes_project X 73534043 73539798 - Mtcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0097226.1 MGP_C57BL6NJ_G0036358.1 mouse_genomes_project X 73534170 73539968 - MGP_C57BL6NJ_P0097226 Mtcp1 protein_coding protein_coding MGP_C57BL6NJ_T0097227.1 MGP_C57BL6NJ_G0036358.1 mouse_genomes_project X 73536553 73539948 - Mtcp1 protein_coding retained_intron MGP_C57BL6NJ_T0017080.1 MGP_C57BL6NJ_G0015125.1 mouse_genomes_project X 103101032 103101433 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097645.1 MGP_C57BL6NJ_G0036478.1 mouse_genomes_project X 102740235 102742700 - MGP_C57BL6NJ_P0097645 Nap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0016737.1 MGP_C57BL6NJ_G0014782.1 mouse_genomes_project X 32212294 32213091 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097235.1 MGP_C57BL6NJ_G0036360.1 mouse_genomes_project X 73658484 73669095 + MGP_C57BL6NJ_P0097235 Vbp1 protein_coding protein_coding MGP_C57BL6NJ_T0097236.1 MGP_C57BL6NJ_G0036360.1 mouse_genomes_project X 73658484 73679960 + MGP_C57BL6NJ_P0097236 Vbp1 protein_coding protein_coding MGP_C57BL6NJ_T0097237.1 MGP_C57BL6NJ_G0036360.1 mouse_genomes_project X 73658502 73666804 + Vbp1 protein_coding retained_intron MGP_C57BL6NJ_T0017159.1 MGP_C57BL6NJ_G0015204.1 mouse_genomes_project X 117470025 117470293 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096634.1 MGP_C57BL6NJ_G0036215.1 mouse_genomes_project X 48605912 48952009 - MGP_C57BL6NJ_P0096634 Gpc3 protein_coding protein_coding MGP_C57BL6NJ_T0096635.1 MGP_C57BL6NJ_G0036215.1 mouse_genomes_project X 48723520 48952038 - MGP_C57BL6NJ_P0096635 Gpc3 protein_coding protein_coding MGP_C57BL6NJ_T0017176.1 MGP_C57BL6NJ_G0015221.1 mouse_genomes_project X 120767130 120767584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017137.1 MGP_C57BL6NJ_G0015182.1 mouse_genomes_project X 112764938 112765917 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100779.1 MGP_C57BL6NJ_G0038825.1 mouse_genomes_project X 44481767 44481868 + Gm22612 snRNA snRNA MGP_C57BL6NJ_T0096360.1 MGP_C57BL6NJ_G0036119.1 mouse_genomes_project X 19316759 19352099 + MGP_C57BL6NJ_P0096360 Gm4907 protein_coding protein_coding MGP_C57BL6NJ_T0096361.1 MGP_C57BL6NJ_G0036119.1 mouse_genomes_project X 19331000 19351989 + MGP_C57BL6NJ_P0096361 Gm4907 protein_coding protein_coding MGP_C57BL6NJ_T0012040.1 MGP_C57BL6NJ_G0010125.1 mouse_genomes_project X 134373857 134374194 - Gm22552 misc_RNA misc_RNA MGP_C57BL6NJ_T0096850.1 MGP_C57BL6NJ_G0036294.1 mouse_genomes_project X 70205462 70424841 - MGP_C57BL6NJ_P0096850 Gabra3 protein_coding protein_coding MGP_C57BL6NJ_T0096851.1 MGP_C57BL6NJ_G0036294.1 mouse_genomes_project X 70207356 70426436 - MGP_C57BL6NJ_P0096851 Gabra3 protein_coding protein_coding MGP_C57BL6NJ_T0103583.1 MGP_C57BL6NJ_G0041375.1 mouse_genomes_project X 73077473 73077611 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102087.1 MGP_C57BL6NJ_G0040133.1 mouse_genomes_project X 121451614 121451742 + Gm22590 snoRNA snoRNA MGP_C57BL6NJ_T0099197.1 MGP_C57BL6NJ_G0037261.1 mouse_genomes_project X 74991787 74991895 - Gm26041 rRNA rRNA MGP_C57BL6NJ_T0017371.1 MGP_C57BL6NJ_G0015416.1 mouse_genomes_project X 165096449 165099624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097545.1 MGP_C57BL6NJ_G0036455.1 mouse_genomes_project X 100706976 100733455 + MGP_C57BL6NJ_P0097545 Nlgn3 protein_coding protein_coding MGP_C57BL6NJ_T0097546.1 MGP_C57BL6NJ_G0036455.1 mouse_genomes_project X 100706993 100726512 + MGP_C57BL6NJ_P0097546 Nlgn3 protein_coding protein_coding MGP_C57BL6NJ_T0097547.1 MGP_C57BL6NJ_G0036455.1 mouse_genomes_project X 100707012 100733788 + MGP_C57BL6NJ_P0097547 Nlgn3 protein_coding protein_coding MGP_C57BL6NJ_T0097548.1 MGP_C57BL6NJ_G0036455.1 mouse_genomes_project X 100708292 100709893 + Nlgn3 protein_coding processed_transcript MGP_C57BL6NJ_T0097549.1 MGP_C57BL6NJ_G0036455.1 mouse_genomes_project X 100722229 100725988 + Nlgn3 protein_coding processed_transcript MGP_C57BL6NJ_T0100800.1 MGP_C57BL6NJ_G0038846.1 mouse_genomes_project X 100648064 100648198 + Gm22472 snRNA snRNA MGP_C57BL6NJ_T0017275.1 MGP_C57BL6NJ_G0015320.1 mouse_genomes_project X 144057601 144058033 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011428.1 MGP_C57BL6NJ_G0009513.1 mouse_genomes_project X 64218991 64219069 - Mir881 miRNA miRNA MGP_C57BL6NJ_T0097647.1 MGP_C57BL6NJ_G0036480.1 mouse_genomes_project X 102965803 103005631 + MGP_C57BL6NJ_P0097647 Chic1 protein_coding protein_coding MGP_C57BL6NJ_T0098581.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167261719 167275843 + MGP_C57BL6NJ_P0098581 Piga protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098582.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167261719 167275838 + MGP_C57BL6NJ_P0098582 Piga protein_coding protein_coding MGP_C57BL6NJ_T0098583.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167261744 167275836 + MGP_C57BL6NJ_P0098583 Piga protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098584.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167261835 167275840 + MGP_C57BL6NJ_P0098584 Piga protein_coding protein_coding MGP_C57BL6NJ_T0098585.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167264510 167273895 + MGP_C57BL6NJ_P0098585 Piga protein_coding protein_coding MGP_C57BL6NJ_T0098586.1 MGP_C57BL6NJ_G0036742.1 mouse_genomes_project X 167267436 167273982 + Piga protein_coding retained_intron MGP_C57BL6NJ_T0009623.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154336975 154366947 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009624.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154337127 154366947 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009625.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154337127 154366947 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009626.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154337204 154366915 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009627.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154354725 154357463 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009628.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154354821 154366922 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0009629.1 MGP_C57BL6NJ_G0007717.1 mouse_genomes_project X 154359248 154366922 - Kantr lincRNA lincRNA MGP_C57BL6NJ_T0097799.1 MGP_C57BL6NJ_G0036530.1 mouse_genomes_project X 112557632 112583933 + Zfp711 protein_coding retained_intron MGP_C57BL6NJ_T0097800.1 MGP_C57BL6NJ_G0036530.1 mouse_genomes_project X 112557632 112596543 + MGP_C57BL6NJ_P0097800 Zfp711 protein_coding protein_coding MGP_C57BL6NJ_T0097801.1 MGP_C57BL6NJ_G0036530.1 mouse_genomes_project X 112557843 112595037 + MGP_C57BL6NJ_P0097801 Zfp711 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097802.1 MGP_C57BL6NJ_G0036530.1 mouse_genomes_project X 112572637 112593391 + MGP_C57BL6NJ_P0097802 Zfp711 protein_coding protein_coding MGP_C57BL6NJ_T0017305.1 MGP_C57BL6NJ_G0015350.1 mouse_genomes_project X 149161202 149162162 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097426.1 MGP_C57BL6NJ_G0036425.1 mouse_genomes_project X 96021376 96024456 + Gpr165 protein_coding retained_intron MGP_C57BL6NJ_T0097427.1 MGP_C57BL6NJ_G0036425.1 mouse_genomes_project X 96021427 96027324 + MGP_C57BL6NJ_P0097427 Gpr165 protein_coding protein_coding MGP_C57BL6NJ_T0097428.1 MGP_C57BL6NJ_G0036425.1 mouse_genomes_project X 96021448 96023721 + Gpr165 protein_coding retained_intron MGP_C57BL6NJ_T0097429.1 MGP_C57BL6NJ_G0036425.1 mouse_genomes_project X 96022132 96027218 + Gpr165 protein_coding retained_intron MGP_C57BL6NJ_T0016899.1 MGP_C57BL6NJ_G0014944.1 mouse_genomes_project X 71276637 71282519 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103569.1 MGP_C57BL6NJ_G0041361.1 mouse_genomes_project X 8233145 8233283 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016898.1 MGP_C57BL6NJ_G0014943.1 mouse_genomes_project X 71189025 71189457 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098057.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140728580 140760886 + MGP_C57BL6NJ_P0098057 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098058.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140728580 140764244 + MGP_C57BL6NJ_P0098058 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098059.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140728582 140764246 + MGP_C57BL6NJ_P0098059 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098060.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140728646 140731824 + Mum1l1 protein_coding retained_intron MGP_C57BL6NJ_T0098061.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140735704 140760713 + MGP_C57BL6NJ_P0098061 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098062.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140735704 140764246 + MGP_C57BL6NJ_P0098062 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098063.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140735704 140764246 + MGP_C57BL6NJ_P0098063 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0098064.1 MGP_C57BL6NJ_G0036614.1 mouse_genomes_project X 140735704 140760952 + MGP_C57BL6NJ_P0098064 Mum1l1 protein_coding protein_coding MGP_C57BL6NJ_T0017015.1 MGP_C57BL6NJ_G0015060.1 mouse_genomes_project X 93507876 93508577 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016955.1 MGP_C57BL6NJ_G0015000.1 mouse_genomes_project X 81160715 81161724 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099206.1 MGP_C57BL6NJ_G0037270.1 mouse_genomes_project X 162036423 162036532 + Gm23806 rRNA rRNA MGP_C57BL6NJ_T0098148.1 MGP_C57BL6NJ_G0036643.1 mouse_genomes_project X 144387473 144496080 - MGP_C57BL6NJ_P0098148 Ammecr1 protein_coding protein_coding MGP_C57BL6NJ_T0096766.1 MGP_C57BL6NJ_G0036271.1 mouse_genomes_project X 65427386 65428973 - MGP_C57BL6NJ_P0096766 4933436I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0016790.1 MGP_C57BL6NJ_G0014835.1 mouse_genomes_project X 47310334 47311191 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017269.1 MGP_C57BL6NJ_G0015314.1 mouse_genomes_project X 143568240 143568600 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0096073.1 MGP_C57BL6NJ_G0036027.1 mouse_genomes_project X 2606840 2611607 - MGP_C57BL6NJ_P0096073 Pqbp1 protein_coding protein_coding MGP_C57BL6NJ_T0096074.1 MGP_C57BL6NJ_G0036027.1 mouse_genomes_project X 2606904 2611317 - MGP_C57BL6NJ_P0096074 Pqbp1 protein_coding protein_coding MGP_C57BL6NJ_T0096075.1 MGP_C57BL6NJ_G0036027.1 mouse_genomes_project X 2607032 2611537 - MGP_C57BL6NJ_P0096075 Pqbp1 protein_coding protein_coding MGP_C57BL6NJ_T0096076.1 MGP_C57BL6NJ_G0036027.1 mouse_genomes_project X 2607115 2611338 - MGP_C57BL6NJ_P0096076 Pqbp1 protein_coding protein_coding MGP_C57BL6NJ_T0096077.1 MGP_C57BL6NJ_G0036027.1 mouse_genomes_project X 2608212 2611234 - MGP_C57BL6NJ_P0096077 Pqbp1 protein_coding protein_coding MGP_C57BL6NJ_T0098421.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160198591 160251444 + MGP_C57BL6NJ_P0098421 Smpx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098422.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160198591 160202694 + MGP_C57BL6NJ_P0098422 Smpx protein_coding protein_coding MGP_C57BL6NJ_T0098423.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160198654 160251442 + MGP_C57BL6NJ_P0098423 Smpx protein_coding protein_coding MGP_C57BL6NJ_T0098424.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160198808 160251442 + MGP_C57BL6NJ_P0098424 Smpx protein_coding protein_coding MGP_C57BL6NJ_T0098425.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160198941 160251067 + MGP_C57BL6NJ_P0098425 Smpx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098426.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160202279 160251094 + MGP_C57BL6NJ_P0098426 Smpx protein_coding protein_coding MGP_C57BL6NJ_T0098427.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160213954 160251064 + Smpx protein_coding retained_intron MGP_C57BL6NJ_T0098428.1 MGP_C57BL6NJ_G0036705.1 mouse_genomes_project X 160220087 160251136 + Smpx protein_coding retained_intron MGP_C57BL6NJ_T0016919.1 MGP_C57BL6NJ_G0014964.1 mouse_genomes_project X 74139173 74140020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098587.1 MGP_C57BL6NJ_G0036743.1 mouse_genomes_project X 167278959 167301864 + MGP_C57BL6NJ_P0098587 Asb11 protein_coding protein_coding MGP_C57BL6NJ_T0098588.1 MGP_C57BL6NJ_G0036743.1 mouse_genomes_project X 167278975 167288963 + Asb11 protein_coding retained_intron MGP_C57BL6NJ_T0098589.1 MGP_C57BL6NJ_G0036743.1 mouse_genomes_project X 167280023 167301858 + MGP_C57BL6NJ_P0098589 Asb11 protein_coding protein_coding MGP_C57BL6NJ_T0097379.1 MGP_C57BL6NJ_G0036413.1 mouse_genomes_project X 93929847 93965902 + MGP_C57BL6NJ_P0097379 Zxdb protein_coding protein_coding MGP_C57BL6NJ_T0098001.1 MGP_C57BL6NJ_G0036595.1 mouse_genomes_project X 137967771 137969019 + MGP_C57BL6NJ_P0098001 protein_coding protein_coding MGP_C57BL6NJ_T0017122.1 MGP_C57BL6NJ_G0015167.1 mouse_genomes_project X 109007777 109008661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016940.1 MGP_C57BL6NJ_G0014985.1 mouse_genomes_project X 76957010 76958119 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017072.1 MGP_C57BL6NJ_G0015117.1 mouse_genomes_project X 102632010 102632523 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097122.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72292146 72295324 + Plxna3 protein_coding processed_transcript MGP_C57BL6NJ_T0097123.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72292146 72307766 + MGP_C57BL6NJ_P0097123 Plxna3 protein_coding protein_coding MGP_C57BL6NJ_T0097124.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72294076 72306619 + MGP_C57BL6NJ_P0097124 Plxna3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0097125.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72295537 72307760 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097126.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72296826 72297784 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097127.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72297406 72298916 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097128.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72298312 72299413 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097129.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72301342 72302393 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097130.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72301425 72302236 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0097131.1 MGP_C57BL6NJ_G0036338.1 mouse_genomes_project X 72304663 72307022 + Plxna3 protein_coding retained_intron MGP_C57BL6NJ_T0098278.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153171695 153294473 + MGP_C57BL6NJ_P0098278 Wnk3 protein_coding protein_coding MGP_C57BL6NJ_T0098279.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153171695 153294473 + MGP_C57BL6NJ_P0098279 Wnk3 protein_coding protein_coding MGP_C57BL6NJ_T0098280.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153171757 153294415 + MGP_C57BL6NJ_P0098280 Wnk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098281.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153171757 153297596 + MGP_C57BL6NJ_P0098281 Wnk3 protein_coding protein_coding MGP_C57BL6NJ_T0098282.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153181367 153202187 + Wnk3 protein_coding processed_transcript MGP_C57BL6NJ_T0098283.1 MGP_C57BL6NJ_G0036668.1 mouse_genomes_project X 153273956 153299439 + Wnk3 protein_coding processed_transcript MGP_C57BL6NJ_T0017385.1 MGP_C57BL6NJ_G0015430.1 mouse_genomes_project X 168603328 168603707 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016802.1 MGP_C57BL6NJ_G0014847.1 mouse_genomes_project X 50219535 50219736 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017229.1 MGP_C57BL6NJ_G0015274.1 mouse_genomes_project X 137580555 137581179 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017293.1 MGP_C57BL6NJ_G0015338.1 mouse_genomes_project X 147353777 147354235 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0097821.1 MGP_C57BL6NJ_G0036537.1 mouse_genomes_project X 116314090 116314437 + MGP_C57BL6NJ_P0097821 protein_coding protein_coding MGP_C57BL6NJ_T0016833.1 MGP_C57BL6NJ_G0014878.1 mouse_genomes_project X 57621905 57622965 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017253.1 MGP_C57BL6NJ_G0015298.1 mouse_genomes_project X 141345797 141345903 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016815.1 MGP_C57BL6NJ_G0014860.1 mouse_genomes_project X 54381546 54382722 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019079.1 MGP_C57BL6NJ_G0016167.1 mouse_genomes_project X 16284025 16313161 + A230072C01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019080.1 MGP_C57BL6NJ_G0016167.1 mouse_genomes_project X 16284455 16313175 + A230072C01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017194.1 MGP_C57BL6NJ_G0015239.1 mouse_genomes_project X 128078124 128078479 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011482.1 MGP_C57BL6NJ_G0009567.1 mouse_genomes_project X 148769103 148769201 + Mir1298 miRNA miRNA MGP_C57BL6NJ_T0096477.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37656780 37681957 - MGP_C57BL6NJ_P0096477 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096478.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37656780 37780721 - MGP_C57BL6NJ_P0096478 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096479.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37658899 37682331 - MGP_C57BL6NJ_P0096479 Thoc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096480.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37659273 37668438 - MGP_C57BL6NJ_P0096480 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096481.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37664337 37668926 - MGP_C57BL6NJ_P0096481 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096482.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37664349 37668590 - MGP_C57BL6NJ_P0096482 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096483.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37665521 37681426 - Thoc2 protein_coding processed_transcript MGP_C57BL6NJ_T0096484.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37675166 37682033 - Thoc2 protein_coding retained_intron MGP_C57BL6NJ_T0096485.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37681908 37728880 - Thoc2 protein_coding processed_transcript MGP_C57BL6NJ_T0096486.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37682304 37702160 - Thoc2 protein_coding retained_intron MGP_C57BL6NJ_T0096487.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37694620 37702295 - Thoc2 protein_coding retained_intron MGP_C57BL6NJ_T0096488.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37726512 37780721 - Thoc2 protein_coding retained_intron MGP_C57BL6NJ_T0096489.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37730050 37780706 - MGP_C57BL6NJ_P0096489 Thoc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096490.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37743855 37789749 - MGP_C57BL6NJ_P0096490 Thoc2 protein_coding protein_coding MGP_C57BL6NJ_T0096491.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37743859 37764908 - MGP_C57BL6NJ_P0096491 Thoc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0096492.1 MGP_C57BL6NJ_G0036171.1 mouse_genomes_project X 37753173 37766363 - Thoc2 protein_coding retained_intron MGP_C57BL6NJ_T0016828.1 MGP_C57BL6NJ_G0014873.1 mouse_genomes_project X 56890818 56891414 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016715.1 MGP_C57BL6NJ_G0014760.1 mouse_genomes_project X 15662862 15663934 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062354.1 MGP_C57BL6NJ_G0027864.1 mouse_genomes_project 3 93366055 93385595 - MGP_C57BL6NJ_P0062354 Chrnb2 protein_coding protein_coding MGP_C57BL6NJ_T0062355.1 MGP_C57BL6NJ_G0027864.1 mouse_genomes_project 3 93372312 93384388 - Chrnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0062356.1 MGP_C57BL6NJ_G0027864.1 mouse_genomes_project 3 93378087 93386758 - MGP_C57BL6NJ_P0062356 Chrnb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064495.1 MGP_C57BL6NJ_G0028350.1 mouse_genomes_project 3 149407877 149410229 - MGP_C57BL6NJ_P0064495 Pdha2 protein_coding protein_coding MGP_C57BL6NJ_T0063008.1 MGP_C57BL6NJ_G0028031.1 mouse_genomes_project 3 100633155 100634785 - MGP_C57BL6NJ_P0063008 Hist2h4 protein_coding protein_coding MGP_C57BL6NJ_T0062978.1 MGP_C57BL6NJ_G0028022.1 mouse_genomes_project 3 100346207 100413410 - MGP_C57BL6NJ_P0062978 Vps45 protein_coding protein_coding MGP_C57BL6NJ_T0062979.1 MGP_C57BL6NJ_G0028022.1 mouse_genomes_project 3 100398029 100412774 - Vps45 protein_coding retained_intron MGP_C57BL6NJ_T0062980.1 MGP_C57BL6NJ_G0028022.1 mouse_genomes_project 3 100411830 100412663 - Vps45 protein_coding processed_transcript MGP_C57BL6NJ_T0011811.1 MGP_C57BL6NJ_G0009896.1 mouse_genomes_project 3 128003555 128003823 + Gm26027 misc_RNA misc_RNA MGP_C57BL6NJ_T0063836.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122847831 122877580 + MGP_C57BL6NJ_P0063836 Sass6 protein_coding protein_coding MGP_C57BL6NJ_T0063837.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122847852 122861264 + Sass6 protein_coding processed_transcript MGP_C57BL6NJ_T0063838.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122847861 122889373 + MGP_C57BL6NJ_P0063838 Sass6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063839.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122847963 122887234 + MGP_C57BL6NJ_P0063839 Sass6 protein_coding protein_coding MGP_C57BL6NJ_T0063841.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122869313 122875230 + Sass6 protein_coding processed_transcript MGP_C57BL6NJ_T0063843.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122877436 122885981 + Sass6 protein_coding retained_intron MGP_C57BL6NJ_T0063844.1 MGP_C57BL6NJ_G0028230.1 mouse_genomes_project 3 122884349 122887552 + Sass6 protein_coding retained_intron MGP_C57BL6NJ_T0010762.1 MGP_C57BL6NJ_G0008847.1 mouse_genomes_project 3 91901428 91901501 - Mir7011 miRNA miRNA MGP_C57BL6NJ_T0061975.1 MGP_C57BL6NJ_G0027801.1 mouse_genomes_project 3 91455081 91465710 - MGP_C57BL6NJ_P0061975 Ttc24 protein_coding protein_coding MGP_C57BL6NJ_T0061976.1 MGP_C57BL6NJ_G0027801.1 mouse_genomes_project 3 91455484 91457732 - MGP_C57BL6NJ_P0061976 Ttc24 protein_coding protein_coding MGP_C57BL6NJ_T0061632.1 MGP_C57BL6NJ_G0027721.1 mouse_genomes_project 3 75959814 76042481 - MGP_C57BL6NJ_P0061632 Bche protein_coding protein_coding MGP_C57BL6NJ_T0061633.1 MGP_C57BL6NJ_G0027721.1 mouse_genomes_project 3 75974033 76042308 - Bche protein_coding retained_intron MGP_C57BL6NJ_T0061634.1 MGP_C57BL6NJ_G0027721.1 mouse_genomes_project 3 76035082 76042333 - MGP_C57BL6NJ_P0061634 Bche protein_coding protein_coding MGP_C57BL6NJ_T0061635.1 MGP_C57BL6NJ_G0027721.1 mouse_genomes_project 3 76037565 76042333 - Bche protein_coding processed_transcript MGP_C57BL6NJ_T0100295.1 MGP_C57BL6NJ_G0038341.1 mouse_genomes_project 3 104505409 104505517 - Gm22505 snRNA snRNA MGP_C57BL6NJ_T0062505.1 MGP_C57BL6NJ_G0027885.1 mouse_genomes_project 3 94213499 94215901 - Snapin protein_coding retained_intron MGP_C57BL6NJ_T0062506.1 MGP_C57BL6NJ_G0027885.1 mouse_genomes_project 3 94213507 94216506 - MGP_C57BL6NJ_P0062506 Snapin protein_coding protein_coding MGP_C57BL6NJ_T0062507.1 MGP_C57BL6NJ_G0027885.1 mouse_genomes_project 3 94213843 94216466 - MGP_C57BL6NJ_P0062507 Snapin protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062508.1 MGP_C57BL6NJ_G0027885.1 mouse_genomes_project 3 94213846 94216497 - MGP_C57BL6NJ_P0062508 Snapin protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062509.1 MGP_C57BL6NJ_G0027885.1 mouse_genomes_project 3 94214472 94216265 - Snapin protein_coding retained_intron MGP_C57BL6NJ_T0001248.1 MGP_C57BL6NJ_G0001151.1 mouse_genomes_project 3 17406994 17407706 - TEC TEC MGP_C57BL6NJ_T0007705.1 MGP_C57BL6NJ_G0006307.1 mouse_genomes_project 3 48907291 48912233 - 1700018B24Rik lincRNA lincRNA MGP_C57BL6NJ_T0001390.1 MGP_C57BL6NJ_G0001291.1 mouse_genomes_project 3 92795322 92798062 + TEC TEC MGP_C57BL6NJ_T0004524.1 MGP_C57BL6NJ_G0003945.1 mouse_genomes_project 3 136924485 136930105 - Gm35986 antisense antisense MGP_C57BL6NJ_T0004525.1 MGP_C57BL6NJ_G0003945.1 mouse_genomes_project 3 136924650 136930384 - Gm35986 antisense antisense MGP_C57BL6NJ_T0062560.1 MGP_C57BL6NJ_G0027904.1 mouse_genomes_project 3 96036079 96038995 - MGP_C57BL6NJ_P0062560 Lor protein_coding protein_coding MGP_C57BL6NJ_T0014629.1 MGP_C57BL6NJ_G0012674.1 mouse_genomes_project 3 127835552 127836547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063880.1 MGP_C57BL6NJ_G0028239.1 mouse_genomes_project 3 123917904 124041328 + MGP_C57BL6NJ_P0063880 Plppr5 protein_coding protein_coding MGP_C57BL6NJ_T0063881.1 MGP_C57BL6NJ_G0028239.1 mouse_genomes_project 3 123918295 124041328 + MGP_C57BL6NJ_P0063881 Plppr5 protein_coding protein_coding MGP_C57BL6NJ_T0064013.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129915289 130086814 - MGP_C57BL6NJ_P0064013 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064014.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129915289 129957306 - MGP_C57BL6NJ_P0064014 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064015.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129915289 130086865 - MGP_C57BL6NJ_P0064015 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064016.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129951098 130086865 - MGP_C57BL6NJ_P0064016 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064017.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129953178 129957482 - MGP_C57BL6NJ_P0064017 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064018.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 129955452 129959171 - MGP_C57BL6NJ_P0064018 Synpo2 protein_coding protein_coding MGP_C57BL6NJ_T0064019.1 MGP_C57BL6NJ_G0028263.1 mouse_genomes_project 3 130019294 130086867 - Synpo2 protein_coding processed_transcript MGP_C57BL6NJ_T0062162.1 MGP_C57BL6NJ_G0027831.1 mouse_genomes_project 3 92479022 92630638 + MGP_C57BL6NJ_P0062162 Ash1l protein_coding protein_coding MGP_C57BL6NJ_T0062164.1 MGP_C57BL6NJ_G0027831.1 mouse_genomes_project 3 92495642 92630636 + MGP_C57BL6NJ_P0062164 Ash1l protein_coding protein_coding MGP_C57BL6NJ_T0062165.1 MGP_C57BL6NJ_G0027831.1 mouse_genomes_project 3 92558179 92563265 + Ash1l protein_coding retained_intron MGP_C57BL6NJ_T0062166.1 MGP_C57BL6NJ_G0027831.1 mouse_genomes_project 3 92591890 92606903 + Ash1l protein_coding retained_intron MGP_C57BL6NJ_T0001397.1 MGP_C57BL6NJ_G0001298.1 mouse_genomes_project 3 99894605 99896209 + TEC TEC MGP_C57BL6NJ_T0061626.1 MGP_C57BL6NJ_G0027719.1 mouse_genomes_project 3 75137249 75222563 - MGP_C57BL6NJ_P0061626 Sis protein_coding protein_coding MGP_C57BL6NJ_T0061627.1 MGP_C57BL6NJ_G0027719.1 mouse_genomes_project 3 75137252 75221566 - MGP_C57BL6NJ_P0061627 Sis protein_coding protein_coding MGP_C57BL6NJ_T0061628.1 MGP_C57BL6NJ_G0027719.1 mouse_genomes_project 3 75204875 75206013 - Sis protein_coding retained_intron MGP_C57BL6NJ_T0061629.1 MGP_C57BL6NJ_G0027719.1 mouse_genomes_project 3 75219791 75222560 - Sis protein_coding retained_intron MGP_C57BL6NJ_T0001297.1 MGP_C57BL6NJ_G0001200.1 mouse_genomes_project 3 41430633 41434684 + TEC TEC MGP_C57BL6NJ_T0062618.1 MGP_C57BL6NJ_G0027950.1 mouse_genomes_project 3 97455463 97461531 + MGP_C57BL6NJ_P0062618 Rptn protein_coding protein_coding MGP_C57BL6NJ_T0063825.1 MGP_C57BL6NJ_G0028228.1 mouse_genomes_project 3 122814220 122824682 + Lrrc39 protein_coding retained_intron MGP_C57BL6NJ_T0063826.1 MGP_C57BL6NJ_G0028228.1 mouse_genomes_project 3 122814225 122835984 + MGP_C57BL6NJ_P0063826 Lrrc39 protein_coding protein_coding MGP_C57BL6NJ_T0014286.1 MGP_C57BL6NJ_G0012331.1 mouse_genomes_project 3 18213695 18214255 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004388.1 MGP_C57BL6NJ_G0003854.1 mouse_genomes_project 3 52324509 52330869 + Gm37229 antisense antisense MGP_C57BL6NJ_T0001486.1 MGP_C57BL6NJ_G0001386.1 mouse_genomes_project 3 138385881 138387260 + TEC TEC MGP_C57BL6NJ_T0061614.1 MGP_C57BL6NJ_G0027715.1 mouse_genomes_project 3 71422210 71456161 - MGP_C57BL6NJ_P0061614 B3galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0007891.1 MGP_C57BL6NJ_G0006453.1 mouse_genomes_project 3 144232215 144247325 - 1700030L20Rik lincRNA lincRNA MGP_C57BL6NJ_T0064433.1 MGP_C57BL6NJ_G0028337.1 mouse_genomes_project 3 145992835 146037024 - MGP_C57BL6NJ_P0064433 Mttp protein_coding protein_coding MGP_C57BL6NJ_T0064434.1 MGP_C57BL6NJ_G0028337.1 mouse_genomes_project 3 145994033 146048175 - MGP_C57BL6NJ_P0064434 Mttp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064435.1 MGP_C57BL6NJ_G0028337.1 mouse_genomes_project 3 145994033 146048134 - MGP_C57BL6NJ_P0064435 Mttp protein_coding protein_coding MGP_C57BL6NJ_T0064436.1 MGP_C57BL6NJ_G0028337.1 mouse_genomes_project 3 146047008 146049714 - Mttp protein_coding retained_intron MGP_C57BL6NJ_T0007668.1 MGP_C57BL6NJ_G0006284.1 mouse_genomes_project 3 33973035 33991405 - Gm3143 lincRNA lincRNA MGP_C57BL6NJ_T0007669.1 MGP_C57BL6NJ_G0006284.1 mouse_genomes_project 3 33984376 33991407 - Gm3143 lincRNA lincRNA MGP_C57BL6NJ_T0007811.1 MGP_C57BL6NJ_G0006389.1 mouse_genomes_project 3 105550337 105557967 + Gm43464 lincRNA lincRNA MGP_C57BL6NJ_T0014691.1 MGP_C57BL6NJ_G0012736.1 mouse_genomes_project 3 146593286 146593475 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001288.1 MGP_C57BL6NJ_G0001191.1 mouse_genomes_project 3 37211776 37214932 + TEC TEC MGP_C57BL6NJ_T0100258.1 MGP_C57BL6NJ_G0038304.1 mouse_genomes_project 3 59981461 59981633 - Gm25572 snRNA snRNA MGP_C57BL6NJ_T0064204.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137416194 137498710 - MGP_C57BL6NJ_P0064204 Sec24b protein_coding protein_coding MGP_C57BL6NJ_T0064205.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137416878 137417956 - Sec24b protein_coding retained_intron MGP_C57BL6NJ_T0064206.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137417047 137417718 - Sec24b protein_coding processed_transcript MGP_C57BL6NJ_T0064207.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137424256 137425997 - Sec24b protein_coding retained_intron MGP_C57BL6NJ_T0064208.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137425911 137475755 - MGP_C57BL6NJ_P0064208 Sec24b protein_coding protein_coding MGP_C57BL6NJ_T0064209.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137442889 137475725 - Sec24b protein_coding retained_intron MGP_C57BL6NJ_T0064210.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137442915 137476031 - MGP_C57BL6NJ_P0064210 Sec24b protein_coding protein_coding MGP_C57BL6NJ_T0064211.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137445289 137466372 - Sec24b protein_coding retained_intron MGP_C57BL6NJ_T0064212.1 MGP_C57BL6NJ_G0028294.1 mouse_genomes_project 3 137476147 137499356 - Sec24b protein_coding processed_transcript MGP_C57BL6NJ_T0099403.1 MGP_C57BL6NJ_G0037460.1 mouse_genomes_project 3 107550298 107553204 + Gm42679 sense_intronic sense_intronic MGP_C57BL6NJ_T0004508.1 MGP_C57BL6NJ_G0003933.1 mouse_genomes_project 3 128213680 128219522 + A530020G20Rik antisense antisense MGP_C57BL6NJ_T0004509.1 MGP_C57BL6NJ_G0003933.1 mouse_genomes_project 3 128213690 128214545 + A530020G20Rik antisense antisense MGP_C57BL6NJ_T0004510.1 MGP_C57BL6NJ_G0003933.1 mouse_genomes_project 3 128213740 128216932 + A530020G20Rik antisense antisense MGP_C57BL6NJ_T0061512.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67528953 67541002 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061513.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67528953 67541052 - MGP_C57BL6NJ_P0061513 Ccnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061514.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67528997 67540835 - MGP_C57BL6NJ_P0061514 Ccnl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061515.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67529311 67540966 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061516.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67529402 67535198 - MGP_C57BL6NJ_P0061516 Ccnl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061517.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67529584 67530801 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061518.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67530756 67539659 - MGP_C57BL6NJ_P0061518 Ccnl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061519.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67531310 67533781 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061520.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67531694 67540984 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061521.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67532703 67539692 - MGP_C57BL6NJ_P0061521 Ccnl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061522.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67533209 67534671 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061523.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67534051 67535796 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061524.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67534236 67540456 - Ccnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061525.1 MGP_C57BL6NJ_G0027693.1 mouse_genomes_project 3 67538048 67540931 - MGP_C57BL6NJ_P0061525 Ccnl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004390.1 MGP_C57BL6NJ_G0003856.1 mouse_genomes_project 3 52811538 52812539 - Gm20402 antisense antisense MGP_C57BL6NJ_T0062537.1 MGP_C57BL6NJ_G0027892.1 mouse_genomes_project 3 94325252 94326511 + MGP_C57BL6NJ_P0062537 S100a2 protein_coding protein_coding MGP_C57BL6NJ_T0061720.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83682853 83752407 - MGP_C57BL6NJ_P0061720 Glrb protein_coding protein_coding MGP_C57BL6NJ_T0061721.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83682853 83752361 - MGP_C57BL6NJ_P0061721 Glrb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061722.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83684215 83750836 - MGP_C57BL6NJ_P0061722 Glrb protein_coding protein_coding MGP_C57BL6NJ_T0061723.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83694618 83752275 - MGP_C57BL6NJ_P0061723 Glrb protein_coding protein_coding MGP_C57BL6NJ_T0061724.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83694625 83696262 - Glrb protein_coding retained_intron MGP_C57BL6NJ_T0061725.1 MGP_C57BL6NJ_G0027739.1 mouse_genomes_project 3 83701126 83752336 - MGP_C57BL6NJ_P0061725 Glrb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063728.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114625177 114625749 + Henmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0063730.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114625363 114629508 + MGP_C57BL6NJ_P0063730 Henmt1 protein_coding protein_coding MGP_C57BL6NJ_T0063731.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114625388 114651718 + MGP_C57BL6NJ_P0063731 Henmt1 protein_coding protein_coding MGP_C57BL6NJ_T0063732.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114625418 114650363 + MGP_C57BL6NJ_P0063732 Henmt1 protein_coding protein_coding MGP_C57BL6NJ_T0063733.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114627274 114651816 + MGP_C57BL6NJ_P0063733 Henmt1 protein_coding protein_coding MGP_C57BL6NJ_T0063734.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114628085 114651257 + MGP_C57BL6NJ_P0063734 Henmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063735.1 MGP_C57BL6NJ_G0028205.1 mouse_genomes_project 3 114628085 114651730 + MGP_C57BL6NJ_P0063735 Henmt1 protein_coding protein_coding MGP_C57BL6NJ_T0099442.1 MGP_C57BL6NJ_G0037499.1 mouse_genomes_project 3 162534083 162545078 - 1700015C17Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0060440.1 MGP_C57BL6NJ_G0027469.1 mouse_genomes_project 3 5924357 5987369 + MGP_C57BL6NJ_P0060440 Stmn2 protein_coding protein_coding MGP_C57BL6NJ_T0060441.1 MGP_C57BL6NJ_G0027469.1 mouse_genomes_project 3 5924512 5966201 + Stmn2 protein_coding retained_intron MGP_C57BL6NJ_T0060442.1 MGP_C57BL6NJ_G0027469.1 mouse_genomes_project 3 5924583 5957473 + Stmn2 protein_coding retained_intron MGP_C57BL6NJ_T0060443.1 MGP_C57BL6NJ_G0027469.1 mouse_genomes_project 3 5986028 5987338 + Stmn2 protein_coding processed_transcript MGP_C57BL6NJ_T0007763.1 MGP_C57BL6NJ_G0006354.1 mouse_genomes_project 3 85727479 85746499 - Gm43348 lincRNA lincRNA MGP_C57BL6NJ_T0010783.1 MGP_C57BL6NJ_G0008868.1 mouse_genomes_project 3 124842864 124842937 + Mir137 miRNA miRNA MGP_C57BL6NJ_T0007791.1 MGP_C57BL6NJ_G0006369.1 mouse_genomes_project 3 96053203 96055484 + Gm43736 lincRNA lincRNA MGP_C57BL6NJ_T0060865.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010379 33026159 + MGP_C57BL6NJ_P0060865 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060866.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010722 33011418 + Ttc14 protein_coding retained_intron MGP_C57BL6NJ_T0060867.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010730 33012036 + Ttc14 protein_coding retained_intron MGP_C57BL6NJ_T0060868.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010738 33013479 + MGP_C57BL6NJ_P0060868 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060869.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010738 33018589 + MGP_C57BL6NJ_P0060869 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060870.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010757 33018444 + MGP_C57BL6NJ_P0060870 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060871.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010760 33020222 + MGP_C57BL6NJ_P0060871 Ttc14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060872.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010760 33022836 + MGP_C57BL6NJ_P0060872 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060873.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010798 33020489 + MGP_C57BL6NJ_P0060873 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060874.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33010810 33018042 + MGP_C57BL6NJ_P0060874 Ttc14 protein_coding protein_coding MGP_C57BL6NJ_T0060875.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33011758 33018576 + MGP_C57BL6NJ_P0060875 Ttc14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060876.1 MGP_C57BL6NJ_G0027564.1 mouse_genomes_project 3 33013084 33013660 + Ttc14 protein_coding retained_intron MGP_C57BL6NJ_T0014272.1 MGP_C57BL6NJ_G0012317.1 mouse_genomes_project 3 13983439 13984500 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061389.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60129559 60146388 - MGP_C57BL6NJ_P0061389 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061390.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60130329 60170944 - MGP_C57BL6NJ_P0061390 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061391.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60130329 60146250 - MGP_C57BL6NJ_P0061391 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061392.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60130330 60146248 - MGP_C57BL6NJ_P0061392 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061393.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60130636 60146953 - MGP_C57BL6NJ_P0061393 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061394.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60131411 60146839 - MGP_C57BL6NJ_P0061394 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061395.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60131715 60146744 - MGP_C57BL6NJ_P0061395 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061396.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60131730 60148081 - MGP_C57BL6NJ_P0061396 P2ry14 protein_coding protein_coding MGP_C57BL6NJ_T0061397.1 MGP_C57BL6NJ_G0027662.1 mouse_genomes_project 3 60163279 60171070 - P2ry14 protein_coding retained_intron MGP_C57BL6NJ_T0064227.1 MGP_C57BL6NJ_G0028297.1 mouse_genomes_project 3 138171109 138184680 - MGP_C57BL6NJ_P0064227 Ostc protein_coding protein_coding MGP_C57BL6NJ_T0064228.1 MGP_C57BL6NJ_G0028297.1 mouse_genomes_project 3 138171116 138171820 - Ostc protein_coding retained_intron MGP_C57BL6NJ_T0064229.1 MGP_C57BL6NJ_G0028297.1 mouse_genomes_project 3 138182932 138184652 - Ostc protein_coding retained_intron MGP_C57BL6NJ_T0103077.1 MGP_C57BL6NJ_G0040871.1 mouse_genomes_project 3 72532839 72533874 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0063568.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113333299 113353186 - MGP_C57BL6NJ_P0063568 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0063569.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113333299 113352953 - MGP_C57BL6NJ_P0063569 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0063570.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113335265 113343231 - MGP_C57BL6NJ_P0063570 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0063571.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113337846 113352959 - MGP_C57BL6NJ_P0063571 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0063572.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113339984 113352959 - Csf1 protein_coding retained_intron MGP_C57BL6NJ_T0063573.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113340793 113342993 - MGP_C57BL6NJ_P0063573 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0063574.1 MGP_C57BL6NJ_G0028171.1 mouse_genomes_project 3 113342631 113352938 - MGP_C57BL6NJ_P0063574 Csf1 protein_coding protein_coding MGP_C57BL6NJ_T0001265.1 MGP_C57BL6NJ_G0001168.1 mouse_genomes_project 3 31048492 31052602 + TEC TEC MGP_C57BL6NJ_T0001474.1 MGP_C57BL6NJ_G0001375.1 mouse_genomes_project 3 135077013 135077695 - TEC TEC MGP_C57BL6NJ_T0011807.1 MGP_C57BL6NJ_G0009892.1 mouse_genomes_project 3 100807727 100808150 - Terc misc_RNA misc_RNA MGP_C57BL6NJ_T0099558.1 MGP_C57BL6NJ_G0037605.1 mouse_genomes_project 3 153932305 153933332 + D530037P16Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0001261.1 MGP_C57BL6NJ_G0001164.1 mouse_genomes_project 3 29477199 29478067 + TEC TEC MGP_C57BL6NJ_T0001309.1 MGP_C57BL6NJ_G0001212.1 mouse_genomes_project 3 51021334 51024474 - TEC TEC MGP_C57BL6NJ_T0007802.1 MGP_C57BL6NJ_G0006380.1 mouse_genomes_project 3 100792888 100793753 - 4930477E14Rik lincRNA lincRNA MGP_C57BL6NJ_T0063638.1 MGP_C57BL6NJ_G0028188.1 mouse_genomes_project 3 113898250 113922461 + MGP_C57BL6NJ_P0063638 Psma5 protein_coding protein_coding MGP_C57BL6NJ_T0063639.1 MGP_C57BL6NJ_G0028188.1 mouse_genomes_project 3 113911361 113922383 + MGP_C57BL6NJ_P0063639 Psma5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063631.1 MGP_C57BL6NJ_G0028186.1 mouse_genomes_project 3 113846095 113854808 - MGP_C57BL6NJ_P0063631 Atxn7l2 protein_coding protein_coding MGP_C57BL6NJ_T0063632.1 MGP_C57BL6NJ_G0028186.1 mouse_genomes_project 3 113846101 113852448 - Atxn7l2 protein_coding retained_intron MGP_C57BL6NJ_T0063633.1 MGP_C57BL6NJ_G0028186.1 mouse_genomes_project 3 113846232 113854315 - MGP_C57BL6NJ_P0063633 Atxn7l2 protein_coding protein_coding MGP_C57BL6NJ_T0063634.1 MGP_C57BL6NJ_G0028186.1 mouse_genomes_project 3 113850955 113853445 - MGP_C57BL6NJ_P0063634 Atxn7l2 protein_coding protein_coding MGP_C57BL6NJ_T0063635.1 MGP_C57BL6NJ_G0028186.1 mouse_genomes_project 3 113852849 113854342 - Atxn7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0004516.1 MGP_C57BL6NJ_G0003938.1 mouse_genomes_project 3 130307589 130310709 - Gm43591 antisense antisense MGP_C57BL6NJ_T0063996.1 MGP_C57BL6NJ_G0028259.1 mouse_genomes_project 3 129747004 129753290 - MGP_C57BL6NJ_P0063996 Gm10959 protein_coding protein_coding MGP_C57BL6NJ_T0101580.1 MGP_C57BL6NJ_G0039626.1 mouse_genomes_project 3 72127650 72127778 - Gm23477 snoRNA snoRNA MGP_C57BL6NJ_T0101561.1 MGP_C57BL6NJ_G0039607.1 mouse_genomes_project 3 26604594 26604755 + Gm26040 snoRNA snoRNA MGP_C57BL6NJ_T0014471.1 MGP_C57BL6NJ_G0012516.1 mouse_genomes_project 3 77217592 77218217 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062641.1 MGP_C57BL6NJ_G0027965.1 mouse_genomes_project 3 98526930 98529059 + MGP_C57BL6NJ_P0062641 C2cd4d protein_coding protein_coding MGP_C57BL6NJ_T0062642.1 MGP_C57BL6NJ_G0027965.1 mouse_genomes_project 3 98526995 98527657 + C2cd4d protein_coding retained_intron MGP_C57BL6NJ_T0063769.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119630890 119660229 - MGP_C57BL6NJ_P0063769 Rnpc3 protein_coding protein_coding MGP_C57BL6NJ_T0063770.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119633390 119660229 - MGP_C57BL6NJ_P0063770 Rnpc3 protein_coding protein_coding MGP_C57BL6NJ_T0063771.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119634262 119660229 - MGP_C57BL6NJ_P0063771 Rnpc3 protein_coding protein_coding MGP_C57BL6NJ_T0063772.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119635713 119660113 - MGP_C57BL6NJ_P0063772 Rnpc3 protein_coding protein_coding MGP_C57BL6NJ_T0063773.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119640411 119644545 - Rnpc3 protein_coding processed_transcript MGP_C57BL6NJ_T0063774.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119645657 119652045 - Rnpc3 protein_coding processed_transcript MGP_C57BL6NJ_T0063775.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119645906 119651396 - Rnpc3 protein_coding processed_transcript MGP_C57BL6NJ_T0063776.1 MGP_C57BL6NJ_G0028216.1 mouse_genomes_project 3 119657157 119660159 - Rnpc3 protein_coding retained_intron MGP_C57BL6NJ_T0014673.1 MGP_C57BL6NJ_G0012718.1 mouse_genomes_project 3 142823693 142824282 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062317.1 MGP_C57BL6NJ_G0027857.1 mouse_genomes_project 3 93016273 93019181 - MGP_C57BL6NJ_P0062317 Cks1b protein_coding protein_coding MGP_C57BL6NJ_T0062318.1 MGP_C57BL6NJ_G0027857.1 mouse_genomes_project 3 93016358 93018815 - MGP_C57BL6NJ_P0062318 Cks1b protein_coding protein_coding MGP_C57BL6NJ_T0062319.1 MGP_C57BL6NJ_G0027857.1 mouse_genomes_project 3 93016645 93019017 - MGP_C57BL6NJ_P0062319 Cks1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018447.1 MGP_C57BL6NJ_G0015910.1 mouse_genomes_project 3 111966325 111970249 - 2010016I18Rik processed_transcript antisense MGP_C57BL6NJ_T0018448.1 MGP_C57BL6NJ_G0015910.1 mouse_genomes_project 3 111966343 111968170 - 2010016I18Rik processed_transcript antisense MGP_C57BL6NJ_T0018449.1 MGP_C57BL6NJ_G0015910.1 mouse_genomes_project 3 111966356 111967797 - 2010016I18Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018450.1 MGP_C57BL6NJ_G0015910.1 mouse_genomes_project 3 111966356 111967781 - 2010016I18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018451.1 MGP_C57BL6NJ_G0015910.1 mouse_genomes_project 3 111968405 111970184 - 2010016I18Rik processed_transcript retained_intron MGP_C57BL6NJ_T0061561.1 MGP_C57BL6NJ_G0027704.1 mouse_genomes_project 3 69571925 70363878 + MGP_C57BL6NJ_P0061561 Gm21949 protein_coding protein_coding MGP_C57BL6NJ_T0014495.1 MGP_C57BL6NJ_G0012540.1 mouse_genomes_project 3 88289371 88290032 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100244.1 MGP_C57BL6NJ_G0038290.1 mouse_genomes_project 3 35119249 35119354 + Gm25696 snRNA snRNA MGP_C57BL6NJ_T0064620.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095486 154120930 + MGP_C57BL6NJ_P0064620 Znhit6 protein_coding protein_coding MGP_C57BL6NJ_T0064621.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095513 154121612 + MGP_C57BL6NJ_P0064621 Znhit6 protein_coding protein_coding MGP_C57BL6NJ_T0064622.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095528 154097812 + MGP_C57BL6NJ_P0064622 Znhit6 protein_coding protein_coding MGP_C57BL6NJ_T0064623.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095539 154112317 + MGP_C57BL6NJ_P0064623 Znhit6 protein_coding protein_coding MGP_C57BL6NJ_T0064624.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095555 154101918 + MGP_C57BL6NJ_P0064624 Znhit6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064625.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154095617 154110743 + MGP_C57BL6NJ_P0064625 Znhit6 protein_coding protein_coding MGP_C57BL6NJ_T0064626.1 MGP_C57BL6NJ_G0028374.1 mouse_genomes_project 3 154113519 154120829 + Znhit6 protein_coding retained_intron MGP_C57BL6NJ_T0004403.1 MGP_C57BL6NJ_G0003866.1 mouse_genomes_project 3 62630082 62633431 - Gm37696 antisense antisense MGP_C57BL6NJ_T0007819.1 MGP_C57BL6NJ_G0006395.1 mouse_genomes_project 3 107665282 107667503 + Gm42678 lincRNA lincRNA MGP_C57BL6NJ_T0063338.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108922946 108974552 - MGP_C57BL6NJ_P0063338 Hipk1 protein_coding protein_coding MGP_C57BL6NJ_T0063339.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108926693 108974064 - MGP_C57BL6NJ_P0063339 Hipk1 protein_coding protein_coding MGP_C57BL6NJ_T0063340.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108926791 108974245 - MGP_C57BL6NJ_P0063340 Hipk1 protein_coding protein_coding MGP_C57BL6NJ_T0063341.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108928287 108974550 - MGP_C57BL6NJ_P0063341 Hipk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063342.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108931245 108934197 - Hipk1 protein_coding retained_intron MGP_C57BL6NJ_T0063343.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108932494 108934146 - Hipk1 protein_coding retained_intron MGP_C57BL6NJ_T0063344.1 MGP_C57BL6NJ_G0028113.1 mouse_genomes_project 3 108937288 108974264 - Hipk1 protein_coding retained_intron MGP_C57BL6NJ_T0061375.1 MGP_C57BL6NJ_G0027657.1 mouse_genomes_project 3 59573944 59606851 - MGP_C57BL6NJ_P0061375 Erich6 protein_coding protein_coding MGP_C57BL6NJ_T0061376.1 MGP_C57BL6NJ_G0027657.1 mouse_genomes_project 3 59573954 59598925 - MGP_C57BL6NJ_P0061376 Erich6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007697.1 MGP_C57BL6NJ_G0006304.1 mouse_genomes_project 3 41111908 41116217 - Gm42434 lincRNA lincRNA MGP_C57BL6NJ_T0007698.1 MGP_C57BL6NJ_G0006304.1 mouse_genomes_project 3 41116092 41116723 - Gm42434 lincRNA lincRNA MGP_C57BL6NJ_T0064261.1 MGP_C57BL6NJ_G0028304.1 mouse_genomes_project 3 139566005 139670578 + MGP_C57BL6NJ_P0064261 Dkk2 protein_coding protein_coding MGP_C57BL6NJ_T0007856.1 MGP_C57BL6NJ_G0006423.1 mouse_genomes_project 3 128393744 128402408 - Gm43608 lincRNA lincRNA MGP_C57BL6NJ_T0064346.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143155830 143182919 + MGP_C57BL6NJ_P0064346 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064347.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143155997 143182968 + MGP_C57BL6NJ_P0064347 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064348.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156210 143159279 + Ube2d3 protein_coding processed_transcript MGP_C57BL6NJ_T0064349.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156214 143177677 + MGP_C57BL6NJ_P0064349 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064350.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156224 143180723 + MGP_C57BL6NJ_P0064350 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064351.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156246 143186544 + MGP_C57BL6NJ_P0064351 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064352.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156428 143172931 + MGP_C57BL6NJ_P0064352 Ube2d3 protein_coding protein_coding MGP_C57BL6NJ_T0064353.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156435 143182979 + MGP_C57BL6NJ_P0064353 Ube2d3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064354.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143156545 143175845 + Ube2d3 protein_coding retained_intron MGP_C57BL6NJ_T0064355.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143172307 143177721 + Ube2d3 protein_coding retained_intron MGP_C57BL6NJ_T0064356.1 MGP_C57BL6NJ_G0028321.1 mouse_genomes_project 3 143176329 143178368 + Ube2d3 protein_coding retained_intron MGP_C57BL6NJ_T0014644.1 MGP_C57BL6NJ_G0012689.1 mouse_genomes_project 3 130883619 130884627 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063597.1 MGP_C57BL6NJ_G0028178.1 mouse_genomes_project 3 113628242 113637896 - MGP_C57BL6NJ_P0063597 Gstm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063598.1 MGP_C57BL6NJ_G0028178.1 mouse_genomes_project 3 113628247 113638094 - MGP_C57BL6NJ_P0063598 Gstm1 protein_coding protein_coding MGP_C57BL6NJ_T0063599.1 MGP_C57BL6NJ_G0028178.1 mouse_genomes_project 3 113628253 113629309 - Gstm1 protein_coding processed_transcript MGP_C57BL6NJ_T0063600.1 MGP_C57BL6NJ_G0028178.1 mouse_genomes_project 3 113628383 113636721 - MGP_C57BL6NJ_P0063600 Gstm1 protein_coding protein_coding MGP_C57BL6NJ_T0063601.1 MGP_C57BL6NJ_G0028178.1 mouse_genomes_project 3 113628619 113637927 - MGP_C57BL6NJ_P0063601 Gstm1 protein_coding protein_coding MGP_C57BL6NJ_T0014584.1 MGP_C57BL6NJ_G0012629.1 mouse_genomes_project 3 113375811 113376427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004358.1 MGP_C57BL6NJ_G0003833.1 mouse_genomes_project 3 27595559 27599304 - antisense antisense MGP_C57BL6NJ_T0063193.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105412919 105540616 - MGP_C57BL6NJ_P0063193 Man1a2 protein_coding protein_coding MGP_C57BL6NJ_T0063194.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105440433 105507347 - Man1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0063195.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105472270 105539726 - MGP_C57BL6NJ_P0063195 Man1a2 protein_coding protein_coding MGP_C57BL6NJ_T0063196.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105498101 105540238 - MGP_C57BL6NJ_P0063196 Man1a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063197.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105510815 105540421 - Man1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0063198.1 MGP_C57BL6NJ_G0028083.1 mouse_genomes_project 3 105539706 105540572 - Man1a2 protein_coding processed_transcript MGP_C57BL6NJ_T0001482.1 MGP_C57BL6NJ_G0001382.1 mouse_genomes_project 3 138034100 138035999 + TEC TEC MGP_C57BL6NJ_T0103093.1 MGP_C57BL6NJ_G0040887.1 mouse_genomes_project 3 97824173 98117971 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014631.1 MGP_C57BL6NJ_G0012676.1 mouse_genomes_project 3 127937898 127938670 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014306.1 MGP_C57BL6NJ_G0012351.1 mouse_genomes_project 3 28701031 28701170 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001436.1 MGP_C57BL6NJ_G0001337.1 mouse_genomes_project 3 128100380 128101666 + TEC TEC MGP_C57BL6NJ_T0064046.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131481605 131507965 - MGP_C57BL6NJ_P0064046 1700003H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0064047.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131481605 131507965 - MGP_C57BL6NJ_P0064047 1700003H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0064048.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131491141 131507966 - MGP_C57BL6NJ_P0064048 1700003H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0064049.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131500109 131507975 - MGP_C57BL6NJ_P0064049 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064050.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131500110 131505375 - MGP_C57BL6NJ_P0064050 1700003H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0064051.1 MGP_C57BL6NJ_G0028270.1 mouse_genomes_project 3 131500110 131507968 - MGP_C57BL6NJ_P0064051 1700003H04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062453.1 MGP_C57BL6NJ_G0027876.1 mouse_genomes_project 3 93932220 93936286 + MGP_C57BL6NJ_P0062453 Jtb protein_coding protein_coding MGP_C57BL6NJ_T0062454.1 MGP_C57BL6NJ_G0027876.1 mouse_genomes_project 3 93932235 93935992 + MGP_C57BL6NJ_P0062454 Jtb protein_coding protein_coding MGP_C57BL6NJ_T0062455.1 MGP_C57BL6NJ_G0027876.1 mouse_genomes_project 3 93932257 93935867 + Jtb protein_coding retained_intron MGP_C57BL6NJ_T0062456.1 MGP_C57BL6NJ_G0027876.1 mouse_genomes_project 3 93932670 93934450 + Jtb protein_coding retained_intron MGP_C57BL6NJ_T0014621.1 MGP_C57BL6NJ_G0012666.1 mouse_genomes_project 3 123297977 123298707 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099263.1 MGP_C57BL6NJ_G0037327.1 mouse_genomes_project 3 70863501 70863844 - Gm22009 scaRNA scaRNA MGP_C57BL6NJ_T0099090.1 MGP_C57BL6NJ_G0037154.1 mouse_genomes_project 3 24068775 24068883 + Gm22832 rRNA rRNA MGP_C57BL6NJ_T0010777.1 MGP_C57BL6NJ_G0008862.1 mouse_genomes_project 3 108853933 108854019 - Gm25325 miRNA miRNA MGP_C57BL6NJ_T0101574.1 MGP_C57BL6NJ_G0039620.1 mouse_genomes_project 3 57268304 57268435 - Gm25727 snoRNA snoRNA MGP_C57BL6NJ_T0101569.1 MGP_C57BL6NJ_G0039615.1 mouse_genomes_project 3 47349770 47349908 + Gm23891 snoRNA snoRNA MGP_C57BL6NJ_T0001444.1 MGP_C57BL6NJ_G0001345.1 mouse_genomes_project 3 130008377 130008977 - TEC TEC MGP_C57BL6NJ_T0103078.1 MGP_C57BL6NJ_G0040872.1 mouse_genomes_project 3 82987573 82987724 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014231.1 MGP_C57BL6NJ_G0012276.1 mouse_genomes_project 3 3416133 3416555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004371.1 MGP_C57BL6NJ_G0003842.1 mouse_genomes_project 3 33028554 33029245 + Gm43140 antisense antisense MGP_C57BL6NJ_T0014254.1 MGP_C57BL6NJ_G0012299.1 mouse_genomes_project 3 8710000 8710189 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101579.1 MGP_C57BL6NJ_G0039625.1 mouse_genomes_project 3 71839951 71840082 - Gm23484 snoRNA snoRNA MGP_C57BL6NJ_T0099433.1 MGP_C57BL6NJ_G0037490.1 mouse_genomes_project 3 111170304 111172457 - Gm43330 sense_intronic sense_intronic MGP_C57BL6NJ_T0103079.1 MGP_C57BL6NJ_G0040873.1 mouse_genomes_project 3 83844968 83845436 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101606.1 MGP_C57BL6NJ_G0039652.1 mouse_genomes_project 3 118107704 118107831 - Gm25519 snoRNA snoRNA MGP_C57BL6NJ_T0062344.1 MGP_C57BL6NJ_G0027862.1 mouse_genomes_project 3 93134662 93285750 + MGP_C57BL6NJ_P0062344 Kcnn3 protein_coding protein_coding MGP_C57BL6NJ_T0062345.1 MGP_C57BL6NJ_G0027862.1 mouse_genomes_project 3 93280508 93293138 + Kcnn3 protein_coding retained_intron MGP_C57BL6NJ_T0060420.1 MGP_C57BL6NJ_G0027463.1 mouse_genomes_project 3 2455001 2651748 + MGP_C57BL6NJ_P0060420 Zfhx4 protein_coding protein_coding MGP_C57BL6NJ_T0060421.1 MGP_C57BL6NJ_G0027463.1 mouse_genomes_project 3 2455021 2568180 + Zfhx4 protein_coding retained_intron MGP_C57BL6NJ_T0060422.1 MGP_C57BL6NJ_G0027463.1 mouse_genomes_project 3 2455029 2654438 + MGP_C57BL6NJ_P0060422 Zfhx4 protein_coding protein_coding MGP_C57BL6NJ_T0060423.1 MGP_C57BL6NJ_G0027463.1 mouse_genomes_project 3 2457759 2479338 + MGP_C57BL6NJ_P0060423 Zfhx4 protein_coding protein_coding MGP_C57BL6NJ_T0060424.1 MGP_C57BL6NJ_G0027463.1 mouse_genomes_project 3 2478991 2654440 + MGP_C57BL6NJ_P0060424 Zfhx4 protein_coding protein_coding MGP_C57BL6NJ_T0062220.1 MGP_C57BL6NJ_G0027840.1 mouse_genomes_project 3 92787825 92793577 + MGP_C57BL6NJ_P0062220 Gba protein_coding protein_coding MGP_C57BL6NJ_T0062221.1 MGP_C57BL6NJ_G0027840.1 mouse_genomes_project 3 92787833 92793579 + MGP_C57BL6NJ_P0062221 Gba protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062222.1 MGP_C57BL6NJ_G0027840.1 mouse_genomes_project 3 92787837 92793579 + MGP_C57BL6NJ_P0062222 Gba protein_coding protein_coding MGP_C57BL6NJ_T0062223.1 MGP_C57BL6NJ_G0027840.1 mouse_genomes_project 3 92790382 92791286 + Gba protein_coding retained_intron MGP_C57BL6NJ_T0062224.1 MGP_C57BL6NJ_G0027840.1 mouse_genomes_project 3 92793114 92793864 + Gba protein_coding retained_intron MGP_C57BL6NJ_T0001538.1 MGP_C57BL6NJ_G0001438.1 mouse_genomes_project 3 167774799 167779138 + TEC TEC MGP_C57BL6NJ_T0014501.1 MGP_C57BL6NJ_G0012546.1 mouse_genomes_project 3 90318641 90319588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062565.1 MGP_C57BL6NJ_G0027909.1 mouse_genomes_project 3 96329952 96331259 + MGP_C57BL6NJ_P0062565 Sprr2e protein_coding protein_coding MGP_C57BL6NJ_T0061954.1 MGP_C57BL6NJ_G0027795.1 mouse_genomes_project 3 91323264 91327975 + MGP_C57BL6NJ_P0061954 Crabp2 protein_coding protein_coding MGP_C57BL6NJ_T0061955.1 MGP_C57BL6NJ_G0027795.1 mouse_genomes_project 3 91326742 91327584 + Crabp2 protein_coding retained_intron MGP_C57BL6NJ_T0014296.1 MGP_C57BL6NJ_G0012341.1 mouse_genomes_project 3 20912039 20912809 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064147.1 MGP_C57BL6NJ_G0028282.1 mouse_genomes_project 3 135082943 135116049 - MGP_C57BL6NJ_P0064147 5730508B09Rik protein_coding protein_coding MGP_C57BL6NJ_T0064148.1 MGP_C57BL6NJ_G0028282.1 mouse_genomes_project 3 135083565 135116013 - MGP_C57BL6NJ_P0064148 5730508B09Rik protein_coding protein_coding MGP_C57BL6NJ_T0062682.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98662562 98757159 - MGP_C57BL6NJ_P0062682 Snx27 protein_coding protein_coding MGP_C57BL6NJ_T0062683.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98664331 98756992 - MGP_C57BL6NJ_P0062683 Snx27 protein_coding protein_coding MGP_C57BL6NJ_T0062684.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98666059 98694865 - Snx27 protein_coding processed_transcript MGP_C57BL6NJ_T0062685.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98666145 98757122 - MGP_C57BL6NJ_P0062685 Snx27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062686.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98666155 98689665 - Snx27 protein_coding processed_transcript MGP_C57BL6NJ_T0062687.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98667075 98733867 - MGP_C57BL6NJ_P0062687 Snx27 protein_coding protein_coding MGP_C57BL6NJ_T0062688.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98689683 98733630 - MGP_C57BL6NJ_P0062688 Snx27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062689.1 MGP_C57BL6NJ_G0027973.1 mouse_genomes_project 3 98701817 98702466 - Snx27 protein_coding processed_transcript MGP_C57BL6NJ_T0001277.1 MGP_C57BL6NJ_G0001180.1 mouse_genomes_project 3 33933531 33934162 - TEC TEC MGP_C57BL6NJ_T0014340.1 MGP_C57BL6NJ_G0012385.1 mouse_genomes_project 3 38704984 38705357 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101589.1 MGP_C57BL6NJ_G0039635.1 mouse_genomes_project 3 89516058 89516189 - Gm26343 snoRNA snoRNA MGP_C57BL6NJ_T0062187.1 MGP_C57BL6NJ_G0027836.1 mouse_genomes_project 3 92716078 92739925 - MGP_C57BL6NJ_P0062187 Hcn3 protein_coding protein_coding MGP_C57BL6NJ_T0062188.1 MGP_C57BL6NJ_G0027836.1 mouse_genomes_project 3 92724549 92727050 - Hcn3 protein_coding retained_intron MGP_C57BL6NJ_T0062189.1 MGP_C57BL6NJ_G0027836.1 mouse_genomes_project 3 92724666 92727032 - Hcn3 protein_coding retained_intron MGP_C57BL6NJ_T0062190.1 MGP_C57BL6NJ_G0027836.1 mouse_genomes_project 3 92727298 92739709 - Hcn3 protein_coding processed_transcript MGP_C57BL6NJ_T0064651.1 MGP_C57BL6NJ_G0028382.1 mouse_genomes_project 3 154655722 154702621 + MGP_C57BL6NJ_P0064651 Mcoln2 protein_coding protein_coding MGP_C57BL6NJ_T0064652.1 MGP_C57BL6NJ_G0028382.1 mouse_genomes_project 3 154655868 154679289 + Mcoln2 protein_coding retained_intron MGP_C57BL6NJ_T0064653.1 MGP_C57BL6NJ_G0028382.1 mouse_genomes_project 3 154656063 154702620 + MGP_C57BL6NJ_P0064653 Mcoln2 protein_coding protein_coding MGP_C57BL6NJ_T0064654.1 MGP_C57BL6NJ_G0028382.1 mouse_genomes_project 3 154697208 154699594 + MGP_C57BL6NJ_P0064654 Mcoln2 protein_coding protein_coding MGP_C57BL6NJ_T0064655.1 MGP_C57BL6NJ_G0028382.1 mouse_genomes_project 3 154699190 154702248 + Mcoln2 protein_coding retained_intron MGP_C57BL6NJ_T0007645.1 MGP_C57BL6NJ_G0006262.1 mouse_genomes_project 3 18845860 18848967 - Gm31466 lincRNA lincRNA MGP_C57BL6NJ_T0011812.1 MGP_C57BL6NJ_G0009897.1 mouse_genomes_project 3 131806865 131807163 + Gm23673 misc_RNA misc_RNA MGP_C57BL6NJ_T0063092.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101697525 101715357 + MGP_C57BL6NJ_P0063092 Acp6 protein_coding protein_coding MGP_C57BL6NJ_T0063093.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101697844 101699144 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063094.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101697851 101707091 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063095.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101697851 101705830 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063096.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101706157 101707233 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063097.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101706874 101712652 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063098.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101709930 101712681 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063099.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101711422 101715301 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0063100.1 MGP_C57BL6NJ_G0028056.1 mouse_genomes_project 3 101712791 101716082 + Acp6 protein_coding retained_intron MGP_C57BL6NJ_T0001433.1 MGP_C57BL6NJ_G0001334.1 mouse_genomes_project 3 127678335 127679032 - TEC TEC MGP_C57BL6NJ_T0014513.1 MGP_C57BL6NJ_G0012558.1 mouse_genomes_project 3 94508072 94510144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014221.1 MGP_C57BL6NJ_G0012266.1 mouse_genomes_project 3 1357768 1359095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007877.1 MGP_C57BL6NJ_G0006440.1 mouse_genomes_project 3 138353439 138356191 + Gm43351 lincRNA lincRNA MGP_C57BL6NJ_T0061757.1 MGP_C57BL6NJ_G0027748.1 mouse_genomes_project 3 85772198 85815448 - MGP_C57BL6NJ_P0061757 Rbm46 protein_coding protein_coding MGP_C57BL6NJ_T0061758.1 MGP_C57BL6NJ_G0027748.1 mouse_genomes_project 3 85772801 85805623 - MGP_C57BL6NJ_P0061758 Rbm46 protein_coding protein_coding MGP_C57BL6NJ_T0061759.1 MGP_C57BL6NJ_G0027748.1 mouse_genomes_project 3 85772804 85805623 - MGP_C57BL6NJ_P0061759 Rbm46 protein_coding protein_coding MGP_C57BL6NJ_T0103074.1 MGP_C57BL6NJ_G0040868.1 mouse_genomes_project 3 65709680 65713837 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014365.1 MGP_C57BL6NJ_G0012410.1 mouse_genomes_project 3 48279487 48286514 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063345.1 MGP_C57BL6NJ_G0028114.1 mouse_genomes_project 3 108986165 108992606 - Dclre1b protein_coding retained_intron MGP_C57BL6NJ_T0063346.1 MGP_C57BL6NJ_G0028114.1 mouse_genomes_project 3 108986248 108992369 - MGP_C57BL6NJ_P0063346 Dclre1b protein_coding protein_coding MGP_C57BL6NJ_T0063347.1 MGP_C57BL6NJ_G0028114.1 mouse_genomes_project 3 108986879 108990917 - Dclre1b protein_coding retained_intron MGP_C57BL6NJ_T0063348.1 MGP_C57BL6NJ_G0028114.1 mouse_genomes_project 3 108987307 108992473 - MGP_C57BL6NJ_P0063348 Dclre1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063349.1 MGP_C57BL6NJ_G0028114.1 mouse_genomes_project 3 108989214 108992670 - MGP_C57BL6NJ_P0063349 Dclre1b protein_coding protein_coding MGP_C57BL6NJ_T0004551.1 MGP_C57BL6NJ_G0003964.1 mouse_genomes_project 3 153167906 153185727 + antisense antisense MGP_C57BL6NJ_T0007774.1 MGP_C57BL6NJ_G0006364.1 mouse_genomes_project 3 91596793 91602285 - AI849053 lincRNA lincRNA MGP_C57BL6NJ_T0062589.1 MGP_C57BL6NJ_G0027930.1 mouse_genomes_project 3 96703922 96705596 - MGP_C57BL6NJ_P0062589 Lce1e protein_coding protein_coding MGP_C57BL6NJ_T0103096.1 MGP_C57BL6NJ_G0040890.1 mouse_genomes_project 3 98036390 98036772 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001361.1 MGP_C57BL6NJ_G0001262.1 mouse_genomes_project 3 61718263 61722243 + TEC TEC MGP_C57BL6NJ_T0014218.1 MGP_C57BL6NJ_G0012263.1 mouse_genomes_project 3 918586 919056 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101614.1 MGP_C57BL6NJ_G0039660.1 mouse_genomes_project 3 131421140 131421270 + Gm22900 snoRNA snoRNA MGP_C57BL6NJ_T0060444.1 MGP_C57BL6NJ_G0027470.1 mouse_genomes_project 3 6096584 6100482 - MGP_C57BL6NJ_P0060444 Hey1 protein_coding protein_coding MGP_C57BL6NJ_T0060445.1 MGP_C57BL6NJ_G0027470.1 mouse_genomes_project 3 6097924 6100210 - Hey1 protein_coding retained_intron MGP_C57BL6NJ_T0060446.1 MGP_C57BL6NJ_G0027470.1 mouse_genomes_project 3 6098021 6099851 - Hey1 protein_coding retained_intron MGP_C57BL6NJ_T0060447.1 MGP_C57BL6NJ_G0027470.1 mouse_genomes_project 3 6098767 6100190 - Hey1 protein_coding retained_intron MGP_C57BL6NJ_T0062534.1 MGP_C57BL6NJ_G0027891.1 mouse_genomes_project 3 94295737 94320343 + S100a3 protein_coding processed_transcript MGP_C57BL6NJ_T0062535.1 MGP_C57BL6NJ_G0027891.1 mouse_genomes_project 3 94319676 94339061 + MGP_C57BL6NJ_P0062535 S100a3 protein_coding protein_coding MGP_C57BL6NJ_T0062536.1 MGP_C57BL6NJ_G0027891.1 mouse_genomes_project 3 94321969 94339107 + MGP_C57BL6NJ_P0062536 S100a3 protein_coding protein_coding MGP_C57BL6NJ_T0062538.1 MGP_C57BL6NJ_G0027891.1 mouse_genomes_project 3 94336797 94339285 + MGP_C57BL6NJ_P0062538 S100a3 protein_coding protein_coding MGP_C57BL6NJ_T0062539.1 MGP_C57BL6NJ_G0027891.1 mouse_genomes_project 3 94336827 94339285 + S100a3 protein_coding retained_intron MGP_C57BL6NJ_T0060945.1 MGP_C57BL6NJ_G0027577.1 mouse_genomes_project 3 35922770 35929133 + MGP_C57BL6NJ_P0060945 1810062G17Rik protein_coding protein_coding MGP_C57BL6NJ_T0004502.1 MGP_C57BL6NJ_G0003927.1 mouse_genomes_project 3 114695233 114697304 + Gm43221 antisense antisense MGP_C57BL6NJ_T0007623.1 MGP_C57BL6NJ_G0006250.1 mouse_genomes_project 3 9548645 9569960 - Gm10745 lincRNA lincRNA MGP_C57BL6NJ_T0060877.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33022906 33057438 - MGP_C57BL6NJ_P0060877 Ccdc39 protein_coding protein_coding MGP_C57BL6NJ_T0060878.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33023598 33025850 - Ccdc39 protein_coding retained_intron MGP_C57BL6NJ_T0060879.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33029946 33057438 - Ccdc39 protein_coding retained_intron MGP_C57BL6NJ_T0060880.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33031485 33057212 - Ccdc39 protein_coding retained_intron MGP_C57BL6NJ_T0060881.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33037740 33039695 - Ccdc39 protein_coding retained_intron MGP_C57BL6NJ_T0060882.1 MGP_C57BL6NJ_G0027565.1 mouse_genomes_project 3 33051132 33057447 - Ccdc39 protein_coding retained_intron MGP_C57BL6NJ_T0014437.1 MGP_C57BL6NJ_G0012482.1 mouse_genomes_project 3 68562050 68562372 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103116.1 MGP_C57BL6NJ_G0040910.1 mouse_genomes_project 3 112046934 112047349 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014442.1 MGP_C57BL6NJ_G0012487.1 mouse_genomes_project 3 70038544 70039125 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001405.1 MGP_C57BL6NJ_G0001306.1 mouse_genomes_project 3 101815821 101817010 - TEC TEC MGP_C57BL6NJ_T0099415.1 MGP_C57BL6NJ_G0037472.1 mouse_genomes_project 3 109346612 109352138 - Gm42702 sense_intronic sense_intronic MGP_C57BL6NJ_T0064948.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167485113 167511592 - MGP_C57BL6NJ_P0064948 Srsf11 protein_coding protein_coding MGP_C57BL6NJ_T0064949.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167485284 167498168 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064950.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167485559 167506675 - MGP_C57BL6NJ_P0064950 Srsf11 protein_coding protein_coding MGP_C57BL6NJ_T0064951.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167486143 167497886 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064952.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167486509 167511504 - MGP_C57BL6NJ_P0064952 Srsf11 protein_coding protein_coding MGP_C57BL6NJ_T0064953.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167486534 167487161 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064954.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167486983 167487788 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064955.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167486991 167496750 - MGP_C57BL6NJ_P0064955 Srsf11 protein_coding protein_coding MGP_C57BL6NJ_T0064956.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167488618 167498415 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064957.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167490950 167492743 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064958.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167494019 167511549 - MGP_C57BL6NJ_P0064958 Srsf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064959.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167494059 167511568 - MGP_C57BL6NJ_P0064959 Srsf11 protein_coding protein_coding MGP_C57BL6NJ_T0064960.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167496758 167506364 - MGP_C57BL6NJ_P0064960 Srsf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064961.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167497675 167506480 - MGP_C57BL6NJ_P0064961 Srsf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064962.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167498154 167511559 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064963.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167499482 167511564 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064964.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167501271 167506669 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064965.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167505102 167506663 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0064966.1 MGP_C57BL6NJ_G0028428.1 mouse_genomes_project 3 167505726 167511567 - Srsf11 protein_coding retained_intron MGP_C57BL6NJ_T0018434.1 MGP_C57BL6NJ_G0015903.1 mouse_genomes_project 3 98520999 98525335 - Gm36070 processed_transcript lincRNA MGP_C57BL6NJ_T0018435.1 MGP_C57BL6NJ_G0015903.1 mouse_genomes_project 3 98521818 98523705 - Gm36070 processed_transcript retained_intron MGP_C57BL6NJ_T0014649.1 MGP_C57BL6NJ_G0012694.1 mouse_genomes_project 3 133526000 133526208 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010756.1 MGP_C57BL6NJ_G0008841.1 mouse_genomes_project 3 83511893 83512004 - Gm25749 miRNA miRNA MGP_C57BL6NJ_T0062634.1 MGP_C57BL6NJ_G0027962.1 mouse_genomes_project 3 98339633 98422641 + MGP_C57BL6NJ_P0062634 protein_coding protein_coding MGP_C57BL6NJ_T0061212.1 MGP_C57BL6NJ_G0027623.1 mouse_genomes_project 3 54064294 54079135 - MGP_C57BL6NJ_P0061212 Nhlrc3 protein_coding protein_coding MGP_C57BL6NJ_T0061213.1 MGP_C57BL6NJ_G0027623.1 mouse_genomes_project 3 54064299 54079126 - MGP_C57BL6NJ_P0061213 Nhlrc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061214.1 MGP_C57BL6NJ_G0027623.1 mouse_genomes_project 3 54074172 54077786 - Nhlrc3 protein_coding retained_intron MGP_C57BL6NJ_T0061215.1 MGP_C57BL6NJ_G0027623.1 mouse_genomes_project 3 54074677 54079054 - Nhlrc3 protein_coding retained_intron MGP_C57BL6NJ_T0061216.1 MGP_C57BL6NJ_G0027623.1 mouse_genomes_project 3 54077865 54079100 - Nhlrc3 protein_coding retained_intron MGP_C57BL6NJ_T0101603.1 MGP_C57BL6NJ_G0039649.1 mouse_genomes_project 3 109418830 109418946 + Gm23077 snoRNA snoRNA MGP_C57BL6NJ_T0001497.1 MGP_C57BL6NJ_G0001397.1 mouse_genomes_project 3 143397842 143401739 - TEC TEC MGP_C57BL6NJ_T0014449.1 MGP_C57BL6NJ_G0012494.1 mouse_genomes_project 3 71141785 71142895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060463.1 MGP_C57BL6NJ_G0027475.1 mouse_genomes_project 3 7249361 7405779 - MGP_C57BL6NJ_P0060463 Pag1 protein_coding protein_coding MGP_C57BL6NJ_T0060464.1 MGP_C57BL6NJ_G0027475.1 mouse_genomes_project 3 7253753 7405730 - MGP_C57BL6NJ_P0060464 Pag1 protein_coding protein_coding MGP_C57BL6NJ_T0060465.1 MGP_C57BL6NJ_G0027475.1 mouse_genomes_project 3 7254622 7266858 - Pag1 protein_coding retained_intron MGP_C57BL6NJ_T0060466.1 MGP_C57BL6NJ_G0027475.1 mouse_genomes_project 3 7317141 7405463 - Pag1 protein_coding retained_intron MGP_C57BL6NJ_T0060467.1 MGP_C57BL6NJ_G0027475.1 mouse_genomes_project 3 7399535 7405730 - Pag1 protein_coding processed_transcript MGP_C57BL6NJ_T0004429.1 MGP_C57BL6NJ_G0003885.1 mouse_genomes_project 3 92365915 92420614 - antisense antisense MGP_C57BL6NJ_T0001345.1 MGP_C57BL6NJ_G0001246.1 mouse_genomes_project 3 54391623 54393225 + TEC TEC MGP_C57BL6NJ_T0103066.1 MGP_C57BL6NJ_G0040860.1 mouse_genomes_project 3 12709710 12720243 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014668.1 MGP_C57BL6NJ_G0012713.1 mouse_genomes_project 3 141979218 141979717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060883.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239313 33298615 + MGP_C57BL6NJ_P0060883 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060884.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239468 33298644 + MGP_C57BL6NJ_P0060884 Fxr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060885.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239475 33298618 + MGP_C57BL6NJ_P0060885 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060886.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239478 33298618 + MGP_C57BL6NJ_P0060886 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060887.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239478 33299595 + MGP_C57BL6NJ_P0060887 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060888.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33239483 33293601 + MGP_C57BL6NJ_P0060888 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060889.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33261479 33263613 + Fxr1 protein_coding retained_intron MGP_C57BL6NJ_T0060890.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33261482 33273947 + MGP_C57BL6NJ_P0060890 Fxr1 protein_coding protein_coding MGP_C57BL6NJ_T0060891.1 MGP_C57BL6NJ_G0027566.1 mouse_genomes_project 3 33274041 33276525 + Fxr1 protein_coding retained_intron MGP_C57BL6NJ_T0014298.1 MGP_C57BL6NJ_G0012343.1 mouse_genomes_project 3 23514999 23515282 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010766.1 MGP_C57BL6NJ_G0008851.1 mouse_genomes_project 3 93723933 93724013 + Mir190b miRNA miRNA MGP_C57BL6NJ_T0007757.1 MGP_C57BL6NJ_G0006348.1 mouse_genomes_project 3 83091975 83142990 - Gm37971 lincRNA lincRNA MGP_C57BL6NJ_T0004512.1 MGP_C57BL6NJ_G0003935.1 mouse_genomes_project 3 129217071 129251083 - Gm42836 antisense antisense MGP_C57BL6NJ_T0060642.1 MGP_C57BL6NJ_G0027523.1 mouse_genomes_project 3 23943487 24936301 - MGP_C57BL6NJ_P0060642 Nlgn1 protein_coding protein_coding MGP_C57BL6NJ_T0060643.1 MGP_C57BL6NJ_G0027523.1 mouse_genomes_project 3 23949071 24717189 - MGP_C57BL6NJ_P0060643 Nlgn1 protein_coding protein_coding MGP_C57BL6NJ_T0060644.1 MGP_C57BL6NJ_G0027523.1 mouse_genomes_project 3 23949071 24717189 - MGP_C57BL6NJ_P0060644 Nlgn1 protein_coding protein_coding MGP_C57BL6NJ_T0060645.1 MGP_C57BL6NJ_G0027523.1 mouse_genomes_project 3 23950691 24740045 - MGP_C57BL6NJ_P0060645 Nlgn1 protein_coding protein_coding MGP_C57BL6NJ_T0060646.1 MGP_C57BL6NJ_G0027523.1 mouse_genomes_project 3 24715124 24935711 - Nlgn1 protein_coding retained_intron MGP_C57BL6NJ_T0064509.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150476334 150637019 - MGP_C57BL6NJ_P0064509 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064510.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150479424 150633549 - MGP_C57BL6NJ_P0064510 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064511.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150479424 150633549 - MGP_C57BL6NJ_P0064511 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064512.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150479424 150633549 - MGP_C57BL6NJ_P0064512 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064513.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150479424 150636904 - MGP_C57BL6NJ_P0064513 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064514.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150481205 150483294 - Pdlim5 protein_coding retained_intron MGP_C57BL6NJ_T0064515.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150486112 150542803 - MGP_C57BL6NJ_P0064515 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064516.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150486171 150543266 - MGP_C57BL6NJ_P0064516 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064517.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150540903 150633591 - MGP_C57BL6NJ_P0064517 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064518.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150541138 150636933 - MGP_C57BL6NJ_P0064518 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064519.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150541143 150633591 - MGP_C57BL6NJ_P0064519 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064520.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150542044 150636944 - MGP_C57BL6NJ_P0064520 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064521.1 MGP_C57BL6NJ_G0028353.1 mouse_genomes_project 3 150542151 150637022 - MGP_C57BL6NJ_P0064521 Pdlim5 protein_coding protein_coding MGP_C57BL6NJ_T0064044.1 MGP_C57BL6NJ_G0028269.1 mouse_genomes_project 3 131320807 131345863 - MGP_C57BL6NJ_P0064044 1700006A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0064045.1 MGP_C57BL6NJ_G0028269.1 mouse_genomes_project 3 131321042 131345814 - MGP_C57BL6NJ_P0064045 1700006A11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001300.1 MGP_C57BL6NJ_G0001203.1 mouse_genomes_project 3 44621034 44625955 + TEC TEC MGP_C57BL6NJ_T0061853.1 MGP_C57BL6NJ_G0027774.1 mouse_genomes_project 3 89801450 89805105 - MGP_C57BL6NJ_P0061853 Mab21l2 protein_coding protein_coding MGP_C57BL6NJ_T0061854.1 MGP_C57BL6NJ_G0027774.1 mouse_genomes_project 3 89802871 89805449 - Mab21l2 protein_coding processed_pseudogene MGP_C57BL6NJ_T0004392.1 MGP_C57BL6NJ_G0003858.1 mouse_genomes_project 3 53692172 53695188 - Gm43803 antisense antisense MGP_C57BL6NJ_T0004393.1 MGP_C57BL6NJ_G0003858.1 mouse_genomes_project 3 53692189 53693492 - Gm43803 antisense antisense MGP_C57BL6NJ_T0014567.1 MGP_C57BL6NJ_G0012612.1 mouse_genomes_project 3 107442484 107442952 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063530.1 MGP_C57BL6NJ_G0028159.1 mouse_genomes_project 3 112787434 112792988 + MGP_C57BL6NJ_P0063530 A630076J17Rik protein_coding protein_coding MGP_C57BL6NJ_T0001247.1 MGP_C57BL6NJ_G0001150.1 mouse_genomes_project 3 16842252 16846232 + TEC TEC MGP_C57BL6NJ_T0102230.1 MGP_C57BL6NJ_G0040231.1 mouse_genomes_project 3 56634374 56635338 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102231.1 MGP_C57BL6NJ_G0040231.1 mouse_genomes_project 3 56634533 56635670 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0001293.1 MGP_C57BL6NJ_G0001196.1 mouse_genomes_project 3 39235972 39238691 + TEC TEC MGP_C57BL6NJ_T0001273.1 MGP_C57BL6NJ_G0001176.1 mouse_genomes_project 3 33172790 33173738 + TEC TEC MGP_C57BL6NJ_T0010775.1 MGP_C57BL6NJ_G0008860.1 mouse_genomes_project 3 102319696 102319750 - Mir7225 miRNA miRNA MGP_C57BL6NJ_T0014720.1 MGP_C57BL6NJ_G0012765.1 mouse_genomes_project 3 161054785 161055341 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063448.1 MGP_C57BL6NJ_G0028137.1 mouse_genomes_project 3 111258138 111297556 + MGP_C57BL6NJ_P0063448 Adora3 protein_coding protein_coding MGP_C57BL6NJ_T0063453.1 MGP_C57BL6NJ_G0028137.1 mouse_genomes_project 3 111293623 111298129 + MGP_C57BL6NJ_P0063453 Adora3 protein_coding protein_coding MGP_C57BL6NJ_T0063455.1 MGP_C57BL6NJ_G0028137.1 mouse_genomes_project 3 111293897 111295560 + Adora3 protein_coding retained_intron MGP_C57BL6NJ_T0060582.1 MGP_C57BL6NJ_G0027513.1 mouse_genomes_project 3 17981302 17983298 - MGP_C57BL6NJ_P0060582 Crh protein_coding protein_coding MGP_C57BL6NJ_T0014370.1 MGP_C57BL6NJ_G0012415.1 mouse_genomes_project 3 50032068 50032603 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101568.1 MGP_C57BL6NJ_G0039614.1 mouse_genomes_project 3 46353857 46353989 + Gm26081 snoRNA snoRNA MGP_C57BL6NJ_T0062591.1 MGP_C57BL6NJ_G0027932.1 mouse_genomes_project 3 96742894 96744453 - MGP_C57BL6NJ_P0062591 Gm38119 protein_coding protein_coding MGP_C57BL6NJ_T0062559.1 MGP_C57BL6NJ_G0027903.1 mouse_genomes_project 3 95961844 95979959 + MGP_C57BL6NJ_P0062559 Pglyrp3 protein_coding protein_coding MGP_C57BL6NJ_T0011804.1 MGP_C57BL6NJ_G0009889.1 mouse_genomes_project 3 85726160 85726402 - Gm22038 misc_RNA misc_RNA MGP_C57BL6NJ_T0014452.1 MGP_C57BL6NJ_G0012497.1 mouse_genomes_project 3 71406629 71415517 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014271.1 MGP_C57BL6NJ_G0012316.1 mouse_genomes_project 3 13927391 13928481 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062603.1 MGP_C57BL6NJ_G0027943.1 mouse_genomes_project 3 97024806 97028076 + MGP_C57BL6NJ_P0062603 protein_coding protein_coding MGP_C57BL6NJ_T0061563.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 69757723 70363876 + MGP_C57BL6NJ_P0061563 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061564.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 69757723 70363876 + MGP_C57BL6NJ_P0061564 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061565.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70197482 70363893 + MGP_C57BL6NJ_P0061565 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061566.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70225793 70356071 + MGP_C57BL6NJ_P0061566 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061567.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70226510 70363875 + MGP_C57BL6NJ_P0061567 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061568.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70309798 70363876 + MGP_C57BL6NJ_P0061568 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061569.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70321717 70363876 + MGP_C57BL6NJ_P0061569 Schip1 protein_coding protein_coding MGP_C57BL6NJ_T0061570.1 MGP_C57BL6NJ_G0027705.1 mouse_genomes_project 3 70333711 70335700 + Schip1 protein_coding retained_intron MGP_C57BL6NJ_T0014552.1 MGP_C57BL6NJ_G0012597.1 mouse_genomes_project 3 103936895 103937424 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009652.1 MGP_C57BL6NJ_G0007737.1 mouse_genomes_project 3 153457725 153468160 + Gm43742 macro_lncRNA macro_lncRNA MGP_C57BL6NJ_T0007670.1 MGP_C57BL6NJ_G0006285.1 mouse_genomes_project 3 34065993 34076017 + Gm38509 lincRNA lincRNA MGP_C57BL6NJ_T0014289.1 MGP_C57BL6NJ_G0012334.1 mouse_genomes_project 3 19121913 19122123 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010744.1 MGP_C57BL6NJ_G0008829.1 mouse_genomes_project 3 34226435 34226542 - Mir6378 miRNA miRNA MGP_C57BL6NJ_T0103082.1 MGP_C57BL6NJ_G0040876.1 mouse_genomes_project 3 91784711 91785750 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014395.1 MGP_C57BL6NJ_G0012440.1 mouse_genomes_project 3 58231964 58233011 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061499.1 MGP_C57BL6NJ_G0027690.1 mouse_genomes_project 3 66924805 66937765 - MGP_C57BL6NJ_P0061499 Ssr3 protein_coding protein_coding MGP_C57BL6NJ_T0061500.1 MGP_C57BL6NJ_G0027690.1 mouse_genomes_project 3 66926830 66928532 - Ssr3 protein_coding retained_intron MGP_C57BL6NJ_T0061501.1 MGP_C57BL6NJ_G0027690.1 mouse_genomes_project 3 66927180 66937695 - MGP_C57BL6NJ_P0061501 Ssr3 protein_coding protein_coding MGP_C57BL6NJ_T0060649.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25754441 25818728 - MGP_C57BL6NJ_P0060649 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060650.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25754441 25818745 - MGP_C57BL6NJ_P0060650 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060651.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25754442 25818721 - MGP_C57BL6NJ_P0060651 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060652.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25754445 25818717 - MGP_C57BL6NJ_P0060652 Ect2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060653.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25755525 25779105 - MGP_C57BL6NJ_P0060653 Ect2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060654.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25779149 25785026 - Ect2 protein_coding retained_intron MGP_C57BL6NJ_T0060655.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25784211 25818679 - Ect2 protein_coding retained_intron MGP_C57BL6NJ_T0060656.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25793774 25801387 - Ect2 protein_coding retained_intron MGP_C57BL6NJ_T0060657.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25809816 25812068 - Ect2 protein_coding retained_intron MGP_C57BL6NJ_T0060658.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25809886 25818721 - MGP_C57BL6NJ_P0060658 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060659.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25810834 25818695 - MGP_C57BL6NJ_P0060659 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060660.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25810850 25818677 - MGP_C57BL6NJ_P0060660 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0060661.1 MGP_C57BL6NJ_G0027525.1 mouse_genomes_project 3 25810894 25818649 - MGP_C57BL6NJ_P0060661 Ect2 protein_coding protein_coding MGP_C57BL6NJ_T0001501.1 MGP_C57BL6NJ_G0001401.1 mouse_genomes_project 3 144577673 144578676 - TEC TEC MGP_C57BL6NJ_T0007734.1 MGP_C57BL6NJ_G0006329.1 mouse_genomes_project 3 61993692 62000055 + Gm38326 lincRNA lincRNA MGP_C57BL6NJ_T0001366.1 MGP_C57BL6NJ_G0001267.1 mouse_genomes_project 3 67429772 67431333 - TEC TEC MGP_C57BL6NJ_T0014487.1 MGP_C57BL6NJ_G0012532.1 mouse_genomes_project 3 83207870 83208188 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007770.1 MGP_C57BL6NJ_G0006360.1 mouse_genomes_project 3 88560720 88593838 - Gm42813 lincRNA lincRNA MGP_C57BL6NJ_T0063441.1 MGP_C57BL6NJ_G0028134.1 mouse_genomes_project 3 111053396 111063856 - MGP_C57BL6NJ_P0063441 Ddx20 protein_coding protein_coding MGP_C57BL6NJ_T0063442.1 MGP_C57BL6NJ_G0028134.1 mouse_genomes_project 3 111054746 111063734 - MGP_C57BL6NJ_P0063442 Ddx20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063443.1 MGP_C57BL6NJ_G0028134.1 mouse_genomes_project 3 111056615 111063726 - Ddx20 protein_coding retained_intron MGP_C57BL6NJ_T0063209.1 MGP_C57BL6NJ_G0028087.1 mouse_genomes_project 3 105885159 105923485 - MGP_C57BL6NJ_P0063209 Cd101 protein_coding protein_coding MGP_C57BL6NJ_T0063210.1 MGP_C57BL6NJ_G0028087.1 mouse_genomes_project 3 105885162 105916156 - MGP_C57BL6NJ_P0063210 Cd101 protein_coding protein_coding MGP_C57BL6NJ_T0001384.1 MGP_C57BL6NJ_G0001285.1 mouse_genomes_project 3 87082397 87093825 - TEC TEC MGP_C57BL6NJ_T0004541.1 MGP_C57BL6NJ_G0003957.1 mouse_genomes_project 3 146005354 146019447 + Gm43691 antisense antisense MGP_C57BL6NJ_T0007858.1 MGP_C57BL6NJ_G0006425.1 mouse_genomes_project 3 129059624 129071584 + Gm40190 lincRNA lincRNA MGP_C57BL6NJ_T0014418.1 MGP_C57BL6NJ_G0012463.1 mouse_genomes_project 3 63351483 63353775 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063786.1 MGP_C57BL6NJ_G0028219.1 mouse_genomes_project 3 121901890 121906530 - MGP_C57BL6NJ_P0063786 S1pr1 protein_coding protein_coding MGP_C57BL6NJ_T0101597.1 MGP_C57BL6NJ_G0039643.1 mouse_genomes_project 3 100539591 100539718 + Gm22027 snoRNA snoRNA MGP_C57BL6NJ_T0062936.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100153807 100180762 - MGP_C57BL6NJ_P0062936 Prpf3 protein_coding protein_coding MGP_C57BL6NJ_T0062937.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100154272 100159349 - MGP_C57BL6NJ_P0062937 Prpf3 protein_coding protein_coding MGP_C57BL6NJ_T0062938.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100154301 100174419 - Prpf3 protein_coding retained_intron MGP_C57BL6NJ_T0062939.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100154305 100156492 - Prpf3 protein_coding retained_intron MGP_C57BL6NJ_T0062940.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100154305 100180630 - MGP_C57BL6NJ_P0062940 Prpf3 protein_coding protein_coding MGP_C57BL6NJ_T0062941.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100160172 100170012 - Prpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0062942.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100168649 100171021 - Prpf3 protein_coding retained_intron MGP_C57BL6NJ_T0062943.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100172287 100178477 - MGP_C57BL6NJ_P0062943 Prpf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062944.1 MGP_C57BL6NJ_G0028014.1 mouse_genomes_project 3 100174380 100180658 - Prpf3 protein_coding retained_intron MGP_C57BL6NJ_T0014671.1 MGP_C57BL6NJ_G0012716.1 mouse_genomes_project 3 142655922 142657224 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062312.1 MGP_C57BL6NJ_G0027856.1 mouse_genomes_project 3 92999962 93012722 - MGP_C57BL6NJ_P0062312 Flad1 protein_coding protein_coding MGP_C57BL6NJ_T0062313.1 MGP_C57BL6NJ_G0027856.1 mouse_genomes_project 3 93000927 93012715 - MGP_C57BL6NJ_P0062313 Flad1 protein_coding protein_coding MGP_C57BL6NJ_T0062314.1 MGP_C57BL6NJ_G0027856.1 mouse_genomes_project 3 93001625 93012721 - MGP_C57BL6NJ_P0062314 Flad1 protein_coding protein_coding MGP_C57BL6NJ_T0062315.1 MGP_C57BL6NJ_G0027856.1 mouse_genomes_project 3 93009581 93012633 - MGP_C57BL6NJ_P0062315 Flad1 protein_coding protein_coding MGP_C57BL6NJ_T0062316.1 MGP_C57BL6NJ_G0027856.1 mouse_genomes_project 3 93009806 93012722 - MGP_C57BL6NJ_P0062316 Flad1 protein_coding protein_coding MGP_C57BL6NJ_T0007630.1 MGP_C57BL6NJ_G0006254.1 mouse_genomes_project 3 12921193 12945766 + A930001A20Rik lincRNA lincRNA MGP_C57BL6NJ_T0063088.1 MGP_C57BL6NJ_G0028054.1 mouse_genomes_project 3 101373389 101567448 + MGP_C57BL6NJ_P0063088 Gja5 protein_coding protein_coding MGP_C57BL6NJ_T0063090.1 MGP_C57BL6NJ_G0028054.1 mouse_genomes_project 3 101507731 101526155 + MGP_C57BL6NJ_P0063090 Gja5 protein_coding protein_coding MGP_C57BL6NJ_T0063091.1 MGP_C57BL6NJ_G0028054.1 mouse_genomes_project 3 101507731 101528926 + MGP_C57BL6NJ_P0063091 Gja5 protein_coding protein_coding MGP_C57BL6NJ_T0007833.1 MGP_C57BL6NJ_G0006406.1 mouse_genomes_project 3 113638414 113647590 - Gm12498 lincRNA lincRNA MGP_C57BL6NJ_T0063075.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101297370 101319887 + MGP_C57BL6NJ_P0063075 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0063076.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101297549 101319972 + MGP_C57BL6NJ_P0063076 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0063077.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101298162 101339540 + MGP_C57BL6NJ_P0063077 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0063078.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101300240 101339360 + MGP_C57BL6NJ_P0063078 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0063079.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101300257 101339086 + MGP_C57BL6NJ_P0063079 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0063080.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101300257 101339210 + MGP_C57BL6NJ_P0063080 Pdzk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063081.1 MGP_C57BL6NJ_G0028052.1 mouse_genomes_project 3 101301312 101318611 + MGP_C57BL6NJ_P0063081 Pdzk1 protein_coding protein_coding MGP_C57BL6NJ_T0014388.1 MGP_C57BL6NJ_G0012433.1 mouse_genomes_project 3 54704089 54704497 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001294.1 MGP_C57BL6NJ_G0001197.1 mouse_genomes_project 3 40458776 40459763 - TEC TEC MGP_C57BL6NJ_T0063139.1 MGP_C57BL6NJ_G0028066.1 mouse_genomes_project 3 102819993 102821435 + MGP_C57BL6NJ_P0063139 Adam30 protein_coding protein_coding MGP_C57BL6NJ_T0063140.1 MGP_C57BL6NJ_G0028066.1 mouse_genomes_project 3 102820023 102823533 + MGP_C57BL6NJ_P0063140 Adam30 protein_coding protein_coding MGP_C57BL6NJ_T0014398.1 MGP_C57BL6NJ_G0012443.1 mouse_genomes_project 3 58662255 58662958 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014387.1 MGP_C57BL6NJ_G0012432.1 mouse_genomes_project 3 54335842 54336299 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014374.1 MGP_C57BL6NJ_G0012419.1 mouse_genomes_project 3 50594611 50594843 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063923.1 MGP_C57BL6NJ_G0028245.1 mouse_genomes_project 3 127952512 127984801 + MGP_C57BL6NJ_P0063923 Alg14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063924.1 MGP_C57BL6NJ_G0028245.1 mouse_genomes_project 3 127952562 128027992 + MGP_C57BL6NJ_P0063924 Alg14 protein_coding protein_coding MGP_C57BL6NJ_T0063925.1 MGP_C57BL6NJ_G0028245.1 mouse_genomes_project 3 127952604 127985265 + MGP_C57BL6NJ_P0063925 Alg14 protein_coding protein_coding MGP_C57BL6NJ_T0061339.1 MGP_C57BL6NJ_G0027649.1 mouse_genomes_project 3 58534922 58548604 - MGP_C57BL6NJ_P0061339 Commd2 protein_coding protein_coding MGP_C57BL6NJ_T0061340.1 MGP_C57BL6NJ_G0027649.1 mouse_genomes_project 3 58540290 58548597 - MGP_C57BL6NJ_P0061340 Commd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061341.1 MGP_C57BL6NJ_G0027649.1 mouse_genomes_project 3 58547990 58548604 - Commd2 protein_coding retained_intron MGP_C57BL6NJ_T0063062.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101161937 101179366 - MGP_C57BL6NJ_P0063062 Polr3c protein_coding protein_coding MGP_C57BL6NJ_T0063063.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101161970 101179179 - MGP_C57BL6NJ_P0063063 Polr3c protein_coding protein_coding MGP_C57BL6NJ_T0063064.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101166900 101175538 - MGP_C57BL6NJ_P0063064 Polr3c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063065.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101170441 101179214 - Polr3c protein_coding retained_intron MGP_C57BL6NJ_T0063066.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101175138 101179192 - MGP_C57BL6NJ_P0063066 Polr3c protein_coding protein_coding MGP_C57BL6NJ_T0063067.1 MGP_C57BL6NJ_G0028049.1 mouse_genomes_project 3 101175141 101179213 - MGP_C57BL6NJ_P0063067 Polr3c protein_coding protein_coding MGP_C57BL6NJ_T0001511.1 MGP_C57BL6NJ_G0001411.1 mouse_genomes_project 3 160036702 160042685 - TEC TEC MGP_C57BL6NJ_T0100262.1 MGP_C57BL6NJ_G0038308.1 mouse_genomes_project 3 67080781 67080874 + Gm22279 snRNA snRNA MGP_C57BL6NJ_T0001348.1 MGP_C57BL6NJ_G0001249.1 mouse_genomes_project 3 56302237 56304255 + TEC TEC MGP_C57BL6NJ_T0001413.1 MGP_C57BL6NJ_G0001314.1 mouse_genomes_project 3 112061071 112063103 + TEC TEC MGP_C57BL6NJ_T0061365.1 MGP_C57BL6NJ_G0027654.1 mouse_genomes_project 3 59470978 59477054 - MGP_C57BL6NJ_P0061365 Serp1 protein_coding protein_coding MGP_C57BL6NJ_T0063153.1 MGP_C57BL6NJ_G0028072.1 mouse_genomes_project 3 103421548 103439531 - MGP_C57BL6NJ_P0063153 Hsd3b2 protein_coding protein_coding MGP_C57BL6NJ_T0063154.1 MGP_C57BL6NJ_G0028072.1 mouse_genomes_project 3 103421947 103430802 - MGP_C57BL6NJ_P0063154 Hsd3b2 protein_coding protein_coding MGP_C57BL6NJ_T0001362.1 MGP_C57BL6NJ_G0001263.1 mouse_genomes_project 3 61790356 61793730 + TEC TEC MGP_C57BL6NJ_T0007640.1 MGP_C57BL6NJ_G0006258.1 mouse_genomes_project 3 16556506 16677912 - lincRNA lincRNA MGP_C57BL6NJ_T0001415.1 MGP_C57BL6NJ_G0001316.1 mouse_genomes_project 3 113477571 113478257 + TEC TEC MGP_C57BL6NJ_T0018413.1 MGP_C57BL6NJ_G0015895.1 mouse_genomes_project 3 45262952 45372361 - processed_transcript lincRNA MGP_C57BL6NJ_T0018414.1 MGP_C57BL6NJ_G0015895.1 mouse_genomes_project 3 45263865 45357579 - processed_transcript lincRNA MGP_C57BL6NJ_T0018415.1 MGP_C57BL6NJ_G0015895.1 mouse_genomes_project 3 45323422 45372306 - processed_transcript retained_intron MGP_C57BL6NJ_T0064398.1 MGP_C57BL6NJ_G0028327.1 mouse_genomes_project 3 145212770 145311852 + MGP_C57BL6NJ_P0064398 Emcn protein_coding protein_coding MGP_C57BL6NJ_T0064399.1 MGP_C57BL6NJ_G0028327.1 mouse_genomes_project 3 145212793 145294232 + Emcn protein_coding retained_intron MGP_C57BL6NJ_T0064400.1 MGP_C57BL6NJ_G0028327.1 mouse_genomes_project 3 145212846 145310736 + MGP_C57BL6NJ_P0064400 Emcn protein_coding protein_coding MGP_C57BL6NJ_T0064401.1 MGP_C57BL6NJ_G0028327.1 mouse_genomes_project 3 145212877 145304622 + MGP_C57BL6NJ_P0064401 Emcn protein_coding protein_coding MGP_C57BL6NJ_T0011797.1 MGP_C57BL6NJ_G0009882.1 mouse_genomes_project 3 33906861 33907133 + Mir1897 misc_RNA misc_RNA MGP_C57BL6NJ_T0014677.1 MGP_C57BL6NJ_G0012722.1 mouse_genomes_project 3 143249521 143250947 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001255.1 MGP_C57BL6NJ_G0001158.1 mouse_genomes_project 3 28049912 28052002 + TEC TEC MGP_C57BL6NJ_T0007945.1 MGP_C57BL6NJ_G0006497.1 mouse_genomes_project 3 159988805 159993128 + Gm43468 lincRNA lincRNA MGP_C57BL6NJ_T0061223.1 MGP_C57BL6NJ_G0027626.1 mouse_genomes_project 3 54138564 54298022 - MGP_C57BL6NJ_P0061223 Frem2 protein_coding protein_coding MGP_C57BL6NJ_T0061224.1 MGP_C57BL6NJ_G0027626.1 mouse_genomes_project 3 54140478 54171237 - Frem2 protein_coding processed_transcript MGP_C57BL6NJ_T0061225.1 MGP_C57BL6NJ_G0027626.1 mouse_genomes_project 3 54140582 54149446 - Frem2 protein_coding retained_intron MGP_C57BL6NJ_T0061226.1 MGP_C57BL6NJ_G0027626.1 mouse_genomes_project 3 54288369 54292897 - Frem2 protein_coding retained_intron MGP_C57BL6NJ_T0001454.1 MGP_C57BL6NJ_G0001355.1 mouse_genomes_project 3 133748718 133752395 + TEC TEC MGP_C57BL6NJ_T0063701.1 MGP_C57BL6NJ_G0028201.1 mouse_genomes_project 3 114406654 114452073 + MGP_C57BL6NJ_P0063701 Aknad1 protein_coding protein_coding MGP_C57BL6NJ_T0063702.1 MGP_C57BL6NJ_G0028201.1 mouse_genomes_project 3 114411389 114440920 + MGP_C57BL6NJ_P0063702 Aknad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063703.1 MGP_C57BL6NJ_G0028201.1 mouse_genomes_project 3 114418176 114427751 + Aknad1 protein_coding retained_intron MGP_C57BL6NJ_T0063704.1 MGP_C57BL6NJ_G0028201.1 mouse_genomes_project 3 114425868 114440625 + Aknad1 protein_coding retained_intron MGP_C57BL6NJ_T0100259.1 MGP_C57BL6NJ_G0038305.1 mouse_genomes_project 3 61239683 61239790 - Gm24382 snRNA snRNA MGP_C57BL6NJ_T0061239.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55071951 55101877 + MGP_C57BL6NJ_P0061239 Postn protein_coding protein_coding MGP_C57BL6NJ_T0061240.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55071951 55101880 + MGP_C57BL6NJ_P0061240 Postn protein_coding protein_coding MGP_C57BL6NJ_T0061241.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55071967 55101877 + MGP_C57BL6NJ_P0061241 Postn protein_coding protein_coding MGP_C57BL6NJ_T0061242.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55071985 55101295 + MGP_C57BL6NJ_P0061242 Postn protein_coding protein_coding MGP_C57BL6NJ_T0061243.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55088402 55101490 + MGP_C57BL6NJ_P0061243 Postn protein_coding protein_coding MGP_C57BL6NJ_T0061244.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55089326 55095555 + Postn protein_coding retained_intron MGP_C57BL6NJ_T0061245.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55093949 55101330 + Postn protein_coding retained_intron MGP_C57BL6NJ_T0061246.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55093951 55101425 + Postn protein_coding retained_intron MGP_C57BL6NJ_T0061247.1 MGP_C57BL6NJ_G0027630.1 mouse_genomes_project 3 55099731 55101236 + Postn protein_coding retained_intron MGP_C57BL6NJ_T0004394.1 MGP_C57BL6NJ_G0003859.1 mouse_genomes_project 3 54068330 54073600 + Gm16206 antisense antisense MGP_C57BL6NJ_T0014628.1 MGP_C57BL6NJ_G0012673.1 mouse_genomes_project 3 126523174 126523982 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001378.1 MGP_C57BL6NJ_G0001279.1 mouse_genomes_project 3 79062538 79066099 + TEC TEC MGP_C57BL6NJ_T0001505.1 MGP_C57BL6NJ_G0001405.1 mouse_genomes_project 3 151984157 151990159 + TEC TEC MGP_C57BL6NJ_T0064537.1 MGP_C57BL6NJ_G0028358.1 mouse_genomes_project 3 150889756 150908051 + MGP_C57BL6NJ_P0064537 Gbp2 protein_coding protein_coding MGP_C57BL6NJ_T0064538.1 MGP_C57BL6NJ_G0028358.1 mouse_genomes_project 3 150891192 150901143 + MGP_C57BL6NJ_P0064538 Gbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103103.1 MGP_C57BL6NJ_G0040897.1 mouse_genomes_project 3 98420295 98422213 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007767.1 MGP_C57BL6NJ_G0006357.1 mouse_genomes_project 3 86362438 86364831 + Gm38096 lincRNA lincRNA MGP_C57BL6NJ_T0014277.1 MGP_C57BL6NJ_G0012322.1 mouse_genomes_project 3 15834921 15835261 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063940.1 MGP_C57BL6NJ_G0028249.1 mouse_genomes_project 3 128415684 128427291 + MGP_C57BL6NJ_P0063940 F3 protein_coding protein_coding MGP_C57BL6NJ_T0063941.1 MGP_C57BL6NJ_G0028249.1 mouse_genomes_project 3 128415717 128421683 + F3 protein_coding processed_transcript MGP_C57BL6NJ_T0063942.1 MGP_C57BL6NJ_G0028249.1 mouse_genomes_project 3 128421470 128424439 + F3 protein_coding retained_intron MGP_C57BL6NJ_T0063943.1 MGP_C57BL6NJ_G0028249.1 mouse_genomes_project 3 128421694 128427291 + MGP_C57BL6NJ_P0063943 F3 protein_coding protein_coding MGP_C57BL6NJ_T0060496.1 MGP_C57BL6NJ_G0027486.1 mouse_genomes_project 3 7984574 8018025 + MGP_C57BL6NJ_P0060496 Chmp4c protein_coding protein_coding MGP_C57BL6NJ_T0060497.1 MGP_C57BL6NJ_G0027486.1 mouse_genomes_project 3 7984625 8054102 + MGP_C57BL6NJ_P0060497 Chmp4c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001320.1 MGP_C57BL6NJ_G0001223.1 mouse_genomes_project 3 51975456 51978657 + TEC TEC MGP_C57BL6NJ_T0004431.1 MGP_C57BL6NJ_G0003887.1 mouse_genomes_project 3 92910789 92914256 + Gm15998 antisense antisense MGP_C57BL6NJ_T0062965.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268269 100287990 + MGP_C57BL6NJ_P0062965 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062966.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268274 100288060 + MGP_C57BL6NJ_P0062966 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062967.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268316 100287867 + MGP_C57BL6NJ_P0062967 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062968.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268377 100289694 + MGP_C57BL6NJ_P0062968 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062969.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268532 100287972 + MGP_C57BL6NJ_P0062969 Anp32e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062970.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268573 100287743 + MGP_C57BL6NJ_P0062970 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062971.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100268588 100289816 + MGP_C57BL6NJ_P0062971 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062972.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100269527 100279632 + MGP_C57BL6NJ_P0062972 Anp32e protein_coding protein_coding MGP_C57BL6NJ_T0062973.1 MGP_C57BL6NJ_G0028020.1 mouse_genomes_project 3 100286628 100287948 + Anp32e protein_coding retained_intron MGP_C57BL6NJ_T0062639.1 MGP_C57BL6NJ_G0027964.1 mouse_genomes_project 3 98505484 98510738 + MGP_C57BL6NJ_P0062639 Them5 protein_coding protein_coding MGP_C57BL6NJ_T0062640.1 MGP_C57BL6NJ_G0027964.1 mouse_genomes_project 3 98505644 98510736 + MGP_C57BL6NJ_P0062640 Them5 protein_coding protein_coding MGP_C57BL6NJ_T0064846.1 MGP_C57BL6NJ_G0028411.1 mouse_genomes_project 3 162943494 162954589 + MGP_C57BL6NJ_P0064846 Asb17 protein_coding protein_coding MGP_C57BL6NJ_T0064847.1 MGP_C57BL6NJ_G0028411.1 mouse_genomes_project 3 162943551 162953118 + MGP_C57BL6NJ_P0064847 Asb17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060946.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001374 36012040 + MGP_C57BL6NJ_P0060946 Exosc9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060947.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001374 36014496 + MGP_C57BL6NJ_P0060947 Exosc9 protein_coding protein_coding MGP_C57BL6NJ_T0060948.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001382 36005546 + Exosc9 protein_coding retained_intron MGP_C57BL6NJ_T0060949.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001395 36005766 + Exosc9 protein_coding retained_intron MGP_C57BL6NJ_T0060950.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001406 36005720 + MGP_C57BL6NJ_P0060950 Exosc9 protein_coding protein_coding MGP_C57BL6NJ_T0060951.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36001419 36010174 + Exosc9 protein_coding retained_intron MGP_C57BL6NJ_T0060952.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36004321 36012015 + MGP_C57BL6NJ_P0060952 Exosc9 protein_coding protein_coding MGP_C57BL6NJ_T0060953.1 MGP_C57BL6NJ_G0027578.1 mouse_genomes_project 3 36010864 36014414 + MGP_C57BL6NJ_P0060953 Exosc9 protein_coding protein_coding MGP_C57BL6NJ_T0014488.1 MGP_C57BL6NJ_G0012533.1 mouse_genomes_project 3 84266974 84267254 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061036.1 MGP_C57BL6NJ_G0027593.1 mouse_genomes_project 3 37986635 38023551 - MGP_C57BL6NJ_P0061036 protein_coding protein_coding MGP_C57BL6NJ_T0061037.1 MGP_C57BL6NJ_G0027593.1 mouse_genomes_project 3 37987027 38021798 - MGP_C57BL6NJ_P0061037 protein_coding protein_coding MGP_C57BL6NJ_T0061038.1 MGP_C57BL6NJ_G0027593.1 mouse_genomes_project 3 37989455 37992934 - MGP_C57BL6NJ_P0061038 protein_coding protein_coding MGP_C57BL6NJ_T0061039.1 MGP_C57BL6NJ_G0027593.1 mouse_genomes_project 3 38021957 38023522 - protein_coding processed_transcript MGP_C57BL6NJ_T0014295.1 MGP_C57BL6NJ_G0012340.1 mouse_genomes_project 3 20743055 20744563 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063524.1 MGP_C57BL6NJ_G0028156.1 mouse_genomes_project 3 112650610 112658414 + MGP_C57BL6NJ_P0063524 Kcna2 protein_coding protein_coding MGP_C57BL6NJ_T0063525.1 MGP_C57BL6NJ_G0028156.1 mouse_genomes_project 3 112651031 112666701 + MGP_C57BL6NJ_P0063525 Kcna2 protein_coding protein_coding MGP_C57BL6NJ_T0063526.1 MGP_C57BL6NJ_G0028156.1 mouse_genomes_project 3 112652146 112655436 + MGP_C57BL6NJ_P0063526 Kcna2 protein_coding protein_coding MGP_C57BL6NJ_T0001283.1 MGP_C57BL6NJ_G0001186.1 mouse_genomes_project 3 36714440 36714908 + TEC TEC MGP_C57BL6NJ_T0018469.1 MGP_C57BL6NJ_G0015916.1 mouse_genomes_project 3 129576339 129619589 - 4930447N08Rik processed_transcript antisense MGP_C57BL6NJ_T0018470.1 MGP_C57BL6NJ_G0015916.1 mouse_genomes_project 3 129583884 129619688 - 4930447N08Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018471.1 MGP_C57BL6NJ_G0015916.1 mouse_genomes_project 3 129612723 129619534 - 4930447N08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018472.1 MGP_C57BL6NJ_G0015916.1 mouse_genomes_project 3 129612730 129619621 - 4930447N08Rik processed_transcript antisense MGP_C57BL6NJ_T0014245.1 MGP_C57BL6NJ_G0012290.1 mouse_genomes_project 3 6538738 6539060 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100307.1 MGP_C57BL6NJ_G0038353.1 mouse_genomes_project 3 130247260 130247390 - Gm22713 snRNA snRNA MGP_C57BL6NJ_T0007900.1 MGP_C57BL6NJ_G0006462.1 mouse_genomes_project 3 147817685 147823390 - Gm32693 lincRNA lincRNA MGP_C57BL6NJ_T0061272.1 MGP_C57BL6NJ_G0027634.1 mouse_genomes_project 3 55471885 55490780 + MGP_C57BL6NJ_P0061272 Alg5 protein_coding protein_coding MGP_C57BL6NJ_T0061273.1 MGP_C57BL6NJ_G0027634.1 mouse_genomes_project 3 55471905 55492303 + MGP_C57BL6NJ_P0061273 Alg5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061274.1 MGP_C57BL6NJ_G0027634.1 mouse_genomes_project 3 55471913 55486455 + MGP_C57BL6NJ_P0061274 Alg5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061275.1 MGP_C57BL6NJ_G0027634.1 mouse_genomes_project 3 55471919 55476903 + Alg5 protein_coding retained_intron MGP_C57BL6NJ_T0010736.1 MGP_C57BL6NJ_G0008821.1 mouse_genomes_project 3 25677651 25677789 - Gm44464 miRNA miRNA MGP_C57BL6NJ_T0001351.1 MGP_C57BL6NJ_G0001252.1 mouse_genomes_project 3 56926722 56929726 - TEC TEC MGP_C57BL6NJ_T0001480.1 MGP_C57BL6NJ_G0001380.1 mouse_genomes_project 3 136936136 136937807 + TEC TEC MGP_C57BL6NJ_T0103121.1 MGP_C57BL6NJ_G0040915.1 mouse_genomes_project 3 119143650 119165070 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099222.1 MGP_C57BL6NJ_G0037286.1 mouse_genomes_project 3 14170138 14170467 - Gm25863 ribozyme ribozyme MGP_C57BL6NJ_T0063300.1 MGP_C57BL6NJ_G0028105.1 mouse_genomes_project 3 108194194 108225107 + MGP_C57BL6NJ_P0063300 Ampd1 protein_coding protein_coding MGP_C57BL6NJ_T0063301.1 MGP_C57BL6NJ_G0028105.1 mouse_genomes_project 3 108194202 108225101 + MGP_C57BL6NJ_P0063301 Ampd1 protein_coding protein_coding MGP_C57BL6NJ_T0063302.1 MGP_C57BL6NJ_G0028105.1 mouse_genomes_project 3 108194233 108208458 + MGP_C57BL6NJ_P0063302 Ampd1 protein_coding protein_coding MGP_C57BL6NJ_T0063303.1 MGP_C57BL6NJ_G0028105.1 mouse_genomes_project 3 108213899 108214927 + Ampd1 protein_coding retained_intron MGP_C57BL6NJ_T0063304.1 MGP_C57BL6NJ_G0028105.1 mouse_genomes_project 3 108214570 108225093 + MGP_C57BL6NJ_P0063304 Ampd1 protein_coding protein_coding MGP_C57BL6NJ_T0007747.1 MGP_C57BL6NJ_G0006341.1 mouse_genomes_project 3 76361782 76371661 - Gm20356 lincRNA lincRNA MGP_C57BL6NJ_T0101558.1 MGP_C57BL6NJ_G0039604.1 mouse_genomes_project 3 15376208 15376352 - Gm24963 snoRNA snoRNA MGP_C57BL6NJ_T0063185.1 MGP_C57BL6NJ_G0028081.1 mouse_genomes_project 3 105002586 105048533 + MGP_C57BL6NJ_P0063185 Gdap2 protein_coding protein_coding MGP_C57BL6NJ_T0063186.1 MGP_C57BL6NJ_G0028081.1 mouse_genomes_project 3 105002723 105044025 + MGP_C57BL6NJ_P0063186 Gdap2 protein_coding protein_coding MGP_C57BL6NJ_T0063187.1 MGP_C57BL6NJ_G0028081.1 mouse_genomes_project 3 105002749 105011772 + Gdap2 protein_coding processed_transcript MGP_C57BL6NJ_T0063188.1 MGP_C57BL6NJ_G0028081.1 mouse_genomes_project 3 105036134 105048207 + MGP_C57BL6NJ_P0063188 Gdap2 protein_coding protein_coding MGP_C57BL6NJ_T0063189.1 MGP_C57BL6NJ_G0028081.1 mouse_genomes_project 3 105042241 105044025 + Gdap2 protein_coding retained_intron MGP_C57BL6NJ_T0014364.1 MGP_C57BL6NJ_G0012409.1 mouse_genomes_project 3 47636878 47637588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011802.1 MGP_C57BL6NJ_G0009887.1 mouse_genomes_project 3 75505307 75505606 - Gm22538 misc_RNA misc_RNA MGP_C57BL6NJ_T0014261.1 MGP_C57BL6NJ_G0012306.1 mouse_genomes_project 3 11610718 11611277 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004522.1 MGP_C57BL6NJ_G0003943.1 mouse_genomes_project 3 134746439 134747773 - Gm43729 antisense antisense MGP_C57BL6NJ_T0001517.1 MGP_C57BL6NJ_G0001417.1 mouse_genomes_project 3 161389491 161393145 + TEC TEC MGP_C57BL6NJ_T0018486.1 MGP_C57BL6NJ_G0015923.1 mouse_genomes_project 3 163508289 163511719 + AI606473 processed_transcript lincRNA MGP_C57BL6NJ_T0018487.1 MGP_C57BL6NJ_G0015923.1 mouse_genomes_project 3 163509461 163510263 + AI606473 processed_transcript retained_intron MGP_C57BL6NJ_T0001383.1 MGP_C57BL6NJ_G0001284.1 mouse_genomes_project 3 82913465 82915790 + TEC TEC MGP_C57BL6NJ_T0100278.1 MGP_C57BL6NJ_G0038324.1 mouse_genomes_project 3 92500834 92500941 - Gm26465 snRNA snRNA MGP_C57BL6NJ_T0060459.1 MGP_C57BL6NJ_G0027473.1 mouse_genomes_project 3 6773230 6807850 + MGP_C57BL6NJ_P0060459 Zbtb10 protein_coding protein_coding MGP_C57BL6NJ_T0100249.1 MGP_C57BL6NJ_G0038295.1 mouse_genomes_project 3 49284630 49284794 + Gm23511 snRNA snRNA MGP_C57BL6NJ_T0014707.1 MGP_C57BL6NJ_G0012752.1 mouse_genomes_project 3 153129038 153129563 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063760.1 MGP_C57BL6NJ_G0028212.1 mouse_genomes_project 3 116007248 116012138 - MGP_C57BL6NJ_P0063760 Prmt6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063761.1 MGP_C57BL6NJ_G0028212.1 mouse_genomes_project 3 116007251 116012133 - MGP_C57BL6NJ_P0063761 Prmt6 protein_coding protein_coding MGP_C57BL6NJ_T0063762.1 MGP_C57BL6NJ_G0028212.1 mouse_genomes_project 3 116009688 116012138 - MGP_C57BL6NJ_P0063762 Prmt6 protein_coding protein_coding MGP_C57BL6NJ_T0061625.1 MGP_C57BL6NJ_G0027718.1 mouse_genomes_project 3 71897613 71918505 + MGP_C57BL6NJ_P0061625 Otol1 protein_coding protein_coding MGP_C57BL6NJ_T0061483.1 MGP_C57BL6NJ_G0027683.1 mouse_genomes_project 3 65282408 65315050 - MGP_C57BL6NJ_P0061483 Slc33a1 protein_coding protein_coding MGP_C57BL6NJ_T0061484.1 MGP_C57BL6NJ_G0027683.1 mouse_genomes_project 3 65288314 65315152 - MGP_C57BL6NJ_P0061484 Slc33a1 protein_coding protein_coding MGP_C57BL6NJ_T0061485.1 MGP_C57BL6NJ_G0027683.1 mouse_genomes_project 3 65288398 65314756 - MGP_C57BL6NJ_P0061485 Slc33a1 protein_coding protein_coding MGP_C57BL6NJ_T0062242.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92800217 92813045 + MGP_C57BL6NJ_P0062242 Thbs3 protein_coding protein_coding MGP_C57BL6NJ_T0062243.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92800242 92803088 + MGP_C57BL6NJ_P0062243 Thbs3 protein_coding protein_coding MGP_C57BL6NJ_T0062244.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92800264 92813045 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062245.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92800270 92813012 + MGP_C57BL6NJ_P0062245 Thbs3 protein_coding protein_coding MGP_C57BL6NJ_T0062246.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92802422 92804090 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062247.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92807359 92809384 + Thbs3 protein_coding processed_transcript MGP_C57BL6NJ_T0062249.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92810347 92811765 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062250.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92810496 92812911 + MGP_C57BL6NJ_P0062250 Thbs3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062251.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92810537 92811633 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062252.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92811384 92812771 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062253.1 MGP_C57BL6NJ_G0027842.1 mouse_genomes_project 3 92812457 92812994 + Thbs3 protein_coding retained_intron MGP_C57BL6NJ_T0062030.1 MGP_C57BL6NJ_G0027811.1 mouse_genomes_project 3 91778689 91785823 + MGP_C57BL6NJ_P0062030 Paqr6 protein_coding protein_coding MGP_C57BL6NJ_T0062031.1 MGP_C57BL6NJ_G0027811.1 mouse_genomes_project 3 91778694 91786208 + MGP_C57BL6NJ_P0062031 Paqr6 protein_coding protein_coding MGP_C57BL6NJ_T0062032.1 MGP_C57BL6NJ_G0027811.1 mouse_genomes_project 3 91778696 91785072 + Paqr6 protein_coding processed_transcript MGP_C57BL6NJ_T0062033.1 MGP_C57BL6NJ_G0027811.1 mouse_genomes_project 3 91778698 91779908 + Paqr6 protein_coding retained_intron MGP_C57BL6NJ_T0062034.1 MGP_C57BL6NJ_G0027811.1 mouse_genomes_project 3 91784550 91786208 + Paqr6 protein_coding retained_intron MGP_C57BL6NJ_T0014505.1 MGP_C57BL6NJ_G0012550.1 mouse_genomes_project 3 91687897 91688044 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063333.1 MGP_C57BL6NJ_G0028111.1 mouse_genomes_project 3 108905563 108917361 - Olfml3 protein_coding processed_transcript MGP_C57BL6NJ_T0063334.1 MGP_C57BL6NJ_G0028111.1 mouse_genomes_project 3 108914996 108921133 - MGP_C57BL6NJ_P0063334 Olfml3 protein_coding protein_coding MGP_C57BL6NJ_T0063335.1 MGP_C57BL6NJ_G0028111.1 mouse_genomes_project 3 108915011 108915885 - MGP_C57BL6NJ_P0063335 Olfml3 protein_coding protein_coding MGP_C57BL6NJ_T0063336.1 MGP_C57BL6NJ_G0028111.1 mouse_genomes_project 3 108916862 108921100 - Olfml3 protein_coding retained_intron MGP_C57BL6NJ_T0061233.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54844720 54872559 + Trpc4 protein_coding processed_transcript MGP_C57BL6NJ_T0061234.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54844742 55027632 + MGP_C57BL6NJ_P0061234 Trpc4 protein_coding protein_coding MGP_C57BL6NJ_T0061235.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54844751 54969569 + Trpc4 protein_coding retained_intron MGP_C57BL6NJ_T0061236.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54844789 55027628 + MGP_C57BL6NJ_P0061236 Trpc4 protein_coding protein_coding MGP_C57BL6NJ_T0061237.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54845058 54925976 + Trpc4 protein_coding retained_intron MGP_C57BL6NJ_T0061238.1 MGP_C57BL6NJ_G0027629.1 mouse_genomes_project 3 54845300 55027577 + MGP_C57BL6NJ_P0061238 Trpc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063166.1 MGP_C57BL6NJ_G0028076.1 mouse_genomes_project 3 103635437 103654425 - MGP_C57BL6NJ_P0063166 Hao2 protein_coding protein_coding MGP_C57BL6NJ_T0007793.1 MGP_C57BL6NJ_G0006371.1 mouse_genomes_project 3 96857668 96858055 - Gm38201 lincRNA lincRNA MGP_C57BL6NJ_T0014436.1 MGP_C57BL6NJ_G0012481.1 mouse_genomes_project 3 68493204 68493993 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001324.1 MGP_C57BL6NJ_G0001227.1 mouse_genomes_project 3 52199264 52200625 + TEC TEC MGP_C57BL6NJ_T0001325.1 MGP_C57BL6NJ_G0001227.1 mouse_genomes_project 3 52199319 52200625 + TEC TEC MGP_C57BL6NJ_T0101627.1 MGP_C57BL6NJ_G0039673.1 mouse_genomes_project 3 163020340 163020411 - Snord45b snoRNA snoRNA MGP_C57BL6NJ_T0061228.1 MGP_C57BL6NJ_G0027628.1 mouse_genomes_project 3 54523377 54529245 - Ufm1 protein_coding retained_intron MGP_C57BL6NJ_T0061229.1 MGP_C57BL6NJ_G0027628.1 mouse_genomes_project 3 54523424 54529830 - MGP_C57BL6NJ_P0061229 Ufm1 protein_coding protein_coding MGP_C57BL6NJ_T0061230.1 MGP_C57BL6NJ_G0027628.1 mouse_genomes_project 3 54523498 54529318 - MGP_C57BL6NJ_P0061230 Ufm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061231.1 MGP_C57BL6NJ_G0027628.1 mouse_genomes_project 3 54524366 54529322 - MGP_C57BL6NJ_P0061231 Ufm1 protein_coding protein_coding MGP_C57BL6NJ_T0061232.1 MGP_C57BL6NJ_G0027628.1 mouse_genomes_project 3 54525171 54529318 - Ufm1 protein_coding retained_intron MGP_C57BL6NJ_T0060802.1 MGP_C57BL6NJ_G0027554.1 mouse_genomes_project 3 31536159 31567533 + MGP_C57BL6NJ_P0060802 Pik3ca protein_coding protein_coding MGP_C57BL6NJ_T0060803.1 MGP_C57BL6NJ_G0027554.1 mouse_genomes_project 3 31566378 31567530 + Pik3ca protein_coding retained_intron MGP_C57BL6NJ_T0063926.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128098831 128132734 + MGP_C57BL6NJ_P0063926 Cnn3 protein_coding protein_coding MGP_C57BL6NJ_T0063927.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128098879 128132726 + Cnn3 protein_coding retained_intron MGP_C57BL6NJ_T0063928.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128099104 128132338 + MGP_C57BL6NJ_P0063928 Cnn3 protein_coding protein_coding MGP_C57BL6NJ_T0063929.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128099106 128131212 + MGP_C57BL6NJ_P0063929 Cnn3 protein_coding protein_coding MGP_C57BL6NJ_T0063930.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128099616 128124328 + Cnn3 protein_coding processed_transcript MGP_C57BL6NJ_T0063931.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128125163 128131881 + Cnn3 protein_coding retained_intron MGP_C57BL6NJ_T0063932.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128130869 128132474 + MGP_C57BL6NJ_P0063932 Cnn3 protein_coding protein_coding MGP_C57BL6NJ_T0063933.1 MGP_C57BL6NJ_G0028246.1 mouse_genomes_project 3 128130898 128132476 + MGP_C57BL6NJ_P0063933 Cnn3 protein_coding protein_coding MGP_C57BL6NJ_T0064478.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146702009 146882690 + MGP_C57BL6NJ_P0064478 Tspan5 protein_coding protein_coding MGP_C57BL6NJ_T0064479.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146702119 146879211 + MGP_C57BL6NJ_P0064479 Tspan5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064480.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146702319 146870182 + MGP_C57BL6NJ_P0064480 Tspan5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064481.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146702583 146867805 + MGP_C57BL6NJ_P0064481 Tspan5 protein_coding protein_coding MGP_C57BL6NJ_T0064482.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146741248 146877279 + MGP_C57BL6NJ_P0064482 Tspan5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064483.1 MGP_C57BL6NJ_G0028347.1 mouse_genomes_project 3 146808582 146879218 + MGP_C57BL6NJ_P0064483 Tspan5 protein_coding protein_coding MGP_C57BL6NJ_T0101618.1 MGP_C57BL6NJ_G0039664.1 mouse_genomes_project 3 140335256 140335367 - Gm22322 snoRNA snoRNA MGP_C57BL6NJ_T0061741.1 MGP_C57BL6NJ_G0027745.1 mouse_genomes_project 3 84999539 85051995 - MGP_C57BL6NJ_P0061741 Gucy1a3 protein_coding protein_coding MGP_C57BL6NJ_T0061742.1 MGP_C57BL6NJ_G0027745.1 mouse_genomes_project 3 84999549 85052709 - MGP_C57BL6NJ_P0061742 Gucy1a3 protein_coding protein_coding MGP_C57BL6NJ_T0061743.1 MGP_C57BL6NJ_G0027745.1 mouse_genomes_project 3 85001664 85009120 - MGP_C57BL6NJ_P0061743 Gucy1a3 protein_coding protein_coding MGP_C57BL6NJ_T0061744.1 MGP_C57BL6NJ_G0027745.1 mouse_genomes_project 3 85013851 85052711 - Gucy1a3 protein_coding retained_intron MGP_C57BL6NJ_T0061745.1 MGP_C57BL6NJ_G0027745.1 mouse_genomes_project 3 85026222 85052527 - Gucy1a3 protein_coding processed_transcript MGP_C57BL6NJ_T0004532.1 MGP_C57BL6NJ_G0003952.1 mouse_genomes_project 3 141542545 141842724 - antisense antisense MGP_C57BL6NJ_T0004533.1 MGP_C57BL6NJ_G0003952.1 mouse_genomes_project 3 141748189 141842871 - antisense antisense MGP_C57BL6NJ_T0014223.1 MGP_C57BL6NJ_G0012268.1 mouse_genomes_project 3 1565729 1566159 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064827.1 MGP_C57BL6NJ_G0028407.1 mouse_genomes_project 3 161477177 161695823 - MGP_C57BL6NJ_P0064827 Ak5 protein_coding protein_coding MGP_C57BL6NJ_T0064828.1 MGP_C57BL6NJ_G0028407.1 mouse_genomes_project 3 161478225 161544726 - MGP_C57BL6NJ_P0064828 Ak5 protein_coding protein_coding MGP_C57BL6NJ_T0064829.1 MGP_C57BL6NJ_G0028407.1 mouse_genomes_project 3 161487086 161494426 - Ak5 protein_coding retained_intron MGP_C57BL6NJ_T0099407.1 MGP_C57BL6NJ_G0037464.1 mouse_genomes_project 3 108948690 108950112 - Gm43149 sense_intronic sense_intronic MGP_C57BL6NJ_T0007890.1 MGP_C57BL6NJ_G0006452.1 mouse_genomes_project 3 142086333 142275930 - lincRNA lincRNA MGP_C57BL6NJ_T0001483.1 MGP_C57BL6NJ_G0001383.1 mouse_genomes_project 3 138065557 138068386 + TEC TEC MGP_C57BL6NJ_T0004473.1 MGP_C57BL6NJ_G0003915.1 mouse_genomes_project 3 108954947 108957356 + Gm15886 antisense antisense MGP_C57BL6NJ_T0004474.1 MGP_C57BL6NJ_G0003915.1 mouse_genomes_project 3 108954968 108972391 + Gm15886 antisense antisense MGP_C57BL6NJ_T0004475.1 MGP_C57BL6NJ_G0003915.1 mouse_genomes_project 3 108955303 108960992 + Gm15886 antisense antisense MGP_C57BL6NJ_T0004476.1 MGP_C57BL6NJ_G0003915.1 mouse_genomes_project 3 108960410 108961403 + Gm15886 antisense antisense MGP_C57BL6NJ_T0004499.1 MGP_C57BL6NJ_G0003924.1 mouse_genomes_project 3 113890233 113898310 - 1700010K24Rik antisense antisense MGP_C57BL6NJ_T0061795.1 MGP_C57BL6NJ_G0027760.1 mouse_genomes_project 3 87210904 87211933 + MGP_C57BL6NJ_P0061795 Gm6525 protein_coding protein_coding MGP_C57BL6NJ_T0018425.1 MGP_C57BL6NJ_G0015900.1 mouse_genomes_project 3 85573702 85576583 - Gm29999 processed_transcript retained_intron MGP_C57BL6NJ_T0018426.1 MGP_C57BL6NJ_G0015900.1 mouse_genomes_project 3 85573848 85579322 - Gm29999 processed_transcript lincRNA MGP_C57BL6NJ_T0007800.1 MGP_C57BL6NJ_G0006378.1 mouse_genomes_project 3 100735749 100738650 - lincRNA lincRNA MGP_C57BL6NJ_T0001284.1 MGP_C57BL6NJ_G0001187.1 mouse_genomes_project 3 36824315 36826819 + TEC TEC MGP_C57BL6NJ_T0061221.1 MGP_C57BL6NJ_G0027625.1 mouse_genomes_project 3 54105482 54119926 + Stoml3 protein_coding retained_intron MGP_C57BL6NJ_T0061222.1 MGP_C57BL6NJ_G0027625.1 mouse_genomes_project 3 54105556 54131644 + MGP_C57BL6NJ_P0061222 Stoml3 protein_coding protein_coding MGP_C57BL6NJ_T0062443.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894084 93894864 - MGP_C57BL6NJ_P0062443 Rps27rt protein_coding protein_coding MGP_C57BL6NJ_T0062444.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894225 93895178 - MGP_C57BL6NJ_P0062444 Rps27rt protein_coding protein_coding MGP_C57BL6NJ_T0062445.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894229 93895196 - Rps27rt protein_coding retained_intron MGP_C57BL6NJ_T0062446.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894229 93895197 - Rps27rt protein_coding retained_intron MGP_C57BL6NJ_T0062447.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894233 93895186 - Rps27rt protein_coding retained_intron MGP_C57BL6NJ_T0062448.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894233 93895211 - MGP_C57BL6NJ_P0062448 Rps27rt protein_coding protein_coding MGP_C57BL6NJ_T0062449.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894389 93895209 - Rps27rt protein_coding retained_intron MGP_C57BL6NJ_T0062450.1 MGP_C57BL6NJ_G0027874.1 mouse_genomes_project 3 93894621 93895208 - Rps27rt protein_coding retained_intron MGP_C57BL6NJ_T0063429.1 MGP_C57BL6NJ_G0028130.1 mouse_genomes_project 3 110245774 110263131 - MGP_C57BL6NJ_P0063429 Wnt2b protein_coding protein_coding MGP_C57BL6NJ_T0063430.1 MGP_C57BL6NJ_G0028130.1 mouse_genomes_project 3 110261623 110262931 - Wnt2b protein_coding retained_intron MGP_C57BL6NJ_T0014475.1 MGP_C57BL6NJ_G0012520.1 mouse_genomes_project 3 79437343 79438173 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014528.1 MGP_C57BL6NJ_G0012573.1 mouse_genomes_project 3 97566826 97568549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001438.1 MGP_C57BL6NJ_G0001339.1 mouse_genomes_project 3 128445834 128449437 - TEC TEC MGP_C57BL6NJ_T0014381.1 MGP_C57BL6NJ_G0012426.1 mouse_genomes_project 3 52775575 52776383 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014372.1 MGP_C57BL6NJ_G0012417.1 mouse_genomes_project 3 50192847 50193310 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001352.1 MGP_C57BL6NJ_G0001253.1 mouse_genomes_project 3 56932162 56935715 - TEC TEC MGP_C57BL6NJ_T0001356.1 MGP_C57BL6NJ_G0001257.1 mouse_genomes_project 3 58592256 58593553 - TEC TEC MGP_C57BL6NJ_T0060998.1 MGP_C57BL6NJ_G0027584.1 mouse_genomes_project 3 36596468 36603033 - MGP_C57BL6NJ_P0060998 Il2 protein_coding protein_coding MGP_C57BL6NJ_T0014305.1 MGP_C57BL6NJ_G0012350.1 mouse_genomes_project 3 27005824 27006068 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063011.1 MGP_C57BL6NJ_G0028034.1 mouse_genomes_project 3 100653574 100664590 - MGP_C57BL6NJ_P0063011 Fcgr1 protein_coding protein_coding MGP_C57BL6NJ_T0063012.1 MGP_C57BL6NJ_G0028034.1 mouse_genomes_project 3 100656532 100664554 - MGP_C57BL6NJ_P0063012 Fcgr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103120.1 MGP_C57BL6NJ_G0040914.1 mouse_genomes_project 3 119108944 119118726 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001419.1 MGP_C57BL6NJ_G0001320.1 mouse_genomes_project 3 114219383 114220822 + TEC TEC MGP_C57BL6NJ_T0060431.1 MGP_C57BL6NJ_G0027465.1 mouse_genomes_project 3 3935890 3945395 - MGP_C57BL6NJ_P0060431 1700008P02Rik protein_coding protein_coding MGP_C57BL6NJ_T0099379.1 MGP_C57BL6NJ_G0037437.1 mouse_genomes_project 3 24243775 24249771 - Gm37573 sense_intronic sense_intronic MGP_C57BL6NJ_T0099088.1 MGP_C57BL6NJ_G0037152.1 mouse_genomes_project 3 7401719 7401828 - Gm24786 rRNA rRNA MGP_C57BL6NJ_T0007772.1 MGP_C57BL6NJ_G0006362.1 mouse_genomes_project 3 89362480 89365269 + Gm37933 lincRNA lincRNA MGP_C57BL6NJ_T0007713.1 MGP_C57BL6NJ_G0006314.1 mouse_genomes_project 3 52706335 52714059 - Gm30074 lincRNA lincRNA MGP_C57BL6NJ_T0060843.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31868507 31880250 + MGP_C57BL6NJ_P0060843 Ndufb5 protein_coding protein_coding MGP_C57BL6NJ_T0060844.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31868512 31871637 + Ndufb5 protein_coding retained_intron MGP_C57BL6NJ_T0060845.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31868518 31882915 + MGP_C57BL6NJ_P0060845 Ndufb5 protein_coding protein_coding MGP_C57BL6NJ_T0060846.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31868542 31882596 + MGP_C57BL6NJ_P0060846 Ndufb5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060847.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31868543 31879821 + MGP_C57BL6NJ_P0060847 Ndufb5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060848.1 MGP_C57BL6NJ_G0027561.1 mouse_genomes_project 3 31873029 31882452 + MGP_C57BL6NJ_P0060848 Ndufb5 protein_coding protein_coding MGP_C57BL6NJ_T0062753.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281515 99291374 - MGP_C57BL6NJ_P0062753 Psmd4 protein_coding protein_coding MGP_C57BL6NJ_T0062754.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281518 99291312 - MGP_C57BL6NJ_P0062754 Psmd4 protein_coding protein_coding MGP_C57BL6NJ_T0062755.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281525 99284089 - MGP_C57BL6NJ_P0062755 Psmd4 protein_coding protein_coding MGP_C57BL6NJ_T0062756.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281526 99291308 - Psmd4 protein_coding retained_intron MGP_C57BL6NJ_T0062757.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281526 99291303 - MGP_C57BL6NJ_P0062757 Psmd4 protein_coding protein_coding MGP_C57BL6NJ_T0062758.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281744 99291305 - Psmd4 protein_coding retained_intron MGP_C57BL6NJ_T0062759.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99281749 99282738 - Psmd4 protein_coding retained_intron MGP_C57BL6NJ_T0062760.1 MGP_C57BL6NJ_G0027984.1 mouse_genomes_project 3 99284644 99291310 - Psmd4 protein_coding processed_transcript MGP_C57BL6NJ_T0061366.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59476982 59511810 + MGP_C57BL6NJ_P0061366 Eif2a protein_coding protein_coding MGP_C57BL6NJ_T0061367.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59477203 59500324 + Eif2a protein_coding retained_intron MGP_C57BL6NJ_T0061368.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59477204 59509953 + MGP_C57BL6NJ_P0061368 Eif2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061369.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59477217 59511810 + MGP_C57BL6NJ_P0061369 Eif2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061370.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59477464 59500112 + MGP_C57BL6NJ_P0061370 Eif2a protein_coding protein_coding MGP_C57BL6NJ_T0061371.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59496672 59500324 + Eif2a protein_coding retained_intron MGP_C57BL6NJ_T0061372.1 MGP_C57BL6NJ_G0027655.1 mouse_genomes_project 3 59498733 59505064 + Eif2a protein_coding retained_intron MGP_C57BL6NJ_T0063175.1 MGP_C57BL6NJ_G0028079.1 mouse_genomes_project 3 104688910 104762914 + Spag17 protein_coding processed_transcript MGP_C57BL6NJ_T0063176.1 MGP_C57BL6NJ_G0028079.1 mouse_genomes_project 3 104688921 104980664 + MGP_C57BL6NJ_P0063176 Spag17 protein_coding protein_coding MGP_C57BL6NJ_T0063177.1 MGP_C57BL6NJ_G0028079.1 mouse_genomes_project 3 104830259 104835286 + Spag17 protein_coding retained_intron MGP_C57BL6NJ_T0063178.1 MGP_C57BL6NJ_G0028079.1 mouse_genomes_project 3 104835229 104847592 + Spag17 protein_coding retained_intron MGP_C57BL6NJ_T0061636.1 MGP_C57BL6NJ_G0027722.1 mouse_genomes_project 3 77465467 77575305 - MGP_C57BL6NJ_P0061636 Zbbx protein_coding protein_coding MGP_C57BL6NJ_T0061637.1 MGP_C57BL6NJ_G0027722.1 mouse_genomes_project 3 77465478 77575263 - MGP_C57BL6NJ_P0061637 Zbbx protein_coding protein_coding MGP_C57BL6NJ_T0061638.1 MGP_C57BL6NJ_G0027722.1 mouse_genomes_project 3 77489053 77575236 - MGP_C57BL6NJ_P0061638 Zbbx protein_coding protein_coding MGP_C57BL6NJ_T0061639.1 MGP_C57BL6NJ_G0027722.1 mouse_genomes_project 3 77506685 77575305 - MGP_C57BL6NJ_P0061639 Zbbx protein_coding protein_coding MGP_C57BL6NJ_T0061640.1 MGP_C57BL6NJ_G0027722.1 mouse_genomes_project 3 77541573 77599573 - MGP_C57BL6NJ_P0061640 Zbbx protein_coding protein_coding MGP_C57BL6NJ_T0010784.1 MGP_C57BL6NJ_G0008869.1 mouse_genomes_project 3 124844521 124844631 + Gm24155 miRNA miRNA MGP_C57BL6NJ_T0010765.1 MGP_C57BL6NJ_G0008850.1 mouse_genomes_project 3 93658779 93658837 - Mir7669 miRNA miRNA MGP_C57BL6NJ_T0018452.1 MGP_C57BL6NJ_G0015911.1 mouse_genomes_project 3 114031029 114037176 - Gm12522 processed_transcript processed_transcript MGP_C57BL6NJ_T0103094.1 MGP_C57BL6NJ_G0040888.1 mouse_genomes_project 3 97904945 97906058 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100284.1 MGP_C57BL6NJ_G0038330.1 mouse_genomes_project 3 94295715 94295862 - Gm23464 snRNA snRNA MGP_C57BL6NJ_T0014717.1 MGP_C57BL6NJ_G0012762.1 mouse_genomes_project 3 157965849 157966308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063123.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102319011 102534365 - MGP_C57BL6NJ_P0063123 Pde4dip protein_coding protein_coding MGP_C57BL6NJ_T0063124.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102319017 102324211 - Pde4dip protein_coding processed_transcript MGP_C57BL6NJ_T0063125.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102319052 102534365 - MGP_C57BL6NJ_P0063125 Pde4dip protein_coding protein_coding MGP_C57BL6NJ_T0063126.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102324168 102326455 - Pde4dip protein_coding processed_transcript MGP_C57BL6NJ_T0063127.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102370997 102400136 - MGP_C57BL6NJ_P0063127 Pde4dip protein_coding protein_coding MGP_C57BL6NJ_T0063128.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102372960 102400058 - MGP_C57BL6NJ_P0063128 Pde4dip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063129.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102378843 102511476 - MGP_C57BL6NJ_P0063129 Pde4dip protein_coding protein_coding MGP_C57BL6NJ_T0063130.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102433784 102465483 - MGP_C57BL6NJ_P0063130 Pde4dip protein_coding protein_coding MGP_C57BL6NJ_T0063131.1 MGP_C57BL6NJ_G0028063.1 mouse_genomes_project 3 102461822 102511425 - Pde4dip protein_coding retained_intron MGP_C57BL6NJ_T0062346.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93334985 93336653 + Adar protein_coding retained_intron MGP_C57BL6NJ_T0062347.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93335295 93355129 + Adar protein_coding processed_transcript MGP_C57BL6NJ_T0062348.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93350850 93371286 + MGP_C57BL6NJ_P0062348 Adar protein_coding protein_coding MGP_C57BL6NJ_T0062349.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93350850 93371286 + MGP_C57BL6NJ_P0062349 Adar protein_coding protein_coding MGP_C57BL6NJ_T0062350.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93350850 93371286 + MGP_C57BL6NJ_P0062350 Adar protein_coding protein_coding MGP_C57BL6NJ_T0062351.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93350913 93371055 + MGP_C57BL6NJ_P0062351 Adar protein_coding protein_coding MGP_C57BL6NJ_T0062352.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93357561 93359265 + Adar protein_coding retained_intron MGP_C57BL6NJ_T0062353.1 MGP_C57BL6NJ_G0027863.1 mouse_genomes_project 3 93365505 93367072 + Adar protein_coding retained_intron MGP_C57BL6NJ_T0001457.1 MGP_C57BL6NJ_G0001358.1 mouse_genomes_project 3 133848908 133852491 + TEC TEC MGP_C57BL6NJ_T0063553.1 MGP_C57BL6NJ_G0028167.1 mouse_genomes_project 3 113181278 113193868 + MGP_C57BL6NJ_P0063553 Alx3 protein_coding protein_coding MGP_C57BL6NJ_T0001414.1 MGP_C57BL6NJ_G0001315.1 mouse_genomes_project 3 112228286 112232964 + TEC TEC MGP_C57BL6NJ_T0007963.1 MGP_C57BL6NJ_G0006508.1 mouse_genomes_project 3 168593531 168811150 + Gm20752 lincRNA lincRNA MGP_C57BL6NJ_T0014547.1 MGP_C57BL6NJ_G0012592.1 mouse_genomes_project 3 102849319 102850456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060919.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35351718 35393433 - MGP_C57BL6NJ_P0060919 Mccc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060920.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35352239 35393502 - MGP_C57BL6NJ_P0060920 Mccc1 protein_coding protein_coding MGP_C57BL6NJ_T0060921.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35352245 35353516 - Mccc1 protein_coding retained_intron MGP_C57BL6NJ_T0060922.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35354133 35361518 - Mccc1 protein_coding retained_intron MGP_C57BL6NJ_T0060923.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35365786 35388719 - Mccc1 protein_coding retained_intron MGP_C57BL6NJ_T0060924.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35367599 35369009 - Mccc1 protein_coding retained_intron MGP_C57BL6NJ_T0060925.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35368217 35382821 - MGP_C57BL6NJ_P0060925 Mccc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060926.1 MGP_C57BL6NJ_G0027571.1 mouse_genomes_project 3 35377874 35393465 - MGP_C57BL6NJ_P0060926 Mccc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014509.1 MGP_C57BL6NJ_G0012554.1 mouse_genomes_project 3 93446502 93447028 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100292.1 MGP_C57BL6NJ_G0038338.1 mouse_genomes_project 3 100856684 100856850 - Rnu1b6 snRNA snRNA MGP_C57BL6NJ_T0014240.1 MGP_C57BL6NJ_G0012285.1 mouse_genomes_project 3 5605701 5607553 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014588.1 MGP_C57BL6NJ_G0012633.1 mouse_genomes_project 3 113610609 113611012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014378.1 MGP_C57BL6NJ_G0012423.1 mouse_genomes_project 3 51880351 51880670 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004497.1 MGP_C57BL6NJ_G0003923.1 mouse_genomes_project 3 113711687 113714115 + Gm12500 antisense antisense MGP_C57BL6NJ_T0004498.1 MGP_C57BL6NJ_G0003923.1 mouse_genomes_project 3 113712079 113714113 + Gm12500 antisense antisense MGP_C57BL6NJ_T0063042.1 MGP_C57BL6NJ_G0028045.1 mouse_genomes_project 3 101092097 101112105 + MGP_C57BL6NJ_P0063042 Itga10 protein_coding protein_coding MGP_C57BL6NJ_T0063043.1 MGP_C57BL6NJ_G0028045.1 mouse_genomes_project 3 101092097 101112099 + MGP_C57BL6NJ_P0063043 Itga10 protein_coding protein_coding MGP_C57BL6NJ_T0063044.1 MGP_C57BL6NJ_G0028045.1 mouse_genomes_project 3 101103894 101109616 + Itga10 protein_coding retained_intron MGP_C57BL6NJ_T0014690.1 MGP_C57BL6NJ_G0012735.1 mouse_genomes_project 3 146551928 146552595 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014571.1 MGP_C57BL6NJ_G0012616.1 mouse_genomes_project 3 107978227 107978516 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014283.1 MGP_C57BL6NJ_G0012328.1 mouse_genomes_project 3 17874383 17875131 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007622.1 MGP_C57BL6NJ_G0006249.1 mouse_genomes_project 3 7612137 7615365 - Gm38335 lincRNA lincRNA MGP_C57BL6NJ_T0014285.1 MGP_C57BL6NJ_G0012330.1 mouse_genomes_project 3 18062077 18062460 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063559.1 MGP_C57BL6NJ_G0028169.1 mouse_genomes_project 3 113221663 113224510 + MGP_C57BL6NJ_P0063559 Gm10961 protein_coding protein_coding MGP_C57BL6NJ_T0064405.1 MGP_C57BL6NJ_G0028330.1 mouse_genomes_project 3 145753803 145757756 + MGP_C57BL6NJ_P0064405 H2afz protein_coding protein_coding MGP_C57BL6NJ_T0064406.1 MGP_C57BL6NJ_G0028330.1 mouse_genomes_project 3 145753821 145756335 + H2afz protein_coding processed_transcript MGP_C57BL6NJ_T0064407.1 MGP_C57BL6NJ_G0028330.1 mouse_genomes_project 3 145753924 145756699 + MGP_C57BL6NJ_P0064407 H2afz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064408.1 MGP_C57BL6NJ_G0028330.1 mouse_genomes_project 3 145753924 145756699 + MGP_C57BL6NJ_P0064408 H2afz protein_coding protein_coding MGP_C57BL6NJ_T0064409.1 MGP_C57BL6NJ_G0028330.1 mouse_genomes_project 3 145755379 145756638 + H2afz protein_coding retained_intron MGP_C57BL6NJ_T0103113.1 MGP_C57BL6NJ_G0040907.1 mouse_genomes_project 3 111619951 111621295 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001443.1 MGP_C57BL6NJ_G0001344.1 mouse_genomes_project 3 129827854 129832413 + TEC TEC MGP_C57BL6NJ_T0062039.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91848890 91865071 - MGP_C57BL6NJ_P0062039 Pmf1 protein_coding protein_coding MGP_C57BL6NJ_T0062040.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91848890 91865066 - MGP_C57BL6NJ_P0062040 Pmf1 protein_coding protein_coding MGP_C57BL6NJ_T0062041.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91849126 91865005 - Pmf1 protein_coding processed_transcript MGP_C57BL6NJ_T0062042.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91850490 91851468 - Pmf1 protein_coding retained_intron MGP_C57BL6NJ_T0062043.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91850815 91865026 - MGP_C57BL6NJ_P0062043 Pmf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062044.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91852112 91854458 - Pmf1 protein_coding retained_intron MGP_C57BL6NJ_T0062045.1 MGP_C57BL6NJ_G0027814.1 mouse_genomes_project 3 91854280 91865048 - Pmf1 protein_coding retained_intron MGP_C57BL6NJ_T0063541.1 MGP_C57BL6NJ_G0028164.1 mouse_genomes_project 3 113019231 113040593 - MGP_C57BL6NJ_P0063541 Kcnc4 protein_coding protein_coding MGP_C57BL6NJ_T0063179.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104975521 105002613 - MGP_C57BL6NJ_P0063179 Wdr3 protein_coding protein_coding MGP_C57BL6NJ_T0063180.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104976076 104978963 - Wdr3 protein_coding retained_intron MGP_C57BL6NJ_T0063181.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104979840 105002613 - Wdr3 protein_coding retained_intron MGP_C57BL6NJ_T0063182.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104979842 104980924 - Wdr3 protein_coding retained_intron MGP_C57BL6NJ_T0063183.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104995786 105002538 - MGP_C57BL6NJ_P0063183 Wdr3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063184.1 MGP_C57BL6NJ_G0028080.1 mouse_genomes_project 3 104995786 105002603 - MGP_C57BL6NJ_P0063184 Wdr3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007750.1 MGP_C57BL6NJ_G0006343.1 mouse_genomes_project 3 78206347 78240987 + lincRNA lincRNA MGP_C57BL6NJ_T0063536.1 MGP_C57BL6NJ_G0028162.1 mouse_genomes_project 3 112849784 112870597 + MGP_C57BL6NJ_P0063536 Slc16a4 protein_coding protein_coding MGP_C57BL6NJ_T0063537.1 MGP_C57BL6NJ_G0028162.1 mouse_genomes_project 3 112849848 112861101 + Slc16a4 protein_coding retained_intron MGP_C57BL6NJ_T0063538.1 MGP_C57BL6NJ_G0028162.1 mouse_genomes_project 3 112849869 112866199 + MGP_C57BL6NJ_P0063538 Slc16a4 protein_coding protein_coding MGP_C57BL6NJ_T0014596.1 MGP_C57BL6NJ_G0012641.1 mouse_genomes_project 3 116038637 116038974 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101628.1 MGP_C57BL6NJ_G0039674.1 mouse_genomes_project 3 163021387 163021468 - Gm24494 snoRNA snoRNA MGP_C57BL6NJ_T0060714.1 MGP_C57BL6NJ_G0027536.1 mouse_genomes_project 3 27695281 27801359 + MGP_C57BL6NJ_P0060714 Gm1527 protein_coding protein_coding MGP_C57BL6NJ_T0103065.1 MGP_C57BL6NJ_G0040859.1 mouse_genomes_project 3 12264562 12283777 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100250.1 MGP_C57BL6NJ_G0038296.1 mouse_genomes_project 3 50058794 50058901 + Gm23096 snRNA snRNA MGP_C57BL6NJ_T0010740.1 MGP_C57BL6NJ_G0008825.1 mouse_genomes_project 3 28561244 28561352 + Mir21b miRNA miRNA MGP_C57BL6NJ_T0061330.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58150527 58166919 - MGP_C57BL6NJ_P0061330 Tm4sf1 protein_coding protein_coding MGP_C57BL6NJ_T0061331.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58150527 58159866 - MGP_C57BL6NJ_P0061331 Tm4sf1 protein_coding protein_coding MGP_C57BL6NJ_T0061332.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58152400 58166971 - MGP_C57BL6NJ_P0061332 Tm4sf1 protein_coding protein_coding MGP_C57BL6NJ_T0061333.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58152432 58159529 - Tm4sf1 protein_coding processed_transcript MGP_C57BL6NJ_T0061334.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58157759 58160102 - MGP_C57BL6NJ_P0061334 Tm4sf1 protein_coding protein_coding MGP_C57BL6NJ_T0061335.1 MGP_C57BL6NJ_G0027646.1 mouse_genomes_project 3 58157795 58158680 - Tm4sf1 protein_coding retained_intron MGP_C57BL6NJ_T0007787.1 MGP_C57BL6NJ_G0006367.1 mouse_genomes_project 3 93388463 93394193 - 4632404H12Rik lincRNA lincRNA MGP_C57BL6NJ_T0007788.1 MGP_C57BL6NJ_G0006367.1 mouse_genomes_project 3 93389073 93393744 - 4632404H12Rik lincRNA lincRNA MGP_C57BL6NJ_T0063006.1 MGP_C57BL6NJ_G0028029.1 mouse_genomes_project 3 100587319 100589108 - MGP_C57BL6NJ_P0063006 Hist2h2ac protein_coding protein_coding MGP_C57BL6NJ_T0004368.1 MGP_C57BL6NJ_G0003840.1 mouse_genomes_project 3 32089016 32148109 + Gm37459 antisense antisense MGP_C57BL6NJ_T0004369.1 MGP_C57BL6NJ_G0003840.1 mouse_genomes_project 3 32139485 32144644 + Gm37459 antisense antisense MGP_C57BL6NJ_T0007723.1 MGP_C57BL6NJ_G0006323.1 mouse_genomes_project 3 55360924 55364113 + Gm26678 lincRNA lincRNA MGP_C57BL6NJ_T0100255.1 MGP_C57BL6NJ_G0038301.1 mouse_genomes_project 3 58825262 58825362 - Gm24531 snRNA snRNA MGP_C57BL6NJ_T0010794.1 MGP_C57BL6NJ_G0008879.1 mouse_genomes_project 3 141742470 141742564 - Gm44361 miRNA miRNA MGP_C57BL6NJ_T0063523.1 MGP_C57BL6NJ_G0028155.1 mouse_genomes_project 3 112575452 112579095 + MGP_C57BL6NJ_P0063523 Kcna3 protein_coding protein_coding MGP_C57BL6NJ_T0100289.1 MGP_C57BL6NJ_G0038335.1 mouse_genomes_project 3 100117406 100117592 - Gm26361 snRNA snRNA MGP_C57BL6NJ_T0001274.1 MGP_C57BL6NJ_G0001177.1 mouse_genomes_project 3 33281748 33282843 - TEC TEC MGP_C57BL6NJ_T0014280.1 MGP_C57BL6NJ_G0012325.1 mouse_genomes_project 3 16785947 16787148 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063144.1 MGP_C57BL6NJ_G0028069.1 mouse_genomes_project 3 102981116 103012533 - MGP_C57BL6NJ_P0063144 protein_coding protein_coding MGP_C57BL6NJ_T0063145.1 MGP_C57BL6NJ_G0028069.1 mouse_genomes_project 3 102988547 103004772 - protein_coding retained_intron MGP_C57BL6NJ_T0063146.1 MGP_C57BL6NJ_G0028069.1 mouse_genomes_project 3 102989082 102999815 - protein_coding retained_intron MGP_C57BL6NJ_T0063147.1 MGP_C57BL6NJ_G0028069.1 mouse_genomes_project 3 102989189 103008729 - MGP_C57BL6NJ_P0063147 protein_coding protein_coding MGP_C57BL6NJ_T0061453.1 MGP_C57BL6NJ_G0027678.1 mouse_genomes_project 3 63739160 63781147 - MGP_C57BL6NJ_P0061453 Dhx36 protein_coding protein_coding MGP_C57BL6NJ_T0061454.1 MGP_C57BL6NJ_G0027678.1 mouse_genomes_project 3 63741792 63743735 - Dhx36 protein_coding retained_intron MGP_C57BL6NJ_T0061455.1 MGP_C57BL6NJ_G0027678.1 mouse_genomes_project 3 63757125 63761561 - Dhx36 protein_coding retained_intron MGP_C57BL6NJ_T0061456.1 MGP_C57BL6NJ_G0027678.1 mouse_genomes_project 3 63772045 63776246 - Dhx36 protein_coding retained_intron MGP_C57BL6NJ_T0101575.1 MGP_C57BL6NJ_G0039621.1 mouse_genomes_project 3 57913051 57913181 + Gm22269 snoRNA snoRNA MGP_C57BL6NJ_T0007946.1 MGP_C57BL6NJ_G0006498.1 mouse_genomes_project 3 160216980 160219496 + 4930555A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007947.1 MGP_C57BL6NJ_G0006498.1 mouse_genomes_project 3 160217016 160219160 + 4930555A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007948.1 MGP_C57BL6NJ_G0006498.1 mouse_genomes_project 3 160217017 160218446 + 4930555A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007949.1 MGP_C57BL6NJ_G0006498.1 mouse_genomes_project 3 160217857 160219158 + 4930555A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0063997.1 MGP_C57BL6NJ_G0028260.1 mouse_genomes_project 3 129758082 129760040 + MGP_C57BL6NJ_P0063997 1810037I17Rik protein_coding protein_coding MGP_C57BL6NJ_T0001331.1 MGP_C57BL6NJ_G0001233.1 mouse_genomes_project 3 52424659 52426485 - TEC TEC MGP_C57BL6NJ_T0001332.1 MGP_C57BL6NJ_G0001233.1 mouse_genomes_project 3 52424660 52426485 - TEC pseudogene MGP_C57BL6NJ_T0100308.1 MGP_C57BL6NJ_G0038354.1 mouse_genomes_project 3 130633598 130633705 - Gm24456 snRNA snRNA MGP_C57BL6NJ_T0100273.1 MGP_C57BL6NJ_G0038319.1 mouse_genomes_project 3 89414625 89414736 + Gm23025 snRNA snRNA MGP_C57BL6NJ_T0014484.1 MGP_C57BL6NJ_G0012529.1 mouse_genomes_project 3 81561217 81561740 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004526.1 MGP_C57BL6NJ_G0003946.1 mouse_genomes_project 3 137138488 137149833 + Gm42697 antisense antisense MGP_C57BL6NJ_T0063214.1 MGP_C57BL6NJ_G0028089.1 mouse_genomes_project 3 106212092 106224017 - MGP_C57BL6NJ_P0063214 Cd2 protein_coding protein_coding MGP_C57BL6NJ_T0063215.1 MGP_C57BL6NJ_G0028089.1 mouse_genomes_project 3 106212101 106216583 - Cd2 protein_coding retained_intron MGP_C57BL6NJ_T0063216.1 MGP_C57BL6NJ_G0028089.1 mouse_genomes_project 3 106219155 106223957 - Cd2 protein_coding retained_intron MGP_C57BL6NJ_T0062648.1 MGP_C57BL6NJ_G0027968.1 mouse_genomes_project 3 98577270 98594602 + MGP_C57BL6NJ_P0062648 Tdrkh protein_coding protein_coding MGP_C57BL6NJ_T0062649.1 MGP_C57BL6NJ_G0027968.1 mouse_genomes_project 3 98577292 98589628 + MGP_C57BL6NJ_P0062649 Tdrkh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062650.1 MGP_C57BL6NJ_G0027968.1 mouse_genomes_project 3 98577309 98590381 + MGP_C57BL6NJ_P0062650 Tdrkh protein_coding protein_coding MGP_C57BL6NJ_T0062651.1 MGP_C57BL6NJ_G0027968.1 mouse_genomes_project 3 98586792 98595502 + MGP_C57BL6NJ_P0062651 Tdrkh protein_coding protein_coding MGP_C57BL6NJ_T0062652.1 MGP_C57BL6NJ_G0027968.1 mouse_genomes_project 3 98586792 98595489 + MGP_C57BL6NJ_P0062652 Tdrkh protein_coding protein_coding MGP_C57BL6NJ_T0101607.1 MGP_C57BL6NJ_G0039653.1 mouse_genomes_project 3 120953568 120953700 - Gm23750 snoRNA snoRNA MGP_C57BL6NJ_T0102480.1 MGP_C57BL6NJ_G0040357.1 mouse_genomes_project 3 40490646 40491910 + transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102481.1 MGP_C57BL6NJ_G0040357.1 mouse_genomes_project 3 40490828 40532982 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102482.1 MGP_C57BL6NJ_G0040357.1 mouse_genomes_project 3 40520177 40539315 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0014611.1 MGP_C57BL6NJ_G0012656.1 mouse_genomes_project 3 119907726 119909369 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004383.1 MGP_C57BL6NJ_G0003849.1 mouse_genomes_project 3 38433537 38450966 - C230034O21Rik antisense antisense MGP_C57BL6NJ_T0014315.1 MGP_C57BL6NJ_G0012360.1 mouse_genomes_project 3 32939857 32942792 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062690.1 MGP_C57BL6NJ_G0027974.1 mouse_genomes_project 3 98785866 98859303 - MGP_C57BL6NJ_P0062690 Tuft1 protein_coding protein_coding MGP_C57BL6NJ_T0062691.1 MGP_C57BL6NJ_G0027974.1 mouse_genomes_project 3 98785868 98859304 - MGP_C57BL6NJ_P0062691 Tuft1 protein_coding protein_coding MGP_C57BL6NJ_T0062692.1 MGP_C57BL6NJ_G0027974.1 mouse_genomes_project 3 98786105 98859232 - MGP_C57BL6NJ_P0062692 Tuft1 protein_coding protein_coding MGP_C57BL6NJ_T0062693.1 MGP_C57BL6NJ_G0027974.1 mouse_genomes_project 3 98787269 98789917 - Tuft1 protein_coding retained_intron MGP_C57BL6NJ_T0062694.1 MGP_C57BL6NJ_G0027974.1 mouse_genomes_project 3 98798433 98859232 - MGP_C57BL6NJ_P0062694 Tuft1 protein_coding protein_coding MGP_C57BL6NJ_T0014590.1 MGP_C57BL6NJ_G0012635.1 mouse_genomes_project 3 113883734 113884263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062581.1 MGP_C57BL6NJ_G0027923.1 mouse_genomes_project 3 96599448 96602223 - MGP_C57BL6NJ_P0062581 2210017I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0001525.1 MGP_C57BL6NJ_G0001425.1 mouse_genomes_project 3 164310793 164313584 + TEC TEC MGP_C57BL6NJ_T0014498.1 MGP_C57BL6NJ_G0012543.1 mouse_genomes_project 3 89364660 89365093 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103099.1 MGP_C57BL6NJ_G0040893.1 mouse_genomes_project 3 98308776 98308966 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0062875.1 MGP_C57BL6NJ_G0028005.1 mouse_genomes_project 3 99827025 99861064 + MGP_C57BL6NJ_P0062875 Ctss protein_coding protein_coding MGP_C57BL6NJ_T0062876.1 MGP_C57BL6NJ_G0028005.1 mouse_genomes_project 3 99827133 99861070 + MGP_C57BL6NJ_P0062876 Ctss protein_coding protein_coding MGP_C57BL6NJ_T0064213.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137577310 137635702 + Col25a1 protein_coding processed_transcript MGP_C57BL6NJ_T0064214.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137633710 138023149 + Col25a1 protein_coding retained_intron MGP_C57BL6NJ_T0064215.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137633710 138068569 + MGP_C57BL6NJ_P0064215 Col25a1 protein_coding protein_coding MGP_C57BL6NJ_T0064216.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137633710 138073314 + MGP_C57BL6NJ_P0064216 Col25a1 protein_coding protein_coding MGP_C57BL6NJ_T0064217.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137633710 138069758 + MGP_C57BL6NJ_P0064217 Col25a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064218.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137634303 138073324 + MGP_C57BL6NJ_P0064218 Col25a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064219.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137869792 138073324 + MGP_C57BL6NJ_P0064219 Col25a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064220.1 MGP_C57BL6NJ_G0028295.1 mouse_genomes_project 3 137951197 137953920 + Col25a1 protein_coding retained_intron MGP_C57BL6NJ_T0014335.1 MGP_C57BL6NJ_G0012380.1 mouse_genomes_project 3 37239190 37240994 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007678.1 MGP_C57BL6NJ_G0006290.1 mouse_genomes_project 3 35962135 35968882 - Gm11549 lincRNA lincRNA MGP_C57BL6NJ_T0014553.1 MGP_C57BL6NJ_G0012598.1 mouse_genomes_project 3 104246351 104246585 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061697.1 MGP_C57BL6NJ_G0027734.1 mouse_genomes_project 3 82355467 82359108 + MGP_C57BL6NJ_P0061697 4930579G24Rik protein_coding protein_coding MGP_C57BL6NJ_T0007752.1 MGP_C57BL6NJ_G0006345.1 mouse_genomes_project 3 81991278 81992279 + 6430573P05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007753.1 MGP_C57BL6NJ_G0006345.1 mouse_genomes_project 3 81991497 81993954 + 6430573P05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007754.1 MGP_C57BL6NJ_G0006345.1 mouse_genomes_project 3 81991833 81992910 + 6430573P05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007886.1 MGP_C57BL6NJ_G0006449.1 mouse_genomes_project 3 141757292 141789776 + Gm43192 lincRNA lincRNA MGP_C57BL6NJ_T0060525.1 MGP_C57BL6NJ_G0027495.1 mouse_genomes_project 3 12810800 12812838 + Car3 protein_coding retained_intron MGP_C57BL6NJ_T0060526.1 MGP_C57BL6NJ_G0027495.1 mouse_genomes_project 3 12810803 12818949 + MGP_C57BL6NJ_P0060526 Car3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060527.1 MGP_C57BL6NJ_G0027495.1 mouse_genomes_project 3 12810826 12819811 + MGP_C57BL6NJ_P0060527 Car3 protein_coding protein_coding MGP_C57BL6NJ_T0060528.1 MGP_C57BL6NJ_G0027495.1 mouse_genomes_project 3 12816465 12819357 + Car3 protein_coding retained_intron MGP_C57BL6NJ_T0007799.1 MGP_C57BL6NJ_G0006377.1 mouse_genomes_project 3 100643400 100649678 + Gm42743 lincRNA lincRNA MGP_C57BL6NJ_T0001467.1 MGP_C57BL6NJ_G0001368.1 mouse_genomes_project 3 134409213 134414830 - TEC TEC MGP_C57BL6NJ_T0014332.1 MGP_C57BL6NJ_G0012377.1 mouse_genomes_project 3 37048846 37049167 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061733.1 MGP_C57BL6NJ_G0027742.1 mouse_genomes_project 3 84860412 84865717 - Tdo2 protein_coding processed_transcript MGP_C57BL6NJ_T0061734.1 MGP_C57BL6NJ_G0027742.1 mouse_genomes_project 3 84860479 84877028 - MGP_C57BL6NJ_P0061734 Tdo2 protein_coding protein_coding MGP_C57BL6NJ_T0061735.1 MGP_C57BL6NJ_G0027742.1 mouse_genomes_project 3 84862721 84865669 - Tdo2 protein_coding retained_intron MGP_C57BL6NJ_T0063232.1 MGP_C57BL6NJ_G0028094.1 mouse_genomes_project 3 107028681 107033323 + MGP_C57BL6NJ_P0063232 Nhlh2 protein_coding protein_coding MGP_C57BL6NJ_T0063233.1 MGP_C57BL6NJ_G0028094.1 mouse_genomes_project 3 107028751 107034098 + MGP_C57BL6NJ_P0063233 Nhlh2 protein_coding protein_coding MGP_C57BL6NJ_T0063234.1 MGP_C57BL6NJ_G0028094.1 mouse_genomes_project 3 107028760 107033112 + MGP_C57BL6NJ_P0063234 Nhlh2 protein_coding protein_coding MGP_C57BL6NJ_T0014429.1 MGP_C57BL6NJ_G0012474.1 mouse_genomes_project 3 67551704 67551954 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063485.1 MGP_C57BL6NJ_G0028147.1 mouse_genomes_project 3 111674348 111675670 - protein_coding retained_intron MGP_C57BL6NJ_T0014583.1 MGP_C57BL6NJ_G0012628.1 mouse_genomes_project 3 112903356 112904101 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064755.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161173495 161208307 - Dnajb4 protein_coding processed_transcript MGP_C57BL6NJ_T0064756.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161178939 161190619 - MGP_C57BL6NJ_P0064756 Dnajb4 protein_coding protein_coding MGP_C57BL6NJ_T0064757.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161178966 161208111 - MGP_C57BL6NJ_P0064757 Dnajb4 protein_coding protein_coding MGP_C57BL6NJ_T0064758.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161180065 161208047 - MGP_C57BL6NJ_P0064758 Dnajb4 protein_coding protein_coding MGP_C57BL6NJ_T0064759.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161190150 161208085 - Dnajb4 protein_coding processed_transcript MGP_C57BL6NJ_T0064760.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161190336 161208085 - MGP_C57BL6NJ_P0064760 Dnajb4 protein_coding protein_coding MGP_C57BL6NJ_T0064761.1 MGP_C57BL6NJ_G0028401.1 mouse_genomes_project 3 161203400 161208330 - Dnajb4 protein_coding retained_intron MGP_C57BL6NJ_T0100294.1 MGP_C57BL6NJ_G0038340.1 mouse_genomes_project 3 101677183 101677293 - Gm24435 snRNA snRNA MGP_C57BL6NJ_T0064378.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143589609 143656051 + MGP_C57BL6NJ_P0064378 Slc39a8 protein_coding protein_coding MGP_C57BL6NJ_T0064379.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143589984 143625747 + Slc39a8 protein_coding retained_intron MGP_C57BL6NJ_T0064380.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143589987 143656229 + MGP_C57BL6NJ_P0064380 Slc39a8 protein_coding protein_coding MGP_C57BL6NJ_T0064381.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143590080 143656229 + MGP_C57BL6NJ_P0064381 Slc39a8 protein_coding protein_coding MGP_C57BL6NJ_T0064382.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143590380 143656043 + MGP_C57BL6NJ_P0064382 Slc39a8 protein_coding protein_coding MGP_C57BL6NJ_T0064383.1 MGP_C57BL6NJ_G0028324.1 mouse_genomes_project 3 143651813 143656225 + Slc39a8 protein_coding retained_intron MGP_C57BL6NJ_T0063240.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107183571 107234234 - MGP_C57BL6NJ_P0063240 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0063241.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107188116 107226415 - MGP_C57BL6NJ_P0063241 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0063242.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107188168 107196545 - MGP_C57BL6NJ_P0063242 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0063243.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107188171 107233504 - MGP_C57BL6NJ_P0063243 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0063244.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107192864 107196588 - Vangl1 protein_coding retained_intron MGP_C57BL6NJ_T0063245.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107193041 107195555 - Vangl1 protein_coding processed_transcript MGP_C57BL6NJ_T0063246.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107213908 107227458 - MGP_C57BL6NJ_P0063246 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0063247.1 MGP_C57BL6NJ_G0028096.1 mouse_genomes_project 3 107226383 107233422 - MGP_C57BL6NJ_P0063247 Vangl1 protein_coding protein_coding MGP_C57BL6NJ_T0014459.1 MGP_C57BL6NJ_G0012504.1 mouse_genomes_project 3 72347970 72348529 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014380.1 MGP_C57BL6NJ_G0012425.1 mouse_genomes_project 3 52129175 52129608 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004378.1 MGP_C57BL6NJ_G0003845.1 mouse_genomes_project 3 35627758 35630093 + Gm43255 antisense antisense MGP_C57BL6NJ_T0061678.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82171437 82287744 - MGP_C57BL6NJ_P0061678 Fnip2 protein_coding protein_coding MGP_C57BL6NJ_T0061679.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82172376 82181695 - Fnip2 protein_coding retained_intron MGP_C57BL6NJ_T0061680.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82174783 82287630 - MGP_C57BL6NJ_P0061680 Fnip2 protein_coding protein_coding MGP_C57BL6NJ_T0061681.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82175082 82216000 - Fnip2 protein_coding retained_intron MGP_C57BL6NJ_T0061682.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82219704 82232054 - Fnip2 protein_coding processed_transcript MGP_C57BL6NJ_T0061683.1 MGP_C57BL6NJ_G0027731.1 mouse_genomes_project 3 82221419 82287627 - Fnip2 protein_coding retained_intron MGP_C57BL6NJ_T0062210.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763458 92766606 + MGP_C57BL6NJ_P0062210 Fam189b protein_coding protein_coding MGP_C57BL6NJ_T0062211.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763518 92771156 + MGP_C57BL6NJ_P0062211 Fam189b protein_coding protein_coding MGP_C57BL6NJ_T0062212.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763519 92771154 + MGP_C57BL6NJ_P0062212 Fam189b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062213.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763895 92771155 + MGP_C57BL6NJ_P0062213 Fam189b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062214.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763948 92771153 + MGP_C57BL6NJ_P0062214 Fam189b protein_coding protein_coding MGP_C57BL6NJ_T0062215.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92763956 92771160 + MGP_C57BL6NJ_P0062215 Fam189b protein_coding protein_coding MGP_C57BL6NJ_T0062216.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92764544 92767696 + Fam189b protein_coding retained_intron MGP_C57BL6NJ_T0062217.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92769240 92770342 + Fam189b protein_coding retained_intron MGP_C57BL6NJ_T0062218.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92769798 92770341 + Fam189b protein_coding retained_intron MGP_C57BL6NJ_T0062219.1 MGP_C57BL6NJ_G0027839.1 mouse_genomes_project 3 92769848 92770645 + Fam189b protein_coding processed_transcript MGP_C57BL6NJ_T0100267.1 MGP_C57BL6NJ_G0038313.1 mouse_genomes_project 3 74965542 74965693 - Gm22451 snRNA snRNA MGP_C57BL6NJ_T0014427.1 MGP_C57BL6NJ_G0012472.1 mouse_genomes_project 3 67171233 67172040 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062563.1 MGP_C57BL6NJ_G0027907.1 mouse_genomes_project 3 96180816 96182285 + MGP_C57BL6NJ_P0062563 Sprr2b protein_coding protein_coding MGP_C57BL6NJ_T0004463.1 MGP_C57BL6NJ_G0003908.1 mouse_genomes_project 3 102362475 102368247 + Gm43076 antisense antisense MGP_C57BL6NJ_T0004464.1 MGP_C57BL6NJ_G0003908.1 mouse_genomes_project 3 102362665 102365190 + Gm43076 antisense antisense MGP_C57BL6NJ_T0001241.1 MGP_C57BL6NJ_G0001144.1 mouse_genomes_project 3 7847795 7849762 + TEC TEC MGP_C57BL6NJ_T0063594.1 MGP_C57BL6NJ_G0028177.1 mouse_genomes_project 3 113598037 113602382 - MGP_C57BL6NJ_P0063594 Gstm2 protein_coding protein_coding MGP_C57BL6NJ_T0063595.1 MGP_C57BL6NJ_G0028177.1 mouse_genomes_project 3 113601049 113602410 - Gstm2 protein_coding retained_intron MGP_C57BL6NJ_T0063596.1 MGP_C57BL6NJ_G0028177.1 mouse_genomes_project 3 113601470 113602410 - Gstm2 protein_coding retained_intron MGP_C57BL6NJ_T0103070.1 MGP_C57BL6NJ_G0040864.1 mouse_genomes_project 3 60510179 60510444 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007952.1 MGP_C57BL6NJ_G0006501.1 mouse_genomes_project 3 160970780 160975364 + Gm43619 lincRNA lincRNA MGP_C57BL6NJ_T0064816.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401322 161473837 + MGP_C57BL6NJ_P0064816 Zzz3 protein_coding protein_coding MGP_C57BL6NJ_T0064817.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401374 161436918 + Zzz3 protein_coding retained_intron MGP_C57BL6NJ_T0064818.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401852 161477189 + MGP_C57BL6NJ_P0064818 Zzz3 protein_coding protein_coding MGP_C57BL6NJ_T0064819.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401881 161458192 + Zzz3 protein_coding processed_transcript MGP_C57BL6NJ_T0064820.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401928 161457890 + Zzz3 protein_coding processed_transcript MGP_C57BL6NJ_T0064821.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161401981 161473915 + MGP_C57BL6NJ_P0064821 Zzz3 protein_coding protein_coding MGP_C57BL6NJ_T0064822.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161402533 161473840 + MGP_C57BL6NJ_P0064822 Zzz3 protein_coding protein_coding MGP_C57BL6NJ_T0064823.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161402543 161477189 + MGP_C57BL6NJ_P0064823 Zzz3 protein_coding protein_coding MGP_C57BL6NJ_T0064824.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161425380 161470501 + MGP_C57BL6NJ_P0064824 Zzz3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064825.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161444962 161448152 + Zzz3 protein_coding retained_intron MGP_C57BL6NJ_T0064826.1 MGP_C57BL6NJ_G0028406.1 mouse_genomes_project 3 161469519 161473181 + Zzz3 protein_coding processed_transcript MGP_C57BL6NJ_T0007914.1 MGP_C57BL6NJ_G0006474.1 mouse_genomes_project 3 151913849 151927381 + Gm33651 lincRNA lincRNA MGP_C57BL6NJ_T0103115.1 MGP_C57BL6NJ_G0040909.1 mouse_genomes_project 3 111844570 111845672 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007926.1 MGP_C57BL6NJ_G0006484.1 mouse_genomes_project 3 152704831 152706366 + Gm43447 lincRNA lincRNA MGP_C57BL6NJ_T0063220.1 MGP_C57BL6NJ_G0028091.1 mouse_genomes_project 3 106540556 106570808 - MGP_C57BL6NJ_P0063220 Atp1a1 protein_coding protein_coding MGP_C57BL6NJ_T0063221.1 MGP_C57BL6NJ_G0028091.1 mouse_genomes_project 3 106540653 106541898 - Atp1a1 protein_coding retained_intron MGP_C57BL6NJ_T0063222.1 MGP_C57BL6NJ_G0028091.1 mouse_genomes_project 3 106550125 106553373 - Atp1a1 protein_coding retained_intron MGP_C57BL6NJ_T0062773.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99384744 99387702 + MGP_C57BL6NJ_P0062773 Tmod4 protein_coding protein_coding MGP_C57BL6NJ_T0062774.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99384782 99389258 + MGP_C57BL6NJ_P0062774 Tmod4 protein_coding protein_coding MGP_C57BL6NJ_T0062775.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99384783 99389254 + MGP_C57BL6NJ_P0062775 Tmod4 protein_coding protein_coding MGP_C57BL6NJ_T0062776.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99386472 99388793 + Tmod4 protein_coding retained_intron MGP_C57BL6NJ_T0062777.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99387218 99387915 + Tmod4 protein_coding processed_transcript MGP_C57BL6NJ_T0062778.1 MGP_C57BL6NJ_G0027987.1 mouse_genomes_project 3 99387701 99389257 + Tmod4 protein_coding retained_intron MGP_C57BL6NJ_T0062572.1 MGP_C57BL6NJ_G0027915.1 mouse_genomes_project 3 96417217 96418561 + MGP_C57BL6NJ_P0062572 Sprr2k protein_coding protein_coding MGP_C57BL6NJ_T0062487.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94103444 94146208 - MGP_C57BL6NJ_P0062487 Ints3 protein_coding protein_coding MGP_C57BL6NJ_T0062488.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94103452 94146434 - MGP_C57BL6NJ_P0062488 Ints3 protein_coding protein_coding MGP_C57BL6NJ_T0062489.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94104132 94115271 - Ints3 protein_coding retained_intron MGP_C57BL6NJ_T0062490.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94104132 94146518 - MGP_C57BL6NJ_P0062490 Ints3 protein_coding protein_coding MGP_C57BL6NJ_T0062491.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94106423 94112832 - Ints3 protein_coding retained_intron MGP_C57BL6NJ_T0062492.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94113161 94114731 - Ints3 protein_coding retained_intron MGP_C57BL6NJ_T0062493.1 MGP_C57BL6NJ_G0027882.1 mouse_genomes_project 3 94119947 94146527 - Ints3 protein_coding retained_intron MGP_C57BL6NJ_T0001540.1 MGP_C57BL6NJ_G0001440.1 mouse_genomes_project 3 169385153 169387524 + TEC TEC MGP_C57BL6NJ_T0014496.1 MGP_C57BL6NJ_G0012541.1 mouse_genomes_project 3 89121409 89121884 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062557.1 MGP_C57BL6NJ_G0027901.1 mouse_genomes_project 3 94528444 94530339 - MGP_C57BL6NJ_P0062557 Gm5849 protein_coding protein_coding MGP_C57BL6NJ_T0001452.1 MGP_C57BL6NJ_G0001353.1 mouse_genomes_project 3 133705186 133709619 + TEC TEC MGP_C57BL6NJ_T0007957.1 MGP_C57BL6NJ_G0006505.1 mouse_genomes_project 3 165330087 165335775 - Gm42947 lincRNA lincRNA MGP_C57BL6NJ_T0060849.1 MGP_C57BL6NJ_G0027562.1 mouse_genomes_project 3 31956023 32087786 + MGP_C57BL6NJ_P0060849 Usp13 protein_coding protein_coding MGP_C57BL6NJ_T0060850.1 MGP_C57BL6NJ_G0027562.1 mouse_genomes_project 3 31956048 32083001 + MGP_C57BL6NJ_P0060850 Usp13 protein_coding protein_coding MGP_C57BL6NJ_T0060851.1 MGP_C57BL6NJ_G0027562.1 mouse_genomes_project 3 31956188 32064066 + MGP_C57BL6NJ_P0060851 Usp13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060852.1 MGP_C57BL6NJ_G0027562.1 mouse_genomes_project 3 32064035 32083009 + MGP_C57BL6NJ_P0060852 Usp13 protein_coding protein_coding MGP_C57BL6NJ_T0064797.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161273726 161340910 - MGP_C57BL6NJ_P0064797 Fam73a protein_coding protein_coding MGP_C57BL6NJ_T0064798.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161275808 161340908 - MGP_C57BL6NJ_P0064798 Fam73a protein_coding protein_coding MGP_C57BL6NJ_T0064799.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161282681 161340886 - MGP_C57BL6NJ_P0064799 Fam73a protein_coding protein_coding MGP_C57BL6NJ_T0064800.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161282848 161286656 - Fam73a protein_coding retained_intron MGP_C57BL6NJ_T0064801.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161291751 161320154 - MGP_C57BL6NJ_P0064801 Fam73a protein_coding protein_coding MGP_C57BL6NJ_T0064802.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161291925 161298701 - Fam73a protein_coding retained_intron MGP_C57BL6NJ_T0064803.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161298243 161338466 - MGP_C57BL6NJ_P0064803 Fam73a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064804.1 MGP_C57BL6NJ_G0028404.1 mouse_genomes_project 3 161338012 161340887 - Fam73a protein_coding retained_intron MGP_C57BL6NJ_T0063578.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499439 113502305 + MGP_C57BL6NJ_P0063578 Gstm5 protein_coding protein_coding MGP_C57BL6NJ_T0063579.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499454 113502194 + MGP_C57BL6NJ_P0063579 Gstm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063580.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499464 113502305 + MGP_C57BL6NJ_P0063580 Gstm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063581.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499559 113501964 + MGP_C57BL6NJ_P0063581 Gstm5 protein_coding protein_coding MGP_C57BL6NJ_T0063582.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499572 113502168 + MGP_C57BL6NJ_P0063582 Gstm5 protein_coding protein_coding MGP_C57BL6NJ_T0063583.1 MGP_C57BL6NJ_G0028173.1 mouse_genomes_project 3 113499865 113502297 + MGP_C57BL6NJ_P0063583 Gstm5 protein_coding protein_coding MGP_C57BL6NJ_T0014368.1 MGP_C57BL6NJ_G0012413.1 mouse_genomes_project 3 49920754 49921315 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014732.1 MGP_C57BL6NJ_G0012777.1 mouse_genomes_project 3 169003392 169003614 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014375.1 MGP_C57BL6NJ_G0012420.1 mouse_genomes_project 3 50688250 50688839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001470.1 MGP_C57BL6NJ_G0001371.1 mouse_genomes_project 3 134549745 134553376 - TEC TEC MGP_C57BL6NJ_T0014492.1 MGP_C57BL6NJ_G0012537.1 mouse_genomes_project 3 86675993 86678210 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014310.1 MGP_C57BL6NJ_G0012355.1 mouse_genomes_project 3 29996808 29997271 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061615.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570123 71572600 + Nmd3 protein_coding retained_intron MGP_C57BL6NJ_T0061616.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570123 71604567 + MGP_C57BL6NJ_P0061616 Nmd3 protein_coding protein_coding MGP_C57BL6NJ_T0061617.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570170 71583251 + MGP_C57BL6NJ_P0061617 Nmd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061618.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570221 71578672 + MGP_C57BL6NJ_P0061618 Nmd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061619.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570228 71580114 + Nmd3 protein_coding retained_intron MGP_C57BL6NJ_T0061620.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71570393 71574548 + MGP_C57BL6NJ_P0061620 Nmd3 protein_coding protein_coding MGP_C57BL6NJ_T0061621.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71572374 71588197 + Nmd3 protein_coding retained_intron MGP_C57BL6NJ_T0061622.1 MGP_C57BL6NJ_G0027716.1 mouse_genomes_project 3 71594635 71597246 + Nmd3 protein_coding retained_intron MGP_C57BL6NJ_T0007758.1 MGP_C57BL6NJ_G0006349.1 mouse_genomes_project 3 83804007 83814391 + Gm42468 lincRNA lincRNA MGP_C57BL6NJ_T0001280.1 MGP_C57BL6NJ_G0001183.1 mouse_genomes_project 3 35347832 35348664 - TEC TEC MGP_C57BL6NJ_T0100314.1 MGP_C57BL6NJ_G0038360.1 mouse_genomes_project 3 144907107 144907214 + Gm26107 snRNA snRNA MGP_C57BL6NJ_T0004396.1 MGP_C57BL6NJ_G0003861.1 mouse_genomes_project 3 56160595 56186253 - Gm42609 antisense antisense MGP_C57BL6NJ_T0004397.1 MGP_C57BL6NJ_G0003861.1 mouse_genomes_project 3 56163398 56184155 - Gm42609 antisense antisense MGP_C57BL6NJ_T0099406.1 MGP_C57BL6NJ_G0037463.1 mouse_genomes_project 3 108785435 108786695 + Gm43066 sense_intronic sense_intronic MGP_C57BL6NJ_T0062284.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92935285 92947321 - MGP_C57BL6NJ_P0062284 Adam15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062285.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936383 92947328 - MGP_C57BL6NJ_P0062285 Adam15 protein_coding protein_coding MGP_C57BL6NJ_T0062286.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936383 92947335 - MGP_C57BL6NJ_P0062286 Adam15 protein_coding protein_coding MGP_C57BL6NJ_T0062287.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936384 92937901 - Adam15 protein_coding processed_transcript MGP_C57BL6NJ_T0062288.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936387 92937184 - Adam15 protein_coding processed_transcript MGP_C57BL6NJ_T0062289.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936387 92947298 - MGP_C57BL6NJ_P0062289 Adam15 protein_coding protein_coding MGP_C57BL6NJ_T0062290.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936391 92947314 - MGP_C57BL6NJ_P0062290 Adam15 protein_coding protein_coding MGP_C57BL6NJ_T0062291.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936488 92937096 - Adam15 protein_coding retained_intron MGP_C57BL6NJ_T0062292.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936658 92937663 - Adam15 protein_coding retained_intron MGP_C57BL6NJ_T0062293.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92936817 92940423 - Adam15 protein_coding retained_intron MGP_C57BL6NJ_T0062294.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92939475 92947313 - Adam15 protein_coding retained_intron MGP_C57BL6NJ_T0062295.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92943866 92947299 - Adam15 protein_coding retained_intron MGP_C57BL6NJ_T0062296.1 MGP_C57BL6NJ_G0027851.1 mouse_genomes_project 3 92945856 92946446 - Adam15 protein_coding processed_transcript MGP_C57BL6NJ_T0001279.1 MGP_C57BL6NJ_G0001182.1 mouse_genomes_project 3 35233256 35233814 + TEC TEC MGP_C57BL6NJ_T0063673.1 MGP_C57BL6NJ_G0028195.1 mouse_genomes_project 3 114194784 114198437 + 1700013F07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0063674.1 MGP_C57BL6NJ_G0028195.1 mouse_genomes_project 3 114198277 114206064 + 1700013F07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0063675.1 MGP_C57BL6NJ_G0028195.1 mouse_genomes_project 3 114198284 114207706 + MGP_C57BL6NJ_P0063675 1700013F07Rik protein_coding protein_coding MGP_C57BL6NJ_T0001377.1 MGP_C57BL6NJ_G0001278.1 mouse_genomes_project 3 78412191 78414368 + TEC TEC MGP_C57BL6NJ_T0014336.1 MGP_C57BL6NJ_G0012381.1 mouse_genomes_project 3 37480475 37480951 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014654.1 MGP_C57BL6NJ_G0012699.1 mouse_genomes_project 3 136653612 136654376 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064465.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146397148 146429267 - MGP_C57BL6NJ_P0064465 Metap1 protein_coding protein_coding MGP_C57BL6NJ_T0064466.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146397873 146407147 - MGP_C57BL6NJ_P0064466 Metap1 protein_coding protein_coding MGP_C57BL6NJ_T0064467.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146404460 146413402 - Metap1 protein_coding retained_intron MGP_C57BL6NJ_T0064468.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146404521 146413490 - Metap1 protein_coding retained_intron MGP_C57BL6NJ_T0064469.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146407145 146420000 - Metap1 protein_coding processed_transcript MGP_C57BL6NJ_T0064470.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146413745 146429151 - MGP_C57BL6NJ_P0064470 Metap1 protein_coding protein_coding MGP_C57BL6NJ_T0064471.1 MGP_C57BL6NJ_G0028345.1 mouse_genomes_project 3 146418464 146429121 - Metap1 protein_coding retained_intron MGP_C57BL6NJ_T0063071.1 MGP_C57BL6NJ_G0028051.1 mouse_genomes_project 3 101264196 101297438 - MGP_C57BL6NJ_P0063071 Cd160 protein_coding protein_coding MGP_C57BL6NJ_T0063072.1 MGP_C57BL6NJ_G0028051.1 mouse_genomes_project 3 101264196 101297438 - MGP_C57BL6NJ_P0063072 Cd160 protein_coding protein_coding MGP_C57BL6NJ_T0063073.1 MGP_C57BL6NJ_G0028051.1 mouse_genomes_project 3 101265588 101281398 - MGP_C57BL6NJ_P0063073 Cd160 protein_coding protein_coding MGP_C57BL6NJ_T0063074.1 MGP_C57BL6NJ_G0028051.1 mouse_genomes_project 3 101266036 101275749 - MGP_C57BL6NJ_P0063074 Cd160 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0062266.1 MGP_C57BL6NJ_G0027846.1 mouse_genomes_project 3 92851381 92862449 + MGP_C57BL6NJ_P0062266 Dpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062267.1 MGP_C57BL6NJ_G0027846.1 mouse_genomes_project 3 92861923 92862449 + MGP_C57BL6NJ_P0062267 Dpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062268.1 MGP_C57BL6NJ_G0027846.1 mouse_genomes_project 3 92862010 92862451 + Dpm3 protein_coding retained_intron MGP_C57BL6NJ_T0014341.1 MGP_C57BL6NJ_G0012386.1 mouse_genomes_project 3 38799490 38799776 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064184.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137241030 137247515 - MGP_C57BL6NJ_P0064184 Gar1 protein_coding protein_coding MGP_C57BL6NJ_T0064185.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137241034 137245485 - MGP_C57BL6NJ_P0064185 Gar1 protein_coding protein_coding MGP_C57BL6NJ_T0064186.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137241037 137241793 - Gar1 protein_coding retained_intron MGP_C57BL6NJ_T0064187.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137241670 137243399 - Gar1 protein_coding retained_intron MGP_C57BL6NJ_T0064188.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137241689 137247479 - Gar1 protein_coding processed_transcript MGP_C57BL6NJ_T0064189.1 MGP_C57BL6NJ_G0028289.1 mouse_genomes_project 3 137242961 137247051 - MGP_C57BL6NJ_P0064189 Gar1 protein_coding protein_coding MGP_C57BL6NJ_T0064291.1 MGP_C57BL6NJ_G0028311.1 mouse_genomes_project 3 140653064 140788887 - MGP_C57BL6NJ_P0064291 protein_coding protein_coding MGP_C57BL6NJ_T0064292.1 MGP_C57BL6NJ_G0028311.1 mouse_genomes_project 3 140657218 140674938 - MGP_C57BL6NJ_P0064292 protein_coding protein_coding MGP_C57BL6NJ_T0064293.1 MGP_C57BL6NJ_G0028311.1 mouse_genomes_project 3 140698710 140788887 - MGP_C57BL6NJ_P0064293 protein_coding protein_coding MGP_C57BL6NJ_T0064294.1 MGP_C57BL6NJ_G0028311.1 mouse_genomes_project 3 140714098 140788947 - MGP_C57BL6NJ_P0064294 protein_coding protein_coding MGP_C57BL6NJ_T0001535.1 MGP_C57BL6NJ_G0001435.1 mouse_genomes_project 3 167508892 167511362 - TEC TEC MGP_C57BL6NJ_T0001489.1 MGP_C57BL6NJ_G0001389.1 mouse_genomes_project 3 139065828 139069172 - TEC TEC MGP_C57BL6NJ_T0062761.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99306831 99364994 - MGP_C57BL6NJ_P0062761 Pip5k1a protein_coding protein_coding MGP_C57BL6NJ_T0062762.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99306844 99365049 - MGP_C57BL6NJ_P0062762 Pip5k1a protein_coding protein_coding MGP_C57BL6NJ_T0062763.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99306846 99364975 - MGP_C57BL6NJ_P0062763 Pip5k1a protein_coding protein_coding MGP_C57BL6NJ_T0062764.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99306870 99364898 - MGP_C57BL6NJ_P0062764 Pip5k1a protein_coding protein_coding MGP_C57BL6NJ_T0062765.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99324788 99332358 - Pip5k1a protein_coding processed_transcript MGP_C57BL6NJ_T0062766.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99331946 99337065 - Pip5k1a protein_coding retained_intron MGP_C57BL6NJ_T0062767.1 MGP_C57BL6NJ_G0027985.1 mouse_genomes_project 3 99354349 99364942 - Pip5k1a protein_coding processed_transcript MGP_C57BL6NJ_T0014675.1 MGP_C57BL6NJ_G0012720.1 mouse_genomes_project 3 142915502 142915927 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014559.1 MGP_C57BL6NJ_G0012604.1 mouse_genomes_project 3 105535380 105535671 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014579.1 MGP_C57BL6NJ_G0012624.1 mouse_genomes_project 3 110216130 110216384 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001403.1 MGP_C57BL6NJ_G0001304.1 mouse_genomes_project 3 101247891 101248413 + TEC TEC MGP_C57BL6NJ_T0007829.1 MGP_C57BL6NJ_G0006403.1 mouse_genomes_project 3 112580528 112595372 + AI504432 lincRNA lincRNA MGP_C57BL6NJ_T0064449.1 MGP_C57BL6NJ_G0028341.1 mouse_genomes_project 3 146174046 146198819 + Adh1 protein_coding processed_transcript MGP_C57BL6NJ_T0064450.1 MGP_C57BL6NJ_G0028341.1 mouse_genomes_project 3 146192299 146207938 + MGP_C57BL6NJ_P0064450 Adh1 protein_coding protein_coding MGP_C57BL6NJ_T0064451.1 MGP_C57BL6NJ_G0028341.1 mouse_genomes_project 3 146192450 146196990 + Adh1 protein_coding retained_intron MGP_C57BL6NJ_T0064452.1 MGP_C57BL6NJ_G0028341.1 mouse_genomes_project 3 146192456 146207938 + MGP_C57BL6NJ_P0064452 Adh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063682.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114256349 114311729 + MGP_C57BL6NJ_P0063682 Wdr47 protein_coding protein_coding MGP_C57BL6NJ_T0063683.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114256422 114284687 + MGP_C57BL6NJ_P0063683 Wdr47 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063684.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114256459 114281423 + Wdr47 protein_coding retained_intron MGP_C57BL6NJ_T0063685.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114284883 114290686 + Wdr47 protein_coding processed_transcript MGP_C57BL6NJ_T0063686.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114285264 114293535 + Wdr47 protein_coding retained_intron MGP_C57BL6NJ_T0063687.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114289379 114299125 + Wdr47 protein_coding processed_transcript MGP_C57BL6NJ_T0063688.1 MGP_C57BL6NJ_G0028198.1 mouse_genomes_project 3 114293183 114303923 + Wdr47 protein_coding retained_intron MGP_C57BL6NJ_T0060487.1 MGP_C57BL6NJ_G0027484.1 mouse_genomes_project 3 7945826 7949749 - MGP_C57BL6NJ_P0060487 Slc10a5 protein_coding protein_coding MGP_C57BL6NJ_T0010752.1 MGP_C57BL6NJ_G0008837.1 mouse_genomes_project 3 67218328 67218467 + Mir8120 miRNA miRNA MGP_C57BL6NJ_T0064938.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167418603 167482069 + MGP_C57BL6NJ_P0064938 Ankrd13c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064939.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167418778 167480426 + MGP_C57BL6NJ_P0064939 Ankrd13c protein_coding protein_coding MGP_C57BL6NJ_T0064940.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167418778 167482675 + MGP_C57BL6NJ_P0064940 Ankrd13c protein_coding protein_coding MGP_C57BL6NJ_T0064941.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167418906 167481478 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0064942.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167462998 167469222 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0064943.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167466200 167478515 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0064944.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167468112 167475635 + Ankrd13c protein_coding processed_transcript MGP_C57BL6NJ_T0064945.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167468690 167475605 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0064946.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167472988 167477612 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0064947.1 MGP_C57BL6NJ_G0028427.1 mouse_genomes_project 3 167473913 167475651 + Ankrd13c protein_coding retained_intron MGP_C57BL6NJ_T0007867.1 MGP_C57BL6NJ_G0006432.1 mouse_genomes_project 3 135198811 135200984 + Gm43053 lincRNA lincRNA MGP_C57BL6NJ_T0063034.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101078991 101091880 + Pex11b protein_coding processed_transcript MGP_C57BL6NJ_T0063035.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101079045 101091880 + MGP_C57BL6NJ_P0063035 Pex11b protein_coding protein_coding MGP_C57BL6NJ_T0063037.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101079115 101090547 + MGP_C57BL6NJ_P0063037 Pex11b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063038.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101079268 101080569 + Pex11b protein_coding retained_intron MGP_C57BL6NJ_T0063039.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101079287 101091240 + MGP_C57BL6NJ_P0063039 Pex11b protein_coding protein_coding MGP_C57BL6NJ_T0063040.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101079448 101091240 + MGP_C57BL6NJ_P0063040 Pex11b protein_coding protein_coding MGP_C57BL6NJ_T0063041.1 MGP_C57BL6NJ_G0028043.1 mouse_genomes_project 3 101080668 101090314 + Pex11b protein_coding retained_intron MGP_C57BL6NJ_T0004423.1 MGP_C57BL6NJ_G0003881.1 mouse_genomes_project 3 91564797 91574475 - 1700113A16Rik antisense antisense MGP_C57BL6NJ_T0004424.1 MGP_C57BL6NJ_G0003881.1 mouse_genomes_project 3 91564797 91574568 - 1700113A16Rik antisense antisense MGP_C57BL6NJ_T0004425.1 MGP_C57BL6NJ_G0003881.1 mouse_genomes_project 3 91565250 91574489 - 1700113A16Rik antisense antisense MGP_C57BL6NJ_T0061138.1 MGP_C57BL6NJ_G0027608.1 mouse_genomes_project 3 46507701 46513723 - MGP_C57BL6NJ_P0061138 Pabpc4l protein_coding protein_coding MGP_C57BL6NJ_T0061139.1 MGP_C57BL6NJ_G0027608.1 mouse_genomes_project 3 46507701 46513445 - MGP_C57BL6NJ_P0061139 Pabpc4l protein_coding protein_coding MGP_C57BL6NJ_T0061140.1 MGP_C57BL6NJ_G0027608.1 mouse_genomes_project 3 46512195 46513445 - MGP_C57BL6NJ_P0061140 Pabpc4l protein_coding protein_coding MGP_C57BL6NJ_T0061141.1 MGP_C57BL6NJ_G0027608.1 mouse_genomes_project 3 46512559 46513424 - MGP_C57BL6NJ_P0061141 Pabpc4l protein_coding protein_coding MGP_C57BL6NJ_T0100256.1 MGP_C57BL6NJ_G0038302.1 mouse_genomes_project 3 59218875 59218982 - Gm26166 snRNA snRNA MGP_C57BL6NJ_T0063978.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129210375 129217495 + Bcar3 protein_coding retained_intron MGP_C57BL6NJ_T0063979.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129210396 129325637 + MGP_C57BL6NJ_P0063979 Bcar3 protein_coding protein_coding MGP_C57BL6NJ_T0063980.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129210441 129265176 + Bcar3 protein_coding processed_transcript MGP_C57BL6NJ_T0063981.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129277297 129302017 + MGP_C57BL6NJ_P0063981 Bcar3 protein_coding protein_coding MGP_C57BL6NJ_T0063982.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129298243 129302018 + MGP_C57BL6NJ_P0063982 Bcar3 protein_coding protein_coding MGP_C57BL6NJ_T0063983.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129301632 129306318 + Bcar3 protein_coding retained_intron MGP_C57BL6NJ_T0063984.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129304697 129306506 + MGP_C57BL6NJ_P0063984 Bcar3 protein_coding protein_coding MGP_C57BL6NJ_T0063985.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129305790 129318656 + MGP_C57BL6NJ_P0063985 Bcar3 protein_coding protein_coding MGP_C57BL6NJ_T0063986.1 MGP_C57BL6NJ_G0028255.1 mouse_genomes_project 3 129320091 129320851 + Bcar3 protein_coding retained_intron MGP_C57BL6NJ_T0100281.1 MGP_C57BL6NJ_G0038327.1 mouse_genomes_project 3 93612631 93612796 - Gm24046 snRNA snRNA MGP_C57BL6NJ_T0062952.1 MGP_C57BL6NJ_G0028017.1 mouse_genomes_project 3 100211529 100219581 - MGP_C57BL6NJ_P0062952 BC028528 protein_coding protein_coding MGP_C57BL6NJ_T0062953.1 MGP_C57BL6NJ_G0028017.1 mouse_genomes_project 3 100211533 100219531 - MGP_C57BL6NJ_P0062953 BC028528 protein_coding protein_coding MGP_C57BL6NJ_T0062954.1 MGP_C57BL6NJ_G0028017.1 mouse_genomes_project 3 100212548 100219506 - MGP_C57BL6NJ_P0062954 BC028528 protein_coding protein_coding MGP_C57BL6NJ_T0062955.1 MGP_C57BL6NJ_G0028017.1 mouse_genomes_project 3 100215534 100219527 - BC028528 protein_coding processed_transcript MGP_C57BL6NJ_T0062956.1 MGP_C57BL6NJ_G0028017.1 mouse_genomes_project 3 100216021 100219557 - BC028528 protein_coding retained_intron MGP_C57BL6NJ_T0014574.1 MGP_C57BL6NJ_G0012619.1 mouse_genomes_project 3 108883623 108884023 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064118.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134743700 134814078 + MGP_C57BL6NJ_P0064118 Zgrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064119.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134743700 134814083 + MGP_C57BL6NJ_P0064119 Zgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0064120.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134743713 134813195 + MGP_C57BL6NJ_P0064120 Zgrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064121.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134743713 134814085 + MGP_C57BL6NJ_P0064121 Zgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0064122.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134743844 134754951 + MGP_C57BL6NJ_P0064122 Zgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0064123.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134776981 134813047 + MGP_C57BL6NJ_P0064123 Zgrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064124.1 MGP_C57BL6NJ_G0028277.1 mouse_genomes_project 3 134787226 134793999 + Zgrf1 protein_coding retained_intron MGP_C57BL6NJ_T0064453.1 MGP_C57BL6NJ_G0028342.1 mouse_genomes_project 3 146236479 146256171 + MGP_C57BL6NJ_P0064453 Adh6a protein_coding protein_coding MGP_C57BL6NJ_T0064454.1 MGP_C57BL6NJ_G0028342.1 mouse_genomes_project 3 146236479 146256890 + MGP_C57BL6NJ_P0064454 Adh6a protein_coding protein_coding MGP_C57BL6NJ_T0014338.1 MGP_C57BL6NJ_G0012383.1 mouse_genomes_project 3 37975948 37976780 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007786.1 MGP_C57BL6NJ_G0006366.1 mouse_genomes_project 3 91993407 91994700 - Gm37584 lincRNA lincRNA MGP_C57BL6NJ_T0004382.1 MGP_C57BL6NJ_G0003848.1 mouse_genomes_project 3 36820630 36836117 - Fgf2os antisense antisense MGP_C57BL6NJ_T0101604.1 MGP_C57BL6NJ_G0039650.1 mouse_genomes_project 3 113657135 113657266 + Gm25592 snoRNA snoRNA MGP_C57BL6NJ_T0014706.1 MGP_C57BL6NJ_G0012751.1 mouse_genomes_project 3 153030503 153031065 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103117.1 MGP_C57BL6NJ_G0040911.1 mouse_genomes_project 3 113510413 113514881 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014376.1 MGP_C57BL6NJ_G0012421.1 mouse_genomes_project 3 51046869 51047245 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014674.1 MGP_C57BL6NJ_G0012719.1 mouse_genomes_project 3 142872674 142873350 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063350.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108992798 109005296 + MGP_C57BL6NJ_P0063350 Ap4b1 protein_coding protein_coding MGP_C57BL6NJ_T0063352.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108992871 109005101 + MGP_C57BL6NJ_P0063352 Ap4b1 protein_coding protein_coding MGP_C57BL6NJ_T0063353.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108992878 109005296 + MGP_C57BL6NJ_P0063353 Ap4b1 protein_coding protein_coding MGP_C57BL6NJ_T0063354.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108992906 109005298 + MGP_C57BL6NJ_P0063354 Ap4b1 protein_coding protein_coding MGP_C57BL6NJ_T0063355.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108993114 109005034 + MGP_C57BL6NJ_P0063355 Ap4b1 protein_coding protein_coding MGP_C57BL6NJ_T0063356.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108993142 108998145 + Ap4b1 protein_coding processed_transcript MGP_C57BL6NJ_T0063357.1 MGP_C57BL6NJ_G0028115.1 mouse_genomes_project 3 108998334 109003957 + MGP_C57BL6NJ_P0063357 Ap4b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060556.1 MGP_C57BL6NJ_G0027507.1 mouse_genomes_project 3 17397029 17429305 - MGP_C57BL6NJ_P0060556 Armc1 protein_coding protein_coding MGP_C57BL6NJ_T0010758.1 MGP_C57BL6NJ_G0008843.1 mouse_genomes_project 3 88636554 88636676 + Mir466k miRNA miRNA MGP_C57BL6NJ_T0060786.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30129811 30158622 + MGP_C57BL6NJ_P0060786 Skil protein_coding protein_coding MGP_C57BL6NJ_T0060787.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30129814 30136147 + Skil protein_coding retained_intron MGP_C57BL6NJ_T0060788.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30129814 30158626 + MGP_C57BL6NJ_P0060788 Skil protein_coding protein_coding MGP_C57BL6NJ_T0060789.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30129818 30132646 + MGP_C57BL6NJ_P0060789 Skil protein_coding protein_coding MGP_C57BL6NJ_T0060790.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30129878 30154034 + MGP_C57BL6NJ_P0060790 Skil protein_coding protein_coding MGP_C57BL6NJ_T0060791.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30131586 30153745 + MGP_C57BL6NJ_P0060791 Skil protein_coding protein_coding MGP_C57BL6NJ_T0060792.1 MGP_C57BL6NJ_G0027549.1 mouse_genomes_project 3 30132084 30153367 + MGP_C57BL6NJ_P0060792 Skil protein_coding unknown_likely_coding MGP_C57BL6NJ_T0062320.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019240 93030628 + MGP_C57BL6NJ_P0062320 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062321.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019348 93027015 + MGP_C57BL6NJ_P0062321 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062322.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019348 93030640 + MGP_C57BL6NJ_P0062322 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062323.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019368 93024713 + MGP_C57BL6NJ_P0062323 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062324.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019391 93027171 + MGP_C57BL6NJ_P0062324 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062325.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93019488 93028956 + MGP_C57BL6NJ_P0062325 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062326.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93021278 93024512 + Shc1 protein_coding retained_intron MGP_C57BL6NJ_T0062327.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93022273 93029711 + MGP_C57BL6NJ_P0062327 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062328.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93022287 93027171 + MGP_C57BL6NJ_P0062328 Shc1 protein_coding protein_coding MGP_C57BL6NJ_T0062329.1 MGP_C57BL6NJ_G0027858.1 mouse_genomes_project 3 93024994 93027827 + Shc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063613.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113718892 113728201 + MGP_C57BL6NJ_P0063613 Gnat2 protein_coding protein_coding MGP_C57BL6NJ_T0063614.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113718983 113723151 + MGP_C57BL6NJ_P0063614 Gnat2 protein_coding protein_coding MGP_C57BL6NJ_T0063615.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113719241 113725186 + MGP_C57BL6NJ_P0063615 Gnat2 protein_coding protein_coding MGP_C57BL6NJ_T0063616.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113719295 113728199 + Gnat2 protein_coding retained_intron MGP_C57BL6NJ_T0063617.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113720551 113725201 + MGP_C57BL6NJ_P0063617 Gnat2 protein_coding protein_coding MGP_C57BL6NJ_T0063618.1 MGP_C57BL6NJ_G0028181.1 mouse_genomes_project 3 113724011 113728060 + Gnat2 protein_coding processed_transcript MGP_C57BL6NJ_T0062738.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99223741 99255862 + MGP_C57BL6NJ_P0062738 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062739.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99223841 99255168 + MGP_C57BL6NJ_P0062739 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062740.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99223886 99255164 + MGP_C57BL6NJ_P0062740 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062741.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99225127 99255800 + MGP_C57BL6NJ_P0062741 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062742.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99225154 99244976 + MGP_C57BL6NJ_P0062742 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062743.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99247960 99255197 + MGP_C57BL6NJ_P0062743 Pi4kb protein_coding protein_coding MGP_C57BL6NJ_T0062744.1 MGP_C57BL6NJ_G0027982.1 mouse_genomes_project 3 99253331 99255265 + Pi4kb protein_coding processed_transcript MGP_C57BL6NJ_T0014346.1 MGP_C57BL6NJ_G0012391.1 mouse_genomes_project 3 41120064 41120527 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007927.1 MGP_C57BL6NJ_G0006485.1 mouse_genomes_project 3 154167224 154169386 + Gm17501 lincRNA lincRNA MGP_C57BL6NJ_T0007928.1 MGP_C57BL6NJ_G0006485.1 mouse_genomes_project 3 154169006 154198600 + Gm17501 lincRNA lincRNA MGP_C57BL6NJ_T0064342.1 MGP_C57BL6NJ_G0028320.1 mouse_genomes_project 3 143122090 143140486 - MGP_C57BL6NJ_P0064342 Cisd2 protein_coding protein_coding MGP_C57BL6NJ_T0064343.1 MGP_C57BL6NJ_G0028320.1 mouse_genomes_project 3 143125692 143139968 - MGP_C57BL6NJ_P0064343 Cisd2 protein_coding protein_coding MGP_C57BL6NJ_T0064344.1 MGP_C57BL6NJ_G0028320.1 mouse_genomes_project 3 143136512 143139965 - Cisd2 protein_coding retained_intron MGP_C57BL6NJ_T0064345.1 MGP_C57BL6NJ_G0028320.1 mouse_genomes_project 3 143137418 143139640 - Cisd2 protein_coding processed_transcript MGP_C57BL6NJ_T0001346.1 MGP_C57BL6NJ_G0001247.1 mouse_genomes_project 3 56114215 56116347 + TEC TEC MGP_C57BL6NJ_T0007797.1 MGP_C57BL6NJ_G0006375.1 mouse_genomes_project 3 99672700 99688669 - lincRNA lincRNA MGP_C57BL6NJ_T0064984.1 MGP_C57BL6NJ_G0028432.1 mouse_genomes_project 3 169144229 169172311 + MGP_C57BL6NJ_P0064984 Rpe65 protein_coding protein_coding MGP_C57BL6NJ_T0064985.1 MGP_C57BL6NJ_G0028432.1 mouse_genomes_project 3 169144272 169151438 + MGP_C57BL6NJ_P0064985 Rpe65 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064986.1 MGP_C57BL6NJ_G0028432.1 mouse_genomes_project 3 169144287 169171789 + MGP_C57BL6NJ_P0064986 Rpe65 protein_coding protein_coding MGP_C57BL6NJ_T0001303.1 MGP_C57BL6NJ_G0001206.1 mouse_genomes_project 3 45435936 45439104 + TEC TEC MGP_C57BL6NJ_T0102489.1 MGP_C57BL6NJ_G0040362.1 mouse_genomes_project 3 134651873 134655955 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0064484.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146900686 147057184 - MGP_C57BL6NJ_P0064484 Rap1gds1 protein_coding protein_coding MGP_C57BL6NJ_T0064485.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146900690 147057184 - MGP_C57BL6NJ_P0064485 Rap1gds1 protein_coding protein_coding MGP_C57BL6NJ_T0064486.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146900694 147057184 - MGP_C57BL6NJ_P0064486 Rap1gds1 protein_coding protein_coding MGP_C57BL6NJ_T0064487.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146916246 147057184 - MGP_C57BL6NJ_P0064487 Rap1gds1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064488.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146916249 147057184 - MGP_C57BL6NJ_P0064488 Rap1gds1 protein_coding protein_coding MGP_C57BL6NJ_T0064489.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146932843 146962159 - Rap1gds1 protein_coding retained_intron MGP_C57BL6NJ_T0064490.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 146993154 147057184 - Rap1gds1 protein_coding retained_intron MGP_C57BL6NJ_T0064491.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 147001867 147056913 - Rap1gds1 protein_coding processed_transcript MGP_C57BL6NJ_T0064492.1 MGP_C57BL6NJ_G0028348.1 mouse_genomes_project 3 147030205 147057184 - Rap1gds1 protein_coding retained_intron MGP_C57BL6NJ_T0102228.1 MGP_C57BL6NJ_G0040230.1 mouse_genomes_project 3 20141932 20189625 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102229.1 MGP_C57BL6NJ_G0040230.1 mouse_genomes_project 3 20142011 20151138 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0060669.1 MGP_C57BL6NJ_G0027528.1 mouse_genomes_project 3 26065562 26072222 + MGP_C57BL6NJ_P0060669 Ghsr protein_coding protein_coding MGP_C57BL6NJ_T0014572.1 MGP_C57BL6NJ_G0012617.1 mouse_genomes_project 3 108309438 108310193 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007953.1 MGP_C57BL6NJ_G0006502.1 mouse_genomes_project 3 162206541 162226474 - Gm43832 lincRNA lincRNA MGP_C57BL6NJ_T0007954.1 MGP_C57BL6NJ_G0006502.1 mouse_genomes_project 3 162210063 162219073 - Gm43832 lincRNA lincRNA MGP_C57BL6NJ_T0010778.1 MGP_C57BL6NJ_G0008863.1 mouse_genomes_project 3 114231238 114231312 - Gm22860 miRNA miRNA MGP_C57BL6NJ_T0007618.1 MGP_C57BL6NJ_G0006247.1 mouse_genomes_project 3 6941688 6974480 + C030034L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007619.1 MGP_C57BL6NJ_G0006247.1 mouse_genomes_project 3 6941692 6975396 + C030034L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007620.1 MGP_C57BL6NJ_G0006247.1 mouse_genomes_project 3 6941704 6952528 + C030034L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0010801.1 MGP_C57BL6NJ_G0008886.1 mouse_genomes_project 3 150894417 150894504 - Mir6381 miRNA miRNA MGP_C57BL6NJ_T0007706.1 MGP_C57BL6NJ_G0006308.1 mouse_genomes_project 3 49062819 49075263 - Gm37190 lincRNA lincRNA MGP_C57BL6NJ_T0063736.1 MGP_C57BL6NJ_G0028207.1 mouse_genomes_project 3 114666370 114725852 - MGP_C57BL6NJ_P0063736 Fam102b protein_coding protein_coding MGP_C57BL6NJ_T0001291.1 MGP_C57BL6NJ_G0001194.1 mouse_genomes_project 3 37503977 37504536 + TEC TEC MGP_C57BL6NJ_T0062586.1 MGP_C57BL6NJ_G0027927.1 mouse_genomes_project 3 96670282 96671985 - MGP_C57BL6NJ_P0062586 Lce1a2 protein_coding protein_coding MGP_C57BL6NJ_T0011814.1 MGP_C57BL6NJ_G0009899.1 mouse_genomes_project 3 162695139 162695407 + Gm22136 misc_RNA misc_RNA MGP_C57BL6NJ_T0007910.1 MGP_C57BL6NJ_G0006470.1 mouse_genomes_project 3 151649892 151651505 + Gm43613 lincRNA lincRNA MGP_C57BL6NJ_T0014537.1 MGP_C57BL6NJ_G0012582.1 mouse_genomes_project 3 100101437 100101584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010805.1 MGP_C57BL6NJ_G0008890.1 mouse_genomes_project 3 166965012 166965083 + Mir186 miRNA miRNA MGP_C57BL6NJ_T0064549.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151071723 151169939 - MGP_C57BL6NJ_P0064549 Pkn2 protein_coding protein_coding MGP_C57BL6NJ_T0064550.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151074530 151169850 - MGP_C57BL6NJ_P0064550 Pkn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064551.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151074632 151164104 - MGP_C57BL6NJ_P0064551 Pkn2 protein_coding protein_coding MGP_C57BL6NJ_T0064552.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151074632 151164104 - MGP_C57BL6NJ_P0064552 Pkn2 protein_coding protein_coding MGP_C57BL6NJ_T0064553.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151080750 151169855 - Pkn2 protein_coding processed_transcript MGP_C57BL6NJ_T0064554.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151080832 151083919 - Pkn2 protein_coding retained_intron MGP_C57BL6NJ_T0064555.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151085607 151169925 - Pkn2 protein_coding processed_transcript MGP_C57BL6NJ_T0064556.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151091361 151103318 - MGP_C57BL6NJ_P0064556 Pkn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064557.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151092478 151094302 - Pkn2 protein_coding retained_intron MGP_C57BL6NJ_T0064558.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151093272 151114279 - MGP_C57BL6NJ_P0064558 Pkn2 protein_coding protein_coding MGP_C57BL6NJ_T0064559.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151103028 151114242 - Pkn2 protein_coding retained_intron MGP_C57BL6NJ_T0064560.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151115221 151169918 - Pkn2 protein_coding retained_intron MGP_C57BL6NJ_T0064561.1 MGP_C57BL6NJ_G0028361.1 mouse_genomes_project 3 151135521 151138313 - Pkn2 protein_coding retained_intron MGP_C57BL6NJ_T0060425.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799043 2819999 - MGP_C57BL6NJ_P0060425 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0060426.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799043 2819999 - MGP_C57BL6NJ_P0060426 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0060427.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799354 2802585 - MGP_C57BL6NJ_P0060427 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0060428.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799355 2819994 - MGP_C57BL6NJ_P0060428 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0060429.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799355 2820088 - MGP_C57BL6NJ_P0060429 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0060430.1 MGP_C57BL6NJ_G0027464.1 mouse_genomes_project 3 2799359 2819977 - MGP_C57BL6NJ_P0060430 Pex2 protein_coding protein_coding MGP_C57BL6NJ_T0014396.1 MGP_C57BL6NJ_G0012441.1 mouse_genomes_project 3 58404266 58404816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014521.1 MGP_C57BL6NJ_G0012566.1 mouse_genomes_project 3 97154311 97154443 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062604.1 MGP_C57BL6NJ_G0027944.1 mouse_genomes_project 3 97051566 97053049 - MGP_C57BL6NJ_P0062604 Crct1 protein_coding protein_coding MGP_C57BL6NJ_T0062605.1 MGP_C57BL6NJ_G0027944.1 mouse_genomes_project 3 97051880 97053031 - MGP_C57BL6NJ_P0062605 Crct1 protein_coding protein_coding MGP_C57BL6NJ_T0007719.1 MGP_C57BL6NJ_G0006319.1 mouse_genomes_project 3 53485115 53500374 - Gm20750 lincRNA lincRNA MGP_C57BL6NJ_T0014516.1 MGP_C57BL6NJ_G0012561.1 mouse_genomes_project 3 96288171 96288308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001321.1 MGP_C57BL6NJ_G0001224.1 mouse_genomes_project 3 52050251 52052351 - TEC TEC MGP_C57BL6NJ_T0014444.1 MGP_C57BL6NJ_G0012489.1 mouse_genomes_project 3 70599699 70602319 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100290.1 MGP_C57BL6NJ_G0038336.1 mouse_genomes_project 3 100753531 100753696 - Rnu1b1 snRNA snRNA MGP_C57BL6NJ_T0014655.1 MGP_C57BL6NJ_G0012700.1 mouse_genomes_project 3 136818365 136819408 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007722.1 MGP_C57BL6NJ_G0006322.1 mouse_genomes_project 3 54595153 54613789 + Gm31026 lincRNA lincRNA MGP_C57BL6NJ_T0063799.1 MGP_C57BL6NJ_G0028222.1 mouse_genomes_project 3 122212951 122213963 + Extl2 protein_coding processed_transcript MGP_C57BL6NJ_T0063800.1 MGP_C57BL6NJ_G0028222.1 mouse_genomes_project 3 122212989 122229570 + Extl2 protein_coding processed_transcript MGP_C57BL6NJ_T0063801.1 MGP_C57BL6NJ_G0028222.1 mouse_genomes_project 3 122213294 122216332 + Extl2 protein_coding processed_transcript MGP_C57BL6NJ_T0063802.1 MGP_C57BL6NJ_G0028222.1 mouse_genomes_project 3 122216155 122232923 + MGP_C57BL6NJ_P0063802 Extl2 protein_coding protein_coding MGP_C57BL6NJ_T0061641.1 MGP_C57BL6NJ_G0027723.1 mouse_genomes_project 3 77679056 77709131 - MGP_C57BL6NJ_P0061641 Serpini2 protein_coding protein_coding MGP_C57BL6NJ_T0063697.1 MGP_C57BL6NJ_G0028200.1 mouse_genomes_project 3 114344510 114388467 - MGP_C57BL6NJ_P0063697 Gpsm2 protein_coding protein_coding MGP_C57BL6NJ_T0063698.1 MGP_C57BL6NJ_G0028200.1 mouse_genomes_project 3 114367591 114368681 - Gpsm2 protein_coding retained_intron MGP_C57BL6NJ_T0063699.1 MGP_C57BL6NJ_G0028200.1 mouse_genomes_project 3 114368007 114377830 - MGP_C57BL6NJ_P0063699 Gpsm2 protein_coding protein_coding MGP_C57BL6NJ_T0063700.1 MGP_C57BL6NJ_G0028200.1 mouse_genomes_project 3 114369143 114388274 - Gpsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0063029.1 MGP_C57BL6NJ_G0028042.1 mouse_genomes_project 3 101073555 101077414 + MGP_C57BL6NJ_P0063029 Rbm8a protein_coding protein_coding MGP_C57BL6NJ_T0063030.1 MGP_C57BL6NJ_G0028042.1 mouse_genomes_project 3 101073562 101077414 + MGP_C57BL6NJ_P0063030 Rbm8a protein_coding protein_coding MGP_C57BL6NJ_T0063031.1 MGP_C57BL6NJ_G0028042.1 mouse_genomes_project 3 101073584 101077419 + MGP_C57BL6NJ_P0063031 Rbm8a protein_coding protein_coding MGP_C57BL6NJ_T0063032.1 MGP_C57BL6NJ_G0028042.1 mouse_genomes_project 3 101073595 101074177 + Rbm8a protein_coding retained_intron MGP_C57BL6NJ_T0063033.1 MGP_C57BL6NJ_G0028042.1 mouse_genomes_project 3 101074843 101075523 + Rbm8a protein_coding retained_intron MGP_C57BL6NJ_T0001439.1 MGP_C57BL6NJ_G0001340.1 mouse_genomes_project 3 128452818 128455530 - TEC TEC MGP_C57BL6NJ_T0014646.1 MGP_C57BL6NJ_G0012691.1 mouse_genomes_project 3 131518767 131519371 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014589.1 MGP_C57BL6NJ_G0012634.1 mouse_genomes_project 3 113640005 113641066 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014234.1 MGP_C57BL6NJ_G0012279.1 mouse_genomes_project 3 3931677 3931936 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061875.1 MGP_C57BL6NJ_G0027780.1 mouse_genomes_project 3 90684668 90697860 + MGP_C57BL6NJ_P0061875 Cd5l protein_coding protein_coding MGP_C57BL6NJ_T0004549.1 MGP_C57BL6NJ_G0003962.1 mouse_genomes_project 3 151022917 151023938 - Gm15540 antisense antisense MGP_C57BL6NJ_T0100322.1 MGP_C57BL6NJ_G0038368.1 mouse_genomes_project 3 160909791 160909853 - Gm25056 snRNA snRNA MGP_C57BL6NJ_T0101562.1 MGP_C57BL6NJ_G0039608.1 mouse_genomes_project 3 32577374 32577517 - Gm24780 snoRNA snoRNA MGP_C57BL6NJ_T0061813.1 MGP_C57BL6NJ_G0027762.1 mouse_genomes_project 3 87566478 87658075 - MGP_C57BL6NJ_P0061813 Arfip1 protein_coding protein_coding MGP_C57BL6NJ_T0061815.1 MGP_C57BL6NJ_G0027762.1 mouse_genomes_project 3 87567589 87658026 - MGP_C57BL6NJ_P0061815 Arfip1 protein_coding protein_coding MGP_C57BL6NJ_T0061816.1 MGP_C57BL6NJ_G0027762.1 mouse_genomes_project 3 87568121 87658166 - MGP_C57BL6NJ_P0061816 Arfip1 protein_coding protein_coding MGP_C57BL6NJ_T0004468.1 MGP_C57BL6NJ_G0003911.1 mouse_genomes_project 3 106372712 106373751 - Gm42538 antisense antisense MGP_C57BL6NJ_T0004469.1 MGP_C57BL6NJ_G0003911.1 mouse_genomes_project 3 106373371 106375034 - Gm42538 antisense antisense MGP_C57BL6NJ_T0001385.1 MGP_C57BL6NJ_G0001286.1 mouse_genomes_project 3 87983227 87987113 + TEC TEC MGP_C57BL6NJ_T0063370.1 MGP_C57BL6NJ_G0028119.1 mouse_genomes_project 3 109105922 109166887 + MGP_C57BL6NJ_P0063370 Rsbn1 protein_coding protein_coding MGP_C57BL6NJ_T0063371.1 MGP_C57BL6NJ_G0028119.1 mouse_genomes_project 3 109105953 109166910 + MGP_C57BL6NJ_P0063371 Rsbn1 protein_coding protein_coding MGP_C57BL6NJ_T0063372.1 MGP_C57BL6NJ_G0028119.1 mouse_genomes_project 3 109106369 109164145 + MGP_C57BL6NJ_P0063372 Rsbn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063373.1 MGP_C57BL6NJ_G0028119.1 mouse_genomes_project 3 109123544 109160410 + MGP_C57BL6NJ_P0063373 Rsbn1 protein_coding protein_coding MGP_C57BL6NJ_T0014640.1 MGP_C57BL6NJ_G0012685.1 mouse_genomes_project 3 129880897 129881321 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102483.1 MGP_C57BL6NJ_G0040358.1 mouse_genomes_project 3 59779908 59783553 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102484.1 MGP_C57BL6NJ_G0040358.1 mouse_genomes_project 3 59781643 59804147 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0004477.1 MGP_C57BL6NJ_G0003916.1 mouse_genomes_project 3 109164809 109168855 - Phtf1os antisense antisense MGP_C57BL6NJ_T0061763.1 MGP_C57BL6NJ_G0027751.1 mouse_genomes_project 3 85967659 85973849 + MGP_C57BL6NJ_P0061763 Fga protein_coding protein_coding MGP_C57BL6NJ_T0061764.1 MGP_C57BL6NJ_G0027751.1 mouse_genomes_project 3 85967798 85975213 + MGP_C57BL6NJ_P0061764 Fga protein_coding protein_coding MGP_C57BL6NJ_T0063995.1 MGP_C57BL6NJ_G0028258.1 mouse_genomes_project 3 129727534 129731969 + MGP_C57BL6NJ_P0063995 Fabp2 protein_coding protein_coding MGP_C57BL6NJ_T0014342.1 MGP_C57BL6NJ_G0012387.1 mouse_genomes_project 3 39431751 39432031 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014651.1 MGP_C57BL6NJ_G0012696.1 mouse_genomes_project 3 134899093 134901042 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060557.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17455055 17483270 + MGP_C57BL6NJ_P0060557 Mtfr1 protein_coding protein_coding MGP_C57BL6NJ_T0060558.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17455057 17487302 + MGP_C57BL6NJ_P0060558 Mtfr1 protein_coding protein_coding MGP_C57BL6NJ_T0060559.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17455075 17486953 + MGP_C57BL6NJ_P0060559 Mtfr1 protein_coding protein_coding MGP_C57BL6NJ_T0060560.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17455838 17488400 + MGP_C57BL6NJ_P0060560 Mtfr1 protein_coding protein_coding MGP_C57BL6NJ_T0060561.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17455993 17487139 + MGP_C57BL6NJ_P0060561 Mtfr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060562.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17456002 17483279 + MGP_C57BL6NJ_P0060562 Mtfr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060563.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17456042 17479127 + MGP_C57BL6NJ_P0060563 Mtfr1 protein_coding protein_coding MGP_C57BL6NJ_T0060564.1 MGP_C57BL6NJ_G0027508.1 mouse_genomes_project 3 17479147 17483798 + Mtfr1 protein_coding retained_intron MGP_C57BL6NJ_T0063959.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128777522 128931582 + MGP_C57BL6NJ_P0063959 Abca4 protein_coding protein_coding MGP_C57BL6NJ_T0063960.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128781282 128833759 + Abca4 protein_coding processed_transcript MGP_C57BL6NJ_T0063961.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128809127 128824135 + Abca4 protein_coding processed_transcript MGP_C57BL6NJ_T0063962.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128856025 128875951 + Abca4 protein_coding retained_intron MGP_C57BL6NJ_T0063963.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128857739 128873762 + Abca4 protein_coding retained_intron MGP_C57BL6NJ_T0063964.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128879295 128931584 + MGP_C57BL6NJ_P0063964 Abca4 protein_coding protein_coding MGP_C57BL6NJ_T0063965.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128911273 128914488 + Abca4 protein_coding retained_intron MGP_C57BL6NJ_T0063966.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128913986 128921887 + Abca4 protein_coding retained_intron MGP_C57BL6NJ_T0063967.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128921526 128922554 + Abca4 protein_coding processed_transcript MGP_C57BL6NJ_T0063968.1 MGP_C57BL6NJ_G0028252.1 mouse_genomes_project 3 128924535 128931646 + Abca4 protein_coding retained_intron MGP_C57BL6NJ_T0001344.1 MGP_C57BL6NJ_G0001245.1 mouse_genomes_project 3 54132003 54133108 + TEC TEC MGP_C57BL6NJ_T0001533.1 MGP_C57BL6NJ_G0001433.1 mouse_genomes_project 3 167346250 167348481 - TEC TEC MGP_C57BL6NJ_T0064746.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161076936 161093069 - Gipc2 protein_coding processed_transcript MGP_C57BL6NJ_T0064747.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161077242 161159957 - MGP_C57BL6NJ_P0064747 Gipc2 protein_coding protein_coding MGP_C57BL6NJ_T0064748.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161077244 161091579 - Gipc2 protein_coding processed_transcript MGP_C57BL6NJ_T0064749.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161077285 161091127 - Gipc2 protein_coding processed_transcript MGP_C57BL6NJ_T0064750.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161077422 161087401 - Gipc2 protein_coding retained_intron MGP_C57BL6NJ_T0064751.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161077597 161136266 - Gipc2 protein_coding processed_transcript MGP_C57BL6NJ_T0064752.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161086420 161092883 - Gipc2 protein_coding retained_intron MGP_C57BL6NJ_T0064753.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161113997 161125718 - Gipc2 protein_coding retained_intron MGP_C57BL6NJ_T0064754.1 MGP_C57BL6NJ_G0028400.1 mouse_genomes_project 3 161116592 161159477 - Gipc2 protein_coding processed_transcript MGP_C57BL6NJ_T0061557.1 MGP_C57BL6NJ_G0027701.1 mouse_genomes_project 3 69125000 69164877 - MGP_C57BL6NJ_P0061557 Rarres1 protein_coding protein_coding MGP_C57BL6NJ_T0061346.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633215 58740861 + MGP_C57BL6NJ_P0061346 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061347.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633216 58676730 + MGP_C57BL6NJ_P0061347 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061348.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633228 58715286 + Rnf13 protein_coding processed_transcript MGP_C57BL6NJ_T0061349.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633235 58739518 + Rnf13 protein_coding processed_transcript MGP_C57BL6NJ_T0061350.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633235 58740863 + MGP_C57BL6NJ_P0061350 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061351.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633238 58731930 + MGP_C57BL6NJ_P0061351 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061352.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633266 58740749 + MGP_C57BL6NJ_P0061352 Rnf13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061353.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633273 58665421 + MGP_C57BL6NJ_P0061353 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061354.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633273 58738862 + MGP_C57BL6NJ_P0061354 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061355.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58633273 58705768 + MGP_C57BL6NJ_P0061355 Rnf13 protein_coding protein_coding MGP_C57BL6NJ_T0061356.1 MGP_C57BL6NJ_G0027651.1 mouse_genomes_project 3 58704061 58707934 + Rnf13 protein_coding retained_intron MGP_C57BL6NJ_T0062703.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99055873 99101049 + MGP_C57BL6NJ_P0062703 Pogz protein_coding protein_coding MGP_C57BL6NJ_T0062704.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99056003 99080326 + Pogz protein_coding processed_transcript MGP_C57BL6NJ_T0062705.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99056019 99085241 + Pogz protein_coding retained_intron MGP_C57BL6NJ_T0062706.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99056019 99101047 + MGP_C57BL6NJ_P0062706 Pogz protein_coding protein_coding MGP_C57BL6NJ_T0062707.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99056019 99099055 + MGP_C57BL6NJ_P0062707 Pogz protein_coding protein_coding MGP_C57BL6NJ_T0062708.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99056019 99099598 + MGP_C57BL6NJ_P0062708 Pogz protein_coding protein_coding MGP_C57BL6NJ_T0062709.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99082460 99083283 + Pogz protein_coding retained_intron MGP_C57BL6NJ_T0062710.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99083251 99091022 + MGP_C57BL6NJ_P0062710 Pogz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062711.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99090031 99092471 + Pogz protein_coding processed_transcript MGP_C57BL6NJ_T0062712.1 MGP_C57BL6NJ_G0027978.1 mouse_genomes_project 3 99096377 99097689 + Pogz protein_coding retained_intron MGP_C57BL6NJ_T0061325.1 MGP_C57BL6NJ_G0027645.1 mouse_genomes_project 3 56565416 56567908 + MGP_C57BL6NJ_P0061325 Mab21l1 protein_coding protein_coding MGP_C57BL6NJ_T0103067.1 MGP_C57BL6NJ_G0040861.1 mouse_genomes_project 3 19980515 19982214 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001416.1 MGP_C57BL6NJ_G0001317.1 mouse_genomes_project 3 113488728 113490611 + TEC TEC MGP_C57BL6NJ_T0099395.1 MGP_C57BL6NJ_G0037452.1 mouse_genomes_project 3 105533407 105535210 - Gm43463 sense_intronic sense_intronic MGP_C57BL6NJ_T0001428.1 MGP_C57BL6NJ_G0001329.1 mouse_genomes_project 3 124954830 124958961 + TEC TEC MGP_C57BL6NJ_T0001406.1 MGP_C57BL6NJ_G0001307.1 mouse_genomes_project 3 101988616 101989579 + TEC TEC MGP_C57BL6NJ_T0100326.1 MGP_C57BL6NJ_G0038372.1 mouse_genomes_project 3 166817964 166818071 - Gm23379 snRNA snRNA MGP_C57BL6NJ_T0064742.1 MGP_C57BL6NJ_G0028398.1 mouse_genomes_project 3 160723389 160727545 - MGP_C57BL6NJ_P0064742 Ifi44l protein_coding protein_coding MGP_C57BL6NJ_T0099432.1 MGP_C57BL6NJ_G0037489.1 mouse_genomes_project 3 111144844 111148076 - Gm43329 sense_intronic sense_intronic MGP_C57BL6NJ_T0014409.1 MGP_C57BL6NJ_G0012454.1 mouse_genomes_project 3 60767653 60767795 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007796.1 MGP_C57BL6NJ_G0006374.1 mouse_genomes_project 3 98973586 98975065 + lincRNA lincRNA MGP_C57BL6NJ_T0014578.1 MGP_C57BL6NJ_G0012623.1 mouse_genomes_project 3 109908958 109909301 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063141.1 MGP_C57BL6NJ_G0028067.1 mouse_genomes_project 3 102889120 102903710 + MGP_C57BL6NJ_P0063141 Reg4 protein_coding protein_coding MGP_C57BL6NJ_T0064595.1 MGP_C57BL6NJ_G0028371.1 mouse_genomes_project 3 153571502 153600334 - MGP_C57BL6NJ_P0064595 Clca2 protein_coding protein_coding MGP_C57BL6NJ_T0064596.1 MGP_C57BL6NJ_G0028371.1 mouse_genomes_project 3 153572994 153600336 - MGP_C57BL6NJ_P0064596 Clca2 protein_coding protein_coding MGP_C57BL6NJ_T0064597.1 MGP_C57BL6NJ_G0028371.1 mouse_genomes_project 3 153600073 153600673 - Clca2 protein_coding processed_transcript MGP_C57BL6NJ_T0010780.1 MGP_C57BL6NJ_G0008865.1 mouse_genomes_project 3 122182923 122182977 + Mir669n miRNA miRNA MGP_C57BL6NJ_T0061753.1 MGP_C57BL6NJ_G0027747.1 mouse_genomes_project 3 85454098 85463800 - MGP_C57BL6NJ_P0061753 Npy2r protein_coding protein_coding MGP_C57BL6NJ_T0061754.1 MGP_C57BL6NJ_G0027747.1 mouse_genomes_project 3 85454101 85463768 - MGP_C57BL6NJ_P0061754 Npy2r protein_coding protein_coding MGP_C57BL6NJ_T0061755.1 MGP_C57BL6NJ_G0027747.1 mouse_genomes_project 3 85455664 85463676 - MGP_C57BL6NJ_P0061755 Npy2r protein_coding protein_coding MGP_C57BL6NJ_T0061756.1 MGP_C57BL6NJ_G0027747.1 mouse_genomes_project 3 85455664 85463676 - MGP_C57BL6NJ_P0061756 Npy2r protein_coding protein_coding MGP_C57BL6NJ_T0061467.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022039 65187862 - MGP_C57BL6NJ_P0061467 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061468.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022042 65028160 - Plch1 protein_coding retained_intron MGP_C57BL6NJ_T0061469.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022042 65071466 - Plch1 protein_coding retained_intron MGP_C57BL6NJ_T0061470.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022042 65188106 - MGP_C57BL6NJ_P0061470 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061471.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022042 65187814 - MGP_C57BL6NJ_P0061471 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061472.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022042 65188080 - MGP_C57BL6NJ_P0061472 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061473.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022043 65187814 - MGP_C57BL6NJ_P0061473 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061474.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65022536 65240856 - MGP_C57BL6NJ_P0061474 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061475.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65023238 65109009 - MGP_C57BL6NJ_P0061475 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061476.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65024738 65027849 - MGP_C57BL6NJ_P0061476 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061477.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65027621 65188182 - MGP_C57BL6NJ_P0061477 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061478.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65118192 65240826 - MGP_C57BL6NJ_P0061478 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0061479.1 MGP_C57BL6NJ_G0027681.1 mouse_genomes_project 3 65208938 65240757 - MGP_C57BL6NJ_P0061479 Plch1 protein_coding protein_coding MGP_C57BL6NJ_T0010800.1 MGP_C57BL6NJ_G0008885.1 mouse_genomes_project 3 148085072 148085194 + Mir7j miRNA miRNA MGP_C57BL6NJ_T0064890.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791294 163816497 + MGP_C57BL6NJ_P0064890 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064891.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791294 163816495 + MGP_C57BL6NJ_P0064891 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064892.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791294 163816497 + MGP_C57BL6NJ_P0064892 Cryz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064893.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791727 163815482 + MGP_C57BL6NJ_P0064893 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064894.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791780 163804874 + MGP_C57BL6NJ_P0064894 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064895.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791805 163811916 + MGP_C57BL6NJ_P0064895 Cryz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064896.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791928 163804756 + MGP_C57BL6NJ_P0064896 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064897.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163791978 163807168 + MGP_C57BL6NJ_P0064897 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064898.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163792014 163811816 + MGP_C57BL6NJ_P0064898 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064899.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163800249 163815485 + MGP_C57BL6NJ_P0064899 Cryz protein_coding protein_coding MGP_C57BL6NJ_T0064900.1 MGP_C57BL6NJ_G0028418.1 mouse_genomes_project 3 163809201 163812677 + Cryz protein_coding retained_intron MGP_C57BL6NJ_T0063552.1 MGP_C57BL6NJ_G0028166.1 mouse_genomes_project 3 113134631 113136018 - MGP_C57BL6NJ_P0063552 Ubl4b protein_coding protein_coding MGP_C57BL6NJ_T0064868.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163034861 163058266 - MGP_C57BL6NJ_P0064868 Acadm protein_coding protein_coding MGP_C57BL6NJ_T0064869.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163037999 163042449 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064870.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163038140 163051443 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064871.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163042430 163050427 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064872.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163049941 163052308 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064873.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163049947 163058101 - MGP_C57BL6NJ_P0064873 Acadm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064874.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163050001 163058080 - MGP_C57BL6NJ_P0064874 Acadm protein_coding protein_coding MGP_C57BL6NJ_T0064875.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163051928 163058076 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064876.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163052290 163055537 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0064877.1 MGP_C57BL6NJ_G0028414.1 mouse_genomes_project 3 163055235 163058097 - Acadm protein_coding retained_intron MGP_C57BL6NJ_T0061808.1 MGP_C57BL6NJ_G0027761.1 mouse_genomes_project 3 87509880 87549162 - MGP_C57BL6NJ_P0061808 Fhdc1 protein_coding protein_coding MGP_C57BL6NJ_T0061809.1 MGP_C57BL6NJ_G0027761.1 mouse_genomes_project 3 87511717 87548224 - MGP_C57BL6NJ_P0061809 Fhdc1 protein_coding protein_coding MGP_C57BL6NJ_T0061810.1 MGP_C57BL6NJ_G0027761.1 mouse_genomes_project 3 87511790 87549126 - MGP_C57BL6NJ_P0061810 Fhdc1 protein_coding protein_coding MGP_C57BL6NJ_T0061811.1 MGP_C57BL6NJ_G0027761.1 mouse_genomes_project 3 87516491 87522504 - Fhdc1 protein_coding retained_intron MGP_C57BL6NJ_T0061812.1 MGP_C57BL6NJ_G0027761.1 mouse_genomes_project 3 87543255 87547715 - Fhdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0103122.1 MGP_C57BL6NJ_G0040916.1 mouse_genomes_project 3 128872400 128989238 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001308.1 MGP_C57BL6NJ_G0001211.1 mouse_genomes_project 3 50840155 50844156 - TEC TEC MGP_C57BL6NJ_T0014533.1 MGP_C57BL6NJ_G0012578.1 mouse_genomes_project 3 99406568 99407104 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014692.1 MGP_C57BL6NJ_G0012737.1 mouse_genomes_project 3 147118578 147119016 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014635.1 MGP_C57BL6NJ_G0012680.1 mouse_genomes_project 3 128901176 128901588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064318.1 MGP_C57BL6NJ_G0028315.1 mouse_genomes_project 3 142512783 142621019 + MGP_C57BL6NJ_P0064318 Tacr3 protein_coding protein_coding MGP_C57BL6NJ_T0001259.1 MGP_C57BL6NJ_G0001162.1 mouse_genomes_project 3 29238838 29240961 - TEC TEC MGP_C57BL6NJ_T0018394.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33335828 33338523 + processed_transcript retained_intron MGP_C57BL6NJ_T0018395.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33335996 33906902 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018396.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33336016 33946728 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018397.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33442096 33906977 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018398.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33442209 33775610 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018399.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33825751 33946552 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018400.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33825804 33948689 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018401.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33825811 33840701 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018402.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33825815 33906940 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018403.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33826139 33826206 + processed_transcript misc_RNA MGP_C57BL6NJ_T0018404.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33857072 33946692 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018405.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33905662 33948689 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018406.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33906667 33946595 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018407.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33906745 33951547 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018408.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33906790 33951510 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018409.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33906997 33954829 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018410.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33925908 33946844 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0018411.1 MGP_C57BL6NJ_G0015893.1 mouse_genomes_project 3 33935115 33948691 + processed_transcript sense_overlapping MGP_C57BL6NJ_T0014326.1 MGP_C57BL6NJ_G0012371.1 mouse_genomes_project 3 36154770 36155022 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014639.1 MGP_C57BL6NJ_G0012684.1 mouse_genomes_project 3 129758315 129758510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007955.1 MGP_C57BL6NJ_G0006503.1 mouse_genomes_project 3 162884908 162887691 - 5730460C07Rik lincRNA lincRNA MGP_C57BL6NJ_T0100245.1 MGP_C57BL6NJ_G0038291.1 mouse_genomes_project 3 39265634 39265794 + Gm23796 snRNA snRNA MGP_C57BL6NJ_T0004461.1 MGP_C57BL6NJ_G0003906.1 mouse_genomes_project 3 101470068 101472118 - 9230114J08Rik antisense antisense MGP_C57BL6NJ_T0001263.1 MGP_C57BL6NJ_G0001166.1 mouse_genomes_project 3 29589667 29590557 - TEC TEC MGP_C57BL6NJ_T0101621.1 MGP_C57BL6NJ_G0039667.1 mouse_genomes_project 3 152016604 152016729 + Gm24728 snoRNA snoRNA MGP_C57BL6NJ_T0001286.1 MGP_C57BL6NJ_G0001189.1 mouse_genomes_project 3 37140670 37142748 - TEC TEC MGP_C57BL6NJ_T0001357.1 MGP_C57BL6NJ_G0001258.1 mouse_genomes_project 3 59478091 59479283 + TEC TEC MGP_C57BL6NJ_T0061416.1 MGP_C57BL6NJ_G0027671.1 mouse_genomes_project 3 61102793 61115307 + Aadac protein_coding processed_transcript MGP_C57BL6NJ_T0061417.1 MGP_C57BL6NJ_G0027671.1 mouse_genomes_project 3 61108708 61116963 + MGP_C57BL6NJ_P0061417 Aadac protein_coding protein_coding MGP_C57BL6NJ_T0061418.1 MGP_C57BL6NJ_G0027671.1 mouse_genomes_project 3 61108823 61112887 + Aadac protein_coding retained_intron MGP_C57BL6NJ_T0014430.1 MGP_C57BL6NJ_G0012475.1 mouse_genomes_project 3 67572180 67574772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001246.1 MGP_C57BL6NJ_G0001149.1 mouse_genomes_project 3 16509557 16514387 + TEC TEC MGP_C57BL6NJ_T0064264.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140190316 140217845 - MGP_C57BL6NJ_P0064264 Aimp1 protein_coding protein_coding MGP_C57BL6NJ_T0064265.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140205895 140208888 - Aimp1 protein_coding retained_intron MGP_C57BL6NJ_T0064266.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140206158 140211200 - Aimp1 protein_coding retained_intron MGP_C57BL6NJ_T0064267.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140208117 140218331 - MGP_C57BL6NJ_P0064267 Aimp1 protein_coding protein_coding MGP_C57BL6NJ_T0064268.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140208207 140218083 - MGP_C57BL6NJ_P0064268 Aimp1 protein_coding protein_coding MGP_C57BL6NJ_T0064269.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140208223 140217798 - MGP_C57BL6NJ_P0064269 Aimp1 protein_coding protein_coding MGP_C57BL6NJ_T0064270.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140208918 140218085 - MGP_C57BL6NJ_P0064270 Aimp1 protein_coding protein_coding MGP_C57BL6NJ_T0064271.1 MGP_C57BL6NJ_G0028306.1 mouse_genomes_project 3 140213839 140217797 - Aimp1 protein_coding retained_intron MGP_C57BL6NJ_T0001349.1 MGP_C57BL6NJ_G0001250.1 mouse_genomes_project 3 56359715 56362068 + TEC TEC MGP_C57BL6NJ_T0099391.1 MGP_C57BL6NJ_G0037448.1 mouse_genomes_project 3 105344955 105347652 + Gm42868 sense_intronic sense_intronic MGP_C57BL6NJ_T0061664.1 MGP_C57BL6NJ_G0027728.1 mouse_genomes_project 3 78545093 79252953 + MGP_C57BL6NJ_P0061664 Fstl5 protein_coding protein_coding MGP_C57BL6NJ_T0061665.1 MGP_C57BL6NJ_G0027728.1 mouse_genomes_project 3 78545382 79062182 + Fstl5 protein_coding processed_transcript MGP_C57BL6NJ_T0061666.1 MGP_C57BL6NJ_G0027728.1 mouse_genomes_project 3 78546406 79251570 + MGP_C57BL6NJ_P0061666 Fstl5 protein_coding protein_coding MGP_C57BL6NJ_T0061667.1 MGP_C57BL6NJ_G0027728.1 mouse_genomes_project 3 79117076 79120384 + Fstl5 protein_coding retained_intron MGP_C57BL6NJ_T0061668.1 MGP_C57BL6NJ_G0027728.1 mouse_genomes_project 3 79125376 79250483 + MGP_C57BL6NJ_P0061668 Fstl5 protein_coding protein_coding MGP_C57BL6NJ_T0014415.1 MGP_C57BL6NJ_G0012460.1 mouse_genomes_project 3 62070376 62070755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007846.1 MGP_C57BL6NJ_G0006418.1 mouse_genomes_project 3 123584289 123584978 + Gm42891 lincRNA lincRNA MGP_C57BL6NJ_T0014609.1 MGP_C57BL6NJ_G0012654.1 mouse_genomes_project 3 119661657 119662264 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014219.1 MGP_C57BL6NJ_G0012264.1 mouse_genomes_project 3 957198 957972 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014350.1 MGP_C57BL6NJ_G0012395.1 mouse_genomes_project 3 42261576 42262063 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062087.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92048830 92056790 + MGP_C57BL6NJ_P0062087 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0062088.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92048893 92052900 + MGP_C57BL6NJ_P0062088 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0062089.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92052524 92061935 + MGP_C57BL6NJ_P0062089 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0062090.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92052557 92061535 + MGP_C57BL6NJ_P0062090 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0062091.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92052583 92061549 + MGP_C57BL6NJ_P0062091 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0062092.1 MGP_C57BL6NJ_G0027822.1 mouse_genomes_project 3 92052587 92061935 + MGP_C57BL6NJ_P0062092 Ssr2 protein_coding protein_coding MGP_C57BL6NJ_T0007740.1 MGP_C57BL6NJ_G0006335.1 mouse_genomes_project 3 70506202 70507800 + Gm35584 lincRNA lincRNA MGP_C57BL6NJ_T0062596.1 MGP_C57BL6NJ_G0027936.1 mouse_genomes_project 3 96837447 96841621 - MGP_C57BL6NJ_P0062596 Kprp protein_coding protein_coding MGP_C57BL6NJ_T0010788.1 MGP_C57BL6NJ_G0008873.1 mouse_genomes_project 3 134727573 134727647 + Mir302b miRNA miRNA MGP_C57BL6NJ_T0100302.1 MGP_C57BL6NJ_G0038348.1 mouse_genomes_project 3 115622075 115622181 + Gm25681 snRNA snRNA MGP_C57BL6NJ_T0061554.1 MGP_C57BL6NJ_G0027700.1 mouse_genomes_project 3 69104040 69109969 - MGP_C57BL6NJ_P0061554 Lxn protein_coding protein_coding MGP_C57BL6NJ_T0061555.1 MGP_C57BL6NJ_G0027700.1 mouse_genomes_project 3 69104043 69107677 - Lxn protein_coding retained_intron MGP_C57BL6NJ_T0061556.1 MGP_C57BL6NJ_G0027700.1 mouse_genomes_project 3 69107103 69109825 - Lxn protein_coding retained_intron MGP_C57BL6NJ_T0007624.1 MGP_C57BL6NJ_G0006251.1 mouse_genomes_project 3 11291531 11292912 - Gm2464 lincRNA lincRNA MGP_C57BL6NJ_T0014493.1 MGP_C57BL6NJ_G0012538.1 mouse_genomes_project 3 87627823 87628379 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100309.1 MGP_C57BL6NJ_G0038355.1 mouse_genomes_project 3 131330470 131330580 + Gm22575 snRNA snRNA MGP_C57BL6NJ_T0063741.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115068810 115437015 + MGP_C57BL6NJ_P0063741 Vav3 protein_coding protein_coding MGP_C57BL6NJ_T0063742.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115068840 115313463 + Vav3 protein_coding retained_intron MGP_C57BL6NJ_T0063743.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115069263 115180765 + Vav3 protein_coding processed_transcript MGP_C57BL6NJ_T0063744.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115238339 115247252 + Vav3 protein_coding processed_transcript MGP_C57BL6NJ_T0063745.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115323779 115437011 + MGP_C57BL6NJ_P0063745 Vav3 protein_coding protein_coding MGP_C57BL6NJ_T0063746.1 MGP_C57BL6NJ_G0028210.1 mouse_genomes_project 3 115392642 115434220 + Vav3 protein_coding processed_transcript MGP_C57BL6NJ_T0007882.1 MGP_C57BL6NJ_G0006445.1 mouse_genomes_project 3 140851441 140853932 - Gm43254 lincRNA lincRNA MGP_C57BL6NJ_T0014464.1 MGP_C57BL6NJ_G0012509.1 mouse_genomes_project 3 74000414 74000573 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007729.1 MGP_C57BL6NJ_G0006326.1 mouse_genomes_project 3 59039206 59087525 + 4921539H07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007731.1 MGP_C57BL6NJ_G0006326.1 mouse_genomes_project 3 59086383 59090068 + 4921539H07Rik lincRNA lincRNA MGP_C57BL6NJ_T0018418.1 MGP_C57BL6NJ_G0015897.1 mouse_genomes_project 3 52052732 52059810 + 5031434O11Rik processed_transcript antisense MGP_C57BL6NJ_T0018419.1 MGP_C57BL6NJ_G0015897.1 mouse_genomes_project 3 52055168 52059798 + 5031434O11Rik processed_transcript antisense MGP_C57BL6NJ_T0018420.1 MGP_C57BL6NJ_G0015897.1 mouse_genomes_project 3 52056338 52059804 + 5031434O11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0100254.1 MGP_C57BL6NJ_G0038300.1 mouse_genomes_project 3 56333113 56333220 + Gm25404 snRNA snRNA MGP_C57BL6NJ_T0063482.1 MGP_C57BL6NJ_G0028146.1 mouse_genomes_project 3 111588165 111663441 - MGP_C57BL6NJ_P0063482 Chil3 protein_coding protein_coding MGP_C57BL6NJ_T0063483.1 MGP_C57BL6NJ_G0028146.1 mouse_genomes_project 3 111589208 111591561 - MGP_C57BL6NJ_P0063483 Chil3 protein_coding protein_coding MGP_C57BL6NJ_T0063484.1 MGP_C57BL6NJ_G0028146.1 mouse_genomes_project 3 111599006 111603940 - Chil3 protein_coding retained_intron MGP_C57BL6NJ_T0014227.1 MGP_C57BL6NJ_G0012272.1 mouse_genomes_project 3 1689229 1689439 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001411.1 MGP_C57BL6NJ_G0001312.1 mouse_genomes_project 3 109991884 109998048 + TEC TEC MGP_C57BL6NJ_T0062601.1 MGP_C57BL6NJ_G0027941.1 mouse_genomes_project 3 96982202 96984038 + MGP_C57BL6NJ_P0062601 Lce3c protein_coding protein_coding MGP_C57BL6NJ_T0064628.1 MGP_C57BL6NJ_G0028376.1 mouse_genomes_project 3 154284285 154416095 + MGP_C57BL6NJ_P0064628 Ddah1 protein_coding protein_coding MGP_C57BL6NJ_T0064629.1 MGP_C57BL6NJ_G0028376.1 mouse_genomes_project 3 154339754 154411216 + Ddah1 protein_coding processed_transcript MGP_C57BL6NJ_T0014517.1 MGP_C57BL6NJ_G0012562.1 mouse_genomes_project 3 96303345 96303646 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064781.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161236074 161265645 - MGP_C57BL6NJ_P0064781 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064782.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161236074 161266196 - MGP_C57BL6NJ_P0064782 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064783.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161237460 161255208 - MGP_C57BL6NJ_P0064783 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064784.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161237508 161248163 - MGP_C57BL6NJ_P0064784 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064785.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161237549 161255208 - MGP_C57BL6NJ_P0064785 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064786.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161238150 161244724 - Nexn protein_coding processed_transcript MGP_C57BL6NJ_T0064787.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161242638 161244035 - Nexn protein_coding retained_intron MGP_C57BL6NJ_T0064788.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161243854 161265646 - MGP_C57BL6NJ_P0064788 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064789.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161243910 161255262 - MGP_C57BL6NJ_P0064789 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064790.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161247919 161248363 - Nexn protein_coding retained_intron MGP_C57BL6NJ_T0064791.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161247930 161265673 - MGP_C57BL6NJ_P0064791 Nexn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064792.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161247961 161263384 - MGP_C57BL6NJ_P0064792 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064793.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161247979 161261413 - MGP_C57BL6NJ_P0064793 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064794.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161248081 161262408 - MGP_C57BL6NJ_P0064794 Nexn protein_coding protein_coding MGP_C57BL6NJ_T0064795.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161252415 161266228 - Nexn protein_coding retained_intron MGP_C57BL6NJ_T0064796.1 MGP_C57BL6NJ_G0028403.1 mouse_genomes_project 3 161252628 161252997 - Nexn protein_coding retained_intron MGP_C57BL6NJ_T0004479.1 MGP_C57BL6NJ_G0003918.1 mouse_genomes_project 3 110293957 110303847 + Gm42956 antisense antisense MGP_C57BL6NJ_T0064901.1 MGP_C57BL6NJ_G0028419.1 mouse_genomes_project 3 163851759 163962145 + MGP_C57BL6NJ_P0064901 protein_coding protein_coding MGP_C57BL6NJ_T0064902.1 MGP_C57BL6NJ_G0028419.1 mouse_genomes_project 3 163902040 163943363 + MGP_C57BL6NJ_P0064902 protein_coding protein_coding MGP_C57BL6NJ_T0064903.1 MGP_C57BL6NJ_G0028419.1 mouse_genomes_project 3 163902797 163906441 + protein_coding processed_transcript MGP_C57BL6NJ_T0064904.1 MGP_C57BL6NJ_G0028419.1 mouse_genomes_project 3 163958680 163962144 + MGP_C57BL6NJ_P0064904 protein_coding protein_coding MGP_C57BL6NJ_T0007862.1 MGP_C57BL6NJ_G0006427.1 mouse_genomes_project 3 131150480 131231524 + Gm43731 lincRNA lincRNA MGP_C57BL6NJ_T0063593.1 MGP_C57BL6NJ_G0028176.1 mouse_genomes_project 3 113579858 113585446 - MGP_C57BL6NJ_P0063593 Gstm3 protein_coding protein_coding MGP_C57BL6NJ_T0061904.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91095119 91119170 - MGP_C57BL6NJ_P0061904 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061905.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096326 91119175 - MGP_C57BL6NJ_P0061905 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061906.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096326 91177837 - MGP_C57BL6NJ_P0061906 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061907.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096326 91177786 - MGP_C57BL6NJ_P0061907 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061908.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096327 91110213 - Pear1 protein_coding retained_intron MGP_C57BL6NJ_T0061909.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096327 91119171 - MGP_C57BL6NJ_P0061909 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061910.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096327 91119165 - MGP_C57BL6NJ_P0061910 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061911.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91096335 91101425 - Pear1 protein_coding retained_intron MGP_C57BL6NJ_T0061912.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91097129 91119165 - MGP_C57BL6NJ_P0061912 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061913.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91098565 91101054 - MGP_C57BL6NJ_P0061913 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061914.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91099546 91104073 - MGP_C57BL6NJ_P0061914 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061915.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91103771 91119165 - MGP_C57BL6NJ_P0061915 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061916.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91105080 91119177 - Pear1 protein_coding retained_intron MGP_C57BL6NJ_T0061917.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91105520 91119165 - MGP_C57BL6NJ_P0061917 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061918.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91105533 91119165 - MGP_C57BL6NJ_P0061918 Pear1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061919.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91105547 91119188 - MGP_C57BL6NJ_P0061919 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061920.1 MGP_C57BL6NJ_G0027786.1 mouse_genomes_project 3 91106281 91119157 - MGP_C57BL6NJ_P0061920 Pear1 protein_coding protein_coding MGP_C57BL6NJ_T0061729.1 MGP_C57BL6NJ_G0027741.1 mouse_genomes_project 3 84833065 84858414 + MGP_C57BL6NJ_P0061729 Ctso protein_coding protein_coding MGP_C57BL6NJ_T0061730.1 MGP_C57BL6NJ_G0027741.1 mouse_genomes_project 3 84833087 84833790 + Ctso protein_coding retained_intron MGP_C57BL6NJ_T0061731.1 MGP_C57BL6NJ_G0027741.1 mouse_genomes_project 3 84833107 84843466 + Ctso protein_coding processed_transcript MGP_C57BL6NJ_T0061732.1 MGP_C57BL6NJ_G0027741.1 mouse_genomes_project 3 84852625 84855989 + Ctso protein_coding retained_intron MGP_C57BL6NJ_T0011795.1 MGP_C57BL6NJ_G0009880.1 mouse_genomes_project 3 29590169 29590581 - 1600017P15Rik misc_RNA misc_RNA MGP_C57BL6NJ_T0014534.1 MGP_C57BL6NJ_G0012579.1 mouse_genomes_project 3 99637059 99637253 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061832.1 MGP_C57BL6NJ_G0027768.1 mouse_genomes_project 3 88849098 88863025 - Fam160a1 protein_coding retained_intron MGP_C57BL6NJ_T0061833.1 MGP_C57BL6NJ_G0027768.1 mouse_genomes_project 3 88849100 89019922 - MGP_C57BL6NJ_P0061833 Fam160a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061834.1 MGP_C57BL6NJ_G0027768.1 mouse_genomes_project 3 88849100 88940197 - MGP_C57BL6NJ_P0061834 Fam160a1 protein_coding protein_coding MGP_C57BL6NJ_T0061835.1 MGP_C57BL6NJ_G0027768.1 mouse_genomes_project 3 88849102 88934298 - MGP_C57BL6NJ_P0061835 Fam160a1 protein_coding protein_coding MGP_C57BL6NJ_T0007911.1 MGP_C57BL6NJ_G0006471.1 mouse_genomes_project 3 151690213 151693420 + Gm43612 lincRNA lincRNA MGP_C57BL6NJ_T0061766.1 MGP_C57BL6NJ_G0027753.1 mouse_genomes_project 3 85997071 86013653 + MGP_C57BL6NJ_P0061766 Plrg1 protein_coding protein_coding MGP_C57BL6NJ_T0061767.1 MGP_C57BL6NJ_G0027753.1 mouse_genomes_project 3 85997081 86013587 + MGP_C57BL6NJ_P0061767 Plrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061768.1 MGP_C57BL6NJ_G0027753.1 mouse_genomes_project 3 85997104 86013470 + MGP_C57BL6NJ_P0061768 Plrg1 protein_coding protein_coding MGP_C57BL6NJ_T0061769.1 MGP_C57BL6NJ_G0027753.1 mouse_genomes_project 3 86009341 86010363 + Plrg1 protein_coding retained_intron MGP_C57BL6NJ_T0061770.1 MGP_C57BL6NJ_G0027753.1 mouse_genomes_project 3 86010270 86011462 + Plrg1 protein_coding retained_intron MGP_C57BL6NJ_T0004531.1 MGP_C57BL6NJ_G0003951.1 mouse_genomes_project 3 141094946 141133581 + Gm42567 antisense antisense MGP_C57BL6NJ_T0007728.1 MGP_C57BL6NJ_G0006325.1 mouse_genomes_project 3 58855960 58860531 - Gm42512 lincRNA lincRNA MGP_C57BL6NJ_T0007863.1 MGP_C57BL6NJ_G0006428.1 mouse_genomes_project 3 131797322 131905684 + Gm42825 lincRNA lincRNA MGP_C57BL6NJ_T0007699.1 MGP_C57BL6NJ_G0006305.1 mouse_genomes_project 3 41118355 41122808 - Platr4 lincRNA lincRNA MGP_C57BL6NJ_T0007700.1 MGP_C57BL6NJ_G0006305.1 mouse_genomes_project 3 41122010 41127522 - Platr4 lincRNA lincRNA MGP_C57BL6NJ_T0007701.1 MGP_C57BL6NJ_G0006305.1 mouse_genomes_project 3 41123135 41127524 - Platr4 lincRNA lincRNA MGP_C57BL6NJ_T0063522.1 MGP_C57BL6NJ_G0028154.1 mouse_genomes_project 3 112335076 112336103 - MGP_C57BL6NJ_P0063522 Olfr266 protein_coding protein_coding MGP_C57BL6NJ_T0064052.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132420299 132768321 + MGP_C57BL6NJ_P0064052 Ndst4 protein_coding protein_coding MGP_C57BL6NJ_T0064053.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132420313 132726066 + Ndst4 protein_coding retained_intron MGP_C57BL6NJ_T0064054.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132593600 132649202 + MGP_C57BL6NJ_P0064054 Ndst4 protein_coding protein_coding MGP_C57BL6NJ_T0064055.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132720408 132767761 + MGP_C57BL6NJ_P0064055 Ndst4 protein_coding protein_coding MGP_C57BL6NJ_T0064056.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132720418 132730360 + Ndst4 protein_coding processed_transcript MGP_C57BL6NJ_T0064057.1 MGP_C57BL6NJ_G0028271.1 mouse_genomes_project 3 132749509 132764124 + MGP_C57BL6NJ_P0064057 Ndst4 protein_coding protein_coding MGP_C57BL6NJ_T0001399.1 MGP_C57BL6NJ_G0001300.1 mouse_genomes_project 3 100282556 100285036 + TEC TEC MGP_C57BL6NJ_T0007654.1 MGP_C57BL6NJ_G0006271.1 mouse_genomes_project 3 27653914 27656139 - Gm37867 lincRNA lincRNA MGP_C57BL6NJ_T0001365.1 MGP_C57BL6NJ_G0001266.1 mouse_genomes_project 3 67243705 67248088 + TEC TEC MGP_C57BL6NJ_T0001515.1 MGP_C57BL6NJ_G0001415.1 mouse_genomes_project 3 161384089 161386401 - TEC TEC MGP_C57BL6NJ_T0001508.1 MGP_C57BL6NJ_G0001408.1 mouse_genomes_project 3 157135137 157136008 + TEC TEC MGP_C57BL6NJ_T0018473.1 MGP_C57BL6NJ_G0015917.1 mouse_genomes_project 3 130374771 130375624 - Snhg8 processed_transcript lincRNA MGP_C57BL6NJ_T0018474.1 MGP_C57BL6NJ_G0015917.1 mouse_genomes_project 3 130374774 130375550 - Snhg8 processed_transcript retained_intron MGP_C57BL6NJ_T0018475.1 MGP_C57BL6NJ_G0015917.1 mouse_genomes_project 3 130374776 130375553 - Snhg8 processed_transcript lincRNA MGP_C57BL6NJ_T0014294.1 MGP_C57BL6NJ_G0012339.1 mouse_genomes_project 3 20414008 20414441 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060898.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35139770 35141676 + Atp11b protein_coding retained_intron MGP_C57BL6NJ_T0060899.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35139798 35216587 + Atp11b protein_coding processed_transcript MGP_C57BL6NJ_T0060900.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35139798 35244160 + Atp11b protein_coding retained_intron MGP_C57BL6NJ_T0060901.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35139798 35244165 + MGP_C57BL6NJ_P0060901 Atp11b protein_coding protein_coding MGP_C57BL6NJ_T0060902.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35175012 35193866 + MGP_C57BL6NJ_P0060902 Atp11b protein_coding protein_coding MGP_C57BL6NJ_T0060903.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35176503 35244163 + MGP_C57BL6NJ_P0060903 Atp11b protein_coding protein_coding MGP_C57BL6NJ_T0060904.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35194739 35197179 + Atp11b protein_coding processed_transcript MGP_C57BL6NJ_T0060905.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35213948 35216088 + Atp11b protein_coding retained_intron MGP_C57BL6NJ_T0060906.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35218264 35244171 + MGP_C57BL6NJ_P0060906 Atp11b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060907.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35225611 35244160 + Atp11b protein_coding retained_intron MGP_C57BL6NJ_T0060908.1 MGP_C57BL6NJ_G0027569.1 mouse_genomes_project 3 35225944 35244165 + MGP_C57BL6NJ_P0060908 Atp11b protein_coding protein_coding MGP_C57BL6NJ_T0007804.1 MGP_C57BL6NJ_G0006382.1 mouse_genomes_project 3 100854765 100895199 + lincRNA lincRNA MGP_C57BL6NJ_T0100325.1 MGP_C57BL6NJ_G0038371.1 mouse_genomes_project 3 166763627 166763734 + Gm22458 snRNA snRNA MGP_C57BL6NJ_T0103064.1 MGP_C57BL6NJ_G0040858.1 mouse_genomes_project 3 666525 666953 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0064918.1 MGP_C57BL6NJ_G0028423.1 mouse_genomes_project 3 165890079 166708329 + MGP_C57BL6NJ_P0064918 Negr1 protein_coding protein_coding MGP_C57BL6NJ_T0064919.1 MGP_C57BL6NJ_G0028423.1 mouse_genomes_project 3 165890244 166552828 + MGP_C57BL6NJ_P0064919 Negr1 protein_coding protein_coding MGP_C57BL6NJ_T0064920.1 MGP_C57BL6NJ_G0028423.1 mouse_genomes_project 3 165890254 166581118 + MGP_C57BL6NJ_P0064920 Negr1 protein_coding protein_coding MGP_C57BL6NJ_T0064921.1 MGP_C57BL6NJ_G0028423.1 mouse_genomes_project 3 165890431 165894419 + Negr1 protein_coding retained_intron MGP_C57BL6NJ_T0064922.1 MGP_C57BL6NJ_G0028423.1 mouse_genomes_project 3 165890435 166384119 + MGP_C57BL6NJ_P0064922 Negr1 protein_coding protein_coding MGP_C57BL6NJ_T0007956.1 MGP_C57BL6NJ_G0006504.1 mouse_genomes_project 3 165263570 165297148 + 9330178D15Rik lincRNA lincRNA MGP_C57BL6NJ_T0061032.1 MGP_C57BL6NJ_G0027591.1 mouse_genomes_project 3 37142038 37146689 + MGP_C57BL6NJ_P0061032 Spry1 protein_coding protein_coding MGP_C57BL6NJ_T0061033.1 MGP_C57BL6NJ_G0027591.1 mouse_genomes_project 3 37142049 37146689 + MGP_C57BL6NJ_P0061033 Spry1 protein_coding protein_coding MGP_C57BL6NJ_T0061034.1 MGP_C57BL6NJ_G0027591.1 mouse_genomes_project 3 37142171 37146689 + MGP_C57BL6NJ_P0061034 Spry1 protein_coding protein_coding MGP_C57BL6NJ_T0060794.1 MGP_C57BL6NJ_G0027551.1 mouse_genomes_project 3 30257923 30374642 - MGP_C57BL6NJ_P0060794 Slc7a14 protein_coding protein_coding MGP_C57BL6NJ_T0060795.1 MGP_C57BL6NJ_G0027551.1 mouse_genomes_project 3 30281196 30318370 - MGP_C57BL6NJ_P0060795 Slc7a14 protein_coding protein_coding MGP_C57BL6NJ_T0014711.1 MGP_C57BL6NJ_G0012756.1 mouse_genomes_project 3 154264150 154264590 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101598.1 MGP_C57BL6NJ_G0039644.1 mouse_genomes_project 3 101175983 101176119 - Gm22581 snoRNA snoRNA MGP_C57BL6NJ_T0061930.1 MGP_C57BL6NJ_G0027791.1 mouse_genomes_project 3 91278900 91288450 + MGP_C57BL6NJ_P0061930 Hdgf protein_coding protein_coding MGP_C57BL6NJ_T0061931.1 MGP_C57BL6NJ_G0027791.1 mouse_genomes_project 3 91279367 91286965 + MGP_C57BL6NJ_P0061931 Hdgf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061932.1 MGP_C57BL6NJ_G0027791.1 mouse_genomes_project 3 91279849 91286482 + Hdgf protein_coding processed_transcript MGP_C57BL6NJ_T0061933.1 MGP_C57BL6NJ_G0027791.1 mouse_genomes_project 3 91282349 91286498 + Hdgf protein_coding processed_transcript MGP_C57BL6NJ_T0061934.1 MGP_C57BL6NJ_G0027791.1 mouse_genomes_project 3 91286276 91287093 + Hdgf protein_coding retained_intron MGP_C57BL6NJ_T0060762.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868355 29895036 + Gpr160 protein_coding retained_intron MGP_C57BL6NJ_T0060763.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868355 29915706 + MGP_C57BL6NJ_P0060763 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060764.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868355 29915706 + MGP_C57BL6NJ_P0060764 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060765.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868355 29915708 + MGP_C57BL6NJ_P0060765 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060766.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868443 29915706 + MGP_C57BL6NJ_P0060766 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060767.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868447 29914308 + MGP_C57BL6NJ_P0060767 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060768.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868469 29915706 + MGP_C57BL6NJ_P0060768 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0060769.1 MGP_C57BL6NJ_G0027546.1 mouse_genomes_project 3 29868597 29914337 + MGP_C57BL6NJ_P0060769 Gpr160 protein_coding protein_coding MGP_C57BL6NJ_T0061447.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63610404 63733369 + MGP_C57BL6NJ_P0061447 Arhgef26 protein_coding protein_coding MGP_C57BL6NJ_T0061448.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63611059 63643882 + Arhgef26 protein_coding processed_transcript MGP_C57BL6NJ_T0061449.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63612450 63642277 + Arhgef26 protein_coding retained_intron MGP_C57BL6NJ_T0061450.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63613161 63645154 + Arhgef26 protein_coding processed_transcript MGP_C57BL6NJ_T0061451.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63690892 63731360 + MGP_C57BL6NJ_P0061451 Arhgef26 protein_coding protein_coding MGP_C57BL6NJ_T0061452.1 MGP_C57BL6NJ_G0027677.1 mouse_genomes_project 3 63698395 63701227 + Arhgef26 protein_coding retained_intron MGP_C57BL6NJ_T0004438.1 MGP_C57BL6NJ_G0003891.1 mouse_genomes_project 3 94173616 94179107 + Gm16048 antisense antisense MGP_C57BL6NJ_T0064707.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155433907 155531533 + Ttll7 protein_coding retained_intron MGP_C57BL6NJ_T0064708.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155433907 155574123 + MGP_C57BL6NJ_P0064708 Ttll7 protein_coding protein_coding MGP_C57BL6NJ_T0064709.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155433907 155575425 + MGP_C57BL6NJ_P0064709 Ttll7 protein_coding protein_coding MGP_C57BL6NJ_T0064710.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155478718 155571124 + MGP_C57BL6NJ_P0064710 Ttll7 protein_coding protein_coding MGP_C57BL6NJ_T0064711.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155481198 155483049 + MGP_C57BL6NJ_P0064711 Ttll7 protein_coding protein_coding MGP_C57BL6NJ_T0064712.1 MGP_C57BL6NJ_G0028394.1 mouse_genomes_project 3 155535175 155573293 + Ttll7 protein_coding retained_intron MGP_C57BL6NJ_T0001278.1 MGP_C57BL6NJ_G0001181.1 mouse_genomes_project 3 33954842 33954956 + TEC TEC MGP_C57BL6NJ_T0062562.1 MGP_C57BL6NJ_G0027906.1 mouse_genomes_project 3 96094447 96102244 - MGP_C57BL6NJ_P0062562 Lelp1 protein_coding protein_coding MGP_C57BL6NJ_T0061459.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64555245 64646858 + MGP_C57BL6NJ_P0061459 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061460.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64614291 64647227 + MGP_C57BL6NJ_P0061460 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061461.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64614473 64647219 + MGP_C57BL6NJ_P0061461 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061462.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64614586 64703539 + MGP_C57BL6NJ_P0061462 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061463.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64614897 64708506 + MGP_C57BL6NJ_P0061463 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061464.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64615120 64704066 + MGP_C57BL6NJ_P0061464 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061465.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64616077 64647099 + MGP_C57BL6NJ_P0061465 Mme protein_coding protein_coding MGP_C57BL6NJ_T0061466.1 MGP_C57BL6NJ_G0027680.1 mouse_genomes_project 3 64619185 64665428 + Mme protein_coding retained_intron MGP_C57BL6NJ_T0007885.1 MGP_C57BL6NJ_G0006448.1 mouse_genomes_project 3 141384890 141395007 - lincRNA lincRNA MGP_C57BL6NJ_T0007647.1 MGP_C57BL6NJ_G0006264.1 mouse_genomes_project 3 20390563 20391354 - Gm43674 lincRNA lincRNA MGP_C57BL6NJ_T0007629.1 MGP_C57BL6NJ_G0006253.1 mouse_genomes_project 3 11292988 11295679 - Gm2464 lincRNA lincRNA MGP_C57BL6NJ_T0099385.1 MGP_C57BL6NJ_G0037442.1 mouse_genomes_project 3 98704421 98706583 - Gm43773 sense_intronic sense_intronic MGP_C57BL6NJ_T0063950.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128665080 128686209 + MGP_C57BL6NJ_P0063950 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063951.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128665768 128731176 + MGP_C57BL6NJ_P0063951 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063952.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128665769 128702149 + MGP_C57BL6NJ_P0063952 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063953.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128680108 128706015 + MGP_C57BL6NJ_P0063953 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063954.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128680108 128724337 + MGP_C57BL6NJ_P0063954 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063955.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128680204 128729398 + MGP_C57BL6NJ_P0063955 Arhgap29 protein_coding protein_coding MGP_C57BL6NJ_T0063956.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128694782 128706110 + Arhgap29 protein_coding retained_intron MGP_C57BL6NJ_T0063957.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128702101 128705784 + Arhgap29 protein_coding retained_intron MGP_C57BL6NJ_T0063958.1 MGP_C57BL6NJ_G0028251.1 mouse_genomes_project 3 128716206 128720221 + Arhgap29 protein_coding retained_intron MGP_C57BL6NJ_T0101620.1 MGP_C57BL6NJ_G0039666.1 mouse_genomes_project 3 151075923 151076016 + Gm25965 snoRNA snoRNA MGP_C57BL6NJ_T0063045.1 MGP_C57BL6NJ_G0028046.1 mouse_genomes_project 3 101117861 101139855 + MGP_C57BL6NJ_P0063045 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063046.1 MGP_C57BL6NJ_G0028046.1 mouse_genomes_project 3 101117945 101139885 + MGP_C57BL6NJ_P0063046 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063047.1 MGP_C57BL6NJ_G0028046.1 mouse_genomes_project 3 101128939 101132048 + protein_coding processed_transcript MGP_C57BL6NJ_T0014481.1 MGP_C57BL6NJ_G0012526.1 mouse_genomes_project 3 80758940 80759890 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064839.1 MGP_C57BL6NJ_G0028409.1 mouse_genomes_project 3 161847833 162020352 - MGP_C57BL6NJ_P0064839 St6galnac5 protein_coding protein_coding MGP_C57BL6NJ_T0064840.1 MGP_C57BL6NJ_G0028409.1 mouse_genomes_project 3 162013481 162020158 - St6galnac5 protein_coding processed_transcript MGP_C57BL6NJ_T0061201.1 MGP_C57BL6NJ_G0027620.1 mouse_genomes_project 3 52811439 52897060 + MGP_C57BL6NJ_P0061201 Foxo1 protein_coding protein_coding MGP_C57BL6NJ_T0014721.1 MGP_C57BL6NJ_G0012766.1 mouse_genomes_project 3 161145511 161146516 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064313.1 MGP_C57BL6NJ_G0028314.1 mouse_genomes_project 3 141837621 141862379 + protein_coding processed_transcript MGP_C57BL6NJ_T0064314.1 MGP_C57BL6NJ_G0028314.1 mouse_genomes_project 3 141837628 141864920 + MGP_C57BL6NJ_P0064314 protein_coding protein_coding MGP_C57BL6NJ_T0064315.1 MGP_C57BL6NJ_G0028314.1 mouse_genomes_project 3 141837632 141839523 + protein_coding retained_intron MGP_C57BL6NJ_T0064316.1 MGP_C57BL6NJ_G0028314.1 mouse_genomes_project 3 141837957 141860990 + MGP_C57BL6NJ_P0064316 protein_coding protein_coding MGP_C57BL6NJ_T0064317.1 MGP_C57BL6NJ_G0028314.1 mouse_genomes_project 3 141842819 141849147 + protein_coding retained_intron MGP_C57BL6NJ_T0007748.1 MGP_C57BL6NJ_G0006342.1 mouse_genomes_project 3 78093296 78102566 - Platr10 lincRNA lincRNA MGP_C57BL6NJ_T0007749.1 MGP_C57BL6NJ_G0006342.1 mouse_genomes_project 3 78093690 78094497 - Platr10 lincRNA lincRNA MGP_C57BL6NJ_T0061303.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56028276 56323736 + MGP_C57BL6NJ_P0061303 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061304.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56028438 56254197 + MGP_C57BL6NJ_P0061304 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061305.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56028438 56323732 + MGP_C57BL6NJ_P0061305 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061306.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56032988 56042339 + MGP_C57BL6NJ_P0061306 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061307.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56033196 56042309 + Dclk1 protein_coding retained_intron MGP_C57BL6NJ_T0061308.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56137402 56260788 + Dclk1 protein_coding processed_transcript MGP_C57BL6NJ_T0061309.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56233911 56263421 + Dclk1 protein_coding retained_intron MGP_C57BL6NJ_T0061310.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244604 56254199 + MGP_C57BL6NJ_P0061310 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061311.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244634 56323732 + MGP_C57BL6NJ_P0061311 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061312.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244775 56321221 + MGP_C57BL6NJ_P0061312 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061313.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244792 56319804 + MGP_C57BL6NJ_P0061313 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061314.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244792 56321220 + MGP_C57BL6NJ_P0061314 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061315.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244792 56301869 + MGP_C57BL6NJ_P0061315 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061316.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56244848 56306951 + MGP_C57BL6NJ_P0061316 Dclk1 protein_coding protein_coding MGP_C57BL6NJ_T0061318.1 MGP_C57BL6NJ_G0027642.1 mouse_genomes_project 3 56312547 56318981 + Dclk1 protein_coding processed_transcript MGP_C57BL6NJ_T0007686.1 MGP_C57BL6NJ_G0006297.1 mouse_genomes_project 3 37904941 37909180 + Gm42920 lincRNA lincRNA MGP_C57BL6NJ_T0007814.1 MGP_C57BL6NJ_G0006392.1 mouse_genomes_project 3 107282740 107283337 + Gm43241 lincRNA lincRNA MGP_C57BL6NJ_T0103106.1 MGP_C57BL6NJ_G0040900.1 mouse_genomes_project 3 98420296 98422211 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018444.1 MGP_C57BL6NJ_G0015908.1 mouse_genomes_project 3 110040048 110060656 - Gm43584 processed_transcript processed_transcript MGP_C57BL6NJ_T0001522.1 MGP_C57BL6NJ_G0001422.1 mouse_genomes_project 3 163280953 163283202 + TEC TEC MGP_C57BL6NJ_T0062262.1 MGP_C57BL6NJ_G0027845.1 mouse_genomes_project 3 92836180 92837408 + Krtcap2 protein_coding retained_intron MGP_C57BL6NJ_T0062263.1 MGP_C57BL6NJ_G0027845.1 mouse_genomes_project 3 92836552 92839946 + MGP_C57BL6NJ_P0062263 Krtcap2 protein_coding protein_coding MGP_C57BL6NJ_T0062264.1 MGP_C57BL6NJ_G0027845.1 mouse_genomes_project 3 92836648 92839924 + MGP_C57BL6NJ_P0062264 Krtcap2 protein_coding protein_coding MGP_C57BL6NJ_T0062265.1 MGP_C57BL6NJ_G0027845.1 mouse_genomes_project 3 92839081 92839937 + Krtcap2 protein_coding retained_intron MGP_C57BL6NJ_T0101619.1 MGP_C57BL6NJ_G0039665.1 mouse_genomes_project 3 141137845 141137977 - Gm23011 snoRNA snoRNA MGP_C57BL6NJ_T0064295.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140854033 140919358 + MGP_C57BL6NJ_P0064295 Ppa2 protein_coding protein_coding MGP_C57BL6NJ_T0064296.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140854045 140919515 + MGP_C57BL6NJ_P0064296 Ppa2 protein_coding protein_coding MGP_C57BL6NJ_T0064297.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140854405 140911725 + Ppa2 protein_coding processed_transcript MGP_C57BL6NJ_T0064298.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140865391 140870491 + Ppa2 protein_coding retained_intron MGP_C57BL6NJ_T0064299.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140882794 140909209 + Ppa2 protein_coding processed_transcript MGP_C57BL6NJ_T0064300.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140882967 140919362 + Ppa2 protein_coding retained_intron MGP_C57BL6NJ_T0064301.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140891996 140919347 + MGP_C57BL6NJ_P0064301 Ppa2 protein_coding protein_coding MGP_C57BL6NJ_T0064302.1 MGP_C57BL6NJ_G0028312.1 mouse_genomes_project 3 140913691 140915725 + Ppa2 protein_coding retained_intron MGP_C57BL6NJ_T0001342.1 MGP_C57BL6NJ_G0001243.1 mouse_genomes_project 3 53691444 53691900 + TEC TEC MGP_C57BL6NJ_T0061096.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41201878 41266123 + MGP_C57BL6NJ_P0061096 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061097.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41201888 41243065 + MGP_C57BL6NJ_P0061097 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061098.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41201907 41245904 + MGP_C57BL6NJ_P0061098 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061099.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41211919 41266118 + MGP_C57BL6NJ_P0061099 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061100.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41211961 41241018 + Jade1 protein_coding processed_transcript MGP_C57BL6NJ_T0061101.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41212157 41263339 + MGP_C57BL6NJ_P0061101 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061102.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41214142 41265393 + MGP_C57BL6NJ_P0061102 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061103.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41214182 41241016 + Jade1 protein_coding processed_transcript MGP_C57BL6NJ_T0061104.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41214204 41255976 + MGP_C57BL6NJ_P0061104 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061105.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41230139 41238287 + Jade1 protein_coding retained_intron MGP_C57BL6NJ_T0061106.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41240956 41249455 + Jade1 protein_coding retained_intron MGP_C57BL6NJ_T0061107.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41243056 41253845 + Jade1 protein_coding retained_intron MGP_C57BL6NJ_T0061108.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41245950 41254081 + MGP_C57BL6NJ_P0061108 Jade1 protein_coding protein_coding MGP_C57BL6NJ_T0061109.1 MGP_C57BL6NJ_G0027604.1 mouse_genomes_project 3 41251710 41254088 + Jade1 protein_coding processed_transcript MGP_C57BL6NJ_T0014689.1 MGP_C57BL6NJ_G0012734.1 mouse_genomes_project 3 146548742 146550063 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062569.1 MGP_C57BL6NJ_G0027912.1 mouse_genomes_project 3 96391535 96392816 + MGP_C57BL6NJ_P0062569 Sprr2i protein_coding protein_coding MGP_C57BL6NJ_T0103095.1 MGP_C57BL6NJ_G0040889.1 mouse_genomes_project 3 97944001 97945099 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014548.1 MGP_C57BL6NJ_G0012593.1 mouse_genomes_project 3 102916933 102917422 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062550.1 MGP_C57BL6NJ_G0027898.1 mouse_genomes_project 3 94412527 94413585 + MGP_C57BL6NJ_P0062550 S100a8 protein_coding protein_coding MGP_C57BL6NJ_T0062551.1 MGP_C57BL6NJ_G0027898.1 mouse_genomes_project 3 94412860 94413514 + S100a8 protein_coding retained_intron MGP_C57BL6NJ_T0061992.1 MGP_C57BL6NJ_G0027805.1 mouse_genomes_project 3 91642340 91690234 - MGP_C57BL6NJ_P0061992 Gm38392 protein_coding protein_coding MGP_C57BL6NJ_T0061993.1 MGP_C57BL6NJ_G0027805.1 mouse_genomes_project 3 91644155 91690234 - MGP_C57BL6NJ_P0061993 Gm38392 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062526.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94268087 94274832 + MGP_C57BL6NJ_P0062526 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062527.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94268148 94274698 + MGP_C57BL6NJ_P0062527 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062528.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94268158 94274419 + S100a16 protein_coding processed_transcript MGP_C57BL6NJ_T0062529.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94269718 94274611 + MGP_C57BL6NJ_P0062529 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062530.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94270971 94274113 + MGP_C57BL6NJ_P0062530 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062531.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94272829 94274432 + MGP_C57BL6NJ_P0062531 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062532.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94272832 94274546 + MGP_C57BL6NJ_P0062532 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0062533.1 MGP_C57BL6NJ_G0027890.1 mouse_genomes_project 3 94272844 94274835 + MGP_C57BL6NJ_P0062533 S100a16 protein_coding protein_coding MGP_C57BL6NJ_T0014699.1 MGP_C57BL6NJ_G0012744.1 mouse_genomes_project 3 149015241 149015605 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064529.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150826980 150828882 + MGP_C57BL6NJ_P0064529 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0064530.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150827006 150840129 + MGP_C57BL6NJ_P0064530 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0064531.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150827097 150831118 + MGP_C57BL6NJ_P0064531 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0064532.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150827099 150840136 + MGP_C57BL6NJ_P0064532 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0064533.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150827129 150832443 + Gbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0064534.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150827357 150840134 + MGP_C57BL6NJ_P0064534 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0064535.1 MGP_C57BL6NJ_G0028356.1 mouse_genomes_project 3 150828180 150831989 + MGP_C57BL6NJ_P0064535 Gbp3 protein_coding protein_coding MGP_C57BL6NJ_T0007613.1 MGP_C57BL6NJ_G0006244.1 mouse_genomes_project 3 5308506 5339251 - 1700010I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007614.1 MGP_C57BL6NJ_G0006244.1 mouse_genomes_project 3 5308506 5339258 - 1700010I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0001338.1 MGP_C57BL6NJ_G0001239.1 mouse_genomes_project 3 52825337 52827349 + TEC TEC MGP_C57BL6NJ_T0061198.1 MGP_C57BL6NJ_G0027619.1 mouse_genomes_project 3 52191568 52308089 - MGP_C57BL6NJ_P0061198 Maml3 protein_coding protein_coding MGP_C57BL6NJ_T0061199.1 MGP_C57BL6NJ_G0027619.1 mouse_genomes_project 3 52191568 52632953 - MGP_C57BL6NJ_P0061199 Maml3 protein_coding protein_coding MGP_C57BL6NJ_T0061200.1 MGP_C57BL6NJ_G0027619.1 mouse_genomes_project 3 52305929 52308127 - Maml3 protein_coding retained_intron MGP_C57BL6NJ_T0010786.1 MGP_C57BL6NJ_G0008871.1 mouse_genomes_project 3 129337266 129337323 - Mir7657 miRNA miRNA MGP_C57BL6NJ_T0014613.1 MGP_C57BL6NJ_G0012658.1 mouse_genomes_project 3 120958650 120959302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062552.1 MGP_C57BL6NJ_G0027899.1 mouse_genomes_project 3 94435803 94438869 - MGP_C57BL6NJ_P0062552 S100a9 protein_coding protein_coding MGP_C57BL6NJ_T0062553.1 MGP_C57BL6NJ_G0027899.1 mouse_genomes_project 3 94435803 94438879 - MGP_C57BL6NJ_P0062553 S100a9 protein_coding protein_coding MGP_C57BL6NJ_T0099430.1 MGP_C57BL6NJ_G0037487.1 mouse_genomes_project 3 110864223 110866163 + Gm43847 sense_intronic sense_intronic MGP_C57BL6NJ_T0062050.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91896508 91915367 - MGP_C57BL6NJ_P0062050 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062051.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91896511 91901689 - Sema4a protein_coding retained_intron MGP_C57BL6NJ_T0062052.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91896511 91909180 - Sema4a protein_coding retained_intron MGP_C57BL6NJ_T0062053.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91896511 91910584 - Sema4a protein_coding retained_intron MGP_C57BL6NJ_T0062054.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91910235 91911996 - MGP_C57BL6NJ_P0062054 Sema4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062055.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91910373 91912336 - Sema4a protein_coding retained_intron MGP_C57BL6NJ_T0062056.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91910580 91915864 - MGP_C57BL6NJ_P0062056 Sema4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062057.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91910642 91919651 - MGP_C57BL6NJ_P0062057 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062058.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91911113 91919580 - MGP_C57BL6NJ_P0062058 Sema4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062059.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91911130 91919426 - MGP_C57BL6NJ_P0062059 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062060.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91912593 91915855 - MGP_C57BL6NJ_P0062060 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062061.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91913380 91915392 - Sema4a protein_coding retained_intron MGP_C57BL6NJ_T0062062.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91913638 91916965 - MGP_C57BL6NJ_P0062062 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062063.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91915314 91916986 - MGP_C57BL6NJ_P0062063 Sema4a protein_coding protein_coding MGP_C57BL6NJ_T0062064.1 MGP_C57BL6NJ_G0027816.1 mouse_genomes_project 3 91916274 91916986 - Sema4a protein_coding processed_transcript MGP_C57BL6NJ_T0102227.1 MGP_C57BL6NJ_G0040229.1 mouse_genomes_project 3 12491700 12491980 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014688.1 MGP_C57BL6NJ_G0012733.1 mouse_genomes_project 3 146526434 146528184 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062695.1 MGP_C57BL6NJ_G0027975.1 mouse_genomes_project 3 98822756 98823245 + MGP_C57BL6NJ_P0062695 Gm10972 protein_coding protein_coding MGP_C57BL6NJ_T0103071.1 MGP_C57BL6NJ_G0040865.1 mouse_genomes_project 3 60535565 60668898 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007683.1 MGP_C57BL6NJ_G0006294.1 mouse_genomes_project 3 37414891 37513614 + lincRNA lincRNA MGP_C57BL6NJ_T0063358.1 MGP_C57BL6NJ_G0028117.1 mouse_genomes_project 3 109015824 109021877 + MGP_C57BL6NJ_P0063358 Bcl2l15 protein_coding protein_coding MGP_C57BL6NJ_T0063359.1 MGP_C57BL6NJ_G0028117.1 mouse_genomes_project 3 109015994 109041848 + MGP_C57BL6NJ_P0063359 Bcl2l15 protein_coding protein_coding MGP_C57BL6NJ_T0063360.1 MGP_C57BL6NJ_G0028117.1 mouse_genomes_project 3 109034053 109041057 + Bcl2l15 protein_coding processed_transcript MGP_C57BL6NJ_T0063361.1 MGP_C57BL6NJ_G0028117.1 mouse_genomes_project 3 109039197 109040896 + Bcl2l15 protein_coding processed_transcript MGP_C57BL6NJ_T0007631.1 MGP_C57BL6NJ_G0006255.1 mouse_genomes_project 3 13104091 13122406 - Gm33819 lincRNA lincRNA MGP_C57BL6NJ_T0102495.1 MGP_C57BL6NJ_G0040365.1 mouse_genomes_project 3 153327214 153359514 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102496.1 MGP_C57BL6NJ_G0040365.1 mouse_genomes_project 3 153349090 153365809 - transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0064562.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152555501 152570477 - MGP_C57BL6NJ_P0064562 Lmo4 protein_coding protein_coding MGP_C57BL6NJ_T0064563.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152555501 152574574 - MGP_C57BL6NJ_P0064563 Lmo4 protein_coding protein_coding MGP_C57BL6NJ_T0064564.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152555506 152574574 - MGP_C57BL6NJ_P0064564 Lmo4 protein_coding protein_coding MGP_C57BL6NJ_T0064565.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152555603 152570413 - MGP_C57BL6NJ_P0064565 Lmo4 protein_coding protein_coding MGP_C57BL6NJ_T0064566.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152556033 152561790 - Lmo4 protein_coding retained_intron MGP_C57BL6NJ_T0064567.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152560959 152572331 - MGP_C57BL6NJ_P0064567 Lmo4 protein_coding protein_coding MGP_C57BL6NJ_T0064568.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152568863 152574534 - Lmo4 protein_coding retained_intron MGP_C57BL6NJ_T0064569.1 MGP_C57BL6NJ_G0028362.1 mouse_genomes_project 3 152569703 152570381 - Lmo4 protein_coding retained_intron MGP_C57BL6NJ_T0014269.1 MGP_C57BL6NJ_G0012314.1 mouse_genomes_project 3 12749528 12749747 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014339.1 MGP_C57BL6NJ_G0012384.1 mouse_genomes_project 3 38110223 38110755 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001236.1 MGP_C57BL6NJ_G0001140.1 mouse_genomes_project 3 285897 286024 + TEC TEC MGP_C57BL6NJ_T0064200.1 MGP_C57BL6NJ_G0028293.1 mouse_genomes_project 3 137345114 137403050 - MGP_C57BL6NJ_P0064200 Ccdc109b protein_coding protein_coding MGP_C57BL6NJ_T0064201.1 MGP_C57BL6NJ_G0028293.1 mouse_genomes_project 3 137345129 137402892 - MGP_C57BL6NJ_P0064201 Ccdc109b protein_coding protein_coding MGP_C57BL6NJ_T0064202.1 MGP_C57BL6NJ_G0028293.1 mouse_genomes_project 3 137347234 137402833 - MGP_C57BL6NJ_P0064202 Ccdc109b protein_coding protein_coding MGP_C57BL6NJ_T0064203.1 MGP_C57BL6NJ_G0028293.1 mouse_genomes_project 3 137357416 137402968 - MGP_C57BL6NJ_P0064203 Ccdc109b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014535.1 MGP_C57BL6NJ_G0012580.1 mouse_genomes_project 3 99703459 99703859 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007934.1 MGP_C57BL6NJ_G0006491.1 mouse_genomes_project 3 156241234 156263060 - Gm36888 lincRNA lincRNA MGP_C57BL6NJ_T0101599.1 MGP_C57BL6NJ_G0039645.1 mouse_genomes_project 3 103869799 103869928 - Gm22341 snoRNA snoRNA MGP_C57BL6NJ_T0004504.1 MGP_C57BL6NJ_G0003929.1 mouse_genomes_project 3 122341061 122359120 + Gm43109 antisense antisense MGP_C57BL6NJ_T0064282.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140524382 140632590 - MGP_C57BL6NJ_P0064282 Gstcd protein_coding protein_coding MGP_C57BL6NJ_T0064283.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140525405 140632798 - MGP_C57BL6NJ_P0064283 Gstcd protein_coding protein_coding MGP_C57BL6NJ_T0064284.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140536626 140546181 - Gstcd protein_coding retained_intron MGP_C57BL6NJ_T0064285.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140539334 140632512 - Gstcd protein_coding processed_transcript MGP_C57BL6NJ_T0064286.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140621944 140632543 - Gstcd protein_coding retained_intron MGP_C57BL6NJ_T0064287.1 MGP_C57BL6NJ_G0028309.1 mouse_genomes_project 3 140622140 140623905 - Gstcd protein_coding retained_intron MGP_C57BL6NJ_T0061848.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89464813 90064550 + MGP_C57BL6NJ_P0061848 Lrba protein_coding protein_coding MGP_C57BL6NJ_T0061849.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89464813 90027572 + MGP_C57BL6NJ_P0061849 Lrba protein_coding protein_coding MGP_C57BL6NJ_T0061850.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89464813 90058790 + MGP_C57BL6NJ_P0061850 Lrba protein_coding protein_coding MGP_C57BL6NJ_T0061851.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89586032 89588957 + Lrba protein_coding retained_intron MGP_C57BL6NJ_T0061852.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89797902 89876482 + Lrba protein_coding retained_intron MGP_C57BL6NJ_T0061855.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89803576 89890236 + Lrba protein_coding retained_intron MGP_C57BL6NJ_T0061856.1 MGP_C57BL6NJ_G0027773.1 mouse_genomes_project 3 89805037 90064553 + MGP_C57BL6NJ_P0061856 Lrba protein_coding protein_coding MGP_C57BL6NJ_T0061788.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87197239 87349359 - MGP_C57BL6NJ_P0061788 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061789.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87197240 87300304 - MGP_C57BL6NJ_P0061789 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061790.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87197241 87260456 - MGP_C57BL6NJ_P0061790 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061791.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87198674 87260444 - MGP_C57BL6NJ_P0061791 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061792.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87200137 87252413 - MGP_C57BL6NJ_P0061792 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061793.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87200507 87260412 - Trim2 protein_coding retained_intron MGP_C57BL6NJ_T0061794.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87200522 87312111 - MGP_C57BL6NJ_P0061794 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061796.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87214044 87228971 - Trim2 protein_coding retained_intron MGP_C57BL6NJ_T0061797.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87226827 87260441 - Trim2 protein_coding retained_intron MGP_C57BL6NJ_T0061798.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87229109 87229996 - Trim2 protein_coding processed_transcript MGP_C57BL6NJ_T0061799.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87230647 87349947 - MGP_C57BL6NJ_P0061799 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061800.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87230658 87349996 - MGP_C57BL6NJ_P0061800 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061801.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87231806 87299861 - MGP_C57BL6NJ_P0061801 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061802.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87246044 87260428 - Trim2 protein_coding retained_intron MGP_C57BL6NJ_T0061803.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87247353 87260441 - Trim2 protein_coding retained_intron MGP_C57BL6NJ_T0061804.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87247955 87260441 - MGP_C57BL6NJ_P0061804 Trim2 protein_coding protein_coding MGP_C57BL6NJ_T0061805.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87298174 87299861 - Trim2 protein_coding processed_transcript MGP_C57BL6NJ_T0061806.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87344511 87349291 - Trim2 protein_coding processed_transcript MGP_C57BL6NJ_T0061807.1 MGP_C57BL6NJ_G0027759.1 mouse_genomes_project 3 87349395 87351427 - Trim2 protein_coding processed_transcript MGP_C57BL6NJ_T0010738.1 MGP_C57BL6NJ_G0008823.1 mouse_genomes_project 3 27189552 27189628 + Mir466q miRNA miRNA MGP_C57BL6NJ_T0064579.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153084233 153121981 - MGP_C57BL6NJ_P0064579 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064580.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153085450 153098017 - MGP_C57BL6NJ_P0064580 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064581.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153087466 153122194 - MGP_C57BL6NJ_P0064581 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064582.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153089399 153122206 - MGP_C57BL6NJ_P0064582 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064583.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153091901 153122076 - MGP_C57BL6NJ_P0064583 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064584.1 MGP_C57BL6NJ_G0028365.1 mouse_genomes_project 3 153092533 153108515 - MGP_C57BL6NJ_P0064584 Sh3glb1 protein_coding protein_coding MGP_C57BL6NJ_T0064590.1 MGP_C57BL6NJ_G0028368.1 mouse_genomes_project 3 153289296 153315433 - MGP_C57BL6NJ_P0064590 Clca3b protein_coding protein_coding MGP_C57BL6NJ_T0103085.1 MGP_C57BL6NJ_G0040879.1 mouse_genomes_project 3 93606126 93613255 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010739.1 MGP_C57BL6NJ_G0008824.1 mouse_genomes_project 3 28308172 28308270 + Mir551b miRNA miRNA MGP_C57BL6NJ_T0014523.1 MGP_C57BL6NJ_G0012568.1 mouse_genomes_project 3 97297082 97298641 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014246.1 MGP_C57BL6NJ_G0012291.1 mouse_genomes_project 3 6565635 6566080 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103089.1 MGP_C57BL6NJ_G0040883.1 mouse_genomes_project 3 94788319 94795455 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014451.1 MGP_C57BL6NJ_G0012496.1 mouse_genomes_project 3 71264885 71266245 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014260.1 MGP_C57BL6NJ_G0012305.1 mouse_genomes_project 3 11249777 11250178 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061822.1 MGP_C57BL6NJ_G0027766.1 mouse_genomes_project 3 87918638 88093473 + MGP_C57BL6NJ_P0061822 Fbxw7 protein_coding protein_coding MGP_C57BL6NJ_T0061823.1 MGP_C57BL6NJ_G0027766.1 mouse_genomes_project 3 87918848 88091957 + Fbxw7 protein_coding retained_intron MGP_C57BL6NJ_T0061824.1 MGP_C57BL6NJ_G0027766.1 mouse_genomes_project 3 87973481 88093473 + MGP_C57BL6NJ_P0061824 Fbxw7 protein_coding protein_coding MGP_C57BL6NJ_T0061825.1 MGP_C57BL6NJ_G0027766.1 mouse_genomes_project 3 88039959 88093472 + MGP_C57BL6NJ_P0061825 Fbxw7 protein_coding protein_coding MGP_C57BL6NJ_T0061826.1 MGP_C57BL6NJ_G0027766.1 mouse_genomes_project 3 88066392 88091920 + MGP_C57BL6NJ_P0061826 Fbxw7 protein_coding protein_coding MGP_C57BL6NJ_T0063200.1 MGP_C57BL6NJ_G0028085.1 mouse_genomes_project 3 105803712 105814952 + MGP_C57BL6NJ_P0063200 Trim45 protein_coding protein_coding MGP_C57BL6NJ_T0063201.1 MGP_C57BL6NJ_G0028085.1 mouse_genomes_project 3 105803985 105817261 + MGP_C57BL6NJ_P0063201 Trim45 protein_coding protein_coding MGP_C57BL6NJ_T0063202.1 MGP_C57BL6NJ_G0028085.1 mouse_genomes_project 3 105804003 105820170 + MGP_C57BL6NJ_P0063202 Trim45 protein_coding protein_coding MGP_C57BL6NJ_T0063203.1 MGP_C57BL6NJ_G0028085.1 mouse_genomes_project 3 105804422 105815307 + MGP_C57BL6NJ_P0063203 Trim45 protein_coding protein_coding MGP_C57BL6NJ_T0014626.1 MGP_C57BL6NJ_G0012671.1 mouse_genomes_project 3 126261648 126261994 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064246.1 MGP_C57BL6NJ_G0028300.1 mouse_genomes_project 3 138750214 138788900 - MGP_C57BL6NJ_P0064246 Hadh protein_coding protein_coding MGP_C57BL6NJ_T0064247.1 MGP_C57BL6NJ_G0028300.1 mouse_genomes_project 3 138761896 138788823 - Hadh protein_coding retained_intron MGP_C57BL6NJ_T0014641.1 MGP_C57BL6NJ_G0012686.1 mouse_genomes_project 3 129986809 129987497 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007844.1 MGP_C57BL6NJ_G0006416.1 mouse_genomes_project 3 122922080 122922504 + 4930512P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0063458.1 MGP_C57BL6NJ_G0028139.1 mouse_genomes_project 3 111316418 111326492 - MGP_C57BL6NJ_P0063458 I830077J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0063459.1 MGP_C57BL6NJ_G0028139.1 mouse_genomes_project 3 111318477 111320125 - MGP_C57BL6NJ_P0063459 I830077J02Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063460.1 MGP_C57BL6NJ_G0028139.1 mouse_genomes_project 3 111319811 111326444 - I830077J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0101557.1 MGP_C57BL6NJ_G0039603.1 mouse_genomes_project 3 12172936 12173061 - Gm23112 snoRNA snoRNA MGP_C57BL6NJ_T0064251.1 MGP_C57BL6NJ_G0028302.1 mouse_genomes_project 3 138842305 138870788 - MGP_C57BL6NJ_P0064251 Sgms2 protein_coding protein_coding MGP_C57BL6NJ_T0064252.1 MGP_C57BL6NJ_G0028302.1 mouse_genomes_project 3 138867964 138870795 - MGP_C57BL6NJ_P0064252 Sgms2 protein_coding protein_coding MGP_C57BL6NJ_T0064253.1 MGP_C57BL6NJ_G0028302.1 mouse_genomes_project 3 138868023 138936389 - MGP_C57BL6NJ_P0064253 Sgms2 protein_coding protein_coding MGP_C57BL6NJ_T0064254.1 MGP_C57BL6NJ_G0028302.1 mouse_genomes_project 3 138868088 138937321 - Sgms2 protein_coding processed_transcript MGP_C57BL6NJ_T0014461.1 MGP_C57BL6NJ_G0012506.1 mouse_genomes_project 3 73523595 73524036 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010790.1 MGP_C57BL6NJ_G0008875.1 mouse_genomes_project 3 134727841 134727910 + Mir302a miRNA miRNA MGP_C57BL6NJ_T0004391.1 MGP_C57BL6NJ_G0003857.1 mouse_genomes_project 3 53615613 53618784 - Gm42901 antisense antisense MGP_C57BL6NJ_T0018438.1 MGP_C57BL6NJ_G0015905.1 mouse_genomes_project 3 100625533 100627192 - Gm20627 processed_transcript lincRNA MGP_C57BL6NJ_T0018439.1 MGP_C57BL6NJ_G0015905.1 mouse_genomes_project 3 100625535 100626384 - Gm20627 processed_transcript retained_intron MGP_C57BL6NJ_T0100304.1 MGP_C57BL6NJ_G0038350.1 mouse_genomes_project 3 122688013 122688189 - Gm22361 snRNA snRNA MGP_C57BL6NJ_T0063211.1 MGP_C57BL6NJ_G0028088.1 mouse_genomes_project 3 105936872 106013868 - MGP_C57BL6NJ_P0063211 Ptgfrn protein_coding protein_coding MGP_C57BL6NJ_T0063212.1 MGP_C57BL6NJ_G0028088.1 mouse_genomes_project 3 105959707 105973616 - Ptgfrn protein_coding processed_transcript MGP_C57BL6NJ_T0063213.1 MGP_C57BL6NJ_G0028088.1 mouse_genomes_project 3 105974102 105978888 - Ptgfrn protein_coding retained_intron MGP_C57BL6NJ_T0103083.1 MGP_C57BL6NJ_G0040877.1 mouse_genomes_project 3 91784731 91785750 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0063351.1 MGP_C57BL6NJ_G0028116.1 mouse_genomes_project 3 108992851 109021877 + MGP_C57BL6NJ_P0063351 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061935.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91291821 91295946 + MGP_C57BL6NJ_P0061935 Mrpl24 protein_coding protein_coding MGP_C57BL6NJ_T0061936.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91291821 91295936 + MGP_C57BL6NJ_P0061936 Mrpl24 protein_coding protein_coding MGP_C57BL6NJ_T0061937.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91291851 91294326 + MGP_C57BL6NJ_P0061937 Mrpl24 protein_coding protein_coding MGP_C57BL6NJ_T0061938.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91291872 91292834 + Mrpl24 protein_coding retained_intron MGP_C57BL6NJ_T0061939.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91291878 91295946 + MGP_C57BL6NJ_P0061939 Mrpl24 protein_coding protein_coding MGP_C57BL6NJ_T0061940.1 MGP_C57BL6NJ_G0027792.1 mouse_genomes_project 3 91293882 91295946 + MGP_C57BL6NJ_P0061940 Mrpl24 protein_coding protein_coding MGP_C57BL6NJ_T0062269.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863617 92865895 - Slc50a1 protein_coding retained_intron MGP_C57BL6NJ_T0062270.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863617 92865898 - Slc50a1 protein_coding retained_intron MGP_C57BL6NJ_T0062271.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863617 92865867 - MGP_C57BL6NJ_P0062271 Slc50a1 protein_coding protein_coding MGP_C57BL6NJ_T0062272.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863617 92865942 - MGP_C57BL6NJ_P0062272 Slc50a1 protein_coding protein_coding MGP_C57BL6NJ_T0062273.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863617 92865851 - MGP_C57BL6NJ_P0062273 Slc50a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062274.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863619 92865897 - Slc50a1 protein_coding retained_intron MGP_C57BL6NJ_T0062275.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92863619 92865941 - Slc50a1 protein_coding retained_intron MGP_C57BL6NJ_T0062276.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92864442 92865942 - MGP_C57BL6NJ_P0062276 Slc50a1 protein_coding protein_coding MGP_C57BL6NJ_T0062277.1 MGP_C57BL6NJ_G0027847.1 mouse_genomes_project 3 92864516 92865599 - Slc50a1 protein_coding processed_transcript MGP_C57BL6NJ_T0001312.1 MGP_C57BL6NJ_G0001215.1 mouse_genomes_project 3 51300129 51303943 - TEC TEC MGP_C57BL6NJ_T0004440.1 MGP_C57BL6NJ_G0003893.1 mouse_genomes_project 3 98533104 98541142 - Gm43306 antisense antisense MGP_C57BL6NJ_T0062175.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92644555 92667295 - MGP_C57BL6NJ_P0062175 Fdps protein_coding protein_coding MGP_C57BL6NJ_T0062176.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92644555 92667224 - MGP_C57BL6NJ_P0062176 Fdps protein_coding protein_coding MGP_C57BL6NJ_T0062177.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92644716 92648989 - MGP_C57BL6NJ_P0062177 Fdps protein_coding protein_coding MGP_C57BL6NJ_T0062178.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92646023 92649293 - Fdps protein_coding retained_intron MGP_C57BL6NJ_T0062179.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92648673 92666651 - MGP_C57BL6NJ_P0062179 Fdps protein_coding protein_coding MGP_C57BL6NJ_T0062180.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92648908 92667188 - MGP_C57BL6NJ_P0062180 Fdps protein_coding protein_coding MGP_C57BL6NJ_T0062181.1 MGP_C57BL6NJ_G0027834.1 mouse_genomes_project 3 92652248 92667227 - Fdps protein_coding retained_intron MGP_C57BL6NJ_T0014658.1 MGP_C57BL6NJ_G0012703.1 mouse_genomes_project 3 138232669 138232967 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014242.1 MGP_C57BL6NJ_G0012287.1 mouse_genomes_project 3 6045026 6046256 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062280.1 MGP_C57BL6NJ_G0027849.1 mouse_genomes_project 3 92909249 92918314 - MGP_C57BL6NJ_P0062280 Efna3 protein_coding protein_coding MGP_C57BL6NJ_T0062281.1 MGP_C57BL6NJ_G0027849.1 mouse_genomes_project 3 92910714 92918236 - MGP_C57BL6NJ_P0062281 Efna3 protein_coding protein_coding MGP_C57BL6NJ_T0062282.1 MGP_C57BL6NJ_G0027849.1 mouse_genomes_project 3 92911209 92916980 - Efna3 protein_coding processed_transcript MGP_C57BL6NJ_T0064691.1 MGP_C57BL6NJ_G0028391.1 mouse_genomes_project 3 155202770 155208971 - MGP_C57BL6NJ_P0064691 4930503B20Rik protein_coding protein_coding MGP_C57BL6NJ_T0064696.1 MGP_C57BL6NJ_G0028391.1 mouse_genomes_project 3 155203834 155205960 - 4930503B20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0064697.1 MGP_C57BL6NJ_G0028391.1 mouse_genomes_project 3 155207219 155208969 - MGP_C57BL6NJ_P0064697 4930503B20Rik protein_coding protein_coding MGP_C57BL6NJ_T0004465.1 MGP_C57BL6NJ_G0003909.1 mouse_genomes_project 3 104016259 104022847 - Gm43120 antisense antisense MGP_C57BL6NJ_T0004432.1 MGP_C57BL6NJ_G0003888.1 mouse_genomes_project 3 92934593 92945170 + 4731419I09Rik antisense antisense MGP_C57BL6NJ_T0101578.1 MGP_C57BL6NJ_G0039624.1 mouse_genomes_project 3 69232138 69232270 - Gm25919 snoRNA snoRNA MGP_C57BL6NJ_T0062787.1 MGP_C57BL6NJ_G0027989.1 mouse_genomes_project 3 99394092 99401716 + MGP_C57BL6NJ_P0062787 Gm9726 protein_coding protein_coding MGP_C57BL6NJ_T0061655.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78330124 78416997 - MGP_C57BL6NJ_P0061655 Golim4 protein_coding protein_coding MGP_C57BL6NJ_T0061656.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78331223 78417017 - MGP_C57BL6NJ_P0061656 Golim4 protein_coding protein_coding MGP_C57BL6NJ_T0061657.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78331519 78334952 - Golim4 protein_coding retained_intron MGP_C57BL6NJ_T0061658.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78332699 78417005 - MGP_C57BL6NJ_P0061658 Golim4 protein_coding protein_coding MGP_C57BL6NJ_T0061659.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78342676 78348956 - Golim4 protein_coding retained_intron MGP_C57BL6NJ_T0061660.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78350680 78358272 - MGP_C57BL6NJ_P0061660 Golim4 protein_coding protein_coding MGP_C57BL6NJ_T0061661.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78355052 78416976 - Golim4 protein_coding retained_intron MGP_C57BL6NJ_T0061662.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78365672 78416718 - Golim4 protein_coding retained_intron MGP_C57BL6NJ_T0061663.1 MGP_C57BL6NJ_G0027727.1 mouse_genomes_project 3 78415183 78416999 - Golim4 protein_coding retained_intron MGP_C57BL6NJ_T0064830.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742201 161824084 + MGP_C57BL6NJ_P0064830 Pigk protein_coding protein_coding MGP_C57BL6NJ_T0064831.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742207 161774294 + Pigk protein_coding retained_intron MGP_C57BL6NJ_T0064832.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742214 161819889 + MGP_C57BL6NJ_P0064832 Pigk protein_coding protein_coding MGP_C57BL6NJ_T0064833.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742214 161873737 + MGP_C57BL6NJ_P0064833 Pigk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064834.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742221 162018516 + MGP_C57BL6NJ_P0064834 Pigk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064835.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161742224 161819620 + MGP_C57BL6NJ_P0064835 Pigk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064836.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161771172 161773326 + Pigk protein_coding processed_transcript MGP_C57BL6NJ_T0064837.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161771391 161819815 + MGP_C57BL6NJ_P0064837 Pigk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064838.1 MGP_C57BL6NJ_G0028408.1 mouse_genomes_project 3 161796419 161799563 + Pigk protein_coding processed_transcript MGP_C57BL6NJ_T0061609.1 MGP_C57BL6NJ_G0027713.1 mouse_genomes_project 3 71027156 71028356 + MGP_C57BL6NJ_P0061609 Arl14 protein_coding protein_coding MGP_C57BL6NJ_T0014712.1 MGP_C57BL6NJ_G0012757.1 mouse_genomes_project 3 155113038 155113430 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061817.1 MGP_C57BL6NJ_G0027764.1 mouse_genomes_project 3 87670589 87674048 + MGP_C57BL6NJ_P0061817 Tigd4 protein_coding protein_coding MGP_C57BL6NJ_T0101616.1 MGP_C57BL6NJ_G0039662.1 mouse_genomes_project 3 135817780 135817889 + Gm22293 snoRNA snoRNA MGP_C57BL6NJ_T0007695.1 MGP_C57BL6NJ_G0006303.1 mouse_genomes_project 3 40981877 40996862 + Gm30852 lincRNA lincRNA MGP_C57BL6NJ_T0007696.1 MGP_C57BL6NJ_G0006303.1 mouse_genomes_project 3 40995356 41022619 + Gm30852 lincRNA lincRNA MGP_C57BL6NJ_T0014284.1 MGP_C57BL6NJ_G0012329.1 mouse_genomes_project 3 17996171 17997222 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011800.1 MGP_C57BL6NJ_G0009885.1 mouse_genomes_project 3 60004005 60004081 + Gm27793 misc_RNA misc_RNA MGP_C57BL6NJ_T0014224.1 MGP_C57BL6NJ_G0012269.1 mouse_genomes_project 3 1689195 1689439 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004441.1 MGP_C57BL6NJ_G0003894.1 mouse_genomes_project 3 98556867 98566979 - Gm43401 antisense antisense MGP_C57BL6NJ_T0007759.1 MGP_C57BL6NJ_G0006350.1 mouse_genomes_project 3 83876718 83878752 + lincRNA lincRNA MGP_C57BL6NJ_T0004560.1 MGP_C57BL6NJ_G0003971.1 mouse_genomes_project 3 161954812 161955972 + Gm16213 antisense antisense MGP_C57BL6NJ_T0014608.1 MGP_C57BL6NJ_G0012653.1 mouse_genomes_project 3 119017049 119017879 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101588.1 MGP_C57BL6NJ_G0039634.1 mouse_genomes_project 3 89360293 89360364 - Rnu73b snoRNA snoRNA MGP_C57BL6NJ_T0103112.1 MGP_C57BL6NJ_G0040906.1 mouse_genomes_project 3 103596154 103601457 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014555.1 MGP_C57BL6NJ_G0012600.1 mouse_genomes_project 3 104335505 104336160 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001424.1 MGP_C57BL6NJ_G0001325.1 mouse_genomes_project 3 122780831 122781270 + TEC TEC MGP_C57BL6NJ_T0061373.1 MGP_C57BL6NJ_G0027656.1 mouse_genomes_project 3 59534044 59551684 + MGP_C57BL6NJ_P0061373 protein_coding protein_coding MGP_C57BL6NJ_T0061374.1 MGP_C57BL6NJ_G0027656.1 mouse_genomes_project 3 59534106 59545932 + protein_coding retained_intron MGP_C57BL6NJ_T0064157.1 MGP_C57BL6NJ_G0028284.1 mouse_genomes_project 3 136635537 136713134 - MGP_C57BL6NJ_P0064157 Enpep protein_coding protein_coding MGP_C57BL6NJ_T0064158.1 MGP_C57BL6NJ_G0028284.1 mouse_genomes_project 3 136636639 136712678 - MGP_C57BL6NJ_P0064158 Enpep protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064159.1 MGP_C57BL6NJ_G0028284.1 mouse_genomes_project 3 136645302 136649447 - Enpep protein_coding retained_intron MGP_C57BL6NJ_T0064160.1 MGP_C57BL6NJ_G0028284.1 mouse_genomes_project 3 136645473 136681255 - MGP_C57BL6NJ_P0064160 Enpep protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064161.1 MGP_C57BL6NJ_G0028284.1 mouse_genomes_project 3 136670815 136713134 - Enpep protein_coding retained_intron MGP_C57BL6NJ_T0014560.1 MGP_C57BL6NJ_G0012605.1 mouse_genomes_project 3 105841514 105842013 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064630.1 MGP_C57BL6NJ_G0028377.1 mouse_genomes_project 3 154444488 154446856 + Bcl10 protein_coding retained_intron MGP_C57BL6NJ_T0064631.1 MGP_C57BL6NJ_G0028377.1 mouse_genomes_project 3 154445946 154456033 + MGP_C57BL6NJ_P0064631 Bcl10 protein_coding protein_coding MGP_C57BL6NJ_T0064632.1 MGP_C57BL6NJ_G0028377.1 mouse_genomes_project 3 154446041 154449616 + Bcl10 protein_coding processed_transcript MGP_C57BL6NJ_T0100260.1 MGP_C57BL6NJ_G0038306.1 mouse_genomes_project 3 64818495 64818601 + Gm24946 snRNA snRNA MGP_C57BL6NJ_T0061337.1 MGP_C57BL6NJ_G0027648.1 mouse_genomes_project 3 58328681 58453978 - MGP_C57BL6NJ_P0061337 Wwtr1 protein_coding protein_coding MGP_C57BL6NJ_T0061338.1 MGP_C57BL6NJ_G0027648.1 mouse_genomes_project 3 58328814 58454060 - MGP_C57BL6NJ_P0061338 Wwtr1 protein_coding protein_coding MGP_C57BL6NJ_T0100321.1 MGP_C57BL6NJ_G0038367.1 mouse_genomes_project 3 158105111 158105217 - Gm26468 snRNA snRNA MGP_C57BL6NJ_T0064547.1 MGP_C57BL6NJ_G0028360.1 mouse_genomes_project 3 151045546 151064428 + MGP_C57BL6NJ_P0064547 Gtf2b protein_coding protein_coding MGP_C57BL6NJ_T0064548.1 MGP_C57BL6NJ_G0028360.1 mouse_genomes_project 3 151045724 151048924 + Gtf2b protein_coding retained_intron MGP_C57BL6NJ_T0007742.1 MGP_C57BL6NJ_G0006337.1 mouse_genomes_project 3 72753189 72793180 - Gm6634 lincRNA lincRNA MGP_C57BL6NJ_T0001350.1 MGP_C57BL6NJ_G0001251.1 mouse_genomes_project 3 56811944 56813924 - TEC TEC MGP_C57BL6NJ_T0007894.1 MGP_C57BL6NJ_G0006456.1 mouse_genomes_project 3 145153166 145169088 + Gm567 lincRNA lincRNA MGP_C57BL6NJ_T0101563.1 MGP_C57BL6NJ_G0039609.1 mouse_genomes_project 3 33175659 33175791 - Gm23175 snoRNA snoRNA MGP_C57BL6NJ_T0063851.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122927771 122974631 - MGP_C57BL6NJ_P0063851 Slc35a3 protein_coding protein_coding MGP_C57BL6NJ_T0063852.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122931454 122974212 - MGP_C57BL6NJ_P0063852 Slc35a3 protein_coding protein_coding MGP_C57BL6NJ_T0063853.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122932689 122935449 - Slc35a3 protein_coding processed_transcript MGP_C57BL6NJ_T0063854.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122940125 122973823 - MGP_C57BL6NJ_P0063854 Slc35a3 protein_coding protein_coding MGP_C57BL6NJ_T0063855.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122940260 122974193 - MGP_C57BL6NJ_P0063855 Slc35a3 protein_coding protein_coding MGP_C57BL6NJ_T0063856.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122951914 122974238 - Slc35a3 protein_coding retained_intron MGP_C57BL6NJ_T0063857.1 MGP_C57BL6NJ_G0028233.1 mouse_genomes_project 3 122955658 122974812 - MGP_C57BL6NJ_P0063857 Slc35a3 protein_coding protein_coding MGP_C57BL6NJ_T0100313.1 MGP_C57BL6NJ_G0038359.1 mouse_genomes_project 3 140481795 140481902 + Gm23196 snRNA snRNA MGP_C57BL6NJ_T0062297.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92947557 92962590 - MGP_C57BL6NJ_P0062297 Dcst1 protein_coding protein_coding MGP_C57BL6NJ_T0062298.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92948361 92952885 - Dcst1 protein_coding retained_intron MGP_C57BL6NJ_T0062299.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92950059 92952855 - Dcst1 protein_coding processed_transcript MGP_C57BL6NJ_T0062300.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92950967 92952237 - Dcst1 protein_coding retained_intron MGP_C57BL6NJ_T0062301.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92954846 92961599 - Dcst1 protein_coding retained_intron MGP_C57BL6NJ_T0062302.1 MGP_C57BL6NJ_G0027852.1 mouse_genomes_project 3 92954931 92961600 - Dcst1 protein_coding retained_intron MGP_C57BL6NJ_T0063763.1 MGP_C57BL6NJ_G0028213.1 mouse_genomes_project 3 119231411 119529658 - protein_coding retained_intron MGP_C57BL6NJ_T0099420.1 MGP_C57BL6NJ_G0037477.1 mouse_genomes_project 3 109404672 109407102 - Gm43260 sense_intronic sense_intronic MGP_C57BL6NJ_T0062804.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99449788 99491780 - MGP_C57BL6NJ_P0062804 Gabpb2 protein_coding protein_coding MGP_C57BL6NJ_T0062805.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99449788 99491573 - MGP_C57BL6NJ_P0062805 Gabpb2 protein_coding protein_coding MGP_C57BL6NJ_T0062806.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99449795 99482881 - MGP_C57BL6NJ_P0062806 Gabpb2 protein_coding protein_coding MGP_C57BL6NJ_T0062807.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99455611 99461800 - Gabpb2 protein_coding retained_intron MGP_C57BL6NJ_T0062808.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99455747 99491573 - Gabpb2 protein_coding retained_intron MGP_C57BL6NJ_T0062809.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99470283 99491780 - Gabpb2 protein_coding retained_intron MGP_C57BL6NJ_T0062810.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99472415 99491780 - Gabpb2 protein_coding retained_intron MGP_C57BL6NJ_T0062811.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99475858 99491618 - MGP_C57BL6NJ_P0062811 Gabpb2 protein_coding protein_coding MGP_C57BL6NJ_T0062812.1 MGP_C57BL6NJ_G0027993.1 mouse_genomes_project 3 99489099 99491558 - Gabpb2 protein_coding processed_transcript MGP_C57BL6NJ_T0063122.1 MGP_C57BL6NJ_G0028062.1 mouse_genomes_project 3 102298846 102300510 - MGP_C57BL6NJ_P0063122 Gm17651 protein_coding protein_coding MGP_C57BL6NJ_T0014394.1 MGP_C57BL6NJ_G0012439.1 mouse_genomes_project 3 58135746 58136375 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007919.1 MGP_C57BL6NJ_G0006478.1 mouse_genomes_project 3 152090992 152178171 + Gm42705 lincRNA lincRNA MGP_C57BL6NJ_T0004482.1 MGP_C57BL6NJ_G0003920.1 mouse_genomes_project 3 111396555 111414432 + Gm42722 antisense antisense MGP_C57BL6NJ_T0007939.1 MGP_C57BL6NJ_G0006494.1 mouse_genomes_project 3 158064145 158110039 + Gm42649 lincRNA lincRNA MGP_C57BL6NJ_T0007941.1 MGP_C57BL6NJ_G0006494.1 mouse_genomes_project 3 158098771 158101032 + Gm42649 lincRNA lincRNA MGP_C57BL6NJ_T0001440.1 MGP_C57BL6NJ_G0001341.1 mouse_genomes_project 3 128480260 128481333 - TEC TEC MGP_C57BL6NJ_T0014499.1 MGP_C57BL6NJ_G0012544.1 mouse_genomes_project 3 89504248 89504582 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001490.1 MGP_C57BL6NJ_G0001390.1 mouse_genomes_project 3 140312258 140314225 + TEC TEC MGP_C57BL6NJ_T0001441.1 MGP_C57BL6NJ_G0001342.1 mouse_genomes_project 3 128743367 128746577 + TEC TEC MGP_C57BL6NJ_T0063016.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100989295 100993222 + MGP_C57BL6NJ_P0063016 Txnip protein_coding protein_coding MGP_C57BL6NJ_T0063017.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100989298 100993196 + MGP_C57BL6NJ_P0063017 Txnip protein_coding protein_coding MGP_C57BL6NJ_T0063018.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100990836 100991352 + Txnip protein_coding retained_intron MGP_C57BL6NJ_T0063019.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100990849 100991543 + Txnip protein_coding processed_transcript MGP_C57BL6NJ_T0063020.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100991061 100993197 + Txnip protein_coding processed_transcript MGP_C57BL6NJ_T0063021.1 MGP_C57BL6NJ_G0028037.1 mouse_genomes_project 3 100991392 100991904 + Txnip protein_coding retained_intron MGP_C57BL6NJ_T0060498.1 MGP_C57BL6NJ_G0027487.1 mouse_genomes_project 3 8043062 8068589 - MGP_C57BL6NJ_P0060498 Snx16 protein_coding protein_coding MGP_C57BL6NJ_T0060499.1 MGP_C57BL6NJ_G0027487.1 mouse_genomes_project 3 8043391 8068574 - MGP_C57BL6NJ_P0060499 Snx16 protein_coding protein_coding MGP_C57BL6NJ_T0060500.1 MGP_C57BL6NJ_G0027487.1 mouse_genomes_project 3 8044182 8068587 - MGP_C57BL6NJ_P0060500 Snx16 protein_coding protein_coding MGP_C57BL6NJ_T0004471.1 MGP_C57BL6NJ_G0003913.1 mouse_genomes_project 3 107793115 107811213 - Tspan2os antisense antisense MGP_C57BL6NJ_T0014309.1 MGP_C57BL6NJ_G0012354.1 mouse_genomes_project 3 29840049 29840317 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007835.1 MGP_C57BL6NJ_G0006408.1 mouse_genomes_project 3 113870660 113884599 + Gm42754 lincRNA lincRNA MGP_C57BL6NJ_T0062522.1 MGP_C57BL6NJ_G0027889.1 mouse_genomes_project 3 94256052 94257427 + MGP_C57BL6NJ_P0062522 S100a14 protein_coding protein_coding MGP_C57BL6NJ_T0062523.1 MGP_C57BL6NJ_G0027889.1 mouse_genomes_project 3 94256063 94258034 + MGP_C57BL6NJ_P0062523 S100a14 protein_coding protein_coding MGP_C57BL6NJ_T0062524.1 MGP_C57BL6NJ_G0027889.1 mouse_genomes_project 3 94256066 94258034 + MGP_C57BL6NJ_P0062524 S100a14 protein_coding protein_coding MGP_C57BL6NJ_T0062525.1 MGP_C57BL6NJ_G0027889.1 mouse_genomes_project 3 94256068 94258023 + S100a14 protein_coding retained_intron MGP_C57BL6NJ_T0001473.1 MGP_C57BL6NJ_G0001374.1 mouse_genomes_project 3 135041254 135044671 - TEC TEC MGP_C57BL6NJ_T0014597.1 MGP_C57BL6NJ_G0012642.1 mouse_genomes_project 3 116164968 116165611 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103105.1 MGP_C57BL6NJ_G0040899.1 mouse_genomes_project 3 98420295 98422281 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004501.1 MGP_C57BL6NJ_G0003926.1 mouse_genomes_project 3 114375073 114378813 + Gm27244 antisense antisense MGP_C57BL6NJ_T0100291.1 MGP_C57BL6NJ_G0038337.1 mouse_genomes_project 3 100817217 100817382 + Gm24136 snRNA snRNA MGP_C57BL6NJ_T0101602.1 MGP_C57BL6NJ_G0039648.1 mouse_genomes_project 3 108551824 108551926 + Gm25009 snoRNA snoRNA MGP_C57BL6NJ_T0014226.1 MGP_C57BL6NJ_G0012271.1 mouse_genomes_project 3 1689210 1689439 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007720.1 MGP_C57BL6NJ_G0006320.1 mouse_genomes_project 3 54374556 54388417 + lincRNA lincRNA MGP_C57BL6NJ_T0007857.1 MGP_C57BL6NJ_G0006424.1 mouse_genomes_project 3 128403772 128404590 - Gm43607 lincRNA lincRNA MGP_C57BL6NJ_T0102493.1 MGP_C57BL6NJ_G0040364.1 mouse_genomes_project 3 146301924 146316090 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102494.1 MGP_C57BL6NJ_G0040364.1 mouse_genomes_project 3 146301993 146319977 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0063270.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108102957 108115709 + MGP_C57BL6NJ_P0063270 Sike1 protein_coding protein_coding MGP_C57BL6NJ_T0063271.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108102979 108106501 + Sike1 protein_coding retained_intron MGP_C57BL6NJ_T0063272.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108103044 108109444 + MGP_C57BL6NJ_P0063272 Sike1 protein_coding protein_coding MGP_C57BL6NJ_T0063273.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108103298 108104601 + Sike1 protein_coding retained_intron MGP_C57BL6NJ_T0063274.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108103425 108109086 + MGP_C57BL6NJ_P0063274 Sike1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063275.1 MGP_C57BL6NJ_G0028102.1 mouse_genomes_project 3 108103977 108106488 + Sike1 protein_coding retained_intron MGP_C57BL6NJ_T0063531.1 MGP_C57BL6NJ_G0028160.1 mouse_genomes_project 3 112789617 112796917 - MGP_C57BL6NJ_P0063531 Prok1 protein_coding protein_coding MGP_C57BL6NJ_T0063532.1 MGP_C57BL6NJ_G0028160.1 mouse_genomes_project 3 112791077 112795526 - Prok1 protein_coding retained_intron MGP_C57BL6NJ_T0063533.1 MGP_C57BL6NJ_G0028160.1 mouse_genomes_project 3 112793396 112797972 - MGP_C57BL6NJ_P0063533 Prok1 protein_coding protein_coding MGP_C57BL6NJ_T0064126.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134875644 134988341 - MGP_C57BL6NJ_P0064126 Alpk1 protein_coding protein_coding MGP_C57BL6NJ_T0064127.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134875644 134939169 - MGP_C57BL6NJ_P0064127 Alpk1 protein_coding protein_coding MGP_C57BL6NJ_T0064128.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134875733 134988341 - Alpk1 protein_coding retained_intron MGP_C57BL6NJ_T0064129.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134885972 134892671 - MGP_C57BL6NJ_P0064129 Alpk1 protein_coding protein_coding MGP_C57BL6NJ_T0064130.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134933918 134988327 - Alpk1 protein_coding retained_intron MGP_C57BL6NJ_T0064131.1 MGP_C57BL6NJ_G0028279.1 mouse_genomes_project 3 134966018 134988304 - Alpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0061152.1 MGP_C57BL6NJ_G0027611.1 mouse_genomes_project 3 51678681 51704112 + MGP_C57BL6NJ_P0061152 Noct protein_coding protein_coding MGP_C57BL6NJ_T0061153.1 MGP_C57BL6NJ_G0027611.1 mouse_genomes_project 3 51678704 51704099 + MGP_C57BL6NJ_P0061153 Noct protein_coding protein_coding MGP_C57BL6NJ_T0004520.1 MGP_C57BL6NJ_G0003942.1 mouse_genomes_project 3 134295140 134303697 + Gm16958 antisense antisense MGP_C57BL6NJ_T0004521.1 MGP_C57BL6NJ_G0003942.1 mouse_genomes_project 3 134295174 134302726 + Gm16958 antisense antisense MGP_C57BL6NJ_T0014279.1 MGP_C57BL6NJ_G0012324.1 mouse_genomes_project 3 16785943 16787144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001446.1 MGP_C57BL6NJ_G0001347.1 mouse_genomes_project 3 130058019 130060567 - TEC TEC MGP_C57BL6NJ_T0061487.1 MGP_C57BL6NJ_G0027685.1 mouse_genomes_project 3 65440143 65468375 + MGP_C57BL6NJ_P0061487 Vmn2r1 protein_coding protein_coding MGP_C57BL6NJ_T0007929.1 MGP_C57BL6NJ_G0006486.1 mouse_genomes_project 3 154551266 154552504 + Gm43861 lincRNA lincRNA MGP_C57BL6NJ_T0001495.1 MGP_C57BL6NJ_G0001395.1 mouse_genomes_project 3 143141797 143144493 - TEC TEC MGP_C57BL6NJ_T0007908.1 MGP_C57BL6NJ_G0006469.1 mouse_genomes_project 3 151555325 151569983 + A830019L24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007909.1 MGP_C57BL6NJ_G0006469.1 mouse_genomes_project 3 151555798 151571871 + A830019L24Rik lincRNA lincRNA MGP_C57BL6NJ_T0064196.1 MGP_C57BL6NJ_G0028292.1 mouse_genomes_project 3 137330762 137344258 + MGP_C57BL6NJ_P0064196 Casp6 protein_coding protein_coding MGP_C57BL6NJ_T0064197.1 MGP_C57BL6NJ_G0028292.1 mouse_genomes_project 3 137330795 137338899 + Casp6 protein_coding processed_transcript MGP_C57BL6NJ_T0064198.1 MGP_C57BL6NJ_G0028292.1 mouse_genomes_project 3 137330838 137334752 + Casp6 protein_coding retained_intron MGP_C57BL6NJ_T0064199.1 MGP_C57BL6NJ_G0028292.1 mouse_genomes_project 3 137340616 137343756 + Casp6 protein_coding retained_intron MGP_C57BL6NJ_T0001376.1 MGP_C57BL6NJ_G0001277.1 mouse_genomes_project 3 78146363 78146876 - TEC TEC MGP_C57BL6NJ_T0061669.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81734560 81827876 - MGP_C57BL6NJ_P0061669 Rapgef2 protein_coding protein_coding MGP_C57BL6NJ_T0061670.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81734560 81826978 - MGP_C57BL6NJ_P0061670 Rapgef2 protein_coding protein_coding MGP_C57BL6NJ_T0061671.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81734560 81990623 - MGP_C57BL6NJ_P0061671 Rapgef2 protein_coding protein_coding MGP_C57BL6NJ_T0061672.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81789729 81860706 - Rapgef2 protein_coding retained_intron MGP_C57BL6NJ_T0061673.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81794045 81860808 - Rapgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0061674.1 MGP_C57BL6NJ_G0027729.1 mouse_genomes_project 3 81857020 81879325 - Rapgef2 protein_coding retained_intron MGP_C57BL6NJ_T0014512.1 MGP_C57BL6NJ_G0012557.1 mouse_genomes_project 3 94464081 94464984 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001499.1 MGP_C57BL6NJ_G0001399.1 mouse_genomes_project 3 143639690 143643535 + TEC TEC MGP_C57BL6NJ_T0101610.1 MGP_C57BL6NJ_G0039656.1 mouse_genomes_project 3 122706245 122706342 + Gm26358 snoRNA snoRNA MGP_C57BL6NJ_T0014514.1 MGP_C57BL6NJ_G0012559.1 mouse_genomes_project 3 94815921 94816224 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100285.1 MGP_C57BL6NJ_G0038331.1 mouse_genomes_project 3 96987462 96987564 - Gm24481 snRNA snRNA MGP_C57BL6NJ_T0063886.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 124986040 125960411 + MGP_C57BL6NJ_P0063886 Dpyd protein_coding protein_coding MGP_C57BL6NJ_T0063887.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 124986041 125251130 + Dpyd protein_coding retained_intron MGP_C57BL6NJ_T0063888.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 124986088 125233374 + Dpyd protein_coding retained_intron MGP_C57BL6NJ_T0063889.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 124986091 125111810 + MGP_C57BL6NJ_P0063889 Dpyd protein_coding protein_coding MGP_C57BL6NJ_T0063890.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 124986097 124987064 + Dpyd protein_coding retained_intron MGP_C57BL6NJ_T0063891.1 MGP_C57BL6NJ_G0028241.1 mouse_genomes_project 3 125266392 125357946 + Dpyd protein_coding retained_intron MGP_C57BL6NJ_T0099396.1 MGP_C57BL6NJ_G0037453.1 mouse_genomes_project 3 105984758 105987394 - Gm43465 sense_intronic sense_intronic MGP_C57BL6NJ_T0063689.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319757 114344713 + MGP_C57BL6NJ_P0063689 Clcc1 protein_coding protein_coding MGP_C57BL6NJ_T0063690.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319793 114328589 + Clcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063691.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319801 114333586 + Clcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063692.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319802 114344709 + MGP_C57BL6NJ_P0063692 Clcc1 protein_coding protein_coding MGP_C57BL6NJ_T0063693.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319802 114329138 + MGP_C57BL6NJ_P0063693 Clcc1 protein_coding protein_coding MGP_C57BL6NJ_T0063694.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114319834 114343885 + MGP_C57BL6NJ_P0063694 Clcc1 protein_coding protein_coding MGP_C57BL6NJ_T0063695.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114328781 114334336 + Clcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063696.1 MGP_C57BL6NJ_G0028199.1 mouse_genomes_project 3 114333359 114334342 + Clcc1 protein_coding retained_intron MGP_C57BL6NJ_T0062467.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93967262 93982759 + MGP_C57BL6NJ_P0062467 Dennd4b protein_coding protein_coding MGP_C57BL6NJ_T0062468.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93968591 93982759 + MGP_C57BL6NJ_P0062468 Dennd4b protein_coding protein_coding MGP_C57BL6NJ_T0062469.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93969538 93977734 + MGP_C57BL6NJ_P0062469 Dennd4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062470.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93971093 93973775 + MGP_C57BL6NJ_P0062470 Dennd4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062471.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93977551 93979568 + MGP_C57BL6NJ_P0062471 Dennd4b protein_coding protein_coding MGP_C57BL6NJ_T0062472.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93979492 93980433 + Dennd4b protein_coding retained_intron MGP_C57BL6NJ_T0062473.1 MGP_C57BL6NJ_G0027879.1 mouse_genomes_project 3 93980097 93980760 + Dennd4b protein_coding retained_intron MGP_C57BL6NJ_T0007755.1 MGP_C57BL6NJ_G0006346.1 mouse_genomes_project 3 82288139 82292641 + 4930589L23Rik lincRNA lincRNA MGP_C57BL6NJ_T0064536.1 MGP_C57BL6NJ_G0028357.1 mouse_genomes_project 3 150863135 150889737 + MGP_C57BL6NJ_P0064536 Gbp2b protein_coding protein_coding MGP_C57BL6NJ_T0062072.1 MGP_C57BL6NJ_G0027818.1 mouse_genomes_project 3 91999739 92009865 + MGP_C57BL6NJ_P0062072 Mex3a protein_coding protein_coding MGP_C57BL6NJ_T0062620.1 MGP_C57BL6NJ_G0027952.1 mouse_genomes_project 3 97533725 97536952 + MGP_C57BL6NJ_P0062620 Tchhl1 protein_coding protein_coding MGP_C57BL6NJ_T0014564.1 MGP_C57BL6NJ_G0012609.1 mouse_genomes_project 3 106248351 106248788 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014347.1 MGP_C57BL6NJ_G0012392.1 mouse_genomes_project 3 41652910 41656556 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099431.1 MGP_C57BL6NJ_G0037488.1 mouse_genomes_project 3 111108742 111110176 - Gm43328 sense_intronic sense_intronic MGP_C57BL6NJ_T0004412.1 MGP_C57BL6NJ_G0003873.1 mouse_genomes_project 3 81913054 81957525 + 4921511C10Rik antisense antisense MGP_C57BL6NJ_T0064678.1 MGP_C57BL6NJ_G0028388.1 mouse_genomes_project 3 155050725 155066446 - MGP_C57BL6NJ_P0064678 Rpf1 protein_coding protein_coding MGP_C57BL6NJ_T0064679.1 MGP_C57BL6NJ_G0028388.1 mouse_genomes_project 3 155051113 155053112 - MGP_C57BL6NJ_P0064679 Rpf1 protein_coding protein_coding MGP_C57BL6NJ_T0064680.1 MGP_C57BL6NJ_G0028388.1 mouse_genomes_project 3 155051192 155053380 - Rpf1 protein_coding retained_intron MGP_C57BL6NJ_T0064681.1 MGP_C57BL6NJ_G0028388.1 mouse_genomes_project 3 155053060 155066068 - Rpf1 protein_coding processed_transcript MGP_C57BL6NJ_T0064682.1 MGP_C57BL6NJ_G0028388.1 mouse_genomes_project 3 155055682 155066428 - MGP_C57BL6NJ_P0064682 Rpf1 protein_coding protein_coding MGP_C57BL6NJ_T0061866.1 MGP_C57BL6NJ_G0027776.1 mouse_genomes_project 3 90286472 90292851 - MGP_C57BL6NJ_P0061866 protein_coding protein_coding MGP_C57BL6NJ_T0061868.1 MGP_C57BL6NJ_G0027776.1 mouse_genomes_project 3 90288756 90292364 - protein_coding retained_intron MGP_C57BL6NJ_T0061869.1 MGP_C57BL6NJ_G0027776.1 mouse_genomes_project 3 90289027 90292751 - protein_coding retained_intron MGP_C57BL6NJ_T0018412.1 MGP_C57BL6NJ_G0015894.1 mouse_genomes_project 3 36797817 36892046 + Gm43439 processed_transcript processed_transcript MGP_C57BL6NJ_T0062874.1 MGP_C57BL6NJ_G0028004.1 mouse_genomes_project 3 99797786 99809616 + MGP_C57BL6NJ_P0062874 Ctsk protein_coding protein_coding MGP_C57BL6NJ_T0004550.1 MGP_C57BL6NJ_G0003963.1 mouse_genomes_project 3 153167885 153173058 + antisense antisense MGP_C57BL6NJ_T0014718.1 MGP_C57BL6NJ_G0012763.1 mouse_genomes_project 3 160939622 160940100 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007693.1 MGP_C57BL6NJ_G0006301.1 mouse_genomes_project 3 40791797 40801411 - Gm42784 lincRNA lincRNA MGP_C57BL6NJ_T0103075.1 MGP_C57BL6NJ_G0040869.1 mouse_genomes_project 3 65930397 65932699 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0064028.1 MGP_C57BL6NJ_G0028265.1 mouse_genomes_project 3 130223335 130241822 - MGP_C57BL6NJ_P0064028 Mettl14 protein_coding protein_coding MGP_C57BL6NJ_T0064029.1 MGP_C57BL6NJ_G0028265.1 mouse_genomes_project 3 130223335 130241999 - MGP_C57BL6NJ_P0064029 Mettl14 protein_coding protein_coding MGP_C57BL6NJ_T0064030.1 MGP_C57BL6NJ_G0028265.1 mouse_genomes_project 3 130223335 130241876 - MGP_C57BL6NJ_P0064030 Mettl14 protein_coding protein_coding MGP_C57BL6NJ_T0064031.1 MGP_C57BL6NJ_G0028265.1 mouse_genomes_project 3 130224510 130229459 - MGP_C57BL6NJ_P0064031 Mettl14 protein_coding protein_coding MGP_C57BL6NJ_T0064032.1 MGP_C57BL6NJ_G0028265.1 mouse_genomes_project 3 130241607 130241989 - Mettl14 protein_coding retained_intron MGP_C57BL6NJ_T0007871.1 MGP_C57BL6NJ_G0006436.1 mouse_genomes_project 3 138205694 138206679 + Gm42997 lincRNA lincRNA MGP_C57BL6NJ_T0007872.1 MGP_C57BL6NJ_G0006436.1 mouse_genomes_project 3 138205835 138246839 + Gm42997 lincRNA lincRNA MGP_C57BL6NJ_T0014604.1 MGP_C57BL6NJ_G0012649.1 mouse_genomes_project 3 118241940 118242802 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062363.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93580146 93604190 - MGP_C57BL6NJ_P0062363 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062364.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93580146 93601311 - MGP_C57BL6NJ_P0062364 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062365.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93580154 93594047 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062366.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93580821 93603961 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062367.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93581514 93604190 - MGP_C57BL6NJ_P0062367 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062368.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93581862 93584423 - MGP_C57BL6NJ_P0062368 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062369.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93584379 93586429 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062370.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93585853 93587138 - MGP_C57BL6NJ_P0062370 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062371.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93586705 93587221 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062372.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93587101 93588017 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062373.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93587128 93589084 - MGP_C57BL6NJ_P0062373 Atp8b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062374.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93587192 93589214 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062375.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93589226 93591135 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062376.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93594520 93595321 - Atp8b2 protein_coding retained_intron MGP_C57BL6NJ_T0062377.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93594951 93600236 - MGP_C57BL6NJ_P0062377 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062378.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93598688 93603796 - MGP_C57BL6NJ_P0062378 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0062379.1 MGP_C57BL6NJ_G0027868.1 mouse_genomes_project 3 93599235 93602497 - MGP_C57BL6NJ_P0062379 Atp8b2 protein_coding protein_coding MGP_C57BL6NJ_T0007887.1 MGP_C57BL6NJ_G0006450.1 mouse_genomes_project 3 141798699 141812073 + Gm43194 lincRNA lincRNA MGP_C57BL6NJ_T0007888.1 MGP_C57BL6NJ_G0006450.1 mouse_genomes_project 3 141798837 141813570 + Gm43194 lincRNA lincRNA MGP_C57BL6NJ_T0001319.1 MGP_C57BL6NJ_G0001222.1 mouse_genomes_project 3 51967263 51969760 - TEC TEC MGP_C57BL6NJ_T0007906.1 MGP_C57BL6NJ_G0006467.1 mouse_genomes_project 3 151315564 151334834 + 4930519L02Rik lincRNA lincRNA MGP_C57BL6NJ_T0061457.1 MGP_C57BL6NJ_G0027679.1 mouse_genomes_project 3 63792377 63881831 - MGP_C57BL6NJ_P0061457 Gpr149 protein_coding protein_coding MGP_C57BL6NJ_T0061458.1 MGP_C57BL6NJ_G0027679.1 mouse_genomes_project 3 63866760 63879463 - Gpr149 protein_coding retained_intron MGP_C57BL6NJ_T0101592.1 MGP_C57BL6NJ_G0039638.1 mouse_genomes_project 3 92190107 92190242 + Gm25945 snoRNA snoRNA MGP_C57BL6NJ_T0062622.1 MGP_C57BL6NJ_G0027954.1 mouse_genomes_project 3 97637876 97647436 + MGP_C57BL6NJ_P0062622 S100a10 protein_coding protein_coding MGP_C57BL6NJ_T0062623.1 MGP_C57BL6NJ_G0027954.1 mouse_genomes_project 3 97637959 97644301 + S100a10 protein_coding retained_intron MGP_C57BL6NJ_T0062624.1 MGP_C57BL6NJ_G0027954.1 mouse_genomes_project 3 97643522 97647243 + MGP_C57BL6NJ_P0062624 S100a10 protein_coding protein_coding MGP_C57BL6NJ_T0014323.1 MGP_C57BL6NJ_G0012368.1 mouse_genomes_project 3 35837788 35838287 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004538.1 MGP_C57BL6NJ_G0003955.1 mouse_genomes_project 3 145751819 145753605 - Gm43403 antisense antisense MGP_C57BL6NJ_T0004539.1 MGP_C57BL6NJ_G0003955.1 mouse_genomes_project 3 145752917 145753414 - Gm43403 antisense antisense MGP_C57BL6NJ_T0063384.1 MGP_C57BL6NJ_G0028121.1 mouse_genomes_project 3 109215948 109439940 - MGP_C57BL6NJ_P0063384 Magi3 protein_coding protein_coding MGP_C57BL6NJ_T0063385.1 MGP_C57BL6NJ_G0028121.1 mouse_genomes_project 3 109216314 109438944 - MGP_C57BL6NJ_P0063385 Magi3 protein_coding protein_coding MGP_C57BL6NJ_T0063386.1 MGP_C57BL6NJ_G0028121.1 mouse_genomes_project 3 109219158 109439804 - MGP_C57BL6NJ_P0063386 Magi3 protein_coding protein_coding MGP_C57BL6NJ_T0063387.1 MGP_C57BL6NJ_G0028121.1 mouse_genomes_project 3 109271256 109273061 - Magi3 protein_coding retained_intron MGP_C57BL6NJ_T0014731.1 MGP_C57BL6NJ_G0012776.1 mouse_genomes_project 3 168465909 168466906 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063795.1 MGP_C57BL6NJ_G0028221.1 mouse_genomes_project 3 122141735 122145772 - Slc30a7 protein_coding processed_transcript MGP_C57BL6NJ_T0063796.1 MGP_C57BL6NJ_G0028221.1 mouse_genomes_project 3 122141735 122212873 - MGP_C57BL6NJ_P0063796 Slc30a7 protein_coding protein_coding MGP_C57BL6NJ_T0063797.1 MGP_C57BL6NJ_G0028221.1 mouse_genomes_project 3 122189183 122198126 - Slc30a7 protein_coding processed_transcript MGP_C57BL6NJ_T0063798.1 MGP_C57BL6NJ_G0028221.1 mouse_genomes_project 3 122197128 122199338 - Slc30a7 protein_coding retained_intron MGP_C57BL6NJ_T0061926.1 MGP_C57BL6NJ_G0027789.1 mouse_genomes_project 3 91207415 91213432 + MGP_C57BL6NJ_P0061926 Sh2d2a protein_coding protein_coding MGP_C57BL6NJ_T0061927.1 MGP_C57BL6NJ_G0027789.1 mouse_genomes_project 3 91207665 91216371 + MGP_C57BL6NJ_P0061927 Sh2d2a protein_coding protein_coding MGP_C57BL6NJ_T0061928.1 MGP_C57BL6NJ_G0027789.1 mouse_genomes_project 3 91207671 91210597 + Sh2d2a protein_coding retained_intron MGP_C57BL6NJ_T0001502.1 MGP_C57BL6NJ_G0001402.1 mouse_genomes_project 3 145788254 145790601 + TEC TEC MGP_C57BL6NJ_T0063493.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 111991233 112041259 - MGP_C57BL6NJ_P0063493 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0063494.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 111991956 112041188 - MGP_C57BL6NJ_P0063494 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0063495.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 111991956 112041039 - MGP_C57BL6NJ_P0063495 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0063496.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 111994227 112041156 - MGP_C57BL6NJ_P0063496 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0063497.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 112010991 112041200 - MGP_C57BL6NJ_P0063497 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0063498.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 112023462 112041175 - MGP_C57BL6NJ_P0063498 Cept1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063499.1 MGP_C57BL6NJ_G0028150.1 mouse_genomes_project 3 112032805 112041049 - MGP_C57BL6NJ_P0063499 Cept1 protein_coding protein_coding MGP_C57BL6NJ_T0062587.1 MGP_C57BL6NJ_G0027928.1 mouse_genomes_project 3 96680916 96683824 + MGP_C57BL6NJ_P0062587 Lce1c protein_coding protein_coding MGP_C57BL6NJ_T0014694.1 MGP_C57BL6NJ_G0012739.1 mouse_genomes_project 3 148180192 148181573 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001343.1 MGP_C57BL6NJ_G0001244.1 mouse_genomes_project 3 53693942 53694766 + TEC TEC MGP_C57BL6NJ_T0100238.1 MGP_C57BL6NJ_G0038284.1 mouse_genomes_project 3 14912261 14912325 - Gm26485 snRNA snRNA MGP_C57BL6NJ_T0063934.1 MGP_C57BL6NJ_G0028247.1 mouse_genomes_project 3 128134054 128135438 - Slc44a3 protein_coding processed_transcript MGP_C57BL6NJ_T0063935.1 MGP_C57BL6NJ_G0028247.1 mouse_genomes_project 3 128134054 128214466 - MGP_C57BL6NJ_P0063935 Slc44a3 protein_coding protein_coding MGP_C57BL6NJ_T0063936.1 MGP_C57BL6NJ_G0028247.1 mouse_genomes_project 3 128164940 128209271 - MGP_C57BL6NJ_P0063936 Slc44a3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063937.1 MGP_C57BL6NJ_G0028247.1 mouse_genomes_project 3 128201305 128209181 - Slc44a3 protein_coding processed_transcript MGP_C57BL6NJ_T0014417.1 MGP_C57BL6NJ_G0012462.1 mouse_genomes_project 3 62594480 62594975 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014322.1 MGP_C57BL6NJ_G0012367.1 mouse_genomes_project 3 35641451 35642394 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103125.1 MGP_C57BL6NJ_G0040919.1 mouse_genomes_project 3 164745414 164746285 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100316.1 MGP_C57BL6NJ_G0038362.1 mouse_genomes_project 3 145804100 145804199 - Gm25920 snRNA snRNA MGP_C57BL6NJ_T0014598.1 MGP_C57BL6NJ_G0012643.1 mouse_genomes_project 3 116331880 116332214 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064692.1 MGP_C57BL6NJ_G0028392.1 mouse_genomes_project 3 155202772 155254458 - MGP_C57BL6NJ_P0064692 Samd13 protein_coding protein_coding MGP_C57BL6NJ_T0064693.1 MGP_C57BL6NJ_G0028392.1 mouse_genomes_project 3 155203669 155251280 - MGP_C57BL6NJ_P0064693 Samd13 protein_coding protein_coding MGP_C57BL6NJ_T0064694.1 MGP_C57BL6NJ_G0028392.1 mouse_genomes_project 3 155203680 155251392 - MGP_C57BL6NJ_P0064694 Samd13 protein_coding protein_coding MGP_C57BL6NJ_T0064695.1 MGP_C57BL6NJ_G0028392.1 mouse_genomes_project 3 155203765 155254341 - MGP_C57BL6NJ_P0064695 Samd13 protein_coding protein_coding MGP_C57BL6NJ_T0064698.1 MGP_C57BL6NJ_G0028392.1 mouse_genomes_project 3 155249207 155254337 - Samd13 protein_coding retained_intron MGP_C57BL6NJ_T0007922.1 MGP_C57BL6NJ_G0006481.1 mouse_genomes_project 3 152251963 152252868 + Gm42708 lincRNA lincRNA MGP_C57BL6NJ_T0063521.1 MGP_C57BL6NJ_G0028153.1 mouse_genomes_project 3 112265218 112305324 - MGP_C57BL6NJ_P0063521 Cd53 protein_coding protein_coding MGP_C57BL6NJ_T0001526.1 MGP_C57BL6NJ_G0001426.1 mouse_genomes_project 3 165992594 165995155 + TEC TEC MGP_C57BL6NJ_T0001471.1 MGP_C57BL6NJ_G0001372.1 mouse_genomes_project 3 134923466 134925860 - TEC TEC MGP_C57BL6NJ_T0014318.1 MGP_C57BL6NJ_G0012363.1 mouse_genomes_project 3 34896889 34897808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060638.1 MGP_C57BL6NJ_G0027522.1 mouse_genomes_project 3 22188454 23284530 - MGP_C57BL6NJ_P0060638 Naaladl2 protein_coding protein_coding MGP_C57BL6NJ_T0060639.1 MGP_C57BL6NJ_G0027522.1 mouse_genomes_project 3 22194687 22346369 - Naaladl2 protein_coding processed_transcript MGP_C57BL6NJ_T0060640.1 MGP_C57BL6NJ_G0027522.1 mouse_genomes_project 3 22195337 22382406 - Naaladl2 protein_coding processed_transcript MGP_C57BL6NJ_T0060641.1 MGP_C57BL6NJ_G0027522.1 mouse_genomes_project 3 23024154 23660347 - Naaladl2 protein_coding retained_intron MGP_C57BL6NJ_T0103102.1 MGP_C57BL6NJ_G0040896.1 mouse_genomes_project 3 98420295 98422210 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101615.1 MGP_C57BL6NJ_G0039661.1 mouse_genomes_project 3 134132135 134132267 + Gm25501 snoRNA snoRNA MGP_C57BL6NJ_T0007830.1 MGP_C57BL6NJ_G0006404.1 mouse_genomes_project 3 112638445 112647866 + A930002I21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007831.1 MGP_C57BL6NJ_G0006404.1 mouse_genomes_project 3 112638447 112646685 + A930002I21Rik lincRNA lincRNA MGP_C57BL6NJ_T0062151.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92451760 92453668 - Dap3 protein_coding retained_intron MGP_C57BL6NJ_T0062152.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92451760 92478352 - MGP_C57BL6NJ_P0062152 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062153.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92451887 92459111 - MGP_C57BL6NJ_P0062153 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062154.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92451923 92459144 - MGP_C57BL6NJ_P0062154 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062155.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92451953 92478271 - MGP_C57BL6NJ_P0062155 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062156.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92456599 92478699 - MGP_C57BL6NJ_P0062156 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062157.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92456633 92479509 - MGP_C57BL6NJ_P0062157 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062158.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92457568 92478672 - MGP_C57BL6NJ_P0062158 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062159.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92457616 92478307 - MGP_C57BL6NJ_P0062159 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062160.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92462003 92466922 - MGP_C57BL6NJ_P0062160 Dap3 protein_coding protein_coding MGP_C57BL6NJ_T0062161.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92477453 92479438 - Dap3 protein_coding processed_transcript MGP_C57BL6NJ_T0062163.1 MGP_C57BL6NJ_G0027830.1 mouse_genomes_project 3 92479044 92479510 - Dap3 protein_coding processed_transcript MGP_C57BL6NJ_T0001302.1 MGP_C57BL6NJ_G0001205.1 mouse_genomes_project 3 45254690 45257646 - TEC TEC MGP_C57BL6NJ_T0061765.1 MGP_C57BL6NJ_G0027752.1 mouse_genomes_project 3 85981721 85991444 - MGP_C57BL6NJ_P0061765 Fgb protein_coding protein_coding MGP_C57BL6NJ_T0014327.1 MGP_C57BL6NJ_G0012372.1 mouse_genomes_project 3 36279304 36279911 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014610.1 MGP_C57BL6NJ_G0012655.1 mouse_genomes_project 3 119773628 119773886 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014385.1 MGP_C57BL6NJ_G0012430.1 mouse_genomes_project 3 54014548 54014953 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001492.1 MGP_C57BL6NJ_G0001392.1 mouse_genomes_project 3 140594716 140596490 - TEC TEC MGP_C57BL6NJ_T0004437.1 MGP_C57BL6NJ_G0003890.1 mouse_genomes_project 3 93550413 93551551 + Gm42809 antisense antisense MGP_C57BL6NJ_T0014526.1 MGP_C57BL6NJ_G0012571.1 mouse_genomes_project 3 97484530 97485313 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103104.1 MGP_C57BL6NJ_G0040898.1 mouse_genomes_project 3 98420295 98422284 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0062123.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167661 92195874 + MGP_C57BL6NJ_P0062123 2810403A07Rik protein_coding protein_coding MGP_C57BL6NJ_T0062124.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167672 92169921 + 2810403A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0062125.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167685 92195804 + MGP_C57BL6NJ_P0062125 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062126.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167685 92195512 + MGP_C57BL6NJ_P0062126 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062127.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167691 92183221 + 2810403A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0062128.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92167695 92194953 + MGP_C57BL6NJ_P0062128 2810403A07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062129.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92175082 92191858 + 2810403A07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0062130.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92180446 92182524 + 2810403A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0062131.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92181247 92191937 + 2810403A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0062132.1 MGP_C57BL6NJ_G0027825.1 mouse_genomes_project 3 92191729 92194034 + 2810403A07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0100297.1 MGP_C57BL6NJ_G0038343.1 mouse_genomes_project 3 108607615 108607719 - Gm25199 snRNA snRNA MGP_C57BL6NJ_T0062863.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729365 99788510 + Arnt protein_coding retained_intron MGP_C57BL6NJ_T0062864.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729365 99792455 + MGP_C57BL6NJ_P0062864 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062865.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729367 99794128 + MGP_C57BL6NJ_P0062865 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062866.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729381 99794125 + MGP_C57BL6NJ_P0062866 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062867.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729405 99757211 + MGP_C57BL6NJ_P0062867 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062868.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729405 99792459 + MGP_C57BL6NJ_P0062868 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062869.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99729496 99789578 + Arnt protein_coding retained_intron MGP_C57BL6NJ_T0062870.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99762630 99792455 + Arnt protein_coding retained_intron MGP_C57BL6NJ_T0062871.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99770160 99776277 + Arnt protein_coding retained_intron MGP_C57BL6NJ_T0062872.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99772147 99783321 + MGP_C57BL6NJ_P0062872 Arnt protein_coding protein_coding MGP_C57BL6NJ_T0062873.1 MGP_C57BL6NJ_G0028003.1 mouse_genomes_project 3 99785414 99786416 + Arnt protein_coding retained_intron MGP_C57BL6NJ_T0062392.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93647766 93706085 - MGP_C57BL6NJ_P0062392 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062393.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93647766 93706075 - MGP_C57BL6NJ_P0062393 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062394.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93647914 93706095 - MGP_C57BL6NJ_P0062394 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062395.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93647919 93706082 - MGP_C57BL6NJ_P0062395 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062396.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93648439 93650916 - MGP_C57BL6NJ_P0062396 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062397.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93650025 93651413 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062398.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93653620 93706072 - MGP_C57BL6NJ_P0062398 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062399.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93653845 93674443 - MGP_C57BL6NJ_P0062399 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062400.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93653846 93706135 - MGP_C57BL6NJ_P0062400 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062401.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93653846 93706092 - MGP_C57BL6NJ_P0062401 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062402.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93661822 93669448 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062403.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93661995 93673740 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062404.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93668172 93705951 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062405.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93669294 93670780 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062406.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93669706 93671647 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062407.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93673396 93681044 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062408.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93675182 93677036 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062409.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93690081 93692477 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062410.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93692600 93705702 - MGP_C57BL6NJ_P0062410 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062411.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93695416 93706122 - Ubap2l protein_coding retained_intron MGP_C57BL6NJ_T0062412.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93697356 93706248 - MGP_C57BL6NJ_P0062412 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062413.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93697426 93706058 - MGP_C57BL6NJ_P0062413 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0062414.1 MGP_C57BL6NJ_G0027870.1 mouse_genomes_project 3 93698490 93701920 - MGP_C57BL6NJ_P0062414 Ubap2l protein_coding protein_coding MGP_C57BL6NJ_T0014587.1 MGP_C57BL6NJ_G0012632.1 mouse_genomes_project 3 113595794 113596031 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001402.1 MGP_C57BL6NJ_G0001303.1 mouse_genomes_project 3 101176269 101177064 - TEC TEC MGP_C57BL6NJ_T0100286.1 MGP_C57BL6NJ_G0038332.1 mouse_genomes_project 3 96992686 96992795 - Gm22577 snRNA snRNA MGP_C57BL6NJ_T0004503.1 MGP_C57BL6NJ_G0003928.1 mouse_genomes_project 3 116011154 116014846 + C130013H08Rik antisense antisense MGP_C57BL6NJ_T0014307.1 MGP_C57BL6NJ_G0012352.1 mouse_genomes_project 3 28880960 28881399 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061142.1 MGP_C57BL6NJ_G0027609.1 mouse_genomes_project 3 50151593 50165599 - MGP_C57BL6NJ_P0061142 Pcdh18 protein_coding protein_coding MGP_C57BL6NJ_T0061143.1 MGP_C57BL6NJ_G0027609.1 mouse_genomes_project 3 50151595 50165568 - MGP_C57BL6NJ_P0061143 Pcdh18 protein_coding protein_coding MGP_C57BL6NJ_T0061144.1 MGP_C57BL6NJ_G0027609.1 mouse_genomes_project 3 50153568 50165608 - Pcdh18 protein_coding processed_transcript MGP_C57BL6NJ_T0061145.1 MGP_C57BL6NJ_G0027609.1 mouse_genomes_project 3 50160703 50163747 - MGP_C57BL6NJ_P0061145 Pcdh18 protein_coding protein_coding MGP_C57BL6NJ_T0061146.1 MGP_C57BL6NJ_G0027609.1 mouse_genomes_project 3 50163108 50165566 - Pcdh18 protein_coding processed_transcript MGP_C57BL6NJ_T0061492.1 MGP_C57BL6NJ_G0027688.1 mouse_genomes_project 3 65722161 65725258 - MGP_C57BL6NJ_P0061492 protein_coding protein_coding MGP_C57BL6NJ_T0001330.1 MGP_C57BL6NJ_G0001232.1 mouse_genomes_project 3 52401008 52403624 - TEC TEC MGP_C57BL6NJ_T0099380.1 MGP_C57BL6NJ_G0037438.1 mouse_genomes_project 3 82269882 82272130 - sense_intronic sense_intronic MGP_C57BL6NJ_T0063252.1 MGP_C57BL6NJ_G0028098.1 mouse_genomes_project 3 107810792 107844705 + MGP_C57BL6NJ_P0063252 Tspan2 protein_coding protein_coding MGP_C57BL6NJ_T0063253.1 MGP_C57BL6NJ_G0028098.1 mouse_genomes_project 3 107811010 107844968 + MGP_C57BL6NJ_P0063253 Tspan2 protein_coding protein_coding MGP_C57BL6NJ_T0063254.1 MGP_C57BL6NJ_G0028098.1 mouse_genomes_project 3 107835072 107889875 + MGP_C57BL6NJ_P0063254 Tspan2 protein_coding protein_coding MGP_C57BL6NJ_T0064675.1 MGP_C57BL6NJ_G0028387.1 mouse_genomes_project 3 155043500 155049144 + MGP_C57BL6NJ_P0064675 Gng5 protein_coding protein_coding MGP_C57BL6NJ_T0064676.1 MGP_C57BL6NJ_G0028387.1 mouse_genomes_project 3 155043583 155050317 + MGP_C57BL6NJ_P0064676 Gng5 protein_coding protein_coding MGP_C57BL6NJ_T0064677.1 MGP_C57BL6NJ_G0028387.1 mouse_genomes_project 3 155043802 155050318 + MGP_C57BL6NJ_P0064677 Gng5 protein_coding protein_coding MGP_C57BL6NJ_T0007848.1 MGP_C57BL6NJ_G0006420.1 mouse_genomes_project 3 124844570 124845798 + Gm9916 lincRNA lincRNA MGP_C57BL6NJ_T0064403.1 MGP_C57BL6NJ_G0028329.1 mouse_genomes_project 3 145507125 145511925 + MGP_C57BL6NJ_P0064403 Ddit4l protein_coding protein_coding MGP_C57BL6NJ_T0064404.1 MGP_C57BL6NJ_G0028329.1 mouse_genomes_project 3 145507490 145509731 + MGP_C57BL6NJ_P0064404 Ddit4l protein_coding protein_coding MGP_C57BL6NJ_T0014469.1 MGP_C57BL6NJ_G0012514.1 mouse_genomes_project 3 76611481 76611811 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007666.1 MGP_C57BL6NJ_G0006282.1 mouse_genomes_project 3 33832109 33839041 - Gm42695 lincRNA lincRNA MGP_C57BL6NJ_T0061736.1 MGP_C57BL6NJ_G0027743.1 mouse_genomes_project 3 84883623 84900800 + Asic5 protein_coding processed_transcript MGP_C57BL6NJ_T0061737.1 MGP_C57BL6NJ_G0027743.1 mouse_genomes_project 3 84898047 84922881 + MGP_C57BL6NJ_P0061737 Asic5 protein_coding protein_coding MGP_C57BL6NJ_T0101605.1 MGP_C57BL6NJ_G0039651.1 mouse_genomes_project 3 114097984 114098108 + Gm22942 snoRNA snoRNA MGP_C57BL6NJ_T0064333.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060618 143085990 + MGP_C57BL6NJ_P0064333 Slc9b1 protein_coding protein_coding MGP_C57BL6NJ_T0064334.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060623 143113506 + MGP_C57BL6NJ_P0064334 Slc9b1 protein_coding protein_coding MGP_C57BL6NJ_T0064335.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060635 143072387 + Slc9b1 protein_coding retained_intron MGP_C57BL6NJ_T0064336.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060635 143072626 + Slc9b1 protein_coding retained_intron MGP_C57BL6NJ_T0064337.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060647 143108762 + Slc9b1 protein_coding processed_transcript MGP_C57BL6NJ_T0064338.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143060919 143090632 + Slc9b1 protein_coding retained_intron MGP_C57BL6NJ_T0064339.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143088894 143090398 + Slc9b1 protein_coding retained_intron MGP_C57BL6NJ_T0064340.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143098680 143113503 + MGP_C57BL6NJ_P0064340 Slc9b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064341.1 MGP_C57BL6NJ_G0028319.1 mouse_genomes_project 3 143109682 143113503 + Slc9b1 protein_coding processed_transcript MGP_C57BL6NJ_T0062415.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93705255 93715934 + MGP_C57BL6NJ_P0062415 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0062416.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706633 93717257 + MGP_C57BL6NJ_P0062416 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0062417.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706648 93712030 + 4933434E20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0062418.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706656 93712476 + MGP_C57BL6NJ_P0062418 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0062419.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706661 93714910 + MGP_C57BL6NJ_P0062419 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0062420.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706673 93707504 + 4933434E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0062421.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706690 93716358 + MGP_C57BL6NJ_P0062421 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0062422.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93706690 93716361 + MGP_C57BL6NJ_P0062422 4933434E20Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062423.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93707404 93712246 + 4933434E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0062424.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93712023 93716212 + 4933434E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0062425.1 MGP_C57BL6NJ_G0027871.1 mouse_genomes_project 3 93716711 93722261 + MGP_C57BL6NJ_P0062425 4933434E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0099384.1 MGP_C57BL6NJ_G0037441.1 mouse_genomes_project 3 98577393 98582279 + Gm42463 sense_intronic sense_intronic MGP_C57BL6NJ_T0014473.1 MGP_C57BL6NJ_G0012518.1 mouse_genomes_project 3 78509549 78510340 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014554.1 MGP_C57BL6NJ_G0012599.1 mouse_genomes_project 3 104285265 104286095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010759.1 MGP_C57BL6NJ_G0008844.1 mouse_genomes_project 3 91612865 91612952 + Mir3093 miRNA miRNA MGP_C57BL6NJ_T0063992.1 MGP_C57BL6NJ_G0028257.1 mouse_genomes_project 3 129541002 129687993 + MGP_C57BL6NJ_P0063992 Pde5a protein_coding protein_coding MGP_C57BL6NJ_T0063993.1 MGP_C57BL6NJ_G0028257.1 mouse_genomes_project 3 129541625 129687991 + MGP_C57BL6NJ_P0063993 Pde5a protein_coding protein_coding MGP_C57BL6NJ_T0063994.1 MGP_C57BL6NJ_G0028257.1 mouse_genomes_project 3 129542277 129591638 + Pde5a protein_coding retained_intron MGP_C57BL6NJ_T0010743.1 MGP_C57BL6NJ_G0008828.1 mouse_genomes_project 3 33906957 33907036 + Mir1897 miRNA miRNA MGP_C57BL6NJ_T0014594.1 MGP_C57BL6NJ_G0012639.1 mouse_genomes_project 3 114897932 114898797 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018416.1 MGP_C57BL6NJ_G0015896.1 mouse_genomes_project 3 50961096 51056020 - Gm6209 processed_transcript lincRNA MGP_C57BL6NJ_T0018417.1 MGP_C57BL6NJ_G0015896.1 mouse_genomes_project 3 51027696 51033201 - Gm6209 processed_transcript retained_intron MGP_C57BL6NJ_T0063882.1 MGP_C57BL6NJ_G0028240.1 mouse_genomes_project 3 124139506 124239986 - MGP_C57BL6NJ_P0063882 Snx7 protein_coding protein_coding MGP_C57BL6NJ_T0063883.1 MGP_C57BL6NJ_G0028240.1 mouse_genomes_project 3 124139811 124211068 - MGP_C57BL6NJ_P0063883 Snx7 protein_coding protein_coding MGP_C57BL6NJ_T0063884.1 MGP_C57BL6NJ_G0028240.1 mouse_genomes_project 3 124139937 124239902 - MGP_C57BL6NJ_P0063884 Snx7 protein_coding protein_coding MGP_C57BL6NJ_T0063885.1 MGP_C57BL6NJ_G0028240.1 mouse_genomes_project 3 124190511 124194699 - Snx7 protein_coding retained_intron MGP_C57BL6NJ_T0101586.1 MGP_C57BL6NJ_G0039632.1 mouse_genomes_project 3 89319322 89319444 + Gm25188 snoRNA snoRNA MGP_C57BL6NJ_T0061550.1 MGP_C57BL6NJ_G0027699.1 mouse_genomes_project 3 69076133 69122558 + MGP_C57BL6NJ_P0061550 Gfm1 protein_coding protein_coding MGP_C57BL6NJ_T0061551.1 MGP_C57BL6NJ_G0027699.1 mouse_genomes_project 3 69076153 69104848 + Gfm1 protein_coding processed_transcript MGP_C57BL6NJ_T0061552.1 MGP_C57BL6NJ_G0027699.1 mouse_genomes_project 3 69076276 69104095 + MGP_C57BL6NJ_P0061552 Gfm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061553.1 MGP_C57BL6NJ_G0027699.1 mouse_genomes_project 3 69102521 69120833 + Gfm1 protein_coding retained_intron MGP_C57BL6NJ_T0014504.1 MGP_C57BL6NJ_G0012549.1 mouse_genomes_project 3 91342729 91343150 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014678.1 MGP_C57BL6NJ_G0012723.1 mouse_genomes_project 3 143673430 143673977 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101585.1 MGP_C57BL6NJ_G0039631.1 mouse_genomes_project 3 89162935 89163054 + Gm25876 snoRNA snoRNA MGP_C57BL6NJ_T0099421.1 MGP_C57BL6NJ_G0037478.1 mouse_genomes_project 3 109411151 109414242 - Gm43256 sense_intronic sense_intronic MGP_C57BL6NJ_T0062790.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428503 99432579 + Sema6c protein_coding processed_transcript MGP_C57BL6NJ_T0062791.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428540 99432464 + Sema6c protein_coding processed_transcript MGP_C57BL6NJ_T0062792.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428540 99441689 + MGP_C57BL6NJ_P0062792 Sema6c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062793.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428540 99436382 + MGP_C57BL6NJ_P0062793 Sema6c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062794.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428547 99432518 + MGP_C57BL6NJ_P0062794 Sema6c protein_coding protein_coding MGP_C57BL6NJ_T0062795.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428551 99442060 + Sema6c protein_coding retained_intron MGP_C57BL6NJ_T0062796.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428551 99442060 + MGP_C57BL6NJ_P0062796 Sema6c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062797.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428551 99442060 + MGP_C57BL6NJ_P0062797 Sema6c protein_coding protein_coding MGP_C57BL6NJ_T0062798.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99428678 99441324 + MGP_C57BL6NJ_P0062798 Sema6c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0062799.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99432342 99441898 + MGP_C57BL6NJ_P0062799 Sema6c protein_coding protein_coding MGP_C57BL6NJ_T0062800.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99432342 99442060 + MGP_C57BL6NJ_P0062800 Sema6c protein_coding protein_coding MGP_C57BL6NJ_T0062801.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99436247 99438176 + Sema6c protein_coding processed_transcript MGP_C57BL6NJ_T0062802.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99438358 99439931 + Sema6c protein_coding retained_intron MGP_C57BL6NJ_T0062803.1 MGP_C57BL6NJ_G0027992.1 mouse_genomes_project 3 99438840 99440012 + Sema6c protein_coding retained_intron MGP_C57BL6NJ_T0018442.1 MGP_C57BL6NJ_G0015907.1 mouse_genomes_project 3 108986409 108991719 + Gm15471 processed_transcript retained_intron MGP_C57BL6NJ_T0018443.1 MGP_C57BL6NJ_G0015907.1 mouse_genomes_project 3 108986416 108991720 + Gm15471 processed_transcript antisense MGP_C57BL6NJ_T0063644.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037273 114041613 + MGP_C57BL6NJ_P0063644 Psrc1 protein_coding protein_coding MGP_C57BL6NJ_T0063645.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037285 114038843 + Psrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063646.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037286 114040037 + Psrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063647.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037293 114041665 + MGP_C57BL6NJ_P0063647 Psrc1 protein_coding protein_coding MGP_C57BL6NJ_T0063648.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037313 114039818 + Psrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063649.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037350 114038844 + MGP_C57BL6NJ_P0063649 Psrc1 protein_coding protein_coding MGP_C57BL6NJ_T0063650.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037371 114040057 + Psrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0063651.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114037828 114039379 + Psrc1 protein_coding retained_intron MGP_C57BL6NJ_T0063652.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114038288 114040308 + Psrc1 protein_coding retained_intron MGP_C57BL6NJ_T0063653.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114038291 114040139 + Psrc1 protein_coding retained_intron MGP_C57BL6NJ_T0063654.1 MGP_C57BL6NJ_G0028191.1 mouse_genomes_project 3 114039499 114040147 + Psrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0014344.1 MGP_C57BL6NJ_G0012389.1 mouse_genomes_project 3 40449012 40449460 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099434.1 MGP_C57BL6NJ_G0037491.1 mouse_genomes_project 3 111175062 111176751 - Gm43331 sense_intronic sense_intronic MGP_C57BL6NJ_T0061892.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90957612 91044379 + Arhgef11 protein_coding retained_intron MGP_C57BL6NJ_T0061893.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90957628 91085241 + MGP_C57BL6NJ_P0061893 Arhgef11 protein_coding protein_coding MGP_C57BL6NJ_T0061894.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90957638 91083117 + MGP_C57BL6NJ_P0061894 Arhgef11 protein_coding protein_coding MGP_C57BL6NJ_T0061895.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90957645 91064610 + Arhgef11 protein_coding retained_intron MGP_C57BL6NJ_T0061896.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90957806 91084310 + MGP_C57BL6NJ_P0061896 Arhgef11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061897.1 MGP_C57BL6NJ_G0027784.1 mouse_genomes_project 3 90958154 91085242 + MGP_C57BL6NJ_P0061897 Arhgef11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062202.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757788 92763081 + MGP_C57BL6NJ_P0062202 Scamp3 protein_coding protein_coding MGP_C57BL6NJ_T0062203.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757805 92763081 + MGP_C57BL6NJ_P0062203 Scamp3 protein_coding protein_coding MGP_C57BL6NJ_T0062204.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757811 92759981 + Scamp3 protein_coding retained_intron MGP_C57BL6NJ_T0062205.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757835 92763079 + MGP_C57BL6NJ_P0062205 Scamp3 protein_coding protein_coding MGP_C57BL6NJ_T0062206.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757846 92759768 + Scamp3 protein_coding retained_intron MGP_C57BL6NJ_T0062207.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757852 92759980 + Scamp3 protein_coding retained_intron MGP_C57BL6NJ_T0062208.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92757936 92761592 + Scamp3 protein_coding retained_intron MGP_C57BL6NJ_T0062209.1 MGP_C57BL6NJ_G0027838.1 mouse_genomes_project 3 92758073 92760701 + Scamp3 protein_coding retained_intron MGP_C57BL6NJ_T0001382.1 MGP_C57BL6NJ_G0001283.1 mouse_genomes_project 3 82335486 82336775 - TEC TEC MGP_C57BL6NJ_T0004517.1 MGP_C57BL6NJ_G0003939.1 mouse_genomes_project 3 131340251 131341948 + Gm42823 antisense antisense MGP_C57BL6NJ_T0061187.1 MGP_C57BL6NJ_G0027617.1 mouse_genomes_project 3 52003004 52053577 - MGP_C57BL6NJ_P0061187 Setd7 protein_coding protein_coding MGP_C57BL6NJ_T0061188.1 MGP_C57BL6NJ_G0027617.1 mouse_genomes_project 3 52020859 52029531 - Setd7 protein_coding retained_intron MGP_C57BL6NJ_T0061189.1 MGP_C57BL6NJ_G0027617.1 mouse_genomes_project 3 52028384 52030012 - Setd7 protein_coding retained_intron MGP_C57BL6NJ_T0061190.1 MGP_C57BL6NJ_G0027617.1 mouse_genomes_project 3 52041385 52044023 - Setd7 protein_coding retained_intron MGP_C57BL6NJ_T0010731.1 MGP_C57BL6NJ_G0008816.1 mouse_genomes_project 3 94209 94309 - Gm27460 miRNA miRNA MGP_C57BL6NJ_T0014345.1 MGP_C57BL6NJ_G0012390.1 mouse_genomes_project 3 40473260 40473531 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100310.1 MGP_C57BL6NJ_G0038356.1 mouse_genomes_project 3 139387044 139387139 + Gm26103 snRNA snRNA MGP_C57BL6NJ_T0063471.1 MGP_C57BL6NJ_G0028142.1 mouse_genomes_project 3 111367514 111381218 + MGP_C57BL6NJ_P0063471 Ovgp1 protein_coding protein_coding MGP_C57BL6NJ_T0063472.1 MGP_C57BL6NJ_G0028142.1 mouse_genomes_project 3 111367886 111379910 + MGP_C57BL6NJ_P0063472 Ovgp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063473.1 MGP_C57BL6NJ_G0028142.1 mouse_genomes_project 3 111371094 111373946 + Ovgp1 protein_coding retained_intron MGP_C57BL6NJ_T0063474.1 MGP_C57BL6NJ_G0028142.1 mouse_genomes_project 3 111373921 111378624 + Ovgp1 protein_coding processed_transcript MGP_C57BL6NJ_T0001289.1 MGP_C57BL6NJ_G0001192.1 mouse_genomes_project 3 37348046 37349152 + TEC TEC MGP_C57BL6NJ_T0063398.1 MGP_C57BL6NJ_G0028124.1 mouse_genomes_project 3 110054783 110064853 - MGP_C57BL6NJ_P0063398 Fam19a3 protein_coding protein_coding MGP_C57BL6NJ_T0063399.1 MGP_C57BL6NJ_G0028124.1 mouse_genomes_project 3 110064666 110069146 - Fam19a3 protein_coding processed_transcript MGP_C57BL6NJ_T0007667.1 MGP_C57BL6NJ_G0006283.1 mouse_genomes_project 3 33865637 33869367 - Gm43207 lincRNA lincRNA MGP_C57BL6NJ_T0014562.1 MGP_C57BL6NJ_G0012607.1 mouse_genomes_project 3 106151757 106152193 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010782.1 MGP_C57BL6NJ_G0008867.1 mouse_genomes_project 3 124212912 124215062 - miRNA miRNA MGP_C57BL6NJ_T0100246.1 MGP_C57BL6NJ_G0038292.1 mouse_genomes_project 3 40611407 40611565 + Gm22043 snRNA snRNA MGP_C57BL6NJ_T0014570.1 MGP_C57BL6NJ_G0012615.1 mouse_genomes_project 3 107930848 107931256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001412.1 MGP_C57BL6NJ_G0001313.1 mouse_genomes_project 3 111962626 111965212 + TEC TEC MGP_C57BL6NJ_T0014428.1 MGP_C57BL6NJ_G0012473.1 mouse_genomes_project 3 67512776 67513200 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060432.1 MGP_C57BL6NJ_G0027466.1 mouse_genomes_project 3 4730045 4805530 + MGP_C57BL6NJ_P0060432 Pkia protein_coding protein_coding MGP_C57BL6NJ_T0060433.1 MGP_C57BL6NJ_G0027466.1 mouse_genomes_project 3 4730046 4814842 + MGP_C57BL6NJ_P0060433 Pkia protein_coding protein_coding MGP_C57BL6NJ_T0060434.1 MGP_C57BL6NJ_G0027466.1 mouse_genomes_project 3 4793904 4811889 + MGP_C57BL6NJ_P0060434 Pkia protein_coding protein_coding MGP_C57BL6NJ_T0007714.1 MGP_C57BL6NJ_G0006315.1 mouse_genomes_project 3 52734396 52736638 + Gm37170 lincRNA lincRNA MGP_C57BL6NJ_T0014440.1 MGP_C57BL6NJ_G0012485.1 mouse_genomes_project 3 69413536 69414866 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064328.1 MGP_C57BL6NJ_G0028318.1 mouse_genomes_project 3 143018871 143053699 + MGP_C57BL6NJ_P0064328 Slc9b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064329.1 MGP_C57BL6NJ_G0028318.1 mouse_genomes_project 3 143018902 143035996 + Slc9b2 protein_coding retained_intron MGP_C57BL6NJ_T0064330.1 MGP_C57BL6NJ_G0028318.1 mouse_genomes_project 3 143018913 143029530 + MGP_C57BL6NJ_P0064330 Slc9b2 protein_coding protein_coding MGP_C57BL6NJ_T0064331.1 MGP_C57BL6NJ_G0028318.1 mouse_genomes_project 3 143018916 143057977 + MGP_C57BL6NJ_P0064331 Slc9b2 protein_coding protein_coding MGP_C57BL6NJ_T0064332.1 MGP_C57BL6NJ_G0028318.1 mouse_genomes_project 3 143041469 143053931 + Slc9b2 protein_coding retained_intron MGP_C57BL6NJ_T0001461.1 MGP_C57BL6NJ_G0001362.1 mouse_genomes_project 3 134113516 134114409 - TEC TEC MGP_C57BL6NJ_T0060909.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35282568 35325207 - MGP_C57BL6NJ_P0060909 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060910.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35282878 35325158 - MGP_C57BL6NJ_P0060910 Dcun1d1 protein_coding protein_coding MGP_C57BL6NJ_T0060911.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35282904 35313570 - MGP_C57BL6NJ_P0060911 Dcun1d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060912.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35286190 35324705 - MGP_C57BL6NJ_P0060912 Dcun1d1 protein_coding protein_coding MGP_C57BL6NJ_T0060913.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35286254 35302266 - Dcun1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0060914.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35301564 35325186 - Dcun1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0060915.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35308527 35325195 - Dcun1d1 protein_coding retained_intron MGP_C57BL6NJ_T0060916.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35311379 35322490 - MGP_C57BL6NJ_P0060916 Dcun1d1 protein_coding protein_coding MGP_C57BL6NJ_T0060917.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35311382 35329810 - MGP_C57BL6NJ_P0060917 Dcun1d1 protein_coding protein_coding MGP_C57BL6NJ_T0060918.1 MGP_C57BL6NJ_G0027570.1 mouse_genomes_project 3 35320891 35323829 - Dcun1d1 protein_coding retained_intron MGP_C57BL6NJ_T0062035.1 MGP_C57BL6NJ_G0027812.1 mouse_genomes_project 3 91809202 91824765 - protein_coding retained_intron MGP_C57BL6NJ_T0062036.1 MGP_C57BL6NJ_G0027812.1 mouse_genomes_project 3 91809202 91824764 - protein_coding retained_intron MGP_C57BL6NJ_T0062038.1 MGP_C57BL6NJ_G0027812.1 mouse_genomes_project 3 91809204 91824765 - MGP_C57BL6NJ_P0062038 protein_coding protein_coding MGP_C57BL6NJ_T0062974.1 MGP_C57BL6NJ_G0028021.1 mouse_genomes_project 3 100334709 100342282 - MGP_C57BL6NJ_P0062974 Plekho1 protein_coding protein_coding MGP_C57BL6NJ_T0062975.1 MGP_C57BL6NJ_G0028021.1 mouse_genomes_project 3 100335099 100341949 - MGP_C57BL6NJ_P0062975 Plekho1 protein_coding protein_coding MGP_C57BL6NJ_T0062976.1 MGP_C57BL6NJ_G0028021.1 mouse_genomes_project 3 100335675 100342003 - MGP_C57BL6NJ_P0062976 Plekho1 protein_coding protein_coding MGP_C57BL6NJ_T0062977.1 MGP_C57BL6NJ_G0028021.1 mouse_genomes_project 3 100341615 100342079 - Plekho1 protein_coding retained_intron MGP_C57BL6NJ_T0062254.1 MGP_C57BL6NJ_G0027843.1 mouse_genomes_project 3 92817080 92821405 + MGP_C57BL6NJ_P0062254 Muc1 protein_coding protein_coding MGP_C57BL6NJ_T0062255.1 MGP_C57BL6NJ_G0027843.1 mouse_genomes_project 3 92819262 92820106 + Muc1 protein_coding processed_transcript MGP_C57BL6NJ_T0062256.1 MGP_C57BL6NJ_G0027843.1 mouse_genomes_project 3 92819494 92821221 + Muc1 protein_coding processed_transcript MGP_C57BL6NJ_T0007812.1 MGP_C57BL6NJ_G0006390.1 mouse_genomes_project 3 106673885 106681970 + Gm43135 lincRNA lincRNA MGP_C57BL6NJ_T0063589.1 MGP_C57BL6NJ_G0028175.1 mouse_genomes_project 3 113547157 113551951 - MGP_C57BL6NJ_P0063589 Gstm6 protein_coding protein_coding MGP_C57BL6NJ_T0063590.1 MGP_C57BL6NJ_G0028175.1 mouse_genomes_project 3 113547165 113552052 - MGP_C57BL6NJ_P0063590 Gstm6 protein_coding protein_coding MGP_C57BL6NJ_T0063591.1 MGP_C57BL6NJ_G0028175.1 mouse_genomes_project 3 113547423 113551701 - MGP_C57BL6NJ_P0063591 Gstm6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063592.1 MGP_C57BL6NJ_G0028175.1 mouse_genomes_project 3 113550135 113552033 - Gstm6 protein_coding processed_transcript MGP_C57BL6NJ_T0101608.1 MGP_C57BL6NJ_G0039654.1 mouse_genomes_project 3 121545625 121545757 + Gm22337 snoRNA snoRNA MGP_C57BL6NJ_T0004507.1 MGP_C57BL6NJ_G0003932.1 mouse_genomes_project 3 122890039 122890578 + Gm42457 antisense antisense MGP_C57BL6NJ_T0062499.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94201003 94213437 + Ilf2 protein_coding retained_intron MGP_C57BL6NJ_T0062500.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94201017 94204184 + Ilf2 protein_coding retained_intron MGP_C57BL6NJ_T0062501.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94201024 94207247 + Ilf2 protein_coding retained_intron MGP_C57BL6NJ_T0062502.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94201024 94213853 + MGP_C57BL6NJ_P0062502 Ilf2 protein_coding protein_coding MGP_C57BL6NJ_T0062503.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94201034 94210936 + Ilf2 protein_coding retained_intron MGP_C57BL6NJ_T0062504.1 MGP_C57BL6NJ_G0027884.1 mouse_genomes_project 3 94205556 94211862 + Ilf2 protein_coding retained_intron MGP_C57BL6NJ_T0062999.1 MGP_C57BL6NJ_G0028026.1 mouse_genomes_project 3 100544393 100562506 + MGP_C57BL6NJ_P0062999 Sv2a protein_coding protein_coding MGP_C57BL6NJ_T0063000.1 MGP_C57BL6NJ_G0028026.1 mouse_genomes_project 3 100552648 100554407 + Sv2a protein_coding retained_intron MGP_C57BL6NJ_T0063001.1 MGP_C57BL6NJ_G0028026.1 mouse_genomes_project 3 100559532 100562503 + Sv2a protein_coding processed_transcript MGP_C57BL6NJ_T0001528.1 MGP_C57BL6NJ_G0001428.1 mouse_genomes_project 3 166084170 166086914 + TEC TEC MGP_C57BL6NJ_T0004556.1 MGP_C57BL6NJ_G0003968.1 mouse_genomes_project 3 157723733 157740170 + Gm43573 antisense antisense MGP_C57BL6NJ_T0014480.1 MGP_C57BL6NJ_G0012525.1 mouse_genomes_project 3 80708159 80709723 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001514.1 MGP_C57BL6NJ_G0001414.1 mouse_genomes_project 3 161249927 161252702 - TEC TEC MGP_C57BL6NJ_T0061898.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91084130 91095853 - MGP_C57BL6NJ_P0061898 Lrrc71 protein_coding protein_coding MGP_C57BL6NJ_T0061899.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91085102 91095855 - Lrrc71 protein_coding retained_intron MGP_C57BL6NJ_T0061900.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91085153 91085774 - Lrrc71 protein_coding processed_transcript MGP_C57BL6NJ_T0061901.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91086187 91088255 - MGP_C57BL6NJ_P0061901 Lrrc71 protein_coding protein_coding MGP_C57BL6NJ_T0061902.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91086282 91095694 - MGP_C57BL6NJ_P0061902 Lrrc71 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061903.1 MGP_C57BL6NJ_G0027785.1 mouse_genomes_project 3 91092456 91095824 - Lrrc71 protein_coding retained_intron MGP_C57BL6NJ_T0063223.1 MGP_C57BL6NJ_G0028092.1 mouse_genomes_project 3 106820254 106850473 - MGP_C57BL6NJ_P0063223 Mab21l3 protein_coding protein_coding MGP_C57BL6NJ_T0063224.1 MGP_C57BL6NJ_G0028092.1 mouse_genomes_project 3 106820861 106867667 - MGP_C57BL6NJ_P0063224 Mab21l3 protein_coding protein_coding MGP_C57BL6NJ_T0011810.1 MGP_C57BL6NJ_G0009895.1 mouse_genomes_project 3 112991258 112991591 - Gm24383 misc_RNA misc_RNA MGP_C57BL6NJ_T0007879.1 MGP_C57BL6NJ_G0006442.1 mouse_genomes_project 3 139217487 139504340 + lincRNA lincRNA MGP_C57BL6NJ_T0061870.1 MGP_C57BL6NJ_G0027778.1 mouse_genomes_project 3 90378262 90478056 - MGP_C57BL6NJ_P0061870 Kirrel protein_coding protein_coding MGP_C57BL6NJ_T0061871.1 MGP_C57BL6NJ_G0027778.1 mouse_genomes_project 3 90378270 90478103 - MGP_C57BL6NJ_P0061871 Kirrel protein_coding protein_coding MGP_C57BL6NJ_T0061872.1 MGP_C57BL6NJ_G0027778.1 mouse_genomes_project 3 90384297 90477906 - MGP_C57BL6NJ_P0061872 Kirrel protein_coding protein_coding MGP_C57BL6NJ_T0061690.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82327350 82355252 - MGP_C57BL6NJ_P0061690 Etfdh protein_coding protein_coding MGP_C57BL6NJ_T0061691.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82327365 82355086 - MGP_C57BL6NJ_P0061691 Etfdh protein_coding protein_coding MGP_C57BL6NJ_T0061692.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82340730 82355072 - Etfdh protein_coding retained_intron MGP_C57BL6NJ_T0061693.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82342312 82355252 - Etfdh protein_coding retained_intron MGP_C57BL6NJ_T0061694.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82344491 82355107 - Etfdh protein_coding retained_intron MGP_C57BL6NJ_T0061695.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82354637 82355889 - Etfdh protein_coding retained_intron MGP_C57BL6NJ_T0061696.1 MGP_C57BL6NJ_G0027733.1 mouse_genomes_project 3 82354655 82355128 - Etfdh protein_coding processed_transcript MGP_C57BL6NJ_T0102487.1 MGP_C57BL6NJ_G0040360.1 mouse_genomes_project 3 61033053 61051454 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0061172.1 MGP_C57BL6NJ_G0027614.1 mouse_genomes_project 3 51882156 51887544 - MGP_C57BL6NJ_P0061172 Ndufc1 protein_coding protein_coding MGP_C57BL6NJ_T0061173.1 MGP_C57BL6NJ_G0027614.1 mouse_genomes_project 3 51882936 51886037 - Ndufc1 protein_coding retained_intron MGP_C57BL6NJ_T0061174.1 MGP_C57BL6NJ_G0027614.1 mouse_genomes_project 3 51882959 51887222 - Ndufc1 protein_coding processed_transcript MGP_C57BL6NJ_T0061175.1 MGP_C57BL6NJ_G0027614.1 mouse_genomes_project 3 51883063 51887520 - MGP_C57BL6NJ_P0061175 Ndufc1 protein_coding protein_coding MGP_C57BL6NJ_T0100251.1 MGP_C57BL6NJ_G0038297.1 mouse_genomes_project 3 53294626 53294733 - Gm22798 snRNA snRNA MGP_C57BL6NJ_T0001339.1 MGP_C57BL6NJ_G0001240.1 mouse_genomes_project 3 53652312 53655385 - TEC TEC MGP_C57BL6NJ_T0062566.1 MGP_C57BL6NJ_G0027910.1 mouse_genomes_project 3 96343880 96345136 + MGP_C57BL6NJ_P0062566 Sprr2f protein_coding protein_coding MGP_C57BL6NJ_T0014369.1 MGP_C57BL6NJ_G0012414.1 mouse_genomes_project 3 49998764 49999029 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014408.1 MGP_C57BL6NJ_G0012453.1 mouse_genomes_project 3 60767223 60767337 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001422.1 MGP_C57BL6NJ_G0001323.1 mouse_genomes_project 3 117644383 117645994 + TEC TEC MGP_C57BL6NJ_T0007943.1 MGP_C57BL6NJ_G0006496.1 mouse_genomes_project 3 159463947 159469447 + Gm43470 lincRNA lincRNA MGP_C57BL6NJ_T0007944.1 MGP_C57BL6NJ_G0006496.1 mouse_genomes_project 3 159464026 159487133 + Gm43470 lincRNA lincRNA MGP_C57BL6NJ_T0014665.1 MGP_C57BL6NJ_G0012710.1 mouse_genomes_project 3 141128154 141128429 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001445.1 MGP_C57BL6NJ_G0001346.1 mouse_genomes_project 3 130042945 130045573 - TEC TEC MGP_C57BL6NJ_T0103086.1 MGP_C57BL6NJ_G0040880.1 mouse_genomes_project 3 93804421 93804712 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001370.1 MGP_C57BL6NJ_G0001271.1 mouse_genomes_project 3 70136116 70143034 + TEC TEC MGP_C57BL6NJ_T0014360.1 MGP_C57BL6NJ_G0012405.1 mouse_genomes_project 3 46478104 46478823 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007746.1 MGP_C57BL6NJ_G0006340.1 mouse_genomes_project 3 75657150 75793558 - lincRNA lincRNA MGP_C57BL6NJ_T0014441.1 MGP_C57BL6NJ_G0012486.1 mouse_genomes_project 3 70038543 70039128 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099427.1 MGP_C57BL6NJ_G0037484.1 mouse_genomes_project 3 110116920 110118583 - Gm42658 sense_intronic sense_intronic MGP_C57BL6NJ_T0103126.1 MGP_C57BL6NJ_G0040920.1 mouse_genomes_project 3 166172279 166172754 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001368.1 MGP_C57BL6NJ_G0001269.1 mouse_genomes_project 3 67674253 67675362 + TEC TEC MGP_C57BL6NJ_T0063461.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111336479 111353903 - MGP_C57BL6NJ_P0063461 Atp5f1 protein_coding protein_coding MGP_C57BL6NJ_T0063462.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111336483 111353080 - MGP_C57BL6NJ_P0063462 Atp5f1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063463.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111336679 111347985 - MGP_C57BL6NJ_P0063463 Atp5f1 protein_coding protein_coding MGP_C57BL6NJ_T0063464.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111347472 111353068 - Atp5f1 protein_coding retained_intron MGP_C57BL6NJ_T0063465.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111347630 111349810 - Atp5f1 protein_coding retained_intron MGP_C57BL6NJ_T0063466.1 MGP_C57BL6NJ_G0028140.1 mouse_genomes_project 3 111352394 111353050 - Atp5f1 protein_coding retained_intron MGP_C57BL6NJ_T0062588.1 MGP_C57BL6NJ_G0027929.1 mouse_genomes_project 3 96688404 96690116 - MGP_C57BL6NJ_P0062588 Lce1d protein_coding protein_coding MGP_C57BL6NJ_T0064887.1 MGP_C57BL6NJ_G0028417.1 mouse_genomes_project 3 163775420 163789118 - Tyw3 protein_coding processed_transcript MGP_C57BL6NJ_T0064888.1 MGP_C57BL6NJ_G0028417.1 mouse_genomes_project 3 163775653 163791610 - MGP_C57BL6NJ_P0064888 Tyw3 protein_coding protein_coding MGP_C57BL6NJ_T0064889.1 MGP_C57BL6NJ_G0028417.1 mouse_genomes_project 3 163780221 163791688 - MGP_C57BL6NJ_P0064889 Tyw3 protein_coding protein_coding MGP_C57BL6NJ_T0061488.1 MGP_C57BL6NJ_G0027686.1 mouse_genomes_project 3 65477790 65508544 - MGP_C57BL6NJ_P0061488 Vmn2r2 protein_coding protein_coding MGP_C57BL6NJ_T0061489.1 MGP_C57BL6NJ_G0027686.1 mouse_genomes_project 3 65477790 65503454 - MGP_C57BL6NJ_P0061489 Vmn2r2 protein_coding protein_coding MGP_C57BL6NJ_T0099399.1 MGP_C57BL6NJ_G0037456.1 mouse_genomes_project 3 106544641 106545393 - Gm42937 sense_intronic sense_intronic MGP_C57BL6NJ_T0063554.1 MGP_C57BL6NJ_G0028168.1 mouse_genomes_project 3 113202873 113204423 - Strip1 protein_coding retained_intron MGP_C57BL6NJ_T0063555.1 MGP_C57BL6NJ_G0028168.1 mouse_genomes_project 3 113202873 113222036 - MGP_C57BL6NJ_P0063555 Strip1 protein_coding protein_coding MGP_C57BL6NJ_T0063556.1 MGP_C57BL6NJ_G0028168.1 mouse_genomes_project 3 113202876 113217186 - Strip1 protein_coding processed_transcript MGP_C57BL6NJ_T0063557.1 MGP_C57BL6NJ_G0028168.1 mouse_genomes_project 3 113207235 113210417 - Strip1 protein_coding processed_transcript MGP_C57BL6NJ_T0063558.1 MGP_C57BL6NJ_G0028168.1 mouse_genomes_project 3 113210793 113222036 - Strip1 protein_coding retained_intron MGP_C57BL6NJ_T0014576.1 MGP_C57BL6NJ_G0012621.1 mouse_genomes_project 3 109340251 109341089 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099417.1 MGP_C57BL6NJ_G0037474.1 mouse_genomes_project 3 109364840 109366706 - Gm43258 sense_intronic sense_intronic MGP_C57BL6NJ_T0001306.1 MGP_C57BL6NJ_G0001209.1 mouse_genomes_project 3 48344532 48344641 + TEC TEC MGP_C57BL6NJ_T0007651.1 MGP_C57BL6NJ_G0006268.1 mouse_genomes_project 3 21839021 21903302 + 4930412E21Rik lincRNA lincRNA MGP_C57BL6NJ_T0099393.1 MGP_C57BL6NJ_G0037450.1 mouse_genomes_project 3 105478418 105480539 - Gm42869 sense_intronic sense_intronic MGP_C57BL6NJ_T0014479.1 MGP_C57BL6NJ_G0012524.1 mouse_genomes_project 3 80622674 80623115 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014257.1 MGP_C57BL6NJ_G0012302.1 mouse_genomes_project 3 10402402 10402988 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001379.1 MGP_C57BL6NJ_G0001280.1 mouse_genomes_project 3 80175999 80182386 - TEC TEC MGP_C57BL6NJ_T0007832.1 MGP_C57BL6NJ_G0006405.1 mouse_genomes_project 3 113415954 113429161 - Gm36211 lincRNA lincRNA MGP_C57BL6NJ_T0063167.1 MGP_C57BL6NJ_G0028077.1 mouse_genomes_project 3 103897739 103978231 + MGP_C57BL6NJ_P0063167 Wars2 protein_coding protein_coding MGP_C57BL6NJ_T0063168.1 MGP_C57BL6NJ_G0028077.1 mouse_genomes_project 3 103897743 103977231 + MGP_C57BL6NJ_P0063168 Wars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063169.1 MGP_C57BL6NJ_G0028077.1 mouse_genomes_project 3 103897764 103997695 + MGP_C57BL6NJ_P0063169 Wars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063170.1 MGP_C57BL6NJ_G0028077.1 mouse_genomes_project 3 103897767 103974629 + MGP_C57BL6NJ_P0063170 Wars2 protein_coding protein_coding MGP_C57BL6NJ_T0063171.1 MGP_C57BL6NJ_G0028077.1 mouse_genomes_project 3 103897836 103963657 + Wars2 protein_coding retained_intron MGP_C57BL6NJ_T0100296.1 MGP_C57BL6NJ_G0038342.1 mouse_genomes_project 3 108065117 108065282 - Gm22826 snRNA snRNA MGP_C57BL6NJ_T0001521.1 MGP_C57BL6NJ_G0001421.1 mouse_genomes_project 3 162540611 162541522 - TEC TEC MGP_C57BL6NJ_T0004554.1 MGP_C57BL6NJ_G0003967.1 mouse_genomes_project 3 155199469 155209369 + Gm16325 antisense antisense MGP_C57BL6NJ_T0004555.1 MGP_C57BL6NJ_G0003967.1 mouse_genomes_project 3 155206262 155207166 + Gm16325 antisense antisense MGP_C57BL6NJ_T0063101.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101744393 101768990 - MGP_C57BL6NJ_P0063101 Bcl9 protein_coding protein_coding MGP_C57BL6NJ_T0063102.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101745359 101757231 - MGP_C57BL6NJ_P0063102 Bcl9 protein_coding protein_coding MGP_C57BL6NJ_T0063103.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101751194 101754741 - Bcl9 protein_coding processed_transcript MGP_C57BL6NJ_T0063104.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101755215 101772070 - Bcl9 protein_coding retained_intron MGP_C57BL6NJ_T0063105.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101757251 101772586 - Bcl9 protein_coding processed_transcript MGP_C57BL6NJ_T0063106.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101757276 101841184 - Bcl9 protein_coding processed_transcript MGP_C57BL6NJ_T0063107.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101757276 101769109 - Bcl9 protein_coding processed_transcript MGP_C57BL6NJ_T0063108.1 MGP_C57BL6NJ_G0028057.1 mouse_genomes_project 3 101762548 101764933 - Bcl9 protein_coding retained_intron MGP_C57BL6NJ_T0004370.1 MGP_C57BL6NJ_G0003841.1 mouse_genomes_project 3 32189575 32255493 + 4930419G24Rik antisense antisense MGP_C57BL6NJ_T0062813.1 MGP_C57BL6NJ_G0027994.1 mouse_genomes_project 3 99492998 99502541 - MGP_C57BL6NJ_P0062813 Mllt11 protein_coding protein_coding MGP_C57BL6NJ_T0062814.1 MGP_C57BL6NJ_G0027994.1 mouse_genomes_project 3 99493892 99506043 - MGP_C57BL6NJ_P0062814 Mllt11 protein_coding protein_coding MGP_C57BL6NJ_T0062815.1 MGP_C57BL6NJ_G0027994.1 mouse_genomes_project 3 99493902 99506046 - MGP_C57BL6NJ_P0062815 Mllt11 protein_coding protein_coding MGP_C57BL6NJ_T0062816.1 MGP_C57BL6NJ_G0027994.1 mouse_genomes_project 3 99501949 99504352 - Mllt11 protein_coding processed_transcript MGP_C57BL6NJ_T0062820.1 MGP_C57BL6NJ_G0027994.1 mouse_genomes_project 3 99502909 99504278 - Mllt11 protein_coding processed_transcript MGP_C57BL6NJ_T0062046.1 MGP_C57BL6NJ_G0027815.1 mouse_genomes_project 3 91865237 91879812 - MGP_C57BL6NJ_P0062046 Slc25a44 protein_coding protein_coding MGP_C57BL6NJ_T0062047.1 MGP_C57BL6NJ_G0027815.1 mouse_genomes_project 3 91865237 91879811 - MGP_C57BL6NJ_P0062047 Slc25a44 protein_coding protein_coding MGP_C57BL6NJ_T0062048.1 MGP_C57BL6NJ_G0027815.1 mouse_genomes_project 3 91865238 91879843 - MGP_C57BL6NJ_P0062048 Slc25a44 protein_coding protein_coding MGP_C57BL6NJ_T0062049.1 MGP_C57BL6NJ_G0027815.1 mouse_genomes_project 3 91865238 91879816 - MGP_C57BL6NJ_P0062049 Slc25a44 protein_coding protein_coding MGP_C57BL6NJ_T0007715.1 MGP_C57BL6NJ_G0006316.1 mouse_genomes_project 3 53079835 53114248 + Gm30173 lincRNA lincRNA MGP_C57BL6NJ_T0061642.1 MGP_C57BL6NJ_G0027724.1 mouse_genomes_project 3 77714040 77911849 - MGP_C57BL6NJ_P0061642 Wdr49 protein_coding protein_coding MGP_C57BL6NJ_T0061643.1 MGP_C57BL6NJ_G0027724.1 mouse_genomes_project 3 77833067 77883712 - MGP_C57BL6NJ_P0061643 Wdr49 protein_coding protein_coding MGP_C57BL6NJ_T0061644.1 MGP_C57BL6NJ_G0027724.1 mouse_genomes_project 3 77833067 77911850 - MGP_C57BL6NJ_P0061644 Wdr49 protein_coding protein_coding MGP_C57BL6NJ_T0061645.1 MGP_C57BL6NJ_G0027724.1 mouse_genomes_project 3 77909510 77912265 - Wdr49 protein_coding retained_intron MGP_C57BL6NJ_T0007803.1 MGP_C57BL6NJ_G0006381.1 mouse_genomes_project 3 100794119 100794687 + Gm26654 lincRNA lincRNA MGP_C57BL6NJ_T0062989.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100519671 100530189 + Mtmr11 protein_coding retained_intron MGP_C57BL6NJ_T0062990.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100519671 100530190 + MGP_C57BL6NJ_P0062990 Mtmr11 protein_coding protein_coding MGP_C57BL6NJ_T0062991.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100519752 100530190 + MGP_C57BL6NJ_P0062991 Mtmr11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062992.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100519833 100521064 + Mtmr11 protein_coding retained_intron MGP_C57BL6NJ_T0062993.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100520256 100530190 + Mtmr11 protein_coding processed_transcript MGP_C57BL6NJ_T0062994.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100527347 100528466 + Mtmr11 protein_coding processed_transcript MGP_C57BL6NJ_T0062995.1 MGP_C57BL6NJ_G0028024.1 mouse_genomes_project 3 100529057 100529942 + Mtmr11 protein_coding processed_transcript MGP_C57BL6NJ_T0004530.1 MGP_C57BL6NJ_G0003950.1 mouse_genomes_project 3 138824850 138838867 + 4930534D22Rik antisense antisense MGP_C57BL6NJ_T0100257.1 MGP_C57BL6NJ_G0038303.1 mouse_genomes_project 3 59978236 59978338 + Gm22491 snRNA snRNA MGP_C57BL6NJ_T0014565.1 MGP_C57BL6NJ_G0012610.1 mouse_genomes_project 3 107090172 107090450 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101613.1 MGP_C57BL6NJ_G0039659.1 mouse_genomes_project 3 130375156 130375286 - Snora24 snoRNA snoRNA MGP_C57BL6NJ_T0101564.1 MGP_C57BL6NJ_G0039610.1 mouse_genomes_project 3 37310498 37310607 - Gm26404 snoRNA snoRNA MGP_C57BL6NJ_T0007661.1 MGP_C57BL6NJ_G0006277.1 mouse_genomes_project 3 33237078 33239253 - Gm43077 lincRNA lincRNA MGP_C57BL6NJ_T0062082.1 MGP_C57BL6NJ_G0027821.1 mouse_genomes_project 3 92023329 92041009 + MGP_C57BL6NJ_P0062082 Ubqln4 protein_coding protein_coding MGP_C57BL6NJ_T0062083.1 MGP_C57BL6NJ_G0027821.1 mouse_genomes_project 3 92023335 92034844 + Ubqln4 protein_coding retained_intron MGP_C57BL6NJ_T0062084.1 MGP_C57BL6NJ_G0027821.1 mouse_genomes_project 3 92023367 92028100 + MGP_C57BL6NJ_P0062084 Ubqln4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062085.1 MGP_C57BL6NJ_G0027821.1 mouse_genomes_project 3 92027964 92035798 + Ubqln4 protein_coding processed_transcript MGP_C57BL6NJ_T0062086.1 MGP_C57BL6NJ_G0027821.1 mouse_genomes_project 3 92035190 92036558 + Ubqln4 protein_coding retained_intron MGP_C57BL6NJ_T0014725.1 MGP_C57BL6NJ_G0012770.1 mouse_genomes_project 3 163267213 163267664 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060959.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36021909 36067560 - MGP_C57BL6NJ_P0060959 Bbs7 protein_coding protein_coding MGP_C57BL6NJ_T0060960.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36021909 36067648 - MGP_C57BL6NJ_P0060960 Bbs7 protein_coding protein_coding MGP_C57BL6NJ_T0060961.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36023638 36067456 - MGP_C57BL6NJ_P0060961 Bbs7 protein_coding protein_coding MGP_C57BL6NJ_T0060962.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36024544 36026053 - Bbs7 protein_coding retained_intron MGP_C57BL6NJ_T0060963.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36062465 36067560 - Bbs7 protein_coding retained_intron MGP_C57BL6NJ_T0060964.1 MGP_C57BL6NJ_G0027580.1 mouse_genomes_project 3 36063310 36067560 - MGP_C57BL6NJ_P0060964 Bbs7 protein_coding protein_coding MGP_C57BL6NJ_T0014278.1 MGP_C57BL6NJ_G0012323.1 mouse_genomes_project 3 16755616 16756028 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007951.1 MGP_C57BL6NJ_G0006500.1 mouse_genomes_project 3 160867164 160874963 + Gm43617 lincRNA lincRNA MGP_C57BL6NJ_T0014358.1 MGP_C57BL6NJ_G0012403.1 mouse_genomes_project 3 45701660 45702021 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014383.1 MGP_C57BL6NJ_G0012428.1 mouse_genomes_project 3 53532690 53533009 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001431.1 MGP_C57BL6NJ_G0001332.1 mouse_genomes_project 3 126279844 126282328 - TEC TEC MGP_C57BL6NJ_T0014467.1 MGP_C57BL6NJ_G0012512.1 mouse_genomes_project 3 74813635 74814149 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007665.1 MGP_C57BL6NJ_G0006281.1 mouse_genomes_project 3 33743664 33744444 - Gm29135 lincRNA lincRNA MGP_C57BL6NJ_T0014667.1 MGP_C57BL6NJ_G0012712.1 mouse_genomes_project 3 141874803 141875269 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060675.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26692624 26700860 + Pld1 protein_coding processed_transcript MGP_C57BL6NJ_T0060676.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26692625 26779864 + MGP_C57BL6NJ_P0060676 Pld1 protein_coding protein_coding MGP_C57BL6NJ_T0060677.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26760318 26889366 + MGP_C57BL6NJ_P0060677 Pld1 protein_coding protein_coding MGP_C57BL6NJ_T0060678.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26782438 26889490 + MGP_C57BL6NJ_P0060678 Pld1 protein_coding protein_coding MGP_C57BL6NJ_T0060679.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26793548 26801612 + Pld1 protein_coding processed_transcript MGP_C57BL6NJ_T0060680.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26818104 26834788 + Pld1 protein_coding retained_intron MGP_C57BL6NJ_T0060681.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26827291 26830610 + Pld1 protein_coding retained_intron MGP_C57BL6NJ_T0060682.1 MGP_C57BL6NJ_G0027531.1 mouse_genomes_project 3 26865541 26886923 + MGP_C57BL6NJ_P0060682 Pld1 protein_coding protein_coding MGP_C57BL6NJ_T0001464.1 MGP_C57BL6NJ_G0001365.1 mouse_genomes_project 3 134271758 134274634 - TEC TEC MGP_C57BL6NJ_T0062122.1 MGP_C57BL6NJ_G0027824.1 mouse_genomes_project 3 92133101 92134346 - MGP_C57BL6NJ_P0062122 Rxfp4 protein_coding protein_coding MGP_C57BL6NJ_T0014354.1 MGP_C57BL6NJ_G0012399.1 mouse_genomes_project 3 43805791 43806137 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062597.1 MGP_C57BL6NJ_G0027937.1 mouse_genomes_project 3 96864320 96865658 - MGP_C57BL6NJ_P0062597 Lce1l protein_coding protein_coding MGP_C57BL6NJ_T0004456.1 MGP_C57BL6NJ_G0003902.1 mouse_genomes_project 3 100573761 100587127 - Gm15444 antisense antisense MGP_C57BL6NJ_T0007657.1 MGP_C57BL6NJ_G0006274.1 mouse_genomes_project 3 29545779 29547165 - lincRNA lincRNA MGP_C57BL6NJ_T0001364.1 MGP_C57BL6NJ_G0001265.1 mouse_genomes_project 3 67048244 67049193 - TEC TEC MGP_C57BL6NJ_T0014615.1 MGP_C57BL6NJ_G0012660.1 mouse_genomes_project 3 121693203 121693639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014362.1 MGP_C57BL6NJ_G0012407.1 mouse_genomes_project 3 47223428 47224431 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064934.1 MGP_C57BL6NJ_G0028426.1 mouse_genomes_project 3 167345494 167379557 - MGP_C57BL6NJ_P0064934 Cth protein_coding protein_coding MGP_C57BL6NJ_T0064935.1 MGP_C57BL6NJ_G0028426.1 mouse_genomes_project 3 167345669 167349002 - Cth protein_coding processed_transcript MGP_C57BL6NJ_T0064936.1 MGP_C57BL6NJ_G0028426.1 mouse_genomes_project 3 167348591 167358261 - Cth protein_coding retained_intron MGP_C57BL6NJ_T0064937.1 MGP_C57BL6NJ_G0028426.1 mouse_genomes_project 3 167373919 167379531 - Cth protein_coding retained_intron MGP_C57BL6NJ_T0014462.1 MGP_C57BL6NJ_G0012507.1 mouse_genomes_project 3 73759227 73765403 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014600.1 MGP_C57BL6NJ_G0012645.1 mouse_genomes_project 3 117138515 117140043 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007691.1 MGP_C57BL6NJ_G0006300.1 mouse_genomes_project 3 40144695 40162728 - 1700017G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007692.1 MGP_C57BL6NJ_G0006300.1 mouse_genomes_project 3 40148258 40149603 - 1700017G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0064878.1 MGP_C57BL6NJ_G0028415.1 mouse_genomes_project 3 163094109 163444992 + MGP_C57BL6NJ_P0064878 Slc44a5 protein_coding protein_coding MGP_C57BL6NJ_T0064879.1 MGP_C57BL6NJ_G0028415.1 mouse_genomes_project 3 163267677 163441050 + MGP_C57BL6NJ_P0064879 Slc44a5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064880.1 MGP_C57BL6NJ_G0028415.1 mouse_genomes_project 3 163380609 163383653 + Slc44a5 protein_coding processed_transcript MGP_C57BL6NJ_T0064881.1 MGP_C57BL6NJ_G0028415.1 mouse_genomes_project 3 163423390 163444992 + Slc44a5 protein_coding retained_intron MGP_C57BL6NJ_T0061867.1 MGP_C57BL6NJ_G0027777.1 mouse_genomes_project 3 90288094 90292721 - MGP_C57BL6NJ_P0061867 protein_coding protein_coding MGP_C57BL6NJ_T0062889.1 MGP_C57BL6NJ_G0028008.1 mouse_genomes_project 3 99932243 99933241 + Ensa protein_coding TEC MGP_C57BL6NJ_T0062890.1 MGP_C57BL6NJ_G0028008.1 mouse_genomes_project 3 99932261 99939353 + MGP_C57BL6NJ_P0062890 Ensa protein_coding protein_coding MGP_C57BL6NJ_T0062891.1 MGP_C57BL6NJ_G0028008.1 mouse_genomes_project 3 99932270 99939353 + MGP_C57BL6NJ_P0062891 Ensa protein_coding protein_coding MGP_C57BL6NJ_T0062892.1 MGP_C57BL6NJ_G0028008.1 mouse_genomes_project 3 99932276 99934785 + Ensa protein_coding retained_intron MGP_C57BL6NJ_T0004415.1 MGP_C57BL6NJ_G0003876.1 mouse_genomes_project 3 83882359 83885383 - Gm16000 antisense antisense MGP_C57BL6NJ_T0064319.1 MGP_C57BL6NJ_G0028316.1 mouse_genomes_project 3 142919052 142982512 + MGP_C57BL6NJ_P0064319 Cenpe protein_coding protein_coding MGP_C57BL6NJ_T0064320.1 MGP_C57BL6NJ_G0028316.1 mouse_genomes_project 3 142948077 142952513 + MGP_C57BL6NJ_P0064320 Cenpe protein_coding protein_coding MGP_C57BL6NJ_T0064321.1 MGP_C57BL6NJ_G0028316.1 mouse_genomes_project 3 142968142 142968582 + Cenpe protein_coding retained_intron MGP_C57BL6NJ_T0064322.1 MGP_C57BL6NJ_G0028316.1 mouse_genomes_project 3 142968945 142975079 + Cenpe protein_coding retained_intron MGP_C57BL6NJ_T0064323.1 MGP_C57BL6NJ_G0028316.1 mouse_genomes_project 3 142979527 142980059 + Cenpe protein_coding retained_intron MGP_C57BL6NJ_T0101554.1 MGP_C57BL6NJ_G0039600.1 mouse_genomes_project 3 4869013 4869130 - Gm23592 snoRNA snoRNA MGP_C57BL6NJ_T0014431.1 MGP_C57BL6NJ_G0012476.1 mouse_genomes_project 3 67615968 67616789 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061602.1 MGP_C57BL6NJ_G0027711.1 mouse_genomes_project 3 70809086 70819286 - MGP_C57BL6NJ_P0061602 Trim59 protein_coding protein_coding MGP_C57BL6NJ_T0061603.1 MGP_C57BL6NJ_G0027711.1 mouse_genomes_project 3 70810635 70819246 - MGP_C57BL6NJ_P0061603 Trim59 protein_coding protein_coding MGP_C57BL6NJ_T0061604.1 MGP_C57BL6NJ_G0027711.1 mouse_genomes_project 3 70818092 70819246 - Trim59 protein_coding retained_intron MGP_C57BL6NJ_T0061605.1 MGP_C57BL6NJ_G0027711.1 mouse_genomes_project 3 70818319 70819254 - Trim59 protein_coding processed_transcript MGP_C57BL6NJ_T0007730.1 MGP_C57BL6NJ_G0006327.1 mouse_genomes_project 3 59064184 59086259 - 1700007F19Rik lincRNA lincRNA MGP_C57BL6NJ_T0014647.1 MGP_C57BL6NJ_G0012692.1 mouse_genomes_project 3 132010450 132011462 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001275.1 MGP_C57BL6NJ_G0001178.1 mouse_genomes_project 3 33299931 33305264 + TEC TEC MGP_C57BL6NJ_T0061787.1 MGP_C57BL6NJ_G0027758.1 mouse_genomes_project 3 87119270 87192597 - MGP_C57BL6NJ_P0061787 Mnd1 protein_coding protein_coding MGP_C57BL6NJ_T0001451.1 MGP_C57BL6NJ_G0001352.1 mouse_genomes_project 3 133515199 133519254 + TEC TEC MGP_C57BL6NJ_T0004519.1 MGP_C57BL6NJ_G0003941.1 mouse_genomes_project 3 133777062 133778778 - Gm15551 antisense antisense MGP_C57BL6NJ_T0063872.1 MGP_C57BL6NJ_G0028236.1 mouse_genomes_project 3 123215361 123267338 - MGP_C57BL6NJ_P0063872 Palmd protein_coding protein_coding MGP_C57BL6NJ_T0063873.1 MGP_C57BL6NJ_G0028236.1 mouse_genomes_project 3 123218949 123267209 - MGP_C57BL6NJ_P0063873 Palmd protein_coding protein_coding MGP_C57BL6NJ_T0063874.1 MGP_C57BL6NJ_G0028236.1 mouse_genomes_project 3 123224355 123267337 - MGP_C57BL6NJ_P0063874 Palmd protein_coding protein_coding MGP_C57BL6NJ_T0063875.1 MGP_C57BL6NJ_G0028236.1 mouse_genomes_project 3 123263385 123267094 - Palmd protein_coding retained_intron MGP_C57BL6NJ_T0063938.1 MGP_C57BL6NJ_G0028248.1 mouse_genomes_project 3 128363622 128375835 + MGP_C57BL6NJ_P0063938 4930432M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0063939.1 MGP_C57BL6NJ_G0028248.1 mouse_genomes_project 3 128364177 128375688 + MGP_C57BL6NJ_P0063939 4930432M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0064165.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137083094 137165997 - MGP_C57BL6NJ_P0064165 Egf protein_coding protein_coding MGP_C57BL6NJ_T0064166.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137083107 137134731 - MGP_C57BL6NJ_P0064166 Egf protein_coding protein_coding MGP_C57BL6NJ_T0064167.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137083109 137134721 - MGP_C57BL6NJ_P0064167 Egf protein_coding protein_coding MGP_C57BL6NJ_T0064168.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137083866 137087076 - Egf protein_coding retained_intron MGP_C57BL6NJ_T0064169.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137091714 137101710 - Egf protein_coding retained_intron MGP_C57BL6NJ_T0064170.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137100991 137103937 - Egf protein_coding retained_intron MGP_C57BL6NJ_T0064171.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137108120 137134730 - MGP_C57BL6NJ_P0064171 Egf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064172.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137145094 137165997 - Egf protein_coding retained_intron MGP_C57BL6NJ_T0064173.1 MGP_C57BL6NJ_G0028286.1 mouse_genomes_project 3 137146566 137165997 - Egf protein_coding processed_transcript MGP_C57BL6NJ_T0062065.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91942921 91947382 - Lmna protein_coding retained_intron MGP_C57BL6NJ_T0062066.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91943922 91968491 - MGP_C57BL6NJ_P0062066 Lmna protein_coding protein_coding MGP_C57BL6NJ_T0062067.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91944620 91968493 - Lmna protein_coding processed_transcript MGP_C57BL6NJ_T0062068.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91944851 91945639 - Lmna protein_coding retained_intron MGP_C57BL6NJ_T0062069.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91945979 91968463 - MGP_C57BL6NJ_P0062069 Lmna protein_coding protein_coding MGP_C57BL6NJ_T0062070.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91945980 91957653 - MGP_C57BL6NJ_P0062070 Lmna protein_coding protein_coding MGP_C57BL6NJ_T0062071.1 MGP_C57BL6NJ_G0027817.1 mouse_genomes_project 3 91967908 91977310 - MGP_C57BL6NJ_P0062071 Lmna protein_coding protein_coding MGP_C57BL6NJ_T0007935.1 MGP_C57BL6NJ_G0006492.1 mouse_genomes_project 3 157978025 157982084 - Gm10287 lincRNA lincRNA MGP_C57BL6NJ_T0007936.1 MGP_C57BL6NJ_G0006492.1 mouse_genomes_project 3 157978031 157982084 - Gm10287 lincRNA lincRNA MGP_C57BL6NJ_T0001481.1 MGP_C57BL6NJ_G0001381.1 mouse_genomes_project 3 138011622 138017765 + TEC TEC MGP_C57BL6NJ_T0014545.1 MGP_C57BL6NJ_G0012590.1 mouse_genomes_project 3 101114061 101114541 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060565.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17490690 17581962 - MGP_C57BL6NJ_P0060565 Pde7a protein_coding protein_coding MGP_C57BL6NJ_T0060566.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17492264 17537477 - MGP_C57BL6NJ_P0060566 Pde7a protein_coding protein_coding MGP_C57BL6NJ_T0060567.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17494967 17497611 - Pde7a protein_coding retained_intron MGP_C57BL6NJ_T0060568.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17495304 17501112 - Pde7a protein_coding processed_transcript MGP_C57BL6NJ_T0060569.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17497871 17532710 - MGP_C57BL6NJ_P0060569 Pde7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060570.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17497943 17504922 - Pde7a protein_coding retained_intron MGP_C57BL6NJ_T0060571.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17501387 17581693 - MGP_C57BL6NJ_P0060571 Pde7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060572.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17504873 17537434 - MGP_C57BL6NJ_P0060572 Pde7a protein_coding protein_coding MGP_C57BL6NJ_T0060573.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17529162 17581945 - Pde7a protein_coding retained_intron MGP_C57BL6NJ_T0060574.1 MGP_C57BL6NJ_G0027509.1 mouse_genomes_project 3 17529260 17581544 - Pde7a protein_coding processed_transcript MGP_C57BL6NJ_T0061818.1 MGP_C57BL6NJ_G0027765.1 mouse_genomes_project 3 87756904 87804391 + MGP_C57BL6NJ_P0061818 Tmem154 protein_coding protein_coding MGP_C57BL6NJ_T0061819.1 MGP_C57BL6NJ_G0027765.1 mouse_genomes_project 3 87756922 87777418 + Tmem154 protein_coding retained_intron MGP_C57BL6NJ_T0061820.1 MGP_C57BL6NJ_G0027765.1 mouse_genomes_project 3 87757082 87777308 + Tmem154 protein_coding processed_transcript MGP_C57BL6NJ_T0061821.1 MGP_C57BL6NJ_G0027765.1 mouse_genomes_project 3 87783009 87785271 + Tmem154 protein_coding retained_intron MGP_C57BL6NJ_T0001423.1 MGP_C57BL6NJ_G0001324.1 mouse_genomes_project 3 122368997 122370021 + TEC TEC MGP_C57BL6NJ_T0010754.1 MGP_C57BL6NJ_G0008839.1 mouse_genomes_project 3 70781609 70781704 + Mir16-2 miRNA miRNA MGP_C57BL6NJ_T0063807.1 MGP_C57BL6NJ_G0028224.1 mouse_genomes_project 3 122475168 122479016 - MGP_C57BL6NJ_P0063807 Gpr88 protein_coding protein_coding MGP_C57BL6NJ_T0063808.1 MGP_C57BL6NJ_G0028224.1 mouse_genomes_project 3 122478077 122478602 - MGP_C57BL6NJ_P0063808 Gpr88 protein_coding protein_coding MGP_C57BL6NJ_T0063809.1 MGP_C57BL6NJ_G0028224.1 mouse_genomes_project 3 122478190 122478976 - Gpr88 protein_coding processed_transcript MGP_C57BL6NJ_T0060575.1 MGP_C57BL6NJ_G0027510.1 mouse_genomes_project 3 17800404 17897129 + MGP_C57BL6NJ_P0060575 Dnajc5b protein_coding protein_coding MGP_C57BL6NJ_T0060576.1 MGP_C57BL6NJ_G0027510.1 mouse_genomes_project 3 17800424 17897259 + MGP_C57BL6NJ_P0060576 Dnajc5b protein_coding protein_coding MGP_C57BL6NJ_T0060577.1 MGP_C57BL6NJ_G0027510.1 mouse_genomes_project 3 17822184 17897147 + MGP_C57BL6NJ_P0060577 Dnajc5b protein_coding protein_coding MGP_C57BL6NJ_T0060578.1 MGP_C57BL6NJ_G0027510.1 mouse_genomes_project 3 17822760 17897258 + MGP_C57BL6NJ_P0060578 Dnajc5b protein_coding protein_coding MGP_C57BL6NJ_T0014701.1 MGP_C57BL6NJ_G0012746.1 mouse_genomes_project 3 150633455 150633549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062602.1 MGP_C57BL6NJ_G0027942.1 mouse_genomes_project 3 96997737 97007241 + MGP_C57BL6NJ_P0062602 Lce3e protein_coding protein_coding MGP_C57BL6NJ_T0007712.1 MGP_C57BL6NJ_G0006313.1 mouse_genomes_project 3 52665284 52759729 - Gm37202 lincRNA lincRNA MGP_C57BL6NJ_T0060667.1 MGP_C57BL6NJ_G0027527.1 mouse_genomes_project 3 26011370 26035016 + MGP_C57BL6NJ_P0060667 Tnfsf10 protein_coding protein_coding MGP_C57BL6NJ_T0060668.1 MGP_C57BL6NJ_G0027527.1 mouse_genomes_project 3 26011403 26037615 + MGP_C57BL6NJ_P0060668 Tnfsf10 protein_coding protein_coding MGP_C57BL6NJ_T0007708.1 MGP_C57BL6NJ_G0006310.1 mouse_genomes_project 3 49697899 49759312 + lincRNA lincRNA MGP_C57BL6NJ_T0001459.1 MGP_C57BL6NJ_G0001360.1 mouse_genomes_project 3 134093198 134094243 - TEC TEC MGP_C57BL6NJ_T0062567.1 MGP_C57BL6NJ_G0027911.1 mouse_genomes_project 3 96365847 96367487 + MGP_C57BL6NJ_P0062567 Sprr2h protein_coding protein_coding MGP_C57BL6NJ_T0062568.1 MGP_C57BL6NJ_G0027911.1 mouse_genomes_project 3 96365862 96367263 + MGP_C57BL6NJ_P0062568 Sprr2h protein_coding protein_coding MGP_C57BL6NJ_T0099089.1 MGP_C57BL6NJ_G0037153.1 mouse_genomes_project 3 24068775 24068910 + Gm24250 rRNA rRNA MGP_C57BL6NJ_T0004542.1 MGP_C57BL6NJ_G0003958.1 mouse_genomes_project 3 146114478 146147740 - 0610031O16Rik antisense antisense MGP_C57BL6NJ_T0004543.1 MGP_C57BL6NJ_G0003958.1 mouse_genomes_project 3 146124120 146147740 - 0610031O16Rik antisense antisense MGP_C57BL6NJ_T0004544.1 MGP_C57BL6NJ_G0003958.1 mouse_genomes_project 3 146134636 146147756 - 0610031O16Rik antisense antisense MGP_C57BL6NJ_T0004545.1 MGP_C57BL6NJ_G0003958.1 mouse_genomes_project 3 146137144 146148482 - 0610031O16Rik antisense antisense MGP_C57BL6NJ_T0062881.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894568 99925430 + MGP_C57BL6NJ_P0062881 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062882.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894568 99925435 + MGP_C57BL6NJ_P0062882 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062883.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894568 99925435 + MGP_C57BL6NJ_P0062883 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062884.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894603 99925429 + MGP_C57BL6NJ_P0062884 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062885.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894603 99923752 + MGP_C57BL6NJ_P0062885 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062886.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894608 99925428 + MGP_C57BL6NJ_P0062886 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0062887.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894615 99925429 + MGP_C57BL6NJ_P0062887 Golph3l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062888.1 MGP_C57BL6NJ_G0028007.1 mouse_genomes_project 3 99894624 99923683 + MGP_C57BL6NJ_P0062888 Golph3l protein_coding protein_coding MGP_C57BL6NJ_T0001355.1 MGP_C57BL6NJ_G0001256.1 mouse_genomes_project 3 58551292 58552468 - TEC TEC MGP_C57BL6NJ_T0062304.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92974909 92984896 - MGP_C57BL6NJ_P0062304 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062305.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92974909 92989776 - MGP_C57BL6NJ_P0062305 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062306.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92974909 92985378 - MGP_C57BL6NJ_P0062306 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062307.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92974909 92990989 - MGP_C57BL6NJ_P0062307 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062308.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92978403 92991287 - MGP_C57BL6NJ_P0062308 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062309.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92979129 92991244 - MGP_C57BL6NJ_P0062309 Zbtb7b protein_coding protein_coding MGP_C57BL6NJ_T0062310.1 MGP_C57BL6NJ_G0027854.1 mouse_genomes_project 3 92990219 92992385 - Zbtb7b protein_coding processed_transcript MGP_C57BL6NJ_T0064647.1 MGP_C57BL6NJ_G0028381.1 mouse_genomes_project 3 154622544 154629876 + MGP_C57BL6NJ_P0064647 Mcoln3 protein_coding protein_coding MGP_C57BL6NJ_T0064648.1 MGP_C57BL6NJ_G0028381.1 mouse_genomes_project 3 154626834 154647669 + MGP_C57BL6NJ_P0064648 Mcoln3 protein_coding protein_coding MGP_C57BL6NJ_T0064649.1 MGP_C57BL6NJ_G0028381.1 mouse_genomes_project 3 154626955 154646461 + MGP_C57BL6NJ_P0064649 Mcoln3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064650.1 MGP_C57BL6NJ_G0028381.1 mouse_genomes_project 3 154644942 154646526 + Mcoln3 protein_coding retained_intron MGP_C57BL6NJ_T0062225.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793976 92798791 - MGP_C57BL6NJ_P0062225 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062226.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793978 92799328 - MGP_C57BL6NJ_P0062226 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062227.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793983 92795234 - MGP_C57BL6NJ_P0062227 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062228.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793984 92794562 - Mtx1 protein_coding retained_intron MGP_C57BL6NJ_T0062229.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793984 92794992 - Mtx1 protein_coding processed_transcript MGP_C57BL6NJ_T0062230.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793984 92799255 - MGP_C57BL6NJ_P0062230 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062231.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793986 92795019 - MGP_C57BL6NJ_P0062231 Mtx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062232.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92793989 92798805 - MGP_C57BL6NJ_P0062232 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062233.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794110 92798738 - MGP_C57BL6NJ_P0062233 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062234.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794225 92798810 - MGP_C57BL6NJ_P0062234 Mtx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062235.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794253 92813260 - MGP_C57BL6NJ_P0062235 Mtx1 protein_coding protein_coding MGP_C57BL6NJ_T0062236.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794311 92795734 - Mtx1 protein_coding retained_intron MGP_C57BL6NJ_T0062237.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794543 92795621 - Mtx1 protein_coding retained_intron MGP_C57BL6NJ_T0062238.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794642 92798760 - Mtx1 protein_coding retained_intron MGP_C57BL6NJ_T0062239.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92794929 92798783 - MGP_C57BL6NJ_P0062239 Mtx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062240.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92795157 92798775 - Mtx1 protein_coding retained_intron MGP_C57BL6NJ_T0062241.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92795573 92798724 - MGP_C57BL6NJ_P0062241 Mtx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062248.1 MGP_C57BL6NJ_G0027841.1 mouse_genomes_project 3 92810316 92813296 - Mtx1 protein_coding processed_transcript MGP_C57BL6NJ_T0061260.1 MGP_C57BL6NJ_G0027632.1 mouse_genomes_project 3 55448428 55449606 - MGP_C57BL6NJ_P0061260 Gm21958 protein_coding protein_coding MGP_C57BL6NJ_T0004557.1 MGP_C57BL6NJ_G0003969.1 mouse_genomes_project 3 161090985 161091930 + Gm43455 antisense antisense MGP_C57BL6NJ_T0004558.1 MGP_C57BL6NJ_G0003969.1 mouse_genomes_project 3 161091204 161091930 + Gm43455 antisense antisense MGP_C57BL6NJ_T0064430.1 MGP_C57BL6NJ_G0028335.1 mouse_genomes_project 3 145951738 145970370 - MGP_C57BL6NJ_P0064430 Gm5105 protein_coding protein_coding MGP_C57BL6NJ_T0001326.1 MGP_C57BL6NJ_G0001228.1 mouse_genomes_project 3 52265655 52270620 - TEC TEC MGP_C57BL6NJ_T0062540.1 MGP_C57BL6NJ_G0027893.1 mouse_genomes_project 3 94338486 94342467 + MGP_C57BL6NJ_P0062540 Gm42674 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063058.1 MGP_C57BL6NJ_G0028048.1 mouse_genomes_project 3 101156510 101158991 - MGP_C57BL6NJ_P0063058 Nudt17 protein_coding protein_coding MGP_C57BL6NJ_T0063059.1 MGP_C57BL6NJ_G0028048.1 mouse_genomes_project 3 101156511 101157687 - Nudt17 protein_coding retained_intron MGP_C57BL6NJ_T0063060.1 MGP_C57BL6NJ_G0028048.1 mouse_genomes_project 3 101156512 101159006 - MGP_C57BL6NJ_P0063060 Nudt17 protein_coding protein_coding MGP_C57BL6NJ_T0063061.1 MGP_C57BL6NJ_G0028048.1 mouse_genomes_project 3 101156611 101158983 - MGP_C57BL6NJ_P0063061 Nudt17 protein_coding protein_coding MGP_C57BL6NJ_T0007798.1 MGP_C57BL6NJ_G0006376.1 mouse_genomes_project 3 100180842 100186443 + Gm26594 lincRNA lincRNA MGP_C57BL6NJ_T0010771.1 MGP_C57BL6NJ_G0008856.1 mouse_genomes_project 3 99253185 99253257 + Mir7013 miRNA miRNA MGP_C57BL6NJ_T0014403.1 MGP_C57BL6NJ_G0012448.1 mouse_genomes_project 3 59345763 59346180 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014585.1 MGP_C57BL6NJ_G0012630.1 mouse_genomes_project 3 113468204 113469570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100283.1 MGP_C57BL6NJ_G0038329.1 mouse_genomes_project 3 94281908 94282014 + Gm24593 snRNA snRNA MGP_C57BL6NJ_T0099400.1 MGP_C57BL6NJ_G0037457.1 mouse_genomes_project 3 106560143 106561464 - Gm42941 sense_intronic sense_intronic MGP_C57BL6NJ_T0001260.1 MGP_C57BL6NJ_G0001163.1 mouse_genomes_project 3 29243335 29245399 - TEC TEC MGP_C57BL6NJ_T0004387.1 MGP_C57BL6NJ_G0003853.1 mouse_genomes_project 3 50424398 50433180 + Gm37854 antisense antisense MGP_C57BL6NJ_T0007897.1 MGP_C57BL6NJ_G0006459.1 mouse_genomes_project 3 145810360 145810787 - Gm43689 lincRNA lincRNA MGP_C57BL6NJ_T0011798.1 MGP_C57BL6NJ_G0009883.1 mouse_genomes_project 3 33923060 33923168 + Gm27611 misc_RNA misc_RNA MGP_C57BL6NJ_T0014392.1 MGP_C57BL6NJ_G0012437.1 mouse_genomes_project 3 57991918 57993254 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007962.1 MGP_C57BL6NJ_G0006507.1 mouse_genomes_project 3 167142510 167148509 - Gm33466 lincRNA lincRNA MGP_C57BL6NJ_T0060701.1 MGP_C57BL6NJ_G0027533.1 mouse_genomes_project 3 27478155 27511659 + MGP_C57BL6NJ_P0060701 Slc2a2 protein_coding protein_coding MGP_C57BL6NJ_T0060702.1 MGP_C57BL6NJ_G0027533.1 mouse_genomes_project 3 27478269 27507778 + MGP_C57BL6NJ_P0060702 Slc2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060703.1 MGP_C57BL6NJ_G0027533.1 mouse_genomes_project 3 27501818 27508629 + Slc2a2 protein_coding retained_intron MGP_C57BL6NJ_T0060993.1 MGP_C57BL6NJ_G0027583.1 mouse_genomes_project 3 36541534 36588470 + MGP_C57BL6NJ_P0060993 Adad1 protein_coding protein_coding MGP_C57BL6NJ_T0060994.1 MGP_C57BL6NJ_G0027583.1 mouse_genomes_project 3 36541638 36587470 + MGP_C57BL6NJ_P0060994 Adad1 protein_coding protein_coding MGP_C57BL6NJ_T0060995.1 MGP_C57BL6NJ_G0027583.1 mouse_genomes_project 3 36541685 36545364 + Adad1 protein_coding retained_intron MGP_C57BL6NJ_T0060996.1 MGP_C57BL6NJ_G0027583.1 mouse_genomes_project 3 36564052 36571229 + Adad1 protein_coding retained_intron MGP_C57BL6NJ_T0060997.1 MGP_C57BL6NJ_G0027583.1 mouse_genomes_project 3 36564189 36597876 + MGP_C57BL6NJ_P0060997 Adad1 protein_coding protein_coding MGP_C57BL6NJ_T0007808.1 MGP_C57BL6NJ_G0006386.1 mouse_genomes_project 3 103810546 103814469 + Gm12440 lincRNA lincRNA MGP_C57BL6NJ_T0063667.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114112155 114197085 - MGP_C57BL6NJ_P0063667 5330417C22Rik protein_coding protein_coding MGP_C57BL6NJ_T0063668.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114114538 114201506 - MGP_C57BL6NJ_P0063668 5330417C22Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063669.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114114644 114201511 - MGP_C57BL6NJ_P0063669 5330417C22Rik protein_coding protein_coding MGP_C57BL6NJ_T0063670.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114119974 114121391 - 5330417C22Rik protein_coding retained_intron MGP_C57BL6NJ_T0063671.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114124171 114126498 - 5330417C22Rik protein_coding retained_intron MGP_C57BL6NJ_T0063672.1 MGP_C57BL6NJ_G0028194.1 mouse_genomes_project 3 114148399 114197096 - 5330417C22Rik protein_coding retained_intron MGP_C57BL6NJ_T0004454.1 MGP_C57BL6NJ_G0003901.1 mouse_genomes_project 3 100525935 100530886 - Gm17690 antisense antisense MGP_C57BL6NJ_T0004455.1 MGP_C57BL6NJ_G0003901.1 mouse_genomes_project 3 100529846 100530888 - Gm17690 antisense antisense MGP_C57BL6NJ_T0061977.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91469376 91512263 + MGP_C57BL6NJ_P0061977 Iqgap3 protein_coding protein_coding MGP_C57BL6NJ_T0061978.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91469425 91474905 + Iqgap3 protein_coding retained_intron MGP_C57BL6NJ_T0061979.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91469433 91498334 + MGP_C57BL6NJ_P0061979 Iqgap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061980.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91473502 91474898 + Iqgap3 protein_coding retained_intron MGP_C57BL6NJ_T0061981.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91493677 91512259 + MGP_C57BL6NJ_P0061981 Iqgap3 protein_coding protein_coding MGP_C57BL6NJ_T0061982.1 MGP_C57BL6NJ_G0027802.1 mouse_genomes_project 3 91497059 91503379 + Iqgap3 protein_coding retained_intron MGP_C57BL6NJ_T0014288.1 MGP_C57BL6NJ_G0012333.1 mouse_genomes_project 3 19116460 19118072 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007737.1 MGP_C57BL6NJ_G0006332.1 mouse_genomes_project 3 69205091 69207188 - Gm35299 lincRNA lincRNA MGP_C57BL6NJ_T0004410.1 MGP_C57BL6NJ_G0003871.1 mouse_genomes_project 3 67392608 67438622 - Gm37359 antisense antisense MGP_C57BL6NJ_T0063449.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111258183 111259913 + Tmigd3 protein_coding processed_transcript MGP_C57BL6NJ_T0063450.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111258187 111316097 + MGP_C57BL6NJ_P0063450 Tmigd3 protein_coding protein_coding MGP_C57BL6NJ_T0063451.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111258187 111316016 + MGP_C57BL6NJ_P0063451 Tmigd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063452.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111258257 111259143 + Tmigd3 protein_coding processed_transcript MGP_C57BL6NJ_T0063454.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111293685 111310853 + MGP_C57BL6NJ_P0063454 Tmigd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063456.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111305074 111316100 + MGP_C57BL6NJ_P0063456 Tmigd3 protein_coding protein_coding MGP_C57BL6NJ_T0063457.1 MGP_C57BL6NJ_G0028138.1 mouse_genomes_project 3 111305074 111316103 + MGP_C57BL6NJ_P0063457 Tmigd3 protein_coding protein_coding MGP_C57BL6NJ_T0011801.1 MGP_C57BL6NJ_G0009886.1 mouse_genomes_project 3 74469422 74469513 + Gm27465 misc_RNA misc_RNA MGP_C57BL6NJ_T0007823.1 MGP_C57BL6NJ_G0006399.1 mouse_genomes_project 3 109938052 109940849 - Gm29561 lincRNA lincRNA MGP_C57BL6NJ_T0010735.1 MGP_C57BL6NJ_G0008820.1 mouse_genomes_project 3 25264688 25264815 - Gm25773 miRNA miRNA MGP_C57BL6NJ_T0062311.1 MGP_C57BL6NJ_G0027855.1 mouse_genomes_project 3 92999946 93001752 - MGP_C57BL6NJ_P0062311 Lenep protein_coding protein_coding MGP_C57BL6NJ_T0064732.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160384357 160501128 + MGP_C57BL6NJ_P0064732 Adgrl4 protein_coding protein_coding MGP_C57BL6NJ_T0064733.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160384399 160451602 + MGP_C57BL6NJ_P0064733 Adgrl4 protein_coding protein_coding MGP_C57BL6NJ_T0064734.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160384744 160449484 + Adgrl4 protein_coding processed_transcript MGP_C57BL6NJ_T0064735.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160385568 160451573 + Adgrl4 protein_coding retained_intron MGP_C57BL6NJ_T0064736.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160451476 160460682 + Adgrl4 protein_coding processed_transcript MGP_C57BL6NJ_T0064737.1 MGP_C57BL6NJ_G0028396.1 mouse_genomes_project 3 160470613 160475321 + Adgrl4 protein_coding processed_transcript MGP_C57BL6NJ_T0064527.1 MGP_C57BL6NJ_G0028355.1 mouse_genomes_project 3 150789893 150808865 + MGP_C57BL6NJ_P0064527 Gbp7 protein_coding protein_coding MGP_C57BL6NJ_T0064528.1 MGP_C57BL6NJ_G0028355.1 mouse_genomes_project 3 150789893 150811964 + MGP_C57BL6NJ_P0064528 Gbp7 protein_coding protein_coding MGP_C57BL6NJ_T0100280.1 MGP_C57BL6NJ_G0038326.1 mouse_genomes_project 3 92786136 92786243 - Gm23269 snRNA snRNA MGP_C57BL6NJ_T0014519.1 MGP_C57BL6NJ_G0012564.1 mouse_genomes_project 3 96665887 96666515 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100299.1 MGP_C57BL6NJ_G0038345.1 mouse_genomes_project 3 109872472 109872554 - Gm26091 snRNA snRNA MGP_C57BL6NJ_T0014382.1 MGP_C57BL6NJ_G0012427.1 mouse_genomes_project 3 52974703 52974944 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014539.1 MGP_C57BL6NJ_G0012584.1 mouse_genomes_project 3 100221696 100226387 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011792.1 MGP_C57BL6NJ_G0009877.1 mouse_genomes_project 3 11899136 11899417 - Gm22026 misc_RNA misc_RNA MGP_C57BL6NJ_T0014276.1 MGP_C57BL6NJ_G0012321.1 mouse_genomes_project 3 15542894 15543399 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004430.1 MGP_C57BL6NJ_G0003886.1 mouse_genomes_project 3 92761070 92762609 - Gm16069 antisense antisense MGP_C57BL6NJ_T0011805.1 MGP_C57BL6NJ_G0009890.1 mouse_genomes_project 3 86619360 86619658 - Gm22342 misc_RNA misc_RNA MGP_C57BL6NJ_T0010776.1 MGP_C57BL6NJ_G0008861.1 mouse_genomes_project 3 103957684 103957794 - Mir6481 miRNA miRNA MGP_C57BL6NJ_T0064357.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143204744 143304476 + MGP_C57BL6NJ_P0064357 Manba protein_coding protein_coding MGP_C57BL6NJ_T0064358.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143204744 143288638 + MGP_C57BL6NJ_P0064358 Manba protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064359.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143204752 143288599 + Manba protein_coding retained_intron MGP_C57BL6NJ_T0064360.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143204758 143235090 + Manba protein_coding retained_intron MGP_C57BL6NJ_T0064361.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143239410 143266679 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0064362.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143245218 143246843 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0064363.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143269007 143283093 + Manba protein_coding retained_intron MGP_C57BL6NJ_T0064364.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143273255 143287841 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0064365.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143282194 143289833 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0064366.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143282265 143296302 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0064367.1 MGP_C57BL6NJ_G0028322.1 mouse_genomes_project 3 143296262 143300625 + Manba protein_coding processed_transcript MGP_C57BL6NJ_T0062133.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199825 92210520 + MGP_C57BL6NJ_P0062133 Rit1 protein_coding protein_coding MGP_C57BL6NJ_T0062134.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199830 92200957 + Rit1 protein_coding retained_intron MGP_C57BL6NJ_T0062135.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199840 92215207 + MGP_C57BL6NJ_P0062135 Rit1 protein_coding protein_coding MGP_C57BL6NJ_T0062136.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199843 92215193 + MGP_C57BL6NJ_P0062136 Rit1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062137.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199847 92215201 + Rit1 protein_coding retained_intron MGP_C57BL6NJ_T0062138.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199848 92213699 + MGP_C57BL6NJ_P0062138 Rit1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062139.1 MGP_C57BL6NJ_G0027826.1 mouse_genomes_project 3 92199860 92210470 + Rit1 protein_coding retained_intron MGP_C57BL6NJ_T0001485.1 MGP_C57BL6NJ_G0001385.1 mouse_genomes_project 3 138368122 138368833 + TEC TEC MGP_C57BL6NJ_T0014426.1 MGP_C57BL6NJ_G0012471.1 mouse_genomes_project 3 67169454 67171049 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014502.1 MGP_C57BL6NJ_G0012547.1 mouse_genomes_project 3 90353346 90353875 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007652.1 MGP_C57BL6NJ_G0006269.1 mouse_genomes_project 3 25818892 25821886 + 1700125G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0063487.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111966748 111972923 + Dennd2d protein_coding processed_transcript MGP_C57BL6NJ_T0063488.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111966774 111992004 + MGP_C57BL6NJ_P0063488 Dennd2d protein_coding protein_coding MGP_C57BL6NJ_T0063489.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111966793 111972941 + MGP_C57BL6NJ_P0063489 Dennd2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063490.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111970385 111987139 + MGP_C57BL6NJ_P0063490 Dennd2d protein_coding protein_coding MGP_C57BL6NJ_T0063491.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111971753 111972977 + Dennd2d protein_coding retained_intron MGP_C57BL6NJ_T0063492.1 MGP_C57BL6NJ_G0028149.1 mouse_genomes_project 3 111977510 111979635 + Dennd2d protein_coding retained_intron MGP_C57BL6NJ_T0014373.1 MGP_C57BL6NJ_G0012418.1 mouse_genomes_project 3 50457609 50457931 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010747.1 MGP_C57BL6NJ_G0008832.1 mouse_genomes_project 3 38110195 38110301 - Gm24462 miRNA miRNA MGP_C57BL6NJ_T0001391.1 MGP_C57BL6NJ_G0001292.1 mouse_genomes_project 3 94021467 94028439 + TEC TEC MGP_C57BL6NJ_T0011791.1 MGP_C57BL6NJ_G0009876.1 mouse_genomes_project 3 11708751 11709046 + Gm25981 misc_RNA misc_RNA MGP_C57BL6NJ_T0063161.1 MGP_C57BL6NJ_G0028074.1 mouse_genomes_project 3 103551823 103563966 - MGP_C57BL6NJ_P0063161 Hsd3b6 protein_coding protein_coding MGP_C57BL6NJ_T0063162.1 MGP_C57BL6NJ_G0028074.1 mouse_genomes_project 3 103551824 103558574 - MGP_C57BL6NJ_P0063162 Hsd3b6 protein_coding protein_coding MGP_C57BL6NJ_T0063163.1 MGP_C57BL6NJ_G0028074.1 mouse_genomes_project 3 103552794 103563945 - Hsd3b6 protein_coding processed_transcript MGP_C57BL6NJ_T0007732.1 MGP_C57BL6NJ_G0006328.1 mouse_genomes_project 3 59674802 59780026 + 4930593A02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007733.1 MGP_C57BL6NJ_G0006328.1 mouse_genomes_project 3 59716997 59788725 + 4930593A02Rik lincRNA lincRNA MGP_C57BL6NJ_T0062996.1 MGP_C57BL6NJ_G0028025.1 mouse_genomes_project 3 100530803 100540795 + MGP_C57BL6NJ_P0062996 Sf3b4 protein_coding protein_coding MGP_C57BL6NJ_T0062997.1 MGP_C57BL6NJ_G0028025.1 mouse_genomes_project 3 100531017 100534033 + Sf3b4 protein_coding retained_intron MGP_C57BL6NJ_T0062998.1 MGP_C57BL6NJ_G0028025.1 mouse_genomes_project 3 100531044 100540627 + MGP_C57BL6NJ_P0062998 Sf3b4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007632.1 MGP_C57BL6NJ_G0006256.1 mouse_genomes_project 3 15465862 15472565 - Gm30340 lincRNA lincRNA MGP_C57BL6NJ_T0014363.1 MGP_C57BL6NJ_G0012408.1 mouse_genomes_project 3 47386345 47386811 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014356.1 MGP_C57BL6NJ_G0012401.1 mouse_genomes_project 3 44679456 44679838 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001500.1 MGP_C57BL6NJ_G0001400.1 mouse_genomes_project 3 144510355 144511884 + TEC TEC MGP_C57BL6NJ_T0064058.1 MGP_C57BL6NJ_G0028272.1 mouse_genomes_project 3 132911056 132989767 - MGP_C57BL6NJ_P0064058 Ugt8a protein_coding protein_coding MGP_C57BL6NJ_T0064059.1 MGP_C57BL6NJ_G0028272.1 mouse_genomes_project 3 132911291 132961834 - MGP_C57BL6NJ_P0064059 Ugt8a protein_coding protein_coding MGP_C57BL6NJ_T0064060.1 MGP_C57BL6NJ_G0028272.1 mouse_genomes_project 3 132960214 132989699 - Ugt8a protein_coding retained_intron MGP_C57BL6NJ_T0014329.1 MGP_C57BL6NJ_G0012374.1 mouse_genomes_project 3 36584147 36585000 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060625.1 MGP_C57BL6NJ_G0027520.1 mouse_genomes_project 3 18648711 18707795 - MGP_C57BL6NJ_P0060625 Agtr1b protein_coding protein_coding MGP_C57BL6NJ_T0060626.1 MGP_C57BL6NJ_G0027520.1 mouse_genomes_project 3 18648927 18707742 - MGP_C57BL6NJ_P0060626 Agtr1b protein_coding protein_coding MGP_C57BL6NJ_T0001506.1 MGP_C57BL6NJ_G0001406.1 mouse_genomes_project 3 154846144 154847462 + TEC TEC MGP_C57BL6NJ_T0064472.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146471079 146505600 + MGP_C57BL6NJ_P0064472 Eif4e protein_coding protein_coding MGP_C57BL6NJ_T0064473.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146471325 146501303 + MGP_C57BL6NJ_P0064473 Eif4e protein_coding protein_coding MGP_C57BL6NJ_T0064474.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146472176 146502118 + MGP_C57BL6NJ_P0064474 Eif4e protein_coding protein_coding MGP_C57BL6NJ_T0064475.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146472176 146501462 + MGP_C57BL6NJ_P0064475 Eif4e protein_coding protein_coding MGP_C57BL6NJ_T0064476.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146472187 146501578 + MGP_C57BL6NJ_P0064476 Eif4e protein_coding protein_coding MGP_C57BL6NJ_T0064477.1 MGP_C57BL6NJ_G0028346.1 mouse_genomes_project 3 146496758 146499625 + Eif4e protein_coding retained_intron MGP_C57BL6NJ_T0001519.1 MGP_C57BL6NJ_G0001419.1 mouse_genomes_project 3 162003540 162004525 + TEC TEC MGP_C57BL6NJ_T0060647.1 MGP_C57BL6NJ_G0027524.1 mouse_genomes_project 3 25275957 25636595 + MGP_C57BL6NJ_P0060647 Spata16 protein_coding protein_coding MGP_C57BL6NJ_T0060648.1 MGP_C57BL6NJ_G0027524.1 mouse_genomes_project 3 25275987 25582577 + MGP_C57BL6NJ_P0060648 Spata16 protein_coding protein_coding MGP_C57BL6NJ_T0101567.1 MGP_C57BL6NJ_G0039613.1 mouse_genomes_project 3 41075298 41075423 - Gm25487 snoRNA snoRNA MGP_C57BL6NJ_T0014450.1 MGP_C57BL6NJ_G0012495.1 mouse_genomes_project 3 71161473 71161732 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063529.1 MGP_C57BL6NJ_G0028158.1 mouse_genomes_project 3 112768093 112778533 - MGP_C57BL6NJ_P0063529 Cym protein_coding protein_coding MGP_C57BL6NJ_T0007870.1 MGP_C57BL6NJ_G0006435.1 mouse_genomes_project 3 136399734 136402474 - Gm28543 lincRNA lincRNA MGP_C57BL6NJ_T0014627.1 MGP_C57BL6NJ_G0012672.1 mouse_genomes_project 3 126309881 126310059 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014474.1 MGP_C57BL6NJ_G0012519.1 mouse_genomes_project 3 79369964 79370303 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100298.1 MGP_C57BL6NJ_G0038344.1 mouse_genomes_project 3 109306435 109306537 + Gm23830 snRNA snRNA MGP_C57BL6NJ_T0101556.1 MGP_C57BL6NJ_G0039602.1 mouse_genomes_project 3 8628598 8628716 - Gm22795 snoRNA snoRNA MGP_C57BL6NJ_T0014448.1 MGP_C57BL6NJ_G0012493.1 mouse_genomes_project 3 70664738 70665389 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010769.1 MGP_C57BL6NJ_G0008854.1 mouse_genomes_project 3 97447947 97448085 + Gm44353 miRNA miRNA MGP_C57BL6NJ_T0014550.1 MGP_C57BL6NJ_G0012595.1 mouse_genomes_project 3 103604894 103605149 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004518.1 MGP_C57BL6NJ_G0003940.1 mouse_genomes_project 3 133504854 133513457 - Gm17225 antisense antisense MGP_C57BL6NJ_T0014563.1 MGP_C57BL6NJ_G0012608.1 mouse_genomes_project 3 106194727 106195287 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063148.1 MGP_C57BL6NJ_G0028070.1 mouse_genomes_project 3 103066527 103465708 + Zfp697 protein_coding processed_transcript MGP_C57BL6NJ_T0063149.1 MGP_C57BL6NJ_G0028070.1 mouse_genomes_project 3 103066547 103102040 + Zfp697 protein_coding processed_transcript MGP_C57BL6NJ_T0063150.1 MGP_C57BL6NJ_G0028070.1 mouse_genomes_project 3 103066547 103122593 + MGP_C57BL6NJ_P0063150 Zfp697 protein_coding protein_coding MGP_C57BL6NJ_T0063151.1 MGP_C57BL6NJ_G0028070.1 mouse_genomes_project 3 103066614 103122349 + MGP_C57BL6NJ_P0063151 Zfp697 protein_coding protein_coding MGP_C57BL6NJ_T0014619.1 MGP_C57BL6NJ_G0012664.1 mouse_genomes_project 3 123129304 123129689 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062359.1 MGP_C57BL6NJ_G0027866.1 mouse_genomes_project 3 93456896 93484801 + MGP_C57BL6NJ_P0062359 She protein_coding protein_coding MGP_C57BL6NJ_T0062360.1 MGP_C57BL6NJ_G0027866.1 mouse_genomes_project 3 93462968 93464451 + She protein_coding retained_intron MGP_C57BL6NJ_T0007917.1 MGP_C57BL6NJ_G0006477.1 mouse_genomes_project 3 152012553 152057825 - Gm6260 lincRNA lincRNA MGP_C57BL6NJ_T0007918.1 MGP_C57BL6NJ_G0006477.1 mouse_genomes_project 3 152036510 152057892 - Gm6260 lincRNA lincRNA MGP_C57BL6NJ_T0062380.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642471 93646324 - MGP_C57BL6NJ_P0062380 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062381.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642478 93646293 - MGP_C57BL6NJ_P0062381 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062382.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642481 93643399 - Hax1 protein_coding retained_intron MGP_C57BL6NJ_T0062383.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642481 93643716 - MGP_C57BL6NJ_P0062383 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062384.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642481 93646304 - MGP_C57BL6NJ_P0062384 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062385.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642482 93646313 - Hax1 protein_coding retained_intron MGP_C57BL6NJ_T0062386.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642619 93646247 - MGP_C57BL6NJ_P0062386 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062387.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642650 93646016 - MGP_C57BL6NJ_P0062387 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0062388.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93642734 93643782 - Hax1 protein_coding retained_intron MGP_C57BL6NJ_T0062389.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93643339 93646307 - MGP_C57BL6NJ_P0062389 Hax1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062390.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93645146 93646407 - Hax1 protein_coding retained_intron MGP_C57BL6NJ_T0062391.1 MGP_C57BL6NJ_G0027869.1 mouse_genomes_project 3 93645396 93645989 - MGP_C57BL6NJ_P0062391 Hax1 protein_coding protein_coding MGP_C57BL6NJ_T0007873.1 MGP_C57BL6NJ_G0006437.1 mouse_genomes_project 3 138234473 138236261 + Gm43522 lincRNA lincRNA MGP_C57BL6NJ_T0007874.1 MGP_C57BL6NJ_G0006437.1 mouse_genomes_project 3 138235398 138237320 + Gm43522 lincRNA lincRNA MGP_C57BL6NJ_T0064493.1 MGP_C57BL6NJ_G0028349.1 mouse_genomes_project 3 147197708 147745460 + MGP_C57BL6NJ_P0064493 Stpg2 protein_coding protein_coding MGP_C57BL6NJ_T0064494.1 MGP_C57BL6NJ_G0028349.1 mouse_genomes_project 3 147197907 147746149 + MGP_C57BL6NJ_P0064494 Stpg2 protein_coding protein_coding MGP_C57BL6NJ_T0063969.1 MGP_C57BL6NJ_G0028253.1 mouse_genomes_project 3 129005046 129027430 + MGP_C57BL6NJ_P0063969 Gclm protein_coding protein_coding MGP_C57BL6NJ_T0063970.1 MGP_C57BL6NJ_G0028253.1 mouse_genomes_project 3 129005048 129023805 + MGP_C57BL6NJ_P0063970 Gclm protein_coding protein_coding MGP_C57BL6NJ_T0063971.1 MGP_C57BL6NJ_G0028253.1 mouse_genomes_project 3 129005141 129026258 + MGP_C57BL6NJ_P0063971 Gclm protein_coding protein_coding MGP_C57BL6NJ_T0063972.1 MGP_C57BL6NJ_G0028253.1 mouse_genomes_project 3 129022967 129027288 + Gclm protein_coding retained_intron MGP_C57BL6NJ_T0102246.1 MGP_C57BL6NJ_G0040238.1 mouse_genomes_project 3 134652601 134655718 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0101571.1 MGP_C57BL6NJ_G0039617.1 mouse_genomes_project 3 51243625 51243760 - Gm24503 snoRNA snoRNA MGP_C57BL6NJ_T0004353.1 MGP_C57BL6NJ_G0003830.1 mouse_genomes_project 3 17495362 17512083 + Gm16093 antisense antisense MGP_C57BL6NJ_T0060832.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31835573 31847992 + MGP_C57BL6NJ_P0060832 Actl6a protein_coding protein_coding MGP_C57BL6NJ_T0060833.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31837782 31856352 + MGP_C57BL6NJ_P0060833 Actl6a protein_coding protein_coding MGP_C57BL6NJ_T0060834.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31837825 31839282 + Actl6a protein_coding retained_intron MGP_C57BL6NJ_T0060835.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31838040 31847986 + MGP_C57BL6NJ_P0060835 Actl6a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060836.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31838439 31848035 + MGP_C57BL6NJ_P0060836 Actl6a protein_coding protein_coding MGP_C57BL6NJ_T0060837.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31840658 31841446 + Actl6a protein_coding retained_intron MGP_C57BL6NJ_T0060838.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31841447 31856152 + MGP_C57BL6NJ_P0060838 Actl6a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060839.1 MGP_C57BL6NJ_G0027559.1 mouse_genomes_project 3 31847945 31856347 + Actl6a protein_coding retained_intron MGP_C57BL6NJ_T0014616.1 MGP_C57BL6NJ_G0012661.1 mouse_genomes_project 3 122145244 122145881 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102485.1 MGP_C57BL6NJ_G0040359.1 mouse_genomes_project 3 60810300 60876938 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102486.1 MGP_C57BL6NJ_G0040359.1 mouse_genomes_project 3 60858418 60886988 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0101612.1 MGP_C57BL6NJ_G0039658.1 mouse_genomes_project 3 127225477 127225605 - Gm25013 snoRNA snoRNA MGP_C57BL6NJ_T0100317.1 MGP_C57BL6NJ_G0038363.1 mouse_genomes_project 3 146268891 146269050 + Gm23467 snRNA snRNA MGP_C57BL6NJ_T0060548.1 MGP_C57BL6NJ_G0027502.1 mouse_genomes_project 3 14246442 14283117 + MGP_C57BL6NJ_P0060548 Ythdf3 protein_coding protein_coding MGP_C57BL6NJ_T0060549.1 MGP_C57BL6NJ_G0027502.1 mouse_genomes_project 3 14246466 14269607 + Ythdf3 protein_coding processed_transcript MGP_C57BL6NJ_T0060550.1 MGP_C57BL6NJ_G0027502.1 mouse_genomes_project 3 14246466 14281086 + MGP_C57BL6NJ_P0060550 Ythdf3 protein_coding protein_coding MGP_C57BL6NJ_T0060551.1 MGP_C57BL6NJ_G0027502.1 mouse_genomes_project 3 14246466 14282935 + MGP_C57BL6NJ_P0060551 Ythdf3 protein_coding protein_coding MGP_C57BL6NJ_T0063584.1 MGP_C57BL6NJ_G0028174.1 mouse_genomes_project 3 113534663 113540147 - MGP_C57BL6NJ_P0063584 Gstm7 protein_coding protein_coding MGP_C57BL6NJ_T0063585.1 MGP_C57BL6NJ_G0028174.1 mouse_genomes_project 3 113535036 113539997 - MGP_C57BL6NJ_P0063585 Gstm7 protein_coding protein_coding MGP_C57BL6NJ_T0063586.1 MGP_C57BL6NJ_G0028174.1 mouse_genomes_project 3 113535139 113539944 - MGP_C57BL6NJ_P0063586 Gstm7 protein_coding protein_coding MGP_C57BL6NJ_T0063587.1 MGP_C57BL6NJ_G0028174.1 mouse_genomes_project 3 113537392 113539909 - MGP_C57BL6NJ_P0063587 Gstm7 protein_coding protein_coding MGP_C57BL6NJ_T0063588.1 MGP_C57BL6NJ_G0028174.1 mouse_genomes_project 3 113537461 113539940 - MGP_C57BL6NJ_P0063588 Gstm7 protein_coding protein_coding MGP_C57BL6NJ_T0004426.1 MGP_C57BL6NJ_G0003882.1 mouse_genomes_project 3 92097171 92102345 - Gm20652 antisense antisense MGP_C57BL6NJ_T0014670.1 MGP_C57BL6NJ_G0012715.1 mouse_genomes_project 3 142651234 142651688 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001429.1 MGP_C57BL6NJ_G0001330.1 mouse_genomes_project 3 124960968 124964479 + TEC TEC MGP_C57BL6NJ_T0001353.1 MGP_C57BL6NJ_G0001254.1 mouse_genomes_project 3 56967838 56971454 - TEC TEC MGP_C57BL6NJ_T0004364.1 MGP_C57BL6NJ_G0003837.1 mouse_genomes_project 3 30349168 30383175 + Gm15496 antisense antisense MGP_C57BL6NJ_T0004365.1 MGP_C57BL6NJ_G0003837.1 mouse_genomes_project 3 30375188 30381292 + Gm15496 antisense antisense MGP_C57BL6NJ_T0061415.1 MGP_C57BL6NJ_G0027670.1 mouse_genomes_project 3 61082845 61102497 + MGP_C57BL6NJ_P0061415 Aadacl2 protein_coding protein_coding MGP_C57BL6NJ_T0014249.1 MGP_C57BL6NJ_G0012294.1 mouse_genomes_project 3 7551672 7552486 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001420.1 MGP_C57BL6NJ_G0001321.1 mouse_genomes_project 3 116004661 116005768 - TEC TEC MGP_C57BL6NJ_T0063132.1 MGP_C57BL6NJ_G0028064.1 mouse_genomes_project 3 102546847 102568922 + MGP_C57BL6NJ_P0063132 Sec22b protein_coding protein_coding MGP_C57BL6NJ_T0063133.1 MGP_C57BL6NJ_G0028064.1 mouse_genomes_project 3 102546873 102567497 + MGP_C57BL6NJ_P0063133 Sec22b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063134.1 MGP_C57BL6NJ_G0028064.1 mouse_genomes_project 3 102546882 102553322 + MGP_C57BL6NJ_P0063134 Sec22b protein_coding protein_coding MGP_C57BL6NJ_T0063135.1 MGP_C57BL6NJ_G0028064.1 mouse_genomes_project 3 102546884 102560853 + MGP_C57BL6NJ_P0063135 Sec22b protein_coding protein_coding MGP_C57BL6NJ_T0063136.1 MGP_C57BL6NJ_G0028064.1 mouse_genomes_project 3 102552611 102553322 + Sec22b protein_coding processed_transcript MGP_C57BL6NJ_T0014420.1 MGP_C57BL6NJ_G0012465.1 mouse_genomes_project 3 64219246 64220805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014676.1 MGP_C57BL6NJ_G0012721.1 mouse_genomes_project 3 143202937 143203266 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103090.1 MGP_C57BL6NJ_G0040884.1 mouse_genomes_project 3 97103788 97104013 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0060477.1 MGP_C57BL6NJ_G0027481.1 mouse_genomes_project 3 7851331 7911364 - MGP_C57BL6NJ_P0060477 Fabp12 protein_coding protein_coding MGP_C57BL6NJ_T0060478.1 MGP_C57BL6NJ_G0027481.1 mouse_genomes_project 3 7853040 7862504 - MGP_C57BL6NJ_P0060478 Fabp12 protein_coding protein_coding MGP_C57BL6NJ_T0060479.1 MGP_C57BL6NJ_G0027481.1 mouse_genomes_project 3 7853040 7862477 - MGP_C57BL6NJ_P0060479 Fabp12 protein_coding protein_coding MGP_C57BL6NJ_T0060480.1 MGP_C57BL6NJ_G0027481.1 mouse_genomes_project 3 7853073 7911355 - MGP_C57BL6NJ_P0060480 Fabp12 protein_coding protein_coding MGP_C57BL6NJ_T0063705.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114463940 114517550 - MGP_C57BL6NJ_P0063705 Stxbp3 protein_coding protein_coding MGP_C57BL6NJ_T0063706.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114465191 114474838 - Stxbp3 protein_coding retained_intron MGP_C57BL6NJ_T0063707.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114465635 114470088 - Stxbp3 protein_coding retained_intron MGP_C57BL6NJ_T0063708.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114472415 114478035 - Stxbp3 protein_coding retained_intron MGP_C57BL6NJ_T0063709.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114482438 114517490 - MGP_C57BL6NJ_P0063709 Stxbp3 protein_coding protein_coding MGP_C57BL6NJ_T0063710.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114496517 114517554 - Stxbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0063711.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114499247 114517565 - MGP_C57BL6NJ_P0063711 Stxbp3 protein_coding protein_coding MGP_C57BL6NJ_T0063712.1 MGP_C57BL6NJ_G0028202.1 mouse_genomes_project 3 114501850 114517549 - MGP_C57BL6NJ_P0063712 Stxbp3 protein_coding protein_coding MGP_C57BL6NJ_T0100327.1 MGP_C57BL6NJ_G0038373.1 mouse_genomes_project 3 169425214 169425321 - Gm23941 snRNA snRNA MGP_C57BL6NJ_T0062630.1 MGP_C57BL6NJ_G0027959.1 mouse_genomes_project 3 98106830 98120119 - MGP_C57BL6NJ_P0062630 protein_coding protein_coding MGP_C57BL6NJ_T0007679.1 MGP_C57BL6NJ_G0006291.1 mouse_genomes_project 3 36663346 36669055 + Gm12532 lincRNA lincRNA MGP_C57BL6NJ_T0060927.1 MGP_C57BL6NJ_G0027572.1 mouse_genomes_project 3 35400629 35449403 - MGP_C57BL6NJ_P0060927 Ccdc144b protein_coding protein_coding MGP_C57BL6NJ_T0060928.1 MGP_C57BL6NJ_G0027572.1 mouse_genomes_project 3 35404002 35449388 - MGP_C57BL6NJ_P0060928 Ccdc144b protein_coding protein_coding MGP_C57BL6NJ_T0060929.1 MGP_C57BL6NJ_G0027572.1 mouse_genomes_project 3 35409884 35449388 - MGP_C57BL6NJ_P0060929 Ccdc144b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014637.1 MGP_C57BL6NJ_G0012682.1 mouse_genomes_project 3 129430723 129431210 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099092.1 MGP_C57BL6NJ_G0037156.1 mouse_genomes_project 3 52342295 52342412 + n-R5s196 rRNA rRNA MGP_C57BL6NJ_T0014244.1 MGP_C57BL6NJ_G0012289.1 mouse_genomes_project 3 6344968 6347847 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007865.1 MGP_C57BL6NJ_G0006430.1 mouse_genomes_project 3 135075428 135079098 + Gm42586 lincRNA lincRNA MGP_C57BL6NJ_T0101625.1 MGP_C57BL6NJ_G0039671.1 mouse_genomes_project 3 162930073 162930196 + Gm25757 snoRNA snoRNA MGP_C57BL6NJ_T0014659.1 MGP_C57BL6NJ_G0012704.1 mouse_genomes_project 3 138323937 138324449 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063400.1 MGP_C57BL6NJ_G0028125.1 mouse_genomes_project 3 110068361 110073324 + MGP_C57BL6NJ_P0063400 Ppm1j protein_coding protein_coding MGP_C57BL6NJ_T0063401.1 MGP_C57BL6NJ_G0028125.1 mouse_genomes_project 3 110072914 110073324 + Ppm1j protein_coding retained_intron MGP_C57BL6NJ_T0062541.1 MGP_C57BL6NJ_G0027894.1 mouse_genomes_project 3 94340353 94342627 + MGP_C57BL6NJ_P0062541 S100a4 protein_coding protein_coding MGP_C57BL6NJ_T0062542.1 MGP_C57BL6NJ_G0027894.1 mouse_genomes_project 3 94341492 94342415 + MGP_C57BL6NJ_P0062542 S100a4 protein_coding protein_coding MGP_C57BL6NJ_T0014684.1 MGP_C57BL6NJ_G0012729.1 mouse_genomes_project 3 145526568 145527292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061383.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60008214 60110663 + MGP_C57BL6NJ_P0061383 Med12l protein_coding protein_coding MGP_C57BL6NJ_T0061384.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60008876 60338819 + MGP_C57BL6NJ_P0061384 Med12l protein_coding protein_coding MGP_C57BL6NJ_T0061385.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60009367 60338547 + MGP_C57BL6NJ_P0061385 Med12l protein_coding protein_coding MGP_C57BL6NJ_T0061386.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60009367 60338547 + MGP_C57BL6NJ_P0061386 Med12l protein_coding protein_coding MGP_C57BL6NJ_T0061387.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60009367 60109563 + MGP_C57BL6NJ_P0061387 Med12l protein_coding protein_coding MGP_C57BL6NJ_T0061407.1 MGP_C57BL6NJ_G0027660.1 mouse_genomes_project 3 60275994 60336039 + MGP_C57BL6NJ_P0061407 Med12l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063068.1 MGP_C57BL6NJ_G0028050.1 mouse_genomes_project 3 101179401 101254708 + MGP_C57BL6NJ_P0063068 Rnf115 protein_coding protein_coding MGP_C57BL6NJ_T0063069.1 MGP_C57BL6NJ_G0028050.1 mouse_genomes_project 3 101179409 101255194 + MGP_C57BL6NJ_P0063069 Rnf115 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063070.1 MGP_C57BL6NJ_G0028050.1 mouse_genomes_project 3 101179576 101247288 + Rnf115 protein_coding processed_transcript MGP_C57BL6NJ_T0014722.1 MGP_C57BL6NJ_G0012767.1 mouse_genomes_project 3 161813812 161816097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062664.1 MGP_C57BL6NJ_G0027971.1 mouse_genomes_project 3 98628879 98637483 - MGP_C57BL6NJ_P0062664 Riiad1 protein_coding protein_coding MGP_C57BL6NJ_T0062665.1 MGP_C57BL6NJ_G0027971.1 mouse_genomes_project 3 98628881 98644097 - Riiad1 protein_coding processed_transcript MGP_C57BL6NJ_T0062666.1 MGP_C57BL6NJ_G0027971.1 mouse_genomes_project 3 98631666 98636814 - Riiad1 protein_coding processed_transcript MGP_C57BL6NJ_T0100248.1 MGP_C57BL6NJ_G0038294.1 mouse_genomes_project 3 46037867 46037985 + Gm23337 snRNA snRNA MGP_C57BL6NJ_T0011808.1 MGP_C57BL6NJ_G0009893.1 mouse_genomes_project 3 105596325 105596587 - Gm23465 misc_RNA misc_RNA MGP_C57BL6NJ_T0001479.1 MGP_C57BL6NJ_G0001379.1 mouse_genomes_project 3 136755962 136759414 + TEC TEC MGP_C57BL6NJ_T0063858.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123011971 123085623 - MGP_C57BL6NJ_P0063858 Agl protein_coding protein_coding MGP_C57BL6NJ_T0063859.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123014473 123084839 - MGP_C57BL6NJ_P0063859 Agl protein_coding protein_coding MGP_C57BL6NJ_T0063860.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123015017 123055035 - MGP_C57BL6NJ_P0063860 Agl protein_coding protein_coding MGP_C57BL6NJ_T0063861.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123020038 123085499 - MGP_C57BL6NJ_P0063861 Agl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063862.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123027521 123085586 - MGP_C57BL6NJ_P0063862 Agl protein_coding protein_coding MGP_C57BL6NJ_T0063863.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123053797 123055535 - MGP_C57BL6NJ_P0063863 Agl protein_coding protein_coding MGP_C57BL6NJ_T0063864.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123065484 123085488 - Agl protein_coding retained_intron MGP_C57BL6NJ_T0063865.1 MGP_C57BL6NJ_G0028234.1 mouse_genomes_project 3 123066832 123085308 - MGP_C57BL6NJ_P0063865 Agl protein_coding protein_coding MGP_C57BL6NJ_T0001455.1 MGP_C57BL6NJ_G0001356.1 mouse_genomes_project 3 133767455 133769057 + TEC TEC MGP_C57BL6NJ_T0064272.1 MGP_C57BL6NJ_G0028307.1 mouse_genomes_project 3 140218104 140383424 + MGP_C57BL6NJ_P0064272 Tbck protein_coding protein_coding MGP_C57BL6NJ_T0064273.1 MGP_C57BL6NJ_G0028307.1 mouse_genomes_project 3 140218128 140235473 + Tbck protein_coding retained_intron MGP_C57BL6NJ_T0064274.1 MGP_C57BL6NJ_G0028307.1 mouse_genomes_project 3 140218160 140344866 + Tbck protein_coding processed_transcript MGP_C57BL6NJ_T0064275.1 MGP_C57BL6NJ_G0028307.1 mouse_genomes_project 3 140334941 140380281 + Tbck protein_coding processed_transcript MGP_C57BL6NJ_T0001315.1 MGP_C57BL6NJ_G0001218.1 mouse_genomes_project 3 51686149 51690103 + TEC TEC MGP_C57BL6NJ_T0001469.1 MGP_C57BL6NJ_G0001370.1 mouse_genomes_project 3 134441863 134445492 - TEC TEC MGP_C57BL6NJ_T0063435.1 MGP_C57BL6NJ_G0028132.1 mouse_genomes_project 3 110376511 110389737 + MGP_C57BL6NJ_P0063435 4930564D02Rik protein_coding protein_coding MGP_C57BL6NJ_T0064458.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381348 146393692 + MGP_C57BL6NJ_P0064458 Adh5 protein_coding protein_coding MGP_C57BL6NJ_T0064459.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381366 146384204 + Adh5 protein_coding retained_intron MGP_C57BL6NJ_T0064460.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381367 146385092 + Adh5 protein_coding retained_intron MGP_C57BL6NJ_T0064461.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381425 146383659 + Adh5 protein_coding retained_intron MGP_C57BL6NJ_T0064462.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381425 146386195 + MGP_C57BL6NJ_P0064462 Adh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064463.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146381436 146392996 + MGP_C57BL6NJ_P0064463 Adh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064464.1 MGP_C57BL6NJ_G0028344.1 mouse_genomes_project 3 146392597 146393436 + Adh5 protein_coding retained_intron MGP_C57BL6NJ_T0014405.1 MGP_C57BL6NJ_G0012450.1 mouse_genomes_project 3 59641241 59642188 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014624.1 MGP_C57BL6NJ_G0012669.1 mouse_genomes_project 3 123552069 123552649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064805.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161346975 161399183 + MGP_C57BL6NJ_P0064805 Usp33 protein_coding protein_coding MGP_C57BL6NJ_T0064806.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161346975 161399462 + MGP_C57BL6NJ_P0064806 Usp33 protein_coding protein_coding MGP_C57BL6NJ_T0064807.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161346986 161399467 + MGP_C57BL6NJ_P0064807 Usp33 protein_coding protein_coding MGP_C57BL6NJ_T0064808.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161347009 161375138 + MGP_C57BL6NJ_P0064808 Usp33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064809.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161347012 161360571 + Usp33 protein_coding retained_intron MGP_C57BL6NJ_T0064810.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161364120 161371724 + Usp33 protein_coding processed_transcript MGP_C57BL6NJ_T0064811.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161366100 161370389 + Usp33 protein_coding retained_intron MGP_C57BL6NJ_T0064812.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161368475 161376854 + Usp33 protein_coding retained_intron MGP_C57BL6NJ_T0064813.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161371662 161378220 + MGP_C57BL6NJ_P0064813 Usp33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064814.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161385280 161398357 + Usp33 protein_coding processed_transcript MGP_C57BL6NJ_T0064815.1 MGP_C57BL6NJ_G0028405.1 mouse_genomes_project 3 161385768 161387487 + Usp33 protein_coding retained_intron MGP_C57BL6NJ_T0061623.1 MGP_C57BL6NJ_G0027717.1 mouse_genomes_project 3 71672158 71714862 - MGP_C57BL6NJ_P0061623 Sptssb protein_coding protein_coding MGP_C57BL6NJ_T0061624.1 MGP_C57BL6NJ_G0027717.1 mouse_genomes_project 3 71673194 71714844 - MGP_C57BL6NJ_P0061624 Sptssb protein_coding protein_coding MGP_C57BL6NJ_T0060670.1 MGP_C57BL6NJ_G0027529.1 mouse_genomes_project 3 26110685 26429900 - MGP_C57BL6NJ_P0060670 Fndc3b protein_coding protein_coding MGP_C57BL6NJ_T0060671.1 MGP_C57BL6NJ_G0027529.1 mouse_genomes_project 3 26110685 26429941 - MGP_C57BL6NJ_P0060671 Fndc3b protein_coding protein_coding MGP_C57BL6NJ_T0060672.1 MGP_C57BL6NJ_G0027529.1 mouse_genomes_project 3 26201350 26430809 - Fndc3b protein_coding retained_intron MGP_C57BL6NJ_T0060673.1 MGP_C57BL6NJ_G0027529.1 mouse_genomes_project 3 26208353 26430741 - MGP_C57BL6NJ_P0060673 Fndc3b protein_coding protein_coding MGP_C57BL6NJ_T0103080.1 MGP_C57BL6NJ_G0040874.1 mouse_genomes_project 3 86815569 86838424 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007718.1 MGP_C57BL6NJ_G0006318.1 mouse_genomes_project 3 53364443 53373100 - Gm30292 lincRNA lincRNA MGP_C57BL6NJ_T0064592.1 MGP_C57BL6NJ_G0028370.1 mouse_genomes_project 3 153500831 153531352 - MGP_C57BL6NJ_P0064592 Clca1 protein_coding protein_coding MGP_C57BL6NJ_T0064593.1 MGP_C57BL6NJ_G0028370.1 mouse_genomes_project 3 153501571 153506188 - Clca1 protein_coding processed_transcript MGP_C57BL6NJ_T0064594.1 MGP_C57BL6NJ_G0028370.1 mouse_genomes_project 3 153510975 153516488 - Clca1 protein_coding processed_transcript MGP_C57BL6NJ_T0014472.1 MGP_C57BL6NJ_G0012517.1 mouse_genomes_project 3 77827519 77828821 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001374.1 MGP_C57BL6NJ_G0001275.1 mouse_genomes_project 3 77447898 77450118 - TEC TEC MGP_C57BL6NJ_T0101573.1 MGP_C57BL6NJ_G0039619.1 mouse_genomes_project 3 56754931 56755063 - Gm22784 snoRNA snoRNA MGP_C57BL6NJ_T0062561.1 MGP_C57BL6NJ_G0027905.1 mouse_genomes_project 3 96079891 96081674 - MGP_C57BL6NJ_P0062561 Prr9 protein_coding protein_coding MGP_C57BL6NJ_T0100318.1 MGP_C57BL6NJ_G0038364.1 mouse_genomes_project 3 151053473 151053578 - Gm24457 snRNA snRNA MGP_C57BL6NJ_T0101593.1 MGP_C57BL6NJ_G0039639.1 mouse_genomes_project 3 92586266 92586396 - Gm24403 snoRNA snoRNA MGP_C57BL6NJ_T0063402.1 MGP_C57BL6NJ_G0028126.1 mouse_genomes_project 3 110076270 110081768 + MGP_C57BL6NJ_P0063402 Rhoc protein_coding protein_coding MGP_C57BL6NJ_T0063403.1 MGP_C57BL6NJ_G0028126.1 mouse_genomes_project 3 110076533 110080283 + MGP_C57BL6NJ_P0063403 Rhoc protein_coding protein_coding MGP_C57BL6NJ_T0063404.1 MGP_C57BL6NJ_G0028126.1 mouse_genomes_project 3 110079288 110080186 + Rhoc protein_coding retained_intron MGP_C57BL6NJ_T0061069.1 MGP_C57BL6NJ_G0027601.1 mouse_genomes_project 3 40447244 40449615 - MGP_C57BL6NJ_P0061069 1700034I23Rik protein_coding protein_coding MGP_C57BL6NJ_T0014287.1 MGP_C57BL6NJ_G0012332.1 mouse_genomes_project 3 18726769 18727742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061712.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83500409 83631888 - MGP_C57BL6NJ_P0061712 Gria2 protein_coding protein_coding MGP_C57BL6NJ_T0061713.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83506725 83631888 - MGP_C57BL6NJ_P0061713 Gria2 protein_coding protein_coding MGP_C57BL6NJ_T0061714.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83506970 83631632 - MGP_C57BL6NJ_P0061714 Gria2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061715.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83511211 83631844 - Gria2 protein_coding retained_intron MGP_C57BL6NJ_T0061716.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83524329 83631703 - Gria2 protein_coding retained_intron MGP_C57BL6NJ_T0061717.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83526244 83631777 - Gria2 protein_coding retained_intron MGP_C57BL6NJ_T0061718.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83527484 83631833 - Gria2 protein_coding retained_intron MGP_C57BL6NJ_T0061719.1 MGP_C57BL6NJ_G0027738.1 mouse_genomes_project 3 83629088 83631746 - Gria2 protein_coding retained_intron MGP_C57BL6NJ_T0063142.1 MGP_C57BL6NJ_G0028068.1 mouse_genomes_project 3 102948856 102978681 + MGP_C57BL6NJ_P0063142 Hmgcs2 protein_coding protein_coding MGP_C57BL6NJ_T0063143.1 MGP_C57BL6NJ_G0028068.1 mouse_genomes_project 3 102948856 102978687 + MGP_C57BL6NJ_P0063143 Hmgcs2 protein_coding protein_coding MGP_C57BL6NJ_T0061184.1 MGP_C57BL6NJ_G0027616.1 mouse_genomes_project 3 51968850 51979932 + Rab33b protein_coding processed_transcript MGP_C57BL6NJ_T0061185.1 MGP_C57BL6NJ_G0027616.1 mouse_genomes_project 3 51968860 51969457 + MGP_C57BL6NJ_P0061185 Rab33b protein_coding protein_coding MGP_C57BL6NJ_T0061186.1 MGP_C57BL6NJ_G0027616.1 mouse_genomes_project 3 51968896 51982679 + MGP_C57BL6NJ_P0061186 Rab33b protein_coding protein_coding MGP_C57BL6NJ_T0063362.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109047024 109104047 + MGP_C57BL6NJ_P0063362 Ptpn22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063363.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109047168 109104060 + MGP_C57BL6NJ_P0063363 Ptpn22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063364.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109047784 109064692 + Ptpn22 protein_coding processed_transcript MGP_C57BL6NJ_T0063365.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109065993 109069352 + Ptpn22 protein_coding retained_intron MGP_C57BL6NJ_T0063366.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109075444 109079108 + Ptpn22 protein_coding retained_intron MGP_C57BL6NJ_T0063367.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109075534 109095210 + Ptpn22 protein_coding processed_transcript MGP_C57BL6NJ_T0063368.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109079576 109101261 + Ptpn22 protein_coding retained_intron MGP_C57BL6NJ_T0063369.1 MGP_C57BL6NJ_G0028118.1 mouse_genomes_project 3 109093863 109104049 + Ptpn22 protein_coding retained_intron MGP_C57BL6NJ_T0014312.1 MGP_C57BL6NJ_G0012357.1 mouse_genomes_project 3 32026032 32026367 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007766.1 MGP_C57BL6NJ_G0006356.1 mouse_genomes_project 3 86065821 86069792 - Gm10710 lincRNA lincRNA MGP_C57BL6NJ_T0062459.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93956240 93966203 + MGP_C57BL6NJ_P0062459 Crtc2 protein_coding protein_coding MGP_C57BL6NJ_T0062460.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93956373 93966198 + Crtc2 protein_coding retained_intron MGP_C57BL6NJ_T0062461.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93956373 93966198 + Crtc2 protein_coding retained_intron MGP_C57BL6NJ_T0062462.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93956401 93960711 + Crtc2 protein_coding retained_intron MGP_C57BL6NJ_T0062463.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93956418 93966198 + Crtc2 protein_coding processed_transcript MGP_C57BL6NJ_T0062464.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93959372 93966198 + MGP_C57BL6NJ_P0062464 Crtc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062465.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93960128 93961570 + Crtc2 protein_coding retained_intron MGP_C57BL6NJ_T0062466.1 MGP_C57BL6NJ_G0027878.1 mouse_genomes_project 3 93961042 93962399 + Crtc2 protein_coding retained_intron MGP_C57BL6NJ_T0063116.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102283949 102296615 + MGP_C57BL6NJ_P0063116 Prkab2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063117.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102283968 102299628 + MGP_C57BL6NJ_P0063117 Prkab2 protein_coding protein_coding MGP_C57BL6NJ_T0063118.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102283970 102296749 + MGP_C57BL6NJ_P0063118 Prkab2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063119.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102292345 102298921 + Prkab2 protein_coding retained_intron MGP_C57BL6NJ_T0063120.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102293155 102298897 + Prkab2 protein_coding retained_intron MGP_C57BL6NJ_T0063121.1 MGP_C57BL6NJ_G0028061.1 mouse_genomes_project 3 102296013 102296864 + Prkab2 protein_coding processed_transcript MGP_C57BL6NJ_T0007769.1 MGP_C57BL6NJ_G0006359.1 mouse_genomes_project 3 87404109 87432931 - 4930565D16Rik lincRNA lincRNA MGP_C57BL6NJ_T0001285.1 MGP_C57BL6NJ_G0001188.1 mouse_genomes_project 3 36979239 36985205 + TEC TEC MGP_C57BL6NJ_T0014482.1 MGP_C57BL6NJ_G0012527.1 mouse_genomes_project 3 81421114 81421960 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064443.1 MGP_C57BL6NJ_G0028339.1 mouse_genomes_project 3 146071110 146091405 - MGP_C57BL6NJ_P0064443 4930579F01Rik protein_coding protein_coding MGP_C57BL6NJ_T0064444.1 MGP_C57BL6NJ_G0028339.1 mouse_genomes_project 3 146071167 146091445 - MGP_C57BL6NJ_P0064444 4930579F01Rik protein_coding protein_coding MGP_C57BL6NJ_T0064445.1 MGP_C57BL6NJ_G0028339.1 mouse_genomes_project 3 146088466 146099822 - 4930579F01Rik protein_coding processed_transcript MGP_C57BL6NJ_T0007896.1 MGP_C57BL6NJ_G0006458.1 mouse_genomes_project 3 145674572 145682662 - Gm31678 lincRNA lincRNA MGP_C57BL6NJ_T0007676.1 MGP_C57BL6NJ_G0006288.1 mouse_genomes_project 3 35707121 35709455 - Gm43204 lincRNA lincRNA MGP_C57BL6NJ_T0103068.1 MGP_C57BL6NJ_G0040862.1 mouse_genomes_project 3 21429009 21431512 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014476.1 MGP_C57BL6NJ_G0012521.1 mouse_genomes_project 3 80173643 80174914 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007617.1 MGP_C57BL6NJ_G0006246.1 mouse_genomes_project 3 6553506 6563943 + 4930539M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0001496.1 MGP_C57BL6NJ_G0001396.1 mouse_genomes_project 3 143144723 143153570 - TEC TEC MGP_C57BL6NJ_T0004381.1 MGP_C57BL6NJ_G0003847.1 mouse_genomes_project 3 36712906 36714043 + Gm12534 antisense antisense MGP_C57BL6NJ_T0014297.1 MGP_C57BL6NJ_G0012342.1 mouse_genomes_project 3 21743916 21744292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101626.1 MGP_C57BL6NJ_G0039672.1 mouse_genomes_project 3 162966313 162966438 + Gm24395 snoRNA snoRNA MGP_C57BL6NJ_T0001380.1 MGP_C57BL6NJ_G0001281.1 mouse_genomes_project 3 80319187 80320686 - TEC TEC MGP_C57BL6NJ_T0007633.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15959514 15969924 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007634.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15959550 15969382 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007635.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15963489 15964975 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007636.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15963497 15969438 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007637.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15963514 15969351 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007638.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15964465 15980511 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0007639.1 MGP_C57BL6NJ_G0006257.1 mouse_genomes_project 3 15965313 15969438 + Mir124-2hg lincRNA lincRNA MGP_C57BL6NJ_T0001448.1 MGP_C57BL6NJ_G0001349.1 mouse_genomes_project 3 131317904 131318150 - TEC TEC MGP_C57BL6NJ_T0014236.1 MGP_C57BL6NJ_G0012281.1 mouse_genomes_project 3 4783201 4783321 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062017.1 MGP_C57BL6NJ_G0027809.1 mouse_genomes_project 3 91739084 91744792 - MGP_C57BL6NJ_P0062017 Tmem79 protein_coding protein_coding MGP_C57BL6NJ_T0062018.1 MGP_C57BL6NJ_G0027809.1 mouse_genomes_project 3 91739475 91744556 - MGP_C57BL6NJ_P0062018 Tmem79 protein_coding protein_coding MGP_C57BL6NJ_T0062019.1 MGP_C57BL6NJ_G0027809.1 mouse_genomes_project 3 91739476 91744742 - MGP_C57BL6NJ_P0062019 Tmem79 protein_coding protein_coding MGP_C57BL6NJ_T0062020.1 MGP_C57BL6NJ_G0027809.1 mouse_genomes_project 3 91743425 91746436 - MGP_C57BL6NJ_P0062020 Tmem79 protein_coding protein_coding MGP_C57BL6NJ_T0007677.1 MGP_C57BL6NJ_G0006289.1 mouse_genomes_project 3 35946638 35953636 - Gm11548 lincRNA lincRNA MGP_C57BL6NJ_T0064303.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141016932 141094240 - MGP_C57BL6NJ_P0064303 Tet2 protein_coding protein_coding MGP_C57BL6NJ_T0064304.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141016936 141027749 - Tet2 protein_coding retained_intron MGP_C57BL6NJ_T0064305.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141017092 141094218 - MGP_C57BL6NJ_P0064305 Tet2 protein_coding protein_coding MGP_C57BL6NJ_T0064306.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141019070 141025041 - Tet2 protein_coding retained_intron MGP_C57BL6NJ_T0064307.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141020750 141029494 - MGP_C57BL6NJ_P0064307 Tet2 protein_coding protein_coding MGP_C57BL6NJ_T0064308.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141027998 141031850 - Tet2 protein_coding retained_intron MGP_C57BL6NJ_T0064309.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141031979 141033606 - Tet2 protein_coding retained_intron MGP_C57BL6NJ_T0064310.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141041852 141094989 - MGP_C57BL6NJ_P0064310 Tet2 protein_coding protein_coding MGP_C57BL6NJ_T0064311.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141064764 141094152 - Tet2 protein_coding retained_intron MGP_C57BL6NJ_T0064312.1 MGP_C57BL6NJ_G0028313.1 mouse_genomes_project 3 141088614 141094136 - Tet2 protein_coding processed_transcript MGP_C57BL6NJ_T0014726.1 MGP_C57BL6NJ_G0012771.1 mouse_genomes_project 3 165349332 165350306 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014411.1 MGP_C57BL6NJ_G0012456.1 mouse_genomes_project 3 61097431 61097946 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014716.1 MGP_C57BL6NJ_G0012761.1 mouse_genomes_project 3 157370957 157371473 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100282.1 MGP_C57BL6NJ_G0038328.1 mouse_genomes_project 3 93877405 93877510 + Gm24185 snRNA snRNA MGP_C57BL6NJ_T0100324.1 MGP_C57BL6NJ_G0038370.1 mouse_genomes_project 3 166619289 166619396 - Gm23725 snRNA snRNA MGP_C57BL6NJ_T0004540.1 MGP_C57BL6NJ_G0003956.1 mouse_genomes_project 3 145767254 145769456 - Gm43087 antisense antisense MGP_C57BL6NJ_T0007738.1 MGP_C57BL6NJ_G0006333.1 mouse_genomes_project 3 69229543 69231800 - 4930402C01Rik lincRNA lincRNA MGP_C57BL6NJ_T0014264.1 MGP_C57BL6NJ_G0012309.1 mouse_genomes_project 3 12228979 12229144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099265.1 MGP_C57BL6NJ_G0037329.1 mouse_genomes_project 3 92175572 92175699 + Gm25820 scaRNA scaRNA MGP_C57BL6NJ_T0007895.1 MGP_C57BL6NJ_G0006457.1 mouse_genomes_project 3 145564552 145572694 + Gm42610 lincRNA lincRNA MGP_C57BL6NJ_T0061040.1 MGP_C57BL6NJ_G0027594.1 mouse_genomes_project 3 38449646 38587274 + MGP_C57BL6NJ_P0061040 Fat4 protein_coding protein_coding MGP_C57BL6NJ_T0061041.1 MGP_C57BL6NJ_G0027594.1 mouse_genomes_project 3 38453648 38522187 + Fat4 protein_coding retained_intron MGP_C57BL6NJ_T0007789.1 MGP_C57BL6NJ_G0006368.1 mouse_genomes_project 3 93646386 93648952 + Gm19710 lincRNA lincRNA MGP_C57BL6NJ_T0007790.1 MGP_C57BL6NJ_G0006368.1 mouse_genomes_project 3 93648741 93674595 + Gm19710 lincRNA lincRNA MGP_C57BL6NJ_T0100300.1 MGP_C57BL6NJ_G0038346.1 mouse_genomes_project 3 109986169 109986259 + Gm24223 snRNA snRNA MGP_C57BL6NJ_T0063477.1 MGP_C57BL6NJ_G0028144.1 mouse_genomes_project 3 111413824 111421800 - MGP_C57BL6NJ_P0063477 Chil5 protein_coding protein_coding MGP_C57BL6NJ_T0063478.1 MGP_C57BL6NJ_G0028144.1 mouse_genomes_project 3 111413870 111421805 - MGP_C57BL6NJ_P0063478 Chil5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063479.1 MGP_C57BL6NJ_G0028144.1 mouse_genomes_project 3 111414037 111431410 - MGP_C57BL6NJ_P0063479 Chil5 protein_coding protein_coding MGP_C57BL6NJ_T0004352.1 MGP_C57BL6NJ_G0003829.1 mouse_genomes_project 3 13533830 13537081 + antisense antisense MGP_C57BL6NJ_T0060504.1 MGP_C57BL6NJ_G0027489.1 mouse_genomes_project 3 12402221 12429822 + MGP_C57BL6NJ_P0060504 Slc7a12 protein_coding protein_coding MGP_C57BL6NJ_T0060505.1 MGP_C57BL6NJ_G0027489.1 mouse_genomes_project 3 12402224 12429716 + MGP_C57BL6NJ_P0060505 Slc7a12 protein_coding protein_coding MGP_C57BL6NJ_T0060506.1 MGP_C57BL6NJ_G0027489.1 mouse_genomes_project 3 12402297 12429716 + MGP_C57BL6NJ_P0060506 Slc7a12 protein_coding protein_coding MGP_C57BL6NJ_T0014666.1 MGP_C57BL6NJ_G0012711.1 mouse_genomes_project 3 141778710 141779151 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060580.1 MGP_C57BL6NJ_G0027512.1 mouse_genomes_project 3 17932999 17980300 + MGP_C57BL6NJ_P0060580 Trim55 protein_coding protein_coding MGP_C57BL6NJ_T0060581.1 MGP_C57BL6NJ_G0027512.1 mouse_genomes_project 3 17933033 17938564 + Trim55 protein_coding processed_transcript MGP_C57BL6NJ_T0099401.1 MGP_C57BL6NJ_G0037458.1 mouse_genomes_project 3 107158351 107159636 + Gm43244 sense_intronic sense_intronic MGP_C57BL6NJ_T0014586.1 MGP_C57BL6NJ_G0012631.1 mouse_genomes_project 3 113525701 113525849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001287.1 MGP_C57BL6NJ_G0001190.1 mouse_genomes_project 3 37146697 37150043 + TEC TEC MGP_C57BL6NJ_T0007843.1 MGP_C57BL6NJ_G0006415.1 mouse_genomes_project 3 122732653 122737038 + Gm26530 lincRNA lincRNA MGP_C57BL6NJ_T0061342.1 MGP_C57BL6NJ_G0027650.1 mouse_genomes_project 3 58555333 58588933 - MGP_C57BL6NJ_P0061342 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061343.1 MGP_C57BL6NJ_G0027650.1 mouse_genomes_project 3 58555377 58588480 - MGP_C57BL6NJ_P0061343 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061344.1 MGP_C57BL6NJ_G0027650.1 mouse_genomes_project 3 58563870 58588669 - MGP_C57BL6NJ_P0061344 protein_coding protein_coding MGP_C57BL6NJ_T0061345.1 MGP_C57BL6NJ_G0027650.1 mouse_genomes_project 3 58565710 58588671 - MGP_C57BL6NJ_P0061345 protein_coding protein_coding MGP_C57BL6NJ_T0014645.1 MGP_C57BL6NJ_G0012690.1 mouse_genomes_project 3 131216720 131216967 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102241.1 MGP_C57BL6NJ_G0040235.1 mouse_genomes_project 3 101044432 101073443 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102242.1 MGP_C57BL6NJ_G0040235.1 mouse_genomes_project 3 101044435 101073442 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102243.1 MGP_C57BL6NJ_G0040235.1 mouse_genomes_project 3 101045397 101047869 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0064174.1 MGP_C57BL6NJ_G0028287.1 mouse_genomes_project 3 137201340 137217433 - MGP_C57BL6NJ_P0064174 Lrit3 protein_coding protein_coding MGP_C57BL6NJ_T0064175.1 MGP_C57BL6NJ_G0028287.1 mouse_genomes_project 3 137201750 137217433 - MGP_C57BL6NJ_P0064175 Lrit3 protein_coding protein_coding MGP_C57BL6NJ_T0064176.1 MGP_C57BL6NJ_G0028287.1 mouse_genomes_project 3 137204354 137213924 - Lrit3 protein_coding retained_intron MGP_C57BL6NJ_T0063023.1 MGP_C57BL6NJ_G0028039.1 mouse_genomes_project 3 101009246 101028064 - MGP_C57BL6NJ_P0063023 Polr3gl protein_coding protein_coding MGP_C57BL6NJ_T0063024.1 MGP_C57BL6NJ_G0028039.1 mouse_genomes_project 3 101009772 101013105 - Polr3gl protein_coding retained_intron MGP_C57BL6NJ_T0063025.1 MGP_C57BL6NJ_G0028039.1 mouse_genomes_project 3 101009780 101011534 - Polr3gl protein_coding retained_intron MGP_C57BL6NJ_T0007771.1 MGP_C57BL6NJ_G0006361.1 mouse_genomes_project 3 88728238 88737312 - Gm42812 lincRNA lincRNA MGP_C57BL6NJ_T0007876.1 MGP_C57BL6NJ_G0006439.1 mouse_genomes_project 3 138346690 138348189 + Gm36520 lincRNA lincRNA MGP_C57BL6NJ_T0001304.1 MGP_C57BL6NJ_G0001207.1 mouse_genomes_project 3 45445694 45448832 + TEC TEC MGP_C57BL6NJ_T0063509.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112184966 112238592 + MGP_C57BL6NJ_P0063509 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063510.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112184977 112234886 + Lrif1 protein_coding processed_transcript MGP_C57BL6NJ_T0063511.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224415 112234899 + MGP_C57BL6NJ_P0063511 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063512.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224580 112239265 + MGP_C57BL6NJ_P0063512 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063513.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224580 112237070 + MGP_C57BL6NJ_P0063513 Lrif1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063514.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224595 112234737 + MGP_C57BL6NJ_P0063514 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063515.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224612 112237306 + Lrif1 protein_coding retained_intron MGP_C57BL6NJ_T0063516.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224613 112229350 + Lrif1 protein_coding retained_intron MGP_C57BL6NJ_T0063517.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224613 112236275 + Lrif1 protein_coding processed_transcript MGP_C57BL6NJ_T0063518.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224623 112239262 + MGP_C57BL6NJ_P0063518 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063519.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112224654 112234751 + MGP_C57BL6NJ_P0063519 Lrif1 protein_coding protein_coding MGP_C57BL6NJ_T0063520.1 MGP_C57BL6NJ_G0028152.1 mouse_genomes_project 3 112235601 112236515 + Lrif1 protein_coding retained_intron MGP_C57BL6NJ_T0014250.1 MGP_C57BL6NJ_G0012295.1 mouse_genomes_project 3 7836493 7836625 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001335.1 MGP_C57BL6NJ_G0001236.1 mouse_genomes_project 3 52523086 52526378 - TEC TEC MGP_C57BL6NJ_T0064908.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164300803 164309332 - MGP_C57BL6NJ_P0064908 Fpgt protein_coding protein_coding MGP_C57BL6NJ_T0064909.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164303604 164309126 - Fpgt protein_coding processed_transcript MGP_C57BL6NJ_T0064910.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164304913 164306405 - Fpgt protein_coding retained_intron MGP_C57BL6NJ_T0064911.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164306828 164309297 - Fpgt protein_coding retained_intron MGP_C57BL6NJ_T0064912.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164307253 164308484 - Fpgt protein_coding processed_transcript MGP_C57BL6NJ_T0064913.1 MGP_C57BL6NJ_G0028421.1 mouse_genomes_project 3 164307338 164309156 - Fpgt protein_coding processed_transcript MGP_C57BL6NJ_T0014500.1 MGP_C57BL6NJ_G0012545.1 mouse_genomes_project 3 90221101 90221397 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014228.1 MGP_C57BL6NJ_G0012273.1 mouse_genomes_project 3 1868159 1868279 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014435.1 MGP_C57BL6NJ_G0012480.1 mouse_genomes_project 3 68156455 68157202 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100315.1 MGP_C57BL6NJ_G0038361.1 mouse_genomes_project 3 145593328 145593566 + Gm25080 snRNA snRNA MGP_C57BL6NJ_T0014386.1 MGP_C57BL6NJ_G0012431.1 mouse_genomes_project 3 54310287 54310753 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061408.1 MGP_C57BL6NJ_G0027666.1 mouse_genomes_project 3 60336871 60370165 - MGP_C57BL6NJ_P0061408 Igsf10 protein_coding protein_coding MGP_C57BL6NJ_T0061409.1 MGP_C57BL6NJ_G0027666.1 mouse_genomes_project 3 60338061 60370068 - MGP_C57BL6NJ_P0061409 Igsf10 protein_coding protein_coding MGP_C57BL6NJ_T0061410.1 MGP_C57BL6NJ_G0027666.1 mouse_genomes_project 3 60338061 60370303 - MGP_C57BL6NJ_P0061410 Igsf10 protein_coding protein_coding MGP_C57BL6NJ_T0061411.1 MGP_C57BL6NJ_G0027666.1 mouse_genomes_project 3 60365679 60370165 - MGP_C57BL6NJ_P0061411 Igsf10 protein_coding protein_coding MGP_C57BL6NJ_T0001434.1 MGP_C57BL6NJ_G0001335.1 mouse_genomes_project 3 127824105 127826727 + TEC TEC MGP_C57BL6NJ_T0014685.1 MGP_C57BL6NJ_G0012730.1 mouse_genomes_project 3 145796105 145796510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014713.1 MGP_C57BL6NJ_G0012758.1 mouse_genomes_project 3 155265207 155265944 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063009.1 MGP_C57BL6NJ_G0028032.1 mouse_genomes_project 3 100640127 100642821 + MGP_C57BL6NJ_P0063009 Hist2h3b protein_coding protein_coding MGP_C57BL6NJ_T0014696.1 MGP_C57BL6NJ_G0012741.1 mouse_genomes_project 3 148600082 148600632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099429.1 MGP_C57BL6NJ_G0037486.1 mouse_genomes_project 3 110257933 110258865 - Gm43846 sense_intronic sense_intronic MGP_C57BL6NJ_T0100320.1 MGP_C57BL6NJ_G0038366.1 mouse_genomes_project 3 154920262 154920365 - Gm22078 snRNA snRNA MGP_C57BL6NJ_T0063323.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750573 108816063 + MGP_C57BL6NJ_P0063323 Syt6 protein_coding protein_coding MGP_C57BL6NJ_T0063324.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750623 108820296 + MGP_C57BL6NJ_P0063324 Syt6 protein_coding protein_coding MGP_C57BL6NJ_T0063325.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750624 108820296 + MGP_C57BL6NJ_P0063325 Syt6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063326.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750642 108817885 + MGP_C57BL6NJ_P0063326 Syt6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063327.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750720 108816044 + MGP_C57BL6NJ_P0063327 Syt6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063328.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108750795 108820300 + MGP_C57BL6NJ_P0063328 Syt6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063329.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108751404 108762560 + MGP_C57BL6NJ_P0063329 Syt6 protein_coding protein_coding MGP_C57BL6NJ_T0063330.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108751465 108831204 + MGP_C57BL6NJ_P0063330 Syt6 protein_coding protein_coding MGP_C57BL6NJ_T0063331.1 MGP_C57BL6NJ_G0028109.1 mouse_genomes_project 3 108751465 108812692 + MGP_C57BL6NJ_P0063331 Syt6 protein_coding protein_coding MGP_C57BL6NJ_T0063720.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114587093 114595977 - MGP_C57BL6NJ_P0063720 Prpf38b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063721.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114587095 114596008 - MGP_C57BL6NJ_P0063721 Prpf38b protein_coding protein_coding MGP_C57BL6NJ_T0063722.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114587435 114595749 - MGP_C57BL6NJ_P0063722 Prpf38b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063723.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114588549 114589874 - Prpf38b protein_coding retained_intron MGP_C57BL6NJ_T0063724.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114588764 114590407 - Prpf38b protein_coding processed_transcript MGP_C57BL6NJ_T0063725.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114588909 114592262 - Prpf38b protein_coding processed_transcript MGP_C57BL6NJ_T0063726.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114590849 114595991 - Prpf38b protein_coding retained_intron MGP_C57BL6NJ_T0063727.1 MGP_C57BL6NJ_G0028204.1 mouse_genomes_project 3 114590852 114594910 - Prpf38b protein_coding retained_intron MGP_C57BL6NJ_T0007916.1 MGP_C57BL6NJ_G0006476.1 mouse_genomes_project 3 151989515 151991293 + Gm42704 lincRNA lincRNA MGP_C57BL6NJ_T0014515.1 MGP_C57BL6NJ_G0012560.1 mouse_genomes_project 3 95971651 95971996 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014425.1 MGP_C57BL6NJ_G0012470.1 mouse_genomes_project 3 65544934 65545183 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063914.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127855396 127943405 - MGP_C57BL6NJ_P0063914 Tmem56 protein_coding protein_coding MGP_C57BL6NJ_T0063915.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127855643 127893764 - MGP_C57BL6NJ_P0063915 Tmem56 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063916.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127855643 127922010 - MGP_C57BL6NJ_P0063916 Tmem56 protein_coding protein_coding MGP_C57BL6NJ_T0063917.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127855643 127921984 - MGP_C57BL6NJ_P0063917 Tmem56 protein_coding protein_coding MGP_C57BL6NJ_T0063918.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127859673 127911561 - MGP_C57BL6NJ_P0063918 Tmem56 protein_coding protein_coding MGP_C57BL6NJ_T0063919.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127885039 127943405 - MGP_C57BL6NJ_P0063919 Tmem56 protein_coding protein_coding MGP_C57BL6NJ_T0063920.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127885083 127888239 - Tmem56 protein_coding retained_intron MGP_C57BL6NJ_T0063921.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127892387 127943302 - Tmem56 protein_coding processed_transcript MGP_C57BL6NJ_T0063922.1 MGP_C57BL6NJ_G0028244.1 mouse_genomes_project 3 127892440 127943309 - Tmem56 protein_coding processed_transcript MGP_C57BL6NJ_T0061546.1 MGP_C57BL6NJ_G0027698.1 mouse_genomes_project 3 69025043 69053730 + MGP_C57BL6NJ_P0061546 Mlf1 protein_coding protein_coding MGP_C57BL6NJ_T0061547.1 MGP_C57BL6NJ_G0027698.1 mouse_genomes_project 3 69025071 69032493 + Mlf1 protein_coding processed_transcript MGP_C57BL6NJ_T0061548.1 MGP_C57BL6NJ_G0027698.1 mouse_genomes_project 3 69025088 69049031 + MGP_C57BL6NJ_P0061548 Mlf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061549.1 MGP_C57BL6NJ_G0027698.1 mouse_genomes_project 3 69025094 69053735 + MGP_C57BL6NJ_P0061549 Mlf1 protein_coding protein_coding MGP_C57BL6NJ_T0064987.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169348920 169451872 + MGP_C57BL6NJ_P0064987 Wls protein_coding protein_coding MGP_C57BL6NJ_T0064988.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169348985 169454513 + MGP_C57BL6NJ_P0064988 Wls protein_coding protein_coding MGP_C57BL6NJ_T0064989.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169348987 169421081 + Wls protein_coding retained_intron MGP_C57BL6NJ_T0064990.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169348987 169422395 + Wls protein_coding retained_intron MGP_C57BL6NJ_T0064991.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169348987 169450752 + MGP_C57BL6NJ_P0064991 Wls protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064992.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169349158 169382763 + Wls protein_coding retained_intron MGP_C57BL6NJ_T0064993.1 MGP_C57BL6NJ_G0028433.1 mouse_genomes_project 3 169357736 169360675 + Wls protein_coding retained_intron MGP_C57BL6NJ_T0014466.1 MGP_C57BL6NJ_G0012511.1 mouse_genomes_project 3 74305636 74305855 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001272.1 MGP_C57BL6NJ_G0001175.1 mouse_genomes_project 3 32577700 32579166 - TEC TEC MGP_C57BL6NJ_T0099392.1 MGP_C57BL6NJ_G0037449.1 mouse_genomes_project 3 105434837 105440051 - Gm43466 sense_intronic sense_intronic MGP_C57BL6NJ_T0064137.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135017720 135049223 - MGP_C57BL6NJ_P0064137 Ap1ar protein_coding protein_coding MGP_C57BL6NJ_T0064138.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135017725 135049211 - MGP_C57BL6NJ_P0064138 Ap1ar protein_coding protein_coding MGP_C57BL6NJ_T0064139.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135017980 135019578 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064140.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135022766 135023401 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064141.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135023955 135029096 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064142.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135027130 135028785 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064143.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135031157 135037668 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064144.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135032337 135048931 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064145.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135032338 135034224 - Ap1ar protein_coding retained_intron MGP_C57BL6NJ_T0064146.1 MGP_C57BL6NJ_G0028281.1 mouse_genomes_project 3 135032373 135048956 - MGP_C57BL6NJ_P0064146 Ap1ar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063414.1 MGP_C57BL6NJ_G0028128.1 mouse_genomes_project 3 110113259 110155414 - MGP_C57BL6NJ_P0063414 Capza1 protein_coding protein_coding MGP_C57BL6NJ_T0063415.1 MGP_C57BL6NJ_G0028128.1 mouse_genomes_project 3 110124845 110155309 - MGP_C57BL6NJ_P0063415 Capza1 protein_coding protein_coding MGP_C57BL6NJ_T0063416.1 MGP_C57BL6NJ_G0028128.1 mouse_genomes_project 3 110130822 110133882 - Capza1 protein_coding retained_intron MGP_C57BL6NJ_T0063417.1 MGP_C57BL6NJ_G0028128.1 mouse_genomes_project 3 110133242 110155282 - Capza1 protein_coding retained_intron MGP_C57BL6NJ_T0061922.1 MGP_C57BL6NJ_G0027788.1 mouse_genomes_project 3 91147172 91168425 + MGP_C57BL6NJ_P0061922 Insrr protein_coding protein_coding MGP_C57BL6NJ_T0061923.1 MGP_C57BL6NJ_G0027788.1 mouse_genomes_project 3 91147186 91157224 + Insrr protein_coding retained_intron MGP_C57BL6NJ_T0061924.1 MGP_C57BL6NJ_G0027788.1 mouse_genomes_project 3 91147315 91168376 + MGP_C57BL6NJ_P0061924 Insrr protein_coding protein_coding MGP_C57BL6NJ_T0061925.1 MGP_C57BL6NJ_G0027788.1 mouse_genomes_project 3 91154061 91154927 + Insrr protein_coding processed_transcript MGP_C57BL6NJ_T0062570.1 MGP_C57BL6NJ_G0027913.1 mouse_genomes_project 3 96401624 96402939 + MGP_C57BL6NJ_P0062570 Sprr2j-ps protein_coding protein_coding MGP_C57BL6NJ_T0064149.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136555197 136574824 + MGP_C57BL6NJ_P0064149 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064150.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136555241 136574812 + MGP_C57BL6NJ_P0064150 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064151.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136555245 136574825 + MGP_C57BL6NJ_P0064151 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064152.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136555288 136559897 + MGP_C57BL6NJ_P0064152 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064153.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136559266 136574131 + MGP_C57BL6NJ_P0064153 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064154.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136569165 136572008 + Pitx2 protein_coding retained_intron MGP_C57BL6NJ_T0064155.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136569205 136574822 + MGP_C57BL6NJ_P0064155 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0064156.1 MGP_C57BL6NJ_G0028283.1 mouse_genomes_project 3 136569508 136571858 + MGP_C57BL6NJ_P0064156 Pitx2 protein_coding protein_coding MGP_C57BL6NJ_T0062667.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642056 98649546 + MGP_C57BL6NJ_P0062667 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062668.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642090 98657212 + MGP_C57BL6NJ_P0062668 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062669.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642249 98657217 + MGP_C57BL6NJ_P0062669 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062670.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642586 98657212 + MGP_C57BL6NJ_P0062670 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062671.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642833 98657213 + MGP_C57BL6NJ_P0062671 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062672.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642862 98657216 + MGP_C57BL6NJ_P0062672 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062673.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98642872 98651792 + Celf3 protein_coding retained_intron MGP_C57BL6NJ_T0062674.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98646782 98651435 + Celf3 protein_coding processed_transcript MGP_C57BL6NJ_T0062675.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98646949 98657212 + Celf3 protein_coding processed_transcript MGP_C57BL6NJ_T0062676.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98648554 98657212 + Celf3 protein_coding retained_intron MGP_C57BL6NJ_T0062677.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98648591 98651163 + MGP_C57BL6NJ_P0062677 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062678.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98648598 98651508 + MGP_C57BL6NJ_P0062678 Celf3 protein_coding protein_coding MGP_C57BL6NJ_T0062679.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98649504 98657201 + Celf3 protein_coding retained_intron MGP_C57BL6NJ_T0062680.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98650869 98652835 + Celf3 protein_coding retained_intron MGP_C57BL6NJ_T0062681.1 MGP_C57BL6NJ_G0027972.1 mouse_genomes_project 3 98651425 98654624 + Celf3 protein_coding retained_intron MGP_C57BL6NJ_T0004534.1 MGP_C57BL6NJ_G0003953.1 mouse_genomes_project 3 143153890 143156347 - 4930539J05Rik antisense antisense MGP_C57BL6NJ_T0004535.1 MGP_C57BL6NJ_G0003953.1 mouse_genomes_project 3 143153907 143155441 - 4930539J05Rik antisense antisense MGP_C57BL6NJ_T0063002.1 MGP_C57BL6NJ_G0028027.1 mouse_genomes_project 3 100563572 100565474 - MGP_C57BL6NJ_P0063002 Bola1 protein_coding protein_coding MGP_C57BL6NJ_T0063003.1 MGP_C57BL6NJ_G0028027.1 mouse_genomes_project 3 100563572 100564571 - MGP_C57BL6NJ_P0063003 Bola1 protein_coding protein_coding MGP_C57BL6NJ_T0063004.1 MGP_C57BL6NJ_G0028027.1 mouse_genomes_project 3 100563847 100584328 - MGP_C57BL6NJ_P0063004 Bola1 protein_coding protein_coding MGP_C57BL6NJ_T0062592.1 MGP_C57BL6NJ_G0027933.1 mouse_genomes_project 3 96790629 96792289 - MGP_C57BL6NJ_P0062592 Lce1i protein_coding protein_coding MGP_C57BL6NJ_T0014458.1 MGP_C57BL6NJ_G0012503.1 mouse_genomes_project 3 72000089 72000369 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001253.1 MGP_C57BL6NJ_G0001156.1 mouse_genomes_project 3 26257220 26258449 + TEC TEC MGP_C57BL6NJ_T0004457.1 MGP_C57BL6NJ_G0003903.1 mouse_genomes_project 3 100638548 100643969 - antisense antisense MGP_C57BL6NJ_T0064931.1 MGP_C57BL6NJ_G0028425.1 mouse_genomes_project 3 166989029 167072748 + MGP_C57BL6NJ_P0064931 Ptger3 protein_coding protein_coding MGP_C57BL6NJ_T0064932.1 MGP_C57BL6NJ_G0028425.1 mouse_genomes_project 3 166989037 167031461 + Ptger3 protein_coding retained_intron MGP_C57BL6NJ_T0064933.1 MGP_C57BL6NJ_G0028425.1 mouse_genomes_project 3 166989037 167071616 + MGP_C57BL6NJ_P0064933 Ptger3 protein_coding protein_coding MGP_C57BL6NJ_T0064738.1 MGP_C57BL6NJ_G0028397.1 mouse_genomes_project 3 160694445 160714640 - MGP_C57BL6NJ_P0064738 Ifi44 protein_coding protein_coding MGP_C57BL6NJ_T0064739.1 MGP_C57BL6NJ_G0028397.1 mouse_genomes_project 3 160695949 160714562 - Ifi44 protein_coding processed_transcript MGP_C57BL6NJ_T0064740.1 MGP_C57BL6NJ_G0028397.1 mouse_genomes_project 3 160710372 160714627 - Ifi44 protein_coding retained_intron MGP_C57BL6NJ_T0064741.1 MGP_C57BL6NJ_G0028397.1 mouse_genomes_project 3 160710473 160714583 - Ifi44 protein_coding processed_transcript MGP_C57BL6NJ_T0014656.1 MGP_C57BL6NJ_G0012701.1 mouse_genomes_project 3 137520420 137520771 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060501.1 MGP_C57BL6NJ_G0027488.1 mouse_genomes_project 3 11816748 12077416 + MGP_C57BL6NJ_P0060501 Ralyl protein_coding protein_coding MGP_C57BL6NJ_T0060502.1 MGP_C57BL6NJ_G0027488.1 mouse_genomes_project 3 11816759 12078272 + MGP_C57BL6NJ_P0060502 Ralyl protein_coding protein_coding MGP_C57BL6NJ_T0060503.1 MGP_C57BL6NJ_G0027488.1 mouse_genomes_project 3 11816766 12078579 + MGP_C57BL6NJ_P0060503 Ralyl protein_coding protein_coding MGP_C57BL6NJ_T0010734.1 MGP_C57BL6NJ_G0008819.1 mouse_genomes_project 3 18546995 18547065 - Mir7007 miRNA miRNA MGP_C57BL6NJ_T0064914.1 MGP_C57BL6NJ_G0028422.1 mouse_genomes_project 3 164309362 164318562 + Lrriq3 protein_coding retained_intron MGP_C57BL6NJ_T0064915.1 MGP_C57BL6NJ_G0028422.1 mouse_genomes_project 3 164309362 164406279 + MGP_C57BL6NJ_P0064915 Lrriq3 protein_coding protein_coding MGP_C57BL6NJ_T0064916.1 MGP_C57BL6NJ_G0028422.1 mouse_genomes_project 3 164309466 164394227 + MGP_C57BL6NJ_P0064916 Lrriq3 protein_coding protein_coding MGP_C57BL6NJ_T0064917.1 MGP_C57BL6NJ_G0028422.1 mouse_genomes_project 3 164309516 164354856 + MGP_C57BL6NJ_P0064917 Lrriq3 protein_coding protein_coding MGP_C57BL6NJ_T0061702.1 MGP_C57BL6NJ_G0027736.1 mouse_genomes_project 3 82566339 82596504 - MGP_C57BL6NJ_P0061702 Tmem144 protein_coding protein_coding MGP_C57BL6NJ_T0061703.1 MGP_C57BL6NJ_G0027736.1 mouse_genomes_project 3 82566908 82595554 - MGP_C57BL6NJ_P0061703 Tmem144 protein_coding protein_coding MGP_C57BL6NJ_T0061704.1 MGP_C57BL6NJ_G0027736.1 mouse_genomes_project 3 82585814 82607579 - MGP_C57BL6NJ_P0061704 Tmem144 protein_coding protein_coding MGP_C57BL6NJ_T0061705.1 MGP_C57BL6NJ_G0027736.1 mouse_genomes_project 3 82592892 82607574 - MGP_C57BL6NJ_P0061705 Tmem144 protein_coding protein_coding MGP_C57BL6NJ_T0061706.1 MGP_C57BL6NJ_G0027736.1 mouse_genomes_project 3 82593021 82596737 - Tmem144 protein_coding processed_transcript MGP_C57BL6NJ_T0001410.1 MGP_C57BL6NJ_G0001311.1 mouse_genomes_project 3 109945733 109950236 - TEC TEC MGP_C57BL6NJ_T0062606.1 MGP_C57BL6NJ_G0027945.1 mouse_genomes_project 3 97055153 97056404 - MGP_C57BL6NJ_P0062606 Lce1m protein_coding protein_coding MGP_C57BL6NJ_T0062607.1 MGP_C57BL6NJ_G0027945.1 mouse_genomes_project 3 97055850 97056403 - MGP_C57BL6NJ_P0062607 Lce1m protein_coding protein_coding MGP_C57BL6NJ_T0099416.1 MGP_C57BL6NJ_G0037473.1 mouse_genomes_project 3 109356335 109357992 - Gm42701 sense_intronic sense_intronic MGP_C57BL6NJ_T0004356.1 MGP_C57BL6NJ_G0003832.1 mouse_genomes_project 3 27482919 27566288 - antisense antisense MGP_C57BL6NJ_T0004357.1 MGP_C57BL6NJ_G0003832.1 mouse_genomes_project 3 27520646 27524426 - antisense antisense MGP_C57BL6NJ_T0004483.1 MGP_C57BL6NJ_G0003921.1 mouse_genomes_project 3 112460139 112639368 - Gm27008 antisense antisense MGP_C57BL6NJ_T0004484.1 MGP_C57BL6NJ_G0003921.1 mouse_genomes_project 3 112476287 112643359 - Gm27008 antisense antisense MGP_C57BL6NJ_T0099435.1 MGP_C57BL6NJ_G0037492.1 mouse_genomes_project 3 111404585 111406108 - Gm42721 sense_intronic sense_intronic MGP_C57BL6NJ_T0014251.1 MGP_C57BL6NJ_G0012296.1 mouse_genomes_project 3 7923094 7923273 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014672.1 MGP_C57BL6NJ_G0012717.1 mouse_genomes_project 3 142661521 142662038 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014530.1 MGP_C57BL6NJ_G0012575.1 mouse_genomes_project 3 98617007 98617916 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007806.1 MGP_C57BL6NJ_G0006384.1 mouse_genomes_project 3 102575818 102617528 + Gm5544 lincRNA lincRNA MGP_C57BL6NJ_T0014470.1 MGP_C57BL6NJ_G0012515.1 mouse_genomes_project 3 76693493 76693959 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014301.1 MGP_C57BL6NJ_G0012346.1 mouse_genomes_project 3 25670816 25670927 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060552.1 MGP_C57BL6NJ_G0027503.1 mouse_genomes_project 3 16126554 16127104 + MGP_C57BL6NJ_P0060552 Cypt12 protein_coding protein_coding MGP_C57BL6NJ_T0101555.1 MGP_C57BL6NJ_G0039601.1 mouse_genomes_project 3 6116626 6116745 - Gm23670 snoRNA snoRNA MGP_C57BL6NJ_T0062900.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100054607 100060364 - MGP_C57BL6NJ_P0062900 Ecm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0062901.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100054611 100060371 - MGP_C57BL6NJ_P0062901 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062902.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100054612 100060369 - MGP_C57BL6NJ_P0062902 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062903.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100054613 100055483 - Ecm1 protein_coding retained_intron MGP_C57BL6NJ_T0062904.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100056601 100060351 - MGP_C57BL6NJ_P0062904 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062905.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100056613 100060369 - MGP_C57BL6NJ_P0062905 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062906.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100056674 100060371 - MGP_C57BL6NJ_P0062906 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062907.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100057064 100060346 - MGP_C57BL6NJ_P0062907 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062908.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100057562 100060351 - MGP_C57BL6NJ_P0062908 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0062909.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100058151 100059025 - Ecm1 protein_coding retained_intron MGP_C57BL6NJ_T0062910.1 MGP_C57BL6NJ_G0028011.1 mouse_genomes_project 3 100058685 100060371 - MGP_C57BL6NJ_P0062910 Ecm1 protein_coding protein_coding MGP_C57BL6NJ_T0001418.1 MGP_C57BL6NJ_G0001319.1 mouse_genomes_project 3 114193282 114195455 - TEC TEC MGP_C57BL6NJ_T0099436.1 MGP_C57BL6NJ_G0037493.1 mouse_genomes_project 3 126295745 126298984 - Gm42664 sense_intronic sense_intronic MGP_C57BL6NJ_T0060781.1 MGP_C57BL6NJ_G0027548.1 mouse_genomes_project 3 30019114 30079283 + MGP_C57BL6NJ_P0060781 Prkci protein_coding protein_coding MGP_C57BL6NJ_T0060782.1 MGP_C57BL6NJ_G0027548.1 mouse_genomes_project 3 30028560 30059138 + MGP_C57BL6NJ_P0060782 Prkci protein_coding protein_coding MGP_C57BL6NJ_T0060783.1 MGP_C57BL6NJ_G0027548.1 mouse_genomes_project 3 30056346 30065063 + Prkci protein_coding processed_transcript MGP_C57BL6NJ_T0060784.1 MGP_C57BL6NJ_G0027548.1 mouse_genomes_project 3 30064115 30066890 + MGP_C57BL6NJ_P0060784 Prkci protein_coding protein_coding MGP_C57BL6NJ_T0060785.1 MGP_C57BL6NJ_G0027548.1 mouse_genomes_project 3 30064180 30065635 + Prkci protein_coding retained_intron MGP_C57BL6NJ_T0064008.1 MGP_C57BL6NJ_G0028262.1 mouse_genomes_project 3 129839610 129871262 - MGP_C57BL6NJ_P0064008 Myoz2 protein_coding protein_coding MGP_C57BL6NJ_T0064009.1 MGP_C57BL6NJ_G0028262.1 mouse_genomes_project 3 129839921 129871091 - MGP_C57BL6NJ_P0064009 Myoz2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064010.1 MGP_C57BL6NJ_G0028262.1 mouse_genomes_project 3 129840006 129871251 - Myoz2 protein_coding processed_transcript MGP_C57BL6NJ_T0064011.1 MGP_C57BL6NJ_G0028262.1 mouse_genomes_project 3 129849585 129871210 - Myoz2 protein_coding processed_transcript MGP_C57BL6NJ_T0064012.1 MGP_C57BL6NJ_G0028262.1 mouse_genomes_project 3 129859382 129871199 - Myoz2 protein_coding retained_intron MGP_C57BL6NJ_T0063542.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113048900 113098982 - MGP_C57BL6NJ_P0063542 Slc6a17 protein_coding protein_coding MGP_C57BL6NJ_T0063543.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113048905 113098982 - MGP_C57BL6NJ_P0063543 Slc6a17 protein_coding protein_coding MGP_C57BL6NJ_T0063544.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113048906 113081494 - MGP_C57BL6NJ_P0063544 Slc6a17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063545.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113048908 113050063 - Slc6a17 protein_coding processed_transcript MGP_C57BL6NJ_T0063546.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113063049 113098713 - Slc6a17 protein_coding processed_transcript MGP_C57BL6NJ_T0063547.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113070734 113074160 - Slc6a17 protein_coding processed_transcript MGP_C57BL6NJ_T0063548.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113070736 113098982 - Slc6a17 protein_coding retained_intron MGP_C57BL6NJ_T0063549.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113076678 113098909 - Slc6a17 protein_coding processed_transcript MGP_C57BL6NJ_T0063550.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113076724 113098301 - MGP_C57BL6NJ_P0063550 Slc6a17 protein_coding protein_coding MGP_C57BL6NJ_T0063551.1 MGP_C57BL6NJ_G0028165.1 mouse_genomes_project 3 113081634 113098291 - Slc6a17 protein_coding processed_transcript MGP_C57BL6NJ_T0010773.1 MGP_C57BL6NJ_G0008858.1 mouse_genomes_project 3 100055375 100055438 - Mir7014 miRNA miRNA MGP_C57BL6NJ_T0001276.1 MGP_C57BL6NJ_G0001179.1 mouse_genomes_project 3 33911763 33914596 + TEC TEC MGP_C57BL6NJ_T0007825.1 MGP_C57BL6NJ_G0006401.1 mouse_genomes_project 3 111202963 111204780 + Gm5547 lincRNA lincRNA MGP_C57BL6NJ_T0007826.1 MGP_C57BL6NJ_G0006401.1 mouse_genomes_project 3 111202990 111204773 + Gm5547 lincRNA lincRNA MGP_C57BL6NJ_T0007827.1 MGP_C57BL6NJ_G0006401.1 mouse_genomes_project 3 111204036 111204781 + Gm5547 lincRNA lincRNA MGP_C57BL6NJ_T0001503.1 MGP_C57BL6NJ_G0001403.1 mouse_genomes_project 3 146953260 146955030 - TEC TEC MGP_C57BL6NJ_T0060481.1 MGP_C57BL6NJ_G0027482.1 mouse_genomes_project 3 7926002 7945507 - MGP_C57BL6NJ_P0060481 Impa1 protein_coding protein_coding MGP_C57BL6NJ_T0060482.1 MGP_C57BL6NJ_G0027482.1 mouse_genomes_project 3 7927994 7945422 - MGP_C57BL6NJ_P0060482 Impa1 protein_coding protein_coding MGP_C57BL6NJ_T0060483.1 MGP_C57BL6NJ_G0027482.1 mouse_genomes_project 3 7928000 7945507 - MGP_C57BL6NJ_P0060483 Impa1 protein_coding protein_coding MGP_C57BL6NJ_T0060484.1 MGP_C57BL6NJ_G0027482.1 mouse_genomes_project 3 7929164 7930699 - Impa1 protein_coding retained_intron MGP_C57BL6NJ_T0060486.1 MGP_C57BL6NJ_G0027482.1 mouse_genomes_project 3 7940249 7945200 - MGP_C57BL6NJ_P0060486 Impa1 protein_coding protein_coding MGP_C57BL6NJ_T0001392.1 MGP_C57BL6NJ_G0001293.1 mouse_genomes_project 3 94046954 94049511 + TEC TEC MGP_C57BL6NJ_T0018436.1 MGP_C57BL6NJ_G0015904.1 mouse_genomes_project 3 99264643 99266095 + 4930481B07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018437.1 MGP_C57BL6NJ_G0015904.1 mouse_genomes_project 3 99265267 99269157 + 4930481B07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0001460.1 MGP_C57BL6NJ_G0001361.1 mouse_genomes_project 3 134100976 134102588 - TEC TEC MGP_C57BL6NJ_T0063235.1 MGP_C57BL6NJ_G0028095.1 mouse_genomes_project 3 107108480 107174929 + MGP_C57BL6NJ_P0063235 Casq2 protein_coding protein_coding MGP_C57BL6NJ_T0063236.1 MGP_C57BL6NJ_G0028095.1 mouse_genomes_project 3 107108611 107174929 + MGP_C57BL6NJ_P0063236 Casq2 protein_coding protein_coding MGP_C57BL6NJ_T0063237.1 MGP_C57BL6NJ_G0028095.1 mouse_genomes_project 3 107108704 107173746 + MGP_C57BL6NJ_P0063237 Casq2 protein_coding protein_coding MGP_C57BL6NJ_T0063238.1 MGP_C57BL6NJ_G0028095.1 mouse_genomes_project 3 107154369 107173763 + Casq2 protein_coding processed_transcript MGP_C57BL6NJ_T0063239.1 MGP_C57BL6NJ_G0028095.1 mouse_genomes_project 3 107172465 107174000 + Casq2 protein_coding retained_intron MGP_C57BL6NJ_T0007642.1 MGP_C57BL6NJ_G0006260.1 mouse_genomes_project 3 18190956 18192033 + 4632415L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0007643.1 MGP_C57BL6NJ_G0006260.1 mouse_genomes_project 3 18190968 18196858 + 4632415L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0099408.1 MGP_C57BL6NJ_G0037465.1 mouse_genomes_project 3 108964909 108965975 - Gm43387 sense_intronic sense_intronic MGP_C57BL6NJ_T0007841.1 MGP_C57BL6NJ_G0006413.1 mouse_genomes_project 3 122372715 122390169 + Gm26544 lincRNA lincRNA MGP_C57BL6NJ_T0099388.1 MGP_C57BL6NJ_G0037445.1 mouse_genomes_project 3 102955405 102958465 + Gm43189 sense_intronic sense_intronic MGP_C57BL6NJ_T0101629.1 MGP_C57BL6NJ_G0039675.1 mouse_genomes_project 3 163021902 163021982 - Snord45c snoRNA snoRNA MGP_C57BL6NJ_T0063500.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041254 112069769 + MGP_C57BL6NJ_P0063500 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063501.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041283 112059881 + Dram2 protein_coding retained_intron MGP_C57BL6NJ_T0063502.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041287 112048749 + MGP_C57BL6NJ_P0063502 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063503.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041320 112068304 + MGP_C57BL6NJ_P0063503 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063504.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041326 112059722 + Dram2 protein_coding retained_intron MGP_C57BL6NJ_T0063505.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041328 112068304 + MGP_C57BL6NJ_P0063505 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063506.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041333 112048717 + MGP_C57BL6NJ_P0063506 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063507.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041333 112064281 + MGP_C57BL6NJ_P0063507 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0063508.1 MGP_C57BL6NJ_G0028151.1 mouse_genomes_project 3 112041337 112064218 + MGP_C57BL6NJ_P0063508 Dram2 protein_coding protein_coding MGP_C57BL6NJ_T0099387.1 MGP_C57BL6NJ_G0037444.1 mouse_genomes_project 3 98750231 98751489 - Gm43768 sense_intronic sense_intronic MGP_C57BL6NJ_T0007913.1 MGP_C57BL6NJ_G0006473.1 mouse_genomes_project 3 151912768 151914237 - Gm43616 lincRNA lincRNA MGP_C57BL6NJ_T0061526.1 MGP_C57BL6NJ_G0027694.1 mouse_genomes_project 3 67640750 67883314 - MGP_C57BL6NJ_P0061526 Veph1 protein_coding protein_coding MGP_C57BL6NJ_T0061527.1 MGP_C57BL6NJ_G0027694.1 mouse_genomes_project 3 67646990 67722143 - Veph1 protein_coding processed_transcript MGP_C57BL6NJ_T0061530.1 MGP_C57BL6NJ_G0027694.1 mouse_genomes_project 3 67832721 67883225 - Veph1 protein_coding retained_intron MGP_C57BL6NJ_T0014237.1 MGP_C57BL6NJ_G0012282.1 mouse_genomes_project 3 4826451 4827467 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064640.1 MGP_C57BL6NJ_G0028379.1 mouse_genomes_project 3 154501399 154534921 + MGP_C57BL6NJ_P0064640 Syde2 protein_coding protein_coding MGP_C57BL6NJ_T0064641.1 MGP_C57BL6NJ_G0028379.1 mouse_genomes_project 3 154502182 154534921 + MGP_C57BL6NJ_P0064641 Syde2 protein_coding protein_coding MGP_C57BL6NJ_T0064642.1 MGP_C57BL6NJ_G0028379.1 mouse_genomes_project 3 154502332 154533507 + MGP_C57BL6NJ_P0064642 Syde2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0064643.1 MGP_C57BL6NJ_G0028379.1 mouse_genomes_project 3 154507174 154511921 + Syde2 protein_coding processed_transcript MGP_C57BL6NJ_T0101594.1 MGP_C57BL6NJ_G0039640.1 mouse_genomes_project 3 93658221 93658357 - Gm24608 snoRNA snoRNA MGP_C57BL6NJ_T0062595.1 MGP_C57BL6NJ_G0027935.1 mouse_genomes_project 3 96820672 96822273 - MGP_C57BL6NJ_P0062595 Lce1k protein_coding protein_coding MGP_C57BL6NJ_T0014265.1 MGP_C57BL6NJ_G0012310.1 mouse_genomes_project 3 12293609 12294088 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001458.1 MGP_C57BL6NJ_G0001359.1 mouse_genomes_project 3 133857544 133859380 + TEC TEC MGP_C57BL6NJ_T0014617.1 MGP_C57BL6NJ_G0012662.1 mouse_genomes_project 3 122145859 122147024 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010750.1 MGP_C57BL6NJ_G0008835.1 mouse_genomes_project 3 51754721 51754787 + Gm24282 miRNA miRNA MGP_C57BL6NJ_T0063446.1 MGP_C57BL6NJ_G0028136.1 mouse_genomes_project 3 111103565 111188766 - MGP_C57BL6NJ_P0063446 Rap1a protein_coding protein_coding MGP_C57BL6NJ_T0063447.1 MGP_C57BL6NJ_G0028136.1 mouse_genomes_project 3 111114194 111188740 - MGP_C57BL6NJ_P0063447 Rap1a protein_coding protein_coding MGP_C57BL6NJ_T0001268.1 MGP_C57BL6NJ_G0001171.1 mouse_genomes_project 3 31851155 31851468 - TEC TEC MGP_C57BL6NJ_T0007756.1 MGP_C57BL6NJ_G0006347.1 mouse_genomes_project 3 82824496 83006884 + A330069K06Rik lincRNA lincRNA MGP_C57BL6NJ_T0001316.1 MGP_C57BL6NJ_G0001219.1 mouse_genomes_project 3 51734404 51736029 + TEC TEC MGP_C57BL6NJ_T0063640.1 MGP_C57BL6NJ_G0028189.1 mouse_genomes_project 3 113926559 114009119 + MGP_C57BL6NJ_P0063640 Sort1 protein_coding protein_coding MGP_C57BL6NJ_T0063641.1 MGP_C57BL6NJ_G0028189.1 mouse_genomes_project 3 113926568 114009187 + MGP_C57BL6NJ_P0063641 Sort1 protein_coding protein_coding MGP_C57BL6NJ_T0063642.1 MGP_C57BL6NJ_G0028189.1 mouse_genomes_project 3 114003142 114009114 + Sort1 protein_coding retained_intron MGP_C57BL6NJ_T0061227.1 MGP_C57BL6NJ_G0027627.1 mouse_genomes_project 3 54506582 54506809 + MGP_C57BL6NJ_P0061227 Gm10985 protein_coding protein_coding MGP_C57BL6NJ_T0063217.1 MGP_C57BL6NJ_G0028090.1 mouse_genomes_project 3 106319422 106321880 + Igsf3 protein_coding retained_intron MGP_C57BL6NJ_T0063218.1 MGP_C57BL6NJ_G0028090.1 mouse_genomes_project 3 106319422 106411033 + MGP_C57BL6NJ_P0063218 Igsf3 protein_coding protein_coding MGP_C57BL6NJ_T0063219.1 MGP_C57BL6NJ_G0028090.1 mouse_genomes_project 3 106320677 106408138 + MGP_C57BL6NJ_P0063219 Igsf3 protein_coding protein_coding MGP_C57BL6NJ_T0062457.1 MGP_C57BL6NJ_G0027877.1 mouse_genomes_project 3 93937947 93943960 - MGP_C57BL6NJ_P0062457 Creb3l4 protein_coding protein_coding MGP_C57BL6NJ_T0062458.1 MGP_C57BL6NJ_G0027877.1 mouse_genomes_project 3 93938017 93943591 - MGP_C57BL6NJ_P0062458 Creb3l4 protein_coding protein_coding MGP_C57BL6NJ_T0063013.1 MGP_C57BL6NJ_G0028035.1 mouse_genomes_project 3 100860945 100869305 - MGP_C57BL6NJ_P0063013 BC107364 protein_coding protein_coding MGP_C57BL6NJ_T0063014.1 MGP_C57BL6NJ_G0028035.1 mouse_genomes_project 3 100860945 100869305 - MGP_C57BL6NJ_P0063014 BC107364 protein_coding protein_coding MGP_C57BL6NJ_T0001298.1 MGP_C57BL6NJ_G0001201.1 mouse_genomes_project 3 41830811 41835277 + TEC TEC MGP_C57BL6NJ_T0014321.1 MGP_C57BL6NJ_G0012366.1 mouse_genomes_project 3 35366177 35366498 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061035.1 MGP_C57BL6NJ_G0027592.1 mouse_genomes_project 3 37222476 37228792 - protein_coding processed_transcript MGP_C57BL6NJ_T0099091.1 MGP_C57BL6NJ_G0037155.1 mouse_genomes_project 3 39235877 39235996 - n-R5s195 rRNA rRNA MGP_C57BL6NJ_T0099094.1 MGP_C57BL6NJ_G0037158.1 mouse_genomes_project 3 92430762 92430881 + n-R5s197 rRNA rRNA MGP_C57BL6NJ_T0007644.1 MGP_C57BL6NJ_G0006261.1 mouse_genomes_project 3 18640581 18642409 + Gm43525 lincRNA lincRNA MGP_C57BL6NJ_T0101591.1 MGP_C57BL6NJ_G0039637.1 mouse_genomes_project 3 90914236 90914356 - Gm25167 snoRNA snoRNA MGP_C57BL6NJ_T0004351.1 MGP_C57BL6NJ_G0003828.1 mouse_genomes_project 3 4985474 5068936 + Gm16685 antisense antisense MGP_C57BL6NJ_T0001520.1 MGP_C57BL6NJ_G0001420.1 mouse_genomes_project 3 162375819 162379195 - TEC TEC MGP_C57BL6NJ_T0004559.1 MGP_C57BL6NJ_G0003970.1 mouse_genomes_project 3 161694375 161708895 + AI115009 antisense antisense MGP_C57BL6NJ_T0014419.1 MGP_C57BL6NJ_G0012464.1 mouse_genomes_project 3 64043475 64044057 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063892.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126270838 126335819 - MGP_C57BL6NJ_P0063892 Ptbp2 protein_coding protein_coding MGP_C57BL6NJ_T0063893.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126270838 126335403 - MGP_C57BL6NJ_P0063893 Ptbp2 protein_coding protein_coding MGP_C57BL6NJ_T0063894.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126272416 126335249 - MGP_C57BL6NJ_P0063894 Ptbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063895.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126272441 126278237 - MGP_C57BL6NJ_P0063895 Ptbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063896.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126272480 126293417 - Ptbp2 protein_coding retained_intron MGP_C57BL6NJ_T0063897.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126272905 126276484 - Ptbp2 protein_coding retained_intron MGP_C57BL6NJ_T0063898.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126276203 126293048 - MGP_C57BL6NJ_P0063898 Ptbp2 protein_coding protein_coding MGP_C57BL6NJ_T0063899.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126291259 126295306 - Ptbp2 protein_coding retained_intron MGP_C57BL6NJ_T0063900.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126299172 126335301 - MGP_C57BL6NJ_P0063900 Ptbp2 protein_coding protein_coding MGP_C57BL6NJ_T0063901.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126300448 126336479 - Ptbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0063902.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126312768 126336481 - Ptbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0063903.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126312773 126335706 - Ptbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0063904.1 MGP_C57BL6NJ_G0028242.1 mouse_genomes_project 3 126312775 126335322 - MGP_C57BL6NJ_P0063904 Ptbp2 protein_coding protein_coding MGP_C57BL6NJ_T0014389.1 MGP_C57BL6NJ_G0012434.1 mouse_genomes_project 3 55362366 55364054 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014291.1 MGP_C57BL6NJ_G0012336.1 mouse_genomes_project 3 19408247 19409188 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001537.1 MGP_C57BL6NJ_G0001437.1 mouse_genomes_project 3 167682170 167683884 + TEC TEC MGP_C57BL6NJ_T0103091.1 MGP_C57BL6NJ_G0040885.1 mouse_genomes_project 3 97821816 97822198 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0061577.1 MGP_C57BL6NJ_G0027707.1 mouse_genomes_project 3 70626213 70628563 - MGP_C57BL6NJ_P0061577 Gm17641 protein_coding protein_coding MGP_C57BL6NJ_T0061414.1 MGP_C57BL6NJ_G0027669.1 mouse_genomes_project 3 60999213 61010651 + MGP_C57BL6NJ_P0061414 C130079G13Rik protein_coding protein_coding MGP_C57BL6NJ_T0014319.1 MGP_C57BL6NJ_G0012364.1 mouse_genomes_project 3 34906186 34906622 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062600.1 MGP_C57BL6NJ_G0027940.1 mouse_genomes_project 3 96951698 96952817 + MGP_C57BL6NJ_P0062600 Lce3b protein_coding protein_coding MGP_C57BL6NJ_T0064657.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941001 154979750 + MGP_C57BL6NJ_P0064657 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064658.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941001 154979388 + MGP_C57BL6NJ_P0064658 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064659.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941023 154979739 + MGP_C57BL6NJ_P0064659 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064660.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941045 154978512 + MGP_C57BL6NJ_P0064660 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064661.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941050 154956650 + MGP_C57BL6NJ_P0064661 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064662.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154941337 154957610 + MGP_C57BL6NJ_P0064662 Ssx2ip protein_coding protein_coding MGP_C57BL6NJ_T0064663.1 MGP_C57BL6NJ_G0028384.1 mouse_genomes_project 3 154970106 154972185 + Ssx2ip protein_coding retained_intron MGP_C57BL6NJ_T0061558.1 MGP_C57BL6NJ_G0027702.1 mouse_genomes_project 3 69241632 69268017 + MGP_C57BL6NJ_P0061558 Mfsd1 protein_coding protein_coding MGP_C57BL6NJ_T0061559.1 MGP_C57BL6NJ_G0027702.1 mouse_genomes_project 3 69243637 69259988 + Mfsd1 protein_coding processed_transcript MGP_C57BL6NJ_T0007621.1 MGP_C57BL6NJ_G0006248.1 mouse_genomes_project 3 7322674 7354578 + Gm16337 lincRNA lincRNA MGP_C57BL6NJ_T0062590.1 MGP_C57BL6NJ_G0027931.1 mouse_genomes_project 3 96720928 96723390 - MGP_C57BL6NJ_P0062590 Lce1f protein_coding protein_coding MGP_C57BL6NJ_T0014522.1 MGP_C57BL6NJ_G0012567.1 mouse_genomes_project 3 97207116 97207807 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062037.1 MGP_C57BL6NJ_G0027813.1 mouse_genomes_project 3 91809204 91824765 - MGP_C57BL6NJ_P0062037 Bglap2 protein_coding protein_coding MGP_C57BL6NJ_T0007794.1 MGP_C57BL6NJ_G0006372.1 mouse_genomes_project 3 97366460 97530331 - lincRNA lincRNA MGP_C57BL6NJ_T0014603.1 MGP_C57BL6NJ_G0012648.1 mouse_genomes_project 3 118208784 118209571 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007937.1 MGP_C57BL6NJ_G0006493.1 mouse_genomes_project 3 158040822 158210529 - Gm30382 lincRNA lincRNA MGP_C57BL6NJ_T0007938.1 MGP_C57BL6NJ_G0006493.1 mouse_genomes_project 3 158041280 158088266 - Gm30382 lincRNA lincRNA MGP_C57BL6NJ_T0007940.1 MGP_C57BL6NJ_G0006493.1 mouse_genomes_project 3 158072442 158210554 - Gm30382 lincRNA lincRNA MGP_C57BL6NJ_T0007648.1 MGP_C57BL6NJ_G0006265.1 mouse_genomes_project 3 20466703 20468434 - Gm43672 lincRNA lincRNA MGP_C57BL6NJ_T0060485.1 MGP_C57BL6NJ_G0027483.1 mouse_genomes_project 3 7935758 7949774 - MGP_C57BL6NJ_P0060485 Gm38303 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062817.1 MGP_C57BL6NJ_G0027995.1 mouse_genomes_project 3 99502595 99510284 + MGP_C57BL6NJ_P0062817 Cdc42se1 protein_coding protein_coding MGP_C57BL6NJ_T0062818.1 MGP_C57BL6NJ_G0027995.1 mouse_genomes_project 3 99502673 99506256 + Cdc42se1 protein_coding retained_intron MGP_C57BL6NJ_T0062819.1 MGP_C57BL6NJ_G0027995.1 mouse_genomes_project 3 99502815 99508457 + MGP_C57BL6NJ_P0062819 Cdc42se1 protein_coding protein_coding MGP_C57BL6NJ_T0062821.1 MGP_C57BL6NJ_G0027995.1 mouse_genomes_project 3 99506161 99508415 + MGP_C57BL6NJ_P0062821 Cdc42se1 protein_coding protein_coding MGP_C57BL6NJ_T0062822.1 MGP_C57BL6NJ_G0027995.1 mouse_genomes_project 3 99506167 99508537 + MGP_C57BL6NJ_P0062822 Cdc42se1 protein_coding protein_coding MGP_C57BL6NJ_T0018423.1 MGP_C57BL6NJ_G0015899.1 mouse_genomes_project 3 84818065 84824863 - Gm9989 processed_transcript lincRNA MGP_C57BL6NJ_T0018424.1 MGP_C57BL6NJ_G0015899.1 mouse_genomes_project 3 84821732 84824928 - Gm9989 processed_transcript retained_intron MGP_C57BL6NJ_T0014620.1 MGP_C57BL6NJ_G0012665.1 mouse_genomes_project 3 123131671 123132050 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102247.1 MGP_C57BL6NJ_G0040239.1 mouse_genomes_project 3 136149799 136150485 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0061413.1 MGP_C57BL6NJ_G0027668.1 mouse_genomes_project 3 60901084 60917405 + protein_coding unprocessed_pseudogene MGP_C57BL6NJ_T0014568.1 MGP_C57BL6NJ_G0012613.1 mouse_genomes_project 3 107757004 107757801 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061882.1 MGP_C57BL6NJ_G0027782.1 mouse_genomes_project 3 90764721 90798458 + MGP_C57BL6NJ_P0061882 Fcrl5 protein_coding protein_coding MGP_C57BL6NJ_T0061883.1 MGP_C57BL6NJ_G0027782.1 mouse_genomes_project 3 90764761 90831801 + MGP_C57BL6NJ_P0061883 Fcrl5 protein_coding protein_coding MGP_C57BL6NJ_T0061884.1 MGP_C57BL6NJ_G0027782.1 mouse_genomes_project 3 90764833 90787828 + MGP_C57BL6NJ_P0061884 Fcrl5 protein_coding protein_coding MGP_C57BL6NJ_T0061885.1 MGP_C57BL6NJ_G0027782.1 mouse_genomes_project 3 90764833 90787828 + MGP_C57BL6NJ_P0061885 Fcrl5 protein_coding protein_coding MGP_C57BL6NJ_T0061886.1 MGP_C57BL6NJ_G0027782.1 mouse_genomes_project 3 90764833 90787828 + MGP_C57BL6NJ_P0061886 Fcrl5 protein_coding protein_coding MGP_C57BL6NJ_T0101559.1 MGP_C57BL6NJ_G0039605.1 mouse_genomes_project 3 20806088 20806217 - Gm26354 snoRNA snoRNA MGP_C57BL6NJ_T0004404.1 MGP_C57BL6NJ_G0003867.1 mouse_genomes_project 3 63609584 63612593 - 9330121J05Rik antisense antisense MGP_C57BL6NJ_T0001449.1 MGP_C57BL6NJ_G0001350.1 mouse_genomes_project 3 131318630 131319577 - TEC TEC MGP_C57BL6NJ_T0064368.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143323707 143441257 - MGP_C57BL6NJ_P0064368 Nfkb1 protein_coding protein_coding MGP_C57BL6NJ_T0064369.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143323709 143352540 - MGP_C57BL6NJ_P0064369 Nfkb1 protein_coding protein_coding MGP_C57BL6NJ_T0064370.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143323797 143348066 - MGP_C57BL6NJ_P0064370 Nfkb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064371.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143323934 143352753 - Nfkb1 protein_coding retained_intron MGP_C57BL6NJ_T0064372.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143324330 143416582 - MGP_C57BL6NJ_P0064372 Nfkb1 protein_coding protein_coding MGP_C57BL6NJ_T0064373.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143324333 143418122 - MGP_C57BL6NJ_P0064373 Nfkb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064374.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143331948 143335610 - Nfkb1 protein_coding processed_transcript MGP_C57BL6NJ_T0064375.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143346128 143348129 - Nfkb1 protein_coding retained_intron MGP_C57BL6NJ_T0064376.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143354859 143441258 - Nfkb1 protein_coding retained_intron MGP_C57BL6NJ_T0064377.1 MGP_C57BL6NJ_G0028323.1 mouse_genomes_project 3 143362263 143366286 - Nfkb1 protein_coding retained_intron MGP_C57BL6NJ_T0099426.1 MGP_C57BL6NJ_G0037483.1 mouse_genomes_project 3 109923175 109924568 + Gm43585 sense_intronic sense_intronic MGP_C57BL6NJ_T0004485.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113491612 113499832 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004486.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113493651 113499385 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004487.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113495089 113499417 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004488.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113496482 113499311 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004489.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113496513 113499392 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004490.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113496742 113499428 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004491.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113496841 113499393 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004492.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113496885 113499402 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004493.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113497037 113499408 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004494.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113497091 113499419 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004495.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113497121 113499382 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0004496.1 MGP_C57BL6NJ_G0003922.1 mouse_genomes_project 3 113497747 113499431 - 4933431E20Rik antisense antisense MGP_C57BL6NJ_T0100288.1 MGP_C57BL6NJ_G0038334.1 mouse_genomes_project 3 99356806 99356913 + Gm22301 snRNA snRNA MGP_C57BL6NJ_T0014622.1 MGP_C57BL6NJ_G0012667.1 mouse_genomes_project 3 123424072 123424751 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063010.1 MGP_C57BL6NJ_G0028033.1 mouse_genomes_project 3 100643431 100643812 + MGP_C57BL6NJ_P0063010 Hist2h2bb protein_coding protein_coding MGP_C57BL6NJ_T0001359.1 MGP_C57BL6NJ_G0001260.1 mouse_genomes_project 3 60289480 60291003 + TEC TEC MGP_C57BL6NJ_T0004445.1 MGP_C57BL6NJ_G0003897.1 mouse_genomes_project 3 99247831 99253464 - Gm15265 antisense antisense MGP_C57BL6NJ_T0004446.1 MGP_C57BL6NJ_G0003897.1 mouse_genomes_project 3 99247865 99253887 - Gm15265 antisense antisense MGP_C57BL6NJ_T0010791.1 MGP_C57BL6NJ_G0008876.1 mouse_genomes_project 3 134727969 134728035 + Mir302d miRNA miRNA MGP_C57BL6NJ_T0014580.1 MGP_C57BL6NJ_G0012625.1 mouse_genomes_project 3 111435128 111435557 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007869.1 MGP_C57BL6NJ_G0006434.1 mouse_genomes_project 3 135998459 136000477 - 4933424H11Rik lincRNA lincRNA MGP_C57BL6NJ_T0060999.1 MGP_C57BL6NJ_G0027585.1 mouse_genomes_project 3 36703144 36714192 - MGP_C57BL6NJ_P0060999 Il21 protein_coding protein_coding MGP_C57BL6NJ_T0061000.1 MGP_C57BL6NJ_G0027585.1 mouse_genomes_project 3 36706910 36714139 - MGP_C57BL6NJ_P0061000 Il21 protein_coding protein_coding MGP_C57BL6NJ_T0061001.1 MGP_C57BL6NJ_G0027585.1 mouse_genomes_project 3 36711875 36714210 - Il21 protein_coding retained_intron MGP_C57BL6NJ_T0007920.1 MGP_C57BL6NJ_G0006479.1 mouse_genomes_project 3 152119471 152121381 + Gm42706 lincRNA lincRNA MGP_C57BL6NJ_T0014709.1 MGP_C57BL6NJ_G0012754.1 mouse_genomes_project 3 153207414 153209089 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014255.1 MGP_C57BL6NJ_G0012300.1 mouse_genomes_project 3 9392764 9393778 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103124.1 MGP_C57BL6NJ_G0040918.1 mouse_genomes_project 3 150929690 150940809 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014262.1 MGP_C57BL6NJ_G0012307.1 mouse_genomes_project 3 11640033 11640288 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007773.1 MGP_C57BL6NJ_G0006363.1 mouse_genomes_project 3 90459334 90464097 + Gm37855 lincRNA lincRNA MGP_C57BL6NJ_T0010796.1 MGP_C57BL6NJ_G0008881.1 mouse_genomes_project 3 142850717 142850823 + Gm24048 miRNA miRNA MGP_C57BL6NJ_T0061502.1 MGP_C57BL6NJ_G0027691.1 mouse_genomes_project 3 67083488 67110601 + MGP_C57BL6NJ_P0061502 Tiparp protein_coding protein_coding MGP_C57BL6NJ_T0061503.1 MGP_C57BL6NJ_G0027691.1 mouse_genomes_project 3 67083538 67102676 + MGP_C57BL6NJ_P0061503 Tiparp protein_coding protein_coding MGP_C57BL6NJ_T0061504.1 MGP_C57BL6NJ_G0027691.1 mouse_genomes_project 3 67101118 67107715 + Tiparp protein_coding processed_transcript MGP_C57BL6NJ_T0060715.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 27946784 28028642 + MGP_C57BL6NJ_P0060715 Egfem1 protein_coding protein_coding MGP_C57BL6NJ_T0060716.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 27947061 28504260 + MGP_C57BL6NJ_P0060716 Egfem1 protein_coding protein_coding MGP_C57BL6NJ_T0060717.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 27947339 28599207 + Egfem1 protein_coding retained_intron MGP_C57BL6NJ_T0060718.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 27947495 28619508 + MGP_C57BL6NJ_P0060718 Egfem1 protein_coding protein_coding MGP_C57BL6NJ_T0060719.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 27947533 28618809 + MGP_C57BL6NJ_P0060719 Egfem1 protein_coding protein_coding MGP_C57BL6NJ_T0060720.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 28352924 28572237 + Egfem1 protein_coding processed_transcript MGP_C57BL6NJ_T0060721.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 28428133 28619347 + MGP_C57BL6NJ_P0060721 Egfem1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060722.1 MGP_C57BL6NJ_G0027537.1 mouse_genomes_project 3 28428158 28598314 + MGP_C57BL6NJ_P0060722 Egfem1 protein_coding protein_coding MGP_C57BL6NJ_T0061002.1 MGP_C57BL6NJ_G0027586.1 mouse_genomes_project 3 36793035 36797745 - MGP_C57BL6NJ_P0061002 Cetn4 protein_coding protein_coding MGP_C57BL6NJ_T0061003.1 MGP_C57BL6NJ_G0027586.1 mouse_genomes_project 3 36794058 36797719 - MGP_C57BL6NJ_P0061003 Cetn4 protein_coding protein_coding MGP_C57BL6NJ_T0061004.1 MGP_C57BL6NJ_G0027586.1 mouse_genomes_project 3 36794390 36797658 - MGP_C57BL6NJ_P0061004 Cetn4 protein_coding protein_coding MGP_C57BL6NJ_T0014377.1 MGP_C57BL6NJ_G0012422.1 mouse_genomes_project 3 51842612 51842997 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062661.1 MGP_C57BL6NJ_G0027970.1 mouse_genomes_project 3 98607190 98610700 + Mrpl9 protein_coding retained_intron MGP_C57BL6NJ_T0062662.1 MGP_C57BL6NJ_G0027970.1 mouse_genomes_project 3 98607197 98612567 + MGP_C57BL6NJ_P0062662 Mrpl9 protein_coding protein_coding MGP_C57BL6NJ_T0062663.1 MGP_C57BL6NJ_G0027970.1 mouse_genomes_project 3 98607209 98614989 + MGP_C57BL6NJ_P0062663 Mrpl9 protein_coding protein_coding MGP_C57BL6NJ_T0014225.1 MGP_C57BL6NJ_G0012270.1 mouse_genomes_project 3 1689196 1689432 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062574.1 MGP_C57BL6NJ_G0027917.1 mouse_genomes_project 3 96442280 96444365 - MGP_C57BL6NJ_P0062574 Sprr3 protein_coding protein_coding MGP_C57BL6NJ_T0004462.1 MGP_C57BL6NJ_G0003907.1 mouse_genomes_project 3 101521971 101621544 - antisense antisense MGP_C57BL6NJ_T0062877.1 MGP_C57BL6NJ_G0028006.1 mouse_genomes_project 3 99864340 99892810 + MGP_C57BL6NJ_P0062877 Hormad1 protein_coding protein_coding MGP_C57BL6NJ_T0062878.1 MGP_C57BL6NJ_G0028006.1 mouse_genomes_project 3 99864341 99892746 + MGP_C57BL6NJ_P0062878 Hormad1 protein_coding protein_coding MGP_C57BL6NJ_T0062879.1 MGP_C57BL6NJ_G0028006.1 mouse_genomes_project 3 99864341 99891058 + MGP_C57BL6NJ_P0062879 Hormad1 protein_coding protein_coding MGP_C57BL6NJ_T0062880.1 MGP_C57BL6NJ_G0028006.1 mouse_genomes_project 3 99864341 99892741 + MGP_C57BL6NJ_P0062880 Hormad1 protein_coding protein_coding MGP_C57BL6NJ_T0014404.1 MGP_C57BL6NJ_G0012449.1 mouse_genomes_project 3 59623535 59627193 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100268.1 MGP_C57BL6NJ_G0038314.1 mouse_genomes_project 3 81894358 81894462 + Gm24150 snRNA snRNA MGP_C57BL6NJ_T0001408.1 MGP_C57BL6NJ_G0001309.1 mouse_genomes_project 3 102684597 102689718 + TEC TEC MGP_C57BL6NJ_T0001372.1 MGP_C57BL6NJ_G0001273.1 mouse_genomes_project 3 75303841 75305706 - TEC TEC MGP_C57BL6NJ_T0014723.1 MGP_C57BL6NJ_G0012768.1 mouse_genomes_project 3 161910122 161910289 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011806.1 MGP_C57BL6NJ_G0009891.1 mouse_genomes_project 3 92897869 92898121 + Gm22642 misc_RNA misc_RNA MGP_C57BL6NJ_T0007649.1 MGP_C57BL6NJ_G0006266.1 mouse_genomes_project 3 20681397 20693501 - Gm38324 lincRNA lincRNA MGP_C57BL6NJ_T0014612.1 MGP_C57BL6NJ_G0012657.1 mouse_genomes_project 3 120655666 120656018 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062584.1 MGP_C57BL6NJ_G0027925.1 mouse_genomes_project 3 96648027 96650049 - MGP_C57BL6NJ_P0062584 Lce1a1 protein_coding protein_coding MGP_C57BL6NJ_T0062636.1 MGP_C57BL6NJ_G0027963.1 mouse_genomes_project 3 98472477 98495933 + MGP_C57BL6NJ_P0062636 Them4 protein_coding protein_coding MGP_C57BL6NJ_T0062637.1 MGP_C57BL6NJ_G0027963.1 mouse_genomes_project 3 98472518 98480559 + Them4 protein_coding retained_intron MGP_C57BL6NJ_T0062638.1 MGP_C57BL6NJ_G0027963.1 mouse_genomes_project 3 98472524 98488423 + Them4 protein_coding retained_intron MGP_C57BL6NJ_T0063089.1 MGP_C57BL6NJ_G0028055.1 mouse_genomes_project 3 101382262 101395182 - MGP_C57BL6NJ_P0063089 Gja8 protein_coding protein_coding MGP_C57BL6NJ_T0014316.1 MGP_C57BL6NJ_G0012361.1 mouse_genomes_project 3 33224387 33224834 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099440.1 MGP_C57BL6NJ_G0037497.1 mouse_genomes_project 3 152924301 152925074 - Gm43560 sense_intronic sense_intronic MGP_C57BL6NJ_T0064132.1 MGP_C57BL6NJ_G0028280.1 mouse_genomes_project 3 134998574 135009115 + MGP_C57BL6NJ_P0064132 Tifa protein_coding protein_coding MGP_C57BL6NJ_T0064133.1 MGP_C57BL6NJ_G0028280.1 mouse_genomes_project 3 134998679 135043864 + Tifa protein_coding processed_transcript MGP_C57BL6NJ_T0064134.1 MGP_C57BL6NJ_G0028280.1 mouse_genomes_project 3 134998681 135008680 + MGP_C57BL6NJ_P0064134 Tifa protein_coding protein_coding MGP_C57BL6NJ_T0064135.1 MGP_C57BL6NJ_G0028280.1 mouse_genomes_project 3 134999416 135008680 + MGP_C57BL6NJ_P0064135 Tifa protein_coding protein_coding MGP_C57BL6NJ_T0064136.1 MGP_C57BL6NJ_G0028280.1 mouse_genomes_project 3 134999565 135009115 + MGP_C57BL6NJ_P0064136 Tifa protein_coding protein_coding MGP_C57BL6NJ_T0061771.1 MGP_C57BL6NJ_G0027754.1 mouse_genomes_project 3 86068493 86314024 + MGP_C57BL6NJ_P0061771 Dchs2 protein_coding protein_coding MGP_C57BL6NJ_T0014532.1 MGP_C57BL6NJ_G0012577.1 mouse_genomes_project 3 99051229 99052058 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001504.1 MGP_C57BL6NJ_G0001404.1 mouse_genomes_project 3 149908354 149910966 + TEC TEC MGP_C57BL6NJ_T0064423.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145826030 145879219 - MGP_C57BL6NJ_P0064423 Dapp1 protein_coding protein_coding MGP_C57BL6NJ_T0064424.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145826031 145879210 - MGP_C57BL6NJ_P0064424 Dapp1 protein_coding protein_coding MGP_C57BL6NJ_T0064425.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145827706 145852468 - Dapp1 protein_coding processed_transcript MGP_C57BL6NJ_T0064426.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145828009 145851314 - Dapp1 protein_coding processed_transcript MGP_C57BL6NJ_T0064427.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145828127 145879204 - Dapp1 protein_coding processed_transcript MGP_C57BL6NJ_T0064428.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145846349 145851314 - Dapp1 protein_coding processed_transcript MGP_C57BL6NJ_T0064429.1 MGP_C57BL6NJ_G0028334.1 mouse_genomes_project 3 145878378 145879210 - Dapp1 protein_coding retained_intron MGP_C57BL6NJ_T0014702.1 MGP_C57BL6NJ_G0012747.1 mouse_genomes_project 3 150809696 150810333 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007838.1 MGP_C57BL6NJ_G0006411.1 mouse_genomes_project 3 117745657 117971269 + lincRNA lincRNA MGP_C57BL6NJ_T0060507.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12461085 12500775 + MGP_C57BL6NJ_P0060507 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0060508.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12461120 12495600 + MGP_C57BL6NJ_P0060508 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0060509.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12461121 12493402 + MGP_C57BL6NJ_P0060509 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0060510.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12461176 12489462 + MGP_C57BL6NJ_P0060510 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0060511.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12461231 12478771 + MGP_C57BL6NJ_P0060511 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060512.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12475414 12493705 + MGP_C57BL6NJ_P0060512 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0060513.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12475490 12481771 + MGP_C57BL6NJ_P0060513 Lrrcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060514.1 MGP_C57BL6NJ_G0027490.1 mouse_genomes_project 3 12477677 12486624 + MGP_C57BL6NJ_P0060514 Lrrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0004349.1 MGP_C57BL6NJ_G0003827.1 mouse_genomes_project 3 2409448 2457050 - 2700069I18Rik antisense antisense MGP_C57BL6NJ_T0004350.1 MGP_C57BL6NJ_G0003827.1 mouse_genomes_project 3 2410842 2457068 - 2700069I18Rik antisense antisense MGP_C57BL6NJ_T0062554.1 MGP_C57BL6NJ_G0027900.1 mouse_genomes_project 3 94468374 94485071 + MGP_C57BL6NJ_P0062554 Pglyrp4 protein_coding protein_coding MGP_C57BL6NJ_T0062555.1 MGP_C57BL6NJ_G0027900.1 mouse_genomes_project 3 94468379 94484068 + MGP_C57BL6NJ_P0062555 Pglyrp4 protein_coding protein_coding MGP_C57BL6NJ_T0062556.1 MGP_C57BL6NJ_G0027900.1 mouse_genomes_project 3 94481699 94485069 + Pglyrp4 protein_coding processed_transcript MGP_C57BL6NJ_T0014593.1 MGP_C57BL6NJ_G0012638.1 mouse_genomes_project 3 114562192 114562380 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064522.1 MGP_C57BL6NJ_G0028354.1 mouse_genomes_project 3 150743919 150769810 + Gbp5 protein_coding processed_transcript MGP_C57BL6NJ_T0064523.1 MGP_C57BL6NJ_G0028354.1 mouse_genomes_project 3 150746875 150778033 + MGP_C57BL6NJ_P0064523 Gbp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064524.1 MGP_C57BL6NJ_G0028354.1 mouse_genomes_project 3 150746883 150777924 + MGP_C57BL6NJ_P0064524 Gbp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064525.1 MGP_C57BL6NJ_G0028354.1 mouse_genomes_project 3 150748887 150777056 + MGP_C57BL6NJ_P0064525 Gbp5 protein_coding protein_coding MGP_C57BL6NJ_T0064526.1 MGP_C57BL6NJ_G0028354.1 mouse_genomes_project 3 150761501 150766050 + Gbp5 protein_coding retained_intron MGP_C57BL6NJ_T0010741.1 MGP_C57BL6NJ_G0008826.1 mouse_genomes_project 3 30064631 30064694 + Mir7008 miRNA miRNA MGP_C57BL6NJ_T0007933.1 MGP_C57BL6NJ_G0006490.1 mouse_genomes_project 3 156035297 156039784 + Gm37041 lincRNA lincRNA MGP_C57BL6NJ_T0062608.1 MGP_C57BL6NJ_G0027946.1 mouse_genomes_project 3 97124779 97126326 + MGP_C57BL6NJ_P0062608 Gm4858 protein_coding protein_coding MGP_C57BL6NJ_T0062609.1 MGP_C57BL6NJ_G0027946.1 mouse_genomes_project 3 97124779 97125462 + MGP_C57BL6NJ_P0062609 Gm4858 protein_coding protein_coding MGP_C57BL6NJ_T0064981.1 MGP_C57BL6NJ_G0028431.1 mouse_genomes_project 3 169007407 169047147 + MGP_C57BL6NJ_P0064981 Depdc1a protein_coding protein_coding MGP_C57BL6NJ_T0064982.1 MGP_C57BL6NJ_G0028431.1 mouse_genomes_project 3 169007425 169046770 + MGP_C57BL6NJ_P0064982 Depdc1a protein_coding protein_coding MGP_C57BL6NJ_T0064983.1 MGP_C57BL6NJ_G0028431.1 mouse_genomes_project 3 169007432 169046653 + MGP_C57BL6NJ_P0064983 Depdc1a protein_coding protein_coding MGP_C57BL6NJ_T0061827.1 MGP_C57BL6NJ_G0027767.1 mouse_genomes_project 3 88759120 88844667 + MGP_C57BL6NJ_P0061827 Gatb protein_coding protein_coding MGP_C57BL6NJ_T0061828.1 MGP_C57BL6NJ_G0027767.1 mouse_genomes_project 3 88759120 88835624 + MGP_C57BL6NJ_P0061828 Gatb protein_coding protein_coding MGP_C57BL6NJ_T0061829.1 MGP_C57BL6NJ_G0027767.1 mouse_genomes_project 3 88759128 88841878 + MGP_C57BL6NJ_P0061829 Gatb protein_coding protein_coding MGP_C57BL6NJ_T0061830.1 MGP_C57BL6NJ_G0027767.1 mouse_genomes_project 3 88759133 88761043 + Gatb protein_coding processed_transcript MGP_C57BL6NJ_T0061831.1 MGP_C57BL6NJ_G0027767.1 mouse_genomes_project 3 88759196 88843203 + Gatb protein_coding processed_transcript MGP_C57BL6NJ_T0014453.1 MGP_C57BL6NJ_G0012498.1 mouse_genomes_project 3 71503198 71503595 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064177.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137217810 137238612 - Rrh protein_coding processed_transcript MGP_C57BL6NJ_T0064178.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137222021 137238624 - MGP_C57BL6NJ_P0064178 Rrh protein_coding protein_coding MGP_C57BL6NJ_T0064179.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137222024 137238610 - MGP_C57BL6NJ_P0064179 Rrh protein_coding protein_coding MGP_C57BL6NJ_T0064180.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137222250 137238706 - MGP_C57BL6NJ_P0064180 Rrh protein_coding protein_coding MGP_C57BL6NJ_T0064181.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137222358 137238581 - MGP_C57BL6NJ_P0064181 Rrh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064182.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137229931 137238613 - Rrh protein_coding processed_transcript MGP_C57BL6NJ_T0064183.1 MGP_C57BL6NJ_G0028288.1 mouse_genomes_project 3 137235584 137238577 - Rrh protein_coding retained_intron MGP_C57BL6NJ_T0061684.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82313662 82326839 + Ppid protein_coding retained_intron MGP_C57BL6NJ_T0061685.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82313685 82327213 + MGP_C57BL6NJ_P0061685 Ppid protein_coding protein_coding MGP_C57BL6NJ_T0061686.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82313808 82317629 + Ppid protein_coding processed_transcript MGP_C57BL6NJ_T0061687.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82316009 82320082 + MGP_C57BL6NJ_P0061687 Ppid protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061688.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82318477 82320509 + Ppid protein_coding retained_intron MGP_C57BL6NJ_T0061689.1 MGP_C57BL6NJ_G0027732.1 mouse_genomes_project 3 82321029 82325891 + Ppid protein_coding retained_intron MGP_C57BL6NJ_T0001518.1 MGP_C57BL6NJ_G0001418.1 mouse_genomes_project 3 161397011 161400090 - TEC TEC MGP_C57BL6NJ_T0061147.1 MGP_C57BL6NJ_G0027610.1 mouse_genomes_project 3 50308480 50887298 - MGP_C57BL6NJ_P0061147 Slc7a11 protein_coding protein_coding MGP_C57BL6NJ_T0061148.1 MGP_C57BL6NJ_G0027610.1 mouse_genomes_project 3 50803239 50887295 - MGP_C57BL6NJ_P0061148 Slc7a11 protein_coding protein_coding MGP_C57BL6NJ_T0061149.1 MGP_C57BL6NJ_G0027610.1 mouse_genomes_project 3 50808150 50809101 - Slc7a11 protein_coding processed_transcript MGP_C57BL6NJ_T0061150.1 MGP_C57BL6NJ_G0027610.1 mouse_genomes_project 3 50857026 50887298 - Slc7a11 protein_coding retained_intron MGP_C57BL6NJ_T0061151.1 MGP_C57BL6NJ_G0027610.1 mouse_genomes_project 3 50882831 50887289 - Slc7a11 protein_coding retained_intron MGP_C57BL6NJ_T0011809.1 MGP_C57BL6NJ_G0009894.1 mouse_genomes_project 3 108203056 108203356 + Gm23820 misc_RNA misc_RNA MGP_C57BL6NJ_T0001387.1 MGP_C57BL6NJ_G0001288.1 mouse_genomes_project 3 89093406 89094950 + TEC TEC MGP_C57BL6NJ_T0001450.1 MGP_C57BL6NJ_G0001351.1 mouse_genomes_project 3 132197419 132200895 - TEC TEC MGP_C57BL6NJ_T0001271.1 MGP_C57BL6NJ_G0001174.1 mouse_genomes_project 3 32462016 32464546 + TEC TEC MGP_C57BL6NJ_T0014664.1 MGP_C57BL6NJ_G0012709.1 mouse_genomes_project 3 140567022 140567451 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014273.1 MGP_C57BL6NJ_G0012318.1 mouse_genomes_project 3 14127297 14127472 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001466.1 MGP_C57BL6NJ_G0001367.1 mouse_genomes_project 3 134382265 134385465 - TEC TEC MGP_C57BL6NJ_T0014630.1 MGP_C57BL6NJ_G0012675.1 mouse_genomes_project 3 127908831 127909435 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100253.1 MGP_C57BL6NJ_G0038299.1 mouse_genomes_project 3 56088742 56088849 + Gm25132 snRNA snRNA MGP_C57BL6NJ_T0014410.1 MGP_C57BL6NJ_G0012455.1 mouse_genomes_project 3 60815780 60816180 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064324.1 MGP_C57BL6NJ_G0028317.1 mouse_genomes_project 3 142991099 143015613 + MGP_C57BL6NJ_P0064324 Bdh2 protein_coding protein_coding MGP_C57BL6NJ_T0064325.1 MGP_C57BL6NJ_G0028317.1 mouse_genomes_project 3 142991139 143015613 + MGP_C57BL6NJ_P0064325 Bdh2 protein_coding protein_coding MGP_C57BL6NJ_T0064326.1 MGP_C57BL6NJ_G0028317.1 mouse_genomes_project 3 142991161 142994295 + Bdh2 protein_coding retained_intron MGP_C57BL6NJ_T0064327.1 MGP_C57BL6NJ_G0028317.1 mouse_genomes_project 3 142998536 143015610 + Bdh2 protein_coding processed_transcript MGP_C57BL6NJ_T0062832.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99561093 99565712 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062833.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99561165 99567585 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062834.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99561235 99563265 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062835.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99561593 99564606 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062836.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99562692 99576697 + MGP_C57BL6NJ_P0062836 Fam63a protein_coding protein_coding MGP_C57BL6NJ_T0062837.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99562692 99576697 + MGP_C57BL6NJ_P0062837 Fam63a protein_coding protein_coding MGP_C57BL6NJ_T0062838.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99562963 99572338 + Fam63a protein_coding retained_intron MGP_C57BL6NJ_T0062839.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99563350 99567585 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062840.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99565587 99567763 + MGP_C57BL6NJ_P0062840 Fam63a protein_coding protein_coding MGP_C57BL6NJ_T0062841.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99565947 99567709 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0062842.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99567696 99576694 + MGP_C57BL6NJ_P0062842 Fam63a protein_coding protein_coding MGP_C57BL6NJ_T0062843.1 MGP_C57BL6NJ_G0027999.1 mouse_genomes_project 3 99572516 99576692 + Fam63a protein_coding processed_transcript MGP_C57BL6NJ_T0007942.1 MGP_C57BL6NJ_G0006495.1 mouse_genomes_project 3 158342002 158449011 - Gm31121 lincRNA lincRNA MGP_C57BL6NJ_T0062745.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99255608 99260826 - Zfp687 protein_coding retained_intron MGP_C57BL6NJ_T0062746.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99255720 99264257 - MGP_C57BL6NJ_P0062746 Zfp687 protein_coding protein_coding MGP_C57BL6NJ_T0062747.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99255850 99264242 - Zfp687 protein_coding retained_intron MGP_C57BL6NJ_T0062748.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99255850 99264423 - Zfp687 protein_coding retained_intron MGP_C57BL6NJ_T0062749.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99255855 99264456 - MGP_C57BL6NJ_P0062749 Zfp687 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062750.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99260858 99264467 - MGP_C57BL6NJ_P0062750 Zfp687 protein_coding protein_coding MGP_C57BL6NJ_T0062751.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99260987 99264243 - MGP_C57BL6NJ_P0062751 Zfp687 protein_coding protein_coding MGP_C57BL6NJ_T0062752.1 MGP_C57BL6NJ_G0027983.1 mouse_genomes_project 3 99261192 99264237 - MGP_C57BL6NJ_P0062752 Zfp687 protein_coding protein_coding MGP_C57BL6NJ_T0060804.1 MGP_C57BL6NJ_G0027555.1 mouse_genomes_project 3 31576280 31599421 - MGP_C57BL6NJ_P0060804 Kcnmb3 protein_coding protein_coding MGP_C57BL6NJ_T0100247.1 MGP_C57BL6NJ_G0038293.1 mouse_genomes_project 3 45854143 45854306 + Gm25796 snRNA snRNA MGP_C57BL6NJ_T0001463.1 MGP_C57BL6NJ_G0001364.1 mouse_genomes_project 3 134177728 134180799 - TEC TEC MGP_C57BL6NJ_T0014561.1 MGP_C57BL6NJ_G0012606.1 mouse_genomes_project 3 106120844 106121381 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064598.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615843 153619637 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064599.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615844 153656597 + MGP_C57BL6NJ_P0064599 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064600.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615844 153656617 + MGP_C57BL6NJ_P0064600 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064601.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615855 153637651 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064602.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615855 153656587 + MGP_C57BL6NJ_P0064602 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064603.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615863 153637562 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064604.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615875 153656591 + MGP_C57BL6NJ_P0064604 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064605.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153615876 153629281 + MGP_C57BL6NJ_P0064605 Odf2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064606.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153616229 153616885 + Odf2l protein_coding processed_transcript MGP_C57BL6NJ_T0064607.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153616229 153623397 + MGP_C57BL6NJ_P0064607 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064608.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153617901 153629273 + MGP_C57BL6NJ_P0064608 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064609.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153625112 153645530 + MGP_C57BL6NJ_P0064609 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064610.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153632890 153650589 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064611.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153639839 153650589 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064612.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153640048 153647085 + Odf2l protein_coding processed_transcript MGP_C57BL6NJ_T0064613.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153640057 153656595 + Odf2l protein_coding retained_intron MGP_C57BL6NJ_T0064614.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153640079 153650541 + MGP_C57BL6NJ_P0064614 Odf2l protein_coding protein_coding MGP_C57BL6NJ_T0064615.1 MGP_C57BL6NJ_G0028372.1 mouse_genomes_project 3 153650529 153656328 + MGP_C57BL6NJ_P0064615 Odf2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014724.1 MGP_C57BL6NJ_G0012769.1 mouse_genomes_project 3 162838434 162838727 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001477.1 MGP_C57BL6NJ_G0001377.1 mouse_genomes_project 3 136581405 136584580 - TEC TEC MGP_C57BL6NJ_T0063199.1 MGP_C57BL6NJ_G0028084.1 mouse_genomes_project 3 105701319 105776398 + MGP_C57BL6NJ_P0063199 Vtcn1 protein_coding protein_coding MGP_C57BL6NJ_T0063152.1 MGP_C57BL6NJ_G0028071.1 mouse_genomes_project 3 103331893 103345931 - MGP_C57BL6NJ_P0063152 protein_coding protein_coding MGP_C57BL6NJ_T0010737.1 MGP_C57BL6NJ_G0008822.1 mouse_genomes_project 3 26297037 26297133 - Mir3092 miRNA miRNA MGP_C57BL6NJ_T0014520.1 MGP_C57BL6NJ_G0012565.1 mouse_genomes_project 3 96956400 96956792 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014710.1 MGP_C57BL6NJ_G0012755.1 mouse_genomes_project 3 153313842 153314479 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007663.1 MGP_C57BL6NJ_G0006279.1 mouse_genomes_project 3 33674588 33676256 + Gm43208 lincRNA lincRNA MGP_C57BL6NJ_T0014551.1 MGP_C57BL6NJ_G0012596.1 mouse_genomes_project 3 103857255 103857843 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001328.1 MGP_C57BL6NJ_G0001230.1 mouse_genomes_project 3 52382949 52384161 - TEC TEC MGP_C57BL6NJ_T0064841.1 MGP_C57BL6NJ_G0028410.1 mouse_genomes_project 3 162244939 162813924 - MGP_C57BL6NJ_P0064841 St6galnac3 protein_coding protein_coding MGP_C57BL6NJ_T0064842.1 MGP_C57BL6NJ_G0028410.1 mouse_genomes_project 3 162252038 162285023 - MGP_C57BL6NJ_P0064842 St6galnac3 protein_coding protein_coding MGP_C57BL6NJ_T0064843.1 MGP_C57BL6NJ_G0028410.1 mouse_genomes_project 3 162253289 162813863 - MGP_C57BL6NJ_P0064843 St6galnac3 protein_coding protein_coding MGP_C57BL6NJ_T0064844.1 MGP_C57BL6NJ_G0028410.1 mouse_genomes_project 3 162575880 162576746 - St6galnac3 protein_coding retained_intron MGP_C57BL6NJ_T0064845.1 MGP_C57BL6NJ_G0028410.1 mouse_genomes_project 3 162576135 162809746 - St6galnac3 protein_coding retained_intron MGP_C57BL6NJ_T0001493.1 MGP_C57BL6NJ_G0001393.1 mouse_genomes_project 3 140596639 140598365 - TEC TEC MGP_C57BL6NJ_T0004451.1 MGP_C57BL6NJ_G0003900.1 mouse_genomes_project 3 100196368 100215532 + C920021L13Rik antisense antisense MGP_C57BL6NJ_T0004452.1 MGP_C57BL6NJ_G0003900.1 mouse_genomes_project 3 100196371 100216669 + C920021L13Rik antisense antisense MGP_C57BL6NJ_T0004453.1 MGP_C57BL6NJ_G0003900.1 mouse_genomes_project 3 100196377 100199772 + C920021L13Rik antisense antisense MGP_C57BL6NJ_T0014497.1 MGP_C57BL6NJ_G0012542.1 mouse_genomes_project 3 89122549 89122837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014507.1 MGP_C57BL6NJ_G0012552.1 mouse_genomes_project 3 92049388 92050142 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102244.1 MGP_C57BL6NJ_G0040236.1 mouse_genomes_project 3 129603685 129603979 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001421.1 MGP_C57BL6NJ_G0001322.1 mouse_genomes_project 3 116406941 116409475 + TEC TEC MGP_C57BL6NJ_T0004386.1 MGP_C57BL6NJ_G0003852.1 mouse_genomes_project 3 45411382 45437458 - 1700027H10Rik antisense antisense MGP_C57BL6NJ_T0061941.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91294874 91303729 - Rrnad1 protein_coding retained_intron MGP_C57BL6NJ_T0061942.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91294874 91303729 - MGP_C57BL6NJ_P0061942 Rrnad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061943.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295178 91303746 - MGP_C57BL6NJ_P0061943 Rrnad1 protein_coding protein_coding MGP_C57BL6NJ_T0061944.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295589 91302963 - Rrnad1 protein_coding retained_intron MGP_C57BL6NJ_T0061945.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295931 91301860 - MGP_C57BL6NJ_P0061945 Rrnad1 protein_coding protein_coding MGP_C57BL6NJ_T0061946.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295932 91297549 - Rrnad1 protein_coding processed_transcript MGP_C57BL6NJ_T0061947.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295936 91303746 - Rrnad1 protein_coding retained_intron MGP_C57BL6NJ_T0061948.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91295936 91304319 - Rrnad1 protein_coding retained_intron MGP_C57BL6NJ_T0061949.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91296056 91304185 - MGP_C57BL6NJ_P0061949 Rrnad1 protein_coding protein_coding MGP_C57BL6NJ_T0061950.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91297326 91300694 - Rrnad1 protein_coding retained_intron MGP_C57BL6NJ_T0061951.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91297499 91301310 - Rrnad1 protein_coding processed_transcript MGP_C57BL6NJ_T0061952.1 MGP_C57BL6NJ_G0027793.1 mouse_genomes_project 3 91297529 91303740 - MGP_C57BL6NJ_P0061952 Rrnad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064125.1 MGP_C57BL6NJ_G0028278.1 mouse_genomes_project 3 134832680 134835177 + MGP_C57BL6NJ_P0064125 Neurog2 protein_coding protein_coding MGP_C57BL6NJ_T0099264.1 MGP_C57BL6NJ_G0037328.1 mouse_genomes_project 3 92175571 92175699 + Gm25820 scaRNA scaRNA MGP_C57BL6NJ_T0001240.1 MGP_C57BL6NJ_G0001143.1 mouse_genomes_project 3 7041088 7044849 + TEC TEC MGP_C57BL6NJ_T0100272.1 MGP_C57BL6NJ_G0038318.1 mouse_genomes_project 3 89174367 89174431 - Gm27811 snRNA snRNA MGP_C57BL6NJ_T0010792.1 MGP_C57BL6NJ_G0008877.1 mouse_genomes_project 3 134728078 134728153 + Mir367 miRNA miRNA MGP_C57BL6NJ_T0063291.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108168616 108179281 + MGP_C57BL6NJ_P0063291 Nras protein_coding protein_coding MGP_C57BL6NJ_T0063292.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108168679 108172866 + MGP_C57BL6NJ_P0063292 Nras protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063293.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108168698 108174731 + MGP_C57BL6NJ_P0063293 Nras protein_coding protein_coding MGP_C57BL6NJ_T0063294.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108168925 108170644 + MGP_C57BL6NJ_P0063294 Nras protein_coding protein_coding MGP_C57BL6NJ_T0063295.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108168927 108173761 + MGP_C57BL6NJ_P0063295 Nras protein_coding protein_coding MGP_C57BL6NJ_T0063296.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108169074 108172865 + MGP_C57BL6NJ_P0063296 Nras protein_coding protein_coding MGP_C57BL6NJ_T0063297.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108169234 108176795 + MGP_C57BL6NJ_P0063297 Nras protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063298.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108169234 108179273 + MGP_C57BL6NJ_P0063298 Nras protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063299.1 MGP_C57BL6NJ_G0028104.1 mouse_genomes_project 3 108169319 108173313 + Nras protein_coding retained_intron MGP_C57BL6NJ_T0099223.1 MGP_C57BL6NJ_G0037287.1 mouse_genomes_project 3 20658368 20658658 + Rprl2 ribozyme ribozyme MGP_C57BL6NJ_T0007690.1 MGP_C57BL6NJ_G0006299.1 mouse_genomes_project 3 38168475 38169787 + Gm43538 lincRNA lincRNA MGP_C57BL6NJ_T0062961.1 MGP_C57BL6NJ_G0028019.1 mouse_genomes_project 3 100228680 100235608 - MGP_C57BL6NJ_P0062961 Car14 protein_coding protein_coding MGP_C57BL6NJ_T0062962.1 MGP_C57BL6NJ_G0028019.1 mouse_genomes_project 3 100230652 100235602 - MGP_C57BL6NJ_P0062962 Car14 protein_coding protein_coding MGP_C57BL6NJ_T0062963.1 MGP_C57BL6NJ_G0028019.1 mouse_genomes_project 3 100232424 100235601 - Car14 protein_coding retained_intron MGP_C57BL6NJ_T0062964.1 MGP_C57BL6NJ_G0028019.1 mouse_genomes_project 3 100232805 100234665 - Car14 protein_coding retained_intron MGP_C57BL6NJ_T0007702.1 MGP_C57BL6NJ_G0006306.1 mouse_genomes_project 3 41159976 41167178 - Gm43733 lincRNA lincRNA MGP_C57BL6NJ_T0007703.1 MGP_C57BL6NJ_G0006306.1 mouse_genomes_project 3 41160933 41167208 - Gm43733 lincRNA lincRNA MGP_C57BL6NJ_T0007704.1 MGP_C57BL6NJ_G0006306.1 mouse_genomes_project 3 41161016 41161947 - Gm43733 lincRNA lincRNA MGP_C57BL6NJ_T0007792.1 MGP_C57BL6NJ_G0006370.1 mouse_genomes_project 3 96131400 96143547 + lincRNA lincRNA MGP_C57BL6NJ_T0014311.1 MGP_C57BL6NJ_G0012356.1 mouse_genomes_project 3 31358244 31359016 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061486.1 MGP_C57BL6NJ_G0027684.1 mouse_genomes_project 3 65329027 65377933 + MGP_C57BL6NJ_P0061486 Gmps protein_coding protein_coding MGP_C57BL6NJ_T0014595.1 MGP_C57BL6NJ_G0012640.1 mouse_genomes_project 3 115663658 115664142 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063137.1 MGP_C57BL6NJ_G0028065.1 mouse_genomes_project 3 102666485 102758618 + Notch2 protein_coding retained_intron MGP_C57BL6NJ_T0063138.1 MGP_C57BL6NJ_G0028065.1 mouse_genomes_project 3 102666496 102809405 + MGP_C57BL6NJ_P0063138 Notch2 protein_coding protein_coding MGP_C57BL6NJ_T0007656.1 MGP_C57BL6NJ_G0006273.1 mouse_genomes_project 3 28838046 28878630 + Mannr lincRNA lincRNA MGP_C57BL6NJ_T0103097.1 MGP_C57BL6NJ_G0040891.1 mouse_genomes_project 3 98105499 98105875 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100323.1 MGP_C57BL6NJ_G0038369.1 mouse_genomes_project 3 165048567 165048671 - Gm23038 snRNA snRNA MGP_C57BL6NJ_T0063619.1 MGP_C57BL6NJ_G0028182.1 mouse_genomes_project 3 113734048 113776496 - MGP_C57BL6NJ_P0063619 Gnai3 protein_coding protein_coding MGP_C57BL6NJ_T0007889.1 MGP_C57BL6NJ_G0006451.1 mouse_genomes_project 3 142021550 142041537 - 4930539C22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007837.1 MGP_C57BL6NJ_G0006410.1 mouse_genomes_project 3 114774298 114776123 - 4930408K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0014457.1 MGP_C57BL6NJ_G0012502.1 mouse_genomes_project 3 71948917 71949644 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099419.1 MGP_C57BL6NJ_G0037476.1 mouse_genomes_project 3 109380660 109383937 - Gm43259 sense_intronic sense_intronic MGP_C57BL6NJ_T0064644.1 MGP_C57BL6NJ_G0028380.1 mouse_genomes_project 3 154553189 154613269 - MGP_C57BL6NJ_P0064644 Wdr63 protein_coding protein_coding MGP_C57BL6NJ_T0064645.1 MGP_C57BL6NJ_G0028380.1 mouse_genomes_project 3 154553191 154559935 - Wdr63 protein_coding processed_transcript MGP_C57BL6NJ_T0064646.1 MGP_C57BL6NJ_G0028380.1 mouse_genomes_project 3 154555500 154561187 - Wdr63 protein_coding processed_transcript MGP_C57BL6NJ_T0099262.1 MGP_C57BL6NJ_G0037326.1 mouse_genomes_project 3 64462416 64462558 + Gm22433 scaRNA scaRNA MGP_C57BL6NJ_T0014292.1 MGP_C57BL6NJ_G0012337.1 mouse_genomes_project 3 19474315 19474736 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001447.1 MGP_C57BL6NJ_G0001348.1 mouse_genomes_project 3 130572245 130576091 - TEC TEC MGP_C57BL6NJ_T0062577.1 MGP_C57BL6NJ_G0027920.1 mouse_genomes_project 3 96524331 96526338 - MGP_C57BL6NJ_P0062577 2310046K23Rik protein_coding protein_coding MGP_C57BL6NJ_T0007813.1 MGP_C57BL6NJ_G0006391.1 mouse_genomes_project 3 106747311 106749125 + Gm43134 lincRNA lincRNA MGP_C57BL6NJ_T0001534.1 MGP_C57BL6NJ_G0001434.1 mouse_genomes_project 3 167455184 167459006 + TEC TEC MGP_C57BL6NJ_T0063905.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809448 127827145 - MGP_C57BL6NJ_P0063905 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063906.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809450 127810871 - Rwdd3 protein_coding retained_intron MGP_C57BL6NJ_T0063907.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809893 127812870 - MGP_C57BL6NJ_P0063907 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063908.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809896 127827138 - MGP_C57BL6NJ_P0063908 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063909.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809915 127827144 - MGP_C57BL6NJ_P0063909 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063910.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127809989 127827144 - MGP_C57BL6NJ_P0063910 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063911.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127810328 127827145 - MGP_C57BL6NJ_P0063911 Rwdd3 protein_coding protein_coding MGP_C57BL6NJ_T0063912.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127812057 127827145 - Rwdd3 protein_coding retained_intron MGP_C57BL6NJ_T0063913.1 MGP_C57BL6NJ_G0028243.1 mouse_genomes_project 3 127824620 127827144 - Rwdd3 protein_coding retained_intron MGP_C57BL6NJ_T0064221.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138090884 138109818 + MGP_C57BL6NJ_P0064221 Etnppl protein_coding protein_coding MGP_C57BL6NJ_T0064222.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138091005 138112530 + MGP_C57BL6NJ_P0064222 Etnppl protein_coding protein_coding MGP_C57BL6NJ_T0064223.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138091008 138096637 + Etnppl protein_coding retained_intron MGP_C57BL6NJ_T0064224.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138091035 138096659 + Etnppl protein_coding retained_intron MGP_C57BL6NJ_T0064225.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138091129 138109686 + MGP_C57BL6NJ_P0064225 Etnppl protein_coding protein_coding MGP_C57BL6NJ_T0064226.1 MGP_C57BL6NJ_G0028296.1 mouse_genomes_project 3 138101528 138104733 + MGP_C57BL6NJ_P0064226 Etnppl protein_coding protein_coding MGP_C57BL6NJ_T0014695.1 MGP_C57BL6NJ_G0012740.1 mouse_genomes_project 3 148224155 148225083 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007807.1 MGP_C57BL6NJ_G0006385.1 mouse_genomes_project 3 103692678 103696286 - 5730437C11Rik lincRNA lincRNA MGP_C57BL6NJ_T0061421.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61629542 61781737 + MGP_C57BL6NJ_P0061421 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061422.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61629754 61789867 + MGP_C57BL6NJ_P0061422 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061423.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61629780 61634621 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061424.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61629786 61810401 + MGP_C57BL6NJ_P0061424 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061425.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61629789 61781722 + MGP_C57BL6NJ_P0061425 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061426.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662652 61729659 + Mbnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0061427.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662937 61784073 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061428.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662954 61816473 + Mbnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0061429.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662982 61729637 + Mbnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0061430.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662982 61702244 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061431.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61662995 61818666 + MGP_C57BL6NJ_P0061431 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061432.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61698726 61699690 + Mbnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0061433.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61699629 61818681 + MGP_C57BL6NJ_P0061433 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061434.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61699629 61818114 + MGP_C57BL6NJ_P0061434 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061435.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61700147 61807298 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061436.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61700216 61814123 + Mbnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0061437.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61700216 61818666 + MGP_C57BL6NJ_P0061437 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061438.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61781613 61801674 + MGP_C57BL6NJ_P0061438 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061439.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61781683 61815738 + MGP_C57BL6NJ_P0061439 Mbnl1 protein_coding protein_coding MGP_C57BL6NJ_T0061440.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61789510 61804044 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0061441.1 MGP_C57BL6NJ_G0027673.1 mouse_genomes_project 3 61812220 61815454 + Mbnl1 protein_coding retained_intron MGP_C57BL6NJ_T0004500.1 MGP_C57BL6NJ_G0003925.1 mouse_genomes_project 3 113926375 113927313 - Gm12523 antisense antisense MGP_C57BL6NJ_T0010797.1 MGP_C57BL6NJ_G0008882.1 mouse_genomes_project 3 144619454 144619571 - Gm44327 miRNA miRNA MGP_C57BL6NJ_T0064090.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134046903 134125171 - MGP_C57BL6NJ_P0064090 protein_coding protein_coding MGP_C57BL6NJ_T0064091.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134046905 134049264 - protein_coding retained_intron MGP_C57BL6NJ_T0064092.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134046905 134070174 - MGP_C57BL6NJ_P0064092 protein_coding protein_coding MGP_C57BL6NJ_T0064093.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134049203 134055095 - MGP_C57BL6NJ_P0064093 protein_coding protein_coding MGP_C57BL6NJ_T0064094.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134049204 134055095 - MGP_C57BL6NJ_P0064094 protein_coding protein_coding MGP_C57BL6NJ_T0064095.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134050869 134053650 - protein_coding retained_intron MGP_C57BL6NJ_T0064096.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134058478 134060400 - protein_coding retained_intron MGP_C57BL6NJ_T0064097.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134063092 134082848 - MGP_C57BL6NJ_P0064097 protein_coding protein_coding MGP_C57BL6NJ_T0064098.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134066899 134082647 - MGP_C57BL6NJ_P0064098 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064099.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134073899 134571928 - MGP_C57BL6NJ_P0064099 protein_coding protein_coding MGP_C57BL6NJ_T0064100.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134076958 134125147 - protein_coding retained_intron MGP_C57BL6NJ_T0064101.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134085780 134673765 - MGP_C57BL6NJ_P0064101 protein_coding protein_coding MGP_C57BL6NJ_T0064102.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134086562 134571867 - MGP_C57BL6NJ_P0064102 protein_coding protein_coding MGP_C57BL6NJ_T0064103.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134142065 134152621 - protein_coding retained_intron MGP_C57BL6NJ_T0064104.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134153146 134571900 - MGP_C57BL6NJ_P0064104 protein_coding protein_coding MGP_C57BL6NJ_T0064105.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134153216 134571900 - MGP_C57BL6NJ_P0064105 protein_coding protein_coding MGP_C57BL6NJ_T0064106.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134159947 134296183 - MGP_C57BL6NJ_P0064106 protein_coding protein_coding MGP_C57BL6NJ_T0064107.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134159947 134571836 - MGP_C57BL6NJ_P0064107 protein_coding protein_coding MGP_C57BL6NJ_T0064108.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134206545 134365365 - MGP_C57BL6NJ_P0064108 protein_coding protein_coding MGP_C57BL6NJ_T0064109.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134207150 134296075 - protein_coding retained_intron MGP_C57BL6NJ_T0064110.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134208975 134571823 - MGP_C57BL6NJ_P0064110 protein_coding protein_coding MGP_C57BL6NJ_T0064111.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134293550 134296041 - protein_coding retained_intron MGP_C57BL6NJ_T0064112.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134482872 134571864 - protein_coding retained_intron MGP_C57BL6NJ_T0064113.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134484472 134673417 - protein_coding retained_intron MGP_C57BL6NJ_T0064114.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134670521 134673675 - protein_coding retained_intron MGP_C57BL6NJ_T0064115.1 MGP_C57BL6NJ_G0028275.1 mouse_genomes_project 3 134673077 134673416 - MGP_C57BL6NJ_P0064115 protein_coding protein_coding MGP_C57BL6NJ_T0014556.1 MGP_C57BL6NJ_G0012601.1 mouse_genomes_project 3 104814548 104814863 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014366.1 MGP_C57BL6NJ_G0012411.1 mouse_genomes_project 3 49549866 49550221 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103114.1 MGP_C57BL6NJ_G0040908.1 mouse_genomes_project 3 111743716 111771412 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0063397.1 MGP_C57BL6NJ_G0028123.1 mouse_genomes_project 3 109913315 109935172 + MGP_C57BL6NJ_P0063397 Slc16a1 protein_coding protein_coding MGP_C57BL6NJ_T0099404.1 MGP_C57BL6NJ_G0037461.1 mouse_genomes_project 3 108218673 108222161 + sense_intronic sense_intronic MGP_C57BL6NJ_T0099397.1 MGP_C57BL6NJ_G0037454.1 mouse_genomes_project 3 106353312 106355519 + Gm42939 sense_intronic sense_intronic MGP_C57BL6NJ_T0014705.1 MGP_C57BL6NJ_G0012750.1 mouse_genomes_project 3 152823795 152827930 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063876.1 MGP_C57BL6NJ_G0028237.1 mouse_genomes_project 3 123266617 123283503 + MGP_C57BL6NJ_P0063876 4930455H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0100311.1 MGP_C57BL6NJ_G0038357.1 mouse_genomes_project 3 139562999 139563106 - Gm22421 snRNA snRNA MGP_C57BL6NJ_T0004447.1 MGP_C57BL6NJ_G0003898.1 mouse_genomes_project 3 99491320 99500522 + Gm16740 antisense antisense MGP_C57BL6NJ_T0001292.1 MGP_C57BL6NJ_G0001195.1 mouse_genomes_project 3 37956237 37957418 - TEC TEC MGP_C57BL6NJ_T0004439.1 MGP_C57BL6NJ_G0003892.1 mouse_genomes_project 3 96070630 96076755 + Gm43735 antisense antisense MGP_C57BL6NJ_T0101566.1 MGP_C57BL6NJ_G0039612.1 mouse_genomes_project 3 39407487 39407572 - Gm23831 snoRNA snoRNA MGP_C57BL6NJ_T0014606.1 MGP_C57BL6NJ_G0012651.1 mouse_genomes_project 3 118984098 118986363 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062895.1 MGP_C57BL6NJ_G0028010.1 mouse_genomes_project 3 99994507 100006159 - MGP_C57BL6NJ_P0062895 Adamtsl4 protein_coding protein_coding MGP_C57BL6NJ_T0062896.1 MGP_C57BL6NJ_G0028010.1 mouse_genomes_project 3 99994510 100006100 - MGP_C57BL6NJ_P0062896 Adamtsl4 protein_coding protein_coding MGP_C57BL6NJ_T0062897.1 MGP_C57BL6NJ_G0028010.1 mouse_genomes_project 3 99995056 99995458 - Adamtsl4 protein_coding processed_transcript MGP_C57BL6NJ_T0062898.1 MGP_C57BL6NJ_G0028010.1 mouse_genomes_project 3 99997331 99998403 - Adamtsl4 protein_coding processed_transcript MGP_C57BL6NJ_T0062899.1 MGP_C57BL6NJ_G0028010.1 mouse_genomes_project 3 100002890 100006107 - MGP_C57BL6NJ_P0062899 Adamtsl4 protein_coding protein_coding MGP_C57BL6NJ_T0007764.1 MGP_C57BL6NJ_G0006355.1 mouse_genomes_project 3 85870473 85949049 - Gm30097 lincRNA lincRNA MGP_C57BL6NJ_T0007765.1 MGP_C57BL6NJ_G0006355.1 mouse_genomes_project 3 85870575 85936221 - Gm30097 lincRNA lincRNA MGP_C57BL6NJ_T0004407.1 MGP_C57BL6NJ_G0003869.1 mouse_genomes_project 3 66670919 66835213 - antisense antisense MGP_C57BL6NJ_T0004408.1 MGP_C57BL6NJ_G0003869.1 mouse_genomes_project 3 66826826 66835185 - antisense antisense MGP_C57BL6NJ_T0064043.1 MGP_C57BL6NJ_G0028268.1 mouse_genomes_project 3 131233382 131237271 + MGP_C57BL6NJ_P0064043 Tram1l1 protein_coding protein_coding MGP_C57BL6NJ_T0063311.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300163 108308902 + MGP_C57BL6NJ_P0063311 Bcas2 protein_coding protein_coding MGP_C57BL6NJ_T0063312.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300211 108307330 + Bcas2 protein_coding retained_intron MGP_C57BL6NJ_T0063313.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300257 108307332 + Bcas2 protein_coding retained_intron MGP_C57BL6NJ_T0063314.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300270 108306952 + MGP_C57BL6NJ_P0063314 Bcas2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063315.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300280 108308916 + MGP_C57BL6NJ_P0063315 Bcas2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063316.1 MGP_C57BL6NJ_G0028107.1 mouse_genomes_project 3 108300293 108303052 + Bcas2 protein_coding retained_intron MGP_C57BL6NJ_T0004513.1 MGP_C57BL6NJ_G0003936.1 mouse_genomes_project 3 129361813 129371494 + Gm43569 antisense antisense MGP_C57BL6NJ_T0014302.1 MGP_C57BL6NJ_G0012347.1 mouse_genomes_project 3 25701209 25702374 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064384.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143825952 144108848 - MGP_C57BL6NJ_P0064384 Bank1 protein_coding protein_coding MGP_C57BL6NJ_T0064385.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143825952 144108828 - MGP_C57BL6NJ_P0064385 Bank1 protein_coding protein_coding MGP_C57BL6NJ_T0064386.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143826038 144108807 - MGP_C57BL6NJ_P0064386 Bank1 protein_coding protein_coding MGP_C57BL6NJ_T0064387.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143826511 143827306 - Bank1 protein_coding retained_intron MGP_C57BL6NJ_T0064388.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143826526 143828693 - Bank1 protein_coding retained_intron MGP_C57BL6NJ_T0064389.1 MGP_C57BL6NJ_G0028325.1 mouse_genomes_project 3 143986482 144023953 - Bank1 protein_coding retained_intron MGP_C57BL6NJ_T0007820.1 MGP_C57BL6NJ_G0006396.1 mouse_genomes_project 3 107787136 107788401 + Gm42682 lincRNA lincRNA MGP_C57BL6NJ_T0062718.1 MGP_C57BL6NJ_G0027980.1 mouse_genomes_project 3 99159371 99170483 + protein_coding retained_intron MGP_C57BL6NJ_T0062719.1 MGP_C57BL6NJ_G0027980.1 mouse_genomes_project 3 99159464 99170483 + protein_coding processed_transcript MGP_C57BL6NJ_T0061772.1 MGP_C57BL6NJ_G0027755.1 mouse_genomes_project 3 86768231 86776227 + MGP_C57BL6NJ_P0061772 Sfrp2 protein_coding protein_coding MGP_C57BL6NJ_T0061773.1 MGP_C57BL6NJ_G0027755.1 mouse_genomes_project 3 86768475 86772054 + Sfrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0061774.1 MGP_C57BL6NJ_G0027755.1 mouse_genomes_project 3 86768763 86774060 + Sfrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0101583.1 MGP_C57BL6NJ_G0039629.1 mouse_genomes_project 3 81651545 81651675 + Gm23440 snoRNA snoRNA MGP_C57BL6NJ_T0007721.1 MGP_C57BL6NJ_G0006321.1 mouse_genomes_project 3 54418362 54436676 + C820005J03Rik lincRNA lincRNA MGP_C57BL6NJ_T0061042.1 MGP_C57BL6NJ_G0027595.1 mouse_genomes_project 3 40171090 40195085 + MGP_C57BL6NJ_P0061042 Intu protein_coding protein_coding MGP_C57BL6NJ_T0061043.1 MGP_C57BL6NJ_G0027595.1 mouse_genomes_project 3 40181394 40253121 + MGP_C57BL6NJ_P0061043 Intu protein_coding protein_coding MGP_C57BL6NJ_T0061044.1 MGP_C57BL6NJ_G0027595.1 mouse_genomes_project 3 40217810 40239580 + MGP_C57BL6NJ_P0061044 Intu protein_coding protein_coding MGP_C57BL6NJ_T0064288.1 MGP_C57BL6NJ_G0028310.1 mouse_genomes_project 3 140632604 140651783 + MGP_C57BL6NJ_P0064288 Ints12 protein_coding protein_coding MGP_C57BL6NJ_T0064289.1 MGP_C57BL6NJ_G0028310.1 mouse_genomes_project 3 140632702 140642859 + Ints12 protein_coding retained_intron MGP_C57BL6NJ_T0064290.1 MGP_C57BL6NJ_G0028310.1 mouse_genomes_project 3 140641151 140647880 + Ints12 protein_coding processed_transcript MGP_C57BL6NJ_T0103109.1 MGP_C57BL6NJ_G0040903.1 mouse_genomes_project 3 103280993 103295949 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014623.1 MGP_C57BL6NJ_G0012668.1 mouse_genomes_project 3 123507553 123508196 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001513.1 MGP_C57BL6NJ_G0001413.1 mouse_genomes_project 3 161159100 161160215 + TEC TEC MGP_C57BL6NJ_T0010730.1 MGP_C57BL6NJ_G0008815.1 mouse_genomes_project 3 73232 73332 - Gm28002 miRNA miRNA MGP_C57BL6NJ_T0001484.1 MGP_C57BL6NJ_G0001384.1 mouse_genomes_project 3 138178814 138181185 - TEC TEC MGP_C57BL6NJ_T0001409.1 MGP_C57BL6NJ_G0001310.1 mouse_genomes_project 3 102779540 102782603 + TEC TEC MGP_C57BL6NJ_T0007810.1 MGP_C57BL6NJ_G0006388.1 mouse_genomes_project 3 105337204 105371311 + Gm12474 lincRNA lincRNA MGP_C57BL6NJ_T0100306.1 MGP_C57BL6NJ_G0038352.1 mouse_genomes_project 3 129256709 129256865 + Gm25153 snRNA snRNA MGP_C57BL6NJ_T0062182.1 MGP_C57BL6NJ_G0027835.1 mouse_genomes_project 3 92706146 92716599 + MGP_C57BL6NJ_P0062182 Pklr protein_coding protein_coding MGP_C57BL6NJ_T0062183.1 MGP_C57BL6NJ_G0027835.1 mouse_genomes_project 3 92706178 92707464 + Pklr protein_coding processed_transcript MGP_C57BL6NJ_T0062184.1 MGP_C57BL6NJ_G0027835.1 mouse_genomes_project 3 92706576 92718139 + MGP_C57BL6NJ_P0062184 Pklr protein_coding protein_coding MGP_C57BL6NJ_T0062185.1 MGP_C57BL6NJ_G0027835.1 mouse_genomes_project 3 92706583 92711544 + MGP_C57BL6NJ_P0062185 Pklr protein_coding protein_coding MGP_C57BL6NJ_T0062186.1 MGP_C57BL6NJ_G0027835.1 mouse_genomes_project 3 92706627 92710917 + Pklr protein_coding processed_transcript MGP_C57BL6NJ_T0007905.1 MGP_C57BL6NJ_G0006466.1 mouse_genomes_project 3 151170429 151187979 + lincRNA lincRNA MGP_C57BL6NJ_T0064020.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130117382 130219437 + MGP_C57BL6NJ_P0064020 Sec24d protein_coding protein_coding MGP_C57BL6NJ_T0064021.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130117406 130131704 + Sec24d protein_coding retained_intron MGP_C57BL6NJ_T0064022.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130117417 130124398 + MGP_C57BL6NJ_P0064022 Sec24d protein_coding protein_coding MGP_C57BL6NJ_T0064023.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130142765 130219432 + Sec24d protein_coding retained_intron MGP_C57BL6NJ_T0064024.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130189144 130191091 + Sec24d protein_coding retained_intron MGP_C57BL6NJ_T0064025.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130191623 130203722 + Sec24d protein_coding processed_transcript MGP_C57BL6NJ_T0064026.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130208594 130209652 + Sec24d protein_coding retained_intron MGP_C57BL6NJ_T0064027.1 MGP_C57BL6NJ_G0028264.1 mouse_genomes_project 3 130218509 130219432 + Sec24d protein_coding retained_intron MGP_C57BL6NJ_T0064684.1 MGP_C57BL6NJ_G0028390.1 mouse_genomes_project 3 155134675 155171275 - MGP_C57BL6NJ_P0064684 Dnase2b protein_coding protein_coding MGP_C57BL6NJ_T0064685.1 MGP_C57BL6NJ_G0028390.1 mouse_genomes_project 3 155134675 155151912 - MGP_C57BL6NJ_P0064685 Dnase2b protein_coding protein_coding MGP_C57BL6NJ_T0004536.1 MGP_C57BL6NJ_G0003954.1 mouse_genomes_project 3 143675479 143701805 + antisense antisense MGP_C57BL6NJ_T0004537.1 MGP_C57BL6NJ_G0003954.1 mouse_genomes_project 3 143701035 143950863 + antisense antisense MGP_C57BL6NJ_T0061046.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40291252 40308708 + MGP_C57BL6NJ_P0061046 Hspa4l protein_coding protein_coding MGP_C57BL6NJ_T0061047.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40292140 40334086 + MGP_C57BL6NJ_P0061047 Hspa4l protein_coding protein_coding MGP_C57BL6NJ_T0061048.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40292188 40351759 + MGP_C57BL6NJ_P0061048 Hspa4l protein_coding protein_coding MGP_C57BL6NJ_T0061049.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40292242 40312477 + MGP_C57BL6NJ_P0061049 Hspa4l protein_coding protein_coding MGP_C57BL6NJ_T0061050.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40292341 40310235 + Hspa4l protein_coding retained_intron MGP_C57BL6NJ_T0061051.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40292626 40345457 + MGP_C57BL6NJ_P0061051 Hspa4l protein_coding protein_coding MGP_C57BL6NJ_T0061052.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40325141 40334328 + Hspa4l protein_coding retained_intron MGP_C57BL6NJ_T0061053.1 MGP_C57BL6NJ_G0027597.1 mouse_genomes_project 3 40336493 40339304 + Hspa4l protein_coding retained_intron MGP_C57BL6NJ_T0004409.1 MGP_C57BL6NJ_G0003870.1 mouse_genomes_project 3 66862424 66891178 - A730090N16Rik antisense antisense MGP_C57BL6NJ_T0063777.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120084718 120303809 + MGP_C57BL6NJ_P0063777 Col11a1 protein_coding protein_coding MGP_C57BL6NJ_T0063778.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120084718 120172470 + MGP_C57BL6NJ_P0063778 Col11a1 protein_coding protein_coding MGP_C57BL6NJ_T0063779.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120084812 120087331 + Col11a1 protein_coding retained_intron MGP_C57BL6NJ_T0063780.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120120728 120121697 + Col11a1 protein_coding retained_intron MGP_C57BL6NJ_T0063781.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120229166 120236009 + Col11a1 protein_coding retained_intron MGP_C57BL6NJ_T0063782.1 MGP_C57BL6NJ_G0028217.1 mouse_genomes_project 3 120247299 120302408 + MGP_C57BL6NJ_P0063782 Col11a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001281.1 MGP_C57BL6NJ_G0001184.1 mouse_genomes_project 3 35361790 35364433 - TEC TEC MGP_C57BL6NJ_T0101622.1 MGP_C57BL6NJ_G0039668.1 mouse_genomes_project 3 152993261 152993389 - Gm24406 snoRNA snoRNA MGP_C57BL6NJ_T0001407.1 MGP_C57BL6NJ_G0001308.1 mouse_genomes_project 3 102233820 102237716 + TEC TEC MGP_C57BL6NJ_T0064683.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155120607 155182176 + MGP_C57BL6NJ_P0064683 Uox protein_coding protein_coding MGP_C57BL6NJ_T0064686.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155152376 155188591 + MGP_C57BL6NJ_P0064686 Uox protein_coding protein_coding MGP_C57BL6NJ_T0064687.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155152447 155167871 + MGP_C57BL6NJ_P0064687 Uox protein_coding protein_coding MGP_C57BL6NJ_T0064688.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155152464 155186933 + MGP_C57BL6NJ_P0064688 Uox protein_coding protein_coding MGP_C57BL6NJ_T0064689.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155152465 155167989 + Uox protein_coding retained_intron MGP_C57BL6NJ_T0064690.1 MGP_C57BL6NJ_G0028389.1 mouse_genomes_project 3 155165530 155167894 + Uox protein_coding retained_intron MGP_C57BL6NJ_T0061317.1 MGP_C57BL6NJ_G0027643.1 mouse_genomes_project 3 56244861 56255091 - MGP_C57BL6NJ_P0061317 Gm21954 protein_coding protein_coding MGP_C57BL6NJ_T0102488.1 MGP_C57BL6NJ_G0040361.1 mouse_genomes_project 3 66285626 66285859 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0001491.1 MGP_C57BL6NJ_G0001391.1 mouse_genomes_project 3 140353774 140356989 + TEC TEC MGP_C57BL6NJ_T0061282.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55805182 55810332 - MGP_C57BL6NJ_P0061282 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0061283.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55805188 55814742 - MGP_C57BL6NJ_P0061283 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0061284.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55805190 55814729 - MGP_C57BL6NJ_P0061284 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0061285.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55805191 55815188 - MGP_C57BL6NJ_P0061285 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0061286.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55810279 55815169 - MGP_C57BL6NJ_P0061286 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0061287.1 MGP_C57BL6NJ_G0027638.1 mouse_genomes_project 3 55810673 55814724 - MGP_C57BL6NJ_P0061287 Ccna1 protein_coding protein_coding MGP_C57BL6NJ_T0098865.1 MGP_C57BL6NJ_G0036929.1 mouse_genomes_project 3 88079272 88079797 - pseudogene pseudogene MGP_C57BL6NJ_T0063973.1 MGP_C57BL6NJ_G0028254.1 mouse_genomes_project 3 129037298 129048182 + MGP_C57BL6NJ_P0063973 Dnttip2 protein_coding protein_coding MGP_C57BL6NJ_T0063974.1 MGP_C57BL6NJ_G0028254.1 mouse_genomes_project 3 129037328 129039121 + Dnttip2 protein_coding processed_transcript MGP_C57BL6NJ_T0063975.1 MGP_C57BL6NJ_G0028254.1 mouse_genomes_project 3 129038927 129048160 + Dnttip2 protein_coding processed_transcript MGP_C57BL6NJ_T0063976.1 MGP_C57BL6NJ_G0028254.1 mouse_genomes_project 3 129039683 129042524 + Dnttip2 protein_coding retained_intron MGP_C57BL6NJ_T0063977.1 MGP_C57BL6NJ_G0028254.1 mouse_genomes_project 3 129043487 129048009 + Dnttip2 protein_coding retained_intron MGP_C57BL6NJ_T0060532.1 MGP_C57BL6NJ_G0027497.1 mouse_genomes_project 3 13242017 13278362 - MGP_C57BL6NJ_P0060532 Gm9733 protein_coding protein_coding MGP_C57BL6NJ_T0001239.1 MGP_C57BL6NJ_G0001142.1 mouse_genomes_project 3 6189012 6191978 - TEC TEC MGP_C57BL6NJ_T0060853.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100113 32249950 - MGP_C57BL6NJ_P0060853 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060854.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100113 32248958 - MGP_C57BL6NJ_P0060854 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060855.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100113 32249950 - MGP_C57BL6NJ_P0060855 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060856.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100113 32249950 - MGP_C57BL6NJ_P0060856 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060857.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100113 32249950 - MGP_C57BL6NJ_P0060857 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060858.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100339 32249919 - MGP_C57BL6NJ_P0060858 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060859.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100659 32318728 - MGP_C57BL6NJ_P0060859 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060860.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32100659 32249925 - MGP_C57BL6NJ_P0060860 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060861.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32101335 32149887 - MGP_C57BL6NJ_P0060861 Pex5l protein_coding protein_coding MGP_C57BL6NJ_T0060862.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32105042 32318893 - Pex5l protein_coding retained_intron MGP_C57BL6NJ_T0060863.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32304622 32318722 - Pex5l protein_coding processed_transcript MGP_C57BL6NJ_T0060864.1 MGP_C57BL6NJ_G0027563.1 mouse_genomes_project 3 32315615 32318829 - Pex5l protein_coding retained_intron MGP_C57BL6NJ_T0007612.1 MGP_C57BL6NJ_G0006243.1 mouse_genomes_project 3 2757071 2759410 - 4930555M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0063620.1 MGP_C57BL6NJ_G0028183.1 mouse_genomes_project 3 113778670 113786869 - MGP_C57BL6NJ_P0063620 Gpr61 protein_coding protein_coding MGP_C57BL6NJ_T0063621.1 MGP_C57BL6NJ_G0028183.1 mouse_genomes_project 3 113779006 113786869 - MGP_C57BL6NJ_P0063621 Gpr61 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010760.1 MGP_C57BL6NJ_G0008845.1 mouse_genomes_project 3 91613283 91613391 - Gm25641 miRNA miRNA MGP_C57BL6NJ_T0100293.1 MGP_C57BL6NJ_G0038339.1 mouse_genomes_project 3 100918490 100918655 + Gm22614 snRNA snRNA MGP_C57BL6NJ_T0100261.1 MGP_C57BL6NJ_G0038307.1 mouse_genomes_project 3 65103867 65103965 + Gm23500 snRNA snRNA MGP_C57BL6NJ_T0061110.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41277363 41400856 - MGP_C57BL6NJ_P0061110 Sclt1 protein_coding protein_coding MGP_C57BL6NJ_T0061111.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41277585 41400370 - MGP_C57BL6NJ_P0061111 Sclt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061112.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41277585 41400823 - MGP_C57BL6NJ_P0061112 Sclt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061113.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41277749 41280769 - Sclt1 protein_coding retained_intron MGP_C57BL6NJ_T0061114.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41280045 41329026 - Sclt1 protein_coding retained_intron MGP_C57BL6NJ_T0061115.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41313213 41319991 - MGP_C57BL6NJ_P0061115 Sclt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061116.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41329534 41376832 - Sclt1 protein_coding retained_intron MGP_C57BL6NJ_T0061117.1 MGP_C57BL6NJ_G0027605.1 mouse_genomes_project 3 41399860 41400747 - Sclt1 protein_coding retained_intron MGP_C57BL6NJ_T0014422.1 MGP_C57BL6NJ_G0012467.1 mouse_genomes_project 3 65162570 65163221 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061726.1 MGP_C57BL6NJ_G0027740.1 mouse_genomes_project 3 83881367 84068214 + MGP_C57BL6NJ_P0061726 Pdgfc protein_coding protein_coding MGP_C57BL6NJ_T0061727.1 MGP_C57BL6NJ_G0027740.1 mouse_genomes_project 3 83882123 84068208 + MGP_C57BL6NJ_P0061727 Pdgfc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061728.1 MGP_C57BL6NJ_G0027740.1 mouse_genomes_project 3 83882375 84064944 + MGP_C57BL6NJ_P0061728 Pdgfc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062021.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91746547 91776444 + MGP_C57BL6NJ_P0062021 Smg5 protein_coding protein_coding MGP_C57BL6NJ_T0062022.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91746598 91766813 + Smg5 protein_coding retained_intron MGP_C57BL6NJ_T0062023.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91746652 91755472 + Smg5 protein_coding retained_intron MGP_C57BL6NJ_T0062024.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91752875 91761464 + Smg5 protein_coding processed_transcript MGP_C57BL6NJ_T0062025.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91754596 91764815 + MGP_C57BL6NJ_P0062025 Smg5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062026.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91766574 91768721 + Smg5 protein_coding retained_intron MGP_C57BL6NJ_T0062027.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91772299 91773743 + Smg5 protein_coding retained_intron MGP_C57BL6NJ_T0062028.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91772452 91775376 + Smg5 protein_coding processed_transcript MGP_C57BL6NJ_T0062029.1 MGP_C57BL6NJ_G0027810.1 mouse_genomes_project 3 91774641 91775197 + Smg5 protein_coding retained_intron MGP_C57BL6NJ_T0014687.1 MGP_C57BL6NJ_G0012732.1 mouse_genomes_project 3 146447403 146447772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060751.1 MGP_C57BL6NJ_G0027543.1 mouse_genomes_project 3 29678403 29702599 - MGP_C57BL6NJ_P0060751 Lrrc31 protein_coding protein_coding MGP_C57BL6NJ_T0060752.1 MGP_C57BL6NJ_G0027543.1 mouse_genomes_project 3 29682025 29702612 - MGP_C57BL6NJ_P0060752 Lrrc31 protein_coding protein_coding MGP_C57BL6NJ_T0060753.1 MGP_C57BL6NJ_G0027543.1 mouse_genomes_project 3 29700715 29702537 - Lrrc31 protein_coding retained_intron MGP_C57BL6NJ_T0060754.1 MGP_C57BL6NJ_G0027543.1 mouse_genomes_project 3 29700890 29702579 - Lrrc31 protein_coding processed_transcript MGP_C57BL6NJ_T0061005.1 MGP_C57BL6NJ_G0027587.1 mouse_genomes_project 3 36797852 36806749 + MGP_C57BL6NJ_P0061005 Bbs12 protein_coding protein_coding MGP_C57BL6NJ_T0061006.1 MGP_C57BL6NJ_G0027587.1 mouse_genomes_project 3 36797854 36806752 + MGP_C57BL6NJ_P0061006 Bbs12 protein_coding protein_coding MGP_C57BL6NJ_T0007925.1 MGP_C57BL6NJ_G0006483.1 mouse_genomes_project 3 152666704 152667800 + Gm43446 lincRNA lincRNA MGP_C57BL6NJ_T0004564.1 MGP_C57BL6NJ_G0003974.1 mouse_genomes_project 3 163022872 163026634 + Gm43400 antisense antisense MGP_C57BL6NJ_T0014700.1 MGP_C57BL6NJ_G0012745.1 mouse_genomes_project 3 150421212 150421552 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062510.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94223971 94236063 - MGP_C57BL6NJ_P0062510 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062511.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94223971 94236065 - MGP_C57BL6NJ_P0062511 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062512.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94223971 94236064 - MGP_C57BL6NJ_P0062512 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062513.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94223973 94236075 - MGP_C57BL6NJ_P0062513 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062514.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94223980 94236111 - MGP_C57BL6NJ_P0062514 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062515.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94224489 94236087 - MGP_C57BL6NJ_P0062515 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062516.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94224690 94236098 - MGP_C57BL6NJ_P0062516 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062517.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94227938 94236089 - MGP_C57BL6NJ_P0062517 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0062518.1 MGP_C57BL6NJ_G0027886.1 mouse_genomes_project 3 94228911 94234819 - MGP_C57BL6NJ_P0062518 Chtop protein_coding protein_coding MGP_C57BL6NJ_T0010742.1 MGP_C57BL6NJ_G0008827.1 mouse_genomes_project 3 32435638 32435743 - Gm27974 miRNA miRNA MGP_C57BL6NJ_T0001360.1 MGP_C57BL6NJ_G0001261.1 mouse_genomes_project 3 60691124 60693562 + TEC TEC MGP_C57BL6NJ_T0063534.1 MGP_C57BL6NJ_G0028161.1 mouse_genomes_project 3 112836730 112842678 + MGP_C57BL6NJ_P0063534 Lamtor5 protein_coding protein_coding MGP_C57BL6NJ_T0063535.1 MGP_C57BL6NJ_G0028161.1 mouse_genomes_project 3 112836871 112842681 + MGP_C57BL6NJ_P0063535 Lamtor5 protein_coding protein_coding MGP_C57BL6NJ_T0014693.1 MGP_C57BL6NJ_G0012738.1 mouse_genomes_project 3 147398881 147399323 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063845.1 MGP_C57BL6NJ_G0028231.1 mouse_genomes_project 3 122889532 122921026 - MGP_C57BL6NJ_P0063845 Mfsd14a protein_coding protein_coding MGP_C57BL6NJ_T0063846.1 MGP_C57BL6NJ_G0028231.1 mouse_genomes_project 3 122890962 122894842 - Mfsd14a protein_coding retained_intron MGP_C57BL6NJ_T0063847.1 MGP_C57BL6NJ_G0028231.1 mouse_genomes_project 3 122899668 122904101 - Mfsd14a protein_coding retained_intron MGP_C57BL6NJ_T0063849.1 MGP_C57BL6NJ_G0028231.1 mouse_genomes_project 3 122906486 122920840 - Mfsd14a protein_coding retained_intron MGP_C57BL6NJ_T0063850.1 MGP_C57BL6NJ_G0028231.1 mouse_genomes_project 3 122909246 122920959 - Mfsd14a protein_coding retained_intron MGP_C57BL6NJ_T0061969.1 MGP_C57BL6NJ_G0027799.1 mouse_genomes_project 3 91426036 91441967 + MGP_C57BL6NJ_P0061969 Gpatch4 protein_coding protein_coding MGP_C57BL6NJ_T0061970.1 MGP_C57BL6NJ_G0027799.1 mouse_genomes_project 3 91426036 91441964 + MGP_C57BL6NJ_P0061970 Gpatch4 protein_coding protein_coding MGP_C57BL6NJ_T0061971.1 MGP_C57BL6NJ_G0027799.1 mouse_genomes_project 3 91426037 91440634 + Gpatch4 protein_coding retained_intron MGP_C57BL6NJ_T0061972.1 MGP_C57BL6NJ_G0027799.1 mouse_genomes_project 3 91426052 91441174 + MGP_C57BL6NJ_P0061972 Gpatch4 protein_coding protein_coding MGP_C57BL6NJ_T0061973.1 MGP_C57BL6NJ_G0027799.1 mouse_genomes_project 3 91426056 91441950 + MGP_C57BL6NJ_P0061973 Gpatch4 protein_coding protein_coding MGP_C57BL6NJ_T0063787.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122087981 122128373 + MGP_C57BL6NJ_P0063787 Dph5 protein_coding protein_coding MGP_C57BL6NJ_T0063788.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122087996 122088624 + MGP_C57BL6NJ_P0063788 Dph5 protein_coding protein_coding MGP_C57BL6NJ_T0063789.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088291 122099973 + MGP_C57BL6NJ_P0063789 Dph5 protein_coding protein_coding MGP_C57BL6NJ_T0063790.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088309 122135776 + MGP_C57BL6NJ_P0063790 Dph5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063791.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088317 122101338 + MGP_C57BL6NJ_P0063791 Dph5 protein_coding protein_coding MGP_C57BL6NJ_T0063792.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088327 122130747 + MGP_C57BL6NJ_P0063792 Dph5 protein_coding protein_coding MGP_C57BL6NJ_T0063793.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088338 122092419 + Dph5 protein_coding retained_intron MGP_C57BL6NJ_T0063794.1 MGP_C57BL6NJ_G0028220.1 mouse_genomes_project 3 122088339 122093134 + Dph5 protein_coding retained_intron MGP_C57BL6NJ_T0014730.1 MGP_C57BL6NJ_G0012775.1 mouse_genomes_project 3 167339635 167340045 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007682.1 MGP_C57BL6NJ_G0006293.1 mouse_genomes_project 3 37268070 37274331 + Gm42921 lincRNA lincRNA MGP_C57BL6NJ_T0014446.1 MGP_C57BL6NJ_G0012491.1 mouse_genomes_project 3 70664294 70664633 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064882.1 MGP_C57BL6NJ_G0028416.1 mouse_genomes_project 3 163480908 163508128 - MGP_C57BL6NJ_P0064882 Lhx8 protein_coding protein_coding MGP_C57BL6NJ_T0064883.1 MGP_C57BL6NJ_G0028416.1 mouse_genomes_project 3 163480910 163507528 - MGP_C57BL6NJ_P0064883 Lhx8 protein_coding protein_coding MGP_C57BL6NJ_T0064884.1 MGP_C57BL6NJ_G0028416.1 mouse_genomes_project 3 163481592 163505635 - MGP_C57BL6NJ_P0064884 Lhx8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064885.1 MGP_C57BL6NJ_G0028416.1 mouse_genomes_project 3 163492879 163502352 - Lhx8 protein_coding retained_intron MGP_C57BL6NJ_T0064886.1 MGP_C57BL6NJ_G0028416.1 mouse_genomes_project 3 163499725 163506103 - MGP_C57BL6NJ_P0064886 Lhx8 protein_coding protein_coding MGP_C57BL6NJ_T0061208.1 MGP_C57BL6NJ_G0027622.1 mouse_genomes_project 3 53618556 53859258 + MGP_C57BL6NJ_P0061208 Lhfp protein_coding protein_coding MGP_C57BL6NJ_T0061209.1 MGP_C57BL6NJ_G0027622.1 mouse_genomes_project 3 53618587 53859254 + Lhfp protein_coding processed_transcript MGP_C57BL6NJ_T0061210.1 MGP_C57BL6NJ_G0027622.1 mouse_genomes_project 3 53618611 53859258 + MGP_C57BL6NJ_P0061210 Lhfp protein_coding protein_coding MGP_C57BL6NJ_T0061211.1 MGP_C57BL6NJ_G0027622.1 mouse_genomes_project 3 53811521 53814620 + Lhfp protein_coding retained_intron MGP_C57BL6NJ_T0007824.1 MGP_C57BL6NJ_G0006400.1 mouse_genomes_project 3 111102199 111103446 - Gm43848 lincRNA lincRNA MGP_C57BL6NJ_T0061490.1 MGP_C57BL6NJ_G0027687.1 mouse_genomes_project 3 65639963 65673889 - MGP_C57BL6NJ_P0061490 Vmn2r3 protein_coding protein_coding MGP_C57BL6NJ_T0061491.1 MGP_C57BL6NJ_G0027687.1 mouse_genomes_project 3 65639963 65673967 - MGP_C57BL6NJ_P0061491 Vmn2r3 protein_coding protein_coding MGP_C57BL6NJ_T0061953.1 MGP_C57BL6NJ_G0027794.1 mouse_genomes_project 3 91303915 91315274 + MGP_C57BL6NJ_P0061953 Isg20l2 protein_coding protein_coding MGP_C57BL6NJ_T0004528.1 MGP_C57BL6NJ_G0003948.1 mouse_genomes_project 3 137163417 137176244 + 6330410L21Rik antisense antisense MGP_C57BL6NJ_T0064230.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138202065 138205572 - MGP_C57BL6NJ_P0064230 Rpl34 protein_coding protein_coding MGP_C57BL6NJ_T0064231.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138202068 138202641 - Rpl34 protein_coding retained_intron MGP_C57BL6NJ_T0064232.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138202073 138205633 - MGP_C57BL6NJ_P0064232 Rpl34 protein_coding protein_coding MGP_C57BL6NJ_T0064233.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138202098 138205577 - Rpl34 protein_coding retained_intron MGP_C57BL6NJ_T0064234.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138202110 138205556 - MGP_C57BL6NJ_P0064234 Rpl34 protein_coding protein_coding MGP_C57BL6NJ_T0064235.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138203566 138205569 - MGP_C57BL6NJ_P0064235 Rpl34 protein_coding protein_coding MGP_C57BL6NJ_T0064236.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138203801 138205582 - Rpl34 protein_coding retained_intron MGP_C57BL6NJ_T0064237.1 MGP_C57BL6NJ_G0028298.1 mouse_genomes_project 3 138204072 138205581 - MGP_C57BL6NJ_P0064237 Rpl34 protein_coding protein_coding MGP_C57BL6NJ_T0062848.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99596036 99604969 + MGP_C57BL6NJ_P0062848 Cers2 protein_coding protein_coding MGP_C57BL6NJ_T0062849.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99596329 99606688 + MGP_C57BL6NJ_P0062849 Cers2 protein_coding protein_coding MGP_C57BL6NJ_T0062850.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99596492 99603862 + Cers2 protein_coding retained_intron MGP_C57BL6NJ_T0062851.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99596512 99604412 + Cers2 protein_coding retained_intron MGP_C57BL6NJ_T0062852.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99600438 99603639 + Cers2 protein_coding retained_intron MGP_C57BL6NJ_T0062853.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99601109 99604131 + MGP_C57BL6NJ_P0062853 Cers2 protein_coding protein_coding MGP_C57BL6NJ_T0062854.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99601880 99605044 + MGP_C57BL6NJ_P0062854 Cers2 protein_coding protein_coding MGP_C57BL6NJ_T0062855.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99603221 99605761 + Cers2 protein_coding retained_intron MGP_C57BL6NJ_T0062856.1 MGP_C57BL6NJ_G0028001.1 mouse_genomes_project 3 99604028 99605046 + Cers2 protein_coding retained_intron MGP_C57BL6NJ_T0001254.1 MGP_C57BL6NJ_G0001157.1 mouse_genomes_project 3 27089043 27090781 + TEC TEC MGP_C57BL6NJ_T0063431.1 MGP_C57BL6NJ_G0028131.1 mouse_genomes_project 3 110301756 110357017 - MGP_C57BL6NJ_P0063431 Cttnbp2nl protein_coding protein_coding MGP_C57BL6NJ_T0063432.1 MGP_C57BL6NJ_G0028131.1 mouse_genomes_project 3 110301758 110356822 - MGP_C57BL6NJ_P0063432 Cttnbp2nl protein_coding protein_coding MGP_C57BL6NJ_T0063433.1 MGP_C57BL6NJ_G0028131.1 mouse_genomes_project 3 110305906 110356825 - MGP_C57BL6NJ_P0063433 Cttnbp2nl protein_coding protein_coding MGP_C57BL6NJ_T0063434.1 MGP_C57BL6NJ_G0028131.1 mouse_genomes_project 3 110305936 110356796 - Cttnbp2nl protein_coding retained_intron MGP_C57BL6NJ_T0004398.1 MGP_C57BL6NJ_G0003862.1 mouse_genomes_project 3 56686125 56731076 + Gm43376 antisense antisense MGP_C57BL6NJ_T0004399.1 MGP_C57BL6NJ_G0003862.1 mouse_genomes_project 3 56686196 56688083 + Gm43376 antisense antisense MGP_C57BL6NJ_T0014714.1 MGP_C57BL6NJ_G0012759.1 mouse_genomes_project 3 155382496 155383175 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014349.1 MGP_C57BL6NJ_G0012394.1 mouse_genomes_project 3 42019347 42019495 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007646.1 MGP_C57BL6NJ_G0006263.1 mouse_genomes_project 3 19639241 19639960 - Gm29137 lincRNA lincRNA MGP_C57BL6NJ_T0007866.1 MGP_C57BL6NJ_G0006431.1 mouse_genomes_project 3 135137280 135182339 + 9830132P13Rik lincRNA lincRNA MGP_C57BL6NJ_T0060599.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18288465 18335785 - MGP_C57BL6NJ_P0060599 Hps3 protein_coding protein_coding MGP_C57BL6NJ_T0060600.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18288468 18335750 - Hps3 protein_coding retained_intron MGP_C57BL6NJ_T0060601.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18288568 18308899 - Hps3 protein_coding processed_transcript MGP_C57BL6NJ_T0060602.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18288571 18335772 - MGP_C57BL6NJ_P0060602 Hps3 protein_coding protein_coding MGP_C57BL6NJ_T0060603.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18294737 18307705 - Hps3 protein_coding processed_transcript MGP_C57BL6NJ_T0060604.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18306002 18335772 - Hps3 protein_coding retained_intron MGP_C57BL6NJ_T0060605.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18307297 18335764 - Hps3 protein_coding retained_intron MGP_C57BL6NJ_T0060606.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18309724 18335772 - Hps3 protein_coding retained_intron MGP_C57BL6NJ_T0060607.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18309995 18335766 - Hps3 protein_coding processed_transcript MGP_C57BL6NJ_T0060608.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18311138 18335764 - Hps3 protein_coding retained_intron MGP_C57BL6NJ_T0060609.1 MGP_C57BL6NJ_G0027515.1 mouse_genomes_project 3 18335297 18335772 - Hps3 protein_coding processed_transcript MGP_C57BL6NJ_T0099428.1 MGP_C57BL6NJ_G0037485.1 mouse_genomes_project 3 110127168 110128918 - Gm42659 sense_intronic sense_intronic MGP_C57BL6NJ_T0001524.1 MGP_C57BL6NJ_G0001424.1 mouse_genomes_project 3 164133614 164137606 + TEC TEC MGP_C57BL6NJ_T0100264.1 MGP_C57BL6NJ_G0038310.1 mouse_genomes_project 3 67675678 67675831 - Gm26442 snRNA snRNA MGP_C57BL6NJ_T0014728.1 MGP_C57BL6NJ_G0012773.1 mouse_genomes_project 3 166829867 166830637 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063822.1 MGP_C57BL6NJ_G0028227.1 mouse_genomes_project 3 122756782 122790454 + MGP_C57BL6NJ_P0063822 Dbt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063823.1 MGP_C57BL6NJ_G0028227.1 mouse_genomes_project 3 122756795 122801258 + MGP_C57BL6NJ_P0063823 Dbt protein_coding protein_coding MGP_C57BL6NJ_T0063824.1 MGP_C57BL6NJ_G0028227.1 mouse_genomes_project 3 122764966 122783596 + Dbt protein_coding retained_intron MGP_C57BL6NJ_T0103123.1 MGP_C57BL6NJ_G0040917.1 mouse_genomes_project 3 139365217 139365783 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001432.1 MGP_C57BL6NJ_G0001333.1 mouse_genomes_project 3 127669420 127669721 - TEC TEC MGP_C57BL6NJ_T0062558.1 MGP_C57BL6NJ_G0027902.1 mouse_genomes_project 3 94873884 94876537 - MGP_C57BL6NJ_P0062558 9130204L05Rik protein_coding protein_coding MGP_C57BL6NJ_T0014573.1 MGP_C57BL6NJ_G0012618.1 mouse_genomes_project 3 108385237 108385526 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062361.1 MGP_C57BL6NJ_G0027867.1 mouse_genomes_project 3 93491148 93550694 - MGP_C57BL6NJ_P0062361 Il6ra protein_coding protein_coding MGP_C57BL6NJ_T0062362.1 MGP_C57BL6NJ_G0027867.1 mouse_genomes_project 3 93496115 93550660 - MGP_C57BL6NJ_P0062362 Il6ra protein_coding protein_coding MGP_C57BL6NJ_T0099381.1 MGP_C57BL6NJ_G0037439.1 mouse_genomes_project 3 82400686 82404184 - Gm26984 sense_intronic sense_intronic MGP_C57BL6NJ_T0062625.1 MGP_C57BL6NJ_G0027955.1 mouse_genomes_project 3 97719359 97720472 - MGP_C57BL6NJ_P0062625 protein_coding protein_coding MGP_C57BL6NJ_T0062830.1 MGP_C57BL6NJ_G0027998.1 mouse_genomes_project 3 99527521 99561825 - MGP_C57BL6NJ_P0062830 Prune protein_coding protein_coding MGP_C57BL6NJ_T0062831.1 MGP_C57BL6NJ_G0027998.1 mouse_genomes_project 3 99540494 99544281 - Prune protein_coding retained_intron MGP_C57BL6NJ_T0063026.1 MGP_C57BL6NJ_G0028040.1 mouse_genomes_project 3 101031719 101034833 + MGP_C57BL6NJ_P0063026 Ankrd34a protein_coding protein_coding MGP_C57BL6NJ_T0010757.1 MGP_C57BL6NJ_G0008842.1 mouse_genomes_project 3 85013255 85013318 - Mir7010 miRNA miRNA MGP_C57BL6NJ_T0062077.1 MGP_C57BL6NJ_G0027820.1 mouse_genomes_project 3 92019390 92020666 - Lamtor2 protein_coding retained_intron MGP_C57BL6NJ_T0062078.1 MGP_C57BL6NJ_G0027820.1 mouse_genomes_project 3 92019390 92022596 - MGP_C57BL6NJ_P0062078 Lamtor2 protein_coding protein_coding MGP_C57BL6NJ_T0062079.1 MGP_C57BL6NJ_G0027820.1 mouse_genomes_project 3 92019391 92022431 - MGP_C57BL6NJ_P0062079 Lamtor2 protein_coding protein_coding MGP_C57BL6NJ_T0062080.1 MGP_C57BL6NJ_G0027820.1 mouse_genomes_project 3 92019392 92022465 - Lamtor2 protein_coding processed_transcript MGP_C57BL6NJ_T0062081.1 MGP_C57BL6NJ_G0027820.1 mouse_genomes_project 3 92021801 92022646 - Lamtor2 protein_coding retained_intron MGP_C57BL6NJ_T0062007.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735452 91741765 + MGP_C57BL6NJ_P0062007 Glmp protein_coding protein_coding MGP_C57BL6NJ_T0062008.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735484 91739941 + Glmp protein_coding retained_intron MGP_C57BL6NJ_T0062009.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735487 91737008 + Glmp protein_coding retained_intron MGP_C57BL6NJ_T0062010.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735489 91738017 + Glmp protein_coding retained_intron MGP_C57BL6NJ_T0062011.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735501 91736897 + MGP_C57BL6NJ_P0062011 Glmp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062012.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735511 91738798 + MGP_C57BL6NJ_P0062012 Glmp protein_coding protein_coding MGP_C57BL6NJ_T0062013.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735511 91738793 + MGP_C57BL6NJ_P0062013 Glmp protein_coding protein_coding MGP_C57BL6NJ_T0062014.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91735511 91738798 + MGP_C57BL6NJ_P0062014 Glmp protein_coding protein_coding MGP_C57BL6NJ_T0062015.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91736473 91738748 + Glmp protein_coding retained_intron MGP_C57BL6NJ_T0062016.1 MGP_C57BL6NJ_G0027808.1 mouse_genomes_project 3 91738502 91739011 + MGP_C57BL6NJ_P0062016 Glmp protein_coding protein_coding MGP_C57BL6NJ_T0007924.1 MGP_C57BL6NJ_G0006482.1 mouse_genomes_project 3 152466496 152502637 - Gm42709 lincRNA lincRNA MGP_C57BL6NJ_T0007853.1 MGP_C57BL6NJ_G0006422.1 mouse_genomes_project 3 128327966 128336513 - A730020M07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007854.1 MGP_C57BL6NJ_G0006422.1 mouse_genomes_project 3 128330156 128336516 - A730020M07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007855.1 MGP_C57BL6NJ_G0006422.1 mouse_genomes_project 3 128330158 128336398 - A730020M07Rik lincRNA lincRNA MGP_C57BL6NJ_T0004422.1 MGP_C57BL6NJ_G0003880.1 mouse_genomes_project 3 90049892 90060487 - Gm37876 antisense antisense MGP_C57BL6NJ_T0063265.1 MGP_C57BL6NJ_G0028101.1 mouse_genomes_project 3 108052980 108077109 - MGP_C57BL6NJ_P0063265 Nr1h5 protein_coding protein_coding MGP_C57BL6NJ_T0063266.1 MGP_C57BL6NJ_G0028101.1 mouse_genomes_project 3 108054192 108071487 - MGP_C57BL6NJ_P0063266 Nr1h5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063267.1 MGP_C57BL6NJ_G0028101.1 mouse_genomes_project 3 108054192 108071487 - MGP_C57BL6NJ_P0063267 Nr1h5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063268.1 MGP_C57BL6NJ_G0028101.1 mouse_genomes_project 3 108054192 108071487 - MGP_C57BL6NJ_P0063268 Nr1h5 protein_coding protein_coding MGP_C57BL6NJ_T0063269.1 MGP_C57BL6NJ_G0028101.1 mouse_genomes_project 3 108054192 108071487 - MGP_C57BL6NJ_P0063269 Nr1h5 protein_coding protein_coding MGP_C57BL6NJ_T0103073.1 MGP_C57BL6NJ_G0040867.1 mouse_genomes_project 3 65577004 65599459 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103101.1 MGP_C57BL6NJ_G0040895.1 mouse_genomes_project 3 98315362 98315744 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018455.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122080915 122088275 - A930005H10Rik processed_transcript antisense MGP_C57BL6NJ_T0018456.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122080915 122088239 - A930005H10Rik processed_transcript antisense MGP_C57BL6NJ_T0018457.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122080917 122088097 - A930005H10Rik processed_transcript antisense MGP_C57BL6NJ_T0018458.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122081120 122088249 - A930005H10Rik processed_transcript antisense MGP_C57BL6NJ_T0018459.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122086110 122088242 - A930005H10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018460.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122086209 122088032 - A930005H10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018461.1 MGP_C57BL6NJ_G0015913.1 mouse_genomes_project 3 122087966 122088275 - A930005H10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0061357.1 MGP_C57BL6NJ_G0027652.1 mouse_genomes_project 3 58747504 58753689 - MGP_C57BL6NJ_P0061357 Pfn2 protein_coding protein_coding MGP_C57BL6NJ_T0061358.1 MGP_C57BL6NJ_G0027652.1 mouse_genomes_project 3 58747514 58752755 - MGP_C57BL6NJ_P0061358 Pfn2 protein_coding protein_coding MGP_C57BL6NJ_T0061359.1 MGP_C57BL6NJ_G0027652.1 mouse_genomes_project 3 58748717 58751488 - MGP_C57BL6NJ_P0061359 Pfn2 protein_coding protein_coding MGP_C57BL6NJ_T0061360.1 MGP_C57BL6NJ_G0027652.1 mouse_genomes_project 3 58750270 58753159 - MGP_C57BL6NJ_P0061360 Pfn2 protein_coding protein_coding MGP_C57BL6NJ_T0018485.1 MGP_C57BL6NJ_G0015922.1 mouse_genomes_project 3 157741634 157743582 + Gm43572 processed_transcript processed_transcript MGP_C57BL6NJ_T0014681.1 MGP_C57BL6NJ_G0012726.1 mouse_genomes_project 3 144117901 144119406 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063848.1 MGP_C57BL6NJ_G0028232.1 mouse_genomes_project 3 122900270 122940281 - MGP_C57BL6NJ_P0063848 Gm43191 protein_coding protein_coding MGP_C57BL6NJ_T0099414.1 MGP_C57BL6NJ_G0037471.1 mouse_genomes_project 3 109331089 109332701 - Gm42699 sense_intronic sense_intronic MGP_C57BL6NJ_T0014460.1 MGP_C57BL6NJ_G0012505.1 mouse_genomes_project 3 73463130 73463587 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001395.1 MGP_C57BL6NJ_G0001296.1 mouse_genomes_project 3 97729873 97733829 + TEC TEC MGP_C57BL6NJ_T0007761.1 MGP_C57BL6NJ_G0006352.1 mouse_genomes_project 3 84686689 84689848 + A830029E22Rik lincRNA lincRNA MGP_C57BL6NJ_T0061442.1 MGP_C57BL6NJ_G0027674.1 mouse_genomes_project 3 62230382 62236570 + MGP_C57BL6NJ_P0061442 P2ry1 protein_coding protein_coding MGP_C57BL6NJ_T0061443.1 MGP_C57BL6NJ_G0027674.1 mouse_genomes_project 3 62230382 62236567 + MGP_C57BL6NJ_P0061443 P2ry1 protein_coding protein_coding MGP_C57BL6NJ_T0061444.1 MGP_C57BL6NJ_G0027674.1 mouse_genomes_project 3 62230386 62232589 + MGP_C57BL6NJ_P0061444 P2ry1 protein_coding protein_coding MGP_C57BL6NJ_T0100252.1 MGP_C57BL6NJ_G0038298.1 mouse_genomes_project 3 54504903 54505006 + Gm24851 snRNA snRNA MGP_C57BL6NJ_T0062713.1 MGP_C57BL6NJ_G0027979.1 mouse_genomes_project 3 99103391 99106260 - MGP_C57BL6NJ_P0062713 Psmb4 protein_coding protein_coding MGP_C57BL6NJ_T0062714.1 MGP_C57BL6NJ_G0027979.1 mouse_genomes_project 3 99103620 99104142 - Psmb4 protein_coding retained_intron MGP_C57BL6NJ_T0062715.1 MGP_C57BL6NJ_G0027979.1 mouse_genomes_project 3 99104196 99106161 - Psmb4 protein_coding retained_intron MGP_C57BL6NJ_T0062716.1 MGP_C57BL6NJ_G0027979.1 mouse_genomes_project 3 99104215 99106044 - Psmb4 protein_coding retained_intron MGP_C57BL6NJ_T0062717.1 MGP_C57BL6NJ_G0027979.1 mouse_genomes_project 3 99104605 99105254 - Psmb4 protein_coding retained_intron MGP_C57BL6NJ_T0001270.1 MGP_C57BL6NJ_G0001173.1 mouse_genomes_project 3 32240808 32243246 - TEC TEC MGP_C57BL6NJ_T0063436.1 MGP_C57BL6NJ_G0028133.1 mouse_genomes_project 3 110813720 111046547 + MGP_C57BL6NJ_P0063436 Kcnd3 protein_coding protein_coding MGP_C57BL6NJ_T0063437.1 MGP_C57BL6NJ_G0028133.1 mouse_genomes_project 3 110813963 111040134 + Kcnd3 protein_coding retained_intron MGP_C57BL6NJ_T0063438.1 MGP_C57BL6NJ_G0028133.1 mouse_genomes_project 3 110814476 111042005 + MGP_C57BL6NJ_P0063438 Kcnd3 protein_coding protein_coding MGP_C57BL6NJ_T0063439.1 MGP_C57BL6NJ_G0028133.1 mouse_genomes_project 3 110820172 111041854 + MGP_C57BL6NJ_P0063439 Kcnd3 protein_coding protein_coding MGP_C57BL6NJ_T0063440.1 MGP_C57BL6NJ_G0028133.1 mouse_genomes_project 3 111041549 111042389 + Kcnd3 protein_coding processed_transcript MGP_C57BL6NJ_T0100242.1 MGP_C57BL6NJ_G0038288.1 mouse_genomes_project 3 23038764 23038871 + Gm24704 snRNA snRNA MGP_C57BL6NJ_T0007815.1 MGP_C57BL6NJ_G0006393.1 mouse_genomes_project 3 107298467 107495791 + A230001M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0007816.1 MGP_C57BL6NJ_G0006393.1 mouse_genomes_project 3 107298584 107326148 + A230001M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0007817.1 MGP_C57BL6NJ_G0006393.1 mouse_genomes_project 3 107298901 107325353 + A230001M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0064856.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017064 163022089 - MGP_C57BL6NJ_P0064856 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064857.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017066 163021923 - MGP_C57BL6NJ_P0064857 Rabggtb protein_coding protein_coding MGP_C57BL6NJ_T0064858.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017066 163022787 - MGP_C57BL6NJ_P0064858 Rabggtb protein_coding protein_coding MGP_C57BL6NJ_T0064859.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017068 163022705 - MGP_C57BL6NJ_P0064859 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064860.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017070 163022771 - MGP_C57BL6NJ_P0064860 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064861.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017231 163021859 - MGP_C57BL6NJ_P0064861 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064862.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017349 163021859 - MGP_C57BL6NJ_P0064862 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064863.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017349 163021859 - MGP_C57BL6NJ_P0064863 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064864.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017349 163021859 - MGP_C57BL6NJ_P0064864 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064865.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163017852 163021811 - MGP_C57BL6NJ_P0064865 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064866.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163019191 163022733 - MGP_C57BL6NJ_P0064866 Rabggtb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064867.1 MGP_C57BL6NJ_G0028413.1 mouse_genomes_project 3 163021763 163022709 - Rabggtb protein_coding processed_transcript MGP_C57BL6NJ_T0007958.1 MGP_C57BL6NJ_G0006506.1 mouse_genomes_project 3 165874004 165889973 - 4930570G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007959.1 MGP_C57BL6NJ_G0006506.1 mouse_genomes_project 3 165874012 165889868 - 4930570G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007960.1 MGP_C57BL6NJ_G0006506.1 mouse_genomes_project 3 165875666 165889961 - 4930570G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007961.1 MGP_C57BL6NJ_G0006506.1 mouse_genomes_project 3 165887078 165890032 - 4930570G19Rik lincRNA lincRNA MGP_C57BL6NJ_T0001264.1 MGP_C57BL6NJ_G0001167.1 mouse_genomes_project 3 29979499 29979809 - TEC TEC MGP_C57BL6NJ_T0007768.1 MGP_C57BL6NJ_G0006358.1 mouse_genomes_project 3 86526544 86557007 - lincRNA lincRNA MGP_C57BL6NJ_T0100275.1 MGP_C57BL6NJ_G0038321.1 mouse_genomes_project 3 89636908 89637015 + Gm25039 snRNA snRNA MGP_C57BL6NJ_T0062257.1 MGP_C57BL6NJ_G0027844.1 mouse_genomes_project 3 92822195 92835984 - MGP_C57BL6NJ_P0062257 Trim46 protein_coding protein_coding MGP_C57BL6NJ_T0062258.1 MGP_C57BL6NJ_G0027844.1 mouse_genomes_project 3 92822200 92836112 - MGP_C57BL6NJ_P0062258 Trim46 protein_coding protein_coding MGP_C57BL6NJ_T0062259.1 MGP_C57BL6NJ_G0027844.1 mouse_genomes_project 3 92822858 92829666 - Trim46 protein_coding processed_transcript MGP_C57BL6NJ_T0062260.1 MGP_C57BL6NJ_G0027844.1 mouse_genomes_project 3 92822891 92836087 - MGP_C57BL6NJ_P0062260 Trim46 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062261.1 MGP_C57BL6NJ_G0027844.1 mouse_genomes_project 3 92834611 92836524 - MGP_C57BL6NJ_P0062261 Trim46 protein_coding protein_coding MGP_C57BL6NJ_T0062341.1 MGP_C57BL6NJ_G0027861.1 mouse_genomes_project 3 93066919 93076197 + MGP_C57BL6NJ_P0062341 Pmvk protein_coding protein_coding MGP_C57BL6NJ_T0062342.1 MGP_C57BL6NJ_G0027861.1 mouse_genomes_project 3 93066958 93076209 + MGP_C57BL6NJ_P0062342 Pmvk protein_coding protein_coding MGP_C57BL6NJ_T0062343.1 MGP_C57BL6NJ_G0027861.1 mouse_genomes_project 3 93067159 93076199 + MGP_C57BL6NJ_P0062343 Pmvk protein_coding protein_coding MGP_C57BL6NJ_T0004401.1 MGP_C57BL6NJ_G0003864.1 mouse_genomes_project 3 60370179 60377369 + Gm38186 antisense antisense MGP_C57BL6NJ_T0010746.1 MGP_C57BL6NJ_G0008831.1 mouse_genomes_project 3 35922294 35922358 - Mir7009 miRNA miRNA MGP_C57BL6NJ_T0007684.1 MGP_C57BL6NJ_G0006295.1 mouse_genomes_project 3 37619939 37649126 - Gm43821 lincRNA lincRNA MGP_C57BL6NJ_T0014575.1 MGP_C57BL6NJ_G0012620.1 mouse_genomes_project 3 109094323 109094788 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099402.1 MGP_C57BL6NJ_G0037459.1 mouse_genomes_project 3 107163028 107165910 + 4632404M16Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0014247.1 MGP_C57BL6NJ_G0012292.1 mouse_genomes_project 3 7212225 7212608 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007671.1 MGP_C57BL6NJ_G0006286.1 mouse_genomes_project 3 34602020 34622478 - Gm43003 lincRNA lincRNA MGP_C57BL6NJ_T0063007.1 MGP_C57BL6NJ_G0028030.1 mouse_genomes_project 3 100589346 100591966 + MGP_C57BL6NJ_P0063007 Hist2h2be protein_coding protein_coding MGP_C57BL6NJ_T0014538.1 MGP_C57BL6NJ_G0012583.1 mouse_genomes_project 3 100128218 100129113 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064975.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167558252 167838759 - MGP_C57BL6NJ_P0064975 Lrrc7 protein_coding protein_coding MGP_C57BL6NJ_T0064976.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167558256 168057599 - MGP_C57BL6NJ_P0064976 Lrrc7 protein_coding protein_coding MGP_C57BL6NJ_T0064977.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167559800 167844432 - MGP_C57BL6NJ_P0064977 Lrrc7 protein_coding protein_coding MGP_C57BL6NJ_T0064978.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167559800 168057599 - MGP_C57BL6NJ_P0064978 Lrrc7 protein_coding protein_coding MGP_C57BL6NJ_T0064979.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167901081 168056723 - Lrrc7 protein_coding retained_intron MGP_C57BL6NJ_T0064980.1 MGP_C57BL6NJ_G0028430.1 mouse_genomes_project 3 167938041 168056714 - Lrrc7 protein_coding retained_intron MGP_C57BL6NJ_T0100287.1 MGP_C57BL6NJ_G0038333.1 mouse_genomes_project 3 99139623 99139725 - Gm26279 snRNA snRNA MGP_C57BL6NJ_T0007893.1 MGP_C57BL6NJ_G0006455.1 mouse_genomes_project 3 144781979 144784283 - Gm43356 lincRNA lincRNA MGP_C57BL6NJ_T0001527.1 MGP_C57BL6NJ_G0001427.1 mouse_genomes_project 3 166055419 166056747 + TEC TEC MGP_C57BL6NJ_T0063027.1 MGP_C57BL6NJ_G0028041.1 mouse_genomes_project 3 101036206 101066845 + MGP_C57BL6NJ_P0063027 Lix1l protein_coding protein_coding MGP_C57BL6NJ_T0063028.1 MGP_C57BL6NJ_G0028041.1 mouse_genomes_project 3 101057772 101062902 + Lix1l protein_coding retained_intron MGP_C57BL6NJ_T0014456.1 MGP_C57BL6NJ_G0012501.1 mouse_genomes_project 3 71842639 71842828 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007694.1 MGP_C57BL6NJ_G0006302.1 mouse_genomes_project 3 40918156 40922686 - Gm16508 lincRNA lincRNA MGP_C57BL6NJ_T0014569.1 MGP_C57BL6NJ_G0012614.1 mouse_genomes_project 3 107757818 107757945 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061814.1 MGP_C57BL6NJ_G0027763.1 mouse_genomes_project 3 87566811 89093232 - MGP_C57BL6NJ_P0061814 Gm37240 protein_coding protein_coding MGP_C57BL6NJ_T0061836.1 MGP_C57BL6NJ_G0027763.1 mouse_genomes_project 3 89003694 89093234 - Gm37240 protein_coding processed_transcript MGP_C57BL6NJ_T0061837.1 MGP_C57BL6NJ_G0027763.1 mouse_genomes_project 3 89019753 89093084 - Gm37240 protein_coding retained_intron MGP_C57BL6NJ_T0063155.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103456188 103507249 - MGP_C57BL6NJ_P0063155 Hsd3b3 protein_coding protein_coding MGP_C57BL6NJ_T0063156.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103456189 103465361 - MGP_C57BL6NJ_P0063156 Hsd3b3 protein_coding protein_coding MGP_C57BL6NJ_T0063157.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103456189 103465361 - MGP_C57BL6NJ_P0063157 Hsd3b3 protein_coding protein_coding MGP_C57BL6NJ_T0063158.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103456189 103507195 - MGP_C57BL6NJ_P0063158 Hsd3b3 protein_coding protein_coding MGP_C57BL6NJ_T0063159.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103457101 103477170 - MGP_C57BL6NJ_P0063159 Hsd3b3 protein_coding protein_coding MGP_C57BL6NJ_T0063160.1 MGP_C57BL6NJ_G0028073.1 mouse_genomes_project 3 103472444 103507234 - Hsd3b3 protein_coding processed_transcript MGP_C57BL6NJ_T0060523.1 MGP_C57BL6NJ_G0027494.1 mouse_genomes_project 3 12696473 12755539 - MGP_C57BL6NJ_P0060523 Car1 protein_coding protein_coding MGP_C57BL6NJ_T0060524.1 MGP_C57BL6NJ_G0027494.1 mouse_genomes_project 3 12696474 12720243 - MGP_C57BL6NJ_P0060524 Car1 protein_coding protein_coding MGP_C57BL6NJ_T0004420.1 MGP_C57BL6NJ_G0003878.1 mouse_genomes_project 3 86775763 86791856 - Gm26771 antisense antisense MGP_C57BL6NJ_T0061536.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68590579 69007541 + MGP_C57BL6NJ_P0061536 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061537.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596526 68611859 + MGP_C57BL6NJ_P0061537 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061538.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596528 69009377 + MGP_C57BL6NJ_P0061538 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061539.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596541 68710392 + Rsrc1 protein_coding retained_intron MGP_C57BL6NJ_T0061540.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596541 69003617 + MGP_C57BL6NJ_P0061540 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061541.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596559 69009372 + MGP_C57BL6NJ_P0061541 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061542.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596560 69007540 + MGP_C57BL6NJ_P0061542 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061543.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596823 69009378 + MGP_C57BL6NJ_P0061543 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061544.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68596834 68610097 + MGP_C57BL6NJ_P0061544 Rsrc1 protein_coding protein_coding MGP_C57BL6NJ_T0061545.1 MGP_C57BL6NJ_G0027697.1 mouse_genomes_project 3 68606381 68610278 + Rsrc1 protein_coding retained_intron MGP_C57BL6NJ_T0101630.1 MGP_C57BL6NJ_G0039676.1 mouse_genomes_project 3 166592864 166592996 + Gm24373 snoRNA snoRNA MGP_C57BL6NJ_T0014331.1 MGP_C57BL6NJ_G0012376.1 mouse_genomes_project 3 36812370 36812689 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063317.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108421680 108512756 + MGP_C57BL6NJ_P0063317 Trim33 protein_coding protein_coding MGP_C57BL6NJ_T0063318.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108422266 108509543 + MGP_C57BL6NJ_P0063318 Trim33 protein_coding protein_coding MGP_C57BL6NJ_T0063319.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108461704 108479415 + MGP_C57BL6NJ_P0063319 Trim33 protein_coding protein_coding MGP_C57BL6NJ_T0063320.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108471718 108476684 + Trim33 protein_coding retained_intron MGP_C57BL6NJ_T0063321.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108476341 108477693 + Trim33 protein_coding retained_intron MGP_C57BL6NJ_T0063322.1 MGP_C57BL6NJ_G0028108.1 mouse_genomes_project 3 108476433 108505198 + MGP_C57BL6NJ_P0063322 Trim33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014633.1 MGP_C57BL6NJ_G0012678.1 mouse_genomes_project 3 128518925 128519331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001347.1 MGP_C57BL6NJ_G0001248.1 mouse_genomes_project 3 56266477 56269870 + TEC TEC MGP_C57BL6NJ_T0010768.1 MGP_C57BL6NJ_G0008853.1 mouse_genomes_project 3 95957847 95957957 - Gm23697 miRNA miRNA MGP_C57BL6NJ_T0062957.1 MGP_C57BL6NJ_G0028018.1 mouse_genomes_project 3 100221494 100229201 + MGP_C57BL6NJ_P0062957 Aph1a protein_coding protein_coding MGP_C57BL6NJ_T0062958.1 MGP_C57BL6NJ_G0028018.1 mouse_genomes_project 3 100221558 100222517 + MGP_C57BL6NJ_P0062958 Aph1a protein_coding protein_coding MGP_C57BL6NJ_T0062959.1 MGP_C57BL6NJ_G0028018.1 mouse_genomes_project 3 100221580 100228358 + MGP_C57BL6NJ_P0062959 Aph1a protein_coding protein_coding MGP_C57BL6NJ_T0062960.1 MGP_C57BL6NJ_G0028018.1 mouse_genomes_project 3 100221990 100228745 + Aph1a protein_coding retained_intron MGP_C57BL6NJ_T0100270.1 MGP_C57BL6NJ_G0038316.1 mouse_genomes_project 3 89115280 89115387 - Gm26204 snRNA snRNA MGP_C57BL6NJ_T0004552.1 MGP_C57BL6NJ_G0003965.1 mouse_genomes_project 3 153420743 153427952 + Gm16233 antisense antisense MGP_C57BL6NJ_T0063225.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106874483 106938267 - MGP_C57BL6NJ_P0063225 Slc22a15 protein_coding protein_coding MGP_C57BL6NJ_T0063226.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106879318 106938323 - MGP_C57BL6NJ_P0063226 Slc22a15 protein_coding protein_coding MGP_C57BL6NJ_T0063227.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106879342 106911041 - Slc22a15 protein_coding processed_transcript MGP_C57BL6NJ_T0063228.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106882891 106898276 - Slc22a15 protein_coding retained_intron MGP_C57BL6NJ_T0063229.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106884129 106938253 - MGP_C57BL6NJ_P0063229 Slc22a15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063230.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106892037 106897003 - Slc22a15 protein_coding retained_intron MGP_C57BL6NJ_T0063231.1 MGP_C57BL6NJ_G0028093.1 mouse_genomes_project 3 106934888 106938327 - Slc22a15 protein_coding processed_transcript MGP_C57BL6NJ_T0060583.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241815 18300912 + MGP_C57BL6NJ_P0060583 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060584.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241815 18283863 + MGP_C57BL6NJ_P0060584 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060585.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241822 18258676 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060586.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241830 18302448 + MGP_C57BL6NJ_P0060586 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060587.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241872 18300912 + MGP_C57BL6NJ_P0060587 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060588.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18241980 18258344 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060589.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18242045 18283250 + MGP_C57BL6NJ_P0060589 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060590.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18259180 18279782 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060591.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18260223 18264392 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060592.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18264098 18271458 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060593.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18271344 18278113 + MGP_C57BL6NJ_P0060593 Cp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060594.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18272144 18274204 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060595.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18272719 18276620 + MGP_C57BL6NJ_P0060595 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060596.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18276328 18283307 + MGP_C57BL6NJ_P0060596 Cp protein_coding protein_coding MGP_C57BL6NJ_T0060597.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18278261 18280344 + Cp protein_coding retained_intron MGP_C57BL6NJ_T0060598.1 MGP_C57BL6NJ_G0027514.1 mouse_genomes_project 3 18279868 18299661 + MGP_C57BL6NJ_P0060598 Cp protein_coding protein_coding MGP_C57BL6NJ_T0099266.1 MGP_C57BL6NJ_G0037330.1 mouse_genomes_project 3 114218254 114218668 - Scarna2 scaRNA scaRNA MGP_C57BL6NJ_T0004448.1 MGP_C57BL6NJ_G0003899.1 mouse_genomes_project 3 99588402 99596314 - 6330562C20Rik antisense antisense MGP_C57BL6NJ_T0004449.1 MGP_C57BL6NJ_G0003899.1 mouse_genomes_project 3 99588988 99596363 - 6330562C20Rik antisense antisense MGP_C57BL6NJ_T0004450.1 MGP_C57BL6NJ_G0003899.1 mouse_genomes_project 3 99592623 99596373 - 6330562C20Rik antisense antisense MGP_C57BL6NJ_T0007641.1 MGP_C57BL6NJ_G0006259.1 mouse_genomes_project 3 16686180 16698371 - 4930433B08Rik lincRNA lincRNA MGP_C57BL6NJ_T0060741.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29596860 29617614 + MGP_C57BL6NJ_P0060741 Mynn protein_coding protein_coding MGP_C57BL6NJ_T0060742.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29597426 29617614 + MGP_C57BL6NJ_P0060742 Mynn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060743.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29597432 29616158 + MGP_C57BL6NJ_P0060743 Mynn protein_coding protein_coding MGP_C57BL6NJ_T0060744.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29597434 29598956 + Mynn protein_coding retained_intron MGP_C57BL6NJ_T0060745.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29597439 29616291 + MGP_C57BL6NJ_P0060745 Mynn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060746.1 MGP_C57BL6NJ_G0027540.1 mouse_genomes_project 3 29611344 29614585 + Mynn protein_coding retained_intron MGP_C57BL6NJ_T0062930.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100081207 100142081 - MGP_C57BL6NJ_P0062930 Rprd2 protein_coding protein_coding MGP_C57BL6NJ_T0062931.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100084546 100142074 - MGP_C57BL6NJ_P0062931 Rprd2 protein_coding protein_coding MGP_C57BL6NJ_T0062932.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100091405 100097629 - Rprd2 protein_coding retained_intron MGP_C57BL6NJ_T0062933.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100093103 100142101 - MGP_C57BL6NJ_P0062933 Rprd2 protein_coding protein_coding MGP_C57BL6NJ_T0062934.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100093918 100097607 - Rprd2 protein_coding processed_transcript MGP_C57BL6NJ_T0062935.1 MGP_C57BL6NJ_G0028013.1 mouse_genomes_project 3 100104669 100142186 - Rprd2 protein_coding retained_intron MGP_C57BL6NJ_T0103118.1 MGP_C57BL6NJ_G0040912.1 mouse_genomes_project 3 113559112 113565760 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0061064.1 MGP_C57BL6NJ_G0027599.1 mouse_genomes_project 3 40374201 40441052 - MGP_C57BL6NJ_P0061064 Mfsd8 protein_coding protein_coding MGP_C57BL6NJ_T0061065.1 MGP_C57BL6NJ_G0027599.1 mouse_genomes_project 3 40375606 40440969 - MGP_C57BL6NJ_P0061065 Mfsd8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061066.1 MGP_C57BL6NJ_G0027599.1 mouse_genomes_project 3 40397191 40400706 - Mfsd8 protein_coding retained_intron MGP_C57BL6NJ_T0061067.1 MGP_C57BL6NJ_G0027599.1 mouse_genomes_project 3 40431149 40440983 - MGP_C57BL6NJ_P0061067 Mfsd8 protein_coding protein_coding MGP_C57BL6NJ_T0064713.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157542817 157555783 - MGP_C57BL6NJ_P0064713 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064714.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157542820 157689245 - MGP_C57BL6NJ_P0064714 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064715.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543085 157689202 - MGP_C57BL6NJ_P0064715 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064716.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543089 157551006 - MGP_C57BL6NJ_P0064716 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064717.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543090 157550214 - MGP_C57BL6NJ_P0064717 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064718.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543310 157689225 - MGP_C57BL6NJ_P0064718 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064719.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543327 157725137 - MGP_C57BL6NJ_P0064719 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064720.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157543327 157725137 - MGP_C57BL6NJ_P0064720 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064721.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544174 157689341 - MGP_C57BL6NJ_P0064721 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064722.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544327 157689354 - MGP_C57BL6NJ_P0064722 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064723.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544327 157689354 - MGP_C57BL6NJ_P0064723 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064724.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544327 157689354 - MGP_C57BL6NJ_P0064724 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064725.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544956 157561162 - MGP_C57BL6NJ_P0064725 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064726.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544979 157563332 - MGP_C57BL6NJ_P0064726 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064727.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157544998 157553631 - MGP_C57BL6NJ_P0064727 Adgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0064728.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157547554 157552409 - Adgrl2 protein_coding retained_intron MGP_C57BL6NJ_T0064729.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157554406 157563466 - Adgrl2 protein_coding retained_intron MGP_C57BL6NJ_T0064730.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157622421 157723898 - Adgrl2 protein_coding retained_intron MGP_C57BL6NJ_T0064731.1 MGP_C57BL6NJ_G0028395.1 mouse_genomes_project 3 157688526 157724064 - Adgrl2 protein_coding retained_intron MGP_C57BL6NJ_T0014414.1 MGP_C57BL6NJ_G0012459.1 mouse_genomes_project 3 61974303 61974872 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061302.1 MGP_C57BL6NJ_G0027641.1 mouse_genomes_project 3 55971503 55995217 + MGP_C57BL6NJ_P0061302 Sohlh2 protein_coding protein_coding MGP_C57BL6NJ_T0007672.1 MGP_C57BL6NJ_G0006287.1 mouse_genomes_project 3 34966097 35046156 - Gm6639 lincRNA lincRNA MGP_C57BL6NJ_T0007673.1 MGP_C57BL6NJ_G0006287.1 mouse_genomes_project 3 34988133 35046004 - Gm6639 lincRNA lincRNA MGP_C57BL6NJ_T0007674.1 MGP_C57BL6NJ_G0006287.1 mouse_genomes_project 3 34988324 35002506 - Gm6639 lincRNA lincRNA MGP_C57BL6NJ_T0007675.1 MGP_C57BL6NJ_G0006287.1 mouse_genomes_project 3 35000455 35011107 - Gm6639 lincRNA lincRNA MGP_C57BL6NJ_T0064162.1 MGP_C57BL6NJ_G0028285.1 mouse_genomes_project 3 136930381 137046029 + MGP_C57BL6NJ_P0064162 Elovl6 protein_coding protein_coding MGP_C57BL6NJ_T0064163.1 MGP_C57BL6NJ_G0028285.1 mouse_genomes_project 3 136930722 137040975 + MGP_C57BL6NJ_P0064163 Elovl6 protein_coding protein_coding MGP_C57BL6NJ_T0064164.1 MGP_C57BL6NJ_G0028285.1 mouse_genomes_project 3 136953210 137033460 + MGP_C57BL6NJ_P0064164 Elovl6 protein_coding protein_coding MGP_C57BL6NJ_T0061068.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40441136 40551126 + MGP_C57BL6NJ_P0061068 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061070.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490664 40554257 + MGP_C57BL6NJ_P0061070 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061071.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490782 40532982 + MGP_C57BL6NJ_P0061071 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061072.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490796 40554255 + MGP_C57BL6NJ_P0061072 Abhd18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061073.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490808 40532951 + MGP_C57BL6NJ_P0061073 Abhd18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061074.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490825 40539538 + MGP_C57BL6NJ_P0061074 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061075.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490841 40551956 + MGP_C57BL6NJ_P0061075 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061076.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490843 40551973 + MGP_C57BL6NJ_P0061076 Abhd18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061077.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40490864 40533307 + MGP_C57BL6NJ_P0061077 Abhd18 protein_coding protein_coding MGP_C57BL6NJ_T0061078.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40522358 40534938 + Abhd18 protein_coding retained_intron MGP_C57BL6NJ_T0061079.1 MGP_C57BL6NJ_G0027600.1 mouse_genomes_project 3 40545363 40551514 + Abhd18 protein_coding processed_transcript MGP_C57BL6NJ_T0062823.1 MGP_C57BL6NJ_G0027996.1 mouse_genomes_project 3 99510794 99515473 - MGP_C57BL6NJ_P0062823 Gm128 protein_coding protein_coding MGP_C57BL6NJ_T0062824.1 MGP_C57BL6NJ_G0027996.1 mouse_genomes_project 3 99510981 99515473 - MGP_C57BL6NJ_P0062824 Gm128 protein_coding protein_coding MGP_C57BL6NJ_T0064668.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 154998350 155011420 - MGP_C57BL6NJ_P0064668 Spata1 protein_coding protein_coding MGP_C57BL6NJ_T0064669.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 154998356 155037424 - MGP_C57BL6NJ_P0064669 Spata1 protein_coding protein_coding MGP_C57BL6NJ_T0064670.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 154998357 155043447 - MGP_C57BL6NJ_P0064670 Spata1 protein_coding protein_coding MGP_C57BL6NJ_T0064671.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 155007620 155017905 - MGP_C57BL6NJ_P0064671 Spata1 protein_coding protein_coding MGP_C57BL6NJ_T0064672.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 155011306 155026275 - Spata1 protein_coding processed_transcript MGP_C57BL6NJ_T0064673.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 155017039 155043403 - Spata1 protein_coding processed_transcript MGP_C57BL6NJ_T0064674.1 MGP_C57BL6NJ_G0028386.1 mouse_genomes_project 3 155028160 155038694 - MGP_C57BL6NJ_P0064674 Spata1 protein_coding protein_coding MGP_C57BL6NJ_T0014355.1 MGP_C57BL6NJ_G0012400.1 mouse_genomes_project 3 44433037 44433446 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004470.1 MGP_C57BL6NJ_G0003912.1 mouse_genomes_project 3 107233496 107235849 + Gm16160 antisense antisense MGP_C57BL6NJ_T0060747.1 MGP_C57BL6NJ_G0027541.1 mouse_genomes_project 3 29621935 29648178 - MGP_C57BL6NJ_P0060747 Lrrc34 protein_coding protein_coding MGP_C57BL6NJ_T0099405.1 MGP_C57BL6NJ_G0037462.1 mouse_genomes_project 3 108482396 108484637 + Gm43061 sense_intronic sense_intronic MGP_C57BL6NJ_T0001290.1 MGP_C57BL6NJ_G0001193.1 mouse_genomes_project 3 37351376 37352644 + TEC TEC MGP_C57BL6NJ_T0060468.1 MGP_C57BL6NJ_G0027476.1 mouse_genomes_project 3 7598486 7606353 + MGP_C57BL6NJ_P0060468 Fabp5 protein_coding protein_coding MGP_C57BL6NJ_T0060469.1 MGP_C57BL6NJ_G0027476.1 mouse_genomes_project 3 7598543 7606081 + Fabp5 protein_coding retained_intron MGP_C57BL6NJ_T0014397.1 MGP_C57BL6NJ_G0012442.1 mouse_genomes_project 3 58610455 58610932 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014489.1 MGP_C57BL6NJ_G0012534.1 mouse_genomes_project 3 84434241 84435026 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062699.1 MGP_C57BL6NJ_G0027977.1 mouse_genomes_project 3 98975518 99002175 - MGP_C57BL6NJ_P0062699 protein_coding protein_coding MGP_C57BL6NJ_T0062700.1 MGP_C57BL6NJ_G0027977.1 mouse_genomes_project 3 98975518 99002204 - MGP_C57BL6NJ_P0062700 protein_coding protein_coding MGP_C57BL6NJ_T0062701.1 MGP_C57BL6NJ_G0027977.1 mouse_genomes_project 3 98990881 99002179 - MGP_C57BL6NJ_P0062701 protein_coding protein_coding MGP_C57BL6NJ_T0062702.1 MGP_C57BL6NJ_G0027977.1 mouse_genomes_project 3 98990881 99002163 - MGP_C57BL6NJ_P0062702 protein_coding protein_coding MGP_C57BL6NJ_T0063444.1 MGP_C57BL6NJ_G0028135.1 mouse_genomes_project 3 111080873 111097141 + MGP_C57BL6NJ_P0063444 Fam212b protein_coding protein_coding MGP_C57BL6NJ_T0063445.1 MGP_C57BL6NJ_G0028135.1 mouse_genomes_project 3 111081750 111094451 + MGP_C57BL6NJ_P0063445 Fam212b protein_coding protein_coding MGP_C57BL6NJ_T0018462.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124839343 124842967 + Gm26871 processed_transcript lincRNA MGP_C57BL6NJ_T0018463.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124842804 124938462 + Gm26871 processed_transcript lincRNA MGP_C57BL6NJ_T0018464.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124842929 124940546 + Gm26871 processed_transcript lincRNA MGP_C57BL6NJ_T0018465.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124842940 124892411 + Gm26871 processed_transcript lincRNA MGP_C57BL6NJ_T0018466.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124842973 124953937 + Gm26871 processed_transcript lincRNA MGP_C57BL6NJ_T0018467.1 MGP_C57BL6NJ_G0015914.1 mouse_genomes_project 3 124876847 124879891 + Gm26871 processed_transcript retained_intron MGP_C57BL6NJ_T0061991.1 MGP_C57BL6NJ_G0027804.1 mouse_genomes_project 3 91641834 91653670 - MGP_C57BL6NJ_P0061991 Rhbg protein_coding protein_coding MGP_C57BL6NJ_T0062474.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 93996609 94076096 + MGP_C57BL6NJ_P0062474 Gatad2b protein_coding protein_coding MGP_C57BL6NJ_T0062475.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 93996615 94065557 + Gatad2b protein_coding retained_intron MGP_C57BL6NJ_T0062476.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 93997163 94071378 + MGP_C57BL6NJ_P0062476 Gatad2b protein_coding protein_coding MGP_C57BL6NJ_T0062477.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 94052588 94055042 + Gatad2b protein_coding retained_intron MGP_C57BL6NJ_T0062478.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 94053213 94071125 + MGP_C57BL6NJ_P0062478 Gatad2b protein_coding protein_coding MGP_C57BL6NJ_T0062479.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 94053215 94071118 + Gatad2b protein_coding retained_intron MGP_C57BL6NJ_T0062480.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 94053215 94071084 + MGP_C57BL6NJ_P0062480 Gatad2b protein_coding protein_coding MGP_C57BL6NJ_T0062481.1 MGP_C57BL6NJ_G0027880.1 mouse_genomes_project 3 94064422 94069139 + MGP_C57BL6NJ_P0062481 Gatad2b protein_coding protein_coding MGP_C57BL6NJ_T0060470.1 MGP_C57BL6NJ_G0027477.1 mouse_genomes_project 3 7782541 7786620 - MGP_C57BL6NJ_P0060470 Pmp2 protein_coding protein_coding MGP_C57BL6NJ_T0064446.1 MGP_C57BL6NJ_G0028340.1 mouse_genomes_project 3 146124087 146141459 + MGP_C57BL6NJ_P0064446 Adh7 protein_coding protein_coding MGP_C57BL6NJ_T0064447.1 MGP_C57BL6NJ_G0028340.1 mouse_genomes_project 3 146129552 146131169 + Adh7 protein_coding retained_intron MGP_C57BL6NJ_T0064448.1 MGP_C57BL6NJ_G0028340.1 mouse_genomes_project 3 146136127 146139508 + Adh7 protein_coding processed_transcript MGP_C57BL6NJ_T0014241.1 MGP_C57BL6NJ_G0012286.1 mouse_genomes_project 3 5868037 5868845 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063305.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108227990 108298278 + MGP_C57BL6NJ_P0063305 Dennd2c protein_coding protein_coding MGP_C57BL6NJ_T0063306.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108228046 108284565 + Dennd2c protein_coding retained_intron MGP_C57BL6NJ_T0063307.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108254716 108298247 + MGP_C57BL6NJ_P0063307 Dennd2c protein_coding protein_coding MGP_C57BL6NJ_T0063308.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108267722 108297173 + Dennd2c protein_coding processed_transcript MGP_C57BL6NJ_T0063309.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108268260 108298240 + Dennd2c protein_coding retained_intron MGP_C57BL6NJ_T0063310.1 MGP_C57BL6NJ_G0028106.1 mouse_genomes_project 3 108276456 108287061 + Dennd2c protein_coding retained_intron MGP_C57BL6NJ_T0001381.1 MGP_C57BL6NJ_G0001282.1 mouse_genomes_project 3 81074174 81077828 - TEC TEC MGP_C57BL6NJ_T0014599.1 MGP_C57BL6NJ_G0012644.1 mouse_genomes_project 3 116911275 116911592 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062621.1 MGP_C57BL6NJ_G0027953.1 mouse_genomes_project 3 97588736 97594558 + MGP_C57BL6NJ_P0062621 S100a11 protein_coding protein_coding MGP_C57BL6NJ_T0014657.1 MGP_C57BL6NJ_G0012702.1 mouse_genomes_project 3 137586189 137588555 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061080.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40567553 40597012 + MGP_C57BL6NJ_P0061080 Larp1b protein_coding protein_coding MGP_C57BL6NJ_T0061081.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40567991 40596476 + MGP_C57BL6NJ_P0061081 Larp1b protein_coding protein_coding MGP_C57BL6NJ_T0061082.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40568017 40581079 + MGP_C57BL6NJ_P0061082 Larp1b protein_coding protein_coding MGP_C57BL6NJ_T0061083.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40580482 40582886 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061084.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40581019 40596629 + MGP_C57BL6NJ_P0061084 Larp1b protein_coding protein_coding MGP_C57BL6NJ_T0061085.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40582831 40631067 + MGP_C57BL6NJ_P0061085 Larp1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061086.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40590481 40596223 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061087.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40629777 40658654 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061088.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40640416 40658710 + Larp1b protein_coding retained_intron MGP_C57BL6NJ_T0061089.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40642310 40658133 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061090.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40642988 40657569 + MGP_C57BL6NJ_P0061090 Larp1b protein_coding protein_coding MGP_C57BL6NJ_T0061091.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40651992 40652718 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061092.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40652011 40658674 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0061093.1 MGP_C57BL6NJ_G0027602.1 mouse_genomes_project 3 40655210 40657091 + Larp1b protein_coding processed_transcript MGP_C57BL6NJ_T0001404.1 MGP_C57BL6NJ_G0001305.1 mouse_genomes_project 3 101803154 101806442 + TEC TEC MGP_C57BL6NJ_T0060435.1 MGP_C57BL6NJ_G0027467.1 mouse_genomes_project 3 4870592 4928230 + MGP_C57BL6NJ_P0060435 Zc2hc1a protein_coding protein_coding MGP_C57BL6NJ_T0060436.1 MGP_C57BL6NJ_G0027467.1 mouse_genomes_project 3 4870595 4926469 + MGP_C57BL6NJ_P0060436 Zc2hc1a protein_coding protein_coding MGP_C57BL6NJ_T0060437.1 MGP_C57BL6NJ_G0027467.1 mouse_genomes_project 3 4910896 4925895 + Zc2hc1a protein_coding retained_intron MGP_C57BL6NJ_T0103100.1 MGP_C57BL6NJ_G0040894.1 mouse_genomes_project 3 98308778 98308968 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014468.1 MGP_C57BL6NJ_G0012513.1 mouse_genomes_project 3 76278036 76279113 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001282.1 MGP_C57BL6NJ_G0001185.1 mouse_genomes_project 3 35977990 35981100 - TEC TEC MGP_C57BL6NJ_T0099425.1 MGP_C57BL6NJ_G0037482.1 mouse_genomes_project 3 109919935 109922792 + Gm43581 sense_intronic sense_intronic MGP_C57BL6NJ_T0001417.1 MGP_C57BL6NJ_G0001318.1 mouse_genomes_project 3 113930354 113935577 + TEC TEC MGP_C57BL6NJ_T0064591.1 MGP_C57BL6NJ_G0028369.1 mouse_genomes_project 3 153425631 153460647 - MGP_C57BL6NJ_P0064591 Clca4a protein_coding protein_coding MGP_C57BL6NJ_T0001322.1 MGP_C57BL6NJ_G0001225.1 mouse_genomes_project 3 52078532 52079074 + TEC TEC MGP_C57BL6NJ_T0007809.1 MGP_C57BL6NJ_G0006387.1 mouse_genomes_project 3 105282268 105283573 + Gm43121 lincRNA lincRNA MGP_C57BL6NJ_T0062521.1 MGP_C57BL6NJ_G0027888.1 mouse_genomes_project 3 94241693 94253778 + MGP_C57BL6NJ_P0062521 S100a13 protein_coding protein_coding MGP_C57BL6NJ_T0014529.1 MGP_C57BL6NJ_G0012574.1 mouse_genomes_project 3 97598779 97599016 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014544.1 MGP_C57BL6NJ_G0012589.1 mouse_genomes_project 3 100879554 100880988 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061377.1 MGP_C57BL6NJ_G0027658.1 mouse_genomes_project 3 59657264 59674614 - MGP_C57BL6NJ_P0061377 Siah2 protein_coding protein_coding MGP_C57BL6NJ_T0061378.1 MGP_C57BL6NJ_G0027658.1 mouse_genomes_project 3 59658502 59668360 - Siah2 protein_coding processed_transcript MGP_C57BL6NJ_T0014679.1 MGP_C57BL6NJ_G0012724.1 mouse_genomes_project 3 143735791 143736091 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014281.1 MGP_C57BL6NJ_G0012326.1 mouse_genomes_project 3 16829290 16830314 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062653.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98596406 98598661 - protein_coding retained_intron MGP_C57BL6NJ_T0062654.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597158 98600611 - MGP_C57BL6NJ_P0062654 protein_coding protein_coding MGP_C57BL6NJ_T0062655.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597379 98607788 - MGP_C57BL6NJ_P0062655 protein_coding protein_coding MGP_C57BL6NJ_T0062656.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597379 98607706 - MGP_C57BL6NJ_P0062656 protein_coding protein_coding MGP_C57BL6NJ_T0062657.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597379 98599110 - MGP_C57BL6NJ_P0062657 protein_coding protein_coding MGP_C57BL6NJ_T0062658.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597379 98600562 - MGP_C57BL6NJ_P0062658 protein_coding protein_coding MGP_C57BL6NJ_T0062659.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98597379 98600632 - MGP_C57BL6NJ_P0062659 protein_coding protein_coding MGP_C57BL6NJ_T0062660.1 MGP_C57BL6NJ_G0027969.1 mouse_genomes_project 3 98599108 98600758 - protein_coding retained_intron MGP_C57BL6NJ_T0064762.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208449 161235919 + MGP_C57BL6NJ_P0064762 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064763.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208500 161218530 + MGP_C57BL6NJ_P0064763 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064764.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208509 161231865 + MGP_C57BL6NJ_P0064764 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064765.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208519 161222897 + MGP_C57BL6NJ_P0064765 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064766.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208525 161231864 + MGP_C57BL6NJ_P0064766 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064767.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208541 161217746 + MGP_C57BL6NJ_P0064767 Fubp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064768.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208546 161231864 + MGP_C57BL6NJ_P0064768 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064769.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208546 161234861 + MGP_C57BL6NJ_P0064769 Fubp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064770.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161208548 161235919 + MGP_C57BL6NJ_P0064770 Fubp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064771.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161215461 161216535 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0064772.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161219393 161222165 + MGP_C57BL6NJ_P0064772 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064773.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161219915 161221011 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0064774.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161221328 161231865 + MGP_C57BL6NJ_P0064774 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064775.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161221341 161231882 + MGP_C57BL6NJ_P0064775 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064776.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161221351 161234927 + MGP_C57BL6NJ_P0064776 Fubp1 protein_coding protein_coding MGP_C57BL6NJ_T0064777.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161222758 161234512 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0064778.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161223901 161226278 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0064779.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161225335 161230403 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0064780.1 MGP_C57BL6NJ_G0028402.1 mouse_genomes_project 3 161225871 161231601 + Fubp1 protein_coding retained_intron MGP_C57BL6NJ_T0103119.1 MGP_C57BL6NJ_G0040913.1 mouse_genomes_project 3 113651940 113654471 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0062599.1 MGP_C57BL6NJ_G0027939.1 mouse_genomes_project 3 96943345 96944289 - MGP_C57BL6NJ_P0062599 Lce3a protein_coding protein_coding MGP_C57BL6NJ_T0014625.1 MGP_C57BL6NJ_G0012670.1 mouse_genomes_project 3 124264752 124265194 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014510.1 MGP_C57BL6NJ_G0012555.1 mouse_genomes_project 3 94393791 94393944 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014494.1 MGP_C57BL6NJ_G0012539.1 mouse_genomes_project 3 87631816 87632714 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011815.1 MGP_C57BL6NJ_G0009900.1 mouse_genomes_project 3 164307946 164308057 + Gm26456 misc_RNA misc_RNA MGP_C57BL6NJ_T0060616.1 MGP_C57BL6NJ_G0027517.1 mouse_genomes_project 3 18447585 18481983 - MGP_C57BL6NJ_P0060616 Gyg protein_coding protein_coding MGP_C57BL6NJ_T0060617.1 MGP_C57BL6NJ_G0027517.1 mouse_genomes_project 3 18447588 18481762 - MGP_C57BL6NJ_P0060617 Gyg protein_coding protein_coding MGP_C57BL6NJ_T0060618.1 MGP_C57BL6NJ_G0027517.1 mouse_genomes_project 3 18447648 18481735 - MGP_C57BL6NJ_P0060618 Gyg protein_coding protein_coding MGP_C57BL6NJ_T0060619.1 MGP_C57BL6NJ_G0027517.1 mouse_genomes_project 3 18448057 18449045 - Gyg protein_coding retained_intron MGP_C57BL6NJ_T0001498.1 MGP_C57BL6NJ_G0001398.1 mouse_genomes_project 3 143626316 143628567 + TEC TEC MGP_C57BL6NJ_T0062278.1 MGP_C57BL6NJ_G0027848.1 mouse_genomes_project 3 92867094 92874906 - MGP_C57BL6NJ_P0062278 Efna1 protein_coding protein_coding MGP_C57BL6NJ_T0062279.1 MGP_C57BL6NJ_G0027848.1 mouse_genomes_project 3 92867103 92875005 - MGP_C57BL6NJ_P0062279 Efna1 protein_coding protein_coding MGP_C57BL6NJ_T0014601.1 MGP_C57BL6NJ_G0012646.1 mouse_genomes_project 3 117661961 117662355 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099411.1 MGP_C57BL6NJ_G0037468.1 mouse_genomes_project 3 109267797 109268939 - Gm42696 sense_intronic sense_intronic MGP_C57BL6NJ_T0004411.1 MGP_C57BL6NJ_G0003872.1 mouse_genomes_project 3 67540560 67544839 + Gm37305 antisense antisense MGP_C57BL6NJ_T0007868.1 MGP_C57BL6NJ_G0006433.1 mouse_genomes_project 3 135912162 136203627 + lincRNA lincRNA MGP_C57BL6NJ_T0004458.1 MGP_C57BL6NJ_G0003904.1 mouse_genomes_project 3 100985869 100989154 - Gm15441 antisense antisense MGP_C57BL6NJ_T0004459.1 MGP_C57BL6NJ_G0003904.1 mouse_genomes_project 3 100985892 100998140 - Gm15441 antisense antisense MGP_C57BL6NJ_T0001472.1 MGP_C57BL6NJ_G0001373.1 mouse_genomes_project 3 134926024 134928005 - TEC TEC MGP_C57BL6NJ_T0004571.1 MGP_C57BL6NJ_G0003979.1 mouse_genomes_project 3 167542446 167551373 - B230334C09Rik antisense antisense MGP_C57BL6NJ_T0001456.1 MGP_C57BL6NJ_G0001357.1 mouse_genomes_project 3 133772112 133772760 + TEC TEC MGP_C57BL6NJ_T0014698.1 MGP_C57BL6NJ_G0012743.1 mouse_genomes_project 3 148988251 148988792 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001296.1 MGP_C57BL6NJ_G0001199.1 mouse_genomes_project 3 40624204 40625127 - TEC TEC MGP_C57BL6NJ_T0007739.1 MGP_C57BL6NJ_G0006334.1 mouse_genomes_project 3 70504655 70506141 - 4930535E02Rik lincRNA lincRNA MGP_C57BL6NJ_T0014680.1 MGP_C57BL6NJ_G0012725.1 mouse_genomes_project 3 143822144 143824278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007650.1 MGP_C57BL6NJ_G0006267.1 mouse_genomes_project 3 21436678 21439689 + Gm37021 lincRNA lincRNA MGP_C57BL6NJ_T0007818.1 MGP_C57BL6NJ_G0006394.1 mouse_genomes_project 3 107422117 107423893 + Gm43242 lincRNA lincRNA MGP_C57BL6NJ_T0062519.1 MGP_C57BL6NJ_G0027887.1 mouse_genomes_project 3 94238292 94241651 - MGP_C57BL6NJ_P0062519 S100a1 protein_coding protein_coding MGP_C57BL6NJ_T0062520.1 MGP_C57BL6NJ_G0027887.1 mouse_genomes_project 3 94238295 94241537 - MGP_C57BL6NJ_P0062520 S100a1 protein_coding protein_coding MGP_C57BL6NJ_T0001237.1 MGP_C57BL6NJ_G0001141.1 mouse_genomes_project 3 2446346 2448750 + TEC TEC MGP_C57BL6NJ_T0001238.1 MGP_C57BL6NJ_G0001141.1 mouse_genomes_project 3 2448296 2448629 + TEC TEC MGP_C57BL6NJ_T0004375.1 MGP_C57BL6NJ_G0003844.1 mouse_genomes_project 3 35392656 35400293 + Mccc1os antisense antisense MGP_C57BL6NJ_T0004376.1 MGP_C57BL6NJ_G0003844.1 mouse_genomes_project 3 35392736 35402171 + Mccc1os antisense antisense MGP_C57BL6NJ_T0004377.1 MGP_C57BL6NJ_G0003844.1 mouse_genomes_project 3 35393258 35419746 + Mccc1os antisense antisense MGP_C57BL6NJ_T0014352.1 MGP_C57BL6NJ_G0012397.1 mouse_genomes_project 3 43183242 43184413 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007901.1 MGP_C57BL6NJ_G0006463.1 mouse_genomes_project 3 148797499 148867331 - lincRNA lincRNA MGP_C57BL6NJ_T0004566.1 MGP_C57BL6NJ_G0003976.1 mouse_genomes_project 3 166270348 166289344 - Gm15577 antisense antisense MGP_C57BL6NJ_T0063480.1 MGP_C57BL6NJ_G0028145.1 mouse_genomes_project 3 111523628 111553073 + MGP_C57BL6NJ_P0063480 protein_coding protein_coding MGP_C57BL6NJ_T0063481.1 MGP_C57BL6NJ_G0028145.1 mouse_genomes_project 3 111537240 111537638 + protein_coding retained_intron MGP_C57BL6NJ_T0001494.1 MGP_C57BL6NJ_G0001394.1 mouse_genomes_project 3 141173101 141183928 - TEC TEC MGP_C57BL6NJ_T0061154.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51705187 51807252 - MGP_C57BL6NJ_P0061154 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061155.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51707697 51787800 - MGP_C57BL6NJ_P0061155 Elf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061156.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51707698 51807233 - MGP_C57BL6NJ_P0061156 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061157.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51708130 51735061 - MGP_C57BL6NJ_P0061157 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061158.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51708132 51735221 - MGP_C57BL6NJ_P0061158 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061159.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51708132 51735160 - MGP_C57BL6NJ_P0061159 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061160.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51708152 51787758 - MGP_C57BL6NJ_P0061160 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061161.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51711152 51712709 - Elf2 protein_coding retained_intron MGP_C57BL6NJ_T0061162.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51717391 51807247 - MGP_C57BL6NJ_P0061162 Elf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061163.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51717391 51735014 - MGP_C57BL6NJ_P0061163 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0061164.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51717407 51807150 - Elf2 protein_coding processed_transcript MGP_C57BL6NJ_T0061165.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51717407 51735070 - MGP_C57BL6NJ_P0061165 Elf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061166.1 MGP_C57BL6NJ_G0027612.1 mouse_genomes_project 3 51717571 51735090 - MGP_C57BL6NJ_P0061166 Elf2 protein_coding protein_coding MGP_C57BL6NJ_T0007741.1 MGP_C57BL6NJ_G0006336.1 mouse_genomes_project 3 70911596 70946195 + Gm1647 lincRNA lincRNA MGP_C57BL6NJ_T0060662.1 MGP_C57BL6NJ_G0027526.1 mouse_genomes_project 3 25852253 25929385 + MGP_C57BL6NJ_P0060662 Nceh1 protein_coding protein_coding MGP_C57BL6NJ_T0060663.1 MGP_C57BL6NJ_G0027526.1 mouse_genomes_project 3 25852292 25909813 + Nceh1 protein_coding retained_intron MGP_C57BL6NJ_T0060664.1 MGP_C57BL6NJ_G0027526.1 mouse_genomes_project 3 25852292 25978738 + MGP_C57BL6NJ_P0060664 Nceh1 protein_coding protein_coding MGP_C57BL6NJ_T0060665.1 MGP_C57BL6NJ_G0027526.1 mouse_genomes_project 3 25852292 25892937 + MGP_C57BL6NJ_P0060665 Nceh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060666.1 MGP_C57BL6NJ_G0027526.1 mouse_genomes_project 3 25857729 25924011 + Nceh1 protein_coding processed_transcript MGP_C57BL6NJ_T0102237.1 MGP_C57BL6NJ_G0040233.1 mouse_genomes_project 3 98497786 98498483 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102238.1 MGP_C57BL6NJ_G0040233.1 mouse_genomes_project 3 98497962 98498725 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001341.1 MGP_C57BL6NJ_G0001242.1 mouse_genomes_project 3 53679713 53683889 + TEC TEC MGP_C57BL6NJ_T0061419.1 MGP_C57BL6NJ_G0027672.1 mouse_genomes_project 3 61186530 61192163 + MGP_C57BL6NJ_P0061419 Sucnr1 protein_coding protein_coding MGP_C57BL6NJ_T0061420.1 MGP_C57BL6NJ_G0027672.1 mouse_genomes_project 3 61186563 61190922 + Sucnr1 protein_coding processed_transcript MGP_C57BL6NJ_T0007680.1 MGP_C57BL6NJ_G0006292.1 mouse_genomes_project 3 37113078 37114442 + 4930594O21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007681.1 MGP_C57BL6NJ_G0006292.1 mouse_genomes_project 3 37113088 37113992 + 4930594O21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007707.1 MGP_C57BL6NJ_G0006309.1 mouse_genomes_project 3 49394634 49420051 + Gm31415 lincRNA lincRNA MGP_C57BL6NJ_T0007899.1 MGP_C57BL6NJ_G0006461.1 mouse_genomes_project 3 146670468 146686794 - 4930425O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0001250.1 MGP_C57BL6NJ_G0001153.1 mouse_genomes_project 3 19158855 19162910 + TEC TEC MGP_C57BL6NJ_T0014524.1 MGP_C57BL6NJ_G0012569.1 mouse_genomes_project 3 97340448 97341381 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099394.1 MGP_C57BL6NJ_G0037451.1 mouse_genomes_project 3 105480813 105484484 - Gm43462 sense_intronic sense_intronic MGP_C57BL6NJ_T0060954.1 MGP_C57BL6NJ_G0027579.1 mouse_genomes_project 3 36013633 36020919 - MGP_C57BL6NJ_P0060954 Ccna2 protein_coding protein_coding MGP_C57BL6NJ_T0060955.1 MGP_C57BL6NJ_G0027579.1 mouse_genomes_project 3 36014403 36015614 - Ccna2 protein_coding processed_transcript MGP_C57BL6NJ_T0060956.1 MGP_C57BL6NJ_G0027579.1 mouse_genomes_project 3 36014746 36020320 - MGP_C57BL6NJ_P0060956 Ccna2 protein_coding protein_coding MGP_C57BL6NJ_T0060957.1 MGP_C57BL6NJ_G0027579.1 mouse_genomes_project 3 36014746 36020696 - MGP_C57BL6NJ_P0060957 Ccna2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060958.1 MGP_C57BL6NJ_G0027579.1 mouse_genomes_project 3 36019219 36020733 - Ccna2 protein_coding retained_intron MGP_C57BL6NJ_T0010749.1 MGP_C57BL6NJ_G0008834.1 mouse_genomes_project 3 47007731 47007846 - Mir6379 miRNA miRNA MGP_C57BL6NJ_T0062696.1 MGP_C57BL6NJ_G0027976.1 mouse_genomes_project 3 98898034 99172262 + MGP_C57BL6NJ_P0062696 protein_coding protein_coding MGP_C57BL6NJ_T0062697.1 MGP_C57BL6NJ_G0027976.1 mouse_genomes_project 3 98898125 99172269 + MGP_C57BL6NJ_P0062697 protein_coding protein_coding MGP_C57BL6NJ_T0062698.1 MGP_C57BL6NJ_G0027976.1 mouse_genomes_project 3 98912760 98918584 + MGP_C57BL6NJ_P0062698 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0062720.1 MGP_C57BL6NJ_G0027976.1 mouse_genomes_project 3 99169113 99172300 + protein_coding retained_intron MGP_C57BL6NJ_T0061610.1 MGP_C57BL6NJ_G0027714.1 mouse_genomes_project 3 71138601 71397173 + MGP_C57BL6NJ_P0061610 Ppm1l protein_coding protein_coding MGP_C57BL6NJ_T0061611.1 MGP_C57BL6NJ_G0027714.1 mouse_genomes_project 3 71331986 71332748 + Ppm1l protein_coding retained_intron MGP_C57BL6NJ_T0061612.1 MGP_C57BL6NJ_G0027714.1 mouse_genomes_project 3 71377922 71389289 + Ppm1l protein_coding processed_transcript MGP_C57BL6NJ_T0061613.1 MGP_C57BL6NJ_G0027714.1 mouse_genomes_project 3 71385349 71389470 + Ppm1l protein_coding retained_intron MGP_C57BL6NJ_T0064923.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166954818 166969183 + MGP_C57BL6NJ_P0064923 Zranb2 protein_coding protein_coding MGP_C57BL6NJ_T0064924.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166955017 166969109 + MGP_C57BL6NJ_P0064924 Zranb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064925.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166955017 166969109 + MGP_C57BL6NJ_P0064925 Zranb2 protein_coding protein_coding MGP_C57BL6NJ_T0064926.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166955034 166963935 + MGP_C57BL6NJ_P0064926 Zranb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064927.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166955046 166969149 + MGP_C57BL6NJ_P0064927 Zranb2 protein_coding protein_coding MGP_C57BL6NJ_T0064928.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166955083 166967696 + Zranb2 protein_coding retained_intron MGP_C57BL6NJ_T0064929.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166959783 166962499 + Zranb2 protein_coding retained_intron MGP_C57BL6NJ_T0064930.1 MGP_C57BL6NJ_G0028424.1 mouse_genomes_project 3 166961384 166967576 + MGP_C57BL6NJ_P0064930 Zranb2 protein_coding protein_coding MGP_C57BL6NJ_T0010781.1 MGP_C57BL6NJ_G0008866.1 mouse_genomes_project 3 123654792 123654857 + Gm22408 miRNA miRNA MGP_C57BL6NJ_T0062330.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93030826 93033356 + Pygo2 protein_coding processed_transcript MGP_C57BL6NJ_T0062331.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93030873 93035741 + MGP_C57BL6NJ_P0062331 Pygo2 protein_coding protein_coding MGP_C57BL6NJ_T0062332.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93031036 93031782 + Pygo2 protein_coding processed_transcript MGP_C57BL6NJ_T0062333.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93031352 93033295 + Pygo2 protein_coding processed_transcript MGP_C57BL6NJ_T0062334.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93031449 93035741 + MGP_C57BL6NJ_P0062334 Pygo2 protein_coding protein_coding MGP_C57BL6NJ_T0062335.1 MGP_C57BL6NJ_G0027859.1 mouse_genomes_project 3 93031644 93033605 + Pygo2 protein_coding processed_transcript MGP_C57BL6NJ_T0062631.1 MGP_C57BL6NJ_G0027960.1 mouse_genomes_project 3 98139828 98422278 + MGP_C57BL6NJ_P0062631 Gm4778 protein_coding protein_coding MGP_C57BL6NJ_T0062635.1 MGP_C57BL6NJ_G0027960.1 mouse_genomes_project 3 98420283 98422278 + MGP_C57BL6NJ_P0062635 Gm4778 protein_coding protein_coding MGP_C57BL6NJ_T0062543.1 MGP_C57BL6NJ_G0027895.1 mouse_genomes_project 3 94345090 94348344 + MGP_C57BL6NJ_P0062543 S100a5 protein_coding protein_coding MGP_C57BL6NJ_T0062544.1 MGP_C57BL6NJ_G0027895.1 mouse_genomes_project 3 94346373 94348344 + MGP_C57BL6NJ_P0062544 S100a5 protein_coding protein_coding MGP_C57BL6NJ_T0099093.1 MGP_C57BL6NJ_G0037157.1 mouse_genomes_project 3 71531658 71531772 + Gm25621 rRNA rRNA MGP_C57BL6NJ_T0001468.1 MGP_C57BL6NJ_G0001369.1 mouse_genomes_project 3 134425873 134427952 - TEC TEC MGP_C57BL6NJ_T0001314.1 MGP_C57BL6NJ_G0001217.1 mouse_genomes_project 3 51397003 51398279 - TEC TEC MGP_C57BL6NJ_T0014592.1 MGP_C57BL6NJ_G0012637.1 mouse_genomes_project 3 114268692 114269117 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014330.1 MGP_C57BL6NJ_G0012375.1 mouse_genomes_project 3 36592691 36593796 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100277.1 MGP_C57BL6NJ_G0038323.1 mouse_genomes_project 3 92387171 92387333 + Gm23054 snRNA snRNA MGP_C57BL6NJ_T0014503.1 MGP_C57BL6NJ_G0012548.1 mouse_genomes_project 3 90359795 90360104 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010802.1 MGP_C57BL6NJ_G0008887.1 mouse_genomes_project 3 154935503 154935587 - Gm22901 miRNA miRNA MGP_C57BL6NJ_T0062633.1 MGP_C57BL6NJ_G0027961.1 mouse_genomes_project 3 98181658 98184570 - MGP_C57BL6NJ_P0062633 protein_coding protein_coding MGP_C57BL6NJ_T0014527.1 MGP_C57BL6NJ_G0012572.1 mouse_genomes_project 3 97497052 97497604 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061191.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52158749 52187469 + Mgst2 protein_coding processed_transcript MGP_C57BL6NJ_T0061192.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52159567 52182738 + Mgst2 protein_coding processed_transcript MGP_C57BL6NJ_T0061193.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52159638 52188345 + MGP_C57BL6NJ_P0061193 Mgst2 protein_coding protein_coding MGP_C57BL6NJ_T0061194.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52177095 52188334 + Mgst2 protein_coding processed_transcript MGP_C57BL6NJ_T0061195.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52177547 52188181 + Mgst2 protein_coding processed_transcript MGP_C57BL6NJ_T0061196.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52180768 52188336 + Mgst2 protein_coding retained_intron MGP_C57BL6NJ_T0061197.1 MGP_C57BL6NJ_G0027618.1 mouse_genomes_project 3 52187283 52188339 + Mgst2 protein_coding retained_intron MGP_C57BL6NJ_T0060748.1 MGP_C57BL6NJ_G0027542.1 mouse_genomes_project 3 29644816 29671777 + MGP_C57BL6NJ_P0060748 Lrriq4 protein_coding protein_coding MGP_C57BL6NJ_T0060749.1 MGP_C57BL6NJ_G0027542.1 mouse_genomes_project 3 29645638 29671645 + MGP_C57BL6NJ_P0060749 Lrriq4 protein_coding protein_coding MGP_C57BL6NJ_T0060750.1 MGP_C57BL6NJ_G0027542.1 mouse_genomes_project 3 29648194 29671645 + MGP_C57BL6NJ_P0060750 Lrriq4 protein_coding protein_coding MGP_C57BL6NJ_T0007842.1 MGP_C57BL6NJ_G0006414.1 mouse_genomes_project 3 122425029 122427335 + Gm43202 lincRNA lincRNA MGP_C57BL6NJ_T0060937.1 MGP_C57BL6NJ_G0027574.1 mouse_genomes_project 3 35567013 35586339 + MGP_C57BL6NJ_P0060937 D3Ertd254e protein_coding protein_coding MGP_C57BL6NJ_T0060938.1 MGP_C57BL6NJ_G0027574.1 mouse_genomes_project 3 35567158 35578671 + MGP_C57BL6NJ_P0060938 D3Ertd254e protein_coding protein_coding MGP_C57BL6NJ_T0060939.1 MGP_C57BL6NJ_G0027574.1 mouse_genomes_project 3 35575518 35586332 + MGP_C57BL6NJ_P0060939 D3Ertd254e protein_coding protein_coding MGP_C57BL6NJ_T0099418.1 MGP_C57BL6NJ_G0037475.1 mouse_genomes_project 3 109368936 109369652 - C030032O16Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0099439.1 MGP_C57BL6NJ_G0037496.1 mouse_genomes_project 3 152895410 152898597 - Gm43707 sense_intronic sense_intronic MGP_C57BL6NJ_T0001301.1 MGP_C57BL6NJ_G0001204.1 mouse_genomes_project 3 45251320 45253889 - TEC TEC MGP_C57BL6NJ_T0001252.1 MGP_C57BL6NJ_G0001155.1 mouse_genomes_project 3 23660153 23660347 + TEC TEC MGP_C57BL6NJ_T0001367.1 MGP_C57BL6NJ_G0001268.1 mouse_genomes_project 3 67552716 67554725 + TEC TEC MGP_C57BL6NJ_T0001373.1 MGP_C57BL6NJ_G0001274.1 mouse_genomes_project 3 75453052 75455177 + TEC TEC MGP_C57BL6NJ_T0062571.1 MGP_C57BL6NJ_G0027914.1 mouse_genomes_project 3 96412618 96414059 - MGP_C57BL6NJ_P0062571 protein_coding protein_coding MGP_C57BL6NJ_T0100266.1 MGP_C57BL6NJ_G0038312.1 mouse_genomes_project 3 70283734 70283923 - Gm22073 snRNA snRNA MGP_C57BL6NJ_T0014669.1 MGP_C57BL6NJ_G0012714.1 mouse_genomes_project 3 142651232 142651685 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100263.1 MGP_C57BL6NJ_G0038309.1 mouse_genomes_project 3 67333917 67334024 - Gm25755 snRNA snRNA MGP_C57BL6NJ_T0062582.1 MGP_C57BL6NJ_G0027924.1 mouse_genomes_project 3 96620594 96622174 - MGP_C57BL6NJ_P0062582 Lce6a protein_coding protein_coding MGP_C57BL6NJ_T0062583.1 MGP_C57BL6NJ_G0027924.1 mouse_genomes_project 3 96620598 96621694 - MGP_C57BL6NJ_P0062583 Lce6a protein_coding protein_coding MGP_C57BL6NJ_T0099557.1 MGP_C57BL6NJ_G0037604.1 mouse_genomes_project 3 96059119 96102236 - 4930511M18Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0012095.1 MGP_C57BL6NJ_G0010158.1 mouse_genomes_project 3 96352608 96353923 + MGP_C57BL6NJ_P0012095 Sprr2g polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0014400.1 MGP_C57BL6NJ_G0012445.1 mouse_genomes_project 3 58845352 58845586 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061606.1 MGP_C57BL6NJ_G0027712.1 mouse_genomes_project 3 70842636 70907090 - MGP_C57BL6NJ_P0061606 Kpna4 protein_coding protein_coding MGP_C57BL6NJ_T0061607.1 MGP_C57BL6NJ_G0027712.1 mouse_genomes_project 3 70847708 70907069 - MGP_C57BL6NJ_P0061607 Kpna4 protein_coding protein_coding MGP_C57BL6NJ_T0061608.1 MGP_C57BL6NJ_G0027712.1 mouse_genomes_project 3 70873111 70906607 - MGP_C57BL6NJ_P0061608 Kpna4 protein_coding protein_coding MGP_C57BL6NJ_T0064743.1 MGP_C57BL6NJ_G0028399.1 mouse_genomes_project 3 160764459 160805939 - MGP_C57BL6NJ_P0064743 Ptgfr protein_coding protein_coding MGP_C57BL6NJ_T0064744.1 MGP_C57BL6NJ_G0028399.1 mouse_genomes_project 3 160769364 160804342 - MGP_C57BL6NJ_P0064744 Ptgfr protein_coding protein_coding MGP_C57BL6NJ_T0064745.1 MGP_C57BL6NJ_G0028399.1 mouse_genomes_project 3 160769740 160802474 - Ptgfr protein_coding processed_transcript MGP_C57BL6NJ_T0060814.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31638079 31693677 + MGP_C57BL6NJ_P0060814 Mfn1 protein_coding protein_coding MGP_C57BL6NJ_T0060815.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31638145 31655672 + Mfn1 protein_coding retained_intron MGP_C57BL6NJ_T0060816.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31638153 31655385 + MGP_C57BL6NJ_P0060816 Mfn1 protein_coding protein_coding MGP_C57BL6NJ_T0060817.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31640159 31652823 + MGP_C57BL6NJ_P0060817 Mfn1 protein_coding protein_coding MGP_C57BL6NJ_T0060818.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31640168 31691791 + MGP_C57BL6NJ_P0060818 Mfn1 protein_coding protein_coding MGP_C57BL6NJ_T0060819.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31655220 31675710 + Mfn1 protein_coding retained_intron MGP_C57BL6NJ_T0060820.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31665610 31675978 + Mfn1 protein_coding retained_intron MGP_C57BL6NJ_T0060821.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31674121 31682906 + MGP_C57BL6NJ_P0060821 Mfn1 protein_coding protein_coding MGP_C57BL6NJ_T0060822.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31675483 31676376 + Mfn1 protein_coding retained_intron MGP_C57BL6NJ_T0060823.1 MGP_C57BL6NJ_G0027557.1 mouse_genomes_project 3 31688222 31691595 + Mfn1 protein_coding retained_intron MGP_C57BL6NJ_T0014402.1 MGP_C57BL6NJ_G0012447.1 mouse_genomes_project 3 59244799 59245171 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100319.1 MGP_C57BL6NJ_G0038365.1 mouse_genomes_project 3 154621196 154621349 - Gm25627 snRNA snRNA MGP_C57BL6NJ_T0061493.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66642013 66910942 + Kcnab1 protein_coding processed_transcript MGP_C57BL6NJ_T0061494.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66642013 66923370 + MGP_C57BL6NJ_P0061494 Kcnab1 protein_coding protein_coding MGP_C57BL6NJ_T0061495.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66726888 66923374 + Kcnab1 protein_coding processed_transcript MGP_C57BL6NJ_T0061496.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66785247 66922235 + Kcnab1 protein_coding processed_transcript MGP_C57BL6NJ_T0061497.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66829941 66902245 + Kcnab1 protein_coding processed_transcript MGP_C57BL6NJ_T0061498.1 MGP_C57BL6NJ_G0027689.1 mouse_genomes_project 3 66897261 66903980 + Kcnab1 protein_coding retained_intron MGP_C57BL6NJ_T0060805.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31618864 31629439 + MGP_C57BL6NJ_P0060805 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060806.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31619140 31629349 + MGP_C57BL6NJ_P0060806 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060807.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31619269 31628172 + MGP_C57BL6NJ_P0060807 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060808.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31619501 31621781 + Zfp639 protein_coding processed_transcript MGP_C57BL6NJ_T0060809.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31620783 31628235 + Zfp639 protein_coding retained_intron MGP_C57BL6NJ_T0060810.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31621605 31628174 + MGP_C57BL6NJ_P0060810 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060811.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31623900 31629291 + MGP_C57BL6NJ_P0060811 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060812.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31625685 31629123 + MGP_C57BL6NJ_P0060812 Zfp639 protein_coding protein_coding MGP_C57BL6NJ_T0060813.1 MGP_C57BL6NJ_G0027556.1 mouse_genomes_project 3 31627404 31628166 + Zfp639 protein_coding retained_intron MGP_C57BL6NJ_T0099378.1 MGP_C57BL6NJ_G0037436.1 mouse_genomes_project 3 17974131 17974751 + BC002189 sense_intronic sense_intronic MGP_C57BL6NJ_T0061054.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355674 40372982 + MGP_C57BL6NJ_P0061054 Plk4 protein_coding protein_coding MGP_C57BL6NJ_T0061055.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355683 40363985 + Plk4 protein_coding retained_intron MGP_C57BL6NJ_T0061056.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355697 40357279 + Plk4 protein_coding retained_intron MGP_C57BL6NJ_T0061057.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355697 40372850 + MGP_C57BL6NJ_P0061057 Plk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061058.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355705 40361713 + Plk4 protein_coding retained_intron MGP_C57BL6NJ_T0061059.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355709 40372982 + MGP_C57BL6NJ_P0061059 Plk4 protein_coding protein_coding MGP_C57BL6NJ_T0061060.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40355909 40372516 + MGP_C57BL6NJ_P0061060 Plk4 protein_coding protein_coding MGP_C57BL6NJ_T0061061.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40356436 40360661 + MGP_C57BL6NJ_P0061061 Plk4 protein_coding protein_coding MGP_C57BL6NJ_T0061062.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40357118 40357700 + Plk4 protein_coding retained_intron MGP_C57BL6NJ_T0061063.1 MGP_C57BL6NJ_G0027598.1 mouse_genomes_project 3 40368836 40372981 + MGP_C57BL6NJ_P0061063 Plk4 protein_coding protein_coding MGP_C57BL6NJ_T0004402.1 MGP_C57BL6NJ_G0003865.1 mouse_genomes_project 3 62229226 62231374 - Gm37035 antisense antisense MGP_C57BL6NJ_T0063467.1 MGP_C57BL6NJ_G0028141.1 mouse_genomes_project 3 111353311 111359896 + Wdr77 protein_coding retained_intron MGP_C57BL6NJ_T0063468.1 MGP_C57BL6NJ_G0028141.1 mouse_genomes_project 3 111353317 111363841 + MGP_C57BL6NJ_P0063468 Wdr77 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063469.1 MGP_C57BL6NJ_G0028141.1 mouse_genomes_project 3 111353387 111363181 + MGP_C57BL6NJ_P0063469 Wdr77 protein_coding protein_coding MGP_C57BL6NJ_T0063470.1 MGP_C57BL6NJ_G0028141.1 mouse_genomes_project 3 111358252 111359355 + Wdr77 protein_coding retained_intron MGP_C57BL6NJ_T0063729.1 MGP_C57BL6NJ_G0028206.1 mouse_genomes_project 3 114625357 114625750 - MGP_C57BL6NJ_P0063729 Gm9857 protein_coding protein_coding MGP_C57BL6NJ_T0063332.1 MGP_C57BL6NJ_G0028110.1 mouse_genomes_project 3 108829070 108831703 - MGP_C57BL6NJ_P0063332 Atg4a-ps protein_coding protein_coding MGP_C57BL6NJ_T0001510.1 MGP_C57BL6NJ_G0001410.1 mouse_genomes_project 3 160012965 160017384 - TEC TEC MGP_C57BL6NJ_T0004527.1 MGP_C57BL6NJ_G0003947.1 mouse_genomes_project 3 137154999 137159828 + Gm42650 antisense antisense MGP_C57BL6NJ_T0014239.1 MGP_C57BL6NJ_G0012284.1 mouse_genomes_project 3 5279391 5279976 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063110.1 MGP_C57BL6NJ_G0028059.1 mouse_genomes_project 3 102169162 102234092 - MGP_C57BL6NJ_P0063110 Chd1l protein_coding protein_coding MGP_C57BL6NJ_T0063111.1 MGP_C57BL6NJ_G0028059.1 mouse_genomes_project 3 102184065 102189949 - Chd1l protein_coding retained_intron MGP_C57BL6NJ_T0063112.1 MGP_C57BL6NJ_G0028059.1 mouse_genomes_project 3 102193871 102234081 - Chd1l protein_coding retained_intron MGP_C57BL6NJ_T0103081.1 MGP_C57BL6NJ_G0040875.1 mouse_genomes_project 3 90886340 90886865 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001442.1 MGP_C57BL6NJ_G0001343.1 mouse_genomes_project 3 129371277 129373826 - TEC TEC MGP_C57BL6NJ_T0062628.1 MGP_C57BL6NJ_G0027957.1 mouse_genomes_project 3 97944001 97945099 + MGP_C57BL6NJ_P0062628 Tdpoz3 protein_coding protein_coding MGP_C57BL6NJ_T0061412.1 MGP_C57BL6NJ_G0027667.1 mouse_genomes_project 3 60757336 60785340 + MGP_C57BL6NJ_P0061412 Gm5538 protein_coding protein_coding MGP_C57BL6NJ_T0001323.1 MGP_C57BL6NJ_G0001226.1 mouse_genomes_project 3 52178433 52179534 + TEC TEC MGP_C57BL6NJ_T0001358.1 MGP_C57BL6NJ_G0001259.1 mouse_genomes_project 3 59681318 59682426 + TEC TEC MGP_C57BL6NJ_T0063036.1 MGP_C57BL6NJ_G0028044.1 mouse_genomes_project 3 101079089 101099603 + MGP_C57BL6NJ_P0063036 Gm42957 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001249.1 MGP_C57BL6NJ_G0001152.1 mouse_genomes_project 3 18742528 18742774 + TEC TEC MGP_C57BL6NJ_T0014682.1 MGP_C57BL6NJ_G0012727.1 mouse_genomes_project 3 144133568 144133727 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007735.1 MGP_C57BL6NJ_G0006330.1 mouse_genomes_project 3 64766090 64784106 + Gm34240 lincRNA lincRNA MGP_C57BL6NJ_T0060438.1 MGP_C57BL6NJ_G0027468.1 mouse_genomes_project 3 4943524 4985950 - MGP_C57BL6NJ_P0060438 Il7 protein_coding protein_coding MGP_C57BL6NJ_T0060439.1 MGP_C57BL6NJ_G0027468.1 mouse_genomes_project 3 4943618 4986511 - Il7 protein_coding processed_transcript MGP_C57BL6NJ_T0064192.1 MGP_C57BL6NJ_G0028291.1 mouse_genomes_project 3 137306813 137325163 + MGP_C57BL6NJ_P0064192 Pla2g12a protein_coding protein_coding MGP_C57BL6NJ_T0064193.1 MGP_C57BL6NJ_G0028291.1 mouse_genomes_project 3 137307021 137324277 + MGP_C57BL6NJ_P0064193 Pla2g12a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064194.1 MGP_C57BL6NJ_G0028291.1 mouse_genomes_project 3 137309377 137324295 + MGP_C57BL6NJ_P0064194 Pla2g12a protein_coding protein_coding MGP_C57BL6NJ_T0064195.1 MGP_C57BL6NJ_G0028291.1 mouse_genomes_project 3 137322167 137325159 + Pla2g12a protein_coding retained_intron MGP_C57BL6NJ_T0062336.1 MGP_C57BL6NJ_G0027860.1 mouse_genomes_project 3 93037323 93051552 + MGP_C57BL6NJ_P0062336 Pbxip1 protein_coding protein_coding MGP_C57BL6NJ_T0062337.1 MGP_C57BL6NJ_G0027860.1 mouse_genomes_project 3 93037329 93046146 + Pbxip1 protein_coding processed_transcript MGP_C57BL6NJ_T0062338.1 MGP_C57BL6NJ_G0027860.1 mouse_genomes_project 3 93037332 93046785 + MGP_C57BL6NJ_P0062338 Pbxip1 protein_coding protein_coding MGP_C57BL6NJ_T0062339.1 MGP_C57BL6NJ_G0027860.1 mouse_genomes_project 3 93037371 93046094 + MGP_C57BL6NJ_P0062339 Pbxip1 protein_coding protein_coding MGP_C57BL6NJ_T0062340.1 MGP_C57BL6NJ_G0027860.1 mouse_genomes_project 3 93037373 93046138 + MGP_C57BL6NJ_P0062340 Pbxip1 protein_coding protein_coding MGP_C57BL6NJ_T0062545.1 MGP_C57BL6NJ_G0027896.1 mouse_genomes_project 3 94349445 94350978 + MGP_C57BL6NJ_P0062545 S100a6 protein_coding protein_coding MGP_C57BL6NJ_T0062546.1 MGP_C57BL6NJ_G0027896.1 mouse_genomes_project 3 94349717 94350571 + S100a6 protein_coding retained_intron MGP_C57BL6NJ_T0062547.1 MGP_C57BL6NJ_G0027896.1 mouse_genomes_project 3 94349868 94350978 + MGP_C57BL6NJ_P0062547 S100a6 protein_coding protein_coding MGP_C57BL6NJ_T0062548.1 MGP_C57BL6NJ_G0027896.1 mouse_genomes_project 3 94350323 94363626 + MGP_C57BL6NJ_P0062548 S100a6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060488.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7953931 7967371 - MGP_C57BL6NJ_P0060488 protein_coding protein_coding MGP_C57BL6NJ_T0060489.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7953933 7958706 - protein_coding retained_intron MGP_C57BL6NJ_T0060490.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7954597 7967367 - MGP_C57BL6NJ_P0060490 protein_coding protein_coding MGP_C57BL6NJ_T0060491.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7954660 7967371 - MGP_C57BL6NJ_P0060491 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060492.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7954795 7964679 - MGP_C57BL6NJ_P0060492 protein_coding protein_coding MGP_C57BL6NJ_T0060493.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7958636 7960401 - protein_coding retained_intron MGP_C57BL6NJ_T0060494.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7959910 7967368 - protein_coding processed_transcript MGP_C57BL6NJ_T0060495.1 MGP_C57BL6NJ_G0027485.1 mouse_genomes_project 3 7966544 7967370 - protein_coding processed_transcript MGP_C57BL6NJ_T0060942.1 MGP_C57BL6NJ_G0027576.1 mouse_genomes_project 3 35895113 35922728 - MGP_C57BL6NJ_P0060942 Anxa5 protein_coding protein_coding MGP_C57BL6NJ_T0060943.1 MGP_C57BL6NJ_G0027576.1 mouse_genomes_project 3 35895354 35898519 - Anxa5 protein_coding retained_intron MGP_C57BL6NJ_T0060944.1 MGP_C57BL6NJ_G0027576.1 mouse_genomes_project 3 35898395 35922493 - MGP_C57BL6NJ_P0060944 Anxa5 protein_coding protein_coding MGP_C57BL6NJ_T0004567.1 MGP_C57BL6NJ_G0003977.1 mouse_genomes_project 3 166948173 166954749 - Gm43159 antisense antisense MGP_C57BL6NJ_T0014258.1 MGP_C57BL6NJ_G0012303.1 mouse_genomes_project 3 10683697 10684661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101576.1 MGP_C57BL6NJ_G0039622.1 mouse_genomes_project 3 65701239 65701397 - Gm23897 snoRNA snoRNA MGP_C57BL6NJ_T0101600.1 MGP_C57BL6NJ_G0039646.1 mouse_genomes_project 3 103880830 103880947 - Gm24216 snoRNA snoRNA MGP_C57BL6NJ_T0063015.1 MGP_C57BL6NJ_G0028036.1 mouse_genomes_project 3 100953661 100959314 + MGP_C57BL6NJ_P0063015 Hfe2 protein_coding protein_coding MGP_C57BL6NJ_T0061959.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91364001 91376704 - MGP_C57BL6NJ_P0061959 Bcan protein_coding protein_coding MGP_C57BL6NJ_T0061960.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91368983 91370925 - Bcan protein_coding retained_intron MGP_C57BL6NJ_T0061961.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91368983 91374325 - Bcan protein_coding retained_intron MGP_C57BL6NJ_T0061962.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91370063 91372835 - Bcan protein_coding retained_intron MGP_C57BL6NJ_T0061963.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91372914 91373735 - Bcan protein_coding retained_intron MGP_C57BL6NJ_T0061964.1 MGP_C57BL6NJ_G0027797.1 mouse_genomes_project 3 91373602 91376108 - MGP_C57BL6NJ_P0061964 Bcan protein_coding protein_coding MGP_C57BL6NJ_T0062610.1 MGP_C57BL6NJ_G0027947.1 mouse_genomes_project 3 97199725 97204410 + MGP_C57BL6NJ_P0062610 Crnn protein_coding protein_coding MGP_C57BL6NJ_T0062611.1 MGP_C57BL6NJ_G0027947.1 mouse_genomes_project 3 97199727 97204758 + MGP_C57BL6NJ_P0062611 Crnn protein_coding protein_coding MGP_C57BL6NJ_T0062612.1 MGP_C57BL6NJ_G0027947.1 mouse_genomes_project 3 97203148 97204757 + MGP_C57BL6NJ_P0062612 Crnn protein_coding protein_coding MGP_C57BL6NJ_T0014290.1 MGP_C57BL6NJ_G0012335.1 mouse_genomes_project 3 19143735 19145329 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062981.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462262 100499186 + MGP_C57BL6NJ_P0062981 Otud7b protein_coding protein_coding MGP_C57BL6NJ_T0062982.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462262 100501993 + MGP_C57BL6NJ_P0062982 Otud7b protein_coding protein_coding MGP_C57BL6NJ_T0062983.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462262 100518797 + MGP_C57BL6NJ_P0062983 Otud7b protein_coding protein_coding MGP_C57BL6NJ_T0062984.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462262 100518797 + MGP_C57BL6NJ_P0062984 Otud7b protein_coding protein_coding MGP_C57BL6NJ_T0062985.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462281 100488776 + Otud7b protein_coding processed_transcript MGP_C57BL6NJ_T0062986.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100462283 100499221 + Otud7b protein_coding processed_transcript MGP_C57BL6NJ_T0062987.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100464822 100518797 + MGP_C57BL6NJ_P0062987 Otud7b protein_coding protein_coding MGP_C57BL6NJ_T0062988.1 MGP_C57BL6NJ_G0028023.1 mouse_genomes_project 3 100508371 100510231 + Otud7b protein_coding processed_transcript MGP_C57BL6NJ_T0007625.1 MGP_C57BL6NJ_G0006252.1 mouse_genomes_project 3 11292737 11293875 + lincRNA lincRNA MGP_C57BL6NJ_T0007626.1 MGP_C57BL6NJ_G0006252.1 mouse_genomes_project 3 11292764 11293876 + lincRNA lincRNA MGP_C57BL6NJ_T0007627.1 MGP_C57BL6NJ_G0006252.1 mouse_genomes_project 3 11292810 11293663 + lincRNA lincRNA MGP_C57BL6NJ_T0007628.1 MGP_C57BL6NJ_G0006252.1 mouse_genomes_project 3 11292988 11295679 + lincRNA lincRNA MGP_C57BL6NJ_T0062426.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93726366 93748915 + MGP_C57BL6NJ_P0062426 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062427.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93726368 93767311 + MGP_C57BL6NJ_P0062427 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062428.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733257 93767310 + MGP_C57BL6NJ_P0062428 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062429.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733349 93747880 + MGP_C57BL6NJ_P0062429 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062430.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733371 93767305 + MGP_C57BL6NJ_P0062430 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062431.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733382 93746381 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062432.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733382 93744656 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062433.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93733432 93755568 + MGP_C57BL6NJ_P0062433 Tpm3 protein_coding protein_coding MGP_C57BL6NJ_T0062434.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93743149 93744326 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062435.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93744087 93746592 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062436.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93744217 93744694 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062437.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93744234 93745354 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062438.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93744839 93746827 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062439.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93746415 93747257 + Tpm3 protein_coding retained_intron MGP_C57BL6NJ_T0062440.1 MGP_C57BL6NJ_G0027872.1 mouse_genomes_project 3 93746843 93755568 + Tpm3 protein_coding processed_transcript MGP_C57BL6NJ_T0062768.1 MGP_C57BL6NJ_G0027986.1 mouse_genomes_project 3 99370195 99383320 + MGP_C57BL6NJ_P0062768 Vps72 protein_coding protein_coding MGP_C57BL6NJ_T0062769.1 MGP_C57BL6NJ_G0027986.1 mouse_genomes_project 3 99370215 99378963 + Vps72 protein_coding processed_transcript MGP_C57BL6NJ_T0062770.1 MGP_C57BL6NJ_G0027986.1 mouse_genomes_project 3 99370246 99382990 + Vps72 protein_coding processed_transcript MGP_C57BL6NJ_T0062771.1 MGP_C57BL6NJ_G0027986.1 mouse_genomes_project 3 99373821 99379771 + Vps72 protein_coding processed_transcript MGP_C57BL6NJ_T0062772.1 MGP_C57BL6NJ_G0027986.1 mouse_genomes_project 3 99375736 99379890 + Vps72 protein_coding retained_intron MGP_C57BL6NJ_T0014433.1 MGP_C57BL6NJ_G0012478.1 mouse_genomes_project 3 67714672 67715428 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014591.1 MGP_C57BL6NJ_G0012636.1 mouse_genomes_project 3 114107739 114108118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062168.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92634948 92641013 - MGP_C57BL6NJ_P0062168 Rusc1 protein_coding protein_coding MGP_C57BL6NJ_T0062169.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92634948 92644258 - MGP_C57BL6NJ_P0062169 Rusc1 protein_coding protein_coding MGP_C57BL6NJ_T0062170.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92634948 92644279 - MGP_C57BL6NJ_P0062170 Rusc1 protein_coding protein_coding MGP_C57BL6NJ_T0062171.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92638088 92640709 - Rusc1 protein_coding retained_intron MGP_C57BL6NJ_T0062172.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92639188 92640943 - MGP_C57BL6NJ_P0062172 Rusc1 protein_coding protein_coding MGP_C57BL6NJ_T0062173.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92640022 92640723 - Rusc1 protein_coding retained_intron MGP_C57BL6NJ_T0062174.1 MGP_C57BL6NJ_G0027833.1 mouse_genomes_project 3 92640206 92640943 - MGP_C57BL6NJ_P0062174 Rusc1 protein_coding protein_coding MGP_C57BL6NJ_T0060517.1 MGP_C57BL6NJ_G0027492.1 mouse_genomes_project 3 12532779 12537755 - MGP_C57BL6NJ_P0060517 1810022K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0060518.1 MGP_C57BL6NJ_G0027492.1 mouse_genomes_project 3 12532784 12537691 - MGP_C57BL6NJ_P0060518 1810022K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0060519.1 MGP_C57BL6NJ_G0027492.1 mouse_genomes_project 3 12532784 12537731 - MGP_C57BL6NJ_P0060519 1810022K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0060520.1 MGP_C57BL6NJ_G0027492.1 mouse_genomes_project 3 12532788 12537724 - MGP_C57BL6NJ_P0060520 1810022K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0060521.1 MGP_C57BL6NJ_G0027492.1 mouse_genomes_project 3 12535653 12537713 - 1810022K09Rik protein_coding retained_intron MGP_C57BL6NJ_T0014371.1 MGP_C57BL6NJ_G0012416.1 mouse_genomes_project 3 50043334 50043755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007881.1 MGP_C57BL6NJ_G0006444.1 mouse_genomes_project 3 140383937 140420203 - Gm29811 lincRNA lincRNA MGP_C57BL6NJ_T0018421.1 MGP_C57BL6NJ_G0015898.1 mouse_genomes_project 3 52720641 52722026 + Gm38132 processed_transcript lincRNA MGP_C57BL6NJ_T0018422.1 MGP_C57BL6NJ_G0015898.1 mouse_genomes_project 3 52720670 52721683 + Gm38132 processed_transcript retained_intron MGP_C57BL6NJ_T0014607.1 MGP_C57BL6NJ_G0012652.1 mouse_genomes_project 3 119015142 119015539 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014434.1 MGP_C57BL6NJ_G0012479.1 mouse_genomes_project 3 67779285 67779438 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014581.1 MGP_C57BL6NJ_G0012626.1 mouse_genomes_project 3 111449089 111449557 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010798.1 MGP_C57BL6NJ_G0008883.1 mouse_genomes_project 3 145662902 145662983 - Mir6380 miRNA miRNA MGP_C57BL6NJ_T0018476.1 MGP_C57BL6NJ_G0015918.1 mouse_genomes_project 3 135361935 135478100 - D030025E07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018477.1 MGP_C57BL6NJ_G0015918.1 mouse_genomes_project 3 135369101 135378257 - D030025E07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018478.1 MGP_C57BL6NJ_G0015918.1 mouse_genomes_project 3 135369478 135478103 - D030025E07Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018479.1 MGP_C57BL6NJ_G0015918.1 mouse_genomes_project 3 135388707 135478050 - D030025E07Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018480.1 MGP_C57BL6NJ_G0015918.1 mouse_genomes_project 3 135437883 135478089 - D030025E07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0062494.1 MGP_C57BL6NJ_G0027883.1 mouse_genomes_project 3 94172624 94187879 - MGP_C57BL6NJ_P0062494 Npr1 protein_coding protein_coding MGP_C57BL6NJ_T0062495.1 MGP_C57BL6NJ_G0027883.1 mouse_genomes_project 3 94172743 94173815 - Npr1 protein_coding retained_intron MGP_C57BL6NJ_T0062496.1 MGP_C57BL6NJ_G0027883.1 mouse_genomes_project 3 94177114 94179488 - Npr1 protein_coding processed_transcript MGP_C57BL6NJ_T0062497.1 MGP_C57BL6NJ_G0027883.1 mouse_genomes_project 3 94179410 94180951 - Npr1 protein_coding retained_intron MGP_C57BL6NJ_T0062498.1 MGP_C57BL6NJ_G0027883.1 mouse_genomes_project 3 94179429 94183433 - MGP_C57BL6NJ_P0062498 Npr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018453.1 MGP_C57BL6NJ_G0015912.1 mouse_genomes_project 3 114822223 114824586 - Gm43223 processed_transcript lincRNA MGP_C57BL6NJ_T0018454.1 MGP_C57BL6NJ_G0015912.1 mouse_genomes_project 3 114822232 114824364 - Gm43223 processed_transcript processed_transcript MGP_C57BL6NJ_T0064116.1 MGP_C57BL6NJ_G0028276.1 mouse_genomes_project 3 134719059 134743561 - MGP_C57BL6NJ_P0064116 Larp7 protein_coding protein_coding MGP_C57BL6NJ_T0064117.1 MGP_C57BL6NJ_G0028276.1 mouse_genomes_project 3 134731347 134743559 - MGP_C57BL6NJ_P0064117 Larp7 protein_coding protein_coding MGP_C57BL6NJ_T0062789.1 MGP_C57BL6NJ_G0027991.1 mouse_genomes_project 3 99401718 99404558 - MGP_C57BL6NJ_P0062789 Tnfaip8l2 protein_coding protein_coding MGP_C57BL6NJ_T0014491.1 MGP_C57BL6NJ_G0012536.1 mouse_genomes_project 3 85586411 85586991 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004427.1 MGP_C57BL6NJ_G0003883.1 mouse_genomes_project 3 92163282 92168256 - antisense antisense MGP_C57BL6NJ_T0004562.1 MGP_C57BL6NJ_G0003973.1 mouse_genomes_project 3 162935802 162951908 - Asb17os antisense antisense MGP_C57BL6NJ_T0004563.1 MGP_C57BL6NJ_G0003973.1 mouse_genomes_project 3 162949879 162951931 - Asb17os antisense antisense MGP_C57BL6NJ_T0014558.1 MGP_C57BL6NJ_G0012603.1 mouse_genomes_project 3 105256912 105257928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014536.1 MGP_C57BL6NJ_G0012581.1 mouse_genomes_project 3 99757533 99757885 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007921.1 MGP_C57BL6NJ_G0006480.1 mouse_genomes_project 3 152230639 152315000 - Gm42707 lincRNA lincRNA MGP_C57BL6NJ_T0007923.1 MGP_C57BL6NJ_G0006480.1 mouse_genomes_project 3 152268908 152314624 - Gm42707 lincRNA lincRNA MGP_C57BL6NJ_T0060448.1 MGP_C57BL6NJ_G0027471.1 mouse_genomes_project 3 6254533 6393175 - MGP_C57BL6NJ_P0060448 Mrps28 protein_coding protein_coding MGP_C57BL6NJ_T0014540.1 MGP_C57BL6NJ_G0012585.1 mouse_genomes_project 3 100306357 100306717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001245.1 MGP_C57BL6NJ_G0001148.1 mouse_genomes_project 3 11093511 11097206 + TEC TEC MGP_C57BL6NJ_T0061319.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56403542 56988832 - MGP_C57BL6NJ_P0061319 Nbea protein_coding protein_coding MGP_C57BL6NJ_T0061320.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56403546 56469357 - Nbea protein_coding processed_transcript MGP_C57BL6NJ_T0061321.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56404867 56569809 - Nbea protein_coding processed_transcript MGP_C57BL6NJ_T0061322.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56474776 56504981 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061323.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56561638 56570852 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061324.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56562537 56566397 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061326.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56759034 56766360 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061327.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56796241 56798666 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061328.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56814827 56817979 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0061329.1 MGP_C57BL6NJ_G0027644.1 mouse_genomes_project 3 56825503 56833894 - Nbea protein_coding retained_intron MGP_C57BL6NJ_T0062825.1 MGP_C57BL6NJ_G0027997.1 mouse_genomes_project 3 99515145 99525041 - MGP_C57BL6NJ_P0062825 Bnipl protein_coding protein_coding MGP_C57BL6NJ_T0062826.1 MGP_C57BL6NJ_G0027997.1 mouse_genomes_project 3 99515169 99524897 - MGP_C57BL6NJ_P0062826 Bnipl protein_coding protein_coding MGP_C57BL6NJ_T0062827.1 MGP_C57BL6NJ_G0027997.1 mouse_genomes_project 3 99515699 99524984 - MGP_C57BL6NJ_P0062827 Bnipl protein_coding protein_coding MGP_C57BL6NJ_T0062828.1 MGP_C57BL6NJ_G0027997.1 mouse_genomes_project 3 99516903 99524996 - MGP_C57BL6NJ_P0062828 Bnipl protein_coding protein_coding MGP_C57BL6NJ_T0062829.1 MGP_C57BL6NJ_G0027997.1 mouse_genomes_project 3 99519058 99522427 - Bnipl protein_coding retained_intron MGP_C57BL6NJ_T0061531.1 MGP_C57BL6NJ_G0027696.1 mouse_genomes_project 3 68580931 68590508 - MGP_C57BL6NJ_P0061531 Shox2 protein_coding protein_coding MGP_C57BL6NJ_T0061532.1 MGP_C57BL6NJ_G0027696.1 mouse_genomes_project 3 68580986 68590961 - MGP_C57BL6NJ_P0061532 Shox2 protein_coding protein_coding MGP_C57BL6NJ_T0061533.1 MGP_C57BL6NJ_G0027696.1 mouse_genomes_project 3 68581984 68587652 - MGP_C57BL6NJ_P0061533 Shox2 protein_coding protein_coding MGP_C57BL6NJ_T0061534.1 MGP_C57BL6NJ_G0027696.1 mouse_genomes_project 3 68582463 68590331 - MGP_C57BL6NJ_P0061534 Shox2 protein_coding protein_coding MGP_C57BL6NJ_T0061535.1 MGP_C57BL6NJ_G0027696.1 mouse_genomes_project 3 68583102 68588017 - MGP_C57BL6NJ_P0061535 Shox2 protein_coding protein_coding MGP_C57BL6NJ_T0061707.1 MGP_C57BL6NJ_G0027737.1 mouse_genomes_project 3 82643646 82709665 + MGP_C57BL6NJ_P0061707 Fam198b protein_coding protein_coding MGP_C57BL6NJ_T0061708.1 MGP_C57BL6NJ_G0027737.1 mouse_genomes_project 3 82643710 82698907 + MGP_C57BL6NJ_P0061708 Fam198b protein_coding protein_coding MGP_C57BL6NJ_T0061709.1 MGP_C57BL6NJ_G0027737.1 mouse_genomes_project 3 82644044 82645343 + MGP_C57BL6NJ_P0061709 Fam198b protein_coding protein_coding MGP_C57BL6NJ_T0061710.1 MGP_C57BL6NJ_G0027737.1 mouse_genomes_project 3 82645029 82709663 + MGP_C57BL6NJ_P0061710 Fam198b protein_coding protein_coding MGP_C57BL6NJ_T0061711.1 MGP_C57BL6NJ_G0027737.1 mouse_genomes_project 3 82645155 82648745 + Fam198b protein_coding retained_intron MGP_C57BL6NJ_T0001244.1 MGP_C57BL6NJ_G0001147.1 mouse_genomes_project 3 8426661 8428358 - TEC TEC MGP_C57BL6NJ_T0014263.1 MGP_C57BL6NJ_G0012308.1 mouse_genomes_project 3 11698969 11700326 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007801.1 MGP_C57BL6NJ_G0006379.1 mouse_genomes_project 3 100769874 100772775 + lincRNA lincRNA MGP_C57BL6NJ_T0063987.1 MGP_C57BL6NJ_G0028256.1 mouse_genomes_project 3 129334364 129360645 - MGP_C57BL6NJ_P0063987 Fnbp1l protein_coding protein_coding MGP_C57BL6NJ_T0063988.1 MGP_C57BL6NJ_G0028256.1 mouse_genomes_project 3 129334370 129416995 - MGP_C57BL6NJ_P0063988 Fnbp1l protein_coding protein_coding MGP_C57BL6NJ_T0063989.1 MGP_C57BL6NJ_G0028256.1 mouse_genomes_project 3 129337746 129416028 - MGP_C57BL6NJ_P0063989 Fnbp1l protein_coding protein_coding MGP_C57BL6NJ_T0063990.1 MGP_C57BL6NJ_G0028256.1 mouse_genomes_project 3 129343709 129350754 - Fnbp1l protein_coding retained_intron MGP_C57BL6NJ_T0063991.1 MGP_C57BL6NJ_G0028256.1 mouse_genomes_project 3 129354672 129356008 - Fnbp1l protein_coding retained_intron MGP_C57BL6NJ_T0018484.1 MGP_C57BL6NJ_G0015921.1 mouse_genomes_project 3 156791752 156804588 + Gm43574 processed_transcript processed_transcript MGP_C57BL6NJ_T0010753.1 MGP_C57BL6NJ_G0008838.1 mouse_genomes_project 3 70781479 70781543 + Mir15b miRNA miRNA MGP_C57BL6NJ_T0007662.1 MGP_C57BL6NJ_G0006278.1 mouse_genomes_project 3 33550637 33613833 - Gm38505 lincRNA lincRNA MGP_C57BL6NJ_T0004553.1 MGP_C57BL6NJ_G0003966.1 mouse_genomes_project 3 153929031 153931060 - 9530034A14Rik antisense antisense MGP_C57BL6NJ_T0099423.1 MGP_C57BL6NJ_G0037480.1 mouse_genomes_project 3 109741541 109743823 - A530041M06Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0001354.1 MGP_C57BL6NJ_G0001255.1 mouse_genomes_project 3 58527456 58531411 - TEC TEC MGP_C57BL6NJ_T0001401.1 MGP_C57BL6NJ_G0001302.1 mouse_genomes_project 3 100888614 100891467 - TEC TEC MGP_C57BL6NJ_T0014230.1 MGP_C57BL6NJ_G0012275.1 mouse_genomes_project 3 2130672 2131638 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004413.1 MGP_C57BL6NJ_G0003874.1 mouse_genomes_project 3 82618329 82645906 - Gm36569 antisense antisense MGP_C57BL6NJ_T0004366.1 MGP_C57BL6NJ_G0003838.1 mouse_genomes_project 3 31620408 31620950 - Gm37592 antisense antisense MGP_C57BL6NJ_T0062191.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743617 92757237 + MGP_C57BL6NJ_P0062191 Clk2 protein_coding protein_coding MGP_C57BL6NJ_T0062192.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743639 92746027 + MGP_C57BL6NJ_P0062192 Clk2 protein_coding protein_coding MGP_C57BL6NJ_T0062193.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743640 92757237 + MGP_C57BL6NJ_P0062193 Clk2 protein_coding protein_coding MGP_C57BL6NJ_T0062194.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743641 92757235 + Clk2 protein_coding retained_intron MGP_C57BL6NJ_T0062195.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743641 92753773 + MGP_C57BL6NJ_P0062195 Clk2 protein_coding protein_coding MGP_C57BL6NJ_T0062196.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743662 92757237 + MGP_C57BL6NJ_P0062196 Clk2 protein_coding protein_coding MGP_C57BL6NJ_T0062197.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92743801 92757237 + MGP_C57BL6NJ_P0062197 Clk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062198.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92745986 92749232 + Clk2 protein_coding retained_intron MGP_C57BL6NJ_T0062199.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92752480 92756396 + Clk2 protein_coding retained_intron MGP_C57BL6NJ_T0062200.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92754270 92756063 + Clk2 protein_coding retained_intron MGP_C57BL6NJ_T0062201.1 MGP_C57BL6NJ_G0027837.1 mouse_genomes_project 3 92755350 92756287 + Clk2 protein_coding processed_transcript MGP_C57BL6NJ_T0010774.1 MGP_C57BL6NJ_G0008859.1 mouse_genomes_project 3 100588728 100588869 + Gm44492 miRNA miRNA MGP_C57BL6NJ_T0014439.1 MGP_C57BL6NJ_G0012484.1 mouse_genomes_project 3 69286867 69287815 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010770.1 MGP_C57BL6NJ_G0008855.1 mouse_genomes_project 3 97497034 97497143 - Gm22752 miRNA miRNA MGP_C57BL6NJ_T0014406.1 MGP_C57BL6NJ_G0012451.1 mouse_genomes_project 3 60450067 60451879 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007915.1 MGP_C57BL6NJ_G0006475.1 mouse_genomes_project 3 151942013 151962643 + Gm42703 lincRNA lincRNA MGP_C57BL6NJ_T0014643.1 MGP_C57BL6NJ_G0012688.1 mouse_genomes_project 3 130652865 130653466 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098866.1 MGP_C57BL6NJ_G0036930.1 mouse_genomes_project 3 92950967 92952237 + pseudogene pseudogene MGP_C57BL6NJ_T0099095.1 MGP_C57BL6NJ_G0037159.1 mouse_genomes_project 3 100910569 100910686 + Gm28001 rRNA rRNA MGP_C57BL6NJ_T0014455.1 MGP_C57BL6NJ_G0012500.1 mouse_genomes_project 3 71831436 71832310 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101611.1 MGP_C57BL6NJ_G0039657.1 mouse_genomes_project 3 126185258 126185389 - Gm23432 snoRNA snoRNA MGP_C57BL6NJ_T0004400.1 MGP_C57BL6NJ_G0003863.1 mouse_genomes_project 3 60004856 60008548 - Gm43570 antisense antisense MGP_C57BL6NJ_T0103092.1 MGP_C57BL6NJ_G0040886.1 mouse_genomes_project 3 97824155 98117971 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014506.1 MGP_C57BL6NJ_G0012551.1 mouse_genomes_project 3 91883639 91884099 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014566.1 MGP_C57BL6NJ_G0012611.1 mouse_genomes_project 3 107096499 107097193 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063655.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114046087 114070760 - MGP_C57BL6NJ_P0063655 Celsr2 protein_coding protein_coding MGP_C57BL6NJ_T0063656.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114047458 114054188 - MGP_C57BL6NJ_P0063656 Celsr2 protein_coding protein_coding MGP_C57BL6NJ_T0063657.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114047615 114048670 - Celsr2 protein_coding processed_transcript MGP_C57BL6NJ_T0063658.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114047836 114048761 - Celsr2 protein_coding retained_intron MGP_C57BL6NJ_T0063659.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114048771 114049539 - Celsr2 protein_coding retained_intron MGP_C57BL6NJ_T0063660.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114050796 114051730 - Celsr2 protein_coding retained_intron MGP_C57BL6NJ_T0063661.1 MGP_C57BL6NJ_G0028192.1 mouse_genomes_project 3 114056496 114057826 - Celsr2 protein_coding retained_intron MGP_C57BL6NJ_T0061528.1 MGP_C57BL6NJ_G0027695.1 mouse_genomes_project 3 67812390 67818286 + MGP_C57BL6NJ_P0061528 Ptx3 protein_coding protein_coding MGP_C57BL6NJ_T0061529.1 MGP_C57BL6NJ_G0027695.1 mouse_genomes_project 3 67812725 67813911 + Ptx3 protein_coding retained_intron MGP_C57BL6NJ_T0014531.1 MGP_C57BL6NJ_G0012576.1 mouse_genomes_project 3 98822742 98823115 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014270.1 MGP_C57BL6NJ_G0012315.1 mouse_genomes_project 3 12923559 12924543 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101590.1 MGP_C57BL6NJ_G0039636.1 mouse_genomes_project 3 90366563 90366695 + Gm24472 snoRNA snoRNA MGP_C57BL6NJ_T0061133.1 MGP_C57BL6NJ_G0027607.1 mouse_genomes_project 3 45372498 45377139 + MGP_C57BL6NJ_P0061133 Pcdh10 protein_coding protein_coding MGP_C57BL6NJ_T0061134.1 MGP_C57BL6NJ_G0027607.1 mouse_genomes_project 3 45372506 45396397 + MGP_C57BL6NJ_P0061134 Pcdh10 protein_coding protein_coding MGP_C57BL6NJ_T0061135.1 MGP_C57BL6NJ_G0027607.1 mouse_genomes_project 3 45372525 45433180 + MGP_C57BL6NJ_P0061135 Pcdh10 protein_coding protein_coding MGP_C57BL6NJ_T0061136.1 MGP_C57BL6NJ_G0027607.1 mouse_genomes_project 3 45372527 45420062 + MGP_C57BL6NJ_P0061136 Pcdh10 protein_coding protein_coding MGP_C57BL6NJ_T0061137.1 MGP_C57BL6NJ_G0027607.1 mouse_genomes_project 3 45376736 45430050 + Pcdh10 protein_coding processed_transcript MGP_C57BL6NJ_T0010799.1 MGP_C57BL6NJ_G0008884.1 mouse_genomes_project 3 146471321 146471386 + Mir1956 miRNA miRNA MGP_C57BL6NJ_T0060536.1 MGP_C57BL6NJ_G0027500.1 mouse_genomes_project 3 13476727 13570849 - MGP_C57BL6NJ_P0060536 protein_coding protein_coding MGP_C57BL6NJ_T0060537.1 MGP_C57BL6NJ_G0027500.1 mouse_genomes_project 3 13525835 13570888 - protein_coding retained_intron MGP_C57BL6NJ_T0010804.1 MGP_C57BL6NJ_G0008889.1 mouse_genomes_project 3 162380162 162380274 + Gm27405 miRNA miRNA MGP_C57BL6NJ_T0001251.1 MGP_C57BL6NJ_G0001154.1 mouse_genomes_project 3 21164473 21164724 + TEC TEC MGP_C57BL6NJ_T0060770.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29919141 29991561 - MGP_C57BL6NJ_P0060770 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060771.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29919294 29991565 - MGP_C57BL6NJ_P0060771 Phc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060772.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29922610 29988073 - MGP_C57BL6NJ_P0060772 Phc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060773.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29926554 29991565 - MGP_C57BL6NJ_P0060773 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060774.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29926755 29991565 - MGP_C57BL6NJ_P0060774 Phc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060775.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29927081 29991559 - MGP_C57BL6NJ_P0060775 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060776.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29927081 29991559 - MGP_C57BL6NJ_P0060776 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060777.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29927081 29991559 - MGP_C57BL6NJ_P0060777 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060778.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29941670 29953871 - Phc3 protein_coding retained_intron MGP_C57BL6NJ_T0060779.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29949815 29991575 - MGP_C57BL6NJ_P0060779 Phc3 protein_coding protein_coding MGP_C57BL6NJ_T0060780.1 MGP_C57BL6NJ_G0027547.1 mouse_genomes_project 3 29980557 29988095 - Phc3 protein_coding retained_intron MGP_C57BL6NJ_T0103110.1 MGP_C57BL6NJ_G0040904.1 mouse_genomes_project 3 103388458 103395757 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010733.1 MGP_C57BL6NJ_G0008818.1 mouse_genomes_project 3 15965231 15965340 + Mir124a-2 miRNA miRNA MGP_C57BL6NJ_T0063810.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122499597 122662859 - MGP_C57BL6NJ_P0063810 Cdc14a protein_coding protein_coding MGP_C57BL6NJ_T0063811.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122499597 122662813 - MGP_C57BL6NJ_P0063811 Cdc14a protein_coding protein_coding MGP_C57BL6NJ_T0063812.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122552934 122661476 - MGP_C57BL6NJ_P0063812 Cdc14a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063813.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122558759 122662859 - Cdc14a protein_coding retained_intron MGP_C57BL6NJ_T0063814.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122637556 122661851 - Cdc14a protein_coding retained_intron MGP_C57BL6NJ_T0063815.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122640757 122642859 - Cdc14a protein_coding retained_intron MGP_C57BL6NJ_T0063816.1 MGP_C57BL6NJ_G0028225.1 mouse_genomes_project 3 122641478 122662722 - Cdc14a protein_coding processed_transcript MGP_C57BL6NJ_T0014328.1 MGP_C57BL6NJ_G0012373.1 mouse_genomes_project 3 36555998 36556695 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014393.1 MGP_C57BL6NJ_G0012438.1 mouse_genomes_project 3 58106499 58106752 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063204.1 MGP_C57BL6NJ_G0028086.1 mouse_genomes_project 3 105822109 105860045 - MGP_C57BL6NJ_P0063204 Ttf2 protein_coding protein_coding MGP_C57BL6NJ_T0063205.1 MGP_C57BL6NJ_G0028086.1 mouse_genomes_project 3 105825104 105832589 - Ttf2 protein_coding retained_intron MGP_C57BL6NJ_T0063206.1 MGP_C57BL6NJ_G0028086.1 mouse_genomes_project 3 105832581 105860045 - Ttf2 protein_coding retained_intron MGP_C57BL6NJ_T0063207.1 MGP_C57BL6NJ_G0028086.1 mouse_genomes_project 3 105833694 105838680 - MGP_C57BL6NJ_P0063207 Ttf2 protein_coding protein_coding MGP_C57BL6NJ_T0063208.1 MGP_C57BL6NJ_G0028086.1 mouse_genomes_project 3 105844837 105846073 - Ttf2 protein_coding retained_intron MGP_C57BL6NJ_T0064437.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048193 146064337 + MGP_C57BL6NJ_P0064437 Trmt10a protein_coding protein_coding MGP_C57BL6NJ_T0064438.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048214 146060564 + Trmt10a protein_coding retained_intron MGP_C57BL6NJ_T0064439.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048262 146064334 + MGP_C57BL6NJ_P0064439 Trmt10a protein_coding protein_coding MGP_C57BL6NJ_T0064440.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048544 146053108 + MGP_C57BL6NJ_P0064440 Trmt10a protein_coding protein_coding MGP_C57BL6NJ_T0064441.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048606 146053210 + MGP_C57BL6NJ_P0064441 Trmt10a protein_coding protein_coding MGP_C57BL6NJ_T0064442.1 MGP_C57BL6NJ_G0028338.1 mouse_genomes_project 3 146048655 146055222 + MGP_C57BL6NJ_P0064442 Trmt10a protein_coding protein_coding MGP_C57BL6NJ_T0014238.1 MGP_C57BL6NJ_G0012283.1 mouse_genomes_project 3 4826451 4827470 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060546.1 MGP_C57BL6NJ_G0027501.1 mouse_genomes_project 3 13988652 14049090 - MGP_C57BL6NJ_P0060546 Gm5150 protein_coding protein_coding MGP_C57BL6NJ_T0060547.1 MGP_C57BL6NJ_G0027501.1 mouse_genomes_project 3 13989852 14048985 - MGP_C57BL6NJ_P0060547 Gm5150 protein_coding protein_coding MGP_C57BL6NJ_T0062893.1 MGP_C57BL6NJ_G0028009.1 mouse_genomes_project 3 99975786 99980175 + MGP_C57BL6NJ_P0062893 Mcl1 protein_coding protein_coding MGP_C57BL6NJ_T0062894.1 MGP_C57BL6NJ_G0028009.1 mouse_genomes_project 3 99975855 99977822 + MGP_C57BL6NJ_P0062894 Mcl1 protein_coding protein_coding MGP_C57BL6NJ_T0063539.1 MGP_C57BL6NJ_G0028163.1 mouse_genomes_project 3 112885809 112894097 - MGP_C57BL6NJ_P0063539 Rbm15 protein_coding protein_coding MGP_C57BL6NJ_T0063540.1 MGP_C57BL6NJ_G0028163.1 mouse_genomes_project 3 112887519 112893525 - Rbm15 protein_coding retained_intron MGP_C57BL6NJ_T0063164.1 MGP_C57BL6NJ_G0028075.1 mouse_genomes_project 3 103611683 103623201 - MGP_C57BL6NJ_P0063164 Hsd3b1 protein_coding protein_coding MGP_C57BL6NJ_T0063165.1 MGP_C57BL6NJ_G0028075.1 mouse_genomes_project 3 103611685 103623201 - MGP_C57BL6NJ_P0063165 Hsd3b1 protein_coding protein_coding MGP_C57BL6NJ_T0061738.1 MGP_C57BL6NJ_G0027744.1 mouse_genomes_project 3 84933784 84981005 - MGP_C57BL6NJ_P0061738 Gucy1b3 protein_coding protein_coding MGP_C57BL6NJ_T0061739.1 MGP_C57BL6NJ_G0027744.1 mouse_genomes_project 3 84936098 84937110 - Gucy1b3 protein_coding retained_intron MGP_C57BL6NJ_T0061740.1 MGP_C57BL6NJ_G0027744.1 mouse_genomes_project 3 84952830 84981104 - Gucy1b3 protein_coding processed_transcript MGP_C57BL6NJ_T0010787.1 MGP_C57BL6NJ_G0008872.1 mouse_genomes_project 3 134655647 134655776 + Gm44494 miRNA miRNA MGP_C57BL6NJ_T0014546.1 MGP_C57BL6NJ_G0012591.1 mouse_genomes_project 3 101660719 101661322 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011793.1 MGP_C57BL6NJ_G0009878.1 mouse_genomes_project 3 17604867 17605179 + Gm22282 misc_RNA misc_RNA MGP_C57BL6NJ_T0101595.1 MGP_C57BL6NJ_G0039641.1 mouse_genomes_project 3 93804189 93804321 + Gm23723 snoRNA snoRNA MGP_C57BL6NJ_T0061296.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55922287 55961166 + MGP_C57BL6NJ_P0061296 Ccdc169 protein_coding protein_coding MGP_C57BL6NJ_T0061297.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55924978 55957755 + MGP_C57BL6NJ_P0061297 Ccdc169 protein_coding protein_coding MGP_C57BL6NJ_T0061298.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55924978 55956703 + MGP_C57BL6NJ_P0061298 Ccdc169 protein_coding protein_coding MGP_C57BL6NJ_T0061299.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55924995 55942016 + MGP_C57BL6NJ_P0061299 Ccdc169 protein_coding protein_coding MGP_C57BL6NJ_T0061300.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55927228 55957809 + MGP_C57BL6NJ_P0061300 Ccdc169 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061301.1 MGP_C57BL6NJ_G0027640.1 mouse_genomes_project 3 55927228 55957809 + MGP_C57BL6NJ_P0061301 Ccdc169 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061361.1 MGP_C57BL6NJ_G0027653.1 mouse_genomes_project 3 59357395 59410187 + MGP_C57BL6NJ_P0061361 Tsc22d2 protein_coding protein_coding MGP_C57BL6NJ_T0061362.1 MGP_C57BL6NJ_G0027653.1 mouse_genomes_project 3 59357400 59405124 + MGP_C57BL6NJ_P0061362 Tsc22d2 protein_coding protein_coding MGP_C57BL6NJ_T0061363.1 MGP_C57BL6NJ_G0027653.1 mouse_genomes_project 3 59358558 59361580 + Tsc22d2 protein_coding retained_intron MGP_C57BL6NJ_T0061364.1 MGP_C57BL6NJ_G0027653.1 mouse_genomes_project 3 59360164 59403713 + MGP_C57BL6NJ_P0061364 Tsc22d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001536.1 MGP_C57BL6NJ_G0001436.1 mouse_genomes_project 3 167654099 167655524 + TEC TEC MGP_C57BL6NJ_T0014220.1 MGP_C57BL6NJ_G0012265.1 mouse_genomes_project 3 1071397 1071716 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064504.1 MGP_C57BL6NJ_G0028352.1 mouse_genomes_project 3 150056345 150216501 - MGP_C57BL6NJ_P0064504 Bmpr1b protein_coding protein_coding MGP_C57BL6NJ_T0064505.1 MGP_C57BL6NJ_G0028352.1 mouse_genomes_project 3 150057311 150157724 - MGP_C57BL6NJ_P0064505 Bmpr1b protein_coding protein_coding MGP_C57BL6NJ_T0064506.1 MGP_C57BL6NJ_G0028352.1 mouse_genomes_project 3 150061018 150157709 - MGP_C57BL6NJ_P0064506 Bmpr1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064507.1 MGP_C57BL6NJ_G0028352.1 mouse_genomes_project 3 150061065 150403134 - MGP_C57BL6NJ_P0064507 Bmpr1b protein_coding protein_coding MGP_C57BL6NJ_T0064508.1 MGP_C57BL6NJ_G0028352.1 mouse_genomes_project 3 150061066 150403346 - MGP_C57BL6NJ_P0064508 Bmpr1b protein_coding protein_coding MGP_C57BL6NJ_T0001375.1 MGP_C57BL6NJ_G0001276.1 mouse_genomes_project 3 78060972 78066429 + TEC TEC MGP_C57BL6NJ_T0004395.1 MGP_C57BL6NJ_G0003860.1 mouse_genomes_project 3 55814928 55860093 + 4931419H13Rik antisense antisense MGP_C57BL6NJ_T0060555.1 MGP_C57BL6NJ_G0027506.1 mouse_genomes_project 3 16785947 16787549 + MGP_C57BL6NJ_P0060555 protein_coding protein_coding MGP_C57BL6NJ_T0001337.1 MGP_C57BL6NJ_G0001238.1 mouse_genomes_project 3 52598386 52600185 - TEC TEC MGP_C57BL6NJ_T0014582.1 MGP_C57BL6NJ_G0012627.1 mouse_genomes_project 3 111496150 111496466 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014549.1 MGP_C57BL6NJ_G0012594.1 mouse_genomes_project 3 103604727 103604913 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007931.1 MGP_C57BL6NJ_G0006488.1 mouse_genomes_project 3 155691565 155723722 + Gm29771 lincRNA lincRNA MGP_C57BL6NJ_T0014636.1 MGP_C57BL6NJ_G0012681.1 mouse_genomes_project 3 128938057 128939551 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014320.1 MGP_C57BL6NJ_G0012365.1 mouse_genomes_project 3 35251828 35252817 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010745.1 MGP_C57BL6NJ_G0008830.1 mouse_genomes_project 3 34671209 34671301 + Gm25442 miRNA miRNA MGP_C57BL6NJ_T0014379.1 MGP_C57BL6NJ_G0012424.1 mouse_genomes_project 3 52065582 52065895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062564.1 MGP_C57BL6NJ_G0027908.1 mouse_genomes_project 3 96316199 96317933 + MGP_C57BL6NJ_P0062564 Sprr2d protein_coding protein_coding MGP_C57BL6NJ_T0064539.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 150977498 151023784 + MGP_C57BL6NJ_P0064539 Kyat3 protein_coding protein_coding MGP_C57BL6NJ_T0064540.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 150977527 151026127 + MGP_C57BL6NJ_P0064540 Kyat3 protein_coding protein_coding MGP_C57BL6NJ_T0064541.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 150977533 151003267 + MGP_C57BL6NJ_P0064541 Kyat3 protein_coding protein_coding MGP_C57BL6NJ_T0064542.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 150977541 151023595 + MGP_C57BL6NJ_P0064542 Kyat3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064543.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 151000182 151008357 + Kyat3 protein_coding processed_transcript MGP_C57BL6NJ_T0064544.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 151005459 151007420 + Kyat3 protein_coding retained_intron MGP_C57BL6NJ_T0064545.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 151015476 151020203 + Kyat3 protein_coding retained_intron MGP_C57BL6NJ_T0064546.1 MGP_C57BL6NJ_G0028359.1 mouse_genomes_project 3 151017767 151023593 + Kyat3 protein_coding processed_transcript MGP_C57BL6NJ_T0007743.1 MGP_C57BL6NJ_G0006338.1 mouse_genomes_project 3 75346951 75489622 + lincRNA lincRNA MGP_C57BL6NJ_T0007744.1 MGP_C57BL6NJ_G0006338.1 mouse_genomes_project 3 75346986 75915722 + lincRNA lincRNA MGP_C57BL6NJ_T0060796.1 MGP_C57BL6NJ_G0027552.1 mouse_genomes_project 3 30997963 31298275 + MGP_C57BL6NJ_P0060796 Kcnmb2 protein_coding protein_coding MGP_C57BL6NJ_T0060797.1 MGP_C57BL6NJ_G0027552.1 mouse_genomes_project 3 31256679 31296867 + MGP_C57BL6NJ_P0060797 Kcnmb2 protein_coding protein_coding MGP_C57BL6NJ_T0014447.1 MGP_C57BL6NJ_G0012492.1 mouse_genomes_project 3 70664317 70664624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061336.1 MGP_C57BL6NJ_G0027647.1 mouse_genomes_project 3 58298555 58314854 + MGP_C57BL6NJ_P0061336 Tm4sf4 protein_coding protein_coding MGP_C57BL6NJ_T0014638.1 MGP_C57BL6NJ_G0012683.1 mouse_genomes_project 3 129690495 129690955 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063678.1 MGP_C57BL6NJ_G0028197.1 mouse_genomes_project 3 114235606 114245264 + Taf13 protein_coding processed_transcript MGP_C57BL6NJ_T0063679.1 MGP_C57BL6NJ_G0028197.1 mouse_genomes_project 3 114235607 114247130 + Taf13 protein_coding processed_transcript MGP_C57BL6NJ_T0063680.1 MGP_C57BL6NJ_G0028197.1 mouse_genomes_project 3 114235607 114248283 + MGP_C57BL6NJ_P0063680 Taf13 protein_coding protein_coding MGP_C57BL6NJ_T0063681.1 MGP_C57BL6NJ_G0028197.1 mouse_genomes_project 3 114235619 114237214 + Taf13 protein_coding retained_intron MGP_C57BL6NJ_T0001393.1 MGP_C57BL6NJ_G0001294.1 mouse_genomes_project 3 97366460 97369004 + TEC TEC MGP_C57BL6NJ_T0062619.1 MGP_C57BL6NJ_G0027951.1 mouse_genomes_project 3 97504608 97513017 + MGP_C57BL6NJ_P0062619 Tchh protein_coding protein_coding MGP_C57BL6NJ_T0063764.1 MGP_C57BL6NJ_G0028214.1 mouse_genomes_project 3 119519195 119529844 - MGP_C57BL6NJ_P0063764 protein_coding protein_coding MGP_C57BL6NJ_T0004384.1 MGP_C57BL6NJ_G0003850.1 mouse_genomes_project 3 38583890 38584970 - Gm43539 antisense antisense MGP_C57BL6NJ_T0061857.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90068011 90206433 - MGP_C57BL6NJ_P0061857 Dclk2 protein_coding protein_coding MGP_C57BL6NJ_T0061858.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90068013 90206242 - MGP_C57BL6NJ_P0061858 Dclk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061859.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90068013 90206906 - MGP_C57BL6NJ_P0061859 Dclk2 protein_coding protein_coding MGP_C57BL6NJ_T0061860.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90068019 90206389 - MGP_C57BL6NJ_P0061860 Dclk2 protein_coding protein_coding MGP_C57BL6NJ_T0061861.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90069072 90206224 - MGP_C57BL6NJ_P0061861 Dclk2 protein_coding protein_coding MGP_C57BL6NJ_T0061862.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90069101 90074176 - Dclk2 protein_coding processed_transcript MGP_C57BL6NJ_T0061863.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90069209 90081021 - Dclk2 protein_coding processed_transcript MGP_C57BL6NJ_T0061864.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90071206 90079873 - Dclk2 protein_coding processed_transcript MGP_C57BL6NJ_T0061865.1 MGP_C57BL6NJ_G0027775.1 mouse_genomes_project 3 90080781 90206428 - MGP_C57BL6NJ_P0061865 Dclk2 protein_coding protein_coding MGP_C57BL6NJ_T0101560.1 MGP_C57BL6NJ_G0039606.1 mouse_genomes_project 3 25766201 25766315 + Gm25152 snoRNA snoRNA MGP_C57BL6NJ_T0063475.1 MGP_C57BL6NJ_G0028143.1 mouse_genomes_project 3 111391936 111411560 - MGP_C57BL6NJ_P0063475 Pifo protein_coding protein_coding MGP_C57BL6NJ_T0063476.1 MGP_C57BL6NJ_G0028143.1 mouse_genomes_project 3 111391945 111396492 - MGP_C57BL6NJ_P0063476 Pifo protein_coding protein_coding MGP_C57BL6NJ_T0014324.1 MGP_C57BL6NJ_G0012369.1 mouse_genomes_project 3 35865444 35865991 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061929.1 MGP_C57BL6NJ_G0027790.1 mouse_genomes_project 3 91219551 91250777 - MGP_C57BL6NJ_P0061929 Prcc protein_coding protein_coding MGP_C57BL6NJ_T0014697.1 MGP_C57BL6NJ_G0012742.1 mouse_genomes_project 3 148728112 148728365 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100269.1 MGP_C57BL6NJ_G0038315.1 mouse_genomes_project 3 82588685 82588788 + Gm26420 snRNA snRNA MGP_C57BL6NJ_T0014401.1 MGP_C57BL6NJ_G0012446.1 mouse_genomes_project 3 58868229 58869408 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063172.1 MGP_C57BL6NJ_G0028078.1 mouse_genomes_project 3 104000188 104081688 + MGP_C57BL6NJ_P0063172 Tbx15 protein_coding protein_coding MGP_C57BL6NJ_T0063173.1 MGP_C57BL6NJ_G0028078.1 mouse_genomes_project 3 104015321 104129143 + MGP_C57BL6NJ_P0063173 Tbx15 protein_coding protein_coding MGP_C57BL6NJ_T0063174.1 MGP_C57BL6NJ_G0028078.1 mouse_genomes_project 3 104060985 104084863 + MGP_C57BL6NJ_P0063174 Tbx15 protein_coding protein_coding MGP_C57BL6NJ_T0004416.1 MGP_C57BL6NJ_G0003877.1 mouse_genomes_project 3 85815669 85886767 + Rbm46os antisense antisense MGP_C57BL6NJ_T0004417.1 MGP_C57BL6NJ_G0003877.1 mouse_genomes_project 3 85815669 85888686 + Rbm46os antisense antisense MGP_C57BL6NJ_T0004418.1 MGP_C57BL6NJ_G0003877.1 mouse_genomes_project 3 85815710 85886802 + Rbm46os antisense antisense MGP_C57BL6NJ_T0004419.1 MGP_C57BL6NJ_G0003877.1 mouse_genomes_project 3 85846007 85889331 + Rbm46os antisense antisense MGP_C57BL6NJ_T0062598.1 MGP_C57BL6NJ_G0027938.1 mouse_genomes_project 3 96886396 96888254 - MGP_C57BL6NJ_P0062598 2310050C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0063817.1 MGP_C57BL6NJ_G0028226.1 mouse_genomes_project 3 122732650 122751863 - MGP_C57BL6NJ_P0063817 Rtca protein_coding protein_coding MGP_C57BL6NJ_T0063818.1 MGP_C57BL6NJ_G0028226.1 mouse_genomes_project 3 122732927 122739620 - Rtca protein_coding retained_intron MGP_C57BL6NJ_T0063819.1 MGP_C57BL6NJ_G0028226.1 mouse_genomes_project 3 122737805 122751679 - MGP_C57BL6NJ_P0063819 Rtca protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063820.1 MGP_C57BL6NJ_G0028226.1 mouse_genomes_project 3 122739345 122751720 - MGP_C57BL6NJ_P0063820 Rtca protein_coding protein_coding MGP_C57BL6NJ_T0063821.1 MGP_C57BL6NJ_G0028226.1 mouse_genomes_project 3 122743200 122751788 - MGP_C57BL6NJ_P0063821 Rtca protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061261.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55465006 55471740 - MGP_C57BL6NJ_P0061261 Exosc8 protein_coding protein_coding MGP_C57BL6NJ_T0061262.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55465009 55465787 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061263.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55465010 55471384 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061264.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55466169 55471149 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061265.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55466181 55470660 - MGP_C57BL6NJ_P0061265 Exosc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061266.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55467626 55471714 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061267.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55468321 55471393 - MGP_C57BL6NJ_P0061267 Exosc8 protein_coding protein_coding MGP_C57BL6NJ_T0061268.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55468470 55470684 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061269.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55468480 55469552 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061270.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55469929 55471382 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0061271.1 MGP_C57BL6NJ_G0027633.1 mouse_genomes_project 3 55470289 55471382 - Exosc8 protein_coding retained_intron MGP_C57BL6NJ_T0007736.1 MGP_C57BL6NJ_G0006331.1 mouse_genomes_project 3 64807365 64810133 - lincRNA lincRNA MGP_C57BL6NJ_T0014413.1 MGP_C57BL6NJ_G0012458.1 mouse_genomes_project 3 61933872 61934030 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061480.1 MGP_C57BL6NJ_G0027682.1 mouse_genomes_project 3 65257385 65276862 - MGP_C57BL6NJ_P0061480 E130311K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0061481.1 MGP_C57BL6NJ_G0027682.1 mouse_genomes_project 3 65271076 65276781 - E130311K13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0061482.1 MGP_C57BL6NJ_G0027682.1 mouse_genomes_project 3 65274191 65276781 - E130311K13Rik protein_coding retained_intron MGP_C57BL6NJ_T0001310.1 MGP_C57BL6NJ_G0001213.1 mouse_genomes_project 3 51073964 51078029 - TEC TEC MGP_C57BL6NJ_T0061887.1 MGP_C57BL6NJ_G0027783.1 mouse_genomes_project 3 90856849 90871599 + MGP_C57BL6NJ_P0061887 Etv3 protein_coding protein_coding MGP_C57BL6NJ_T0061888.1 MGP_C57BL6NJ_G0027783.1 mouse_genomes_project 3 90857020 90871585 + MGP_C57BL6NJ_P0061888 Etv3 protein_coding protein_coding MGP_C57BL6NJ_T0061889.1 MGP_C57BL6NJ_G0027783.1 mouse_genomes_project 3 90857049 90871599 + Etv3 protein_coding retained_intron MGP_C57BL6NJ_T0061890.1 MGP_C57BL6NJ_G0027783.1 mouse_genomes_project 3 90857056 90862474 + MGP_C57BL6NJ_P0061890 Etv3 protein_coding protein_coding MGP_C57BL6NJ_T0061891.1 MGP_C57BL6NJ_G0027783.1 mouse_genomes_project 3 90857060 90862477 + Etv3 protein_coding retained_intron MGP_C57BL6NJ_T0014715.1 MGP_C57BL6NJ_G0012760.1 mouse_genomes_project 3 155793064 155793515 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060627.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469051 20620351 + MGP_C57BL6NJ_P0060627 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060628.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469126 20616508 + MGP_C57BL6NJ_P0060628 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060629.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469155 20586892 + Tbl1xr1 protein_coding processed_transcript MGP_C57BL6NJ_T0060630.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469231 20591803 + MGP_C57BL6NJ_P0060630 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060631.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469280 20588182 + Tbl1xr1 protein_coding processed_transcript MGP_C57BL6NJ_T0060632.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469335 20586860 + MGP_C57BL6NJ_P0060632 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060633.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20469683 20619050 + MGP_C57BL6NJ_P0060633 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060634.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20508449 20615725 + MGP_C57BL6NJ_P0060634 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060635.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20534360 20588175 + MGP_C57BL6NJ_P0060635 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0060636.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20544028 20616832 + MGP_C57BL6NJ_P0060636 Tbl1xr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060637.1 MGP_C57BL6NJ_G0027521.1 mouse_genomes_project 3 20606948 20614336 + MGP_C57BL6NJ_P0060637 Tbl1xr1 protein_coding protein_coding MGP_C57BL6NJ_T0001523.1 MGP_C57BL6NJ_G0001423.1 mouse_genomes_project 3 163413481 163415485 - TEC TEC MGP_C57BL6NJ_T0060472.1 MGP_C57BL6NJ_G0027479.1 mouse_genomes_project 3 7796317 7799919 - MGP_C57BL6NJ_P0060472 protein_coding protein_coding MGP_C57BL6NJ_T0060473.1 MGP_C57BL6NJ_G0027479.1 mouse_genomes_project 3 7796319 7799980 - MGP_C57BL6NJ_P0060473 protein_coding protein_coding MGP_C57BL6NJ_T0060474.1 MGP_C57BL6NJ_G0027479.1 mouse_genomes_project 3 7796322 7799919 - MGP_C57BL6NJ_P0060474 protein_coding protein_coding MGP_C57BL6NJ_T0014618.1 MGP_C57BL6NJ_G0012663.1 mouse_genomes_project 3 122775397 122775839 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101601.1 MGP_C57BL6NJ_G0039647.1 mouse_genomes_project 3 105146945 105147022 + Gm25802 snoRNA snoRNA MGP_C57BL6NJ_T0007834.1 MGP_C57BL6NJ_G0006407.1 mouse_genomes_project 3 113804705 113826422 + Gm12524 lincRNA lincRNA MGP_C57BL6NJ_T0007762.1 MGP_C57BL6NJ_G0006353.1 mouse_genomes_project 3 85684034 85689257 + Gm30043 lincRNA lincRNA MGP_C57BL6NJ_T0014708.1 MGP_C57BL6NJ_G0012753.1 mouse_genomes_project 3 153129038 153129605 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063248.1 MGP_C57BL6NJ_G0028097.1 mouse_genomes_project 3 107528887 107579654 + MGP_C57BL6NJ_P0063248 Ngf protein_coding protein_coding MGP_C57BL6NJ_T0063249.1 MGP_C57BL6NJ_G0028097.1 mouse_genomes_project 3 107528896 107568648 + MGP_C57BL6NJ_P0063249 Ngf protein_coding protein_coding MGP_C57BL6NJ_T0063250.1 MGP_C57BL6NJ_G0028097.1 mouse_genomes_project 3 107528896 107579819 + MGP_C57BL6NJ_P0063250 Ngf protein_coding protein_coding MGP_C57BL6NJ_T0063251.1 MGP_C57BL6NJ_G0028097.1 mouse_genomes_project 3 107547650 107579801 + MGP_C57BL6NJ_P0063251 Ngf protein_coding protein_coding MGP_C57BL6NJ_T0007805.1 MGP_C57BL6NJ_G0006383.1 mouse_genomes_project 3 102537888 102546747 - Gm15999 lincRNA lincRNA MGP_C57BL6NJ_T0014703.1 MGP_C57BL6NJ_G0012748.1 mouse_genomes_project 3 150934948 150936010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014683.1 MGP_C57BL6NJ_G0012728.1 mouse_genomes_project 3 144777794 144778110 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010761.1 MGP_C57BL6NJ_G0008846.1 mouse_genomes_project 3 91613292 91613381 + Mir9-1 miRNA miRNA MGP_C57BL6NJ_T0001427.1 MGP_C57BL6NJ_G0001328.1 mouse_genomes_project 3 124950024 124952185 + TEC TEC MGP_C57BL6NJ_T0060759.1 MGP_C57BL6NJ_G0027545.1 mouse_genomes_project 3 29804285 29832595 + MGP_C57BL6NJ_P0060759 Sec62 protein_coding protein_coding MGP_C57BL6NJ_T0060760.1 MGP_C57BL6NJ_G0027545.1 mouse_genomes_project 3 29804746 29812952 + Sec62 protein_coding retained_intron MGP_C57BL6NJ_T0060761.1 MGP_C57BL6NJ_G0027545.1 mouse_genomes_project 3 29830182 29831364 + Sec62 protein_coding processed_transcript MGP_C57BL6NJ_T0060460.1 MGP_C57BL6NJ_G0027474.1 mouse_genomes_project 3 6965182 7161798 - MGP_C57BL6NJ_P0060460 Zfp704 protein_coding protein_coding MGP_C57BL6NJ_T0060461.1 MGP_C57BL6NJ_G0027474.1 mouse_genomes_project 3 6976454 7113898 - MGP_C57BL6NJ_P0060461 Zfp704 protein_coding protein_coding MGP_C57BL6NJ_T0060462.1 MGP_C57BL6NJ_G0027474.1 mouse_genomes_project 3 6976858 6979199 - Zfp704 protein_coding retained_intron MGP_C57BL6NJ_T0004547.1 MGP_C57BL6NJ_G0003960.1 mouse_genomes_project 3 149669023 149676376 - Gm15688 antisense antisense MGP_C57BL6NJ_T0063676.1 MGP_C57BL6NJ_G0028196.1 mouse_genomes_project 3 114220341 114226384 - MGP_C57BL6NJ_P0063676 protein_coding protein_coding MGP_C57BL6NJ_T0063677.1 MGP_C57BL6NJ_G0028196.1 mouse_genomes_project 3 114220341 114226088 - MGP_C57BL6NJ_P0063677 protein_coding protein_coding MGP_C57BL6NJ_T0098867.1 MGP_C57BL6NJ_G0036931.1 mouse_genomes_project 3 162876625 162876707 + pseudogene pseudogene MGP_C57BL6NJ_T0099422.1 MGP_C57BL6NJ_G0037479.1 mouse_genomes_project 3 109711604 109717663 - Gm43696 sense_intronic sense_intronic MGP_C57BL6NJ_T0014486.1 MGP_C57BL6NJ_G0012531.1 mouse_genomes_project 3 82862214 82863292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060840.1 MGP_C57BL6NJ_G0027560.1 mouse_genomes_project 3 31854775 31868584 - MGP_C57BL6NJ_P0060840 Mrpl47 protein_coding protein_coding MGP_C57BL6NJ_T0060841.1 MGP_C57BL6NJ_G0027560.1 mouse_genomes_project 3 31856953 31862736 - Mrpl47 protein_coding processed_transcript MGP_C57BL6NJ_T0060842.1 MGP_C57BL6NJ_G0027560.1 mouse_genomes_project 3 31867537 31869040 - Mrpl47 protein_coding retained_intron MGP_C57BL6NJ_T0063636.1 MGP_C57BL6NJ_G0028187.1 mouse_genomes_project 3 113855345 113870522 - MGP_C57BL6NJ_P0063636 Sypl2 protein_coding protein_coding MGP_C57BL6NJ_T0063637.1 MGP_C57BL6NJ_G0028187.1 mouse_genomes_project 3 113861174 113870517 - Sypl2 protein_coding retained_intron MGP_C57BL6NJ_T0014432.1 MGP_C57BL6NJ_G0012477.1 mouse_genomes_project 3 67685998 67686257 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061217.1 MGP_C57BL6NJ_G0027624.1 mouse_genomes_project 3 54080749 54098770 + MGP_C57BL6NJ_P0061217 Proser1 protein_coding protein_coding MGP_C57BL6NJ_T0061218.1 MGP_C57BL6NJ_G0027624.1 mouse_genomes_project 3 54080890 54081830 + Proser1 protein_coding retained_intron MGP_C57BL6NJ_T0061219.1 MGP_C57BL6NJ_G0027624.1 mouse_genomes_project 3 54081015 54091251 + Proser1 protein_coding retained_intron MGP_C57BL6NJ_T0061220.1 MGP_C57BL6NJ_G0027624.1 mouse_genomes_project 3 54095146 54096935 + Proser1 protein_coding retained_intron MGP_C57BL6NJ_T0061280.1 MGP_C57BL6NJ_G0027637.1 mouse_genomes_project 3 55649373 55667212 - MGP_C57BL6NJ_P0061280 Sertm1 protein_coding protein_coding MGP_C57BL6NJ_T0061281.1 MGP_C57BL6NJ_G0027637.1 mouse_genomes_project 3 55649376 55668068 - MGP_C57BL6NJ_P0061281 Sertm1 protein_coding protein_coding MGP_C57BL6NJ_T0011803.1 MGP_C57BL6NJ_G0009888.1 mouse_genomes_project 3 81506730 81507073 + Gm24749 misc_RNA misc_RNA MGP_C57BL6NJ_T0061398.1 MGP_C57BL6NJ_G0027663.1 mouse_genomes_project 3 60196266 60197458 - Gpr87 protein_coding retained_intron MGP_C57BL6NJ_T0061399.1 MGP_C57BL6NJ_G0027663.1 mouse_genomes_project 3 60196266 60212448 - MGP_C57BL6NJ_P0061399 Gpr87 protein_coding protein_coding MGP_C57BL6NJ_T0061400.1 MGP_C57BL6NJ_G0027663.1 mouse_genomes_project 3 60196349 60197429 - MGP_C57BL6NJ_P0061400 Gpr87 protein_coding protein_coding MGP_C57BL6NJ_T0063747.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115535328 115902570 - MGP_C57BL6NJ_P0063747 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063748.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115535334 115903577 - MGP_C57BL6NJ_P0063748 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063749.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115536403 115903041 - MGP_C57BL6NJ_P0063749 Ntng1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063750.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063750 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063751.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063751 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063752.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063752 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063753.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063753 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063754.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063754 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063755.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115895057 - MGP_C57BL6NJ_P0063755 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0063756.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115537970 115903165 - MGP_C57BL6NJ_P0063756 Ntng1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063757.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115588387 115590689 - Ntng1 protein_coding retained_intron MGP_C57BL6NJ_T0063758.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115588387 115895017 - Ntng1 protein_coding retained_intron MGP_C57BL6NJ_T0063759.1 MGP_C57BL6NJ_G0028211.1 mouse_genomes_project 3 115903250 115903577 - MGP_C57BL6NJ_P0063759 Ntng1 protein_coding protein_coding MGP_C57BL6NJ_T0007898.1 MGP_C57BL6NJ_G0006460.1 mouse_genomes_project 3 145898365 145915406 + Gm19708 lincRNA lincRNA MGP_C57BL6NJ_T0014650.1 MGP_C57BL6NJ_G0012695.1 mouse_genomes_project 3 134689009 134689355 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004480.1 MGP_C57BL6NJ_G0003919.1 mouse_genomes_project 3 110802327 110813057 - Kcnd3os antisense antisense MGP_C57BL6NJ_T0004481.1 MGP_C57BL6NJ_G0003919.1 mouse_genomes_project 3 110809519 110814346 - Kcnd3os antisense antisense MGP_C57BL6NJ_T0062573.1 MGP_C57BL6NJ_G0027916.1 mouse_genomes_project 3 96421448 96423429 - MGP_C57BL6NJ_P0062573 Sprr1b protein_coding protein_coding MGP_C57BL6NJ_T0004505.1 MGP_C57BL6NJ_G0003930.1 mouse_genomes_project 3 122585894 122588680 + Gm29151 antisense antisense MGP_C57BL6NJ_T0004514.1 MGP_C57BL6NJ_G0003937.1 mouse_genomes_project 3 129693318 129757996 - 4933405D12Rik antisense antisense MGP_C57BL6NJ_T0004515.1 MGP_C57BL6NJ_G0003937.1 mouse_genomes_project 3 129715194 129757996 - 4933405D12Rik antisense antisense MGP_C57BL6NJ_T0063998.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129764359 129802537 - MGP_C57BL6NJ_P0063998 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063999.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129780070 129782501 - protein_coding retained_intron MGP_C57BL6NJ_T0064000.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129784170 129816775 - MGP_C57BL6NJ_P0064000 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064001.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129785373 129816958 - MGP_C57BL6NJ_P0064001 protein_coding protein_coding MGP_C57BL6NJ_T0064002.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129788298 129816956 - MGP_C57BL6NJ_P0064002 protein_coding protein_coding MGP_C57BL6NJ_T0064003.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129789851 129816962 - protein_coding retained_intron MGP_C57BL6NJ_T0064004.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129791704 129794100 - protein_coding retained_intron MGP_C57BL6NJ_T0064005.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129791747 129816923 - MGP_C57BL6NJ_P0064005 protein_coding protein_coding MGP_C57BL6NJ_T0064006.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129792411 129795818 - protein_coding retained_intron MGP_C57BL6NJ_T0064007.1 MGP_C57BL6NJ_G0028261.1 mouse_genomes_project 3 129800299 129816345 - protein_coding retained_intron MGP_C57BL6NJ_T0064034.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130396064 130557912 - MGP_C57BL6NJ_P0064034 Ndst3 protein_coding protein_coding MGP_C57BL6NJ_T0064035.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130396070 130578972 - MGP_C57BL6NJ_P0064035 Ndst3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064036.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130396072 130578972 - MGP_C57BL6NJ_P0064036 Ndst3 protein_coding protein_coding MGP_C57BL6NJ_T0064037.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130396073 130557995 - MGP_C57BL6NJ_P0064037 Ndst3 protein_coding protein_coding MGP_C57BL6NJ_T0064038.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130398463 130500279 - MGP_C57BL6NJ_P0064038 Ndst3 protein_coding protein_coding MGP_C57BL6NJ_T0064039.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130398592 130578399 - MGP_C57BL6NJ_P0064039 Ndst3 protein_coding protein_coding MGP_C57BL6NJ_T0064040.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130423901 130558180 - Ndst3 protein_coding retained_intron MGP_C57BL6NJ_T0064041.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130429463 130432933 - Ndst3 protein_coding retained_intron MGP_C57BL6NJ_T0064042.1 MGP_C57BL6NJ_G0028267.1 mouse_genomes_project 3 130429634 130449993 - Ndst3 protein_coding processed_transcript MGP_C57BL6NJ_T0103072.1 MGP_C57BL6NJ_G0040866.1 mouse_genomes_project 3 65407082 65409662 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0064431.1 MGP_C57BL6NJ_G0028336.1 mouse_genomes_project 3 145968033 145984488 + MGP_C57BL6NJ_P0064431 1110002E22Rik protein_coding protein_coding MGP_C57BL6NJ_T0064432.1 MGP_C57BL6NJ_G0028336.1 mouse_genomes_project 3 145974578 145980353 + 1110002E22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0061560.1 MGP_C57BL6NJ_G0027703.1 mouse_genomes_project 3 69571913 69749515 + MGP_C57BL6NJ_P0061560 Iqcj protein_coding protein_coding MGP_C57BL6NJ_T0061562.1 MGP_C57BL6NJ_G0027703.1 mouse_genomes_project 3 69572006 69757004 + MGP_C57BL6NJ_P0061562 Iqcj protein_coding unknown_likely_coding MGP_C57BL6NJ_T0001266.1 MGP_C57BL6NJ_G0001169.1 mouse_genomes_project 3 31473154 31474566 - TEC TEC MGP_C57BL6NJ_T0001487.1 MGP_C57BL6NJ_G0001387.1 mouse_genomes_project 3 138515571 138518103 - TEC TEC MGP_C57BL6NJ_T0014325.1 MGP_C57BL6NJ_G0012370.1 mouse_genomes_project 3 35988151 35988850 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007760.1 MGP_C57BL6NJ_G0006351.1 mouse_genomes_project 3 84601918 84604273 + Gm43346 lincRNA lincRNA MGP_C57BL6NJ_T0007709.1 MGP_C57BL6NJ_G0006311.1 mouse_genomes_project 3 51494816 51511017 - Gm29230 lincRNA lincRNA MGP_C57BL6NJ_T0064255.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012065 139098802 + MGP_C57BL6NJ_P0064255 Papss1 protein_coding protein_coding MGP_C57BL6NJ_T0064256.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012162 139098801 + MGP_C57BL6NJ_P0064256 Papss1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064257.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012193 139098801 + MGP_C57BL6NJ_P0064257 Papss1 protein_coding protein_coding MGP_C57BL6NJ_T0064258.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012194 139028789 + MGP_C57BL6NJ_P0064258 Papss1 protein_coding protein_coding MGP_C57BL6NJ_T0064259.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012196 139098802 + MGP_C57BL6NJ_P0064259 Papss1 protein_coding protein_coding MGP_C57BL6NJ_T0064260.1 MGP_C57BL6NJ_G0028303.1 mouse_genomes_project 3 139012232 139032564 + MGP_C57BL6NJ_P0064260 Papss1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064573.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152976751 153004559 + protein_coding processed_transcript MGP_C57BL6NJ_T0064574.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152976873 153004982 + MGP_C57BL6NJ_P0064574 protein_coding protein_coding MGP_C57BL6NJ_T0064575.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152977140 153004963 + MGP_C57BL6NJ_P0064575 protein_coding protein_coding MGP_C57BL6NJ_T0064576.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152977161 152979860 + protein_coding retained_intron MGP_C57BL6NJ_T0064577.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152984099 153002734 + MGP_C57BL6NJ_P0064577 protein_coding protein_coding MGP_C57BL6NJ_T0064578.1 MGP_C57BL6NJ_G0028364.1 mouse_genomes_project 3 152997726 152998892 + protein_coding retained_intron MGP_C57BL6NJ_T0063739.1 MGP_C57BL6NJ_G0028209.1 mouse_genomes_project 3 114826205 114870275 + MGP_C57BL6NJ_P0063739 Slc25a24 protein_coding protein_coding MGP_C57BL6NJ_T0063740.1 MGP_C57BL6NJ_G0028209.1 mouse_genomes_project 3 114826218 114860358 + MGP_C57BL6NJ_P0063740 Slc25a24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061401.1 MGP_C57BL6NJ_G0027664.1 mouse_genomes_project 3 60225235 60228226 - MGP_C57BL6NJ_P0061401 P2ry13 protein_coding protein_coding MGP_C57BL6NJ_T0014518.1 MGP_C57BL6NJ_G0012563.1 mouse_genomes_project 3 96460155 96460459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060970.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317649 36348620 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060971.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317651 36530786 + MGP_C57BL6NJ_P0060971 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060972.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317666 36347324 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060973.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317666 36408874 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060974.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317687 36530773 + MGP_C57BL6NJ_P0060974 4932438A13Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0060975.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36317701 36413630 + MGP_C57BL6NJ_P0060975 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060976.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36319014 36396061 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060977.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36325767 36530786 + MGP_C57BL6NJ_P0060977 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060978.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36325780 36347331 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060979.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36349097 36359762 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060980.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36359671 36413632 + MGP_C57BL6NJ_P0060980 4932438A13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060981.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36368058 36381285 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060982.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36411698 36413627 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060983.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36481478 36530768 + MGP_C57BL6NJ_P0060983 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060984.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36485869 36530769 + MGP_C57BL6NJ_P0060984 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060985.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36486000 36530767 + MGP_C57BL6NJ_P0060985 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060986.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36488796 36505383 + MGP_C57BL6NJ_P0060986 4932438A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0060987.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36494230 36499229 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060988.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36495553 36499459 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060989.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36499800 36513209 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060990.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36513191 36516249 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060991.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36513838 36516251 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0060992.1 MGP_C57BL6NJ_G0027582.1 mouse_genomes_project 3 36518349 36521099 + 4932438A13Rik protein_coding retained_intron MGP_C57BL6NJ_T0001396.1 MGP_C57BL6NJ_G0001297.1 mouse_genomes_project 3 99640515 99642235 + TEC TEC MGP_C57BL6NJ_T0101553.1 MGP_C57BL6NJ_G0039599.1 mouse_genomes_project 3 4325151 4325264 + Gm22074 snoRNA snoRNA MGP_C57BL6NJ_T0063737.1 MGP_C57BL6NJ_G0028208.1 mouse_genomes_project 3 114776177 114818378 + MGP_C57BL6NJ_P0063737 Slc25a54 protein_coding protein_coding MGP_C57BL6NJ_T0063738.1 MGP_C57BL6NJ_G0028208.1 mouse_genomes_project 3 114776207 114818273 + MGP_C57BL6NJ_P0063738 Slc25a54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001398.1 MGP_C57BL6NJ_G0001299.1 mouse_genomes_project 3 99946554 99958049 + TEC TEC MGP_C57BL6NJ_T0063713.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114532699 114573328 - MGP_C57BL6NJ_P0063713 Fndc7 protein_coding protein_coding MGP_C57BL6NJ_T0063714.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114532704 114537666 - Fndc7 protein_coding processed_transcript MGP_C57BL6NJ_T0063715.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114534344 114573630 - MGP_C57BL6NJ_P0063715 Fndc7 protein_coding protein_coding MGP_C57BL6NJ_T0063716.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114534361 114573437 - MGP_C57BL6NJ_P0063716 Fndc7 protein_coding protein_coding MGP_C57BL6NJ_T0063717.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114535109 114537662 - Fndc7 protein_coding processed_transcript MGP_C57BL6NJ_T0063718.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114542988 114551018 - Fndc7 protein_coding processed_transcript MGP_C57BL6NJ_T0063719.1 MGP_C57BL6NJ_G0028203.1 mouse_genomes_project 3 114549759 114562149 - Fndc7 protein_coding retained_intron MGP_C57BL6NJ_T0061775.1 MGP_C57BL6NJ_G0027756.1 mouse_genomes_project 3 86842476 86847972 - MGP_C57BL6NJ_P0061775 Tlr2 protein_coding protein_coding MGP_C57BL6NJ_T0014463.1 MGP_C57BL6NJ_G0012508.1 mouse_genomes_project 3 73959824 73960789 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001313.1 MGP_C57BL6NJ_G0001216.1 mouse_genomes_project 3 51343998 51346637 - TEC TEC MGP_C57BL6NJ_T0004466.1 MGP_C57BL6NJ_G0003910.1 mouse_genomes_project 3 104912362 104942515 - antisense antisense MGP_C57BL6NJ_T0004467.1 MGP_C57BL6NJ_G0003910.1 mouse_genomes_project 3 104914337 104942515 - antisense antisense MGP_C57BL6NJ_T0014304.1 MGP_C57BL6NJ_G0012349.1 mouse_genomes_project 3 26003912 26004181 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063109.1 MGP_C57BL6NJ_G0028058.1 mouse_genomes_project 3 101988616 101989579 - MGP_C57BL6NJ_P0063109 Olfr1402 protein_coding protein_coding MGP_C57BL6NJ_T0010793.1 MGP_C57BL6NJ_G0008878.1 mouse_genomes_project 3 137089662 137089771 - Gm24515 miRNA miRNA MGP_C57BL6NJ_T0060897.1 MGP_C57BL6NJ_G0027568.1 mouse_genomes_project 3 33918906 33920963 + MGP_C57BL6NJ_P0060897 Sox2 protein_coding protein_coding MGP_C57BL6NJ_T0014642.1 MGP_C57BL6NJ_G0012687.1 mouse_genomes_project 3 130378057 130378790 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001475.1 MGP_C57BL6NJ_G0001376.1 mouse_genomes_project 3 135276827 135278796 + TEC TEC MGP_C57BL6NJ_T0001476.1 MGP_C57BL6NJ_G0001376.1 mouse_genomes_project 3 135276828 135278796 + TEC TEC MGP_C57BL6NJ_T0014477.1 MGP_C57BL6NJ_G0012522.1 mouse_genomes_project 3 80486687 80487059 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060798.1 MGP_C57BL6NJ_G0027553.1 mouse_genomes_project 3 31435048 31467257 - MGP_C57BL6NJ_P0060798 Zmat3 protein_coding protein_coding MGP_C57BL6NJ_T0060799.1 MGP_C57BL6NJ_G0027553.1 mouse_genomes_project 3 31435052 31467199 - MGP_C57BL6NJ_P0060799 Zmat3 protein_coding protein_coding MGP_C57BL6NJ_T0060800.1 MGP_C57BL6NJ_G0027553.1 mouse_genomes_project 3 31462654 31467039 - MGP_C57BL6NJ_P0060800 Zmat3 protein_coding protein_coding MGP_C57BL6NJ_T0060801.1 MGP_C57BL6NJ_G0027553.1 mouse_genomes_project 3 31463784 31467593 - Zmat3 protein_coding retained_intron MGP_C57BL6NJ_T0102490.1 MGP_C57BL6NJ_G0040363.1 mouse_genomes_project 3 146267727 146276413 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102491.1 MGP_C57BL6NJ_G0040363.1 mouse_genomes_project 3 146269822 146283519 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102492.1 MGP_C57BL6NJ_G0040363.1 mouse_genomes_project 3 146278113 146284597 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0001336.1 MGP_C57BL6NJ_G0001237.1 mouse_genomes_project 3 52584096 52591056 - TEC TEC MGP_C57BL6NJ_T0061630.1 MGP_C57BL6NJ_G0027720.1 mouse_genomes_project 3 75313131 75325024 - MGP_C57BL6NJ_P0061630 Slitrk3 protein_coding protein_coding MGP_C57BL6NJ_T0061631.1 MGP_C57BL6NJ_G0027720.1 mouse_genomes_project 3 75313991 75325884 - MGP_C57BL6NJ_P0061631 Slitrk3 protein_coding protein_coding MGP_C57BL6NJ_T0099438.1 MGP_C57BL6NJ_G0037495.1 mouse_genomes_project 3 152564103 152566194 - Gm43445 sense_intronic sense_intronic MGP_C57BL6NJ_T0007836.1 MGP_C57BL6NJ_G0006409.1 mouse_genomes_project 3 114009226 114012576 + lincRNA lincRNA MGP_C57BL6NJ_T0007751.1 MGP_C57BL6NJ_G0006344.1 mouse_genomes_project 3 78416168 78469423 + Gm37256 lincRNA lincRNA MGP_C57BL6NJ_T0062073.1 MGP_C57BL6NJ_G0027819.1 mouse_genomes_project 3 92010498 92017872 - MGP_C57BL6NJ_P0062073 Rab25 protein_coding protein_coding MGP_C57BL6NJ_T0062074.1 MGP_C57BL6NJ_G0027819.1 mouse_genomes_project 3 92010778 92017821 - MGP_C57BL6NJ_P0062074 Rab25 protein_coding protein_coding MGP_C57BL6NJ_T0062075.1 MGP_C57BL6NJ_G0027819.1 mouse_genomes_project 3 92011145 92011984 - Rab25 protein_coding retained_intron MGP_C57BL6NJ_T0062076.1 MGP_C57BL6NJ_G0027819.1 mouse_genomes_project 3 92013111 92017854 - Rab25 protein_coding retained_intron MGP_C57BL6NJ_T0100276.1 MGP_C57BL6NJ_G0038322.1 mouse_genomes_project 3 90218486 90218646 + Gm23376 snRNA snRNA MGP_C57BL6NJ_T0007892.1 MGP_C57BL6NJ_G0006454.1 mouse_genomes_project 3 144771274 144774587 - Gm43357 lincRNA lincRNA MGP_C57BL6NJ_T0099441.1 MGP_C57BL6NJ_G0037498.1 mouse_genomes_project 3 162362953 162365099 - 1700012D16Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0062946.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100206078 100209781 - MGP_C57BL6NJ_P0062946 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0062947.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100206080 100209807 - MGP_C57BL6NJ_P0062947 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0062948.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100206379 100209827 - MGP_C57BL6NJ_P0062948 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0062949.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100207085 100208822 - MGP_C57BL6NJ_P0062949 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0062950.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100208027 100209779 - MGP_C57BL6NJ_P0062950 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0062951.1 MGP_C57BL6NJ_G0028016.1 mouse_genomes_project 3 100208248 100209650 - MGP_C57BL6NJ_P0062951 Ciart protein_coding protein_coding MGP_C57BL6NJ_T0063005.1 MGP_C57BL6NJ_G0028028.1 mouse_genomes_project 3 100586823 100587267 + MGP_C57BL6NJ_P0063005 Hist2h2ab protein_coding protein_coding MGP_C57BL6NJ_T0061007.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36834722 36892557 + MGP_C57BL6NJ_P0061007 Fgf2 protein_coding protein_coding MGP_C57BL6NJ_T0061008.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36835029 36897288 + MGP_C57BL6NJ_P0061008 Fgf2 protein_coding protein_coding MGP_C57BL6NJ_T0061009.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36835226 36891977 + MGP_C57BL6NJ_P0061009 Fgf2 protein_coding protein_coding MGP_C57BL6NJ_T0061010.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36856193 36891977 + Fgf2 protein_coding processed_transcript MGP_C57BL6NJ_T0061011.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36869863 36891977 + Fgf2 protein_coding processed_transcript MGP_C57BL6NJ_T0061012.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36869959 36891977 + MGP_C57BL6NJ_P0061012 Fgf2 protein_coding protein_coding MGP_C57BL6NJ_T0061013.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36869959 36891977 + MGP_C57BL6NJ_P0061013 Fgf2 protein_coding protein_coding MGP_C57BL6NJ_T0061014.1 MGP_C57BL6NJ_G0027588.1 mouse_genomes_project 3 36891720 36891977 + Fgf2 protein_coding retained_intron MGP_C57BL6NJ_T0004359.1 MGP_C57BL6NJ_G0003834.1 mouse_genomes_project 3 28973619 29009964 + Mecomos antisense antisense MGP_C57BL6NJ_T0004360.1 MGP_C57BL6NJ_G0003834.1 mouse_genomes_project 3 28978470 28984157 + Mecomos antisense antisense MGP_C57BL6NJ_T0062576.1 MGP_C57BL6NJ_G0027919.1 mouse_genomes_project 3 96492521 96492752 - MGP_C57BL6NJ_P0062576 Sprr4 protein_coding protein_coding MGP_C57BL6NJ_T0063527.1 MGP_C57BL6NJ_G0028157.1 mouse_genomes_project 3 112738882 112752491 + MGP_C57BL6NJ_P0063527 Kcna10 protein_coding protein_coding MGP_C57BL6NJ_T0063528.1 MGP_C57BL6NJ_G0028157.1 mouse_genomes_project 3 112738970 112743158 + Kcna10 protein_coding processed_transcript MGP_C57BL6NJ_T0063627.1 MGP_C57BL6NJ_G0028185.1 mouse_genomes_project 3 113839562 113844710 - MGP_C57BL6NJ_P0063627 Cyb561d1 protein_coding protein_coding MGP_C57BL6NJ_T0063628.1 MGP_C57BL6NJ_G0028185.1 mouse_genomes_project 3 113839646 113845088 - Cyb561d1 protein_coding processed_transcript MGP_C57BL6NJ_T0063629.1 MGP_C57BL6NJ_G0028185.1 mouse_genomes_project 3 113839646 113844710 - MGP_C57BL6NJ_P0063629 Cyb561d1 protein_coding protein_coding MGP_C57BL6NJ_T0063630.1 MGP_C57BL6NJ_G0028185.1 mouse_genomes_project 3 113842148 113844471 - MGP_C57BL6NJ_P0063630 Cyb561d1 protein_coding protein_coding MGP_C57BL6NJ_T0062482.1 MGP_C57BL6NJ_G0027881.1 mouse_genomes_project 3 94097295 94101995 - Slc27a3 protein_coding retained_intron MGP_C57BL6NJ_T0062483.1 MGP_C57BL6NJ_G0027881.1 mouse_genomes_project 3 94097295 94101984 - MGP_C57BL6NJ_P0062483 Slc27a3 protein_coding protein_coding MGP_C57BL6NJ_T0062484.1 MGP_C57BL6NJ_G0027881.1 mouse_genomes_project 3 94097297 94101721 - MGP_C57BL6NJ_P0062484 Slc27a3 protein_coding protein_coding MGP_C57BL6NJ_T0062485.1 MGP_C57BL6NJ_G0027881.1 mouse_genomes_project 3 94099491 94101038 - Slc27a3 protein_coding retained_intron MGP_C57BL6NJ_T0062486.1 MGP_C57BL6NJ_G0027881.1 mouse_genomes_project 3 94100419 94101687 - Slc27a3 protein_coding processed_transcript MGP_C57BL6NJ_T0001530.1 MGP_C57BL6NJ_G0001430.1 mouse_genomes_project 3 166370148 166373326 + TEC TEC MGP_C57BL6NJ_T0062721.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203454 99208940 + MGP_C57BL6NJ_P0062721 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062722.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203487 99205973 + MGP_C57BL6NJ_P0062722 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062723.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203487 99211005 + MGP_C57BL6NJ_P0062723 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062724.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203488 99205757 + MGP_C57BL6NJ_P0062724 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062725.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203514 99210793 + MGP_C57BL6NJ_P0062725 Rfx5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062726.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203539 99205147 + Rfx5 protein_coding processed_transcript MGP_C57BL6NJ_T0062727.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203539 99206592 + MGP_C57BL6NJ_P0062727 Rfx5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062728.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203549 99210793 + MGP_C57BL6NJ_P0062728 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062729.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203574 99205835 + MGP_C57BL6NJ_P0062729 Rfx5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062730.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203580 99210790 + Rfx5 protein_coding retained_intron MGP_C57BL6NJ_T0062731.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203605 99210793 + MGP_C57BL6NJ_P0062731 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062732.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203763 99206239 + MGP_C57BL6NJ_P0062732 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062733.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203857 99205771 + MGP_C57BL6NJ_P0062733 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062734.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99203906 99205802 + MGP_C57BL6NJ_P0062734 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062735.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99204206 99209050 + MGP_C57BL6NJ_P0062735 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062736.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99204458 99211005 + MGP_C57BL6NJ_P0062736 Rfx5 protein_coding protein_coding MGP_C57BL6NJ_T0062737.1 MGP_C57BL6NJ_G0027981.1 mouse_genomes_project 3 99204914 99206246 + Rfx5 protein_coding retained_intron MGP_C57BL6NJ_T0007615.1 MGP_C57BL6NJ_G0006245.1 mouse_genomes_project 3 6178348 6181679 - C230057A21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007616.1 MGP_C57BL6NJ_G0006245.1 mouse_genomes_project 3 6178543 6181839 - C230057A21Rik lincRNA lincRNA MGP_C57BL6NJ_T0060553.1 MGP_C57BL6NJ_G0027504.1 mouse_genomes_project 3 16239159 16242503 + MGP_C57BL6NJ_P0060553 Bhlhe22 protein_coding protein_coding MGP_C57BL6NJ_T0007608.1 MGP_C57BL6NJ_G0006241.1 mouse_genomes_project 3 2041218 2042482 + 1110015O18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007609.1 MGP_C57BL6NJ_G0006241.1 mouse_genomes_project 3 2042368 2058560 + 1110015O18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007610.1 MGP_C57BL6NJ_G0006241.1 mouse_genomes_project 3 2043153 2057624 + 1110015O18Rik lincRNA lincRNA MGP_C57BL6NJ_T0060475.1 MGP_C57BL6NJ_G0027480.1 mouse_genomes_project 3 7806752 7811241 - MGP_C57BL6NJ_P0060475 Fabp4 protein_coding protein_coding MGP_C57BL6NJ_T0060476.1 MGP_C57BL6NJ_G0027480.1 mouse_genomes_project 3 7806992 7811223 - Fabp4 protein_coding retained_intron MGP_C57BL6NJ_T0011790.1 MGP_C57BL6NJ_G0009875.1 mouse_genomes_project 3 6940799 6941110 + Gm22604 misc_RNA misc_RNA MGP_C57BL6NJ_T0004442.1 MGP_C57BL6NJ_G0003895.1 mouse_genomes_project 3 99208477 99211433 - B230398E01Rik antisense antisense MGP_C57BL6NJ_T0062911.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100071755 - Tars2 protein_coding retained_intron MGP_C57BL6NJ_T0062912.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100075933 - MGP_C57BL6NJ_P0062912 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062913.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100075933 - MGP_C57BL6NJ_P0062913 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062914.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100075897 - MGP_C57BL6NJ_P0062914 Tars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062915.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100075913 - MGP_C57BL6NJ_P0062915 Tars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062916.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060777 100075924 - MGP_C57BL6NJ_P0062916 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062917.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100060820 100062948 - Tars2 protein_coding processed_transcript MGP_C57BL6NJ_T0062918.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100064654 100075945 - MGP_C57BL6NJ_P0062918 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062919.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100066586 100069335 - Tars2 protein_coding processed_transcript MGP_C57BL6NJ_T0062920.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100068317 100075933 - MGP_C57BL6NJ_P0062920 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062921.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100068351 100075900 - MGP_C57BL6NJ_P0062921 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062922.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100069354 100075933 - MGP_C57BL6NJ_P0062922 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062923.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100069377 100075417 - Tars2 protein_coding processed_transcript MGP_C57BL6NJ_T0062924.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100069379 100075911 - MGP_C57BL6NJ_P0062924 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062925.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100071015 100071755 - Tars2 protein_coding retained_intron MGP_C57BL6NJ_T0062926.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100071141 100075879 - Tars2 protein_coding processed_transcript MGP_C57BL6NJ_T0062927.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100071476 100075534 - Tars2 protein_coding retained_intron MGP_C57BL6NJ_T0062928.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100071540 100075911 - MGP_C57BL6NJ_P0062928 Tars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062929.1 MGP_C57BL6NJ_G0028012.1 mouse_genomes_project 3 100075867 100081073 - MGP_C57BL6NJ_P0062929 Tars2 protein_coding protein_coding MGP_C57BL6NJ_T0062549.1 MGP_C57BL6NJ_G0027897.1 mouse_genomes_project 3 94396363 94400727 + MGP_C57BL6NJ_P0062549 S100a7a protein_coding protein_coding MGP_C57BL6NJ_T0100312.1 MGP_C57BL6NJ_G0038358.1 mouse_genomes_project 3 140061170 140061276 - Gm25307 snRNA snRNA MGP_C57BL6NJ_T0099413.1 MGP_C57BL6NJ_G0037470.1 mouse_genomes_project 3 109313029 109315466 - Gm42700 sense_intronic sense_intronic MGP_C57BL6NJ_T0063944.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128449564 128510648 - MGP_C57BL6NJ_P0063944 Abcd3 protein_coding protein_coding MGP_C57BL6NJ_T0063945.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128449697 128510784 - MGP_C57BL6NJ_P0063945 Abcd3 protein_coding protein_coding MGP_C57BL6NJ_T0063946.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128450546 128510648 - MGP_C57BL6NJ_P0063946 Abcd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063947.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128456989 128459462 - Abcd3 protein_coding retained_intron MGP_C57BL6NJ_T0063948.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128478769 128510391 - Abcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0063949.1 MGP_C57BL6NJ_G0028250.1 mouse_genomes_project 3 128489734 128510679 - Abcd3 protein_coding retained_intron MGP_C57BL6NJ_T0060940.1 MGP_C57BL6NJ_G0027575.1 mouse_genomes_project 3 35598713 35651329 - MGP_C57BL6NJ_P0060940 Qrfpr protein_coding protein_coding MGP_C57BL6NJ_T0060941.1 MGP_C57BL6NJ_G0027575.1 mouse_genomes_project 3 35606629 35651270 - Qrfpr protein_coding retained_intron MGP_C57BL6NJ_T0001388.1 MGP_C57BL6NJ_G0001289.1 mouse_genomes_project 3 91413356 91415629 + TEC TEC MGP_C57BL6NJ_T0064616.1 MGP_C57BL6NJ_G0028373.1 mouse_genomes_project 3 153804061 154070530 + MGP_C57BL6NJ_P0064616 Col24a1 protein_coding protein_coding MGP_C57BL6NJ_T0064617.1 MGP_C57BL6NJ_G0028373.1 mouse_genomes_project 3 153804116 153824675 + MGP_C57BL6NJ_P0064617 Col24a1 protein_coding protein_coding MGP_C57BL6NJ_T0064618.1 MGP_C57BL6NJ_G0028373.1 mouse_genomes_project 3 154033936 154057142 + Col24a1 protein_coding processed_transcript MGP_C57BL6NJ_T0064619.1 MGP_C57BL6NJ_G0028373.1 mouse_genomes_project 3 154063491 154070525 + Col24a1 protein_coding retained_intron MGP_C57BL6NJ_T0063388.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109626934 109701146 - MGP_C57BL6NJ_P0063388 Lrig2 protein_coding protein_coding MGP_C57BL6NJ_T0063389.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109693619 109754067 - MGP_C57BL6NJ_P0063389 Lrig2 protein_coding protein_coding MGP_C57BL6NJ_T0063390.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109693620 109754055 - MGP_C57BL6NJ_P0063390 Lrig2 protein_coding protein_coding MGP_C57BL6NJ_T0063391.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109696204 109720806 - Lrig2 protein_coding retained_intron MGP_C57BL6NJ_T0063392.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109696762 109754083 - MGP_C57BL6NJ_P0063392 Lrig2 protein_coding protein_coding MGP_C57BL6NJ_T0063393.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109696980 109754145 - Lrig2 protein_coding retained_intron MGP_C57BL6NJ_T0063394.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109698841 109702458 - Lrig2 protein_coding retained_intron MGP_C57BL6NJ_T0063395.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109722207 109753888 - Lrig2 protein_coding retained_intron MGP_C57BL6NJ_T0063396.1 MGP_C57BL6NJ_G0028122.1 mouse_genomes_project 3 109731296 109732334 - Lrig2 protein_coding retained_intron MGP_C57BL6NJ_T0061675.1 MGP_C57BL6NJ_G0027730.1 mouse_genomes_project 3 82045429 82144876 + MGP_C57BL6NJ_P0061675 protein_coding protein_coding MGP_C57BL6NJ_T0061676.1 MGP_C57BL6NJ_G0027730.1 mouse_genomes_project 3 82055021 82179619 + MGP_C57BL6NJ_P0061676 protein_coding protein_coding MGP_C57BL6NJ_T0061677.1 MGP_C57BL6NJ_G0027730.1 mouse_genomes_project 3 82055024 82146134 + MGP_C57BL6NJ_P0061677 protein_coding protein_coding MGP_C57BL6NJ_T0007710.1 MGP_C57BL6NJ_G0006312.1 mouse_genomes_project 3 51850411 51859786 + Gm5103 lincRNA lincRNA MGP_C57BL6NJ_T0007711.1 MGP_C57BL6NJ_G0006312.1 mouse_genomes_project 3 51850463 51859793 + Gm5103 lincRNA lincRNA MGP_C57BL6NJ_T0001386.1 MGP_C57BL6NJ_G0001287.1 mouse_genomes_project 3 88333301 88336167 - TEC TEC MGP_C57BL6NJ_T0063418.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110154913 110157368 + St7l protein_coding retained_intron MGP_C57BL6NJ_T0063419.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110155411 110230040 + MGP_C57BL6NJ_P0063419 St7l protein_coding protein_coding MGP_C57BL6NJ_T0063420.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110155411 110226836 + MGP_C57BL6NJ_P0063420 St7l protein_coding protein_coding MGP_C57BL6NJ_T0063421.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110155975 110227746 + MGP_C57BL6NJ_P0063421 St7l protein_coding protein_coding MGP_C57BL6NJ_T0063422.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110155979 110227870 + MGP_C57BL6NJ_P0063422 St7l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063423.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110155988 110184344 + MGP_C57BL6NJ_P0063423 St7l protein_coding protein_coding MGP_C57BL6NJ_T0063424.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110156021 110184276 + St7l protein_coding processed_transcript MGP_C57BL6NJ_T0063425.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110165589 110219477 + MGP_C57BL6NJ_P0063425 St7l protein_coding protein_coding MGP_C57BL6NJ_T0063426.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110165612 110177948 + St7l protein_coding processed_transcript MGP_C57BL6NJ_T0063427.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110177851 110219465 + MGP_C57BL6NJ_P0063427 St7l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063428.1 MGP_C57BL6NJ_G0028129.1 mouse_genomes_project 3 110183861 110189966 + St7l protein_coding retained_intron MGP_C57BL6NJ_T0004548.1 MGP_C57BL6NJ_G0003961.1 mouse_genomes_project 3 149883304 149903612 - Gm15689 antisense antisense MGP_C57BL6NJ_T0007883.1 MGP_C57BL6NJ_G0006446.1 mouse_genomes_project 3 141195011 141216925 - Gm42563 lincRNA lincRNA MGP_C57BL6NJ_T0001311.1 MGP_C57BL6NJ_G0001214.1 mouse_genomes_project 3 51127035 51135112 - TEC TEC MGP_C57BL6NJ_T0060740.1 MGP_C57BL6NJ_G0027539.1 mouse_genomes_project 3 29591896 29594763 - MGP_C57BL6NJ_P0060740 Actrt3 protein_coding protein_coding MGP_C57BL6NJ_T0064422.1 MGP_C57BL6NJ_G0028333.1 mouse_genomes_project 3 145822073 145823294 + MGP_C57BL6NJ_P0064422 protein_coding protein_coding MGP_C57BL6NJ_T0060892.1 MGP_C57BL6NJ_G0027567.1 mouse_genomes_project 3 33283433 33310576 - MGP_C57BL6NJ_P0060892 Dnajc19 protein_coding protein_coding MGP_C57BL6NJ_T0060893.1 MGP_C57BL6NJ_G0027567.1 mouse_genomes_project 3 33306542 33310585 - MGP_C57BL6NJ_P0060893 Dnajc19 protein_coding protein_coding MGP_C57BL6NJ_T0060894.1 MGP_C57BL6NJ_G0027567.1 mouse_genomes_project 3 33306587 33310574 - MGP_C57BL6NJ_P0060894 Dnajc19 protein_coding protein_coding MGP_C57BL6NJ_T0060895.1 MGP_C57BL6NJ_G0027567.1 mouse_genomes_project 3 33306617 33309444 - Dnajc19 protein_coding retained_intron MGP_C57BL6NJ_T0060896.1 MGP_C57BL6NJ_G0027567.1 mouse_genomes_project 3 33306697 33310526 - MGP_C57BL6NJ_P0060896 Dnajc19 protein_coding protein_coding MGP_C57BL6NJ_T0001262.1 MGP_C57BL6NJ_G0001165.1 mouse_genomes_project 3 29490489 29492592 - TEC TEC MGP_C57BL6NJ_T0100305.1 MGP_C57BL6NJ_G0038351.1 mouse_genomes_project 3 126900735 126900841 - Gm23733 snRNA snRNA MGP_C57BL6NJ_T0004405.1 MGP_C57BL6NJ_G0003868.1 mouse_genomes_project 3 65314016 65319046 + Gm26850 antisense antisense MGP_C57BL6NJ_T0004406.1 MGP_C57BL6NJ_G0003868.1 mouse_genomes_project 3 65314018 65315834 + Gm26850 antisense antisense MGP_C57BL6NJ_T0102248.1 MGP_C57BL6NJ_G0040240.1 mouse_genomes_project 3 151193132 151193638 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014222.1 MGP_C57BL6NJ_G0012267.1 mouse_genomes_project 3 1550943 1551160 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018427.1 MGP_C57BL6NJ_G0015901.1 mouse_genomes_project 3 91598312 91601171 + AW047730 processed_transcript processed_transcript MGP_C57BL6NJ_T0018428.1 MGP_C57BL6NJ_G0015901.1 mouse_genomes_project 3 91598324 91601171 + AW047730 processed_transcript processed_transcript MGP_C57BL6NJ_T0101617.1 MGP_C57BL6NJ_G0039663.1 mouse_genomes_project 3 138350358 138350486 - Gm26090 snoRNA snoRNA MGP_C57BL6NJ_T0007859.1 MGP_C57BL6NJ_G0006426.1 mouse_genomes_project 3 129419521 129427430 - Gm43568 lincRNA lincRNA MGP_C57BL6NJ_T0007860.1 MGP_C57BL6NJ_G0006426.1 mouse_genomes_project 3 129424472 129426925 - Gm43568 lincRNA lincRNA MGP_C57BL6NJ_T0007861.1 MGP_C57BL6NJ_G0006426.1 mouse_genomes_project 3 129425887 129427147 - Gm43568 lincRNA lincRNA MGP_C57BL6NJ_T0007745.1 MGP_C57BL6NJ_G0006339.1 mouse_genomes_project 3 75634007 75779465 + Gm38353 lincRNA lincRNA MGP_C57BL6NJ_T0064190.1 MGP_C57BL6NJ_G0028290.1 mouse_genomes_project 3 137253297 137272362 + MGP_C57BL6NJ_P0064190 Cfi protein_coding protein_coding MGP_C57BL6NJ_T0064191.1 MGP_C57BL6NJ_G0028290.1 mouse_genomes_project 3 137254139 137303540 + MGP_C57BL6NJ_P0064191 Cfi protein_coding protein_coding MGP_C57BL6NJ_T0063765.1 MGP_C57BL6NJ_G0028215.1 mouse_genomes_project 3 119576579 119594002 - MGP_C57BL6NJ_P0063765 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063766.1 MGP_C57BL6NJ_G0028215.1 mouse_genomes_project 3 119576744 119585258 - protein_coding retained_intron MGP_C57BL6NJ_T0063767.1 MGP_C57BL6NJ_G0028215.1 mouse_genomes_project 3 119585929 119598507 - MGP_C57BL6NJ_P0063767 protein_coding protein_coding MGP_C57BL6NJ_T0063768.1 MGP_C57BL6NJ_G0028215.1 mouse_genomes_project 3 119588226 119635978 - MGP_C57BL6NJ_P0063768 protein_coding protein_coding MGP_C57BL6NJ_T0060534.1 MGP_C57BL6NJ_G0027499.1 mouse_genomes_project 3 13476727 13570831 - MGP_C57BL6NJ_P0060534 protein_coding protein_coding MGP_C57BL6NJ_T0060535.1 MGP_C57BL6NJ_G0027499.1 mouse_genomes_project 3 13476727 13570929 - MGP_C57BL6NJ_P0060535 protein_coding protein_coding MGP_C57BL6NJ_T0060538.1 MGP_C57BL6NJ_G0027499.1 mouse_genomes_project 3 13526800 13570892 - protein_coding retained_intron MGP_C57BL6NJ_T0060539.1 MGP_C57BL6NJ_G0027499.1 mouse_genomes_project 3 13528543 13570855 - MGP_C57BL6NJ_P0060539 protein_coding protein_coding MGP_C57BL6NJ_T0004372.1 MGP_C57BL6NJ_G0003843.1 mouse_genomes_project 3 35325415 35335114 + Gm15952 antisense antisense MGP_C57BL6NJ_T0004373.1 MGP_C57BL6NJ_G0003843.1 mouse_genomes_project 3 35325415 35383729 + Gm15952 antisense antisense MGP_C57BL6NJ_T0004374.1 MGP_C57BL6NJ_G0003843.1 mouse_genomes_project 3 35325427 35330419 + Gm15952 antisense antisense MGP_C57BL6NJ_T0060674.1 MGP_C57BL6NJ_G0027530.1 mouse_genomes_project 3 26602446 26634560 - MGP_C57BL6NJ_P0060674 Tmem212 protein_coding protein_coding MGP_C57BL6NJ_T0101572.1 MGP_C57BL6NJ_G0039618.1 mouse_genomes_project 3 54136628 54136753 + Gm23675 snoRNA snoRNA MGP_C57BL6NJ_T0100271.1 MGP_C57BL6NJ_G0038317.1 mouse_genomes_project 3 89174291 89174353 - Gm24501 snRNA snRNA MGP_C57BL6NJ_T0061248.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427298 55451904 + MGP_C57BL6NJ_P0061248 Supt20 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061249.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427303 55464965 + MGP_C57BL6NJ_P0061249 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061250.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427319 55465091 + MGP_C57BL6NJ_P0061250 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061251.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427319 55465091 + MGP_C57BL6NJ_P0061251 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061252.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427321 55465095 + MGP_C57BL6NJ_P0061252 Supt20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061253.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427331 55442139 + MGP_C57BL6NJ_P0061253 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061254.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427354 55448005 + Supt20 protein_coding retained_intron MGP_C57BL6NJ_T0061255.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427354 55429779 + Supt20 protein_coding retained_intron MGP_C57BL6NJ_T0061256.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427354 55430743 + Supt20 protein_coding retained_intron MGP_C57BL6NJ_T0061257.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427358 55442370 + MGP_C57BL6NJ_P0061257 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061258.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55427601 55452090 + MGP_C57BL6NJ_P0061258 Supt20 protein_coding protein_coding MGP_C57BL6NJ_T0061259.1 MGP_C57BL6NJ_G0027631.1 mouse_genomes_project 3 55447490 55449606 + Supt20 protein_coding retained_intron MGP_C57BL6NJ_T0001529.1 MGP_C57BL6NJ_G0001429.1 mouse_genomes_project 3 166090114 166091788 + TEC TEC MGP_C57BL6NJ_T0001516.1 MGP_C57BL6NJ_G0001416.1 mouse_genomes_project 3 161387038 161388449 - TEC TEC MGP_C57BL6NJ_T0061965.1 MGP_C57BL6NJ_G0027798.1 mouse_genomes_project 3 91404268 91410102 - Hapln2 protein_coding retained_intron MGP_C57BL6NJ_T0061966.1 MGP_C57BL6NJ_G0027798.1 mouse_genomes_project 3 91404579 91409997 - MGP_C57BL6NJ_P0061966 Hapln2 protein_coding protein_coding MGP_C57BL6NJ_T0061967.1 MGP_C57BL6NJ_G0027798.1 mouse_genomes_project 3 91405156 91406192 - Hapln2 protein_coding retained_intron MGP_C57BL6NJ_T0061968.1 MGP_C57BL6NJ_G0027798.1 mouse_genomes_project 3 91406052 91410011 - MGP_C57BL6NJ_P0061968 Hapln2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0062844.1 MGP_C57BL6NJ_G0028000.1 mouse_genomes_project 3 99576626 99588131 - MGP_C57BL6NJ_P0062844 Anxa9 protein_coding protein_coding MGP_C57BL6NJ_T0062845.1 MGP_C57BL6NJ_G0028000.1 mouse_genomes_project 3 99576626 99588503 - MGP_C57BL6NJ_P0062845 Anxa9 protein_coding protein_coding MGP_C57BL6NJ_T0062846.1 MGP_C57BL6NJ_G0028000.1 mouse_genomes_project 3 99576828 99588131 - MGP_C57BL6NJ_P0062846 Anxa9 protein_coding protein_coding MGP_C57BL6NJ_T0062847.1 MGP_C57BL6NJ_G0028000.1 mouse_genomes_project 3 99587259 99588131 - MGP_C57BL6NJ_P0062847 Anxa9 protein_coding protein_coding MGP_C57BL6NJ_T0102232.1 MGP_C57BL6NJ_G0040232.1 mouse_genomes_project 3 67064018 67083263 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102233.1 MGP_C57BL6NJ_G0040232.1 mouse_genomes_project 3 67065452 67065926 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102234.1 MGP_C57BL6NJ_G0040232.1 mouse_genomes_project 3 67072450 67084450 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102235.1 MGP_C57BL6NJ_G0040232.1 mouse_genomes_project 3 67082567 67084292 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102236.1 MGP_C57BL6NJ_G0040232.1 mouse_genomes_project 3 67082601 67084458 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0014416.1 MGP_C57BL6NJ_G0012461.1 mouse_genomes_project 3 62555942 62556234 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060622.1 MGP_C57BL6NJ_G0027519.1 mouse_genomes_project 3 18578473 18581170 - Cpb1 protein_coding retained_intron MGP_C57BL6NJ_T0060623.1 MGP_C57BL6NJ_G0027519.1 mouse_genomes_project 3 18578498 18605964 - MGP_C57BL6NJ_P0060623 Cpb1 protein_coding protein_coding MGP_C57BL6NJ_T0060624.1 MGP_C57BL6NJ_G0027519.1 mouse_genomes_project 3 18594423 18596678 - Cpb1 protein_coding processed_transcript MGP_C57BL6NJ_T0061591.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70776445 70808422 + MGP_C57BL6NJ_P0061591 Smc4 protein_coding protein_coding MGP_C57BL6NJ_T0061592.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70776677 70791145 + MGP_C57BL6NJ_P0061592 Smc4 protein_coding protein_coding MGP_C57BL6NJ_T0061593.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70776698 70808417 + MGP_C57BL6NJ_P0061593 Smc4 protein_coding protein_coding MGP_C57BL6NJ_T0061594.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70776715 70808422 + MGP_C57BL6NJ_P0061594 Smc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061595.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70776722 70801442 + MGP_C57BL6NJ_P0061595 Smc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061596.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70789526 70791210 + Smc4 protein_coding retained_intron MGP_C57BL6NJ_T0061597.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70789732 70792343 + Smc4 protein_coding processed_transcript MGP_C57BL6NJ_T0061598.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70791951 70794416 + Smc4 protein_coding retained_intron MGP_C57BL6NJ_T0061599.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70795063 70797305 + Smc4 protein_coding retained_intron MGP_C57BL6NJ_T0061600.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70797197 70800887 + MGP_C57BL6NJ_P0061600 Smc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061601.1 MGP_C57BL6NJ_G0027710.1 mouse_genomes_project 3 70804171 70806882 + Smc4 protein_coding retained_intron MGP_C57BL6NJ_T0014634.1 MGP_C57BL6NJ_G0012679.1 mouse_genomes_project 3 128569065 128569442 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060755.1 MGP_C57BL6NJ_G0027544.1 mouse_genomes_project 3 29751796 29776412 + MGP_C57BL6NJ_P0060755 Samd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060756.1 MGP_C57BL6NJ_G0027544.1 mouse_genomes_project 3 29751843 29776420 + MGP_C57BL6NJ_P0060756 Samd7 protein_coding protein_coding MGP_C57BL6NJ_T0060757.1 MGP_C57BL6NJ_G0027544.1 mouse_genomes_project 3 29759347 29774741 + MGP_C57BL6NJ_P0060757 Samd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060758.1 MGP_C57BL6NJ_G0027544.1 mouse_genomes_project 3 29765499 29766740 + Samd7 protein_coding retained_intron MGP_C57BL6NJ_T0014542.1 MGP_C57BL6NJ_G0012587.1 mouse_genomes_project 3 100799252 100802350 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062579.1 MGP_C57BL6NJ_G0027922.1 mouse_genomes_project 3 96576409 96578747 - MGP_C57BL6NJ_P0062579 Smcp protein_coding protein_coding MGP_C57BL6NJ_T0062580.1 MGP_C57BL6NJ_G0027922.1 mouse_genomes_project 3 96576409 96581508 - MGP_C57BL6NJ_P0062580 Smcp protein_coding protein_coding MGP_C57BL6NJ_T0014729.1 MGP_C57BL6NJ_G0012774.1 mouse_genomes_project 3 167256441 167257410 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101565.1 MGP_C57BL6NJ_G0039611.1 mouse_genomes_project 3 37515990 37516121 - Gm22899 snoRNA snoRNA MGP_C57BL6NJ_T0014343.1 MGP_C57BL6NJ_G0012388.1 mouse_genomes_project 3 40199335 40199635 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063374.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168383 109210341 + MGP_C57BL6NJ_P0063374 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063375.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168531 109210341 + MGP_C57BL6NJ_P0063375 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063376.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168639 109227288 + MGP_C57BL6NJ_P0063376 Phtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063377.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168641 109210343 + MGP_C57BL6NJ_P0063377 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063378.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168645 109210341 + Phtf1 protein_coding retained_intron MGP_C57BL6NJ_T0063379.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168647 109191959 + MGP_C57BL6NJ_P0063379 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063380.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168719 109210343 + MGP_C57BL6NJ_P0063380 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063381.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109168861 109188393 + MGP_C57BL6NJ_P0063381 Phtf1 protein_coding protein_coding MGP_C57BL6NJ_T0063382.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109169198 109200374 + MGP_C57BL6NJ_P0063382 Phtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063383.1 MGP_C57BL6NJ_G0028120.1 mouse_genomes_project 3 109199272 109200418 + Phtf1 protein_coding retained_intron MGP_C57BL6NJ_T0001305.1 MGP_C57BL6NJ_G0001208.1 mouse_genomes_project 3 47422638 47425361 - TEC TEC MGP_C57BL6NJ_T0001435.1 MGP_C57BL6NJ_G0001336.1 mouse_genomes_project 3 128096570 128099909 - TEC TEC MGP_C57BL6NJ_T0062615.1 MGP_C57BL6NJ_G0027949.1 mouse_genomes_project 3 97335830 97340353 + Flg protein_coding TEC MGP_C57BL6NJ_T0062616.1 MGP_C57BL6NJ_G0027949.1 mouse_genomes_project 3 97335848 97342621 + MGP_C57BL6NJ_P0062616 Flg protein_coding protein_coding MGP_C57BL6NJ_T0062617.1 MGP_C57BL6NJ_G0027949.1 mouse_genomes_project 3 97339875 97342621 + MGP_C57BL6NJ_P0062617 Flg protein_coding protein_coding MGP_C57BL6NJ_T0062441.1 MGP_C57BL6NJ_G0027873.1 mouse_genomes_project 3 93770550 93893580 + MGP_C57BL6NJ_P0062441 Nup210l protein_coding protein_coding MGP_C57BL6NJ_T0062442.1 MGP_C57BL6NJ_G0027873.1 mouse_genomes_project 3 93770552 93893611 + MGP_C57BL6NJ_P0062442 Nup210l protein_coding protein_coding MGP_C57BL6NJ_T0099409.1 MGP_C57BL6NJ_G0037466.1 mouse_genomes_project 3 109051149 109052407 + Gm15472 sense_intronic sense_intronic MGP_C57BL6NJ_T0064664.1 MGP_C57BL6NJ_G0028385.1 mouse_genomes_project 3 154990949 154994086 + Ctbs protein_coding retained_intron MGP_C57BL6NJ_T0064665.1 MGP_C57BL6NJ_G0028385.1 mouse_genomes_project 3 154991624 155007530 + MGP_C57BL6NJ_P0064665 Ctbs protein_coding protein_coding MGP_C57BL6NJ_T0064666.1 MGP_C57BL6NJ_G0028385.1 mouse_genomes_project 3 154991632 154998496 + MGP_C57BL6NJ_P0064666 Ctbs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064667.1 MGP_C57BL6NJ_G0028385.1 mouse_genomes_project 3 154991647 155007452 + MGP_C57BL6NJ_P0064667 Ctbs protein_coding protein_coding MGP_C57BL6NJ_T0063575.1 MGP_C57BL6NJ_G0028172.1 mouse_genomes_project 3 113480005 113496519 + MGP_C57BL6NJ_P0063575 Eps8l3 protein_coding protein_coding MGP_C57BL6NJ_T0063576.1 MGP_C57BL6NJ_G0028172.1 mouse_genomes_project 3 113480020 113484028 + Eps8l3 protein_coding processed_transcript MGP_C57BL6NJ_T0063577.1 MGP_C57BL6NJ_G0028172.1 mouse_genomes_project 3 113480038 113484404 + MGP_C57BL6NJ_P0063577 Eps8l3 protein_coding protein_coding MGP_C57BL6NJ_T0018483.1 MGP_C57BL6NJ_G0015920.1 mouse_genomes_project 3 151164033 151193303 + processed_transcript processed_transcript MGP_C57BL6NJ_T0062146.1 MGP_C57BL6NJ_G0027829.1 mouse_genomes_project 3 92429359 92440541 - MGP_C57BL6NJ_P0062146 Msto1 protein_coding protein_coding MGP_C57BL6NJ_T0062147.1 MGP_C57BL6NJ_G0027829.1 mouse_genomes_project 3 92432878 92438684 - Msto1 protein_coding retained_intron MGP_C57BL6NJ_T0062148.1 MGP_C57BL6NJ_G0027829.1 mouse_genomes_project 3 92436224 92440609 - MGP_C57BL6NJ_P0062148 Msto1 protein_coding protein_coding MGP_C57BL6NJ_T0062149.1 MGP_C57BL6NJ_G0027829.1 mouse_genomes_project 3 92436253 92440513 - Msto1 protein_coding retained_intron MGP_C57BL6NJ_T0062150.1 MGP_C57BL6NJ_G0027829.1 mouse_genomes_project 3 92437968 92440492 - Msto1 protein_coding retained_intron MGP_C57BL6NJ_T0014443.1 MGP_C57BL6NJ_G0012488.1 mouse_genomes_project 3 70599699 70602322 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101596.1 MGP_C57BL6NJ_G0039642.1 mouse_genomes_project 3 99346334 99346419 - Gm24920 snoRNA snoRNA MGP_C57BL6NJ_T0004529.1 MGP_C57BL6NJ_G0003949.1 mouse_genomes_project 3 138608929 138611970 - Gm43352 antisense antisense MGP_C57BL6NJ_T0061578.1 MGP_C57BL6NJ_G0027708.1 mouse_genomes_project 3 70627882 70630460 + MGP_C57BL6NJ_P0061578 1110032F04Rik protein_coding protein_coding MGP_C57BL6NJ_T0064656.1 MGP_C57BL6NJ_G0028383.1 mouse_genomes_project 3 154731665 154802563 + MGP_C57BL6NJ_P0064656 Lpar3 protein_coding protein_coding MGP_C57BL6NJ_T0001465.1 MGP_C57BL6NJ_G0001366.1 mouse_genomes_project 3 134316674 134320372 - TEC TEC MGP_C57BL6NJ_T0099412.1 MGP_C57BL6NJ_G0037469.1 mouse_genomes_project 3 109289178 109290246 - 9530097N15Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0004443.1 MGP_C57BL6NJ_G0003896.1 mouse_genomes_project 3 99243441 99246028 - A730011C13Rik antisense antisense MGP_C57BL6NJ_T0004444.1 MGP_C57BL6NJ_G0003896.1 mouse_genomes_project 3 99244074 99246382 - A730011C13Rik antisense antisense MGP_C57BL6NJ_T0001531.1 MGP_C57BL6NJ_G0001431.1 mouse_genomes_project 3 166444176 166445741 + TEC TEC MGP_C57BL6NJ_T0004414.1 MGP_C57BL6NJ_G0003875.1 mouse_genomes_project 3 82995317 82998424 - Gm37892 antisense antisense MGP_C57BL6NJ_T0011796.1 MGP_C57BL6NJ_G0009881.1 mouse_genomes_project 3 33825763 33825977 + Gm27403 misc_RNA misc_RNA MGP_C57BL6NJ_T0001242.1 MGP_C57BL6NJ_G0001145.1 mouse_genomes_project 3 7914987 7915317 + TEC TEC MGP_C57BL6NJ_T0061776.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86910034 87063175 - MGP_C57BL6NJ_P0061776 D930015E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0061777.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86910588 87063137 - MGP_C57BL6NJ_P0061777 D930015E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0061778.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86910588 87063175 - MGP_C57BL6NJ_P0061778 D930015E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0061779.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86910589 86921598 - D930015E06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0061780.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86912711 86919959 - D930015E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0061781.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86912725 86921924 - D930015E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0061782.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86934742 86984965 - D930015E06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0061783.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 86954346 86959447 - D930015E06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0061784.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 87053314 87063128 - D930015E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0061785.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 87060173 87063161 - D930015E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0061786.1 MGP_C57BL6NJ_G0027757.1 mouse_genomes_project 3 87060374 87063134 - D930015E06Rik protein_coding retained_intron MGP_C57BL6NJ_T0060610.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18370136 18443260 + MGP_C57BL6NJ_P0060610 Hltf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060611.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18370136 18444469 + MGP_C57BL6NJ_P0060611 Hltf protein_coding protein_coding MGP_C57BL6NJ_T0060612.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18370145 18434625 + Hltf protein_coding retained_intron MGP_C57BL6NJ_T0060613.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18370178 18383960 + Hltf protein_coding retained_intron MGP_C57BL6NJ_T0060614.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18372085 18444455 + MGP_C57BL6NJ_P0060614 Hltf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060615.1 MGP_C57BL6NJ_G0027516.1 mouse_genomes_project 3 18432038 18444469 + Hltf protein_coding retained_intron MGP_C57BL6NJ_T0014333.1 MGP_C57BL6NJ_G0012378.1 mouse_genomes_project 3 37098587 37099236 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014686.1 MGP_C57BL6NJ_G0012731.1 mouse_genomes_project 3 146439469 146439695 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014557.1 MGP_C57BL6NJ_G0012602.1 mouse_genomes_project 3 104891672 104891840 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014337.1 MGP_C57BL6NJ_G0012382.1 mouse_genomes_project 3 37745583 37745926 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014390.1 MGP_C57BL6NJ_G0012435.1 mouse_genomes_project 3 55817033 55824738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007845.1 MGP_C57BL6NJ_G0006417.1 mouse_genomes_project 3 123379446 123397500 - 1700061I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007687.1 MGP_C57BL6NJ_G0006298.1 mouse_genomes_project 3 37963818 37980623 - Gm43536 lincRNA lincRNA MGP_C57BL6NJ_T0007688.1 MGP_C57BL6NJ_G0006298.1 mouse_genomes_project 3 37964668 37980625 - Gm43536 lincRNA lincRNA MGP_C57BL6NJ_T0007689.1 MGP_C57BL6NJ_G0006298.1 mouse_genomes_project 3 37966319 37980865 - Gm43536 lincRNA lincRNA MGP_C57BL6NJ_T0101623.1 MGP_C57BL6NJ_G0039669.1 mouse_genomes_project 3 157028714 157028846 - Gm23131 snoRNA snoRNA MGP_C57BL6NJ_T0001334.1 MGP_C57BL6NJ_G0001235.1 mouse_genomes_project 3 52512753 52513372 - TEC TEC MGP_C57BL6NJ_T0014367.1 MGP_C57BL6NJ_G0012412.1 mouse_genomes_project 3 49769587 49771033 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001437.1 MGP_C57BL6NJ_G0001338.1 mouse_genomes_project 3 128413742 128415550 - TEC TEC MGP_C57BL6NJ_T0007685.1 MGP_C57BL6NJ_G0006296.1 mouse_genomes_project 3 37732370 37737339 - lincRNA lincRNA MGP_C57BL6NJ_T0100265.1 MGP_C57BL6NJ_G0038311.1 mouse_genomes_project 3 68680211 68680318 + Gm22295 snRNA snRNA MGP_C57BL6NJ_T0014541.1 MGP_C57BL6NJ_G0012586.1 mouse_genomes_project 3 100444650 100444836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101577.1 MGP_C57BL6NJ_G0039623.1 mouse_genomes_project 3 66401681 66401807 - Gm25222 snoRNA snoRNA MGP_C57BL6NJ_T0103076.1 MGP_C57BL6NJ_G0040870.1 mouse_genomes_project 3 66406359 66406965 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0062585.1 MGP_C57BL6NJ_G0027926.1 mouse_genomes_project 3 96657375 96658652 - MGP_C57BL6NJ_P0062585 Lce1b protein_coding protein_coding MGP_C57BL6NJ_T0004546.1 MGP_C57BL6NJ_G0003959.1 mouse_genomes_project 3 146197445 146227349 - Gm16559 antisense antisense MGP_C57BL6NJ_T0007839.1 MGP_C57BL6NJ_G0006412.1 mouse_genomes_project 3 121906607 121908185 + Gm9889 lincRNA pseudogene MGP_C57BL6NJ_T0007840.1 MGP_C57BL6NJ_G0006412.1 mouse_genomes_project 3 121906607 121908186 + Gm9889 lincRNA lincRNA MGP_C57BL6NJ_T0064627.1 MGP_C57BL6NJ_G0028375.1 mouse_genomes_project 3 154163799 154166836 - MGP_C57BL6NJ_P0064627 Cyr61 protein_coding protein_coding MGP_C57BL6NJ_T0010789.1 MGP_C57BL6NJ_G0008874.1 mouse_genomes_project 3 134727708 134727776 + Mir302c miRNA miRNA MGP_C57BL6NJ_T0004367.1 MGP_C57BL6NJ_G0003839.1 mouse_genomes_project 3 31725008 31727661 + Gm37640 antisense antisense MGP_C57BL6NJ_T0100241.1 MGP_C57BL6NJ_G0038287.1 mouse_genomes_project 3 17851144 17851308 + Gm23330 snRNA snRNA MGP_C57BL6NJ_T0060683.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023497 27451194 + MGP_C57BL6NJ_P0060683 Tnik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060684.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023498 27456467 + MGP_C57BL6NJ_P0060684 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060685.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023559 27125611 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060686.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023559 27267720 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060687.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023846 27447058 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060688.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023846 27448832 + MGP_C57BL6NJ_P0060688 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060689.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023846 27448832 + MGP_C57BL6NJ_P0060689 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060690.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023865 27025146 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060691.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023926 27448591 + MGP_C57BL6NJ_P0060691 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060692.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023926 27448591 + MGP_C57BL6NJ_P0060692 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060693.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023926 27448591 + MGP_C57BL6NJ_P0060693 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060694.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023926 27448591 + MGP_C57BL6NJ_P0060694 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060695.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27023926 27448591 + MGP_C57BL6NJ_P0060695 Tnik protein_coding protein_coding MGP_C57BL6NJ_T0060696.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27176442 27374633 + Tnik protein_coding processed_transcript MGP_C57BL6NJ_T0060697.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27308295 27310110 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060698.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27410173 27419777 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060699.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27431101 27446554 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0060700.1 MGP_C57BL6NJ_G0027532.1 mouse_genomes_project 3 27447454 27449358 + Tnik protein_coding retained_intron MGP_C57BL6NJ_T0001267.1 MGP_C57BL6NJ_G0001170.1 mouse_genomes_project 3 31559288 31560459 + TEC TEC MGP_C57BL6NJ_T0001317.1 MGP_C57BL6NJ_G0001220.1 mouse_genomes_project 3 51759863 51760279 - TEC TEC MGP_C57BL6NJ_T0061446.1 MGP_C57BL6NJ_G0027676.1 mouse_genomes_project 3 62633783 62637485 - MGP_C57BL6NJ_P0061446 B430305J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0007775.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91604502 91609020 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007776.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91604515 91624418 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007777.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91605001 91624975 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007778.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91607196 91623268 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007779.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91612179 91620840 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007780.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91612189 91625026 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007781.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91621643 91623282 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007782.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91623259 91628939 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007783.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91624912 91626990 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007784.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91627547 91628750 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0007785.1 MGP_C57BL6NJ_G0006365.1 mouse_genomes_project 3 91627762 91628939 + Gm3764 lincRNA lincRNA MGP_C57BL6NJ_T0063337.1 MGP_C57BL6NJ_G0028112.1 mouse_genomes_project 3 108922497 108929508 + MGP_C57BL6NJ_P0063337 Gm10964 protein_coding protein_coding MGP_C57BL6NJ_T0064586.1 MGP_C57BL6NJ_G0028367.1 mouse_genomes_project 3 153131796 153195786 - MGP_C57BL6NJ_P0064586 protein_coding protein_coding MGP_C57BL6NJ_T0101581.1 MGP_C57BL6NJ_G0039627.1 mouse_genomes_project 3 78162087 78162222 + Gm25846 snoRNA snoRNA MGP_C57BL6NJ_T0063783.1 MGP_C57BL6NJ_G0028218.1 mouse_genomes_project 3 121041754 121281404 + MGP_C57BL6NJ_P0063783 Olfm3 protein_coding protein_coding MGP_C57BL6NJ_T0063784.1 MGP_C57BL6NJ_G0028218.1 mouse_genomes_project 3 121042311 121276656 + MGP_C57BL6NJ_P0063784 Olfm3 protein_coding protein_coding MGP_C57BL6NJ_T0063785.1 MGP_C57BL6NJ_G0028218.1 mouse_genomes_project 3 121233096 121280938 + MGP_C57BL6NJ_P0063785 Olfm3 protein_coding protein_coding MGP_C57BL6NJ_T0014577.1 MGP_C57BL6NJ_G0012622.1 mouse_genomes_project 3 109653401 109654116 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018468.1 MGP_C57BL6NJ_G0015915.1 mouse_genomes_project 3 129049787 129059906 - processed_transcript retained_intron MGP_C57BL6NJ_T0063827.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122833942 122870565 - MGP_C57BL6NJ_P0063827 Trmt13 protein_coding protein_coding MGP_C57BL6NJ_T0063828.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122833943 122847686 - MGP_C57BL6NJ_P0063828 Trmt13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063829.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122833944 122847710 - MGP_C57BL6NJ_P0063829 Trmt13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063830.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122834185 122836326 - Trmt13 protein_coding processed_transcript MGP_C57BL6NJ_T0063831.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122836973 122847737 - Trmt13 protein_coding retained_intron MGP_C57BL6NJ_T0063832.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122838661 122847535 - MGP_C57BL6NJ_P0063832 Trmt13 protein_coding protein_coding MGP_C57BL6NJ_T0063833.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122842417 122847518 - MGP_C57BL6NJ_P0063833 Trmt13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063834.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122844837 122847651 - Trmt13 protein_coding retained_intron MGP_C57BL6NJ_T0063835.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122846808 122847688 - MGP_C57BL6NJ_P0063835 Trmt13 protein_coding protein_coding MGP_C57BL6NJ_T0063840.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122848243 122870099 - Trmt13 protein_coding processed_transcript MGP_C57BL6NJ_T0063842.1 MGP_C57BL6NJ_G0028229.1 mouse_genomes_project 3 122869517 122870386 - Trmt13 protein_coding retained_intron MGP_C57BL6NJ_T0014727.1 MGP_C57BL6NJ_G0012772.1 mouse_genomes_project 3 165559546 165560012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001329.1 MGP_C57BL6NJ_G0001231.1 mouse_genomes_project 3 52388572 52392683 - TEC TEC MGP_C57BL6NJ_T0018440.1 MGP_C57BL6NJ_G0015906.1 mouse_genomes_project 3 105269769 105272230 + 4930406D18Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018441.1 MGP_C57BL6NJ_G0015906.1 mouse_genomes_project 3 105269803 105282189 + 4930406D18Rik processed_transcript lincRNA MGP_C57BL6NJ_T0061873.1 MGP_C57BL6NJ_G0027779.1 mouse_genomes_project 3 90568748 90581577 - MGP_C57BL6NJ_P0061873 Fcrls protein_coding protein_coding MGP_C57BL6NJ_T0061874.1 MGP_C57BL6NJ_G0027779.1 mouse_genomes_project 3 90576928 90581716 - MGP_C57BL6NJ_P0061874 Fcrls protein_coding protein_coding MGP_C57BL6NJ_T0014511.1 MGP_C57BL6NJ_G0012556.1 mouse_genomes_project 3 94453653 94454387 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063560.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113251254 113267406 - MGP_C57BL6NJ_P0063560 Ahcyl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063561.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113251256 113286198 - MGP_C57BL6NJ_P0063561 Ahcyl1 protein_coding protein_coding MGP_C57BL6NJ_T0063562.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113252089 113253733 - Ahcyl1 protein_coding processed_transcript MGP_C57BL6NJ_T0063563.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113252619 113258711 - Ahcyl1 protein_coding retained_intron MGP_C57BL6NJ_T0063564.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113253528 113255620 - Ahcyl1 protein_coding retained_intron MGP_C57BL6NJ_T0063565.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113256386 113257646 - Ahcyl1 protein_coding retained_intron MGP_C57BL6NJ_T0063566.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113259284 113285601 - MGP_C57BL6NJ_P0063566 Ahcyl1 protein_coding protein_coding MGP_C57BL6NJ_T0063567.1 MGP_C57BL6NJ_G0028170.1 mouse_genomes_project 3 113259872 113286143 - Ahcyl1 protein_coding retained_intron MGP_C57BL6NJ_T0007849.1 MGP_C57BL6NJ_G0006421.1 mouse_genomes_project 3 127219632 127513156 - lincRNA lincRNA MGP_C57BL6NJ_T0007850.1 MGP_C57BL6NJ_G0006421.1 mouse_genomes_project 3 127309534 127513155 - lincRNA lincRNA MGP_C57BL6NJ_T0007851.1 MGP_C57BL6NJ_G0006421.1 mouse_genomes_project 3 127314712 127513137 - lincRNA lincRNA MGP_C57BL6NJ_T0007852.1 MGP_C57BL6NJ_G0006421.1 mouse_genomes_project 3 127391165 127513114 - lincRNA lincRNA MGP_C57BL6NJ_T0014256.1 MGP_C57BL6NJ_G0012301.1 mouse_genomes_project 3 10137345 10137712 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061646.1 MGP_C57BL6NJ_G0027725.1 mouse_genomes_project 3 77948729 77991488 - MGP_C57BL6NJ_P0061646 Pdcd10 protein_coding protein_coding MGP_C57BL6NJ_T0061647.1 MGP_C57BL6NJ_G0027725.1 mouse_genomes_project 3 77949305 77974765 - MGP_C57BL6NJ_P0061647 Pdcd10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061648.1 MGP_C57BL6NJ_G0027725.1 mouse_genomes_project 3 77954158 77991443 - MGP_C57BL6NJ_P0061648 Pdcd10 protein_coding protein_coding MGP_C57BL6NJ_T0061649.1 MGP_C57BL6NJ_G0027725.1 mouse_genomes_project 3 77962395 77991391 - MGP_C57BL6NJ_P0061649 Pdcd10 protein_coding protein_coding MGP_C57BL6NJ_T0061650.1 MGP_C57BL6NJ_G0027725.1 mouse_genomes_project 3 77966901 77991469 - Pdcd10 protein_coding retained_intron MGP_C57BL6NJ_T0061379.1 MGP_C57BL6NJ_G0027659.1 mouse_genomes_project 3 59835850 59877737 - MGP_C57BL6NJ_P0061379 Clrn1 protein_coding protein_coding MGP_C57BL6NJ_T0061380.1 MGP_C57BL6NJ_G0027659.1 mouse_genomes_project 3 59837037 59877737 - MGP_C57BL6NJ_P0061380 Clrn1 protein_coding protein_coding MGP_C57BL6NJ_T0061381.1 MGP_C57BL6NJ_G0027659.1 mouse_genomes_project 3 59837803 59877865 - MGP_C57BL6NJ_P0061381 Clrn1 protein_coding protein_coding MGP_C57BL6NJ_T0061382.1 MGP_C57BL6NJ_G0027659.1 mouse_genomes_project 3 59838185 59857872 - Clrn1 protein_coding retained_intron MGP_C57BL6NJ_T0064848.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956631 163015916 - MGP_C57BL6NJ_P0064848 Msh4 protein_coding protein_coding MGP_C57BL6NJ_T0064849.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 162980121 - Msh4 protein_coding retained_intron MGP_C57BL6NJ_T0064850.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 162984645 - Msh4 protein_coding retained_intron MGP_C57BL6NJ_T0064851.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 162966581 - Msh4 protein_coding processed_transcript MGP_C57BL6NJ_T0064852.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 162984645 - Msh4 protein_coding retained_intron MGP_C57BL6NJ_T0064853.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 162966607 - Msh4 protein_coding retained_intron MGP_C57BL6NJ_T0064854.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956751 163014509 - MGP_C57BL6NJ_P0064854 Msh4 protein_coding protein_coding MGP_C57BL6NJ_T0064855.1 MGP_C57BL6NJ_G0028412.1 mouse_genomes_project 3 162956755 163014669 - MGP_C57BL6NJ_P0064855 Msh4 protein_coding protein_coding MGP_C57BL6NJ_T0014253.1 MGP_C57BL6NJ_G0012298.1 mouse_genomes_project 3 8662064 8662818 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100279.1 MGP_C57BL6NJ_G0038325.1 mouse_genomes_project 3 92651219 92651323 - Gm22935 snRNA snRNA MGP_C57BL6NJ_T0004421.1 MGP_C57BL6NJ_G0003879.1 mouse_genomes_project 3 88473252 88489143 + 1700036G14Rik antisense antisense MGP_C57BL6NJ_T0061445.1 MGP_C57BL6NJ_G0027675.1 mouse_genomes_project 3 62633171 62639954 + MGP_C57BL6NJ_P0061445 Rap2b protein_coding protein_coding MGP_C57BL6NJ_T0014391.1 MGP_C57BL6NJ_G0012436.1 mouse_genomes_project 3 57662556 57663027 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001539.1 MGP_C57BL6NJ_G0001439.1 mouse_genomes_project 3 167980823 167981848 + TEC TEC MGP_C57BL6NJ_T0018445.1 MGP_C57BL6NJ_G0015909.1 mouse_genomes_project 3 111353306 111378410 + Gm42890 processed_transcript retained_intron MGP_C57BL6NJ_T0018446.1 MGP_C57BL6NJ_G0015909.1 mouse_genomes_project 3 111359918 111370215 + Gm42890 processed_transcript retained_intron MGP_C57BL6NJ_T0061176.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51894850 51956630 + Naa15 protein_coding processed_transcript MGP_C57BL6NJ_T0061177.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51894877 51957860 + MGP_C57BL6NJ_P0061177 Naa15 protein_coding protein_coding MGP_C57BL6NJ_T0061178.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51895168 51925932 + MGP_C57BL6NJ_P0061178 Naa15 protein_coding protein_coding MGP_C57BL6NJ_T0061179.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51921743 51926960 + Naa15 protein_coding retained_intron MGP_C57BL6NJ_T0061180.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51922732 51931628 + MGP_C57BL6NJ_P0061180 Naa15 protein_coding protein_coding MGP_C57BL6NJ_T0061181.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51942858 51946434 + Naa15 protein_coding retained_intron MGP_C57BL6NJ_T0061182.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51943851 51946170 + Naa15 protein_coding retained_intron MGP_C57BL6NJ_T0061183.1 MGP_C57BL6NJ_G0027615.1 mouse_genomes_project 3 51954205 51957278 + Naa15 protein_coding retained_intron MGP_C57BL6NJ_T0014268.1 MGP_C57BL6NJ_G0012313.1 mouse_genomes_project 3 12561007 12561296 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007864.1 MGP_C57BL6NJ_G0006429.1 mouse_genomes_project 3 133290085 133292116 + Gm42827 lincRNA lincRNA MGP_C57BL6NJ_T0014232.1 MGP_C57BL6NJ_G0012277.1 mouse_genomes_project 3 3451971 3454901 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014632.1 MGP_C57BL6NJ_G0012677.1 mouse_genomes_project 3 128049501 128049922 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099389.1 MGP_C57BL6NJ_G0037446.1 mouse_genomes_project 3 103901327 103905679 + Gm43024 sense_intronic sense_intronic MGP_C57BL6NJ_T0061022.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36907075 37071672 + MGP_C57BL6NJ_P0061022 Spata5 protein_coding protein_coding MGP_C57BL6NJ_T0061023.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36907477 37071672 + MGP_C57BL6NJ_P0061023 Spata5 protein_coding protein_coding MGP_C57BL6NJ_T0061024.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36907491 37071672 + MGP_C57BL6NJ_P0061024 Spata5 protein_coding protein_coding MGP_C57BL6NJ_T0061025.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36907552 36912570 + Spata5 protein_coding processed_transcript MGP_C57BL6NJ_T0061026.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36908043 36913333 + Spata5 protein_coding processed_transcript MGP_C57BL6NJ_T0061027.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36919237 36926332 + Spata5 protein_coding processed_transcript MGP_C57BL6NJ_T0061028.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36923746 36926452 + Spata5 protein_coding retained_intron MGP_C57BL6NJ_T0061029.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36939956 37020501 + Spata5 protein_coding retained_intron MGP_C57BL6NJ_T0061030.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 36983600 37071585 + Spata5 protein_coding processed_transcript MGP_C57BL6NJ_T0061031.1 MGP_C57BL6NJ_G0027590.1 mouse_genomes_project 3 37066243 37071666 + Spata5 protein_coding processed_transcript MGP_C57BL6NJ_T0060723.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28909571 28974397 - MGP_C57BL6NJ_P0060723 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060724.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28909581 28974746 - MGP_C57BL6NJ_P0060724 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060725.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28909582 29105131 - MGP_C57BL6NJ_P0060725 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060726.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28910842 29209308 - MGP_C57BL6NJ_P0060726 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060727.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28910991 28972314 - MGP_C57BL6NJ_P0060727 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060728.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28910991 28957445 - MGP_C57BL6NJ_P0060728 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060729.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28911057 28957484 - MGP_C57BL6NJ_P0060729 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060730.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28921349 29499679 - MGP_C57BL6NJ_P0060730 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060731.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28923731 29499987 - MGP_C57BL6NJ_P0060731 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060732.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28935619 29541089 - MGP_C57BL6NJ_P0060732 Mecom protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060733.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28942236 28974302 - Mecom protein_coding processed_transcript MGP_C57BL6NJ_T0060734.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28942236 28974445 - Mecom protein_coding retained_intron MGP_C57BL6NJ_T0060735.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28957510 28972680 - MGP_C57BL6NJ_P0060735 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0060736.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 28975916 29499898 - Mecom protein_coding processed_transcript MGP_C57BL6NJ_T0060737.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 29206588 29209106 - Mecom protein_coding retained_intron MGP_C57BL6NJ_T0060738.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 29207714 29499652 - Mecom protein_coding processed_transcript MGP_C57BL6NJ_T0060739.1 MGP_C57BL6NJ_G0027538.1 mouse_genomes_project 3 29209117 29209465 - MGP_C57BL6NJ_P0060739 Mecom protein_coding protein_coding MGP_C57BL6NJ_T0001327.1 MGP_C57BL6NJ_G0001229.1 mouse_genomes_project 3 52342757 52343778 - TEC TEC MGP_C57BL6NJ_T0004354.1 MGP_C57BL6NJ_G0003831.1 mouse_genomes_project 3 24934990 24936219 + A830092H15Rik antisense antisense MGP_C57BL6NJ_T0004355.1 MGP_C57BL6NJ_G0003831.1 mouse_genomes_project 3 24935791 24937218 + A830092H15Rik antisense antisense MGP_C57BL6NJ_T0099437.1 MGP_C57BL6NJ_G0037494.1 mouse_genomes_project 3 136565262 136566735 + Gm27195 sense_intronic sense_intronic MGP_C57BL6NJ_T0061388.1 MGP_C57BL6NJ_G0027661.1 mouse_genomes_project 3 60112222 60117596 - MGP_C57BL6NJ_P0061388 Gpr171 protein_coding protein_coding MGP_C57BL6NJ_T0060515.1 MGP_C57BL6NJ_G0027491.1 mouse_genomes_project 3 12506758 12532805 + MGP_C57BL6NJ_P0060515 E2f5 protein_coding protein_coding MGP_C57BL6NJ_T0060516.1 MGP_C57BL6NJ_G0027491.1 mouse_genomes_project 3 12506788 12532804 + MGP_C57BL6NJ_P0060516 E2f5 protein_coding protein_coding MGP_C57BL6NJ_T0099096.1 MGP_C57BL6NJ_G0037160.1 mouse_genomes_project 3 134941191 134941288 + Gm23279 rRNA rRNA MGP_C57BL6NJ_T0007875.1 MGP_C57BL6NJ_G0006438.1 mouse_genomes_project 3 138312982 138318144 - lincRNA lincRNA MGP_C57BL6NJ_T0014478.1 MGP_C57BL6NJ_G0012523.1 mouse_genomes_project 3 80575755 80577164 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061094.1 MGP_C57BL6NJ_G0027603.1 mouse_genomes_project 3 40685801 40707940 - MGP_C57BL6NJ_P0061094 Pgrmc2 protein_coding protein_coding MGP_C57BL6NJ_T0061095.1 MGP_C57BL6NJ_G0027603.1 mouse_genomes_project 3 40687995 40690146 - Pgrmc2 protein_coding retained_intron MGP_C57BL6NJ_T0099424.1 MGP_C57BL6NJ_G0037481.1 mouse_genomes_project 3 109752326 109753540 - 4930509H03Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0014454.1 MGP_C57BL6NJ_G0012499.1 mouse_genomes_project 3 71565078 71565584 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063255.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107851226 107855622 - Tshb protein_coding retained_intron MGP_C57BL6NJ_T0063256.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107853159 107867371 - MGP_C57BL6NJ_P0063256 Tshb protein_coding protein_coding MGP_C57BL6NJ_T0063257.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107853159 107867331 - MGP_C57BL6NJ_P0063257 Tshb protein_coding protein_coding MGP_C57BL6NJ_T0063258.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107853168 107867375 - MGP_C57BL6NJ_P0063258 Tshb protein_coding protein_coding MGP_C57BL6NJ_T0063259.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107853180 107867331 - MGP_C57BL6NJ_P0063259 Tshb protein_coding protein_coding MGP_C57BL6NJ_T0063260.1 MGP_C57BL6NJ_G0028099.1 mouse_genomes_project 3 107853207 107867140 - MGP_C57BL6NJ_P0063260 Tshb protein_coding protein_coding MGP_C57BL6NJ_T0014445.1 MGP_C57BL6NJ_G0012490.1 mouse_genomes_project 3 70662318 70662597 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101582.1 MGP_C57BL6NJ_G0039628.1 mouse_genomes_project 3 79679985 79680062 - Gm23644 snoRNA snoRNA MGP_C57BL6NJ_T0010755.1 MGP_C57BL6NJ_G0008840.1 mouse_genomes_project 3 75433440 75433550 + Gm24544 miRNA miRNA MGP_C57BL6NJ_T0062779.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389584 99394005 - MGP_C57BL6NJ_P0062779 Scnm1 protein_coding protein_coding MGP_C57BL6NJ_T0062780.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389767 99390733 - Scnm1 protein_coding retained_intron MGP_C57BL6NJ_T0062781.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389768 99393767 - Scnm1 protein_coding retained_intron MGP_C57BL6NJ_T0062782.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389770 99390337 - Scnm1 protein_coding retained_intron MGP_C57BL6NJ_T0062783.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389772 99390510 - Scnm1 protein_coding retained_intron MGP_C57BL6NJ_T0062784.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389774 99391260 - Scnm1 protein_coding processed_transcript MGP_C57BL6NJ_T0062785.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99389777 99394005 - MGP_C57BL6NJ_P0062785 Scnm1 protein_coding protein_coding MGP_C57BL6NJ_T0062786.1 MGP_C57BL6NJ_G0027988.1 mouse_genomes_project 3 99390341 99393933 - Scnm1 protein_coding retained_intron MGP_C57BL6NJ_T0010795.1 MGP_C57BL6NJ_G0008880.1 mouse_genomes_project 3 141842734 141842813 - Mir1895 miRNA miRNA MGP_C57BL6NJ_T0061505.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227268 67253385 + MGP_C57BL6NJ_P0061505 Lekr1 protein_coding protein_coding MGP_C57BL6NJ_T0061506.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227275 67251430 + Lekr1 protein_coding processed_transcript MGP_C57BL6NJ_T0061507.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227286 67307633 + Lekr1 protein_coding processed_transcript MGP_C57BL6NJ_T0061508.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227308 67229477 + Lekr1 protein_coding retained_intron MGP_C57BL6NJ_T0061509.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227322 67335692 + Lekr1 protein_coding processed_transcript MGP_C57BL6NJ_T0061510.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67227357 67296489 + Lekr1 protein_coding processed_transcript MGP_C57BL6NJ_T0061511.1 MGP_C57BL6NJ_G0027692.1 mouse_genomes_project 3 67251258 67394652 + Lekr1 protein_coding processed_transcript MGP_C57BL6NJ_T0014421.1 MGP_C57BL6NJ_G0012466.1 mouse_genomes_project 3 64484874 64485493 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100303.1 MGP_C57BL6NJ_G0038349.1 mouse_genomes_project 3 116332249 116332354 - Gm26076 snRNA snRNA MGP_C57BL6NJ_T0004478.1 MGP_C57BL6NJ_G0003917.1 mouse_genomes_project 3 109642821 109653324 + Gm43257 antisense antisense MGP_C57BL6NJ_T0063276.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108127612 108168516 + MGP_C57BL6NJ_P0063276 Csde1 protein_coding protein_coding MGP_C57BL6NJ_T0063277.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108127627 108168323 + MGP_C57BL6NJ_P0063277 Csde1 protein_coding protein_coding MGP_C57BL6NJ_T0063278.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108127633 108168518 + MGP_C57BL6NJ_P0063278 Csde1 protein_coding protein_coding MGP_C57BL6NJ_T0063279.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108127640 108168034 + MGP_C57BL6NJ_P0063279 Csde1 protein_coding protein_coding MGP_C57BL6NJ_T0063280.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108127684 108168136 + MGP_C57BL6NJ_P0063280 Csde1 protein_coding protein_coding MGP_C57BL6NJ_T0063281.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108135613 108150395 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0063282.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108135706 108137509 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0063283.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108136776 108151523 + Csde1 protein_coding processed_transcript MGP_C57BL6NJ_T0063284.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108147377 108152277 + Csde1 protein_coding processed_transcript MGP_C57BL6NJ_T0063285.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108147636 108151702 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0063286.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108147665 108155711 + MGP_C57BL6NJ_P0063286 Csde1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063287.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108150830 108168118 + MGP_C57BL6NJ_P0063287 Csde1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063288.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108151179 108151879 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0063289.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108158908 108159980 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0063290.1 MGP_C57BL6NJ_G0028103.1 mouse_genomes_project 3 108164961 108166040 + Csde1 protein_coding retained_intron MGP_C57BL6NJ_T0061277.1 MGP_C57BL6NJ_G0027636.1 mouse_genomes_project 3 55554665 55559342 - MGP_C57BL6NJ_P0061277 Rfxap protein_coding protein_coding MGP_C57BL6NJ_T0061278.1 MGP_C57BL6NJ_G0027636.1 mouse_genomes_project 3 55555771 55557317 - Rfxap protein_coding processed_transcript MGP_C57BL6NJ_T0061279.1 MGP_C57BL6NJ_G0027636.1 mouse_genomes_project 3 55557324 55558971 - Rfxap protein_coding processed_transcript MGP_C57BL6NJ_T0063486.1 MGP_C57BL6NJ_G0028148.1 mouse_genomes_project 3 111859957 111878817 - MGP_C57BL6NJ_P0063486 Chil6 protein_coding protein_coding MGP_C57BL6NJ_T0014384.1 MGP_C57BL6NJ_G0012429.1 mouse_genomes_project 3 53957491 53958226 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064633.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154459690 154466506 + MGP_C57BL6NJ_P0064633 2410004B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0064634.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154459718 154466504 + MGP_C57BL6NJ_P0064634 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064635.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154459866 154465487 + MGP_C57BL6NJ_P0064635 2410004B18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064636.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154459912 154460464 + 2410004B18Rik protein_coding retained_intron MGP_C57BL6NJ_T0064637.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154459961 154465919 + MGP_C57BL6NJ_P0064637 2410004B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0064638.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154460320 154465530 + 2410004B18Rik protein_coding retained_intron MGP_C57BL6NJ_T0064639.1 MGP_C57BL6NJ_G0028378.1 mouse_genomes_project 3 154460762 154465875 + MGP_C57BL6NJ_P0064639 2410004B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0061876.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90703173 90718583 + MGP_C57BL6NJ_P0061876 Fcrl1 protein_coding protein_coding MGP_C57BL6NJ_T0061877.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90703175 90718976 + MGP_C57BL6NJ_P0061877 Fcrl1 protein_coding protein_coding MGP_C57BL6NJ_T0061878.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90703234 90718977 + MGP_C57BL6NJ_P0061878 Fcrl1 protein_coding protein_coding MGP_C57BL6NJ_T0061879.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90703246 90729293 + MGP_C57BL6NJ_P0061879 Fcrl1 protein_coding protein_coding MGP_C57BL6NJ_T0061880.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90703253 90718597 + MGP_C57BL6NJ_P0061880 Fcrl1 protein_coding protein_coding MGP_C57BL6NJ_T0061881.1 MGP_C57BL6NJ_G0027781.1 mouse_genomes_project 3 90712502 90718941 + Fcrl1 protein_coding retained_intron MGP_C57BL6NJ_T0001425.1 MGP_C57BL6NJ_G0001326.1 mouse_genomes_project 3 122823632 122825994 - TEC TEC MGP_C57BL6NJ_T0101570.1 MGP_C57BL6NJ_G0039616.1 mouse_genomes_project 3 49878282 49878410 + Gm22480 snoRNA snoRNA MGP_C57BL6NJ_T0001307.1 MGP_C57BL6NJ_G0001210.1 mouse_genomes_project 3 49471499 49472564 + TEC TEC MGP_C57BL6NJ_T0060965.1 MGP_C57BL6NJ_G0027581.1 mouse_genomes_project 3 36075637 36150121 - MGP_C57BL6NJ_P0060965 Trpc3 protein_coding protein_coding MGP_C57BL6NJ_T0060966.1 MGP_C57BL6NJ_G0027581.1 mouse_genomes_project 3 36075717 36076517 - Trpc3 protein_coding processed_transcript MGP_C57BL6NJ_T0060967.1 MGP_C57BL6NJ_G0027581.1 mouse_genomes_project 3 36075717 36076495 - Trpc3 protein_coding processed_transcript MGP_C57BL6NJ_T0060968.1 MGP_C57BL6NJ_G0027581.1 mouse_genomes_project 3 36093112 36095377 - Trpc3 protein_coding retained_intron MGP_C57BL6NJ_T0060969.1 MGP_C57BL6NJ_G0027581.1 mouse_genomes_project 3 36127997 36150121 - Trpc3 protein_coding retained_intron MGP_C57BL6NJ_T0014653.1 MGP_C57BL6NJ_G0012698.1 mouse_genomes_project 3 136292892 136294212 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064699.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155301471 155392294 - MGP_C57BL6NJ_P0064699 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064700.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155301762 155344642 - MGP_C57BL6NJ_P0064700 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064701.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155301762 155344122 - MGP_C57BL6NJ_P0064701 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064702.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155301764 155355315 - MGP_C57BL6NJ_P0064702 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064703.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155304225 155318383 - Prkacb protein_coding retained_intron MGP_C57BL6NJ_T0064704.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155320804 155338431 - MGP_C57BL6NJ_P0064704 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064705.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155320804 155364956 - MGP_C57BL6NJ_P0064705 Prkacb protein_coding protein_coding MGP_C57BL6NJ_T0064706.1 MGP_C57BL6NJ_G0028393.1 mouse_genomes_project 3 155388851 155392324 - Prkacb protein_coding retained_intron MGP_C57BL6NJ_T0014303.1 MGP_C57BL6NJ_G0012348.1 mouse_genomes_project 3 25970722 25971110 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007821.1 MGP_C57BL6NJ_G0006397.1 mouse_genomes_project 3 108191356 108192675 + Gm43062 lincRNA lincRNA MGP_C57BL6NJ_T0014704.1 MGP_C57BL6NJ_G0012749.1 mouse_genomes_project 3 152225113 152225938 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004385.1 MGP_C57BL6NJ_G0003851.1 mouse_genomes_project 3 41210829 41212249 - Gm31266 antisense antisense MGP_C57BL6NJ_T0062575.1 MGP_C57BL6NJ_G0027918.1 mouse_genomes_project 3 96471670 96473614 - MGP_C57BL6NJ_P0062575 Sprr1a protein_coding protein_coding MGP_C57BL6NJ_T0063082.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101336894 101374043 - MGP_C57BL6NJ_P0063082 Gpr89 protein_coding protein_coding MGP_C57BL6NJ_T0063083.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101337204 101361600 - Gpr89 protein_coding processed_transcript MGP_C57BL6NJ_T0063084.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101340099 101344860 - Gpr89 protein_coding retained_intron MGP_C57BL6NJ_T0063085.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101349265 101367245 - Gpr89 protein_coding processed_transcript MGP_C57BL6NJ_T0063086.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101351170 101366134 - Gpr89 protein_coding processed_transcript MGP_C57BL6NJ_T0063087.1 MGP_C57BL6NJ_G0028053.1 mouse_genomes_project 3 101351170 101374009 - MGP_C57BL6NJ_P0063087 Gpr89 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010785.1 MGP_C57BL6NJ_G0008870.1 mouse_genomes_project 3 129059770 129059889 - Mir760 miRNA miRNA MGP_C57BL6NJ_T0001532.1 MGP_C57BL6NJ_G0001432.1 mouse_genomes_project 3 166589597 166590796 - TEC TEC MGP_C57BL6NJ_T0001507.1 MGP_C57BL6NJ_G0001407.1 mouse_genomes_project 3 156010588 156015210 - TEC TEC MGP_C57BL6NJ_T0064262.1 MGP_C57BL6NJ_G0028305.1 mouse_genomes_project 3 140155218 140174844 + MGP_C57BL6NJ_P0064262 Gimd1 protein_coding protein_coding MGP_C57BL6NJ_T0064263.1 MGP_C57BL6NJ_G0028305.1 mouse_genomes_project 3 140159752 140174125 + MGP_C57BL6NJ_P0064263 Gimd1 protein_coding protein_coding MGP_C57BL6NJ_T0064061.1 MGP_C57BL6NJ_G0028273.1 mouse_genomes_project 3 133432703 133514563 + MGP_C57BL6NJ_P0064061 Arsj protein_coding protein_coding MGP_C57BL6NJ_T0100240.1 MGP_C57BL6NJ_G0038286.1 mouse_genomes_project 3 16379390 16379554 - Gm23686 snRNA snRNA MGP_C57BL6NJ_T0014543.1 MGP_C57BL6NJ_G0012588.1 mouse_genomes_project 3 100806200 100806652 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062093.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92086358 92095292 + Arhgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0062094.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92086563 92098054 + Arhgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0062095.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92086695 92128133 + MGP_C57BL6NJ_P0062095 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062096.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92095135 92098216 + Arhgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0062097.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92095323 92114811 + MGP_C57BL6NJ_P0062097 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062098.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92096081 92115715 + MGP_C57BL6NJ_P0062098 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062099.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92096857 92128736 + MGP_C57BL6NJ_P0062099 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062100.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92096857 92129256 + MGP_C57BL6NJ_P0062100 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062101.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92097231 92128099 + MGP_C57BL6NJ_P0062101 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062102.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102408 92128067 + MGP_C57BL6NJ_P0062102 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062103.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102421 92120740 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062104.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102542 92128067 + MGP_C57BL6NJ_P0062104 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062105.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102575 92129254 + MGP_C57BL6NJ_P0062105 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062106.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102743 92115678 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062107.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92102831 92114276 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062108.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92103742 92114142 + MGP_C57BL6NJ_P0062108 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062109.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92104569 92114833 + MGP_C57BL6NJ_P0062109 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062110.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92110657 92114192 + MGP_C57BL6NJ_P0062110 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062111.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92110684 92113317 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062112.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92110688 92114208 + MGP_C57BL6NJ_P0062112 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062113.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92110715 92121912 + MGP_C57BL6NJ_P0062113 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062114.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92110786 92113550 + MGP_C57BL6NJ_P0062114 Arhgef2 protein_coding protein_coding MGP_C57BL6NJ_T0062115.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92113126 92115878 + Arhgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0062116.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92113411 92114806 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062117.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92113948 92114854 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062118.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92114133 92119033 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062119.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92115538 92116292 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062120.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92123629 92125116 + Arhgef2 protein_coding retained_intron MGP_C57BL6NJ_T0062121.1 MGP_C57BL6NJ_G0027823.1 mouse_genomes_project 3 92125135 92128169 + Arhgef2 protein_coding processed_transcript MGP_C57BL6NJ_T0061015.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36892089 36906760 - MGP_C57BL6NJ_P0061015 Nudt6 protein_coding protein_coding MGP_C57BL6NJ_T0061016.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36892165 36906770 - MGP_C57BL6NJ_P0061016 Nudt6 protein_coding protein_coding MGP_C57BL6NJ_T0061017.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36892258 36897855 - Nudt6 protein_coding processed_transcript MGP_C57BL6NJ_T0061018.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36892276 36906750 - MGP_C57BL6NJ_P0061018 Nudt6 protein_coding protein_coding MGP_C57BL6NJ_T0061019.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36892535 36906753 - MGP_C57BL6NJ_P0061019 Nudt6 protein_coding protein_coding MGP_C57BL6NJ_T0061020.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36896687 36906737 - MGP_C57BL6NJ_P0061020 Nudt6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061021.1 MGP_C57BL6NJ_G0027589.1 mouse_genomes_project 3 36899550 36906746 - MGP_C57BL6NJ_P0061021 Nudt6 protein_coding protein_coding MGP_C57BL6NJ_T0060579.1 MGP_C57BL6NJ_G0027511.1 mouse_genomes_project 3 17896764 17917225 - MGP_C57BL6NJ_P0060579 1700064H15Rik protein_coding protein_coding MGP_C57BL6NJ_T0001509.1 MGP_C57BL6NJ_G0001409.1 mouse_genomes_project 3 157266720 157267260 + TEC TEC MGP_C57BL6NJ_T0103087.1 MGP_C57BL6NJ_G0040881.1 mouse_genomes_project 3 94190892 94192976 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014438.1 MGP_C57BL6NJ_G0012483.1 mouse_genomes_project 3 69273028 69273604 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004561.1 MGP_C57BL6NJ_G0003972.1 mouse_genomes_project 3 161979247 161979879 + Gm16231 antisense antisense MGP_C57BL6NJ_T0014423.1 MGP_C57BL6NJ_G0012468.1 mouse_genomes_project 3 65179976 65180930 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007659.1 MGP_C57BL6NJ_G0006276.1 mouse_genomes_project 3 33084082 33119823 - 4930431L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007660.1 MGP_C57BL6NJ_G0006276.1 mouse_genomes_project 3 33088243 33089209 - 4930431L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0064905.1 MGP_C57BL6NJ_G0028420.1 mouse_genomes_project 3 163982520 164268488 - MGP_C57BL6NJ_P0064905 Tnni3k protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064906.1 MGP_C57BL6NJ_G0028420.1 mouse_genomes_project 3 163982528 164268488 - MGP_C57BL6NJ_P0064906 Tnni3k protein_coding protein_coding MGP_C57BL6NJ_T0064907.1 MGP_C57BL6NJ_G0028420.1 mouse_genomes_project 3 164244754 164268431 - Tnni3k protein_coding retained_intron MGP_C57BL6NJ_T0063261.1 MGP_C57BL6NJ_G0028100.1 mouse_genomes_project 3 107907327 108049423 - MGP_C57BL6NJ_P0063261 Sycp1 protein_coding protein_coding MGP_C57BL6NJ_T0063262.1 MGP_C57BL6NJ_G0028100.1 mouse_genomes_project 3 107907533 107918875 - Sycp1 protein_coding processed_transcript MGP_C57BL6NJ_T0063263.1 MGP_C57BL6NJ_G0028100.1 mouse_genomes_project 3 107907569 108049423 - MGP_C57BL6NJ_P0063263 Sycp1 protein_coding protein_coding MGP_C57BL6NJ_T0063264.1 MGP_C57BL6NJ_G0028100.1 mouse_genomes_project 3 108034353 108049413 - MGP_C57BL6NJ_P0063264 Sycp1 protein_coding protein_coding MGP_C57BL6NJ_T0010763.1 MGP_C57BL6NJ_G0008848.1 mouse_genomes_project 3 92004771 92004853 - Mir1905 miRNA miRNA MGP_C57BL6NJ_T0014662.1 MGP_C57BL6NJ_G0012707.1 mouse_genomes_project 3 140186033 140186421 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099386.1 MGP_C57BL6NJ_G0037443.1 mouse_genomes_project 3 98707227 98708105 - Gm43774 sense_intronic sense_intronic MGP_C57BL6NJ_T0011813.1 MGP_C57BL6NJ_G0009898.1 mouse_genomes_project 3 133222266 133222534 - Gm26275 misc_RNA misc_RNA MGP_C57BL6NJ_T0063622.1 MGP_C57BL6NJ_G0028184.1 mouse_genomes_project 3 113827822 113833264 + MGP_C57BL6NJ_P0063622 Amigo1 protein_coding protein_coding MGP_C57BL6NJ_T0063623.1 MGP_C57BL6NJ_G0028184.1 mouse_genomes_project 3 113827837 113833265 + MGP_C57BL6NJ_P0063623 Amigo1 protein_coding protein_coding MGP_C57BL6NJ_T0063624.1 MGP_C57BL6NJ_G0028184.1 mouse_genomes_project 3 113827845 113833774 + MGP_C57BL6NJ_P0063624 Amigo1 protein_coding protein_coding MGP_C57BL6NJ_T0063625.1 MGP_C57BL6NJ_G0028184.1 mouse_genomes_project 3 113829530 113833263 + MGP_C57BL6NJ_P0063625 Amigo1 protein_coding protein_coding MGP_C57BL6NJ_T0063626.1 MGP_C57BL6NJ_G0028184.1 mouse_genomes_project 3 113829588 113833255 + MGP_C57BL6NJ_P0063626 Amigo1 protein_coding protein_coding MGP_C57BL6NJ_T0001363.1 MGP_C57BL6NJ_G0001264.1 mouse_genomes_project 3 64810137 64810623 + TEC TEC MGP_C57BL6NJ_T0007878.1 MGP_C57BL6NJ_G0006441.1 mouse_genomes_project 3 138407874 138409229 - Gm43349 lincRNA lincRNA MGP_C57BL6NJ_T0099556.1 MGP_C57BL6NJ_G0037603.1 mouse_genomes_project 3 66470216 66754852 + sense_overlapping sense_overlapping MGP_C57BL6NJ_T0061994.1 MGP_C57BL6NJ_G0027806.1 mouse_genomes_project 3 91684508 91705569 - MGP_C57BL6NJ_P0061994 Tsacc protein_coding protein_coding MGP_C57BL6NJ_T0061995.1 MGP_C57BL6NJ_G0027806.1 mouse_genomes_project 3 91684511 91705408 - MGP_C57BL6NJ_P0061995 Tsacc protein_coding protein_coding MGP_C57BL6NJ_T0061996.1 MGP_C57BL6NJ_G0027806.1 mouse_genomes_project 3 91702281 91705466 - Tsacc protein_coding retained_intron MGP_C57BL6NJ_T0014719.1 MGP_C57BL6NJ_G0012764.1 mouse_genomes_project 3 160953314 160954021 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060705.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593790 27595770 + MGP_C57BL6NJ_P0060705 Rpl22l1 protein_coding protein_coding MGP_C57BL6NJ_T0060706.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593823 27595779 + MGP_C57BL6NJ_P0060706 Rpl22l1 protein_coding protein_coding MGP_C57BL6NJ_T0060707.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593862 27595770 + Rpl22l1 protein_coding retained_intron MGP_C57BL6NJ_T0060708.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593864 27595777 + MGP_C57BL6NJ_P0060708 Rpl22l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060709.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593919 27595055 + Rpl22l1 protein_coding processed_transcript MGP_C57BL6NJ_T0060710.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27593951 27595649 + Rpl22l1 protein_coding processed_transcript MGP_C57BL6NJ_T0060711.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27594017 27595770 + Rpl22l1 protein_coding processed_transcript MGP_C57BL6NJ_T0060712.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27594812 27595770 + Rpl22l1 protein_coding retained_intron MGP_C57BL6NJ_T0060713.1 MGP_C57BL6NJ_G0027535.1 mouse_genomes_project 3 27594853 27595771 + Rpl22l1 protein_coding retained_intron MGP_C57BL6NJ_T0007828.1 MGP_C57BL6NJ_G0006402.1 mouse_genomes_project 3 112340827 112396267 - Gm35507 lincRNA lincRNA MGP_C57BL6NJ_T0001394.1 MGP_C57BL6NJ_G0001295.1 mouse_genomes_project 3 97455462 97456661 + TEC TEC MGP_C57BL6NJ_T0063405.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110082141 110107979 - MGP_C57BL6NJ_P0063405 Mov10 protein_coding protein_coding MGP_C57BL6NJ_T0063406.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110082141 110107721 - MGP_C57BL6NJ_P0063406 Mov10 protein_coding protein_coding MGP_C57BL6NJ_T0063407.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110082141 110107979 - MGP_C57BL6NJ_P0063407 Mov10 protein_coding protein_coding MGP_C57BL6NJ_T0063408.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110082141 110107658 - MGP_C57BL6NJ_P0063408 Mov10 protein_coding protein_coding MGP_C57BL6NJ_T0063409.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110082141 110107979 - MGP_C57BL6NJ_P0063409 Mov10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063410.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110094049 110106770 - Mov10 protein_coding processed_transcript MGP_C57BL6NJ_T0063411.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110094090 110107979 - MGP_C57BL6NJ_P0063411 Mov10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063412.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110094907 110107532 - Mov10 protein_coding retained_intron MGP_C57BL6NJ_T0063413.1 MGP_C57BL6NJ_G0028127.1 mouse_genomes_project 3 110094928 110107717 - Mov10 protein_coding processed_transcript MGP_C57BL6NJ_T0061746.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85267488 85299700 + MGP_C57BL6NJ_P0061746 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0061747.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85267516 85310832 + MGP_C57BL6NJ_P0061747 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0061748.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85267516 85292476 + MGP_C57BL6NJ_P0061748 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0061749.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85267614 85299636 + MGP_C57BL6NJ_P0061749 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0061750.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85267631 85310832 + MGP_C57BL6NJ_P0061750 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0061751.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85293227 85298044 + Map9 protein_coding retained_intron MGP_C57BL6NJ_T0061752.1 MGP_C57BL6NJ_G0027746.1 mouse_genomes_project 3 85293588 85299418 + MGP_C57BL6NJ_P0061752 Map9 protein_coding protein_coding MGP_C57BL6NJ_T0004523.1 MGP_C57BL6NJ_G0003944.1 mouse_genomes_project 3 135048610 135050344 + Gm43653 antisense antisense MGP_C57BL6NJ_T0062357.1 MGP_C57BL6NJ_G0027865.1 mouse_genomes_project 3 93394664 93404961 + MGP_C57BL6NJ_P0062357 Ube2q1 protein_coding protein_coding MGP_C57BL6NJ_T0062358.1 MGP_C57BL6NJ_G0027865.1 mouse_genomes_project 3 93394812 93398372 + Ube2q1 protein_coding retained_intron MGP_C57BL6NJ_T0060449.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6394849 6483094 - MGP_C57BL6NJ_P0060449 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060450.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6397882 6482849 - MGP_C57BL6NJ_P0060450 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060451.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6398854 6440285 - MGP_C57BL6NJ_P0060451 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060452.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6400987 6440287 - MGP_C57BL6NJ_P0060452 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060453.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6401155 6482810 - MGP_C57BL6NJ_P0060453 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060454.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6401251 6482794 - MGP_C57BL6NJ_P0060454 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060455.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6401263 6438520 - MGP_C57BL6NJ_P0060455 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060456.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6401338 6482849 - MGP_C57BL6NJ_P0060456 Tpd52 protein_coding protein_coding MGP_C57BL6NJ_T0060457.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6419085 6482808 - Tpd52 protein_coding processed_transcript MGP_C57BL6NJ_T0060458.1 MGP_C57BL6NJ_G0027472.1 mouse_genomes_project 3 6419147 6482849 - MGP_C57BL6NJ_P0060458 Tpd52 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061974.1 MGP_C57BL6NJ_G0027800.1 mouse_genomes_project 3 91442493 91444469 - MGP_C57BL6NJ_P0061974 Apoa1bp protein_coding protein_coding MGP_C57BL6NJ_T0014259.1 MGP_C57BL6NJ_G0012304.1 mouse_genomes_project 3 10770181 10770524 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014233.1 MGP_C57BL6NJ_G0012278.1 mouse_genomes_project 3 3759565 3760547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004511.1 MGP_C57BL6NJ_G0003934.1 mouse_genomes_project 3 129156777 129177363 - Gm42835 antisense antisense MGP_C57BL6NJ_T0102239.1 MGP_C57BL6NJ_G0040234.1 mouse_genomes_project 3 98585653 98586427 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102240.1 MGP_C57BL6NJ_G0040234.1 mouse_genomes_project 3 98585844 98586261 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014252.1 MGP_C57BL6NJ_G0012297.1 mouse_genomes_project 3 8406708 8407219 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063048.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145228 101156406 + MGP_C57BL6NJ_P0063048 Pias3 protein_coding protein_coding MGP_C57BL6NJ_T0063049.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145286 101155918 + MGP_C57BL6NJ_P0063049 Pias3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063050.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145920 101148537 + MGP_C57BL6NJ_P0063050 Pias3 protein_coding protein_coding MGP_C57BL6NJ_T0063051.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145927 101156514 + MGP_C57BL6NJ_P0063051 Pias3 protein_coding protein_coding MGP_C57BL6NJ_T0063052.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145961 101156417 + MGP_C57BL6NJ_P0063052 Pias3 protein_coding protein_coding MGP_C57BL6NJ_T0063053.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101145977 101148828 + Pias3 protein_coding retained_intron MGP_C57BL6NJ_T0063054.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101146038 101150536 + MGP_C57BL6NJ_P0063054 Pias3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063055.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101149322 101154265 + Pias3 protein_coding retained_intron MGP_C57BL6NJ_T0063056.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101150197 101154330 + Pias3 protein_coding retained_intron MGP_C57BL6NJ_T0063057.1 MGP_C57BL6NJ_G0028047.1 mouse_genomes_project 3 101154609 101155577 + MGP_C57BL6NJ_P0063057 Pias3 protein_coding protein_coding MGP_C57BL6NJ_T0063877.1 MGP_C57BL6NJ_G0028238.1 mouse_genomes_project 3 123650978 123693955 - MGP_C57BL6NJ_P0063877 Plppr4 protein_coding protein_coding MGP_C57BL6NJ_T0063878.1 MGP_C57BL6NJ_G0028238.1 mouse_genomes_project 3 123652948 123693955 - Plppr4 protein_coding retained_intron MGP_C57BL6NJ_T0063879.1 MGP_C57BL6NJ_G0028238.1 mouse_genomes_project 3 123653762 123693327 - MGP_C57BL6NJ_P0063879 Plppr4 protein_coding protein_coding MGP_C57BL6NJ_T0060522.1 MGP_C57BL6NJ_G0027493.1 mouse_genomes_project 3 12577261 12598515 + MGP_C57BL6NJ_P0060522 Car13 protein_coding protein_coding MGP_C57BL6NJ_T0014485.1 MGP_C57BL6NJ_G0012530.1 mouse_genomes_project 3 82303341 82303988 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014361.1 MGP_C57BL6NJ_G0012406.1 mouse_genomes_project 3 46718013 46718255 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001299.1 MGP_C57BL6NJ_G0001202.1 mouse_genomes_project 3 42248064 42248609 + TEC TEC MGP_C57BL6NJ_T0007653.1 MGP_C57BL6NJ_G0006270.1 mouse_genomes_project 3 27589928 27593691 - Gm32950 lincRNA lincRNA MGP_C57BL6NJ_T0001256.1 MGP_C57BL6NJ_G0001159.1 mouse_genomes_project 3 28095828 28097190 + TEC TEC MGP_C57BL6NJ_T0014652.1 MGP_C57BL6NJ_G0012697.1 mouse_genomes_project 3 135536670 135537104 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062167.1 MGP_C57BL6NJ_G0027832.1 mouse_genomes_project 3 92633219 92666435 - MGP_C57BL6NJ_P0062167 Gm43738 protein_coding protein_coding MGP_C57BL6NJ_T0014217.1 MGP_C57BL6NJ_G0012262.1 mouse_genomes_project 3 352846 353597 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010751.1 MGP_C57BL6NJ_G0008836.1 mouse_genomes_project 3 58502027 58502141 + Mir6377 miRNA miRNA MGP_C57BL6NJ_T0103098.1 MGP_C57BL6NJ_G0040892.1 mouse_genomes_project 3 98308772 98308968 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0062303.1 MGP_C57BL6NJ_G0027853.1 mouse_genomes_project 3 92963218 92968886 + MGP_C57BL6NJ_P0062303 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0062142.1 MGP_C57BL6NJ_G0027828.1 mouse_genomes_project 3 92268841 92436713 + MGP_C57BL6NJ_P0062142 protein_coding protein_coding MGP_C57BL6NJ_T0062143.1 MGP_C57BL6NJ_G0027828.1 mouse_genomes_project 3 92270626 92436708 + MGP_C57BL6NJ_P0062143 protein_coding protein_coding MGP_C57BL6NJ_T0062144.1 MGP_C57BL6NJ_G0027828.1 mouse_genomes_project 3 92270626 92436708 + MGP_C57BL6NJ_P0062144 protein_coding protein_coding MGP_C57BL6NJ_T0062145.1 MGP_C57BL6NJ_G0027828.1 mouse_genomes_project 3 92404105 92424752 + protein_coding retained_intron MGP_C57BL6NJ_T0014267.1 MGP_C57BL6NJ_G0012312.1 mouse_genomes_project 3 12435072 12436080 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103069.1 MGP_C57BL6NJ_G0040863.1 mouse_genomes_project 3 60441705 60441940 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0063603.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113700165 113711659 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063604.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113700165 113712731 - MGP_C57BL6NJ_P0063604 Ampd2 protein_coding protein_coding MGP_C57BL6NJ_T0063605.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113700167 113712755 - MGP_C57BL6NJ_P0063605 Ampd2 protein_coding protein_coding MGP_C57BL6NJ_T0063606.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113700190 113711503 - MGP_C57BL6NJ_P0063606 Ampd2 protein_coding protein_coding MGP_C57BL6NJ_T0063607.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113700847 113701574 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063608.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113701467 113702536 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063609.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113702716 113703999 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063610.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113704571 113705813 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063611.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113704735 113706722 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0063612.1 MGP_C57BL6NJ_G0028180.1 mouse_genomes_project 3 113706025 113711499 - Ampd2 protein_coding retained_intron MGP_C57BL6NJ_T0014602.1 MGP_C57BL6NJ_G0012647.1 mouse_genomes_project 3 118111504 118111805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014229.1 MGP_C57BL6NJ_G0012274.1 mouse_genomes_project 3 1998109 1998383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064455.1 MGP_C57BL6NJ_G0028343.1 mouse_genomes_project 3 146341330 146346639 + Adh4 protein_coding processed_transcript MGP_C57BL6NJ_T0064456.1 MGP_C57BL6NJ_G0028343.1 mouse_genomes_project 3 146341351 146353449 + MGP_C57BL6NJ_P0064456 Adh4 protein_coding protein_coding MGP_C57BL6NJ_T0064457.1 MGP_C57BL6NJ_G0028343.1 mouse_genomes_project 3 146341359 146360648 + MGP_C57BL6NJ_P0064457 Adh4 protein_coding protein_coding MGP_C57BL6NJ_T0010767.1 MGP_C57BL6NJ_G0008852.1 mouse_genomes_project 3 93972226 93972290 + Mir7012 miRNA miRNA MGP_C57BL6NJ_T0014243.1 MGP_C57BL6NJ_G0012288.1 mouse_genomes_project 3 6106635 6106948 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007912.1 MGP_C57BL6NJ_G0006472.1 mouse_genomes_project 3 151734145 151736277 + 1700001N15Rik lincRNA lincRNA MGP_C57BL6NJ_T0061118.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400909 41414483 + MGP_C57BL6NJ_P0061118 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061119.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400952 41414681 + MGP_C57BL6NJ_P0061119 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061120.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400955 41417280 + MGP_C57BL6NJ_P0061120 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061121.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400958 41417739 + MGP_C57BL6NJ_P0061121 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061122.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400959 41417289 + MGP_C57BL6NJ_P0061122 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061123.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400959 41417289 + MGP_C57BL6NJ_P0061123 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061124.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400995 41417289 + MGP_C57BL6NJ_P0061124 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061125.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41400997 41402261 + D3Ertd751e protein_coding retained_intron MGP_C57BL6NJ_T0061126.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41401004 41416010 + MGP_C57BL6NJ_P0061126 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061127.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41401066 41412134 + MGP_C57BL6NJ_P0061127 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061128.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41403011 41414505 + MGP_C57BL6NJ_P0061128 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061129.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41404806 41414521 + MGP_C57BL6NJ_P0061129 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061130.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41405033 41462464 + MGP_C57BL6NJ_P0061130 D3Ertd751e protein_coding protein_coding MGP_C57BL6NJ_T0061131.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41405036 41417307 + MGP_C57BL6NJ_P0061131 D3Ertd751e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061132.1 MGP_C57BL6NJ_G0027606.1 mouse_genomes_project 3 41406904 41414856 + D3Ertd751e protein_coding retained_intron MGP_C57BL6NJ_T0101584.1 MGP_C57BL6NJ_G0039630.1 mouse_genomes_project 3 84780773 84780913 + Gm22531 snoRNA snoRNA MGP_C57BL6NJ_T0061167.1 MGP_C57BL6NJ_G0027613.1 mouse_genomes_project 3 51861880 51870896 - MGP_C57BL6NJ_P0061167 Mgarp protein_coding protein_coding MGP_C57BL6NJ_T0061168.1 MGP_C57BL6NJ_G0027613.1 mouse_genomes_project 3 51861880 51871086 - MGP_C57BL6NJ_P0061168 Mgarp protein_coding protein_coding MGP_C57BL6NJ_T0061169.1 MGP_C57BL6NJ_G0027613.1 mouse_genomes_project 3 51861880 51870874 - MGP_C57BL6NJ_P0061169 Mgarp protein_coding protein_coding MGP_C57BL6NJ_T0061170.1 MGP_C57BL6NJ_G0027613.1 mouse_genomes_project 3 51864324 51870851 - Mgarp protein_coding retained_intron MGP_C57BL6NJ_T0061171.1 MGP_C57BL6NJ_G0027613.1 mouse_genomes_project 3 51864765 51870836 - Mgarp protein_coding processed_transcript MGP_C57BL6NJ_T0010772.1 MGP_C57BL6NJ_G0008857.1 mouse_genomes_project 3 99401257 99401384 - Mir8099-1 miRNA miRNA MGP_C57BL6NJ_T0061651.1 MGP_C57BL6NJ_G0027726.1 mouse_genomes_project 3 77992178 78087341 + MGP_C57BL6NJ_P0061651 Serpini1 protein_coding protein_coding MGP_C57BL6NJ_T0061652.1 MGP_C57BL6NJ_G0027726.1 mouse_genomes_project 3 77992178 78058335 + MGP_C57BL6NJ_P0061652 Serpini1 protein_coding protein_coding MGP_C57BL6NJ_T0061653.1 MGP_C57BL6NJ_G0027726.1 mouse_genomes_project 3 77992192 78051625 + Serpini1 protein_coding processed_transcript MGP_C57BL6NJ_T0061654.1 MGP_C57BL6NJ_G0027726.1 mouse_genomes_project 3 77992209 78057827 + Serpini1 protein_coding retained_intron MGP_C57BL6NJ_T0062626.1 MGP_C57BL6NJ_G0027956.1 mouse_genomes_project 3 97762151 97765070 - MGP_C57BL6NJ_P0062626 protein_coding protein_coding MGP_C57BL6NJ_T0062627.1 MGP_C57BL6NJ_G0027956.1 mouse_genomes_project 3 97762158 97769806 - MGP_C57BL6NJ_P0062627 protein_coding protein_coding MGP_C57BL6NJ_T0010803.1 MGP_C57BL6NJ_G0008888.1 mouse_genomes_project 3 159929935 159930006 - Mir3963 miRNA miRNA MGP_C57BL6NJ_T0061760.1 MGP_C57BL6NJ_G0027749.1 mouse_genomes_project 3 85831543 85845504 - MGP_C57BL6NJ_P0061760 Lrat protein_coding protein_coding MGP_C57BL6NJ_T0014274.1 MGP_C57BL6NJ_G0012319.1 mouse_genomes_project 3 15349399 15349733 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064390.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144475206 144619031 + Ppp3ca protein_coding processed_transcript MGP_C57BL6NJ_T0064391.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144475206 144764704 + MGP_C57BL6NJ_P0064391 Ppp3ca protein_coding protein_coding MGP_C57BL6NJ_T0064392.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144475852 144762756 + MGP_C57BL6NJ_P0064392 Ppp3ca protein_coding protein_coding MGP_C57BL6NJ_T0064393.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144659213 144708705 + Ppp3ca protein_coding processed_transcript MGP_C57BL6NJ_T0064394.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144707638 144710285 + Ppp3ca protein_coding retained_intron MGP_C57BL6NJ_T0064395.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144715152 144717190 + Ppp3ca protein_coding retained_intron MGP_C57BL6NJ_T0064396.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144729536 144755694 + Ppp3ca protein_coding processed_transcript MGP_C57BL6NJ_T0064397.1 MGP_C57BL6NJ_G0028326.1 mouse_genomes_project 3 144730352 144732848 + Ppp3ca protein_coding retained_intron MGP_C57BL6NJ_T0001400.1 MGP_C57BL6NJ_G0001301.1 mouse_genomes_project 3 100635258 100636860 + TEC TEC MGP_C57BL6NJ_T0060704.1 MGP_C57BL6NJ_G0027534.1 mouse_genomes_project 3 27566455 27584416 + MGP_C57BL6NJ_P0060704 Eif5a2 protein_coding protein_coding MGP_C57BL6NJ_T0014490.1 MGP_C57BL6NJ_G0012535.1 mouse_genomes_project 3 85495052 85495551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060930.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35462945 35495410 + MGP_C57BL6NJ_P0060930 Acad9 protein_coding protein_coding MGP_C57BL6NJ_T0060931.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35463033 35473382 + MGP_C57BL6NJ_P0060931 Acad9 protein_coding protein_coding MGP_C57BL6NJ_T0060932.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35463038 35490957 + Acad9 protein_coding retained_intron MGP_C57BL6NJ_T0060933.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35474130 35478068 + Acad9 protein_coding retained_intron MGP_C57BL6NJ_T0060934.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35475813 35488270 + MGP_C57BL6NJ_P0060934 Acad9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060935.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35477507 35487922 + Acad9 protein_coding retained_intron MGP_C57BL6NJ_T0060936.1 MGP_C57BL6NJ_G0027573.1 mouse_genomes_project 3 35477582 35490957 + Acad9 protein_coding retained_intron MGP_C57BL6NJ_T0004428.1 MGP_C57BL6NJ_G0003884.1 mouse_genomes_project 3 92205039 92205620 + Gm17146 antisense antisense MGP_C57BL6NJ_T0007930.1 MGP_C57BL6NJ_G0006487.1 mouse_genomes_project 3 154899150 154910928 - Gm10636 lincRNA lincRNA MGP_C57BL6NJ_T0103107.1 MGP_C57BL6NJ_G0040901.1 mouse_genomes_project 3 103280648 103290656 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0063643.1 MGP_C57BL6NJ_G0028190.1 mouse_genomes_project 3 114015266 114031810 + MGP_C57BL6NJ_P0063643 Mybphl protein_coding protein_coding MGP_C57BL6NJ_T0001512.1 MGP_C57BL6NJ_G0001412.1 mouse_genomes_project 3 160804813 160808264 + TEC TEC MGP_C57BL6NJ_T0061983.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535626 91565328 + MGP_C57BL6NJ_P0061983 Mef2d protein_coding protein_coding MGP_C57BL6NJ_T0061984.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535670 91563172 + MGP_C57BL6NJ_P0061984 Mef2d protein_coding protein_coding MGP_C57BL6NJ_T0061985.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535826 91561897 + MGP_C57BL6NJ_P0061985 Mef2d protein_coding protein_coding MGP_C57BL6NJ_T0061986.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535826 91561897 + MGP_C57BL6NJ_P0061986 Mef2d protein_coding protein_coding MGP_C57BL6NJ_T0061987.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535828 91549256 + Mef2d protein_coding retained_intron MGP_C57BL6NJ_T0061988.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91535860 91561595 + MGP_C57BL6NJ_P0061988 Mef2d protein_coding unknown_likely_coding MGP_C57BL6NJ_T0061989.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91556209 91562027 + Mef2d protein_coding processed_transcript MGP_C57BL6NJ_T0061990.1 MGP_C57BL6NJ_G0027803.1 mouse_genomes_project 3 91561493 91562148 + Mef2d protein_coding processed_transcript MGP_C57BL6NJ_T0014424.1 MGP_C57BL6NJ_G0012469.1 mouse_genomes_project 3 65246812 65247102 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007822.1 MGP_C57BL6NJ_G0006398.1 mouse_genomes_project 3 109579105 109595042 - Gm5546 lincRNA lincRNA MGP_C57BL6NJ_T0063866.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123144926 123196678 + MGP_C57BL6NJ_P0063866 Frrs1 protein_coding protein_coding MGP_C57BL6NJ_T0063867.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123145029 123181629 + MGP_C57BL6NJ_P0063867 Frrs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0063868.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123165792 123204353 + MGP_C57BL6NJ_P0063868 Frrs1 protein_coding protein_coding MGP_C57BL6NJ_T0063869.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123181549 123187461 + Frrs1 protein_coding retained_intron MGP_C57BL6NJ_T0063870.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123182329 123189931 + Frrs1 protein_coding retained_intron MGP_C57BL6NJ_T0063871.1 MGP_C57BL6NJ_G0028235.1 mouse_genomes_project 3 123187449 123195638 + MGP_C57BL6NJ_P0063871 Frrs1 protein_coding protein_coding MGP_C57BL6NJ_T0101609.1 MGP_C57BL6NJ_G0039655.1 mouse_genomes_project 3 122272597 122272729 - Gm26344 snoRNA snoRNA MGP_C57BL6NJ_T0014660.1 MGP_C57BL6NJ_G0012705.1 mouse_genomes_project 3 138804369 138805387 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001488.1 MGP_C57BL6NJ_G0001388.1 mouse_genomes_project 3 138643075 138645333 + TEC TEC MGP_C57BL6NJ_T0061045.1 MGP_C57BL6NJ_G0027596.1 mouse_genomes_project 3 40257198 40272868 + MGP_C57BL6NJ_P0061045 Slc25a31 protein_coding protein_coding MGP_C57BL6NJ_T0101587.1 MGP_C57BL6NJ_G0039633.1 mouse_genomes_project 3 89358485 89358553 - Snord73a snoRNA snoRNA MGP_C57BL6NJ_T0061839.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89182944 89298656 + Sh3d19 protein_coding processed_transcript MGP_C57BL6NJ_T0061841.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89253879 89298412 + Sh3d19 protein_coding processed_transcript MGP_C57BL6NJ_T0061842.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89255617 89298700 + Sh3d19 protein_coding processed_transcript MGP_C57BL6NJ_T0061843.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89255725 89298689 + Sh3d19 protein_coding processed_transcript MGP_C57BL6NJ_T0061844.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89285668 89350118 + MGP_C57BL6NJ_P0061844 Sh3d19 protein_coding protein_coding MGP_C57BL6NJ_T0061845.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89299551 89350114 + MGP_C57BL6NJ_P0061845 Sh3d19 protein_coding protein_coding MGP_C57BL6NJ_T0061846.1 MGP_C57BL6NJ_G0027770.1 mouse_genomes_project 3 89344920 89348702 + Sh3d19 protein_coding retained_intron MGP_C57BL6NJ_T0099382.1 MGP_C57BL6NJ_G0037440.1 mouse_genomes_project 3 88739957 88758947 - Gm15535 sense_intronic sense_intronic MGP_C57BL6NJ_T0099383.1 MGP_C57BL6NJ_G0037440.1 mouse_genomes_project 3 88743154 88758856 - Gm15535 sense_intronic sense_intronic MGP_C57BL6NJ_T0064248.1 MGP_C57BL6NJ_G0028301.1 mouse_genomes_project 3 138808683 138825432 - MGP_C57BL6NJ_P0064248 Cyp2u1 protein_coding protein_coding MGP_C57BL6NJ_T0064249.1 MGP_C57BL6NJ_G0028301.1 mouse_genomes_project 3 138815495 138825408 - MGP_C57BL6NJ_P0064249 Cyp2u1 protein_coding protein_coding MGP_C57BL6NJ_T0064250.1 MGP_C57BL6NJ_G0028301.1 mouse_genomes_project 3 138816631 138825435 - Cyp2u1 protein_coding processed_transcript MGP_C57BL6NJ_T0064967.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511614 167543748 + MGP_C57BL6NJ_P0064967 Lrrc40 protein_coding protein_coding MGP_C57BL6NJ_T0064968.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511652 167542350 + MGP_C57BL6NJ_P0064968 Lrrc40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064969.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511654 167542350 + MGP_C57BL6NJ_P0064969 Lrrc40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064970.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511674 167527080 + MGP_C57BL6NJ_P0064970 Lrrc40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064971.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511702 167527069 + MGP_C57BL6NJ_P0064971 Lrrc40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064972.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167511812 167527015 + MGP_C57BL6NJ_P0064972 Lrrc40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064973.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167537520 167541807 + Lrrc40 protein_coding retained_intron MGP_C57BL6NJ_T0064974.1 MGP_C57BL6NJ_G0028429.1 mouse_genomes_project 3 167537921 167539299 + Lrrc40 protein_coding retained_intron MGP_C57BL6NJ_T0014663.1 MGP_C57BL6NJ_G0012708.1 mouse_genomes_project 3 140384131 140386314 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001257.1 MGP_C57BL6NJ_G0001160.1 mouse_genomes_project 3 29127871 29129505 - TEC TEC MGP_C57BL6NJ_T0011794.1 MGP_C57BL6NJ_G0009879.1 mouse_genomes_project 3 23214762 23215028 + Gm24062 misc_RNA misc_RNA MGP_C57BL6NJ_T0014308.1 MGP_C57BL6NJ_G0012353.1 mouse_genomes_project 3 29554727 29555199 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007611.1 MGP_C57BL6NJ_G0006242.1 mouse_genomes_project 3 2319175 2323676 + Gm17308 lincRNA lincRNA MGP_C57BL6NJ_T0011799.1 MGP_C57BL6NJ_G0009884.1 mouse_genomes_project 3 43803758 43804054 + Gm25714 misc_RNA misc_RNA MGP_C57BL6NJ_T0062593.1 MGP_C57BL6NJ_G0027934.1 mouse_genomes_project 3 96807919 96809594 - MGP_C57BL6NJ_P0062593 Lce1j protein_coding protein_coding MGP_C57BL6NJ_T0062594.1 MGP_C57BL6NJ_G0027934.1 mouse_genomes_project 3 96808129 96808549 - MGP_C57BL6NJ_P0062594 Lce1j protein_coding protein_coding MGP_C57BL6NJ_T0101624.1 MGP_C57BL6NJ_G0039670.1 mouse_genomes_project 3 162797873 162797989 + Gm22206 snoRNA snoRNA MGP_C57BL6NJ_T0014334.1 MGP_C57BL6NJ_G0012379.1 mouse_genomes_project 3 37098590 37099236 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001389.1 MGP_C57BL6NJ_G0001290.1 mouse_genomes_project 3 92223431 92224371 - TEC TEC MGP_C57BL6NJ_T0103084.1 MGP_C57BL6NJ_G0040878.1 mouse_genomes_project 3 91937432 91938003 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0060554.1 MGP_C57BL6NJ_G0027505.1 mouse_genomes_project 3 16256973 16448362 - MGP_C57BL6NJ_P0060554 Cyp7b1 protein_coding protein_coding MGP_C57BL6NJ_T0062283.1 MGP_C57BL6NJ_G0027850.1 mouse_genomes_project 3 92930133 92934772 - MGP_C57BL6NJ_P0062283 Efna4 protein_coding protein_coding MGP_C57BL6NJ_T0001258.1 MGP_C57BL6NJ_G0001161.1 mouse_genomes_project 3 29195581 29198840 - TEC TEC MGP_C57BL6NJ_T0062643.1 MGP_C57BL6NJ_G0027966.1 mouse_genomes_project 3 98536688 98561985 + MGP_C57BL6NJ_P0062643 Rorc protein_coding protein_coding MGP_C57BL6NJ_T0062644.1 MGP_C57BL6NJ_G0027966.1 mouse_genomes_project 3 98541328 98562421 + MGP_C57BL6NJ_P0062644 Rorc protein_coding protein_coding MGP_C57BL6NJ_T0062645.1 MGP_C57BL6NJ_G0027966.1 mouse_genomes_project 3 98541356 98561791 + Rorc protein_coding retained_intron MGP_C57BL6NJ_T0062646.1 MGP_C57BL6NJ_G0027966.1 mouse_genomes_project 3 98541412 98561793 + MGP_C57BL6NJ_P0062646 Rorc protein_coding protein_coding MGP_C57BL6NJ_T0001340.1 MGP_C57BL6NJ_G0001241.1 mouse_genomes_project 3 53663366 53666039 + TEC TEC MGP_C57BL6NJ_T0001430.1 MGP_C57BL6NJ_G0001331.1 mouse_genomes_project 3 125325747 125327981 + TEC TEC MGP_C57BL6NJ_T0060824.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31694769 31733081 - MGP_C57BL6NJ_P0060824 Gnb4 protein_coding protein_coding MGP_C57BL6NJ_T0060825.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31698435 31733081 - Gnb4 protein_coding retained_intron MGP_C57BL6NJ_T0060826.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31698435 31733081 - MGP_C57BL6NJ_P0060826 Gnb4 protein_coding protein_coding MGP_C57BL6NJ_T0060827.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31699492 31733081 - MGP_C57BL6NJ_P0060827 Gnb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0060828.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31702143 31712616 - Gnb4 protein_coding retained_intron MGP_C57BL6NJ_T0060829.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31705571 31733081 - MGP_C57BL6NJ_P0060829 Gnb4 protein_coding protein_coding MGP_C57BL6NJ_T0060830.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31706648 31733081 - Gnb4 protein_coding retained_intron MGP_C57BL6NJ_T0060831.1 MGP_C57BL6NJ_G0027558.1 mouse_genomes_project 3 31714281 31733081 - Gnb4 protein_coding retained_intron MGP_C57BL6NJ_T0103111.1 MGP_C57BL6NJ_G0040905.1 mouse_genomes_project 3 103567604 103571252 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004361.1 MGP_C57BL6NJ_G0003835.1 mouse_genomes_project 3 29685430 29693234 + Gm15462 antisense antisense MGP_C57BL6NJ_T0004506.1 MGP_C57BL6NJ_G0003931.1 mouse_genomes_project 3 122887592 122889353 - Gm42893 antisense antisense MGP_C57BL6NJ_T0061761.1 MGP_C57BL6NJ_G0027750.1 mouse_genomes_project 3 85948175 85956659 + MGP_C57BL6NJ_P0061761 Fgg protein_coding protein_coding MGP_C57BL6NJ_T0061762.1 MGP_C57BL6NJ_G0027750.1 mouse_genomes_project 3 85948252 85955217 + MGP_C57BL6NJ_P0061762 Fgg protein_coding protein_coding MGP_C57BL6NJ_T0001333.1 MGP_C57BL6NJ_G0001234.1 mouse_genomes_project 3 52506150 52508367 - TEC TEC MGP_C57BL6NJ_T0063803.1 MGP_C57BL6NJ_G0028223.1 mouse_genomes_project 3 122321391 122342290 - MGP_C57BL6NJ_P0063803 Vcam1 protein_coding protein_coding MGP_C57BL6NJ_T0063804.1 MGP_C57BL6NJ_G0028223.1 mouse_genomes_project 3 122329261 122333349 - Vcam1 protein_coding retained_intron MGP_C57BL6NJ_T0063805.1 MGP_C57BL6NJ_G0028223.1 mouse_genomes_project 3 122334908 122342059 - MGP_C57BL6NJ_P0063805 Vcam1 protein_coding protein_coding MGP_C57BL6NJ_T0063806.1 MGP_C57BL6NJ_G0028223.1 mouse_genomes_project 3 122337246 122341539 - MGP_C57BL6NJ_P0063806 Vcam1 protein_coding protein_coding MGP_C57BL6NJ_T0099390.1 MGP_C57BL6NJ_G0037447.1 mouse_genomes_project 3 103964570 103968033 + Gm42717 sense_intronic sense_intronic MGP_C57BL6NJ_T0061288.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897056 55922271 + MGP_C57BL6NJ_P0061288 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0061289.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897061 55914275 + Spg20 protein_coding retained_intron MGP_C57BL6NJ_T0061290.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897077 55922260 + MGP_C57BL6NJ_P0061290 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0061291.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897086 55899201 + Spg20 protein_coding retained_intron MGP_C57BL6NJ_T0061292.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897114 55922266 + MGP_C57BL6NJ_P0061292 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0061293.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897335 55914643 + MGP_C57BL6NJ_P0061293 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0061294.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55897544 55902210 + MGP_C57BL6NJ_P0061294 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0061295.1 MGP_C57BL6NJ_G0027639.1 mouse_genomes_project 3 55901125 55902282 + MGP_C57BL6NJ_P0061295 Spg20 protein_coding protein_coding MGP_C57BL6NJ_T0063113.1 MGP_C57BL6NJ_G0028060.1 mouse_genomes_project 3 102248444 102277584 + MGP_C57BL6NJ_P0063113 Fmo5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0063114.1 MGP_C57BL6NJ_G0028060.1 mouse_genomes_project 3 102254568 102255653 + Fmo5 protein_coding retained_intron MGP_C57BL6NJ_T0063115.1 MGP_C57BL6NJ_G0028060.1 mouse_genomes_project 3 102254603 102264723 + Fmo5 protein_coding processed_transcript MGP_C57BL6NJ_T0014293.1 MGP_C57BL6NJ_G0012338.1 mouse_genomes_project 3 20027801 20028573 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014661.1 MGP_C57BL6NJ_G0012706.1 mouse_genomes_project 3 138889211 138889406 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100243.1 MGP_C57BL6NJ_G0038289.1 mouse_genomes_project 3 32176756 32176913 + Gm23214 snRNA snRNA MGP_C57BL6NJ_T0099410.1 MGP_C57BL6NJ_G0037467.1 mouse_genomes_project 3 109052689 109054781 + Gm43065 sense_intronic sense_intronic MGP_C57BL6NJ_T0004565.1 MGP_C57BL6NJ_G0003975.1 mouse_genomes_project 3 163899590 163902276 - Gm20389 antisense antisense MGP_C57BL6NJ_T0014357.1 MGP_C57BL6NJ_G0012402.1 mouse_genomes_project 3 45329401 45329651 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0060417.1 MGP_C57BL6NJ_G0027461.1 mouse_genomes_project 3 596784 787044 + MGP_C57BL6NJ_P0060417 Hnf4g protein_coding protein_coding MGP_C57BL6NJ_T0060418.1 MGP_C57BL6NJ_G0027461.1 mouse_genomes_project 3 761360 787252 + MGP_C57BL6NJ_P0060418 Hnf4g protein_coding protein_coding MGP_C57BL6NJ_T0007950.1 MGP_C57BL6NJ_G0006499.1 mouse_genomes_project 3 160262769 160267895 + Gm42949 lincRNA lincRNA MGP_C57BL6NJ_T0001243.1 MGP_C57BL6NJ_G0001146.1 mouse_genomes_project 3 8288753 8290540 + TEC TEC MGP_C57BL6NJ_T0064033.1 MGP_C57BL6NJ_G0028266.1 mouse_genomes_project 3 130310174 130373817 + MGP_C57BL6NJ_P0064033 Prss12 protein_coding protein_coding MGP_C57BL6NJ_T0064276.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140423351 140492214 - MGP_C57BL6NJ_P0064276 Npnt protein_coding protein_coding MGP_C57BL6NJ_T0064277.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140423368 140491966 - MGP_C57BL6NJ_P0064277 Npnt protein_coding protein_coding MGP_C57BL6NJ_T0064278.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140424289 140492083 - MGP_C57BL6NJ_P0064278 Npnt protein_coding protein_coding MGP_C57BL6NJ_T0064279.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140426036 140491966 - MGP_C57BL6NJ_P0064279 Npnt protein_coding protein_coding MGP_C57BL6NJ_T0064280.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140426036 140491966 - MGP_C57BL6NJ_P0064280 Npnt protein_coding protein_coding MGP_C57BL6NJ_T0064281.1 MGP_C57BL6NJ_G0028308.1 mouse_genomes_project 3 140432782 140447944 - Npnt protein_coding retained_intron MGP_C57BL6NJ_T0014465.1 MGP_C57BL6NJ_G0012510.1 mouse_genomes_project 3 74173840 74174345 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001295.1 MGP_C57BL6NJ_G0001198.1 mouse_genomes_project 3 40621123 40624779 + TEC TEC MGP_C57BL6NJ_T0001426.1 MGP_C57BL6NJ_G0001327.1 mouse_genomes_project 3 123238748 123242721 - TEC TEC MGP_C57BL6NJ_T0014300.1 MGP_C57BL6NJ_G0012345.1 mouse_genomes_project 3 24983937 24985904 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063190.1 MGP_C57BL6NJ_G0028082.1 mouse_genomes_project 3 105296062 105336739 - Fam46c protein_coding processed_transcript MGP_C57BL6NJ_T0063191.1 MGP_C57BL6NJ_G0028082.1 mouse_genomes_project 3 105296065 105336735 - Fam46c protein_coding processed_transcript MGP_C57BL6NJ_T0063192.1 MGP_C57BL6NJ_G0028082.1 mouse_genomes_project 3 105313625 105336865 - MGP_C57BL6NJ_P0063192 Fam46c protein_coding protein_coding MGP_C57BL6NJ_T0061838.1 MGP_C57BL6NJ_G0027769.1 mouse_genomes_project 3 89075532 89093232 - MGP_C57BL6NJ_P0061838 Glt28d2 protein_coding protein_coding MGP_C57BL6NJ_T0100301.1 MGP_C57BL6NJ_G0038347.1 mouse_genomes_project 3 114154592 114154715 + Gm23336 snRNA snRNA MGP_C57BL6NJ_T0004568.1 MGP_C57BL6NJ_G0003978.1 mouse_genomes_project 3 167379699 167396069 + 1810013D15Rik antisense antisense MGP_C57BL6NJ_T0004569.1 MGP_C57BL6NJ_G0003978.1 mouse_genomes_project 3 167379748 167383485 + 1810013D15Rik antisense antisense MGP_C57BL6NJ_T0004570.1 MGP_C57BL6NJ_G0003978.1 mouse_genomes_project 3 167382044 167397293 + 1810013D15Rik antisense antisense MGP_C57BL6NJ_T0101552.1 MGP_C57BL6NJ_G0039598.1 mouse_genomes_project 3 1752728 1752861 - Gm22944 snoRNA snoRNA MGP_C57BL6NJ_T0014313.1 MGP_C57BL6NJ_G0012358.1 mouse_genomes_project 3 32371874 32372106 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004389.1 MGP_C57BL6NJ_G0003855.1 mouse_genomes_project 3 52499464 52508595 + Gm20089 antisense antisense MGP_C57BL6NJ_T0060793.1 MGP_C57BL6NJ_G0027550.1 mouse_genomes_project 3 30196771 30215504 + MGP_C57BL6NJ_P0060793 Cldn11 protein_coding protein_coding MGP_C57BL6NJ_T0014353.1 MGP_C57BL6NJ_G0012398.1 mouse_genomes_project 3 43624904 43625433 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064414.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145810847 145820561 + MGP_C57BL6NJ_P0064414 Lamtor3 protein_coding protein_coding MGP_C57BL6NJ_T0064415.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145810867 145811856 + Lamtor3 protein_coding retained_intron MGP_C57BL6NJ_T0064416.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145810867 145823789 + MGP_C57BL6NJ_P0064416 Lamtor3 protein_coding protein_coding MGP_C57BL6NJ_T0064417.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145810903 145822820 + Lamtor3 protein_coding processed_transcript MGP_C57BL6NJ_T0064418.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145810913 145819156 + MGP_C57BL6NJ_P0064418 Lamtor3 protein_coding protein_coding MGP_C57BL6NJ_T0064419.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145811185 145819441 + Lamtor3 protein_coding retained_intron MGP_C57BL6NJ_T0064420.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145817131 145820497 + Lamtor3 protein_coding retained_intron MGP_C57BL6NJ_T0064421.1 MGP_C57BL6NJ_G0028332.1 mouse_genomes_project 3 145818516 145823924 + Lamtor3 protein_coding retained_intron MGP_C57BL6NJ_T0014525.1 MGP_C57BL6NJ_G0012570.1 mouse_genomes_project 3 97365007 97365462 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100239.1 MGP_C57BL6NJ_G0038285.1 mouse_genomes_project 3 15974314 15974441 - Gm23441 snRNA snRNA MGP_C57BL6NJ_T0103088.1 MGP_C57BL6NJ_G0040882.1 mouse_genomes_project 3 94610675 94612558 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0064410.1 MGP_C57BL6NJ_G0028331.1 mouse_genomes_project 3 145758612 145808899 + MGP_C57BL6NJ_P0064410 Dnajb14 protein_coding protein_coding MGP_C57BL6NJ_T0064411.1 MGP_C57BL6NJ_G0028331.1 mouse_genomes_project 3 145758824 145787140 + Dnajb14 protein_coding retained_intron MGP_C57BL6NJ_T0064412.1 MGP_C57BL6NJ_G0028331.1 mouse_genomes_project 3 145759103 145793354 + MGP_C57BL6NJ_P0064412 Dnajb14 protein_coding protein_coding MGP_C57BL6NJ_T0064413.1 MGP_C57BL6NJ_G0028331.1 mouse_genomes_project 3 145796326 145800040 + Dnajb14 protein_coding retained_intron MGP_C57BL6NJ_T0001318.1 MGP_C57BL6NJ_G0001221.1 mouse_genomes_project 3 51902158 51902269 + TEC TEC MGP_C57BL6NJ_T0014299.1 MGP_C57BL6NJ_G0012344.1 mouse_genomes_project 3 23701363 23701543 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014605.1 MGP_C57BL6NJ_G0012650.1 mouse_genomes_project 3 118518262 118518655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001269.1 MGP_C57BL6NJ_G0001172.1 mouse_genomes_project 3 32199002 32201829 - TEC TEC MGP_C57BL6NJ_T0014648.1 MGP_C57BL6NJ_G0012693.1 mouse_genomes_project 3 133346248 133347494 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001371.1 MGP_C57BL6NJ_G0001272.1 mouse_genomes_project 3 70899718 70902701 - TEC TEC MGP_C57BL6NJ_T0062945.1 MGP_C57BL6NJ_G0028015.1 mouse_genomes_project 3 100187739 100196214 - MGP_C57BL6NJ_P0062945 protein_coding protein_coding MGP_C57BL6NJ_T0064402.1 MGP_C57BL6NJ_G0028328.1 mouse_genomes_project 3 145433282 145435860 - protein_coding lincRNA MGP_C57BL6NJ_T0060529.1 MGP_C57BL6NJ_G0027496.1 mouse_genomes_project 3 12837469 12848064 + MGP_C57BL6NJ_P0060529 Car2 protein_coding protein_coding MGP_C57BL6NJ_T0060530.1 MGP_C57BL6NJ_G0027496.1 mouse_genomes_project 3 12837624 12853700 + MGP_C57BL6NJ_P0060530 Car2 protein_coding protein_coding MGP_C57BL6NJ_T0060531.1 MGP_C57BL6NJ_G0027496.1 mouse_genomes_project 3 12837835 12839763 + Car2 protein_coding retained_intron MGP_C57BL6NJ_T0099087.1 MGP_C57BL6NJ_G0037151.1 mouse_genomes_project 3 1507202 1507321 + n-R5s194 rRNA rRNA MGP_C57BL6NJ_T0018481.1 MGP_C57BL6NJ_G0015919.1 mouse_genomes_project 3 143597991 143606239 - 4933401H06Rik processed_transcript macro_lncRNA MGP_C57BL6NJ_T0018482.1 MGP_C57BL6NJ_G0015919.1 mouse_genomes_project 3 143598094 143606239 - 4933401H06Rik processed_transcript antisense MGP_C57BL6NJ_T0010764.1 MGP_C57BL6NJ_G0008849.1 mouse_genomes_project 3 92813323 92813406 - Mir92b miRNA miRNA MGP_C57BL6NJ_T0004362.1 MGP_C57BL6NJ_G0003836.1 mouse_genomes_project 3 29803980 29804975 - 4933429H19Rik antisense antisense MGP_C57BL6NJ_T0004363.1 MGP_C57BL6NJ_G0003836.1 mouse_genomes_project 3 29804548 29804971 - 4933429H19Rik antisense antisense MGP_C57BL6NJ_T0014614.1 MGP_C57BL6NJ_G0012659.1 mouse_genomes_project 3 121327941 121328362 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063602.1 MGP_C57BL6NJ_G0028179.1 mouse_genomes_project 3 113663573 113667841 - MGP_C57BL6NJ_P0063602 Gstm4 protein_coding protein_coding MGP_C57BL6NJ_T0102245.1 MGP_C57BL6NJ_G0040237.1 mouse_genomes_project 3 131204054 131204484 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014483.1 MGP_C57BL6NJ_G0012528.1 mouse_genomes_project 3 81528832 81529499 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014235.1 MGP_C57BL6NJ_G0012280.1 mouse_genomes_project 3 4079178 4079524 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100274.1 MGP_C57BL6NJ_G0038320.1 mouse_genomes_project 3 89616379 89616548 + Gm23850 snRNA snRNA MGP_C57BL6NJ_T0007795.1 MGP_C57BL6NJ_G0006373.1 mouse_genomes_project 3 98573387 98576912 - 1700040D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007932.1 MGP_C57BL6NJ_G0006489.1 mouse_genomes_project 3 155995561 156007065 + Gm36831 lincRNA lincRNA MGP_C57BL6NJ_T0014348.1 MGP_C57BL6NJ_G0012393.1 mouse_genomes_project 3 41653093 41656631 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004433.1 MGP_C57BL6NJ_G0003889.1 mouse_genomes_project 3 92989556 92997199 + Gm15417 antisense antisense MGP_C57BL6NJ_T0004434.1 MGP_C57BL6NJ_G0003889.1 mouse_genomes_project 3 92989676 92997199 + Gm15417 antisense antisense MGP_C57BL6NJ_T0004435.1 MGP_C57BL6NJ_G0003889.1 mouse_genomes_project 3 92991898 92997651 + Gm15417 antisense antisense MGP_C57BL6NJ_T0004436.1 MGP_C57BL6NJ_G0003889.1 mouse_genomes_project 3 92993599 92997121 + Gm15417 antisense antisense MGP_C57BL6NJ_T0062578.1 MGP_C57BL6NJ_G0027921.1 mouse_genomes_project 3 96562326 96565160 - MGP_C57BL6NJ_P0062578 Ivl protein_coding protein_coding MGP_C57BL6NJ_T0014351.1 MGP_C57BL6NJ_G0012396.1 mouse_genomes_project 3 43023496 43023936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064496.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676258 150054134 + MGP_C57BL6NJ_P0064496 Unc5c protein_coding protein_coding MGP_C57BL6NJ_T0064497.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676616 150048681 + MGP_C57BL6NJ_P0064497 Unc5c protein_coding protein_coding MGP_C57BL6NJ_T0064498.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676641 149880838 + Unc5c protein_coding processed_transcript MGP_C57BL6NJ_T0064499.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676641 149681971 + Unc5c protein_coding retained_intron MGP_C57BL6NJ_T0064500.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676641 149903036 + Unc5c protein_coding retained_intron MGP_C57BL6NJ_T0064501.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676641 150048633 + MGP_C57BL6NJ_P0064501 Unc5c protein_coding protein_coding MGP_C57BL6NJ_T0064502.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 149676713 150049750 + MGP_C57BL6NJ_P0064502 Unc5c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064503.1 MGP_C57BL6NJ_G0028351.1 mouse_genomes_project 3 150009062 150011197 + Unc5c protein_coding retained_intron MGP_C57BL6NJ_T0001462.1 MGP_C57BL6NJ_G0001363.1 mouse_genomes_project 3 134135075 134137568 - TEC TEC MGP_C57BL6NJ_T0007880.1 MGP_C57BL6NJ_G0006443.1 mouse_genomes_project 3 139959683 139961467 - Gm42880 lincRNA lincRNA MGP_C57BL6NJ_T0004379.1 MGP_C57BL6NJ_G0003846.1 mouse_genomes_project 3 36529967 36537795 - Gm12531 antisense antisense MGP_C57BL6NJ_T0004380.1 MGP_C57BL6NJ_G0003846.1 mouse_genomes_project 3 36529969 36537790 - Gm12531 antisense antisense MGP_C57BL6NJ_T0014275.1 MGP_C57BL6NJ_G0012320.1 mouse_genomes_project 3 15395261 15396600 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0063662.1 MGP_C57BL6NJ_G0028193.1 mouse_genomes_project 3 114081542 114101851 - MGP_C57BL6NJ_P0063662 Sars protein_coding protein_coding MGP_C57BL6NJ_T0063663.1 MGP_C57BL6NJ_G0028193.1 mouse_genomes_project 3 114083289 114101822 - MGP_C57BL6NJ_P0063663 Sars protein_coding protein_coding MGP_C57BL6NJ_T0063664.1 MGP_C57BL6NJ_G0028193.1 mouse_genomes_project 3 114084908 114101796 - MGP_C57BL6NJ_P0063664 Sars protein_coding protein_coding MGP_C57BL6NJ_T0063665.1 MGP_C57BL6NJ_G0028193.1 mouse_genomes_project 3 114086027 114101862 - MGP_C57BL6NJ_P0063665 Sars protein_coding protein_coding MGP_C57BL6NJ_T0063666.1 MGP_C57BL6NJ_G0028193.1 mouse_genomes_project 3 114091070 114101809 - Sars protein_coding retained_intron MGP_C57BL6NJ_T0007884.1 MGP_C57BL6NJ_G0006447.1 mouse_genomes_project 3 141358589 141365566 - lincRNA lincRNA MGP_C57BL6NJ_T0014248.1 MGP_C57BL6NJ_G0012293.1 mouse_genomes_project 3 7479055 7482003 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061698.1 MGP_C57BL6NJ_G0027735.1 mouse_genomes_project 3 82366206 82473320 - MGP_C57BL6NJ_P0061698 Rxfp1 protein_coding protein_coding MGP_C57BL6NJ_T0061699.1 MGP_C57BL6NJ_G0027735.1 mouse_genomes_project 3 82368707 82473406 - MGP_C57BL6NJ_P0061699 Rxfp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0061700.1 MGP_C57BL6NJ_G0027735.1 mouse_genomes_project 3 82377510 82379393 - Rxfp1 protein_coding retained_intron MGP_C57BL6NJ_T0061701.1 MGP_C57BL6NJ_G0027735.1 mouse_genomes_project 3 82381174 82393733 - Rxfp1 protein_coding processed_transcript MGP_C57BL6NJ_T0007716.1 MGP_C57BL6NJ_G0006317.1 mouse_genomes_project 3 53313261 53350717 + Gm2447 lincRNA lincRNA MGP_C57BL6NJ_T0007717.1 MGP_C57BL6NJ_G0006317.1 mouse_genomes_project 3 53338659 53350715 + Gm2447 lincRNA lincRNA MGP_C57BL6NJ_T0061276.1 MGP_C57BL6NJ_G0027635.1 mouse_genomes_project 3 55496583 55552808 + MGP_C57BL6NJ_P0061276 Smad9 protein_coding protein_coding MGP_C57BL6NJ_T0014399.1 MGP_C57BL6NJ_G0012444.1 mouse_genomes_project 3 58713018 58713514 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014407.1 MGP_C57BL6NJ_G0012452.1 mouse_genomes_project 3 60496443 60500708 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064238.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138610344 138738392 + MGP_C57BL6NJ_P0064238 Lef1 protein_coding protein_coding MGP_C57BL6NJ_T0064239.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138610344 138738392 + MGP_C57BL6NJ_P0064239 Lef1 protein_coding protein_coding MGP_C57BL6NJ_T0064240.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138610344 138738392 + MGP_C57BL6NJ_P0064240 Lef1 protein_coding protein_coding MGP_C57BL6NJ_T0064241.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138612676 138617267 + Lef1 protein_coding retained_intron MGP_C57BL6NJ_T0064242.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138612676 138738392 + MGP_C57BL6NJ_P0064242 Lef1 protein_coding protein_coding MGP_C57BL6NJ_T0064243.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138612685 138698584 + Lef1 protein_coding retained_intron MGP_C57BL6NJ_T0064244.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138613693 138695246 + Lef1 protein_coding retained_intron MGP_C57BL6NJ_T0064245.1 MGP_C57BL6NJ_G0028299.1 mouse_genomes_project 3 138613735 138716354 + Lef1 protein_coding processed_transcript MGP_C57BL6NJ_T0010779.1 MGP_C57BL6NJ_G0008864.1 mouse_genomes_project 3 114754948 114755062 + Gm44384 miRNA miRNA MGP_C57BL6NJ_T0001453.1 MGP_C57BL6NJ_G0001354.1 mouse_genomes_project 3 133730961 133733839 + TEC TEC MGP_C57BL6NJ_T0062647.1 MGP_C57BL6NJ_G0027967.1 mouse_genomes_project 3 98562661 98568632 + MGP_C57BL6NJ_P0062647 Lingo4 protein_coding protein_coding MGP_C57BL6NJ_T0064570.1 MGP_C57BL6NJ_G0028363.1 mouse_genomes_project 3 152829963 152976629 - MGP_C57BL6NJ_P0064570 Hs2st1 protein_coding protein_coding MGP_C57BL6NJ_T0064571.1 MGP_C57BL6NJ_G0028363.1 mouse_genomes_project 3 152854220 152976329 - MGP_C57BL6NJ_P0064571 Hs2st1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064572.1 MGP_C57BL6NJ_G0028363.1 mouse_genomes_project 3 152974285 152976606 - Hs2st1 protein_coding retained_intron MGP_C57BL6NJ_T0014266.1 MGP_C57BL6NJ_G0012311.1 mouse_genomes_project 3 12340484 12358923 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0064062.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133701459 133793900 + Camk2d protein_coding processed_transcript MGP_C57BL6NJ_T0064063.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702108 133961059 + MGP_C57BL6NJ_P0064063 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064064.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702117 133961057 + MGP_C57BL6NJ_P0064064 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064065.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702155 133961061 + MGP_C57BL6NJ_P0064065 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064066.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702162 133935005 + MGP_C57BL6NJ_P0064066 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064067.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702164 133962472 + MGP_C57BL6NJ_P0064067 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064068.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702166 133880325 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064069.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702167 133956608 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064070.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702167 133924395 + MGP_C57BL6NJ_P0064070 Camk2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064071.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702177 133958856 + MGP_C57BL6NJ_P0064071 Camk2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064072.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702192 133959976 + Camk2d protein_coding processed_transcript MGP_C57BL6NJ_T0064073.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702254 133959849 + MGP_C57BL6NJ_P0064073 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064074.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702363 133962441 + MGP_C57BL6NJ_P0064074 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064075.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702465 133959364 + MGP_C57BL6NJ_P0064075 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064076.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702498 133794604 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064077.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702556 133959830 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064078.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133702571 133960473 + MGP_C57BL6NJ_P0064078 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064079.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133889344 133897290 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064080.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133889917 133923166 + Camk2d protein_coding processed_transcript MGP_C57BL6NJ_T0064081.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133896531 133921003 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064082.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133907865 133956407 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064083.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133910742 133960159 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064084.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133914234 133957694 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064085.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133914234 133957694 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064086.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133915457 133959320 + MGP_C57BL6NJ_P0064086 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064087.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133917043 133919412 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0064088.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133918379 133959039 + MGP_C57BL6NJ_P0064088 Camk2d protein_coding protein_coding MGP_C57BL6NJ_T0064089.1 MGP_C57BL6NJ_G0028274.1 mouse_genomes_project 3 133919679 133922767 + Camk2d protein_coding retained_intron MGP_C57BL6NJ_T0007664.1 MGP_C57BL6NJ_G0006280.1 mouse_genomes_project 3 33685446 33693171 - Gm20515 lincRNA lincRNA MGP_C57BL6NJ_T0007904.1 MGP_C57BL6NJ_G0006465.1 mouse_genomes_project 3 149106962 149108334 + 4930590L14Rik lincRNA lincRNA MGP_C57BL6NJ_T0061202.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53554451 53590683 - MGP_C57BL6NJ_P0061202 Cog6 protein_coding protein_coding MGP_C57BL6NJ_T0061203.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53554698 53568131 - Cog6 protein_coding retained_intron MGP_C57BL6NJ_T0061204.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53557303 53590662 - MGP_C57BL6NJ_P0061204 Cog6 protein_coding protein_coding MGP_C57BL6NJ_T0061205.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53566089 53590664 - MGP_C57BL6NJ_P0061205 Cog6 protein_coding protein_coding MGP_C57BL6NJ_T0061206.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53569245 53590656 - Cog6 protein_coding retained_intron MGP_C57BL6NJ_T0061207.1 MGP_C57BL6NJ_G0027621.1 mouse_genomes_project 3 53583802 53590658 - Cog6 protein_coding retained_intron MGP_C57BL6NJ_T0014412.1 MGP_C57BL6NJ_G0012457.1 mouse_genomes_project 3 61462760 61463496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099559.1 MGP_C57BL6NJ_G0037606.1 mouse_genomes_project 3 163844603 163868066 + Gm38139 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0007847.1 MGP_C57BL6NJ_G0006419.1 mouse_genomes_project 3 124353415 124357782 + 4921521D15Rik lincRNA lincRNA MGP_C57BL6NJ_T0061956.1 MGP_C57BL6NJ_G0027796.1 mouse_genomes_project 3 91345615 91347929 + Nes protein_coding retained_intron MGP_C57BL6NJ_T0061957.1 MGP_C57BL6NJ_G0027796.1 mouse_genomes_project 3 91345630 91355253 + MGP_C57BL6NJ_P0061957 Nes protein_coding protein_coding MGP_C57BL6NJ_T0061958.1 MGP_C57BL6NJ_G0027796.1 mouse_genomes_project 3 91345666 91355253 + MGP_C57BL6NJ_P0061958 Nes protein_coding protein_coding MGP_C57BL6NJ_T0014359.1 MGP_C57BL6NJ_G0012404.1 mouse_genomes_project 3 45806748 45807007 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014317.1 MGP_C57BL6NJ_G0012362.1 mouse_genomes_project 3 33430467 33431353 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0062788.1 MGP_C57BL6NJ_G0027990.1 mouse_genomes_project 3 99394389 99401718 + MGP_C57BL6NJ_P0062788 protein_coding protein_coding MGP_C57BL6NJ_T0060419.1 MGP_C57BL6NJ_G0027462.1 mouse_genomes_project 3 1357837 1359946 + MGP_C57BL6NJ_P0060419 protein_coding protein_coding MGP_C57BL6NJ_T0014508.1 MGP_C57BL6NJ_G0012553.1 mouse_genomes_project 3 92684105 92684358 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014282.1 MGP_C57BL6NJ_G0012327.1 mouse_genomes_project 3 16980947 16981236 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0061571.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70440506 70448410 + MGP_C57BL6NJ_P0061571 Il12a protein_coding protein_coding MGP_C57BL6NJ_T0061572.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70441286 70448406 + MGP_C57BL6NJ_P0061572 Il12a protein_coding protein_coding MGP_C57BL6NJ_T0061573.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70441389 70447954 + Il12a protein_coding retained_intron MGP_C57BL6NJ_T0061574.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70443855 70447886 + Il12a protein_coding retained_intron MGP_C57BL6NJ_T0061575.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70443883 70448408 + Il12a protein_coding retained_intron MGP_C57BL6NJ_T0061576.1 MGP_C57BL6NJ_G0027706.1 mouse_genomes_project 3 70443883 70448410 + Il12a protein_coding retained_intron MGP_C57BL6NJ_T0063022.1 MGP_C57BL6NJ_G0028038.1 mouse_genomes_project 3 101008362 101012042 + MGP_C57BL6NJ_P0063022 Gm16253 protein_coding protein_coding MGP_C57BL6NJ_T0060471.1 MGP_C57BL6NJ_G0027478.1 mouse_genomes_project 3 7782542 7799959 - MGP_C57BL6NJ_P0060471 Gm37389 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007724.1 MGP_C57BL6NJ_G0006324.1 mouse_genomes_project 3 58498128 58513135 - Gm26671 lincRNA lincRNA MGP_C57BL6NJ_T0007725.1 MGP_C57BL6NJ_G0006324.1 mouse_genomes_project 3 58508322 58513196 - Gm26671 lincRNA lincRNA MGP_C57BL6NJ_T0007726.1 MGP_C57BL6NJ_G0006324.1 mouse_genomes_project 3 58508676 58513166 - Gm26671 lincRNA lincRNA MGP_C57BL6NJ_T0007727.1 MGP_C57BL6NJ_G0006324.1 mouse_genomes_project 3 58510241 58513202 - Gm26671 lincRNA lincRNA MGP_C57BL6NJ_T0061847.1 MGP_C57BL6NJ_G0027772.1 mouse_genomes_project 3 89357634 89362426 - MGP_C57BL6NJ_P0061847 Rps3a1 protein_coding protein_coding MGP_C57BL6NJ_T0007658.1 MGP_C57BL6NJ_G0006275.1 mouse_genomes_project 3 32909850 32973101 - lincRNA lincRNA MGP_C57BL6NJ_T0061921.1 MGP_C57BL6NJ_G0027787.1 mouse_genomes_project 3 91128465 91145384 - MGP_C57BL6NJ_P0061921 Ntrk1 protein_coding protein_coding MGP_C57BL6NJ_T0061579.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70650672 70776267 - Ift80 protein_coding retained_intron MGP_C57BL6NJ_T0061580.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70650672 70776251 - MGP_C57BL6NJ_P0061580 Ift80 protein_coding protein_coding MGP_C57BL6NJ_T0061581.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70650698 70776278 - MGP_C57BL6NJ_P0061581 Ift80 protein_coding protein_coding MGP_C57BL6NJ_T0061582.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70650698 70766360 - MGP_C57BL6NJ_P0061582 Ift80 protein_coding protein_coding MGP_C57BL6NJ_T0061583.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70651818 70688517 - Ift80 protein_coding retained_intron MGP_C57BL6NJ_T0061584.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70683191 70683541 - Ift80 protein_coding retained_intron MGP_C57BL6NJ_T0061585.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70685870 70776206 - Ift80 protein_coding retained_intron MGP_C57BL6NJ_T0061586.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70710735 70744152 - Ift80 protein_coding processed_transcript MGP_C57BL6NJ_T0061587.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70734067 70776185 - MGP_C57BL6NJ_P0061587 Ift80 protein_coding protein_coding MGP_C57BL6NJ_T0061588.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70738325 70776192 - MGP_C57BL6NJ_P0061588 Ift80 protein_coding protein_coding MGP_C57BL6NJ_T0061589.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70743710 70776096 - Ift80 protein_coding processed_transcript MGP_C57BL6NJ_T0061590.1 MGP_C57BL6NJ_G0027709.1 mouse_genomes_project 3 70774002 70776233 - Ift80 protein_coding retained_intron MGP_C57BL6NJ_T0061402.1 MGP_C57BL6NJ_G0027665.1 mouse_genomes_project 3 60233615 60244925 - MGP_C57BL6NJ_P0061402 P2ry12 protein_coding protein_coding MGP_C57BL6NJ_T0061403.1 MGP_C57BL6NJ_G0027665.1 mouse_genomes_project 3 60233702 60281764 - MGP_C57BL6NJ_P0061403 P2ry12 protein_coding protein_coding MGP_C57BL6NJ_T0061404.1 MGP_C57BL6NJ_G0027665.1 mouse_genomes_project 3 60233703 60237603 - MGP_C57BL6NJ_P0061404 P2ry12 protein_coding protein_coding MGP_C57BL6NJ_T0061405.1 MGP_C57BL6NJ_G0027665.1 mouse_genomes_project 3 60233704 60281804 - MGP_C57BL6NJ_P0061405 P2ry12 protein_coding protein_coding MGP_C57BL6NJ_T0061406.1 MGP_C57BL6NJ_G0027665.1 mouse_genomes_project 3 60235248 60237544 - MGP_C57BL6NJ_P0061406 P2ry12 protein_coding protein_coding MGP_C57BL6NJ_T0010748.1 MGP_C57BL6NJ_G0008833.1 mouse_genomes_project 3 40158639 40158713 + Gm23810 miRNA miRNA MGP_C57BL6NJ_T0007907.1 MGP_C57BL6NJ_G0006468.1 mouse_genomes_project 3 151407437 151458682 + Gm43614 lincRNA lincRNA MGP_C57BL6NJ_T0001369.1 MGP_C57BL6NJ_G0001270.1 mouse_genomes_project 3 69123006 69124847 + TEC TEC MGP_C57BL6NJ_T0060620.1 MGP_C57BL6NJ_G0027518.1 mouse_genomes_project 3 18540284 18570282 - MGP_C57BL6NJ_P0060620 Cpa3 protein_coding protein_coding MGP_C57BL6NJ_T0060621.1 MGP_C57BL6NJ_G0027518.1 mouse_genomes_project 3 18553513 18568848 - Cpa3 protein_coding processed_transcript MGP_C57BL6NJ_T0010732.1 MGP_C57BL6NJ_G0008817.1 mouse_genomes_project 3 662856 662948 + Gm23237 miRNA miRNA MGP_C57BL6NJ_T0061997.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705685 91732197 + MGP_C57BL6NJ_P0061997 Cct3 protein_coding protein_coding MGP_C57BL6NJ_T0061998.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705686 91707517 + Cct3 protein_coding retained_intron MGP_C57BL6NJ_T0061999.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705692 91731937 + Cct3 protein_coding retained_intron MGP_C57BL6NJ_T0062000.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705695 91722977 + Cct3 protein_coding retained_intron MGP_C57BL6NJ_T0062001.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705722 91731937 + Cct3 protein_coding retained_intron MGP_C57BL6NJ_T0062002.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705743 91732196 + MGP_C57BL6NJ_P0062002 Cct3 protein_coding protein_coding MGP_C57BL6NJ_T0062003.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91705757 91731937 + MGP_C57BL6NJ_P0062003 Cct3 protein_coding protein_coding MGP_C57BL6NJ_T0062004.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91711407 91731080 + MGP_C57BL6NJ_P0062004 Cct3 protein_coding protein_coding MGP_C57BL6NJ_T0062005.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91731424 91732194 + Cct3 protein_coding retained_intron MGP_C57BL6NJ_T0062006.1 MGP_C57BL6NJ_G0027807.1 mouse_genomes_project 3 91731477 91732195 + MGP_C57BL6NJ_P0062006 Cct3 protein_coding protein_coding MGP_C57BL6NJ_T0061840.1 MGP_C57BL6NJ_G0027771.1 mouse_genomes_project 3 89206546 89215228 - MGP_C57BL6NJ_P0061840 Prss48 protein_coding protein_coding MGP_C57BL6NJ_T0004460.1 MGP_C57BL6NJ_G0003905.1 mouse_genomes_project 3 101297912 101300183 - 4930442L01Rik antisense antisense MGP_C57BL6NJ_T0004472.1 MGP_C57BL6NJ_G0003914.1 mouse_genomes_project 3 107867835 107870399 - antisense antisense MGP_C57BL6NJ_T0007655.1 MGP_C57BL6NJ_G0006272.1 mouse_genomes_project 3 28703213 28840210 - Gm33206 lincRNA lincRNA MGP_C57BL6NJ_T0103108.1 MGP_C57BL6NJ_G0040902.1 mouse_genomes_project 3 103280786 103290651 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014314.1 MGP_C57BL6NJ_G0012359.1 mouse_genomes_project 3 32888063 32888421 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001478.1 MGP_C57BL6NJ_G0001378.1 mouse_genomes_project 3 136734216 136735318 + TEC TEC MGP_C57BL6NJ_T0099398.1 MGP_C57BL6NJ_G0037455.1 mouse_genomes_project 3 106357060 106358132 + Gm42938 sense_intronic sense_intronic MGP_C57BL6NJ_T0008052.1 MGP_C57BL6NJ_G0006584.1 mouse_genomes_project 4 84871888 84910559 + Gm5860 lincRNA lincRNA MGP_C57BL6NJ_T0008053.1 MGP_C57BL6NJ_G0006584.1 mouse_genomes_project 4 84872330 84874195 + Gm5860 lincRNA lincRNA MGP_C57BL6NJ_T0008054.1 MGP_C57BL6NJ_G0006584.1 mouse_genomes_project 4 84872414 84910491 + Gm5860 lincRNA lincRNA MGP_C57BL6NJ_T0098869.1 MGP_C57BL6NJ_G0036933.1 mouse_genomes_project 4 35997220 35997558 - pseudogene pseudogene MGP_C57BL6NJ_T0099443.1 MGP_C57BL6NJ_G0037500.1 mouse_genomes_project 4 30878272 30892328 + Bach2it1 sense_intronic sense_intronic MGP_C57BL6NJ_T0018537.1 MGP_C57BL6NJ_G0015955.1 mouse_genomes_project 4 107889281 107901510 - Gm12720 processed_transcript processed_transcript MGP_C57BL6NJ_T0015094.1 MGP_C57BL6NJ_G0013139.1 mouse_genomes_project 4 122358423 122359301 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015225.1 MGP_C57BL6NJ_G0013270.1 mouse_genomes_project 4 164143611 164144083 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069365.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147216204 147341625 + MGP_C57BL6NJ_P0069365 Ubr4 protein_coding protein_coding MGP_C57BL6NJ_T0069367.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147248933 147366336 + MGP_C57BL6NJ_P0069367 Ubr4 protein_coding protein_coding MGP_C57BL6NJ_T0069368.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147248933 147366394 + MGP_C57BL6NJ_P0069368 Ubr4 protein_coding protein_coding MGP_C57BL6NJ_T0069369.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147248943 147265915 + Ubr4 protein_coding processed_transcript MGP_C57BL6NJ_T0069370.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147284328 147323838 + MGP_C57BL6NJ_P0069370 Ubr4 protein_coding protein_coding MGP_C57BL6NJ_T0069371.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147286070 147286885 + Ubr4 protein_coding retained_intron MGP_C57BL6NJ_T0069372.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147306874 147310007 + MGP_C57BL6NJ_P0069372 Ubr4 protein_coding protein_coding MGP_C57BL6NJ_T0069373.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147335120 147335837 + Ubr4 protein_coding retained_intron MGP_C57BL6NJ_T0069374.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147348914 147354740 + Ubr4 protein_coding retained_intron MGP_C57BL6NJ_T0069375.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147352873 147356530 + Ubr4 protein_coding processed_transcript MGP_C57BL6NJ_T0069376.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147353056 147354983 + Ubr4 protein_coding retained_intron MGP_C57BL6NJ_T0069377.1 MGP_C57BL6NJ_G0029442.1 mouse_genomes_project 4 147354309 147356612 + Ubr4 protein_coding retained_intron MGP_C57BL6NJ_T0100389.1 MGP_C57BL6NJ_G0038435.1 mouse_genomes_project 4 126997531 126997695 - Gm23540 snRNA snRNA MGP_C57BL6NJ_T0014841.1 MGP_C57BL6NJ_G0012886.1 mouse_genomes_project 4 31562532 31563142 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103131.1 MGP_C57BL6NJ_G0040925.1 mouse_genomes_project 4 42445348 42446715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066891.1 MGP_C57BL6NJ_G0028895.1 mouse_genomes_project 4 102774462 102779828 - MGP_C57BL6NJ_P0066891 I0C0044D17Rik protein_coding protein_coding MGP_C57BL6NJ_T0066892.1 MGP_C57BL6NJ_G0028895.1 mouse_genomes_project 4 102775802 102776312 - MGP_C57BL6NJ_P0066892 I0C0044D17Rik protein_coding protein_coding MGP_C57BL6NJ_T0018575.1 MGP_C57BL6NJ_G0015975.1 mouse_genomes_project 4 162161343 162164895 - Gm16334 processed_transcript processed_transcript MGP_C57BL6NJ_T0070037.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162051096 162057831 + Rpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0070038.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162051207 162057835 + MGP_C57BL6NJ_P0070038 Rpl22 protein_coding protein_coding MGP_C57BL6NJ_T0070039.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162051221 162059426 + MGP_C57BL6NJ_P0070039 Rpl22 protein_coding protein_coding MGP_C57BL6NJ_T0070040.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162051223 162059425 + MGP_C57BL6NJ_P0070040 Rpl22 protein_coding protein_coding MGP_C57BL6NJ_T0070041.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162052421 162055401 + Rpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0070042.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162052480 162055630 + Rpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0070043.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162052834 162057828 + Rpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0070044.1 MGP_C57BL6NJ_G0029610.1 mouse_genomes_project 4 162052911 162057829 + Rpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0068126.1 MGP_C57BL6NJ_G0029165.1 mouse_genomes_project 4 130005582 130010608 - MGP_C57BL6NJ_P0068126 Ndufs5 protein_coding protein_coding MGP_C57BL6NJ_T0068127.1 MGP_C57BL6NJ_G0029165.1 mouse_genomes_project 4 130005582 130012580 - MGP_C57BL6NJ_P0068127 Ndufs5 protein_coding protein_coding MGP_C57BL6NJ_T0068128.1 MGP_C57BL6NJ_G0029165.1 mouse_genomes_project 4 130005582 130012564 - MGP_C57BL6NJ_P0068128 Ndufs5 protein_coding protein_coding MGP_C57BL6NJ_T0068129.1 MGP_C57BL6NJ_G0029165.1 mouse_genomes_project 4 130005741 130012559 - MGP_C57BL6NJ_P0068129 Ndufs5 protein_coding protein_coding MGP_C57BL6NJ_T0069672.1 MGP_C57BL6NJ_G0029542.1 mouse_genomes_project 4 157193575 157194993 + MGP_C57BL6NJ_P0069672 Nppb protein_coding protein_coding MGP_C57BL6NJ_T0014944.1 MGP_C57BL6NJ_G0012989.1 mouse_genomes_project 4 68091567 68092042 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065645.1 MGP_C57BL6NJ_G0028597.1 mouse_genomes_project 4 41991303 41991892 + MGP_C57BL6NJ_P0065645 protein_coding protein_coding MGP_C57BL6NJ_T0068399.1 MGP_C57BL6NJ_G0029234.1 mouse_genomes_project 4 135802673 135812973 + Ak2 protein_coding processed_transcript MGP_C57BL6NJ_T0068400.1 MGP_C57BL6NJ_G0029234.1 mouse_genomes_project 4 135803939 135822215 + MGP_C57BL6NJ_P0068400 Ak2 protein_coding protein_coding MGP_C57BL6NJ_T0068401.1 MGP_C57BL6NJ_G0029234.1 mouse_genomes_project 4 135803939 135819107 + MGP_C57BL6NJ_P0068401 Ak2 protein_coding protein_coding MGP_C57BL6NJ_T0068402.1 MGP_C57BL6NJ_G0029234.1 mouse_genomes_project 4 135804068 135818935 + MGP_C57BL6NJ_P0068402 Ak2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065119.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8108785 8131459 - MGP_C57BL6NJ_P0065119 Ndufaf6 protein_coding protein_coding MGP_C57BL6NJ_T0065120.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8108790 8114799 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0065121.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8108953 8131404 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0065122.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8114788 8131404 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0065123.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8117767 8131438 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0065124.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8125508 8131460 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0065125.1 MGP_C57BL6NJ_G0028459.1 mouse_genomes_project 4 8128246 8131443 - Ndufaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0101703.1 MGP_C57BL6NJ_G0039749.1 mouse_genomes_project 4 133413508 133413638 - Gm24161 snoRNA snoRNA MGP_C57BL6NJ_T0015057.1 MGP_C57BL6NJ_G0013102.1 mouse_genomes_project 4 110744765 110745033 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100364.1 MGP_C57BL6NJ_G0038410.1 mouse_genomes_project 4 97228349 97228456 + Gm24796 snRNA snRNA MGP_C57BL6NJ_T0014916.1 MGP_C57BL6NJ_G0012961.1 mouse_genomes_project 4 55193503 55194024 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067860.1 MGP_C57BL6NJ_G0029091.1 mouse_genomes_project 4 124054407 124058859 - MGP_C57BL6NJ_P0067860 Cdc20 protein_coding protein_coding MGP_C57BL6NJ_T0067861.1 MGP_C57BL6NJ_G0029091.1 mouse_genomes_project 4 124054611 124058085 - MGP_C57BL6NJ_P0067861 Cdc20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067862.1 MGP_C57BL6NJ_G0029091.1 mouse_genomes_project 4 124055054 124057328 - Cdc20 protein_coding retained_intron MGP_C57BL6NJ_T0068445.1 MGP_C57BL6NJ_G0029241.1 mouse_genomes_project 4 136049108 136083084 - MGP_C57BL6NJ_P0068445 C77080 protein_coding protein_coding MGP_C57BL6NJ_T0068446.1 MGP_C57BL6NJ_G0029241.1 mouse_genomes_project 4 136049108 136057442 - MGP_C57BL6NJ_P0068446 C77080 protein_coding protein_coding MGP_C57BL6NJ_T0068447.1 MGP_C57BL6NJ_G0029241.1 mouse_genomes_project 4 136049113 136074051 - MGP_C57BL6NJ_P0068447 C77080 protein_coding protein_coding MGP_C57BL6NJ_T0068448.1 MGP_C57BL6NJ_G0029241.1 mouse_genomes_project 4 136054890 136099592 - MGP_C57BL6NJ_P0068448 C77080 protein_coding protein_coding MGP_C57BL6NJ_T0066189.1 MGP_C57BL6NJ_G0028715.1 mouse_genomes_project 4 53433829 53442169 - MGP_C57BL6NJ_P0066189 Olfr272 protein_coding protein_coding MGP_C57BL6NJ_T0066190.1 MGP_C57BL6NJ_G0028715.1 mouse_genomes_project 4 53433829 53434791 - MGP_C57BL6NJ_P0066190 Olfr272 protein_coding protein_coding MGP_C57BL6NJ_T0070104.1 MGP_C57BL6NJ_G0029620.1 mouse_genomes_project 4 163926635 163944003 - MGP_C57BL6NJ_P0070104 Ccdc27 protein_coding protein_coding MGP_C57BL6NJ_T0015204.1 MGP_C57BL6NJ_G0013249.1 mouse_genomes_project 4 155789754 155790390 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067121.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111453499 111580777 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067122.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111454268 111599402 + MGP_C57BL6NJ_P0067122 Ssbp3 protein_coding protein_coding MGP_C57BL6NJ_T0067123.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111454309 111588450 + MGP_C57BL6NJ_P0067123 Ssbp3 protein_coding protein_coding MGP_C57BL6NJ_T0067124.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111454331 111598275 + MGP_C57BL6NJ_P0067124 Ssbp3 protein_coding protein_coding MGP_C57BL6NJ_T0067125.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111454465 111598206 + MGP_C57BL6NJ_P0067125 Ssbp3 protein_coding protein_coding MGP_C57BL6NJ_T0067126.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111454659 111560229 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067127.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111455096 111598223 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067128.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111465973 111580729 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067129.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111466013 111587956 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067130.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111489463 111598251 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067131.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111505633 111598400 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067132.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111516058 111580775 + MGP_C57BL6NJ_P0067132 Ssbp3 protein_coding protein_coding MGP_C57BL6NJ_T0067133.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111577886 111587071 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067134.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111580539 111581193 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067135.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111587909 111598227 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067136.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111587940 111590365 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067137.1 MGP_C57BL6NJ_G0028950.1 mouse_genomes_project 4 111596661 111598158 + Ssbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0067474.1 MGP_C57BL6NJ_G0029011.1 mouse_genomes_project 4 117804027 118330092 - MGP_C57BL6NJ_P0067474 Skint6 protein_coding protein_coding MGP_C57BL6NJ_T0067475.1 MGP_C57BL6NJ_G0029011.1 mouse_genomes_project 4 117804074 118326733 - MGP_C57BL6NJ_P0067475 Skint6 protein_coding protein_coding MGP_C57BL6NJ_T0015205.1 MGP_C57BL6NJ_G0013250.1 mouse_genomes_project 4 155789757 155790528 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065008.1 MGP_C57BL6NJ_G0028437.1 mouse_genomes_project 4 467429 471761 - MGP_C57BL6NJ_P0065008 Rps20 protein_coding protein_coding MGP_C57BL6NJ_T0065009.1 MGP_C57BL6NJ_G0028437.1 mouse_genomes_project 4 470565 471329 - Rps20 protein_coding retained_intron MGP_C57BL6NJ_T0065010.1 MGP_C57BL6NJ_G0028437.1 mouse_genomes_project 4 470568 471584 - Rps20 protein_coding retained_intron MGP_C57BL6NJ_T0068829.1 MGP_C57BL6NJ_G0029316.1 mouse_genomes_project 4 140403355 140452708 - MGP_C57BL6NJ_P0068829 Wdtc1 protein_coding protein_coding MGP_C57BL6NJ_T0068830.1 MGP_C57BL6NJ_G0029316.1 mouse_genomes_project 4 140419709 140471670 - Wdtc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068831.1 MGP_C57BL6NJ_G0029316.1 mouse_genomes_project 4 140424094 140434502 - Wdtc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068832.1 MGP_C57BL6NJ_G0029316.1 mouse_genomes_project 4 140424716 140472081 - Wdtc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068626.1 MGP_C57BL6NJ_G0029276.1 mouse_genomes_project 4 137371497 137416791 + MGP_C57BL6NJ_P0068626 Nkain1 protein_coding protein_coding MGP_C57BL6NJ_T0068627.1 MGP_C57BL6NJ_G0029276.1 mouse_genomes_project 4 137371704 137416807 + MGP_C57BL6NJ_P0068627 Nkain1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068628.1 MGP_C57BL6NJ_G0029276.1 mouse_genomes_project 4 137390426 137409338 + Nkain1 protein_coding processed_transcript MGP_C57BL6NJ_T0015111.1 MGP_C57BL6NJ_G0013156.1 mouse_genomes_project 4 125304841 125305218 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011847.1 MGP_C57BL6NJ_G0009932.1 mouse_genomes_project 4 140815639 140815895 + Gm22662 misc_RNA misc_RNA MGP_C57BL6NJ_T0067213.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112394765 112466987 + MGP_C57BL6NJ_P0067213 Lrp8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067214.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112394781 112465636 + MGP_C57BL6NJ_P0067214 Lrp8 protein_coding protein_coding MGP_C57BL6NJ_T0067215.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112394818 112466719 + MGP_C57BL6NJ_P0067215 Lrp8 protein_coding protein_coding MGP_C57BL6NJ_T0067216.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112394872 112465636 + MGP_C57BL6NJ_P0067216 Lrp8 protein_coding protein_coding MGP_C57BL6NJ_T0067217.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112394917 112465128 + MGP_C57BL6NJ_P0067217 Lrp8 protein_coding protein_coding MGP_C57BL6NJ_T0067218.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112395346 112444654 + Lrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0067219.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112395755 112465636 + Lrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0067220.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112416527 112465636 + Lrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0067221.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112424311 112430568 + Lrp8 protein_coding retained_intron MGP_C57BL6NJ_T0067222.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112424331 112469660 + MGP_C57BL6NJ_P0067222 Lrp8 protein_coding protein_coding MGP_C57BL6NJ_T0067223.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112439493 112441588 + Lrp8 protein_coding retained_intron MGP_C57BL6NJ_T0067224.1 MGP_C57BL6NJ_G0028964.1 mouse_genomes_project 4 112443419 112450156 + Lrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0099101.1 MGP_C57BL6NJ_G0037165.1 mouse_genomes_project 4 54443531 54443650 + n-R5s185 rRNA rRNA MGP_C57BL6NJ_T0015164.1 MGP_C57BL6NJ_G0013209.1 mouse_genomes_project 4 143288284 143288498 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066263.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57752900 57914665 - MGP_C57BL6NJ_P0066263 protein_coding protein_coding MGP_C57BL6NJ_T0066264.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57756606 57795637 - MGP_C57BL6NJ_P0066264 protein_coding protein_coding MGP_C57BL6NJ_T0066265.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57831428 57914665 - MGP_C57BL6NJ_P0066265 protein_coding protein_coding MGP_C57BL6NJ_T0066266.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57832732 57840261 - protein_coding processed_transcript MGP_C57BL6NJ_T0066267.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57843001 57873130 - protein_coding processed_transcript MGP_C57BL6NJ_T0066268.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57848576 57909554 - protein_coding processed_transcript MGP_C57BL6NJ_T0066269.1 MGP_C57BL6NJ_G0028736.1 mouse_genomes_project 4 57857707 57890530 - protein_coding processed_transcript MGP_C57BL6NJ_T0070175.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964367 164993465 - MGP_C57BL6NJ_P0070175 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070176.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964378 164977409 - Plch2 protein_coding retained_intron MGP_C57BL6NJ_T0070177.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964619 165001913 - MGP_C57BL6NJ_P0070177 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070178.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964619 164989488 - MGP_C57BL6NJ_P0070178 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070179.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964619 164971044 - MGP_C57BL6NJ_P0070179 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070180.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964625 164973869 - Plch2 protein_coding retained_intron MGP_C57BL6NJ_T0070181.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964629 164993465 - MGP_C57BL6NJ_P0070181 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070182.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164964914 165029163 - MGP_C57BL6NJ_P0070182 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070183.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164966951 165040762 - MGP_C57BL6NJ_P0070183 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070184.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164979392 164993465 - MGP_C57BL6NJ_P0070184 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070185.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164989551 165042862 - MGP_C57BL6NJ_P0070185 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0070186.1 MGP_C57BL6NJ_G0029635.1 mouse_genomes_project 4 164991557 165001909 - MGP_C57BL6NJ_P0070186 Plch2 protein_coding protein_coding MGP_C57BL6NJ_T0066470.1 MGP_C57BL6NJ_G0028791.1 mouse_genomes_project 4 64724645 64753049 + MGP_C57BL6NJ_P0066470 Tmem268 protein_coding protein_coding MGP_C57BL6NJ_T0066471.1 MGP_C57BL6NJ_G0028791.1 mouse_genomes_project 4 64724720 64728356 + Tmem268 protein_coding processed_transcript MGP_C57BL6NJ_T0066472.1 MGP_C57BL6NJ_G0028791.1 mouse_genomes_project 4 64726091 64735878 + MGP_C57BL6NJ_P0066472 Tmem268 protein_coding protein_coding MGP_C57BL6NJ_T0066473.1 MGP_C57BL6NJ_G0028791.1 mouse_genomes_project 4 64726091 64735909 + MGP_C57BL6NJ_P0066473 Tmem268 protein_coding protein_coding MGP_C57BL6NJ_T0066474.1 MGP_C57BL6NJ_G0028791.1 mouse_genomes_project 4 64726224 64753045 + MGP_C57BL6NJ_P0066474 Tmem268 protein_coding protein_coding MGP_C57BL6NJ_T0008175.1 MGP_C57BL6NJ_G0006669.1 mouse_genomes_project 4 144691001 144691875 - 1700037C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0015092.1 MGP_C57BL6NJ_G0013137.1 mouse_genomes_project 4 122313608 122313921 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004671.1 MGP_C57BL6NJ_G0004053.1 mouse_genomes_project 4 121993810 121996055 + antisense antisense MGP_C57BL6NJ_T0067574.1 MGP_C57BL6NJ_G0029039.1 mouse_genomes_project 4 121466388 121474421 - Uqcrh protein_coding processed_transcript MGP_C57BL6NJ_T0067575.1 MGP_C57BL6NJ_G0029039.1 mouse_genomes_project 4 121466388 121474458 - MGP_C57BL6NJ_P0067575 Uqcrh protein_coding protein_coding MGP_C57BL6NJ_T0067576.1 MGP_C57BL6NJ_G0029039.1 mouse_genomes_project 4 121466388 121474418 - MGP_C57BL6NJ_P0067576 Uqcrh protein_coding protein_coding MGP_C57BL6NJ_T0067577.1 MGP_C57BL6NJ_G0029039.1 mouse_genomes_project 4 121466389 121469631 - Uqcrh protein_coding retained_intron MGP_C57BL6NJ_T0067578.1 MGP_C57BL6NJ_G0029039.1 mouse_genomes_project 4 121469653 121474446 - Uqcrh protein_coding retained_intron MGP_C57BL6NJ_T0101686.1 MGP_C57BL6NJ_G0039732.1 mouse_genomes_project 4 97753301 97753430 + Gm23836 snoRNA snoRNA MGP_C57BL6NJ_T0068224.1 MGP_C57BL6NJ_G0029194.1 mouse_genomes_project 4 132628846 132630808 + MGP_C57BL6NJ_P0068224 Lsm10 protein_coding protein_coding MGP_C57BL6NJ_T0068225.1 MGP_C57BL6NJ_G0029194.1 mouse_genomes_project 4 132628876 132630805 + MGP_C57BL6NJ_P0068225 Lsm10 protein_coding protein_coding MGP_C57BL6NJ_T0068226.1 MGP_C57BL6NJ_G0029194.1 mouse_genomes_project 4 132628883 132630356 + MGP_C57BL6NJ_P0068226 Lsm10 protein_coding protein_coding MGP_C57BL6NJ_T0014870.1 MGP_C57BL6NJ_G0012915.1 mouse_genomes_project 4 39994085 39994532 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015148.1 MGP_C57BL6NJ_G0013193.1 mouse_genomes_project 4 139105033 139105505 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067608.1 MGP_C57BL6NJ_G0029045.1 mouse_genomes_project 4 121577795 121578714 + MGP_C57BL6NJ_P0067608 1700042G07Rik protein_coding protein_coding MGP_C57BL6NJ_T0068616.1 MGP_C57BL6NJ_G0029273.1 mouse_genomes_project 4 137260698 137267567 + MGP_C57BL6NJ_P0068616 Fabp3 protein_coding protein_coding MGP_C57BL6NJ_T0100380.1 MGP_C57BL6NJ_G0038426.1 mouse_genomes_project 4 120074922 120075055 - Gm23230 snRNA snRNA MGP_C57BL6NJ_T0065191.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9214373 9303563 - MGP_C57BL6NJ_P0065191 Fam92a protein_coding protein_coding MGP_C57BL6NJ_T0065192.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9214374 9303543 - MGP_C57BL6NJ_P0065192 Fam92a protein_coding protein_coding MGP_C57BL6NJ_T0065193.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9214507 9286624 - Fam92a protein_coding processed_transcript MGP_C57BL6NJ_T0065195.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9281210 9302716 - MGP_C57BL6NJ_P0065195 Fam92a protein_coding protein_coding MGP_C57BL6NJ_T0065196.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9295668 9303419 - MGP_C57BL6NJ_P0065196 Fam92a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065197.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9296890 9303543 - Fam92a protein_coding retained_intron MGP_C57BL6NJ_T0065198.1 MGP_C57BL6NJ_G0028475.1 mouse_genomes_project 4 9297157 9303282 - Fam92a protein_coding retained_intron MGP_C57BL6NJ_T0015021.1 MGP_C57BL6NJ_G0013066.1 mouse_genomes_project 4 98053715 98054302 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067484.1 MGP_C57BL6NJ_G0029015.1 mouse_genomes_project 4 120046901 120085990 + MGP_C57BL6NJ_P0067484 Gm12830 protein_coding protein_coding MGP_C57BL6NJ_T0015046.1 MGP_C57BL6NJ_G0013091.1 mouse_genomes_project 4 107425451 107425667 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001560.1 MGP_C57BL6NJ_G0001460.1 mouse_genomes_project 4 148287302 148289949 - TEC TEC MGP_C57BL6NJ_T0068385.1 MGP_C57BL6NJ_G0029230.1 mouse_genomes_project 4 135539835 135554782 + MGP_C57BL6NJ_P0068385 A3galt2 protein_coding protein_coding MGP_C57BL6NJ_T0068386.1 MGP_C57BL6NJ_G0029230.1 mouse_genomes_project 4 135543729 135555492 + MGP_C57BL6NJ_P0068386 A3galt2 protein_coding protein_coding MGP_C57BL6NJ_T0008183.1 MGP_C57BL6NJ_G0006677.1 mouse_genomes_project 4 147855509 147874243 - 4933427I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008184.1 MGP_C57BL6NJ_G0006677.1 mouse_genomes_project 4 147856081 147863961 - 4933427I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0066601.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86069243 86187879 - MGP_C57BL6NJ_P0066601 Ttc39b protein_coding protein_coding MGP_C57BL6NJ_T0066602.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86075367 86082119 - Ttc39b protein_coding retained_intron MGP_C57BL6NJ_T0066603.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86088718 86187863 - MGP_C57BL6NJ_P0066603 Ttc39b protein_coding protein_coding MGP_C57BL6NJ_T0066604.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86096415 86118788 - Ttc39b protein_coding processed_transcript MGP_C57BL6NJ_T0066605.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86103807 86139236 - MGP_C57BL6NJ_P0066605 Ttc39b protein_coding protein_coding MGP_C57BL6NJ_T0066606.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86110080 86187813 - MGP_C57BL6NJ_P0066606 Ttc39b protein_coding protein_coding MGP_C57BL6NJ_T0066607.1 MGP_C57BL6NJ_G0028822.1 mouse_genomes_project 4 86110211 86133677 - MGP_C57BL6NJ_P0066607 Ttc39b protein_coding protein_coding MGP_C57BL6NJ_T0010834.1 MGP_C57BL6NJ_G0008919.1 mouse_genomes_project 4 48314494 48314591 - Mir1958 miRNA miRNA MGP_C57BL6NJ_T0004716.1 MGP_C57BL6NJ_G0004090.1 mouse_genomes_project 4 143433130 143433546 - Gm24362 antisense antisense MGP_C57BL6NJ_T0065637.1 MGP_C57BL6NJ_G0028591.1 mouse_genomes_project 4 41565263 41566480 - MGP_C57BL6NJ_P0065637 protein_coding protein_coding MGP_C57BL6NJ_T0014885.1 MGP_C57BL6NJ_G0012930.1 mouse_genomes_project 4 46376286 46376609 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008189.1 MGP_C57BL6NJ_G0006682.1 mouse_genomes_project 4 148679869 148684420 + Gm13025 lincRNA lincRNA MGP_C57BL6NJ_T0010890.1 MGP_C57BL6NJ_G0008975.1 mouse_genomes_project 4 148695415 148695511 + Gm23045 miRNA miRNA MGP_C57BL6NJ_T0014897.1 MGP_C57BL6NJ_G0012942.1 mouse_genomes_project 4 51581039 51582901 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008080.1 MGP_C57BL6NJ_G0006607.1 mouse_genomes_project 4 105426819 105457368 - Gm12796 lincRNA lincRNA MGP_C57BL6NJ_T0069616.1 MGP_C57BL6NJ_G0029521.1 mouse_genomes_project 4 152909182 152923078 + MGP_C57BL6NJ_P0069616 9430007A20Rik protein_coding protein_coding MGP_C57BL6NJ_T0014927.1 MGP_C57BL6NJ_G0012972.1 mouse_genomes_project 4 57116654 57117433 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066756.1 MGP_C57BL6NJ_G0028863.1 mouse_genomes_project 4 93009116 93023356 + Dmrta1 protein_coding processed_transcript MGP_C57BL6NJ_T0066757.1 MGP_C57BL6NJ_G0028863.1 mouse_genomes_project 4 93019650 93026209 + MGP_C57BL6NJ_P0066757 Dmrta1 protein_coding protein_coding MGP_C57BL6NJ_T0066753.1 MGP_C57BL6NJ_G0028861.1 mouse_genomes_project 4 92597505 92607177 - MGP_C57BL6NJ_P0066753 Cdkn2a protein_coding protein_coding MGP_C57BL6NJ_T0066754.1 MGP_C57BL6NJ_G0028861.1 mouse_genomes_project 4 92597575 92621052 - MGP_C57BL6NJ_P0066754 Cdkn2a protein_coding protein_coding MGP_C57BL6NJ_T0014904.1 MGP_C57BL6NJ_G0012949.1 mouse_genomes_project 4 52660960 52661580 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065663.1 MGP_C57BL6NJ_G0028606.1 mouse_genomes_project 4 42444691 42449554 - MGP_C57BL6NJ_P0065663 protein_coding protein_coding MGP_C57BL6NJ_T0014734.1 MGP_C57BL6NJ_G0012779.1 mouse_genomes_project 4 642755 643255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066488.1 MGP_C57BL6NJ_G0028799.1 mouse_genomes_project 4 66914372 66925906 + MGP_C57BL6NJ_P0066488 Trim32 protein_coding protein_coding MGP_C57BL6NJ_T0066489.1 MGP_C57BL6NJ_G0028799.1 mouse_genomes_project 4 66914372 66925906 + MGP_C57BL6NJ_P0066489 Trim32 protein_coding protein_coding MGP_C57BL6NJ_T0066490.1 MGP_C57BL6NJ_G0028799.1 mouse_genomes_project 4 66914635 66923246 + MGP_C57BL6NJ_P0066490 Trim32 protein_coding protein_coding MGP_C57BL6NJ_T0066491.1 MGP_C57BL6NJ_G0028799.1 mouse_genomes_project 4 66914635 66923386 + MGP_C57BL6NJ_P0066491 Trim32 protein_coding protein_coding MGP_C57BL6NJ_T0004745.1 MGP_C57BL6NJ_G0004112.1 mouse_genomes_project 4 157218169 157221093 - Gm13054 antisense antisense MGP_C57BL6NJ_T0015096.1 MGP_C57BL6NJ_G0013141.1 mouse_genomes_project 4 122515041 122515681 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070148.1 MGP_C57BL6NJ_G0029629.1 mouse_genomes_project 4 164809246 164830614 + MGP_C57BL6NJ_P0070148 protein_coding protein_coding MGP_C57BL6NJ_T0070149.1 MGP_C57BL6NJ_G0029629.1 mouse_genomes_project 4 164825366 164826452 + protein_coding processed_transcript MGP_C57BL6NJ_T0067612.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121727194 121900760 - MGP_C57BL6NJ_P0067612 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067613.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121727195 121901192 - MGP_C57BL6NJ_P0067613 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067614.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121727195 121901192 - MGP_C57BL6NJ_P0067614 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067615.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121727247 121900924 - MGP_C57BL6NJ_P0067615 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067616.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121728440 121729638 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067617.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121730012 121731234 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067618.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121730044 121731081 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067619.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121732723 121736509 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067620.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121733285 121738193 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067621.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121738152 121748199 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067622.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121740281 121751070 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067623.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121742866 121837084 - MGP_C57BL6NJ_P0067623 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067624.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121748019 121837100 - MGP_C57BL6NJ_P0067624 Mast2 protein_coding protein_coding MGP_C57BL6NJ_T0067625.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121753317 121837905 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0067626.1 MGP_C57BL6NJ_G0029047.1 mouse_genomes_project 4 121753606 121870735 - Mast2 protein_coding processed_transcript MGP_C57BL6NJ_T0008017.1 MGP_C57BL6NJ_G0006555.1 mouse_genomes_project 4 52365388 52446460 - C630028M04Rik lincRNA lincRNA MGP_C57BL6NJ_T0069686.1 MGP_C57BL6NJ_G0029546.1 mouse_genomes_project 4 157301482 157313061 - MGP_C57BL6NJ_P0069686 Agtrap protein_coding protein_coding MGP_C57BL6NJ_T0069687.1 MGP_C57BL6NJ_G0029546.1 mouse_genomes_project 4 157304938 157309467 - Agtrap protein_coding processed_transcript MGP_C57BL6NJ_T0069688.1 MGP_C57BL6NJ_G0029546.1 mouse_genomes_project 4 157308336 157313061 - Agtrap protein_coding retained_intron MGP_C57BL6NJ_T0068181.1 MGP_C57BL6NJ_G0029182.1 mouse_genomes_project 4 131303225 131310541 + MGP_C57BL6NJ_P0068181 protein_coding protein_coding MGP_C57BL6NJ_T0068182.1 MGP_C57BL6NJ_G0029182.1 mouse_genomes_project 4 131309409 131349625 + MGP_C57BL6NJ_P0068182 protein_coding protein_coding MGP_C57BL6NJ_T0068183.1 MGP_C57BL6NJ_G0029182.1 mouse_genomes_project 4 131324385 131329747 + protein_coding processed_transcript MGP_C57BL6NJ_T0069714.1 MGP_C57BL6NJ_G0029551.1 mouse_genomes_project 4 157390702 157396869 + MGP_C57BL6NJ_P0069714 Fbxo2 protein_coding protein_coding MGP_C57BL6NJ_T0014896.1 MGP_C57BL6NJ_G0012941.1 mouse_genomes_project 4 50293326 50293821 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018488.1 MGP_C57BL6NJ_G0015924.1 mouse_genomes_project 4 804189 846574 + A830012C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0065873.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43364064 43380922 + protein_coding processed_transcript MGP_C57BL6NJ_T0065874.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43364128 43384872 + MGP_C57BL6NJ_P0065874 protein_coding protein_coding MGP_C57BL6NJ_T0065875.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43364362 43380125 + MGP_C57BL6NJ_P0065875 protein_coding protein_coding MGP_C57BL6NJ_T0065876.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43364423 43375821 + protein_coding processed_transcript MGP_C57BL6NJ_T0065877.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43368968 43380714 + protein_coding processed_transcript MGP_C57BL6NJ_T0065878.1 MGP_C57BL6NJ_G0028638.1 mouse_genomes_project 4 43384199 43385006 + protein_coding processed_transcript MGP_C57BL6NJ_T0010827.1 MGP_C57BL6NJ_G0008912.1 mouse_genomes_project 4 40189259 40189342 - Gm25931 miRNA miRNA MGP_C57BL6NJ_T0015157.1 MGP_C57BL6NJ_G0013202.1 mouse_genomes_project 4 141789720 141790473 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014998.1 MGP_C57BL6NJ_G0013043.1 mouse_genomes_project 4 89472609 89472938 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069203.1 MGP_C57BL6NJ_G0029408.1 mouse_genomes_project 4 145221223 145223675 - MGP_C57BL6NJ_P0069203 Ldlrad2 protein_coding protein_coding MGP_C57BL6NJ_T0008192.1 MGP_C57BL6NJ_G0006685.1 mouse_genomes_project 4 149429958 149432998 + Gm13074 lincRNA lincRNA MGP_C57BL6NJ_T0098876.1 MGP_C57BL6NJ_G0036940.1 mouse_genomes_project 4 149635745 149637449 + pseudogene pseudogene MGP_C57BL6NJ_T0066562.1 MGP_C57BL6NJ_G0028816.1 mouse_genomes_project 4 83623094 83676359 + MGP_C57BL6NJ_P0066562 Lurap1l protein_coding protein_coding MGP_C57BL6NJ_T0008013.1 MGP_C57BL6NJ_G0006551.1 mouse_genomes_project 4 45611562 45612815 + Gm12410 lincRNA lincRNA MGP_C57BL6NJ_T0068636.1 MGP_C57BL6NJ_G0029278.1 mouse_genomes_project 4 137627893 137664449 + MGP_C57BL6NJ_P0068636 Sdc3 protein_coding protein_coding MGP_C57BL6NJ_T0068637.1 MGP_C57BL6NJ_G0029278.1 mouse_genomes_project 4 137628060 137655403 + Sdc3 protein_coding retained_intron MGP_C57BL6NJ_T0068638.1 MGP_C57BL6NJ_G0029278.1 mouse_genomes_project 4 137650014 137657189 + MGP_C57BL6NJ_P0068638 Sdc3 protein_coding protein_coding MGP_C57BL6NJ_T0068639.1 MGP_C57BL6NJ_G0029278.1 mouse_genomes_project 4 137652433 137657189 + MGP_C57BL6NJ_P0068639 Sdc3 protein_coding protein_coding MGP_C57BL6NJ_T0068640.1 MGP_C57BL6NJ_G0029278.1 mouse_genomes_project 4 137654974 137660380 + Sdc3 protein_coding retained_intron MGP_C57BL6NJ_T0018584.1 MGP_C57BL6NJ_G0015980.1 mouse_genomes_project 4 166114047 166121135 - Gm13648 processed_transcript processed_transcript MGP_C57BL6NJ_T0068437.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136014537 136049138 + MGP_C57BL6NJ_P0068437 Yars protein_coding protein_coding MGP_C57BL6NJ_T0068438.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136014679 136022219 + Yars protein_coding retained_intron MGP_C57BL6NJ_T0068439.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136021892 136040123 + MGP_C57BL6NJ_P0068439 Yars protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068440.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136022011 136036138 + Yars protein_coding processed_transcript MGP_C57BL6NJ_T0068441.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136037087 136040397 + Yars protein_coding retained_intron MGP_C57BL6NJ_T0068442.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136041777 136045257 + Yars protein_coding retained_intron MGP_C57BL6NJ_T0068443.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136042229 136048194 + Yars protein_coding processed_transcript MGP_C57BL6NJ_T0068444.1 MGP_C57BL6NJ_G0029240.1 mouse_genomes_project 4 136043288 136044465 + Yars protein_coding retained_intron MGP_C57BL6NJ_T0004709.1 MGP_C57BL6NJ_G0004084.1 mouse_genomes_project 4 140612522 140615693 - Gm13257 antisense antisense MGP_C57BL6NJ_T0069524.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149743505 149791535 - MGP_C57BL6NJ_P0069524 Plekhm2 protein_coding protein_coding MGP_C57BL6NJ_T0069525.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149743505 149792316 - MGP_C57BL6NJ_P0069525 Plekhm2 protein_coding protein_coding MGP_C57BL6NJ_T0069526.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149746103 149747308 - Plekhm2 protein_coding retained_intron MGP_C57BL6NJ_T0069527.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149748218 149748819 - Plekhm2 protein_coding retained_intron MGP_C57BL6NJ_T0069528.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149750238 149759932 - Plekhm2 protein_coding retained_intron MGP_C57BL6NJ_T0069529.1 MGP_C57BL6NJ_G0029478.1 mouse_genomes_project 4 149759053 149760499 - Plekhm2 protein_coding retained_intron MGP_C57BL6NJ_T0100377.1 MGP_C57BL6NJ_G0038423.1 mouse_genomes_project 4 113205877 113205984 - Gm22345 snRNA snRNA MGP_C57BL6NJ_T0068241.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132702738 132744641 - MGP_C57BL6NJ_P0068241 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068242.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132704358 132714637 - MGP_C57BL6NJ_P0068242 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068243.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132704372 132706294 - Thrap3 protein_coding processed_transcript MGP_C57BL6NJ_T0068244.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132705865 132712564 - MGP_C57BL6NJ_P0068244 Thrap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068245.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132711879 132744470 - MGP_C57BL6NJ_P0068245 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068246.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132714454 132718157 - MGP_C57BL6NJ_P0068246 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068247.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132718404 132744493 - Thrap3 protein_coding retained_intron MGP_C57BL6NJ_T0068248.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132718418 132719778 - Thrap3 protein_coding processed_transcript MGP_C57BL6NJ_T0068249.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132720193 132734355 - MGP_C57BL6NJ_P0068249 Thrap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068250.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132720528 132742955 - MGP_C57BL6NJ_P0068250 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068251.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132720537 132744470 - MGP_C57BL6NJ_P0068251 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068252.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132725802 132744504 - Thrap3 protein_coding retained_intron MGP_C57BL6NJ_T0068253.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132725983 132744540 - Thrap3 protein_coding retained_intron MGP_C57BL6NJ_T0068254.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132726221 132744528 - MGP_C57BL6NJ_P0068254 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068255.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132726227 132744257 - MGP_C57BL6NJ_P0068255 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068256.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132726233 132744271 - MGP_C57BL6NJ_P0068256 Thrap3 protein_coding protein_coding MGP_C57BL6NJ_T0068257.1 MGP_C57BL6NJ_G0029198.1 mouse_genomes_project 4 132733879 132744551 - Thrap3 protein_coding processed_transcript MGP_C57BL6NJ_T0067053.1 MGP_C57BL6NJ_G0028930.1 mouse_genomes_project 4 107643359 107701707 + MGP_C57BL6NJ_P0067053 Oma1 protein_coding protein_coding MGP_C57BL6NJ_T0067054.1 MGP_C57BL6NJ_G0028930.1 mouse_genomes_project 4 107656337 107662093 + Oma1 protein_coding processed_transcript MGP_C57BL6NJ_T0067055.1 MGP_C57BL6NJ_G0028930.1 mouse_genomes_project 4 107662111 107707123 + Oma1 protein_coding processed_transcript MGP_C57BL6NJ_T0015135.1 MGP_C57BL6NJ_G0013180.1 mouse_genomes_project 4 133098939 133099358 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008107.1 MGP_C57BL6NJ_G0006626.1 mouse_genomes_project 4 121580669 121582154 + Gm12951 lincRNA lincRNA MGP_C57BL6NJ_T0008102.1 MGP_C57BL6NJ_G0006621.1 mouse_genomes_project 4 112563022 112569812 + 4930407G08Rik lincRNA lincRNA MGP_C57BL6NJ_T0008028.1 MGP_C57BL6NJ_G0006562.1 mouse_genomes_project 4 56238859 56277314 + Gm12511 lincRNA lincRNA MGP_C57BL6NJ_T0015132.1 MGP_C57BL6NJ_G0013177.1 mouse_genomes_project 4 130254973 130255295 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067395.1 MGP_C57BL6NJ_G0028996.1 mouse_genomes_project 4 114433111 114751247 + MGP_C57BL6NJ_P0067395 Faf1 protein_coding protein_coding MGP_C57BL6NJ_T0067396.1 MGP_C57BL6NJ_G0028996.1 mouse_genomes_project 4 114433520 114439859 + Faf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067397.1 MGP_C57BL6NJ_G0028996.1 mouse_genomes_project 4 114610072 114712256 + Faf1 protein_coding processed_transcript MGP_C57BL6NJ_T0068025.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126637776 126705824 - MGP_C57BL6NJ_P0068025 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068026.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126637776 126723616 - MGP_C57BL6NJ_P0068026 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068027.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126637776 126715804 - MGP_C57BL6NJ_P0068027 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068028.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126645909 126678241 - MGP_C57BL6NJ_P0068028 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068029.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126645911 126653130 - Nfyc protein_coding processed_transcript MGP_C57BL6NJ_T0068030.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126649379 126655914 - Nfyc protein_coding processed_transcript MGP_C57BL6NJ_T0068031.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126652953 126715782 - MGP_C57BL6NJ_P0068031 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068032.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126656575 126715794 - MGP_C57BL6NJ_P0068032 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0068033.1 MGP_C57BL6NJ_G0029138.1 mouse_genomes_project 4 126666944 126715805 - MGP_C57BL6NJ_P0068033 Nfyc protein_coding protein_coding MGP_C57BL6NJ_T0015104.1 MGP_C57BL6NJ_G0013149.1 mouse_genomes_project 4 124142296 124142888 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008201.1 MGP_C57BL6NJ_G0006694.1 mouse_genomes_project 4 159590022 159595364 - Gm13093 lincRNA lincRNA MGP_C57BL6NJ_T0069607.1 MGP_C57BL6NJ_G0029514.1 mouse_genomes_project 4 152497989 152502918 - MGP_C57BL6NJ_P0069607 protein_coding protein_coding MGP_C57BL6NJ_T0068299.1 MGP_C57BL6NJ_G0029209.1 mouse_genomes_project 4 133274129 133307574 + MGP_C57BL6NJ_P0068299 Psmb2 protein_coding protein_coding MGP_C57BL6NJ_T0068300.1 MGP_C57BL6NJ_G0029209.1 mouse_genomes_project 4 133274178 133283785 + Psmb2 protein_coding processed_transcript MGP_C57BL6NJ_T0068301.1 MGP_C57BL6NJ_G0029209.1 mouse_genomes_project 4 133274203 133305622 + Psmb2 protein_coding processed_transcript MGP_C57BL6NJ_T0067199.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111936736 111985232 + MGP_C57BL6NJ_P0067199 Ndc1 protein_coding protein_coding MGP_C57BL6NJ_T0067200.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111936832 111983219 + MGP_C57BL6NJ_P0067200 Ndc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067201.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111936867 111985209 + MGP_C57BL6NJ_P0067201 Ndc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067202.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111937004 111980036 + MGP_C57BL6NJ_P0067202 Ndc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067203.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111949639 111955147 + Ndc1 protein_coding processed_transcript MGP_C57BL6NJ_T0067204.1 MGP_C57BL6NJ_G0028961.1 mouse_genomes_project 4 111950016 111959793 + Ndc1 protein_coding retained_intron MGP_C57BL6NJ_T0010868.1 MGP_C57BL6NJ_G0008953.1 mouse_genomes_project 4 138925520 138925592 - Gm27445 miRNA miRNA MGP_C57BL6NJ_T0015134.1 MGP_C57BL6NJ_G0013179.1 mouse_genomes_project 4 131458071 131458395 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065383.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31464267 31627445 - MGP_C57BL6NJ_P0065383 Ankrd6 protein_coding protein_coding MGP_C57BL6NJ_T0065384.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31465972 31526179 - MGP_C57BL6NJ_P0065384 Ankrd6 protein_coding protein_coding MGP_C57BL6NJ_T0065385.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31466345 31529934 - MGP_C57BL6NJ_P0065385 Ankrd6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065386.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31481492 31483023 - Ankrd6 protein_coding processed_transcript MGP_C57BL6NJ_T0065387.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31484685 31593557 - Ankrd6 protein_coding processed_transcript MGP_C57BL6NJ_T0065388.1 MGP_C57BL6NJ_G0028525.1 mouse_genomes_project 4 31487354 31526420 - Ankrd6 protein_coding processed_transcript MGP_C57BL6NJ_T0015198.1 MGP_C57BL6NJ_G0013243.1 mouse_genomes_project 4 154071954 154072588 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001556.1 MGP_C57BL6NJ_G0001456.1 mouse_genomes_project 4 138807131 138811741 + TEC TEC MGP_C57BL6NJ_T0010809.1 MGP_C57BL6NJ_G0008894.1 mouse_genomes_project 4 7918082 7918189 + n-TSaga9 miRNA miRNA MGP_C57BL6NJ_T0011829.1 MGP_C57BL6NJ_G0009914.1 mouse_genomes_project 4 55099272 55099513 + Gm25687 misc_RNA misc_RNA MGP_C57BL6NJ_T0067114.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111257574 111321149 - MGP_C57BL6NJ_P0067114 Acot11 protein_coding protein_coding MGP_C57BL6NJ_T0067115.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111260254 111326301 - MGP_C57BL6NJ_P0067115 Acot11 protein_coding protein_coding MGP_C57BL6NJ_T0067116.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111260410 111287795 - MGP_C57BL6NJ_P0067116 Acot11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067117.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111266733 111268980 - Acot11 protein_coding processed_transcript MGP_C57BL6NJ_T0067118.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111274824 111321146 - MGP_C57BL6NJ_P0067118 Acot11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067119.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111276232 111321093 - MGP_C57BL6NJ_P0067119 Acot11 protein_coding protein_coding MGP_C57BL6NJ_T0067120.1 MGP_C57BL6NJ_G0028949.1 mouse_genomes_project 4 111276275 111321552 - MGP_C57BL6NJ_P0067120 Acot11 protein_coding protein_coding MGP_C57BL6NJ_T0066504.1 MGP_C57BL6NJ_G0028803.1 mouse_genomes_project 4 72058446 72174485 - MGP_C57BL6NJ_P0066504 Megf9 protein_coding protein_coding MGP_C57BL6NJ_T0066505.1 MGP_C57BL6NJ_G0028803.1 mouse_genomes_project 4 72058986 72174355 - MGP_C57BL6NJ_P0066505 Megf9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066506.1 MGP_C57BL6NJ_G0028803.1 mouse_genomes_project 4 72094297 72174552 - MGP_C57BL6NJ_P0066506 Megf9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018552.1 MGP_C57BL6NJ_G0015966.1 mouse_genomes_project 4 131152528 131170126 - Gm12915 processed_transcript processed_transcript MGP_C57BL6NJ_T0101687.1 MGP_C57BL6NJ_G0039733.1 mouse_genomes_project 4 98149404 98149505 + Gm22804 snoRNA snoRNA MGP_C57BL6NJ_T0101675.1 MGP_C57BL6NJ_G0039721.1 mouse_genomes_project 4 74957827 74957954 + Gm25769 snoRNA snoRNA MGP_C57BL6NJ_T0065882.1 MGP_C57BL6NJ_G0028641.1 mouse_genomes_project 4 43438968 43440420 + MGP_C57BL6NJ_P0065882 Hrct1 protein_coding protein_coding MGP_C57BL6NJ_T0067091.1 MGP_C57BL6NJ_G0028944.1 mouse_genomes_project 4 111130396 111149541 + MGP_C57BL6NJ_P0067091 Ttc22 protein_coding protein_coding MGP_C57BL6NJ_T0067092.1 MGP_C57BL6NJ_G0028944.1 mouse_genomes_project 4 111145328 111146980 + Ttc22 protein_coding processed_transcript MGP_C57BL6NJ_T0067514.1 MGP_C57BL6NJ_G0029025.1 mouse_genomes_project 4 120829969 120973942 + MGP_C57BL6NJ_P0067514 protein_coding protein_coding MGP_C57BL6NJ_T0067515.1 MGP_C57BL6NJ_G0029025.1 mouse_genomes_project 4 120829993 120973939 + MGP_C57BL6NJ_P0067515 protein_coding protein_coding MGP_C57BL6NJ_T0069200.1 MGP_C57BL6NJ_G0029407.1 mouse_genomes_project 4 145106534 145219771 + MGP_C57BL6NJ_P0069200 Hspg2 protein_coding protein_coding MGP_C57BL6NJ_T0069201.1 MGP_C57BL6NJ_G0029407.1 mouse_genomes_project 4 145106568 145219770 + MGP_C57BL6NJ_P0069201 Hspg2 protein_coding protein_coding MGP_C57BL6NJ_T0069202.1 MGP_C57BL6NJ_G0029407.1 mouse_genomes_project 4 145218311 145219258 + Hspg2 protein_coding processed_transcript MGP_C57BL6NJ_T0065830.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43246304 43251033 + MGP_C57BL6NJ_P0065830 Creb3 protein_coding protein_coding MGP_C57BL6NJ_T0065831.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43246785 43250770 + MGP_C57BL6NJ_P0065831 Creb3 protein_coding protein_coding MGP_C57BL6NJ_T0065832.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43246919 43249289 + MGP_C57BL6NJ_P0065832 Creb3 protein_coding protein_coding MGP_C57BL6NJ_T0065833.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43247239 43250500 + Creb3 protein_coding retained_intron MGP_C57BL6NJ_T0065834.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43247402 43249523 + Creb3 protein_coding retained_intron MGP_C57BL6NJ_T0065835.1 MGP_C57BL6NJ_G0028630.1 mouse_genomes_project 4 43249987 43250677 + Creb3 protein_coding retained_intron MGP_C57BL6NJ_T0100396.1 MGP_C57BL6NJ_G0038442.1 mouse_genomes_project 4 136816730 136816882 + Gm23845 snRNA snRNA MGP_C57BL6NJ_T0069286.1 MGP_C57BL6NJ_G0029419.1 mouse_genomes_project 4 146083637 146088863 - Cda protein_coding retained_intron MGP_C57BL6NJ_T0069287.1 MGP_C57BL6NJ_G0029419.1 mouse_genomes_project 4 146083741 146115047 - MGP_C57BL6NJ_P0069287 Cda protein_coding protein_coding MGP_C57BL6NJ_T0066919.1 MGP_C57BL6NJ_G0028899.1 mouse_genomes_project 4 103183747 103248241 + MGP_C57BL6NJ_P0066919 Atg4c protein_coding protein_coding MGP_C57BL6NJ_T0066920.1 MGP_C57BL6NJ_G0028899.1 mouse_genomes_project 4 103183960 103248237 + MGP_C57BL6NJ_P0066920 Atg4c protein_coding protein_coding MGP_C57BL6NJ_T0066921.1 MGP_C57BL6NJ_G0028899.1 mouse_genomes_project 4 103207706 103214168 + Atg4c protein_coding processed_transcript MGP_C57BL6NJ_T0067641.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122048256 122076741 - MGP_C57BL6NJ_P0067641 Nasp protein_coding protein_coding MGP_C57BL6NJ_T0067642.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122048813 122077185 - MGP_C57BL6NJ_P0067642 Nasp protein_coding protein_coding MGP_C57BL6NJ_T0067643.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122048813 122076722 - MGP_C57BL6NJ_P0067643 Nasp protein_coding protein_coding MGP_C57BL6NJ_T0067644.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122049930 122053453 - Nasp protein_coding processed_transcript MGP_C57BL6NJ_T0067645.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122049996 122052130 - Nasp protein_coding processed_transcript MGP_C57BL6NJ_T0067646.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122058671 122076737 - Nasp protein_coding processed_transcript MGP_C57BL6NJ_T0067647.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122064188 122073175 - Nasp protein_coding processed_transcript MGP_C57BL6NJ_T0067648.1 MGP_C57BL6NJ_G0029052.1 mouse_genomes_project 4 122065790 122076692 - Nasp protein_coding processed_transcript MGP_C57BL6NJ_T0004763.1 MGP_C57BL6NJ_G0004126.1 mouse_genomes_project 4 160406435 160437279 - 1700045H11Rik antisense antisense MGP_C57BL6NJ_T0065158.1 MGP_C57BL6NJ_G0028465.1 mouse_genomes_project 4 8557482 8630923 + MGP_C57BL6NJ_P0065158 1110037F02Rik protein_coding protein_coding MGP_C57BL6NJ_T0065159.1 MGP_C57BL6NJ_G0028465.1 mouse_genomes_project 4 8557482 8606246 + MGP_C57BL6NJ_P0065159 1110037F02Rik protein_coding protein_coding MGP_C57BL6NJ_T0065160.1 MGP_C57BL6NJ_G0028465.1 mouse_genomes_project 4 8557567 8630923 + MGP_C57BL6NJ_P0065160 1110037F02Rik protein_coding protein_coding MGP_C57BL6NJ_T0008182.1 MGP_C57BL6NJ_G0006676.1 mouse_genomes_project 4 147852747 147864057 + Gm13028 lincRNA lincRNA MGP_C57BL6NJ_T0065664.1 MGP_C57BL6NJ_G0028607.1 mouse_genomes_project 4 42444691 42446905 - MGP_C57BL6NJ_P0065664 protein_coding protein_coding MGP_C57BL6NJ_T0014997.1 MGP_C57BL6NJ_G0013042.1 mouse_genomes_project 4 88225067 88225374 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015116.1 MGP_C57BL6NJ_G0013161.1 mouse_genomes_project 4 127047568 127048947 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103145.1 MGP_C57BL6NJ_G0040939.1 mouse_genomes_project 4 91970859 91971367 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004730.1 MGP_C57BL6NJ_G0004102.1 mouse_genomes_project 4 149481764 149496818 + Gm13075 antisense antisense MGP_C57BL6NJ_T0004731.1 MGP_C57BL6NJ_G0004102.1 mouse_genomes_project 4 149481792 149497936 + Gm13075 antisense antisense MGP_C57BL6NJ_T0008179.1 MGP_C57BL6NJ_G0006673.1 mouse_genomes_project 4 145938828 145939304 + 2310026L22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007995.1 MGP_C57BL6NJ_G0006534.1 mouse_genomes_project 4 27461572 27481110 + Gm11917 lincRNA lincRNA MGP_C57BL6NJ_T0069307.1 MGP_C57BL6NJ_G0029427.1 mouse_genomes_project 4 146562440 146568783 + MGP_C57BL6NJ_P0069307 Pla2g2d protein_coding protein_coding MGP_C57BL6NJ_T0069308.1 MGP_C57BL6NJ_G0029427.1 mouse_genomes_project 4 146564599 146567831 + MGP_C57BL6NJ_P0069308 Pla2g2d protein_coding protein_coding MGP_C57BL6NJ_T0069927.1 MGP_C57BL6NJ_G0029591.1 mouse_genomes_project 4 160601476 160644419 - MGP_C57BL6NJ_P0069927 Per3 protein_coding protein_coding MGP_C57BL6NJ_T0069928.1 MGP_C57BL6NJ_G0029591.1 mouse_genomes_project 4 160601610 160615897 - Per3 protein_coding processed_transcript MGP_C57BL6NJ_T0069929.1 MGP_C57BL6NJ_G0029591.1 mouse_genomes_project 4 160611188 160631249 - Per3 protein_coding retained_intron MGP_C57BL6NJ_T0069930.1 MGP_C57BL6NJ_G0029591.1 mouse_genomes_project 4 160611188 160644419 - MGP_C57BL6NJ_P0069930 Per3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069931.1 MGP_C57BL6NJ_G0029591.1 mouse_genomes_project 4 160623941 160644419 - Per3 protein_coding retained_intron MGP_C57BL6NJ_T0066700.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90121703 90382582 - MGP_C57BL6NJ_P0066700 Slc24a2 protein_coding protein_coding MGP_C57BL6NJ_T0066701.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90121708 90380074 - MGP_C57BL6NJ_P0066701 Slc24a2 protein_coding protein_coding MGP_C57BL6NJ_T0066702.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90129752 90379984 - MGP_C57BL6NJ_P0066702 Slc24a2 protein_coding protein_coding MGP_C57BL6NJ_T0066703.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90129752 90379988 - MGP_C57BL6NJ_P0066703 Slc24a2 protein_coding protein_coding MGP_C57BL6NJ_T0066704.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90135379 90154819 - Slc24a2 protein_coding processed_transcript MGP_C57BL6NJ_T0066705.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90171431 90325140 - MGP_C57BL6NJ_P0066705 Slc24a2 protein_coding protein_coding MGP_C57BL6NJ_T0066706.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90217830 90382528 - Slc24a2 protein_coding processed_transcript MGP_C57BL6NJ_T0066707.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90218218 90382527 - Slc24a2 protein_coding processed_transcript MGP_C57BL6NJ_T0066708.1 MGP_C57BL6NJ_G0028837.1 mouse_genomes_project 4 90324639 90382572 - Slc24a2 protein_coding processed_transcript MGP_C57BL6NJ_T0010824.1 MGP_C57BL6NJ_G0008909.1 mouse_genomes_project 4 40046703 40046782 + Mir207 miRNA miRNA MGP_C57BL6NJ_T0014785.1 MGP_C57BL6NJ_G0012830.1 mouse_genomes_project 4 15762092 15762314 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018510.1 MGP_C57BL6NJ_G0015935.1 mouse_genomes_project 4 40931561 40936691 + Gm12404 processed_transcript processed_transcript MGP_C57BL6NJ_T0101710.1 MGP_C57BL6NJ_G0039756.1 mouse_genomes_project 4 139304329 139304466 + Snora16a snoRNA snoRNA MGP_C57BL6NJ_T0100340.1 MGP_C57BL6NJ_G0038386.1 mouse_genomes_project 4 38492245 38492409 - Gm25581 snRNA snRNA MGP_C57BL6NJ_T0069324.1 MGP_C57BL6NJ_G0029433.1 mouse_genomes_project 4 146801976 146822310 + MGP_C57BL6NJ_P0069324 Tmco4 protein_coding protein_coding MGP_C57BL6NJ_T0069325.1 MGP_C57BL6NJ_G0029433.1 mouse_genomes_project 4 146801980 146892042 + MGP_C57BL6NJ_P0069325 Tmco4 protein_coding protein_coding MGP_C57BL6NJ_T0069326.1 MGP_C57BL6NJ_G0029433.1 mouse_genomes_project 4 146801993 146892038 + MGP_C57BL6NJ_P0069326 Tmco4 protein_coding protein_coding MGP_C57BL6NJ_T0069327.1 MGP_C57BL6NJ_G0029433.1 mouse_genomes_project 4 146801997 146869246 + Tmco4 protein_coding processed_transcript MGP_C57BL6NJ_T0067992.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125533652 125676631 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067993.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125533652 125618559 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067994.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125533664 125536637 + MGP_C57BL6NJ_P0067994 Hivep3 protein_coding protein_coding MGP_C57BL6NJ_T0067995.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125533709 125675566 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067996.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125563528 125676011 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067997.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125618141 125805792 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067998.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125618165 125676631 + Hivep3 protein_coding processed_transcript MGP_C57BL6NJ_T0067999.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125618305 125953723 + MGP_C57BL6NJ_P0067999 Hivep3 protein_coding protein_coding MGP_C57BL6NJ_T0068000.1 MGP_C57BL6NJ_G0029129.1 mouse_genomes_project 4 125909202 125948455 + MGP_C57BL6NJ_P0068000 Hivep3 protein_coding protein_coding MGP_C57BL6NJ_T0069850.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159149332 159171998 - MGP_C57BL6NJ_P0069850 Tmem201 protein_coding protein_coding MGP_C57BL6NJ_T0069851.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159149340 159171998 - MGP_C57BL6NJ_P0069851 Tmem201 protein_coding protein_coding MGP_C57BL6NJ_T0069852.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159158823 159164641 - Tmem201 protein_coding retained_intron MGP_C57BL6NJ_T0069853.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159158823 159171998 - MGP_C57BL6NJ_P0069853 Tmem201 protein_coding protein_coding MGP_C57BL6NJ_T0069854.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159162749 159171952 - Tmem201 protein_coding retained_intron MGP_C57BL6NJ_T0069855.1 MGP_C57BL6NJ_G0029575.1 mouse_genomes_project 4 159165117 159171724 - Tmem201 protein_coding processed_transcript MGP_C57BL6NJ_T0103140.1 MGP_C57BL6NJ_G0040934.1 mouse_genomes_project 4 75814342 75815038 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103154.1 MGP_C57BL6NJ_G0040948.1 mouse_genomes_project 4 117546074 117575438 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010846.1 MGP_C57BL6NJ_G0008931.1 mouse_genomes_project 4 98342099 98342180 + Mir872 miRNA miRNA MGP_C57BL6NJ_T0008041.1 MGP_C57BL6NJ_G0006573.1 mouse_genomes_project 4 64763338 64770117 - lincRNA lincRNA MGP_C57BL6NJ_T0015041.1 MGP_C57BL6NJ_G0013086.1 mouse_genomes_project 4 104679346 104679803 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103186.1 MGP_C57BL6NJ_G0040980.1 mouse_genomes_project 4 154051602 156444203 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067925.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124986957 125003147 + MGP_C57BL6NJ_P0067925 P3h1 protein_coding protein_coding MGP_C57BL6NJ_T0067926.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124986981 125003150 + MGP_C57BL6NJ_P0067926 P3h1 protein_coding protein_coding MGP_C57BL6NJ_T0067927.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124986988 125002542 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067928.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124986988 125003147 + MGP_C57BL6NJ_P0067928 P3h1 protein_coding protein_coding MGP_C57BL6NJ_T0067929.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124986996 125002544 + MGP_C57BL6NJ_P0067929 P3h1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067930.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124987032 125002550 + MGP_C57BL6NJ_P0067930 P3h1 protein_coding protein_coding MGP_C57BL6NJ_T0067931.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124987842 124990975 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067932.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124989386 124995532 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067933.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124991984 124998186 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067934.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 124999056 125002308 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067935.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 125000813 125002547 + P3h1 protein_coding processed_transcript MGP_C57BL6NJ_T0067936.1 MGP_C57BL6NJ_G0029117.1 mouse_genomes_project 4 125001036 125002229 + P3h1 protein_coding retained_intron MGP_C57BL6NJ_T0015019.1 MGP_C57BL6NJ_G0013064.1 mouse_genomes_project 4 97226556 97226866 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008104.1 MGP_C57BL6NJ_G0006623.1 mouse_genomes_project 4 119891812 119892456 - Gm28864 lincRNA lincRNA MGP_C57BL6NJ_T0067056.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 107964104 108549524 + Dab1 protein_coding processed_transcript MGP_C57BL6NJ_T0067057.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 107964410 109073317 + MGP_C57BL6NJ_P0067057 Dab1 protein_coding protein_coding MGP_C57BL6NJ_T0067058.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108747951 109072431 + MGP_C57BL6NJ_P0067058 Dab1 protein_coding protein_coding MGP_C57BL6NJ_T0067059.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108748428 109138292 + MGP_C57BL6NJ_P0067059 Dab1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067060.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108748428 109141339 + MGP_C57BL6NJ_P0067060 Dab1 protein_coding protein_coding MGP_C57BL6NJ_T0067061.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108897973 109073317 + MGP_C57BL6NJ_P0067061 Dab1 protein_coding protein_coding MGP_C57BL6NJ_T0067062.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108981673 109071727 + Dab1 protein_coding processed_transcript MGP_C57BL6NJ_T0067063.1 MGP_C57BL6NJ_G0028931.1 mouse_genomes_project 4 108995757 109110262 + MGP_C57BL6NJ_P0067063 Dab1 protein_coding protein_coding MGP_C57BL6NJ_T0100341.1 MGP_C57BL6NJ_G0038387.1 mouse_genomes_project 4 39136221 39136303 + Gm22850 snRNA snRNA MGP_C57BL6NJ_T0067030.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436319 107437834 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0067031.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436324 107489247 + MGP_C57BL6NJ_P0067031 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067032.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436360 107452948 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0067033.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436394 107465109 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0067034.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436691 107440232 + MGP_C57BL6NJ_P0067034 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067035.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107436885 107440596 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0067036.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107437201 107449224 + MGP_C57BL6NJ_P0067036 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067037.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107437489 107489242 + MGP_C57BL6NJ_P0067037 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067038.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107437567 107489242 + MGP_C57BL6NJ_P0067038 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067039.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107439224 107440520 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0067040.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107441215 107489245 + MGP_C57BL6NJ_P0067040 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067041.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107441319 107464489 + Mier1 protein_coding retained_intron MGP_C57BL6NJ_T0067042.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107441339 107466339 + Mier1 protein_coding retained_intron MGP_C57BL6NJ_T0067043.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107464972 107486247 + MGP_C57BL6NJ_P0067043 Mier1 protein_coding protein_coding MGP_C57BL6NJ_T0067044.1 MGP_C57BL6NJ_G0028927.1 mouse_genomes_project 4 107482078 107486316 + Mier1 protein_coding processed_transcript MGP_C57BL6NJ_T0004595.1 MGP_C57BL6NJ_G0003997.1 mouse_genomes_project 4 40928335 40929797 + Fam219aos antisense antisense MGP_C57BL6NJ_T0014795.1 MGP_C57BL6NJ_G0012840.1 mouse_genomes_project 4 19408675 19409474 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010843.1 MGP_C57BL6NJ_G0008928.1 mouse_genomes_project 4 91352931 91353017 + Mir491 miRNA miRNA MGP_C57BL6NJ_T0011846.1 MGP_C57BL6NJ_G0009931.1 mouse_genomes_project 4 140276857 140277145 - Gm24636 misc_RNA misc_RNA MGP_C57BL6NJ_T0015178.1 MGP_C57BL6NJ_G0013223.1 mouse_genomes_project 4 151386607 151387066 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015130.1 MGP_C57BL6NJ_G0013175.1 mouse_genomes_project 4 130153086 130154485 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066745.1 MGP_C57BL6NJ_G0028854.1 mouse_genomes_project 4 92108670 92109243 + MGP_C57BL6NJ_P0066745 Ifna11 protein_coding protein_coding MGP_C57BL6NJ_T0004737.1 MGP_C57BL6NJ_G0004107.1 mouse_genomes_project 4 150163928 150174891 + 4930455G09Rik antisense antisense MGP_C57BL6NJ_T0068023.1 MGP_C57BL6NJ_G0029137.1 mouse_genomes_project 4 126574633 126625716 - MGP_C57BL6NJ_P0068023 Kcnq4 protein_coding protein_coding MGP_C57BL6NJ_T0068024.1 MGP_C57BL6NJ_G0029137.1 mouse_genomes_project 4 126593746 126628750 - Kcnq4 protein_coding processed_transcript MGP_C57BL6NJ_T0069414.1 MGP_C57BL6NJ_G0029454.1 mouse_genomes_project 4 148810663 148837734 - MGP_C57BL6NJ_P0069414 Padi3 protein_coding protein_coding MGP_C57BL6NJ_T0069415.1 MGP_C57BL6NJ_G0029454.1 mouse_genomes_project 4 148810667 148829321 - MGP_C57BL6NJ_P0069415 Padi3 protein_coding protein_coding MGP_C57BL6NJ_T0068062.1 MGP_C57BL6NJ_G0029151.1 mouse_genomes_project 4 129010777 129041532 + MGP_C57BL6NJ_P0068062 Ppt1 protein_coding protein_coding MGP_C57BL6NJ_T0068063.1 MGP_C57BL6NJ_G0029151.1 mouse_genomes_project 4 129010781 129031435 + MGP_C57BL6NJ_P0068063 Ppt1 protein_coding protein_coding MGP_C57BL6NJ_T0068064.1 MGP_C57BL6NJ_G0029151.1 mouse_genomes_project 4 129010785 129041629 + MGP_C57BL6NJ_P0068064 Ppt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068065.1 MGP_C57BL6NJ_G0029151.1 mouse_genomes_project 4 129010789 129032713 + MGP_C57BL6NJ_P0068065 Ppt1 protein_coding protein_coding MGP_C57BL6NJ_T0066743.1 MGP_C57BL6NJ_G0028852.1 mouse_genomes_project 4 92104939 92105512 + MGP_C57BL6NJ_P0066743 Ifna7 protein_coding protein_coding MGP_C57BL6NJ_T0069947.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161611450 161662403 + MGP_C57BL6NJ_P0069947 Dnajc11 protein_coding protein_coding MGP_C57BL6NJ_T0069948.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161611490 161656956 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069949.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161611493 161637961 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069950.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161611498 161661484 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069951.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161611503 161661488 + MGP_C57BL6NJ_P0069951 Dnajc11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069952.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161626851 161648847 + MGP_C57BL6NJ_P0069952 Dnajc11 protein_coding protein_coding MGP_C57BL6NJ_T0069953.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161637608 161651773 + Dnajc11 protein_coding processed_transcript MGP_C57BL6NJ_T0069954.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161648068 161654556 + Dnajc11 protein_coding processed_transcript MGP_C57BL6NJ_T0069955.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161649976 161657317 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069956.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161650045 161651770 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069957.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161659249 161661002 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0069958.1 MGP_C57BL6NJ_G0029594.1 mouse_genomes_project 4 161660008 161661493 + Dnajc11 protein_coding retained_intron MGP_C57BL6NJ_T0008141.1 MGP_C57BL6NJ_G0006650.1 mouse_genomes_project 4 136826946 136829863 + E330017L17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008142.1 MGP_C57BL6NJ_G0006650.1 mouse_genomes_project 4 136826956 136829728 + E330017L17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008143.1 MGP_C57BL6NJ_G0006650.1 mouse_genomes_project 4 136826988 136829482 + E330017L17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008144.1 MGP_C57BL6NJ_G0006650.1 mouse_genomes_project 4 136827163 136843468 + E330017L17Rik lincRNA lincRNA MGP_C57BL6NJ_T0066247.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57557788 57615303 - MGP_C57BL6NJ_P0066247 Ctnnal1 protein_coding protein_coding MGP_C57BL6NJ_T0066248.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57558993 57561173 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066249.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57563842 57564510 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066250.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57572753 57589374 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066251.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57574698 57615283 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066252.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57574961 57578512 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066253.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57578183 57588291 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0066254.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57590409 57615269 - MGP_C57BL6NJ_P0066254 Ctnnal1 protein_coding protein_coding MGP_C57BL6NJ_T0066255.1 MGP_C57BL6NJ_G0028733.1 mouse_genomes_project 4 57594130 57595718 - Ctnnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0010867.1 MGP_C57BL6NJ_G0008952.1 mouse_genomes_project 4 136569806 136569878 - Mir7016 miRNA miRNA MGP_C57BL6NJ_T0070411.1 MGP_C57BL6NJ_G0029678.1 mouse_genomes_project 4 166270274 166271670 - MGP_C57BL6NJ_P0070411 Isg15 protein_coding protein_coding MGP_C57BL6NJ_T0101688.1 MGP_C57BL6NJ_G0039734.1 mouse_genomes_project 4 107023898 107024026 + Gm24869 snoRNA snoRNA MGP_C57BL6NJ_T0014995.1 MGP_C57BL6NJ_G0013040.1 mouse_genomes_project 4 87863398 87864340 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011833.1 MGP_C57BL6NJ_G0009918.1 mouse_genomes_project 4 88923965 88924242 + Gm26069 misc_RNA misc_RNA MGP_C57BL6NJ_T0065430.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429275 33475322 + MGP_C57BL6NJ_P0065430 Rars2 protein_coding protein_coding MGP_C57BL6NJ_T0065431.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429279 33433240 + Rars2 protein_coding processed_transcript MGP_C57BL6NJ_T0065432.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429287 33439754 + Rars2 protein_coding processed_transcript MGP_C57BL6NJ_T0065433.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429292 33475318 + Rars2 protein_coding processed_transcript MGP_C57BL6NJ_T0065434.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429294 33444881 + MGP_C57BL6NJ_P0065434 Rars2 protein_coding protein_coding MGP_C57BL6NJ_T0065435.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33429296 33437746 + Rars2 protein_coding processed_transcript MGP_C57BL6NJ_T0065436.1 MGP_C57BL6NJ_G0028539.1 mouse_genomes_project 4 33462022 33471332 + Rars2 protein_coding processed_transcript MGP_C57BL6NJ_T0014939.1 MGP_C57BL6NJ_G0012984.1 mouse_genomes_project 4 64073881 64074540 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069262.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939410 145968539 + MGP_C57BL6NJ_P0069262 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069263.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939752 145944810 + Hp1bp3 protein_coding processed_transcript MGP_C57BL6NJ_T0069264.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939778 145949834 + MGP_C57BL6NJ_P0069264 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069265.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939779 145967004 + MGP_C57BL6NJ_P0069265 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069266.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939786 145952586 + MGP_C57BL6NJ_P0069266 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069267.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939787 145968539 + MGP_C57BL6NJ_P0069267 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069268.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145939789 145968542 + MGP_C57BL6NJ_P0069268 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069269.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145940279 145953597 + MGP_C57BL6NJ_P0069269 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069270.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145940420 145953584 + Hp1bp3 protein_coding retained_intron MGP_C57BL6NJ_T0069271.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145940446 145946703 + MGP_C57BL6NJ_P0069271 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069272.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145952393 145964449 + MGP_C57BL6NJ_P0069272 Hp1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0069273.1 MGP_C57BL6NJ_G0029414.1 mouse_genomes_project 4 145953496 145958269 + Hp1bp3 protein_coding processed_transcript MGP_C57BL6NJ_T0068346.1 MGP_C57BL6NJ_G0029218.1 mouse_genomes_project 4 133812225 133889356 + MGP_C57BL6NJ_P0068346 Dlgap3 protein_coding protein_coding MGP_C57BL6NJ_T0068347.1 MGP_C57BL6NJ_G0029218.1 mouse_genomes_project 4 133815865 133889356 + MGP_C57BL6NJ_P0068347 Dlgap3 protein_coding protein_coding MGP_C57BL6NJ_T0068348.1 MGP_C57BL6NJ_G0029218.1 mouse_genomes_project 4 133838926 133888702 + MGP_C57BL6NJ_P0068348 Dlgap3 protein_coding protein_coding MGP_C57BL6NJ_T0068349.1 MGP_C57BL6NJ_G0029218.1 mouse_genomes_project 4 133848172 133861124 + Dlgap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070115.1 MGP_C57BL6NJ_G0029623.1 mouse_genomes_project 4 164073386 164076596 - MGP_C57BL6NJ_P0070115 protein_coding protein_coding MGP_C57BL6NJ_T0070116.1 MGP_C57BL6NJ_G0029623.1 mouse_genomes_project 4 164074041 164076596 - protein_coding processed_transcript MGP_C57BL6NJ_T0070117.1 MGP_C57BL6NJ_G0029623.1 mouse_genomes_project 4 164074257 164076562 - MGP_C57BL6NJ_P0070117 protein_coding protein_coding MGP_C57BL6NJ_T0070118.1 MGP_C57BL6NJ_G0029623.1 mouse_genomes_project 4 164074374 164076068 - protein_coding processed_transcript MGP_C57BL6NJ_T0070119.1 MGP_C57BL6NJ_G0029623.1 mouse_genomes_project 4 164075468 164076536 - protein_coding processed_transcript MGP_C57BL6NJ_T0015049.1 MGP_C57BL6NJ_G0013094.1 mouse_genomes_project 4 108295389 108296372 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010815.1 MGP_C57BL6NJ_G0008900.1 mouse_genomes_project 4 13549646 13549750 - Gm22690 miRNA miRNA MGP_C57BL6NJ_T0004726.1 MGP_C57BL6NJ_G0004098.1 mouse_genomes_project 4 148088382 148090143 + Gm13029 antisense antisense MGP_C57BL6NJ_T0008042.1 MGP_C57BL6NJ_G0006574.1 mouse_genomes_project 4 64801167 64806187 + Gm11482 lincRNA lincRNA MGP_C57BL6NJ_T0011841.1 MGP_C57BL6NJ_G0009926.1 mouse_genomes_project 4 120227052 120227150 + Gm24045 misc_RNA misc_RNA MGP_C57BL6NJ_T0067113.1 MGP_C57BL6NJ_G0028948.1 mouse_genomes_project 4 111245761 111261312 + MGP_C57BL6NJ_P0067113 Fam151a protein_coding protein_coding MGP_C57BL6NJ_T0008159.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139303543 139304837 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008160.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139303543 139305888 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008161.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139303543 139305890 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008162.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139303558 139305625 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008163.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139304494 139305890 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008164.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139304683 139305861 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0008165.1 MGP_C57BL6NJ_G0006662.1 mouse_genomes_project 4 139305052 139305890 + Snhg12 lincRNA lincRNA MGP_C57BL6NJ_T0007984.1 MGP_C57BL6NJ_G0006524.1 mouse_genomes_project 4 11488733 11504809 - 1700120G11Rik lincRNA lincRNA MGP_C57BL6NJ_T0004695.1 MGP_C57BL6NJ_G0004073.1 mouse_genomes_project 4 131531407 131533313 - Gm12932 antisense antisense MGP_C57BL6NJ_T0008112.1 MGP_C57BL6NJ_G0006631.1 mouse_genomes_project 4 126487524 126494410 + Gm12860 lincRNA lincRNA MGP_C57BL6NJ_T0067585.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121493632 121499427 - Rad54l protein_coding processed_transcript MGP_C57BL6NJ_T0067586.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121496284 121525216 - MGP_C57BL6NJ_P0067586 Rad54l protein_coding protein_coding MGP_C57BL6NJ_T0067587.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121496343 121525190 - MGP_C57BL6NJ_P0067587 Rad54l protein_coding protein_coding MGP_C57BL6NJ_T0067588.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121509390 121524513 - Rad54l protein_coding processed_transcript MGP_C57BL6NJ_T0067589.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121510689 121512185 - Rad54l protein_coding processed_transcript MGP_C57BL6NJ_T0067590.1 MGP_C57BL6NJ_G0029041.1 mouse_genomes_project 4 121517053 121525221 - Rad54l protein_coding processed_transcript MGP_C57BL6NJ_T0014888.1 MGP_C57BL6NJ_G0012933.1 mouse_genomes_project 4 47209311 47209446 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011823.1 MGP_C57BL6NJ_G0009908.1 mouse_genomes_project 4 43641799 43641876 + Gm27265 misc_RNA misc_RNA MGP_C57BL6NJ_T0015226.1 MGP_C57BL6NJ_G0013271.1 mouse_genomes_project 4 165526351 165526742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014857.1 MGP_C57BL6NJ_G0012902.1 mouse_genomes_project 4 36300322 36300790 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004699.1 MGP_C57BL6NJ_G0004076.1 mouse_genomes_project 4 135002161 135004108 + Hmgb4os antisense antisense MGP_C57BL6NJ_T0015087.1 MGP_C57BL6NJ_G0013132.1 mouse_genomes_project 4 120790895 120791372 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065720.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42661580 - MGP_C57BL6NJ_P0065720 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065721.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42661975 - MGP_C57BL6NJ_P0065721 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065722.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42656046 - MGP_C57BL6NJ_P0065722 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065723.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42661552 - MGP_C57BL6NJ_P0065723 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065724.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42656049 - MGP_C57BL6NJ_P0065724 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065725.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42648195 42661975 - MGP_C57BL6NJ_P0065725 Fam214b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065726.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42652100 42656053 - MGP_C57BL6NJ_P0065726 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065727.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42652381 42653083 - MGP_C57BL6NJ_P0065727 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065728.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42652484 42655089 - MGP_C57BL6NJ_P0065728 Fam214b protein_coding protein_coding MGP_C57BL6NJ_T0065729.1 MGP_C57BL6NJ_G0028617.1 mouse_genomes_project 4 42652758 42661514 - Fam214b protein_coding processed_transcript MGP_C57BL6NJ_T0015136.1 MGP_C57BL6NJ_G0013181.1 mouse_genomes_project 4 133101346 133101689 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015045.1 MGP_C57BL6NJ_G0013090.1 mouse_genomes_project 4 106079486 106080506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015120.1 MGP_C57BL6NJ_G0013165.1 mouse_genomes_project 4 127307430 127307755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069078.1 MGP_C57BL6NJ_G0029372.1 mouse_genomes_project 4 143112889 143138814 + MGP_C57BL6NJ_P0069078 Il22ra1 protein_coding protein_coding MGP_C57BL6NJ_T0068652.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138686431 138761559 - MGP_C57BL6NJ_P0068652 Ptpru protein_coding protein_coding MGP_C57BL6NJ_T0068653.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138686432 138686896 - Ptpru protein_coding processed_transcript MGP_C57BL6NJ_T0068654.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138687472 138761427 - MGP_C57BL6NJ_P0068654 Ptpru protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068655.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138687472 138761502 - MGP_C57BL6NJ_P0068655 Ptpru protein_coding protein_coding MGP_C57BL6NJ_T0068656.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138690110 138761523 - Ptpru protein_coding processed_transcript MGP_C57BL6NJ_T0068657.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138703160 138744732 - MGP_C57BL6NJ_P0068657 Ptpru protein_coding protein_coding MGP_C57BL6NJ_T0068658.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138708464 138724513 - Ptpru protein_coding processed_transcript MGP_C57BL6NJ_T0068659.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138713525 138718297 - Ptpru protein_coding retained_intron MGP_C57BL6NJ_T0068660.1 MGP_C57BL6NJ_G0029281.1 mouse_genomes_project 4 138721256 138725137 - Ptpru protein_coding retained_intron MGP_C57BL6NJ_T0069490.1 MGP_C57BL6NJ_G0029471.1 mouse_genomes_project 4 149507527 149512046 + MGP_C57BL6NJ_P0069490 Hspb7 protein_coding protein_coding MGP_C57BL6NJ_T0103168.1 MGP_C57BL6NJ_G0040962.1 mouse_genomes_project 4 128853129 128869168 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067076.1 MGP_C57BL6NJ_G0028937.1 mouse_genomes_project 4 109592600 109669281 + MGP_C57BL6NJ_P0067076 Plpp3 protein_coding protein_coding MGP_C57BL6NJ_T0070329.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165894803 165906705 + MGP_C57BL6NJ_P0070329 Dvl1 protein_coding protein_coding MGP_C57BL6NJ_T0070330.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165894862 165906280 + MGP_C57BL6NJ_P0070330 Dvl1 protein_coding protein_coding MGP_C57BL6NJ_T0070331.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165894867 165906704 + Dvl1 protein_coding retained_intron MGP_C57BL6NJ_T0070332.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165894967 165906705 + Dvl1 protein_coding retained_intron MGP_C57BL6NJ_T0070333.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165894987 165906705 + Dvl1 protein_coding retained_intron MGP_C57BL6NJ_T0070334.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165895072 165906705 + Dvl1 protein_coding retained_intron MGP_C57BL6NJ_T0070335.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165900811 165901353 + Dvl1 protein_coding processed_transcript MGP_C57BL6NJ_T0070336.1 MGP_C57BL6NJ_G0029663.1 mouse_genomes_project 4 165901973 165903634 + Dvl1 protein_coding retained_intron MGP_C57BL6NJ_T0101708.1 MGP_C57BL6NJ_G0039754.1 mouse_genomes_project 4 137698234 137698364 - Gm22660 snoRNA snoRNA MGP_C57BL6NJ_T0014878.1 MGP_C57BL6NJ_G0012923.1 mouse_genomes_project 4 44176932 44177348 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068783.1 MGP_C57BL6NJ_G0029306.1 mouse_genomes_project 4 139917902 139948960 - MGP_C57BL6NJ_P0068783 Stx12 protein_coding protein_coding MGP_C57BL6NJ_T0068784.1 MGP_C57BL6NJ_G0029306.1 mouse_genomes_project 4 139921447 139927633 - Stx12 protein_coding processed_transcript MGP_C57BL6NJ_T0066327.1 MGP_C57BL6NJ_G0028750.1 mouse_genomes_project 4 59868834 59891131 - MGP_C57BL6NJ_P0066327 Ptgr1 protein_coding protein_coding MGP_C57BL6NJ_T0015223.1 MGP_C57BL6NJ_G0013268.1 mouse_genomes_project 4 163945058 163945749 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004756.1 MGP_C57BL6NJ_G0004120.1 mouse_genomes_project 4 158712539 158733643 + Ube4bos1 antisense antisense MGP_C57BL6NJ_T0004757.1 MGP_C57BL6NJ_G0004120.1 mouse_genomes_project 4 158712568 158726608 + Ube4bos1 antisense antisense MGP_C57BL6NJ_T0069333.1 MGP_C57BL6NJ_G0029436.1 mouse_genomes_project 4 146936012 146965296 - MGP_C57BL6NJ_P0069333 Minos1 protein_coding protein_coding MGP_C57BL6NJ_T0069334.1 MGP_C57BL6NJ_G0029436.1 mouse_genomes_project 4 146937989 146940158 - Minos1 protein_coding processed_transcript MGP_C57BL6NJ_T0069335.1 MGP_C57BL6NJ_G0029436.1 mouse_genomes_project 4 146938021 146945442 - Minos1 protein_coding processed_transcript MGP_C57BL6NJ_T0069336.1 MGP_C57BL6NJ_G0029436.1 mouse_genomes_project 4 146938100 146965177 - Minos1 protein_coding processed_transcript MGP_C57BL6NJ_T0014808.1 MGP_C57BL6NJ_G0012853.1 mouse_genomes_project 4 23392080 23392774 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008094.1 MGP_C57BL6NJ_G0006617.1 mouse_genomes_project 4 111367599 111373830 - Gm12746 lincRNA lincRNA MGP_C57BL6NJ_T0067138.1 MGP_C57BL6NJ_G0028951.1 mouse_genomes_project 4 111606567 111617558 - MGP_C57BL6NJ_P0067138 Mrpl37 protein_coding protein_coding MGP_C57BL6NJ_T0067139.1 MGP_C57BL6NJ_G0028951.1 mouse_genomes_project 4 111606578 111610644 - Mrpl37 protein_coding retained_intron MGP_C57BL6NJ_T0067140.1 MGP_C57BL6NJ_G0028951.1 mouse_genomes_project 4 111606661 111615460 - Mrpl37 protein_coding processed_transcript MGP_C57BL6NJ_T0067141.1 MGP_C57BL6NJ_G0028951.1 mouse_genomes_project 4 111606668 111617510 - Mrpl37 protein_coding processed_transcript MGP_C57BL6NJ_T0067142.1 MGP_C57BL6NJ_G0028951.1 mouse_genomes_project 4 111615085 111616047 - Mrpl37 protein_coding retained_intron MGP_C57BL6NJ_T0067501.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120339812 120344992 + MGP_C57BL6NJ_P0067501 Pdzk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0067502.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120339812 120344992 + MGP_C57BL6NJ_P0067502 Pdzk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0067503.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120339827 120344997 + MGP_C57BL6NJ_P0067503 Pdzk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0067504.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120339827 120344997 + MGP_C57BL6NJ_P0067504 Pdzk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0067505.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120340147 120342451 + Pdzk1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067506.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120341291 120344962 + Pdzk1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067507.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120341358 120342336 + Pdzk1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067508.1 MGP_C57BL6NJ_G0029021.1 mouse_genomes_project 4 120342036 120344962 + Pdzk1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0069733.1 MGP_C57BL6NJ_G0029557.1 mouse_genomes_project 4 157856820 157859937 + MGP_C57BL6NJ_P0069733 Srm protein_coding protein_coding MGP_C57BL6NJ_T0069734.1 MGP_C57BL6NJ_G0029557.1 mouse_genomes_project 4 157857235 157859517 + Srm protein_coding retained_intron MGP_C57BL6NJ_T0069735.1 MGP_C57BL6NJ_G0029557.1 mouse_genomes_project 4 157859211 157860311 + Srm protein_coding processed_transcript MGP_C57BL6NJ_T0068258.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132789227 132797185 - MGP_C57BL6NJ_P0068258 Map7d1 protein_coding protein_coding MGP_C57BL6NJ_T0068259.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132789227 132814767 - MGP_C57BL6NJ_P0068259 Map7d1 protein_coding protein_coding MGP_C57BL6NJ_T0068260.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132789227 132814773 - MGP_C57BL6NJ_P0068260 Map7d1 protein_coding protein_coding MGP_C57BL6NJ_T0068261.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132789227 132814833 - MGP_C57BL6NJ_P0068261 Map7d1 protein_coding protein_coding MGP_C57BL6NJ_T0068262.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132790023 132790609 - Map7d1 protein_coding retained_intron MGP_C57BL6NJ_T0068263.1 MGP_C57BL6NJ_G0029199.1 mouse_genomes_project 4 132790680 132791837 - Map7d1 protein_coding retained_intron MGP_C57BL6NJ_T0068216.1 MGP_C57BL6NJ_G0029192.1 mouse_genomes_project 4 132572545 132581158 + MGP_C57BL6NJ_P0068216 Mrps15 protein_coding protein_coding MGP_C57BL6NJ_T0068217.1 MGP_C57BL6NJ_G0029192.1 mouse_genomes_project 4 132572597 132577586 + Mrps15 protein_coding processed_transcript MGP_C57BL6NJ_T0068218.1 MGP_C57BL6NJ_G0029192.1 mouse_genomes_project 4 132572854 132576104 + Mrps15 protein_coding processed_transcript MGP_C57BL6NJ_T0069027.1 MGP_C57BL6NJ_G0029362.1 mouse_genomes_project 4 142270511 142277075 + MGP_C57BL6NJ_P0069027 Syf2 protein_coding protein_coding MGP_C57BL6NJ_T0069028.1 MGP_C57BL6NJ_G0029362.1 mouse_genomes_project 4 142270515 142274663 + Syf2 protein_coding retained_intron MGP_C57BL6NJ_T0069029.1 MGP_C57BL6NJ_G0029362.1 mouse_genomes_project 4 142270623 142275692 + Syf2 protein_coding retained_intron MGP_C57BL6NJ_T0068549.1 MGP_C57BL6NJ_G0029261.1 mouse_genomes_project 4 136561668 136591511 - MGP_C57BL6NJ_P0068549 Tmem39b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068550.1 MGP_C57BL6NJ_G0029261.1 mouse_genomes_project 4 136561879 136591433 - MGP_C57BL6NJ_P0068550 Tmem39b protein_coding protein_coding MGP_C57BL6NJ_T0068551.1 MGP_C57BL6NJ_G0029261.1 mouse_genomes_project 4 136561912 136564205 - Tmem39b protein_coding retained_intron MGP_C57BL6NJ_T0068552.1 MGP_C57BL6NJ_G0029261.1 mouse_genomes_project 4 136582080 136591459 - MGP_C57BL6NJ_P0068552 Tmem39b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100395.1 MGP_C57BL6NJ_G0038441.1 mouse_genomes_project 4 136323261 136323401 + Gm24621 snRNA snRNA MGP_C57BL6NJ_T0014968.1 MGP_C57BL6NJ_G0013013.1 mouse_genomes_project 4 77359243 77360624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008105.1 MGP_C57BL6NJ_G0006624.1 mouse_genomes_project 4 119899919 119906693 + Gm12829 lincRNA lincRNA MGP_C57BL6NJ_T0065223.1 MGP_C57BL6NJ_G0028485.1 mouse_genomes_project 4 13331341 13359613 - MGP_C57BL6NJ_P0065223 Decr1 protein_coding protein_coding MGP_C57BL6NJ_T0065224.1 MGP_C57BL6NJ_G0028485.1 mouse_genomes_project 4 13347082 13359381 - Decr1 protein_coding processed_transcript MGP_C57BL6NJ_T0065225.1 MGP_C57BL6NJ_G0028485.1 mouse_genomes_project 4 13357796 13358595 - Decr1 protein_coding processed_transcript MGP_C57BL6NJ_T0004596.1 MGP_C57BL6NJ_G0003998.1 mouse_genomes_project 4 41061580 41063619 + Gm12406 antisense antisense MGP_C57BL6NJ_T0069533.1 MGP_C57BL6NJ_G0029481.1 mouse_genomes_project 4 149882766 149896548 + MGP_C57BL6NJ_P0069533 Agmat protein_coding protein_coding MGP_C57BL6NJ_T0014908.1 MGP_C57BL6NJ_G0012953.1 mouse_genomes_project 4 53330831 53332730 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015211.1 MGP_C57BL6NJ_G0013256.1 mouse_genomes_project 4 157098946 157099267 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103143.1 MGP_C57BL6NJ_G0040937.1 mouse_genomes_project 4 91878708 91880100 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004677.1 MGP_C57BL6NJ_G0004058.1 mouse_genomes_project 4 123466275 123468650 + Gm12841 antisense antisense MGP_C57BL6NJ_T0065012.1 MGP_C57BL6NJ_G0028439.1 mouse_genomes_project 4 552048 592291 - MGP_C57BL6NJ_P0065012 Plag1 protein_coding protein_coding MGP_C57BL6NJ_T0065013.1 MGP_C57BL6NJ_G0028439.1 mouse_genomes_project 4 555942 592314 - MGP_C57BL6NJ_P0065013 Plag1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065014.1 MGP_C57BL6NJ_G0028439.1 mouse_genomes_project 4 556601 592332 - MGP_C57BL6NJ_P0065014 Plag1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065015.1 MGP_C57BL6NJ_G0028439.1 mouse_genomes_project 4 562909 592302 - Plag1 protein_coding retained_intron MGP_C57BL6NJ_T0068771.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139826290 139834956 + Rpa2 protein_coding processed_transcript MGP_C57BL6NJ_T0068772.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139826293 139836998 + MGP_C57BL6NJ_P0068772 Rpa2 protein_coding protein_coding MGP_C57BL6NJ_T0068773.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139826334 139832481 + Rpa2 protein_coding retained_intron MGP_C57BL6NJ_T0068774.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139826593 139830188 + Rpa2 protein_coding retained_intron MGP_C57BL6NJ_T0068775.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139828568 139830376 + Rpa2 protein_coding retained_intron MGP_C57BL6NJ_T0068776.1 MGP_C57BL6NJ_G0029303.1 mouse_genomes_project 4 139833373 139835408 + MGP_C57BL6NJ_P0068776 Rpa2 protein_coding protein_coding MGP_C57BL6NJ_T0070337.1 MGP_C57BL6NJ_G0029664.1 mouse_genomes_project 4 165906669 165910764 - MGP_C57BL6NJ_P0070337 Tas1r3 protein_coding protein_coding MGP_C57BL6NJ_T0007978.1 MGP_C57BL6NJ_G0006518.1 mouse_genomes_project 4 9081991 9089768 + Gm26895 lincRNA lincRNA MGP_C57BL6NJ_T0069323.1 MGP_C57BL6NJ_G0029432.1 mouse_genomes_project 4 146793930 146795179 + MGP_C57BL6NJ_P0069323 Rnf186 protein_coding protein_coding MGP_C57BL6NJ_T0008152.1 MGP_C57BL6NJ_G0006656.1 mouse_genomes_project 4 138366539 138385896 + Gm831 lincRNA lincRNA MGP_C57BL6NJ_T0004647.1 MGP_C57BL6NJ_G0004035.1 mouse_genomes_project 4 103103215 103105435 + Gm12705 antisense antisense MGP_C57BL6NJ_T0014774.1 MGP_C57BL6NJ_G0012819.1 mouse_genomes_project 4 13147729 13148567 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014825.1 MGP_C57BL6NJ_G0012870.1 mouse_genomes_project 4 26916713 26917472 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014946.1 MGP_C57BL6NJ_G0012991.1 mouse_genomes_project 4 68924399 68925026 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066773.1 MGP_C57BL6NJ_G0028866.1 mouse_genomes_project 4 95645820 95648713 - MGP_C57BL6NJ_P0066773 Izumo3 protein_coding protein_coding MGP_C57BL6NJ_T0066774.1 MGP_C57BL6NJ_G0028866.1 mouse_genomes_project 4 95645829 95648726 - MGP_C57BL6NJ_P0066774 Izumo3 protein_coding protein_coding MGP_C57BL6NJ_T0014863.1 MGP_C57BL6NJ_G0012908.1 mouse_genomes_project 4 38498708 38499468 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069942.1 MGP_C57BL6NJ_G0029593.1 mouse_genomes_project 4 160694781 160696661 + MGP_C57BL6NJ_P0069942 Gm13090 protein_coding protein_coding MGP_C57BL6NJ_T0008134.1 MGP_C57BL6NJ_G0006644.1 mouse_genomes_project 4 135405732 135406709 + Gm12958 lincRNA lincRNA MGP_C57BL6NJ_T0101706.1 MGP_C57BL6NJ_G0039752.1 mouse_genomes_project 4 137593827 137593910 + Gm24091 snoRNA snoRNA MGP_C57BL6NJ_T0069916.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160503568 160525374 + MGP_C57BL6NJ_P0069916 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069918.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160509154 160539038 + MGP_C57BL6NJ_P0069918 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069919.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160509189 160539038 + MGP_C57BL6NJ_P0069919 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069920.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160514299 160538168 + MGP_C57BL6NJ_P0069920 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069921.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160518880 160525365 + MGP_C57BL6NJ_P0069921 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069922.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160518961 160520911 + Tnfrsf9 protein_coding processed_transcript MGP_C57BL6NJ_T0069923.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160518961 160539038 + MGP_C57BL6NJ_P0069923 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069924.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160520638 160538003 + MGP_C57BL6NJ_P0069924 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0069925.1 MGP_C57BL6NJ_G0029588.1 mouse_genomes_project 4 160520759 160526519 + MGP_C57BL6NJ_P0069925 Tnfrsf9 protein_coding protein_coding MGP_C57BL6NJ_T0014827.1 MGP_C57BL6NJ_G0012872.1 mouse_genomes_project 4 26953298 26953562 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065639.1 MGP_C57BL6NJ_G0028593.1 mouse_genomes_project 4 41600603 41601981 + MGP_C57BL6NJ_P0065639 protein_coding protein_coding MGP_C57BL6NJ_T0066586.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85629865 85697176 - MGP_C57BL6NJ_P0066586 Zdhhc21 protein_coding protein_coding MGP_C57BL6NJ_T0066587.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85635183 85697064 - MGP_C57BL6NJ_P0066587 Zdhhc21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066588.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85637345 85697461 - MGP_C57BL6NJ_P0066588 Zdhhc21 protein_coding protein_coding MGP_C57BL6NJ_T0066589.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85672952 85686867 - MGP_C57BL6NJ_P0066589 Zdhhc21 protein_coding protein_coding MGP_C57BL6NJ_T0066590.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85675008 85697057 - Zdhhc21 protein_coding retained_intron MGP_C57BL6NJ_T0066591.1 MGP_C57BL6NJ_G0028819.1 mouse_genomes_project 4 85683669 85697076 - MGP_C57BL6NJ_P0066591 Zdhhc21 protein_coding protein_coding MGP_C57BL6NJ_T0014967.1 MGP_C57BL6NJ_G0013012.1 mouse_genomes_project 4 77339675 77339990 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070305.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165848575 165849340 + Mrpl20 protein_coding processed_transcript MGP_C57BL6NJ_T0070306.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165849218 165854606 + MGP_C57BL6NJ_P0070306 Mrpl20 protein_coding protein_coding MGP_C57BL6NJ_T0070307.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165849344 165854573 + MGP_C57BL6NJ_P0070307 Mrpl20 protein_coding protein_coding MGP_C57BL6NJ_T0070308.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165849347 165855750 + MGP_C57BL6NJ_P0070308 Mrpl20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070309.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165849349 165853252 + MGP_C57BL6NJ_P0070309 Mrpl20 protein_coding protein_coding MGP_C57BL6NJ_T0070310.1 MGP_C57BL6NJ_G0029659.1 mouse_genomes_project 4 165849456 165854569 + Mrpl20 protein_coding processed_transcript MGP_C57BL6NJ_T0070369.1 MGP_C57BL6NJ_G0029670.1 mouse_genomes_project 4 166009058 166013370 + MGP_C57BL6NJ_P0070369 Fam132a protein_coding protein_coding MGP_C57BL6NJ_T0070370.1 MGP_C57BL6NJ_G0029670.1 mouse_genomes_project 4 166011301 166011923 + Fam132a protein_coding processed_transcript MGP_C57BL6NJ_T0070371.1 MGP_C57BL6NJ_G0029670.1 mouse_genomes_project 4 166011837 166013362 + Fam132a protein_coding processed_transcript MGP_C57BL6NJ_T0101701.1 MGP_C57BL6NJ_G0039747.1 mouse_genomes_project 4 129539974 129540105 + Gm25788 snoRNA snoRNA MGP_C57BL6NJ_T0067327.1 MGP_C57BL6NJ_G0028985.1 mouse_genomes_project 4 113532560 113533781 - MGP_C57BL6NJ_P0067327 A730015C16Rik protein_coding protein_coding MGP_C57BL6NJ_T0066124.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48546145 48586322 - MGP_C57BL6NJ_P0066124 Tex10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066125.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48546145 48590857 - MGP_C57BL6NJ_P0066125 Tex10 protein_coding protein_coding MGP_C57BL6NJ_T0066126.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48546243 48590820 - MGP_C57BL6NJ_P0066126 Tex10 protein_coding protein_coding MGP_C57BL6NJ_T0066127.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48575584 48576719 - Tex10 protein_coding retained_intron MGP_C57BL6NJ_T0066128.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48585104 48587394 - Tex10 protein_coding processed_transcript MGP_C57BL6NJ_T0066129.1 MGP_C57BL6NJ_G0028694.1 mouse_genomes_project 4 48586606 48590741 - Tex10 protein_coding retained_intron MGP_C57BL6NJ_T0065638.1 MGP_C57BL6NJ_G0028592.1 mouse_genomes_project 4 41600427 42016300 + MGP_C57BL6NJ_P0065638 Gm10600 protein_coding protein_coding MGP_C57BL6NJ_T0100394.1 MGP_C57BL6NJ_G0038440.1 mouse_genomes_project 4 133939552 133939655 - Gm22221 snRNA snRNA MGP_C57BL6NJ_T0101707.1 MGP_C57BL6NJ_G0039753.1 mouse_genomes_project 4 137606311 137606394 + Gm23711 snoRNA snoRNA MGP_C57BL6NJ_T0008095.1 MGP_C57BL6NJ_G0006618.1 mouse_genomes_project 4 112266568 112341281 + 1700047F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008096.1 MGP_C57BL6NJ_G0006618.1 mouse_genomes_project 4 112266600 112286717 + 1700047F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008097.1 MGP_C57BL6NJ_G0006618.1 mouse_genomes_project 4 112285163 112295087 + 1700047F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008098.1 MGP_C57BL6NJ_G0006618.1 mouse_genomes_project 4 112285186 112286774 + 1700047F07Rik lincRNA lincRNA MGP_C57BL6NJ_T0099103.1 MGP_C57BL6NJ_G0037167.1 mouse_genomes_project 4 84715228 84715339 + n-R5s187 rRNA rRNA MGP_C57BL6NJ_T0010892.1 MGP_C57BL6NJ_G0008977.1 mouse_genomes_project 4 149428308 149428385 + Gm25690 miRNA miRNA MGP_C57BL6NJ_T0015093.1 MGP_C57BL6NJ_G0013138.1 mouse_genomes_project 4 122330633 122331080 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065596.1 MGP_C57BL6NJ_G0028581.1 mouse_genomes_project 4 41177031 41185404 - MGP_C57BL6NJ_P0065596 Dctn3 protein_coding protein_coding MGP_C57BL6NJ_T0065597.1 MGP_C57BL6NJ_G0028581.1 mouse_genomes_project 4 41177031 41185397 - MGP_C57BL6NJ_P0065597 Dctn3 protein_coding protein_coding MGP_C57BL6NJ_T0065598.1 MGP_C57BL6NJ_G0028581.1 mouse_genomes_project 4 41182001 41185371 - Dctn3 protein_coding processed_transcript MGP_C57BL6NJ_T0065180.1 MGP_C57BL6NJ_G0028472.1 mouse_genomes_project 4 9080882 9082588 - MGP_C57BL6NJ_P0065180 Gm10604 protein_coding protein_coding MGP_C57BL6NJ_T0069621.1 MGP_C57BL6NJ_G0029526.1 mouse_genomes_project 4 153148435 153157791 - MGP_C57BL6NJ_P0069621 Gm438 protein_coding protein_coding MGP_C57BL6NJ_T0066922.1 MGP_C57BL6NJ_G0028900.1 mouse_genomes_project 4 103288243 103289602 + MGP_C57BL6NJ_P0066922 Gm12689 protein_coding protein_coding MGP_C57BL6NJ_T0069284.1 MGP_C57BL6NJ_G0029418.1 mouse_genomes_project 4 146051337 146068525 - MGP_C57BL6NJ_P0069284 Pink1 protein_coding protein_coding MGP_C57BL6NJ_T0069285.1 MGP_C57BL6NJ_G0029418.1 mouse_genomes_project 4 146051851 146068546 - MGP_C57BL6NJ_P0069285 Pink1 protein_coding protein_coding MGP_C57BL6NJ_T0066414.1 MGP_C57BL6NJ_G0028778.1 mouse_genomes_project 4 63624170 63626590 - MGP_C57BL6NJ_P0066414 Pole3 protein_coding protein_coding MGP_C57BL6NJ_T0066415.1 MGP_C57BL6NJ_G0028778.1 mouse_genomes_project 4 63624170 63626590 - MGP_C57BL6NJ_P0066415 Pole3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066416.1 MGP_C57BL6NJ_G0028778.1 mouse_genomes_project 4 63625856 63626560 - Pole3 protein_coding retained_intron MGP_C57BL6NJ_T0010810.1 MGP_C57BL6NJ_G0008895.1 mouse_genomes_project 4 8193127 8193213 + Mir684-2 miRNA miRNA MGP_C57BL6NJ_T0004732.1 MGP_C57BL6NJ_G0004103.1 mouse_genomes_project 4 149732089 149733668 + AI507597 antisense antisense MGP_C57BL6NJ_T0004733.1 MGP_C57BL6NJ_G0004103.1 mouse_genomes_project 4 149732417 149733668 + AI507597 antisense antisense MGP_C57BL6NJ_T0067835.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123811554 123897816 - MGP_C57BL6NJ_P0067835 Ptprf protein_coding protein_coding MGP_C57BL6NJ_T0067836.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123811561 123897647 - MGP_C57BL6NJ_P0067836 Ptprf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067837.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123812330 123821022 - Ptprf protein_coding processed_transcript MGP_C57BL6NJ_T0067838.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123812346 123839759 - MGP_C57BL6NJ_P0067838 Ptprf protein_coding protein_coding MGP_C57BL6NJ_T0067839.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123812351 123839330 - MGP_C57BL6NJ_P0067839 Ptprf protein_coding protein_coding MGP_C57BL6NJ_T0067840.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123813201 123814083 - Ptprf protein_coding processed_transcript MGP_C57BL6NJ_T0067841.1 MGP_C57BL6NJ_G0029087.1 mouse_genomes_project 4 123829471 123834414 - Ptprf protein_coding processed_transcript MGP_C57BL6NJ_T0066135.1 MGP_C57BL6NJ_G0028696.1 mouse_genomes_project 4 48708328 48803510 + MGP_C57BL6NJ_P0066135 Tmeff1 protein_coding protein_coding MGP_C57BL6NJ_T0066136.1 MGP_C57BL6NJ_G0028696.1 mouse_genomes_project 4 48708519 48799507 + MGP_C57BL6NJ_P0066136 Tmeff1 protein_coding protein_coding MGP_C57BL6NJ_T0066137.1 MGP_C57BL6NJ_G0028696.1 mouse_genomes_project 4 48708705 48799892 + MGP_C57BL6NJ_P0066137 Tmeff1 protein_coding protein_coding MGP_C57BL6NJ_T0066138.1 MGP_C57BL6NJ_G0028696.1 mouse_genomes_project 4 48774314 48797661 + MGP_C57BL6NJ_P0066138 Tmeff1 protein_coding protein_coding MGP_C57BL6NJ_T0066556.1 MGP_C57BL6NJ_G0028813.1 mouse_genomes_project 4 82625943 82626462 - MGP_C57BL6NJ_P0066556 mt-Nd6 protein_coding protein_coding MGP_C57BL6NJ_T0101689.1 MGP_C57BL6NJ_G0039735.1 mouse_genomes_project 4 107936761 107936890 - Gm25877 snoRNA snoRNA MGP_C57BL6NJ_T0069157.1 MGP_C57BL6NJ_G0029390.1 mouse_genomes_project 4 143961520 143982446 + MGP_C57BL6NJ_P0069157 Htr1d protein_coding protein_coding MGP_C57BL6NJ_T0069158.1 MGP_C57BL6NJ_G0029390.1 mouse_genomes_project 4 143961522 143981812 + MGP_C57BL6NJ_P0069158 Htr1d protein_coding protein_coding MGP_C57BL6NJ_T0069159.1 MGP_C57BL6NJ_G0029390.1 mouse_genomes_project 4 143961526 143981812 + MGP_C57BL6NJ_P0069159 Htr1d protein_coding protein_coding MGP_C57BL6NJ_T0069160.1 MGP_C57BL6NJ_G0029390.1 mouse_genomes_project 4 143962588 143980018 + Htr1d protein_coding processed_transcript MGP_C57BL6NJ_T0001552.1 MGP_C57BL6NJ_G0001452.1 mouse_genomes_project 4 110782804 110783846 - TEC TEC MGP_C57BL6NJ_T0011820.1 MGP_C57BL6NJ_G0009905.1 mouse_genomes_project 4 31148214 31148481 + Gm24371 misc_RNA misc_RNA MGP_C57BL6NJ_T0066393.1 MGP_C57BL6NJ_G0028772.1 mouse_genomes_project 4 63498116 63516519 + MGP_C57BL6NJ_P0066393 Prpf4 protein_coding protein_coding MGP_C57BL6NJ_T0066394.1 MGP_C57BL6NJ_G0028772.1 mouse_genomes_project 4 63511372 63512860 + Prpf4 protein_coding processed_transcript MGP_C57BL6NJ_T0065584.1 MGP_C57BL6NJ_G0028576.1 mouse_genomes_project 4 40987349 41060361 + MGP_C57BL6NJ_P0065584 Dnaic1 protein_coding protein_coding MGP_C57BL6NJ_T0065585.1 MGP_C57BL6NJ_G0028576.1 mouse_genomes_project 4 41053846 41060361 + Dnaic1 protein_coding retained_intron MGP_C57BL6NJ_T0065586.1 MGP_C57BL6NJ_G0028576.1 mouse_genomes_project 4 41055550 41060361 + MGP_C57BL6NJ_P0065586 Dnaic1 protein_coding protein_coding MGP_C57BL6NJ_T0014747.1 MGP_C57BL6NJ_G0012792.1 mouse_genomes_project 4 5843260 5843658 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010866.1 MGP_C57BL6NJ_G0008951.1 mouse_genomes_project 4 136435303 136435432 - Mir8119 miRNA miRNA MGP_C57BL6NJ_T0015220.1 MGP_C57BL6NJ_G0013265.1 mouse_genomes_project 4 160429492 160429837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066077.1 MGP_C57BL6NJ_G0028682.1 mouse_genomes_project 4 46592419 46642228 - MGP_C57BL6NJ_P0066077 Tbc1d2 protein_coding protein_coding MGP_C57BL6NJ_T0066078.1 MGP_C57BL6NJ_G0028682.1 mouse_genomes_project 4 46622750 46642228 - MGP_C57BL6NJ_P0066078 Tbc1d2 protein_coding protein_coding MGP_C57BL6NJ_T0014791.1 MGP_C57BL6NJ_G0012836.1 mouse_genomes_project 4 16969329 16970181 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014780.1 MGP_C57BL6NJ_G0012825.1 mouse_genomes_project 4 14179582 14180241 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067441.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116793167 116824723 - MGP_C57BL6NJ_P0067441 Slc5a9 protein_coding protein_coding MGP_C57BL6NJ_T0067442.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116793221 116804421 - Slc5a9 protein_coding processed_transcript MGP_C57BL6NJ_T0067443.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116794065 116820658 - MGP_C57BL6NJ_P0067443 Slc5a9 protein_coding protein_coding MGP_C57BL6NJ_T0067444.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116795038 116824723 - MGP_C57BL6NJ_P0067444 Slc5a9 protein_coding protein_coding MGP_C57BL6NJ_T0067445.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116795283 116798420 - Slc5a9 protein_coding processed_transcript MGP_C57BL6NJ_T0067446.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116812084 116818269 - MGP_C57BL6NJ_P0067446 Slc5a9 protein_coding protein_coding MGP_C57BL6NJ_T0067447.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116812413 116813913 - Slc5a9 protein_coding processed_transcript MGP_C57BL6NJ_T0067448.1 MGP_C57BL6NJ_G0029002.1 mouse_genomes_project 4 116812452 116813178 - Slc5a9 protein_coding processed_transcript MGP_C57BL6NJ_T0069191.1 MGP_C57BL6NJ_G0029401.1 mouse_genomes_project 4 144551389 144621166 - MGP_C57BL6NJ_P0069191 Zbtb40 protein_coding protein_coding MGP_C57BL6NJ_T0069192.1 MGP_C57BL6NJ_G0029401.1 mouse_genomes_project 4 144554707 144621260 - MGP_C57BL6NJ_P0069192 Zbtb40 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069193.1 MGP_C57BL6NJ_G0029401.1 mouse_genomes_project 4 144586518 144621272 - Zbtb40 protein_coding retained_intron MGP_C57BL6NJ_T0014921.1 MGP_C57BL6NJ_G0012966.1 mouse_genomes_project 4 55895331 55895811 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004668.1 MGP_C57BL6NJ_G0004050.1 mouse_genomes_project 4 120042340 120134178 - 9130410C08Rik antisense antisense MGP_C57BL6NJ_T0068869.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141040767 141089768 - MGP_C57BL6NJ_P0068869 Rps6ka1 protein_coding protein_coding MGP_C57BL6NJ_T0068870.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141040776 141089920 - MGP_C57BL6NJ_P0068870 Rps6ka1 protein_coding protein_coding MGP_C57BL6NJ_T0068871.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141040776 141074531 - MGP_C57BL6NJ_P0068871 Rps6ka1 protein_coding protein_coding MGP_C57BL6NJ_T0068872.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141041307 141072118 - MGP_C57BL6NJ_P0068872 Rps6ka1 protein_coding protein_coding MGP_C57BL6NJ_T0068873.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141041534 141072839 - MGP_C57BL6NJ_P0068873 Rps6ka1 protein_coding protein_coding MGP_C57BL6NJ_T0068874.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141044039 141060735 - Rps6ka1 protein_coding retained_intron MGP_C57BL6NJ_T0068875.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141059969 141060847 - Rps6ka1 protein_coding retained_intron MGP_C57BL6NJ_T0068876.1 MGP_C57BL6NJ_G0029329.1 mouse_genomes_project 4 141071768 141089710 - Rps6ka1 protein_coding processed_transcript MGP_C57BL6NJ_T0014915.1 MGP_C57BL6NJ_G0012960.1 mouse_genomes_project 4 54842216 54842423 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014981.1 MGP_C57BL6NJ_G0013026.1 mouse_genomes_project 4 82489884 82490287 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067285.1 MGP_C57BL6NJ_G0028975.1 mouse_genomes_project 4 113012312 113031060 - MGP_C57BL6NJ_P0067285 Fam159a protein_coding protein_coding MGP_C57BL6NJ_T0068615.1 MGP_C57BL6NJ_G0029272.1 mouse_genomes_project 4 137260265 137260778 - MGP_C57BL6NJ_P0068615 Gm10570 protein_coding protein_coding MGP_C57BL6NJ_T0101673.1 MGP_C57BL6NJ_G0039719.1 mouse_genomes_project 4 67900121 67900254 + Gm25480 snoRNA snoRNA MGP_C57BL6NJ_T0101683.1 MGP_C57BL6NJ_G0039729.1 mouse_genomes_project 4 92506980 92507120 - Gm26490 snoRNA snoRNA MGP_C57BL6NJ_T0068365.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135341609 135348033 - Zscan20 protein_coding processed_transcript MGP_C57BL6NJ_T0068366.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135341617 135373568 - MGP_C57BL6NJ_P0068366 Zscan20 protein_coding protein_coding MGP_C57BL6NJ_T0068367.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135343445 135373512 - MGP_C57BL6NJ_P0068367 Zscan20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068368.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135363041 135373504 - Zscan20 protein_coding retained_intron MGP_C57BL6NJ_T0068369.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135366096 135373465 - MGP_C57BL6NJ_P0068369 Zscan20 protein_coding protein_coding MGP_C57BL6NJ_T0068370.1 MGP_C57BL6NJ_G0029227.1 mouse_genomes_project 4 135366130 135373451 - MGP_C57BL6NJ_P0068370 Zscan20 protein_coding protein_coding MGP_C57BL6NJ_T0008131.1 MGP_C57BL6NJ_G0006641.1 mouse_genomes_project 4 134216887 134218151 + 1700080G11Rik lincRNA lincRNA MGP_C57BL6NJ_T0100329.1 MGP_C57BL6NJ_G0038375.1 mouse_genomes_project 4 6661963 6662126 - Gm24152 snRNA snRNA MGP_C57BL6NJ_T0008129.1 MGP_C57BL6NJ_G0006640.1 mouse_genomes_project 4 134159305 134161298 + 4930471C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008130.1 MGP_C57BL6NJ_G0006640.1 mouse_genomes_project 4 134159391 134161298 + 4930471C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0066608.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288465 86341034 + MGP_C57BL6NJ_P0066608 Snapc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066609.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288465 86321251 + MGP_C57BL6NJ_P0066609 Snapc3 protein_coding protein_coding MGP_C57BL6NJ_T0066610.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288472 86312807 + MGP_C57BL6NJ_P0066610 Snapc3 protein_coding protein_coding MGP_C57BL6NJ_T0066611.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288485 86321944 + MGP_C57BL6NJ_P0066611 Snapc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066612.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288485 86346342 + MGP_C57BL6NJ_P0066612 Snapc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066613.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86288490 86346800 + MGP_C57BL6NJ_P0066613 Snapc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066614.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86321716 86346289 + Snapc3 protein_coding processed_transcript MGP_C57BL6NJ_T0066615.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86321864 86345250 + Snapc3 protein_coding processed_transcript MGP_C57BL6NJ_T0066622.1 MGP_C57BL6NJ_G0028823.1 mouse_genomes_project 4 86343163 86346334 + Snapc3 protein_coding retained_intron MGP_C57BL6NJ_T0066688.1 MGP_C57BL6NJ_G0028834.1 mouse_genomes_project 4 89832597 89959560 + MGP_C57BL6NJ_P0066688 Dennd4c protein_coding protein_coding MGP_C57BL6NJ_T0066689.1 MGP_C57BL6NJ_G0028834.1 mouse_genomes_project 4 89832597 89928579 + MGP_C57BL6NJ_P0066689 Dennd4c protein_coding protein_coding MGP_C57BL6NJ_T0066690.1 MGP_C57BL6NJ_G0028834.1 mouse_genomes_project 4 89863298 89967080 + MGP_C57BL6NJ_P0066690 Dennd4c protein_coding protein_coding MGP_C57BL6NJ_T0066691.1 MGP_C57BL6NJ_G0028834.1 mouse_genomes_project 4 89866886 89872253 + Dennd4c protein_coding processed_transcript MGP_C57BL6NJ_T0068051.1 MGP_C57BL6NJ_G0029144.1 mouse_genomes_project 4 126967760 127011785 - MGP_C57BL6NJ_P0068051 Zmpste24 protein_coding protein_coding MGP_C57BL6NJ_T0068052.1 MGP_C57BL6NJ_G0029144.1 mouse_genomes_project 4 126978630 126991350 - Zmpste24 protein_coding processed_transcript MGP_C57BL6NJ_T0068053.1 MGP_C57BL6NJ_G0029144.1 mouse_genomes_project 4 126996488 127009242 - MGP_C57BL6NJ_P0068053 Zmpste24 protein_coding protein_coding MGP_C57BL6NJ_T0015056.1 MGP_C57BL6NJ_G0013101.1 mouse_genomes_project 4 110626587 110628255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100405.1 MGP_C57BL6NJ_G0038451.1 mouse_genomes_project 4 144905816 144905872 + Gm25772 snRNA snRNA MGP_C57BL6NJ_T0069114.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143379060 143393810 - MGP_C57BL6NJ_P0069114 Pithd1 protein_coding protein_coding MGP_C57BL6NJ_T0069115.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143379666 143392484 - Pithd1 protein_coding processed_transcript MGP_C57BL6NJ_T0069116.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143379994 143384963 - Pithd1 protein_coding retained_intron MGP_C57BL6NJ_T0069117.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143379996 143392868 - MGP_C57BL6NJ_P0069117 Pithd1 protein_coding protein_coding MGP_C57BL6NJ_T0069118.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143380807 143393463 - MGP_C57BL6NJ_P0069118 Pithd1 protein_coding protein_coding MGP_C57BL6NJ_T0069119.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143384390 143393627 - Pithd1 protein_coding retained_intron MGP_C57BL6NJ_T0069120.1 MGP_C57BL6NJ_G0029381.1 mouse_genomes_project 4 143392959 143393633 - Pithd1 protein_coding processed_transcript MGP_C57BL6NJ_T0069560.1 MGP_C57BL6NJ_G0029488.1 mouse_genomes_project 4 150177964 150240027 - MGP_C57BL6NJ_P0069560 Tmem51 protein_coding protein_coding MGP_C57BL6NJ_T0014890.1 MGP_C57BL6NJ_G0012935.1 mouse_genomes_project 4 48817837 48818202 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069378.1 MGP_C57BL6NJ_G0029443.1 mouse_genomes_project 4 147463955 147519950 + MGP_C57BL6NJ_P0069378 Iffo2 protein_coding protein_coding MGP_C57BL6NJ_T0069379.1 MGP_C57BL6NJ_G0029443.1 mouse_genomes_project 4 147464183 147519954 + MGP_C57BL6NJ_P0069379 Iffo2 protein_coding protein_coding MGP_C57BL6NJ_T0015097.1 MGP_C57BL6NJ_G0013142.1 mouse_genomes_project 4 122668440 122668644 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015224.1 MGP_C57BL6NJ_G0013269.1 mouse_genomes_project 4 163949348 163949454 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014983.1 MGP_C57BL6NJ_G0013028.1 mouse_genomes_project 4 82625943 82626462 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068302.1 MGP_C57BL6NJ_G0029210.1 mouse_genomes_project 4 133313865 133335211 - MGP_C57BL6NJ_P0068302 Tfap2e protein_coding protein_coding MGP_C57BL6NJ_T0014772.1 MGP_C57BL6NJ_G0012817.1 mouse_genomes_project 4 12931838 12932293 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015168.1 MGP_C57BL6NJ_G0013213.1 mouse_genomes_project 4 144127295 144127784 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004609.1 MGP_C57BL6NJ_G0004009.1 mouse_genomes_project 4 44815673 44823733 - Gm12679 antisense antisense MGP_C57BL6NJ_T0010830.1 MGP_C57BL6NJ_G0008915.1 mouse_genomes_project 4 43997918 43997991 - Mir5106 miRNA miRNA MGP_C57BL6NJ_T0065306.1 MGP_C57BL6NJ_G0028509.1 mouse_genomes_project 4 20313378 20318951 - MGP_C57BL6NJ_P0065306 Pou3f2 protein_coding protein_coding MGP_C57BL6NJ_T0067106.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111189694 111238118 - MGP_C57BL6NJ_P0067106 Mroh7 protein_coding protein_coding MGP_C57BL6NJ_T0067107.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111189701 111218992 - Mroh7 protein_coding processed_transcript MGP_C57BL6NJ_T0067108.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111189701 111217509 - Mroh7 protein_coding retained_intron MGP_C57BL6NJ_T0067109.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111189914 111218676 - Mroh7 protein_coding processed_transcript MGP_C57BL6NJ_T0067110.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111200827 111208941 - Mroh7 protein_coding processed_transcript MGP_C57BL6NJ_T0067111.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111217450 111238164 - MGP_C57BL6NJ_P0067111 Mroh7 protein_coding protein_coding MGP_C57BL6NJ_T0067112.1 MGP_C57BL6NJ_G0028947.1 mouse_genomes_project 4 111230058 111242798 - MGP_C57BL6NJ_P0067112 Mroh7 protein_coding protein_coding MGP_C57BL6NJ_T0070168.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164945448 164962168 + MGP_C57BL6NJ_P0070168 Pank4 protein_coding protein_coding MGP_C57BL6NJ_T0070169.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164945458 164962235 + MGP_C57BL6NJ_P0070169 Pank4 protein_coding protein_coding MGP_C57BL6NJ_T0070170.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164951313 164962186 + MGP_C57BL6NJ_P0070170 Pank4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070171.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164955847 164962235 + Pank4 protein_coding retained_intron MGP_C57BL6NJ_T0070172.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164957567 164960451 + Pank4 protein_coding retained_intron MGP_C57BL6NJ_T0070173.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164957575 164960521 + Pank4 protein_coding retained_intron MGP_C57BL6NJ_T0070174.1 MGP_C57BL6NJ_G0029634.1 mouse_genomes_project 4 164957874 164962231 + Pank4 protein_coding retained_intron MGP_C57BL6NJ_T0065579.1 MGP_C57BL6NJ_G0028575.1 mouse_genomes_project 4 40928589 40987084 - MGP_C57BL6NJ_P0065579 Fam219a protein_coding protein_coding MGP_C57BL6NJ_T0065580.1 MGP_C57BL6NJ_G0028575.1 mouse_genomes_project 4 40928589 40987112 - MGP_C57BL6NJ_P0065580 Fam219a protein_coding protein_coding MGP_C57BL6NJ_T0065581.1 MGP_C57BL6NJ_G0028575.1 mouse_genomes_project 4 40928589 40987112 - MGP_C57BL6NJ_P0065581 Fam219a protein_coding protein_coding MGP_C57BL6NJ_T0065582.1 MGP_C57BL6NJ_G0028575.1 mouse_genomes_project 4 40931187 40935638 - Fam219a protein_coding processed_transcript MGP_C57BL6NJ_T0065583.1 MGP_C57BL6NJ_G0028575.1 mouse_genomes_project 4 40934983 40987113 - Fam219a protein_coding processed_transcript MGP_C57BL6NJ_T0008170.1 MGP_C57BL6NJ_G0006667.1 mouse_genomes_project 4 143005241 143008785 + 1700029M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0008171.1 MGP_C57BL6NJ_G0006667.1 mouse_genomes_project 4 143005360 143007072 + 1700029M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0008172.1 MGP_C57BL6NJ_G0006667.1 mouse_genomes_project 4 143005404 143007072 + 1700029M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0008173.1 MGP_C57BL6NJ_G0006667.1 mouse_genomes_project 4 143005839 143006572 + 1700029M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0069138.1 MGP_C57BL6NJ_G0029387.1 mouse_genomes_project 4 143708682 143736073 + Tcea3 protein_coding processed_transcript MGP_C57BL6NJ_T0069139.1 MGP_C57BL6NJ_G0029387.1 mouse_genomes_project 4 143708905 143739715 + MGP_C57BL6NJ_P0069139 Tcea3 protein_coding protein_coding MGP_C57BL6NJ_T0069140.1 MGP_C57BL6NJ_G0029387.1 mouse_genomes_project 4 143708926 143729269 + MGP_C57BL6NJ_P0069140 Tcea3 protein_coding protein_coding MGP_C57BL6NJ_T0004635.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98757928 98777012 + Junos antisense antisense MGP_C57BL6NJ_T0004636.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98759380 98769216 + Junos antisense antisense MGP_C57BL6NJ_T0004637.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98759669 98874768 + Junos antisense antisense MGP_C57BL6NJ_T0004638.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98785493 98871957 + Junos antisense antisense MGP_C57BL6NJ_T0004639.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98785640 98850235 + Junos antisense antisense MGP_C57BL6NJ_T0004640.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98803314 98879054 + Junos antisense antisense MGP_C57BL6NJ_T0004641.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98808466 98883721 + Junos antisense antisense MGP_C57BL6NJ_T0004642.1 MGP_C57BL6NJ_G0004032.1 mouse_genomes_project 4 98836444 98885140 + Junos antisense antisense MGP_C57BL6NJ_T0066346.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60415053 60492268 - MGP_C57BL6NJ_P0066346 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0066347.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60415230 60493019 - MGP_C57BL6NJ_P0066347 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0066348.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60418441 60493008 - MGP_C57BL6NJ_P0066348 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0066349.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60420117 60427861 - Ptbp3 protein_coding retained_intron MGP_C57BL6NJ_T0066350.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60423794 60436761 - MGP_C57BL6NJ_P0066350 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0066351.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60423799 60492976 - MGP_C57BL6NJ_P0066351 Ptbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066352.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60436664 60492981 - MGP_C57BL6NJ_P0066352 Ptbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066353.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60436714 60492989 - MGP_C57BL6NJ_P0066353 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0066354.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60444271 60458498 - Ptbp3 protein_coding retained_intron MGP_C57BL6NJ_T0066355.1 MGP_C57BL6NJ_G0028757.1 mouse_genomes_project 4 60461203 60492461 - MGP_C57BL6NJ_P0066355 Ptbp3 protein_coding protein_coding MGP_C57BL6NJ_T0068699.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139193458 139231739 - MGP_C57BL6NJ_P0068699 Gmeb1 protein_coding protein_coding MGP_C57BL6NJ_T0068700.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139195365 139242992 - MGP_C57BL6NJ_P0068700 Gmeb1 protein_coding protein_coding MGP_C57BL6NJ_T0068701.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139197438 139231097 - MGP_C57BL6NJ_P0068701 Gmeb1 protein_coding protein_coding MGP_C57BL6NJ_T0068702.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139198090 139243073 - MGP_C57BL6NJ_P0068702 Gmeb1 protein_coding protein_coding MGP_C57BL6NJ_T0068703.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139206456 139210675 - Gmeb1 protein_coding retained_intron MGP_C57BL6NJ_T0068704.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139212461 139225340 - Gmeb1 protein_coding retained_intron MGP_C57BL6NJ_T0068705.1 MGP_C57BL6NJ_G0029289.1 mouse_genomes_project 4 139231008 139233497 - Gmeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0010885.1 MGP_C57BL6NJ_G0008970.1 mouse_genomes_project 4 146068285 146068395 - Gm27646 miRNA miRNA MGP_C57BL6NJ_T0008207.1 MGP_C57BL6NJ_G0006700.1 mouse_genomes_project 4 163799379 163800660 + Gm13115 lincRNA lincRNA MGP_C57BL6NJ_T0069561.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150264518 150385965 - MGP_C57BL6NJ_P0069561 protein_coding protein_coding MGP_C57BL6NJ_T0069562.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150274318 150280247 - protein_coding processed_transcript MGP_C57BL6NJ_T0069563.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150280368 150328477 - MGP_C57BL6NJ_P0069563 protein_coding protein_coding MGP_C57BL6NJ_T0069564.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150306365 150416242 - MGP_C57BL6NJ_P0069564 protein_coding protein_coding MGP_C57BL6NJ_T0069565.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150306372 150385867 - MGP_C57BL6NJ_P0069565 protein_coding protein_coding MGP_C57BL6NJ_T0069566.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150306373 150313595 - protein_coding retained_intron MGP_C57BL6NJ_T0069567.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150308670 150385965 - MGP_C57BL6NJ_P0069567 protein_coding protein_coding MGP_C57BL6NJ_T0069568.1 MGP_C57BL6NJ_G0029489.1 mouse_genomes_project 4 150313899 150324017 - protein_coding retained_intron MGP_C57BL6NJ_T0068483.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136426403 136435993 - MGP_C57BL6NJ_P0068483 Lck protein_coding protein_coding MGP_C57BL6NJ_T0068484.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136426408 136436012 - MGP_C57BL6NJ_P0068484 Lck protein_coding protein_coding MGP_C57BL6NJ_T0068485.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136426408 136451032 - MGP_C57BL6NJ_P0068485 Lck protein_coding protein_coding MGP_C57BL6NJ_T0068486.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136426954 136433474 - Lck protein_coding retained_intron MGP_C57BL6NJ_T0068487.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136429996 136433857 - Lck protein_coding retained_intron MGP_C57BL6NJ_T0068488.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136433101 136434085 - Lck protein_coding retained_intron MGP_C57BL6NJ_T0068489.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136434483 136435708 - Lck protein_coding retained_intron MGP_C57BL6NJ_T0068490.1 MGP_C57BL6NJ_G0029252.1 mouse_genomes_project 4 136434985 136435993 - MGP_C57BL6NJ_P0068490 Lck protein_coding protein_coding MGP_C57BL6NJ_T0101679.1 MGP_C57BL6NJ_G0039725.1 mouse_genomes_project 4 77504752 77504882 - Gm22864 snoRNA snoRNA MGP_C57BL6NJ_T0069537.1 MGP_C57BL6NJ_G0029483.1 mouse_genomes_project 4 149936635 149941109 + Casp9 protein_coding processed_transcript MGP_C57BL6NJ_T0069538.1 MGP_C57BL6NJ_G0029483.1 mouse_genomes_project 4 149936733 149947586 + MGP_C57BL6NJ_P0069538 Casp9 protein_coding protein_coding MGP_C57BL6NJ_T0069539.1 MGP_C57BL6NJ_G0029483.1 mouse_genomes_project 4 149936845 149958091 + MGP_C57BL6NJ_P0069539 Casp9 protein_coding protein_coding MGP_C57BL6NJ_T0069540.1 MGP_C57BL6NJ_G0029483.1 mouse_genomes_project 4 149936867 149939597 + Casp9 protein_coding processed_transcript MGP_C57BL6NJ_T0069541.1 MGP_C57BL6NJ_G0029483.1 mouse_genomes_project 4 149956901 149958120 + Casp9 protein_coding processed_transcript MGP_C57BL6NJ_T0014796.1 MGP_C57BL6NJ_G0012841.1 mouse_genomes_project 4 19449492 19449761 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015048.1 MGP_C57BL6NJ_G0013093.1 mouse_genomes_project 4 108293731 108293972 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004754.1 MGP_C57BL6NJ_G0004118.1 mouse_genomes_project 4 158697988 158699247 + Ube4bos3 antisense antisense MGP_C57BL6NJ_T0068060.1 MGP_C57BL6NJ_G0029149.1 mouse_genomes_project 4 127546349 127554469 - MGP_C57BL6NJ_P0068060 Gm12887 protein_coding protein_coding MGP_C57BL6NJ_T0066749.1 MGP_C57BL6NJ_G0028858.1 mouse_genomes_project 4 92159865 92160363 - MGP_C57BL6NJ_P0066749 4930553M12Rik protein_coding protein_coding MGP_C57BL6NJ_T0067629.1 MGP_C57BL6NJ_G0029049.1 mouse_genomes_project 4 121993703 121999364 - MGP_C57BL6NJ_P0067629 Tmem69 protein_coding protein_coding MGP_C57BL6NJ_T0067630.1 MGP_C57BL6NJ_G0029049.1 mouse_genomes_project 4 121993975 121996543 - Tmem69 protein_coding processed_transcript MGP_C57BL6NJ_T0067631.1 MGP_C57BL6NJ_G0029049.1 mouse_genomes_project 4 121996382 121999363 - MGP_C57BL6NJ_P0067631 Tmem69 protein_coding protein_coding MGP_C57BL6NJ_T0066984.1 MGP_C57BL6NJ_G0028917.1 mouse_genomes_project 4 106069436 106077312 - MGP_C57BL6NJ_P0066984 C130073F10Rik protein_coding protein_coding MGP_C57BL6NJ_T0068272.1 MGP_C57BL6NJ_G0029203.1 mouse_genomes_project 4 132888142 132891710 - MGP_C57BL6NJ_P0068272 Tekt2 protein_coding protein_coding MGP_C57BL6NJ_T0068273.1 MGP_C57BL6NJ_G0029203.1 mouse_genomes_project 4 132888144 132891221 - MGP_C57BL6NJ_P0068273 Tekt2 protein_coding protein_coding MGP_C57BL6NJ_T0068274.1 MGP_C57BL6NJ_G0029203.1 mouse_genomes_project 4 132889729 132891652 - Tekt2 protein_coding retained_intron MGP_C57BL6NJ_T0068275.1 MGP_C57BL6NJ_G0029203.1 mouse_genomes_project 4 132890361 132891665 - MGP_C57BL6NJ_P0068275 Tekt2 protein_coding protein_coding MGP_C57BL6NJ_T0068276.1 MGP_C57BL6NJ_G0029203.1 mouse_genomes_project 4 132890905 132891457 - MGP_C57BL6NJ_P0068276 Tekt2 protein_coding protein_coding MGP_C57BL6NJ_T0069337.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147038253 147134717 + MGP_C57BL6NJ_P0069337 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069338.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147038255 147146388 + MGP_C57BL6NJ_P0069338 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069339.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147038270 147093162 + Capzb protein_coding retained_intron MGP_C57BL6NJ_T0069340.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147038300 147146444 + Capzb protein_coding processed_transcript MGP_C57BL6NJ_T0069341.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147038357 147145720 + MGP_C57BL6NJ_P0069341 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069342.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147039327 147146070 + MGP_C57BL6NJ_P0069342 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069343.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147039442 147093422 + Capzb protein_coding retained_intron MGP_C57BL6NJ_T0069344.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147044598 147116725 + MGP_C57BL6NJ_P0069344 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069345.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147078645 147141719 + MGP_C57BL6NJ_P0069345 Capzb protein_coding protein_coding MGP_C57BL6NJ_T0069346.1 MGP_C57BL6NJ_G0029437.1 mouse_genomes_project 4 147143575 147144445 + Capzb protein_coding processed_transcript MGP_C57BL6NJ_T0066785.1 MGP_C57BL6NJ_G0028871.1 mouse_genomes_project 4 98284125 98341641 + MGP_C57BL6NJ_P0066785 Ift74 protein_coding protein_coding MGP_C57BL6NJ_T0066786.1 MGP_C57BL6NJ_G0028871.1 mouse_genomes_project 4 98284125 98373227 + MGP_C57BL6NJ_P0066786 Ift74 protein_coding protein_coding MGP_C57BL6NJ_T0066789.1 MGP_C57BL6NJ_G0028871.1 mouse_genomes_project 4 98356972 98365884 + Ift74 protein_coding processed_transcript MGP_C57BL6NJ_T0065161.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8640364 8677308 + Rad54b protein_coding processed_transcript MGP_C57BL6NJ_T0065162.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8640384 8669184 + MGP_C57BL6NJ_P0065162 Rad54b protein_coding protein_coding MGP_C57BL6NJ_T0065163.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8640391 8662312 + MGP_C57BL6NJ_P0065163 Rad54b protein_coding protein_coding MGP_C57BL6NJ_T0065164.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8640414 8700810 + MGP_C57BL6NJ_P0065164 Rad54b protein_coding protein_coding MGP_C57BL6NJ_T0065165.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8659997 8679446 + Rad54b protein_coding processed_transcript MGP_C57BL6NJ_T0065167.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8679545 8691024 + MGP_C57BL6NJ_P0065167 Rad54b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065168.1 MGP_C57BL6NJ_G0028466.1 mouse_genomes_project 4 8694254 8695661 + Rad54b protein_coding retained_intron MGP_C57BL6NJ_T0010829.1 MGP_C57BL6NJ_G0008914.1 mouse_genomes_project 4 43325391 43325524 + Gm25262 miRNA miRNA MGP_C57BL6NJ_T0014941.1 MGP_C57BL6NJ_G0012986.1 mouse_genomes_project 4 66097162 66098376 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067318.1 MGP_C57BL6NJ_G0028982.1 mouse_genomes_project 4 113392880 113457284 + MGP_C57BL6NJ_P0067318 3110021N24Rik protein_coding protein_coding MGP_C57BL6NJ_T0068839.1 MGP_C57BL6NJ_G0029319.1 mouse_genomes_project 4 140624981 140632904 - MGP_C57BL6NJ_P0068839 Trnp1 protein_coding protein_coding MGP_C57BL6NJ_T0068840.1 MGP_C57BL6NJ_G0029319.1 mouse_genomes_project 4 140624999 140632073 - Trnp1 protein_coding processed_transcript MGP_C57BL6NJ_T0004693.1 MGP_C57BL6NJ_G0004071.1 mouse_genomes_project 4 131315871 131319766 - 1700125G02Rik antisense antisense MGP_C57BL6NJ_T0069830.1 MGP_C57BL6NJ_G0029572.1 mouse_genomes_project 4 158902559 158964947 + MGP_C57BL6NJ_P0069830 Ctnnbip1 protein_coding protein_coding MGP_C57BL6NJ_T0069831.1 MGP_C57BL6NJ_G0029572.1 mouse_genomes_project 4 158942282 158963018 + MGP_C57BL6NJ_P0069831 Ctnnbip1 protein_coding protein_coding MGP_C57BL6NJ_T0014817.1 MGP_C57BL6NJ_G0012862.1 mouse_genomes_project 4 24763270 24763948 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014832.1 MGP_C57BL6NJ_G0012877.1 mouse_genomes_project 4 28689474 28690009 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067064.1 MGP_C57BL6NJ_G0028932.1 mouse_genomes_project 4 109168819 109212858 + MGP_C57BL6NJ_P0067064 C8b protein_coding protein_coding MGP_C57BL6NJ_T0067065.1 MGP_C57BL6NJ_G0028932.1 mouse_genomes_project 4 109168897 109212481 + MGP_C57BL6NJ_P0067065 C8b protein_coding protein_coding MGP_C57BL6NJ_T0067066.1 MGP_C57BL6NJ_G0028932.1 mouse_genomes_project 4 109207473 109212850 + C8b protein_coding processed_transcript MGP_C57BL6NJ_T0015147.1 MGP_C57BL6NJ_G0013192.1 mouse_genomes_project 4 139035772 139036180 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069639.1 MGP_C57BL6NJ_G0029530.1 mouse_genomes_project 4 153636506 153684893 - MGP_C57BL6NJ_P0069639 Tnfrsf8 protein_coding protein_coding MGP_C57BL6NJ_T0069640.1 MGP_C57BL6NJ_G0029530.1 mouse_genomes_project 4 153636508 153684910 - MGP_C57BL6NJ_P0069640 Tnfrsf8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010904.1 MGP_C57BL6NJ_G0008989.1 mouse_genomes_project 4 166305696 166305753 - Mir7658 miRNA miRNA MGP_C57BL6NJ_T0100346.1 MGP_C57BL6NJ_G0038392.1 mouse_genomes_project 4 40740300 40740404 - Gm26084 snRNA snRNA MGP_C57BL6NJ_T0008115.1 MGP_C57BL6NJ_G0006634.1 mouse_genomes_project 4 130667787 130676412 - 1700021L23Rik lincRNA lincRNA MGP_C57BL6NJ_T0014989.1 MGP_C57BL6NJ_G0013034.1 mouse_genomes_project 4 85971390 85971591 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015052.1 MGP_C57BL6NJ_G0013097.1 mouse_genomes_project 4 109964574 109965025 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014814.1 MGP_C57BL6NJ_G0012859.1 mouse_genomes_project 4 23999805 24000272 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001557.1 MGP_C57BL6NJ_G0001457.1 mouse_genomes_project 4 139048837 139058163 - TEC TEC MGP_C57BL6NJ_T0068994.1 MGP_C57BL6NJ_G0029353.1 mouse_genomes_project 4 141809473 141822214 + MGP_C57BL6NJ_P0068994 Aunip protein_coding protein_coding MGP_C57BL6NJ_T0067967.1 MGP_C57BL6NJ_G0029122.1 mouse_genomes_project 4 125191579 125195408 - Ppcs protein_coding retained_intron MGP_C57BL6NJ_T0067968.1 MGP_C57BL6NJ_G0029122.1 mouse_genomes_project 4 125191579 125195470 - MGP_C57BL6NJ_P0067968 Ppcs protein_coding protein_coding MGP_C57BL6NJ_T0067969.1 MGP_C57BL6NJ_G0029122.1 mouse_genomes_project 4 125191579 125195426 - MGP_C57BL6NJ_P0067969 Ppcs protein_coding protein_coding MGP_C57BL6NJ_T0065341.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27176081 27341726 + MGP_C57BL6NJ_P0065341 Epha7 protein_coding protein_coding MGP_C57BL6NJ_T0065342.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27176081 27321298 + MGP_C57BL6NJ_P0065342 Epha7 protein_coding protein_coding MGP_C57BL6NJ_T0065343.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27176102 27341042 + MGP_C57BL6NJ_P0065343 Epha7 protein_coding protein_coding MGP_C57BL6NJ_T0065344.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27176200 27341726 + MGP_C57BL6NJ_P0065344 Epha7 protein_coding protein_coding MGP_C57BL6NJ_T0065345.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27176276 27238120 + Epha7 protein_coding processed_transcript MGP_C57BL6NJ_T0065346.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27178379 27185601 + Epha7 protein_coding processed_transcript MGP_C57BL6NJ_T0065347.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27236159 27317751 + Epha7 protein_coding processed_transcript MGP_C57BL6NJ_T0065348.1 MGP_C57BL6NJ_G0028518.1 mouse_genomes_project 4 27236242 27320585 + Epha7 protein_coding processed_transcript MGP_C57BL6NJ_T0011845.1 MGP_C57BL6NJ_G0009930.1 mouse_genomes_project 4 129759504 129759610 + Gm23548 misc_RNA misc_RNA MGP_C57BL6NJ_T0008001.1 MGP_C57BL6NJ_G0006540.1 mouse_genomes_project 4 36316109 36404163 + Gm12374 lincRNA lincRNA MGP_C57BL6NJ_T0004719.1 MGP_C57BL6NJ_G0004093.1 mouse_genomes_project 4 145562211 145563254 - Gm13012 antisense antisense MGP_C57BL6NJ_T0004720.1 MGP_C57BL6NJ_G0004093.1 mouse_genomes_project 4 145562211 145563779 - Gm13012 antisense antisense MGP_C57BL6NJ_T0004721.1 MGP_C57BL6NJ_G0004093.1 mouse_genomes_project 4 145562211 145563768 - Gm13012 antisense antisense MGP_C57BL6NJ_T0101657.1 MGP_C57BL6NJ_G0039703.1 mouse_genomes_project 4 48007788 48007931 + Gm22670 snoRNA snoRNA MGP_C57BL6NJ_T0008087.1 MGP_C57BL6NJ_G0006612.1 mouse_genomes_project 4 107619909 107641380 + 4930456L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0066184.1 MGP_C57BL6NJ_G0028712.1 mouse_genomes_project 4 53081804 53099242 + MGP_C57BL6NJ_P0066184 Toporsl protein_coding protein_coding MGP_C57BL6NJ_T0066185.1 MGP_C57BL6NJ_G0028712.1 mouse_genomes_project 4 53094019 53099239 + MGP_C57BL6NJ_P0066185 Toporsl protein_coding protein_coding MGP_C57BL6NJ_T0068808.1 MGP_C57BL6NJ_G0029311.1 mouse_genomes_project 4 140314700 140317218 - MGP_C57BL6NJ_P0068808 Gpr3 protein_coding protein_coding MGP_C57BL6NJ_T0068809.1 MGP_C57BL6NJ_G0029311.1 mouse_genomes_project 4 140315727 140317897 - MGP_C57BL6NJ_P0068809 Gpr3 protein_coding protein_coding MGP_C57BL6NJ_T0068810.1 MGP_C57BL6NJ_G0029311.1 mouse_genomes_project 4 140316430 140317674 - MGP_C57BL6NJ_P0068810 Gpr3 protein_coding protein_coding MGP_C57BL6NJ_T0014880.1 MGP_C57BL6NJ_G0012925.1 mouse_genomes_project 4 45208375 45208665 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014769.1 MGP_C57BL6NJ_G0012814.1 mouse_genomes_project 4 12068547 12068778 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014911.1 MGP_C57BL6NJ_G0012956.1 mouse_genomes_project 4 53850087 53850534 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103181.1 MGP_C57BL6NJ_G0040975.1 mouse_genomes_project 4 154051558 156444270 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0068557.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136722972 136752601 + Ptp4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0068558.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136722975 136724275 + Ptp4a2 protein_coding retained_intron MGP_C57BL6NJ_T0068559.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136731797 136763349 + MGP_C57BL6NJ_P0068559 Ptp4a2 protein_coding protein_coding MGP_C57BL6NJ_T0068560.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136732333 136752565 + Ptp4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0068561.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136732361 136763374 + MGP_C57BL6NJ_P0068561 Ptp4a2 protein_coding protein_coding MGP_C57BL6NJ_T0068562.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136732374 136752735 + Ptp4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0068563.1 MGP_C57BL6NJ_G0029263.1 mouse_genomes_project 4 136751580 136759872 + Ptp4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0004606.1 MGP_C57BL6NJ_G0004006.1 mouse_genomes_project 4 43468621 43473758 + antisense antisense MGP_C57BL6NJ_T0070216.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165262014 165369928 - MGP_C57BL6NJ_P0070216 Prkcz protein_coding protein_coding MGP_C57BL6NJ_T0070217.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165264000 165270236 - Prkcz protein_coding processed_transcript MGP_C57BL6NJ_T0070218.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165273033 165274943 - Prkcz protein_coding processed_transcript MGP_C57BL6NJ_T0070219.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165294762 165353148 - MGP_C57BL6NJ_P0070219 Prkcz protein_coding protein_coding MGP_C57BL6NJ_T0070220.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165294762 165352931 - MGP_C57BL6NJ_P0070220 Prkcz protein_coding protein_coding MGP_C57BL6NJ_T0070221.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165294765 165353028 - Prkcz protein_coding processed_transcript MGP_C57BL6NJ_T0070222.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165298537 165305431 - Prkcz protein_coding processed_transcript MGP_C57BL6NJ_T0070223.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165298612 165352506 - Prkcz protein_coding processed_transcript MGP_C57BL6NJ_T0070224.1 MGP_C57BL6NJ_G0029641.1 mouse_genomes_project 4 165363814 165370046 - MGP_C57BL6NJ_P0070224 Prkcz protein_coding protein_coding MGP_C57BL6NJ_T0014934.1 MGP_C57BL6NJ_G0012979.1 mouse_genomes_project 4 60086387 60087276 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014821.1 MGP_C57BL6NJ_G0012866.1 mouse_genomes_project 4 26306211 26306534 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015180.1 MGP_C57BL6NJ_G0013225.1 mouse_genomes_project 4 151644633 151645391 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070364.1 MGP_C57BL6NJ_G0029669.1 mouse_genomes_project 4 165990723 165995971 + MGP_C57BL6NJ_P0070364 Ube2j2 protein_coding protein_coding MGP_C57BL6NJ_T0070365.1 MGP_C57BL6NJ_G0029669.1 mouse_genomes_project 4 165990726 165998374 + Ube2j2 protein_coding processed_transcript MGP_C57BL6NJ_T0070366.1 MGP_C57BL6NJ_G0029669.1 mouse_genomes_project 4 165990862 165998541 + Ube2j2 protein_coding retained_intron MGP_C57BL6NJ_T0070367.1 MGP_C57BL6NJ_G0029669.1 mouse_genomes_project 4 165993244 166004494 + MGP_C57BL6NJ_P0070367 Ube2j2 protein_coding protein_coding MGP_C57BL6NJ_T0070368.1 MGP_C57BL6NJ_G0029669.1 mouse_genomes_project 4 166002780 166004259 + Ube2j2 protein_coding processed_transcript MGP_C57BL6NJ_T0065187.1 MGP_C57BL6NJ_G0028474.1 mouse_genomes_project 4 9199888 9204856 + Rbm12b2 protein_coding processed_transcript MGP_C57BL6NJ_T0065188.1 MGP_C57BL6NJ_G0028474.1 mouse_genomes_project 4 9199891 9265784 + MGP_C57BL6NJ_P0065188 Rbm12b2 protein_coding protein_coding MGP_C57BL6NJ_T0065189.1 MGP_C57BL6NJ_G0028474.1 mouse_genomes_project 4 9199909 9205196 + Rbm12b2 protein_coding processed_transcript MGP_C57BL6NJ_T0065190.1 MGP_C57BL6NJ_G0028474.1 mouse_genomes_project 4 9199941 9265815 + MGP_C57BL6NJ_P0065190 Rbm12b2 protein_coding protein_coding MGP_C57BL6NJ_T0101654.1 MGP_C57BL6NJ_G0039700.1 mouse_genomes_project 4 42756890 42757020 - Gm23709 snoRNA snoRNA MGP_C57BL6NJ_T0070338.1 MGP_C57BL6NJ_G0029665.1 mouse_genomes_project 4 165912124 165916842 - MGP_C57BL6NJ_P0070338 Cptp protein_coding protein_coding MGP_C57BL6NJ_T0070339.1 MGP_C57BL6NJ_G0029665.1 mouse_genomes_project 4 165912697 165916764 - Cptp protein_coding processed_transcript MGP_C57BL6NJ_T0070340.1 MGP_C57BL6NJ_G0029665.1 mouse_genomes_project 4 165913767 165916220 - MGP_C57BL6NJ_P0070340 Cptp protein_coding protein_coding MGP_C57BL6NJ_T0069505.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149682034 149718051 - MGP_C57BL6NJ_P0069505 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069506.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149682034 149716351 - MGP_C57BL6NJ_P0069506 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069507.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149682034 149724181 - MGP_C57BL6NJ_P0069507 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069508.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697200 149717962 - MGP_C57BL6NJ_P0069508 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069509.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697222 149724225 - MGP_C57BL6NJ_P0069509 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069510.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697222 149724166 - MGP_C57BL6NJ_P0069510 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069511.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697245 149716644 - MGP_C57BL6NJ_P0069511 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069512.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697889 149718159 - MGP_C57BL6NJ_P0069512 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069513.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697952 149714598 - Fblim1 protein_coding processed_transcript MGP_C57BL6NJ_T0069514.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697968 149718015 - MGP_C57BL6NJ_P0069514 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069515.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697969 149716351 - MGP_C57BL6NJ_P0069515 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069516.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149697979 149716333 - MGP_C57BL6NJ_P0069516 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069517.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149713380 149724154 - MGP_C57BL6NJ_P0069517 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069518.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149713431 149724165 - MGP_C57BL6NJ_P0069518 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0069519.1 MGP_C57BL6NJ_G0029475.1 mouse_genomes_project 4 149713498 149724156 - MGP_C57BL6NJ_P0069519 Fblim1 protein_coding protein_coding MGP_C57BL6NJ_T0101714.1 MGP_C57BL6NJ_G0039760.1 mouse_genomes_project 4 139305556 139305630 + Snord99 snoRNA snoRNA MGP_C57BL6NJ_T0099105.1 MGP_C57BL6NJ_G0037169.1 mouse_genomes_project 4 98771207 98771321 + n-R5s189 rRNA rRNA MGP_C57BL6NJ_T0069871.1 MGP_C57BL6NJ_G0029579.1 mouse_genomes_project 4 159562316 159582079 + MGP_C57BL6NJ_P0069871 Gpr157 protein_coding protein_coding MGP_C57BL6NJ_T0067886.1 MGP_C57BL6NJ_G0029100.1 mouse_genomes_project 4 124367676 124368615 + MGP_C57BL6NJ_P0067886 Olfr1341 protein_coding protein_coding MGP_C57BL6NJ_T0099098.1 MGP_C57BL6NJ_G0037162.1 mouse_genomes_project 4 40694179 40694294 + n-R5s183 rRNA rRNA MGP_C57BL6NJ_T0067334.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113706389 113776036 + MGP_C57BL6NJ_P0067334 Nrd1 protein_coding protein_coding MGP_C57BL6NJ_T0067335.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113706389 113776036 + MGP_C57BL6NJ_P0067335 Nrd1 protein_coding protein_coding MGP_C57BL6NJ_T0067336.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113706504 113775420 + MGP_C57BL6NJ_P0067336 Nrd1 protein_coding protein_coding MGP_C57BL6NJ_T0067337.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113724530 113758933 + MGP_C57BL6NJ_P0067337 Nrd1 protein_coding protein_coding MGP_C57BL6NJ_T0067338.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113737160 113745613 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0067339.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113745307 113757502 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0067340.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113753831 113758203 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0067341.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113754276 113775734 + Nrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0067342.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113760576 113765167 + Nrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0067343.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113769207 113771130 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0067344.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113773192 113774059 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0067345.1 MGP_C57BL6NJ_G0028988.1 mouse_genomes_project 4 113773249 113774939 + Nrd1 protein_coding retained_intron MGP_C57BL6NJ_T0014770.1 MGP_C57BL6NJ_G0012815.1 mouse_genomes_project 4 12526172 12526499 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015165.1 MGP_C57BL6NJ_G0013210.1 mouse_genomes_project 4 143403585 143403896 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010853.1 MGP_C57BL6NJ_G0008938.1 mouse_genomes_project 4 113725410 113725486 + Mir761 miRNA miRNA MGP_C57BL6NJ_T0014792.1 MGP_C57BL6NJ_G0012837.1 mouse_genomes_project 4 18170371 18171675 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068537.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136508801 136524674 - MGP_C57BL6NJ_P0068537 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0068538.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136508806 136524249 - Txlna protein_coding retained_intron MGP_C57BL6NJ_T0068539.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136508806 136524414 - MGP_C57BL6NJ_P0068539 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0068540.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136514888 136524674 - MGP_C57BL6NJ_P0068540 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0068541.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136517118 136524587 - MGP_C57BL6NJ_P0068541 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0068542.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136517134 136524568 - MGP_C57BL6NJ_P0068542 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0068543.1 MGP_C57BL6NJ_G0029259.1 mouse_genomes_project 4 136523071 136524569 - MGP_C57BL6NJ_P0068543 Txlna protein_coding protein_coding MGP_C57BL6NJ_T0008193.1 MGP_C57BL6NJ_G0006686.1 mouse_genomes_project 4 150017933 150019260 + Gm29367 lincRNA lincRNA MGP_C57BL6NJ_T0067532.1 MGP_C57BL6NJ_G0029030.1 mouse_genomes_project 4 121142596 121143781 - MGP_C57BL6NJ_P0067532 Tex38 protein_coding protein_coding MGP_C57BL6NJ_T0014982.1 MGP_C57BL6NJ_G0013027.1 mouse_genomes_project 4 82624780 82625936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004579.1 MGP_C57BL6NJ_G0003985.1 mouse_genomes_project 4 8696018 8700012 - Gm11832 antisense antisense MGP_C57BL6NJ_T0004738.1 MGP_C57BL6NJ_G0004108.1 mouse_genomes_project 4 150239694 150243780 + Tmem51os1 antisense antisense MGP_C57BL6NJ_T0004739.1 MGP_C57BL6NJ_G0004108.1 mouse_genomes_project 4 150240020 150243812 + Tmem51os1 antisense antisense MGP_C57BL6NJ_T0004740.1 MGP_C57BL6NJ_G0004108.1 mouse_genomes_project 4 150240062 150243773 + Tmem51os1 antisense antisense MGP_C57BL6NJ_T0004741.1 MGP_C57BL6NJ_G0004108.1 mouse_genomes_project 4 150240578 150243790 + Tmem51os1 antisense antisense MGP_C57BL6NJ_T0004588.1 MGP_C57BL6NJ_G0003992.1 mouse_genomes_project 4 27177247 27178027 - Gm11915 antisense antisense MGP_C57BL6NJ_T0065327.1 MGP_C57BL6NJ_G0028513.1 mouse_genomes_project 4 23014359 23059107 + Gpr63 protein_coding processed_transcript MGP_C57BL6NJ_T0065328.1 MGP_C57BL6NJ_G0028513.1 mouse_genomes_project 4 23021396 23061040 + MGP_C57BL6NJ_P0065328 Gpr63 protein_coding protein_coding MGP_C57BL6NJ_T0065684.1 MGP_C57BL6NJ_G0028612.1 mouse_genomes_project 4 42575646 42577375 + 1700022I11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065685.1 MGP_C57BL6NJ_G0028612.1 mouse_genomes_project 4 42575673 42577341 + MGP_C57BL6NJ_P0065685 1700022I11Rik protein_coding protein_coding MGP_C57BL6NJ_T0065686.1 MGP_C57BL6NJ_G0028612.1 mouse_genomes_project 4 42575976 42577531 + MGP_C57BL6NJ_P0065686 1700022I11Rik protein_coding protein_coding MGP_C57BL6NJ_T0065687.1 MGP_C57BL6NJ_G0028612.1 mouse_genomes_project 4 42575988 42588123 + MGP_C57BL6NJ_P0065687 1700022I11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065688.1 MGP_C57BL6NJ_G0028612.1 mouse_genomes_project 4 42575988 42580369 + MGP_C57BL6NJ_P0065688 1700022I11Rik protein_coding protein_coding MGP_C57BL6NJ_T0065666.1 MGP_C57BL6NJ_G0028609.1 mouse_genomes_project 4 42468552 42474752 - MGP_C57BL6NJ_P0065666 Fam205c protein_coding protein_coding MGP_C57BL6NJ_T0065667.1 MGP_C57BL6NJ_G0028609.1 mouse_genomes_project 4 42468751 42474744 - MGP_C57BL6NJ_P0065667 Fam205c protein_coding protein_coding MGP_C57BL6NJ_T0065668.1 MGP_C57BL6NJ_G0028609.1 mouse_genomes_project 4 42472048 42474270 - Fam205c protein_coding processed_transcript MGP_C57BL6NJ_T0065669.1 MGP_C57BL6NJ_G0028609.1 mouse_genomes_project 4 42472236 42474783 - Fam205c protein_coding processed_transcript MGP_C57BL6NJ_T0066450.1 MGP_C57BL6NJ_G0028787.1 mouse_genomes_project 4 64507645 64511077 + MGP_C57BL6NJ_P0066450 Orm2 protein_coding protein_coding MGP_C57BL6NJ_T0066451.1 MGP_C57BL6NJ_G0028787.1 mouse_genomes_project 4 64507683 64510964 + MGP_C57BL6NJ_P0066451 Orm2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010882.1 MGP_C57BL6NJ_G0008967.1 mouse_genomes_project 4 145182546 145182631 + Mir7018 miRNA miRNA MGP_C57BL6NJ_T0015099.1 MGP_C57BL6NJ_G0013144.1 mouse_genomes_project 4 123286486 123287067 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066969.1 MGP_C57BL6NJ_G0028913.1 mouse_genomes_project 4 105651170 105767694 + MGP_C57BL6NJ_P0066969 Dnajc6 protein_coding protein_coding MGP_C57BL6NJ_T0066970.1 MGP_C57BL6NJ_G0028913.1 mouse_genomes_project 4 105664109 105808524 + MGP_C57BL6NJ_P0066970 Dnajc6 protein_coding protein_coding MGP_C57BL6NJ_T0066971.1 MGP_C57BL6NJ_G0028913.1 mouse_genomes_project 4 105664214 105777076 + MGP_C57BL6NJ_P0066971 Dnajc6 protein_coding protein_coding MGP_C57BL6NJ_T0066972.1 MGP_C57BL6NJ_G0028913.1 mouse_genomes_project 4 105664268 105760195 + Dnajc6 protein_coding processed_transcript MGP_C57BL6NJ_T0066973.1 MGP_C57BL6NJ_G0028913.1 mouse_genomes_project 4 105708663 105808532 + MGP_C57BL6NJ_P0066973 Dnajc6 protein_coding protein_coding MGP_C57BL6NJ_T0101668.1 MGP_C57BL6NJ_G0039714.1 mouse_genomes_project 4 57651678 57651810 - Gm25053 snoRNA snoRNA MGP_C57BL6NJ_T0069867.1 MGP_C57BL6NJ_G0029578.1 mouse_genomes_project 4 159444511 159468105 - MGP_C57BL6NJ_P0069867 H6pd protein_coding protein_coding MGP_C57BL6NJ_T0069868.1 MGP_C57BL6NJ_G0029578.1 mouse_genomes_project 4 159444511 159476908 - MGP_C57BL6NJ_P0069868 H6pd protein_coding protein_coding MGP_C57BL6NJ_T0069869.1 MGP_C57BL6NJ_G0029578.1 mouse_genomes_project 4 159460822 159466240 - MGP_C57BL6NJ_P0069869 H6pd protein_coding protein_coding MGP_C57BL6NJ_T0069870.1 MGP_C57BL6NJ_G0029578.1 mouse_genomes_project 4 159464750 159466265 - H6pd protein_coding processed_transcript MGP_C57BL6NJ_T0069974.1 MGP_C57BL6NJ_G0029600.1 mouse_genomes_project 4 161721339 161736194 + Nol9 protein_coding retained_intron MGP_C57BL6NJ_T0069975.1 MGP_C57BL6NJ_G0029600.1 mouse_genomes_project 4 161721345 161752178 + MGP_C57BL6NJ_P0069975 Nol9 protein_coding protein_coding MGP_C57BL6NJ_T0069976.1 MGP_C57BL6NJ_G0029600.1 mouse_genomes_project 4 161721354 161743430 + Nol9 protein_coding retained_intron MGP_C57BL6NJ_T0069977.1 MGP_C57BL6NJ_G0029600.1 mouse_genomes_project 4 161721354 161753648 + MGP_C57BL6NJ_P0069977 Nol9 protein_coding protein_coding MGP_C57BL6NJ_T0069978.1 MGP_C57BL6NJ_G0029600.1 mouse_genomes_project 4 161721381 161752196 + MGP_C57BL6NJ_P0069978 Nol9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070379.1 MGP_C57BL6NJ_G0029673.1 mouse_genomes_project 4 166065058 166067828 + MGP_C57BL6NJ_P0070379 Tnfrsf4 protein_coding protein_coding MGP_C57BL6NJ_T0070380.1 MGP_C57BL6NJ_G0029673.1 mouse_genomes_project 4 166065071 166067815 + Tnfrsf4 protein_coding processed_transcript MGP_C57BL6NJ_T0070381.1 MGP_C57BL6NJ_G0029673.1 mouse_genomes_project 4 166065464 166066474 + Tnfrsf4 protein_coding processed_transcript MGP_C57BL6NJ_T0069615.1 MGP_C57BL6NJ_G0029520.1 mouse_genomes_project 4 152833230 152843216 - MGP_C57BL6NJ_P0069615 Aadacl3 protein_coding protein_coding MGP_C57BL6NJ_T0101637.1 MGP_C57BL6NJ_G0039683.1 mouse_genomes_project 4 3410018 3410150 - Gm22473 snoRNA snoRNA MGP_C57BL6NJ_T0008036.1 MGP_C57BL6NJ_G0006568.1 mouse_genomes_project 4 59030237 59058290 + Gm26889 lincRNA lincRNA MGP_C57BL6NJ_T0068352.1 MGP_C57BL6NJ_G0029221.1 mouse_genomes_project 4 133986606 133990526 - MGP_C57BL6NJ_P0068352 Gjb3 protein_coding protein_coding MGP_C57BL6NJ_T0068353.1 MGP_C57BL6NJ_G0029221.1 mouse_genomes_project 4 133986606 133992209 - MGP_C57BL6NJ_P0068353 Gjb3 protein_coding protein_coding MGP_C57BL6NJ_T0068061.1 MGP_C57BL6NJ_G0029150.1 mouse_genomes_project 4 128875367 128892389 + MGP_C57BL6NJ_P0068061 9530002B09Rik protein_coding protein_coding MGP_C57BL6NJ_T0069390.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148663082 - MGP_C57BL6NJ_P0069390 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069391.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148642557 - MGP_C57BL6NJ_P0069391 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069392.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148565213 - MGP_C57BL6NJ_P0069392 Arhgef10l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069393.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148572455 - MGP_C57BL6NJ_P0069393 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069394.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148642557 - MGP_C57BL6NJ_P0069394 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069395.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148642563 - MGP_C57BL6NJ_P0069395 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069396.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148496330 148569937 - MGP_C57BL6NJ_P0069396 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069397.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148528615 148556531 - MGP_C57BL6NJ_P0069397 Arhgef10l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069398.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148563544 148569921 - MGP_C57BL6NJ_P0069398 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069399.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148568983 148580584 - Arhgef10l protein_coding retained_intron MGP_C57BL6NJ_T0069400.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148580475 148643167 - MGP_C57BL6NJ_P0069400 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0069401.1 MGP_C57BL6NJ_G0029450.1 mouse_genomes_project 4 148581712 148608670 - MGP_C57BL6NJ_P0069401 Arhgef10l protein_coding protein_coding MGP_C57BL6NJ_T0008040.1 MGP_C57BL6NJ_G0006572.1 mouse_genomes_project 4 63842142 63846164 - Gm11211 lincRNA lincRNA MGP_C57BL6NJ_T0065603.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41201128 41203993 - MGP_C57BL6NJ_P0065603 Sigmar1 protein_coding protein_coding MGP_C57BL6NJ_T0065604.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41201128 41203993 - MGP_C57BL6NJ_P0065604 Sigmar1 protein_coding protein_coding MGP_C57BL6NJ_T0065605.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41201734 41207712 - Sigmar1 protein_coding processed_transcript MGP_C57BL6NJ_T0065606.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41202139 41218060 - Sigmar1 protein_coding processed_transcript MGP_C57BL6NJ_T0065607.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41203082 41203820 - Sigmar1 protein_coding retained_intron MGP_C57BL6NJ_T0065608.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41203214 41203682 - Sigmar1 protein_coding retained_intron MGP_C57BL6NJ_T0065609.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41203236 41203954 - Sigmar1 protein_coding processed_transcript MGP_C57BL6NJ_T0065610.1 MGP_C57BL6NJ_G0028583.1 mouse_genomes_project 4 41217488 41218818 - Sigmar1 protein_coding processed_transcript MGP_C57BL6NJ_T0008137.1 MGP_C57BL6NJ_G0006647.1 mouse_genomes_project 4 135956761 135958581 + Gm15906 lincRNA lincRNA MGP_C57BL6NJ_T0015141.1 MGP_C57BL6NJ_G0013186.1 mouse_genomes_project 4 133672007 133672496 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068190.1 MGP_C57BL6NJ_G0029184.1 mouse_genomes_project 4 131425067 131447690 + MGP_C57BL6NJ_P0068190 Rspo1 protein_coding protein_coding MGP_C57BL6NJ_T0068191.1 MGP_C57BL6NJ_G0029184.1 mouse_genomes_project 4 131446070 131447116 + Rspo1 protein_coding processed_transcript MGP_C57BL6NJ_T0014900.1 MGP_C57BL6NJ_G0012945.1 mouse_genomes_project 4 51581205 51582771 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067592.1 MGP_C57BL6NJ_G0029043.1 mouse_genomes_project 4 121535844 121548048 - MGP_C57BL6NJ_P0067592 Lurap1 protein_coding protein_coding MGP_C57BL6NJ_T0067595.1 MGP_C57BL6NJ_G0029043.1 mouse_genomes_project 4 121540958 121554604 - Lurap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067278.1 MGP_C57BL6NJ_G0028973.1 mouse_genomes_project 4 112865518 112937388 - MGP_C57BL6NJ_P0067278 Zyg11b protein_coding protein_coding MGP_C57BL6NJ_T0067279.1 MGP_C57BL6NJ_G0028973.1 mouse_genomes_project 4 112877267 112877840 - Zyg11b protein_coding processed_transcript MGP_C57BL6NJ_T0004589.1 MGP_C57BL6NJ_G0003993.1 mouse_genomes_project 4 31195855 31209167 - Bach2os antisense antisense MGP_C57BL6NJ_T0004590.1 MGP_C57BL6NJ_G0003993.1 mouse_genomes_project 4 31199272 31209122 - Bach2os antisense antisense MGP_C57BL6NJ_T0004591.1 MGP_C57BL6NJ_G0003993.1 mouse_genomes_project 4 31201814 31209213 - Bach2os antisense antisense MGP_C57BL6NJ_T0069594.1 MGP_C57BL6NJ_G0029505.1 mouse_genomes_project 4 152189641 152192352 - MGP_C57BL6NJ_P0069594 protein_coding protein_coding MGP_C57BL6NJ_T0067908.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124929515 124944065 - MGP_C57BL6NJ_P0067908 Ermap protein_coding protein_coding MGP_C57BL6NJ_T0067909.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124929649 124944030 - MGP_C57BL6NJ_P0067909 Ermap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067910.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124931606 124944030 - Ermap protein_coding retained_intron MGP_C57BL6NJ_T0067911.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124932614 124944010 - Ermap protein_coding processed_transcript MGP_C57BL6NJ_T0067912.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124939748 124942801 - MGP_C57BL6NJ_P0067912 Ermap protein_coding protein_coding MGP_C57BL6NJ_T0067913.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124939809 124944005 - MGP_C57BL6NJ_P0067913 Ermap protein_coding protein_coding MGP_C57BL6NJ_T0067914.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124941248 124944050 - MGP_C57BL6NJ_P0067914 Ermap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067915.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124941381 124944047 - MGP_C57BL6NJ_P0067915 Ermap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067916.1 MGP_C57BL6NJ_G0029113.1 mouse_genomes_project 4 124941389 124944065 - MGP_C57BL6NJ_P0067916 Ermap protein_coding protein_coding MGP_C57BL6NJ_T0065317.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22626900 22838687 - MGP_C57BL6NJ_P0065317 Klhl32 protein_coding protein_coding MGP_C57BL6NJ_T0065318.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22626900 22894840 - MGP_C57BL6NJ_P0065318 Klhl32 protein_coding protein_coding MGP_C57BL6NJ_T0065319.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22630307 22765257 - MGP_C57BL6NJ_P0065319 Klhl32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065320.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22630396 22894647 - MGP_C57BL6NJ_P0065320 Klhl32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065321.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22631614 22894802 - MGP_C57BL6NJ_P0065321 Klhl32 protein_coding protein_coding MGP_C57BL6NJ_T0065322.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22665010 22894647 - Klhl32 protein_coding retained_intron MGP_C57BL6NJ_T0065323.1 MGP_C57BL6NJ_G0028511.1 mouse_genomes_project 4 22665552 22695365 - Klhl32 protein_coding processed_transcript MGP_C57BL6NJ_T0068519.1 MGP_C57BL6NJ_G0029256.1 mouse_genomes_project 4 136488912 136494839 - MGP_C57BL6NJ_P0068519 Dcdc2b protein_coding protein_coding MGP_C57BL6NJ_T0068520.1 MGP_C57BL6NJ_G0029256.1 mouse_genomes_project 4 136489110 136489830 - Dcdc2b protein_coding retained_intron MGP_C57BL6NJ_T0068521.1 MGP_C57BL6NJ_G0029256.1 mouse_genomes_project 4 136489329 136494836 - MGP_C57BL6NJ_P0068521 Dcdc2b protein_coding protein_coding MGP_C57BL6NJ_T0068130.1 MGP_C57BL6NJ_G0029166.1 mouse_genomes_project 4 130035744 130052465 - MGP_C57BL6NJ_P0068130 Akirin1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068131.1 MGP_C57BL6NJ_G0029166.1 mouse_genomes_project 4 130036704 130042398 - Akirin1 protein_coding processed_transcript MGP_C57BL6NJ_T0068132.1 MGP_C57BL6NJ_G0029166.1 mouse_genomes_project 4 130037830 130052532 - Akirin1 protein_coding processed_transcript MGP_C57BL6NJ_T0070388.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166091353 166112180 - MGP_C57BL6NJ_P0070388 Ttll10 protein_coding protein_coding MGP_C57BL6NJ_T0070389.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166091426 166120747 - MGP_C57BL6NJ_P0070389 Ttll10 protein_coding protein_coding MGP_C57BL6NJ_T0070390.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166091813 166111828 - MGP_C57BL6NJ_P0070390 Ttll10 protein_coding protein_coding MGP_C57BL6NJ_T0070391.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166092318 166105146 - Ttll10 protein_coding processed_transcript MGP_C57BL6NJ_T0070392.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166103486 166120677 - Ttll10 protein_coding retained_intron MGP_C57BL6NJ_T0070393.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166104219 166106006 - Ttll10 protein_coding processed_transcript MGP_C57BL6NJ_T0070394.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166104229 166109335 - Ttll10 protein_coding processed_transcript MGP_C57BL6NJ_T0070395.1 MGP_C57BL6NJ_G0029675.1 mouse_genomes_project 4 166108149 166109303 - Ttll10 protein_coding retained_intron MGP_C57BL6NJ_T0066558.1 MGP_C57BL6NJ_G0028815.1 mouse_genomes_project 4 83540976 83546964 + MGP_C57BL6NJ_P0066558 Tyrp1 protein_coding protein_coding MGP_C57BL6NJ_T0066559.1 MGP_C57BL6NJ_G0028815.1 mouse_genomes_project 4 83541083 83561509 + MGP_C57BL6NJ_P0066559 Tyrp1 protein_coding protein_coding MGP_C57BL6NJ_T0066560.1 MGP_C57BL6NJ_G0028815.1 mouse_genomes_project 4 83541160 83561510 + MGP_C57BL6NJ_P0066560 Tyrp1 protein_coding protein_coding MGP_C57BL6NJ_T0066561.1 MGP_C57BL6NJ_G0028815.1 mouse_genomes_project 4 83555635 83560791 + MGP_C57BL6NJ_P0066561 Tyrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065780.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43118628 43126794 - MGP_C57BL6NJ_P0065780 Cd72 protein_coding protein_coding MGP_C57BL6NJ_T0065781.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43119890 43126730 - MGP_C57BL6NJ_P0065781 Cd72 protein_coding protein_coding MGP_C57BL6NJ_T0065782.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43119890 43126751 - MGP_C57BL6NJ_P0065782 Cd72 protein_coding protein_coding MGP_C57BL6NJ_T0065783.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43119890 43126795 - MGP_C57BL6NJ_P0065783 Cd72 protein_coding protein_coding MGP_C57BL6NJ_T0065784.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43119901 43126793 - MGP_C57BL6NJ_P0065784 Cd72 protein_coding protein_coding MGP_C57BL6NJ_T0065785.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43120196 43122109 - Cd72 protein_coding retained_intron MGP_C57BL6NJ_T0065786.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43122011 43124539 - Cd72 protein_coding retained_intron MGP_C57BL6NJ_T0065787.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43124476 43126779 - Cd72 protein_coding retained_intron MGP_C57BL6NJ_T0065788.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43124487 43126490 - Cd72 protein_coding processed_transcript MGP_C57BL6NJ_T0065789.1 MGP_C57BL6NJ_G0028623.1 mouse_genomes_project 4 43124767 43126793 - Cd72 protein_coding processed_transcript MGP_C57BL6NJ_T0066616.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86323590 86366856 - MGP_C57BL6NJ_P0066616 Psip1 protein_coding protein_coding MGP_C57BL6NJ_T0066617.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86329234 86339480 - Psip1 protein_coding retained_intron MGP_C57BL6NJ_T0066618.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86341058 86344087 - MGP_C57BL6NJ_P0066618 Psip1 protein_coding protein_coding MGP_C57BL6NJ_T0066619.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86341058 86366855 - MGP_C57BL6NJ_P0066619 Psip1 protein_coding protein_coding MGP_C57BL6NJ_T0066620.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86341058 86366850 - MGP_C57BL6NJ_P0066620 Psip1 protein_coding protein_coding MGP_C57BL6NJ_T0066621.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86342017 86344166 - Psip1 protein_coding retained_intron MGP_C57BL6NJ_T0066623.1 MGP_C57BL6NJ_G0028824.1 mouse_genomes_project 4 86355422 86366575 - MGP_C57BL6NJ_P0066623 Psip1 protein_coding protein_coding MGP_C57BL6NJ_T0004623.1 MGP_C57BL6NJ_G0004021.1 mouse_genomes_project 4 63742067 63748102 - Gm11209 antisense antisense MGP_C57BL6NJ_T0069079.1 MGP_C57BL6NJ_G0029373.1 mouse_genomes_project 4 143146288 143208195 + MGP_C57BL6NJ_P0069079 Myom3 protein_coding protein_coding MGP_C57BL6NJ_T0069080.1 MGP_C57BL6NJ_G0029373.1 mouse_genomes_project 4 143187210 143208195 + Myom3 protein_coding retained_intron MGP_C57BL6NJ_T0069081.1 MGP_C57BL6NJ_G0029373.1 mouse_genomes_project 4 143189666 143194961 + Myom3 protein_coding retained_intron MGP_C57BL6NJ_T0066982.1 MGP_C57BL6NJ_G0028916.1 mouse_genomes_project 4 106003314 106014486 - MGP_C57BL6NJ_P0066982 protein_coding protein_coding MGP_C57BL6NJ_T0066983.1 MGP_C57BL6NJ_G0028916.1 mouse_genomes_project 4 106003479 106006501 - MGP_C57BL6NJ_P0066983 protein_coding protein_coding MGP_C57BL6NJ_T0101660.1 MGP_C57BL6NJ_G0039706.1 mouse_genomes_project 4 52029933 52030042 + Gm23043 snoRNA snoRNA MGP_C57BL6NJ_T0066370.1 MGP_C57BL6NJ_G0028763.1 mouse_genomes_project 4 60980088 60983816 + MGP_C57BL6NJ_P0066370 Mup6 protein_coding protein_coding MGP_C57BL6NJ_T0099447.1 MGP_C57BL6NJ_G0037504.1 mouse_genomes_project 4 98865416 98873182 + Gm28096 sense_intronic sense_intronic MGP_C57BL6NJ_T0069962.1 MGP_C57BL6NJ_G0029596.1 mouse_genomes_project 4 161669888 161676514 - MGP_C57BL6NJ_P0069962 Phf13 protein_coding protein_coding MGP_C57BL6NJ_T0004684.1 MGP_C57BL6NJ_G0004065.1 mouse_genomes_project 4 126118127 126133062 + Foxo6os antisense antisense MGP_C57BL6NJ_T0018577.1 MGP_C57BL6NJ_G0015977.1 mouse_genomes_project 4 164942095 164943004 - Gm20421 processed_transcript processed_transcript MGP_C57BL6NJ_T0066200.1 MGP_C57BL6NJ_G0028719.1 mouse_genomes_project 4 53561150 53692448 - MGP_C57BL6NJ_P0066200 Abca1 protein_coding protein_coding MGP_C57BL6NJ_T0066201.1 MGP_C57BL6NJ_G0028719.1 mouse_genomes_project 4 53565851 53571290 - Abca1 protein_coding processed_transcript MGP_C57BL6NJ_T0014833.1 MGP_C57BL6NJ_G0012878.1 mouse_genomes_project 4 29244332 29244895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067557.1 MGP_C57BL6NJ_G0029036.1 mouse_genomes_project 4 121285672 121296190 - MGP_C57BL6NJ_P0067557 Dmbx1 protein_coding protein_coding MGP_C57BL6NJ_T0067558.1 MGP_C57BL6NJ_G0029036.1 mouse_genomes_project 4 121285672 121310527 - MGP_C57BL6NJ_P0067558 Dmbx1 protein_coding protein_coding MGP_C57BL6NJ_T0067559.1 MGP_C57BL6NJ_G0029036.1 mouse_genomes_project 4 121285673 121310527 - MGP_C57BL6NJ_P0067559 Dmbx1 protein_coding protein_coding MGP_C57BL6NJ_T0007989.1 MGP_C57BL6NJ_G0006528.1 mouse_genomes_project 4 20321850 20324383 + Gm30731 lincRNA lincRNA MGP_C57BL6NJ_T0015210.1 MGP_C57BL6NJ_G0013255.1 mouse_genomes_project 4 157028143 157028568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068155.1 MGP_C57BL6NJ_G0029176.1 mouse_genomes_project 4 131127832 131147331 + MGP_C57BL6NJ_P0068155 Sf3a3 protein_coding protein_coding MGP_C57BL6NJ_T0068156.1 MGP_C57BL6NJ_G0029176.1 mouse_genomes_project 4 131127939 131131784 + Sf3a3 protein_coding processed_transcript MGP_C57BL6NJ_T0068157.1 MGP_C57BL6NJ_G0029176.1 mouse_genomes_project 4 131134789 131136439 + Sf3a3 protein_coding processed_transcript MGP_C57BL6NJ_T0014899.1 MGP_C57BL6NJ_G0012944.1 mouse_genomes_project 4 51581205 51582762 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018551.1 MGP_C57BL6NJ_G0015965.1 mouse_genomes_project 4 129163476 129165643 + 4933421A08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0065038.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2336649 2500491 + Fam110b protein_coding processed_transcript MGP_C57BL6NJ_T0065039.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2336661 2503210 + MGP_C57BL6NJ_P0065039 Fam110b protein_coding protein_coding MGP_C57BL6NJ_T0065040.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2336665 2431898 + Fam110b protein_coding retained_intron MGP_C57BL6NJ_T0065041.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2336730 2500603 + Fam110b protein_coding processed_transcript MGP_C57BL6NJ_T0065042.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2336775 2839199 + Fam110b protein_coding processed_transcript MGP_C57BL6NJ_T0065043.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2416313 2503210 + MGP_C57BL6NJ_P0065043 Fam110b protein_coding protein_coding MGP_C57BL6NJ_T0065044.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2474342 2500954 + MGP_C57BL6NJ_P0065044 Fam110b protein_coding protein_coding MGP_C57BL6NJ_T0065045.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2474342 2502055 + MGP_C57BL6NJ_P0065045 Fam110b protein_coding protein_coding MGP_C57BL6NJ_T0065046.1 MGP_C57BL6NJ_G0028445.1 mouse_genomes_project 4 2500192 2500640 + Fam110b protein_coding processed_transcript MGP_C57BL6NJ_T0007994.1 MGP_C57BL6NJ_G0006533.1 mouse_genomes_project 4 24816112 24891602 - 4930548K13Rik lincRNA lincRNA MGP_C57BL6NJ_T0014826.1 MGP_C57BL6NJ_G0012871.1 mouse_genomes_project 4 26952376 26953294 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014819.1 MGP_C57BL6NJ_G0012864.1 mouse_genomes_project 4 25441278 25441548 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065083.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6217069 6230049 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065084.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6217093 6302264 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065085.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6217093 6409267 + MGP_C57BL6NJ_P0065085 Clvs1 protein_coding protein_coding MGP_C57BL6NJ_T0065086.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6217106 6230047 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065087.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6217123 6229209 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065088.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6219231 6409267 + MGP_C57BL6NJ_P0065088 Clvs1 protein_coding protein_coding MGP_C57BL6NJ_T0065089.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6259610 6386911 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065090.1 MGP_C57BL6NJ_G0028454.1 mouse_genomes_project 4 6284344 6386948 + Clvs1 protein_coding processed_transcript MGP_C57BL6NJ_T0015151.1 MGP_C57BL6NJ_G0013196.1 mouse_genomes_project 4 139864687 139864972 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008061.1 MGP_C57BL6NJ_G0006591.1 mouse_genomes_project 4 92363923 92398930 + Gm12603 lincRNA lincRNA MGP_C57BL6NJ_T0008062.1 MGP_C57BL6NJ_G0006591.1 mouse_genomes_project 4 92372431 92399033 + Gm12603 lincRNA lincRNA MGP_C57BL6NJ_T0066234.1 MGP_C57BL6NJ_G0028728.1 mouse_genomes_project 4 57478511 57479950 - MGP_C57BL6NJ_P0066234 Actl7b protein_coding protein_coding MGP_C57BL6NJ_T0004735.1 MGP_C57BL6NJ_G0004105.1 mouse_genomes_project 4 150030672 150043077 + Fhad1os2 antisense antisense MGP_C57BL6NJ_T0014993.1 MGP_C57BL6NJ_G0013038.1 mouse_genomes_project 4 87351455 87351762 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065775.1 MGP_C57BL6NJ_G0028622.1 mouse_genomes_project 4 43114105 43120231 + MGP_C57BL6NJ_P0065775 Tesk1 protein_coding protein_coding MGP_C57BL6NJ_T0065776.1 MGP_C57BL6NJ_G0028622.1 mouse_genomes_project 4 43115487 43119961 + MGP_C57BL6NJ_P0065776 Tesk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065777.1 MGP_C57BL6NJ_G0028622.1 mouse_genomes_project 4 43116741 43117547 + Tesk1 protein_coding retained_intron MGP_C57BL6NJ_T0065778.1 MGP_C57BL6NJ_G0028622.1 mouse_genomes_project 4 43116874 43117984 + Tesk1 protein_coding retained_intron MGP_C57BL6NJ_T0065779.1 MGP_C57BL6NJ_G0028622.1 mouse_genomes_project 4 43117116 43118178 + Tesk1 protein_coding retained_intron MGP_C57BL6NJ_T0014767.1 MGP_C57BL6NJ_G0012812.1 mouse_genomes_project 4 11443607 11444453 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018527.1 MGP_C57BL6NJ_G0015947.1 mouse_genomes_project 4 92688582 92711310 + Gm12609 processed_transcript processed_transcript MGP_C57BL6NJ_T0069637.1 MGP_C57BL6NJ_G0029529.1 mouse_genomes_project 4 153577276 153613116 - MGP_C57BL6NJ_P0069637 Tnfrsf1b protein_coding protein_coding MGP_C57BL6NJ_T0069638.1 MGP_C57BL6NJ_G0029529.1 mouse_genomes_project 4 153589213 153613116 - MGP_C57BL6NJ_P0069638 Tnfrsf1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101694.1 MGP_C57BL6NJ_G0039740.1 mouse_genomes_project 4 122678160 122678231 - Snord38a snoRNA snoRNA MGP_C57BL6NJ_T0010823.1 MGP_C57BL6NJ_G0008908.1 mouse_genomes_project 4 35691113 35691190 - Mir873a miRNA miRNA MGP_C57BL6NJ_T0068730.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139352415 139431054 - MGP_C57BL6NJ_P0068730 Phactr4 protein_coding protein_coding MGP_C57BL6NJ_T0068731.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139352422 139431011 - MGP_C57BL6NJ_P0068731 Phactr4 protein_coding protein_coding MGP_C57BL6NJ_T0068732.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139354741 139403094 - MGP_C57BL6NJ_P0068732 Phactr4 protein_coding protein_coding MGP_C57BL6NJ_T0068733.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139357158 139366976 - Phactr4 protein_coding processed_transcript MGP_C57BL6NJ_T0068734.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139367395 139431006 - MGP_C57BL6NJ_P0068734 Phactr4 protein_coding protein_coding MGP_C57BL6NJ_T0068735.1 MGP_C57BL6NJ_G0029294.1 mouse_genomes_project 4 139375593 139403082 - MGP_C57BL6NJ_P0068735 Phactr4 protein_coding protein_coding MGP_C57BL6NJ_T0069582.1 MGP_C57BL6NJ_G0029495.1 mouse_genomes_project 4 151701171 151718230 - MGP_C57BL6NJ_P0069582 Oog4 protein_coding protein_coding MGP_C57BL6NJ_T0069583.1 MGP_C57BL6NJ_G0029495.1 mouse_genomes_project 4 151701172 151718210 - MGP_C57BL6NJ_P0069583 Oog4 protein_coding protein_coding MGP_C57BL6NJ_T0014798.1 MGP_C57BL6NJ_G0012843.1 mouse_genomes_project 4 19930543 19930942 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068166.1 MGP_C57BL6NJ_G0029178.1 mouse_genomes_project 4 131221423 131271770 + MGP_C57BL6NJ_P0068166 Mtf1 protein_coding protein_coding MGP_C57BL6NJ_T0068167.1 MGP_C57BL6NJ_G0029178.1 mouse_genomes_project 4 131221868 131272191 + MGP_C57BL6NJ_P0068167 Mtf1 protein_coding protein_coding MGP_C57BL6NJ_T0068168.1 MGP_C57BL6NJ_G0029178.1 mouse_genomes_project 4 131221868 131240291 + MGP_C57BL6NJ_P0068168 Mtf1 protein_coding protein_coding MGP_C57BL6NJ_T0068169.1 MGP_C57BL6NJ_G0029178.1 mouse_genomes_project 4 131221901 131225550 + Mtf1 protein_coding retained_intron MGP_C57BL6NJ_T0068170.1 MGP_C57BL6NJ_G0029178.1 mouse_genomes_project 4 131221997 131224912 + MGP_C57BL6NJ_P0068170 Mtf1 protein_coding protein_coding MGP_C57BL6NJ_T0065273.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19548243 19563508 + Usp45 protein_coding processed_transcript MGP_C57BL6NJ_T0065274.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19557288 19565863 + Usp45 protein_coding retained_intron MGP_C57BL6NJ_T0065275.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19557299 19624455 + MGP_C57BL6NJ_P0065275 Usp45 protein_coding protein_coding MGP_C57BL6NJ_T0065276.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19557299 19624457 + MGP_C57BL6NJ_P0065276 Usp45 protein_coding protein_coding MGP_C57BL6NJ_T0065277.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19557308 19582667 + MGP_C57BL6NJ_P0065277 Usp45 protein_coding protein_coding MGP_C57BL6NJ_T0065278.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19557325 19624457 + MGP_C57BL6NJ_P0065278 Usp45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065279.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19562768 19624455 + MGP_C57BL6NJ_P0065279 Usp45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065280.1 MGP_C57BL6NJ_G0028504.1 mouse_genomes_project 4 19565746 19600877 + MGP_C57BL6NJ_P0065280 Usp45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067979.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125322061 125362973 + MGP_C57BL6NJ_P0067979 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067980.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324718 125426116 + MGP_C57BL6NJ_P0067980 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067981.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324742 125380198 + MGP_C57BL6NJ_P0067981 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067982.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324745 125426116 + MGP_C57BL6NJ_P0067982 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067983.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324749 125393828 + Foxj3 protein_coding retained_intron MGP_C57BL6NJ_T0067984.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324755 125380207 + MGP_C57BL6NJ_P0067984 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067985.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324764 125351204 + Foxj3 protein_coding retained_intron MGP_C57BL6NJ_T0067986.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125324836 125363000 + MGP_C57BL6NJ_P0067986 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067987.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125325579 125363101 + MGP_C57BL6NJ_P0067987 Foxj3 protein_coding protein_coding MGP_C57BL6NJ_T0067988.1 MGP_C57BL6NJ_G0029126.1 mouse_genomes_project 4 125414194 125416265 + Foxj3 protein_coding processed_transcript MGP_C57BL6NJ_T0011838.1 MGP_C57BL6NJ_G0009923.1 mouse_genomes_project 4 110466631 110466942 - Gm24363 misc_RNA misc_RNA MGP_C57BL6NJ_T0015221.1 MGP_C57BL6NJ_G0013266.1 mouse_genomes_project 4 161856203 161856687 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015032.1 MGP_C57BL6NJ_G0013077.1 mouse_genomes_project 4 102815291 102815712 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069197.1 MGP_C57BL6NJ_G0029404.1 mouse_genomes_project 4 144993861 145008568 - MGP_C57BL6NJ_P0069197 Cela3a protein_coding protein_coding MGP_C57BL6NJ_T0015068.1 MGP_C57BL6NJ_G0013113.1 mouse_genomes_project 4 113628098 113628334 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004751.1 MGP_C57BL6NJ_G0004117.1 mouse_genomes_project 4 158272082 158279746 + Gm17029 antisense antisense MGP_C57BL6NJ_T0004752.1 MGP_C57BL6NJ_G0004117.1 mouse_genomes_project 4 158272111 158296389 + Gm17029 antisense antisense MGP_C57BL6NJ_T0004753.1 MGP_C57BL6NJ_G0004117.1 mouse_genomes_project 4 158272145 158278784 + Gm17029 antisense antisense MGP_C57BL6NJ_T0100344.1 MGP_C57BL6NJ_G0038390.1 mouse_genomes_project 4 40548984 40549087 - Gm24650 snRNA snRNA MGP_C57BL6NJ_T0066790.1 MGP_C57BL6NJ_G0028873.1 mouse_genomes_project 4 98419831 98577085 + MGP_C57BL6NJ_P0066790 Tek protein_coding protein_coding MGP_C57BL6NJ_T0066791.1 MGP_C57BL6NJ_G0028873.1 mouse_genomes_project 4 98419842 98577048 + MGP_C57BL6NJ_P0066791 Tek protein_coding protein_coding MGP_C57BL6NJ_T0066792.1 MGP_C57BL6NJ_G0028873.1 mouse_genomes_project 4 98420060 98576791 + MGP_C57BL6NJ_P0066792 Tek protein_coding protein_coding MGP_C57BL6NJ_T0066793.1 MGP_C57BL6NJ_G0028873.1 mouse_genomes_project 4 98497829 98512493 + Tek protein_coding processed_transcript MGP_C57BL6NJ_T0004748.1 MGP_C57BL6NJ_G0004114.1 mouse_genomes_project 4 157850269 157851556 - Gm13209 antisense antisense MGP_C57BL6NJ_T0067728.1 MGP_C57BL6NJ_G0029068.1 mouse_genomes_project 4 122639966 122645184 - MGP_C57BL6NJ_P0067728 Plk3 protein_coding protein_coding MGP_C57BL6NJ_T0067729.1 MGP_C57BL6NJ_G0029068.1 mouse_genomes_project 4 122639974 122645264 - Plk3 protein_coding processed_transcript MGP_C57BL6NJ_T0065212.1 MGP_C57BL6NJ_G0028480.1 mouse_genomes_project 4 11927427 12097255 - MGP_C57BL6NJ_P0065212 Lrrc69 protein_coding protein_coding MGP_C57BL6NJ_T0065213.1 MGP_C57BL6NJ_G0028480.1 mouse_genomes_project 4 11961060 12054623 - Lrrc69 protein_coding processed_transcript MGP_C57BL6NJ_T0065214.1 MGP_C57BL6NJ_G0028480.1 mouse_genomes_project 4 11961060 12097247 - MGP_C57BL6NJ_P0065214 Lrrc69 protein_coding protein_coding MGP_C57BL6NJ_T0014992.1 MGP_C57BL6NJ_G0013037.1 mouse_genomes_project 4 86592686 86594879 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014800.1 MGP_C57BL6NJ_G0012845.1 mouse_genomes_project 4 20355792 20356192 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068290.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133134934 133175567 + MGP_C57BL6NJ_P0068290 protein_coding protein_coding MGP_C57BL6NJ_T0068291.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133134994 133138266 + MGP_C57BL6NJ_P0068291 protein_coding protein_coding MGP_C57BL6NJ_T0068292.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133135004 133144149 + protein_coding processed_transcript MGP_C57BL6NJ_T0068293.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133138257 133146585 + MGP_C57BL6NJ_P0068293 protein_coding protein_coding MGP_C57BL6NJ_T0068294.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133146866 133158060 + MGP_C57BL6NJ_P0068294 protein_coding protein_coding MGP_C57BL6NJ_T0068295.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133152726 133155560 + protein_coding processed_transcript MGP_C57BL6NJ_T0068296.1 MGP_C57BL6NJ_G0029207.1 mouse_genomes_project 4 133161630 133173073 + protein_coding processed_transcript MGP_C57BL6NJ_T0015012.1 MGP_C57BL6NJ_G0013057.1 mouse_genomes_project 4 94823597 94824158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100366.1 MGP_C57BL6NJ_G0038412.1 mouse_genomes_project 4 100730728 100730791 + Gm27579 snRNA snRNA MGP_C57BL6NJ_T0069283.1 MGP_C57BL6NJ_G0029417.1 mouse_genomes_project 4 146042742 146050561 + MGP_C57BL6NJ_P0069283 Ddost protein_coding protein_coding MGP_C57BL6NJ_T0065389.1 MGP_C57BL6NJ_G0028526.1 mouse_genomes_project 4 31644585 31645089 + MGP_C57BL6NJ_P0065389 protein_coding protein_coding MGP_C57BL6NJ_T0070355.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165942141 165956802 + MGP_C57BL6NJ_P0070355 Acap3 protein_coding protein_coding MGP_C57BL6NJ_T0070356.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165942194 165956803 + MGP_C57BL6NJ_P0070356 Acap3 protein_coding protein_coding MGP_C57BL6NJ_T0070357.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165942221 165949101 + Acap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070358.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165942591 165949243 + Acap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070359.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165942631 165956803 + Acap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070360.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165951219 165952322 + Acap3 protein_coding retained_intron MGP_C57BL6NJ_T0070361.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165952210 165954662 + Acap3 protein_coding retained_intron MGP_C57BL6NJ_T0070362.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165952872 165954893 + Acap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070363.1 MGP_C57BL6NJ_G0029668.1 mouse_genomes_project 4 165954910 165955469 + Acap3 protein_coding processed_transcript MGP_C57BL6NJ_T0068610.1 MGP_C57BL6NJ_G0029271.1 mouse_genomes_project 4 137200989 137223101 - MGP_C57BL6NJ_P0068610 Serinc2 protein_coding protein_coding MGP_C57BL6NJ_T0068611.1 MGP_C57BL6NJ_G0029271.1 mouse_genomes_project 4 137200989 137222733 - MGP_C57BL6NJ_P0068611 Serinc2 protein_coding protein_coding MGP_C57BL6NJ_T0068612.1 MGP_C57BL6NJ_G0029271.1 mouse_genomes_project 4 137201393 137226706 - MGP_C57BL6NJ_P0068612 Serinc2 protein_coding protein_coding MGP_C57BL6NJ_T0068613.1 MGP_C57BL6NJ_G0029271.1 mouse_genomes_project 4 137210541 137223047 - MGP_C57BL6NJ_P0068613 Serinc2 protein_coding protein_coding MGP_C57BL6NJ_T0068614.1 MGP_C57BL6NJ_G0029271.1 mouse_genomes_project 4 137211156 137223060 - MGP_C57BL6NJ_P0068614 Serinc2 protein_coding protein_coding MGP_C57BL6NJ_T0068901.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141299435 141330933 + MGP_C57BL6NJ_P0068901 Aim1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068902.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141304529 141311283 + MGP_C57BL6NJ_P0068902 Aim1l protein_coding protein_coding MGP_C57BL6NJ_T0068903.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141307009 141331030 + MGP_C57BL6NJ_P0068903 Aim1l protein_coding protein_coding MGP_C57BL6NJ_T0068904.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141317395 141321244 + Aim1l protein_coding processed_transcript MGP_C57BL6NJ_T0068905.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141317476 141326028 + MGP_C57BL6NJ_P0068905 Aim1l protein_coding protein_coding MGP_C57BL6NJ_T0068906.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141320869 141329622 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068907.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141320869 141331027 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068908.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141320872 141328019 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068909.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141320907 141327583 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068910.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141320993 141321446 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068912.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141329340 141330912 + Aim1l protein_coding retained_intron MGP_C57BL6NJ_T0068913.1 MGP_C57BL6NJ_G0029334.1 mouse_genomes_project 4 141329675 141331022 + Aim1l protein_coding processed_transcript MGP_C57BL6NJ_T0068527.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136501925 136503316 - Ccdc28b protein_coding processed_transcript MGP_C57BL6NJ_T0068528.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136501925 136506671 - MGP_C57BL6NJ_P0068528 Ccdc28b protein_coding protein_coding MGP_C57BL6NJ_T0068529.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136501926 136503639 - Ccdc28b protein_coding retained_intron MGP_C57BL6NJ_T0068530.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136501927 136504145 - Ccdc28b protein_coding processed_transcript MGP_C57BL6NJ_T0068531.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136501927 136506561 - MGP_C57BL6NJ_P0068531 Ccdc28b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068532.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136503199 136506602 - MGP_C57BL6NJ_P0068532 Ccdc28b protein_coding protein_coding MGP_C57BL6NJ_T0068533.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136503472 136505449 - Ccdc28b protein_coding processed_transcript MGP_C57BL6NJ_T0068534.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136503726 136506610 - MGP_C57BL6NJ_P0068534 Ccdc28b protein_coding protein_coding MGP_C57BL6NJ_T0068535.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136504885 136506568 - Ccdc28b protein_coding retained_intron MGP_C57BL6NJ_T0068536.1 MGP_C57BL6NJ_G0029258.1 mouse_genomes_project 4 136506021 136506623 - Ccdc28b protein_coding retained_intron MGP_C57BL6NJ_T0069882.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159732582 159741580 + MGP_C57BL6NJ_P0069882 protein_coding protein_coding MGP_C57BL6NJ_T0069883.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159732973 159748326 + MGP_C57BL6NJ_P0069883 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069884.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159733101 159740018 + protein_coding retained_intron MGP_C57BL6NJ_T0069885.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159733101 159742624 + MGP_C57BL6NJ_P0069885 protein_coding protein_coding MGP_C57BL6NJ_T0069886.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159733104 159735797 + protein_coding retained_intron MGP_C57BL6NJ_T0069887.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159733561 159739433 + MGP_C57BL6NJ_P0069887 protein_coding protein_coding MGP_C57BL6NJ_T0069888.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159741525 159746998 + protein_coding retained_intron MGP_C57BL6NJ_T0069889.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159744111 159744843 + protein_coding retained_intron MGP_C57BL6NJ_T0069890.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159744120 159745185 + protein_coding retained_intron MGP_C57BL6NJ_T0069891.1 MGP_C57BL6NJ_G0029583.1 mouse_genomes_project 4 159746502 159747661 + protein_coding retained_intron MGP_C57BL6NJ_T0008056.1 MGP_C57BL6NJ_G0006586.1 mouse_genomes_project 4 86784424 86788545 - Gm11415 lincRNA lincRNA MGP_C57BL6NJ_T0065126.1 MGP_C57BL6NJ_G0028460.1 mouse_genomes_project 4 8217829 8235843 + MGP_C57BL6NJ_P0065126 Trp53inp1 protein_coding protein_coding MGP_C57BL6NJ_T0065127.1 MGP_C57BL6NJ_G0028460.1 mouse_genomes_project 4 8217839 8235843 + Trp53inp1 protein_coding processed_transcript MGP_C57BL6NJ_T0065128.1 MGP_C57BL6NJ_G0028460.1 mouse_genomes_project 4 8217842 8227864 + Trp53inp1 protein_coding processed_transcript MGP_C57BL6NJ_T0065129.1 MGP_C57BL6NJ_G0028460.1 mouse_genomes_project 4 8225922 8229478 + Trp53inp1 protein_coding processed_transcript MGP_C57BL6NJ_T0066289.1 MGP_C57BL6NJ_G0028741.1 mouse_genomes_project 4 58750591 58761693 - MGP_C57BL6NJ_P0066289 D630039A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0015144.1 MGP_C57BL6NJ_G0013189.1 mouse_genomes_project 4 134081299 134081719 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014830.1 MGP_C57BL6NJ_G0012875.1 mouse_genomes_project 4 27598612 27599333 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014782.1 MGP_C57BL6NJ_G0012827.1 mouse_genomes_project 4 14539128 14543131 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004578.1 MGP_C57BL6NJ_G0003984.1 mouse_genomes_project 4 8573196 8574580 - Gm11831 antisense antisense MGP_C57BL6NJ_T0004652.1 MGP_C57BL6NJ_G0004040.1 mouse_genomes_project 4 111052144 111055373 - 2700068H02Rik antisense antisense MGP_C57BL6NJ_T0015066.1 MGP_C57BL6NJ_G0013111.1 mouse_genomes_project 4 113148156 113148538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101696.1 MGP_C57BL6NJ_G0039742.1 mouse_genomes_project 4 122679416 122679495 - Snord55 snoRNA snoRNA MGP_C57BL6NJ_T0066326.1 MGP_C57BL6NJ_G0028749.1 mouse_genomes_project 4 59845240 59861115 + MGP_C57BL6NJ_P0066326 Zkscan16 protein_coding protein_coding MGP_C57BL6NJ_T0015053.1 MGP_C57BL6NJ_G0013098.1 mouse_genomes_project 4 110036034 110036635 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103166.1 MGP_C57BL6NJ_G0040960.1 mouse_genomes_project 4 128769720 128793717 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069318.1 MGP_C57BL6NJ_G0029429.1 mouse_genomes_project 4 146688351 146692577 - MGP_C57BL6NJ_P0069318 Gm13030 protein_coding protein_coding MGP_C57BL6NJ_T0100328.1 MGP_C57BL6NJ_G0038374.1 mouse_genomes_project 4 6151786 6151892 + Gm23423 snRNA snRNA MGP_C57BL6NJ_T0070396.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177762 166195031 + MGP_C57BL6NJ_P0070396 9430015G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0070397.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177765 166195031 + 9430015G10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070398.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177778 166195029 + MGP_C57BL6NJ_P0070398 9430015G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0070399.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177779 166193985 + MGP_C57BL6NJ_P0070399 9430015G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0070400.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177799 166189949 + 9430015G10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070401.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177810 166190183 + 9430015G10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070402.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166177819 166184354 + 9430015G10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070403.1 MGP_C57BL6NJ_G0029676.1 mouse_genomes_project 4 166181672 166187302 + 9430015G10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0007998.1 MGP_C57BL6NJ_G0006537.1 mouse_genomes_project 4 29205854 29343107 + 4930556G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0010814.1 MGP_C57BL6NJ_G0008899.1 mouse_genomes_project 4 13357005 13357097 - Mir6400 miRNA miRNA MGP_C57BL6NJ_T0066007.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45301423 45361657 - Shb protein_coding processed_transcript MGP_C57BL6NJ_T0066008.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45301423 45411733 - MGP_C57BL6NJ_P0066008 Shb protein_coding protein_coding MGP_C57BL6NJ_T0066009.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45322848 45371696 - Shb protein_coding processed_transcript MGP_C57BL6NJ_T0066010.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45325648 45368258 - Shb protein_coding retained_intron MGP_C57BL6NJ_T0066011.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45336271 45368649 - MGP_C57BL6NJ_P0066011 Shb protein_coding protein_coding MGP_C57BL6NJ_T0066012.1 MGP_C57BL6NJ_G0028665.1 mouse_genomes_project 4 45336462 45413873 - MGP_C57BL6NJ_P0066012 Shb protein_coding protein_coding MGP_C57BL6NJ_T0015030.1 MGP_C57BL6NJ_G0013075.1 mouse_genomes_project 4 102281433 102281741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010831.1 MGP_C57BL6NJ_G0008916.1 mouse_genomes_project 4 44419491 44419569 - Mir5120 miRNA miRNA MGP_C57BL6NJ_T0068943.1 MGP_C57BL6NJ_G0029341.1 mouse_genomes_project 4 141498601 141508971 - MGP_C57BL6NJ_P0068943 Cnksr1 protein_coding protein_coding MGP_C57BL6NJ_T0068944.1 MGP_C57BL6NJ_G0029341.1 mouse_genomes_project 4 141498609 141508911 - Cnksr1 protein_coding processed_transcript MGP_C57BL6NJ_T0068945.1 MGP_C57BL6NJ_G0029341.1 mouse_genomes_project 4 141499930 141501003 - Cnksr1 protein_coding processed_transcript MGP_C57BL6NJ_T0068946.1 MGP_C57BL6NJ_G0029341.1 mouse_genomes_project 4 141500992 141503722 - Cnksr1 protein_coding processed_transcript MGP_C57BL6NJ_T0068947.1 MGP_C57BL6NJ_G0029341.1 mouse_genomes_project 4 141503034 141506505 - Cnksr1 protein_coding processed_transcript MGP_C57BL6NJ_T0066842.1 MGP_C57BL6NJ_G0028882.1 mouse_genomes_project 4 100049911 100104118 - MGP_C57BL6NJ_P0066842 Cyp2j11 protein_coding protein_coding MGP_C57BL6NJ_T0004604.1 MGP_C57BL6NJ_G0004004.1 mouse_genomes_project 4 43273243 43296801 + Gm12472 antisense antisense MGP_C57BL6NJ_T0065883.1 MGP_C57BL6NJ_G0028642.1 mouse_genomes_project 4 43486001 43486870 - MGP_C57BL6NJ_P0065883 Olfr159 protein_coding protein_coding MGP_C57BL6NJ_T0008206.1 MGP_C57BL6NJ_G0006699.1 mouse_genomes_project 4 163069707 163070127 + Gm13174 lincRNA lincRNA MGP_C57BL6NJ_T0066950.1 MGP_C57BL6NJ_G0028909.1 mouse_genomes_project 4 105136397 105136796 - MGP_C57BL6NJ_P0066950 Gm10577 protein_coding protein_coding MGP_C57BL6NJ_T0015085.1 MGP_C57BL6NJ_G0013130.1 mouse_genomes_project 4 120707956 120708329 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070414.1 MGP_C57BL6NJ_G0029681.1 mouse_genomes_project 4 166297093 166304180 - MGP_C57BL6NJ_P0070414 Plekhn1 protein_coding protein_coding MGP_C57BL6NJ_T0070415.1 MGP_C57BL6NJ_G0029681.1 mouse_genomes_project 4 166297416 166304129 - MGP_C57BL6NJ_P0070415 Plekhn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069407.1 MGP_C57BL6NJ_G0029452.1 mouse_genomes_project 4 148745823 148762193 - MGP_C57BL6NJ_P0069407 Padi6 protein_coding protein_coding MGP_C57BL6NJ_T0069408.1 MGP_C57BL6NJ_G0029452.1 mouse_genomes_project 4 148750742 148751495 - Padi6 protein_coding processed_transcript MGP_C57BL6NJ_T0069409.1 MGP_C57BL6NJ_G0029452.1 mouse_genomes_project 4 148755250 148761197 - MGP_C57BL6NJ_P0069409 Padi6 protein_coding protein_coding MGP_C57BL6NJ_T0014794.1 MGP_C57BL6NJ_G0012839.1 mouse_genomes_project 4 18837627 18838688 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069642.1 MGP_C57BL6NJ_G0029532.1 mouse_genomes_project 4 155230544 155264210 + MGP_C57BL6NJ_P0069642 protein_coding protein_coding MGP_C57BL6NJ_T0066001.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45272935 45287027 - MGP_C57BL6NJ_P0066001 Slc25a51 protein_coding protein_coding MGP_C57BL6NJ_T0066002.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45272935 45287032 - MGP_C57BL6NJ_P0066002 Slc25a51 protein_coding protein_coding MGP_C57BL6NJ_T0066003.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45277517 45287026 - MGP_C57BL6NJ_P0066003 Slc25a51 protein_coding protein_coding MGP_C57BL6NJ_T0066004.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45277848 45286912 - MGP_C57BL6NJ_P0066004 Slc25a51 protein_coding protein_coding MGP_C57BL6NJ_T0066005.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45277878 45283143 - MGP_C57BL6NJ_P0066005 Slc25a51 protein_coding protein_coding MGP_C57BL6NJ_T0066006.1 MGP_C57BL6NJ_G0028664.1 mouse_genomes_project 4 45285437 45287001 - Slc25a51 protein_coding processed_transcript MGP_C57BL6NJ_T0008070.1 MGP_C57BL6NJ_G0006598.1 mouse_genomes_project 4 97743258 98083617 - lincRNA lincRNA MGP_C57BL6NJ_T0010845.1 MGP_C57BL6NJ_G0008930.1 mouse_genomes_project 4 94832907 94832987 - Mir6402 miRNA miRNA MGP_C57BL6NJ_T0065568.1 MGP_C57BL6NJ_G0028572.1 mouse_genomes_project 4 40873891 40889668 + MGP_C57BL6NJ_P0065568 Nudt2 protein_coding protein_coding MGP_C57BL6NJ_T0015166.1 MGP_C57BL6NJ_G0013211.1 mouse_genomes_project 4 143508010 143508470 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066298.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138838 59231136 + MGP_C57BL6NJ_P0066298 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066299.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231136 + MGP_C57BL6NJ_P0066299 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066300.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231136 + MGP_C57BL6NJ_P0066300 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066301.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231136 + MGP_C57BL6NJ_P0066301 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066302.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231137 + MGP_C57BL6NJ_P0066302 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066303.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231137 + MGP_C57BL6NJ_P0066303 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066304.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59138840 59231137 + MGP_C57BL6NJ_P0066304 Musk protein_coding protein_coding MGP_C57BL6NJ_T0066305.1 MGP_C57BL6NJ_G0028745.1 mouse_genomes_project 4 59139053 59157418 + Musk protein_coding processed_transcript MGP_C57BL6NJ_T0066742.1 MGP_C57BL6NJ_G0028851.1 mouse_genomes_project 4 92035918 92036282 + MGP_C57BL6NJ_P0066742 protein_coding protein_coding MGP_C57BL6NJ_T0066931.1 MGP_C57BL6NJ_G0028903.1 mouse_genomes_project 4 103819998 103898639 - MGP_C57BL6NJ_P0066931 Itgb3bp protein_coding protein_coding MGP_C57BL6NJ_T0066932.1 MGP_C57BL6NJ_G0028903.1 mouse_genomes_project 4 103820498 103972904 - Itgb3bp protein_coding processed_transcript MGP_C57BL6NJ_T0066933.1 MGP_C57BL6NJ_G0028903.1 mouse_genomes_project 4 103821927 103898545 - Itgb3bp protein_coding processed_transcript MGP_C57BL6NJ_T0066934.1 MGP_C57BL6NJ_G0028903.1 mouse_genomes_project 4 103826594 103898587 - Itgb3bp protein_coding processed_transcript MGP_C57BL6NJ_T0066935.1 MGP_C57BL6NJ_G0028903.1 mouse_genomes_project 4 103836557 103898543 - Itgb3bp protein_coding processed_transcript MGP_C57BL6NJ_T0068473.1 MGP_C57BL6NJ_G0029249.1 mouse_genomes_project 4 136357817 136358584 + MGP_C57BL6NJ_P0068473 Fam229a protein_coding protein_coding MGP_C57BL6NJ_T0068474.1 MGP_C57BL6NJ_G0029249.1 mouse_genomes_project 4 136357867 136358584 + Fam229a protein_coding retained_intron MGP_C57BL6NJ_T0069807.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158691765 158802416 - MGP_C57BL6NJ_P0069807 Ube4b protein_coding protein_coding MGP_C57BL6NJ_T0069808.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158691771 158698464 - MGP_C57BL6NJ_P0069808 Ube4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069809.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158692848 158695182 - Ube4b protein_coding processed_transcript MGP_C57BL6NJ_T0069810.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158693025 158801572 - MGP_C57BL6NJ_P0069810 Ube4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069811.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158693025 158801572 - MGP_C57BL6NJ_P0069811 Ube4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069812.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158698551 158699458 - Ube4b protein_coding processed_transcript MGP_C57BL6NJ_T0069813.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158718001 158718979 - Ube4b protein_coding retained_intron MGP_C57BL6NJ_T0069814.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158733766 158802298 - Ube4b protein_coding retained_intron MGP_C57BL6NJ_T0069815.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158754028 158802267 - Ube4b protein_coding processed_transcript MGP_C57BL6NJ_T0069816.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158755983 158756565 - Ube4b protein_coding processed_transcript MGP_C57BL6NJ_T0069817.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158768650 158801883 - Ube4b protein_coding retained_intron MGP_C57BL6NJ_T0069818.1 MGP_C57BL6NJ_G0029568.1 mouse_genomes_project 4 158768662 158769529 - Ube4b protein_coding processed_transcript MGP_C57BL6NJ_T0067803.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123466978 123469992 - MGP_C57BL6NJ_P0067803 Atp6v0b protein_coding protein_coding MGP_C57BL6NJ_T0067804.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123466984 123468549 - Atp6v0b protein_coding retained_intron MGP_C57BL6NJ_T0067805.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123467099 123468455 - Atp6v0b protein_coding retained_intron MGP_C57BL6NJ_T0067806.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123467818 123469291 - Atp6v0b protein_coding retained_intron MGP_C57BL6NJ_T0067807.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123467885 123469213 - MGP_C57BL6NJ_P0067807 Atp6v0b protein_coding protein_coding MGP_C57BL6NJ_T0067808.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123468289 123469942 - MGP_C57BL6NJ_P0067808 Atp6v0b protein_coding protein_coding MGP_C57BL6NJ_T0067809.1 MGP_C57BL6NJ_G0029081.1 mouse_genomes_project 4 123468935 123469988 - MGP_C57BL6NJ_P0067809 Atp6v0b protein_coding protein_coding MGP_C57BL6NJ_T0014815.1 MGP_C57BL6NJ_G0012860.1 mouse_genomes_project 4 24607485 24608212 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065537.1 MGP_C57BL6NJ_G0028565.1 mouse_genomes_project 4 40459118 40464573 - MGP_C57BL6NJ_P0065537 Aqp3 protein_coding protein_coding MGP_C57BL6NJ_T0065538.1 MGP_C57BL6NJ_G0028565.1 mouse_genomes_project 4 40460171 40460838 - Aqp3 protein_coding retained_intron MGP_C57BL6NJ_T0008027.1 MGP_C57BL6NJ_G0006561.1 mouse_genomes_project 4 56111817 56126691 - Gm12510 lincRNA lincRNA MGP_C57BL6NJ_T0010886.1 MGP_C57BL6NJ_G0008971.1 mouse_genomes_project 4 147197593 147197653 + Gm25732 miRNA miRNA MGP_C57BL6NJ_T0015199.1 MGP_C57BL6NJ_G0013244.1 mouse_genomes_project 4 154074272 154074637 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069247.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685396 145816871 + MGP_C57BL6NJ_P0069247 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069248.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685396 145827696 + MGP_C57BL6NJ_P0069248 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069249.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685396 145840128 + MGP_C57BL6NJ_P0069249 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069250.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685830 145930194 + MGP_C57BL6NJ_P0069250 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069251.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685830 145930194 + MGP_C57BL6NJ_P0069251 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069252.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685850 145686525 + Eif4g3 protein_coding processed_transcript MGP_C57BL6NJ_T0069253.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685858 145763637 + Eif4g3 protein_coding processed_transcript MGP_C57BL6NJ_T0069254.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145685887 145929274 + MGP_C57BL6NJ_P0069254 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069255.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145686322 145929274 + MGP_C57BL6NJ_P0069255 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069256.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145698660 145814846 + MGP_C57BL6NJ_P0069256 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069257.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145869266 145931623 + MGP_C57BL6NJ_P0069257 Eif4g3 protein_coding protein_coding MGP_C57BL6NJ_T0069258.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145898087 145931623 + Eif4g3 protein_coding processed_transcript MGP_C57BL6NJ_T0069259.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145900718 145908616 + Eif4g3 protein_coding retained_intron MGP_C57BL6NJ_T0069260.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145904648 145908396 + Eif4g3 protein_coding processed_transcript MGP_C57BL6NJ_T0069261.1 MGP_C57BL6NJ_G0029413.1 mouse_genomes_project 4 145923674 145925555 + Eif4g3 protein_coding processed_transcript MGP_C57BL6NJ_T0015185.1 MGP_C57BL6NJ_G0013230.1 mouse_genomes_project 4 152305638 152307191 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065709.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42643471 42647492 - MGP_C57BL6NJ_P0065709 Stoml2 protein_coding protein_coding MGP_C57BL6NJ_T0065710.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42643807 42645619 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065711.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42643823 42645696 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065712.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42644010 42647238 - MGP_C57BL6NJ_P0065712 Stoml2 protein_coding protein_coding MGP_C57BL6NJ_T0065713.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42644022 42646375 - MGP_C57BL6NJ_P0065713 Stoml2 protein_coding protein_coding MGP_C57BL6NJ_T0065714.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42645345 42647232 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065715.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42645378 42647152 - MGP_C57BL6NJ_P0065715 Stoml2 protein_coding protein_coding MGP_C57BL6NJ_T0065716.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42645396 42646281 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065717.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42645554 42646382 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065718.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42645822 42647140 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0065719.1 MGP_C57BL6NJ_G0028616.1 mouse_genomes_project 4 42646274 42647218 - Stoml2 protein_coding processed_transcript MGP_C57BL6NJ_T0004587.1 MGP_C57BL6NJ_G0003991.1 mouse_genomes_project 4 22830192 22838107 + Gm11899 antisense antisense MGP_C57BL6NJ_T0014977.1 MGP_C57BL6NJ_G0013022.1 mouse_genomes_project 4 79168940 79169977 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066088.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47252505 47367002 + MGP_C57BL6NJ_P0066088 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066089.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47252505 47367006 + MGP_C57BL6NJ_P0066089 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066090.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47252696 47363887 + MGP_C57BL6NJ_P0066090 Col15a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066091.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47277727 47290432 + Col15a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066092.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47305851 47309269 + Col15a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066093.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47306172 47309458 + Col15a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066094.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47336272 47341438 + MGP_C57BL6NJ_P0066094 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066095.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47336284 47367006 + MGP_C57BL6NJ_P0066095 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066096.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47336502 47347464 + MGP_C57BL6NJ_P0066096 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066097.1 MGP_C57BL6NJ_G0028686.1 mouse_genomes_project 4 47351908 47367001 + MGP_C57BL6NJ_P0066097 Col15a1 protein_coding protein_coding MGP_C57BL6NJ_T0066202.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 53995827 54110481 + MGP_C57BL6NJ_P0066202 Slc44a1 protein_coding protein_coding MGP_C57BL6NJ_T0066203.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 53995827 54185334 + MGP_C57BL6NJ_P0066203 Slc44a1 protein_coding protein_coding MGP_C57BL6NJ_T0066204.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 53995999 54128792 + MGP_C57BL6NJ_P0066204 Slc44a1 protein_coding protein_coding MGP_C57BL6NJ_T0066205.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 53996085 54087964 + Slc44a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066206.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 53996098 54124434 + MGP_C57BL6NJ_P0066206 Slc44a1 protein_coding protein_coding MGP_C57BL6NJ_T0066207.1 MGP_C57BL6NJ_G0028720.1 mouse_genomes_project 4 54157055 54184843 + Slc44a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068971.1 MGP_C57BL6NJ_G0029348.1 mouse_genomes_project 4 141628709 141638203 + MGP_C57BL6NJ_P0068971 Slc30a2 protein_coding protein_coding MGP_C57BL6NJ_T0068972.1 MGP_C57BL6NJ_G0029348.1 mouse_genomes_project 4 141628815 141640007 + MGP_C57BL6NJ_P0068972 Slc30a2 protein_coding protein_coding MGP_C57BL6NJ_T0070195.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073653 165142767 + MGP_C57BL6NJ_P0070195 Morn1 protein_coding protein_coding MGP_C57BL6NJ_T0070196.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073653 165102379 + MGP_C57BL6NJ_P0070196 Morn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070197.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073665 165081677 + MGP_C57BL6NJ_P0070197 Morn1 protein_coding protein_coding MGP_C57BL6NJ_T0070198.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073679 165081958 + MGP_C57BL6NJ_P0070198 Morn1 protein_coding protein_coding MGP_C57BL6NJ_T0070199.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073690 165135917 + Morn1 protein_coding processed_transcript MGP_C57BL6NJ_T0070200.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165073704 165135895 + Morn1 protein_coding processed_transcript MGP_C57BL6NJ_T0070201.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165090773 165122944 + Morn1 protein_coding retained_intron MGP_C57BL6NJ_T0070202.1 MGP_C57BL6NJ_G0029638.1 mouse_genomes_project 4 165100887 165122508 + Morn1 protein_coding retained_intron MGP_C57BL6NJ_T0103134.1 MGP_C57BL6NJ_G0040928.1 mouse_genomes_project 4 49498391 49511603 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066440.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64353921 64433066 + Col27a1 protein_coding retained_intron MGP_C57BL6NJ_T0066441.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64355329 64415248 + Col27a1 protein_coding retained_intron MGP_C57BL6NJ_T0066442.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64355352 64475714 + MGP_C57BL6NJ_P0066442 Col27a1 protein_coding protein_coding MGP_C57BL6NJ_T0066443.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64355743 64474031 + MGP_C57BL6NJ_P0066443 Col27a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066444.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64374193 64474436 + MGP_C57BL6NJ_P0066444 Col27a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066445.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64422837 64474443 + MGP_C57BL6NJ_P0066445 Col27a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066446.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64423683 64474472 + Col27a1 protein_coding retained_intron MGP_C57BL6NJ_T0066447.1 MGP_C57BL6NJ_G0028784.1 mouse_genomes_project 4 64471715 64474861 + Col27a1 protein_coding processed_transcript MGP_C57BL6NJ_T0004643.1 MGP_C57BL6NJ_G0004033.1 mouse_genomes_project 4 102246883 102248336 + 0610025J13Rik antisense antisense MGP_C57BL6NJ_T0004644.1 MGP_C57BL6NJ_G0004033.1 mouse_genomes_project 4 102246933 102258590 + 0610025J13Rik antisense antisense MGP_C57BL6NJ_T0004645.1 MGP_C57BL6NJ_G0004033.1 mouse_genomes_project 4 102246933 102258590 + 0610025J13Rik antisense antisense MGP_C57BL6NJ_T0015103.1 MGP_C57BL6NJ_G0013148.1 mouse_genomes_project 4 124111817 124113549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018523.1 MGP_C57BL6NJ_G0015944.1 mouse_genomes_project 4 75737914 75745557 + Gm11240 processed_transcript processed_transcript MGP_C57BL6NJ_T0018531.1 MGP_C57BL6NJ_G0015950.1 mouse_genomes_project 4 98734733 98754765 - Gm12703 processed_transcript processed_transcript MGP_C57BL6NJ_T0065219.1 MGP_C57BL6NJ_G0028483.1 mouse_genomes_project 4 12643614 12665254 + MGP_C57BL6NJ_P0065219 Tmem64 protein_coding protein_coding MGP_C57BL6NJ_T0014806.1 MGP_C57BL6NJ_G0012851.1 mouse_genomes_project 4 22253871 22255073 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015033.1 MGP_C57BL6NJ_G0013078.1 mouse_genomes_project 4 103088067 103088786 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070008.1 MGP_C57BL6NJ_G0029604.1 mouse_genomes_project 4 161858063 161861666 + MGP_C57BL6NJ_P0070008 Hes2 protein_coding protein_coding MGP_C57BL6NJ_T0070009.1 MGP_C57BL6NJ_G0029604.1 mouse_genomes_project 4 161858745 161859797 + Hes2 protein_coding processed_transcript MGP_C57BL6NJ_T0103182.1 MGP_C57BL6NJ_G0040976.1 mouse_genomes_project 4 154051565 156444273 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0065647.1 MGP_C57BL6NJ_G0028599.1 mouse_genomes_project 4 42150932 42155935 + MGP_C57BL6NJ_P0065647 protein_coding protein_coding MGP_C57BL6NJ_T0069459.1 MGP_C57BL6NJ_G0029463.1 mouse_genomes_project 4 149175556 149209649 - Szrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0069460.1 MGP_C57BL6NJ_G0029463.1 mouse_genomes_project 4 149175556 149209649 - Szrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0069461.1 MGP_C57BL6NJ_G0029463.1 mouse_genomes_project 4 149175556 149209640 - MGP_C57BL6NJ_P0069461 Szrd1 protein_coding protein_coding MGP_C57BL6NJ_T0069462.1 MGP_C57BL6NJ_G0029463.1 mouse_genomes_project 4 149175556 149209601 - MGP_C57BL6NJ_P0069462 Szrd1 protein_coding protein_coding MGP_C57BL6NJ_T0069463.1 MGP_C57BL6NJ_G0029463.1 mouse_genomes_project 4 149179122 149209614 - Szrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0065169.1 MGP_C57BL6NJ_G0028468.1 mouse_genomes_project 4 8800075 8811122 + MGP_C57BL6NJ_P0065169 Gem protein_coding protein_coding MGP_C57BL6NJ_T0065170.1 MGP_C57BL6NJ_G0028468.1 mouse_genomes_project 4 8801425 8811122 + MGP_C57BL6NJ_P0065170 Gem protein_coding protein_coding MGP_C57BL6NJ_T0101636.1 MGP_C57BL6NJ_G0039682.1 mouse_genomes_project 4 2380139 2380265 - Gm24337 snoRNA snoRNA MGP_C57BL6NJ_T0069204.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145245519 145257535 + MGP_C57BL6NJ_P0069204 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069205.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145245904 145316030 + MGP_C57BL6NJ_P0069205 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069206.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145245971 145278558 + MGP_C57BL6NJ_P0069206 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069207.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145245971 145316030 + MGP_C57BL6NJ_P0069207 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069208.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145245992 145278558 + MGP_C57BL6NJ_P0069208 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069209.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145271737 145278558 + MGP_C57BL6NJ_P0069209 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069210.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145272994 145276637 + Usp48 protein_coding processed_transcript MGP_C57BL6NJ_T0069211.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145274425 145288770 + Usp48 protein_coding processed_transcript MGP_C57BL6NJ_T0069212.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145276637 145289204 + MGP_C57BL6NJ_P0069212 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069213.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145278429 145316036 + Usp48 protein_coding processed_transcript MGP_C57BL6NJ_T0069214.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145288943 145312754 + MGP_C57BL6NJ_P0069214 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069215.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145289014 145293010 + MGP_C57BL6NJ_P0069215 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069216.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145289418 145310505 + MGP_C57BL6NJ_P0069216 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069217.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145301839 145312747 + MGP_C57BL6NJ_P0069217 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069218.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145301924 145310339 + MGP_C57BL6NJ_P0069218 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069219.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145307799 145313830 + MGP_C57BL6NJ_P0069219 Usp48 protein_coding protein_coding MGP_C57BL6NJ_T0069220.1 MGP_C57BL6NJ_G0029409.1 mouse_genomes_project 4 145314893 145316029 + Usp48 protein_coding processed_transcript MGP_C57BL6NJ_T0068145.1 MGP_C57BL6NJ_G0029171.1 mouse_genomes_project 4 130244440 130244959 - MGP_C57BL6NJ_P0068145 4930535I16Rik protein_coding protein_coding MGP_C57BL6NJ_T0014875.1 MGP_C57BL6NJ_G0012920.1 mouse_genomes_project 4 43358007 43358854 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004616.1 MGP_C57BL6NJ_G0004014.1 mouse_genomes_project 4 52890347 52899372 - Smc2os antisense antisense MGP_C57BL6NJ_T0008200.1 MGP_C57BL6NJ_G0006693.1 mouse_genomes_project 4 159521265 159529121 + Gm13067 lincRNA lincRNA MGP_C57BL6NJ_T0068464.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326458 136355126 + MGP_C57BL6NJ_P0068464 Bsdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068465.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326549 136331872 + Bsdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068466.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326561 136335056 + Bsdc1 protein_coding retained_intron MGP_C57BL6NJ_T0068467.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326561 136331860 + Bsdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068468.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326564 136330845 + Bsdc1 protein_coding retained_intron MGP_C57BL6NJ_T0068469.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136326713 136331872 + MGP_C57BL6NJ_P0068469 Bsdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068470.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136329419 136330424 + Bsdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068471.1 MGP_C57BL6NJ_G0029247.1 mouse_genomes_project 4 136336754 136338794 + Bsdc1 protein_coding retained_intron MGP_C57BL6NJ_T0018578.1 MGP_C57BL6NJ_G0015978.1 mouse_genomes_project 4 165409504 165433914 - 5830444B04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018579.1 MGP_C57BL6NJ_G0015978.1 mouse_genomes_project 4 165419534 165426011 - 5830444B04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018580.1 MGP_C57BL6NJ_G0015978.1 mouse_genomes_project 4 165419535 165433905 - 5830444B04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018581.1 MGP_C57BL6NJ_G0015978.1 mouse_genomes_project 4 165420743 165425990 - 5830444B04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0068277.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132898682 132918295 - MGP_C57BL6NJ_P0068277 Ago3 protein_coding protein_coding MGP_C57BL6NJ_T0068278.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132899710 132999484 - MGP_C57BL6NJ_P0068278 Ago3 protein_coding protein_coding MGP_C57BL6NJ_T0068279.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132913427 132918877 - MGP_C57BL6NJ_P0068279 Ago3 protein_coding protein_coding MGP_C57BL6NJ_T0068280.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132942912 132973749 - Ago3 protein_coding processed_transcript MGP_C57BL6NJ_T0068281.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132967410 132973790 - Ago3 protein_coding processed_transcript MGP_C57BL6NJ_T0068282.1 MGP_C57BL6NJ_G0029204.1 mouse_genomes_project 4 132977150 132999469 - Ago3 protein_coding processed_transcript MGP_C57BL6NJ_T0067155.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111684332 111728705 - MGP_C57BL6NJ_P0067155 Tceanc2 protein_coding protein_coding MGP_C57BL6NJ_T0067156.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111689448 111728524 - MGP_C57BL6NJ_P0067156 Tceanc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067157.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111689503 111728441 - Tceanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0067158.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111689711 111729261 - MGP_C57BL6NJ_P0067158 Tceanc2 protein_coding protein_coding MGP_C57BL6NJ_T0067159.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111689755 111728440 - MGP_C57BL6NJ_P0067159 Tceanc2 protein_coding protein_coding MGP_C57BL6NJ_T0067160.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111689875 111729274 - MGP_C57BL6NJ_P0067160 Tceanc2 protein_coding protein_coding MGP_C57BL6NJ_T0067161.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111715837 111728009 - Tceanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0067162.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111723165 111728366 - Tceanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0067163.1 MGP_C57BL6NJ_G0028954.1 mouse_genomes_project 4 111726773 111727826 - Tceanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0012101.1 MGP_C57BL6NJ_G0010160.1 mouse_genomes_project 4 146643353 146646680 + MGP_C57BL6NJ_P0012101 Pla2g2a polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012102.1 MGP_C57BL6NJ_G0010160.1 mouse_genomes_project 4 146643356 146646683 + MGP_C57BL6NJ_P0012102 Pla2g2a polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012103.1 MGP_C57BL6NJ_G0010160.1 mouse_genomes_project 4 146643372 146645366 + Pla2g2a polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012104.1 MGP_C57BL6NJ_G0010160.1 mouse_genomes_project 4 146644755 146646683 + Pla2g2a polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0069491.1 MGP_C57BL6NJ_G0029472.1 mouse_genomes_project 4 149519406 149522840 - MGP_C57BL6NJ_P0069491 Gm694 protein_coding protein_coding MGP_C57BL6NJ_T0066333.1 MGP_C57BL6NJ_G0028753.1 mouse_genomes_project 4 59947033 59954937 + MGP_C57BL6NJ_P0066333 Gng10 protein_coding protein_coding MGP_C57BL6NJ_T0066334.1 MGP_C57BL6NJ_G0028753.1 mouse_genomes_project 4 59947717 59954937 + Gng10 protein_coding processed_transcript MGP_C57BL6NJ_T0015014.1 MGP_C57BL6NJ_G0013059.1 mouse_genomes_project 4 95284786 95285752 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068139.1 MGP_C57BL6NJ_G0029169.1 mouse_genomes_project 4 130226507 130232669 + MGP_C57BL6NJ_P0068139 Mycbp protein_coding protein_coding MGP_C57BL6NJ_T0068140.1 MGP_C57BL6NJ_G0029169.1 mouse_genomes_project 4 130226597 130232730 + MGP_C57BL6NJ_P0068140 Mycbp protein_coding protein_coding MGP_C57BL6NJ_T0068141.1 MGP_C57BL6NJ_G0029169.1 mouse_genomes_project 4 130226634 130231317 + Mycbp protein_coding processed_transcript MGP_C57BL6NJ_T0068142.1 MGP_C57BL6NJ_G0029169.1 mouse_genomes_project 4 130226729 130232835 + Mycbp protein_coding processed_transcript MGP_C57BL6NJ_T0015216.1 MGP_C57BL6NJ_G0013261.1 mouse_genomes_project 4 159230923 159231064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069614.1 MGP_C57BL6NJ_G0029519.1 mouse_genomes_project 4 152832468 152832777 - MGP_C57BL6NJ_P0069614 Gm9944 protein_coding protein_coding MGP_C57BL6NJ_T0004634.1 MGP_C57BL6NJ_G0004031.1 mouse_genomes_project 4 98679555 98733315 + Gm12694 antisense antisense MGP_C57BL6NJ_T0001543.1 MGP_C57BL6NJ_G0001443.1 mouse_genomes_project 4 9766124 9849157 + TEC TEC MGP_C57BL6NJ_T0014852.1 MGP_C57BL6NJ_G0012897.1 mouse_genomes_project 4 33790022 33790364 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004761.1 MGP_C57BL6NJ_G0004124.1 mouse_genomes_project 4 159358519 159362663 + Gm13070 antisense antisense MGP_C57BL6NJ_T0070311.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165858373 165870422 + MGP_C57BL6NJ_P0070311 Ccnl2 protein_coding protein_coding MGP_C57BL6NJ_T0070312.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165858385 165870422 + Ccnl2 protein_coding retained_intron MGP_C57BL6NJ_T0070313.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165858403 165867751 + Ccnl2 protein_coding retained_intron MGP_C57BL6NJ_T0070314.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165858412 165864730 + MGP_C57BL6NJ_P0070314 Ccnl2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070315.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165858662 165861743 + Ccnl2 protein_coding retained_intron MGP_C57BL6NJ_T0070316.1 MGP_C57BL6NJ_G0029660.1 mouse_genomes_project 4 165859381 165870182 + MGP_C57BL6NJ_P0070316 Ccnl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015219.1 MGP_C57BL6NJ_G0013264.1 mouse_genomes_project 4 159824984 159825240 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014964.1 MGP_C57BL6NJ_G0013009.1 mouse_genomes_project 4 76793698 76794351 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069932.1 MGP_C57BL6NJ_G0029592.1 mouse_genomes_project 4 160647053 160663157 - MGP_C57BL6NJ_P0069932 Vamp3 protein_coding protein_coding MGP_C57BL6NJ_T0069933.1 MGP_C57BL6NJ_G0029592.1 mouse_genomes_project 4 160650162 160663150 - Vamp3 protein_coding retained_intron MGP_C57BL6NJ_T0069934.1 MGP_C57BL6NJ_G0029592.1 mouse_genomes_project 4 160661114 160663167 - Vamp3 protein_coding retained_intron MGP_C57BL6NJ_T0014920.1 MGP_C57BL6NJ_G0012965.1 mouse_genomes_project 4 55794251 55794860 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014838.1 MGP_C57BL6NJ_G0012883.1 mouse_genomes_project 4 30832166 30833111 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100397.1 MGP_C57BL6NJ_G0038443.1 mouse_genomes_project 4 139255512 139255646 - Rnu11 snRNA snRNA MGP_C57BL6NJ_T0069796.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158524660 158669862 - MGP_C57BL6NJ_P0069796 Kif1b protein_coding protein_coding MGP_C57BL6NJ_T0069797.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158526359 158534556 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069798.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158527204 158547713 - MGP_C57BL6NJ_P0069798 Kif1b protein_coding protein_coding MGP_C57BL6NJ_T0069799.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158528577 158669676 - MGP_C57BL6NJ_P0069799 Kif1b protein_coding protein_coding MGP_C57BL6NJ_T0069800.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158556484 158563863 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069801.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158556883 158567555 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069802.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158568735 158577282 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069803.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158588877 158669793 - MGP_C57BL6NJ_P0069803 Kif1b protein_coding protein_coding MGP_C57BL6NJ_T0069804.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158600499 158603123 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069805.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158619617 158669863 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0069806.1 MGP_C57BL6NJ_G0029567.1 mouse_genomes_project 4 158649850 158669834 - Kif1b protein_coding retained_intron MGP_C57BL6NJ_T0066328.1 MGP_C57BL6NJ_G0028751.1 mouse_genomes_project 4 59900282 59926337 + MGP_C57BL6NJ_P0066328 Dnajc25 protein_coding protein_coding MGP_C57BL6NJ_T0066329.1 MGP_C57BL6NJ_G0028751.1 mouse_genomes_project 4 59909350 59930963 + MGP_C57BL6NJ_P0066329 Dnajc25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066330.1 MGP_C57BL6NJ_G0028751.1 mouse_genomes_project 4 59909361 59930963 + MGP_C57BL6NJ_P0066330 Dnajc25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066332.1 MGP_C57BL6NJ_G0028751.1 mouse_genomes_project 4 59909399 59928986 + MGP_C57BL6NJ_P0066332 Dnajc25 protein_coding protein_coding MGP_C57BL6NJ_T0008031.1 MGP_C57BL6NJ_G0006565.1 mouse_genomes_project 4 56940596 56945658 - 2310081O03Rik lincRNA lincRNA MGP_C57BL6NJ_T0067299.1 MGP_C57BL6NJ_G0028978.1 mouse_genomes_project 4 113231380 113235236 - Prpf38a protein_coding processed_transcript MGP_C57BL6NJ_T0067300.1 MGP_C57BL6NJ_G0028978.1 mouse_genomes_project 4 113233078 113247428 - MGP_C57BL6NJ_P0067300 Prpf38a protein_coding protein_coding MGP_C57BL6NJ_T0067301.1 MGP_C57BL6NJ_G0028978.1 mouse_genomes_project 4 113233081 113241893 - Prpf38a protein_coding processed_transcript MGP_C57BL6NJ_T0015088.1 MGP_C57BL6NJ_G0013133.1 mouse_genomes_project 4 121004134 121005226 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098870.1 MGP_C57BL6NJ_G0036934.1 mouse_genomes_project 4 41866522 41867999 + pseudogene pseudogene MGP_C57BL6NJ_T0065546.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40571443 40666021 - MGP_C57BL6NJ_P0065546 Ubap2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065547.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40571451 40666108 - MGP_C57BL6NJ_P0065547 Ubap2 protein_coding protein_coding MGP_C57BL6NJ_T0065548.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40571454 40666099 - MGP_C57BL6NJ_P0065548 Ubap2 protein_coding protein_coding MGP_C57BL6NJ_T0065549.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40572331 40572904 - MGP_C57BL6NJ_P0065549 Ubap2 protein_coding protein_coding MGP_C57BL6NJ_T0065550.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40577834 40583766 - Ubap2 protein_coding processed_transcript MGP_C57BL6NJ_T0065551.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40590583 40597517 - MGP_C57BL6NJ_P0065551 Ubap2 protein_coding protein_coding MGP_C57BL6NJ_T0065552.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40607030 40638929 - MGP_C57BL6NJ_P0065552 Ubap2 protein_coding protein_coding MGP_C57BL6NJ_T0065553.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40607033 40666080 - Ubap2 protein_coding processed_transcript MGP_C57BL6NJ_T0065554.1 MGP_C57BL6NJ_G0028568.1 mouse_genomes_project 4 40665029 40666091 - Ubap2 protein_coding processed_transcript MGP_C57BL6NJ_T0004768.1 MGP_C57BL6NJ_G0004131.1 mouse_genomes_project 4 164499034 164506398 + Gm13133 antisense antisense MGP_C57BL6NJ_T0066945.1 MGP_C57BL6NJ_G0028907.1 mouse_genomes_project 4 104572638 104647378 + MGP_C57BL6NJ_P0066945 Ube2u protein_coding protein_coding MGP_C57BL6NJ_T0066170.1 MGP_C57BL6NJ_G0028707.1 mouse_genomes_project 4 49879269 50076223 - MGP_C57BL6NJ_P0066170 Grin3a protein_coding protein_coding MGP_C57BL6NJ_T0066171.1 MGP_C57BL6NJ_G0028707.1 mouse_genomes_project 4 49879269 50076223 - MGP_C57BL6NJ_P0066171 Grin3a protein_coding protein_coding MGP_C57BL6NJ_T0066173.1 MGP_C57BL6NJ_G0028707.1 mouse_genomes_project 4 49922864 49939387 - Grin3a protein_coding processed_transcript MGP_C57BL6NJ_T0066174.1 MGP_C57BL6NJ_G0028707.1 mouse_genomes_project 4 49986935 50076418 - Grin3a protein_coding processed_transcript MGP_C57BL6NJ_T0068082.1 MGP_C57BL6NJ_G0029155.1 mouse_genomes_project 4 129229416 129277789 + Trit1 protein_coding processed_transcript MGP_C57BL6NJ_T0068083.1 MGP_C57BL6NJ_G0029155.1 mouse_genomes_project 4 129229416 129277789 + MGP_C57BL6NJ_P0068083 Trit1 protein_coding protein_coding MGP_C57BL6NJ_T0068084.1 MGP_C57BL6NJ_G0029155.1 mouse_genomes_project 4 129271595 129277043 + Trit1 protein_coding processed_transcript MGP_C57BL6NJ_T0066449.1 MGP_C57BL6NJ_G0028786.1 mouse_genomes_project 4 64501358 64504708 + MGP_C57BL6NJ_P0066449 Orm3 protein_coding protein_coding MGP_C57BL6NJ_T0066748.1 MGP_C57BL6NJ_G0028857.1 mouse_genomes_project 4 92134848 92135409 + MGP_C57BL6NJ_P0066748 Ifna4 protein_coding protein_coding MGP_C57BL6NJ_T0014902.1 MGP_C57BL6NJ_G0012947.1 mouse_genomes_project 4 52286480 52287719 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066179.1 MGP_C57BL6NJ_G0028711.1 mouse_genomes_project 4 52899649 52956300 + MGP_C57BL6NJ_P0066179 Smc2 protein_coding protein_coding MGP_C57BL6NJ_T0066180.1 MGP_C57BL6NJ_G0028711.1 mouse_genomes_project 4 52899649 52956300 + MGP_C57BL6NJ_P0066180 Smc2 protein_coding protein_coding MGP_C57BL6NJ_T0066181.1 MGP_C57BL6NJ_G0028711.1 mouse_genomes_project 4 52899658 52910592 + Smc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066182.1 MGP_C57BL6NJ_G0028711.1 mouse_genomes_project 4 52899672 52915499 + Smc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066183.1 MGP_C57BL6NJ_G0028711.1 mouse_genomes_project 4 52899675 52922745 + MGP_C57BL6NJ_P0066183 Smc2 protein_coding protein_coding MGP_C57BL6NJ_T0008135.1 MGP_C57BL6NJ_G0006645.1 mouse_genomes_project 4 135636072 135672124 + Gm12968 lincRNA lincRNA MGP_C57BL6NJ_T0068097.1 MGP_C57BL6NJ_G0029160.1 mouse_genomes_project 4 129444949 129459719 + MGP_C57BL6NJ_P0068097 Nt5c1a protein_coding protein_coding MGP_C57BL6NJ_T0010880.1 MGP_C57BL6NJ_G0008965.1 mouse_genomes_project 4 144756367 144756443 + Gm25399 miRNA miRNA MGP_C57BL6NJ_T0067369.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114015558 114120233 + MGP_C57BL6NJ_P0067369 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067370.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114015593 114118103 + MGP_C57BL6NJ_P0067370 Eps15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067371.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114015666 114047947 + MGP_C57BL6NJ_P0067371 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067372.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114015702 114117881 + MGP_C57BL6NJ_P0067372 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067373.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114015702 114117881 + MGP_C57BL6NJ_P0067373 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067374.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114039503 114040966 + Eps15 protein_coding retained_intron MGP_C57BL6NJ_T0067375.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114044189 114048250 + Eps15 protein_coding retained_intron MGP_C57BL6NJ_T0067376.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114078245 114118982 + MGP_C57BL6NJ_P0067376 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067377.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114078439 114098562 + Eps15 protein_coding retained_intron MGP_C57BL6NJ_T0067378.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114102184 114118199 + MGP_C57BL6NJ_P0067378 Eps15 protein_coding protein_coding MGP_C57BL6NJ_T0067379.1 MGP_C57BL6NJ_G0028991.1 mouse_genomes_project 4 114102228 114115274 + Eps15 protein_coding processed_transcript MGP_C57BL6NJ_T0008082.1 MGP_C57BL6NJ_G0006609.1 mouse_genomes_project 4 105490808 105554834 + 0610043K17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008084.1 MGP_C57BL6NJ_G0006609.1 mouse_genomes_project 4 105519387 105544791 + 0610043K17Rik lincRNA lincRNA MGP_C57BL6NJ_T0014867.1 MGP_C57BL6NJ_G0012912.1 mouse_genomes_project 4 39164787 39165742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004593.1 MGP_C57BL6NJ_G0003995.1 mouse_genomes_project 4 38636576 38697488 - Gm17094 antisense antisense MGP_C57BL6NJ_T0101693.1 MGP_C57BL6NJ_G0039739.1 mouse_genomes_project 4 122675713 122675783 - Gm22980 snoRNA snoRNA MGP_C57BL6NJ_T0004700.1 MGP_C57BL6NJ_G0004077.1 mouse_genomes_project 4 135742168 135746161 + Gm15904 antisense antisense MGP_C57BL6NJ_T0004760.1 MGP_C57BL6NJ_G0004123.1 mouse_genomes_project 4 159178166 159179253 + Gm13068 antisense antisense MGP_C57BL6NJ_T0014837.1 MGP_C57BL6NJ_G0012882.1 mouse_genomes_project 4 30773077 30773514 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066154.1 MGP_C57BL6NJ_G0028704.1 mouse_genomes_project 4 49747443 49762423 - MGP_C57BL6NJ_P0066154 Aldob protein_coding protein_coding MGP_C57BL6NJ_T0066155.1 MGP_C57BL6NJ_G0028704.1 mouse_genomes_project 4 49748482 49750315 - Aldob protein_coding processed_transcript MGP_C57BL6NJ_T0066156.1 MGP_C57BL6NJ_G0028704.1 mouse_genomes_project 4 49749985 49751335 - Aldob protein_coding processed_transcript MGP_C57BL6NJ_T0069293.1 MGP_C57BL6NJ_G0029423.1 mouse_genomes_project 4 146337197 146397446 - MGP_C57BL6NJ_P0069293 Vwa5b1 protein_coding protein_coding MGP_C57BL6NJ_T0069294.1 MGP_C57BL6NJ_G0029423.1 mouse_genomes_project 4 146342861 146354679 - MGP_C57BL6NJ_P0069294 Vwa5b1 protein_coding protein_coding MGP_C57BL6NJ_T0069295.1 MGP_C57BL6NJ_G0029423.1 mouse_genomes_project 4 146355225 146410435 - MGP_C57BL6NJ_P0069295 Vwa5b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069296.1 MGP_C57BL6NJ_G0029423.1 mouse_genomes_project 4 146367860 146379941 - Vwa5b1 protein_coding processed_transcript MGP_C57BL6NJ_T0069297.1 MGP_C57BL6NJ_G0029423.1 mouse_genomes_project 4 146373554 146380410 - Vwa5b1 protein_coding processed_transcript MGP_C57BL6NJ_T0004657.1 MGP_C57BL6NJ_G0004045.1 mouse_genomes_project 4 112398539 112403451 - Lrp8os2 antisense antisense MGP_C57BL6NJ_T0004658.1 MGP_C57BL6NJ_G0004045.1 mouse_genomes_project 4 112398539 112416389 - Lrp8os2 antisense antisense MGP_C57BL6NJ_T0004659.1 MGP_C57BL6NJ_G0004045.1 mouse_genomes_project 4 112400494 112416341 - Lrp8os2 antisense antisense MGP_C57BL6NJ_T0004660.1 MGP_C57BL6NJ_G0004045.1 mouse_genomes_project 4 112403310 112416377 - Lrp8os2 antisense antisense MGP_C57BL6NJ_T0008000.1 MGP_C57BL6NJ_G0006539.1 mouse_genomes_project 4 35998780 36036682 + Gm12371 lincRNA lincRNA MGP_C57BL6NJ_T0065250.1 MGP_C57BL6NJ_G0028496.1 mouse_genomes_project 4 17507539 17534830 + MGP_C57BL6NJ_P0065250 Slc7a13 protein_coding protein_coding MGP_C57BL6NJ_T0070147.1 MGP_C57BL6NJ_G0029628.1 mouse_genomes_project 4 164623933 164625368 - MGP_C57BL6NJ_P0070147 Actrt2 protein_coding protein_coding MGP_C57BL6NJ_T0015054.1 MGP_C57BL6NJ_G0013099.1 mouse_genomes_project 4 110589622 110589976 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066988.1 MGP_C57BL6NJ_G0028921.1 mouse_genomes_project 4 106171051 106185095 + MGP_C57BL6NJ_P0066988 Gm12789 protein_coding protein_coding MGP_C57BL6NJ_T0065448.1 MGP_C57BL6NJ_G0028542.1 mouse_genomes_project 4 33568499 33582647 - MGP_C57BL6NJ_P0065448 Gm136 protein_coding protein_coding MGP_C57BL6NJ_T0015162.1 MGP_C57BL6NJ_G0013207.1 mouse_genomes_project 4 143142891 143143369 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014871.1 MGP_C57BL6NJ_G0012916.1 mouse_genomes_project 4 40038934 40039331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103137.1 MGP_C57BL6NJ_G0040931.1 mouse_genomes_project 4 63074852 63077282 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099444.1 MGP_C57BL6NJ_G0037501.1 mouse_genomes_project 4 60055782 60058169 - Gm12594 sense_intronic sense_intronic MGP_C57BL6NJ_T0067900.1 MGP_C57BL6NJ_G0029111.1 mouse_genomes_project 4 124860053 124889326 + MGP_C57BL6NJ_P0067900 Slc2a1 protein_coding protein_coding MGP_C57BL6NJ_T0067901.1 MGP_C57BL6NJ_G0029111.1 mouse_genomes_project 4 124860146 124883943 + MGP_C57BL6NJ_P0067901 Slc2a1 protein_coding protein_coding MGP_C57BL6NJ_T0067902.1 MGP_C57BL6NJ_G0029111.1 mouse_genomes_project 4 124860201 124883915 + MGP_C57BL6NJ_P0067902 Slc2a1 protein_coding protein_coding MGP_C57BL6NJ_T0067903.1 MGP_C57BL6NJ_G0029111.1 mouse_genomes_project 4 124860256 124888673 + MGP_C57BL6NJ_P0067903 Slc2a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001547.1 MGP_C57BL6NJ_G0001447.1 mouse_genomes_project 4 44517721 44520032 + TEC TEC MGP_C57BL6NJ_T0068046.1 MGP_C57BL6NJ_G0029142.1 mouse_genomes_project 4 126874247 126923703 - MGP_C57BL6NJ_P0068046 Smap2 protein_coding protein_coding MGP_C57BL6NJ_T0068047.1 MGP_C57BL6NJ_G0029142.1 mouse_genomes_project 4 126877820 126881639 - Smap2 protein_coding processed_transcript MGP_C57BL6NJ_T0014933.1 MGP_C57BL6NJ_G0012978.1 mouse_genomes_project 4 60008555 60009298 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103174.1 MGP_C57BL6NJ_G0040968.1 mouse_genomes_project 4 151761752 151764413 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066315.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59697015 59813296 - MGP_C57BL6NJ_P0066315 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0066316.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59708733 59709951 - AI314180 protein_coding processed_transcript MGP_C57BL6NJ_T0066317.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59709539 59812477 - MGP_C57BL6NJ_P0066317 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0066318.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59713404 59717702 - AI314180 protein_coding processed_transcript MGP_C57BL6NJ_T0066319.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59717452 59731994 - AI314180 protein_coding processed_transcript MGP_C57BL6NJ_T0066320.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59728483 59812474 - MGP_C57BL6NJ_P0066320 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0066321.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59730635 59732843 - AI314180 protein_coding processed_transcript MGP_C57BL6NJ_T0066322.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59734001 59741963 - AI314180 protein_coding processed_transcript MGP_C57BL6NJ_T0066323.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59741232 59813251 - MGP_C57BL6NJ_P0066323 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0066324.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59758345 59813296 - MGP_C57BL6NJ_P0066324 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0066325.1 MGP_C57BL6NJ_G0028748.1 mouse_genomes_project 4 59766938 59812449 - MGP_C57BL6NJ_P0066325 AI314180 protein_coding protein_coding MGP_C57BL6NJ_T0018565.1 MGP_C57BL6NJ_G0015970.1 mouse_genomes_project 4 138829253 138852188 - Gm12992 processed_transcript processed_transcript MGP_C57BL6NJ_T0018566.1 MGP_C57BL6NJ_G0015970.1 mouse_genomes_project 4 138844574 138847675 - Gm12992 processed_transcript processed_transcript MGP_C57BL6NJ_T0015004.1 MGP_C57BL6NJ_G0013049.1 mouse_genomes_project 4 92484396 92484889 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070187.1 MGP_C57BL6NJ_G0029636.1 mouse_genomes_project 4 165053045 165058463 + MGP_C57BL6NJ_P0070187 Pex10 protein_coding protein_coding MGP_C57BL6NJ_T0070188.1 MGP_C57BL6NJ_G0029636.1 mouse_genomes_project 4 165053083 165054911 + Pex10 protein_coding processed_transcript MGP_C57BL6NJ_T0070189.1 MGP_C57BL6NJ_G0029636.1 mouse_genomes_project 4 165053086 165058211 + Pex10 protein_coding processed_transcript MGP_C57BL6NJ_T0070190.1 MGP_C57BL6NJ_G0029636.1 mouse_genomes_project 4 165053088 165054053 + Pex10 protein_coding processed_transcript MGP_C57BL6NJ_T0070191.1 MGP_C57BL6NJ_G0029636.1 mouse_genomes_project 4 165053088 165055146 + Pex10 protein_coding processed_transcript MGP_C57BL6NJ_T0065969.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44869062 44884174 + MGP_C57BL6NJ_P0065969 Polr1e protein_coding protein_coding MGP_C57BL6NJ_T0065970.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44869141 44882847 + MGP_C57BL6NJ_P0065970 Polr1e protein_coding protein_coding MGP_C57BL6NJ_T0065971.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44869142 44887047 + MGP_C57BL6NJ_P0065971 Polr1e protein_coding protein_coding MGP_C57BL6NJ_T0065972.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44869176 44877350 + Polr1e protein_coding processed_transcript MGP_C57BL6NJ_T0065973.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44869714 44882594 + MGP_C57BL6NJ_P0065973 Polr1e protein_coding protein_coding MGP_C57BL6NJ_T0065974.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44879623 44881867 + Polr1e protein_coding processed_transcript MGP_C57BL6NJ_T0065975.1 MGP_C57BL6NJ_G0028657.1 mouse_genomes_project 4 44881741 44882842 + Polr1e protein_coding processed_transcript MGP_C57BL6NJ_T0014923.1 MGP_C57BL6NJ_G0012968.1 mouse_genomes_project 4 56047870 56048255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069599.1 MGP_C57BL6NJ_G0029509.1 mouse_genomes_project 4 152434246 152439253 - MGP_C57BL6NJ_P0069599 Oog3 protein_coding protein_coding MGP_C57BL6NJ_T0004734.1 MGP_C57BL6NJ_G0004104.1 mouse_genomes_project 4 149988303 149990973 + Ctrcos antisense antisense MGP_C57BL6NJ_T0067953.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125087393 125127000 - Ccdc30 protein_coding retained_intron MGP_C57BL6NJ_T0067954.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125088334 125148333 - MGP_C57BL6NJ_P0067954 Ccdc30 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067955.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125088341 125187760 - MGP_C57BL6NJ_P0067955 Ccdc30 protein_coding protein_coding MGP_C57BL6NJ_T0067956.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125104238 125120390 - Ccdc30 protein_coding retained_intron MGP_C57BL6NJ_T0067957.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125119531 125151903 - MGP_C57BL6NJ_P0067957 Ccdc30 protein_coding protein_coding MGP_C57BL6NJ_T0067958.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125119532 125126793 - Ccdc30 protein_coding processed_transcript MGP_C57BL6NJ_T0067959.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125120479 125161988 - MGP_C57BL6NJ_P0067959 Ccdc30 protein_coding protein_coding MGP_C57BL6NJ_T0067960.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125126904 125144295 - Ccdc30 protein_coding processed_transcript MGP_C57BL6NJ_T0067961.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125134824 125151977 - Ccdc30 protein_coding processed_transcript MGP_C57BL6NJ_T0067962.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125134826 125146259 - Ccdc30 protein_coding retained_intron MGP_C57BL6NJ_T0067963.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125134834 125151903 - MGP_C57BL6NJ_P0067963 Ccdc30 protein_coding protein_coding MGP_C57BL6NJ_T0067964.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125140538 125151889 - Ccdc30 protein_coding retained_intron MGP_C57BL6NJ_T0067965.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125159311 125187562 - MGP_C57BL6NJ_P0067965 Ccdc30 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067966.1 MGP_C57BL6NJ_G0029121.1 mouse_genomes_project 4 125161205 125171593 - Ccdc30 protein_coding processed_transcript MGP_C57BL6NJ_T0067776.1 MGP_C57BL6NJ_G0029077.1 mouse_genomes_project 4 123325431 123338834 - MGP_C57BL6NJ_P0067776 protein_coding protein_coding MGP_C57BL6NJ_T0015015.1 MGP_C57BL6NJ_G0013060.1 mouse_genomes_project 4 95881045 95881343 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004775.1 MGP_C57BL6NJ_G0004136.1 mouse_genomes_project 4 165351448 165352231 + Gm27200 antisense antisense MGP_C57BL6NJ_T0011835.1 MGP_C57BL6NJ_G0009920.1 mouse_genomes_project 4 98094543 98094804 - Gm26410 misc_RNA misc_RNA MGP_C57BL6NJ_T0004778.1 MGP_C57BL6NJ_G0004138.1 mouse_genomes_project 4 165800982 165809060 + Atad3aos antisense antisense MGP_C57BL6NJ_T0004779.1 MGP_C57BL6NJ_G0004138.1 mouse_genomes_project 4 165800996 165802054 + Atad3aos antisense antisense MGP_C57BL6NJ_T0004780.1 MGP_C57BL6NJ_G0004138.1 mouse_genomes_project 4 165801014 165803343 + Atad3aos antisense antisense MGP_C57BL6NJ_T0004781.1 MGP_C57BL6NJ_G0004138.1 mouse_genomes_project 4 165801025 165803354 + Atad3aos antisense antisense MGP_C57BL6NJ_T0004725.1 MGP_C57BL6NJ_G0004097.1 mouse_genomes_project 4 148075690 148077241 + Gm13027 antisense antisense MGP_C57BL6NJ_T0066372.1 MGP_C57BL6NJ_G0028765.1 mouse_genomes_project 4 63143326 63147175 - MGP_C57BL6NJ_P0066372 Mup3 protein_coding protein_coding MGP_C57BL6NJ_T0066373.1 MGP_C57BL6NJ_G0028765.1 mouse_genomes_project 4 63143326 63147122 - MGP_C57BL6NJ_P0066373 Mup3 protein_coding protein_coding MGP_C57BL6NJ_T0066374.1 MGP_C57BL6NJ_G0028765.1 mouse_genomes_project 4 63143329 63147094 - MGP_C57BL6NJ_P0066374 Mup3 protein_coding protein_coding MGP_C57BL6NJ_T0069121.1 MGP_C57BL6NJ_G0029382.1 mouse_genomes_project 4 143414716 143436790 - MGP_C57BL6NJ_P0069121 Tceb3 protein_coding protein_coding MGP_C57BL6NJ_T0067747.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122783834 122811434 + MGP_C57BL6NJ_P0067747 Tmem53 protein_coding protein_coding MGP_C57BL6NJ_T0067748.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122783923 122811368 + MGP_C57BL6NJ_P0067748 Tmem53 protein_coding protein_coding MGP_C57BL6NJ_T0067749.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122783925 122811436 + MGP_C57BL6NJ_P0067749 Tmem53 protein_coding protein_coding MGP_C57BL6NJ_T0067750.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122783945 122810750 + Tmem53 protein_coding processed_transcript MGP_C57BL6NJ_T0067751.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122784223 122811434 + MGP_C57BL6NJ_P0067751 Tmem53 protein_coding protein_coding MGP_C57BL6NJ_T0067752.1 MGP_C57BL6NJ_G0029072.1 mouse_genomes_project 4 122808224 122811436 + Tmem53 protein_coding processed_transcript MGP_C57BL6NJ_T0068059.1 MGP_C57BL6NJ_G0029148.1 mouse_genomes_project 4 127346379 127354718 - MGP_C57BL6NJ_P0068059 Gm12886 protein_coding protein_coding MGP_C57BL6NJ_T0065656.1 MGP_C57BL6NJ_G0028602.1 mouse_genomes_project 4 42229106 42229861 + MGP_C57BL6NJ_P0065656 Ccl27b protein_coding protein_coding MGP_C57BL6NJ_T0065926.1 MGP_C57BL6NJ_G0028652.1 mouse_genomes_project 4 44088948 44153768 + MGP_C57BL6NJ_P0065926 Melk protein_coding protein_coding MGP_C57BL6NJ_T0065927.1 MGP_C57BL6NJ_G0028652.1 mouse_genomes_project 4 44090733 44120225 + MGP_C57BL6NJ_P0065927 Melk protein_coding protein_coding MGP_C57BL6NJ_T0065928.1 MGP_C57BL6NJ_G0028652.1 mouse_genomes_project 4 44091634 44118800 + Melk protein_coding processed_transcript MGP_C57BL6NJ_T0065929.1 MGP_C57BL6NJ_G0028652.1 mouse_genomes_project 4 44091634 44112584 + MGP_C57BL6NJ_P0065929 Melk protein_coding protein_coding MGP_C57BL6NJ_T0069162.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144009321 144092601 + MGP_C57BL6NJ_P0069162 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0069163.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144009321 144092597 + MGP_C57BL6NJ_P0069163 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0069164.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144009363 144062054 + Luzp1 protein_coding retained_intron MGP_C57BL6NJ_T0069165.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144009410 144083949 + MGP_C57BL6NJ_P0069165 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0069166.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144061738 144089676 + MGP_C57BL6NJ_P0069166 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0069167.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144083635 144092600 + MGP_C57BL6NJ_P0069167 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0069168.1 MGP_C57BL6NJ_G0029392.1 mouse_genomes_project 4 144088546 144098062 + MGP_C57BL6NJ_P0069168 Luzp1 protein_coding protein_coding MGP_C57BL6NJ_T0068387.1 MGP_C57BL6NJ_G0029231.1 mouse_genomes_project 4 135559272 135594340 - MGP_C57BL6NJ_P0068387 Zfp362 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068388.1 MGP_C57BL6NJ_G0029231.1 mouse_genomes_project 4 135563277 135594470 - MGP_C57BL6NJ_P0068388 Zfp362 protein_coding protein_coding MGP_C57BL6NJ_T0068389.1 MGP_C57BL6NJ_G0029231.1 mouse_genomes_project 4 135575512 135576284 - Zfp362 protein_coding processed_transcript MGP_C57BL6NJ_T0065595.1 MGP_C57BL6NJ_G0028580.1 mouse_genomes_project 4 41174266 41175768 - MGP_C57BL6NJ_P0065595 Rpp25l protein_coding protein_coding MGP_C57BL6NJ_T0069421.1 MGP_C57BL6NJ_G0029457.1 mouse_genomes_project 4 149004665 149027146 + MGP_C57BL6NJ_P0069421 Sdhb protein_coding protein_coding MGP_C57BL6NJ_T0069422.1 MGP_C57BL6NJ_G0029457.1 mouse_genomes_project 4 149004863 149024749 + Sdhb protein_coding processed_transcript MGP_C57BL6NJ_T0069423.1 MGP_C57BL6NJ_G0029457.1 mouse_genomes_project 4 149004865 149022250 + Sdhb protein_coding processed_transcript MGP_C57BL6NJ_T0008147.1 MGP_C57BL6NJ_G0006652.1 mouse_genomes_project 4 137605387 137609785 - Gm26516 lincRNA lincRNA MGP_C57BL6NJ_T0010865.1 MGP_C57BL6NJ_G0008950.1 mouse_genomes_project 4 136132449 136132531 - Gm22994 miRNA miRNA MGP_C57BL6NJ_T0067449.1 MGP_C57BL6NJ_G0029003.1 mouse_genomes_project 4 116850523 116958401 + MGP_C57BL6NJ_P0067449 Skint7 protein_coding protein_coding MGP_C57BL6NJ_T0067450.1 MGP_C57BL6NJ_G0029003.1 mouse_genomes_project 4 116850527 116955576 + MGP_C57BL6NJ_P0067450 Skint7 protein_coding protein_coding MGP_C57BL6NJ_T0067455.1 MGP_C57BL6NJ_G0029003.1 mouse_genomes_project 4 116957313 116959897 + Skint7 protein_coding retained_intron MGP_C57BL6NJ_T0065399.1 MGP_C57BL6NJ_G0028530.1 mouse_genomes_project 4 31838110 31873699 + MGP_C57BL6NJ_P0065399 Gabrr1 protein_coding protein_coding MGP_C57BL6NJ_T0065850.1 MGP_C57BL6NJ_G0028633.1 mouse_genomes_project 4 43267214 43268493 - MGP_C57BL6NJ_P0065850 Msmp protein_coding protein_coding MGP_C57BL6NJ_T0069620.1 MGP_C57BL6NJ_G0029525.1 mouse_genomes_project 4 153090802 153113322 - MGP_C57BL6NJ_P0069620 Gm13178 protein_coding protein_coding MGP_C57BL6NJ_T0100413.1 MGP_C57BL6NJ_G0038459.1 mouse_genomes_project 4 158901502 158901606 - Gm24381 snRNA snRNA MGP_C57BL6NJ_T0065407.1 MGP_C57BL6NJ_G0028534.1 mouse_genomes_project 4 32030588 32239593 + MGP_C57BL6NJ_P0065407 Rngtt protein_coding protein_coding MGP_C57BL6NJ_T0065408.1 MGP_C57BL6NJ_G0028534.1 mouse_genomes_project 4 32030605 32237893 + MGP_C57BL6NJ_P0065408 Rngtt protein_coding protein_coding MGP_C57BL6NJ_T0065409.1 MGP_C57BL6NJ_G0028534.1 mouse_genomes_project 4 32043919 32047722 + Rngtt protein_coding processed_transcript MGP_C57BL6NJ_T0065410.1 MGP_C57BL6NJ_G0028534.1 mouse_genomes_project 4 32046581 32061970 + Rngtt protein_coding processed_transcript MGP_C57BL6NJ_T0065411.1 MGP_C57BL6NJ_G0028534.1 mouse_genomes_project 4 32053795 32083727 + Rngtt protein_coding processed_transcript MGP_C57BL6NJ_T0070416.1 MGP_C57BL6NJ_G0029682.1 mouse_genomes_project 4 166304681 166310417 - MGP_C57BL6NJ_P0070416 Klhl17 protein_coding protein_coding MGP_C57BL6NJ_T0070417.1 MGP_C57BL6NJ_G0029682.1 mouse_genomes_project 4 166304989 166310867 - MGP_C57BL6NJ_P0070417 Klhl17 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069696.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157375702 157382160 - MGP_C57BL6NJ_P0069696 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069697.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157375702 157381929 - MGP_C57BL6NJ_P0069697 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069698.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157375773 157381934 - MGP_C57BL6NJ_P0069698 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069699.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157375774 157382084 - MGP_C57BL6NJ_P0069699 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069700.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157375995 157382165 - MGP_C57BL6NJ_P0069700 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069701.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157376078 157379722 - MGP_C57BL6NJ_P0069701 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069702.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157376104 157381946 - MGP_C57BL6NJ_P0069702 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0069703.1 MGP_C57BL6NJ_G0029549.1 mouse_genomes_project 4 157379446 157381667 - MGP_C57BL6NJ_P0069703 Fbxo6 protein_coding protein_coding MGP_C57BL6NJ_T0101685.1 MGP_C57BL6NJ_G0039731.1 mouse_genomes_project 4 97166628 97166756 - Gm23443 snoRNA snoRNA MGP_C57BL6NJ_T0069424.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149034622 149054839 + MGP_C57BL6NJ_P0069424 Atp13a2 protein_coding protein_coding MGP_C57BL6NJ_T0069425.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149034649 149057078 + Atp13a2 protein_coding retained_intron MGP_C57BL6NJ_T0069426.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149034739 149045917 + Atp13a2 protein_coding retained_intron MGP_C57BL6NJ_T0069427.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149034816 149057084 + MGP_C57BL6NJ_P0069427 Atp13a2 protein_coding protein_coding MGP_C57BL6NJ_T0069428.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149043351 149051686 + Atp13a2 protein_coding processed_transcript MGP_C57BL6NJ_T0069429.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149043961 149050625 + Atp13a2 protein_coding processed_transcript MGP_C57BL6NJ_T0069430.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149050462 149051842 + Atp13a2 protein_coding processed_transcript MGP_C57BL6NJ_T0069431.1 MGP_C57BL6NJ_G0029458.1 mouse_genomes_project 4 149054168 149056471 + Atp13a2 protein_coding retained_intron MGP_C57BL6NJ_T0100331.1 MGP_C57BL6NJ_G0038377.1 mouse_genomes_project 4 12765915 12766022 + Gm24317 snRNA snRNA MGP_C57BL6NJ_T0014816.1 MGP_C57BL6NJ_G0012861.1 mouse_genomes_project 4 24669524 24669741 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066974.1 MGP_C57BL6NJ_G0028914.1 mouse_genomes_project 4 105813534 105825088 + MGP_C57BL6NJ_P0066974 Leprot protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100338.1 MGP_C57BL6NJ_G0038384.1 mouse_genomes_project 4 32872235 32872343 + Gm25623 snRNA snRNA MGP_C57BL6NJ_T0068564.1 MGP_C57BL6NJ_G0029264.1 mouse_genomes_project 4 136853056 136880491 + MGP_C57BL6NJ_P0068564 Spocd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068565.1 MGP_C57BL6NJ_G0029264.1 mouse_genomes_project 4 136870957 136877061 + MGP_C57BL6NJ_P0068565 Spocd1 protein_coding protein_coding MGP_C57BL6NJ_T0068566.1 MGP_C57BL6NJ_G0029264.1 mouse_genomes_project 4 136871131 136880613 + MGP_C57BL6NJ_P0068566 Spocd1 protein_coding protein_coding MGP_C57BL6NJ_T0070010.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161877993 161995009 + MGP_C57BL6NJ_P0070010 Acot7 protein_coding protein_coding MGP_C57BL6NJ_T0070011.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161885624 161930991 + Acot7 protein_coding processed_transcript MGP_C57BL6NJ_T0070012.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161885993 161995012 + MGP_C57BL6NJ_P0070012 Acot7 protein_coding protein_coding MGP_C57BL6NJ_T0070013.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161886065 161995004 + MGP_C57BL6NJ_P0070013 Acot7 protein_coding protein_coding MGP_C57BL6NJ_T0070014.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161907447 161995004 + MGP_C57BL6NJ_P0070014 Acot7 protein_coding protein_coding MGP_C57BL6NJ_T0070015.1 MGP_C57BL6NJ_G0029605.1 mouse_genomes_project 4 161907505 161931071 + Acot7 protein_coding processed_transcript MGP_C57BL6NJ_T0066172.1 MGP_C57BL6NJ_G0028708.1 mouse_genomes_project 4 49896403 49899681 - MGP_C57BL6NJ_P0066172 Ppp3r2 protein_coding protein_coding MGP_C57BL6NJ_T0015155.1 MGP_C57BL6NJ_G0013200.1 mouse_genomes_project 4 141466360 141466681 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069979.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161781299 161809830 + MGP_C57BL6NJ_P0069979 Plekhg5 protein_coding protein_coding MGP_C57BL6NJ_T0069980.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161791050 161809834 + MGP_C57BL6NJ_P0069980 Plekhg5 protein_coding protein_coding MGP_C57BL6NJ_T0069981.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161791050 161809824 + MGP_C57BL6NJ_P0069981 Plekhg5 protein_coding protein_coding MGP_C57BL6NJ_T0069982.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161798831 161800525 + Plekhg5 protein_coding retained_intron MGP_C57BL6NJ_T0069983.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161802069 161809828 + Plekhg5 protein_coding retained_intron MGP_C57BL6NJ_T0069984.1 MGP_C57BL6NJ_G0029601.1 mouse_genomes_project 4 161802162 161802643 + Plekhg5 protein_coding retained_intron MGP_C57BL6NJ_T0065679.1 MGP_C57BL6NJ_G0028611.1 mouse_genomes_project 4 42555896 42564781 + MGP_C57BL6NJ_P0065679 Dnajb5 protein_coding protein_coding MGP_C57BL6NJ_T0065680.1 MGP_C57BL6NJ_G0028611.1 mouse_genomes_project 4 42555915 42556746 + Dnajb5 protein_coding processed_transcript MGP_C57BL6NJ_T0065681.1 MGP_C57BL6NJ_G0028611.1 mouse_genomes_project 4 42556352 42564775 + Dnajb5 protein_coding retained_intron MGP_C57BL6NJ_T0065682.1 MGP_C57BL6NJ_G0028611.1 mouse_genomes_project 4 42556441 42559304 + Dnajb5 protein_coding processed_transcript MGP_C57BL6NJ_T0065683.1 MGP_C57BL6NJ_G0028611.1 mouse_genomes_project 4 42559095 42564766 + MGP_C57BL6NJ_P0065683 Dnajb5 protein_coding protein_coding MGP_C57BL6NJ_T0069786.1 MGP_C57BL6NJ_G0029565.1 mouse_genomes_project 4 158462311 158472724 - MGP_C57BL6NJ_P0069786 Apitd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069787.1 MGP_C57BL6NJ_G0029565.1 mouse_genomes_project 4 158463737 158465647 - Apitd1 protein_coding retained_intron MGP_C57BL6NJ_T0069788.1 MGP_C57BL6NJ_G0029565.1 mouse_genomes_project 4 158463963 158472699 - MGP_C57BL6NJ_P0069788 Apitd1 protein_coding protein_coding MGP_C57BL6NJ_T0069789.1 MGP_C57BL6NJ_G0029565.1 mouse_genomes_project 4 158463966 158472741 - MGP_C57BL6NJ_P0069789 Apitd1 protein_coding protein_coding MGP_C57BL6NJ_T0069790.1 MGP_C57BL6NJ_G0029565.1 mouse_genomes_project 4 158466544 158472753 - MGP_C57BL6NJ_P0069790 Apitd1 protein_coding protein_coding MGP_C57BL6NJ_T0008081.1 MGP_C57BL6NJ_G0006608.1 mouse_genomes_project 4 105482519 105493264 - E130102H24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008083.1 MGP_C57BL6NJ_G0006608.1 mouse_genomes_project 4 105493057 105493751 - E130102H24Rik lincRNA lincRNA MGP_C57BL6NJ_T0065635.1 MGP_C57BL6NJ_G0028590.1 mouse_genomes_project 4 41242806 42442478 + MGP_C57BL6NJ_P0065635 4930578G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0065636.1 MGP_C57BL6NJ_G0028590.1 mouse_genomes_project 4 41242831 42442730 + MGP_C57BL6NJ_P0065636 4930578G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0018513.1 MGP_C57BL6NJ_G0015938.1 mouse_genomes_project 4 46512537 46516441 + Gm16731 processed_transcript processed_transcript MGP_C57BL6NJ_T0067512.1 MGP_C57BL6NJ_G0029024.1 mouse_genomes_project 4 120796271 120806214 - MGP_C57BL6NJ_P0067512 Cyp4a14 protein_coding protein_coding MGP_C57BL6NJ_T0067513.1 MGP_C57BL6NJ_G0029024.1 mouse_genomes_project 4 120804135 120806212 - Cyp4a14 protein_coding processed_transcript MGP_C57BL6NJ_T0065661.1 MGP_C57BL6NJ_G0028604.1 mouse_genomes_project 4 42290864 42292242 - MGP_C57BL6NJ_P0065661 Gm3893 protein_coding protein_coding MGP_C57BL6NJ_T0068938.1 MGP_C57BL6NJ_G0029339.1 mouse_genomes_project 4 141457334 141469537 - MGP_C57BL6NJ_P0068938 Gm7534 protein_coding protein_coding MGP_C57BL6NJ_T0015174.1 MGP_C57BL6NJ_G0013219.1 mouse_genomes_project 4 147206942 147207823 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004618.1 MGP_C57BL6NJ_G0004016.1 mouse_genomes_project 4 54123966 54125681 - 1700060J05Rik antisense antisense MGP_C57BL6NJ_T0066486.1 MGP_C57BL6NJ_G0028798.1 mouse_genomes_project 4 66661777 67754783 - MGP_C57BL6NJ_P0066486 Astn2 protein_coding protein_coding MGP_C57BL6NJ_T0066487.1 MGP_C57BL6NJ_G0028798.1 mouse_genomes_project 4 66661777 67754655 - MGP_C57BL6NJ_P0066487 Astn2 protein_coding protein_coding MGP_C57BL6NJ_T0066435.1 MGP_C57BL6NJ_G0028783.1 mouse_genomes_project 4 64303269 64309697 - Kif12 protein_coding processed_transcript MGP_C57BL6NJ_T0066436.1 MGP_C57BL6NJ_G0028783.1 mouse_genomes_project 4 64303272 64309782 - MGP_C57BL6NJ_P0066436 Kif12 protein_coding protein_coding MGP_C57BL6NJ_T0066437.1 MGP_C57BL6NJ_G0028783.1 mouse_genomes_project 4 64305112 64308433 - Kif12 protein_coding processed_transcript MGP_C57BL6NJ_T0066438.1 MGP_C57BL6NJ_G0028783.1 mouse_genomes_project 4 64305364 64308825 - Kif12 protein_coding processed_transcript MGP_C57BL6NJ_T0066439.1 MGP_C57BL6NJ_G0028783.1 mouse_genomes_project 4 64307042 64309381 - Kif12 protein_coding processed_transcript MGP_C57BL6NJ_T0068863.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140840527 140921517 - MGP_C57BL6NJ_P0068863 Arid1a protein_coding protein_coding MGP_C57BL6NJ_T0068864.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140840527 140921517 - MGP_C57BL6NJ_P0068864 Arid1a protein_coding protein_coding MGP_C57BL6NJ_T0068865.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140841460 140924164 - MGP_C57BL6NJ_P0068865 Arid1a protein_coding protein_coding MGP_C57BL6NJ_T0068866.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140850985 140884884 - Arid1a protein_coding retained_intron MGP_C57BL6NJ_T0068867.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140881190 140882607 - Arid1a protein_coding retained_intron MGP_C57BL6NJ_T0068868.1 MGP_C57BL6NJ_G0029328.1 mouse_genomes_project 4 140882609 140885708 - MGP_C57BL6NJ_P0068868 Arid1a protein_coding protein_coding MGP_C57BL6NJ_T0067843.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 123975964 124029388 - MGP_C57BL6NJ_P0067843 Szt2 protein_coding protein_coding MGP_C57BL6NJ_T0067844.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 123975968 123989748 - MGP_C57BL6NJ_P0067844 Szt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067845.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 123976628 123978288 - Szt2 protein_coding processed_transcript MGP_C57BL6NJ_T0067846.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 123981974 123982861 - Szt2 protein_coding retained_intron MGP_C57BL6NJ_T0067847.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 123988146 123989299 - Szt2 protein_coding retained_intron MGP_C57BL6NJ_T0067848.1 MGP_C57BL6NJ_G0029088.1 mouse_genomes_project 4 124006261 124007062 - Szt2 protein_coding processed_transcript MGP_C57BL6NJ_T0068236.1 MGP_C57BL6NJ_G0029197.1 mouse_genomes_project 4 132689300 132701322 - Sh3d21 protein_coding processed_transcript MGP_C57BL6NJ_T0068237.1 MGP_C57BL6NJ_G0029197.1 mouse_genomes_project 4 132689300 132701283 - MGP_C57BL6NJ_P0068237 Sh3d21 protein_coding protein_coding MGP_C57BL6NJ_T0068238.1 MGP_C57BL6NJ_G0029197.1 mouse_genomes_project 4 132689300 132702148 - MGP_C57BL6NJ_P0068238 Sh3d21 protein_coding protein_coding MGP_C57BL6NJ_T0068239.1 MGP_C57BL6NJ_G0029197.1 mouse_genomes_project 4 132689306 132701258 - Sh3d21 protein_coding processed_transcript MGP_C57BL6NJ_T0068240.1 MGP_C57BL6NJ_G0029197.1 mouse_genomes_project 4 132690255 132701313 - Sh3d21 protein_coding processed_transcript MGP_C57BL6NJ_T0065294.1 MGP_C57BL6NJ_G0028506.1 mouse_genomes_project 4 19668811 19709692 + MGP_C57BL6NJ_P0065294 Coq3 protein_coding protein_coding MGP_C57BL6NJ_T0065295.1 MGP_C57BL6NJ_G0028506.1 mouse_genomes_project 4 19696107 19697841 + Coq3 protein_coding processed_transcript MGP_C57BL6NJ_T0069836.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159063837 159127379 - MGP_C57BL6NJ_P0069836 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069837.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159063837 159127369 - MGP_C57BL6NJ_P0069837 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069838.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159063839 159094139 - MGP_C57BL6NJ_P0069838 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069839.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159063839 159130261 - MGP_C57BL6NJ_P0069839 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069840.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159063840 159095989 - MGP_C57BL6NJ_P0069840 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069841.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159064486 159127276 - MGP_C57BL6NJ_P0069841 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069842.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159065309 159080094 - MGP_C57BL6NJ_P0069842 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069843.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159076713 159095131 - MGP_C57BL6NJ_P0069843 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069844.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159076792 159095570 - MGP_C57BL6NJ_P0069844 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069845.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159076954 159127275 - MGP_C57BL6NJ_P0069845 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069846.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159077119 159127223 - MGP_C57BL6NJ_P0069846 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069847.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159079962 159131242 - MGP_C57BL6NJ_P0069847 Pik3cd protein_coding protein_coding MGP_C57BL6NJ_T0069848.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159093383 159096038 - Pik3cd protein_coding processed_transcript MGP_C57BL6NJ_T0069849.1 MGP_C57BL6NJ_G0029574.1 mouse_genomes_project 4 159093709 159130261 - Pik3cd protein_coding processed_transcript MGP_C57BL6NJ_T0014909.1 MGP_C57BL6NJ_G0012954.1 mouse_genomes_project 4 53330840 53331481 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008077.1 MGP_C57BL6NJ_G0006604.1 mouse_genomes_project 4 103697943 103699320 - Gm12688 lincRNA lincRNA MGP_C57BL6NJ_T0100363.1 MGP_C57BL6NJ_G0038409.1 mouse_genomes_project 4 96431355 96431463 - Gm22605 snRNA snRNA MGP_C57BL6NJ_T0065226.1 MGP_C57BL6NJ_G0028486.1 mouse_genomes_project 4 13373480 13410714 + MGP_C57BL6NJ_P0065226 Nbn protein_coding protein_coding MGP_C57BL6NJ_T0065227.1 MGP_C57BL6NJ_G0028486.1 mouse_genomes_project 4 13373522 13399485 + MGP_C57BL6NJ_P0065227 Nbn protein_coding protein_coding MGP_C57BL6NJ_T0015176.1 MGP_C57BL6NJ_G0013221.1 mouse_genomes_project 4 149438992 149439196 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069017.1 MGP_C57BL6NJ_G0029360.1 mouse_genomes_project 4 142229819 142254660 - MGP_C57BL6NJ_P0069017 Tmem50a protein_coding protein_coding MGP_C57BL6NJ_T0069018.1 MGP_C57BL6NJ_G0029360.1 mouse_genomes_project 4 142230361 142254651 - MGP_C57BL6NJ_P0069018 Tmem50a protein_coding protein_coding MGP_C57BL6NJ_T0065137.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8260614 8319764 - MGP_C57BL6NJ_P0065137 Ints8 protein_coding protein_coding MGP_C57BL6NJ_T0065138.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8265557 8276195 - Ints8 protein_coding processed_transcript MGP_C57BL6NJ_T0065139.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8265828 8298565 - Ints8 protein_coding processed_transcript MGP_C57BL6NJ_T0065140.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8265830 8319764 - MGP_C57BL6NJ_P0065140 Ints8 protein_coding protein_coding MGP_C57BL6NJ_T0065141.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8265830 8319764 - MGP_C57BL6NJ_P0065141 Ints8 protein_coding protein_coding MGP_C57BL6NJ_T0065142.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8265831 8276762 - Ints8 protein_coding processed_transcript MGP_C57BL6NJ_T0065143.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8270202 8282912 - Ints8 protein_coding processed_transcript MGP_C57BL6NJ_T0065144.1 MGP_C57BL6NJ_G0028462.1 mouse_genomes_project 4 8295574 8298975 - Ints8 protein_coding processed_transcript MGP_C57BL6NJ_T0068338.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133696663 133765619 + MGP_C57BL6NJ_P0068338 Zmym6 protein_coding protein_coding MGP_C57BL6NJ_T0068339.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133696677 133765621 + MGP_C57BL6NJ_P0068339 Zmym6 protein_coding protein_coding MGP_C57BL6NJ_T0068340.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133696722 133736131 + Zmym6 protein_coding processed_transcript MGP_C57BL6NJ_T0068341.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133697571 133710065 + Zmym6 protein_coding processed_transcript MGP_C57BL6NJ_T0068342.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133706881 133710208 + Zmym6 protein_coding processed_transcript MGP_C57BL6NJ_T0068343.1 MGP_C57BL6NJ_G0029216.1 mouse_genomes_project 4 133732520 133736009 + Zmym6 protein_coding processed_transcript MGP_C57BL6NJ_T0070085.1 MGP_C57BL6NJ_G0029618.1 mouse_genomes_project 4 163910271 163921510 + MGP_C57BL6NJ_P0070085 Lrrc47 protein_coding protein_coding MGP_C57BL6NJ_T0070086.1 MGP_C57BL6NJ_G0029618.1 mouse_genomes_project 4 163910343 163921509 + MGP_C57BL6NJ_P0070086 Lrrc47 protein_coding protein_coding MGP_C57BL6NJ_T0070087.1 MGP_C57BL6NJ_G0029618.1 mouse_genomes_project 4 163915954 163919067 + Lrrc47 protein_coding retained_intron MGP_C57BL6NJ_T0070088.1 MGP_C57BL6NJ_G0029618.1 mouse_genomes_project 4 163918949 163920888 + MGP_C57BL6NJ_P0070088 Lrrc47 protein_coding protein_coding MGP_C57BL6NJ_T0070089.1 MGP_C57BL6NJ_G0029618.1 mouse_genomes_project 4 163919635 163920664 + MGP_C57BL6NJ_P0070089 Lrrc47 protein_coding protein_coding MGP_C57BL6NJ_T0100343.1 MGP_C57BL6NJ_G0038389.1 mouse_genomes_project 4 40407807 40407914 + Gm25637 snRNA snRNA MGP_C57BL6NJ_T0100361.1 MGP_C57BL6NJ_G0038407.1 mouse_genomes_project 4 89063129 89063230 - Gm25811 snRNA snRNA MGP_C57BL6NJ_T0068001.1 MGP_C57BL6NJ_G0029130.1 mouse_genomes_project 4 125978554 125984757 + MGP_C57BL6NJ_P0068001 Edn2 protein_coding protein_coding MGP_C57BL6NJ_T0015036.1 MGP_C57BL6NJ_G0013081.1 mouse_genomes_project 4 103434412 103435411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069288.1 MGP_C57BL6NJ_G0029420.1 mouse_genomes_project 4 146145011 146147448 - MGP_C57BL6NJ_P0069288 Fam43b protein_coding protein_coding MGP_C57BL6NJ_T0010855.1 MGP_C57BL6NJ_G0008940.1 mouse_genomes_project 4 123813846 123813906 - Mir7226 miRNA miRNA MGP_C57BL6NJ_T0015206.1 MGP_C57BL6NJ_G0013251.1 mouse_genomes_project 4 156212621 156213368 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015002.1 MGP_C57BL6NJ_G0013047.1 mouse_genomes_project 4 91382998 91383273 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008114.1 MGP_C57BL6NJ_G0006633.1 mouse_genomes_project 4 130657056 130664803 - Gm12916 lincRNA lincRNA MGP_C57BL6NJ_T0065151.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8399765 8454483 - MGP_C57BL6NJ_P0065151 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065152.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8399765 8454587 - MGP_C57BL6NJ_P0065152 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065153.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8399870 8454587 - MGP_C57BL6NJ_P0065153 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065154.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8400837 8454483 - MGP_C57BL6NJ_P0065154 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065155.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8400837 8434959 - MGP_C57BL6NJ_P0065155 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065156.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8408386 8412003 - Esrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0065157.1 MGP_C57BL6NJ_G0028464.1 mouse_genomes_project 4 8425354 8454198 - MGP_C57BL6NJ_P0065157 Esrp1 protein_coding protein_coding MGP_C57BL6NJ_T0065324.1 MGP_C57BL6NJ_G0028512.1 mouse_genomes_project 4 22941239 22948140 + MGP_C57BL6NJ_P0065324 Ndufaf4 protein_coding protein_coding MGP_C57BL6NJ_T0065325.1 MGP_C57BL6NJ_G0028512.1 mouse_genomes_project 4 22941287 22946644 + Ndufaf4 protein_coding processed_transcript MGP_C57BL6NJ_T0065326.1 MGP_C57BL6NJ_G0028512.1 mouse_genomes_project 4 22941332 22946624 + MGP_C57BL6NJ_P0065326 Ndufaf4 protein_coding protein_coding MGP_C57BL6NJ_T0069704.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157382824 157389677 - MGP_C57BL6NJ_P0069704 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0069705.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157382827 157390176 - MGP_C57BL6NJ_P0069705 Fbxo44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069706.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157382827 157390165 - MGP_C57BL6NJ_P0069706 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0069707.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157383291 157389959 - MGP_C57BL6NJ_P0069707 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0069708.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157383561 157388639 - MGP_C57BL6NJ_P0069708 Fbxo44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069709.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157383596 157389731 - MGP_C57BL6NJ_P0069709 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0069710.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157383596 157389957 - MGP_C57BL6NJ_P0069710 Fbxo44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069711.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157385522 157389933 - MGP_C57BL6NJ_P0069711 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0069712.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157386170 157389931 - MGP_C57BL6NJ_P0069712 Fbxo44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069713.1 MGP_C57BL6NJ_G0029550.1 mouse_genomes_project 4 157386190 157390564 - MGP_C57BL6NJ_P0069713 Fbxo44 protein_coding protein_coding MGP_C57BL6NJ_T0067307.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113287645 113303218 + MGP_C57BL6NJ_P0067307 Cc2d1b protein_coding protein_coding MGP_C57BL6NJ_T0067308.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113291216 113293711 + MGP_C57BL6NJ_P0067308 Cc2d1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067309.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113293459 113294467 + Cc2d1b protein_coding retained_intron MGP_C57BL6NJ_T0067310.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113293724 113294808 + Cc2d1b protein_coding retained_intron MGP_C57BL6NJ_T0067311.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113293752 113301810 + Cc2d1b protein_coding retained_intron MGP_C57BL6NJ_T0067312.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113297294 113298107 + Cc2d1b protein_coding retained_intron MGP_C57BL6NJ_T0067313.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113297328 113298138 + Cc2d1b protein_coding processed_transcript MGP_C57BL6NJ_T0067314.1 MGP_C57BL6NJ_G0028980.1 mouse_genomes_project 4 113298154 113300968 + Cc2d1b protein_coding retained_intron MGP_C57BL6NJ_T0103171.1 MGP_C57BL6NJ_G0040965.1 mouse_genomes_project 4 147203800 147204951 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015040.1 MGP_C57BL6NJ_G0013085.1 mouse_genomes_project 4 104669738 104670666 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100334.1 MGP_C57BL6NJ_G0038380.1 mouse_genomes_project 4 23957988 23958091 - Gm24042 snRNA snRNA MGP_C57BL6NJ_T0066341.1 MGP_C57BL6NJ_G0028756.1 mouse_genomes_project 4 60253173 60381514 - MGP_C57BL6NJ_P0066341 Susd1 protein_coding protein_coding MGP_C57BL6NJ_T0066342.1 MGP_C57BL6NJ_G0028756.1 mouse_genomes_project 4 60256339 60257623 - Susd1 protein_coding retained_intron MGP_C57BL6NJ_T0066343.1 MGP_C57BL6NJ_G0028756.1 mouse_genomes_project 4 60256339 60381824 - MGP_C57BL6NJ_P0066343 Susd1 protein_coding protein_coding MGP_C57BL6NJ_T0066344.1 MGP_C57BL6NJ_G0028756.1 mouse_genomes_project 4 60270852 60274665 - Susd1 protein_coding retained_intron MGP_C57BL6NJ_T0066345.1 MGP_C57BL6NJ_G0028756.1 mouse_genomes_project 4 60273599 60301114 - Susd1 protein_coding retained_intron MGP_C57BL6NJ_T0004669.1 MGP_C57BL6NJ_G0004051.1 mouse_genomes_project 4 120394632 120399276 + Cyp4x1os antisense antisense MGP_C57BL6NJ_T0066145.1 MGP_C57BL6NJ_G0028700.1 mouse_genomes_project 4 49639823 49654930 - MGP_C57BL6NJ_P0066145 Acnat2 protein_coding protein_coding MGP_C57BL6NJ_T0066146.1 MGP_C57BL6NJ_G0028700.1 mouse_genomes_project 4 49648959 49654930 - Acnat2 protein_coding processed_transcript MGP_C57BL6NJ_T0067084.1 MGP_C57BL6NJ_G0028940.1 mouse_genomes_project 4 110936674 110958284 - MGP_C57BL6NJ_P0067084 Pcsk9 protein_coding protein_coding MGP_C57BL6NJ_T0008069.1 MGP_C57BL6NJ_G0006597.1 mouse_genomes_project 4 97060635 97298189 - Gm12649 lincRNA lincRNA MGP_C57BL6NJ_T0069189.1 MGP_C57BL6NJ_G0029399.1 mouse_genomes_project 4 144466890 144469777 - MGP_C57BL6NJ_P0069189 C1qa protein_coding protein_coding MGP_C57BL6NJ_T0102255.1 MGP_C57BL6NJ_G0040245.1 mouse_genomes_project 4 155799446 155801553 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0100336.1 MGP_C57BL6NJ_G0038382.1 mouse_genomes_project 4 29742182 29742286 - Gm25705 snRNA snRNA MGP_C57BL6NJ_T0015007.1 MGP_C57BL6NJ_G0013052.1 mouse_genomes_project 4 93762195 93763187 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015098.1 MGP_C57BL6NJ_G0013143.1 mouse_genomes_project 4 123067423 123067802 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103129.1 MGP_C57BL6NJ_G0040923.1 mouse_genomes_project 4 42291251 42446715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069649.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157064991 157072940 - MGP_C57BL6NJ_P0069649 Miip protein_coding protein_coding MGP_C57BL6NJ_T0069650.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157064999 157073037 - MGP_C57BL6NJ_P0069650 Miip protein_coding protein_coding MGP_C57BL6NJ_T0069651.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157065003 157066996 - Miip protein_coding retained_intron MGP_C57BL6NJ_T0069652.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157065004 157072720 - Miip protein_coding retained_intron MGP_C57BL6NJ_T0069653.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157065004 157072704 - MGP_C57BL6NJ_P0069653 Miip protein_coding protein_coding MGP_C57BL6NJ_T0069654.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157067033 157072887 - Miip protein_coding retained_intron MGP_C57BL6NJ_T0069655.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157067786 157069758 - Miip protein_coding retained_intron MGP_C57BL6NJ_T0069656.1 MGP_C57BL6NJ_G0029537.1 mouse_genomes_project 4 157070343 157072744 - Miip protein_coding retained_intron MGP_C57BL6NJ_T0014894.1 MGP_C57BL6NJ_G0012939.1 mouse_genomes_project 4 49527408 49528414 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067280.1 MGP_C57BL6NJ_G0028974.1 mouse_genomes_project 4 112966786 112980300 + MGP_C57BL6NJ_P0067280 Coa7 protein_coding protein_coding MGP_C57BL6NJ_T0067281.1 MGP_C57BL6NJ_G0028974.1 mouse_genomes_project 4 112966799 112977207 + Coa7 protein_coding processed_transcript MGP_C57BL6NJ_T0067282.1 MGP_C57BL6NJ_G0028974.1 mouse_genomes_project 4 112966802 112977439 + Coa7 protein_coding processed_transcript MGP_C57BL6NJ_T0067283.1 MGP_C57BL6NJ_G0028974.1 mouse_genomes_project 4 112966824 112976934 + Coa7 protein_coding processed_transcript MGP_C57BL6NJ_T0067284.1 MGP_C57BL6NJ_G0028974.1 mouse_genomes_project 4 112966835 112971282 + Coa7 protein_coding processed_transcript MGP_C57BL6NJ_T0099104.1 MGP_C57BL6NJ_G0037168.1 mouse_genomes_project 4 85264100 85264205 + n-R5s188 rRNA rRNA MGP_C57BL6NJ_T0010874.1 MGP_C57BL6NJ_G0008959.1 mouse_genomes_project 4 140878880 140878939 - Mir7227 miRNA miRNA MGP_C57BL6NJ_T0069132.1 MGP_C57BL6NJ_G0029384.1 mouse_genomes_project 4 143590385 143592281 + MGP_C57BL6NJ_P0069132 Id3 protein_coding protein_coding MGP_C57BL6NJ_T0069133.1 MGP_C57BL6NJ_G0029384.1 mouse_genomes_project 4 143590752 143591605 + Id3 protein_coding retained_intron MGP_C57BL6NJ_T0069134.1 MGP_C57BL6NJ_G0029384.1 mouse_genomes_project 4 143591862 143592644 + Id3 protein_coding processed_transcript MGP_C57BL6NJ_T0069386.1 MGP_C57BL6NJ_G0029447.1 mouse_genomes_project 4 147646668 147761342 - MGP_C57BL6NJ_P0069386 Pax7 protein_coding protein_coding MGP_C57BL6NJ_T0069387.1 MGP_C57BL6NJ_G0029447.1 mouse_genomes_project 4 147650114 147760842 - MGP_C57BL6NJ_P0069387 Pax7 protein_coding protein_coding MGP_C57BL6NJ_T0065404.1 MGP_C57BL6NJ_G0028533.1 mouse_genomes_project 4 31959982 31963070 - MGP_C57BL6NJ_P0065404 Pnrc1 protein_coding protein_coding MGP_C57BL6NJ_T0065405.1 MGP_C57BL6NJ_G0028533.1 mouse_genomes_project 4 31960563 31962135 - Pnrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0065406.1 MGP_C57BL6NJ_G0028533.1 mouse_genomes_project 4 31960571 32009348 - Pnrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0007999.1 MGP_C57BL6NJ_G0006538.1 mouse_genomes_project 4 32916917 32920864 + Gm12753 lincRNA lincRNA MGP_C57BL6NJ_T0014787.1 MGP_C57BL6NJ_G0012832.1 mouse_genomes_project 4 16085978 16088088 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068767.1 MGP_C57BL6NJ_G0029301.1 mouse_genomes_project 4 139779385 139787312 - MGP_C57BL6NJ_P0068767 Xkr8 protein_coding protein_coding MGP_C57BL6NJ_T0068768.1 MGP_C57BL6NJ_G0029301.1 mouse_genomes_project 4 139783115 139787294 - Xkr8 protein_coding processed_transcript MGP_C57BL6NJ_T0068769.1 MGP_C57BL6NJ_G0029301.1 mouse_genomes_project 4 139785669 139787249 - Xkr8 protein_coding processed_transcript MGP_C57BL6NJ_T0004776.1 MGP_C57BL6NJ_G0004137.1 mouse_genomes_project 4 165770591 165772774 - 1500002C15Rik antisense antisense MGP_C57BL6NJ_T0004777.1 MGP_C57BL6NJ_G0004137.1 mouse_genomes_project 4 165770594 165772674 - 1500002C15Rik antisense antisense MGP_C57BL6NJ_T0067016.1 MGP_C57BL6NJ_G0028924.1 mouse_genomes_project 4 107272621 107298440 + MGP_C57BL6NJ_P0067016 Tctex1d1 protein_coding protein_coding MGP_C57BL6NJ_T0067017.1 MGP_C57BL6NJ_G0028924.1 mouse_genomes_project 4 107278760 107298670 + MGP_C57BL6NJ_P0067017 Tctex1d1 protein_coding protein_coding MGP_C57BL6NJ_T0067018.1 MGP_C57BL6NJ_G0028924.1 mouse_genomes_project 4 107280954 107299690 + MGP_C57BL6NJ_P0067018 Tctex1d1 protein_coding protein_coding MGP_C57BL6NJ_T0067019.1 MGP_C57BL6NJ_G0028924.1 mouse_genomes_project 4 107284203 107285269 + Tctex1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0014891.1 MGP_C57BL6NJ_G0012936.1 mouse_genomes_project 4 48894129 48894465 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015080.1 MGP_C57BL6NJ_G0013125.1 mouse_genomes_project 4 117123324 117123459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010862.1 MGP_C57BL6NJ_G0008947.1 mouse_genomes_project 4 131146564 131146673 + Mir697 miRNA miRNA MGP_C57BL6NJ_T0015181.1 MGP_C57BL6NJ_G0013226.1 mouse_genomes_project 4 151727466 151731293 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103161.1 MGP_C57BL6NJ_G0040955.1 mouse_genomes_project 4 124309357 124310271 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069963.1 MGP_C57BL6NJ_G0029597.1 mouse_genomes_project 4 161690838 161699692 + MGP_C57BL6NJ_P0069963 Klhl21 protein_coding protein_coding MGP_C57BL6NJ_T0068192.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131455156 131476234 + MGP_C57BL6NJ_P0068192 Gnl2 protein_coding protein_coding MGP_C57BL6NJ_T0068193.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131468483 131498375 + MGP_C57BL6NJ_P0068193 Gnl2 protein_coding protein_coding MGP_C57BL6NJ_T0068194.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131468549 131481023 + Gnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068195.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131480736 131482699 + Gnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068196.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131483010 131486043 + Gnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068197.1 MGP_C57BL6NJ_G0029185.1 mouse_genomes_project 4 131496149 131498379 + Gnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0067427.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634319 116747182 + MGP_C57BL6NJ_P0067427 Spata6 protein_coding protein_coding MGP_C57BL6NJ_T0067428.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634344 116684023 + MGP_C57BL6NJ_P0067428 Spata6 protein_coding protein_coding MGP_C57BL6NJ_T0067429.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634345 116724823 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067430.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634373 116695644 + MGP_C57BL6NJ_P0067430 Spata6 protein_coding protein_coding MGP_C57BL6NJ_T0067431.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634394 116684083 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067432.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634398 116696364 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067433.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634438 116696949 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067434.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634464 116696414 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067435.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116634540 116747224 + MGP_C57BL6NJ_P0067435 Spata6 protein_coding protein_coding MGP_C57BL6NJ_T0067436.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116692119 116746234 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067437.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116694878 116747174 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067438.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116694917 116697624 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067439.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116723667 116740717 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0067440.1 MGP_C57BL6NJ_G0029001.1 mouse_genomes_project 4 116740177 116746242 + Spata6 protein_coding processed_transcript MGP_C57BL6NJ_T0069486.1 MGP_C57BL6NJ_G0029470.1 mouse_genomes_project 4 149487265 149502759 - MGP_C57BL6NJ_P0069486 Clcnkb protein_coding protein_coding MGP_C57BL6NJ_T0069487.1 MGP_C57BL6NJ_G0029470.1 mouse_genomes_project 4 149487265 149502759 - MGP_C57BL6NJ_P0069487 Clcnkb protein_coding protein_coding MGP_C57BL6NJ_T0069488.1 MGP_C57BL6NJ_G0029470.1 mouse_genomes_project 4 149487265 149488270 - MGP_C57BL6NJ_P0069488 Clcnkb protein_coding protein_coding MGP_C57BL6NJ_T0069489.1 MGP_C57BL6NJ_G0029470.1 mouse_genomes_project 4 149501040 149502706 - Clcnkb protein_coding processed_transcript MGP_C57BL6NJ_T0014943.1 MGP_C57BL6NJ_G0012988.1 mouse_genomes_project 4 67705971 67706309 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100354.1 MGP_C57BL6NJ_G0038400.1 mouse_genomes_project 4 63343891 63343998 + Gm23148 snRNA snRNA MGP_C57BL6NJ_T0004765.1 MGP_C57BL6NJ_G0004128.1 mouse_genomes_project 4 162153860 162154323 + Gm16333 antisense antisense MGP_C57BL6NJ_T0015025.1 MGP_C57BL6NJ_G0013070.1 mouse_genomes_project 4 101393372 101394277 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014763.1 MGP_C57BL6NJ_G0012808.1 mouse_genomes_project 4 9242389 9249905 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008016.1 MGP_C57BL6NJ_G0006554.1 mouse_genomes_project 4 49048914 49119619 + lincRNA lincRNA MGP_C57BL6NJ_T0014779.1 MGP_C57BL6NJ_G0012824.1 mouse_genomes_project 4 13824455 13825675 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069435.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066139 149078678 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069436.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066139 149071627 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069437.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066139 149114347 - MGP_C57BL6NJ_P0069437 Crocc protein_coding protein_coding MGP_C57BL6NJ_T0069438.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066139 149107115 - MGP_C57BL6NJ_P0069438 Crocc protein_coding protein_coding MGP_C57BL6NJ_T0069439.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066142 149107054 - MGP_C57BL6NJ_P0069439 Crocc protein_coding protein_coding MGP_C57BL6NJ_T0069440.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066142 149111996 - MGP_C57BL6NJ_P0069440 Crocc protein_coding protein_coding MGP_C57BL6NJ_T0069441.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149066481 149068303 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069442.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149069227 149072019 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069443.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149071040 149072049 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069444.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149099487 149111906 - Crocc protein_coding retained_intron MGP_C57BL6NJ_T0069445.1 MGP_C57BL6NJ_G0029460.1 mouse_genomes_project 4 149100728 149114342 - MGP_C57BL6NJ_P0069445 Crocc protein_coding protein_coding MGP_C57BL6NJ_T0101652.1 MGP_C57BL6NJ_G0039698.1 mouse_genomes_project 4 40595190 40595271 - Gm24837 snoRNA snoRNA MGP_C57BL6NJ_T0010861.1 MGP_C57BL6NJ_G0008946.1 mouse_genomes_project 4 129899862 129899964 + Mir6398 miRNA miRNA MGP_C57BL6NJ_T0004597.1 MGP_C57BL6NJ_G0003999.1 mouse_genomes_project 4 41064387 41065280 + Gm12405 antisense antisense MGP_C57BL6NJ_T0010857.1 MGP_C57BL6NJ_G0008942.1 mouse_genomes_project 4 126657230 126657319 - Mir30c-1 miRNA miRNA MGP_C57BL6NJ_T0066731.1 MGP_C57BL6NJ_G0028844.1 mouse_genomes_project 4 91848978 91849551 - MGP_C57BL6NJ_P0066731 Ifna9 protein_coding protein_coding MGP_C57BL6NJ_T0000001.1 MGP_C57BL6NJ_G0000001.1 mouse_genomes_project 4 123416917 123451210 - Gm17114 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C57BL6NJ_T0004575.1 MGP_C57BL6NJ_G0003982.1 mouse_genomes_project 4 6231748 6235151 - Gm11816 antisense antisense MGP_C57BL6NJ_T0004576.1 MGP_C57BL6NJ_G0003982.1 mouse_genomes_project 4 6233603 6235093 - Gm11816 antisense antisense MGP_C57BL6NJ_T0065005.1 MGP_C57BL6NJ_G0028436.1 mouse_genomes_project 4 253640 412833 + MGP_C57BL6NJ_P0065005 protein_coding protein_coding MGP_C57BL6NJ_T0065006.1 MGP_C57BL6NJ_G0028436.1 mouse_genomes_project 4 253652 412832 + MGP_C57BL6NJ_P0065006 protein_coding protein_coding MGP_C57BL6NJ_T0065007.1 MGP_C57BL6NJ_G0028436.1 mouse_genomes_project 4 253655 320704 + protein_coding processed_transcript MGP_C57BL6NJ_T0070237.1 MGP_C57BL6NJ_G0029644.1 mouse_genomes_project 4 165490532 165491834 + Tmem52 protein_coding retained_intron MGP_C57BL6NJ_T0070238.1 MGP_C57BL6NJ_G0029644.1 mouse_genomes_project 4 165490532 165492277 + MGP_C57BL6NJ_P0070238 Tmem52 protein_coding protein_coding MGP_C57BL6NJ_T0070239.1 MGP_C57BL6NJ_G0029644.1 mouse_genomes_project 4 165490532 165492277 + MGP_C57BL6NJ_P0070239 Tmem52 protein_coding protein_coding MGP_C57BL6NJ_T0070240.1 MGP_C57BL6NJ_G0029644.1 mouse_genomes_project 4 165490549 165492276 + MGP_C57BL6NJ_P0070240 Tmem52 protein_coding protein_coding MGP_C57BL6NJ_T0070241.1 MGP_C57BL6NJ_G0029644.1 mouse_genomes_project 4 165490565 165492208 + Tmem52 protein_coding retained_intron MGP_C57BL6NJ_T0014985.1 MGP_C57BL6NJ_G0013030.1 mouse_genomes_project 4 83113802 83114286 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067820.1 MGP_C57BL6NJ_G0029084.1 mouse_genomes_project 4 123509766 123513368 - MGP_C57BL6NJ_P0067820 Artn protein_coding protein_coding MGP_C57BL6NJ_T0067821.1 MGP_C57BL6NJ_G0029084.1 mouse_genomes_project 4 123509767 123513102 - MGP_C57BL6NJ_P0067821 Artn protein_coding protein_coding MGP_C57BL6NJ_T0067822.1 MGP_C57BL6NJ_G0029084.1 mouse_genomes_project 4 123511646 123513082 - Artn protein_coding processed_transcript MGP_C57BL6NJ_T0067823.1 MGP_C57BL6NJ_G0029084.1 mouse_genomes_project 4 123511748 123513018 - Artn protein_coding processed_transcript MGP_C57BL6NJ_T0018538.1 MGP_C57BL6NJ_G0015956.1 mouse_genomes_project 4 110729099 110779479 + Gm12724 processed_transcript processed_transcript MGP_C57BL6NJ_T0101719.1 MGP_C57BL6NJ_G0039765.1 mouse_genomes_project 4 151442536 151442668 + Gm22039 snoRNA snoRNA MGP_C57BL6NJ_T0015127.1 MGP_C57BL6NJ_G0013172.1 mouse_genomes_project 4 129520829 129521402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101665.1 MGP_C57BL6NJ_G0039711.1 mouse_genomes_project 4 57418853 57418985 - Gm26144 snoRNA snoRNA MGP_C57BL6NJ_T0068706.1 MGP_C57BL6NJ_G0029290.1 mouse_genomes_project 4 139260943 139283661 + MGP_C57BL6NJ_P0068706 Taf12 protein_coding protein_coding MGP_C57BL6NJ_T0068707.1 MGP_C57BL6NJ_G0029290.1 mouse_genomes_project 4 139260981 139263357 + Taf12 protein_coding processed_transcript MGP_C57BL6NJ_T0068708.1 MGP_C57BL6NJ_G0029290.1 mouse_genomes_project 4 139260984 139280752 + MGP_C57BL6NJ_P0068708 Taf12 protein_coding protein_coding MGP_C57BL6NJ_T0070078.1 MGP_C57BL6NJ_G0029616.1 mouse_genomes_project 4 163857846 163868463 - MGP_C57BL6NJ_P0070078 Dffb protein_coding protein_coding MGP_C57BL6NJ_T0070079.1 MGP_C57BL6NJ_G0029616.1 mouse_genomes_project 4 163862470 163868388 - Dffb protein_coding processed_transcript MGP_C57BL6NJ_T0070080.1 MGP_C57BL6NJ_G0029616.1 mouse_genomes_project 4 163865827 163868394 - Dffb protein_coding retained_intron MGP_C57BL6NJ_T0070081.1 MGP_C57BL6NJ_G0029616.1 mouse_genomes_project 4 163867839 163868418 - Dffb protein_coding retained_intron MGP_C57BL6NJ_T0102253.1 MGP_C57BL6NJ_G0040243.1 mouse_genomes_project 4 60799889 60800432 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0067786.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123449183 123454881 - MGP_C57BL6NJ_P0067786 Ccdc24 protein_coding protein_coding MGP_C57BL6NJ_T0067787.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123450307 123451625 - Ccdc24 protein_coding processed_transcript MGP_C57BL6NJ_T0067788.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123451400 123453947 - Ccdc24 protein_coding retained_intron MGP_C57BL6NJ_T0067790.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123451911 123455203 - MGP_C57BL6NJ_P0067790 Ccdc24 protein_coding protein_coding MGP_C57BL6NJ_T0067791.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123452160 123453753 - MGP_C57BL6NJ_P0067791 Ccdc24 protein_coding protein_coding MGP_C57BL6NJ_T0067792.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123452275 123455169 - MGP_C57BL6NJ_P0067792 Ccdc24 protein_coding protein_coding MGP_C57BL6NJ_T0067793.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123452416 123453981 - Ccdc24 protein_coding processed_transcript MGP_C57BL6NJ_T0067794.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123452794 123455206 - MGP_C57BL6NJ_P0067794 Ccdc24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067795.1 MGP_C57BL6NJ_G0029079.1 mouse_genomes_project 4 123453191 123455169 - MGP_C57BL6NJ_P0067795 Ccdc24 protein_coding protein_coding MGP_C57BL6NJ_T0001568.1 MGP_C57BL6NJ_G0001467.1 mouse_genomes_project 4 166069771 166073876 - TEC TEC MGP_C57BL6NJ_T0008132.1 MGP_C57BL6NJ_G0006642.1 mouse_genomes_project 4 134230175 134258828 + A630031M04Rik lincRNA lincRNA MGP_C57BL6NJ_T0015182.1 MGP_C57BL6NJ_G0013227.1 mouse_genomes_project 4 151938086 151938647 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014955.1 MGP_C57BL6NJ_G0013000.1 mouse_genomes_project 4 73423042 73424748 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014777.1 MGP_C57BL6NJ_G0012822.1 mouse_genomes_project 4 13541673 13541803 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007982.1 MGP_C57BL6NJ_G0006522.1 mouse_genomes_project 4 10254611 10281623 + Gm11820 lincRNA lincRNA MGP_C57BL6NJ_T0103164.1 MGP_C57BL6NJ_G0040958.1 mouse_genomes_project 4 127405196 127407837 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067045.1 MGP_C57BL6NJ_G0028928.1 mouse_genomes_project 4 107495276 107539576 - MGP_C57BL6NJ_P0067045 Slc35d1 protein_coding protein_coding MGP_C57BL6NJ_T0067046.1 MGP_C57BL6NJ_G0028928.1 mouse_genomes_project 4 107495283 107539215 - MGP_C57BL6NJ_P0067046 Slc35d1 protein_coding protein_coding MGP_C57BL6NJ_T0067047.1 MGP_C57BL6NJ_G0028928.1 mouse_genomes_project 4 107525832 107539215 - MGP_C57BL6NJ_P0067047 Slc35d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067048.1 MGP_C57BL6NJ_G0028928.1 mouse_genomes_project 4 107534743 107539211 - Slc35d1 protein_coding retained_intron MGP_C57BL6NJ_T0067049.1 MGP_C57BL6NJ_G0028928.1 mouse_genomes_project 4 107534964 107539084 - Slc35d1 protein_coding retained_intron MGP_C57BL6NJ_T0007977.1 MGP_C57BL6NJ_G0006517.1 mouse_genomes_project 4 8390262 8410711 + Gm26663 lincRNA lincRNA MGP_C57BL6NJ_T0010812.1 MGP_C57BL6NJ_G0008897.1 mouse_genomes_project 4 10470579 10470645 - Gm26250 miRNA miRNA MGP_C57BL6NJ_T0100359.1 MGP_C57BL6NJ_G0038405.1 mouse_genomes_project 4 86139870 86139977 - Gm23412 snRNA snRNA MGP_C57BL6NJ_T0067975.1 MGP_C57BL6NJ_G0029125.1 mouse_genomes_project 4 125314159 125323827 - MGP_C57BL6NJ_P0067975 AA415398 protein_coding protein_coding MGP_C57BL6NJ_T0067976.1 MGP_C57BL6NJ_G0029125.1 mouse_genomes_project 4 125315287 125320303 - AA415398 protein_coding processed_transcript MGP_C57BL6NJ_T0067977.1 MGP_C57BL6NJ_G0029125.1 mouse_genomes_project 4 125315514 125324188 - AA415398 protein_coding processed_transcript MGP_C57BL6NJ_T0067978.1 MGP_C57BL6NJ_G0029125.1 mouse_genomes_project 4 125318601 125324587 - AA415398 protein_coding processed_transcript MGP_C57BL6NJ_T0015112.1 MGP_C57BL6NJ_G0013157.1 mouse_genomes_project 4 125340287 125340690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069289.1 MGP_C57BL6NJ_G0029421.1 mouse_genomes_project 4 146187151 146194713 + MGP_C57BL6NJ_P0069289 Mul1 protein_coding protein_coding MGP_C57BL6NJ_T0069290.1 MGP_C57BL6NJ_G0029421.1 mouse_genomes_project 4 146187157 146194710 + MGP_C57BL6NJ_P0069290 Mul1 protein_coding protein_coding MGP_C57BL6NJ_T0069291.1 MGP_C57BL6NJ_G0029421.1 mouse_genomes_project 4 146187203 146191492 + MGP_C57BL6NJ_P0069291 Mul1 protein_coding protein_coding MGP_C57BL6NJ_T0010826.1 MGP_C57BL6NJ_G0008911.1 mouse_genomes_project 4 40189105 40189188 - Gm24112 miRNA miRNA MGP_C57BL6NJ_T0100412.1 MGP_C57BL6NJ_G0038458.1 mouse_genomes_project 4 157821367 157821475 + Gm23318 snRNA snRNA MGP_C57BL6NJ_T0069679.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157256621 157274705 + MGP_C57BL6NJ_P0069679 Mthfr protein_coding protein_coding MGP_C57BL6NJ_T0069680.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157256703 157263040 + MGP_C57BL6NJ_P0069680 Mthfr protein_coding protein_coding MGP_C57BL6NJ_T0069681.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157258354 157260993 + Mthfr protein_coding retained_intron MGP_C57BL6NJ_T0069682.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157258735 157278050 + MGP_C57BL6NJ_P0069682 Mthfr protein_coding protein_coding MGP_C57BL6NJ_T0069683.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157258831 157278050 + MGP_C57BL6NJ_P0069683 Mthfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069684.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157259146 157262426 + Mthfr protein_coding retained_intron MGP_C57BL6NJ_T0069685.1 MGP_C57BL6NJ_G0029545.1 mouse_genomes_project 4 157271163 157278047 + MGP_C57BL6NJ_P0069685 Mthfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010844.1 MGP_C57BL6NJ_G0008929.1 mouse_genomes_project 4 92206554 92206660 - Mir31 miRNA miRNA MGP_C57BL6NJ_T0004629.1 MGP_C57BL6NJ_G0004027.1 mouse_genomes_project 4 86243416 86256326 - Gm11413 antisense antisense MGP_C57BL6NJ_T0008195.1 MGP_C57BL6NJ_G0006688.1 mouse_genomes_project 4 157544331 157554041 + Gm13206 lincRNA lincRNA MGP_C57BL6NJ_T0008059.1 MGP_C57BL6NJ_G0006589.1 mouse_genomes_project 4 87681854 87682671 + Gm12415 lincRNA lincRNA MGP_C57BL6NJ_T0014903.1 MGP_C57BL6NJ_G0012948.1 mouse_genomes_project 4 52474555 52474855 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004722.1 MGP_C57BL6NJ_G0004094.1 mouse_genomes_project 4 145852418 145853342 - 1700095J12Rik antisense antisense MGP_C57BL6NJ_T0067399.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988630 115076137 - MGP_C57BL6NJ_P0067399 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067400.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115081323 - MGP_C57BL6NJ_P0067400 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067401.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115075499 - MGP_C57BL6NJ_P0067401 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067402.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115076137 - MGP_C57BL6NJ_P0067402 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067403.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115078875 - MGP_C57BL6NJ_P0067403 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067404.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115145269 - MGP_C57BL6NJ_P0067404 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067405.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114988645 115075499 - MGP_C57BL6NJ_P0067405 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067406.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114991267 115009073 - Elavl4 protein_coding processed_transcript MGP_C57BL6NJ_T0067407.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 114998111 115075226 - MGP_C57BL6NJ_P0067407 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067408.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 115011504 115062764 - Elavl4 protein_coding processed_transcript MGP_C57BL6NJ_T0067409.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 115012533 115076137 - MGP_C57BL6NJ_P0067409 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0067410.1 MGP_C57BL6NJ_G0028998.1 mouse_genomes_project 4 115039133 115079496 - MGP_C57BL6NJ_P0067410 Elavl4 protein_coding protein_coding MGP_C57BL6NJ_T0066481.1 MGP_C57BL6NJ_G0028796.1 mouse_genomes_project 4 65136407 65197912 - MGP_C57BL6NJ_P0066481 Tnc protein_coding protein_coding MGP_C57BL6NJ_T0066482.1 MGP_C57BL6NJ_G0028796.1 mouse_genomes_project 4 65136407 65224146 - MGP_C57BL6NJ_P0066482 Tnc protein_coding protein_coding MGP_C57BL6NJ_T0066483.1 MGP_C57BL6NJ_G0028796.1 mouse_genomes_project 4 65136407 65197912 - MGP_C57BL6NJ_P0066483 Tnc protein_coding protein_coding MGP_C57BL6NJ_T0066484.1 MGP_C57BL6NJ_G0028796.1 mouse_genomes_project 4 65189855 65197912 - MGP_C57BL6NJ_P0066484 Tnc protein_coding protein_coding MGP_C57BL6NJ_T0010870.1 MGP_C57BL6NJ_G0008955.1 mouse_genomes_project 4 139414765 139414861 + Gm25707 miRNA miRNA MGP_C57BL6NJ_T0014853.1 MGP_C57BL6NJ_G0012898.1 mouse_genomes_project 4 34270053 34270487 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004702.1 MGP_C57BL6NJ_G0004079.1 mouse_genomes_project 4 136959128 136982449 - Gm12963 antisense antisense MGP_C57BL6NJ_T0004703.1 MGP_C57BL6NJ_G0004079.1 mouse_genomes_project 4 136961654 136982449 - Gm12963 antisense antisense MGP_C57BL6NJ_T0004704.1 MGP_C57BL6NJ_G0004079.1 mouse_genomes_project 4 136961658 136963277 - Gm12963 antisense antisense MGP_C57BL6NJ_T0069381.1 MGP_C57BL6NJ_G0029445.1 mouse_genomes_project 4 147522434 147551285 + MGP_C57BL6NJ_P0069381 Aldh4a1 protein_coding protein_coding MGP_C57BL6NJ_T0069382.1 MGP_C57BL6NJ_G0029445.1 mouse_genomes_project 4 147522462 147551282 + Aldh4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0069383.1 MGP_C57BL6NJ_G0029445.1 mouse_genomes_project 4 147522677 147537159 + Aldh4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068423.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135971402 136014357 - MGP_C57BL6NJ_P0068423 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068424.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135971402 136014320 - MGP_C57BL6NJ_P0068424 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068425.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135971402 136014505 - MGP_C57BL6NJ_P0068425 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068426.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135972768 136007390 - MGP_C57BL6NJ_P0068426 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068427.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135973943 136014355 - S100pbp protein_coding processed_transcript MGP_C57BL6NJ_T0068428.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135974222 136014355 - S100pbp protein_coding retained_intron MGP_C57BL6NJ_T0068429.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135974222 136005282 - S100pbp protein_coding retained_intron MGP_C57BL6NJ_T0068430.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135974428 136014290 - MGP_C57BL6NJ_P0068430 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068431.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135974428 136014387 - MGP_C57BL6NJ_P0068431 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068432.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135986431 136014395 - S100pbp protein_coding processed_transcript MGP_C57BL6NJ_T0068433.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 135991657 136001551 - S100pbp protein_coding processed_transcript MGP_C57BL6NJ_T0068434.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 136000410 136014404 - MGP_C57BL6NJ_P0068434 S100pbp protein_coding protein_coding MGP_C57BL6NJ_T0068435.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 136006601 136014448 - S100pbp protein_coding processed_transcript MGP_C57BL6NJ_T0068436.1 MGP_C57BL6NJ_G0029239.1 mouse_genomes_project 4 136006659 136014276 - S100pbp protein_coding processed_transcript MGP_C57BL6NJ_T0011819.1 MGP_C57BL6NJ_G0009904.1 mouse_genomes_project 4 17197442 17197732 - Gm25655 misc_RNA misc_RNA MGP_C57BL6NJ_T0068297.1 MGP_C57BL6NJ_G0029208.1 mouse_genomes_project 4 133199150 133203577 + MGP_C57BL6NJ_P0068297 5730409E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0068298.1 MGP_C57BL6NJ_G0029208.1 mouse_genomes_project 4 133199186 133203577 + MGP_C57BL6NJ_P0068298 5730409E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0067537.1 MGP_C57BL6NJ_G0029032.1 mouse_genomes_project 4 121195796 121203890 + MGP_C57BL6NJ_P0067537 Mob3c protein_coding protein_coding MGP_C57BL6NJ_T0067538.1 MGP_C57BL6NJ_G0029032.1 mouse_genomes_project 4 121195801 121199416 + Mob3c protein_coding retained_intron MGP_C57BL6NJ_T0067539.1 MGP_C57BL6NJ_G0029032.1 mouse_genomes_project 4 121196362 121199246 + MGP_C57BL6NJ_P0067539 Mob3c protein_coding protein_coding MGP_C57BL6NJ_T0004661.1 MGP_C57BL6NJ_G0004046.1 mouse_genomes_project 4 112421242 112424191 - Lrp8os1 antisense antisense MGP_C57BL6NJ_T0004662.1 MGP_C57BL6NJ_G0004046.1 mouse_genomes_project 4 112421263 112424191 - Lrp8os1 antisense antisense MGP_C57BL6NJ_T0067921.1 MGP_C57BL6NJ_G0029116.1 mouse_genomes_project 4 124959169 124972280 - MGP_C57BL6NJ_P0067921 4930538K18Rik protein_coding protein_coding MGP_C57BL6NJ_T0101671.1 MGP_C57BL6NJ_G0039717.1 mouse_genomes_project 4 64073310 64073444 + Gm25391 snoRNA snoRNA MGP_C57BL6NJ_T0066454.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561790 64649109 - MGP_C57BL6NJ_P0066454 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066455.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64647467 - Whrn protein_coding processed_transcript MGP_C57BL6NJ_T0066456.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64580208 - Whrn protein_coding retained_intron MGP_C57BL6NJ_T0066457.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64580208 - Whrn protein_coding retained_intron MGP_C57BL6NJ_T0066458.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64649827 - MGP_C57BL6NJ_P0066458 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066459.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64649827 - MGP_C57BL6NJ_P0066459 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066460.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64649827 - MGP_C57BL6NJ_P0066460 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066461.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64561795 64649827 - MGP_C57BL6NJ_P0066461 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066462.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64566354 64578815 - MGP_C57BL6NJ_P0066462 Whrn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066463.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64572597 64578888 - Whrn protein_coding processed_transcript MGP_C57BL6NJ_T0066464.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64578318 64649867 - MGP_C57BL6NJ_P0066464 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066465.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64581686 64613501 - Whrn protein_coding retained_intron MGP_C57BL6NJ_T0066466.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64583114 64624860 - MGP_C57BL6NJ_P0066466 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066467.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64612361 64648635 - MGP_C57BL6NJ_P0066467 Whrn protein_coding protein_coding MGP_C57BL6NJ_T0066468.1 MGP_C57BL6NJ_G0028789.1 mouse_genomes_project 4 64613018 64648553 - Whrn protein_coding retained_intron MGP_C57BL6NJ_T0069596.1 MGP_C57BL6NJ_G0029507.1 mouse_genomes_project 4 152190042 152192369 - MGP_C57BL6NJ_P0069596 protein_coding protein_coding MGP_C57BL6NJ_T0011830.1 MGP_C57BL6NJ_G0009915.1 mouse_genomes_project 4 55313950 55314239 + Gm24628 misc_RNA misc_RNA MGP_C57BL6NJ_T0066946.1 MGP_C57BL6NJ_G0028908.1 mouse_genomes_project 4 104882738 105150110 + MGP_C57BL6NJ_P0066946 Cachd1 protein_coding protein_coding MGP_C57BL6NJ_T0066947.1 MGP_C57BL6NJ_G0028908.1 mouse_genomes_project 4 104882738 105124778 + MGP_C57BL6NJ_P0066947 Cachd1 protein_coding protein_coding MGP_C57BL6NJ_T0066948.1 MGP_C57BL6NJ_G0028908.1 mouse_genomes_project 4 105114851 105123300 + Cachd1 protein_coding processed_transcript MGP_C57BL6NJ_T0066949.1 MGP_C57BL6NJ_G0028908.1 mouse_genomes_project 4 105114950 105123470 + Cachd1 protein_coding processed_transcript MGP_C57BL6NJ_T0014966.1 MGP_C57BL6NJ_G0013011.1 mouse_genomes_project 4 77279314 77279515 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100416.1 MGP_C57BL6NJ_G0038462.1 mouse_genomes_project 4 165758073 165758175 - Gm22573 snRNA snRNA MGP_C57BL6NJ_T0010889.1 MGP_C57BL6NJ_G0008974.1 mouse_genomes_project 4 147896115 147896210 - Mir2139 miRNA miRNA MGP_C57BL6NJ_T0015202.1 MGP_C57BL6NJ_G0013247.1 mouse_genomes_project 4 154144252 154144999 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068900.1 MGP_C57BL6NJ_G0029333.1 mouse_genomes_project 4 141292462 141297621 + MGP_C57BL6NJ_P0068900 Zfp683 protein_coding protein_coding MGP_C57BL6NJ_T0101712.1 MGP_C57BL6NJ_G0039758.1 mouse_genomes_project 4 139304806 139304935 + Snora44 snoRNA snoRNA MGP_C57BL6NJ_T0103158.1 MGP_C57BL6NJ_G0040952.1 mouse_genomes_project 4 120848996 120860502 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008158.1 MGP_C57BL6NJ_G0006661.1 mouse_genomes_project 4 139255488 139255646 + Gm28872 lincRNA lincRNA MGP_C57BL6NJ_T0004615.1 MGP_C57BL6NJ_G0004013.1 mouse_genomes_project 4 47241909 47252804 - Gm12426 antisense antisense MGP_C57BL6NJ_T0068976.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141683271 141716629 + MGP_C57BL6NJ_P0068976 Pafah2 protein_coding protein_coding MGP_C57BL6NJ_T0068977.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141683321 141708109 + Pafah2 protein_coding processed_transcript MGP_C57BL6NJ_T0068978.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141683358 141701885 + Pafah2 protein_coding processed_transcript MGP_C57BL6NJ_T0068979.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141684131 141700484 + Pafah2 protein_coding processed_transcript MGP_C57BL6NJ_T0068980.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141684279 141717550 + MGP_C57BL6NJ_P0068980 Pafah2 protein_coding protein_coding MGP_C57BL6NJ_T0068981.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141690504 141692668 + MGP_C57BL6NJ_P0068981 Pafah2 protein_coding protein_coding MGP_C57BL6NJ_T0068982.1 MGP_C57BL6NJ_G0029350.1 mouse_genomes_project 4 141690562 141712569 + Pafah2 protein_coding processed_transcript MGP_C57BL6NJ_T0015106.1 MGP_C57BL6NJ_G0013151.1 mouse_genomes_project 4 124714926 124715932 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010818.1 MGP_C57BL6NJ_G0008903.1 mouse_genomes_project 4 23992579 23992689 - Gm26067 miRNA miRNA MGP_C57BL6NJ_T0008071.1 MGP_C57BL6NJ_G0006599.1 mouse_genomes_project 4 98798887 98801224 - 4930551L18Rik lincRNA lincRNA MGP_C57BL6NJ_T0015128.1 MGP_C57BL6NJ_G0013173.1 mouse_genomes_project 4 129705266 129705584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014746.1 MGP_C57BL6NJ_G0012791.1 mouse_genomes_project 4 5552048 5552998 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014786.1 MGP_C57BL6NJ_G0012831.1 mouse_genomes_project 4 16085458 16085904 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015051.1 MGP_C57BL6NJ_G0013096.1 mouse_genomes_project 4 109825264 109825757 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069647.1 MGP_C57BL6NJ_G0029536.1 mouse_genomes_project 4 157029351 157050215 - MGP_C57BL6NJ_P0069647 Zfp933 protein_coding protein_coding MGP_C57BL6NJ_T0069648.1 MGP_C57BL6NJ_G0029536.1 mouse_genomes_project 4 157033112 157050215 - MGP_C57BL6NJ_P0069648 Zfp933 protein_coding protein_coding MGP_C57BL6NJ_T0101661.1 MGP_C57BL6NJ_G0039707.1 mouse_genomes_project 4 54491221 54491346 + Gm23745 snoRNA snoRNA MGP_C57BL6NJ_T0015067.1 MGP_C57BL6NJ_G0013112.1 mouse_genomes_project 4 113404932 113405488 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103133.1 MGP_C57BL6NJ_G0040927.1 mouse_genomes_project 4 43503496 43504444 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0070025.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162032569 162044159 - MGP_C57BL6NJ_P0070025 Rnf207 protein_coding protein_coding MGP_C57BL6NJ_T0070026.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162032861 162034584 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070027.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162036934 162044009 - MGP_C57BL6NJ_P0070027 Rnf207 protein_coding protein_coding MGP_C57BL6NJ_T0070028.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162037107 162038954 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070029.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162037266 162038899 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070030.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162038384 162038951 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070031.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162038943 162044032 - MGP_C57BL6NJ_P0070031 Rnf207 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070032.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162038953 162041516 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070033.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162040103 162044544 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070034.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162040105 162044170 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070035.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162040436 162044176 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0070036.1 MGP_C57BL6NJ_G0029609.1 mouse_genomes_project 4 162041011 162041879 - Rnf207 protein_coding retained_intron MGP_C57BL6NJ_T0066215.1 MGP_C57BL6NJ_G0028722.1 mouse_genomes_project 4 54274700 54327046 + MGP_C57BL6NJ_P0066215 Fktn protein_coding protein_coding MGP_C57BL6NJ_T0066216.1 MGP_C57BL6NJ_G0028722.1 mouse_genomes_project 4 54274865 54324074 + MGP_C57BL6NJ_P0066216 Fktn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066217.1 MGP_C57BL6NJ_G0028722.1 mouse_genomes_project 4 54280707 54324532 + MGP_C57BL6NJ_P0066217 Fktn protein_coding protein_coding MGP_C57BL6NJ_T0014824.1 MGP_C57BL6NJ_G0012869.1 mouse_genomes_project 4 26840571 26840918 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069292.1 MGP_C57BL6NJ_G0029422.1 mouse_genomes_project 4 146206761 146212487 + MGP_C57BL6NJ_P0069292 Camk2n1 protein_coding protein_coding MGP_C57BL6NJ_T0103155.1 MGP_C57BL6NJ_G0040949.1 mouse_genomes_project 4 117696415 117697482 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067171.1 MGP_C57BL6NJ_G0028957.1 mouse_genomes_project 4 111788774 111811969 - MGP_C57BL6NJ_P0067171 Lrrc42 protein_coding protein_coding MGP_C57BL6NJ_T0067172.1 MGP_C57BL6NJ_G0028957.1 mouse_genomes_project 4 111788777 111801928 - Lrrc42 protein_coding retained_intron MGP_C57BL6NJ_T0067173.1 MGP_C57BL6NJ_G0028957.1 mouse_genomes_project 4 111789019 111791241 - Lrrc42 protein_coding retained_intron MGP_C57BL6NJ_T0067174.1 MGP_C57BL6NJ_G0028957.1 mouse_genomes_project 4 111789199 111796871 - MGP_C57BL6NJ_P0067174 Lrrc42 protein_coding protein_coding MGP_C57BL6NJ_T0067175.1 MGP_C57BL6NJ_G0028957.1 mouse_genomes_project 4 111805818 111811566 - MGP_C57BL6NJ_P0067175 Lrrc42 protein_coding protein_coding MGP_C57BL6NJ_T0008208.1 MGP_C57BL6NJ_G0006701.1 mouse_genomes_project 4 164599966 164600585 - Gm27202 lincRNA lincRNA MGP_C57BL6NJ_T0070303.1 MGP_C57BL6NJ_G0029658.1 mouse_genomes_project 4 165833545 165836280 + MGP_C57BL6NJ_P0070303 Ankrd65 protein_coding protein_coding MGP_C57BL6NJ_T0070304.1 MGP_C57BL6NJ_G0029658.1 mouse_genomes_project 4 165834278 165842557 + MGP_C57BL6NJ_P0070304 Ankrd65 protein_coding protein_coding MGP_C57BL6NJ_T0008050.1 MGP_C57BL6NJ_G0006582.1 mouse_genomes_project 4 84733544 84735441 - Gm12914 lincRNA lincRNA MGP_C57BL6NJ_T0066692.1 MGP_C57BL6NJ_G0028835.1 mouse_genomes_project 4 89968044 89974264 - MGP_C57BL6NJ_P0066692 Rps6 protein_coding protein_coding MGP_C57BL6NJ_T0066693.1 MGP_C57BL6NJ_G0028835.1 mouse_genomes_project 4 89971637 89974197 - Rps6 protein_coding processed_transcript MGP_C57BL6NJ_T0066694.1 MGP_C57BL6NJ_G0028835.1 mouse_genomes_project 4 89972532 89974206 - Rps6 protein_coding processed_transcript MGP_C57BL6NJ_T0066695.1 MGP_C57BL6NJ_G0028835.1 mouse_genomes_project 4 89972642 89974184 - Rps6 protein_coding processed_transcript MGP_C57BL6NJ_T0066140.1 MGP_C57BL6NJ_G0028698.1 mouse_genomes_project 4 49220176 49370880 + Plppr1 protein_coding retained_intron MGP_C57BL6NJ_T0066141.1 MGP_C57BL6NJ_G0028698.1 mouse_genomes_project 4 49220185 49514183 + MGP_C57BL6NJ_P0066141 Plppr1 protein_coding protein_coding MGP_C57BL6NJ_T0066142.1 MGP_C57BL6NJ_G0028698.1 mouse_genomes_project 4 49220359 49476010 + Plppr1 protein_coding retained_intron MGP_C57BL6NJ_T0103167.1 MGP_C57BL6NJ_G0040961.1 mouse_genomes_project 4 128830269 128838424 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0065888.1 MGP_C57BL6NJ_G0028646.1 mouse_genomes_project 4 43608888 43682724 + Reck protein_coding processed_transcript MGP_C57BL6NJ_T0065889.1 MGP_C57BL6NJ_G0028646.1 mouse_genomes_project 4 43608888 43682785 + MGP_C57BL6NJ_P0065889 Reck protein_coding protein_coding MGP_C57BL6NJ_T0065890.1 MGP_C57BL6NJ_G0028646.1 mouse_genomes_project 4 43678384 43680361 + Reck protein_coding processed_transcript MGP_C57BL6NJ_T0065307.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22496312 22595718 + Mms22l protein_coding retained_intron MGP_C57BL6NJ_T0065308.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22496312 22617333 + MGP_C57BL6NJ_P0065308 Mms22l protein_coding protein_coding MGP_C57BL6NJ_T0065309.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22496323 22513126 + MGP_C57BL6NJ_P0065309 Mms22l protein_coding protein_coding MGP_C57BL6NJ_T0065310.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22496326 22496906 + Mms22l protein_coding processed_transcript MGP_C57BL6NJ_T0065311.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22496405 22617329 + MGP_C57BL6NJ_P0065311 Mms22l protein_coding protein_coding MGP_C57BL6NJ_T0065312.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22497756 22540932 + MGP_C57BL6NJ_P0065312 Mms22l protein_coding protein_coding MGP_C57BL6NJ_T0065313.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22514874 22617332 + Mms22l protein_coding retained_intron MGP_C57BL6NJ_T0065314.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22517146 22614367 + MGP_C57BL6NJ_P0065314 Mms22l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065315.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22548116 22589175 + MGP_C57BL6NJ_P0065315 Mms22l protein_coding protein_coding MGP_C57BL6NJ_T0065316.1 MGP_C57BL6NJ_G0028510.1 mouse_genomes_project 4 22593227 22605588 + Mms22l protein_coding processed_transcript MGP_C57BL6NJ_T0015119.1 MGP_C57BL6NJ_G0013164.1 mouse_genomes_project 4 127306596 127306924 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070225.1 MGP_C57BL6NJ_G0029642.1 mouse_genomes_project 4 165394598 165408789 - Gabrd protein_coding processed_transcript MGP_C57BL6NJ_T0070226.1 MGP_C57BL6NJ_G0029642.1 mouse_genomes_project 4 165394598 165408854 - MGP_C57BL6NJ_P0070226 Gabrd protein_coding protein_coding MGP_C57BL6NJ_T0070227.1 MGP_C57BL6NJ_G0029642.1 mouse_genomes_project 4 165398183 165408778 - Gabrd protein_coding processed_transcript MGP_C57BL6NJ_T0001563.1 MGP_C57BL6NJ_G0001462.1 mouse_genomes_project 4 151016740 151016959 + TEC TEC MGP_C57BL6NJ_T0100410.1 MGP_C57BL6NJ_G0038456.1 mouse_genomes_project 4 157700756 157700908 - Gm23303 snRNA snRNA MGP_C57BL6NJ_T0069604.1 MGP_C57BL6NJ_G0029511.1 mouse_genomes_project 4 152497988 152502993 - MGP_C57BL6NJ_P0069604 Gm10436 protein_coding protein_coding MGP_C57BL6NJ_T0099226.1 MGP_C57BL6NJ_G0037290.1 mouse_genomes_project 4 52191197 52191630 + Gm24943 ribozyme ribozyme MGP_C57BL6NJ_T0015081.1 MGP_C57BL6NJ_G0013126.1 mouse_genomes_project 4 117527679 117528279 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000195.1 MGP_C57BL6NJ_G0000145.1 mouse_genomes_project 4 51572697 51573346 + MGP_C57BL6NJ_P0000195 Igkv6-20 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000196.1 MGP_C57BL6NJ_G0000145.1 mouse_genomes_project 4 51572725 51573346 + MGP_C57BL6NJ_P0000196 Igkv6-20 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010898.1 MGP_C57BL6NJ_G0008983.1 mouse_genomes_project 4 159540555 159540657 + Mir34a miRNA miRNA MGP_C57BL6NJ_T0014754.1 MGP_C57BL6NJ_G0012799.1 mouse_genomes_project 4 7896598 7900988 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015172.1 MGP_C57BL6NJ_G0013217.1 mouse_genomes_project 4 144979928 144980306 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068268.1 MGP_C57BL6NJ_G0029202.1 mouse_genomes_project 4 132881946 132887391 - Adprhl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068269.1 MGP_C57BL6NJ_G0029202.1 mouse_genomes_project 4 132881946 132887725 - MGP_C57BL6NJ_P0068269 Adprhl2 protein_coding protein_coding MGP_C57BL6NJ_T0068270.1 MGP_C57BL6NJ_G0029202.1 mouse_genomes_project 4 132881951 132887489 - Adprhl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068271.1 MGP_C57BL6NJ_G0029202.1 mouse_genomes_project 4 132884050 132887383 - Adprhl2 protein_coding processed_transcript MGP_C57BL6NJ_T0066045.1 MGP_C57BL6NJ_G0028673.1 mouse_genomes_project 4 46066931 46102558 + MGP_C57BL6NJ_P0066045 Ncbp1 protein_coding protein_coding MGP_C57BL6NJ_T0066047.1 MGP_C57BL6NJ_G0028673.1 mouse_genomes_project 4 46088055 46090254 + Ncbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0066048.1 MGP_C57BL6NJ_G0028673.1 mouse_genomes_project 4 46095350 46102134 + Ncbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069064.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142815343 142859124 - MGP_C57BL6NJ_P0069064 Nipal3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069065.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142816060 142859124 - MGP_C57BL6NJ_P0069065 Nipal3 protein_coding protein_coding MGP_C57BL6NJ_T0069066.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142818795 142859241 - MGP_C57BL6NJ_P0069066 Nipal3 protein_coding protein_coding MGP_C57BL6NJ_T0069067.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142821789 142839042 - MGP_C57BL6NJ_P0069067 Nipal3 protein_coding protein_coding MGP_C57BL6NJ_T0069068.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142822080 142824967 - Nipal3 protein_coding processed_transcript MGP_C57BL6NJ_T0069069.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142822170 142825239 - Nipal3 protein_coding processed_transcript MGP_C57BL6NJ_T0069070.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142844324 142859587 - MGP_C57BL6NJ_P0069070 Nipal3 protein_coding protein_coding MGP_C57BL6NJ_T0069071.1 MGP_C57BL6NJ_G0029368.1 mouse_genomes_project 4 142847241 142859656 - MGP_C57BL6NJ_P0069071 Nipal3 protein_coding protein_coding MGP_C57BL6NJ_T0067824.1 MGP_C57BL6NJ_G0029085.1 mouse_genomes_project 4 123515758 123736824 - MGP_C57BL6NJ_P0067824 St3gal3 protein_coding protein_coding MGP_C57BL6NJ_T0067825.1 MGP_C57BL6NJ_G0029085.1 mouse_genomes_project 4 123515762 123736848 - MGP_C57BL6NJ_P0067825 St3gal3 protein_coding protein_coding MGP_C57BL6NJ_T0067826.1 MGP_C57BL6NJ_G0029085.1 mouse_genomes_project 4 123515764 123736816 - MGP_C57BL6NJ_P0067826 St3gal3 protein_coding protein_coding MGP_C57BL6NJ_T0067827.1 MGP_C57BL6NJ_G0029085.1 mouse_genomes_project 4 123526111 123618369 - MGP_C57BL6NJ_P0067827 St3gal3 protein_coding protein_coding MGP_C57BL6NJ_T0067828.1 MGP_C57BL6NJ_G0029085.1 mouse_genomes_project 4 123526203 123553950 - MGP_C57BL6NJ_P0067828 St3gal3 protein_coding protein_coding MGP_C57BL6NJ_T0065331.1 MGP_C57BL6NJ_G0028515.1 mouse_genomes_project 4 23330526 23364814 - Ufl1 protein_coding retained_intron MGP_C57BL6NJ_T0065332.1 MGP_C57BL6NJ_G0028515.1 mouse_genomes_project 4 23332396 23364806 - MGP_C57BL6NJ_P0065332 Ufl1 protein_coding protein_coding MGP_C57BL6NJ_T0065333.1 MGP_C57BL6NJ_G0028515.1 mouse_genomes_project 4 23351659 23364802 - Ufl1 protein_coding processed_transcript MGP_C57BL6NJ_T0066065.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46467121 46512759 - MGP_C57BL6NJ_P0066065 Trim14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066066.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46468159 46511051 - Trim14 protein_coding processed_transcript MGP_C57BL6NJ_T0066067.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46481532 46512778 - MGP_C57BL6NJ_P0066067 Trim14 protein_coding protein_coding MGP_C57BL6NJ_T0066068.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46485814 46511079 - Trim14 protein_coding processed_transcript MGP_C57BL6NJ_T0066069.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46487902 46512751 - MGP_C57BL6NJ_P0066069 Trim14 protein_coding protein_coding MGP_C57BL6NJ_T0066070.1 MGP_C57BL6NJ_G0028680.1 mouse_genomes_project 4 46495366 46511241 - Trim14 protein_coding processed_transcript MGP_C57BL6NJ_T0065587.1 MGP_C57BL6NJ_G0028577.1 mouse_genomes_project 4 41060346 41062527 - MGP_C57BL6NJ_P0065587 Enho protein_coding protein_coding MGP_C57BL6NJ_T0100337.1 MGP_C57BL6NJ_G0038383.1 mouse_genomes_project 4 30613701 30613819 - Gm26254 snRNA snRNA MGP_C57BL6NJ_T0014945.1 MGP_C57BL6NJ_G0012990.1 mouse_genomes_project 4 68553055 68553424 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100378.1 MGP_C57BL6NJ_G0038424.1 mouse_genomes_project 4 113704336 113704441 - Gm23589 snRNA snRNA MGP_C57BL6NJ_T0069586.1 MGP_C57BL6NJ_G0029498.1 mouse_genomes_project 4 151957671 151965111 - MGP_C57BL6NJ_P0069586 Gm13089 protein_coding protein_coding MGP_C57BL6NJ_T0014771.1 MGP_C57BL6NJ_G0012816.1 mouse_genomes_project 4 12872206 12872631 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067330.1 MGP_C57BL6NJ_G0028987.1 mouse_genomes_project 4 113566679 113637845 + MGP_C57BL6NJ_P0067330 Rab3b protein_coding protein_coding MGP_C57BL6NJ_T0067331.1 MGP_C57BL6NJ_G0028987.1 mouse_genomes_project 4 113566816 113635711 + MGP_C57BL6NJ_P0067331 Rab3b protein_coding protein_coding MGP_C57BL6NJ_T0067332.1 MGP_C57BL6NJ_G0028987.1 mouse_genomes_project 4 113581771 113635714 + MGP_C57BL6NJ_P0067332 Rab3b protein_coding protein_coding MGP_C57BL6NJ_T0067333.1 MGP_C57BL6NJ_G0028987.1 mouse_genomes_project 4 113633625 113635431 + Rab3b protein_coding processed_transcript MGP_C57BL6NJ_T0066485.1 MGP_C57BL6NJ_G0028797.1 mouse_genomes_project 4 66385943 66634489 + MGP_C57BL6NJ_P0066485 Pappa protein_coding protein_coding MGP_C57BL6NJ_T0066114.1 MGP_C57BL6NJ_G0028692.1 mouse_genomes_project 4 48294700 48387772 - MGP_C57BL6NJ_P0066114 Erp44 protein_coding protein_coding MGP_C57BL6NJ_T0066115.1 MGP_C57BL6NJ_G0028692.1 mouse_genomes_project 4 48295867 48298402 - Erp44 protein_coding processed_transcript MGP_C57BL6NJ_T0066116.1 MGP_C57BL6NJ_G0028692.1 mouse_genomes_project 4 48342531 48349884 - Erp44 protein_coding processed_transcript MGP_C57BL6NJ_T0066117.1 MGP_C57BL6NJ_G0028692.1 mouse_genomes_project 4 48345174 48387666 - Erp44 protein_coding processed_transcript MGP_C57BL6NJ_T0008198.1 MGP_C57BL6NJ_G0006691.1 mouse_genomes_project 4 159212929 159221077 + Gm16188 lincRNA lincRNA MGP_C57BL6NJ_T0068736.1 MGP_C57BL6NJ_G0029295.1 mouse_genomes_project 4 139478827 139484018 - MGP_C57BL6NJ_P0068736 Med18 protein_coding protein_coding MGP_C57BL6NJ_T0068737.1 MGP_C57BL6NJ_G0029295.1 mouse_genomes_project 4 139480051 139483428 - MGP_C57BL6NJ_P0068737 Med18 protein_coding protein_coding MGP_C57BL6NJ_T0014940.1 MGP_C57BL6NJ_G0012985.1 mouse_genomes_project 4 64733229 64733476 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068988.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793183 141806006 + MGP_C57BL6NJ_P0068988 Paqr7 protein_coding protein_coding MGP_C57BL6NJ_T0068989.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793461 141804408 + MGP_C57BL6NJ_P0068989 Paqr7 protein_coding protein_coding MGP_C57BL6NJ_T0068990.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793461 141804739 + MGP_C57BL6NJ_P0068990 Paqr7 protein_coding protein_coding MGP_C57BL6NJ_T0068991.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793467 141804468 + MGP_C57BL6NJ_P0068991 Paqr7 protein_coding protein_coding MGP_C57BL6NJ_T0068992.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793490 141808710 + MGP_C57BL6NJ_P0068992 Paqr7 protein_coding protein_coding MGP_C57BL6NJ_T0068993.1 MGP_C57BL6NJ_G0029352.1 mouse_genomes_project 4 141793527 141804188 + Paqr7 protein_coding processed_transcript MGP_C57BL6NJ_T0068413.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929258 135941806 - MGP_C57BL6NJ_P0068413 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068414.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929259 135938737 - MGP_C57BL6NJ_P0068414 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068415.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929265 135941510 - MGP_C57BL6NJ_P0068415 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068416.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929265 135941061 - MGP_C57BL6NJ_P0068416 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068417.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929949 135940716 - MGP_C57BL6NJ_P0068417 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068418.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135929963 135941659 - MGP_C57BL6NJ_P0068418 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068419.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135930138 135941695 - MGP_C57BL6NJ_P0068419 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068420.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135932453 135941509 - MGP_C57BL6NJ_P0068420 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0068421.1 MGP_C57BL6NJ_G0029237.1 mouse_genomes_project 4 135938374 135941478 - MGP_C57BL6NJ_P0068421 Hpca protein_coding protein_coding MGP_C57BL6NJ_T0066885.1 MGP_C57BL6NJ_G0028893.1 mouse_genomes_project 4 102677961 102684682 + MGP_C57BL6NJ_P0066885 L1td1 protein_coding protein_coding MGP_C57BL6NJ_T0066886.1 MGP_C57BL6NJ_G0028893.1 mouse_genomes_project 4 102677975 102690745 + MGP_C57BL6NJ_P0066886 L1td1 protein_coding protein_coding MGP_C57BL6NJ_T0066887.1 MGP_C57BL6NJ_G0028893.1 mouse_genomes_project 4 102678020 102684598 + MGP_C57BL6NJ_P0066887 L1td1 protein_coding protein_coding MGP_C57BL6NJ_T0066888.1 MGP_C57BL6NJ_G0028893.1 mouse_genomes_project 4 102684240 102690381 + MGP_C57BL6NJ_P0066888 L1td1 protein_coding protein_coding MGP_C57BL6NJ_T0001567.1 MGP_C57BL6NJ_G0001466.1 mouse_genomes_project 4 161688794 161691655 - TEC TEC MGP_C57BL6NJ_T0018574.1 MGP_C57BL6NJ_G0015974.1 mouse_genomes_project 4 162085500 162088948 - processed_transcript processed_transcript MGP_C57BL6NJ_T0067419.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116315119 116362534 + MGP_C57BL6NJ_P0067419 Bend5 protein_coding protein_coding MGP_C57BL6NJ_T0067420.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116315160 116334758 + Bend5 protein_coding processed_transcript MGP_C57BL6NJ_T0067421.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116315201 116362156 + Bend5 protein_coding processed_transcript MGP_C57BL6NJ_T0067422.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116315320 116320652 + Bend5 protein_coding processed_transcript MGP_C57BL6NJ_T0067423.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116334708 116362532 + MGP_C57BL6NJ_P0067423 Bend5 protein_coding protein_coding MGP_C57BL6NJ_T0067424.1 MGP_C57BL6NJ_G0029000.1 mouse_genomes_project 4 116334830 116362163 + Bend5 protein_coding processed_transcript MGP_C57BL6NJ_T0008009.1 MGP_C57BL6NJ_G0006548.1 mouse_genomes_project 4 44784503 44791766 + Gm12678 lincRNA lincRNA MGP_C57BL6NJ_T0065798.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175292 43176385 - MGP_C57BL6NJ_P0065798 Arhgef39 protein_coding protein_coding MGP_C57BL6NJ_T0065799.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175292 43178846 - MGP_C57BL6NJ_P0065799 Arhgef39 protein_coding protein_coding MGP_C57BL6NJ_T0065800.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175296 43178770 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065801.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175298 43176364 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065802.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175674 43178812 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065803.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43175971 43178759 - MGP_C57BL6NJ_P0065803 Arhgef39 protein_coding protein_coding MGP_C57BL6NJ_T0065804.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43176370 43178266 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065805.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43176411 43178226 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065806.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43176882 43178762 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0065807.1 MGP_C57BL6NJ_G0028626.1 mouse_genomes_project 4 43178297 43178812 - Arhgef39 protein_coding processed_transcript MGP_C57BL6NJ_T0015058.1 MGP_C57BL6NJ_G0013103.1 mouse_genomes_project 4 111290872 111293812 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007964.1 MGP_C57BL6NJ_G0006509.1 mouse_genomes_project 4 218949 227454 + 2210414B05Rik lincRNA lincRNA MGP_C57BL6NJ_T0008008.1 MGP_C57BL6NJ_G0006547.1 mouse_genomes_project 4 43441814 43446313 + lincRNA lincRNA MGP_C57BL6NJ_T0068150.1 MGP_C57BL6NJ_G0029173.1 mouse_genomes_project 4 131063353 131067201 + MGP_C57BL6NJ_P0068150 Pou3f1 protein_coding protein_coding MGP_C57BL6NJ_T0069038.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142682823 142717363 - MGP_C57BL6NJ_P0069038 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069039.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142682830 142717286 - MGP_C57BL6NJ_P0069039 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069040.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142683433 142717286 - MGP_C57BL6NJ_P0069040 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069041.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142684372 142717178 - MGP_C57BL6NJ_P0069041 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069042.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142684629 142689568 - MGP_C57BL6NJ_P0069042 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069043.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142684815 142717176 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069044.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142686107 142687189 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069045.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142691513 142694578 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069046.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142693822 142702368 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069047.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142694502 142706757 - MGP_C57BL6NJ_P0069047 Srrm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069048.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142702563 142706813 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069049.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142706705 142717184 - MGP_C57BL6NJ_P0069049 Srrm1 protein_coding protein_coding MGP_C57BL6NJ_T0069050.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142707931 142717193 - Srrm1 protein_coding retained_intron MGP_C57BL6NJ_T0069051.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142708822 142711499 - MGP_C57BL6NJ_P0069051 Srrm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069052.1 MGP_C57BL6NJ_G0029365.1 mouse_genomes_project 4 142709986 142717244 - Srrm1 protein_coding processed_transcript MGP_C57BL6NJ_T0065893.1 MGP_C57BL6NJ_G0028648.1 mouse_genomes_project 4 43730440 43732381 + MGP_C57BL6NJ_P0065893 Ccin protein_coding protein_coding MGP_C57BL6NJ_T0100339.1 MGP_C57BL6NJ_G0038385.1 mouse_genomes_project 4 35788112 35788219 + Gm23314 snRNA snRNA MGP_C57BL6NJ_T0065879.1 MGP_C57BL6NJ_G0028639.1 mouse_genomes_project 4 43389457 43395265 - MGP_C57BL6NJ_P0065879 Olfr70 protein_coding protein_coding MGP_C57BL6NJ_T0004577.1 MGP_C57BL6NJ_G0003983.1 mouse_genomes_project 4 6389068 6404774 - Gm11817 antisense antisense MGP_C57BL6NJ_T0100355.1 MGP_C57BL6NJ_G0038401.1 mouse_genomes_project 4 64733477 64733584 - Gm24448 snRNA snRNA MGP_C57BL6NJ_T0099102.1 MGP_C57BL6NJ_G0037166.1 mouse_genomes_project 4 59838567 59838652 + Gm26400 rRNA rRNA MGP_C57BL6NJ_T0066936.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103898650 103901033 + MGP_C57BL6NJ_P0066936 Efcab7 protein_coding protein_coding MGP_C57BL6NJ_T0066937.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103898891 103954948 + MGP_C57BL6NJ_P0066937 Efcab7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066938.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103898892 103901033 + MGP_C57BL6NJ_P0066938 Efcab7 protein_coding protein_coding MGP_C57BL6NJ_T0066939.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103898952 103901033 + MGP_C57BL6NJ_P0066939 Efcab7 protein_coding protein_coding MGP_C57BL6NJ_T0066940.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103900846 103954948 + MGP_C57BL6NJ_P0066940 Efcab7 protein_coding protein_coding MGP_C57BL6NJ_T0066941.1 MGP_C57BL6NJ_G0028904.1 mouse_genomes_project 4 103951904 103955126 + MGP_C57BL6NJ_P0066941 Efcab7 protein_coding protein_coding MGP_C57BL6NJ_T0070242.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165513904 165584092 + MGP_C57BL6NJ_P0070242 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070243.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165513907 165584092 + MGP_C57BL6NJ_P0070243 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070244.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165513913 165584092 + MGP_C57BL6NJ_P0070244 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070245.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165515452 165568066 + MGP_C57BL6NJ_P0070245 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070246.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165546554 165579993 + MGP_C57BL6NJ_P0070246 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070247.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165546728 165566193 + Gnb1 protein_coding retained_intron MGP_C57BL6NJ_T0070248.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165551545 165584090 + MGP_C57BL6NJ_P0070248 Gnb1 protein_coding protein_coding MGP_C57BL6NJ_T0070249.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165567906 165580062 + Gnb1 protein_coding retained_intron MGP_C57BL6NJ_T0070250.1 MGP_C57BL6NJ_G0029645.1 mouse_genomes_project 4 165578080 165582510 + Gnb1 protein_coding retained_intron MGP_C57BL6NJ_T0015071.1 MGP_C57BL6NJ_G0013116.1 mouse_genomes_project 4 114513772 114514176 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015191.1 MGP_C57BL6NJ_G0013236.1 mouse_genomes_project 4 153782597 154072588 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018540.1 MGP_C57BL6NJ_G0015958.1 mouse_genomes_project 4 114303292 114413348 + Gm12811 processed_transcript processed_transcript MGP_C57BL6NJ_T0014979.1 MGP_C57BL6NJ_G0013024.1 mouse_genomes_project 4 80716176 80717118 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067867.1 MGP_C57BL6NJ_G0029093.1 mouse_genomes_project 4 124092228 124110791 - MGP_C57BL6NJ_P0067867 Tie1 protein_coding protein_coding MGP_C57BL6NJ_T0067868.1 MGP_C57BL6NJ_G0029093.1 mouse_genomes_project 4 124092228 124111097 - MGP_C57BL6NJ_P0067868 Tie1 protein_coding protein_coding MGP_C57BL6NJ_T0067869.1 MGP_C57BL6NJ_G0029093.1 mouse_genomes_project 4 124099067 124110829 - Tie1 protein_coding processed_transcript MGP_C57BL6NJ_T0004706.1 MGP_C57BL6NJ_G0004081.1 mouse_genomes_project 4 137662523 137664443 - Gm26716 antisense antisense MGP_C57BL6NJ_T0015063.1 MGP_C57BL6NJ_G0013108.1 mouse_genomes_project 4 112947993 112948789 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066738.1 MGP_C57BL6NJ_G0028847.1 mouse_genomes_project 4 91909867 91910686 - MGP_C57BL6NJ_P0066738 Ifna13 protein_coding protein_coding MGP_C57BL6NJ_T0004608.1 MGP_C57BL6NJ_G0004008.1 mouse_genomes_project 4 44812869 44816194 + Gm12493 antisense antisense MGP_C57BL6NJ_T0014917.1 MGP_C57BL6NJ_G0012962.1 mouse_genomes_project 4 55285530 55286101 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103144.1 MGP_C57BL6NJ_G0040938.1 mouse_genomes_project 4 91917132 91917699 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008024.1 MGP_C57BL6NJ_G0006559.1 mouse_genomes_project 4 55267911 55298753 + Gm12478 lincRNA lincRNA MGP_C57BL6NJ_T0067497.1 MGP_C57BL6NJ_G0029020.1 mouse_genomes_project 4 120302244 120320534 + MGP_C57BL6NJ_P0067497 Tal1 protein_coding protein_coding MGP_C57BL6NJ_T0067498.1 MGP_C57BL6NJ_G0029020.1 mouse_genomes_project 4 120303256 120310824 + MGP_C57BL6NJ_P0067498 Tal1 protein_coding protein_coding MGP_C57BL6NJ_T0067499.1 MGP_C57BL6NJ_G0029020.1 mouse_genomes_project 4 120303629 120320007 + MGP_C57BL6NJ_P0067499 Tal1 protein_coding protein_coding MGP_C57BL6NJ_T0067500.1 MGP_C57BL6NJ_G0029020.1 mouse_genomes_project 4 120305326 120319252 + MGP_C57BL6NJ_P0067500 Tal1 protein_coding protein_coding MGP_C57BL6NJ_T0014969.1 MGP_C57BL6NJ_G0013014.1 mouse_genomes_project 4 77545661 77546841 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066380.1 MGP_C57BL6NJ_G0028768.1 mouse_genomes_project 4 63369645 63382926 + MGP_C57BL6NJ_P0066380 Slc31a2 protein_coding protein_coding MGP_C57BL6NJ_T0099268.1 MGP_C57BL6NJ_G0037332.1 mouse_genomes_project 4 139902805 139902970 - Gm22767 scaRNA scaRNA MGP_C57BL6NJ_T0065539.1 MGP_C57BL6NJ_G0028566.1 mouse_genomes_project 4 40486445 40496470 - MGP_C57BL6NJ_P0065539 Nol6 protein_coding protein_coding MGP_C57BL6NJ_T0065540.1 MGP_C57BL6NJ_G0028566.1 mouse_genomes_project 4 40493349 40495318 - Nol6 protein_coding processed_transcript MGP_C57BL6NJ_T0065541.1 MGP_C57BL6NJ_G0028566.1 mouse_genomes_project 4 40493565 40495553 - Nol6 protein_coding processed_transcript MGP_C57BL6NJ_T0065542.1 MGP_C57BL6NJ_G0028566.1 mouse_genomes_project 4 40493897 40494773 - Nol6 protein_coding processed_transcript MGP_C57BL6NJ_T0018547.1 MGP_C57BL6NJ_G0015961.1 mouse_genomes_project 4 122037016 122044835 - C530005A16Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0066898.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904373 103108037 - MGP_C57BL6NJ_P0066898 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066899.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904556 102921997 - Dock7 protein_coding processed_transcript MGP_C57BL6NJ_T0066900.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904557 103107896 - MGP_C57BL6NJ_P0066900 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066901.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904559 103107896 - MGP_C57BL6NJ_P0066901 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066902.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904559 103004360 - MGP_C57BL6NJ_P0066902 Dock7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066903.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102904960 103107896 - MGP_C57BL6NJ_P0066903 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066904.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102913810 102914763 - Dock7 protein_coding retained_intron MGP_C57BL6NJ_T0066905.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102913813 102917944 - Dock7 protein_coding retained_intron MGP_C57BL6NJ_T0066906.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102914215 102924401 - Dock7 protein_coding processed_transcript MGP_C57BL6NJ_T0066907.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102915120 102927673 - MGP_C57BL6NJ_P0066907 Dock7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066908.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102924766 102932847 - Dock7 protein_coding retained_intron MGP_C57BL6NJ_T0066909.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102928542 102931337 - Dock7 protein_coding processed_transcript MGP_C57BL6NJ_T0066910.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102966139 102990289 - MGP_C57BL6NJ_P0066910 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066911.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102968223 102990254 - MGP_C57BL6NJ_P0066911 Dock7 protein_coding protein_coding MGP_C57BL6NJ_T0066912.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102969890 102972220 - Dock7 protein_coding retained_intron MGP_C57BL6NJ_T0066913.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102981562 102989464 - Dock7 protein_coding processed_transcript MGP_C57BL6NJ_T0066914.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 102988924 103036355 - MGP_C57BL6NJ_P0066914 Dock7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066918.1 MGP_C57BL6NJ_G0028897.1 mouse_genomes_project 4 103044774 103050523 - Dock7 protein_coding retained_intron MGP_C57BL6NJ_T0011818.1 MGP_C57BL6NJ_G0009903.1 mouse_genomes_project 4 16367575 16367907 - Gm24419 misc_RNA misc_RNA MGP_C57BL6NJ_T0103138.1 MGP_C57BL6NJ_G0040932.1 mouse_genomes_project 4 63092139 63094460 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010813.1 MGP_C57BL6NJ_G0008898.1 mouse_genomes_project 4 10846820 10846943 - Gm23162 miRNA miRNA MGP_C57BL6NJ_T0014984.1 MGP_C57BL6NJ_G0013029.1 mouse_genomes_project 4 82626599 82627742 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066733.1 MGP_C57BL6NJ_G0028846.1 mouse_genomes_project 4 91893531 91900225 - MGP_C57BL6NJ_P0066733 C87499 protein_coding protein_coding MGP_C57BL6NJ_T0066734.1 MGP_C57BL6NJ_G0028846.1 mouse_genomes_project 4 91893531 91900177 - MGP_C57BL6NJ_P0066734 C87499 protein_coding protein_coding MGP_C57BL6NJ_T0066735.1 MGP_C57BL6NJ_G0028846.1 mouse_genomes_project 4 91894380 91900377 - MGP_C57BL6NJ_P0066735 C87499 protein_coding protein_coding MGP_C57BL6NJ_T0066736.1 MGP_C57BL6NJ_G0028846.1 mouse_genomes_project 4 91895109 91900108 - MGP_C57BL6NJ_P0066736 C87499 protein_coding protein_coding MGP_C57BL6NJ_T0066737.1 MGP_C57BL6NJ_G0028846.1 mouse_genomes_project 4 91895399 91900157 - MGP_C57BL6NJ_P0066737 C87499 protein_coding protein_coding MGP_C57BL6NJ_T0008085.1 MGP_C57BL6NJ_G0006610.1 mouse_genomes_project 4 105558733 105563407 + Gm12798 lincRNA lincRNA MGP_C57BL6NJ_T0069092.1 MGP_C57BL6NJ_G0029377.1 mouse_genomes_project 4 143321386 143340967 + MGP_C57BL6NJ_P0069092 Fuca1 protein_coding protein_coding MGP_C57BL6NJ_T0069093.1 MGP_C57BL6NJ_G0029377.1 mouse_genomes_project 4 143330482 143335385 + Fuca1 protein_coding processed_transcript MGP_C57BL6NJ_T0069094.1 MGP_C57BL6NJ_G0029377.1 mouse_genomes_project 4 143333609 143339954 + Fuca1 protein_coding processed_transcript MGP_C57BL6NJ_T0069095.1 MGP_C57BL6NJ_G0029377.1 mouse_genomes_project 4 143333736 143335954 + Fuca1 protein_coding processed_transcript MGP_C57BL6NJ_T0069096.1 MGP_C57BL6NJ_G0029377.1 mouse_genomes_project 4 143337308 143339954 + Fuca1 protein_coding processed_transcript MGP_C57BL6NJ_T0014886.1 MGP_C57BL6NJ_G0012931.1 mouse_genomes_project 4 47067271 47067634 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014850.1 MGP_C57BL6NJ_G0012895.1 mouse_genomes_project 4 33675299 33675967 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011825.1 MGP_C57BL6NJ_G0009910.1 mouse_genomes_project 4 47669075 47669202 + Gm27601 misc_RNA misc_RNA MGP_C57BL6NJ_T0068493.1 MGP_C57BL6NJ_G0029254.1 mouse_genomes_project 4 136471648 136481273 - MGP_C57BL6NJ_P0068493 Eif3i protein_coding protein_coding MGP_C57BL6NJ_T0068494.1 MGP_C57BL6NJ_G0029254.1 mouse_genomes_project 4 136473017 136475433 - Eif3i protein_coding retained_intron MGP_C57BL6NJ_T0068495.1 MGP_C57BL6NJ_G0029254.1 mouse_genomes_project 4 136473214 136481224 - MGP_C57BL6NJ_P0068495 Eif3i protein_coding protein_coding MGP_C57BL6NJ_T0068496.1 MGP_C57BL6NJ_G0029254.1 mouse_genomes_project 4 136474791 136481224 - Eif3i protein_coding processed_transcript MGP_C57BL6NJ_T0068497.1 MGP_C57BL6NJ_G0029254.1 mouse_genomes_project 4 136478836 136481241 - Eif3i protein_coding retained_intron MGP_C57BL6NJ_T0014884.1 MGP_C57BL6NJ_G0012929.1 mouse_genomes_project 4 46272092 46272527 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100330.1 MGP_C57BL6NJ_G0038376.1 mouse_genomes_project 4 8346739 8346894 - Gm22940 snRNA snRNA MGP_C57BL6NJ_T0014846.1 MGP_C57BL6NJ_G0012891.1 mouse_genomes_project 4 32185159 32185558 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066849.1 MGP_C57BL6NJ_G0028888.1 mouse_genomes_project 4 101019021 101019348 - MGP_C57BL6NJ_P0066849 Gm10192 protein_coding protein_coding MGP_C57BL6NJ_T0014861.1 MGP_C57BL6NJ_G0012906.1 mouse_genomes_project 4 37412282 37412826 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103183.1 MGP_C57BL6NJ_G0040977.1 mouse_genomes_project 4 154051565 156444272 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0065555.1 MGP_C57BL6NJ_G0028569.1 mouse_genomes_project 4 40682275 40705959 - MGP_C57BL6NJ_P0065555 Dcaf12 protein_coding protein_coding MGP_C57BL6NJ_T0014930.1 MGP_C57BL6NJ_G0012975.1 mouse_genomes_project 4 59343090 59343664 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010879.1 MGP_C57BL6NJ_G0008964.1 mouse_genomes_project 4 144159263 144159322 - Gm22180 miRNA miRNA MGP_C57BL6NJ_T0015105.1 MGP_C57BL6NJ_G0013150.1 mouse_genomes_project 4 124462714 124463227 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015050.1 MGP_C57BL6NJ_G0013095.1 mouse_genomes_project 4 109385580 109385848 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015029.1 MGP_C57BL6NJ_G0013074.1 mouse_genomes_project 4 102195843 102196336 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069109.1 MGP_C57BL6NJ_G0029380.1 mouse_genomes_project 4 143371824 143376227 - MGP_C57BL6NJ_P0069109 Lypla2 protein_coding protein_coding MGP_C57BL6NJ_T0069110.1 MGP_C57BL6NJ_G0029380.1 mouse_genomes_project 4 143371824 143375530 - MGP_C57BL6NJ_P0069110 Lypla2 protein_coding protein_coding MGP_C57BL6NJ_T0069111.1 MGP_C57BL6NJ_G0029380.1 mouse_genomes_project 4 143372301 143374071 - Lypla2 protein_coding retained_intron MGP_C57BL6NJ_T0069112.1 MGP_C57BL6NJ_G0029380.1 mouse_genomes_project 4 143372364 143376189 - Lypla2 protein_coding retained_intron MGP_C57BL6NJ_T0069113.1 MGP_C57BL6NJ_G0029380.1 mouse_genomes_project 4 143374250 143376204 - Lypla2 protein_coding retained_intron MGP_C57BL6NJ_T0008188.1 MGP_C57BL6NJ_G0006681.1 mouse_genomes_project 4 148412432 148436676 + Gm13026 lincRNA lincRNA MGP_C57BL6NJ_T0066197.1 MGP_C57BL6NJ_G0028718.1 mouse_genomes_project 4 53542239 53552424 + MGP_C57BL6NJ_P0066197 Nipsnap3b protein_coding protein_coding MGP_C57BL6NJ_T0066198.1 MGP_C57BL6NJ_G0028718.1 mouse_genomes_project 4 53542309 53551940 + MGP_C57BL6NJ_P0066198 Nipsnap3b protein_coding protein_coding MGP_C57BL6NJ_T0066199.1 MGP_C57BL6NJ_G0028718.1 mouse_genomes_project 4 53551339 53551869 + Nipsnap3b protein_coding processed_transcript MGP_C57BL6NJ_T0103153.1 MGP_C57BL6NJ_G0040947.1 mouse_genomes_project 4 117508533 117511892 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0070050.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162129558 162193551 - MGP_C57BL6NJ_P0070050 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070051.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162129560 162222589 - MGP_C57BL6NJ_P0070051 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070052.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162129561 162222243 - MGP_C57BL6NJ_P0070052 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070053.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162131537 162222151 - MGP_C57BL6NJ_P0070053 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070054.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162131598 162193551 - MGP_C57BL6NJ_P0070054 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070055.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162133804 162165805 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070056.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162144078 162173711 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070057.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162144998 162199761 - MGP_C57BL6NJ_P0070057 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0070058.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162146098 162193452 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070059.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162154903 162222262 - Kcnab2 protein_coding retained_intron MGP_C57BL6NJ_T0070060.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162155057 162168906 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070061.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162155887 162161468 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070062.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162169475 162193452 - Kcnab2 protein_coding processed_transcript MGP_C57BL6NJ_T0070063.1 MGP_C57BL6NJ_G0029612.1 mouse_genomes_project 4 162177849 162222213 - MGP_C57BL6NJ_P0070063 Kcnab2 protein_coding protein_coding MGP_C57BL6NJ_T0008078.1 MGP_C57BL6NJ_G0006605.1 mouse_genomes_project 4 104095817 104109854 + Gm12702 lincRNA lincRNA MGP_C57BL6NJ_T0066017.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45747664 45795797 + MGP_C57BL6NJ_P0066017 Stra6l protein_coding protein_coding MGP_C57BL6NJ_T0066018.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45747816 45795797 + MGP_C57BL6NJ_P0066018 Stra6l protein_coding protein_coding MGP_C57BL6NJ_T0066019.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45747947 45795797 + MGP_C57BL6NJ_P0066019 Stra6l protein_coding protein_coding MGP_C57BL6NJ_T0066020.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45747997 45765834 + Stra6l protein_coding processed_transcript MGP_C57BL6NJ_T0066021.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45748078 45794188 + MGP_C57BL6NJ_P0066021 Stra6l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066022.1 MGP_C57BL6NJ_G0028668.1 mouse_genomes_project 4 45781808 45795407 + Stra6l protein_coding retained_intron MGP_C57BL6NJ_T0004666.1 MGP_C57BL6NJ_G0004049.1 mouse_genomes_project 4 114764017 114765093 - Dmrta2os antisense antisense MGP_C57BL6NJ_T0004667.1 MGP_C57BL6NJ_G0004049.1 mouse_genomes_project 4 114764026 114764771 - Dmrta2os antisense antisense MGP_C57BL6NJ_T0101680.1 MGP_C57BL6NJ_G0039726.1 mouse_genomes_project 4 81797277 81797400 - Gm25836 snoRNA snoRNA MGP_C57BL6NJ_T0015083.1 MGP_C57BL6NJ_G0013128.1 mouse_genomes_project 4 119354988 119355742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014802.1 MGP_C57BL6NJ_G0012847.1 mouse_genomes_project 4 20545205 20545907 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068017.1 MGP_C57BL6NJ_G0029133.1 mouse_genomes_project 4 126385230 126389661 + MGP_C57BL6NJ_P0068017 Slfnl1 protein_coding protein_coding MGP_C57BL6NJ_T0004689.1 MGP_C57BL6NJ_G0004068.1 mouse_genomes_project 4 130148604 130178874 - 1700121C08Rik antisense antisense MGP_C57BL6NJ_T0065459.1 MGP_C57BL6NJ_G0028545.1 mouse_genomes_project 4 33734735 33751749 + MGP_C57BL6NJ_P0065459 Cga protein_coding protein_coding MGP_C57BL6NJ_T0065460.1 MGP_C57BL6NJ_G0028545.1 mouse_genomes_project 4 33734744 33751511 + MGP_C57BL6NJ_P0065460 Cga protein_coding protein_coding MGP_C57BL6NJ_T0065461.1 MGP_C57BL6NJ_G0028545.1 mouse_genomes_project 4 33734744 33751557 + MGP_C57BL6NJ_P0065461 Cga protein_coding protein_coding MGP_C57BL6NJ_T0066106.1 MGP_C57BL6NJ_G0028690.1 mouse_genomes_project 4 48142175 48183403 + MGP_C57BL6NJ_P0066106 Nr4a3 protein_coding protein_coding MGP_C57BL6NJ_T0066107.1 MGP_C57BL6NJ_G0028690.1 mouse_genomes_project 4 48142253 48147188 + Nr4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0066108.1 MGP_C57BL6NJ_G0028690.1 mouse_genomes_project 4 48146136 48183404 + MGP_C57BL6NJ_P0066108 Nr4a3 protein_coding protein_coding MGP_C57BL6NJ_T0066109.1 MGP_C57BL6NJ_G0028690.1 mouse_genomes_project 4 48148270 48153762 + Nr4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0066356.1 MGP_C57BL6NJ_G0028758.1 mouse_genomes_project 4 60526350 60569350 + MGP_C57BL6NJ_P0066356 Hsdl2 protein_coding protein_coding MGP_C57BL6NJ_T0066357.1 MGP_C57BL6NJ_G0028758.1 mouse_genomes_project 4 60526432 60569349 + MGP_C57BL6NJ_P0066357 Hsdl2 protein_coding protein_coding MGP_C57BL6NJ_T0066358.1 MGP_C57BL6NJ_G0028758.1 mouse_genomes_project 4 60542933 60551374 + MGP_C57BL6NJ_P0066358 Hsdl2 protein_coding protein_coding MGP_C57BL6NJ_T0070323.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165885195 165887646 + MGP_C57BL6NJ_P0070323 Mxra8 protein_coding protein_coding MGP_C57BL6NJ_T0070324.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165885241 165891504 + MGP_C57BL6NJ_P0070324 Mxra8 protein_coding protein_coding MGP_C57BL6NJ_T0070325.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165885345 165886796 + Mxra8 protein_coding retained_intron MGP_C57BL6NJ_T0070326.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165889866 165890880 + Mxra8 protein_coding retained_intron MGP_C57BL6NJ_T0070327.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165889887 165890993 + Mxra8 protein_coding retained_intron MGP_C57BL6NJ_T0070328.1 MGP_C57BL6NJ_G0029662.1 mouse_genomes_project 4 165890338 165891181 + Mxra8 protein_coding processed_transcript MGP_C57BL6NJ_T0008196.1 MGP_C57BL6NJ_G0006689.1 mouse_genomes_project 4 157600576 157603658 - Gm13200 lincRNA lincRNA MGP_C57BL6NJ_T0067486.1 MGP_C57BL6NJ_G0029017.1 mouse_genomes_project 4 120160573 120161440 - MGP_C57BL6NJ_P0067486 Foxe3 protein_coding protein_coding MGP_C57BL6NJ_T0065281.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19635644 19665625 + MGP_C57BL6NJ_P0065281 Pnisr protein_coding protein_coding MGP_C57BL6NJ_T0065282.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636109 19662905 + MGP_C57BL6NJ_P0065282 Pnisr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065283.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636116 19665617 + MGP_C57BL6NJ_P0065283 Pnisr protein_coding protein_coding MGP_C57BL6NJ_T0065284.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636119 19650536 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065285.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636119 19660492 + MGP_C57BL6NJ_P0065285 Pnisr protein_coding protein_coding MGP_C57BL6NJ_T0065286.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636125 19648058 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065287.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636134 19642986 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065288.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19636142 19652191 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065289.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19642129 19649270 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065290.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19648793 19652111 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065291.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19649066 19650954 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065292.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19660183 19663014 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0065293.1 MGP_C57BL6NJ_G0028505.1 mouse_genomes_project 4 19663353 19664406 + Pnisr protein_coding processed_transcript MGP_C57BL6NJ_T0010887.1 MGP_C57BL6NJ_G0008972.1 mouse_genomes_project 4 147197691 147197748 + Gm24245 miRNA miRNA MGP_C57BL6NJ_T0065047.1 MGP_C57BL6NJ_G0028446.1 mouse_genomes_project 4 2925383 2958937 + MGP_C57BL6NJ_P0065047 Ubxn2b protein_coding protein_coding MGP_C57BL6NJ_T0008074.1 MGP_C57BL6NJ_G0006601.1 mouse_genomes_project 4 99126035 99126848 - Gm29064 lincRNA lincRNA MGP_C57BL6NJ_T0068739.1 MGP_C57BL6NJ_G0029297.1 mouse_genomes_project 4 139561306 139564421 - MGP_C57BL6NJ_P0068739 Atpif1 protein_coding protein_coding MGP_C57BL6NJ_T0068740.1 MGP_C57BL6NJ_G0029297.1 mouse_genomes_project 4 139561306 139564592 - MGP_C57BL6NJ_P0068740 Atpif1 protein_coding protein_coding MGP_C57BL6NJ_T0068741.1 MGP_C57BL6NJ_G0029297.1 mouse_genomes_project 4 139563420 139564528 - Atpif1 protein_coding retained_intron MGP_C57BL6NJ_T0008167.1 MGP_C57BL6NJ_G0006664.1 mouse_genomes_project 4 140169717 140173390 + Gm26615 lincRNA lincRNA MGP_C57BL6NJ_T0069330.1 MGP_C57BL6NJ_G0029435.1 mouse_genomes_project 4 146915125 146927192 - MGP_C57BL6NJ_P0069330 Nbl1 protein_coding protein_coding MGP_C57BL6NJ_T0069331.1 MGP_C57BL6NJ_G0029435.1 mouse_genomes_project 4 146916048 146926305 - Nbl1 protein_coding processed_transcript MGP_C57BL6NJ_T0069332.1 MGP_C57BL6NJ_G0029435.1 mouse_genomes_project 4 146926274 146927167 - Nbl1 protein_coding processed_transcript MGP_C57BL6NJ_T0066507.1 MGP_C57BL6NJ_G0028804.1 mouse_genomes_project 4 73507769 73510092 - MGP_C57BL6NJ_P0066507 Gm11232 protein_coding protein_coding MGP_C57BL6NJ_T0101699.1 MGP_C57BL6NJ_G0039745.1 mouse_genomes_project 4 126989409 126989534 - Gm26186 snoRNA snoRNA MGP_C57BL6NJ_T0100352.1 MGP_C57BL6NJ_G0038398.1 mouse_genomes_project 4 58588664 58588768 + Gm24277 snRNA snRNA MGP_C57BL6NJ_T0068833.1 MGP_C57BL6NJ_G0029317.1 mouse_genomes_project 4 140494071 140549067 + MGP_C57BL6NJ_P0068833 Slc9a1 protein_coding protein_coding MGP_C57BL6NJ_T0068834.1 MGP_C57BL6NJ_G0029317.1 mouse_genomes_project 4 140495009 140537635 + Slc9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068835.1 MGP_C57BL6NJ_G0029317.1 mouse_genomes_project 4 140541804 140545920 + Slc9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068836.1 MGP_C57BL6NJ_G0029317.1 mouse_genomes_project 4 140544845 140545530 + Slc9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068837.1 MGP_C57BL6NJ_G0029317.1 mouse_genomes_project 4 140545336 140547685 + Slc9a1 protein_coding processed_transcript MGP_C57BL6NJ_T0065356.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 30863346 31225521 + MGP_C57BL6NJ_P0065356 Bach2 protein_coding protein_coding MGP_C57BL6NJ_T0065357.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 30863492 31220616 + MGP_C57BL6NJ_P0065357 Bach2 protein_coding protein_coding MGP_C57BL6NJ_T0065358.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 30863619 31134162 + Bach2 protein_coding processed_transcript MGP_C57BL6NJ_T0065359.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 30873206 30944897 + Bach2 protein_coding processed_transcript MGP_C57BL6NJ_T0065360.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 31048328 31225525 + MGP_C57BL6NJ_P0065360 Bach2 protein_coding protein_coding MGP_C57BL6NJ_T0065361.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 31134030 31135152 + Bach2 protein_coding processed_transcript MGP_C57BL6NJ_T0065362.1 MGP_C57BL6NJ_G0028520.1 mouse_genomes_project 4 31212955 31219255 + Bach2 protein_coding processed_transcript MGP_C57BL6NJ_T0067241.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112500515 112524972 - MGP_C57BL6NJ_P0067241 Cpt2 protein_coding protein_coding MGP_C57BL6NJ_T0067242.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112500517 112524922 - MGP_C57BL6NJ_P0067242 Cpt2 protein_coding protein_coding MGP_C57BL6NJ_T0067243.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112504165 112524907 - MGP_C57BL6NJ_P0067243 Cpt2 protein_coding protein_coding MGP_C57BL6NJ_T0067244.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112504252 112509313 - Cpt2 protein_coding retained_intron MGP_C57BL6NJ_T0067245.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112504399 112524809 - Cpt2 protein_coding processed_transcript MGP_C57BL6NJ_T0067246.1 MGP_C57BL6NJ_G0028967.1 mouse_genomes_project 4 112504754 112524950 - MGP_C57BL6NJ_P0067246 Cpt2 protein_coding protein_coding MGP_C57BL6NJ_T0069584.1 MGP_C57BL6NJ_G0029496.1 mouse_genomes_project 4 151925714 151927655 - MGP_C57BL6NJ_P0069584 protein_coding protein_coding MGP_C57BL6NJ_T0066676.1 MGP_C57BL6NJ_G0028832.1 mouse_genomes_project 4 89613048 89646912 - MGP_C57BL6NJ_P0066676 Haus6 protein_coding protein_coding MGP_C57BL6NJ_T0066677.1 MGP_C57BL6NJ_G0028832.1 mouse_genomes_project 4 89619856 89646912 - Haus6 protein_coding processed_transcript MGP_C57BL6NJ_T0066678.1 MGP_C57BL6NJ_G0028832.1 mouse_genomes_project 4 89637697 89646876 - Haus6 protein_coding processed_transcript MGP_C57BL6NJ_T0066679.1 MGP_C57BL6NJ_G0028832.1 mouse_genomes_project 4 89640461 89646906 - MGP_C57BL6NJ_P0066679 Haus6 protein_coding protein_coding MGP_C57BL6NJ_T0068266.1 MGP_C57BL6NJ_G0029201.1 mouse_genomes_project 4 132850968 132880177 + MGP_C57BL6NJ_P0068266 Col8a2 protein_coding protein_coding MGP_C57BL6NJ_T0068267.1 MGP_C57BL6NJ_G0029201.1 mouse_genomes_project 4 132866023 132875632 + MGP_C57BL6NJ_P0068267 Col8a2 protein_coding protein_coding MGP_C57BL6NJ_T0069015.1 MGP_C57BL6NJ_G0029359.1 mouse_genomes_project 4 142189667 142228143 + MGP_C57BL6NJ_P0069015 Rhd protein_coding protein_coding MGP_C57BL6NJ_T0069016.1 MGP_C57BL6NJ_G0029359.1 mouse_genomes_project 4 142206148 142222277 + Rhd protein_coding retained_intron MGP_C57BL6NJ_T0008058.1 MGP_C57BL6NJ_G0006588.1 mouse_genomes_project 4 87038616 87042556 - Gm12414 lincRNA lincRNA MGP_C57BL6NJ_T0069402.1 MGP_C57BL6NJ_G0029451.1 mouse_genomes_project 4 148710820 148738975 + MGP_C57BL6NJ_P0069402 Rcc2 protein_coding protein_coding MGP_C57BL6NJ_T0069403.1 MGP_C57BL6NJ_G0029451.1 mouse_genomes_project 4 148711752 148738975 + MGP_C57BL6NJ_P0069403 Rcc2 protein_coding protein_coding MGP_C57BL6NJ_T0069404.1 MGP_C57BL6NJ_G0029451.1 mouse_genomes_project 4 148711752 148723147 + MGP_C57BL6NJ_P0069404 Rcc2 protein_coding protein_coding MGP_C57BL6NJ_T0069405.1 MGP_C57BL6NJ_G0029451.1 mouse_genomes_project 4 148727027 148731891 + Rcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0069406.1 MGP_C57BL6NJ_G0029451.1 mouse_genomes_project 4 148727054 148731799 + Rcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0098877.1 MGP_C57BL6NJ_G0036941.1 mouse_genomes_project 4 165722413 165724553 + pseudogene pseudogene MGP_C57BL6NJ_T0065369.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31304176 31430091 + MGP_C57BL6NJ_P0065369 Mdn1 protein_coding protein_coding MGP_C57BL6NJ_T0065370.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31304176 31430101 + MGP_C57BL6NJ_P0065370 Mdn1 protein_coding protein_coding MGP_C57BL6NJ_T0065371.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31304240 31311247 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065372.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31320212 31328220 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065373.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31344700 31345781 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065374.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31355661 31430082 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065375.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31373917 31382462 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065376.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31376881 31379237 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065377.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31401551 31405639 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065378.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31401551 31403680 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0065379.1 MGP_C57BL6NJ_G0028523.1 mouse_genomes_project 4 31414888 31417733 + Mdn1 protein_coding processed_transcript MGP_C57BL6NJ_T0008136.1 MGP_C57BL6NJ_G0006646.1 mouse_genomes_project 4 135860541 135868416 - 1700086P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0069723.1 MGP_C57BL6NJ_G0029555.1 mouse_genomes_project 4 157756895 157762166 - MGP_C57BL6NJ_P0069723 Angptl7 protein_coding protein_coding MGP_C57BL6NJ_T0014813.1 MGP_C57BL6NJ_G0012858.1 mouse_genomes_project 4 23985855 23986240 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015201.1 MGP_C57BL6NJ_G0013246.1 mouse_genomes_project 4 154076965 154077103 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010871.1 MGP_C57BL6NJ_G0008956.1 mouse_genomes_project 4 140301073 140301135 + Mir7017 miRNA miRNA MGP_C57BL6NJ_T0103149.1 MGP_C57BL6NJ_G0040943.1 mouse_genomes_project 4 99939351 99939524 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008049.1 MGP_C57BL6NJ_G0006581.1 mouse_genomes_project 4 84520312 84528282 + lincRNA lincRNA MGP_C57BL6NJ_T0010807.1 MGP_C57BL6NJ_G0008892.1 mouse_genomes_project 4 6633165 6633237 + Gm25677 miRNA miRNA MGP_C57BL6NJ_T0015023.1 MGP_C57BL6NJ_G0013068.1 mouse_genomes_project 4 99285867 99286196 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069090.1 MGP_C57BL6NJ_G0029376.1 mouse_genomes_project 4 143295066 143320859 + MGP_C57BL6NJ_P0069090 Cnr2 protein_coding protein_coding MGP_C57BL6NJ_T0069091.1 MGP_C57BL6NJ_G0029376.1 mouse_genomes_project 4 143311459 143320859 + MGP_C57BL6NJ_P0069091 Cnr2 protein_coding protein_coding MGP_C57BL6NJ_T0008065.1 MGP_C57BL6NJ_G0006593.1 mouse_genomes_project 4 93559485 93563914 + Gm12629 lincRNA lincRNA MGP_C57BL6NJ_T0067077.1 MGP_C57BL6NJ_G0028938.1 mouse_genomes_project 4 110263697 110270067 + MGP_C57BL6NJ_P0067077 Gm12728 protein_coding protein_coding MGP_C57BL6NJ_T0067078.1 MGP_C57BL6NJ_G0028938.1 mouse_genomes_project 4 110264362 110270067 + MGP_C57BL6NJ_P0067078 Gm12728 protein_coding protein_coding MGP_C57BL6NJ_T0067079.1 MGP_C57BL6NJ_G0028938.1 mouse_genomes_project 4 110269857 110270350 + Gm12728 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0018560.1 MGP_C57BL6NJ_G0015968.1 mouse_genomes_project 4 132889620 132891259 + Gm12945 processed_transcript processed_transcript MGP_C57BL6NJ_T0011834.1 MGP_C57BL6NJ_G0009919.1 mouse_genomes_project 4 92759304 92759453 + Gm27580 misc_RNA misc_RNA MGP_C57BL6NJ_T0015016.1 MGP_C57BL6NJ_G0013061.1 mouse_genomes_project 4 96535101 96535594 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068553.1 MGP_C57BL6NJ_G0029262.1 mouse_genomes_project 4 136597878 136643757 - MGP_C57BL6NJ_P0068553 Khdrbs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068554.1 MGP_C57BL6NJ_G0029262.1 mouse_genomes_project 4 136598540 136608535 - Khdrbs1 protein_coding retained_intron MGP_C57BL6NJ_T0068555.1 MGP_C57BL6NJ_G0029262.1 mouse_genomes_project 4 136610678 136643620 - MGP_C57BL6NJ_P0068555 Khdrbs1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068556.1 MGP_C57BL6NJ_G0029262.1 mouse_genomes_project 4 136623900 136643763 - Khdrbs1 protein_coding retained_intron MGP_C57BL6NJ_T0066563.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84019950 84183239 - MGP_C57BL6NJ_P0066563 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066564.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84019955 84076748 - MGP_C57BL6NJ_P0066564 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066565.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84019955 84183241 - MGP_C57BL6NJ_P0066565 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066566.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84019966 84183131 - MGP_C57BL6NJ_P0066566 Mpdz protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066567.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84020685 84026987 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0066568.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84020788 84037035 - MGP_C57BL6NJ_P0066568 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066569.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84024438 84026148 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0066570.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84024822 84034063 - MGP_C57BL6NJ_P0066570 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066571.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84026025 84029525 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0066572.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84031341 84034280 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0066573.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84034009 84034625 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0066574.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84048221 84061945 - MGP_C57BL6NJ_P0066574 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066575.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84061767 84073917 - MGP_C57BL6NJ_P0066575 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066576.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84061789 84076706 - MGP_C57BL6NJ_P0066576 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066577.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84094153 84108940 - MGP_C57BL6NJ_P0066577 Mpdz protein_coding protein_coding MGP_C57BL6NJ_T0066578.1 MGP_C57BL6NJ_G0028817.1 mouse_genomes_project 4 84154848 84183249 - Mpdz protein_coding retained_intron MGP_C57BL6NJ_T0004755.1 MGP_C57BL6NJ_G0004119.1 mouse_genomes_project 4 158701436 158701881 + Ube4bos2 antisense antisense MGP_C57BL6NJ_T0069306.1 MGP_C57BL6NJ_G0029426.1 mouse_genomes_project 4 146536054 146543148 - MGP_C57BL6NJ_P0069306 Pla2g2f protein_coding protein_coding MGP_C57BL6NJ_T0067863.1 MGP_C57BL6NJ_G0029092.1 mouse_genomes_project 4 124063378 124079286 - MGP_C57BL6NJ_P0067863 Mpl protein_coding protein_coding MGP_C57BL6NJ_T0067864.1 MGP_C57BL6NJ_G0029092.1 mouse_genomes_project 4 124063380 124079268 - MGP_C57BL6NJ_P0067864 Mpl protein_coding protein_coding MGP_C57BL6NJ_T0067865.1 MGP_C57BL6NJ_G0029092.1 mouse_genomes_project 4 124064235 124079230 - MGP_C57BL6NJ_P0067865 Mpl protein_coding protein_coding MGP_C57BL6NJ_T0067866.1 MGP_C57BL6NJ_G0029092.1 mouse_genomes_project 4 124064392 124079223 - MGP_C57BL6NJ_P0067866 Mpl protein_coding protein_coding MGP_C57BL6NJ_T0065746.1 MGP_C57BL6NJ_G0028619.1 mouse_genomes_project 4 42894399 42981453 + Atp8b5 protein_coding retained_intron MGP_C57BL6NJ_T0065747.1 MGP_C57BL6NJ_G0028619.1 mouse_genomes_project 4 42894410 43014378 + MGP_C57BL6NJ_P0065747 Atp8b5 protein_coding protein_coding MGP_C57BL6NJ_T0065748.1 MGP_C57BL6NJ_G0028619.1 mouse_genomes_project 4 42894425 43014380 + MGP_C57BL6NJ_P0065748 Atp8b5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065749.1 MGP_C57BL6NJ_G0028619.1 mouse_genomes_project 4 42894425 42958863 + MGP_C57BL6NJ_P0065749 Atp8b5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065750.1 MGP_C57BL6NJ_G0028619.1 mouse_genomes_project 4 42894431 42960539 + MGP_C57BL6NJ_P0065750 Atp8b5 protein_coding protein_coding MGP_C57BL6NJ_T0069608.1 MGP_C57BL6NJ_G0029515.1 mouse_genomes_project 4 152497991 152502919 - MGP_C57BL6NJ_P0069608 protein_coding protein_coding MGP_C57BL6NJ_T0069609.1 MGP_C57BL6NJ_G0029515.1 mouse_genomes_project 4 152499856 152503220 - MGP_C57BL6NJ_P0069609 protein_coding protein_coding MGP_C57BL6NJ_T0066087.1 MGP_C57BL6NJ_G0028685.1 mouse_genomes_project 4 47121916 47149873 + MGP_C57BL6NJ_P0066087 Galnt12 protein_coding protein_coding MGP_C57BL6NJ_T0065506.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40045936 40047582 + Dnaja1 protein_coding processed_transcript MGP_C57BL6NJ_T0065507.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40046345 40054411 + Dnaja1 protein_coding processed_transcript MGP_C57BL6NJ_T0065508.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40046708 40061732 + MGP_C57BL6NJ_P0065508 Dnaja1 protein_coding protein_coding MGP_C57BL6NJ_T0065509.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40046716 40055977 + MGP_C57BL6NJ_P0065509 Dnaja1 protein_coding protein_coding MGP_C57BL6NJ_T0065510.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40046731 40052382 + MGP_C57BL6NJ_P0065510 Dnaja1 protein_coding protein_coding MGP_C57BL6NJ_T0065511.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40046903 40050407 + MGP_C57BL6NJ_P0065511 Dnaja1 protein_coding protein_coding MGP_C57BL6NJ_T0065512.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40047148 40047859 + Dnaja1 protein_coding processed_transcript MGP_C57BL6NJ_T0065513.1 MGP_C57BL6NJ_G0028557.1 mouse_genomes_project 4 40047835 40056481 + Dnaja1 protein_coding processed_transcript MGP_C57BL6NJ_T0098873.1 MGP_C57BL6NJ_G0036937.1 mouse_genomes_project 4 102698026 102698114 + pseudogene pseudogene MGP_C57BL6NJ_T0015078.1 MGP_C57BL6NJ_G0013123.1 mouse_genomes_project 4 116708138 116709127 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067073.1 MGP_C57BL6NJ_G0028935.1 mouse_genomes_project 4 109326310 109434325 + MGP_C57BL6NJ_P0067073 1700024P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0067074.1 MGP_C57BL6NJ_G0028935.1 mouse_genomes_project 4 109326378 109434325 + MGP_C57BL6NJ_P0067074 1700024P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0068622.1 MGP_C57BL6NJ_G0029275.1 mouse_genomes_project 4 137317612 137357267 + MGP_C57BL6NJ_P0068622 Snrnp40 protein_coding protein_coding MGP_C57BL6NJ_T0068623.1 MGP_C57BL6NJ_G0029275.1 mouse_genomes_project 4 137317674 137342823 + Snrnp40 protein_coding processed_transcript MGP_C57BL6NJ_T0068624.1 MGP_C57BL6NJ_G0029275.1 mouse_genomes_project 4 137320107 137322913 + Snrnp40 protein_coding processed_transcript MGP_C57BL6NJ_T0068625.1 MGP_C57BL6NJ_G0029275.1 mouse_genomes_project 4 137352268 137355869 + Snrnp40 protein_coding processed_transcript MGP_C57BL6NJ_T0069277.1 MGP_C57BL6NJ_G0029416.1 mouse_genomes_project 4 145974290 146039980 + MGP_C57BL6NJ_P0069277 Kif17 protein_coding protein_coding MGP_C57BL6NJ_T0069280.1 MGP_C57BL6NJ_G0029416.1 mouse_genomes_project 4 145986088 146039505 + MGP_C57BL6NJ_P0069280 Kif17 protein_coding protein_coding MGP_C57BL6NJ_T0069281.1 MGP_C57BL6NJ_G0029416.1 mouse_genomes_project 4 145986328 146039395 + MGP_C57BL6NJ_P0069281 Kif17 protein_coding protein_coding MGP_C57BL6NJ_T0069282.1 MGP_C57BL6NJ_G0029416.1 mouse_genomes_project 4 145986355 146012628 + Kif17 protein_coding retained_intron MGP_C57BL6NJ_T0067466.1 MGP_C57BL6NJ_G0029008.1 mouse_genomes_project 4 117367519 117422105 - MGP_C57BL6NJ_P0067466 Skint9 protein_coding protein_coding MGP_C57BL6NJ_T0008185.1 MGP_C57BL6NJ_G0006678.1 mouse_genomes_project 4 148351874 148356811 + Gm13016 lincRNA lincRNA MGP_C57BL6NJ_T0065495.1 MGP_C57BL6NJ_G0028553.1 mouse_genomes_project 4 39556069 39566319 - MGP_C57BL6NJ_P0065495 Topors protein_coding protein_coding MGP_C57BL6NJ_T0101674.1 MGP_C57BL6NJ_G0039720.1 mouse_genomes_project 4 74719296 74719434 - Gm25653 snoRNA snoRNA MGP_C57BL6NJ_T0067464.1 MGP_C57BL6NJ_G0029007.1 mouse_genomes_project 4 117213096 117286656 + MGP_C57BL6NJ_P0067464 Skint3 protein_coding protein_coding MGP_C57BL6NJ_T0067465.1 MGP_C57BL6NJ_G0029007.1 mouse_genomes_project 4 117213096 117286656 + MGP_C57BL6NJ_P0067465 Skint3 protein_coding protein_coding MGP_C57BL6NJ_T0070120.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164089746 164204835 + MGP_C57BL6NJ_P0070120 Megf6 protein_coding protein_coding MGP_C57BL6NJ_T0070121.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164160586 164200861 + MGP_C57BL6NJ_P0070121 Megf6 protein_coding protein_coding MGP_C57BL6NJ_T0070122.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164174502 164179136 + Megf6 protein_coding retained_intron MGP_C57BL6NJ_T0070123.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164193747 164204306 + Megf6 protein_coding processed_transcript MGP_C57BL6NJ_T0070124.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164195303 164199663 + MGP_C57BL6NJ_P0070124 Megf6 protein_coding protein_coding MGP_C57BL6NJ_T0070125.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164198918 164203250 + Megf6 protein_coding retained_intron MGP_C57BL6NJ_T0070126.1 MGP_C57BL6NJ_G0029624.1 mouse_genomes_project 4 164199013 164200161 + Megf6 protein_coding retained_intron MGP_C57BL6NJ_T0070347.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165938198 165939833 - Pusl1 protein_coding processed_transcript MGP_C57BL6NJ_T0070349.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165939181 165942101 - MGP_C57BL6NJ_P0070349 Pusl1 protein_coding protein_coding MGP_C57BL6NJ_T0070350.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165940699 165941529 - Pusl1 protein_coding retained_intron MGP_C57BL6NJ_T0070351.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165940813 165942046 - Pusl1 protein_coding retained_intron MGP_C57BL6NJ_T0070352.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165941097 165942075 - Pusl1 protein_coding retained_intron MGP_C57BL6NJ_T0070353.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165941158 165942089 - Pusl1 protein_coding processed_transcript MGP_C57BL6NJ_T0070354.1 MGP_C57BL6NJ_G0029667.1 mouse_genomes_project 4 165941371 165942048 - Pusl1 protein_coding retained_intron MGP_C57BL6NJ_T0066525.1 MGP_C57BL6NJ_G0028809.1 mouse_genomes_project 4 76039926 76247270 + MGP_C57BL6NJ_P0066525 Frmd3 protein_coding protein_coding MGP_C57BL6NJ_T0066526.1 MGP_C57BL6NJ_G0028809.1 mouse_genomes_project 4 76039928 76235112 + MGP_C57BL6NJ_P0066526 Frmd3 protein_coding protein_coding MGP_C57BL6NJ_T0066527.1 MGP_C57BL6NJ_G0028809.1 mouse_genomes_project 4 76214139 76234185 + Frmd3 protein_coding processed_transcript MGP_C57BL6NJ_T0067777.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123416613 123425771 + MGP_C57BL6NJ_P0067777 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067778.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123416951 123457845 + MGP_C57BL6NJ_P0067778 Slc6a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067779.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123416996 123451949 + MGP_C57BL6NJ_P0067779 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067780.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123417056 123439831 + Slc6a9 protein_coding processed_transcript MGP_C57BL6NJ_T0067781.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123431854 123446664 + MGP_C57BL6NJ_P0067781 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067782.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123431860 123446664 + MGP_C57BL6NJ_P0067782 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067783.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123432031 123451077 + MGP_C57BL6NJ_P0067783 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067784.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123438151 123440087 + MGP_C57BL6NJ_P0067784 Slc6a9 protein_coding protein_coding MGP_C57BL6NJ_T0067785.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123438203 123438687 + Slc6a9 protein_coding processed_transcript MGP_C57BL6NJ_T0067799.1 MGP_C57BL6NJ_G0029078.1 mouse_genomes_project 4 123456730 123457847 + Slc6a9 protein_coding retained_intron MGP_C57BL6NJ_T0015214.1 MGP_C57BL6NJ_G0013259.1 mouse_genomes_project 4 158420728 158421048 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067087.1 MGP_C57BL6NJ_G0028943.1 mouse_genomes_project 4 111092215 111121351 - MGP_C57BL6NJ_P0067087 Lexm protein_coding protein_coding MGP_C57BL6NJ_T0067088.1 MGP_C57BL6NJ_G0028943.1 mouse_genomes_project 4 111092215 111121354 - MGP_C57BL6NJ_P0067088 Lexm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067089.1 MGP_C57BL6NJ_G0028943.1 mouse_genomes_project 4 111092215 111108733 - MGP_C57BL6NJ_P0067089 Lexm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067090.1 MGP_C57BL6NJ_G0028943.1 mouse_genomes_project 4 111092616 111121351 - MGP_C57BL6NJ_P0067090 Lexm protein_coding protein_coding MGP_C57BL6NJ_T0065145.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8328580 8371558 - MGP_C57BL6NJ_P0065145 Dpy19l4 protein_coding protein_coding MGP_C57BL6NJ_T0065146.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8328580 8390456 - MGP_C57BL6NJ_P0065146 Dpy19l4 protein_coding protein_coding MGP_C57BL6NJ_T0065147.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8343547 8390456 - MGP_C57BL6NJ_P0065147 Dpy19l4 protein_coding protein_coding MGP_C57BL6NJ_T0065148.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8347449 8390394 - MGP_C57BL6NJ_P0065148 Dpy19l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065149.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8371619 8390366 - Dpy19l4 protein_coding processed_transcript MGP_C57BL6NJ_T0065150.1 MGP_C57BL6NJ_G0028463.1 mouse_genomes_project 4 8385313 8390419 - Dpy19l4 protein_coding processed_transcript MGP_C57BL6NJ_T0099106.1 MGP_C57BL6NJ_G0037170.1 mouse_genomes_project 4 116329235 116329351 - n-R5s191 rRNA rRNA MGP_C57BL6NJ_T0101659.1 MGP_C57BL6NJ_G0039705.1 mouse_genomes_project 4 50533838 50533970 + Gm25485 snoRNA snoRNA MGP_C57BL6NJ_T0100385.1 MGP_C57BL6NJ_G0038431.1 mouse_genomes_project 4 122730149 122730265 + Gm23143 snRNA snRNA MGP_C57BL6NJ_T0065880.1 MGP_C57BL6NJ_G0028640.1 mouse_genomes_project 4 43400085 43404689 - MGP_C57BL6NJ_P0065880 Olfr71 protein_coding protein_coding MGP_C57BL6NJ_T0065881.1 MGP_C57BL6NJ_G0028640.1 mouse_genomes_project 4 43400085 43401024 - MGP_C57BL6NJ_P0065881 Olfr71 protein_coding protein_coding MGP_C57BL6NJ_T0067568.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121425528 121451880 - MGP_C57BL6NJ_P0067568 protein_coding protein_coding MGP_C57BL6NJ_T0067569.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121425691 121446366 - MGP_C57BL6NJ_P0067569 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067570.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121426593 121451384 - MGP_C57BL6NJ_P0067570 protein_coding protein_coding MGP_C57BL6NJ_T0067571.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121434336 121442318 - protein_coding processed_transcript MGP_C57BL6NJ_T0067572.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121439785 121446235 - protein_coding retained_intron MGP_C57BL6NJ_T0067573.1 MGP_C57BL6NJ_G0029038.1 mouse_genomes_project 4 121446335 121447272 - protein_coding processed_transcript MGP_C57BL6NJ_T0100374.1 MGP_C57BL6NJ_G0038420.1 mouse_genomes_project 4 113129925 113130032 - Gm24967 snRNA snRNA MGP_C57BL6NJ_T0014757.1 MGP_C57BL6NJ_G0012802.1 mouse_genomes_project 4 8204649 8205210 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014926.1 MGP_C57BL6NJ_G0012971.1 mouse_genomes_project 4 56877203 56877519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008169.1 MGP_C57BL6NJ_G0006666.1 mouse_genomes_project 4 142464018 142466245 - Gm16225 lincRNA lincRNA MGP_C57BL6NJ_T0068101.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129506257 129533615 + Pabpc4 protein_coding processed_transcript MGP_C57BL6NJ_T0068102.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129529751 129549744 + MGP_C57BL6NJ_P0068102 Pabpc4 protein_coding protein_coding MGP_C57BL6NJ_T0068103.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129529758 129549652 + MGP_C57BL6NJ_P0068103 Pabpc4 protein_coding protein_coding MGP_C57BL6NJ_T0068104.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129529771 129549641 + MGP_C57BL6NJ_P0068104 Pabpc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068105.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129529837 129549651 + MGP_C57BL6NJ_P0068105 Pabpc4 protein_coding protein_coding MGP_C57BL6NJ_T0068106.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129530021 129549652 + MGP_C57BL6NJ_P0068106 Pabpc4 protein_coding protein_coding MGP_C57BL6NJ_T0068107.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129543594 129548825 + Pabpc4 protein_coding processed_transcript MGP_C57BL6NJ_T0068108.1 MGP_C57BL6NJ_G0029162.1 mouse_genomes_project 4 129547998 129549651 + Pabpc4 protein_coding retained_intron MGP_C57BL6NJ_T0068661.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138768273 138794742 + MGP_C57BL6NJ_P0068661 Mecr protein_coding protein_coding MGP_C57BL6NJ_T0068662.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138768296 138787795 + MGP_C57BL6NJ_P0068662 Mecr protein_coding protein_coding MGP_C57BL6NJ_T0068663.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138768308 138768811 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068664.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138780617 138787930 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068665.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138780676 138785103 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068666.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138784668 138792288 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068667.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138784694 138794742 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068668.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138787164 138792030 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068669.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138788641 138794557 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0068670.1 MGP_C57BL6NJ_G0029282.1 mouse_genomes_project 4 138791733 138794732 + Mecr protein_coding processed_transcript MGP_C57BL6NJ_T0065611.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41217888 41221356 + MGP_C57BL6NJ_P0065611 Galt protein_coding protein_coding MGP_C57BL6NJ_T0065612.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41217888 41221356 + MGP_C57BL6NJ_P0065612 Galt protein_coding protein_coding MGP_C57BL6NJ_T0065613.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41217913 41220210 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065614.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41217913 41219108 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065615.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218418 41220141 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065616.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218500 41219933 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065617.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218621 41220141 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065619.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218870 41221356 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065620.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218914 41220899 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0065621.1 MGP_C57BL6NJ_G0028584.1 mouse_genomes_project 4 41218922 41220439 + Galt protein_coding processed_transcript MGP_C57BL6NJ_T0010816.1 MGP_C57BL6NJ_G0008901.1 mouse_genomes_project 4 20586778 20586881 + Gm24078 miRNA miRNA MGP_C57BL6NJ_T0066143.1 MGP_C57BL6NJ_G0028699.1 mouse_genomes_project 4 49639644 49654930 - MGP_C57BL6NJ_P0066143 protein_coding protein_coding MGP_C57BL6NJ_T0066144.1 MGP_C57BL6NJ_G0028699.1 mouse_genomes_project 4 49639648 49654933 - MGP_C57BL6NJ_P0066144 protein_coding protein_coding MGP_C57BL6NJ_T0066147.1 MGP_C57BL6NJ_G0028699.1 mouse_genomes_project 4 49654761 49677748 - MGP_C57BL6NJ_P0066147 protein_coding protein_coding MGP_C57BL6NJ_T0066148.1 MGP_C57BL6NJ_G0028699.1 mouse_genomes_project 4 49662711 49677715 - protein_coding processed_transcript MGP_C57BL6NJ_T0066496.1 MGP_C57BL6NJ_G0028801.1 mouse_genomes_project 4 70301016 70507272 - MGP_C57BL6NJ_P0066496 Brinp1 protein_coding protein_coding MGP_C57BL6NJ_T0066497.1 MGP_C57BL6NJ_G0028801.1 mouse_genomes_project 4 70337536 70385781 - Brinp1 protein_coding processed_transcript MGP_C57BL6NJ_T0066498.1 MGP_C57BL6NJ_G0028801.1 mouse_genomes_project 4 70370938 70373676 - Brinp1 protein_coding processed_transcript MGP_C57BL6NJ_T0068455.1 MGP_C57BL6NJ_G0029244.1 mouse_genomes_project 4 136184799 136208194 + MGP_C57BL6NJ_P0068455 Zbtb8os protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068456.1 MGP_C57BL6NJ_G0029244.1 mouse_genomes_project 4 136185111 136198745 + MGP_C57BL6NJ_P0068456 Zbtb8os protein_coding protein_coding MGP_C57BL6NJ_T0068457.1 MGP_C57BL6NJ_G0029244.1 mouse_genomes_project 4 136185151 136198888 + MGP_C57BL6NJ_P0068457 Zbtb8os protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068458.1 MGP_C57BL6NJ_G0029244.1 mouse_genomes_project 4 136195825 136198785 + Zbtb8os protein_coding retained_intron MGP_C57BL6NJ_T0015042.1 MGP_C57BL6NJ_G0013087.1 mouse_genomes_project 4 105336147 105336319 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001558.1 MGP_C57BL6NJ_G0001458.1 mouse_genomes_project 4 142820784 142821114 + TEC TEC MGP_C57BL6NJ_T0067227.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483352 112492924 + MGP_C57BL6NJ_P0067227 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067228.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483364 112490520 + MGP_C57BL6NJ_P0067228 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067229.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483388 112490802 + 0610037L13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0067230.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483402 112490658 + MGP_C57BL6NJ_P0067230 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067231.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483405 112489401 + MGP_C57BL6NJ_P0067231 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067232.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483408 112488886 + MGP_C57BL6NJ_P0067232 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067233.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483437 112490658 + MGP_C57BL6NJ_P0067233 0610037L13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067234.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483438 112491342 + MGP_C57BL6NJ_P0067234 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067235.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483447 112485543 + MGP_C57BL6NJ_P0067235 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0067236.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483658 112490704 + 0610037L13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0067237.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483766 112490597 + 0610037L13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0067238.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112483779 112490658 + 0610037L13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0067239.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112486713 112490593 + 0610037L13Rik protein_coding retained_intron MGP_C57BL6NJ_T0067240.1 MGP_C57BL6NJ_G0028966.1 mouse_genomes_project 4 112486909 112490658 + MGP_C57BL6NJ_P0067240 0610037L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0015189.1 MGP_C57BL6NJ_G0013234.1 mouse_genomes_project 4 152939591 152942654 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067870.1 MGP_C57BL6NJ_G0029094.1 mouse_genomes_project 4 124147277 124150134 + MGP_C57BL6NJ_P0067870 2610528J11Rik protein_coding protein_coding MGP_C57BL6NJ_T0067871.1 MGP_C57BL6NJ_G0029094.1 mouse_genomes_project 4 124147521 124150507 + MGP_C57BL6NJ_P0067871 2610528J11Rik protein_coding protein_coding MGP_C57BL6NJ_T0069690.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157355133 157368742 + Mad2l2 protein_coding processed_transcript MGP_C57BL6NJ_T0069691.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157368132 157375108 + MGP_C57BL6NJ_P0069691 Mad2l2 protein_coding protein_coding MGP_C57BL6NJ_T0069692.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157368674 157375107 + MGP_C57BL6NJ_P0069692 Mad2l2 protein_coding protein_coding MGP_C57BL6NJ_T0069693.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157368712 157373447 + Mad2l2 protein_coding retained_intron MGP_C57BL6NJ_T0069694.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157368745 157375671 + MGP_C57BL6NJ_P0069694 Mad2l2 protein_coding protein_coding MGP_C57BL6NJ_T0069695.1 MGP_C57BL6NJ_G0029548.1 mouse_genomes_project 4 157374776 157375438 + Mad2l2 protein_coding retained_intron MGP_C57BL6NJ_T0065420.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33379768 33429263 - MGP_C57BL6NJ_P0065420 Orc3 protein_coding protein_coding MGP_C57BL6NJ_T0065421.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33379768 33429232 - MGP_C57BL6NJ_P0065421 Orc3 protein_coding protein_coding MGP_C57BL6NJ_T0065422.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33380537 33413069 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065423.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33381370 33385874 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065424.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33386620 33429230 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065425.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33405799 33408455 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065426.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33406325 33429212 - MGP_C57BL6NJ_P0065426 Orc3 protein_coding protein_coding MGP_C57BL6NJ_T0065427.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33413019 33429222 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065428.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33413107 33429228 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065429.1 MGP_C57BL6NJ_G0028538.1 mouse_genomes_project 4 33413693 33429223 - Orc3 protein_coding processed_transcript MGP_C57BL6NJ_T0004625.1 MGP_C57BL6NJ_G0004023.1 mouse_genomes_project 4 73929541 73930223 + Gm11250 antisense antisense MGP_C57BL6NJ_T0100387.1 MGP_C57BL6NJ_G0038433.1 mouse_genomes_project 4 125311851 125311958 + Rnu6-ps2 snRNA snRNA MGP_C57BL6NJ_T0066850.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101463999 - E130114P18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0066851.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101463975 - E130114P18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0066852.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101464015 - E130114P18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0066853.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101463986 - MGP_C57BL6NJ_P0066853 E130114P18Rik protein_coding protein_coding MGP_C57BL6NJ_T0066854.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101676628 - MGP_C57BL6NJ_P0066854 E130114P18Rik protein_coding protein_coding MGP_C57BL6NJ_T0066855.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101442597 101464008 - MGP_C57BL6NJ_P0066855 E130114P18Rik protein_coding protein_coding MGP_C57BL6NJ_T0066856.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101443654 101578208 - MGP_C57BL6NJ_P0066856 E130114P18Rik protein_coding protein_coding MGP_C57BL6NJ_T0066857.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101455319 101463991 - E130114P18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0066858.1 MGP_C57BL6NJ_G0028889.1 mouse_genomes_project 4 101566740 101676658 - E130114P18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070082.1 MGP_C57BL6NJ_G0029617.1 mouse_genomes_project 4 163868705 163905346 + MGP_C57BL6NJ_P0070082 Cep104 protein_coding protein_coding MGP_C57BL6NJ_T0070083.1 MGP_C57BL6NJ_G0029617.1 mouse_genomes_project 4 163885107 163907273 + MGP_C57BL6NJ_P0070083 Cep104 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070084.1 MGP_C57BL6NJ_G0029617.1 mouse_genomes_project 4 163885846 163886717 + Cep104 protein_coding retained_intron MGP_C57BL6NJ_T0069591.1 MGP_C57BL6NJ_G0029503.1 mouse_genomes_project 4 152189632 152192335 - MGP_C57BL6NJ_P0069591 protein_coding protein_coding MGP_C57BL6NJ_T0065117.1 MGP_C57BL6NJ_G0028458.1 mouse_genomes_project 4 8037436 8057770 - MGP_C57BL6NJ_P0065117 Plekhf2 protein_coding protein_coding MGP_C57BL6NJ_T0065118.1 MGP_C57BL6NJ_G0028458.1 mouse_genomes_project 4 8039523 8058021 - MGP_C57BL6NJ_P0065118 Plekhf2 protein_coding protein_coding MGP_C57BL6NJ_T0069187.1 MGP_C57BL6NJ_G0029398.1 mouse_genomes_project 4 144460777 144464039 - MGP_C57BL6NJ_P0069187 C1qc protein_coding protein_coding MGP_C57BL6NJ_T0069188.1 MGP_C57BL6NJ_G0029398.1 mouse_genomes_project 4 144462624 144463850 - C1qc protein_coding processed_transcript MGP_C57BL6NJ_T0014932.1 MGP_C57BL6NJ_G0012977.1 mouse_genomes_project 4 59486567 59499014 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067632.1 MGP_C57BL6NJ_G0029050.1 mouse_genomes_project 4 122001085 122041143 + MGP_C57BL6NJ_P0067632 Gpbp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0067633.1 MGP_C57BL6NJ_G0029050.1 mouse_genomes_project 4 122001506 122040320 + MGP_C57BL6NJ_P0067633 Gpbp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0067634.1 MGP_C57BL6NJ_G0029050.1 mouse_genomes_project 4 122026078 122028722 + Gpbp1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0067635.1 MGP_C57BL6NJ_G0029050.1 mouse_genomes_project 4 122028632 122036074 + Gpbp1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0015101.1 MGP_C57BL6NJ_G0013146.1 mouse_genomes_project 4 123406805 123407281 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068199.1 MGP_C57BL6NJ_G0029187.1 mouse_genomes_project 4 131513513 131522593 + MGP_C57BL6NJ_P0068199 Snip1 protein_coding protein_coding MGP_C57BL6NJ_T0068200.1 MGP_C57BL6NJ_G0029187.1 mouse_genomes_project 4 131513543 131519852 + Snip1 protein_coding processed_transcript MGP_C57BL6NJ_T0018572.1 MGP_C57BL6NJ_G0015972.1 mouse_genomes_project 4 141253933 141255619 + Gm13061 processed_transcript processed_transcript MGP_C57BL6NJ_T0066889.1 MGP_C57BL6NJ_G0028894.1 mouse_genomes_project 4 102709104 102773525 - MGP_C57BL6NJ_P0066889 Kank4 protein_coding protein_coding MGP_C57BL6NJ_T0066890.1 MGP_C57BL6NJ_G0028894.1 mouse_genomes_project 4 102710515 102725606 - Kank4 protein_coding processed_transcript MGP_C57BL6NJ_T0015222.1 MGP_C57BL6NJ_G0013267.1 mouse_genomes_project 4 162466804 162467060 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067849.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124029451 124035897 + MGP_C57BL6NJ_P0067849 Med8 protein_coding protein_coding MGP_C57BL6NJ_T0067850.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124029467 124035904 + MGP_C57BL6NJ_P0067850 Med8 protein_coding protein_coding MGP_C57BL6NJ_T0067851.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124029469 124035224 + MGP_C57BL6NJ_P0067851 Med8 protein_coding protein_coding MGP_C57BL6NJ_T0067852.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124029470 124033948 + Med8 protein_coding processed_transcript MGP_C57BL6NJ_T0067853.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124030462 124031911 + Med8 protein_coding processed_transcript MGP_C57BL6NJ_T0067854.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124031551 124032638 + Med8 protein_coding processed_transcript MGP_C57BL6NJ_T0067855.1 MGP_C57BL6NJ_G0029089.1 mouse_genomes_project 4 124031742 124034158 + Med8 protein_coding processed_transcript MGP_C57BL6NJ_T0068841.1 MGP_C57BL6NJ_G0029320.1 mouse_genomes_project 4 140653321 140663299 + MGP_C57BL6NJ_P0068841 Kdf1 protein_coding protein_coding MGP_C57BL6NJ_T0068842.1 MGP_C57BL6NJ_G0029320.1 mouse_genomes_project 4 140653350 140666962 + MGP_C57BL6NJ_P0068842 Kdf1 protein_coding protein_coding MGP_C57BL6NJ_T0068843.1 MGP_C57BL6NJ_G0029320.1 mouse_genomes_project 4 140653381 140663022 + MGP_C57BL6NJ_P0068843 Kdf1 protein_coding protein_coding MGP_C57BL6NJ_T0068844.1 MGP_C57BL6NJ_G0029320.1 mouse_genomes_project 4 140653413 140666957 + MGP_C57BL6NJ_P0068844 Kdf1 protein_coding protein_coding MGP_C57BL6NJ_T0068845.1 MGP_C57BL6NJ_G0029320.1 mouse_genomes_project 4 140653441 140666959 + MGP_C57BL6NJ_P0068845 Kdf1 protein_coding protein_coding MGP_C57BL6NJ_T0004774.1 MGP_C57BL6NJ_G0004135.1 mouse_genomes_project 4 165028054 165031432 + Gm10564 antisense antisense MGP_C57BL6NJ_T0018524.1 MGP_C57BL6NJ_G0015945.1 mouse_genomes_project 4 88497312 88786050 + processed_transcript processed_transcript MGP_C57BL6NJ_T0015190.1 MGP_C57BL6NJ_G0013235.1 mouse_genomes_project 4 153163044 153163871 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069821.1 MGP_C57BL6NJ_G0029570.1 mouse_genomes_project 4 158850827 158869443 - MGP_C57BL6NJ_P0069821 Nmnat1 protein_coding protein_coding MGP_C57BL6NJ_T0069822.1 MGP_C57BL6NJ_G0029570.1 mouse_genomes_project 4 158851750 158869439 - MGP_C57BL6NJ_P0069822 Nmnat1 protein_coding protein_coding MGP_C57BL6NJ_T0069823.1 MGP_C57BL6NJ_G0029570.1 mouse_genomes_project 4 158851790 158869413 - MGP_C57BL6NJ_P0069823 Nmnat1 protein_coding protein_coding MGP_C57BL6NJ_T0069824.1 MGP_C57BL6NJ_G0029570.1 mouse_genomes_project 4 158858672 158869404 - MGP_C57BL6NJ_P0069824 Nmnat1 protein_coding protein_coding MGP_C57BL6NJ_T0065364.1 MGP_C57BL6NJ_G0028522.1 mouse_genomes_project 4 31261131 31278875 + Casp8ap2 protein_coding processed_transcript MGP_C57BL6NJ_T0065365.1 MGP_C57BL6NJ_G0028522.1 mouse_genomes_project 4 31261150 31286566 + Casp8ap2 protein_coding processed_transcript MGP_C57BL6NJ_T0065366.1 MGP_C57BL6NJ_G0028522.1 mouse_genomes_project 4 31261153 31300325 + MGP_C57BL6NJ_P0065366 Casp8ap2 protein_coding protein_coding MGP_C57BL6NJ_T0065367.1 MGP_C57BL6NJ_G0028522.1 mouse_genomes_project 4 31261158 31300325 + MGP_C57BL6NJ_P0065367 Casp8ap2 protein_coding protein_coding MGP_C57BL6NJ_T0065368.1 MGP_C57BL6NJ_G0028522.1 mouse_genomes_project 4 31271158 31300325 + MGP_C57BL6NJ_P0065368 Casp8ap2 protein_coding protein_coding MGP_C57BL6NJ_T0010873.1 MGP_C57BL6NJ_G0008958.1 mouse_genomes_project 4 140697409 140697535 - Gm23158 miRNA miRNA MGP_C57BL6NJ_T0066376.1 MGP_C57BL6NJ_G0028767.1 mouse_genomes_project 4 63247169 63281147 - MGP_C57BL6NJ_P0066376 Zfp37 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066377.1 MGP_C57BL6NJ_G0028767.1 mouse_genomes_project 4 63247173 63281232 - MGP_C57BL6NJ_P0066377 Zfp37 protein_coding protein_coding MGP_C57BL6NJ_T0066378.1 MGP_C57BL6NJ_G0028767.1 mouse_genomes_project 4 63250188 63280988 - Zfp37 protein_coding processed_transcript MGP_C57BL6NJ_T0066379.1 MGP_C57BL6NJ_G0028767.1 mouse_genomes_project 4 63250239 63280675 - Zfp37 protein_coding processed_transcript MGP_C57BL6NJ_T0015175.1 MGP_C57BL6NJ_G0013220.1 mouse_genomes_project 4 149143369 149144184 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066058.1 MGP_C57BL6NJ_G0028677.1 mouse_genomes_project 4 46347150 46369813 - MGP_C57BL6NJ_P0066058 Hemgn protein_coding protein_coding MGP_C57BL6NJ_T0066059.1 MGP_C57BL6NJ_G0028677.1 mouse_genomes_project 4 46347150 46357370 - MGP_C57BL6NJ_P0066059 Hemgn protein_coding protein_coding MGP_C57BL6NJ_T0014906.1 MGP_C57BL6NJ_G0012951.1 mouse_genomes_project 4 52806510 52807899 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069610.1 MGP_C57BL6NJ_G0029516.1 mouse_genomes_project 4 152733006 152739600 - MGP_C57BL6NJ_P0069610 Gm13125 protein_coding protein_coding MGP_C57BL6NJ_T0067879.1 MGP_C57BL6NJ_G0029097.1 mouse_genomes_project 4 124255484 124262939 + MGP_C57BL6NJ_P0067879 Ebna1bp2 protein_coding protein_coding MGP_C57BL6NJ_T0067880.1 MGP_C57BL6NJ_G0029097.1 mouse_genomes_project 4 124255533 124256617 + Ebna1bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0067881.1 MGP_C57BL6NJ_G0029097.1 mouse_genomes_project 4 124255535 124256348 + Ebna1bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0067882.1 MGP_C57BL6NJ_G0029097.1 mouse_genomes_project 4 124255845 124259355 + MGP_C57BL6NJ_P0067882 Ebna1bp2 protein_coding protein_coding MGP_C57BL6NJ_T0067883.1 MGP_C57BL6NJ_G0029097.1 mouse_genomes_project 4 124255911 124260781 + Ebna1bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0068983.1 MGP_C57BL6NJ_G0029351.1 mouse_genomes_project 4 141761692 141767219 + MGP_C57BL6NJ_P0068983 Stmn1 protein_coding protein_coding MGP_C57BL6NJ_T0068984.1 MGP_C57BL6NJ_G0029351.1 mouse_genomes_project 4 141761771 141764056 + Stmn1 protein_coding processed_transcript MGP_C57BL6NJ_T0068985.1 MGP_C57BL6NJ_G0029351.1 mouse_genomes_project 4 141761778 141766298 + MGP_C57BL6NJ_P0068985 Stmn1 protein_coding protein_coding MGP_C57BL6NJ_T0068986.1 MGP_C57BL6NJ_G0029351.1 mouse_genomes_project 4 141761781 141767037 + MGP_C57BL6NJ_P0068986 Stmn1 protein_coding protein_coding MGP_C57BL6NJ_T0068987.1 MGP_C57BL6NJ_G0029351.1 mouse_genomes_project 4 141763114 141766872 + MGP_C57BL6NJ_P0068987 Stmn1 protein_coding protein_coding MGP_C57BL6NJ_T0065199.1 MGP_C57BL6NJ_G0028477.1 mouse_genomes_project 4 10078215 10151472 + MGP_C57BL6NJ_P0065199 Triqk protein_coding protein_coding MGP_C57BL6NJ_T0065200.1 MGP_C57BL6NJ_G0028477.1 mouse_genomes_project 4 10078235 10154092 + MGP_C57BL6NJ_P0065200 Triqk protein_coding protein_coding MGP_C57BL6NJ_T0065201.1 MGP_C57BL6NJ_G0028477.1 mouse_genomes_project 4 10089344 10151669 + Triqk protein_coding processed_transcript MGP_C57BL6NJ_T0067388.1 MGP_C57BL6NJ_G0028993.1 mouse_genomes_project 4 114186849 114213144 - MGP_C57BL6NJ_P0067388 Rnf11 protein_coding protein_coding MGP_C57BL6NJ_T0067389.1 MGP_C57BL6NJ_G0028993.1 mouse_genomes_project 4 114188650 114213452 - MGP_C57BL6NJ_P0067389 Rnf11 protein_coding protein_coding MGP_C57BL6NJ_T0067390.1 MGP_C57BL6NJ_G0028993.1 mouse_genomes_project 4 114190035 114221197 - MGP_C57BL6NJ_P0067390 Rnf11 protein_coding protein_coding MGP_C57BL6NJ_T0008109.1 MGP_C57BL6NJ_G0006628.1 mouse_genomes_project 4 124710860 124732625 - lincRNA lincRNA MGP_C57BL6NJ_T0069135.1 MGP_C57BL6NJ_G0029385.1 mouse_genomes_project 4 143622592 143646190 + MGP_C57BL6NJ_P0069135 E2f2 protein_coding protein_coding MGP_C57BL6NJ_T0069136.1 MGP_C57BL6NJ_G0029385.1 mouse_genomes_project 4 143630981 143636949 + E2f2 protein_coding processed_transcript MGP_C57BL6NJ_T0004708.1 MGP_C57BL6NJ_G0004083.1 mouse_genomes_project 4 139563619 139564534 + Gm12999 antisense antisense MGP_C57BL6NJ_T0066359.1 MGP_C57BL6NJ_G0028759.1 mouse_genomes_project 4 60576871 60722370 + MGP_C57BL6NJ_P0066359 E130308A19Rik protein_coding protein_coding MGP_C57BL6NJ_T0066360.1 MGP_C57BL6NJ_G0028759.1 mouse_genomes_project 4 60576903 60680288 + MGP_C57BL6NJ_P0066360 E130308A19Rik protein_coding protein_coding MGP_C57BL6NJ_T0066361.1 MGP_C57BL6NJ_G0028759.1 mouse_genomes_project 4 60648255 60679130 + E130308A19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0069477.1 MGP_C57BL6NJ_G0029467.1 mouse_genomes_project 4 149382804 149410824 + MGP_C57BL6NJ_P0069477 Epha2 protein_coding protein_coding MGP_C57BL6NJ_T0069478.1 MGP_C57BL6NJ_G0029467.1 mouse_genomes_project 4 149383971 149390295 + Epha2 protein_coding processed_transcript MGP_C57BL6NJ_T0069479.1 MGP_C57BL6NJ_G0029467.1 mouse_genomes_project 4 149390454 149392519 + Epha2 protein_coding processed_transcript MGP_C57BL6NJ_T0069480.1 MGP_C57BL6NJ_G0029467.1 mouse_genomes_project 4 149398489 149402339 + Epha2 protein_coding processed_transcript MGP_C57BL6NJ_T0067937.1 MGP_C57BL6NJ_G0029118.1 mouse_genomes_project 4 125009588 125014030 + MGP_C57BL6NJ_P0067937 Cldn19 protein_coding protein_coding MGP_C57BL6NJ_T0067938.1 MGP_C57BL6NJ_G0029118.1 mouse_genomes_project 4 125009683 125016614 + MGP_C57BL6NJ_P0067938 Cldn19 protein_coding protein_coding MGP_C57BL6NJ_T0069588.1 MGP_C57BL6NJ_G0029500.1 mouse_genomes_project 4 151989746 151993337 + MGP_C57BL6NJ_P0069588 Gm13078 protein_coding protein_coding MGP_C57BL6NJ_T0069122.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143443279 143443813 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069123.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143443279 143482721 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069124.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143479766 143483429 - MGP_C57BL6NJ_P0069124 Rpl11 protein_coding protein_coding MGP_C57BL6NJ_T0069125.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143479982 143480562 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069126.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143480025 143483032 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069127.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143480315 143483126 - MGP_C57BL6NJ_P0069127 Rpl11 protein_coding protein_coding MGP_C57BL6NJ_T0069128.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143480367 143482790 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069129.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143480668 143482742 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069130.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143481063 143482752 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0069131.1 MGP_C57BL6NJ_G0029383.1 mouse_genomes_project 4 143481276 143483464 - Rpl11 protein_coding processed_transcript MGP_C57BL6NJ_T0014938.1 MGP_C57BL6NJ_G0012983.1 mouse_genomes_project 4 64073490 64073745 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004680.1 MGP_C57BL6NJ_G0004061.1 mouse_genomes_project 4 124681272 124681918 - Gm12863 antisense antisense MGP_C57BL6NJ_T0015047.1 MGP_C57BL6NJ_G0013092.1 mouse_genomes_project 4 107894201 107895555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065556.1 MGP_C57BL6NJ_G0028570.1 mouse_genomes_project 4 40743461 40792918 + MGP_C57BL6NJ_P0065556 Ubap1 protein_coding protein_coding MGP_C57BL6NJ_T0065557.1 MGP_C57BL6NJ_G0028570.1 mouse_genomes_project 4 40743461 40792159 + MGP_C57BL6NJ_P0065557 Ubap1 protein_coding protein_coding MGP_C57BL6NJ_T0065558.1 MGP_C57BL6NJ_G0028570.1 mouse_genomes_project 4 40743513 40772349 + Ubap1 protein_coding processed_transcript MGP_C57BL6NJ_T0065559.1 MGP_C57BL6NJ_G0028570.1 mouse_genomes_project 4 40772311 40780391 + Ubap1 protein_coding processed_transcript MGP_C57BL6NJ_T0065560.1 MGP_C57BL6NJ_G0028570.1 mouse_genomes_project 4 40772788 40791085 + MGP_C57BL6NJ_P0065560 Ubap1 protein_coding protein_coding MGP_C57BL6NJ_T0065172.1 MGP_C57BL6NJ_G0028470.1 mouse_genomes_project 4 8860264 8922039 + MGP_C57BL6NJ_P0065172 Cdh17 protein_coding protein_coding MGP_C57BL6NJ_T0065173.1 MGP_C57BL6NJ_G0028470.1 mouse_genomes_project 4 8860310 8915458 + MGP_C57BL6NJ_P0065173 Cdh17 protein_coding protein_coding MGP_C57BL6NJ_T0004663.1 MGP_C57BL6NJ_G0004047.1 mouse_genomes_project 4 113637363 113677784 - 8030443G20Rik antisense antisense MGP_C57BL6NJ_T0066915.1 MGP_C57BL6NJ_G0028898.1 mouse_genomes_project 4 103011923 103019035 + MGP_C57BL6NJ_P0066915 Angptl3 protein_coding protein_coding MGP_C57BL6NJ_T0066916.1 MGP_C57BL6NJ_G0028898.1 mouse_genomes_project 4 103014148 103018929 + Angptl3 protein_coding processed_transcript MGP_C57BL6NJ_T0066917.1 MGP_C57BL6NJ_G0028898.1 mouse_genomes_project 4 103014172 103027081 + Angptl3 protein_coding processed_transcript MGP_C57BL6NJ_T0065950.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44580562 44586644 + MGP_C57BL6NJ_P0065950 Zcchc7 protein_coding protein_coding MGP_C57BL6NJ_T0065951.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44581253 44772954 + MGP_C57BL6NJ_P0065951 Zcchc7 protein_coding protein_coding MGP_C57BL6NJ_T0065952.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44581273 44748118 + Zcchc7 protein_coding retained_intron MGP_C57BL6NJ_T0065953.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44581324 44586901 + MGP_C57BL6NJ_P0065953 Zcchc7 protein_coding protein_coding MGP_C57BL6NJ_T0065954.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44581332 44745972 + MGP_C57BL6NJ_P0065954 Zcchc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065955.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44585116 44749180 + Zcchc7 protein_coding retained_intron MGP_C57BL6NJ_T0065956.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44743357 44772113 + Zcchc7 protein_coding processed_transcript MGP_C57BL6NJ_T0065957.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44762572 44772966 + MGP_C57BL6NJ_P0065957 Zcchc7 protein_coding protein_coding MGP_C57BL6NJ_T0065958.1 MGP_C57BL6NJ_G0028654.1 mouse_genomes_project 4 44765447 44772113 + MGP_C57BL6NJ_P0065958 Zcchc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103163.1 MGP_C57BL6NJ_G0040957.1 mouse_genomes_project 4 127318981 127324273 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067391.1 MGP_C57BL6NJ_G0028994.1 mouse_genomes_project 4 114241818 114268253 - MGP_C57BL6NJ_P0067391 4930522H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0067392.1 MGP_C57BL6NJ_G0028994.1 mouse_genomes_project 4 114241846 114268160 - MGP_C57BL6NJ_P0067392 4930522H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0066243.1 MGP_C57BL6NJ_G0028732.1 mouse_genomes_project 4 57549198 57551479 + Fam206a protein_coding retained_intron MGP_C57BL6NJ_T0066244.1 MGP_C57BL6NJ_G0028732.1 mouse_genomes_project 4 57549202 57556455 + MGP_C57BL6NJ_P0066244 Fam206a protein_coding protein_coding MGP_C57BL6NJ_T0066245.1 MGP_C57BL6NJ_G0028732.1 mouse_genomes_project 4 57549205 57556455 + MGP_C57BL6NJ_P0066245 Fam206a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066246.1 MGP_C57BL6NJ_G0028732.1 mouse_genomes_project 4 57549471 57552801 + MGP_C57BL6NJ_P0066246 Fam206a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008176.1 MGP_C57BL6NJ_G0006670.1 mouse_genomes_project 4 144691435 144692436 - Gm13001 lincRNA lincRNA MGP_C57BL6NJ_T0004728.1 MGP_C57BL6NJ_G0004100.1 mouse_genomes_project 4 149178215 149180643 + 4921514A10Rik antisense antisense MGP_C57BL6NJ_T0068350.1 MGP_C57BL6NJ_G0029219.1 mouse_genomes_project 4 133896117 133900129 + MGP_C57BL6NJ_P0068350 Smim12 protein_coding protein_coding MGP_C57BL6NJ_T0014742.1 MGP_C57BL6NJ_G0012787.1 mouse_genomes_project 4 3292454 3293200 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007981.1 MGP_C57BL6NJ_G0006521.1 mouse_genomes_project 4 9421178 9476053 + Gm11846 lincRNA lincRNA MGP_C57BL6NJ_T0018533.1 MGP_C57BL6NJ_G0015952.1 mouse_genomes_project 4 99209932 99213376 + Gm12707 processed_transcript processed_transcript MGP_C57BL6NJ_T0069466.1 MGP_C57BL6NJ_G0029465.1 mouse_genomes_project 4 149286441 149292634 + MGP_C57BL6NJ_P0069466 Rsg1 protein_coding protein_coding MGP_C57BL6NJ_T0069467.1 MGP_C57BL6NJ_G0029465.1 mouse_genomes_project 4 149286930 149291160 + Rsg1 protein_coding processed_transcript MGP_C57BL6NJ_T0069468.1 MGP_C57BL6NJ_G0029465.1 mouse_genomes_project 4 149291131 149299182 + Rsg1 protein_coding processed_transcript MGP_C57BL6NJ_T0100381.1 MGP_C57BL6NJ_G0038427.1 mouse_genomes_project 4 122136585 122136695 + Gm25137 snRNA snRNA MGP_C57BL6NJ_T0100390.1 MGP_C57BL6NJ_G0038436.1 mouse_genomes_project 4 130700494 130700598 - Gm22983 snRNA snRNA MGP_C57BL6NJ_T0015170.1 MGP_C57BL6NJ_G0013215.1 mouse_genomes_project 4 144792851 144793459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010806.1 MGP_C57BL6NJ_G0008891.1 mouse_genomes_project 4 86603 86705 + Mir3471-2 miRNA miRNA MGP_C57BL6NJ_T0100375.1 MGP_C57BL6NJ_G0038421.1 mouse_genomes_project 4 113161774 113161877 + Gm23138 snRNA snRNA MGP_C57BL6NJ_T0066951.1 MGP_C57BL6NJ_G0028910.1 mouse_genomes_project 4 105185993 105275421 + MGP_C57BL6NJ_P0066951 Raver2 protein_coding protein_coding MGP_C57BL6NJ_T0066952.1 MGP_C57BL6NJ_G0028910.1 mouse_genomes_project 4 105185993 105258407 + MGP_C57BL6NJ_P0066952 Raver2 protein_coding protein_coding MGP_C57BL6NJ_T0066953.1 MGP_C57BL6NJ_G0028910.1 mouse_genomes_project 4 105186489 105224550 + Raver2 protein_coding processed_transcript MGP_C57BL6NJ_T0008180.1 MGP_C57BL6NJ_G0006674.1 mouse_genomes_project 4 147243602 147248654 - 2700016F22Rik lincRNA lincRNA MGP_C57BL6NJ_T0067691.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122482369 122486790 - MGP_C57BL6NJ_P0067691 Urod protein_coding protein_coding MGP_C57BL6NJ_T0067692.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122482593 122484042 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067693.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122482661 122484263 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067694.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122483452 122486741 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067695.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122483837 122486734 - MGP_C57BL6NJ_P0067695 Urod protein_coding protein_coding MGP_C57BL6NJ_T0067696.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122484660 122486723 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067697.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122485160 122486722 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067698.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122485329 122485974 - Urod protein_coding processed_transcript MGP_C57BL6NJ_T0067699.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122485484 122486717 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0067700.1 MGP_C57BL6NJ_G0029062.1 mouse_genomes_project 4 122485656 122486757 - Urod protein_coding retained_intron MGP_C57BL6NJ_T0069499.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149554518 149626819 - MGP_C57BL6NJ_P0069499 Spen protein_coding protein_coding MGP_C57BL6NJ_T0069500.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149554518 149626967 - MGP_C57BL6NJ_P0069500 Spen protein_coding protein_coding MGP_C57BL6NJ_T0069501.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149555092 149558122 - Spen protein_coding processed_transcript MGP_C57BL6NJ_T0069502.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149571133 149574853 - Spen protein_coding processed_transcript MGP_C57BL6NJ_T0069503.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149581861 149605181 - Spen protein_coding processed_transcript MGP_C57BL6NJ_T0069504.1 MGP_C57BL6NJ_G0029474.1 mouse_genomes_project 4 149610026 149626623 - Spen protein_coding processed_transcript MGP_C57BL6NJ_T0067288.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113122408 113143381 + MGP_C57BL6NJ_P0067288 Zcchc11 protein_coding protein_coding MGP_C57BL6NJ_T0067289.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113122408 113227624 + MGP_C57BL6NJ_P0067289 Zcchc11 protein_coding protein_coding MGP_C57BL6NJ_T0067290.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113122992 113227630 + MGP_C57BL6NJ_P0067290 Zcchc11 protein_coding protein_coding MGP_C57BL6NJ_T0067291.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113143308 113192408 + MGP_C57BL6NJ_P0067291 Zcchc11 protein_coding protein_coding MGP_C57BL6NJ_T0067292.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113194530 113197363 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067293.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113210647 113216674 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067294.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113210746 113211615 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067295.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113210799 113211608 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067296.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113217472 113223681 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067297.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113223697 113227624 + Zcchc11 protein_coding processed_transcript MGP_C57BL6NJ_T0067298.1 MGP_C57BL6NJ_G0028977.1 mouse_genomes_project 4 113223981 113227263 + MGP_C57BL6NJ_P0067298 Zcchc11 protein_coding protein_coding MGP_C57BL6NJ_T0067325.1 MGP_C57BL6NJ_G0028984.1 mouse_genomes_project 4 113516492 113548301 + MGP_C57BL6NJ_P0067325 Txndc12 protein_coding protein_coding MGP_C57BL6NJ_T0067326.1 MGP_C57BL6NJ_G0028984.1 mouse_genomes_project 4 113516526 113528382 + Txndc12 protein_coding processed_transcript MGP_C57BL6NJ_T0067329.1 MGP_C57BL6NJ_G0028984.1 mouse_genomes_project 4 113543664 113545455 + Txndc12 protein_coding processed_transcript MGP_C57BL6NJ_T0100333.1 MGP_C57BL6NJ_G0038379.1 mouse_genomes_project 4 15082416 15082519 - Gm23384 snRNA snRNA MGP_C57BL6NJ_T0065571.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40917107 - 1110017D15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065572.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40917097 - 1110017D15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065573.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40917102 - 1110017D15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065574.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40920810 - MGP_C57BL6NJ_P0065574 1110017D15Rik protein_coding protein_coding MGP_C57BL6NJ_T0065575.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40928232 - MGP_C57BL6NJ_P0065575 1110017D15Rik protein_coding protein_coding MGP_C57BL6NJ_T0065576.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40914351 40928232 - MGP_C57BL6NJ_P0065576 1110017D15Rik protein_coding protein_coding MGP_C57BL6NJ_T0065577.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40916467 40928227 - 1110017D15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065578.1 MGP_C57BL6NJ_G0028574.1 mouse_genomes_project 4 40917876 40918307 - 1110017D15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0004599.1 MGP_C57BL6NJ_G0004001.1 mouse_genomes_project 4 41243591 41244418 + antisense antisense MGP_C57BL6NJ_T0015121.1 MGP_C57BL6NJ_G0013166.1 mouse_genomes_project 4 127576795 127577127 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065069.1 MGP_C57BL6NJ_G0028450.1 mouse_genomes_project 4 3464564 3788169 - MGP_C57BL6NJ_P0065069 Tox protein_coding protein_coding MGP_C57BL6NJ_T0065070.1 MGP_C57BL6NJ_G0028450.1 mouse_genomes_project 4 3468937 3470243 - Tox protein_coding processed_transcript MGP_C57BL6NJ_T0065071.1 MGP_C57BL6NJ_G0028450.1 mouse_genomes_project 4 3526645 3788927 - Tox protein_coding retained_intron MGP_C57BL6NJ_T0065072.1 MGP_C57BL6NJ_G0028450.1 mouse_genomes_project 4 3614368 3787854 - Tox protein_coding retained_intron MGP_C57BL6NJ_T0018499.1 MGP_C57BL6NJ_G0015929.1 mouse_genomes_project 4 23008742 23014569 - C230012O17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018500.1 MGP_C57BL6NJ_G0015929.1 mouse_genomes_project 4 23010282 23015036 - C230012O17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018501.1 MGP_C57BL6NJ_G0015929.1 mouse_genomes_project 4 23014324 23015402 - C230012O17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0067877.1 MGP_C57BL6NJ_G0029096.1 mouse_genomes_project 4 124180020 124255463 - MGP_C57BL6NJ_P0067877 Cfap57 protein_coding protein_coding MGP_C57BL6NJ_T0067878.1 MGP_C57BL6NJ_G0029096.1 mouse_genomes_project 4 124180165 124255102 - MGP_C57BL6NJ_P0067878 Cfap57 protein_coding protein_coding MGP_C57BL6NJ_T0069464.1 MGP_C57BL6NJ_G0029464.1 mouse_genomes_project 4 149217611 149278095 + MGP_C57BL6NJ_P0069464 Fbxo42 protein_coding protein_coding MGP_C57BL6NJ_T0069465.1 MGP_C57BL6NJ_G0029464.1 mouse_genomes_project 4 149217620 149269311 + Fbxo42 protein_coding processed_transcript MGP_C57BL6NJ_T0067072.1 MGP_C57BL6NJ_G0028934.1 mouse_genomes_project 4 109268117 109272253 + MGP_C57BL6NJ_P0067072 Gm17662 protein_coding protein_coding MGP_C57BL6NJ_T0067649.1 MGP_C57BL6NJ_G0029053.1 mouse_genomes_project 4 122085478 122113544 - MGP_C57BL6NJ_P0067649 Akr1a1 protein_coding protein_coding MGP_C57BL6NJ_T0067650.1 MGP_C57BL6NJ_G0029053.1 mouse_genomes_project 4 122085479 122113260 - Akr1a1 protein_coding processed_transcript MGP_C57BL6NJ_T0067651.1 MGP_C57BL6NJ_G0029053.1 mouse_genomes_project 4 122085479 122086978 - Akr1a1 protein_coding processed_transcript MGP_C57BL6NJ_T0001544.1 MGP_C57BL6NJ_G0001444.1 mouse_genomes_project 4 13817987 13818593 + TEC TEC MGP_C57BL6NJ_T0068973.1 MGP_C57BL6NJ_G0029349.1 mouse_genomes_project 4 141641892 141659797 - MGP_C57BL6NJ_P0068973 Extl1 protein_coding protein_coding MGP_C57BL6NJ_T0068974.1 MGP_C57BL6NJ_G0029349.1 mouse_genomes_project 4 141647786 141670226 - Extl1 protein_coding processed_transcript MGP_C57BL6NJ_T0068975.1 MGP_C57BL6NJ_G0029349.1 mouse_genomes_project 4 141649943 141652663 - Extl1 protein_coding processed_transcript MGP_C57BL6NJ_T0010850.1 MGP_C57BL6NJ_G0008935.1 mouse_genomes_project 4 105482933 105483016 - Mir101a miRNA miRNA MGP_C57BL6NJ_T0069872.1 MGP_C57BL6NJ_G0029580.1 mouse_genomes_project 4 159595383 159622890 + MGP_C57BL6NJ_P0069872 Slc2a5 protein_coding protein_coding MGP_C57BL6NJ_T0069873.1 MGP_C57BL6NJ_G0029580.1 mouse_genomes_project 4 159605543 159618760 + Slc2a5 protein_coding processed_transcript MGP_C57BL6NJ_T0069874.1 MGP_C57BL6NJ_G0029580.1 mouse_genomes_project 4 159618072 159620974 + Slc2a5 protein_coding retained_intron MGP_C57BL6NJ_T0069875.1 MGP_C57BL6NJ_G0029580.1 mouse_genomes_project 4 159618273 159621559 + Slc2a5 protein_coding processed_transcript MGP_C57BL6NJ_T0068110.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607214 129972934 - MGP_C57BL6NJ_P0068110 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068111.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607214 129630199 - MGP_C57BL6NJ_P0068111 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068112.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129625614 - MGP_C57BL6NJ_P0068112 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068113.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129770206 - MGP_C57BL6NJ_P0068113 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068114.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129632635 - MGP_C57BL6NJ_P0068114 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068115.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129819415 - MGP_C57BL6NJ_P0068115 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068116.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129745680 - MGP_C57BL6NJ_P0068116 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068117.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607297 129972934 - MGP_C57BL6NJ_P0068117 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068118.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607299 129798114 - MGP_C57BL6NJ_P0068118 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068119.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607299 129972934 - MGP_C57BL6NJ_P0068119 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068120.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129607301 129972934 - MGP_C57BL6NJ_P0068120 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068121.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129646172 129653582 - MGP_C57BL6NJ_P0068121 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068122.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129662052 129672293 - Macf1 protein_coding processed_transcript MGP_C57BL6NJ_T0068123.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129725995 129798255 - MGP_C57BL6NJ_P0068123 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068124.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129725995 129952134 - MGP_C57BL6NJ_P0068124 Macf1 protein_coding protein_coding MGP_C57BL6NJ_T0068125.1 MGP_C57BL6NJ_G0029164.1 mouse_genomes_project 4 129812202 129841529 - Macf1 protein_coding processed_transcript MGP_C57BL6NJ_T0068184.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131350289 131367830 - MGP_C57BL6NJ_P0068184 Cdca8 protein_coding protein_coding MGP_C57BL6NJ_T0068185.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131350935 131367786 - MGP_C57BL6NJ_P0068185 Cdca8 protein_coding protein_coding MGP_C57BL6NJ_T0068186.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131351380 131367320 - Cdca8 protein_coding processed_transcript MGP_C57BL6NJ_T0068187.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131355448 131367694 - Cdca8 protein_coding processed_transcript MGP_C57BL6NJ_T0068188.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131355628 131367755 - Cdca8 protein_coding retained_intron MGP_C57BL6NJ_T0068189.1 MGP_C57BL6NJ_G0029183.1 mouse_genomes_project 4 131358546 131370224 - MGP_C57BL6NJ_P0068189 Cdca8 protein_coding protein_coding MGP_C57BL6NJ_T0067276.1 MGP_C57BL6NJ_G0028972.1 mouse_genomes_project 4 112813571 112850165 - MGP_C57BL6NJ_P0067276 Zyg11a protein_coding protein_coding MGP_C57BL6NJ_T0067277.1 MGP_C57BL6NJ_G0028972.1 mouse_genomes_project 4 112813571 112850140 - MGP_C57BL6NJ_P0067277 Zyg11a protein_coding protein_coding MGP_C57BL6NJ_T0069585.1 MGP_C57BL6NJ_G0029497.1 mouse_genomes_project 4 151926072 151928189 - MGP_C57BL6NJ_P0069585 protein_coding protein_coding MGP_C57BL6NJ_T0066655.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88184984 88386711 + MGP_C57BL6NJ_P0066655 Sh3gl2 protein_coding protein_coding MGP_C57BL6NJ_T0066656.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88185299 88376562 + MGP_C57BL6NJ_P0066656 Sh3gl2 protein_coding protein_coding MGP_C57BL6NJ_T0066657.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88185327 88626567 + MGP_C57BL6NJ_P0066657 Sh3gl2 protein_coding protein_coding MGP_C57BL6NJ_T0066658.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88185393 88364873 + MGP_C57BL6NJ_P0066658 Sh3gl2 protein_coding protein_coding MGP_C57BL6NJ_T0066659.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88317804 88376567 + MGP_C57BL6NJ_P0066659 Sh3gl2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066660.1 MGP_C57BL6NJ_G0028828.1 mouse_genomes_project 4 88363522 88374782 + MGP_C57BL6NJ_P0066660 Sh3gl2 protein_coding protein_coding MGP_C57BL6NJ_T0065215.1 MGP_C57BL6NJ_G0028481.1 mouse_genomes_project 4 12184300 12235253 + MGP_C57BL6NJ_P0065215 Tmem55a protein_coding protein_coding MGP_C57BL6NJ_T0066741.1 MGP_C57BL6NJ_G0028850.1 mouse_genomes_project 4 91997205 91998243 + MGP_C57BL6NJ_P0066741 Gm26566 protein_coding protein_coding MGP_C57BL6NJ_T0070373.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166044444 166061418 + MGP_C57BL6NJ_P0070373 Sdf4 protein_coding protein_coding MGP_C57BL6NJ_T0070374.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166044483 166064826 + MGP_C57BL6NJ_P0070374 Sdf4 protein_coding protein_coding MGP_C57BL6NJ_T0070375.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166044742 166053983 + MGP_C57BL6NJ_P0070375 Sdf4 protein_coding protein_coding MGP_C57BL6NJ_T0070376.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166044949 166061526 + MGP_C57BL6NJ_P0070376 Sdf4 protein_coding protein_coding MGP_C57BL6NJ_T0070377.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166050965 166052503 + Sdf4 protein_coding retained_intron MGP_C57BL6NJ_T0070378.1 MGP_C57BL6NJ_G0029672.1 mouse_genomes_project 4 166059717 166061065 + Sdf4 protein_coding retained_intron MGP_C57BL6NJ_T0068054.1 MGP_C57BL6NJ_G0029145.1 mouse_genomes_project 4 127019319 127022895 - MGP_C57BL6NJ_P0068054 Tmco2 protein_coding protein_coding MGP_C57BL6NJ_T0101717.1 MGP_C57BL6NJ_G0039763.1 mouse_genomes_project 4 141412890 141412978 - Gm27619 snoRNA snoRNA MGP_C57BL6NJ_T0018511.1 MGP_C57BL6NJ_G0015936.1 mouse_genomes_project 4 43842240 43863232 + Gm12503 processed_transcript processed_transcript MGP_C57BL6NJ_T0070206.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250465 165257083 + Faap20 protein_coding processed_transcript MGP_C57BL6NJ_T0070207.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250524 165251616 + Faap20 protein_coding processed_transcript MGP_C57BL6NJ_T0070208.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250540 165251474 + Faap20 protein_coding processed_transcript MGP_C57BL6NJ_T0070209.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250560 165257127 + Faap20 protein_coding processed_transcript MGP_C57BL6NJ_T0070210.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250629 165257351 + MGP_C57BL6NJ_P0070210 Faap20 protein_coding protein_coding MGP_C57BL6NJ_T0070211.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250629 165257347 + MGP_C57BL6NJ_P0070211 Faap20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070212.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250652 165257047 + MGP_C57BL6NJ_P0070212 Faap20 protein_coding protein_coding MGP_C57BL6NJ_T0070213.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250666 165257348 + MGP_C57BL6NJ_P0070213 Faap20 protein_coding protein_coding MGP_C57BL6NJ_T0070214.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165250995 165257082 + MGP_C57BL6NJ_P0070214 Faap20 protein_coding protein_coding MGP_C57BL6NJ_T0070215.1 MGP_C57BL6NJ_G0029640.1 mouse_genomes_project 4 165251359 165257112 + Faap20 protein_coding retained_intron MGP_C57BL6NJ_T0103175.1 MGP_C57BL6NJ_G0040969.1 mouse_genomes_project 4 152176245 152178805 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0068629.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479112 137614833 + MGP_C57BL6NJ_P0068629 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0068630.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479150 137614831 + MGP_C57BL6NJ_P0068630 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0068631.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479150 137614831 + MGP_C57BL6NJ_P0068631 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0068632.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479157 137542913 + Pum1 protein_coding retained_intron MGP_C57BL6NJ_T0068633.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479158 137571019 + MGP_C57BL6NJ_P0068633 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0068634.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479177 137610805 + MGP_C57BL6NJ_P0068634 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0068635.1 MGP_C57BL6NJ_G0029277.1 mouse_genomes_project 4 137479197 137610793 + MGP_C57BL6NJ_P0068635 Pum1 protein_coding protein_coding MGP_C57BL6NJ_T0014843.1 MGP_C57BL6NJ_G0012888.1 mouse_genomes_project 4 31686677 31687004 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067525.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100052 121137200 + MGP_C57BL6NJ_P0067525 Efcab14 protein_coding protein_coding MGP_C57BL6NJ_T0067526.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100087 121120615 + Efcab14 protein_coding processed_transcript MGP_C57BL6NJ_T0067527.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100087 121131860 + MGP_C57BL6NJ_P0067527 Efcab14 protein_coding protein_coding MGP_C57BL6NJ_T0067528.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100088 121116252 + Efcab14 protein_coding processed_transcript MGP_C57BL6NJ_T0067529.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100381 121140090 + MGP_C57BL6NJ_P0067529 Efcab14 protein_coding protein_coding MGP_C57BL6NJ_T0067530.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121100751 121136843 + MGP_C57BL6NJ_P0067530 Efcab14 protein_coding protein_coding MGP_C57BL6NJ_T0067531.1 MGP_C57BL6NJ_G0029029.1 mouse_genomes_project 4 121129236 121137953 + Efcab14 protein_coding processed_transcript MGP_C57BL6NJ_T0015043.1 MGP_C57BL6NJ_G0013088.1 mouse_genomes_project 4 105476923 105477215 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014810.1 MGP_C57BL6NJ_G0012855.1 mouse_genomes_project 4 23515570 23515898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068098.1 MGP_C57BL6NJ_G0029161.1 mouse_genomes_project 4 129476987 129493288 + MGP_C57BL6NJ_P0068098 Heyl protein_coding protein_coding MGP_C57BL6NJ_T0068099.1 MGP_C57BL6NJ_G0029161.1 mouse_genomes_project 4 129477284 129484091 + Heyl protein_coding processed_transcript MGP_C57BL6NJ_T0068100.1 MGP_C57BL6NJ_G0029161.1 mouse_genomes_project 4 129483188 129489402 + Heyl protein_coding processed_transcript MGP_C57BL6NJ_T0015122.1 MGP_C57BL6NJ_G0013167.1 mouse_genomes_project 4 127965327 127966473 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099453.1 MGP_C57BL6NJ_G0037510.1 mouse_genomes_project 4 161911365 161911855 + Gm13096 sense_intronic sense_intronic MGP_C57BL6NJ_T0068709.1 MGP_C57BL6NJ_G0029291.1 mouse_genomes_project 4 139293914 139295103 - MGP_C57BL6NJ_P0068709 Rab42 protein_coding protein_coding MGP_C57BL6NJ_T0068357.1 MGP_C57BL6NJ_G0029224.1 mouse_genomes_project 4 134644772 134689744 - MGP_C57BL6NJ_P0068357 CK137956 protein_coding protein_coding MGP_C57BL6NJ_T0070341.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165916947 165939019 + Cpsf3l protein_coding processed_transcript MGP_C57BL6NJ_T0070342.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165916947 165939423 + MGP_C57BL6NJ_P0070342 Cpsf3l protein_coding protein_coding MGP_C57BL6NJ_T0070343.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165916947 165939005 + MGP_C57BL6NJ_P0070343 Cpsf3l protein_coding protein_coding MGP_C57BL6NJ_T0070344.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165916968 165919714 + Cpsf3l protein_coding retained_intron MGP_C57BL6NJ_T0070345.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165917016 165937239 + MGP_C57BL6NJ_P0070345 Cpsf3l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070346.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165938098 165938807 + Cpsf3l protein_coding retained_intron MGP_C57BL6NJ_T0070348.1 MGP_C57BL6NJ_G0029666.1 mouse_genomes_project 4 165938442 165939053 + Cpsf3l protein_coding retained_intron MGP_C57BL6NJ_T0065471.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34595965 34760017 - MGP_C57BL6NJ_P0065471 Lingo2 protein_coding protein_coding MGP_C57BL6NJ_T0065472.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34596724 35997038 - MGP_C57BL6NJ_P0065472 Lingo2 protein_coding protein_coding MGP_C57BL6NJ_T0065473.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34596724 35081412 - MGP_C57BL6NJ_P0065473 Lingo2 protein_coding protein_coding MGP_C57BL6NJ_T0065474.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34596724 34760017 - MGP_C57BL6NJ_P0065474 Lingo2 protein_coding protein_coding MGP_C57BL6NJ_T0065475.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34597161 34978444 - MGP_C57BL6NJ_P0065475 Lingo2 protein_coding protein_coding MGP_C57BL6NJ_T0065476.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 34978441 35996301 - Lingo2 protein_coding processed_transcript MGP_C57BL6NJ_T0065477.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 35745353 35997559 - Lingo2 protein_coding processed_transcript MGP_C57BL6NJ_T0065478.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 35748090 35996282 - Lingo2 protein_coding processed_transcript MGP_C57BL6NJ_T0065479.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 35748335 35996304 - Lingo2 protein_coding processed_transcript MGP_C57BL6NJ_T0065480.1 MGP_C57BL6NJ_G0028549.1 mouse_genomes_project 4 35996914 35997562 - Lingo2 protein_coding processed_transcript MGP_C57BL6NJ_T0014953.1 MGP_C57BL6NJ_G0012998.1 mouse_genomes_project 4 72754465 72754936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101638.1 MGP_C57BL6NJ_G0039684.1 mouse_genomes_project 4 4648460 4648592 + Gm23860 snoRNA snoRNA MGP_C57BL6NJ_T0100370.1 MGP_C57BL6NJ_G0038416.1 mouse_genomes_project 4 105224331 105224394 - Gm22100 snRNA snRNA MGP_C57BL6NJ_T0069917.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160506328 161531496 - MGP_C57BL6NJ_P0069917 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069935.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160664728 161531703 - MGP_C57BL6NJ_P0069935 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069936.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160664729 161531573 - MGP_C57BL6NJ_P0069936 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069937.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160664729 160684997 - MGP_C57BL6NJ_P0069937 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069938.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160665017 160713776 - MGP_C57BL6NJ_P0069938 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069939.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160665017 160735928 - MGP_C57BL6NJ_P0069939 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069940.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160691250 160747963 - Camta1 protein_coding processed_transcript MGP_C57BL6NJ_T0069941.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 160691335 160713503 - MGP_C57BL6NJ_P0069941 Camta1 protein_coding protein_coding MGP_C57BL6NJ_T0069943.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 161094923 161531477 - Camta1 protein_coding processed_transcript MGP_C57BL6NJ_T0069944.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 161441177 161531531 - MGP_C57BL6NJ_P0069944 Camta1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069945.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 161451298 161531531 - Camta1 protein_coding processed_transcript MGP_C57BL6NJ_T0069946.1 MGP_C57BL6NJ_G0029589.1 mouse_genomes_project 4 161452954 161531565 - Camta1 protein_coding processed_transcript MGP_C57BL6NJ_T0068306.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352579 133388623 + MGP_C57BL6NJ_P0068306 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068307.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352588 133388734 + MGP_C57BL6NJ_P0068307 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068308.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352590 133467965 + MGP_C57BL6NJ_P0068308 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068309.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352805 133450685 + MGP_C57BL6NJ_P0068309 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068310.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352805 133467965 + MGP_C57BL6NJ_P0068310 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068311.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352829 133388637 + MGP_C57BL6NJ_P0068311 AU040320 protein_coding protein_coding MGP_C57BL6NJ_T0068312.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352849 133385065 + AU040320 protein_coding processed_transcript MGP_C57BL6NJ_T0068313.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133352861 133353769 + AU040320 protein_coding processed_transcript MGP_C57BL6NJ_T0068314.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133411755 133428462 + AU040320 protein_coding processed_transcript MGP_C57BL6NJ_T0068315.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133431642 133436096 + AU040320 protein_coding processed_transcript MGP_C57BL6NJ_T0068316.1 MGP_C57BL6NJ_G0029212.1 mouse_genomes_project 4 133446865 133449900 + AU040320 protein_coding processed_transcript MGP_C57BL6NJ_T0101697.1 MGP_C57BL6NJ_G0039743.1 mouse_genomes_project 4 123770376 123770480 + Gm23382 snoRNA snoRNA MGP_C57BL6NJ_T0065871.1 MGP_C57BL6NJ_G0028637.1 mouse_genomes_project 4 43353586 43363656 - MGP_C57BL6NJ_P0065871 Fam221b protein_coding protein_coding MGP_C57BL6NJ_T0065872.1 MGP_C57BL6NJ_G0028637.1 mouse_genomes_project 4 43357060 43363660 - Fam221b protein_coding retained_intron MGP_C57BL6NJ_T0014872.1 MGP_C57BL6NJ_G0012917.1 mouse_genomes_project 4 40504469 40504803 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066218.1 MGP_C57BL6NJ_G0028723.1 mouse_genomes_project 4 54348234 54361851 + MGP_C57BL6NJ_P0066218 Tal2 protein_coding protein_coding MGP_C57BL6NJ_T0066730.1 MGP_C57BL6NJ_G0028843.1 mouse_genomes_project 4 91828709 91829279 - MGP_C57BL6NJ_P0066730 Ifna14 protein_coding protein_coding MGP_C57BL6NJ_T0008044.1 MGP_C57BL6NJ_G0006576.1 mouse_genomes_project 4 65454224 65479506 - Gm11217 lincRNA lincRNA MGP_C57BL6NJ_T0065522.1 MGP_C57BL6NJ_G0028561.1 mouse_genomes_project 4 40280024 40291908 - MGP_C57BL6NJ_P0065522 Bag1 protein_coding protein_coding MGP_C57BL6NJ_T0065523.1 MGP_C57BL6NJ_G0028561.1 mouse_genomes_project 4 40280025 40291921 - MGP_C57BL6NJ_P0065523 Bag1 protein_coding protein_coding MGP_C57BL6NJ_T0065524.1 MGP_C57BL6NJ_G0028561.1 mouse_genomes_project 4 40280027 40291870 - MGP_C57BL6NJ_P0065524 Bag1 protein_coding protein_coding MGP_C57BL6NJ_T0015154.1 MGP_C57BL6NJ_G0013199.1 mouse_genomes_project 4 141085080 141085263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069590.1 MGP_C57BL6NJ_G0029502.1 mouse_genomes_project 4 152189630 152192352 - MGP_C57BL6NJ_P0069590 protein_coding protein_coding MGP_C57BL6NJ_T0069597.1 MGP_C57BL6NJ_G0029502.1 mouse_genomes_project 4 152190098 152192338 - MGP_C57BL6NJ_P0069597 protein_coding protein_coding MGP_C57BL6NJ_T0068959.1 MGP_C57BL6NJ_G0029345.1 mouse_genomes_project 4 141521218 141524215 - MGP_C57BL6NJ_P0068959 Grrp1 protein_coding protein_coding MGP_C57BL6NJ_T0068960.1 MGP_C57BL6NJ_G0029345.1 mouse_genomes_project 4 141521814 141523132 - Grrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0065074.1 MGP_C57BL6NJ_G0028452.1 mouse_genomes_project 4 5409986 5484363 + MGP_C57BL6NJ_P0065074 Rab2a protein_coding protein_coding MGP_C57BL6NJ_T0069481.1 MGP_C57BL6NJ_G0029468.1 mouse_genomes_project 4 149450292 149467170 + MGP_C57BL6NJ_P0069481 Fam131c protein_coding protein_coding MGP_C57BL6NJ_T0070142.1 MGP_C57BL6NJ_G0029627.1 mouse_genomes_project 4 164268124 164281916 + MGP_C57BL6NJ_P0070142 B230104I21Rik protein_coding protein_coding MGP_C57BL6NJ_T0067769.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123235133 123242706 - Dmap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067770.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123235133 123242726 - MGP_C57BL6NJ_P0067770 Dmap1 protein_coding protein_coding MGP_C57BL6NJ_T0067771.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123235138 123242436 - Dmap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067772.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123241372 123242674 - Dmap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067773.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123241754 123242664 - Dmap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067774.1 MGP_C57BL6NJ_G0029075.1 mouse_genomes_project 4 123242039 123242724 - Dmap1 protein_coding processed_transcript MGP_C57BL6NJ_T0018503.1 MGP_C57BL6NJ_G0015931.1 mouse_genomes_project 4 31716323 31720734 - 4933421O10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0066924.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767738 103785964 + Alg6 protein_coding retained_intron MGP_C57BL6NJ_T0066925.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767739 103813673 + Alg6 protein_coding retained_intron MGP_C57BL6NJ_T0066926.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767739 103814822 + MGP_C57BL6NJ_P0066926 Alg6 protein_coding protein_coding MGP_C57BL6NJ_T0066927.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767750 103797817 + Alg6 protein_coding processed_transcript MGP_C57BL6NJ_T0066928.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767750 103804438 + MGP_C57BL6NJ_P0066928 Alg6 protein_coding protein_coding MGP_C57BL6NJ_T0066929.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103767750 103804247 + MGP_C57BL6NJ_P0066929 Alg6 protein_coding protein_coding MGP_C57BL6NJ_T0066930.1 MGP_C57BL6NJ_G0028902.1 mouse_genomes_project 4 103774911 103790906 + Alg6 protein_coding retained_intron MGP_C57BL6NJ_T0004631.1 MGP_C57BL6NJ_G0004029.1 mouse_genomes_project 4 91261804 91263302 + Gm12631 antisense antisense MGP_C57BL6NJ_T0067989.1 MGP_C57BL6NJ_G0029127.1 mouse_genomes_project 4 125434702 125436474 + MGP_C57BL6NJ_P0067989 Guca2a protein_coding protein_coding MGP_C57BL6NJ_T0065496.1 MGP_C57BL6NJ_G0028554.1 mouse_genomes_project 4 39567065 39577927 - MGP_C57BL6NJ_P0065496 Ndufb6 protein_coding protein_coding MGP_C57BL6NJ_T0065497.1 MGP_C57BL6NJ_G0028554.1 mouse_genomes_project 4 39567139 39577915 - MGP_C57BL6NJ_P0065497 Ndufb6 protein_coding protein_coding MGP_C57BL6NJ_T0004742.1 MGP_C57BL6NJ_G0004109.1 mouse_genomes_project 4 150353704 150357242 + Gm13062 antisense antisense MGP_C57BL6NJ_T0065000.1 MGP_C57BL6NJ_G0028435.1 mouse_genomes_project 4 120553 167216 + MGP_C57BL6NJ_P0065000 Tgs1 protein_coding protein_coding MGP_C57BL6NJ_T0065001.1 MGP_C57BL6NJ_G0028435.1 mouse_genomes_project 4 120628 129610 + Tgs1 protein_coding retained_intron MGP_C57BL6NJ_T0065002.1 MGP_C57BL6NJ_G0028435.1 mouse_genomes_project 4 139580 144601 + Tgs1 protein_coding processed_transcript MGP_C57BL6NJ_T0065003.1 MGP_C57BL6NJ_G0028435.1 mouse_genomes_project 4 144548 154057 + Tgs1 protein_coding retained_intron MGP_C57BL6NJ_T0065004.1 MGP_C57BL6NJ_G0028435.1 mouse_genomes_project 4 157142 165880 + Tgs1 protein_coding retained_intron MGP_C57BL6NJ_T0067763.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123104775 123234750 + MGP_C57BL6NJ_P0067763 Eri3 protein_coding protein_coding MGP_C57BL6NJ_T0067764.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123107020 123139522 + MGP_C57BL6NJ_P0067764 Eri3 protein_coding protein_coding MGP_C57BL6NJ_T0067765.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123120281 123234750 + Eri3 protein_coding processed_transcript MGP_C57BL6NJ_T0067766.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123139491 123172449 + MGP_C57BL6NJ_P0067766 Eri3 protein_coding protein_coding MGP_C57BL6NJ_T0067767.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123145882 123172108 + Eri3 protein_coding processed_transcript MGP_C57BL6NJ_T0067768.1 MGP_C57BL6NJ_G0029074.1 mouse_genomes_project 4 123195042 123234734 + Eri3 protein_coding processed_transcript MGP_C57BL6NJ_T0067689.1 MGP_C57BL6NJ_G0029060.1 mouse_genomes_project 4 122293616 122295420 - MGP_C57BL6NJ_P0067689 Hpdl protein_coding protein_coding MGP_C57BL6NJ_T0065395.1 MGP_C57BL6NJ_G0028529.1 mouse_genomes_project 4 31753393 31794034 + MGP_C57BL6NJ_P0065395 Gabrr2 protein_coding protein_coding MGP_C57BL6NJ_T0065396.1 MGP_C57BL6NJ_G0028529.1 mouse_genomes_project 4 31753506 31794034 + MGP_C57BL6NJ_P0065396 Gabrr2 protein_coding protein_coding MGP_C57BL6NJ_T0065397.1 MGP_C57BL6NJ_G0028529.1 mouse_genomes_project 4 31773487 31780256 + MGP_C57BL6NJ_P0065397 Gabrr2 protein_coding protein_coding MGP_C57BL6NJ_T0065398.1 MGP_C57BL6NJ_G0028529.1 mouse_genomes_project 4 31776196 31780512 + MGP_C57BL6NJ_P0065398 Gabrr2 protein_coding protein_coding MGP_C57BL6NJ_T0015076.1 MGP_C57BL6NJ_G0013121.1 mouse_genomes_project 4 116708135 116709127 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069644.1 MGP_C57BL6NJ_G0029534.1 mouse_genomes_project 4 155479864 155485348 + MGP_C57BL6NJ_P0069644 protein_coding protein_coding MGP_C57BL6NJ_T0014924.1 MGP_C57BL6NJ_G0012969.1 mouse_genomes_project 4 56067669 56068021 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066989.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106295565 106879222 + MGP_C57BL6NJ_P0066989 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066990.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106295747 106414058 + Pde4b protein_coding retained_intron MGP_C57BL6NJ_T0066991.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106295763 106830121 + MGP_C57BL6NJ_P0066991 Pde4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066992.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106475910 106828448 + MGP_C57BL6NJ_P0066992 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066993.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106476171 106880648 + MGP_C57BL6NJ_P0066993 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066994.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106476398 106775584 + MGP_C57BL6NJ_P0066994 Pde4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066995.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106677231 106878925 + MGP_C57BL6NJ_P0066995 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066996.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106685760 106815086 + MGP_C57BL6NJ_P0066996 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066997.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106732759 106754763 + Pde4b protein_coding retained_intron MGP_C57BL6NJ_T0066998.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106842588 106879236 + MGP_C57BL6NJ_P0066998 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0066999.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106860949 106879092 + MGP_C57BL6NJ_P0066999 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0067000.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106863114 106879250 + MGP_C57BL6NJ_P0067000 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0067001.1 MGP_C57BL6NJ_G0028922.1 mouse_genomes_project 4 106863234 106876832 + MGP_C57BL6NJ_P0067001 Pde4b protein_coding protein_coding MGP_C57BL6NJ_T0103159.1 MGP_C57BL6NJ_G0040953.1 mouse_genomes_project 4 120914287 120917005 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004646.1 MGP_C57BL6NJ_G0004034.1 mouse_genomes_project 4 102748785 102753918 + Kank4os antisense antisense MGP_C57BL6NJ_T0004783.1 MGP_C57BL6NJ_G0004140.1 mouse_genomes_project 4 166073223 166075040 - Gm16008 antisense antisense MGP_C57BL6NJ_T0004784.1 MGP_C57BL6NJ_G0004140.1 mouse_genomes_project 4 166074942 166084979 - Gm16008 antisense antisense MGP_C57BL6NJ_T0004785.1 MGP_C57BL6NJ_G0004140.1 mouse_genomes_project 4 166079632 166084958 - Gm16008 antisense antisense MGP_C57BL6NJ_T0010902.1 MGP_C57BL6NJ_G0008987.1 mouse_genomes_project 4 166116228 166116318 - Mir200a miRNA miRNA MGP_C57BL6NJ_T0067990.1 MGP_C57BL6NJ_G0029128.1 mouse_genomes_project 4 125447331 125449455 - MGP_C57BL6NJ_P0067990 Guca2b protein_coding protein_coding MGP_C57BL6NJ_T0067991.1 MGP_C57BL6NJ_G0029128.1 mouse_genomes_project 4 125447331 125449628 - MGP_C57BL6NJ_P0067991 Guca2b protein_coding protein_coding MGP_C57BL6NJ_T0069569.1 MGP_C57BL6NJ_G0029490.1 mouse_genomes_project 4 151341205 151451176 - MGP_C57BL6NJ_P0069569 Prdm2 protein_coding protein_coding MGP_C57BL6NJ_T0069570.1 MGP_C57BL6NJ_G0029490.1 mouse_genomes_project 4 151396084 151431451 - MGP_C57BL6NJ_P0069570 Prdm2 protein_coding protein_coding MGP_C57BL6NJ_T0069571.1 MGP_C57BL6NJ_G0029490.1 mouse_genomes_project 4 151396108 151451180 - MGP_C57BL6NJ_P0069571 Prdm2 protein_coding protein_coding MGP_C57BL6NJ_T0069572.1 MGP_C57BL6NJ_G0029490.1 mouse_genomes_project 4 151414027 151451466 - Prdm2 protein_coding processed_transcript MGP_C57BL6NJ_T0007985.1 MGP_C57BL6NJ_G0006525.1 mouse_genomes_project 4 13899836 13951108 + Gm11861 lincRNA lincRNA MGP_C57BL6NJ_T0068317.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133460407 133575651 - MGP_C57BL6NJ_P0068317 Zmym4 protein_coding protein_coding MGP_C57BL6NJ_T0068318.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133466557 133468368 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068319.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133505631 133517647 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068320.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133510832 133517535 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068321.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133517364 133525373 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068322.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133525011 133530225 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068323.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133530223 133575696 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0068324.1 MGP_C57BL6NJ_G0029213.1 mouse_genomes_project 4 133530256 133575720 - Zmym4 protein_coding processed_transcript MGP_C57BL6NJ_T0014743.1 MGP_C57BL6NJ_G0012788.1 mouse_genomes_project 4 3837969 3838437 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015034.1 MGP_C57BL6NJ_G0013079.1 mouse_genomes_project 4 103420994 103421208 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066675.1 MGP_C57BL6NJ_G0028831.1 mouse_genomes_project 4 89609860 89611479 + MGP_C57BL6NJ_P0066675 Rraga protein_coding protein_coding MGP_C57BL6NJ_T0066023.1 MGP_C57BL6NJ_G0028669.1 mouse_genomes_project 4 45799091 45818377 + Ccdc180 protein_coding processed_transcript MGP_C57BL6NJ_T0066024.1 MGP_C57BL6NJ_G0028669.1 mouse_genomes_project 4 45799091 45860865 + MGP_C57BL6NJ_P0066024 Ccdc180 protein_coding protein_coding MGP_C57BL6NJ_T0066025.1 MGP_C57BL6NJ_G0028669.1 mouse_genomes_project 4 45799640 45860858 + MGP_C57BL6NJ_P0066025 Ccdc180 protein_coding protein_coding MGP_C57BL6NJ_T0066026.1 MGP_C57BL6NJ_G0028669.1 mouse_genomes_project 4 45823126 45830631 + MGP_C57BL6NJ_P0066026 Ccdc180 protein_coding protein_coding MGP_C57BL6NJ_T0015082.1 MGP_C57BL6NJ_G0013127.1 mouse_genomes_project 4 117973916 117975368 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001565.1 MGP_C57BL6NJ_G0001464.1 mouse_genomes_project 4 159540640 159544545 + TEC TEC MGP_C57BL6NJ_T0066557.1 MGP_C57BL6NJ_G0028814.1 mouse_genomes_project 4 82626599 82627743 + MGP_C57BL6NJ_P0066557 protein_coding protein_coding MGP_C57BL6NJ_T0066118.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48387973 48415030 + Invs protein_coding processed_transcript MGP_C57BL6NJ_T0066119.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48388013 48389269 + Invs protein_coding processed_transcript MGP_C57BL6NJ_T0066120.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48388015 48547242 + MGP_C57BL6NJ_P0066120 Invs protein_coding protein_coding MGP_C57BL6NJ_T0066121.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48388029 48396410 + Invs protein_coding processed_transcript MGP_C57BL6NJ_T0066122.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48388039 48542639 + MGP_C57BL6NJ_P0066122 Invs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066123.1 MGP_C57BL6NJ_G0028693.1 mouse_genomes_project 4 48496185 48512042 + Invs protein_coding processed_transcript MGP_C57BL6NJ_T0015035.1 MGP_C57BL6NJ_G0013080.1 mouse_genomes_project 4 103421269 103421666 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103150.1 MGP_C57BL6NJ_G0040944.1 mouse_genomes_project 4 99995852 100026824 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008190.1 MGP_C57BL6NJ_G0006683.1 mouse_genomes_project 4 148912860 148918243 + 4930515B02Rik lincRNA lincRNA MGP_C57BL6NJ_T0065588.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41092124 41137517 - MGP_C57BL6NJ_P0065588 Cntfr protein_coding protein_coding MGP_C57BL6NJ_T0065589.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41092124 41139126 - MGP_C57BL6NJ_P0065589 Cntfr protein_coding protein_coding MGP_C57BL6NJ_T0065590.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41099134 41099901 - Cntfr protein_coding processed_transcript MGP_C57BL6NJ_T0065591.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41105396 41137520 - MGP_C57BL6NJ_P0065591 Cntfr protein_coding protein_coding MGP_C57BL6NJ_T0065592.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41105396 41139175 - MGP_C57BL6NJ_P0065592 Cntfr protein_coding protein_coding MGP_C57BL6NJ_T0065593.1 MGP_C57BL6NJ_G0028578.1 mouse_genomes_project 4 41106704 41138010 - MGP_C57BL6NJ_P0065593 Cntfr protein_coding protein_coding MGP_C57BL6NJ_T0068755.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686194 139746270 + MGP_C57BL6NJ_P0068755 Eya3 protein_coding protein_coding MGP_C57BL6NJ_T0068756.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686253 139779254 + MGP_C57BL6NJ_P0068756 Eya3 protein_coding protein_coding MGP_C57BL6NJ_T0068757.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686263 139779251 + MGP_C57BL6NJ_P0068757 Eya3 protein_coding protein_coding MGP_C57BL6NJ_T0068758.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686265 139750629 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068759.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686271 139744481 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068760.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686285 139776717 + MGP_C57BL6NJ_P0068760 Eya3 protein_coding protein_coding MGP_C57BL6NJ_T0068761.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686286 139775517 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068762.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686292 139776859 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068763.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139686324 139746455 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068764.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139704281 139776825 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068765.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139752562 139764820 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0068766.1 MGP_C57BL6NJ_G0029300.1 mouse_genomes_project 4 139755941 139775031 + Eya3 protein_coding processed_transcript MGP_C57BL6NJ_T0067917.1 MGP_C57BL6NJ_G0029114.1 mouse_genomes_project 4 124949370 124955363 + MGP_C57BL6NJ_P0067917 Svbp protein_coding protein_coding MGP_C57BL6NJ_T0067918.1 MGP_C57BL6NJ_G0029114.1 mouse_genomes_project 4 124949471 124955363 + MGP_C57BL6NJ_P0067918 Svbp protein_coding protein_coding MGP_C57BL6NJ_T0067919.1 MGP_C57BL6NJ_G0029114.1 mouse_genomes_project 4 124949560 124955363 + MGP_C57BL6NJ_P0067919 Svbp protein_coding protein_coding MGP_C57BL6NJ_T0014958.1 MGP_C57BL6NJ_G0013003.1 mouse_genomes_project 4 74706933 74707531 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014836.1 MGP_C57BL6NJ_G0012881.1 mouse_genomes_project 4 30660514 30662485 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065329.1 MGP_C57BL6NJ_G0028514.1 mouse_genomes_project 4 23276508 23323807 - MGP_C57BL6NJ_P0065329 Fhl5 protein_coding protein_coding MGP_C57BL6NJ_T0065330.1 MGP_C57BL6NJ_G0028514.1 mouse_genomes_project 4 23276508 23323807 - MGP_C57BL6NJ_P0065330 Fhl5 protein_coding protein_coding MGP_C57BL6NJ_T0068212.1 MGP_C57BL6NJ_G0029191.1 mouse_genomes_project 4 132548267 132570061 + MGP_C57BL6NJ_P0068212 Csf3r protein_coding protein_coding MGP_C57BL6NJ_T0068213.1 MGP_C57BL6NJ_G0029191.1 mouse_genomes_project 4 132548443 132555612 + Csf3r protein_coding processed_transcript MGP_C57BL6NJ_T0068214.1 MGP_C57BL6NJ_G0029191.1 mouse_genomes_project 4 132551009 132570060 + MGP_C57BL6NJ_P0068214 Csf3r protein_coding protein_coding MGP_C57BL6NJ_T0068215.1 MGP_C57BL6NJ_G0029191.1 mouse_genomes_project 4 132562414 132568206 + Csf3r protein_coding processed_transcript MGP_C57BL6NJ_T0015086.1 MGP_C57BL6NJ_G0013131.1 mouse_genomes_project 4 120745800 120746125 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066314.1 MGP_C57BL6NJ_G0028747.1 mouse_genomes_project 4 59682881 59683823 - MGP_C57BL6NJ_P0066314 Olfr267 protein_coding protein_coding MGP_C57BL6NJ_T0069075.1 MGP_C57BL6NJ_G0029370.1 mouse_genomes_project 4 142911591 142947672 - MGP_C57BL6NJ_P0069075 Grhl3 protein_coding protein_coding MGP_C57BL6NJ_T0069076.1 MGP_C57BL6NJ_G0029370.1 mouse_genomes_project 4 142912362 142947466 - MGP_C57BL6NJ_P0069076 Grhl3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004624.1 MGP_C57BL6NJ_G0004022.1 mouse_genomes_project 4 64526556 64539234 + Aknaos antisense antisense MGP_C57BL6NJ_T0101681.1 MGP_C57BL6NJ_G0039727.1 mouse_genomes_project 4 84079149 84079280 - Gm25803 snoRNA snoRNA MGP_C57BL6NJ_T0066776.1 MGP_C57BL6NJ_G0028868.1 mouse_genomes_project 4 98161563 98221564 - MGP_C57BL6NJ_P0066776 Caap1 protein_coding protein_coding MGP_C57BL6NJ_T0066777.1 MGP_C57BL6NJ_G0028868.1 mouse_genomes_project 4 98213644 98221534 - Caap1 protein_coding processed_transcript MGP_C57BL6NJ_T0015163.1 MGP_C57BL6NJ_G0013208.1 mouse_genomes_project 4 143248466 143248962 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067890.1 MGP_C57BL6NJ_G0029104.1 mouse_genomes_project 4 124481058 124484227 - MGP_C57BL6NJ_P0067890 protein_coding protein_coding MGP_C57BL6NJ_T0067471.1 MGP_C57BL6NJ_G0029010.1 mouse_genomes_project 4 117702392 117768354 - MGP_C57BL6NJ_P0067471 Skint10 protein_coding protein_coding MGP_C57BL6NJ_T0067472.1 MGP_C57BL6NJ_G0029010.1 mouse_genomes_project 4 117763241 117768395 - MGP_C57BL6NJ_P0067472 Skint10 protein_coding protein_coding MGP_C57BL6NJ_T0067473.1 MGP_C57BL6NJ_G0029010.1 mouse_genomes_project 4 117764670 117768356 - Skint10 protein_coding processed_transcript MGP_C57BL6NJ_T0069019.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142263228 142267308 + Rsrp1 protein_coding retained_intron MGP_C57BL6NJ_T0069020.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142263228 142267308 + MGP_C57BL6NJ_P0069020 Rsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0069021.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142263229 142265060 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069022.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142263262 142264970 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069023.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142263281 142267009 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069024.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142264096 142267009 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069025.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142264346 142264992 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0069026.1 MGP_C57BL6NJ_G0029361.1 mouse_genomes_project 4 142265082 142266590 + Rsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0015187.1 MGP_C57BL6NJ_G0013232.1 mouse_genomes_project 4 152614684 152616237 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004592.1 MGP_C57BL6NJ_G0003994.1 mouse_genomes_project 4 33822449 33827195 + Gm12364 antisense antisense MGP_C57BL6NJ_T0065171.1 MGP_C57BL6NJ_G0028469.1 mouse_genomes_project 4 8817966 8818872 - MGP_C57BL6NJ_P0065171 Olfr1458 protein_coding protein_coding MGP_C57BL6NJ_T0066824.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99719058 99774841 + MGP_C57BL6NJ_P0066824 Hook1 protein_coding protein_coding MGP_C57BL6NJ_T0066825.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99719181 99761883 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066826.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99719187 99744903 + MGP_C57BL6NJ_P0066826 Hook1 protein_coding protein_coding MGP_C57BL6NJ_T0066827.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99726204 99771770 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066828.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99747870 99755928 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066829.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99749044 99756321 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066830.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99750737 99771912 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066831.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99759695 99769055 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066832.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99765611 99767105 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066833.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99769438 99771659 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0066834.1 MGP_C57BL6NJ_G0028878.1 mouse_genomes_project 4 99770668 99774819 + Hook1 protein_coding processed_transcript MGP_C57BL6NJ_T0014851.1 MGP_C57BL6NJ_G0012896.1 mouse_genomes_project 4 33763663 33765004 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068877.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194870 141198048 - MGP_C57BL6NJ_P0068877 protein_coding protein_coding MGP_C57BL6NJ_T0068878.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194932 141197307 - protein_coding retained_intron MGP_C57BL6NJ_T0068879.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194932 141196673 - protein_coding processed_transcript MGP_C57BL6NJ_T0068880.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194932 141196649 - protein_coding processed_transcript MGP_C57BL6NJ_T0068881.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194932 141198048 - protein_coding processed_transcript MGP_C57BL6NJ_T0068882.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194932 141197292 - MGP_C57BL6NJ_P0068882 protein_coding protein_coding MGP_C57BL6NJ_T0068883.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194986 141197289 - protein_coding retained_intron MGP_C57BL6NJ_T0068884.1 MGP_C57BL6NJ_G0029330.1 mouse_genomes_project 4 141194996 141197259 - protein_coding retained_intron MGP_C57BL6NJ_T0100353.1 MGP_C57BL6NJ_G0038399.1 mouse_genomes_project 4 58718882 58718989 - Gm26138 snRNA snRNA MGP_C57BL6NJ_T0068491.1 MGP_C57BL6NJ_G0029253.1 mouse_genomes_project 4 136455479 136456122 - Fam167b protein_coding processed_transcript MGP_C57BL6NJ_T0068492.1 MGP_C57BL6NJ_G0029253.1 mouse_genomes_project 4 136455479 136457214 - MGP_C57BL6NJ_P0068492 Fam167b protein_coding protein_coding MGP_C57BL6NJ_T0015213.1 MGP_C57BL6NJ_G0013258.1 mouse_genomes_project 4 157834639 157835460 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065242.1 MGP_C57BL6NJ_G0028492.1 mouse_genomes_project 4 17202206 17258904 - MGP_C57BL6NJ_P0065242 Cpne3 protein_coding protein_coding MGP_C57BL6NJ_T0065243.1 MGP_C57BL6NJ_G0028492.1 mouse_genomes_project 4 17225073 17228140 - Cpne3 protein_coding processed_transcript MGP_C57BL6NJ_T0065244.1 MGP_C57BL6NJ_G0028492.1 mouse_genomes_project 4 17234203 17258879 - Cpne3 protein_coding retained_intron MGP_C57BL6NJ_T0067461.1 MGP_C57BL6NJ_G0029006.1 mouse_genomes_project 4 117052406 117148588 + MGP_C57BL6NJ_P0067461 Skint4 protein_coding protein_coding MGP_C57BL6NJ_T0067462.1 MGP_C57BL6NJ_G0029006.1 mouse_genomes_project 4 117053029 117148598 + MGP_C57BL6NJ_P0067462 Skint4 protein_coding protein_coding MGP_C57BL6NJ_T0067463.1 MGP_C57BL6NJ_G0029006.1 mouse_genomes_project 4 117062204 117149278 + MGP_C57BL6NJ_P0067463 Skint4 protein_coding protein_coding MGP_C57BL6NJ_T0068073.1 MGP_C57BL6NJ_G0029153.1 mouse_genomes_project 4 129149023 129163320 - Mfsd2a protein_coding processed_transcript MGP_C57BL6NJ_T0068074.1 MGP_C57BL6NJ_G0029153.1 mouse_genomes_project 4 129149023 129163356 - MGP_C57BL6NJ_P0068074 Mfsd2a protein_coding protein_coding MGP_C57BL6NJ_T0068075.1 MGP_C57BL6NJ_G0029153.1 mouse_genomes_project 4 129158901 129162158 - Mfsd2a protein_coding processed_transcript MGP_C57BL6NJ_T0068076.1 MGP_C57BL6NJ_G0029153.1 mouse_genomes_project 4 129158928 129163356 - MGP_C57BL6NJ_P0068076 Mfsd2a protein_coding protein_coding MGP_C57BL6NJ_T0069492.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149531077 149553854 + MGP_C57BL6NJ_P0069492 Zbtb17 protein_coding protein_coding MGP_C57BL6NJ_T0069493.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149531107 149554559 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0069494.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149531122 149553854 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0069495.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149531129 149545958 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0069496.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149550011 149551676 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0069497.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149551446 149552697 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0069498.1 MGP_C57BL6NJ_G0029473.1 mouse_genomes_project 4 149552043 149553698 + Zbtb17 protein_coding processed_transcript MGP_C57BL6NJ_T0068855.1 MGP_C57BL6NJ_G0029325.1 mouse_genomes_project 4 140743287 140747393 - MGP_C57BL6NJ_P0068855 protein_coding protein_coding MGP_C57BL6NJ_T0099452.1 MGP_C57BL6NJ_G0037509.1 mouse_genomes_project 4 150191785 150197452 - Gm13053 sense_intronic sense_intronic MGP_C57BL6NJ_T0100401.1 MGP_C57BL6NJ_G0038447.1 mouse_genomes_project 4 140974803 140974941 - Gm25270 snRNA snRNA MGP_C57BL6NJ_T0015192.1 MGP_C57BL6NJ_G0013237.1 mouse_genomes_project 4 153782679 153783314 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014948.1 MGP_C57BL6NJ_G0012993.1 mouse_genomes_project 4 70863666 70867151 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066975.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105886441 105976952 + MGP_C57BL6NJ_P0066975 Lepr protein_coding protein_coding MGP_C57BL6NJ_T0066976.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105886441 105978637 + MGP_C57BL6NJ_P0066976 Lepr protein_coding protein_coding MGP_C57BL6NJ_T0066977.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105886441 105960329 + MGP_C57BL6NJ_P0066977 Lepr protein_coding protein_coding MGP_C57BL6NJ_T0066978.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105886444 105909065 + MGP_C57BL6NJ_P0066978 Lepr protein_coding protein_coding MGP_C57BL6NJ_T0066979.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105937579 105948986 + Lepr protein_coding processed_transcript MGP_C57BL6NJ_T0066980.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105939964 105952312 + Lepr protein_coding processed_transcript MGP_C57BL6NJ_T0066981.1 MGP_C57BL6NJ_G0028915.1 mouse_genomes_project 4 105957333 105960227 + Lepr protein_coding processed_transcript MGP_C57BL6NJ_T0014999.1 MGP_C57BL6NJ_G0013044.1 mouse_genomes_project 4 89916273 89917057 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067605.1 MGP_C57BL6NJ_G0029044.1 mouse_genomes_project 4 121565134 121570866 - MGP_C57BL6NJ_P0067605 Tspan1 protein_coding protein_coding MGP_C57BL6NJ_T0067606.1 MGP_C57BL6NJ_G0029044.1 mouse_genomes_project 4 121566573 121570867 - MGP_C57BL6NJ_P0067606 Tspan1 protein_coding protein_coding MGP_C57BL6NJ_T0067607.1 MGP_C57BL6NJ_G0029044.1 mouse_genomes_project 4 121566597 121568099 - Tspan1 protein_coding retained_intron MGP_C57BL6NJ_T0068849.1 MGP_C57BL6NJ_G0029322.1 mouse_genomes_project 4 140691627 140694796 + MGP_C57BL6NJ_P0068849 Nr0b2 protein_coding protein_coding MGP_C57BL6NJ_T0067888.1 MGP_C57BL6NJ_G0029102.1 mouse_genomes_project 4 124395509 124396457 + MGP_C57BL6NJ_P0067888 Olfr1339 protein_coding protein_coding MGP_C57BL6NJ_T0067627.1 MGP_C57BL6NJ_G0029048.1 mouse_genomes_project 4 121947177 121986701 + MGP_C57BL6NJ_P0067627 Ipp protein_coding protein_coding MGP_C57BL6NJ_T0067628.1 MGP_C57BL6NJ_G0029048.1 mouse_genomes_project 4 121947180 121986709 + MGP_C57BL6NJ_P0067628 Ipp protein_coding protein_coding MGP_C57BL6NJ_T0014881.1 MGP_C57BL6NJ_G0012926.1 mouse_genomes_project 4 45676615 45676943 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010864.1 MGP_C57BL6NJ_G0008949.1 mouse_genomes_project 4 133137839 133137898 + Mir7119 miRNA miRNA MGP_C57BL6NJ_T0011824.1 MGP_C57BL6NJ_G0009909.1 mouse_genomes_project 4 46045574 46045841 + Gm23250 misc_RNA misc_RNA MGP_C57BL6NJ_T0070404.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166233740 166237537 - Agrn protein_coding retained_intron MGP_C57BL6NJ_T0070405.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166233740 166254352 - MGP_C57BL6NJ_P0070405 Agrn protein_coding protein_coding MGP_C57BL6NJ_T0070406.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166233740 166254352 - MGP_C57BL6NJ_P0070406 Agrn protein_coding protein_coding MGP_C57BL6NJ_T0070407.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166233740 166254352 - MGP_C57BL6NJ_P0070407 Agrn protein_coding protein_coding MGP_C57BL6NJ_T0070408.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166233744 166254558 - Agrn protein_coding retained_intron MGP_C57BL6NJ_T0070409.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166234228 166265939 - MGP_C57BL6NJ_P0070409 Agrn protein_coding protein_coding MGP_C57BL6NJ_T0070410.1 MGP_C57BL6NJ_G0029677.1 mouse_genomes_project 4 166240749 166242181 - Agrn protein_coding processed_transcript MGP_C57BL6NJ_T0015195.1 MGP_C57BL6NJ_G0013240.1 mouse_genomes_project 4 153782683 153783309 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069146.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797243 143861800 + MGP_C57BL6NJ_P0069146 protein_coding protein_coding MGP_C57BL6NJ_T0069147.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797269 143881632 + MGP_C57BL6NJ_P0069147 protein_coding protein_coding MGP_C57BL6NJ_T0069148.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797269 143861800 + MGP_C57BL6NJ_P0069148 protein_coding protein_coding MGP_C57BL6NJ_T0069149.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797326 143861982 + MGP_C57BL6NJ_P0069149 protein_coding protein_coding MGP_C57BL6NJ_T0069150.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797329 143837576 + MGP_C57BL6NJ_P0069150 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069151.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797836 143822139 + MGP_C57BL6NJ_P0069151 protein_coding protein_coding MGP_C57BL6NJ_T0069152.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797892 143837604 + MGP_C57BL6NJ_P0069152 protein_coding protein_coding MGP_C57BL6NJ_T0069153.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143797986 143802725 + MGP_C57BL6NJ_P0069153 protein_coding protein_coding MGP_C57BL6NJ_T0069154.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143857191 143860392 + protein_coding retained_intron MGP_C57BL6NJ_T0069155.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143860137 143864085 + protein_coding retained_intron MGP_C57BL6NJ_T0069156.1 MGP_C57BL6NJ_G0029389.1 mouse_genomes_project 4 143877958 143880227 + protein_coding processed_transcript MGP_C57BL6NJ_T0067509.1 MGP_C57BL6NJ_G0029022.1 mouse_genomes_project 4 120359746 120395082 - MGP_C57BL6NJ_P0067509 Cyp4x1 protein_coding protein_coding MGP_C57BL6NJ_T0067510.1 MGP_C57BL6NJ_G0029022.1 mouse_genomes_project 4 120364115 120394778 - MGP_C57BL6NJ_P0067510 Cyp4x1 protein_coding protein_coding MGP_C57BL6NJ_T0068995.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141823836 141835821 - MGP_C57BL6NJ_P0068995 Mtfr1l protein_coding protein_coding MGP_C57BL6NJ_T0068996.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141823843 141835940 - MGP_C57BL6NJ_P0068996 Mtfr1l protein_coding protein_coding MGP_C57BL6NJ_T0068997.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141823850 141835851 - MGP_C57BL6NJ_P0068997 Mtfr1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068998.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141828946 141835811 - Mtfr1l protein_coding retained_intron MGP_C57BL6NJ_T0068999.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141829703 141835649 - MGP_C57BL6NJ_P0068999 Mtfr1l protein_coding protein_coding MGP_C57BL6NJ_T0069000.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141829738 141835940 - MGP_C57BL6NJ_P0069000 Mtfr1l protein_coding protein_coding MGP_C57BL6NJ_T0069001.1 MGP_C57BL6NJ_G0029354.1 mouse_genomes_project 4 141829810 141835597 - Mtfr1l protein_coding retained_intron MGP_C57BL6NJ_T0067476.1 MGP_C57BL6NJ_G0029012.1 mouse_genomes_project 4 118539244 119139735 - MGP_C57BL6NJ_P0067476 Skint5 protein_coding protein_coding MGP_C57BL6NJ_T0067477.1 MGP_C57BL6NJ_G0029012.1 mouse_genomes_project 4 118539244 119139735 - MGP_C57BL6NJ_P0067477 Skint5 protein_coding protein_coding MGP_C57BL6NJ_T0067478.1 MGP_C57BL6NJ_G0029012.1 mouse_genomes_project 4 119004001 119139735 - MGP_C57BL6NJ_P0067478 Skint5 protein_coding protein_coding MGP_C57BL6NJ_T0067479.1 MGP_C57BL6NJ_G0029012.1 mouse_genomes_project 4 119082072 119139735 - Skint5 protein_coding retained_intron MGP_C57BL6NJ_T0066290.1 MGP_C57BL6NJ_G0028742.1 mouse_genomes_project 4 58788727 58801711 - MGP_C57BL6NJ_P0066290 Txn1 protein_coding protein_coding MGP_C57BL6NJ_T0067674.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122265859 122280237 - MGP_C57BL6NJ_P0067674 Toe1 protein_coding protein_coding MGP_C57BL6NJ_T0067675.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122276690 122280329 - MGP_C57BL6NJ_P0067675 Toe1 protein_coding protein_coding MGP_C57BL6NJ_T0067676.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122276700 122277881 - Toe1 protein_coding processed_transcript MGP_C57BL6NJ_T0067677.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122277362 122278294 - Toe1 protein_coding retained_intron MGP_C57BL6NJ_T0067678.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122277470 122279212 - MGP_C57BL6NJ_P0067678 Toe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067679.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122277964 122279289 - Toe1 protein_coding retained_intron MGP_C57BL6NJ_T0067680.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122278399 122280295 - Toe1 protein_coding processed_transcript MGP_C57BL6NJ_T0067681.1 MGP_C57BL6NJ_G0029058.1 mouse_genomes_project 4 122278505 122280237 - Toe1 protein_coding retained_intron MGP_C57BL6NJ_T0008178.1 MGP_C57BL6NJ_G0006672.1 mouse_genomes_project 4 144968187 144969304 - 2810405F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0066723.1 MGP_C57BL6NJ_G0028840.1 mouse_genomes_project 4 91635096 91681104 - MGP_C57BL6NJ_P0066723 Hacd4 protein_coding protein_coding MGP_C57BL6NJ_T0066726.1 MGP_C57BL6NJ_G0028840.1 mouse_genomes_project 4 91652547 91681117 - MGP_C57BL6NJ_P0066726 Hacd4 protein_coding protein_coding MGP_C57BL6NJ_T0066727.1 MGP_C57BL6NJ_G0028840.1 mouse_genomes_project 4 91655136 91681115 - MGP_C57BL6NJ_P0066727 Hacd4 protein_coding protein_coding MGP_C57BL6NJ_T0065959.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826808 44836148 + MGP_C57BL6NJ_P0065959 Grhpr protein_coding protein_coding MGP_C57BL6NJ_T0065960.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826816 44829357 + MGP_C57BL6NJ_P0065960 Grhpr protein_coding protein_coding MGP_C57BL6NJ_T0065961.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826845 44834424 + MGP_C57BL6NJ_P0065961 Grhpr protein_coding protein_coding MGP_C57BL6NJ_T0065962.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826846 44832741 + Grhpr protein_coding processed_transcript MGP_C57BL6NJ_T0065963.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826874 44832662 + MGP_C57BL6NJ_P0065963 Grhpr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065964.1 MGP_C57BL6NJ_G0028655.1 mouse_genomes_project 4 44826913 44831804 + Grhpr protein_coding processed_transcript MGP_C57BL6NJ_T0004758.1 MGP_C57BL6NJ_G0004121.1 mouse_genomes_project 4 158862906 158867772 + antisense antisense MGP_C57BL6NJ_T0015114.1 MGP_C57BL6NJ_G0013159.1 mouse_genomes_project 4 127029520 127030037 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065255.1 MGP_C57BL6NJ_G0028499.1 mouse_genomes_project 4 17754419 17781863 + MGP_C57BL6NJ_P0065255 Ggh protein_coding protein_coding MGP_C57BL6NJ_T0014876.1 MGP_C57BL6NJ_G0012921.1 mouse_genomes_project 4 43516476 43517836 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068109.1 MGP_C57BL6NJ_G0029163.1 mouse_genomes_project 4 129564585 129600659 - MGP_C57BL6NJ_P0068109 Bmp8a protein_coding protein_coding MGP_C57BL6NJ_T0069347.1 MGP_C57BL6NJ_G0029438.1 mouse_genomes_project 4 147148658 147174552 - MGP_C57BL6NJ_P0069347 Pqlc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069348.1 MGP_C57BL6NJ_G0029438.1 mouse_genomes_project 4 147153134 147174575 - MGP_C57BL6NJ_P0069348 Pqlc2 protein_coding protein_coding MGP_C57BL6NJ_T0069349.1 MGP_C57BL6NJ_G0029438.1 mouse_genomes_project 4 147153136 147174532 - MGP_C57BL6NJ_P0069349 Pqlc2 protein_coding protein_coding MGP_C57BL6NJ_T0069350.1 MGP_C57BL6NJ_G0029438.1 mouse_genomes_project 4 147153136 147174545 - MGP_C57BL6NJ_P0069350 Pqlc2 protein_coding protein_coding MGP_C57BL6NJ_T0069351.1 MGP_C57BL6NJ_G0029438.1 mouse_genomes_project 4 147155916 147174504 - MGP_C57BL6NJ_P0069351 Pqlc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014951.1 MGP_C57BL6NJ_G0012996.1 mouse_genomes_project 4 71542993 71544104 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068171.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271470 131272721 - protein_coding retained_intron MGP_C57BL6NJ_T0068172.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271875 131273200 - MGP_C57BL6NJ_P0068172 protein_coding protein_coding MGP_C57BL6NJ_T0068173.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271875 131273121 - MGP_C57BL6NJ_P0068173 protein_coding protein_coding MGP_C57BL6NJ_T0068174.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271876 131273052 - MGP_C57BL6NJ_P0068174 protein_coding protein_coding MGP_C57BL6NJ_T0068175.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271880 131273630 - MGP_C57BL6NJ_P0068175 protein_coding protein_coding MGP_C57BL6NJ_T0068176.1 MGP_C57BL6NJ_G0029179.1 mouse_genomes_project 4 131271936 131272864 - MGP_C57BL6NJ_P0068176 protein_coding protein_coding MGP_C57BL6NJ_T0068958.1 MGP_C57BL6NJ_G0029344.1 mouse_genomes_project 4 141517045 141520151 + MGP_C57BL6NJ_P0068958 Gm30191 protein_coding protein_coding MGP_C57BL6NJ_T0014738.1 MGP_C57BL6NJ_G0012783.1 mouse_genomes_project 4 2560961 2561933 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066362.1 MGP_C57BL6NJ_G0028760.1 mouse_genomes_project 4 60733294 60744794 - MGP_C57BL6NJ_P0066362 Inip protein_coding protein_coding MGP_C57BL6NJ_T0066363.1 MGP_C57BL6NJ_G0028760.1 mouse_genomes_project 4 60735018 60744754 - Inip protein_coding processed_transcript MGP_C57BL6NJ_T0066364.1 MGP_C57BL6NJ_G0028760.1 mouse_genomes_project 4 60741925 60744765 - Inip protein_coding processed_transcript MGP_C57BL6NJ_T0004724.1 MGP_C57BL6NJ_G0004096.1 mouse_genomes_project 4 147020914 147026165 - Gm16287 antisense antisense MGP_C57BL6NJ_T0069469.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149313522 149320436 + MGP_C57BL6NJ_P0069469 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069470.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149313673 149321514 + Arhgef19 protein_coding retained_intron MGP_C57BL6NJ_T0069471.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149316878 149320380 + MGP_C57BL6NJ_P0069471 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069472.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149316892 149331588 + MGP_C57BL6NJ_P0069472 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069473.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149316916 149321025 + MGP_C57BL6NJ_P0069473 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069474.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149319448 149321468 + MGP_C57BL6NJ_P0069474 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069475.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149320419 149322133 + MGP_C57BL6NJ_P0069475 Arhgef19 protein_coding protein_coding MGP_C57BL6NJ_T0069476.1 MGP_C57BL6NJ_G0029466.1 mouse_genomes_project 4 149320949 149322000 + Arhgef19 protein_coding retained_intron MGP_C57BL6NJ_T0008191.1 MGP_C57BL6NJ_G0006684.1 mouse_genomes_project 4 149355593 149356913 + Gm13056 lincRNA lincRNA MGP_C57BL6NJ_T0014883.1 MGP_C57BL6NJ_G0012928.1 mouse_genomes_project 4 46215899 46216879 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001559.1 MGP_C57BL6NJ_G0001459.1 mouse_genomes_project 4 144191705 144194192 + TEC TEC MGP_C57BL6NJ_T0068264.1 MGP_C57BL6NJ_G0029200.1 mouse_genomes_project 4 132820864 132835842 + MGP_C57BL6NJ_P0068264 Trappc3 protein_coding protein_coding MGP_C57BL6NJ_T0068265.1 MGP_C57BL6NJ_G0029200.1 mouse_genomes_project 4 132820939 132832139 + Trappc3 protein_coding processed_transcript MGP_C57BL6NJ_T0068085.1 MGP_C57BL6NJ_G0029156.1 mouse_genomes_project 4 129339309 129364198 + MGP_C57BL6NJ_P0068085 Bmp8b protein_coding protein_coding MGP_C57BL6NJ_T0068087.1 MGP_C57BL6NJ_G0029156.1 mouse_genomes_project 4 129357432 129370077 + Bmp8b protein_coding processed_transcript MGP_C57BL6NJ_T0065514.1 MGP_C57BL6NJ_G0028558.1 mouse_genomes_project 4 40061124 40088630 - MGP_C57BL6NJ_P0065514 Smu1 protein_coding protein_coding MGP_C57BL6NJ_T0065515.1 MGP_C57BL6NJ_G0028558.1 mouse_genomes_project 4 40069650 40088590 - Smu1 protein_coding processed_transcript MGP_C57BL6NJ_T0065516.1 MGP_C57BL6NJ_G0028558.1 mouse_genomes_project 4 40084300 40088538 - Smu1 protein_coding processed_transcript MGP_C57BL6NJ_T0065517.1 MGP_C57BL6NJ_G0028558.1 mouse_genomes_project 4 40085629 40088105 - Smu1 protein_coding processed_transcript MGP_C57BL6NJ_T0068475.1 MGP_C57BL6NJ_G0029250.1 mouse_genomes_project 4 136384441 136386846 + MGP_C57BL6NJ_P0068475 Marcksl1 protein_coding protein_coding MGP_C57BL6NJ_T0010837.1 MGP_C57BL6NJ_G0008922.1 mouse_genomes_project 4 64397005 64397087 + Mir455 miRNA miRNA MGP_C57BL6NJ_T0069587.1 MGP_C57BL6NJ_G0029499.1 mouse_genomes_project 4 151980829 151993456 + MGP_C57BL6NJ_P0069587 protein_coding protein_coding MGP_C57BL6NJ_T0100408.1 MGP_C57BL6NJ_G0038454.1 mouse_genomes_project 4 148959563 148959679 + Gm26226 snRNA snRNA MGP_C57BL6NJ_T0004769.1 MGP_C57BL6NJ_G0004132.1 mouse_genomes_project 4 164553562 164556568 + Gm13134 antisense antisense MGP_C57BL6NJ_T0004770.1 MGP_C57BL6NJ_G0004132.1 mouse_genomes_project 4 164553680 164555070 + Gm13134 antisense antisense MGP_C57BL6NJ_T0100404.1 MGP_C57BL6NJ_G0038450.1 mouse_genomes_project 4 143584384 143584487 + Gm26001 snRNA snRNA MGP_C57BL6NJ_T0015055.1 MGP_C57BL6NJ_G0013100.1 mouse_genomes_project 4 110626584 110628255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069782.1 MGP_C57BL6NJ_G0029563.1 mouse_genomes_project 4 158427994 158455838 + MGP_C57BL6NJ_P0069782 Dffa protein_coding protein_coding MGP_C57BL6NJ_T0069783.1 MGP_C57BL6NJ_G0029563.1 mouse_genomes_project 4 158427994 158453372 + MGP_C57BL6NJ_P0069783 Dffa protein_coding protein_coding MGP_C57BL6NJ_T0069784.1 MGP_C57BL6NJ_G0029563.1 mouse_genomes_project 4 158431617 158432083 + Dffa protein_coding processed_transcript MGP_C57BL6NJ_T0065349.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30579308 30638587 + MGP_C57BL6NJ_P0065349 Map3k7 protein_coding protein_coding MGP_C57BL6NJ_T0065350.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30579451 30638593 + MGP_C57BL6NJ_P0065350 Map3k7 protein_coding protein_coding MGP_C57BL6NJ_T0065351.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30592536 30603719 + Map3k7 protein_coding processed_transcript MGP_C57BL6NJ_T0065352.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30594686 30601497 + Map3k7 protein_coding processed_transcript MGP_C57BL6NJ_T0065353.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30596764 30607853 + Map3k7 protein_coding processed_transcript MGP_C57BL6NJ_T0065354.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30601442 30631090 + Map3k7 protein_coding processed_transcript MGP_C57BL6NJ_T0065355.1 MGP_C57BL6NJ_G0028519.1 mouse_genomes_project 4 30607550 30634680 + Map3k7 protein_coding processed_transcript MGP_C57BL6NJ_T0015008.1 MGP_C57BL6NJ_G0013053.1 mouse_genomes_project 4 93854977 93855729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007969.1 MGP_C57BL6NJ_G0006513.1 mouse_genomes_project 4 4364319 4378991 + 8430436N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0068198.1 MGP_C57BL6NJ_G0029186.1 mouse_genomes_project 4 131498336 131512675 - MGP_C57BL6NJ_P0068198 Dnali1 protein_coding protein_coding MGP_C57BL6NJ_T0014887.1 MGP_C57BL6NJ_G0012932.1 mouse_genomes_project 4 47101773 47102075 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010869.1 MGP_C57BL6NJ_G0008954.1 mouse_genomes_project 4 139189960 139190050 - Gm22033 miRNA miRNA MGP_C57BL6NJ_T0007992.1 MGP_C57BL6NJ_G0006531.1 mouse_genomes_project 4 21891769 21892222 - Gm28448 lincRNA lincRNA MGP_C57BL6NJ_T0099108.1 MGP_C57BL6NJ_G0037172.1 mouse_genomes_project 4 159261041 159261250 + n-R5s193 rRNA rRNA MGP_C57BL6NJ_T0068544.1 MGP_C57BL6NJ_G0029260.1 mouse_genomes_project 4 136527587 136557994 - MGP_C57BL6NJ_P0068544 Kpna6 protein_coding protein_coding MGP_C57BL6NJ_T0068545.1 MGP_C57BL6NJ_G0029260.1 mouse_genomes_project 4 136537136 136538416 - Kpna6 protein_coding retained_intron MGP_C57BL6NJ_T0068546.1 MGP_C57BL6NJ_G0029260.1 mouse_genomes_project 4 136537784 136540615 - Kpna6 protein_coding retained_intron MGP_C57BL6NJ_T0068547.1 MGP_C57BL6NJ_G0029260.1 mouse_genomes_project 4 136541335 136557842 - MGP_C57BL6NJ_P0068547 Kpna6 protein_coding protein_coding MGP_C57BL6NJ_T0068548.1 MGP_C57BL6NJ_G0029260.1 mouse_genomes_project 4 136546050 136558081 - Kpna6 protein_coding retained_intron MGP_C57BL6NJ_T0004648.1 MGP_C57BL6NJ_G0004036.1 mouse_genomes_project 4 103707949 103765045 - Gm12682 antisense antisense MGP_C57BL6NJ_T0103180.1 MGP_C57BL6NJ_G0040974.1 mouse_genomes_project 4 152678431 152678884 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100356.1 MGP_C57BL6NJ_G0038402.1 mouse_genomes_project 4 64798428 64798535 - Gm24234 snRNA snRNA MGP_C57BL6NJ_T0014952.1 MGP_C57BL6NJ_G0012997.1 mouse_genomes_project 4 71652403 71653451 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069030.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142466449 142524681 + MGP_C57BL6NJ_P0069030 Runx3 protein_coding protein_coding MGP_C57BL6NJ_T0069031.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142498254 142523058 + MGP_C57BL6NJ_P0069031 Runx3 protein_coding protein_coding MGP_C57BL6NJ_T0069032.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142499854 142502508 + Runx3 protein_coding retained_intron MGP_C57BL6NJ_T0069033.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142500076 142502270 + Runx3 protein_coding processed_transcript MGP_C57BL6NJ_T0069034.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142500421 142502325 + Runx3 protein_coding processed_transcript MGP_C57BL6NJ_T0069035.1 MGP_C57BL6NJ_G0029363.1 mouse_genomes_project 4 142501334 142502241 + Runx3 protein_coding processed_transcript MGP_C57BL6NJ_T0069906.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482641 160503444 - MGP_C57BL6NJ_P0069906 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069907.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482641 160498980 - MGP_C57BL6NJ_P0069907 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069908.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482653 160498680 - MGP_C57BL6NJ_P0069908 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069909.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482744 160497467 - MGP_C57BL6NJ_P0069909 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069910.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482747 160498705 - MGP_C57BL6NJ_P0069910 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069911.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160482892 160487344 - Park7 protein_coding processed_transcript MGP_C57BL6NJ_T0069912.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160486518 160498537 - MGP_C57BL6NJ_P0069912 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069913.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160489067 160498882 - Park7 protein_coding retained_intron MGP_C57BL6NJ_T0069914.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160494179 160498922 - MGP_C57BL6NJ_P0069914 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0069915.1 MGP_C57BL6NJ_G0029587.1 mouse_genomes_project 4 160494303 160503213 - MGP_C57BL6NJ_P0069915 Park7 protein_coding protein_coding MGP_C57BL6NJ_T0100335.1 MGP_C57BL6NJ_G0038381.1 mouse_genomes_project 4 24093299 24093405 + Gm24965 snRNA snRNA MGP_C57BL6NJ_T0010849.1 MGP_C57BL6NJ_G0008934.1 mouse_genomes_project 4 103702088 103702177 + Gm23366 miRNA miRNA MGP_C57BL6NJ_T0069718.1 MGP_C57BL6NJ_G0029553.1 mouse_genomes_project 4 157691895 157702194 - MGP_C57BL6NJ_P0069718 Ubiad1 protein_coding protein_coding MGP_C57BL6NJ_T0069719.1 MGP_C57BL6NJ_G0029553.1 mouse_genomes_project 4 157693889 157702184 - Ubiad1 protein_coding processed_transcript MGP_C57BL6NJ_T0103141.1 MGP_C57BL6NJ_G0040935.1 mouse_genomes_project 4 89675517 89684967 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004626.1 MGP_C57BL6NJ_G0004024.1 mouse_genomes_project 4 76317456 76318847 - A230083N12Rik antisense antisense MGP_C57BL6NJ_T0015126.1 MGP_C57BL6NJ_G0013171.1 mouse_genomes_project 4 129501952 129502811 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008210.1 MGP_C57BL6NJ_G0006703.1 mouse_genomes_project 4 165809764 165815957 + Gm26840 lincRNA lincRNA MGP_C57BL6NJ_T0014859.1 MGP_C57BL6NJ_G0012904.1 mouse_genomes_project 4 37100744 37102205 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069302.1 MGP_C57BL6NJ_G0029425.1 mouse_genomes_project 4 146510304 146531654 + MGP_C57BL6NJ_P0069302 Pla2g2c protein_coding protein_coding MGP_C57BL6NJ_T0069303.1 MGP_C57BL6NJ_G0029425.1 mouse_genomes_project 4 146510837 146529216 + MGP_C57BL6NJ_P0069303 Pla2g2c protein_coding protein_coding MGP_C57BL6NJ_T0069304.1 MGP_C57BL6NJ_G0029425.1 mouse_genomes_project 4 146510837 146530097 + MGP_C57BL6NJ_P0069304 Pla2g2c protein_coding protein_coding MGP_C57BL6NJ_T0065533.1 MGP_C57BL6NJ_G0028564.1 mouse_genomes_project 4 40385247 40403036 - MGP_C57BL6NJ_P0065533 Aqp7 protein_coding protein_coding MGP_C57BL6NJ_T0065534.1 MGP_C57BL6NJ_G0028564.1 mouse_genomes_project 4 40385247 40405727 - MGP_C57BL6NJ_P0065534 Aqp7 protein_coding protein_coding MGP_C57BL6NJ_T0065535.1 MGP_C57BL6NJ_G0028564.1 mouse_genomes_project 4 40387066 40393813 - Aqp7 protein_coding processed_transcript MGP_C57BL6NJ_T0065536.1 MGP_C57BL6NJ_G0028564.1 mouse_genomes_project 4 40387308 40388484 - Aqp7 protein_coding processed_transcript MGP_C57BL6NJ_T0004621.1 MGP_C57BL6NJ_G0004019.1 mouse_genomes_project 4 63148120 63150905 + Gm12909 antisense antisense MGP_C57BL6NJ_T0070317.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165876963 165878431 + MGP_C57BL6NJ_P0070317 Aurkaip1 protein_coding protein_coding MGP_C57BL6NJ_T0070318.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165877042 165878822 + MGP_C57BL6NJ_P0070318 Aurkaip1 protein_coding protein_coding MGP_C57BL6NJ_T0070319.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165877310 165878157 + Aurkaip1 protein_coding retained_intron MGP_C57BL6NJ_T0070320.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165877350 165878753 + MGP_C57BL6NJ_P0070320 Aurkaip1 protein_coding protein_coding MGP_C57BL6NJ_T0070321.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165877356 165878221 + Aurkaip1 protein_coding processed_transcript MGP_C57BL6NJ_T0070322.1 MGP_C57BL6NJ_G0029661.1 mouse_genomes_project 4 165877360 165878723 + MGP_C57BL6NJ_P0070322 Aurkaip1 protein_coding protein_coding MGP_C57BL6NJ_T0015200.1 MGP_C57BL6NJ_G0013245.1 mouse_genomes_project 4 154074272 154074676 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015184.1 MGP_C57BL6NJ_G0013229.1 mouse_genomes_project 4 152011632 152017231 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066480.1 MGP_C57BL6NJ_G0028795.1 mouse_genomes_project 4 65001738 65034197 - MGP_C57BL6NJ_P0066480 Tnfsf8 protein_coding protein_coding MGP_C57BL6NJ_T0014954.1 MGP_C57BL6NJ_G0012999.1 mouse_genomes_project 4 72988095 72988532 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014912.1 MGP_C57BL6NJ_G0012957.1 mouse_genomes_project 4 54225933 54226982 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065016.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595136 599766 + MGP_C57BL6NJ_P0065016 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065017.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595136 599761 + MGP_C57BL6NJ_P0065017 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065018.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595138 599710 + MGP_C57BL6NJ_P0065018 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065019.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595162 599759 + MGP_C57BL6NJ_P0065019 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065020.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595162 599766 + MGP_C57BL6NJ_P0065020 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065021.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595162 607270 + MGP_C57BL6NJ_P0065021 Chchd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065022.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595162 599288 + MGP_C57BL6NJ_P0065022 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065023.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595162 599766 + MGP_C57BL6NJ_P0065023 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065024.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595168 599742 + MGP_C57BL6NJ_P0065024 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065025.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595291 599644 + MGP_C57BL6NJ_P0065025 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065026.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595670 597657 + Chchd7 protein_coding retained_intron MGP_C57BL6NJ_T0065027.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 595748 599764 + MGP_C57BL6NJ_P0065027 Chchd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065028.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 597091 599763 + MGP_C57BL6NJ_P0065028 Chchd7 protein_coding protein_coding MGP_C57BL6NJ_T0065029.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 599651 606435 + Chchd7 protein_coding processed_transcript MGP_C57BL6NJ_T0065030.1 MGP_C57BL6NJ_G0028440.1 mouse_genomes_project 4 603045 606096 + Chchd7 protein_coding retained_intron MGP_C57BL6NJ_T0014973.1 MGP_C57BL6NJ_G0013018.1 mouse_genomes_project 4 78686618 78687557 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018515.1 MGP_C57BL6NJ_G0015940.1 mouse_genomes_project 4 53740199 53752351 - 4930412L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018516.1 MGP_C57BL6NJ_G0015940.1 mouse_genomes_project 4 53749620 53752647 - 4930412L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0004594.1 MGP_C57BL6NJ_G0003996.1 mouse_genomes_project 4 39566037 39567415 + antisense antisense MGP_C57BL6NJ_T0004584.1 MGP_C57BL6NJ_G0003988.1 mouse_genomes_project 4 12379911 12389299 + Gm11844 antisense antisense MGP_C57BL6NJ_T0065633.1 MGP_C57BL6NJ_G0028588.1 mouse_genomes_project 4 41237538 41238286 - MGP_C57BL6NJ_P0065633 Ccl27a protein_coding protein_coding MGP_C57BL6NJ_T0066110.1 MGP_C57BL6NJ_G0028691.1 mouse_genomes_project 4 48226490 48287292 + MGP_C57BL6NJ_P0066110 Stx17 protein_coding protein_coding MGP_C57BL6NJ_T0066111.1 MGP_C57BL6NJ_G0028691.1 mouse_genomes_project 4 48226498 48263343 + MGP_C57BL6NJ_P0066111 Stx17 protein_coding protein_coding MGP_C57BL6NJ_T0066112.1 MGP_C57BL6NJ_G0028691.1 mouse_genomes_project 4 48226501 48287888 + MGP_C57BL6NJ_P0066112 Stx17 protein_coding protein_coding MGP_C57BL6NJ_T0066113.1 MGP_C57BL6NJ_G0028691.1 mouse_genomes_project 4 48226510 48283612 + MGP_C57BL6NJ_P0066113 Stx17 protein_coding protein_coding MGP_C57BL6NJ_T0018536.1 MGP_C57BL6NJ_G0015954.1 mouse_genomes_project 4 101649375 101652555 - Gm12676 processed_transcript processed_transcript MGP_C57BL6NJ_T0015069.1 MGP_C57BL6NJ_G0013114.1 mouse_genomes_project 4 114105336 114107286 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008155.1 MGP_C57BL6NJ_G0006658.1 mouse_genomes_project 4 138604731 138620629 - Gm16080 lincRNA lincRNA MGP_C57BL6NJ_T0069161.1 MGP_C57BL6NJ_G0029391.1 mouse_genomes_project 4 144000779 144002507 + MGP_C57BL6NJ_P0069161 6030445D17Rik protein_coding protein_coding MGP_C57BL6NJ_T0008153.1 MGP_C57BL6NJ_G0006657.1 mouse_genomes_project 4 138556415 138581714 - Gm12962 lincRNA lincRNA MGP_C57BL6NJ_T0008154.1 MGP_C57BL6NJ_G0006657.1 mouse_genomes_project 4 138556743 138587970 - Gm12962 lincRNA lincRNA MGP_C57BL6NJ_T0101709.1 MGP_C57BL6NJ_G0039755.1 mouse_genomes_project 4 138099260 138099394 + Gm25261 snoRNA snoRNA MGP_C57BL6NJ_T0070372.1 MGP_C57BL6NJ_G0029671.1 mouse_genomes_project 4 166041038 166044222 - MGP_C57BL6NJ_P0070372 B3galt6 protein_coding protein_coding MGP_C57BL6NJ_T0008079.1 MGP_C57BL6NJ_G0006606.1 mouse_genomes_project 4 105418650 105419633 + Gm12801 lincRNA lincRNA MGP_C57BL6NJ_T0010903.1 MGP_C57BL6NJ_G0008988.1 mouse_genomes_project 4 166117013 166117083 - Mir200b miRNA miRNA MGP_C57BL6NJ_T0007983.1 MGP_C57BL6NJ_G0006523.1 mouse_genomes_project 4 11170761 11251909 - Gm11823 lincRNA lincRNA MGP_C57BL6NJ_T0007996.1 MGP_C57BL6NJ_G0006535.1 mouse_genomes_project 4 27482903 27483961 + Gm11916 lincRNA lincRNA MGP_C57BL6NJ_T0066337.1 MGP_C57BL6NJ_G0028755.1 mouse_genomes_project 4 60116487 60152831 + MGP_C57BL6NJ_P0066337 Ugcg protein_coding protein_coding MGP_C57BL6NJ_T0066338.1 MGP_C57BL6NJ_G0028755.1 mouse_genomes_project 4 60116788 60142226 + Ugcg protein_coding processed_transcript MGP_C57BL6NJ_T0066339.1 MGP_C57BL6NJ_G0028755.1 mouse_genomes_project 4 60141742 60143932 + Ugcg protein_coding processed_transcript MGP_C57BL6NJ_T0066340.1 MGP_C57BL6NJ_G0028755.1 mouse_genomes_project 4 60142678 60144316 + Ugcg protein_coding processed_transcript MGP_C57BL6NJ_T0008122.1 MGP_C57BL6NJ_G0006637.1 mouse_genomes_project 4 130967308 130974643 + 4933407E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0004681.1 MGP_C57BL6NJ_G0004062.1 mouse_genomes_project 4 124881634 124882344 - Gm12867 antisense antisense MGP_C57BL6NJ_T0066411.1 MGP_C57BL6NJ_G0028777.1 mouse_genomes_project 4 63609548 63621640 - Alad protein_coding processed_transcript MGP_C57BL6NJ_T0066412.1 MGP_C57BL6NJ_G0028777.1 mouse_genomes_project 4 63609548 63621677 - MGP_C57BL6NJ_P0066412 Alad protein_coding protein_coding MGP_C57BL6NJ_T0066413.1 MGP_C57BL6NJ_G0028777.1 mouse_genomes_project 4 63609548 63621653 - MGP_C57BL6NJ_P0066413 Alad protein_coding protein_coding MGP_C57BL6NJ_T0067856.1 MGP_C57BL6NJ_G0029090.1 mouse_genomes_project 4 124049537 124054129 + MGP_C57BL6NJ_P0067856 Elovl1 protein_coding protein_coding MGP_C57BL6NJ_T0067857.1 MGP_C57BL6NJ_G0029090.1 mouse_genomes_project 4 124049636 124050337 + Elovl1 protein_coding processed_transcript MGP_C57BL6NJ_T0067858.1 MGP_C57BL6NJ_G0029090.1 mouse_genomes_project 4 124049680 124053456 + Elovl1 protein_coding processed_transcript MGP_C57BL6NJ_T0067859.1 MGP_C57BL6NJ_G0029090.1 mouse_genomes_project 4 124049714 124052581 + Elovl1 protein_coding processed_transcript MGP_C57BL6NJ_T0015027.1 MGP_C57BL6NJ_G0013072.1 mouse_genomes_project 4 102063020 102063476 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069388.1 MGP_C57BL6NJ_G0029448.1 mouse_genomes_project 4 147887001 147896616 - MGP_C57BL6NJ_P0069388 Klhdc7a protein_coding protein_coding MGP_C57BL6NJ_T0008202.1 MGP_C57BL6NJ_G0006695.1 mouse_genomes_project 4 160211854 160224781 - Gm16079 lincRNA lincRNA MGP_C57BL6NJ_T0065482.1 MGP_C57BL6NJ_G0028551.1 mouse_genomes_project 4 39430558 39488543 + MGP_C57BL6NJ_P0065482 Aco1 protein_coding protein_coding MGP_C57BL6NJ_T0065483.1 MGP_C57BL6NJ_G0028551.1 mouse_genomes_project 4 39451212 39456854 + Aco1 protein_coding processed_transcript MGP_C57BL6NJ_T0065484.1 MGP_C57BL6NJ_G0028551.1 mouse_genomes_project 4 39454370 39464516 + Aco1 protein_coding processed_transcript MGP_C57BL6NJ_T0065485.1 MGP_C57BL6NJ_G0028551.1 mouse_genomes_project 4 39479179 39486609 + Aco1 protein_coding processed_transcript MGP_C57BL6NJ_T0069534.1 MGP_C57BL6NJ_G0029482.1 mouse_genomes_project 4 149897473 149932611 - MGP_C57BL6NJ_P0069534 Dnajc16 protein_coding protein_coding MGP_C57BL6NJ_T0069535.1 MGP_C57BL6NJ_G0029482.1 mouse_genomes_project 4 149908969 149913533 - Dnajc16 protein_coding processed_transcript MGP_C57BL6NJ_T0069536.1 MGP_C57BL6NJ_G0029482.1 mouse_genomes_project 4 149924788 149932651 - MGP_C57BL6NJ_P0069536 Dnajc16 protein_coding protein_coding MGP_C57BL6NJ_T0066369.1 MGP_C57BL6NJ_G0028762.1 mouse_genomes_project 4 60874199 60884130 - MGP_C57BL6NJ_P0066369 Slc46a2 protein_coding protein_coding MGP_C57BL6NJ_T0011831.1 MGP_C57BL6NJ_G0009916.1 mouse_genomes_project 4 72041984 72042290 - Gm26320 misc_RNA misc_RNA MGP_C57BL6NJ_T0100358.1 MGP_C57BL6NJ_G0038404.1 mouse_genomes_project 4 70678701 70678808 + Gm24697 snRNA snRNA MGP_C57BL6NJ_T0065272.1 MGP_C57BL6NJ_G0028503.1 mouse_genomes_project 4 19537655 19548300 - MGP_C57BL6NJ_P0065272 Tstd3 protein_coding protein_coding MGP_C57BL6NJ_T0008046.1 MGP_C57BL6NJ_G0006578.1 mouse_genomes_project 4 69788998 69798238 - Gm12911 lincRNA lincRNA MGP_C57BL6NJ_T0008014.1 MGP_C57BL6NJ_G0006552.1 mouse_genomes_project 4 47033984 47036450 - Gm568 lincRNA lincRNA MGP_C57BL6NJ_T0011817.1 MGP_C57BL6NJ_G0009902.1 mouse_genomes_project 4 16334298 16334584 + Gm25971 misc_RNA misc_RNA MGP_C57BL6NJ_T0014856.1 MGP_C57BL6NJ_G0012901.1 mouse_genomes_project 4 35437420 35438226 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008045.1 MGP_C57BL6NJ_G0006577.1 mouse_genomes_project 4 69493709 69609205 + lincRNA lincRNA MGP_C57BL6NJ_T0066479.1 MGP_C57BL6NJ_G0028794.1 mouse_genomes_project 4 64892886 64912587 - MGP_C57BL6NJ_P0066479 Tnfsf15 protein_coding protein_coding MGP_C57BL6NJ_T0066079.1 MGP_C57BL6NJ_G0028683.1 mouse_genomes_project 4 46659547 47017570 - MGP_C57BL6NJ_P0066079 Gabbr2 protein_coding protein_coding MGP_C57BL6NJ_T0066080.1 MGP_C57BL6NJ_G0028683.1 mouse_genomes_project 4 46661744 46692555 - Gabbr2 protein_coding processed_transcript MGP_C57BL6NJ_T0066081.1 MGP_C57BL6NJ_G0028683.1 mouse_genomes_project 4 46680011 46730158 - MGP_C57BL6NJ_P0066081 Gabbr2 protein_coding protein_coding MGP_C57BL6NJ_T0066082.1 MGP_C57BL6NJ_G0028683.1 mouse_genomes_project 4 46814217 46876760 - Gabbr2 protein_coding processed_transcript MGP_C57BL6NJ_T0014781.1 MGP_C57BL6NJ_G0012826.1 mouse_genomes_project 4 14522301 14523274 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008103.1 MGP_C57BL6NJ_G0006622.1 mouse_genomes_project 4 113301547 113306747 - Gm17354 lincRNA lincRNA MGP_C57BL6NJ_T0067887.1 MGP_C57BL6NJ_G0029101.1 mouse_genomes_project 4 124387227 124388175 + MGP_C57BL6NJ_P0067887 Olfr1340 protein_coding protein_coding MGP_C57BL6NJ_T0014855.1 MGP_C57BL6NJ_G0012900.1 mouse_genomes_project 4 34927211 34928153 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015125.1 MGP_C57BL6NJ_G0013170.1 mouse_genomes_project 4 128780449 128781546 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065264.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507120 19530849 + MGP_C57BL6NJ_P0065264 Ccnc protein_coding protein_coding MGP_C57BL6NJ_T0065265.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507145 19530849 + MGP_C57BL6NJ_P0065265 Ccnc protein_coding protein_coding MGP_C57BL6NJ_T0065266.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507145 19542009 + MGP_C57BL6NJ_P0065266 Ccnc protein_coding protein_coding MGP_C57BL6NJ_T0065267.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507160 19517313 + Ccnc protein_coding processed_transcript MGP_C57BL6NJ_T0065268.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507172 19526771 + Ccnc protein_coding processed_transcript MGP_C57BL6NJ_T0065269.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507174 19526771 + MGP_C57BL6NJ_P0065269 Ccnc protein_coding protein_coding MGP_C57BL6NJ_T0065270.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507177 19511374 + Ccnc protein_coding processed_transcript MGP_C57BL6NJ_T0065271.1 MGP_C57BL6NJ_G0028502.1 mouse_genomes_project 4 19507186 19527363 + Ccnc protein_coding processed_transcript MGP_C57BL6NJ_T0004723.1 MGP_C57BL6NJ_G0004095.1 mouse_genomes_project 4 146146117 146148634 + AB041806 antisense antisense MGP_C57BL6NJ_T0066729.1 MGP_C57BL6NJ_G0028842.1 mouse_genomes_project 4 91805757 91806330 - MGP_C57BL6NJ_P0066729 Ifna15 protein_coding protein_coding MGP_C57BL6NJ_T0065965.1 MGP_C57BL6NJ_G0028656.1 mouse_genomes_project 4 44836655 44862813 - MGP_C57BL6NJ_P0065965 Zbtb5 protein_coding protein_coding MGP_C57BL6NJ_T0065966.1 MGP_C57BL6NJ_G0028656.1 mouse_genomes_project 4 44836658 44862831 - MGP_C57BL6NJ_P0065966 Zbtb5 protein_coding protein_coding MGP_C57BL6NJ_T0065967.1 MGP_C57BL6NJ_G0028656.1 mouse_genomes_project 4 44839856 44862831 - MGP_C57BL6NJ_P0065967 Zbtb5 protein_coding protein_coding MGP_C57BL6NJ_T0065968.1 MGP_C57BL6NJ_G0028656.1 mouse_genomes_project 4 44841682 44862564 - MGP_C57BL6NJ_P0065968 Zbtb5 protein_coding protein_coding MGP_C57BL6NJ_T0014858.1 MGP_C57BL6NJ_G0012903.1 mouse_genomes_project 4 37005971 37015824 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067302.1 MGP_C57BL6NJ_G0028979.1 mouse_genomes_project 4 113247514 113263118 + Orc1 protein_coding processed_transcript MGP_C57BL6NJ_T0067303.1 MGP_C57BL6NJ_G0028979.1 mouse_genomes_project 4 113247525 113263259 + Orc1 protein_coding processed_transcript MGP_C57BL6NJ_T0067304.1 MGP_C57BL6NJ_G0028979.1 mouse_genomes_project 4 113247545 113282533 + MGP_C57BL6NJ_P0067304 Orc1 protein_coding protein_coding MGP_C57BL6NJ_T0067305.1 MGP_C57BL6NJ_G0028979.1 mouse_genomes_project 4 113254125 113254884 + Orc1 protein_coding processed_transcript MGP_C57BL6NJ_T0067306.1 MGP_C57BL6NJ_G0028979.1 mouse_genomes_project 4 113271554 113273507 + Orc1 protein_coding processed_transcript MGP_C57BL6NJ_T0069964.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161701785 161709673 - MGP_C57BL6NJ_P0069964 Zbtb48 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069965.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161701785 161709673 - MGP_C57BL6NJ_P0069965 Zbtb48 protein_coding protein_coding MGP_C57BL6NJ_T0069966.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161701787 161709683 - Zbtb48 protein_coding retained_intron MGP_C57BL6NJ_T0069967.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161701811 161702628 - Zbtb48 protein_coding processed_transcript MGP_C57BL6NJ_T0069968.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161703120 161704118 - Zbtb48 protein_coding processed_transcript MGP_C57BL6NJ_T0069969.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161703603 161708456 - MGP_C57BL6NJ_P0069969 Zbtb48 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069970.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161704497 161708059 - Zbtb48 protein_coding retained_intron MGP_C57BL6NJ_T0069971.1 MGP_C57BL6NJ_G0029598.1 mouse_genomes_project 4 161708489 161709649 - MGP_C57BL6NJ_P0069971 Zbtb48 protein_coding protein_coding MGP_C57BL6NJ_T0101700.1 MGP_C57BL6NJ_G0039746.1 mouse_genomes_project 4 127439987 127440119 + Gm26162 snoRNA snoRNA MGP_C57BL6NJ_T0101666.1 MGP_C57BL6NJ_G0039712.1 mouse_genomes_project 4 57500483 57500603 - Gm22952 snoRNA snoRNA MGP_C57BL6NJ_T0068392.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135736402 135768196 - MGP_C57BL6NJ_P0068392 Azin2 protein_coding protein_coding MGP_C57BL6NJ_T0068393.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135738190 135768204 - MGP_C57BL6NJ_P0068393 Azin2 protein_coding protein_coding MGP_C57BL6NJ_T0068394.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135738190 135768215 - MGP_C57BL6NJ_P0068394 Azin2 protein_coding protein_coding MGP_C57BL6NJ_T0068395.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135751649 135768215 - Azin2 protein_coding retained_intron MGP_C57BL6NJ_T0068396.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135752091 135767174 - MGP_C57BL6NJ_P0068396 Azin2 protein_coding protein_coding MGP_C57BL6NJ_T0068397.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135753189 135768218 - Azin2 protein_coding retained_intron MGP_C57BL6NJ_T0068398.1 MGP_C57BL6NJ_G0029233.1 mouse_genomes_project 4 135766480 135768204 - Azin2 protein_coding retained_intron MGP_C57BL6NJ_T0066291.1 MGP_C57BL6NJ_G0028743.1 mouse_genomes_project 4 58827650 58856375 - Txndc8 protein_coding processed_transcript MGP_C57BL6NJ_T0066292.1 MGP_C57BL6NJ_G0028743.1 mouse_genomes_project 4 58827650 58856474 - MGP_C57BL6NJ_P0066292 Txndc8 protein_coding protein_coding MGP_C57BL6NJ_T0066293.1 MGP_C57BL6NJ_G0028743.1 mouse_genomes_project 4 58827652 58844796 - MGP_C57BL6NJ_P0066293 Txndc8 protein_coding protein_coding MGP_C57BL6NJ_T0067744.1 MGP_C57BL6NJ_G0029071.1 mouse_genomes_project 4 122742470 122783801 - MGP_C57BL6NJ_P0067744 Gm1661 protein_coding protein_coding MGP_C57BL6NJ_T0067745.1 MGP_C57BL6NJ_G0029071.1 mouse_genomes_project 4 122744451 122783801 - MGP_C57BL6NJ_P0067745 Gm1661 protein_coding protein_coding MGP_C57BL6NJ_T0067746.1 MGP_C57BL6NJ_G0029071.1 mouse_genomes_project 4 122774167 122784009 - Gm1661 protein_coding processed_transcript MGP_C57BL6NJ_T0014737.1 MGP_C57BL6NJ_G0012782.1 mouse_genomes_project 4 2295137 2295609 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015110.1 MGP_C57BL6NJ_G0013155.1 mouse_genomes_project 4 125302977 125303934 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008067.1 MGP_C57BL6NJ_G0006595.1 mouse_genomes_project 4 95423634 95424733 - 4930577H14Rik lincRNA lincRNA MGP_C57BL6NJ_T0010877.1 MGP_C57BL6NJ_G0008962.1 mouse_genomes_project 4 142786525 142786604 - Mir700 miRNA miRNA MGP_C57BL6NJ_T0001542.1 MGP_C57BL6NJ_G0001442.1 mouse_genomes_project 4 5318497 5327780 - TEC TEC MGP_C57BL6NJ_T0066518.1 MGP_C57BL6NJ_G0028806.1 mouse_genomes_project 4 74653712 74655764 - MGP_C57BL6NJ_P0066518 Aldoart1 protein_coding protein_coding MGP_C57BL6NJ_T0066519.1 MGP_C57BL6NJ_G0028806.1 mouse_genomes_project 4 74653712 74655762 - MGP_C57BL6NJ_P0066519 Aldoart1 protein_coding protein_coding MGP_C57BL6NJ_T0065660.1 MGP_C57BL6NJ_G0028603.1 mouse_genomes_project 4 42290709 42383467 - MGP_C57BL6NJ_P0065660 protein_coding protein_coding MGP_C57BL6NJ_T0014910.1 MGP_C57BL6NJ_G0012955.1 mouse_genomes_project 4 53423621 53425680 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018489.1 MGP_C57BL6NJ_G0015925.1 mouse_genomes_project 4 6734555 6788614 + 4930412C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018490.1 MGP_C57BL6NJ_G0015925.1 mouse_genomes_project 4 6734555 6787154 + 4930412C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018491.1 MGP_C57BL6NJ_G0015925.1 mouse_genomes_project 4 6734621 6740895 + 4930412C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018492.1 MGP_C57BL6NJ_G0015925.1 mouse_genomes_project 4 6734649 6746700 + 4930412C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018493.1 MGP_C57BL6NJ_G0015925.1 mouse_genomes_project 4 6734767 6785489 + 4930412C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011822.1 MGP_C57BL6NJ_G0009907.1 mouse_genomes_project 4 33500365 33500672 + Gm22849 misc_RNA misc_RNA MGP_C57BL6NJ_T0099225.1 MGP_C57BL6NJ_G0037289.1 mouse_genomes_project 4 43171938 43172209 - Rmrp ribozyme ribozyme MGP_C57BL6NJ_T0015108.1 MGP_C57BL6NJ_G0013153.1 mouse_genomes_project 4 125282830 125283512 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067533.1 MGP_C57BL6NJ_G0029031.1 mouse_genomes_project 4 121153890 121168083 + MGP_C57BL6NJ_P0067533 Atpaf1 protein_coding protein_coding MGP_C57BL6NJ_T0067534.1 MGP_C57BL6NJ_G0029031.1 mouse_genomes_project 4 121153892 121180019 + MGP_C57BL6NJ_P0067534 Atpaf1 protein_coding protein_coding MGP_C57BL6NJ_T0067535.1 MGP_C57BL6NJ_G0029031.1 mouse_genomes_project 4 121154057 121174953 + MGP_C57BL6NJ_P0067535 Atpaf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067536.1 MGP_C57BL6NJ_G0029031.1 mouse_genomes_project 4 121156821 121180009 + MGP_C57BL6NJ_P0067536 Atpaf1 protein_coding protein_coding MGP_C57BL6NJ_T0065643.1 MGP_C57BL6NJ_G0028595.1 mouse_genomes_project 4 41834385 41835037 + MGP_C57BL6NJ_P0065643 protein_coding protein_coding MGP_C57BL6NJ_T0068641.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137760475 137789260 + MGP_C57BL6NJ_P0068641 Laptm5 protein_coding protein_coding MGP_C57BL6NJ_T0068642.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137766416 137781722 + MGP_C57BL6NJ_P0068642 Laptm5 protein_coding protein_coding MGP_C57BL6NJ_T0068643.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137766422 137778099 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0068644.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137766428 137781725 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0068645.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137766429 137779398 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0068646.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137766466 137786929 + MGP_C57BL6NJ_P0068646 Laptm5 protein_coding protein_coding MGP_C57BL6NJ_T0068647.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137768576 137781743 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0068648.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137768774 137779885 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0068649.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137769057 137788341 + MGP_C57BL6NJ_P0068649 Laptm5 protein_coding protein_coding MGP_C57BL6NJ_T0068650.1 MGP_C57BL6NJ_G0029279.1 mouse_genomes_project 4 137785060 137787213 + Laptm5 protein_coding processed_transcript MGP_C57BL6NJ_T0066844.1 MGP_C57BL6NJ_G0028884.1 mouse_genomes_project 4 100300617 100337792 - MGP_C57BL6NJ_P0066844 Cyp2j6 protein_coding protein_coding MGP_C57BL6NJ_T0068018.1 MGP_C57BL6NJ_G0029134.1 mouse_genomes_project 4 126394694 126427722 - MGP_C57BL6NJ_P0068018 Ctps protein_coding protein_coding MGP_C57BL6NJ_T0068019.1 MGP_C57BL6NJ_G0029134.1 mouse_genomes_project 4 126396737 126399916 - Ctps protein_coding processed_transcript MGP_C57BL6NJ_T0068020.1 MGP_C57BL6NJ_G0029134.1 mouse_genomes_project 4 126396795 126402950 - Ctps protein_coding processed_transcript MGP_C57BL6NJ_T0100391.1 MGP_C57BL6NJ_G0038437.1 mouse_genomes_project 4 131109758 131109861 - Gm24480 snRNA snRNA MGP_C57BL6NJ_T0014893.1 MGP_C57BL6NJ_G0012938.1 mouse_genomes_project 4 49517976 49518307 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065301.1 MGP_C57BL6NJ_G0028508.1 mouse_genomes_project 4 20184487 20202982 + Fbxl4 protein_coding processed_transcript MGP_C57BL6NJ_T0065302.1 MGP_C57BL6NJ_G0028508.1 mouse_genomes_project 4 20184487 20259345 + MGP_C57BL6NJ_P0065302 Fbxl4 protein_coding protein_coding MGP_C57BL6NJ_T0065303.1 MGP_C57BL6NJ_G0028508.1 mouse_genomes_project 4 20184504 20259318 + MGP_C57BL6NJ_P0065303 Fbxl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065304.1 MGP_C57BL6NJ_G0028508.1 mouse_genomes_project 4 20184515 20259342 + MGP_C57BL6NJ_P0065304 Fbxl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065305.1 MGP_C57BL6NJ_G0028508.1 mouse_genomes_project 4 20184560 20259329 + MGP_C57BL6NJ_P0065305 Fbxl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065035.1 MGP_C57BL6NJ_G0028443.1 mouse_genomes_project 4 799383 804346 - MGP_C57BL6NJ_P0065035 Penk protein_coding protein_coding MGP_C57BL6NJ_T0065036.1 MGP_C57BL6NJ_G0028443.1 mouse_genomes_project 4 799384 804688 - MGP_C57BL6NJ_P0065036 Penk protein_coding protein_coding MGP_C57BL6NJ_T0065011.1 MGP_C57BL6NJ_G0028438.1 mouse_genomes_project 4 511882 513331 - MGP_C57BL6NJ_P0065011 Mos protein_coding protein_coding MGP_C57BL6NJ_T0008039.1 MGP_C57BL6NJ_G0006571.1 mouse_genomes_project 4 63831029 63844364 + lincRNA lincRNA MGP_C57BL6NJ_T0068785.1 MGP_C57BL6NJ_G0029307.1 mouse_genomes_project 4 139963645 139987880 - MGP_C57BL6NJ_P0068785 Fam76a protein_coding protein_coding MGP_C57BL6NJ_T0068786.1 MGP_C57BL6NJ_G0029307.1 mouse_genomes_project 4 139965864 139987815 - MGP_C57BL6NJ_P0068786 Fam76a protein_coding protein_coding MGP_C57BL6NJ_T0068787.1 MGP_C57BL6NJ_G0029307.1 mouse_genomes_project 4 139979160 139986262 - MGP_C57BL6NJ_P0068787 Fam76a protein_coding protein_coding MGP_C57BL6NJ_T0010840.1 MGP_C57BL6NJ_G0008925.1 mouse_genomes_project 4 83682055 83682151 + Gm27452 miRNA miRNA MGP_C57BL6NJ_T0066452.1 MGP_C57BL6NJ_G0028788.1 mouse_genomes_project 4 64512323 64550242 - MGP_C57BL6NJ_P0066452 Akna protein_coding protein_coding MGP_C57BL6NJ_T0066453.1 MGP_C57BL6NJ_G0028788.1 mouse_genomes_project 4 64525122 64526402 - Akna protein_coding processed_transcript MGP_C57BL6NJ_T0066395.1 MGP_C57BL6NJ_G0028773.1 mouse_genomes_project 4 63517068 63524770 - MGP_C57BL6NJ_P0066395 Rnf183 protein_coding protein_coding MGP_C57BL6NJ_T0066396.1 MGP_C57BL6NJ_G0028773.1 mouse_genomes_project 4 63517070 63524244 - MGP_C57BL6NJ_P0066396 Rnf183 protein_coding protein_coding MGP_C57BL6NJ_T0066397.1 MGP_C57BL6NJ_G0028773.1 mouse_genomes_project 4 63517515 63518088 - MGP_C57BL6NJ_P0066397 Rnf183 protein_coding protein_coding MGP_C57BL6NJ_T0066839.1 MGP_C57BL6NJ_G0028880.1 mouse_genomes_project 4 99849895 99892290 - MGP_C57BL6NJ_P0066839 Cyp2j12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066840.1 MGP_C57BL6NJ_G0028880.1 mouse_genomes_project 4 99850150 99892276 - MGP_C57BL6NJ_P0066840 Cyp2j12 protein_coding protein_coding MGP_C57BL6NJ_T0014744.1 MGP_C57BL6NJ_G0012789.1 mouse_genomes_project 4 5025960 5026420 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103165.1 MGP_C57BL6NJ_G0040959.1 mouse_genomes_project 4 128709456 128726367 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0068738.1 MGP_C57BL6NJ_G0029296.1 mouse_genomes_project 4 139518076 139540333 - MGP_C57BL6NJ_P0068738 Sesn2 protein_coding protein_coding MGP_C57BL6NJ_T0099449.1 MGP_C57BL6NJ_G0037506.1 mouse_genomes_project 4 113181838 113184875 + Gm12737 sense_intronic sense_intronic MGP_C57BL6NJ_T0015039.1 MGP_C57BL6NJ_G0013084.1 mouse_genomes_project 4 104447069 104447767 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068022.1 MGP_C57BL6NJ_G0029136.1 mouse_genomes_project 4 126543844 126545093 + MGP_C57BL6NJ_P0068022 Cited4 protein_coding protein_coding MGP_C57BL6NJ_T0070285.1 MGP_C57BL6NJ_G0029652.1 mouse_genomes_project 4 165722413 165724553 + MGP_C57BL6NJ_P0070285 Fndc10 protein_coding protein_coding MGP_C57BL6NJ_T0065979.1 MGP_C57BL6NJ_G0028659.1 mouse_genomes_project 4 44956837 44959748 - MGP_C57BL6NJ_P0065979 protein_coding protein_coding MGP_C57BL6NJ_T0065980.1 MGP_C57BL6NJ_G0028659.1 mouse_genomes_project 4 44956841 44959742 - MGP_C57BL6NJ_P0065980 protein_coding protein_coding MGP_C57BL6NJ_T0065981.1 MGP_C57BL6NJ_G0028659.1 mouse_genomes_project 4 44956841 44959672 - MGP_C57BL6NJ_P0065981 protein_coding protein_coding MGP_C57BL6NJ_T0065982.1 MGP_C57BL6NJ_G0028659.1 mouse_genomes_project 4 44957024 44959742 - MGP_C57BL6NJ_P0065982 protein_coding protein_coding MGP_C57BL6NJ_T0101720.1 MGP_C57BL6NJ_G0039766.1 mouse_genomes_project 4 163764904 163765036 + Gm25880 snoRNA snoRNA MGP_C57BL6NJ_T0065525.1 MGP_C57BL6NJ_G0028562.1 mouse_genomes_project 4 40292033 40308869 + MGP_C57BL6NJ_P0065525 Chmp5 protein_coding protein_coding MGP_C57BL6NJ_T0066160.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849673 49856370 + MGP_C57BL6NJ_P0066160 Rnf20 protein_coding protein_coding MGP_C57BL6NJ_T0066161.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849727 49874545 + MGP_C57BL6NJ_P0066161 Rnf20 protein_coding protein_coding MGP_C57BL6NJ_T0066162.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849727 49867903 + MGP_C57BL6NJ_P0066162 Rnf20 protein_coding protein_coding MGP_C57BL6NJ_T0066163.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849733 49874546 + MGP_C57BL6NJ_P0066163 Rnf20 protein_coding protein_coding MGP_C57BL6NJ_T0066164.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849760 49862191 + MGP_C57BL6NJ_P0066164 Rnf20 protein_coding protein_coding MGP_C57BL6NJ_T0066165.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849804 49857681 + Rnf20 protein_coding processed_transcript MGP_C57BL6NJ_T0066166.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49849826 49860627 + Rnf20 protein_coding processed_transcript MGP_C57BL6NJ_T0066167.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49859385 49866091 + Rnf20 protein_coding processed_transcript MGP_C57BL6NJ_T0066168.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49867914 49870478 + Rnf20 protein_coding processed_transcript MGP_C57BL6NJ_T0066169.1 MGP_C57BL6NJ_G0028706.1 mouse_genomes_project 4 49868619 49870202 + Rnf20 protein_coding processed_transcript MGP_C57BL6NJ_T0065790.1 MGP_C57BL6NJ_G0028624.1 mouse_genomes_project 4 43160241 43161895 - MGP_C57BL6NJ_P0065790 Sit1 protein_coding protein_coding MGP_C57BL6NJ_T0065791.1 MGP_C57BL6NJ_G0028624.1 mouse_genomes_project 4 43160347 43161383 - Sit1 protein_coding processed_transcript MGP_C57BL6NJ_T0070192.1 MGP_C57BL6NJ_G0029637.1 mouse_genomes_project 4 165059912 165073448 - Rer1 protein_coding processed_transcript MGP_C57BL6NJ_T0070193.1 MGP_C57BL6NJ_G0029637.1 mouse_genomes_project 4 165059912 165073450 - MGP_C57BL6NJ_P0070193 Rer1 protein_coding protein_coding MGP_C57BL6NJ_T0070194.1 MGP_C57BL6NJ_G0029637.1 mouse_genomes_project 4 165069764 165073459 - Rer1 protein_coding processed_transcript MGP_C57BL6NJ_T0068710.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139306620 139325062 - MGP_C57BL6NJ_P0068710 Trnau1ap protein_coding protein_coding MGP_C57BL6NJ_T0068711.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139306620 139325111 - MGP_C57BL6NJ_P0068711 Trnau1ap protein_coding protein_coding MGP_C57BL6NJ_T0068712.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139306622 139325089 - Trnau1ap protein_coding retained_intron MGP_C57BL6NJ_T0068713.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139306706 139325067 - Trnau1ap protein_coding processed_transcript MGP_C57BL6NJ_T0068714.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139306722 139324962 - MGP_C57BL6NJ_P0068714 Trnau1ap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068715.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139309064 139324987 - MGP_C57BL6NJ_P0068715 Trnau1ap protein_coding protein_coding MGP_C57BL6NJ_T0068716.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139309170 139325077 - MGP_C57BL6NJ_P0068716 Trnau1ap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068717.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139309207 139325055 - Trnau1ap protein_coding processed_transcript MGP_C57BL6NJ_T0068718.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139309210 139325111 - MGP_C57BL6NJ_P0068718 Trnau1ap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068719.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139316749 139320849 - Trnau1ap protein_coding retained_intron MGP_C57BL6NJ_T0068720.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139317227 139325111 - MGP_C57BL6NJ_P0068720 Trnau1ap protein_coding protein_coding MGP_C57BL6NJ_T0068721.1 MGP_C57BL6NJ_G0029292.1 mouse_genomes_project 4 139323681 139325088 - Trnau1ap protein_coding retained_intron MGP_C57BL6NJ_T0008194.1 MGP_C57BL6NJ_G0006687.1 mouse_genomes_project 4 150497913 150539008 - Gm13052 lincRNA lincRNA MGP_C57BL6NJ_T0008118.1 MGP_C57BL6NJ_G0006636.1 mouse_genomes_project 4 130779769 130829534 - 1700057H15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008119.1 MGP_C57BL6NJ_G0006636.1 mouse_genomes_project 4 130779769 130786023 - 1700057H15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008120.1 MGP_C57BL6NJ_G0006636.1 mouse_genomes_project 4 130828140 130882007 - 1700057H15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008121.1 MGP_C57BL6NJ_G0006636.1 mouse_genomes_project 4 130828473 130829524 - 1700057H15Rik lincRNA lincRNA MGP_C57BL6NJ_T0102249.1 MGP_C57BL6NJ_G0040241.1 mouse_genomes_project 4 6889228 6890661 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102250.1 MGP_C57BL6NJ_G0040241.1 mouse_genomes_project 4 6889901 6890899 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0014975.1 MGP_C57BL6NJ_G0013020.1 mouse_genomes_project 4 79117520 79117914 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070127.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164207607 164211621 - Arhgef16 protein_coding retained_intron MGP_C57BL6NJ_T0070128.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164207607 164232423 - Arhgef16 protein_coding retained_intron MGP_C57BL6NJ_T0070129.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164207607 164232585 - MGP_C57BL6NJ_P0070129 Arhgef16 protein_coding protein_coding MGP_C57BL6NJ_T0070130.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164207875 164234194 - MGP_C57BL6NJ_P0070130 Arhgef16 protein_coding protein_coding MGP_C57BL6NJ_T0070131.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164217676 164232423 - MGP_C57BL6NJ_P0070131 Arhgef16 protein_coding protein_coding MGP_C57BL6NJ_T0070132.1 MGP_C57BL6NJ_G0029625.1 mouse_genomes_project 4 164221638 164234207 - MGP_C57BL6NJ_P0070132 Arhgef16 protein_coding protein_coding MGP_C57BL6NJ_T0070259.1 MGP_C57BL6NJ_G0029647.1 mouse_genomes_project 4 165628464 165653311 + MGP_C57BL6NJ_P0070259 Slc35e2 protein_coding protein_coding MGP_C57BL6NJ_T0070260.1 MGP_C57BL6NJ_G0029647.1 mouse_genomes_project 4 165628659 165647871 + MGP_C57BL6NJ_P0070260 Slc35e2 protein_coding protein_coding MGP_C57BL6NJ_T0070261.1 MGP_C57BL6NJ_G0029647.1 mouse_genomes_project 4 165628990 165647100 + MGP_C57BL6NJ_P0070261 Slc35e2 protein_coding protein_coding MGP_C57BL6NJ_T0070262.1 MGP_C57BL6NJ_G0029647.1 mouse_genomes_project 4 165637220 165646977 + Slc35e2 protein_coding processed_transcript MGP_C57BL6NJ_T0065464.1 MGP_C57BL6NJ_G0028547.1 mouse_genomes_project 4 34024321 34026271 + MGP_C57BL6NJ_P0065464 Ifnk protein_coding protein_coding MGP_C57BL6NJ_T0066629.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87195763 87603936 - MGP_C57BL6NJ_P0066629 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066630.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87195897 87603969 - MGP_C57BL6NJ_P0066630 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066631.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87196020 87604177 - MGP_C57BL6NJ_P0066631 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066632.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87196048 87212434 - MGP_C57BL6NJ_P0066632 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066633.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87196278 87603988 - MGP_C57BL6NJ_P0066633 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066634.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87196827 87212607 - MGP_C57BL6NJ_P0066634 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066635.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87196913 87212823 - MGP_C57BL6NJ_P0066635 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066636.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87197112 87212545 - MGP_C57BL6NJ_P0066636 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066637.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87197112 87212545 - MGP_C57BL6NJ_P0066637 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066638.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87213890 87603898 - MGP_C57BL6NJ_P0066638 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066639.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87213890 87603898 - MGP_C57BL6NJ_P0066639 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066640.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87213914 87433386 - Bnc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066641.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87214253 87603929 - MGP_C57BL6NJ_P0066641 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066642.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87214280 87603899 - MGP_C57BL6NJ_P0066642 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066643.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87214311 87460463 - Bnc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066644.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87311285 87603901 - Bnc2 protein_coding retained_intron MGP_C57BL6NJ_T0066645.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87313529 87603899 - MGP_C57BL6NJ_P0066645 Bnc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066646.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87313561 87473685 - Bnc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066647.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87313654 87603980 - MGP_C57BL6NJ_P0066647 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066648.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87333791 87473356 - MGP_C57BL6NJ_P0066648 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066649.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87333816 87449830 - Bnc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066650.1 MGP_C57BL6NJ_G0028826.1 mouse_genomes_project 4 87473277 87603901 - MGP_C57BL6NJ_P0066650 Bnc2 protein_coding protein_coding MGP_C57BL6NJ_T0066671.1 MGP_C57BL6NJ_G0028830.1 mouse_genomes_project 4 89475205 89569710 - Saxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0066672.1 MGP_C57BL6NJ_G0028830.1 mouse_genomes_project 4 89475205 89588956 - MGP_C57BL6NJ_P0066672 Saxo1 protein_coding protein_coding MGP_C57BL6NJ_T0066673.1 MGP_C57BL6NJ_G0028830.1 mouse_genomes_project 4 89505614 89588648 - Saxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0066674.1 MGP_C57BL6NJ_G0028830.1 mouse_genomes_project 4 89508155 89588981 - Saxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0015194.1 MGP_C57BL6NJ_G0013239.1 mouse_genomes_project 4 153782679 153783315 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015089.1 MGP_C57BL6NJ_G0013134.1 mouse_genomes_project 4 121069339 121070380 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100407.1 MGP_C57BL6NJ_G0038453.1 mouse_genomes_project 4 146638872 146638973 - Gm25280 snRNA snRNA MGP_C57BL6NJ_T0015209.1 MGP_C57BL6NJ_G0013254.1 mouse_genomes_project 4 156928870 156929607 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014960.1 MGP_C57BL6NJ_G0013005.1 mouse_genomes_project 4 75294116 75295291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069352.1 MGP_C57BL6NJ_G0029439.1 mouse_genomes_project 4 147167248 147180006 + MGP_C57BL6NJ_P0069352 Akr7a5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069353.1 MGP_C57BL6NJ_G0029439.1 mouse_genomes_project 4 147178178 147179007 + Akr7a5 protein_coding processed_transcript MGP_C57BL6NJ_T0001550.1 MGP_C57BL6NJ_G0001450.1 mouse_genomes_project 4 103372070 103381717 - TEC TEC MGP_C57BL6NJ_T0069004.1 MGP_C57BL6NJ_G0029356.1 mouse_genomes_project 4 141865044 142015046 - MGP_C57BL6NJ_P0069004 Man1c1 protein_coding protein_coding MGP_C57BL6NJ_T0069005.1 MGP_C57BL6NJ_G0029356.1 mouse_genomes_project 4 141865044 142015046 - MGP_C57BL6NJ_P0069005 Man1c1 protein_coding protein_coding MGP_C57BL6NJ_T0069006.1 MGP_C57BL6NJ_G0029356.1 mouse_genomes_project 4 141871243 142014523 - Man1c1 protein_coding retained_intron MGP_C57BL6NJ_T0014935.1 MGP_C57BL6NJ_G0012980.1 mouse_genomes_project 4 60307240 60307804 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067319.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113493517 113515506 - MGP_C57BL6NJ_P0067319 Btf3l4 protein_coding protein_coding MGP_C57BL6NJ_T0067320.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113495940 113515456 - MGP_C57BL6NJ_P0067320 Btf3l4 protein_coding protein_coding MGP_C57BL6NJ_T0067321.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113496013 113515446 - MGP_C57BL6NJ_P0067321 Btf3l4 protein_coding protein_coding MGP_C57BL6NJ_T0067322.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113496054 113513823 - MGP_C57BL6NJ_P0067322 Btf3l4 protein_coding protein_coding MGP_C57BL6NJ_T0067323.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113498249 113508149 - Btf3l4 protein_coding processed_transcript MGP_C57BL6NJ_T0067324.1 MGP_C57BL6NJ_G0028983.1 mouse_genomes_project 4 113507656 113512443 - Btf3l4 protein_coding processed_transcript MGP_C57BL6NJ_T0069178.1 MGP_C57BL6NJ_G0029394.1 mouse_genomes_project 4 144159894 144162676 + MGP_C57BL6NJ_P0069178 4930549C01Rik protein_coding protein_coding MGP_C57BL6NJ_T0066270.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 57972105 58084846 - MGP_C57BL6NJ_P0066270 Ptpn3 protein_coding protein_coding MGP_C57BL6NJ_T0066271.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 57999611 58003319 - Ptpn3 protein_coding processed_transcript MGP_C57BL6NJ_T0066272.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 58026333 58083384 - MGP_C57BL6NJ_P0066272 Ptpn3 protein_coding protein_coding MGP_C57BL6NJ_T0066273.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 58036110 58083924 - Ptpn3 protein_coding processed_transcript MGP_C57BL6NJ_T0066274.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 58046247 58084516 - MGP_C57BL6NJ_P0066274 Ptpn3 protein_coding protein_coding MGP_C57BL6NJ_T0066275.1 MGP_C57BL6NJ_G0028737.1 mouse_genomes_project 4 58051239 58083765 - MGP_C57BL6NJ_P0066275 Ptpn3 protein_coding protein_coding MGP_C57BL6NJ_T0069190.1 MGP_C57BL6NJ_G0029400.1 mouse_genomes_project 4 144500456 144527235 - MGP_C57BL6NJ_P0069190 Epha8 protein_coding protein_coding MGP_C57BL6NJ_T0008099.1 MGP_C57BL6NJ_G0006619.1 mouse_genomes_project 4 112352140 112359145 + Gm12907 lincRNA lincRNA MGP_C57BL6NJ_T0004586.1 MGP_C57BL6NJ_G0003990.1 mouse_genomes_project 4 18121113 18125233 + Gm11872 antisense antisense MGP_C57BL6NJ_T0101691.1 MGP_C57BL6NJ_G0039737.1 mouse_genomes_project 4 110609647 110609762 - Gm26047 snoRNA snoRNA MGP_C57BL6NJ_T0067097.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111171533 111188222 - MGP_C57BL6NJ_P0067097 Ttc4 protein_coding protein_coding MGP_C57BL6NJ_T0067098.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111171537 111187964 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0067099.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111171710 111176825 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0067100.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111172341 111188144 - MGP_C57BL6NJ_P0067100 Ttc4 protein_coding protein_coding MGP_C57BL6NJ_T0067101.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111176921 111180961 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0067102.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111177424 111180309 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0067103.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111179740 111188169 - MGP_C57BL6NJ_P0067103 Ttc4 protein_coding protein_coding MGP_C57BL6NJ_T0067104.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111181015 111188179 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0067105.1 MGP_C57BL6NJ_G0028946.1 mouse_genomes_project 4 111185567 111188167 - Ttc4 protein_coding processed_transcript MGP_C57BL6NJ_T0098875.1 MGP_C57BL6NJ_G0036939.1 mouse_genomes_project 4 136768367 136770007 + pseudogene pseudogene MGP_C57BL6NJ_T0008047.1 MGP_C57BL6NJ_G0006579.1 mouse_genomes_project 4 72758387 72818169 - Gm11228 lincRNA lincRNA MGP_C57BL6NJ_T0065481.1 MGP_C57BL6NJ_G0028550.1 mouse_genomes_project 4 38697533 38699015 + MGP_C57BL6NJ_P0065481 1700009N14Rik protein_coding protein_coding MGP_C57BL6NJ_T0065233.1 MGP_C57BL6NJ_G0028488.1 mouse_genomes_project 4 13543647 13583070 - MGP_C57BL6NJ_P0065233 Ripk2 protein_coding protein_coding MGP_C57BL6NJ_T0065234.1 MGP_C57BL6NJ_G0028488.1 mouse_genomes_project 4 13543655 13583066 - MGP_C57BL6NJ_P0065234 Ripk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015026.1 MGP_C57BL6NJ_G0013071.1 mouse_genomes_project 4 101430883 101431550 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004710.1 MGP_C57BL6NJ_G0004085.1 mouse_genomes_project 4 141071634 141076333 + Gm12977 antisense antisense MGP_C57BL6NJ_T0004711.1 MGP_C57BL6NJ_G0004085.1 mouse_genomes_project 4 141072281 141075559 + Gm12977 antisense antisense MGP_C57BL6NJ_T0004627.1 MGP_C57BL6NJ_G0004025.1 mouse_genomes_project 4 85336952 85381555 + Gm11266 antisense antisense MGP_C57BL6NJ_T0014957.1 MGP_C57BL6NJ_G0013002.1 mouse_genomes_project 4 74324366 74324699 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100372.1 MGP_C57BL6NJ_G0038418.1 mouse_genomes_project 4 105402319 105402483 + Gm25124 snRNA snRNA MGP_C57BL6NJ_T0069169.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144093821 144148435 - MGP_C57BL6NJ_P0069169 Kdm1a protein_coding protein_coding MGP_C57BL6NJ_T0069170.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144093825 144148399 - MGP_C57BL6NJ_P0069170 Kdm1a protein_coding protein_coding MGP_C57BL6NJ_T0069171.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144094129 144148020 - MGP_C57BL6NJ_P0069171 Kdm1a protein_coding protein_coding MGP_C57BL6NJ_T0069172.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144094158 144095824 - Kdm1a protein_coding retained_intron MGP_C57BL6NJ_T0069173.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144095154 144096454 - Kdm1a protein_coding retained_intron MGP_C57BL6NJ_T0069174.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144096402 144098606 - Kdm1a protein_coding retained_intron MGP_C57BL6NJ_T0069175.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144098488 144104734 - Kdm1a protein_coding retained_intron MGP_C57BL6NJ_T0069176.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144098516 144111840 - MGP_C57BL6NJ_P0069176 Kdm1a protein_coding protein_coding MGP_C57BL6NJ_T0069177.1 MGP_C57BL6NJ_G0029393.1 mouse_genomes_project 4 144101764 144120404 - MGP_C57BL6NJ_P0069177 Kdm1a protein_coding protein_coding MGP_C57BL6NJ_T0103127.1 MGP_C57BL6NJ_G0040921.1 mouse_genomes_project 4 41346918 41468419 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067670.1 MGP_C57BL6NJ_G0029057.1 mouse_genomes_project 4 122188660 122276931 + MGP_C57BL6NJ_P0067670 Tesk2 protein_coding protein_coding MGP_C57BL6NJ_T0067671.1 MGP_C57BL6NJ_G0029057.1 mouse_genomes_project 4 122188681 122278645 + MGP_C57BL6NJ_P0067671 Tesk2 protein_coding protein_coding MGP_C57BL6NJ_T0067672.1 MGP_C57BL6NJ_G0029057.1 mouse_genomes_project 4 122210473 122276791 + MGP_C57BL6NJ_P0067672 Tesk2 protein_coding protein_coding MGP_C57BL6NJ_T0067673.1 MGP_C57BL6NJ_G0029057.1 mouse_genomes_project 4 122242130 122274952 + Tesk2 protein_coding processed_transcript MGP_C57BL6NJ_T0068823.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140374649 140386377 - MGP_C57BL6NJ_P0068823 Tmem222 protein_coding protein_coding MGP_C57BL6NJ_T0068824.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140375434 140386247 - MGP_C57BL6NJ_P0068824 Tmem222 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068825.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140375480 140386355 - MGP_C57BL6NJ_P0068825 Tmem222 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068826.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140375491 140386203 - MGP_C57BL6NJ_P0068826 Tmem222 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068827.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140375506 140378721 - Tmem222 protein_coding retained_intron MGP_C57BL6NJ_T0068828.1 MGP_C57BL6NJ_G0029315.1 mouse_genomes_project 4 140379500 140386336 - Tmem222 protein_coding retained_intron MGP_C57BL6NJ_T0065914.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43890995 43936108 - MGP_C57BL6NJ_P0065914 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065915.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43890998 43935826 - MGP_C57BL6NJ_P0065915 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065916.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43894205 43927438 - MGP_C57BL6NJ_P0065916 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065917.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43894209 43936148 - MGP_C57BL6NJ_P0065917 Rnf38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065918.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43894291 43904841 - Rnf38 protein_coding processed_transcript MGP_C57BL6NJ_T0065919.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43908152 43938734 - MGP_C57BL6NJ_P0065919 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065920.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43908206 43927549 - MGP_C57BL6NJ_P0065920 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065921.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43908250 43936505 - MGP_C57BL6NJ_P0065921 Rnf38 protein_coding protein_coding MGP_C57BL6NJ_T0065922.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43915743 43936035 - Rnf38 protein_coding processed_transcript MGP_C57BL6NJ_T0065923.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43915750 44005004 - Rnf38 protein_coding processed_transcript MGP_C57BL6NJ_T0065924.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43915779 43936422 - Rnf38 protein_coding processed_transcript MGP_C57BL6NJ_T0065925.1 MGP_C57BL6NJ_G0028651.1 mouse_genomes_project 4 43927467 43935992 - Rnf38 protein_coding processed_transcript MGP_C57BL6NJ_T0069876.1 MGP_C57BL6NJ_G0029581.1 mouse_genomes_project 4 159627692 159654658 + MGP_C57BL6NJ_P0069876 Slc2a7 protein_coding protein_coding MGP_C57BL6NJ_T0069877.1 MGP_C57BL6NJ_G0029581.1 mouse_genomes_project 4 159642755 159643628 + Slc2a7 protein_coding retained_intron MGP_C57BL6NJ_T0100398.1 MGP_C57BL6NJ_G0038444.1 mouse_genomes_project 4 139456410 139456504 + Gm23055 snRNA snRNA MGP_C57BL6NJ_T0101690.1 MGP_C57BL6NJ_G0039736.1 mouse_genomes_project 4 110609647 110609760 - Gm26047 snoRNA snoRNA MGP_C57BL6NJ_T0069770.1 MGP_C57BL6NJ_G0029560.1 mouse_genomes_project 4 157913205 157948447 + MGP_C57BL6NJ_P0069770 Gm572 protein_coding protein_coding MGP_C57BL6NJ_T0067591.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121525370 121542289 + Pomgnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0067593.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121540675 121563114 + MGP_C57BL6NJ_P0067593 Pomgnt1 protein_coding protein_coding MGP_C57BL6NJ_T0067594.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121540690 121563115 + Pomgnt1 protein_coding retained_intron MGP_C57BL6NJ_T0067596.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121541193 121563110 + MGP_C57BL6NJ_P0067596 Pomgnt1 protein_coding protein_coding MGP_C57BL6NJ_T0067597.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121553783 121563110 + MGP_C57BL6NJ_P0067597 Pomgnt1 protein_coding protein_coding MGP_C57BL6NJ_T0067598.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121553790 121563110 + MGP_C57BL6NJ_P0067598 Pomgnt1 protein_coding protein_coding MGP_C57BL6NJ_T0067599.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121554696 121562703 + MGP_C57BL6NJ_P0067599 Pomgnt1 protein_coding protein_coding MGP_C57BL6NJ_T0067600.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121557860 121559058 + Pomgnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0067601.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121558584 121562260 + Pomgnt1 protein_coding retained_intron MGP_C57BL6NJ_T0067602.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121559202 121559919 + Pomgnt1 protein_coding retained_intron MGP_C57BL6NJ_T0067603.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121559214 121562324 + Pomgnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0067604.1 MGP_C57BL6NJ_G0029042.1 mouse_genomes_project 4 121560657 121562291 + Pomgnt1 protein_coding retained_intron MGP_C57BL6NJ_T0065886.1 MGP_C57BL6NJ_G0028645.1 mouse_genomes_project 4 43584958 43588664 + MGP_C57BL6NJ_P0065886 Olfr155 protein_coding protein_coding MGP_C57BL6NJ_T0065887.1 MGP_C57BL6NJ_G0028645.1 mouse_genomes_project 4 43587685 43588857 + MGP_C57BL6NJ_P0065887 Olfr155 protein_coding protein_coding MGP_C57BL6NJ_T0014793.1 MGP_C57BL6NJ_G0012838.1 mouse_genomes_project 4 18659817 18660049 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007997.1 MGP_C57BL6NJ_G0006536.1 mouse_genomes_project 4 28941702 29055319 + Gm11924 lincRNA lincRNA MGP_C57BL6NJ_T0014823.1 MGP_C57BL6NJ_G0012868.1 mouse_genomes_project 4 26701827 26702834 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066429.1 MGP_C57BL6NJ_G0028781.1 mouse_genomes_project 4 64103624 64277260 + MGP_C57BL6NJ_P0066429 Zfp618 protein_coding protein_coding MGP_C57BL6NJ_T0066430.1 MGP_C57BL6NJ_G0028781.1 mouse_genomes_project 4 64103624 64252008 + MGP_C57BL6NJ_P0066430 Zfp618 protein_coding protein_coding MGP_C57BL6NJ_T0066431.1 MGP_C57BL6NJ_G0028781.1 mouse_genomes_project 4 64103625 64271582 + MGP_C57BL6NJ_P0066431 Zfp618 protein_coding protein_coding MGP_C57BL6NJ_T0066432.1 MGP_C57BL6NJ_G0028781.1 mouse_genomes_project 4 64256659 64257688 + Zfp618 protein_coding processed_transcript MGP_C57BL6NJ_T0068885.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141198425 141234338 - MGP_C57BL6NJ_P0068885 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068886.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141198454 141234335 - MGP_C57BL6NJ_P0068886 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068887.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141198455 141210008 - Dhdds protein_coding processed_transcript MGP_C57BL6NJ_T0068888.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141198460 141233841 - Dhdds protein_coding processed_transcript MGP_C57BL6NJ_T0068889.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141198572 141234319 - Dhdds protein_coding processed_transcript MGP_C57BL6NJ_T0068890.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141199590 141234319 - MGP_C57BL6NJ_P0068890 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068891.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141200318 141226087 - MGP_C57BL6NJ_P0068891 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068892.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141200346 141233841 - MGP_C57BL6NJ_P0068892 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068893.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141200378 141233841 - MGP_C57BL6NJ_P0068893 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068894.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141200640 141234366 - MGP_C57BL6NJ_P0068894 Dhdds protein_coding protein_coding MGP_C57BL6NJ_T0068895.1 MGP_C57BL6NJ_G0029331.1 mouse_genomes_project 4 141209591 141228812 - Dhdds protein_coding processed_transcript MGP_C57BL6NJ_T0065561.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40793137 40873581 - MGP_C57BL6NJ_P0065561 Kif24 protein_coding protein_coding MGP_C57BL6NJ_T0065562.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40794003 40873589 - MGP_C57BL6NJ_P0065562 Kif24 protein_coding protein_coding MGP_C57BL6NJ_T0065563.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40797577 40815534 - Kif24 protein_coding processed_transcript MGP_C57BL6NJ_T0065564.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40805729 40807215 - Kif24 protein_coding processed_transcript MGP_C57BL6NJ_T0065565.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40819303 40873581 - Kif24 protein_coding processed_transcript MGP_C57BL6NJ_T0065566.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40834219 40873587 - MGP_C57BL6NJ_P0065566 Kif24 protein_coding protein_coding MGP_C57BL6NJ_T0065567.1 MGP_C57BL6NJ_G0028571.1 mouse_genomes_project 4 40854402 40873587 - Kif24 protein_coding processed_transcript MGP_C57BL6NJ_T0014761.1 MGP_C57BL6NJ_G0012806.1 mouse_genomes_project 4 9242389 9246672 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010875.1 MGP_C57BL6NJ_G0008960.1 mouse_genomes_project 4 141761736 141761827 + Gm23634 miRNA miRNA MGP_C57BL6NJ_T0069777.1 MGP_C57BL6NJ_G0029562.1 mouse_genomes_project 4 158272320 158423982 - MGP_C57BL6NJ_P0069777 Pex14 protein_coding protein_coding MGP_C57BL6NJ_T0069778.1 MGP_C57BL6NJ_G0029562.1 mouse_genomes_project 4 158275017 158423922 - Pex14 protein_coding retained_intron MGP_C57BL6NJ_T0069779.1 MGP_C57BL6NJ_G0029562.1 mouse_genomes_project 4 158295071 158423921 - Pex14 protein_coding processed_transcript MGP_C57BL6NJ_T0069780.1 MGP_C57BL6NJ_G0029562.1 mouse_genomes_project 4 158295822 158423915 - MGP_C57BL6NJ_P0069780 Pex14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069781.1 MGP_C57BL6NJ_G0029562.1 mouse_genomes_project 4 158331378 158423934 - Pex14 protein_coding processed_transcript MGP_C57BL6NJ_T0066335.1 MGP_C57BL6NJ_G0028754.1 mouse_genomes_project 4 59956786 60059654 - MGP_C57BL6NJ_P0066335 AI481877 protein_coding protein_coding MGP_C57BL6NJ_T0066336.1 MGP_C57BL6NJ_G0028754.1 mouse_genomes_project 4 59998228 60030865 - AI481877 protein_coding retained_intron MGP_C57BL6NJ_T0018573.1 MGP_C57BL6NJ_G0015973.1 mouse_genomes_project 4 148838078 148846710 + Gm13032 processed_transcript processed_transcript MGP_C57BL6NJ_T0065462.1 MGP_C57BL6NJ_G0028546.1 mouse_genomes_project 4 33802872 34029750 - MGP_C57BL6NJ_P0065462 Mob3b protein_coding protein_coding MGP_C57BL6NJ_T0065463.1 MGP_C57BL6NJ_G0028546.1 mouse_genomes_project 4 33954205 34029750 - Mob3b protein_coding processed_transcript MGP_C57BL6NJ_T0068815.1 MGP_C57BL6NJ_G0029313.1 mouse_genomes_project 4 140346660 140358742 + MGP_C57BL6NJ_P0068815 Map3k6 protein_coding protein_coding MGP_C57BL6NJ_T0068816.1 MGP_C57BL6NJ_G0029313.1 mouse_genomes_project 4 140353014 140353882 + Map3k6 protein_coding processed_transcript MGP_C57BL6NJ_T0068817.1 MGP_C57BL6NJ_G0029313.1 mouse_genomes_project 4 140353090 140353910 + Map3k6 protein_coding processed_transcript MGP_C57BL6NJ_T0068818.1 MGP_C57BL6NJ_G0029313.1 mouse_genomes_project 4 140356661 140358741 + Map3k6 protein_coding processed_transcript MGP_C57BL6NJ_T0010851.1 MGP_C57BL6NJ_G0008936.1 mouse_genomes_project 4 112009209 112009294 + Gm24804 miRNA miRNA MGP_C57BL6NJ_T0070251.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165587200 165617037 + MGP_C57BL6NJ_P0070251 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070252.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165588518 165617041 + MGP_C57BL6NJ_P0070252 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070253.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165588644 165603136 + Nadk protein_coding processed_transcript MGP_C57BL6NJ_T0070254.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165588660 165603130 + MGP_C57BL6NJ_P0070254 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070255.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165588726 165605426 + MGP_C57BL6NJ_P0070255 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070256.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165588890 165605380 + MGP_C57BL6NJ_P0070256 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070257.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165608534 165617041 + MGP_C57BL6NJ_P0070257 Nadk protein_coding protein_coding MGP_C57BL6NJ_T0070258.1 MGP_C57BL6NJ_G0029646.1 mouse_genomes_project 4 165612816 165615660 + Nadk protein_coding processed_transcript MGP_C57BL6NJ_T0065651.1 MGP_C57BL6NJ_G0028601.1 mouse_genomes_project 4 42225330 42225919 + MGP_C57BL6NJ_P0065651 protein_coding protein_coding MGP_C57BL6NJ_T0015077.1 MGP_C57BL6NJ_G0013122.1 mouse_genomes_project 4 116708135 116709185 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067456.1 MGP_C57BL6NJ_G0029005.1 mouse_genomes_project 4 116980624 117001301 + MGP_C57BL6NJ_P0067456 Skint1 protein_coding protein_coding MGP_C57BL6NJ_T0067457.1 MGP_C57BL6NJ_G0029005.1 mouse_genomes_project 4 116980624 117005319 + MGP_C57BL6NJ_P0067457 Skint1 protein_coding protein_coding MGP_C57BL6NJ_T0067458.1 MGP_C57BL6NJ_G0029005.1 mouse_genomes_project 4 116980624 117001301 + MGP_C57BL6NJ_P0067458 Skint1 protein_coding protein_coding MGP_C57BL6NJ_T0067459.1 MGP_C57BL6NJ_G0029005.1 mouse_genomes_project 4 116980624 116993790 + MGP_C57BL6NJ_P0067459 Skint1 protein_coding protein_coding MGP_C57BL6NJ_T0067460.1 MGP_C57BL6NJ_G0029005.1 mouse_genomes_project 4 116980637 116986675 + Skint1 protein_coding retained_intron MGP_C57BL6NJ_T0067716.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122630519 122633634 - Btbd19 protein_coding processed_transcript MGP_C57BL6NJ_T0067717.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122631180 122633689 - Btbd19 protein_coding processed_transcript MGP_C57BL6NJ_T0067718.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122631478 122636905 - MGP_C57BL6NJ_P0067718 Btbd19 protein_coding protein_coding MGP_C57BL6NJ_T0067719.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122631954 122633663 - Btbd19 protein_coding processed_transcript MGP_C57BL6NJ_T0067720.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122632009 122632569 - Btbd19 protein_coding retained_intron MGP_C57BL6NJ_T0067721.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122632032 122633181 - Btbd19 protein_coding retained_intron MGP_C57BL6NJ_T0067722.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122632616 122637012 - MGP_C57BL6NJ_P0067722 Btbd19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067723.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122632743 122636945 - MGP_C57BL6NJ_P0067723 Btbd19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067724.1 MGP_C57BL6NJ_G0029066.1 mouse_genomes_project 4 122635263 122636453 - Btbd19 protein_coding processed_transcript MGP_C57BL6NJ_T0065815.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43197313 43205992 - Tpm2 protein_coding processed_transcript MGP_C57BL6NJ_T0065816.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43197313 43206149 - MGP_C57BL6NJ_P0065816 Tpm2 protein_coding protein_coding MGP_C57BL6NJ_T0065817.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43197313 43206018 - MGP_C57BL6NJ_P0065817 Tpm2 protein_coding protein_coding MGP_C57BL6NJ_T0065818.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43197314 43205942 - MGP_C57BL6NJ_P0065818 Tpm2 protein_coding protein_coding MGP_C57BL6NJ_T0065819.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43198284 43202223 - Tpm2 protein_coding processed_transcript MGP_C57BL6NJ_T0065820.1 MGP_C57BL6NJ_G0028628.1 mouse_genomes_project 4 43202221 43206319 - MGP_C57BL6NJ_P0065820 Tpm2 protein_coding protein_coding MGP_C57BL6NJ_T0069673.1 MGP_C57BL6NJ_G0029543.1 mouse_genomes_project 4 157217800 157219158 + MGP_C57BL6NJ_P0069673 Nppa protein_coding protein_coding MGP_C57BL6NJ_T0103156.1 MGP_C57BL6NJ_G0040950.1 mouse_genomes_project 4 119236221 119237233 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069577.1 MGP_C57BL6NJ_G0029494.1 mouse_genomes_project 4 151672797 151681465 + MGP_C57BL6NJ_P0069577 Pramef8 protein_coding protein_coding MGP_C57BL6NJ_T0069578.1 MGP_C57BL6NJ_G0029494.1 mouse_genomes_project 4 151673343 151677216 + MGP_C57BL6NJ_P0069578 Pramef8 protein_coding protein_coding MGP_C57BL6NJ_T0069579.1 MGP_C57BL6NJ_G0029494.1 mouse_genomes_project 4 151673358 151681465 + MGP_C57BL6NJ_P0069579 Pramef8 protein_coding protein_coding MGP_C57BL6NJ_T0069580.1 MGP_C57BL6NJ_G0029494.1 mouse_genomes_project 4 151673380 151678043 + MGP_C57BL6NJ_P0069580 Pramef8 protein_coding protein_coding MGP_C57BL6NJ_T0069581.1 MGP_C57BL6NJ_G0029494.1 mouse_genomes_project 4 151673381 151674748 + Pramef8 protein_coding processed_transcript MGP_C57BL6NJ_T0099099.1 MGP_C57BL6NJ_G0037163.1 mouse_genomes_project 4 43387143 43387275 + Gm23257 rRNA rRNA MGP_C57BL6NJ_T0069627.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153327641 153557641 - MGP_C57BL6NJ_P0069627 Vps13d protein_coding protein_coding MGP_C57BL6NJ_T0069628.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153327645 153553302 - MGP_C57BL6NJ_P0069628 Vps13d protein_coding protein_coding MGP_C57BL6NJ_T0069629.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153327645 153446503 - MGP_C57BL6NJ_P0069629 Vps13d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069630.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153329615 153512142 - MGP_C57BL6NJ_P0069630 Vps13d protein_coding protein_coding MGP_C57BL6NJ_T0069631.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153329945 153338981 - Vps13d protein_coding processed_transcript MGP_C57BL6NJ_T0069632.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153335317 153408765 - Vps13d protein_coding retained_intron MGP_C57BL6NJ_T0069633.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153371643 153405656 - Vps13d protein_coding processed_transcript MGP_C57BL6NJ_T0069634.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153407603 153412820 - Vps13d protein_coding retained_intron MGP_C57BL6NJ_T0069635.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153424578 153427213 - Vps13d protein_coding retained_intron MGP_C57BL6NJ_T0069636.1 MGP_C57BL6NJ_G0029528.1 mouse_genomes_project 4 153537516 153557631 - Vps13d protein_coding retained_intron MGP_C57BL6NJ_T0010878.1 MGP_C57BL6NJ_G0008963.1 mouse_genomes_project 4 142879490 142879619 - Gm25317 miRNA miRNA MGP_C57BL6NJ_T0065976.1 MGP_C57BL6NJ_G0028658.1 mouse_genomes_project 4 44884728 44934576 - MGP_C57BL6NJ_P0065976 Fbxo10 protein_coding protein_coding MGP_C57BL6NJ_T0065977.1 MGP_C57BL6NJ_G0028658.1 mouse_genomes_project 4 44884729 44912486 - MGP_C57BL6NJ_P0065977 Fbxo10 protein_coding protein_coding MGP_C57BL6NJ_T0065978.1 MGP_C57BL6NJ_G0028658.1 mouse_genomes_project 4 44896769 44909100 - Fbxo10 protein_coding processed_transcript MGP_C57BL6NJ_T0014976.1 MGP_C57BL6NJ_G0013021.1 mouse_genomes_project 4 79135483 79135720 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070302.1 MGP_C57BL6NJ_G0029657.1 mouse_genomes_project 4 165825004 165829165 - MGP_C57BL6NJ_P0070302 Tmem88b protein_coding protein_coding MGP_C57BL6NJ_T0014831.1 MGP_C57BL6NJ_G0012876.1 mouse_genomes_project 4 27914594 27915102 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008197.1 MGP_C57BL6NJ_G0006690.1 mouse_genomes_project 4 157993816 157996695 + Gm13203 lincRNA lincRNA MGP_C57BL6NJ_T0069410.1 MGP_C57BL6NJ_G0029453.1 mouse_genomes_project 4 148765384 148798067 - MGP_C57BL6NJ_P0069410 Padi4 protein_coding protein_coding MGP_C57BL6NJ_T0069411.1 MGP_C57BL6NJ_G0029453.1 mouse_genomes_project 4 148771465 148777140 - Padi4 protein_coding processed_transcript MGP_C57BL6NJ_T0069412.1 MGP_C57BL6NJ_G0029453.1 mouse_genomes_project 4 148775117 148781082 - Padi4 protein_coding processed_transcript MGP_C57BL6NJ_T0069413.1 MGP_C57BL6NJ_G0029453.1 mouse_genomes_project 4 148777308 148781075 - Padi4 protein_coding processed_transcript MGP_C57BL6NJ_T0066522.1 MGP_C57BL6NJ_G0028808.1 mouse_genomes_project 4 75952478 75954847 - 2310002L09Rik protein_coding processed_transcript MGP_C57BL6NJ_T0066523.1 MGP_C57BL6NJ_G0028808.1 mouse_genomes_project 4 75952478 75963892 - MGP_C57BL6NJ_P0066523 2310002L09Rik protein_coding protein_coding MGP_C57BL6NJ_T0066524.1 MGP_C57BL6NJ_G0028808.1 mouse_genomes_project 4 75954624 75963891 - MGP_C57BL6NJ_P0066524 2310002L09Rik protein_coding protein_coding MGP_C57BL6NJ_T0066219.1 MGP_C57BL6NJ_G0028724.1 mouse_genomes_project 4 54402846 54444899 + MGP_C57BL6NJ_P0066219 Tmem38b protein_coding protein_coding MGP_C57BL6NJ_T0066220.1 MGP_C57BL6NJ_G0028724.1 mouse_genomes_project 4 54402856 54409556 + Tmem38b protein_coding processed_transcript MGP_C57BL6NJ_T0066221.1 MGP_C57BL6NJ_G0028724.1 mouse_genomes_project 4 54402858 54424703 + Tmem38b protein_coding processed_transcript MGP_C57BL6NJ_T0066222.1 MGP_C57BL6NJ_G0028724.1 mouse_genomes_project 4 54417317 54435728 + MGP_C57BL6NJ_P0066222 Tmem38b protein_coding protein_coding MGP_C57BL6NJ_T0008060.1 MGP_C57BL6NJ_G0006590.1 mouse_genomes_project 4 90463453 90466362 + Gm12600 lincRNA lincRNA MGP_C57BL6NJ_T0004717.1 MGP_C57BL6NJ_G0004091.1 mouse_genomes_project 4 145063526 145065343 - Gm13010 antisense antisense MGP_C57BL6NJ_T0067085.1 MGP_C57BL6NJ_G0028941.1 mouse_genomes_project 4 110977234 110986060 - MGP_C57BL6NJ_P0067085 Bsnd protein_coding protein_coding MGP_C57BL6NJ_T0100386.1 MGP_C57BL6NJ_G0038432.1 mouse_genomes_project 4 122739485 122739601 + Gm23287 snRNA snRNA MGP_C57BL6NJ_T0008004.1 MGP_C57BL6NJ_G0006543.1 mouse_genomes_project 4 39808539 39851866 - 4933428C19Rik lincRNA lincRNA MGP_C57BL6NJ_T0065390.1 MGP_C57BL6NJ_G0028527.1 mouse_genomes_project 4 31666547 31711362 + MGP_C57BL6NJ_P0065390 Rragd protein_coding protein_coding MGP_C57BL6NJ_T0065391.1 MGP_C57BL6NJ_G0028527.1 mouse_genomes_project 4 31666855 31707980 + MGP_C57BL6NJ_P0065391 Rragd protein_coding protein_coding MGP_C57BL6NJ_T0065392.1 MGP_C57BL6NJ_G0028527.1 mouse_genomes_project 4 31690519 31708000 + Rragd protein_coding processed_transcript MGP_C57BL6NJ_T0015218.1 MGP_C57BL6NJ_G0013263.1 mouse_genomes_project 4 159721352 159721780 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067516.1 MGP_C57BL6NJ_G0029026.1 mouse_genomes_project 4 120879247 120910173 + MGP_C57BL6NJ_P0067516 protein_coding protein_coding MGP_C57BL6NJ_T0067517.1 MGP_C57BL6NJ_G0029026.1 mouse_genomes_project 4 120879282 120900538 + MGP_C57BL6NJ_P0067517 protein_coding protein_coding MGP_C57BL6NJ_T0067518.1 MGP_C57BL6NJ_G0029026.1 mouse_genomes_project 4 120879296 120910171 + MGP_C57BL6NJ_P0067518 protein_coding protein_coding MGP_C57BL6NJ_T0014812.1 MGP_C57BL6NJ_G0012857.1 mouse_genomes_project 4 23658733 23659224 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065334.1 MGP_C57BL6NJ_G0028516.1 mouse_genomes_project 4 23727233 23934595 - MGP_C57BL6NJ_P0065334 Fut9 protein_coding protein_coding MGP_C57BL6NJ_T0065335.1 MGP_C57BL6NJ_G0028516.1 mouse_genomes_project 4 23736799 23934693 - MGP_C57BL6NJ_P0065335 Fut9 protein_coding protein_coding MGP_C57BL6NJ_T0065336.1 MGP_C57BL6NJ_G0028516.1 mouse_genomes_project 4 23932151 23934304 - Fut9 protein_coding processed_transcript MGP_C57BL6NJ_T0066709.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 90983574 91261399 - MGP_C57BL6NJ_P0066709 Mllt3 protein_coding protein_coding MGP_C57BL6NJ_T0066710.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 90987342 91021975 - MGP_C57BL6NJ_P0066710 Mllt3 protein_coding protein_coding MGP_C57BL6NJ_T0066711.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 90987379 91021946 - MGP_C57BL6NJ_P0066711 Mllt3 protein_coding protein_coding MGP_C57BL6NJ_T0066712.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 91006160 91261585 - Mllt3 protein_coding processed_transcript MGP_C57BL6NJ_T0066713.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 91048649 91090327 - Mllt3 protein_coding processed_transcript MGP_C57BL6NJ_T0066714.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 91053287 91260581 - Mllt3 protein_coding retained_intron MGP_C57BL6NJ_T0066715.1 MGP_C57BL6NJ_G0028838.1 mouse_genomes_project 4 91056952 91260581 - MGP_C57BL6NJ_P0066715 Mllt3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014818.1 MGP_C57BL6NJ_G0012863.1 mouse_genomes_project 4 25339640 25339888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069972.1 MGP_C57BL6NJ_G0029599.1 mouse_genomes_project 4 161709916 161719433 - MGP_C57BL6NJ_P0069972 Tas1r1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069973.1 MGP_C57BL6NJ_G0029599.1 mouse_genomes_project 4 161709925 161720587 - MGP_C57BL6NJ_P0069973 Tas1r1 protein_coding protein_coding MGP_C57BL6NJ_T0070150.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164834415 164868545 + MGP_C57BL6NJ_P0070150 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070151.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164834415 164868538 + MGP_C57BL6NJ_P0070151 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070152.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164834466 164868545 + MGP_C57BL6NJ_P0070152 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070153.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164836425 164868538 + MGP_C57BL6NJ_P0070153 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070154.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164836459 164868538 + MGP_C57BL6NJ_P0070154 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070155.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164848552 164858720 + MGP_C57BL6NJ_P0070155 Mmel1 protein_coding protein_coding MGP_C57BL6NJ_T0070156.1 MGP_C57BL6NJ_G0029630.1 mouse_genomes_project 4 164865841 164866972 + Mmel1 protein_coding retained_intron MGP_C57BL6NJ_T0068651.1 MGP_C57BL6NJ_G0029280.1 mouse_genomes_project 4 137800141 137809501 + MGP_C57BL6NJ_P0068651 Matn1 protein_coding protein_coding MGP_C57BL6NJ_T0069645.1 MGP_C57BL6NJ_G0029535.1 mouse_genomes_project 4 156686886 156694969 + MGP_C57BL6NJ_P0069645 Zfp985 protein_coding protein_coding MGP_C57BL6NJ_T0068950.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513772 141515184 + MGP_C57BL6NJ_P0068950 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068951.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513873 141515984 + MGP_C57BL6NJ_P0068951 E130218I03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068952.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513873 141515980 + MGP_C57BL6NJ_P0068952 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068953.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513886 141515100 + MGP_C57BL6NJ_P0068953 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068954.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513886 141515423 + MGP_C57BL6NJ_P0068954 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068955.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513887 141515663 + MGP_C57BL6NJ_P0068955 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068956.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141513888 141515630 + MGP_C57BL6NJ_P0068956 E130218I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0068957.1 MGP_C57BL6NJ_G0029343.1 mouse_genomes_project 4 141514093 141515388 + E130218I03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0011836.1 MGP_C57BL6NJ_G0009921.1 mouse_genomes_project 4 102202237 102202351 + Gm24203 misc_RNA misc_RNA MGP_C57BL6NJ_T0066208.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194291 54267741 + MGP_C57BL6NJ_P0066208 Fsd1l protein_coding protein_coding MGP_C57BL6NJ_T0066209.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194310 54214609 + Fsd1l protein_coding retained_intron MGP_C57BL6NJ_T0066210.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194311 54210720 + Fsd1l protein_coding retained_intron MGP_C57BL6NJ_T0066211.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194389 54261885 + MGP_C57BL6NJ_P0066211 Fsd1l protein_coding protein_coding MGP_C57BL6NJ_T0066212.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194394 54261883 + MGP_C57BL6NJ_P0066212 Fsd1l protein_coding protein_coding MGP_C57BL6NJ_T0066213.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54194536 54223316 + MGP_C57BL6NJ_P0066213 Fsd1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066214.1 MGP_C57BL6NJ_G0028721.1 mouse_genomes_project 4 54206100 54267741 + MGP_C57BL6NJ_P0066214 Fsd1l protein_coding protein_coding MGP_C57BL6NJ_T0067946.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125061902 125085032 - MGP_C57BL6NJ_P0067946 Ppih protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067947.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125061906 125084998 - MGP_C57BL6NJ_P0067947 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0067948.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125061906 125084985 - MGP_C57BL6NJ_P0067948 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0067949.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125061906 125085047 - MGP_C57BL6NJ_P0067949 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0067950.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125070786 125084918 - MGP_C57BL6NJ_P0067950 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0067951.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125071361 125084985 - MGP_C57BL6NJ_P0067951 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0067952.1 MGP_C57BL6NJ_G0029120.1 mouse_genomes_project 4 125075814 125085000 - MGP_C57BL6NJ_P0067952 Ppih protein_coding protein_coding MGP_C57BL6NJ_T0069061.1 MGP_C57BL6NJ_G0029367.1 mouse_genomes_project 4 142782278 142803780 - MGP_C57BL6NJ_P0069061 Rcan3 protein_coding protein_coding MGP_C57BL6NJ_T0069062.1 MGP_C57BL6NJ_G0029367.1 mouse_genomes_project 4 142782278 142795194 - MGP_C57BL6NJ_P0069062 Rcan3 protein_coding protein_coding MGP_C57BL6NJ_T0069063.1 MGP_C57BL6NJ_G0029367.1 mouse_genomes_project 4 142788413 142803750 - MGP_C57BL6NJ_P0069063 Rcan3 protein_coding protein_coding MGP_C57BL6NJ_T0008166.1 MGP_C57BL6NJ_G0006663.1 mouse_genomes_project 4 139347220 139348830 + Gm17300 lincRNA lincRNA MGP_C57BL6NJ_T0007980.1 MGP_C57BL6NJ_G0006520.1 mouse_genomes_project 4 9228057 9246712 - lincRNA lincRNA MGP_C57BL6NJ_T0014750.1 MGP_C57BL6NJ_G0012795.1 mouse_genomes_project 4 7465295 7466224 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004682.1 MGP_C57BL6NJ_G0004063.1 mouse_genomes_project 4 124885091 124890101 - Gm12868 antisense antisense MGP_C57BL6NJ_T0070203.1 MGP_C57BL6NJ_G0029639.1 mouse_genomes_project 4 165151363 165184227 - Ski protein_coding processed_transcript MGP_C57BL6NJ_T0070204.1 MGP_C57BL6NJ_G0029639.1 mouse_genomes_project 4 165151363 165218378 - MGP_C57BL6NJ_P0070204 Ski protein_coding protein_coding MGP_C57BL6NJ_T0070205.1 MGP_C57BL6NJ_G0029639.1 mouse_genomes_project 4 165151363 165218435 - MGP_C57BL6NJ_P0070205 Ski protein_coding protein_coding MGP_C57BL6NJ_T0101651.1 MGP_C57BL6NJ_G0039697.1 mouse_genomes_project 4 40586745 40586822 - Gm22888 snoRNA snoRNA MGP_C57BL6NJ_T0103160.1 MGP_C57BL6NJ_G0040954.1 mouse_genomes_project 4 122664774 122668155 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066696.1 MGP_C57BL6NJ_G0028836.1 mouse_genomes_project 4 89991316 90049773 + MGP_C57BL6NJ_P0066696 Acer2 protein_coding protein_coding MGP_C57BL6NJ_T0066697.1 MGP_C57BL6NJ_G0028836.1 mouse_genomes_project 4 89991334 90067213 + Acer2 protein_coding processed_transcript MGP_C57BL6NJ_T0066698.1 MGP_C57BL6NJ_G0028836.1 mouse_genomes_project 4 89991334 90049773 + MGP_C57BL6NJ_P0066698 Acer2 protein_coding protein_coding MGP_C57BL6NJ_T0066699.1 MGP_C57BL6NJ_G0028836.1 mouse_genomes_project 4 90065464 90069544 + Acer2 protein_coding processed_transcript MGP_C57BL6NJ_T0066778.1 MGP_C57BL6NJ_G0028869.1 mouse_genomes_project 4 98221313 98221846 + MGP_C57BL6NJ_P0066778 Gm10306 protein_coding protein_coding MGP_C57BL6NJ_T0103147.1 MGP_C57BL6NJ_G0040941.1 mouse_genomes_project 4 99902790 99902996 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067411.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115204912 115822284 + MGP_C57BL6NJ_P0067411 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067412.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115204949 115501738 + MGP_C57BL6NJ_P0067412 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067413.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115204949 116572567 + MGP_C57BL6NJ_P0067413 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067414.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115204949 116471919 + MGP_C57BL6NJ_P0067414 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067415.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115205042 116564489 + MGP_C57BL6NJ_P0067415 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067416.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115205042 116564489 + MGP_C57BL6NJ_P0067416 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067417.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115989665 116142553 + Agbl4 protein_coding processed_transcript MGP_C57BL6NJ_T0067418.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 115989735 116526843 + MGP_C57BL6NJ_P0067418 Agbl4 protein_coding protein_coding MGP_C57BL6NJ_T0067425.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 116471603 116563548 + Agbl4 protein_coding processed_transcript MGP_C57BL6NJ_T0067426.1 MGP_C57BL6NJ_G0028999.1 mouse_genomes_project 4 116471633 116564486 + Agbl4 protein_coding processed_transcript MGP_C57BL6NJ_T0066755.1 MGP_C57BL6NJ_G0028862.1 mouse_genomes_project 4 92632691 92637435 - MGP_C57BL6NJ_P0066755 Cdkn2b protein_coding protein_coding MGP_C57BL6NJ_T0011826.1 MGP_C57BL6NJ_G0009911.1 mouse_genomes_project 4 47679609 47679729 + Gm27668 misc_RNA misc_RNA MGP_C57BL6NJ_T0065075.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5572376 5642822 + Chd7 protein_coding retained_intron MGP_C57BL6NJ_T0065076.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5572440 5673257 + MGP_C57BL6NJ_P0065076 Chd7 protein_coding protein_coding MGP_C57BL6NJ_T0065077.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5574159 5756317 + MGP_C57BL6NJ_P0065077 Chd7 protein_coding protein_coding MGP_C57BL6NJ_T0065078.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5574603 5757166 + MGP_C57BL6NJ_P0065078 Chd7 protein_coding protein_coding MGP_C57BL6NJ_T0065079.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5594671 5638478 + MGP_C57BL6NJ_P0065079 Chd7 protein_coding protein_coding MGP_C57BL6NJ_T0065080.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5638353 5756731 + MGP_C57BL6NJ_P0065080 Chd7 protein_coding protein_coding MGP_C57BL6NJ_T0065081.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5638420 5756162 + MGP_C57BL6NJ_P0065081 Chd7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065082.1 MGP_C57BL6NJ_G0028453.1 mouse_genomes_project 4 5729831 5734231 + Chd7 protein_coding processed_transcript MGP_C57BL6NJ_T0069658.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157077818 157109893 - MGP_C57BL6NJ_P0069658 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0069659.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157077818 157109910 - MGP_C57BL6NJ_P0069659 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0069660.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157078235 157109904 - MGP_C57BL6NJ_P0069660 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0069661.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157085308 157109904 - MGP_C57BL6NJ_P0069661 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0069662.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157089522 157091338 - Mfn2 protein_coding processed_transcript MGP_C57BL6NJ_T0069663.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157091148 157108601 - MGP_C57BL6NJ_P0069663 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0069664.1 MGP_C57BL6NJ_G0029539.1 mouse_genomes_project 4 157099856 157109864 - MGP_C57BL6NJ_P0069664 Mfn2 protein_coding protein_coding MGP_C57BL6NJ_T0014980.1 MGP_C57BL6NJ_G0013025.1 mouse_genomes_project 4 81211044 81212321 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018494.1 MGP_C57BL6NJ_G0015926.1 mouse_genomes_project 4 9067894 9095577 + 1700123M08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018495.1 MGP_C57BL6NJ_G0015926.1 mouse_genomes_project 4 9067903 9095296 + 1700123M08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018496.1 MGP_C57BL6NJ_G0015926.1 mouse_genomes_project 4 9081484 9082984 + 1700123M08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0066071.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46513573 46544494 - MGP_C57BL6NJ_P0066071 Coro2a protein_coding protein_coding MGP_C57BL6NJ_T0066072.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46513579 46544512 - MGP_C57BL6NJ_P0066072 Coro2a protein_coding protein_coding MGP_C57BL6NJ_T0066073.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46513579 46590232 - MGP_C57BL6NJ_P0066073 Coro2a protein_coding protein_coding MGP_C57BL6NJ_T0066074.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46517179 46520708 - Coro2a protein_coding processed_transcript MGP_C57BL6NJ_T0066075.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46517954 46520844 - Coro2a protein_coding retained_intron MGP_C57BL6NJ_T0066076.1 MGP_C57BL6NJ_G0028681.1 mouse_genomes_project 4 46521042 46586370 - Coro2a protein_coding retained_intron MGP_C57BL6NJ_T0070292.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165778705 165800898 - MGP_C57BL6NJ_P0070292 Atad3a protein_coding protein_coding MGP_C57BL6NJ_T0070293.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165778898 165784410 - Atad3a protein_coding retained_intron MGP_C57BL6NJ_T0070294.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165784131 165787393 - Atad3a protein_coding retained_intron MGP_C57BL6NJ_T0070295.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165785266 165787261 - Atad3a protein_coding retained_intron MGP_C57BL6NJ_T0070296.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165788285 165795872 - MGP_C57BL6NJ_P0070296 Atad3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070297.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165788587 165794572 - MGP_C57BL6NJ_P0070297 Atad3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070298.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165789567 165800733 - MGP_C57BL6NJ_P0070298 Atad3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070299.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165793420 165800873 - MGP_C57BL6NJ_P0070299 Atad3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070300.1 MGP_C57BL6NJ_G0029655.1 mouse_genomes_project 4 165795633 165800892 - Atad3a protein_coding retained_intron MGP_C57BL6NJ_T0069550.1 MGP_C57BL6NJ_G0029486.1 mouse_genomes_project 4 150000424 150017147 - MGP_C57BL6NJ_P0069550 Efhd2 protein_coding protein_coding MGP_C57BL6NJ_T0101635.1 MGP_C57BL6NJ_G0039681.1 mouse_genomes_project 4 1395025 1395157 + Gm26436 snoRNA snoRNA MGP_C57BL6NJ_T0018522.1 MGP_C57BL6NJ_G0015943.1 mouse_genomes_project 4 73961845 73976970 + C630043F03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0065240.1 MGP_C57BL6NJ_G0028490.1 mouse_genomes_project 4 16509997 16789221 - MGP_C57BL6NJ_P0065240 Cnbd1 protein_coding protein_coding MGP_C57BL6NJ_T0011821.1 MGP_C57BL6NJ_G0009906.1 mouse_genomes_project 4 33240808 33240914 + Gm23466 misc_RNA misc_RNA MGP_C57BL6NJ_T0065703.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42633404 42641266 - MGP_C57BL6NJ_P0065703 Pigo protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065704.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42633406 42640862 - MGP_C57BL6NJ_P0065704 Pigo protein_coding protein_coding MGP_C57BL6NJ_T0065705.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42633406 42641601 - MGP_C57BL6NJ_P0065705 Pigo protein_coding protein_coding MGP_C57BL6NJ_T0065706.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42633406 42641538 - MGP_C57BL6NJ_P0065706 Pigo protein_coding protein_coding MGP_C57BL6NJ_T0065707.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42633678 42635478 - Pigo protein_coding processed_transcript MGP_C57BL6NJ_T0065708.1 MGP_C57BL6NJ_G0028615.1 mouse_genomes_project 4 42640484 42641249 - Pigo protein_coding processed_transcript MGP_C57BL6NJ_T0066433.1 MGP_C57BL6NJ_G0028782.1 mouse_genomes_project 4 64281210 64292101 - MGP_C57BL6NJ_P0066433 Ambp protein_coding protein_coding MGP_C57BL6NJ_T0066434.1 MGP_C57BL6NJ_G0028782.1 mouse_genomes_project 4 64290633 64292727 - MGP_C57BL6NJ_P0066434 Ambp protein_coding protein_coding MGP_C57BL6NJ_T0069319.1 MGP_C57BL6NJ_G0029430.1 mouse_genomes_project 4 146696492 146701368 + MGP_C57BL6NJ_P0069319 Pla2g2e protein_coding protein_coding MGP_C57BL6NJ_T0069320.1 MGP_C57BL6NJ_G0029430.1 mouse_genomes_project 4 146696521 146701073 + MGP_C57BL6NJ_P0069320 Pla2g2e protein_coding protein_coding MGP_C57BL6NJ_T0069321.1 MGP_C57BL6NJ_G0029430.1 mouse_genomes_project 4 146697910 146701368 + MGP_C57BL6NJ_P0069321 Pla2g2e protein_coding protein_coding MGP_C57BL6NJ_T0008124.1 MGP_C57BL6NJ_G0006639.1 mouse_genomes_project 4 132390355 132401493 - 2610028E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008125.1 MGP_C57BL6NJ_G0006639.1 mouse_genomes_project 4 132390355 132424765 - 2610028E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008126.1 MGP_C57BL6NJ_G0006639.1 mouse_genomes_project 4 132390701 132424872 - 2610028E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008127.1 MGP_C57BL6NJ_G0006639.1 mouse_genomes_project 4 132392919 132419626 - 2610028E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008128.1 MGP_C57BL6NJ_G0006639.1 mouse_genomes_project 4 132421029 132424872 - 2610028E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0067483.1 MGP_C57BL6NJ_G0029014.1 mouse_genomes_project 4 119606867 119833208 + MGP_C57BL6NJ_P0067483 Trabd2b protein_coding protein_coding MGP_C57BL6NJ_T0014862.1 MGP_C57BL6NJ_G0012907.1 mouse_genomes_project 4 37854246 37855168 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008150.1 MGP_C57BL6NJ_G0006655.1 mouse_genomes_project 4 137855766 137866007 - A930031H19Rik lincRNA lincRNA MGP_C57BL6NJ_T0008151.1 MGP_C57BL6NJ_G0006655.1 mouse_genomes_project 4 137855766 137860887 - A930031H19Rik lincRNA lincRNA MGP_C57BL6NJ_T0014768.1 MGP_C57BL6NJ_G0012813.1 mouse_genomes_project 4 11719270 11719711 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065181.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9147514 9198151 - MGP_C57BL6NJ_P0065181 Tmem67 protein_coding protein_coding MGP_C57BL6NJ_T0065182.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9147522 9198132 - MGP_C57BL6NJ_P0065182 Tmem67 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065183.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9147804 9200523 - MGP_C57BL6NJ_P0065183 Tmem67 protein_coding protein_coding MGP_C57BL6NJ_T0065184.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9169897 9198201 - Tmem67 protein_coding retained_intron MGP_C57BL6NJ_T0065185.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9178308 9198121 - Tmem67 protein_coding retained_intron MGP_C57BL6NJ_T0065186.1 MGP_C57BL6NJ_G0028473.1 mouse_genomes_project 4 9188781 9198126 - Tmem67 protein_coding retained_intron MGP_C57BL6NJ_T0018549.1 MGP_C57BL6NJ_G0015963.1 mouse_genomes_project 4 124698288 124737320 + Gm12861 processed_transcript processed_transcript MGP_C57BL6NJ_T0065437.1 MGP_C57BL6NJ_G0028540.1 mouse_genomes_project 4 33478411 33503925 - MGP_C57BL6NJ_P0065437 Slc35a1 protein_coding protein_coding MGP_C57BL6NJ_T0065438.1 MGP_C57BL6NJ_G0028540.1 mouse_genomes_project 4 33479047 33499949 - Slc35a1 protein_coding processed_transcript MGP_C57BL6NJ_T0065439.1 MGP_C57BL6NJ_G0028540.1 mouse_genomes_project 4 33484652 33499856 - MGP_C57BL6NJ_P0065439 Slc35a1 protein_coding protein_coding MGP_C57BL6NJ_T0065440.1 MGP_C57BL6NJ_G0028540.1 mouse_genomes_project 4 33491474 33503742 - Slc35a1 protein_coding processed_transcript MGP_C57BL6NJ_T0065441.1 MGP_C57BL6NJ_G0028540.1 mouse_genomes_project 4 33499827 33503883 - Slc35a1 protein_coding processed_transcript MGP_C57BL6NJ_T0015100.1 MGP_C57BL6NJ_G0013145.1 mouse_genomes_project 4 123286489 123287067 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067896.1 MGP_C57BL6NJ_G0029108.1 mouse_genomes_project 4 124628434 124629376 - MGP_C57BL6NJ_P0067896 Olfr1329 protein_coding protein_coding MGP_C57BL6NJ_T0069354.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147211030 147213199 - Mrto4 protein_coding processed_transcript MGP_C57BL6NJ_T0069355.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147211030 147216172 - MGP_C57BL6NJ_P0069355 Mrto4 protein_coding protein_coding MGP_C57BL6NJ_T0069356.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147211040 147215894 - MGP_C57BL6NJ_P0069356 Mrto4 protein_coding protein_coding MGP_C57BL6NJ_T0069357.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147211757 147213217 - Mrto4 protein_coding retained_intron MGP_C57BL6NJ_T0069358.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147212293 147215907 - MGP_C57BL6NJ_P0069358 Mrto4 protein_coding protein_coding MGP_C57BL6NJ_T0069359.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147212355 147216129 - Mrto4 protein_coding retained_intron MGP_C57BL6NJ_T0069360.1 MGP_C57BL6NJ_G0029440.1 mouse_genomes_project 4 147213470 147215906 - Mrto4 protein_coding retained_intron MGP_C57BL6NJ_T0067075.1 MGP_C57BL6NJ_G0028936.1 mouse_genomes_project 4 109447334 109544239 - MGP_C57BL6NJ_P0067075 Prkaa2 protein_coding protein_coding MGP_C57BL6NJ_T0101634.1 MGP_C57BL6NJ_G0039680.1 mouse_genomes_project 4 498686 498823 - Gm24125 snoRNA snoRNA MGP_C57BL6NJ_T0014760.1 MGP_C57BL6NJ_G0012805.1 mouse_genomes_project 4 8741499 8742352 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067491.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120240995 120289017 + MGP_C57BL6NJ_P0067491 Stil protein_coding protein_coding MGP_C57BL6NJ_T0067492.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120241018 120282187 + MGP_C57BL6NJ_P0067492 Stil protein_coding protein_coding MGP_C57BL6NJ_T0067493.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120241018 120289017 + MGP_C57BL6NJ_P0067493 Stil protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067494.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120247585 120257074 + MGP_C57BL6NJ_P0067494 Stil protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067495.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120250945 120264083 + Stil protein_coding processed_transcript MGP_C57BL6NJ_T0067496.1 MGP_C57BL6NJ_G0029019.1 mouse_genomes_project 4 120257008 120265640 + Stil protein_coding retained_intron MGP_C57BL6NJ_T0068770.1 MGP_C57BL6NJ_G0029302.1 mouse_genomes_project 4 139787753 139813587 - MGP_C57BL6NJ_P0068770 Smpdl3b protein_coding protein_coding MGP_C57BL6NJ_T0101682.1 MGP_C57BL6NJ_G0039728.1 mouse_genomes_project 4 85924692 85924811 + Gm24884 snoRNA snoRNA MGP_C57BL6NJ_T0066592.1 MGP_C57BL6NJ_G0028820.1 mouse_genomes_project 4 85719088 85722486 - MGP_C57BL6NJ_P0066592 Cer1 protein_coding protein_coding MGP_C57BL6NJ_T0008168.1 MGP_C57BL6NJ_G0006665.1 mouse_genomes_project 4 141002725 141003920 + Gm12974 lincRNA lincRNA MGP_C57BL6NJ_T0068209.1 MGP_C57BL6NJ_G0029189.1 mouse_genomes_project 4 131570861 131580279 - MGP_C57BL6NJ_P0068209 Zc3h12a protein_coding protein_coding MGP_C57BL6NJ_T0068210.1 MGP_C57BL6NJ_G0029189.1 mouse_genomes_project 4 131572532 131574959 - Zc3h12a protein_coding retained_intron MGP_C57BL6NJ_T0067346.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775403 113836782 - MGP_C57BL6NJ_P0067346 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067347.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775873 113925010 - MGP_C57BL6NJ_P0067347 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067348.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775908 113836796 - MGP_C57BL6NJ_P0067348 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067349.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775913 113925048 - MGP_C57BL6NJ_P0067349 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067350.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775913 113925010 - MGP_C57BL6NJ_P0067350 Osbpl9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067351.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113775913 113924993 - MGP_C57BL6NJ_P0067351 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067352.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113776042 113836681 - MGP_C57BL6NJ_P0067352 Osbpl9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067353.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113776232 113803382 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067354.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113776337 113925048 - MGP_C57BL6NJ_P0067354 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067355.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113776345 113877256 - MGP_C57BL6NJ_P0067355 Osbpl9 protein_coding protein_coding MGP_C57BL6NJ_T0067356.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113778696 113780249 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067357.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113782267 113788017 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067358.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113782621 113836458 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067359.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113799021 113828525 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067360.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113799145 113877442 - Osbpl9 protein_coding retained_intron MGP_C57BL6NJ_T0067361.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113802334 113804712 - Osbpl9 protein_coding retained_intron MGP_C57BL6NJ_T0067362.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113803342 113826791 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067363.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113803379 113877771 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067364.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113853521 113925012 - Osbpl9 protein_coding processed_transcript MGP_C57BL6NJ_T0067365.1 MGP_C57BL6NJ_G0028989.1 mouse_genomes_project 4 113894182 113925010 - Osbpl9 protein_coding retained_intron MGP_C57BL6NJ_T0067247.1 MGP_C57BL6NJ_G0028968.1 mouse_genomes_project 4 112577415 112625400 + MGP_C57BL6NJ_P0067247 Slc1a7 protein_coding protein_coding MGP_C57BL6NJ_T0067248.1 MGP_C57BL6NJ_G0028968.1 mouse_genomes_project 4 112620799 112625394 + Slc1a7 protein_coding retained_intron MGP_C57BL6NJ_T0066149.1 MGP_C57BL6NJ_G0028701.1 mouse_genomes_project 4 49699693 49715594 - MGP_C57BL6NJ_P0066149 Baat protein_coding protein_coding MGP_C57BL6NJ_T0066150.1 MGP_C57BL6NJ_G0028701.1 mouse_genomes_project 4 49700091 49709953 - MGP_C57BL6NJ_P0066150 Baat protein_coding protein_coding MGP_C57BL6NJ_T0014950.1 MGP_C57BL6NJ_G0012995.1 mouse_genomes_project 4 71437420 71438158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001566.1 MGP_C57BL6NJ_G0001465.1 mouse_genomes_project 4 161589663 161590085 - TEC TEC MGP_C57BL6NJ_T0010863.1 MGP_C57BL6NJ_G0008948.1 mouse_genomes_project 4 131162500 131162609 + Mir698 miRNA miRNA MGP_C57BL6NJ_T0004705.1 MGP_C57BL6NJ_G0004080.1 mouse_genomes_project 4 137649693 137650403 - Gm12970 antisense antisense MGP_C57BL6NJ_T0004767.1 MGP_C57BL6NJ_G0004130.1 mouse_genomes_project 4 163999582 164004457 + Trp73os antisense antisense MGP_C57BL6NJ_T0067225.1 MGP_C57BL6NJ_G0028965.1 mouse_genomes_project 4 112472574 112480964 + MGP_C57BL6NJ_P0067225 Magoh protein_coding protein_coding MGP_C57BL6NJ_T0067226.1 MGP_C57BL6NJ_G0028965.1 mouse_genomes_project 4 112475810 112480927 + Magoh protein_coding processed_transcript MGP_C57BL6NJ_T0067810.1 MGP_C57BL6NJ_G0029082.1 mouse_genomes_project 4 123471297 123474687 - MGP_C57BL6NJ_P0067810 Dph2 protein_coding protein_coding MGP_C57BL6NJ_T0067811.1 MGP_C57BL6NJ_G0029082.1 mouse_genomes_project 4 123471561 123474675 - Dph2 protein_coding retained_intron MGP_C57BL6NJ_T0067812.1 MGP_C57BL6NJ_G0029082.1 mouse_genomes_project 4 123471570 123474678 - MGP_C57BL6NJ_P0067812 Dph2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067813.1 MGP_C57BL6NJ_G0029082.1 mouse_genomes_project 4 123473732 123474641 - Dph2 protein_coding retained_intron MGP_C57BL6NJ_T0101647.1 MGP_C57BL6NJ_G0039693.1 mouse_genomes_project 4 32789131 32789218 + Gm22010 snoRNA snoRNA MGP_C57BL6NJ_T0004672.1 MGP_C57BL6NJ_G0004054.1 mouse_genomes_project 4 122298615 122304316 + Gm12996 antisense antisense MGP_C57BL6NJ_T0067658.1 MGP_C57BL6NJ_G0029055.1 mouse_genomes_project 4 122169519 122176286 - MGP_C57BL6NJ_P0067658 Mmachc protein_coding protein_coding MGP_C57BL6NJ_T0067659.1 MGP_C57BL6NJ_G0029055.1 mouse_genomes_project 4 122171629 122176168 - Mmachc protein_coding processed_transcript MGP_C57BL6NJ_T0070418.1 MGP_C57BL6NJ_G0029683.1 mouse_genomes_project 4 166311525 166322616 + MGP_C57BL6NJ_P0070418 Noc2l protein_coding protein_coding MGP_C57BL6NJ_T0070419.1 MGP_C57BL6NJ_G0029683.1 mouse_genomes_project 4 166311566 166322603 + MGP_C57BL6NJ_P0070419 Noc2l protein_coding protein_coding MGP_C57BL6NJ_T0067540.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206852 121248017 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067541.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206852 121248017 + MGP_C57BL6NJ_P0067541 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067542.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206875 121232197 + MGP_C57BL6NJ_P0067542 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067543.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206877 121242637 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067544.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206887 121216234 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067545.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206887 121248017 + MGP_C57BL6NJ_P0067545 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067546.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206889 121234164 + MGP_C57BL6NJ_P0067546 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067547.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206894 121232234 + MGP_C57BL6NJ_P0067547 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067548.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206898 121224752 + MGP_C57BL6NJ_P0067548 Mknk1 protein_coding protein_coding MGP_C57BL6NJ_T0067549.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121206914 121230893 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067550.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121224686 121247431 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067551.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121224760 121245377 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067552.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121233898 121234959 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0067553.1 MGP_C57BL6NJ_G0029033.1 mouse_genomes_project 4 121243537 121245819 + Mknk1 protein_coding processed_transcript MGP_C57BL6NJ_T0065885.1 MGP_C57BL6NJ_G0028644.1 mouse_genomes_project 4 43563311 43565573 - MGP_C57BL6NJ_P0065885 Olfr157 protein_coding protein_coding MGP_C57BL6NJ_T0018529.1 MGP_C57BL6NJ_G0015949.1 mouse_genomes_project 4 98121157 98138742 - Gm12655 processed_transcript processed_transcript MGP_C57BL6NJ_T0018530.1 MGP_C57BL6NJ_G0015949.1 mouse_genomes_project 4 98122245 98138729 - Gm12655 processed_transcript processed_transcript MGP_C57BL6NJ_T0014752.1 MGP_C57BL6NJ_G0012797.1 mouse_genomes_project 4 7854553 7855739 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103142.1 MGP_C57BL6NJ_G0040936.1 mouse_genomes_project 4 91829717 91840934 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0068696.1 MGP_C57BL6NJ_G0029287.1 mouse_genomes_project 4 139059529 139097815 - MGP_C57BL6NJ_P0068696 Oprd1 protein_coding protein_coding MGP_C57BL6NJ_T0068042.1 MGP_C57BL6NJ_G0029141.1 mouse_genomes_project 4 126837197 126856740 - MGP_C57BL6NJ_P0068042 Zfp69 protein_coding protein_coding MGP_C57BL6NJ_T0068043.1 MGP_C57BL6NJ_G0029141.1 mouse_genomes_project 4 126837413 126854475 - MGP_C57BL6NJ_P0068043 Zfp69 protein_coding protein_coding MGP_C57BL6NJ_T0068044.1 MGP_C57BL6NJ_G0029141.1 mouse_genomes_project 4 126838366 126852854 - MGP_C57BL6NJ_P0068044 Zfp69 protein_coding protein_coding MGP_C57BL6NJ_T0068045.1 MGP_C57BL6NJ_G0029141.1 mouse_genomes_project 4 126838367 126841747 - Zfp69 protein_coding retained_intron MGP_C57BL6NJ_T0067086.1 MGP_C57BL6NJ_G0028942.1 mouse_genomes_project 4 111058497 111090420 + MGP_C57BL6NJ_P0067086 Dhcr24 protein_coding protein_coding MGP_C57BL6NJ_T0101715.1 MGP_C57BL6NJ_G0039761.1 mouse_genomes_project 4 139347770 139347975 - Snora73b snoRNA snoRNA MGP_C57BL6NJ_T0014835.1 MGP_C57BL6NJ_G0012880.1 mouse_genomes_project 4 30605934 30606364 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015156.1 MGP_C57BL6NJ_G0013201.1 mouse_genomes_project 4 141617518 141617779 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014765.1 MGP_C57BL6NJ_G0012810.1 mouse_genomes_project 4 10657347 10657719 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015003.1 MGP_C57BL6NJ_G0013048.1 mouse_genomes_project 4 91857884 91858520 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015079.1 MGP_C57BL6NJ_G0013124.1 mouse_genomes_project 4 117098486 117098828 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015001.1 MGP_C57BL6NJ_G0013046.1 mouse_genomes_project 4 91272106 91272344 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068351.1 MGP_C57BL6NJ_G0029220.1 mouse_genomes_project 4 133968205 133970824 - MGP_C57BL6NJ_P0068351 Gja4 protein_coding protein_coding MGP_C57BL6NJ_T0066740.1 MGP_C57BL6NJ_G0028849.1 mouse_genomes_project 4 91993689 91997866 - MGP_C57BL6NJ_P0066740 Klhl9 protein_coding protein_coding MGP_C57BL6NJ_T0010884.1 MGP_C57BL6NJ_G0008969.1 mouse_genomes_project 4 146054064 146054133 - Mir7019 miRNA miRNA MGP_C57BL6NJ_T0100406.1 MGP_C57BL6NJ_G0038452.1 mouse_genomes_project 4 146361144 146361250 - Gm22961 snRNA snRNA MGP_C57BL6NJ_T0102497.1 MGP_C57BL6NJ_G0040366.1 mouse_genomes_project 4 41345044 42154795 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0004620.1 MGP_C57BL6NJ_G0004018.1 mouse_genomes_project 4 60859079 60864020 - Gm12542 antisense antisense MGP_C57BL6NJ_T0065241.1 MGP_C57BL6NJ_G0028491.1 mouse_genomes_project 4 16951248 17193576 + MGP_C57BL6NJ_P0065241 Cngb3 protein_coding protein_coding MGP_C57BL6NJ_T0015179.1 MGP_C57BL6NJ_G0013224.1 mouse_genomes_project 4 151486056 151487401 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008029.1 MGP_C57BL6NJ_G0006563.1 mouse_genomes_project 4 56284771 56320895 + Gm12506 lincRNA lincRNA MGP_C57BL6NJ_T0068151.1 MGP_C57BL6NJ_G0029174.1 mouse_genomes_project 4 131088507 131105937 - MGP_C57BL6NJ_P0068151 Utp11l protein_coding protein_coding MGP_C57BL6NJ_T0068152.1 MGP_C57BL6NJ_G0029174.1 mouse_genomes_project 4 131089144 131105871 - Utp11l protein_coding processed_transcript MGP_C57BL6NJ_T0065894.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43751724 43779934 + MGP_C57BL6NJ_P0065894 Clta protein_coding protein_coding MGP_C57BL6NJ_T0065895.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43759731 43779934 + MGP_C57BL6NJ_P0065895 Clta protein_coding protein_coding MGP_C57BL6NJ_T0065896.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43759736 43779933 + MGP_C57BL6NJ_P0065896 Clta protein_coding protein_coding MGP_C57BL6NJ_T0065897.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43759771 43779934 + MGP_C57BL6NJ_P0065897 Clta protein_coding protein_coding MGP_C57BL6NJ_T0065898.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43759771 43779934 + MGP_C57BL6NJ_P0065898 Clta protein_coding protein_coding MGP_C57BL6NJ_T0065899.1 MGP_C57BL6NJ_G0028649.1 mouse_genomes_project 4 43759779 43779934 + MGP_C57BL6NJ_P0065899 Clta protein_coding protein_coding MGP_C57BL6NJ_T0068819.1 MGP_C57BL6NJ_G0029314.1 mouse_genomes_project 4 140358902 140368926 - MGP_C57BL6NJ_P0068819 Sytl1 protein_coding protein_coding MGP_C57BL6NJ_T0068820.1 MGP_C57BL6NJ_G0029314.1 mouse_genomes_project 4 140358902 140368900 - MGP_C57BL6NJ_P0068820 Sytl1 protein_coding protein_coding MGP_C57BL6NJ_T0068821.1 MGP_C57BL6NJ_G0029314.1 mouse_genomes_project 4 140358910 140368900 - Sytl1 protein_coding processed_transcript MGP_C57BL6NJ_T0068822.1 MGP_C57BL6NJ_G0029314.1 mouse_genomes_project 4 140358972 140368865 - Sytl1 protein_coding processed_transcript MGP_C57BL6NJ_T0004670.1 MGP_C57BL6NJ_G0004052.1 mouse_genomes_project 4 121247083 121247343 - Gm29434 antisense antisense MGP_C57BL6NJ_T0014764.1 MGP_C57BL6NJ_G0012809.1 mouse_genomes_project 4 9254451 9254876 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014733.1 MGP_C57BL6NJ_G0012778.1 mouse_genomes_project 4 299940 300540 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018532.1 MGP_C57BL6NJ_G0015951.1 mouse_genomes_project 4 99188954 99213369 - Gm830 processed_transcript processed_transcript MGP_C57BL6NJ_T0069328.1 MGP_C57BL6NJ_G0029434.1 mouse_genomes_project 4 146893990 146908360 - MGP_C57BL6NJ_P0069328 Htr6 protein_coding protein_coding MGP_C57BL6NJ_T0069329.1 MGP_C57BL6NJ_G0029434.1 mouse_genomes_project 4 146894291 146907579 - MGP_C57BL6NJ_P0069329 Htr6 protein_coding protein_coding MGP_C57BL6NJ_T0069180.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144201635 144396884 - MGP_C57BL6NJ_P0069180 Ephb2 protein_coding protein_coding MGP_C57BL6NJ_T0069181.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144207704 144396852 - MGP_C57BL6NJ_P0069181 Ephb2 protein_coding protein_coding MGP_C57BL6NJ_T0069182.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144208742 144396739 - MGP_C57BL6NJ_P0069182 Ephb2 protein_coding protein_coding MGP_C57BL6NJ_T0069183.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144214952 144216918 - Ephb2 protein_coding retained_intron MGP_C57BL6NJ_T0069184.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144216728 144249057 - MGP_C57BL6NJ_P0069184 Ephb2 protein_coding protein_coding MGP_C57BL6NJ_T0069185.1 MGP_C57BL6NJ_G0029396.1 mouse_genomes_project 4 144328968 144396870 - Ephb2 protein_coding retained_intron MGP_C57BL6NJ_T0014949.1 MGP_C57BL6NJ_G0012994.1 mouse_genomes_project 4 71276795 71277392 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068777.1 MGP_C57BL6NJ_G0029304.1 mouse_genomes_project 4 139841485 139857292 - MGP_C57BL6NJ_P0068777 Themis2 protein_coding protein_coding MGP_C57BL6NJ_T0010835.1 MGP_C57BL6NJ_G0008920.1 mouse_genomes_project 4 57649208 57649278 - Mir32 miRNA miRNA MGP_C57BL6NJ_T0065253.1 MGP_C57BL6NJ_G0028498.1 mouse_genomes_project 4 17714886 17730106 + MGP_C57BL6NJ_P0065253 Ttpa protein_coding protein_coding MGP_C57BL6NJ_T0065254.1 MGP_C57BL6NJ_G0028498.1 mouse_genomes_project 4 17715388 17738668 + MGP_C57BL6NJ_P0065254 Ttpa protein_coding protein_coding MGP_C57BL6NJ_T0100402.1 MGP_C57BL6NJ_G0038448.1 mouse_genomes_project 4 141085534 141085634 - Gm22523 snRNA snRNA MGP_C57BL6NJ_T0066365.1 MGP_C57BL6NJ_G0028761.1 mouse_genomes_project 4 60770478 60873833 + MGP_C57BL6NJ_P0066365 Snx30 protein_coding protein_coding MGP_C57BL6NJ_T0066366.1 MGP_C57BL6NJ_G0028761.1 mouse_genomes_project 4 60770518 60800319 + Snx30 protein_coding processed_transcript MGP_C57BL6NJ_T0066367.1 MGP_C57BL6NJ_G0028761.1 mouse_genomes_project 4 60853787 60869629 + Snx30 protein_coding processed_transcript MGP_C57BL6NJ_T0066368.1 MGP_C57BL6NJ_G0028761.1 mouse_genomes_project 4 60853873 60863650 + Snx30 protein_coding processed_transcript MGP_C57BL6NJ_T0069523.1 MGP_C57BL6NJ_G0029477.1 mouse_genomes_project 4 149736816 149741596 - MGP_C57BL6NJ_P0069523 Slc25a34 protein_coding protein_coding MGP_C57BL6NJ_T0015073.1 MGP_C57BL6NJ_G0013118.1 mouse_genomes_project 4 115324875 115325837 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014864.1 MGP_C57BL6NJ_G0012909.1 mouse_genomes_project 4 39036192 39036987 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004729.1 MGP_C57BL6NJ_G0004101.1 mouse_genomes_project 4 149335759 149341408 - Gm13055 antisense antisense MGP_C57BL6NJ_T0069186.1 MGP_C57BL6NJ_G0029397.1 mouse_genomes_project 4 144448988 144454906 - MGP_C57BL6NJ_P0069186 C1qb protein_coding protein_coding MGP_C57BL6NJ_T0014882.1 MGP_C57BL6NJ_G0012927.1 mouse_genomes_project 4 46183219 46184096 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066152.1 MGP_C57BL6NJ_G0028703.1 mouse_genomes_project 4 49731947 49742966 + MGP_C57BL6NJ_P0066152 Zfp189 protein_coding protein_coding MGP_C57BL6NJ_T0066153.1 MGP_C57BL6NJ_G0028703.1 mouse_genomes_project 4 49731988 49742966 + MGP_C57BL6NJ_P0066153 Zfp189 protein_coding protein_coding MGP_C57BL6NJ_T0014847.1 MGP_C57BL6NJ_G0012892.1 mouse_genomes_project 4 33185249 33186060 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065900.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43781162 43832242 - MGP_C57BL6NJ_P0065900 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065901.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43783897 43802388 - MGP_C57BL6NJ_P0065901 Gne protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065902.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43783913 43819077 - MGP_C57BL6NJ_P0065902 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065903.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43783917 43813272 - MGP_C57BL6NJ_P0065903 Gne protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065904.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43784045 43813312 - MGP_C57BL6NJ_P0065904 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065905.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43793045 43818923 - MGP_C57BL6NJ_P0065905 Gne protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065906.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43799965 43813413 - MGP_C57BL6NJ_P0065906 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065907.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43802395 43810266 - Gne protein_coding retained_intron MGP_C57BL6NJ_T0065908.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43806790 43832232 - Gne protein_coding retained_intron MGP_C57BL6NJ_T0065909.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43806958 43831988 - MGP_C57BL6NJ_P0065909 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065910.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43807062 43819035 - Gne protein_coding processed_transcript MGP_C57BL6NJ_T0065911.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43807081 43818901 - MGP_C57BL6NJ_P0065911 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065912.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43807193 43819316 - MGP_C57BL6NJ_P0065912 Gne protein_coding protein_coding MGP_C57BL6NJ_T0065913.1 MGP_C57BL6NJ_G0028650.1 mouse_genomes_project 4 43807202 43819317 - MGP_C57BL6NJ_P0065913 Gne protein_coding protein_coding MGP_C57BL6NJ_T0066835.1 MGP_C57BL6NJ_G0028879.1 mouse_genomes_project 4 99776793 99804296 - MGP_C57BL6NJ_P0066835 Cyp2j13 protein_coding protein_coding MGP_C57BL6NJ_T0066836.1 MGP_C57BL6NJ_G0028879.1 mouse_genomes_project 4 99791983 99821880 - MGP_C57BL6NJ_P0066836 Cyp2j13 protein_coding protein_coding MGP_C57BL6NJ_T0066837.1 MGP_C57BL6NJ_G0028879.1 mouse_genomes_project 4 99794554 99821886 - MGP_C57BL6NJ_P0066837 Cyp2j13 protein_coding protein_coding MGP_C57BL6NJ_T0066838.1 MGP_C57BL6NJ_G0028879.1 mouse_genomes_project 4 99794554 99821864 - MGP_C57BL6NJ_P0066838 Cyp2j13 protein_coding protein_coding MGP_C57BL6NJ_T0100411.1 MGP_C57BL6NJ_G0038457.1 mouse_genomes_project 4 157804776 157804880 + Gm24002 snRNA snRNA MGP_C57BL6NJ_T0010819.1 MGP_C57BL6NJ_G0008904.1 mouse_genomes_project 4 29244308 29244417 - Gm22831 miRNA miRNA MGP_C57BL6NJ_T0101656.1 MGP_C57BL6NJ_G0039702.1 mouse_genomes_project 4 46468495 46468626 + Gm22247 snoRNA snoRNA MGP_C57BL6NJ_T0066193.1 MGP_C57BL6NJ_G0028717.1 mouse_genomes_project 4 53515101 53530517 + MGP_C57BL6NJ_P0066193 Nipsnap3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066194.1 MGP_C57BL6NJ_G0028717.1 mouse_genomes_project 4 53515113 53530524 + MGP_C57BL6NJ_P0066194 Nipsnap3a protein_coding protein_coding MGP_C57BL6NJ_T0066195.1 MGP_C57BL6NJ_G0028717.1 mouse_genomes_project 4 53515247 53530832 + MGP_C57BL6NJ_P0066195 Nipsnap3a protein_coding protein_coding MGP_C57BL6NJ_T0066196.1 MGP_C57BL6NJ_G0028717.1 mouse_genomes_project 4 53529933 53530516 + Nipsnap3a protein_coding retained_intron MGP_C57BL6NJ_T0018517.1 MGP_C57BL6NJ_G0015941.1 mouse_genomes_project 4 58582384 58589959 - Gm12526 processed_transcript processed_transcript MGP_C57BL6NJ_T0099451.1 MGP_C57BL6NJ_G0037508.1 mouse_genomes_project 4 142800052 142800768 - Gm15979 sense_intronic sense_intronic MGP_C57BL6NJ_T0065380.1 MGP_C57BL6NJ_G0028524.1 mouse_genomes_project 4 31459504 31460635 + MGP_C57BL6NJ_P0065380 Lyrm2 protein_coding protein_coding MGP_C57BL6NJ_T0065381.1 MGP_C57BL6NJ_G0028524.1 mouse_genomes_project 4 31459530 31460811 + Lyrm2 protein_coding retained_intron MGP_C57BL6NJ_T0065382.1 MGP_C57BL6NJ_G0028524.1 mouse_genomes_project 4 31459533 31460227 + Lyrm2 protein_coding retained_intron MGP_C57BL6NJ_T0066223.1 MGP_C57BL6NJ_G0028725.1 mouse_genomes_project 4 55552319 55615621 + MGP_C57BL6NJ_P0066223 protein_coding protein_coding MGP_C57BL6NJ_T0066224.1 MGP_C57BL6NJ_G0028725.1 mouse_genomes_project 4 55614022 55692056 + MGP_C57BL6NJ_P0066224 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066225.1 MGP_C57BL6NJ_G0028725.1 mouse_genomes_project 4 55618672 55692541 + MGP_C57BL6NJ_P0066225 protein_coding protein_coding MGP_C57BL6NJ_T0066226.1 MGP_C57BL6NJ_G0028725.1 mouse_genomes_project 4 55618786 55692513 + MGP_C57BL6NJ_P0066226 protein_coding protein_coding MGP_C57BL6NJ_T0066448.1 MGP_C57BL6NJ_G0028785.1 mouse_genomes_project 4 64486864 64491947 + MGP_C57BL6NJ_P0066448 Orm1 protein_coding protein_coding MGP_C57BL6NJ_T0067710.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122606410 122625705 + MGP_C57BL6NJ_P0067710 Ptch2 protein_coding protein_coding MGP_C57BL6NJ_T0067711.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122606431 122625705 + MGP_C57BL6NJ_P0067711 Ptch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067712.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122615255 122616649 + Ptch2 protein_coding retained_intron MGP_C57BL6NJ_T0067713.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122615573 122618864 + MGP_C57BL6NJ_P0067713 Ptch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067714.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122620584 122621438 + Ptch2 protein_coding retained_intron MGP_C57BL6NJ_T0067715.1 MGP_C57BL6NJ_G0029065.1 mouse_genomes_project 4 122623745 122626423 + Ptch2 protein_coding retained_intron MGP_C57BL6NJ_T0014849.1 MGP_C57BL6NJ_G0012894.1 mouse_genomes_project 4 33264690 33264982 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067521.1 MGP_C57BL6NJ_G0029028.1 mouse_genomes_project 4 120976159 120998279 - MGP_C57BL6NJ_P0067521 Cyp4b1 protein_coding protein_coding MGP_C57BL6NJ_T0067522.1 MGP_C57BL6NJ_G0029028.1 mouse_genomes_project 4 120976159 120989912 - MGP_C57BL6NJ_P0067522 Cyp4b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067523.1 MGP_C57BL6NJ_G0029028.1 mouse_genomes_project 4 120977762 120991383 - MGP_C57BL6NJ_P0067523 Cyp4b1 protein_coding protein_coding MGP_C57BL6NJ_T0067524.1 MGP_C57BL6NJ_G0029028.1 mouse_genomes_project 4 120980513 120983850 - Cyp4b1 protein_coding retained_intron MGP_C57BL6NJ_T0065449.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595674 33605380 - MGP_C57BL6NJ_P0065449 Smim8 protein_coding protein_coding MGP_C57BL6NJ_T0065450.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595674 33605395 - MGP_C57BL6NJ_P0065450 Smim8 protein_coding protein_coding MGP_C57BL6NJ_T0065451.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595674 33605454 - MGP_C57BL6NJ_P0065451 Smim8 protein_coding protein_coding MGP_C57BL6NJ_T0065452.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595674 33605368 - MGP_C57BL6NJ_P0065452 Smim8 protein_coding protein_coding MGP_C57BL6NJ_T0065453.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595674 33605301 - MGP_C57BL6NJ_P0065453 Smim8 protein_coding protein_coding MGP_C57BL6NJ_T0065454.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33595685 33605362 - Smim8 protein_coding processed_transcript MGP_C57BL6NJ_T0065455.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33597898 33605386 - Smim8 protein_coding retained_intron MGP_C57BL6NJ_T0065456.1 MGP_C57BL6NJ_G0028543.1 mouse_genomes_project 4 33598256 33605249 - Smim8 protein_coding processed_transcript MGP_C57BL6NJ_T0014751.1 MGP_C57BL6NJ_G0012796.1 mouse_genomes_project 4 7597000 7597291 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066716.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91322582 91352704 + Focad protein_coding retained_intron MGP_C57BL6NJ_T0066717.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91322583 91653213 + MGP_C57BL6NJ_P0066717 Focad protein_coding protein_coding MGP_C57BL6NJ_T0066718.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91322598 91417650 + Focad protein_coding retained_intron MGP_C57BL6NJ_T0066719.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91352190 91653211 + MGP_C57BL6NJ_P0066719 Focad protein_coding protein_coding MGP_C57BL6NJ_T0066720.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91355387 91386023 + Focad protein_coding retained_intron MGP_C57BL6NJ_T0066721.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91541569 91567004 + Focad protein_coding retained_intron MGP_C57BL6NJ_T0066722.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91586997 91653216 + Focad protein_coding retained_intron MGP_C57BL6NJ_T0066724.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91641448 91649426 + Focad protein_coding processed_transcript MGP_C57BL6NJ_T0066725.1 MGP_C57BL6NJ_G0028839.1 mouse_genomes_project 4 91641663 91653218 + MGP_C57BL6NJ_P0066725 Focad protein_coding protein_coding MGP_C57BL6NJ_T0008076.1 MGP_C57BL6NJ_G0006603.1 mouse_genomes_project 4 103604764 103608276 + Gm12690 lincRNA lincRNA MGP_C57BL6NJ_T0014994.1 MGP_C57BL6NJ_G0013039.1 mouse_genomes_project 4 87630541 87631589 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069959.1 MGP_C57BL6NJ_G0029595.1 mouse_genomes_project 4 161662904 161669253 - MGP_C57BL6NJ_P0069959 Thap3 protein_coding protein_coding MGP_C57BL6NJ_T0069960.1 MGP_C57BL6NJ_G0029595.1 mouse_genomes_project 4 161663067 161669226 - MGP_C57BL6NJ_P0069960 Thap3 protein_coding protein_coding MGP_C57BL6NJ_T0069961.1 MGP_C57BL6NJ_G0029595.1 mouse_genomes_project 4 161665724 161669236 - Thap3 protein_coding retained_intron MGP_C57BL6NJ_T0001554.1 MGP_C57BL6NJ_G0001454.1 mouse_genomes_project 4 125056924 125057358 - TEC TEC MGP_C57BL6NJ_T0066579.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85116714 85333697 - MGP_C57BL6NJ_P0066579 Nfib protein_coding protein_coding MGP_C57BL6NJ_T0066580.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85146788 85334247 - Nfib protein_coding retained_intron MGP_C57BL6NJ_T0066581.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85148557 85334247 - Nfib protein_coding retained_intron MGP_C57BL6NJ_T0066582.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85173791 85334701 - Nfib protein_coding retained_intron MGP_C57BL6NJ_T0066583.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85324938 85334716 - Nfib protein_coding retained_intron MGP_C57BL6NJ_T0066584.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85327275 85537177 - MGP_C57BL6NJ_P0066584 Nfib protein_coding protein_coding MGP_C57BL6NJ_T0066585.1 MGP_C57BL6NJ_G0028818.1 mouse_genomes_project 4 85327498 85328271 - Nfib protein_coding processed_transcript MGP_C57BL6NJ_T0068358.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 134706662 135088645 + Csmd2 protein_coding processed_transcript MGP_C57BL6NJ_T0068359.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 134706756 135172201 + Csmd2 protein_coding retained_intron MGP_C57BL6NJ_T0068360.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 134706782 135321707 + MGP_C57BL6NJ_P0068360 Csmd2 protein_coding protein_coding MGP_C57BL6NJ_T0068362.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 135223673 135251450 + Csmd2 protein_coding processed_transcript MGP_C57BL6NJ_T0068363.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 135273229 135282370 + Csmd2 protein_coding processed_transcript MGP_C57BL6NJ_T0068364.1 MGP_C57BL6NJ_G0029225.1 mouse_genomes_project 4 135301993 135306791 + Csmd2 protein_coding processed_transcript MGP_C57BL6NJ_T0068219.1 MGP_C57BL6NJ_G0029193.1 mouse_genomes_project 4 132584190 132621774 + MGP_C57BL6NJ_P0068219 Oscp1 protein_coding protein_coding MGP_C57BL6NJ_T0068220.1 MGP_C57BL6NJ_G0029193.1 mouse_genomes_project 4 132584306 132618017 + MGP_C57BL6NJ_P0068220 Oscp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068221.1 MGP_C57BL6NJ_G0029193.1 mouse_genomes_project 4 132590341 132618020 + Oscp1 protein_coding processed_transcript MGP_C57BL6NJ_T0068222.1 MGP_C57BL6NJ_G0029193.1 mouse_genomes_project 4 132612512 132614008 + Oscp1 protein_coding processed_transcript MGP_C57BL6NJ_T0068223.1 MGP_C57BL6NJ_G0029193.1 mouse_genomes_project 4 132617257 132618238 + Oscp1 protein_coding processed_transcript MGP_C57BL6NJ_T0068852.1 MGP_C57BL6NJ_G0029324.1 mouse_genomes_project 4 140726460 140733834 + MGP_C57BL6NJ_P0068852 Gpn2 protein_coding protein_coding MGP_C57BL6NJ_T0068853.1 MGP_C57BL6NJ_G0029324.1 mouse_genomes_project 4 140726517 140733589 + MGP_C57BL6NJ_P0068853 Gpn2 protein_coding protein_coding MGP_C57BL6NJ_T0068854.1 MGP_C57BL6NJ_G0029324.1 mouse_genomes_project 4 140726526 140728280 + Gpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0101695.1 MGP_C57BL6NJ_G0039741.1 mouse_genomes_project 4 122678832 122678936 - Gm26330 snoRNA snoRNA MGP_C57BL6NJ_T0015005.1 MGP_C57BL6NJ_G0013050.1 mouse_genomes_project 4 92756302 92758730 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065665.1 MGP_C57BL6NJ_G0028608.1 mouse_genomes_project 4 42445237 42446715 - MGP_C57BL6NJ_P0065665 protein_coding protein_coding MGP_C57BL6NJ_T0068916.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340655 141367131 + MGP_C57BL6NJ_P0068916 Ubxn11 protein_coding protein_coding MGP_C57BL6NJ_T0068917.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340660 141365539 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068918.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340693 141366148 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068919.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340705 141367149 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068920.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340708 141356506 + MGP_C57BL6NJ_P0068920 Ubxn11 protein_coding protein_coding MGP_C57BL6NJ_T0068921.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141340709 141350574 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068922.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141348728 141353326 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068923.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141352906 141363972 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068924.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141363842 141367148 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0068925.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141364424 141366874 + MGP_C57BL6NJ_P0068925 Ubxn11 protein_coding protein_coding MGP_C57BL6NJ_T0068926.1 MGP_C57BL6NJ_G0029336.1 mouse_genomes_project 4 141366300 141367149 + Ubxn11 protein_coding processed_transcript MGP_C57BL6NJ_T0101631.1 MGP_C57BL6NJ_G0039677.1 mouse_genomes_project 4 169785 169912 + Gm22541 snoRNA snoRNA MGP_C57BL6NJ_T0015153.1 MGP_C57BL6NJ_G0013198.1 mouse_genomes_project 4 140390105 140390561 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066013.1 MGP_C57BL6NJ_G0028666.1 mouse_genomes_project 4 45698748 45704331 + MGP_C57BL6NJ_P0066013 Aldh1b1 protein_coding protein_coding MGP_C57BL6NJ_T0066014.1 MGP_C57BL6NJ_G0028666.1 mouse_genomes_project 4 45698847 45702585 + MGP_C57BL6NJ_P0066014 Aldh1b1 protein_coding protein_coding MGP_C57BL6NJ_T0018545.1 MGP_C57BL6NJ_G0015960.1 mouse_genomes_project 4 120142295 120157394 + Foxd2os processed_transcript processed_transcript MGP_C57BL6NJ_T0018546.1 MGP_C57BL6NJ_G0015960.1 mouse_genomes_project 4 120142295 120156285 + Foxd2os processed_transcript processed_transcript MGP_C57BL6NJ_T0011839.1 MGP_C57BL6NJ_G0009924.1 mouse_genomes_project 4 113883073 113883347 - Gm23743 misc_RNA misc_RNA MGP_C57BL6NJ_T0100373.1 MGP_C57BL6NJ_G0038419.1 mouse_genomes_project 4 112656478 112656582 - Gm23354 snRNA snRNA MGP_C57BL6NJ_T0008148.1 MGP_C57BL6NJ_G0006653.1 mouse_genomes_project 4 137619309 137621096 + Gm12972 lincRNA lincRNA MGP_C57BL6NJ_T0100362.1 MGP_C57BL6NJ_G0038408.1 mouse_genomes_project 4 89539763 89539837 + Gm26017 snRNA snRNA MGP_C57BL6NJ_T0005784.1 MGP_C57BL6NJ_G0004869.1 mouse_genomes_project 4 112385773 112394569 - Lrp8os3 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0066843.1 MGP_C57BL6NJ_G0028883.1 mouse_genomes_project 4 100227656 100292863 - MGP_C57BL6NJ_P0066843 Cyp2j8 protein_coding protein_coding MGP_C57BL6NJ_T0004718.1 MGP_C57BL6NJ_G0004092.1 mouse_genomes_project 4 145357523 145367383 - Rap1gapos antisense antisense MGP_C57BL6NJ_T0014840.1 MGP_C57BL6NJ_G0012885.1 mouse_genomes_project 4 31302986 31303146 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067556.1 MGP_C57BL6NJ_G0029035.1 mouse_genomes_project 4 121259422 121267977 + MGP_C57BL6NJ_P0067556 6430628N08Rik protein_coding protein_coding MGP_C57BL6NJ_T0066728.1 MGP_C57BL6NJ_G0028841.1 mouse_genomes_project 4 91769659 91770409 - MGP_C57BL6NJ_P0066728 Ifnb1 protein_coding protein_coding MGP_C57BL6NJ_T0004676.1 MGP_C57BL6NJ_G0004057.1 mouse_genomes_project 4 122993160 123003176 + Gm12828 antisense antisense MGP_C57BL6NJ_T0010821.1 MGP_C57BL6NJ_G0008906.1 mouse_genomes_project 4 35658699 35658780 - Mir876 miRNA miRNA MGP_C57BL6NJ_T0066845.1 MGP_C57BL6NJ_G0028885.1 mouse_genomes_project 4 100352603 100382456 - MGP_C57BL6NJ_P0066845 Cyp2j9 protein_coding protein_coding MGP_C57BL6NJ_T0066846.1 MGP_C57BL6NJ_G0028885.1 mouse_genomes_project 4 100363205 100382456 - Cyp2j9 protein_coding retained_intron MGP_C57BL6NJ_T0101644.1 MGP_C57BL6NJ_G0039690.1 mouse_genomes_project 4 23611641 23611766 - Gm25975 snoRNA snoRNA MGP_C57BL6NJ_T0068058.1 MGP_C57BL6NJ_G0029147.1 mouse_genomes_project 4 127234991 127243545 - MGP_C57BL6NJ_P0068058 Gm12888 protein_coding protein_coding MGP_C57BL6NJ_T0068754.1 MGP_C57BL6NJ_G0029299.1 mouse_genomes_project 4 139603109 139623059 + MGP_C57BL6NJ_P0068754 Ptafr protein_coding protein_coding MGP_C57BL6NJ_T0069482.1 MGP_C57BL6NJ_G0029469.1 mouse_genomes_project 4 149467604 149481140 - MGP_C57BL6NJ_P0069482 Clcnka protein_coding protein_coding MGP_C57BL6NJ_T0069483.1 MGP_C57BL6NJ_G0029469.1 mouse_genomes_project 4 149467604 149481660 - MGP_C57BL6NJ_P0069483 Clcnka protein_coding protein_coding MGP_C57BL6NJ_T0069484.1 MGP_C57BL6NJ_G0029469.1 mouse_genomes_project 4 149474331 149477763 - Clcnka protein_coding retained_intron MGP_C57BL6NJ_T0069485.1 MGP_C57BL6NJ_G0029469.1 mouse_genomes_project 4 149478054 149481510 - MGP_C57BL6NJ_P0069485 Clcnka protein_coding protein_coding MGP_C57BL6NJ_T0014745.1 MGP_C57BL6NJ_G0012790.1 mouse_genomes_project 4 5329696 5330029 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070412.1 MGP_C57BL6NJ_G0029679.1 mouse_genomes_project 4 166274956 166276804 + MGP_C57BL6NJ_P0070412 AW011738 protein_coding protein_coding MGP_C57BL6NJ_T0103179.1 MGP_C57BL6NJ_G0040973.1 mouse_genomes_project 4 152621737 152623650 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0067093.1 MGP_C57BL6NJ_G0028945.1 mouse_genomes_project 4 111160346 111162817 + MGP_C57BL6NJ_P0067093 Pars2 protein_coding protein_coding MGP_C57BL6NJ_T0067094.1 MGP_C57BL6NJ_G0028945.1 mouse_genomes_project 4 111160375 111164558 + MGP_C57BL6NJ_P0067094 Pars2 protein_coding protein_coding MGP_C57BL6NJ_T0067095.1 MGP_C57BL6NJ_G0028945.1 mouse_genomes_project 4 111160380 111162144 + Pars2 protein_coding processed_transcript MGP_C57BL6NJ_T0067096.1 MGP_C57BL6NJ_G0028945.1 mouse_genomes_project 4 111160383 111164560 + MGP_C57BL6NJ_P0067096 Pars2 protein_coding protein_coding MGP_C57BL6NJ_T0099445.1 MGP_C57BL6NJ_G0037502.1 mouse_genomes_project 4 85420257 85422529 - Gm11267 sense_intronic sense_intronic MGP_C57BL6NJ_T0069985.1 MGP_C57BL6NJ_G0029602.1 mouse_genomes_project 4 161810367 161814553 + MGP_C57BL6NJ_P0069985 Tnfrsf25 protein_coding protein_coding MGP_C57BL6NJ_T0069986.1 MGP_C57BL6NJ_G0029602.1 mouse_genomes_project 4 161810776 161814545 + MGP_C57BL6NJ_P0069986 Tnfrsf25 protein_coding protein_coding MGP_C57BL6NJ_T0069987.1 MGP_C57BL6NJ_G0029602.1 mouse_genomes_project 4 161810832 161811420 + Tnfrsf25 protein_coding processed_transcript MGP_C57BL6NJ_T0069988.1 MGP_C57BL6NJ_G0029602.1 mouse_genomes_project 4 161812404 161813757 + Tnfrsf25 protein_coding processed_transcript MGP_C57BL6NJ_T0010901.1 MGP_C57BL6NJ_G0008986.1 mouse_genomes_project 4 166115237 166115320 - Mir429 miRNA miRNA MGP_C57BL6NJ_T0099448.1 MGP_C57BL6NJ_G0037505.1 mouse_genomes_project 4 104178944 104180165 + Gm12701 sense_intronic sense_intronic MGP_C57BL6NJ_T0068390.1 MGP_C57BL6NJ_G0029232.1 mouse_genomes_project 4 135682004 135705452 + MGP_C57BL6NJ_P0068390 Trim62 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068391.1 MGP_C57BL6NJ_G0029232.1 mouse_genomes_project 4 135682012 135714632 + MGP_C57BL6NJ_P0068391 Trim62 protein_coding protein_coding MGP_C57BL6NJ_T0014929.1 MGP_C57BL6NJ_G0012974.1 mouse_genomes_project 4 58253946 58255935 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014820.1 MGP_C57BL6NJ_G0012865.1 mouse_genomes_project 4 25811167 25811604 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070020.1 MGP_C57BL6NJ_G0029607.1 mouse_genomes_project 4 162012253 162017318 - MGP_C57BL6NJ_P0070020 Hes3 protein_coding protein_coding MGP_C57BL6NJ_T0011848.1 MGP_C57BL6NJ_G0009933.1 mouse_genomes_project 4 151590421 151590729 + Gm26313 misc_RNA misc_RNA MGP_C57BL6NJ_T0015150.1 MGP_C57BL6NJ_G0013195.1 mouse_genomes_project 4 139224217 139224538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010876.1 MGP_C57BL6NJ_G0008961.1 mouse_genomes_project 4 141871077 141871206 - Mir6403 miRNA miRNA MGP_C57BL6NJ_T0067002.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107030151 107158208 + Sgip1 protein_coding retained_intron MGP_C57BL6NJ_T0067003.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048145 107264310 + MGP_C57BL6NJ_P0067003 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067004.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048338 107151098 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067005.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048355 107264191 + MGP_C57BL6NJ_P0067005 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067006.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048362 107157190 + MGP_C57BL6NJ_P0067006 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067007.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048365 107148534 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067008.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048373 107263505 + MGP_C57BL6NJ_P0067008 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067009.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048385 107157503 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067010.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048475 107210147 + MGP_C57BL6NJ_P0067010 Sgip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067011.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107048535 107265955 + MGP_C57BL6NJ_P0067011 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067012.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107157945 107262931 + MGP_C57BL6NJ_P0067012 Sgip1 protein_coding protein_coding MGP_C57BL6NJ_T0067013.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107212331 107219776 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067014.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107218226 107219949 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0067015.1 MGP_C57BL6NJ_G0028923.1 mouse_genomes_project 4 107253389 107258946 + Sgip1 protein_coding processed_transcript MGP_C57BL6NJ_T0066508.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73877973 73961417 - MGP_C57BL6NJ_P0066508 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066509.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73878636 73961355 - MGP_C57BL6NJ_P0066509 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066510.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73878638 73961352 - MGP_C57BL6NJ_P0066510 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066511.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73878641 73959590 - Tle1 protein_coding retained_intron MGP_C57BL6NJ_T0066512.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73879036 73960650 - MGP_C57BL6NJ_P0066512 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066513.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73879051 73881566 - Tle1 protein_coding processed_transcript MGP_C57BL6NJ_T0066514.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73899365 73902091 - MGP_C57BL6NJ_P0066514 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066515.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73918353 73961360 - MGP_C57BL6NJ_P0066515 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066516.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73919045 73959990 - MGP_C57BL6NJ_P0066516 Tle1 protein_coding protein_coding MGP_C57BL6NJ_T0066517.1 MGP_C57BL6NJ_G0028805.1 mouse_genomes_project 4 73927955 73961391 - Tle1 protein_coding processed_transcript MGP_C57BL6NJ_T0014829.1 MGP_C57BL6NJ_G0012874.1 mouse_genomes_project 4 27520812 27520991 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068201.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131533499 131563673 + MGP_C57BL6NJ_P0068201 Meaf6 protein_coding protein_coding MGP_C57BL6NJ_T0068202.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131533516 131560324 + MGP_C57BL6NJ_P0068202 Meaf6 protein_coding protein_coding MGP_C57BL6NJ_T0068203.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131533529 131560149 + MGP_C57BL6NJ_P0068203 Meaf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068204.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131533530 131538526 + Meaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0068205.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131533626 131559887 + MGP_C57BL6NJ_P0068205 Meaf6 protein_coding protein_coding MGP_C57BL6NJ_T0068206.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131534553 131559892 + MGP_C57BL6NJ_P0068206 Meaf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068207.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131538263 131554105 + Meaf6 protein_coding processed_transcript MGP_C57BL6NJ_T0068208.1 MGP_C57BL6NJ_G0029188.1 mouse_genomes_project 4 131558410 131559863 + Meaf6 protein_coding retained_intron MGP_C57BL6NJ_T0070016.1 MGP_C57BL6NJ_G0029606.1 mouse_genomes_project 4 161997388 162011619 + MGP_C57BL6NJ_P0070016 Gpr153 protein_coding protein_coding MGP_C57BL6NJ_T0070017.1 MGP_C57BL6NJ_G0029606.1 mouse_genomes_project 4 161997518 162011619 + MGP_C57BL6NJ_P0070017 Gpr153 protein_coding protein_coding MGP_C57BL6NJ_T0070018.1 MGP_C57BL6NJ_G0029606.1 mouse_genomes_project 4 162005294 162011619 + MGP_C57BL6NJ_P0070018 Gpr153 protein_coding protein_coding MGP_C57BL6NJ_T0070019.1 MGP_C57BL6NJ_G0029606.1 mouse_genomes_project 4 162008651 162011618 + Gpr153 protein_coding processed_transcript MGP_C57BL6NJ_T0067725.1 MGP_C57BL6NJ_G0029067.1 mouse_genomes_project 4 122638113 122639656 + MGP_C57BL6NJ_P0067725 Tctex1d4 protein_coding protein_coding MGP_C57BL6NJ_T0067726.1 MGP_C57BL6NJ_G0029067.1 mouse_genomes_project 4 122638132 122640058 + MGP_C57BL6NJ_P0067726 Tctex1d4 protein_coding protein_coding MGP_C57BL6NJ_T0067727.1 MGP_C57BL6NJ_G0029067.1 mouse_genomes_project 4 122638493 122639835 + MGP_C57BL6NJ_P0067727 Tctex1d4 protein_coding protein_coding MGP_C57BL6NJ_T0015074.1 MGP_C57BL6NJ_G0013119.1 mouse_genomes_project 4 116185511 116187830 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014776.1 MGP_C57BL6NJ_G0012821.1 mouse_genomes_project 4 13429085 13430407 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014739.1 MGP_C57BL6NJ_G0012784.1 mouse_genomes_project 4 2790223 2790977 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015173.1 MGP_C57BL6NJ_G0013218.1 mouse_genomes_project 4 146984831 146985440 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070105.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163959095 164054973 - MGP_C57BL6NJ_P0070105 Trp73 protein_coding protein_coding MGP_C57BL6NJ_T0070106.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163961354 164003277 - MGP_C57BL6NJ_P0070106 Trp73 protein_coding protein_coding MGP_C57BL6NJ_T0070107.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163961831 164003271 - MGP_C57BL6NJ_P0070107 Trp73 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070108.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163961833 164003036 - MGP_C57BL6NJ_P0070108 Trp73 protein_coding protein_coding MGP_C57BL6NJ_T0070109.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163967287 163991389 - MGP_C57BL6NJ_P0070109 Trp73 protein_coding protein_coding MGP_C57BL6NJ_T0070110.1 MGP_C57BL6NJ_G0029621.1 mouse_genomes_project 4 163970540 164023683 - MGP_C57BL6NJ_P0070110 Trp73 protein_coding protein_coding MGP_C57BL6NJ_T0069002.1 MGP_C57BL6NJ_G0029355.1 mouse_genomes_project 4 141839364 141855213 - MGP_C57BL6NJ_P0069002 Sepn1 protein_coding protein_coding MGP_C57BL6NJ_T0069003.1 MGP_C57BL6NJ_G0029355.1 mouse_genomes_project 4 141841051 141842496 - Sepn1 protein_coding processed_transcript MGP_C57BL6NJ_T0066371.1 MGP_C57BL6NJ_G0028764.1 mouse_genomes_project 4 62831503 62845252 - MGP_C57BL6NJ_P0066371 Mup5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067143.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617677 111628937 + Cyb5rl protein_coding retained_intron MGP_C57BL6NJ_T0067144.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617677 111636478 + MGP_C57BL6NJ_P0067144 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067145.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617685 111638213 + MGP_C57BL6NJ_P0067145 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067146.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617685 111621605 + MGP_C57BL6NJ_P0067146 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067147.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617708 111638920 + MGP_C57BL6NJ_P0067147 Cyb5rl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067148.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111617713 111621621 + MGP_C57BL6NJ_P0067148 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067149.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111619294 111636478 + MGP_C57BL6NJ_P0067149 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067150.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111619332 111638643 + MGP_C57BL6NJ_P0067150 Cyb5rl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067151.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111620857 111635456 + MGP_C57BL6NJ_P0067151 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067152.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111621559 111634991 + MGP_C57BL6NJ_P0067152 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0067153.1 MGP_C57BL6NJ_G0028952.1 mouse_genomes_project 4 111631682 111638429 + MGP_C57BL6NJ_P0067153 Cyb5rl protein_coding protein_coding MGP_C57BL6NJ_T0011842.1 MGP_C57BL6NJ_G0009927.1 mouse_genomes_project 4 122193611 122193702 + Gm27688 misc_RNA misc_RNA MGP_C57BL6NJ_T0067022.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107341360 107390807 - Wdr78 protein_coding retained_intron MGP_C57BL6NJ_T0067023.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107341360 107436229 - MGP_C57BL6NJ_P0067023 Wdr78 protein_coding protein_coding MGP_C57BL6NJ_T0067024.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107341364 107436485 - MGP_C57BL6NJ_P0067024 Wdr78 protein_coding protein_coding MGP_C57BL6NJ_T0067025.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107341364 107436154 - MGP_C57BL6NJ_P0067025 Wdr78 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067026.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107341396 107393424 - Wdr78 protein_coding retained_intron MGP_C57BL6NJ_T0067027.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107342567 107344913 - Wdr78 protein_coding processed_transcript MGP_C57BL6NJ_T0067028.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107342586 107390628 - MGP_C57BL6NJ_P0067028 Wdr78 protein_coding protein_coding MGP_C57BL6NJ_T0067029.1 MGP_C57BL6NJ_G0028926.1 mouse_genomes_project 4 107400182 107405602 - MGP_C57BL6NJ_P0067029 Wdr78 protein_coding protein_coding MGP_C57BL6NJ_T0011816.1 MGP_C57BL6NJ_G0009901.1 mouse_genomes_project 4 9029073 9029389 + Gm22477 misc_RNA misc_RNA MGP_C57BL6NJ_T0101649.1 MGP_C57BL6NJ_G0039695.1 mouse_genomes_project 4 38530047 38530173 + Gm23607 snoRNA snoRNA MGP_C57BL6NJ_T0103176.1 MGP_C57BL6NJ_G0040970.1 mouse_genomes_project 4 152176245 152178799 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0068856.1 MGP_C57BL6NJ_G0029326.1 mouse_genomes_project 4 140751615 140798357 - MGP_C57BL6NJ_P0068856 Zdhhc18 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0068857.1 MGP_C57BL6NJ_G0029326.1 mouse_genomes_project 4 140754980 140761879 - Zdhhc18 protein_coding retained_intron MGP_C57BL6NJ_T0068858.1 MGP_C57BL6NJ_G0029326.1 mouse_genomes_project 4 140755050 140759346 - Zdhhc18 protein_coding processed_transcript MGP_C57BL6NJ_T0068859.1 MGP_C57BL6NJ_G0029326.1 mouse_genomes_project 4 140759627 140761654 - Zdhhc18 protein_coding retained_intron MGP_C57BL6NJ_T0015161.1 MGP_C57BL6NJ_G0013206.1 mouse_genomes_project 4 142773135 142773603 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070413.1 MGP_C57BL6NJ_G0029680.1 mouse_genomes_project 4 166291505 166296945 + MGP_C57BL6NJ_P0070413 Perm1 protein_coding protein_coding MGP_C57BL6NJ_T0069417.1 MGP_C57BL6NJ_G0029456.1 mouse_genomes_project 4 148947424 148994868 + MGP_C57BL6NJ_P0069417 Padi2 protein_coding protein_coding MGP_C57BL6NJ_T0069418.1 MGP_C57BL6NJ_G0029456.1 mouse_genomes_project 4 148947538 148994858 + MGP_C57BL6NJ_P0069418 Padi2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069419.1 MGP_C57BL6NJ_G0029456.1 mouse_genomes_project 4 148964838 148974778 + Padi2 protein_coding processed_transcript MGP_C57BL6NJ_T0069420.1 MGP_C57BL6NJ_G0029456.1 mouse_genomes_project 4 148988786 148992017 + Padi2 protein_coding processed_transcript MGP_C57BL6NJ_T0068092.1 MGP_C57BL6NJ_G0029159.1 mouse_genomes_project 4 129424960 129436421 + MGP_C57BL6NJ_P0068092 Hpcal4 protein_coding protein_coding MGP_C57BL6NJ_T0068093.1 MGP_C57BL6NJ_G0029159.1 mouse_genomes_project 4 129424972 129433233 + MGP_C57BL6NJ_P0068093 Hpcal4 protein_coding protein_coding MGP_C57BL6NJ_T0068094.1 MGP_C57BL6NJ_G0029159.1 mouse_genomes_project 4 129425232 129430518 + MGP_C57BL6NJ_P0068094 Hpcal4 protein_coding protein_coding MGP_C57BL6NJ_T0068095.1 MGP_C57BL6NJ_G0029159.1 mouse_genomes_project 4 129425249 129425885 + Hpcal4 protein_coding processed_transcript MGP_C57BL6NJ_T0068096.1 MGP_C57BL6NJ_G0029159.1 mouse_genomes_project 4 129425462 129432464 + MGP_C57BL6NJ_P0068096 Hpcal4 protein_coding protein_coding MGP_C57BL6NJ_T0067682.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122280411 122293144 + MGP_C57BL6NJ_P0067682 Mutyh protein_coding protein_coding MGP_C57BL6NJ_T0067683.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122280413 122289369 + MGP_C57BL6NJ_P0067683 Mutyh protein_coding protein_coding MGP_C57BL6NJ_T0067684.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122280426 122293151 + Mutyh protein_coding retained_intron MGP_C57BL6NJ_T0067685.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122280436 122292485 + Mutyh protein_coding retained_intron MGP_C57BL6NJ_T0067686.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122288031 122293096 + MGP_C57BL6NJ_P0067686 Mutyh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067687.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122288089 122290752 + Mutyh protein_coding retained_intron MGP_C57BL6NJ_T0067688.1 MGP_C57BL6NJ_G0029059.1 mouse_genomes_project 4 122291410 122293153 + Mutyh protein_coding retained_intron MGP_C57BL6NJ_T0101645.1 MGP_C57BL6NJ_G0039691.1 mouse_genomes_project 4 26715837 26715966 + Gm25378 snoRNA snoRNA MGP_C57BL6NJ_T0068283.1 MGP_C57BL6NJ_G0029205.1 mouse_genomes_project 4 133004939 133038674 - MGP_C57BL6NJ_P0068283 Ago1 protein_coding protein_coding MGP_C57BL6NJ_T0068284.1 MGP_C57BL6NJ_G0029205.1 mouse_genomes_project 4 133008248 133031618 - MGP_C57BL6NJ_P0068284 Ago1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068285.1 MGP_C57BL6NJ_G0029205.1 mouse_genomes_project 4 133009430 133029043 - MGP_C57BL6NJ_P0068285 Ago1 protein_coding protein_coding MGP_C57BL6NJ_T0068286.1 MGP_C57BL6NJ_G0029205.1 mouse_genomes_project 4 133012527 133013289 - Ago1 protein_coding retained_intron MGP_C57BL6NJ_T0068287.1 MGP_C57BL6NJ_G0029205.1 mouse_genomes_project 4 133029150 133029961 - Ago1 protein_coding retained_intron MGP_C57BL6NJ_T0066528.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76303889 76492995 + MGP_C57BL6NJ_P0066528 Kdm4c protein_coding protein_coding MGP_C57BL6NJ_T0066529.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76319068 76492995 + MGP_C57BL6NJ_P0066529 Kdm4c protein_coding protein_coding MGP_C57BL6NJ_T0066530.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76331719 76407063 + Kdm4c protein_coding processed_transcript MGP_C57BL6NJ_T0066531.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76331719 76409957 + MGP_C57BL6NJ_P0066531 Kdm4c protein_coding protein_coding MGP_C57BL6NJ_T0066532.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76331720 76342563 + Kdm4c protein_coding processed_transcript MGP_C57BL6NJ_T0066533.1 MGP_C57BL6NJ_G0028810.1 mouse_genomes_project 4 76331720 76338582 + Kdm4c protein_coding processed_transcript MGP_C57BL6NJ_T0065031.1 MGP_C57BL6NJ_G0028441.1 mouse_genomes_project 4 669285 698455 - MGP_C57BL6NJ_P0065031 Sdr16c5 protein_coding protein_coding MGP_C57BL6NJ_T0065032.1 MGP_C57BL6NJ_G0028441.1 mouse_genomes_project 4 691132 695413 - Sdr16c5 protein_coding processed_transcript MGP_C57BL6NJ_T0008057.1 MGP_C57BL6NJ_G0006587.1 mouse_genomes_project 4 86950308 86953149 - 6030471H07Rik lincRNA lincRNA MGP_C57BL6NJ_T0067690.1 MGP_C57BL6NJ_G0029061.1 mouse_genomes_project 4 122361221 122481669 + MGP_C57BL6NJ_P0067690 Zswim5 protein_coding protein_coding MGP_C57BL6NJ_T0015140.1 MGP_C57BL6NJ_G0013185.1 mouse_genomes_project 4 133662212 133662432 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069082.1 MGP_C57BL6NJ_G0029374.1 mouse_genomes_project 4 143250535 143263874 + MGP_C57BL6NJ_P0069082 Srsf10 protein_coding protein_coding MGP_C57BL6NJ_T0069083.1 MGP_C57BL6NJ_G0029374.1 mouse_genomes_project 4 143250900 143253588 + Srsf10 protein_coding processed_transcript MGP_C57BL6NJ_T0069084.1 MGP_C57BL6NJ_G0029374.1 mouse_genomes_project 4 143250920 143254018 + Srsf10 protein_coding processed_transcript MGP_C57BL6NJ_T0069085.1 MGP_C57BL6NJ_G0029374.1 mouse_genomes_project 4 143256574 143258936 + Srsf10 protein_coding processed_transcript MGP_C57BL6NJ_T0069086.1 MGP_C57BL6NJ_G0029374.1 mouse_genomes_project 4 143256606 143259099 + Srsf10 protein_coding processed_transcript MGP_C57BL6NJ_T0014775.1 MGP_C57BL6NJ_G0012820.1 mouse_genomes_project 4 13385077 13385434 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068303.1 MGP_C57BL6NJ_G0029211.1 mouse_genomes_project 4 133342706 133352445 - MGP_C57BL6NJ_P0068303 Ncdn protein_coding protein_coding MGP_C57BL6NJ_T0068304.1 MGP_C57BL6NJ_G0029211.1 mouse_genomes_project 4 133343687 133352474 - Ncdn protein_coding processed_transcript MGP_C57BL6NJ_T0068305.1 MGP_C57BL6NJ_G0029211.1 mouse_genomes_project 4 133343687 133352463 - MGP_C57BL6NJ_P0068305 Ncdn protein_coding protein_coding MGP_C57BL6NJ_T0101684.1 MGP_C57BL6NJ_G0039730.1 mouse_genomes_project 4 94453078 94453210 - Gm25244 snoRNA snoRNA MGP_C57BL6NJ_T0101643.1 MGP_C57BL6NJ_G0039689.1 mouse_genomes_project 4 20222824 20222957 + Gm24607 snoRNA snoRNA MGP_C57BL6NJ_T0004683.1 MGP_C57BL6NJ_G0004064.1 mouse_genomes_project 4 125006696 125011150 - Gm12927 antisense antisense MGP_C57BL6NJ_T0015183.1 MGP_C57BL6NJ_G0013228.1 mouse_genomes_project 4 151999595 151999851 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014996.1 MGP_C57BL6NJ_G0013041.1 mouse_genomes_project 4 88155636 88156039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014928.1 MGP_C57BL6NJ_G0012973.1 mouse_genomes_project 4 58214611 58215097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015070.1 MGP_C57BL6NJ_G0013115.1 mouse_genomes_project 4 114369920 114371064 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067080.1 MGP_C57BL6NJ_G0028939.1 mouse_genomes_project 4 110808091 110935663 + MGP_C57BL6NJ_P0067080 Usp24 protein_coding protein_coding MGP_C57BL6NJ_T0067081.1 MGP_C57BL6NJ_G0028939.1 mouse_genomes_project 4 110808098 110857227 + Usp24 protein_coding retained_intron MGP_C57BL6NJ_T0067082.1 MGP_C57BL6NJ_G0028939.1 mouse_genomes_project 4 110808112 110935668 + MGP_C57BL6NJ_P0067082 Usp24 protein_coding protein_coding MGP_C57BL6NJ_T0067083.1 MGP_C57BL6NJ_G0028939.1 mouse_genomes_project 4 110922838 110925198 + Usp24 protein_coding processed_transcript MGP_C57BL6NJ_T0014965.1 MGP_C57BL6NJ_G0013010.1 mouse_genomes_project 4 76829167 76830385 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068344.1 MGP_C57BL6NJ_G0029217.1 mouse_genomes_project 4 133764939 133770893 + MGP_C57BL6NJ_P0068344 Tmem35b protein_coding protein_coding MGP_C57BL6NJ_T0068345.1 MGP_C57BL6NJ_G0029217.1 mouse_genomes_project 4 133767294 133770893 + MGP_C57BL6NJ_P0068345 Tmem35b protein_coding protein_coding MGP_C57BL6NJ_T0065216.1 MGP_C57BL6NJ_G0028482.1 mouse_genomes_project 4 12303190 12520912 - MGP_C57BL6NJ_P0065216 Necab1 protein_coding protein_coding MGP_C57BL6NJ_T0065217.1 MGP_C57BL6NJ_G0028482.1 mouse_genomes_project 4 12305874 12521575 - MGP_C57BL6NJ_P0065217 Necab1 protein_coding protein_coding MGP_C57BL6NJ_T0065218.1 MGP_C57BL6NJ_G0028482.1 mouse_genomes_project 4 12480897 12520742 - Necab1 protein_coding processed_transcript MGP_C57BL6NJ_T0068227.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132636180 132675910 + MGP_C57BL6NJ_P0068227 Stk40 protein_coding protein_coding MGP_C57BL6NJ_T0068228.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132636195 132675911 + MGP_C57BL6NJ_P0068228 Stk40 protein_coding protein_coding MGP_C57BL6NJ_T0068229.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132636224 132659993 + MGP_C57BL6NJ_P0068229 Stk40 protein_coding protein_coding MGP_C57BL6NJ_T0068230.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132636258 132649922 + Stk40 protein_coding processed_transcript MGP_C57BL6NJ_T0068231.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132650495 132663850 + MGP_C57BL6NJ_P0068231 Stk40 protein_coding protein_coding MGP_C57BL6NJ_T0068232.1 MGP_C57BL6NJ_G0029195.1 mouse_genomes_project 4 132663700 132667680 + Stk40 protein_coding processed_transcript MGP_C57BL6NJ_T0068671.1 MGP_C57BL6NJ_G0029283.1 mouse_genomes_project 4 138802120 138831482 + MGP_C57BL6NJ_P0068671 Srsf4 protein_coding protein_coding MGP_C57BL6NJ_T0068672.1 MGP_C57BL6NJ_G0029283.1 mouse_genomes_project 4 138802319 138820648 + MGP_C57BL6NJ_P0068672 Srsf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068673.1 MGP_C57BL6NJ_G0029283.1 mouse_genomes_project 4 138812798 138827610 + MGP_C57BL6NJ_P0068673 Srsf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068674.1 MGP_C57BL6NJ_G0029283.1 mouse_genomes_project 4 138813711 138831482 + Srsf4 protein_coding retained_intron MGP_C57BL6NJ_T0068675.1 MGP_C57BL6NJ_G0029283.1 mouse_genomes_project 4 138813929 138831483 + MGP_C57BL6NJ_P0068675 Srsf4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065130.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8252807 8255418 + Ccne2 protein_coding processed_transcript MGP_C57BL6NJ_T0065131.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8252810 8266123 + MGP_C57BL6NJ_P0065131 Ccne2 protein_coding protein_coding MGP_C57BL6NJ_T0065132.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8253165 8256614 + Ccne2 protein_coding processed_transcript MGP_C57BL6NJ_T0065133.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8253182 8266227 + MGP_C57BL6NJ_P0065133 Ccne2 protein_coding protein_coding MGP_C57BL6NJ_T0065134.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8253186 8266130 + MGP_C57BL6NJ_P0065134 Ccne2 protein_coding protein_coding MGP_C57BL6NJ_T0065135.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8253192 8256496 + Ccne2 protein_coding processed_transcript MGP_C57BL6NJ_T0065136.1 MGP_C57BL6NJ_G0028461.1 mouse_genomes_project 4 8254053 8254692 + Ccne2 protein_coding processed_transcript MGP_C57BL6NJ_T0014963.1 MGP_C57BL6NJ_G0013008.1 mouse_genomes_project 4 76284020 76285576 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068911.1 MGP_C57BL6NJ_G0029335.1 mouse_genomes_project 4 141321005 141333567 - Cd52 protein_coding processed_transcript MGP_C57BL6NJ_T0068914.1 MGP_C57BL6NJ_G0029335.1 mouse_genomes_project 4 141332061 141333608 - MGP_C57BL6NJ_P0068914 Cd52 protein_coding protein_coding MGP_C57BL6NJ_T0068915.1 MGP_C57BL6NJ_G0029335.1 mouse_genomes_project 4 141332601 141333564 - Cd52 protein_coding processed_transcript MGP_C57BL6NJ_T0103151.1 MGP_C57BL6NJ_G0040945.1 mouse_genomes_project 4 100116811 100151477 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008011.1 MGP_C57BL6NJ_G0006550.1 mouse_genomes_project 4 45573705 45619732 + Gm829 lincRNA lincRNA MGP_C57BL6NJ_T0008012.1 MGP_C57BL6NJ_G0006550.1 mouse_genomes_project 4 45573705 45585955 + Gm829 lincRNA lincRNA MGP_C57BL6NJ_T0068177.1 MGP_C57BL6NJ_G0029180.1 mouse_genomes_project 4 131273069 131277676 + MGP_C57BL6NJ_P0068177 Yrdc protein_coding protein_coding MGP_C57BL6NJ_T0068178.1 MGP_C57BL6NJ_G0029180.1 mouse_genomes_project 4 131273784 131276912 + MGP_C57BL6NJ_P0068178 Yrdc protein_coding protein_coding MGP_C57BL6NJ_T0068179.1 MGP_C57BL6NJ_G0029180.1 mouse_genomes_project 4 131274328 131277152 + Yrdc protein_coding retained_intron MGP_C57BL6NJ_T0067560.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121339268 121392418 - Faah protein_coding retained_intron MGP_C57BL6NJ_T0067561.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121370127 121392459 - Faah protein_coding retained_intron MGP_C57BL6NJ_T0067562.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121370127 121392669 - MGP_C57BL6NJ_P0067562 Faah protein_coding protein_coding MGP_C57BL6NJ_T0067563.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121371651 121392470 - Faah protein_coding retained_intron MGP_C57BL6NJ_T0067564.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121371764 121373527 - Faah protein_coding retained_intron MGP_C57BL6NJ_T0067565.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121372172 121373396 - Faah protein_coding retained_intron MGP_C57BL6NJ_T0067566.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121375169 121392418 - Faah protein_coding processed_transcript MGP_C57BL6NJ_T0067567.1 MGP_C57BL6NJ_G0029037.1 mouse_genomes_project 4 121379174 121392440 - Faah protein_coding processed_transcript MGP_C57BL6NJ_T0069674.1 MGP_C57BL6NJ_G0029544.1 mouse_genomes_project 4 157221337 157256366 - MGP_C57BL6NJ_P0069674 Clcn6 protein_coding protein_coding MGP_C57BL6NJ_T0069675.1 MGP_C57BL6NJ_G0029544.1 mouse_genomes_project 4 157223212 157256358 - MGP_C57BL6NJ_P0069675 Clcn6 protein_coding protein_coding MGP_C57BL6NJ_T0069676.1 MGP_C57BL6NJ_G0029544.1 mouse_genomes_project 4 157223667 157256315 - MGP_C57BL6NJ_P0069676 Clcn6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069677.1 MGP_C57BL6NJ_G0029544.1 mouse_genomes_project 4 157241513 157256308 - Clcn6 protein_coding processed_transcript MGP_C57BL6NJ_T0069678.1 MGP_C57BL6NJ_G0029544.1 mouse_genomes_project 4 157244170 157256107 - MGP_C57BL6NJ_P0069678 Clcn6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069689.1 MGP_C57BL6NJ_G0029547.1 mouse_genomes_project 4 157323236 157355448 - MGP_C57BL6NJ_P0069689 Draxin protein_coding protein_coding MGP_C57BL6NJ_T0066237.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57488186 57549185 - MGP_C57BL6NJ_P0066237 Ikbkap protein_coding protein_coding MGP_C57BL6NJ_T0066238.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57489518 57495847 - Ikbkap protein_coding retained_intron MGP_C57BL6NJ_T0066239.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57489521 57501892 - Ikbkap protein_coding retained_intron MGP_C57BL6NJ_T0066240.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57493429 57496953 - Ikbkap protein_coding retained_intron MGP_C57BL6NJ_T0066241.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57506418 57518180 - Ikbkap protein_coding retained_intron MGP_C57BL6NJ_T0066242.1 MGP_C57BL6NJ_G0028731.1 mouse_genomes_project 4 57522050 57525324 - Ikbkap protein_coding retained_intron MGP_C57BL6NJ_T0068788.1 MGP_C57BL6NJ_G0029308.1 mouse_genomes_project 4 140040016 140054302 + Fgr protein_coding processed_transcript MGP_C57BL6NJ_T0068789.1 MGP_C57BL6NJ_G0029308.1 mouse_genomes_project 4 140040023 140075466 + MGP_C57BL6NJ_P0068789 Fgr protein_coding protein_coding MGP_C57BL6NJ_T0068790.1 MGP_C57BL6NJ_G0029308.1 mouse_genomes_project 4 140043037 140074323 + Fgr protein_coding processed_transcript MGP_C57BL6NJ_T0066534.1 MGP_C57BL6NJ_G0028811.1 mouse_genomes_project 4 77501480 77502432 - MGP_C57BL6NJ_P0066534 Tmem261 protein_coding protein_coding MGP_C57BL6NJ_T0014758.1 MGP_C57BL6NJ_G0012803.1 mouse_genomes_project 4 8468995 8471003 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065363.1 MGP_C57BL6NJ_G0028521.1 mouse_genomes_project 4 31242896 31245013 - MGP_C57BL6NJ_P0065363 Gja10 protein_coding protein_coding MGP_C57BL6NJ_T0010842.1 MGP_C57BL6NJ_G0008927.1 mouse_genomes_project 4 90601214 90601279 + Gm23154 miRNA miRNA MGP_C57BL6NJ_T0068149.1 MGP_C57BL6NJ_G0029172.1 mouse_genomes_project 4 131015481 131016354 - MGP_C57BL6NJ_P0068149 3100002H09Rik protein_coding protein_coding MGP_C57BL6NJ_T0069613.1 MGP_C57BL6NJ_G0029518.1 mouse_genomes_project 4 152788509 152814920 - MGP_C57BL6NJ_P0069613 1700012P22Rik protein_coding protein_coding MGP_C57BL6NJ_T0067487.1 MGP_C57BL6NJ_G0029018.1 mouse_genomes_project 4 120197906 120226330 - MGP_C57BL6NJ_P0067487 Cmpk1 protein_coding protein_coding MGP_C57BL6NJ_T0067488.1 MGP_C57BL6NJ_G0029018.1 mouse_genomes_project 4 120202243 120226238 - MGP_C57BL6NJ_P0067488 Cmpk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067489.1 MGP_C57BL6NJ_G0029018.1 mouse_genomes_project 4 120208353 120226161 - MGP_C57BL6NJ_P0067489 Cmpk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067490.1 MGP_C57BL6NJ_G0029018.1 mouse_genomes_project 4 120223906 120226238 - Cmpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0010820.1 MGP_C57BL6NJ_G0008905.1 mouse_genomes_project 4 32169115 32169244 + Mir8118 miRNA miRNA MGP_C57BL6NJ_T0001548.1 MGP_C57BL6NJ_G0001448.1 mouse_genomes_project 4 47912087 48014385 - TEC TEC MGP_C57BL6NJ_T0015203.1 MGP_C57BL6NJ_G0013248.1 mouse_genomes_project 4 155789754 155790528 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103169.1 MGP_C57BL6NJ_G0040963.1 mouse_genomes_project 4 128910251 128914701 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0065526.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40314838 40375945 + MGP_C57BL6NJ_P0065526 Nfx1 protein_coding protein_coding MGP_C57BL6NJ_T0065527.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40314838 40362579 + MGP_C57BL6NJ_P0065527 Nfx1 protein_coding protein_coding MGP_C57BL6NJ_T0065528.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40314838 40363842 + MGP_C57BL6NJ_P0065528 Nfx1 protein_coding protein_coding MGP_C57BL6NJ_T0065529.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40349844 40362140 + Nfx1 protein_coding processed_transcript MGP_C57BL6NJ_T0065530.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40359177 40372293 + Nfx1 protein_coding processed_transcript MGP_C57BL6NJ_T0065531.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40371328 40375130 + Nfx1 protein_coding processed_transcript MGP_C57BL6NJ_T0065532.1 MGP_C57BL6NJ_G0028563.1 mouse_genomes_project 4 40373155 40374492 + Nfx1 protein_coding processed_transcript MGP_C57BL6NJ_T0067884.1 MGP_C57BL6NJ_G0029098.1 mouse_genomes_project 4 124302277 124303225 + MGP_C57BL6NJ_P0067884 Olfr62 protein_coding protein_coding MGP_C57BL6NJ_T0014766.1 MGP_C57BL6NJ_G0012811.1 mouse_genomes_project 4 10828799 10829535 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067467.1 MGP_C57BL6NJ_G0029009.1 mouse_genomes_project 4 117536861 117637826 + MGP_C57BL6NJ_P0067467 Skint2 protein_coding protein_coding MGP_C57BL6NJ_T0067468.1 MGP_C57BL6NJ_G0029009.1 mouse_genomes_project 4 117599974 117616691 + MGP_C57BL6NJ_P0067468 Skint2 protein_coding protein_coding MGP_C57BL6NJ_T0067469.1 MGP_C57BL6NJ_G0029009.1 mouse_genomes_project 4 117600117 117642234 + MGP_C57BL6NJ_P0067469 Skint2 protein_coding protein_coding MGP_C57BL6NJ_T0067470.1 MGP_C57BL6NJ_G0029009.1 mouse_genomes_project 4 117600128 117637826 + Skint2 protein_coding processed_transcript MGP_C57BL6NJ_T0103157.1 MGP_C57BL6NJ_G0040951.1 mouse_genomes_project 4 120432597 120433643 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008043.1 MGP_C57BL6NJ_G0006575.1 mouse_genomes_project 4 65253797 65263867 + Gm11216 lincRNA lincRNA MGP_C57BL6NJ_T0015131.1 MGP_C57BL6NJ_G0013176.1 mouse_genomes_project 4 130224016 130224560 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068522.1 MGP_C57BL6NJ_G0029257.1 mouse_genomes_project 4 136495707 136501751 - MGP_C57BL6NJ_P0068522 Iqcc protein_coding protein_coding MGP_C57BL6NJ_T0068523.1 MGP_C57BL6NJ_G0029257.1 mouse_genomes_project 4 136498410 136499685 - Iqcc protein_coding processed_transcript MGP_C57BL6NJ_T0068524.1 MGP_C57BL6NJ_G0029257.1 mouse_genomes_project 4 136499993 136501728 - Iqcc protein_coding retained_intron MGP_C57BL6NJ_T0068525.1 MGP_C57BL6NJ_G0029257.1 mouse_genomes_project 4 136500750 136501748 - MGP_C57BL6NJ_P0068525 Iqcc protein_coding protein_coding MGP_C57BL6NJ_T0068526.1 MGP_C57BL6NJ_G0029257.1 mouse_genomes_project 4 136500894 136501732 - Iqcc protein_coding processed_transcript MGP_C57BL6NJ_T0004746.1 MGP_C57BL6NJ_G0004113.1 mouse_genomes_project 4 157290320 157291945 - antisense antisense MGP_C57BL6NJ_T0004747.1 MGP_C57BL6NJ_G0004113.1 mouse_genomes_project 4 157290535 157299842 - antisense antisense MGP_C57BL6NJ_T0065569.1 MGP_C57BL6NJ_G0028573.1 mouse_genomes_project 4 40904244 40911717 - MGP_C57BL6NJ_P0065569 AI464131 protein_coding protein_coding MGP_C57BL6NJ_T0065570.1 MGP_C57BL6NJ_G0028573.1 mouse_genomes_project 4 40908134 40911309 - MGP_C57BL6NJ_P0065570 AI464131 protein_coding protein_coding MGP_C57BL6NJ_T0068034.1 MGP_C57BL6NJ_G0029139.1 mouse_genomes_project 4 126745806 126776503 + Rims3 protein_coding processed_transcript MGP_C57BL6NJ_T0068035.1 MGP_C57BL6NJ_G0029139.1 mouse_genomes_project 4 126745809 126790185 + MGP_C57BL6NJ_P0068035 Rims3 protein_coding protein_coding MGP_C57BL6NJ_T0068036.1 MGP_C57BL6NJ_G0029139.1 mouse_genomes_project 4 126754111 126790185 + MGP_C57BL6NJ_P0068036 Rims3 protein_coding protein_coding MGP_C57BL6NJ_T0068037.1 MGP_C57BL6NJ_G0029139.1 mouse_genomes_project 4 126769927 126785166 + MGP_C57BL6NJ_P0068037 Rims3 protein_coding protein_coding MGP_C57BL6NJ_T0015075.1 MGP_C57BL6NJ_G0013120.1 mouse_genomes_project 4 116216633 116217681 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099224.1 MGP_C57BL6NJ_G0037288.1 mouse_genomes_project 4 19092317 19092673 + Gm22817 ribozyme ribozyme MGP_C57BL6NJ_T0066037.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46040390 46066794 - MGP_C57BL6NJ_P0066037 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0066038.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46043126 46066757 - MGP_C57BL6NJ_P0066038 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0066039.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46050799 46066732 - Tstd2 protein_coding retained_intron MGP_C57BL6NJ_T0066040.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46056083 46060232 - Tstd2 protein_coding retained_intron MGP_C57BL6NJ_T0066041.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46060242 46067013 - MGP_C57BL6NJ_P0066041 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0066042.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46060305 46066728 - MGP_C57BL6NJ_P0066042 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0066043.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46060454 46064097 - MGP_C57BL6NJ_P0066043 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0066044.1 MGP_C57BL6NJ_G0028672.1 mouse_genomes_project 4 46063820 46066774 - MGP_C57BL6NJ_P0066044 Tstd2 protein_coding protein_coding MGP_C57BL6NJ_T0070301.1 MGP_C57BL6NJ_G0029656.1 mouse_genomes_project 4 165807944 165814494 - MGP_C57BL6NJ_P0070301 Vwa1 protein_coding protein_coding MGP_C57BL6NJ_T0065520.1 MGP_C57BL6NJ_G0028560.1 mouse_genomes_project 4 40263598 40275388 + MGP_C57BL6NJ_P0065520 Spink4 protein_coding protein_coding MGP_C57BL6NJ_T0065521.1 MGP_C57BL6NJ_G0028560.1 mouse_genomes_project 4 40263600 40268591 + Spink4 protein_coding processed_transcript MGP_C57BL6NJ_T0065258.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19455932 19464417 - Prdm13 protein_coding processed_transcript MGP_C57BL6NJ_T0065259.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19455933 19464417 - MGP_C57BL6NJ_P0065259 Prdm13 protein_coding protein_coding MGP_C57BL6NJ_T0065260.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19455933 19464237 - MGP_C57BL6NJ_P0065260 Prdm13 protein_coding protein_coding MGP_C57BL6NJ_T0065261.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19458117 19464237 - Prdm13 protein_coding processed_transcript MGP_C57BL6NJ_T0065262.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19458199 19464235 - Prdm13 protein_coding processed_transcript MGP_C57BL6NJ_T0065263.1 MGP_C57BL6NJ_G0028501.1 mouse_genomes_project 4 19460765 19464299 - Prdm13 protein_coding retained_intron MGP_C57BL6NJ_T0103162.1 MGP_C57BL6NJ_G0040956.1 mouse_genomes_project 4 124547859 124548813 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008015.1 MGP_C57BL6NJ_G0006553.1 mouse_genomes_project 4 48087231 48089037 + Gm12434 lincRNA lincRNA MGP_C57BL6NJ_T0014866.1 MGP_C57BL6NJ_G0012911.1 mouse_genomes_project 4 39119305 39119993 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069446.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149120297 149134942 - Necap2 protein_coding processed_transcript MGP_C57BL6NJ_T0069447.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149120297 149134957 - MGP_C57BL6NJ_P0069447 Necap2 protein_coding protein_coding MGP_C57BL6NJ_T0069448.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149121132 149131657 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0069449.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149121180 149122624 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0069450.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149121301 149125625 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0069451.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149121348 149127491 - MGP_C57BL6NJ_P0069451 Necap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069452.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149121994 149134957 - Necap2 protein_coding processed_transcript MGP_C57BL6NJ_T0069453.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149123867 149134957 - Necap2 protein_coding processed_transcript MGP_C57BL6NJ_T0069454.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149123937 149125559 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0069455.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149123965 149134894 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0069456.1 MGP_C57BL6NJ_G0029461.1 mouse_genomes_project 4 149126114 149134957 - Necap2 protein_coding retained_intron MGP_C57BL6NJ_T0068593.1 MGP_C57BL6NJ_G0029267.1 mouse_genomes_project 4 137041937 137069066 + MGP_C57BL6NJ_P0068593 Pef1 protein_coding protein_coding MGP_C57BL6NJ_T0068594.1 MGP_C57BL6NJ_G0029267.1 mouse_genomes_project 4 137046952 137069065 + MGP_C57BL6NJ_P0068594 Pef1 protein_coding protein_coding MGP_C57BL6NJ_T0064994.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 90620 120532 - MGP_C57BL6NJ_P0064994 Tmem68 protein_coding protein_coding MGP_C57BL6NJ_T0064995.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 90620 120488 - MGP_C57BL6NJ_P0064995 Tmem68 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0064996.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 91907 94948 - Tmem68 protein_coding retained_intron MGP_C57BL6NJ_T0064997.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 115021 120483 - Tmem68 protein_coding retained_intron MGP_C57BL6NJ_T0064998.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 115040 120483 - Tmem68 protein_coding processed_transcript MGP_C57BL6NJ_T0064999.1 MGP_C57BL6NJ_G0028434.1 mouse_genomes_project 4 115215 120206 - MGP_C57BL6NJ_P0064999 Tmem68 protein_coding protein_coding MGP_C57BL6NJ_T0069715.1 MGP_C57BL6NJ_G0029552.1 mouse_genomes_project 4 157475942 157525616 - MGP_C57BL6NJ_P0069715 Ptchd2 protein_coding protein_coding MGP_C57BL6NJ_T0069716.1 MGP_C57BL6NJ_G0029552.1 mouse_genomes_project 4 157495934 157498470 - Ptchd2 protein_coding retained_intron MGP_C57BL6NJ_T0069717.1 MGP_C57BL6NJ_G0029552.1 mouse_genomes_project 4 157497597 157498950 - Ptchd2 protein_coding processed_transcript MGP_C57BL6NJ_T0008005.1 MGP_C57BL6NJ_G0006544.1 mouse_genomes_project 4 40043940 40046185 - Gm6297 lincRNA lincRNA MGP_C57BL6NJ_T0010839.1 MGP_C57BL6NJ_G0008924.1 mouse_genomes_project 4 79311505 79311582 - Gm23159 miRNA miRNA MGP_C57BL6NJ_T0068451.1 MGP_C57BL6NJ_G0029243.1 mouse_genomes_project 4 136153901 136184475 - MGP_C57BL6NJ_P0068451 Rbbp4 protein_coding protein_coding MGP_C57BL6NJ_T0068452.1 MGP_C57BL6NJ_G0029243.1 mouse_genomes_project 4 136156310 136183749 - Rbbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0068453.1 MGP_C57BL6NJ_G0029243.1 mouse_genomes_project 4 136173928 136184354 - Rbbp4 protein_coding retained_intron MGP_C57BL6NJ_T0068454.1 MGP_C57BL6NJ_G0029243.1 mouse_genomes_project 4 136177753 136184188 - MGP_C57BL6NJ_P0068454 Rbbp4 protein_coding protein_coding MGP_C57BL6NJ_T0068038.1 MGP_C57BL6NJ_G0029140.1 mouse_genomes_project 4 126827482 126828311 - MGP_C57BL6NJ_P0068038 Exo5 protein_coding protein_coding MGP_C57BL6NJ_T0068039.1 MGP_C57BL6NJ_G0029140.1 mouse_genomes_project 4 126827482 126832512 - MGP_C57BL6NJ_P0068039 Exo5 protein_coding protein_coding MGP_C57BL6NJ_T0068040.1 MGP_C57BL6NJ_G0029140.1 mouse_genomes_project 4 126827488 126832512 - MGP_C57BL6NJ_P0068040 Exo5 protein_coding protein_coding MGP_C57BL6NJ_T0068041.1 MGP_C57BL6NJ_G0029140.1 mouse_genomes_project 4 126828555 126832524 - MGP_C57BL6NJ_P0068041 Exo5 protein_coding protein_coding MGP_C57BL6NJ_T0065228.1 MGP_C57BL6NJ_G0028487.1 mouse_genomes_project 4 13415245 13431969 - MGP_C57BL6NJ_P0065228 Osgin2 protein_coding protein_coding MGP_C57BL6NJ_T0065229.1 MGP_C57BL6NJ_G0028487.1 mouse_genomes_project 4 13415351 13420202 - Osgin2 protein_coding processed_transcript MGP_C57BL6NJ_T0065230.1 MGP_C57BL6NJ_G0028487.1 mouse_genomes_project 4 13420044 13431877 - MGP_C57BL6NJ_P0065230 Osgin2 protein_coding protein_coding MGP_C57BL6NJ_T0065231.1 MGP_C57BL6NJ_G0028487.1 mouse_genomes_project 4 13420624 13431902 - Osgin2 protein_coding processed_transcript MGP_C57BL6NJ_T0065232.1 MGP_C57BL6NJ_G0028487.1 mouse_genomes_project 4 13422971 13424486 - Osgin2 protein_coding processed_transcript MGP_C57BL6NJ_T0015123.1 MGP_C57BL6NJ_G0013168.1 mouse_genomes_project 4 128136558 128136784 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014892.1 MGP_C57BL6NJ_G0012937.1 mouse_genomes_project 4 49129748 49130086 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101705.1 MGP_C57BL6NJ_G0039751.1 mouse_genomes_project 4 137573649 137573722 + Snord85 snoRNA snoRNA MGP_C57BL6NJ_T0007971.1 MGP_C57BL6NJ_G0006515.1 mouse_genomes_project 4 7491919 7778070 - lincRNA lincRNA MGP_C57BL6NJ_T0007972.1 MGP_C57BL6NJ_G0006515.1 mouse_genomes_project 4 7513223 7837543 - lincRNA lincRNA MGP_C57BL6NJ_T0007973.1 MGP_C57BL6NJ_G0006515.1 mouse_genomes_project 4 7780879 7837527 - lincRNA lincRNA MGP_C57BL6NJ_T0007974.1 MGP_C57BL6NJ_G0006515.1 mouse_genomes_project 4 7781155 7837530 - lincRNA lincRNA MGP_C57BL6NJ_T0068211.1 MGP_C57BL6NJ_G0029190.1 mouse_genomes_project 4 131978707 132218524 + MGP_C57BL6NJ_P0068211 Grik3 protein_coding protein_coding MGP_C57BL6NJ_T0067176.1 MGP_C57BL6NJ_G0028958.1 mouse_genomes_project 4 111814086 111826298 + Hspb11 protein_coding processed_transcript MGP_C57BL6NJ_T0067177.1 MGP_C57BL6NJ_G0028958.1 mouse_genomes_project 4 111814091 111841436 + MGP_C57BL6NJ_P0067177 Hspb11 protein_coding protein_coding MGP_C57BL6NJ_T0067178.1 MGP_C57BL6NJ_G0028958.1 mouse_genomes_project 4 111814113 111841426 + MGP_C57BL6NJ_P0067178 Hspb11 protein_coding protein_coding MGP_C57BL6NJ_T0067179.1 MGP_C57BL6NJ_G0028958.1 mouse_genomes_project 4 111822503 111841430 + Hspb11 protein_coding processed_transcript MGP_C57BL6NJ_T0004653.1 MGP_C57BL6NJ_G0004041.1 mouse_genomes_project 4 111085474 111090415 - antisense antisense MGP_C57BL6NJ_T0069416.1 MGP_C57BL6NJ_G0029455.1 mouse_genomes_project 4 148840017 148874917 - MGP_C57BL6NJ_P0069416 Padi1 protein_coding protein_coding MGP_C57BL6NJ_T0068838.1 MGP_C57BL6NJ_G0029318.1 mouse_genomes_project 4 140613298 140621105 + MGP_C57BL6NJ_P0068838 Fam46b protein_coding protein_coding MGP_C57BL6NJ_T0065174.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9059513 9067782 - MGP_C57BL6NJ_P0065174 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065175.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9061136 9067311 - MGP_C57BL6NJ_P0065175 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065176.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9061136 9067151 - MGP_C57BL6NJ_P0065176 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065177.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9061136 9067257 - MGP_C57BL6NJ_P0065177 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065178.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9061136 9067757 - MGP_C57BL6NJ_P0065178 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065179.1 MGP_C57BL6NJ_G0028471.1 mouse_genomes_project 4 9061140 9067750 - MGP_C57BL6NJ_P0065179 Pdp1 protein_coding protein_coding MGP_C57BL6NJ_T0065166.1 MGP_C57BL6NJ_G0028467.1 mouse_genomes_project 4 8663019 8671031 + MGP_C57BL6NJ_P0065166 Fsbp protein_coding protein_coding MGP_C57BL6NJ_T0069361.1 MGP_C57BL6NJ_G0029441.1 mouse_genomes_project 4 147216182 147247005 + MGP_C57BL6NJ_P0069361 Emc1 protein_coding protein_coding MGP_C57BL6NJ_T0069362.1 MGP_C57BL6NJ_G0029441.1 mouse_genomes_project 4 147216188 147247005 + MGP_C57BL6NJ_P0069362 Emc1 protein_coding protein_coding MGP_C57BL6NJ_T0069363.1 MGP_C57BL6NJ_G0029441.1 mouse_genomes_project 4 147216188 147247005 + MGP_C57BL6NJ_P0069363 Emc1 protein_coding protein_coding MGP_C57BL6NJ_T0069364.1 MGP_C57BL6NJ_G0029441.1 mouse_genomes_project 4 147216204 147218060 + Emc1 protein_coding processed_transcript MGP_C57BL6NJ_T0069366.1 MGP_C57BL6NJ_G0029441.1 mouse_genomes_project 4 147226469 147242981 + Emc1 protein_coding processed_transcript MGP_C57BL6NJ_T0010858.1 MGP_C57BL6NJ_G0008943.1 mouse_genomes_project 4 126660302 126660394 - Mir30e miRNA miRNA MGP_C57BL6NJ_T0068066.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129041500 129079343 - MGP_C57BL6NJ_P0068066 Cap1 protein_coding protein_coding MGP_C57BL6NJ_T0068067.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129041500 129079476 - MGP_C57BL6NJ_P0068067 Cap1 protein_coding protein_coding MGP_C57BL6NJ_T0068068.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129041500 129079488 - MGP_C57BL6NJ_P0068068 Cap1 protein_coding protein_coding MGP_C57BL6NJ_T0068069.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129046096 129048313 - Cap1 protein_coding processed_transcript MGP_C57BL6NJ_T0068070.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129052294 129079397 - MGP_C57BL6NJ_P0068070 Cap1 protein_coding protein_coding MGP_C57BL6NJ_T0068071.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129057413 129079292 - Cap1 protein_coding processed_transcript MGP_C57BL6NJ_T0068072.1 MGP_C57BL6NJ_G0029152.1 mouse_genomes_project 4 129058504 129079296 - Cap1 protein_coding processed_transcript MGP_C57BL6NJ_T0067789.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123451911 123465810 - MGP_C57BL6NJ_P0067789 B4galt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067796.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123455669 123466131 - MGP_C57BL6NJ_P0067796 B4galt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067797.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123455779 123466142 - MGP_C57BL6NJ_P0067797 B4galt2 protein_coding protein_coding MGP_C57BL6NJ_T0067798.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123455950 123465767 - MGP_C57BL6NJ_P0067798 B4galt2 protein_coding protein_coding MGP_C57BL6NJ_T0067800.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123460228 123465810 - MGP_C57BL6NJ_P0067800 B4galt2 protein_coding protein_coding MGP_C57BL6NJ_T0067801.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123463673 123465874 - B4galt2 protein_coding processed_transcript MGP_C57BL6NJ_T0067802.1 MGP_C57BL6NJ_G0029080.1 mouse_genomes_project 4 123464047 123464946 - MGP_C57BL6NJ_P0067802 B4galt2 protein_coding protein_coding MGP_C57BL6NJ_T0015160.1 MGP_C57BL6NJ_G0013205.1 mouse_genomes_project 4 142745220 142745298 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066593.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85740501 85900463 - MGP_C57BL6NJ_P0066593 Frem1 protein_coding protein_coding MGP_C57BL6NJ_T0066594.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85740508 85865478 - MGP_C57BL6NJ_P0066594 Frem1 protein_coding protein_coding MGP_C57BL6NJ_T0066595.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85740508 85900635 - MGP_C57BL6NJ_P0066595 Frem1 protein_coding protein_coding MGP_C57BL6NJ_T0066596.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85743145 85757323 - Frem1 protein_coding processed_transcript MGP_C57BL6NJ_T0066597.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85758521 85767723 - Frem1 protein_coding retained_intron MGP_C57BL6NJ_T0066598.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85777967 85782739 - Frem1 protein_coding retained_intron MGP_C57BL6NJ_T0066599.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85780284 85812652 - MGP_C57BL6NJ_P0066599 Frem1 protein_coding protein_coding MGP_C57BL6NJ_T0066600.1 MGP_C57BL6NJ_G0028821.1 mouse_genomes_project 4 85834941 85900635 - Frem1 protein_coding processed_transcript MGP_C57BL6NJ_T0067328.1 MGP_C57BL6NJ_G0028986.1 mouse_genomes_project 4 113532946 113534575 + MGP_C57BL6NJ_P0067328 Kti12 protein_coding protein_coding MGP_C57BL6NJ_T0015017.1 MGP_C57BL6NJ_G0013062.1 mouse_genomes_project 4 96689820 96692747 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015145.1 MGP_C57BL6NJ_G0013190.1 mouse_genomes_project 4 136238065 136238401 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069825.1 MGP_C57BL6NJ_G0029571.1 mouse_genomes_project 4 158869469 158872359 + MGP_C57BL6NJ_P0069825 Lzic protein_coding protein_coding MGP_C57BL6NJ_T0069826.1 MGP_C57BL6NJ_G0029571.1 mouse_genomes_project 4 158869471 158872387 + MGP_C57BL6NJ_P0069826 Lzic protein_coding protein_coding MGP_C57BL6NJ_T0069827.1 MGP_C57BL6NJ_G0029571.1 mouse_genomes_project 4 158869480 158869982 + Lzic protein_coding processed_transcript MGP_C57BL6NJ_T0069828.1 MGP_C57BL6NJ_G0029571.1 mouse_genomes_project 4 158869534 158880914 + MGP_C57BL6NJ_P0069828 Lzic protein_coding protein_coding MGP_C57BL6NJ_T0069829.1 MGP_C57BL6NJ_G0029571.1 mouse_genomes_project 4 158869573 158870244 + Lzic protein_coding processed_transcript MGP_C57BL6NJ_T0065993.1 MGP_C57BL6NJ_G0028662.1 mouse_genomes_project 4 45186245 45190262 - MGP_C57BL6NJ_P0065993 Exosc3 protein_coding protein_coding MGP_C57BL6NJ_T0065994.1 MGP_C57BL6NJ_G0028662.1 mouse_genomes_project 4 45186426 45189969 - Exosc3 protein_coding processed_transcript MGP_C57BL6NJ_T0065995.1 MGP_C57BL6NJ_G0028662.1 mouse_genomes_project 4 45186586 45212363 - MGP_C57BL6NJ_P0065995 Exosc3 protein_coding protein_coding MGP_C57BL6NJ_T0065996.1 MGP_C57BL6NJ_G0028662.1 mouse_genomes_project 4 45187121 45190237 - Exosc3 protein_coding processed_transcript MGP_C57BL6NJ_T0010893.1 MGP_C57BL6NJ_G0008978.1 mouse_genomes_project 4 151370520 151370583 - Mir7021 miRNA miRNA MGP_C57BL6NJ_T0004612.1 MGP_C57BL6NJ_G0004011.1 mouse_genomes_project 4 45102039 45111307 - Frmpd1os antisense antisense MGP_C57BL6NJ_T0068373.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135422897 135537306 + MGP_C57BL6NJ_P0068373 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068374.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135422933 135495998 + MGP_C57BL6NJ_P0068374 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068375.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135458318 135489467 + Phc2 protein_coding retained_intron MGP_C57BL6NJ_T0068376.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135458375 135537306 + MGP_C57BL6NJ_P0068376 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068377.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135493967 135507911 + Phc2 protein_coding retained_intron MGP_C57BL6NJ_T0068378.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511073 135537306 + MGP_C57BL6NJ_P0068378 Phc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068379.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511077 135537306 + MGP_C57BL6NJ_P0068379 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068380.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511174 135532642 + MGP_C57BL6NJ_P0068380 Phc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068381.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511202 135529433 + MGP_C57BL6NJ_P0068381 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068382.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511425 135532499 + MGP_C57BL6NJ_P0068382 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068383.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511463 135527896 + MGP_C57BL6NJ_P0068383 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0068384.1 MGP_C57BL6NJ_G0029229.1 mouse_genomes_project 4 135511474 135531557 + MGP_C57BL6NJ_P0068384 Phc2 protein_coding protein_coding MGP_C57BL6NJ_T0004580.1 MGP_C57BL6NJ_G0003986.1 mouse_genomes_project 4 9134225 9149054 + Gm11842 antisense antisense MGP_C57BL6NJ_T0100417.1 MGP_C57BL6NJ_G0038463.1 mouse_genomes_project 4 166074273 166074374 - Gm25982 snRNA snRNA MGP_C57BL6NJ_T0004649.1 MGP_C57BL6NJ_G0004037.1 mouse_genomes_project 4 104617623 104622178 - Ube2uos antisense antisense MGP_C57BL6NJ_T0004743.1 MGP_C57BL6NJ_G0004110.1 mouse_genomes_project 4 152775190 152776624 + Pramef12os antisense antisense MGP_C57BL6NJ_T0015022.1 MGP_C57BL6NJ_G0013067.1 mouse_genomes_project 4 98158541 98159118 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008032.1 MGP_C57BL6NJ_G0006566.1 mouse_genomes_project 4 58083104 58090302 + Gm12536 lincRNA lincRNA MGP_C57BL6NJ_T0008106.1 MGP_C57BL6NJ_G0006625.1 mouse_genomes_project 4 121186561 121190360 + Gm12847 lincRNA lincRNA MGP_C57BL6NJ_T0065037.1 MGP_C57BL6NJ_G0028444.1 mouse_genomes_project 4 1428360 1458603 - MGP_C57BL6NJ_P0065037 Impad1 protein_coding protein_coding MGP_C57BL6NJ_T0004714.1 MGP_C57BL6NJ_G0004088.1 mouse_genomes_project 4 142669936 142672107 + Gm12984 antisense antisense MGP_C57BL6NJ_T0015115.1 MGP_C57BL6NJ_G0013160.1 mouse_genomes_project 4 127035604 127036027 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018567.1 MGP_C57BL6NJ_G0015971.1 mouse_genomes_project 4 139343462 139349111 - Snhg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0018568.1 MGP_C57BL6NJ_G0015971.1 mouse_genomes_project 4 139347381 139349134 - Snhg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0018569.1 MGP_C57BL6NJ_G0015971.1 mouse_genomes_project 4 139347382 139349081 - Snhg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0018570.1 MGP_C57BL6NJ_G0015971.1 mouse_genomes_project 4 139347382 139348381 - Snhg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0018571.1 MGP_C57BL6NJ_G0015971.1 mouse_genomes_project 4 139347452 139348784 - Snhg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0066157.1 MGP_C57BL6NJ_G0028705.1 mouse_genomes_project 4 49798321 49811696 - MGP_C57BL6NJ_P0066157 Tmem246 protein_coding protein_coding MGP_C57BL6NJ_T0066158.1 MGP_C57BL6NJ_G0028705.1 mouse_genomes_project 4 49800581 49811290 - MGP_C57BL6NJ_P0066158 Tmem246 protein_coding protein_coding MGP_C57BL6NJ_T0066159.1 MGP_C57BL6NJ_G0028705.1 mouse_genomes_project 4 49800867 49807706 - MGP_C57BL6NJ_P0066159 Tmem246 protein_coding protein_coding MGP_C57BL6NJ_T0065111.1 MGP_C57BL6NJ_G0028456.1 mouse_genomes_project 4 6811257 6829187 + MGP_C57BL6NJ_P0065111 Gdf6 protein_coding protein_coding MGP_C57BL6NJ_T0100369.1 MGP_C57BL6NJ_G0038415.1 mouse_genomes_project 4 103952121 103952203 + Gm26425 snRNA snRNA MGP_C57BL6NJ_T0010832.1 MGP_C57BL6NJ_G0008917.1 mouse_genomes_project 4 44697481 44698815 + miRNA miRNA MGP_C57BL6NJ_T0014874.1 MGP_C57BL6NJ_G0012919.1 mouse_genomes_project 4 40639926 40640154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101672.1 MGP_C57BL6NJ_G0039718.1 mouse_genomes_project 4 65649674 65649803 + Gm23950 snoRNA snoRNA MGP_C57BL6NJ_T0067205.1 MGP_C57BL6NJ_G0028962.1 mouse_genomes_project 4 112009228 112010674 + Glis1 protein_coding processed_transcript MGP_C57BL6NJ_T0067206.1 MGP_C57BL6NJ_G0028962.1 mouse_genomes_project 4 112009254 112144400 + MGP_C57BL6NJ_P0067206 Glis1 protein_coding protein_coding MGP_C57BL6NJ_T0067207.1 MGP_C57BL6NJ_G0028962.1 mouse_genomes_project 4 112009317 112216668 + MGP_C57BL6NJ_P0067207 Glis1 protein_coding protein_coding MGP_C57BL6NJ_T0067208.1 MGP_C57BL6NJ_G0028962.1 mouse_genomes_project 4 112161581 112209393 + Glis1 protein_coding processed_transcript MGP_C57BL6NJ_T0067209.1 MGP_C57BL6NJ_G0028962.1 mouse_genomes_project 4 112196921 112214315 + Glis1 protein_coding processed_transcript MGP_C57BL6NJ_T0066398.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63543786 63567848 - MGP_C57BL6NJ_P0066398 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0066399.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63544788 63567848 - MGP_C57BL6NJ_P0066399 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0066400.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63544788 63556027 - MGP_C57BL6NJ_P0066400 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0066401.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63544788 63567848 - MGP_C57BL6NJ_P0066401 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0066402.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63551640 63553373 - Wdr31 protein_coding retained_intron MGP_C57BL6NJ_T0066403.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63552485 63556468 - Wdr31 protein_coding retained_intron MGP_C57BL6NJ_T0066404.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63559983 63567857 - MGP_C57BL6NJ_P0066404 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0066405.1 MGP_C57BL6NJ_G0028774.1 mouse_genomes_project 4 63560638 63567835 - MGP_C57BL6NJ_P0066405 Wdr31 protein_coding protein_coding MGP_C57BL6NJ_T0065393.1 MGP_C57BL6NJ_G0028528.1 mouse_genomes_project 4 31720938 31735719 + MGP_C57BL6NJ_P0065393 Ube2j1 protein_coding protein_coding MGP_C57BL6NJ_T0065394.1 MGP_C57BL6NJ_G0028528.1 mouse_genomes_project 4 31720996 31742868 + MGP_C57BL6NJ_P0065394 Ube2j1 protein_coding protein_coding MGP_C57BL6NJ_T0066475.1 MGP_C57BL6NJ_G0028792.1 mouse_genomes_project 4 64771944 64789173 - MGP_C57BL6NJ_P0066475 1700018C11Rik protein_coding protein_coding MGP_C57BL6NJ_T0066476.1 MGP_C57BL6NJ_G0028792.1 mouse_genomes_project 4 64771944 64789185 - MGP_C57BL6NJ_P0066476 1700018C11Rik protein_coding protein_coding MGP_C57BL6NJ_T0069551.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150036232 150161110 - MGP_C57BL6NJ_P0069551 Fhad1 protein_coding protein_coding MGP_C57BL6NJ_T0069552.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150036645 150157680 - MGP_C57BL6NJ_P0069552 Fhad1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069553.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150036645 150157680 - MGP_C57BL6NJ_P0069553 Fhad1 protein_coding protein_coding MGP_C57BL6NJ_T0069554.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150061924 150071509 - Fhad1 protein_coding processed_transcript MGP_C57BL6NJ_T0069555.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150061924 150082176 - MGP_C57BL6NJ_P0069555 Fhad1 protein_coding protein_coding MGP_C57BL6NJ_T0069556.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150077470 150101299 - Fhad1 protein_coding processed_transcript MGP_C57BL6NJ_T0069557.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150081869 150103417 - Fhad1 protein_coding processed_transcript MGP_C57BL6NJ_T0069558.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150112073 150161125 - Fhad1 protein_coding retained_intron MGP_C57BL6NJ_T0069559.1 MGP_C57BL6NJ_G0029487.1 mouse_genomes_project 4 150159820 150161082 - Fhad1 protein_coding processed_transcript MGP_C57BL6NJ_T0014804.1 MGP_C57BL6NJ_G0012849.1 mouse_genomes_project 4 21414031 21416251 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015065.1 MGP_C57BL6NJ_G0013110.1 mouse_genomes_project 4 113113785 113114321 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014848.1 MGP_C57BL6NJ_G0012893.1 mouse_genomes_project 4 33194472 33194926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004664.1 MGP_C57BL6NJ_G0004048.1 mouse_genomes_project 4 114139666 114140085 - Ttc39aos1 antisense antisense MGP_C57BL6NJ_T0004665.1 MGP_C57BL6NJ_G0004048.1 mouse_genomes_project 4 114139681 114142028 - Ttc39aos1 antisense antisense MGP_C57BL6NJ_T0069903.1 MGP_C57BL6NJ_G0029586.1 mouse_genomes_project 4 160436248 160452933 + MGP_C57BL6NJ_P0069903 Errfi1 protein_coding protein_coding MGP_C57BL6NJ_T0069904.1 MGP_C57BL6NJ_G0029586.1 mouse_genomes_project 4 160437402 160438144 + Errfi1 protein_coding processed_transcript MGP_C57BL6NJ_T0069905.1 MGP_C57BL6NJ_G0029586.1 mouse_genomes_project 4 160437402 160452928 + MGP_C57BL6NJ_P0069905 Errfi1 protein_coding protein_coding MGP_C57BL6NJ_T0066178.1 MGP_C57BL6NJ_G0028710.1 mouse_genomes_project 4 51579342 51582893 - MGP_C57BL6NJ_P0066178 protein_coding protein_coding MGP_C57BL6NJ_T0008116.1 MGP_C57BL6NJ_G0006635.1 mouse_genomes_project 4 130691238 130697439 - 4933435F18Rik lincRNA lincRNA MGP_C57BL6NJ_T0008117.1 MGP_C57BL6NJ_G0006635.1 mouse_genomes_project 4 130696336 130697398 - 4933435F18Rik lincRNA lincRNA MGP_C57BL6NJ_T0068850.1 MGP_C57BL6NJ_G0029323.1 mouse_genomes_project 4 140716843 140726342 + MGP_C57BL6NJ_P0068850 Gpatch3 protein_coding protein_coding MGP_C57BL6NJ_T0068851.1 MGP_C57BL6NJ_G0029323.1 mouse_genomes_project 4 140721802 140725109 + Gpatch3 protein_coding processed_transcript MGP_C57BL6NJ_T0014803.1 MGP_C57BL6NJ_G0012848.1 mouse_genomes_project 4 21366917 21368118 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068595.1 MGP_C57BL6NJ_G0029268.1 mouse_genomes_project 4 137071147 137080137 - MGP_C57BL6NJ_P0068595 Hcrtr1 protein_coding protein_coding MGP_C57BL6NJ_T0068596.1 MGP_C57BL6NJ_G0029268.1 mouse_genomes_project 4 137071147 137079526 - MGP_C57BL6NJ_P0068596 Hcrtr1 protein_coding protein_coding MGP_C57BL6NJ_T0068597.1 MGP_C57BL6NJ_G0029268.1 mouse_genomes_project 4 137071147 137080334 - MGP_C57BL6NJ_P0068597 Hcrtr1 protein_coding protein_coding MGP_C57BL6NJ_T0068598.1 MGP_C57BL6NJ_G0029268.1 mouse_genomes_project 4 137071771 137078543 - MGP_C57BL6NJ_P0068598 Hcrtr1 protein_coding protein_coding MGP_C57BL6NJ_T0101678.1 MGP_C57BL6NJ_G0039724.1 mouse_genomes_project 4 76770792 76770924 + Gm26379 snoRNA snoRNA MGP_C57BL6NJ_T0100368.1 MGP_C57BL6NJ_G0038414.1 mouse_genomes_project 4 102316388 102316478 - Gm24960 snRNA snRNA MGP_C57BL6NJ_T0018525.1 MGP_C57BL6NJ_G0015946.1 mouse_genomes_project 4 92417453 92446700 - Gm12602 processed_transcript processed_transcript MGP_C57BL6NJ_T0018526.1 MGP_C57BL6NJ_G0015946.1 mouse_genomes_project 4 92442397 92446655 - Gm12602 processed_transcript processed_transcript MGP_C57BL6NJ_T0066101.1 MGP_C57BL6NJ_G0028688.1 mouse_genomes_project 4 47532918 47542322 - Alg2 protein_coding processed_transcript MGP_C57BL6NJ_T0066102.1 MGP_C57BL6NJ_G0028688.1 mouse_genomes_project 4 47541384 47545882 - MGP_C57BL6NJ_P0066102 Alg2 protein_coding protein_coding MGP_C57BL6NJ_T0066103.1 MGP_C57BL6NJ_G0028688.1 mouse_genomes_project 4 47543445 47545526 - MGP_C57BL6NJ_P0066103 Alg2 protein_coding protein_coding MGP_C57BL6NJ_T0066256.1 MGP_C57BL6NJ_G0028734.1 mouse_genomes_project 4 57617037 57703793 - MGP_C57BL6NJ_P0066256 Tmem245 protein_coding protein_coding MGP_C57BL6NJ_T0066257.1 MGP_C57BL6NJ_G0028734.1 mouse_genomes_project 4 57631083 57692661 - Tmem245 protein_coding processed_transcript MGP_C57BL6NJ_T0066258.1 MGP_C57BL6NJ_G0028734.1 mouse_genomes_project 4 57631083 57678238 - MGP_C57BL6NJ_P0066258 Tmem245 protein_coding protein_coding MGP_C57BL6NJ_T0066259.1 MGP_C57BL6NJ_G0028734.1 mouse_genomes_project 4 57631454 57703767 - MGP_C57BL6NJ_P0066259 Tmem245 protein_coding protein_coding MGP_C57BL6NJ_T0066260.1 MGP_C57BL6NJ_G0028734.1 mouse_genomes_project 4 57636823 57703780 - Tmem245 protein_coding processed_transcript MGP_C57BL6NJ_T0066015.1 MGP_C57BL6NJ_G0028667.1 mouse_genomes_project 4 45710236 45735740 - MGP_C57BL6NJ_P0066015 Igfbpl1 protein_coding protein_coding MGP_C57BL6NJ_T0066016.1 MGP_C57BL6NJ_G0028667.1 mouse_genomes_project 4 45713775 45717132 - Igfbpl1 protein_coding processed_transcript MGP_C57BL6NJ_T0008157.1 MGP_C57BL6NJ_G0006660.1 mouse_genomes_project 4 139246989 139254274 + lincRNA lincRNA MGP_C57BL6NJ_T0100371.1 MGP_C57BL6NJ_G0038417.1 mouse_genomes_project 4 105311039 105311143 + Gm24468 snRNA snRNA MGP_C57BL6NJ_T0067829.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123738890 123786387 - MGP_C57BL6NJ_P0067829 Kdm4a protein_coding protein_coding MGP_C57BL6NJ_T0067830.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123738892 123785998 - MGP_C57BL6NJ_P0067830 Kdm4a protein_coding protein_coding MGP_C57BL6NJ_T0067831.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123738939 123786322 - MGP_C57BL6NJ_P0067831 Kdm4a protein_coding protein_coding MGP_C57BL6NJ_T0067832.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123746210 123786290 - MGP_C57BL6NJ_P0067832 Kdm4a protein_coding protein_coding MGP_C57BL6NJ_T0067833.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123749952 123750927 - Kdm4a protein_coding processed_transcript MGP_C57BL6NJ_T0067834.1 MGP_C57BL6NJ_G0029086.1 mouse_genomes_project 4 123753218 123765834 - Kdm4a protein_coding processed_transcript MGP_C57BL6NJ_T0018505.1 MGP_C57BL6NJ_G0015933.1 mouse_genomes_project 4 33750502 33755860 - Platr9 processed_transcript processed_transcript MGP_C57BL6NJ_T0018506.1 MGP_C57BL6NJ_G0015933.1 mouse_genomes_project 4 33754167 33755860 - Platr9 processed_transcript processed_transcript MGP_C57BL6NJ_T0068791.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140085425 140143802 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068792.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140085671 140160819 + MGP_C57BL6NJ_P0068792 Ahdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068793.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140085671 140161066 + MGP_C57BL6NJ_P0068793 Ahdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068794.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140085708 140144093 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068795.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140085730 140136068 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068796.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140086003 140160601 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068797.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140086215 140143804 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068798.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140086257 140144758 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068799.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140086369 140160606 + MGP_C57BL6NJ_P0068799 Ahdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068800.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140120477 140160215 + MGP_C57BL6NJ_P0068800 Ahdc1 protein_coding protein_coding MGP_C57BL6NJ_T0068801.1 MGP_C57BL6NJ_G0029309.1 mouse_genomes_project 4 140149230 140155050 + Ahdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0014895.1 MGP_C57BL6NJ_G0012940.1 mouse_genomes_project 4 49963770 49964286 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069791.1 MGP_C57BL6NJ_G0029566.1 mouse_genomes_project 4 158491898 158508615 - MGP_C57BL6NJ_P0069791 Pgd protein_coding protein_coding MGP_C57BL6NJ_T0069792.1 MGP_C57BL6NJ_G0029566.1 mouse_genomes_project 4 158497099 158501907 - Pgd protein_coding retained_intron MGP_C57BL6NJ_T0069793.1 MGP_C57BL6NJ_G0029566.1 mouse_genomes_project 4 158501834 158508679 - Pgd protein_coding retained_intron MGP_C57BL6NJ_T0069794.1 MGP_C57BL6NJ_G0029566.1 mouse_genomes_project 4 158502200 158503562 - Pgd protein_coding retained_intron MGP_C57BL6NJ_T0069795.1 MGP_C57BL6NJ_G0029566.1 mouse_genomes_project 4 158503291 158508568 - Pgd protein_coding retained_intron MGP_C57BL6NJ_T0001549.1 MGP_C57BL6NJ_G0001449.1 mouse_genomes_project 4 103261124 103263599 + TEC TEC MGP_C57BL6NJ_T0014799.1 MGP_C57BL6NJ_G0012844.1 mouse_genomes_project 4 20102080 20102586 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015084.1 MGP_C57BL6NJ_G0013129.1 mouse_genomes_project 4 120501077 120503906 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068498.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481292 136488140 + MGP_C57BL6NJ_P0068498 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068499.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481292 136488699 + MGP_C57BL6NJ_P0068499 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068500.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481293 136502226 + MGP_C57BL6NJ_P0068500 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068501.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481304 136489110 + MGP_C57BL6NJ_P0068501 Tmem234 protein_coding protein_coding MGP_C57BL6NJ_T0068502.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481305 136488129 + MGP_C57BL6NJ_P0068502 Tmem234 protein_coding protein_coding MGP_C57BL6NJ_T0068503.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481311 136488319 + MGP_C57BL6NJ_P0068503 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068504.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481315 136488164 + MGP_C57BL6NJ_P0068504 Tmem234 protein_coding protein_coding MGP_C57BL6NJ_T0068505.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481315 136506783 + MGP_C57BL6NJ_P0068505 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068506.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481315 136488398 + MGP_C57BL6NJ_P0068506 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068507.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481319 136488407 + MGP_C57BL6NJ_P0068507 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068508.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481324 136489103 + MGP_C57BL6NJ_P0068508 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068509.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481325 136487744 + MGP_C57BL6NJ_P0068509 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068510.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481326 136488459 + Tmem234 protein_coding retained_intron MGP_C57BL6NJ_T0068511.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481327 136487761 + MGP_C57BL6NJ_P0068511 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068512.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481328 136483313 + Tmem234 protein_coding processed_transcript MGP_C57BL6NJ_T0068513.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481331 136482074 + MGP_C57BL6NJ_P0068513 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068514.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481607 136488275 + MGP_C57BL6NJ_P0068514 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068515.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481607 136482555 + MGP_C57BL6NJ_P0068515 Tmem234 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068516.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481712 136482375 + Tmem234 protein_coding retained_intron MGP_C57BL6NJ_T0068517.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136481816 136482840 + Tmem234 protein_coding retained_intron MGP_C57BL6NJ_T0068518.1 MGP_C57BL6NJ_G0029255.1 mouse_genomes_project 4 136482634 136487912 + Tmem234 protein_coding retained_intron MGP_C57BL6NJ_T0100332.1 MGP_C57BL6NJ_G0038378.1 mouse_genomes_project 4 14336962 14337068 - Gm23975 snRNA snRNA MGP_C57BL6NJ_T0070420.1 MGP_C57BL6NJ_G0029684.1 mouse_genomes_project 4 166321972 166336711 - MGP_C57BL6NJ_P0070420 Samd11 protein_coding protein_coding MGP_C57BL6NJ_T0100384.1 MGP_C57BL6NJ_G0038430.1 mouse_genomes_project 4 122719708 122719824 + Gm25099 snRNA snRNA MGP_C57BL6NJ_T0066104.1 MGP_C57BL6NJ_G0028689.1 mouse_genomes_project 4 47546206 47555025 + MGP_C57BL6NJ_P0066104 Sec61b protein_coding protein_coding MGP_C57BL6NJ_T0066105.1 MGP_C57BL6NJ_G0028689.1 mouse_genomes_project 4 47546496 47552574 + Sec61b protein_coding retained_intron MGP_C57BL6NJ_T0066751.1 MGP_C57BL6NJ_G0028860.1 mouse_genomes_project 4 92455633 92505076 + MGP_C57BL6NJ_P0066751 Mtap protein_coding protein_coding MGP_C57BL6NJ_T0066752.1 MGP_C57BL6NJ_G0028860.1 mouse_genomes_project 4 92500368 92503469 + Mtap protein_coding processed_transcript MGP_C57BL6NJ_T0018582.1 MGP_C57BL6NJ_G0015979.1 mouse_genomes_project 4 165635317 165654726 - Gm16023 processed_transcript processed_transcript MGP_C57BL6NJ_T0018583.1 MGP_C57BL6NJ_G0015979.1 mouse_genomes_project 4 165642991 165654451 - Gm16023 processed_transcript processed_transcript MGP_C57BL6NJ_T0065418.1 MGP_C57BL6NJ_G0028537.1 mouse_genomes_project 4 33357420 33371742 + Akirin2 protein_coding processed_transcript MGP_C57BL6NJ_T0065419.1 MGP_C57BL6NJ_G0028537.1 mouse_genomes_project 4 33357420 33375881 + MGP_C57BL6NJ_P0065419 Akirin2 protein_coding protein_coding MGP_C57BL6NJ_T0015193.1 MGP_C57BL6NJ_G0013238.1 mouse_genomes_project 4 153782679 154072584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101670.1 MGP_C57BL6NJ_G0039716.1 mouse_genomes_project 4 63943096 63943229 + Gm24117 snoRNA snoRNA MGP_C57BL6NJ_T0010841.1 MGP_C57BL6NJ_G0008926.1 mouse_genomes_project 4 84867574 84867684 - Gm22402 miRNA miRNA MGP_C57BL6NJ_T0068356.1 MGP_C57BL6NJ_G0029223.1 mouse_genomes_project 4 134018179 134021552 - MGP_C57BL6NJ_P0068356 Gjb5 protein_coding protein_coding MGP_C57BL6NJ_T0010895.1 MGP_C57BL6NJ_G0008980.1 mouse_genomes_project 4 158935044 158935104 + Mir5616 miRNA miRNA MGP_C57BL6NJ_T0103139.1 MGP_C57BL6NJ_G0040933.1 mouse_genomes_project 4 64495607 64499043 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007965.1 MGP_C57BL6NJ_G0006510.1 mouse_genomes_project 4 253642 265074 - Gm26857 lincRNA lincRNA MGP_C57BL6NJ_T0070166.1 MGP_C57BL6NJ_G0029633.1 mouse_genomes_project 4 164942248 164943697 + MGP_C57BL6NJ_P0070166 Hes5 protein_coding protein_coding MGP_C57BL6NJ_T0070167.1 MGP_C57BL6NJ_G0029633.1 mouse_genomes_project 4 164942296 164942732 + Hes5 protein_coding processed_transcript MGP_C57BL6NJ_T0010900.1 MGP_C57BL6NJ_G0008985.1 mouse_genomes_project 4 165832687 165832813 + Gm27743 miRNA miRNA MGP_C57BL6NJ_T0065235.1 MGP_C57BL6NJ_G0028489.1 mouse_genomes_project 4 15402246 15679211 + MGP_C57BL6NJ_P0065235 Mmp16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065236.1 MGP_C57BL6NJ_G0028489.1 mouse_genomes_project 4 15402444 15557466 + MGP_C57BL6NJ_P0065236 Mmp16 protein_coding protein_coding MGP_C57BL6NJ_T0065237.1 MGP_C57BL6NJ_G0028489.1 mouse_genomes_project 4 15402811 15680899 + MGP_C57BL6NJ_P0065237 Mmp16 protein_coding protein_coding MGP_C57BL6NJ_T0065238.1 MGP_C57BL6NJ_G0028489.1 mouse_genomes_project 4 15402946 15611449 + Mmp16 protein_coding retained_intron MGP_C57BL6NJ_T0065239.1 MGP_C57BL6NJ_G0028489.1 mouse_genomes_project 4 15608524 15655492 + Mmp16 protein_coding retained_intron MGP_C57BL6NJ_T0010847.1 MGP_C57BL6NJ_G0008932.1 mouse_genomes_project 4 102495468 102495594 - Gm22625 miRNA miRNA MGP_C57BL6NJ_T0010833.1 MGP_C57BL6NJ_G0008918.1 mouse_genomes_project 4 45379339 45379407 - Gm22518 miRNA miRNA MGP_C57BL6NJ_T0103178.1 MGP_C57BL6NJ_G0040972.1 mouse_genomes_project 4 152298217 152300134 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100342.1 MGP_C57BL6NJ_G0038388.1 mouse_genomes_project 4 39263636 39263698 - Gm26087 snRNA snRNA MGP_C57BL6NJ_T0066388.1 MGP_C57BL6NJ_G0028771.1 mouse_genomes_project 4 63471061 63497962 - MGP_C57BL6NJ_P0066388 Cdc26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066390.1 MGP_C57BL6NJ_G0028771.1 mouse_genomes_project 4 63482376 63497962 - MGP_C57BL6NJ_P0066390 Cdc26 protein_coding protein_coding MGP_C57BL6NJ_T0066391.1 MGP_C57BL6NJ_G0028771.1 mouse_genomes_project 4 63482427 63497945 - MGP_C57BL6NJ_P0066391 Cdc26 protein_coding protein_coding MGP_C57BL6NJ_T0066392.1 MGP_C57BL6NJ_G0028771.1 mouse_genomes_project 4 63488528 63493234 - Cdc26 protein_coding retained_intron MGP_C57BL6NJ_T0007970.1 MGP_C57BL6NJ_G0006514.1 mouse_genomes_project 4 6215099 6217692 - Gm26548 lincRNA lincRNA MGP_C57BL6NJ_T0010897.1 MGP_C57BL6NJ_G0008982.1 mouse_genomes_project 4 159261073 159261233 + miRNA miRNA MGP_C57BL6NJ_T0001545.1 MGP_C57BL6NJ_G0001445.1 mouse_genomes_project 4 20235382 20239011 + TEC TEC MGP_C57BL6NJ_T0067519.1 MGP_C57BL6NJ_G0029027.1 mouse_genomes_project 4 120936498 120964785 + Cyp4a32 protein_coding processed_transcript MGP_C57BL6NJ_T0067520.1 MGP_C57BL6NJ_G0029027.1 mouse_genomes_project 4 120936504 120973165 + MGP_C57BL6NJ_P0067520 Cyp4a32 protein_coding protein_coding MGP_C57BL6NJ_T0069832.1 MGP_C57BL6NJ_G0029573.1 mouse_genomes_project 4 158987696 159063569 + MGP_C57BL6NJ_P0069832 Clstn1 protein_coding protein_coding MGP_C57BL6NJ_T0069833.1 MGP_C57BL6NJ_G0029573.1 mouse_genomes_project 4 158987866 159062569 + MGP_C57BL6NJ_P0069833 Clstn1 protein_coding protein_coding MGP_C57BL6NJ_T0069834.1 MGP_C57BL6NJ_G0029573.1 mouse_genomes_project 4 158988476 159038531 + Clstn1 protein_coding processed_transcript MGP_C57BL6NJ_T0069835.1 MGP_C57BL6NJ_G0029573.1 mouse_genomes_project 4 159038335 159043379 + Clstn1 protein_coding retained_intron MGP_C57BL6NJ_T0004694.1 MGP_C57BL6NJ_G0004072.1 mouse_genomes_project 4 131389836 131425647 - Gm12930 antisense antisense MGP_C57BL6NJ_T0004572.1 MGP_C57BL6NJ_G0003980.1 mouse_genomes_project 4 3093566 3100240 - 4930430E12Rik antisense antisense MGP_C57BL6NJ_T0004573.1 MGP_C57BL6NJ_G0003980.1 mouse_genomes_project 4 3095484 3100240 - 4930430E12Rik antisense antisense MGP_C57BL6NJ_T0014962.1 MGP_C57BL6NJ_G0013007.1 mouse_genomes_project 4 76070872 76071668 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015059.1 MGP_C57BL6NJ_G0013104.1 mouse_genomes_project 4 111831952 111832388 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015177.1 MGP_C57BL6NJ_G0013222.1 mouse_genomes_project 4 150123104 150123669 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065194.1 MGP_C57BL6NJ_G0028476.1 mouse_genomes_project 4 9242389 9249955 + MGP_C57BL6NJ_P0065194 protein_coding protein_coding MGP_C57BL6NJ_T0070090.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163920466 163925613 - MGP_C57BL6NJ_P0070090 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070091.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163920584 163925909 - MGP_C57BL6NJ_P0070091 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070092.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163920584 163925963 - MGP_C57BL6NJ_P0070092 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070093.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163921452 163926227 - MGP_C57BL6NJ_P0070093 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070094.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163921457 163926149 - MGP_C57BL6NJ_P0070094 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070095.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923306 163925933 - MGP_C57BL6NJ_P0070095 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070096.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923306 163925864 - MGP_C57BL6NJ_P0070096 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070097.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923306 163925613 - MGP_C57BL6NJ_P0070097 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070098.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923307 163924352 - MGP_C57BL6NJ_P0070098 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070099.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923307 163926147 - MGP_C57BL6NJ_P0070099 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070100.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923577 163926034 - MGP_C57BL6NJ_P0070100 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070101.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923695 163925660 - MGP_C57BL6NJ_P0070101 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070102.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163923720 163924320 - MGP_C57BL6NJ_P0070102 Smim1 protein_coding protein_coding MGP_C57BL6NJ_T0070103.1 MGP_C57BL6NJ_G0029619.1 mouse_genomes_project 4 163925302 163925909 - Smim1 protein_coding processed_transcript MGP_C57BL6NJ_T0008149.1 MGP_C57BL6NJ_G0006654.1 mouse_genomes_project 4 137828877 137856274 + Gm12973 lincRNA lincRNA MGP_C57BL6NJ_T0069087.1 MGP_C57BL6NJ_G0029375.1 mouse_genomes_project 4 143266628 143269561 - MGP_C57BL6NJ_P0069087 Pnrc2 protein_coding protein_coding MGP_C57BL6NJ_T0069088.1 MGP_C57BL6NJ_G0029375.1 mouse_genomes_project 4 143268034 143269281 - MGP_C57BL6NJ_P0069088 Pnrc2 protein_coding protein_coding MGP_C57BL6NJ_T0069089.1 MGP_C57BL6NJ_G0029375.1 mouse_genomes_project 4 143268161 143268772 - MGP_C57BL6NJ_P0069089 Pnrc2 protein_coding protein_coding MGP_C57BL6NJ_T0066805.1 MGP_C57BL6NJ_G0028876.1 mouse_genomes_project 4 98755428 98758617 - MGP_C57BL6NJ_P0066805 Jun protein_coding protein_coding MGP_C57BL6NJ_T0008091.1 MGP_C57BL6NJ_G0006615.1 mouse_genomes_project 4 110780721 110781708 + Gm12730 lincRNA lincRNA MGP_C57BL6NJ_T0004617.1 MGP_C57BL6NJ_G0004015.1 mouse_genomes_project 4 53784656 53789576 + 4930522O17Rik antisense antisense MGP_C57BL6NJ_T0004607.1 MGP_C57BL6NJ_G0004007.1 mouse_genomes_project 4 44479368 44500287 + Gm12462 antisense antisense MGP_C57BL6NJ_T0065465.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34059134 34089266 - MGP_C57BL6NJ_P0065465 3110043O21Rik protein_coding protein_coding MGP_C57BL6NJ_T0065466.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34059139 34089567 - MGP_C57BL6NJ_P0065466 3110043O21Rik protein_coding protein_coding MGP_C57BL6NJ_T0065467.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34064897 34073391 - 3110043O21Rik protein_coding retained_intron MGP_C57BL6NJ_T0065468.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34075946 34089619 - 3110043O21Rik protein_coding retained_intron MGP_C57BL6NJ_T0065469.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34081852 34089567 - 3110043O21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065470.1 MGP_C57BL6NJ_G0028548.1 mouse_genomes_project 4 34082036 34089567 - 3110043O21Rik protein_coding processed_transcript MGP_C57BL6NJ_T0014741.1 MGP_C57BL6NJ_G0012786.1 mouse_genomes_project 4 3256472 3256916 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068158.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131160569 131220831 + MGP_C57BL6NJ_P0068158 Inpp5b protein_coding protein_coding MGP_C57BL6NJ_T0068159.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131160577 131170251 + MGP_C57BL6NJ_P0068159 Inpp5b protein_coding protein_coding MGP_C57BL6NJ_T0068160.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131160591 131220825 + MGP_C57BL6NJ_P0068160 Inpp5b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068161.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131160597 131170213 + MGP_C57BL6NJ_P0068161 Inpp5b protein_coding protein_coding MGP_C57BL6NJ_T0068162.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131187746 131201760 + Inpp5b protein_coding processed_transcript MGP_C57BL6NJ_T0068163.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131187852 131201813 + Inpp5b protein_coding processed_transcript MGP_C57BL6NJ_T0068164.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131214604 131217214 + Inpp5b protein_coding processed_transcript MGP_C57BL6NJ_T0068165.1 MGP_C57BL6NJ_G0029177.1 mouse_genomes_project 4 131218867 131220430 + Inpp5b protein_coding processed_transcript MGP_C57BL6NJ_T0099107.1 MGP_C57BL6NJ_G0037171.1 mouse_genomes_project 4 131240884 131241003 + n-R5s192 rRNA rRNA MGP_C57BL6NJ_T0067701.1 MGP_C57BL6NJ_G0029063.1 mouse_genomes_project 4 122487693 122502823 + MGP_C57BL6NJ_P0067701 Hectd3 protein_coding protein_coding MGP_C57BL6NJ_T0067702.1 MGP_C57BL6NJ_G0029063.1 mouse_genomes_project 4 122493713 122497867 + Hectd3 protein_coding retained_intron MGP_C57BL6NJ_T0067703.1 MGP_C57BL6NJ_G0029063.1 mouse_genomes_project 4 122500401 122500995 + Hectd3 protein_coding retained_intron MGP_C57BL6NJ_T0004674.1 MGP_C57BL6NJ_G0004056.1 mouse_genomes_project 4 122838662 122840571 + Gm12843 antisense antisense MGP_C57BL6NJ_T0004675.1 MGP_C57BL6NJ_G0004056.1 mouse_genomes_project 4 122838989 122840219 + Gm12843 antisense antisense MGP_C57BL6NJ_T0066083.1 MGP_C57BL6NJ_G0028684.1 mouse_genomes_project 4 47041337 47084496 - MGP_C57BL6NJ_P0066083 Anks6 protein_coding protein_coding MGP_C57BL6NJ_T0066084.1 MGP_C57BL6NJ_G0028684.1 mouse_genomes_project 4 47041357 47084496 - MGP_C57BL6NJ_P0066084 Anks6 protein_coding protein_coding MGP_C57BL6NJ_T0066085.1 MGP_C57BL6NJ_G0028684.1 mouse_genomes_project 4 47042668 47051384 - Anks6 protein_coding processed_transcript MGP_C57BL6NJ_T0066086.1 MGP_C57BL6NJ_G0028684.1 mouse_genomes_project 4 47064098 47065817 - Anks6 protein_coding processed_transcript MGP_C57BL6NJ_T0065884.1 MGP_C57BL6NJ_G0028643.1 mouse_genomes_project 4 43542909 43543866 - MGP_C57BL6NJ_P0065884 Olfr156 protein_coding protein_coding MGP_C57BL6NJ_T0066130.1 MGP_C57BL6NJ_G0028695.1 mouse_genomes_project 4 48658639 48682015 + MGP_C57BL6NJ_P0066130 Msantd3 protein_coding protein_coding MGP_C57BL6NJ_T0066131.1 MGP_C57BL6NJ_G0028695.1 mouse_genomes_project 4 48658783 48681674 + MGP_C57BL6NJ_P0066131 Msantd3 protein_coding protein_coding MGP_C57BL6NJ_T0066132.1 MGP_C57BL6NJ_G0028695.1 mouse_genomes_project 4 48659192 48682016 + MGP_C57BL6NJ_P0066132 Msantd3 protein_coding protein_coding MGP_C57BL6NJ_T0066133.1 MGP_C57BL6NJ_G0028695.1 mouse_genomes_project 4 48659239 48672650 + Msantd3 protein_coding processed_transcript MGP_C57BL6NJ_T0066134.1 MGP_C57BL6NJ_G0028695.1 mouse_genomes_project 4 48680043 48682015 + Msantd3 protein_coding processed_transcript MGP_C57BL6NJ_T0018534.1 MGP_C57BL6NJ_G0015953.1 mouse_genomes_project 4 99708073 99719474 - 9530080O11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018535.1 MGP_C57BL6NJ_G0015953.1 mouse_genomes_project 4 99708601 99718854 - 9530080O11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0004600.1 MGP_C57BL6NJ_G0004002.1 mouse_genomes_project 4 41346918 41469137 + antisense antisense MGP_C57BL6NJ_T0014978.1 MGP_C57BL6NJ_G0013023.1 mouse_genomes_project 4 79280438 79280783 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011844.1 MGP_C57BL6NJ_G0009929.1 mouse_genomes_project 4 127052304 127052623 + Gm22982 misc_RNA misc_RNA MGP_C57BL6NJ_T0014807.1 MGP_C57BL6NJ_G0012852.1 mouse_genomes_project 4 22438302 22440018 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070071.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850634 163855323 + MGP_C57BL6NJ_P0070071 A430005L14Rik protein_coding protein_coding MGP_C57BL6NJ_T0070072.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850634 163855316 + MGP_C57BL6NJ_P0070072 A430005L14Rik protein_coding protein_coding MGP_C57BL6NJ_T0070073.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850652 163853464 + A430005L14Rik protein_coding retained_intron MGP_C57BL6NJ_T0070074.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850663 163854909 + MGP_C57BL6NJ_P0070074 A430005L14Rik protein_coding protein_coding MGP_C57BL6NJ_T0070075.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850663 163855201 + MGP_C57BL6NJ_P0070075 A430005L14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070076.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163850726 163854132 + A430005L14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070077.1 MGP_C57BL6NJ_G0029615.1 mouse_genomes_project 4 163853189 163854487 + A430005L14Rik protein_coding retained_intron MGP_C57BL6NJ_T0004650.1 MGP_C57BL6NJ_G0004038.1 mouse_genomes_project 4 107258297 107282137 - Gm12709 antisense antisense MGP_C57BL6NJ_T0014869.1 MGP_C57BL6NJ_G0012914.1 mouse_genomes_project 4 39387973 39388391 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015137.1 MGP_C57BL6NJ_G0013182.1 mouse_genomes_project 4 133167181 133167482 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008209.1 MGP_C57BL6NJ_G0006702.1 mouse_genomes_project 4 164807598 164809785 + lincRNA lincRNA MGP_C57BL6NJ_T0069595.1 MGP_C57BL6NJ_G0029506.1 mouse_genomes_project 4 152190035 152192373 - MGP_C57BL6NJ_P0069595 protein_coding protein_coding MGP_C57BL6NJ_T0067188.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876071 111928807 + MGP_C57BL6NJ_P0067188 Yipf1 protein_coding protein_coding MGP_C57BL6NJ_T0067189.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876077 111883148 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067190.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876092 111919917 + MGP_C57BL6NJ_P0067190 Yipf1 protein_coding protein_coding MGP_C57BL6NJ_T0067191.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876120 111907671 + MGP_C57BL6NJ_P0067191 Yipf1 protein_coding protein_coding MGP_C57BL6NJ_T0067192.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876145 111880725 + MGP_C57BL6NJ_P0067192 Yipf1 protein_coding protein_coding MGP_C57BL6NJ_T0067193.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111876840 111877546 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067194.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111877471 111907282 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067195.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111880679 111928808 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067196.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111886179 111899106 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067197.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111905714 111921034 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0067198.1 MGP_C57BL6NJ_G0028960.1 mouse_genomes_project 4 111907157 111928807 + Yipf1 protein_coding processed_transcript MGP_C57BL6NJ_T0010888.1 MGP_C57BL6NJ_G0008973.1 mouse_genomes_project 4 147545636 147545706 + Mir7020 miRNA miRNA MGP_C57BL6NJ_T0008156.1 MGP_C57BL6NJ_G0006659.1 mouse_genomes_project 4 138982907 138983691 + Gm13063 lincRNA lincRNA MGP_C57BL6NJ_T0068086.1 MGP_C57BL6NJ_G0029157.1 mouse_genomes_project 4 129353467 129355015 + MGP_C57BL6NJ_P0068086 Oxct2a protein_coding protein_coding MGP_C57BL6NJ_T0000476.1 MGP_C57BL6NJ_G0000395.1 mouse_genomes_project 4 82627743 82627806 + mt-Tt Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0015062.1 MGP_C57BL6NJ_G0013107.1 mouse_genomes_project 4 112347085 112347526 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065415.1 MGP_C57BL6NJ_G0028536.1 mouse_genomes_project 4 32807788 32832955 - MGP_C57BL6NJ_P0065415 Spaca1 protein_coding protein_coding MGP_C57BL6NJ_T0065416.1 MGP_C57BL6NJ_G0028536.1 mouse_genomes_project 4 32807790 32822517 - MGP_C57BL6NJ_P0065416 Spaca1 protein_coding protein_coding MGP_C57BL6NJ_T0065417.1 MGP_C57BL6NJ_G0028536.1 mouse_genomes_project 4 32811228 32833107 - MGP_C57BL6NJ_P0065417 Spaca1 protein_coding protein_coding MGP_C57BL6NJ_T0100388.1 MGP_C57BL6NJ_G0038434.1 mouse_genomes_project 4 126799285 126799389 + Gm24678 snRNA snRNA MGP_C57BL6NJ_T0004613.1 MGP_C57BL6NJ_G0004012.1 mouse_genomes_project 4 46243151 46290397 - Gm12446 antisense antisense MGP_C57BL6NJ_T0004614.1 MGP_C57BL6NJ_G0004012.1 mouse_genomes_project 4 46274246 46292835 - Gm12446 antisense antisense MGP_C57BL6NJ_T0066987.1 MGP_C57BL6NJ_G0028920.1 mouse_genomes_project 4 106160637 106163721 - MGP_C57BL6NJ_P0066987 Gm12790 protein_coding protein_coding MGP_C57BL6NJ_T0066186.1 MGP_C57BL6NJ_G0028713.1 mouse_genomes_project 4 53336011 53336971 + MGP_C57BL6NJ_P0066186 Olfr275 protein_coding protein_coding MGP_C57BL6NJ_T0066520.1 MGP_C57BL6NJ_G0028807.1 mouse_genomes_project 4 75661652 75737271 - MGP_C57BL6NJ_P0066520 Rasef protein_coding protein_coding MGP_C57BL6NJ_T0066521.1 MGP_C57BL6NJ_G0028807.1 mouse_genomes_project 4 75661652 75737378 - MGP_C57BL6NJ_P0066521 Rasef protein_coding protein_coding MGP_C57BL6NJ_T0066841.1 MGP_C57BL6NJ_G0028881.1 mouse_genomes_project 4 99944477 99984873 - MGP_C57BL6NJ_P0066841 Cyp2j7 protein_coding protein_coding MGP_C57BL6NJ_T0014811.1 MGP_C57BL6NJ_G0012856.1 mouse_genomes_project 4 23649990 23654184 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008133.1 MGP_C57BL6NJ_G0006643.1 mouse_genomes_project 4 134526326 134527862 - 1700112K13Rik lincRNA lincRNA MGP_C57BL6NJ_T0014936.1 MGP_C57BL6NJ_G0012981.1 mouse_genomes_project 4 60476473 60476741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100347.1 MGP_C57BL6NJ_G0038393.1 mouse_genomes_project 4 42824515 42824580 - Gm25010 snRNA snRNA MGP_C57BL6NJ_T0014901.1 MGP_C57BL6NJ_G0012946.1 mouse_genomes_project 4 51581208 51582771 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067636.1 MGP_C57BL6NJ_G0029051.1 mouse_genomes_project 4 122043858 122047406 + Ccdc17 protein_coding processed_transcript MGP_C57BL6NJ_T0067637.1 MGP_C57BL6NJ_G0029051.1 mouse_genomes_project 4 122043934 122047471 + MGP_C57BL6NJ_P0067637 Ccdc17 protein_coding protein_coding MGP_C57BL6NJ_T0067638.1 MGP_C57BL6NJ_G0029051.1 mouse_genomes_project 4 122044007 122045405 + Ccdc17 protein_coding processed_transcript MGP_C57BL6NJ_T0067639.1 MGP_C57BL6NJ_G0029051.1 mouse_genomes_project 4 122044964 122047427 + Ccdc17 protein_coding processed_transcript MGP_C57BL6NJ_T0067640.1 MGP_C57BL6NJ_G0029051.1 mouse_genomes_project 4 122045696 122046369 + Ccdc17 protein_coding processed_transcript MGP_C57BL6NJ_T0004713.1 MGP_C57BL6NJ_G0004087.1 mouse_genomes_project 4 142489179 142490044 - Gm16224 antisense antisense MGP_C57BL6NJ_T0008110.1 MGP_C57BL6NJ_G0006629.1 mouse_genomes_project 4 124737521 124738347 - Gm12862 lincRNA lincRNA MGP_C57BL6NJ_T0014937.1 MGP_C57BL6NJ_G0012982.1 mouse_genomes_project 4 62868317 62869467 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015090.1 MGP_C57BL6NJ_G0013135.1 mouse_genomes_project 4 121885796 121886213 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066417.1 MGP_C57BL6NJ_G0028779.1 mouse_genomes_project 4 63626890 63651838 + MGP_C57BL6NJ_P0066417 4933430I17Rik protein_coding protein_coding MGP_C57BL6NJ_T0066859.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101668850 101909722 + MGP_C57BL6NJ_P0066859 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066860.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101676187 102037006 + MGP_C57BL6NJ_P0066860 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066861.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101676205 102037009 + MGP_C57BL6NJ_P0066861 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066862.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101676382 102037006 + MGP_C57BL6NJ_P0066862 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066863.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101676398 102037006 + MGP_C57BL6NJ_P0066863 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066864.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101676413 102037006 + MGP_C57BL6NJ_P0066864 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066865.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101784342 101978158 + MGP_C57BL6NJ_P0066865 Nfia protein_coding protein_coding MGP_C57BL6NJ_T0066866.1 MGP_C57BL6NJ_G0028890.1 mouse_genomes_project 4 101815498 101952939 + Nfia protein_coding processed_transcript MGP_C57BL6NJ_T0067889.1 MGP_C57BL6NJ_G0029103.1 mouse_genomes_project 4 124417056 124417998 - MGP_C57BL6NJ_P0067889 Olfr1338 protein_coding protein_coding MGP_C57BL6NJ_T0004581.1 MGP_C57BL6NJ_G0003987.1 mouse_genomes_project 4 12252690 12303839 + antisense antisense MGP_C57BL6NJ_T0004582.1 MGP_C57BL6NJ_G0003987.1 mouse_genomes_project 4 12259718 12303976 + antisense antisense MGP_C57BL6NJ_T0004583.1 MGP_C57BL6NJ_G0003987.1 mouse_genomes_project 4 12259733 12303851 + antisense antisense MGP_C57BL6NJ_T0004736.1 MGP_C57BL6NJ_G0004106.1 mouse_genomes_project 4 150129230 150133036 + Fhad1os1 antisense antisense MGP_C57BL6NJ_T0004630.1 MGP_C57BL6NJ_G0004028.1 mouse_genomes_project 4 89589098 89590457 + Saxo1os antisense antisense MGP_C57BL6NJ_T0015095.1 MGP_C57BL6NJ_G0013140.1 mouse_genomes_project 4 122431039 122431842 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069622.1 MGP_C57BL6NJ_G0029527.1 mouse_genomes_project 4 153237358 153269174 + Dhrs3 protein_coding processed_transcript MGP_C57BL6NJ_T0069623.1 MGP_C57BL6NJ_G0029527.1 mouse_genomes_project 4 153237364 153269100 + MGP_C57BL6NJ_P0069623 Dhrs3 protein_coding protein_coding MGP_C57BL6NJ_T0069624.1 MGP_C57BL6NJ_G0029527.1 mouse_genomes_project 4 153237446 153279396 + MGP_C57BL6NJ_P0069624 Dhrs3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069625.1 MGP_C57BL6NJ_G0029527.1 mouse_genomes_project 4 153237742 153279406 + MGP_C57BL6NJ_P0069625 Dhrs3 protein_coding protein_coding MGP_C57BL6NJ_T0069626.1 MGP_C57BL6NJ_G0029527.1 mouse_genomes_project 4 153268080 153269174 + Dhrs3 protein_coding retained_intron MGP_C57BL6NJ_T0067973.1 MGP_C57BL6NJ_G0029124.1 mouse_genomes_project 4 125241218 125270742 - MGP_C57BL6NJ_P0067973 Rimkla protein_coding protein_coding MGP_C57BL6NJ_T0067974.1 MGP_C57BL6NJ_G0029124.1 mouse_genomes_project 4 125251737 125270623 - Rimkla protein_coding processed_transcript MGP_C57BL6NJ_T0065769.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43069833 43071949 - MGP_C57BL6NJ_P0065769 Fam166b protein_coding protein_coding MGP_C57BL6NJ_T0065770.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43069890 43071932 - MGP_C57BL6NJ_P0065770 Fam166b protein_coding protein_coding MGP_C57BL6NJ_T0065771.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43069954 43070842 - MGP_C57BL6NJ_P0065771 Fam166b protein_coding protein_coding MGP_C57BL6NJ_T0065772.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43069954 43071904 - MGP_C57BL6NJ_P0065772 Fam166b protein_coding protein_coding MGP_C57BL6NJ_T0065773.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43069997 43071904 - MGP_C57BL6NJ_P0065773 Fam166b protein_coding protein_coding MGP_C57BL6NJ_T0065774.1 MGP_C57BL6NJ_G0028621.1 mouse_genomes_project 4 43070402 43071904 - MGP_C57BL6NJ_P0065774 Fam166b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101721.1 MGP_C57BL6NJ_G0039767.1 mouse_genomes_project 4 164048794 164048938 + Gm26036 snoRNA snoRNA MGP_C57BL6NJ_T0067480.1 MGP_C57BL6NJ_G0029013.1 mouse_genomes_project 4 119323133 119428491 + MGP_C57BL6NJ_P0067480 Skint11 protein_coding protein_coding MGP_C57BL6NJ_T0067481.1 MGP_C57BL6NJ_G0029013.1 mouse_genomes_project 4 119323214 119425312 + MGP_C57BL6NJ_P0067481 Skint11 protein_coding protein_coding MGP_C57BL6NJ_T0067482.1 MGP_C57BL6NJ_G0029013.1 mouse_genomes_project 4 119323214 119425374 + MGP_C57BL6NJ_P0067482 Skint11 protein_coding protein_coding MGP_C57BL6NJ_T0014783.1 MGP_C57BL6NJ_G0012828.1 mouse_genomes_project 4 14760205 14760466 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015006.1 MGP_C57BL6NJ_G0013051.1 mouse_genomes_project 4 93752010 93753715 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067920.1 MGP_C57BL6NJ_G0029115.1 mouse_genomes_project 4 124957632 124986751 - AU022252 protein_coding processed_transcript MGP_C57BL6NJ_T0067922.1 MGP_C57BL6NJ_G0029115.1 mouse_genomes_project 4 124973904 124986755 - MGP_C57BL6NJ_P0067922 AU022252 protein_coding protein_coding MGP_C57BL6NJ_T0067923.1 MGP_C57BL6NJ_G0029115.1 mouse_genomes_project 4 124980424 124986721 - AU022252 protein_coding processed_transcript MGP_C57BL6NJ_T0067924.1 MGP_C57BL6NJ_G0029115.1 mouse_genomes_project 4 124980514 124986728 - AU022252 protein_coding processed_transcript MGP_C57BL6NJ_T0068153.1 MGP_C57BL6NJ_G0029175.1 mouse_genomes_project 4 131112971 131120325 + MGP_C57BL6NJ_P0068153 Fhl3 protein_coding protein_coding MGP_C57BL6NJ_T0068154.1 MGP_C57BL6NJ_G0029175.1 mouse_genomes_project 4 131117842 131120357 + MGP_C57BL6NJ_P0068154 Fhl3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0018541.1 MGP_C57BL6NJ_G0015959.1 mouse_genomes_project 4 114404206 114414384 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018542.1 MGP_C57BL6NJ_G0015959.1 mouse_genomes_project 4 114405161 114414410 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018543.1 MGP_C57BL6NJ_G0015959.1 mouse_genomes_project 4 114405290 114410688 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018544.1 MGP_C57BL6NJ_G0015959.1 mouse_genomes_project 4 114409507 114414165 - processed_transcript processed_transcript MGP_C57BL6NJ_T0065821.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43214007 43246148 - MGP_C57BL6NJ_P0065821 Tln1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065822.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43214018 43246395 - MGP_C57BL6NJ_P0065822 Tln1 protein_coding protein_coding MGP_C57BL6NJ_T0065823.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43229374 43231612 - MGP_C57BL6NJ_P0065823 Tln1 protein_coding protein_coding MGP_C57BL6NJ_T0065824.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43230786 43235236 - MGP_C57BL6NJ_P0065824 Tln1 protein_coding protein_coding MGP_C57BL6NJ_T0065825.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43237415 43238416 - Tln1 protein_coding processed_transcript MGP_C57BL6NJ_T0065826.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43238478 43246130 - Tln1 protein_coding processed_transcript MGP_C57BL6NJ_T0065827.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43239070 43242425 - MGP_C57BL6NJ_P0065827 Tln1 protein_coding protein_coding MGP_C57BL6NJ_T0065828.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43239528 43239911 - Tln1 protein_coding processed_transcript MGP_C57BL6NJ_T0065829.1 MGP_C57BL6NJ_G0028629.1 mouse_genomes_project 4 43243307 43246664 - Tln1 protein_coding processed_transcript MGP_C57BL6NJ_T0015028.1 MGP_C57BL6NJ_G0013073.1 mouse_genomes_project 4 102155784 102156330 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067893.1 MGP_C57BL6NJ_G0029106.1 mouse_genomes_project 4 124504472 124524429 - MGP_C57BL6NJ_P0067893 protein_coding protein_coding MGP_C57BL6NJ_T0004679.1 MGP_C57BL6NJ_G0004060.1 mouse_genomes_project 4 124268009 124271225 - Gm12853 antisense antisense MGP_C57BL6NJ_T0014877.1 MGP_C57BL6NJ_G0012922.1 mouse_genomes_project 4 44107936 44108568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070021.1 MGP_C57BL6NJ_G0029608.1 mouse_genomes_project 4 162022777 162032672 + MGP_C57BL6NJ_P0070021 Icmt protein_coding protein_coding MGP_C57BL6NJ_T0070022.1 MGP_C57BL6NJ_G0029608.1 mouse_genomes_project 4 162022854 162032671 + MGP_C57BL6NJ_P0070022 Icmt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070023.1 MGP_C57BL6NJ_G0029608.1 mouse_genomes_project 4 162023206 162026305 + Icmt protein_coding processed_transcript MGP_C57BL6NJ_T0070024.1 MGP_C57BL6NJ_G0029608.1 mouse_genomes_project 4 162030937 162032619 + Icmt protein_coding processed_transcript MGP_C57BL6NJ_T0008010.1 MGP_C57BL6NJ_G0006549.1 mouse_genomes_project 4 45529883 45532252 + lincRNA lincRNA MGP_C57BL6NJ_T0015113.1 MGP_C57BL6NJ_G0013158.1 mouse_genomes_project 4 126797058 126797496 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067170.1 MGP_C57BL6NJ_G0028956.1 mouse_genomes_project 4 111763583 111772464 + MGP_C57BL6NJ_P0067170 Ldlrad1 protein_coding protein_coding MGP_C57BL6NJ_T0067652.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122152824 122168095 + MGP_C57BL6NJ_P0067652 Prdx1 protein_coding protein_coding MGP_C57BL6NJ_T0067653.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122152879 122155178 + Prdx1 protein_coding retained_intron MGP_C57BL6NJ_T0067654.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122152879 122161123 + MGP_C57BL6NJ_P0067654 Prdx1 protein_coding protein_coding MGP_C57BL6NJ_T0067655.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122153141 122160273 + MGP_C57BL6NJ_P0067655 Prdx1 protein_coding protein_coding MGP_C57BL6NJ_T0067656.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122153167 122166553 + MGP_C57BL6NJ_P0067656 Prdx1 protein_coding protein_coding MGP_C57BL6NJ_T0067657.1 MGP_C57BL6NJ_G0029054.1 mouse_genomes_project 4 122154592 122166467 + MGP_C57BL6NJ_P0067657 Prdx1 protein_coding protein_coding MGP_C57BL6NJ_T0066061.1 MGP_C57BL6NJ_G0028679.1 mouse_genomes_project 4 46462588 46478318 + MGP_C57BL6NJ_P0066061 Nans protein_coding protein_coding MGP_C57BL6NJ_T0066062.1 MGP_C57BL6NJ_G0028679.1 mouse_genomes_project 4 46462659 46468477 + Nans protein_coding processed_transcript MGP_C57BL6NJ_T0066063.1 MGP_C57BL6NJ_G0028679.1 mouse_genomes_project 4 46462714 46472423 + Nans protein_coding processed_transcript MGP_C57BL6NJ_T0066064.1 MGP_C57BL6NJ_G0028679.1 mouse_genomes_project 4 46463325 46474086 + Nans protein_coding processed_transcript MGP_C57BL6NJ_T0008174.1 MGP_C57BL6NJ_G0006668.1 mouse_genomes_project 4 143868948 143870543 - Gm27022 lincRNA lincRNA MGP_C57BL6NJ_T0014918.1 MGP_C57BL6NJ_G0012963.1 mouse_genomes_project 4 55453432 55455017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068055.1 MGP_C57BL6NJ_G0029146.1 mouse_genomes_project 4 127062522 127106732 - MGP_C57BL6NJ_P0068055 Rlf protein_coding protein_coding MGP_C57BL6NJ_T0068056.1 MGP_C57BL6NJ_G0029146.1 mouse_genomes_project 4 127063034 127136528 - MGP_C57BL6NJ_P0068056 Rlf protein_coding protein_coding MGP_C57BL6NJ_T0068057.1 MGP_C57BL6NJ_G0029146.1 mouse_genomes_project 4 127090521 127106732 - MGP_C57BL6NJ_P0068057 Rlf protein_coding protein_coding MGP_C57BL6NJ_T0065670.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42518934 42543902 + Phf24 protein_coding processed_transcript MGP_C57BL6NJ_T0065671.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42518955 42539807 + MGP_C57BL6NJ_P0065671 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065672.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42518968 42550754 + MGP_C57BL6NJ_P0065672 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065673.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42519525 42550754 + MGP_C57BL6NJ_P0065673 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065674.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42519544 42550754 + MGP_C57BL6NJ_P0065674 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065675.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42519608 42546359 + MGP_C57BL6NJ_P0065675 Phf24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065676.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42524516 42539773 + MGP_C57BL6NJ_P0065676 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065677.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42539894 42545515 + MGP_C57BL6NJ_P0065677 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0065678.1 MGP_C57BL6NJ_G0028610.1 mouse_genomes_project 4 42544255 42545835 + MGP_C57BL6NJ_P0065678 Phf24 protein_coding protein_coding MGP_C57BL6NJ_T0101692.1 MGP_C57BL6NJ_G0039738.1 mouse_genomes_project 4 114275287 114275418 + Gm22497 snoRNA snoRNA MGP_C57BL6NJ_T0014740.1 MGP_C57BL6NJ_G0012785.1 mouse_genomes_project 4 3001484 3002359 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015139.1 MGP_C57BL6NJ_G0013184.1 mouse_genomes_project 4 133596283 133596448 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014839.1 MGP_C57BL6NJ_G0012884.1 mouse_genomes_project 4 31257046 31257421 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066893.1 MGP_C57BL6NJ_G0028896.1 mouse_genomes_project 4 102886671 102903246 + MGP_C57BL6NJ_P0066893 protein_coding protein_coding MGP_C57BL6NJ_T0066894.1 MGP_C57BL6NJ_G0028896.1 mouse_genomes_project 4 102886740 102903246 + MGP_C57BL6NJ_P0066894 protein_coding protein_coding MGP_C57BL6NJ_T0066895.1 MGP_C57BL6NJ_G0028896.1 mouse_genomes_project 4 102886825 102894639 + MGP_C57BL6NJ_P0066895 protein_coding protein_coding MGP_C57BL6NJ_T0066896.1 MGP_C57BL6NJ_G0028896.1 mouse_genomes_project 4 102886963 102903245 + MGP_C57BL6NJ_P0066896 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066897.1 MGP_C57BL6NJ_G0028896.1 mouse_genomes_project 4 102894465 102897250 + MGP_C57BL6NJ_P0066897 protein_coding protein_coding MGP_C57BL6NJ_T0014942.1 MGP_C57BL6NJ_G0012987.1 mouse_genomes_project 4 66261499 66261857 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004762.1 MGP_C57BL6NJ_G0004125.1 mouse_genomes_project 4 160095883 160097560 - Gm13091 antisense antisense MGP_C57BL6NJ_T0015009.1 MGP_C57BL6NJ_G0013054.1 mouse_genomes_project 4 93963261 93963885 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067020.1 MGP_C57BL6NJ_G0028925.1 mouse_genomes_project 4 107322462 107329640 - MGP_C57BL6NJ_P0067020 Insl5 protein_coding protein_coding MGP_C57BL6NJ_T0067021.1 MGP_C57BL6NJ_G0028925.1 mouse_genomes_project 4 107322704 107329745 - MGP_C57BL6NJ_P0067021 Insl5 protein_coding protein_coding MGP_C57BL6NJ_T0103172.1 MGP_C57BL6NJ_G0040966.1 mouse_genomes_project 4 151658461 151659531 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008100.1 MGP_C57BL6NJ_G0006620.1 mouse_genomes_project 4 112376386 112382588 + 4933424M12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008101.1 MGP_C57BL6NJ_G0006620.1 mouse_genomes_project 4 112380515 112382588 + 4933424M12Rik lincRNA lincRNA MGP_C57BL6NJ_T0070263.1 MGP_C57BL6NJ_G0029648.1 mouse_genomes_project 4 165641383 165677306 - MGP_C57BL6NJ_P0070263 Gm10563 protein_coding protein_coding MGP_C57BL6NJ_T0008072.1 MGP_C57BL6NJ_G0006600.1 mouse_genomes_project 4 98912921 98929470 + Gm12708 lincRNA lincRNA MGP_C57BL6NJ_T0008073.1 MGP_C57BL6NJ_G0006600.1 mouse_genomes_project 4 98912970 98925991 + Gm12708 lincRNA lincRNA MGP_C57BL6NJ_T0067579.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121474655 121496412 + MGP_C57BL6NJ_P0067579 Lrrc41 protein_coding protein_coding MGP_C57BL6NJ_T0067580.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121474849 121482425 + Lrrc41 protein_coding processed_transcript MGP_C57BL6NJ_T0067581.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121474931 121487898 + Lrrc41 protein_coding processed_transcript MGP_C57BL6NJ_T0067582.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121476271 121487967 + Lrrc41 protein_coding processed_transcript MGP_C57BL6NJ_T0067583.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121478784 121482423 + Lrrc41 protein_coding processed_transcript MGP_C57BL6NJ_T0067584.1 MGP_C57BL6NJ_G0029040.1 mouse_genomes_project 4 121488850 121492678 + Lrrc41 protein_coding processed_transcript MGP_C57BL6NJ_T0067286.1 MGP_C57BL6NJ_G0028976.1 mouse_genomes_project 4 113048083 113054640 - MGP_C57BL6NJ_P0067286 Gpx7 protein_coding protein_coding MGP_C57BL6NJ_T0067287.1 MGP_C57BL6NJ_G0028976.1 mouse_genomes_project 4 113048542 113054403 - MGP_C57BL6NJ_P0067287 Gpx7 protein_coding protein_coding MGP_C57BL6NJ_T0004727.1 MGP_C57BL6NJ_G0004099.1 mouse_genomes_project 4 148989955 149001365 - Gm13031 antisense antisense MGP_C57BL6NJ_T0001541.1 MGP_C57BL6NJ_G0001441.1 mouse_genomes_project 4 3120731 3121006 + TEC TEC MGP_C57BL6NJ_T0004759.1 MGP_C57BL6NJ_G0004122.1 mouse_genomes_project 4 158964129 158966300 - Gm13066 antisense antisense MGP_C57BL6NJ_T0008048.1 MGP_C57BL6NJ_G0006580.1 mouse_genomes_project 4 73739110 73755683 + lincRNA lincRNA MGP_C57BL6NJ_T0067775.1 MGP_C57BL6NJ_G0029076.1 mouse_genomes_project 4 123282180 123284641 + MGP_C57BL6NJ_P0067775 Gm12845 protein_coding protein_coding MGP_C57BL6NJ_T0010860.1 MGP_C57BL6NJ_G0008945.1 mouse_genomes_project 4 126879189 126879253 - Mir7015 miRNA miRNA MGP_C57BL6NJ_T0014854.1 MGP_C57BL6NJ_G0012899.1 mouse_genomes_project 4 34309335 34309903 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011843.1 MGP_C57BL6NJ_G0009928.1 mouse_genomes_project 4 122402207 122402474 + Gm25435 misc_RNA misc_RNA MGP_C57BL6NJ_T0008111.1 MGP_C57BL6NJ_G0006630.1 mouse_genomes_project 4 124801618 124819165 - Gm12866 lincRNA lincRNA MGP_C57BL6NJ_T0066867.1 MGP_C57BL6NJ_G0028891.1 mouse_genomes_project 4 102285683 102304643 - MGP_C57BL6NJ_P0066867 Tm2d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066868.1 MGP_C57BL6NJ_G0028891.1 mouse_genomes_project 4 102285683 102316047 - MGP_C57BL6NJ_P0066868 Tm2d1 protein_coding protein_coding MGP_C57BL6NJ_T0066869.1 MGP_C57BL6NJ_G0028891.1 mouse_genomes_project 4 102285683 102316233 - MGP_C57BL6NJ_P0066869 Tm2d1 protein_coding protein_coding MGP_C57BL6NJ_T0066870.1 MGP_C57BL6NJ_G0028891.1 mouse_genomes_project 4 102285683 102316293 - MGP_C57BL6NJ_P0066870 Tm2d1 protein_coding protein_coding MGP_C57BL6NJ_T0066871.1 MGP_C57BL6NJ_G0028891.1 mouse_genomes_project 4 102285918 102316219 - MGP_C57BL6NJ_P0066871 Tm2d1 protein_coding protein_coding MGP_C57BL6NJ_T0066986.1 MGP_C57BL6NJ_G0028919.1 mouse_genomes_project 4 106126718 106129791 + MGP_C57BL6NJ_P0066986 protein_coding protein_coding MGP_C57BL6NJ_T0065457.1 MGP_C57BL6NJ_G0028544.1 mouse_genomes_project 4 33632343 33718343 - MGP_C57BL6NJ_P0065457 Zfp292 protein_coding protein_coding MGP_C57BL6NJ_T0065458.1 MGP_C57BL6NJ_G0028544.1 mouse_genomes_project 4 33632343 33718313 - MGP_C57BL6NJ_P0065458 Zfp292 protein_coding protein_coding MGP_C57BL6NJ_T0065792.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172050 43173356 + Ccdc107 protein_coding processed_transcript MGP_C57BL6NJ_T0065793.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172512 43175072 + MGP_C57BL6NJ_P0065793 Ccdc107 protein_coding protein_coding MGP_C57BL6NJ_T0065794.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172527 43172961 + Ccdc107 protein_coding processed_transcript MGP_C57BL6NJ_T0065795.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172539 43175072 + MGP_C57BL6NJ_P0065795 Ccdc107 protein_coding protein_coding MGP_C57BL6NJ_T0065796.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172567 43175015 + Ccdc107 protein_coding processed_transcript MGP_C57BL6NJ_T0065797.1 MGP_C57BL6NJ_G0028625.1 mouse_genomes_project 4 43172567 43175022 + Ccdc107 protein_coding processed_transcript MGP_C57BL6NJ_T0066750.1 MGP_C57BL6NJ_G0028859.1 mouse_genomes_project 4 92174113 92174777 - MGP_C57BL6NJ_P0066750 Ifne protein_coding protein_coding MGP_C57BL6NJ_T0014755.1 MGP_C57BL6NJ_G0012800.1 mouse_genomes_project 4 7995496 7995982 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004766.1 MGP_C57BL6NJ_G0004129.1 mouse_genomes_project 4 163841030 163843901 - BC039966 antisense antisense MGP_C57BL6NJ_T0010881.1 MGP_C57BL6NJ_G0008966.1 mouse_genomes_project 4 144756445 144756521 + Gm23263 miRNA miRNA MGP_C57BL6NJ_T0100351.1 MGP_C57BL6NJ_G0038397.1 mouse_genomes_project 4 49678142 49678246 + Gm26424 snRNA snRNA MGP_C57BL6NJ_T0008051.1 MGP_C57BL6NJ_G0006583.1 mouse_genomes_project 4 84845502 84872348 - Gm11264 lincRNA lincRNA MGP_C57BL6NJ_T0066680.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89706207 89726495 - Plin2 protein_coding processed_transcript MGP_C57BL6NJ_T0066681.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89714368 89739966 - MGP_C57BL6NJ_P0066681 Plin2 protein_coding protein_coding MGP_C57BL6NJ_T0066682.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89724718 89726456 - Plin2 protein_coding processed_transcript MGP_C57BL6NJ_T0066683.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89724967 89726960 - Plin2 protein_coding processed_transcript MGP_C57BL6NJ_T0066684.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89727932 89734408 - MGP_C57BL6NJ_P0066684 Plin2 protein_coding protein_coding MGP_C57BL6NJ_T0066685.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89731688 89739466 - MGP_C57BL6NJ_P0066685 Plin2 protein_coding protein_coding MGP_C57BL6NJ_T0066686.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89731688 89739674 - MGP_C57BL6NJ_P0066686 Plin2 protein_coding protein_coding MGP_C57BL6NJ_T0066687.1 MGP_C57BL6NJ_G0028833.1 mouse_genomes_project 4 89737570 89739892 - Plin2 protein_coding processed_transcript MGP_C57BL6NJ_T0065202.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 10970956 11137072 + MGP_C57BL6NJ_P0065202 Runx1t1 protein_coding protein_coding MGP_C57BL6NJ_T0065203.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 10978817 11084791 + Runx1t1 protein_coding processed_transcript MGP_C57BL6NJ_T0065204.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 10978817 11137051 + MGP_C57BL6NJ_P0065204 Runx1t1 protein_coding protein_coding MGP_C57BL6NJ_T0065205.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 11004737 11133704 + MGP_C57BL6NJ_P0065205 Runx1t1 protein_coding protein_coding MGP_C57BL6NJ_T0065206.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 11018183 11134498 + MGP_C57BL6NJ_P0065206 Runx1t1 protein_coding protein_coding MGP_C57BL6NJ_T0065207.1 MGP_C57BL6NJ_G0028478.1 mouse_genomes_project 4 11132600 11133343 + Runx1t1 protein_coding processed_transcript MGP_C57BL6NJ_T0010883.1 MGP_C57BL6NJ_G0008968.1 mouse_genomes_project 4 145883408 145883492 + Mir6399 miRNA miRNA MGP_C57BL6NJ_T0069878.1 MGP_C57BL6NJ_G0029582.1 mouse_genomes_project 4 159677893 159693568 - MGP_C57BL6NJ_P0069878 Car6 protein_coding protein_coding MGP_C57BL6NJ_T0069879.1 MGP_C57BL6NJ_G0029582.1 mouse_genomes_project 4 159677893 159690734 - MGP_C57BL6NJ_P0069879 Car6 protein_coding protein_coding MGP_C57BL6NJ_T0069880.1 MGP_C57BL6NJ_G0029582.1 mouse_genomes_project 4 159678090 159688387 - Car6 protein_coding processed_transcript MGP_C57BL6NJ_T0069881.1 MGP_C57BL6NJ_G0029582.1 mouse_genomes_project 4 159679117 159690467 - Car6 protein_coding processed_transcript MGP_C57BL6NJ_T0067257.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112658613 112752883 - MGP_C57BL6NJ_P0067257 Scp2 protein_coding protein_coding MGP_C57BL6NJ_T0067258.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112659048 112666037 - Scp2 protein_coding processed_transcript MGP_C57BL6NJ_T0067259.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112659158 112692369 - Scp2 protein_coding processed_transcript MGP_C57BL6NJ_T0067260.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112659330 112692425 - MGP_C57BL6NJ_P0067260 Scp2 protein_coding protein_coding MGP_C57BL6NJ_T0067261.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112661170 112752912 - Scp2 protein_coding processed_transcript MGP_C57BL6NJ_T0067262.1 MGP_C57BL6NJ_G0028970.1 mouse_genomes_project 4 112715953 112781806 - Scp2 protein_coding processed_transcript MGP_C57BL6NJ_T0098872.1 MGP_C57BL6NJ_G0036936.1 mouse_genomes_project 4 92084934 92085169 - pseudogene pseudogene MGP_C57BL6NJ_T0015011.1 MGP_C57BL6NJ_G0013056.1 mouse_genomes_project 4 94628361 94628967 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066942.1 MGP_C57BL6NJ_G0028905.1 mouse_genomes_project 4 103972504 104031833 + MGP_C57BL6NJ_P0066942 Pgm2 protein_coding protein_coding MGP_C57BL6NJ_T0066943.1 MGP_C57BL6NJ_G0028905.1 mouse_genomes_project 4 104000077 104031833 + MGP_C57BL6NJ_P0066943 Pgm2 protein_coding protein_coding MGP_C57BL6NJ_T0069598.1 MGP_C57BL6NJ_G0029508.1 mouse_genomes_project 4 152329571 152330469 + MGP_C57BL6NJ_P0069598 protein_coding protein_coding MGP_C57BL6NJ_T0066962.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105568529 105622706 + MGP_C57BL6NJ_P0066962 Ak4 protein_coding protein_coding MGP_C57BL6NJ_T0066963.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105568541 105622706 + MGP_C57BL6NJ_P0066963 Ak4 protein_coding protein_coding MGP_C57BL6NJ_T0066964.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105568571 105622706 + MGP_C57BL6NJ_P0066964 Ak4 protein_coding protein_coding MGP_C57BL6NJ_T0066965.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105568988 105618479 + MGP_C57BL6NJ_P0066965 Ak4 protein_coding protein_coding MGP_C57BL6NJ_T0066966.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105568988 105616060 + MGP_C57BL6NJ_P0066966 Ak4 protein_coding protein_coding MGP_C57BL6NJ_T0066967.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105569076 105619149 + MGP_C57BL6NJ_P0066967 Ak4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066968.1 MGP_C57BL6NJ_G0028912.1 mouse_genomes_project 4 105569752 105619132 + Ak4 protein_coding processed_transcript MGP_C57BL6NJ_T0069617.1 MGP_C57BL6NJ_G0029522.1 mouse_genomes_project 4 152949028 152959087 - MGP_C57BL6NJ_P0069617 Gm13124 protein_coding protein_coding MGP_C57BL6NJ_T0010856.1 MGP_C57BL6NJ_G0008941.1 mouse_genomes_project 4 124881121 124881187 + Mir1957a miRNA miRNA MGP_C57BL6NJ_T0004712.1 MGP_C57BL6NJ_G0004086.1 mouse_genomes_project 4 141740192 141743556 - antisense antisense MGP_C57BL6NJ_T0014784.1 MGP_C57BL6NJ_G0012829.1 mouse_genomes_project 4 15568066 15569076 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066954.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105275417 105396503 - MGP_C57BL6NJ_P0066954 Jak1 protein_coding protein_coding MGP_C57BL6NJ_T0066955.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105277299 105278170 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0066956.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105303867 105309701 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0066957.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105305295 105309726 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0066958.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105306148 105396502 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0066959.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105306188 105396444 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0066960.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105315901 105396494 - MGP_C57BL6NJ_P0066960 Jak1 protein_coding protein_coding MGP_C57BL6NJ_T0066961.1 MGP_C57BL6NJ_G0028911.1 mouse_genomes_project 4 105322113 105396447 - Jak1 protein_coding processed_transcript MGP_C57BL6NJ_T0015091.1 MGP_C57BL6NJ_G0013136.1 mouse_genomes_project 4 122313606 122314239 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065412.1 MGP_C57BL6NJ_G0028535.1 mouse_genomes_project 4 32702637 32713315 + Cnr1 protein_coding processed_transcript MGP_C57BL6NJ_T0065413.1 MGP_C57BL6NJ_G0028535.1 mouse_genomes_project 4 32702676 32726825 + MGP_C57BL6NJ_P0065413 Cnr1 protein_coding protein_coding MGP_C57BL6NJ_T0065414.1 MGP_C57BL6NJ_G0028535.1 mouse_genomes_project 4 32704246 32726813 + MGP_C57BL6NJ_P0065414 Cnr1 protein_coding protein_coding MGP_C57BL6NJ_T0069819.1 MGP_C57BL6NJ_G0029569.1 mouse_genomes_project 4 158826537 158832653 - MGP_C57BL6NJ_P0069819 Rbp7 protein_coding protein_coding MGP_C57BL6NJ_T0069820.1 MGP_C57BL6NJ_G0029569.1 mouse_genomes_project 4 158826553 158832645 - Rbp7 protein_coding processed_transcript MGP_C57BL6NJ_T0015064.1 MGP_C57BL6NJ_G0013109.1 mouse_genomes_project 4 112961102 112961410 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102251.1 MGP_C57BL6NJ_G0040242.1 mouse_genomes_project 4 43883440 43888914 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102252.1 MGP_C57BL6NJ_G0040242.1 mouse_genomes_project 4 43884785 43888334 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0069432.1 MGP_C57BL6NJ_G0029459.1 mouse_genomes_project 4 149059920 149065317 + MGP_C57BL6NJ_P0069432 Mfap2 protein_coding protein_coding MGP_C57BL6NJ_T0069433.1 MGP_C57BL6NJ_G0029459.1 mouse_genomes_project 4 149060139 149064515 + Mfap2 protein_coding processed_transcript MGP_C57BL6NJ_T0069434.1 MGP_C57BL6NJ_G0029459.1 mouse_genomes_project 4 149060146 149065487 + MGP_C57BL6NJ_P0069434 Mfap2 protein_coding protein_coding MGP_C57BL6NJ_T0066406.1 MGP_C57BL6NJ_G0028775.1 mouse_genomes_project 4 63578434 63597678 + MGP_C57BL6NJ_P0066406 Bspry protein_coding protein_coding MGP_C57BL6NJ_T0066407.1 MGP_C57BL6NJ_G0028775.1 mouse_genomes_project 4 63578434 63597678 + MGP_C57BL6NJ_P0066407 Bspry protein_coding protein_coding MGP_C57BL6NJ_T0066408.1 MGP_C57BL6NJ_G0028775.1 mouse_genomes_project 4 63578470 63586799 + MGP_C57BL6NJ_P0066408 Bspry protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098871.1 MGP_C57BL6NJ_G0036935.1 mouse_genomes_project 4 60492877 60493349 + pseudogene pseudogene MGP_C57BL6NJ_T0015038.1 MGP_C57BL6NJ_G0013083.1 mouse_genomes_project 4 103652656 103653362 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015117.1 MGP_C57BL6NJ_G0013162.1 mouse_genomes_project 4 127152535 127152908 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014860.1 MGP_C57BL6NJ_G0012905.1 mouse_genomes_project 4 37160753 37161182 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014925.1 MGP_C57BL6NJ_G0012970.1 mouse_genomes_project 4 56179174 56179589 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069053.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142737638 142768168 - MGP_C57BL6NJ_P0069053 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069054.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142737638 142753718 - MGP_C57BL6NJ_P0069054 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069055.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142737638 142768137 - MGP_C57BL6NJ_P0069055 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069056.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142737639 142753735 - MGP_C57BL6NJ_P0069056 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069057.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142738289 142753708 - MGP_C57BL6NJ_P0069057 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069058.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142738579 142742751 - Ncmap protein_coding processed_transcript MGP_C57BL6NJ_T0069059.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142738714 142753735 - MGP_C57BL6NJ_P0069059 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0069060.1 MGP_C57BL6NJ_G0029366.1 mouse_genomes_project 4 142739999 142768174 - MGP_C57BL6NJ_P0069060 Ncmap protein_coding protein_coding MGP_C57BL6NJ_T0067939.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125039942 125056501 - MGP_C57BL6NJ_P0067939 Ybx1 protein_coding protein_coding MGP_C57BL6NJ_T0067940.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125039951 125044658 - MGP_C57BL6NJ_P0067940 Ybx1 protein_coding protein_coding MGP_C57BL6NJ_T0067941.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125040128 125041412 - Ybx1 protein_coding processed_transcript MGP_C57BL6NJ_T0067942.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125042997 125044041 - Ybx1 protein_coding processed_transcript MGP_C57BL6NJ_T0067943.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125044138 125056387 - Ybx1 protein_coding processed_transcript MGP_C57BL6NJ_T0067944.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125046867 125056377 - Ybx1 protein_coding processed_transcript MGP_C57BL6NJ_T0067945.1 MGP_C57BL6NJ_G0029119.1 mouse_genomes_project 4 125055480 125056397 - Ybx1 protein_coding processed_transcript MGP_C57BL6NJ_T0065248.1 MGP_C57BL6NJ_G0028495.1 mouse_genomes_project 4 17298767 17399981 - MGP_C57BL6NJ_P0065248 Wwp1 protein_coding protein_coding MGP_C57BL6NJ_T0065249.1 MGP_C57BL6NJ_G0028495.1 mouse_genomes_project 4 17300137 17367853 - MGP_C57BL6NJ_P0065249 Wwp1 protein_coding protein_coding MGP_C57BL6NJ_T0068742.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567094 139590057 + MGP_C57BL6NJ_P0068742 Dnajc8 protein_coding protein_coding MGP_C57BL6NJ_T0068743.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567094 139579793 + MGP_C57BL6NJ_P0068743 Dnajc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068744.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567111 139589976 + Dnajc8 protein_coding retained_intron MGP_C57BL6NJ_T0068745.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567120 139577348 + MGP_C57BL6NJ_P0068745 Dnajc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068746.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567121 139589405 + MGP_C57BL6NJ_P0068746 Dnajc8 protein_coding protein_coding MGP_C57BL6NJ_T0068747.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567125 139589428 + MGP_C57BL6NJ_P0068747 Dnajc8 protein_coding protein_coding MGP_C57BL6NJ_T0068748.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567125 139585293 + MGP_C57BL6NJ_P0068748 Dnajc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068749.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567184 139589347 + MGP_C57BL6NJ_P0068749 Dnajc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068750.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567203 139589773 + MGP_C57BL6NJ_P0068750 Dnajc8 protein_coding protein_coding MGP_C57BL6NJ_T0068751.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139567572 139577765 + Dnajc8 protein_coding retained_intron MGP_C57BL6NJ_T0068752.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139579805 139589402 + MGP_C57BL6NJ_P0068752 Dnajc8 protein_coding protein_coding MGP_C57BL6NJ_T0068753.1 MGP_C57BL6NJ_G0029298.1 mouse_genomes_project 4 139587525 139589758 + Dnajc8 protein_coding retained_intron MGP_C57BL6NJ_T0069457.1 MGP_C57BL6NJ_G0029462.1 mouse_genomes_project 4 149146838 149175316 + MGP_C57BL6NJ_P0069457 Spata21 protein_coding protein_coding MGP_C57BL6NJ_T0069458.1 MGP_C57BL6NJ_G0029462.1 mouse_genomes_project 4 149166542 149174102 + Spata21 protein_coding retained_intron MGP_C57BL6NJ_T0014898.1 MGP_C57BL6NJ_G0012943.1 mouse_genomes_project 4 51581205 51582771 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015158.1 MGP_C57BL6NJ_G0013203.1 mouse_genomes_project 4 142647597 142647907 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004771.1 MGP_C57BL6NJ_G0004133.1 mouse_genomes_project 4 164591142 164598249 + Gm13111 antisense antisense MGP_C57BL6NJ_T0070069.1 MGP_C57BL6NJ_G0029614.1 mouse_genomes_project 4 163237892 163351641 - MGP_C57BL6NJ_P0070069 Ajap1 protein_coding protein_coding MGP_C57BL6NJ_T0070070.1 MGP_C57BL6NJ_G0029614.1 mouse_genomes_project 4 163238902 163351009 - MGP_C57BL6NJ_P0070070 Ajap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010848.1 MGP_C57BL6NJ_G0008933.1 mouse_genomes_project 4 102597558 102597654 + Gm26154 miRNA miRNA MGP_C57BL6NJ_T0069309.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146591774 146622569 - MGP_C57BL6NJ_P0069309 Pla2g5 protein_coding protein_coding MGP_C57BL6NJ_T0069310.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146591774 146622556 - MGP_C57BL6NJ_P0069310 Pla2g5 protein_coding protein_coding MGP_C57BL6NJ_T0069311.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146591779 146680821 - MGP_C57BL6NJ_P0069311 Pla2g5 protein_coding protein_coding MGP_C57BL6NJ_T0069312.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146592877 146615466 - MGP_C57BL6NJ_P0069312 Pla2g5 protein_coding protein_coding MGP_C57BL6NJ_T0069313.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146593089 146615512 - Pla2g5 protein_coding processed_transcript MGP_C57BL6NJ_T0069314.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146597084 146622558 - Pla2g5 protein_coding processed_transcript MGP_C57BL6NJ_T0069315.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146597098 146622529 - Pla2g5 protein_coding processed_transcript MGP_C57BL6NJ_T0069316.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146598704 146607427 - Pla2g5 protein_coding processed_transcript MGP_C57BL6NJ_T0069317.1 MGP_C57BL6NJ_G0029428.1 mouse_genomes_project 4 146676617 146680801 - Pla2g5 protein_coding processed_transcript MGP_C57BL6NJ_T0101662.1 MGP_C57BL6NJ_G0039708.1 mouse_genomes_project 4 54603703 54603834 + Gm24177 snoRNA snoRNA MGP_C57BL6NJ_T0069771.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158099497 158266675 + MGP_C57BL6NJ_P0069771 Casz1 protein_coding protein_coding MGP_C57BL6NJ_T0069772.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158099497 158254836 + MGP_C57BL6NJ_P0069772 Casz1 protein_coding protein_coding MGP_C57BL6NJ_T0069773.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158099533 158137890 + Casz1 protein_coding processed_transcript MGP_C57BL6NJ_T0069774.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158196430 158198986 + Casz1 protein_coding processed_transcript MGP_C57BL6NJ_T0069775.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158208198 158241307 + MGP_C57BL6NJ_P0069775 Casz1 protein_coding protein_coding MGP_C57BL6NJ_T0069776.1 MGP_C57BL6NJ_G0029561.1 mouse_genomes_project 4 158241524 158248922 + MGP_C57BL6NJ_P0069776 Casz1 protein_coding protein_coding MGP_C57BL6NJ_T0011832.1 MGP_C57BL6NJ_G0009917.1 mouse_genomes_project 4 81178555 81178641 + Gm22262 misc_RNA misc_RNA MGP_C57BL6NJ_T0066235.1 MGP_C57BL6NJ_G0028729.1 mouse_genomes_project 4 57478576 57479884 + MGP_C57BL6NJ_P0066235 Gm26657 protein_coding protein_coding MGP_C57BL6NJ_T0067050.1 MGP_C57BL6NJ_G0028929.1 mouse_genomes_project 4 107557364 107619814 - MGP_C57BL6NJ_P0067050 4921539E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0067051.1 MGP_C57BL6NJ_G0028929.1 mouse_genomes_project 4 107557364 107619814 - MGP_C57BL6NJ_P0067051 4921539E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0067052.1 MGP_C57BL6NJ_G0028929.1 mouse_genomes_project 4 107563371 107619814 - MGP_C57BL6NJ_P0067052 4921539E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0014773.1 MGP_C57BL6NJ_G0012818.1 mouse_genomes_project 4 13034843 13035167 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101664.1 MGP_C57BL6NJ_G0039710.1 mouse_genomes_project 4 56129899 56130034 - Gm22150 snoRNA snoRNA MGP_C57BL6NJ_T0014753.1 MGP_C57BL6NJ_G0012798.1 mouse_genomes_project 4 7896557 7900988 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066923.1 MGP_C57BL6NJ_G0028901.1 mouse_genomes_project 4 103700645 103702969 + MGP_C57BL6NJ_P0066923 Foxd3 protein_coding protein_coding MGP_C57BL6NJ_T0070286.1 MGP_C57BL6NJ_G0029653.1 mouse_genomes_project 4 165734009 165771926 + MGP_C57BL6NJ_P0070286 Ssu72 protein_coding protein_coding MGP_C57BL6NJ_T0070287.1 MGP_C57BL6NJ_G0029653.1 mouse_genomes_project 4 165734333 165753150 + Ssu72 protein_coding retained_intron MGP_C57BL6NJ_T0070288.1 MGP_C57BL6NJ_G0029653.1 mouse_genomes_project 4 165734344 165770236 + MGP_C57BL6NJ_P0070288 Ssu72 protein_coding protein_coding MGP_C57BL6NJ_T0014778.1 MGP_C57BL6NJ_G0012823.1 mouse_genomes_project 4 13679754 13682441 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068459.1 MGP_C57BL6NJ_G0029245.1 mouse_genomes_project 4 136207274 136236534 - MGP_C57BL6NJ_P0068459 Zbtb8a protein_coding protein_coding MGP_C57BL6NJ_T0100383.1 MGP_C57BL6NJ_G0038429.1 mouse_genomes_project 4 122527125 122527224 + Gm22335 snRNA snRNA MGP_C57BL6NJ_T0065402.1 MGP_C57BL6NJ_G0028532.1 mouse_genomes_project 4 31923595 31947863 + MGP_C57BL6NJ_P0065402 Srsf12 protein_coding protein_coding MGP_C57BL6NJ_T0065403.1 MGP_C57BL6NJ_G0028532.1 mouse_genomes_project 4 31923910 31947873 + MGP_C57BL6NJ_P0065403 Srsf12 protein_coding protein_coding MGP_C57BL6NJ_T0018518.1 MGP_C57BL6NJ_G0015942.1 mouse_genomes_project 4 65156476 65334516 + 8030451A03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018519.1 MGP_C57BL6NJ_G0015942.1 mouse_genomes_project 4 65156565 65227025 + 8030451A03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018520.1 MGP_C57BL6NJ_G0015942.1 mouse_genomes_project 4 65156582 65159963 + 8030451A03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018521.1 MGP_C57BL6NJ_G0015942.1 mouse_genomes_project 4 65333144 65333537 + 8030451A03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0069221.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145322185 145377334 + Rap1gap protein_coding processed_transcript MGP_C57BL6NJ_T0069222.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145322213 145372606 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0069223.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145341842 145378992 + MGP_C57BL6NJ_P0069223 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069224.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145341842 145390897 + MGP_C57BL6NJ_P0069224 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069225.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145341842 145376554 + MGP_C57BL6NJ_P0069225 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069226.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145342756 145390896 + MGP_C57BL6NJ_P0069226 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069227.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145348495 145376585 + Rap1gap protein_coding processed_transcript MGP_C57BL6NJ_T0069228.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145368298 145390897 + MGP_C57BL6NJ_P0069228 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069229.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145379907 145389394 + MGP_C57BL6NJ_P0069229 Rap1gap protein_coding protein_coding MGP_C57BL6NJ_T0069230.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145385024 145390897 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0069231.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145386364 145388093 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0069232.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145388797 145389972 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0069233.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145389216 145389855 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0069234.1 MGP_C57BL6NJ_G0029410.1 mouse_genomes_project 4 145389246 145390738 + Rap1gap protein_coding retained_intron MGP_C57BL6NJ_T0065662.1 MGP_C57BL6NJ_G0028605.1 mouse_genomes_project 4 42337788 42338663 - MGP_C57BL6NJ_P0065662 protein_coding protein_coding MGP_C57BL6NJ_T0018561.1 MGP_C57BL6NJ_G0015969.1 mouse_genomes_project 4 133647001 133651766 + Gm12940 processed_transcript processed_transcript MGP_C57BL6NJ_T0018562.1 MGP_C57BL6NJ_G0015969.1 mouse_genomes_project 4 133648720 133651766 + Gm12940 processed_transcript processed_transcript MGP_C57BL6NJ_T0018563.1 MGP_C57BL6NJ_G0015969.1 mouse_genomes_project 4 133650433 133665228 + Gm12940 processed_transcript processed_transcript MGP_C57BL6NJ_T0018564.1 MGP_C57BL6NJ_G0015969.1 mouse_genomes_project 4 133650534 133651704 + Gm12940 processed_transcript processed_transcript MGP_C57BL6NJ_T0068138.1 MGP_C57BL6NJ_G0029168.1 mouse_genomes_project 4 130179039 130182106 + MGP_C57BL6NJ_P0068138 4933427I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0007988.1 MGP_C57BL6NJ_G0006527.1 mouse_genomes_project 4 17742932 17753227 - 4930598A11Rik lincRNA lincRNA MGP_C57BL6NJ_T0101677.1 MGP_C57BL6NJ_G0039723.1 mouse_genomes_project 4 76770787 76770925 + Gm26379 snoRNA snoRNA MGP_C57BL6NJ_T0066375.1 MGP_C57BL6NJ_G0028766.1 mouse_genomes_project 4 63209108 63212040 - MGP_C57BL6NJ_P0066375 Mup21 protein_coding protein_coding MGP_C57BL6NJ_T0068133.1 MGP_C57BL6NJ_G0029167.1 mouse_genomes_project 4 130092514 130119711 + Rhbdl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068134.1 MGP_C57BL6NJ_G0029167.1 mouse_genomes_project 4 130092515 130144887 + MGP_C57BL6NJ_P0068134 Rhbdl2 protein_coding protein_coding MGP_C57BL6NJ_T0068135.1 MGP_C57BL6NJ_G0029167.1 mouse_genomes_project 4 130103648 130118354 + Rhbdl2 protein_coding processed_transcript MGP_C57BL6NJ_T0068136.1 MGP_C57BL6NJ_G0029167.1 mouse_genomes_project 4 130118126 130144887 + MGP_C57BL6NJ_P0068136 Rhbdl2 protein_coding protein_coding MGP_C57BL6NJ_T0068137.1 MGP_C57BL6NJ_G0029167.1 mouse_genomes_project 4 130121547 130124512 + Rhbdl2 protein_coding processed_transcript MGP_C57BL6NJ_T0015143.1 MGP_C57BL6NJ_G0013188.1 mouse_genomes_project 4 133951273 133951955 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066477.1 MGP_C57BL6NJ_G0028793.1 mouse_genomes_project 4 64824077 64825098 - Gm11214 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0066478.1 MGP_C57BL6NJ_G0028793.1 mouse_genomes_project 4 64824077 64824629 - MGP_C57BL6NJ_P0066478 Gm11214 protein_coding protein_coding MGP_C57BL6NJ_T0004744.1 MGP_C57BL6NJ_G0004111.1 mouse_genomes_project 4 154803691 154846897 - antisense antisense MGP_C57BL6NJ_T0014822.1 MGP_C57BL6NJ_G0012867.1 mouse_genomes_project 4 26377601 26378624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014865.1 MGP_C57BL6NJ_G0012910.1 mouse_genomes_project 4 39097653 39098572 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067885.1 MGP_C57BL6NJ_G0029099.1 mouse_genomes_project 4 124347616 124348591 - MGP_C57BL6NJ_P0067885 Olfr1342 protein_coding protein_coding MGP_C57BL6NJ_T0066760.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94708955 94831693 - MGP_C57BL6NJ_P0066760 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066761.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94708955 94831658 - MGP_C57BL6NJ_P0066761 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066762.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94708955 94863501 - MGP_C57BL6NJ_P0066762 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066763.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94708955 94831678 - MGP_C57BL6NJ_P0066763 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066764.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94711272 94712775 - Elavl2 protein_coding retained_intron MGP_C57BL6NJ_T0066765.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94711432 94771684 - MGP_C57BL6NJ_P0066765 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066766.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94711432 94771694 - MGP_C57BL6NJ_P0066766 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066767.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94716858 94838888 - Elavl2 protein_coding retained_intron MGP_C57BL6NJ_T0066768.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94722394 94814896 - MGP_C57BL6NJ_P0066768 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066769.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94766973 94832654 - MGP_C57BL6NJ_P0066769 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066770.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94767067 94831580 - MGP_C57BL6NJ_P0066770 Elavl2 protein_coding protein_coding MGP_C57BL6NJ_T0066771.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94843012 94863493 - Elavl2 protein_coding processed_transcript MGP_C57BL6NJ_T0066772.1 MGP_C57BL6NJ_G0028865.1 mouse_genomes_project 4 94863411 94865206 - Elavl2 protein_coding processed_transcript MGP_C57BL6NJ_T0065073.1 MGP_C57BL6NJ_G0028451.1 mouse_genomes_project 4 5002400 5110560 - MGP_C57BL6NJ_P0065073 Car8 protein_coding protein_coding MGP_C57BL6NJ_T0066796.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98641347 98679453 - MGP_C57BL6NJ_P0066796 Mysm1 protein_coding protein_coding MGP_C57BL6NJ_T0066797.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98641370 98653741 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066798.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98646341 98653871 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066799.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98664728 98679428 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066800.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98665955 98679395 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066801.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98665995 98671004 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066802.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98666087 98679431 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066803.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98670631 98679406 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0066804.1 MGP_C57BL6NJ_G0028875.1 mouse_genomes_project 4 98672785 98679428 - Mysm1 protein_coding processed_transcript MGP_C57BL6NJ_T0015107.1 MGP_C57BL6NJ_G0013152.1 mouse_genomes_project 4 125098892 125099949 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070064.1 MGP_C57BL6NJ_G0029613.1 mouse_genomes_project 4 162221423 162319712 + Nphp4 protein_coding processed_transcript MGP_C57BL6NJ_T0070065.1 MGP_C57BL6NJ_G0029613.1 mouse_genomes_project 4 162222619 162319441 + MGP_C57BL6NJ_P0070065 Nphp4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070066.1 MGP_C57BL6NJ_G0029613.1 mouse_genomes_project 4 162222895 162235086 + Nphp4 protein_coding processed_transcript MGP_C57BL6NJ_T0070067.1 MGP_C57BL6NJ_G0029613.1 mouse_genomes_project 4 162232990 162244822 + Nphp4 protein_coding processed_transcript MGP_C57BL6NJ_T0070068.1 MGP_C57BL6NJ_G0029613.1 mouse_genomes_project 4 162249494 162270480 + Nphp4 protein_coding processed_transcript MGP_C57BL6NJ_T0068048.1 MGP_C57BL6NJ_G0029143.1 mouse_genomes_project 4 126947944 126963880 + MGP_C57BL6NJ_P0068048 Col9a2 protein_coding protein_coding MGP_C57BL6NJ_T0068049.1 MGP_C57BL6NJ_G0029143.1 mouse_genomes_project 4 126948307 126952887 + Col9a2 protein_coding retained_intron MGP_C57BL6NJ_T0068050.1 MGP_C57BL6NJ_G0029143.1 mouse_genomes_project 4 126961556 126963377 + Col9a2 protein_coding processed_transcript MGP_C57BL6NJ_T0101667.1 MGP_C57BL6NJ_G0039713.1 mouse_genomes_project 4 57651677 57651810 - Gm25053 snoRNA snoRNA MGP_C57BL6NJ_T0101639.1 MGP_C57BL6NJ_G0039685.1 mouse_genomes_project 4 11338888 11339020 - Gm24068 snoRNA snoRNA MGP_C57BL6NJ_T0014879.1 MGP_C57BL6NJ_G0012924.1 mouse_genomes_project 4 44993566 44993925 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068676.1 MGP_C57BL6NJ_G0029284.1 mouse_genomes_project 4 138853929 138855299 + MGP_C57BL6NJ_P0068676 Tmem200b protein_coding protein_coding MGP_C57BL6NJ_T0066278.1 MGP_C57BL6NJ_G0028739.1 mouse_genomes_project 4 58375332 58739110 + MGP_C57BL6NJ_P0066278 Akap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066280.1 MGP_C57BL6NJ_G0028739.1 mouse_genomes_project 4 58375483 58695201 + MGP_C57BL6NJ_P0066280 Akap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066281.1 MGP_C57BL6NJ_G0028739.1 mouse_genomes_project 4 58453729 58736846 + MGP_C57BL6NJ_P0066281 Akap2 protein_coding protein_coding MGP_C57BL6NJ_T0066288.1 MGP_C57BL6NJ_G0028739.1 mouse_genomes_project 4 58685973 58739112 + MGP_C57BL6NJ_P0066288 Akap2 protein_coding protein_coding MGP_C57BL6NJ_T0008006.1 MGP_C57BL6NJ_G0006545.1 mouse_genomes_project 4 42646780 42648264 + Gm26643 lincRNA lincRNA MGP_C57BL6NJ_T0067393.1 MGP_C57BL6NJ_G0028995.1 mouse_genomes_project 4 114417408 114421601 - MGP_C57BL6NJ_P0067393 Cdkn2c protein_coding protein_coding MGP_C57BL6NJ_T0067394.1 MGP_C57BL6NJ_G0028995.1 mouse_genomes_project 4 114417408 114423418 - MGP_C57BL6NJ_P0067394 Cdkn2c protein_coding protein_coding MGP_C57BL6NJ_T0004673.1 MGP_C57BL6NJ_G0004055.1 mouse_genomes_project 4 122499711 122500558 - 1700021J08Rik antisense antisense MGP_C57BL6NJ_T0069605.1 MGP_C57BL6NJ_G0029512.1 mouse_genomes_project 4 152497989 152502918 - MGP_C57BL6NJ_P0069605 protein_coding protein_coding MGP_C57BL6NJ_T0066624.1 MGP_C57BL6NJ_G0028825.1 mouse_genomes_project 4 86413865 86764313 + MGP_C57BL6NJ_P0066624 Ccdc171 protein_coding protein_coding MGP_C57BL6NJ_T0066625.1 MGP_C57BL6NJ_G0028825.1 mouse_genomes_project 4 86413934 86443468 + MGP_C57BL6NJ_P0066625 Ccdc171 protein_coding protein_coding MGP_C57BL6NJ_T0066626.1 MGP_C57BL6NJ_G0028825.1 mouse_genomes_project 4 86413959 86764228 + MGP_C57BL6NJ_P0066626 Ccdc171 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066627.1 MGP_C57BL6NJ_G0028825.1 mouse_genomes_project 4 86427194 86764090 + MGP_C57BL6NJ_P0066627 Ccdc171 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0066628.1 MGP_C57BL6NJ_G0028825.1 mouse_genomes_project 4 86587557 86696343 + Ccdc171 protein_coding processed_transcript MGP_C57BL6NJ_T0015037.1 MGP_C57BL6NJ_G0013082.1 mouse_genomes_project 4 103530427 103530842 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069657.1 MGP_C57BL6NJ_G0029538.1 mouse_genomes_project 4 157073199 157074579 + MGP_C57BL6NJ_P0069657 Fv1 protein_coding protein_coding MGP_C57BL6NJ_T0067660.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176477 122177680 + MGP_C57BL6NJ_P0067660 Ccdc163 protein_coding protein_coding MGP_C57BL6NJ_T0067661.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176488 122178157 + MGP_C57BL6NJ_P0067661 Ccdc163 protein_coding protein_coding MGP_C57BL6NJ_T0067662.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176494 122177635 + Ccdc163 protein_coding processed_transcript MGP_C57BL6NJ_T0067663.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176503 122178379 + Ccdc163 protein_coding retained_intron MGP_C57BL6NJ_T0067664.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176583 122177383 + MGP_C57BL6NJ_P0067664 Ccdc163 protein_coding protein_coding MGP_C57BL6NJ_T0067665.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176808 122182817 + MGP_C57BL6NJ_P0067665 Ccdc163 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067666.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122176896 122182671 + MGP_C57BL6NJ_P0067666 Ccdc163 protein_coding protein_coding MGP_C57BL6NJ_T0067667.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122180137 122210650 + Ccdc163 protein_coding processed_transcript MGP_C57BL6NJ_T0067668.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122180435 122220024 + Ccdc163 protein_coding processed_transcript MGP_C57BL6NJ_T0067669.1 MGP_C57BL6NJ_G0029056.1 mouse_genomes_project 4 122180502 122182812 + MGP_C57BL6NJ_P0067669 Ccdc163 protein_coding protein_coding MGP_C57BL6NJ_T0065891.1 MGP_C57BL6NJ_G0028647.1 mouse_genomes_project 4 43697926 43726076 + MGP_C57BL6NJ_P0065891 Glipr2 protein_coding protein_coding MGP_C57BL6NJ_T0065892.1 MGP_C57BL6NJ_G0028647.1 mouse_genomes_project 4 43698217 43726076 + MGP_C57BL6NJ_P0065892 Glipr2 protein_coding protein_coding MGP_C57BL6NJ_T0103130.1 MGP_C57BL6NJ_G0040924.1 mouse_genomes_project 4 42444714 42447336 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0070228.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165420415 165428188 + protein_coding retained_intron MGP_C57BL6NJ_T0070229.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165420483 165462164 + protein_coding processed_transcript MGP_C57BL6NJ_T0070230.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165420483 165435741 + MGP_C57BL6NJ_P0070230 protein_coding protein_coding MGP_C57BL6NJ_T0070231.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165420516 165487824 + MGP_C57BL6NJ_P0070231 protein_coding protein_coding MGP_C57BL6NJ_T0070232.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165435668 165467898 + protein_coding retained_intron MGP_C57BL6NJ_T0070233.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165443613 165467731 + protein_coding processed_transcript MGP_C57BL6NJ_T0070234.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165473032 165487824 + protein_coding retained_intron MGP_C57BL6NJ_T0070235.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165483308 165487949 + protein_coding retained_intron MGP_C57BL6NJ_T0070236.1 MGP_C57BL6NJ_G0029643.1 mouse_genomes_project 4 165483355 165487899 + protein_coding retained_intron MGP_C57BL6NJ_T0001564.1 MGP_C57BL6NJ_G0001463.1 mouse_genomes_project 4 153308813 153310507 - TEC TEC MGP_C57BL6NJ_T0065058.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3139651 3202446 - Nsmaf protein_coding retained_intron MGP_C57BL6NJ_T0065059.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3139651 3202446 - MGP_C57BL6NJ_P0065059 Nsmaf protein_coding protein_coding MGP_C57BL6NJ_T0065060.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3139855 3142451 - Nsmaf protein_coding retained_intron MGP_C57BL6NJ_T0065061.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3140213 3202271 - Nsmaf protein_coding processed_transcript MGP_C57BL6NJ_T0065062.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3150035 3202430 - Nsmaf protein_coding processed_transcript MGP_C57BL6NJ_T0065063.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3152654 3168648 - Nsmaf protein_coding retained_intron MGP_C57BL6NJ_T0065064.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3169229 3177782 - Nsmaf protein_coding retained_intron MGP_C57BL6NJ_T0065065.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3173107 3201754 - Nsmaf protein_coding processed_transcript MGP_C57BL6NJ_T0065066.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3174386 3193193 - Nsmaf protein_coding processed_transcript MGP_C57BL6NJ_T0065067.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3178355 3202272 - MGP_C57BL6NJ_P0065067 Nsmaf protein_coding protein_coding MGP_C57BL6NJ_T0065068.1 MGP_C57BL6NJ_G0028449.1 mouse_genomes_project 4 3182996 3191259 - Nsmaf protein_coding processed_transcript MGP_C57BL6NJ_T0004651.1 MGP_C57BL6NJ_G0004039.1 mouse_genomes_project 4 107298201 107306695 - BB031773 antisense antisense MGP_C57BL6NJ_T0066151.1 MGP_C57BL6NJ_G0028702.1 mouse_genomes_project 4 49722134 49731865 - MGP_C57BL6NJ_P0066151 Mrpl50 protein_coding protein_coding MGP_C57BL6NJ_T0008075.1 MGP_C57BL6NJ_G0006602.1 mouse_genomes_project 4 103135039 103149713 - Gm12681 lincRNA lincRNA MGP_C57BL6NJ_T0007967.1 MGP_C57BL6NJ_G0006512.1 mouse_genomes_project 4 2323875 2334888 + 4930423M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007968.1 MGP_C57BL6NJ_G0006512.1 mouse_genomes_project 4 2323883 2334361 + 4930423M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0070160.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164896442 164902435 - MGP_C57BL6NJ_P0070160 Tnfrsf14 protein_coding protein_coding MGP_C57BL6NJ_T0070161.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164896442 164902310 - MGP_C57BL6NJ_P0070161 Tnfrsf14 protein_coding protein_coding MGP_C57BL6NJ_T0070162.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164896476 164902279 - MGP_C57BL6NJ_P0070162 Tnfrsf14 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070163.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164896493 164902785 - MGP_C57BL6NJ_P0070163 Tnfrsf14 protein_coding protein_coding MGP_C57BL6NJ_T0070164.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164898706 164902785 - Tnfrsf14 protein_coding processed_transcript MGP_C57BL6NJ_T0070165.1 MGP_C57BL6NJ_G0029632.1 mouse_genomes_project 4 164900860 164902796 - Tnfrsf14 protein_coding processed_transcript MGP_C57BL6NJ_T0007986.1 MGP_C57BL6NJ_G0006526.1 mouse_genomes_project 4 17407689 17411157 - Gm12354 lincRNA lincRNA MGP_C57BL6NJ_T0007987.1 MGP_C57BL6NJ_G0006526.1 mouse_genomes_project 4 17407689 17410844 - Gm12354 lincRNA lincRNA MGP_C57BL6NJ_T0068967.1 MGP_C57BL6NJ_G0029347.1 mouse_genomes_project 4 141595398 141611656 + MGP_C57BL6NJ_P0068967 Trim63 protein_coding protein_coding MGP_C57BL6NJ_T0068968.1 MGP_C57BL6NJ_G0029347.1 mouse_genomes_project 4 141595400 141611636 + MGP_C57BL6NJ_P0068968 Trim63 protein_coding protein_coding MGP_C57BL6NJ_T0068969.1 MGP_C57BL6NJ_G0029347.1 mouse_genomes_project 4 141595490 141597646 + Trim63 protein_coding retained_intron MGP_C57BL6NJ_T0068970.1 MGP_C57BL6NJ_G0029347.1 mouse_genomes_project 4 141600266 141611655 + Trim63 protein_coding processed_transcript MGP_C57BL6NJ_T0067730.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122675447 122679890 - MGP_C57BL6NJ_P0067730 Rps8 protein_coding protein_coding MGP_C57BL6NJ_T0067731.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122675454 122678144 - Rps8 protein_coding retained_intron MGP_C57BL6NJ_T0067732.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122675992 122678828 - Rps8 protein_coding retained_intron MGP_C57BL6NJ_T0067733.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122676011 122679731 - Rps8 protein_coding retained_intron MGP_C57BL6NJ_T0067734.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122678156 122679716 - Rps8 protein_coding retained_intron MGP_C57BL6NJ_T0067735.1 MGP_C57BL6NJ_G0029069.1 mouse_genomes_project 4 122678332 122679719 - Rps8 protein_coding retained_intron MGP_C57BL6NJ_T0008037.1 MGP_C57BL6NJ_G0006569.1 mouse_genomes_project 4 59536543 59546695 - Gm12580 lincRNA lincRNA MGP_C57BL6NJ_T0069072.1 MGP_C57BL6NJ_G0029369.1 mouse_genomes_project 4 142859407 142886475 + Stpg1 protein_coding processed_transcript MGP_C57BL6NJ_T0069073.1 MGP_C57BL6NJ_G0029369.1 mouse_genomes_project 4 142860594 142903694 + Stpg1 protein_coding processed_transcript MGP_C57BL6NJ_T0069074.1 MGP_C57BL6NJ_G0029369.1 mouse_genomes_project 4 142860604 142907507 + MGP_C57BL6NJ_P0069074 Stpg1 protein_coding protein_coding MGP_C57BL6NJ_T0014905.1 MGP_C57BL6NJ_G0012950.1 mouse_genomes_project 4 52661769 52662519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068233.1 MGP_C57BL6NJ_G0029196.1 mouse_genomes_project 4 132686442 132688573 + MGP_C57BL6NJ_P0068233 Eva1b protein_coding protein_coding MGP_C57BL6NJ_T0068234.1 MGP_C57BL6NJ_G0029196.1 mouse_genomes_project 4 132686701 132688574 + MGP_C57BL6NJ_P0068234 Eva1b protein_coding protein_coding MGP_C57BL6NJ_T0068235.1 MGP_C57BL6NJ_G0029196.1 mouse_genomes_project 4 132687230 132688564 + MGP_C57BL6NJ_P0068235 Eva1b protein_coding protein_coding MGP_C57BL6NJ_T0015186.1 MGP_C57BL6NJ_G0013231.1 mouse_genomes_project 4 152555554 152555980 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015129.1 MGP_C57BL6NJ_G0013174.1 mouse_genomes_project 4 129914858 129915267 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015208.1 MGP_C57BL6NJ_G0013253.1 mouse_genomes_project 4 156567338 156567717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015000.1 MGP_C57BL6NJ_G0013045.1 mouse_genomes_project 4 90766895 90769344 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068580.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982514 137038656 + MGP_C57BL6NJ_P0068580 Col16a1 protein_coding protein_coding MGP_C57BL6NJ_T0068581.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982549 136984406 + MGP_C57BL6NJ_P0068581 Col16a1 protein_coding protein_coding MGP_C57BL6NJ_T0068582.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982559 137032311 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068583.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982583 137017264 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068584.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982619 136986522 + MGP_C57BL6NJ_P0068584 Col16a1 protein_coding protein_coding MGP_C57BL6NJ_T0068585.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136982636 137038662 + MGP_C57BL6NJ_P0068585 Col16a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068586.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136989658 136993230 + MGP_C57BL6NJ_P0068586 Col16a1 protein_coding protein_coding MGP_C57BL6NJ_T0068587.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136989703 136990676 + Col16a1 protein_coding retained_intron MGP_C57BL6NJ_T0068588.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 136990638 137038656 + MGP_C57BL6NJ_P0068588 Col16a1 protein_coding protein_coding MGP_C57BL6NJ_T0068589.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 137004439 137018368 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068590.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 137012752 137017071 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068591.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 137014719 137017483 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0068592.1 MGP_C57BL6NJ_G0029266.1 mouse_genomes_project 4 137036982 137038655 + Col16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066806.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99281549 99671855 + MGP_C57BL6NJ_P0066806 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066807.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99281553 99581196 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066808.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99281561 99671851 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066809.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99281562 99323875 + MGP_C57BL6NJ_P0066809 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066810.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99303414 99559017 + MGP_C57BL6NJ_P0066810 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066811.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99303477 99327282 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066812.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99303482 99323881 + MGP_C57BL6NJ_P0066812 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066813.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99303487 99503513 + MGP_C57BL6NJ_P0066813 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066814.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99309237 99671720 + MGP_C57BL6NJ_P0066814 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066815.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99309237 99549557 + MGP_C57BL6NJ_P0066815 Fggy protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066816.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99310908 99470243 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066817.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99350972 99621198 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066818.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99350979 99470300 + MGP_C57BL6NJ_P0066818 Fggy protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066819.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99364310 99559430 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066820.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99469785 99503522 + Fggy protein_coding processed_transcript MGP_C57BL6NJ_T0066821.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99503585 99671855 + MGP_C57BL6NJ_P0066821 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066822.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99559425 99671720 + MGP_C57BL6NJ_P0066822 Fggy protein_coding protein_coding MGP_C57BL6NJ_T0066823.1 MGP_C57BL6NJ_G0028877.1 mouse_genomes_project 4 99590166 99671850 + MGP_C57BL6NJ_P0066823 Fggy protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014834.1 MGP_C57BL6NJ_G0012879.1 mouse_genomes_project 4 29961972 29962447 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066060.1 MGP_C57BL6NJ_G0028678.1 mouse_genomes_project 4 46420387 46444345 + MGP_C57BL6NJ_P0066060 Anp32b protein_coding protein_coding MGP_C57BL6NJ_T0066055.1 MGP_C57BL6NJ_G0028676.1 mouse_genomes_project 4 46328636 46342141 - MGP_C57BL6NJ_P0066055 Trmo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066056.1 MGP_C57BL6NJ_G0028676.1 mouse_genomes_project 4 46329110 46342146 - MGP_C57BL6NJ_P0066056 Trmo protein_coding protein_coding MGP_C57BL6NJ_T0066057.1 MGP_C57BL6NJ_G0028676.1 mouse_genomes_project 4 46331992 46342160 - MGP_C57BL6NJ_P0066057 Trmo protein_coding protein_coding MGP_C57BL6NJ_T0068325.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133634594 133644507 + MGP_C57BL6NJ_P0068325 Sfpq protein_coding protein_coding MGP_C57BL6NJ_T0068326.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133636653 133640587 + Sfpq protein_coding processed_transcript MGP_C57BL6NJ_T0068327.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133636797 133651766 + Sfpq protein_coding processed_transcript MGP_C57BL6NJ_T0068328.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133639194 133639885 + Sfpq protein_coding processed_transcript MGP_C57BL6NJ_T0068329.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133639226 133641286 + Sfpq protein_coding processed_transcript MGP_C57BL6NJ_T0068330.1 MGP_C57BL6NJ_G0029214.1 mouse_genomes_project 4 133639715 133640820 + Sfpq protein_coding processed_transcript MGP_C57BL6NJ_T0069199.1 MGP_C57BL6NJ_G0029406.1 mouse_genomes_project 4 145089571 145091723 + MGP_C57BL6NJ_P0069199 1700013G24Rik protein_coding protein_coding MGP_C57BL6NJ_T0069619.1 MGP_C57BL6NJ_G0029524.1 mouse_genomes_project 4 153047385 153063637 - MGP_C57BL6NJ_P0069619 Gm436 protein_coding protein_coding MGP_C57BL6NJ_T0068354.1 MGP_C57BL6NJ_G0029222.1 mouse_genomes_project 4 134014456 134017452 - MGP_C57BL6NJ_P0068354 Gjb4 protein_coding protein_coding MGP_C57BL6NJ_T0068355.1 MGP_C57BL6NJ_G0029222.1 mouse_genomes_project 4 134014456 134017452 - MGP_C57BL6NJ_P0068355 Gjb4 protein_coding protein_coding MGP_C57BL6NJ_T0007990.1 MGP_C57BL6NJ_G0006529.1 mouse_genomes_project 4 20782756 20793570 - 1700025O08Rik lincRNA lincRNA MGP_C57BL6NJ_T0008038.1 MGP_C57BL6NJ_G0006570.1 mouse_genomes_project 4 60192233 60196345 + Gm12596 lincRNA lincRNA MGP_C57BL6NJ_T0065251.1 MGP_C57BL6NJ_G0028497.1 mouse_genomes_project 4 17570496 17619721 - MGP_C57BL6NJ_P0065251 Atp6v0d2 protein_coding protein_coding MGP_C57BL6NJ_T0065252.1 MGP_C57BL6NJ_G0028497.1 mouse_genomes_project 4 17584487 17614056 - MGP_C57BL6NJ_P0065252 Atp6v0d2 protein_coding protein_coding MGP_C57BL6NJ_T0014809.1 MGP_C57BL6NJ_G0012854.1 mouse_genomes_project 4 23441710 23442538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008055.1 MGP_C57BL6NJ_G0006585.1 mouse_genomes_project 4 86248163 86257863 + Gm11184 lincRNA lincRNA MGP_C57BL6NJ_T0069198.1 MGP_C57BL6NJ_G0029405.1 mouse_genomes_project 4 144999783 145008575 - MGP_C57BL6NJ_P0069198 protein_coding protein_coding MGP_C57BL6NJ_T0008145.1 MGP_C57BL6NJ_G0006651.1 mouse_genomes_project 4 136883849 136886996 + 1700003M07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008146.1 MGP_C57BL6NJ_G0006651.1 mouse_genomes_project 4 136884283 136887133 + 1700003M07Rik lincRNA lincRNA MGP_C57BL6NJ_T0065997.1 MGP_C57BL6NJ_G0028663.1 mouse_genomes_project 4 45211731 45253758 + MGP_C57BL6NJ_P0065997 Dcaf10 protein_coding protein_coding MGP_C57BL6NJ_T0065998.1 MGP_C57BL6NJ_G0028663.1 mouse_genomes_project 4 45211750 45243451 + Dcaf10 protein_coding processed_transcript MGP_C57BL6NJ_T0065999.1 MGP_C57BL6NJ_G0028663.1 mouse_genomes_project 4 45211812 45248955 + Dcaf10 protein_coding processed_transcript MGP_C57BL6NJ_T0066000.1 MGP_C57BL6NJ_G0028663.1 mouse_genomes_project 4 45243317 45249666 + MGP_C57BL6NJ_P0066000 Dcaf10 protein_coding protein_coding MGP_C57BL6NJ_T0015010.1 MGP_C57BL6NJ_G0013055.1 mouse_genomes_project 4 94308201 94308696 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067704.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122519309 122593872 + MGP_C57BL6NJ_P0067704 Eif2b3 protein_coding protein_coding MGP_C57BL6NJ_T0067705.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122519322 122579397 + MGP_C57BL6NJ_P0067705 Eif2b3 protein_coding protein_coding MGP_C57BL6NJ_T0067706.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122547785 122565468 + Eif2b3 protein_coding processed_transcript MGP_C57BL6NJ_T0067707.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122572608 122580437 + Eif2b3 protein_coding processed_transcript MGP_C57BL6NJ_T0067708.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122573600 122594323 + Eif2b3 protein_coding processed_transcript MGP_C57BL6NJ_T0067709.1 MGP_C57BL6NJ_G0029064.1 mouse_genomes_project 4 122587417 122593865 + Eif2b3 protein_coding processed_transcript MGP_C57BL6NJ_T0004632.1 MGP_C57BL6NJ_G0004030.1 mouse_genomes_project 4 92015329 92021559 - Gm13274 antisense antisense MGP_C57BL6NJ_T0004633.1 MGP_C57BL6NJ_G0004030.1 mouse_genomes_project 4 92015422 92021558 - Gm13274 antisense antisense MGP_C57BL6NJ_T0010828.1 MGP_C57BL6NJ_G0008913.1 mouse_genomes_project 4 40341026 40341090 + Mir3094 miRNA miRNA MGP_C57BL6NJ_T0070157.1 MGP_C57BL6NJ_G0029631.1 mouse_genomes_project 4 164868520 164872055 - Fam213b protein_coding processed_transcript MGP_C57BL6NJ_T0070158.1 MGP_C57BL6NJ_G0029631.1 mouse_genomes_project 4 164869415 164872127 - MGP_C57BL6NJ_P0070158 Fam213b protein_coding protein_coding MGP_C57BL6NJ_T0070159.1 MGP_C57BL6NJ_G0029631.1 mouse_genomes_project 4 164870351 164872152 - MGP_C57BL6NJ_P0070159 Fam213b protein_coding protein_coding MGP_C57BL6NJ_T0068371.1 MGP_C57BL6NJ_G0029228.1 mouse_genomes_project 4 135378837 135382014 - MGP_C57BL6NJ_P0068371 Tlr12 protein_coding protein_coding MGP_C57BL6NJ_T0068372.1 MGP_C57BL6NJ_G0029228.1 mouse_genomes_project 4 135380896 135381987 - Tlr12 protein_coding processed_transcript MGP_C57BL6NJ_T0004619.1 MGP_C57BL6NJ_G0004017.1 mouse_genomes_project 4 57949651 57954135 + Gm12530 antisense antisense MGP_C57BL6NJ_T0070111.1 MGP_C57BL6NJ_G0029622.1 mouse_genomes_project 4 164057136 164072718 + MGP_C57BL6NJ_P0070111 Wrap73 protein_coding protein_coding MGP_C57BL6NJ_T0070112.1 MGP_C57BL6NJ_G0029622.1 mouse_genomes_project 4 164057173 164072718 + Wrap73 protein_coding processed_transcript MGP_C57BL6NJ_T0070113.1 MGP_C57BL6NJ_G0029622.1 mouse_genomes_project 4 164067798 164071182 + MGP_C57BL6NJ_P0070113 Wrap73 protein_coding protein_coding MGP_C57BL6NJ_T0070114.1 MGP_C57BL6NJ_G0029622.1 mouse_genomes_project 4 164071116 164084587 + Wrap73 protein_coding processed_transcript MGP_C57BL6NJ_T0004696.1 MGP_C57BL6NJ_G0004074.1 mouse_genomes_project 4 132684673 132686434 + Gm12946 antisense antisense MGP_C57BL6NJ_T0068778.1 MGP_C57BL6NJ_G0029305.1 mouse_genomes_project 4 139891310 139907594 - MGP_C57BL6NJ_P0068778 Ppp1r8 protein_coding protein_coding MGP_C57BL6NJ_T0068779.1 MGP_C57BL6NJ_G0029305.1 mouse_genomes_project 4 139892208 139907548 - MGP_C57BL6NJ_P0068779 Ppp1r8 protein_coding protein_coding MGP_C57BL6NJ_T0068780.1 MGP_C57BL6NJ_G0029305.1 mouse_genomes_project 4 139893349 139897398 - Ppp1r8 protein_coding processed_transcript MGP_C57BL6NJ_T0068781.1 MGP_C57BL6NJ_G0029305.1 mouse_genomes_project 4 139894771 139907549 - Ppp1r8 protein_coding processed_transcript MGP_C57BL6NJ_T0068782.1 MGP_C57BL6NJ_G0029305.1 mouse_genomes_project 4 139899120 139907559 - Ppp1r8 protein_coding processed_transcript MGP_C57BL6NJ_T0068846.1 MGP_C57BL6NJ_G0029321.1 mouse_genomes_project 4 140668714 140682165 - MGP_C57BL6NJ_P0068846 Nudc protein_coding protein_coding MGP_C57BL6NJ_T0068847.1 MGP_C57BL6NJ_G0029321.1 mouse_genomes_project 4 140669314 140669610 - Nudc protein_coding processed_transcript MGP_C57BL6NJ_T0068848.1 MGP_C57BL6NJ_G0029321.1 mouse_genomes_project 4 140670400 140672096 - Nudc protein_coding processed_transcript MGP_C57BL6NJ_T0015167.1 MGP_C57BL6NJ_G0013212.1 mouse_genomes_project 4 143793665 143794188 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070133.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0070134.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070134 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070135.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070135 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070136.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070136 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070137.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070137 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070138.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070138 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070139.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164248142 164590423 - MGP_C57BL6NJ_P0070139 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070140.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164255349 164266864 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0070141.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164260271 164266934 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0070143.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164278136 164280455 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0070144.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164287273 164590430 - MGP_C57BL6NJ_P0070144 Prdm16 protein_coding protein_coding MGP_C57BL6NJ_T0070145.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164417325 164473693 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0070146.1 MGP_C57BL6NJ_G0029626.1 mouse_genomes_project 4 164417356 164590354 - Prdm16 protein_coding processed_transcript MGP_C57BL6NJ_T0068288.1 MGP_C57BL6NJ_G0029206.1 mouse_genomes_project 4 133062830 133110486 - MGP_C57BL6NJ_P0068288 Ago4 protein_coding protein_coding MGP_C57BL6NJ_T0068289.1 MGP_C57BL6NJ_G0029206.1 mouse_genomes_project 4 133092747 133094183 - Ago4 protein_coding processed_transcript MGP_C57BL6NJ_T0066098.1 MGP_C57BL6NJ_G0028687.1 mouse_genomes_project 4 47411723 47473392 + MGP_C57BL6NJ_P0066098 Tgfbr1 protein_coding protein_coding MGP_C57BL6NJ_T0066099.1 MGP_C57BL6NJ_G0028687.1 mouse_genomes_project 4 47411728 47476189 + MGP_C57BL6NJ_P0066099 Tgfbr1 protein_coding protein_coding MGP_C57BL6NJ_T0066100.1 MGP_C57BL6NJ_G0028687.1 mouse_genomes_project 4 47447386 47472294 + MGP_C57BL6NJ_P0066100 Tgfbr1 protein_coding protein_coding MGP_C57BL6NJ_T0067897.1 MGP_C57BL6NJ_G0029109.1 mouse_genomes_project 4 124666917 124667703 - MGP_C57BL6NJ_P0067897 Olfr1328 protein_coding protein_coding MGP_C57BL6NJ_T0098874.1 MGP_C57BL6NJ_G0036938.1 mouse_genomes_project 4 130223768 130225228 - pseudogene pseudogene MGP_C57BL6NJ_T0068460.1 MGP_C57BL6NJ_G0029246.1 mouse_genomes_project 4 136290456 136305447 - MGP_C57BL6NJ_P0068460 Zbtb8b protein_coding protein_coding MGP_C57BL6NJ_T0068461.1 MGP_C57BL6NJ_G0029246.1 mouse_genomes_project 4 136290456 136305412 - MGP_C57BL6NJ_P0068461 Zbtb8b protein_coding protein_coding MGP_C57BL6NJ_T0068462.1 MGP_C57BL6NJ_G0029246.1 mouse_genomes_project 4 136290960 136297221 - Zbtb8b protein_coding processed_transcript MGP_C57BL6NJ_T0068463.1 MGP_C57BL6NJ_G0029246.1 mouse_genomes_project 4 136293836 136305414 - Zbtb8b protein_coding retained_intron MGP_C57BL6NJ_T0100345.1 MGP_C57BL6NJ_G0038391.1 mouse_genomes_project 4 40703167 40703275 - Gm26049 snRNA snRNA MGP_C57BL6NJ_T0015152.1 MGP_C57BL6NJ_G0013197.1 mouse_genomes_project 4 139949213 139951077 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065644.1 MGP_C57BL6NJ_G0028596.1 mouse_genomes_project 4 41866522 41868221 + MGP_C57BL6NJ_P0065644 protein_coding protein_coding MGP_C57BL6NJ_T0068476.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136386964 136418540 - MGP_C57BL6NJ_P0068476 Hdac1 protein_coding protein_coding MGP_C57BL6NJ_T0068477.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136387128 136388379 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0068478.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136388943 136393779 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0068479.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136393479 136401526 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0068480.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136393626 136397111 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0068481.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136393814 136397069 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0068482.1 MGP_C57BL6NJ_G0029251.1 mouse_genomes_project 4 136401041 136418518 - Hdac1 protein_coding retained_intron MGP_C57BL6NJ_T0014990.1 MGP_C57BL6NJ_G0013035.1 mouse_genomes_project 4 86383261 86383524 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007975.1 MGP_C57BL6NJ_G0006516.1 mouse_genomes_project 4 8181917 8186111 + Gm11827 lincRNA lincRNA MGP_C57BL6NJ_T0007976.1 MGP_C57BL6NJ_G0006516.1 mouse_genomes_project 4 8183070 8186111 + Gm11827 lincRNA lincRNA MGP_C57BL6NJ_T0014801.1 MGP_C57BL6NJ_G0012846.1 mouse_genomes_project 4 20365056 20365628 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004656.1 MGP_C57BL6NJ_G0004044.1 mouse_genomes_project 4 111915776 111920798 - antisense antisense MGP_C57BL6NJ_T0065337.1 MGP_C57BL6NJ_G0028517.1 mouse_genomes_project 4 24476741 24501364 - MGP_C57BL6NJ_P0065337 Manea protein_coding protein_coding MGP_C57BL6NJ_T0065338.1 MGP_C57BL6NJ_G0028517.1 mouse_genomes_project 4 24480280 24494511 - Manea protein_coding processed_transcript MGP_C57BL6NJ_T0065339.1 MGP_C57BL6NJ_G0028517.1 mouse_genomes_project 4 24494075 24501327 - Manea protein_coding processed_transcript MGP_C57BL6NJ_T0065340.1 MGP_C57BL6NJ_G0028517.1 mouse_genomes_project 4 24494366 24501364 - MGP_C57BL6NJ_P0065340 Manea protein_coding protein_coding MGP_C57BL6NJ_T0100392.1 MGP_C57BL6NJ_G0038438.1 mouse_genomes_project 4 132743012 132743158 - Gm25323 snRNA snRNA MGP_C57BL6NJ_T0008138.1 MGP_C57BL6NJ_G0006648.1 mouse_genomes_project 4 136100152 136106319 + lincRNA lincRNA MGP_C57BL6NJ_T0008139.1 MGP_C57BL6NJ_G0006648.1 mouse_genomes_project 4 136105054 136106319 + lincRNA lincRNA MGP_C57BL6NJ_T0066847.1 MGP_C57BL6NJ_G0028886.1 mouse_genomes_project 4 100418262 100457277 - MGP_C57BL6NJ_P0066847 Cyp2j5 protein_coding protein_coding MGP_C57BL6NJ_T0100409.1 MGP_C57BL6NJ_G0038455.1 mouse_genomes_project 4 153142538 153142704 - Gm25938 snRNA snRNA MGP_C57BL6NJ_T0015018.1 MGP_C57BL6NJ_G0013063.1 mouse_genomes_project 4 96859205 96860081 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015102.1 MGP_C57BL6NJ_G0013147.1 mouse_genomes_project 4 124061956 124062164 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069097.1 MGP_C57BL6NJ_G0029378.1 mouse_genomes_project 4 143348164 143366193 + MGP_C57BL6NJ_P0069097 Hmgcl protein_coding protein_coding MGP_C57BL6NJ_T0069098.1 MGP_C57BL6NJ_G0029378.1 mouse_genomes_project 4 143348181 143364484 + Hmgcl protein_coding processed_transcript MGP_C57BL6NJ_T0069099.1 MGP_C57BL6NJ_G0029378.1 mouse_genomes_project 4 143350216 143362325 + Hmgcl protein_coding processed_transcript MGP_C57BL6NJ_T0069100.1 MGP_C57BL6NJ_G0029378.1 mouse_genomes_project 4 143363302 143366193 + Hmgcl protein_coding processed_transcript MGP_C57BL6NJ_T0069101.1 MGP_C57BL6NJ_G0029378.1 mouse_genomes_project 4 143363907 143365792 + Hmgcl protein_coding processed_transcript MGP_C57BL6NJ_T0066985.1 MGP_C57BL6NJ_G0028918.1 mouse_genomes_project 4 106092091 106095164 + MGP_C57BL6NJ_P0066985 protein_coding protein_coding MGP_C57BL6NJ_T0014988.1 MGP_C57BL6NJ_G0013033.1 mouse_genomes_project 4 85480615 85480882 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014987.1 MGP_C57BL6NJ_G0013032.1 mouse_genomes_project 4 84470784 84475241 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067366.1 MGP_C57BL6NJ_G0028990.1 mouse_genomes_project 4 113941863 113977729 + MGP_C57BL6NJ_P0067366 Calr4 protein_coding protein_coding MGP_C57BL6NJ_T0067367.1 MGP_C57BL6NJ_G0028990.1 mouse_genomes_project 4 113959266 113977979 + MGP_C57BL6NJ_P0067367 Calr4 protein_coding protein_coding MGP_C57BL6NJ_T0067368.1 MGP_C57BL6NJ_G0028990.1 mouse_genomes_project 4 113968216 113977551 + Calr4 protein_coding processed_transcript MGP_C57BL6NJ_T0068939.1 MGP_C57BL6NJ_G0029340.1 mouse_genomes_project 4 141481748 141497944 - MGP_C57BL6NJ_P0068939 Catsper4 protein_coding protein_coding MGP_C57BL6NJ_T0068940.1 MGP_C57BL6NJ_G0029340.1 mouse_genomes_project 4 141481748 141497944 - MGP_C57BL6NJ_P0068940 Catsper4 protein_coding protein_coding MGP_C57BL6NJ_T0068941.1 MGP_C57BL6NJ_G0029340.1 mouse_genomes_project 4 141496250 141497933 - MGP_C57BL6NJ_P0068941 Catsper4 protein_coding protein_coding MGP_C57BL6NJ_T0068942.1 MGP_C57BL6NJ_G0029340.1 mouse_genomes_project 4 141497058 141497911 - Catsper4 protein_coding processed_transcript MGP_C57BL6NJ_T0066787.1 MGP_C57BL6NJ_G0028872.1 mouse_genomes_project 4 98310237 98323726 - MGP_C57BL6NJ_P0066787 Lrrc19 protein_coding protein_coding MGP_C57BL6NJ_T0066788.1 MGP_C57BL6NJ_G0028872.1 mouse_genomes_project 4 98310237 98323754 - MGP_C57BL6NJ_P0066788 Lrrc19 protein_coding protein_coding MGP_C57BL6NJ_T0011828.1 MGP_C57BL6NJ_G0009913.1 mouse_genomes_project 4 54281604 54281903 - Gm25445 misc_RNA misc_RNA MGP_C57BL6NJ_T0014947.1 MGP_C57BL6NJ_G0012992.1 mouse_genomes_project 4 69771247 69773292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014971.1 MGP_C57BL6NJ_G0013016.1 mouse_genomes_project 4 78121890 78122719 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069077.1 MGP_C57BL6NJ_G0029371.1 mouse_genomes_project 4 143069943 143091697 + MGP_C57BL6NJ_P0069077 Ifnlr1 protein_coding protein_coding MGP_C57BL6NJ_T0101713.1 MGP_C57BL6NJ_G0039759.1 mouse_genomes_project 4 139305105 139305235 + Snora61 snoRNA snoRNA MGP_C57BL6NJ_T0066054.1 MGP_C57BL6NJ_G0028675.1 mouse_genomes_project 4 46290928 46293732 + MGP_C57BL6NJ_P0066054 Foxe1 protein_coding protein_coding MGP_C57BL6NJ_T0100365.1 MGP_C57BL6NJ_G0038411.1 mouse_genomes_project 4 99248270 99248431 + Gm25004 snRNA snRNA MGP_C57BL6NJ_T0004772.1 MGP_C57BL6NJ_G0004134.1 mouse_genomes_project 4 164829336 164834318 - Gm13112 antisense antisense MGP_C57BL6NJ_T0004773.1 MGP_C57BL6NJ_G0004134.1 mouse_genomes_project 4 164829881 164836834 - Gm13112 antisense antisense MGP_C57BL6NJ_T0004686.1 MGP_C57BL6NJ_G0004067.1 mouse_genomes_project 4 129953262 129956109 + Gm12925 antisense antisense MGP_C57BL6NJ_T0004687.1 MGP_C57BL6NJ_G0004067.1 mouse_genomes_project 4 129954835 129958592 + Gm12925 antisense antisense MGP_C57BL6NJ_T0004688.1 MGP_C57BL6NJ_G0004067.1 mouse_genomes_project 4 129954997 129958599 + Gm12925 antisense antisense MGP_C57BL6NJ_T0015196.1 MGP_C57BL6NJ_G0013241.1 mouse_genomes_project 4 153869919 153870665 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068403.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135868703 135899588 + MGP_C57BL6NJ_P0068403 Rnf19b protein_coding protein_coding MGP_C57BL6NJ_T0068404.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135868703 135900797 + MGP_C57BL6NJ_P0068404 Rnf19b protein_coding protein_coding MGP_C57BL6NJ_T0068405.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135868841 135895611 + MGP_C57BL6NJ_P0068405 Rnf19b protein_coding protein_coding MGP_C57BL6NJ_T0068406.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135869246 135899588 + MGP_C57BL6NJ_P0068406 Rnf19b protein_coding protein_coding MGP_C57BL6NJ_T0068407.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135894032 135900948 + MGP_C57BL6NJ_P0068407 Rnf19b protein_coding protein_coding MGP_C57BL6NJ_T0068408.1 MGP_C57BL6NJ_G0029235.1 mouse_genomes_project 4 135898946 135900948 + Rnf19b protein_coding processed_transcript MGP_C57BL6NJ_T0004690.1 MGP_C57BL6NJ_G0004069.1 mouse_genomes_project 4 130226655 130244206 - Gm12905 antisense antisense MGP_C57BL6NJ_T0004691.1 MGP_C57BL6NJ_G0004069.1 mouse_genomes_project 4 130226823 130227102 - Gm12905 antisense antisense MGP_C57BL6NJ_T0101641.1 MGP_C57BL6NJ_G0039687.1 mouse_genomes_project 4 13326460 13326528 - Gm26148 snoRNA snoRNA MGP_C57BL6NJ_T0068422.1 MGP_C57BL6NJ_G0029238.1 mouse_genomes_project 4 135958669 135966234 + MGP_C57BL6NJ_P0068422 Fndc5 protein_coding protein_coding MGP_C57BL6NJ_T0010872.1 MGP_C57BL6NJ_G0008957.1 mouse_genomes_project 4 140494141 140494230 + Mir5122 miRNA miRNA MGP_C57BL6NJ_T0015217.1 MGP_C57BL6NJ_G0013262.1 mouse_genomes_project 4 159253939 159254496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070382.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166079499 166082231 + MGP_C57BL6NJ_P0070382 Tnfrsf18 protein_coding protein_coding MGP_C57BL6NJ_T0070383.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166079667 166082227 + Tnfrsf18 protein_coding retained_intron MGP_C57BL6NJ_T0070384.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166079677 166082227 + MGP_C57BL6NJ_P0070384 Tnfrsf18 protein_coding protein_coding MGP_C57BL6NJ_T0070385.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166079677 166082227 + MGP_C57BL6NJ_P0070385 Tnfrsf18 protein_coding protein_coding MGP_C57BL6NJ_T0070386.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166079713 166081707 + Tnfrsf18 protein_coding processed_transcript MGP_C57BL6NJ_T0070387.1 MGP_C57BL6NJ_G0029674.1 mouse_genomes_project 4 166081703 166082231 + Tnfrsf18 protein_coding processed_transcript MGP_C57BL6NJ_T0065220.1 MGP_C57BL6NJ_G0028484.1 mouse_genomes_project 4 13293212 13321570 + MGP_C57BL6NJ_P0065220 Calb1 protein_coding protein_coding MGP_C57BL6NJ_T0065221.1 MGP_C57BL6NJ_G0028484.1 mouse_genomes_project 4 13293214 13307726 + Calb1 protein_coding retained_intron MGP_C57BL6NJ_T0065222.1 MGP_C57BL6NJ_G0028484.1 mouse_genomes_project 4 13297405 13308024 + Calb1 protein_coding retained_intron MGP_C57BL6NJ_T0000475.1 MGP_C57BL6NJ_G0000394.1 mouse_genomes_project 4 82626462 82626594 - Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0069243.1 MGP_C57BL6NJ_G0029412.1 mouse_genomes_project 4 145538938 145600445 + MGP_C57BL6NJ_P0069243 Ece1 protein_coding protein_coding MGP_C57BL6NJ_T0069244.1 MGP_C57BL6NJ_G0029412.1 mouse_genomes_project 4 145600061 145622078 + MGP_C57BL6NJ_P0069244 Ece1 protein_coding protein_coding MGP_C57BL6NJ_T0069245.1 MGP_C57BL6NJ_G0029412.1 mouse_genomes_project 4 145600272 145612628 + Ece1 protein_coding processed_transcript MGP_C57BL6NJ_T0069246.1 MGP_C57BL6NJ_G0029412.1 mouse_genomes_project 4 145600316 145654432 + MGP_C57BL6NJ_P0069246 Ece1 protein_coding protein_coding MGP_C57BL6NJ_T0103184.1 MGP_C57BL6NJ_G0040978.1 mouse_genomes_project 4 154051565 156444270 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004678.1 MGP_C57BL6NJ_G0004059.1 mouse_genomes_project 4 123560490 123580120 + 9530034E10Rik antisense antisense MGP_C57BL6NJ_T0069592.1 MGP_C57BL6NJ_G0029504.1 mouse_genomes_project 4 152189632 152192352 - MGP_C57BL6NJ_P0069592 protein_coding protein_coding MGP_C57BL6NJ_T0069593.1 MGP_C57BL6NJ_G0029504.1 mouse_genomes_project 4 152189633 152192352 - MGP_C57BL6NJ_P0069593 protein_coding protein_coding MGP_C57BL6NJ_T0069857.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159351055 159417253 - MGP_C57BL6NJ_P0069857 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069858.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159352739 159364330 - MGP_C57BL6NJ_P0069858 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069859.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159352986 159361803 - MGP_C57BL6NJ_P0069859 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069860.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361020 159416014 - MGP_C57BL6NJ_P0069860 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069861.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361504 159378594 - MGP_C57BL6NJ_P0069861 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069862.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361508 159388795 - MGP_C57BL6NJ_P0069862 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069863.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361513 159404826 - MGP_C57BL6NJ_P0069863 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069864.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361562 159408308 - MGP_C57BL6NJ_P0069864 Spsb1 protein_coding protein_coding MGP_C57BL6NJ_T0069865.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159361655 159417253 - Spsb1 protein_coding processed_transcript MGP_C57BL6NJ_T0069866.1 MGP_C57BL6NJ_G0029577.1 mouse_genomes_project 4 159364078 159417241 - Spsb1 protein_coding processed_transcript MGP_C57BL6NJ_T0068961.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141547416 141559654 - MGP_C57BL6NJ_P0068961 Pdik1l protein_coding protein_coding MGP_C57BL6NJ_T0068962.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141547416 141560310 - MGP_C57BL6NJ_P0068962 Pdik1l protein_coding protein_coding MGP_C57BL6NJ_T0068963.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141547417 141559668 - MGP_C57BL6NJ_P0068963 Pdik1l protein_coding protein_coding MGP_C57BL6NJ_T0068964.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141550959 141559640 - MGP_C57BL6NJ_P0068964 Pdik1l protein_coding protein_coding MGP_C57BL6NJ_T0068965.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141551775 141559665 - MGP_C57BL6NJ_P0068965 Pdik1l protein_coding protein_coding MGP_C57BL6NJ_T0068966.1 MGP_C57BL6NJ_G0029346.1 mouse_genomes_project 4 141555988 141559640 - Pdik1l protein_coding processed_transcript MGP_C57BL6NJ_T0065208.1 MGP_C57BL6NJ_G0028479.1 mouse_genomes_project 4 11798468 11925613 - MGP_C57BL6NJ_P0065208 Slc26a7 protein_coding protein_coding MGP_C57BL6NJ_T0065209.1 MGP_C57BL6NJ_G0028479.1 mouse_genomes_project 4 11801327 11812777 - Slc26a7 protein_coding processed_transcript MGP_C57BL6NJ_T0065210.1 MGP_C57BL6NJ_G0028479.1 mouse_genomes_project 4 11862480 11925309 - MGP_C57BL6NJ_P0065210 Slc26a7 protein_coding protein_coding MGP_C57BL6NJ_T0065211.1 MGP_C57BL6NJ_G0028479.1 mouse_genomes_project 4 11892277 11925477 - MGP_C57BL6NJ_P0065211 Slc26a7 protein_coding protein_coding MGP_C57BL6NJ_T0066227.1 MGP_C57BL6NJ_G0028726.1 mouse_genomes_project 4 56000369 56047791 + MGP_C57BL6NJ_P0066227 Rad23b protein_coding protein_coding MGP_C57BL6NJ_T0066228.1 MGP_C57BL6NJ_G0028726.1 mouse_genomes_project 4 56000376 56020406 + Rad23b protein_coding processed_transcript MGP_C57BL6NJ_T0066229.1 MGP_C57BL6NJ_G0028726.1 mouse_genomes_project 4 56000378 56001511 + Rad23b protein_coding processed_transcript MGP_C57BL6NJ_T0066230.1 MGP_C57BL6NJ_G0028726.1 mouse_genomes_project 4 56000416 56034697 + Rad23b protein_coding processed_transcript MGP_C57BL6NJ_T0065648.1 MGP_C57BL6NJ_G0028600.1 mouse_genomes_project 4 42153151 42155933 + MGP_C57BL6NJ_P0065648 protein_coding protein_coding MGP_C57BL6NJ_T0001551.1 MGP_C57BL6NJ_G0001451.1 mouse_genomes_project 4 103537547 103553244 + TEC TEC MGP_C57BL6NJ_T0008205.1 MGP_C57BL6NJ_G0006698.1 mouse_genomes_project 4 162983833 162985186 - Gm13173 lincRNA lincRNA MGP_C57BL6NJ_T0014922.1 MGP_C57BL6NJ_G0012967.1 mouse_genomes_project 4 55930393 55930610 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066231.1 MGP_C57BL6NJ_G0028727.1 mouse_genomes_project 4 56199517 56205320 - MGP_C57BL6NJ_P0066231 Klf4 protein_coding protein_coding MGP_C57BL6NJ_T0066232.1 MGP_C57BL6NJ_G0028727.1 mouse_genomes_project 4 56203484 56204652 - MGP_C57BL6NJ_P0066232 Klf4 protein_coding protein_coding MGP_C57BL6NJ_T0066233.1 MGP_C57BL6NJ_G0028727.1 mouse_genomes_project 4 56203593 56205307 - MGP_C57BL6NJ_P0066233 Klf4 protein_coding protein_coding MGP_C57BL6NJ_T0014991.1 MGP_C57BL6NJ_G0013036.1 mouse_genomes_project 4 86489009 86489472 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066794.1 MGP_C57BL6NJ_G0028874.1 mouse_genomes_project 4 98605708 98626766 - MGP_C57BL6NJ_P0066794 Eqtn protein_coding protein_coding MGP_C57BL6NJ_T0066795.1 MGP_C57BL6NJ_G0028874.1 mouse_genomes_project 4 98605872 98626717 - MGP_C57BL6NJ_P0066795 Eqtn protein_coding protein_coding MGP_C57BL6NJ_T0070276.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165686574 165689877 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070277.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165686579 165699007 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070278.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165686579 165701101 - MGP_C57BL6NJ_P0070278 Mib2 protein_coding protein_coding MGP_C57BL6NJ_T0070279.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165686580 165688625 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070280.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165687735 165688625 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070281.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165688840 165691481 - MGP_C57BL6NJ_P0070281 Mib2 protein_coding protein_coding MGP_C57BL6NJ_T0070282.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165689521 165690237 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070283.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165693217 165701100 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0070284.1 MGP_C57BL6NJ_G0029651.1 mouse_genomes_project 4 165698944 165701096 - Mib2 protein_coding processed_transcript MGP_C57BL6NJ_T0011837.1 MGP_C57BL6NJ_G0009922.1 mouse_genomes_project 4 105713084 105713358 + Gm22533 misc_RNA misc_RNA MGP_C57BL6NJ_T0067511.1 MGP_C57BL6NJ_G0029023.1 mouse_genomes_project 4 120744531 120781524 + MGP_C57BL6NJ_P0067511 Cyp4a30b protein_coding protein_coding MGP_C57BL6NJ_T0065689.1 MGP_C57BL6NJ_G0028613.1 mouse_genomes_project 4 42583775 42612709 - MGP_C57BL6NJ_P0065689 Vcp protein_coding protein_coding MGP_C57BL6NJ_T0065690.1 MGP_C57BL6NJ_G0028613.1 mouse_genomes_project 4 42597351 42600440 - Vcp protein_coding processed_transcript MGP_C57BL6NJ_T0065691.1 MGP_C57BL6NJ_G0028613.1 mouse_genomes_project 4 42604793 42605817 - Vcp protein_coding processed_transcript MGP_C57BL6NJ_T0065692.1 MGP_C57BL6NJ_G0028613.1 mouse_genomes_project 4 42605770 42612964 - Vcp protein_coding processed_transcript MGP_C57BL6NJ_T0067891.1 MGP_C57BL6NJ_G0029105.1 mouse_genomes_project 4 124482001 124484255 - MGP_C57BL6NJ_P0067891 Olfr1335 protein_coding protein_coding MGP_C57BL6NJ_T0067892.1 MGP_C57BL6NJ_G0029105.1 mouse_genomes_project 4 124482059 124484125 - MGP_C57BL6NJ_P0067892 Olfr1335 protein_coding protein_coding MGP_C57BL6NJ_T0066381.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63384853 63414720 - Fkbp15 protein_coding processed_transcript MGP_C57BL6NJ_T0066382.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63384853 63444618 - MGP_C57BL6NJ_P0066382 Fkbp15 protein_coding protein_coding MGP_C57BL6NJ_T0066383.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63394036 63444696 - MGP_C57BL6NJ_P0066383 Fkbp15 protein_coding protein_coding MGP_C57BL6NJ_T0066384.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63401390 63444642 - MGP_C57BL6NJ_P0066384 Fkbp15 protein_coding protein_coding MGP_C57BL6NJ_T0066385.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63403406 63444682 - MGP_C57BL6NJ_P0066385 Fkbp15 protein_coding protein_coding MGP_C57BL6NJ_T0066386.1 MGP_C57BL6NJ_G0028769.1 mouse_genomes_project 4 63428356 63444617 - Fkbp15 protein_coding processed_transcript MGP_C57BL6NJ_T0018550.1 MGP_C57BL6NJ_G0015964.1 mouse_genomes_project 4 124977216 124978858 + Gm12898 processed_transcript processed_transcript MGP_C57BL6NJ_T0014972.1 MGP_C57BL6NJ_G0013017.1 mouse_genomes_project 4 78172196 78173092 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100415.1 MGP_C57BL6NJ_G0038461.1 mouse_genomes_project 4 160562355 160562515 + Gm23405 snRNA snRNA MGP_C57BL6NJ_T0067398.1 MGP_C57BL6NJ_G0028997.1 mouse_genomes_project 4 114765332 114770963 + MGP_C57BL6NJ_P0067398 Dmrta2 protein_coding protein_coding MGP_C57BL6NJ_T0065091.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6405643 6432904 - Asph protein_coding processed_transcript MGP_C57BL6NJ_T0065092.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6406653 6633049 - MGP_C57BL6NJ_P0065092 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065093.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6406653 6633049 - MGP_C57BL6NJ_P0065093 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065094.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6406653 6633231 - MGP_C57BL6NJ_P0065094 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065095.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537567 6556313 - Asph protein_coding processed_transcript MGP_C57BL6NJ_T0065096.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537946 6633049 - MGP_C57BL6NJ_P0065096 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065097.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537946 6607603 - MGP_C57BL6NJ_P0065097 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065098.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537946 6607603 - MGP_C57BL6NJ_P0065098 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065099.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537946 6607603 - MGP_C57BL6NJ_P0065099 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065100.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6537946 6633049 - MGP_C57BL6NJ_P0065100 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065101.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6566627 6603146 - Asph protein_coding processed_transcript MGP_C57BL6NJ_T0065102.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6569908 6607603 - MGP_C57BL6NJ_P0065102 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065103.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6572954 6633049 - MGP_C57BL6NJ_P0065103 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065104.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6584809 6607603 - MGP_C57BL6NJ_P0065104 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065105.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6585596 6633049 - MGP_C57BL6NJ_P0065105 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065106.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6592923 6633049 - MGP_C57BL6NJ_P0065106 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065107.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6594447 6633049 - MGP_C57BL6NJ_P0065107 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065108.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6594826 6633208 - MGP_C57BL6NJ_P0065108 Asph protein_coding protein_coding MGP_C57BL6NJ_T0065109.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6597016 6607603 - Asph protein_coding processed_transcript MGP_C57BL6NJ_T0065110.1 MGP_C57BL6NJ_G0028455.1 mouse_genomes_project 4 6632199 6632973 - Asph protein_coding processed_transcript MGP_C57BL6NJ_T0014759.1 MGP_C57BL6NJ_G0012804.1 mouse_genomes_project 4 8490141 8490556 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068896.1 MGP_C57BL6NJ_G0029332.1 mouse_genomes_project 4 141236777 141254628 - MGP_C57BL6NJ_P0068896 Lin28a protein_coding protein_coding MGP_C57BL6NJ_T0068897.1 MGP_C57BL6NJ_G0029332.1 mouse_genomes_project 4 141240629 141248183 - MGP_C57BL6NJ_P0068897 Lin28a protein_coding protein_coding MGP_C57BL6NJ_T0068898.1 MGP_C57BL6NJ_G0029332.1 mouse_genomes_project 4 141240635 141245208 - MGP_C57BL6NJ_P0068898 Lin28a protein_coding protein_coding MGP_C57BL6NJ_T0068899.1 MGP_C57BL6NJ_G0029332.1 mouse_genomes_project 4 141242345 141254169 - MGP_C57BL6NJ_P0068899 Lin28a protein_coding protein_coding MGP_C57BL6NJ_T0015020.1 MGP_C57BL6NJ_G0013065.1 mouse_genomes_project 4 97433915 97434173 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010808.1 MGP_C57BL6NJ_G0008893.1 mouse_genomes_project 4 7885613 7885744 - Mir3471-1 miRNA miRNA MGP_C57BL6NJ_T0008092.1 MGP_C57BL6NJ_G0006616.1 mouse_genomes_project 4 110992596 111000111 - Tmem61 lincRNA lincRNA MGP_C57BL6NJ_T0008093.1 MGP_C57BL6NJ_G0006616.1 mouse_genomes_project 4 110992828 110996886 - Tmem61 lincRNA lincRNA MGP_C57BL6NJ_T0066872.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102331279 102343325 + Inadl protein_coding processed_transcript MGP_C57BL6NJ_T0066873.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102331285 102665621 + MGP_C57BL6NJ_P0066873 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066874.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102331349 102492381 + MGP_C57BL6NJ_P0066874 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066875.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102331349 102612674 + MGP_C57BL6NJ_P0066875 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066876.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102331386 102395928 + MGP_C57BL6NJ_P0066876 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066877.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102356637 102371901 + Inadl protein_coding processed_transcript MGP_C57BL6NJ_T0066878.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102376981 102381204 + Inadl protein_coding processed_transcript MGP_C57BL6NJ_T0066879.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102381142 102442264 + MGP_C57BL6NJ_P0066879 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066880.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102390614 102664376 + MGP_C57BL6NJ_P0066880 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066881.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102439410 102452810 + Inadl protein_coding processed_transcript MGP_C57BL6NJ_T0066882.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102463585 102476948 + MGP_C57BL6NJ_P0066882 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066883.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102484462 102665621 + MGP_C57BL6NJ_P0066883 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0066884.1 MGP_C57BL6NJ_G0028892.1 mouse_genomes_project 4 102484701 102628173 + MGP_C57BL6NJ_P0066884 Inadl protein_coding protein_coding MGP_C57BL6NJ_T0065861.1 MGP_C57BL6NJ_G0028635.1 mouse_genomes_project 4 43345299 43346124 - MGP_C57BL6NJ_P0065861 Spag8 protein_coding protein_coding MGP_C57BL6NJ_T0065862.1 MGP_C57BL6NJ_G0028635.1 mouse_genomes_project 4 43345299 43347517 - MGP_C57BL6NJ_P0065862 Spag8 protein_coding protein_coding MGP_C57BL6NJ_T0065863.1 MGP_C57BL6NJ_G0028635.1 mouse_genomes_project 4 43345640 43347559 - MGP_C57BL6NJ_P0065863 Spag8 protein_coding protein_coding MGP_C57BL6NJ_T0069274.1 MGP_C57BL6NJ_G0029415.1 mouse_genomes_project 4 145974258 145985189 + MGP_C57BL6NJ_P0069274 Sh2d5 protein_coding protein_coding MGP_C57BL6NJ_T0069275.1 MGP_C57BL6NJ_G0029415.1 mouse_genomes_project 4 145974268 145981136 + MGP_C57BL6NJ_P0069275 Sh2d5 protein_coding protein_coding MGP_C57BL6NJ_T0069276.1 MGP_C57BL6NJ_G0029415.1 mouse_genomes_project 4 145974278 145979547 + Sh2d5 protein_coding processed_transcript MGP_C57BL6NJ_T0069278.1 MGP_C57BL6NJ_G0029415.1 mouse_genomes_project 4 145974319 145985189 + MGP_C57BL6NJ_P0069278 Sh2d5 protein_coding protein_coding MGP_C57BL6NJ_T0069279.1 MGP_C57BL6NJ_G0029415.1 mouse_genomes_project 4 145980591 145982968 + Sh2d5 protein_coding retained_intron MGP_C57BL6NJ_T0099446.1 MGP_C57BL6NJ_G0037503.1 mouse_genomes_project 4 86640482 86640963 + Gm26968 sense_intronic sense_intronic MGP_C57BL6NJ_T0014797.1 MGP_C57BL6NJ_G0012842.1 mouse_genomes_project 4 19821720 19823148 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008002.1 MGP_C57BL6NJ_G0006541.1 mouse_genomes_project 4 37751477 38058758 - lincRNA lincRNA MGP_C57BL6NJ_T0065618.1 MGP_C57BL6NJ_G0028585.1 mouse_genomes_project 4 41218687 41237220 + MGP_C57BL6NJ_P0065618 Il11ra1 protein_coding protein_coding MGP_C57BL6NJ_T0001561.1 MGP_C57BL6NJ_G0001461.1 mouse_genomes_project 4 149312202 149313477 - TEC TEC MGP_C57BL6NJ_T0001562.1 MGP_C57BL6NJ_G0001461.1 mouse_genomes_project 4 149312208 149313477 - TEC TEC MGP_C57BL6NJ_T0018514.1 MGP_C57BL6NJ_G0015939.1 mouse_genomes_project 4 53323949 53338882 + 4930552N02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0008007.1 MGP_C57BL6NJ_G0006546.1 mouse_genomes_project 4 42661788 42670990 + Gm26881 lincRNA lincRNA MGP_C57BL6NJ_T0100379.1 MGP_C57BL6NJ_G0038425.1 mouse_genomes_project 4 117573160 117573267 - Gm24099 snRNA snRNA MGP_C57BL6NJ_T0065247.1 MGP_C57BL6NJ_G0028494.1 mouse_genomes_project 4 17295915 17342181 + MGP_C57BL6NJ_P0065247 Gm12353 protein_coding protein_coding MGP_C57BL6NJ_T0066046.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46085596 46127704 - MGP_C57BL6NJ_P0066046 Xpa protein_coding protein_coding MGP_C57BL6NJ_T0066049.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46105376 46115837 - Xpa protein_coding processed_transcript MGP_C57BL6NJ_T0066050.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46105376 46115804 - MGP_C57BL6NJ_P0066050 Xpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066051.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46105376 46127704 - MGP_C57BL6NJ_P0066051 Xpa protein_coding protein_coding MGP_C57BL6NJ_T0066052.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46113123 46127697 - MGP_C57BL6NJ_P0066052 Xpa protein_coding protein_coding MGP_C57BL6NJ_T0066053.1 MGP_C57BL6NJ_G0028674.1 mouse_genomes_project 4 46114566 46116749 - Xpa protein_coding processed_transcript MGP_C57BL6NJ_T0069926.1 MGP_C57BL6NJ_G0029590.1 mouse_genomes_project 4 160594921 160599635 + MGP_C57BL6NJ_P0069926 Uts2 protein_coding protein_coding MGP_C57BL6NJ_T0010899.1 MGP_C57BL6NJ_G0008984.1 mouse_genomes_project 4 162837109 162837204 - Gm25779 miRNA miRNA MGP_C57BL6NJ_T0070289.1 MGP_C57BL6NJ_G0029654.1 mouse_genomes_project 4 165772846 165778207 + MGP_C57BL6NJ_P0070289 Tmem240 protein_coding protein_coding MGP_C57BL6NJ_T0070290.1 MGP_C57BL6NJ_G0029654.1 mouse_genomes_project 4 165772850 165778629 + Tmem240 protein_coding retained_intron MGP_C57BL6NJ_T0070291.1 MGP_C57BL6NJ_G0029654.1 mouse_genomes_project 4 165772920 165778629 + MGP_C57BL6NJ_P0070291 Tmem240 protein_coding protein_coding MGP_C57BL6NJ_T0069725.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157824099 157847950 + MGP_C57BL6NJ_P0069725 Exosc10 protein_coding protein_coding MGP_C57BL6NJ_T0069726.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157824101 157847939 + Exosc10 protein_coding processed_transcript MGP_C57BL6NJ_T0069727.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157824125 157847942 + MGP_C57BL6NJ_P0069727 Exosc10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069728.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157824132 157847950 + MGP_C57BL6NJ_P0069728 Exosc10 protein_coding protein_coding MGP_C57BL6NJ_T0069729.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157828644 157829741 + MGP_C57BL6NJ_P0069729 Exosc10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069730.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157831926 157842162 + Exosc10 protein_coding retained_intron MGP_C57BL6NJ_T0069731.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157833998 157842051 + Exosc10 protein_coding retained_intron MGP_C57BL6NJ_T0069732.1 MGP_C57BL6NJ_G0029556.1 mouse_genomes_project 4 157841714 157847870 + Exosc10 protein_coding processed_transcript MGP_C57BL6NJ_T0068088.1 MGP_C57BL6NJ_G0029158.1 mouse_genomes_project 4 129365221 129377929 - MGP_C57BL6NJ_P0068088 Ppie protein_coding protein_coding MGP_C57BL6NJ_T0068089.1 MGP_C57BL6NJ_G0029158.1 mouse_genomes_project 4 129365426 129374876 - Ppie protein_coding processed_transcript MGP_C57BL6NJ_T0068090.1 MGP_C57BL6NJ_G0029158.1 mouse_genomes_project 4 129365807 129377003 - Ppie protein_coding processed_transcript MGP_C57BL6NJ_T0068091.1 MGP_C57BL6NJ_G0029158.1 mouse_genomes_project 4 129374379 129377908 - Ppie protein_coding processed_transcript MGP_C57BL6NJ_T0014842.1 MGP_C57BL6NJ_G0012887.1 mouse_genomes_project 4 31644695 31645040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065048.1 MGP_C57BL6NJ_G0028447.1 mouse_genomes_project 4 3007005 3017025 - MGP_C57BL6NJ_P0065048 Cyp7a1 protein_coding protein_coding MGP_C57BL6NJ_T0065049.1 MGP_C57BL6NJ_G0028447.1 mouse_genomes_project 4 3014198 3017027 - Cyp7a1 protein_coding processed_transcript MGP_C57BL6NJ_T0066739.1 MGP_C57BL6NJ_G0028848.1 mouse_genomes_project 4 91964863 91966028 - MGP_C57BL6NJ_P0066739 Ifnab protein_coding protein_coding MGP_C57BL6NJ_T0004605.1 MGP_C57BL6NJ_G0004005.1 mouse_genomes_project 4 43325505 43335495 - Gm12473 antisense antisense MGP_C57BL6NJ_T0018553.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131367960 131369551 + 9930104L06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018554.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131367970 131370367 + 9930104L06Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018555.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131367974 131374812 + 9930104L06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018556.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131367977 131376857 + 9930104L06Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018557.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131367986 131376858 + 9930104L06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018558.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131369690 131374961 + 9930104L06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018559.1 MGP_C57BL6NJ_G0015967.1 mouse_genomes_project 4 131375332 131376066 + 9930104L06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0065751.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43022605 43069903 + MGP_C57BL6NJ_P0065751 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065752.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43022683 43057611 + MGP_C57BL6NJ_P0065752 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065753.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43022696 43059005 + Rusc2 protein_coding processed_transcript MGP_C57BL6NJ_T0065754.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43024081 43057655 + MGP_C57BL6NJ_P0065754 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065755.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43024142 43057570 + MGP_C57BL6NJ_P0065755 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065756.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43024911 43064734 + Rusc2 protein_coding processed_transcript MGP_C57BL6NJ_T0065757.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43024964 43057708 + MGP_C57BL6NJ_P0065757 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065758.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43041871 43069888 + Rusc2 protein_coding retained_intron MGP_C57BL6NJ_T0065759.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43041886 43057554 + MGP_C57BL6NJ_P0065759 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065760.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43047068 43069903 + MGP_C57BL6NJ_P0065760 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065761.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43047135 43065270 + Rusc2 protein_coding processed_transcript MGP_C57BL6NJ_T0065762.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43047190 43057994 + MGP_C57BL6NJ_P0065762 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065763.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43047962 43064617 + MGP_C57BL6NJ_P0065763 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065764.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43057510 43069464 + MGP_C57BL6NJ_P0065764 Rusc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065765.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43057510 43069903 + MGP_C57BL6NJ_P0065765 Rusc2 protein_coding protein_coding MGP_C57BL6NJ_T0065766.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43059252 43069180 + Rusc2 protein_coding processed_transcript MGP_C57BL6NJ_T0065767.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43065306 43067188 + Rusc2 protein_coding retained_intron MGP_C57BL6NJ_T0065768.1 MGP_C57BL6NJ_G0028620.1 mouse_genomes_project 4 43066405 43066826 + Rusc2 protein_coding retained_intron MGP_C57BL6NJ_T0067609.1 MGP_C57BL6NJ_G0029046.1 mouse_genomes_project 4 121634326 121674780 + MGP_C57BL6NJ_P0067609 Pik3r3 protein_coding protein_coding MGP_C57BL6NJ_T0067610.1 MGP_C57BL6NJ_G0029046.1 mouse_genomes_project 4 121634369 121719811 + MGP_C57BL6NJ_P0067610 Pik3r3 protein_coding protein_coding MGP_C57BL6NJ_T0067611.1 MGP_C57BL6NJ_G0029046.1 mouse_genomes_project 4 121634404 121716596 + MGP_C57BL6NJ_P0067611 Pik3r3 protein_coding protein_coding MGP_C57BL6NJ_T0065851.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43325901 43345209 + MGP_C57BL6NJ_P0065851 Npr2 protein_coding protein_coding MGP_C57BL6NJ_T0065852.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43326151 43345209 + MGP_C57BL6NJ_P0065852 Npr2 protein_coding protein_coding MGP_C57BL6NJ_T0065853.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43335077 43345209 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0065854.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43335216 43337063 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0065855.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43335223 43338344 + MGP_C57BL6NJ_P0065855 Npr2 protein_coding protein_coding MGP_C57BL6NJ_T0065856.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43335245 43345209 + MGP_C57BL6NJ_P0065856 Npr2 protein_coding protein_coding MGP_C57BL6NJ_T0065857.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43338100 43342143 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0065858.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43340524 43344274 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0065859.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43341161 43342365 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0065860.1 MGP_C57BL6NJ_G0028634.1 mouse_genomes_project 4 43341969 43344195 + Npr2 protein_coding processed_transcript MGP_C57BL6NJ_T0100382.1 MGP_C57BL6NJ_G0038428.1 mouse_genomes_project 4 122391629 122391734 + Gm26355 snRNA snRNA MGP_C57BL6NJ_T0004697.1 MGP_C57BL6NJ_G0004075.1 mouse_genomes_project 4 134864094 134897605 - Csmd2os antisense antisense MGP_C57BL6NJ_T0004698.1 MGP_C57BL6NJ_G0004075.1 mouse_genomes_project 4 134864094 134894732 - Csmd2os antisense antisense MGP_C57BL6NJ_T0015072.1 MGP_C57BL6NJ_G0013117.1 mouse_genomes_project 4 115319361 115319629 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101646.1 MGP_C57BL6NJ_G0039692.1 mouse_genomes_project 4 32431565 32431690 - Gm24341 snoRNA snoRNA MGP_C57BL6NJ_T0068003.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126240429 126298523 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068004.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126240455 126381638 + MGP_C57BL6NJ_P0068004 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068005.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126240514 126307122 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068006.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126240529 126292744 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068007.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126240576 126307087 + MGP_C57BL6NJ_P0068007 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068008.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126291158 126381638 + MGP_C57BL6NJ_P0068008 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068009.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126297250 126381616 + MGP_C57BL6NJ_P0068009 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068010.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126306082 126380713 + MGP_C57BL6NJ_P0068010 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068011.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126351761 126381638 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068012.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126353287 126374063 + MGP_C57BL6NJ_P0068012 Scmh1 protein_coding protein_coding MGP_C57BL6NJ_T0068013.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126367297 126381638 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068014.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126367350 126381255 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068015.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126379282 126380674 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0068016.1 MGP_C57BL6NJ_G0029132.1 mouse_genomes_project 4 126380608 126381640 + Scmh1 protein_coding processed_transcript MGP_C57BL6NJ_T0100393.1 MGP_C57BL6NJ_G0038439.1 mouse_genomes_project 4 133736952 133737058 - Gm25600 snRNA snRNA MGP_C57BL6NJ_T0101663.1 MGP_C57BL6NJ_G0039709.1 mouse_genomes_project 4 55951608 55951799 - Gm25419 snoRNA snoRNA MGP_C57BL6NJ_T0065500.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 39998130 40023155 - MGP_C57BL6NJ_P0065500 Aptx protein_coding protein_coding MGP_C57BL6NJ_T0065501.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 39998130 40023435 - MGP_C57BL6NJ_P0065501 Aptx protein_coding protein_coding MGP_C57BL6NJ_T0065502.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 40000672 40023403 - MGP_C57BL6NJ_P0065502 Aptx protein_coding protein_coding MGP_C57BL6NJ_T0065503.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 40001910 40023428 - MGP_C57BL6NJ_P0065503 Aptx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065504.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 40008167 40014758 - Aptx protein_coding processed_transcript MGP_C57BL6NJ_T0065505.1 MGP_C57BL6NJ_G0028556.1 mouse_genomes_project 4 40015270 40022957 - MGP_C57BL6NJ_P0065505 Aptx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065498.1 MGP_C57BL6NJ_G0028555.1 mouse_genomes_project 4 39796322 39802868 + MGP_C57BL6NJ_P0065498 Tmem215 protein_coding protein_coding MGP_C57BL6NJ_T0065499.1 MGP_C57BL6NJ_G0028555.1 mouse_genomes_project 4 39797272 39799776 + MGP_C57BL6NJ_P0065499 Tmem215 protein_coding protein_coding MGP_C57BL6NJ_T0103177.1 MGP_C57BL6NJ_G0040971.1 mouse_genomes_project 4 152190225 152192325 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066779.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98232240 98241112 - Plaa protein_coding processed_transcript MGP_C57BL6NJ_T0066780.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98233893 98272903 - MGP_C57BL6NJ_P0066780 Plaa protein_coding protein_coding MGP_C57BL6NJ_T0066781.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98236413 98248224 - MGP_C57BL6NJ_P0066781 Plaa protein_coding protein_coding MGP_C57BL6NJ_T0066782.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98238587 98248203 - Plaa protein_coding processed_transcript MGP_C57BL6NJ_T0066783.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98250485 98272794 - Plaa protein_coding processed_transcript MGP_C57BL6NJ_T0066784.1 MGP_C57BL6NJ_G0028870.1 mouse_genomes_project 4 98254412 98272840 - Plaa protein_coding processed_transcript MGP_C57BL6NJ_T0004585.1 MGP_C57BL6NJ_G0003989.1 mouse_genomes_project 4 17684502 17690381 - 4930480G23Rik antisense antisense MGP_C57BL6NJ_T0015188.1 MGP_C57BL6NJ_G0013233.1 mouse_genomes_project 4 152889273 152889822 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010836.1 MGP_C57BL6NJ_G0008921.1 mouse_genomes_project 4 59292439 59292526 - Mir3095 miRNA miRNA MGP_C57BL6NJ_T0018539.1 MGP_C57BL6NJ_G0015957.1 mouse_genomes_project 4 113260103 113287554 - Gm12743 processed_transcript processed_transcript MGP_C57BL6NJ_T0014889.1 MGP_C57BL6NJ_G0012934.1 mouse_genomes_project 4 47517803 47519125 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069665.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157114955 157141936 - MGP_C57BL6NJ_P0069665 Plod1 protein_coding protein_coding MGP_C57BL6NJ_T0069666.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157120983 157126283 - MGP_C57BL6NJ_P0069666 Plod1 protein_coding protein_coding MGP_C57BL6NJ_T0069667.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157127649 157141911 - Plod1 protein_coding retained_intron MGP_C57BL6NJ_T0069668.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157128036 157128914 - Plod1 protein_coding retained_intron MGP_C57BL6NJ_T0069669.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157132795 157141894 - MGP_C57BL6NJ_P0069669 Plod1 protein_coding protein_coding MGP_C57BL6NJ_T0069670.1 MGP_C57BL6NJ_G0029540.1 mouse_genomes_project 4 157136867 157141877 - Plod1 protein_coding processed_transcript MGP_C57BL6NJ_T0067451.1 MGP_C57BL6NJ_G0029004.1 mouse_genomes_project 4 116850542 116900395 + Skint8 protein_coding processed_transcript MGP_C57BL6NJ_T0067452.1 MGP_C57BL6NJ_G0029004.1 mouse_genomes_project 4 116850548 116909619 + MGP_C57BL6NJ_P0067452 Skint8 protein_coding protein_coding MGP_C57BL6NJ_T0067453.1 MGP_C57BL6NJ_G0029004.1 mouse_genomes_project 4 116850716 116907842 + Skint8 protein_coding retained_intron MGP_C57BL6NJ_T0067454.1 MGP_C57BL6NJ_G0029004.1 mouse_genomes_project 4 116850778 116920903 + MGP_C57BL6NJ_P0067454 Skint8 protein_coding protein_coding MGP_C57BL6NJ_T0015146.1 MGP_C57BL6NJ_G0013191.1 mouse_genomes_project 4 136667173 136667462 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015024.1 MGP_C57BL6NJ_G0013069.1 mouse_genomes_project 4 99814787 99815070 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069892.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 159788992 160160959 + MGP_C57BL6NJ_P0069892 Rere protein_coding protein_coding MGP_C57BL6NJ_T0069893.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 159789158 159789813 + Rere protein_coding processed_transcript MGP_C57BL6NJ_T0069894.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 159918887 160153273 + MGP_C57BL6NJ_P0069894 Rere protein_coding unknown_likely_coding MGP_C57BL6NJ_T0069895.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 159927539 159991599 + MGP_C57BL6NJ_P0069895 Rere protein_coding protein_coding MGP_C57BL6NJ_T0069896.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 160010538 160160955 + MGP_C57BL6NJ_P0069896 Rere protein_coding protein_coding MGP_C57BL6NJ_T0069897.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 160098603 160099511 + Rere protein_coding processed_transcript MGP_C57BL6NJ_T0069898.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 160098672 160145853 + Rere protein_coding processed_transcript MGP_C57BL6NJ_T0069899.1 MGP_C57BL6NJ_G0029584.1 mouse_genomes_project 4 160151049 160153612 + MGP_C57BL6NJ_P0069899 Rere protein_coding protein_coding MGP_C57BL6NJ_T0014913.1 MGP_C57BL6NJ_G0012958.1 mouse_genomes_project 4 54364208 54364595 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007991.1 MGP_C57BL6NJ_G0006530.1 mouse_genomes_project 4 21125134 21270986 + Gm11884 lincRNA lincRNA MGP_C57BL6NJ_T0001553.1 MGP_C57BL6NJ_G0001453.1 mouse_genomes_project 4 113290633 113292921 - TEC TEC MGP_C57BL6NJ_T0068930.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141370231 141453667 - MGP_C57BL6NJ_P0068930 Cep85 protein_coding protein_coding MGP_C57BL6NJ_T0068931.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141370239 141453536 - MGP_C57BL6NJ_P0068931 Cep85 protein_coding protein_coding MGP_C57BL6NJ_T0068932.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141371471 141375256 - Cep85 protein_coding processed_transcript MGP_C57BL6NJ_T0068933.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141374845 141381891 - Cep85 protein_coding retained_intron MGP_C57BL6NJ_T0068934.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141400454 141402693 - Cep85 protein_coding retained_intron MGP_C57BL6NJ_T0068935.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141404110 141405131 - Cep85 protein_coding processed_transcript MGP_C57BL6NJ_T0068936.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141404306 141453640 - MGP_C57BL6NJ_P0068936 Cep85 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068937.1 MGP_C57BL6NJ_G0029338.1 mouse_genomes_project 4 141439316 141453606 - Cep85 protein_coding retained_intron MGP_C57BL6NJ_T0004715.1 MGP_C57BL6NJ_G0004089.1 mouse_genomes_project 4 143414914 143423036 + Gm13008 antisense antisense MGP_C57BL6NJ_T0015169.1 MGP_C57BL6NJ_G0013214.1 mouse_genomes_project 4 144158297 144159264 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065442.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33505898 33551309 - MGP_C57BL6NJ_P0065442 Cfap206 protein_coding protein_coding MGP_C57BL6NJ_T0065443.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33506300 33539695 - Cfap206 protein_coding processed_transcript MGP_C57BL6NJ_T0065444.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33529845 33551281 - MGP_C57BL6NJ_P0065444 Cfap206 protein_coding protein_coding MGP_C57BL6NJ_T0065445.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33542520 33551298 - MGP_C57BL6NJ_P0065445 Cfap206 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065446.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33542551 33551298 - MGP_C57BL6NJ_P0065446 Cfap206 protein_coding protein_coding MGP_C57BL6NJ_T0065447.1 MGP_C57BL6NJ_G0028541.1 mouse_genomes_project 4 33544692 33551298 - Cfap206 protein_coding processed_transcript MGP_C57BL6NJ_T0103185.1 MGP_C57BL6NJ_G0040979.1 mouse_genomes_project 4 154051565 156444275 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069643.1 MGP_C57BL6NJ_G0029533.1 mouse_genomes_project 4 155262030 155265171 + MGP_C57BL6NJ_P0069643 protein_coding protein_coding MGP_C57BL6NJ_T0069544.1 MGP_C57BL6NJ_G0029485.1 mouse_genomes_project 4 149957105 149990246 - MGP_C57BL6NJ_P0069544 Ctrc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069546.1 MGP_C57BL6NJ_G0029485.1 mouse_genomes_project 4 149980394 149990340 - Ctrc protein_coding processed_transcript MGP_C57BL6NJ_T0069547.1 MGP_C57BL6NJ_G0029485.1 mouse_genomes_project 4 149980394 149990266 - MGP_C57BL6NJ_P0069547 Ctrc protein_coding protein_coding MGP_C57BL6NJ_T0069548.1 MGP_C57BL6NJ_G0029485.1 mouse_genomes_project 4 149980399 149990342 - MGP_C57BL6NJ_P0069548 Ctrc protein_coding protein_coding MGP_C57BL6NJ_T0069549.1 MGP_C57BL6NJ_G0029485.1 mouse_genomes_project 4 149988818 149989211 - Ctrc protein_coding processed_transcript MGP_C57BL6NJ_T0067154.1 MGP_C57BL6NJ_G0028953.1 mouse_genomes_project 4 111647516 111658381 + MGP_C57BL6NJ_P0067154 Cdcp2 protein_coding protein_coding MGP_C57BL6NJ_T0068567.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136910489 136957506 + MGP_C57BL6NJ_P0068567 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068568.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136912864 136957506 + MGP_C57BL6NJ_P0068568 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068569.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136912968 136957506 + MGP_C57BL6NJ_P0068569 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068570.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136921843 136957506 + MGP_C57BL6NJ_P0068570 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068571.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136921844 136957211 + MGP_C57BL6NJ_P0068571 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068572.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136921844 136957211 + MGP_C57BL6NJ_P0068572 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068573.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136921844 136957211 + MGP_C57BL6NJ_P0068573 Adgrb2 protein_coding protein_coding MGP_C57BL6NJ_T0068574.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136942976 136944967 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0068575.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136943169 136945647 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0068576.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136945301 136945678 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0068577.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136946736 136949461 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0068578.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136953648 136956436 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0068579.1 MGP_C57BL6NJ_G0029265.1 mouse_genomes_project 4 136955987 136957303 + Adgrb2 protein_coding retained_intron MGP_C57BL6NJ_T0015133.1 MGP_C57BL6NJ_G0013178.1 mouse_genomes_project 4 131132055 131132694 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004685.1 MGP_C57BL6NJ_G0004066.1 mouse_genomes_project 4 129321195 129323235 - Gm12923 antisense antisense MGP_C57BL6NJ_T0070264.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165654824 165660346 + Cdk11b protein_coding processed_transcript MGP_C57BL6NJ_T0070265.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165654839 165681836 + MGP_C57BL6NJ_P0070265 Cdk11b protein_coding protein_coding MGP_C57BL6NJ_T0070266.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165654850 165655667 + Cdk11b protein_coding processed_transcript MGP_C57BL6NJ_T0070267.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165654853 165681836 + MGP_C57BL6NJ_P0070267 Cdk11b protein_coding protein_coding MGP_C57BL6NJ_T0070268.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165654880 165681836 + MGP_C57BL6NJ_P0070268 Cdk11b protein_coding protein_coding MGP_C57BL6NJ_T0070269.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165664173 165669829 + Cdk11b protein_coding processed_transcript MGP_C57BL6NJ_T0070270.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165679100 165680303 + Cdk11b protein_coding processed_transcript MGP_C57BL6NJ_T0070271.1 MGP_C57BL6NJ_G0029649.1 mouse_genomes_project 4 165679265 165680190 + Cdk11b protein_coding processed_transcript MGP_C57BL6NJ_T0014931.1 MGP_C57BL6NJ_G0012976.1 mouse_genomes_project 4 59460301 59460718 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065486.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39493977 39500317 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065487.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39493981 39514214 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065488.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39495053 39534578 - MGP_C57BL6NJ_P0065488 Ddx58 protein_coding protein_coding MGP_C57BL6NJ_T0065489.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39500544 39507786 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065490.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39500626 39534450 - MGP_C57BL6NJ_P0065490 Ddx58 protein_coding protein_coding MGP_C57BL6NJ_T0065491.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39517044 39534505 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065492.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39517489 39534472 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065493.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39520109 39521920 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0065494.1 MGP_C57BL6NJ_G0028552.1 mouse_genomes_project 4 39520622 39534575 - Ddx58 protein_coding processed_transcript MGP_C57BL6NJ_T0008113.1 MGP_C57BL6NJ_G0006632.1 mouse_genomes_project 4 130220272 130226436 - Gm26606 lincRNA lincRNA MGP_C57BL6NJ_T0004764.1 MGP_C57BL6NJ_G0004127.1 mouse_genomes_project 4 160995810 160998923 + 4930589P08Rik antisense antisense MGP_C57BL6NJ_T0069298.1 MGP_C57BL6NJ_G0029424.1 mouse_genomes_project 4 146494649 146510734 - MGP_C57BL6NJ_P0069298 Ubxn10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069299.1 MGP_C57BL6NJ_G0029424.1 mouse_genomes_project 4 146504050 146510778 - MGP_C57BL6NJ_P0069299 Ubxn10 protein_coding protein_coding MGP_C57BL6NJ_T0069300.1 MGP_C57BL6NJ_G0029424.1 mouse_genomes_project 4 146504050 146522680 - MGP_C57BL6NJ_P0069300 Ubxn10 protein_coding protein_coding MGP_C57BL6NJ_T0069301.1 MGP_C57BL6NJ_G0029424.1 mouse_genomes_project 4 146504350 146510369 - MGP_C57BL6NJ_P0069301 Ubxn10 protein_coding protein_coding MGP_C57BL6NJ_T0069305.1 MGP_C57BL6NJ_G0029424.1 mouse_genomes_project 4 146517389 146522649 - Ubxn10 protein_coding processed_transcript MGP_C57BL6NJ_T0008203.1 MGP_C57BL6NJ_G0006696.1 mouse_genomes_project 4 160403943 160420622 + Gm13049 lincRNA lincRNA MGP_C57BL6NJ_T0065730.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676496 42788627 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0065731.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676512 42891051 + MGP_C57BL6NJ_P0065731 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065732.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676519 42793973 + Unc13b protein_coding processed_transcript MGP_C57BL6NJ_T0065733.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676527 42791059 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0065734.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676616 42889802 + MGP_C57BL6NJ_P0065734 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065735.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676616 42889802 + MGP_C57BL6NJ_P0065735 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065736.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42676623 42889785 + MGP_C57BL6NJ_P0065736 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065737.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42739904 42864542 + Unc13b protein_coding processed_transcript MGP_C57BL6NJ_T0065738.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42800465 42859308 + Unc13b protein_coding processed_transcript MGP_C57BL6NJ_T0065739.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42803078 42863860 + MGP_C57BL6NJ_P0065739 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065740.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42840337 42891060 + MGP_C57BL6NJ_P0065740 Unc13b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0065741.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42856862 42859723 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0065742.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42860572 42873153 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0065743.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42875750 42882843 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0065744.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42882120 42885013 + MGP_C57BL6NJ_P0065744 Unc13b protein_coding protein_coding MGP_C57BL6NJ_T0065745.1 MGP_C57BL6NJ_G0028618.1 mouse_genomes_project 4 42883413 42888333 + Unc13b protein_coding retained_intron MGP_C57BL6NJ_T0069785.1 MGP_C57BL6NJ_G0029564.1 mouse_genomes_project 4 158460224 158461954 - MGP_C57BL6NJ_P0069785 Cort protein_coding protein_coding MGP_C57BL6NJ_T0011840.1 MGP_C57BL6NJ_G0009925.1 mouse_genomes_project 4 116961869 116962178 - Gm25844 misc_RNA misc_RNA MGP_C57BL6NJ_T0004750.1 MGP_C57BL6NJ_G0004116.1 mouse_genomes_project 4 158257198 158258621 - Gm13205 antisense antisense MGP_C57BL6NJ_T0008088.1 MGP_C57BL6NJ_G0006613.1 mouse_genomes_project 4 107714743 107833709 + Gm12718 lincRNA lincRNA MGP_C57BL6NJ_T0008089.1 MGP_C57BL6NJ_G0006613.1 mouse_genomes_project 4 107714764 107833691 + Gm12718 lincRNA lincRNA MGP_C57BL6NJ_T0069322.1 MGP_C57BL6NJ_G0029431.1 mouse_genomes_project 4 146713936 146733412 - MGP_C57BL6NJ_P0069322 Otud3 protein_coding protein_coding MGP_C57BL6NJ_T0069179.1 MGP_C57BL6NJ_G0029395.1 mouse_genomes_project 4 144173818 144191268 + MGP_C57BL6NJ_P0069179 Lactbl1 protein_coding protein_coding MGP_C57BL6NJ_T0015138.1 MGP_C57BL6NJ_G0013183.1 mouse_genomes_project 4 133392201 133393144 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101711.1 MGP_C57BL6NJ_G0039757.1 mouse_genomes_project 4 139304330 139304466 + Snora16a snoRNA snoRNA MGP_C57BL6NJ_T0015109.1 MGP_C57BL6NJ_G0013154.1 mouse_genomes_project 4 125293692 125294106 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100350.1 MGP_C57BL6NJ_G0038396.1 mouse_genomes_project 4 49462591 49462697 + Gm22685 snRNA snRNA MGP_C57BL6NJ_T0008068.1 MGP_C57BL6NJ_G0006596.1 mouse_genomes_project 4 96043594 96068812 + Gm12637 lincRNA lincRNA MGP_C57BL6NJ_T0068472.1 MGP_C57BL6NJ_G0029248.1 mouse_genomes_project 4 136355641 136357650 - MGP_C57BL6NJ_P0068472 Tssk3 protein_coding protein_coding MGP_C57BL6NJ_T0015149.1 MGP_C57BL6NJ_G0013194.1 mouse_genomes_project 4 139192479 139192871 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100348.1 MGP_C57BL6NJ_G0038394.1 mouse_genomes_project 4 43829353 43829465 - Gm22706 snRNA snRNA MGP_C57BL6NJ_T0015124.1 MGP_C57BL6NJ_G0013169.1 mouse_genomes_project 4 128136560 128136786 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014970.1 MGP_C57BL6NJ_G0013015.1 mouse_genomes_project 4 77612979 77613694 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015142.1 MGP_C57BL6NJ_G0013187.1 mouse_genomes_project 4 133782512 133782722 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066746.1 MGP_C57BL6NJ_G0028855.1 mouse_genomes_project 4 92116244 92116814 + MGP_C57BL6NJ_P0066746 Ifna6 protein_coding protein_coding MGP_C57BL6NJ_T0066848.1 MGP_C57BL6NJ_G0028887.1 mouse_genomes_project 4 100521398 100589959 - MGP_C57BL6NJ_P0066848 Gm12695 protein_coding protein_coding MGP_C57BL6NJ_T0011827.1 MGP_C57BL6NJ_G0009912.1 mouse_genomes_project 4 51915207 51915476 + Gm22563 misc_RNA misc_RNA MGP_C57BL6NJ_T0068697.1 MGP_C57BL6NJ_G0029288.1 mouse_genomes_project 4 139150167 139184026 - MGP_C57BL6NJ_P0068697 protein_coding protein_coding MGP_C57BL6NJ_T0068698.1 MGP_C57BL6NJ_G0029288.1 mouse_genomes_project 4 139151545 139183814 - MGP_C57BL6NJ_P0068698 protein_coding protein_coding MGP_C57BL6NJ_T0069520.1 MGP_C57BL6NJ_G0029476.1 mouse_genomes_project 4 149731439 149736626 - MGP_C57BL6NJ_P0069520 Tmem82 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069521.1 MGP_C57BL6NJ_G0029476.1 mouse_genomes_project 4 149732296 149736302 - MGP_C57BL6NJ_P0069521 Tmem82 protein_coding protein_coding MGP_C57BL6NJ_T0069522.1 MGP_C57BL6NJ_G0029476.1 mouse_genomes_project 4 149732300 149736045 - Tmem82 protein_coding retained_intron MGP_C57BL6NJ_T0001546.1 MGP_C57BL6NJ_G0001446.1 mouse_genomes_project 4 44484283 44485851 + TEC TEC MGP_C57BL6NJ_T0015171.1 MGP_C57BL6NJ_G0013216.1 mouse_genomes_project 4 144795654 144796336 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066499.1 MGP_C57BL6NJ_G0028802.1 mouse_genomes_project 4 71832215 72039810 - MGP_C57BL6NJ_P0066499 Cdk5rap2 protein_coding protein_coding MGP_C57BL6NJ_T0066500.1 MGP_C57BL6NJ_G0028802.1 mouse_genomes_project 4 71838413 72039785 - MGP_C57BL6NJ_P0066500 Cdk5rap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066501.1 MGP_C57BL6NJ_G0028802.1 mouse_genomes_project 4 71853740 71886039 - MGP_C57BL6NJ_P0066501 Cdk5rap2 protein_coding protein_coding MGP_C57BL6NJ_T0066502.1 MGP_C57BL6NJ_G0028802.1 mouse_genomes_project 4 71857861 71859243 - Cdk5rap2 protein_coding processed_transcript MGP_C57BL6NJ_T0066503.1 MGP_C57BL6NJ_G0028802.1 mouse_genomes_project 4 72028386 72033042 - Cdk5rap2 protein_coding processed_transcript MGP_C57BL6NJ_T0066283.1 MGP_C57BL6NJ_G0028740.1 mouse_genomes_project 4 58541163 58697539 + protein_coding processed_transcript MGP_C57BL6NJ_T0066284.1 MGP_C57BL6NJ_G0028740.1 mouse_genomes_project 4 58576696 58734461 + MGP_C57BL6NJ_P0066284 protein_coding protein_coding MGP_C57BL6NJ_T0066285.1 MGP_C57BL6NJ_G0028740.1 mouse_genomes_project 4 58582317 58734461 + MGP_C57BL6NJ_P0066285 protein_coding protein_coding MGP_C57BL6NJ_T0066286.1 MGP_C57BL6NJ_G0028740.1 mouse_genomes_project 4 58612734 58695819 + MGP_C57BL6NJ_P0066286 protein_coding protein_coding MGP_C57BL6NJ_T0066287.1 MGP_C57BL6NJ_G0028740.1 mouse_genomes_project 4 58665501 58695666 + MGP_C57BL6NJ_P0066287 protein_coding protein_coding MGP_C57BL6NJ_T0100399.1 MGP_C57BL6NJ_G0038445.1 mouse_genomes_project 4 139581827 139581931 - Gm24762 snRNA snRNA MGP_C57BL6NJ_T0103170.1 MGP_C57BL6NJ_G0040964.1 mouse_genomes_project 4 128953852 128967408 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010891.1 MGP_C57BL6NJ_G0008976.1 mouse_genomes_project 4 148731733 148731797 + Gm25951 miRNA miRNA MGP_C57BL6NJ_T0066492.1 MGP_C57BL6NJ_G0028800.1 mouse_genomes_project 4 68196564 68211781 + MGP_C57BL6NJ_P0066492 Tlr4 protein_coding protein_coding MGP_C57BL6NJ_T0066493.1 MGP_C57BL6NJ_G0028800.1 mouse_genomes_project 4 68196593 68300432 + MGP_C57BL6NJ_P0066493 Tlr4 protein_coding protein_coding MGP_C57BL6NJ_T0066494.1 MGP_C57BL6NJ_G0028800.1 mouse_genomes_project 4 68196599 68208410 + Tlr4 protein_coding processed_transcript MGP_C57BL6NJ_T0066495.1 MGP_C57BL6NJ_G0028800.1 mouse_genomes_project 4 68197182 68208599 + Tlr4 protein_coding processed_transcript MGP_C57BL6NJ_T0069611.1 MGP_C57BL6NJ_G0029517.1 mouse_genomes_project 4 152753382 152778787 - MGP_C57BL6NJ_P0069611 Pramef12 protein_coding protein_coding MGP_C57BL6NJ_T0069612.1 MGP_C57BL6NJ_G0029517.1 mouse_genomes_project 4 152757417 152778740 - MGP_C57BL6NJ_P0069612 Pramef12 protein_coding protein_coding MGP_C57BL6NJ_T0065986.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45161890 45185764 + MGP_C57BL6NJ_P0065986 Trmt10b protein_coding protein_coding MGP_C57BL6NJ_T0065987.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45161918 45169152 + MGP_C57BL6NJ_P0065987 Trmt10b protein_coding protein_coding MGP_C57BL6NJ_T0065988.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45165177 45174431 + Trmt10b protein_coding processed_transcript MGP_C57BL6NJ_T0065989.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45165197 45184775 + Trmt10b protein_coding processed_transcript MGP_C57BL6NJ_T0065990.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45165197 45169149 + Trmt10b protein_coding processed_transcript MGP_C57BL6NJ_T0065991.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45165197 45184775 + MGP_C57BL6NJ_P0065991 Trmt10b protein_coding protein_coding MGP_C57BL6NJ_T0065992.1 MGP_C57BL6NJ_G0028661.1 mouse_genomes_project 4 45183730 45184681 + Trmt10b protein_coding processed_transcript MGP_C57BL6NJ_T0010838.1 MGP_C57BL6NJ_G0008923.1 mouse_genomes_project 4 69045265 69045342 + Gm44497 miRNA miRNA MGP_C57BL6NJ_T0008025.1 MGP_C57BL6NJ_G0006560.1 mouse_genomes_project 4 55747749 55927821 - Gm12514 lincRNA lincRNA MGP_C57BL6NJ_T0008026.1 MGP_C57BL6NJ_G0006560.1 mouse_genomes_project 4 55747977 55752043 - Gm12514 lincRNA lincRNA MGP_C57BL6NJ_T0010825.1 MGP_C57BL6NJ_G0008910.1 mouse_genomes_project 4 40189017 40189100 - Mir5123 miRNA miRNA MGP_C57BL6NJ_T0010817.1 MGP_C57BL6NJ_G0008902.1 mouse_genomes_project 4 21539866 21539956 - Gm25978 miRNA miRNA MGP_C57BL6NJ_T0008199.1 MGP_C57BL6NJ_G0006692.1 mouse_genomes_project 4 159217698 159218389 - Gm13073 lincRNA lincRNA MGP_C57BL6NJ_T0015044.1 MGP_C57BL6NJ_G0013089.1 mouse_genomes_project 4 105515006 105515720 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066469.1 MGP_C57BL6NJ_G0028790.1 mouse_genomes_project 4 64708660 64714709 + MGP_C57BL6NJ_P0066469 Atp6v1g1 protein_coding protein_coding MGP_C57BL6NJ_T0066032.1 MGP_C57BL6NJ_G0028671.1 mouse_genomes_project 4 45956468 46043427 + MGP_C57BL6NJ_P0066032 Tmod1 protein_coding protein_coding MGP_C57BL6NJ_T0066033.1 MGP_C57BL6NJ_G0028671.1 mouse_genomes_project 4 45956742 46015645 + MGP_C57BL6NJ_P0066033 Tmod1 protein_coding protein_coding MGP_C57BL6NJ_T0066034.1 MGP_C57BL6NJ_G0028671.1 mouse_genomes_project 4 45998156 46024456 + Tmod1 protein_coding processed_transcript MGP_C57BL6NJ_T0066035.1 MGP_C57BL6NJ_G0028671.1 mouse_genomes_project 4 46005402 46015629 + Tmod1 protein_coding processed_transcript MGP_C57BL6NJ_T0066036.1 MGP_C57BL6NJ_G0028671.1 mouse_genomes_project 4 46024990 46040084 + Tmod1 protein_coding processed_transcript MGP_C57BL6NJ_T0066236.1 MGP_C57BL6NJ_G0028730.1 mouse_genomes_project 4 57481919 57483432 + MGP_C57BL6NJ_P0066236 Actl7a protein_coding protein_coding MGP_C57BL6NJ_T0010859.1 MGP_C57BL6NJ_G0008944.1 mouse_genomes_project 4 126660302 126660394 + Mir30f miRNA miRNA MGP_C57BL6NJ_T0103132.1 MGP_C57BL6NJ_G0040926.1 mouse_genomes_project 4 43492589 43492891 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008003.1 MGP_C57BL6NJ_G0006542.1 mouse_genomes_project 4 39612979 39617453 + 4930509K18Rik lincRNA lincRNA MGP_C57BL6NJ_T0067894.1 MGP_C57BL6NJ_G0029107.1 mouse_genomes_project 4 124504506 124512191 - MGP_C57BL6NJ_P0067894 Olfr1333 protein_coding protein_coding MGP_C57BL6NJ_T0067895.1 MGP_C57BL6NJ_G0029107.1 mouse_genomes_project 4 124504506 124512201 - MGP_C57BL6NJ_P0067895 Olfr1333 protein_coding protein_coding MGP_C57BL6NJ_T0014828.1 MGP_C57BL6NJ_G0012873.1 mouse_genomes_project 4 26977491 26977908 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069532.1 MGP_C57BL6NJ_G0029480.1 mouse_genomes_project 4 149813722 149815471 - MGP_C57BL6NJ_P0069532 protein_coding protein_coding MGP_C57BL6NJ_T0068927.1 MGP_C57BL6NJ_G0029337.1 mouse_genomes_project 4 141367779 141369163 - MGP_C57BL6NJ_P0068927 Sh3bgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0068928.1 MGP_C57BL6NJ_G0029337.1 mouse_genomes_project 4 141367786 141369113 - MGP_C57BL6NJ_P0068928 Sh3bgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0068929.1 MGP_C57BL6NJ_G0029337.1 mouse_genomes_project 4 141368213 141369111 - Sh3bgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0069720.1 MGP_C57BL6NJ_G0029554.1 mouse_genomes_project 4 157706033 157712392 + Mtor protein_coding retained_intron MGP_C57BL6NJ_T0069721.1 MGP_C57BL6NJ_G0029554.1 mouse_genomes_project 4 157706033 157823354 + MGP_C57BL6NJ_P0069721 Mtor protein_coding protein_coding MGP_C57BL6NJ_T0069722.1 MGP_C57BL6NJ_G0029554.1 mouse_genomes_project 4 157706047 157712396 + MGP_C57BL6NJ_P0069722 Mtor protein_coding protein_coding MGP_C57BL6NJ_T0069724.1 MGP_C57BL6NJ_G0029554.1 mouse_genomes_project 4 157809899 157813232 + Mtor protein_coding retained_intron MGP_C57BL6NJ_T0010852.1 MGP_C57BL6NJ_G0008937.1 mouse_genomes_project 4 112710718 112710811 + Mir6397 miRNA miRNA MGP_C57BL6NJ_T0067263.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112796354 112810946 + MGP_C57BL6NJ_P0067263 Echdc2 protein_coding protein_coding MGP_C57BL6NJ_T0067264.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112796383 112810945 + MGP_C57BL6NJ_P0067264 Echdc2 protein_coding protein_coding MGP_C57BL6NJ_T0067265.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112796383 112810709 + MGP_C57BL6NJ_P0067265 Echdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067266.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112796405 112810944 + MGP_C57BL6NJ_P0067266 Echdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067267.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112796435 112810706 + MGP_C57BL6NJ_P0067267 Echdc2 protein_coding protein_coding MGP_C57BL6NJ_T0067268.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112801352 112810570 + MGP_C57BL6NJ_P0067268 Echdc2 protein_coding protein_coding MGP_C57BL6NJ_T0067269.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112801424 112807045 + Echdc2 protein_coding retained_intron MGP_C57BL6NJ_T0067270.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112801780 112810945 + Echdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0067271.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112801791 112805489 + Echdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0067272.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112803797 112810797 + MGP_C57BL6NJ_P0067272 Echdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067273.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112804300 112808737 + Echdc2 protein_coding retained_intron MGP_C57BL6NJ_T0067274.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112805327 112810697 + Echdc2 protein_coding retained_intron MGP_C57BL6NJ_T0067275.1 MGP_C57BL6NJ_G0028971.1 mouse_genomes_project 4 112805447 112810726 + MGP_C57BL6NJ_P0067275 Echdc2 protein_coding protein_coding MGP_C57BL6NJ_T0067249.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112626658 112643940 - MGP_C57BL6NJ_P0067249 Podn protein_coding protein_coding MGP_C57BL6NJ_T0067250.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112626660 112636165 - MGP_C57BL6NJ_P0067250 Podn protein_coding protein_coding MGP_C57BL6NJ_T0067251.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112626664 112640549 - MGP_C57BL6NJ_P0067251 Podn protein_coding protein_coding MGP_C57BL6NJ_T0067252.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112626718 112643803 - MGP_C57BL6NJ_P0067252 Podn protein_coding protein_coding MGP_C57BL6NJ_T0067253.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112626721 112643804 - Podn protein_coding processed_transcript MGP_C57BL6NJ_T0067254.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112629588 112633376 - MGP_C57BL6NJ_P0067254 Podn protein_coding protein_coding MGP_C57BL6NJ_T0067255.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112638870 112642836 - Podn protein_coding processed_transcript MGP_C57BL6NJ_T0067256.1 MGP_C57BL6NJ_G0028969.1 mouse_genomes_project 4 112639042 112644187 - Podn protein_coding processed_transcript MGP_C57BL6NJ_T0066651.1 MGP_C57BL6NJ_G0028827.1 mouse_genomes_project 4 87834166 88109719 + MGP_C57BL6NJ_P0066651 Cntln protein_coding protein_coding MGP_C57BL6NJ_T0066652.1 MGP_C57BL6NJ_G0028827.1 mouse_genomes_project 4 87834261 87910776 + MGP_C57BL6NJ_P0066652 Cntln protein_coding protein_coding MGP_C57BL6NJ_T0066653.1 MGP_C57BL6NJ_G0028827.1 mouse_genomes_project 4 87834322 88109715 + MGP_C57BL6NJ_P0066653 Cntln protein_coding protein_coding MGP_C57BL6NJ_T0066654.1 MGP_C57BL6NJ_G0028827.1 mouse_genomes_project 4 88073192 88109716 + MGP_C57BL6NJ_P0066654 Cntln protein_coding protein_coding MGP_C57BL6NJ_T0067380.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114142495 114164007 + MGP_C57BL6NJ_P0067380 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067381.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114142959 114180497 + MGP_C57BL6NJ_P0067381 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067382.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114142982 114160111 + MGP_C57BL6NJ_P0067382 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067383.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114143001 114158815 + Ttc39a protein_coding processed_transcript MGP_C57BL6NJ_T0067384.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114150648 114164075 + MGP_C57BL6NJ_P0067384 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067385.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114151520 114180134 + MGP_C57BL6NJ_P0067385 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067386.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114151646 114157250 + Ttc39a protein_coding processed_transcript MGP_C57BL6NJ_T0067387.1 MGP_C57BL6NJ_G0028992.1 mouse_genomes_project 4 114156814 114162238 + MGP_C57BL6NJ_P0067387 Ttc39a protein_coding protein_coding MGP_C57BL6NJ_T0067753.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122814308 122832110 - MGP_C57BL6NJ_P0067753 Rnf220 protein_coding protein_coding MGP_C57BL6NJ_T0067754.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122814316 123049986 - MGP_C57BL6NJ_P0067754 Rnf220 protein_coding protein_coding MGP_C57BL6NJ_T0067755.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122814780 122921468 - MGP_C57BL6NJ_P0067755 Rnf220 protein_coding protein_coding MGP_C57BL6NJ_T0067756.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122819372 122828328 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0067757.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122820280 122832684 - MGP_C57BL6NJ_P0067757 Rnf220 protein_coding protein_coding MGP_C57BL6NJ_T0067758.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122827945 122832296 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0067759.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122828232 122831965 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0067760.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122828742 122842872 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0067761.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 122850125 123049883 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0067762.1 MGP_C57BL6NJ_G0029073.1 mouse_genomes_project 4 123041692 123046467 - Rnf220 protein_coding processed_transcript MGP_C57BL6NJ_T0004628.1 MGP_C57BL6NJ_G0004026.1 mouse_genomes_project 4 85524231 85525138 + Gm11269 antisense antisense MGP_C57BL6NJ_T0069856.1 MGP_C57BL6NJ_G0029576.1 mouse_genomes_project 4 159178594 159210955 - MGP_C57BL6NJ_P0069856 Slc25a33 protein_coding protein_coding MGP_C57BL6NJ_T0069389.1 MGP_C57BL6NJ_G0029449.1 mouse_genomes_project 4 147962658 148205557 - MGP_C57BL6NJ_P0069389 Igsf21 protein_coding protein_coding MGP_C57BL6NJ_T0018497.1 MGP_C57BL6NJ_G0015927.1 mouse_genomes_project 4 13583676 13700954 + A530072M11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0100360.1 MGP_C57BL6NJ_G0038406.1 mouse_genomes_project 4 86415940 86416081 - Gm25899 snRNA snRNA MGP_C57BL6NJ_T0101669.1 MGP_C57BL6NJ_G0039715.1 mouse_genomes_project 4 57668812 57668938 + Gm22300 snoRNA snoRNA MGP_C57BL6NJ_T0004574.1 MGP_C57BL6NJ_G0003981.1 mouse_genomes_project 4 3469060 3486074 + Gm11802 antisense antisense MGP_C57BL6NJ_T0066944.1 MGP_C57BL6NJ_G0028906.1 mouse_genomes_project 4 104142368 104536712 + MGP_C57BL6NJ_P0066944 Ror1 protein_coding protein_coding MGP_C57BL6NJ_T0008140.1 MGP_C57BL6NJ_G0006649.1 mouse_genomes_project 4 136155874 136167722 + Gm26722 lincRNA lincRNA MGP_C57BL6NJ_T0066758.1 MGP_C57BL6NJ_G0028864.1 mouse_genomes_project 4 93594053 93600906 + MGP_C57BL6NJ_P0066758 Zfp352 protein_coding protein_coding MGP_C57BL6NJ_T0066759.1 MGP_C57BL6NJ_G0028864.1 mouse_genomes_project 4 93598828 93600484 + MGP_C57BL6NJ_P0066759 Zfp352 protein_coding protein_coding MGP_C57BL6NJ_T0069102.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143367302 143371779 + MGP_C57BL6NJ_P0069102 Gale protein_coding protein_coding MGP_C57BL6NJ_T0069103.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143367332 143369205 + MGP_C57BL6NJ_P0069103 Gale protein_coding protein_coding MGP_C57BL6NJ_T0069104.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143367335 143370448 + Gale protein_coding retained_intron MGP_C57BL6NJ_T0069105.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143367392 143369195 + MGP_C57BL6NJ_P0069105 Gale protein_coding protein_coding MGP_C57BL6NJ_T0069106.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143368740 143371779 + MGP_C57BL6NJ_P0069106 Gale protein_coding protein_coding MGP_C57BL6NJ_T0069107.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143368770 143370502 + Gale protein_coding retained_intron MGP_C57BL6NJ_T0069108.1 MGP_C57BL6NJ_G0029379.1 mouse_genomes_project 4 143369194 143371304 + Gale protein_coding retained_intron MGP_C57BL6NJ_T0069007.1 MGP_C57BL6NJ_G0029357.1 mouse_genomes_project 4 142058743 142085192 - MGP_C57BL6NJ_P0069007 Ldlrap1 protein_coding protein_coding MGP_C57BL6NJ_T0069008.1 MGP_C57BL6NJ_G0029357.1 mouse_genomes_project 4 142063765 142067297 - Ldlrap1 protein_coding retained_intron MGP_C57BL6NJ_T0069009.1 MGP_C57BL6NJ_G0029357.1 mouse_genomes_project 4 142066605 142068040 - Ldlrap1 protein_coding retained_intron MGP_C57BL6NJ_T0068802.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140228489 140305175 + MGP_C57BL6NJ_P0068802 Wasf2 protein_coding protein_coding MGP_C57BL6NJ_T0068803.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140228524 140290526 + MGP_C57BL6NJ_P0068803 Wasf2 protein_coding protein_coding MGP_C57BL6NJ_T0068804.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140228613 140281991 + Wasf2 protein_coding processed_transcript MGP_C57BL6NJ_T0068805.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140281431 140282043 + Wasf2 protein_coding processed_transcript MGP_C57BL6NJ_T0068806.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140281801 140301923 + MGP_C57BL6NJ_P0068806 Wasf2 protein_coding protein_coding MGP_C57BL6NJ_T0068807.1 MGP_C57BL6NJ_G0029310.1 mouse_genomes_project 4 140294436 140295968 + Wasf2 protein_coding processed_transcript MGP_C57BL6NJ_T0065400.1 MGP_C57BL6NJ_G0028531.1 mouse_genomes_project 4 31884340 31900950 - MGP_C57BL6NJ_P0065400 Pm20d2 protein_coding protein_coding MGP_C57BL6NJ_T0065401.1 MGP_C57BL6NJ_G0028531.1 mouse_genomes_project 4 31891699 31901254 - MGP_C57BL6NJ_P0065401 Pm20d2 protein_coding protein_coding MGP_C57BL6NJ_T0099100.1 MGP_C57BL6NJ_G0037164.1 mouse_genomes_project 4 48914181 48914293 - Gm24573 rRNA rRNA MGP_C57BL6NJ_T0069606.1 MGP_C57BL6NJ_G0029513.1 mouse_genomes_project 4 152497989 152503221 - MGP_C57BL6NJ_P0069606 protein_coding protein_coding MGP_C57BL6NJ_T0008018.1 MGP_C57BL6NJ_G0006556.1 mouse_genomes_project 4 53799843 53808720 - AI427809 lincRNA lincRNA MGP_C57BL6NJ_T0008019.1 MGP_C57BL6NJ_G0006556.1 mouse_genomes_project 4 53800380 53801035 - AI427809 lincRNA lincRNA MGP_C57BL6NJ_T0008020.1 MGP_C57BL6NJ_G0006556.1 mouse_genomes_project 4 53800942 53803980 - AI427809 lincRNA lincRNA MGP_C57BL6NJ_T0008021.1 MGP_C57BL6NJ_G0006556.1 mouse_genomes_project 4 53801219 53802319 - AI427809 lincRNA lincRNA MGP_C57BL6NJ_T0101658.1 MGP_C57BL6NJ_G0039704.1 mouse_genomes_project 4 49046820 49046945 + Gm23746 snoRNA snoRNA MGP_C57BL6NJ_T0015118.1 MGP_C57BL6NJ_G0013163.1 mouse_genomes_project 4 127305795 127306036 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015212.1 MGP_C57BL6NJ_G0013257.1 mouse_genomes_project 4 157249054 157249827 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014845.1 MGP_C57BL6NJ_G0012890.1 mouse_genomes_project 4 31914773 31914963 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004622.1 MGP_C57BL6NJ_G0004020.1 mouse_genomes_project 4 63177413 63187944 + Gm12910 antisense antisense MGP_C57BL6NJ_T0069740.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878723 157897416 - MGP_C57BL6NJ_P0069740 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069741.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878723 157897439 - MGP_C57BL6NJ_P0069741 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069742.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878723 157897416 - MGP_C57BL6NJ_P0069742 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069743.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878723 157897416 - MGP_C57BL6NJ_P0069743 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069744.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878728 157897182 - MGP_C57BL6NJ_P0069744 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069745.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878729 157882480 - Tardbp protein_coding processed_transcript MGP_C57BL6NJ_T0069746.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878729 157888551 - MGP_C57BL6NJ_P0069746 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069747.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157878826 157889056 - MGP_C57BL6NJ_P0069747 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069748.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157881807 157887855 - Tardbp protein_coding processed_transcript MGP_C57BL6NJ_T0069749.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157881951 157886760 - Tardbp protein_coding processed_transcript MGP_C57BL6NJ_T0069750.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157882100 157887632 - Tardbp protein_coding processed_transcript MGP_C57BL6NJ_T0069751.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157882260 157897185 - MGP_C57BL6NJ_P0069751 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069752.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157882977 157888147 - MGP_C57BL6NJ_P0069752 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069753.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157883057 157891770 - MGP_C57BL6NJ_P0069753 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069754.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886500 157890470 - MGP_C57BL6NJ_P0069754 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069755.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886504 157890465 - MGP_C57BL6NJ_P0069755 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069756.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886504 157897178 - MGP_C57BL6NJ_P0069756 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069757.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886505 157889130 - MGP_C57BL6NJ_P0069757 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069758.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886505 157897178 - MGP_C57BL6NJ_P0069758 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069759.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886642 157890392 - MGP_C57BL6NJ_P0069759 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069760.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157886825 157888460 - MGP_C57BL6NJ_P0069760 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069761.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887087 157889066 - MGP_C57BL6NJ_P0069761 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069762.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887230 157895142 - MGP_C57BL6NJ_P0069762 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069763.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887333 157895142 - MGP_C57BL6NJ_P0069763 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069764.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887333 157895142 - MGP_C57BL6NJ_P0069764 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069765.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887387 157891877 - MGP_C57BL6NJ_P0069765 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069766.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157887814 157897190 - MGP_C57BL6NJ_P0069766 Tardbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069767.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157888384 157897174 - MGP_C57BL6NJ_P0069767 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069768.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157890467 157896743 - MGP_C57BL6NJ_P0069768 Tardbp protein_coding protein_coding MGP_C57BL6NJ_T0069769.1 MGP_C57BL6NJ_G0029559.1 mouse_genomes_project 4 157894864 157897178 - Tardbp protein_coding retained_intron MGP_C57BL6NJ_T0068608.1 MGP_C57BL6NJ_G0029270.1 mouse_genomes_project 4 137155405 137156153 - Gm853 protein_coding processed_transcript MGP_C57BL6NJ_T0068609.1 MGP_C57BL6NJ_G0029270.1 mouse_genomes_project 4 137155405 137168690 - MGP_C57BL6NJ_P0068609 Gm853 protein_coding protein_coding MGP_C57BL6NJ_T0014956.1 MGP_C57BL6NJ_G0013001.1 mouse_genomes_project 4 73625282 73626272 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014914.1 MGP_C57BL6NJ_G0012959.1 mouse_genomes_project 4 54460775 54461179 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100376.1 MGP_C57BL6NJ_G0038422.1 mouse_genomes_project 4 113189981 113190088 - Gm25827 snRNA snRNA MGP_C57BL6NJ_T0067736.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122684433 122712407 - MGP_C57BL6NJ_P0067736 Kif2c protein_coding protein_coding MGP_C57BL6NJ_T0067737.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122684937 122703534 - MGP_C57BL6NJ_P0067737 Kif2c protein_coding protein_coding MGP_C57BL6NJ_T0067738.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122689471 122690205 - Kif2c protein_coding retained_intron MGP_C57BL6NJ_T0067739.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122698472 122712310 - Kif2c protein_coding retained_intron MGP_C57BL6NJ_T0067740.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122698474 122712374 - Kif2c protein_coding processed_transcript MGP_C57BL6NJ_T0067741.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122699212 122712360 - Kif2c protein_coding retained_intron MGP_C57BL6NJ_T0067742.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122699753 122703516 - Kif2c protein_coding processed_transcript MGP_C57BL6NJ_T0067743.1 MGP_C57BL6NJ_G0029070.1 mouse_genomes_project 4 122699796 122703532 - MGP_C57BL6NJ_P0067743 Kif2c protein_coding protein_coding MGP_C57BL6NJ_T0069575.1 MGP_C57BL6NJ_G0029492.1 mouse_genomes_project 4 151599777 151622024 + MGP_C57BL6NJ_P0069575 Lrrc38 protein_coding protein_coding MGP_C57BL6NJ_T0004707.1 MGP_C57BL6NJ_G0004082.1 mouse_genomes_project 4 139533100 139539481 - Gm12981 antisense antisense MGP_C57BL6NJ_T0100357.1 MGP_C57BL6NJ_G0038403.1 mouse_genomes_project 4 69654033 69654204 + Gm23738 snRNA snRNA MGP_C57BL6NJ_T0065296.1 MGP_C57BL6NJ_G0028507.1 mouse_genomes_project 4 19729242 19807844 + Faxc protein_coding processed_transcript MGP_C57BL6NJ_T0065297.1 MGP_C57BL6NJ_G0028507.1 mouse_genomes_project 4 19729244 19808449 + MGP_C57BL6NJ_P0065297 Faxc protein_coding protein_coding MGP_C57BL6NJ_T0065298.1 MGP_C57BL6NJ_G0028507.1 mouse_genomes_project 4 19729246 19758806 + Faxc protein_coding processed_transcript MGP_C57BL6NJ_T0065299.1 MGP_C57BL6NJ_G0028507.1 mouse_genomes_project 4 19729270 19810537 + Faxc protein_coding processed_transcript MGP_C57BL6NJ_T0065300.1 MGP_C57BL6NJ_G0028507.1 mouse_genomes_project 4 19768008 19770360 + Faxc protein_coding processed_transcript MGP_C57BL6NJ_T0018504.1 MGP_C57BL6NJ_G0015932.1 mouse_genomes_project 4 32022611 32030415 - Gm11934 processed_transcript processed_transcript MGP_C57BL6NJ_T0066294.1 MGP_C57BL6NJ_G0028744.1 mouse_genomes_project 4 58887155 59058251 - MGP_C57BL6NJ_P0066294 Svep1 protein_coding protein_coding MGP_C57BL6NJ_T0066295.1 MGP_C57BL6NJ_G0028744.1 mouse_genomes_project 4 58991819 59058267 - Svep1 protein_coding processed_transcript MGP_C57BL6NJ_T0066296.1 MGP_C57BL6NJ_G0028744.1 mouse_genomes_project 4 58993180 59058514 - Svep1 protein_coding processed_transcript MGP_C57BL6NJ_T0066297.1 MGP_C57BL6NJ_G0028744.1 mouse_genomes_project 4 59030093 59058343 - Svep1 protein_coding processed_transcript MGP_C57BL6NJ_T0014762.1 MGP_C57BL6NJ_G0012807.1 mouse_genomes_project 4 9242389 9249891 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100400.1 MGP_C57BL6NJ_G0038446.1 mouse_genomes_project 4 139996546 139996653 - Gm24913 snRNA snRNA MGP_C57BL6NJ_T0008108.1 MGP_C57BL6NJ_G0006627.1 mouse_genomes_project 4 123049385 123053536 + Gm12827 lincRNA lincRNA MGP_C57BL6NJ_T0068409.1 MGP_C57BL6NJ_G0029236.1 mouse_genomes_project 4 135923247 135929316 + MGP_C57BL6NJ_P0068409 Tmem54 protein_coding protein_coding MGP_C57BL6NJ_T0068410.1 MGP_C57BL6NJ_G0029236.1 mouse_genomes_project 4 135923273 135929316 + MGP_C57BL6NJ_P0068410 Tmem54 protein_coding protein_coding MGP_C57BL6NJ_T0068411.1 MGP_C57BL6NJ_G0029236.1 mouse_genomes_project 4 135923300 135929207 + MGP_C57BL6NJ_P0068411 Tmem54 protein_coding protein_coding MGP_C57BL6NJ_T0068412.1 MGP_C57BL6NJ_G0029236.1 mouse_genomes_project 4 135924568 135928234 + MGP_C57BL6NJ_P0068412 Tmem54 protein_coding protein_coding MGP_C57BL6NJ_T0015207.1 MGP_C57BL6NJ_G0013252.1 mouse_genomes_project 4 156563001 156563405 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0065112.1 MGP_C57BL6NJ_G0028457.1 mouse_genomes_project 4 7918516 7942439 + MGP_C57BL6NJ_P0065112 2610301B20Rik protein_coding protein_coding MGP_C57BL6NJ_T0065113.1 MGP_C57BL6NJ_G0028457.1 mouse_genomes_project 4 7918543 7936490 + 2610301B20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065114.1 MGP_C57BL6NJ_G0028457.1 mouse_genomes_project 4 7918583 7941091 + 2610301B20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0065115.1 MGP_C57BL6NJ_G0028457.1 mouse_genomes_project 4 7918586 7942443 + MGP_C57BL6NJ_P0065115 2610301B20Rik protein_coding protein_coding MGP_C57BL6NJ_T0065116.1 MGP_C57BL6NJ_G0028457.1 mouse_genomes_project 4 7922880 7934910 + 2610301B20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0010894.1 MGP_C57BL6NJ_G0008979.1 mouse_genomes_project 4 157376922 157376983 - Mir7022 miRNA miRNA MGP_C57BL6NJ_T0012096.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123973216 123975966 + MGP_C57BL6NJ_P0012096 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012097.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123973225 123974521 + polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0012098.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123973225 123975966 + MGP_C57BL6NJ_P0012098 polymorphic_pseudogene nonsense_mediated_decay MGP_C57BL6NJ_T0012099.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123973240 123975966 + MGP_C57BL6NJ_P0012099 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012100.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123974543 123975717 + polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0067842.1 MGP_C57BL6NJ_G0010159.1 mouse_genomes_project 4 123973259 123975973 + MGP_C57BL6NJ_P0067842 polymorphic_pseudogene unknown_likely_coding MGP_C57BL6NJ_T0015060.1 MGP_C57BL6NJ_G0013105.1 mouse_genomes_project 4 111889008 111890024 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018576.1 MGP_C57BL6NJ_G0015976.1 mouse_genomes_project 4 164600637 164610190 - Gm13110 processed_transcript processed_transcript MGP_C57BL6NJ_T0101633.1 MGP_C57BL6NJ_G0039679.1 mouse_genomes_project 4 471174 471242 - Gm24016 snoRNA snoRNA MGP_C57BL6NJ_T0018502.1 MGP_C57BL6NJ_G0015930.1 mouse_genomes_project 4 23014469 23353610 + processed_transcript processed_transcript MGP_C57BL6NJ_T0069141.1 MGP_C57BL6NJ_G0029388.1 mouse_genomes_project 4 143751706 143757351 + MGP_C57BL6NJ_P0069141 Zfp46 protein_coding protein_coding MGP_C57BL6NJ_T0069142.1 MGP_C57BL6NJ_G0029388.1 mouse_genomes_project 4 143751798 143757108 + MGP_C57BL6NJ_P0069142 Zfp46 protein_coding protein_coding MGP_C57BL6NJ_T0069143.1 MGP_C57BL6NJ_G0029388.1 mouse_genomes_project 4 143752092 143753499 + Zfp46 protein_coding processed_transcript MGP_C57BL6NJ_T0069144.1 MGP_C57BL6NJ_G0029388.1 mouse_genomes_project 4 143753090 143760966 + MGP_C57BL6NJ_P0069144 Zfp46 protein_coding protein_coding MGP_C57BL6NJ_T0069145.1 MGP_C57BL6NJ_G0029388.1 mouse_genomes_project 4 143753127 143757272 + MGP_C57BL6NJ_P0069145 Zfp46 protein_coding protein_coding MGP_C57BL6NJ_T0066535.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78207979 78747918 - MGP_C57BL6NJ_P0066535 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066536.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78207980 78418122 - MGP_C57BL6NJ_P0066536 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066537.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212441 78901988 - MGP_C57BL6NJ_P0066537 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066538.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78617616 - MGP_C57BL6NJ_P0066538 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066539.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78617616 - MGP_C57BL6NJ_P0066539 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066540.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78617616 - MGP_C57BL6NJ_P0066540 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066541.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78636834 - MGP_C57BL6NJ_P0066541 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066542.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78617595 - MGP_C57BL6NJ_P0066542 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066543.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78212593 78617616 - MGP_C57BL6NJ_P0066543 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066544.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78364751 78384546 - Ptprd protein_coding retained_intron MGP_C57BL6NJ_T0066545.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78366875 78369021 - MGP_C57BL6NJ_P0066545 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066546.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78382500 78390268 - MGP_C57BL6NJ_P0066546 Ptprd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066547.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78417397 78418383 - MGP_C57BL6NJ_P0066547 Ptprd protein_coding protein_coding MGP_C57BL6NJ_T0066548.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78424694 80692410 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066549.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78425670 78617640 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066550.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78899014 80692382 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066551.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 78901239 80692254 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066552.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 79567627 80692254 - Ptprd protein_coding retained_intron MGP_C57BL6NJ_T0066553.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 79738324 80692465 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066554.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 80374423 80692367 - Ptprd protein_coding processed_transcript MGP_C57BL6NJ_T0066555.1 MGP_C57BL6NJ_G0028812.1 mouse_genomes_project 4 80383467 80692358 - Ptprd protein_coding retained_intron MGP_C57BL6NJ_T0067315.1 MGP_C57BL6NJ_G0028981.1 mouse_genomes_project 4 113306771 113455883 - MGP_C57BL6NJ_P0067315 protein_coding protein_coding MGP_C57BL6NJ_T0067316.1 MGP_C57BL6NJ_G0028981.1 mouse_genomes_project 4 113306771 113456178 - MGP_C57BL6NJ_P0067316 protein_coding protein_coding MGP_C57BL6NJ_T0067317.1 MGP_C57BL6NJ_G0028981.1 mouse_genomes_project 4 113308564 113397096 - MGP_C57BL6NJ_P0067317 protein_coding protein_coding MGP_C57BL6NJ_T0065245.1 MGP_C57BL6NJ_G0028493.1 mouse_genomes_project 4 17264007 17287540 + MGP_C57BL6NJ_P0065245 Rmdn1 protein_coding protein_coding MGP_C57BL6NJ_T0065246.1 MGP_C57BL6NJ_G0028493.1 mouse_genomes_project 4 17264052 17297397 + MGP_C57BL6NJ_P0065246 Rmdn1 protein_coding protein_coding MGP_C57BL6NJ_T0067210.1 MGP_C57BL6NJ_G0028963.1 mouse_genomes_project 4 112251709 112260651 - MGP_C57BL6NJ_P0067210 Dmrtb1 protein_coding protein_coding MGP_C57BL6NJ_T0067211.1 MGP_C57BL6NJ_G0028963.1 mouse_genomes_project 4 112251711 112261301 - MGP_C57BL6NJ_P0067211 Dmrtb1 protein_coding protein_coding MGP_C57BL6NJ_T0067212.1 MGP_C57BL6NJ_G0028963.1 mouse_genomes_project 4 112252323 112257591 - Dmrtb1 protein_coding retained_intron MGP_C57BL6NJ_T0067164.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111728556 111755400 + MGP_C57BL6NJ_P0067164 Tmem59 protein_coding protein_coding MGP_C57BL6NJ_T0067165.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111728684 111743376 + MGP_C57BL6NJ_P0067165 Tmem59 protein_coding protein_coding MGP_C57BL6NJ_T0067166.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111728684 111755102 + MGP_C57BL6NJ_P0067166 Tmem59 protein_coding protein_coding MGP_C57BL6NJ_T0067167.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111728824 111743579 + Tmem59 protein_coding retained_intron MGP_C57BL6NJ_T0067168.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111728883 111754910 + MGP_C57BL6NJ_P0067168 Tmem59 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067169.1 MGP_C57BL6NJ_G0028955.1 mouse_genomes_project 4 111729175 111755398 + Tmem59 protein_coding processed_transcript MGP_C57BL6NJ_T0004782.1 MGP_C57BL6NJ_G0004139.1 mouse_genomes_project 4 165885007 165885694 - Mxra8os antisense antisense MGP_C57BL6NJ_T0004602.1 MGP_C57BL6NJ_G0004003.1 mouse_genomes_project 4 43183553 43187867 - Gm12454 antisense antisense MGP_C57BL6NJ_T0004603.1 MGP_C57BL6NJ_G0004003.1 mouse_genomes_project 4 43184782 43187890 - Gm12454 antisense antisense MGP_C57BL6NJ_T0098868.1 MGP_C57BL6NJ_G0036932.1 mouse_genomes_project 4 3191903 3194778 - pseudogene pseudogene MGP_C57BL6NJ_T0014749.1 MGP_C57BL6NJ_G0012794.1 mouse_genomes_project 4 6938937 6939600 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066175.1 MGP_C57BL6NJ_G0028709.1 mouse_genomes_project 4 51530906 51543947 + Cylc2 protein_coding processed_transcript MGP_C57BL6NJ_T0066176.1 MGP_C57BL6NJ_G0028709.1 mouse_genomes_project 4 51530906 51545236 + MGP_C57BL6NJ_P0066176 Cylc2 protein_coding protein_coding MGP_C57BL6NJ_T0066177.1 MGP_C57BL6NJ_G0028709.1 mouse_genomes_project 4 51530906 51544892 + MGP_C57BL6NJ_P0066177 Cylc2 protein_coding protein_coding MGP_C57BL6NJ_T0069235.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145402766 145461277 - MGP_C57BL6NJ_P0069235 Alpl protein_coding protein_coding MGP_C57BL6NJ_T0069236.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145407453 145408181 - Alpl protein_coding processed_transcript MGP_C57BL6NJ_T0069237.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145413571 145429788 - MGP_C57BL6NJ_P0069237 Alpl protein_coding protein_coding MGP_C57BL6NJ_T0069238.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145414872 145445736 - MGP_C57BL6NJ_P0069238 Alpl protein_coding protein_coding MGP_C57BL6NJ_T0069239.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145416091 145448916 - MGP_C57BL6NJ_P0069239 Alpl protein_coding protein_coding MGP_C57BL6NJ_T0069240.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145416635 145459773 - Alpl protein_coding processed_transcript MGP_C57BL6NJ_T0069241.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145419681 145432924 - Alpl protein_coding processed_transcript MGP_C57BL6NJ_T0069242.1 MGP_C57BL6NJ_G0029411.1 mouse_genomes_project 4 145419681 145433133 - Alpl protein_coding processed_transcript MGP_C57BL6NJ_T0101650.1 MGP_C57BL6NJ_G0039696.1 mouse_genomes_project 4 39789391 39789486 - Gm23338 snoRNA snoRNA MGP_C57BL6NJ_T0103136.1 MGP_C57BL6NJ_G0040930.1 mouse_genomes_project 4 62870233 62871683 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069736.1 MGP_C57BL6NJ_G0029558.1 mouse_genomes_project 4 157869080 157870944 + MGP_C57BL6NJ_P0069736 Masp2 protein_coding protein_coding MGP_C57BL6NJ_T0069737.1 MGP_C57BL6NJ_G0029558.1 mouse_genomes_project 4 157869090 157881841 + MGP_C57BL6NJ_P0069737 Masp2 protein_coding protein_coding MGP_C57BL6NJ_T0069738.1 MGP_C57BL6NJ_G0029558.1 mouse_genomes_project 4 157869094 157876536 + Masp2 protein_coding retained_intron MGP_C57BL6NJ_T0069739.1 MGP_C57BL6NJ_G0029558.1 mouse_genomes_project 4 157869101 157870944 + Masp2 protein_coding retained_intron MGP_C57BL6NJ_T0004655.1 MGP_C57BL6NJ_G0004043.1 mouse_genomes_project 4 111676793 111686431 + Gm12802 antisense antisense MGP_C57BL6NJ_T0008123.1 MGP_C57BL6NJ_G0006638.1 mouse_genomes_project 4 131688410 131701763 + 1700041M05Rik lincRNA lincRNA MGP_C57BL6NJ_T0100403.1 MGP_C57BL6NJ_G0038449.1 mouse_genomes_project 4 142957797 142957898 + Gm23106 snRNA snRNA MGP_C57BL6NJ_T0069195.1 MGP_C57BL6NJ_G0029403.1 mouse_genomes_project 4 144899953 144941504 - MGP_C57BL6NJ_P0069195 Cdc42 protein_coding protein_coding MGP_C57BL6NJ_T0069196.1 MGP_C57BL6NJ_G0029403.1 mouse_genomes_project 4 144902019 144941483 - MGP_C57BL6NJ_P0069196 Cdc42 protein_coding protein_coding MGP_C57BL6NJ_T0010896.1 MGP_C57BL6NJ_G0008981.1 mouse_genomes_project 4 159070436 159070500 - Mir7023 miRNA miRNA MGP_C57BL6NJ_T0103148.1 MGP_C57BL6NJ_G0040942.1 mouse_genomes_project 4 99919929 99920108 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066191.1 MGP_C57BL6NJ_G0028716.1 mouse_genomes_project 4 53496464 53497409 + MGP_C57BL6NJ_P0066191 Olfr270 protein_coding protein_coding MGP_C57BL6NJ_T0066192.1 MGP_C57BL6NJ_G0028716.1 mouse_genomes_project 4 53496470 53497409 + MGP_C57BL6NJ_P0066192 Olfr270 protein_coding protein_coding MGP_C57BL6NJ_T0068860.1 MGP_C57BL6NJ_G0029327.1 mouse_genomes_project 4 140821939 140834177 - MGP_C57BL6NJ_P0068860 Pigv protein_coding protein_coding MGP_C57BL6NJ_T0068861.1 MGP_C57BL6NJ_G0029327.1 mouse_genomes_project 4 140823806 140834177 - MGP_C57BL6NJ_P0068861 Pigv protein_coding protein_coding MGP_C57BL6NJ_T0068862.1 MGP_C57BL6NJ_G0029327.1 mouse_genomes_project 4 140830286 140834177 - Pigv protein_coding processed_transcript MGP_C57BL6NJ_T0101698.1 MGP_C57BL6NJ_G0039744.1 mouse_genomes_project 4 124707120 124707245 + Gm24352 snoRNA snoRNA MGP_C57BL6NJ_T0101716.1 MGP_C57BL6NJ_G0039762.1 mouse_genomes_project 4 139348222 139348427 - Snora73a snoRNA snoRNA MGP_C57BL6NJ_T0068077.1 MGP_C57BL6NJ_G0029154.1 mouse_genomes_project 4 129206379 129207467 + MGP_C57BL6NJ_P0068077 Mycl protein_coding protein_coding MGP_C57BL6NJ_T0068078.1 MGP_C57BL6NJ_G0029154.1 mouse_genomes_project 4 129206671 129213209 + MGP_C57BL6NJ_P0068078 Mycl protein_coding protein_coding MGP_C57BL6NJ_T0068079.1 MGP_C57BL6NJ_G0029154.1 mouse_genomes_project 4 129206826 129213209 + MGP_C57BL6NJ_P0068079 Mycl protein_coding protein_coding MGP_C57BL6NJ_T0068080.1 MGP_C57BL6NJ_G0029154.1 mouse_genomes_project 4 129209603 129211191 + Mycl protein_coding processed_transcript MGP_C57BL6NJ_T0068081.1 MGP_C57BL6NJ_G0029154.1 mouse_genomes_project 4 129210062 129211241 + Mycl protein_coding processed_transcript MGP_C57BL6NJ_T0068180.1 MGP_C57BL6NJ_G0029181.1 mouse_genomes_project 4 131277672 131284605 - MGP_C57BL6NJ_P0068180 Maneal protein_coding protein_coding MGP_C57BL6NJ_T0067898.1 MGP_C57BL6NJ_G0029110.1 mouse_genomes_project 4 124688569 124695904 + MGP_C57BL6NJ_P0067898 Lao1 protein_coding protein_coding MGP_C57BL6NJ_T0067899.1 MGP_C57BL6NJ_G0029110.1 mouse_genomes_project 4 124692366 124695075 + Lao1 protein_coding processed_transcript MGP_C57BL6NJ_T0008204.1 MGP_C57BL6NJ_G0006697.1 mouse_genomes_project 4 162489461 162492437 + Gm833 lincRNA lincRNA MGP_C57BL6NJ_T0103128.1 MGP_C57BL6NJ_G0040922.1 mouse_genomes_project 4 42016243 42018229 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103146.1 MGP_C57BL6NJ_G0040940.1 mouse_genomes_project 4 91982599 91983144 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0066775.1 MGP_C57BL6NJ_G0028867.1 mouse_genomes_project 4 96930259 96937574 - MGP_C57BL6NJ_P0066775 Tusc1 protein_coding protein_coding MGP_C57BL6NJ_T0008022.1 MGP_C57BL6NJ_G0006557.1 mouse_genomes_project 4 54769645 54770143 - lincRNA lincRNA MGP_C57BL6NJ_T0004610.1 MGP_C57BL6NJ_G0004010.1 mouse_genomes_project 4 44862105 44865825 + 1700055D18Rik antisense antisense MGP_C57BL6NJ_T0004611.1 MGP_C57BL6NJ_G0004010.1 mouse_genomes_project 4 44863248 44864818 + 1700055D18Rik antisense antisense MGP_C57BL6NJ_T0014873.1 MGP_C57BL6NJ_G0012918.1 mouse_genomes_project 4 40544888 40545847 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014961.1 MGP_C57BL6NJ_G0013006.1 mouse_genomes_project 4 75379499 75380362 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067970.1 MGP_C57BL6NJ_G0029123.1 mouse_genomes_project 4 125195863 125226915 + MGP_C57BL6NJ_P0067970 Zmynd12 protein_coding protein_coding MGP_C57BL6NJ_T0067971.1 MGP_C57BL6NJ_G0029123.1 mouse_genomes_project 4 125195921 125223248 + Zmynd12 protein_coding processed_transcript MGP_C57BL6NJ_T0067972.1 MGP_C57BL6NJ_G0029123.1 mouse_genomes_project 4 125217778 125243380 + Zmynd12 protein_coding processed_transcript MGP_C57BL6NJ_T0066139.1 MGP_C57BL6NJ_G0028697.1 mouse_genomes_project 4 48803892 48816184 + MGP_C57BL6NJ_P0066139 Murc protein_coding protein_coding MGP_C57BL6NJ_T0018548.1 MGP_C57BL6NJ_G0015962.1 mouse_genomes_project 4 122742471 122742920 - 1700012C08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0014790.1 MGP_C57BL6NJ_G0012835.1 mouse_genomes_project 4 16930490 16931338 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066331.1 MGP_C57BL6NJ_G0028752.1 mouse_genomes_project 4 59909378 59954922 + MGP_C57BL6NJ_P0066331 Gm20503 protein_coding protein_coding MGP_C57BL6NJ_T0069380.1 MGP_C57BL6NJ_G0029444.1 mouse_genomes_project 4 147502309 147564055 + MGP_C57BL6NJ_P0069380 Gm21969 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0014919.1 MGP_C57BL6NJ_G0012964.1 mouse_genomes_project 4 55733180 55733541 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004654.1 MGP_C57BL6NJ_G0004042.1 mouse_genomes_project 4 111567629 111572194 - Gm12786 antisense antisense MGP_C57BL6NJ_T0066661.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074711 89110402 + Adamtsl1 protein_coding retained_intron MGP_C57BL6NJ_T0066662.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074711 89459226 + MGP_C57BL6NJ_P0066662 Adamtsl1 protein_coding protein_coding MGP_C57BL6NJ_T0066663.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074719 89279633 + MGP_C57BL6NJ_P0066663 Adamtsl1 protein_coding protein_coding MGP_C57BL6NJ_T0066664.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074724 89459229 + MGP_C57BL6NJ_P0066664 Adamtsl1 protein_coding protein_coding MGP_C57BL6NJ_T0066665.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074771 89224836 + MGP_C57BL6NJ_P0066665 Adamtsl1 protein_coding protein_coding MGP_C57BL6NJ_T0066666.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89074816 89260313 + Adamtsl1 protein_coding retained_intron MGP_C57BL6NJ_T0066667.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89110239 89134101 + Adamtsl1 protein_coding retained_intron MGP_C57BL6NJ_T0066668.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89224457 89274803 + MGP_C57BL6NJ_P0066668 Adamtsl1 protein_coding protein_coding MGP_C57BL6NJ_T0066669.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89303901 89304515 + Adamtsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0066670.1 MGP_C57BL6NJ_G0028829.1 mouse_genomes_project 4 89304178 89459226 + Adamtsl1 protein_coding retained_intron MGP_C57BL6NJ_T0008066.1 MGP_C57BL6NJ_G0006594.1 mouse_genomes_project 4 95119555 95124385 + Gm12670 lincRNA lincRNA MGP_C57BL6NJ_T0004692.1 MGP_C57BL6NJ_G0004070.1 mouse_genomes_project 4 130924733 131063716 - Gm27247 antisense antisense MGP_C57BL6NJ_T0101704.1 MGP_C57BL6NJ_G0039750.1 mouse_genomes_project 4 133457277 133457410 - Gm25604 snoRNA snoRNA MGP_C57BL6NJ_T0069573.1 MGP_C57BL6NJ_G0029491.1 mouse_genomes_project 4 151513476 151549400 - MGP_C57BL6NJ_P0069573 Pdpn protein_coding protein_coding MGP_C57BL6NJ_T0069574.1 MGP_C57BL6NJ_G0029491.1 mouse_genomes_project 4 151515874 151549299 - MGP_C57BL6NJ_P0069574 Pdpn protein_coding protein_coding MGP_C57BL6NJ_T0065599.1 MGP_C57BL6NJ_G0028582.1 mouse_genomes_project 4 41186069 41193619 - MGP_C57BL6NJ_P0065599 Arid3c protein_coding protein_coding MGP_C57BL6NJ_T0065600.1 MGP_C57BL6NJ_G0028582.1 mouse_genomes_project 4 41186372 41192520 - MGP_C57BL6NJ_P0065600 Arid3c protein_coding protein_coding MGP_C57BL6NJ_T0065601.1 MGP_C57BL6NJ_G0028582.1 mouse_genomes_project 4 41186372 41192520 - MGP_C57BL6NJ_P0065601 Arid3c protein_coding protein_coding MGP_C57BL6NJ_T0065602.1 MGP_C57BL6NJ_G0028582.1 mouse_genomes_project 4 41192159 41193619 - MGP_C57BL6NJ_P0065602 Arid3c protein_coding protein_coding MGP_C57BL6NJ_T0067067.1 MGP_C57BL6NJ_G0028933.1 mouse_genomes_project 4 109226229 109267312 - C8a protein_coding processed_transcript MGP_C57BL6NJ_T0067068.1 MGP_C57BL6NJ_G0028933.1 mouse_genomes_project 4 109226229 109289454 - MGP_C57BL6NJ_P0067068 C8a protein_coding protein_coding MGP_C57BL6NJ_T0067069.1 MGP_C57BL6NJ_G0028933.1 mouse_genomes_project 4 109226229 109289451 - MGP_C57BL6NJ_P0067069 C8a protein_coding protein_coding MGP_C57BL6NJ_T0067070.1 MGP_C57BL6NJ_G0028933.1 mouse_genomes_project 4 109226233 109289439 - MGP_C57BL6NJ_P0067070 C8a protein_coding protein_coding MGP_C57BL6NJ_T0067071.1 MGP_C57BL6NJ_G0028933.1 mouse_genomes_project 4 109226437 109289412 - MGP_C57BL6NJ_P0067071 C8a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0067554.1 MGP_C57BL6NJ_G0029034.1 mouse_genomes_project 4 121253166 121256722 + MGP_C57BL6NJ_P0067554 Kncn protein_coding protein_coding MGP_C57BL6NJ_T0067555.1 MGP_C57BL6NJ_G0029034.1 mouse_genomes_project 4 121254639 121258284 + Kncn protein_coding processed_transcript MGP_C57BL6NJ_T0066744.1 MGP_C57BL6NJ_G0028853.1 mouse_genomes_project 4 92108537 92109584 + MGP_C57BL6NJ_P0066744 protein_coding protein_coding MGP_C57BL6NJ_T0014756.1 MGP_C57BL6NJ_G0012801.1 mouse_genomes_project 4 8192357 8192639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0067872.1 MGP_C57BL6NJ_G0029095.1 mouse_genomes_project 4 124162749 124165537 - MGP_C57BL6NJ_P0067872 Tmem125 protein_coding protein_coding MGP_C57BL6NJ_T0067873.1 MGP_C57BL6NJ_G0029095.1 mouse_genomes_project 4 124163667 124165853 - MGP_C57BL6NJ_P0067873 Tmem125 protein_coding protein_coding MGP_C57BL6NJ_T0067874.1 MGP_C57BL6NJ_G0029095.1 mouse_genomes_project 4 124163825 124164771 - MGP_C57BL6NJ_P0067874 Tmem125 protein_coding protein_coding MGP_C57BL6NJ_T0067875.1 MGP_C57BL6NJ_G0029095.1 mouse_genomes_project 4 124163875 124165098 - MGP_C57BL6NJ_P0067875 Tmem125 protein_coding protein_coding MGP_C57BL6NJ_T0067876.1 MGP_C57BL6NJ_G0029095.1 mouse_genomes_project 4 124164410 124165058 - Tmem125 protein_coding processed_transcript MGP_C57BL6NJ_T0099267.1 MGP_C57BL6NJ_G0037331.1 mouse_genomes_project 4 89621282 89621413 - Scarna8 scaRNA scaRNA MGP_C57BL6NJ_T0014907.1 MGP_C57BL6NJ_G0012952.1 mouse_genomes_project 4 52906730 52906988 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066027.1 MGP_C57BL6NJ_G0028670.1 mouse_genomes_project 4 45875399 45952304 + MGP_C57BL6NJ_P0066027 Tdrd7 protein_coding protein_coding MGP_C57BL6NJ_T0066028.1 MGP_C57BL6NJ_G0028670.1 mouse_genomes_project 4 45882298 45952304 + MGP_C57BL6NJ_P0066028 Tdrd7 protein_coding protein_coding MGP_C57BL6NJ_T0066029.1 MGP_C57BL6NJ_G0028670.1 mouse_genomes_project 4 45882899 45897722 + Tdrd7 protein_coding processed_transcript MGP_C57BL6NJ_T0066030.1 MGP_C57BL6NJ_G0028670.1 mouse_genomes_project 4 45900262 45915692 + Tdrd7 protein_coding processed_transcript MGP_C57BL6NJ_T0066031.1 MGP_C57BL6NJ_G0028670.1 mouse_genomes_project 4 45939101 45952304 + Tdrd7 protein_coding processed_transcript MGP_C57BL6NJ_T0008187.1 MGP_C57BL6NJ_G0006680.1 mouse_genomes_project 4 148399068 148406346 + Gm13021 lincRNA lincRNA MGP_C57BL6NJ_T0014974.1 MGP_C57BL6NJ_G0013019.1 mouse_genomes_project 4 79007724 79010181 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010854.1 MGP_C57BL6NJ_G0008939.1 mouse_genomes_project 4 123125657 123125731 + Gm25559 miRNA miRNA MGP_C57BL6NJ_T0010811.1 MGP_C57BL6NJ_G0008896.1 mouse_genomes_project 4 9049069 9049133 + Gm25002 miRNA miRNA MGP_C57BL6NJ_T0008033.1 MGP_C57BL6NJ_G0006567.1 mouse_genomes_project 4 58152600 58156959 - 1700042G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008034.1 MGP_C57BL6NJ_G0006567.1 mouse_genomes_project 4 58152924 58156978 - 1700042G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008035.1 MGP_C57BL6NJ_G0006567.1 mouse_genomes_project 4 58153026 58156938 - 1700042G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0018498.1 MGP_C57BL6NJ_G0015928.1 mouse_genomes_project 4 16002344 16545401 + processed_transcript processed_transcript MGP_C57BL6NJ_T0066409.1 MGP_C57BL6NJ_G0028776.1 mouse_genomes_project 4 63599387 63602656 - MGP_C57BL6NJ_P0066409 Hdhd3 protein_coding protein_coding MGP_C57BL6NJ_T0066410.1 MGP_C57BL6NJ_G0028776.1 mouse_genomes_project 4 63600322 63603847 - Hdhd3 protein_coding processed_transcript MGP_C57BL6NJ_T0103152.1 MGP_C57BL6NJ_G0040946.1 mouse_genomes_project 4 106063642 106063915 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0069600.1 MGP_C57BL6NJ_G0029510.1 mouse_genomes_project 4 152468543 152471333 + protein_coding processed_transcript MGP_C57BL6NJ_T0069602.1 MGP_C57BL6NJ_G0029510.1 mouse_genomes_project 4 152468554 152472940 + MGP_C57BL6NJ_P0069602 protein_coding protein_coding MGP_C57BL6NJ_T0069603.1 MGP_C57BL6NJ_G0029510.1 mouse_genomes_project 4 152468557 152471558 + protein_coding processed_transcript MGP_C57BL6NJ_T0100349.1 MGP_C57BL6NJ_G0038395.1 mouse_genomes_project 4 45430018 45430125 + Gm22055 snRNA snRNA MGP_C57BL6NJ_T0070272.1 MGP_C57BL6NJ_G0029650.1 mouse_genomes_project 4 165682552 165685282 - MGP_C57BL6NJ_P0070272 Mmp23 protein_coding protein_coding MGP_C57BL6NJ_T0070273.1 MGP_C57BL6NJ_G0029650.1 mouse_genomes_project 4 165682554 165683923 - Mmp23 protein_coding retained_intron MGP_C57BL6NJ_T0070274.1 MGP_C57BL6NJ_G0029650.1 mouse_genomes_project 4 165684150 165685105 - Mmp23 protein_coding retained_intron MGP_C57BL6NJ_T0070275.1 MGP_C57BL6NJ_G0029650.1 mouse_genomes_project 4 165684167 165684790 - Mmp23 protein_coding retained_intron MGP_C57BL6NJ_T0069010.1 MGP_C57BL6NJ_G0029358.1 mouse_genomes_project 4 142123336 142134219 - Tmem57 protein_coding processed_transcript MGP_C57BL6NJ_T0069011.1 MGP_C57BL6NJ_G0029358.1 mouse_genomes_project 4 142123336 142178808 - MGP_C57BL6NJ_P0069011 Tmem57 protein_coding protein_coding MGP_C57BL6NJ_T0069012.1 MGP_C57BL6NJ_G0029358.1 mouse_genomes_project 4 142134199 142178612 - MGP_C57BL6NJ_P0069012 Tmem57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069013.1 MGP_C57BL6NJ_G0029358.1 mouse_genomes_project 4 142153381 142178726 - MGP_C57BL6NJ_P0069013 Tmem57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069014.1 MGP_C57BL6NJ_G0029358.1 mouse_genomes_project 4 142162181 142178780 - Tmem57 protein_coding retained_intron MGP_C57BL6NJ_T0014736.1 MGP_C57BL6NJ_G0012781.1 mouse_genomes_project 4 1643708 1644076 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007979.1 MGP_C57BL6NJ_G0006519.1 mouse_genomes_project 4 9100657 9110227 - Gm11840 lincRNA lincRNA MGP_C57BL6NJ_T0068599.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137108492 137121077 - MGP_C57BL6NJ_P0068599 Tinagl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068600.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137109597 137121077 - MGP_C57BL6NJ_P0068600 Tinagl1 protein_coding protein_coding MGP_C57BL6NJ_T0068601.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137109599 137110607 - Tinagl1 protein_coding retained_intron MGP_C57BL6NJ_T0068602.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137109599 137121067 - MGP_C57BL6NJ_P0068602 Tinagl1 protein_coding protein_coding MGP_C57BL6NJ_T0068603.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137109714 137121397 - MGP_C57BL6NJ_P0068603 Tinagl1 protein_coding protein_coding MGP_C57BL6NJ_T0068604.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137110972 137115794 - Tinagl1 protein_coding retained_intron MGP_C57BL6NJ_T0068605.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137115422 137120966 - MGP_C57BL6NJ_P0068605 Tinagl1 protein_coding protein_coding MGP_C57BL6NJ_T0068606.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137117681 137121067 - Tinagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0068607.1 MGP_C57BL6NJ_G0029269.1 mouse_genomes_project 4 137119984 137121095 - Tinagl1 protein_coding retained_intron MGP_C57BL6NJ_T0069542.1 MGP_C57BL6NJ_G0029484.1 mouse_genomes_project 4 149957105 149961332 - Cela2a protein_coding retained_intron MGP_C57BL6NJ_T0069543.1 MGP_C57BL6NJ_G0029484.1 mouse_genomes_project 4 149957105 149968290 - MGP_C57BL6NJ_P0069543 Cela2a protein_coding protein_coding MGP_C57BL6NJ_T0069545.1 MGP_C57BL6NJ_G0029484.1 mouse_genomes_project 4 149967081 149968131 - Cela2a protein_coding retained_intron MGP_C57BL6NJ_T0101632.1 MGP_C57BL6NJ_G0039678.1 mouse_genomes_project 4 417633 417770 - Gm22781 snoRNA snoRNA MGP_C57BL6NJ_T0101642.1 MGP_C57BL6NJ_G0039688.1 mouse_genomes_project 4 19149037 19149122 + Gm25977 snoRNA snoRNA MGP_C57BL6NJ_T0015061.1 MGP_C57BL6NJ_G0013106.1 mouse_genomes_project 4 112265171 112265722 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066276.1 MGP_C57BL6NJ_G0028738.1 mouse_genomes_project 4 58235045 58532970 + MGP_C57BL6NJ_P0066276 Palm2 protein_coding protein_coding MGP_C57BL6NJ_T0066277.1 MGP_C57BL6NJ_G0028738.1 mouse_genomes_project 4 58375312 58532756 + MGP_C57BL6NJ_P0066277 Palm2 protein_coding protein_coding MGP_C57BL6NJ_T0066279.1 MGP_C57BL6NJ_G0028738.1 mouse_genomes_project 4 58375473 58531183 + MGP_C57BL6NJ_P0066279 Palm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0066282.1 MGP_C57BL6NJ_G0028738.1 mouse_genomes_project 4 58453855 58530443 + Palm2 protein_coding retained_intron MGP_C57BL6NJ_T0068617.1 MGP_C57BL6NJ_G0029274.1 mouse_genomes_project 4 137267486 137317424 - MGP_C57BL6NJ_P0068617 Zcchc17 protein_coding protein_coding MGP_C57BL6NJ_T0068618.1 MGP_C57BL6NJ_G0029274.1 mouse_genomes_project 4 137268382 137270843 - Zcchc17 protein_coding processed_transcript MGP_C57BL6NJ_T0068619.1 MGP_C57BL6NJ_G0029274.1 mouse_genomes_project 4 137268798 137299038 - Zcchc17 protein_coding processed_transcript MGP_C57BL6NJ_T0068620.1 MGP_C57BL6NJ_G0029274.1 mouse_genomes_project 4 137291142 137292871 - Zcchc17 protein_coding processed_transcript MGP_C57BL6NJ_T0068621.1 MGP_C57BL6NJ_G0029274.1 mouse_genomes_project 4 137309648 137317397 - Zcchc17 protein_coding retained_intron MGP_C57BL6NJ_T0069194.1 MGP_C57BL6NJ_G0029402.1 mouse_genomes_project 4 144855200 144877344 + MGP_C57BL6NJ_P0069194 Wnt4 protein_coding protein_coding MGP_C57BL6NJ_T0004701.1 MGP_C57BL6NJ_G0004078.1 mouse_genomes_project 4 136358596 136380222 - Gm12979 antisense antisense MGP_C57BL6NJ_T0100414.1 MGP_C57BL6NJ_G0038460.1 mouse_genomes_project 4 159832594 159832704 + Gm23209 snRNA snRNA MGP_C57BL6NJ_T0068361.1 MGP_C57BL6NJ_G0029226.1 mouse_genomes_project 4 135001329 135002075 - MGP_C57BL6NJ_P0068361 Hmgb4 protein_coding protein_coding MGP_C57BL6NJ_T0100367.1 MGP_C57BL6NJ_G0038413.1 mouse_genomes_project 4 100730803 100730867 + Gm27521 snRNA snRNA MGP_C57BL6NJ_T0069576.1 MGP_C57BL6NJ_G0029493.1 mouse_genomes_project 4 151650819 151656531 + MGP_C57BL6NJ_P0069576 Pramel1 protein_coding protein_coding MGP_C57BL6NJ_T0008030.1 MGP_C57BL6NJ_G0006564.1 mouse_genomes_project 4 56674245 56698463 - Gm12519 lincRNA lincRNA MGP_C57BL6NJ_T0069036.1 MGP_C57BL6NJ_G0029364.1 mouse_genomes_project 4 142558560 142625909 - MGP_C57BL6NJ_P0069036 Clic4 protein_coding protein_coding MGP_C57BL6NJ_T0069037.1 MGP_C57BL6NJ_G0029364.1 mouse_genomes_project 4 142568129 142626134 - Clic4 protein_coding retained_intron MGP_C57BL6NJ_T0069900.1 MGP_C57BL6NJ_G0029585.1 mouse_genomes_project 4 160168635 160195356 - MGP_C57BL6NJ_P0069900 Slc45a1 protein_coding protein_coding MGP_C57BL6NJ_T0069901.1 MGP_C57BL6NJ_G0029585.1 mouse_genomes_project 4 160170110 160195279 - MGP_C57BL6NJ_P0069901 Slc45a1 protein_coding protein_coding MGP_C57BL6NJ_T0069902.1 MGP_C57BL6NJ_G0029585.1 mouse_genomes_project 4 160186542 160187343 - Slc45a1 protein_coding retained_intron MGP_C57BL6NJ_T0014868.1 MGP_C57BL6NJ_G0012913.1 mouse_genomes_project 4 39346267 39348154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101653.1 MGP_C57BL6NJ_G0039699.1 mouse_genomes_project 4 40597464 40597542 - Gm23090 snoRNA snoRNA MGP_C57BL6NJ_T0065033.1 MGP_C57BL6NJ_G0028442.1 mouse_genomes_project 4 726174 748379 - MGP_C57BL6NJ_P0065033 Sdr16c6 protein_coding protein_coding MGP_C57BL6NJ_T0065034.1 MGP_C57BL6NJ_G0028442.1 mouse_genomes_project 4 726176 748970 - MGP_C57BL6NJ_P0065034 Sdr16c6 protein_coding protein_coding MGP_C57BL6NJ_T0099097.1 MGP_C57BL6NJ_G0037161.1 mouse_genomes_project 4 9998294 9998401 + n-R5s182 rRNA rRNA MGP_C57BL6NJ_T0018507.1 MGP_C57BL6NJ_G0015934.1 mouse_genomes_project 4 34089340 34099516 + Gm12367 processed_transcript processed_transcript MGP_C57BL6NJ_T0018508.1 MGP_C57BL6NJ_G0015934.1 mouse_genomes_project 4 34089358 34099614 + Gm12367 processed_transcript processed_transcript MGP_C57BL6NJ_T0018509.1 MGP_C57BL6NJ_G0015934.1 mouse_genomes_project 4 34089375 34125777 + Gm12367 processed_transcript processed_transcript MGP_C57BL6NJ_T0065930.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44326581 44525409 - MGP_C57BL6NJ_P0065930 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065931.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44332969 44525340 - MGP_C57BL6NJ_P0065931 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065932.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44332969 44525340 - MGP_C57BL6NJ_P0065932 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065933.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44332969 44525340 - MGP_C57BL6NJ_P0065933 Pax5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065934.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44332969 44525340 - MGP_C57BL6NJ_P0065934 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065935.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44332969 44525340 - MGP_C57BL6NJ_P0065935 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065936.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065936 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065937.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065937 Pax5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0065938.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065938 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065939.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065939 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065940.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065940 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065941.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065941 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065942.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333321 44525330 - MGP_C57BL6NJ_P0065942 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065943.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44333328 44457712 - MGP_C57BL6NJ_P0065943 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065944.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44378102 44498755 - Pax5 protein_coding processed_transcript MGP_C57BL6NJ_T0065945.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44494381 44518928 - MGP_C57BL6NJ_P0065945 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0065946.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44494395 44518335 - Pax5 protein_coding processed_transcript MGP_C57BL6NJ_T0065947.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44494395 44518335 - Pax5 protein_coding processed_transcript MGP_C57BL6NJ_T0065948.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44494395 44518335 - Pax5 protein_coding processed_transcript MGP_C57BL6NJ_T0065949.1 MGP_C57BL6NJ_G0028653.1 mouse_genomes_project 4 44494395 44518335 - MGP_C57BL6NJ_P0065949 Pax5 protein_coding protein_coding MGP_C57BL6NJ_T0066732.1 MGP_C57BL6NJ_G0028845.1 mouse_genomes_project 4 91868013 91868810 - MGP_C57BL6NJ_P0066732 Ifna12 protein_coding protein_coding MGP_C57BL6NJ_T0007993.1 MGP_C57BL6NJ_G0006532.1 mouse_genomes_project 4 22445195 22445716 - Gm27243 lincRNA lincRNA MGP_C57BL6NJ_T0004749.1 MGP_C57BL6NJ_G0004115.1 mouse_genomes_project 4 158220601 158221415 - Gm15969 antisense antisense MGP_C57BL6NJ_T0068143.1 MGP_C57BL6NJ_G0029170.1 mouse_genomes_project 4 130244382 130267196 + MGP_C57BL6NJ_P0068143 Rragc protein_coding protein_coding MGP_C57BL6NJ_T0068144.1 MGP_C57BL6NJ_G0029170.1 mouse_genomes_project 4 130244410 130267192 + MGP_C57BL6NJ_P0068144 Rragc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0068146.1 MGP_C57BL6NJ_G0029170.1 mouse_genomes_project 4 130247827 130249732 + Rragc protein_coding processed_transcript MGP_C57BL6NJ_T0068147.1 MGP_C57BL6NJ_G0029170.1 mouse_genomes_project 4 130249647 130258711 + Rragc protein_coding retained_intron MGP_C57BL6NJ_T0068148.1 MGP_C57BL6NJ_G0029170.1 mouse_genomes_project 4 130250022 130265745 + Rragc protein_coding processed_transcript MGP_C57BL6NJ_T0014959.1 MGP_C57BL6NJ_G0013004.1 mouse_genomes_project 4 74861535 74872898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101676.1 MGP_C57BL6NJ_G0039722.1 mouse_genomes_project 4 75472798 75472931 - Gm24170 snoRNA snoRNA MGP_C57BL6NJ_T0065646.1 MGP_C57BL6NJ_G0028598.1 mouse_genomes_project 4 42085980 42090982 - MGP_C57BL6NJ_P0065646 protein_coding protein_coding MGP_C57BL6NJ_T0008086.1 MGP_C57BL6NJ_G0006611.1 mouse_genomes_project 4 107542113 107545166 + Gm44037 lincRNA lincRNA MGP_C57BL6NJ_T0069530.1 MGP_C57BL6NJ_G0029479.1 mouse_genomes_project 4 149807420 149854250 - MGP_C57BL6NJ_P0069530 protein_coding protein_coding MGP_C57BL6NJ_T0069531.1 MGP_C57BL6NJ_G0029479.1 mouse_genomes_project 4 149813434 149854250 - MGP_C57BL6NJ_P0069531 protein_coding protein_coding MGP_C57BL6NJ_T0099450.1 MGP_C57BL6NJ_G0037507.1 mouse_genomes_project 4 137586059 137589876 + Gm12971 sense_intronic sense_intronic MGP_C57BL6NJ_T0067814.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123477125 123483302 - Ipo13 protein_coding processed_transcript MGP_C57BL6NJ_T0067815.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123477125 123497181 - MGP_C57BL6NJ_P0067815 Ipo13 protein_coding protein_coding MGP_C57BL6NJ_T0067816.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123477266 123477754 - Ipo13 protein_coding processed_transcript MGP_C57BL6NJ_T0067817.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123477531 123478513 - Ipo13 protein_coding processed_transcript MGP_C57BL6NJ_T0067818.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123477979 123478532 - Ipo13 protein_coding processed_transcript MGP_C57BL6NJ_T0067819.1 MGP_C57BL6NJ_G0029083.1 mouse_genomes_project 4 123483594 123486507 - Ipo13 protein_coding processed_transcript MGP_C57BL6NJ_T0065693.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42614872 42623021 - Fancg protein_coding retained_intron MGP_C57BL6NJ_T0065694.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42614872 42622888 - MGP_C57BL6NJ_P0065694 Fancg protein_coding protein_coding MGP_C57BL6NJ_T0065695.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42615451 42616462 - Fancg protein_coding retained_intron MGP_C57BL6NJ_T0065696.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42615540 42618995 - Fancg protein_coding processed_transcript MGP_C57BL6NJ_T0065697.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42615789 42619040 - Fancg protein_coding processed_transcript MGP_C57BL6NJ_T0065698.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42616442 42619308 - Fancg protein_coding processed_transcript MGP_C57BL6NJ_T0065699.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42617749 42621682 - Fancg protein_coding processed_transcript MGP_C57BL6NJ_T0065700.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42621595 42622703 - Fancg protein_coding retained_intron MGP_C57BL6NJ_T0065701.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42621686 42622755 - Fancg protein_coding retained_intron MGP_C57BL6NJ_T0065702.1 MGP_C57BL6NJ_G0028614.1 mouse_genomes_project 4 42622575 42623039 - Fancg protein_coding processed_transcript MGP_C57BL6NJ_T0001555.1 MGP_C57BL6NJ_G0001455.1 mouse_genomes_project 4 130639429 130640732 - TEC TEC MGP_C57BL6NJ_T0102254.1 MGP_C57BL6NJ_G0040244.1 mouse_genomes_project 4 138832565 138833087 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0015031.1 MGP_C57BL6NJ_G0013076.1 mouse_genomes_project 4 102600287 102602683 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0014735.1 MGP_C57BL6NJ_G0012780.1 mouse_genomes_project 4 1198498 1199014 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0069989.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161814764 161851535 - MGP_C57BL6NJ_P0069989 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069990.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161814769 161851699 - MGP_C57BL6NJ_P0069990 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069991.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815290 161825220 - MGP_C57BL6NJ_P0069991 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069992.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815301 161851550 - MGP_C57BL6NJ_P0069992 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069993.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815303 161828160 - MGP_C57BL6NJ_P0069993 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069994.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815315 161828632 - Espn protein_coding processed_transcript MGP_C57BL6NJ_T0069995.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832620 - MGP_C57BL6NJ_P0069995 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069996.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832577 - MGP_C57BL6NJ_P0069996 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069997.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832620 - MGP_C57BL6NJ_P0069997 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069998.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832577 - MGP_C57BL6NJ_P0069998 Espn protein_coding protein_coding MGP_C57BL6NJ_T0069999.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832577 - MGP_C57BL6NJ_P0069999 Espn protein_coding protein_coding MGP_C57BL6NJ_T0070000.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832577 - MGP_C57BL6NJ_P0070000 Espn protein_coding protein_coding MGP_C57BL6NJ_T0070001.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832620 - MGP_C57BL6NJ_P0070001 Espn protein_coding protein_coding MGP_C57BL6NJ_T0070002.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815554 161832620 - MGP_C57BL6NJ_P0070002 Espn protein_coding protein_coding MGP_C57BL6NJ_T0070003.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161815565 161828136 - Espn protein_coding processed_transcript MGP_C57BL6NJ_T0070004.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161817332 161828161 - Espn protein_coding processed_transcript MGP_C57BL6NJ_T0070005.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161818147 161847667 - MGP_C57BL6NJ_P0070005 Espn protein_coding protein_coding MGP_C57BL6NJ_T0070006.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161824088 161828152 - Espn protein_coding processed_transcript MGP_C57BL6NJ_T0070007.1 MGP_C57BL6NJ_G0029603.1 mouse_genomes_project 4 161824436 161827525 - Espn protein_coding processed_transcript MGP_C57BL6NJ_T0015215.1 MGP_C57BL6NJ_G0013260.1 mouse_genomes_project 4 158884891 158885267 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0068811.1 MGP_C57BL6NJ_G0029312.1 mouse_genomes_project 4 140317491 140327119 + Cd164l2 protein_coding processed_transcript MGP_C57BL6NJ_T0068812.1 MGP_C57BL6NJ_G0029312.1 mouse_genomes_project 4 140326158 140329904 + MGP_C57BL6NJ_P0068812 Cd164l2 protein_coding protein_coding MGP_C57BL6NJ_T0068813.1 MGP_C57BL6NJ_G0029312.1 mouse_genomes_project 4 140326796 140329904 + Cd164l2 protein_coding processed_transcript MGP_C57BL6NJ_T0068814.1 MGP_C57BL6NJ_G0029312.1 mouse_genomes_project 4 140326882 140329591 + Cd164l2 protein_coding retained_intron MGP_C57BL6NJ_T0008063.1 MGP_C57BL6NJ_G0006592.1 mouse_genomes_project 4 92548914 92595622 - lincRNA lincRNA MGP_C57BL6NJ_T0008064.1 MGP_C57BL6NJ_G0006592.1 mouse_genomes_project 4 92548932 92596438 - lincRNA lincRNA MGP_C57BL6NJ_T0068331.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133662923 133676916 - MGP_C57BL6NJ_P0068331 Zmym1 protein_coding protein_coding MGP_C57BL6NJ_T0068332.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133663422 133674758 - MGP_C57BL6NJ_P0068332 Zmym1 protein_coding protein_coding MGP_C57BL6NJ_T0068333.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133663471 133676824 - Zmym1 protein_coding processed_transcript MGP_C57BL6NJ_T0068334.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133663471 133676888 - MGP_C57BL6NJ_P0068334 Zmym1 protein_coding protein_coding MGP_C57BL6NJ_T0068335.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133664494 133674653 - Zmym1 protein_coding processed_transcript MGP_C57BL6NJ_T0068336.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133670117 133673345 - Zmym1 protein_coding processed_transcript MGP_C57BL6NJ_T0068337.1 MGP_C57BL6NJ_G0029215.1 mouse_genomes_project 4 133670156 133676850 - MGP_C57BL6NJ_P0068337 Zmym1 protein_coding protein_coding MGP_C57BL6NJ_T0065808.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43186108 43196332 + MGP_C57BL6NJ_P0065808 Car9 protein_coding protein_coding MGP_C57BL6NJ_T0065809.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43186166 43196332 + Car9 protein_coding processed_transcript MGP_C57BL6NJ_T0065810.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43186454 43195661 + MGP_C57BL6NJ_P0065810 Car9 protein_coding protein_coding MGP_C57BL6NJ_T0065811.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43187019 43188117 + Car9 protein_coding processed_transcript MGP_C57BL6NJ_T0065812.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43187685 43188178 + Car9 protein_coding processed_transcript MGP_C57BL6NJ_T0065813.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43188079 43195058 + Car9 protein_coding processed_transcript MGP_C57BL6NJ_T0065814.1 MGP_C57BL6NJ_G0028627.1 mouse_genomes_project 4 43194734 43195545 + Car9 protein_coding processed_transcript MGP_C57BL6NJ_T0008090.1 MGP_C57BL6NJ_G0006614.1 mouse_genomes_project 4 110579422 110595762 - Gm12729 lincRNA lincRNA MGP_C57BL6NJ_T0066387.1 MGP_C57BL6NJ_G0028770.1 mouse_genomes_project 4 63444874 63479181 + MGP_C57BL6NJ_P0066387 Slc31a1 protein_coding protein_coding MGP_C57BL6NJ_T0066389.1 MGP_C57BL6NJ_G0028770.1 mouse_genomes_project 4 63472908 63479181 + MGP_C57BL6NJ_P0066389 Slc31a1 protein_coding protein_coding MGP_C57BL6NJ_T0068002.1 MGP_C57BL6NJ_G0029131.1 mouse_genomes_project 4 126094070 126114341 - MGP_C57BL6NJ_P0068002 Foxo6 protein_coding protein_coding MGP_C57BL6NJ_T0068677.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855569 138869498 - MGP_C57BL6NJ_P0068677 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068678.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138869535 - Epb41 protein_coding processed_transcript MGP_C57BL6NJ_T0068679.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 139014442 - Epb41 protein_coding processed_transcript MGP_C57BL6NJ_T0068680.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138942084 - MGP_C57BL6NJ_P0068680 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068681.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138938441 - MGP_C57BL6NJ_P0068681 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068682.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 139014413 - MGP_C57BL6NJ_P0068682 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068683.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138942085 - MGP_C57BL6NJ_P0068683 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068684.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138899995 - MGP_C57BL6NJ_P0068684 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068685.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 138900026 - MGP_C57BL6NJ_P0068685 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068686.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855571 139014413 - MGP_C57BL6NJ_P0068686 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068687.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855587 138983808 - MGP_C57BL6NJ_P0068687 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068688.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855587 139009605 - MGP_C57BL6NJ_P0068688 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068689.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138855587 138983808 - MGP_C57BL6NJ_P0068689 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068690.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138856287 139009605 - Epb41 protein_coding processed_transcript MGP_C57BL6NJ_T0068691.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138858668 138942078 - MGP_C57BL6NJ_P0068691 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068692.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138889771 138983821 - MGP_C57BL6NJ_P0068692 Epb41 protein_coding protein_coding MGP_C57BL6NJ_T0068693.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138922853 138934951 - Epb41 protein_coding processed_transcript MGP_C57BL6NJ_T0068694.1 MGP_C57BL6NJ_G0029285.1 mouse_genomes_project 4 138938422 139014385 - Epb41 protein_coding processed_transcript MGP_C57BL6NJ_T0068449.1 MGP_C57BL6NJ_G0029242.1 mouse_genomes_project 4 136134060 136154165 + Sync protein_coding retained_intron MGP_C57BL6NJ_T0068450.1 MGP_C57BL6NJ_G0029242.1 mouse_genomes_project 4 136134060 136155361 + MGP_C57BL6NJ_P0068450 Sync protein_coding protein_coding MGP_C57BL6NJ_T0018528.1 MGP_C57BL6NJ_G0015948.1 mouse_genomes_project 4 92735949 92782462 + Gm12610 processed_transcript processed_transcript MGP_C57BL6NJ_T0068021.1 MGP_C57BL6NJ_G0029135.1 mouse_genomes_project 4 126447812 126481358 + MGP_C57BL6NJ_P0068021 Gm8439 protein_coding protein_coding MGP_C57BL6NJ_T0101655.1 MGP_C57BL6NJ_G0039701.1 mouse_genomes_project 4 44211936 44212063 - Gm24376 snoRNA snoRNA MGP_C57BL6NJ_T0015197.1 MGP_C57BL6NJ_G0013242.1 mouse_genomes_project 4 154071953 154072500 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101640.1 MGP_C57BL6NJ_G0039686.1 mouse_genomes_project 4 11506908 11507035 + Gm24908 snoRNA snoRNA MGP_C57BL6NJ_T0101702.1 MGP_C57BL6NJ_G0039748.1 mouse_genomes_project 4 129541782 129541913 + Gm22154 snoRNA snoRNA MGP_C57BL6NJ_T0011849.1 MGP_C57BL6NJ_G0009934.1 mouse_genomes_project 4 161909444 161909780 - Gm27500 misc_RNA misc_RNA MGP_C57BL6NJ_T0065256.1 MGP_C57BL6NJ_G0028500.1 mouse_genomes_project 4 17834525 18589510 - MGP_C57BL6NJ_P0065256 Nkain3 protein_coding protein_coding MGP_C57BL6NJ_T0065257.1 MGP_C57BL6NJ_G0028500.1 mouse_genomes_project 4 17978348 18589797 - MGP_C57BL6NJ_P0065257 Nkain3 protein_coding protein_coding MGP_C57BL6NJ_T0101718.1 MGP_C57BL6NJ_G0039764.1 mouse_genomes_project 4 144597712 144597841 + Gm23834 snoRNA snoRNA MGP_C57BL6NJ_T0014789.1 MGP_C57BL6NJ_G0012834.1 mouse_genomes_project 4 16619186 16620124 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008023.1 MGP_C57BL6NJ_G0006558.1 mouse_genomes_project 4 55267180 55267650 - Gm29067 lincRNA lincRNA MGP_C57BL6NJ_T0067904.1 MGP_C57BL6NJ_G0029112.1 mouse_genomes_project 4 124923744 124927915 - MGP_C57BL6NJ_P0067904 Zfp691 protein_coding protein_coding MGP_C57BL6NJ_T0067905.1 MGP_C57BL6NJ_G0029112.1 mouse_genomes_project 4 124923744 124928254 - MGP_C57BL6NJ_P0067905 Zfp691 protein_coding protein_coding MGP_C57BL6NJ_T0067906.1 MGP_C57BL6NJ_G0029112.1 mouse_genomes_project 4 124923747 124927915 - MGP_C57BL6NJ_P0067906 Zfp691 protein_coding protein_coding MGP_C57BL6NJ_T0067907.1 MGP_C57BL6NJ_G0029112.1 mouse_genomes_project 4 124925054 124927915 - MGP_C57BL6NJ_P0067907 Zfp691 protein_coding protein_coding MGP_C57BL6NJ_T0069137.1 MGP_C57BL6NJ_G0029386.1 mouse_genomes_project 4 143656492 143706169 + MGP_C57BL6NJ_P0069137 Asap3 protein_coding protein_coding MGP_C57BL6NJ_T0007966.1 MGP_C57BL6NJ_G0006511.1 mouse_genomes_project 4 2237482 2244327 - Gm11782 lincRNA lincRNA MGP_C57BL6NJ_T0015159.1 MGP_C57BL6NJ_G0013204.1 mouse_genomes_project 4 142670368 142670558 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008186.1 MGP_C57BL6NJ_G0006679.1 mouse_genomes_project 4 148364058 148369515 + Gm13017 lincRNA lincRNA MGP_C57BL6NJ_T0065836.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43250900 43262536 - Gba2 protein_coding retained_intron MGP_C57BL6NJ_T0065837.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43250900 43262088 - Gba2 protein_coding retained_intron MGP_C57BL6NJ_T0065838.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43250900 43262872 - MGP_C57BL6NJ_P0065838 Gba2 protein_coding protein_coding MGP_C57BL6NJ_T0065839.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43250901 43262088 - Gba2 protein_coding retained_intron MGP_C57BL6NJ_T0065840.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43252366 43253615 - Gba2 protein_coding retained_intron MGP_C57BL6NJ_T0065841.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43254328 43258027 - Gba2 protein_coding processed_transcript MGP_C57BL6NJ_T0065842.1 MGP_C57BL6NJ_G0028631.1 mouse_genomes_project 4 43254734 43262635 - MGP_C57BL6NJ_P0065842 Gba2 protein_coding protein_coding MGP_C57BL6NJ_T0014986.1 MGP_C57BL6NJ_G0013031.1 mouse_genomes_project 4 84196288 84202078 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066261.1 MGP_C57BL6NJ_G0028735.1 mouse_genomes_project 4 57715250 57751320 - MGP_C57BL6NJ_P0066261 Frrs1l protein_coding protein_coding MGP_C57BL6NJ_T0066262.1 MGP_C57BL6NJ_G0028735.1 mouse_genomes_project 4 57717205 57751065 - MGP_C57BL6NJ_P0066262 Frrs1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0069384.1 MGP_C57BL6NJ_G0029446.1 mouse_genomes_project 4 147555106 147571647 + MGP_C57BL6NJ_P0069384 Tas1r2 protein_coding protein_coding MGP_C57BL6NJ_T0069385.1 MGP_C57BL6NJ_G0029446.1 mouse_genomes_project 4 147555117 147571222 + MGP_C57BL6NJ_P0069385 Tas1r2 protein_coding protein_coding MGP_C57BL6NJ_T0065983.1 MGP_C57BL6NJ_G0028660.1 mouse_genomes_project 4 45044842 45129570 + MGP_C57BL6NJ_P0065983 Frmpd1 protein_coding protein_coding MGP_C57BL6NJ_T0065984.1 MGP_C57BL6NJ_G0028660.1 mouse_genomes_project 4 45044873 45153799 + MGP_C57BL6NJ_P0065984 Frmpd1 protein_coding protein_coding MGP_C57BL6NJ_T0065985.1 MGP_C57BL6NJ_G0028660.1 mouse_genomes_project 4 45069166 45153799 + MGP_C57BL6NJ_P0065985 Frmpd1 protein_coding protein_coding MGP_C57BL6NJ_T0014788.1 MGP_C57BL6NJ_G0012833.1 mouse_genomes_project 4 16491789 16494936 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015013.1 MGP_C57BL6NJ_G0013058.1 mouse_genomes_project 4 95189139 95190471 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018512.1 MGP_C57BL6NJ_G0015937.1 mouse_genomes_project 4 45660177 45662024 - Gm12409 processed_transcript processed_transcript MGP_C57BL6NJ_T0066747.1 MGP_C57BL6NJ_G0028856.1 mouse_genomes_project 4 92124418 92124988 + MGP_C57BL6NJ_P0066747 Ifna5 protein_coding protein_coding MGP_C57BL6NJ_T0103135.1 MGP_C57BL6NJ_G0040929.1 mouse_genomes_project 4 53458389 53459341 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0014844.1 MGP_C57BL6NJ_G0012889.1 mouse_genomes_project 4 31744357 31744804 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0066187.1 MGP_C57BL6NJ_G0028714.1 mouse_genomes_project 4 53367505 53368564 - MGP_C57BL6NJ_P0066187 Olfr273 protein_coding protein_coding MGP_C57BL6NJ_T0066188.1 MGP_C57BL6NJ_G0028714.1 mouse_genomes_project 4 53367549 53370458 - MGP_C57BL6NJ_P0066188 Olfr273 protein_coding protein_coding MGP_C57BL6NJ_T0067485.1 MGP_C57BL6NJ_G0029016.1 mouse_genomes_project 4 120139320 120141912 - MGP_C57BL6NJ_P0067485 Foxd2 protein_coding protein_coding MGP_C57BL6NJ_T0068722.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139327489 139341271 - MGP_C57BL6NJ_P0068722 Rcc1 protein_coding protein_coding MGP_C57BL6NJ_T0068723.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139327493 139341229 - MGP_C57BL6NJ_P0068723 Rcc1 protein_coding protein_coding MGP_C57BL6NJ_T0068724.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139327493 139347085 - MGP_C57BL6NJ_P0068724 Rcc1 protein_coding protein_coding MGP_C57BL6NJ_T0068725.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139333179 139335456 - Rcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0068726.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139333346 139349053 - MGP_C57BL6NJ_P0068726 Rcc1 protein_coding protein_coding MGP_C57BL6NJ_T0068727.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139334238 139341225 - Rcc1 protein_coding retained_intron MGP_C57BL6NJ_T0068728.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139334484 139340881 - Rcc1 protein_coding retained_intron MGP_C57BL6NJ_T0068729.1 MGP_C57BL6NJ_G0029293.1 mouse_genomes_project 4 139335014 139341216 - Rcc1 protein_coding retained_intron MGP_C57BL6NJ_T0014748.1 MGP_C57BL6NJ_G0012793.1 mouse_genomes_project 4 6937791 6938714 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101648.1 MGP_C57BL6NJ_G0039694.1 mouse_genomes_project 4 36363253 36363374 + Gm22732 snoRNA snoRNA MGP_C57BL6NJ_T0065518.1 MGP_C57BL6NJ_G0028559.1 mouse_genomes_project 4 40143060 40192945 - MGP_C57BL6NJ_P0065518 B4galt1 protein_coding protein_coding MGP_C57BL6NJ_T0065519.1 MGP_C57BL6NJ_G0028559.1 mouse_genomes_project 4 40147611 40192945 - MGP_C57BL6NJ_P0065519 B4galt1 protein_coding protein_coding MGP_C57BL6NJ_T0010822.1 MGP_C57BL6NJ_G0008907.1 mouse_genomes_project 4 35691113 35691190 + Mir873b miRNA miRNA MGP_C57BL6NJ_T0069618.1 MGP_C57BL6NJ_G0029523.1 mouse_genomes_project 4 152993307 153002991 + MGP_C57BL6NJ_P0069618 Gm13177 protein_coding protein_coding MGP_C57BL6NJ_T0008177.1 MGP_C57BL6NJ_G0006671.1 mouse_genomes_project 4 144731545 144737530 - Gm13003 lincRNA lincRNA MGP_C57BL6NJ_T0065543.1 MGP_C57BL6NJ_G0028567.1 mouse_genomes_project 4 40507512 40570519 + MGP_C57BL6NJ_P0065543 Ube2r2 protein_coding protein_coding MGP_C57BL6NJ_T0065544.1 MGP_C57BL6NJ_G0028567.1 mouse_genomes_project 4 40559024 40567962 + Ube2r2 protein_coding retained_intron MGP_C57BL6NJ_T0065545.1 MGP_C57BL6NJ_G0028567.1 mouse_genomes_project 4 40566042 40568175 + Ube2r2 protein_coding retained_intron MGP_C57BL6NJ_T0103173.1 MGP_C57BL6NJ_G0040967.1 mouse_genomes_project 4 151734719 151735220 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0065050.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108359 3139729 + MGP_C57BL6NJ_P0065050 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0065051.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108386 3139100 + MGP_C57BL6NJ_P0065051 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0065052.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108417 3116838 + Sdcbp protein_coding processed_transcript MGP_C57BL6NJ_T0065053.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108418 3136521 + MGP_C57BL6NJ_P0065053 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0065054.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108421 3127689 + Sdcbp protein_coding processed_transcript MGP_C57BL6NJ_T0065055.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108422 3128524 + MGP_C57BL6NJ_P0065055 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0065056.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3108422 3152059 + MGP_C57BL6NJ_P0065056 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0065057.1 MGP_C57BL6NJ_G0028448.1 mouse_genomes_project 4 3119550 3136405 + MGP_C57BL6NJ_P0065057 Sdcbp protein_coding protein_coding MGP_C57BL6NJ_T0070045.1 MGP_C57BL6NJ_G0029611.1 mouse_genomes_project 4 162069110 162129011 + MGP_C57BL6NJ_P0070045 Chd5 protein_coding protein_coding MGP_C57BL6NJ_T0070046.1 MGP_C57BL6NJ_G0029611.1 mouse_genomes_project 4 162069110 162129011 + MGP_C57BL6NJ_P0070046 Chd5 protein_coding protein_coding MGP_C57BL6NJ_T0070047.1 MGP_C57BL6NJ_G0029611.1 mouse_genomes_project 4 162069346 162128998 + MGP_C57BL6NJ_P0070047 Chd5 protein_coding protein_coding MGP_C57BL6NJ_T0070048.1 MGP_C57BL6NJ_G0029611.1 mouse_genomes_project 4 162074865 162088933 + Chd5 protein_coding processed_transcript MGP_C57BL6NJ_T0070049.1 MGP_C57BL6NJ_G0029611.1 mouse_genomes_project 4 162109684 162128998 + Chd5 protein_coding processed_transcript MGP_C57BL6NJ_T0008181.1 MGP_C57BL6NJ_G0006675.1 mouse_genomes_project 4 147839004 147840452 + Gm1667 lincRNA lincRNA MGP_C57BL6NJ_T0069671.1 MGP_C57BL6NJ_G0029541.1 mouse_genomes_project 4 157146064 157152484 + MGP_C57BL6NJ_P0069671 2510039O18Rik protein_coding protein_coding MGP_C57BL6NJ_T0068695.1 MGP_C57BL6NJ_G0029286.1 mouse_genomes_project 4 139013817 139016113 + MGP_C57BL6NJ_P0068695 Gm10300 protein_coding protein_coding MGP_C57BL6NJ_T0068948.1 MGP_C57BL6NJ_G0029342.1 mouse_genomes_project 4 141513399 141515703 - MGP_C57BL6NJ_P0068948 Zfp593 protein_coding protein_coding MGP_C57BL6NJ_T0068949.1 MGP_C57BL6NJ_G0029342.1 mouse_genomes_project 4 141513417 141515653 - Zfp593 protein_coding processed_transcript MGP_C57BL6NJ_T0067180.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111852916 111868344 - MGP_C57BL6NJ_P0067180 Dio1 protein_coding protein_coding MGP_C57BL6NJ_T0067181.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853618 111868317 - MGP_C57BL6NJ_P0067181 Dio1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067182.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853781 111868299 - MGP_C57BL6NJ_P0067182 Dio1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067183.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853785 111868299 - MGP_C57BL6NJ_P0067183 Dio1 protein_coding protein_coding MGP_C57BL6NJ_T0067184.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853815 111868293 - MGP_C57BL6NJ_P0067184 Dio1 protein_coding protein_coding MGP_C57BL6NJ_T0067185.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853815 111868293 - MGP_C57BL6NJ_P0067185 Dio1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0067186.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111853815 111868293 - MGP_C57BL6NJ_P0067186 Dio1 protein_coding protein_coding MGP_C57BL6NJ_T0067187.1 MGP_C57BL6NJ_G0028959.1 mouse_genomes_project 4 111861020 111868241 - Dio1 protein_coding processed_transcript MGP_C57BL6NJ_T0066306.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59282230 59361256 - MGP_C57BL6NJ_P0066306 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066307.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59282230 59416166 - MGP_C57BL6NJ_P0066307 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066308.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59282230 59416362 - MGP_C57BL6NJ_P0066308 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066309.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59282230 59416120 - MGP_C57BL6NJ_P0066309 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066310.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59282230 59416437 - MGP_C57BL6NJ_P0066310 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066311.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59346883 59411210 - MGP_C57BL6NJ_P0066311 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066312.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59346938 59416707 - MGP_C57BL6NJ_P0066312 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0066313.1 MGP_C57BL6NJ_G0028746.1 mouse_genomes_project 4 59346972 59415993 - MGP_C57BL6NJ_P0066313 Lpar1 protein_coding protein_coding MGP_C57BL6NJ_T0065864.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348191 43350413 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065865.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348191 43350408 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065866.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348192 43348921 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065867.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348193 43348692 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065868.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348193 43350431 - MGP_C57BL6NJ_P0065868 Hint2 protein_coding protein_coding MGP_C57BL6NJ_T0065869.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348194 43350413 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065870.1 MGP_C57BL6NJ_G0028636.1 mouse_genomes_project 4 43348638 43349708 - Hint2 protein_coding processed_transcript MGP_C57BL6NJ_T0065843.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43262713 43272659 + MGP_C57BL6NJ_P0065843 Rgp1 protein_coding protein_coding MGP_C57BL6NJ_T0065844.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43262733 43272657 + MGP_C57BL6NJ_P0065844 Rgp1 protein_coding protein_coding MGP_C57BL6NJ_T0065845.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43262952 43264922 + Rgp1 protein_coding processed_transcript MGP_C57BL6NJ_T0065846.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43262956 43267129 + MGP_C57BL6NJ_P0065846 Rgp1 protein_coding protein_coding MGP_C57BL6NJ_T0065847.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43262981 43263621 + Rgp1 protein_coding retained_intron MGP_C57BL6NJ_T0065848.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43263735 43264918 + Rgp1 protein_coding retained_intron MGP_C57BL6NJ_T0065849.1 MGP_C57BL6NJ_G0028632.1 mouse_genomes_project 4 43265212 43265719 + Rgp1 protein_coding retained_intron MGP_C57BL6NJ_T0014805.1 MGP_C57BL6NJ_G0012850.1 mouse_genomes_project 4 21568348 21568765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004927.1 MGP_C57BL6NJ_G0004247.1 mouse_genomes_project 5 114158095 114161323 - A930041C12Rik antisense antisense MGP_C57BL6NJ_T0100499.1 MGP_C57BL6NJ_G0038545.1 mouse_genomes_project 5 152149759 152149866 - Gm24131 snRNA snRNA MGP_C57BL6NJ_T0073098.1 MGP_C57BL6NJ_G0030176.1 mouse_genomes_project 5 97146634 97167714 - MGP_C57BL6NJ_P0073098 Naaa protein_coding protein_coding MGP_C57BL6NJ_T0073099.1 MGP_C57BL6NJ_G0030176.1 mouse_genomes_project 5 97146639 97152336 - Naaa protein_coding retained_intron MGP_C57BL6NJ_T0073100.1 MGP_C57BL6NJ_G0030176.1 mouse_genomes_project 5 97147981 97167709 - MGP_C57BL6NJ_P0073100 Naaa protein_coding protein_coding MGP_C57BL6NJ_T0073101.1 MGP_C57BL6NJ_G0030176.1 mouse_genomes_project 5 97149104 97162092 - MGP_C57BL6NJ_P0073101 Naaa protein_coding protein_coding MGP_C57BL6NJ_T0073102.1 MGP_C57BL6NJ_G0030176.1 mouse_genomes_project 5 97165362 97167709 - Naaa protein_coding retained_intron MGP_C57BL6NJ_T0073611.1 MGP_C57BL6NJ_G0030283.1 mouse_genomes_project 5 114918476 114957823 + MGP_C57BL6NJ_P0073611 Pigg protein_coding protein_coding MGP_C57BL6NJ_T0073612.1 MGP_C57BL6NJ_G0030283.1 mouse_genomes_project 5 114918476 114958945 + MGP_C57BL6NJ_P0073612 Pigg protein_coding protein_coding MGP_C57BL6NJ_T0073613.1 MGP_C57BL6NJ_G0030283.1 mouse_genomes_project 5 114918503 114957828 + MGP_C57BL6NJ_P0073613 Pigg protein_coding protein_coding MGP_C57BL6NJ_T0015456.1 MGP_C57BL6NJ_G0013501.1 mouse_genomes_project 5 95297177 95297748 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005014.1 MGP_C57BL6NJ_G0004309.1 mouse_genomes_project 5 144422093 144506725 + Gm43278 antisense antisense MGP_C57BL6NJ_T0011855.1 MGP_C57BL6NJ_G0009940.1 mouse_genomes_project 5 31732162 31732464 + Gm24436 misc_RNA misc_RNA MGP_C57BL6NJ_T0071047.1 MGP_C57BL6NJ_G0029798.1 mouse_genomes_project 5 27573529 27583341 + MGP_C57BL6NJ_P0071047 Insig1 protein_coding protein_coding MGP_C57BL6NJ_T0071048.1 MGP_C57BL6NJ_G0029798.1 mouse_genomes_project 5 27576832 27579812 + Insig1 protein_coding retained_intron MGP_C57BL6NJ_T0071223.1 MGP_C57BL6NJ_G0029832.1 mouse_genomes_project 5 30672399 30684848 - MGP_C57BL6NJ_P0071223 Cgref1 protein_coding protein_coding MGP_C57BL6NJ_T0071224.1 MGP_C57BL6NJ_G0029832.1 mouse_genomes_project 5 30674494 30684663 - Cgref1 protein_coding retained_intron MGP_C57BL6NJ_T0099123.1 MGP_C57BL6NJ_G0037187.1 mouse_genomes_project 5 128019419 128019528 + n-R5s176 rRNA rRNA MGP_C57BL6NJ_T0073185.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98231354 98240323 + MGP_C57BL6NJ_P0073185 Ccng2 protein_coding protein_coding MGP_C57BL6NJ_T0073186.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98231686 98232552 + Ccng2 protein_coding processed_transcript MGP_C57BL6NJ_T0073187.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98231698 98233814 + Ccng2 protein_coding processed_transcript MGP_C57BL6NJ_T0073188.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98231736 98240317 + Ccng2 protein_coding retained_intron MGP_C57BL6NJ_T0073189.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98232411 98240316 + MGP_C57BL6NJ_P0073189 Ccng2 protein_coding protein_coding MGP_C57BL6NJ_T0073190.1 MGP_C57BL6NJ_G0030191.1 mouse_genomes_project 5 98232805 98237577 + Ccng2 protein_coding retained_intron MGP_C57BL6NJ_T0015332.1 MGP_C57BL6NJ_G0013377.1 mouse_genomes_project 5 34418418 34418877 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008269.1 MGP_C57BL6NJ_G0006743.1 mouse_genomes_project 5 34036659 34037835 - Gm42851 lincRNA lincRNA MGP_C57BL6NJ_T0001839.1 MGP_C57BL6NJ_G0001732.1 mouse_genomes_project 5 79531720 79535896 - TEC TEC MGP_C57BL6NJ_T0002011.1 MGP_C57BL6NJ_G0001903.1 mouse_genomes_project 5 142957401 142958323 + TEC TEC MGP_C57BL6NJ_T0073043.1 MGP_C57BL6NJ_G0030160.1 mouse_genomes_project 5 95559145 95569349 + MGP_C57BL6NJ_P0073043 Cxcl15 protein_coding protein_coding MGP_C57BL6NJ_T0015409.1 MGP_C57BL6NJ_G0013454.1 mouse_genomes_project 5 74934833 74935604 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101758.1 MGP_C57BL6NJ_G0039804.1 mouse_genomes_project 5 114465260 114465354 + Snord21 snoRNA snoRNA MGP_C57BL6NJ_T0001656.1 MGP_C57BL6NJ_G0001552.1 mouse_genomes_project 5 40060807 40064225 - TEC TEC MGP_C57BL6NJ_T0010953.1 MGP_C57BL6NJ_G0009038.1 mouse_genomes_project 5 117588741 117588808 - Mir7026 miRNA miRNA MGP_C57BL6NJ_T0071046.1 MGP_C57BL6NJ_G0029797.1 mouse_genomes_project 5 27293756 27308474 + MGP_C57BL6NJ_P0071046 Htr5a protein_coding protein_coding MGP_C57BL6NJ_T0001921.1 MGP_C57BL6NJ_G0001814.1 mouse_genomes_project 5 124764953 124767678 + TEC TEC MGP_C57BL6NJ_T0004834.1 MGP_C57BL6NJ_G0004182.1 mouse_genomes_project 5 37294110 37297593 - Gm26647 antisense antisense MGP_C57BL6NJ_T0005045.1 MGP_C57BL6NJ_G0004330.1 mouse_genomes_project 5 154154946 154168303 - Gm20635 antisense antisense MGP_C57BL6NJ_T0074548.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130527790 130533694 + MGP_C57BL6NJ_P0074548 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074549.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130527796 130532133 + MGP_C57BL6NJ_P0074549 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074550.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130527819 130531745 + MGP_C57BL6NJ_P0074550 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074551.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130527822 130542245 + MGP_C57BL6NJ_P0074551 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074552.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130527871 130531876 + MGP_C57BL6NJ_P0074552 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074553.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130528000 130529593 + Myl2 protein_coding processed_transcript MGP_C57BL6NJ_T0074554.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130528224 130531728 + MGP_C57BL6NJ_P0074554 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074555.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130528419 130530768 + MGP_C57BL6NJ_P0074555 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074556.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130528636 130531546 + MGP_C57BL6NJ_P0074556 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0074557.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130530018 130533688 + Myl2 protein_coding processed_transcript MGP_C57BL6NJ_T0074558.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130530020 130533694 + Myl2 protein_coding processed_transcript MGP_C57BL6NJ_T0074559.1 MGP_C57BL6NJ_G0030470.1 mouse_genomes_project 5 130530752 130531843 + MGP_C57BL6NJ_P0074559 Myl2 protein_coding protein_coding MGP_C57BL6NJ_T0008221.1 MGP_C57BL6NJ_G0006713.1 mouse_genomes_project 5 14450900 14474452 - 4930519H02Rik lincRNA lincRNA MGP_C57BL6NJ_T0008222.1 MGP_C57BL6NJ_G0006713.1 mouse_genomes_project 5 14454046 14474515 - 4930519H02Rik lincRNA lincRNA MGP_C57BL6NJ_T0015619.1 MGP_C57BL6NJ_G0013664.1 mouse_genomes_project 5 162701561 162703417 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008317.1 MGP_C57BL6NJ_G0006778.1 mouse_genomes_project 5 54565526 54576651 - Gm42745 lincRNA lincRNA MGP_C57BL6NJ_T0072205.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041041 55078734 + MGP_C57BL6NJ_P0072205 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072206.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041062 55140588 + MGP_C57BL6NJ_P0072206 Tbc1d19 protein_coding protein_coding MGP_C57BL6NJ_T0072207.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041083 55070686 + Tbc1d19 protein_coding processed_transcript MGP_C57BL6NJ_T0072208.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041084 55064995 + Tbc1d19 protein_coding retained_intron MGP_C57BL6NJ_T0072209.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041089 55140586 + MGP_C57BL6NJ_P0072209 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072210.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55041114 55072225 + MGP_C57BL6NJ_P0072210 Tbc1d19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072211.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55066822 55072167 + Tbc1d19 protein_coding retained_intron MGP_C57BL6NJ_T0072212.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55070675 55082973 + Tbc1d19 protein_coding processed_transcript MGP_C57BL6NJ_T0072213.1 MGP_C57BL6NJ_G0029987.1 mouse_genomes_project 5 55127726 55140361 + Tbc1d19 protein_coding processed_transcript MGP_C57BL6NJ_T0073894.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120206530 120211802 - MGP_C57BL6NJ_P0073894 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073895.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120206530 120211359 - MGP_C57BL6NJ_P0073895 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073896.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120206530 120212276 - MGP_C57BL6NJ_P0073896 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073897.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120206534 120211802 - MGP_C57BL6NJ_P0073897 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073898.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120206538 120212275 - MGP_C57BL6NJ_P0073898 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073899.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120207715 120211083 - Crybb3 protein_coding retained_intron MGP_C57BL6NJ_T0073900.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120207980 120211358 - Crybb3 protein_coding retained_intron MGP_C57BL6NJ_T0073901.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120209080 120211345 - MGP_C57BL6NJ_P0073901 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073902.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120209163 120212271 - MGP_C57BL6NJ_P0073902 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0073903.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120209229 120212272 - Crybb3 protein_coding processed_transcript MGP_C57BL6NJ_T0073904.1 MGP_C57BL6NJ_G0030343.1 mouse_genomes_project 5 120210448 120211751 - MGP_C57BL6NJ_P0073904 Crybb3 protein_coding protein_coding MGP_C57BL6NJ_T0001785.1 MGP_C57BL6NJ_G0001679.1 mouse_genomes_project 5 68487537 68490872 - TEC TEC MGP_C57BL6NJ_T0075386.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144813507 144849971 + Mlxipl protein_coding processed_transcript MGP_C57BL6NJ_T0075387.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144834995 144851227 + Mlxipl protein_coding retained_intron MGP_C57BL6NJ_T0075388.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835006 144851878 + MGP_C57BL6NJ_P0075388 Mlxipl protein_coding protein_coding MGP_C57BL6NJ_T0075389.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835008 144866054 + MGP_C57BL6NJ_P0075389 Mlxipl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075390.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835017 144866054 + MGP_C57BL6NJ_P0075390 Mlxipl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075391.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835017 144866054 + MGP_C57BL6NJ_P0075391 Mlxipl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075392.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835017 144866054 + MGP_C57BL6NJ_P0075392 Mlxipl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075393.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144835022 144866514 + MGP_C57BL6NJ_P0075393 Mlxipl protein_coding protein_coding MGP_C57BL6NJ_T0075394.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144861741 144862742 + MGP_C57BL6NJ_P0075394 Mlxipl protein_coding protein_coding MGP_C57BL6NJ_T0075395.1 MGP_C57BL6NJ_G0030605.1 mouse_genomes_project 5 144861762 144863870 + MGP_C57BL6NJ_P0075395 Mlxipl protein_coding protein_coding MGP_C57BL6NJ_T0011870.1 MGP_C57BL6NJ_G0009955.1 mouse_genomes_project 5 119273051 119273125 - Gm27882 misc_RNA misc_RNA MGP_C57BL6NJ_T0070847.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22637262 22754118 - MGP_C57BL6NJ_P0070847 Srpk2 protein_coding protein_coding MGP_C57BL6NJ_T0070848.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22639450 22818622 - MGP_C57BL6NJ_P0070848 Srpk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070849.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22661522 22679260 - Srpk2 protein_coding processed_transcript MGP_C57BL6NJ_T0070850.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22663738 22818188 - MGP_C57BL6NJ_P0070850 Srpk2 protein_coding protein_coding MGP_C57BL6NJ_T0070851.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22681308 22818141 - Srpk2 protein_coding retained_intron MGP_C57BL6NJ_T0070852.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22683727 22686244 - Srpk2 protein_coding retained_intron MGP_C57BL6NJ_T0070853.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22684125 22826608 - MGP_C57BL6NJ_P0070853 Srpk2 protein_coding protein_coding MGP_C57BL6NJ_T0070854.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22702057 22818529 - MGP_C57BL6NJ_P0070854 Srpk2 protein_coding protein_coding MGP_C57BL6NJ_T0070855.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22702162 22826591 - MGP_C57BL6NJ_P0070855 Srpk2 protein_coding protein_coding MGP_C57BL6NJ_T0070856.1 MGP_C57BL6NJ_G0029760.1 mouse_genomes_project 5 22752313 22754139 - Srpk2 protein_coding retained_intron MGP_C57BL6NJ_T0071704.1 MGP_C57BL6NJ_G0029900.1 mouse_genomes_project 5 34774558 34796522 - MGP_C57BL6NJ_P0071704 Nop14 protein_coding protein_coding MGP_C57BL6NJ_T0071705.1 MGP_C57BL6NJ_G0029900.1 mouse_genomes_project 5 34777349 34782830 - MGP_C57BL6NJ_P0071705 Nop14 protein_coding protein_coding MGP_C57BL6NJ_T0071706.1 MGP_C57BL6NJ_G0029900.1 mouse_genomes_project 5 34779633 34784094 - Nop14 protein_coding retained_intron MGP_C57BL6NJ_T0100442.1 MGP_C57BL6NJ_G0038488.1 mouse_genomes_project 5 53450769 53450874 - Gm25601 snRNA snRNA MGP_C57BL6NJ_T0099462.1 MGP_C57BL6NJ_G0037519.1 mouse_genomes_project 5 22816885 22817693 - Gm43566 sense_intronic sense_intronic MGP_C57BL6NJ_T0001987.1 MGP_C57BL6NJ_G0001879.1 mouse_genomes_project 5 140389341 140390976 - TEC TEC MGP_C57BL6NJ_T0015606.1 MGP_C57BL6NJ_G0013651.1 mouse_genomes_project 5 158662332 158662755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075894.1 MGP_C57BL6NJ_G0030704.1 mouse_genomes_project 5 149065880 149067887 + Gm5294 protein_coding unprocessed_pseudogene MGP_C57BL6NJ_T0075895.1 MGP_C57BL6NJ_G0030704.1 mouse_genomes_project 5 149066590 149068130 + MGP_C57BL6NJ_P0075895 Gm5294 protein_coding protein_coding MGP_C57BL6NJ_T0072832.1 MGP_C57BL6NJ_G0030094.1 mouse_genomes_project 5 90418174 90474504 - MGP_C57BL6NJ_P0072832 Cenpc1 protein_coding protein_coding MGP_C57BL6NJ_T0072833.1 MGP_C57BL6NJ_G0030094.1 mouse_genomes_project 5 90452276 90474472 - Cenpc1 protein_coding retained_intron MGP_C57BL6NJ_T0072834.1 MGP_C57BL6NJ_G0030094.1 mouse_genomes_project 5 90452277 90474468 - Cenpc1 protein_coding retained_intron MGP_C57BL6NJ_T0072835.1 MGP_C57BL6NJ_G0030094.1 mouse_genomes_project 5 90465553 90474443 - Cenpc1 protein_coding retained_intron MGP_C57BL6NJ_T0002034.1 MGP_C57BL6NJ_G0001925.1 mouse_genomes_project 5 154068022 154069048 + TEC TEC MGP_C57BL6NJ_T0015240.1 MGP_C57BL6NJ_G0013285.1 mouse_genomes_project 5 5303361 5304101 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001735.1 MGP_C57BL6NJ_G0001630.1 mouse_genomes_project 5 55141786 55147470 + TEC TEC MGP_C57BL6NJ_T0008641.1 MGP_C57BL6NJ_G0007008.1 mouse_genomes_project 5 160654829 160664107 + Gm42788 lincRNA lincRNA MGP_C57BL6NJ_T0018647.1 MGP_C57BL6NJ_G0016003.1 mouse_genomes_project 5 131545334 131576804 - Gm44574 processed_transcript processed_transcript MGP_C57BL6NJ_T0100456.1 MGP_C57BL6NJ_G0038502.1 mouse_genomes_project 5 78547540 78547645 - Gm22084 snRNA snRNA MGP_C57BL6NJ_T0071586.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33906064 33987391 + MGP_C57BL6NJ_P0071586 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071587.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33906083 33961952 + MGP_C57BL6NJ_P0071587 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071588.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33906168 33934364 + MGP_C57BL6NJ_P0071588 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071589.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931293 33987400 + MGP_C57BL6NJ_P0071589 Whsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071590.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931293 33966731 + MGP_C57BL6NJ_P0071590 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071591.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931293 33987400 + MGP_C57BL6NJ_P0071591 Whsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071592.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931293 33987391 + MGP_C57BL6NJ_P0071592 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071593.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931322 33985137 + MGP_C57BL6NJ_P0071593 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071594.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33931377 33984920 + MGP_C57BL6NJ_P0071594 Whsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071595.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33949283 33966739 + MGP_C57BL6NJ_P0071595 Whsc1 protein_coding protein_coding MGP_C57BL6NJ_T0071596.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33967663 33969529 + Whsc1 protein_coding retained_intron MGP_C57BL6NJ_T0071597.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33968599 33984851 + MGP_C57BL6NJ_P0071597 Whsc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071598.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33974932 33981099 + Whsc1 protein_coding retained_intron MGP_C57BL6NJ_T0071599.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33974946 33977142 + Whsc1 protein_coding retained_intron MGP_C57BL6NJ_T0071600.1 MGP_C57BL6NJ_G0029885.1 mouse_genomes_project 5 33981329 33984520 + Whsc1 protein_coding retained_intron MGP_C57BL6NJ_T0015503.1 MGP_C57BL6NJ_G0013548.1 mouse_genomes_project 5 114622607 114623029 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074763.1 MGP_C57BL6NJ_G0030502.1 mouse_genomes_project 5 132182144 132185372 + MGP_C57BL6NJ_P0074763 B3gnt4 protein_coding protein_coding MGP_C57BL6NJ_T0004796.1 MGP_C57BL6NJ_G0004150.1 mouse_genomes_project 5 13187525 13216112 - Gm26954 antisense antisense MGP_C57BL6NJ_T0004797.1 MGP_C57BL6NJ_G0004150.1 mouse_genomes_project 5 13204485 13216097 - Gm26954 antisense antisense MGP_C57BL6NJ_T0076418.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158685760 158824361 + MGP_C57BL6NJ_P0076418 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0076419.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158686052 158824355 + MGP_C57BL6NJ_P0076419 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0076420.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158686495 158711722 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076421.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158686495 158710117 + Pan3 protein_coding processed_transcript MGP_C57BL6NJ_T0076422.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158686495 158802888 + MGP_C57BL6NJ_P0076422 Pan3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076423.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158707237 158761991 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076424.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158707241 158821797 + MGP_C57BL6NJ_P0076424 Pan3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076425.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158707241 158821797 + MGP_C57BL6NJ_P0076425 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0076426.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158707321 158802512 + MGP_C57BL6NJ_P0076426 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0076427.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158708226 158710495 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076428.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158709643 158766062 + Pan3 protein_coding processed_transcript MGP_C57BL6NJ_T0076429.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158709674 158824355 + MGP_C57BL6NJ_P0076429 Pan3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076430.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158793352 158797130 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076431.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158795136 158802542 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076432.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158795537 158824355 + MGP_C57BL6NJ_P0076432 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0076433.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158801954 158802869 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076434.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158805594 158824347 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076435.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158805799 158807607 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076436.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158805875 158809215 + Pan3 protein_coding processed_transcript MGP_C57BL6NJ_T0076437.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158807262 158809161 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076438.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158812175 158818977 + Pan3 protein_coding retained_intron MGP_C57BL6NJ_T0076439.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158813067 158821532 + Pan3 protein_coding processed_transcript MGP_C57BL6NJ_T0076440.1 MGP_C57BL6NJ_G0030827.1 mouse_genomes_project 5 158815128 158824352 + MGP_C57BL6NJ_P0076440 Pan3 protein_coding protein_coding MGP_C57BL6NJ_T0070574.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5493759 5519762 + MGP_C57BL6NJ_P0070574 Sri protein_coding protein_coding MGP_C57BL6NJ_T0070575.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5504018 5519534 + MGP_C57BL6NJ_P0070575 Sri protein_coding protein_coding MGP_C57BL6NJ_T0070576.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5504049 5505347 + Sri protein_coding retained_intron MGP_C57BL6NJ_T0070577.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5504053 5507213 + Sri protein_coding retained_intron MGP_C57BL6NJ_T0070578.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5504099 5512690 + Sri protein_coding retained_intron MGP_C57BL6NJ_T0070579.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5506833 5518143 + Sri protein_coding retained_intron MGP_C57BL6NJ_T0070580.1 MGP_C57BL6NJ_G0029711.1 mouse_genomes_project 5 5509362 5510568 + Sri protein_coding retained_intron MGP_C57BL6NJ_T0002001.1 MGP_C57BL6NJ_G0001893.1 mouse_genomes_project 5 141437943 141445268 - TEC TEC MGP_C57BL6NJ_T0001859.1 MGP_C57BL6NJ_G0001752.1 mouse_genomes_project 5 102384438 102384958 + TEC TEC MGP_C57BL6NJ_T0001932.1 MGP_C57BL6NJ_G0001825.1 mouse_genomes_project 5 127502849 127505224 - TEC TEC MGP_C57BL6NJ_T0075306.1 MGP_C57BL6NJ_G0030588.1 mouse_genomes_project 5 144122120 144186753 - MGP_C57BL6NJ_P0075306 Clip2 protein_coding protein_coding MGP_C57BL6NJ_T0075307.1 MGP_C57BL6NJ_G0030588.1 mouse_genomes_project 5 144122124 144186753 - MGP_C57BL6NJ_P0075307 Clip2 protein_coding protein_coding MGP_C57BL6NJ_T0075308.1 MGP_C57BL6NJ_G0030588.1 mouse_genomes_project 5 144148128 144150494 - Clip2 protein_coding retained_intron MGP_C57BL6NJ_T0008429.1 MGP_C57BL6NJ_G0006864.1 mouse_genomes_project 5 111782025 111786571 + Gm42749 lincRNA lincRNA MGP_C57BL6NJ_T0008430.1 MGP_C57BL6NJ_G0006864.1 mouse_genomes_project 5 111785944 111788329 + Gm42749 lincRNA lincRNA MGP_C57BL6NJ_T0074663.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131322930 131356503 - MGP_C57BL6NJ_P0074663 Anapc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074664.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131322930 131356510 - MGP_C57BL6NJ_P0074664 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074665.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131322930 131356510 - MGP_C57BL6NJ_P0074665 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074666.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131322932 131356503 - MGP_C57BL6NJ_P0074666 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074667.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131322940 131356517 - MGP_C57BL6NJ_P0074667 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074668.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131323016 131356373 - MGP_C57BL6NJ_P0074668 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074669.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131323124 131328739 - MGP_C57BL6NJ_P0074669 Anapc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074670.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131323624 131335004 - Anapc5 protein_coding retained_intron MGP_C57BL6NJ_T0074671.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131327074 131329691 - MGP_C57BL6NJ_P0074671 Anapc5 protein_coding protein_coding MGP_C57BL6NJ_T0074672.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131328660 131337740 - Anapc5 protein_coding retained_intron MGP_C57BL6NJ_T0074673.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131334668 131342617 - MGP_C57BL6NJ_P0074673 Anapc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074674.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131334743 131353806 - Anapc5 protein_coding processed_transcript MGP_C57BL6NJ_T0074675.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131335368 131341625 - Anapc5 protein_coding retained_intron MGP_C57BL6NJ_T0074676.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131335552 131356502 - Anapc5 protein_coding retained_intron MGP_C57BL6NJ_T0074677.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131341117 131356241 - Anapc5 protein_coding retained_intron MGP_C57BL6NJ_T0074678.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131342602 131356493 - MGP_C57BL6NJ_P0074678 Anapc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074679.1 MGP_C57BL6NJ_G0030487.1 mouse_genomes_project 5 131353079 131356498 - Anapc5 protein_coding processed_transcript MGP_C57BL6NJ_T0074588.1 MGP_C57BL6NJ_G0030476.1 mouse_genomes_project 5 130789405 130823826 - MGP_C57BL6NJ_P0074588 Rad9b protein_coding protein_coding MGP_C57BL6NJ_T0074589.1 MGP_C57BL6NJ_G0030476.1 mouse_genomes_project 5 130791702 130820888 - MGP_C57BL6NJ_P0074589 Rad9b protein_coding protein_coding MGP_C57BL6NJ_T0074590.1 MGP_C57BL6NJ_G0030476.1 mouse_genomes_project 5 130791704 130823827 - MGP_C57BL6NJ_P0074590 Rad9b protein_coding protein_coding MGP_C57BL6NJ_T0074591.1 MGP_C57BL6NJ_G0030476.1 mouse_genomes_project 5 130820865 130822379 - MGP_C57BL6NJ_P0074591 Rad9b protein_coding protein_coding MGP_C57BL6NJ_T0074592.1 MGP_C57BL6NJ_G0030476.1 mouse_genomes_project 5 130822088 130823814 - Rad9b protein_coding retained_intron MGP_C57BL6NJ_T0073986.1 MGP_C57BL6NJ_G0030361.1 mouse_genomes_project 5 121355363 121359608 - MGP_C57BL6NJ_P0073986 Alkbh2 protein_coding protein_coding MGP_C57BL6NJ_T0073987.1 MGP_C57BL6NJ_G0030361.1 mouse_genomes_project 5 121355372 121359650 - MGP_C57BL6NJ_P0073987 Alkbh2 protein_coding protein_coding MGP_C57BL6NJ_T0073988.1 MGP_C57BL6NJ_G0030361.1 mouse_genomes_project 5 121359037 121359613 - MGP_C57BL6NJ_P0073988 Alkbh2 protein_coding protein_coding MGP_C57BL6NJ_T0072955.1 MGP_C57BL6NJ_G0030137.1 mouse_genomes_project 5 93120838 93142777 + MGP_C57BL6NJ_P0072955 Enam protein_coding protein_coding MGP_C57BL6NJ_T0072956.1 MGP_C57BL6NJ_G0030137.1 mouse_genomes_project 5 93120845 93144096 + MGP_C57BL6NJ_P0072956 Enam protein_coding protein_coding MGP_C57BL6NJ_T0073281.1 MGP_C57BL6NJ_G0030215.1 mouse_genomes_project 5 105784359 105860726 - MGP_C57BL6NJ_P0073281 Tmem150c protein_coding protein_coding MGP_C57BL6NJ_T0073282.1 MGP_C57BL6NJ_G0030215.1 mouse_genomes_project 5 105790433 105860343 - Tmem150c protein_coding retained_intron MGP_C57BL6NJ_T0073283.1 MGP_C57BL6NJ_G0030215.1 mouse_genomes_project 5 105790434 105829573 - Tmem150c protein_coding retained_intron MGP_C57BL6NJ_T0073284.1 MGP_C57BL6NJ_G0030215.1 mouse_genomes_project 5 105792493 105860488 - Tmem150c protein_coding retained_intron MGP_C57BL6NJ_T0073285.1 MGP_C57BL6NJ_G0030215.1 mouse_genomes_project 5 105792614 105860192 - MGP_C57BL6NJ_P0073285 Tmem150c protein_coding protein_coding MGP_C57BL6NJ_T0075337.1 MGP_C57BL6NJ_G0030594.1 mouse_genomes_project 5 144374270 144422375 - MGP_C57BL6NJ_P0075337 Eln protein_coding protein_coding MGP_C57BL6NJ_T0075338.1 MGP_C57BL6NJ_G0030594.1 mouse_genomes_project 5 144374515 144399265 - Eln protein_coding retained_intron MGP_C57BL6NJ_T0075339.1 MGP_C57BL6NJ_G0030594.1 mouse_genomes_project 5 144374515 144422298 - MGP_C57BL6NJ_P0075339 Eln protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075340.1 MGP_C57BL6NJ_G0030594.1 mouse_genomes_project 5 144399567 144403076 - Eln protein_coding retained_intron MGP_C57BL6NJ_T0075341.1 MGP_C57BL6NJ_G0030594.1 mouse_genomes_project 5 144419787 144422305 - Eln protein_coding retained_intron MGP_C57BL6NJ_T0008417.1 MGP_C57BL6NJ_G0006857.1 mouse_genomes_project 5 107926713 107928278 + Gm29707 lincRNA lincRNA MGP_C57BL6NJ_T0008418.1 MGP_C57BL6NJ_G0006857.1 mouse_genomes_project 5 107927345 107927836 + Gm29707 lincRNA lincRNA MGP_C57BL6NJ_T0100477.1 MGP_C57BL6NJ_G0038523.1 mouse_genomes_project 5 113818192 113818294 + Gm22557 snRNA snRNA MGP_C57BL6NJ_T0015278.1 MGP_C57BL6NJ_G0013323.1 mouse_genomes_project 5 20952706 20953348 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015547.1 MGP_C57BL6NJ_G0013592.1 mouse_genomes_project 5 132125421 132125799 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072773.1 MGP_C57BL6NJ_G0030087.1 mouse_genomes_project 5 80609484 80634240 + MGP_C57BL6NJ_P0072773 Rest protein_coding protein_coding MGP_C57BL6NJ_T0072774.1 MGP_C57BL6NJ_G0030087.1 mouse_genomes_project 5 80610189 80634240 + MGP_C57BL6NJ_P0072774 Rest protein_coding protein_coding MGP_C57BL6NJ_T0073932.1 MGP_C57BL6NJ_G0030351.1 mouse_genomes_project 5 120932994 120937792 + MGP_C57BL6NJ_P0073932 Ficd protein_coding protein_coding MGP_C57BL6NJ_T0073527.1 MGP_C57BL6NJ_G0030268.1 mouse_genomes_project 5 113963759 114034869 + MGP_C57BL6NJ_P0073527 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073528.1 MGP_C57BL6NJ_G0030268.1 mouse_genomes_project 5 113963790 114017363 + MGP_C57BL6NJ_P0073528 protein_coding protein_coding MGP_C57BL6NJ_T0073529.1 MGP_C57BL6NJ_G0030268.1 mouse_genomes_project 5 113977636 113996873 + protein_coding processed_transcript MGP_C57BL6NJ_T0008307.1 MGP_C57BL6NJ_G0006768.1 mouse_genomes_project 5 45961853 46025563 - Gm43303 lincRNA lincRNA MGP_C57BL6NJ_T0010932.1 MGP_C57BL6NJ_G0009017.1 mouse_genomes_project 5 66893978 66894095 - Gm25306 miRNA miRNA MGP_C57BL6NJ_T0015532.1 MGP_C57BL6NJ_G0013577.1 mouse_genomes_project 5 122669930 122670232 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102284.1 MGP_C57BL6NJ_G0040265.1 mouse_genomes_project 5 160664824 160665698 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102285.1 MGP_C57BL6NJ_G0040265.1 mouse_genomes_project 5 160665117 160665888 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0074702.1 MGP_C57BL6NJ_G0030490.1 mouse_genomes_project 5 131579003 131595506 + MGP_C57BL6NJ_P0074702 Orai1 protein_coding protein_coding MGP_C57BL6NJ_T0074703.1 MGP_C57BL6NJ_G0030490.1 mouse_genomes_project 5 131579003 131595806 + MGP_C57BL6NJ_P0074703 Orai1 protein_coding protein_coding MGP_C57BL6NJ_T0074704.1 MGP_C57BL6NJ_G0030490.1 mouse_genomes_project 5 131579267 131594840 + Orai1 protein_coding processed_transcript MGP_C57BL6NJ_T0075896.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149232516 149251602 - MGP_C57BL6NJ_P0075896 Pdgfa protein_coding protein_coding MGP_C57BL6NJ_T0075897.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149233018 149251518 - MGP_C57BL6NJ_P0075897 Pdgfa protein_coding protein_coding MGP_C57BL6NJ_T0075898.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149233437 149254195 - MGP_C57BL6NJ_P0075898 Pdgfa protein_coding protein_coding MGP_C57BL6NJ_T0075899.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149233466 149255478 - MGP_C57BL6NJ_P0075899 Pdgfa protein_coding protein_coding MGP_C57BL6NJ_T0075900.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149233640 149250846 - Pdgfa protein_coding processed_transcript MGP_C57BL6NJ_T0075901.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149242834 149251049 - Pdgfa protein_coding processed_transcript MGP_C57BL6NJ_T0075902.1 MGP_C57BL6NJ_G0030705.1 mouse_genomes_project 5 149245005 149254109 - Pdgfa protein_coding processed_transcript MGP_C57BL6NJ_T0001906.1 MGP_C57BL6NJ_G0001799.1 mouse_genomes_project 5 120483130 120484330 - TEC TEC MGP_C57BL6NJ_T0071855.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37284281 37349432 + MGP_C57BL6NJ_P0071855 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071856.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37285058 37343303 + Jakmip1 protein_coding processed_transcript MGP_C57BL6NJ_T0071857.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37285813 37349528 + MGP_C57BL6NJ_P0071857 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071858.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37285833 37349227 + MGP_C57BL6NJ_P0071858 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071859.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37304577 37343323 + Jakmip1 protein_coding processed_transcript MGP_C57BL6NJ_T0071860.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37304987 37344948 + Jakmip1 protein_coding retained_intron MGP_C57BL6NJ_T0071861.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37305028 37363848 + MGP_C57BL6NJ_P0071861 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071862.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37308421 37386846 + MGP_C57BL6NJ_P0071862 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071863.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37308480 37345235 + Jakmip1 protein_coding retained_intron MGP_C57BL6NJ_T0071864.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37343362 37410430 + MGP_C57BL6NJ_P0071864 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071865.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37343362 37410430 + MGP_C57BL6NJ_P0071865 Jakmip1 protein_coding protein_coding MGP_C57BL6NJ_T0071866.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37349064 37350014 + Jakmip1 protein_coding retained_intron MGP_C57BL6NJ_T0071867.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37384521 37386571 + Jakmip1 protein_coding retained_intron MGP_C57BL6NJ_T0071868.1 MGP_C57BL6NJ_G0029929.1 mouse_genomes_project 5 37387772 37413722 + MGP_C57BL6NJ_P0071868 Jakmip1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100460.1 MGP_C57BL6NJ_G0038506.1 mouse_genomes_project 5 86824875 86824972 + Gm24129 snRNA snRNA MGP_C57BL6NJ_T0074399.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128722858 128756510 - MGP_C57BL6NJ_P0074399 Dtx1 protein_coding protein_coding MGP_C57BL6NJ_T0074400.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128722859 128740197 - Dtx1 protein_coding retained_intron MGP_C57BL6NJ_T0074401.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128722905 128724734 - Dtx1 protein_coding retained_intron MGP_C57BL6NJ_T0074402.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128723858 128725570 - Dtx1 protein_coding retained_intron MGP_C57BL6NJ_T0074403.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128724108 128725468 - Dtx1 protein_coding retained_intron MGP_C57BL6NJ_T0074404.1 MGP_C57BL6NJ_G0030442.1 mouse_genomes_project 5 128739514 128750676 - Dtx1 protein_coding processed_transcript MGP_C57BL6NJ_T0015502.1 MGP_C57BL6NJ_G0013547.1 mouse_genomes_project 5 114566508 114566735 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074153.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122709428 122714635 - MGP_C57BL6NJ_P0074153 Dynll1 protein_coding protein_coding MGP_C57BL6NJ_T0074154.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122710740 122714299 - Dynll1 protein_coding retained_intron MGP_C57BL6NJ_T0074155.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122710749 122711754 - Dynll1 protein_coding processed_transcript MGP_C57BL6NJ_T0074156.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122710823 122714548 - MGP_C57BL6NJ_P0074156 Dynll1 protein_coding protein_coding MGP_C57BL6NJ_T0074157.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122711874 122714515 - Dynll1 protein_coding processed_transcript MGP_C57BL6NJ_T0074158.1 MGP_C57BL6NJ_G0030394.1 mouse_genomes_project 5 122713911 122714570 - Dynll1 protein_coding retained_intron MGP_C57BL6NJ_T0008609.1 MGP_C57BL6NJ_G0006981.1 mouse_genomes_project 5 153971606 153984849 + lincRNA lincRNA MGP_C57BL6NJ_T0072959.1 MGP_C57BL6NJ_G0030139.1 mouse_genomes_project 5 93188274 93189903 + MGP_C57BL6NJ_P0072959 Utp3 protein_coding protein_coding MGP_C57BL6NJ_T0010967.1 MGP_C57BL6NJ_G0009052.1 mouse_genomes_project 5 132724150 132724229 + Mir7032 miRNA miRNA MGP_C57BL6NJ_T0070605.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5873189 5901396 - MGP_C57BL6NJ_P0070605 Dbf4 protein_coding protein_coding MGP_C57BL6NJ_T0070606.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5873433 5901228 - MGP_C57BL6NJ_P0070606 Dbf4 protein_coding protein_coding MGP_C57BL6NJ_T0070607.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5874068 5877657 - Dbf4 protein_coding retained_intron MGP_C57BL6NJ_T0070609.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5879012 5901397 - Dbf4 protein_coding retained_intron MGP_C57BL6NJ_T0070610.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5880494 5882592 - Dbf4 protein_coding retained_intron MGP_C57BL6NJ_T0070611.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5895778 5901410 - Dbf4 protein_coding processed_transcript MGP_C57BL6NJ_T0070612.1 MGP_C57BL6NJ_G0029713.1 mouse_genomes_project 5 5900899 5901385 - Dbf4 protein_coding retained_intron MGP_C57BL6NJ_T0015302.1 MGP_C57BL6NJ_G0013347.1 mouse_genomes_project 5 26276993 26277128 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071237.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30792049 30804800 - MGP_C57BL6NJ_P0071237 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0071238.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30792049 30806683 - MGP_C57BL6NJ_P0071238 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0071239.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30792049 30806321 - MGP_C57BL6NJ_P0071239 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0071240.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30792050 30804807 - MGP_C57BL6NJ_P0071240 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0071241.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30792900 30794008 - Slc5a6 protein_coding retained_intron MGP_C57BL6NJ_T0071242.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30795365 30798619 - MGP_C57BL6NJ_P0071242 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0071243.1 MGP_C57BL6NJ_G0029835.1 mouse_genomes_project 5 30799108 30804877 - MGP_C57BL6NJ_P0071243 Slc5a6 protein_coding protein_coding MGP_C57BL6NJ_T0015545.1 MGP_C57BL6NJ_G0013590.1 mouse_genomes_project 5 131209269 131209668 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102264.1 MGP_C57BL6NJ_G0040251.1 mouse_genomes_project 5 51699843 51703694 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0015289.1 MGP_C57BL6NJ_G0013334.1 mouse_genomes_project 5 23309524 23309975 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015537.1 MGP_C57BL6NJ_G0013582.1 mouse_genomes_project 5 124950114 124950492 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073322.1 MGP_C57BL6NJ_G0030221.1 mouse_genomes_project 5 106431927 106477200 - MGP_C57BL6NJ_P0073322 Hpse protein_coding protein_coding MGP_C57BL6NJ_T0073323.1 MGP_C57BL6NJ_G0030221.1 mouse_genomes_project 5 106437007 106477189 - MGP_C57BL6NJ_P0073323 Hpse protein_coding protein_coding MGP_C57BL6NJ_T0001578.1 MGP_C57BL6NJ_G0001477.1 mouse_genomes_project 5 6547693 6547924 + TEC TEC MGP_C57BL6NJ_T0072326.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67861177 67942868 + MGP_C57BL6NJ_P0072326 Ube2k protein_coding protein_coding MGP_C57BL6NJ_T0072327.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67861201 67942062 + MGP_C57BL6NJ_P0072327 Ube2k protein_coding protein_coding MGP_C57BL6NJ_T0072328.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67861207 67942868 + MGP_C57BL6NJ_P0072328 Ube2k protein_coding protein_coding MGP_C57BL6NJ_T0072329.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67861250 67942258 + MGP_C57BL6NJ_P0072329 Ube2k protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072330.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67861400 67943141 + MGP_C57BL6NJ_P0072330 Ube2k protein_coding protein_coding MGP_C57BL6NJ_T0072331.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67896296 67898929 + Ube2k protein_coding retained_intron MGP_C57BL6NJ_T0072332.1 MGP_C57BL6NJ_G0030012.1 mouse_genomes_project 5 67938708 67942258 + Ube2k protein_coding retained_intron MGP_C57BL6NJ_T0001893.1 MGP_C57BL6NJ_G0001786.1 mouse_genomes_project 5 117922636 117923189 + TEC TEC MGP_C57BL6NJ_T0099469.1 MGP_C57BL6NJ_G0037526.1 mouse_genomes_project 5 76209374 76211862 - Gm17207 sense_intronic sense_intronic MGP_C57BL6NJ_T0008487.1 MGP_C57BL6NJ_G0006899.1 mouse_genomes_project 5 119770408 119775431 + Gm42865 lincRNA lincRNA MGP_C57BL6NJ_T0099473.1 MGP_C57BL6NJ_G0037530.1 mouse_genomes_project 5 111955188 111956520 + C230066G23Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0015248.1 MGP_C57BL6NJ_G0013293.1 mouse_genomes_project 5 7808203 7809668 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015542.1 MGP_C57BL6NJ_G0013587.1 mouse_genomes_project 5 130711269 130711808 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075201.1 MGP_C57BL6NJ_G0030578.1 mouse_genomes_project 5 139670591 139678269 - A330070K13Rik protein_coding antisense MGP_C57BL6NJ_T0075202.1 MGP_C57BL6NJ_G0030578.1 mouse_genomes_project 5 139670664 139678270 - MGP_C57BL6NJ_P0075202 A330070K13Rik protein_coding protein_coding MGP_C57BL6NJ_T0010987.1 MGP_C57BL6NJ_G0009072.1 mouse_genomes_project 5 150125148 150125213 - Mir7037 miRNA miRNA MGP_C57BL6NJ_T0101756.1 MGP_C57BL6NJ_G0039802.1 mouse_genomes_project 5 105762707 105762790 - Gm26363 snoRNA snoRNA MGP_C57BL6NJ_T0074258.1 MGP_C57BL6NJ_G0030412.1 mouse_genomes_project 5 123992198 124015581 - MGP_C57BL6NJ_P0074258 Srrm4 protein_coding protein_coding MGP_C57BL6NJ_T0074259.1 MGP_C57BL6NJ_G0030412.1 mouse_genomes_project 5 123992208 124015705 - Srrm4 protein_coding retained_intron MGP_C57BL6NJ_T0074260.1 MGP_C57BL6NJ_G0030412.1 mouse_genomes_project 5 123992209 124165328 - MGP_C57BL6NJ_P0074260 Srrm4 protein_coding protein_coding MGP_C57BL6NJ_T0074261.1 MGP_C57BL6NJ_G0030412.1 mouse_genomes_project 5 124042615 124043394 - Srrm4 protein_coding retained_intron MGP_C57BL6NJ_T0102276.1 MGP_C57BL6NJ_G0040260.1 mouse_genomes_project 5 90475677 90476677 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102277.1 MGP_C57BL6NJ_G0040260.1 mouse_genomes_project 5 90475732 90476816 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0072880.1 MGP_C57BL6NJ_G0030112.1 mouse_genomes_project 5 91760177 91783743 - MGP_C57BL6NJ_P0072880 protein_coding protein_coding MGP_C57BL6NJ_T0015564.1 MGP_C57BL6NJ_G0013609.1 mouse_genomes_project 5 147445495 147445772 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071707.1 MGP_C57BL6NJ_G0029901.1 mouse_genomes_project 5 34796752 34892253 + MGP_C57BL6NJ_P0071707 Grk4 protein_coding protein_coding MGP_C57BL6NJ_T0071708.1 MGP_C57BL6NJ_G0029901.1 mouse_genomes_project 5 34796752 34840898 + MGP_C57BL6NJ_P0071708 Grk4 protein_coding protein_coding MGP_C57BL6NJ_T0071709.1 MGP_C57BL6NJ_G0029901.1 mouse_genomes_project 5 34797348 34813451 + MGP_C57BL6NJ_P0071709 Grk4 protein_coding protein_coding MGP_C57BL6NJ_T0071710.1 MGP_C57BL6NJ_G0029901.1 mouse_genomes_project 5 34849762 34882304 + Grk4 protein_coding processed_transcript MGP_C57BL6NJ_T0071711.1 MGP_C57BL6NJ_G0029901.1 mouse_genomes_project 5 34881409 34892255 + Grk4 protein_coding processed_transcript MGP_C57BL6NJ_T0008527.1 MGP_C57BL6NJ_G0006929.1 mouse_genomes_project 5 127860516 127862227 + Gm43269 lincRNA lincRNA MGP_C57BL6NJ_T0074078.1 MGP_C57BL6NJ_G0030376.1 mouse_genomes_project 5 122118023 122145708 - MGP_C57BL6NJ_P0074078 1500011B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0074080.1 MGP_C57BL6NJ_G0030376.1 mouse_genomes_project 5 122122620 122145677 - MGP_C57BL6NJ_P0074080 1500011B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0075503.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145898198 145908948 + Upk3bl protein_coding processed_transcript MGP_C57BL6NJ_T0075504.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145900897 145908948 + MGP_C57BL6NJ_P0075504 Upk3bl protein_coding protein_coding MGP_C57BL6NJ_T0075505.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145900973 145908943 + MGP_C57BL6NJ_P0075505 Upk3bl protein_coding protein_coding MGP_C57BL6NJ_T0075506.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145900973 145908950 + MGP_C57BL6NJ_P0075506 Upk3bl protein_coding protein_coding MGP_C57BL6NJ_T0075507.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145903757 145908934 + Upk3bl protein_coding processed_transcript MGP_C57BL6NJ_T0075508.1 MGP_C57BL6NJ_G0030629.1 mouse_genomes_project 5 145903830 145908936 + MGP_C57BL6NJ_P0075508 Upk3bl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075235.1 MGP_C57BL6NJ_G0030583.1 mouse_genomes_project 5 143735151 143774185 - MGP_C57BL6NJ_P0075235 Wbscr16 protein_coding protein_coding MGP_C57BL6NJ_T0075236.1 MGP_C57BL6NJ_G0030583.1 mouse_genomes_project 5 143747224 143762767 - Wbscr16 protein_coding retained_intron MGP_C57BL6NJ_T0075237.1 MGP_C57BL6NJ_G0030583.1 mouse_genomes_project 5 143758325 143761734 - Wbscr16 protein_coding retained_intron MGP_C57BL6NJ_T0075700.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147625419 147630580 - MGP_C57BL6NJ_P0075700 Mospd3 protein_coding protein_coding MGP_C57BL6NJ_T0075701.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147625419 147630916 - MGP_C57BL6NJ_P0075701 Mospd3 protein_coding protein_coding MGP_C57BL6NJ_T0075702.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147625929 147630672 - Mospd3 protein_coding processed_transcript MGP_C57BL6NJ_T0075703.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147625981 147630930 - MGP_C57BL6NJ_P0075703 Mospd3 protein_coding protein_coding MGP_C57BL6NJ_T0075704.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147629905 147630596 - MGP_C57BL6NJ_P0075704 Mospd3 protein_coding protein_coding MGP_C57BL6NJ_T0075705.1 MGP_C57BL6NJ_G0030663.1 mouse_genomes_project 5 147629954 147630563 - Mospd3 protein_coding retained_intron MGP_C57BL6NJ_T0072990.1 MGP_C57BL6NJ_G0030146.1 mouse_genomes_project 5 94216468 94275082 + MGP_C57BL6NJ_P0072990 Npffr2 protein_coding protein_coding MGP_C57BL6NJ_T0010934.1 MGP_C57BL6NJ_G0009019.1 mouse_genomes_project 5 68388551 68388625 + Gm25952 miRNA miRNA MGP_C57BL6NJ_T0070876.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23086799 23094363 - Fam126a protein_coding processed_transcript MGP_C57BL6NJ_T0070877.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23086800 23211740 - MGP_C57BL6NJ_P0070877 Fam126a protein_coding protein_coding MGP_C57BL6NJ_T0070878.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23136804 23212118 - MGP_C57BL6NJ_P0070878 Fam126a protein_coding protein_coding MGP_C57BL6NJ_T0070879.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23140351 23212076 - MGP_C57BL6NJ_P0070879 Fam126a protein_coding protein_coding MGP_C57BL6NJ_T0070880.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23140353 23179077 - MGP_C57BL6NJ_P0070880 Fam126a protein_coding protein_coding MGP_C57BL6NJ_T0070881.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23159790 23162917 - Fam126a protein_coding retained_intron MGP_C57BL6NJ_T0070882.1 MGP_C57BL6NJ_G0029764.1 mouse_genomes_project 5 23166725 23211733 - Fam126a protein_coding processed_transcript MGP_C57BL6NJ_T0071845.1 MGP_C57BL6NJ_G0029925.1 mouse_genomes_project 5 37039741 37043006 - MGP_C57BL6NJ_P0071845 protein_coding protein_coding MGP_C57BL6NJ_T0012105.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75100629 75128536 + MGP_C57BL6NJ_P0012105 Atp10d polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012106.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75100629 75201676 + MGP_C57BL6NJ_P0012106 Atp10d polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012107.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75100653 75127672 + Atp10d polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0012108.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75167764 75201676 + Atp10d polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012109.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75183167 75201663 + Atp10d polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012110.1 MGP_C57BL6NJ_G0010161.1 mouse_genomes_project 5 75183167 75201662 + MGP_C57BL6NJ_P0012110 Atp10d polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0015457.1 MGP_C57BL6NJ_G0013502.1 mouse_genomes_project 5 95513435 95513749 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076234.1 MGP_C57BL6NJ_G0030777.1 mouse_genomes_project 5 154988266 154992390 + MGP_C57BL6NJ_P0076234 Bhlha15 protein_coding protein_coding MGP_C57BL6NJ_T0073599.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114678074 114707848 - MGP_C57BL6NJ_P0073599 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0073600.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114689353 114707866 - MGP_C57BL6NJ_P0073600 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0073601.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114697018 114707903 - MGP_C57BL6NJ_P0073601 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0073602.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114698452 114707832 - MGP_C57BL6NJ_P0073602 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0073603.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114704749 114707816 - MGP_C57BL6NJ_P0073603 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0073604.1 MGP_C57BL6NJ_G0030280.1 mouse_genomes_project 5 114705004 114707813 - MGP_C57BL6NJ_P0073604 Tmed5 protein_coding protein_coding MGP_C57BL6NJ_T0008413.1 MGP_C57BL6NJ_G0006853.1 mouse_genomes_project 5 106691288 106694991 - Gm36793 lincRNA lincRNA MGP_C57BL6NJ_T0015535.1 MGP_C57BL6NJ_G0013580.1 mouse_genomes_project 5 124205160 124205817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099456.1 MGP_C57BL6NJ_G0037513.1 mouse_genomes_project 5 2053057 2056177 - Gm43112 sense_intronic sense_intronic MGP_C57BL6NJ_T0076580.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162265040 162304515 - N4bp2l2 protein_coding processed_transcript MGP_C57BL6NJ_T0076581.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162292955 162322584 - MGP_C57BL6NJ_P0076581 N4bp2l2 protein_coding protein_coding MGP_C57BL6NJ_T0076582.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162297719 162305257 - N4bp2l2 protein_coding retained_intron MGP_C57BL6NJ_T0076583.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162299983 162315312 - MGP_C57BL6NJ_P0076583 N4bp2l2 protein_coding protein_coding MGP_C57BL6NJ_T0076584.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162299996 162304789 - N4bp2l2 protein_coding retained_intron MGP_C57BL6NJ_T0076585.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162305205 162322549 - N4bp2l2 protein_coding retained_intron MGP_C57BL6NJ_T0076586.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162316241 162322318 - MGP_C57BL6NJ_P0076586 N4bp2l2 protein_coding protein_coding MGP_C57BL6NJ_T0076587.1 MGP_C57BL6NJ_G0030849.1 mouse_genomes_project 5 162322146 162323155 - N4bp2l2 protein_coding retained_intron MGP_C57BL6NJ_T0099468.1 MGP_C57BL6NJ_G0037525.1 mouse_genomes_project 5 48923249 48925389 + Gm20475 sense_intronic sense_intronic MGP_C57BL6NJ_T0011879.1 MGP_C57BL6NJ_G0009964.1 mouse_genomes_project 5 160766613 160766906 - Gm24105 misc_RNA misc_RNA MGP_C57BL6NJ_T0100463.1 MGP_C57BL6NJ_G0038509.1 mouse_genomes_project 5 90488474 90488644 + Gm24524 snRNA snRNA MGP_C57BL6NJ_T0070914.1 MGP_C57BL6NJ_G0029772.1 mouse_genomes_project 5 23639250 23644540 - MGP_C57BL6NJ_P0070914 Cdk5 protein_coding protein_coding MGP_C57BL6NJ_T0070915.1 MGP_C57BL6NJ_G0029772.1 mouse_genomes_project 5 23640385 23644495 - MGP_C57BL6NJ_P0070915 Cdk5 protein_coding protein_coding MGP_C57BL6NJ_T0070916.1 MGP_C57BL6NJ_G0029772.1 mouse_genomes_project 5 23642008 23643705 - Cdk5 protein_coding retained_intron MGP_C57BL6NJ_T0075773.1 MGP_C57BL6NJ_G0030677.1 mouse_genomes_project 5 147891964 147893068 - Pilrb2 protein_coding retained_intron MGP_C57BL6NJ_T0075776.1 MGP_C57BL6NJ_G0030677.1 mouse_genomes_project 5 147891964 147934412 - MGP_C57BL6NJ_P0075776 Pilrb2 protein_coding protein_coding MGP_C57BL6NJ_T0075778.1 MGP_C57BL6NJ_G0030677.1 mouse_genomes_project 5 147891966 147934412 - MGP_C57BL6NJ_P0075778 Pilrb2 protein_coding protein_coding MGP_C57BL6NJ_T0075781.1 MGP_C57BL6NJ_G0030677.1 mouse_genomes_project 5 147919539 147920161 - MGP_C57BL6NJ_P0075781 Pilrb2 protein_coding protein_coding MGP_C57BL6NJ_T0001684.1 MGP_C57BL6NJ_G0001580.1 mouse_genomes_project 5 46559506 46563965 - TEC TEC MGP_C57BL6NJ_T0004878.1 MGP_C57BL6NJ_G0004216.1 mouse_genomes_project 5 77823050 77858427 + Gm15984 antisense antisense MGP_C57BL6NJ_T0004879.1 MGP_C57BL6NJ_G0004216.1 mouse_genomes_project 5 77823472 77833542 + Gm15984 antisense antisense MGP_C57BL6NJ_T0015421.1 MGP_C57BL6NJ_G0013466.1 mouse_genomes_project 5 79304441 79304793 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008666.1 MGP_C57BL6NJ_G0007024.1 mouse_genomes_project 5 163074058 163139886 - D730045B01Rik lincRNA lincRNA MGP_C57BL6NJ_T0008667.1 MGP_C57BL6NJ_G0007024.1 mouse_genomes_project 5 163075202 163075511 - D730045B01Rik lincRNA lincRNA MGP_C57BL6NJ_T0075744.1 MGP_C57BL6NJ_G0030671.1 mouse_genomes_project 5 147783764 147793938 - MGP_C57BL6NJ_P0075744 Nyap1 protein_coding protein_coding MGP_C57BL6NJ_T0075745.1 MGP_C57BL6NJ_G0030671.1 mouse_genomes_project 5 147784778 147797229 - MGP_C57BL6NJ_P0075745 Nyap1 protein_coding protein_coding MGP_C57BL6NJ_T0075746.1 MGP_C57BL6NJ_G0030671.1 mouse_genomes_project 5 147785547 147796687 - MGP_C57BL6NJ_P0075746 Nyap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0075747.1 MGP_C57BL6NJ_G0030671.1 mouse_genomes_project 5 147786794 147796724 - MGP_C57BL6NJ_P0075747 Nyap1 protein_coding protein_coding MGP_C57BL6NJ_T0004975.1 MGP_C57BL6NJ_G0004280.1 mouse_genomes_project 5 129621480 129635524 + Gm42917 antisense antisense MGP_C57BL6NJ_T0073019.1 MGP_C57BL6NJ_G0030152.1 mouse_genomes_project 5 95232915 95254648 + MGP_C57BL6NJ_P0073019 Afp protein_coding protein_coding MGP_C57BL6NJ_T0073020.1 MGP_C57BL6NJ_G0030152.1 mouse_genomes_project 5 95232917 95239906 + MGP_C57BL6NJ_P0073020 Afp protein_coding protein_coding MGP_C57BL6NJ_T0073021.1 MGP_C57BL6NJ_G0030152.1 mouse_genomes_project 5 95235090 95239956 + Afp protein_coding retained_intron MGP_C57BL6NJ_T0073022.1 MGP_C57BL6NJ_G0030152.1 mouse_genomes_project 5 95245383 95248022 + Afp protein_coding retained_intron MGP_C57BL6NJ_T0073023.1 MGP_C57BL6NJ_G0030152.1 mouse_genomes_project 5 95251283 95254593 + Afp protein_coding retained_intron MGP_C57BL6NJ_T0004888.1 MGP_C57BL6NJ_G0004224.1 mouse_genomes_project 5 92458202 92461658 - Gm42794 antisense antisense MGP_C57BL6NJ_T0001620.1 MGP_C57BL6NJ_G0001518.1 mouse_genomes_project 5 28112987 28114675 + TEC TEC MGP_C57BL6NJ_T0008451.1 MGP_C57BL6NJ_G0006880.1 mouse_genomes_project 5 116746669 116753485 + lincRNA lincRNA MGP_C57BL6NJ_T0004814.1 MGP_C57BL6NJ_G0004164.1 mouse_genomes_project 5 30215448 30231687 + Gm42765 antisense antisense MGP_C57BL6NJ_T0004815.1 MGP_C57BL6NJ_G0004164.1 mouse_genomes_project 5 30215491 30233767 + Gm42765 antisense antisense MGP_C57BL6NJ_T0008552.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134852363 134877061 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0008553.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134855989 134877262 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0008554.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134856001 134870653 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0008555.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134856006 134869308 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0008556.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134856011 134877205 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0008557.1 MGP_C57BL6NJ_G0006944.1 mouse_genomes_project 5 134856025 134870284 + Gm42952 lincRNA lincRNA MGP_C57BL6NJ_T0010982.1 MGP_C57BL6NJ_G0009067.1 mouse_genomes_project 5 148314611 148314695 - Mir25 miRNA miRNA MGP_C57BL6NJ_T0001874.1 MGP_C57BL6NJ_G0001767.1 mouse_genomes_project 5 109250164 109251300 + TEC TEC MGP_C57BL6NJ_T0008623.1 MGP_C57BL6NJ_G0006993.1 mouse_genomes_project 5 158525939 158526483 + Gm27033 lincRNA lincRNA MGP_C57BL6NJ_T0004786.1 MGP_C57BL6NJ_G0004141.1 mouse_genomes_project 5 542499 551235 - Gm17590 antisense antisense MGP_C57BL6NJ_T0004787.1 MGP_C57BL6NJ_G0004141.1 mouse_genomes_project 5 542709 542817 - Gm17590 antisense antisense MGP_C57BL6NJ_T0074757.1 MGP_C57BL6NJ_G0030500.1 mouse_genomes_project 5 132145086 132147032 - MGP_C57BL6NJ_P0074757 Il31 protein_coding protein_coding MGP_C57BL6NJ_T0074758.1 MGP_C57BL6NJ_G0030500.1 mouse_genomes_project 5 132145087 132147526 - MGP_C57BL6NJ_P0074758 Il31 protein_coding protein_coding MGP_C57BL6NJ_T0074759.1 MGP_C57BL6NJ_G0030500.1 mouse_genomes_project 5 132145330 132154384 - MGP_C57BL6NJ_P0074759 Il31 protein_coding protein_coding MGP_C57BL6NJ_T0074760.1 MGP_C57BL6NJ_G0030500.1 mouse_genomes_project 5 132147094 132147455 - Il31 protein_coding processed_transcript MGP_C57BL6NJ_T0008508.1 MGP_C57BL6NJ_G0006914.1 mouse_genomes_project 5 124412523 124416222 + Gm29926 lincRNA lincRNA MGP_C57BL6NJ_T0075174.1 MGP_C57BL6NJ_G0030572.1 mouse_genomes_project 5 139406880 139417796 + MGP_C57BL6NJ_P0075174 Kctd7 protein_coding protein_coding MGP_C57BL6NJ_T0075175.1 MGP_C57BL6NJ_G0030572.1 mouse_genomes_project 5 139406943 139413722 + MGP_C57BL6NJ_P0075175 Kctd7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075176.1 MGP_C57BL6NJ_G0030572.1 mouse_genomes_project 5 139407123 139414484 + MGP_C57BL6NJ_P0075176 Kctd7 protein_coding protein_coding MGP_C57BL6NJ_T0074383.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128632679 128652156 - MGP_C57BL6NJ_P0074383 Rita1 protein_coding protein_coding MGP_C57BL6NJ_T0074384.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128641909 128651454 - MGP_C57BL6NJ_P0074384 Rita1 protein_coding protein_coding MGP_C57BL6NJ_T0074385.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128641910 128645541 - Rita1 protein_coding processed_transcript MGP_C57BL6NJ_T0074386.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128646865 128652406 - Rita1 protein_coding processed_transcript MGP_C57BL6NJ_T0074387.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128648875 128652406 - MGP_C57BL6NJ_P0074387 Rita1 protein_coding protein_coding MGP_C57BL6NJ_T0074388.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128648875 128652406 - MGP_C57BL6NJ_P0074388 Rita1 protein_coding protein_coding MGP_C57BL6NJ_T0074389.1 MGP_C57BL6NJ_G0030438.1 mouse_genomes_project 5 128649728 128652387 - MGP_C57BL6NJ_P0074389 Rita1 protein_coding protein_coding MGP_C57BL6NJ_T0071277.1 MGP_C57BL6NJ_G0029841.1 mouse_genomes_project 5 30927727 30928494 - MGP_C57BL6NJ_P0071277 Ucn protein_coding protein_coding MGP_C57BL6NJ_T0071278.1 MGP_C57BL6NJ_G0029841.1 mouse_genomes_project 5 30927727 30928494 - MGP_C57BL6NJ_P0071278 Ucn protein_coding protein_coding MGP_C57BL6NJ_T0071984.1 MGP_C57BL6NJ_G0029951.1 mouse_genomes_project 5 42689754 42842556 + MGP_C57BL6NJ_P0071984 Gm16223 protein_coding protein_coding MGP_C57BL6NJ_T0070947.1 MGP_C57BL6NJ_G0029775.1 mouse_genomes_project 5 23666465 23668862 - MGP_C57BL6NJ_P0070947 Tmub1 protein_coding protein_coding MGP_C57BL6NJ_T0070948.1 MGP_C57BL6NJ_G0029775.1 mouse_genomes_project 5 23666473 23668633 - MGP_C57BL6NJ_P0070948 Tmub1 protein_coding protein_coding MGP_C57BL6NJ_T0070949.1 MGP_C57BL6NJ_G0029775.1 mouse_genomes_project 5 23666473 23668325 - MGP_C57BL6NJ_P0070949 Tmub1 protein_coding protein_coding MGP_C57BL6NJ_T0070950.1 MGP_C57BL6NJ_G0029775.1 mouse_genomes_project 5 23667056 23668595 - MGP_C57BL6NJ_P0070950 Tmub1 protein_coding protein_coding MGP_C57BL6NJ_T0070951.1 MGP_C57BL6NJ_G0029775.1 mouse_genomes_project 5 23667560 23668799 - MGP_C57BL6NJ_P0070951 Tmub1 protein_coding protein_coding MGP_C57BL6NJ_T0001857.1 MGP_C57BL6NJ_G0001750.1 mouse_genomes_project 5 102312378 102315602 + TEC TEC MGP_C57BL6NJ_T0073110.1 MGP_C57BL6NJ_G0030178.1 mouse_genomes_project 5 97213373 97220106 - MGP_C57BL6NJ_P0073110 Cxcl9 protein_coding protein_coding MGP_C57BL6NJ_T0073111.1 MGP_C57BL6NJ_G0030178.1 mouse_genomes_project 5 97218649 97220105 - Cxcl9 protein_coding retained_intron MGP_C57BL6NJ_T0008436.1 MGP_C57BL6NJ_G0006870.1 mouse_genomes_project 5 112931300 112936508 - Gm26872 lincRNA lincRNA MGP_C57BL6NJ_T0075126.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139053222 139079734 + MGP_C57BL6NJ_P0075126 Sumf2 protein_coding protein_coding MGP_C57BL6NJ_T0075127.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139053247 139070117 + MGP_C57BL6NJ_P0075127 Sumf2 protein_coding protein_coding MGP_C57BL6NJ_T0075128.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139053256 139070207 + Sumf2 protein_coding processed_transcript MGP_C57BL6NJ_T0075129.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139053256 139079116 + MGP_C57BL6NJ_P0075129 Sumf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075130.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139067879 139078482 + Sumf2 protein_coding processed_transcript MGP_C57BL6NJ_T0075131.1 MGP_C57BL6NJ_G0030562.1 mouse_genomes_project 5 139067879 139078482 + Sumf2 protein_coding processed_transcript MGP_C57BL6NJ_T0101748.1 MGP_C57BL6NJ_G0039794.1 mouse_genomes_project 5 92343532 92343655 + Gm25066 snoRNA snoRNA MGP_C57BL6NJ_T0070621.1 MGP_C57BL6NJ_G0029715.1 mouse_genomes_project 5 5975355 6118427 - MGP_C57BL6NJ_P0070621 Rundc3b protein_coding protein_coding MGP_C57BL6NJ_T0070622.1 MGP_C57BL6NJ_G0029715.1 mouse_genomes_project 5 5977288 6118427 - MGP_C57BL6NJ_P0070622 Rundc3b protein_coding protein_coding MGP_C57BL6NJ_T0074875.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132864894 132976101 - MGP_C57BL6NJ_P0074875 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0074876.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132864894 133009481 - MGP_C57BL6NJ_P0074876 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0074877.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132864895 133009172 - MGP_C57BL6NJ_P0074877 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0074878.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132865951 132936383 - MGP_C57BL6NJ_P0074878 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0074879.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132866498 132873336 - Pitpnm2 protein_coding retained_intron MGP_C57BL6NJ_T0074880.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132867278 132868304 - Pitpnm2 protein_coding retained_intron MGP_C57BL6NJ_T0074881.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132873998 132875414 - Pitpnm2 protein_coding retained_intron MGP_C57BL6NJ_T0074882.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132881590 132938948 - MGP_C57BL6NJ_P0074882 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0074883.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132881763 132889047 - Pitpnm2 protein_coding retained_intron MGP_C57BL6NJ_T0074884.1 MGP_C57BL6NJ_G0030519.1 mouse_genomes_project 5 132892391 132934319 - MGP_C57BL6NJ_P0074884 Pitpnm2 protein_coding protein_coding MGP_C57BL6NJ_T0073626.1 MGP_C57BL6NJ_G0030288.1 mouse_genomes_project 5 115151480 115186325 - MGP_C57BL6NJ_P0073626 Cplx1 protein_coding protein_coding MGP_C57BL6NJ_T0073627.1 MGP_C57BL6NJ_G0030288.1 mouse_genomes_project 5 115153185 115186301 - MGP_C57BL6NJ_P0073627 Cplx1 protein_coding protein_coding MGP_C57BL6NJ_T0004944.1 MGP_C57BL6NJ_G0004260.1 mouse_genomes_project 5 122016534 122017101 - Gm42789 antisense antisense MGP_C57BL6NJ_T0001984.1 MGP_C57BL6NJ_G0001876.1 mouse_genomes_project 5 140206528 140209918 - TEC TEC MGP_C57BL6NJ_T0001817.1 MGP_C57BL6NJ_G0001711.1 mouse_genomes_project 5 75497804 75500404 - TEC TEC MGP_C57BL6NJ_T0008558.1 MGP_C57BL6NJ_G0006945.1 mouse_genomes_project 5 135445200 135446326 - Gm42592 lincRNA lincRNA MGP_C57BL6NJ_T0008652.1 MGP_C57BL6NJ_G0007013.1 mouse_genomes_project 5 161192811 161200787 + Gm43153 lincRNA lincRNA MGP_C57BL6NJ_T0001824.1 MGP_C57BL6NJ_G0001717.1 mouse_genomes_project 5 76314875 76315394 - TEC TEC MGP_C57BL6NJ_T0072980.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93560071 93935415 + MGP_C57BL6NJ_P0072980 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072981.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93560514 93561530 + Slc4a4 protein_coding processed_transcript MGP_C57BL6NJ_T0072982.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93560550 93930629 + MGP_C57BL6NJ_P0072982 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072983.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93560552 93931556 + MGP_C57BL6NJ_P0072983 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072984.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93618776 93639199 + MGP_C57BL6NJ_P0072984 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072985.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93713808 93930623 + MGP_C57BL6NJ_P0072985 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072986.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93713919 93728301 + MGP_C57BL6NJ_P0072986 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0072987.1 MGP_C57BL6NJ_G0030144.1 mouse_genomes_project 5 93713934 93802823 + MGP_C57BL6NJ_P0072987 Slc4a4 protein_coding protein_coding MGP_C57BL6NJ_T0015614.1 MGP_C57BL6NJ_G0013659.1 mouse_genomes_project 5 161215192 161215651 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074316.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125764273 125802907 + MGP_C57BL6NJ_P0074316 Tesc protein_coding protein_coding MGP_C57BL6NJ_T0074317.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125764295 125802874 + MGP_C57BL6NJ_P0074317 Tesc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074318.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125764400 125802899 + Tesc protein_coding retained_intron MGP_C57BL6NJ_T0074319.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125772471 125802802 + Tesc protein_coding processed_transcript MGP_C57BL6NJ_T0074320.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125777277 125792156 + Tesc protein_coding processed_transcript MGP_C57BL6NJ_T0074321.1 MGP_C57BL6NJ_G0030422.1 mouse_genomes_project 5 125777278 125783138 + Tesc protein_coding processed_transcript MGP_C57BL6NJ_T0075724.1 MGP_C57BL6NJ_G0030667.1 mouse_genomes_project 5 147665777 147681004 + MGP_C57BL6NJ_P0075724 Gm20605 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075056.1 MGP_C57BL6NJ_G0030550.1 mouse_genomes_project 5 137819006 137866260 + MGP_C57BL6NJ_P0075056 Piwil1 protein_coding protein_coding MGP_C57BL6NJ_T0075057.1 MGP_C57BL6NJ_G0030550.1 mouse_genomes_project 5 137853527 137874447 + MGP_C57BL6NJ_P0075057 Piwil1 protein_coding protein_coding MGP_C57BL6NJ_T0075058.1 MGP_C57BL6NJ_G0030550.1 mouse_genomes_project 5 137854843 137873562 + MGP_C57BL6NJ_P0075058 Piwil1 protein_coding protein_coding MGP_C57BL6NJ_T0071090.1 MGP_C57BL6NJ_G0029808.1 mouse_genomes_project 5 29348981 29349281 - MGP_C57BL6NJ_P0071090 Gm5129 protein_coding protein_coding MGP_C57BL6NJ_T0010963.1 MGP_C57BL6NJ_G0009048.1 mouse_genomes_project 5 128957946 128958072 - Gm22907 miRNA miRNA MGP_C57BL6NJ_T0018599.1 MGP_C57BL6NJ_G0015986.1 mouse_genomes_project 5 31446001 31549722 + Gm43809 processed_transcript processed_transcript MGP_C57BL6NJ_T0018600.1 MGP_C57BL6NJ_G0015986.1 mouse_genomes_project 5 31462712 31549702 + Gm43809 processed_transcript processed_transcript MGP_C57BL6NJ_T0072554.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693756 75813547 - MGP_C57BL6NJ_P0072554 Tec protein_coding protein_coding MGP_C57BL6NJ_T0072555.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693763 75813562 - MGP_C57BL6NJ_P0072555 Tec protein_coding protein_coding MGP_C57BL6NJ_T0072556.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693774 75813499 - MGP_C57BL6NJ_P0072556 Tec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072557.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693778 75813549 - MGP_C57BL6NJ_P0072557 Tec protein_coding protein_coding MGP_C57BL6NJ_T0072558.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693778 75813586 - MGP_C57BL6NJ_P0072558 Tec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072559.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75693778 75725342 - MGP_C57BL6NJ_P0072559 Tec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072560.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75711283 75813552 - MGP_C57BL6NJ_P0072560 Tec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072561.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75762914 75813546 - Tec protein_coding retained_intron MGP_C57BL6NJ_T0072562.1 MGP_C57BL6NJ_G0030048.1 mouse_genomes_project 5 75763218 75784225 - MGP_C57BL6NJ_P0072562 Tec protein_coding protein_coding MGP_C57BL6NJ_T0072298.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703801 67706879 - MGP_C57BL6NJ_P0072298 Rpl9 protein_coding protein_coding MGP_C57BL6NJ_T0072299.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703808 67704359 - Rpl9 protein_coding retained_intron MGP_C57BL6NJ_T0072300.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703808 67706450 - MGP_C57BL6NJ_P0072300 Rpl9 protein_coding protein_coding MGP_C57BL6NJ_T0072301.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703808 67706278 - MGP_C57BL6NJ_P0072301 Rpl9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072302.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703808 67706844 - MGP_C57BL6NJ_P0072302 Rpl9 protein_coding protein_coding MGP_C57BL6NJ_T0072303.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703809 67706843 - Rpl9 protein_coding retained_intron MGP_C57BL6NJ_T0072304.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67703851 67704818 - Rpl9 protein_coding retained_intron MGP_C57BL6NJ_T0072305.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67704121 67706826 - Rpl9 protein_coding retained_intron MGP_C57BL6NJ_T0072306.1 MGP_C57BL6NJ_G0030007.1 mouse_genomes_project 5 67704361 67706436 - Rpl9 protein_coding retained_intron MGP_C57BL6NJ_T0070442.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 668980 710487 + MGP_C57BL6NJ_P0070442 Pex1 protein_coding protein_coding MGP_C57BL6NJ_T0070443.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 668980 710485 + MGP_C57BL6NJ_P0070443 Pex1 protein_coding protein_coding MGP_C57BL6NJ_T0070444.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 669113 678609 + MGP_C57BL6NJ_P0070444 Pex1 protein_coding protein_coding MGP_C57BL6NJ_T0070445.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 669285 695952 + MGP_C57BL6NJ_P0070445 Pex1 protein_coding protein_coding MGP_C57BL6NJ_T0070446.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 677568 678868 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070447.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 678948 692631 + MGP_C57BL6NJ_P0070447 Pex1 protein_coding protein_coding MGP_C57BL6NJ_T0070448.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 682365 690037 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070449.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 690817 696425 + MGP_C57BL6NJ_P0070449 Pex1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070450.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 691690 692677 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070451.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 695986 696389 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070452.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 699124 699762 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070454.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 708425 709166 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070455.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 708869 710216 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0070456.1 MGP_C57BL6NJ_G0029690.1 mouse_genomes_project 5 709405 710073 + Pex1 protein_coding retained_intron MGP_C57BL6NJ_T0001790.1 MGP_C57BL6NJ_G0001684.1 mouse_genomes_project 5 68903519 68905729 - TEC TEC MGP_C57BL6NJ_T0015499.1 MGP_C57BL6NJ_G0013544.1 mouse_genomes_project 5 113907239 113907876 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072660.1 MGP_C57BL6NJ_G0030066.1 mouse_genomes_project 5 78135860 78183691 - MGP_C57BL6NJ_P0072660 Chic2 protein_coding protein_coding MGP_C57BL6NJ_T0072661.1 MGP_C57BL6NJ_G0030066.1 mouse_genomes_project 5 78149052 78183238 - Chic2 protein_coding retained_intron MGP_C57BL6NJ_T0001727.1 MGP_C57BL6NJ_G0001622.1 mouse_genomes_project 5 52966833 52971014 - TEC TEC MGP_C57BL6NJ_T0071279.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30930318 30945293 - MGP_C57BL6NJ_P0071279 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071280.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30930327 30945264 - MGP_C57BL6NJ_P0071280 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071281.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30930760 30945235 - MGP_C57BL6NJ_P0071281 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071282.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30931592 30945270 - MGP_C57BL6NJ_P0071282 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071283.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30931650 30945194 - MGP_C57BL6NJ_P0071283 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071284.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30931675 30945234 - MGP_C57BL6NJ_P0071284 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071285.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30931743 30937209 - MGP_C57BL6NJ_P0071285 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071286.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30931845 30937229 - Mpv17 protein_coding retained_intron MGP_C57BL6NJ_T0071287.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30935242 30945260 - Mpv17 protein_coding retained_intron MGP_C57BL6NJ_T0071288.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30935442 30945263 - MGP_C57BL6NJ_P0071288 Mpv17 protein_coding protein_coding MGP_C57BL6NJ_T0071290.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30936208 30945260 - Mpv17 protein_coding retained_intron MGP_C57BL6NJ_T0071291.1 MGP_C57BL6NJ_G0029842.1 mouse_genomes_project 5 30936444 30944784 - Mpv17 protein_coding retained_intron MGP_C57BL6NJ_T0073183.1 MGP_C57BL6NJ_G0030190.1 mouse_genomes_project 5 98170648 98177611 + MGP_C57BL6NJ_P0073183 2010109A12Rik protein_coding protein_coding MGP_C57BL6NJ_T0073184.1 MGP_C57BL6NJ_G0030190.1 mouse_genomes_project 5 98170663 98171580 + 2010109A12Rik protein_coding retained_intron MGP_C57BL6NJ_T0073054.1 MGP_C57BL6NJ_G0030164.1 mouse_genomes_project 5 95787428 95798209 + MGP_C57BL6NJ_P0073054 Epgn protein_coding protein_coding MGP_C57BL6NJ_T0073055.1 MGP_C57BL6NJ_G0030164.1 mouse_genomes_project 5 95787428 95799211 + MGP_C57BL6NJ_P0073055 Epgn protein_coding protein_coding MGP_C57BL6NJ_T0071252.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30817217 30841818 + MGP_C57BL6NJ_P0071252 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071253.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30817248 30831102 + MGP_C57BL6NJ_P0071253 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071254.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30817365 30841571 + MGP_C57BL6NJ_P0071254 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071255.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30817365 30841571 + MGP_C57BL6NJ_P0071255 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071256.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30817392 30841534 + MGP_C57BL6NJ_P0071256 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071257.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30821346 30822637 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0071258.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30824466 30830307 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0071259.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30829633 30830519 + Cad protein_coding processed_transcript MGP_C57BL6NJ_T0071260.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30833694 30835533 + Cad protein_coding processed_transcript MGP_C57BL6NJ_T0071261.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30833807 30836044 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0071262.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30833893 30836321 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0071263.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30835647 30836919 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0071264.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30837455 30839367 + MGP_C57BL6NJ_P0071264 Cad protein_coding protein_coding MGP_C57BL6NJ_T0071265.1 MGP_C57BL6NJ_G0029837.1 mouse_genomes_project 5 30839151 30840003 + Cad protein_coding retained_intron MGP_C57BL6NJ_T0100472.1 MGP_C57BL6NJ_G0038518.1 mouse_genomes_project 5 109591393 109591564 + Gm25721 snRNA snRNA MGP_C57BL6NJ_T0015337.1 MGP_C57BL6NJ_G0013382.1 mouse_genomes_project 5 37688964 37689444 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015511.1 MGP_C57BL6NJ_G0013556.1 mouse_genomes_project 5 115952263 115954148 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008385.1 MGP_C57BL6NJ_G0006833.1 mouse_genomes_project 5 97740294 97746782 - 4932430I15Rik lincRNA lincRNA MGP_C57BL6NJ_T0010973.1 MGP_C57BL6NJ_G0009058.1 mouse_genomes_project 5 145131195 145131276 - Mir7033 miRNA miRNA MGP_C57BL6NJ_T0075146.1 MGP_C57BL6NJ_G0030567.1 mouse_genomes_project 5 139178132 139223205 + MGP_C57BL6NJ_P0075146 Vkorc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0075147.1 MGP_C57BL6NJ_G0030567.1 mouse_genomes_project 5 139178271 139225151 + MGP_C57BL6NJ_P0075147 Vkorc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0075148.1 MGP_C57BL6NJ_G0030567.1 mouse_genomes_project 5 139178289 139221039 + MGP_C57BL6NJ_P0075148 Vkorc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0075149.1 MGP_C57BL6NJ_G0030567.1 mouse_genomes_project 5 139178336 139220701 + MGP_C57BL6NJ_P0075149 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075150.1 MGP_C57BL6NJ_G0030567.1 mouse_genomes_project 5 139215461 139220940 + MGP_C57BL6NJ_P0075150 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070422.1 MGP_C57BL6NJ_G0029686.1 mouse_genomes_project 5 353161 591119 + MGP_C57BL6NJ_P0070422 Cdk6 protein_coding protein_coding MGP_C57BL6NJ_T0070423.1 MGP_C57BL6NJ_G0029686.1 mouse_genomes_project 5 540587 542819 + Cdk6 protein_coding retained_intron MGP_C57BL6NJ_T0074253.1 MGP_C57BL6NJ_G0030409.1 mouse_genomes_project 5 123544260 123593547 - MGP_C57BL6NJ_P0074253 Tmem233 protein_coding protein_coding MGP_C57BL6NJ_T0101738.1 MGP_C57BL6NJ_G0039784.1 mouse_genomes_project 5 64621601 64621733 - Gm24079 snoRNA snoRNA MGP_C57BL6NJ_T0100449.1 MGP_C57BL6NJ_G0038495.1 mouse_genomes_project 5 72478363 72478489 - Gm26044 snRNA snRNA MGP_C57BL6NJ_T0001829.1 MGP_C57BL6NJ_G0001722.1 mouse_genomes_project 5 77183720 77186948 - TEC TEC MGP_C57BL6NJ_T0075033.1 MGP_C57BL6NJ_G0030545.1 mouse_genomes_project 5 136229031 136571602 + MGP_C57BL6NJ_P0075033 Tmem132c protein_coding protein_coding MGP_C57BL6NJ_T0075034.1 MGP_C57BL6NJ_G0030545.1 mouse_genomes_project 5 136229049 136269460 + Tmem132c protein_coding processed_transcript MGP_C57BL6NJ_T0075035.1 MGP_C57BL6NJ_G0030545.1 mouse_genomes_project 5 136547604 136570675 + Tmem132c protein_coding processed_transcript MGP_C57BL6NJ_T0075036.1 MGP_C57BL6NJ_G0030545.1 mouse_genomes_project 5 136547608 136570675 + Tmem132c protein_coding processed_transcript MGP_C57BL6NJ_T0075037.1 MGP_C57BL6NJ_G0030545.1 mouse_genomes_project 5 136559063 136570295 + MGP_C57BL6NJ_P0075037 Tmem132c protein_coding protein_coding MGP_C57BL6NJ_T0072189.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54459870 54461379 + Smim20 protein_coding retained_intron MGP_C57BL6NJ_T0072190.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54459925 54471201 + MGP_C57BL6NJ_P0072190 Smim20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072191.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54459925 54471201 + MGP_C57BL6NJ_P0072191 Smim20 protein_coding protein_coding MGP_C57BL6NJ_T0072192.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54459964 54471201 + MGP_C57BL6NJ_P0072192 Smim20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072193.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54459977 54462053 + Smim20 protein_coding retained_intron MGP_C57BL6NJ_T0072194.1 MGP_C57BL6NJ_G0029984.1 mouse_genomes_project 5 54469778 54470687 + Smim20 protein_coding retained_intron MGP_C57BL6NJ_T0073778.1 MGP_C57BL6NJ_G0030320.1 mouse_genomes_project 5 117576136 117583182 + MGP_C57BL6NJ_P0073778 Ddx51 protein_coding protein_coding MGP_C57BL6NJ_T0073779.1 MGP_C57BL6NJ_G0030320.1 mouse_genomes_project 5 117576231 117577831 + Ddx51 protein_coding retained_intron MGP_C57BL6NJ_T0073780.1 MGP_C57BL6NJ_G0030320.1 mouse_genomes_project 5 117577822 117578591 + Ddx51 protein_coding retained_intron MGP_C57BL6NJ_T0073781.1 MGP_C57BL6NJ_G0030320.1 mouse_genomes_project 5 117579320 117579796 + Ddx51 protein_coding retained_intron MGP_C57BL6NJ_T0073782.1 MGP_C57BL6NJ_G0030320.1 mouse_genomes_project 5 117579547 117580557 + MGP_C57BL6NJ_P0073782 Ddx51 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008381.1 MGP_C57BL6NJ_G0006829.1 mouse_genomes_project 5 96588206 96594258 - Gm28271 lincRNA lincRNA MGP_C57BL6NJ_T0004979.1 MGP_C57BL6NJ_G0004284.1 mouse_genomes_project 5 130437378 130441769 + Gm3970 antisense antisense MGP_C57BL6NJ_T0073572.1 MGP_C57BL6NJ_G0030276.1 mouse_genomes_project 5 114374105 114375783 + MGP_C57BL6NJ_P0073572 Ube2d2b protein_coding protein_coding MGP_C57BL6NJ_T0008383.1 MGP_C57BL6NJ_G0006831.1 mouse_genomes_project 5 96761974 96763978 - Gm43688 lincRNA lincRNA MGP_C57BL6NJ_T0101766.1 MGP_C57BL6NJ_G0039812.1 mouse_genomes_project 5 139048951 139049082 + Snora15 snoRNA snoRNA MGP_C57BL6NJ_T0075878.1 MGP_C57BL6NJ_G0030700.1 mouse_genomes_project 5 148759639 148788703 - MGP_C57BL6NJ_P0075878 1700123K08Rik protein_coding protein_coding MGP_C57BL6NJ_T0075879.1 MGP_C57BL6NJ_G0030700.1 mouse_genomes_project 5 148759834 148788721 - 1700123K08Rik protein_coding retained_intron MGP_C57BL6NJ_T0075880.1 MGP_C57BL6NJ_G0030700.1 mouse_genomes_project 5 148787288 148788704 - 1700123K08Rik protein_coding retained_intron MGP_C57BL6NJ_T0001619.1 MGP_C57BL6NJ_G0001517.1 mouse_genomes_project 5 27681096 27681461 - TEC TEC MGP_C57BL6NJ_T0071316.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987682 30993346 + MGP_C57BL6NJ_P0071316 Snx17 protein_coding protein_coding MGP_C57BL6NJ_T0071317.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987697 30989890 + MGP_C57BL6NJ_P0071317 Snx17 protein_coding protein_coding MGP_C57BL6NJ_T0071318.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987749 30993340 + MGP_C57BL6NJ_P0071318 Snx17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071319.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987761 30993345 + Snx17 protein_coding retained_intron MGP_C57BL6NJ_T0071320.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987761 30991502 + MGP_C57BL6NJ_P0071320 Snx17 protein_coding protein_coding MGP_C57BL6NJ_T0071321.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30987790 30993346 + MGP_C57BL6NJ_P0071321 Snx17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071322.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30988309 30993589 + Snx17 protein_coding retained_intron MGP_C57BL6NJ_T0071323.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30989298 30990879 + Snx17 protein_coding retained_intron MGP_C57BL6NJ_T0071324.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30989828 30991696 + Snx17 protein_coding retained_intron MGP_C57BL6NJ_T0071325.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30990286 30992156 + Snx17 protein_coding retained_intron MGP_C57BL6NJ_T0071326.1 MGP_C57BL6NJ_G0029846.1 mouse_genomes_project 5 30990494 30992590 + Snx17 protein_coding processed_transcript MGP_C57BL6NJ_T0073933.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120939637 120970823 - MGP_C57BL6NJ_P0073933 Sart3 protein_coding protein_coding MGP_C57BL6NJ_T0073934.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120939639 120968903 - MGP_C57BL6NJ_P0073934 Sart3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073935.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120941869 120942787 - Sart3 protein_coding retained_intron MGP_C57BL6NJ_T0073936.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120942961 120952634 - Sart3 protein_coding processed_transcript MGP_C57BL6NJ_T0073937.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120951425 120951949 - Sart3 protein_coding processed_transcript MGP_C57BL6NJ_T0073938.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120952171 120955406 - Sart3 protein_coding retained_intron MGP_C57BL6NJ_T0073939.1 MGP_C57BL6NJ_G0030352.1 mouse_genomes_project 5 120952598 120958454 - Sart3 protein_coding processed_transcript MGP_C57BL6NJ_T0005028.1 MGP_C57BL6NJ_G0004321.1 mouse_genomes_project 5 148411925 148414544 + 6330418K02Rik antisense antisense MGP_C57BL6NJ_T0005029.1 MGP_C57BL6NJ_G0004321.1 mouse_genomes_project 5 148411936 148414215 + 6330418K02Rik antisense antisense MGP_C57BL6NJ_T0005030.1 MGP_C57BL6NJ_G0004321.1 mouse_genomes_project 5 148411951 148414544 + 6330418K02Rik antisense antisense MGP_C57BL6NJ_T0005031.1 MGP_C57BL6NJ_G0004321.1 mouse_genomes_project 5 148411990 148414112 + 6330418K02Rik antisense antisense MGP_C57BL6NJ_T0005032.1 MGP_C57BL6NJ_G0004321.1 mouse_genomes_project 5 148413426 148413966 + 6330418K02Rik antisense antisense MGP_C57BL6NJ_T0070707.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178007 15199811 + Hgf protein_coding retained_intron MGP_C57BL6NJ_T0070708.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178062 15249275 + MGP_C57BL6NJ_P0070708 Hgf protein_coding protein_coding MGP_C57BL6NJ_T0070709.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178091 15195388 + Hgf protein_coding retained_intron MGP_C57BL6NJ_T0070710.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178263 15195961 + Hgf protein_coding retained_intron MGP_C57BL6NJ_T0070711.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178298 15248467 + MGP_C57BL6NJ_P0070711 Hgf protein_coding protein_coding MGP_C57BL6NJ_T0070712.1 MGP_C57BL6NJ_G0029731.1 mouse_genomes_project 5 15178440 15248171 + MGP_C57BL6NJ_P0070712 Hgf protein_coding protein_coding MGP_C57BL6NJ_T0076253.1 MGP_C57BL6NJ_G0030782.1 mouse_genomes_project 5 155591348 155622752 - MGP_C57BL6NJ_P0076253 Tmem130 protein_coding protein_coding MGP_C57BL6NJ_T0076254.1 MGP_C57BL6NJ_G0030782.1 mouse_genomes_project 5 155613553 155622921 - Tmem130 protein_coding processed_transcript MGP_C57BL6NJ_T0073908.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120398664 120471275 - MGP_C57BL6NJ_P0073908 Sgsm1 protein_coding protein_coding MGP_C57BL6NJ_T0073909.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120398673 120439563 - MGP_C57BL6NJ_P0073909 Sgsm1 protein_coding protein_coding MGP_C57BL6NJ_T0073910.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120413766 120439563 - Sgsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0073911.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120414405 120471266 - Sgsm1 protein_coding processed_transcript MGP_C57BL6NJ_T0073912.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120421966 120471228 - MGP_C57BL6NJ_P0073912 Sgsm1 protein_coding protein_coding MGP_C57BL6NJ_T0073913.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120422579 120471186 - MGP_C57BL6NJ_P0073913 Sgsm1 protein_coding protein_coding MGP_C57BL6NJ_T0073914.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120430206 120439549 - MGP_C57BL6NJ_P0073914 Sgsm1 protein_coding protein_coding MGP_C57BL6NJ_T0073915.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120434848 120438298 - Sgsm1 protein_coding retained_intron MGP_C57BL6NJ_T0073916.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120438571 120441854 - Sgsm1 protein_coding retained_intron MGP_C57BL6NJ_T0073917.1 MGP_C57BL6NJ_G0030346.1 mouse_genomes_project 5 120446031 120471209 - Sgsm1 protein_coding retained_intron MGP_C57BL6NJ_T0073427.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463134 110469067 + MGP_C57BL6NJ_P0073427 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073428.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463134 110469065 + MGP_C57BL6NJ_P0073428 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073429.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463137 110469064 + MGP_C57BL6NJ_P0073429 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073430.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463155 110467559 + MGP_C57BL6NJ_P0073430 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073431.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463158 110467521 + MGP_C57BL6NJ_P0073431 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073432.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110463174 110465727 + MGP_C57BL6NJ_P0073432 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073433.1 MGP_C57BL6NJ_G0030245.1 mouse_genomes_project 5 110464208 110469060 + MGP_C57BL6NJ_P0073433 Spp1 protein_coding protein_coding MGP_C57BL6NJ_T0073159.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97594277 97912902 + MGP_C57BL6NJ_P0073159 Shroom3 protein_coding protein_coding MGP_C57BL6NJ_T0073160.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97594467 97912350 + MGP_C57BL6NJ_P0073160 Shroom3 protein_coding protein_coding MGP_C57BL6NJ_T0073161.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97740294 97746782 + Shroom3 protein_coding processed_transcript MGP_C57BL6NJ_T0073162.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97746763 97776531 + Shroom3 protein_coding processed_transcript MGP_C57BL6NJ_T0073163.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97851032 97912312 + MGP_C57BL6NJ_P0073163 Shroom3 protein_coding protein_coding MGP_C57BL6NJ_T0073164.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97872086 97887126 + MGP_C57BL6NJ_P0073164 Shroom3 protein_coding protein_coding MGP_C57BL6NJ_T0073165.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97885305 97888918 + Shroom3 protein_coding retained_intron MGP_C57BL6NJ_T0073166.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97895454 97896365 + Shroom3 protein_coding retained_intron MGP_C57BL6NJ_T0073167.1 MGP_C57BL6NJ_G0030186.1 mouse_genomes_project 5 97909601 97912378 + Shroom3 protein_coding retained_intron MGP_C57BL6NJ_T0001931.1 MGP_C57BL6NJ_G0001824.1 mouse_genomes_project 5 126830274 126832710 - TEC TEC MGP_C57BL6NJ_T0001629.1 MGP_C57BL6NJ_G0001526.1 mouse_genomes_project 5 31310900 31312288 + TEC TEC MGP_C57BL6NJ_T0004825.1 MGP_C57BL6NJ_G0004173.1 mouse_genomes_project 5 34274674 34275675 + Gm42846 antisense antisense MGP_C57BL6NJ_T0004820.1 MGP_C57BL6NJ_G0004168.1 mouse_genomes_project 5 31872513 31877400 - Gm17130 antisense antisense MGP_C57BL6NJ_T0001793.1 MGP_C57BL6NJ_G0001687.1 mouse_genomes_project 5 69009744 69012110 - TEC TEC MGP_C57BL6NJ_T0073236.1 MGP_C57BL6NJ_G0030205.1 mouse_genomes_project 5 103880843 104395362 + MGP_C57BL6NJ_P0073236 1700007G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0073237.1 MGP_C57BL6NJ_G0030205.1 mouse_genomes_project 5 103880890 103897536 + 1700007G11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0073238.1 MGP_C57BL6NJ_G0030205.1 mouse_genomes_project 5 103880895 103897931 + 1700007G11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0073239.1 MGP_C57BL6NJ_G0030205.1 mouse_genomes_project 5 103880909 104395390 + MGP_C57BL6NJ_P0073239 1700007G11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005001.1 MGP_C57BL6NJ_G0004299.1 mouse_genomes_project 5 136244075 136262440 - Tmem132cos antisense antisense MGP_C57BL6NJ_T0005002.1 MGP_C57BL6NJ_G0004299.1 mouse_genomes_project 5 136244091 136262400 - Tmem132cos antisense antisense MGP_C57BL6NJ_T0005003.1 MGP_C57BL6NJ_G0004299.1 mouse_genomes_project 5 136244153 136262403 - Tmem132cos antisense antisense MGP_C57BL6NJ_T0073852.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119407344 119409966 - Srrd protein_coding processed_transcript MGP_C57BL6NJ_T0073853.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119407344 119412964 - MGP_C57BL6NJ_P0073853 Srrd protein_coding protein_coding MGP_C57BL6NJ_T0073854.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119407344 119412984 - MGP_C57BL6NJ_P0073854 Srrd protein_coding protein_coding MGP_C57BL6NJ_T0073855.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119407861 119409876 - Srrd protein_coding retained_intron MGP_C57BL6NJ_T0073856.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119407924 119412962 - Srrd protein_coding processed_transcript MGP_C57BL6NJ_T0073857.1 MGP_C57BL6NJ_G0030334.1 mouse_genomes_project 5 119409662 119410163 - Srrd protein_coding processed_transcript MGP_C57BL6NJ_T0103204.1 MGP_C57BL6NJ_G0040998.1 mouse_genomes_project 5 91826507 91922434 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0071535.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33664672 33695037 - MGP_C57BL6NJ_P0071535 Fam53a protein_coding protein_coding MGP_C57BL6NJ_T0071536.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33664681 33694314 - MGP_C57BL6NJ_P0071536 Fam53a protein_coding protein_coding MGP_C57BL6NJ_T0071537.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33664681 33695024 - MGP_C57BL6NJ_P0071537 Fam53a protein_coding protein_coding MGP_C57BL6NJ_T0071538.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33664681 33694990 - MGP_C57BL6NJ_P0071538 Fam53a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071539.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33672540 33694985 - MGP_C57BL6NJ_P0071539 Fam53a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071540.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33672713 33695001 - MGP_C57BL6NJ_P0071540 Fam53a protein_coding protein_coding MGP_C57BL6NJ_T0071541.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33674785 33694464 - MGP_C57BL6NJ_P0071541 Fam53a protein_coding protein_coding MGP_C57BL6NJ_T0071542.1 MGP_C57BL6NJ_G0029878.1 mouse_genomes_project 5 33680180 33695007 - Fam53a protein_coding processed_transcript MGP_C57BL6NJ_T0004871.1 MGP_C57BL6NJ_G0004210.1 mouse_genomes_project 5 70423787 70492764 + Gm15477 antisense antisense MGP_C57BL6NJ_T0004872.1 MGP_C57BL6NJ_G0004210.1 mouse_genomes_project 5 70423857 70488228 + Gm15477 antisense antisense MGP_C57BL6NJ_T0008321.1 MGP_C57BL6NJ_G0006782.1 mouse_genomes_project 5 61837654 61858549 - 4933402J10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008322.1 MGP_C57BL6NJ_G0006782.1 mouse_genomes_project 5 61837659 61858543 - 4933402J10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008446.1 MGP_C57BL6NJ_G0006879.1 mouse_genomes_project 5 114977231 114979142 + Gm10419 lincRNA lincRNA MGP_C57BL6NJ_T0008447.1 MGP_C57BL6NJ_G0006879.1 mouse_genomes_project 5 114977253 114982270 + Gm10419 lincRNA lincRNA MGP_C57BL6NJ_T0008448.1 MGP_C57BL6NJ_G0006879.1 mouse_genomes_project 5 114977698 114985336 + Gm10419 lincRNA lincRNA MGP_C57BL6NJ_T0008449.1 MGP_C57BL6NJ_G0006879.1 mouse_genomes_project 5 114979320 114987702 + Gm10419 lincRNA lincRNA MGP_C57BL6NJ_T0008450.1 MGP_C57BL6NJ_G0006879.1 mouse_genomes_project 5 114980324 114982271 + Gm10419 lincRNA lincRNA MGP_C57BL6NJ_T0001756.1 MGP_C57BL6NJ_G0001651.1 mouse_genomes_project 5 60843182 60845599 + TEC TEC MGP_C57BL6NJ_T0011878.1 MGP_C57BL6NJ_G0009963.1 mouse_genomes_project 5 150224915 150225236 + Gm24146 misc_RNA misc_RNA MGP_C57BL6NJ_T0072546.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629755 75690814 - MGP_C57BL6NJ_P0072546 Txk protein_coding protein_coding MGP_C57BL6NJ_T0072547.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629755 75671929 - MGP_C57BL6NJ_P0072547 Txk protein_coding protein_coding MGP_C57BL6NJ_T0072548.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629755 75690818 - MGP_C57BL6NJ_P0072548 Txk protein_coding protein_coding MGP_C57BL6NJ_T0072549.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629757 75690814 - MGP_C57BL6NJ_P0072549 Txk protein_coding protein_coding MGP_C57BL6NJ_T0072550.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629763 75671233 - Txk protein_coding processed_transcript MGP_C57BL6NJ_T0072551.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75629763 75671233 - Txk protein_coding processed_transcript MGP_C57BL6NJ_T0072552.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75637364 75690815 - Txk protein_coding retained_intron MGP_C57BL6NJ_T0072553.1 MGP_C57BL6NJ_G0030047.1 mouse_genomes_project 5 75686520 75690811 - Txk protein_coding retained_intron MGP_C57BL6NJ_T0075842.1 MGP_C57BL6NJ_G0030692.1 mouse_genomes_project 5 148403355 148407270 + MGP_C57BL6NJ_P0075842 Lamtor4 protein_coding protein_coding MGP_C57BL6NJ_T0075843.1 MGP_C57BL6NJ_G0030692.1 mouse_genomes_project 5 148403704 148407273 + Lamtor4 protein_coding processed_transcript MGP_C57BL6NJ_T0008637.1 MGP_C57BL6NJ_G0007005.1 mouse_genomes_project 5 160495183 160500996 + Gm15408 lincRNA lincRNA MGP_C57BL6NJ_T0004889.1 MGP_C57BL6NJ_G0004225.1 mouse_genomes_project 5 92531018 92603603 - 1700066N21Rik antisense antisense MGP_C57BL6NJ_T0001789.1 MGP_C57BL6NJ_G0001683.1 mouse_genomes_project 5 68816777 68818110 - TEC TEC MGP_C57BL6NJ_T0008365.1 MGP_C57BL6NJ_G0006816.1 mouse_genomes_project 5 80811971 80853371 + Gm34728 lincRNA lincRNA MGP_C57BL6NJ_T0100425.1 MGP_C57BL6NJ_G0038471.1 mouse_genomes_project 5 19114267 19114367 + Gm22755 snRNA snRNA MGP_C57BL6NJ_T0070751.1 MGP_C57BL6NJ_G0029742.1 mouse_genomes_project 5 19781815 19844849 - MGP_C57BL6NJ_P0070751 Rsbn1l protein_coding protein_coding MGP_C57BL6NJ_T0070752.1 MGP_C57BL6NJ_G0029742.1 mouse_genomes_project 5 19784378 19849420 - MGP_C57BL6NJ_P0070752 Rsbn1l protein_coding protein_coding MGP_C57BL6NJ_T0070753.1 MGP_C57BL6NJ_G0029742.1 mouse_genomes_project 5 19811056 19813345 - Rsbn1l protein_coding retained_intron MGP_C57BL6NJ_T0070754.1 MGP_C57BL6NJ_G0029742.1 mouse_genomes_project 5 19811087 19837171 - MGP_C57BL6NJ_P0070754 Rsbn1l protein_coding protein_coding MGP_C57BL6NJ_T0101761.1 MGP_C57BL6NJ_G0039807.1 mouse_genomes_project 5 117223185 117223337 + Gm26277 snoRNA snoRNA MGP_C57BL6NJ_T0008226.1 MGP_C57BL6NJ_G0006717.1 mouse_genomes_project 5 21420848 21424683 - Gm43657 lincRNA lincRNA MGP_C57BL6NJ_T0004824.1 MGP_C57BL6NJ_G0004172.1 mouse_genomes_project 5 34212734 34230796 + 4930557J02Rik antisense antisense MGP_C57BL6NJ_T0015578.1 MGP_C57BL6NJ_G0013623.1 mouse_genomes_project 5 150370598 150371094 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005027.1 MGP_C57BL6NJ_G0004320.1 mouse_genomes_project 5 147933568 147934024 + Gm43495 antisense antisense MGP_C57BL6NJ_T0074837.1 MGP_C57BL6NJ_G0030512.1 mouse_genomes_project 5 132647904 132658824 + MGP_C57BL6NJ_P0074837 Gm43518 protein_coding protein_coding MGP_C57BL6NJ_T0075024.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134326269 134379231 + MGP_C57BL6NJ_P0075024 Aacs protein_coding protein_coding MGP_C57BL6NJ_T0075025.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134362922 134374558 + Aacs protein_coding retained_intron MGP_C57BL6NJ_T0075026.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134371313 134373717 + Aacs protein_coding retained_intron MGP_C57BL6NJ_T0075027.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134374519 134375022 + Aacs protein_coding processed_transcript MGP_C57BL6NJ_T0075028.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134376017 134376815 + Aacs protein_coding processed_transcript MGP_C57BL6NJ_T0075029.1 MGP_C57BL6NJ_G0030543.1 mouse_genomes_project 5 134377063 134378176 + Aacs protein_coding processed_transcript MGP_C57BL6NJ_T0075030.1 MGP_C57BL6NJ_G0030544.1 mouse_genomes_project 5 134396581 134496367 + MGP_C57BL6NJ_P0075030 Tmem132b protein_coding protein_coding MGP_C57BL6NJ_T0075031.1 MGP_C57BL6NJ_G0030544.1 mouse_genomes_project 5 134397224 134671003 + MGP_C57BL6NJ_P0075031 Tmem132b protein_coding protein_coding MGP_C57BL6NJ_T0075032.1 MGP_C57BL6NJ_G0030544.1 mouse_genomes_project 5 134496074 134577533 + Tmem132b protein_coding retained_intron MGP_C57BL6NJ_T0072418.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69243551 69503223 + Limch1 protein_coding retained_intron MGP_C57BL6NJ_T0072419.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69243591 69246129 + Limch1 protein_coding retained_intron MGP_C57BL6NJ_T0072420.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69243607 69581289 + MGP_C57BL6NJ_P0072420 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072421.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69243613 69480749 + MGP_C57BL6NJ_P0072421 Limch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072422.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69243634 69582379 + MGP_C57BL6NJ_P0072422 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072423.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69406202 69497714 + MGP_C57BL6NJ_P0072423 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072424.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69496565 69579906 + Limch1 protein_coding processed_transcript MGP_C57BL6NJ_T0072425.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69496976 69582370 + MGP_C57BL6NJ_P0072425 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072426.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69497125 69562342 + Limch1 protein_coding retained_intron MGP_C57BL6NJ_T0072427.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69497137 69527304 + MGP_C57BL6NJ_P0072427 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072428.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69497210 69503476 + Limch1 protein_coding retained_intron MGP_C57BL6NJ_T0072429.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69497521 69527334 + MGP_C57BL6NJ_P0072429 Limch1 protein_coding protein_coding MGP_C57BL6NJ_T0072430.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69505578 69527780 + Limch1 protein_coding processed_transcript MGP_C57BL6NJ_T0072431.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69525630 69527885 + Limch1 protein_coding retained_intron MGP_C57BL6NJ_T0072432.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69569557 69579858 + Limch1 protein_coding processed_transcript MGP_C57BL6NJ_T0072433.1 MGP_C57BL6NJ_G0030022.1 mouse_genomes_project 5 69569612 69579853 + MGP_C57BL6NJ_P0072433 Limch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100481.1 MGP_C57BL6NJ_G0038527.1 mouse_genomes_project 5 121138530 121138611 - Gm22056 snRNA snRNA MGP_C57BL6NJ_T0074764.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132185194 132199038 - MGP_C57BL6NJ_P0074764 Diablo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074765.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132185571 132200325 - MGP_C57BL6NJ_P0074765 Diablo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074766.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132186000 132199016 - MGP_C57BL6NJ_P0074766 Diablo protein_coding protein_coding MGP_C57BL6NJ_T0074767.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132189292 132199032 - MGP_C57BL6NJ_P0074767 Diablo protein_coding protein_coding MGP_C57BL6NJ_T0074768.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132189753 132199029 - MGP_C57BL6NJ_P0074768 Diablo protein_coding protein_coding MGP_C57BL6NJ_T0074769.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132191075 132199029 - MGP_C57BL6NJ_P0074769 Diablo protein_coding protein_coding MGP_C57BL6NJ_T0074770.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132191425 132198387 - Diablo protein_coding retained_intron MGP_C57BL6NJ_T0074771.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132191526 132194244 - Diablo protein_coding retained_intron MGP_C57BL6NJ_T0074772.1 MGP_C57BL6NJ_G0030503.1 mouse_genomes_project 5 132199393 132200384 - Diablo protein_coding processed_transcript MGP_C57BL6NJ_T0015310.1 MGP_C57BL6NJ_G0013355.1 mouse_genomes_project 5 29295593 29295885 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008542.1 MGP_C57BL6NJ_G0006936.1 mouse_genomes_project 5 131718982 131721646 + 4932422M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0001845.1 MGP_C57BL6NJ_G0001738.1 mouse_genomes_project 5 91833973 91834980 + TEC TEC MGP_C57BL6NJ_T0075081.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138718484 138794808 + MGP_C57BL6NJ_P0075081 Sfswap protein_coding protein_coding MGP_C57BL6NJ_T0075082.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138718503 138793072 + MGP_C57BL6NJ_P0075082 Sfswap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075083.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138718509 138721907 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075084.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138718514 138794805 + Sfswap protein_coding processed_transcript MGP_C57BL6NJ_T0075085.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138718712 138721645 + MGP_C57BL6NJ_P0075085 Sfswap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075086.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138719657 138720312 + Sfswap protein_coding TEC MGP_C57BL6NJ_T0075087.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138720422 138721398 + Sfswap protein_coding processed_transcript MGP_C57BL6NJ_T0075088.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138721237 138722152 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075089.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138721359 138794802 + MGP_C57BL6NJ_P0075089 Sfswap protein_coding unknown_likely_coding MGP_C57BL6NJ_T0075090.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138721604 138733246 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075091.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138763842 138773210 + MGP_C57BL6NJ_P0075091 Sfswap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075092.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138771288 138794805 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075093.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138773125 138781847 + Sfswap protein_coding processed_transcript MGP_C57BL6NJ_T0075094.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138782506 138794808 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075095.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138782847 138793438 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0075096.1 MGP_C57BL6NJ_G0030555.1 mouse_genomes_project 5 138794140 138794808 + Sfswap protein_coding retained_intron MGP_C57BL6NJ_T0072943.1 MGP_C57BL6NJ_G0030130.1 mouse_genomes_project 5 92628568 92638302 + MGP_C57BL6NJ_P0072943 Smr3a protein_coding protein_coding MGP_C57BL6NJ_T0072944.1 MGP_C57BL6NJ_G0030130.1 mouse_genomes_project 5 92628572 92638305 + MGP_C57BL6NJ_P0072944 Smr3a protein_coding protein_coding MGP_C57BL6NJ_T0008532.1 MGP_C57BL6NJ_G0006933.1 mouse_genomes_project 5 131613540 131842483 - lincRNA lincRNA MGP_C57BL6NJ_T0015527.1 MGP_C57BL6NJ_G0013572.1 mouse_genomes_project 5 122161461 122166479 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073919.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120677113 120679922 + Wscd2 protein_coding retained_intron MGP_C57BL6NJ_T0073920.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120677227 120776631 + MGP_C57BL6NJ_P0073920 Wscd2 protein_coding protein_coding MGP_C57BL6NJ_T0073921.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120677532 120741295 + Wscd2 protein_coding retained_intron MGP_C57BL6NJ_T0073922.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120736695 120743220 + Wscd2 protein_coding retained_intron MGP_C57BL6NJ_T0073923.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120757643 120776624 + Wscd2 protein_coding processed_transcript MGP_C57BL6NJ_T0073924.1 MGP_C57BL6NJ_G0030348.1 mouse_genomes_project 5 120765476 120768560 + Wscd2 protein_coding processed_transcript MGP_C57BL6NJ_T0001794.1 MGP_C57BL6NJ_G0001688.1 mouse_genomes_project 5 69073825 69076897 - TEC TEC MGP_C57BL6NJ_T0075539.1 MGP_C57BL6NJ_G0030634.1 mouse_genomes_project 5 146008029 146032857 - MGP_C57BL6NJ_P0075539 Orai2 protein_coding protein_coding MGP_C57BL6NJ_T0075540.1 MGP_C57BL6NJ_G0030634.1 mouse_genomes_project 5 146008034 146032772 - MGP_C57BL6NJ_P0075540 Orai2 protein_coding protein_coding MGP_C57BL6NJ_T0075541.1 MGP_C57BL6NJ_G0030634.1 mouse_genomes_project 5 146014459 146032778 - MGP_C57BL6NJ_P0075541 Orai2 protein_coding protein_coding MGP_C57BL6NJ_T0075542.1 MGP_C57BL6NJ_G0030634.1 mouse_genomes_project 5 146028368 146032777 - Orai2 protein_coding retained_intron MGP_C57BL6NJ_T0008469.1 MGP_C57BL6NJ_G0006889.1 mouse_genomes_project 5 118748917 118755335 + Gm16019 lincRNA lincRNA MGP_C57BL6NJ_T0100464.1 MGP_C57BL6NJ_G0038510.1 mouse_genomes_project 5 90659100 90659207 - Gm25473 snRNA snRNA MGP_C57BL6NJ_T0015495.1 MGP_C57BL6NJ_G0013540.1 mouse_genomes_project 5 113080369 113081111 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008547.1 MGP_C57BL6NJ_G0006940.1 mouse_genomes_project 5 134063767 134103473 - Gm42637 lincRNA lincRNA MGP_C57BL6NJ_T0004803.1 MGP_C57BL6NJ_G0004155.1 mouse_genomes_project 5 21354922 21356599 + Gm16110 antisense antisense MGP_C57BL6NJ_T0015351.1 MGP_C57BL6NJ_G0013396.1 mouse_genomes_project 5 46458615 46459240 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074652.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131259796 131312991 - MGP_C57BL6NJ_P0074652 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074653.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131263668 131284540 - MGP_C57BL6NJ_P0074653 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074654.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131264292 131274557 - MGP_C57BL6NJ_P0074654 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074655.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131264539 131312940 - MGP_C57BL6NJ_P0074655 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074656.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131271083 131313008 - Camkk2 protein_coding retained_intron MGP_C57BL6NJ_T0074657.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131276907 131294583 - MGP_C57BL6NJ_P0074657 Camkk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074658.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131278530 131312944 - Camkk2 protein_coding processed_transcript MGP_C57BL6NJ_T0074659.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131284505 131312890 - MGP_C57BL6NJ_P0074659 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074660.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131286976 131312934 - MGP_C57BL6NJ_P0074660 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0074661.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131288243 131313018 - Camkk2 protein_coding retained_intron MGP_C57BL6NJ_T0074662.1 MGP_C57BL6NJ_G0030486.1 mouse_genomes_project 5 131294723 131312924 - MGP_C57BL6NJ_P0074662 Camkk2 protein_coding protein_coding MGP_C57BL6NJ_T0075018.1 MGP_C57BL6NJ_G0030541.1 mouse_genomes_project 5 134260018 134280230 - MGP_C57BL6NJ_P0075018 Dhx37 protein_coding protein_coding MGP_C57BL6NJ_T0075019.1 MGP_C57BL6NJ_G0030541.1 mouse_genomes_project 5 134260910 134262020 - MGP_C57BL6NJ_P0075019 Dhx37 protein_coding protein_coding MGP_C57BL6NJ_T0075020.1 MGP_C57BL6NJ_G0030541.1 mouse_genomes_project 5 134262422 134264972 - Dhx37 protein_coding retained_intron MGP_C57BL6NJ_T0075021.1 MGP_C57BL6NJ_G0030541.1 mouse_genomes_project 5 134269685 134272832 - MGP_C57BL6NJ_P0075021 Dhx37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072860.1 MGP_C57BL6NJ_G0030104.1 mouse_genomes_project 5 91150271 91192002 - MGP_C57BL6NJ_P0072860 Tmprss11e protein_coding protein_coding MGP_C57BL6NJ_T0008503.1 MGP_C57BL6NJ_G0006909.1 mouse_genomes_project 5 123834733 123836948 + Gm13839 lincRNA lincRNA MGP_C57BL6NJ_T0072147.1 MGP_C57BL6NJ_G0029975.1 mouse_genomes_project 5 53472654 53480341 + MGP_C57BL6NJ_P0072147 Sod3 protein_coding protein_coding MGP_C57BL6NJ_T0074324.1 MGP_C57BL6NJ_G0030424.1 mouse_genomes_project 5 125919825 125944840 + Hrk protein_coding processed_transcript MGP_C57BL6NJ_T0074325.1 MGP_C57BL6NJ_G0030424.1 mouse_genomes_project 5 125928122 125949484 + MGP_C57BL6NJ_P0074325 Hrk protein_coding protein_coding MGP_C57BL6NJ_T0004938.1 MGP_C57BL6NJ_G0004257.1 mouse_genomes_project 5 119897584 119905994 + 1700095B10Rik antisense antisense MGP_C57BL6NJ_T0004939.1 MGP_C57BL6NJ_G0004257.1 mouse_genomes_project 5 119897592 119899984 + 1700095B10Rik antisense antisense MGP_C57BL6NJ_T0004940.1 MGP_C57BL6NJ_G0004257.1 mouse_genomes_project 5 119897601 119905942 + 1700095B10Rik antisense antisense MGP_C57BL6NJ_T0004941.1 MGP_C57BL6NJ_G0004257.1 mouse_genomes_project 5 119897624 119900235 + 1700095B10Rik antisense antisense MGP_C57BL6NJ_T0004838.1 MGP_C57BL6NJ_G0004185.1 mouse_genomes_project 5 43806876 43890038 - Gm7854 antisense antisense MGP_C57BL6NJ_T0004839.1 MGP_C57BL6NJ_G0004185.1 mouse_genomes_project 5 43806876 43890408 - Gm7854 antisense antisense MGP_C57BL6NJ_T0004840.1 MGP_C57BL6NJ_G0004185.1 mouse_genomes_project 5 43890054 43890405 - Gm7854 antisense antisense MGP_C57BL6NJ_T0075799.1 MGP_C57BL6NJ_G0030684.1 mouse_genomes_project 5 148287056 148304464 - MGP_C57BL6NJ_P0075799 Zfp113 protein_coding protein_coding MGP_C57BL6NJ_T0075800.1 MGP_C57BL6NJ_G0030684.1 mouse_genomes_project 5 148294341 148301619 - MGP_C57BL6NJ_P0075800 Zfp113 protein_coding protein_coding MGP_C57BL6NJ_T0075801.1 MGP_C57BL6NJ_G0030684.1 mouse_genomes_project 5 148299282 148304420 - Zfp113 protein_coding retained_intron MGP_C57BL6NJ_T0075802.1 MGP_C57BL6NJ_G0030684.1 mouse_genomes_project 5 148299690 148304424 - MGP_C57BL6NJ_P0075802 Zfp113 protein_coding protein_coding MGP_C57BL6NJ_T0070716.1 MGP_C57BL6NJ_G0029735.1 mouse_genomes_project 5 16256624 16415451 + MGP_C57BL6NJ_P0070716 Sema3c protein_coding protein_coding MGP_C57BL6NJ_T0070717.1 MGP_C57BL6NJ_G0029735.1 mouse_genomes_project 5 16256992 16367300 + MGP_C57BL6NJ_P0070717 Sema3c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070718.1 MGP_C57BL6NJ_G0029735.1 mouse_genomes_project 5 16257109 16260522 + Sema3c protein_coding retained_intron MGP_C57BL6NJ_T0070719.1 MGP_C57BL6NJ_G0029735.1 mouse_genomes_project 5 16257242 16359566 + MGP_C57BL6NJ_P0070719 Sema3c protein_coding protein_coding MGP_C57BL6NJ_T0070720.1 MGP_C57BL6NJ_G0029735.1 mouse_genomes_project 5 16377039 16415448 + Sema3c protein_coding retained_intron MGP_C57BL6NJ_T0015259.1 MGP_C57BL6NJ_G0013304.1 mouse_genomes_project 5 14966991 14967775 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071543.1 MGP_C57BL6NJ_G0029879.1 mouse_genomes_project 5 33695326 33697494 + MGP_C57BL6NJ_P0071543 Gm9903 protein_coding protein_coding MGP_C57BL6NJ_T0001815.1 MGP_C57BL6NJ_G0001709.1 mouse_genomes_project 5 72261717 72262043 - TEC TEC MGP_C57BL6NJ_T0015572.1 MGP_C57BL6NJ_G0013617.1 mouse_genomes_project 5 148251670 148251872 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070897.1 MGP_C57BL6NJ_G0029769.1 mouse_genomes_project 5 23602156 23612405 - MGP_C57BL6NJ_P0070897 Atg9b protein_coding protein_coding MGP_C57BL6NJ_T0070898.1 MGP_C57BL6NJ_G0029769.1 mouse_genomes_project 5 23602595 23610897 - Atg9b protein_coding processed_transcript MGP_C57BL6NJ_T0070899.1 MGP_C57BL6NJ_G0029769.1 mouse_genomes_project 5 23605080 23605942 - Atg9b protein_coding processed_transcript MGP_C57BL6NJ_T0005007.1 MGP_C57BL6NJ_G0004303.1 mouse_genomes_project 5 141013207 141022506 + 2810432F15Rik antisense antisense MGP_C57BL6NJ_T0075232.1 MGP_C57BL6NJ_G0030582.1 mouse_genomes_project 5 143682143 143731441 + MGP_C57BL6NJ_P0075232 Gatsl2 protein_coding protein_coding MGP_C57BL6NJ_T0075233.1 MGP_C57BL6NJ_G0030582.1 mouse_genomes_project 5 143682438 143731428 + Gatsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0075234.1 MGP_C57BL6NJ_G0030582.1 mouse_genomes_project 5 143722023 143724612 + Gatsl2 protein_coding retained_intron MGP_C57BL6NJ_T0073821.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 117820855 118260782 + MGP_C57BL6NJ_P0073821 Ttc28 protein_coding protein_coding MGP_C57BL6NJ_T0073822.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 117820855 118260781 + MGP_C57BL6NJ_P0073822 Ttc28 protein_coding protein_coding MGP_C57BL6NJ_T0073823.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 117820874 117857190 + Ttc28 protein_coding processed_transcript MGP_C57BL6NJ_T0073824.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 118190778 118194736 + Ttc28 protein_coding retained_intron MGP_C57BL6NJ_T0073825.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 118198708 118206413 + Ttc28 protein_coding processed_transcript MGP_C57BL6NJ_T0073826.1 MGP_C57BL6NJ_G0030326.1 mouse_genomes_project 5 118203263 118235524 + Ttc28 protein_coding retained_intron MGP_C57BL6NJ_T0002015.1 MGP_C57BL6NJ_G0001906.1 mouse_genomes_project 5 143868176 143872563 - TEC TEC MGP_C57BL6NJ_T0010988.1 MGP_C57BL6NJ_G0009073.1 mouse_genomes_project 5 150884845 150884916 + Mir7038 miRNA miRNA MGP_C57BL6NJ_T0001682.1 MGP_C57BL6NJ_G0001578.1 mouse_genomes_project 5 46468835 46469842 - TEC TEC MGP_C57BL6NJ_T0072974.1 MGP_C57BL6NJ_G0030142.1 mouse_genomes_project 5 93369552 93399074 + Mob1b protein_coding retained_intron MGP_C57BL6NJ_T0072975.1 MGP_C57BL6NJ_G0030142.1 mouse_genomes_project 5 93369552 93421122 + MGP_C57BL6NJ_P0072975 Mob1b protein_coding protein_coding MGP_C57BL6NJ_T0072976.1 MGP_C57BL6NJ_G0030142.1 mouse_genomes_project 5 93369568 93409992 + MGP_C57BL6NJ_P0072976 Mob1b protein_coding protein_coding MGP_C57BL6NJ_T0072977.1 MGP_C57BL6NJ_G0030142.1 mouse_genomes_project 5 93369674 93399789 + Mob1b protein_coding retained_intron MGP_C57BL6NJ_T0073315.1 MGP_C57BL6NJ_G0030219.1 mouse_genomes_project 5 106289236 106309155 - MGP_C57BL6NJ_P0073315 Plac8 protein_coding protein_coding MGP_C57BL6NJ_T0073316.1 MGP_C57BL6NJ_G0030219.1 mouse_genomes_project 5 106289237 106298292 - MGP_C57BL6NJ_P0073316 Plac8 protein_coding protein_coding MGP_C57BL6NJ_T0073317.1 MGP_C57BL6NJ_G0030219.1 mouse_genomes_project 5 106289238 106298857 - MGP_C57BL6NJ_P0073317 Plac8 protein_coding protein_coding MGP_C57BL6NJ_T0073318.1 MGP_C57BL6NJ_G0030219.1 mouse_genomes_project 5 106297871 106309102 - Plac8 protein_coding retained_intron MGP_C57BL6NJ_T0076609.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163335996 163344483 - MGP_C57BL6NJ_P0076609 Rfc3 protein_coding protein_coding MGP_C57BL6NJ_T0076610.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163336059 163337372 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0076611.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163336061 163338003 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0076612.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163336064 163344443 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0076613.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163337656 163344449 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0076614.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163340207 163344436 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0076615.1 MGP_C57BL6NJ_G0030855.1 mouse_genomes_project 5 163342807 163344468 - Rfc3 protein_coding retained_intron MGP_C57BL6NJ_T0001960.1 MGP_C57BL6NJ_G0001853.1 mouse_genomes_project 5 133037476 133039082 - TEC TEC MGP_C57BL6NJ_T0072701.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783792 79824697 + MGP_C57BL6NJ_P0072701 Exoc1 protein_coding protein_coding MGP_C57BL6NJ_T0072702.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783804 79824688 + MGP_C57BL6NJ_P0072702 Exoc1 protein_coding protein_coding MGP_C57BL6NJ_T0072703.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783809 79794217 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072704.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783825 79816203 + Exoc1 protein_coding processed_transcript MGP_C57BL6NJ_T0072705.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783839 79795590 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072706.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79783839 79824690 + MGP_C57BL6NJ_P0072706 Exoc1 protein_coding protein_coding MGP_C57BL6NJ_T0072707.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79796425 79803997 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072708.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79807127 79810036 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072709.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79814769 79821606 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072710.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79815636 79822419 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0072711.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79815774 79821367 + MGP_C57BL6NJ_P0072711 Exoc1 protein_coding protein_coding MGP_C57BL6NJ_T0072712.1 MGP_C57BL6NJ_G0030076.1 mouse_genomes_project 5 79822284 79824392 + Exoc1 protein_coding retained_intron MGP_C57BL6NJ_T0015519.1 MGP_C57BL6NJ_G0013564.1 mouse_genomes_project 5 117605574 117607266 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102498.1 MGP_C57BL6NJ_G0040367.1 mouse_genomes_project 5 32438837 32445584 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102499.1 MGP_C57BL6NJ_G0040367.1 mouse_genomes_project 5 32438841 32445640 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0001856.1 MGP_C57BL6NJ_G0001749.1 mouse_genomes_project 5 102213213 102215359 + TEC TEC MGP_C57BL6NJ_T0076377.1 MGP_C57BL6NJ_G0030813.1 mouse_genomes_project 5 157531532 157619685 + MGP_C57BL6NJ_P0076377 Wasf3 protein_coding protein_coding MGP_C57BL6NJ_T0004793.1 MGP_C57BL6NJ_G0004147.1 mouse_genomes_project 5 6279756 6306068 - Gm5106 antisense antisense MGP_C57BL6NJ_T0001898.1 MGP_C57BL6NJ_G0001791.1 mouse_genomes_project 5 118399133 118401255 + TEC TEC MGP_C57BL6NJ_T0015618.1 MGP_C57BL6NJ_G0013663.1 mouse_genomes_project 5 162155475 162157490 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015250.1 MGP_C57BL6NJ_G0013295.1 mouse_genomes_project 5 8399975 8400231 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100487.1 MGP_C57BL6NJ_G0038533.1 mouse_genomes_project 5 130993509 130993610 + Gm22965 snRNA snRNA MGP_C57BL6NJ_T0076116.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153665850 153682780 + MGP_C57BL6NJ_P0076116 Fscn1 protein_coding protein_coding MGP_C57BL6NJ_T0076117.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153665883 153682778 + MGP_C57BL6NJ_P0076117 Fscn1 protein_coding protein_coding MGP_C57BL6NJ_T0076118.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153666350 153681765 + MGP_C57BL6NJ_P0076118 Fscn1 protein_coding protein_coding MGP_C57BL6NJ_T0076119.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153668468 153678226 + Fscn1 protein_coding processed_transcript MGP_C57BL6NJ_T0076120.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153668765 153681548 + Fscn1 protein_coding processed_transcript MGP_C57BL6NJ_T0076121.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153670048 153678348 + Fscn1 protein_coding processed_transcript MGP_C57BL6NJ_T0076122.1 MGP_C57BL6NJ_G0030751.1 mouse_genomes_project 5 153677758 153681584 + Fscn1 protein_coding retained_intron MGP_C57BL6NJ_T0071544.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33702510 33727234 - MGP_C57BL6NJ_P0071544 Slbp protein_coding protein_coding MGP_C57BL6NJ_T0071545.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33707613 33727463 - MGP_C57BL6NJ_P0071545 Slbp protein_coding protein_coding MGP_C57BL6NJ_T0071546.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33707613 33727195 - MGP_C57BL6NJ_P0071546 Slbp protein_coding protein_coding MGP_C57BL6NJ_T0071547.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33710918 33727227 - Slbp protein_coding retained_intron MGP_C57BL6NJ_T0071548.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33712199 33727189 - MGP_C57BL6NJ_P0071548 Slbp protein_coding protein_coding MGP_C57BL6NJ_T0071549.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33714325 33727185 - MGP_C57BL6NJ_P0071549 Slbp protein_coding protein_coding MGP_C57BL6NJ_T0071550.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33717537 33727242 - Slbp protein_coding retained_intron MGP_C57BL6NJ_T0071551.1 MGP_C57BL6NJ_G0029880.1 mouse_genomes_project 5 33726513 33727190 - Slbp protein_coding retained_intron MGP_C57BL6NJ_T0001575.1 MGP_C57BL6NJ_G0001474.1 mouse_genomes_project 5 6161980 6165595 + TEC TEC MGP_C57BL6NJ_T0099460.1 MGP_C57BL6NJ_G0037517.1 mouse_genomes_project 5 2576981 2579628 - Gm43727 sense_intronic sense_intronic MGP_C57BL6NJ_T0015394.1 MGP_C57BL6NJ_G0013439.1 mouse_genomes_project 5 66409054 66409925 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015333.1 MGP_C57BL6NJ_G0013378.1 mouse_genomes_project 5 34610500 34611109 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008386.1 MGP_C57BL6NJ_G0006834.1 mouse_genomes_project 5 102271139 102279382 + lincRNA lincRNA MGP_C57BL6NJ_T0073390.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109578935 109589167 - MGP_C57BL6NJ_P0073390 1700016H13Rik protein_coding protein_coding MGP_C57BL6NJ_T0073391.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579325 109588889 - MGP_C57BL6NJ_P0073391 1700016H13Rik protein_coding protein_coding MGP_C57BL6NJ_T0073392.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579483 109588880 - MGP_C57BL6NJ_P0073392 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073393.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579489 109588905 - MGP_C57BL6NJ_P0073393 1700016H13Rik protein_coding protein_coding MGP_C57BL6NJ_T0073394.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579594 109588880 - MGP_C57BL6NJ_P0073394 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073395.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579667 109588880 - MGP_C57BL6NJ_P0073395 1700016H13Rik protein_coding protein_coding MGP_C57BL6NJ_T0073396.1 MGP_C57BL6NJ_G0030233.1 mouse_genomes_project 5 109579667 109588881 - MGP_C57BL6NJ_P0073396 1700016H13Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103192.1 MGP_C57BL6NJ_G0040986.1 mouse_genomes_project 5 51216607 51398576 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001683.1 MGP_C57BL6NJ_G0001579.1 mouse_genomes_project 5 46503962 46505990 + TEC TEC MGP_C57BL6NJ_T0071814.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736805 36833872 - MGP_C57BL6NJ_P0071814 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071815.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736805 36826394 - MGP_C57BL6NJ_P0071815 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071816.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736805 36834466 - MGP_C57BL6NJ_P0071816 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071817.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736806 36779805 - MGP_C57BL6NJ_P0071817 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071818.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736809 36833861 - MGP_C57BL6NJ_P0071818 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071819.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36736809 36780784 - MGP_C57BL6NJ_P0071819 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071820.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36738822 36756534 - MGP_C57BL6NJ_P0071820 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071821.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36738940 36838334 - MGP_C57BL6NJ_P0071821 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071822.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36738942 36838326 - MGP_C57BL6NJ_P0071822 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071823.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36738947 36739619 - Tbc1d14 protein_coding processed_transcript MGP_C57BL6NJ_T0071824.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36739147 36823614 - MGP_C57BL6NJ_P0071824 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071825.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36739215 36779730 - MGP_C57BL6NJ_P0071825 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071826.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36741366 36769349 - Tbc1d14 protein_coding retained_intron MGP_C57BL6NJ_T0071827.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36768159 36779701 - MGP_C57BL6NJ_P0071827 Tbc1d14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071828.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36773802 36779689 - Tbc1d14 protein_coding processed_transcript MGP_C57BL6NJ_T0071829.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36792580 36834459 - Tbc1d14 protein_coding retained_intron MGP_C57BL6NJ_T0071830.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36794467 36816126 - Tbc1d14 protein_coding processed_transcript MGP_C57BL6NJ_T0071831.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36794529 36825564 - MGP_C57BL6NJ_P0071831 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071832.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36823249 36838293 - Tbc1d14 protein_coding retained_intron MGP_C57BL6NJ_T0071833.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36823613 36838293 - MGP_C57BL6NJ_P0071833 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071834.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36823662 36825335 - MGP_C57BL6NJ_P0071834 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071835.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36823857 36845917 - MGP_C57BL6NJ_P0071835 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0071836.1 MGP_C57BL6NJ_G0029922.1 mouse_genomes_project 5 36824085 36845942 - MGP_C57BL6NJ_P0071836 Tbc1d14 protein_coding protein_coding MGP_C57BL6NJ_T0015428.1 MGP_C57BL6NJ_G0013473.1 mouse_genomes_project 5 82111775 82112139 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018586.1 MGP_C57BL6NJ_G0015982.1 mouse_genomes_project 5 22842906 22843888 - processed_transcript processed_transcript MGP_C57BL6NJ_T0073440.1 MGP_C57BL6NJ_G0030249.1 mouse_genomes_project 5 111085567 111143920 - MGP_C57BL6NJ_P0073440 Abcg3 protein_coding protein_coding MGP_C57BL6NJ_T0073441.1 MGP_C57BL6NJ_G0030249.1 mouse_genomes_project 5 111087601 111139036 - MGP_C57BL6NJ_P0073441 Abcg3 protein_coding protein_coding MGP_C57BL6NJ_T0073605.1 MGP_C57BL6NJ_G0030281.1 mouse_genomes_project 5 114708157 114742064 + MGP_C57BL6NJ_P0073605 Ccdc18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073606.1 MGP_C57BL6NJ_G0030281.1 mouse_genomes_project 5 114708196 114834676 + MGP_C57BL6NJ_P0073606 Ccdc18 protein_coding protein_coding MGP_C57BL6NJ_T0073607.1 MGP_C57BL6NJ_G0030281.1 mouse_genomes_project 5 114708228 114716309 + Ccdc18 protein_coding retained_intron MGP_C57BL6NJ_T0073608.1 MGP_C57BL6NJ_G0030281.1 mouse_genomes_project 5 114742249 114757915 + Ccdc18 protein_coding processed_transcript MGP_C57BL6NJ_T0073816.1 MGP_C57BL6NJ_G0030325.1 mouse_genomes_project 5 117775788 117777143 + MGP_C57BL6NJ_P0073816 Chek2 protein_coding protein_coding MGP_C57BL6NJ_T0073817.1 MGP_C57BL6NJ_G0030325.1 mouse_genomes_project 5 117775792 117813563 + MGP_C57BL6NJ_P0073817 Chek2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073818.1 MGP_C57BL6NJ_G0030325.1 mouse_genomes_project 5 117775809 117813575 + MGP_C57BL6NJ_P0073818 Chek2 protein_coding protein_coding MGP_C57BL6NJ_T0073819.1 MGP_C57BL6NJ_G0030325.1 mouse_genomes_project 5 117776038 117777149 + MGP_C57BL6NJ_P0073819 Chek2 protein_coding protein_coding MGP_C57BL6NJ_T0073820.1 MGP_C57BL6NJ_G0030325.1 mouse_genomes_project 5 117777263 117787533 + Chek2 protein_coding retained_intron MGP_C57BL6NJ_T0001728.1 MGP_C57BL6NJ_G0001623.1 mouse_genomes_project 5 52983389 52984618 - TEC TEC MGP_C57BL6NJ_T0100429.1 MGP_C57BL6NJ_G0038475.1 mouse_genomes_project 5 23659493 23659594 - Gm22333 snRNA snRNA MGP_C57BL6NJ_T0071629.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34296477 34392737 - MGP_C57BL6NJ_P0071629 Zfyve28 protein_coding protein_coding MGP_C57BL6NJ_T0071630.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34322213 34339038 - Zfyve28 protein_coding retained_intron MGP_C57BL6NJ_T0071631.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34322298 34339500 - Zfyve28 protein_coding processed_transcript MGP_C57BL6NJ_T0071632.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34328450 34350041 - Zfyve28 protein_coding retained_intron MGP_C57BL6NJ_T0071633.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34333069 34392860 - Zfyve28 protein_coding processed_transcript MGP_C57BL6NJ_T0071634.1 MGP_C57BL6NJ_G0029892.1 mouse_genomes_project 5 34340893 34392848 - MGP_C57BL6NJ_P0071634 Zfyve28 protein_coding protein_coding MGP_C57BL6NJ_T0074377.1 MGP_C57BL6NJ_G0030436.1 mouse_genomes_project 5 128556217 128625233 - MGP_C57BL6NJ_P0074377 Tpcn1 protein_coding protein_coding MGP_C57BL6NJ_T0074378.1 MGP_C57BL6NJ_G0030436.1 mouse_genomes_project 5 128568862 128625172 - Tpcn1 protein_coding retained_intron MGP_C57BL6NJ_T0074379.1 MGP_C57BL6NJ_G0030436.1 mouse_genomes_project 5 128611023 128625154 - Tpcn1 protein_coding retained_intron MGP_C57BL6NJ_T0074380.1 MGP_C57BL6NJ_G0030436.1 mouse_genomes_project 5 128623716 128625159 - Tpcn1 protein_coding retained_intron MGP_C57BL6NJ_T0100496.1 MGP_C57BL6NJ_G0038542.1 mouse_genomes_project 5 148365412 148365492 + Gm22956 snRNA snRNA MGP_C57BL6NJ_T0004972.1 MGP_C57BL6NJ_G0004277.1 mouse_genomes_project 5 128423471 128437612 - Gm27199 antisense antisense MGP_C57BL6NJ_T0074937.1 MGP_C57BL6NJ_G0030527.1 mouse_genomes_project 5 133289640 133340036 - MGP_C57BL6NJ_P0074937 Rilpl1 protein_coding protein_coding MGP_C57BL6NJ_T0074938.1 MGP_C57BL6NJ_G0030527.1 mouse_genomes_project 5 133290097 133312895 - MGP_C57BL6NJ_P0074938 Rilpl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074939.1 MGP_C57BL6NJ_G0030527.1 mouse_genomes_project 5 133290212 133323351 - MGP_C57BL6NJ_P0074939 Rilpl1 protein_coding protein_coding MGP_C57BL6NJ_T0074940.1 MGP_C57BL6NJ_G0030527.1 mouse_genomes_project 5 133290224 133323435 - MGP_C57BL6NJ_P0074940 Rilpl1 protein_coding protein_coding MGP_C57BL6NJ_T0000002.1 MGP_C57BL6NJ_G0000002.1 mouse_genomes_project 5 19577899 19581675 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C57BL6NJ_T0000003.1 MGP_C57BL6NJ_G0000002.1 mouse_genomes_project 5 19577899 19581672 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_C57BL6NJ_T0075484.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145795876 145810578 - MGP_C57BL6NJ_P0075484 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075485.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145795888 145810544 - MGP_C57BL6NJ_P0075485 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075486.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145795889 145797990 - MGP_C57BL6NJ_P0075486 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075487.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145796484 145797934 - MGP_C57BL6NJ_P0075487 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075488.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145798871 145801541 - MGP_C57BL6NJ_P0075488 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075489.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145799081 145803967 - MGP_C57BL6NJ_P0075489 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0075490.1 MGP_C57BL6NJ_G0030625.1 mouse_genomes_project 5 145801805 145810487 - MGP_C57BL6NJ_P0075490 Ssc4d protein_coding protein_coding MGP_C57BL6NJ_T0001930.1 MGP_C57BL6NJ_G0001823.1 mouse_genomes_project 5 126522949 126525627 + TEC TEC MGP_C57BL6NJ_T0015560.1 MGP_C57BL6NJ_G0013605.1 mouse_genomes_project 5 146076573 146077348 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075761.1 MGP_C57BL6NJ_G0030674.1 mouse_genomes_project 5 147841704 147846462 - MGP_C57BL6NJ_P0075761 Mepce protein_coding protein_coding MGP_C57BL6NJ_T0075762.1 MGP_C57BL6NJ_G0030674.1 mouse_genomes_project 5 147842227 147846514 - MGP_C57BL6NJ_P0075762 Mepce protein_coding protein_coding MGP_C57BL6NJ_T0075763.1 MGP_C57BL6NJ_G0030674.1 mouse_genomes_project 5 147842281 147843149 - Mepce protein_coding retained_intron MGP_C57BL6NJ_T0075764.1 MGP_C57BL6NJ_G0030674.1 mouse_genomes_project 5 147842928 147847454 - MGP_C57BL6NJ_P0075764 Mepce protein_coding protein_coding MGP_C57BL6NJ_T0075765.1 MGP_C57BL6NJ_G0030674.1 mouse_genomes_project 5 147844684 147846490 - Mepce protein_coding processed_transcript MGP_C57BL6NJ_T0101736.1 MGP_C57BL6NJ_G0039782.1 mouse_genomes_project 5 62654622 62654745 - Gm23708 snoRNA snoRNA MGP_C57BL6NJ_T0001918.1 MGP_C57BL6NJ_G0001811.1 mouse_genomes_project 5 124017889 124019260 - TEC TEC MGP_C57BL6NJ_T0002023.1 MGP_C57BL6NJ_G0001914.1 mouse_genomes_project 5 146219797 146224145 - TEC TEC MGP_C57BL6NJ_T0015466.1 MGP_C57BL6NJ_G0013511.1 mouse_genomes_project 5 98360827 98363253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073628.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115210836 115234603 - MGP_C57BL6NJ_P0073628 Gak protein_coding protein_coding MGP_C57BL6NJ_T0073629.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115210839 115277698 - MGP_C57BL6NJ_P0073629 Gak protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073630.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115210839 115277698 - MGP_C57BL6NJ_P0073630 Gak protein_coding protein_coding MGP_C57BL6NJ_T0073631.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115210845 115277698 - MGP_C57BL6NJ_P0073631 Gak protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073632.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115211598 115213295 - Gak protein_coding retained_intron MGP_C57BL6NJ_T0073633.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115212856 115277714 - MGP_C57BL6NJ_P0073633 Gak protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073634.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115213400 115218668 - Gak protein_coding processed_transcript MGP_C57BL6NJ_T0073635.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115218324 115222383 - Gak protein_coding retained_intron MGP_C57BL6NJ_T0073636.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115221504 115273050 - Gak protein_coding retained_intron MGP_C57BL6NJ_T0073637.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115224520 115234639 - MGP_C57BL6NJ_P0073637 Gak protein_coding protein_coding MGP_C57BL6NJ_T0073638.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115225796 115239616 - MGP_C57BL6NJ_P0073638 Gak protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073639.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115257946 115277382 - Gak protein_coding processed_transcript MGP_C57BL6NJ_T0073640.1 MGP_C57BL6NJ_G0030289.1 mouse_genomes_project 5 115271267 115277652 - MGP_C57BL6NJ_P0073640 Gak protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100426.1 MGP_C57BL6NJ_G0038472.1 mouse_genomes_project 5 21558579 21558686 - Gm22887 snRNA snRNA MGP_C57BL6NJ_T0074980.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133647446 133674567 + MGP_C57BL6NJ_P0074980 Zfp664 protein_coding protein_coding MGP_C57BL6NJ_T0074981.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133647519 133692851 + Zfp664 protein_coding processed_transcript MGP_C57BL6NJ_T0074982.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133647794 133671244 + Zfp664 protein_coding processed_transcript MGP_C57BL6NJ_T0074983.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133658907 133661053 + Zfp664 protein_coding processed_transcript MGP_C57BL6NJ_T0074984.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133660725 133671414 + Zfp664 protein_coding processed_transcript MGP_C57BL6NJ_T0074985.1 MGP_C57BL6NJ_G0030535.1 mouse_genomes_project 5 133670505 133674567 + Zfp664 protein_coding processed_transcript MGP_C57BL6NJ_T0001576.1 MGP_C57BL6NJ_G0001475.1 mouse_genomes_project 5 6228802 6232612 - TEC TEC MGP_C57BL6NJ_T0015389.1 MGP_C57BL6NJ_G0013434.1 mouse_genomes_project 5 63784778 63785415 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072136.1 MGP_C57BL6NJ_G0029973.1 mouse_genomes_project 5 52521629 52627282 - MGP_C57BL6NJ_P0072136 Ppargc1a protein_coding protein_coding MGP_C57BL6NJ_T0072137.1 MGP_C57BL6NJ_G0029973.1 mouse_genomes_project 5 52525032 52627371 - MGP_C57BL6NJ_P0072137 Ppargc1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072138.1 MGP_C57BL6NJ_G0029973.1 mouse_genomes_project 5 52525559 52642742 - MGP_C57BL6NJ_P0072138 Ppargc1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072139.1 MGP_C57BL6NJ_G0029973.1 mouse_genomes_project 5 52563938 52642764 - MGP_C57BL6NJ_P0072139 Ppargc1a protein_coding protein_coding MGP_C57BL6NJ_T0004918.1 MGP_C57BL6NJ_G0004241.1 mouse_genomes_project 5 108347238 108356283 - 1700013M08Rik antisense antisense MGP_C57BL6NJ_T0004919.1 MGP_C57BL6NJ_G0004241.1 mouse_genomes_project 5 108352159 108352957 - 1700013M08Rik antisense antisense MGP_C57BL6NJ_T0100480.1 MGP_C57BL6NJ_G0038526.1 mouse_genomes_project 5 120172238 120172347 + Gm22740 snRNA snRNA MGP_C57BL6NJ_T0004880.1 MGP_C57BL6NJ_G0004217.1 mouse_genomes_project 5 78304299 78304898 - Gm42802 antisense antisense MGP_C57BL6NJ_T0015602.1 MGP_C57BL6NJ_G0013647.1 mouse_genomes_project 5 157338664 157339138 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008292.1 MGP_C57BL6NJ_G0006756.1 mouse_genomes_project 5 39890855 40057412 - 4930513D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008293.1 MGP_C57BL6NJ_G0006756.1 mouse_genomes_project 5 39891671 40057455 - 4930513D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008294.1 MGP_C57BL6NJ_G0006756.1 mouse_genomes_project 5 39907153 40057410 - 4930513D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008327.1 MGP_C57BL6NJ_G0006787.1 mouse_genomes_project 5 66668562 66712395 + Gm31363 lincRNA lincRNA MGP_C57BL6NJ_T0008615.1 MGP_C57BL6NJ_G0006986.1 mouse_genomes_project 5 154566832 154571447 + D130017N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0001933.1 MGP_C57BL6NJ_G0001826.1 mouse_genomes_project 5 128232992 128234126 + TEC TEC MGP_C57BL6NJ_T0076062.1 MGP_C57BL6NJ_G0030739.1 mouse_genomes_project 5 151394879 151542404 - MGP_C57BL6NJ_P0076062 Card11 protein_coding protein_coding MGP_C57BL6NJ_T0076063.1 MGP_C57BL6NJ_G0030739.1 mouse_genomes_project 5 151394881 151404095 - Card11 protein_coding retained_intron MGP_C57BL6NJ_T0076064.1 MGP_C57BL6NJ_G0030739.1 mouse_genomes_project 5 151439987 151542293 - Card11 protein_coding retained_intron MGP_C57BL6NJ_T0015517.1 MGP_C57BL6NJ_G0013562.1 mouse_genomes_project 5 117223357 117223676 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075748.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147803155 147826709 + MGP_C57BL6NJ_P0075748 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075749.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147803384 147809640 + Tsc22d4 protein_coding retained_intron MGP_C57BL6NJ_T0075750.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147803421 147818311 + MGP_C57BL6NJ_P0075750 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075751.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147808093 147815801 + Tsc22d4 protein_coding retained_intron MGP_C57BL6NJ_T0075752.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147815047 147816451 + MGP_C57BL6NJ_P0075752 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075753.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147815087 147816335 + MGP_C57BL6NJ_P0075753 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075754.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147818601 147824989 + MGP_C57BL6NJ_P0075754 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075755.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147818612 147824989 + MGP_C57BL6NJ_P0075755 Tsc22d4 protein_coding protein_coding MGP_C57BL6NJ_T0075756.1 MGP_C57BL6NJ_G0030672.1 mouse_genomes_project 5 147824286 147824879 + Tsc22d4 protein_coding processed_transcript MGP_C57BL6NJ_T0075114.1 MGP_C57BL6NJ_G0030560.1 mouse_genomes_project 5 138966330 139006173 + MGP_C57BL6NJ_P0075114 Gbas protein_coding protein_coding MGP_C57BL6NJ_T0075115.1 MGP_C57BL6NJ_G0030560.1 mouse_genomes_project 5 138966366 139006096 + MGP_C57BL6NJ_P0075115 Gbas protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075116.1 MGP_C57BL6NJ_G0030560.1 mouse_genomes_project 5 138966368 139005219 + MGP_C57BL6NJ_P0075116 Gbas protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075117.1 MGP_C57BL6NJ_G0030560.1 mouse_genomes_project 5 138999493 139005048 + Gbas protein_coding retained_intron MGP_C57BL6NJ_T0075118.1 MGP_C57BL6NJ_G0030560.1 mouse_genomes_project 5 139000065 139001700 + Gbas protein_coding processed_transcript MGP_C57BL6NJ_T0070875.1 MGP_C57BL6NJ_G0029763.1 mouse_genomes_project 5 23008137 23012986 - MGP_C57BL6NJ_P0070875 Tomm7 protein_coding protein_coding MGP_C57BL6NJ_T0001781.1 MGP_C57BL6NJ_G0001675.1 mouse_genomes_project 5 68242009 68242712 + TEC TEC MGP_C57BL6NJ_T0015549.1 MGP_C57BL6NJ_G0013594.1 mouse_genomes_project 5 134281183 134282866 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015603.1 MGP_C57BL6NJ_G0013648.1 mouse_genomes_project 5 157387578 157388450 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071218.1 MGP_C57BL6NJ_G0029831.1 mouse_genomes_project 5 30658011 30667858 + MGP_C57BL6NJ_P0071218 Khk protein_coding protein_coding MGP_C57BL6NJ_T0071219.1 MGP_C57BL6NJ_G0029831.1 mouse_genomes_project 5 30658199 30667656 + MGP_C57BL6NJ_P0071219 Khk protein_coding protein_coding MGP_C57BL6NJ_T0071220.1 MGP_C57BL6NJ_G0029831.1 mouse_genomes_project 5 30658442 30667799 + MGP_C57BL6NJ_P0071220 Khk protein_coding protein_coding MGP_C57BL6NJ_T0071221.1 MGP_C57BL6NJ_G0029831.1 mouse_genomes_project 5 30658467 30667403 + MGP_C57BL6NJ_P0071221 Khk protein_coding protein_coding MGP_C57BL6NJ_T0071222.1 MGP_C57BL6NJ_G0029831.1 mouse_genomes_project 5 30667223 30667855 + Khk protein_coding retained_intron MGP_C57BL6NJ_T0010911.1 MGP_C57BL6NJ_G0008996.1 mouse_genomes_project 5 6989637 6989713 + Mir879 miRNA miRNA MGP_C57BL6NJ_T0074346.1 MGP_C57BL6NJ_G0030429.1 mouse_genomes_project 5 127780796 127790782 + MGP_C57BL6NJ_P0074346 Tbx5 protein_coding protein_coding MGP_C57BL6NJ_T0074347.1 MGP_C57BL6NJ_G0030429.1 mouse_genomes_project 5 127782785 127836768 + MGP_C57BL6NJ_P0074347 Tbx5 protein_coding protein_coding MGP_C57BL6NJ_T0074348.1 MGP_C57BL6NJ_G0030429.1 mouse_genomes_project 5 127786050 127794998 + MGP_C57BL6NJ_P0074348 Tbx5 protein_coding protein_coding MGP_C57BL6NJ_T0103194.1 MGP_C57BL6NJ_G0040988.1 mouse_genomes_project 5 71210503 71236860 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0075412.1 MGP_C57BL6NJ_G0030610.1 mouse_genomes_project 5 145031100 145091552 - MGP_C57BL6NJ_P0075412 Fkbp6 protein_coding protein_coding MGP_C57BL6NJ_T0075413.1 MGP_C57BL6NJ_G0030610.1 mouse_genomes_project 5 145031100 145091522 - MGP_C57BL6NJ_P0075413 Fkbp6 protein_coding protein_coding MGP_C57BL6NJ_T0075414.1 MGP_C57BL6NJ_G0030610.1 mouse_genomes_project 5 145078874 145091383 - MGP_C57BL6NJ_P0075414 Fkbp6 protein_coding protein_coding MGP_C57BL6NJ_T0075415.1 MGP_C57BL6NJ_G0030610.1 mouse_genomes_project 5 145078874 145091551 - MGP_C57BL6NJ_P0075415 Fkbp6 protein_coding protein_coding MGP_C57BL6NJ_T0070816.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20879603 21365242 - MGP_C57BL6NJ_P0070816 Reln protein_coding protein_coding MGP_C57BL6NJ_T0070817.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20880044 20892108 - Reln protein_coding processed_transcript MGP_C57BL6NJ_T0070818.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20880399 21365230 - MGP_C57BL6NJ_P0070818 Reln protein_coding protein_coding MGP_C57BL6NJ_T0070819.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20885565 20890058 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070820.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20891066 20895086 - Reln protein_coding processed_transcript MGP_C57BL6NJ_T0070821.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20891672 20892028 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070822.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20894763 20933568 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070823.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 20978119 21011736 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070824.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21004504 21365230 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070825.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21050150 21051380 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070826.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21062939 21149534 - MGP_C57BL6NJ_P0070826 Reln protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070827.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21142937 21365230 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070828.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21190949 21365230 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070829.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21242379 21365230 - Reln protein_coding retained_intron MGP_C57BL6NJ_T0070830.1 MGP_C57BL6NJ_G0029756.1 mouse_genomes_project 5 21362610 21365242 - Reln protein_coding processed_transcript MGP_C57BL6NJ_T0015538.1 MGP_C57BL6NJ_G0013583.1 mouse_genomes_project 5 125014342 125014779 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004846.1 MGP_C57BL6NJ_G0004189.1 mouse_genomes_project 5 44922621 44926941 + Gm42982 antisense antisense MGP_C57BL6NJ_T0008368.1 MGP_C57BL6NJ_G0006819.1 mouse_genomes_project 5 86106495 86108798 - 1700031L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008369.1 MGP_C57BL6NJ_G0006819.1 mouse_genomes_project 5 86106514 86108801 - 1700031L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008370.1 MGP_C57BL6NJ_G0006819.1 mouse_genomes_project 5 86106524 86107433 - 1700031L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008371.1 MGP_C57BL6NJ_G0006819.1 mouse_genomes_project 5 86106773 86107425 - 1700031L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0075428.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145157639 145314867 - MGP_C57BL6NJ_P0075428 Hip1 protein_coding protein_coding MGP_C57BL6NJ_T0075429.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145157643 145187600 - MGP_C57BL6NJ_P0075429 Hip1 protein_coding protein_coding MGP_C57BL6NJ_T0075430.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145181404 145182584 - Hip1 protein_coding retained_intron MGP_C57BL6NJ_T0075431.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145182710 145192709 - MGP_C57BL6NJ_P0075431 Hip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075432.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145186890 145314872 - Hip1 protein_coding retained_intron MGP_C57BL6NJ_T0075433.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145191038 145204744 - Hip1 protein_coding processed_transcript MGP_C57BL6NJ_T0075434.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145201921 145246881 - MGP_C57BL6NJ_P0075434 Hip1 protein_coding protein_coding MGP_C57BL6NJ_T0075435.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145204627 145210429 - Hip1 protein_coding retained_intron MGP_C57BL6NJ_T0075436.1 MGP_C57BL6NJ_G0030614.1 mouse_genomes_project 5 145211304 145314867 - Hip1 protein_coding retained_intron MGP_C57BL6NJ_T0099113.1 MGP_C57BL6NJ_G0037177.1 mouse_genomes_project 5 54326259 54326338 + n-R5s171 rRNA rRNA MGP_C57BL6NJ_T0076344.1 MGP_C57BL6NJ_G0030800.1 mouse_genomes_project 5 156908320 156935123 - MGP_C57BL6NJ_P0076344 protein_coding protein_coding MGP_C57BL6NJ_T0005059.1 MGP_C57BL6NJ_G0004341.1 mouse_genomes_project 5 161905160 161921451 - Gm42556 antisense antisense MGP_C57BL6NJ_T0075055.1 MGP_C57BL6NJ_G0030549.1 mouse_genomes_project 5 137705850 137709088 + MGP_C57BL6NJ_P0075055 Fzd10 protein_coding protein_coding MGP_C57BL6NJ_T0071189.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30601919 30613088 + MGP_C57BL6NJ_P0071189 Tmem214 protein_coding protein_coding MGP_C57BL6NJ_T0071190.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30603538 30610952 + MGP_C57BL6NJ_P0071190 Tmem214 protein_coding protein_coding MGP_C57BL6NJ_T0071191.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30603540 30612272 + Tmem214 protein_coding retained_intron MGP_C57BL6NJ_T0071192.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30603542 30611376 + Tmem214 protein_coding retained_intron MGP_C57BL6NJ_T0071193.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30604271 30605393 + Tmem214 protein_coding retained_intron MGP_C57BL6NJ_T0071194.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30605680 30607502 + Tmem214 protein_coding processed_transcript MGP_C57BL6NJ_T0071195.1 MGP_C57BL6NJ_G0029827.1 mouse_genomes_project 5 30605725 30611371 + Tmem214 protein_coding retained_intron MGP_C57BL6NJ_T0015590.1 MGP_C57BL6NJ_G0013635.1 mouse_genomes_project 5 155227755 155227968 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015376.1 MGP_C57BL6NJ_G0013421.1 mouse_genomes_project 5 59787539 59787761 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015607.1 MGP_C57BL6NJ_G0013652.1 mouse_genomes_project 5 158663297 158663757 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072684.1 MGP_C57BL6NJ_G0030071.1 mouse_genomes_project 5 79379901 79391556 + Srd5a3 protein_coding retained_intron MGP_C57BL6NJ_T0072685.1 MGP_C57BL6NJ_G0030071.1 mouse_genomes_project 5 79379936 79380493 + Srd5a3 protein_coding processed_transcript MGP_C57BL6NJ_T0072686.1 MGP_C57BL6NJ_G0030071.1 mouse_genomes_project 5 79379958 79394614 + MGP_C57BL6NJ_P0072686 Srd5a3 protein_coding protein_coding MGP_C57BL6NJ_T0072687.1 MGP_C57BL6NJ_G0030071.1 mouse_genomes_project 5 79392600 79395334 + Srd5a3 protein_coding retained_intron MGP_C57BL6NJ_T0018633.1 MGP_C57BL6NJ_G0015998.1 mouse_genomes_project 5 79565920 79576566 + 4930432L08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0008521.1 MGP_C57BL6NJ_G0006925.1 mouse_genomes_project 5 127558886 127571881 + Gm16064 lincRNA lincRNA MGP_C57BL6NJ_T0008544.1 MGP_C57BL6NJ_G0006938.1 mouse_genomes_project 5 132763971 132793323 - lincRNA lincRNA MGP_C57BL6NJ_T0015524.1 MGP_C57BL6NJ_G0013569.1 mouse_genomes_project 5 121016082 121016450 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071464.1 MGP_C57BL6NJ_G0029865.1 mouse_genomes_project 5 32342652 32387348 + MGP_C57BL6NJ_P0071464 Ppp1cb protein_coding protein_coding MGP_C57BL6NJ_T0071465.1 MGP_C57BL6NJ_G0029865.1 mouse_genomes_project 5 32342961 32415419 + MGP_C57BL6NJ_P0071465 Ppp1cb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071466.1 MGP_C57BL6NJ_G0029865.1 mouse_genomes_project 5 32342995 32349090 + Ppp1cb protein_coding retained_intron MGP_C57BL6NJ_T0071467.1 MGP_C57BL6NJ_G0029865.1 mouse_genomes_project 5 32367296 32377137 + Ppp1cb protein_coding processed_transcript MGP_C57BL6NJ_T0071468.1 MGP_C57BL6NJ_G0029865.1 mouse_genomes_project 5 32377794 32384581 + MGP_C57BL6NJ_P0071468 Ppp1cb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001968.1 MGP_C57BL6NJ_G0001860.1 mouse_genomes_project 5 135999235 136002626 + TEC TEC MGP_C57BL6NJ_T0015281.1 MGP_C57BL6NJ_G0013326.1 mouse_genomes_project 5 21591682 21591978 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074682.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131414999 131546751 - MGP_C57BL6NJ_P0074682 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074683.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131415002 131447303 - MGP_C57BL6NJ_P0074683 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074684.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131415013 131546958 - MGP_C57BL6NJ_P0074684 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074685.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131415015 131546185 - MGP_C57BL6NJ_P0074685 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074686.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131417076 131547446 - MGP_C57BL6NJ_P0074686 Kdm2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074687.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131417489 131547475 - MGP_C57BL6NJ_P0074687 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074688.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131421266 131426876 - Kdm2b protein_coding retained_intron MGP_C57BL6NJ_T0074689.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131426298 131435473 - MGP_C57BL6NJ_P0074689 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074690.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131426425 131428024 - Kdm2b protein_coding retained_intron MGP_C57BL6NJ_T0074691.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131428006 131464670 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0074692.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131429218 131469053 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0074693.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131429228 131468494 - Kdm2b protein_coding retained_intron MGP_C57BL6NJ_T0074694.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131434739 131546744 - Kdm2b protein_coding retained_intron MGP_C57BL6NJ_T0074695.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131480520 131546188 - MGP_C57BL6NJ_P0074695 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074696.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131480623 131503188 - MGP_C57BL6NJ_P0074696 Kdm2b protein_coding protein_coding MGP_C57BL6NJ_T0074697.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131480706 131498647 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0074698.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131482884 131503799 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0074699.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131482904 131502672 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0074700.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131489722 131546751 - Kdm2b protein_coding retained_intron MGP_C57BL6NJ_T0074701.1 MGP_C57BL6NJ_G0030489.1 mouse_genomes_project 5 131498387 131542600 - Kdm2b protein_coding processed_transcript MGP_C57BL6NJ_T0100503.1 MGP_C57BL6NJ_G0038549.1 mouse_genomes_project 5 162367662 162367768 + Gm24630 snRNA snRNA MGP_C57BL6NJ_T0001949.1 MGP_C57BL6NJ_G0001842.1 mouse_genomes_project 5 131076559 131077137 - TEC TEC MGP_C57BL6NJ_T0001757.1 MGP_C57BL6NJ_G0001652.1 mouse_genomes_project 5 61870534 61873155 - TEC TEC MGP_C57BL6NJ_T0073522.1 MGP_C57BL6NJ_G0030266.1 mouse_genomes_project 5 113928519 113939404 + MGP_C57BL6NJ_P0073522 Ephx4 protein_coding protein_coding MGP_C57BL6NJ_T0073523.1 MGP_C57BL6NJ_G0030266.1 mouse_genomes_project 5 113929279 113955810 + MGP_C57BL6NJ_P0073523 Ephx4 protein_coding protein_coding MGP_C57BL6NJ_T0073524.1 MGP_C57BL6NJ_G0030266.1 mouse_genomes_project 5 113929558 113939312 + MGP_C57BL6NJ_P0073524 Ephx4 protein_coding protein_coding MGP_C57BL6NJ_T0073525.1 MGP_C57BL6NJ_G0030266.1 mouse_genomes_project 5 113931568 113939372 + MGP_C57BL6NJ_P0073525 Ephx4 protein_coding protein_coding MGP_C57BL6NJ_T0072856.1 MGP_C57BL6NJ_G0030102.1 mouse_genomes_project 5 90978095 91080561 - MGP_C57BL6NJ_P0072856 Tmprss11f protein_coding protein_coding MGP_C57BL6NJ_T0072857.1 MGP_C57BL6NJ_G0030102.1 mouse_genomes_project 5 91020889 91080561 - Tmprss11f protein_coding processed_transcript MGP_C57BL6NJ_T0072858.1 MGP_C57BL6NJ_G0030102.1 mouse_genomes_project 5 91056834 91080520 - Tmprss11f protein_coding retained_intron MGP_C57BL6NJ_T0001877.1 MGP_C57BL6NJ_G0001770.1 mouse_genomes_project 5 110059990 110062252 - TEC TEC MGP_C57BL6NJ_T0001991.1 MGP_C57BL6NJ_G0001883.1 mouse_genomes_project 5 141037500 141040360 - TEC TEC MGP_C57BL6NJ_T0015399.1 MGP_C57BL6NJ_G0013444.1 mouse_genomes_project 5 66551831 66552330 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004926.1 MGP_C57BL6NJ_G0004246.1 mouse_genomes_project 5 113930606 113957685 - Gm17202 antisense antisense MGP_C57BL6NJ_T0001589.1 MGP_C57BL6NJ_G0001488.1 mouse_genomes_project 5 11971601 11973458 - TEC TEC MGP_C57BL6NJ_T0071619.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34250217 34269727 - MGP_C57BL6NJ_P0071619 Haus3 protein_coding protein_coding MGP_C57BL6NJ_T0071620.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34261056 34269648 - Haus3 protein_coding retained_intron MGP_C57BL6NJ_T0071621.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34261295 34262098 - Haus3 protein_coding processed_transcript MGP_C57BL6NJ_T0071622.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34268131 34269652 - Haus3 protein_coding processed_transcript MGP_C57BL6NJ_T0071623.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34268223 34269703 - MGP_C57BL6NJ_P0071623 Haus3 protein_coding protein_coding MGP_C57BL6NJ_T0071624.1 MGP_C57BL6NJ_G0029890.1 mouse_genomes_project 5 34268436 34269633 - MGP_C57BL6NJ_P0071624 Haus3 protein_coding protein_coding MGP_C57BL6NJ_T0015243.1 MGP_C57BL6NJ_G0013288.1 mouse_genomes_project 5 6439751 6440739 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015475.1 MGP_C57BL6NJ_G0013520.1 mouse_genomes_project 5 105511207 105511665 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070437.1 MGP_C57BL6NJ_G0029689.1 mouse_genomes_project 5 656732 669500 - MGP_C57BL6NJ_P0070437 Rbm48 protein_coding protein_coding MGP_C57BL6NJ_T0070438.1 MGP_C57BL6NJ_G0029689.1 mouse_genomes_project 5 657530 668974 - MGP_C57BL6NJ_P0070438 Rbm48 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070439.1 MGP_C57BL6NJ_G0029689.1 mouse_genomes_project 5 663698 665062 - Rbm48 protein_coding retained_intron MGP_C57BL6NJ_T0070440.1 MGP_C57BL6NJ_G0029689.1 mouse_genomes_project 5 664402 668997 - Rbm48 protein_coding retained_intron MGP_C57BL6NJ_T0070441.1 MGP_C57BL6NJ_G0029689.1 mouse_genomes_project 5 665176 669117 - MGP_C57BL6NJ_P0070441 Rbm48 protein_coding protein_coding MGP_C57BL6NJ_T0001763.1 MGP_C57BL6NJ_G0001657.1 mouse_genomes_project 5 66706863 66707817 + TEC TEC MGP_C57BL6NJ_T0005013.1 MGP_C57BL6NJ_G0004308.1 mouse_genomes_project 5 144348213 144351869 + Gm10369 antisense antisense MGP_C57BL6NJ_T0100494.1 MGP_C57BL6NJ_G0038540.1 mouse_genomes_project 5 145703358 145703465 + Gm22450 snRNA snRNA MGP_C57BL6NJ_T0073050.1 MGP_C57BL6NJ_G0030163.1 mouse_genomes_project 5 95692743 95701096 + Mthfd2l protein_coding processed_transcript MGP_C57BL6NJ_T0073051.1 MGP_C57BL6NJ_G0030163.1 mouse_genomes_project 5 95692882 95695048 + MGP_C57BL6NJ_P0073051 Mthfd2l protein_coding protein_coding MGP_C57BL6NJ_T0073052.1 MGP_C57BL6NJ_G0030163.1 mouse_genomes_project 5 95692906 95781953 + MGP_C57BL6NJ_P0073052 Mthfd2l protein_coding protein_coding MGP_C57BL6NJ_T0073053.1 MGP_C57BL6NJ_G0030163.1 mouse_genomes_project 5 95711447 95736765 + Mthfd2l protein_coding retained_intron MGP_C57BL6NJ_T0005046.1 MGP_C57BL6NJ_G0004331.1 mouse_genomes_project 5 154687289 154751511 - Gm17135 antisense antisense MGP_C57BL6NJ_T0015336.1 MGP_C57BL6NJ_G0013381.1 mouse_genomes_project 5 37576311 37576462 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071636.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452025 34469144 + MGP_C57BL6NJ_P0071636 Rnf4 protein_coding protein_coding MGP_C57BL6NJ_T0071637.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452064 34466233 + Rnf4 protein_coding retained_intron MGP_C57BL6NJ_T0071638.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452116 34469141 + MGP_C57BL6NJ_P0071638 Rnf4 protein_coding protein_coding MGP_C57BL6NJ_T0071639.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452126 34465739 + Rnf4 protein_coding processed_transcript MGP_C57BL6NJ_T0071640.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452153 34462840 + Rnf4 protein_coding retained_intron MGP_C57BL6NJ_T0071641.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452155 34458364 + Rnf4 protein_coding processed_transcript MGP_C57BL6NJ_T0071642.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452160 34463132 + Rnf4 protein_coding retained_intron MGP_C57BL6NJ_T0071643.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452182 34465574 + Rnf4 protein_coding retained_intron MGP_C57BL6NJ_T0071644.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452421 34465736 + MGP_C57BL6NJ_P0071644 Rnf4 protein_coding protein_coding MGP_C57BL6NJ_T0071645.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34452668 34469129 + MGP_C57BL6NJ_P0071645 Rnf4 protein_coding protein_coding MGP_C57BL6NJ_T0071646.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34453055 34458400 + Rnf4 protein_coding processed_transcript MGP_C57BL6NJ_T0071647.1 MGP_C57BL6NJ_G0029894.1 mouse_genomes_project 5 34466820 34471334 + Rnf4 protein_coding retained_intron MGP_C57BL6NJ_T0072240.1 MGP_C57BL6NJ_G0029995.1 mouse_genomes_project 5 66110863 66179020 - MGP_C57BL6NJ_P0072240 Rell1 protein_coding protein_coding MGP_C57BL6NJ_T0072241.1 MGP_C57BL6NJ_G0029995.1 mouse_genomes_project 5 66111031 66178946 - MGP_C57BL6NJ_P0072241 Rell1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072242.1 MGP_C57BL6NJ_G0029995.1 mouse_genomes_project 5 66131042 66136991 - Rell1 protein_coding processed_transcript MGP_C57BL6NJ_T0072243.1 MGP_C57BL6NJ_G0029995.1 mouse_genomes_project 5 66133297 66136854 - Rell1 protein_coding retained_intron MGP_C57BL6NJ_T0072244.1 MGP_C57BL6NJ_G0029995.1 mouse_genomes_project 5 66168043 66178962 - Rell1 protein_coding processed_transcript MGP_C57BL6NJ_T0004875.1 MGP_C57BL6NJ_G0004213.1 mouse_genomes_project 5 75219253 75280277 + Gm20647 antisense antisense MGP_C57BL6NJ_T0004978.1 MGP_C57BL6NJ_G0004283.1 mouse_genomes_project 5 130188036 130188670 + 1700008B11Rik antisense antisense MGP_C57BL6NJ_T0015435.1 MGP_C57BL6NJ_G0013480.1 mouse_genomes_project 5 89112616 89113283 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018650.1 MGP_C57BL6NJ_G0016005.1 mouse_genomes_project 5 132058977 132064330 + Gm43813 processed_transcript TEC MGP_C57BL6NJ_T0018651.1 MGP_C57BL6NJ_G0016005.1 mouse_genomes_project 5 132058977 132061697 + Gm43813 processed_transcript sense_intronic MGP_C57BL6NJ_T0100444.1 MGP_C57BL6NJ_G0038490.1 mouse_genomes_project 5 56651308 56651470 - Gm25513 snRNA snRNA MGP_C57BL6NJ_T0001806.1 MGP_C57BL6NJ_G0001700.1 mouse_genomes_project 5 70559289 70562984 + TEC TEC MGP_C57BL6NJ_T0008454.1 MGP_C57BL6NJ_G0006883.1 mouse_genomes_project 5 117427366 117444888 + A630023P12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008455.1 MGP_C57BL6NJ_G0006883.1 mouse_genomes_project 5 117427387 117427966 + A630023P12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008456.1 MGP_C57BL6NJ_G0006883.1 mouse_genomes_project 5 117433513 117444042 + A630023P12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008457.1 MGP_C57BL6NJ_G0006883.1 mouse_genomes_project 5 117433549 117436852 + A630023P12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008458.1 MGP_C57BL6NJ_G0006883.1 mouse_genomes_project 5 117433580 117444896 + A630023P12Rik lincRNA lincRNA MGP_C57BL6NJ_T0004861.1 MGP_C57BL6NJ_G0004201.1 mouse_genomes_project 5 67932550 67938553 - antisense antisense MGP_C57BL6NJ_T0001978.1 MGP_C57BL6NJ_G0001870.1 mouse_genomes_project 5 139093569 139094528 - TEC TEC MGP_C57BL6NJ_T0010944.1 MGP_C57BL6NJ_G0009029.1 mouse_genomes_project 5 92172517 92172609 - Mir3969 miRNA miRNA MGP_C57BL6NJ_T0001765.1 MGP_C57BL6NJ_G0001659.1 mouse_genomes_project 5 67260695 67262994 + TEC TEC MGP_C57BL6NJ_T0073713.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017091 117017809 + MGP_C57BL6NJ_P0073713 Chfr protein_coding protein_coding MGP_C57BL6NJ_T0073714.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017098 117049733 + MGP_C57BL6NJ_P0073714 Chfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073715.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017098 117057895 + MGP_C57BL6NJ_P0073715 Chfr protein_coding protein_coding MGP_C57BL6NJ_T0073716.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017100 117057444 + MGP_C57BL6NJ_P0073716 Chfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073717.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017106 117057583 + MGP_C57BL6NJ_P0073717 Chfr protein_coding protein_coding MGP_C57BL6NJ_T0073718.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017109 117054325 + Chfr protein_coding retained_intron MGP_C57BL6NJ_T0073719.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017109 117057896 + MGP_C57BL6NJ_P0073719 Chfr protein_coding protein_coding MGP_C57BL6NJ_T0073720.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017127 117057893 + MGP_C57BL6NJ_P0073720 Chfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073721.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017156 117030162 + MGP_C57BL6NJ_P0073721 Chfr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073722.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117017174 117027004 + MGP_C57BL6NJ_P0073722 Chfr protein_coding protein_coding MGP_C57BL6NJ_T0073723.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117040759 117048880 + Chfr protein_coding retained_intron MGP_C57BL6NJ_T0073724.1 MGP_C57BL6NJ_G0030309.1 mouse_genomes_project 5 117049731 117056929 + Chfr protein_coding retained_intron MGP_C57BL6NJ_T0001570.1 MGP_C57BL6NJ_G0001469.1 mouse_genomes_project 5 2991322 2993259 + TEC TEC MGP_C57BL6NJ_T0008287.1 MGP_C57BL6NJ_G0006751.1 mouse_genomes_project 5 38325384 38327762 + Gm42505 lincRNA lincRNA MGP_C57BL6NJ_T0076340.1 MGP_C57BL6NJ_G0030797.1 mouse_genomes_project 5 156285176 156341036 + MGP_C57BL6NJ_P0076340 Cyp3a57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076341.1 MGP_C57BL6NJ_G0030797.1 mouse_genomes_project 5 156285184 156341450 + MGP_C57BL6NJ_P0076341 Cyp3a57 protein_coding protein_coding MGP_C57BL6NJ_T0071156.1 MGP_C57BL6NJ_G0029821.1 mouse_genomes_project 5 30161430 30235377 - MGP_C57BL6NJ_P0071156 Cib4 protein_coding protein_coding MGP_C57BL6NJ_T0075660.1 MGP_C57BL6NJ_G0030656.1 mouse_genomes_project 5 147387730 147495878 - MGP_C57BL6NJ_P0075660 Zan protein_coding protein_coding MGP_C57BL6NJ_T0075661.1 MGP_C57BL6NJ_G0030656.1 mouse_genomes_project 5 147387730 147495409 - MGP_C57BL6NJ_P0075661 Zan protein_coding protein_coding MGP_C57BL6NJ_T0075662.1 MGP_C57BL6NJ_G0030656.1 mouse_genomes_project 5 147416096 147422085 - MGP_C57BL6NJ_P0075662 Zan protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075663.1 MGP_C57BL6NJ_G0030656.1 mouse_genomes_project 5 147448357 147467371 - Zan protein_coding retained_intron MGP_C57BL6NJ_T0072842.1 MGP_C57BL6NJ_G0030096.1 mouse_genomes_project 5 90525731 90595388 - MGP_C57BL6NJ_P0072842 Uba6 protein_coding protein_coding MGP_C57BL6NJ_T0072843.1 MGP_C57BL6NJ_G0030096.1 mouse_genomes_project 5 90536082 90595389 - Uba6 protein_coding retained_intron MGP_C57BL6NJ_T0098879.1 MGP_C57BL6NJ_G0036943.1 mouse_genomes_project 5 123538092 123538260 - pseudogene pseudogene MGP_C57BL6NJ_T0015459.1 MGP_C57BL6NJ_G0013504.1 mouse_genomes_project 5 96558722 96560088 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001590.1 MGP_C57BL6NJ_G0001489.1 mouse_genomes_project 5 12479694 12481565 + TEC TEC MGP_C57BL6NJ_T0008520.1 MGP_C57BL6NJ_G0006924.1 mouse_genomes_project 5 127534764 127543438 + Gm16063 lincRNA lincRNA MGP_C57BL6NJ_T0004829.1 MGP_C57BL6NJ_G0004177.1 mouse_genomes_project 5 35191112 35192688 - Gm43791 antisense antisense MGP_C57BL6NJ_T0008507.1 MGP_C57BL6NJ_G0006913.1 mouse_genomes_project 5 124214957 124437768 - Gm43122 lincRNA lincRNA MGP_C57BL6NJ_T0008509.1 MGP_C57BL6NJ_G0006913.1 mouse_genomes_project 5 124421917 124437802 - Gm43122 lincRNA lincRNA MGP_C57BL6NJ_T0076505.1 MGP_C57BL6NJ_G0030838.1 mouse_genomes_project 5 160783082 160811802 + MGP_C57BL6NJ_P0076505 Alox5ap protein_coding protein_coding MGP_C57BL6NJ_T0076506.1 MGP_C57BL6NJ_G0030838.1 mouse_genomes_project 5 160802765 160811502 + MGP_C57BL6NJ_P0076506 Alox5ap protein_coding protein_coding MGP_C57BL6NJ_T0076507.1 MGP_C57BL6NJ_G0030838.1 mouse_genomes_project 5 160811166 160811796 + Alox5ap protein_coding processed_transcript MGP_C57BL6NJ_T0001944.1 MGP_C57BL6NJ_G0001837.1 mouse_genomes_project 5 130616648 130618989 + TEC TEC MGP_C57BL6NJ_T0073641.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115277728 115295299 + MGP_C57BL6NJ_P0073641 Tmem175 protein_coding protein_coding MGP_C57BL6NJ_T0073642.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115277790 115300051 + MGP_C57BL6NJ_P0073642 Tmem175 protein_coding protein_coding MGP_C57BL6NJ_T0073643.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115277960 115298532 + MGP_C57BL6NJ_P0073643 Tmem175 protein_coding protein_coding MGP_C57BL6NJ_T0073644.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115277967 115297940 + MGP_C57BL6NJ_P0073644 Tmem175 protein_coding protein_coding MGP_C57BL6NJ_T0073645.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115286063 115297774 + MGP_C57BL6NJ_P0073645 Tmem175 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073646.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115292948 115294464 + Tmem175 protein_coding retained_intron MGP_C57BL6NJ_T0073647.1 MGP_C57BL6NJ_G0030290.1 mouse_genomes_project 5 115295593 115296385 + Tmem175 protein_coding processed_transcript MGP_C57BL6NJ_T0072785.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84915653 85316158 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072786.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916100 85769229 + MGP_C57BL6NJ_P0072786 Adgrl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072787.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916386 85652870 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072788.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916389 85652867 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072789.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916630 84968401 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072790.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916833 85405536 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072791.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916836 85765573 + MGP_C57BL6NJ_P0072791 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072792.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84916874 85769240 + MGP_C57BL6NJ_P0072792 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072793.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84917227 85769230 + MGP_C57BL6NJ_P0072793 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072794.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84917425 85113947 + Adgrl3 protein_coding processed_transcript MGP_C57BL6NJ_T0072795.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84917426 85769229 + Adgrl3 protein_coding processed_transcript MGP_C57BL6NJ_T0072796.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 84917444 85522184 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072797.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234911 85767942 + MGP_C57BL6NJ_P0072797 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072798.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072798 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072799.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072799 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072800.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072800 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072801.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072801 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072802.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072802 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072803.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072803 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072804.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072804 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072805.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234912 85767942 + MGP_C57BL6NJ_P0072805 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072806.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234920 85272749 + Adgrl3 protein_coding processed_transcript MGP_C57BL6NJ_T0072807.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234950 85767811 + MGP_C57BL6NJ_P0072807 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072808.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234950 85767811 + MGP_C57BL6NJ_P0072808 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072809.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234950 85767811 + MGP_C57BL6NJ_P0072809 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072810.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234950 85768482 + MGP_C57BL6NJ_P0072810 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072811.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85234975 85768311 + MGP_C57BL6NJ_P0072811 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072812.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85235063 85769229 + MGP_C57BL6NJ_P0072812 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072813.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85235063 85769229 + MGP_C57BL6NJ_P0072813 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072814.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85605203 85652649 + Adgrl3 protein_coding processed_transcript MGP_C57BL6NJ_T0072815.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85623768 85769229 + MGP_C57BL6NJ_P0072815 Adgrl3 protein_coding protein_coding MGP_C57BL6NJ_T0072816.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85689583 85691665 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0072817.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85744302 85800679 + Adgrl3 protein_coding processed_transcript MGP_C57BL6NJ_T0072818.1 MGP_C57BL6NJ_G0030091.1 mouse_genomes_project 5 85764180 85766190 + Adgrl3 protein_coding retained_intron MGP_C57BL6NJ_T0001796.1 MGP_C57BL6NJ_G0001690.1 mouse_genomes_project 5 69215692 69217242 + TEC TEC MGP_C57BL6NJ_T0001693.1 MGP_C57BL6NJ_G0001589.1 mouse_genomes_project 5 49249985 49251371 + TEC TEC MGP_C57BL6NJ_T0001954.1 MGP_C57BL6NJ_G0001847.1 mouse_genomes_project 5 132049689 132051837 + TEC TEC MGP_C57BL6NJ_T0073024.1 MGP_C57BL6NJ_G0030153.1 mouse_genomes_project 5 95265697 95292072 + MGP_C57BL6NJ_P0073024 Afm protein_coding protein_coding MGP_C57BL6NJ_T0073025.1 MGP_C57BL6NJ_G0030153.1 mouse_genomes_project 5 95265714 95287586 + MGP_C57BL6NJ_P0073025 Afm protein_coding protein_coding MGP_C57BL6NJ_T0071837.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36853027 36924319 - MGP_C57BL6NJ_P0071837 D5Ertd579e protein_coding protein_coding MGP_C57BL6NJ_T0071838.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36854792 36866273 - MGP_C57BL6NJ_P0071838 D5Ertd579e protein_coding protein_coding MGP_C57BL6NJ_T0071839.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36868498 36873798 - D5Ertd579e protein_coding processed_transcript MGP_C57BL6NJ_T0071840.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36870407 36924343 - D5Ertd579e protein_coding retained_intron MGP_C57BL6NJ_T0071841.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36879653 36924319 - D5Ertd579e protein_coding retained_intron MGP_C57BL6NJ_T0071842.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36897310 36924406 - MGP_C57BL6NJ_P0071842 D5Ertd579e protein_coding protein_coding MGP_C57BL6NJ_T0071843.1 MGP_C57BL6NJ_G0029923.1 mouse_genomes_project 5 36915895 36924352 - D5Ertd579e protein_coding retained_intron MGP_C57BL6NJ_T0001882.1 MGP_C57BL6NJ_G0001775.1 mouse_genomes_project 5 113122873 113125778 - TEC TEC MGP_C57BL6NJ_T0008522.1 MGP_C57BL6NJ_G0006926.1 mouse_genomes_project 5 127603775 127609724 - Tbx3os2 lincRNA lincRNA MGP_C57BL6NJ_T0072076.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46498410 46660496 - MGP_C57BL6NJ_P0072076 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072077.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46498413 46660348 - MGP_C57BL6NJ_P0072077 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072079.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46501679 46658436 - MGP_C57BL6NJ_P0072079 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072080.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46502675 46524498 - Lcorl protein_coding processed_transcript MGP_C57BL6NJ_T0072081.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46520861 46528773 - Lcorl protein_coding retained_intron MGP_C57BL6NJ_T0072082.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46531529 46658434 - MGP_C57BL6NJ_P0072082 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072083.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46531585 46660394 - MGP_C57BL6NJ_P0072083 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072084.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46548479 46660348 - MGP_C57BL6NJ_P0072084 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0072085.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46548500 46660362 - MGP_C57BL6NJ_P0072085 Lcorl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072086.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46580674 46660382 - Lcorl protein_coding processed_transcript MGP_C57BL6NJ_T0072087.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46584373 46660496 - Lcorl protein_coding retained_intron MGP_C57BL6NJ_T0072088.1 MGP_C57BL6NJ_G0029968.1 mouse_genomes_project 5 46584543 46660369 - MGP_C57BL6NJ_P0072088 Lcorl protein_coding protein_coding MGP_C57BL6NJ_T0071648.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34487610 34615043 + MGP_C57BL6NJ_P0071648 Fam193a protein_coding protein_coding MGP_C57BL6NJ_T0071649.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34535584 34614334 + MGP_C57BL6NJ_P0071649 Fam193a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071650.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34553875 34614334 + MGP_C57BL6NJ_P0071650 Fam193a protein_coding protein_coding MGP_C57BL6NJ_T0071651.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34558759 34571161 + MGP_C57BL6NJ_P0071651 Fam193a protein_coding protein_coding MGP_C57BL6NJ_T0071652.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34571254 34586627 + MGP_C57BL6NJ_P0071652 Fam193a protein_coding protein_coding MGP_C57BL6NJ_T0071653.1 MGP_C57BL6NJ_G0029895.1 mouse_genomes_project 5 34593665 34606276 + MGP_C57BL6NJ_P0071653 Fam193a protein_coding protein_coding MGP_C57BL6NJ_T0008624.1 MGP_C57BL6NJ_G0006994.1 mouse_genomes_project 5 158674683 158678605 + D5Ertd605e lincRNA lincRNA MGP_C57BL6NJ_T0100450.1 MGP_C57BL6NJ_G0038496.1 mouse_genomes_project 5 72665902 72665989 + Gm23661 snRNA snRNA MGP_C57BL6NJ_T0073684.1 MGP_C57BL6NJ_G0030300.1 mouse_genomes_project 5 116010202 116037347 - MGP_C57BL6NJ_P0073684 Vmn2r15 protein_coding protein_coding MGP_C57BL6NJ_T0071994.1 MGP_C57BL6NJ_G0029954.1 mouse_genomes_project 5 44328318 44418386 + MGP_C57BL6NJ_P0071994 Cc2d2a protein_coding protein_coding MGP_C57BL6NJ_T0071995.1 MGP_C57BL6NJ_G0029954.1 mouse_genomes_project 5 44342389 44359202 + Cc2d2a protein_coding retained_intron MGP_C57BL6NJ_T0071996.1 MGP_C57BL6NJ_G0029954.1 mouse_genomes_project 5 44342389 44416731 + MGP_C57BL6NJ_P0071996 Cc2d2a protein_coding protein_coding MGP_C57BL6NJ_T0071997.1 MGP_C57BL6NJ_G0029954.1 mouse_genomes_project 5 44367522 44391963 + Cc2d2a protein_coding retained_intron MGP_C57BL6NJ_T0075667.1 MGP_C57BL6NJ_G0030658.1 mouse_genomes_project 5 147524122 147525110 - MGP_C57BL6NJ_P0075667 Pop7 protein_coding protein_coding MGP_C57BL6NJ_T0075668.1 MGP_C57BL6NJ_G0030658.1 mouse_genomes_project 5 147524123 147525203 - MGP_C57BL6NJ_P0075668 Pop7 protein_coding protein_coding MGP_C57BL6NJ_T0004970.1 MGP_C57BL6NJ_G0004276.1 mouse_genomes_project 5 128080766 128098932 - Gm10390 antisense antisense MGP_C57BL6NJ_T0004971.1 MGP_C57BL6NJ_G0004276.1 mouse_genomes_project 5 128091155 128098934 - Gm10390 antisense antisense MGP_C57BL6NJ_T0008523.1 MGP_C57BL6NJ_G0006927.1 mouse_genomes_project 5 127753667 127756204 - 1700021F13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008524.1 MGP_C57BL6NJ_G0006927.1 mouse_genomes_project 5 127753671 127756002 - 1700021F13Rik lincRNA lincRNA MGP_C57BL6NJ_T0004831.1 MGP_C57BL6NJ_G0004179.1 mouse_genomes_project 5 35930936 35932867 + Gm15650 antisense antisense MGP_C57BL6NJ_T0015262.1 MGP_C57BL6NJ_G0013307.1 mouse_genomes_project 5 16168344 16169407 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015522.1 MGP_C57BL6NJ_G0013567.1 mouse_genomes_project 5 117953207 117953574 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075771.1 MGP_C57BL6NJ_G0030676.1 mouse_genomes_project 5 147880520 147912228 - MGP_C57BL6NJ_P0075771 Pilra protein_coding protein_coding MGP_C57BL6NJ_T0075772.1 MGP_C57BL6NJ_G0030676.1 mouse_genomes_project 5 147881777 147907231 - Pilra protein_coding retained_intron MGP_C57BL6NJ_T0075779.1 MGP_C57BL6NJ_G0030676.1 mouse_genomes_project 5 147911219 147912147 - MGP_C57BL6NJ_P0075779 Pilra protein_coding protein_coding MGP_C57BL6NJ_T0103225.1 MGP_C57BL6NJ_G0041019.1 mouse_genomes_project 5 160403397 160403620 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0075491.1 MGP_C57BL6NJ_G0030626.1 mouse_genomes_project 5 145816251 145825723 + MGP_C57BL6NJ_P0075491 Zp3 protein_coding protein_coding MGP_C57BL6NJ_T0075492.1 MGP_C57BL6NJ_G0030626.1 mouse_genomes_project 5 145816320 145824391 + MGP_C57BL6NJ_P0075492 Zp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071888.1 MGP_C57BL6NJ_G0029932.1 mouse_genomes_project 5 37619371 37709564 + MGP_C57BL6NJ_P0071888 Evc2 protein_coding protein_coding MGP_C57BL6NJ_T0071889.1 MGP_C57BL6NJ_G0029932.1 mouse_genomes_project 5 37619480 37672367 + Evc2 protein_coding retained_intron MGP_C57BL6NJ_T0071890.1 MGP_C57BL6NJ_G0029932.1 mouse_genomes_project 5 37674484 37676603 + Evc2 protein_coding processed_transcript MGP_C57BL6NJ_T0071891.1 MGP_C57BL6NJ_G0029932.1 mouse_genomes_project 5 37700367 37702424 + Evc2 protein_coding retained_intron MGP_C57BL6NJ_T0010942.1 MGP_C57BL6NJ_G0009027.1 mouse_genomes_project 5 86820209 86820331 - Mir1187 miRNA miRNA MGP_C57BL6NJ_T0015380.1 MGP_C57BL6NJ_G0013425.1 mouse_genomes_project 5 61611732 61612144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075833.1 MGP_C57BL6NJ_G0030689.1 mouse_genomes_project 5 148336841 148343275 + MGP_C57BL6NJ_P0075833 Cnpy4 protein_coding protein_coding MGP_C57BL6NJ_T0075834.1 MGP_C57BL6NJ_G0030689.1 mouse_genomes_project 5 148339273 148341954 + MGP_C57BL6NJ_P0075834 Cnpy4 protein_coding protein_coding MGP_C57BL6NJ_T0075835.1 MGP_C57BL6NJ_G0030689.1 mouse_genomes_project 5 148339468 148341508 + Cnpy4 protein_coding retained_intron MGP_C57BL6NJ_T0008570.1 MGP_C57BL6NJ_G0006953.1 mouse_genomes_project 5 136189009 136189414 - Gm43476 lincRNA lincRNA MGP_C57BL6NJ_T0015312.1 MGP_C57BL6NJ_G0013357.1 mouse_genomes_project 5 29418466 29421448 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001687.1 MGP_C57BL6NJ_G0001583.1 mouse_genomes_project 5 47319360 47320755 + TEC TEC MGP_C57BL6NJ_T0071756.1 MGP_C57BL6NJ_G0029909.1 mouse_genomes_project 5 35569231 35581340 + MGP_C57BL6NJ_P0071756 Hmx1 protein_coding protein_coding MGP_C57BL6NJ_T0071757.1 MGP_C57BL6NJ_G0029909.1 mouse_genomes_project 5 35569240 35573014 + MGP_C57BL6NJ_P0071757 Hmx1 protein_coding protein_coding MGP_C57BL6NJ_T0015490.1 MGP_C57BL6NJ_G0013535.1 mouse_genomes_project 5 111150251 111150533 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101732.1 MGP_C57BL6NJ_G0039778.1 mouse_genomes_project 5 58208001 58208131 + Gm23896 snoRNA snoRNA MGP_C57BL6NJ_T0001814.1 MGP_C57BL6NJ_G0001708.1 mouse_genomes_project 5 72023241 72027602 - TEC TEC MGP_C57BL6NJ_T0070996.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24135033 24392574 - MGP_C57BL6NJ_P0070996 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0070997.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24135037 24282347 - MGP_C57BL6NJ_P0070997 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0070998.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24136065 24145924 - Prkag2 protein_coding retained_intron MGP_C57BL6NJ_T0070999.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24136145 24319102 - MGP_C57BL6NJ_P0070999 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0071000.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24143425 24187694 - MGP_C57BL6NJ_P0071000 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0071001.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24145707 24180248 - MGP_C57BL6NJ_P0071001 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0071002.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24150483 24166315 - Prkag2 protein_coding retained_intron MGP_C57BL6NJ_T0071003.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24151009 24187637 - Prkag2 protein_coding retained_intron MGP_C57BL6NJ_T0071004.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24166323 24188157 - MGP_C57BL6NJ_P0071004 Prkag2 protein_coding protein_coding MGP_C57BL6NJ_T0071005.1 MGP_C57BL6NJ_G0029787.1 mouse_genomes_project 5 24185415 24187635 - Prkag2 protein_coding processed_transcript MGP_C57BL6NJ_T0015353.1 MGP_C57BL6NJ_G0013398.1 mouse_genomes_project 5 48621366 48621814 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102278.1 MGP_C57BL6NJ_G0040261.1 mouse_genomes_project 5 92468599 92471254 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102279.1 MGP_C57BL6NJ_G0040261.1 mouse_genomes_project 5 92468758 92469883 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0070565.1 MGP_C57BL6NJ_G0029707.1 mouse_genomes_project 5 3030470 3042834 - MGP_C57BL6NJ_P0070565 Steap1 protein_coding protein_coding MGP_C57BL6NJ_T0070566.1 MGP_C57BL6NJ_G0029707.1 mouse_genomes_project 5 3030478 3034555 - MGP_C57BL6NJ_P0070566 Steap1 protein_coding protein_coding MGP_C57BL6NJ_T0070486.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1029447 1055927 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070487.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1029571 1062141 + MGP_C57BL6NJ_P0070487 Akap9 protein_coding protein_coding MGP_C57BL6NJ_T0070488.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1029667 1050116 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070489.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1029667 1190025 + MGP_C57BL6NJ_P0070489 Akap9 protein_coding protein_coding MGP_C57BL6NJ_T0070490.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1052451 1058816 + Akap9 protein_coding processed_transcript MGP_C57BL6NJ_T0070491.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1052462 1053043 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070492.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1055876 1058872 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070493.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1072767 1083027 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070494.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1076411 1077327 + MGP_C57BL6NJ_P0070494 Akap9 protein_coding protein_coding MGP_C57BL6NJ_T0070495.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1141299 1143593 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070496.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1167655 1169331 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070497.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1172779 1173782 + MGP_C57BL6NJ_P0070497 Akap9 protein_coding protein_coding MGP_C57BL6NJ_T0070498.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1172901 1173380 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0070499.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1173701 1179157 + MGP_C57BL6NJ_P0070499 Akap9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070500.1 MGP_C57BL6NJ_G0029697.1 mouse_genomes_project 5 1175878 1176338 + Akap9 protein_coding retained_intron MGP_C57BL6NJ_T0074792.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132396620 132422011 - MGP_C57BL6NJ_P0074792 Zcchc8 protein_coding protein_coding MGP_C57BL6NJ_T0074793.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132396628 132421955 - MGP_C57BL6NJ_P0074793 Zcchc8 protein_coding protein_coding MGP_C57BL6NJ_T0074794.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132398125 132401745 - Zcchc8 protein_coding retained_intron MGP_C57BL6NJ_T0074795.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132404413 132420426 - MGP_C57BL6NJ_P0074795 Zcchc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074796.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132404430 132408375 - Zcchc8 protein_coding retained_intron MGP_C57BL6NJ_T0074797.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132408180 132414992 - MGP_C57BL6NJ_P0074797 Zcchc8 protein_coding protein_coding MGP_C57BL6NJ_T0074798.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132409087 132421734 - MGP_C57BL6NJ_P0074798 Zcchc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074799.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132410624 132421773 - MGP_C57BL6NJ_P0074799 Zcchc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074800.1 MGP_C57BL6NJ_G0030506.1 mouse_genomes_project 5 132415000 132421685 - MGP_C57BL6NJ_P0074800 Zcchc8 protein_coding protein_coding MGP_C57BL6NJ_T0001621.1 MGP_C57BL6NJ_G0001519.1 mouse_genomes_project 5 28852704 28856998 - TEC TEC MGP_C57BL6NJ_T0073949.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121017393 121018424 - MGP_C57BL6NJ_P0073949 Selplg protein_coding protein_coding MGP_C57BL6NJ_T0073950.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121017404 121031219 - MGP_C57BL6NJ_P0073950 Selplg protein_coding protein_coding MGP_C57BL6NJ_T0073951.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121017412 121018175 - MGP_C57BL6NJ_P0073951 Selplg protein_coding protein_coding MGP_C57BL6NJ_T0073952.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121017412 121018115 - MGP_C57BL6NJ_P0073952 Selplg protein_coding protein_coding MGP_C57BL6NJ_T0073953.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121018933 121033362 - MGP_C57BL6NJ_P0073953 Selplg protein_coding protein_coding MGP_C57BL6NJ_T0073954.1 MGP_C57BL6NJ_G0030355.1 mouse_genomes_project 5 121027163 121031190 - Selplg protein_coding retained_intron MGP_C57BL6NJ_T0008305.1 MGP_C57BL6NJ_G0006767.1 mouse_genomes_project 5 45762662 46213384 - lincRNA lincRNA MGP_C57BL6NJ_T0008306.1 MGP_C57BL6NJ_G0006767.1 mouse_genomes_project 5 45876149 45945056 - lincRNA lincRNA MGP_C57BL6NJ_T0004799.1 MGP_C57BL6NJ_G0004152.1 mouse_genomes_project 5 18001538 18031414 - 4921504A21Rik antisense antisense MGP_C57BL6NJ_T0004800.1 MGP_C57BL6NJ_G0004152.1 mouse_genomes_project 5 18002463 18031027 - 4921504A21Rik antisense antisense MGP_C57BL6NJ_T0008617.1 MGP_C57BL6NJ_G0006987.1 mouse_genomes_project 5 155918293 155926740 + lincRNA lincRNA MGP_C57BL6NJ_T0103212.1 MGP_C57BL6NJ_G0041006.1 mouse_genomes_project 5 116140329 116146784 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0074536.1 MGP_C57BL6NJ_G0030468.1 mouse_genomes_project 5 130206454 130212103 + MGP_C57BL6NJ_P0074536 Fam109a protein_coding protein_coding MGP_C57BL6NJ_T0074537.1 MGP_C57BL6NJ_G0030468.1 mouse_genomes_project 5 130206465 130212070 + MGP_C57BL6NJ_P0074537 Fam109a protein_coding protein_coding MGP_C57BL6NJ_T0074538.1 MGP_C57BL6NJ_G0030468.1 mouse_genomes_project 5 130206475 130210355 + MGP_C57BL6NJ_P0074538 Fam109a protein_coding protein_coding MGP_C57BL6NJ_T0001989.1 MGP_C57BL6NJ_G0001881.1 mouse_genomes_project 5 141006057 141007354 - TEC TEC MGP_C57BL6NJ_T0076135.1 MGP_C57BL6NJ_G0030754.1 mouse_genomes_project 5 153912084 153944416 + MGP_C57BL6NJ_P0076135 protein_coding protein_coding MGP_C57BL6NJ_T0015325.1 MGP_C57BL6NJ_G0013370.1 mouse_genomes_project 5 33175042 33175502 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001582.1 MGP_C57BL6NJ_G0001481.1 mouse_genomes_project 5 10287632 10290516 - TEC TEC MGP_C57BL6NJ_T0008274.1 MGP_C57BL6NJ_G0006746.1 mouse_genomes_project 5 35559275 35568600 - E130018O15Rik lincRNA lincRNA MGP_C57BL6NJ_T0072951.1 MGP_C57BL6NJ_G0030134.1 mouse_genomes_project 5 92973229 92974322 + MGP_C57BL6NJ_P0072951 Prol1 protein_coding protein_coding MGP_C57BL6NJ_T0074750.1 MGP_C57BL6NJ_G0030498.1 mouse_genomes_project 5 131981985 132017538 + Bcl7a protein_coding processed_transcript MGP_C57BL6NJ_T0074751.1 MGP_C57BL6NJ_G0030498.1 mouse_genomes_project 5 131982599 132018498 + MGP_C57BL6NJ_P0074751 Bcl7a protein_coding protein_coding MGP_C57BL6NJ_T0074752.1 MGP_C57BL6NJ_G0030498.1 mouse_genomes_project 5 131982651 132001762 + MGP_C57BL6NJ_P0074752 Bcl7a protein_coding protein_coding MGP_C57BL6NJ_T0001923.1 MGP_C57BL6NJ_G0001816.1 mouse_genomes_project 5 125584224 125584331 + TEC TEC MGP_C57BL6NJ_T0005017.1 MGP_C57BL6NJ_G0004311.1 mouse_genomes_project 5 144725915 144727055 - Abhd11os antisense antisense MGP_C57BL6NJ_T0005018.1 MGP_C57BL6NJ_G0004311.1 mouse_genomes_project 5 144725923 144726956 - Abhd11os antisense antisense MGP_C57BL6NJ_T0004864.1 MGP_C57BL6NJ_G0004204.1 mouse_genomes_project 5 69110527 69165319 - Uchl1os antisense antisense MGP_C57BL6NJ_T0004865.1 MGP_C57BL6NJ_G0004204.1 mouse_genomes_project 5 69139288 69164854 - Uchl1os antisense antisense MGP_C57BL6NJ_T0008519.1 MGP_C57BL6NJ_G0006923.1 mouse_genomes_project 5 127413739 127422864 - Gm31314 lincRNA lincRNA MGP_C57BL6NJ_T0005053.1 MGP_C57BL6NJ_G0004335.1 mouse_genomes_project 5 160425018 160428469 - Gm15410 antisense antisense MGP_C57BL6NJ_T0015548.1 MGP_C57BL6NJ_G0013593.1 mouse_genomes_project 5 133268213 133268577 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075078.1 MGP_C57BL6NJ_G0030554.1 mouse_genomes_project 5 138272191 138392741 + MGP_C57BL6NJ_P0075078 Adgrd1 protein_coding protein_coding MGP_C57BL6NJ_T0075079.1 MGP_C57BL6NJ_G0030554.1 mouse_genomes_project 5 138272198 138275928 + Adgrd1 protein_coding retained_intron MGP_C57BL6NJ_T0075080.1 MGP_C57BL6NJ_G0030554.1 mouse_genomes_project 5 138272198 138391822 + MGP_C57BL6NJ_P0075080 Adgrd1 protein_coding protein_coding MGP_C57BL6NJ_T0001911.1 MGP_C57BL6NJ_G0001804.1 mouse_genomes_project 5 122340916 122341474 + TEC TEC MGP_C57BL6NJ_T0001704.1 MGP_C57BL6NJ_G0001599.1 mouse_genomes_project 5 49904782 49906090 - TEC TEC MGP_C57BL6NJ_T0001953.1 MGP_C57BL6NJ_G0001846.1 mouse_genomes_project 5 131687469 131689028 + TEC TEC MGP_C57BL6NJ_T0015340.1 MGP_C57BL6NJ_G0013385.1 mouse_genomes_project 5 39750936 39751393 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001843.1 MGP_C57BL6NJ_G0001736.1 mouse_genomes_project 5 85802361 85803369 + TEC TEC MGP_C57BL6NJ_T0074363.1 MGP_C57BL6NJ_G0030433.1 mouse_genomes_project 5 128493067 128500468 + MGP_C57BL6NJ_P0074363 Sds protein_coding protein_coding MGP_C57BL6NJ_T0074364.1 MGP_C57BL6NJ_G0030433.1 mouse_genomes_project 5 128493072 128500468 + MGP_C57BL6NJ_P0074364 Sds protein_coding protein_coding MGP_C57BL6NJ_T0074365.1 MGP_C57BL6NJ_G0030433.1 mouse_genomes_project 5 128495421 128497223 + MGP_C57BL6NJ_P0074365 Sds protein_coding protein_coding MGP_C57BL6NJ_T0074366.1 MGP_C57BL6NJ_G0030433.1 mouse_genomes_project 5 128496898 128497424 + Sds protein_coding retained_intron MGP_C57BL6NJ_T0073092.1 MGP_C57BL6NJ_G0030174.1 mouse_genomes_project 5 97084838 97091832 - MGP_C57BL6NJ_P0073092 U90926 protein_coding protein_coding MGP_C57BL6NJ_T0073093.1 MGP_C57BL6NJ_G0030174.1 mouse_genomes_project 5 97084841 97091832 - MGP_C57BL6NJ_P0073093 U90926 protein_coding protein_coding MGP_C57BL6NJ_T0073094.1 MGP_C57BL6NJ_G0030174.1 mouse_genomes_project 5 97085059 97087296 - U90926 protein_coding retained_intron MGP_C57BL6NJ_T0072878.1 MGP_C57BL6NJ_G0030110.1 mouse_genomes_project 5 91625939 91991092 - MGP_C57BL6NJ_P0072878 Ugt2b38 protein_coding protein_coding MGP_C57BL6NJ_T0005035.1 MGP_C57BL6NJ_G0004323.1 mouse_genomes_project 5 149488908 149489796 - 4930520M14Rik antisense antisense MGP_C57BL6NJ_T0102267.1 MGP_C57BL6NJ_G0040254.1 mouse_genomes_project 5 68610325 68610704 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0018602.1 MGP_C57BL6NJ_G0015988.1 mouse_genomes_project 5 44771310 44794608 - Gm42716 processed_transcript sense_intronic MGP_C57BL6NJ_T0018603.1 MGP_C57BL6NJ_G0015988.1 mouse_genomes_project 5 44788382 44794552 - Gm42716 processed_transcript sense_intronic MGP_C57BL6NJ_T0018604.1 MGP_C57BL6NJ_G0015988.1 mouse_genomes_project 5 44794103 44795873 - Gm42716 processed_transcript retained_intron MGP_C57BL6NJ_T0004999.1 MGP_C57BL6NJ_G0004297.1 mouse_genomes_project 5 133858395 133858925 + Gm42838 antisense antisense MGP_C57BL6NJ_T0071062.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765959 28773103 + MGP_C57BL6NJ_P0071062 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071063.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765960 28794202 + MGP_C57BL6NJ_P0071063 Rnf32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071064.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765962 28768715 + MGP_C57BL6NJ_P0071064 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071065.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765964 28794243 + MGP_C57BL6NJ_P0071065 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071066.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765970 28773163 + MGP_C57BL6NJ_P0071066 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071067.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28765973 28794245 + MGP_C57BL6NJ_P0071067 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071068.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28766025 28777619 + Rnf32 protein_coding retained_intron MGP_C57BL6NJ_T0071069.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28766051 28767959 + Rnf32 protein_coding processed_transcript MGP_C57BL6NJ_T0071070.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28766554 28773052 + MGP_C57BL6NJ_P0071070 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071071.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28767973 28794012 + MGP_C57BL6NJ_P0071071 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071072.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28768638 28794022 + MGP_C57BL6NJ_P0071072 Rnf32 protein_coding protein_coding MGP_C57BL6NJ_T0071073.1 MGP_C57BL6NJ_G0029803.1 mouse_genomes_project 5 28792506 28797178 + Rnf32 protein_coding retained_intron MGP_C57BL6NJ_T0008247.1 MGP_C57BL6NJ_G0006729.1 mouse_genomes_project 5 25012095 25013562 + Gm43972 lincRNA lincRNA MGP_C57BL6NJ_T0008363.1 MGP_C57BL6NJ_G0006814.1 mouse_genomes_project 5 80439252 80447678 - Gm15831 lincRNA lincRNA MGP_C57BL6NJ_T0072604.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76510423 76594897 + MGP_C57BL6NJ_P0072604 Dcun1d4 protein_coding protein_coding MGP_C57BL6NJ_T0072605.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76514053 76591388 + Dcun1d4 protein_coding processed_transcript MGP_C57BL6NJ_T0072606.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76520634 76594897 + MGP_C57BL6NJ_P0072606 Dcun1d4 protein_coding protein_coding MGP_C57BL6NJ_T0072607.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76520676 76577660 + MGP_C57BL6NJ_P0072607 Dcun1d4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072608.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76520732 76564951 + MGP_C57BL6NJ_P0072608 Dcun1d4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072609.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76520776 76594890 + MGP_C57BL6NJ_P0072609 Dcun1d4 protein_coding protein_coding MGP_C57BL6NJ_T0072610.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76523686 76553345 + Dcun1d4 protein_coding processed_transcript MGP_C57BL6NJ_T0072611.1 MGP_C57BL6NJ_G0030057.1 mouse_genomes_project 5 76543594 76568135 + MGP_C57BL6NJ_P0072611 Dcun1d4 protein_coding protein_coding MGP_C57BL6NJ_T0074431.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129415277 129422200 + MGP_C57BL6NJ_P0074431 Rpl6 protein_coding protein_coding MGP_C57BL6NJ_T0074432.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129415342 129416056 + Rpl6 protein_coding retained_intron MGP_C57BL6NJ_T0074433.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129417395 129418142 + Rpl6 protein_coding retained_intron MGP_C57BL6NJ_T0074434.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129417481 129421924 + MGP_C57BL6NJ_P0074434 Rpl6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074435.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129417834 129419417 + Rpl6 protein_coding retained_intron MGP_C57BL6NJ_T0074436.1 MGP_C57BL6NJ_G0030452.1 mouse_genomes_project 5 129418953 129421925 + Rpl6 protein_coding retained_intron MGP_C57BL6NJ_T0073249.1 MGP_C57BL6NJ_G0030209.1 mouse_genomes_project 5 104832072 104867420 - MGP_C57BL6NJ_P0073249 protein_coding protein_coding MGP_C57BL6NJ_T0073250.1 MGP_C57BL6NJ_G0030209.1 mouse_genomes_project 5 104832072 104867420 - MGP_C57BL6NJ_P0073250 protein_coding protein_coding MGP_C57BL6NJ_T0073251.1 MGP_C57BL6NJ_G0030209.1 mouse_genomes_project 5 104833420 104857776 - MGP_C57BL6NJ_P0073251 protein_coding protein_coding MGP_C57BL6NJ_T0073252.1 MGP_C57BL6NJ_G0030209.1 mouse_genomes_project 5 104842335 104848608 - protein_coding retained_intron MGP_C57BL6NJ_T0076559.1 MGP_C57BL6NJ_G0030846.1 mouse_genomes_project 5 162148763 162166551 - MGP_C57BL6NJ_P0076559 Zar1l protein_coding protein_coding MGP_C57BL6NJ_T0015272.1 MGP_C57BL6NJ_G0013317.1 mouse_genomes_project 5 20145426 20145678 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001773.1 MGP_C57BL6NJ_G0001667.1 mouse_genomes_project 5 67865758 67867507 + TEC TEC MGP_C57BL6NJ_T0074946.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133369878 133384604 + MGP_C57BL6NJ_P0074946 Ddx55 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074947.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133369887 133386314 + MGP_C57BL6NJ_P0074947 Ddx55 protein_coding protein_coding MGP_C57BL6NJ_T0074948.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133369905 133377700 + Ddx55 protein_coding processed_transcript MGP_C57BL6NJ_T0074949.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133369967 133377756 + Ddx55 protein_coding processed_transcript MGP_C57BL6NJ_T0074950.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133372670 133374100 + Ddx55 protein_coding retained_intron MGP_C57BL6NJ_T0074951.1 MGP_C57BL6NJ_G0030529.1 mouse_genomes_project 5 133378870 133384524 + Ddx55 protein_coding processed_transcript MGP_C57BL6NJ_T0008643.1 MGP_C57BL6NJ_G0007010.1 mouse_genomes_project 5 160750022 160756657 + 2310047D07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008645.1 MGP_C57BL6NJ_G0007010.1 mouse_genomes_project 5 160755826 160756639 + 2310047D07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008396.1 MGP_C57BL6NJ_G0006843.1 mouse_genomes_project 5 104128645 104143396 - 1700010H22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008397.1 MGP_C57BL6NJ_G0006843.1 mouse_genomes_project 5 104139251 104143474 - 1700010H22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008398.1 MGP_C57BL6NJ_G0006843.1 mouse_genomes_project 5 104140666 104143232 - 1700010H22Rik lincRNA lincRNA MGP_C57BL6NJ_T0073459.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112079903 112204345 + MGP_C57BL6NJ_P0073459 Lrrc8d protein_coding protein_coding MGP_C57BL6NJ_T0073460.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112080723 112204340 + MGP_C57BL6NJ_P0073460 Lrrc8d protein_coding protein_coding MGP_C57BL6NJ_T0073461.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112080744 112112233 + Lrrc8d protein_coding retained_intron MGP_C57BL6NJ_T0073462.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112080800 112112231 + Lrrc8d protein_coding processed_transcript MGP_C57BL6NJ_T0073463.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112109381 112200967 + MGP_C57BL6NJ_P0073463 Lrrc8d protein_coding protein_coding MGP_C57BL6NJ_T0073464.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112109776 112200978 + MGP_C57BL6NJ_P0073464 Lrrc8d protein_coding protein_coding MGP_C57BL6NJ_T0073465.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112109982 112202769 + Lrrc8d protein_coding processed_transcript MGP_C57BL6NJ_T0073466.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112110055 112201134 + MGP_C57BL6NJ_P0073466 Lrrc8d protein_coding protein_coding MGP_C57BL6NJ_T0073467.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112110222 112223203 + Lrrc8d protein_coding processed_transcript MGP_C57BL6NJ_T0073468.1 MGP_C57BL6NJ_G0030257.1 mouse_genomes_project 5 112213513 112223202 + Lrrc8d protein_coding processed_transcript MGP_C57BL6NJ_T0103201.1 MGP_C57BL6NJ_G0040995.1 mouse_genomes_project 5 91667263 91679740 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098878.1 MGP_C57BL6NJ_G0036942.1 mouse_genomes_project 5 45735963 45736345 - pseudogene pseudogene MGP_C57BL6NJ_T0015228.1 MGP_C57BL6NJ_G0013273.1 mouse_genomes_project 5 166844 168207 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001713.1 MGP_C57BL6NJ_G0001608.1 mouse_genomes_project 5 50049830 50051478 - TEC TEC MGP_C57BL6NJ_T0073277.1 MGP_C57BL6NJ_G0030214.1 mouse_genomes_project 5 105741443 105774559 + MGP_C57BL6NJ_P0073277 Enoph1 protein_coding protein_coding MGP_C57BL6NJ_T0073278.1 MGP_C57BL6NJ_G0030214.1 mouse_genomes_project 5 105741502 105774559 + MGP_C57BL6NJ_P0073278 Enoph1 protein_coding protein_coding MGP_C57BL6NJ_T0073279.1 MGP_C57BL6NJ_G0030214.1 mouse_genomes_project 5 105741526 105767155 + Enoph1 protein_coding retained_intron MGP_C57BL6NJ_T0073280.1 MGP_C57BL6NJ_G0030214.1 mouse_genomes_project 5 105767769 105769996 + Enoph1 protein_coding processed_transcript MGP_C57BL6NJ_T0008548.1 MGP_C57BL6NJ_G0006941.1 mouse_genomes_project 5 134207646 134218288 + Gm42485 lincRNA lincRNA MGP_C57BL6NJ_T0100432.1 MGP_C57BL6NJ_G0038478.1 mouse_genomes_project 5 30198423 30198530 - Gm25666 snRNA snRNA MGP_C57BL6NJ_T0004983.1 MGP_C57BL6NJ_G0004288.1 mouse_genomes_project 5 131569073 131579010 - Gm2479 antisense antisense MGP_C57BL6NJ_T0004984.1 MGP_C57BL6NJ_G0004288.1 mouse_genomes_project 5 131569238 131576808 - Gm2479 antisense antisense MGP_C57BL6NJ_T0011859.1 MGP_C57BL6NJ_G0009944.1 mouse_genomes_project 5 94370673 94370997 + Gm25320 misc_RNA misc_RNA MGP_C57BL6NJ_T0071009.1 MGP_C57BL6NJ_G0029790.1 mouse_genomes_project 5 24532944 24533250 - MGP_C57BL6NJ_P0071009 E130116L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0076086.1 MGP_C57BL6NJ_G0030745.1 mouse_genomes_project 5 153221079 153271289 - MGP_C57BL6NJ_P0076086 Mmd2 protein_coding protein_coding MGP_C57BL6NJ_T0076087.1 MGP_C57BL6NJ_G0030745.1 mouse_genomes_project 5 153241888 153243764 - Mmd2 protein_coding retained_intron MGP_C57BL6NJ_T0076088.1 MGP_C57BL6NJ_G0030745.1 mouse_genomes_project 5 153243190 153271289 - Mmd2 protein_coding processed_transcript MGP_C57BL6NJ_T0015483.1 MGP_C57BL6NJ_G0013528.1 mouse_genomes_project 5 108834015 108834270 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008256.1 MGP_C57BL6NJ_G0006733.1 mouse_genomes_project 5 28961591 28975338 + 4632411P08Rik lincRNA lincRNA MGP_C57BL6NJ_T0015374.1 MGP_C57BL6NJ_G0013419.1 mouse_genomes_project 5 58876501 58877945 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073479.1 MGP_C57BL6NJ_G0030260.1 mouse_genomes_project 5 113079175 113079279 + MGP_C57BL6NJ_P0073479 Gm17304 protein_coding protein_coding MGP_C57BL6NJ_T0074722.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131722269 131730088 + Setd1b protein_coding retained_intron MGP_C57BL6NJ_T0074723.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131722269 131749932 + MGP_C57BL6NJ_P0074723 Setd1b protein_coding protein_coding MGP_C57BL6NJ_T0074724.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131722269 131748396 + MGP_C57BL6NJ_P0074724 Setd1b protein_coding protein_coding MGP_C57BL6NJ_T0074725.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131723058 131748396 + MGP_C57BL6NJ_P0074725 Setd1b protein_coding protein_coding MGP_C57BL6NJ_T0074726.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131743891 131746370 + Setd1b protein_coding retained_intron MGP_C57BL6NJ_T0074727.1 MGP_C57BL6NJ_G0030494.1 mouse_genomes_project 5 131744563 131745290 + MGP_C57BL6NJ_P0074727 Setd1b protein_coding protein_coding MGP_C57BL6NJ_T0099118.1 MGP_C57BL6NJ_G0037182.1 mouse_genomes_project 5 95646952 95647069 + Gm22816 rRNA rRNA MGP_C57BL6NJ_T0001614.1 MGP_C57BL6NJ_G0001512.1 mouse_genomes_project 5 24681030 24685050 + TEC TEC MGP_C57BL6NJ_T0071625.1 MGP_C57BL6NJ_G0029891.1 mouse_genomes_project 5 34274670 34276124 - Mxd4 protein_coding processed_transcript MGP_C57BL6NJ_T0071626.1 MGP_C57BL6NJ_G0029891.1 mouse_genomes_project 5 34274674 34289289 - MGP_C57BL6NJ_P0071626 Mxd4 protein_coding protein_coding MGP_C57BL6NJ_T0071627.1 MGP_C57BL6NJ_G0029891.1 mouse_genomes_project 5 34278157 34289299 - MGP_C57BL6NJ_P0071627 Mxd4 protein_coding protein_coding MGP_C57BL6NJ_T0071628.1 MGP_C57BL6NJ_G0029891.1 mouse_genomes_project 5 34281322 34285949 - Mxd4 protein_coding retained_intron MGP_C57BL6NJ_T0010993.1 MGP_C57BL6NJ_G0009078.1 mouse_genomes_project 5 158529123 158529233 - Mir7k miRNA miRNA MGP_C57BL6NJ_T0004830.1 MGP_C57BL6NJ_G0004178.1 mouse_genomes_project 5 35782307 35789890 - 4931431C16Rik antisense antisense MGP_C57BL6NJ_T0015295.1 MGP_C57BL6NJ_G0013340.1 mouse_genomes_project 5 24752858 24753108 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015467.1 MGP_C57BL6NJ_G0013512.1 mouse_genomes_project 5 101554135 101554546 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001604.1 MGP_C57BL6NJ_G0001503.1 mouse_genomes_project 5 19938972 19940311 + TEC TEC MGP_C57BL6NJ_T0076022.1 MGP_C57BL6NJ_G0030730.1 mouse_genomes_project 5 150876836 150901802 + MGP_C57BL6NJ_P0076022 Eif3b protein_coding protein_coding MGP_C57BL6NJ_T0076023.1 MGP_C57BL6NJ_G0030730.1 mouse_genomes_project 5 150884598 150888180 + Eif3b protein_coding retained_intron MGP_C57BL6NJ_T0076024.1 MGP_C57BL6NJ_G0030730.1 mouse_genomes_project 5 150897987 150901139 + MGP_C57BL6NJ_P0076024 Eif3b protein_coding protein_coding MGP_C57BL6NJ_T0075854.1 MGP_C57BL6NJ_G0030695.1 mouse_genomes_project 5 148412834 148427829 - MGP_C57BL6NJ_P0075854 Gm43720 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072968.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93297372 93316313 - MGP_C57BL6NJ_P0072968 Grsf1 protein_coding protein_coding MGP_C57BL6NJ_T0072969.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93297925 93315868 - MGP_C57BL6NJ_P0072969 Grsf1 protein_coding protein_coding MGP_C57BL6NJ_T0072970.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93301002 93311783 - Grsf1 protein_coding retained_intron MGP_C57BL6NJ_T0072971.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93306261 93315872 - MGP_C57BL6NJ_P0072971 Grsf1 protein_coding protein_coding MGP_C57BL6NJ_T0072972.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93311584 93315394 - MGP_C57BL6NJ_P0072972 Grsf1 protein_coding protein_coding MGP_C57BL6NJ_T0072973.1 MGP_C57BL6NJ_G0030141.1 mouse_genomes_project 5 93313909 93315401 - Grsf1 protein_coding processed_transcript MGP_C57BL6NJ_T0073526.1 MGP_C57BL6NJ_G0030267.1 mouse_genomes_project 5 113957323 113960814 + MGP_C57BL6NJ_P0073526 Lpcat2b protein_coding protein_coding MGP_C57BL6NJ_T0001825.1 MGP_C57BL6NJ_G0001718.1 mouse_genomes_project 5 76318248 76320390 + TEC TEC MGP_C57BL6NJ_T0075427.1 MGP_C57BL6NJ_G0030613.1 mouse_genomes_project 5 145122749 145144465 - MGP_C57BL6NJ_P0075427 Pom121 protein_coding protein_coding MGP_C57BL6NJ_T0072184.1 MGP_C57BL6NJ_G0029983.1 mouse_genomes_project 5 54290202 54397375 - MGP_C57BL6NJ_P0072184 Sel1l3 protein_coding protein_coding MGP_C57BL6NJ_T0072185.1 MGP_C57BL6NJ_G0029983.1 mouse_genomes_project 5 54328265 54397238 - Sel1l3 protein_coding retained_intron MGP_C57BL6NJ_T0072186.1 MGP_C57BL6NJ_G0029983.1 mouse_genomes_project 5 54335968 54339339 - Sel1l3 protein_coding retained_intron MGP_C57BL6NJ_T0072187.1 MGP_C57BL6NJ_G0029983.1 mouse_genomes_project 5 54338253 54355747 - Sel1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0072188.1 MGP_C57BL6NJ_G0029983.1 mouse_genomes_project 5 54382140 54397733 - Sel1l3 protein_coding retained_intron MGP_C57BL6NJ_T0074761.1 MGP_C57BL6NJ_G0030501.1 mouse_genomes_project 5 132154221 132179883 + MGP_C57BL6NJ_P0074761 Lrrc43 protein_coding protein_coding MGP_C57BL6NJ_T0074762.1 MGP_C57BL6NJ_G0030501.1 mouse_genomes_project 5 132154224 132179853 + MGP_C57BL6NJ_P0074762 Lrrc43 protein_coding protein_coding MGP_C57BL6NJ_T0002043.1 MGP_C57BL6NJ_G0001934.1 mouse_genomes_project 5 159601952 159602637 + TEC TEC MGP_C57BL6NJ_T0008337.1 MGP_C57BL6NJ_G0006794.1 mouse_genomes_project 5 69915867 69921171 + Gm43698 lincRNA lincRNA MGP_C57BL6NJ_T0008338.1 MGP_C57BL6NJ_G0006794.1 mouse_genomes_project 5 69920897 69921992 + Gm43698 lincRNA lincRNA MGP_C57BL6NJ_T0100445.1 MGP_C57BL6NJ_G0038491.1 mouse_genomes_project 5 62428318 62428426 - Gm23331 snRNA snRNA MGP_C57BL6NJ_T0001675.1 MGP_C57BL6NJ_G0001571.1 mouse_genomes_project 5 45315994 45316133 + TEC TEC MGP_C57BL6NJ_T0015270.1 MGP_C57BL6NJ_G0013315.1 mouse_genomes_project 5 20028540 20028914 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071236.1 MGP_C57BL6NJ_G0029834.1 mouse_genomes_project 5 30708426 30716783 + MGP_C57BL6NJ_P0071236 Tcf23 protein_coding protein_coding MGP_C57BL6NJ_T0001977.1 MGP_C57BL6NJ_G0001869.1 mouse_genomes_project 5 138778494 138780722 + TEC TEC MGP_C57BL6NJ_T0008644.1 MGP_C57BL6NJ_G0007011.1 mouse_genomes_project 5 160753488 160766344 - Gm29264 lincRNA lincRNA MGP_C57BL6NJ_T0072629.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77309153 77641503 - MGP_C57BL6NJ_P0072629 Scfd2 protein_coding protein_coding MGP_C57BL6NJ_T0072630.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77309418 77397743 - Scfd2 protein_coding processed_transcript MGP_C57BL6NJ_T0072631.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77310432 77333954 - Scfd2 protein_coding retained_intron MGP_C57BL6NJ_T0072632.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77310435 77641506 - MGP_C57BL6NJ_P0072632 Scfd2 protein_coding protein_coding MGP_C57BL6NJ_T0072633.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77510174 77512814 - MGP_C57BL6NJ_P0072633 Scfd2 protein_coding protein_coding MGP_C57BL6NJ_T0072634.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77566589 77641483 - MGP_C57BL6NJ_P0072634 Scfd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072635.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77575069 77641513 - MGP_C57BL6NJ_P0072635 Scfd2 protein_coding protein_coding MGP_C57BL6NJ_T0072636.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77577182 77598465 - Scfd2 protein_coding retained_intron MGP_C57BL6NJ_T0072637.1 MGP_C57BL6NJ_G0030063.1 mouse_genomes_project 5 77623621 77641496 - Scfd2 protein_coding processed_transcript MGP_C57BL6NJ_T0004808.1 MGP_C57BL6NJ_G0004159.1 mouse_genomes_project 5 23954703 23962492 - Gm26648 antisense antisense MGP_C57BL6NJ_T0015424.1 MGP_C57BL6NJ_G0013469.1 mouse_genomes_project 5 80009375 80009816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074444.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129607158 129608565 - Trafd1 protein_coding retained_intron MGP_C57BL6NJ_T0074445.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129607158 129616294 - MGP_C57BL6NJ_P0074445 Trafd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074446.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129607158 129623908 - MGP_C57BL6NJ_P0074446 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074447.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129607163 129623847 - MGP_C57BL6NJ_P0074447 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074448.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129607165 129608908 - MGP_C57BL6NJ_P0074448 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074449.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129616101 129622880 - MGP_C57BL6NJ_P0074449 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074450.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129616347 129623853 - MGP_C57BL6NJ_P0074450 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074451.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129617067 129623905 - MGP_C57BL6NJ_P0074451 Trafd1 protein_coding protein_coding MGP_C57BL6NJ_T0074452.1 MGP_C57BL6NJ_G0030454.1 mouse_genomes_project 5 129621631 129622831 - Trafd1 protein_coding processed_transcript MGP_C57BL6NJ_T0075309.1 MGP_C57BL6NJ_G0030589.1 mouse_genomes_project 5 144194399 144196425 - MGP_C57BL6NJ_P0075309 Syna protein_coding protein_coding MGP_C57BL6NJ_T0011856.1 MGP_C57BL6NJ_G0009941.1 mouse_genomes_project 5 39760267 39760513 + Gm25505 misc_RNA misc_RNA MGP_C57BL6NJ_T0070952.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23673670 23731790 + MGP_C57BL6NJ_P0070952 Agap3 protein_coding protein_coding MGP_C57BL6NJ_T0070953.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23673700 23710514 + MGP_C57BL6NJ_P0070953 Agap3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070954.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23673827 23709650 + Agap3 protein_coding processed_transcript MGP_C57BL6NJ_T0070955.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23698791 23710506 + MGP_C57BL6NJ_P0070955 Agap3 protein_coding protein_coding MGP_C57BL6NJ_T0070956.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23704322 23731780 + MGP_C57BL6NJ_P0070956 Agap3 protein_coding protein_coding MGP_C57BL6NJ_T0070957.1 MGP_C57BL6NJ_G0029776.1 mouse_genomes_project 5 23704741 23710504 + Agap3 protein_coding processed_transcript MGP_C57BL6NJ_T0071289.1 MGP_C57BL6NJ_G0029843.1 mouse_genomes_project 5 30935907 30949195 - Gm29609 protein_coding processed_transcript MGP_C57BL6NJ_T0071292.1 MGP_C57BL6NJ_G0029843.1 mouse_genomes_project 5 30942176 30972719 - MGP_C57BL6NJ_P0071292 Gm29609 protein_coding protein_coding MGP_C57BL6NJ_T0001950.1 MGP_C57BL6NJ_G0001843.1 mouse_genomes_project 5 131313147 131321307 + TEC TEC MGP_C57BL6NJ_T0010968.1 MGP_C57BL6NJ_G0009053.1 mouse_genomes_project 5 133212323 133212403 - Gm27486 miRNA miRNA MGP_C57BL6NJ_T0015598.1 MGP_C57BL6NJ_G0013643.1 mouse_genomes_project 5 157003030 157003190 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072361.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68324789 68363635 + MGP_C57BL6NJ_P0072361 Chrna9 protein_coding protein_coding MGP_C57BL6NJ_T0072362.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68324796 68365713 + MGP_C57BL6NJ_P0072362 Chrna9 protein_coding protein_coding MGP_C57BL6NJ_T0072363.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68324816 68325783 + Chrna9 protein_coding retained_intron MGP_C57BL6NJ_T0072364.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68324841 68335735 + Chrna9 protein_coding processed_transcript MGP_C57BL6NJ_T0072365.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68324843 68335751 + Chrna9 protein_coding processed_transcript MGP_C57BL6NJ_T0072366.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68359911 68374456 + MGP_C57BL6NJ_P0072366 Chrna9 protein_coding protein_coding MGP_C57BL6NJ_T0072367.1 MGP_C57BL6NJ_G0030016.1 mouse_genomes_project 5 68373025 68374270 + Chrna9 protein_coding processed_transcript MGP_C57BL6NJ_T0008357.1 MGP_C57BL6NJ_G0006809.1 mouse_genomes_project 5 79052283 79054894 - Gm19590 lincRNA lincRNA MGP_C57BL6NJ_T0001799.1 MGP_C57BL6NJ_G0001693.1 mouse_genomes_project 5 69660138 69662649 + TEC TEC MGP_C57BL6NJ_T0005024.1 MGP_C57BL6NJ_G0004317.1 mouse_genomes_project 5 147557978 147566286 + Gm17112 antisense antisense MGP_C57BL6NJ_T0075651.1 MGP_C57BL6NJ_G0030654.1 mouse_genomes_project 5 147310336 147335157 - MGP_C57BL6NJ_P0075651 Slc12a9 protein_coding protein_coding MGP_C57BL6NJ_T0075652.1 MGP_C57BL6NJ_G0030654.1 mouse_genomes_project 5 147319034 147320314 - Slc12a9 protein_coding retained_intron MGP_C57BL6NJ_T0075653.1 MGP_C57BL6NJ_G0030654.1 mouse_genomes_project 5 147331327 147335157 - Slc12a9 protein_coding retained_intron MGP_C57BL6NJ_T0075654.1 MGP_C57BL6NJ_G0030654.1 mouse_genomes_project 5 147333818 147334570 - MGP_C57BL6NJ_P0075654 Slc12a9 protein_coding protein_coding MGP_C57BL6NJ_T0008432.1 MGP_C57BL6NJ_G0006866.1 mouse_genomes_project 5 112777364 112781233 + lincRNA lincRNA MGP_C57BL6NJ_T0072368.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68376487 68389514 - 9130230L23Rik protein_coding retained_intron MGP_C57BL6NJ_T0072369.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68386598 68417683 - MGP_C57BL6NJ_P0072369 9130230L23Rik protein_coding protein_coding MGP_C57BL6NJ_T0072370.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68386945 68399520 - MGP_C57BL6NJ_P0072370 9130230L23Rik protein_coding protein_coding MGP_C57BL6NJ_T0072371.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68388596 68390619 - 9130230L23Rik protein_coding retained_intron MGP_C57BL6NJ_T0072372.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68389632 68400635 - 9130230L23Rik protein_coding retained_intron MGP_C57BL6NJ_T0072373.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68398979 68417683 - 9130230L23Rik protein_coding retained_intron MGP_C57BL6NJ_T0072374.1 MGP_C57BL6NJ_G0030017.1 mouse_genomes_project 5 68400364 68401093 - 9130230L23Rik protein_coding retained_intron MGP_C57BL6NJ_T0001745.1 MGP_C57BL6NJ_G0001640.1 mouse_genomes_project 5 59386873 59388820 + TEC TEC MGP_C57BL6NJ_T0070713.1 MGP_C57BL6NJ_G0029732.1 mouse_genomes_project 5 16151329 16157579 + MGP_C57BL6NJ_P0070713 protein_coding protein_coding MGP_C57BL6NJ_T0001607.1 MGP_C57BL6NJ_G0001506.1 mouse_genomes_project 5 21815559 21818630 + TEC TEC MGP_C57BL6NJ_T0015277.1 MGP_C57BL6NJ_G0013322.1 mouse_genomes_project 5 20884803 20885088 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072775.1 MGP_C57BL6NJ_G0030088.1 mouse_genomes_project 5 80643356 80658975 - MGP_C57BL6NJ_P0072775 Noa1 protein_coding protein_coding MGP_C57BL6NJ_T0072776.1 MGP_C57BL6NJ_G0030088.1 mouse_genomes_project 5 80652308 80653155 - Noa1 protein_coding processed_transcript MGP_C57BL6NJ_T0072777.1 MGP_C57BL6NJ_G0030088.1 mouse_genomes_project 5 80653819 80658950 - Noa1 protein_coding retained_intron MGP_C57BL6NJ_T0072778.1 MGP_C57BL6NJ_G0030088.1 mouse_genomes_project 5 80654497 80656534 - Noa1 protein_coding processed_transcript MGP_C57BL6NJ_T0015338.1 MGP_C57BL6NJ_G0013383.1 mouse_genomes_project 5 38867048 38867252 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070481.1 MGP_C57BL6NJ_G0029695.1 mouse_genomes_project 5 938444 963424 + MGP_C57BL6NJ_P0070481 Lrrd1 protein_coding protein_coding MGP_C57BL6NJ_T0070482.1 MGP_C57BL6NJ_G0029695.1 mouse_genomes_project 5 938458 945363 + MGP_C57BL6NJ_P0070482 Lrrd1 protein_coding protein_coding MGP_C57BL6NJ_T0071213.1 MGP_C57BL6NJ_G0029829.1 mouse_genomes_project 5 30642465 30644369 - MGP_C57BL6NJ_P0071213 Ost4 protein_coding protein_coding MGP_C57BL6NJ_T0071214.1 MGP_C57BL6NJ_G0029829.1 mouse_genomes_project 5 30643098 30644306 - MGP_C57BL6NJ_P0071214 Ost4 protein_coding protein_coding MGP_C57BL6NJ_T0102266.1 MGP_C57BL6NJ_G0040253.1 mouse_genomes_project 5 59510442 59511016 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0072673.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78764455 78851376 + MGP_C57BL6NJ_P0072673 Kit protein_coding protein_coding MGP_C57BL6NJ_T0072674.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78764494 78851376 + MGP_C57BL6NJ_P0072674 Kit protein_coding protein_coding MGP_C57BL6NJ_T0072675.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78806760 78817136 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0072676.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78833277 78835187 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0072677.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78838527 78840662 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0072678.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78840374 78847510 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0072679.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78843759 78851348 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0072680.1 MGP_C57BL6NJ_G0030069.1 mouse_genomes_project 5 78843858 78846951 + Kit protein_coding retained_intron MGP_C57BL6NJ_T0102261.1 MGP_C57BL6NJ_G0040249.1 mouse_genomes_project 5 33191288 33192450 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102262.1 MGP_C57BL6NJ_G0040249.1 mouse_genomes_project 5 33191975 33192762 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0015492.1 MGP_C57BL6NJ_G0013537.1 mouse_genomes_project 5 112383246 112383856 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076508.1 MGP_C57BL6NJ_G0030839.1 mouse_genomes_project 5 160926189 160937424 + Medag protein_coding retained_intron MGP_C57BL6NJ_T0076509.1 MGP_C57BL6NJ_G0030839.1 mouse_genomes_project 5 160926395 160944301 + MGP_C57BL6NJ_P0076509 Medag protein_coding protein_coding MGP_C57BL6NJ_T0071719.1 MGP_C57BL6NJ_G0029903.1 mouse_genomes_project 5 35061805 35074161 + Msantd1 protein_coding processed_transcript MGP_C57BL6NJ_T0071720.1 MGP_C57BL6NJ_G0029903.1 mouse_genomes_project 5 35072259 35080184 + MGP_C57BL6NJ_P0071720 Msantd1 protein_coding protein_coding MGP_C57BL6NJ_T0071721.1 MGP_C57BL6NJ_G0029903.1 mouse_genomes_project 5 35073883 35080035 + MGP_C57BL6NJ_P0071721 Msantd1 protein_coding protein_coding MGP_C57BL6NJ_T0001615.1 MGP_C57BL6NJ_G0001513.1 mouse_genomes_project 5 25043183 25045206 - TEC TEC MGP_C57BL6NJ_T0001726.1 MGP_C57BL6NJ_G0001621.1 mouse_genomes_project 5 52945033 52950243 - TEC TEC MGP_C57BL6NJ_T0015317.1 MGP_C57BL6NJ_G0013362.1 mouse_genomes_project 5 32053776 32054359 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015327.1 MGP_C57BL6NJ_G0013372.1 mouse_genomes_project 5 33765921 33766171 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001929.1 MGP_C57BL6NJ_G0001822.1 mouse_genomes_project 5 126503171 126504793 + TEC TEC MGP_C57BL6NJ_T0073692.1 MGP_C57BL6NJ_G0030305.1 mouse_genomes_project 5 116922612 116922867 - MGP_C57BL6NJ_P0073692 protein_coding protein_coding MGP_C57BL6NJ_T0001946.1 MGP_C57BL6NJ_G0001839.1 mouse_genomes_project 5 130967365 130969565 - TEC TEC MGP_C57BL6NJ_T0072434.1 MGP_C57BL6NJ_G0030023.1 mouse_genomes_project 5 69619615 69624518 - MGP_C57BL6NJ_P0072434 Phox2b protein_coding protein_coding MGP_C57BL6NJ_T0072435.1 MGP_C57BL6NJ_G0030023.1 mouse_genomes_project 5 69622260 69624274 - MGP_C57BL6NJ_P0072435 Phox2b protein_coding protein_coding MGP_C57BL6NJ_T0102260.1 MGP_C57BL6NJ_G0040248.1 mouse_genomes_project 5 28787270 28788112 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0100422.1 MGP_C57BL6NJ_G0038468.1 mouse_genomes_project 5 7404131 7404233 - Gm23312 snRNA snRNA MGP_C57BL6NJ_T0002038.1 MGP_C57BL6NJ_G0001929.1 mouse_genomes_project 5 154574355 154579226 + TEC TEC MGP_C57BL6NJ_T0004893.1 MGP_C57BL6NJ_G0004228.1 mouse_genomes_project 5 95819530 95837151 - Gm42532 antisense antisense MGP_C57BL6NJ_T0008510.1 MGP_C57BL6NJ_G0006915.1 mouse_genomes_project 5 124971524 124974568 - BC051077 lincRNA lincRNA MGP_C57BL6NJ_T0015323.1 MGP_C57BL6NJ_G0013368.1 mouse_genomes_project 5 33074713 33074928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070837.1 MGP_C57BL6NJ_G0029758.1 mouse_genomes_project 5 21784173 22384982 + MGP_C57BL6NJ_P0070837 Lhfpl3 protein_coding protein_coding MGP_C57BL6NJ_T0070838.1 MGP_C57BL6NJ_G0029758.1 mouse_genomes_project 5 22183103 22384973 + MGP_C57BL6NJ_P0070838 Lhfpl3 protein_coding protein_coding MGP_C57BL6NJ_T0071399.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344351 31362514 + MGP_C57BL6NJ_P0071399 Gpn1 protein_coding protein_coding MGP_C57BL6NJ_T0071400.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344362 31352635 + Gpn1 protein_coding retained_intron MGP_C57BL6NJ_T0071401.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344363 31347327 + MGP_C57BL6NJ_P0071401 Gpn1 protein_coding protein_coding MGP_C57BL6NJ_T0071402.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344377 31348893 + MGP_C57BL6NJ_P0071402 Gpn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071403.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344404 31353141 + Gpn1 protein_coding retained_intron MGP_C57BL6NJ_T0071404.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31344611 31346935 + Gpn1 protein_coding processed_transcript MGP_C57BL6NJ_T0071405.1 MGP_C57BL6NJ_G0029857.1 mouse_genomes_project 5 31356670 31360469 + Gpn1 protein_coding retained_intron MGP_C57BL6NJ_T0011867.1 MGP_C57BL6NJ_G0009952.1 mouse_genomes_project 5 118243908 118244019 - Gm27602 misc_RNA misc_RNA MGP_C57BL6NJ_T0001732.1 MGP_C57BL6NJ_G0001627.1 mouse_genomes_project 5 53271203 53272589 - TEC TEC MGP_C57BL6NJ_T0008304.1 MGP_C57BL6NJ_G0006766.1 mouse_genomes_project 5 45718979 45730908 + 4930431F12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008497.1 MGP_C57BL6NJ_G0006905.1 mouse_genomes_project 5 122778396 122779820 - 4930401G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0101770.1 MGP_C57BL6NJ_G0039816.1 mouse_genomes_project 5 158434658 158434788 - Gm24556 snoRNA snoRNA MGP_C57BL6NJ_T0099476.1 MGP_C57BL6NJ_G0037533.1 mouse_genomes_project 5 124144313 124147009 - sense_intronic sense_intronic MGP_C57BL6NJ_T0008621.1 MGP_C57BL6NJ_G0006991.1 mouse_genomes_project 5 157875246 157876121 + 4930573C15Rik lincRNA lincRNA MGP_C57BL6NJ_T0005038.1 MGP_C57BL6NJ_G0004326.1 mouse_genomes_project 5 150645880 150650712 + Gm16120 antisense antisense MGP_C57BL6NJ_T0005039.1 MGP_C57BL6NJ_G0004326.1 mouse_genomes_project 5 150649502 150650712 + Gm16120 antisense antisense MGP_C57BL6NJ_T0076386.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158014372 158018515 + MGP_C57BL6NJ_P0076386 Rpl21 protein_coding protein_coding MGP_C57BL6NJ_T0076387.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158014628 158016088 + Rpl21 protein_coding retained_intron MGP_C57BL6NJ_T0076388.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158014677 158017468 + MGP_C57BL6NJ_P0076388 Rpl21 protein_coding protein_coding MGP_C57BL6NJ_T0076389.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158014684 158017469 + MGP_C57BL6NJ_P0076389 Rpl21 protein_coding protein_coding MGP_C57BL6NJ_T0076390.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158015666 158016447 + Rpl21 protein_coding retained_intron MGP_C57BL6NJ_T0076391.1 MGP_C57BL6NJ_G0030816.1 mouse_genomes_project 5 158016688 158017469 + Rpl21 protein_coding retained_intron MGP_C57BL6NJ_T0001719.1 MGP_C57BL6NJ_G0001614.1 mouse_genomes_project 5 50927358 50928508 - TEC TEC MGP_C57BL6NJ_T0008597.1 MGP_C57BL6NJ_G0006970.1 mouse_genomes_project 5 147260718 147277957 - Gm42456 lincRNA lincRNA MGP_C57BL6NJ_T0075208.1 MGP_C57BL6NJ_G0030580.1 mouse_genomes_project 5 140213890 140674521 - MGP_C57BL6NJ_P0075208 Wbscr17 protein_coding protein_coding MGP_C57BL6NJ_T0075209.1 MGP_C57BL6NJ_G0030580.1 mouse_genomes_project 5 140309893 140674100 - MGP_C57BL6NJ_P0075209 Wbscr17 protein_coding protein_coding MGP_C57BL6NJ_T0075210.1 MGP_C57BL6NJ_G0030580.1 mouse_genomes_project 5 140426863 140672939 - Wbscr17 protein_coding retained_intron MGP_C57BL6NJ_T0075211.1 MGP_C57BL6NJ_G0030580.1 mouse_genomes_project 5 140497434 140673897 - Wbscr17 protein_coding retained_intron MGP_C57BL6NJ_T0075212.1 MGP_C57BL6NJ_G0030580.1 mouse_genomes_project 5 140672873 140674102 - Wbscr17 protein_coding processed_transcript MGP_C57BL6NJ_T0002040.1 MGP_C57BL6NJ_G0001931.1 mouse_genomes_project 5 156229717 156232699 + TEC TEC MGP_C57BL6NJ_T0074180.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122921080 122927310 - MGP_C57BL6NJ_P0074180 Sirt4 protein_coding protein_coding MGP_C57BL6NJ_T0074181.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122921080 122927738 - MGP_C57BL6NJ_P0074181 Sirt4 protein_coding protein_coding MGP_C57BL6NJ_T0074182.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122921083 122922947 - Sirt4 protein_coding retained_intron MGP_C57BL6NJ_T0074183.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122923168 122925869 - Sirt4 protein_coding retained_intron MGP_C57BL6NJ_T0074184.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122923239 122927358 - Sirt4 protein_coding processed_transcript MGP_C57BL6NJ_T0074185.1 MGP_C57BL6NJ_G0030401.1 mouse_genomes_project 5 122925474 122927379 - Sirt4 protein_coding retained_intron MGP_C57BL6NJ_T0008405.1 MGP_C57BL6NJ_G0006849.1 mouse_genomes_project 5 105631103 105642492 + lincRNA lincRNA MGP_C57BL6NJ_T0073838.1 MGP_C57BL6NJ_G0030331.1 mouse_genomes_project 5 119314263 119330381 + MGP_C57BL6NJ_P0073838 Crybb1 protein_coding protein_coding MGP_C57BL6NJ_T0073839.1 MGP_C57BL6NJ_G0030331.1 mouse_genomes_project 5 119314293 119330253 + MGP_C57BL6NJ_P0073839 Crybb1 protein_coding protein_coding MGP_C57BL6NJ_T0073840.1 MGP_C57BL6NJ_G0030331.1 mouse_genomes_project 5 119314322 119330298 + MGP_C57BL6NJ_P0073840 Crybb1 protein_coding protein_coding MGP_C57BL6NJ_T0076456.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159314551 159714423 + MGP_C57BL6NJ_P0076456 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076457.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159314573 159455312 + MGP_C57BL6NJ_P0076457 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076458.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159461660 159627575 + Mtus2 protein_coding retained_intron MGP_C57BL6NJ_T0076459.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159478699 159599733 + Mtus2 protein_coding processed_transcript MGP_C57BL6NJ_T0076460.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159590037 159714420 + MGP_C57BL6NJ_P0076460 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076461.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159629905 159633086 + Mtus2 protein_coding retained_intron MGP_C57BL6NJ_T0076462.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159658236 159712429 + MGP_C57BL6NJ_P0076462 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076463.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159658311 159711910 + MGP_C57BL6NJ_P0076463 Mtus2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076464.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159658364 159712396 + MGP_C57BL6NJ_P0076464 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076465.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159703727 159711818 + MGP_C57BL6NJ_P0076465 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0076466.1 MGP_C57BL6NJ_G0030831.1 mouse_genomes_project 5 159703736 159712358 + MGP_C57BL6NJ_P0076466 Mtus2 protein_coding protein_coding MGP_C57BL6NJ_T0008627.1 MGP_C57BL6NJ_G0006997.1 mouse_genomes_project 5 160149538 160156391 + Gm36186 lincRNA lincRNA MGP_C57BL6NJ_T0073682.1 MGP_C57BL6NJ_G0030298.1 mouse_genomes_project 5 115783260 115812916 - MGP_C57BL6NJ_P0073682 Vmn2r12 protein_coding protein_coding MGP_C57BL6NJ_T0015343.1 MGP_C57BL6NJ_G0013388.1 mouse_genomes_project 5 42010618 42011087 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001821.1 MGP_C57BL6NJ_G0001714.1 mouse_genomes_project 5 76031074 76034483 - TEC TEC MGP_C57BL6NJ_T0076326.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156126576 156145589 + MGP_C57BL6NJ_P0076326 Zkscan5 protein_coding protein_coding MGP_C57BL6NJ_T0076327.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156126682 156145589 + MGP_C57BL6NJ_P0076327 Zkscan5 protein_coding protein_coding MGP_C57BL6NJ_T0076328.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156127137 156142401 + MGP_C57BL6NJ_P0076328 Zkscan5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076329.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156130200 156142265 + MGP_C57BL6NJ_P0076329 Zkscan5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076330.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156130230 156142319 + MGP_C57BL6NJ_P0076330 Zkscan5 protein_coding protein_coding MGP_C57BL6NJ_T0076331.1 MGP_C57BL6NJ_G0030794.1 mouse_genomes_project 5 156132398 156142135 + Zkscan5 protein_coding processed_transcript MGP_C57BL6NJ_T0073757.1 MGP_C57BL6NJ_G0030316.1 mouse_genomes_project 5 117241396 117252631 + Lrcol1 protein_coding retained_intron MGP_C57BL6NJ_T0073758.1 MGP_C57BL6NJ_G0030316.1 mouse_genomes_project 5 117241396 117252631 + MGP_C57BL6NJ_P0073758 Lrcol1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073759.1 MGP_C57BL6NJ_G0030316.1 mouse_genomes_project 5 117241396 117252631 + MGP_C57BL6NJ_P0073759 Lrcol1 protein_coding protein_coding MGP_C57BL6NJ_T0073760.1 MGP_C57BL6NJ_G0030316.1 mouse_genomes_project 5 117250727 117252704 + MGP_C57BL6NJ_P0073760 Lrcol1 protein_coding protein_coding MGP_C57BL6NJ_T0073761.1 MGP_C57BL6NJ_G0030316.1 mouse_genomes_project 5 117250789 117252641 + MGP_C57BL6NJ_P0073761 Lrcol1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001768.1 MGP_C57BL6NJ_G0001662.1 mouse_genomes_project 5 67726029 67728406 - TEC TEC MGP_C57BL6NJ_T0074322.1 MGP_C57BL6NJ_G0030423.1 mouse_genomes_project 5 125807514 125908550 - MGP_C57BL6NJ_P0074322 Fbxw8 protein_coding protein_coding MGP_C57BL6NJ_T0074323.1 MGP_C57BL6NJ_G0030423.1 mouse_genomes_project 5 125819601 125908512 - Fbxw8 protein_coding retained_intron MGP_C57BL6NJ_T0001883.1 MGP_C57BL6NJ_G0001776.1 mouse_genomes_project 5 113633859 113637429 - TEC TEC MGP_C57BL6NJ_T0015434.1 MGP_C57BL6NJ_G0013479.1 mouse_genomes_project 5 88826864 88827978 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073929.1 MGP_C57BL6NJ_G0030350.1 mouse_genomes_project 5 120888392 120920609 - MGP_C57BL6NJ_P0073929 1700069L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0073930.1 MGP_C57BL6NJ_G0030350.1 mouse_genomes_project 5 120896243 120900492 - 1700069L16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0073931.1 MGP_C57BL6NJ_G0030350.1 mouse_genomes_project 5 120899740 120920586 - MGP_C57BL6NJ_P0073931 1700069L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0001608.1 MGP_C57BL6NJ_G0001507.1 mouse_genomes_project 5 21928833 21933567 - TEC TEC MGP_C57BL6NJ_T0015579.1 MGP_C57BL6NJ_G0013624.1 mouse_genomes_project 5 150915791 150916265 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015354.1 MGP_C57BL6NJ_G0013399.1 mouse_genomes_project 5 48888408 48888835 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008220.1 MGP_C57BL6NJ_G0006712.1 mouse_genomes_project 5 12115604 12193684 - Gm43716 lincRNA lincRNA MGP_C57BL6NJ_T0072214.1 MGP_C57BL6NJ_G0029988.1 mouse_genomes_project 5 55241991 55371894 + MGP_C57BL6NJ_P0072214 Stim2 protein_coding protein_coding MGP_C57BL6NJ_T0072215.1 MGP_C57BL6NJ_G0029988.1 mouse_genomes_project 5 55242310 55369586 + MGP_C57BL6NJ_P0072215 Stim2 protein_coding protein_coding MGP_C57BL6NJ_T0072216.1 MGP_C57BL6NJ_G0029988.1 mouse_genomes_project 5 55366693 55369424 + Stim2 protein_coding retained_intron MGP_C57BL6NJ_T0071601.1 MGP_C57BL6NJ_G0029886.1 mouse_genomes_project 5 33987340 34022735 - MGP_C57BL6NJ_P0071601 Nelfa protein_coding protein_coding MGP_C57BL6NJ_T0071602.1 MGP_C57BL6NJ_G0029886.1 mouse_genomes_project 5 34005388 34022572 - Nelfa protein_coding retained_intron MGP_C57BL6NJ_T0004844.1 MGP_C57BL6NJ_G0004188.1 mouse_genomes_project 5 44805460 44807532 + Gm16401 antisense antisense MGP_C57BL6NJ_T0004845.1 MGP_C57BL6NJ_G0004188.1 mouse_genomes_project 5 44805460 44807534 + Gm16401 antisense antisense MGP_C57BL6NJ_T0001981.1 MGP_C57BL6NJ_G0001873.1 mouse_genomes_project 5 139391823 139392321 + TEC TEC MGP_C57BL6NJ_T0103193.1 MGP_C57BL6NJ_G0040987.1 mouse_genomes_project 5 60005974 60006934 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0072925.1 MGP_C57BL6NJ_G0030123.1 mouse_genomes_project 5 92424737 92442074 + MGP_C57BL6NJ_P0072925 Csn1s2b protein_coding protein_coding MGP_C57BL6NJ_T0072926.1 MGP_C57BL6NJ_G0030123.1 mouse_genomes_project 5 92424778 92442065 + MGP_C57BL6NJ_P0072926 Csn1s2b protein_coding protein_coding MGP_C57BL6NJ_T0072927.1 MGP_C57BL6NJ_G0030123.1 mouse_genomes_project 5 92424779 92435086 + MGP_C57BL6NJ_P0072927 Csn1s2b protein_coding protein_coding MGP_C57BL6NJ_T0072928.1 MGP_C57BL6NJ_G0030123.1 mouse_genomes_project 5 92424782 92441969 + MGP_C57BL6NJ_P0072928 Csn1s2b protein_coding protein_coding MGP_C57BL6NJ_T0072929.1 MGP_C57BL6NJ_G0030123.1 mouse_genomes_project 5 92428022 92430085 + Csn1s2b protein_coding retained_intron MGP_C57BL6NJ_T0001912.1 MGP_C57BL6NJ_G0001805.1 mouse_genomes_project 5 122410734 122412049 + TEC TEC MGP_C57BL6NJ_T0008591.1 MGP_C57BL6NJ_G0006967.1 mouse_genomes_project 5 146890100 146908068 + 4933404O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008592.1 MGP_C57BL6NJ_G0006967.1 mouse_genomes_project 5 146890135 146904728 + 4933404O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008593.1 MGP_C57BL6NJ_G0006967.1 mouse_genomes_project 5 146890306 146904647 + 4933404O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008594.1 MGP_C57BL6NJ_G0006967.1 mouse_genomes_project 5 146890355 146908074 + 4933404O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008472.1 MGP_C57BL6NJ_G0006891.1 mouse_genomes_project 5 118964333 118968765 - Gm42488 lincRNA lincRNA MGP_C57BL6NJ_T0008303.1 MGP_C57BL6NJ_G0006765.1 mouse_genomes_project 5 45617082 45630253 + Gm42750 lincRNA lincRNA MGP_C57BL6NJ_T0103210.1 MGP_C57BL6NJ_G0041004.1 mouse_genomes_project 5 105922303 106068773 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001940.1 MGP_C57BL6NJ_G0001833.1 mouse_genomes_project 5 129853795 129856009 + TEC TEC MGP_C57BL6NJ_T0100436.1 MGP_C57BL6NJ_G0038482.1 mouse_genomes_project 5 34662317 34662422 + Gm22847 snRNA snRNA MGP_C57BL6NJ_T0001738.1 MGP_C57BL6NJ_G0001633.1 mouse_genomes_project 5 56871618 56875218 + TEC TEC MGP_C57BL6NJ_T0001691.1 MGP_C57BL6NJ_G0001587.1 mouse_genomes_project 5 49138374 49140948 + TEC TEC MGP_C57BL6NJ_T0075881.1 MGP_C57BL6NJ_G0030701.1 mouse_genomes_project 5 148837601 148838543 - Zfp68 protein_coding processed_transcript MGP_C57BL6NJ_T0075882.1 MGP_C57BL6NJ_G0030701.1 mouse_genomes_project 5 148837724 148850931 - MGP_C57BL6NJ_P0075882 Zfp68 protein_coding protein_coding MGP_C57BL6NJ_T0075883.1 MGP_C57BL6NJ_G0030701.1 mouse_genomes_project 5 148843345 148850932 - MGP_C57BL6NJ_P0075883 Zfp68 protein_coding protein_coding MGP_C57BL6NJ_T0075884.1 MGP_C57BL6NJ_G0030701.1 mouse_genomes_project 5 148847465 148851017 - Zfp68 protein_coding retained_intron MGP_C57BL6NJ_T0005011.1 MGP_C57BL6NJ_G0004307.1 mouse_genomes_project 5 144186375 144194549 + Gm42884 antisense antisense MGP_C57BL6NJ_T0005012.1 MGP_C57BL6NJ_G0004307.1 mouse_genomes_project 5 144192810 144194749 + Gm42884 antisense antisense MGP_C57BL6NJ_T0071363.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31060061 31098060 - MGP_C57BL6NJ_P0071363 Ift172 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071364.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31060064 31098155 - MGP_C57BL6NJ_P0071364 Ift172 protein_coding protein_coding MGP_C57BL6NJ_T0071365.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31060067 31061441 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071366.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31060340 31061598 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071367.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31067619 31068385 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071368.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31068493 31071062 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071369.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31069970 31070770 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071370.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31073479 31087477 - MGP_C57BL6NJ_P0071370 Ift172 protein_coding protein_coding MGP_C57BL6NJ_T0071371.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31078697 31088498 - MGP_C57BL6NJ_P0071371 Ift172 protein_coding protein_coding MGP_C57BL6NJ_T0071372.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31082565 31098087 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071373.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31092522 31093635 - Ift172 protein_coding retained_intron MGP_C57BL6NJ_T0071374.1 MGP_C57BL6NJ_G0029852.1 mouse_genomes_project 5 31093162 31098164 - MGP_C57BL6NJ_P0071374 Ift172 protein_coding protein_coding MGP_C57BL6NJ_T0073286.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075391 106092645 - Sec31a protein_coding retained_intron MGP_C57BL6NJ_T0073287.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075391 106129969 - MGP_C57BL6NJ_P0073287 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073288.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075392 106087216 - MGP_C57BL6NJ_P0073288 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073289.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075396 106129910 - MGP_C57BL6NJ_P0073289 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073290.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075750 106109634 - MGP_C57BL6NJ_P0073290 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073291.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075888 106078013 - Sec31a protein_coding retained_intron MGP_C57BL6NJ_T0073292.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106075953 106096579 - MGP_C57BL6NJ_P0073292 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073293.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106079496 106092731 - MGP_C57BL6NJ_P0073293 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073294.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106096610 106106346 - MGP_C57BL6NJ_P0073294 Sec31a protein_coding protein_coding MGP_C57BL6NJ_T0073295.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106115175 106119304 - Sec31a protein_coding processed_transcript MGP_C57BL6NJ_T0073296.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106121414 106123345 - Sec31a protein_coding retained_intron MGP_C57BL6NJ_T0073297.1 MGP_C57BL6NJ_G0030216.1 mouse_genomes_project 5 106129138 106129901 - Sec31a protein_coding retained_intron MGP_C57BL6NJ_T0005041.1 MGP_C57BL6NJ_G0004328.1 mouse_genomes_project 5 152179982 152197957 - Gm16036 antisense antisense MGP_C57BL6NJ_T0075477.1 MGP_C57BL6NJ_G0030623.1 mouse_genomes_project 5 145720352 145725123 + MGP_C57BL6NJ_P0075477 Hspb1 protein_coding protein_coding MGP_C57BL6NJ_T0075478.1 MGP_C57BL6NJ_G0030623.1 mouse_genomes_project 5 145720451 145725121 + MGP_C57BL6NJ_P0075478 Hspb1 protein_coding protein_coding MGP_C57BL6NJ_T0072872.1 MGP_C57BL6NJ_G0030107.1 mouse_genomes_project 5 91392439 91402169 - MGP_C57BL6NJ_P0072872 Ugt2b1 protein_coding protein_coding MGP_C57BL6NJ_T0004887.1 MGP_C57BL6NJ_G0004223.1 mouse_genomes_project 5 91175172 91205527 + Gm16579 antisense antisense MGP_C57BL6NJ_T0100420.1 MGP_C57BL6NJ_G0038466.1 mouse_genomes_project 5 4576256 4576407 - Gm24525 snRNA snRNA MGP_C57BL6NJ_T0008316.1 MGP_C57BL6NJ_G0006777.1 mouse_genomes_project 5 54474470 54476170 + lincRNA lincRNA MGP_C57BL6NJ_T0008335.1 MGP_C57BL6NJ_G0006792.1 mouse_genomes_project 5 66882019 66883762 + Gm42565 lincRNA lincRNA MGP_C57BL6NJ_T0001602.1 MGP_C57BL6NJ_G0001501.1 mouse_genomes_project 5 17997653 18000776 - TEC TEC MGP_C57BL6NJ_T0008622.1 MGP_C57BL6NJ_G0006992.1 mouse_genomes_project 5 157970159 157980676 + Gm43741 lincRNA lincRNA MGP_C57BL6NJ_T0005000.1 MGP_C57BL6NJ_G0004298.1 mouse_genomes_project 5 133888615 133892134 + Gm42839 antisense antisense MGP_C57BL6NJ_T0015559.1 MGP_C57BL6NJ_G0013604.1 mouse_genomes_project 5 145731787 145731944 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004960.1 MGP_C57BL6NJ_G0004272.1 mouse_genomes_project 5 124977410 124978158 - Gm10399 antisense antisense MGP_C57BL6NJ_T0004961.1 MGP_C57BL6NJ_G0004272.1 mouse_genomes_project 5 124977658 124978156 - Gm10399 antisense antisense MGP_C57BL6NJ_T0001791.1 MGP_C57BL6NJ_G0001685.1 mouse_genomes_project 5 68917334 68918014 - TEC TEC MGP_C57BL6NJ_T0076394.1 MGP_C57BL6NJ_G0030818.1 mouse_genomes_project 5 158144951 158151909 + MGP_C57BL6NJ_P0076394 Gtf3a protein_coding protein_coding MGP_C57BL6NJ_T0076395.1 MGP_C57BL6NJ_G0030818.1 mouse_genomes_project 5 158144992 158151898 + Gtf3a protein_coding retained_intron MGP_C57BL6NJ_T0076396.1 MGP_C57BL6NJ_G0030818.1 mouse_genomes_project 5 158144999 158151901 + MGP_C57BL6NJ_P0076396 Gtf3a protein_coding protein_coding MGP_C57BL6NJ_T0076397.1 MGP_C57BL6NJ_G0030818.1 mouse_genomes_project 5 158146301 158151898 + Gtf3a protein_coding retained_intron MGP_C57BL6NJ_T0072568.1 MGP_C57BL6NJ_G0030050.1 mouse_genomes_project 5 75920870 75929766 - MGP_C57BL6NJ_P0072568 Gm10135 protein_coding protein_coding MGP_C57BL6NJ_T0076383.1 MGP_C57BL6NJ_G0030815.1 mouse_genomes_project 5 157907244 157969248 - MGP_C57BL6NJ_P0076383 Usp12 protein_coding protein_coding MGP_C57BL6NJ_T0076384.1 MGP_C57BL6NJ_G0030815.1 mouse_genomes_project 5 157907274 157930227 - Usp12 protein_coding processed_transcript MGP_C57BL6NJ_T0076385.1 MGP_C57BL6NJ_G0030815.1 mouse_genomes_project 5 157913661 157930235 - Usp12 protein_coding processed_transcript MGP_C57BL6NJ_T0018664.1 MGP_C57BL6NJ_G0016008.1 mouse_genomes_project 5 149413334 149416452 - Gm15672 processed_transcript processed_transcript MGP_C57BL6NJ_T0073077.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96919856 96950972 - MGP_C57BL6NJ_P0073077 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073078.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96919874 96951134 - MGP_C57BL6NJ_P0073078 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073079.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96921427 96950653 - MGP_C57BL6NJ_P0073079 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073080.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96921427 96950928 - MGP_C57BL6NJ_P0073080 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073081.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96922210 96951073 - MGP_C57BL6NJ_P0073081 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073082.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96924070 96935211 - G3bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0073083.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96925531 96935202 - G3bp2 protein_coding retained_intron MGP_C57BL6NJ_T0073084.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96934213 96941128 - MGP_C57BL6NJ_P0073084 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073085.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96936003 96950678 - MGP_C57BL6NJ_P0073085 G3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0073086.1 MGP_C57BL6NJ_G0030172.1 mouse_genomes_project 5 96937505 96951132 - G3bp2 protein_coding retained_intron MGP_C57BL6NJ_T0010918.1 MGP_C57BL6NJ_G0009003.1 mouse_genomes_project 5 29872551 29872629 + Mir1960 miRNA miRNA MGP_C57BL6NJ_T0004877.1 MGP_C57BL6NJ_G0004215.1 mouse_genomes_project 5 77080745 77096328 + Usp46os1 antisense antisense MGP_C57BL6NJ_T0073152.1 MGP_C57BL6NJ_G0030184.1 mouse_genomes_project 5 97507029 97508803 + MGP_C57BL6NJ_P0073152 Stbd1 protein_coding protein_coding MGP_C57BL6NJ_T0073153.1 MGP_C57BL6NJ_G0030184.1 mouse_genomes_project 5 97507039 97510563 + MGP_C57BL6NJ_P0073153 Stbd1 protein_coding protein_coding MGP_C57BL6NJ_T0073154.1 MGP_C57BL6NJ_G0030184.1 mouse_genomes_project 5 97507056 97510278 + MGP_C57BL6NJ_P0073154 Stbd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001795.1 MGP_C57BL6NJ_G0001689.1 mouse_genomes_project 5 69177705 69180217 + TEC TEC MGP_C57BL6NJ_T0004931.1 MGP_C57BL6NJ_G0004251.1 mouse_genomes_project 5 117167336 117170315 + antisense antisense MGP_C57BL6NJ_T0004932.1 MGP_C57BL6NJ_G0004251.1 mouse_genomes_project 5 117169988 117170625 + antisense antisense MGP_C57BL6NJ_T0015430.1 MGP_C57BL6NJ_G0013475.1 mouse_genomes_project 5 83234157 83235268 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100488.1 MGP_C57BL6NJ_G0038534.1 mouse_genomes_project 5 132002315 132002484 + Gm23458 snRNA snRNA MGP_C57BL6NJ_T0073112.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97225788 97293788 + MGP_C57BL6NJ_P0073112 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073113.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97225791 97293985 + MGP_C57BL6NJ_P0073113 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073114.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97225802 97242609 + Art3 protein_coding processed_transcript MGP_C57BL6NJ_T0073115.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97225802 97316814 + MGP_C57BL6NJ_P0073115 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073116.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97225802 97316817 + MGP_C57BL6NJ_P0073116 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073121.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97275179 97293900 + MGP_C57BL6NJ_P0073121 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073122.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97287740 97293871 + MGP_C57BL6NJ_P0073122 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073123.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288616 97293579 + MGP_C57BL6NJ_P0073123 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073124.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288699 97293449 + MGP_C57BL6NJ_P0073124 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073125.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288704 97293830 + MGP_C57BL6NJ_P0073125 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073126.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316811 + Art3 protein_coding processed_transcript MGP_C57BL6NJ_T0073127.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316811 + MGP_C57BL6NJ_P0073127 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073128.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316811 + MGP_C57BL6NJ_P0073128 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073129.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316811 + MGP_C57BL6NJ_P0073129 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073130.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316812 + MGP_C57BL6NJ_P0073130 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073131.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97288996 97316811 + MGP_C57BL6NJ_P0073131 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073132.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97293438 97316811 + MGP_C57BL6NJ_P0073132 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073133.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97293912 97316812 + MGP_C57BL6NJ_P0073133 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0073134.1 MGP_C57BL6NJ_G0030179.1 mouse_genomes_project 5 97304195 97316636 + MGP_C57BL6NJ_P0073134 Art3 protein_coding protein_coding MGP_C57BL6NJ_T0002039.1 MGP_C57BL6NJ_G0001930.1 mouse_genomes_project 5 155022968 155024764 + TEC TEC MGP_C57BL6NJ_T0008275.1 MGP_C57BL6NJ_G0006747.1 mouse_genomes_project 5 36687499 36708188 - 2210406O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008276.1 MGP_C57BL6NJ_G0006747.1 mouse_genomes_project 5 36698340 36708179 - 2210406O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008277.1 MGP_C57BL6NJ_G0006747.1 mouse_genomes_project 5 36699142 36708178 - 2210406O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008278.1 MGP_C57BL6NJ_G0006747.1 mouse_genomes_project 5 36701759 36708220 - 2210406O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0071485.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866027 32897996 + MGP_C57BL6NJ_P0071485 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071486.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866032 32907807 + MGP_C57BL6NJ_P0071486 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071487.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866039 32870325 + MGP_C57BL6NJ_P0071487 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071488.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866047 32970979 + MGP_C57BL6NJ_P0071488 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071489.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866057 33006901 + MGP_C57BL6NJ_P0071489 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071490.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866060 33009901 + MGP_C57BL6NJ_P0071490 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071491.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866086 32918481 + Depdc5 protein_coding retained_intron MGP_C57BL6NJ_T0071492.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866096 32898615 + Depdc5 protein_coding retained_intron MGP_C57BL6NJ_T0071493.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866096 32936792 + MGP_C57BL6NJ_P0071493 Depdc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071494.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866098 32889625 + MGP_C57BL6NJ_P0071494 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071495.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866103 32970977 + Depdc5 protein_coding processed_transcript MGP_C57BL6NJ_T0071496.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866481 32870337 + MGP_C57BL6NJ_P0071496 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071497.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32866913 33007331 + MGP_C57BL6NJ_P0071497 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071498.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32916010 32930542 + MGP_C57BL6NJ_P0071498 Depdc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071499.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32936817 33007324 + MGP_C57BL6NJ_P0071499 Depdc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071500.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32936915 33007331 + MGP_C57BL6NJ_P0071500 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071501.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32958480 32959695 + Depdc5 protein_coding retained_intron MGP_C57BL6NJ_T0071502.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32958775 32979402 + MGP_C57BL6NJ_P0071502 Depdc5 protein_coding protein_coding MGP_C57BL6NJ_T0071503.1 MGP_C57BL6NJ_G0029870.1 mouse_genomes_project 5 32982397 32989853 + Depdc5 protein_coding retained_intron MGP_C57BL6NJ_T0011864.1 MGP_C57BL6NJ_G0009949.1 mouse_genomes_project 5 106144250 106144429 + Gm27286 misc_RNA misc_RNA MGP_C57BL6NJ_T0073220.1 MGP_C57BL6NJ_G0030198.1 mouse_genomes_project 5 102447957 102547457 + MGP_C57BL6NJ_P0073220 Bmp2k protein_coding protein_coding MGP_C57BL6NJ_T0073221.1 MGP_C57BL6NJ_G0030198.1 mouse_genomes_project 5 102447957 102523314 + MGP_C57BL6NJ_P0073221 Bmp2k protein_coding protein_coding MGP_C57BL6NJ_T0075863.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428110 148438622 + MGP_C57BL6NJ_P0075863 Stag3 protein_coding protein_coding MGP_C57BL6NJ_T0075864.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428379 148462671 + Stag3 protein_coding retained_intron MGP_C57BL6NJ_T0075865.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428396 148462668 + Stag3 protein_coding retained_intron MGP_C57BL6NJ_T0075866.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428396 148462671 + MGP_C57BL6NJ_P0075866 Stag3 protein_coding protein_coding MGP_C57BL6NJ_T0075867.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428414 148462671 + MGP_C57BL6NJ_P0075867 Stag3 protein_coding protein_coding MGP_C57BL6NJ_T0075868.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148428426 148438277 + MGP_C57BL6NJ_P0075868 Stag3 protein_coding protein_coding MGP_C57BL6NJ_T0075869.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148448227 148450493 + Stag3 protein_coding processed_transcript MGP_C57BL6NJ_T0075870.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148453464 148458245 + MGP_C57BL6NJ_P0075870 Stag3 protein_coding protein_coding MGP_C57BL6NJ_T0075871.1 MGP_C57BL6NJ_G0030697.1 mouse_genomes_project 5 148458199 148462664 + MGP_C57BL6NJ_P0075871 Stag3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010946.1 MGP_C57BL6NJ_G0009031.1 mouse_genomes_project 5 97363547 97363647 + Mir6415 miRNA miRNA MGP_C57BL6NJ_T0072953.1 MGP_C57BL6NJ_G0030136.1 mouse_genomes_project 5 93085250 93097254 + MGP_C57BL6NJ_P0072953 Ambn protein_coding protein_coding MGP_C57BL6NJ_T0072954.1 MGP_C57BL6NJ_G0030136.1 mouse_genomes_project 5 93085270 93097603 + MGP_C57BL6NJ_P0072954 Ambn protein_coding protein_coding MGP_C57BL6NJ_T0008213.1 MGP_C57BL6NJ_G0006706.1 mouse_genomes_project 5 2869008 2872156 + lincRNA lincRNA MGP_C57BL6NJ_T0100498.1 MGP_C57BL6NJ_G0038544.1 mouse_genomes_project 5 149747400 149747507 + Gm26285 snRNA snRNA MGP_C57BL6NJ_T0011872.1 MGP_C57BL6NJ_G0009957.1 mouse_genomes_project 5 119284907 119285042 - Gm27357 misc_RNA misc_RNA MGP_C57BL6NJ_T0008374.1 MGP_C57BL6NJ_G0006822.1 mouse_genomes_project 5 91175179 91288630 + Gm43055 lincRNA lincRNA MGP_C57BL6NJ_T0001760.1 MGP_C57BL6NJ_G0001655.1 mouse_genomes_project 5 65842827 65847552 - TEC TEC MGP_C57BL6NJ_T0001761.1 MGP_C57BL6NJ_G0001655.1 mouse_genomes_project 5 65846607 65846922 - TEC TEC MGP_C57BL6NJ_T0008514.1 MGP_C57BL6NJ_G0006918.1 mouse_genomes_project 5 126701856 126704815 - lincRNA lincRNA MGP_C57BL6NJ_T0001643.1 MGP_C57BL6NJ_G0001539.1 mouse_genomes_project 5 34598242 34601774 + TEC TEC MGP_C57BL6NJ_T0001802.1 MGP_C57BL6NJ_G0001696.1 mouse_genomes_project 5 70196772 70198305 - TEC TEC MGP_C57BL6NJ_T0008414.1 MGP_C57BL6NJ_G0006854.1 mouse_genomes_project 5 107434675 107437737 + Gm20484 lincRNA lincRNA MGP_C57BL6NJ_T0071512.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33299842 33327114 - MGP_C57BL6NJ_P0071512 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071513.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33299873 33327112 - MGP_C57BL6NJ_P0071513 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071514.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33300144 33327101 - MGP_C57BL6NJ_P0071514 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071515.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33300287 33301370 - Ctbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071516.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33300380 33301673 - Ctbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071517.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33300619 33327068 - MGP_C57BL6NJ_P0071517 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071518.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33302502 33321608 - MGP_C57BL6NJ_P0071518 Ctbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071519.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33302977 33327099 - MGP_C57BL6NJ_P0071519 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071520.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33311420 33321756 - MGP_C57BL6NJ_P0071520 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071521.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33312762 33321644 - Ctbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071522.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33313179 33326699 - MGP_C57BL6NJ_P0071522 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071523.1 MGP_C57BL6NJ_G0029874.1 mouse_genomes_project 5 33319071 33326710 - MGP_C57BL6NJ_P0071523 Ctbp1 protein_coding protein_coding MGP_C57BL6NJ_T0073873.1 MGP_C57BL6NJ_G0030338.1 mouse_genomes_project 5 119497260 119657089 - MGP_C57BL6NJ_P0073873 Sez6l protein_coding protein_coding MGP_C57BL6NJ_T0073874.1 MGP_C57BL6NJ_G0030338.1 mouse_genomes_project 5 119497265 119657196 - MGP_C57BL6NJ_P0073874 Sez6l protein_coding protein_coding MGP_C57BL6NJ_T0073875.1 MGP_C57BL6NJ_G0030338.1 mouse_genomes_project 5 119497274 119657406 - MGP_C57BL6NJ_P0073875 Sez6l protein_coding protein_coding MGP_C57BL6NJ_T0073876.1 MGP_C57BL6NJ_G0030338.1 mouse_genomes_project 5 119499927 119657398 - MGP_C57BL6NJ_P0073876 Sez6l protein_coding protein_coding MGP_C57BL6NJ_T0073056.1 MGP_C57BL6NJ_G0030165.1 mouse_genomes_project 5 95836999 95861795 + MGP_C57BL6NJ_P0073056 Ereg protein_coding protein_coding MGP_C57BL6NJ_T0101768.1 MGP_C57BL6NJ_G0039814.1 mouse_genomes_project 5 158016316 158016387 + Gm25091 snoRNA snoRNA MGP_C57BL6NJ_T0004870.1 MGP_C57BL6NJ_G0004209.1 mouse_genomes_project 5 70209246 70216880 + antisense antisense MGP_C57BL6NJ_T0073062.1 MGP_C57BL6NJ_G0030168.1 mouse_genomes_project 5 96323165 96432746 + MGP_C57BL6NJ_P0073062 Parm1 protein_coding protein_coding MGP_C57BL6NJ_T0018673.1 MGP_C57BL6NJ_G0016010.1 mouse_genomes_project 5 160483517 160504045 - Gm15411 processed_transcript lincRNA MGP_C57BL6NJ_T0018674.1 MGP_C57BL6NJ_G0016010.1 mouse_genomes_project 5 160486208 160504016 - Gm15411 processed_transcript lincRNA MGP_C57BL6NJ_T0018675.1 MGP_C57BL6NJ_G0016010.1 mouse_genomes_project 5 160502023 160504045 - Gm15411 processed_transcript retained_intron MGP_C57BL6NJ_T0008531.1 MGP_C57BL6NJ_G0006932.1 mouse_genomes_project 5 128689340 128690050 + Gm15749 lincRNA lincRNA MGP_C57BL6NJ_T0075969.1 MGP_C57BL6NJ_G0030717.1 mouse_genomes_project 5 149782208 149795532 - MGP_C57BL6NJ_P0075969 Zfand2a protein_coding protein_coding MGP_C57BL6NJ_T0075970.1 MGP_C57BL6NJ_G0030717.1 mouse_genomes_project 5 149782213 149795500 - MGP_C57BL6NJ_P0075970 Zfand2a protein_coding protein_coding MGP_C57BL6NJ_T0075971.1 MGP_C57BL6NJ_G0030717.1 mouse_genomes_project 5 149785917 149789954 - Zfand2a protein_coding processed_transcript MGP_C57BL6NJ_T0075972.1 MGP_C57BL6NJ_G0030717.1 mouse_genomes_project 5 149789492 149795447 - MGP_C57BL6NJ_P0075972 Zfand2a protein_coding protein_coding MGP_C57BL6NJ_T0075973.1 MGP_C57BL6NJ_G0030717.1 mouse_genomes_project 5 149790087 149795411 - Zfand2a protein_coding processed_transcript MGP_C57BL6NJ_T0075547.1 MGP_C57BL6NJ_G0030636.1 mouse_genomes_project 5 146086317 146114594 - MGP_C57BL6NJ_P0075547 Sh2b2 protein_coding protein_coding MGP_C57BL6NJ_T0075548.1 MGP_C57BL6NJ_G0030636.1 mouse_genomes_project 5 146086319 146114643 - MGP_C57BL6NJ_P0075548 Sh2b2 protein_coding protein_coding MGP_C57BL6NJ_T0075549.1 MGP_C57BL6NJ_G0030636.1 mouse_genomes_project 5 146088537 146090833 - Sh2b2 protein_coding retained_intron MGP_C57BL6NJ_T0075550.1 MGP_C57BL6NJ_G0030636.1 mouse_genomes_project 5 146091939 146114577 - MGP_C57BL6NJ_P0075550 Sh2b2 protein_coding protein_coding MGP_C57BL6NJ_T0075551.1 MGP_C57BL6NJ_G0030636.1 mouse_genomes_project 5 146101296 146116296 - MGP_C57BL6NJ_P0075551 Sh2b2 protein_coding protein_coding MGP_C57BL6NJ_T0070677.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11437094 11643547 + Sema3a protein_coding processed_transcript MGP_C57BL6NJ_T0070678.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11437172 11626502 + Sema3a protein_coding retained_intron MGP_C57BL6NJ_T0070679.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11437273 11873274 + Sema3a protein_coding retained_intron MGP_C57BL6NJ_T0070680.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11734200 11956382 + MGP_C57BL6NJ_P0070680 Sema3a protein_coding protein_coding MGP_C57BL6NJ_T0070681.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11738626 11792862 + MGP_C57BL6NJ_P0070681 Sema3a protein_coding protein_coding MGP_C57BL6NJ_T0070682.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11738935 11954742 + MGP_C57BL6NJ_P0070682 Sema3a protein_coding protein_coding MGP_C57BL6NJ_T0070683.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11739295 11957959 + MGP_C57BL6NJ_P0070683 Sema3a protein_coding protein_coding MGP_C57BL6NJ_T0070684.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11739310 11792832 + MGP_C57BL6NJ_P0070684 Sema3a protein_coding protein_coding MGP_C57BL6NJ_T0070685.1 MGP_C57BL6NJ_G0029725.1 mouse_genomes_project 5 11739563 11842021 + Sema3a protein_coding processed_transcript MGP_C57BL6NJ_T0010961.1 MGP_C57BL6NJ_G0009046.1 mouse_genomes_project 5 123105488 123105548 + Mir7030 miRNA miRNA MGP_C57BL6NJ_T0001710.1 MGP_C57BL6NJ_G0001605.1 mouse_genomes_project 5 50003554 50007014 + TEC TEC MGP_C57BL6NJ_T0074395.1 MGP_C57BL6NJ_G0030441.1 mouse_genomes_project 5 128690112 128696203 + MGP_C57BL6NJ_P0074395 Rasal1 protein_coding protein_coding MGP_C57BL6NJ_T0074396.1 MGP_C57BL6NJ_G0030441.1 mouse_genomes_project 5 128690770 128720596 + MGP_C57BL6NJ_P0074396 Rasal1 protein_coding protein_coding MGP_C57BL6NJ_T0074397.1 MGP_C57BL6NJ_G0030441.1 mouse_genomes_project 5 128694667 128700951 + Rasal1 protein_coding processed_transcript MGP_C57BL6NJ_T0074398.1 MGP_C57BL6NJ_G0030441.1 mouse_genomes_project 5 128720160 128720874 + Rasal1 protein_coding retained_intron MGP_C57BL6NJ_T0001610.1 MGP_C57BL6NJ_G0001509.1 mouse_genomes_project 5 22948311 22949195 + TEC TEC MGP_C57BL6NJ_T0076489.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160538348 160541126 - MGP_C57BL6NJ_P0076489 Hmgb1 protein_coding protein_coding MGP_C57BL6NJ_T0076490.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160538348 160699822 - MGP_C57BL6NJ_P0076490 Hmgb1 protein_coding protein_coding MGP_C57BL6NJ_T0076491.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160538662 160539957 - Hmgb1 protein_coding retained_intron MGP_C57BL6NJ_T0076492.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160538910 160543137 - MGP_C57BL6NJ_P0076492 Hmgb1 protein_coding protein_coding MGP_C57BL6NJ_T0076493.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160539333 160542503 - MGP_C57BL6NJ_P0076493 Hmgb1 protein_coding protein_coding MGP_C57BL6NJ_T0076494.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160539577 160543142 - Hmgb1 protein_coding retained_intron MGP_C57BL6NJ_T0076495.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160539824 160543638 - MGP_C57BL6NJ_P0076495 Hmgb1 protein_coding protein_coding MGP_C57BL6NJ_T0076496.1 MGP_C57BL6NJ_G0030836.1 mouse_genomes_project 5 160539882 160543107 - Hmgb1 protein_coding retained_intron MGP_C57BL6NJ_T0015316.1 MGP_C57BL6NJ_G0013361.1 mouse_genomes_project 5 31296563 31297191 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015396.1 MGP_C57BL6NJ_G0013441.1 mouse_genomes_project 5 66409055 66410010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070811.1 MGP_C57BL6NJ_G0029755.1 mouse_genomes_project 5 20799803 20859927 - MGP_C57BL6NJ_P0070811 Slc26a5 protein_coding protein_coding MGP_C57BL6NJ_T0070812.1 MGP_C57BL6NJ_G0029755.1 mouse_genomes_project 5 20799803 20854252 - MGP_C57BL6NJ_P0070812 Slc26a5 protein_coding protein_coding MGP_C57BL6NJ_T0070813.1 MGP_C57BL6NJ_G0029755.1 mouse_genomes_project 5 20800166 20838227 - MGP_C57BL6NJ_P0070813 Slc26a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070814.1 MGP_C57BL6NJ_G0029755.1 mouse_genomes_project 5 20800297 20838179 - MGP_C57BL6NJ_P0070814 Slc26a5 protein_coding protein_coding MGP_C57BL6NJ_T0070815.1 MGP_C57BL6NJ_G0029755.1 mouse_genomes_project 5 20806309 20811075 - Slc26a5 protein_coding retained_intron MGP_C57BL6NJ_T0075059.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137876763 137944271 - MGP_C57BL6NJ_P0075059 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075060.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137876767 137944224 - MGP_C57BL6NJ_P0075060 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075061.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137879380 138111112 - MGP_C57BL6NJ_P0075061 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075062.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137879380 138111271 - MGP_C57BL6NJ_P0075062 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075063.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137879661 138111395 - MGP_C57BL6NJ_P0075063 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075064.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137928503 138026974 - MGP_C57BL6NJ_P0075064 Rimbp2 protein_coding protein_coding MGP_C57BL6NJ_T0075065.1 MGP_C57BL6NJ_G0030551.1 mouse_genomes_project 5 137965758 138111090 - Rimbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0074405.1 MGP_C57BL6NJ_G0030443.1 mouse_genomes_project 5 128785905 128806057 - MGP_C57BL6NJ_P0074405 Oas2 protein_coding protein_coding MGP_C57BL6NJ_T0074406.1 MGP_C57BL6NJ_G0030443.1 mouse_genomes_project 5 128785906 128806057 - MGP_C57BL6NJ_P0074406 Oas2 protein_coding protein_coding MGP_C57BL6NJ_T0074407.1 MGP_C57BL6NJ_G0030443.1 mouse_genomes_project 5 128785908 128791148 - Oas2 protein_coding retained_intron MGP_C57BL6NJ_T0074408.1 MGP_C57BL6NJ_G0030443.1 mouse_genomes_project 5 128788854 128794795 - MGP_C57BL6NJ_P0074408 Oas2 protein_coding protein_coding MGP_C57BL6NJ_T0001584.1 MGP_C57BL6NJ_G0001483.1 mouse_genomes_project 5 11445613 11448113 - TEC TEC MGP_C57BL6NJ_T0074830.1 MGP_C57BL6NJ_G0030509.1 mouse_genomes_project 5 132576540 132578467 - MGP_C57BL6NJ_P0074830 Hcar2 protein_coding protein_coding MGP_C57BL6NJ_T0015245.1 MGP_C57BL6NJ_G0013290.1 mouse_genomes_project 5 6966460 6966702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071266.1 MGP_C57BL6NJ_G0029838.1 mouse_genomes_project 5 30867198 30874452 - MGP_C57BL6NJ_P0071266 Slc30a3 protein_coding protein_coding MGP_C57BL6NJ_T0071267.1 MGP_C57BL6NJ_G0029838.1 mouse_genomes_project 5 30868495 30869451 - MGP_C57BL6NJ_P0071267 Slc30a3 protein_coding protein_coding MGP_C57BL6NJ_T0071268.1 MGP_C57BL6NJ_G0029838.1 mouse_genomes_project 5 30869876 30874564 - MGP_C57BL6NJ_P0071268 Slc30a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071269.1 MGP_C57BL6NJ_G0029838.1 mouse_genomes_project 5 30870435 30875896 - MGP_C57BL6NJ_P0071269 Slc30a3 protein_coding protein_coding MGP_C57BL6NJ_T0071270.1 MGP_C57BL6NJ_G0029838.1 mouse_genomes_project 5 30870471 30895511 - MGP_C57BL6NJ_P0071270 Slc30a3 protein_coding protein_coding MGP_C57BL6NJ_T0076275.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155864985 155896484 - MGP_C57BL6NJ_P0076275 Kpna7 protein_coding protein_coding MGP_C57BL6NJ_T0076276.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155865193 155895474 - MGP_C57BL6NJ_P0076276 Kpna7 protein_coding protein_coding MGP_C57BL6NJ_T0076277.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155867156 155893649 - MGP_C57BL6NJ_P0076277 Kpna7 protein_coding protein_coding MGP_C57BL6NJ_T0076278.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155876579 155891001 - Kpna7 protein_coding processed_transcript MGP_C57BL6NJ_T0076279.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155887463 155895234 - MGP_C57BL6NJ_P0076279 Kpna7 protein_coding protein_coding MGP_C57BL6NJ_T0076280.1 MGP_C57BL6NJ_G0030785.1 mouse_genomes_project 5 155893599 155995385 - MGP_C57BL6NJ_P0076280 Kpna7 protein_coding protein_coding MGP_C57BL6NJ_T0075326.1 MGP_C57BL6NJ_G0030592.1 mouse_genomes_project 5 144276970 144297746 - MGP_C57BL6NJ_P0075326 Eif4h protein_coding protein_coding MGP_C57BL6NJ_T0075327.1 MGP_C57BL6NJ_G0030592.1 mouse_genomes_project 5 144277126 144297603 - MGP_C57BL6NJ_P0075327 Eif4h protein_coding protein_coding MGP_C57BL6NJ_T0075328.1 MGP_C57BL6NJ_G0030592.1 mouse_genomes_project 5 144281128 144297581 - Eif4h protein_coding retained_intron MGP_C57BL6NJ_T0075329.1 MGP_C57BL6NJ_G0030592.1 mouse_genomes_project 5 144282131 144297558 - Eif4h protein_coding retained_intron MGP_C57BL6NJ_T0075330.1 MGP_C57BL6NJ_G0030592.1 mouse_genomes_project 5 144295717 144297566 - Eif4h protein_coding retained_intron MGP_C57BL6NJ_T0075186.1 MGP_C57BL6NJ_G0030574.1 mouse_genomes_project 5 139485349 139499260 + MGP_C57BL6NJ_P0075186 Tmem248 protein_coding protein_coding MGP_C57BL6NJ_T0075187.1 MGP_C57BL6NJ_G0030574.1 mouse_genomes_project 5 139488012 139514889 + MGP_C57BL6NJ_P0075187 Tmem248 protein_coding protein_coding MGP_C57BL6NJ_T0075188.1 MGP_C57BL6NJ_G0030574.1 mouse_genomes_project 5 139488012 139503349 + MGP_C57BL6NJ_P0075188 Tmem248 protein_coding protein_coding MGP_C57BL6NJ_T0075189.1 MGP_C57BL6NJ_G0030574.1 mouse_genomes_project 5 139488108 139503225 + MGP_C57BL6NJ_P0075189 Tmem248 protein_coding protein_coding MGP_C57BL6NJ_T0075190.1 MGP_C57BL6NJ_G0030574.1 mouse_genomes_project 5 139490603 139514790 + MGP_C57BL6NJ_P0075190 Tmem248 protein_coding protein_coding MGP_C57BL6NJ_T0073407.1 MGP_C57BL6NJ_G0030236.1 mouse_genomes_project 5 109925755 109950531 - MGP_C57BL6NJ_P0073407 Hsd17b13 protein_coding protein_coding MGP_C57BL6NJ_T0073408.1 MGP_C57BL6NJ_G0030236.1 mouse_genomes_project 5 109935167 109950493 - MGP_C57BL6NJ_P0073408 Hsd17b13 protein_coding protein_coding MGP_C57BL6NJ_T0073409.1 MGP_C57BL6NJ_G0030236.1 mouse_genomes_project 5 109935167 109950577 - MGP_C57BL6NJ_P0073409 Hsd17b13 protein_coding protein_coding MGP_C57BL6NJ_T0008347.1 MGP_C57BL6NJ_G0006801.1 mouse_genomes_project 5 77186856 77194416 + lincRNA lincRNA MGP_C57BL6NJ_T0008348.1 MGP_C57BL6NJ_G0006801.1 mouse_genomes_project 5 77186856 77194417 + lincRNA lincRNA MGP_C57BL6NJ_T0072569.1 MGP_C57BL6NJ_G0030051.1 mouse_genomes_project 5 75969976 76001769 + MGP_C57BL6NJ_P0072569 protein_coding protein_coding MGP_C57BL6NJ_T0071111.1 MGP_C57BL6NJ_G0029812.1 mouse_genomes_project 5 29803870 29806358 - MGP_C57BL6NJ_P0071111 3110082J24Rik protein_coding protein_coding MGP_C57BL6NJ_T0071112.1 MGP_C57BL6NJ_G0029812.1 mouse_genomes_project 5 29804175 29805631 - MGP_C57BL6NJ_P0071112 3110082J24Rik protein_coding protein_coding MGP_C57BL6NJ_T0101734.1 MGP_C57BL6NJ_G0039780.1 mouse_genomes_project 5 58627310 58627438 - Gm23015 snoRNA snoRNA MGP_C57BL6NJ_T0076139.1 MGP_C57BL6NJ_G0030756.1 mouse_genomes_project 5 153985263 154000175 + MGP_C57BL6NJ_P0076139 Zfp12 protein_coding protein_coding MGP_C57BL6NJ_T0076140.1 MGP_C57BL6NJ_G0030756.1 mouse_genomes_project 5 153985274 154001061 + MGP_C57BL6NJ_P0076140 Zfp12 protein_coding protein_coding MGP_C57BL6NJ_T0076141.1 MGP_C57BL6NJ_G0030756.1 mouse_genomes_project 5 153985347 154000183 + MGP_C57BL6NJ_P0076141 Zfp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076142.1 MGP_C57BL6NJ_G0030756.1 mouse_genomes_project 5 153985879 153992307 + MGP_C57BL6NJ_P0076142 Zfp12 protein_coding protein_coding MGP_C57BL6NJ_T0076143.1 MGP_C57BL6NJ_G0030756.1 mouse_genomes_project 5 153992265 153996857 + Zfp12 protein_coding processed_transcript MGP_C57BL6NJ_T0100471.1 MGP_C57BL6NJ_G0038517.1 mouse_genomes_project 5 106252448 106252608 - Gm23173 snRNA snRNA MGP_C57BL6NJ_T0073057.1 MGP_C57BL6NJ_G0030166.1 mouse_genomes_project 5 95916244 95925078 + MGP_C57BL6NJ_P0073057 Areg protein_coding protein_coding MGP_C57BL6NJ_T0071534.1 MGP_C57BL6NJ_G0029877.1 mouse_genomes_project 5 33488249 33491492 - MGP_C57BL6NJ_P0071534 Nkx1-1 protein_coding protein_coding MGP_C57BL6NJ_T0071563.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807790 33815954 + MGP_C57BL6NJ_P0071563 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071564.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807840 33823185 + MGP_C57BL6NJ_P0071564 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071565.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807840 33823184 + MGP_C57BL6NJ_P0071565 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071566.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807840 33823185 + MGP_C57BL6NJ_P0071566 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071567.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807907 33823180 + MGP_C57BL6NJ_P0071567 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071568.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33807914 33821724 + MGP_C57BL6NJ_P0071568 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071569.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33808422 33823185 + MGP_C57BL6NJ_P0071569 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071570.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33808422 33823185 + MGP_C57BL6NJ_P0071570 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071571.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33808560 33816123 + MGP_C57BL6NJ_P0071571 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071572.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33808936 33818907 + Fgfr3 protein_coding retained_intron MGP_C57BL6NJ_T0071573.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33809888 33815967 + MGP_C57BL6NJ_P0071573 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071574.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33815854 33818860 + MGP_C57BL6NJ_P0071574 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071575.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33816080 33819400 + Fgfr3 protein_coding retained_intron MGP_C57BL6NJ_T0071576.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33816337 33819878 + MGP_C57BL6NJ_P0071576 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071577.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33819368 33820969 + MGP_C57BL6NJ_P0071577 Fgfr3 protein_coding protein_coding MGP_C57BL6NJ_T0071578.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33819808 33821030 + Fgfr3 protein_coding retained_intron MGP_C57BL6NJ_T0071579.1 MGP_C57BL6NJ_G0029883.1 mouse_genomes_project 5 33820721 33821681 + Fgfr3 protein_coding retained_intron MGP_C57BL6NJ_T0008496.1 MGP_C57BL6NJ_G0006904.1 mouse_genomes_project 5 122764915 122768967 + Gm42903 lincRNA lincRNA MGP_C57BL6NJ_T0015447.1 MGP_C57BL6NJ_G0013492.1 mouse_genomes_project 5 92689221 92689600 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074196.1 MGP_C57BL6NJ_G0030403.1 mouse_genomes_project 5 123011850 123016408 + MGP_C57BL6NJ_P0074196 Rplp0 protein_coding protein_coding MGP_C57BL6NJ_T0074197.1 MGP_C57BL6NJ_G0030403.1 mouse_genomes_project 5 123011920 123015236 + MGP_C57BL6NJ_P0074197 Rplp0 protein_coding protein_coding MGP_C57BL6NJ_T0074198.1 MGP_C57BL6NJ_G0030403.1 mouse_genomes_project 5 123011961 123013601 + MGP_C57BL6NJ_P0074198 Rplp0 protein_coding protein_coding MGP_C57BL6NJ_T0074199.1 MGP_C57BL6NJ_G0030403.1 mouse_genomes_project 5 123012006 123013458 + Rplp0 protein_coding retained_intron MGP_C57BL6NJ_T0001651.1 MGP_C57BL6NJ_G0001547.1 mouse_genomes_project 5 37162874 37163024 + TEC TEC MGP_C57BL6NJ_T0015252.1 MGP_C57BL6NJ_G0013297.1 mouse_genomes_project 5 10909506 10911066 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070483.1 MGP_C57BL6NJ_G0029696.1 mouse_genomes_project 5 984287 987863 - MGP_C57BL6NJ_P0070483 protein_coding protein_coding MGP_C57BL6NJ_T0070484.1 MGP_C57BL6NJ_G0029696.1 mouse_genomes_project 5 984290 987837 - MGP_C57BL6NJ_P0070484 protein_coding protein_coding MGP_C57BL6NJ_T0070485.1 MGP_C57BL6NJ_G0029696.1 mouse_genomes_project 5 985918 987826 - protein_coding processed_transcript MGP_C57BL6NJ_T0008389.1 MGP_C57BL6NJ_G0006837.1 mouse_genomes_project 5 102364117 102382493 + Gm8013 lincRNA lincRNA MGP_C57BL6NJ_T0015427.1 MGP_C57BL6NJ_G0013472.1 mouse_genomes_project 5 81342420 81342757 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005008.1 MGP_C57BL6NJ_G0004304.1 mouse_genomes_project 5 141297736 141301236 + 4930563F08Rik antisense antisense MGP_C57BL6NJ_T0001663.1 MGP_C57BL6NJ_G0001559.1 mouse_genomes_project 5 44430322 44431685 - TEC TEC MGP_C57BL6NJ_T0101767.1 MGP_C57BL6NJ_G0039813.1 mouse_genomes_project 5 155638339 155638468 + Gm23995 snoRNA snoRNA MGP_C57BL6NJ_T0073666.1 MGP_C57BL6NJ_G0030293.1 mouse_genomes_project 5 115322457 115328533 - MGP_C57BL6NJ_P0073666 Slc26a1 protein_coding protein_coding MGP_C57BL6NJ_T0073667.1 MGP_C57BL6NJ_G0030293.1 mouse_genomes_project 5 115323113 115327717 - MGP_C57BL6NJ_P0073667 Slc26a1 protein_coding protein_coding MGP_C57BL6NJ_T0073668.1 MGP_C57BL6NJ_G0030293.1 mouse_genomes_project 5 115323129 115327717 - MGP_C57BL6NJ_P0073668 Slc26a1 protein_coding protein_coding MGP_C57BL6NJ_T0073669.1 MGP_C57BL6NJ_G0030293.1 mouse_genomes_project 5 115324662 115327749 - MGP_C57BL6NJ_P0073669 Slc26a1 protein_coding protein_coding MGP_C57BL6NJ_T0071196.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622622 30625136 + MGP_C57BL6NJ_P0071196 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071197.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622780 30630616 + MGP_C57BL6NJ_P0071197 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071198.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622863 30643546 + MGP_C57BL6NJ_P0071198 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071199.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622869 30627762 + Agbl5 protein_coding retained_intron MGP_C57BL6NJ_T0071200.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622884 30643248 + Agbl5 protein_coding retained_intron MGP_C57BL6NJ_T0071201.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622897 30630013 + Agbl5 protein_coding retained_intron MGP_C57BL6NJ_T0071202.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622897 30643247 + MGP_C57BL6NJ_P0071202 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071203.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622902 30640068 + MGP_C57BL6NJ_P0071203 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071204.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622929 30643247 + MGP_C57BL6NJ_P0071204 Agbl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071205.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622934 30640068 + MGP_C57BL6NJ_P0071205 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071206.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30622934 30643247 + MGP_C57BL6NJ_P0071206 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071207.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30623254 30625798 + MGP_C57BL6NJ_P0071207 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0071208.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30624210 30626376 + Agbl5 protein_coding processed_transcript MGP_C57BL6NJ_T0071209.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30628132 30630023 + Agbl5 protein_coding retained_intron MGP_C57BL6NJ_T0071211.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30629067 30630044 + Agbl5 protein_coding retained_intron MGP_C57BL6NJ_T0071212.1 MGP_C57BL6NJ_G0029828.1 mouse_genomes_project 5 30629861 30642491 + MGP_C57BL6NJ_P0071212 Agbl5 protein_coding protein_coding MGP_C57BL6NJ_T0008377.1 MGP_C57BL6NJ_G0006825.1 mouse_genomes_project 5 93454433 93473593 + Gm42912 lincRNA lincRNA MGP_C57BL6NJ_T0072700.1 MGP_C57BL6NJ_G0030075.1 mouse_genomes_project 5 79568177 79598718 - MGP_C57BL6NJ_P0072700 Nmu protein_coding protein_coding MGP_C57BL6NJ_T0100474.1 MGP_C57BL6NJ_G0038520.1 mouse_genomes_project 5 111093566 111093673 + Gm24097 snRNA snRNA MGP_C57BL6NJ_T0070778.1 MGP_C57BL6NJ_G0029747.1 mouse_genomes_project 5 20376488 20441220 + MGP_C57BL6NJ_P0070778 Fam185a protein_coding protein_coding MGP_C57BL6NJ_T0070779.1 MGP_C57BL6NJ_G0029747.1 mouse_genomes_project 5 20376531 20389627 + Fam185a protein_coding retained_intron MGP_C57BL6NJ_T0070780.1 MGP_C57BL6NJ_G0029747.1 mouse_genomes_project 5 20389761 20439900 + Fam185a protein_coding processed_transcript MGP_C57BL6NJ_T0008255.1 MGP_C57BL6NJ_G0006732.1 mouse_genomes_project 5 28007056 28021423 + Gm26894 lincRNA lincRNA MGP_C57BL6NJ_T0072614.1 MGP_C57BL6NJ_G0030059.1 mouse_genomes_project 5 76681877 76696974 - MGP_C57BL6NJ_P0072614 Sgcb protein_coding protein_coding MGP_C57BL6NJ_T0072615.1 MGP_C57BL6NJ_G0030059.1 mouse_genomes_project 5 76693189 76693652 - Sgcb protein_coding retained_intron MGP_C57BL6NJ_T0102283.1 MGP_C57BL6NJ_G0040264.1 mouse_genomes_project 5 147631464 147631957 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0004818.1 MGP_C57BL6NJ_G0004167.1 mouse_genomes_project 5 31336239 31337559 - 4930566F21Rik antisense antisense MGP_C57BL6NJ_T0004819.1 MGP_C57BL6NJ_G0004167.1 mouse_genomes_project 5 31336243 31344790 - 4930566F21Rik antisense antisense MGP_C57BL6NJ_T0070522.1 MGP_C57BL6NJ_G0029702.1 mouse_genomes_project 5 2723263 2765812 - MGP_C57BL6NJ_P0070522 1700015F17Rik protein_coding protein_coding MGP_C57BL6NJ_T0070523.1 MGP_C57BL6NJ_G0029702.1 mouse_genomes_project 5 2723263 2750277 - MGP_C57BL6NJ_P0070523 1700015F17Rik protein_coding protein_coding MGP_C57BL6NJ_T0070524.1 MGP_C57BL6NJ_G0029702.1 mouse_genomes_project 5 2723268 2765749 - MGP_C57BL6NJ_P0070524 1700015F17Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075664.1 MGP_C57BL6NJ_G0030657.1 mouse_genomes_project 5 147505630 147508427 - MGP_C57BL6NJ_P0075664 Epo protein_coding protein_coding MGP_C57BL6NJ_T0075665.1 MGP_C57BL6NJ_G0030657.1 mouse_genomes_project 5 147505630 147558821 - MGP_C57BL6NJ_P0075665 Epo protein_coding protein_coding MGP_C57BL6NJ_T0075666.1 MGP_C57BL6NJ_G0030657.1 mouse_genomes_project 5 147505636 147508427 - MGP_C57BL6NJ_P0075666 Epo protein_coding protein_coding MGP_C57BL6NJ_T0074167.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122864621 122885566 + Msi1 protein_coding retained_intron MGP_C57BL6NJ_T0074168.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122864670 122893624 + MGP_C57BL6NJ_P0074168 Msi1 protein_coding protein_coding MGP_C57BL6NJ_T0074169.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122865394 122888972 + MGP_C57BL6NJ_P0074169 Msi1 protein_coding protein_coding MGP_C57BL6NJ_T0074170.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122868181 122870420 + Msi1 protein_coding retained_intron MGP_C57BL6NJ_T0074171.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122868530 122888965 + Msi1 protein_coding retained_intron MGP_C57BL6NJ_T0074172.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122869079 122882061 + Msi1 protein_coding retained_intron MGP_C57BL6NJ_T0074173.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122869775 122888949 + MGP_C57BL6NJ_P0074173 Msi1 protein_coding protein_coding MGP_C57BL6NJ_T0074174.1 MGP_C57BL6NJ_G0030399.1 mouse_genomes_project 5 122870266 122882283 + Msi1 protein_coding retained_intron MGP_C57BL6NJ_T0015258.1 MGP_C57BL6NJ_G0013303.1 mouse_genomes_project 5 14493924 14494168 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015355.1 MGP_C57BL6NJ_G0013400.1 mouse_genomes_project 5 49582700 49584065 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072942.1 MGP_C57BL6NJ_G0030129.1 mouse_genomes_project 5 92603690 92605796 + MGP_C57BL6NJ_P0072942 Cabs1 protein_coding protein_coding MGP_C57BL6NJ_T0073693.1 MGP_C57BL6NJ_G0030306.1 mouse_genomes_project 5 116980622 116984418 + MGP_C57BL6NJ_P0073693 Plcxd1 protein_coding protein_coding MGP_C57BL6NJ_T0073694.1 MGP_C57BL6NJ_G0030306.1 mouse_genomes_project 5 116981075 116982533 + MGP_C57BL6NJ_P0073694 Plcxd1 protein_coding protein_coding MGP_C57BL6NJ_T0073695.1 MGP_C57BL6NJ_G0030306.1 mouse_genomes_project 5 116981212 116986551 + MGP_C57BL6NJ_P0073695 Plcxd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073696.1 MGP_C57BL6NJ_G0030306.1 mouse_genomes_project 5 116981857 116986556 + Plcxd1 protein_coding processed_transcript MGP_C57BL6NJ_T0001948.1 MGP_C57BL6NJ_G0001841.1 mouse_genomes_project 5 130980712 130985383 + TEC TEC MGP_C57BL6NJ_T0103187.1 MGP_C57BL6NJ_G0040981.1 mouse_genomes_project 5 166842 168157 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099454.1 MGP_C57BL6NJ_G0037511.1 mouse_genomes_project 5 616758 617510 + Gm43017 sense_intronic sense_intronic MGP_C57BL6NJ_T0098882.1 MGP_C57BL6NJ_G0036946.1 mouse_genomes_project 5 145723191 145724990 + pseudogene pseudogene MGP_C57BL6NJ_T0073907.1 MGP_C57BL6NJ_G0030345.1 mouse_genomes_project 5 120380007 120392354 + MGP_C57BL6NJ_P0073907 Tmem211 protein_coding protein_coding MGP_C57BL6NJ_T0001723.1 MGP_C57BL6NJ_G0001618.1 mouse_genomes_project 5 52558240 52560060 - TEC TEC MGP_C57BL6NJ_T0070627.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6305691 6372838 + MGP_C57BL6NJ_P0070627 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070628.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6305697 6332861 + MGP_C57BL6NJ_P0070628 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070629.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6305730 6390854 + MGP_C57BL6NJ_P0070629 protein_coding protein_coding MGP_C57BL6NJ_T0070630.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6344807 6347277 + protein_coding retained_intron MGP_C57BL6NJ_T0070631.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6372349 6372838 + protein_coding retained_intron MGP_C57BL6NJ_T0070632.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6374389 6376788 + protein_coding retained_intron MGP_C57BL6NJ_T0070633.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6374594 6390474 + MGP_C57BL6NJ_P0070633 protein_coding protein_coding MGP_C57BL6NJ_T0070634.1 MGP_C57BL6NJ_G0029717.1 mouse_genomes_project 5 6374862 6377888 + protein_coding retained_intron MGP_C57BL6NJ_T0103207.1 MGP_C57BL6NJ_G0041001.1 mouse_genomes_project 5 98400186 98401260 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101727.1 MGP_C57BL6NJ_G0039773.1 mouse_genomes_project 5 23021906 23021977 + Snord93 snoRNA snoRNA MGP_C57BL6NJ_T0015363.1 MGP_C57BL6NJ_G0013408.1 mouse_genomes_project 5 55344859 55345937 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015546.1 MGP_C57BL6NJ_G0013591.1 mouse_genomes_project 5 131636168 131636626 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018589.1 MGP_C57BL6NJ_G0015984.1 mouse_genomes_project 5 30266281 30282157 - Gm9899 processed_transcript lincRNA MGP_C57BL6NJ_T0018590.1 MGP_C57BL6NJ_G0015984.1 mouse_genomes_project 5 30269761 30270320 - Gm9899 processed_transcript pseudogene MGP_C57BL6NJ_T0018591.1 MGP_C57BL6NJ_G0015984.1 mouse_genomes_project 5 30270243 30272150 - Gm9899 processed_transcript retained_intron MGP_C57BL6NJ_T0001850.1 MGP_C57BL6NJ_G0001743.1 mouse_genomes_project 5 96806528 96811154 - TEC TEC MGP_C57BL6NJ_T0074370.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128530525 128556089 + MGP_C57BL6NJ_P0074370 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074371.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128530592 128556084 + MGP_C57BL6NJ_P0074371 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074372.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128530609 128556085 + MGP_C57BL6NJ_P0074372 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074373.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128530627 128532545 + MGP_C57BL6NJ_P0074373 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074374.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128532224 128540525 + MGP_C57BL6NJ_P0074374 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074375.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128532499 128555122 + MGP_C57BL6NJ_P0074375 Slc8b1 protein_coding protein_coding MGP_C57BL6NJ_T0074376.1 MGP_C57BL6NJ_G0030435.1 mouse_genomes_project 5 128541552 128542994 + Slc8b1 protein_coding retained_intron MGP_C57BL6NJ_T0001631.1 MGP_C57BL6NJ_G0001528.1 mouse_genomes_project 5 31558435 31558667 + TEC TEC MGP_C57BL6NJ_T0008461.1 MGP_C57BL6NJ_G0006886.1 mouse_genomes_project 5 118570017 118576541 + C130026L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008462.1 MGP_C57BL6NJ_G0006886.1 mouse_genomes_project 5 118570156 118575749 + C130026L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008463.1 MGP_C57BL6NJ_G0006886.1 mouse_genomes_project 5 118570163 118571469 + C130026L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008464.1 MGP_C57BL6NJ_G0006886.1 mouse_genomes_project 5 118571026 118602462 + C130026L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008443.1 MGP_C57BL6NJ_G0006876.1 mouse_genomes_project 5 114969649 114973348 + Gm43082 lincRNA lincRNA MGP_C57BL6NJ_T0101737.1 MGP_C57BL6NJ_G0039783.1 mouse_genomes_project 5 64257314 64257446 - Gm22273 snoRNA snoRNA MGP_C57BL6NJ_T0004909.1 MGP_C57BL6NJ_G0004237.1 mouse_genomes_project 5 105784449 105801799 + Tmem150cos antisense antisense MGP_C57BL6NJ_T0004910.1 MGP_C57BL6NJ_G0004237.1 mouse_genomes_project 5 105798546 105801923 + Tmem150cos antisense antisense MGP_C57BL6NJ_T0073202.1 MGP_C57BL6NJ_G0030195.1 mouse_genomes_project 5 101586947 101645736 + MGP_C57BL6NJ_P0073202 Mrpl1 protein_coding protein_coding MGP_C57BL6NJ_T0073203.1 MGP_C57BL6NJ_G0030195.1 mouse_genomes_project 5 101587569 101645718 + MGP_C57BL6NJ_P0073203 Mrpl1 protein_coding protein_coding MGP_C57BL6NJ_T0073204.1 MGP_C57BL6NJ_G0030195.1 mouse_genomes_project 5 101587598 101618673 + MGP_C57BL6NJ_P0073204 Mrpl1 protein_coding protein_coding MGP_C57BL6NJ_T0071980.1 MGP_C57BL6NJ_G0029950.1 mouse_genomes_project 5 42405931 42467307 - MGP_C57BL6NJ_P0071980 Bod1l protein_coding protein_coding MGP_C57BL6NJ_T0071981.1 MGP_C57BL6NJ_G0029950.1 mouse_genomes_project 5 42405931 42467307 - MGP_C57BL6NJ_P0071981 Bod1l protein_coding protein_coding MGP_C57BL6NJ_T0071982.1 MGP_C57BL6NJ_G0029950.1 mouse_genomes_project 5 42443174 42445594 - Bod1l protein_coding processed_transcript MGP_C57BL6NJ_T0071983.1 MGP_C57BL6NJ_G0029950.1 mouse_genomes_project 5 42444066 42467284 - Bod1l protein_coding retained_intron MGP_C57BL6NJ_T0074903.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133146656 133214144 - MGP_C57BL6NJ_P0074903 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074904.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133146662 133212424 - MGP_C57BL6NJ_P0074904 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074905.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133152480 133201325 - MGP_C57BL6NJ_P0074905 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074906.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133155393 133166091 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074907.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133169285 133170247 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074908.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133174644 133175296 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074909.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133175292 133176804 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074910.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133177337 133212407 - MGP_C57BL6NJ_P0074910 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074911.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133177353 133180645 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074912.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133177355 133214231 - MGP_C57BL6NJ_P0074912 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074913.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133180310 133181501 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0074914.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133180310 133214187 - MGP_C57BL6NJ_P0074914 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074915.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133182985 133212406 - MGP_C57BL6NJ_P0074915 Sbno1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074916.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133184358 133191082 - MGP_C57BL6NJ_P0074916 Sbno1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074917.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133192449 133212398 - MGP_C57BL6NJ_P0074917 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074918.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133196907 133212382 - MGP_C57BL6NJ_P0074918 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074919.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133197139 133206689 - MGP_C57BL6NJ_P0074919 Sbno1 protein_coding protein_coding MGP_C57BL6NJ_T0074920.1 MGP_C57BL6NJ_G0030523.1 mouse_genomes_project 5 133210324 133212356 - Sbno1 protein_coding retained_intron MGP_C57BL6NJ_T0071049.1 MGP_C57BL6NJ_G0029799.1 mouse_genomes_project 5 27678350 27686500 + MGP_C57BL6NJ_P0071049 En2 protein_coding protein_coding MGP_C57BL6NJ_T0072599.1 MGP_C57BL6NJ_G0030055.1 mouse_genomes_project 5 76330160 76346637 - MGP_C57BL6NJ_P0072599 Ociad2 protein_coding protein_coding MGP_C57BL6NJ_T0072600.1 MGP_C57BL6NJ_G0030055.1 mouse_genomes_project 5 76335614 76349070 - MGP_C57BL6NJ_P0072600 Ociad2 protein_coding protein_coding MGP_C57BL6NJ_T0001577.1 MGP_C57BL6NJ_G0001476.1 mouse_genomes_project 5 6350664 6350965 + TEC TEC MGP_C57BL6NJ_T0102268.1 MGP_C57BL6NJ_G0040255.1 mouse_genomes_project 5 75555244 75556467 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001689.1 MGP_C57BL6NJ_G0001585.1 mouse_genomes_project 5 48985037 48987634 + TEC TEC MGP_C57BL6NJ_T0004802.1 MGP_C57BL6NJ_G0004154.1 mouse_genomes_project 5 20906650 20954863 + Gm10475 antisense antisense MGP_C57BL6NJ_T0008568.1 MGP_C57BL6NJ_G0006952.1 mouse_genomes_project 5 136157140 136172665 + 4930572K03Rik lincRNA lincRNA MGP_C57BL6NJ_T0008569.1 MGP_C57BL6NJ_G0006952.1 mouse_genomes_project 5 136157145 136172679 + 4930572K03Rik lincRNA lincRNA MGP_C57BL6NJ_T0015600.1 MGP_C57BL6NJ_G0013645.1 mouse_genomes_project 5 157063048 157063864 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008431.1 MGP_C57BL6NJ_G0006865.1 mouse_genomes_project 5 112524303 112534783 + Gm32736 lincRNA lincRNA MGP_C57BL6NJ_T0004989.1 MGP_C57BL6NJ_G0004291.1 mouse_genomes_project 5 132046098 132050407 - Gm15747 antisense antisense MGP_C57BL6NJ_T0004990.1 MGP_C57BL6NJ_G0004291.1 mouse_genomes_project 5 132046109 132047514 - Gm15747 antisense antisense MGP_C57BL6NJ_T0072638.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645202 77715459 + MGP_C57BL6NJ_P0072638 Fip1l1 protein_coding protein_coding MGP_C57BL6NJ_T0072639.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645224 77715469 + MGP_C57BL6NJ_P0072639 Fip1l1 protein_coding protein_coding MGP_C57BL6NJ_T0072640.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645232 77709099 + MGP_C57BL6NJ_P0072640 Fip1l1 protein_coding protein_coding MGP_C57BL6NJ_T0072641.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645234 77712814 + MGP_C57BL6NJ_P0072641 Fip1l1 protein_coding protein_coding MGP_C57BL6NJ_T0072642.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645237 77650320 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072643.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645256 77708481 + MGP_C57BL6NJ_P0072643 Fip1l1 protein_coding protein_coding MGP_C57BL6NJ_T0072644.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645437 77702100 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072645.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77645732 77656790 + Fip1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0072646.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77701405 77708581 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072647.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77701450 77704892 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072648.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77702797 77705087 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072649.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77703471 77708671 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0072654.1 MGP_C57BL6NJ_G0030064.1 mouse_genomes_project 5 77711388 77712599 + Fip1l1 protein_coding retained_intron MGP_C57BL6NJ_T0001777.1 MGP_C57BL6NJ_G0001671.1 mouse_genomes_project 5 68038522 68041239 - TEC TEC MGP_C57BL6NJ_T0005033.1 MGP_C57BL6NJ_G0004322.1 mouse_genomes_project 5 149251620 149258685 + 6330403L08Rik antisense antisense MGP_C57BL6NJ_T0005034.1 MGP_C57BL6NJ_G0004322.1 mouse_genomes_project 5 149251620 149258684 + 6330403L08Rik antisense antisense MGP_C57BL6NJ_T0074117.1 MGP_C57BL6NJ_G0030387.1 mouse_genomes_project 5 122493721 122502714 - Acads protein_coding retained_intron MGP_C57BL6NJ_T0074118.1 MGP_C57BL6NJ_G0030387.1 mouse_genomes_project 5 122493721 122502773 - MGP_C57BL6NJ_P0074118 Acads protein_coding protein_coding MGP_C57BL6NJ_T0074119.1 MGP_C57BL6NJ_G0030387.1 mouse_genomes_project 5 122495418 122502737 - Acads protein_coding processed_transcript MGP_C57BL6NJ_T0074120.1 MGP_C57BL6NJ_G0030387.1 mouse_genomes_project 5 122496206 122502702 - Acads protein_coding retained_intron MGP_C57BL6NJ_T0010976.1 MGP_C57BL6NJ_G0009061.1 mouse_genomes_project 5 145960664 145960746 + Mir7035 miRNA miRNA MGP_C57BL6NJ_T0076534.1 MGP_C57BL6NJ_G0030843.1 mouse_genomes_project 5 161233705 161332232 + MGP_C57BL6NJ_P0076534 B3glct protein_coding protein_coding MGP_C57BL6NJ_T0076535.1 MGP_C57BL6NJ_G0030843.1 mouse_genomes_project 5 161307374 161320780 + B3glct protein_coding processed_transcript MGP_C57BL6NJ_T0076536.1 MGP_C57BL6NJ_G0030843.1 mouse_genomes_project 5 161323537 161330240 + B3glct protein_coding retained_intron MGP_C57BL6NJ_T0015577.1 MGP_C57BL6NJ_G0013622.1 mouse_genomes_project 5 150050424 150050800 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015260.1 MGP_C57BL6NJ_G0013305.1 mouse_genomes_project 5 15132730 15133749 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101722.1 MGP_C57BL6NJ_G0039768.1 mouse_genomes_project 5 5719196 5719340 + Gm23993 snoRNA snoRNA MGP_C57BL6NJ_T0008422.1 MGP_C57BL6NJ_G0006861.1 mouse_genomes_project 5 110250924 110258314 - Gm42792 lincRNA lincRNA MGP_C57BL6NJ_T0076178.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326599 154344152 + MGP_C57BL6NJ_P0076178 protein_coding protein_coding MGP_C57BL6NJ_T0076179.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326599 154344152 + MGP_C57BL6NJ_P0076179 protein_coding protein_coding MGP_C57BL6NJ_T0076180.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326601 154344158 + MGP_C57BL6NJ_P0076180 protein_coding protein_coding MGP_C57BL6NJ_T0076181.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326601 154344158 + MGP_C57BL6NJ_P0076181 protein_coding protein_coding MGP_C57BL6NJ_T0076182.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326639 154329832 + MGP_C57BL6NJ_P0076182 protein_coding protein_coding MGP_C57BL6NJ_T0076183.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326654 154344154 + MGP_C57BL6NJ_P0076183 protein_coding protein_coding MGP_C57BL6NJ_T0076184.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326654 154344152 + MGP_C57BL6NJ_P0076184 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076185.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326655 154328769 + protein_coding retained_intron MGP_C57BL6NJ_T0076186.1 MGP_C57BL6NJ_G0030765.1 mouse_genomes_project 5 154326933 154329827 + protein_coding processed_transcript MGP_C57BL6NJ_T0004998.1 MGP_C57BL6NJ_G0004296.1 mouse_genomes_project 5 133602644 133603156 - Gm43777 antisense antisense MGP_C57BL6NJ_T0008611.1 MGP_C57BL6NJ_G0006983.1 mouse_genomes_project 5 154087818 154088609 + Gm43397 lincRNA lincRNA MGP_C57BL6NJ_T0073035.1 MGP_C57BL6NJ_G0030156.1 mouse_genomes_project 5 95522296 95524527 + Cxcl5 protein_coding retained_intron MGP_C57BL6NJ_T0073036.1 MGP_C57BL6NJ_G0030156.1 mouse_genomes_project 5 95522314 95524527 + MGP_C57BL6NJ_P0073036 Cxcl5 protein_coding protein_coding MGP_C57BL6NJ_T0072526.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75440707 75480155 - MGP_C57BL6NJ_P0072526 protein_coding protein_coding MGP_C57BL6NJ_T0072527.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75440710 75480116 - MGP_C57BL6NJ_P0072527 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072528.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75440921 75444041 - protein_coding retained_intron MGP_C57BL6NJ_T0072529.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75443546 75448915 - protein_coding retained_intron MGP_C57BL6NJ_T0072530.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75448455 75451260 - protein_coding retained_intron MGP_C57BL6NJ_T0072531.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75466781 75480070 - MGP_C57BL6NJ_P0072531 protein_coding protein_coding MGP_C57BL6NJ_T0072532.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75470699 75479883 - protein_coding retained_intron MGP_C57BL6NJ_T0072533.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75470701 75480119 - protein_coding retained_intron MGP_C57BL6NJ_T0072534.1 MGP_C57BL6NJ_G0030043.1 mouse_genomes_project 5 75475929 75480094 - protein_coding retained_intron MGP_C57BL6NJ_T0008607.1 MGP_C57BL6NJ_G0006980.1 mouse_genomes_project 5 153895798 153896771 - Rbakdn lincRNA lincRNA MGP_C57BL6NJ_T0008608.1 MGP_C57BL6NJ_G0006980.1 mouse_genomes_project 5 153895798 153896723 - Rbakdn lincRNA lincRNA MGP_C57BL6NJ_T0008313.1 MGP_C57BL6NJ_G0006774.1 mouse_genomes_project 5 53449737 53450012 - Gm43179 lincRNA lincRNA MGP_C57BL6NJ_T0008214.1 MGP_C57BL6NJ_G0006707.1 mouse_genomes_project 5 3761240 3775569 + Gm43325 lincRNA lincRNA MGP_C57BL6NJ_T0100428.1 MGP_C57BL6NJ_G0038474.1 mouse_genomes_project 5 23005360 23005515 - Gm22054 snRNA snRNA MGP_C57BL6NJ_T0001775.1 MGP_C57BL6NJ_G0001669.1 mouse_genomes_project 5 67974634 67978360 + TEC TEC MGP_C57BL6NJ_T0071555.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733011 33755398 + MGP_C57BL6NJ_P0071555 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071556.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733011 33762192 + MGP_C57BL6NJ_P0071556 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071557.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733030 33741651 + MGP_C57BL6NJ_P0071557 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071558.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733437 33741305 + MGP_C57BL6NJ_P0071558 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071559.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733469 33755395 + MGP_C57BL6NJ_P0071559 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071560.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33733517 33738366 + Tacc3 protein_coding retained_intron MGP_C57BL6NJ_T0071561.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33745330 33755398 + MGP_C57BL6NJ_P0071561 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0071562.1 MGP_C57BL6NJ_G0029882.1 mouse_genomes_project 5 33745393 33762182 + MGP_C57BL6NJ_P0071562 Tacc3 protein_coding protein_coding MGP_C57BL6NJ_T0015523.1 MGP_C57BL6NJ_G0013568.1 mouse_genomes_project 5 120964322 120964568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075362.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144737571 144771833 + MGP_C57BL6NJ_P0075362 Stx1a protein_coding protein_coding MGP_C57BL6NJ_T0075363.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144737596 144766682 + MGP_C57BL6NJ_P0075363 Stx1a protein_coding protein_coding MGP_C57BL6NJ_T0075364.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144737649 144771833 + MGP_C57BL6NJ_P0075364 Stx1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075365.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144755488 144769865 + Stx1a protein_coding processed_transcript MGP_C57BL6NJ_T0075366.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144759037 144771832 + Stx1a protein_coding retained_intron MGP_C57BL6NJ_T0075367.1 MGP_C57BL6NJ_G0030601.1 mouse_genomes_project 5 144759243 144769974 + Stx1a protein_coding processed_transcript MGP_C57BL6NJ_T0100466.1 MGP_C57BL6NJ_G0038512.1 mouse_genomes_project 5 97193441 97193560 + Gm23031 snRNA snRNA MGP_C57BL6NJ_T0002026.1 MGP_C57BL6NJ_G0001917.1 mouse_genomes_project 5 148850566 148852036 + TEC TEC MGP_C57BL6NJ_T0001797.1 MGP_C57BL6NJ_G0001691.1 mouse_genomes_project 5 69425061 69427764 + TEC TEC MGP_C57BL6NJ_T0015319.1 MGP_C57BL6NJ_G0013364.1 mouse_genomes_project 5 32304273 32305113 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099491.1 MGP_C57BL6NJ_G0037544.1 mouse_genomes_project 5 161619604 161619869 + Gm42558 sense_intronic sense_intronic MGP_C57BL6NJ_T0008288.1 MGP_C57BL6NJ_G0006752.1 mouse_genomes_project 5 38695868 38700619 + 4930487D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0001716.1 MGP_C57BL6NJ_G0001611.1 mouse_genomes_project 5 50160586 50163072 - TEC TEC MGP_C57BL6NJ_T0015237.1 MGP_C57BL6NJ_G0013282.1 mouse_genomes_project 5 4115994 4116560 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008442.1 MGP_C57BL6NJ_G0006875.1 mouse_genomes_project 5 114233031 114238300 - 4930428O21Rik lincRNA lincRNA MGP_C57BL6NJ_T0071712.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34898689 34965225 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0071713.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34898710 34956998 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0071714.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34898856 35062639 + MGP_C57BL6NJ_P0071714 Htt protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071715.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34938132 34940746 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0071716.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34949069 34954135 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0071717.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 34952350 34954621 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0071718.1 MGP_C57BL6NJ_G0029902.1 mouse_genomes_project 5 35016666 35024453 + Htt protein_coding retained_intron MGP_C57BL6NJ_T0072051.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46226071 46242978 - MGP_C57BL6NJ_P0072051 Qdpr protein_coding protein_coding MGP_C57BL6NJ_T0072052.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46226088 46243148 - MGP_C57BL6NJ_P0072052 Qdpr protein_coding protein_coding MGP_C57BL6NJ_T0072053.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46226188 46235638 - Qdpr protein_coding retained_intron MGP_C57BL6NJ_T0072054.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46226543 46237416 - Qdpr protein_coding processed_transcript MGP_C57BL6NJ_T0072055.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46231384 46243011 - MGP_C57BL6NJ_P0072055 Qdpr protein_coding protein_coding MGP_C57BL6NJ_T0072056.1 MGP_C57BL6NJ_G0029962.1 mouse_genomes_project 5 46235546 46242995 - MGP_C57BL6NJ_P0072056 Qdpr protein_coding protein_coding MGP_C57BL6NJ_T0015568.1 MGP_C57BL6NJ_G0013613.1 mouse_genomes_project 5 147998215 147998423 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074055.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122028386 122081344 - MGP_C57BL6NJ_P0074055 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074056.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122028387 122081341 - MGP_C57BL6NJ_P0074056 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074057.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122028390 122081341 - MGP_C57BL6NJ_P0074057 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074058.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122028390 122046447 - MGP_C57BL6NJ_P0074058 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074059.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122028390 122081283 - MGP_C57BL6NJ_P0074059 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074060.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122030554 122081311 - MGP_C57BL6NJ_P0074060 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074061.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122030849 122081344 - MGP_C57BL6NJ_P0074061 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074062.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122034195 122035146 - Git2 protein_coding processed_transcript MGP_C57BL6NJ_T0074063.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122034843 122050816 - MGP_C57BL6NJ_P0074063 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074064.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122039230 122043941 - Git2 protein_coding retained_intron MGP_C57BL6NJ_T0074065.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122049865 122081344 - Git2 protein_coding retained_intron MGP_C57BL6NJ_T0074066.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122050753 122072070 - MGP_C57BL6NJ_P0074066 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074067.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122059107 122067238 - Git2 protein_coding retained_intron MGP_C57BL6NJ_T0074068.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122069897 122083366 - MGP_C57BL6NJ_P0074068 Git2 protein_coding protein_coding MGP_C57BL6NJ_T0074069.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122070001 122081344 - Git2 protein_coding processed_transcript MGP_C57BL6NJ_T0074070.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122070088 122075002 - Git2 protein_coding processed_transcript MGP_C57BL6NJ_T0074071.1 MGP_C57BL6NJ_G0030374.1 mouse_genomes_project 5 122071221 122081316 - Git2 protein_coding retained_intron MGP_C57BL6NJ_T0076054.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151232301 151236519 + Amz1 protein_coding processed_transcript MGP_C57BL6NJ_T0076055.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151232301 151271629 + MGP_C57BL6NJ_P0076055 Amz1 protein_coding protein_coding MGP_C57BL6NJ_T0076056.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151232312 151232972 + Amz1 protein_coding processed_transcript MGP_C57BL6NJ_T0076057.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151245650 151273010 + MGP_C57BL6NJ_P0076057 Amz1 protein_coding protein_coding MGP_C57BL6NJ_T0076058.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151245691 151251399 + Amz1 protein_coding processed_transcript MGP_C57BL6NJ_T0076059.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151254568 151260402 + Amz1 protein_coding retained_intron MGP_C57BL6NJ_T0076060.1 MGP_C57BL6NJ_G0030737.1 mouse_genomes_project 5 151265998 151279758 + MGP_C57BL6NJ_P0076060 Amz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071327.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30993426 30997573 - MGP_C57BL6NJ_P0071327 Zfp513 protein_coding protein_coding MGP_C57BL6NJ_T0071328.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30993428 30997312 - MGP_C57BL6NJ_P0071328 Zfp513 protein_coding protein_coding MGP_C57BL6NJ_T0071329.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30993945 30996031 - Zfp513 protein_coding processed_transcript MGP_C57BL6NJ_T0071330.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30994226 30995556 - MGP_C57BL6NJ_P0071330 Zfp513 protein_coding protein_coding MGP_C57BL6NJ_T0071331.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30994326 30996032 - Zfp513 protein_coding processed_transcript MGP_C57BL6NJ_T0071332.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30994434 30996032 - Zfp513 protein_coding processed_transcript MGP_C57BL6NJ_T0071333.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30995938 30997485 - MGP_C57BL6NJ_P0071333 Zfp513 protein_coding protein_coding MGP_C57BL6NJ_T0071334.1 MGP_C57BL6NJ_G0029847.1 mouse_genomes_project 5 30996025 30997495 - MGP_C57BL6NJ_P0071334 Zfp513 protein_coding protein_coding MGP_C57BL6NJ_T0015471.1 MGP_C57BL6NJ_G0013516.1 mouse_genomes_project 5 103666464 103667460 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100495.1 MGP_C57BL6NJ_G0038541.1 mouse_genomes_project 5 145951522 145951694 - Gm22214 snRNA snRNA MGP_C57BL6NJ_T0070777.1 MGP_C57BL6NJ_G0029746.1 mouse_genomes_project 5 20318106 20326720 + MGP_C57BL6NJ_P0070777 Fgl2 protein_coding protein_coding MGP_C57BL6NJ_T0002037.1 MGP_C57BL6NJ_G0001928.1 mouse_genomes_project 5 154302016 154303105 + TEC TEC MGP_C57BL6NJ_T0070643.1 MGP_C57BL6NJ_G0029720.1 mouse_genomes_project 5 6660564 6720472 + MGP_C57BL6NJ_P0070643 Tmem243 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070644.1 MGP_C57BL6NJ_G0029720.1 mouse_genomes_project 5 6661214 6681194 + MGP_C57BL6NJ_P0070644 Tmem243 protein_coding protein_coding MGP_C57BL6NJ_T0070662.1 MGP_C57BL6NJ_G0029720.1 mouse_genomes_project 5 6718124 6723367 + Tmem243 protein_coding processed_transcript MGP_C57BL6NJ_T0008635.1 MGP_C57BL6NJ_G0007004.1 mouse_genomes_project 5 160477922 160483090 - 5930430L01Rik lincRNA lincRNA MGP_C57BL6NJ_T0008636.1 MGP_C57BL6NJ_G0007004.1 mouse_genomes_project 5 160478948 160483082 - 5930430L01Rik lincRNA lincRNA MGP_C57BL6NJ_T0099479.1 MGP_C57BL6NJ_G0037536.1 mouse_genomes_project 5 138968313 138969653 + Gm15903 sense_intronic sense_intronic MGP_C57BL6NJ_T0099480.1 MGP_C57BL6NJ_G0037536.1 mouse_genomes_project 5 138969439 138972948 + Gm15903 sense_intronic sense_intronic MGP_C57BL6NJ_T0071504.1 MGP_C57BL6NJ_G0029871.1 mouse_genomes_project 5 33034357 33045219 + MGP_C57BL6NJ_P0071504 Ywhah protein_coding protein_coding MGP_C57BL6NJ_T0071505.1 MGP_C57BL6NJ_G0029871.1 mouse_genomes_project 5 33034419 33036600 + Ywhah protein_coding retained_intron MGP_C57BL6NJ_T0008420.1 MGP_C57BL6NJ_G0006859.1 mouse_genomes_project 5 109252788 109254494 + Gm42618 lincRNA lincRNA MGP_C57BL6NJ_T0075331.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144321834 144360312 - MGP_C57BL6NJ_P0075331 Limk1 protein_coding protein_coding MGP_C57BL6NJ_T0075332.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144321835 144349972 - MGP_C57BL6NJ_P0075332 Limk1 protein_coding protein_coding MGP_C57BL6NJ_T0075333.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144321994 144349944 - MGP_C57BL6NJ_P0075333 Limk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075334.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144329486 144335931 - MGP_C57BL6NJ_P0075334 Limk1 protein_coding protein_coding MGP_C57BL6NJ_T0075335.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144335669 144340145 - Limk1 protein_coding retained_intron MGP_C57BL6NJ_T0075336.1 MGP_C57BL6NJ_G0030593.1 mouse_genomes_project 5 144339898 144360288 - Limk1 protein_coding retained_intron MGP_C57BL6NJ_T0018605.1 MGP_C57BL6NJ_G0015989.1 mouse_genomes_project 5 51460011 51564029 - Gm36814 processed_transcript lincRNA MGP_C57BL6NJ_T0018606.1 MGP_C57BL6NJ_G0015989.1 mouse_genomes_project 5 51542640 51563073 - Gm36814 processed_transcript retained_intron MGP_C57BL6NJ_T0076343.1 MGP_C57BL6NJ_G0030799.1 mouse_genomes_project 5 156908139 156935228 - MGP_C57BL6NJ_P0076343 Cyp3a11 protein_coding protein_coding MGP_C57BL6NJ_T0076346.1 MGP_C57BL6NJ_G0030799.1 mouse_genomes_project 5 156929153 156931955 - Cyp3a11 protein_coding retained_intron MGP_C57BL6NJ_T0015489.1 MGP_C57BL6NJ_G0013534.1 mouse_genomes_project 5 111148438 111148945 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015591.1 MGP_C57BL6NJ_G0013636.1 mouse_genomes_project 5 155577883 155578054 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076598.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162733113 162892631 - MGP_C57BL6NJ_P0076598 Stard13 protein_coding protein_coding MGP_C57BL6NJ_T0076599.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162733319 162892531 - MGP_C57BL6NJ_P0076599 Stard13 protein_coding protein_coding MGP_C57BL6NJ_T0076600.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162758923 162892637 - Stard13 protein_coding processed_transcript MGP_C57BL6NJ_T0076601.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162759024 162785754 - Stard13 protein_coding processed_transcript MGP_C57BL6NJ_T0076603.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162759027 162940071 - MGP_C57BL6NJ_P0076603 Stard13 protein_coding protein_coding MGP_C57BL6NJ_T0076604.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162759074 162793672 - Stard13 protein_coding processed_transcript MGP_C57BL6NJ_T0076605.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162767759 162892587 - Stard13 protein_coding retained_intron MGP_C57BL6NJ_T0076606.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162769803 162940133 - MGP_C57BL6NJ_P0076606 Stard13 protein_coding protein_coding MGP_C57BL6NJ_T0076607.1 MGP_C57BL6NJ_G0030852.1 mouse_genomes_project 5 162793345 162808895 - Stard13 protein_coding processed_transcript MGP_C57BL6NJ_T0076537.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161615800 161667276 + Rxfp2 protein_coding retained_intron MGP_C57BL6NJ_T0076538.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161615800 161681054 + MGP_C57BL6NJ_P0076538 Rxfp2 protein_coding protein_coding MGP_C57BL6NJ_T0076539.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161615800 161681054 + MGP_C57BL6NJ_P0076539 Rxfp2 protein_coding protein_coding MGP_C57BL6NJ_T0076540.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161615831 161681046 + MGP_C57BL6NJ_P0076540 Rxfp2 protein_coding protein_coding MGP_C57BL6NJ_T0076541.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161665092 161668578 + Rxfp2 protein_coding retained_intron MGP_C57BL6NJ_T0076542.1 MGP_C57BL6NJ_G0030844.1 mouse_genomes_project 5 161680393 161681902 + Rxfp2 protein_coding processed_transcript MGP_C57BL6NJ_T0099492.1 MGP_C57BL6NJ_G0037545.1 mouse_genomes_project 5 162216272 162220318 + Gm42531 sense_intronic sense_intronic MGP_C57BL6NJ_T0072470.1 MGP_C57BL6NJ_G0030029.1 mouse_genomes_project 5 70505622 70524755 - MGP_C57BL6NJ_P0072470 Gm21905 protein_coding protein_coding MGP_C57BL6NJ_T0001665.1 MGP_C57BL6NJ_G0001561.1 mouse_genomes_project 5 44462489 44464561 - TEC TEC MGP_C57BL6NJ_T0001956.1 MGP_C57BL6NJ_G0001849.1 mouse_genomes_project 5 132232449 132232912 - TEC TEC MGP_C57BL6NJ_T0074025.1 MGP_C57BL6NJ_G0030368.1 mouse_genomes_project 5 121692065 121706650 - MGP_C57BL6NJ_P0074025 Mmab protein_coding protein_coding MGP_C57BL6NJ_T0074026.1 MGP_C57BL6NJ_G0030368.1 mouse_genomes_project 5 121694231 121706611 - MGP_C57BL6NJ_P0074026 Mmab protein_coding protein_coding MGP_C57BL6NJ_T0074027.1 MGP_C57BL6NJ_G0030368.1 mouse_genomes_project 5 121695659 121706582 - MGP_C57BL6NJ_P0074027 Mmab protein_coding protein_coding MGP_C57BL6NJ_T0073609.1 MGP_C57BL6NJ_G0030282.1 mouse_genomes_project 5 114871636 114884513 + MGP_C57BL6NJ_P0073609 Dr1 protein_coding protein_coding MGP_C57BL6NJ_T0073610.1 MGP_C57BL6NJ_G0030282.1 mouse_genomes_project 5 114880906 114882602 + Dr1 protein_coding processed_transcript MGP_C57BL6NJ_T0070721.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16469832 16544515 - MGP_C57BL6NJ_P0070721 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0070722.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16470158 16530420 - MGP_C57BL6NJ_P0070722 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0070723.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16470509 16584881 - MGP_C57BL6NJ_P0070723 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0070724.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16470511 16544452 - MGP_C57BL6NJ_P0070724 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0070725.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16470628 16530441 - MGP_C57BL6NJ_P0070725 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0070726.1 MGP_C57BL6NJ_G0029736.1 mouse_genomes_project 5 16499428 16584935 - MGP_C57BL6NJ_P0070726 Cd36 protein_coding protein_coding MGP_C57BL6NJ_T0015442.1 MGP_C57BL6NJ_G0013487.1 mouse_genomes_project 5 91927395 91929378 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073424.1 MGP_C57BL6NJ_G0030242.1 mouse_genomes_project 5 110211730 110224092 + MGP_C57BL6NJ_P0073424 Dmp1 protein_coding protein_coding MGP_C57BL6NJ_T0073947.1 MGP_C57BL6NJ_G0030354.1 mouse_genomes_project 5 120992131 120998924 - MGP_C57BL6NJ_P0073947 Tmem119 protein_coding protein_coding MGP_C57BL6NJ_T0073948.1 MGP_C57BL6NJ_G0030354.1 mouse_genomes_project 5 120994040 120998854 - MGP_C57BL6NJ_P0073948 Tmem119 protein_coding protein_coding MGP_C57BL6NJ_T0075577.1 MGP_C57BL6NJ_G0030639.1 mouse_genomes_project 5 146877652 146882427 + MGP_C57BL6NJ_P0075577 Ift22 protein_coding protein_coding MGP_C57BL6NJ_T0075578.1 MGP_C57BL6NJ_G0030639.1 mouse_genomes_project 5 146877656 146881577 + MGP_C57BL6NJ_P0075578 Ift22 protein_coding protein_coding MGP_C57BL6NJ_T0075579.1 MGP_C57BL6NJ_G0030639.1 mouse_genomes_project 5 146877686 146882428 + MGP_C57BL6NJ_P0075579 Ift22 protein_coding protein_coding MGP_C57BL6NJ_T0075580.1 MGP_C57BL6NJ_G0030639.1 mouse_genomes_project 5 146880340 146880914 + Ift22 protein_coding retained_intron MGP_C57BL6NJ_T0015608.1 MGP_C57BL6NJ_G0013653.1 mouse_genomes_project 5 158694977 158695199 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076247.1 MGP_C57BL6NJ_G0030779.1 mouse_genomes_project 5 155047479 155069494 + MGP_C57BL6NJ_P0076247 Bri3 protein_coding protein_coding MGP_C57BL6NJ_T0076248.1 MGP_C57BL6NJ_G0030779.1 mouse_genomes_project 5 155058338 155275105 + MGP_C57BL6NJ_P0076248 Bri3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076249.1 MGP_C57BL6NJ_G0030779.1 mouse_genomes_project 5 155058347 155069673 + MGP_C57BL6NJ_P0076249 Bri3 protein_coding protein_coding MGP_C57BL6NJ_T0071123.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857090 29889562 + MGP_C57BL6NJ_P0071123 Hadhb protein_coding protein_coding MGP_C57BL6NJ_T0071124.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857100 29876766 + MGP_C57BL6NJ_P0071124 Hadhb protein_coding protein_coding MGP_C57BL6NJ_T0071125.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857114 29889553 + MGP_C57BL6NJ_P0071125 Hadhb protein_coding protein_coding MGP_C57BL6NJ_T0071126.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857114 29889562 + MGP_C57BL6NJ_P0071126 Hadhb protein_coding protein_coding MGP_C57BL6NJ_T0071127.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857117 29870086 + Hadhb protein_coding retained_intron MGP_C57BL6NJ_T0071128.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29857145 29878704 + MGP_C57BL6NJ_P0071128 Hadhb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071129.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29876770 29882511 + Hadhb protein_coding retained_intron MGP_C57BL6NJ_T0071130.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29881987 29884392 + Hadhb protein_coding retained_intron MGP_C57BL6NJ_T0071131.1 MGP_C57BL6NJ_G0029815.1 mouse_genomes_project 5 29883648 29887653 + Hadhb protein_coding retained_intron MGP_C57BL6NJ_T0103202.1 MGP_C57BL6NJ_G0040996.1 mouse_genomes_project 5 91715342 91736144 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0073812.1 MGP_C57BL6NJ_G0030324.1 mouse_genomes_project 5 117763508 117775587 - MGP_C57BL6NJ_P0073812 Hscb protein_coding protein_coding MGP_C57BL6NJ_T0073813.1 MGP_C57BL6NJ_G0030324.1 mouse_genomes_project 5 117763518 117775385 - MGP_C57BL6NJ_P0073813 Hscb protein_coding protein_coding MGP_C57BL6NJ_T0073814.1 MGP_C57BL6NJ_G0030324.1 mouse_genomes_project 5 117763518 117770532 - MGP_C57BL6NJ_P0073814 Hscb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073815.1 MGP_C57BL6NJ_G0030324.1 mouse_genomes_project 5 117763519 117769108 - Hscb protein_coding retained_intron MGP_C57BL6NJ_T0018622.1 MGP_C57BL6NJ_G0015994.1 mouse_genomes_project 5 68133611 68136487 - processed_transcript antisense MGP_C57BL6NJ_T0018623.1 MGP_C57BL6NJ_G0015994.1 mouse_genomes_project 5 68134065 68135978 - processed_transcript antisense MGP_C57BL6NJ_T0018624.1 MGP_C57BL6NJ_G0015994.1 mouse_genomes_project 5 68134992 68142010 - processed_transcript retained_intron MGP_C57BL6NJ_T0075602.1 MGP_C57BL6NJ_G0030644.1 mouse_genomes_project 5 147014907 147021792 + MGP_C57BL6NJ_P0075602 Vgf protein_coding protein_coding MGP_C57BL6NJ_T0075603.1 MGP_C57BL6NJ_G0030644.1 mouse_genomes_project 5 147018735 147021792 + MGP_C57BL6NJ_P0075603 Vgf protein_coding protein_coding MGP_C57BL6NJ_T0075604.1 MGP_C57BL6NJ_G0030644.1 mouse_genomes_project 5 147018804 147021469 + MGP_C57BL6NJ_P0075604 Vgf protein_coding protein_coding MGP_C57BL6NJ_T0075605.1 MGP_C57BL6NJ_G0030644.1 mouse_genomes_project 5 147019141 147019848 + MGP_C57BL6NJ_P0075605 Vgf protein_coding protein_coding MGP_C57BL6NJ_T0010922.1 MGP_C57BL6NJ_G0009007.1 mouse_genomes_project 5 34707623 34707686 + Mir7036b miRNA miRNA MGP_C57BL6NJ_T0001945.1 MGP_C57BL6NJ_G0001838.1 mouse_genomes_project 5 130849867 130850193 + TEC TEC MGP_C57BL6NJ_T0100437.1 MGP_C57BL6NJ_G0038483.1 mouse_genomes_project 5 36890709 36890813 - Gm24878 snRNA snRNA MGP_C57BL6NJ_T0008474.1 MGP_C57BL6NJ_G0006893.1 mouse_genomes_project 5 119255990 119259230 + 1700028D13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008475.1 MGP_C57BL6NJ_G0006893.1 mouse_genomes_project 5 119256033 119259232 + 1700028D13Rik lincRNA lincRNA MGP_C57BL6NJ_T0072991.1 MGP_C57BL6NJ_G0030147.1 mouse_genomes_project 5 94365842 94571056 - MGP_C57BL6NJ_P0072991 Adamts3 protein_coding protein_coding MGP_C57BL6NJ_T0072992.1 MGP_C57BL6NJ_G0030147.1 mouse_genomes_project 5 94365842 94571056 - MGP_C57BL6NJ_P0072992 Adamts3 protein_coding protein_coding MGP_C57BL6NJ_T0072993.1 MGP_C57BL6NJ_G0030147.1 mouse_genomes_project 5 94522721 94571455 - MGP_C57BL6NJ_P0072993 Adamts3 protein_coding protein_coding MGP_C57BL6NJ_T0072994.1 MGP_C57BL6NJ_G0030147.1 mouse_genomes_project 5 94549539 94570268 - Adamts3 protein_coding processed_transcript MGP_C57BL6NJ_T0074773.1 MGP_C57BL6NJ_G0030504.1 mouse_genomes_project 5 132203554 132245434 - MGP_C57BL6NJ_P0074773 Vps33a protein_coding protein_coding MGP_C57BL6NJ_T0074774.1 MGP_C57BL6NJ_G0030504.1 mouse_genomes_project 5 132222008 132229944 - Vps33a protein_coding retained_intron MGP_C57BL6NJ_T0074775.1 MGP_C57BL6NJ_G0030504.1 mouse_genomes_project 5 132234284 132241985 - Vps33a protein_coding retained_intron MGP_C57BL6NJ_T0074776.1 MGP_C57BL6NJ_G0030504.1 mouse_genomes_project 5 132235986 132245375 - MGP_C57BL6NJ_P0074776 Vps33a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071091.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29349333 29407228 + MGP_C57BL6NJ_P0071091 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071092.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29349339 29375785 + MGP_C57BL6NJ_P0071092 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071093.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29349368 29352445 + Dnajb6 protein_coding processed_transcript MGP_C57BL6NJ_T0071094.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29349377 29449422 + MGP_C57BL6NJ_P0071094 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071095.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29349610 29406016 + MGP_C57BL6NJ_P0071095 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071096.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29350610 29364084 + MGP_C57BL6NJ_P0071096 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071097.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29364725 29370514 + Dnajb6 protein_coding retained_intron MGP_C57BL6NJ_T0071098.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29371317 29402610 + MGP_C57BL6NJ_P0071098 Dnajb6 protein_coding protein_coding MGP_C57BL6NJ_T0071099.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29372115 29375776 + Dnajb6 protein_coding processed_transcript MGP_C57BL6NJ_T0071100.1 MGP_C57BL6NJ_G0029809.1 mouse_genomes_project 5 29382102 29383549 + Dnajb6 protein_coding retained_intron MGP_C57BL6NJ_T0070772.1 MGP_C57BL6NJ_G0029745.1 mouse_genomes_project 5 20230680 20376208 - MGP_C57BL6NJ_P0070772 Ccdc146 protein_coding protein_coding MGP_C57BL6NJ_T0070773.1 MGP_C57BL6NJ_G0029745.1 mouse_genomes_project 5 20255134 20376208 - MGP_C57BL6NJ_P0070773 Ccdc146 protein_coding protein_coding MGP_C57BL6NJ_T0070774.1 MGP_C57BL6NJ_G0029745.1 mouse_genomes_project 5 20255417 20274138 - Ccdc146 protein_coding retained_intron MGP_C57BL6NJ_T0070775.1 MGP_C57BL6NJ_G0029745.1 mouse_genomes_project 5 20257317 20260884 - Ccdc146 protein_coding retained_intron MGP_C57BL6NJ_T0070776.1 MGP_C57BL6NJ_G0029745.1 mouse_genomes_project 5 20260937 20274352 - Ccdc146 protein_coding processed_transcript MGP_C57BL6NJ_T0004798.1 MGP_C57BL6NJ_G0004151.1 mouse_genomes_project 5 14599438 14603291 - Gm43000 antisense antisense MGP_C57BL6NJ_T0076345.1 MGP_C57BL6NJ_G0030801.1 mouse_genomes_project 5 156908417 156935123 - MGP_C57BL6NJ_P0076345 protein_coding protein_coding MGP_C57BL6NJ_T0001844.1 MGP_C57BL6NJ_G0001737.1 mouse_genomes_project 5 86104996 86106414 - TEC TEC MGP_C57BL6NJ_T0073258.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105647334 105670251 - MGP_C57BL6NJ_P0073258 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0073259.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105651995 105670250 - MGP_C57BL6NJ_P0073259 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0073260.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105652395 105670230 - MGP_C57BL6NJ_P0073260 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0073261.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105652399 105670248 - MGP_C57BL6NJ_P0073261 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0073262.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105652400 105667945 - MGP_C57BL6NJ_P0073262 Hnrnpd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073263.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105652548 105657572 - MGP_C57BL6NJ_P0073263 Hnrnpd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073264.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105652565 105656148 - MGP_C57BL6NJ_P0073264 Hnrnpd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073265.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105653680 105669937 - MGP_C57BL6NJ_P0073265 Hnrnpd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073266.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105656140 105657785 - Hnrnpd protein_coding retained_intron MGP_C57BL6NJ_T0073267.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105657424 105670247 - MGP_C57BL6NJ_P0073267 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0073268.1 MGP_C57BL6NJ_G0030211.1 mouse_genomes_project 5 105658705 105670172 - MGP_C57BL6NJ_P0073268 Hnrnpd protein_coding protein_coding MGP_C57BL6NJ_T0075837.1 MGP_C57BL6NJ_G0030691.1 mouse_genomes_project 5 148371466 148389273 + MGP_C57BL6NJ_P0075837 Nxpe5 protein_coding protein_coding MGP_C57BL6NJ_T0075838.1 MGP_C57BL6NJ_G0030691.1 mouse_genomes_project 5 148371472 148399749 + MGP_C57BL6NJ_P0075838 Nxpe5 protein_coding protein_coding MGP_C57BL6NJ_T0075839.1 MGP_C57BL6NJ_G0030691.1 mouse_genomes_project 5 148371472 148399750 + MGP_C57BL6NJ_P0075839 Nxpe5 protein_coding protein_coding MGP_C57BL6NJ_T0075840.1 MGP_C57BL6NJ_G0030691.1 mouse_genomes_project 5 148375860 148400393 + MGP_C57BL6NJ_P0075840 Nxpe5 protein_coding protein_coding MGP_C57BL6NJ_T0075841.1 MGP_C57BL6NJ_G0030691.1 mouse_genomes_project 5 148375860 148401237 + MGP_C57BL6NJ_P0075841 Nxpe5 protein_coding protein_coding MGP_C57BL6NJ_T0070831.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21506154 21574141 - Orc5 protein_coding retained_intron MGP_C57BL6NJ_T0070832.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21506158 21574212 - MGP_C57BL6NJ_P0070832 Orc5 protein_coding protein_coding MGP_C57BL6NJ_T0070833.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21541585 21547014 - Orc5 protein_coding retained_intron MGP_C57BL6NJ_T0070834.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21547863 21573355 - MGP_C57BL6NJ_P0070834 Orc5 protein_coding protein_coding MGP_C57BL6NJ_T0070835.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21547898 21574212 - Orc5 protein_coding processed_transcript MGP_C57BL6NJ_T0070836.1 MGP_C57BL6NJ_G0029757.1 mouse_genomes_project 5 21570234 21574266 - Orc5 protein_coding processed_transcript MGP_C57BL6NJ_T0002029.1 MGP_C57BL6NJ_G0001920.1 mouse_genomes_project 5 150571005 150576057 - TEC TEC MGP_C57BL6NJ_T0073389.1 MGP_C57BL6NJ_G0030232.1 mouse_genomes_project 5 109531531 109560027 - MGP_C57BL6NJ_P0073389 Slc10a6 protein_coding protein_coding MGP_C57BL6NJ_T0015285.1 MGP_C57BL6NJ_G0013330.1 mouse_genomes_project 5 22506328 22506452 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070453.1 MGP_C57BL6NJ_G0029691.1 mouse_genomes_project 5 706186 719865 - MGP_C57BL6NJ_P0070453 Gatad1 protein_coding protein_coding MGP_C57BL6NJ_T0070457.1 MGP_C57BL6NJ_G0029691.1 mouse_genomes_project 5 719715 725953 - MGP_C57BL6NJ_P0070457 Gatad1 protein_coding protein_coding MGP_C57BL6NJ_T0070458.1 MGP_C57BL6NJ_G0029691.1 mouse_genomes_project 5 721402 726140 - MGP_C57BL6NJ_P0070458 Gatad1 protein_coding protein_coding MGP_C57BL6NJ_T0005019.1 MGP_C57BL6NJ_G0004312.1 mouse_genomes_project 5 144850594 144851478 - Gm43500 antisense antisense MGP_C57BL6NJ_T0073841.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119337488 119383204 + MGP_C57BL6NJ_P0073841 Tpst2 protein_coding protein_coding MGP_C57BL6NJ_T0073842.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119337501 119376933 + Tpst2 protein_coding retained_intron MGP_C57BL6NJ_T0073843.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119337504 119383198 + MGP_C57BL6NJ_P0073843 Tpst2 protein_coding protein_coding MGP_C57BL6NJ_T0073844.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119351442 119375637 + MGP_C57BL6NJ_P0073844 Tpst2 protein_coding protein_coding MGP_C57BL6NJ_T0073845.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119371799 119382800 + MGP_C57BL6NJ_P0073845 Tpst2 protein_coding protein_coding MGP_C57BL6NJ_T0073846.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119376191 119377713 + MGP_C57BL6NJ_P0073846 Tpst2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073847.1 MGP_C57BL6NJ_G0030332.1 mouse_genomes_project 5 119380736 119382807 + Tpst2 protein_coding retained_intron MGP_C57BL6NJ_T0072295.1 MGP_C57BL6NJ_G0030006.1 mouse_genomes_project 5 67663519 67699452 + MGP_C57BL6NJ_P0072295 Klb protein_coding protein_coding MGP_C57BL6NJ_T0072296.1 MGP_C57BL6NJ_G0030006.1 mouse_genomes_project 5 67663612 67665451 + Klb protein_coding retained_intron MGP_C57BL6NJ_T0072297.1 MGP_C57BL6NJ_G0030006.1 mouse_genomes_project 5 67663613 67694972 + MGP_C57BL6NJ_P0072297 Klb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001653.1 MGP_C57BL6NJ_G0001549.1 mouse_genomes_project 5 38370681 38370976 - TEC TEC MGP_C57BL6NJ_T0075151.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139227469 139241736 - MGP_C57BL6NJ_P0075151 Gusb protein_coding protein_coding MGP_C57BL6NJ_T0075152.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139227481 139241515 - MGP_C57BL6NJ_P0075152 Gusb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075153.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139228039 139229101 - Gusb protein_coding retained_intron MGP_C57BL6NJ_T0075154.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139237342 139241552 - MGP_C57BL6NJ_P0075154 Gusb protein_coding protein_coding MGP_C57BL6NJ_T0075155.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139238282 139241568 - MGP_C57BL6NJ_P0075155 Gusb protein_coding protein_coding MGP_C57BL6NJ_T0075156.1 MGP_C57BL6NJ_G0030568.1 mouse_genomes_project 5 139238305 139241652 - Gusb protein_coding retained_intron MGP_C57BL6NJ_T0099111.1 MGP_C57BL6NJ_G0037175.1 mouse_genomes_project 5 22816435 22816528 - Gm24009 rRNA rRNA MGP_C57BL6NJ_T0072333.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67954562 68061229 - MGP_C57BL6NJ_P0072333 Pds5a protein_coding protein_coding MGP_C57BL6NJ_T0072334.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67954564 67962476 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072335.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67956611 67971307 - MGP_C57BL6NJ_P0072335 Pds5a protein_coding protein_coding MGP_C57BL6NJ_T0072336.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67960894 68060911 - MGP_C57BL6NJ_P0072336 Pds5a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0072337.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67965962 68060917 - MGP_C57BL6NJ_P0072337 Pds5a protein_coding protein_coding MGP_C57BL6NJ_T0072338.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67966118 67973255 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072339.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67973576 68003578 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072340.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67973591 67980097 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072341.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67974051 67981115 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072342.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67974528 67981546 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072343.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67989238 67992043 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072344.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67995207 67998263 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072345.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 67999120 68061334 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072346.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 68007235 68008385 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0072347.1 MGP_C57BL6NJ_G0030013.1 mouse_genomes_project 5 68022795 68059919 - Pds5a protein_coding retained_intron MGP_C57BL6NJ_T0008423.1 MGP_C57BL6NJ_G0006862.1 mouse_genomes_project 5 110561489 110591591 + D930016D06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008424.1 MGP_C57BL6NJ_G0006862.1 mouse_genomes_project 5 110561623 110576740 + D930016D06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008425.1 MGP_C57BL6NJ_G0006862.1 mouse_genomes_project 5 110578691 110589467 + D930016D06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008426.1 MGP_C57BL6NJ_G0006862.1 mouse_genomes_project 5 110579303 110588874 + D930016D06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008427.1 MGP_C57BL6NJ_G0006862.1 mouse_genomes_project 5 110579345 110590892 + D930016D06Rik lincRNA lincRNA MGP_C57BL6NJ_T0001887.1 MGP_C57BL6NJ_G0001780.1 mouse_genomes_project 5 114419764 114420929 + TEC TEC MGP_C57BL6NJ_T0005058.1 MGP_C57BL6NJ_G0004340.1 mouse_genomes_project 5 161666480 161682513 - Gm42557 antisense antisense MGP_C57BL6NJ_T0008629.1 MGP_C57BL6NJ_G0006999.1 mouse_genomes_project 5 160226178 160246175 + lincRNA lincRNA MGP_C57BL6NJ_T0001965.1 MGP_C57BL6NJ_G0001857.1 mouse_genomes_project 5 134157967 134160731 - TEC TEC MGP_C57BL6NJ_T0015553.1 MGP_C57BL6NJ_G0013598.1 mouse_genomes_project 5 143040688 143041654 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072601.1 MGP_C57BL6NJ_G0030056.1 mouse_genomes_project 5 76425596 76482094 + MGP_C57BL6NJ_P0072601 Cwh43 protein_coding protein_coding MGP_C57BL6NJ_T0072602.1 MGP_C57BL6NJ_G0030056.1 mouse_genomes_project 5 76425748 76482104 + MGP_C57BL6NJ_P0072602 Cwh43 protein_coding protein_coding MGP_C57BL6NJ_T0072603.1 MGP_C57BL6NJ_G0030056.1 mouse_genomes_project 5 76455852 76460120 + Cwh43 protein_coding retained_intron MGP_C57BL6NJ_T0005009.1 MGP_C57BL6NJ_G0004305.1 mouse_genomes_project 5 141376647 141386663 + Gm42439 antisense antisense MGP_C57BL6NJ_T0071936.1 MGP_C57BL6NJ_G0029941.1 mouse_genomes_project 5 38624783 38654634 + MGP_C57BL6NJ_P0071936 Otop1 protein_coding protein_coding MGP_C57BL6NJ_T0071937.1 MGP_C57BL6NJ_G0029941.1 mouse_genomes_project 5 38626215 38654642 + Otop1 protein_coding processed_transcript MGP_C57BL6NJ_T0071938.1 MGP_C57BL6NJ_G0029941.1 mouse_genomes_project 5 38626215 38654633 + MGP_C57BL6NJ_P0071938 Otop1 protein_coding protein_coding MGP_C57BL6NJ_T0071939.1 MGP_C57BL6NJ_G0029941.1 mouse_genomes_project 5 38636458 38653802 + Otop1 protein_coding processed_transcript MGP_C57BL6NJ_T0010926.1 MGP_C57BL6NJ_G0009011.1 mouse_genomes_project 5 42523401 42523483 + Mir6414 miRNA miRNA MGP_C57BL6NJ_T0004863.1 MGP_C57BL6NJ_G0004203.1 mouse_genomes_project 5 68602166 68627629 - 1700126H18Rik antisense antisense MGP_C57BL6NJ_T0015306.1 MGP_C57BL6NJ_G0013351.1 mouse_genomes_project 5 27316929 27317350 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099271.1 MGP_C57BL6NJ_G0037335.1 mouse_genomes_project 5 96923774 96923903 - Gm22728 scaRNA scaRNA MGP_C57BL6NJ_T0072819.1 MGP_C57BL6NJ_G0030092.1 mouse_genomes_project 5 87339018 87423191 - MGP_C57BL6NJ_P0072819 Tecrl protein_coding protein_coding MGP_C57BL6NJ_T0072820.1 MGP_C57BL6NJ_G0030092.1 mouse_genomes_project 5 87355935 87422952 - MGP_C57BL6NJ_P0072820 Tecrl protein_coding protein_coding MGP_C57BL6NJ_T0015604.1 MGP_C57BL6NJ_G0013649.1 mouse_genomes_project 5 158316740 158317232 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015375.1 MGP_C57BL6NJ_G0013420.1 mouse_genomes_project 5 58982284 58982915 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008401.1 MGP_C57BL6NJ_G0006846.1 mouse_genomes_project 5 105148898 105151547 + Gm43253 lincRNA lincRNA MGP_C57BL6NJ_T0073233.1 MGP_C57BL6NJ_G0030203.1 mouse_genomes_project 5 103701335 103709349 + MGP_C57BL6NJ_P0073233 Prdm8 protein_coding protein_coding MGP_C57BL6NJ_T0008470.1 MGP_C57BL6NJ_G0006890.1 mouse_genomes_project 5 118803470 118817601 + Gm42487 lincRNA lincRNA MGP_C57BL6NJ_T0008471.1 MGP_C57BL6NJ_G0006890.1 mouse_genomes_project 5 118805302 118817518 + Gm42487 lincRNA lincRNA MGP_C57BL6NJ_T0008262.1 MGP_C57BL6NJ_G0006738.1 mouse_genomes_project 5 31418853 31420656 - AI839979 lincRNA lincRNA MGP_C57BL6NJ_T0008263.1 MGP_C57BL6NJ_G0006738.1 mouse_genomes_project 5 31419363 31420650 - AI839979 lincRNA lincRNA MGP_C57BL6NJ_T0073671.1 MGP_C57BL6NJ_G0030294.1 mouse_genomes_project 5 115353748 115368179 + MGP_C57BL6NJ_P0073671 Fgfrl1 protein_coding protein_coding MGP_C57BL6NJ_T0073672.1 MGP_C57BL6NJ_G0030294.1 mouse_genomes_project 5 115357165 115367982 + MGP_C57BL6NJ_P0073672 Fgfrl1 protein_coding protein_coding MGP_C57BL6NJ_T0073673.1 MGP_C57BL6NJ_G0030294.1 mouse_genomes_project 5 115357203 115371567 + MGP_C57BL6NJ_P0073673 Fgfrl1 protein_coding protein_coding MGP_C57BL6NJ_T0073674.1 MGP_C57BL6NJ_G0030294.1 mouse_genomes_project 5 115357437 115371539 + MGP_C57BL6NJ_P0073674 Fgfrl1 protein_coding protein_coding MGP_C57BL6NJ_T0073675.1 MGP_C57BL6NJ_G0030294.1 mouse_genomes_project 5 115369716 115370515 + Fgfrl1 protein_coding retained_intron MGP_C57BL6NJ_T0075774.1 MGP_C57BL6NJ_G0030678.1 mouse_genomes_project 5 147891964 147933900 - MGP_C57BL6NJ_P0075774 protein_coding protein_coding MGP_C57BL6NJ_T0075775.1 MGP_C57BL6NJ_G0030678.1 mouse_genomes_project 5 147891964 147917319 - MGP_C57BL6NJ_P0075775 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075777.1 MGP_C57BL6NJ_G0030678.1 mouse_genomes_project 5 147891966 147920104 - MGP_C57BL6NJ_P0075777 protein_coding protein_coding MGP_C57BL6NJ_T0075780.1 MGP_C57BL6NJ_G0030678.1 mouse_genomes_project 5 147911333 147912231 - MGP_C57BL6NJ_P0075780 protein_coding protein_coding MGP_C57BL6NJ_T0073955.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121045829 121115805 - MGP_C57BL6NJ_P0073955 Coro1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073956.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121045829 121115858 - MGP_C57BL6NJ_P0073956 Coro1c protein_coding protein_coding MGP_C57BL6NJ_T0073957.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121048636 121054277 - Coro1c protein_coding retained_intron MGP_C57BL6NJ_T0073958.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121048647 121053280 - Coro1c protein_coding retained_intron MGP_C57BL6NJ_T0073959.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121049582 121051014 - Coro1c protein_coding retained_intron MGP_C57BL6NJ_T0073960.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121051501 121053085 - Coro1c protein_coding retained_intron MGP_C57BL6NJ_T0073961.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121051946 121078077 - Coro1c protein_coding processed_transcript MGP_C57BL6NJ_T0073962.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121052005 121062189 - Coro1c protein_coding processed_transcript MGP_C57BL6NJ_T0073963.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121069160 121086313 - MGP_C57BL6NJ_P0073963 Coro1c protein_coding protein_coding MGP_C57BL6NJ_T0073964.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121069218 121085799 - MGP_C57BL6NJ_P0073964 Coro1c protein_coding protein_coding MGP_C57BL6NJ_T0073965.1 MGP_C57BL6NJ_G0030356.1 mouse_genomes_project 5 121080429 121115745 - Coro1c protein_coding retained_intron MGP_C57BL6NJ_T0072009.1 MGP_C57BL6NJ_G0029956.1 mouse_genomes_project 5 44501382 44510193 + MGP_C57BL6NJ_P0072009 Bst1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072010.1 MGP_C57BL6NJ_G0029956.1 mouse_genomes_project 5 44501388 44525788 + MGP_C57BL6NJ_P0072010 Bst1 protein_coding protein_coding MGP_C57BL6NJ_T0072011.1 MGP_C57BL6NJ_G0029956.1 mouse_genomes_project 5 44505424 44525268 + Bst1 protein_coding retained_intron MGP_C57BL6NJ_T0072012.1 MGP_C57BL6NJ_G0029956.1 mouse_genomes_project 5 44518915 44524212 + Bst1 protein_coding retained_intron MGP_C57BL6NJ_T0015575.1 MGP_C57BL6NJ_G0013620.1 mouse_genomes_project 5 148842017 148842568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001748.1 MGP_C57BL6NJ_G0001643.1 mouse_genomes_project 5 59544288 59545755 + TEC TEC MGP_C57BL6NJ_T0070421.1 MGP_C57BL6NJ_G0029685.1 mouse_genomes_project 5 353022 353540 + MGP_C57BL6NJ_P0070421 protein_coding protein_coding MGP_C57BL6NJ_T0071152.1 MGP_C57BL6NJ_G0029820.1 mouse_genomes_project 5 30140424 30156750 + MGP_C57BL6NJ_P0071152 1700001C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0071153.1 MGP_C57BL6NJ_G0029820.1 mouse_genomes_project 5 30140432 30159892 + MGP_C57BL6NJ_P0071153 1700001C02Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071154.1 MGP_C57BL6NJ_G0029820.1 mouse_genomes_project 5 30140436 30159936 + MGP_C57BL6NJ_P0071154 1700001C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0071155.1 MGP_C57BL6NJ_G0029820.1 mouse_genomes_project 5 30140461 30159915 + MGP_C57BL6NJ_P0071155 1700001C02Rik protein_coding protein_coding MGP_C57BL6NJ_T0076148.1 MGP_C57BL6NJ_G0030759.1 mouse_genomes_project 5 154054396 154068248 - E130309D02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0076149.1 MGP_C57BL6NJ_G0030759.1 mouse_genomes_project 5 154054408 154068544 - MGP_C57BL6NJ_P0076149 E130309D02Rik protein_coding protein_coding MGP_C57BL6NJ_T0076150.1 MGP_C57BL6NJ_G0030759.1 mouse_genomes_project 5 154054410 154068315 - E130309D02Rik protein_coding retained_intron MGP_C57BL6NJ_T0076151.1 MGP_C57BL6NJ_G0030759.1 mouse_genomes_project 5 154061492 154068524 - E130309D02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0005037.1 MGP_C57BL6NJ_G0004325.1 mouse_genomes_project 5 150519691 150526084 + Gm16121 antisense antisense MGP_C57BL6NJ_T0015330.1 MGP_C57BL6NJ_G0013375.1 mouse_genomes_project 5 34146622 34147079 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015544.1 MGP_C57BL6NJ_G0013589.1 mouse_genomes_project 5 130920161 130920481 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070931.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23659447 23666202 - MGP_C57BL6NJ_P0070931 Fastk protein_coding protein_coding MGP_C57BL6NJ_T0070932.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23659448 23666194 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070934.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662046 23663223 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070935.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662046 23666295 - MGP_C57BL6NJ_P0070935 Fastk protein_coding protein_coding MGP_C57BL6NJ_T0070936.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662046 23666214 - MGP_C57BL6NJ_P0070936 Fastk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070937.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662047 23666195 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070938.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662047 23662532 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070939.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662050 23666216 - MGP_C57BL6NJ_P0070939 Fastk protein_coding protein_coding MGP_C57BL6NJ_T0070940.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662535 23663109 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070941.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662627 23663306 - Fastk protein_coding processed_transcript MGP_C57BL6NJ_T0070942.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23662931 23664966 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070943.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23663078 23666246 - Fastk protein_coding processed_transcript MGP_C57BL6NJ_T0070944.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23664308 23666216 - Fastk protein_coding retained_intron MGP_C57BL6NJ_T0070945.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23664376 23666205 - Fastk protein_coding processed_transcript MGP_C57BL6NJ_T0070946.1 MGP_C57BL6NJ_G0029774.1 mouse_genomes_project 5 23664938 23666205 - Fastk protein_coding processed_transcript MGP_C57BL6NJ_T0004881.1 MGP_C57BL6NJ_G0004218.1 mouse_genomes_project 5 79538996 79539648 + Gm7467 antisense antisense MGP_C57BL6NJ_T0076356.1 MGP_C57BL6NJ_G0030810.1 mouse_genomes_project 5 157317942 157323167 - MGP_C57BL6NJ_P0076356 Gm6309 protein_coding protein_coding MGP_C57BL6NJ_T0008314.1 MGP_C57BL6NJ_G0006775.1 mouse_genomes_project 5 53734304 53745759 - 8030423F21Rik lincRNA lincRNA MGP_C57BL6NJ_T0004791.1 MGP_C57BL6NJ_G0004145.1 mouse_genomes_project 5 703014 704960 - 4833413G10Rik antisense antisense MGP_C57BL6NJ_T0071880.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37577790 37617666 - MGP_C57BL6NJ_P0071880 Evc protein_coding protein_coding MGP_C57BL6NJ_T0071881.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37578347 37588114 - MGP_C57BL6NJ_P0071881 Evc protein_coding protein_coding MGP_C57BL6NJ_T0071882.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37579064 37593237 - Evc protein_coding retained_intron MGP_C57BL6NJ_T0071883.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37579109 37580239 - MGP_C57BL6NJ_P0071883 Evc protein_coding protein_coding MGP_C57BL6NJ_T0071884.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37594141 37617739 - MGP_C57BL6NJ_P0071884 Evc protein_coding protein_coding MGP_C57BL6NJ_T0071885.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37595437 37599245 - Evc protein_coding retained_intron MGP_C57BL6NJ_T0071886.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37597088 37599364 - Evc protein_coding retained_intron MGP_C57BL6NJ_T0071887.1 MGP_C57BL6NJ_G0029931.1 mouse_genomes_project 5 37600063 37617751 - Evc protein_coding retained_intron MGP_C57BL6NJ_T0015331.1 MGP_C57BL6NJ_G0013376.1 mouse_genomes_project 5 34189681 34190012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015474.1 MGP_C57BL6NJ_G0013519.1 mouse_genomes_project 5 105265828 105266637 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011860.1 MGP_C57BL6NJ_G0009945.1 mouse_genomes_project 5 96838143 96838419 + Gm24113 misc_RNA misc_RNA MGP_C57BL6NJ_T0072874.1 MGP_C57BL6NJ_G0030109.1 mouse_genomes_project 5 91555407 91587165 - MGP_C57BL6NJ_P0072874 Ugt2b36 protein_coding protein_coding MGP_C57BL6NJ_T0072875.1 MGP_C57BL6NJ_G0030109.1 mouse_genomes_project 5 91555918 91587158 - MGP_C57BL6NJ_P0072875 Ugt2b36 protein_coding protein_coding MGP_C57BL6NJ_T0072876.1 MGP_C57BL6NJ_G0030109.1 mouse_genomes_project 5 91555921 91585767 - Ugt2b36 protein_coding retained_intron MGP_C57BL6NJ_T0072877.1 MGP_C57BL6NJ_G0030109.1 mouse_genomes_project 5 91574167 91587156 - MGP_C57BL6NJ_P0072877 Ugt2b36 protein_coding protein_coding MGP_C57BL6NJ_T0015309.1 MGP_C57BL6NJ_G0013354.1 mouse_genomes_project 5 29135007 29135364 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015279.1 MGP_C57BL6NJ_G0013324.1 mouse_genomes_project 5 21299220 21299592 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103191.1 MGP_C57BL6NJ_G0040985.1 mouse_genomes_project 5 15904809 15909037 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099472.1 MGP_C57BL6NJ_G0037529.1 mouse_genomes_project 5 106582648 106583072 - Gm43514 sense_intronic sense_intronic MGP_C57BL6NJ_T0001998.1 MGP_C57BL6NJ_G0001890.1 mouse_genomes_project 5 141393658 141397495 - TEC TEC MGP_C57BL6NJ_T0074082.1 MGP_C57BL6NJ_G0030379.1 mouse_genomes_project 5 122205927 122236153 + MGP_C57BL6NJ_P0074082 4930519G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0074084.1 MGP_C57BL6NJ_G0030379.1 mouse_genomes_project 5 122211999 122228984 + 4930519G04Rik protein_coding retained_intron MGP_C57BL6NJ_T0074085.1 MGP_C57BL6NJ_G0030379.1 mouse_genomes_project 5 122215788 122232038 + MGP_C57BL6NJ_P0074085 4930519G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0074086.1 MGP_C57BL6NJ_G0030379.1 mouse_genomes_project 5 122217754 122232038 + MGP_C57BL6NJ_P0074086 4930519G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0071389.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298166 31316552 + MGP_C57BL6NJ_P0071389 Zfp512 protein_coding protein_coding MGP_C57BL6NJ_T0071390.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298170 31331649 + MGP_C57BL6NJ_P0071390 Zfp512 protein_coding protein_coding MGP_C57BL6NJ_T0071391.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298185 31323351 + MGP_C57BL6NJ_P0071391 Zfp512 protein_coding protein_coding MGP_C57BL6NJ_T0071392.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298215 31306544 + Zfp512 protein_coding retained_intron MGP_C57BL6NJ_T0071393.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298251 31331644 + MGP_C57BL6NJ_P0071393 Zfp512 protein_coding protein_coding MGP_C57BL6NJ_T0071394.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298253 31299161 + Zfp512 protein_coding retained_intron MGP_C57BL6NJ_T0071395.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31298890 31316449 + Zfp512 protein_coding retained_intron MGP_C57BL6NJ_T0071396.1 MGP_C57BL6NJ_G0029855.1 mouse_genomes_project 5 31315481 31322738 + MGP_C57BL6NJ_P0071396 Zfp512 protein_coding protein_coding MGP_C57BL6NJ_T0076096.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153400166 153475285 - MGP_C57BL6NJ_P0076096 protein_coding protein_coding MGP_C57BL6NJ_T0076097.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153407640 153414122 - protein_coding processed_transcript MGP_C57BL6NJ_T0076098.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153408495 153414665 - protein_coding retained_intron MGP_C57BL6NJ_T0076099.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153435761 153504476 - MGP_C57BL6NJ_P0076099 protein_coding protein_coding MGP_C57BL6NJ_T0076100.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153445287 153446995 - protein_coding retained_intron MGP_C57BL6NJ_T0076101.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153475070 153487192 - protein_coding processed_transcript MGP_C57BL6NJ_T0076102.1 MGP_C57BL6NJ_G0030748.1 mouse_genomes_project 5 153479763 153504194 - MGP_C57BL6NJ_P0076102 protein_coding protein_coding MGP_C57BL6NJ_T0072217.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59295662 59771275 + MGP_C57BL6NJ_P0072217 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0072218.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59295715 59309604 + MGP_C57BL6NJ_P0072218 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0072219.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59296792 59767396 + MGP_C57BL6NJ_P0072219 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0072220.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59297818 59527974 + MGP_C57BL6NJ_P0072220 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0072221.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59298857 59767842 + MGP_C57BL6NJ_P0072221 Pcdh7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072222.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59299608 59524119 + MGP_C57BL6NJ_P0072222 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0072223.1 MGP_C57BL6NJ_G0029989.1 mouse_genomes_project 5 59299904 59767499 + MGP_C57BL6NJ_P0072223 Pcdh7 protein_coding protein_coding MGP_C57BL6NJ_T0015616.1 MGP_C57BL6NJ_G0013661.1 mouse_genomes_project 5 161861806 161862194 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001999.1 MGP_C57BL6NJ_G0001891.1 mouse_genomes_project 5 141408874 141415702 - TEC TEC MGP_C57BL6NJ_T0073783.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117587039 117700302 - MGP_C57BL6NJ_P0073783 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073784.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117587039 117700112 - MGP_C57BL6NJ_P0073784 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073785.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117587044 117700302 - MGP_C57BL6NJ_P0073785 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073786.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117590036 117590855 - Ep400 protein_coding processed_transcript MGP_C57BL6NJ_T0073787.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117590200 117591474 - Ep400 protein_coding retained_intron MGP_C57BL6NJ_T0073788.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117610535 117615929 - Ep400 protein_coding retained_intron MGP_C57BL6NJ_T0073789.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117619723 117622895 - Ep400 protein_coding retained_intron MGP_C57BL6NJ_T0073790.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117621102 117631704 - MGP_C57BL6NJ_P0073790 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073791.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117664004 117700170 - MGP_C57BL6NJ_P0073791 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073792.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117664402 117699740 - MGP_C57BL6NJ_P0073792 Ep400 protein_coding protein_coding MGP_C57BL6NJ_T0073793.1 MGP_C57BL6NJ_G0030321.1 mouse_genomes_project 5 117684325 117700302 - Ep400 protein_coding processed_transcript MGP_C57BL6NJ_T0075016.1 MGP_C57BL6NJ_G0030539.1 mouse_genomes_project 5 134233410 134234805 - MGP_C57BL6NJ_P0075016 protein_coding protein_coding MGP_C57BL6NJ_T0076602.1 MGP_C57BL6NJ_G0030853.1 mouse_genomes_project 5 162759027 163139839 - MGP_C57BL6NJ_P0076602 Gm42906 protein_coding protein_coding MGP_C57BL6NJ_T0103208.1 MGP_C57BL6NJ_G0041002.1 mouse_genomes_project 5 98411170 98412845 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001958.1 MGP_C57BL6NJ_G0001851.1 mouse_genomes_project 5 132378622 132379154 + TEC TEC MGP_C57BL6NJ_T0075132.1 MGP_C57BL6NJ_G0030563.1 mouse_genomes_project 5 139080124 139096705 - MGP_C57BL6NJ_P0075132 Phkg1 protein_coding protein_coding MGP_C57BL6NJ_T0075133.1 MGP_C57BL6NJ_G0030563.1 mouse_genomes_project 5 139084932 139122766 - MGP_C57BL6NJ_P0075133 Phkg1 protein_coding protein_coding MGP_C57BL6NJ_T0075134.1 MGP_C57BL6NJ_G0030563.1 mouse_genomes_project 5 139084937 139087876 - Phkg1 protein_coding retained_intron MGP_C57BL6NJ_T0075135.1 MGP_C57BL6NJ_G0030563.1 mouse_genomes_project 5 139087647 139089766 - Phkg1 protein_coding processed_transcript MGP_C57BL6NJ_T0075136.1 MGP_C57BL6NJ_G0030563.1 mouse_genomes_project 5 139095129 139096669 - Phkg1 protein_coding retained_intron MGP_C57BL6NJ_T0075052.1 MGP_C57BL6NJ_G0030548.1 mouse_genomes_project 5 136836071 137523895 - MGP_C57BL6NJ_P0075052 Tmem132d protein_coding protein_coding MGP_C57BL6NJ_T0075053.1 MGP_C57BL6NJ_G0030548.1 mouse_genomes_project 5 137355261 137362336 - Tmem132d protein_coding processed_transcript MGP_C57BL6NJ_T0075054.1 MGP_C57BL6NJ_G0030548.1 mouse_genomes_project 5 137355366 137362274 - Tmem132d protein_coding processed_transcript MGP_C57BL6NJ_T0015249.1 MGP_C57BL6NJ_G0013294.1 mouse_genomes_project 5 8361912 8362381 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075345.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635538 144645766 + MGP_C57BL6NJ_P0075345 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075346.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635543 144644852 + MGP_C57BL6NJ_P0075346 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075347.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635543 144644852 + MGP_C57BL6NJ_P0075347 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075348.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635555 144644852 + MGP_C57BL6NJ_P0075348 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075349.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635562 144644331 + MGP_C57BL6NJ_P0075349 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075350.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635576 144637595 + MGP_C57BL6NJ_P0075350 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075351.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635694 144643763 + MGP_C57BL6NJ_P0075351 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0075352.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144635954 144640392 + Wbscr27 protein_coding processed_transcript MGP_C57BL6NJ_T0075353.1 MGP_C57BL6NJ_G0030597.1 mouse_genomes_project 5 144643590 144644361 + MGP_C57BL6NJ_P0075353 Wbscr27 protein_coding protein_coding MGP_C57BL6NJ_T0015486.1 MGP_C57BL6NJ_G0013531.1 mouse_genomes_project 5 109551295 109551871 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072389.1 MGP_C57BL6NJ_G0030019.1 mouse_genomes_project 5 68717392 68765213 + MGP_C57BL6NJ_P0072389 Nsun7 protein_coding protein_coding MGP_C57BL6NJ_T0072390.1 MGP_C57BL6NJ_G0030019.1 mouse_genomes_project 5 68717407 68766177 + MGP_C57BL6NJ_P0072390 Nsun7 protein_coding protein_coding MGP_C57BL6NJ_T0072391.1 MGP_C57BL6NJ_G0030019.1 mouse_genomes_project 5 68717513 68726294 + Nsun7 protein_coding retained_intron MGP_C57BL6NJ_T0072392.1 MGP_C57BL6NJ_G0030019.1 mouse_genomes_project 5 68717807 68766166 + MGP_C57BL6NJ_P0072392 Nsun7 protein_coding protein_coding MGP_C57BL6NJ_T0099471.1 MGP_C57BL6NJ_G0037528.1 mouse_genomes_project 5 105150453 105151192 - Gm16227 sense_intronic sense_intronic MGP_C57BL6NJ_T0075461.1 MGP_C57BL6NJ_G0030620.1 mouse_genomes_project 5 145556788 145593066 - MGP_C57BL6NJ_P0075461 Styxl1 protein_coding protein_coding MGP_C57BL6NJ_T0075462.1 MGP_C57BL6NJ_G0030620.1 mouse_genomes_project 5 145556818 145585040 - MGP_C57BL6NJ_P0075462 Styxl1 protein_coding protein_coding MGP_C57BL6NJ_T0075463.1 MGP_C57BL6NJ_G0030620.1 mouse_genomes_project 5 145568033 145593144 - MGP_C57BL6NJ_P0075463 Styxl1 protein_coding protein_coding MGP_C57BL6NJ_T0074851.1 MGP_C57BL6NJ_G0030515.1 mouse_genomes_project 5 132731939 132761041 - MGP_C57BL6NJ_P0074851 Vps37b protein_coding protein_coding MGP_C57BL6NJ_T0074852.1 MGP_C57BL6NJ_G0030515.1 mouse_genomes_project 5 132733434 132739021 - Vps37b protein_coding processed_transcript MGP_C57BL6NJ_T0074853.1 MGP_C57BL6NJ_G0030515.1 mouse_genomes_project 5 132756534 132761029 - Vps37b protein_coding processed_transcript MGP_C57BL6NJ_T0004946.1 MGP_C57BL6NJ_G0004262.1 mouse_genomes_project 5 122272808 122283888 - antisense antisense MGP_C57BL6NJ_T0100461.1 MGP_C57BL6NJ_G0038507.1 mouse_genomes_project 5 87782806 87782928 - Gm25806 snRNA snRNA MGP_C57BL6NJ_T0008240.1 MGP_C57BL6NJ_G0006723.1 mouse_genomes_project 5 23020293 23026876 + 2700038G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008241.1 MGP_C57BL6NJ_G0006723.1 mouse_genomes_project 5 23020297 23024352 + 2700038G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0002031.1 MGP_C57BL6NJ_G0001922.1 mouse_genomes_project 5 151869380 151870341 - TEC TEC MGP_C57BL6NJ_T0001601.1 MGP_C57BL6NJ_G0001500.1 mouse_genomes_project 5 15233512 15235003 + TEC TEC MGP_C57BL6NJ_T0076318.1 MGP_C57BL6NJ_G0030792.1 mouse_genomes_project 5 156105040 156114240 - MGP_C57BL6NJ_P0076318 Atp5j2 protein_coding protein_coding MGP_C57BL6NJ_T0076319.1 MGP_C57BL6NJ_G0030792.1 mouse_genomes_project 5 156105048 156113770 - MGP_C57BL6NJ_P0076319 Atp5j2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076320.1 MGP_C57BL6NJ_G0030792.1 mouse_genomes_project 5 156105051 156113770 - MGP_C57BL6NJ_P0076320 Atp5j2 protein_coding protein_coding MGP_C57BL6NJ_T0076321.1 MGP_C57BL6NJ_G0030792.1 mouse_genomes_project 5 156105728 156113689 - MGP_C57BL6NJ_P0076321 Atp5j2 protein_coding protein_coding MGP_C57BL6NJ_T0076322.1 MGP_C57BL6NJ_G0030792.1 mouse_genomes_project 5 156111605 156113706 - Atp5j2 protein_coding retained_intron MGP_C57BL6NJ_T0074294.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125045221 125056160 - MGP_C57BL6NJ_P0074294 Rfc5 protein_coding protein_coding MGP_C57BL6NJ_T0074295.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125045517 125056135 - Rfc5 protein_coding retained_intron MGP_C57BL6NJ_T0074296.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125046729 125047964 - Rfc5 protein_coding retained_intron MGP_C57BL6NJ_T0074297.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125046953 125047329 - Rfc5 protein_coding retained_intron MGP_C57BL6NJ_T0074298.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125048828 125053944 - Rfc5 protein_coding retained_intron MGP_C57BL6NJ_T0074299.1 MGP_C57BL6NJ_G0030418.1 mouse_genomes_project 5 125053393 125056158 - MGP_C57BL6NJ_P0074299 Rfc5 protein_coding protein_coding MGP_C57BL6NJ_T0075818.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148321359 148329787 + MGP_C57BL6NJ_P0075818 Ap4m1 protein_coding protein_coding MGP_C57BL6NJ_T0075819.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148321362 148324371 + MGP_C57BL6NJ_P0075819 Ap4m1 protein_coding protein_coding MGP_C57BL6NJ_T0075820.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148321404 148323730 + Ap4m1 protein_coding retained_intron MGP_C57BL6NJ_T0075821.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148321425 148328039 + MGP_C57BL6NJ_P0075821 Ap4m1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075822.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148321939 148324302 + Ap4m1 protein_coding retained_intron MGP_C57BL6NJ_T0075823.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148324143 148326558 + Ap4m1 protein_coding retained_intron MGP_C57BL6NJ_T0075824.1 MGP_C57BL6NJ_G0030687.1 mouse_genomes_project 5 148325926 148328045 + Ap4m1 protein_coding retained_intron MGP_C57BL6NJ_T0015479.1 MGP_C57BL6NJ_G0013524.1 mouse_genomes_project 5 107327010 107327812 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008435.1 MGP_C57BL6NJ_G0006869.1 mouse_genomes_project 5 112827944 112829751 + Gm42916 lincRNA lincRNA MGP_C57BL6NJ_T0015460.1 MGP_C57BL6NJ_G0013505.1 mouse_genomes_project 5 96585577 96586457 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002010.1 MGP_C57BL6NJ_G0001902.1 mouse_genomes_project 5 142254347 142254635 + TEC TEC MGP_C57BL6NJ_T0072152.1 MGP_C57BL6NJ_G0029978.1 mouse_genomes_project 5 53771662 53802088 - MGP_C57BL6NJ_P0072152 Sepsecs protein_coding protein_coding MGP_C57BL6NJ_T0072153.1 MGP_C57BL6NJ_G0029978.1 mouse_genomes_project 5 53771662 53802088 - MGP_C57BL6NJ_P0072153 Sepsecs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072154.1 MGP_C57BL6NJ_G0029978.1 mouse_genomes_project 5 53772751 53798439 - MGP_C57BL6NJ_P0072154 Sepsecs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072155.1 MGP_C57BL6NJ_G0029978.1 mouse_genomes_project 5 53778215 53780056 - Sepsecs protein_coding retained_intron MGP_C57BL6NJ_T0072156.1 MGP_C57BL6NJ_G0029978.1 mouse_genomes_project 5 53788781 53801995 - MGP_C57BL6NJ_P0072156 Sepsecs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071293.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30947046 30972940 - Gtf3c2 protein_coding retained_intron MGP_C57BL6NJ_T0071294.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30947046 30972952 - MGP_C57BL6NJ_P0071294 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0071295.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30947562 30972925 - MGP_C57BL6NJ_P0071295 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0071296.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30948485 30950423 - Gtf3c2 protein_coding retained_intron MGP_C57BL6NJ_T0071297.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30950536 30958072 - Gtf3c2 protein_coding retained_intron MGP_C57BL6NJ_T0071298.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30959070 30972717 - Gtf3c2 protein_coding retained_intron MGP_C57BL6NJ_T0071299.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30965510 30972719 - Gtf3c2 protein_coding retained_intron MGP_C57BL6NJ_T0071300.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30965830 30967318 - MGP_C57BL6NJ_P0071300 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0071301.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30966207 30972719 - MGP_C57BL6NJ_P0071301 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0071302.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30966620 30972657 - MGP_C57BL6NJ_P0071302 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0071303.1 MGP_C57BL6NJ_G0029844.1 mouse_genomes_project 5 30966737 30967638 - MGP_C57BL6NJ_P0071303 Gtf3c2 protein_coding protein_coding MGP_C57BL6NJ_T0001697.1 MGP_C57BL6NJ_G0001593.1 mouse_genomes_project 5 49716976 49719219 - TEC TEC MGP_C57BL6NJ_T0018682.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163075013 163089517 + processed_transcript retained_intron MGP_C57BL6NJ_T0018683.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163075047 163104871 + processed_transcript lincRNA MGP_C57BL6NJ_T0018684.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163075056 163125809 + processed_transcript lincRNA MGP_C57BL6NJ_T0018685.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163110734 163125602 + processed_transcript lincRNA MGP_C57BL6NJ_T0018686.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163117094 163143739 + processed_transcript lincRNA MGP_C57BL6NJ_T0018687.1 MGP_C57BL6NJ_G0016014.1 mouse_genomes_project 5 163117116 163142149 + processed_transcript lincRNA MGP_C57BL6NJ_T0001847.1 MGP_C57BL6NJ_G0001740.1 mouse_genomes_project 5 95135689 95138336 + TEC TEC MGP_C57BL6NJ_T0015433.1 MGP_C57BL6NJ_G0013478.1 mouse_genomes_project 5 87367947 87368815 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015449.1 MGP_C57BL6NJ_G0013494.1 mouse_genomes_project 5 93055635 93056300 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074303.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125481989 125578868 + MGP_C57BL6NJ_P0074303 Nos1 protein_coding protein_coding MGP_C57BL6NJ_T0074304.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125482012 125578498 + Nos1 protein_coding processed_transcript MGP_C57BL6NJ_T0074305.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125550389 125690232 + MGP_C57BL6NJ_P0074305 Nos1 protein_coding protein_coding MGP_C57BL6NJ_T0074306.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125550725 125683637 + MGP_C57BL6NJ_P0074306 Nos1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074307.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125578525 125683183 + MGP_C57BL6NJ_P0074307 Nos1 protein_coding protein_coding MGP_C57BL6NJ_T0074308.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125578530 125683087 + MGP_C57BL6NJ_P0074308 Nos1 protein_coding protein_coding MGP_C57BL6NJ_T0074309.1 MGP_C57BL6NJ_G0030420.1 mouse_genomes_project 5 125642761 125652182 + Nos1 protein_coding processed_transcript MGP_C57BL6NJ_T0100430.1 MGP_C57BL6NJ_G0038476.1 mouse_genomes_project 5 24839756 24839927 + Gm22656 snRNA snRNA MGP_C57BL6NJ_T0001630.1 MGP_C57BL6NJ_G0001527.1 mouse_genomes_project 5 31430154 31430785 + TEC TEC MGP_C57BL6NJ_T0008298.1 MGP_C57BL6NJ_G0006760.1 mouse_genomes_project 5 44013300 44015479 - Gm43020 lincRNA lincRNA MGP_C57BL6NJ_T0001703.1 MGP_C57BL6NJ_G0001598.1 mouse_genomes_project 5 49873907 49875856 - TEC TEC MGP_C57BL6NJ_T0008260.1 MGP_C57BL6NJ_G0006736.1 mouse_genomes_project 5 29788231 29792621 + Gm4961 lincRNA lincRNA MGP_C57BL6NJ_T0008517.1 MGP_C57BL6NJ_G0006921.1 mouse_genomes_project 5 126962891 126969121 + 1700081H04Rik lincRNA lincRNA MGP_C57BL6NJ_T0002002.1 MGP_C57BL6NJ_G0001894.1 mouse_genomes_project 5 141615256 141616586 - TEC TEC MGP_C57BL6NJ_T0008379.1 MGP_C57BL6NJ_G0006827.1 mouse_genomes_project 5 95687735 95689906 + lincRNA lincRNA MGP_C57BL6NJ_T0001902.1 MGP_C57BL6NJ_G0001795.1 mouse_genomes_project 5 120232491 120233055 + TEC TEC MGP_C57BL6NJ_T0071113.1 MGP_C57BL6NJ_G0029813.1 mouse_genomes_project 5 29805432 29818679 + MGP_C57BL6NJ_P0071113 Gareml protein_coding protein_coding MGP_C57BL6NJ_T0075967.1 MGP_C57BL6NJ_G0030716.1 mouse_genomes_project 5 149720378 149725028 + MGP_C57BL6NJ_P0075967 Gper1 protein_coding protein_coding MGP_C57BL6NJ_T0075968.1 MGP_C57BL6NJ_G0030716.1 mouse_genomes_project 5 149720507 149723117 + Gper1 protein_coding processed_transcript MGP_C57BL6NJ_T0071432.1 MGP_C57BL6NJ_G0029861.1 mouse_genomes_project 5 31473187 31489253 - Rbks protein_coding processed_transcript MGP_C57BL6NJ_T0071433.1 MGP_C57BL6NJ_G0029861.1 mouse_genomes_project 5 31473187 31545386 - MGP_C57BL6NJ_P0071433 Rbks protein_coding protein_coding MGP_C57BL6NJ_T0071436.1 MGP_C57BL6NJ_G0029861.1 mouse_genomes_project 5 31508759 31534727 - Rbks protein_coding processed_transcript MGP_C57BL6NJ_T0073063.1 MGP_C57BL6NJ_G0030169.1 mouse_genomes_project 5 96797434 96814727 - Rchy1 protein_coding processed_transcript MGP_C57BL6NJ_T0073064.1 MGP_C57BL6NJ_G0030169.1 mouse_genomes_project 5 96797434 96815239 - MGP_C57BL6NJ_P0073064 Rchy1 protein_coding protein_coding MGP_C57BL6NJ_T0073065.1 MGP_C57BL6NJ_G0030169.1 mouse_genomes_project 5 96797531 96814906 - MGP_C57BL6NJ_P0073065 Rchy1 protein_coding protein_coding MGP_C57BL6NJ_T0073066.1 MGP_C57BL6NJ_G0030169.1 mouse_genomes_project 5 96800382 96802283 - Rchy1 protein_coding retained_intron MGP_C57BL6NJ_T0073067.1 MGP_C57BL6NJ_G0030169.1 mouse_genomes_project 5 96813851 96814897 - Rchy1 protein_coding retained_intron MGP_C57BL6NJ_T0004986.1 MGP_C57BL6NJ_G0004290.1 mouse_genomes_project 5 131969642 131982487 - Gm15860 antisense antisense MGP_C57BL6NJ_T0004987.1 MGP_C57BL6NJ_G0004290.1 mouse_genomes_project 5 131971248 131982589 - Gm15860 antisense antisense MGP_C57BL6NJ_T0004988.1 MGP_C57BL6NJ_G0004290.1 mouse_genomes_project 5 131971384 131980051 - Gm15860 antisense antisense MGP_C57BL6NJ_T0071758.1 MGP_C57BL6NJ_G0029910.1 mouse_genomes_project 5 35704061 35720103 - MGP_C57BL6NJ_P0071758 protein_coding protein_coding MGP_C57BL6NJ_T0100490.1 MGP_C57BL6NJ_G0038536.1 mouse_genomes_project 5 133485177 133485275 - Gm24854 snRNA snRNA MGP_C57BL6NJ_T0008572.1 MGP_C57BL6NJ_G0006955.1 mouse_genomes_project 5 137535106 137539463 + Gm42495 lincRNA lincRNA MGP_C57BL6NJ_T0015405.1 MGP_C57BL6NJ_G0013450.1 mouse_genomes_project 5 70901217 70901542 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015426.1 MGP_C57BL6NJ_G0013471.1 mouse_genomes_project 5 80668445 80668728 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098880.1 MGP_C57BL6NJ_G0036944.1 mouse_genomes_project 5 130216060 130216476 - pseudogene pseudogene MGP_C57BL6NJ_T0073455.1 MGP_C57BL6NJ_G0030256.1 mouse_genomes_project 5 111890659 111987725 + MGP_C57BL6NJ_P0073455 Lrrc8c protein_coding protein_coding MGP_C57BL6NJ_T0073456.1 MGP_C57BL6NJ_G0030256.1 mouse_genomes_project 5 111890687 111954318 + MGP_C57BL6NJ_P0073456 Lrrc8c protein_coding protein_coding MGP_C57BL6NJ_T0073457.1 MGP_C57BL6NJ_G0030256.1 mouse_genomes_project 5 111890744 111916047 + Lrrc8c protein_coding retained_intron MGP_C57BL6NJ_T0073458.1 MGP_C57BL6NJ_G0030256.1 mouse_genomes_project 5 111930297 111981597 + MGP_C57BL6NJ_P0073458 Lrrc8c protein_coding protein_coding MGP_C57BL6NJ_T0001747.1 MGP_C57BL6NJ_G0001642.1 mouse_genomes_project 5 59540157 59541512 + TEC TEC MGP_C57BL6NJ_T0074473.1 MGP_C57BL6NJ_G0030460.1 mouse_genomes_project 5 129768137 129801251 - MGP_C57BL6NJ_P0074473 Gm42878 protein_coding protein_coding MGP_C57BL6NJ_T0074474.1 MGP_C57BL6NJ_G0030460.1 mouse_genomes_project 5 129768137 129801251 - MGP_C57BL6NJ_P0074474 Gm42878 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001772.1 MGP_C57BL6NJ_G0001666.1 mouse_genomes_project 5 67855484 67859677 - TEC TEC MGP_C57BL6NJ_T0100501.1 MGP_C57BL6NJ_G0038547.1 mouse_genomes_project 5 162200231 162200372 - Gm25284 snRNA snRNA MGP_C57BL6NJ_T0015510.1 MGP_C57BL6NJ_G0013555.1 mouse_genomes_project 5 115705089 115705807 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075792.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261666 148281568 + MGP_C57BL6NJ_P0075792 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075793.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261679 148281620 + MGP_C57BL6NJ_P0075793 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075794.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261700 148281569 + MGP_C57BL6NJ_P0075794 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075795.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261700 148281620 + MGP_C57BL6NJ_P0075795 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075796.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261743 148280602 + MGP_C57BL6NJ_P0075796 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075797.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261745 148272908 + MGP_C57BL6NJ_P0075797 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0075798.1 MGP_C57BL6NJ_G0030683.1 mouse_genomes_project 5 148261804 148281571 + MGP_C57BL6NJ_P0075798 Zscan21 protein_coding protein_coding MGP_C57BL6NJ_T0074608.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130866121 130877739 + Arpc3 protein_coding retained_intron MGP_C57BL6NJ_T0074609.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130866165 130872571 + Arpc3 protein_coding retained_intron MGP_C57BL6NJ_T0074610.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130866191 130881344 + MGP_C57BL6NJ_P0074610 Arpc3 protein_coding protein_coding MGP_C57BL6NJ_T0074611.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130872244 130892360 + MGP_C57BL6NJ_P0074611 Arpc3 protein_coding protein_coding MGP_C57BL6NJ_T0074612.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130875683 130881559 + MGP_C57BL6NJ_P0074612 Arpc3 protein_coding protein_coding MGP_C57BL6NJ_T0074613.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130875810 130881550 + MGP_C57BL6NJ_P0074613 Arpc3 protein_coding protein_coding MGP_C57BL6NJ_T0074614.1 MGP_C57BL6NJ_G0030480.1 mouse_genomes_project 5 130878826 130880194 + Arpc3 protein_coding retained_intron MGP_C57BL6NJ_T0076031.1 MGP_C57BL6NJ_G0030734.1 mouse_genomes_project 5 151117254 151145858 - MGP_C57BL6NJ_P0076031 Ttyh3 protein_coding protein_coding MGP_C57BL6NJ_T0076032.1 MGP_C57BL6NJ_G0030734.1 mouse_genomes_project 5 151120205 151124340 - MGP_C57BL6NJ_P0076032 Ttyh3 protein_coding protein_coding MGP_C57BL6NJ_T0076033.1 MGP_C57BL6NJ_G0030734.1 mouse_genomes_project 5 151128189 151128661 - Ttyh3 protein_coding retained_intron MGP_C57BL6NJ_T0076034.1 MGP_C57BL6NJ_G0030734.1 mouse_genomes_project 5 151128570 151133500 - Ttyh3 protein_coding retained_intron MGP_C57BL6NJ_T0076035.1 MGP_C57BL6NJ_G0030734.1 mouse_genomes_project 5 151145501 151146028 - Ttyh3 protein_coding processed_transcript MGP_C57BL6NJ_T0001598.1 MGP_C57BL6NJ_G0001497.1 mouse_genomes_project 5 14389422 14390603 + TEC TEC MGP_C57BL6NJ_T0103219.1 MGP_C57BL6NJ_G0041013.1 mouse_genomes_project 5 153215178 153215689 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010981.1 MGP_C57BL6NJ_G0009066.1 mouse_genomes_project 5 147555109 147555224 - Mir6418 miRNA miRNA MGP_C57BL6NJ_T0075938.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149551420 149593282 - Adap1 protein_coding processed_transcript MGP_C57BL6NJ_T0075939.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149551420 149614309 - MGP_C57BL6NJ_P0075939 Adap1 protein_coding protein_coding MGP_C57BL6NJ_T0075940.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149552320 149590119 - Adap1 protein_coding processed_transcript MGP_C57BL6NJ_T0075941.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149552402 149593254 - Adap1 protein_coding processed_transcript MGP_C57BL6NJ_T0075942.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149552474 149554186 - Adap1 protein_coding retained_intron MGP_C57BL6NJ_T0075943.1 MGP_C57BL6NJ_G0030710.1 mouse_genomes_project 5 149563775 149594772 - Adap1 protein_coding retained_intron MGP_C57BL6NJ_T0004792.1 MGP_C57BL6NJ_G0004146.1 mouse_genomes_project 5 5482727 5500199 - Gm15731 antisense antisense MGP_C57BL6NJ_T0005060.1 MGP_C57BL6NJ_G0004342.1 mouse_genomes_project 5 162214253 162220386 - Gm42529 antisense antisense MGP_C57BL6NJ_T0004924.1 MGP_C57BL6NJ_G0004244.1 mouse_genomes_project 5 112203902 112208124 - Lrrc8dos antisense antisense MGP_C57BL6NJ_T0015410.1 MGP_C57BL6NJ_G0013455.1 mouse_genomes_project 5 75066581 75067053 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008490.1 MGP_C57BL6NJ_G0006902.1 mouse_genomes_project 5 121837163 121839891 + Gm13790 lincRNA lincRNA MGP_C57BL6NJ_T0101742.1 MGP_C57BL6NJ_G0039788.1 mouse_genomes_project 5 71207168 71207295 - Gm23605 snoRNA snoRNA MGP_C57BL6NJ_T0076355.1 MGP_C57BL6NJ_G0030809.1 mouse_genomes_project 5 157317942 157323167 - MGP_C57BL6NJ_P0076355 Gm6370 protein_coding protein_coding MGP_C57BL6NJ_T0076357.1 MGP_C57BL6NJ_G0030809.1 mouse_genomes_project 5 157318076 157323165 - MGP_C57BL6NJ_P0076357 Gm6370 protein_coding protein_coding MGP_C57BL6NJ_T0008393.1 MGP_C57BL6NJ_G0006841.1 mouse_genomes_project 5 102791835 102813920 + Gm33969 lincRNA lincRNA MGP_C57BL6NJ_T0008415.1 MGP_C57BL6NJ_G0006855.1 mouse_genomes_project 5 107532150 107540556 - Gm43271 lincRNA lincRNA MGP_C57BL6NJ_T0074861.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857194 132859959 + Ogfod2 protein_coding retained_intron MGP_C57BL6NJ_T0074862.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857198 132859380 + MGP_C57BL6NJ_P0074862 Ogfod2 protein_coding protein_coding MGP_C57BL6NJ_T0074863.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857211 132859852 + MGP_C57BL6NJ_P0074863 Ogfod2 protein_coding protein_coding MGP_C57BL6NJ_T0074864.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857213 132859248 + Ogfod2 protein_coding retained_intron MGP_C57BL6NJ_T0074865.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857213 132859336 + MGP_C57BL6NJ_P0074865 Ogfod2 protein_coding protein_coding MGP_C57BL6NJ_T0074866.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857230 132859640 + MGP_C57BL6NJ_P0074866 Ogfod2 protein_coding protein_coding MGP_C57BL6NJ_T0074867.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857304 132859841 + MGP_C57BL6NJ_P0074867 Ogfod2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074868.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132857688 132859091 + Ogfod2 protein_coding retained_intron MGP_C57BL6NJ_T0074869.1 MGP_C57BL6NJ_G0030517.1 mouse_genomes_project 5 132858176 132859756 + Ogfod2 protein_coding retained_intron MGP_C57BL6NJ_T0001771.1 MGP_C57BL6NJ_G0001665.1 mouse_genomes_project 5 67816382 67817302 + TEC TEC MGP_C57BL6NJ_T0008428.1 MGP_C57BL6NJ_G0006863.1 mouse_genomes_project 5 111772647 111779629 + Gm26519 lincRNA lincRNA MGP_C57BL6NJ_T0008359.1 MGP_C57BL6NJ_G0006811.1 mouse_genomes_project 5 79280324 79295203 + Gm32780 lincRNA lincRNA MGP_C57BL6NJ_T0015246.1 MGP_C57BL6NJ_G0013291.1 mouse_genomes_project 5 7425778 7426742 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076369.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157370044 157444030 + MGP_C57BL6NJ_P0076369 Cdk8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076370.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157370102 157433386 + MGP_C57BL6NJ_P0076370 Cdk8 protein_coding protein_coding MGP_C57BL6NJ_T0076371.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157370199 157410418 + MGP_C57BL6NJ_P0076371 Cdk8 protein_coding protein_coding MGP_C57BL6NJ_T0076372.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157370507 157443397 + MGP_C57BL6NJ_P0076372 Cdk8 protein_coding protein_coding MGP_C57BL6NJ_T0076373.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157396877 157399084 + Cdk8 protein_coding retained_intron MGP_C57BL6NJ_T0076374.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157426777 157432810 + Cdk8 protein_coding processed_transcript MGP_C57BL6NJ_T0076375.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157435551 157443975 + Cdk8 protein_coding retained_intron MGP_C57BL6NJ_T0076376.1 MGP_C57BL6NJ_G0030812.1 mouse_genomes_project 5 157437006 157440154 + Cdk8 protein_coding retained_intron MGP_C57BL6NJ_T0015373.1 MGP_C57BL6NJ_G0013418.1 mouse_genomes_project 5 58769126 58769862 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070470.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891134 934556 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0070471.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891134 934631 + MGP_C57BL6NJ_P0070471 Krit1 protein_coding protein_coding MGP_C57BL6NJ_T0070472.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891135 899665 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0070473.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891139 934631 + MGP_C57BL6NJ_P0070473 Krit1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070474.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891140 938836 + MGP_C57BL6NJ_P0070474 Krit1 protein_coding protein_coding MGP_C57BL6NJ_T0070475.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 891355 937575 + MGP_C57BL6NJ_P0070475 Krit1 protein_coding protein_coding MGP_C57BL6NJ_T0070476.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 892190 897658 + MGP_C57BL6NJ_P0070476 Krit1 protein_coding protein_coding MGP_C57BL6NJ_T0070477.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 893243 899458 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0070478.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 905835 911626 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0070479.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 908748 913240 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0070480.1 MGP_C57BL6NJ_G0029694.1 mouse_genomes_project 5 916445 918359 + Krit1 protein_coding retained_intron MGP_C57BL6NJ_T0008489.1 MGP_C57BL6NJ_G0006901.1 mouse_genomes_project 5 121138361 121139941 - Gm42797 lincRNA lincRNA MGP_C57BL6NJ_T0001988.1 MGP_C57BL6NJ_G0001880.1 mouse_genomes_project 5 141001346 141003097 - TEC TEC MGP_C57BL6NJ_T0004828.1 MGP_C57BL6NJ_G0004176.1 mouse_genomes_project 5 34819338 34846664 - Gm42560 antisense antisense MGP_C57BL6NJ_T0015253.1 MGP_C57BL6NJ_G0013298.1 mouse_genomes_project 5 11386426 11388285 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004843.1 MGP_C57BL6NJ_G0004187.1 mouse_genomes_project 5 44594594 44595265 - Gm16015 antisense antisense MGP_C57BL6NJ_T0076441.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158843446 159036006 - MGP_C57BL6NJ_P0076441 Flt1 protein_coding protein_coding MGP_C57BL6NJ_T0076442.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158893009 158933627 - Flt1 protein_coding processed_transcript MGP_C57BL6NJ_T0076443.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158910146 158910633 - Flt1 protein_coding processed_transcript MGP_C57BL6NJ_T0076444.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158934367 159035983 - MGP_C57BL6NJ_P0076444 Flt1 protein_coding protein_coding MGP_C57BL6NJ_T0076445.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158943983 158946013 - Flt1 protein_coding retained_intron MGP_C57BL6NJ_T0076446.1 MGP_C57BL6NJ_G0030828.1 mouse_genomes_project 5 158953474 159035983 - Flt1 protein_coding processed_transcript MGP_C57BL6NJ_T0001870.1 MGP_C57BL6NJ_G0001763.1 mouse_genomes_project 5 107655434 107657018 + TEC TEC MGP_C57BL6NJ_T0001995.1 MGP_C57BL6NJ_G0001887.1 mouse_genomes_project 5 141324679 141325427 - TEC TEC MGP_C57BL6NJ_T0074003.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121542012 121624215 + MGP_C57BL6NJ_P0074003 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074004.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121570843 121625556 + MGP_C57BL6NJ_P0074004 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074005.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121570948 121623994 + MGP_C57BL6NJ_P0074005 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074006.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121617791 121625556 + Myo1h protein_coding retained_intron MGP_C57BL6NJ_T0074007.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121617839 121624300 + Myo1h protein_coding retained_intron MGP_C57BL6NJ_T0074008.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121617839 121624300 + MGP_C57BL6NJ_P0074008 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074009.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121617839 121624300 + MGP_C57BL6NJ_P0074009 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074010.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121617839 121624300 + MGP_C57BL6NJ_P0074010 Myo1h protein_coding protein_coding MGP_C57BL6NJ_T0074011.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121618382 121620712 + Myo1h protein_coding retained_intron MGP_C57BL6NJ_T0074012.1 MGP_C57BL6NJ_G0030365.1 mouse_genomes_project 5 121624394 121626337 + Myo1h protein_coding processed_transcript MGP_C57BL6NJ_T0073205.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 101760563 102194311 + MGP_C57BL6NJ_P0073205 Fras1 protein_coding protein_coding MGP_C57BL6NJ_T0073206.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 101760814 101933548 + Fras1 protein_coding retained_intron MGP_C57BL6NJ_T0073207.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 101761043 101775196 + Fras1 protein_coding retained_intron MGP_C57BL6NJ_T0073208.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 102013851 102036853 + Fras1 protein_coding processed_transcript MGP_C57BL6NJ_T0073209.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 102014068 102036965 + Fras1 protein_coding processed_transcript MGP_C57BL6NJ_T0073210.1 MGP_C57BL6NJ_G0030196.1 mouse_genomes_project 5 102030205 102036853 + Fras1 protein_coding processed_transcript MGP_C57BL6NJ_T0074952.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133386861 133395716 - MGP_C57BL6NJ_P0074952 Eif2b1 protein_coding protein_coding MGP_C57BL6NJ_T0074953.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133388399 133391565 - Eif2b1 protein_coding retained_intron MGP_C57BL6NJ_T0074954.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133389729 133395646 - MGP_C57BL6NJ_P0074954 Eif2b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074955.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133390379 133395660 - MGP_C57BL6NJ_P0074955 Eif2b1 protein_coding protein_coding MGP_C57BL6NJ_T0074956.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133393403 133395577 - MGP_C57BL6NJ_P0074956 Eif2b1 protein_coding protein_coding MGP_C57BL6NJ_T0074957.1 MGP_C57BL6NJ_G0030530.1 mouse_genomes_project 5 133395103 133395617 - MGP_C57BL6NJ_P0074957 Eif2b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011850.1 MGP_C57BL6NJ_G0009935.1 mouse_genomes_project 5 6547820 6547962 - Gm27941 misc_RNA misc_RNA MGP_C57BL6NJ_T0074710.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131638343 131694752 + Tmem120b protein_coding processed_transcript MGP_C57BL6NJ_T0074711.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649237 131695819 + MGP_C57BL6NJ_P0074711 Tmem120b protein_coding protein_coding MGP_C57BL6NJ_T0074712.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649287 131693389 + MGP_C57BL6NJ_P0074712 Tmem120b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074713.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649288 131695079 + MGP_C57BL6NJ_P0074713 Tmem120b protein_coding protein_coding MGP_C57BL6NJ_T0074714.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649303 131693407 + MGP_C57BL6NJ_P0074714 Tmem120b protein_coding protein_coding MGP_C57BL6NJ_T0074715.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649313 131680116 + Tmem120b protein_coding retained_intron MGP_C57BL6NJ_T0074716.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131649332 131675897 + Tmem120b protein_coding retained_intron MGP_C57BL6NJ_T0074717.1 MGP_C57BL6NJ_G0030492.1 mouse_genomes_project 5 131675429 131693991 + Tmem120b protein_coding retained_intron MGP_C57BL6NJ_T0001959.1 MGP_C57BL6NJ_G0001852.1 mouse_genomes_project 5 132731946 132733450 + TEC TEC MGP_C57BL6NJ_T0001616.1 MGP_C57BL6NJ_G0001514.1 mouse_genomes_project 5 26624130 26628472 + TEC TEC MGP_C57BL6NJ_T0072779.1 MGP_C57BL6NJ_G0030089.1 mouse_genomes_project 5 80659037 80711479 + MGP_C57BL6NJ_P0072779 Polr2b protein_coding protein_coding MGP_C57BL6NJ_T0072780.1 MGP_C57BL6NJ_G0030089.1 mouse_genomes_project 5 80659381 80662162 + Polr2b protein_coding retained_intron MGP_C57BL6NJ_T0072781.1 MGP_C57BL6NJ_G0030089.1 mouse_genomes_project 5 80688051 80689270 + Polr2b protein_coding retained_intron MGP_C57BL6NJ_T0072782.1 MGP_C57BL6NJ_G0030089.1 mouse_genomes_project 5 80702527 80705084 + Polr2b protein_coding retained_intron MGP_C57BL6NJ_T0101771.1 MGP_C57BL6NJ_G0039817.1 mouse_genomes_project 5 160656290 160656388 + Gm23362 snoRNA snoRNA MGP_C57BL6NJ_T0074102.1 MGP_C57BL6NJ_G0030383.1 mouse_genomes_project 5 122305760 122314778 + MGP_C57BL6NJ_P0074102 2210016L21Rik protein_coding protein_coding MGP_C57BL6NJ_T0074103.1 MGP_C57BL6NJ_G0030383.1 mouse_genomes_project 5 122305806 122311875 + 2210016L21Rik protein_coding retained_intron MGP_C57BL6NJ_T0074104.1 MGP_C57BL6NJ_G0030383.1 mouse_genomes_project 5 122305812 122311841 + MGP_C57BL6NJ_P0074104 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074105.1 MGP_C57BL6NJ_G0030383.1 mouse_genomes_project 5 122305833 122311212 + 2210016L21Rik protein_coding retained_intron MGP_C57BL6NJ_T0074106.1 MGP_C57BL6NJ_G0030383.1 mouse_genomes_project 5 122310799 122312779 + MGP_C57BL6NJ_P0074106 2210016L21Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099112.1 MGP_C57BL6NJ_G0037176.1 mouse_genomes_project 5 37350242 37350345 - Gm25551 rRNA rRNA MGP_C57BL6NJ_T0072662.1 MGP_C57BL6NJ_G0030067.1 mouse_genomes_project 5 78214628 78216921 + MGP_C57BL6NJ_P0072662 Gsx2 protein_coding protein_coding MGP_C57BL6NJ_T0072663.1 MGP_C57BL6NJ_G0030067.1 mouse_genomes_project 5 78214630 78216654 + MGP_C57BL6NJ_P0072663 Gsx2 protein_coding protein_coding MGP_C57BL6NJ_T0075383.1 MGP_C57BL6NJ_G0030603.1 mouse_genomes_project 5 144784942 144786603 + MGP_C57BL6NJ_P0075383 Dnajc30 protein_coding protein_coding MGP_C57BL6NJ_T0008342.1 MGP_C57BL6NJ_G0006798.1 mouse_genomes_project 5 76273905 76291004 - 1700025M24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008343.1 MGP_C57BL6NJ_G0006798.1 mouse_genomes_project 5 76273905 76290992 - 1700025M24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008344.1 MGP_C57BL6NJ_G0006798.1 mouse_genomes_project 5 76273923 76290998 - 1700025M24Rik lincRNA lincRNA MGP_C57BL6NJ_T0015303.1 MGP_C57BL6NJ_G0013348.1 mouse_genomes_project 5 26429064 26430746 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100485.1 MGP_C57BL6NJ_G0038531.1 mouse_genomes_project 5 125896959 125897066 - Gm26411 snRNA snRNA MGP_C57BL6NJ_T0008346.1 MGP_C57BL6NJ_G0006800.1 mouse_genomes_project 5 77012497 77014493 + C78283 lincRNA lincRNA MGP_C57BL6NJ_T0101749.1 MGP_C57BL6NJ_G0039795.1 mouse_genomes_project 5 92380277 92380400 - Gm24314 snoRNA snoRNA MGP_C57BL6NJ_T0076196.1 MGP_C57BL6NJ_G0030768.1 mouse_genomes_project 5 154629564 154669036 + MGP_C57BL6NJ_P0076196 Eif2ak1 protein_coding protein_coding MGP_C57BL6NJ_T0076197.1 MGP_C57BL6NJ_G0030768.1 mouse_genomes_project 5 154629607 154645279 + Eif2ak1 protein_coding retained_intron MGP_C57BL6NJ_T0076198.1 MGP_C57BL6NJ_G0030768.1 mouse_genomes_project 5 154629723 154637090 + Eif2ak1 protein_coding retained_intron MGP_C57BL6NJ_T0015266.1 MGP_C57BL6NJ_G0013311.1 mouse_genomes_project 5 18322394 18324063 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008334.1 MGP_C57BL6NJ_G0006791.1 mouse_genomes_project 5 66881540 66883609 - Gm42564 lincRNA lincRNA MGP_C57BL6NJ_T0073442.1 MGP_C57BL6NJ_G0030250.1 mouse_genomes_project 5 111176114 111245700 - Gbp8 protein_coding retained_intron MGP_C57BL6NJ_T0073443.1 MGP_C57BL6NJ_G0030250.1 mouse_genomes_project 5 111176114 111185532 - Gbp8 protein_coding processed_transcript MGP_C57BL6NJ_T0073444.1 MGP_C57BL6NJ_G0030250.1 mouse_genomes_project 5 111176117 111344951 - MGP_C57BL6NJ_P0073444 Gbp8 protein_coding protein_coding MGP_C57BL6NJ_T0073445.1 MGP_C57BL6NJ_G0030250.1 mouse_genomes_project 5 111176891 111243191 - MGP_C57BL6NJ_P0073445 Gbp8 protein_coding protein_coding MGP_C57BL6NJ_T0100497.1 MGP_C57BL6NJ_G0038543.1 mouse_genomes_project 5 148531977 148532084 + Gm25525 snRNA snRNA MGP_C57BL6NJ_T0072479.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262083 72280326 + MGP_C57BL6NJ_P0072479 Guf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072480.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262113 72271863 + Guf1 protein_coding retained_intron MGP_C57BL6NJ_T0072481.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262113 72273844 + MGP_C57BL6NJ_P0072481 Guf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072482.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262121 72281700 + MGP_C57BL6NJ_P0072482 Guf1 protein_coding protein_coding MGP_C57BL6NJ_T0072483.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262148 72280327 + MGP_C57BL6NJ_P0072483 Guf1 protein_coding protein_coding MGP_C57BL6NJ_T0072484.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262233 72274700 + MGP_C57BL6NJ_P0072484 Guf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072485.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72262254 72280371 + MGP_C57BL6NJ_P0072485 Guf1 protein_coding protein_coding MGP_C57BL6NJ_T0072486.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72271877 72284569 + Guf1 protein_coding retained_intron MGP_C57BL6NJ_T0072487.1 MGP_C57BL6NJ_G0030034.1 mouse_genomes_project 5 72277165 72280079 + Guf1 protein_coding retained_intron MGP_C57BL6NJ_T0076152.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154069672 154082440 - MGP_C57BL6NJ_P0076152 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076153.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154069673 154082404 - MGP_C57BL6NJ_P0076153 Zdhhc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076154.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154069680 154079538 - MGP_C57BL6NJ_P0076154 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076155.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154073565 154082395 - Zdhhc4 protein_coding processed_transcript MGP_C57BL6NJ_T0076156.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154073620 154082407 - MGP_C57BL6NJ_P0076156 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076157.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154073626 154082398 - MGP_C57BL6NJ_P0076157 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076158.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154077316 154082413 - MGP_C57BL6NJ_P0076158 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076159.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154077403 154082413 - Zdhhc4 protein_coding processed_transcript MGP_C57BL6NJ_T0076160.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154077418 154082412 - MGP_C57BL6NJ_P0076160 Zdhhc4 protein_coding protein_coding MGP_C57BL6NJ_T0076161.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154077516 154081753 - Zdhhc4 protein_coding retained_intron MGP_C57BL6NJ_T0076162.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154079176 154082373 - Zdhhc4 protein_coding processed_transcript MGP_C57BL6NJ_T0076163.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154079239 154082376 - Zdhhc4 protein_coding processed_transcript MGP_C57BL6NJ_T0076164.1 MGP_C57BL6NJ_G0030760.1 mouse_genomes_project 5 154081478 154082386 - Zdhhc4 protein_coding processed_transcript MGP_C57BL6NJ_T0070581.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5522737 5846719 - MGP_C57BL6NJ_P0070581 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070582.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5522737 5846818 - MGP_C57BL6NJ_P0070582 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070583.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5522737 5846719 - MGP_C57BL6NJ_P0070583 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070584.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5522737 5846818 - MGP_C57BL6NJ_P0070584 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070585.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5522737 5846719 - MGP_C57BL6NJ_P0070585 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070586.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5528224 5572179 - MGP_C57BL6NJ_P0070586 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070587.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5529058 5567689 - MGP_C57BL6NJ_P0070587 Adam22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070588.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5529058 5567689 - MGP_C57BL6NJ_P0070588 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070589.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070589 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070590.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070590 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070591.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070591 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070592.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070592 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070593.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070593 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070594.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070594 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070595.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070595 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070596.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070596 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070597.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070597 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070598.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5533973 5567689 - MGP_C57BL6NJ_P0070598 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070599.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5540057 5542360 - Adam22 protein_coding retained_intron MGP_C57BL6NJ_T0070600.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5544379 5846814 - MGP_C57BL6NJ_P0070600 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070601.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5544442 5567689 - MGP_C57BL6NJ_P0070601 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070602.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5601256 5846818 - MGP_C57BL6NJ_P0070602 Adam22 protein_coding protein_coding MGP_C57BL6NJ_T0070603.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5698000 5846871 - Adam22 protein_coding processed_transcript MGP_C57BL6NJ_T0070604.1 MGP_C57BL6NJ_G0029712.1 mouse_genomes_project 5 5845685 5846897 - Adam22 protein_coding retained_intron MGP_C57BL6NJ_T0001937.1 MGP_C57BL6NJ_G0001830.1 mouse_genomes_project 5 129386961 129390221 - TEC TEC MGP_C57BL6NJ_T0018628.1 MGP_C57BL6NJ_G0015996.1 mouse_genomes_project 5 77098845 77099423 + Usp46os2 processed_transcript retained_intron MGP_C57BL6NJ_T0018629.1 MGP_C57BL6NJ_G0015996.1 mouse_genomes_project 5 77098846 77099423 + Usp46os2 processed_transcript processed_transcript MGP_C57BL6NJ_T0018630.1 MGP_C57BL6NJ_G0015996.1 mouse_genomes_project 5 77098851 77106599 + Usp46os2 processed_transcript antisense MGP_C57BL6NJ_T0075368.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144773697 144785407 - MGP_C57BL6NJ_P0075368 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075369.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144773697 144777668 - MGP_C57BL6NJ_P0075369 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075370.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144773699 144785700 - MGP_C57BL6NJ_P0075370 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075371.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144773699 144784819 - MGP_C57BL6NJ_P0075371 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075372.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144774025 144784780 - MGP_C57BL6NJ_P0075372 Wbscr22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075373.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144774027 144777468 - Wbscr22 protein_coding retained_intron MGP_C57BL6NJ_T0075374.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144774073 144777760 - Wbscr22 protein_coding retained_intron MGP_C57BL6NJ_T0075375.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144774353 144777654 - Wbscr22 protein_coding retained_intron MGP_C57BL6NJ_T0075376.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144776789 144782210 - Wbscr22 protein_coding processed_transcript MGP_C57BL6NJ_T0075377.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144777220 144784789 - Wbscr22 protein_coding retained_intron MGP_C57BL6NJ_T0075378.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144777626 144782082 - Wbscr22 protein_coding retained_intron MGP_C57BL6NJ_T0075379.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144779935 144784505 - MGP_C57BL6NJ_P0075379 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075380.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144782001 144784831 - MGP_C57BL6NJ_P0075380 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0075381.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144784477 144784820 - Wbscr22 protein_coding processed_transcript MGP_C57BL6NJ_T0075382.1 MGP_C57BL6NJ_G0030602.1 mouse_genomes_project 5 144784897 144785390 - MGP_C57BL6NJ_P0075382 Wbscr22 protein_coding protein_coding MGP_C57BL6NJ_T0005004.1 MGP_C57BL6NJ_G0004300.1 mouse_genomes_project 5 137422539 137428541 + Gm42817 antisense antisense MGP_C57BL6NJ_T0008586.1 MGP_C57BL6NJ_G0006962.1 mouse_genomes_project 5 141985639 141990220 + Gm42626 lincRNA lincRNA MGP_C57BL6NJ_T0076485.1 MGP_C57BL6NJ_G0030835.1 mouse_genomes_project 5 160365682 160483014 - MGP_C57BL6NJ_P0076485 Gm42791 protein_coding protein_coding MGP_C57BL6NJ_T0076488.1 MGP_C57BL6NJ_G0030835.1 mouse_genomes_project 5 160466314 160466970 - Gm42791 protein_coding processed_transcript MGP_C57BL6NJ_T0072889.1 MGP_C57BL6NJ_G0030118.1 mouse_genomes_project 5 92124426 92140356 - MGP_C57BL6NJ_P0072889 Sult1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072890.1 MGP_C57BL6NJ_G0030118.1 mouse_genomes_project 5 92126361 92131528 - Sult1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0071893.1 MGP_C57BL6NJ_G0029934.1 mouse_genomes_project 5 38055225 38059508 + MGP_C57BL6NJ_P0071893 Cytl1 protein_coding protein_coding MGP_C57BL6NJ_T0071894.1 MGP_C57BL6NJ_G0029934.1 mouse_genomes_project 5 38056965 38059503 + Cytl1 protein_coding retained_intron MGP_C57BL6NJ_T0072616.1 MGP_C57BL6NJ_G0030060.1 mouse_genomes_project 5 76700562 76728857 + MGP_C57BL6NJ_P0072616 Spata18 protein_coding protein_coding MGP_C57BL6NJ_T0072617.1 MGP_C57BL6NJ_G0030060.1 mouse_genomes_project 5 76700565 76724766 + MGP_C57BL6NJ_P0072617 Spata18 protein_coding non_stop_decay MGP_C57BL6NJ_T0072618.1 MGP_C57BL6NJ_G0030060.1 mouse_genomes_project 5 76706793 76728827 + MGP_C57BL6NJ_P0072618 Spata18 protein_coding protein_coding MGP_C57BL6NJ_T0072619.1 MGP_C57BL6NJ_G0030060.1 mouse_genomes_project 5 76708519 76728829 + MGP_C57BL6NJ_P0072619 Spata18 protein_coding protein_coding MGP_C57BL6NJ_T0074409.1 MGP_C57BL6NJ_G0030444.1 mouse_genomes_project 5 128809969 128841359 - MGP_C57BL6NJ_P0074409 Oas3 protein_coding protein_coding MGP_C57BL6NJ_T0074410.1 MGP_C57BL6NJ_G0030444.1 mouse_genomes_project 5 128811087 128813131 - MGP_C57BL6NJ_P0074410 Oas3 protein_coding protein_coding MGP_C57BL6NJ_T0074411.1 MGP_C57BL6NJ_G0030444.1 mouse_genomes_project 5 128812270 128814527 - Oas3 protein_coding retained_intron MGP_C57BL6NJ_T0074412.1 MGP_C57BL6NJ_G0030444.1 mouse_genomes_project 5 128827619 128841338 - Oas3 protein_coding retained_intron MGP_C57BL6NJ_T0072375.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68430309 68519292 - MGP_C57BL6NJ_P0072375 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072376.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68430309 68608479 - MGP_C57BL6NJ_P0072376 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072377.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68430316 68498970 - MGP_C57BL6NJ_P0072377 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072378.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68430317 68583035 - MGP_C57BL6NJ_P0072378 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072379.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68432362 68582189 - MGP_C57BL6NJ_P0072379 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072380.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68432362 68582189 - MGP_C57BL6NJ_P0072380 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072381.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68432751 68499069 - MGP_C57BL6NJ_P0072381 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072382.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68439363 68582067 - Rbm47 protein_coding retained_intron MGP_C57BL6NJ_T0072383.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68440606 68468709 - MGP_C57BL6NJ_P0072383 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072384.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68440849 68499960 - Rbm47 protein_coding processed_transcript MGP_C57BL6NJ_T0072385.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68441041 68498954 - MGP_C57BL6NJ_P0072385 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072386.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68441061 68582434 - MGP_C57BL6NJ_P0072386 Rbm47 protein_coding protein_coding MGP_C57BL6NJ_T0072387.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68460275 68582899 - Rbm47 protein_coding processed_transcript MGP_C57BL6NJ_T0072388.1 MGP_C57BL6NJ_G0030018.1 mouse_genomes_project 5 68460390 68582893 - Rbm47 protein_coding processed_transcript MGP_C57BL6NJ_T0015276.1 MGP_C57BL6NJ_G0013321.1 mouse_genomes_project 5 20727249 20727532 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010962.1 MGP_C57BL6NJ_G0009047.1 mouse_genomes_project 5 126209383 126209475 - Gm26455 miRNA miRNA MGP_C57BL6NJ_T0008416.1 MGP_C57BL6NJ_G0006856.1 mouse_genomes_project 5 107540078 107542343 + Gm43270 lincRNA lincRNA MGP_C57BL6NJ_T0073730.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117120037 117146801 + MGP_C57BL6NJ_P0073730 Ankle2 protein_coding protein_coding MGP_C57BL6NJ_T0073731.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117120037 117145619 + MGP_C57BL6NJ_P0073731 Ankle2 protein_coding protein_coding MGP_C57BL6NJ_T0073732.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117120074 117146797 + MGP_C57BL6NJ_P0073732 Ankle2 protein_coding protein_coding MGP_C57BL6NJ_T0073733.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117120196 117127214 + Ankle2 protein_coding retained_intron MGP_C57BL6NJ_T0073734.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117126554 117127296 + Ankle2 protein_coding retained_intron MGP_C57BL6NJ_T0073735.1 MGP_C57BL6NJ_G0030311.1 mouse_genomes_project 5 117140889 117143215 + Ankle2 protein_coding processed_transcript MGP_C57BL6NJ_T0100452.1 MGP_C57BL6NJ_G0038498.1 mouse_genomes_project 5 73340149 73340256 - Gm26072 snRNA snRNA MGP_C57BL6NJ_T0001595.1 MGP_C57BL6NJ_G0001494.1 mouse_genomes_project 5 13082799 13087357 + TEC TEC MGP_C57BL6NJ_T0004955.1 MGP_C57BL6NJ_G0004268.1 mouse_genomes_project 5 123772736 123785650 + Gm14507 antisense antisense MGP_C57BL6NJ_T0001657.1 MGP_C57BL6NJ_G0001553.1 mouse_genomes_project 5 41863906 41865571 + TEC TEC MGP_C57BL6NJ_T0073683.1 MGP_C57BL6NJ_G0030299.1 mouse_genomes_project 5 115879881 115904903 - MGP_C57BL6NJ_P0073683 Vmn2r13 protein_coding protein_coding MGP_C57BL6NJ_T0076191.1 MGP_C57BL6NJ_G0030767.1 mouse_genomes_project 5 154507067 154529050 - MGP_C57BL6NJ_P0076191 Usp42 protein_coding protein_coding MGP_C57BL6NJ_T0076192.1 MGP_C57BL6NJ_G0030767.1 mouse_genomes_project 5 154510467 154512328 - Usp42 protein_coding processed_transcript MGP_C57BL6NJ_T0076193.1 MGP_C57BL6NJ_G0030767.1 mouse_genomes_project 5 154510482 154513902 - Usp42 protein_coding retained_intron MGP_C57BL6NJ_T0076194.1 MGP_C57BL6NJ_G0030767.1 mouse_genomes_project 5 154513118 154524738 - Usp42 protein_coding retained_intron MGP_C57BL6NJ_T0076195.1 MGP_C57BL6NJ_G0030767.1 mouse_genomes_project 5 154518367 154519660 - Usp42 protein_coding retained_intron MGP_C57BL6NJ_T0015403.1 MGP_C57BL6NJ_G0013448.1 mouse_genomes_project 5 70010011 70010303 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072681.1 MGP_C57BL6NJ_G0030070.1 mouse_genomes_project 5 79160880 79210489 - MGP_C57BL6NJ_P0072681 Kdr protein_coding protein_coding MGP_C57BL6NJ_T0072682.1 MGP_C57BL6NJ_G0030070.1 mouse_genomes_project 5 79187386 79210489 - Kdr protein_coding retained_intron MGP_C57BL6NJ_T0072683.1 MGP_C57BL6NJ_G0030070.1 mouse_genomes_project 5 79191265 79210489 - Kdr protein_coding retained_intron MGP_C57BL6NJ_T0073410.1 MGP_C57BL6NJ_G0030237.1 mouse_genomes_project 5 109963628 110002187 - MGP_C57BL6NJ_P0073410 Hsd17b11 protein_coding protein_coding MGP_C57BL6NJ_T0073411.1 MGP_C57BL6NJ_G0030237.1 mouse_genomes_project 5 109979593 110002106 - MGP_C57BL6NJ_P0073411 Hsd17b11 protein_coding protein_coding MGP_C57BL6NJ_T0015257.1 MGP_C57BL6NJ_G0013302.1 mouse_genomes_project 5 14457089 14457498 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072620.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77064925 77134592 - MGP_C57BL6NJ_P0072620 Usp46 protein_coding protein_coding MGP_C57BL6NJ_T0072621.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77065198 77134603 - MGP_C57BL6NJ_P0072621 Usp46 protein_coding protein_coding MGP_C57BL6NJ_T0072622.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77068340 77102239 - Usp46 protein_coding processed_transcript MGP_C57BL6NJ_T0072623.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77092940 77096016 - MGP_C57BL6NJ_P0072623 Usp46 protein_coding protein_coding MGP_C57BL6NJ_T0072624.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77095917 77099169 - Usp46 protein_coding retained_intron MGP_C57BL6NJ_T0072625.1 MGP_C57BL6NJ_G0030061.1 mouse_genomes_project 5 77095963 77131924 - MGP_C57BL6NJ_P0072625 Usp46 protein_coding protein_coding MGP_C57BL6NJ_T0076497.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160699999 160731678 + MGP_C57BL6NJ_P0076497 Uspl1 protein_coding protein_coding MGP_C57BL6NJ_T0076498.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160700010 160709660 + MGP_C57BL6NJ_P0076498 Uspl1 protein_coding protein_coding MGP_C57BL6NJ_T0076499.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160700010 160731678 + MGP_C57BL6NJ_P0076499 Uspl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076500.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160700113 160709427 + Uspl1 protein_coding processed_transcript MGP_C57BL6NJ_T0076501.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160701585 160704337 + Uspl1 protein_coding retained_intron MGP_C57BL6NJ_T0076502.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160703107 160731689 + MGP_C57BL6NJ_P0076502 Uspl1 protein_coding protein_coding MGP_C57BL6NJ_T0076503.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160704191 160705473 + Uspl1 protein_coding retained_intron MGP_C57BL6NJ_T0076504.1 MGP_C57BL6NJ_G0030837.1 mouse_genomes_project 5 160706668 160731682 + Uspl1 protein_coding retained_intron MGP_C57BL6NJ_T0074072.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122082525 122115657 + MGP_C57BL6NJ_P0074072 Ankrd13a protein_coding protein_coding MGP_C57BL6NJ_T0074073.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122082793 122116028 + Ankrd13a protein_coding processed_transcript MGP_C57BL6NJ_T0074074.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122095903 122113446 + MGP_C57BL6NJ_P0074074 Ankrd13a protein_coding protein_coding MGP_C57BL6NJ_T0074075.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122105601 122116028 + Ankrd13a protein_coding processed_transcript MGP_C57BL6NJ_T0074076.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122109291 122116028 + Ankrd13a protein_coding processed_transcript MGP_C57BL6NJ_T0074077.1 MGP_C57BL6NJ_G0030375.1 mouse_genomes_project 5 122109405 122111398 + Ankrd13a protein_coding retained_intron MGP_C57BL6NJ_T0015463.1 MGP_C57BL6NJ_G0013508.1 mouse_genomes_project 5 97262114 97263743 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074986.1 MGP_C57BL6NJ_G0030536.1 mouse_genomes_project 5 133801632 133811764 + MGP_C57BL6NJ_P0074986 Fam101a protein_coding protein_coding MGP_C57BL6NJ_T0074987.1 MGP_C57BL6NJ_G0030536.1 mouse_genomes_project 5 133802691 133811763 + MGP_C57BL6NJ_P0074987 Fam101a protein_coding protein_coding MGP_C57BL6NJ_T0074988.1 MGP_C57BL6NJ_G0030536.1 mouse_genomes_project 5 133809329 133810709 + Fam101a protein_coding processed_transcript MGP_C57BL6NJ_T0001846.1 MGP_C57BL6NJ_G0001739.1 mouse_genomes_project 5 94209912 94212053 + TEC TEC MGP_C57BL6NJ_T0010950.1 MGP_C57BL6NJ_G0009035.1 mouse_genomes_project 5 110035921 110035982 + Mir5619 miRNA miRNA MGP_C57BL6NJ_T0015271.1 MGP_C57BL6NJ_G0013316.1 mouse_genomes_project 5 20033408 20034804 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004885.1 MGP_C57BL6NJ_G0004221.1 mouse_genomes_project 5 80754290 80762086 + Gm43261 antisense antisense MGP_C57BL6NJ_T0071375.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31099289 31102984 - MGP_C57BL6NJ_P0071375 Fndc4 protein_coding protein_coding MGP_C57BL6NJ_T0071376.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31099933 31102919 - MGP_C57BL6NJ_P0071376 Fndc4 protein_coding protein_coding MGP_C57BL6NJ_T0071377.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31099933 31100761 - MGP_C57BL6NJ_P0071377 Fndc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071378.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31100319 31101014 - Fndc4 protein_coding retained_intron MGP_C57BL6NJ_T0071379.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31100733 31102481 - MGP_C57BL6NJ_P0071379 Fndc4 protein_coding protein_coding MGP_C57BL6NJ_T0071380.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31101133 31102307 - Fndc4 protein_coding retained_intron MGP_C57BL6NJ_T0071381.1 MGP_C57BL6NJ_G0029853.1 mouse_genomes_project 5 31101762 31103128 - MGP_C57BL6NJ_P0071381 Fndc4 protein_coding protein_coding MGP_C57BL6NJ_T0015392.1 MGP_C57BL6NJ_G0013437.1 mouse_genomes_project 5 66203277 66203761 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073354.1 MGP_C57BL6NJ_G0030226.1 mouse_genomes_project 5 107491666 107499745 - MGP_C57BL6NJ_P0073354 Nkx6-1 protein_coding protein_coding MGP_C57BL6NJ_T0001751.1 MGP_C57BL6NJ_G0001646.1 mouse_genomes_project 5 59585893 59587997 + TEC TEC MGP_C57BL6NJ_T0001927.1 MGP_C57BL6NJ_G0001820.1 mouse_genomes_project 5 126430446 126431466 + TEC TEC MGP_C57BL6NJ_T0103221.1 MGP_C57BL6NJ_G0041015.1 mouse_genomes_project 5 155906317 155918821 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001812.1 MGP_C57BL6NJ_G0001706.1 mouse_genomes_project 5 71963257 71965392 - TEC TEC MGP_C57BL6NJ_T0010969.1 MGP_C57BL6NJ_G0009054.1 mouse_genomes_project 5 134329832 134329909 + Gm27551 miRNA miRNA MGP_C57BL6NJ_T0010978.1 MGP_C57BL6NJ_G0009063.1 mouse_genomes_project 5 146972013 146972122 + Mir702 miRNA miRNA MGP_C57BL6NJ_T0073452.1 MGP_C57BL6NJ_G0030253.1 mouse_genomes_project 5 111582660 111612595 - protein_coding retained_intron MGP_C57BL6NJ_T0074539.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130215886 130308402 - MGP_C57BL6NJ_P0074539 Cux2 protein_coding protein_coding MGP_C57BL6NJ_T0074540.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130217685 130225258 - Cux2 protein_coding retained_intron MGP_C57BL6NJ_T0074541.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130232255 130233491 - Cux2 protein_coding retained_intron MGP_C57BL6NJ_T0074542.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130238981 130286849 - Cux2 protein_coding processed_transcript MGP_C57BL6NJ_T0074543.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130238987 130262630 - Cux2 protein_coding processed_transcript MGP_C57BL6NJ_T0074544.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130250109 130470171 - MGP_C57BL6NJ_P0074544 Cux2 protein_coding protein_coding MGP_C57BL6NJ_T0074545.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130252776 130399458 - MGP_C57BL6NJ_P0074545 Cux2 protein_coding protein_coding MGP_C57BL6NJ_T0074546.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130262657 130288509 - Cux2 protein_coding processed_transcript MGP_C57BL6NJ_T0074547.1 MGP_C57BL6NJ_G0030469.1 mouse_genomes_project 5 130303476 130467960 - Cux2 protein_coding processed_transcript MGP_C57BL6NJ_T0004976.1 MGP_C57BL6NJ_G0004281.1 mouse_genomes_project 5 129623797 129627252 + antisense antisense MGP_C57BL6NJ_T0075438.1 MGP_C57BL6NJ_G0030616.1 mouse_genomes_project 5 145345721 145348832 - MGP_C57BL6NJ_P0075438 Ccl24 protein_coding protein_coding MGP_C57BL6NJ_T0075439.1 MGP_C57BL6NJ_G0030616.1 mouse_genomes_project 5 145346364 145348832 - MGP_C57BL6NJ_P0075439 Ccl24 protein_coding protein_coding MGP_C57BL6NJ_T0075850.1 MGP_C57BL6NJ_G0030694.1 mouse_genomes_project 5 148412803 148420711 - MGP_C57BL6NJ_P0075850 Gal3st4 protein_coding protein_coding MGP_C57BL6NJ_T0075851.1 MGP_C57BL6NJ_G0030694.1 mouse_genomes_project 5 148412807 148420625 - MGP_C57BL6NJ_P0075851 Gal3st4 protein_coding protein_coding MGP_C57BL6NJ_T0075852.1 MGP_C57BL6NJ_G0030694.1 mouse_genomes_project 5 148412820 148420672 - Gal3st4 protein_coding processed_transcript MGP_C57BL6NJ_T0075853.1 MGP_C57BL6NJ_G0030694.1 mouse_genomes_project 5 148412820 148420672 - MGP_C57BL6NJ_P0075853 Gal3st4 protein_coding protein_coding MGP_C57BL6NJ_T0075855.1 MGP_C57BL6NJ_G0030694.1 mouse_genomes_project 5 148418863 148420620 - MGP_C57BL6NJ_P0075855 Gal3st4 protein_coding protein_coding MGP_C57BL6NJ_T0001617.1 MGP_C57BL6NJ_G0001515.1 mouse_genomes_project 5 26647770 26650366 + TEC TEC MGP_C57BL6NJ_T0075730.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147679438 147680973 + MGP_C57BL6NJ_P0075730 Sap25 protein_coding protein_coding MGP_C57BL6NJ_T0075731.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147679541 147681007 + MGP_C57BL6NJ_P0075731 Sap25 protein_coding protein_coding MGP_C57BL6NJ_T0075732.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147679599 147680446 + Sap25 protein_coding retained_intron MGP_C57BL6NJ_T0075733.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147680048 147680652 + Sap25 protein_coding retained_intron MGP_C57BL6NJ_T0075734.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147680282 147680942 + Sap25 protein_coding retained_intron MGP_C57BL6NJ_T0075735.1 MGP_C57BL6NJ_G0030668.1 mouse_genomes_project 5 147680453 147681004 + Sap25 protein_coding retained_intron MGP_C57BL6NJ_T0072018.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695172 44806973 - MGP_C57BL6NJ_P0072018 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072019.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695174 44706678 - MGP_C57BL6NJ_P0072019 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072020.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695174 44806700 - MGP_C57BL6NJ_P0072020 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072021.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695174 44804244 - MGP_C57BL6NJ_P0072021 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072022.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695174 44807051 - MGP_C57BL6NJ_P0072022 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072023.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695177 44799787 - MGP_C57BL6NJ_P0072023 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072024.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44695177 44799787 - MGP_C57BL6NJ_P0072024 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072025.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44702832 44804211 - MGP_C57BL6NJ_P0072025 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072026.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44702995 44799732 - MGP_C57BL6NJ_P0072026 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072027.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44702995 44799732 - MGP_C57BL6NJ_P0072027 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072028.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44702995 44799787 - MGP_C57BL6NJ_P0072028 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072029.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44714257 44735384 - Prom1 protein_coding retained_intron MGP_C57BL6NJ_T0072030.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44729158 44748728 - MGP_C57BL6NJ_P0072030 Prom1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072031.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44732043 44747802 - Prom1 protein_coding retained_intron MGP_C57BL6NJ_T0072032.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44747178 44806977 - Prom1 protein_coding retained_intron MGP_C57BL6NJ_T0072033.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44750747 44770798 - Prom1 protein_coding processed_transcript MGP_C57BL6NJ_T0072034.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44759250 44804205 - MGP_C57BL6NJ_P0072034 Prom1 protein_coding protein_coding MGP_C57BL6NJ_T0072035.1 MGP_C57BL6NJ_G0029959.1 mouse_genomes_project 5 44804673 44806977 - Prom1 protein_coding processed_transcript MGP_C57BL6NJ_T0004857.1 MGP_C57BL6NJ_G0004197.1 mouse_genomes_project 5 54221819 54223321 - Gm17182 antisense antisense MGP_C57BL6NJ_T0071846.1 MGP_C57BL6NJ_G0029926.1 mouse_genomes_project 5 37058839 37082572 - MGP_C57BL6NJ_P0071846 Man2b2 protein_coding protein_coding MGP_C57BL6NJ_T0071847.1 MGP_C57BL6NJ_G0029926.1 mouse_genomes_project 5 37060724 37064882 - MGP_C57BL6NJ_P0071847 Man2b2 protein_coding protein_coding MGP_C57BL6NJ_T0071848.1 MGP_C57BL6NJ_G0029926.1 mouse_genomes_project 5 37060730 37069603 - MGP_C57BL6NJ_P0071848 Man2b2 protein_coding protein_coding MGP_C57BL6NJ_T0001871.1 MGP_C57BL6NJ_G0001764.1 mouse_genomes_project 5 107811235 107812580 + TEC TEC MGP_C57BL6NJ_T0103196.1 MGP_C57BL6NJ_G0040990.1 mouse_genomes_project 5 87971819 87972408 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0072357.1 MGP_C57BL6NJ_G0030015.1 mouse_genomes_project 5 68244215 68281796 + MGP_C57BL6NJ_P0072357 Rhoh protein_coding protein_coding MGP_C57BL6NJ_T0072358.1 MGP_C57BL6NJ_G0030015.1 mouse_genomes_project 5 68246710 68278539 + MGP_C57BL6NJ_P0072358 Rhoh protein_coding protein_coding MGP_C57BL6NJ_T0072359.1 MGP_C57BL6NJ_G0030015.1 mouse_genomes_project 5 68247283 68251638 + Rhoh protein_coding processed_transcript MGP_C57BL6NJ_T0072360.1 MGP_C57BL6NJ_G0030015.1 mouse_genomes_project 5 68247321 68252102 + Rhoh protein_coding retained_intron MGP_C57BL6NJ_T0008504.1 MGP_C57BL6NJ_G0006910.1 mouse_genomes_project 5 123839115 123842794 - Gm13838 lincRNA lincRNA MGP_C57BL6NJ_T0074224.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337477 123427506 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074225.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337479 123365983 + MGP_C57BL6NJ_P0074225 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074226.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337480 123366001 + MGP_C57BL6NJ_P0074226 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074227.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337843 123427513 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074228.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337843 123509820 + MGP_C57BL6NJ_P0074228 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074229.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123337843 123512394 + MGP_C57BL6NJ_P0074229 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074230.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123338570 123509795 + MGP_C57BL6NJ_P0074230 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074231.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123338570 123509795 + MGP_C57BL6NJ_P0074231 Cit protein_coding protein_coding MGP_C57BL6NJ_T0074232.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123338660 123346883 + Cit protein_coding processed_transcript MGP_C57BL6NJ_T0074233.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123343177 123355166 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074234.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123380633 123381817 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074235.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123407706 123427404 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074236.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123407735 123512383 + MGP_C57BL6NJ_P0074236 Cit protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074237.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123427444 123510261 + Cit protein_coding processed_transcript MGP_C57BL6NJ_T0074238.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123427889 123509835 + Cit protein_coding processed_transcript MGP_C57BL6NJ_T0074239.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123435429 123448678 + Cit protein_coding processed_transcript MGP_C57BL6NJ_T0074240.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123447042 123502239 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0074241.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123452697 123454257 + Cit protein_coding processed_transcript MGP_C57BL6NJ_T0074242.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123470595 123509832 + MGP_C57BL6NJ_P0074242 Cit protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074243.1 MGP_C57BL6NJ_G0030407.1 mouse_genomes_project 5 123489776 123493393 + Cit protein_coding retained_intron MGP_C57BL6NJ_T0008362.1 MGP_C57BL6NJ_G0006813.1 mouse_genomes_project 5 80314139 80326545 - 1700112J05Rik lincRNA lincRNA MGP_C57BL6NJ_T0015563.1 MGP_C57BL6NJ_G0013608.1 mouse_genomes_project 5 147305178 147305425 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074567.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609300 130628453 + MGP_C57BL6NJ_P0074567 Ppp1cc protein_coding protein_coding MGP_C57BL6NJ_T0074568.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609378 130628453 + MGP_C57BL6NJ_P0074568 Ppp1cc protein_coding protein_coding MGP_C57BL6NJ_T0074569.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609378 130628449 + MGP_C57BL6NJ_P0074569 Ppp1cc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074570.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609378 130628453 + MGP_C57BL6NJ_P0074570 Ppp1cc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074571.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609612 130628276 + MGP_C57BL6NJ_P0074571 Ppp1cc protein_coding protein_coding MGP_C57BL6NJ_T0074572.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130609976 130620786 + Ppp1cc protein_coding retained_intron MGP_C57BL6NJ_T0074573.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130619987 130628445 + MGP_C57BL6NJ_P0074573 Ppp1cc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074574.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130622700 130623912 + Ppp1cc protein_coding retained_intron MGP_C57BL6NJ_T0074575.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130622975 130628445 + MGP_C57BL6NJ_P0074575 Ppp1cc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074576.1 MGP_C57BL6NJ_G0030472.1 mouse_genomes_project 5 130623783 130627853 + MGP_C57BL6NJ_P0074576 Ppp1cc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074139.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122650517 122682009 - MGP_C57BL6NJ_P0074139 Rnf10 protein_coding protein_coding MGP_C57BL6NJ_T0074140.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122650875 122682006 - MGP_C57BL6NJ_P0074140 Rnf10 protein_coding protein_coding MGP_C57BL6NJ_T0074141.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122650875 122682003 - MGP_C57BL6NJ_P0074141 Rnf10 protein_coding protein_coding MGP_C57BL6NJ_T0074142.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122650880 122651795 - Rnf10 protein_coding retained_intron MGP_C57BL6NJ_T0074143.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122650884 122681412 - MGP_C57BL6NJ_P0074143 Rnf10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074144.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122652797 122655182 - Rnf10 protein_coding retained_intron MGP_C57BL6NJ_T0074145.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122657799 122658594 - Rnf10 protein_coding processed_transcript MGP_C57BL6NJ_T0074146.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122660399 122662465 - Rnf10 protein_coding retained_intron MGP_C57BL6NJ_T0074147.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122660420 122667064 - Rnf10 protein_coding processed_transcript MGP_C57BL6NJ_T0074148.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122663058 122664730 - Rnf10 protein_coding retained_intron MGP_C57BL6NJ_T0074149.1 MGP_C57BL6NJ_G0030392.1 mouse_genomes_project 5 122679730 122682006 - Rnf10 protein_coding retained_intron MGP_C57BL6NJ_T0072036.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44877197 44929560 - MGP_C57BL6NJ_P0072036 Tapt1 protein_coding protein_coding MGP_C57BL6NJ_T0072037.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44877202 44929555 - MGP_C57BL6NJ_P0072037 Tapt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072038.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44878539 44884862 - Tapt1 protein_coding retained_intron MGP_C57BL6NJ_T0072039.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44886268 44894158 - Tapt1 protein_coding retained_intron MGP_C57BL6NJ_T0072040.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44890717 44921151 - MGP_C57BL6NJ_P0072040 Tapt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072041.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44890732 44907280 - Tapt1 protein_coding retained_intron MGP_C57BL6NJ_T0072042.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44894433 44907450 - Tapt1 protein_coding retained_intron MGP_C57BL6NJ_T0072043.1 MGP_C57BL6NJ_G0029960.1 mouse_genomes_project 5 44920767 44929564 - Tapt1 protein_coding retained_intron MGP_C57BL6NJ_T0103203.1 MGP_C57BL6NJ_G0040997.1 mouse_genomes_project 5 91824032 91846941 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001632.1 MGP_C57BL6NJ_G0001529.1 mouse_genomes_project 5 31795422 31796117 + TEC TEC MGP_C57BL6NJ_T0015422.1 MGP_C57BL6NJ_G0013467.1 mouse_genomes_project 5 79653406 79653558 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099455.1 MGP_C57BL6NJ_G0037512.1 mouse_genomes_project 5 1182285 1184172 + Gm43031 sense_intronic sense_intronic MGP_C57BL6NJ_T0008571.1 MGP_C57BL6NJ_G0006954.1 mouse_genomes_project 5 136586162 136590009 + lincRNA lincRNA MGP_C57BL6NJ_T0103189.1 MGP_C57BL6NJ_G0040983.1 mouse_genomes_project 5 488289 488457 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0073228.1 MGP_C57BL6NJ_G0030200.1 mouse_genomes_project 5 102849228 102861078 - MGP_C57BL6NJ_P0073228 Naa11 protein_coding protein_coding MGP_C57BL6NJ_T0015555.1 MGP_C57BL6NJ_G0013600.1 mouse_genomes_project 5 144092867 144093077 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073925.1 MGP_C57BL6NJ_G0030349.1 mouse_genomes_project 5 120803935 120842806 - MGP_C57BL6NJ_P0073925 Cmklr1 protein_coding protein_coding MGP_C57BL6NJ_T0073926.1 MGP_C57BL6NJ_G0030349.1 mouse_genomes_project 5 120806146 120819995 - MGP_C57BL6NJ_P0073926 Cmklr1 protein_coding protein_coding MGP_C57BL6NJ_T0073927.1 MGP_C57BL6NJ_G0030349.1 mouse_genomes_project 5 120807037 120835983 - MGP_C57BL6NJ_P0073927 Cmklr1 protein_coding protein_coding MGP_C57BL6NJ_T0073928.1 MGP_C57BL6NJ_G0030349.1 mouse_genomes_project 5 120823685 120842776 - Cmklr1 protein_coding processed_transcript MGP_C57BL6NJ_T0074509.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130035861 130092269 + Atxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0074510.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130040258 130166022 + MGP_C57BL6NJ_P0074510 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0074511.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130041489 130121085 + Atxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0074512.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130092281 130166021 + MGP_C57BL6NJ_P0074512 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0074513.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130126226 130144525 + MGP_C57BL6NJ_P0074513 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0074514.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130129714 130132836 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074515.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130133420 130165792 + MGP_C57BL6NJ_P0074515 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0074516.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130134587 130144936 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074517.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130146872 130154507 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074518.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130152390 130153337 + Atxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0074519.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130152817 130162023 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074520.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130153182 130160128 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074521.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130153301 130165703 + MGP_C57BL6NJ_P0074521 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0074522.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130156650 130165806 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074523.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130157316 130164527 + MGP_C57BL6NJ_P0074523 Atxn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074524.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130161735 130162605 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074525.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130162036 130163002 + Atxn2 protein_coding retained_intron MGP_C57BL6NJ_T0074526.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130162531 130167565 + MGP_C57BL6NJ_P0074526 Atxn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074527.1 MGP_C57BL6NJ_G0030466.1 mouse_genomes_project 5 130162578 130165970 + MGP_C57BL6NJ_P0074527 Atxn2 protein_coding protein_coding MGP_C57BL6NJ_T0008406.1 MGP_C57BL6NJ_G0006850.1 mouse_genomes_project 5 105892728 105896826 + Gm9932 lincRNA lincRNA MGP_C57BL6NJ_T0099470.1 MGP_C57BL6NJ_G0037527.1 mouse_genomes_project 5 97666807 97668045 + Gm20500 sense_intronic sense_intronic MGP_C57BL6NJ_T0100476.1 MGP_C57BL6NJ_G0038522.1 mouse_genomes_project 5 113141850 113141972 + Gm24191 snRNA snRNA MGP_C57BL6NJ_T0001661.1 MGP_C57BL6NJ_G0001557.1 mouse_genomes_project 5 44192671 44196939 + TEC TEC MGP_C57BL6NJ_T0073556.1 MGP_C57BL6NJ_G0030274.1 mouse_genomes_project 5 114253457 114263553 - MGP_C57BL6NJ_P0073556 Gfi1 protein_coding protein_coding MGP_C57BL6NJ_T0073557.1 MGP_C57BL6NJ_G0030274.1 mouse_genomes_project 5 114253457 114262091 - MGP_C57BL6NJ_P0073557 Gfi1 protein_coding protein_coding MGP_C57BL6NJ_T0073558.1 MGP_C57BL6NJ_G0030274.1 mouse_genomes_project 5 114253466 114263553 - MGP_C57BL6NJ_P0073558 Gfi1 protein_coding protein_coding MGP_C57BL6NJ_T0073559.1 MGP_C57BL6NJ_G0030274.1 mouse_genomes_project 5 114254024 114261709 - MGP_C57BL6NJ_P0073559 Gfi1 protein_coding protein_coding MGP_C57BL6NJ_T0073560.1 MGP_C57BL6NJ_G0030274.1 mouse_genomes_project 5 114258394 114263784 - MGP_C57BL6NJ_P0073560 Gfi1 protein_coding protein_coding MGP_C57BL6NJ_T0015481.1 MGP_C57BL6NJ_G0013526.1 mouse_genomes_project 5 108022102 108026354 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101753.1 MGP_C57BL6NJ_G0039799.1 mouse_genomes_project 5 104114658 104114789 + Gm24279 snoRNA snoRNA MGP_C57BL6NJ_T0074037.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121914971 121952753 - MGP_C57BL6NJ_P0074037 Trpv4 protein_coding protein_coding MGP_C57BL6NJ_T0074038.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121914973 121952750 - MGP_C57BL6NJ_P0074038 Trpv4 protein_coding protein_coding MGP_C57BL6NJ_T0074039.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121914976 121930689 - Trpv4 protein_coding retained_intron MGP_C57BL6NJ_T0074040.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121915472 121939231 - MGP_C57BL6NJ_P0074040 Trpv4 protein_coding protein_coding MGP_C57BL6NJ_T0074041.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121915472 121939231 - MGP_C57BL6NJ_P0074041 Trpv4 protein_coding protein_coding MGP_C57BL6NJ_T0074042.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121915472 121939231 - MGP_C57BL6NJ_P0074042 Trpv4 protein_coding protein_coding MGP_C57BL6NJ_T0074043.1 MGP_C57BL6NJ_G0030371.1 mouse_genomes_project 5 121921227 121925122 - Trpv4 protein_coding retained_intron MGP_C57BL6NJ_T0001718.1 MGP_C57BL6NJ_G0001613.1 mouse_genomes_project 5 50469253 50472366 - TEC TEC MGP_C57BL6NJ_T0076473.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159924275 159972306 - MGP_C57BL6NJ_P0076473 Ubl3 protein_coding protein_coding MGP_C57BL6NJ_T0076474.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159924769 159972433 - MGP_C57BL6NJ_P0076474 Ubl3 protein_coding protein_coding MGP_C57BL6NJ_T0076475.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159924782 159972433 - MGP_C57BL6NJ_P0076475 Ubl3 protein_coding protein_coding MGP_C57BL6NJ_T0076476.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159925618 159957237 - Ubl3 protein_coding processed_transcript MGP_C57BL6NJ_T0076477.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159928909 159971308 - Ubl3 protein_coding processed_transcript MGP_C57BL6NJ_T0076478.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159928919 159971300 - Ubl3 protein_coding processed_transcript MGP_C57BL6NJ_T0076479.1 MGP_C57BL6NJ_G0030833.1 mouse_genomes_project 5 159966232 159972342 - Ubl3 protein_coding retained_intron MGP_C57BL6NJ_T0001603.1 MGP_C57BL6NJ_G0001502.1 mouse_genomes_project 5 19608528 19609027 + TEC TEC MGP_C57BL6NJ_T0008266.1 MGP_C57BL6NJ_G0006740.1 mouse_genomes_project 5 33347301 33365846 - Gm20465 lincRNA lincRNA MGP_C57BL6NJ_T0001935.1 MGP_C57BL6NJ_G0001828.1 mouse_genomes_project 5 128802236 128803509 + TEC TEC MGP_C57BL6NJ_T0008352.1 MGP_C57BL6NJ_G0006805.1 mouse_genomes_project 5 78254534 78296806 + Gm19583 lincRNA lincRNA MGP_C57BL6NJ_T0001746.1 MGP_C57BL6NJ_G0001641.1 mouse_genomes_project 5 59515347 59518080 + TEC TEC MGP_C57BL6NJ_T0004816.1 MGP_C57BL6NJ_G0004165.1 mouse_genomes_project 5 30552099 30556723 - Gm15461 antisense antisense MGP_C57BL6NJ_T0004996.1 MGP_C57BL6NJ_G0004295.1 mouse_genomes_project 5 133490131 133493213 - 4930404A12Rik antisense antisense MGP_C57BL6NJ_T0004997.1 MGP_C57BL6NJ_G0004295.1 mouse_genomes_project 5 133490132 133493213 - 4930404A12Rik antisense antisense MGP_C57BL6NJ_T0075243.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143819529 143830192 - MGP_C57BL6NJ_P0075243 Ncf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075244.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143819736 143830192 - MGP_C57BL6NJ_P0075244 Ncf1 protein_coding protein_coding MGP_C57BL6NJ_T0075245.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143819736 143830192 - MGP_C57BL6NJ_P0075245 Ncf1 protein_coding protein_coding MGP_C57BL6NJ_T0075246.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143819736 143830192 - MGP_C57BL6NJ_P0075246 Ncf1 protein_coding protein_coding MGP_C57BL6NJ_T0075247.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143820848 143821699 - Ncf1 protein_coding retained_intron MGP_C57BL6NJ_T0075248.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143822921 143827874 - Ncf1 protein_coding retained_intron MGP_C57BL6NJ_T0075249.1 MGP_C57BL6NJ_G0030585.1 mouse_genomes_project 5 143825193 143827287 - Ncf1 protein_coding retained_intron MGP_C57BL6NJ_T0018636.1 MGP_C57BL6NJ_G0016000.1 mouse_genomes_project 5 113028023 113170731 - Gm28039 processed_transcript processed_transcript MGP_C57BL6NJ_T0002000.1 MGP_C57BL6NJ_G0001892.1 mouse_genomes_project 5 141418480 141420715 - TEC TEC MGP_C57BL6NJ_T0001828.1 MGP_C57BL6NJ_G0001721.1 mouse_genomes_project 5 77126142 77126892 + TEC TEC MGP_C57BL6NJ_T0015504.1 MGP_C57BL6NJ_G0013549.1 mouse_genomes_project 5 114723916 114725598 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008301.1 MGP_C57BL6NJ_G0006763.1 mouse_genomes_project 5 44490207 44491246 - Gm42555 lincRNA lincRNA MGP_C57BL6NJ_T0015491.1 MGP_C57BL6NJ_G0013536.1 mouse_genomes_project 5 112260663 112261129 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071603.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072463 34074044 + MGP_C57BL6NJ_P0071603 Gm1673 protein_coding protein_coding MGP_C57BL6NJ_T0071604.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072467 34074040 + Gm1673 protein_coding retained_intron MGP_C57BL6NJ_T0071605.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072500 34074040 + MGP_C57BL6NJ_P0071605 Gm1673 protein_coding protein_coding MGP_C57BL6NJ_T0071606.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072504 34074037 + MGP_C57BL6NJ_P0071606 Gm1673 protein_coding protein_coding MGP_C57BL6NJ_T0071607.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072540 34074041 + MGP_C57BL6NJ_P0071607 Gm1673 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071608.1 MGP_C57BL6NJ_G0029887.1 mouse_genomes_project 5 34072564 34074040 + MGP_C57BL6NJ_P0071608 Gm1673 protein_coding protein_coding MGP_C57BL6NJ_T0001721.1 MGP_C57BL6NJ_G0001616.1 mouse_genomes_project 5 51864303 51866864 + TEC TEC MGP_C57BL6NJ_T0001800.1 MGP_C57BL6NJ_G0001694.1 mouse_genomes_project 5 69977490 69979901 + TEC TEC MGP_C57BL6NJ_T0010959.1 MGP_C57BL6NJ_G0009044.1 mouse_genomes_project 5 122189458 122189575 + Mir6240 miRNA miRNA MGP_C57BL6NJ_T0008231.1 MGP_C57BL6NJ_G0006719.1 mouse_genomes_project 5 21777024 21785002 - A930003O13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008232.1 MGP_C57BL6NJ_G0006719.1 mouse_genomes_project 5 21777482 21780580 - A930003O13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008233.1 MGP_C57BL6NJ_G0006719.1 mouse_genomes_project 5 21782133 21785022 - A930003O13Rik lincRNA lincRNA MGP_C57BL6NJ_T0074150.1 MGP_C57BL6NJ_G0030393.1 mouse_genomes_project 5 122688753 122709291 + MGP_C57BL6NJ_P0074150 Coq5 protein_coding protein_coding MGP_C57BL6NJ_T0074151.1 MGP_C57BL6NJ_G0030393.1 mouse_genomes_project 5 122688782 122691827 + Coq5 protein_coding retained_intron MGP_C57BL6NJ_T0074152.1 MGP_C57BL6NJ_G0030393.1 mouse_genomes_project 5 122694568 122708628 + MGP_C57BL6NJ_P0074152 Coq5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011863.1 MGP_C57BL6NJ_G0009948.1 mouse_genomes_project 5 106144022 106144160 + Gm28030 misc_RNA misc_RNA MGP_C57BL6NJ_T0011851.1 MGP_C57BL6NJ_G0009936.1 mouse_genomes_project 5 22620740 22621070 - Gm25219 misc_RNA misc_RNA MGP_C57BL6NJ_T0073230.1 MGP_C57BL6NJ_G0030202.1 mouse_genomes_project 5 103371431 103530000 - MGP_C57BL6NJ_P0073230 Antxr2 protein_coding protein_coding MGP_C57BL6NJ_T0073231.1 MGP_C57BL6NJ_G0030202.1 mouse_genomes_project 5 103414410 103530081 - MGP_C57BL6NJ_P0073231 Antxr2 protein_coding protein_coding MGP_C57BL6NJ_T0073232.1 MGP_C57BL6NJ_G0030202.1 mouse_genomes_project 5 103459287 103500993 - Antxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0075647.1 MGP_C57BL6NJ_G0030653.1 mouse_genomes_project 5 147305436 147310183 - MGP_C57BL6NJ_P0075647 Trip6 protein_coding protein_coding MGP_C57BL6NJ_T0075648.1 MGP_C57BL6NJ_G0030653.1 mouse_genomes_project 5 147308733 147309969 - MGP_C57BL6NJ_P0075648 Trip6 protein_coding protein_coding MGP_C57BL6NJ_T0075649.1 MGP_C57BL6NJ_G0030653.1 mouse_genomes_project 5 147308760 147309943 - Trip6 protein_coding retained_intron MGP_C57BL6NJ_T0075650.1 MGP_C57BL6NJ_G0030653.1 mouse_genomes_project 5 147309139 147309986 - Trip6 protein_coding processed_transcript MGP_C57BL6NJ_T0074753.1 MGP_C57BL6NJ_G0030499.1 mouse_genomes_project 5 132047247 132103000 + MGP_C57BL6NJ_P0074753 Mlxip protein_coding protein_coding MGP_C57BL6NJ_T0074754.1 MGP_C57BL6NJ_G0030499.1 mouse_genomes_project 5 132047249 132115319 + MGP_C57BL6NJ_P0074754 Mlxip protein_coding protein_coding MGP_C57BL6NJ_T0074755.1 MGP_C57BL6NJ_G0030499.1 mouse_genomes_project 5 132102142 132115316 + MGP_C57BL6NJ_P0074755 Mlxip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074756.1 MGP_C57BL6NJ_G0030499.1 mouse_genomes_project 5 132108844 132110933 + Mlxip protein_coding processed_transcript MGP_C57BL6NJ_T0008404.1 MGP_C57BL6NJ_G0006848.1 mouse_genomes_project 5 105605405 105614637 + lincRNA lincRNA MGP_C57BL6NJ_T0015541.1 MGP_C57BL6NJ_G0013586.1 mouse_genomes_project 5 129786359 129786692 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001705.1 MGP_C57BL6NJ_G0001600.1 mouse_genomes_project 5 49925279 49926107 - TEC TEC MGP_C57BL6NJ_T0072945.1 MGP_C57BL6NJ_G0030131.1 mouse_genomes_project 5 92711360 92722640 + MGP_C57BL6NJ_P0072945 Smr2 protein_coding protein_coding MGP_C57BL6NJ_T0072946.1 MGP_C57BL6NJ_G0030131.1 mouse_genomes_project 5 92711360 92733265 + MGP_C57BL6NJ_P0072946 Smr2 protein_coding protein_coding MGP_C57BL6NJ_T0072947.1 MGP_C57BL6NJ_G0030131.1 mouse_genomes_project 5 92711360 92733265 + MGP_C57BL6NJ_P0072947 Smr2 protein_coding protein_coding MGP_C57BL6NJ_T0072948.1 MGP_C57BL6NJ_G0030131.1 mouse_genomes_project 5 92711360 92733265 + MGP_C57BL6NJ_P0072948 Smr2 protein_coding protein_coding MGP_C57BL6NJ_T0001685.1 MGP_C57BL6NJ_G0001581.1 mouse_genomes_project 5 46576355 46579476 - TEC TEC MGP_C57BL6NJ_T0001807.1 MGP_C57BL6NJ_G0001701.1 mouse_genomes_project 5 71637247 71640587 - TEC TEC MGP_C57BL6NJ_T0100441.1 MGP_C57BL6NJ_G0038487.1 mouse_genomes_project 5 51281143 51281250 - Gm22618 snRNA snRNA MGP_C57BL6NJ_T0001979.1 MGP_C57BL6NJ_G0001871.1 mouse_genomes_project 5 139181714 139185099 + TEC TEC MGP_C57BL6NJ_T0015357.1 MGP_C57BL6NJ_G0013402.1 mouse_genomes_project 5 50499218 50500288 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074422.1 MGP_C57BL6NJ_G0030449.1 mouse_genomes_project 5 129061641 129066770 + MGP_C57BL6NJ_P0074422 protein_coding protein_coding MGP_C57BL6NJ_T0010975.1 MGP_C57BL6NJ_G0009060.1 mouse_genomes_project 5 145659927 145660005 - Gm23268 miRNA miRNA MGP_C57BL6NJ_T0008619.1 MGP_C57BL6NJ_G0006989.1 mouse_genomes_project 5 157342034 157343573 - Gm43625 lincRNA lincRNA MGP_C57BL6NJ_T0008367.1 MGP_C57BL6NJ_G0006818.1 mouse_genomes_project 5 80867851 80876486 + Gm42761 lincRNA lincRNA MGP_C57BL6NJ_T0004806.1 MGP_C57BL6NJ_G0004158.1 mouse_genomes_project 5 23571278 23588643 - Gm15587 antisense antisense MGP_C57BL6NJ_T0004807.1 MGP_C57BL6NJ_G0004158.1 mouse_genomes_project 5 23574273 23588675 - Gm15587 antisense antisense MGP_C57BL6NJ_T0075912.1 MGP_C57BL6NJ_G0030707.1 mouse_genomes_project 5 149415972 149454551 + MGP_C57BL6NJ_P0075912 Dnaaf5 protein_coding protein_coding MGP_C57BL6NJ_T0075913.1 MGP_C57BL6NJ_G0030707.1 mouse_genomes_project 5 149434277 149446908 + Dnaaf5 protein_coding processed_transcript MGP_C57BL6NJ_T0001858.1 MGP_C57BL6NJ_G0001751.1 mouse_genomes_project 5 102354574 102355116 - TEC TEC MGP_C57BL6NJ_T0073866.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119461178 119469038 - MGP_C57BL6NJ_P0073866 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0073867.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119462268 119466563 - Asphd2 protein_coding processed_transcript MGP_C57BL6NJ_T0073868.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119468323 119470849 - MGP_C57BL6NJ_P0073868 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0073869.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119468512 119471692 - MGP_C57BL6NJ_P0073869 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0073870.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119468600 119470783 - MGP_C57BL6NJ_P0073870 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0073871.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119468635 119471126 - MGP_C57BL6NJ_P0073871 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0073872.1 MGP_C57BL6NJ_G0030337.1 mouse_genomes_project 5 119468705 119470755 - MGP_C57BL6NJ_P0073872 Asphd2 protein_coding protein_coding MGP_C57BL6NJ_T0008225.1 MGP_C57BL6NJ_G0006716.1 mouse_genomes_project 5 17213412 17221902 - Gm43030 lincRNA lincRNA MGP_C57BL6NJ_T0073412.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110034224 110046311 + MGP_C57BL6NJ_P0073412 Nudt9 protein_coding protein_coding MGP_C57BL6NJ_T0073413.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110034444 110047891 + MGP_C57BL6NJ_P0073413 Nudt9 protein_coding protein_coding MGP_C57BL6NJ_T0073414.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110034787 110053488 + MGP_C57BL6NJ_P0073414 Nudt9 protein_coding protein_coding MGP_C57BL6NJ_T0073415.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110034886 110046545 + Nudt9 protein_coding retained_intron MGP_C57BL6NJ_T0073416.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110035072 110046291 + MGP_C57BL6NJ_P0073416 Nudt9 protein_coding protein_coding MGP_C57BL6NJ_T0073417.1 MGP_C57BL6NJ_G0030238.1 mouse_genomes_project 5 110035539 110043634 + MGP_C57BL6NJ_P0073417 Nudt9 protein_coding protein_coding MGP_C57BL6NJ_T0015521.1 MGP_C57BL6NJ_G0013566.1 mouse_genomes_project 5 117848136 117848634 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015533.1 MGP_C57BL6NJ_G0013578.1 mouse_genomes_project 5 122704075 122704213 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008421.1 MGP_C57BL6NJ_G0006860.1 mouse_genomes_project 5 109260420 109262813 - 5430427N15Rik lincRNA lincRNA MGP_C57BL6NJ_T0015418.1 MGP_C57BL6NJ_G0013463.1 mouse_genomes_project 5 78251275 78251564 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010949.1 MGP_C57BL6NJ_G0009034.1 mouse_genomes_project 5 106232587 106232663 - Gm23222 miRNA miRNA MGP_C57BL6NJ_T0075207.1 MGP_C57BL6NJ_G0030579.1 mouse_genomes_project 5 140195371 140197333 - MGP_C57BL6NJ_P0075207 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0070742.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19639995 19770978 - MGP_C57BL6NJ_P0070742 Phtf2 protein_coding protein_coding MGP_C57BL6NJ_T0070743.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19640995 19654681 - MGP_C57BL6NJ_P0070743 Phtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070744.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19662996 19743715 - Phtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0070745.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19662999 19686182 - MGP_C57BL6NJ_P0070745 Phtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070746.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19669223 19770931 - Phtf2 protein_coding retained_intron MGP_C57BL6NJ_T0070747.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19673778 19770932 - Phtf2 protein_coding retained_intron MGP_C57BL6NJ_T0070748.1 MGP_C57BL6NJ_G0029740.1 mouse_genomes_project 5 19686158 19770899 - MGP_C57BL6NJ_P0070748 Phtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015567.1 MGP_C57BL6NJ_G0013612.1 mouse_genomes_project 5 147989534 147990286 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010947.1 MGP_C57BL6NJ_G0009032.1 mouse_genomes_project 5 97724588 97724700 - Mir1961 miRNA miRNA MGP_C57BL6NJ_T0004850.1 MGP_C57BL6NJ_G0004192.1 mouse_genomes_project 5 46226432 46242995 + Gm42413 antisense antisense MGP_C57BL6NJ_T0008533.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131713766 131718161 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008535.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131714343 131719399 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008536.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131714514 131721153 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008537.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131714894 131721743 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008539.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131716277 131721166 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008540.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131717522 131720341 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0008541.1 MGP_C57BL6NJ_G0006934.1 mouse_genomes_project 5 131718094 131721144 - AI480526 lincRNA lincRNA MGP_C57BL6NJ_T0001813.1 MGP_C57BL6NJ_G0001707.1 mouse_genomes_project 5 71977979 71979891 - TEC TEC MGP_C57BL6NJ_T0001741.1 MGP_C57BL6NJ_G0001636.1 mouse_genomes_project 5 59189036 59189191 + TEC TEC MGP_C57BL6NJ_T0103217.1 MGP_C57BL6NJ_G0041011.1 mouse_genomes_project 5 146985927 146989473 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0070809.1 MGP_C57BL6NJ_G0029754.1 mouse_genomes_project 5 20768726 20790046 + MGP_C57BL6NJ_P0070809 Psmc2 protein_coding protein_coding MGP_C57BL6NJ_T0070810.1 MGP_C57BL6NJ_G0029754.1 mouse_genomes_project 5 20780361 20784444 + Psmc2 protein_coding retained_intron MGP_C57BL6NJ_T0100455.1 MGP_C57BL6NJ_G0038501.1 mouse_genomes_project 5 75926242 75926328 - Gm24776 snRNA snRNA MGP_C57BL6NJ_T0018648.1 MGP_C57BL6NJ_G0016004.1 mouse_genomes_project 5 132007950 132011378 + processed_transcript sense_intronic MGP_C57BL6NJ_T0018649.1 MGP_C57BL6NJ_G0016004.1 mouse_genomes_project 5 132010426 132012336 + processed_transcript TEC MGP_C57BL6NJ_T0001879.1 MGP_C57BL6NJ_G0001772.1 mouse_genomes_project 5 111132164 111132533 - TEC TEC MGP_C57BL6NJ_T0005015.1 MGP_C57BL6NJ_G0004310.1 mouse_genomes_project 5 144697034 144710892 - Wbscr25 antisense antisense MGP_C57BL6NJ_T0005016.1 MGP_C57BL6NJ_G0004310.1 mouse_genomes_project 5 144702089 144710049 - Wbscr25 antisense antisense MGP_C57BL6NJ_T0073446.1 MGP_C57BL6NJ_G0030251.1 mouse_genomes_project 5 111319078 111344997 - MGP_C57BL6NJ_P0073446 Gbp4 protein_coding protein_coding MGP_C57BL6NJ_T0073447.1 MGP_C57BL6NJ_G0030251.1 mouse_genomes_project 5 111319078 111344997 - MGP_C57BL6NJ_P0073447 Gbp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073448.1 MGP_C57BL6NJ_G0030251.1 mouse_genomes_project 5 111326284 111344955 - MGP_C57BL6NJ_P0073448 Gbp4 protein_coding protein_coding MGP_C57BL6NJ_T0073449.1 MGP_C57BL6NJ_G0030251.1 mouse_genomes_project 5 111328405 111344951 - MGP_C57BL6NJ_P0073449 Gbp4 protein_coding protein_coding MGP_C57BL6NJ_T0073450.1 MGP_C57BL6NJ_G0030251.1 mouse_genomes_project 5 111338404 111344962 - Gbp4 protein_coding retained_intron MGP_C57BL6NJ_T0001585.1 MGP_C57BL6NJ_G0001484.1 mouse_genomes_project 5 11824491 11828431 + TEC TEC MGP_C57BL6NJ_T0015395.1 MGP_C57BL6NJ_G0013440.1 mouse_genomes_project 5 66409054 66410012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073966.1 MGP_C57BL6NJ_G0030357.1 mouse_genomes_project 5 121149068 121212945 - MGP_C57BL6NJ_P0073966 Ssh1 protein_coding protein_coding MGP_C57BL6NJ_T0073967.1 MGP_C57BL6NJ_G0030357.1 mouse_genomes_project 5 121151740 121212992 - MGP_C57BL6NJ_P0073967 Ssh1 protein_coding protein_coding MGP_C57BL6NJ_T0073968.1 MGP_C57BL6NJ_G0030357.1 mouse_genomes_project 5 121175622 121213040 - MGP_C57BL6NJ_P0073968 Ssh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073969.1 MGP_C57BL6NJ_G0030357.1 mouse_genomes_project 5 121179840 121184633 - MGP_C57BL6NJ_P0073969 Ssh1 protein_coding protein_coding MGP_C57BL6NJ_T0073970.1 MGP_C57BL6NJ_G0030357.1 mouse_genomes_project 5 121184480 121212980 - Ssh1 protein_coding retained_intron MGP_C57BL6NJ_T0071897.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38382294 38482461 + MGP_C57BL6NJ_P0071897 Stx18 protein_coding protein_coding MGP_C57BL6NJ_T0071898.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38382312 38482467 + MGP_C57BL6NJ_P0071898 Stx18 protein_coding protein_coding MGP_C57BL6NJ_T0071899.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38382343 38465352 + MGP_C57BL6NJ_P0071899 Stx18 protein_coding protein_coding MGP_C57BL6NJ_T0071900.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38382393 38482471 + MGP_C57BL6NJ_P0071900 Stx18 protein_coding protein_coding MGP_C57BL6NJ_T0071901.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38419695 38477285 + MGP_C57BL6NJ_P0071901 Stx18 protein_coding protein_coding MGP_C57BL6NJ_T0071902.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38460253 38470511 + Stx18 protein_coding processed_transcript MGP_C57BL6NJ_T0071903.1 MGP_C57BL6NJ_G0029936.1 mouse_genomes_project 5 38470120 38477311 + Stx18 protein_coding retained_intron MGP_C57BL6NJ_T0100469.1 MGP_C57BL6NJ_G0038515.1 mouse_genomes_project 5 102348008 102348202 + Gm24623 snRNA snRNA MGP_C57BL6NJ_T0072089.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897772 49233851 + MGP_C57BL6NJ_P0072089 Slit2 protein_coding protein_coding MGP_C57BL6NJ_T0072090.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 48907798 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072091.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 49110195 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072092.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 49230528 + MGP_C57BL6NJ_P0072092 Slit2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072093.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 49231629 + MGP_C57BL6NJ_P0072093 Slit2 protein_coding protein_coding MGP_C57BL6NJ_T0072094.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 49231629 + MGP_C57BL6NJ_P0072094 Slit2 protein_coding protein_coding MGP_C57BL6NJ_T0072095.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897788 49231629 + MGP_C57BL6NJ_P0072095 Slit2 protein_coding protein_coding MGP_C57BL6NJ_T0072096.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897792 49011354 + Slit2 protein_coding processed_transcript MGP_C57BL6NJ_T0072097.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48897811 48900303 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072098.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48899628 49099803 + Slit2 protein_coding processed_transcript MGP_C57BL6NJ_T0072099.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 48905307 49118043 + MGP_C57BL6NJ_P0072099 Slit2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072100.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49095800 49119247 + Slit2 protein_coding processed_transcript MGP_C57BL6NJ_T0072101.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49100843 49105695 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072102.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49109139 49146285 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072103.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49116504 49156389 + Slit2 protein_coding processed_transcript MGP_C57BL6NJ_T0072104.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49149852 49164720 + Slit2 protein_coding processed_transcript MGP_C57BL6NJ_T0072105.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49157757 49209080 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072106.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49164768 49185726 + MGP_C57BL6NJ_P0072106 Slit2 protein_coding protein_coding MGP_C57BL6NJ_T0072107.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49171373 49174207 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072108.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49174771 49188794 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072109.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49182701 49185680 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072110.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49201363 49207931 + Slit2 protein_coding retained_intron MGP_C57BL6NJ_T0072111.1 MGP_C57BL6NJ_G0029969.1 mouse_genomes_project 5 49207909 49228644 + MGP_C57BL6NJ_P0072111 Slit2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072231.1 MGP_C57BL6NJ_G0029992.1 mouse_genomes_project 5 64940348 65019694 + MGP_C57BL6NJ_P0072231 Dthd1 protein_coding protein_coding MGP_C57BL6NJ_T0074268.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124750438 124929047 + MGP_C57BL6NJ_P0074268 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074269.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124757959 124838274 + MGP_C57BL6NJ_P0074269 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074270.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768017 124830307 + Taok3 protein_coding retained_intron MGP_C57BL6NJ_T0074271.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768017 124928905 + MGP_C57BL6NJ_P0074271 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074272.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768024 124929049 + MGP_C57BL6NJ_P0074272 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074273.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768044 124879261 + Taok3 protein_coding retained_intron MGP_C57BL6NJ_T0074274.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768047 124901857 + MGP_C57BL6NJ_P0074274 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074275.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124768070 124822364 + Taok3 protein_coding retained_intron MGP_C57BL6NJ_T0074276.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124838255 124866596 + MGP_C57BL6NJ_P0074276 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0074277.1 MGP_C57BL6NJ_G0030414.1 mouse_genomes_project 5 124878272 124927697 + MGP_C57BL6NJ_P0074277 Taok3 protein_coding protein_coding MGP_C57BL6NJ_T0073686.1 MGP_C57BL6NJ_G0030302.1 mouse_genomes_project 5 116319502 116323761 - MGP_C57BL6NJ_P0073686 Crlf2 protein_coding protein_coding MGP_C57BL6NJ_T0073687.1 MGP_C57BL6NJ_G0030302.1 mouse_genomes_project 5 116319506 116323834 - MGP_C57BL6NJ_P0073687 Crlf2 protein_coding protein_coding MGP_C57BL6NJ_T0073688.1 MGP_C57BL6NJ_G0030302.1 mouse_genomes_project 5 116319508 116321389 - MGP_C57BL6NJ_P0073688 Crlf2 protein_coding protein_coding MGP_C57BL6NJ_T0008302.1 MGP_C57BL6NJ_G0006764.1 mouse_genomes_project 5 45139480 45154253 - Gm42985 lincRNA lincRNA MGP_C57BL6NJ_T0001934.1 MGP_C57BL6NJ_G0001827.1 mouse_genomes_project 5 128575159 128576144 - TEC TEC MGP_C57BL6NJ_T0001740.1 MGP_C57BL6NJ_G0001635.1 mouse_genomes_project 5 58972462 58976414 + TEC TEC MGP_C57BL6NJ_T0004862.1 MGP_C57BL6NJ_G0004202.1 mouse_genomes_project 5 68582322 68610306 + Gm26725 antisense antisense MGP_C57BL6NJ_T0075590.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146962728 146968602 - MGP_C57BL6NJ_P0075590 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0075591.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146962754 146967482 - MGP_C57BL6NJ_P0075591 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0075592.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146962758 146967410 - MGP_C57BL6NJ_P0075592 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0075593.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146962860 146968124 - MGP_C57BL6NJ_P0075593 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0075594.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146962885 146967813 - MGP_C57BL6NJ_P0075594 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0075595.1 MGP_C57BL6NJ_G0030642.1 mouse_genomes_project 5 146963502 146968089 - MGP_C57BL6NJ_P0075595 Znhit1 protein_coding protein_coding MGP_C57BL6NJ_T0071683.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769664 34773212 - MGP_C57BL6NJ_P0071683 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071684.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769668 34773235 - MGP_C57BL6NJ_P0071684 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071685.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769669 34770750 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071686.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769670 34770652 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071687.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769671 34773215 - MGP_C57BL6NJ_P0071687 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071688.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769747 34772830 - MGP_C57BL6NJ_P0071688 Mfsd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071689.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34769937 34770914 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071690.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770017 34772147 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071691.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770336 34771548 - MGP_C57BL6NJ_P0071691 Mfsd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071692.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770653 34771088 - MGP_C57BL6NJ_P0071692 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071693.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770677 34772139 - MGP_C57BL6NJ_P0071693 Mfsd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071694.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770873 34771778 - MGP_C57BL6NJ_P0071694 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071695.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34770954 34773212 - MGP_C57BL6NJ_P0071695 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071696.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771079 34772864 - MGP_C57BL6NJ_P0071696 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071697.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771086 34771646 - MGP_C57BL6NJ_P0071697 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0071698.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771110 34771524 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071699.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771132 34773148 - MGP_C57BL6NJ_P0071699 Mfsd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071700.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771408 34772545 - Mfsd10 protein_coding processed_transcript MGP_C57BL6NJ_T0071701.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34771635 34772558 - Mfsd10 protein_coding processed_transcript MGP_C57BL6NJ_T0071702.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34772051 34773083 - Mfsd10 protein_coding retained_intron MGP_C57BL6NJ_T0071703.1 MGP_C57BL6NJ_G0029899.1 mouse_genomes_project 5 34772616 34773163 - MGP_C57BL6NJ_P0071703 Mfsd10 protein_coding protein_coding MGP_C57BL6NJ_T0004851.1 MGP_C57BL6NJ_G0004193.1 mouse_genomes_project 5 46442343 46447400 + 9630001P10Rik antisense antisense MGP_C57BL6NJ_T0004852.1 MGP_C57BL6NJ_G0004193.1 mouse_genomes_project 5 46442918 46449101 + 9630001P10Rik antisense antisense MGP_C57BL6NJ_T0004853.1 MGP_C57BL6NJ_G0004193.1 mouse_genomes_project 5 46443012 46447723 + 9630001P10Rik antisense antisense MGP_C57BL6NJ_T0008372.1 MGP_C57BL6NJ_G0006820.1 mouse_genomes_project 5 88610387 88614183 + Gm43532 lincRNA lincRNA MGP_C57BL6NJ_T0001733.1 MGP_C57BL6NJ_G0001628.1 mouse_genomes_project 5 53342837 53345713 + TEC TEC MGP_C57BL6NJ_T0001659.1 MGP_C57BL6NJ_G0001555.1 mouse_genomes_project 5 43904255 43906976 + TEC TEC MGP_C57BL6NJ_T0008380.1 MGP_C57BL6NJ_G0006828.1 mouse_genomes_project 5 96035799 96061582 - Gm19619 lincRNA lincRNA MGP_C57BL6NJ_T0001862.1 MGP_C57BL6NJ_G0001755.1 mouse_genomes_project 5 103504281 103505848 - TEC TEC MGP_C57BL6NJ_T0001913.1 MGP_C57BL6NJ_G0001806.1 mouse_genomes_project 5 122851096 122853000 - TEC TEC MGP_C57BL6NJ_T0075566.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146675361 146835453 - MGP_C57BL6NJ_P0075566 Col26a1 protein_coding protein_coding MGP_C57BL6NJ_T0075567.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146675361 146835516 - MGP_C57BL6NJ_P0075567 Col26a1 protein_coding protein_coding MGP_C57BL6NJ_T0075568.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146676357 146678152 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075569.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146676676 146681304 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075570.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146687235 146835242 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075571.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146687954 146692289 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075572.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146694385 146835541 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075573.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146694559 146713988 - Col26a1 protein_coding processed_transcript MGP_C57BL6NJ_T0075574.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146702181 146835075 - Col26a1 protein_coding processed_transcript MGP_C57BL6NJ_T0075575.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146785629 146789469 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0075576.1 MGP_C57BL6NJ_G0030638.1 mouse_genomes_project 5 146786409 146835262 - Col26a1 protein_coding retained_intron MGP_C57BL6NJ_T0004789.1 MGP_C57BL6NJ_G0004143.1 mouse_genomes_project 5 657866 659129 + 2510017J16Rik antisense antisense MGP_C57BL6NJ_T0073530.1 MGP_C57BL6NJ_G0030269.1 mouse_genomes_project 5 114023115 114036937 + MGP_C57BL6NJ_P0073530 protein_coding protein_coding MGP_C57BL6NJ_T0073531.1 MGP_C57BL6NJ_G0030269.1 mouse_genomes_project 5 114023482 114038286 + MGP_C57BL6NJ_P0073531 protein_coding protein_coding MGP_C57BL6NJ_T0073532.1 MGP_C57BL6NJ_G0030269.1 mouse_genomes_project 5 114023513 114032820 + MGP_C57BL6NJ_P0073532 protein_coding protein_coding MGP_C57BL6NJ_T0073533.1 MGP_C57BL6NJ_G0030269.1 mouse_genomes_project 5 114023516 114035938 + MGP_C57BL6NJ_P0073533 protein_coding protein_coding MGP_C57BL6NJ_T0073534.1 MGP_C57BL6NJ_G0030269.1 mouse_genomes_project 5 114029672 114032952 + protein_coding processed_transcript MGP_C57BL6NJ_T0075611.1 MGP_C57BL6NJ_G0030646.1 mouse_genomes_project 5 147049764 147060303 - MGP_C57BL6NJ_P0075611 Serpine1 protein_coding protein_coding MGP_C57BL6NJ_T0075612.1 MGP_C57BL6NJ_G0030646.1 mouse_genomes_project 5 147051405 147060312 - MGP_C57BL6NJ_P0075612 Serpine1 protein_coding protein_coding MGP_C57BL6NJ_T0075613.1 MGP_C57BL6NJ_G0030646.1 mouse_genomes_project 5 147058299 147060312 - Serpine1 protein_coding retained_intron MGP_C57BL6NJ_T0001715.1 MGP_C57BL6NJ_G0001610.1 mouse_genomes_project 5 50158238 50158626 - TEC TEC MGP_C57BL6NJ_T0073744.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117181481 117234141 + MGP_C57BL6NJ_P0073744 Pole protein_coding protein_coding MGP_C57BL6NJ_T0073745.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117181516 117186411 + MGP_C57BL6NJ_P0073745 Pole protein_coding protein_coding MGP_C57BL6NJ_T0073746.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117181552 117203321 + Pole protein_coding retained_intron MGP_C57BL6NJ_T0073747.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117212176 117214304 + Pole protein_coding retained_intron MGP_C57BL6NJ_T0073748.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117222772 117234118 + Pole protein_coding retained_intron MGP_C57BL6NJ_T0073749.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117225779 117234120 + MGP_C57BL6NJ_P0073749 Pole protein_coding protein_coding MGP_C57BL6NJ_T0073750.1 MGP_C57BL6NJ_G0030314.1 mouse_genomes_project 5 117230152 117234103 + Pole protein_coding retained_intron MGP_C57BL6NJ_T0099127.1 MGP_C57BL6NJ_G0037191.1 mouse_genomes_project 5 160804869 160804975 - n-R5s180 rRNA rRNA MGP_C57BL6NJ_T0100435.1 MGP_C57BL6NJ_G0038481.1 mouse_genomes_project 5 34260709 34260812 + Gm25918 snRNA snRNA MGP_C57BL6NJ_T0074528.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130166559 130189641 - MGP_C57BL6NJ_P0074528 Sh2b3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074529.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130166719 130189675 - MGP_C57BL6NJ_P0074529 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074530.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130167383 130179802 - MGP_C57BL6NJ_P0074530 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074531.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130168081 130188946 - MGP_C57BL6NJ_P0074531 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074532.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130168287 130189666 - MGP_C57BL6NJ_P0074532 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074533.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130168361 130189633 - MGP_C57BL6NJ_P0074533 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074534.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130170178 130190462 - MGP_C57BL6NJ_P0074534 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0074535.1 MGP_C57BL6NJ_G0030467.1 mouse_genomes_project 5 130179628 130189106 - MGP_C57BL6NJ_P0074535 Sh2b3 protein_coding protein_coding MGP_C57BL6NJ_T0073863.1 MGP_C57BL6NJ_G0030336.1 mouse_genomes_project 5 119423718 119425951 - MGP_C57BL6NJ_P0073863 Gm6583 protein_coding protein_coding MGP_C57BL6NJ_T0076220.1 MGP_C57BL6NJ_G0030773.1 mouse_genomes_project 5 154697622 154756252 + MGP_C57BL6NJ_P0076220 Rsph10b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0076221.1 MGP_C57BL6NJ_G0030773.1 mouse_genomes_project 5 154697703 154711100 + Rsph10b protein_coding processed_transcript MGP_C57BL6NJ_T0076222.1 MGP_C57BL6NJ_G0030773.1 mouse_genomes_project 5 154697730 154756248 + MGP_C57BL6NJ_P0076222 Rsph10b protein_coding protein_coding MGP_C57BL6NJ_T0076223.1 MGP_C57BL6NJ_G0030773.1 mouse_genomes_project 5 154701751 154711097 + MGP_C57BL6NJ_P0076223 Rsph10b protein_coding protein_coding MGP_C57BL6NJ_T0076224.1 MGP_C57BL6NJ_G0030773.1 mouse_genomes_project 5 154751671 154756057 + Rsph10b protein_coding processed_transcript MGP_C57BL6NJ_T0070507.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2035956 2534640 - MGP_C57BL6NJ_P0070507 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070508.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2035956 2661674 - MGP_C57BL6NJ_P0070508 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070509.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2038404 2533881 - MGP_C57BL6NJ_P0070509 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070510.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2039259 2534737 - MGP_C57BL6NJ_P0070510 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070511.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2124906 2128325 - Cdk14 protein_coding retained_intron MGP_C57BL6NJ_T0070512.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2164847 2534554 - Cdk14 protein_coding retained_intron MGP_C57BL6NJ_T0070513.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2176392 2283317 - Cdk14 protein_coding processed_transcript MGP_C57BL6NJ_T0070514.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2256019 2661701 - Cdk14 protein_coding retained_intron MGP_C57BL6NJ_T0070515.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2349351 2661728 - Cdk14 protein_coding retained_intron MGP_C57BL6NJ_T0070516.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2391021 2661670 - Cdk14 protein_coding retained_intron MGP_C57BL6NJ_T0070517.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2448038 2459834 - Cdk14 protein_coding processed_transcript MGP_C57BL6NJ_T0070518.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2493663 2534864 - MGP_C57BL6NJ_P0070518 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070519.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2493664 2704876 - MGP_C57BL6NJ_P0070519 Cdk14 protein_coding protein_coding MGP_C57BL6NJ_T0070520.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2517805 2534875 - Cdk14 protein_coding processed_transcript MGP_C57BL6NJ_T0070521.1 MGP_C57BL6NJ_G0029701.1 mouse_genomes_project 5 2572412 2661670 - Cdk14 protein_coding processed_transcript MGP_C57BL6NJ_T0073234.1 MGP_C57BL6NJ_G0030204.1 mouse_genomes_project 5 103787763 103814810 + MGP_C57BL6NJ_P0073234 Fgf5 protein_coding protein_coding MGP_C57BL6NJ_T0073235.1 MGP_C57BL6NJ_G0030204.1 mouse_genomes_project 5 103787991 103813251 + MGP_C57BL6NJ_P0073235 Fgf5 protein_coding protein_coding MGP_C57BL6NJ_T0072950.1 MGP_C57BL6NJ_G0030133.1 mouse_genomes_project 5 92776070 92776147 - MGP_C57BL6NJ_P0072950 Gm11115 protein_coding protein_coding MGP_C57BL6NJ_T0072952.1 MGP_C57BL6NJ_G0030135.1 mouse_genomes_project 5 93012447 93023435 + MGP_C57BL6NJ_P0072952 Amtn protein_coding protein_coding MGP_C57BL6NJ_T0103227.1 MGP_C57BL6NJ_G0041021.1 mouse_genomes_project 5 163230607 163243524 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001966.1 MGP_C57BL6NJ_G0001858.1 mouse_genomes_project 5 134321952 134324790 + TEC TEC MGP_C57BL6NJ_T0011861.1 MGP_C57BL6NJ_G0009946.1 mouse_genomes_project 5 106135658 106135732 + Gm27553 misc_RNA misc_RNA MGP_C57BL6NJ_T0015349.1 MGP_C57BL6NJ_G0013394.1 mouse_genomes_project 5 45077617 45079511 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071159.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344748 30355052 + MGP_C57BL6NJ_P0071159 Slc35f6 protein_coding protein_coding MGP_C57BL6NJ_T0071160.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344760 30350092 + Slc35f6 protein_coding retained_intron MGP_C57BL6NJ_T0071161.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344774 30354999 + MGP_C57BL6NJ_P0071161 Slc35f6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071162.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344783 30352908 + Slc35f6 protein_coding retained_intron MGP_C57BL6NJ_T0071163.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344819 30354999 + MGP_C57BL6NJ_P0071163 Slc35f6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071164.1 MGP_C57BL6NJ_G0029823.1 mouse_genomes_project 5 30344829 30354657 + MGP_C57BL6NJ_P0071164 Slc35f6 protein_coding protein_coding MGP_C57BL6NJ_T0001698.1 MGP_C57BL6NJ_G0001594.1 mouse_genomes_project 5 49720667 49721968 - TEC TEC MGP_C57BL6NJ_T0010991.1 MGP_C57BL6NJ_G0009076.1 mouse_genomes_project 5 153888292 153888418 + Gm44405 miRNA miRNA MGP_C57BL6NJ_T0001609.1 MGP_C57BL6NJ_G0001508.1 mouse_genomes_project 5 22525514 22526295 + TEC TEC MGP_C57BL6NJ_T0076413.1 MGP_C57BL6NJ_G0030823.1 mouse_genomes_project 5 158515201 158521068 + MGP_C57BL6NJ_P0076413 Pdx1 protein_coding protein_coding MGP_C57BL6NJ_T0001611.1 MGP_C57BL6NJ_G0001510.1 mouse_genomes_project 5 23350543 23353138 + TEC TEC MGP_C57BL6NJ_T0010974.1 MGP_C57BL6NJ_G0009059.1 mouse_genomes_project 5 145543043 145543127 - Mir7034 miRNA miRNA MGP_C57BL6NJ_T0072988.1 MGP_C57BL6NJ_G0030145.1 mouse_genomes_project 5 94106827 94140128 - MGP_C57BL6NJ_P0072988 Gc protein_coding protein_coding MGP_C57BL6NJ_T0072989.1 MGP_C57BL6NJ_G0030145.1 mouse_genomes_project 5 94111188 94118150 - MGP_C57BL6NJ_P0072989 Gc protein_coding protein_coding MGP_C57BL6NJ_T0015371.1 MGP_C57BL6NJ_G0013416.1 mouse_genomes_project 5 57564386 57564699 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073334.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106557260 106565590 + MGP_C57BL6NJ_P0073334 Mrps18c protein_coding protein_coding MGP_C57BL6NJ_T0073335.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106557376 106558323 + Mrps18c protein_coding retained_intron MGP_C57BL6NJ_T0073336.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106557376 106565587 + MGP_C57BL6NJ_P0073336 Mrps18c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073337.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106557380 106565590 + MGP_C57BL6NJ_P0073337 Mrps18c protein_coding protein_coding MGP_C57BL6NJ_T0073338.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106557403 106563753 + MGP_C57BL6NJ_P0073338 Mrps18c protein_coding protein_coding MGP_C57BL6NJ_T0073339.1 MGP_C57BL6NJ_G0030223.1 mouse_genomes_project 5 106563254 106565588 + Mrps18c protein_coding retained_intron MGP_C57BL6NJ_T0010990.1 MGP_C57BL6NJ_G0009075.1 mouse_genomes_project 5 151628013 151628092 + Gm26113 miRNA miRNA MGP_C57BL6NJ_T0015383.1 MGP_C57BL6NJ_G0013428.1 mouse_genomes_project 5 62062708 62063342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102281.1 MGP_C57BL6NJ_G0040263.1 mouse_genomes_project 5 126287672 126304915 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102282.1 MGP_C57BL6NJ_G0040263.1 mouse_genomes_project 5 126304254 126304732 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0076416.1 MGP_C57BL6NJ_G0030826.1 mouse_genomes_project 5 158579295 158653527 - MGP_C57BL6NJ_P0076416 Flt3 protein_coding protein_coding MGP_C57BL6NJ_T0076417.1 MGP_C57BL6NJ_G0030826.1 mouse_genomes_project 5 158612591 158653527 - Flt3 protein_coding processed_transcript MGP_C57BL6NJ_T0072949.1 MGP_C57BL6NJ_G0030132.1 mouse_genomes_project 5 92734778 92735742 - MGP_C57BL6NJ_P0072949 Gm11116 protein_coding protein_coding MGP_C57BL6NJ_T0001907.1 MGP_C57BL6NJ_G0001800.1 mouse_genomes_project 5 120486855 120488150 + TEC TEC MGP_C57BL6NJ_T0074334.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126370464 126535662 + Med13l protein_coding retained_intron MGP_C57BL6NJ_T0074335.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126370504 126583512 + MGP_C57BL6NJ_P0074335 Med13l protein_coding protein_coding MGP_C57BL6NJ_T0074336.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126370524 126581990 + MGP_C57BL6NJ_P0074336 Med13l protein_coding protein_coding MGP_C57BL6NJ_T0074337.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126372656 126405932 + Med13l protein_coding processed_transcript MGP_C57BL6NJ_T0074338.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126565570 126581990 + Med13l protein_coding retained_intron MGP_C57BL6NJ_T0074339.1 MGP_C57BL6NJ_G0030427.1 mouse_genomes_project 5 126568460 126581990 + Med13l protein_coding retained_intron MGP_C57BL6NJ_T0010952.1 MGP_C57BL6NJ_G0009037.1 mouse_genomes_project 5 113373931 113374030 - Gm27527 miRNA miRNA MGP_C57BL6NJ_T0008525.1 MGP_C57BL6NJ_G0006928.1 mouse_genomes_project 5 127776580 127780049 - Gm43050 lincRNA lincRNA MGP_C57BL6NJ_T0008526.1 MGP_C57BL6NJ_G0006928.1 mouse_genomes_project 5 127779158 127779920 - Gm43050 lincRNA lincRNA MGP_C57BL6NJ_T0015476.1 MGP_C57BL6NJ_G0013521.1 mouse_genomes_project 5 106248351 106248785 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073070.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96862855 96908446 - MGP_C57BL6NJ_P0073070 Cdkl2 protein_coding protein_coding MGP_C57BL6NJ_T0073071.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96862855 96908447 - MGP_C57BL6NJ_P0073071 Cdkl2 protein_coding protein_coding MGP_C57BL6NJ_T0073072.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96864585 96908101 - MGP_C57BL6NJ_P0073072 Cdkl2 protein_coding protein_coding MGP_C57BL6NJ_T0073073.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96864604 96908077 - MGP_C57BL6NJ_P0073073 Cdkl2 protein_coding protein_coding MGP_C57BL6NJ_T0073074.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96864817 96876557 - Cdkl2 protein_coding retained_intron MGP_C57BL6NJ_T0073075.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96880969 96890790 - MGP_C57BL6NJ_P0073075 Cdkl2 protein_coding protein_coding MGP_C57BL6NJ_T0073076.1 MGP_C57BL6NJ_G0030171.1 mouse_genomes_project 5 96907671 96909288 - Cdkl2 protein_coding TEC MGP_C57BL6NJ_T0101740.1 MGP_C57BL6NJ_G0039786.1 mouse_genomes_project 5 66359193 66359327 + Gm22559 snoRNA snoRNA MGP_C57BL6NJ_T0075139.1 MGP_C57BL6NJ_G0030565.1 mouse_genomes_project 5 139118689 139132035 + MGP_C57BL6NJ_P0075139 Zbed5 protein_coding protein_coding MGP_C57BL6NJ_T0075140.1 MGP_C57BL6NJ_G0030565.1 mouse_genomes_project 5 139118734 139122461 + Zbed5 protein_coding retained_intron MGP_C57BL6NJ_T0075141.1 MGP_C57BL6NJ_G0030565.1 mouse_genomes_project 5 139118744 139130237 + MGP_C57BL6NJ_P0075141 Zbed5 protein_coding protein_coding MGP_C57BL6NJ_T0072960.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93201365 93289860 + MGP_C57BL6NJ_P0072960 Rufy3 protein_coding protein_coding MGP_C57BL6NJ_T0072961.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93201365 93279886 + MGP_C57BL6NJ_P0072961 Rufy3 protein_coding protein_coding MGP_C57BL6NJ_T0072962.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93223061 93278118 + MGP_C57BL6NJ_P0072962 Rufy3 protein_coding protein_coding MGP_C57BL6NJ_T0072963.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93223084 93279887 + MGP_C57BL6NJ_P0072963 Rufy3 protein_coding protein_coding MGP_C57BL6NJ_T0072964.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93223125 93225461 + Rufy3 protein_coding retained_intron MGP_C57BL6NJ_T0072965.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93223126 93252405 + Rufy3 protein_coding retained_intron MGP_C57BL6NJ_T0072966.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93223342 93278119 + MGP_C57BL6NJ_P0072966 Rufy3 protein_coding protein_coding MGP_C57BL6NJ_T0072967.1 MGP_C57BL6NJ_G0030140.1 mouse_genomes_project 5 93283881 93285509 + Rufy3 protein_coding retained_intron MGP_C57BL6NJ_T0015320.1 MGP_C57BL6NJ_G0013365.1 mouse_genomes_project 5 32368761 32369087 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072257.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67071905 67103045 + MGP_C57BL6NJ_P0072257 Klf3 protein_coding protein_coding MGP_C57BL6NJ_T0072258.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67072094 67093258 + Klf3 protein_coding retained_intron MGP_C57BL6NJ_T0072259.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67072139 67092321 + Klf3 protein_coding processed_transcript MGP_C57BL6NJ_T0072260.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67082487 67099626 + MGP_C57BL6NJ_P0072260 Klf3 protein_coding protein_coding MGP_C57BL6NJ_T0072261.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67082488 67089468 + Klf3 protein_coding retained_intron MGP_C57BL6NJ_T0072262.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67082532 67092392 + MGP_C57BL6NJ_P0072262 Klf3 protein_coding protein_coding MGP_C57BL6NJ_T0072263.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67085998 67095573 + Klf3 protein_coding retained_intron MGP_C57BL6NJ_T0072264.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67092496 67097311 + MGP_C57BL6NJ_P0072264 Klf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072265.1 MGP_C57BL6NJ_G0029998.1 mouse_genomes_project 5 67096952 67099694 + MGP_C57BL6NJ_P0072265 Klf3 protein_coding protein_coding MGP_C57BL6NJ_T0072514.1 MGP_C57BL6NJ_G0030041.1 mouse_genomes_project 5 75051550 75063167 - MGP_C57BL6NJ_P0072514 Commd8 protein_coding protein_coding MGP_C57BL6NJ_T0072515.1 MGP_C57BL6NJ_G0030041.1 mouse_genomes_project 5 75052160 75063142 - MGP_C57BL6NJ_P0072515 Commd8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072516.1 MGP_C57BL6NJ_G0030041.1 mouse_genomes_project 5 75053986 75056114 - Commd8 protein_coding retained_intron MGP_C57BL6NJ_T0072517.1 MGP_C57BL6NJ_G0030041.1 mouse_genomes_project 5 75054851 75060698 - Commd8 protein_coding processed_transcript MGP_C57BL6NJ_T0072518.1 MGP_C57BL6NJ_G0030041.1 mouse_genomes_project 5 75055937 75063134 - MGP_C57BL6NJ_P0072518 Commd8 protein_coding protein_coding MGP_C57BL6NJ_T0001888.1 MGP_C57BL6NJ_G0001781.1 mouse_genomes_project 5 114917237 114918617 - TEC TEC MGP_C57BL6NJ_T0103229.1 MGP_C57BL6NJ_G0041023.1 mouse_genomes_project 5 163358668 163358756 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015344.1 MGP_C57BL6NJ_G0013389.1 mouse_genomes_project 5 42476210 42477102 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073058.1 MGP_C57BL6NJ_G0030167.1 mouse_genomes_project 5 96145750 96197669 - MGP_C57BL6NJ_P0073058 Btc protein_coding protein_coding MGP_C57BL6NJ_T0073059.1 MGP_C57BL6NJ_G0030167.1 mouse_genomes_project 5 96145878 96197497 - Btc protein_coding retained_intron MGP_C57BL6NJ_T0073060.1 MGP_C57BL6NJ_G0030167.1 mouse_genomes_project 5 96147408 96197535 - MGP_C57BL6NJ_P0073060 Btc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073061.1 MGP_C57BL6NJ_G0030167.1 mouse_genomes_project 5 96154279 96167132 - Btc protein_coding processed_transcript MGP_C57BL6NJ_T0071061.1 MGP_C57BL6NJ_G0029802.1 mouse_genomes_project 5 27992484 28007939 - MGP_C57BL6NJ_P0071061 Shh protein_coding protein_coding MGP_C57BL6NJ_T0001861.1 MGP_C57BL6NJ_G0001754.1 mouse_genomes_project 5 102499847 102500475 + TEC TEC MGP_C57BL6NJ_T0072288.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67575054 67650762 - MGP_C57BL6NJ_P0072288 Rfc1 protein_coding protein_coding MGP_C57BL6NJ_T0072289.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67575056 67650819 - MGP_C57BL6NJ_P0072289 Rfc1 protein_coding protein_coding MGP_C57BL6NJ_T0072290.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67575056 67650868 - MGP_C57BL6NJ_P0072290 Rfc1 protein_coding protein_coding MGP_C57BL6NJ_T0072291.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67575806 67650816 - MGP_C57BL6NJ_P0072291 Rfc1 protein_coding protein_coding MGP_C57BL6NJ_T0072292.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67576280 67582235 - MGP_C57BL6NJ_P0072292 Rfc1 protein_coding protein_coding MGP_C57BL6NJ_T0072293.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67577450 67586799 - Rfc1 protein_coding retained_intron MGP_C57BL6NJ_T0072294.1 MGP_C57BL6NJ_G0030005.1 mouse_genomes_project 5 67623783 67650811 - Rfc1 protein_coding retained_intron MGP_C57BL6NJ_T0015550.1 MGP_C57BL6NJ_G0013595.1 mouse_genomes_project 5 134731137 134731926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100491.1 MGP_C57BL6NJ_G0038537.1 mouse_genomes_project 5 135317816 135317923 - Gm23151 snRNA snRNA MGP_C57BL6NJ_T0102273.1 MGP_C57BL6NJ_G0040258.1 mouse_genomes_project 5 79434542 79435012 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0008585.1 MGP_C57BL6NJ_G0006961.1 mouse_genomes_project 5 141984018 141985177 + Gm28616 lincRNA lincRNA MGP_C57BL6NJ_T0076287.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156032759 156049312 + MGP_C57BL6NJ_P0076287 Arpc1b protein_coding protein_coding MGP_C57BL6NJ_T0076288.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156032802 156041342 + Arpc1b protein_coding processed_transcript MGP_C57BL6NJ_T0076289.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156032845 156042802 + Arpc1b protein_coding retained_intron MGP_C57BL6NJ_T0076290.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156032856 156046620 + MGP_C57BL6NJ_P0076290 Arpc1b protein_coding protein_coding MGP_C57BL6NJ_T0076291.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156032860 156041182 + MGP_C57BL6NJ_P0076291 Arpc1b protein_coding protein_coding MGP_C57BL6NJ_T0076292.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156042225 156045333 + MGP_C57BL6NJ_P0076292 Arpc1b protein_coding protein_coding MGP_C57BL6NJ_T0076293.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156042520 156044253 + Arpc1b protein_coding retained_intron MGP_C57BL6NJ_T0076294.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156042520 156045479 + Arpc1b protein_coding processed_transcript MGP_C57BL6NJ_T0076295.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156044437 156045877 + Arpc1b protein_coding retained_intron MGP_C57BL6NJ_T0076296.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156045304 156050319 + MGP_C57BL6NJ_P0076296 Arpc1b protein_coding protein_coding MGP_C57BL6NJ_T0076297.1 MGP_C57BL6NJ_G0030787.1 mouse_genomes_project 5 156045769 156046635 + Arpc1b protein_coding retained_intron MGP_C57BL6NJ_T0002035.1 MGP_C57BL6NJ_G0001926.1 mouse_genomes_project 5 154159737 154162479 + TEC TEC MGP_C57BL6NJ_T0010945.1 MGP_C57BL6NJ_G0009030.1 mouse_genomes_project 5 95562465 95562535 - Gm24322 miRNA miRNA MGP_C57BL6NJ_T0074244.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123518057 123528935 - MGP_C57BL6NJ_P0074244 Prkab1 protein_coding protein_coding MGP_C57BL6NJ_T0074245.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123518061 123528981 - MGP_C57BL6NJ_P0074245 Prkab1 protein_coding protein_coding MGP_C57BL6NJ_T0074246.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123518638 123519633 - Prkab1 protein_coding retained_intron MGP_C57BL6NJ_T0074247.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123518787 123522683 - Prkab1 protein_coding retained_intron MGP_C57BL6NJ_T0074248.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123518906 123528829 - MGP_C57BL6NJ_P0074248 Prkab1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074249.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123519121 123528924 - MGP_C57BL6NJ_P0074249 Prkab1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074250.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123522286 123528870 - Prkab1 protein_coding retained_intron MGP_C57BL6NJ_T0074251.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123524178 123526119 - Prkab1 protein_coding retained_intron MGP_C57BL6NJ_T0074252.1 MGP_C57BL6NJ_G0030408.1 mouse_genomes_project 5 123528371 123528932 - Prkab1 protein_coding retained_intron MGP_C57BL6NJ_T0073437.1 MGP_C57BL6NJ_G0030247.1 mouse_genomes_project 5 110544106 110558366 + MGP_C57BL6NJ_P0073437 BC005561 protein_coding protein_coding MGP_C57BL6NJ_T0015401.1 MGP_C57BL6NJ_G0013446.1 mouse_genomes_project 5 68827819 68828087 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010925.1 MGP_C57BL6NJ_G0009010.1 mouse_genomes_project 5 36518708 36518767 + Mir7689 miRNA miRNA MGP_C57BL6NJ_T0074832.1 MGP_C57BL6NJ_G0030511.1 mouse_genomes_project 5 132627667 132649322 + MGP_C57BL6NJ_P0074832 Denr protein_coding protein_coding MGP_C57BL6NJ_T0074833.1 MGP_C57BL6NJ_G0030511.1 mouse_genomes_project 5 132627761 132629001 + Denr protein_coding processed_transcript MGP_C57BL6NJ_T0074834.1 MGP_C57BL6NJ_G0030511.1 mouse_genomes_project 5 132627767 132631729 + Denr protein_coding retained_intron MGP_C57BL6NJ_T0074835.1 MGP_C57BL6NJ_G0030511.1 mouse_genomes_project 5 132627774 132628981 + Denr protein_coding retained_intron MGP_C57BL6NJ_T0074836.1 MGP_C57BL6NJ_G0030511.1 mouse_genomes_project 5 132627981 132647620 + MGP_C57BL6NJ_P0074836 Denr protein_coding protein_coding MGP_C57BL6NJ_T0070781.1 MGP_C57BL6NJ_G0029748.1 mouse_genomes_project 5 20442941 20617414 - MGP_C57BL6NJ_P0070781 Fbxl13 protein_coding protein_coding MGP_C57BL6NJ_T0070782.1 MGP_C57BL6NJ_G0029748.1 mouse_genomes_project 5 20449294 20617396 - Fbxl13 protein_coding retained_intron MGP_C57BL6NJ_T0070783.1 MGP_C57BL6NJ_G0029748.1 mouse_genomes_project 5 20480187 20617366 - MGP_C57BL6NJ_P0070783 Fbxl13 protein_coding protein_coding MGP_C57BL6NJ_T0070786.1 MGP_C57BL6NJ_G0029748.1 mouse_genomes_project 5 20543547 20565817 - Fbxl13 protein_coding processed_transcript MGP_C57BL6NJ_T0070787.1 MGP_C57BL6NJ_G0029748.1 mouse_genomes_project 5 20615354 20617443 - Fbxl13 protein_coding retained_intron MGP_C57BL6NJ_T0074349.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128076135 128161819 + MGP_C57BL6NJ_P0074349 Rbm19 protein_coding protein_coding MGP_C57BL6NJ_T0074350.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128076187 128078652 + Rbm19 protein_coding retained_intron MGP_C57BL6NJ_T0074351.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128076190 128161817 + MGP_C57BL6NJ_P0074351 Rbm19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074352.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128078266 128079964 + Rbm19 protein_coding retained_intron MGP_C57BL6NJ_T0074353.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128116468 128161809 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074354.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128122300 128161031 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074355.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128129740 128149094 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074356.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128131334 128161815 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074357.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128134503 128160828 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074358.1 MGP_C57BL6NJ_G0030430.1 mouse_genomes_project 5 128137128 128160807 + Rbm19 protein_coding processed_transcript MGP_C57BL6NJ_T0074394.1 MGP_C57BL6NJ_G0030440.1 mouse_genomes_project 5 128668166 128674067 - MGP_C57BL6NJ_P0074394 Cfap73 protein_coding protein_coding MGP_C57BL6NJ_T0076347.1 MGP_C57BL6NJ_G0030802.1 mouse_genomes_project 5 157026499 157049800 - MGP_C57BL6NJ_P0076347 Cyp3a25 protein_coding protein_coding MGP_C57BL6NJ_T0001865.1 MGP_C57BL6NJ_G0001758.1 mouse_genomes_project 5 106144647 106146482 + TEC TEC MGP_C57BL6NJ_T0015552.1 MGP_C57BL6NJ_G0013597.1 mouse_genomes_project 5 139455222 139455624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073168.1 MGP_C57BL6NJ_G0030187.1 mouse_genomes_project 5 97994439 97998339 - MGP_C57BL6NJ_P0073168 Sowahb protein_coding protein_coding MGP_C57BL6NJ_T0004943.1 MGP_C57BL6NJ_G0004259.1 mouse_genomes_project 5 121045994 121046510 + Gm17122 antisense antisense MGP_C57BL6NJ_T0071507.1 MGP_C57BL6NJ_G0029873.1 mouse_genomes_project 5 33244263 33267015 - Spon2 protein_coding retained_intron MGP_C57BL6NJ_T0071508.1 MGP_C57BL6NJ_G0029873.1 mouse_genomes_project 5 33264992 33269521 - MGP_C57BL6NJ_P0071508 Spon2 protein_coding protein_coding MGP_C57BL6NJ_T0071509.1 MGP_C57BL6NJ_G0029873.1 mouse_genomes_project 5 33264999 33269251 - Spon2 protein_coding retained_intron MGP_C57BL6NJ_T0071510.1 MGP_C57BL6NJ_G0029873.1 mouse_genomes_project 5 33265000 33267026 - Spon2 protein_coding retained_intron MGP_C57BL6NJ_T0071511.1 MGP_C57BL6NJ_G0029873.1 mouse_genomes_project 5 33267494 33269261 - MGP_C57BL6NJ_P0071511 Spon2 protein_coding protein_coding MGP_C57BL6NJ_T0103205.1 MGP_C57BL6NJ_G0040999.1 mouse_genomes_project 5 91935124 91938887 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0072393.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68766855 68782953 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0072394.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68766877 69101284 - MGP_C57BL6NJ_P0072394 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072395.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68766880 69101310 - MGP_C57BL6NJ_P0072395 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072396.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68766880 69101207 - MGP_C57BL6NJ_P0072396 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072397.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68766992 69101189 - MGP_C57BL6NJ_P0072397 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072398.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68768813 68966281 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0072399.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68770024 68808552 - Apbb2 protein_coding processed_transcript MGP_C57BL6NJ_T0072400.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68770040 69101197 - MGP_C57BL6NJ_P0072400 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072401.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68770040 69101197 - MGP_C57BL6NJ_P0072401 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072402.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68770357 68966280 - MGP_C57BL6NJ_P0072402 Apbb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072403.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68775735 68808353 - Apbb2 protein_coding processed_transcript MGP_C57BL6NJ_T0072404.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68870307 69101209 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0072405.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68870307 69101196 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0072406.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925246 69101166 - MGP_C57BL6NJ_P0072406 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072407.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925259 68989905 - MGP_C57BL6NJ_P0072407 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072408.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925288 69101197 - MGP_C57BL6NJ_P0072408 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072409.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925492 69101300 - MGP_C57BL6NJ_P0072409 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072410.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925525 68989912 - MGP_C57BL6NJ_P0072410 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072411.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68925531 69026113 - MGP_C57BL6NJ_P0072411 Apbb2 protein_coding protein_coding MGP_C57BL6NJ_T0072412.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 68934964 69101198 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0072413.1 MGP_C57BL6NJ_G0030020.1 mouse_genomes_project 5 69018650 69101214 - Apbb2 protein_coding retained_intron MGP_C57BL6NJ_T0001868.1 MGP_C57BL6NJ_G0001761.1 mouse_genomes_project 5 106664604 106666954 + TEC TEC MGP_C57BL6NJ_T0001819.1 MGP_C57BL6NJ_G0001713.1 mouse_genomes_project 5 75863613 75865969 - TEC TEC MGP_C57BL6NJ_T0001820.1 MGP_C57BL6NJ_G0001713.1 mouse_genomes_project 5 75865322 75865969 - TEC pseudogene MGP_C57BL6NJ_T0008603.1 MGP_C57BL6NJ_G0006976.1 mouse_genomes_project 5 149839990 149861629 + 4930500L23Rik lincRNA lincRNA MGP_C57BL6NJ_T0073095.1 MGP_C57BL6NJ_G0030175.1 mouse_genomes_project 5 97103642 97145282 - MGP_C57BL6NJ_P0073095 Ppef2 protein_coding protein_coding MGP_C57BL6NJ_T0073096.1 MGP_C57BL6NJ_G0030175.1 mouse_genomes_project 5 97103652 97107775 - Ppef2 protein_coding processed_transcript MGP_C57BL6NJ_T0073097.1 MGP_C57BL6NJ_G0030175.1 mouse_genomes_project 5 97103937 97142163 - MGP_C57BL6NJ_P0073097 Ppef2 protein_coding protein_coding MGP_C57BL6NJ_T0001792.1 MGP_C57BL6NJ_G0001686.1 mouse_genomes_project 5 68999258 69001184 - TEC TEC MGP_C57BL6NJ_T0001712.1 MGP_C57BL6NJ_G0001607.1 mouse_genomes_project 5 50017190 50020087 - TEC TEC MGP_C57BL6NJ_T0070866.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945320 22947613 + MGP_C57BL6NJ_P0070866 Rint1 protein_coding protein_coding MGP_C57BL6NJ_T0070867.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945320 22983844 + MGP_C57BL6NJ_P0070867 Rint1 protein_coding protein_coding MGP_C57BL6NJ_T0070868.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945321 22951504 + MGP_C57BL6NJ_P0070868 Rint1 protein_coding protein_coding MGP_C57BL6NJ_T0070869.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945324 22983772 + MGP_C57BL6NJ_P0070869 Rint1 protein_coding protein_coding MGP_C57BL6NJ_T0070870.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945328 22983843 + Rint1 protein_coding retained_intron MGP_C57BL6NJ_T0070871.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945330 22947638 + Rint1 protein_coding retained_intron MGP_C57BL6NJ_T0070872.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22945350 22956921 + Rint1 protein_coding processed_transcript MGP_C57BL6NJ_T0070873.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22965380 22969310 + Rint1 protein_coding retained_intron MGP_C57BL6NJ_T0070874.1 MGP_C57BL6NJ_G0029762.1 mouse_genomes_project 5 22970905 22974865 + Rint1 protein_coding processed_transcript MGP_C57BL6NJ_T0001638.1 MGP_C57BL6NJ_G0001534.1 mouse_genomes_project 5 32602398 32603315 - TEC TEC MGP_C57BL6NJ_T0001730.1 MGP_C57BL6NJ_G0001625.1 mouse_genomes_project 5 53174619 53177064 - TEC TEC MGP_C57BL6NJ_T0075509.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937188 145966773 + MGP_C57BL6NJ_P0075509 Rasa4 protein_coding protein_coding MGP_C57BL6NJ_T0075510.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937226 145966773 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075511.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937270 145966768 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075512.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937270 145964874 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075513.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937271 145948783 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075514.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937290 145966768 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075515.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937304 145966773 + MGP_C57BL6NJ_P0075515 Rasa4 protein_coding protein_coding MGP_C57BL6NJ_T0075516.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145937361 145962654 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075517.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145938342 145946600 + Rasa4 protein_coding processed_transcript MGP_C57BL6NJ_T0075518.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145946437 145947907 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0075519.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145950905 145957438 + MGP_C57BL6NJ_P0075519 Rasa4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075520.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145959036 145961176 + MGP_C57BL6NJ_P0075520 Rasa4 protein_coding protein_coding MGP_C57BL6NJ_T0075521.1 MGP_C57BL6NJ_G0030630.1 mouse_genomes_project 5 145965844 145966443 + Rasa4 protein_coding retained_intron MGP_C57BL6NJ_T0001624.1 MGP_C57BL6NJ_G0001522.1 mouse_genomes_project 5 30631228 30633581 + TEC TEC MGP_C57BL6NJ_T0073349.1 MGP_C57BL6NJ_G0030225.1 mouse_genomes_project 5 106617485 106618583 + MGP_C57BL6NJ_P0073349 Agpat9 protein_coding protein_coding MGP_C57BL6NJ_T0073350.1 MGP_C57BL6NJ_G0030225.1 mouse_genomes_project 5 106617902 106679555 + MGP_C57BL6NJ_P0073350 Agpat9 protein_coding protein_coding MGP_C57BL6NJ_T0073351.1 MGP_C57BL6NJ_G0030225.1 mouse_genomes_project 5 106617991 106679555 + MGP_C57BL6NJ_P0073351 Agpat9 protein_coding protein_coding MGP_C57BL6NJ_T0073352.1 MGP_C57BL6NJ_G0030225.1 mouse_genomes_project 5 106618136 106679558 + MGP_C57BL6NJ_P0073352 Agpat9 protein_coding protein_coding MGP_C57BL6NJ_T0073353.1 MGP_C57BL6NJ_G0030225.1 mouse_genomes_project 5 106618189 106618623 + MGP_C57BL6NJ_P0073353 Agpat9 protein_coding protein_coding MGP_C57BL6NJ_T0001782.1 MGP_C57BL6NJ_G0001676.1 mouse_genomes_project 5 68298330 68303823 + TEC TEC MGP_C57BL6NJ_T0074254.1 MGP_C57BL6NJ_G0030410.1 mouse_genomes_project 5 123642385 123821066 - MGP_C57BL6NJ_P0074254 Ccdc60 protein_coding protein_coding MGP_C57BL6NJ_T0074255.1 MGP_C57BL6NJ_G0030410.1 mouse_genomes_project 5 123690717 123821044 - MGP_C57BL6NJ_P0074255 Ccdc60 protein_coding protein_coding MGP_C57BL6NJ_T0072232.1 MGP_C57BL6NJ_G0029993.1 mouse_genomes_project 5 65845759 65985807 + Nwd2 protein_coding retained_intron MGP_C57BL6NJ_T0072233.1 MGP_C57BL6NJ_G0029993.1 mouse_genomes_project 5 65845765 66004909 + MGP_C57BL6NJ_P0072233 Nwd2 protein_coding protein_coding MGP_C57BL6NJ_T0072234.1 MGP_C57BL6NJ_G0029993.1 mouse_genomes_project 5 65845990 65995072 + MGP_C57BL6NJ_P0072234 Nwd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072235.1 MGP_C57BL6NJ_G0029993.1 mouse_genomes_project 5 65994886 66004909 + MGP_C57BL6NJ_P0072235 Nwd2 protein_coding protein_coding MGP_C57BL6NJ_T0073340.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106566310 106583259 - MGP_C57BL6NJ_P0073340 Fam175a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073341.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106566310 106583284 - MGP_C57BL6NJ_P0073341 Fam175a protein_coding protein_coding MGP_C57BL6NJ_T0073342.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106566310 106583262 - MGP_C57BL6NJ_P0073342 Fam175a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073343.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106566310 106583259 - MGP_C57BL6NJ_P0073343 Fam175a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073344.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106566321 106583259 - MGP_C57BL6NJ_P0073344 Fam175a protein_coding protein_coding MGP_C57BL6NJ_T0073345.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106567455 106568445 - Fam175a protein_coding retained_intron MGP_C57BL6NJ_T0073346.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106572112 106583260 - MGP_C57BL6NJ_P0073346 Fam175a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073347.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106580071 106583266 - Fam175a protein_coding retained_intron MGP_C57BL6NJ_T0073348.1 MGP_C57BL6NJ_G0030224.1 mouse_genomes_project 5 106580678 106583259 - Fam175a protein_coding retained_intron MGP_C57BL6NJ_T0075401.1 MGP_C57BL6NJ_G0030607.1 mouse_genomes_project 5 144900232 144913782 + MGP_C57BL6NJ_P0075401 Bcl7b protein_coding protein_coding MGP_C57BL6NJ_T0075402.1 MGP_C57BL6NJ_G0030607.1 mouse_genomes_project 5 144900338 144905398 + MGP_C57BL6NJ_P0075402 Bcl7b protein_coding protein_coding MGP_C57BL6NJ_T0075403.1 MGP_C57BL6NJ_G0030607.1 mouse_genomes_project 5 144900361 144913758 + MGP_C57BL6NJ_P0075403 Bcl7b protein_coding protein_coding MGP_C57BL6NJ_T0075404.1 MGP_C57BL6NJ_G0030607.1 mouse_genomes_project 5 144900394 144912522 + MGP_C57BL6NJ_P0075404 Bcl7b protein_coding protein_coding MGP_C57BL6NJ_T0075405.1 MGP_C57BL6NJ_G0030607.1 mouse_genomes_project 5 144911513 144913052 + Bcl7b protein_coding retained_intron MGP_C57BL6NJ_T0099458.1 MGP_C57BL6NJ_G0037515.1 mouse_genomes_project 5 2107736 2109655 - Gm43111 sense_intronic sense_intronic MGP_C57BL6NJ_T0074165.1 MGP_C57BL6NJ_G0030398.1 mouse_genomes_project 5 122760619 122764767 - MGP_C57BL6NJ_P0074165 Cox6a1 protein_coding protein_coding MGP_C57BL6NJ_T0074166.1 MGP_C57BL6NJ_G0030398.1 mouse_genomes_project 5 122760634 122764700 - Cox6a1 protein_coding retained_intron MGP_C57BL6NJ_T0015390.1 MGP_C57BL6NJ_G0013435.1 mouse_genomes_project 5 64105387 64106003 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001670.1 MGP_C57BL6NJ_G0001566.1 mouse_genomes_project 5 44927447 44928262 + TEC TEC MGP_C57BL6NJ_T0071809.1 MGP_C57BL6NJ_G0029918.1 mouse_genomes_project 5 36427633 36430181 + MGP_C57BL6NJ_P0071809 Psapl1 protein_coding protein_coding MGP_C57BL6NJ_T0004794.1 MGP_C57BL6NJ_G0004148.1 mouse_genomes_project 5 12509918 12529126 - Gm4128 antisense antisense MGP_C57BL6NJ_T0099474.1 MGP_C57BL6NJ_G0037531.1 mouse_genomes_project 5 117095099 117095807 + Gm43138 sense_intronic sense_intronic MGP_C57BL6NJ_T0072941.1 MGP_C57BL6NJ_G0030128.1 mouse_genomes_project 5 92593768 92638048 + MGP_C57BL6NJ_P0072941 Gm28434 protein_coding protein_coding MGP_C57BL6NJ_T0001776.1 MGP_C57BL6NJ_G0001670.1 mouse_genomes_project 5 68029451 68031003 - TEC TEC MGP_C57BL6NJ_T0015529.1 MGP_C57BL6NJ_G0013574.1 mouse_genomes_project 5 122219965 122220310 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008515.1 MGP_C57BL6NJ_G0006919.1 mouse_genomes_project 5 126756324 126766292 + Gm43342 lincRNA lincRNA MGP_C57BL6NJ_T0076108.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153599830 153604861 - MGP_C57BL6NJ_P0076108 Actb protein_coding protein_coding MGP_C57BL6NJ_T0076109.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153600216 153604809 - MGP_C57BL6NJ_P0076109 Actb protein_coding protein_coding MGP_C57BL6NJ_T0076110.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153602485 153603956 - MGP_C57BL6NJ_P0076110 Actb protein_coding protein_coding MGP_C57BL6NJ_T0076111.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153602529 153604832 - Actb protein_coding processed_transcript MGP_C57BL6NJ_T0076112.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153602806 153604829 - MGP_C57BL6NJ_P0076112 Actb protein_coding protein_coding MGP_C57BL6NJ_T0076113.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153602839 153604072 - MGP_C57BL6NJ_P0076113 Actb protein_coding protein_coding MGP_C57BL6NJ_T0076114.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153602900 153604779 - Actb protein_coding retained_intron MGP_C57BL6NJ_T0076115.1 MGP_C57BL6NJ_G0030750.1 mouse_genomes_project 5 153603007 153604801 - Actb protein_coding retained_intron MGP_C57BL6NJ_T0008439.1 MGP_C57BL6NJ_G0006872.1 mouse_genomes_project 5 113044953 113045466 + Gm29464 lincRNA lincRNA MGP_C57BL6NJ_T0100433.1 MGP_C57BL6NJ_G0038479.1 mouse_genomes_project 5 32041892 32041999 + Gm26335 snRNA snRNA MGP_C57BL6NJ_T0076199.1 MGP_C57BL6NJ_G0030769.1 mouse_genomes_project 5 154655540 154659824 - MGP_C57BL6NJ_P0076199 Ankrd61 protein_coding protein_coding MGP_C57BL6NJ_T0076200.1 MGP_C57BL6NJ_G0030769.1 mouse_genomes_project 5 154655540 154659861 - MGP_C57BL6NJ_P0076200 Ankrd61 protein_coding protein_coding MGP_C57BL6NJ_T0076201.1 MGP_C57BL6NJ_G0030769.1 mouse_genomes_project 5 154655542 154662470 - MGP_C57BL6NJ_P0076201 Ankrd61 protein_coding protein_coding MGP_C57BL6NJ_T0074777.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250190 132378466 - MGP_C57BL6NJ_P0074777 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074778.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250190 132378170 - MGP_C57BL6NJ_P0074778 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074779.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250202 132378123 - MGP_C57BL6NJ_P0074779 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074780.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250202 132332257 - MGP_C57BL6NJ_P0074780 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074781.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250213 132279359 - Clip1 protein_coding retained_intron MGP_C57BL6NJ_T0074782.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132250262 132250953 - Clip1 protein_coding processed_transcript MGP_C57BL6NJ_T0074783.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132251228 132378173 - MGP_C57BL6NJ_P0074783 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074784.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132251469 132287721 - Clip1 protein_coding retained_intron MGP_C57BL6NJ_T0074785.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132251639 132344543 - MGP_C57BL6NJ_P0074785 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074786.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132251846 132293371 - MGP_C57BL6NJ_P0074786 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074787.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132258610 132293012 - Clip1 protein_coding retained_intron MGP_C57BL6NJ_T0074788.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132262492 132279268 - Clip1 protein_coding retained_intron MGP_C57BL6NJ_T0074789.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132293205 132344433 - MGP_C57BL6NJ_P0074789 Clip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074790.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132293254 132356586 - MGP_C57BL6NJ_P0074790 Clip1 protein_coding protein_coding MGP_C57BL6NJ_T0074791.1 MGP_C57BL6NJ_G0030505.1 mouse_genomes_project 5 132314844 132317536 - Clip1 protein_coding retained_intron MGP_C57BL6NJ_T0008295.1 MGP_C57BL6NJ_G0006757.1 mouse_genomes_project 5 40459937 40470949 - Gm35191 lincRNA lincRNA MGP_C57BL6NJ_T0075017.1 MGP_C57BL6NJ_G0030540.1 mouse_genomes_project 5 134234940 134236173 + MGP_C57BL6NJ_P0075017 Gm10382 protein_coding protein_coding MGP_C57BL6NJ_T0004982.1 MGP_C57BL6NJ_G0004287.1 mouse_genomes_project 5 131547005 131555998 + A930024E05Rik antisense antisense MGP_C57BL6NJ_T0076225.1 MGP_C57BL6NJ_G0030774.1 mouse_genomes_project 5 154758437 154787600 - MGP_C57BL6NJ_P0076225 Ccz1 protein_coding protein_coding MGP_C57BL6NJ_T0076226.1 MGP_C57BL6NJ_G0030774.1 mouse_genomes_project 5 154762003 154763113 - Ccz1 protein_coding processed_transcript MGP_C57BL6NJ_T0076227.1 MGP_C57BL6NJ_G0030774.1 mouse_genomes_project 5 154763006 154774677 - Ccz1 protein_coding retained_intron MGP_C57BL6NJ_T0076228.1 MGP_C57BL6NJ_G0030774.1 mouse_genomes_project 5 154782002 154787624 - Ccz1 protein_coding retained_intron MGP_C57BL6NJ_T0076229.1 MGP_C57BL6NJ_G0030774.1 mouse_genomes_project 5 154785227 154787624 - Ccz1 protein_coding retained_intron MGP_C57BL6NJ_T0072013.1 MGP_C57BL6NJ_G0029957.1 mouse_genomes_project 5 44554009 44597755 + MGP_C57BL6NJ_P0072013 Cd38 protein_coding protein_coding MGP_C57BL6NJ_T0072014.1 MGP_C57BL6NJ_G0029957.1 mouse_genomes_project 5 44554316 44555197 + Cd38 protein_coding retained_intron MGP_C57BL6NJ_T0001778.1 MGP_C57BL6NJ_G0001672.1 mouse_genomes_project 5 68156274 68158810 + TEC TEC MGP_C57BL6NJ_T0015439.1 MGP_C57BL6NJ_G0013484.1 mouse_genomes_project 5 91520090 91521150 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018665.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160433353 160441829 - 1810059H22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018666.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160434249 160436102 - 1810059H22Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018667.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160440216 160441323 - 1810059H22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018668.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160440288 160453185 - 1810059H22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018669.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160440507 160441299 - 1810059H22Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018670.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160440750 160447581 - 1810059H22Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018671.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160447248 160453199 - 1810059H22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018672.1 MGP_C57BL6NJ_G0016009.1 mouse_genomes_project 5 160448067 160453425 - 1810059H22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0100492.1 MGP_C57BL6NJ_G0038538.1 mouse_genomes_project 5 135455225 135455332 - Gm24839 snRNA snRNA MGP_C57BL6NJ_T0008271.1 MGP_C57BL6NJ_G0006745.1 mouse_genomes_project 5 35540807 35546688 + 4930478P22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008272.1 MGP_C57BL6NJ_G0006745.1 mouse_genomes_project 5 35540819 35546924 + 4930478P22Rik lincRNA lincRNA MGP_C57BL6NJ_T0008273.1 MGP_C57BL6NJ_G0006745.1 mouse_genomes_project 5 35540825 35546150 + 4930478P22Rik lincRNA lincRNA MGP_C57BL6NJ_T0018658.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139041500 139052608 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018659.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139041941 139052057 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018660.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139044183 139046450 + processed_transcript retained_intron MGP_C57BL6NJ_T0018661.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139047586 139048906 + processed_transcript retained_intron MGP_C57BL6NJ_T0018662.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139048980 139052102 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018663.1 MGP_C57BL6NJ_G0016007.1 mouse_genomes_project 5 139051206 139052219 + processed_transcript processed_transcript MGP_C57BL6NJ_T0015360.1 MGP_C57BL6NJ_G0013405.1 mouse_genomes_project 5 51953863 51954428 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072589.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299600 76321787 + MGP_C57BL6NJ_P0072589 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072590.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299608 76321899 + MGP_C57BL6NJ_P0072590 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072591.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299609 76316250 + MGP_C57BL6NJ_P0072591 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072592.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299623 76313597 + MGP_C57BL6NJ_P0072592 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072593.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299648 76321744 + MGP_C57BL6NJ_P0072593 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072594.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299657 76317301 + MGP_C57BL6NJ_P0072594 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072595.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299711 76321771 + MGP_C57BL6NJ_P0072595 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072596.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76299869 76301796 + MGP_C57BL6NJ_P0072596 Ociad1 protein_coding protein_coding MGP_C57BL6NJ_T0072597.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76301819 76321771 + MGP_C57BL6NJ_P0072597 Ociad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072598.1 MGP_C57BL6NJ_G0030054.1 mouse_genomes_project 5 76310943 76311976 + Ociad1 protein_coding retained_intron MGP_C57BL6NJ_T0072057.1 MGP_C57BL6NJ_G0029963.1 mouse_genomes_project 5 46246973 46257479 + MGP_C57BL6NJ_P0072057 Clrn2 protein_coding protein_coding MGP_C57BL6NJ_T0001867.1 MGP_C57BL6NJ_G0001760.1 mouse_genomes_project 5 106576528 106577604 - TEC TEC MGP_C57BL6NJ_T0015595.1 MGP_C57BL6NJ_G0013640.1 mouse_genomes_project 5 156480007 156564252 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073241.1 MGP_C57BL6NJ_G0030207.1 mouse_genomes_project 5 104453052 104475288 + MGP_C57BL6NJ_P0073241 Bmp3 protein_coding protein_coding MGP_C57BL6NJ_T0073242.1 MGP_C57BL6NJ_G0030207.1 mouse_genomes_project 5 104453076 104485921 + MGP_C57BL6NJ_P0073242 Bmp3 protein_coding protein_coding MGP_C57BL6NJ_T0073243.1 MGP_C57BL6NJ_G0030207.1 mouse_genomes_project 5 104453088 104485921 + MGP_C57BL6NJ_P0073243 Bmp3 protein_coding protein_coding MGP_C57BL6NJ_T0071722.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35107382 35192838 + MGP_C57BL6NJ_P0071722 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071723.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35107385 35179337 + Rgs12 protein_coding retained_intron MGP_C57BL6NJ_T0071724.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35124076 35199733 + MGP_C57BL6NJ_P0071724 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071725.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35133120 35134585 + Rgs12 protein_coding processed_transcript MGP_C57BL6NJ_T0071726.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35134295 35178748 + Rgs12 protein_coding processed_transcript MGP_C57BL6NJ_T0071727.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35148419 35182415 + MGP_C57BL6NJ_P0071727 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071728.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35148840 35199724 + MGP_C57BL6NJ_P0071728 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071729.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35149106 35192696 + MGP_C57BL6NJ_P0071729 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071730.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35158349 35192834 + MGP_C57BL6NJ_P0071730 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071731.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35158476 35199724 + MGP_C57BL6NJ_P0071731 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071732.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35179355 35181905 + Rgs12 protein_coding retained_intron MGP_C57BL6NJ_T0071734.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35182073 35183579 + Rgs12 protein_coding retained_intron MGP_C57BL6NJ_T0071735.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35183583 35189333 + MGP_C57BL6NJ_P0071735 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0071736.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35186145 35191295 + Rgs12 protein_coding processed_transcript MGP_C57BL6NJ_T0071737.1 MGP_C57BL6NJ_G0029904.1 mouse_genomes_project 5 35186212 35199725 + MGP_C57BL6NJ_P0071737 Rgs12 protein_coding protein_coding MGP_C57BL6NJ_T0001708.1 MGP_C57BL6NJ_G0001603.1 mouse_genomes_project 5 49950108 49951440 - TEC TEC MGP_C57BL6NJ_T0015304.1 MGP_C57BL6NJ_G0013349.1 mouse_genomes_project 5 27268162 27268643 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002041.1 MGP_C57BL6NJ_G0001932.1 mouse_genomes_project 5 158683298 158684347 + TEC TEC MGP_C57BL6NJ_T0004935.1 MGP_C57BL6NJ_G0004254.1 mouse_genomes_project 5 117700533 117708806 + Gm15559 antisense antisense MGP_C57BL6NJ_T0071609.1 MGP_C57BL6NJ_G0029888.1 mouse_genomes_project 5 34085301 34095234 + MGP_C57BL6NJ_P0071609 Nat8l protein_coding protein_coding MGP_C57BL6NJ_T0071610.1 MGP_C57BL6NJ_G0029888.1 mouse_genomes_project 5 34089080 34090161 + Nat8l protein_coding processed_transcript MGP_C57BL6NJ_T0011871.1 MGP_C57BL6NJ_G0009956.1 mouse_genomes_project 5 119273629 119273779 - Gm27627 misc_RNA misc_RNA MGP_C57BL6NJ_T0015264.1 MGP_C57BL6NJ_G0013309.1 mouse_genomes_project 5 17578763 17579361 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001992.1 MGP_C57BL6NJ_G0001884.1 mouse_genomes_project 5 141094639 141095794 - TEC TEC MGP_C57BL6NJ_T0101772.1 MGP_C57BL6NJ_G0039818.1 mouse_genomes_project 5 162375555 162375674 - Gm26013 snoRNA snoRNA MGP_C57BL6NJ_T0015280.1 MGP_C57BL6NJ_G0013325.1 mouse_genomes_project 5 21311599 21311981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103220.1 MGP_C57BL6NJ_G0041014.1 mouse_genomes_project 5 153868345 153869284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101764.1 MGP_C57BL6NJ_G0039810.1 mouse_genomes_project 5 129415806 129415940 + Gm26205 snoRNA snoRNA MGP_C57BL6NJ_T0076165.1 MGP_C57BL6NJ_G0030761.1 mouse_genomes_project 5 154118333 154155703 + MGP_C57BL6NJ_P0076165 Grid2ip protein_coding protein_coding MGP_C57BL6NJ_T0076166.1 MGP_C57BL6NJ_G0030761.1 mouse_genomes_project 5 154124789 154156033 + MGP_C57BL6NJ_P0076166 Grid2ip protein_coding protein_coding MGP_C57BL6NJ_T0076167.1 MGP_C57BL6NJ_G0030761.1 mouse_genomes_project 5 154132918 154156387 + MGP_C57BL6NJ_P0076167 Grid2ip protein_coding protein_coding MGP_C57BL6NJ_T0076168.1 MGP_C57BL6NJ_G0030761.1 mouse_genomes_project 5 154135800 154138560 + Grid2ip protein_coding retained_intron MGP_C57BL6NJ_T0076169.1 MGP_C57BL6NJ_G0030761.1 mouse_genomes_project 5 154138287 154143163 + Grid2ip protein_coding retained_intron MGP_C57BL6NJ_T0100423.1 MGP_C57BL6NJ_G0038469.1 mouse_genomes_project 5 18333344 18333447 - Gm25335 snRNA snRNA MGP_C57BL6NJ_T0008311.1 MGP_C57BL6NJ_G0006772.1 mouse_genomes_project 5 53212940 53214152 + Gm43177 lincRNA lincRNA MGP_C57BL6NJ_T0015497.1 MGP_C57BL6NJ_G0013542.1 mouse_genomes_project 5 113405924 113406167 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002033.1 MGP_C57BL6NJ_G0001924.1 mouse_genomes_project 5 151889099 151891469 - TEC TEC MGP_C57BL6NJ_T0001593.1 MGP_C57BL6NJ_G0001492.1 mouse_genomes_project 5 13074462 13077300 + TEC TEC MGP_C57BL6NJ_T0101759.1 MGP_C57BL6NJ_G0039805.1 mouse_genomes_project 5 114465882 114466014 + Gm22270 snoRNA snoRNA MGP_C57BL6NJ_T0071745.1 MGP_C57BL6NJ_G0029906.1 mouse_genomes_project 5 35216852 35243101 + MGP_C57BL6NJ_P0071745 Dok7 protein_coding protein_coding MGP_C57BL6NJ_T0071746.1 MGP_C57BL6NJ_G0029906.1 mouse_genomes_project 5 35216948 35243101 + MGP_C57BL6NJ_P0071746 Dok7 protein_coding protein_coding MGP_C57BL6NJ_T0071747.1 MGP_C57BL6NJ_G0029906.1 mouse_genomes_project 5 35216974 35228748 + MGP_C57BL6NJ_P0071747 Dok7 protein_coding protein_coding MGP_C57BL6NJ_T0071748.1 MGP_C57BL6NJ_G0029906.1 mouse_genomes_project 5 35217163 35249976 + MGP_C57BL6NJ_P0071748 Dok7 protein_coding protein_coding MGP_C57BL6NJ_T0071749.1 MGP_C57BL6NJ_G0029906.1 mouse_genomes_project 5 35237094 35243101 + Dok7 protein_coding retained_intron MGP_C57BL6NJ_T0072612.1 MGP_C57BL6NJ_G0030058.1 mouse_genomes_project 5 76655451 76681655 - MGP_C57BL6NJ_P0072612 Lrrc66 protein_coding protein_coding MGP_C57BL6NJ_T0072613.1 MGP_C57BL6NJ_G0030058.1 mouse_genomes_project 5 76678768 76679405 - MGP_C57BL6NJ_P0072613 Lrrc66 protein_coding protein_coding MGP_C57BL6NJ_T0001863.1 MGP_C57BL6NJ_G0001756.1 mouse_genomes_project 5 103530604 103533032 + TEC TEC MGP_C57BL6NJ_T0100457.1 MGP_C57BL6NJ_G0038503.1 mouse_genomes_project 5 83511805 83511954 - Gm23429 snRNA snRNA MGP_C57BL6NJ_T0001673.1 MGP_C57BL6NJ_G0001569.1 mouse_genomes_project 5 45242807 45243710 - TEC TEC MGP_C57BL6NJ_T0010941.1 MGP_C57BL6NJ_G0009026.1 mouse_genomes_project 5 85702865 85704743 + miRNA miRNA MGP_C57BL6NJ_T0015477.1 MGP_C57BL6NJ_G0013522.1 mouse_genomes_project 5 106336478 106336831 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001734.1 MGP_C57BL6NJ_G0001629.1 mouse_genomes_project 5 53664082 53666525 - TEC TEC MGP_C57BL6NJ_T0075456.1 MGP_C57BL6NJ_G0030619.1 mouse_genomes_project 5 145542722 145552220 - MGP_C57BL6NJ_P0075456 Tmem120a protein_coding protein_coding MGP_C57BL6NJ_T0075457.1 MGP_C57BL6NJ_G0030619.1 mouse_genomes_project 5 145542741 145543828 - Tmem120a protein_coding retained_intron MGP_C57BL6NJ_T0075458.1 MGP_C57BL6NJ_G0030619.1 mouse_genomes_project 5 145542775 145544474 - Tmem120a protein_coding processed_transcript MGP_C57BL6NJ_T0075459.1 MGP_C57BL6NJ_G0030619.1 mouse_genomes_project 5 145543492 145550171 - Tmem120a protein_coding retained_intron MGP_C57BL6NJ_T0075460.1 MGP_C57BL6NJ_G0030619.1 mouse_genomes_project 5 145544445 145551980 - MGP_C57BL6NJ_P0075460 Tmem120a protein_coding protein_coding MGP_C57BL6NJ_T0015297.1 MGP_C57BL6NJ_G0013342.1 mouse_genomes_project 5 24861291 24861565 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076061.1 MGP_C57BL6NJ_G0030738.1 mouse_genomes_project 5 151276718 151348597 - MGP_C57BL6NJ_P0076061 Gna12 protein_coding protein_coding MGP_C57BL6NJ_T0073298.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106156838 106234686 - MGP_C57BL6NJ_P0073298 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073299.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106156848 106231036 - MGP_C57BL6NJ_P0073299 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073300.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106156953 106234722 - MGP_C57BL6NJ_P0073300 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073301.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106156953 106231078 - MGP_C57BL6NJ_P0073301 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073302.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106156962 106231023 - MGP_C57BL6NJ_P0073302 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073303.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106157120 106234735 - MGP_C57BL6NJ_P0073303 Lin54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073304.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106158472 106230968 - MGP_C57BL6NJ_P0073304 Lin54 protein_coding protein_coding MGP_C57BL6NJ_T0073305.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106158472 106230968 - MGP_C57BL6NJ_P0073305 Lin54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073306.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106187205 106217049 - MGP_C57BL6NJ_P0073306 Lin54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073307.1 MGP_C57BL6NJ_G0030217.1 mouse_genomes_project 5 106215966 106231023 - Lin54 protein_coding retained_intron MGP_C57BL6NJ_T0004954.1 MGP_C57BL6NJ_G0004267.1 mouse_genomes_project 5 123641358 123646854 + C330018A13Rik antisense antisense MGP_C57BL6NJ_T0100459.1 MGP_C57BL6NJ_G0038505.1 mouse_genomes_project 5 84740644 84740747 + Gm22974 snRNA snRNA MGP_C57BL6NJ_T0101751.1 MGP_C57BL6NJ_G0039797.1 mouse_genomes_project 5 97065122 97065266 + Gm25290 snoRNA snoRNA MGP_C57BL6NJ_T0076089.1 MGP_C57BL6NJ_G0030746.1 mouse_genomes_project 5 153295330 153298123 + Wipi2 protein_coding retained_intron MGP_C57BL6NJ_T0076090.1 MGP_C57BL6NJ_G0030746.1 mouse_genomes_project 5 153297174 153339112 + MGP_C57BL6NJ_P0076090 Wipi2 protein_coding protein_coding MGP_C57BL6NJ_T0076091.1 MGP_C57BL6NJ_G0030746.1 mouse_genomes_project 5 153297223 153331233 + Wipi2 protein_coding retained_intron MGP_C57BL6NJ_T0076092.1 MGP_C57BL6NJ_G0030746.1 mouse_genomes_project 5 153297225 153336011 + MGP_C57BL6NJ_P0076092 Wipi2 protein_coding protein_coding MGP_C57BL6NJ_T0076093.1 MGP_C57BL6NJ_G0030746.1 mouse_genomes_project 5 153331037 153333168 + Wipi2 protein_coding retained_intron MGP_C57BL6NJ_T0015370.1 MGP_C57BL6NJ_G0013415.1 mouse_genomes_project 5 57104473 57105278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012113.1 MGP_C57BL6NJ_G0010163.1 mouse_genomes_project 5 111642488 111671156 - MGP_C57BL6NJ_P0012113 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012114.1 MGP_C57BL6NJ_G0010163.1 mouse_genomes_project 5 111645926 111668692 - MGP_C57BL6NJ_P0012114 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0004886.1 MGP_C57BL6NJ_G0004222.1 mouse_genomes_project 5 85764503 85771125 - Gm16054 antisense antisense MGP_C57BL6NJ_T0010906.1 MGP_C57BL6NJ_G0008991.1 mouse_genomes_project 5 775562 775630 + Gm22926 miRNA miRNA MGP_C57BL6NJ_T0072071.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46470052 46501776 + MGP_C57BL6NJ_P0072071 Ncapg protein_coding protein_coding MGP_C57BL6NJ_T0072072.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46476351 46501357 + Ncapg protein_coding retained_intron MGP_C57BL6NJ_T0072073.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46478202 46481309 + Ncapg protein_coding retained_intron MGP_C57BL6NJ_T0072074.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46478253 46501303 + Ncapg protein_coding retained_intron MGP_C57BL6NJ_T0072075.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46493279 46498160 + Ncapg protein_coding retained_intron MGP_C57BL6NJ_T0072078.1 MGP_C57BL6NJ_G0029967.1 mouse_genomes_project 5 46499895 46501300 + Ncapg protein_coding retained_intron MGP_C57BL6NJ_T0073269.1 MGP_C57BL6NJ_G0030212.1 mouse_genomes_project 5 105670373 105670976 + MGP_C57BL6NJ_P0073269 4930524J08Rik protein_coding protein_coding MGP_C57BL6NJ_T0075689.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147594871 147614902 + MGP_C57BL6NJ_P0075689 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075690.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147594882 147614904 + MGP_C57BL6NJ_P0075690 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075691.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147594895 147596394 + Tfr2 protein_coding retained_intron MGP_C57BL6NJ_T0075692.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147594900 147614902 + MGP_C57BL6NJ_P0075692 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075693.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147595751 147614888 + MGP_C57BL6NJ_P0075693 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075694.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147595836 147614899 + MGP_C57BL6NJ_P0075694 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075695.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147596482 147600013 + Tfr2 protein_coding retained_intron MGP_C57BL6NJ_T0075696.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147600105 147603655 + Tfr2 protein_coding retained_intron MGP_C57BL6NJ_T0075697.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147604756 147606696 + MGP_C57BL6NJ_P0075697 Tfr2 protein_coding protein_coding MGP_C57BL6NJ_T0075698.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147610654 147614412 + Tfr2 protein_coding retained_intron MGP_C57BL6NJ_T0075699.1 MGP_C57BL6NJ_G0030662.1 mouse_genomes_project 5 147610654 147611479 + Tfr2 protein_coding retained_intron MGP_C57BL6NJ_T0001571.1 MGP_C57BL6NJ_G0001470.1 mouse_genomes_project 5 4635131 4637556 - TEC TEC MGP_C57BL6NJ_T0001836.1 MGP_C57BL6NJ_G0001729.1 mouse_genomes_project 5 78306127 78306578 - TEC TEC MGP_C57BL6NJ_T0008599.1 MGP_C57BL6NJ_G0006972.1 mouse_genomes_project 5 147534729 147543135 + Gm8066 lincRNA lincRNA MGP_C57BL6NJ_T0010927.1 MGP_C57BL6NJ_G0009012.1 mouse_genomes_project 5 49150323 49150433 + Mir218-1 miRNA miRNA MGP_C57BL6NJ_T0075552.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146117912 146466367 - MGP_C57BL6NJ_P0075552 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075553.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146117912 146235246 - MGP_C57BL6NJ_P0075553 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075554.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146117912 146466383 - MGP_C57BL6NJ_P0075554 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075555.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146118287 146466397 - MGP_C57BL6NJ_P0075555 Cux1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075556.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146120251 146466382 - MGP_C57BL6NJ_P0075556 Cux1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075557.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146138470 146470234 - MGP_C57BL6NJ_P0075557 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075558.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146140422 146466365 - MGP_C57BL6NJ_P0075558 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075559.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146146510 146465470 - MGP_C57BL6NJ_P0075559 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075560.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146146541 146464551 - MGP_C57BL6NJ_P0075560 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075561.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146146548 146174565 - Cux1 protein_coding processed_transcript MGP_C57BL6NJ_T0075562.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146146846 146466338 - MGP_C57BL6NJ_P0075562 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075563.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146186091 146238522 - MGP_C57BL6NJ_P0075563 Cux1 protein_coding protein_coding MGP_C57BL6NJ_T0075564.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146237521 146466371 - Cux1 protein_coding retained_intron MGP_C57BL6NJ_T0075565.1 MGP_C57BL6NJ_G0030637.1 mouse_genomes_project 5 146369119 146470279 - Cux1 protein_coding retained_intron MGP_C57BL6NJ_T0070556.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2957855 2989043 - MGP_C57BL6NJ_P0070556 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070557.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2957857 2976090 - MGP_C57BL6NJ_P0070557 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070558.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2958980 2988525 - MGP_C57BL6NJ_P0070558 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070559.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2963964 2988517 - MGP_C57BL6NJ_P0070559 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070560.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2964517 2988532 - MGP_C57BL6NJ_P0070560 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070561.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2964751 2970312 - Steap2 protein_coding processed_transcript MGP_C57BL6NJ_T0070562.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2964756 2988525 - MGP_C57BL6NJ_P0070562 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070563.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2966531 2988791 - MGP_C57BL6NJ_P0070563 Steap2 protein_coding protein_coding MGP_C57BL6NJ_T0070564.1 MGP_C57BL6NJ_G0029706.1 mouse_genomes_project 5 2969121 2988998 - Steap2 protein_coding retained_intron MGP_C57BL6NJ_T0001627.1 MGP_C57BL6NJ_G0001524.1 mouse_genomes_project 5 31005614 31011228 - TEC TEC MGP_C57BL6NJ_T0008299.1 MGP_C57BL6NJ_G0006761.1 mouse_genomes_project 5 44038034 44041213 + Gm43699 lincRNA lincRNA MGP_C57BL6NJ_T0008664.1 MGP_C57BL6NJ_G0007022.1 mouse_genomes_project 5 162538440 162562303 - Gm43298 lincRNA lincRNA MGP_C57BL6NJ_T0010966.1 MGP_C57BL6NJ_G0009051.1 mouse_genomes_project 5 132197532 132197591 - Mir7647 miRNA miRNA MGP_C57BL6NJ_T0099464.1 MGP_C57BL6NJ_G0037521.1 mouse_genomes_project 5 30549007 30552600 + Gm19409 sense_intronic sense_intronic MGP_C57BL6NJ_T0001881.1 MGP_C57BL6NJ_G0001774.1 mouse_genomes_project 5 112273885 112276147 + TEC TEC MGP_C57BL6NJ_T0015284.1 MGP_C57BL6NJ_G0013329.1 mouse_genomes_project 5 22003997 22004616 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001900.1 MGP_C57BL6NJ_G0001793.1 mouse_genomes_project 5 119449409 119449776 - TEC TEC MGP_C57BL6NJ_T0001816.1 MGP_C57BL6NJ_G0001710.1 mouse_genomes_project 5 75474717 75475707 - TEC TEC MGP_C57BL6NJ_T0073832.1 MGP_C57BL6NJ_G0030328.1 mouse_genomes_project 5 118391569 118392281 + Mn1 protein_coding processed_transcript MGP_C57BL6NJ_T0073833.1 MGP_C57BL6NJ_G0030328.1 mouse_genomes_project 5 118391649 118434052 + MGP_C57BL6NJ_P0073833 Mn1 protein_coding protein_coding MGP_C57BL6NJ_T0008211.1 MGP_C57BL6NJ_G0006704.1 mouse_genomes_project 5 246081 246727 + lincRNA lincRNA MGP_C57BL6NJ_T0001622.1 MGP_C57BL6NJ_G0001520.1 mouse_genomes_project 5 29613592 29617593 - TEC TEC MGP_C57BL6NJ_T0103224.1 MGP_C57BL6NJ_G0041018.1 mouse_genomes_project 5 159872305 159872613 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015423.1 MGP_C57BL6NJ_G0013468.1 mouse_genomes_project 5 79705719 79706793 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010933.1 MGP_C57BL6NJ_G0009018.1 mouse_genomes_project 5 67257945 67258023 + Mir574 miRNA miRNA MGP_C57BL6NJ_T0072978.1 MGP_C57BL6NJ_G0030143.1 mouse_genomes_project 5 93421897 93443878 + MGP_C57BL6NJ_P0072978 Dck protein_coding protein_coding MGP_C57BL6NJ_T0072979.1 MGP_C57BL6NJ_G0030143.1 mouse_genomes_project 5 93426571 93427390 + Dck protein_coding retained_intron MGP_C57BL6NJ_T0010913.1 MGP_C57BL6NJ_G0008998.1 mouse_genomes_project 5 21777133 21777226 + Gm44363 miRNA miRNA MGP_C57BL6NJ_T0001897.1 MGP_C57BL6NJ_G0001790.1 mouse_genomes_project 5 118302070 118302877 - TEC TEC MGP_C57BL6NJ_T0072692.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79449077 79538913 - MGP_C57BL6NJ_P0072692 Clock protein_coding protein_coding MGP_C57BL6NJ_T0072693.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79451430 79538669 - MGP_C57BL6NJ_P0072693 Clock protein_coding protein_coding MGP_C57BL6NJ_T0072694.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79453106 79509827 - MGP_C57BL6NJ_P0072694 Clock protein_coding protein_coding MGP_C57BL6NJ_T0072695.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79467916 79538875 - Clock protein_coding retained_intron MGP_C57BL6NJ_T0072696.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79487345 79538893 - Clock protein_coding processed_transcript MGP_C57BL6NJ_T0072697.1 MGP_C57BL6NJ_G0030073.1 mouse_genomes_project 5 79507768 79538893 - Clock protein_coding retained_intron MGP_C57BL6NJ_T0015480.1 MGP_C57BL6NJ_G0013525.1 mouse_genomes_project 5 108019337 108020106 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015461.1 MGP_C57BL6NJ_G0013506.1 mouse_genomes_project 5 96619765 96623463 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103222.1 MGP_C57BL6NJ_G0041016.1 mouse_genomes_project 5 156840068 156856318 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0074501.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129973554 130004839 + MGP_C57BL6NJ_P0074501 Brap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074502.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129973581 129976954 + Brap protein_coding retained_intron MGP_C57BL6NJ_T0074503.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129973747 130004845 + MGP_C57BL6NJ_P0074503 Brap protein_coding protein_coding MGP_C57BL6NJ_T0074504.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129975021 129988362 + MGP_C57BL6NJ_P0074504 Brap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074505.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129975030 129978622 + MGP_C57BL6NJ_P0074505 Brap protein_coding protein_coding MGP_C57BL6NJ_T0074506.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129975060 129976686 + Brap protein_coding retained_intron MGP_C57BL6NJ_T0074507.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 129979506 130004844 + Brap protein_coding processed_transcript MGP_C57BL6NJ_T0074508.1 MGP_C57BL6NJ_G0030465.1 mouse_genomes_project 5 130000535 130004841 + Brap protein_coding retained_intron MGP_C57BL6NJ_T0071481.1 MGP_C57BL6NJ_G0029869.1 mouse_genomes_project 5 32783054 32856782 - MGP_C57BL6NJ_P0071481 Prr14l protein_coding protein_coding MGP_C57BL6NJ_T0071482.1 MGP_C57BL6NJ_G0029869.1 mouse_genomes_project 5 32786340 32825984 - MGP_C57BL6NJ_P0071482 Prr14l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071483.1 MGP_C57BL6NJ_G0029869.1 mouse_genomes_project 5 32786855 32789321 - Prr14l protein_coding retained_intron MGP_C57BL6NJ_T0071484.1 MGP_C57BL6NJ_G0029869.1 mouse_genomes_project 5 32838101 32856764 - MGP_C57BL6NJ_P0071484 Prr14l protein_coding protein_coding MGP_C57BL6NJ_T0074844.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132694198 132732857 + MGP_C57BL6NJ_P0074844 Hip1r protein_coding protein_coding MGP_C57BL6NJ_T0074845.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132702703 132712434 + MGP_C57BL6NJ_P0074845 Hip1r protein_coding protein_coding MGP_C57BL6NJ_T0074846.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132720383 132724698 + MGP_C57BL6NJ_P0074846 Hip1r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074847.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132726708 132728306 + Hip1r protein_coding retained_intron MGP_C57BL6NJ_T0074848.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132727084 132728961 + MGP_C57BL6NJ_P0074848 Hip1r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074849.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132727681 132728987 + Hip1r protein_coding retained_intron MGP_C57BL6NJ_T0074850.1 MGP_C57BL6NJ_G0030514.1 mouse_genomes_project 5 132727897 132728973 + Hip1r protein_coding retained_intron MGP_C57BL6NJ_T0103200.1 MGP_C57BL6NJ_G0040994.1 mouse_genomes_project 5 91592147 91594853 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004907.1 MGP_C57BL6NJ_G0004235.1 mouse_genomes_project 5 105341256 105343292 + 4930522N08Rik antisense antisense MGP_C57BL6NJ_T0100478.1 MGP_C57BL6NJ_G0038524.1 mouse_genomes_project 5 117599790 117599897 - Gm22716 snRNA snRNA MGP_C57BL6NJ_T0073725.1 MGP_C57BL6NJ_G0030310.1 mouse_genomes_project 5 117063553 117114963 + MGP_C57BL6NJ_P0073725 Golga3 protein_coding protein_coding MGP_C57BL6NJ_T0073726.1 MGP_C57BL6NJ_G0030310.1 mouse_genomes_project 5 117063709 117074180 + Golga3 protein_coding retained_intron MGP_C57BL6NJ_T0073727.1 MGP_C57BL6NJ_G0030310.1 mouse_genomes_project 5 117063731 117072246 + MGP_C57BL6NJ_P0073727 Golga3 protein_coding protein_coding MGP_C57BL6NJ_T0073728.1 MGP_C57BL6NJ_G0030310.1 mouse_genomes_project 5 117063731 117111694 + MGP_C57BL6NJ_P0073728 Golga3 protein_coding protein_coding MGP_C57BL6NJ_T0073729.1 MGP_C57BL6NJ_G0030310.1 mouse_genomes_project 5 117063749 117076093 + Golga3 protein_coding retained_intron MGP_C57BL6NJ_T0001832.1 MGP_C57BL6NJ_G0001725.1 mouse_genomes_project 5 77478570 77481323 - TEC TEC MGP_C57BL6NJ_T0099483.1 MGP_C57BL6NJ_G0037539.1 mouse_genomes_project 5 146814668 146822068 - Gm20485 sense_intronic sense_intronic MGP_C57BL6NJ_T0008483.1 MGP_C57BL6NJ_G0006896.1 mouse_genomes_project 5 119662865 119663592 + Gm27004 lincRNA lincRNA MGP_C57BL6NJ_T0015431.1 MGP_C57BL6NJ_G0013476.1 mouse_genomes_project 5 84784906 84785780 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015617.1 MGP_C57BL6NJ_G0013662.1 mouse_genomes_project 5 162087638 162088202 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011852.1 MGP_C57BL6NJ_G0009937.1 mouse_genomes_project 5 24088486 24088731 - Gm25363 misc_RNA misc_RNA MGP_C57BL6NJ_T0015425.1 MGP_C57BL6NJ_G0013470.1 mouse_genomes_project 5 80568143 80568716 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008388.1 MGP_C57BL6NJ_G0006836.1 mouse_genomes_project 5 102352231 102365021 - Gm33370 lincRNA lincRNA MGP_C57BL6NJ_T0075411.1 MGP_C57BL6NJ_G0030609.1 mouse_genomes_project 5 144984529 144986822 - MGP_C57BL6NJ_P0075411 Fzd9 protein_coding protein_coding MGP_C57BL6NJ_T0001928.1 MGP_C57BL6NJ_G0001821.1 mouse_genomes_project 5 126458202 126463200 + TEC TEC MGP_C57BL6NJ_T0071964.1 MGP_C57BL6NJ_G0029945.1 mouse_genomes_project 5 39051145 39067463 - MGP_C57BL6NJ_P0071964 Zfp518b protein_coding protein_coding MGP_C57BL6NJ_T0071965.1 MGP_C57BL6NJ_G0029945.1 mouse_genomes_project 5 39051147 39067387 - MGP_C57BL6NJ_P0071965 Zfp518b protein_coding protein_coding MGP_C57BL6NJ_T0071966.1 MGP_C57BL6NJ_G0029945.1 mouse_genomes_project 5 39056837 39067463 - MGP_C57BL6NJ_P0071966 Zfp518b protein_coding protein_coding MGP_C57BL6NJ_T0071967.1 MGP_C57BL6NJ_G0029945.1 mouse_genomes_project 5 39057288 39067394 - MGP_C57BL6NJ_P0071967 Zfp518b protein_coding protein_coding MGP_C57BL6NJ_T0073355.1 MGP_C57BL6NJ_G0030227.1 mouse_genomes_project 5 107607340 107668789 + MGP_C57BL6NJ_P0073355 Cds1 protein_coding protein_coding MGP_C57BL6NJ_T0073356.1 MGP_C57BL6NJ_G0030227.1 mouse_genomes_project 5 107651568 107666378 + Cds1 protein_coding retained_intron MGP_C57BL6NJ_T0001873.1 MGP_C57BL6NJ_G0001766.1 mouse_genomes_project 5 108866040 108868512 - TEC TEC MGP_C57BL6NJ_T0070688.1 MGP_C57BL6NJ_G0029728.1 mouse_genomes_project 5 12477076 12716611 + Sema3e protein_coding retained_intron MGP_C57BL6NJ_T0070689.1 MGP_C57BL6NJ_G0029728.1 mouse_genomes_project 5 12477076 12718986 + MGP_C57BL6NJ_P0070689 Sema3e protein_coding protein_coding MGP_C57BL6NJ_T0070690.1 MGP_C57BL6NJ_G0029728.1 mouse_genomes_project 5 12690395 12692244 + Sema3e protein_coding retained_intron MGP_C57BL6NJ_T0101750.1 MGP_C57BL6NJ_G0039796.1 mouse_genomes_project 5 94517343 94517472 + Gm25758 snoRNA snoRNA MGP_C57BL6NJ_T0015268.1 MGP_C57BL6NJ_G0013313.1 mouse_genomes_project 5 19453893 19454198 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008642.1 MGP_C57BL6NJ_G0007009.1 mouse_genomes_project 5 160698714 160699741 + Gm43332 lincRNA lincRNA MGP_C57BL6NJ_T0001939.1 MGP_C57BL6NJ_G0001832.1 mouse_genomes_project 5 129750361 129751450 + TEC TEC MGP_C57BL6NJ_T0010957.1 MGP_C57BL6NJ_G0009042.1 mouse_genomes_project 5 121665502 121665574 + Mir7027 miRNA miRNA MGP_C57BL6NJ_T0008373.1 MGP_C57BL6NJ_G0006821.1 mouse_genomes_project 5 90081999 90083977 + Gm43567 lincRNA lincRNA MGP_C57BL6NJ_T0103228.1 MGP_C57BL6NJ_G0041022.1 mouse_genomes_project 5 163330492 163334509 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0004929.1 MGP_C57BL6NJ_G0004249.1 mouse_genomes_project 5 117039412 117040048 - Gm43136 antisense antisense MGP_C57BL6NJ_T0015500.1 MGP_C57BL6NJ_G0013545.1 mouse_genomes_project 5 114003819 114004857 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001581.1 MGP_C57BL6NJ_G0001480.1 mouse_genomes_project 5 10232837 10241178 - TEC TEC MGP_C57BL6NJ_T0008638.1 MGP_C57BL6NJ_G0007006.1 mouse_genomes_project 5 160622858 160699595 - 5730422E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0008639.1 MGP_C57BL6NJ_G0007006.1 mouse_genomes_project 5 160622862 160628256 - 5730422E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0015508.1 MGP_C57BL6NJ_G0013553.1 mouse_genomes_project 5 115656291 115656665 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008655.1 MGP_C57BL6NJ_G0007016.1 mouse_genomes_project 5 161475937 161476928 - Gm43452 lincRNA lincRNA MGP_C57BL6NJ_T0015589.1 MGP_C57BL6NJ_G0013634.1 mouse_genomes_project 5 155069102 155069240 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070727.1 MGP_C57BL6NJ_G0029737.1 mouse_genomes_project 5 16662958 16727114 + MGP_C57BL6NJ_P0070727 Gnat3 protein_coding protein_coding MGP_C57BL6NJ_T0015256.1 MGP_C57BL6NJ_G0013301.1 mouse_genomes_project 5 12310812 12311776 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072904.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284520 92291502 - MGP_C57BL6NJ_P0072904 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072905.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284521 92291281 - Csn2 protein_coding retained_intron MGP_C57BL6NJ_T0072906.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284524 92288553 - Csn2 protein_coding retained_intron MGP_C57BL6NJ_T0072907.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284524 92291297 - MGP_C57BL6NJ_P0072907 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072908.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284701 92291281 - MGP_C57BL6NJ_P0072908 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072909.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284765 92291293 - MGP_C57BL6NJ_P0072909 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072910.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92284825 92291293 - MGP_C57BL6NJ_P0072910 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072911.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92285732 92289964 - MGP_C57BL6NJ_P0072911 Csn2 protein_coding protein_coding MGP_C57BL6NJ_T0072912.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92286460 92288428 - Csn2 protein_coding processed_transcript MGP_C57BL6NJ_T0072913.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92289680 92291293 - Csn2 protein_coding retained_intron MGP_C57BL6NJ_T0072914.1 MGP_C57BL6NJ_G0030121.1 mouse_genomes_project 5 92289764 92291293 - Csn2 protein_coding retained_intron MGP_C57BL6NJ_T0073384.1 MGP_C57BL6NJ_G0030231.1 mouse_genomes_project 5 109343116 109467184 + protein_coding retained_intron MGP_C57BL6NJ_T0073385.1 MGP_C57BL6NJ_G0030231.1 mouse_genomes_project 5 109343164 109455508 + MGP_C57BL6NJ_P0073385 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073386.1 MGP_C57BL6NJ_G0030231.1 mouse_genomes_project 5 109343180 109427730 + protein_coding retained_intron MGP_C57BL6NJ_T0073387.1 MGP_C57BL6NJ_G0030231.1 mouse_genomes_project 5 109343425 109524871 + MGP_C57BL6NJ_P0073387 protein_coding protein_coding MGP_C57BL6NJ_T0073388.1 MGP_C57BL6NJ_G0030231.1 mouse_genomes_project 5 109455333 109469089 + protein_coding retained_intron MGP_C57BL6NJ_T0004908.1 MGP_C57BL6NJ_G0004236.1 mouse_genomes_project 5 105669079 105670171 + Gm17092 antisense antisense MGP_C57BL6NJ_T0001917.1 MGP_C57BL6NJ_G0001810.1 mouse_genomes_project 5 123924389 123925852 - TEC TEC MGP_C57BL6NJ_T0011853.1 MGP_C57BL6NJ_G0009938.1 mouse_genomes_project 5 24496218 24496501 - Gm26356 misc_RNA misc_RNA MGP_C57BL6NJ_T0008588.1 MGP_C57BL6NJ_G0006964.1 mouse_genomes_project 5 143680844 143681641 - Gm15627 lincRNA lincRNA MGP_C57BL6NJ_T0073372.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108795219 109095812 - MGP_C57BL6NJ_P0073372 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073373.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108795221 108990626 - MGP_C57BL6NJ_P0073373 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073374.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108795221 109095812 - MGP_C57BL6NJ_P0073374 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073375.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108795221 108941431 - MGP_C57BL6NJ_P0073375 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073376.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108800400 109090407 - MGP_C57BL6NJ_P0073376 Mapk10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073377.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108807549 109095751 - MGP_C57BL6NJ_P0073377 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073378.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108870072 108909682 - MGP_C57BL6NJ_P0073378 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073379.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 108870382 109095812 - MGP_C57BL6NJ_P0073379 Mapk10 protein_coding protein_coding MGP_C57BL6NJ_T0073380.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 109045361 109095762 - Mapk10 protein_coding processed_transcript MGP_C57BL6NJ_T0073381.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 109090300 109093490 - Mapk10 protein_coding processed_transcript MGP_C57BL6NJ_T0073382.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 109090304 109095812 - Mapk10 protein_coding processed_transcript MGP_C57BL6NJ_T0073383.1 MGP_C57BL6NJ_G0030230.1 mouse_genomes_project 5 109093428 109095349 - Mapk10 protein_coding processed_transcript MGP_C57BL6NJ_T0015419.1 MGP_C57BL6NJ_G0013464.1 mouse_genomes_project 5 78399038 78399366 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075100.1 MGP_C57BL6NJ_G0030558.1 mouse_genomes_project 5 138917960 138929453 - Sept14 protein_coding processed_transcript MGP_C57BL6NJ_T0075101.1 MGP_C57BL6NJ_G0030558.1 mouse_genomes_project 5 138917971 138943187 - MGP_C57BL6NJ_P0075101 Sept14 protein_coding protein_coding MGP_C57BL6NJ_T0075102.1 MGP_C57BL6NJ_G0030558.1 mouse_genomes_project 5 138918008 138947329 - MGP_C57BL6NJ_P0075102 Sept14 protein_coding protein_coding MGP_C57BL6NJ_T0075606.1 MGP_C57BL6NJ_G0030645.1 mouse_genomes_project 5 147023433 147034576 - MGP_C57BL6NJ_P0075606 Ap1s1 protein_coding protein_coding MGP_C57BL6NJ_T0075607.1 MGP_C57BL6NJ_G0030645.1 mouse_genomes_project 5 147023782 147026091 - Ap1s1 protein_coding retained_intron MGP_C57BL6NJ_T0075608.1 MGP_C57BL6NJ_G0030645.1 mouse_genomes_project 5 147025819 147034236 - MGP_C57BL6NJ_P0075608 Ap1s1 protein_coding protein_coding MGP_C57BL6NJ_T0075609.1 MGP_C57BL6NJ_G0030645.1 mouse_genomes_project 5 147025836 147034483 - MGP_C57BL6NJ_P0075609 Ap1s1 protein_coding protein_coding MGP_C57BL6NJ_T0075610.1 MGP_C57BL6NJ_G0030645.1 mouse_genomes_project 5 147031509 147033848 - MGP_C57BL6NJ_P0075610 Ap1s1 protein_coding protein_coding MGP_C57BL6NJ_T0008511.1 MGP_C57BL6NJ_G0006916.1 mouse_genomes_project 5 125056251 125060611 + Gm15728 lincRNA lincRNA MGP_C57BL6NJ_T0008512.1 MGP_C57BL6NJ_G0006916.1 mouse_genomes_project 5 125056327 125057697 + Gm15728 lincRNA lincRNA MGP_C57BL6NJ_T0073548.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114122802 114190452 + MGP_C57BL6NJ_P0073548 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073549.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114122823 114170395 + MGP_C57BL6NJ_P0073549 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073550.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114122827 114127070 + Rpap2 protein_coding processed_transcript MGP_C57BL6NJ_T0073551.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114122841 114190452 + MGP_C57BL6NJ_P0073551 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073552.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114122880 114170395 + MGP_C57BL6NJ_P0073552 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073553.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114123067 114126898 + MGP_C57BL6NJ_P0073553 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073554.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114123088 114133360 + MGP_C57BL6NJ_P0073554 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0073555.1 MGP_C57BL6NJ_G0030273.1 mouse_genomes_project 5 114123364 114190456 + MGP_C57BL6NJ_P0073555 Rpap2 protein_coding protein_coding MGP_C57BL6NJ_T0010983.1 MGP_C57BL6NJ_G0009068.1 mouse_genomes_project 5 148314813 148314901 - Mir93 miRNA miRNA MGP_C57BL6NJ_T0001707.1 MGP_C57BL6NJ_G0001602.1 mouse_genomes_project 5 49945882 49947177 - TEC TEC MGP_C57BL6NJ_T0015536.1 MGP_C57BL6NJ_G0013581.1 mouse_genomes_project 5 124683926 124684507 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070762.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115904 20193745 + Gsap protein_coding retained_intron MGP_C57BL6NJ_T0070763.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115916 20229423 + MGP_C57BL6NJ_P0070763 Gsap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070764.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115938 20229445 + MGP_C57BL6NJ_P0070764 Gsap protein_coding protein_coding MGP_C57BL6NJ_T0070765.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115948 20120275 + Gsap protein_coding processed_transcript MGP_C57BL6NJ_T0070766.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115961 20185769 + MGP_C57BL6NJ_P0070766 Gsap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070767.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115962 20226364 + MGP_C57BL6NJ_P0070767 Gsap protein_coding protein_coding MGP_C57BL6NJ_T0070768.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20115962 20226364 + MGP_C57BL6NJ_P0070768 Gsap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070769.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20185137 20192262 + Gsap protein_coding retained_intron MGP_C57BL6NJ_T0070770.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20227510 20252440 + MGP_C57BL6NJ_P0070770 Gsap protein_coding protein_coding MGP_C57BL6NJ_T0070771.1 MGP_C57BL6NJ_G0029744.1 mouse_genomes_project 5 20227590 20252441 + Gsap protein_coding processed_transcript MGP_C57BL6NJ_T0073518.1 MGP_C57BL6NJ_G0030265.1 mouse_genomes_project 5 113853834 113912951 + MGP_C57BL6NJ_P0073518 protein_coding protein_coding MGP_C57BL6NJ_T0073519.1 MGP_C57BL6NJ_G0030265.1 mouse_genomes_project 5 113853850 113873418 + MGP_C57BL6NJ_P0073519 protein_coding protein_coding MGP_C57BL6NJ_T0073520.1 MGP_C57BL6NJ_G0030265.1 mouse_genomes_project 5 113853867 113864752 + protein_coding processed_transcript MGP_C57BL6NJ_T0073521.1 MGP_C57BL6NJ_G0030265.1 mouse_genomes_project 5 113884742 113912254 + protein_coding processed_transcript MGP_C57BL6NJ_T0015514.1 MGP_C57BL6NJ_G0013559.1 mouse_genomes_project 5 116292607 116294618 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001827.1 MGP_C57BL6NJ_G0001720.1 mouse_genomes_project 5 77114819 77120026 - TEC TEC MGP_C57BL6NJ_T0072150.1 MGP_C57BL6NJ_G0029977.1 mouse_genomes_project 5 53654693 53692757 - MGP_C57BL6NJ_P0072150 Lgi2 protein_coding protein_coding MGP_C57BL6NJ_T0072151.1 MGP_C57BL6NJ_G0029977.1 mouse_genomes_project 5 53654693 53694041 - MGP_C57BL6NJ_P0072151 Lgi2 protein_coding protein_coding MGP_C57BL6NJ_T0070695.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536008 14996934 + MGP_C57BL6NJ_P0070695 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070696.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536105 14993492 + MGP_C57BL6NJ_P0070696 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070697.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536105 14993492 + MGP_C57BL6NJ_P0070697 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070698.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536105 14993474 + MGP_C57BL6NJ_P0070698 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070699.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536105 14993492 + MGP_C57BL6NJ_P0070699 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070700.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536105 14996927 + MGP_C57BL6NJ_P0070700 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070701.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536146 14993150 + MGP_C57BL6NJ_P0070701 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070702.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14536228 14703063 + MGP_C57BL6NJ_P0070702 Cacna2d1 protein_coding protein_coding MGP_C57BL6NJ_T0070703.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14639425 14900222 + Cacna2d1 protein_coding retained_intron MGP_C57BL6NJ_T0070704.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14949902 14953608 + Cacna2d1 protein_coding retained_intron MGP_C57BL6NJ_T0070705.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14950062 14964653 + Cacna2d1 protein_coding retained_intron MGP_C57BL6NJ_T0070706.1 MGP_C57BL6NJ_G0029730.1 mouse_genomes_project 5 14984332 14985264 + Cacna2d1 protein_coding retained_intron MGP_C57BL6NJ_T0001671.1 MGP_C57BL6NJ_G0001567.1 mouse_genomes_project 5 45078461 45078804 + TEC TEC MGP_C57BL6NJ_T0070533.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2828831 2851306 - MGP_C57BL6NJ_P0070533 Gtpbp10 protein_coding protein_coding MGP_C57BL6NJ_T0070534.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2828850 2851248 - MGP_C57BL6NJ_P0070534 Gtpbp10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070535.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2829009 2851296 - MGP_C57BL6NJ_P0070535 Gtpbp10 protein_coding protein_coding MGP_C57BL6NJ_T0070536.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2832973 2835263 - Gtpbp10 protein_coding retained_intron MGP_C57BL6NJ_T0070537.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2832993 2834518 - Gtpbp10 protein_coding retained_intron MGP_C57BL6NJ_T0070538.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2833410 2849025 - MGP_C57BL6NJ_P0070538 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070539.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2835137 2851244 - MGP_C57BL6NJ_P0070539 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070540.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2835181 2847537 - Gtpbp10 protein_coding retained_intron MGP_C57BL6NJ_T0070541.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2835218 2838340 - Gtpbp10 protein_coding retained_intron MGP_C57BL6NJ_T0070542.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2837421 2851265 - MGP_C57BL6NJ_P0070542 Gtpbp10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070543.1 MGP_C57BL6NJ_G0029704.1 mouse_genomes_project 5 2850651 2851299 - MGP_C57BL6NJ_P0070543 Gtpbp10 protein_coding protein_coding MGP_C57BL6NJ_T0070505.1 MGP_C57BL6NJ_G0029699.1 mouse_genomes_project 5 1321206 1326491 + MGP_C57BL6NJ_P0070505 Mterf1a protein_coding protein_coding MGP_C57BL6NJ_T0074163.1 MGP_C57BL6NJ_G0030396.1 mouse_genomes_project 5 122748077 122756156 - MGP_C57BL6NJ_P0074163 Gatc protein_coding protein_coding MGP_C57BL6NJ_T0072881.1 MGP_C57BL6NJ_G0030113.1 mouse_genomes_project 5 91823143 92057009 - MGP_C57BL6NJ_P0072881 protein_coding protein_coding MGP_C57BL6NJ_T0100421.1 MGP_C57BL6NJ_G0038467.1 mouse_genomes_project 5 6732368 6732535 + Gm24666 snRNA snRNA MGP_C57BL6NJ_T0074367.1 MGP_C57BL6NJ_G0030434.1 mouse_genomes_project 5 128499817 128522988 - MGP_C57BL6NJ_P0074367 Plbd2 protein_coding protein_coding MGP_C57BL6NJ_T0074368.1 MGP_C57BL6NJ_G0030434.1 mouse_genomes_project 5 128501782 128522964 - Plbd2 protein_coding retained_intron MGP_C57BL6NJ_T0074369.1 MGP_C57BL6NJ_G0030434.1 mouse_genomes_project 5 128503834 128522975 - Plbd2 protein_coding retained_intron MGP_C57BL6NJ_T0008516.1 MGP_C57BL6NJ_G0006920.1 mouse_genomes_project 5 126784127 126792907 + 4930413E15Rik lincRNA lincRNA MGP_C57BL6NJ_T0076467.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159726704 159811195 - MGP_C57BL6NJ_P0076467 Slc7a1 protein_coding protein_coding MGP_C57BL6NJ_T0076468.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159733814 159802307 - MGP_C57BL6NJ_P0076468 Slc7a1 protein_coding protein_coding MGP_C57BL6NJ_T0076469.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159739638 159741789 - Slc7a1 protein_coding retained_intron MGP_C57BL6NJ_T0076470.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159741140 159811082 - MGP_C57BL6NJ_P0076470 Slc7a1 protein_coding protein_coding MGP_C57BL6NJ_T0076471.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159753941 159777259 - MGP_C57BL6NJ_P0076471 Slc7a1 protein_coding protein_coding MGP_C57BL6NJ_T0076472.1 MGP_C57BL6NJ_G0030832.1 mouse_genomes_project 5 159800908 159803140 - Slc7a1 protein_coding retained_intron MGP_C57BL6NJ_T0073540.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114078136 114122746 - MGP_C57BL6NJ_P0073540 Glmn protein_coding protein_coding MGP_C57BL6NJ_T0073541.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114078138 114122684 - MGP_C57BL6NJ_P0073541 Glmn protein_coding protein_coding MGP_C57BL6NJ_T0073542.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114078191 114080325 - Glmn protein_coding retained_intron MGP_C57BL6NJ_T0073543.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114078192 114122995 - MGP_C57BL6NJ_P0073543 Glmn protein_coding protein_coding MGP_C57BL6NJ_T0073544.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114078193 114122651 - MGP_C57BL6NJ_P0073544 Glmn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073545.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114103040 114122673 - Glmn protein_coding processed_transcript MGP_C57BL6NJ_T0073546.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114106047 114122746 - Glmn protein_coding processed_transcript MGP_C57BL6NJ_T0073547.1 MGP_C57BL6NJ_G0030272.1 mouse_genomes_project 5 114106081 114122653 - MGP_C57BL6NJ_P0073547 Glmn protein_coding protein_coding MGP_C57BL6NJ_T0075502.1 MGP_C57BL6NJ_G0030628.1 mouse_genomes_project 5 145880814 145888797 + MGP_C57BL6NJ_P0075502 Upk3b protein_coding protein_coding MGP_C57BL6NJ_T0001885.1 MGP_C57BL6NJ_G0001778.1 mouse_genomes_project 5 114220294 114221291 + TEC TEC MGP_C57BL6NJ_T0074854.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132805592 132843862 - MGP_C57BL6NJ_P0074854 Abcb9 protein_coding protein_coding MGP_C57BL6NJ_T0074855.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132805918 132843799 - MGP_C57BL6NJ_P0074855 Abcb9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074856.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132806485 132824390 - Abcb9 protein_coding retained_intron MGP_C57BL6NJ_T0074857.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132816924 132836908 - MGP_C57BL6NJ_P0074857 Abcb9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074858.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132816928 132836908 - MGP_C57BL6NJ_P0074858 Abcb9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074859.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132821377 132825079 - Abcb9 protein_coding processed_transcript MGP_C57BL6NJ_T0074860.1 MGP_C57BL6NJ_G0030516.1 mouse_genomes_project 5 132834580 132843850 - Abcb9 protein_coding retained_intron MGP_C57BL6NJ_T0018587.1 MGP_C57BL6NJ_G0015983.1 mouse_genomes_project 5 24392914 24394881 + 2900005J15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018588.1 MGP_C57BL6NJ_G0015983.1 mouse_genomes_project 5 24393389 24401972 + 2900005J15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0102258.1 MGP_C57BL6NJ_G0040247.1 mouse_genomes_project 5 23901202 23904595 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102259.1 MGP_C57BL6NJ_G0040247.1 mouse_genomes_project 5 23903418 23904469 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001808.1 MGP_C57BL6NJ_G0001702.1 mouse_genomes_project 5 71870077 71871654 - TEC TEC MGP_C57BL6NJ_T0070917.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23644846 23648620 + MGP_C57BL6NJ_P0070917 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070918.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23644862 23651157 + Slc4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0070919.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23644868 23650890 + MGP_C57BL6NJ_P0070919 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070920.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23646241 23661958 + MGP_C57BL6NJ_P0070920 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070921.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23646285 23648597 + Slc4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0070922.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23646294 23648711 + Slc4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0070923.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23647838 23650860 + MGP_C57BL6NJ_P0070923 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070924.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23649215 23661955 + MGP_C57BL6NJ_P0070924 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070925.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23649270 23650846 + Slc4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0070926.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23649430 23661955 + MGP_C57BL6NJ_P0070926 Slc4a2 protein_coding protein_coding MGP_C57BL6NJ_T0070927.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23650025 23650787 + Slc4a2 protein_coding retained_intron MGP_C57BL6NJ_T0070928.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23652343 23655360 + Slc4a2 protein_coding retained_intron MGP_C57BL6NJ_T0070929.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23656552 23657495 + Slc4a2 protein_coding retained_intron MGP_C57BL6NJ_T0070930.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23657767 23660264 + Slc4a2 protein_coding retained_intron MGP_C57BL6NJ_T0070933.1 MGP_C57BL6NJ_G0029773.1 mouse_genomes_project 5 23660753 23661580 + Slc4a2 protein_coding retained_intron MGP_C57BL6NJ_T0010919.1 MGP_C57BL6NJ_G0009004.1 mouse_genomes_project 5 30344743 30344823 + Mir5625 miRNA miRNA MGP_C57BL6NJ_T0076144.1 MGP_C57BL6NJ_G0030757.1 mouse_genomes_project 5 154001923 154022217 - MGP_C57BL6NJ_P0076144 Zfp316 protein_coding protein_coding MGP_C57BL6NJ_T0076145.1 MGP_C57BL6NJ_G0030757.1 mouse_genomes_project 5 154002515 154008427 - Zfp316 protein_coding retained_intron MGP_C57BL6NJ_T0076146.1 MGP_C57BL6NJ_G0030757.1 mouse_genomes_project 5 154005435 154016849 - MGP_C57BL6NJ_P0076146 Zfp316 protein_coding protein_coding MGP_C57BL6NJ_T0008628.1 MGP_C57BL6NJ_G0006998.1 mouse_genomes_project 5 160181832 160183132 + 2210417A02Rik lincRNA lincRNA MGP_C57BL6NJ_T0004890.1 MGP_C57BL6NJ_G0004226.1 mouse_genomes_project 5 92587736 92590601 + BC051076 antisense antisense MGP_C57BL6NJ_T0004891.1 MGP_C57BL6NJ_G0004226.1 mouse_genomes_project 5 92587736 92590604 + BC051076 antisense antisense MGP_C57BL6NJ_T0001783.1 MGP_C57BL6NJ_G0001677.1 mouse_genomes_project 5 68343787 68344688 + TEC TEC MGP_C57BL6NJ_T0071244.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806070 30812545 + MGP_C57BL6NJ_P0071244 Atraid protein_coding protein_coding MGP_C57BL6NJ_T0071245.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806079 30817055 + Atraid protein_coding retained_intron MGP_C57BL6NJ_T0071246.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806393 30817061 + MGP_C57BL6NJ_P0071246 Atraid protein_coding protein_coding MGP_C57BL6NJ_T0071247.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806397 30817059 + MGP_C57BL6NJ_P0071247 Atraid protein_coding protein_coding MGP_C57BL6NJ_T0071248.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806406 30816431 + MGP_C57BL6NJ_P0071248 Atraid protein_coding protein_coding MGP_C57BL6NJ_T0071249.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806417 30817056 + MGP_C57BL6NJ_P0071249 Atraid protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071250.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30806480 30816782 + MGP_C57BL6NJ_P0071250 Atraid protein_coding protein_coding MGP_C57BL6NJ_T0071251.1 MGP_C57BL6NJ_G0029836.1 mouse_genomes_project 5 30816307 30817061 + Atraid protein_coding processed_transcript MGP_C57BL6NJ_T0071635.1 MGP_C57BL6NJ_G0029893.1 mouse_genomes_project 5 34406625 34440989 + MGP_C57BL6NJ_P0071635 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0072836.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90480666 90519320 + MGP_C57BL6NJ_P0072836 Stap1 protein_coding protein_coding MGP_C57BL6NJ_T0072837.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90480670 90507667 + Stap1 protein_coding retained_intron MGP_C57BL6NJ_T0072838.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90480694 90495705 + Stap1 protein_coding retained_intron MGP_C57BL6NJ_T0072839.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90480703 90495701 + Stap1 protein_coding retained_intron MGP_C57BL6NJ_T0072840.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90480732 90515960 + MGP_C57BL6NJ_P0072840 Stap1 protein_coding protein_coding MGP_C57BL6NJ_T0072841.1 MGP_C57BL6NJ_G0030095.1 mouse_genomes_project 5 90496150 90504729 + Stap1 protein_coding retained_intron MGP_C57BL6NJ_T0008534.1 MGP_C57BL6NJ_G0006935.1 mouse_genomes_project 5 131713982 131715982 + Gm38102 lincRNA lincRNA MGP_C57BL6NJ_T0008538.1 MGP_C57BL6NJ_G0006935.1 mouse_genomes_project 5 131715812 131717747 + Gm38102 lincRNA lincRNA MGP_C57BL6NJ_T0008610.1 MGP_C57BL6NJ_G0006982.1 mouse_genomes_project 5 154022269 154024708 + BC030343 lincRNA lincRNA MGP_C57BL6NJ_T0004942.1 MGP_C57BL6NJ_G0004258.1 mouse_genomes_project 5 120837342 120838062 + Gm15736 antisense antisense MGP_C57BL6NJ_T0071085.1 MGP_C57BL6NJ_G0029807.1 mouse_genomes_project 5 29167253 29280596 + MGP_C57BL6NJ_P0071085 Ube3c protein_coding protein_coding MGP_C57BL6NJ_T0071086.1 MGP_C57BL6NJ_G0029807.1 mouse_genomes_project 5 29167457 29233927 + MGP_C57BL6NJ_P0071086 Ube3c protein_coding protein_coding MGP_C57BL6NJ_T0071087.1 MGP_C57BL6NJ_G0029807.1 mouse_genomes_project 5 29167497 29201493 + Ube3c protein_coding retained_intron MGP_C57BL6NJ_T0071088.1 MGP_C57BL6NJ_G0029807.1 mouse_genomes_project 5 29192214 29202030 + Ube3c protein_coding processed_transcript MGP_C57BL6NJ_T0071089.1 MGP_C57BL6NJ_G0029807.1 mouse_genomes_project 5 29232355 29233927 + Ube3c protein_coding retained_intron MGP_C57BL6NJ_T0072512.1 MGP_C57BL6NJ_G0030040.1 mouse_genomes_project 5 74537333 75012278 + MGP_C57BL6NJ_P0072512 Gabrb1 protein_coding protein_coding MGP_C57BL6NJ_T0072513.1 MGP_C57BL6NJ_G0030040.1 mouse_genomes_project 5 74584638 75043812 + MGP_C57BL6NJ_P0072513 Gabrb1 protein_coding protein_coding MGP_C57BL6NJ_T0008587.1 MGP_C57BL6NJ_G0006963.1 mouse_genomes_project 5 143070969 143143583 - Gm42624 lincRNA lincRNA MGP_C57BL6NJ_T0008227.1 MGP_C57BL6NJ_G0006718.1 mouse_genomes_project 5 21574273 21583589 + lincRNA lincRNA MGP_C57BL6NJ_T0008228.1 MGP_C57BL6NJ_G0006718.1 mouse_genomes_project 5 21574273 22439924 + lincRNA lincRNA MGP_C57BL6NJ_T0008229.1 MGP_C57BL6NJ_G0006718.1 mouse_genomes_project 5 21574280 21861734 + lincRNA lincRNA MGP_C57BL6NJ_T0008230.1 MGP_C57BL6NJ_G0006718.1 mouse_genomes_project 5 21579333 21582782 + lincRNA lincRNA MGP_C57BL6NJ_T0070691.1 MGP_C57BL6NJ_G0029729.1 mouse_genomes_project 5 12988200 13296529 + MGP_C57BL6NJ_P0070691 protein_coding protein_coding MGP_C57BL6NJ_T0070692.1 MGP_C57BL6NJ_G0029729.1 mouse_genomes_project 5 12988200 13367895 + MGP_C57BL6NJ_P0070692 protein_coding protein_coding MGP_C57BL6NJ_T0070693.1 MGP_C57BL6NJ_G0029729.1 mouse_genomes_project 5 12988275 13364620 + protein_coding retained_intron MGP_C57BL6NJ_T0070694.1 MGP_C57BL6NJ_G0029729.1 mouse_genomes_project 5 13169160 13296540 + MGP_C57BL6NJ_P0070694 protein_coding protein_coding MGP_C57BL6NJ_T0074415.1 MGP_C57BL6NJ_G0030446.1 mouse_genomes_project 5 128870891 128885832 - MGP_C57BL6NJ_P0074415 protein_coding protein_coding MGP_C57BL6NJ_T0101765.1 MGP_C57BL6NJ_G0039811.1 mouse_genomes_project 5 139044041 139044176 + Gm23245 snoRNA snoRNA MGP_C57BL6NJ_T0011875.1 MGP_C57BL6NJ_G0009960.1 mouse_genomes_project 5 142259872 142260151 + Gm25722 misc_RNA misc_RNA MGP_C57BL6NJ_T0076342.1 MGP_C57BL6NJ_G0030798.1 mouse_genomes_project 5 156393228 156427204 - MGP_C57BL6NJ_P0076342 Cyp3a16 protein_coding protein_coding MGP_C57BL6NJ_T0071410.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376595 31379006 + Slc4a1ap protein_coding retained_intron MGP_C57BL6NJ_T0071411.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376595 31403420 + MGP_C57BL6NJ_P0071411 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071412.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376597 31384050 + Slc4a1ap protein_coding retained_intron MGP_C57BL6NJ_T0071413.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376597 31403726 + MGP_C57BL6NJ_P0071413 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071414.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376612 31386419 + MGP_C57BL6NJ_P0071414 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071415.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31376612 31403425 + MGP_C57BL6NJ_P0071415 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071416.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31377201 31381829 + Slc4a1ap protein_coding retained_intron MGP_C57BL6NJ_T0071417.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31381573 31384591 + Slc4a1ap protein_coding retained_intron MGP_C57BL6NJ_T0071418.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31385732 31403391 + MGP_C57BL6NJ_P0071418 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071419.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31393190 31403421 + Slc4a1ap protein_coding retained_intron MGP_C57BL6NJ_T0071420.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31393379 31403425 + MGP_C57BL6NJ_P0071420 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071421.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31393457 31403350 + MGP_C57BL6NJ_P0071421 Slc4a1ap protein_coding protein_coding MGP_C57BL6NJ_T0071422.1 MGP_C57BL6NJ_G0029859.1 mouse_genomes_project 5 31399992 31406198 + Slc4a1ap protein_coding processed_transcript MGP_C57BL6NJ_T0075543.1 MGP_C57BL6NJ_G0030635.1 mouse_genomes_project 5 146040275 146068265 - MGP_C57BL6NJ_P0075543 Prkrip1 protein_coding protein_coding MGP_C57BL6NJ_T0075544.1 MGP_C57BL6NJ_G0030635.1 mouse_genomes_project 5 146044561 146068212 - Prkrip1 protein_coding processed_transcript MGP_C57BL6NJ_T0075545.1 MGP_C57BL6NJ_G0030635.1 mouse_genomes_project 5 146044899 146067124 - MGP_C57BL6NJ_P0075545 Prkrip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075546.1 MGP_C57BL6NJ_G0030635.1 mouse_genomes_project 5 146044904 146068210 - MGP_C57BL6NJ_P0075546 Prkrip1 protein_coding protein_coding MGP_C57BL6NJ_T0070432.1 MGP_C57BL6NJ_G0029688.1 mouse_genomes_project 5 644329 657096 + MGP_C57BL6NJ_P0070432 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070433.1 MGP_C57BL6NJ_G0029688.1 mouse_genomes_project 5 644436 657111 + MGP_C57BL6NJ_P0070433 1700109H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0070434.1 MGP_C57BL6NJ_G0029688.1 mouse_genomes_project 5 648442 657111 + MGP_C57BL6NJ_P0070434 1700109H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0070435.1 MGP_C57BL6NJ_G0029688.1 mouse_genomes_project 5 650977 653204 + 1700109H08Rik protein_coding retained_intron MGP_C57BL6NJ_T0070436.1 MGP_C57BL6NJ_G0029688.1 mouse_genomes_project 5 653252 657099 + MGP_C57BL6NJ_P0070436 1700109H08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015300.1 MGP_C57BL6NJ_G0013345.1 mouse_genomes_project 5 25974590 25974702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015296.1 MGP_C57BL6NJ_G0013341.1 mouse_genomes_project 5 24771457 24772061 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015235.1 MGP_C57BL6NJ_G0013280.1 mouse_genomes_project 5 3775347 3778316 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015438.1 MGP_C57BL6NJ_G0013483.1 mouse_genomes_project 5 91488554 91489811 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074310.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125711890 125747284 + MGP_C57BL6NJ_P0074310 Fbxo21 protein_coding protein_coding MGP_C57BL6NJ_T0074311.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125711934 125722654 + Fbxo21 protein_coding retained_intron MGP_C57BL6NJ_T0074312.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125711944 125747283 + MGP_C57BL6NJ_P0074312 Fbxo21 protein_coding protein_coding MGP_C57BL6NJ_T0074313.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125711988 125747285 + MGP_C57BL6NJ_P0074313 Fbxo21 protein_coding protein_coding MGP_C57BL6NJ_T0074314.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125712474 125721302 + Fbxo21 protein_coding processed_transcript MGP_C57BL6NJ_T0074315.1 MGP_C57BL6NJ_G0030421.1 mouse_genomes_project 5 125714406 125721188 + Fbxo21 protein_coding processed_transcript MGP_C57BL6NJ_T0015518.1 MGP_C57BL6NJ_G0013563.1 mouse_genomes_project 5 117391447 117392894 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004895.1 MGP_C57BL6NJ_G0004230.1 mouse_genomes_project 5 101846000 101847355 - Gm33050 antisense antisense MGP_C57BL6NJ_T0001711.1 MGP_C57BL6NJ_G0001606.1 mouse_genomes_project 5 50007823 50008455 - TEC TEC MGP_C57BL6NJ_T0071611.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34096496 34102880 - Poln protein_coding processed_transcript MGP_C57BL6NJ_T0071612.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34096506 34136979 - Poln protein_coding processed_transcript MGP_C57BL6NJ_T0071613.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34096515 34269648 - MGP_C57BL6NJ_P0071613 Poln protein_coding protein_coding MGP_C57BL6NJ_T0071614.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34096515 34269648 - MGP_C57BL6NJ_P0071614 Poln protein_coding protein_coding MGP_C57BL6NJ_T0071615.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34096600 34269626 - MGP_C57BL6NJ_P0071615 Poln protein_coding protein_coding MGP_C57BL6NJ_T0071616.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34103670 34199896 - Poln protein_coding processed_transcript MGP_C57BL6NJ_T0071617.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34123709 34199836 - Poln protein_coding processed_transcript MGP_C57BL6NJ_T0071618.1 MGP_C57BL6NJ_G0029889.1 mouse_genomes_project 5 34194664 34199912 - Poln protein_coding retained_intron MGP_C57BL6NJ_T0075437.1 MGP_C57BL6NJ_G0030615.1 mouse_genomes_project 5 145331832 145339356 - MGP_C57BL6NJ_P0075437 Ccl26 protein_coding protein_coding MGP_C57BL6NJ_T0075785.1 MGP_C57BL6NJ_G0030681.1 mouse_genomes_project 5 148089541 148098255 + MGP_C57BL6NJ_P0075785 Azgp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075786.1 MGP_C57BL6NJ_G0030681.1 mouse_genomes_project 5 148089560 148098255 + MGP_C57BL6NJ_P0075786 Azgp1 protein_coding protein_coding MGP_C57BL6NJ_T0075787.1 MGP_C57BL6NJ_G0030681.1 mouse_genomes_project 5 148089589 148093702 + Azgp1 protein_coding retained_intron MGP_C57BL6NJ_T0001947.1 MGP_C57BL6NJ_G0001840.1 mouse_genomes_project 5 130976575 130979462 - TEC TEC MGP_C57BL6NJ_T0010964.1 MGP_C57BL6NJ_G0009049.1 mouse_genomes_project 5 130170280 130170345 - Mir7031 miRNA miRNA MGP_C57BL6NJ_T0015346.1 MGP_C57BL6NJ_G0013391.1 mouse_genomes_project 5 43146375 43146809 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074359.1 MGP_C57BL6NJ_G0030431.1 mouse_genomes_project 5 128437543 128446993 + MGP_C57BL6NJ_P0074359 Lhx5 protein_coding protein_coding MGP_C57BL6NJ_T0001826.1 MGP_C57BL6NJ_G0001719.1 mouse_genomes_project 5 76696196 76696775 - TEC TEC MGP_C57BL6NJ_T0001725.1 MGP_C57BL6NJ_G0001620.1 mouse_genomes_project 5 52579866 52583257 - TEC TEC MGP_C57BL6NJ_T0008218.1 MGP_C57BL6NJ_G0006711.1 mouse_genomes_project 5 7942449 8046063 + Gm42831 lincRNA lincRNA MGP_C57BL6NJ_T0008219.1 MGP_C57BL6NJ_G0006711.1 mouse_genomes_project 5 7942499 8037493 + Gm42831 lincRNA lincRNA MGP_C57BL6NJ_T0001580.1 MGP_C57BL6NJ_G0001479.1 mouse_genomes_project 5 8431544 8433602 - TEC TEC MGP_C57BL6NJ_T0071844.1 MGP_C57BL6NJ_G0029924.1 mouse_genomes_project 5 36974676 36975949 - MGP_C57BL6NJ_P0071844 Bloc1s4 protein_coding protein_coding MGP_C57BL6NJ_T0075119.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139017505 139033670 - MGP_C57BL6NJ_P0075119 Psph protein_coding protein_coding MGP_C57BL6NJ_T0075120.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139017505 139041952 - MGP_C57BL6NJ_P0075120 Psph protein_coding protein_coding MGP_C57BL6NJ_T0075121.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139021266 139033710 - MGP_C57BL6NJ_P0075121 Psph protein_coding protein_coding MGP_C57BL6NJ_T0075122.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139022444 139041657 - MGP_C57BL6NJ_P0075122 Psph protein_coding protein_coding MGP_C57BL6NJ_T0075123.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139023164 139033703 - Psph protein_coding retained_intron MGP_C57BL6NJ_T0075124.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139031362 139041755 - Psph protein_coding retained_intron MGP_C57BL6NJ_T0075125.1 MGP_C57BL6NJ_G0030561.1 mouse_genomes_project 5 139033877 139041710 - Psph protein_coding processed_transcript MGP_C57BL6NJ_T0008270.1 MGP_C57BL6NJ_G0006744.1 mouse_genomes_project 5 34420912 34441192 - Gm43458 lincRNA lincRNA MGP_C57BL6NJ_T0072312.1 MGP_C57BL6NJ_G0030009.1 mouse_genomes_project 5 67728599 67753634 - MGP_C57BL6NJ_P0072312 Ugdh protein_coding protein_coding MGP_C57BL6NJ_T0072313.1 MGP_C57BL6NJ_G0030009.1 mouse_genomes_project 5 67728602 67742021 - Ugdh protein_coding retained_intron MGP_C57BL6NJ_T0072314.1 MGP_C57BL6NJ_G0030009.1 mouse_genomes_project 5 67734069 67739357 - Ugdh protein_coding retained_intron MGP_C57BL6NJ_T0072315.1 MGP_C57BL6NJ_G0030009.1 mouse_genomes_project 5 67739900 67746064 - MGP_C57BL6NJ_P0072315 Ugdh protein_coding protein_coding MGP_C57BL6NJ_T0073244.1 MGP_C57BL6NJ_G0030208.1 mouse_genomes_project 5 104526567 104641897 - MGP_C57BL6NJ_P0073244 Prkg2 protein_coding protein_coding MGP_C57BL6NJ_T0073245.1 MGP_C57BL6NJ_G0030208.1 mouse_genomes_project 5 104528040 104544632 - MGP_C57BL6NJ_P0073245 Prkg2 protein_coding protein_coding MGP_C57BL6NJ_T0073246.1 MGP_C57BL6NJ_G0030208.1 mouse_genomes_project 5 104528040 104544630 - MGP_C57BL6NJ_P0073246 Prkg2 protein_coding protein_coding MGP_C57BL6NJ_T0073247.1 MGP_C57BL6NJ_G0030208.1 mouse_genomes_project 5 104528492 104641581 - MGP_C57BL6NJ_P0073247 Prkg2 protein_coding protein_coding MGP_C57BL6NJ_T0073248.1 MGP_C57BL6NJ_G0030208.1 mouse_genomes_project 5 104548190 104568573 - Prkg2 protein_coding retained_intron MGP_C57BL6NJ_T0015526.1 MGP_C57BL6NJ_G0013571.1 mouse_genomes_project 5 121483611 121484659 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099114.1 MGP_C57BL6NJ_G0037178.1 mouse_genomes_project 5 54544091 54544205 - n-R5s172 rRNA rRNA MGP_C57BL6NJ_T0004948.1 MGP_C57BL6NJ_G0004264.1 mouse_genomes_project 5 122334335 122336913 + Hnf1aos2 antisense antisense MGP_C57BL6NJ_T0071506.1 MGP_C57BL6NJ_G0029872.1 mouse_genomes_project 5 33147532 33213113 + MGP_C57BL6NJ_P0071506 Slc5a1 protein_coding protein_coding MGP_C57BL6NJ_T0008384.1 MGP_C57BL6NJ_G0006832.1 mouse_genomes_project 5 96908468 96923671 + Gm26582 lincRNA lincRNA MGP_C57BL6NJ_T0008618.1 MGP_C57BL6NJ_G0006988.1 mouse_genomes_project 5 157327302 157333492 - B230303O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0075856.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148421525 148427876 - MGP_C57BL6NJ_P0075856 Gpc2 protein_coding protein_coding MGP_C57BL6NJ_T0075857.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148421527 148427856 - Gpc2 protein_coding retained_intron MGP_C57BL6NJ_T0075858.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148421527 148427833 - Gpc2 protein_coding retained_intron MGP_C57BL6NJ_T0075859.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148421527 148427853 - MGP_C57BL6NJ_P0075859 Gpc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075860.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148421530 148427836 - MGP_C57BL6NJ_P0075860 Gpc2 protein_coding protein_coding MGP_C57BL6NJ_T0075861.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148423398 148426108 - Gpc2 protein_coding retained_intron MGP_C57BL6NJ_T0075862.1 MGP_C57BL6NJ_G0030696.1 mouse_genomes_project 5 148424511 148427834 - Gpc2 protein_coding processed_transcript MGP_C57BL6NJ_T0010955.1 MGP_C57BL6NJ_G0009040.1 mouse_genomes_project 5 120487162 120487215 - Mir7229 miRNA miRNA MGP_C57BL6NJ_T0015443.1 MGP_C57BL6NJ_G0013488.1 mouse_genomes_project 5 91927398 91929450 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101731.1 MGP_C57BL6NJ_G0039777.1 mouse_genomes_project 5 56133399 56133528 + Gm24235 snoRNA snoRNA MGP_C57BL6NJ_T0008353.1 MGP_C57BL6NJ_G0006806.1 mouse_genomes_project 5 78565080 78577725 - Gm42800 lincRNA lincRNA MGP_C57BL6NJ_T0073178.1 MGP_C57BL6NJ_G0030189.1 mouse_genomes_project 5 98143685 98170626 - MGP_C57BL6NJ_P0073178 Ccni protein_coding protein_coding MGP_C57BL6NJ_T0073179.1 MGP_C57BL6NJ_G0030189.1 mouse_genomes_project 5 98144909 98151273 - MGP_C57BL6NJ_P0073179 Ccni protein_coding protein_coding MGP_C57BL6NJ_T0073180.1 MGP_C57BL6NJ_G0030189.1 mouse_genomes_project 5 98149060 98149828 - Ccni protein_coding retained_intron MGP_C57BL6NJ_T0073181.1 MGP_C57BL6NJ_G0030189.1 mouse_genomes_project 5 98149369 98167628 - MGP_C57BL6NJ_P0073181 Ccni protein_coding protein_coding MGP_C57BL6NJ_T0073182.1 MGP_C57BL6NJ_G0030189.1 mouse_genomes_project 5 98151171 98170559 - MGP_C57BL6NJ_P0073182 Ccni protein_coding protein_coding MGP_C57BL6NJ_T0073685.1 MGP_C57BL6NJ_G0030301.1 mouse_genomes_project 5 116165618 116202430 + MGP_C57BL6NJ_P0073685 Vmn2r17 protein_coding protein_coding MGP_C57BL6NJ_T0074013.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121624546 121641503 - MGP_C57BL6NJ_P0074013 Kctd10 protein_coding protein_coding MGP_C57BL6NJ_T0074014.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121625441 121641484 - MGP_C57BL6NJ_P0074014 Kctd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074015.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121626601 121641478 - MGP_C57BL6NJ_P0074015 Kctd10 protein_coding protein_coding MGP_C57BL6NJ_T0074016.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121626685 121633122 - Kctd10 protein_coding processed_transcript MGP_C57BL6NJ_T0074017.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121627862 121629649 - Kctd10 protein_coding retained_intron MGP_C57BL6NJ_T0074018.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121627882 121631187 - Kctd10 protein_coding retained_intron MGP_C57BL6NJ_T0074019.1 MGP_C57BL6NJ_G0030366.1 mouse_genomes_project 5 121627963 121630232 - Kctd10 protein_coding retained_intron MGP_C57BL6NJ_T0008668.1 MGP_C57BL6NJ_G0007025.1 mouse_genomes_project 5 163373141 163382263 + Gm43129 lincRNA lincRNA MGP_C57BL6NJ_T0008257.1 MGP_C57BL6NJ_G0006734.1 mouse_genomes_project 5 29532861 29537974 - Gm42450 lincRNA lincRNA MGP_C57BL6NJ_T0101762.1 MGP_C57BL6NJ_G0039808.1 mouse_genomes_project 5 117615810 117615943 - Gm26079 snoRNA snoRNA MGP_C57BL6NJ_T0010979.1 MGP_C57BL6NJ_G0009064.1 mouse_genomes_project 5 147289564 147289661 + Mir8116 miRNA miRNA MGP_C57BL6NJ_T0073135.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97317728 97337911 - MGP_C57BL6NJ_P0073135 Nup54 protein_coding protein_coding MGP_C57BL6NJ_T0073136.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97318397 97320161 - Nup54 protein_coding retained_intron MGP_C57BL6NJ_T0073137.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97325165 97327120 - Nup54 protein_coding retained_intron MGP_C57BL6NJ_T0073138.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97327938 97337238 - Nup54 protein_coding processed_transcript MGP_C57BL6NJ_T0073139.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97330217 97337783 - Nup54 protein_coding retained_intron MGP_C57BL6NJ_T0073140.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97330488 97337806 - MGP_C57BL6NJ_P0073140 Nup54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073141.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97333597 97337815 - MGP_C57BL6NJ_P0073141 Nup54 protein_coding protein_coding MGP_C57BL6NJ_T0073142.1 MGP_C57BL6NJ_G0030181.1 mouse_genomes_project 5 97333605 97337449 - MGP_C57BL6NJ_P0073142 Nup54 protein_coding protein_coding MGP_C57BL6NJ_T0076353.1 MGP_C57BL6NJ_G0030807.1 mouse_genomes_project 5 157317942 157323167 - MGP_C57BL6NJ_P0076353 Gm3402 protein_coding protein_coding MGP_C57BL6NJ_T0076358.1 MGP_C57BL6NJ_G0030807.1 mouse_genomes_project 5 157318119 157323139 - MGP_C57BL6NJ_P0076358 Gm3402 protein_coding protein_coding MGP_C57BL6NJ_T0076359.1 MGP_C57BL6NJ_G0030807.1 mouse_genomes_project 5 157318119 157323139 - MGP_C57BL6NJ_P0076359 Gm3402 protein_coding protein_coding MGP_C57BL6NJ_T0010958.1 MGP_C57BL6NJ_G0009043.1 mouse_genomes_project 5 122020495 122020559 + Mir7028 miRNA miRNA MGP_C57BL6NJ_T0004801.1 MGP_C57BL6NJ_G0004153.1 mouse_genomes_project 5 19844015 19849420 + A630072M18Rik antisense antisense MGP_C57BL6NJ_T0076025.1 MGP_C57BL6NJ_G0030731.1 mouse_genomes_project 5 150984531 151012747 + MGP_C57BL6NJ_P0076025 Chst12 protein_coding protein_coding MGP_C57BL6NJ_T0076026.1 MGP_C57BL6NJ_G0030731.1 mouse_genomes_project 5 150984556 151011176 + MGP_C57BL6NJ_P0076026 Chst12 protein_coding protein_coding MGP_C57BL6NJ_T0008235.1 MGP_C57BL6NJ_G0006721.1 mouse_genomes_project 5 22516570 22518063 + 4930580E04Rik lincRNA lincRNA MGP_C57BL6NJ_T0075137.1 MGP_C57BL6NJ_G0030564.1 mouse_genomes_project 5 139098736 139108835 - MGP_C57BL6NJ_P0075137 Chchd2 protein_coding protein_coding MGP_C57BL6NJ_T0075138.1 MGP_C57BL6NJ_G0030564.1 mouse_genomes_project 5 139098739 139108638 - Chchd2 protein_coding retained_intron MGP_C57BL6NJ_T0073454.1 MGP_C57BL6NJ_G0030255.1 mouse_genomes_project 5 111788433 111860500 + MGP_C57BL6NJ_P0073454 Lrrc8b protein_coding protein_coding MGP_C57BL6NJ_T0008356.1 MGP_C57BL6NJ_G0006808.1 mouse_genomes_project 5 78961831 78967159 - Gm43100 lincRNA lincRNA MGP_C57BL6NJ_T0073762.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117260276 117354065 - MGP_C57BL6NJ_P0073762 Fbrsl1 protein_coding protein_coding MGP_C57BL6NJ_T0073763.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117261313 117354048 - MGP_C57BL6NJ_P0073763 Fbrsl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073764.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117261564 117353729 - MGP_C57BL6NJ_P0073764 Fbrsl1 protein_coding protein_coding MGP_C57BL6NJ_T0073765.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117281140 117337187 - MGP_C57BL6NJ_P0073765 Fbrsl1 protein_coding protein_coding MGP_C57BL6NJ_T0073766.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117334047 117336035 - Fbrsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0073767.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117336167 117337494 - Fbrsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0073768.1 MGP_C57BL6NJ_G0030317.1 mouse_genomes_project 5 117336167 117354065 - MGP_C57BL6NJ_P0073768 Fbrsl1 protein_coding protein_coding MGP_C57BL6NJ_T0008364.1 MGP_C57BL6NJ_G0006815.1 mouse_genomes_project 5 80463799 80465581 - Gm42757 lincRNA lincRNA MGP_C57BL6NJ_T0001640.1 MGP_C57BL6NJ_G0001536.1 mouse_genomes_project 5 33000239 33001488 + TEC TEC MGP_C57BL6NJ_T0001647.1 MGP_C57BL6NJ_G0001543.1 mouse_genomes_project 5 35576221 35576676 + TEC TEC MGP_C57BL6NJ_T0073506.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458211 113479764 + MGP_C57BL6NJ_P0073506 Cdc7 protein_coding protein_coding MGP_C57BL6NJ_T0073507.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458211 113479765 + MGP_C57BL6NJ_P0073507 Cdc7 protein_coding protein_coding MGP_C57BL6NJ_T0073508.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458270 113479765 + MGP_C57BL6NJ_P0073508 Cdc7 protein_coding protein_coding MGP_C57BL6NJ_T0073509.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458281 113479765 + Cdc7 protein_coding retained_intron MGP_C57BL6NJ_T0073510.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458450 113479764 + MGP_C57BL6NJ_P0073510 Cdc7 protein_coding protein_coding MGP_C57BL6NJ_T0073511.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113458907 113478688 + MGP_C57BL6NJ_P0073511 Cdc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073512.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113469882 113470529 + Cdc7 protein_coding processed_transcript MGP_C57BL6NJ_T0073513.1 MGP_C57BL6NJ_G0030263.1 mouse_genomes_project 5 113470574 113474666 + Cdc7 protein_coding retained_intron MGP_C57BL6NJ_T0008297.1 MGP_C57BL6NJ_G0006759.1 mouse_genomes_project 5 43690381 43694706 - Gm42711 lincRNA lincRNA MGP_C57BL6NJ_T0015286.1 MGP_C57BL6NJ_G0013331.1 mouse_genomes_project 5 22517081 22517706 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071304.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30982013 30987886 - MGP_C57BL6NJ_P0071304 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071305.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30982014 30987595 - MGP_C57BL6NJ_P0071305 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071306.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30982022 30987464 - MGP_C57BL6NJ_P0071306 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071307.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30982023 30987470 - MGP_C57BL6NJ_P0071307 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071308.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30982024 30986103 - MGP_C57BL6NJ_P0071308 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071309.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30983857 30985317 - Eif2b4 protein_coding retained_intron MGP_C57BL6NJ_T0071310.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30984024 30984372 - MGP_C57BL6NJ_P0071310 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071311.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30984044 30985607 - MGP_C57BL6NJ_P0071311 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071312.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30984853 30985655 - MGP_C57BL6NJ_P0071312 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0071313.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30985655 30987595 - Eif2b4 protein_coding processed_transcript MGP_C57BL6NJ_T0071314.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30985785 30987455 - Eif2b4 protein_coding retained_intron MGP_C57BL6NJ_T0071315.1 MGP_C57BL6NJ_G0029845.1 mouse_genomes_project 5 30986173 30987874 - MGP_C57BL6NJ_P0071315 Eif2b4 protein_coding protein_coding MGP_C57BL6NJ_T0010977.1 MGP_C57BL6NJ_G0009062.1 mouse_genomes_project 5 146250933 146251021 - Mir721 miRNA miRNA MGP_C57BL6NJ_T0073041.1 MGP_C57BL6NJ_G0030159.1 mouse_genomes_project 5 95549053 95552551 + Cxcl3 protein_coding retained_intron MGP_C57BL6NJ_T0073042.1 MGP_C57BL6NJ_G0030159.1 mouse_genomes_project 5 95549053 95551044 + MGP_C57BL6NJ_P0073042 Cxcl3 protein_coding protein_coding MGP_C57BL6NJ_T0074079.1 MGP_C57BL6NJ_G0030377.1 mouse_genomes_project 5 122118863 122144464 - MGP_C57BL6NJ_P0074079 Gm20499 protein_coding protein_coding MGP_C57BL6NJ_T0001986.1 MGP_C57BL6NJ_G0001878.1 mouse_genomes_project 5 140305064 140306228 - TEC TEC MGP_C57BL6NJ_T0073740.1 MGP_C57BL6NJ_G0030313.1 mouse_genomes_project 5 117167639 117181362 - MGP_C57BL6NJ_P0073740 Pxmp2 protein_coding protein_coding MGP_C57BL6NJ_T0073741.1 MGP_C57BL6NJ_G0030313.1 mouse_genomes_project 5 117167652 117181197 - MGP_C57BL6NJ_P0073741 Pxmp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073742.1 MGP_C57BL6NJ_G0030313.1 mouse_genomes_project 5 117175975 117181178 - Pxmp2 protein_coding processed_transcript MGP_C57BL6NJ_T0073743.1 MGP_C57BL6NJ_G0030313.1 mouse_genomes_project 5 117178699 117181295 - Pxmp2 protein_coding retained_intron MGP_C57BL6NJ_T0004817.1 MGP_C57BL6NJ_G0004166.1 mouse_genomes_project 5 30925434 30927010 - Gm15469 antisense antisense MGP_C57BL6NJ_T0015365.1 MGP_C57BL6NJ_G0013410.1 mouse_genomes_project 5 55937352 55937506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005049.1 MGP_C57BL6NJ_G0004333.1 mouse_genomes_project 5 158469038 158516764 - 2210019I11Rik antisense antisense MGP_C57BL6NJ_T0005050.1 MGP_C57BL6NJ_G0004333.1 mouse_genomes_project 5 158471175 158516745 - 2210019I11Rik antisense antisense MGP_C57BL6NJ_T0005051.1 MGP_C57BL6NJ_G0004333.1 mouse_genomes_project 5 158479157 158516238 - 2210019I11Rik antisense antisense MGP_C57BL6NJ_T0073478.1 MGP_C57BL6NJ_G0030259.1 mouse_genomes_project 5 112917976 112923620 - MGP_C57BL6NJ_P0073478 Barhl2 protein_coding protein_coding MGP_C57BL6NJ_T0015525.1 MGP_C57BL6NJ_G0013570.1 mouse_genomes_project 5 121340363 121341428 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015265.1 MGP_C57BL6NJ_G0013310.1 mouse_genomes_project 5 18002842 18003083 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008582.1 MGP_C57BL6NJ_G0006959.1 mouse_genomes_project 5 138562911 138564071 + Gm43001 lincRNA lincRNA MGP_C57BL6NJ_T0008583.1 MGP_C57BL6NJ_G0006959.1 mouse_genomes_project 5 138563469 138563982 + Gm43001 lincRNA lincRNA MGP_C57BL6NJ_T0099487.1 MGP_C57BL6NJ_G0037542.1 mouse_genomes_project 5 155170359 155173485 + Dmrt1i sense_intronic sense_intronic MGP_C57BL6NJ_T0099488.1 MGP_C57BL6NJ_G0037542.1 mouse_genomes_project 5 155170961 155173442 + Dmrt1i sense_intronic sense_intronic MGP_C57BL6NJ_T0099489.1 MGP_C57BL6NJ_G0037542.1 mouse_genomes_project 5 155170961 155173442 + Dmrt1i sense_intronic sense_intronic MGP_C57BL6NJ_T0008358.1 MGP_C57BL6NJ_G0006810.1 mouse_genomes_project 5 79068418 79072137 - Gm28865 lincRNA lincRNA MGP_C57BL6NJ_T0074958.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133395724 133415489 + MGP_C57BL6NJ_P0074958 Gtf2h3 protein_coding protein_coding MGP_C57BL6NJ_T0074959.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133395726 133398257 + Gtf2h3 protein_coding retained_intron MGP_C57BL6NJ_T0074960.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133395750 133410435 + Gtf2h3 protein_coding retained_intron MGP_C57BL6NJ_T0074961.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133400431 133413404 + Gtf2h3 protein_coding retained_intron MGP_C57BL6NJ_T0074962.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133408186 133414396 + Gtf2h3 protein_coding retained_intron MGP_C57BL6NJ_T0074963.1 MGP_C57BL6NJ_G0030531.1 mouse_genomes_project 5 133412072 133413413 + Gtf2h3 protein_coding retained_intron MGP_C57BL6NJ_T0008310.1 MGP_C57BL6NJ_G0006771.1 mouse_genomes_project 5 51563179 51711336 + Gm43016 lincRNA lincRNA MGP_C57BL6NJ_T0008234.1 MGP_C57BL6NJ_G0006720.1 mouse_genomes_project 5 22451088 22472353 - Gm42951 lincRNA lincRNA MGP_C57BL6NJ_T0008602.1 MGP_C57BL6NJ_G0006975.1 mouse_genomes_project 5 148356813 148357278 + Gm43645 lincRNA lincRNA MGP_C57BL6NJ_T0004835.1 MGP_C57BL6NJ_G0004183.1 mouse_genomes_project 5 38668850 38672415 - Gm26560 antisense antisense MGP_C57BL6NJ_T0015610.1 MGP_C57BL6NJ_G0013655.1 mouse_genomes_project 5 159197574 159198049 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002032.1 MGP_C57BL6NJ_G0001923.1 mouse_genomes_project 5 151879610 151880291 - TEC TEC MGP_C57BL6NJ_T0004937.1 MGP_C57BL6NJ_G0004256.1 mouse_genomes_project 5 119451193 119454464 - Gm20636 antisense antisense MGP_C57BL6NJ_T0008476.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119269539 119285695 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0008477.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119269541 119285248 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0008479.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119277680 119284944 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0008480.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119277971 119285229 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0008481.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119278169 119284975 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0008482.1 MGP_C57BL6NJ_G0006894.1 mouse_genomes_project 5 119284405 119284941 - Miat lincRNA lincRNA MGP_C57BL6NJ_T0071074.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28800552 28961277 - MGP_C57BL6NJ_P0071074 Lmbr1 protein_coding protein_coding MGP_C57BL6NJ_T0071075.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28800564 28961283 - MGP_C57BL6NJ_P0071075 Lmbr1 protein_coding protein_coding MGP_C57BL6NJ_T0071076.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28802869 28961195 - MGP_C57BL6NJ_P0071076 Lmbr1 protein_coding protein_coding MGP_C57BL6NJ_T0071077.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28803123 28961277 - MGP_C57BL6NJ_P0071077 Lmbr1 protein_coding protein_coding MGP_C57BL6NJ_T0071078.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28803591 28961223 - MGP_C57BL6NJ_P0071078 Lmbr1 protein_coding protein_coding MGP_C57BL6NJ_T0071079.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28805768 28870268 - MGP_C57BL6NJ_P0071079 Lmbr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071080.1 MGP_C57BL6NJ_G0029804.1 mouse_genomes_project 5 28833801 28945494 - Lmbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0001695.1 MGP_C57BL6NJ_G0001591.1 mouse_genomes_project 5 49535691 49538176 - TEC TEC MGP_C57BL6NJ_T0074625.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131038284 131124605 - MGP_C57BL6NJ_P0074625 Ift81 protein_coding protein_coding MGP_C57BL6NJ_T0074626.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131038288 131065158 - Ift81 protein_coding retained_intron MGP_C57BL6NJ_T0074627.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131077947 131084285 - Ift81 protein_coding processed_transcript MGP_C57BL6NJ_T0074628.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131101315 131113557 - MGP_C57BL6NJ_P0074628 Ift81 protein_coding protein_coding MGP_C57BL6NJ_T0074629.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131112245 131124593 - Ift81 protein_coding retained_intron MGP_C57BL6NJ_T0074630.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131112375 131124532 - MGP_C57BL6NJ_P0074630 Ift81 protein_coding protein_coding MGP_C57BL6NJ_T0074631.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131112410 131124588 - MGP_C57BL6NJ_P0074631 Ift81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074632.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131115010 131117455 - Ift81 protein_coding retained_intron MGP_C57BL6NJ_T0074633.1 MGP_C57BL6NJ_G0030483.1 mouse_genomes_project 5 131117118 131124603 - MGP_C57BL6NJ_P0074633 Ift81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001669.1 MGP_C57BL6NJ_G0001565.1 mouse_genomes_project 5 44916737 44920198 - TEC TEC MGP_C57BL6NJ_T0001646.1 MGP_C57BL6NJ_G0001542.1 mouse_genomes_project 5 35570796 35572036 - TEC TEC MGP_C57BL6NJ_T0074020.1 MGP_C57BL6NJ_G0030367.1 mouse_genomes_project 5 121641601 121682203 + MGP_C57BL6NJ_P0074020 Ube3b protein_coding protein_coding MGP_C57BL6NJ_T0074021.1 MGP_C57BL6NJ_G0030367.1 mouse_genomes_project 5 121641820 121682202 + MGP_C57BL6NJ_P0074021 Ube3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074022.1 MGP_C57BL6NJ_G0030367.1 mouse_genomes_project 5 121641827 121653194 + MGP_C57BL6NJ_P0074022 Ube3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074023.1 MGP_C57BL6NJ_G0030367.1 mouse_genomes_project 5 121659818 121682202 + MGP_C57BL6NJ_P0074023 Ube3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074024.1 MGP_C57BL6NJ_G0030367.1 mouse_genomes_project 5 121663759 121672170 + Ube3b protein_coding processed_transcript MGP_C57BL6NJ_T0103188.1 MGP_C57BL6NJ_G0040982.1 mouse_genomes_project 5 488283 488460 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0076017.1 MGP_C57BL6NJ_G0030729.1 mouse_genomes_project 5 150787440 150844108 - MGP_C57BL6NJ_P0076017 Snx8 protein_coding protein_coding MGP_C57BL6NJ_T0076018.1 MGP_C57BL6NJ_G0030729.1 mouse_genomes_project 5 150787445 150807211 - MGP_C57BL6NJ_P0076018 Snx8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076019.1 MGP_C57BL6NJ_G0030729.1 mouse_genomes_project 5 150799584 150800343 - Snx8 protein_coding retained_intron MGP_C57BL6NJ_T0076020.1 MGP_C57BL6NJ_G0030729.1 mouse_genomes_project 5 150800260 150815000 - MGP_C57BL6NJ_P0076020 Snx8 protein_coding protein_coding MGP_C57BL6NJ_T0076021.1 MGP_C57BL6NJ_G0030729.1 mouse_genomes_project 5 150800276 150844108 - MGP_C57BL6NJ_P0076021 Snx8 protein_coding protein_coding MGP_C57BL6NJ_T0005025.1 MGP_C57BL6NJ_G0004318.1 mouse_genomes_project 5 147645150 147647534 + Gm36266 antisense antisense MGP_C57BL6NJ_T0103223.1 MGP_C57BL6NJ_G0041017.1 mouse_genomes_project 5 156997730 156999671 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0070729.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18031894 19578542 + MGP_C57BL6NJ_P0070729 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070730.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18031904 18616318 + Magi2 protein_coding processed_transcript MGP_C57BL6NJ_T0070731.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18031909 19578526 + MGP_C57BL6NJ_P0070731 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070732.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18031913 19580396 + MGP_C57BL6NJ_P0070732 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070733.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18032255 18036953 + Magi2 protein_coding retained_intron MGP_C57BL6NJ_T0070734.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18757177 19580415 + MGP_C57BL6NJ_P0070734 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070735.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18757374 19578548 + MGP_C57BL6NJ_P0070735 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070736.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 18757590 19042823 + MGP_C57BL6NJ_P0070736 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070737.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 19050273 19321352 + Magi2 protein_coding processed_transcript MGP_C57BL6NJ_T0070738.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 19075577 19522080 + Magi2 protein_coding retained_intron MGP_C57BL6NJ_T0070739.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 19395590 19466057 + Magi2 protein_coding processed_transcript MGP_C57BL6NJ_T0070740.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 19467743 19577976 + MGP_C57BL6NJ_P0070740 Magi2 protein_coding protein_coding MGP_C57BL6NJ_T0070741.1 MGP_C57BL6NJ_G0029739.1 mouse_genomes_project 5 19577291 19578426 + Magi2 protein_coding processed_transcript MGP_C57BL6NJ_T0001720.1 MGP_C57BL6NJ_G0001615.1 mouse_genomes_project 5 51051880 51054447 + TEC TEC MGP_C57BL6NJ_T0015462.1 MGP_C57BL6NJ_G0013507.1 mouse_genomes_project 5 96642048 96642543 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076233.1 MGP_C57BL6NJ_G0030776.1 mouse_genomes_project 5 154893733 154986185 + MGP_C57BL6NJ_P0076233 Lmtk2 protein_coding protein_coding MGP_C57BL6NJ_T0074831.1 MGP_C57BL6NJ_G0030510.1 mouse_genomes_project 5 132591217 132594502 - MGP_C57BL6NJ_P0074831 Hcar1 protein_coding protein_coding MGP_C57BL6NJ_T0001909.1 MGP_C57BL6NJ_G0001802.1 mouse_genomes_project 5 121107494 121111998 - TEC TEC MGP_C57BL6NJ_T0008245.1 MGP_C57BL6NJ_G0006727.1 mouse_genomes_project 5 24859231 24860685 + 1700096K18Rik lincRNA lincRNA MGP_C57BL6NJ_T0001835.1 MGP_C57BL6NJ_G0001728.1 mouse_genomes_project 5 78159125 78161971 - TEC TEC MGP_C57BL6NJ_T0075706.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147634939 147642453 - Pcolce protein_coding retained_intron MGP_C57BL6NJ_T0075707.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147634939 147642532 - MGP_C57BL6NJ_P0075707 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075708.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147634941 147635635 - Pcolce protein_coding retained_intron MGP_C57BL6NJ_T0075709.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147634941 147641519 - MGP_C57BL6NJ_P0075709 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075710.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147634944 147642421 - MGP_C57BL6NJ_P0075710 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075711.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147636858 147639237 - Pcolce protein_coding retained_intron MGP_C57BL6NJ_T0075712.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147636925 147642388 - Pcolce protein_coding processed_transcript MGP_C57BL6NJ_T0075713.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147638478 147641747 - MGP_C57BL6NJ_P0075713 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075714.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147638554 147646061 - MGP_C57BL6NJ_P0075714 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075715.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147638554 147646083 - MGP_C57BL6NJ_P0075715 Pcolce protein_coding protein_coding MGP_C57BL6NJ_T0075716.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147638765 147642364 - Pcolce protein_coding retained_intron MGP_C57BL6NJ_T0075717.1 MGP_C57BL6NJ_G0030664.1 mouse_genomes_project 5 147639983 147642371 - Pcolce protein_coding processed_transcript MGP_C57BL6NJ_T0008444.1 MGP_C57BL6NJ_G0006877.1 mouse_genomes_project 5 114973499 114974437 - Gm42518 lincRNA lincRNA MGP_C57BL6NJ_T0070573.1 MGP_C57BL6NJ_G0029710.1 mouse_genomes_project 5 5397688 5421287 + MGP_C57BL6NJ_P0070573 Steap4 protein_coding protein_coding MGP_C57BL6NJ_T0072267.1 MGP_C57BL6NJ_G0030000.1 mouse_genomes_project 5 67237309 67246410 - MGP_C57BL6NJ_P0072267 Tlr6 protein_coding protein_coding MGP_C57BL6NJ_T0072268.1 MGP_C57BL6NJ_G0030000.1 mouse_genomes_project 5 67241585 67246460 - MGP_C57BL6NJ_P0072268 Tlr6 protein_coding protein_coding MGP_C57BL6NJ_T0015251.1 MGP_C57BL6NJ_G0013296.1 mouse_genomes_project 5 10664958 10665721 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004822.1 MGP_C57BL6NJ_G0004170.1 mouse_genomes_project 5 32403803 32552983 - antisense antisense MGP_C57BL6NJ_T0001895.1 MGP_C57BL6NJ_G0001788.1 mouse_genomes_project 5 118120576 118122954 + TEC TEC MGP_C57BL6NJ_T0008329.1 MGP_C57BL6NJ_G0006789.1 mouse_genomes_project 5 66715804 66722764 + C030018K13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008330.1 MGP_C57BL6NJ_G0006789.1 mouse_genomes_project 5 66715810 66718543 + C030018K13Rik lincRNA lincRNA MGP_C57BL6NJ_T0008331.1 MGP_C57BL6NJ_G0006789.1 mouse_genomes_project 5 66715831 66721262 + C030018K13Rik lincRNA lincRNA MGP_C57BL6NJ_T0073877.1 MGP_C57BL6NJ_G0030339.1 mouse_genomes_project 5 119527311 119529624 + MGP_C57BL6NJ_P0073877 Gm6588 protein_coding protein_coding MGP_C57BL6NJ_T0001596.1 MGP_C57BL6NJ_G0001495.1 mouse_genomes_project 5 13276653 13278924 + TEC TEC MGP_C57BL6NJ_T0073689.1 MGP_C57BL6NJ_G0030303.1 mouse_genomes_project 5 116597801 116599312 - MGP_C57BL6NJ_P0073689 4930522L14Rik protein_coding protein_coding MGP_C57BL6NJ_T0008339.1 MGP_C57BL6NJ_G0006795.1 mouse_genomes_project 5 75419012 75419917 - AU023070 lincRNA lincRNA MGP_C57BL6NJ_T0075963.1 MGP_C57BL6NJ_G0030715.1 mouse_genomes_project 5 149701171 149711508 + MGP_C57BL6NJ_P0075963 C130050O18Rik protein_coding protein_coding MGP_C57BL6NJ_T0075964.1 MGP_C57BL6NJ_G0030715.1 mouse_genomes_project 5 149702278 149711505 + MGP_C57BL6NJ_P0075964 C130050O18Rik protein_coding protein_coding MGP_C57BL6NJ_T0075965.1 MGP_C57BL6NJ_G0030715.1 mouse_genomes_project 5 149702356 149711510 + MGP_C57BL6NJ_P0075965 C130050O18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072688.1 MGP_C57BL6NJ_G0030072.1 mouse_genomes_project 5 79421867 79434905 + Tmem165 protein_coding processed_transcript MGP_C57BL6NJ_T0072689.1 MGP_C57BL6NJ_G0030072.1 mouse_genomes_project 5 79421935 79451093 + MGP_C57BL6NJ_P0072689 Tmem165 protein_coding protein_coding MGP_C57BL6NJ_T0072690.1 MGP_C57BL6NJ_G0030072.1 mouse_genomes_project 5 79438654 79444365 + Tmem165 protein_coding retained_intron MGP_C57BL6NJ_T0072691.1 MGP_C57BL6NJ_G0030072.1 mouse_genomes_project 5 79443329 79445243 + Tmem165 protein_coding processed_transcript MGP_C57BL6NJ_T0018639.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117040325 117048368 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018640.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117040937 117063357 - Gm15787 processed_transcript processed_transcript MGP_C57BL6NJ_T0018641.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117048378 117063296 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018642.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117053431 117063357 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018643.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117054118 117063319 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018644.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117054180 117055820 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018645.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117055521 117063357 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0018646.1 MGP_C57BL6NJ_G0016002.1 mouse_genomes_project 5 117056044 117063293 - Gm15787 processed_transcript antisense MGP_C57BL6NJ_T0001892.1 MGP_C57BL6NJ_G0001785.1 mouse_genomes_project 5 116597291 116597979 - TEC TEC MGP_C57BL6NJ_T0008376.1 MGP_C57BL6NJ_G0006824.1 mouse_genomes_project 5 92531218 92536599 + BC037156 lincRNA lincRNA MGP_C57BL6NJ_T0015414.1 MGP_C57BL6NJ_G0013459.1 mouse_genomes_project 5 76414133 76415139 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015313.1 MGP_C57BL6NJ_G0013358.1 mouse_genomes_project 5 29435969 29436657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004912.1 MGP_C57BL6NJ_G0004239.1 mouse_genomes_project 5 106611920 106618940 - 4930458D05Rik antisense antisense MGP_C57BL6NJ_T0074420.1 MGP_C57BL6NJ_G0030448.1 mouse_genomes_project 5 128967510 128978278 + MGP_C57BL6NJ_P0074420 Oas1h protein_coding protein_coding MGP_C57BL6NJ_T0074421.1 MGP_C57BL6NJ_G0030448.1 mouse_genomes_project 5 128967527 128977913 + MGP_C57BL6NJ_P0074421 Oas1h protein_coding protein_coding MGP_C57BL6NJ_T0015382.1 MGP_C57BL6NJ_G0013427.1 mouse_genomes_project 5 61905679 61905873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076361.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157347975 157360332 - MGP_C57BL6NJ_P0076361 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076362.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157347979 157359678 - MGP_C57BL6NJ_P0076362 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076363.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157348740 157359753 - MGP_C57BL6NJ_P0076363 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076364.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157350086 157356766 - MGP_C57BL6NJ_P0076364 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076365.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157350459 157360195 - MGP_C57BL6NJ_P0076365 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076366.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157350487 157359712 - MGP_C57BL6NJ_P0076366 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076367.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157350636 157359725 - MGP_C57BL6NJ_P0076367 Rnf6 protein_coding protein_coding MGP_C57BL6NJ_T0076368.1 MGP_C57BL6NJ_G0030811.1 mouse_genomes_project 5 157356855 157359723 - Rnf6 protein_coding processed_transcript MGP_C57BL6NJ_T0073659.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115311599 115338300 + MGP_C57BL6NJ_P0073659 Idua protein_coding protein_coding MGP_C57BL6NJ_T0073660.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115321685 115338305 + MGP_C57BL6NJ_P0073660 Idua protein_coding protein_coding MGP_C57BL6NJ_T0073661.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115321685 115338300 + MGP_C57BL6NJ_P0073661 Idua protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073662.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115321874 115334756 + Idua protein_coding retained_intron MGP_C57BL6NJ_T0073663.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115321890 115338300 + MGP_C57BL6NJ_P0073663 Idua protein_coding protein_coding MGP_C57BL6NJ_T0073664.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115321926 115338147 + MGP_C57BL6NJ_P0073664 Idua protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073665.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115322038 115333252 + Idua protein_coding processed_transcript MGP_C57BL6NJ_T0073670.1 MGP_C57BL6NJ_G0030292.1 mouse_genomes_project 5 115336353 115337065 + Idua protein_coding retained_intron MGP_C57BL6NJ_T0099272.1 MGP_C57BL6NJ_G0037336.1 mouse_genomes_project 5 132191720 132191857 + Gm24682 scaRNA scaRNA MGP_C57BL6NJ_T0076171.1 MGP_C57BL6NJ_G0030763.1 mouse_genomes_project 5 154234441 154279223 + MGP_C57BL6NJ_P0076171 Daglb protein_coding protein_coding MGP_C57BL6NJ_T0076172.1 MGP_C57BL6NJ_G0030763.1 mouse_genomes_project 5 154234470 154245197 + Daglb protein_coding retained_intron MGP_C57BL6NJ_T0076173.1 MGP_C57BL6NJ_G0030763.1 mouse_genomes_project 5 154242770 154247648 + Daglb protein_coding retained_intron MGP_C57BL6NJ_T0076174.1 MGP_C57BL6NJ_G0030763.1 mouse_genomes_project 5 154259902 154263219 + Daglb protein_coding retained_intron MGP_C57BL6NJ_T0010992.1 MGP_C57BL6NJ_G0009077.1 mouse_genomes_project 5 155764504 155764589 - Mir7039 miRNA miRNA MGP_C57BL6NJ_T0010980.1 MGP_C57BL6NJ_G0009065.1 mouse_genomes_project 5 147292408 147292473 - Mir7036 miRNA miRNA MGP_C57BL6NJ_T0002005.1 MGP_C57BL6NJ_G0001897.1 mouse_genomes_project 5 141858927 141861790 - TEC TEC MGP_C57BL6NJ_T0015485.1 MGP_C57BL6NJ_G0013530.1 mouse_genomes_project 5 109289880 109291750 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001681.1 MGP_C57BL6NJ_G0001577.1 mouse_genomes_project 5 46330142 46332182 + TEC TEC MGP_C57BL6NJ_T0008289.1 MGP_C57BL6NJ_G0006753.1 mouse_genomes_project 5 39664217 39721750 - Gm43453 lincRNA lincRNA MGP_C57BL6NJ_T0008656.1 MGP_C57BL6NJ_G0007017.1 mouse_genomes_project 5 162141461 162143842 - Gm5 lincRNA lincRNA MGP_C57BL6NJ_T0008657.1 MGP_C57BL6NJ_G0007017.1 mouse_genomes_project 5 162141529 162144013 - Gm5 lincRNA lincRNA MGP_C57BL6NJ_T0076415.1 MGP_C57BL6NJ_G0030825.1 mouse_genomes_project 5 158561970 158569367 - MGP_C57BL6NJ_P0076415 Urad protein_coding protein_coding MGP_C57BL6NJ_T0015345.1 MGP_C57BL6NJ_G0013390.1 mouse_genomes_project 5 42579033 42580309 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076354.1 MGP_C57BL6NJ_G0030808.1 mouse_genomes_project 5 157317942 157323168 - MGP_C57BL6NJ_P0076354 Gm3409 protein_coding protein_coding MGP_C57BL6NJ_T0076360.1 MGP_C57BL6NJ_G0030808.1 mouse_genomes_project 5 157318119 157323167 - MGP_C57BL6NJ_P0076360 Gm3409 protein_coding protein_coding MGP_C57BL6NJ_T0001809.1 MGP_C57BL6NJ_G0001703.1 mouse_genomes_project 5 71882483 71883514 - TEC TEC MGP_C57BL6NJ_T0001852.1 MGP_C57BL6NJ_G0001745.1 mouse_genomes_project 5 98048901 98051038 + TEC TEC MGP_C57BL6NJ_T0011877.1 MGP_C57BL6NJ_G0009962.1 mouse_genomes_project 5 149601110 149601387 + Gm27316 misc_RNA misc_RNA MGP_C57BL6NJ_T0015359.1 MGP_C57BL6NJ_G0013404.1 mouse_genomes_project 5 51533269 51534011 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073676.1 MGP_C57BL6NJ_G0030295.1 mouse_genomes_project 5 115396799 115416264 - MGP_C57BL6NJ_P0073676 Rnf212 protein_coding protein_coding MGP_C57BL6NJ_T0073677.1 MGP_C57BL6NJ_G0030295.1 mouse_genomes_project 5 115396823 115417734 - MGP_C57BL6NJ_P0073677 Rnf212 protein_coding protein_coding MGP_C57BL6NJ_T0073678.1 MGP_C57BL6NJ_G0030295.1 mouse_genomes_project 5 115397262 115448138 - MGP_C57BL6NJ_P0073678 Rnf212 protein_coding protein_coding MGP_C57BL6NJ_T0073679.1 MGP_C57BL6NJ_G0030295.1 mouse_genomes_project 5 115399095 115416264 - MGP_C57BL6NJ_P0073679 Rnf212 protein_coding protein_coding MGP_C57BL6NJ_T0001699.1 MGP_C57BL6NJ_G0001595.1 mouse_genomes_project 5 49740336 49742677 - TEC TEC MGP_C57BL6NJ_T0074044.1 MGP_C57BL6NJ_G0030372.1 mouse_genomes_project 5 121963717 121985590 - MGP_C57BL6NJ_P0074044 Gltp protein_coding protein_coding MGP_C57BL6NJ_T0074045.1 MGP_C57BL6NJ_G0030372.1 mouse_genomes_project 5 121964402 121985547 - MGP_C57BL6NJ_P0074045 Gltp protein_coding protein_coding MGP_C57BL6NJ_T0074046.1 MGP_C57BL6NJ_G0030372.1 mouse_genomes_project 5 121964547 121985514 - MGP_C57BL6NJ_P0074046 Gltp protein_coding protein_coding MGP_C57BL6NJ_T0015565.1 MGP_C57BL6NJ_G0013610.1 mouse_genomes_project 5 147631464 147632009 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004911.1 MGP_C57BL6NJ_G0004238.1 mouse_genomes_project 5 106423916 106430549 + Gm15777 antisense antisense MGP_C57BL6NJ_T0010924.1 MGP_C57BL6NJ_G0009009.1 mouse_genomes_project 5 35180291 35180358 + Mir3097 miRNA miRNA MGP_C57BL6NJ_T0008223.1 MGP_C57BL6NJ_G0006714.1 mouse_genomes_project 5 14522596 14533544 - Gm3510 lincRNA lincRNA MGP_C57BL6NJ_T0099490.1 MGP_C57BL6NJ_G0037543.1 mouse_genomes_project 5 160964544 160966265 + 4933425D22Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0076398.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158147867 158161484 - MGP_C57BL6NJ_P0076398 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0076399.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158150814 158161486 - MGP_C57BL6NJ_P0076399 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0076400.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158151661 158161496 - MGP_C57BL6NJ_P0076400 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0076401.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158151661 158161448 - MGP_C57BL6NJ_P0076401 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0076402.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158156635 158161442 - MGP_C57BL6NJ_P0076402 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0076403.1 MGP_C57BL6NJ_G0030819.1 mouse_genomes_project 5 158156646 158161499 - MGP_C57BL6NJ_P0076403 Mtif3 protein_coding protein_coding MGP_C57BL6NJ_T0101729.1 MGP_C57BL6NJ_G0039775.1 mouse_genomes_project 5 39951181 39951310 - Gm25377 snoRNA snoRNA MGP_C57BL6NJ_T0103206.1 MGP_C57BL6NJ_G0041000.1 mouse_genomes_project 5 91954575 91956237 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008242.1 MGP_C57BL6NJ_G0006724.1 mouse_genomes_project 5 23668915 23669497 + 2310074N15Rik lincRNA lincRNA MGP_C57BL6NJ_T0072870.1 MGP_C57BL6NJ_G0030106.1 mouse_genomes_project 5 91368293 91386763 - MGP_C57BL6NJ_P0072870 Ugt2b34 protein_coding protein_coding MGP_C57BL6NJ_T0072871.1 MGP_C57BL6NJ_G0030106.1 mouse_genomes_project 5 91368293 91386763 - MGP_C57BL6NJ_P0072871 Ugt2b34 protein_coding protein_coding MGP_C57BL6NJ_T0001722.1 MGP_C57BL6NJ_G0001617.1 mouse_genomes_project 5 52549899 52551453 - TEC TEC MGP_C57BL6NJ_T0072195.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54683028 54882934 + MGP_C57BL6NJ_P0072195 protein_coding protein_coding MGP_C57BL6NJ_T0072196.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54780766 54782285 + protein_coding retained_intron MGP_C57BL6NJ_T0072197.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54851325 54877644 + protein_coding processed_transcript MGP_C57BL6NJ_T0072198.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54856803 54873687 + protein_coding processed_transcript MGP_C57BL6NJ_T0072199.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54856966 54873687 + protein_coding processed_transcript MGP_C57BL6NJ_T0072200.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54870253 54873689 + protein_coding retained_intron MGP_C57BL6NJ_T0072201.1 MGP_C57BL6NJ_G0029985.1 mouse_genomes_project 5 54877402 54885003 + protein_coding retained_intron MGP_C57BL6NJ_T0008345.1 MGP_C57BL6NJ_G0006799.1 mouse_genomes_project 5 76979356 76986853 + Gm43801 lincRNA lincRNA MGP_C57BL6NJ_T0015470.1 MGP_C57BL6NJ_G0013515.1 mouse_genomes_project 5 103574084 103574682 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071147.1 MGP_C57BL6NJ_G0029819.1 mouse_genomes_project 5 30034964 30136314 - MGP_C57BL6NJ_P0071147 Otof protein_coding protein_coding MGP_C57BL6NJ_T0071148.1 MGP_C57BL6NJ_G0029819.1 mouse_genomes_project 5 30034964 30136284 - MGP_C57BL6NJ_P0071148 Otof protein_coding protein_coding MGP_C57BL6NJ_T0071149.1 MGP_C57BL6NJ_G0029819.1 mouse_genomes_project 5 30034970 30136314 - Otof protein_coding retained_intron MGP_C57BL6NJ_T0071150.1 MGP_C57BL6NJ_G0029819.1 mouse_genomes_project 5 30035197 30136241 - Otof protein_coding retained_intron MGP_C57BL6NJ_T0071151.1 MGP_C57BL6NJ_G0029819.1 mouse_genomes_project 5 30076489 30079642 - Otof protein_coding retained_intron MGP_C57BL6NJ_T0001709.1 MGP_C57BL6NJ_G0001604.1 mouse_genomes_project 5 50002561 50005012 - TEC TEC MGP_C57BL6NJ_T0012115.1 MGP_C57BL6NJ_G0010164.1 mouse_genomes_project 5 128885952 128887903 + Oas1b polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012116.1 MGP_C57BL6NJ_G0010164.1 mouse_genomes_project 5 128885955 128911660 + MGP_C57BL6NJ_P0012116 Oas1b polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0074416.1 MGP_C57BL6NJ_G0010164.1 mouse_genomes_project 5 128886018 128908807 + MGP_C57BL6NJ_P0074416 Oas1b polymorphic_pseudogene unknown_likely_coding MGP_C57BL6NJ_T0074417.1 MGP_C57BL6NJ_G0010164.1 mouse_genomes_project 5 128886174 128908807 + MGP_C57BL6NJ_P0074417 Oas1b polymorphic_pseudogene unknown_likely_coding MGP_C57BL6NJ_T0073620.1 MGP_C57BL6NJ_G0030286.1 mouse_genomes_project 5 115054268 115063649 - MGP_C57BL6NJ_P0073620 Mfsd7a protein_coding protein_coding MGP_C57BL6NJ_T0100467.1 MGP_C57BL6NJ_G0038513.1 mouse_genomes_project 5 97966581 97966689 - Gm25521 snRNA snRNA MGP_C57BL6NJ_T0001784.1 MGP_C57BL6NJ_G0001678.1 mouse_genomes_project 5 68356660 68358216 + TEC TEC MGP_C57BL6NJ_T0010985.1 MGP_C57BL6NJ_G0009070.1 mouse_genomes_project 5 148838184 148838267 + Gm24082 miRNA miRNA MGP_C57BL6NJ_T0004884.1 MGP_C57BL6NJ_G0004220.1 mouse_genomes_project 5 80413878 80421653 + Hopxos antisense antisense MGP_C57BL6NJ_T0070569.1 MGP_C57BL6NJ_G0029709.1 mouse_genomes_project 5 4707200 4707573 + 4921511H03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0070570.1 MGP_C57BL6NJ_G0029709.1 mouse_genomes_project 5 4707206 4715669 + MGP_C57BL6NJ_P0070570 4921511H03Rik protein_coding protein_coding MGP_C57BL6NJ_T0070571.1 MGP_C57BL6NJ_G0029709.1 mouse_genomes_project 5 4707213 4710655 + MGP_C57BL6NJ_P0070571 4921511H03Rik protein_coding protein_coding MGP_C57BL6NJ_T0070572.1 MGP_C57BL6NJ_G0029709.1 mouse_genomes_project 5 4707227 4708891 + MGP_C57BL6NJ_P0070572 4921511H03Rik protein_coding protein_coding MGP_C57BL6NJ_T0076028.1 MGP_C57BL6NJ_G0030733.1 mouse_genomes_project 5 151103591 151112427 + MGP_C57BL6NJ_P0076028 Lfng protein_coding protein_coding MGP_C57BL6NJ_T0076029.1 MGP_C57BL6NJ_G0030733.1 mouse_genomes_project 5 151108390 151110214 + Lfng protein_coding processed_transcript MGP_C57BL6NJ_T0076030.1 MGP_C57BL6NJ_G0030733.1 mouse_genomes_project 5 151108566 151111556 + Lfng protein_coding retained_intron MGP_C57BL6NJ_T0008437.1 MGP_C57BL6NJ_G0006871.1 mouse_genomes_project 5 112966743 113044794 - Gm28050 lincRNA lincRNA MGP_C57BL6NJ_T0008438.1 MGP_C57BL6NJ_G0006871.1 mouse_genomes_project 5 113027816 113044797 - Gm28050 lincRNA lincRNA MGP_C57BL6NJ_T0001599.1 MGP_C57BL6NJ_G0001498.1 mouse_genomes_project 5 14721207 14723859 + TEC TEC MGP_C57BL6NJ_T0001774.1 MGP_C57BL6NJ_G0001668.1 mouse_genomes_project 5 67967651 67970474 + TEC TEC MGP_C57BL6NJ_T0011876.1 MGP_C57BL6NJ_G0009961.1 mouse_genomes_project 5 143803978 143804266 + Gm24139 misc_RNA misc_RNA MGP_C57BL6NJ_T0015496.1 MGP_C57BL6NJ_G0013541.1 mouse_genomes_project 5 113216090 113216738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072743.1 MGP_C57BL6NJ_G0030080.1 mouse_genomes_project 5 80208929 80248598 - MGP_C57BL6NJ_P0072743 Ppat protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072744.1 MGP_C57BL6NJ_G0030080.1 mouse_genomes_project 5 80208956 80248604 - MGP_C57BL6NJ_P0072744 Ppat protein_coding protein_coding MGP_C57BL6NJ_T0072745.1 MGP_C57BL6NJ_G0030080.1 mouse_genomes_project 5 80210724 80248191 - Ppat protein_coding retained_intron MGP_C57BL6NJ_T0099122.1 MGP_C57BL6NJ_G0037186.1 mouse_genomes_project 5 127167711 127167828 + n-R5s175 rRNA rRNA MGP_C57BL6NJ_T0001926.1 MGP_C57BL6NJ_G0001819.1 mouse_genomes_project 5 126415108 126417525 + TEC TEC MGP_C57BL6NJ_T0015241.1 MGP_C57BL6NJ_G0013286.1 mouse_genomes_project 5 5370931 5371223 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008528.1 MGP_C57BL6NJ_G0006930.1 mouse_genomes_project 5 127906863 127911001 + Gm43277 lincRNA lincRNA MGP_C57BL6NJ_T0076350.1 MGP_C57BL6NJ_G0030805.1 mouse_genomes_project 5 157282607 157323168 - MGP_C57BL6NJ_P0076350 protein_coding protein_coding MGP_C57BL6NJ_T0015400.1 MGP_C57BL6NJ_G0013445.1 mouse_genomes_project 5 68634785 68638200 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071050.1 MGP_C57BL6NJ_G0029800.1 mouse_genomes_project 5 27715139 27760435 - MGP_C57BL6NJ_P0071050 protein_coding protein_coding MGP_C57BL6NJ_T0071051.1 MGP_C57BL6NJ_G0029800.1 mouse_genomes_project 5 27716769 27726054 - MGP_C57BL6NJ_P0071051 protein_coding protein_coding MGP_C57BL6NJ_T0071052.1 MGP_C57BL6NJ_G0029800.1 mouse_genomes_project 5 27719780 27752512 - MGP_C57BL6NJ_P0071052 protein_coding protein_coding MGP_C57BL6NJ_T0071053.1 MGP_C57BL6NJ_G0029800.1 mouse_genomes_project 5 27720088 27726200 - MGP_C57BL6NJ_P0071053 protein_coding protein_coding MGP_C57BL6NJ_T0071054.1 MGP_C57BL6NJ_G0029800.1 mouse_genomes_project 5 27725276 27726395 - MGP_C57BL6NJ_P0071054 protein_coding protein_coding MGP_C57BL6NJ_T0072274.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67433209 67470133 + MGP_C57BL6NJ_P0072274 Klhl5 protein_coding protein_coding MGP_C57BL6NJ_T0072275.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67433285 67435716 + Klhl5 protein_coding retained_intron MGP_C57BL6NJ_T0072276.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67433530 67469018 + MGP_C57BL6NJ_P0072276 Klhl5 protein_coding protein_coding MGP_C57BL6NJ_T0072277.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67433536 67436666 + Klhl5 protein_coding processed_transcript MGP_C57BL6NJ_T0072278.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67433804 67455674 + Klhl5 protein_coding processed_transcript MGP_C57BL6NJ_T0072279.1 MGP_C57BL6NJ_G0030003.1 mouse_genomes_project 5 67458089 67470133 + MGP_C57BL6NJ_P0072279 Klhl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0004882.1 MGP_C57BL6NJ_G0004219.1 mouse_genomes_project 5 80224062 80224540 + 2310040G07Rik antisense antisense MGP_C57BL6NJ_T0004883.1 MGP_C57BL6NJ_G0004219.1 mouse_genomes_project 5 80224302 80244784 + 2310040G07Rik antisense antisense MGP_C57BL6NJ_T0071024.1 MGP_C57BL6NJ_G0029793.1 mouse_genomes_project 5 25045622 25061700 - MGP_C57BL6NJ_P0071024 Xrcc2 protein_coding protein_coding MGP_C57BL6NJ_T0071025.1 MGP_C57BL6NJ_G0029793.1 mouse_genomes_project 5 25047861 25049249 - Xrcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0071026.1 MGP_C57BL6NJ_G0029793.1 mouse_genomes_project 5 25051741 25061648 - MGP_C57BL6NJ_P0071026 Xrcc2 protein_coding protein_coding MGP_C57BL6NJ_T0071027.1 MGP_C57BL6NJ_G0029793.1 mouse_genomes_project 5 25052499 25061639 - Xrcc2 protein_coding retained_intron MGP_C57BL6NJ_T0001696.1 MGP_C57BL6NJ_G0001592.1 mouse_genomes_project 5 49625318 49629120 - TEC TEC MGP_C57BL6NJ_T0001686.1 MGP_C57BL6NJ_G0001582.1 mouse_genomes_project 5 46660522 46661645 + TEC TEC MGP_C57BL6NJ_T0100484.1 MGP_C57BL6NJ_G0038530.1 mouse_genomes_project 5 125711614 125711721 - Gm25343 snRNA snRNA MGP_C57BL6NJ_T0015387.1 MGP_C57BL6NJ_G0013432.1 mouse_genomes_project 5 63323743 63324581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076560.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171016 162181270 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076561.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171016 162223707 + MGP_C57BL6NJ_P0076561 Brca2 protein_coding protein_coding MGP_C57BL6NJ_T0076562.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171018 162188427 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076563.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171018 162191199 + MGP_C57BL6NJ_P0076563 Brca2 protein_coding protein_coding MGP_C57BL6NJ_T0076564.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171030 162223708 + MGP_C57BL6NJ_P0076564 Brca2 protein_coding protein_coding MGP_C57BL6NJ_T0076565.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162171076 162175103 + Brca2 protein_coding processed_transcript MGP_C57BL6NJ_T0076566.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162180606 162183832 + Brca2 protein_coding processed_transcript MGP_C57BL6NJ_T0076567.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162205284 162207519 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076568.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162206794 162210940 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076569.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162211010 162214125 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076570.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162220500 162223707 + Brca2 protein_coding processed_transcript MGP_C57BL6NJ_T0076571.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162220781 162223293 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0076572.1 MGP_C57BL6NJ_G0030847.1 mouse_genomes_project 5 162222547 162224290 + Brca2 protein_coding retained_intron MGP_C57BL6NJ_T0099121.1 MGP_C57BL6NJ_G0037185.1 mouse_genomes_project 5 124831545 124831666 + n-R5s174 rRNA rRNA MGP_C57BL6NJ_T0001915.1 MGP_C57BL6NJ_G0001808.1 mouse_genomes_project 5 123362266 123364557 + TEC TEC MGP_C57BL6NJ_T0070506.1 MGP_C57BL6NJ_G0029700.1 mouse_genomes_project 5 1976096 1980293 - MGP_C57BL6NJ_P0070506 Fzd1 protein_coding protein_coding MGP_C57BL6NJ_T0001924.1 MGP_C57BL6NJ_G0001817.1 mouse_genomes_project 5 125762979 125763901 - TEC TEC MGP_C57BL6NJ_T0101752.1 MGP_C57BL6NJ_G0039798.1 mouse_genomes_project 5 98030067 98030203 + Gm22915 snoRNA snoRNA MGP_C57BL6NJ_T0076349.1 MGP_C57BL6NJ_G0030804.1 mouse_genomes_project 5 157282607 157323168 - MGP_C57BL6NJ_P0076349 4930449I24Rik protein_coding protein_coding MGP_C57BL6NJ_T0008663.1 MGP_C57BL6NJ_G0007021.1 mouse_genomes_project 5 162494093 162541079 + Gm43299 lincRNA lincRNA MGP_C57BL6NJ_T0074453.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129641791 129686680 + MGP_C57BL6NJ_P0074453 Naa25 protein_coding protein_coding MGP_C57BL6NJ_T0074454.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129641849 129683091 + MGP_C57BL6NJ_P0074454 Naa25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074455.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129641850 129670789 + Naa25 protein_coding retained_intron MGP_C57BL6NJ_T0074456.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129641860 129684202 + MGP_C57BL6NJ_P0074456 Naa25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074458.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129683688 129688649 + MGP_C57BL6NJ_P0074458 Naa25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074459.1 MGP_C57BL6NJ_G0030455.1 mouse_genomes_project 5 129684273 129684787 + Naa25 protein_coding processed_transcript MGP_C57BL6NJ_T0015227.1 MGP_C57BL6NJ_G0013272.1 mouse_genomes_project 5 9447 9721 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070958.1 MGP_C57BL6NJ_G0029777.1 mouse_genomes_project 5 23732499 23763596 - MGP_C57BL6NJ_P0070958 Gbx1 protein_coding protein_coding MGP_C57BL6NJ_T0010936.1 MGP_C57BL6NJ_G0009021.1 mouse_genomes_project 5 70194934 70195029 - Gm23617 miRNA miRNA MGP_C57BL6NJ_T0075782.1 MGP_C57BL6NJ_G0030679.1 mouse_genomes_project 5 147994395 148025909 - MGP_C57BL6NJ_P0075782 Cyp3a13 protein_coding protein_coding MGP_C57BL6NJ_T0001650.1 MGP_C57BL6NJ_G0001546.1 mouse_genomes_project 5 36871243 36873798 + TEC TEC MGP_C57BL6NJ_T0015341.1 MGP_C57BL6NJ_G0013386.1 mouse_genomes_project 5 39823627 39824526 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015520.1 MGP_C57BL6NJ_G0013565.1 mouse_genomes_project 5 117816022 117816693 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001848.1 MGP_C57BL6NJ_G0001741.1 mouse_genomes_project 5 95569542 95572674 + TEC TEC MGP_C57BL6NJ_T0008378.1 MGP_C57BL6NJ_G0006826.1 mouse_genomes_project 5 95585421 95589045 + Gm43086 lincRNA lincRNA MGP_C57BL6NJ_T0005020.1 MGP_C57BL6NJ_G0004313.1 mouse_genomes_project 5 145665397 145668918 - antisense antisense MGP_C57BL6NJ_T0074457.1 MGP_C57BL6NJ_G0030456.1 mouse_genomes_project 5 129672860 129696758 - MGP_C57BL6NJ_P0074457 Erp29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074460.1 MGP_C57BL6NJ_G0030456.1 mouse_genomes_project 5 129685094 129696777 - MGP_C57BL6NJ_P0074460 Erp29 protein_coding protein_coding MGP_C57BL6NJ_T0074461.1 MGP_C57BL6NJ_G0030456.1 mouse_genomes_project 5 129689026 129696767 - MGP_C57BL6NJ_P0074461 Erp29 protein_coding protein_coding MGP_C57BL6NJ_T0074462.1 MGP_C57BL6NJ_G0030456.1 mouse_genomes_project 5 129689511 129696619 - MGP_C57BL6NJ_P0074462 Erp29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099493.1 MGP_C57BL6NJ_G0037546.1 mouse_genomes_project 5 162421196 162422977 + Gm43807 sense_intronic sense_intronic MGP_C57BL6NJ_T0075250.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839074 143921864 - MGP_C57BL6NJ_P0075250 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075251.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839077 143921850 - MGP_C57BL6NJ_P0075251 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075252.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839077 143921850 - MGP_C57BL6NJ_P0075252 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075253.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839079 143921824 - MGP_C57BL6NJ_P0075253 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075254.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839082 143921786 - MGP_C57BL6NJ_P0075254 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075255.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839083 143881691 - Gtf2i protein_coding processed_transcript MGP_C57BL6NJ_T0075256.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839083 143921797 - MGP_C57BL6NJ_P0075256 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075257.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839083 143921797 - MGP_C57BL6NJ_P0075257 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075258.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839083 143921797 - MGP_C57BL6NJ_P0075258 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075259.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839083 143921797 - MGP_C57BL6NJ_P0075259 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075260.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143839737 143844803 - MGP_C57BL6NJ_P0075260 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075261.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143840083 143843652 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075262.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143840753 143898628 - MGP_C57BL6NJ_P0075262 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075263.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143840895 143842286 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075264.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143841877 143845993 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075265.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143843992 143844985 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075266.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143857048 143874464 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075267.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143857074 143898578 - MGP_C57BL6NJ_P0075267 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075268.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143859261 143860590 - Gtf2i protein_coding processed_transcript MGP_C57BL6NJ_T0075269.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143860355 143866897 - Gtf2i protein_coding processed_transcript MGP_C57BL6NJ_T0075270.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143864813 143876870 - Gtf2i protein_coding processed_transcript MGP_C57BL6NJ_T0075271.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143888679 143921479 - MGP_C57BL6NJ_P0075271 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075272.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143888710 143919117 - MGP_C57BL6NJ_P0075272 Gtf2i protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075273.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143888710 143918825 - MGP_C57BL6NJ_P0075273 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075274.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143888736 143921780 - MGP_C57BL6NJ_P0075274 Gtf2i protein_coding protein_coding MGP_C57BL6NJ_T0075275.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143888790 143921831 - MGP_C57BL6NJ_P0075275 Gtf2i protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075276.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143890996 143913707 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0075277.1 MGP_C57BL6NJ_G0030586.1 mouse_genomes_project 5 143898030 143900194 - Gtf2i protein_coding retained_intron MGP_C57BL6NJ_T0001983.1 MGP_C57BL6NJ_G0001875.1 mouse_genomes_project 5 139951261 139951689 - TEC TEC MGP_C57BL6NJ_T0015482.1 MGP_C57BL6NJ_G0013527.1 mouse_genomes_project 5 108290855 108291599 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008640.1 MGP_C57BL6NJ_G0007007.1 mouse_genomes_project 5 160635518 160636892 + Gm42787 lincRNA lincRNA MGP_C57BL6NJ_T0100502.1 MGP_C57BL6NJ_G0038548.1 mouse_genomes_project 5 162204625 162204726 - Gm23641 snRNA snRNA MGP_C57BL6NJ_T0010920.1 MGP_C57BL6NJ_G0009005.1 mouse_genomes_project 5 31515889 31515999 - Mir3473e miRNA miRNA MGP_C57BL6NJ_T0001645.1 MGP_C57BL6NJ_G0001541.1 mouse_genomes_project 5 34708560 34709029 + TEC TEC MGP_C57BL6NJ_T0076175.1 MGP_C57BL6NJ_G0030764.1 mouse_genomes_project 5 154276914 154304393 - MGP_C57BL6NJ_P0076175 Rac1 protein_coding protein_coding MGP_C57BL6NJ_T0076176.1 MGP_C57BL6NJ_G0030764.1 mouse_genomes_project 5 154281819 154292938 - Rac1 protein_coding processed_transcript MGP_C57BL6NJ_T0076177.1 MGP_C57BL6NJ_G0030764.1 mouse_genomes_project 5 154289428 154292364 - Rac1 protein_coding processed_transcript MGP_C57BL6NJ_T0070803.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20738149 20768628 - MGP_C57BL6NJ_P0070803 Dnajc2 protein_coding protein_coding MGP_C57BL6NJ_T0070804.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20738151 20768496 - MGP_C57BL6NJ_P0070804 Dnajc2 protein_coding protein_coding MGP_C57BL6NJ_T0070805.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20738158 20768614 - Dnajc2 protein_coding retained_intron MGP_C57BL6NJ_T0070806.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20747267 20751402 - Dnajc2 protein_coding retained_intron MGP_C57BL6NJ_T0070807.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20757467 20768598 - Dnajc2 protein_coding retained_intron MGP_C57BL6NJ_T0070808.1 MGP_C57BL6NJ_G0029753.1 mouse_genomes_project 5 20758452 20768629 - MGP_C57BL6NJ_P0070808 Dnajc2 protein_coding protein_coding MGP_C57BL6NJ_T0071940.1 MGP_C57BL6NJ_G0029942.1 mouse_genomes_project 5 38670884 38674036 + MGP_C57BL6NJ_P0071940 Drd5 protein_coding protein_coding MGP_C57BL6NJ_T0015588.1 MGP_C57BL6NJ_G0013633.1 mouse_genomes_project 5 154904113 154905070 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015315.1 MGP_C57BL6NJ_G0013360.1 mouse_genomes_project 5 29944750 29945117 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015450.1 MGP_C57BL6NJ_G0013495.1 mouse_genomes_project 5 93060553 93061099 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001936.1 MGP_C57BL6NJ_G0001829.1 mouse_genomes_project 5 129137101 129139406 - TEC TEC MGP_C57BL6NJ_T0015566.1 MGP_C57BL6NJ_G0013611.1 mouse_genomes_project 5 147975398 147975786 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010971.1 MGP_C57BL6NJ_G0009056.1 mouse_genomes_project 5 144078635 144078734 + Gm26340 miRNA miRNA MGP_C57BL6NJ_T0015615.1 MGP_C57BL6NJ_G0013660.1 mouse_genomes_project 5 161596979 161598981 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001655.1 MGP_C57BL6NJ_G0001551.1 mouse_genomes_project 5 39869460 39871034 - TEC TEC MGP_C57BL6NJ_T0070623.1 MGP_C57BL6NJ_G0029716.1 mouse_genomes_project 5 6152487 6247549 + MGP_C57BL6NJ_P0070623 Abcb1a protein_coding protein_coding MGP_C57BL6NJ_T0070624.1 MGP_C57BL6NJ_G0029716.1 mouse_genomes_project 5 6216425 6247544 + Abcb1a protein_coding retained_intron MGP_C57BL6NJ_T0070625.1 MGP_C57BL6NJ_G0029716.1 mouse_genomes_project 5 6216455 6219781 + Abcb1a protein_coding processed_transcript MGP_C57BL6NJ_T0070626.1 MGP_C57BL6NJ_G0029716.1 mouse_genomes_project 5 6230193 6234500 + Abcb1a protein_coding retained_intron MGP_C57BL6NJ_T0099484.1 MGP_C57BL6NJ_G0037540.1 mouse_genomes_project 5 153568648 153572945 - D430018E03Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0072118.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306887 49672670 - Kcnip4 protein_coding processed_transcript MGP_C57BL6NJ_T0072119.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306887 49510415 - MGP_C57BL6NJ_P0072119 Kcnip4 protein_coding protein_coding MGP_C57BL6NJ_T0072120.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306887 50478270 - MGP_C57BL6NJ_P0072120 Kcnip4 protein_coding protein_coding MGP_C57BL6NJ_T0072121.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306887 49813562 - MGP_C57BL6NJ_P0072121 Kcnip4 protein_coding protein_coding MGP_C57BL6NJ_T0072122.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306888 49405795 - Kcnip4 protein_coding processed_transcript MGP_C57BL6NJ_T0072123.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306892 50478127 - MGP_C57BL6NJ_P0072123 Kcnip4 protein_coding protein_coding MGP_C57BL6NJ_T0072124.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49306897 50227953 - MGP_C57BL6NJ_P0072124 Kcnip4 protein_coding protein_coding MGP_C57BL6NJ_T0072127.1 MGP_C57BL6NJ_G0029971.1 mouse_genomes_project 5 49313419 49672664 - Kcnip4 protein_coding processed_transcript MGP_C57BL6NJ_T0102263.1 MGP_C57BL6NJ_G0040250.1 mouse_genomes_project 5 46575202 46576079 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001854.1 MGP_C57BL6NJ_G0001747.1 mouse_genomes_project 5 98138723 98140813 + TEC TEC MGP_C57BL6NJ_T0075885.1 MGP_C57BL6NJ_G0030702.1 mouse_genomes_project 5 148854137 148873670 + MGP_C57BL6NJ_P0075885 A430033K04Rik protein_coding protein_coding MGP_C57BL6NJ_T0075886.1 MGP_C57BL6NJ_G0030702.1 mouse_genomes_project 5 148854154 148914957 + MGP_C57BL6NJ_P0075886 A430033K04Rik protein_coding protein_coding MGP_C57BL6NJ_T0075887.1 MGP_C57BL6NJ_G0030702.1 mouse_genomes_project 5 148854172 148881605 + MGP_C57BL6NJ_P0075887 A430033K04Rik protein_coding protein_coding MGP_C57BL6NJ_T0076452.1 MGP_C57BL6NJ_G0030830.1 mouse_genomes_project 5 159207964 159235624 - MGP_C57BL6NJ_P0076452 Slc46a3 protein_coding protein_coding MGP_C57BL6NJ_T0076453.1 MGP_C57BL6NJ_G0030830.1 mouse_genomes_project 5 159207968 159235624 - MGP_C57BL6NJ_P0076453 Slc46a3 protein_coding protein_coding MGP_C57BL6NJ_T0076454.1 MGP_C57BL6NJ_G0030830.1 mouse_genomes_project 5 159208086 159209397 - Slc46a3 protein_coding retained_intron MGP_C57BL6NJ_T0076455.1 MGP_C57BL6NJ_G0030830.1 mouse_genomes_project 5 159234689 159235624 - MGP_C57BL6NJ_P0076455 Slc46a3 protein_coding protein_coding MGP_C57BL6NJ_T0071397.1 MGP_C57BL6NJ_G0029856.1 mouse_genomes_project 5 31335350 31338087 + 4930548H24Rik protein_coding retained_intron MGP_C57BL6NJ_T0071398.1 MGP_C57BL6NJ_G0029856.1 mouse_genomes_project 5 31335469 31338087 + MGP_C57BL6NJ_P0071398 4930548H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0001952.1 MGP_C57BL6NJ_G0001845.1 mouse_genomes_project 5 131601347 131604093 + TEC TEC MGP_C57BL6NJ_T0004995.1 MGP_C57BL6NJ_G0004294.1 mouse_genomes_project 5 132997404 132998116 + Gm42425 antisense antisense MGP_C57BL6NJ_T0004841.1 MGP_C57BL6NJ_G0004186.1 mouse_genomes_project 5 44213976 44221816 - Gm15866 antisense antisense MGP_C57BL6NJ_T0004842.1 MGP_C57BL6NJ_G0004186.1 mouse_genomes_project 5 44221331 44266008 - Gm15866 antisense antisense MGP_C57BL6NJ_T0008244.1 MGP_C57BL6NJ_G0006726.1 mouse_genomes_project 5 24824962 24827437 + 4831440E17Rik lincRNA lincRNA MGP_C57BL6NJ_T0099465.1 MGP_C57BL6NJ_G0037522.1 mouse_genomes_project 5 34314555 34318413 - sense_intronic sense_intronic MGP_C57BL6NJ_T0015229.1 MGP_C57BL6NJ_G0013274.1 mouse_genomes_project 5 488283 488464 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103216.1 MGP_C57BL6NJ_G0041010.1 mouse_genomes_project 5 146977966 146979875 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101754.1 MGP_C57BL6NJ_G0039800.1 mouse_genomes_project 5 105313979 105314111 + Gm25969 snoRNA snoRNA MGP_C57BL6NJ_T0074741.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131861834 131963711 + MGP_C57BL6NJ_P0074741 Wdr66 protein_coding protein_coding MGP_C57BL6NJ_T0074742.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131864755 131964401 + MGP_C57BL6NJ_P0074742 Wdr66 protein_coding protein_coding MGP_C57BL6NJ_T0074743.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131899658 131926866 + Wdr66 protein_coding retained_intron MGP_C57BL6NJ_T0074744.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131899658 131922907 + MGP_C57BL6NJ_P0074744 Wdr66 protein_coding protein_coding MGP_C57BL6NJ_T0074745.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131901527 131926817 + Wdr66 protein_coding retained_intron MGP_C57BL6NJ_T0074746.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131906184 131907642 + Wdr66 protein_coding retained_intron MGP_C57BL6NJ_T0074747.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131919101 131963711 + MGP_C57BL6NJ_P0074747 Wdr66 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074748.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131922993 131963547 + MGP_C57BL6NJ_P0074748 Wdr66 protein_coding protein_coding MGP_C57BL6NJ_T0074749.1 MGP_C57BL6NJ_G0030497.1 mouse_genomes_project 5 131933176 131963566 + Wdr66 protein_coding retained_intron MGP_C57BL6NJ_T0008399.1 MGP_C57BL6NJ_G0006844.1 mouse_genomes_project 5 104643609 104779994 - Gm43251 lincRNA lincRNA MGP_C57BL6NJ_T0100446.1 MGP_C57BL6NJ_G0038492.1 mouse_genomes_project 5 68014860 68014934 + Gm24399 snRNA snRNA MGP_C57BL6NJ_T0008217.1 MGP_C57BL6NJ_G0006710.1 mouse_genomes_project 5 6843959 6845760 - Gm15734 lincRNA lincRNA MGP_C57BL6NJ_T0008595.1 MGP_C57BL6NJ_G0006968.1 mouse_genomes_project 5 147158773 147173791 - Gm3054 lincRNA lincRNA MGP_C57BL6NJ_T0018616.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 66960441 67072635 - Gm20033 processed_transcript antisense MGP_C57BL6NJ_T0018617.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 66960445 66961074 - Gm20033 processed_transcript retained_intron MGP_C57BL6NJ_T0018618.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 66960559 66966676 - Gm20033 processed_transcript retained_intron MGP_C57BL6NJ_T0018619.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 66961892 66979979 - Gm20033 processed_transcript processed_transcript MGP_C57BL6NJ_T0018620.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 67069020 67072354 - Gm20033 processed_transcript retained_intron MGP_C57BL6NJ_T0018621.1 MGP_C57BL6NJ_G0015993.1 mouse_genomes_project 5 67069116 67072634 - Gm20033 processed_transcript antisense MGP_C57BL6NJ_T0075170.1 MGP_C57BL6NJ_G0030571.1 mouse_genomes_project 5 139332313 139396226 + MGP_C57BL6NJ_P0075170 Tpst1 protein_coding protein_coding MGP_C57BL6NJ_T0075171.1 MGP_C57BL6NJ_G0030571.1 mouse_genomes_project 5 139338357 139396226 + MGP_C57BL6NJ_P0075171 Tpst1 protein_coding protein_coding MGP_C57BL6NJ_T0075172.1 MGP_C57BL6NJ_G0030571.1 mouse_genomes_project 5 139352582 139361022 + MGP_C57BL6NJ_P0075172 Tpst1 protein_coding protein_coding MGP_C57BL6NJ_T0075173.1 MGP_C57BL6NJ_G0030571.1 mouse_genomes_project 5 139394453 139396209 + Tpst1 protein_coding retained_intron MGP_C57BL6NJ_T0001641.1 MGP_C57BL6NJ_G0001537.1 mouse_genomes_project 5 33726989 33728144 + TEC TEC MGP_C57BL6NJ_T0103190.1 MGP_C57BL6NJ_G0040984.1 mouse_genomes_project 5 14380491 14381524 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018592.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689322 30692659 + Abhd1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018593.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689322 30694348 + Abhd1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018594.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689345 30694346 + Abhd1 processed_transcript retained_intron MGP_C57BL6NJ_T0018595.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689345 30692969 + Abhd1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018596.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689348 30693956 + Abhd1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018597.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30689362 30694346 + Abhd1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018598.1 MGP_C57BL6NJ_G0015985.1 mouse_genomes_project 5 30692629 30693441 + Abhd1 processed_transcript retained_intron MGP_C57BL6NJ_T0008409.1 MGP_C57BL6NJ_G0006852.1 mouse_genomes_project 5 106134532 106144457 - 5430416N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0008410.1 MGP_C57BL6NJ_G0006852.1 mouse_genomes_project 5 106137342 106144438 - 5430416N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0008411.1 MGP_C57BL6NJ_G0006852.1 mouse_genomes_project 5 106143657 106144297 - 5430416N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0008412.1 MGP_C57BL6NJ_G0006852.1 mouse_genomes_project 5 106143915 106144437 - 5430416N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0072847.1 MGP_C57BL6NJ_G0030098.1 mouse_genomes_project 5 90653180 90721194 - MGP_C57BL6NJ_P0072847 Tmprss11c protein_coding protein_coding MGP_C57BL6NJ_T0072848.1 MGP_C57BL6NJ_G0030098.1 mouse_genomes_project 5 90653451 90721146 - MGP_C57BL6NJ_P0072848 Tmprss11c protein_coding protein_coding MGP_C57BL6NJ_T0075310.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144222548 144237589 + Rfc2 protein_coding processed_transcript MGP_C57BL6NJ_T0075311.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144225511 144251886 + MGP_C57BL6NJ_P0075311 Rfc2 protein_coding protein_coding MGP_C57BL6NJ_T0075312.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144225578 144238026 + Rfc2 protein_coding retained_intron MGP_C57BL6NJ_T0075313.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144237911 144244347 + MGP_C57BL6NJ_P0075313 Rfc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075314.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144239096 144241704 + Rfc2 protein_coding retained_intron MGP_C57BL6NJ_T0075315.1 MGP_C57BL6NJ_G0030590.1 mouse_genomes_project 5 144240510 144244720 + Rfc2 protein_coding retained_intron MGP_C57BL6NJ_T0072892.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255491 92263924 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072893.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255491 92256761 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072894.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255491 92256819 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072895.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255510 92263533 + MGP_C57BL6NJ_P0072895 Csn1s1 protein_coding protein_coding MGP_C57BL6NJ_T0072896.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255511 92274510 + MGP_C57BL6NJ_P0072896 Csn1s1 protein_coding protein_coding MGP_C57BL6NJ_T0072897.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92255516 92274510 + MGP_C57BL6NJ_P0072897 Csn1s1 protein_coding protein_coding MGP_C57BL6NJ_T0072898.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92256130 92264389 + Csn1s1 protein_coding processed_transcript MGP_C57BL6NJ_T0072899.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92256516 92259046 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072900.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92260822 92261748 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072901.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92269085 92271319 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072902.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92270997 92274456 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0072903.1 MGP_C57BL6NJ_G0030120.1 mouse_genomes_project 5 92272460 92273990 + Csn1s1 protein_coding retained_intron MGP_C57BL6NJ_T0070714.1 MGP_C57BL6NJ_G0029733.1 mouse_genomes_project 5 16151331 16157531 + MGP_C57BL6NJ_P0070714 protein_coding protein_coding MGP_C57BL6NJ_T0001660.1 MGP_C57BL6NJ_G0001556.1 mouse_genomes_project 5 43922099 43923311 + TEC TEC MGP_C57BL6NJ_T0001749.1 MGP_C57BL6NJ_G0001644.1 mouse_genomes_project 5 59560486 59562353 + TEC TEC MGP_C57BL6NJ_T0073878.1 MGP_C57BL6NJ_G0030340.1 mouse_genomes_project 5 119783107 119992666 - MGP_C57BL6NJ_P0073878 Myo18b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073879.1 MGP_C57BL6NJ_G0030340.1 mouse_genomes_project 5 119783114 120009507 - MGP_C57BL6NJ_P0073879 Myo18b protein_coding protein_coding MGP_C57BL6NJ_T0073880.1 MGP_C57BL6NJ_G0030340.1 mouse_genomes_project 5 119783116 119866234 - Myo18b protein_coding processed_transcript MGP_C57BL6NJ_T0073881.1 MGP_C57BL6NJ_G0030340.1 mouse_genomes_project 5 119872702 119984880 - Myo18b protein_coding processed_transcript MGP_C57BL6NJ_T0073882.1 MGP_C57BL6NJ_G0030340.1 mouse_genomes_project 5 119923111 119985790 - MGP_C57BL6NJ_P0073882 Myo18b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072249.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66373673 66390915 + MGP_C57BL6NJ_P0072249 Tbc1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072250.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66376893 66582941 + MGP_C57BL6NJ_P0072250 Tbc1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072251.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66377262 66582941 + MGP_C57BL6NJ_P0072251 Tbc1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072252.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66377653 66391656 + Tbc1d1 protein_coding retained_intron MGP_C57BL6NJ_T0072253.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66377653 66582941 + MGP_C57BL6NJ_P0072253 Tbc1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072254.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66455748 66582941 + MGP_C57BL6NJ_P0072254 Tbc1d1 protein_coding protein_coding MGP_C57BL6NJ_T0072255.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66507031 66516351 + MGP_C57BL6NJ_P0072255 Tbc1d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072256.1 MGP_C57BL6NJ_G0029997.1 mouse_genomes_project 5 66530105 66582936 + Tbc1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0008506.1 MGP_C57BL6NJ_G0006912.1 mouse_genomes_project 5 123936589 123938712 - 4930562A09Rik lincRNA lincRNA MGP_C57BL6NJ_T0015571.1 MGP_C57BL6NJ_G0013616.1 mouse_genomes_project 5 148147439 148154328 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072499.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73792168 73950115 - MGP_C57BL6NJ_P0072499 Gabra2 protein_coding protein_coding MGP_C57BL6NJ_T0072500.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73794052 73950075 - MGP_C57BL6NJ_P0072500 Gabra2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072501.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73795478 73853778 - Gabra2 protein_coding retained_intron MGP_C57BL6NJ_T0072502.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73795584 73948936 - MGP_C57BL6NJ_P0072502 Gabra2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072503.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73808851 73949496 - Gabra2 protein_coding processed_transcript MGP_C57BL6NJ_T0072504.1 MGP_C57BL6NJ_G0030037.1 mouse_genomes_project 5 73946045 73949161 - Gabra2 protein_coding retained_intron MGP_C57BL6NJ_T0075836.1 MGP_C57BL6NJ_G0030690.1 mouse_genomes_project 5 148343670 148344978 + MGP_C57BL6NJ_P0075836 Mblac1 protein_coding protein_coding MGP_C57BL6NJ_T0002025.1 MGP_C57BL6NJ_G0001916.1 mouse_genomes_project 5 147341170 147342119 + TEC TEC MGP_C57BL6NJ_T0008243.1 MGP_C57BL6NJ_G0006725.1 mouse_genomes_project 5 24270854 24284762 + 1500035N22Rik lincRNA lincRNA MGP_C57BL6NJ_T0015594.1 MGP_C57BL6NJ_G0013639.1 mouse_genomes_project 5 156366613 156366806 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076414.1 MGP_C57BL6NJ_G0030824.1 mouse_genomes_project 5 158546664 158553130 - MGP_C57BL6NJ_P0076414 Cdx2 protein_coding protein_coding MGP_C57BL6NJ_T0015573.1 MGP_C57BL6NJ_G0013618.1 mouse_genomes_project 5 148513263 148513467 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008559.1 MGP_C57BL6NJ_G0006946.1 mouse_genomes_project 5 135665088 135698561 + Gm43757 lincRNA lincRNA MGP_C57BL6NJ_T0008560.1 MGP_C57BL6NJ_G0006946.1 mouse_genomes_project 5 135665110 135669999 + Gm43757 lincRNA lincRNA MGP_C57BL6NJ_T0015261.1 MGP_C57BL6NJ_G0013306.1 mouse_genomes_project 5 15646296 15646549 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015501.1 MGP_C57BL6NJ_G0013546.1 mouse_genomes_project 5 114392672 114392958 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072202.1 MGP_C57BL6NJ_G0029986.1 mouse_genomes_project 5 54936340 54945818 - MGP_C57BL6NJ_P0072202 Cckar protein_coding protein_coding MGP_C57BL6NJ_T0072203.1 MGP_C57BL6NJ_G0029986.1 mouse_genomes_project 5 54937049 54946270 - MGP_C57BL6NJ_P0072203 Cckar protein_coding protein_coding MGP_C57BL6NJ_T0072204.1 MGP_C57BL6NJ_G0029986.1 mouse_genomes_project 5 54944909 54946125 - Cckar protein_coding processed_transcript MGP_C57BL6NJ_T0002022.1 MGP_C57BL6NJ_G0001913.1 mouse_genomes_project 5 145398204 145409916 - TEC TEC MGP_C57BL6NJ_T0075356.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723214 144723861 + MGP_C57BL6NJ_P0075356 Abhd11 protein_coding protein_coding MGP_C57BL6NJ_T0075357.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723257 144725972 + MGP_C57BL6NJ_P0075357 Abhd11 protein_coding protein_coding MGP_C57BL6NJ_T0075358.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723492 144725972 + MGP_C57BL6NJ_P0075358 Abhd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075359.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723507 144725972 + MGP_C57BL6NJ_P0075359 Abhd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075360.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723513 144725978 + MGP_C57BL6NJ_P0075360 Abhd11 protein_coding protein_coding MGP_C57BL6NJ_T0075361.1 MGP_C57BL6NJ_G0030600.1 mouse_genomes_project 5 144723774 144725778 + MGP_C57BL6NJ_P0075361 Abhd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015539.1 MGP_C57BL6NJ_G0013584.1 mouse_genomes_project 5 128683153 128683364 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015372.1 MGP_C57BL6NJ_G0013417.1 mouse_genomes_project 5 58742129 58743479 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076543.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161719300 161965324 + MGP_C57BL6NJ_P0076543 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076544.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161719322 161974245 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076545.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161719322 161970793 + MGP_C57BL6NJ_P0076545 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076546.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161799390 161965299 + MGP_C57BL6NJ_P0076546 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076547.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161878695 161881054 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076548.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161880915 162139674 + MGP_C57BL6NJ_P0076548 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076549.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 161917397 162022658 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076550.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162034964 162037635 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076551.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162068813 162072833 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076552.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162079430 162139674 + MGP_C57BL6NJ_P0076552 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076553.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162091984 162139674 + MGP_C57BL6NJ_P0076553 Fry protein_coding protein_coding MGP_C57BL6NJ_T0076554.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162098565 162138724 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076555.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162101500 162105155 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076556.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162128819 162131437 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076557.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162131748 162133626 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0076558.1 MGP_C57BL6NJ_G0030845.1 mouse_genomes_project 5 162137797 162139556 + Fry protein_coding retained_intron MGP_C57BL6NJ_T0004980.1 MGP_C57BL6NJ_G0004285.1 mouse_genomes_project 5 130468450 130476945 + Gm15637 antisense antisense MGP_C57BL6NJ_T0004876.1 MGP_C57BL6NJ_G0004214.1 mouse_genomes_project 5 76153413 76154284 + 1700071G01Rik antisense antisense MGP_C57BL6NJ_T0015455.1 MGP_C57BL6NJ_G0013500.1 mouse_genomes_project 5 94835193 94835640 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100483.1 MGP_C57BL6NJ_G0038529.1 mouse_genomes_project 5 122937309 122937450 + Gm24407 snRNA snRNA MGP_C57BL6NJ_T0008318.1 MGP_C57BL6NJ_G0006779.1 mouse_genomes_project 5 55616911 55625506 + Gm10440 lincRNA lincRNA MGP_C57BL6NJ_T0004811.1 MGP_C57BL6NJ_G0004162.1 mouse_genomes_project 5 26988215 26989540 - Gm16058 antisense antisense MGP_C57BL6NJ_T0001853.1 MGP_C57BL6NJ_G0001746.1 mouse_genomes_project 5 98050666 98051259 - TEC TEC MGP_C57BL6NJ_T0073193.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101450034 101461392 - Cnot6l protein_coding retained_intron MGP_C57BL6NJ_T0073194.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101450047 101541964 - MGP_C57BL6NJ_P0073194 Cnot6l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073195.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101450195 101541964 - MGP_C57BL6NJ_P0073195 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0073196.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101451638 101514763 - MGP_C57BL6NJ_P0073196 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0073197.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101484796 101509977 - Cnot6l protein_coding retained_intron MGP_C57BL6NJ_T0073198.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101485485 101541951 - MGP_C57BL6NJ_P0073198 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0073199.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101509977 101542080 - MGP_C57BL6NJ_P0073199 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0073200.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101510013 101544367 - MGP_C57BL6NJ_P0073200 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0073201.1 MGP_C57BL6NJ_G0030194.1 mouse_genomes_project 5 101510124 101541972 - MGP_C57BL6NJ_P0073201 Cnot6l protein_coding protein_coding MGP_C57BL6NJ_T0015301.1 MGP_C57BL6NJ_G0013346.1 mouse_genomes_project 5 26241882 26242288 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001822.1 MGP_C57BL6NJ_G0001715.1 mouse_genomes_project 5 76186819 76189283 - TEC TEC MGP_C57BL6NJ_T0001872.1 MGP_C57BL6NJ_G0001765.1 mouse_genomes_project 5 107913559 107914596 - TEC TEC MGP_C57BL6NJ_T0001677.1 MGP_C57BL6NJ_G0001573.1 mouse_genomes_project 5 45402339 45404385 - TEC TEC MGP_C57BL6NJ_T0070784.1 MGP_C57BL6NJ_G0029749.1 mouse_genomes_project 5 20504503 20513294 + Lrrc17 protein_coding processed_transcript MGP_C57BL6NJ_T0070785.1 MGP_C57BL6NJ_G0029749.1 mouse_genomes_project 5 20504507 20538354 + MGP_C57BL6NJ_P0070785 Lrrc17 protein_coding protein_coding MGP_C57BL6NJ_T0008518.1 MGP_C57BL6NJ_G0006922.1 mouse_genomes_project 5 127051829 127058755 - Gm7538 lincRNA lincRNA MGP_C57BL6NJ_T0001754.1 MGP_C57BL6NJ_G0001649.1 mouse_genomes_project 5 59758313 59761799 + TEC TEC MGP_C57BL6NJ_T0010965.1 MGP_C57BL6NJ_G0009050.1 mouse_genomes_project 5 131194644 131194763 + Mir8115 miRNA miRNA MGP_C57BL6NJ_T0011865.1 MGP_C57BL6NJ_G0009950.1 mouse_genomes_project 5 109528477 109528770 + Gm23085 misc_RNA misc_RNA MGP_C57BL6NJ_T0073192.1 MGP_C57BL6NJ_G0030193.1 mouse_genomes_project 5 101353348 101357466 + MGP_C57BL6NJ_P0073192 Cxcl13 protein_coding protein_coding MGP_C57BL6NJ_T0072436.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809518 69813480 + MGP_C57BL6NJ_P0072436 Tmem33 protein_coding protein_coding MGP_C57BL6NJ_T0072437.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809563 69837196 + MGP_C57BL6NJ_P0072437 Tmem33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072438.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809564 69841998 + MGP_C57BL6NJ_P0072438 Tmem33 protein_coding protein_coding MGP_C57BL6NJ_T0072439.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809571 69813147 + MGP_C57BL6NJ_P0072439 Tmem33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072440.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809585 69842003 + MGP_C57BL6NJ_P0072440 Tmem33 protein_coding protein_coding MGP_C57BL6NJ_T0072441.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809621 69811941 + Tmem33 protein_coding retained_intron MGP_C57BL6NJ_T0072442.1 MGP_C57BL6NJ_G0030024.1 mouse_genomes_project 5 69809763 69817874 + Tmem33 protein_coding retained_intron MGP_C57BL6NJ_T0010915.1 MGP_C57BL6NJ_G0009000.1 mouse_genomes_project 5 23840211 23840309 + Mir671 miRNA miRNA MGP_C57BL6NJ_T0073240.1 MGP_C57BL6NJ_G0030206.1 mouse_genomes_project 5 104127711 104128761 + MGP_C57BL6NJ_P0073240 Gm11111 protein_coding protein_coding MGP_C57BL6NJ_T0070635.1 MGP_C57BL6NJ_G0029718.1 mouse_genomes_project 5 6420495 6508774 + MGP_C57BL6NJ_P0070635 Abcb4 protein_coding protein_coding MGP_C57BL6NJ_T0070636.1 MGP_C57BL6NJ_G0029718.1 mouse_genomes_project 5 6420499 6428085 + Abcb4 protein_coding retained_intron MGP_C57BL6NJ_T0070637.1 MGP_C57BL6NJ_G0029718.1 mouse_genomes_project 5 6420727 6473812 + MGP_C57BL6NJ_P0070637 Abcb4 protein_coding protein_coding MGP_C57BL6NJ_T0070638.1 MGP_C57BL6NJ_G0029718.1 mouse_genomes_project 5 6461484 6464771 + Abcb4 protein_coding retained_intron MGP_C57BL6NJ_T0070639.1 MGP_C57BL6NJ_G0029718.1 mouse_genomes_project 5 6508099 6508779 + Abcb4 protein_coding retained_intron MGP_C57BL6NJ_T0074615.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130899540 130927660 + MGP_C57BL6NJ_P0074615 Anapc7 protein_coding protein_coding MGP_C57BL6NJ_T0074616.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130900291 130927660 + MGP_C57BL6NJ_P0074616 Anapc7 protein_coding protein_coding MGP_C57BL6NJ_T0074617.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130900328 130926182 + MGP_C57BL6NJ_P0074617 Anapc7 protein_coding protein_coding MGP_C57BL6NJ_T0074618.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130920939 130922051 + Anapc7 protein_coding retained_intron MGP_C57BL6NJ_T0074619.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130921704 130923369 + Anapc7 protein_coding retained_intron MGP_C57BL6NJ_T0074620.1 MGP_C57BL6NJ_G0030481.1 mouse_genomes_project 5 130922940 130923348 + MGP_C57BL6NJ_P0074620 Anapc7 protein_coding protein_coding MGP_C57BL6NJ_T0076312.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156088327 156103384 + MGP_C57BL6NJ_P0076312 Cpsf4 protein_coding protein_coding MGP_C57BL6NJ_T0076313.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156088338 156103384 + MGP_C57BL6NJ_P0076313 Cpsf4 protein_coding protein_coding MGP_C57BL6NJ_T0076314.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156088368 156103096 + MGP_C57BL6NJ_P0076314 Cpsf4 protein_coding protein_coding MGP_C57BL6NJ_T0076315.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156088382 156102575 + MGP_C57BL6NJ_P0076315 Cpsf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076316.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156088471 156103392 + MGP_C57BL6NJ_P0076316 Cpsf4 protein_coding protein_coding MGP_C57BL6NJ_T0076317.1 MGP_C57BL6NJ_G0030791.1 mouse_genomes_project 5 156091885 156103384 + Cpsf4 protein_coding retained_intron MGP_C57BL6NJ_T0001780.1 MGP_C57BL6NJ_G0001674.1 mouse_genomes_project 5 68238772 68239686 + TEC TEC MGP_C57BL6NJ_T0075995.1 MGP_C57BL6NJ_G0030723.1 mouse_genomes_project 5 150172343 150195360 - MGP_C57BL6NJ_P0075995 Gm26938 protein_coding protein_coding MGP_C57BL6NJ_T0074577.1 MGP_C57BL6NJ_G0030473.1 mouse_genomes_project 5 130657571 130690072 + MGP_C57BL6NJ_P0074577 Hvcn1 protein_coding protein_coding MGP_C57BL6NJ_T0074578.1 MGP_C57BL6NJ_G0030473.1 mouse_genomes_project 5 130660496 130700577 + MGP_C57BL6NJ_P0074578 Hvcn1 protein_coding protein_coding MGP_C57BL6NJ_T0074579.1 MGP_C57BL6NJ_G0030473.1 mouse_genomes_project 5 130660676 130696789 + MGP_C57BL6NJ_P0074579 Hvcn1 protein_coding protein_coding MGP_C57BL6NJ_T0074580.1 MGP_C57BL6NJ_G0030473.1 mouse_genomes_project 5 130660880 130694361 + MGP_C57BL6NJ_P0074580 Hvcn1 protein_coding protein_coding MGP_C57BL6NJ_T0074581.1 MGP_C57BL6NJ_G0030473.1 mouse_genomes_project 5 130660901 130700577 + MGP_C57BL6NJ_P0074581 Hvcn1 protein_coding protein_coding MGP_C57BL6NJ_T0001649.1 MGP_C57BL6NJ_G0001545.1 mouse_genomes_project 5 35755253 35755899 - TEC TEC MGP_C57BL6NJ_T0010928.1 MGP_C57BL6NJ_G0009013.1 mouse_genomes_project 5 52271637 52271724 - Gm44377 miRNA miRNA MGP_C57BL6NJ_T0010984.1 MGP_C57BL6NJ_G0009069.1 mouse_genomes_project 5 148315027 148315109 - Mir106b miRNA miRNA MGP_C57BL6NJ_T0004956.1 MGP_C57BL6NJ_G0004269.1 mouse_genomes_project 5 123788357 123789276 + Gm13837 antisense antisense MGP_C57BL6NJ_T0018634.1 MGP_C57BL6NJ_G0015999.1 mouse_genomes_project 5 95291727 95332233 - Gm43448 processed_transcript processed_transcript MGP_C57BL6NJ_T0018635.1 MGP_C57BL6NJ_G0015999.1 mouse_genomes_project 5 95310939 95332253 - Gm43448 processed_transcript processed_transcript MGP_C57BL6NJ_T0008659.1 MGP_C57BL6NJ_G0007019.1 mouse_genomes_project 5 162252259 162254738 - Gm43598 lincRNA lincRNA MGP_C57BL6NJ_T0100458.1 MGP_C57BL6NJ_G0038504.1 mouse_genomes_project 5 83897429 83897536 + Gm24304 snRNA snRNA MGP_C57BL6NJ_T0004994.1 MGP_C57BL6NJ_G0004293.1 mouse_genomes_project 5 132989407 132996818 + Pitpnm2os1 antisense antisense MGP_C57BL6NJ_T0076480.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160342602 160405346 - MGP_C57BL6NJ_P0076480 Katnal1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0076481.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160342609 160405357 - MGP_C57BL6NJ_P0076481 Katnal1 protein_coding protein_coding MGP_C57BL6NJ_T0076482.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160346708 160351089 - Katnal1 protein_coding retained_intron MGP_C57BL6NJ_T0076483.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160357617 160405710 - Katnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0076484.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160365606 160406030 - MGP_C57BL6NJ_P0076484 Katnal1 protein_coding protein_coding MGP_C57BL6NJ_T0076486.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160377864 160405338 - MGP_C57BL6NJ_P0076486 Katnal1 protein_coding protein_coding MGP_C57BL6NJ_T0076487.1 MGP_C57BL6NJ_G0030834.1 mouse_genomes_project 5 160401330 160405375 - Katnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0001976.1 MGP_C57BL6NJ_G0001868.1 mouse_genomes_project 5 138717327 138718265 - TEC TEC MGP_C57BL6NJ_T0076303.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156059975 156069035 + MGP_C57BL6NJ_P0076303 Bud31 protein_coding protein_coding MGP_C57BL6NJ_T0076304.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156060009 156061276 + Bud31 protein_coding retained_intron MGP_C57BL6NJ_T0076305.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156060010 156069031 + MGP_C57BL6NJ_P0076305 Bud31 protein_coding protein_coding MGP_C57BL6NJ_T0076306.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156060021 156069031 + MGP_C57BL6NJ_P0076306 Bud31 protein_coding protein_coding MGP_C57BL6NJ_T0076307.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156060028 156069028 + MGP_C57BL6NJ_P0076307 Bud31 protein_coding protein_coding MGP_C57BL6NJ_T0076308.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156061761 156065904 + Bud31 protein_coding retained_intron MGP_C57BL6NJ_T0076309.1 MGP_C57BL6NJ_G0030789.1 mouse_genomes_project 5 156065760 156068940 + Bud31 protein_coding retained_intron MGP_C57BL6NJ_T0099461.1 MGP_C57BL6NJ_G0037518.1 mouse_genomes_project 5 2581627 2584237 - Gm43728 sense_intronic sense_intronic MGP_C57BL6NJ_T0073319.1 MGP_C57BL6NJ_G0030220.1 mouse_genomes_project 5 106407779 106427299 - MGP_C57BL6NJ_P0073319 Coq2 protein_coding protein_coding MGP_C57BL6NJ_T0073320.1 MGP_C57BL6NJ_G0030220.1 mouse_genomes_project 5 106408314 106427214 - MGP_C57BL6NJ_P0073320 Coq2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073321.1 MGP_C57BL6NJ_G0030220.1 mouse_genomes_project 5 106411002 106427307 - MGP_C57BL6NJ_P0073321 Coq2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070501.1 MGP_C57BL6NJ_G0029698.1 mouse_genomes_project 5 1189859 1212437 - MGP_C57BL6NJ_P0070501 Cyp51 protein_coding protein_coding MGP_C57BL6NJ_T0070502.1 MGP_C57BL6NJ_G0029698.1 mouse_genomes_project 5 1191994 1212034 - Cyp51 protein_coding processed_transcript MGP_C57BL6NJ_T0070503.1 MGP_C57BL6NJ_G0029698.1 mouse_genomes_project 5 1206966 1211072 - Cyp51 protein_coding retained_intron MGP_C57BL6NJ_T0070504.1 MGP_C57BL6NJ_G0029698.1 mouse_genomes_project 5 1208739 1212112 - Cyp51 protein_coding retained_intron MGP_C57BL6NJ_T0002044.1 MGP_C57BL6NJ_G0001935.1 mouse_genomes_project 5 159972860 159973505 - TEC TEC MGP_C57BL6NJ_T0015291.1 MGP_C57BL6NJ_G0013336.1 mouse_genomes_project 5 23424984 23425623 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071804.1 MGP_C57BL6NJ_G0029917.1 mouse_genomes_project 5 36227145 36620928 - MGP_C57BL6NJ_P0071804 Sorcs2 protein_coding protein_coding MGP_C57BL6NJ_T0071805.1 MGP_C57BL6NJ_G0029917.1 mouse_genomes_project 5 36270882 36620911 - Sorcs2 protein_coding retained_intron MGP_C57BL6NJ_T0071806.1 MGP_C57BL6NJ_G0029917.1 mouse_genomes_project 5 36275178 36483867 - MGP_C57BL6NJ_P0071806 Sorcs2 protein_coding protein_coding MGP_C57BL6NJ_T0071807.1 MGP_C57BL6NJ_G0029917.1 mouse_genomes_project 5 36362725 36620943 - MGP_C57BL6NJ_P0071807 Sorcs2 protein_coding protein_coding MGP_C57BL6NJ_T0071808.1 MGP_C57BL6NJ_G0029917.1 mouse_genomes_project 5 36363755 36587350 - Sorcs2 protein_coding processed_transcript MGP_C57BL6NJ_T0008441.1 MGP_C57BL6NJ_G0006874.1 mouse_genomes_project 5 114188074 114220134 - Gm26692 lincRNA lincRNA MGP_C57BL6NJ_T0100473.1 MGP_C57BL6NJ_G0038519.1 mouse_genomes_project 5 109857168 109857275 + Gm24897 snRNA snRNA MGP_C57BL6NJ_T0073229.1 MGP_C57BL6NJ_G0030201.1 mouse_genomes_project 5 102922986 102924866 - MGP_C57BL6NJ_P0073229 Gk2 protein_coding protein_coding MGP_C57BL6NJ_T0015377.1 MGP_C57BL6NJ_G0013422.1 mouse_genomes_project 5 60759603 60760297 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008613.1 MGP_C57BL6NJ_G0006985.1 mouse_genomes_project 5 154561082 154570126 + D130017N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0008614.1 MGP_C57BL6NJ_G0006985.1 mouse_genomes_project 5 154562590 154571446 + D130017N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0008616.1 MGP_C57BL6NJ_G0006985.1 mouse_genomes_project 5 154570626 154572891 + D130017N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0072471.1 MGP_C57BL6NJ_G0030030.1 mouse_genomes_project 5 70520002 70555689 + MGP_C57BL6NJ_P0072471 Gm5108 protein_coding protein_coding MGP_C57BL6NJ_T0072472.1 MGP_C57BL6NJ_G0030030.1 mouse_genomes_project 5 70520072 70555619 + Gm5108 protein_coding antisense MGP_C57BL6NJ_T0072473.1 MGP_C57BL6NJ_G0030030.1 mouse_genomes_project 5 70520072 70555624 + Gm5108 protein_coding antisense MGP_C57BL6NJ_T0070663.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845855 7107830 + MGP_C57BL6NJ_P0070663 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070664.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845864 7091305 + MGP_C57BL6NJ_P0070664 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070665.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845867 7037259 + 9330182L06Rik protein_coding retained_intron MGP_C57BL6NJ_T0070666.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845869 7091689 + MGP_C57BL6NJ_P0070666 9330182L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0070667.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845869 7108811 + MGP_C57BL6NJ_P0070667 9330182L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0070668.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845886 7109919 + MGP_C57BL6NJ_P0070668 9330182L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0070669.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 6845912 7089192 + MGP_C57BL6NJ_P0070669 9330182L06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070670.1 MGP_C57BL6NJ_G0029722.1 mouse_genomes_project 5 7043665 7048397 + 9330182L06Rik protein_coding retained_intron MGP_C57BL6NJ_T0008460.1 MGP_C57BL6NJ_G0006885.1 mouse_genomes_project 5 117709427 117710673 + Gm26515 lincRNA lincRNA MGP_C57BL6NJ_T0071810.1 MGP_C57BL6NJ_G0029919.1 mouse_genomes_project 5 36708364 36717198 + MGP_C57BL6NJ_P0071810 Grpel1 protein_coding protein_coding MGP_C57BL6NJ_T0070686.1 MGP_C57BL6NJ_G0029726.1 mouse_genomes_project 5 12148449 12156160 + MGP_C57BL6NJ_P0070686 protein_coding protein_coding MGP_C57BL6NJ_T0010989.1 MGP_C57BL6NJ_G0009074.1 mouse_genomes_project 5 151573021 151573102 + Gm44385 miRNA miRNA MGP_C57BL6NJ_T0071892.1 MGP_C57BL6NJ_G0029933.1 mouse_genomes_project 5 37734390 38035401 - MGP_C57BL6NJ_P0071892 Stk32b protein_coding protein_coding MGP_C57BL6NJ_T0008584.1 MGP_C57BL6NJ_G0006960.1 mouse_genomes_project 5 140765844 140791788 - Gm42590 lincRNA lincRNA MGP_C57BL6NJ_T0070715.1 MGP_C57BL6NJ_G0029734.1 mouse_genomes_project 5 16151335 16154686 + protein_coding retained_intron MGP_C57BL6NJ_T0008589.1 MGP_C57BL6NJ_G0006965.1 mouse_genomes_project 5 144611735 144612588 + 4933439J24Rik lincRNA lincRNA MGP_C57BL6NJ_T0005026.1 MGP_C57BL6NJ_G0004319.1 mouse_genomes_project 5 147933568 147945002 + antisense antisense MGP_C57BL6NJ_T0075196.1 MGP_C57BL6NJ_G0030576.1 mouse_genomes_project 5 139526430 139561297 + Tyw1 protein_coding retained_intron MGP_C57BL6NJ_T0075197.1 MGP_C57BL6NJ_G0030576.1 mouse_genomes_project 5 139527846 139553654 + MGP_C57BL6NJ_P0075197 Tyw1 protein_coding protein_coding MGP_C57BL6NJ_T0075198.1 MGP_C57BL6NJ_G0030576.1 mouse_genomes_project 5 139527846 139628722 + MGP_C57BL6NJ_P0075198 Tyw1 protein_coding protein_coding MGP_C57BL6NJ_T0075199.1 MGP_C57BL6NJ_G0030576.1 mouse_genomes_project 5 139530987 139543153 + MGP_C57BL6NJ_P0075199 Tyw1 protein_coding protein_coding MGP_C57BL6NJ_T0001623.1 MGP_C57BL6NJ_G0001521.1 mouse_genomes_project 5 30602671 30604736 - TEC TEC MGP_C57BL6NJ_T0075103.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954278 138961338 + MGP_C57BL6NJ_P0075103 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075104.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954284 138957262 + MGP_C57BL6NJ_P0075104 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075105.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954285 138957179 + MGP_C57BL6NJ_P0075105 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075106.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954290 138956801 + MGP_C57BL6NJ_P0075106 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075107.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954292 138957657 + MGP_C57BL6NJ_P0075107 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075108.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954297 138957473 + MGP_C57BL6NJ_P0075108 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075109.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954299 138956127 + Mrps17 protein_coding retained_intron MGP_C57BL6NJ_T0075110.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954315 138956836 + MGP_C57BL6NJ_P0075110 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075111.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954339 138957072 + MGP_C57BL6NJ_P0075111 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075112.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954358 138957229 + MGP_C57BL6NJ_P0075112 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0075113.1 MGP_C57BL6NJ_G0030559.1 mouse_genomes_project 5 138954478 138955615 + MGP_C57BL6NJ_P0075113 Mrps17 protein_coding protein_coding MGP_C57BL6NJ_T0008224.1 MGP_C57BL6NJ_G0006715.1 mouse_genomes_project 5 15500237 15501982 + Gm28710 lincRNA lincRNA MGP_C57BL6NJ_T0001973.1 MGP_C57BL6NJ_G0001865.1 mouse_genomes_project 5 137615753 137617163 + TEC TEC MGP_C57BL6NJ_T0010929.1 MGP_C57BL6NJ_G0009014.1 mouse_genomes_project 5 53231506 53231622 - Mir6417 miRNA miRNA MGP_C57BL6NJ_T0073697.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116984577 116988800 - MGP_C57BL6NJ_P0073697 Gtpbp6 protein_coding protein_coding MGP_C57BL6NJ_T0073698.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116984580 116985938 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073699.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116984581 116987805 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073700.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116984623 116988118 - MGP_C57BL6NJ_P0073700 Gtpbp6 protein_coding protein_coding MGP_C57BL6NJ_T0073701.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116985510 116987779 - Gtpbp6 protein_coding processed_transcript MGP_C57BL6NJ_T0073702.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116985834 116988019 - MGP_C57BL6NJ_P0073702 Gtpbp6 protein_coding protein_coding MGP_C57BL6NJ_T0073703.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116986393 116987527 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073704.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116987251 116988743 - Gtpbp6 protein_coding processed_transcript MGP_C57BL6NJ_T0073705.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116987303 116988210 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073706.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116987450 116988035 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073707.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116987638 116988314 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0073708.1 MGP_C57BL6NJ_G0030307.1 mouse_genomes_project 5 116987651 116988764 - Gtpbp6 protein_coding retained_intron MGP_C57BL6NJ_T0015612.1 MGP_C57BL6NJ_G0013657.1 mouse_genomes_project 5 160044229 160044407 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075974.1 MGP_C57BL6NJ_G0030718.1 mouse_genomes_project 5 149864725 149869412 + MGP_C57BL6NJ_P0075974 Uncx protein_coding protein_coding MGP_C57BL6NJ_T0075975.1 MGP_C57BL6NJ_G0030718.1 mouse_genomes_project 5 149865129 149866500 + MGP_C57BL6NJ_P0075975 Uncx protein_coding protein_coding MGP_C57BL6NJ_T0099115.1 MGP_C57BL6NJ_G0037179.1 mouse_genomes_project 5 54630060 54630170 + Gm26486 rRNA rRNA MGP_C57BL6NJ_T0001925.1 MGP_C57BL6NJ_G0001818.1 mouse_genomes_project 5 126372838 126374230 - TEC TEC MGP_C57BL6NJ_T0070788.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20617656 20634641 + MGP_C57BL6NJ_P0070788 Armc10 protein_coding protein_coding MGP_C57BL6NJ_T0070789.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20617722 20635719 + MGP_C57BL6NJ_P0070789 Armc10 protein_coding protein_coding MGP_C57BL6NJ_T0070790.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20617860 20620507 + Armc10 protein_coding processed_transcript MGP_C57BL6NJ_T0070791.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20617896 20635633 + MGP_C57BL6NJ_P0070791 Armc10 protein_coding protein_coding MGP_C57BL6NJ_T0070792.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20617946 20635635 + MGP_C57BL6NJ_P0070792 Armc10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0070793.1 MGP_C57BL6NJ_G0029750.1 mouse_genomes_project 5 20620356 20624672 + Armc10 protein_coding retained_intron MGP_C57BL6NJ_T0101744.1 MGP_C57BL6NJ_G0039790.1 mouse_genomes_project 5 81061033 81061156 - Gm22011 snoRNA snoRNA MGP_C57BL6NJ_T0072475.1 MGP_C57BL6NJ_G0030032.1 mouse_genomes_project 5 71813870 72057599 - MGP_C57BL6NJ_P0072475 Kctd8 protein_coding protein_coding MGP_C57BL6NJ_T0072476.1 MGP_C57BL6NJ_G0030032.1 mouse_genomes_project 5 72005187 72057597 - MGP_C57BL6NJ_P0072476 Kctd8 protein_coding protein_coding MGP_C57BL6NJ_T0001997.1 MGP_C57BL6NJ_G0001889.1 mouse_genomes_project 5 141379247 141380221 - TEC TEC MGP_C57BL6NJ_T0004873.1 MGP_C57BL6NJ_G0004211.1 mouse_genomes_project 5 70511971 70521417 - 4930425K10Rik antisense antisense MGP_C57BL6NJ_T0001766.1 MGP_C57BL6NJ_G0001660.1 mouse_genomes_project 5 67620625 67621812 - TEC TEC MGP_C57BL6NJ_T0071157.1 MGP_C57BL6NJ_G0029822.1 mouse_genomes_project 5 30281707 30318429 + MGP_C57BL6NJ_P0071157 Kcnk3 protein_coding protein_coding MGP_C57BL6NJ_T0071158.1 MGP_C57BL6NJ_G0029822.1 mouse_genomes_project 5 30314530 30315390 + Kcnk3 protein_coding processed_transcript MGP_C57BL6NJ_T0071452.1 MGP_C57BL6NJ_G0029863.1 mouse_genomes_project 5 32004577 32026626 + MGP_C57BL6NJ_P0071452 Fosl2 protein_coding protein_coding MGP_C57BL6NJ_T0071453.1 MGP_C57BL6NJ_G0029863.1 mouse_genomes_project 5 32004949 32008440 + Fosl2 protein_coding retained_intron MGP_C57BL6NJ_T0071454.1 MGP_C57BL6NJ_G0029863.1 mouse_genomes_project 5 32015304 32022497 + Fosl2 protein_coding retained_intron MGP_C57BL6NJ_T0015515.1 MGP_C57BL6NJ_G0013560.1 mouse_genomes_project 5 116344951 116345522 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075808.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148313873 148321780 - MGP_C57BL6NJ_P0075808 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075809.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148313882 148321183 - MGP_C57BL6NJ_P0075809 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075810.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148313890 148315007 - Mcm7 protein_coding retained_intron MGP_C57BL6NJ_T0075811.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148313890 148321176 - MGP_C57BL6NJ_P0075811 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075812.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148317350 148319739 - Mcm7 protein_coding retained_intron MGP_C57BL6NJ_T0075813.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148317746 148320624 - MGP_C57BL6NJ_P0075813 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075814.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148317999 148319001 - Mcm7 protein_coding retained_intron MGP_C57BL6NJ_T0075815.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148318168 148320375 - MGP_C57BL6NJ_P0075815 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075816.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148318169 148321173 - MGP_C57BL6NJ_P0075816 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0075817.1 MGP_C57BL6NJ_G0030686.1 mouse_genomes_project 5 148318566 148320019 - MGP_C57BL6NJ_P0075817 Mcm7 protein_coding protein_coding MGP_C57BL6NJ_T0008382.1 MGP_C57BL6NJ_G0006830.1 mouse_genomes_project 5 96591123 96593644 - lincRNA lincRNA MGP_C57BL6NJ_T0004827.1 MGP_C57BL6NJ_G0004175.1 mouse_genomes_project 5 34786306 34788066 + Gm15522 antisense antisense MGP_C57BL6NJ_T0011857.1 MGP_C57BL6NJ_G0009942.1 mouse_genomes_project 5 68796609 68796932 - Gm23183 misc_RNA misc_RNA MGP_C57BL6NJ_T0073498.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113336731 113391868 - MGP_C57BL6NJ_P0073498 Hfm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073499.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113336733 113425175 - MGP_C57BL6NJ_P0073499 Hfm1 protein_coding protein_coding MGP_C57BL6NJ_T0073500.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113336736 113424744 - MGP_C57BL6NJ_P0073500 Hfm1 protein_coding protein_coding MGP_C57BL6NJ_T0073501.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113337198 113421737 - MGP_C57BL6NJ_P0073501 Hfm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073502.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113338101 113386463 - MGP_C57BL6NJ_P0073502 Hfm1 protein_coding protein_coding MGP_C57BL6NJ_T0073503.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113399477 113425112 - Hfm1 protein_coding retained_intron MGP_C57BL6NJ_T0073504.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113399477 113424744 - MGP_C57BL6NJ_P0073504 Hfm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073505.1 MGP_C57BL6NJ_G0030262.1 mouse_genomes_project 5 113399661 113424706 - MGP_C57BL6NJ_P0073505 Hfm1 protein_coding protein_coding MGP_C57BL6NJ_T0076510.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962343 161000790 + MGP_C57BL6NJ_P0076510 Tex26 protein_coding protein_coding MGP_C57BL6NJ_T0076511.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962365 160963685 + Tex26 protein_coding processed_transcript MGP_C57BL6NJ_T0076512.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962389 161000790 + MGP_C57BL6NJ_P0076512 Tex26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076513.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962398 161000702 + MGP_C57BL6NJ_P0076513 Tex26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076514.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962402 161000702 + MGP_C57BL6NJ_P0076514 Tex26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076515.1 MGP_C57BL6NJ_G0030840.1 mouse_genomes_project 5 160962410 161000608 + MGP_C57BL6NJ_P0076515 Tex26 protein_coding protein_coding MGP_C57BL6NJ_T0073536.1 MGP_C57BL6NJ_G0030271.1 mouse_genomes_project 5 114062254 114077548 + MGP_C57BL6NJ_P0073536 1700028K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0073537.1 MGP_C57BL6NJ_G0030271.1 mouse_genomes_project 5 114062265 114080457 + 1700028K03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0073538.1 MGP_C57BL6NJ_G0030271.1 mouse_genomes_project 5 114062282 114078384 + MGP_C57BL6NJ_P0073538 1700028K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0073539.1 MGP_C57BL6NJ_G0030271.1 mouse_genomes_project 5 114062302 114078192 + 1700028K03Rik protein_coding retained_intron MGP_C57BL6NJ_T0073155.1 MGP_C57BL6NJ_G0030185.1 mouse_genomes_project 5 97511937 97521779 - Ccdc158 protein_coding retained_intron MGP_C57BL6NJ_T0073156.1 MGP_C57BL6NJ_G0030185.1 mouse_genomes_project 5 97512236 97585996 - MGP_C57BL6NJ_P0073156 Ccdc158 protein_coding protein_coding MGP_C57BL6NJ_T0073157.1 MGP_C57BL6NJ_G0030185.1 mouse_genomes_project 5 97562905 97586136 - MGP_C57BL6NJ_P0073157 Ccdc158 protein_coding protein_coding MGP_C57BL6NJ_T0073158.1 MGP_C57BL6NJ_G0030185.1 mouse_genomes_project 5 97562905 97586142 - MGP_C57BL6NJ_P0073158 Ccdc158 protein_coding protein_coding MGP_C57BL6NJ_T0076447.1 MGP_C57BL6NJ_G0030829.1 mouse_genomes_project 5 159190134 159192329 + Pomp protein_coding retained_intron MGP_C57BL6NJ_T0076448.1 MGP_C57BL6NJ_G0030829.1 mouse_genomes_project 5 159190150 159202591 + MGP_C57BL6NJ_P0076448 Pomp protein_coding protein_coding MGP_C57BL6NJ_T0076449.1 MGP_C57BL6NJ_G0030829.1 mouse_genomes_project 5 159190186 159205059 + MGP_C57BL6NJ_P0076449 Pomp protein_coding protein_coding MGP_C57BL6NJ_T0076450.1 MGP_C57BL6NJ_G0030829.1 mouse_genomes_project 5 159199885 159205139 + Pomp protein_coding processed_transcript MGP_C57BL6NJ_T0076451.1 MGP_C57BL6NJ_G0030829.1 mouse_genomes_project 5 159201961 159205097 + Pomp protein_coding retained_intron MGP_C57BL6NJ_T0015469.1 MGP_C57BL6NJ_G0013514.1 mouse_genomes_project 5 103554624 103554935 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005022.1 MGP_C57BL6NJ_G0004315.1 mouse_genomes_project 5 145981548 145982253 - Gm43604 antisense antisense MGP_C57BL6NJ_T0076270.1 MGP_C57BL6NJ_G0030784.1 mouse_genomes_project 5 155742720 155752702 - Smurf1 protein_coding retained_intron MGP_C57BL6NJ_T0076271.1 MGP_C57BL6NJ_G0030784.1 mouse_genomes_project 5 155742720 155845247 - MGP_C57BL6NJ_P0076271 Smurf1 protein_coding protein_coding MGP_C57BL6NJ_T0076272.1 MGP_C57BL6NJ_G0030784.1 mouse_genomes_project 5 155742727 155845255 - MGP_C57BL6NJ_P0076272 Smurf1 protein_coding protein_coding MGP_C57BL6NJ_T0076273.1 MGP_C57BL6NJ_G0030784.1 mouse_genomes_project 5 155745336 155845255 - MGP_C57BL6NJ_P0076273 Smurf1 protein_coding protein_coding MGP_C57BL6NJ_T0076274.1 MGP_C57BL6NJ_G0030784.1 mouse_genomes_project 5 155750817 155765767 - MGP_C57BL6NJ_P0076274 Smurf1 protein_coding protein_coding MGP_C57BL6NJ_T0001980.1 MGP_C57BL6NJ_G0001872.1 mouse_genomes_project 5 139202969 139204830 + TEC TEC MGP_C57BL6NJ_T0004985.1 MGP_C57BL6NJ_G0004289.1 mouse_genomes_project 5 131922730 131942194 - Gm15857 antisense antisense MGP_C57BL6NJ_T0011869.1 MGP_C57BL6NJ_G0009954.1 mouse_genomes_project 5 119271818 119272179 - Gm27998 misc_RNA misc_RNA MGP_C57BL6NJ_T0074133.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122643451 122650097 + MGP_C57BL6NJ_P0074133 Pop5 protein_coding protein_coding MGP_C57BL6NJ_T0074134.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122647084 122649348 + Pop5 protein_coding processed_transcript MGP_C57BL6NJ_T0074135.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122647137 122654458 + MGP_C57BL6NJ_P0074135 Pop5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074136.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122647140 122650050 + Pop5 protein_coding processed_transcript MGP_C57BL6NJ_T0074137.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122647152 122649773 + Pop5 protein_coding retained_intron MGP_C57BL6NJ_T0074138.1 MGP_C57BL6NJ_G0030391.1 mouse_genomes_project 5 122649446 122650072 + Pop5 protein_coding processed_transcript MGP_C57BL6NJ_T0008632.1 MGP_C57BL6NJ_G0007002.1 mouse_genomes_project 5 160429852 160431267 + 8430423G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0001967.1 MGP_C57BL6NJ_G0001859.1 mouse_genomes_project 5 135382949 135383914 + TEC TEC MGP_C57BL6NJ_T0001841.1 MGP_C57BL6NJ_G0001734.1 mouse_genomes_project 5 85168851 85172293 + TEC TEC MGP_C57BL6NJ_T0008596.1 MGP_C57BL6NJ_G0006969.1 mouse_genomes_project 5 147174163 147181874 + Gm42562 lincRNA lincRNA MGP_C57BL6NJ_T0073068.1 MGP_C57BL6NJ_G0030170.1 mouse_genomes_project 5 96844308 96847119 + Gm1045 protein_coding retained_intron MGP_C57BL6NJ_T0073069.1 MGP_C57BL6NJ_G0030170.1 mouse_genomes_project 5 96844308 96852134 + MGP_C57BL6NJ_P0073069 Gm1045 protein_coding protein_coding MGP_C57BL6NJ_T0001694.1 MGP_C57BL6NJ_G0001590.1 mouse_genomes_project 5 49442605 49445203 - TEC TEC MGP_C57BL6NJ_T0099117.1 MGP_C57BL6NJ_G0037181.1 mouse_genomes_project 5 79239394 79239517 - Gm24738 rRNA rRNA MGP_C57BL6NJ_T0075721.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147665723 147679199 + MGP_C57BL6NJ_P0075721 protein_coding protein_coding MGP_C57BL6NJ_T0075722.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147665745 147673403 + protein_coding retained_intron MGP_C57BL6NJ_T0075723.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147665754 147674218 + MGP_C57BL6NJ_P0075723 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075725.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147665780 147670490 + MGP_C57BL6NJ_P0075725 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075726.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147665780 147679204 + MGP_C57BL6NJ_P0075726 protein_coding protein_coding MGP_C57BL6NJ_T0075727.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147666732 147678285 + MGP_C57BL6NJ_P0075727 protein_coding protein_coding MGP_C57BL6NJ_T0075728.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147674923 147677468 + MGP_C57BL6NJ_P0075728 protein_coding protein_coding MGP_C57BL6NJ_T0075729.1 MGP_C57BL6NJ_G0030666.1 mouse_genomes_project 5 147677470 147678344 + MGP_C57BL6NJ_P0075729 protein_coding protein_coding MGP_C57BL6NJ_T0073087.1 MGP_C57BL6NJ_G0030173.1 mouse_genomes_project 5 97009289 97074596 + MGP_C57BL6NJ_P0073087 Uso1 protein_coding protein_coding MGP_C57BL6NJ_T0073088.1 MGP_C57BL6NJ_G0030173.1 mouse_genomes_project 5 97009297 97074599 + MGP_C57BL6NJ_P0073088 Uso1 protein_coding protein_coding MGP_C57BL6NJ_T0073089.1 MGP_C57BL6NJ_G0030173.1 mouse_genomes_project 5 97009298 97055968 + Uso1 protein_coding retained_intron MGP_C57BL6NJ_T0073090.1 MGP_C57BL6NJ_G0030173.1 mouse_genomes_project 5 97009317 97074597 + MGP_C57BL6NJ_P0073090 Uso1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073091.1 MGP_C57BL6NJ_G0030173.1 mouse_genomes_project 5 97053301 97074576 + Uso1 protein_coding processed_transcript MGP_C57BL6NJ_T0008212.1 MGP_C57BL6NJ_G0006705.1 mouse_genomes_project 5 2012405 2030076 - Gm42744 lincRNA lincRNA MGP_C57BL6NJ_T0075384.1 MGP_C57BL6NJ_G0030604.1 mouse_genomes_project 5 144796600 144801968 - MGP_C57BL6NJ_P0075384 Vps37d protein_coding protein_coding MGP_C57BL6NJ_T0075385.1 MGP_C57BL6NJ_G0030604.1 mouse_genomes_project 5 144796603 144801968 - MGP_C57BL6NJ_P0075385 Vps37d protein_coding protein_coding MGP_C57BL6NJ_T0073402.1 MGP_C57BL6NJ_G0030235.1 mouse_genomes_project 5 109819778 109844096 - MGP_C57BL6NJ_P0073402 Klhl8 protein_coding protein_coding MGP_C57BL6NJ_T0073403.1 MGP_C57BL6NJ_G0030235.1 mouse_genomes_project 5 109819778 109844096 - MGP_C57BL6NJ_P0073403 Klhl8 protein_coding protein_coding MGP_C57BL6NJ_T0073404.1 MGP_C57BL6NJ_G0030235.1 mouse_genomes_project 5 109819855 109870323 - MGP_C57BL6NJ_P0073404 Klhl8 protein_coding protein_coding MGP_C57BL6NJ_T0073405.1 MGP_C57BL6NJ_G0030235.1 mouse_genomes_project 5 109819885 109844096 - MGP_C57BL6NJ_P0073405 Klhl8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073406.1 MGP_C57BL6NJ_G0030235.1 mouse_genomes_project 5 109828115 109832175 - Klhl8 protein_coding retained_intron MGP_C57BL6NJ_T0008394.1 MGP_C57BL6NJ_G0006842.1 mouse_genomes_project 5 102861115 103123397 + 4930467D21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008395.1 MGP_C57BL6NJ_G0006842.1 mouse_genomes_project 5 102861145 103059495 + 4930467D21Rik lincRNA lincRNA MGP_C57BL6NJ_T0001961.1 MGP_C57BL6NJ_G0001854.1 mouse_genomes_project 5 133063417 133064721 - TEC TEC MGP_C57BL6NJ_T0002024.1 MGP_C57BL6NJ_G0001915.1 mouse_genomes_project 5 146419581 146426463 - TEC TEC MGP_C57BL6NJ_T0004945.1 MGP_C57BL6NJ_G0004261.1 mouse_genomes_project 5 122081585 122082832 - 4930515G01Rik antisense antisense MGP_C57BL6NJ_T0072181.1 MGP_C57BL6NJ_G0029982.1 mouse_genomes_project 5 54212216 54235534 + MGP_C57BL6NJ_P0072181 Slc34a2 protein_coding protein_coding MGP_C57BL6NJ_T0072182.1 MGP_C57BL6NJ_G0029982.1 mouse_genomes_project 5 54223484 54246376 + MGP_C57BL6NJ_P0072182 Slc34a2 protein_coding protein_coding MGP_C57BL6NJ_T0072183.1 MGP_C57BL6NJ_G0029982.1 mouse_genomes_project 5 54223485 54240419 + Slc34a2 protein_coding retained_intron MGP_C57BL6NJ_T0073583.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636005 114678872 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073584.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636042 114679167 + MGP_C57BL6NJ_P0073584 Mtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073585.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636047 114679333 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073586.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636047 114679978 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073587.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636048 114639917 + Mtf2 protein_coding retained_intron MGP_C57BL6NJ_T0073588.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636060 114657743 + MGP_C57BL6NJ_P0073588 Mtf2 protein_coding protein_coding MGP_C57BL6NJ_T0073589.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636073 114679979 + MGP_C57BL6NJ_P0073589 Mtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073590.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636073 114678709 + MGP_C57BL6NJ_P0073590 Mtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073591.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636073 114680713 + MGP_C57BL6NJ_P0073591 Mtf2 protein_coding protein_coding MGP_C57BL6NJ_T0073592.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636075 114678794 + MGP_C57BL6NJ_P0073592 Mtf2 protein_coding protein_coding MGP_C57BL6NJ_T0073593.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636075 114664587 + MGP_C57BL6NJ_P0073593 Mtf2 protein_coding protein_coding MGP_C57BL6NJ_T0073594.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114636088 114658331 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073595.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114643246 114651527 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073596.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114648508 114679179 + Mtf2 protein_coding processed_transcript MGP_C57BL6NJ_T0073597.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114657370 114672528 + MGP_C57BL6NJ_P0073597 Mtf2 protein_coding protein_coding MGP_C57BL6NJ_T0073598.1 MGP_C57BL6NJ_G0030279.1 mouse_genomes_project 5 114662522 114675743 + MGP_C57BL6NJ_P0073598 Mtf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015597.1 MGP_C57BL6NJ_G0013642.1 mouse_genomes_project 5 156970130 156970453 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076523.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161163127 161186309 - MGP_C57BL6NJ_P0076523 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076524.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161165384 161186476 - MGP_C57BL6NJ_P0076524 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076525.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161165685 161186347 - MGP_C57BL6NJ_P0076525 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076526.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161166009 161186476 - MGP_C57BL6NJ_P0076526 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076527.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161166295 161168014 - Hsph1 protein_coding retained_intron MGP_C57BL6NJ_T0076528.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161168733 161170028 - Hsph1 protein_coding retained_intron MGP_C57BL6NJ_T0076529.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161169522 161186476 - Hsph1 protein_coding retained_intron MGP_C57BL6NJ_T0076530.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161180121 161186514 - MGP_C57BL6NJ_P0076530 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076531.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161180577 161186428 - MGP_C57BL6NJ_P0076531 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076532.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161182176 161186489 - MGP_C57BL6NJ_P0076532 Hsph1 protein_coding protein_coding MGP_C57BL6NJ_T0076533.1 MGP_C57BL6NJ_G0030842.1 mouse_genomes_project 5 161182235 161184025 - Hsph1 protein_coding processed_transcript MGP_C57BL6NJ_T0075844.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148407533 148411873 - MGP_C57BL6NJ_P0075844 BC037034 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075845.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148407534 148411916 - BC037034 protein_coding retained_intron MGP_C57BL6NJ_T0075846.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148407987 148408828 - MGP_C57BL6NJ_P0075846 BC037034 protein_coding protein_coding MGP_C57BL6NJ_T0075847.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148408123 148411715 - MGP_C57BL6NJ_P0075847 BC037034 protein_coding protein_coding MGP_C57BL6NJ_T0075848.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148409452 148410077 - BC037034 protein_coding retained_intron MGP_C57BL6NJ_T0075849.1 MGP_C57BL6NJ_G0030693.1 mouse_genomes_project 5 148410135 148411021 - BC037034 protein_coding retained_intron MGP_C57BL6NJ_T0099119.1 MGP_C57BL6NJ_G0037183.1 mouse_genomes_project 5 96986787 96986894 - Gm24931 rRNA rRNA MGP_C57BL6NJ_T0008626.1 MGP_C57BL6NJ_G0006996.1 mouse_genomes_project 5 159301956 159314398 - lincRNA lincRNA MGP_C57BL6NJ_T0001769.1 MGP_C57BL6NJ_G0001663.1 mouse_genomes_project 5 67747766 67749241 - TEC TEC MGP_C57BL6NJ_T0015473.1 MGP_C57BL6NJ_G0013518.1 mouse_genomes_project 5 104626338 104626758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015347.1 MGP_C57BL6NJ_G0013392.1 mouse_genomes_project 5 44601464 44603226 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074186.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122955783 123007836 + MGP_C57BL6NJ_P0074186 Pxn protein_coding protein_coding MGP_C57BL6NJ_T0074187.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122955818 123007831 + Pxn protein_coding retained_intron MGP_C57BL6NJ_T0074188.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122955963 123007836 + MGP_C57BL6NJ_P0074188 Pxn protein_coding protein_coding MGP_C57BL6NJ_T0074189.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122965466 122996746 + Pxn protein_coding processed_transcript MGP_C57BL6NJ_T0074190.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122970779 123007831 + Pxn protein_coding processed_transcript MGP_C57BL6NJ_T0074191.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122995809 122997275 + Pxn protein_coding processed_transcript MGP_C57BL6NJ_T0074192.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122995976 122996811 + Pxn protein_coding retained_intron MGP_C57BL6NJ_T0074193.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122996658 123001619 + Pxn protein_coding retained_intron MGP_C57BL6NJ_T0074194.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 122997166 122997638 + Pxn protein_coding retained_intron MGP_C57BL6NJ_T0074195.1 MGP_C57BL6NJ_G0030402.1 mouse_genomes_project 5 123003787 123004641 + Pxn protein_coding retained_intron MGP_C57BL6NJ_T0073575.1 MGP_C57BL6NJ_G0030277.1 mouse_genomes_project 5 114455899 114469701 + MGP_C57BL6NJ_P0073575 Rpl5 protein_coding protein_coding MGP_C57BL6NJ_T0073576.1 MGP_C57BL6NJ_G0030277.1 mouse_genomes_project 5 114456041 114469706 + MGP_C57BL6NJ_P0073576 Rpl5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073577.1 MGP_C57BL6NJ_G0030277.1 mouse_genomes_project 5 114457518 114464591 + Rpl5 protein_coding retained_intron MGP_C57BL6NJ_T0073578.1 MGP_C57BL6NJ_G0030277.1 mouse_genomes_project 5 114464819 114468746 + Rpl5 protein_coding retained_intron MGP_C57BL6NJ_T0073579.1 MGP_C57BL6NJ_G0030277.1 mouse_genomes_project 5 114467317 114468751 + Rpl5 protein_coding retained_intron MGP_C57BL6NJ_T0074390.1 MGP_C57BL6NJ_G0030439.1 mouse_genomes_project 5 128652555 128668424 + MGP_C57BL6NJ_P0074390 Ddx54 protein_coding protein_coding MGP_C57BL6NJ_T0074391.1 MGP_C57BL6NJ_G0030439.1 mouse_genomes_project 5 128652943 128667459 + Ddx54 protein_coding retained_intron MGP_C57BL6NJ_T0074392.1 MGP_C57BL6NJ_G0030439.1 mouse_genomes_project 5 128658743 128661638 + Ddx54 protein_coding retained_intron MGP_C57BL6NJ_T0074393.1 MGP_C57BL6NJ_G0030439.1 mouse_genomes_project 5 128661166 128661637 + Ddx54 protein_coding retained_intron MGP_C57BL6NJ_T0001974.1 MGP_C57BL6NJ_G0001866.1 mouse_genomes_project 5 137700967 137702339 - TEC TEC MGP_C57BL6NJ_T0015458.1 MGP_C57BL6NJ_G0013503.1 mouse_genomes_project 5 96558719 96560088 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073858.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119413026 119455239 + MGP_C57BL6NJ_P0073858 Hps4 protein_coding protein_coding MGP_C57BL6NJ_T0073859.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119413036 119414691 + Hps4 protein_coding processed_transcript MGP_C57BL6NJ_T0073860.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119413038 119455239 + Hps4 protein_coding retained_intron MGP_C57BL6NJ_T0073861.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119413038 119455239 + MGP_C57BL6NJ_P0073861 Hps4 protein_coding protein_coding MGP_C57BL6NJ_T0073862.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119413043 119414831 + Hps4 protein_coding processed_transcript MGP_C57BL6NJ_T0073864.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119445569 119446599 + Hps4 protein_coding retained_intron MGP_C57BL6NJ_T0073865.1 MGP_C57BL6NJ_G0030335.1 mouse_genomes_project 5 119452159 119455226 + Hps4 protein_coding retained_intron MGP_C57BL6NJ_T0004925.1 MGP_C57BL6NJ_G0004245.1 mouse_genomes_project 5 113918623 113929264 - Gm42902 antisense antisense MGP_C57BL6NJ_T0071382.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31104559 31138105 + MGP_C57BL6NJ_P0071382 Gckr protein_coding protein_coding MGP_C57BL6NJ_T0071383.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31104670 31138086 + Gckr protein_coding retained_intron MGP_C57BL6NJ_T0071384.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31104697 31138093 + MGP_C57BL6NJ_P0071384 Gckr protein_coding protein_coding MGP_C57BL6NJ_T0071385.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31104728 31107697 + MGP_C57BL6NJ_P0071385 Gckr protein_coding protein_coding MGP_C57BL6NJ_T0071386.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31105817 31113687 + Gckr protein_coding retained_intron MGP_C57BL6NJ_T0071387.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31106622 31112593 + Gckr protein_coding retained_intron MGP_C57BL6NJ_T0071388.1 MGP_C57BL6NJ_G0029854.1 mouse_genomes_project 5 31137021 31138088 + Gckr protein_coding retained_intron MGP_C57BL6NJ_T0008323.1 MGP_C57BL6NJ_G0006783.1 mouse_genomes_project 5 62915728 62920440 - 1700014F14Rik lincRNA lincRNA MGP_C57BL6NJ_T0103209.1 MGP_C57BL6NJ_G0041003.1 mouse_genomes_project 5 101248685 101251175 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0071772.1 MGP_C57BL6NJ_G0029913.1 mouse_genomes_project 5 35858789 35887865 - MGP_C57BL6NJ_P0071772 Htra3 protein_coding protein_coding MGP_C57BL6NJ_T0071773.1 MGP_C57BL6NJ_G0029913.1 mouse_genomes_project 5 35858849 35887583 - MGP_C57BL6NJ_P0071773 Htra3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071774.1 MGP_C57BL6NJ_G0029913.1 mouse_genomes_project 5 35869337 35887961 - MGP_C57BL6NJ_P0071774 Htra3 protein_coding protein_coding MGP_C57BL6NJ_T0071775.1 MGP_C57BL6NJ_G0029913.1 mouse_genomes_project 5 35875971 35879331 - MGP_C57BL6NJ_P0071775 Htra3 protein_coding protein_coding MGP_C57BL6NJ_T0071776.1 MGP_C57BL6NJ_G0029913.1 mouse_genomes_project 5 35886871 35887951 - Htra3 protein_coding retained_intron MGP_C57BL6NJ_T0018611.1 MGP_C57BL6NJ_G0015991.1 mouse_genomes_project 5 54135540 54157817 - 5033403H07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018612.1 MGP_C57BL6NJ_G0015991.1 mouse_genomes_project 5 54135552 54155291 - 5033403H07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018613.1 MGP_C57BL6NJ_G0015991.1 mouse_genomes_project 5 54153417 54155342 - 5033403H07Rik processed_transcript retained_intron MGP_C57BL6NJ_T0008291.1 MGP_C57BL6NJ_G0006755.1 mouse_genomes_project 5 39885429 39907848 + Gm42524 lincRNA lincRNA MGP_C57BL6NJ_T0074495.1 MGP_C57BL6NJ_G0030463.1 mouse_genomes_project 5 129856875 129925344 - MGP_C57BL6NJ_P0074495 protein_coding protein_coding MGP_C57BL6NJ_T0074496.1 MGP_C57BL6NJ_G0030463.1 mouse_genomes_project 5 129857005 129858080 - protein_coding processed_transcript MGP_C57BL6NJ_T0074497.1 MGP_C57BL6NJ_G0030463.1 mouse_genomes_project 5 129880140 129925344 - MGP_C57BL6NJ_P0074497 protein_coding protein_coding MGP_C57BL6NJ_T0074498.1 MGP_C57BL6NJ_G0030463.1 mouse_genomes_project 5 129882970 129925269 - MGP_C57BL6NJ_P0074498 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015232.1 MGP_C57BL6NJ_G0013277.1 mouse_genomes_project 5 1987091 1987923 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071225.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30694254 30697152 - MGP_C57BL6NJ_P0071225 Preb protein_coding protein_coding MGP_C57BL6NJ_T0071226.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30694623 30696498 - Preb protein_coding processed_transcript MGP_C57BL6NJ_T0071227.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30694749 30695440 - Preb protein_coding retained_intron MGP_C57BL6NJ_T0071228.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30694899 30698516 - MGP_C57BL6NJ_P0071228 Preb protein_coding protein_coding MGP_C57BL6NJ_T0071229.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30695188 30697075 - Preb protein_coding retained_intron MGP_C57BL6NJ_T0071230.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30696386 30697073 - Preb protein_coding retained_intron MGP_C57BL6NJ_T0071231.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30696534 30697637 - Preb protein_coding retained_intron MGP_C57BL6NJ_T0071232.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30697121 30698681 - Preb protein_coding processed_transcript MGP_C57BL6NJ_T0071233.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30697291 30697966 - Preb protein_coding processed_transcript MGP_C57BL6NJ_T0071234.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30697349 30698663 - Preb protein_coding retained_intron MGP_C57BL6NJ_T0071235.1 MGP_C57BL6NJ_G0029833.1 mouse_genomes_project 5 30697771 30698673 - Preb protein_coding processed_transcript MGP_C57BL6NJ_T0008341.1 MGP_C57BL6NJ_G0006797.1 mouse_genomes_project 5 76267365 76274311 + Gm34411 lincRNA lincRNA MGP_C57BL6NJ_T0001786.1 MGP_C57BL6NJ_G0001680.1 mouse_genomes_project 5 68498178 68502436 - TEC TEC MGP_C57BL6NJ_T0015254.1 MGP_C57BL6NJ_G0013299.1 mouse_genomes_project 5 12262711 12264014 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072883.1 MGP_C57BL6NJ_G0030115.1 mouse_genomes_project 5 91823869 92052998 - MGP_C57BL6NJ_P0072883 protein_coding protein_coding MGP_C57BL6NJ_T0073794.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117703214 117710142 - MGP_C57BL6NJ_P0073794 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073795.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117703214 117710142 - MGP_C57BL6NJ_P0073795 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073796.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117703214 117710205 - MGP_C57BL6NJ_P0073796 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073797.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117703214 117709513 - MGP_C57BL6NJ_P0073797 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073798.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117703215 117710161 - MGP_C57BL6NJ_P0073798 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073799.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117705083 117709692 - MGP_C57BL6NJ_P0073799 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0073800.1 MGP_C57BL6NJ_G0030322.1 mouse_genomes_project 5 117705092 117710137 - MGP_C57BL6NJ_P0073800 Pus1 protein_coding protein_coding MGP_C57BL6NJ_T0072915.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92391449 92406285 + MGP_C57BL6NJ_P0072915 Csn1s2a protein_coding protein_coding MGP_C57BL6NJ_T0072916.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92391449 92406285 + MGP_C57BL6NJ_P0072916 Csn1s2a protein_coding protein_coding MGP_C57BL6NJ_T0072917.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92391449 92406186 + MGP_C57BL6NJ_P0072917 Csn1s2a protein_coding protein_coding MGP_C57BL6NJ_T0072918.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92391463 92406186 + MGP_C57BL6NJ_P0072918 Csn1s2a protein_coding protein_coding MGP_C57BL6NJ_T0072919.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92391464 92397466 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0072920.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92392666 92395688 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0072921.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92394345 92397279 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0072922.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92396488 92399373 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0072923.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92399343 92406264 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0072924.1 MGP_C57BL6NJ_G0030122.1 mouse_genomes_project 5 92402647 92404584 + Csn1s2a protein_coding retained_intron MGP_C57BL6NJ_T0073451.1 MGP_C57BL6NJ_G0030252.1 mouse_genomes_project 5 111581836 111605106 - MGP_C57BL6NJ_P0073451 protein_coding protein_coding MGP_C57BL6NJ_T0001679.1 MGP_C57BL6NJ_G0001575.1 mouse_genomes_project 5 45478426 45480643 - TEC TEC MGP_C57BL6NJ_T0074107.1 MGP_C57BL6NJ_G0030384.1 mouse_genomes_project 5 122313974 122336580 - MGP_C57BL6NJ_P0074107 Hnf1a protein_coding protein_coding MGP_C57BL6NJ_T0074108.1 MGP_C57BL6NJ_G0030384.1 mouse_genomes_project 5 122315055 122336357 - MGP_C57BL6NJ_P0074108 Hnf1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074109.1 MGP_C57BL6NJ_G0030384.1 mouse_genomes_project 5 122317573 122336357 - MGP_C57BL6NJ_P0074109 Hnf1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074110.1 MGP_C57BL6NJ_G0030384.1 mouse_genomes_project 5 122334217 122336607 - Hnf1a protein_coding retained_intron MGP_C57BL6NJ_T0015244.1 MGP_C57BL6NJ_G0013289.1 mouse_genomes_project 5 6521495 6521690 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102269.1 MGP_C57BL6NJ_G0040256.1 mouse_genomes_project 5 76393637 76394501 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102270.1 MGP_C57BL6NJ_G0040256.1 mouse_genomes_project 5 76393682 76406651 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102271.1 MGP_C57BL6NJ_G0040256.1 mouse_genomes_project 5 76406350 76406928 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0075471.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145627537 145664294 + Srrm3 protein_coding retained_intron MGP_C57BL6NJ_T0075472.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145627544 145676168 + MGP_C57BL6NJ_P0075472 Srrm3 protein_coding protein_coding MGP_C57BL6NJ_T0075473.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145638710 145700811 + MGP_C57BL6NJ_P0075473 Srrm3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075474.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145638710 145702474 + MGP_C57BL6NJ_P0075474 Srrm3 protein_coding protein_coding MGP_C57BL6NJ_T0075475.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145678362 145681458 + Srrm3 protein_coding retained_intron MGP_C57BL6NJ_T0075476.1 MGP_C57BL6NJ_G0030622.1 mouse_genomes_project 5 145694314 145695907 + Srrm3 protein_coding retained_intron MGP_C57BL6NJ_T0075803.1 MGP_C57BL6NJ_G0030685.1 mouse_genomes_project 5 148310361 148313937 + MGP_C57BL6NJ_P0075803 Cops6 protein_coding protein_coding MGP_C57BL6NJ_T0075804.1 MGP_C57BL6NJ_G0030685.1 mouse_genomes_project 5 148310390 148313269 + MGP_C57BL6NJ_P0075804 Cops6 protein_coding protein_coding MGP_C57BL6NJ_T0075805.1 MGP_C57BL6NJ_G0030685.1 mouse_genomes_project 5 148310399 148311675 + Cops6 protein_coding retained_intron MGP_C57BL6NJ_T0075806.1 MGP_C57BL6NJ_G0030685.1 mouse_genomes_project 5 148310459 148313430 + Cops6 protein_coding retained_intron MGP_C57BL6NJ_T0075807.1 MGP_C57BL6NJ_G0030685.1 mouse_genomes_project 5 148312067 148313210 + MGP_C57BL6NJ_P0075807 Cops6 protein_coding protein_coding MGP_C57BL6NJ_T0074121.1 MGP_C57BL6NJ_G0030388.1 mouse_genomes_project 5 122507884 122520436 - MGP_C57BL6NJ_P0074121 Unc119b protein_coding protein_coding MGP_C57BL6NJ_T0074122.1 MGP_C57BL6NJ_G0030388.1 mouse_genomes_project 5 122510422 122512974 - Unc119b protein_coding retained_intron MGP_C57BL6NJ_T0074123.1 MGP_C57BL6NJ_G0030388.1 mouse_genomes_project 5 122515083 122520386 - Unc119b protein_coding retained_intron MGP_C57BL6NJ_T0008312.1 MGP_C57BL6NJ_G0006773.1 mouse_genomes_project 5 53299325 53318574 - C130083M11Rik lincRNA lincRNA MGP_C57BL6NJ_T0070968.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23834838 23842493 + MGP_C57BL6NJ_P0070968 Chpf2 protein_coding protein_coding MGP_C57BL6NJ_T0070969.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23834839 23837271 + Chpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0070970.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23834847 23840582 + MGP_C57BL6NJ_P0070970 Chpf2 protein_coding protein_coding MGP_C57BL6NJ_T0070971.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23834869 23836346 + Chpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0070972.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23834922 23839318 + MGP_C57BL6NJ_P0070972 Chpf2 protein_coding protein_coding MGP_C57BL6NJ_T0070976.1 MGP_C57BL6NJ_G0029781.1 mouse_genomes_project 5 23841584 23842654 + Chpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0008573.1 MGP_C57BL6NJ_G0006956.1 mouse_genomes_project 5 137540635 137541514 + Gm42500 lincRNA lincRNA MGP_C57BL6NJ_T0001851.1 MGP_C57BL6NJ_G0001744.1 mouse_genomes_project 5 97063160 97063718 - TEC TEC MGP_C57BL6NJ_T0070900.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23613916 23621232 + MGP_C57BL6NJ_P0070900 Abcb8 protein_coding protein_coding MGP_C57BL6NJ_T0070901.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23613929 23631064 + MGP_C57BL6NJ_P0070901 Abcb8 protein_coding protein_coding MGP_C57BL6NJ_T0070902.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23614408 23630955 + MGP_C57BL6NJ_P0070902 Abcb8 protein_coding protein_coding MGP_C57BL6NJ_T0070903.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23614649 23624987 + Abcb8 protein_coding processed_transcript MGP_C57BL6NJ_T0070904.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23614661 23621675 + Abcb8 protein_coding retained_intron MGP_C57BL6NJ_T0070905.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23621607 23630957 + MGP_C57BL6NJ_P0070905 Abcb8 protein_coding protein_coding MGP_C57BL6NJ_T0070906.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23623263 23627721 + Abcb8 protein_coding retained_intron MGP_C57BL6NJ_T0070907.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23626824 23630956 + Abcb8 protein_coding retained_intron MGP_C57BL6NJ_T0070908.1 MGP_C57BL6NJ_G0029770.1 mouse_genomes_project 5 23627417 23630934 + MGP_C57BL6NJ_P0070908 Abcb8 protein_coding protein_coding MGP_C57BL6NJ_T0015488.1 MGP_C57BL6NJ_G0013533.1 mouse_genomes_project 5 110868455 110869851 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072307.1 MGP_C57BL6NJ_G0030008.1 mouse_genomes_project 5 67706988 67711567 + Lias protein_coding retained_intron MGP_C57BL6NJ_T0072308.1 MGP_C57BL6NJ_G0030008.1 mouse_genomes_project 5 67707008 67710996 + Lias protein_coding retained_intron MGP_C57BL6NJ_T0072309.1 MGP_C57BL6NJ_G0030008.1 mouse_genomes_project 5 67707009 67713070 + MGP_C57BL6NJ_P0072309 Lias protein_coding protein_coding MGP_C57BL6NJ_T0072310.1 MGP_C57BL6NJ_G0030008.1 mouse_genomes_project 5 67707073 67724172 + MGP_C57BL6NJ_P0072310 Lias protein_coding protein_coding MGP_C57BL6NJ_T0072311.1 MGP_C57BL6NJ_G0030008.1 mouse_genomes_project 5 67712925 67715302 + Lias protein_coding retained_intron MGP_C57BL6NJ_T0015620.1 MGP_C57BL6NJ_G0013665.1 mouse_genomes_project 5 162987498 162988022 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073222.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102537911 102569356 - MGP_C57BL6NJ_P0073222 Paqr3 protein_coding protein_coding MGP_C57BL6NJ_T0073223.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102542562 102569333 - MGP_C57BL6NJ_P0073223 Paqr3 protein_coding protein_coding MGP_C57BL6NJ_T0073224.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102553691 102555531 - Paqr3 protein_coding retained_intron MGP_C57BL6NJ_T0073225.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102555283 102569203 - MGP_C57BL6NJ_P0073225 Paqr3 protein_coding protein_coding MGP_C57BL6NJ_T0073226.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102559901 102569356 - MGP_C57BL6NJ_P0073226 Paqr3 protein_coding protein_coding MGP_C57BL6NJ_T0073227.1 MGP_C57BL6NJ_G0030199.1 mouse_genomes_project 5 102562339 102569344 - Paqr3 protein_coding retained_intron MGP_C57BL6NJ_T0074427.1 MGP_C57BL6NJ_G0030451.1 mouse_genomes_project 5 129328984 129398244 - MGP_C57BL6NJ_P0074427 Ptpn11 protein_coding protein_coding MGP_C57BL6NJ_T0074428.1 MGP_C57BL6NJ_G0030451.1 mouse_genomes_project 5 129328986 129398214 - Ptpn11 protein_coding retained_intron MGP_C57BL6NJ_T0074429.1 MGP_C57BL6NJ_G0030451.1 mouse_genomes_project 5 129328992 129398176 - MGP_C57BL6NJ_P0074429 Ptpn11 protein_coding protein_coding MGP_C57BL6NJ_T0074430.1 MGP_C57BL6NJ_G0030451.1 mouse_genomes_project 5 129332291 129342094 - Ptpn11 protein_coding processed_transcript MGP_C57BL6NJ_T0100462.1 MGP_C57BL6NJ_G0038508.1 mouse_genomes_project 5 90205111 90205272 + Gm24626 snRNA snRNA MGP_C57BL6NJ_T0015307.1 MGP_C57BL6NJ_G0013352.1 mouse_genomes_project 5 27317360 27318050 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004868.1 MGP_C57BL6NJ_G0004207.1 mouse_genomes_project 5 69808839 69810130 - Gm42670 antisense antisense MGP_C57BL6NJ_T0015339.1 MGP_C57BL6NJ_G0013384.1 mouse_genomes_project 5 38937443 38937842 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076230.1 MGP_C57BL6NJ_G0030775.1 mouse_genomes_project 5 154794016 154800968 - MGP_C57BL6NJ_P0076230 Ocm protein_coding protein_coding MGP_C57BL6NJ_T0076231.1 MGP_C57BL6NJ_G0030775.1 mouse_genomes_project 5 154794288 154800075 - MGP_C57BL6NJ_P0076231 Ocm protein_coding protein_coding MGP_C57BL6NJ_T0076232.1 MGP_C57BL6NJ_G0030775.1 mouse_genomes_project 5 154798808 154801039 - MGP_C57BL6NJ_P0076232 Ocm protein_coding protein_coding MGP_C57BL6NJ_T0072157.1 MGP_C57BL6NJ_G0029979.1 mouse_genomes_project 5 53882652 53910217 + MGP_C57BL6NJ_P0072157 Pi4k2b protein_coding protein_coding MGP_C57BL6NJ_T0072158.1 MGP_C57BL6NJ_G0029979.1 mouse_genomes_project 5 53882684 53892551 + MGP_C57BL6NJ_P0072158 Pi4k2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072159.1 MGP_C57BL6NJ_G0029979.1 mouse_genomes_project 5 53882688 53910217 + MGP_C57BL6NJ_P0072159 Pi4k2b protein_coding protein_coding MGP_C57BL6NJ_T0072160.1 MGP_C57BL6NJ_G0029979.1 mouse_genomes_project 5 53895639 53898521 + Pi4k2b protein_coding retained_intron MGP_C57BL6NJ_T0004964.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127472677 127477491 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0004965.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127472680 127536128 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0004966.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127472772 127473307 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0004967.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127520442 127536205 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0004968.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127521079 127536416 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0004969.1 MGP_C57BL6NJ_G0004275.1 mouse_genomes_project 5 127526920 127588010 - Tbx3os1 antisense antisense MGP_C57BL6NJ_T0101735.1 MGP_C57BL6NJ_G0039781.1 mouse_genomes_project 5 60082825 60082959 + Gm22536 snoRNA snoRNA MGP_C57BL6NJ_T0004809.1 MGP_C57BL6NJ_G0004160.1 mouse_genomes_project 5 24147714 24151544 + Prkag2os2 antisense antisense MGP_C57BL6NJ_T0075944.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149626866 149635690 - MGP_C57BL6NJ_P0075944 Cox19 protein_coding protein_coding MGP_C57BL6NJ_T0075945.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149628499 149635634 - Cox19 protein_coding processed_transcript MGP_C57BL6NJ_T0075946.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149628817 149630253 - Cox19 protein_coding processed_transcript MGP_C57BL6NJ_T0075947.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149628898 149645742 - MGP_C57BL6NJ_P0075947 Cox19 protein_coding protein_coding MGP_C57BL6NJ_T0075948.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149628987 149635582 - MGP_C57BL6NJ_P0075948 Cox19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075949.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149632475 149635617 - Cox19 protein_coding retained_intron MGP_C57BL6NJ_T0075950.1 MGP_C57BL6NJ_G0030711.1 mouse_genomes_project 5 149632644 149635622 - Cox19 protein_coding retained_intron MGP_C57BL6NJ_T0004897.1 MGP_C57BL6NJ_G0004232.1 mouse_genomes_project 5 103703478 103706342 - A730035I17Rik antisense antisense MGP_C57BL6NJ_T0004898.1 MGP_C57BL6NJ_G0004232.1 mouse_genomes_project 5 103703494 103705568 - A730035I17Rik antisense antisense MGP_C57BL6NJ_T0004899.1 MGP_C57BL6NJ_G0004232.1 mouse_genomes_project 5 103704381 103706140 - A730035I17Rik antisense antisense MGP_C57BL6NJ_T0004900.1 MGP_C57BL6NJ_G0004232.1 mouse_genomes_project 5 103704804 103705571 - A730035I17Rik antisense antisense MGP_C57BL6NJ_T0004901.1 MGP_C57BL6NJ_G0004232.1 mouse_genomes_project 5 103705653 103706342 - A730035I17Rik antisense pseudogene MGP_C57BL6NJ_T0074035.1 MGP_C57BL6NJ_G0030370.1 mouse_genomes_project 5 121853564 121904253 + MGP_C57BL6NJ_P0074035 Fam222a protein_coding protein_coding MGP_C57BL6NJ_T0074036.1 MGP_C57BL6NJ_G0030370.1 mouse_genomes_project 5 121853565 121885720 + Fam222a protein_coding processed_transcript MGP_C57BL6NJ_T0072505.1 MGP_C57BL6NJ_G0030038.1 mouse_genomes_project 5 74305145 74420532 - protein_coding processed_transcript MGP_C57BL6NJ_T0072506.1 MGP_C57BL6NJ_G0030038.1 mouse_genomes_project 5 74305300 74305532 - protein_coding transcribed_processed_pseudogene MGP_C57BL6NJ_T0075989.1 MGP_C57BL6NJ_G0030721.1 mouse_genomes_project 5 150155877 150167019 + MGP_C57BL6NJ_P0075989 Mafk protein_coding protein_coding MGP_C57BL6NJ_T0075990.1 MGP_C57BL6NJ_G0030721.1 mouse_genomes_project 5 150155898 150163866 + Mafk protein_coding processed_transcript MGP_C57BL6NJ_T0075991.1 MGP_C57BL6NJ_G0030721.1 mouse_genomes_project 5 150161878 150166697 + MGP_C57BL6NJ_P0075991 Mafk protein_coding protein_coding MGP_C57BL6NJ_T0015582.1 MGP_C57BL6NJ_G0013627.1 mouse_genomes_project 5 153288548 153288777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074340.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127587313 127592474 + Tbx3 protein_coding retained_intron MGP_C57BL6NJ_T0074341.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127587313 127603245 + MGP_C57BL6NJ_P0074341 Tbx3 protein_coding protein_coding MGP_C57BL6NJ_T0074342.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127587506 127603408 + MGP_C57BL6NJ_P0074342 Tbx3 protein_coding protein_coding MGP_C57BL6NJ_T0074343.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127587662 127603408 + MGP_C57BL6NJ_P0074343 Tbx3 protein_coding protein_coding MGP_C57BL6NJ_T0074344.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127594255 127599438 + Tbx3 protein_coding retained_intron MGP_C57BL6NJ_T0074345.1 MGP_C57BL6NJ_G0030428.1 mouse_genomes_project 5 127599056 127599640 + Tbx3 protein_coding processed_transcript MGP_C57BL6NJ_T0101769.1 MGP_C57BL6NJ_G0039815.1 mouse_genomes_project 5 158016626 158016755 + Gm23202 snoRNA snoRNA MGP_C57BL6NJ_T0071782.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966202 36095718 + MGP_C57BL6NJ_P0071782 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071783.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966202 36096225 + MGP_C57BL6NJ_P0071783 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071784.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966246 36095401 + MGP_C57BL6NJ_P0071784 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071785.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966253 36096225 + MGP_C57BL6NJ_P0071785 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071786.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966253 36095717 + MGP_C57BL6NJ_P0071786 Ablim2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071787.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966288 36095718 + MGP_C57BL6NJ_P0071787 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071788.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 35966373 36094671 + MGP_C57BL6NJ_P0071788 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071789.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36022680 36053188 + MGP_C57BL6NJ_P0071789 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071790.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36022747 36094671 + MGP_C57BL6NJ_P0071790 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071791.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36022761 36043094 + MGP_C57BL6NJ_P0071791 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071792.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36036404 36086136 + MGP_C57BL6NJ_P0071792 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071793.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36036435 36051516 + Ablim2 protein_coding retained_intron MGP_C57BL6NJ_T0071794.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36036435 36068654 + MGP_C57BL6NJ_P0071794 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071795.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36051337 36068981 + MGP_C57BL6NJ_P0071795 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0071796.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36059570 36079749 + Ablim2 protein_coding retained_intron MGP_C57BL6NJ_T0071797.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36067860 36068981 + Ablim2 protein_coding retained_intron MGP_C57BL6NJ_T0071798.1 MGP_C57BL6NJ_G0029915.1 mouse_genomes_project 5 36068688 36094771 + MGP_C57BL6NJ_P0071798 Ablim2 protein_coding protein_coding MGP_C57BL6NJ_T0001990.1 MGP_C57BL6NJ_G0001882.1 mouse_genomes_project 5 141022260 141022960 - TEC TEC MGP_C57BL6NJ_T0076332.1 MGP_C57BL6NJ_G0030795.1 mouse_genomes_project 5 156156961 156172523 + MGP_C57BL6NJ_P0076332 Zfp655 protein_coding protein_coding MGP_C57BL6NJ_T0076333.1 MGP_C57BL6NJ_G0030795.1 mouse_genomes_project 5 156156993 156172522 + MGP_C57BL6NJ_P0076333 Zfp655 protein_coding protein_coding MGP_C57BL6NJ_T0076334.1 MGP_C57BL6NJ_G0030795.1 mouse_genomes_project 5 156156994 156162633 + MGP_C57BL6NJ_P0076334 Zfp655 protein_coding protein_coding MGP_C57BL6NJ_T0076335.1 MGP_C57BL6NJ_G0030795.1 mouse_genomes_project 5 156156995 156162503 + MGP_C57BL6NJ_P0076335 Zfp655 protein_coding protein_coding MGP_C57BL6NJ_T0076336.1 MGP_C57BL6NJ_G0030795.1 mouse_genomes_project 5 156158697 156162467 + MGP_C57BL6NJ_P0076336 Zfp655 protein_coding protein_coding MGP_C57BL6NJ_T0071974.1 MGP_C57BL6NJ_G0029948.1 mouse_genomes_project 5 42205132 42324352 - MGP_C57BL6NJ_P0071974 Rab28 protein_coding protein_coding MGP_C57BL6NJ_T0071975.1 MGP_C57BL6NJ_G0029948.1 mouse_genomes_project 5 42205132 42324385 - MGP_C57BL6NJ_P0071975 Rab28 protein_coding protein_coding MGP_C57BL6NJ_T0071976.1 MGP_C57BL6NJ_G0029948.1 mouse_genomes_project 5 42205133 42324388 - MGP_C57BL6NJ_P0071976 Rab28 protein_coding protein_coding MGP_C57BL6NJ_T0071977.1 MGP_C57BL6NJ_G0029948.1 mouse_genomes_project 5 42205889 42207659 - Rab28 protein_coding retained_intron MGP_C57BL6NJ_T0071978.1 MGP_C57BL6NJ_G0029948.1 mouse_genomes_project 5 42206383 42209274 - Rab28 protein_coding retained_intron MGP_C57BL6NJ_T0072873.1 MGP_C57BL6NJ_G0030108.1 mouse_genomes_project 5 91494115 91519206 + MGP_C57BL6NJ_P0072873 Ugt2b35 protein_coding protein_coding MGP_C57BL6NJ_T0004921.1 MGP_C57BL6NJ_G0004243.1 mouse_genomes_project 5 110113659 110120468 + Gm26703 antisense antisense MGP_C57BL6NJ_T0004922.1 MGP_C57BL6NJ_G0004243.1 mouse_genomes_project 5 110113733 110115369 + Gm26703 antisense antisense MGP_C57BL6NJ_T0004923.1 MGP_C57BL6NJ_G0004243.1 mouse_genomes_project 5 110118332 110124132 + Gm26703 antisense antisense MGP_C57BL6NJ_T0015404.1 MGP_C57BL6NJ_G0013449.1 mouse_genomes_project 5 70565697 70566165 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076250.1 MGP_C57BL6NJ_G0030780.1 mouse_genomes_project 5 155069624 155170549 - MGP_C57BL6NJ_P0076250 Baiap2l1 protein_coding protein_coding MGP_C57BL6NJ_T0076251.1 MGP_C57BL6NJ_G0030780.1 mouse_genomes_project 5 155087134 155094058 - Baiap2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0015454.1 MGP_C57BL6NJ_G0013499.1 mouse_genomes_project 5 94184264 94185090 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072762.1 MGP_C57BL6NJ_G0030083.1 mouse_genomes_project 5 80311745 80317160 + MGP_C57BL6NJ_P0072762 Arl9 protein_coding protein_coding MGP_C57BL6NJ_T0072763.1 MGP_C57BL6NJ_G0030083.1 mouse_genomes_project 5 80314162 80318288 + MGP_C57BL6NJ_P0072763 Arl9 protein_coding protein_coding MGP_C57BL6NJ_T0015453.1 MGP_C57BL6NJ_G0013498.1 mouse_genomes_project 5 93503427 93504817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073614.1 MGP_C57BL6NJ_G0030284.1 mouse_genomes_project 5 114997853 115044959 + MGP_C57BL6NJ_P0073614 Pde6b protein_coding protein_coding MGP_C57BL6NJ_T0073615.1 MGP_C57BL6NJ_G0030284.1 mouse_genomes_project 5 114997888 115044883 + Pde6b protein_coding retained_intron MGP_C57BL6NJ_T0073616.1 MGP_C57BL6NJ_G0030284.1 mouse_genomes_project 5 115043592 115045613 + Pde6b protein_coding retained_intron MGP_C57BL6NJ_T0015364.1 MGP_C57BL6NJ_G0013409.1 mouse_genomes_project 5 55847640 55860568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074282.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 124977996 125020441 + MGP_C57BL6NJ_P0074282 Vsig10 protein_coding protein_coding MGP_C57BL6NJ_T0074283.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 124979322 125018547 + MGP_C57BL6NJ_P0074283 Vsig10 protein_coding protein_coding MGP_C57BL6NJ_T0074284.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 124979348 125004484 + Vsig10 protein_coding retained_intron MGP_C57BL6NJ_T0074285.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 124979391 124986544 + Vsig10 protein_coding retained_intron MGP_C57BL6NJ_T0074286.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 124984989 125020433 + Vsig10 protein_coding processed_transcript MGP_C57BL6NJ_T0074287.1 MGP_C57BL6NJ_G0030416.1 mouse_genomes_project 5 125015345 125020441 + Vsig10 protein_coding processed_transcript MGP_C57BL6NJ_T0015445.1 MGP_C57BL6NJ_G0013490.1 mouse_genomes_project 5 92181756 92183671 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015378.1 MGP_C57BL6NJ_G0013423.1 mouse_genomes_project 5 60811694 60812648 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001969.1 MGP_C57BL6NJ_G0001861.1 mouse_genomes_project 5 136292282 136293365 + TEC TEC MGP_C57BL6NJ_T0008654.1 MGP_C57BL6NJ_G0007015.1 mouse_genomes_project 5 161447354 161450016 - Gm43450 lincRNA lincRNA MGP_C57BL6NJ_T0015388.1 MGP_C57BL6NJ_G0013433.1 mouse_genomes_project 5 63645842 63646311 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001692.1 MGP_C57BL6NJ_G0001588.1 mouse_genomes_project 5 49205798 49207552 + TEC TEC MGP_C57BL6NJ_T0070613.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5901565 5935833 + MGP_C57BL6NJ_P0070613 Slc25a40 protein_coding protein_coding MGP_C57BL6NJ_T0070614.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5901573 5907350 + Slc25a40 protein_coding retained_intron MGP_C57BL6NJ_T0070615.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5901573 5935825 + MGP_C57BL6NJ_P0070615 Slc25a40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070616.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5901588 5935790 + Slc25a40 protein_coding retained_intron MGP_C57BL6NJ_T0070617.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5901614 5935772 + MGP_C57BL6NJ_P0070617 Slc25a40 protein_coding protein_coding MGP_C57BL6NJ_T0070618.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5903547 5923205 + MGP_C57BL6NJ_P0070618 Slc25a40 protein_coding protein_coding MGP_C57BL6NJ_T0070619.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5910833 5911255 + Slc25a40 protein_coding retained_intron MGP_C57BL6NJ_T0070620.1 MGP_C57BL6NJ_G0029714.1 mouse_genomes_project 5 5924470 5930621 + Slc25a40 protein_coding retained_intron MGP_C57BL6NJ_T0071006.1 MGP_C57BL6NJ_G0029788.1 mouse_genomes_project 5 24489317 24530394 + MGP_C57BL6NJ_P0071006 Galntl5 protein_coding protein_coding MGP_C57BL6NJ_T0071007.1 MGP_C57BL6NJ_G0029788.1 mouse_genomes_project 5 24489359 24530392 + MGP_C57BL6NJ_P0071007 Galntl5 protein_coding protein_coding MGP_C57BL6NJ_T0101733.1 MGP_C57BL6NJ_G0039779.1 mouse_genomes_project 5 58607092 58607215 + Gm24902 snoRNA snoRNA MGP_C57BL6NJ_T0072148.1 MGP_C57BL6NJ_G0029976.1 mouse_genomes_project 5 53483567 53584815 - MGP_C57BL6NJ_P0072148 Ccdc149 protein_coding protein_coding MGP_C57BL6NJ_T0072149.1 MGP_C57BL6NJ_G0029976.1 mouse_genomes_project 5 53483573 53584938 - MGP_C57BL6NJ_P0072149 Ccdc149 protein_coding protein_coding MGP_C57BL6NJ_T0010939.1 MGP_C57BL6NJ_G0009024.1 mouse_genomes_project 5 79137966 79138067 + Gm25374 miRNA miRNA MGP_C57BL6NJ_T0004962.1 MGP_C57BL6NJ_G0004273.1 mouse_genomes_project 5 125662608 125666402 - Gm26995 antisense antisense MGP_C57BL6NJ_T0076608.1 MGP_C57BL6NJ_G0030854.1 mouse_genomes_project 5 163258432 163282847 - MGP_C57BL6NJ_P0076608 Vmn2r18 protein_coding protein_coding MGP_C57BL6NJ_T0072716.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 79920545 79922389 + MGP_C57BL6NJ_P0072716 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072717.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 79921716 80115506 + MGP_C57BL6NJ_P0072717 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072718.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 79921718 79923142 + C530008M17Rik protein_coding processed_transcript MGP_C57BL6NJ_T0072719.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 79921754 80059764 + C530008M17Rik protein_coding processed_transcript MGP_C57BL6NJ_T0072720.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80019665 80159949 + MGP_C57BL6NJ_P0072720 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072721.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80069645 80117214 + MGP_C57BL6NJ_P0072721 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072722.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80115223 80160164 + MGP_C57BL6NJ_P0072722 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072723.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80115223 80160173 + MGP_C57BL6NJ_P0072723 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072724.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80115243 80117216 + MGP_C57BL6NJ_P0072724 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072725.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80140840 80153110 + C530008M17Rik protein_coding retained_intron MGP_C57BL6NJ_T0072726.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80152719 80155036 + MGP_C57BL6NJ_P0072726 C530008M17Rik protein_coding protein_coding MGP_C57BL6NJ_T0072727.1 MGP_C57BL6NJ_G0030078.1 mouse_genomes_project 5 80155806 80157293 + C530008M17Rik protein_coding processed_transcript MGP_C57BL6NJ_T0002027.1 MGP_C57BL6NJ_G0001918.1 mouse_genomes_project 5 148963905 148964696 + TEC TEC MGP_C57BL6NJ_T0008486.1 MGP_C57BL6NJ_G0006898.1 mouse_genomes_project 5 119742790 119745532 + Gm42864 lincRNA lincRNA MGP_C57BL6NJ_T0101763.1 MGP_C57BL6NJ_G0039809.1 mouse_genomes_project 5 126029586 126029718 + Gm25076 snoRNA snoRNA MGP_C57BL6NJ_T0008452.1 MGP_C57BL6NJ_G0006881.1 mouse_genomes_project 5 117149312 117161243 + Gm26718 lincRNA lincRNA MGP_C57BL6NJ_T0073883.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120027359 120142225 - MGP_C57BL6NJ_P0073883 Adrbk2 protein_coding protein_coding MGP_C57BL6NJ_T0073884.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120029476 120142225 - MGP_C57BL6NJ_P0073884 Adrbk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073885.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120032987 120041253 - Adrbk2 protein_coding retained_intron MGP_C57BL6NJ_T0073886.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120034622 120142502 - MGP_C57BL6NJ_P0073886 Adrbk2 protein_coding protein_coding MGP_C57BL6NJ_T0073887.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120036939 120045635 - Adrbk2 protein_coding retained_intron MGP_C57BL6NJ_T0073888.1 MGP_C57BL6NJ_G0030341.1 mouse_genomes_project 5 120081342 120142214 - MGP_C57BL6NJ_P0073888 Adrbk2 protein_coding protein_coding MGP_C57BL6NJ_T0071762.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784120 35816205 + MGP_C57BL6NJ_P0071762 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071763.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784131 35815011 + MGP_C57BL6NJ_P0071763 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071764.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784158 35789851 + MGP_C57BL6NJ_P0071764 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071765.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784159 35817756 + MGP_C57BL6NJ_P0071765 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071766.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784172 35788546 + Acox3 protein_coding retained_intron MGP_C57BL6NJ_T0071767.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784182 35814280 + MGP_C57BL6NJ_P0071767 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071768.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35784603 35814273 + MGP_C57BL6NJ_P0071768 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071769.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35804033 35810738 + MGP_C57BL6NJ_P0071769 Acox3 protein_coding protein_coding MGP_C57BL6NJ_T0071770.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35809368 35812323 + Acox3 protein_coding retained_intron MGP_C57BL6NJ_T0071771.1 MGP_C57BL6NJ_G0029912.1 mouse_genomes_project 5 35812502 35814291 + Acox3 protein_coding retained_intron MGP_C57BL6NJ_T0074582.1 MGP_C57BL6NJ_G0030474.1 mouse_genomes_project 5 130694424 130722724 - MGP_C57BL6NJ_P0074582 Tctn1 protein_coding protein_coding MGP_C57BL6NJ_T0074583.1 MGP_C57BL6NJ_G0030474.1 mouse_genomes_project 5 130699566 130722724 - MGP_C57BL6NJ_P0074583 Tctn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074584.1 MGP_C57BL6NJ_G0030474.1 mouse_genomes_project 5 130703850 130709946 - Tctn1 protein_coding processed_transcript MGP_C57BL6NJ_T0074585.1 MGP_C57BL6NJ_G0030474.1 mouse_genomes_project 5 130706719 130712830 - Tctn1 protein_coding retained_intron MGP_C57BL6NJ_T0074586.1 MGP_C57BL6NJ_G0030474.1 mouse_genomes_project 5 130710591 130722679 - Tctn1 protein_coding retained_intron MGP_C57BL6NJ_T0010905.1 MGP_C57BL6NJ_G0008990.1 mouse_genomes_project 5 732327 732444 + Gm26238 miRNA miRNA MGP_C57BL6NJ_T0012111.1 MGP_C57BL6NJ_G0010162.1 mouse_genomes_project 5 97257754 97263717 - MGP_C57BL6NJ_P0012111 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012112.1 MGP_C57BL6NJ_G0010162.1 mouse_genomes_project 5 97257757 97261488 - MGP_C57BL6NJ_P0012112 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0073253.1 MGP_C57BL6NJ_G0030210.1 mouse_genomes_project 5 104915365 105388365 - MGP_C57BL6NJ_P0073253 protein_coding protein_coding MGP_C57BL6NJ_T0073254.1 MGP_C57BL6NJ_G0030210.1 mouse_genomes_project 5 105001569 105388382 - MGP_C57BL6NJ_P0073254 protein_coding protein_coding MGP_C57BL6NJ_T0073255.1 MGP_C57BL6NJ_G0030210.1 mouse_genomes_project 5 105202116 105388385 - protein_coding retained_intron MGP_C57BL6NJ_T0073256.1 MGP_C57BL6NJ_G0030210.1 mouse_genomes_project 5 105338524 105388141 - protein_coding processed_transcript MGP_C57BL6NJ_T0073257.1 MGP_C57BL6NJ_G0030210.1 mouse_genomes_project 5 105382774 105388376 - MGP_C57BL6NJ_P0073257 protein_coding protein_coding MGP_C57BL6NJ_T0076573.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162225604 162249723 - MGP_C57BL6NJ_P0076573 N4bp2l1 protein_coding protein_coding MGP_C57BL6NJ_T0076574.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162225607 162230952 - MGP_C57BL6NJ_P0076574 N4bp2l1 protein_coding protein_coding MGP_C57BL6NJ_T0076575.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162226625 162249660 - MGP_C57BL6NJ_P0076575 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076576.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162227960 162252386 - MGP_C57BL6NJ_P0076576 N4bp2l1 protein_coding protein_coding MGP_C57BL6NJ_T0076577.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162246949 162249726 - MGP_C57BL6NJ_P0076577 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076578.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162246952 162249698 - MGP_C57BL6NJ_P0076578 N4bp2l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076579.1 MGP_C57BL6NJ_G0030848.1 mouse_genomes_project 5 162247640 162248967 - N4bp2l1 protein_coding retained_intron MGP_C57BL6NJ_T0001594.1 MGP_C57BL6NJ_G0001493.1 mouse_genomes_project 5 13077454 13081313 + TEC TEC MGP_C57BL6NJ_T0015601.1 MGP_C57BL6NJ_G0013646.1 mouse_genomes_project 5 157121505 157121706 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073211.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102202929 102233574 + MGP_C57BL6NJ_P0073211 Anxa3 protein_coding protein_coding MGP_C57BL6NJ_T0073212.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102202975 102265045 + MGP_C57BL6NJ_P0073212 Anxa3 protein_coding protein_coding MGP_C57BL6NJ_T0073213.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102203031 102242931 + MGP_C57BL6NJ_P0073213 Anxa3 protein_coding protein_coding MGP_C57BL6NJ_T0073214.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102203094 102243872 + MGP_C57BL6NJ_P0073214 Anxa3 protein_coding protein_coding MGP_C57BL6NJ_T0073215.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102228363 102252854 + Anxa3 protein_coding retained_intron MGP_C57BL6NJ_T0073216.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102233465 102257418 + Anxa3 protein_coding retained_intron MGP_C57BL6NJ_T0073217.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102245893 102248436 + Anxa3 protein_coding retained_intron MGP_C57BL6NJ_T0073218.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102248030 102264761 + Anxa3 protein_coding retained_intron MGP_C57BL6NJ_T0073219.1 MGP_C57BL6NJ_G0030197.1 mouse_genomes_project 5 102261076 102264939 + MGP_C57BL6NJ_P0073219 Anxa3 protein_coding protein_coding MGP_C57BL6NJ_T0005006.1 MGP_C57BL6NJ_G0004302.1 mouse_genomes_project 5 139488719 139491334 - Gm42469 antisense antisense MGP_C57BL6NJ_T0074680.1 MGP_C57BL6NJ_G0030488.1 mouse_genomes_project 5 131390410 131415213 + MGP_C57BL6NJ_P0074680 Rnf34 protein_coding protein_coding MGP_C57BL6NJ_T0074681.1 MGP_C57BL6NJ_G0030488.1 mouse_genomes_project 5 131390519 131407236 + MGP_C57BL6NJ_P0074681 Rnf34 protein_coding protein_coding MGP_C57BL6NJ_T0004804.1 MGP_C57BL6NJ_G0004156.1 mouse_genomes_project 5 22296291 22320492 - Gm42948 antisense antisense MGP_C57BL6NJ_T0074418.1 MGP_C57BL6NJ_G0030447.1 mouse_genomes_project 5 128952965 128964086 + MGP_C57BL6NJ_P0074418 protein_coding protein_coding MGP_C57BL6NJ_T0074419.1 MGP_C57BL6NJ_G0030447.1 mouse_genomes_project 5 128953979 128963962 + MGP_C57BL6NJ_P0074419 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074488.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129824127 129853925 - MGP_C57BL6NJ_P0074488 Aldh2 protein_coding protein_coding MGP_C57BL6NJ_T0074489.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129825978 129829283 - Aldh2 protein_coding retained_intron MGP_C57BL6NJ_T0074490.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129825979 129837762 - MGP_C57BL6NJ_P0074490 Aldh2 protein_coding protein_coding MGP_C57BL6NJ_T0074491.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129826057 129830934 - MGP_C57BL6NJ_P0074491 Aldh2 protein_coding protein_coding MGP_C57BL6NJ_T0074492.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129828405 129853681 - MGP_C57BL6NJ_P0074492 Aldh2 protein_coding protein_coding MGP_C57BL6NJ_T0074493.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129829567 129833223 - Aldh2 protein_coding retained_intron MGP_C57BL6NJ_T0074494.1 MGP_C57BL6NJ_G0030462.1 mouse_genomes_project 5 129834552 129853683 - MGP_C57BL6NJ_P0074494 Aldh2 protein_coding protein_coding MGP_C57BL6NJ_T0008488.1 MGP_C57BL6NJ_G0006900.1 mouse_genomes_project 5 120282087 120294630 + Gm43095 lincRNA lincRNA MGP_C57BL6NJ_T0001731.1 MGP_C57BL6NJ_G0001626.1 mouse_genomes_project 5 53235189 53239439 - TEC TEC MGP_C57BL6NJ_T0015464.1 MGP_C57BL6NJ_G0013509.1 mouse_genomes_project 5 97954801 97955375 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010916.1 MGP_C57BL6NJ_G0009001.1 mouse_genomes_project 5 24474405 24474498 - Gm26051 miRNA miRNA MGP_C57BL6NJ_T0001891.1 MGP_C57BL6NJ_G0001784.1 mouse_genomes_project 5 115525313 115528336 + TEC TEC MGP_C57BL6NJ_T0015506.1 MGP_C57BL6NJ_G0013551.1 mouse_genomes_project 5 114806747 114807223 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001767.1 MGP_C57BL6NJ_G0001661.1 mouse_genomes_project 5 67721134 67721901 + TEC TEC MGP_C57BL6NJ_T0070909.1 MGP_C57BL6NJ_G0029771.1 mouse_genomes_project 5 23634401 23638844 + MGP_C57BL6NJ_P0070909 Asic3 protein_coding protein_coding MGP_C57BL6NJ_T0070910.1 MGP_C57BL6NJ_G0029771.1 mouse_genomes_project 5 23634460 23638844 + Asic3 protein_coding retained_intron MGP_C57BL6NJ_T0070911.1 MGP_C57BL6NJ_G0029771.1 mouse_genomes_project 5 23634721 23638756 + MGP_C57BL6NJ_P0070911 Asic3 protein_coding protein_coding MGP_C57BL6NJ_T0070912.1 MGP_C57BL6NJ_G0029771.1 mouse_genomes_project 5 23636749 23638844 + Asic3 protein_coding retained_intron MGP_C57BL6NJ_T0070913.1 MGP_C57BL6NJ_G0029771.1 mouse_genomes_project 5 23637586 23638845 + MGP_C57BL6NJ_P0070913 Asic3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008253.1 MGP_C57BL6NJ_G0006731.1 mouse_genomes_project 5 27520876 27573272 - Gm26608 lincRNA lincRNA MGP_C57BL6NJ_T0008254.1 MGP_C57BL6NJ_G0006731.1 mouse_genomes_project 5 27558391 27559900 - Gm26608 lincRNA lincRNA MGP_C57BL6NJ_T0002006.1 MGP_C57BL6NJ_G0001898.1 mouse_genomes_project 5 141863575 141864850 - TEC TEC MGP_C57BL6NJ_T0015452.1 MGP_C57BL6NJ_G0013497.1 mouse_genomes_project 5 93463718 93465348 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075903.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149276322 149395662 - MGP_C57BL6NJ_P0075903 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075904.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149277679 149282812 - Prkar1b protein_coding processed_transcript MGP_C57BL6NJ_T0075905.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149302008 149393708 - MGP_C57BL6NJ_P0075905 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075906.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149310219 149396060 - MGP_C57BL6NJ_P0075906 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075907.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149325515 149375706 - MGP_C57BL6NJ_P0075907 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075908.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149371702 149396477 - MGP_C57BL6NJ_P0075908 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075909.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149371729 149415760 - MGP_C57BL6NJ_P0075909 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075910.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149371795 149396284 - MGP_C57BL6NJ_P0075910 Prkar1b protein_coding protein_coding MGP_C57BL6NJ_T0075911.1 MGP_C57BL6NJ_G0030706.1 mouse_genomes_project 5 149413812 149415716 - Prkar1b protein_coding processed_transcript MGP_C57BL6NJ_T0103199.1 MGP_C57BL6NJ_G0040993.1 mouse_genomes_project 5 91544088 91545151 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010910.1 MGP_C57BL6NJ_G0008995.1 mouse_genomes_project 5 5670095 5670211 - Gm24196 miRNA miRNA MGP_C57BL6NJ_T0071275.1 MGP_C57BL6NJ_G0029840.1 mouse_genomes_project 5 30904884 30927293 + MGP_C57BL6NJ_P0071275 Trim54 protein_coding protein_coding MGP_C57BL6NJ_T0071276.1 MGP_C57BL6NJ_G0029840.1 mouse_genomes_project 5 30904906 30927295 + MGP_C57BL6NJ_P0071276 Trim54 protein_coding protein_coding MGP_C57BL6NJ_T0015446.1 MGP_C57BL6NJ_G0013491.1 mouse_genomes_project 5 92680791 92682649 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074602.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130844318 130858327 + MGP_C57BL6NJ_P0074602 Gpn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074603.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130844893 130858388 + MGP_C57BL6NJ_P0074603 Gpn3 protein_coding protein_coding MGP_C57BL6NJ_T0074604.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130844969 130854213 + Gpn3 protein_coding retained_intron MGP_C57BL6NJ_T0074605.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130846433 130857785 + MGP_C57BL6NJ_P0074605 Gpn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074606.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130856753 130858388 + MGP_C57BL6NJ_P0074606 Gpn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074607.1 MGP_C57BL6NJ_G0030479.1 mouse_genomes_project 5 130856778 130858018 + MGP_C57BL6NJ_P0074607 Gpn3 protein_coding protein_coding MGP_C57BL6NJ_T0004928.1 MGP_C57BL6NJ_G0004248.1 mouse_genomes_project 5 115437907 115442049 + 1700047L14Rik antisense antisense MGP_C57BL6NJ_T0099481.1 MGP_C57BL6NJ_G0037537.1 mouse_genomes_project 5 140476806 140481497 - Gm43166 sense_intronic sense_intronic MGP_C57BL6NJ_T0075671.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147553755 147558857 - MGP_C57BL6NJ_P0075671 Gnb2 protein_coding protein_coding MGP_C57BL6NJ_T0075672.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147553757 147554550 - Gnb2 protein_coding retained_intron MGP_C57BL6NJ_T0075673.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147553786 147557314 - MGP_C57BL6NJ_P0075673 Gnb2 protein_coding protein_coding MGP_C57BL6NJ_T0075674.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554132 147558763 - MGP_C57BL6NJ_P0075674 Gnb2 protein_coding protein_coding MGP_C57BL6NJ_T0075675.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554194 147556529 - Gnb2 protein_coding retained_intron MGP_C57BL6NJ_T0075676.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554401 147555492 - Gnb2 protein_coding retained_intron MGP_C57BL6NJ_T0075677.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554425 147555450 - Gnb2 protein_coding retained_intron MGP_C57BL6NJ_T0075678.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554502 147555406 - Gnb2 protein_coding retained_intron MGP_C57BL6NJ_T0075679.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554649 147556668 - MGP_C57BL6NJ_P0075679 Gnb2 protein_coding protein_coding MGP_C57BL6NJ_T0075680.1 MGP_C57BL6NJ_G0030660.1 mouse_genomes_project 5 147554767 147557508 - MGP_C57BL6NJ_P0075680 Gnb2 protein_coding protein_coding MGP_C57BL6NJ_T0001938.1 MGP_C57BL6NJ_G0001831.1 mouse_genomes_project 5 129646503 129648360 + TEC TEC MGP_C57BL6NJ_T0001972.1 MGP_C57BL6NJ_G0001864.1 mouse_genomes_project 5 137383679 137386920 - TEC TEC MGP_C57BL6NJ_T0100500.1 MGP_C57BL6NJ_G0038546.1 mouse_genomes_project 5 154786744 154786848 + Gm24311 snRNA snRNA MGP_C57BL6NJ_T0074587.1 MGP_C57BL6NJ_G0030475.1 mouse_genomes_project 5 130747101 130787057 + MGP_C57BL6NJ_P0074587 Pptc7 protein_coding protein_coding MGP_C57BL6NJ_T0073834.1 MGP_C57BL6NJ_G0030329.1 mouse_genomes_project 5 118739194 118739845 + MGP_C57BL6NJ_P0073834 Gm26897 protein_coding protein_coding MGP_C57BL6NJ_T0015292.1 MGP_C57BL6NJ_G0013337.1 mouse_genomes_project 5 23437492 23438882 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072770.1 MGP_C57BL6NJ_G0030086.1 mouse_genomes_project 5 80545416 80551231 - MGP_C57BL6NJ_P0072770 Spink2 protein_coding protein_coding MGP_C57BL6NJ_T0072771.1 MGP_C57BL6NJ_G0030086.1 mouse_genomes_project 5 80545416 80551198 - MGP_C57BL6NJ_P0072771 Spink2 protein_coding protein_coding MGP_C57BL6NJ_T0072772.1 MGP_C57BL6NJ_G0030086.1 mouse_genomes_project 5 80545421 80550965 - MGP_C57BL6NJ_P0072772 Spink2 protein_coding protein_coding MGP_C57BL6NJ_T0071799.1 MGP_C57BL6NJ_G0029916.1 mouse_genomes_project 5 36104388 36215553 + MGP_C57BL6NJ_P0071799 Afap1 protein_coding protein_coding MGP_C57BL6NJ_T0071800.1 MGP_C57BL6NJ_G0029916.1 mouse_genomes_project 5 36104534 36116362 + Afap1 protein_coding processed_transcript MGP_C57BL6NJ_T0071801.1 MGP_C57BL6NJ_G0029916.1 mouse_genomes_project 5 36123750 36207654 + MGP_C57BL6NJ_P0071801 Afap1 protein_coding protein_coding MGP_C57BL6NJ_T0071802.1 MGP_C57BL6NJ_G0029916.1 mouse_genomes_project 5 36143954 36215510 + MGP_C57BL6NJ_P0071802 Afap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071803.1 MGP_C57BL6NJ_G0029916.1 mouse_genomes_project 5 36198607 36202852 + Afap1 protein_coding retained_intron MGP_C57BL6NJ_T0015413.1 MGP_C57BL6NJ_G0013458.1 mouse_genomes_project 5 75661256 75661566 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001706.1 MGP_C57BL6NJ_G0001601.1 mouse_genomes_project 5 49933788 49936332 - TEC TEC MGP_C57BL6NJ_T0100479.1 MGP_C57BL6NJ_G0038525.1 mouse_genomes_project 5 117684978 117685085 + Gm22583 snRNA snRNA MGP_C57BL6NJ_T0075669.1 MGP_C57BL6NJ_G0030659.1 mouse_genomes_project 5 147543067 147553564 + MGP_C57BL6NJ_P0075669 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0075670.1 MGP_C57BL6NJ_G0030659.1 mouse_genomes_project 5 147544181 147546010 + MGP_C57BL6NJ_P0075670 protein_coding protein_coding MGP_C57BL6NJ_T0001658.1 MGP_C57BL6NJ_G0001554.1 mouse_genomes_project 5 43799021 43803518 - TEC TEC MGP_C57BL6NJ_T0008246.1 MGP_C57BL6NJ_G0006728.1 mouse_genomes_project 5 25012092 25012442 - lincRNA lincRNA MGP_C57BL6NJ_T0008248.1 MGP_C57BL6NJ_G0006728.1 mouse_genomes_project 5 25012099 25015102 - lincRNA lincRNA MGP_C57BL6NJ_T0071750.1 MGP_C57BL6NJ_G0029907.1 mouse_genomes_project 5 35253635 35270102 - MGP_C57BL6NJ_P0071750 Lrpap1 protein_coding protein_coding MGP_C57BL6NJ_T0071751.1 MGP_C57BL6NJ_G0029907.1 mouse_genomes_project 5 35255203 35266850 - MGP_C57BL6NJ_P0071751 Lrpap1 protein_coding protein_coding MGP_C57BL6NJ_T0071752.1 MGP_C57BL6NJ_G0029907.1 mouse_genomes_project 5 35255429 35270025 - Lrpap1 protein_coding retained_intron MGP_C57BL6NJ_T0071753.1 MGP_C57BL6NJ_G0029907.1 mouse_genomes_project 5 35266463 35270032 - Lrpap1 protein_coding retained_intron MGP_C57BL6NJ_T0071754.1 MGP_C57BL6NJ_G0029907.1 mouse_genomes_project 5 35266844 35268876 - Lrpap1 protein_coding processed_transcript MGP_C57BL6NJ_T0015283.1 MGP_C57BL6NJ_G0013328.1 mouse_genomes_project 5 21760513 21763542 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004913.1 MGP_C57BL6NJ_G0004240.1 mouse_genomes_project 5 107683265 107694379 + Gm20548 antisense antisense MGP_C57BL6NJ_T0004914.1 MGP_C57BL6NJ_G0004240.1 mouse_genomes_project 5 107683291 107692457 + Gm20548 antisense antisense MGP_C57BL6NJ_T0004915.1 MGP_C57BL6NJ_G0004240.1 mouse_genomes_project 5 107683301 107692420 + Gm20548 antisense antisense MGP_C57BL6NJ_T0004916.1 MGP_C57BL6NJ_G0004240.1 mouse_genomes_project 5 107683307 107694590 + Gm20548 antisense antisense MGP_C57BL6NJ_T0004917.1 MGP_C57BL6NJ_G0004240.1 mouse_genomes_project 5 107688334 107692512 + Gm20548 antisense antisense MGP_C57BL6NJ_T0008279.1 MGP_C57BL6NJ_G0006748.1 mouse_genomes_project 5 37449694 37463257 + lincRNA lincRNA MGP_C57BL6NJ_T0008280.1 MGP_C57BL6NJ_G0006748.1 mouse_genomes_project 5 37453789 37461952 + lincRNA lincRNA MGP_C57BL6NJ_T0076027.1 MGP_C57BL6NJ_G0030732.1 mouse_genomes_project 5 151048662 151050615 - MGP_C57BL6NJ_P0076027 Grifin protein_coding protein_coding MGP_C57BL6NJ_T0010970.1 MGP_C57BL6NJ_G0009055.1 mouse_genomes_project 5 143937396 143937465 + Mir3965 miRNA miRNA MGP_C57BL6NJ_T0008328.1 MGP_C57BL6NJ_G0006788.1 mouse_genomes_project 5 66693646 66706750 - 1700027F09Rik lincRNA lincRNA MGP_C57BL6NJ_T0101724.1 MGP_C57BL6NJ_G0039770.1 mouse_genomes_project 5 18967764 18967892 - Gm25761 snoRNA snoRNA MGP_C57BL6NJ_T0004951.1 MGP_C57BL6NJ_G0004265.1 mouse_genomes_project 5 122870834 122871413 - 4930430O22Rik antisense antisense MGP_C57BL6NJ_T0004952.1 MGP_C57BL6NJ_G0004265.1 mouse_genomes_project 5 122870836 122871375 - 4930430O22Rik antisense antisense MGP_C57BL6NJ_T0075479.1 MGP_C57BL6NJ_G0030624.1 mouse_genomes_project 5 145743846 145770575 - MGP_C57BL6NJ_P0075479 Ywhag protein_coding protein_coding MGP_C57BL6NJ_T0075480.1 MGP_C57BL6NJ_G0030624.1 mouse_genomes_project 5 145743846 145770530 - MGP_C57BL6NJ_P0075480 Ywhag protein_coding protein_coding MGP_C57BL6NJ_T0075481.1 MGP_C57BL6NJ_G0030624.1 mouse_genomes_project 5 145766790 145770573 - Ywhag protein_coding retained_intron MGP_C57BL6NJ_T0075482.1 MGP_C57BL6NJ_G0030624.1 mouse_genomes_project 5 145766795 145770592 - Ywhag protein_coding processed_transcript MGP_C57BL6NJ_T0075483.1 MGP_C57BL6NJ_G0030624.1 mouse_genomes_project 5 145766871 145770526 - Ywhag protein_coding processed_transcript MGP_C57BL6NJ_T0074823.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132451702 132456038 + Kntc1 protein_coding retained_intron MGP_C57BL6NJ_T0074824.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132451712 132524620 + MGP_C57BL6NJ_P0074824 Kntc1 protein_coding protein_coding MGP_C57BL6NJ_T0074825.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132474615 132481473 + Kntc1 protein_coding processed_transcript MGP_C57BL6NJ_T0074826.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132483019 132483910 + MGP_C57BL6NJ_P0074826 Kntc1 protein_coding protein_coding MGP_C57BL6NJ_T0074827.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132488983 132491898 + Kntc1 protein_coding retained_intron MGP_C57BL6NJ_T0074828.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132514419 132524618 + MGP_C57BL6NJ_P0074828 Kntc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074829.1 MGP_C57BL6NJ_G0030508.1 mouse_genomes_project 5 132522573 132524619 + Kntc1 protein_coding retained_intron MGP_C57BL6NJ_T0008402.1 MGP_C57BL6NJ_G0006847.1 mouse_genomes_project 5 105393271 105417801 - Gm43248 lincRNA lincRNA MGP_C57BL6NJ_T0008403.1 MGP_C57BL6NJ_G0006847.1 mouse_genomes_project 5 105404838 105417339 - Gm43248 lincRNA lincRNA MGP_C57BL6NJ_T0075630.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291488 147303457 - MGP_C57BL6NJ_P0075630 Srrt protein_coding protein_coding MGP_C57BL6NJ_T0075631.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291495 147303449 - MGP_C57BL6NJ_P0075631 Srrt protein_coding protein_coding MGP_C57BL6NJ_T0075632.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291499 147303449 - MGP_C57BL6NJ_P0075632 Srrt protein_coding protein_coding MGP_C57BL6NJ_T0075633.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291501 147303206 - MGP_C57BL6NJ_P0075633 Srrt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075634.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291509 147295430 - MGP_C57BL6NJ_P0075634 Srrt protein_coding protein_coding MGP_C57BL6NJ_T0075635.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291771 147293210 - MGP_C57BL6NJ_P0075635 Srrt protein_coding protein_coding MGP_C57BL6NJ_T0075636.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147291802 147292719 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075637.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147292020 147293002 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075638.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147292063 147292638 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075639.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147292251 147293352 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075640.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147293408 147294332 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075641.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147293616 147296103 - MGP_C57BL6NJ_P0075641 Srrt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075642.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147293616 147295794 - MGP_C57BL6NJ_P0075642 Srrt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075643.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147294043 147295671 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075644.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147295370 147303258 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075645.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147295657 147296516 - Srrt protein_coding retained_intron MGP_C57BL6NJ_T0075646.1 MGP_C57BL6NJ_G0030652.1 mouse_genomes_project 5 147298437 147303423 - MGP_C57BL6NJ_P0075646 Srrt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001625.1 MGP_C57BL6NJ_G0001523.1 mouse_genomes_project 5 30876078 30878389 + TEC TEC MGP_C57BL6NJ_T0001626.1 MGP_C57BL6NJ_G0001523.1 mouse_genomes_project 5 30876080 30878389 + TEC TEC MGP_C57BL6NJ_T0010907.1 MGP_C57BL6NJ_G0008992.1 mouse_genomes_project 5 2035020 2035120 + Gm44483 miRNA miRNA MGP_C57BL6NJ_T0008545.1 MGP_C57BL6NJ_G0006939.1 mouse_genomes_project 5 132855982 132857138 - Gm16001 lincRNA lincRNA MGP_C57BL6NJ_T0008546.1 MGP_C57BL6NJ_G0006939.1 mouse_genomes_project 5 132856011 132857091 - Gm16001 lincRNA lincRNA MGP_C57BL6NJ_T0075620.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147276813 147280474 + MGP_C57BL6NJ_P0075620 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075621.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277060 147280474 + MGP_C57BL6NJ_P0075621 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075622.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277060 147280474 + MGP_C57BL6NJ_P0075622 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075623.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277571 147290251 + MGP_C57BL6NJ_P0075623 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075624.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277577 147290246 + MGP_C57BL6NJ_P0075624 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075625.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277578 147290245 + MGP_C57BL6NJ_P0075625 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075626.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147277579 147282668 + Ache protein_coding retained_intron MGP_C57BL6NJ_T0075627.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147279407 147280474 + MGP_C57BL6NJ_P0075627 Ache protein_coding protein_coding MGP_C57BL6NJ_T0075628.1 MGP_C57BL6NJ_G0030650.1 mouse_genomes_project 5 147279566 147280474 + MGP_C57BL6NJ_P0075628 Ache protein_coding protein_coding MGP_C57BL6NJ_T0073561.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114282532 114426405 - MGP_C57BL6NJ_P0073561 Evi5 protein_coding protein_coding MGP_C57BL6NJ_T0073562.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114285013 114351960 - Evi5 protein_coding retained_intron MGP_C57BL6NJ_T0073563.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114304359 114341724 - Evi5 protein_coding retained_intron MGP_C57BL6NJ_T0073564.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114328075 114420459 - MGP_C57BL6NJ_P0073564 Evi5 protein_coding protein_coding MGP_C57BL6NJ_T0073565.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114356517 114420459 - MGP_C57BL6NJ_P0073565 Evi5 protein_coding protein_coding MGP_C57BL6NJ_T0073566.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114358102 114359751 - Evi5 protein_coding retained_intron MGP_C57BL6NJ_T0073567.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114358552 114426342 - Evi5 protein_coding processed_transcript MGP_C57BL6NJ_T0073568.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114358552 114426357 - MGP_C57BL6NJ_P0073568 Evi5 protein_coding protein_coding MGP_C57BL6NJ_T0073569.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114362355 114384037 - Evi5 protein_coding retained_intron MGP_C57BL6NJ_T0073570.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114362391 114419679 - MGP_C57BL6NJ_P0073570 Evi5 protein_coding protein_coding MGP_C57BL6NJ_T0073571.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114364351 114420190 - Evi5 protein_coding processed_transcript MGP_C57BL6NJ_T0073573.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114398352 114426354 - Evi5 protein_coding processed_transcript MGP_C57BL6NJ_T0073574.1 MGP_C57BL6NJ_G0030275.1 mouse_genomes_project 5 114423927 114426350 - Evi5 protein_coding processed_transcript MGP_C57BL6NJ_T0004957.1 MGP_C57BL6NJ_G0004270.1 mouse_genomes_project 5 123991653 124030079 + Srrm4os antisense antisense MGP_C57BL6NJ_T0004958.1 MGP_C57BL6NJ_G0004270.1 mouse_genomes_project 5 123991653 124026690 + Srrm4os antisense antisense MGP_C57BL6NJ_T0073038.1 MGP_C57BL6NJ_G0030158.1 mouse_genomes_project 5 95535336 95536285 + MGP_C57BL6NJ_P0073038 Pf4 protein_coding protein_coding MGP_C57BL6NJ_T0073039.1 MGP_C57BL6NJ_G0030158.1 mouse_genomes_project 5 95535414 95536058 + MGP_C57BL6NJ_P0073039 Pf4 protein_coding protein_coding MGP_C57BL6NJ_T0073040.1 MGP_C57BL6NJ_G0030158.1 mouse_genomes_project 5 95535792 95536280 + Pf4 protein_coding retained_intron MGP_C57BL6NJ_T0015432.1 MGP_C57BL6NJ_G0013477.1 mouse_genomes_project 5 87085494 87085861 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015448.1 MGP_C57BL6NJ_G0013493.1 mouse_genomes_project 5 92773591 92773946 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001644.1 MGP_C57BL6NJ_G0001540.1 mouse_genomes_project 5 34615900 34618338 + TEC TEC MGP_C57BL6NJ_T0001674.1 MGP_C57BL6NJ_G0001570.1 mouse_genomes_project 5 45246110 45246863 - TEC TEC MGP_C57BL6NJ_T0075464.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593254 145605166 + MGP_C57BL6NJ_P0075464 Mdh2 protein_coding protein_coding MGP_C57BL6NJ_T0075465.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593410 145595016 + Mdh2 protein_coding retained_intron MGP_C57BL6NJ_T0075466.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593436 145605173 + MGP_C57BL6NJ_P0075466 Mdh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075467.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593451 145599389 + Mdh2 protein_coding retained_intron MGP_C57BL6NJ_T0075468.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593459 145602426 + MGP_C57BL6NJ_P0075468 Mdh2 protein_coding protein_coding MGP_C57BL6NJ_T0075469.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593463 145601121 + MGP_C57BL6NJ_P0075469 Mdh2 protein_coding protein_coding MGP_C57BL6NJ_T0075470.1 MGP_C57BL6NJ_G0030621.1 mouse_genomes_project 5 145593496 145598527 + Mdh2 protein_coding retained_intron MGP_C57BL6NJ_T0071335.1 MGP_C57BL6NJ_G0029848.1 mouse_genomes_project 5 30997933 31019604 - MGP_C57BL6NJ_P0071335 Ppm1g protein_coding protein_coding MGP_C57BL6NJ_T0071336.1 MGP_C57BL6NJ_G0029848.1 mouse_genomes_project 5 30997937 31019726 - MGP_C57BL6NJ_P0071336 Ppm1g protein_coding protein_coding MGP_C57BL6NJ_T0071337.1 MGP_C57BL6NJ_G0029848.1 mouse_genomes_project 5 30998371 31000353 - Ppm1g protein_coding retained_intron MGP_C57BL6NJ_T0071339.1 MGP_C57BL6NJ_G0029848.1 mouse_genomes_project 5 31000361 31002935 - MGP_C57BL6NJ_P0071339 Ppm1g protein_coding protein_coding MGP_C57BL6NJ_T0071340.1 MGP_C57BL6NJ_G0029848.1 mouse_genomes_project 5 31017820 31019604 - Ppm1g protein_coding retained_intron MGP_C57BL6NJ_T0008324.1 MGP_C57BL6NJ_G0006784.1 mouse_genomes_project 5 66255316 66260604 + 5830416I19Rik lincRNA lincRNA MGP_C57BL6NJ_T0072169.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 53989282 54023860 + MGP_C57BL6NJ_P0072169 Anapc4 protein_coding protein_coding MGP_C57BL6NJ_T0072170.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 53989396 54022805 + MGP_C57BL6NJ_P0072170 Anapc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072171.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 53997730 54004731 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072172.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 53997846 54006630 + MGP_C57BL6NJ_P0072172 Anapc4 protein_coding protein_coding MGP_C57BL6NJ_T0072173.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 53997859 54006617 + MGP_C57BL6NJ_P0072173 Anapc4 protein_coding protein_coding MGP_C57BL6NJ_T0072174.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54002574 54004806 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072175.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54006254 54015229 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072176.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54011471 54013036 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072177.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54015121 54022059 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072178.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54016975 54018612 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072179.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54017217 54020717 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0072180.1 MGP_C57BL6NJ_G0029981.1 mouse_genomes_project 5 54021675 54022797 + Anapc4 protein_coding retained_intron MGP_C57BL6NJ_T0002017.1 MGP_C57BL6NJ_G0001908.1 mouse_genomes_project 5 144153646 144155111 - TEC TEC MGP_C57BL6NJ_T0015274.1 MGP_C57BL6NJ_G0013319.1 mouse_genomes_project 5 20576020 20576521 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074083.1 MGP_C57BL6NJ_G0030380.1 mouse_genomes_project 5 122208047 122210972 - MGP_C57BL6NJ_P0074083 Gm9936 protein_coding protein_coding MGP_C57BL6NJ_T0075618.1 MGP_C57BL6NJ_G0030649.1 mouse_genomes_project 5 147229941 147235230 - MGP_C57BL6NJ_P0075618 Muc3a protein_coding protein_coding MGP_C57BL6NJ_T0075619.1 MGP_C57BL6NJ_G0030649.1 mouse_genomes_project 5 147231165 147240157 - MGP_C57BL6NJ_P0075619 Muc3a protein_coding protein_coding MGP_C57BL6NJ_T0001752.1 MGP_C57BL6NJ_G0001647.1 mouse_genomes_project 5 59607651 59608706 + TEC TEC MGP_C57BL6NJ_T0071341.1 MGP_C57BL6NJ_G0029849.1 mouse_genomes_project 5 31045664 31046222 - MGP_C57BL6NJ_P0071341 Gm9970 protein_coding protein_coding MGP_C57BL6NJ_T0073514.1 MGP_C57BL6NJ_G0030264.1 mouse_genomes_project 5 113605303 113802133 - MGP_C57BL6NJ_P0073514 Tgfbr3 protein_coding protein_coding MGP_C57BL6NJ_T0073515.1 MGP_C57BL6NJ_G0030264.1 mouse_genomes_project 5 113608212 113699156 - Tgfbr3 protein_coding processed_transcript MGP_C57BL6NJ_T0073516.1 MGP_C57BL6NJ_G0030264.1 mouse_genomes_project 5 113618082 113634665 - MGP_C57BL6NJ_P0073516 Tgfbr3 protein_coding protein_coding MGP_C57BL6NJ_T0073517.1 MGP_C57BL6NJ_G0030264.1 mouse_genomes_project 5 113650583 113802099 - Tgfbr3 protein_coding retained_intron MGP_C57BL6NJ_T0099125.1 MGP_C57BL6NJ_G0037189.1 mouse_genomes_project 5 144043817 144043931 + n-R5s178 rRNA rRNA MGP_C57BL6NJ_T0102280.1 MGP_C57BL6NJ_G0040262.1 mouse_genomes_project 5 122161461 122162068 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001886.1 MGP_C57BL6NJ_G0001779.1 mouse_genomes_project 5 114348539 114349885 - TEC TEC MGP_C57BL6NJ_T0001833.1 MGP_C57BL6NJ_G0001726.1 mouse_genomes_project 5 77548254 77549855 - TEC TEC MGP_C57BL6NJ_T0070671.1 MGP_C57BL6NJ_G0029723.1 mouse_genomes_project 5 7114929 7370241 - MGP_C57BL6NJ_P0070671 Grm3 protein_coding protein_coding MGP_C57BL6NJ_T0015230.1 MGP_C57BL6NJ_G0013275.1 mouse_genomes_project 5 488289 488460 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001830.1 MGP_C57BL6NJ_G0001723.1 mouse_genomes_project 5 77272692 77276574 - TEC TEC MGP_C57BL6NJ_T0073364.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108354384 108784443 + MGP_C57BL6NJ_P0073364 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0073365.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108354384 108784442 + MGP_C57BL6NJ_P0073365 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0073366.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108354523 108540998 + Arhgap24 protein_coding retained_intron MGP_C57BL6NJ_T0073367.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108537191 108784443 + MGP_C57BL6NJ_P0073367 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0073368.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108597757 108784443 + MGP_C57BL6NJ_P0073368 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0073369.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108645148 108784444 + MGP_C57BL6NJ_P0073369 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0073370.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108689998 108762687 + Arhgap24 protein_coding processed_transcript MGP_C57BL6NJ_T0073371.1 MGP_C57BL6NJ_G0030229.1 mouse_genomes_project 5 108726795 108784443 + MGP_C57BL6NJ_P0073371 Arhgap24 protein_coding protein_coding MGP_C57BL6NJ_T0074932.1 MGP_C57BL6NJ_G0030525.1 mouse_genomes_project 5 133258170 133274160 - MGP_C57BL6NJ_P0074932 Rilpl2 protein_coding protein_coding MGP_C57BL6NJ_T0074933.1 MGP_C57BL6NJ_G0030525.1 mouse_genomes_project 5 133271032 133274104 - Rilpl2 protein_coding retained_intron MGP_C57BL6NJ_T0099269.1 MGP_C57BL6NJ_G0037333.1 mouse_genomes_project 5 2230515 2230643 - Gm22897 scaRNA scaRNA MGP_C57BL6NJ_T0008478.1 MGP_C57BL6NJ_G0006895.1 mouse_genomes_project 5 119273371 119274786 + lincRNA lincRNA MGP_C57BL6NJ_T0071183.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30548028 30600014 + MGP_C57BL6NJ_P0071183 Mapre3 protein_coding protein_coding MGP_C57BL6NJ_T0071184.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30548120 30599967 + Mapre3 protein_coding retained_intron MGP_C57BL6NJ_T0071185.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30548141 30599967 + MGP_C57BL6NJ_P0071185 Mapre3 protein_coding protein_coding MGP_C57BL6NJ_T0071186.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30548147 30596485 + Mapre3 protein_coding retained_intron MGP_C57BL6NJ_T0071187.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30587706 30597266 + MGP_C57BL6NJ_P0071187 Mapre3 protein_coding protein_coding MGP_C57BL6NJ_T0071188.1 MGP_C57BL6NJ_G0029826.1 mouse_genomes_project 5 30598429 30599163 + Mapre3 protein_coding retained_intron MGP_C57BL6NJ_T0074175.1 MGP_C57BL6NJ_G0030400.1 mouse_genomes_project 5 122905792 122915612 + MGP_C57BL6NJ_P0074175 Pla2g1b protein_coding protein_coding MGP_C57BL6NJ_T0074176.1 MGP_C57BL6NJ_G0030400.1 mouse_genomes_project 5 122905796 122915600 + Pla2g1b protein_coding processed_transcript MGP_C57BL6NJ_T0074177.1 MGP_C57BL6NJ_G0030400.1 mouse_genomes_project 5 122905796 122915626 + MGP_C57BL6NJ_P0074177 Pla2g1b protein_coding protein_coding MGP_C57BL6NJ_T0074178.1 MGP_C57BL6NJ_G0030400.1 mouse_genomes_project 5 122905802 122915465 + MGP_C57BL6NJ_P0074178 Pla2g1b protein_coding protein_coding MGP_C57BL6NJ_T0074179.1 MGP_C57BL6NJ_G0030400.1 mouse_genomes_project 5 122905802 122912810 + MGP_C57BL6NJ_P0074179 Pla2g1b protein_coding protein_coding MGP_C57BL6NJ_T0099475.1 MGP_C57BL6NJ_G0037532.1 mouse_genomes_project 5 122964374 122965059 + Gm13840 sense_intronic sense_intronic MGP_C57BL6NJ_T0100447.1 MGP_C57BL6NJ_G0038493.1 mouse_genomes_project 5 68600115 68600222 - Gm22929 snRNA snRNA MGP_C57BL6NJ_T0073535.1 MGP_C57BL6NJ_G0030270.1 mouse_genomes_project 5 114034673 114080464 + MGP_C57BL6NJ_P0073535 protein_coding protein_coding MGP_C57BL6NJ_T0001942.1 MGP_C57BL6NJ_G0001835.1 mouse_genomes_project 5 130075044 130080479 + TEC TEC MGP_C57BL6NJ_T0076084.1 MGP_C57BL6NJ_G0030744.1 mouse_genomes_project 5 153181098 153185337 - MGP_C57BL6NJ_P0076084 Papolb protein_coding protein_coding MGP_C57BL6NJ_T0004866.1 MGP_C57BL6NJ_G0004205.1 mouse_genomes_project 5 69513651 69514202 - Gm15949 antisense antisense MGP_C57BL6NJ_T0071342.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045853 31058354 + MGP_C57BL6NJ_P0071342 Nrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071343.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045853 31058348 + MGP_C57BL6NJ_P0071343 Nrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071344.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045866 31051749 + MGP_C57BL6NJ_P0071344 Nrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071345.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045884 31052623 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071346.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045892 31051670 + MGP_C57BL6NJ_P0071346 Nrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071347.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31045921 31054702 + MGP_C57BL6NJ_P0071347 Nrbp1 protein_coding protein_coding MGP_C57BL6NJ_T0071348.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31050215 31051224 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071349.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31054210 31056769 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071350.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31056142 31058351 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071351.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31056378 31057521 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0071352.1 MGP_C57BL6NJ_G0029850.1 mouse_genomes_project 5 31057132 31058237 + Nrbp1 protein_coding retained_intron MGP_C57BL6NJ_T0001680.1 MGP_C57BL6NJ_G0001576.1 mouse_genomes_project 5 45494437 45497057 - TEC TEC MGP_C57BL6NJ_T0070755.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19884256 19966462 - MGP_C57BL6NJ_P0070755 Ptpn12 protein_coding protein_coding MGP_C57BL6NJ_T0070756.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19884257 19887037 - Ptpn12 protein_coding retained_intron MGP_C57BL6NJ_T0070757.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19895924 19900095 - Ptpn12 protein_coding retained_intron MGP_C57BL6NJ_T0070758.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19896098 19908218 - Ptpn12 protein_coding retained_intron MGP_C57BL6NJ_T0070759.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19899971 19966304 - MGP_C57BL6NJ_P0070759 Ptpn12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070760.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19904045 19966448 - MGP_C57BL6NJ_P0070760 Ptpn12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070761.1 MGP_C57BL6NJ_G0029743.1 mouse_genomes_project 5 19908055 19966276 - MGP_C57BL6NJ_P0070761 Ptpn12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002042.1 MGP_C57BL6NJ_G0001933.1 mouse_genomes_project 5 158684443 158685486 + TEC TEC MGP_C57BL6NJ_T0074621.1 MGP_C57BL6NJ_G0030482.1 mouse_genomes_project 5 130936257 130986194 - MGP_C57BL6NJ_P0074621 Atp2a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074622.1 MGP_C57BL6NJ_G0030482.1 mouse_genomes_project 5 130936258 130986404 - MGP_C57BL6NJ_P0074622 Atp2a2 protein_coding protein_coding MGP_C57BL6NJ_T0074623.1 MGP_C57BL6NJ_G0030482.1 mouse_genomes_project 5 130973443 130986130 - Atp2a2 protein_coding processed_transcript MGP_C57BL6NJ_T0074624.1 MGP_C57BL6NJ_G0030482.1 mouse_genomes_project 5 130973496 130986126 - Atp2a2 protein_coding retained_intron MGP_C57BL6NJ_T0072477.1 MGP_C57BL6NJ_G0030033.1 mouse_genomes_project 5 72219348 72247656 - MGP_C57BL6NJ_P0072477 Yipf7 protein_coding protein_coding MGP_C57BL6NJ_T0072478.1 MGP_C57BL6NJ_G0030033.1 mouse_genomes_project 5 72221987 72247597 - MGP_C57BL6NJ_P0072478 Yipf7 protein_coding protein_coding MGP_C57BL6NJ_T0071970.1 MGP_C57BL6NJ_G0029947.1 mouse_genomes_project 5 40067807 40215785 - MGP_C57BL6NJ_P0071970 Hs3st1 protein_coding protein_coding MGP_C57BL6NJ_T0071971.1 MGP_C57BL6NJ_G0029947.1 mouse_genomes_project 5 40067811 40098632 - MGP_C57BL6NJ_P0071971 Hs3st1 protein_coding protein_coding MGP_C57BL6NJ_T0071972.1 MGP_C57BL6NJ_G0029947.1 mouse_genomes_project 5 40068641 40099244 - MGP_C57BL6NJ_P0071972 Hs3st1 protein_coding protein_coding MGP_C57BL6NJ_T0071973.1 MGP_C57BL6NJ_G0029947.1 mouse_genomes_project 5 40068946 40098595 - MGP_C57BL6NJ_P0071973 Hs3st1 protein_coding protein_coding MGP_C57BL6NJ_T0073772.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117571161 117576103 - MGP_C57BL6NJ_P0073772 Noc4l protein_coding protein_coding MGP_C57BL6NJ_T0073773.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117571590 117572761 - Noc4l protein_coding retained_intron MGP_C57BL6NJ_T0073774.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117573813 117575945 - Noc4l protein_coding retained_intron MGP_C57BL6NJ_T0073775.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117573987 117576034 - Noc4l protein_coding retained_intron MGP_C57BL6NJ_T0073776.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117574107 117576052 - Noc4l protein_coding retained_intron MGP_C57BL6NJ_T0073777.1 MGP_C57BL6NJ_G0030319.1 mouse_genomes_project 5 117575699 117576066 - Noc4l protein_coding retained_intron MGP_C57BL6NJ_T0070544.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2874487 2957302 - MGP_C57BL6NJ_P0070544 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070545.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2874491 2957271 - MGP_C57BL6NJ_P0070545 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070546.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2876191 2915980 - Cfap69 protein_coding processed_transcript MGP_C57BL6NJ_T0070547.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2876247 2877711 - MGP_C57BL6NJ_P0070547 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070548.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2876337 2882421 - MGP_C57BL6NJ_P0070548 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070549.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2876380 2911075 - MGP_C57BL6NJ_P0070549 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070550.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2881565 2957106 - MGP_C57BL6NJ_P0070550 Cfap69 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070551.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2884384 2957271 - MGP_C57BL6NJ_P0070551 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070552.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2888855 2957295 - MGP_C57BL6NJ_P0070552 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0070553.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2919517 2919891 - Cfap69 protein_coding retained_intron MGP_C57BL6NJ_T0070554.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2938884 2957290 - Cfap69 protein_coding retained_intron MGP_C57BL6NJ_T0070555.1 MGP_C57BL6NJ_G0029705.1 mouse_genomes_project 5 2942885 2956370 - MGP_C57BL6NJ_P0070555 Cfap69 protein_coding protein_coding MGP_C57BL6NJ_T0072882.1 MGP_C57BL6NJ_G0030114.1 mouse_genomes_project 5 91823143 92048461 - MGP_C57BL6NJ_P0072882 Ugt2a2 protein_coding protein_coding MGP_C57BL6NJ_T0072884.1 MGP_C57BL6NJ_G0030114.1 mouse_genomes_project 5 91823996 92048463 - MGP_C57BL6NJ_P0072884 Ugt2a2 protein_coding protein_coding MGP_C57BL6NJ_T0074256.1 MGP_C57BL6NJ_G0030411.1 mouse_genomes_project 5 123955759 123972022 - MGP_C57BL6NJ_P0074256 Hspb8 protein_coding protein_coding MGP_C57BL6NJ_T0074257.1 MGP_C57BL6NJ_G0030411.1 mouse_genomes_project 5 123956208 123963221 - Hspb8 protein_coding processed_transcript MGP_C57BL6NJ_T0004934.1 MGP_C57BL6NJ_G0004253.1 mouse_genomes_project 5 117353550 117355508 + Gm42596 antisense antisense MGP_C57BL6NJ_T0099478.1 MGP_C57BL6NJ_G0037535.1 mouse_genomes_project 5 137893500 137894524 - Gm42871 sense_intronic sense_intronic MGP_C57BL6NJ_T0008550.1 MGP_C57BL6NJ_G0006943.1 mouse_genomes_project 5 134847242 134851196 - Gm42945 lincRNA lincRNA MGP_C57BL6NJ_T0008551.1 MGP_C57BL6NJ_G0006943.1 mouse_genomes_project 5 134847256 134854679 - Gm42945 lincRNA lincRNA MGP_C57BL6NJ_T0073918.1 MGP_C57BL6NJ_G0030347.1 mouse_genomes_project 5 120536077 120536605 + MGP_C57BL6NJ_P0073918 Aym1 protein_coding protein_coding MGP_C57BL6NJ_T0018614.1 MGP_C57BL6NJ_G0015992.1 mouse_genomes_project 5 59132011 59295616 - 4932441J04Rik processed_transcript antisense MGP_C57BL6NJ_T0018615.1 MGP_C57BL6NJ_G0015992.1 mouse_genomes_project 5 59293835 59297897 - 4932441J04Rik processed_transcript retained_intron MGP_C57BL6NJ_T0001837.1 MGP_C57BL6NJ_G0001730.1 mouse_genomes_project 5 78938470 78940794 + TEC TEC MGP_C57BL6NJ_T0001588.1 MGP_C57BL6NJ_G0001487.1 mouse_genomes_project 5 11959428 11961627 + TEC TEC MGP_C57BL6NJ_T0001583.1 MGP_C57BL6NJ_G0001482.1 mouse_genomes_project 5 10773095 10780370 + TEC TEC MGP_C57BL6NJ_T0018652.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416557 133456374 + Tctn2 processed_transcript processed_transcript MGP_C57BL6NJ_T0018653.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416557 133419889 + Tctn2 processed_transcript retained_intron MGP_C57BL6NJ_T0018654.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416592 133423458 + Tctn2 processed_transcript retained_intron MGP_C57BL6NJ_T0018655.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416595 133421139 + Tctn2 processed_transcript retained_intron MGP_C57BL6NJ_T0018656.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416600 133447174 + Tctn2 processed_transcript retained_intron MGP_C57BL6NJ_T0018657.1 MGP_C57BL6NJ_G0016006.1 mouse_genomes_project 5 133416605 133456094 + Tctn2 processed_transcript processed_transcript MGP_C57BL6NJ_T0001639.1 MGP_C57BL6NJ_G0001535.1 mouse_genomes_project 5 32796345 32797387 - TEC TEC MGP_C57BL6NJ_T0008500.1 MGP_C57BL6NJ_G0006907.1 mouse_genomes_project 5 123090980 123091748 - 1110006O24Rik lincRNA lincRNA MGP_C57BL6NJ_T0073480.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113086804 113170990 - MGP_C57BL6NJ_P0073480 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073481.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113086806 113170135 - MGP_C57BL6NJ_P0073481 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073482.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113086807 113170990 - MGP_C57BL6NJ_P0073482 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073483.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113086809 113170757 - MGP_C57BL6NJ_P0073483 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073484.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113087138 113094456 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073485.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113088035 113170965 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073486.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113106872 113170986 - MGP_C57BL6NJ_P0073486 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073487.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113107883 113170724 - MGP_C57BL6NJ_P0073487 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073488.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113108134 113139598 - MGP_C57BL6NJ_P0073488 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073489.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113108302 113170810 - MGP_C57BL6NJ_P0073489 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073490.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113108349 113170724 - MGP_C57BL6NJ_P0073490 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073491.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113108492 113170810 - MGP_C57BL6NJ_P0073491 Zfp644 protein_coding protein_coding MGP_C57BL6NJ_T0073492.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113162874 113169183 - Zfp644 protein_coding retained_intron MGP_C57BL6NJ_T0073493.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113163969 113170326 - Zfp644 protein_coding retained_intron MGP_C57BL6NJ_T0073494.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113164740 113170706 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073495.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113164753 113170704 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073496.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113169214 113171447 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073497.1 MGP_C57BL6NJ_G0030261.1 mouse_genomes_project 5 113169519 113170172 - Zfp644 protein_coding processed_transcript MGP_C57BL6NJ_T0073848.1 MGP_C57BL6NJ_G0030333.1 mouse_genomes_project 5 119396313 119408026 + MGP_C57BL6NJ_P0073848 Tfip11 protein_coding protein_coding MGP_C57BL6NJ_T0073849.1 MGP_C57BL6NJ_G0030333.1 mouse_genomes_project 5 119396376 119401868 + MGP_C57BL6NJ_P0073849 Tfip11 protein_coding protein_coding MGP_C57BL6NJ_T0073850.1 MGP_C57BL6NJ_G0030333.1 mouse_genomes_project 5 119396447 119398135 + MGP_C57BL6NJ_P0073850 Tfip11 protein_coding protein_coding MGP_C57BL6NJ_T0073851.1 MGP_C57BL6NJ_G0030333.1 mouse_genomes_project 5 119405594 119407226 + Tfip11 protein_coding retained_intron MGP_C57BL6NJ_T0075979.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150108551 150132796 - MGP_C57BL6NJ_P0075979 Ints1 protein_coding protein_coding MGP_C57BL6NJ_T0075980.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150108554 150112128 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075981.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150108554 150132761 - MGP_C57BL6NJ_P0075981 Ints1 protein_coding protein_coding MGP_C57BL6NJ_T0075982.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150108555 150112248 - MGP_C57BL6NJ_P0075982 Ints1 protein_coding protein_coding MGP_C57BL6NJ_T0075983.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150118856 150119765 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075984.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150122353 150125168 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075985.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150124367 150132797 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075986.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150124693 150125724 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075987.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150126640 150128998 - Ints1 protein_coding retained_intron MGP_C57BL6NJ_T0075988.1 MGP_C57BL6NJ_G0030720.1 mouse_genomes_project 5 150129884 150132797 - MGP_C57BL6NJ_P0075988 Ints1 protein_coding protein_coding MGP_C57BL6NJ_T0018607.1 MGP_C57BL6NJ_G0015990.1 mouse_genomes_project 5 53289982 53293849 + 9230114K14Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018608.1 MGP_C57BL6NJ_G0015990.1 mouse_genomes_project 5 53289989 53383842 + 9230114K14Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018609.1 MGP_C57BL6NJ_G0015990.1 mouse_genomes_project 5 53289989 53297326 + 9230114K14Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018610.1 MGP_C57BL6NJ_G0015990.1 mouse_genomes_project 5 53290023 53349356 + 9230114K14Rik processed_transcript lincRNA MGP_C57BL6NJ_T0075416.1 MGP_C57BL6NJ_G0030611.1 mouse_genomes_project 5 145094802 145112184 + MGP_C57BL6NJ_P0075416 Trim50 protein_coding protein_coding MGP_C57BL6NJ_T0075417.1 MGP_C57BL6NJ_G0030611.1 mouse_genomes_project 5 145094803 145112535 + MGP_C57BL6NJ_P0075417 Trim50 protein_coding protein_coding MGP_C57BL6NJ_T0099116.1 MGP_C57BL6NJ_G0037180.1 mouse_genomes_project 5 67438435 67438554 + Gm25154 rRNA rRNA MGP_C57BL6NJ_T0001743.1 MGP_C57BL6NJ_G0001638.1 mouse_genomes_project 5 59361730 59363908 + TEC TEC MGP_C57BL6NJ_T0075278.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979020 144086424 - MGP_C57BL6NJ_P0075278 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075279.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979020 144085964 - MGP_C57BL6NJ_P0075279 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075280.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979025 144086396 - MGP_C57BL6NJ_P0075280 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075281.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979027 143985860 - MGP_C57BL6NJ_P0075281 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075282.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979033 144086424 - MGP_C57BL6NJ_P0075282 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075283.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979043 144086292 - MGP_C57BL6NJ_P0075283 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075284.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979043 144086284 - MGP_C57BL6NJ_P0075284 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075285.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979043 144086284 - MGP_C57BL6NJ_P0075285 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075286.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979061 144086297 - MGP_C57BL6NJ_P0075286 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075287.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979150 144001221 - MGP_C57BL6NJ_P0075287 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075288.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143979937 144086284 - MGP_C57BL6NJ_P0075288 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075289.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143980187 144044754 - MGP_C57BL6NJ_P0075289 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075290.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143982638 144012203 - MGP_C57BL6NJ_P0075290 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075291.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143984910 144001275 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075292.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143985917 144015613 - MGP_C57BL6NJ_P0075292 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075293.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143988211 144015634 - MGP_C57BL6NJ_P0075293 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075294.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 143999670 144085985 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075295.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144009714 144022548 - MGP_C57BL6NJ_P0075295 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075296.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144009714 144022548 - MGP_C57BL6NJ_P0075296 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075297.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144009923 144011634 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075298.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144009926 144022548 - MGP_C57BL6NJ_P0075298 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075299.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144010910 144022548 - MGP_C57BL6NJ_P0075299 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075300.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144011951 144022452 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075301.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144012067 144028939 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075302.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144018021 144042837 - MGP_C57BL6NJ_P0075302 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0075303.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144029653 144086387 - Gtf2ird1 protein_coding retained_intron MGP_C57BL6NJ_T0075304.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144031546 144086382 - Gtf2ird1 protein_coding processed_transcript MGP_C57BL6NJ_T0075305.1 MGP_C57BL6NJ_G0030587.1 mouse_genomes_project 5 144037827 144085658 - MGP_C57BL6NJ_P0075305 Gtf2ird1 protein_coding protein_coding MGP_C57BL6NJ_T0004977.1 MGP_C57BL6NJ_G0004282.1 mouse_genomes_project 5 130046183 130058949 - Gm16552 antisense antisense MGP_C57BL6NJ_T0015242.1 MGP_C57BL6NJ_G0013287.1 mouse_genomes_project 5 5502630 5503045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008630.1 MGP_C57BL6NJ_G0007000.1 mouse_genomes_project 5 160287922 160308040 + Gm15407 lincRNA lincRNA MGP_C57BL6NJ_T0001876.1 MGP_C57BL6NJ_G0001769.1 mouse_genomes_project 5 110032537 110035316 - TEC TEC MGP_C57BL6NJ_T0073117.1 MGP_C57BL6NJ_G0030180.1 mouse_genomes_project 5 97242476 97245720 - Cxcl10 protein_coding retained_intron MGP_C57BL6NJ_T0073118.1 MGP_C57BL6NJ_G0030180.1 mouse_genomes_project 5 97242476 97245735 - MGP_C57BL6NJ_P0073118 Cxcl10 protein_coding protein_coding MGP_C57BL6NJ_T0073119.1 MGP_C57BL6NJ_G0030180.1 mouse_genomes_project 5 97242643 97245742 - MGP_C57BL6NJ_P0073119 Cxcl10 protein_coding protein_coding MGP_C57BL6NJ_T0073120.1 MGP_C57BL6NJ_G0030180.1 mouse_genomes_project 5 97244853 97245735 - Cxcl10 protein_coding retained_intron MGP_C57BL6NJ_T0071135.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937249 29978167 + MGP_C57BL6NJ_P0071135 protein_coding protein_coding MGP_C57BL6NJ_T0071136.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937303 29939342 + protein_coding retained_intron MGP_C57BL6NJ_T0071137.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937308 29955745 + protein_coding retained_intron MGP_C57BL6NJ_T0071138.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937315 29963182 + protein_coding retained_intron MGP_C57BL6NJ_T0071139.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937318 29962421 + MGP_C57BL6NJ_P0071139 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071140.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29937342 29974713 + MGP_C57BL6NJ_P0071140 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071141.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29968804 29972733 + protein_coding retained_intron MGP_C57BL6NJ_T0071142.1 MGP_C57BL6NJ_G0029817.1 mouse_genomes_project 5 29969284 29972987 + protein_coding processed_transcript MGP_C57BL6NJ_T0099459.1 MGP_C57BL6NJ_G0037516.1 mouse_genomes_project 5 2433930 2438689 - Gm10484 sense_intronic sense_intronic MGP_C57BL6NJ_T0015513.1 MGP_C57BL6NJ_G0013558.1 mouse_genomes_project 5 116226801 116227385 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008433.1 MGP_C57BL6NJ_G0006867.1 mouse_genomes_project 5 112810599 112823309 + Gm42914 lincRNA lincRNA MGP_C57BL6NJ_T0001787.1 MGP_C57BL6NJ_G0001681.1 mouse_genomes_project 5 68656966 68659901 + TEC TEC MGP_C57BL6NJ_T0075825.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148327974 148336583 - MGP_C57BL6NJ_P0075825 Taf6 protein_coding protein_coding MGP_C57BL6NJ_T0075826.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148327974 148336808 - MGP_C57BL6NJ_P0075826 Taf6 protein_coding protein_coding MGP_C57BL6NJ_T0075827.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148327977 148336562 - MGP_C57BL6NJ_P0075827 Taf6 protein_coding protein_coding MGP_C57BL6NJ_T0075828.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148327985 148336578 - MGP_C57BL6NJ_P0075828 Taf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075829.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148329505 148330826 - Taf6 protein_coding retained_intron MGP_C57BL6NJ_T0075830.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148332032 148336583 - MGP_C57BL6NJ_P0075830 Taf6 protein_coding protein_coding MGP_C57BL6NJ_T0075831.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148333274 148336572 - MGP_C57BL6NJ_P0075831 Taf6 protein_coding protein_coding MGP_C57BL6NJ_T0075832.1 MGP_C57BL6NJ_G0030688.1 mouse_genomes_project 5 148335434 148336573 - Taf6 protein_coding processed_transcript MGP_C57BL6NJ_T0015613.1 MGP_C57BL6NJ_G0013658.1 mouse_genomes_project 5 161036671 161037221 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008308.1 MGP_C57BL6NJ_G0006769.1 mouse_genomes_project 5 46728808 46734400 - 4930405L22Rik lincRNA lincRNA MGP_C57BL6NJ_T0071271.1 MGP_C57BL6NJ_G0029839.1 mouse_genomes_project 5 30893620 30899277 + MGP_C57BL6NJ_P0071271 Dnajc5g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071272.1 MGP_C57BL6NJ_G0029839.1 mouse_genomes_project 5 30895599 30899032 + MGP_C57BL6NJ_P0071272 Dnajc5g protein_coding protein_coding MGP_C57BL6NJ_T0071273.1 MGP_C57BL6NJ_G0029839.1 mouse_genomes_project 5 30895609 30899136 + MGP_C57BL6NJ_P0071273 Dnajc5g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071274.1 MGP_C57BL6NJ_G0029839.1 mouse_genomes_project 5 30895611 30899819 + MGP_C57BL6NJ_P0071274 Dnajc5g protein_coding protein_coding MGP_C57BL6NJ_T0008400.1 MGP_C57BL6NJ_G0006845.1 mouse_genomes_project 5 104892315 104897505 + Gm43252 lincRNA lincRNA MGP_C57BL6NJ_T0076094.1 MGP_C57BL6NJ_G0030747.1 mouse_genomes_project 5 153362059 153383646 + MGP_C57BL6NJ_P0076094 Slc29a4 protein_coding protein_coding MGP_C57BL6NJ_T0076095.1 MGP_C57BL6NJ_G0030747.1 mouse_genomes_project 5 153372944 153395617 + MGP_C57BL6NJ_P0076095 Slc29a4 protein_coding protein_coding MGP_C57BL6NJ_T0071524.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33388689 33429774 + MGP_C57BL6NJ_P0071524 Maea protein_coding protein_coding MGP_C57BL6NJ_T0071525.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33388741 33419173 + MGP_C57BL6NJ_P0071525 Maea protein_coding protein_coding MGP_C57BL6NJ_T0071526.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33388745 33416830 + MGP_C57BL6NJ_P0071526 Maea protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071527.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33389365 33416881 + MGP_C57BL6NJ_P0071527 Maea protein_coding protein_coding MGP_C57BL6NJ_T0071528.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33419048 33428299 + Maea protein_coding retained_intron MGP_C57BL6NJ_T0071529.1 MGP_C57BL6NJ_G0029875.1 mouse_genomes_project 5 33428074 33429027 + Maea protein_coding retained_intron MGP_C57BL6NJ_T0071849.1 MGP_C57BL6NJ_G0029927.1 mouse_genomes_project 5 37121267 37210483 + MGP_C57BL6NJ_P0071849 Ppp2r2c protein_coding protein_coding MGP_C57BL6NJ_T0071850.1 MGP_C57BL6NJ_G0029927.1 mouse_genomes_project 5 37121417 37185334 + MGP_C57BL6NJ_P0071850 Ppp2r2c protein_coding protein_coding MGP_C57BL6NJ_T0071851.1 MGP_C57BL6NJ_G0029927.1 mouse_genomes_project 5 37193352 37194110 + Ppp2r2c protein_coding processed_transcript MGP_C57BL6NJ_T0071738.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35201597 35208511 + MGP_C57BL6NJ_P0071738 Hgfac protein_coding protein_coding MGP_C57BL6NJ_T0071739.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35201665 35208548 + Hgfac protein_coding retained_intron MGP_C57BL6NJ_T0071740.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35201665 35203769 + MGP_C57BL6NJ_P0071740 Hgfac protein_coding protein_coding MGP_C57BL6NJ_T0071741.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35203693 35205533 + Hgfac protein_coding retained_intron MGP_C57BL6NJ_T0071742.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35204435 35207050 + MGP_C57BL6NJ_P0071742 Hgfac protein_coding protein_coding MGP_C57BL6NJ_T0071743.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35204912 35205998 + Hgfac protein_coding retained_intron MGP_C57BL6NJ_T0071744.1 MGP_C57BL6NJ_G0029905.1 mouse_genomes_project 5 35206651 35208493 + Hgfac protein_coding retained_intron MGP_C57BL6NJ_T0073026.1 MGP_C57BL6NJ_G0030154.1 mouse_genomes_project 5 95299435 95341068 + MGP_C57BL6NJ_P0073026 5830473C10Rik protein_coding protein_coding MGP_C57BL6NJ_T0073027.1 MGP_C57BL6NJ_G0030154.1 mouse_genomes_project 5 95299545 95318446 + MGP_C57BL6NJ_P0073027 5830473C10Rik protein_coding protein_coding MGP_C57BL6NJ_T0008264.1 MGP_C57BL6NJ_G0006739.1 mouse_genomes_project 5 32272611 32280473 - Gm7596 lincRNA lincRNA MGP_C57BL6NJ_T0008265.1 MGP_C57BL6NJ_G0006739.1 mouse_genomes_project 5 32272637 32275871 - Gm7596 lincRNA lincRNA MGP_C57BL6NJ_T0008658.1 MGP_C57BL6NJ_G0007018.1 mouse_genomes_project 5 162224793 162225059 - Gm43690 lincRNA lincRNA MGP_C57BL6NJ_T0002016.1 MGP_C57BL6NJ_G0001907.1 mouse_genomes_project 5 144113974 144118184 - TEC TEC MGP_C57BL6NJ_T0070525.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2776205 2809282 - Cldn12 protein_coding processed_transcript MGP_C57BL6NJ_T0070526.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2795252 2809159 - MGP_C57BL6NJ_P0070526 Cldn12 protein_coding protein_coding MGP_C57BL6NJ_T0070527.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2795346 2809243 - MGP_C57BL6NJ_P0070527 Cldn12 protein_coding protein_coding MGP_C57BL6NJ_T0070528.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2795348 2809195 - MGP_C57BL6NJ_P0070528 Cldn12 protein_coding protein_coding MGP_C57BL6NJ_T0070529.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2795460 2809100 - MGP_C57BL6NJ_P0070529 Cldn12 protein_coding protein_coding MGP_C57BL6NJ_T0070530.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2798645 2809159 - MGP_C57BL6NJ_P0070530 Cldn12 protein_coding protein_coding MGP_C57BL6NJ_T0070531.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2805469 2809328 - Cldn12 protein_coding processed_transcript MGP_C57BL6NJ_T0070532.1 MGP_C57BL6NJ_G0029703.1 mouse_genomes_project 5 2807597 2808819 - Cldn12 protein_coding processed_transcript MGP_C57BL6NJ_T0008600.1 MGP_C57BL6NJ_G0006973.1 mouse_genomes_project 5 147730469 147736038 - Gm15498 lincRNA lincRNA MGP_C57BL6NJ_T0071777.1 MGP_C57BL6NJ_G0029914.1 mouse_genomes_project 5 35905669 35932328 - MGP_C57BL6NJ_P0071777 Sh3tc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071778.1 MGP_C57BL6NJ_G0029914.1 mouse_genomes_project 5 35905671 35924633 - MGP_C57BL6NJ_P0071778 Sh3tc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071779.1 MGP_C57BL6NJ_G0029914.1 mouse_genomes_project 5 35905673 35927620 - Sh3tc1 protein_coding retained_intron MGP_C57BL6NJ_T0071780.1 MGP_C57BL6NJ_G0029914.1 mouse_genomes_project 5 35905799 35932479 - MGP_C57BL6NJ_P0071780 Sh3tc1 protein_coding protein_coding MGP_C57BL6NJ_T0071781.1 MGP_C57BL6NJ_G0029914.1 mouse_genomes_project 5 35931449 35937394 - Sh3tc1 protein_coding processed_transcript MGP_C57BL6NJ_T0073357.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107678804 107836060 - MGP_C57BL6NJ_P0073357 Wdfy3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073358.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107678805 107926417 - MGP_C57BL6NJ_P0073358 Wdfy3 protein_coding protein_coding MGP_C57BL6NJ_T0073359.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107680786 107699693 - Wdfy3 protein_coding retained_intron MGP_C57BL6NJ_T0073360.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107682007 107836060 - MGP_C57BL6NJ_P0073360 Wdfy3 protein_coding protein_coding MGP_C57BL6NJ_T0073361.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107776009 107784046 - MGP_C57BL6NJ_P0073361 Wdfy3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073362.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107782498 107926417 - MGP_C57BL6NJ_P0073362 Wdfy3 protein_coding protein_coding MGP_C57BL6NJ_T0073363.1 MGP_C57BL6NJ_G0030228.1 mouse_genomes_project 5 107788273 107790869 - Wdfy3 protein_coding processed_transcript MGP_C57BL6NJ_T0015570.1 MGP_C57BL6NJ_G0013615.1 mouse_genomes_project 5 148102740 148103118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010954.1 MGP_C57BL6NJ_G0009039.1 mouse_genomes_project 5 117948871 117948980 + Mir701 miRNA miRNA MGP_C57BL6NJ_T0004795.1 MGP_C57BL6NJ_G0004149.1 mouse_genomes_project 5 12993955 13013772 - Gm26918 antisense antisense MGP_C57BL6NJ_T0075614.1 MGP_C57BL6NJ_G0030647.1 mouse_genomes_project 5 147093849 147105749 - MGP_C57BL6NJ_P0075614 Trim56 protein_coding protein_coding MGP_C57BL6NJ_T0075615.1 MGP_C57BL6NJ_G0030647.1 mouse_genomes_project 5 147103565 147105751 - MGP_C57BL6NJ_P0075615 Trim56 protein_coding protein_coding MGP_C57BL6NJ_T0075998.1 MGP_C57BL6NJ_G0030724.1 mouse_genomes_project 5 150189432 150195838 - MGP_C57BL6NJ_P0075998 Psmg3 protein_coding protein_coding MGP_C57BL6NJ_T0075999.1 MGP_C57BL6NJ_G0030724.1 mouse_genomes_project 5 150189453 150195796 - MGP_C57BL6NJ_P0075999 Psmg3 protein_coding protein_coding MGP_C57BL6NJ_T0076000.1 MGP_C57BL6NJ_G0030724.1 mouse_genomes_project 5 150193427 150195828 - Psmg3 protein_coding retained_intron MGP_C57BL6NJ_T0071353.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058478 31059985 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071354.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058493 31059985 + MGP_C57BL6NJ_P0071354 Krtcap3 protein_coding protein_coding MGP_C57BL6NJ_T0071355.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058503 31059679 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071356.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058509 31059990 + MGP_C57BL6NJ_P0071356 Krtcap3 protein_coding protein_coding MGP_C57BL6NJ_T0071357.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058512 31059985 + MGP_C57BL6NJ_P0071357 Krtcap3 protein_coding protein_coding MGP_C57BL6NJ_T0071358.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058549 31059486 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071359.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31058714 31059784 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071360.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31059123 31059987 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071361.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31059267 31059985 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0071362.1 MGP_C57BL6NJ_G0029851.1 mouse_genomes_project 5 31059342 31059985 + Krtcap3 protein_coding retained_intron MGP_C57BL6NJ_T0100424.1 MGP_C57BL6NJ_G0038470.1 mouse_genomes_project 5 18944670 18944774 + Gm23570 snRNA snRNA MGP_C57BL6NJ_T0010986.1 MGP_C57BL6NJ_G0009071.1 mouse_genomes_project 5 149665830 149665926 - Mir339 miRNA miRNA MGP_C57BL6NJ_T0001688.1 MGP_C57BL6NJ_G0001584.1 mouse_genomes_project 5 47633730 47635584 + TEC TEC MGP_C57BL6NJ_T0001690.1 MGP_C57BL6NJ_G0001586.1 mouse_genomes_project 5 49053820 49055433 + TEC TEC MGP_C57BL6NJ_T0075142.1 MGP_C57BL6NJ_G0030566.1 mouse_genomes_project 5 139137434 139140176 + MGP_C57BL6NJ_P0075142 Nupr1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075143.1 MGP_C57BL6NJ_G0030566.1 mouse_genomes_project 5 139137436 139142713 + MGP_C57BL6NJ_P0075143 Nupr1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075144.1 MGP_C57BL6NJ_G0030566.1 mouse_genomes_project 5 139137462 139139289 + MGP_C57BL6NJ_P0075144 Nupr1l protein_coding protein_coding MGP_C57BL6NJ_T0075145.1 MGP_C57BL6NJ_G0030566.1 mouse_genomes_project 5 139139864 139140176 + Nupr1l protein_coding processed_transcript MGP_C57BL6NJ_T0071895.1 MGP_C57BL6NJ_G0029935.1 mouse_genomes_project 5 38147603 38151702 - MGP_C57BL6NJ_P0071895 Msx1 protein_coding protein_coding MGP_C57BL6NJ_T0071896.1 MGP_C57BL6NJ_G0029935.1 mouse_genomes_project 5 38149821 38151701 - Msx1 protein_coding retained_intron MGP_C57BL6NJ_T0011868.1 MGP_C57BL6NJ_G0009953.1 mouse_genomes_project 5 118302805 118302965 - Gm27680 misc_RNA misc_RNA MGP_C57BL6NJ_T0075718.1 MGP_C57BL6NJ_G0030665.1 mouse_genomes_project 5 147644801 147665605 - MGP_C57BL6NJ_P0075718 Fbxo24 protein_coding protein_coding MGP_C57BL6NJ_T0075719.1 MGP_C57BL6NJ_G0030665.1 mouse_genomes_project 5 147644801 147661730 - MGP_C57BL6NJ_P0075719 Fbxo24 protein_coding protein_coding MGP_C57BL6NJ_T0075720.1 MGP_C57BL6NJ_G0030665.1 mouse_genomes_project 5 147644804 147665559 - MGP_C57BL6NJ_P0075720 Fbxo24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001849.1 MGP_C57BL6NJ_G0001742.1 mouse_genomes_project 5 96617228 96618050 - TEC TEC MGP_C57BL6NJ_T0070839.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22563853 22619747 + MGP_C57BL6NJ_P0070839 Kmt2e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070840.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22564124 22637071 + MGP_C57BL6NJ_P0070840 Kmt2e protein_coding protein_coding MGP_C57BL6NJ_T0070841.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22609417 22618798 + Kmt2e protein_coding processed_transcript MGP_C57BL6NJ_T0070842.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22618847 22630436 + MGP_C57BL6NJ_P0070842 Kmt2e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070843.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22618895 22636861 + MGP_C57BL6NJ_P0070843 Kmt2e protein_coding protein_coding MGP_C57BL6NJ_T0070844.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22626662 22634715 + MGP_C57BL6NJ_P0070844 Kmt2e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070845.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22627199 22630586 + Kmt2e protein_coding retained_intron MGP_C57BL6NJ_T0070846.1 MGP_C57BL6NJ_G0029759.1 mouse_genomes_project 5 22632496 22634758 + MGP_C57BL6NJ_P0070846 Kmt2e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0004833.1 MGP_C57BL6NJ_G0004181.1 mouse_genomes_project 5 37126343 37129628 - Ppp2r2cos antisense antisense MGP_C57BL6NJ_T0072519.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75202925 75431880 - MGP_C57BL6NJ_P0072519 Corin protein_coding protein_coding MGP_C57BL6NJ_T0072520.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75202926 75431615 - MGP_C57BL6NJ_P0072520 Corin protein_coding protein_coding MGP_C57BL6NJ_T0072521.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75204386 75431840 - MGP_C57BL6NJ_P0072521 Corin protein_coding protein_coding MGP_C57BL6NJ_T0072522.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75204386 75431846 - MGP_C57BL6NJ_P0072522 Corin protein_coding protein_coding MGP_C57BL6NJ_T0072523.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75204398 75431846 - MGP_C57BL6NJ_P0072523 Corin protein_coding protein_coding MGP_C57BL6NJ_T0072524.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75264704 75271824 - Corin protein_coding retained_intron MGP_C57BL6NJ_T0072525.1 MGP_C57BL6NJ_G0030042.1 mouse_genomes_project 5 75269508 75293387 - Corin protein_coding processed_transcript MGP_C57BL6NJ_T0005054.1 MGP_C57BL6NJ_G0004336.1 mouse_genomes_project 5 160806503 160811620 - Gm19719 antisense antisense MGP_C57BL6NJ_T0008336.1 MGP_C57BL6NJ_G0006793.1 mouse_genomes_project 5 66947666 66950727 - Gm26761 lincRNA lincRNA MGP_C57BL6NJ_T0073994.1 MGP_C57BL6NJ_G0030363.1 mouse_genomes_project 5 121379445 121500298 + MGP_C57BL6NJ_P0073994 Acacb protein_coding protein_coding MGP_C57BL6NJ_T0073995.1 MGP_C57BL6NJ_G0030363.1 mouse_genomes_project 5 121405828 121500292 + MGP_C57BL6NJ_P0073995 Acacb protein_coding protein_coding MGP_C57BL6NJ_T0073996.1 MGP_C57BL6NJ_G0030363.1 mouse_genomes_project 5 121417277 121433251 + MGP_C57BL6NJ_P0073996 Acacb protein_coding protein_coding MGP_C57BL6NJ_T0073997.1 MGP_C57BL6NJ_G0030363.1 mouse_genomes_project 5 121444113 121500296 + Acacb protein_coding retained_intron MGP_C57BL6NJ_T0073998.1 MGP_C57BL6NJ_G0030363.1 mouse_genomes_project 5 121497869 121498495 + Acacb protein_coding retained_intron MGP_C57BL6NJ_T0099463.1 MGP_C57BL6NJ_G0037520.1 mouse_genomes_project 5 30033948 30034393 + Gm43755 sense_intronic sense_intronic MGP_C57BL6NJ_T0073426.1 MGP_C57BL6NJ_G0030244.1 mouse_genomes_project 5 110331054 110342612 + MGP_C57BL6NJ_P0073426 Mepe protein_coding protein_coding MGP_C57BL6NJ_T0018601.1 MGP_C57BL6NJ_G0015987.1 mouse_genomes_project 5 36836856 36866282 - Gm42936 processed_transcript processed_transcript MGP_C57BL6NJ_T0070959.1 MGP_C57BL6NJ_G0029778.1 mouse_genomes_project 5 23769048 23776807 - MGP_C57BL6NJ_P0070959 Asb10 protein_coding protein_coding MGP_C57BL6NJ_T0070960.1 MGP_C57BL6NJ_G0029778.1 mouse_genomes_project 5 23769982 23777328 - MGP_C57BL6NJ_P0070960 Asb10 protein_coding protein_coding MGP_C57BL6NJ_T0070961.1 MGP_C57BL6NJ_G0029778.1 mouse_genomes_project 5 23770000 23776942 - MGP_C57BL6NJ_P0070961 Asb10 protein_coding protein_coding MGP_C57BL6NJ_T0072885.1 MGP_C57BL6NJ_G0030116.1 mouse_genomes_project 5 91867313 91883396 - MGP_C57BL6NJ_P0072885 Ugt2a3 protein_coding protein_coding MGP_C57BL6NJ_T0015558.1 MGP_C57BL6NJ_G0013603.1 mouse_genomes_project 5 145504134 145504991 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001864.1 MGP_C57BL6NJ_G0001757.1 mouse_genomes_project 5 103897654 103900388 + TEC TEC MGP_C57BL6NJ_T0010951.1 MGP_C57BL6NJ_G0009036.1 mouse_genomes_project 5 110307217 110307327 + Gm23616 miRNA miRNA MGP_C57BL6NJ_T0076103.1 MGP_C57BL6NJ_G0030749.1 mouse_genomes_project 5 153561702 153591216 - MGP_C57BL6NJ_P0076103 Fbxl18 protein_coding protein_coding MGP_C57BL6NJ_T0076104.1 MGP_C57BL6NJ_G0030749.1 mouse_genomes_project 5 153566498 153567607 - Fbxl18 protein_coding retained_intron MGP_C57BL6NJ_T0076105.1 MGP_C57BL6NJ_G0030749.1 mouse_genomes_project 5 153566511 153591033 - MGP_C57BL6NJ_P0076105 Fbxl18 protein_coding protein_coding MGP_C57BL6NJ_T0076106.1 MGP_C57BL6NJ_G0030749.1 mouse_genomes_project 5 153566774 153567216 - Fbxl18 protein_coding processed_transcript MGP_C57BL6NJ_T0076107.1 MGP_C57BL6NJ_G0030749.1 mouse_genomes_project 5 153577014 153591216 - Fbxl18 protein_coding retained_intron MGP_C57BL6NJ_T0072563.1 MGP_C57BL6NJ_G0030049.1 mouse_genomes_project 5 75865330 75933893 + MGP_C57BL6NJ_P0072563 Slain2 protein_coding protein_coding MGP_C57BL6NJ_T0072564.1 MGP_C57BL6NJ_G0030049.1 mouse_genomes_project 5 75865395 75933875 + MGP_C57BL6NJ_P0072564 Slain2 protein_coding protein_coding MGP_C57BL6NJ_T0072565.1 MGP_C57BL6NJ_G0030049.1 mouse_genomes_project 5 75865442 75869512 + Slain2 protein_coding retained_intron MGP_C57BL6NJ_T0072566.1 MGP_C57BL6NJ_G0030049.1 mouse_genomes_project 5 75865694 75911303 + MGP_C57BL6NJ_P0072566 Slain2 protein_coding protein_coding MGP_C57BL6NJ_T0072567.1 MGP_C57BL6NJ_G0030049.1 mouse_genomes_project 5 75901639 75929766 + Slain2 protein_coding retained_intron MGP_C57BL6NJ_T0076069.1 MGP_C57BL6NJ_G0030741.1 mouse_genomes_project 5 153042445 153060510 + MGP_C57BL6NJ_P0076069 Foxk1 protein_coding protein_coding MGP_C57BL6NJ_T0076070.1 MGP_C57BL6NJ_G0030741.1 mouse_genomes_project 5 153042448 153109075 + MGP_C57BL6NJ_P0076070 Foxk1 protein_coding protein_coding MGP_C57BL6NJ_T0071668.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707136 34768331 + MGP_C57BL6NJ_P0071668 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071669.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707237 34741861 + MGP_C57BL6NJ_P0071669 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071670.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707241 34741861 + MGP_C57BL6NJ_P0071670 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071671.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707276 34737593 + Add1 protein_coding processed_transcript MGP_C57BL6NJ_T0071672.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707335 34768328 + MGP_C57BL6NJ_P0071672 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071673.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707345 34768331 + MGP_C57BL6NJ_P0071673 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071674.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34707514 34768317 + MGP_C57BL6NJ_P0071674 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071675.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34732307 34735081 + Add1 protein_coding retained_intron MGP_C57BL6NJ_T0071676.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34737309 34766839 + MGP_C57BL6NJ_P0071676 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071677.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34750308 34761342 + MGP_C57BL6NJ_P0071677 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071678.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34752686 34756512 + Add1 protein_coding retained_intron MGP_C57BL6NJ_T0071679.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34752827 34766654 + MGP_C57BL6NJ_P0071679 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071680.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34755414 34768331 + MGP_C57BL6NJ_P0071680 Add1 protein_coding protein_coding MGP_C57BL6NJ_T0071681.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34755909 34766764 + Add1 protein_coding retained_intron MGP_C57BL6NJ_T0071682.1 MGP_C57BL6NJ_G0029898.1 mouse_genomes_project 5 34756031 34764766 + Add1 protein_coding retained_intron MGP_C57BL6NJ_T0076065.1 MGP_C57BL6NJ_G0030740.1 mouse_genomes_project 5 151807974 152830209 + MGP_C57BL6NJ_P0076065 Sdk1 protein_coding protein_coding MGP_C57BL6NJ_T0076066.1 MGP_C57BL6NJ_G0030740.1 mouse_genomes_project 5 151808402 152166117 + Sdk1 protein_coding retained_intron MGP_C57BL6NJ_T0076067.1 MGP_C57BL6NJ_G0030740.1 mouse_genomes_project 5 151941201 152559148 + Sdk1 protein_coding retained_intron MGP_C57BL6NJ_T0076068.1 MGP_C57BL6NJ_G0030740.1 mouse_genomes_project 5 152455734 152827817 + MGP_C57BL6NJ_P0076068 Sdk1 protein_coding protein_coding MGP_C57BL6NJ_T0001903.1 MGP_C57BL6NJ_G0001796.1 mouse_genomes_project 5 120252058 120253944 - TEC TEC MGP_C57BL6NJ_T0074116.1 MGP_C57BL6NJ_G0030386.1 mouse_genomes_project 5 122474951 122475558 - MGP_C57BL6NJ_P0074116 Gm10401 protein_coding protein_coding MGP_C57BL6NJ_T0004821.1 MGP_C57BL6NJ_G0004169.1 mouse_genomes_project 5 32200635 32236171 - Gm36840 antisense antisense MGP_C57BL6NJ_T0073421.1 MGP_C57BL6NJ_G0030240.1 mouse_genomes_project 5 110073258 110118178 - MGP_C57BL6NJ_P0073421 Sparcl1 protein_coding protein_coding MGP_C57BL6NJ_T0073422.1 MGP_C57BL6NJ_G0030240.1 mouse_genomes_project 5 110090079 110117884 - MGP_C57BL6NJ_P0073422 Sparcl1 protein_coding protein_coding MGP_C57BL6NJ_T0010972.1 MGP_C57BL6NJ_G0009057.1 mouse_genomes_project 5 144210353 144210392 + Mir7228 miRNA miRNA MGP_C57BL6NJ_T0071654.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34624702 34643102 - MGP_C57BL6NJ_P0071654 Tnip2 protein_coding protein_coding MGP_C57BL6NJ_T0071655.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34624702 34643074 - MGP_C57BL6NJ_P0071655 Tnip2 protein_coding protein_coding MGP_C57BL6NJ_T0071656.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34624745 34643049 - MGP_C57BL6NJ_P0071656 Tnip2 protein_coding protein_coding MGP_C57BL6NJ_T0071657.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34628220 34630234 - Tnip2 protein_coding retained_intron MGP_C57BL6NJ_T0071658.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34629787 34642960 - Tnip2 protein_coding retained_intron MGP_C57BL6NJ_T0071659.1 MGP_C57BL6NJ_G0029896.1 mouse_genomes_project 5 34631901 34642771 - Tnip2 protein_coding retained_intron MGP_C57BL6NJ_T0072570.1 MGP_C57BL6NJ_G0030052.1 mouse_genomes_project 5 75970941 76001769 + MGP_C57BL6NJ_P0072570 Gm5868 protein_coding protein_coding MGP_C57BL6NJ_T0015415.1 MGP_C57BL6NJ_G0013460.1 mouse_genomes_project 5 76505767 76506777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073835.1 MGP_C57BL6NJ_G0030330.1 mouse_genomes_project 5 119304939 119310966 - MGP_C57BL6NJ_P0073835 Cryba4 protein_coding protein_coding MGP_C57BL6NJ_T0073836.1 MGP_C57BL6NJ_G0030330.1 mouse_genomes_project 5 119304940 119309610 - MGP_C57BL6NJ_P0073836 Cryba4 protein_coding protein_coding MGP_C57BL6NJ_T0073837.1 MGP_C57BL6NJ_G0030330.1 mouse_genomes_project 5 119304979 119310250 - MGP_C57BL6NJ_P0073837 Cryba4 protein_coding protein_coding MGP_C57BL6NJ_T0015561.1 MGP_C57BL6NJ_G0013606.1 mouse_genomes_project 5 146851560 146851951 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001633.1 MGP_C57BL6NJ_G0001530.1 mouse_genomes_project 5 31998042 32000928 - TEC TEC MGP_C57BL6NJ_T0001634.1 MGP_C57BL6NJ_G0001530.1 mouse_genomes_project 5 31998042 32000931 - TEC TEC MGP_C57BL6NJ_T0073469.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112270867 112309045 + MGP_C57BL6NJ_P0073469 Zfp326 protein_coding protein_coding MGP_C57BL6NJ_T0073470.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112270870 112310083 + Zfp326 protein_coding retained_intron MGP_C57BL6NJ_T0073471.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112270870 112282332 + Zfp326 protein_coding retained_intron MGP_C57BL6NJ_T0073472.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112270870 112310083 + MGP_C57BL6NJ_P0073472 Zfp326 protein_coding protein_coding MGP_C57BL6NJ_T0073473.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112270878 112309442 + MGP_C57BL6NJ_P0073473 Zfp326 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073474.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112271243 112280495 + Zfp326 protein_coding processed_transcript MGP_C57BL6NJ_T0073475.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112273072 112301839 + Zfp326 protein_coding retained_intron MGP_C57BL6NJ_T0073476.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112285244 112290806 + Zfp326 protein_coding retained_intron MGP_C57BL6NJ_T0073477.1 MGP_C57BL6NJ_G0030258.1 mouse_genomes_project 5 112299178 112302252 + Zfp326 protein_coding retained_intron MGP_C57BL6NJ_T0076323.1 MGP_C57BL6NJ_G0030793.1 mouse_genomes_project 5 156117123 156123920 - MGP_C57BL6NJ_P0076323 Zkscan14 protein_coding protein_coding MGP_C57BL6NJ_T0076324.1 MGP_C57BL6NJ_G0030793.1 mouse_genomes_project 5 156117800 156123909 - MGP_C57BL6NJ_P0076324 Zkscan14 protein_coding protein_coding MGP_C57BL6NJ_T0076325.1 MGP_C57BL6NJ_G0030793.1 mouse_genomes_project 5 156121677 156123920 - MGP_C57BL6NJ_P0076325 Zkscan14 protein_coding protein_coding MGP_C57BL6NJ_T0015308.1 MGP_C57BL6NJ_G0013353.1 mouse_genomes_project 5 27499801 27502718 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072886.1 MGP_C57BL6NJ_G0030117.1 mouse_genomes_project 5 92081325 92107372 - MGP_C57BL6NJ_P0072886 Sult1b1 protein_coding protein_coding MGP_C57BL6NJ_T0072887.1 MGP_C57BL6NJ_G0030117.1 mouse_genomes_project 5 92081352 92105411 - MGP_C57BL6NJ_P0072887 Sult1b1 protein_coding protein_coding MGP_C57BL6NJ_T0072888.1 MGP_C57BL6NJ_G0030117.1 mouse_genomes_project 5 92082675 92104335 - MGP_C57BL6NJ_P0072888 Sult1b1 protein_coding protein_coding MGP_C57BL6NJ_T0015269.1 MGP_C57BL6NJ_G0013314.1 mouse_genomes_project 5 19686564 19686939 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073648.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115297961 115312080 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073649.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115297961 115322252 - MGP_C57BL6NJ_P0073649 Dgkq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073650.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115297961 115312080 - MGP_C57BL6NJ_P0073650 Dgkq protein_coding protein_coding MGP_C57BL6NJ_T0073651.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115297961 115312080 - MGP_C57BL6NJ_P0073651 Dgkq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073652.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115297961 115312080 - MGP_C57BL6NJ_P0073652 Dgkq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073653.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115298315 115312080 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073654.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115298315 115304917 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073655.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115298542 115301196 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073656.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115302125 115304761 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073657.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115304761 115306402 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0073658.1 MGP_C57BL6NJ_G0030291.1 mouse_genomes_project 5 115305812 115307266 - Dgkq protein_coding retained_intron MGP_C57BL6NJ_T0076202.1 MGP_C57BL6NJ_G0030770.1 mouse_genomes_project 5 154667488 154674632 - MGP_C57BL6NJ_P0076202 Aimp2 protein_coding protein_coding MGP_C57BL6NJ_T0076203.1 MGP_C57BL6NJ_G0030770.1 mouse_genomes_project 5 154667488 154674624 - MGP_C57BL6NJ_P0076203 Aimp2 protein_coding protein_coding MGP_C57BL6NJ_T0076204.1 MGP_C57BL6NJ_G0030770.1 mouse_genomes_project 5 154670872 154674569 - Aimp2 protein_coding retained_intron MGP_C57BL6NJ_T0076205.1 MGP_C57BL6NJ_G0030770.1 mouse_genomes_project 5 154671157 154674573 - Aimp2 protein_coding retained_intron MGP_C57BL6NJ_T0072316.1 MGP_C57BL6NJ_G0030010.1 mouse_genomes_project 5 67745103 67816120 - MGP_C57BL6NJ_P0072316 Gm43552 protein_coding protein_coding MGP_C57BL6NJ_T0004810.1 MGP_C57BL6NJ_G0004161.1 mouse_genomes_project 5 24180501 24186035 + Prkag2os1 antisense antisense MGP_C57BL6NJ_T0015444.1 MGP_C57BL6NJ_G0013489.1 mouse_genomes_project 5 92179125 92179534 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001957.1 MGP_C57BL6NJ_G0001850.1 mouse_genomes_project 5 132375977 132377316 - TEC TEC MGP_C57BL6NJ_T0015429.1 MGP_C57BL6NJ_G0013474.1 mouse_genomes_project 5 83148651 83148669 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015314.1 MGP_C57BL6NJ_G0013359.1 mouse_genomes_project 5 29467322 29468542 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075976.1 MGP_C57BL6NJ_G0030719.1 mouse_genomes_project 5 150055449 150093429 - MGP_C57BL6NJ_P0075976 Micall2 protein_coding protein_coding MGP_C57BL6NJ_T0075977.1 MGP_C57BL6NJ_G0030719.1 mouse_genomes_project 5 150055647 150061373 - Micall2 protein_coding retained_intron MGP_C57BL6NJ_T0075978.1 MGP_C57BL6NJ_G0030719.1 mouse_genomes_project 5 150061280 150062765 - MGP_C57BL6NJ_P0075978 Micall2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074096.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122283850 122300587 + MGP_C57BL6NJ_P0074096 Oasl1 protein_coding protein_coding MGP_C57BL6NJ_T0074097.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122283874 122300590 + MGP_C57BL6NJ_P0074097 Oasl1 protein_coding protein_coding MGP_C57BL6NJ_T0074098.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122284032 122298631 + Oasl1 protein_coding processed_transcript MGP_C57BL6NJ_T0074099.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122284045 122298723 + Oasl1 protein_coding processed_transcript MGP_C57BL6NJ_T0074100.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122290459 122296023 + Oasl1 protein_coding retained_intron MGP_C57BL6NJ_T0074101.1 MGP_C57BL6NJ_G0030382.1 mouse_genomes_project 5 122298680 122300362 + Oasl1 protein_coding processed_transcript MGP_C57BL6NJ_T0074499.1 MGP_C57BL6NJ_G0030464.1 mouse_genomes_project 5 129939177 129973495 - MGP_C57BL6NJ_P0074499 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074500.1 MGP_C57BL6NJ_G0030464.1 mouse_genomes_project 5 129954742 129961090 - protein_coding processed_transcript MGP_C57BL6NJ_T0001606.1 MGP_C57BL6NJ_G0001505.1 mouse_genomes_project 5 20956942 20958835 - TEC TEC MGP_C57BL6NJ_T0071911.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38539254 38555699 - Zbtb49 protein_coding processed_transcript MGP_C57BL6NJ_T0071912.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38549599 38569973 - MGP_C57BL6NJ_P0071912 Zbtb49 protein_coding protein_coding MGP_C57BL6NJ_T0071913.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38549765 38569929 - MGP_C57BL6NJ_P0071913 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071914.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38549768 38569941 - MGP_C57BL6NJ_P0071914 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071915.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38550153 38569943 - MGP_C57BL6NJ_P0071915 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071916.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38550153 38569941 - MGP_C57BL6NJ_P0071916 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071917.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38552767 38553317 - MGP_C57BL6NJ_P0071917 Zbtb49 protein_coding protein_coding MGP_C57BL6NJ_T0071918.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38553268 38563068 - MGP_C57BL6NJ_P0071918 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071919.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38553324 38569947 - MGP_C57BL6NJ_P0071919 Zbtb49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071920.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38561553 38569970 - MGP_C57BL6NJ_P0071920 Zbtb49 protein_coding protein_coding MGP_C57BL6NJ_T0071921.1 MGP_C57BL6NJ_G0029938.1 mouse_genomes_project 5 38564894 38569940 - Zbtb49 protein_coding retained_intron MGP_C57BL6NJ_T0002007.1 MGP_C57BL6NJ_G0001899.1 mouse_genomes_project 5 141920111 141923953 - TEC TEC MGP_C57BL6NJ_T0100451.1 MGP_C57BL6NJ_G0038497.1 mouse_genomes_project 5 72944971 72945033 - Gm23067 snRNA snRNA MGP_C57BL6NJ_T0015543.1 MGP_C57BL6NJ_G0013588.1 mouse_genomes_project 5 130767048 130767666 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071870.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37516574 37545773 + MGP_C57BL6NJ_P0071870 Crmp1 protein_coding protein_coding MGP_C57BL6NJ_T0071871.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37516714 37570815 + MGP_C57BL6NJ_P0071871 Crmp1 protein_coding protein_coding MGP_C57BL6NJ_T0071872.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37517368 37555147 + MGP_C57BL6NJ_P0071872 Crmp1 protein_coding protein_coding MGP_C57BL6NJ_T0071873.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37520398 37570783 + MGP_C57BL6NJ_P0071873 Crmp1 protein_coding protein_coding MGP_C57BL6NJ_T0071874.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37520479 37542542 + Crmp1 protein_coding retained_intron MGP_C57BL6NJ_T0071875.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37523528 37555886 + MGP_C57BL6NJ_P0071875 Crmp1 protein_coding protein_coding MGP_C57BL6NJ_T0071876.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37545728 37553738 + Crmp1 protein_coding retained_intron MGP_C57BL6NJ_T0071877.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37556761 37560181 + Crmp1 protein_coding retained_intron MGP_C57BL6NJ_T0071878.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37557421 37559689 + Crmp1 protein_coding retained_intron MGP_C57BL6NJ_T0071879.1 MGP_C57BL6NJ_G0029930.1 mouse_genomes_project 5 37560882 37565344 + Crmp1 protein_coding retained_intron MGP_C57BL6NJ_T0001919.1 MGP_C57BL6NJ_G0001812.1 mouse_genomes_project 5 124067347 124068690 - TEC TEC MGP_C57BL6NJ_T0001908.1 MGP_C57BL6NJ_G0001801.1 mouse_genomes_project 5 121063575 121066896 + TEC TEC MGP_C57BL6NJ_T0075629.1 MGP_C57BL6NJ_G0030651.1 mouse_genomes_project 5 147290413 147291450 + MGP_C57BL6NJ_P0075629 Ufsp1 protein_coding protein_coding MGP_C57BL6NJ_T0073617.1 MGP_C57BL6NJ_G0030285.1 mouse_genomes_project 5 115046459 115047664 - MGP_C57BL6NJ_P0073617 Atp5k protein_coding protein_coding MGP_C57BL6NJ_T0073618.1 MGP_C57BL6NJ_G0030285.1 mouse_genomes_project 5 115046459 115047664 - MGP_C57BL6NJ_P0073618 Atp5k protein_coding protein_coding MGP_C57BL6NJ_T0073619.1 MGP_C57BL6NJ_G0030285.1 mouse_genomes_project 5 115046461 115047613 - Atp5k protein_coding retained_intron MGP_C57BL6NJ_T0099126.1 MGP_C57BL6NJ_G0037190.1 mouse_genomes_project 5 160193301 160193419 - n-R5s179 rRNA rRNA MGP_C57BL6NJ_T0072236.1 MGP_C57BL6NJ_G0029994.1 mouse_genomes_project 5 66006725 66101624 + MGP_C57BL6NJ_P0072236 0610040J01Rik protein_coding protein_coding MGP_C57BL6NJ_T0072237.1 MGP_C57BL6NJ_G0029994.1 mouse_genomes_project 5 66006882 66100566 + MGP_C57BL6NJ_P0072237 0610040J01Rik protein_coding protein_coding MGP_C57BL6NJ_T0072238.1 MGP_C57BL6NJ_G0029994.1 mouse_genomes_project 5 66078297 66100265 + MGP_C57BL6NJ_P0072238 0610040J01Rik protein_coding protein_coding MGP_C57BL6NJ_T0072239.1 MGP_C57BL6NJ_G0029994.1 mouse_genomes_project 5 66079464 66100528 + MGP_C57BL6NJ_P0072239 0610040J01Rik protein_coding protein_coding MGP_C57BL6NJ_T0001922.1 MGP_C57BL6NJ_G0001815.1 mouse_genomes_project 5 125211437 125212397 + TEC TEC MGP_C57BL6NJ_T0101728.1 MGP_C57BL6NJ_G0039774.1 mouse_genomes_project 5 36897569 36897693 + Gm25767 snoRNA snoRNA MGP_C57BL6NJ_T0008567.1 MGP_C57BL6NJ_G0006951.1 mouse_genomes_project 5 136093163 136093951 + Gm43475 lincRNA lincRNA MGP_C57BL6NJ_T0001951.1 MGP_C57BL6NJ_G0001844.1 mouse_genomes_project 5 131453769 131455348 - TEC TEC MGP_C57BL6NJ_T0076048.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210197 151227554 + MGP_C57BL6NJ_P0076048 Brat1 protein_coding protein_coding MGP_C57BL6NJ_T0076049.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210209 151227505 + MGP_C57BL6NJ_P0076049 Brat1 protein_coding protein_coding MGP_C57BL6NJ_T0076050.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210209 151227348 + MGP_C57BL6NJ_P0076050 Brat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076051.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210236 151224110 + Brat1 protein_coding retained_intron MGP_C57BL6NJ_T0076052.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210238 151223834 + Brat1 protein_coding retained_intron MGP_C57BL6NJ_T0076053.1 MGP_C57BL6NJ_G0030736.1 mouse_genomes_project 5 151210252 151227554 + MGP_C57BL6NJ_P0076053 Brat1 protein_coding protein_coding MGP_C57BL6NJ_T0074472.1 MGP_C57BL6NJ_G0030459.1 mouse_genomes_project 5 129768100 129771825 - MGP_C57BL6NJ_P0074472 Adam1a protein_coding protein_coding MGP_C57BL6NJ_T0008505.1 MGP_C57BL6NJ_G0006911.1 mouse_genomes_project 5 123845785 123851539 + B230112J18Rik lincRNA lincRNA MGP_C57BL6NJ_T0070640.1 MGP_C57BL6NJ_G0029719.1 mouse_genomes_project 5 6515580 6547859 - MGP_C57BL6NJ_P0070640 Crot protein_coding protein_coding MGP_C57BL6NJ_T0070641.1 MGP_C57BL6NJ_G0029719.1 mouse_genomes_project 5 6524031 6532649 - Crot protein_coding processed_transcript MGP_C57BL6NJ_T0070642.1 MGP_C57BL6NJ_G0029719.1 mouse_genomes_project 5 6536685 6547577 - Crot protein_coding retained_intron MGP_C57BL6NJ_T0008564.1 MGP_C57BL6NJ_G0006950.1 mouse_genomes_project 5 136006383 136023924 + 4933438B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008565.1 MGP_C57BL6NJ_G0006950.1 mouse_genomes_project 5 136009789 136078976 + 4933438B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008566.1 MGP_C57BL6NJ_G0006950.1 mouse_genomes_project 5 136009796 136023779 + 4933438B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0075355.1 MGP_C57BL6NJ_G0030599.1 mouse_genomes_project 5 144695815 144697074 + MGP_C57BL6NJ_P0075355 Cldn3 protein_coding protein_coding MGP_C57BL6NJ_T0010943.1 MGP_C57BL6NJ_G0009028.1 mouse_genomes_project 5 87542531 87542614 + Gm44303 miRNA miRNA MGP_C57BL6NJ_T0100468.1 MGP_C57BL6NJ_G0038514.1 mouse_genomes_project 5 101275108 101275215 + Gm25937 snRNA snRNA MGP_C57BL6NJ_T0015384.1 MGP_C57BL6NJ_G0013429.1 mouse_genomes_project 5 62506619 62507040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071922.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38569997 38580219 + MGP_C57BL6NJ_P0071922 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071923.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570035 38577431 + MGP_C57BL6NJ_P0071923 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071924.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570042 38580220 + MGP_C57BL6NJ_P0071924 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071925.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570044 38580504 + MGP_C57BL6NJ_P0071925 Lyar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071926.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570065 38575429 + MGP_C57BL6NJ_P0071926 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071927.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570069 38577615 + MGP_C57BL6NJ_P0071927 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071928.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38570095 38583821 + MGP_C57BL6NJ_P0071928 Lyar protein_coding protein_coding MGP_C57BL6NJ_T0071929.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38572480 38580199 + MGP_C57BL6NJ_P0071929 Lyar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071930.1 MGP_C57BL6NJ_G0029939.1 mouse_genomes_project 5 38574163 38575976 + Lyar protein_coding retained_intron MGP_C57BL6NJ_T0004902.1 MGP_C57BL6NJ_G0004233.1 mouse_genomes_project 5 105282284 105283511 + 4930405H06Rik antisense antisense MGP_C57BL6NJ_T0070983.1 MGP_C57BL6NJ_G0029783.1 mouse_genomes_project 5 23941877 23968174 + MGP_C57BL6NJ_P0070983 Nub1 protein_coding protein_coding MGP_C57BL6NJ_T0070984.1 MGP_C57BL6NJ_G0029783.1 mouse_genomes_project 5 23942169 23968176 + MGP_C57BL6NJ_P0070984 Nub1 protein_coding protein_coding MGP_C57BL6NJ_T0070985.1 MGP_C57BL6NJ_G0029783.1 mouse_genomes_project 5 23942332 23968174 + Nub1 protein_coding retained_intron MGP_C57BL6NJ_T0075447.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145465201 145538899 + MGP_C57BL6NJ_P0075447 Por protein_coding protein_coding MGP_C57BL6NJ_T0075448.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145469749 145486320 + Por protein_coding processed_transcript MGP_C57BL6NJ_T0075449.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145469753 145538355 + MGP_C57BL6NJ_P0075449 Por protein_coding protein_coding MGP_C57BL6NJ_T0075450.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145490356 145542564 + MGP_C57BL6NJ_P0075450 Por protein_coding protein_coding MGP_C57BL6NJ_T0075451.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145490478 145542564 + MGP_C57BL6NJ_P0075451 Por protein_coding protein_coding MGP_C57BL6NJ_T0075452.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145523242 145539116 + Por protein_coding retained_intron MGP_C57BL6NJ_T0075453.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145532952 145537479 + MGP_C57BL6NJ_P0075453 Por protein_coding protein_coding MGP_C57BL6NJ_T0075454.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145538787 145541153 + Por protein_coding retained_intron MGP_C57BL6NJ_T0075455.1 MGP_C57BL6NJ_G0030618.1 mouse_genomes_project 5 145540418 145541285 + Por protein_coding retained_intron MGP_C57BL6NJ_T0071023.1 MGP_C57BL6NJ_G0029792.1 mouse_genomes_project 5 24845327 24847288 + MGP_C57BL6NJ_P0071023 Cct8l1 protein_coding protein_coding MGP_C57BL6NJ_T0103211.1 MGP_C57BL6NJ_G0041005.1 mouse_genomes_project 5 115532409 115582799 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001840.1 MGP_C57BL6NJ_G0001733.1 mouse_genomes_project 5 79919962 79922389 - TEC TEC MGP_C57BL6NJ_T0015318.1 MGP_C57BL6NJ_G0013363.1 mouse_genomes_project 5 32187116 32187314 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073736.1 MGP_C57BL6NJ_G0030312.1 mouse_genomes_project 5 117149279 117161309 - MGP_C57BL6NJ_P0073736 Pgam5 protein_coding protein_coding MGP_C57BL6NJ_T0073737.1 MGP_C57BL6NJ_G0030312.1 mouse_genomes_project 5 117149304 117161283 - MGP_C57BL6NJ_P0073737 Pgam5 protein_coding protein_coding MGP_C57BL6NJ_T0073738.1 MGP_C57BL6NJ_G0030312.1 mouse_genomes_project 5 117156624 117157423 - Pgam5 protein_coding retained_intron MGP_C57BL6NJ_T0073739.1 MGP_C57BL6NJ_G0030312.1 mouse_genomes_project 5 117156969 117161250 - MGP_C57BL6NJ_P0073739 Pgam5 protein_coding protein_coding MGP_C57BL6NJ_T0076136.1 MGP_C57BL6NJ_G0030755.1 mouse_genomes_project 5 153955829 153969771 - MGP_C57BL6NJ_P0076136 Spdye4a protein_coding protein_coding MGP_C57BL6NJ_T0076137.1 MGP_C57BL6NJ_G0030755.1 mouse_genomes_project 5 153956103 153970753 - MGP_C57BL6NJ_P0076137 Spdye4a protein_coding protein_coding MGP_C57BL6NJ_T0076138.1 MGP_C57BL6NJ_G0030755.1 mouse_genomes_project 5 153958049 153970779 - MGP_C57BL6NJ_P0076138 Spdye4a protein_coding protein_coding MGP_C57BL6NJ_T0075075.1 MGP_C57BL6NJ_G0030553.1 mouse_genomes_project 5 138180966 138189196 + MGP_C57BL6NJ_P0075075 Ran protein_coding protein_coding MGP_C57BL6NJ_T0075076.1 MGP_C57BL6NJ_G0030553.1 mouse_genomes_project 5 138181099 138181686 + Ran protein_coding processed_transcript MGP_C57BL6NJ_T0075077.1 MGP_C57BL6NJ_G0030553.1 mouse_genomes_project 5 138181169 138189196 + MGP_C57BL6NJ_P0075077 Ran protein_coding protein_coding MGP_C57BL6NJ_T0008407.1 MGP_C57BL6NJ_G0006851.1 mouse_genomes_project 5 105912571 105919913 + 2310034O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0008408.1 MGP_C57BL6NJ_G0006851.1 mouse_genomes_project 5 105912587 105918605 + 2310034O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0070796.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20713538 20738035 + MGP_C57BL6NJ_P0070796 Pmpcb protein_coding protein_coding MGP_C57BL6NJ_T0070797.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20715446 20738030 + Pmpcb protein_coding retained_intron MGP_C57BL6NJ_T0070798.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20717186 20719375 + Pmpcb protein_coding retained_intron MGP_C57BL6NJ_T0070799.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20721159 20721959 + Pmpcb protein_coding retained_intron MGP_C57BL6NJ_T0070800.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20737396 20738024 + Pmpcb protein_coding retained_intron MGP_C57BL6NJ_T0070801.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20737522 20738030 + MGP_C57BL6NJ_P0070801 Pmpcb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070802.1 MGP_C57BL6NJ_G0029752.1 mouse_genomes_project 5 20737658 20738024 + Pmpcb protein_coding retained_intron MGP_C57BL6NJ_T0008387.1 MGP_C57BL6NJ_G0006835.1 mouse_genomes_project 5 102312202 102325990 + Gm42601 lincRNA lincRNA MGP_C57BL6NJ_T0099477.1 MGP_C57BL6NJ_G0037534.1 mouse_genomes_project 5 130883902 130887861 + Gm42829 sense_intronic sense_intronic MGP_C57BL6NJ_T0001905.1 MGP_C57BL6NJ_G0001798.1 mouse_genomes_project 5 120309006 120309927 - TEC TEC MGP_C57BL6NJ_T0076132.1 MGP_C57BL6NJ_G0030753.1 mouse_genomes_project 5 153903217 153907765 - Rbak protein_coding retained_intron MGP_C57BL6NJ_T0076133.1 MGP_C57BL6NJ_G0030753.1 mouse_genomes_project 5 153904191 153911823 - MGP_C57BL6NJ_P0076133 Rbak protein_coding unknown_likely_coding MGP_C57BL6NJ_T0076134.1 MGP_C57BL6NJ_G0030753.1 mouse_genomes_project 5 153909996 153911800 - Rbak protein_coding retained_intron MGP_C57BL6NJ_T0008660.1 MGP_C57BL6NJ_G0007020.1 mouse_genomes_project 5 162255129 162264037 - Gm43597 lincRNA lincRNA MGP_C57BL6NJ_T0008661.1 MGP_C57BL6NJ_G0007020.1 mouse_genomes_project 5 162255134 162264000 - Gm43597 lincRNA lincRNA MGP_C57BL6NJ_T0008662.1 MGP_C57BL6NJ_G0007020.1 mouse_genomes_project 5 162257096 162263917 - Gm43597 lincRNA lincRNA MGP_C57BL6NJ_T0072764.1 MGP_C57BL6NJ_G0030084.1 mouse_genomes_project 5 80323704 80374576 + MGP_C57BL6NJ_P0072764 Thegl protein_coding protein_coding MGP_C57BL6NJ_T0072765.1 MGP_C57BL6NJ_G0030084.1 mouse_genomes_project 5 80323704 80374583 + MGP_C57BL6NJ_P0072765 Thegl protein_coding protein_coding MGP_C57BL6NJ_T0072766.1 MGP_C57BL6NJ_G0030084.1 mouse_genomes_project 5 80350107 80360549 + MGP_C57BL6NJ_P0072766 Thegl protein_coding protein_coding MGP_C57BL6NJ_T0008440.1 MGP_C57BL6NJ_G0006873.1 mouse_genomes_project 5 113546521 113554708 + Gm43419 lincRNA lincRNA MGP_C57BL6NJ_T0008606.1 MGP_C57BL6NJ_G0006979.1 mouse_genomes_project 5 151102060 151102823 - Gm43703 lincRNA lincRNA MGP_C57BL6NJ_T0001636.1 MGP_C57BL6NJ_G0001532.1 mouse_genomes_project 5 32357335 32359570 + TEC TEC MGP_C57BL6NJ_T0103197.1 MGP_C57BL6NJ_G0040991.1 mouse_genomes_project 5 91341496 91344346 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0076010.1 MGP_C57BL6NJ_G0030728.1 mouse_genomes_project 5 150774808 150779033 - MGP_C57BL6NJ_P0076010 Mrm2 protein_coding protein_coding MGP_C57BL6NJ_T0075534.1 MGP_C57BL6NJ_G0030633.1 mouse_genomes_project 5 145996718 146001085 + MGP_C57BL6NJ_P0075534 Alkbh4 protein_coding protein_coding MGP_C57BL6NJ_T0075535.1 MGP_C57BL6NJ_G0030633.1 mouse_genomes_project 5 145996726 146002185 + MGP_C57BL6NJ_P0075535 Alkbh4 protein_coding protein_coding MGP_C57BL6NJ_T0075536.1 MGP_C57BL6NJ_G0030633.1 mouse_genomes_project 5 145996730 146001351 + MGP_C57BL6NJ_P0075536 Alkbh4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075537.1 MGP_C57BL6NJ_G0030633.1 mouse_genomes_project 5 145996774 146001076 + MGP_C57BL6NJ_P0075537 Alkbh4 protein_coding protein_coding MGP_C57BL6NJ_T0075538.1 MGP_C57BL6NJ_G0030633.1 mouse_genomes_project 5 145999353 146002188 + MGP_C57BL6NJ_P0075538 Alkbh4 protein_coding protein_coding MGP_C57BL6NJ_T0072859.1 MGP_C57BL6NJ_G0030103.1 mouse_genomes_project 5 91108096 91126848 - MGP_C57BL6NJ_P0072859 Tmprss11b protein_coding protein_coding MGP_C57BL6NJ_T0008590.1 MGP_C57BL6NJ_G0006966.1 mouse_genomes_project 5 145447528 145468156 - Gm43091 lincRNA lincRNA MGP_C57BL6NJ_T0073580.1 MGP_C57BL6NJ_G0030278.1 mouse_genomes_project 5 114468748 114551905 - MGP_C57BL6NJ_P0073580 Fam69a protein_coding protein_coding MGP_C57BL6NJ_T0073581.1 MGP_C57BL6NJ_G0030278.1 mouse_genomes_project 5 114470398 114551853 - MGP_C57BL6NJ_P0073581 Fam69a protein_coding protein_coding MGP_C57BL6NJ_T0073582.1 MGP_C57BL6NJ_G0030278.1 mouse_genomes_project 5 114475126 114535289 - MGP_C57BL6NJ_P0073582 Fam69a protein_coding protein_coding MGP_C57BL6NJ_T0074728.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131750715 131851234 + Psmd9 protein_coding processed_transcript MGP_C57BL6NJ_T0074735.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131839785 131856905 + Psmd9 protein_coding processed_transcript MGP_C57BL6NJ_T0074736.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131839785 131862835 + MGP_C57BL6NJ_P0074736 Psmd9 protein_coding protein_coding MGP_C57BL6NJ_T0074737.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131839853 131840627 + Psmd9 protein_coding retained_intron MGP_C57BL6NJ_T0074738.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131840542 131842483 + Psmd9 protein_coding TEC MGP_C57BL6NJ_T0074739.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131846242 131861231 + MGP_C57BL6NJ_P0074739 Psmd9 protein_coding protein_coding MGP_C57BL6NJ_T0074740.1 MGP_C57BL6NJ_G0030495.1 mouse_genomes_project 5 131853471 131861231 + MGP_C57BL6NJ_P0074740 Psmd9 protein_coding protein_coding MGP_C57BL6NJ_T0015530.1 MGP_C57BL6NJ_G0013575.1 mouse_genomes_project 5 122429789 122430161 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071028.1 MGP_C57BL6NJ_G0029794.1 mouse_genomes_project 5 25116736 25219215 + MGP_C57BL6NJ_P0071028 Actr3b protein_coding protein_coding MGP_C57BL6NJ_T0071029.1 MGP_C57BL6NJ_G0029794.1 mouse_genomes_project 5 25116820 25136347 + Actr3b protein_coding processed_transcript MGP_C57BL6NJ_T0075951.1 MGP_C57BL6NJ_G0030712.1 mouse_genomes_project 5 149646940 149648942 + Cyp2w1 protein_coding retained_intron MGP_C57BL6NJ_T0075952.1 MGP_C57BL6NJ_G0030712.1 mouse_genomes_project 5 149646940 149651353 + MGP_C57BL6NJ_P0075952 Cyp2w1 protein_coding protein_coding MGP_C57BL6NJ_T0075953.1 MGP_C57BL6NJ_G0030712.1 mouse_genomes_project 5 149648895 149650987 + MGP_C57BL6NJ_P0075953 Cyp2w1 protein_coding protein_coding MGP_C57BL6NJ_T0010930.1 MGP_C57BL6NJ_G0009015.1 mouse_genomes_project 5 66315427 66315505 - Gm23967 miRNA miRNA MGP_C57BL6NJ_T0015484.1 MGP_C57BL6NJ_G0013529.1 mouse_genomes_project 5 109173237 109173825 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100454.1 MGP_C57BL6NJ_G0038500.1 mouse_genomes_project 5 75336691 75336798 - Gm23712 snRNA snRNA MGP_C57BL6NJ_T0001662.1 MGP_C57BL6NJ_G0001558.1 mouse_genomes_project 5 44238981 44241087 + TEC TEC MGP_C57BL6NJ_T0072767.1 MGP_C57BL6NJ_G0030085.1 mouse_genomes_project 5 80401749 80414624 - MGP_C57BL6NJ_P0072767 Hopx protein_coding protein_coding MGP_C57BL6NJ_T0072768.1 MGP_C57BL6NJ_G0030085.1 mouse_genomes_project 5 80401749 80437564 - MGP_C57BL6NJ_P0072768 Hopx protein_coding protein_coding MGP_C57BL6NJ_T0072769.1 MGP_C57BL6NJ_G0030085.1 mouse_genomes_project 5 80401749 80414600 - MGP_C57BL6NJ_P0072769 Hopx protein_coding protein_coding MGP_C57BL6NJ_T0008375.1 MGP_C57BL6NJ_G0006823.1 mouse_genomes_project 5 91212935 91233780 - Gm43057 lincRNA lincRNA MGP_C57BL6NJ_T0015408.1 MGP_C57BL6NJ_G0013453.1 mouse_genomes_project 5 73335585 73336199 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073037.1 MGP_C57BL6NJ_G0030157.1 mouse_genomes_project 5 95531421 95532967 + MGP_C57BL6NJ_P0073037 Ppbp protein_coding protein_coding MGP_C57BL6NJ_T0075681.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579024 147588236 + MGP_C57BL6NJ_P0075681 Actl6b protein_coding protein_coding MGP_C57BL6NJ_T0075682.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579045 147579854 + Actl6b protein_coding retained_intron MGP_C57BL6NJ_T0075683.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579045 147591676 + MGP_C57BL6NJ_P0075683 Actl6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075684.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579046 147590810 + MGP_C57BL6NJ_P0075684 Actl6b protein_coding protein_coding MGP_C57BL6NJ_T0075685.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579062 147580540 + MGP_C57BL6NJ_P0075685 Actl6b protein_coding protein_coding MGP_C57BL6NJ_T0075686.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579064 147582164 + Actl6b protein_coding retained_intron MGP_C57BL6NJ_T0075687.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579064 147594589 + MGP_C57BL6NJ_P0075687 Actl6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075688.1 MGP_C57BL6NJ_G0030661.1 mouse_genomes_project 5 147579142 147594418 + MGP_C57BL6NJ_P0075688 Actl6b protein_coding protein_coding MGP_C57BL6NJ_T0101747.1 MGP_C57BL6NJ_G0039793.1 mouse_genomes_project 5 87820247 87820375 - Gm24792 snoRNA snoRNA MGP_C57BL6NJ_T0018631.1 MGP_C57BL6NJ_G0015997.1 mouse_genomes_project 5 77186873 77188077 + Dancr processed_transcript lincRNA MGP_C57BL6NJ_T0018632.1 MGP_C57BL6NJ_G0015997.1 mouse_genomes_project 5 77186879 77188077 + Dancr processed_transcript retained_intron MGP_C57BL6NJ_T0074601.1 MGP_C57BL6NJ_G0030478.1 mouse_genomes_project 5 130834778 130844807 - MGP_C57BL6NJ_P0074601 Fam216a protein_coding protein_coding MGP_C57BL6NJ_T0015509.1 MGP_C57BL6NJ_G0013554.1 mouse_genomes_project 5 115657411 115660510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015574.1 MGP_C57BL6NJ_G0013619.1 mouse_genomes_project 5 148736482 148737340 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001597.1 MGP_C57BL6NJ_G0001496.1 mouse_genomes_project 5 13305436 13307095 + TEC TEC MGP_C57BL6NJ_T0071852.1 MGP_C57BL6NJ_G0029928.1 mouse_genomes_project 5 37221476 37244545 - MGP_C57BL6NJ_P0071852 Wfs1 protein_coding protein_coding MGP_C57BL6NJ_T0071853.1 MGP_C57BL6NJ_G0029928.1 mouse_genomes_project 5 37221479 37244273 - MGP_C57BL6NJ_P0071853 Wfs1 protein_coding protein_coding MGP_C57BL6NJ_T0071854.1 MGP_C57BL6NJ_G0029928.1 mouse_genomes_project 5 37223873 37232329 - MGP_C57BL6NJ_P0071854 Wfs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001592.1 MGP_C57BL6NJ_G0001491.1 mouse_genomes_project 5 13038740 13043206 + TEC TEC MGP_C57BL6NJ_T0100419.1 MGP_C57BL6NJ_G0038465.1 mouse_genomes_project 5 3757257 3757350 + Gm24686 snRNA snRNA MGP_C57BL6NJ_T0015367.1 MGP_C57BL6NJ_G0013412.1 mouse_genomes_project 5 56959350 56960056 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070986.1 MGP_C57BL6NJ_G0029784.1 mouse_genomes_project 5 23969535 23993858 - MGP_C57BL6NJ_P0070986 Wdr86 protein_coding protein_coding MGP_C57BL6NJ_T0070987.1 MGP_C57BL6NJ_G0029784.1 mouse_genomes_project 5 23970062 23993811 - Wdr86 protein_coding retained_intron MGP_C57BL6NJ_T0070988.1 MGP_C57BL6NJ_G0029784.1 mouse_genomes_project 5 23970066 23971175 - Wdr86 protein_coding retained_intron MGP_C57BL6NJ_T0070989.1 MGP_C57BL6NJ_G0029784.1 mouse_genomes_project 5 23970435 23973379 - MGP_C57BL6NJ_P0070989 Wdr86 protein_coding protein_coding MGP_C57BL6NJ_T0015472.1 MGP_C57BL6NJ_G0013517.1 mouse_genomes_project 5 104022167 104022548 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102502.1 MGP_C57BL6NJ_G0040370.1 mouse_genomes_project 5 77468003 77469827 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0075736.1 MGP_C57BL6NJ_G0030669.1 mouse_genomes_project 5 147681135 147683628 - MGP_C57BL6NJ_P0075736 Irs3 protein_coding protein_coding MGP_C57BL6NJ_T0075737.1 MGP_C57BL6NJ_G0030669.1 mouse_genomes_project 5 147681136 147683805 - MGP_C57BL6NJ_P0075737 Irs3 protein_coding protein_coding MGP_C57BL6NJ_T0010938.1 MGP_C57BL6NJ_G0009023.1 mouse_genomes_project 5 78327846 78327920 + Mir7025 miRNA miRNA MGP_C57BL6NJ_T0015267.1 MGP_C57BL6NJ_G0013312.1 mouse_genomes_project 5 19110504 19110844 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101726.1 MGP_C57BL6NJ_G0039772.1 mouse_genomes_project 5 21388097 21388211 - Gm25459 snoRNA snoRNA MGP_C57BL6NJ_T0070962.1 MGP_C57BL6NJ_G0029779.1 mouse_genomes_project 5 23779781 23791744 - MGP_C57BL6NJ_P0070962 4931409K22Rik protein_coding protein_coding MGP_C57BL6NJ_T0070963.1 MGP_C57BL6NJ_G0029779.1 mouse_genomes_project 5 23779781 23791744 - MGP_C57BL6NJ_P0070963 4931409K22Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070964.1 MGP_C57BL6NJ_G0029779.1 mouse_genomes_project 5 23779797 23788967 - 4931409K22Rik protein_coding retained_intron MGP_C57BL6NJ_T0070965.1 MGP_C57BL6NJ_G0029779.1 mouse_genomes_project 5 23788968 23791803 - MGP_C57BL6NJ_P0070965 4931409K22Rik protein_coding protein_coding MGP_C57BL6NJ_T0070966.1 MGP_C57BL6NJ_G0029779.1 mouse_genomes_project 5 23788977 23793143 - 4931409K22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0076003.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150422707 150768713 - MGP_C57BL6NJ_P0076003 Mad1l1 protein_coding protein_coding MGP_C57BL6NJ_T0076004.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150422707 150768711 - MGP_C57BL6NJ_P0076004 Mad1l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076005.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150422712 150610845 - Mad1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0076006.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150507164 150533957 - Mad1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0076007.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150565805 150610586 - Mad1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0076008.1 MGP_C57BL6NJ_G0030726.1 mouse_genomes_project 5 150601126 150706113 - Mad1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0076516.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161069482 161160735 + MGP_C57BL6NJ_P0076516 Wdr95 protein_coding protein_coding MGP_C57BL6NJ_T0076517.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161070488 161108277 + Wdr95 protein_coding retained_intron MGP_C57BL6NJ_T0076518.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161070494 161147825 + MGP_C57BL6NJ_P0076518 Wdr95 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076519.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161070536 161109372 + Wdr95 protein_coding retained_intron MGP_C57BL6NJ_T0076520.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161070536 161160735 + MGP_C57BL6NJ_P0076520 Wdr95 protein_coding protein_coding MGP_C57BL6NJ_T0076521.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161077429 161108277 + Wdr95 protein_coding retained_intron MGP_C57BL6NJ_T0076522.1 MGP_C57BL6NJ_G0030841.1 mouse_genomes_project 5 161129779 161136194 + Wdr95 protein_coding retained_intron MGP_C57BL6NJ_T0015398.1 MGP_C57BL6NJ_G0013443.1 mouse_genomes_project 5 66481108 66481766 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015437.1 MGP_C57BL6NJ_G0013482.1 mouse_genomes_project 5 91449260 91450849 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010994.1 MGP_C57BL6NJ_G0009079.1 mouse_genomes_project 5 160766611 160766689 - miRNA miRNA MGP_C57BL6NJ_T0071991.1 MGP_C57BL6NJ_G0029953.1 mouse_genomes_project 5 44179587 44286097 + MGP_C57BL6NJ_P0071991 C1qtnf7 protein_coding protein_coding MGP_C57BL6NJ_T0071992.1 MGP_C57BL6NJ_G0029953.1 mouse_genomes_project 5 44179811 44273540 + MGP_C57BL6NJ_P0071992 C1qtnf7 protein_coding protein_coding MGP_C57BL6NJ_T0071993.1 MGP_C57BL6NJ_G0029953.1 mouse_genomes_project 5 44266189 44283880 + MGP_C57BL6NJ_P0071993 C1qtnf7 protein_coding protein_coding MGP_C57BL6NJ_T0101757.1 MGP_C57BL6NJ_G0039803.1 mouse_genomes_project 5 106594904 106595038 + Gm26286 snoRNA snoRNA MGP_C57BL6NJ_T0101730.1 MGP_C57BL6NJ_G0039776.1 mouse_genomes_project 5 54118275 54118387 - Gm23532 snoRNA snoRNA MGP_C57BL6NJ_T0015402.1 MGP_C57BL6NJ_G0013447.1 mouse_genomes_project 5 69398056 69398567 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099124.1 MGP_C57BL6NJ_G0037188.1 mouse_genomes_project 5 140974666 140974789 + Gm27266 rRNA rRNA MGP_C57BL6NJ_T0001618.1 MGP_C57BL6NJ_G0001516.1 mouse_genomes_project 5 27536730 27541082 - TEC TEC MGP_C57BL6NJ_T0015417.1 MGP_C57BL6NJ_G0013462.1 mouse_genomes_project 5 78187385 78188943 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005052.1 MGP_C57BL6NJ_G0004334.1 mouse_genomes_project 5 158652591 158654955 + Gm26597 antisense antisense MGP_C57BL6NJ_T0070992.1 MGP_C57BL6NJ_G0029786.1 mouse_genomes_project 5 24069789 24111536 - MGP_C57BL6NJ_P0070992 Rheb protein_coding protein_coding MGP_C57BL6NJ_T0070993.1 MGP_C57BL6NJ_G0029786.1 mouse_genomes_project 5 24070633 24082053 - Rheb protein_coding retained_intron MGP_C57BL6NJ_T0070994.1 MGP_C57BL6NJ_G0029786.1 mouse_genomes_project 5 24078171 24111340 - Rheb protein_coding retained_intron MGP_C57BL6NJ_T0070995.1 MGP_C57BL6NJ_G0029786.1 mouse_genomes_project 5 24108915 24111521 - Rheb protein_coding retained_intron MGP_C57BL6NJ_T0001764.1 MGP_C57BL6NJ_G0001658.1 mouse_genomes_project 5 67072531 67074253 + TEC TEC MGP_C57BL6NJ_T0015263.1 MGP_C57BL6NJ_G0013308.1 mouse_genomes_project 5 17079071 17079531 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073889.1 MGP_C57BL6NJ_G0030342.1 mouse_genomes_project 5 120187473 120200816 - MGP_C57BL6NJ_P0073889 Crybb2 protein_coding protein_coding MGP_C57BL6NJ_T0073890.1 MGP_C57BL6NJ_G0030342.1 mouse_genomes_project 5 120187480 120199465 - MGP_C57BL6NJ_P0073890 Crybb2 protein_coding protein_coding MGP_C57BL6NJ_T0073891.1 MGP_C57BL6NJ_G0030342.1 mouse_genomes_project 5 120193613 120199156 - Crybb2 protein_coding processed_transcript MGP_C57BL6NJ_T0073892.1 MGP_C57BL6NJ_G0030342.1 mouse_genomes_project 5 120198752 120199470 - Crybb2 protein_coding processed_transcript MGP_C57BL6NJ_T0073893.1 MGP_C57BL6NJ_G0030342.1 mouse_genomes_project 5 120199390 120200193 - Crybb2 protein_coding processed_transcript MGP_C57BL6NJ_T0001676.1 MGP_C57BL6NJ_G0001572.1 mouse_genomes_project 5 45359235 45363018 - TEC TEC MGP_C57BL6NJ_T0071039.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27182950 27236440 - MGP_C57BL6NJ_P0071039 Paxip1 protein_coding protein_coding MGP_C57BL6NJ_T0071040.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27186955 27194042 - Paxip1 protein_coding retained_intron MGP_C57BL6NJ_T0071041.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27203358 27209364 - Paxip1 protein_coding retained_intron MGP_C57BL6NJ_T0071042.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27216105 27236285 - MGP_C57BL6NJ_P0071042 Paxip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071043.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27225075 27236581 - Paxip1 protein_coding processed_transcript MGP_C57BL6NJ_T0071044.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27227205 27236273 - Paxip1 protein_coding retained_intron MGP_C57BL6NJ_T0071045.1 MGP_C57BL6NJ_G0029796.1 mouse_genomes_project 5 27230171 27235263 - Paxip1 protein_coding retained_intron MGP_C57BL6NJ_T0008561.1 MGP_C57BL6NJ_G0006947.1 mouse_genomes_project 5 135686709 135689668 - Gm43754 lincRNA lincRNA MGP_C57BL6NJ_T0076009.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150768816 150784779 + MGP_C57BL6NJ_P0076009 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076011.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150778994 150785284 + MGP_C57BL6NJ_P0076011 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076012.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150779043 150785284 + MGP_C57BL6NJ_P0076012 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076013.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150779088 150785088 + MGP_C57BL6NJ_P0076013 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076014.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150779529 150784955 + MGP_C57BL6NJ_P0076014 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076015.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150779558 150782843 + MGP_C57BL6NJ_P0076015 Nudt1 protein_coding protein_coding MGP_C57BL6NJ_T0076016.1 MGP_C57BL6NJ_G0030727.1 mouse_genomes_project 5 150781719 150782959 + Nudt1 protein_coding processed_transcript MGP_C57BL6NJ_T0015576.1 MGP_C57BL6NJ_G0013621.1 mouse_genomes_project 5 149544236 149548610 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070567.1 MGP_C57BL6NJ_G0029708.1 mouse_genomes_project 5 4137405 4756883 - MGP_C57BL6NJ_P0070567 Zfp804b protein_coding protein_coding MGP_C57BL6NJ_T0070568.1 MGP_C57BL6NJ_G0029708.1 mouse_genomes_project 5 4137425 4256094 - MGP_C57BL6NJ_P0070568 Zfp804b protein_coding protein_coding MGP_C57BL6NJ_T0015498.1 MGP_C57BL6NJ_G0013543.1 mouse_genomes_project 5 113748041 113748786 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074087.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122248775 122267823 + MGP_C57BL6NJ_P0074087 Oasl2 protein_coding protein_coding MGP_C57BL6NJ_T0074088.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122248840 122253901 + MGP_C57BL6NJ_P0074088 Oasl2 protein_coding protein_coding MGP_C57BL6NJ_T0074089.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122248869 122254026 + MGP_C57BL6NJ_P0074089 Oasl2 protein_coding protein_coding MGP_C57BL6NJ_T0074090.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122249371 122250190 + Oasl2 protein_coding retained_intron MGP_C57BL6NJ_T0074091.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122249415 122254338 + Oasl2 protein_coding retained_intron MGP_C57BL6NJ_T0074092.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122249581 122267815 + MGP_C57BL6NJ_P0074092 Oasl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074093.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122255407 122266809 + MGP_C57BL6NJ_P0074093 Oasl2 protein_coding protein_coding MGP_C57BL6NJ_T0074094.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122255888 122258000 + Oasl2 protein_coding retained_intron MGP_C57BL6NJ_T0074095.1 MGP_C57BL6NJ_G0030381.1 mouse_genomes_project 5 122258488 122261178 + Oasl2 protein_coding retained_intron MGP_C57BL6NJ_T0010912.1 MGP_C57BL6NJ_G0008997.1 mouse_genomes_project 5 12337427 12337532 - Gm24054 miRNA miRNA MGP_C57BL6NJ_T0074262.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124722014 124746342 - MGP_C57BL6NJ_P0074262 Suds3 protein_coding protein_coding MGP_C57BL6NJ_T0074263.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124722019 124734742 - Suds3 protein_coding retained_intron MGP_C57BL6NJ_T0074264.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124722771 124746457 - MGP_C57BL6NJ_P0074264 Suds3 protein_coding protein_coding MGP_C57BL6NJ_T0074265.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124725293 124729146 - Suds3 protein_coding retained_intron MGP_C57BL6NJ_T0074266.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124735628 124743895 - Suds3 protein_coding retained_intron MGP_C57BL6NJ_T0074267.1 MGP_C57BL6NJ_G0030413.1 mouse_genomes_project 5 124735634 124740203 - Suds3 protein_coding retained_intron MGP_C57BL6NJ_T0015407.1 MGP_C57BL6NJ_G0013452.1 mouse_genomes_project 5 72678445 72678729 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015273.1 MGP_C57BL6NJ_G0013318.1 mouse_genomes_project 5 20211652 20212004 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001612.1 MGP_C57BL6NJ_G0001511.1 mouse_genomes_project 5 23670615 23672717 - TEC TEC MGP_C57BL6NJ_T0001613.1 MGP_C57BL6NJ_G0001511.1 mouse_genomes_project 5 23672181 23672715 - TEC TEC MGP_C57BL6NJ_T0001818.1 MGP_C57BL6NJ_G0001712.1 mouse_genomes_project 5 75749356 75751463 - TEC TEC MGP_C57BL6NJ_T0076078.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153137226 153202674 - MGP_C57BL6NJ_P0076078 Radil protein_coding protein_coding MGP_C57BL6NJ_T0076079.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153137231 153209797 - Radil protein_coding retained_intron MGP_C57BL6NJ_T0076080.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153137231 153203763 - MGP_C57BL6NJ_P0076080 Radil protein_coding protein_coding MGP_C57BL6NJ_T0076081.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153137268 153209812 - MGP_C57BL6NJ_P0076081 Radil protein_coding protein_coding MGP_C57BL6NJ_T0076082.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153138872 153139959 - Radil protein_coding retained_intron MGP_C57BL6NJ_T0076083.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153161489 153162864 - MGP_C57BL6NJ_P0076083 Radil protein_coding protein_coding MGP_C57BL6NJ_T0076085.1 MGP_C57BL6NJ_G0030743.1 mouse_genomes_project 5 153202352 153209700 - MGP_C57BL6NJ_P0076085 Radil protein_coding protein_coding MGP_C57BL6NJ_T0075238.1 MGP_C57BL6NJ_G0030584.1 mouse_genomes_project 5 143781429 143823832 + MGP_C57BL6NJ_P0075238 Gtf2ird2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075239.1 MGP_C57BL6NJ_G0030584.1 mouse_genomes_project 5 143781613 143817662 + MGP_C57BL6NJ_P0075239 Gtf2ird2 protein_coding protein_coding MGP_C57BL6NJ_T0075240.1 MGP_C57BL6NJ_G0030584.1 mouse_genomes_project 5 143797526 143798154 + Gtf2ird2 protein_coding processed_transcript MGP_C57BL6NJ_T0075241.1 MGP_C57BL6NJ_G0030584.1 mouse_genomes_project 5 143806166 143815724 + Gtf2ird2 protein_coding retained_intron MGP_C57BL6NJ_T0075242.1 MGP_C57BL6NJ_G0030584.1 mouse_genomes_project 5 143813618 143816122 + MGP_C57BL6NJ_P0075242 Gtf2ird2 protein_coding protein_coding MGP_C57BL6NJ_T0074896.1 MGP_C57BL6NJ_G0030521.1 mouse_genomes_project 5 133091654 133103666 + MGP_C57BL6NJ_P0074896 2810006K23Rik protein_coding protein_coding MGP_C57BL6NJ_T0074897.1 MGP_C57BL6NJ_G0030521.1 mouse_genomes_project 5 133091663 133106949 + MGP_C57BL6NJ_P0074897 2810006K23Rik protein_coding protein_coding MGP_C57BL6NJ_T0099110.1 MGP_C57BL6NJ_G0037174.1 mouse_genomes_project 5 21447636 21447749 - n-R5s170 rRNA rRNA MGP_C57BL6NJ_T0074729.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131753109 131763989 - MGP_C57BL6NJ_P0074729 Hpd protein_coding protein_coding MGP_C57BL6NJ_T0074730.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131753174 131754214 - Hpd protein_coding processed_transcript MGP_C57BL6NJ_T0074731.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131753403 131757217 - MGP_C57BL6NJ_P0074731 Hpd protein_coding protein_coding MGP_C57BL6NJ_T0074732.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131758830 131763984 - Hpd protein_coding retained_intron MGP_C57BL6NJ_T0074733.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131758830 131763985 - MGP_C57BL6NJ_P0074733 Hpd protein_coding protein_coding MGP_C57BL6NJ_T0074734.1 MGP_C57BL6NJ_G0030496.1 mouse_genomes_project 5 131761920 131763329 - Hpd protein_coding processed_transcript MGP_C57BL6NJ_T0015585.1 MGP_C57BL6NJ_G0013630.1 mouse_genomes_project 5 153888276 153888658 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071008.1 MGP_C57BL6NJ_G0029789.1 mouse_genomes_project 5 24532000 24536010 + Galnt11 protein_coding processed_transcript MGP_C57BL6NJ_T0071010.1 MGP_C57BL6NJ_G0029789.1 mouse_genomes_project 5 24532978 24575588 + MGP_C57BL6NJ_P0071010 Galnt11 protein_coding protein_coding MGP_C57BL6NJ_T0071011.1 MGP_C57BL6NJ_G0029789.1 mouse_genomes_project 5 24554443 24575587 + MGP_C57BL6NJ_P0071011 Galnt11 protein_coding protein_coding MGP_C57BL6NJ_T0071012.1 MGP_C57BL6NJ_G0029789.1 mouse_genomes_project 5 24554853 24558587 + MGP_C57BL6NJ_P0071012 Galnt11 protein_coding protein_coding MGP_C57BL6NJ_T0071013.1 MGP_C57BL6NJ_G0029789.1 mouse_genomes_project 5 24555433 24575588 + MGP_C57BL6NJ_P0071013 Galnt11 protein_coding protein_coding MGP_C57BL6NJ_T0001770.1 MGP_C57BL6NJ_G0001664.1 mouse_genomes_project 5 67797320 67798873 - TEC TEC MGP_C57BL6NJ_T0015321.1 MGP_C57BL6NJ_G0013366.1 mouse_genomes_project 5 32436113 32436495 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004936.1 MGP_C57BL6NJ_G0004255.1 mouse_genomes_project 5 118359587 118360362 - Gm43118 antisense antisense MGP_C57BL6NJ_T0073453.1 MGP_C57BL6NJ_G0030254.1 mouse_genomes_project 5 111643318 111645962 - protein_coding processed_transcript MGP_C57BL6NJ_T0011873.1 MGP_C57BL6NJ_G0009958.1 mouse_genomes_project 5 125972973 125973263 - Gm24050 misc_RNA misc_RNA MGP_C57BL6NJ_T0075354.1 MGP_C57BL6NJ_G0030598.1 mouse_genomes_project 5 144648247 144652379 - MGP_C57BL6NJ_P0075354 Cldn4 protein_coding protein_coding MGP_C57BL6NJ_T0002020.1 MGP_C57BL6NJ_G0001911.1 mouse_genomes_project 5 145000901 145001705 + TEC TEC MGP_C57BL6NJ_T0074211.1 MGP_C57BL6NJ_G0030405.1 mouse_genomes_project 5 123091839 123107652 + MGP_C57BL6NJ_P0074211 Rab35 protein_coding protein_coding MGP_C57BL6NJ_T0074212.1 MGP_C57BL6NJ_G0030405.1 mouse_genomes_project 5 123092072 123106035 + MGP_C57BL6NJ_P0074212 Rab35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073769.1 MGP_C57BL6NJ_G0030318.1 mouse_genomes_project 5 117464968 117541880 + MGP_C57BL6NJ_P0073769 Galnt9 protein_coding protein_coding MGP_C57BL6NJ_T0073770.1 MGP_C57BL6NJ_G0030318.1 mouse_genomes_project 5 117524029 117541882 + MGP_C57BL6NJ_P0073770 Galnt9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073771.1 MGP_C57BL6NJ_G0030318.1 mouse_genomes_project 5 117524030 117541885 + MGP_C57BL6NJ_P0073771 Galnt9 protein_coding protein_coding MGP_C57BL6NJ_T0008665.1 MGP_C57BL6NJ_G0007023.1 mouse_genomes_project 5 162958351 162964885 + Gm42904 lincRNA lincRNA MGP_C57BL6NJ_T0073418.1 MGP_C57BL6NJ_G0030239.1 mouse_genomes_project 5 110059990 110071871 - MGP_C57BL6NJ_P0073418 Gm17660 protein_coding protein_coding MGP_C57BL6NJ_T0073419.1 MGP_C57BL6NJ_G0030239.1 mouse_genomes_project 5 110060016 110071855 - MGP_C57BL6NJ_P0073419 Gm17660 protein_coding protein_coding MGP_C57BL6NJ_T0073420.1 MGP_C57BL6NJ_G0030239.1 mouse_genomes_project 5 110061175 110071871 - MGP_C57BL6NJ_P0073420 Gm17660 protein_coding protein_coding MGP_C57BL6NJ_T0101725.1 MGP_C57BL6NJ_G0039771.1 mouse_genomes_project 5 20026474 20026593 - Gm22490 snoRNA snoRNA MGP_C57BL6NJ_T0001962.1 MGP_C57BL6NJ_G0001855.1 mouse_genomes_project 5 133211510 133214980 + TEC TEC MGP_C57BL6NJ_T0001963.1 MGP_C57BL6NJ_G0001855.1 mouse_genomes_project 5 133213935 133215109 + TEC TEC MGP_C57BL6NJ_T0001573.1 MGP_C57BL6NJ_G0001472.1 mouse_genomes_project 5 5808119 5810183 - TEC TEC MGP_C57BL6NJ_T0070857.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22892174 22941130 - MGP_C57BL6NJ_P0070857 Pus7 protein_coding protein_coding MGP_C57BL6NJ_T0070858.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22892175 22940972 - MGP_C57BL6NJ_P0070858 Pus7 protein_coding protein_coding MGP_C57BL6NJ_T0070859.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22892182 22937024 - MGP_C57BL6NJ_P0070859 Pus7 protein_coding protein_coding MGP_C57BL6NJ_T0070860.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22893891 22901639 - Pus7 protein_coding processed_transcript MGP_C57BL6NJ_T0070861.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22894948 22920158 - MGP_C57BL6NJ_P0070861 Pus7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070862.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22900904 22920195 - Pus7 protein_coding processed_transcript MGP_C57BL6NJ_T0070863.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22902057 22911339 - Pus7 protein_coding processed_transcript MGP_C57BL6NJ_T0070864.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22917021 22935844 - MGP_C57BL6NJ_P0070864 Pus7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070865.1 MGP_C57BL6NJ_G0029761.1 mouse_genomes_project 5 22930016 22933134 - Pus7 protein_coding retained_intron MGP_C57BL6NJ_T0075992.1 MGP_C57BL6NJ_G0030722.1 mouse_genomes_project 5 150166850 150177564 - MGP_C57BL6NJ_P0075992 Tmem184a protein_coding protein_coding MGP_C57BL6NJ_T0075993.1 MGP_C57BL6NJ_G0030722.1 mouse_genomes_project 5 150169317 150178564 - MGP_C57BL6NJ_P0075993 Tmem184a protein_coding protein_coding MGP_C57BL6NJ_T0075994.1 MGP_C57BL6NJ_G0030722.1 mouse_genomes_project 5 150171632 150172346 - Tmem184a protein_coding retained_intron MGP_C57BL6NJ_T0075996.1 MGP_C57BL6NJ_G0030722.1 mouse_genomes_project 5 150172855 150178323 - MGP_C57BL6NJ_P0075996 Tmem184a protein_coding protein_coding MGP_C57BL6NJ_T0075997.1 MGP_C57BL6NJ_G0030722.1 mouse_genomes_project 5 150177328 150185789 - MGP_C57BL6NJ_P0075997 Tmem184a protein_coding protein_coding MGP_C57BL6NJ_T0071580.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33825696 33872545 - MGP_C57BL6NJ_P0071580 Letm1 protein_coding protein_coding MGP_C57BL6NJ_T0071581.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33828557 33839374 - Letm1 protein_coding retained_intron MGP_C57BL6NJ_T0071582.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33851441 33868372 - MGP_C57BL6NJ_P0071582 Letm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071583.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33859090 33872442 - Letm1 protein_coding processed_transcript MGP_C57BL6NJ_T0071584.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33859289 33860182 - Letm1 protein_coding processed_transcript MGP_C57BL6NJ_T0071585.1 MGP_C57BL6NJ_G0029884.1 mouse_genomes_project 5 33866182 33872465 - MGP_C57BL6NJ_P0071585 Letm1 protein_coding protein_coding MGP_C57BL6NJ_T0008366.1 MGP_C57BL6NJ_G0006817.1 mouse_genomes_project 5 80845810 80849174 + 1700017L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0099467.1 MGP_C57BL6NJ_G0037524.1 mouse_genomes_project 5 45438897 45446798 - Gm3364 sense_intronic sense_intronic MGP_C57BL6NJ_T0015328.1 MGP_C57BL6NJ_G0013373.1 mouse_genomes_project 5 33847157 33847328 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101760.1 MGP_C57BL6NJ_G0039806.1 mouse_genomes_project 5 114468040 114468172 + Gm26387 snoRNA snoRNA MGP_C57BL6NJ_T0001739.1 MGP_C57BL6NJ_G0001634.1 mouse_genomes_project 5 57170171 57175335 - TEC TEC MGP_C57BL6NJ_T0008634.1 MGP_C57BL6NJ_G0007003.1 mouse_genomes_project 5 160440896 160445019 + lincRNA lincRNA MGP_C57BL6NJ_T0100453.1 MGP_C57BL6NJ_G0038499.1 mouse_genomes_project 5 75208264 75208362 - Gm25768 snRNA snRNA MGP_C57BL6NJ_T0072851.1 MGP_C57BL6NJ_G0030100.1 mouse_genomes_project 5 90854964 90919445 - MGP_C57BL6NJ_P0072851 Tmprss11a protein_coding protein_coding MGP_C57BL6NJ_T0072852.1 MGP_C57BL6NJ_G0030100.1 mouse_genomes_project 5 90861873 90864931 - Tmprss11a protein_coding retained_intron MGP_C57BL6NJ_T0071985.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43888222 43948213 + MGP_C57BL6NJ_P0071985 Cpeb2 protein_coding protein_coding MGP_C57BL6NJ_T0071986.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43888515 43948218 + MGP_C57BL6NJ_P0071986 Cpeb2 protein_coding protein_coding MGP_C57BL6NJ_T0071987.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43888979 43892972 + Cpeb2 protein_coding retained_intron MGP_C57BL6NJ_T0071988.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43890090 43939681 + MGP_C57BL6NJ_P0071988 Cpeb2 protein_coding protein_coding MGP_C57BL6NJ_T0071989.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43890102 43890938 + Cpeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0071990.1 MGP_C57BL6NJ_G0029952.1 mouse_genomes_project 5 43892367 43902530 + Cpeb2 protein_coding processed_transcript MGP_C57BL6NJ_T0073145.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97458869 97496246 + MGP_C57BL6NJ_P0073145 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0073146.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97458902 97496146 + MGP_C57BL6NJ_P0073146 Fam47e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073147.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97475277 97496368 + MGP_C57BL6NJ_P0073147 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0073148.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97475336 97496764 + MGP_C57BL6NJ_P0073148 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0073149.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97475337 97496765 + MGP_C57BL6NJ_P0073149 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0073150.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97475343 97490870 + MGP_C57BL6NJ_P0073150 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0073151.1 MGP_C57BL6NJ_G0030183.1 mouse_genomes_project 5 97475356 97496217 + MGP_C57BL6NJ_P0073151 Fam47e protein_coding protein_coding MGP_C57BL6NJ_T0004836.1 MGP_C57BL6NJ_G0004184.1 mouse_genomes_project 5 39125963 39139726 + Clnkos antisense antisense MGP_C57BL6NJ_T0004837.1 MGP_C57BL6NJ_G0004184.1 mouse_genomes_project 5 39125964 39139726 + Clnkos antisense antisense MGP_C57BL6NJ_T0015412.1 MGP_C57BL6NJ_G0013457.1 mouse_genomes_project 5 75492860 75493119 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075342.1 MGP_C57BL6NJ_G0030595.1 mouse_genomes_project 5 144593001 144597413 - MGP_C57BL6NJ_P0075342 Wbscr28 protein_coding protein_coding MGP_C57BL6NJ_T0075343.1 MGP_C57BL6NJ_G0030595.1 mouse_genomes_project 5 144593002 144597413 - MGP_C57BL6NJ_P0075343 Wbscr28 protein_coding protein_coding MGP_C57BL6NJ_T0015478.1 MGP_C57BL6NJ_G0013523.1 mouse_genomes_project 5 107117325 107117617 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008601.1 MGP_C57BL6NJ_G0006974.1 mouse_genomes_project 5 148352916 148356614 - Gm454 lincRNA lincRNA MGP_C57BL6NJ_T0015393.1 MGP_C57BL6NJ_G0013438.1 mouse_genomes_project 5 66409054 66409925 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071455.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32105073 32210166 + Plb1 protein_coding retained_intron MGP_C57BL6NJ_T0071456.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32105075 32107957 + Plb1 protein_coding retained_intron MGP_C57BL6NJ_T0071457.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32105075 32124141 + Plb1 protein_coding processed_transcript MGP_C57BL6NJ_T0071458.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32105079 32246920 + MGP_C57BL6NJ_P0071458 Plb1 protein_coding protein_coding MGP_C57BL6NJ_T0071459.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32105113 32168891 + Plb1 protein_coding retained_intron MGP_C57BL6NJ_T0071460.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32113083 32202116 + MGP_C57BL6NJ_P0071460 Plb1 protein_coding protein_coding MGP_C57BL6NJ_T0071461.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32121350 32246922 + MGP_C57BL6NJ_P0071461 Plb1 protein_coding protein_coding MGP_C57BL6NJ_T0071462.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32234856 32249086 + Plb1 protein_coding processed_transcript MGP_C57BL6NJ_T0071463.1 MGP_C57BL6NJ_G0029864.1 mouse_genomes_project 5 32235981 32246915 + Plb1 protein_coding processed_transcript MGP_C57BL6NJ_T0008513.1 MGP_C57BL6NJ_G0006917.1 mouse_genomes_project 5 126184952 126185485 - Gm28563 lincRNA lincRNA MGP_C57BL6NJ_T0075587.1 MGP_C57BL6NJ_G0030641.1 mouse_genomes_project 5 146947384 146956423 + MGP_C57BL6NJ_P0075587 Cldn15 protein_coding protein_coding MGP_C57BL6NJ_T0075588.1 MGP_C57BL6NJ_G0030641.1 mouse_genomes_project 5 146948449 146956409 + MGP_C57BL6NJ_P0075588 Cldn15 protein_coding protein_coding MGP_C57BL6NJ_T0075589.1 MGP_C57BL6NJ_G0030641.1 mouse_genomes_project 5 146954518 146955578 + Cldn15 protein_coding processed_transcript MGP_C57BL6NJ_T0099273.1 MGP_C57BL6NJ_G0037337.1 mouse_genomes_project 5 144774728 144774857 - Gm25492 scaRNA scaRNA MGP_C57BL6NJ_T0008576.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137681895 137705699 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008577.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137681895 137688180 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008578.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137681917 137705699 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008579.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137681967 137688180 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008580.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137685853 137705705 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008581.1 MGP_C57BL6NJ_G0006958.1 mouse_genomes_project 5 137686964 137705666 - 5930412G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0071968.1 MGP_C57BL6NJ_G0029946.1 mouse_genomes_project 5 39096476 39268255 - MGP_C57BL6NJ_P0071968 Clnk protein_coding protein_coding MGP_C57BL6NJ_T0071969.1 MGP_C57BL6NJ_G0029946.1 mouse_genomes_project 5 39096476 39268255 - MGP_C57BL6NJ_P0071969 Clnk protein_coding protein_coding MGP_C57BL6NJ_T0001975.1 MGP_C57BL6NJ_G0001867.1 mouse_genomes_project 5 137852713 137853383 - TEC TEC MGP_C57BL6NJ_T0073621.1 MGP_C57BL6NJ_G0030287.1 mouse_genomes_project 5 115076006 115106178 + MGP_C57BL6NJ_P0073621 Pcgf3 protein_coding protein_coding MGP_C57BL6NJ_T0073622.1 MGP_C57BL6NJ_G0030287.1 mouse_genomes_project 5 115076006 115125298 + MGP_C57BL6NJ_P0073622 Pcgf3 protein_coding protein_coding MGP_C57BL6NJ_T0073623.1 MGP_C57BL6NJ_G0030287.1 mouse_genomes_project 5 115076087 115103449 + MGP_C57BL6NJ_P0073623 Pcgf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073624.1 MGP_C57BL6NJ_G0030287.1 mouse_genomes_project 5 115090263 115094885 + Pcgf3 protein_coding retained_intron MGP_C57BL6NJ_T0073625.1 MGP_C57BL6NJ_G0030287.1 mouse_genomes_project 5 115103497 115114612 + Pcgf3 protein_coding retained_intron MGP_C57BL6NJ_T0070990.1 MGP_C57BL6NJ_G0029785.1 mouse_genomes_project 5 24014133 24014455 - Crygn protein_coding processed_transcript MGP_C57BL6NJ_T0070991.1 MGP_C57BL6NJ_G0029785.1 mouse_genomes_project 5 24014133 24021134 - MGP_C57BL6NJ_P0070991 Crygn protein_coding protein_coding MGP_C57BL6NJ_T0001834.1 MGP_C57BL6NJ_G0001727.1 mouse_genomes_project 5 77691506 77692836 + TEC TEC MGP_C57BL6NJ_T0075177.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139432845 139482611 + MGP_C57BL6NJ_P0075177 Rabgef1 protein_coding protein_coding MGP_C57BL6NJ_T0075178.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139432871 139478711 + MGP_C57BL6NJ_P0075178 Rabgef1 protein_coding protein_coding MGP_C57BL6NJ_T0075179.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139453988 139477021 + MGP_C57BL6NJ_P0075179 Rabgef1 protein_coding protein_coding MGP_C57BL6NJ_T0075180.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139453988 139482606 + MGP_C57BL6NJ_P0075180 Rabgef1 protein_coding protein_coding MGP_C57BL6NJ_T0075181.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139454035 139475514 + Rabgef1 protein_coding processed_transcript MGP_C57BL6NJ_T0075182.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139454047 139458149 + Rabgef1 protein_coding retained_intron MGP_C57BL6NJ_T0075183.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139475476 139479260 + Rabgef1 protein_coding retained_intron MGP_C57BL6NJ_T0075184.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139479649 139481244 + Rabgef1 protein_coding retained_intron MGP_C57BL6NJ_T0075185.1 MGP_C57BL6NJ_G0030573.1 mouse_genomes_project 5 139481434 139482319 + MGP_C57BL6NJ_P0075185 Rabgef1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071176.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30440162 30532759 + MGP_C57BL6NJ_P0071176 Dpysl5 protein_coding protein_coding MGP_C57BL6NJ_T0071177.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30440492 30532753 + MGP_C57BL6NJ_P0071177 Dpysl5 protein_coding protein_coding MGP_C57BL6NJ_T0071178.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30440499 30479405 + MGP_C57BL6NJ_P0071178 Dpysl5 protein_coding protein_coding MGP_C57BL6NJ_T0071179.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30511500 30520305 + Dpysl5 protein_coding processed_transcript MGP_C57BL6NJ_T0071180.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30521607 30529692 + Dpysl5 protein_coding retained_intron MGP_C57BL6NJ_T0071181.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30525416 30529798 + Dpysl5 protein_coding retained_intron MGP_C57BL6NJ_T0071182.1 MGP_C57BL6NJ_G0029825.1 mouse_genomes_project 5 30527103 30529945 + Dpysl5 protein_coding retained_intron MGP_C57BL6NJ_T0076235.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154992390 155022859 - MGP_C57BL6NJ_P0076235 Tecpr1 protein_coding protein_coding MGP_C57BL6NJ_T0076236.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154993296 155022791 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076237.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154994072 154996141 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076238.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154994077 154996957 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076239.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154996529 154997731 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076240.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 154998432 155001525 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076241.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155005427 155006584 - Tecpr1 protein_coding processed_transcript MGP_C57BL6NJ_T0076242.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155008806 155014931 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076243.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155008822 155022796 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076244.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155011535 155022850 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076245.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155017563 155022802 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0076246.1 MGP_C57BL6NJ_G0030778.1 mouse_genomes_project 5 155019631 155022767 - Tecpr1 protein_coding retained_intron MGP_C57BL6NJ_T0101741.1 MGP_C57BL6NJ_G0039787.1 mouse_genomes_project 5 68154034 68154228 + Gm24346 snoRNA snoRNA MGP_C57BL6NJ_T0073709.1 MGP_C57BL6NJ_G0030308.1 mouse_genomes_project 5 116990682 117011047 + MGP_C57BL6NJ_P0073709 Zfp605 protein_coding protein_coding MGP_C57BL6NJ_T0073710.1 MGP_C57BL6NJ_G0030308.1 mouse_genomes_project 5 116990926 117008713 + Zfp605 protein_coding processed_transcript MGP_C57BL6NJ_T0073711.1 MGP_C57BL6NJ_G0030308.1 mouse_genomes_project 5 116990941 117008671 + MGP_C57BL6NJ_P0073711 Zfp605 protein_coding protein_coding MGP_C57BL6NJ_T0073712.1 MGP_C57BL6NJ_G0030308.1 mouse_genomes_project 5 116992641 117010355 + MGP_C57BL6NJ_P0073712 Zfp605 protein_coding protein_coding MGP_C57BL6NJ_T0076337.1 MGP_C57BL6NJ_G0030796.1 mouse_genomes_project 5 156213456 156219419 + MGP_C57BL6NJ_P0076337 Zscan25 protein_coding protein_coding MGP_C57BL6NJ_T0076338.1 MGP_C57BL6NJ_G0030796.1 mouse_genomes_project 5 156216308 156225679 + MGP_C57BL6NJ_P0076338 Zscan25 protein_coding protein_coding MGP_C57BL6NJ_T0076339.1 MGP_C57BL6NJ_G0030796.1 mouse_genomes_project 5 156216308 156225678 + MGP_C57BL6NJ_P0076339 Zscan25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075213.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140820032 140869193 - MGP_C57BL6NJ_P0075213 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0075214.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140820041 141982929 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075215.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140820513 141982242 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075216.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140821788 141472181 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075217.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140822020 140867349 - MGP_C57BL6NJ_P0075217 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0075218.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140822124 141978482 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075219.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140823037 140846642 - MGP_C57BL6NJ_P0075219 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0075220.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140828132 140838410 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075221.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140858871 140861707 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075222.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140865651 140927245 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075223.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140867066 140923672 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075224.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 140923585 140927280 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075225.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141174554 141981989 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075226.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141447336 141450974 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075227.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141448312 141978643 - Auts2 protein_coding processed_transcript MGP_C57BL6NJ_T0075228.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141453256 141472253 - MGP_C57BL6NJ_P0075228 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0075229.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141453337 141874277 - MGP_C57BL6NJ_P0075229 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0075230.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141471573 141982383 - Auts2 protein_coding retained_intron MGP_C57BL6NJ_T0075231.1 MGP_C57BL6NJ_G0030581.1 mouse_genomes_project 5 141978125 141978434 - MGP_C57BL6NJ_P0075231 Auts2 protein_coding protein_coding MGP_C57BL6NJ_T0005040.1 MGP_C57BL6NJ_G0004327.1 mouse_genomes_project 5 151940726 151948474 - Gm16035 antisense antisense MGP_C57BL6NJ_T0004947.1 MGP_C57BL6NJ_G0004263.1 mouse_genomes_project 5 122334296 122368118 + Hnf1aos1 antisense antisense MGP_C57BL6NJ_T0004949.1 MGP_C57BL6NJ_G0004263.1 mouse_genomes_project 5 122335409 122352804 + Hnf1aos1 antisense antisense MGP_C57BL6NJ_T0004950.1 MGP_C57BL6NJ_G0004263.1 mouse_genomes_project 5 122335432 122368311 + Hnf1aos1 antisense antisense MGP_C57BL6NJ_T0015361.1 MGP_C57BL6NJ_G0013406.1 mouse_genomes_project 5 52084287 52084768 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075200.1 MGP_C57BL6NJ_G0030577.1 mouse_genomes_project 5 139661280 140182235 + MGP_C57BL6NJ_P0075200 Caln1 protein_coding protein_coding MGP_C57BL6NJ_T0075203.1 MGP_C57BL6NJ_G0030577.1 mouse_genomes_project 5 139678335 139825836 + MGP_C57BL6NJ_P0075203 Caln1 protein_coding protein_coding MGP_C57BL6NJ_T0075204.1 MGP_C57BL6NJ_G0030577.1 mouse_genomes_project 5 139751568 139951073 + MGP_C57BL6NJ_P0075204 Caln1 protein_coding protein_coding MGP_C57BL6NJ_T0075205.1 MGP_C57BL6NJ_G0030577.1 mouse_genomes_project 5 139752131 140182697 + MGP_C57BL6NJ_P0075205 Caln1 protein_coding protein_coding MGP_C57BL6NJ_T0075206.1 MGP_C57BL6NJ_G0030577.1 mouse_genomes_project 5 139752920 140189439 + MGP_C57BL6NJ_P0075206 Caln1 protein_coding protein_coding MGP_C57BL6NJ_T0004860.1 MGP_C57BL6NJ_G0004200.1 mouse_genomes_project 5 66130166 66131236 + Gm15819 antisense antisense MGP_C57BL6NJ_T0075344.1 MGP_C57BL6NJ_G0030596.1 mouse_genomes_project 5 144606196 144607474 - MGP_C57BL6NJ_P0075344 Cldn13 protein_coding protein_coding MGP_C57BL6NJ_T0001572.1 MGP_C57BL6NJ_G0001471.1 mouse_genomes_project 5 4663286 4664830 - TEC TEC MGP_C57BL6NJ_T0015255.1 MGP_C57BL6NJ_G0013300.1 mouse_genomes_project 5 12309045 12309556 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072626.1 MGP_C57BL6NJ_G0030062.1 mouse_genomes_project 5 77299645 77303819 + MGP_C57BL6NJ_P0072626 Rasl11b protein_coding protein_coding MGP_C57BL6NJ_T0072627.1 MGP_C57BL6NJ_G0030062.1 mouse_genomes_project 5 77299804 77300650 + Rasl11b protein_coding retained_intron MGP_C57BL6NJ_T0072628.1 MGP_C57BL6NJ_G0030062.1 mouse_genomes_project 5 77302228 77303810 + Rasl11b protein_coding retained_intron MGP_C57BL6NJ_T0076071.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111007 153113618 + MGP_C57BL6NJ_P0076071 Ap5z1 protein_coding protein_coding MGP_C57BL6NJ_T0076072.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111062 153121990 + Ap5z1 protein_coding processed_transcript MGP_C57BL6NJ_T0076073.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111107 153117962 + MGP_C57BL6NJ_P0076073 Ap5z1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076074.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111117 153128480 + MGP_C57BL6NJ_P0076074 Ap5z1 protein_coding protein_coding MGP_C57BL6NJ_T0076075.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111124 153127572 + Ap5z1 protein_coding retained_intron MGP_C57BL6NJ_T0076076.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153111137 153127824 + MGP_C57BL6NJ_P0076076 Ap5z1 protein_coding protein_coding MGP_C57BL6NJ_T0076077.1 MGP_C57BL6NJ_G0030742.1 mouse_genomes_project 5 153123868 153125523 + Ap5z1 protein_coding retained_intron MGP_C57BL6NJ_T0074300.1 MGP_C57BL6NJ_G0030419.1 mouse_genomes_project 5 125086206 125246637 + Ksr2 protein_coding retained_intron MGP_C57BL6NJ_T0074301.1 MGP_C57BL6NJ_G0030419.1 mouse_genomes_project 5 125086206 125475981 + MGP_C57BL6NJ_P0074301 Ksr2 protein_coding protein_coding MGP_C57BL6NJ_T0074302.1 MGP_C57BL6NJ_G0030419.1 mouse_genomes_project 5 125087035 125466541 + MGP_C57BL6NJ_P0074302 Ksr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102501.1 MGP_C57BL6NJ_G0040369.1 mouse_genomes_project 5 75498259 75502253 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0072474.1 MGP_C57BL6NJ_G0030031.1 mouse_genomes_project 5 70612853 70751449 + MGP_C57BL6NJ_P0072474 Grxcr1 protein_coding protein_coding MGP_C57BL6NJ_T0074164.1 MGP_C57BL6NJ_G0030397.1 mouse_genomes_project 5 122756202 122758547 + MGP_C57BL6NJ_P0074164 Triap1 protein_coding protein_coding MGP_C57BL6NJ_T0101743.1 MGP_C57BL6NJ_G0039789.1 mouse_genomes_project 5 77187326 77187447 + Snora26 snoRNA snoRNA MGP_C57BL6NJ_T0074159.1 MGP_C57BL6NJ_G0030395.1 mouse_genomes_project 5 122741739 122747919 + MGP_C57BL6NJ_P0074159 Srsf9 protein_coding protein_coding MGP_C57BL6NJ_T0074160.1 MGP_C57BL6NJ_G0030395.1 mouse_genomes_project 5 122742494 122747848 + Srsf9 protein_coding processed_transcript MGP_C57BL6NJ_T0074161.1 MGP_C57BL6NJ_G0030395.1 mouse_genomes_project 5 122743478 122747489 + Srsf9 protein_coding processed_transcript MGP_C57BL6NJ_T0074162.1 MGP_C57BL6NJ_G0030395.1 mouse_genomes_project 5 122745416 122747848 + MGP_C57BL6NJ_P0074162 Srsf9 protein_coding protein_coding MGP_C57BL6NJ_T0075316.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144246413 144272282 - MGP_C57BL6NJ_P0075316 Lat2 protein_coding protein_coding MGP_C57BL6NJ_T0075317.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144246494 144272247 - MGP_C57BL6NJ_P0075317 Lat2 protein_coding protein_coding MGP_C57BL6NJ_T0075318.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144246629 144259080 - MGP_C57BL6NJ_P0075318 Lat2 protein_coding protein_coding MGP_C57BL6NJ_T0075319.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144246822 144256432 - MGP_C57BL6NJ_P0075319 Lat2 protein_coding protein_coding MGP_C57BL6NJ_T0075320.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144246960 144255877 - Lat2 protein_coding processed_transcript MGP_C57BL6NJ_T0075321.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144247189 144272263 - MGP_C57BL6NJ_P0075321 Lat2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075322.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144247202 144253989 - Lat2 protein_coding retained_intron MGP_C57BL6NJ_T0075323.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144254837 144272242 - Lat2 protein_coding processed_transcript MGP_C57BL6NJ_T0075324.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144256006 144272223 - MGP_C57BL6NJ_P0075324 Lat2 protein_coding protein_coding MGP_C57BL6NJ_T0075325.1 MGP_C57BL6NJ_G0030591.1 mouse_genomes_project 5 144256111 144258235 - Lat2 protein_coding retained_intron MGP_C57BL6NJ_T0015586.1 MGP_C57BL6NJ_G0013631.1 mouse_genomes_project 5 154226760 154227298 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100418.1 MGP_C57BL6NJ_G0038464.1 mouse_genomes_project 5 3337464 3337626 - Gm23838 snRNA snRNA MGP_C57BL6NJ_T0075038.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136609165 136633204 - MGP_C57BL6NJ_P0075038 Slc15a4 protein_coding protein_coding MGP_C57BL6NJ_T0075039.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136609168 136633014 - MGP_C57BL6NJ_P0075039 Slc15a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075040.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136609168 136633206 - MGP_C57BL6NJ_P0075040 Slc15a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075041.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136610157 136618182 - MGP_C57BL6NJ_P0075041 Slc15a4 protein_coding protein_coding MGP_C57BL6NJ_T0075042.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136615431 136648445 - MGP_C57BL6NJ_P0075042 Slc15a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075043.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136617282 136618109 - Slc15a4 protein_coding processed_transcript MGP_C57BL6NJ_T0075044.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136617282 136618109 - Slc15a4 protein_coding processed_transcript MGP_C57BL6NJ_T0075045.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136617308 136625138 - MGP_C57BL6NJ_P0075045 Slc15a4 protein_coding protein_coding MGP_C57BL6NJ_T0075046.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136618107 136632671 - Slc15a4 protein_coding processed_transcript MGP_C57BL6NJ_T0075047.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136624579 136648462 - MGP_C57BL6NJ_P0075047 Slc15a4 protein_coding protein_coding MGP_C57BL6NJ_T0075048.1 MGP_C57BL6NJ_G0030546.1 mouse_genomes_project 5 136630232 136633169 - Slc15a4 protein_coding retained_intron MGP_C57BL6NJ_T0001823.1 MGP_C57BL6NJ_G0001716.1 mouse_genomes_project 5 76278196 76279074 + TEC TEC MGP_C57BL6NJ_T0075493.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831849 145875191 + MGP_C57BL6NJ_P0075493 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075494.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831860 145875183 + MGP_C57BL6NJ_P0075494 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075495.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831893 145875190 + MGP_C57BL6NJ_P0075495 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075496.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831896 145851774 + MGP_C57BL6NJ_P0075496 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075497.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831907 145875185 + MGP_C57BL6NJ_P0075497 Dtx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075498.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831926 145875183 + MGP_C57BL6NJ_P0075498 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075499.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145831931 145849690 + MGP_C57BL6NJ_P0075499 Dtx2 protein_coding protein_coding MGP_C57BL6NJ_T0075500.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145834683 145835984 + Dtx2 protein_coding processed_transcript MGP_C57BL6NJ_T0075501.1 MGP_C57BL6NJ_G0030627.1 mouse_genomes_project 5 145859135 145875183 + Dtx2 protein_coding retained_intron MGP_C57BL6NJ_T0008281.1 MGP_C57BL6NJ_G0006749.1 mouse_genomes_project 5 38133381 38134154 + Gm43763 lincRNA lincRNA MGP_C57BL6NJ_T0072698.1 MGP_C57BL6NJ_G0030074.1 mouse_genomes_project 5 79546190 79565816 - MGP_C57BL6NJ_P0072698 Pdcl2 protein_coding protein_coding MGP_C57BL6NJ_T0072699.1 MGP_C57BL6NJ_G0030074.1 mouse_genomes_project 5 79546202 79565839 - MGP_C57BL6NJ_P0072699 Pdcl2 protein_coding protein_coding MGP_C57BL6NJ_T0001672.1 MGP_C57BL6NJ_G0001568.1 mouse_genomes_project 5 45218803 45222088 - TEC TEC MGP_C57BL6NJ_T0001758.1 MGP_C57BL6NJ_G0001653.1 mouse_genomes_project 5 64709039 64710083 - TEC TEC MGP_C57BL6NJ_T0074971.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133493218 133619165 + MGP_C57BL6NJ_P0074971 Dnah10 protein_coding protein_coding MGP_C57BL6NJ_T0074972.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133493218 133619170 + MGP_C57BL6NJ_P0074972 Dnah10 protein_coding protein_coding MGP_C57BL6NJ_T0074973.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133566531 133568716 + Dnah10 protein_coding processed_transcript MGP_C57BL6NJ_T0074974.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133573094 133577768 + Dnah10 protein_coding processed_transcript MGP_C57BL6NJ_T0074975.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133582890 133586109 + Dnah10 protein_coding retained_intron MGP_C57BL6NJ_T0074976.1 MGP_C57BL6NJ_G0030533.1 mouse_genomes_project 5 133586760 133618987 + Dnah10 protein_coding retained_intron MGP_C57BL6NJ_T0001753.1 MGP_C57BL6NJ_G0001648.1 mouse_genomes_project 5 59681067 59682809 + TEC TEC MGP_C57BL6NJ_T0001591.1 MGP_C57BL6NJ_G0001490.1 mouse_genomes_project 5 12704745 12707623 + TEC TEC MGP_C57BL6NJ_T0001896.1 MGP_C57BL6NJ_G0001789.1 mouse_genomes_project 5 118161302 118161842 + TEC TEC MGP_C57BL6NJ_T0076255.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155631770 155632709 + Trrap protein_coding processed_transcript MGP_C57BL6NJ_T0076256.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155632109 155651658 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076257.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155632249 155727690 + MGP_C57BL6NJ_P0076257 Trrap protein_coding unknown_likely_coding MGP_C57BL6NJ_T0076258.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155632561 155641043 + MGP_C57BL6NJ_P0076258 Trrap protein_coding protein_coding MGP_C57BL6NJ_T0076259.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155632811 155727683 + MGP_C57BL6NJ_P0076259 Trrap protein_coding protein_coding MGP_C57BL6NJ_T0076260.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155635106 155727656 + MGP_C57BL6NJ_P0076260 Trrap protein_coding protein_coding MGP_C57BL6NJ_T0076261.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155635106 155727681 + MGP_C57BL6NJ_P0076261 Trrap protein_coding protein_coding MGP_C57BL6NJ_T0076262.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155649271 155727681 + MGP_C57BL6NJ_P0076262 Trrap protein_coding protein_coding MGP_C57BL6NJ_T0076263.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155655209 155657402 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076264.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155669683 155702469 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076265.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155676985 155678737 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076266.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155684752 155691068 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076267.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155706942 155708402 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076268.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155723539 155727682 + Trrap protein_coding retained_intron MGP_C57BL6NJ_T0076269.1 MGP_C57BL6NJ_G0030783.1 mouse_genomes_project 5 155725180 155727248 + Trrap protein_coding processed_transcript MGP_C57BL6NJ_T0008631.1 MGP_C57BL6NJ_G0007001.1 mouse_genomes_project 5 160428499 160484433 - Gm15406 lincRNA lincRNA MGP_C57BL6NJ_T0008633.1 MGP_C57BL6NJ_G0007001.1 mouse_genomes_project 5 160434229 160484376 - Gm15406 lincRNA lincRNA MGP_C57BL6NJ_T0071165.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365515 30375093 + MGP_C57BL6NJ_P0071165 Cenpa protein_coding protein_coding MGP_C57BL6NJ_T0071166.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365635 30373032 + MGP_C57BL6NJ_P0071166 Cenpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071167.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365650 30372969 + MGP_C57BL6NJ_P0071167 Cenpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071168.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365673 30373063 + Cenpa protein_coding retained_intron MGP_C57BL6NJ_T0071169.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365681 30368498 + MGP_C57BL6NJ_P0071169 Cenpa protein_coding protein_coding MGP_C57BL6NJ_T0071170.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365695 30372718 + MGP_C57BL6NJ_P0071170 Cenpa protein_coding protein_coding MGP_C57BL6NJ_T0071171.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365698 30369419 + Cenpa protein_coding retained_intron MGP_C57BL6NJ_T0071172.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365712 30373063 + MGP_C57BL6NJ_P0071172 Cenpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071173.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30365736 30373040 + MGP_C57BL6NJ_P0071173 Cenpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071174.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30368560 30373062 + MGP_C57BL6NJ_P0071174 Cenpa protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071175.1 MGP_C57BL6NJ_G0029824.1 mouse_genomes_project 5 30370608 30372856 + Cenpa protein_coding retained_intron MGP_C57BL6NJ_T0002009.1 MGP_C57BL6NJ_G0001901.1 mouse_genomes_project 5 141971048 141971872 - TEC TEC MGP_C57BL6NJ_T0071014.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24581466 24765062 - MGP_C57BL6NJ_P0071014 Kmt2c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071015.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24581475 24609651 - MGP_C57BL6NJ_P0071015 Kmt2c protein_coding protein_coding MGP_C57BL6NJ_T0071016.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24582103 24618126 - MGP_C57BL6NJ_P0071016 Kmt2c protein_coding protein_coding MGP_C57BL6NJ_T0071017.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24583286 24824866 - MGP_C57BL6NJ_P0071017 Kmt2c protein_coding protein_coding MGP_C57BL6NJ_T0071018.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24585328 24590969 - Kmt2c protein_coding retained_intron MGP_C57BL6NJ_T0071019.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24598688 24602955 - Kmt2c protein_coding retained_intron MGP_C57BL6NJ_T0071020.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24625326 24824823 - MGP_C57BL6NJ_P0071020 Kmt2c protein_coding protein_coding MGP_C57BL6NJ_T0071021.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24684846 24824876 - MGP_C57BL6NJ_P0071021 Kmt2c protein_coding protein_coding MGP_C57BL6NJ_T0071022.1 MGP_C57BL6NJ_G0029791.1 mouse_genomes_project 5 24694303 24824904 - Kmt2c protein_coding retained_intron MGP_C57BL6NJ_T0001788.1 MGP_C57BL6NJ_G0001682.1 mouse_genomes_project 5 68791886 68793899 - TEC TEC MGP_C57BL6NJ_T0103213.1 MGP_C57BL6NJ_G0041007.1 mouse_genomes_project 5 116316637 116318950 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001914.1 MGP_C57BL6NJ_G0001807.1 mouse_genomes_project 5 122860323 122864398 - TEC TEC MGP_C57BL6NJ_T0008267.1 MGP_C57BL6NJ_G0006741.1 mouse_genomes_project 5 33494124 33494964 - Gm43851 lincRNA lincRNA MGP_C57BL6NJ_T0015379.1 MGP_C57BL6NJ_G0013424.1 mouse_genomes_project 5 61315254 61315633 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018637.1 MGP_C57BL6NJ_G0016001.1 mouse_genomes_project 5 114262904 114264842 + A430072P03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018638.1 MGP_C57BL6NJ_G0016001.1 mouse_genomes_project 5 114264135 114266539 + A430072P03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002045.1 MGP_C57BL6NJ_G0001936.1 mouse_genomes_project 5 160912234 160913872 + TEC TEC MGP_C57BL6NJ_T0001635.1 MGP_C57BL6NJ_G0001531.1 mouse_genomes_project 5 32345174 32347640 + TEC TEC MGP_C57BL6NJ_T0076170.1 MGP_C57BL6NJ_G0030762.1 mouse_genomes_project 5 154168392 154186999 + MGP_C57BL6NJ_P0076170 Kdelr2 protein_coding protein_coding MGP_C57BL6NJ_T0015329.1 MGP_C57BL6NJ_G0013374.1 mouse_genomes_project 5 33864639 33864951 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001894.1 MGP_C57BL6NJ_G0001787.1 mouse_genomes_project 5 117972905 117973639 + TEC TEC MGP_C57BL6NJ_T0072064.1 MGP_C57BL6NJ_G0029965.1 mouse_genomes_project 5 46316118 46323145 + MGP_C57BL6NJ_P0072064 Med28 protein_coding protein_coding MGP_C57BL6NJ_T0072065.1 MGP_C57BL6NJ_G0029965.1 mouse_genomes_project 5 46316211 46323393 + MGP_C57BL6NJ_P0072065 Med28 protein_coding protein_coding MGP_C57BL6NJ_T0072066.1 MGP_C57BL6NJ_G0029965.1 mouse_genomes_project 5 46316923 46323400 + Med28 protein_coding processed_transcript MGP_C57BL6NJ_T0072067.1 MGP_C57BL6NJ_G0029965.1 mouse_genomes_project 5 46318082 46322973 + Med28 protein_coding retained_intron MGP_C57BL6NJ_T0072713.1 MGP_C57BL6NJ_G0030077.1 mouse_genomes_project 5 79846383 79909027 + Cep135 protein_coding retained_intron MGP_C57BL6NJ_T0072714.1 MGP_C57BL6NJ_G0030077.1 mouse_genomes_project 5 79846386 79910585 + MGP_C57BL6NJ_P0072714 Cep135 protein_coding protein_coding MGP_C57BL6NJ_T0072715.1 MGP_C57BL6NJ_G0030077.1 mouse_genomes_project 5 79849399 79910584 + MGP_C57BL6NJ_P0072715 Cep135 protein_coding protein_coding MGP_C57BL6NJ_T0075616.1 MGP_C57BL6NJ_G0030648.1 mouse_genomes_project 5 147128117 147142510 - MGP_C57BL6NJ_P0075616 Muc3 protein_coding protein_coding MGP_C57BL6NJ_T0075617.1 MGP_C57BL6NJ_G0030648.1 mouse_genomes_project 5 147128156 147132315 - Muc3 protein_coding processed_transcript MGP_C57BL6NJ_T0002012.1 MGP_C57BL6NJ_G0001904.1 mouse_genomes_project 5 143672934 143673900 - TEC TEC MGP_C57BL6NJ_T0076281.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 155995184 156027306 + MGP_C57BL6NJ_P0076281 Arpc1a protein_coding protein_coding MGP_C57BL6NJ_T0076282.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 155995238 156010935 + Arpc1a protein_coding processed_transcript MGP_C57BL6NJ_T0076283.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 155995260 156027301 + MGP_C57BL6NJ_P0076283 Arpc1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076284.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 155995454 156011980 + MGP_C57BL6NJ_P0076284 Arpc1a protein_coding protein_coding MGP_C57BL6NJ_T0076285.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 156011008 156013680 + Arpc1a protein_coding retained_intron MGP_C57BL6NJ_T0076286.1 MGP_C57BL6NJ_G0030786.1 mouse_genomes_project 5 156022815 156027137 + Arpc1a protein_coding retained_intron MGP_C57BL6NJ_T0015512.1 MGP_C57BL6NJ_G0013557.1 mouse_genomes_project 5 116021183 116021423 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100489.1 MGP_C57BL6NJ_G0038535.1 mouse_genomes_project 5 132309462 132309609 + Gm24840 snRNA snRNA MGP_C57BL6NJ_T0072932.1 MGP_C57BL6NJ_G0030125.1 mouse_genomes_project 5 92504309 92516692 + MGP_C57BL6NJ_P0072932 Odam protein_coding protein_coding MGP_C57BL6NJ_T0072933.1 MGP_C57BL6NJ_G0030125.1 mouse_genomes_project 5 92504975 92515263 + MGP_C57BL6NJ_P0072933 Odam protein_coding protein_coding MGP_C57BL6NJ_T0001762.1 MGP_C57BL6NJ_G0001656.1 mouse_genomes_project 5 66460961 66463274 + TEC TEC MGP_C57BL6NJ_T0071811.1 MGP_C57BL6NJ_G0029920.1 mouse_genomes_project 5 36716787 36727302 - MGP_C57BL6NJ_P0071811 Tada2b protein_coding protein_coding MGP_C57BL6NJ_T0071812.1 MGP_C57BL6NJ_G0029920.1 mouse_genomes_project 5 36718909 36727280 - MGP_C57BL6NJ_P0071812 Tada2b protein_coding protein_coding MGP_C57BL6NJ_T0001803.1 MGP_C57BL6NJ_G0001697.1 mouse_genomes_project 5 70329432 70331187 - TEC TEC MGP_C57BL6NJ_T0071437.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545508 31581676 + MGP_C57BL6NJ_P0071437 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071438.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545728 31582096 + Bre protein_coding retained_intron MGP_C57BL6NJ_T0071439.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545754 31557829 + Bre protein_coding processed_transcript MGP_C57BL6NJ_T0071440.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545764 31869133 + Bre protein_coding retained_intron MGP_C57BL6NJ_T0071441.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545768 31952043 + MGP_C57BL6NJ_P0071441 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071442.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545772 31692002 + Bre protein_coding retained_intron MGP_C57BL6NJ_T0071443.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545788 31951936 + MGP_C57BL6NJ_P0071443 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071444.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545808 31951828 + MGP_C57BL6NJ_P0071444 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071445.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545808 31951828 + MGP_C57BL6NJ_P0071445 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071446.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545808 31951828 + MGP_C57BL6NJ_P0071446 Bre protein_coding protein_coding MGP_C57BL6NJ_T0071447.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31545809 31681236 + MGP_C57BL6NJ_P0071447 Bre protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071448.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31549594 31923376 + MGP_C57BL6NJ_P0071448 Bre protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071449.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31642730 31681317 + Bre protein_coding processed_transcript MGP_C57BL6NJ_T0071450.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31910249 31951842 + Bre protein_coding processed_transcript MGP_C57BL6NJ_T0071451.1 MGP_C57BL6NJ_G0029862.1 mouse_genomes_project 5 31946785 31951835 + Bre protein_coding processed_transcript MGP_C57BL6NJ_T0001744.1 MGP_C57BL6NJ_G0001639.1 mouse_genomes_project 5 59381530 59384124 + TEC TEC MGP_C57BL6NJ_T0015441.1 MGP_C57BL6NJ_G0013486.1 mouse_genomes_project 5 91699865 91701417 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004859.1 MGP_C57BL6NJ_G0004199.1 mouse_genomes_project 5 54771449 54772411 - Gm42747 antisense antisense MGP_C57BL6NJ_T0074718.1 MGP_C57BL6NJ_G0030493.1 mouse_genomes_project 5 131678572 131712505 - MGP_C57BL6NJ_P0074718 Rhof protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074719.1 MGP_C57BL6NJ_G0030493.1 mouse_genomes_project 5 131678572 131712440 - MGP_C57BL6NJ_P0074719 Rhof protein_coding protein_coding MGP_C57BL6NJ_T0074720.1 MGP_C57BL6NJ_G0030493.1 mouse_genomes_project 5 131687940 131712473 - Rhof protein_coding processed_transcript MGP_C57BL6NJ_T0074721.1 MGP_C57BL6NJ_G0030493.1 mouse_genomes_project 5 131696247 131712736 - MGP_C57BL6NJ_P0074721 Rhof protein_coding protein_coding MGP_C57BL6NJ_T0004812.1 MGP_C57BL6NJ_G0004163.1 mouse_genomes_project 5 27993943 28477912 + antisense antisense MGP_C57BL6NJ_T0004813.1 MGP_C57BL6NJ_G0004163.1 mouse_genomes_project 5 28007666 28248851 + antisense antisense MGP_C57BL6NJ_T0100427.1 MGP_C57BL6NJ_G0038473.1 mouse_genomes_project 5 21677393 21677458 - Gm24512 snRNA snRNA MGP_C57BL6NJ_T0070749.1 MGP_C57BL6NJ_G0029741.1 mouse_genomes_project 5 19771044 19775724 + MGP_C57BL6NJ_P0070749 Tmem60 protein_coding protein_coding MGP_C57BL6NJ_T0070750.1 MGP_C57BL6NJ_G0029741.1 mouse_genomes_project 5 19771360 19773538 + Tmem60 protein_coding processed_transcript MGP_C57BL6NJ_T0076406.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158291904 158293941 + MGP_C57BL6NJ_P0076406 Polr1d protein_coding protein_coding MGP_C57BL6NJ_T0076407.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158292200 158327540 + MGP_C57BL6NJ_P0076407 Polr1d protein_coding protein_coding MGP_C57BL6NJ_T0076408.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158292402 158327776 + MGP_C57BL6NJ_P0076408 Polr1d protein_coding protein_coding MGP_C57BL6NJ_T0076409.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158292418 158327753 + MGP_C57BL6NJ_P0076409 Polr1d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076410.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158317342 158327049 + Polr1d protein_coding retained_intron MGP_C57BL6NJ_T0076411.1 MGP_C57BL6NJ_G0030821.1 mouse_genomes_project 5 158321544 158327165 + Polr1d protein_coding processed_transcript MGP_C57BL6NJ_T0008349.1 MGP_C57BL6NJ_G0006802.1 mouse_genomes_project 5 77861337 77864273 - Gm15985 lincRNA lincRNA MGP_C57BL6NJ_T0102265.1 MGP_C57BL6NJ_G0040252.1 mouse_genomes_project 5 57851362 57935725 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0001779.1 MGP_C57BL6NJ_G0001673.1 mouse_genomes_project 5 68234028 68236413 + TEC TEC MGP_C57BL6NJ_T0008236.1 MGP_C57BL6NJ_G0006722.1 mouse_genomes_project 5 22529191 22562749 - lincRNA lincRNA MGP_C57BL6NJ_T0008237.1 MGP_C57BL6NJ_G0006722.1 mouse_genomes_project 5 22551799 22562722 - lincRNA lincRNA MGP_C57BL6NJ_T0008238.1 MGP_C57BL6NJ_G0006722.1 mouse_genomes_project 5 22561177 22563332 - lincRNA lincRNA MGP_C57BL6NJ_T0008239.1 MGP_C57BL6NJ_G0006722.1 mouse_genomes_project 5 22561654 22563682 - lincRNA lincRNA MGP_C57BL6NJ_T0074081.1 MGP_C57BL6NJ_G0030378.1 mouse_genomes_project 5 122143001 122144472 - MGP_C57BL6NJ_P0074081 2610524H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0072879.1 MGP_C57BL6NJ_G0030111.1 mouse_genomes_project 5 91625950 91647602 - MGP_C57BL6NJ_P0072879 Ugt2b37 protein_coding protein_coding MGP_C57BL6NJ_T0010948.1 MGP_C57BL6NJ_G0009033.1 mouse_genomes_project 5 104043498 104043607 - Mir703 miRNA miRNA MGP_C57BL6NJ_T0015487.1 MGP_C57BL6NJ_G0013532.1 mouse_genomes_project 5 109963236 109963458 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076392.1 MGP_C57BL6NJ_G0030817.1 mouse_genomes_project 5 158026541 158029197 + MGP_C57BL6NJ_P0076392 Rasl11a protein_coding protein_coding MGP_C57BL6NJ_T0076393.1 MGP_C57BL6NJ_G0030817.1 mouse_genomes_project 5 158027235 158028853 + Rasl11a protein_coding retained_intron MGP_C57BL6NJ_T0072940.1 MGP_C57BL6NJ_G0030127.1 mouse_genomes_project 5 92593710 92597122 + MGP_C57BL6NJ_P0072940 2310003L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0071081.1 MGP_C57BL6NJ_G0029805.1 mouse_genomes_project 5 29020349 29048685 + MGP_C57BL6NJ_P0071081 Nom1 protein_coding protein_coding MGP_C57BL6NJ_T0071082.1 MGP_C57BL6NJ_G0029805.1 mouse_genomes_project 5 29028955 29033984 + Nom1 protein_coding retained_intron MGP_C57BL6NJ_T0010931.1 MGP_C57BL6NJ_G0009016.1 mouse_genomes_project 5 66321554 66321650 - Gm22395 miRNA miRNA MGP_C57BL6NJ_T0001755.1 MGP_C57BL6NJ_G0001650.1 mouse_genomes_project 5 59811797 59814436 - TEC TEC MGP_C57BL6NJ_T0015391.1 MGP_C57BL6NJ_G0013436.1 mouse_genomes_project 5 65885757 65886217 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100439.1 MGP_C57BL6NJ_G0038485.1 mouse_genomes_project 5 39087184 39087291 - Gm22779 snRNA snRNA MGP_C57BL6NJ_T0005056.1 MGP_C57BL6NJ_G0004338.1 mouse_genomes_project 5 160940074 160943352 - Gm43150 antisense antisense MGP_C57BL6NJ_T0074333.1 MGP_C57BL6NJ_G0030426.1 mouse_genomes_project 5 126007310 126029231 + MGP_C57BL6NJ_P0074333 2410131K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0001855.1 MGP_C57BL6NJ_G0001748.1 mouse_genomes_project 5 98145472 98147375 - TEC TEC MGP_C57BL6NJ_T0075596.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146967599 146977229 + MGP_C57BL6NJ_P0075596 Plod3 protein_coding protein_coding MGP_C57BL6NJ_T0075597.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146967958 146972669 + Plod3 protein_coding retained_intron MGP_C57BL6NJ_T0075598.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146968056 146973286 + Plod3 protein_coding retained_intron MGP_C57BL6NJ_T0075599.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146970886 146974760 + Plod3 protein_coding retained_intron MGP_C57BL6NJ_T0075600.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146971082 146972669 + Plod3 protein_coding retained_intron MGP_C57BL6NJ_T0075601.1 MGP_C57BL6NJ_G0030643.1 mouse_genomes_project 5 146972204 146975758 + MGP_C57BL6NJ_P0075601 Plod3 protein_coding protein_coding MGP_C57BL6NJ_T0004858.1 MGP_C57BL6NJ_G0004198.1 mouse_genomes_project 5 54742581 54746045 - Gm10441 antisense antisense MGP_C57BL6NJ_T0001637.1 MGP_C57BL6NJ_G0001533.1 mouse_genomes_project 5 32507527 32514516 - TEC TEC MGP_C57BL6NJ_T0008605.1 MGP_C57BL6NJ_G0006978.1 mouse_genomes_project 5 151030195 151031102 - Gm42808 lincRNA lincRNA MGP_C57BL6NJ_T0073015.1 MGP_C57BL6NJ_G0030150.1 mouse_genomes_project 5 95103585 95104869 + MGP_C57BL6NJ_P0073015 Gm9958 protein_coding protein_coding MGP_C57BL6NJ_T0015436.1 MGP_C57BL6NJ_G0013481.1 mouse_genomes_project 5 90416917 90417128 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072571.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 75987512 76148419 - MGP_C57BL6NJ_P0072571 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072573.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76009308 76060709 - MGP_C57BL6NJ_P0072573 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072574.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76010518 76061111 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072575.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76030793 76078951 - MGP_C57BL6NJ_P0072575 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072576.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76036848 76039841 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072577.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76036951 76073820 - Fryl protein_coding processed_transcript MGP_C57BL6NJ_T0072578.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76043293 76044224 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072579.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76053891 76054769 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072580.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76054959 76060833 - MGP_C57BL6NJ_P0072580 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072581.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76062505 76065620 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072582.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76089489 76090483 - MGP_C57BL6NJ_P0072582 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072583.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76091617 76167121 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072584.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76101982 76113413 - MGP_C57BL6NJ_P0072584 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072585.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76111848 76115823 - MGP_C57BL6NJ_P0072585 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072586.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76112780 76260407 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0072587.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76144323 76190733 - MGP_C57BL6NJ_P0072587 Fryl protein_coding protein_coding MGP_C57BL6NJ_T0072588.1 MGP_C57BL6NJ_G0030053.1 mouse_genomes_project 5 76192815 76260571 - Fryl protein_coding retained_intron MGP_C57BL6NJ_T0015334.1 MGP_C57BL6NJ_G0013379.1 mouse_genomes_project 5 35750653 35755021 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076123.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153704835 153835585 - MGP_C57BL6NJ_P0076123 Rnf216 protein_coding protein_coding MGP_C57BL6NJ_T0076124.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153705762 153835571 - MGP_C57BL6NJ_P0076124 Rnf216 protein_coding protein_coding MGP_C57BL6NJ_T0076125.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153706559 153818061 - MGP_C57BL6NJ_P0076125 Rnf216 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076126.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153706591 153818061 - MGP_C57BL6NJ_P0076126 Rnf216 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076127.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153730646 153732048 - Rnf216 protein_coding retained_intron MGP_C57BL6NJ_T0076128.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153785947 153835571 - Rnf216 protein_coding retained_intron MGP_C57BL6NJ_T0076129.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153800586 153807395 - Rnf216 protein_coding retained_intron MGP_C57BL6NJ_T0076130.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153809840 153835571 - Rnf216 protein_coding processed_transcript MGP_C57BL6NJ_T0076131.1 MGP_C57BL6NJ_G0030752.1 mouse_genomes_project 5 153810029 153835573 - Rnf216 protein_coding processed_transcript MGP_C57BL6NJ_T0103218.1 MGP_C57BL6NJ_G0041012.1 mouse_genomes_project 5 150919274 150946527 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100443.1 MGP_C57BL6NJ_G0038489.1 mouse_genomes_project 5 56651307 56651470 - Gm24977 snRNA snRNA MGP_C57BL6NJ_T0101745.1 MGP_C57BL6NJ_G0039791.1 mouse_genomes_project 5 82408257 82408393 + Gm25756 snoRNA snoRNA MGP_C57BL6NJ_T0001700.1 MGP_C57BL6NJ_G0001596.1 mouse_genomes_project 5 49763665 49766581 - TEC TEC MGP_C57BL6NJ_T0074463.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129696163 129775409 + MGP_C57BL6NJ_P0074463 Tmem116 protein_coding protein_coding MGP_C57BL6NJ_T0074464.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129696845 129741816 + MGP_C57BL6NJ_P0074464 Tmem116 protein_coding protein_coding MGP_C57BL6NJ_T0074465.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129696845 129740856 + MGP_C57BL6NJ_P0074465 Tmem116 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074466.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129696895 129727481 + MGP_C57BL6NJ_P0074466 Tmem116 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074467.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129696976 129727481 + Tmem116 protein_coding processed_transcript MGP_C57BL6NJ_T0074468.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129702510 129741596 + MGP_C57BL6NJ_P0074468 Tmem116 protein_coding protein_coding MGP_C57BL6NJ_T0074469.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129707350 129741796 + MGP_C57BL6NJ_P0074469 Tmem116 protein_coding protein_coding MGP_C57BL6NJ_T0074470.1 MGP_C57BL6NJ_G0030457.1 mouse_genomes_project 5 129707350 129741823 + MGP_C57BL6NJ_P0074470 Tmem116 protein_coding protein_coding MGP_C57BL6NJ_T0074934.1 MGP_C57BL6NJ_G0030526.1 mouse_genomes_project 5 133278896 133287685 + MGP_C57BL6NJ_P0074934 Snrnp35 protein_coding protein_coding MGP_C57BL6NJ_T0074935.1 MGP_C57BL6NJ_G0030526.1 mouse_genomes_project 5 133278964 133287051 + MGP_C57BL6NJ_P0074935 Snrnp35 protein_coding protein_coding MGP_C57BL6NJ_T0074936.1 MGP_C57BL6NJ_G0030526.1 mouse_genomes_project 5 133279220 133287668 + MGP_C57BL6NJ_P0074936 Snrnp35 protein_coding protein_coding MGP_C57BL6NJ_T0100438.1 MGP_C57BL6NJ_G0038484.1 mouse_genomes_project 5 38908846 38908982 + Gm22249 snRNA snRNA MGP_C57BL6NJ_T0001805.1 MGP_C57BL6NJ_G0001699.1 mouse_genomes_project 5 70419853 70421143 - TEC TEC MGP_C57BL6NJ_T0102500.1 MGP_C57BL6NJ_G0040368.1 mouse_genomes_project 5 32694877 32701426 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0015551.1 MGP_C57BL6NJ_G0013596.1 mouse_genomes_project 5 134915919 134916452 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071469.1 MGP_C57BL6NJ_G0029866.1 mouse_genomes_project 5 32513695 32578908 + MGP_C57BL6NJ_P0071469 Yes1 protein_coding protein_coding MGP_C57BL6NJ_T0071470.1 MGP_C57BL6NJ_G0029866.1 mouse_genomes_project 5 32513908 32516696 + Yes1 protein_coding retained_intron MGP_C57BL6NJ_T0071471.1 MGP_C57BL6NJ_G0029866.1 mouse_genomes_project 5 32541313 32555101 + MGP_C57BL6NJ_P0071471 Yes1 protein_coding protein_coding MGP_C57BL6NJ_T0001729.1 MGP_C57BL6NJ_G0001624.1 mouse_genomes_project 5 53002519 53006324 - TEC TEC MGP_C57BL6NJ_T0011858.1 MGP_C57BL6NJ_G0009943.1 mouse_genomes_project 5 83390375 83390670 - Gm22553 misc_RNA misc_RNA MGP_C57BL6NJ_T0015468.1 MGP_C57BL6NJ_G0013513.1 mouse_genomes_project 5 102726713 102727605 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072746.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80248332 80265317 + MGP_C57BL6NJ_P0072746 Paics protein_coding protein_coding MGP_C57BL6NJ_T0072747.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80248373 80265321 + MGP_C57BL6NJ_P0072747 Paics protein_coding protein_coding MGP_C57BL6NJ_T0072748.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80248393 80265125 + MGP_C57BL6NJ_P0072748 Paics protein_coding protein_coding MGP_C57BL6NJ_T0072749.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80248407 80256781 + MGP_C57BL6NJ_P0072749 Paics protein_coding protein_coding MGP_C57BL6NJ_T0072750.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80248802 80260085 + MGP_C57BL6NJ_P0072750 Paics protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072751.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80258906 80260576 + Paics protein_coding retained_intron MGP_C57BL6NJ_T0072752.1 MGP_C57BL6NJ_G0030081.1 mouse_genomes_project 5 80263968 80264653 + Paics protein_coding retained_intron MGP_C57BL6NJ_T0099457.1 MGP_C57BL6NJ_G0037514.1 mouse_genomes_project 5 2061337 2063085 - Gm43113 sense_intronic sense_intronic MGP_C57BL6NJ_T0015507.1 MGP_C57BL6NJ_G0013552.1 mouse_genomes_project 5 115491166 115492569 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008258.1 MGP_C57BL6NJ_G0006735.1 mouse_genomes_project 5 29668959 29682801 - Gm42806 lincRNA lincRNA MGP_C57BL6NJ_T0008259.1 MGP_C57BL6NJ_G0006735.1 mouse_genomes_project 5 29678090 29681802 - Gm42806 lincRNA lincRNA MGP_C57BL6NJ_T0010956.1 MGP_C57BL6NJ_G0009041.1 mouse_genomes_project 5 120501895 120501951 - Mir7230 miRNA miRNA MGP_C57BL6NJ_T0001605.1 MGP_C57BL6NJ_G0001504.1 mouse_genomes_project 5 20040453 20041400 + TEC TEC MGP_C57BL6NJ_T0071114.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29818604 29857005 - MGP_C57BL6NJ_P0071114 Hadha protein_coding protein_coding MGP_C57BL6NJ_T0071115.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29819726 29856819 - Hadha protein_coding processed_transcript MGP_C57BL6NJ_T0071116.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29820199 29820606 - Hadha protein_coding processed_transcript MGP_C57BL6NJ_T0071117.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29821769 29827420 - Hadha protein_coding retained_intron MGP_C57BL6NJ_T0071118.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29827036 29835343 - MGP_C57BL6NJ_P0071118 Hadha protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071119.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29829015 29841328 - Hadha protein_coding retained_intron MGP_C57BL6NJ_T0071120.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29833535 29856805 - Hadha protein_coding retained_intron MGP_C57BL6NJ_T0071121.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29847384 29849844 - Hadha protein_coding retained_intron MGP_C57BL6NJ_T0071122.1 MGP_C57BL6NJ_G0029814.1 mouse_genomes_project 5 29855764 29856833 - Hadha protein_coding retained_intron MGP_C57BL6NJ_T0071530.1 MGP_C57BL6NJ_G0029876.1 mouse_genomes_project 5 33435082 33468013 + Uvssa protein_coding retained_intron MGP_C57BL6NJ_T0071531.1 MGP_C57BL6NJ_G0029876.1 mouse_genomes_project 5 33435229 33477235 + MGP_C57BL6NJ_P0071531 Uvssa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071532.1 MGP_C57BL6NJ_G0029876.1 mouse_genomes_project 5 33435229 33477235 + MGP_C57BL6NJ_P0071532 Uvssa protein_coding protein_coding MGP_C57BL6NJ_T0071533.1 MGP_C57BL6NJ_G0029876.1 mouse_genomes_project 5 33435305 33477235 + MGP_C57BL6NJ_P0071533 Uvssa protein_coding protein_coding MGP_C57BL6NJ_T0001569.1 MGP_C57BL6NJ_G0001468.1 mouse_genomes_project 5 843003 846610 - TEC TEC MGP_C57BL6NJ_T0001714.1 MGP_C57BL6NJ_G0001609.1 mouse_genomes_project 5 50058647 50062802 - TEC TEC MGP_C57BL6NJ_T0072821.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88174672 88592929 - MGP_C57BL6NJ_P0072821 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072822.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88177702 88592814 - MGP_C57BL6NJ_P0072822 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072823.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88177702 88592814 - MGP_C57BL6NJ_P0072823 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072824.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88186404 88592814 - MGP_C57BL6NJ_P0072824 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072825.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88186404 88592814 - MGP_C57BL6NJ_P0072825 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072826.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88186404 88593367 - MGP_C57BL6NJ_P0072826 Epha5 protein_coding protein_coding MGP_C57BL6NJ_T0072827.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88239905 88592929 - Epha5 protein_coding retained_intron MGP_C57BL6NJ_T0072828.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88293623 88592929 - Epha5 protein_coding retained_intron MGP_C57BL6NJ_T0072829.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88394932 88593390 - Epha5 protein_coding retained_intron MGP_C57BL6NJ_T0072830.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88505055 88593390 - Epha5 protein_coding retained_intron MGP_C57BL6NJ_T0072831.1 MGP_C57BL6NJ_G0030093.1 mouse_genomes_project 5 88539406 88543083 - Epha5 protein_coding retained_intron MGP_C57BL6NJ_T0008653.1 MGP_C57BL6NJ_G0007014.1 mouse_genomes_project 5 161377963 161388045 - Gm21221 lincRNA lincRNA MGP_C57BL6NJ_T0103214.1 MGP_C57BL6NJ_G0041008.1 mouse_genomes_project 5 134731132 134731815 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0072849.1 MGP_C57BL6NJ_G0030099.1 mouse_genomes_project 5 90733210 90763263 - MGP_C57BL6NJ_P0072849 Tmprss11d protein_coding protein_coding MGP_C57BL6NJ_T0072850.1 MGP_C57BL6NJ_G0030099.1 mouse_genomes_project 5 90733210 90813161 - MGP_C57BL6NJ_P0072850 Tmprss11d protein_coding protein_coding MGP_C57BL6NJ_T0074838.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132651165 132690466 + MGP_C57BL6NJ_P0074838 Ccdc62 protein_coding protein_coding MGP_C57BL6NJ_T0074839.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132651175 132657086 + Ccdc62 protein_coding retained_intron MGP_C57BL6NJ_T0074840.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132651175 132690466 + MGP_C57BL6NJ_P0074840 Ccdc62 protein_coding protein_coding MGP_C57BL6NJ_T0074841.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132665513 132673652 + Ccdc62 protein_coding processed_transcript MGP_C57BL6NJ_T0074842.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132673629 132676736 + Ccdc62 protein_coding retained_intron MGP_C57BL6NJ_T0074843.1 MGP_C57BL6NJ_G0030513.1 mouse_genomes_project 5 132682164 132686646 + Ccdc62 protein_coding retained_intron MGP_C57BL6NJ_T0074471.1 MGP_C57BL6NJ_G0030458.1 mouse_genomes_project 5 129746830 129750284 - MGP_C57BL6NJ_P0074471 protein_coding protein_coding MGP_C57BL6NJ_T0073751.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236478 117239622 - MGP_C57BL6NJ_P0073751 P2rx2 protein_coding protein_coding MGP_C57BL6NJ_T0073752.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236478 117239879 - MGP_C57BL6NJ_P0073752 P2rx2 protein_coding protein_coding MGP_C57BL6NJ_T0073753.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236478 117239622 - MGP_C57BL6NJ_P0073753 P2rx2 protein_coding protein_coding MGP_C57BL6NJ_T0073754.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236479 117239643 - MGP_C57BL6NJ_P0073754 P2rx2 protein_coding protein_coding MGP_C57BL6NJ_T0073755.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236636 117239816 - P2rx2 protein_coding retained_intron MGP_C57BL6NJ_T0073756.1 MGP_C57BL6NJ_G0030315.1 mouse_genomes_project 5 117236636 117239816 - MGP_C57BL6NJ_P0073756 P2rx2 protein_coding protein_coding MGP_C57BL6NJ_T0011862.1 MGP_C57BL6NJ_G0009947.1 mouse_genomes_project 5 106141657 106141726 + Gm27997 misc_RNA misc_RNA MGP_C57BL6NJ_T0075757.1 MGP_C57BL6NJ_G0030673.1 mouse_genomes_project 5 147838647 147839561 + MGP_C57BL6NJ_P0075757 Ppp1r35 protein_coding protein_coding MGP_C57BL6NJ_T0075758.1 MGP_C57BL6NJ_G0030673.1 mouse_genomes_project 5 147838702 147839909 + MGP_C57BL6NJ_P0075758 Ppp1r35 protein_coding protein_coding MGP_C57BL6NJ_T0075759.1 MGP_C57BL6NJ_G0030673.1 mouse_genomes_project 5 147839235 147839905 + MGP_C57BL6NJ_P0075759 Ppp1r35 protein_coding protein_coding MGP_C57BL6NJ_T0075760.1 MGP_C57BL6NJ_G0030673.1 mouse_genomes_project 5 147839342 147839909 + Ppp1r35 protein_coding retained_intron MGP_C57BL6NJ_T0015350.1 MGP_C57BL6NJ_G0013395.1 mouse_genomes_project 5 45130816 45131453 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008563.1 MGP_C57BL6NJ_G0006949.1 mouse_genomes_project 5 135817391 135858919 + Gm42954 lincRNA lincRNA MGP_C57BL6NJ_T0004805.1 MGP_C57BL6NJ_G0004157.1 mouse_genomes_project 5 23535536 23538830 + Gm15589 antisense antisense MGP_C57BL6NJ_T0015505.1 MGP_C57BL6NJ_G0013550.1 mouse_genomes_project 5 114734732 114735318 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015362.1 MGP_C57BL6NJ_G0013407.1 mouse_genomes_project 5 54067282 54070213 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074801.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132429678 132451288 - MGP_C57BL6NJ_P0074801 Rsrc2 protein_coding protein_coding MGP_C57BL6NJ_T0074802.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132429686 132451383 - MGP_C57BL6NJ_P0074802 Rsrc2 protein_coding protein_coding MGP_C57BL6NJ_T0074803.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132429690 132451406 - MGP_C57BL6NJ_P0074803 Rsrc2 protein_coding protein_coding MGP_C57BL6NJ_T0074804.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132429984 132444827 - Rsrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0074805.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132430278 132451374 - MGP_C57BL6NJ_P0074805 Rsrc2 protein_coding protein_coding MGP_C57BL6NJ_T0074806.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132430344 132444852 - MGP_C57BL6NJ_P0074806 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074807.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132430344 132445639 - MGP_C57BL6NJ_P0074807 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074808.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132430344 132445639 - MGP_C57BL6NJ_P0074808 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074809.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132430507 132434958 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0074810.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132431799 132451380 - MGP_C57BL6NJ_P0074810 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074811.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132434632 132451406 - MGP_C57BL6NJ_P0074811 Rsrc2 protein_coding protein_coding MGP_C57BL6NJ_T0074812.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132434866 132451375 - MGP_C57BL6NJ_P0074812 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074813.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132434866 132451376 - MGP_C57BL6NJ_P0074813 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074814.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132436097 132447563 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0074815.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132436152 132442985 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0074816.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132437878 132451365 - MGP_C57BL6NJ_P0074816 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074817.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132437925 132451406 - MGP_C57BL6NJ_P0074817 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074818.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132440934 132451363 - MGP_C57BL6NJ_P0074818 Rsrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074819.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132442053 132451361 - Rsrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0074820.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132443185 132451375 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0074821.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132443187 132451375 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0074822.1 MGP_C57BL6NJ_G0030507.1 mouse_genomes_project 5 132445562 132447224 - Rsrc2 protein_coding retained_intron MGP_C57BL6NJ_T0070895.1 MGP_C57BL6NJ_G0029768.1 mouse_genomes_project 5 23569896 23602450 + MGP_C57BL6NJ_P0070895 Nos3 protein_coding protein_coding MGP_C57BL6NJ_T0070896.1 MGP_C57BL6NJ_G0029768.1 mouse_genomes_project 5 23569896 23602303 + MGP_C57BL6NJ_P0070896 Nos3 protein_coding protein_coding MGP_C57BL6NJ_T0004854.1 MGP_C57BL6NJ_G0004194.1 mouse_genomes_project 5 48920530 48923173 - 4930518C09Rik antisense antisense MGP_C57BL6NJ_T0073438.1 MGP_C57BL6NJ_G0030248.1 mouse_genomes_project 5 110905692 110967803 - MGP_C57BL6NJ_P0073438 Zfp951 protein_coding protein_coding MGP_C57BL6NJ_T0073439.1 MGP_C57BL6NJ_G0030248.1 mouse_genomes_project 5 110934679 110967665 - Zfp951 protein_coding processed_transcript MGP_C57BL6NJ_T0103198.1 MGP_C57BL6NJ_G0040992.1 mouse_genomes_project 5 91466183 91483120 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010921.1 MGP_C57BL6NJ_G0009006.1 mouse_genomes_project 5 33988334 33988396 - Mir7024 miRNA miRNA MGP_C57BL6NJ_T0001878.1 MGP_C57BL6NJ_G0001771.1 mouse_genomes_project 5 110463137 110464389 + TEC TEC MGP_C57BL6NJ_T0008529.1 MGP_C57BL6NJ_G0006931.1 mouse_genomes_project 5 128332967 128339449 - Gm42654 lincRNA lincRNA MGP_C57BL6NJ_T0008530.1 MGP_C57BL6NJ_G0006931.1 mouse_genomes_project 5 128332975 128336040 - Gm42654 lincRNA lincRNA MGP_C57BL6NJ_T0076588.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162330709 162480936 + MGP_C57BL6NJ_P0076588 Pds5b protein_coding protein_coding MGP_C57BL6NJ_T0076589.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162330709 162481761 + MGP_C57BL6NJ_P0076589 Pds5b protein_coding protein_coding MGP_C57BL6NJ_T0076590.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162330797 162481738 + MGP_C57BL6NJ_P0076590 Pds5b protein_coding protein_coding MGP_C57BL6NJ_T0076591.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162416962 162417754 + Pds5b protein_coding retained_intron MGP_C57BL6NJ_T0076592.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162425406 162466558 + MGP_C57BL6NJ_P0076592 Pds5b protein_coding protein_coding MGP_C57BL6NJ_T0076593.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162428467 162438969 + Pds5b protein_coding processed_transcript MGP_C57BL6NJ_T0076594.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162462718 162468847 + Pds5b protein_coding processed_transcript MGP_C57BL6NJ_T0076595.1 MGP_C57BL6NJ_G0030850.1 mouse_genomes_project 5 162473737 162481551 + Pds5b protein_coding retained_intron MGP_C57BL6NJ_T0072456.1 MGP_C57BL6NJ_G0030027.1 mouse_genomes_project 5 70170992 70177103 + MGP_C57BL6NJ_P0072456 Shisa3 protein_coding protein_coding MGP_C57BL6NJ_T0072457.1 MGP_C57BL6NJ_G0030027.1 mouse_genomes_project 5 70171079 70186662 + MGP_C57BL6NJ_P0072457 Shisa3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008390.1 MGP_C57BL6NJ_G0006838.1 mouse_genomes_project 5 102446474 102447633 - Gm9484 lincRNA lincRNA MGP_C57BL6NJ_T0015247.1 MGP_C57BL6NJ_G0013292.1 mouse_genomes_project 5 7616238 7616983 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008320.1 MGP_C57BL6NJ_G0006781.1 mouse_genomes_project 5 60121478 60123761 + 1700029E06Rik lincRNA lincRNA MGP_C57BL6NJ_T0101755.1 MGP_C57BL6NJ_G0039801.1 mouse_genomes_project 5 105554810 105554886 + Gm26252 snoRNA snoRNA MGP_C57BL6NJ_T0008332.1 MGP_C57BL6NJ_G0006790.1 mouse_genomes_project 5 66840081 66856914 - Gm3716 lincRNA lincRNA MGP_C57BL6NJ_T0008333.1 MGP_C57BL6NJ_G0006790.1 mouse_genomes_project 5 66841452 66849384 - Gm3716 lincRNA lincRNA MGP_C57BL6NJ_T0018625.1 MGP_C57BL6NJ_G0015995.1 mouse_genomes_project 5 70023912 70031488 + C330024D21Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018626.1 MGP_C57BL6NJ_G0015995.1 mouse_genomes_project 5 70023915 70038245 + C330024D21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018627.1 MGP_C57BL6NJ_G0015995.1 mouse_genomes_project 5 70023918 70037911 + C330024D21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0072269.1 MGP_C57BL6NJ_G0030001.1 mouse_genomes_project 5 67257698 67339991 + MGP_C57BL6NJ_P0072269 Fam114a1 protein_coding protein_coding MGP_C57BL6NJ_T0072270.1 MGP_C57BL6NJ_G0030001.1 mouse_genomes_project 5 67260470 67296610 + MGP_C57BL6NJ_P0072270 Fam114a1 protein_coding protein_coding MGP_C57BL6NJ_T0015348.1 MGP_C57BL6NJ_G0013393.1 mouse_genomes_project 5 44629669 44630981 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071083.1 MGP_C57BL6NJ_G0029806.1 mouse_genomes_project 5 29065039 29070476 - MGP_C57BL6NJ_P0071083 Mnx1 protein_coding protein_coding MGP_C57BL6NJ_T0071084.1 MGP_C57BL6NJ_G0029806.1 mouse_genomes_project 5 29065266 29070476 - MGP_C57BL6NJ_P0071084 Mnx1 protein_coding protein_coding MGP_C57BL6NJ_T0004981.1 MGP_C57BL6NJ_G0004286.1 mouse_genomes_project 5 131091576 131094961 + Gm43301 antisense antisense MGP_C57BL6NJ_T0015385.1 MGP_C57BL6NJ_G0013430.1 mouse_genomes_project 5 62603315 62605107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070883.1 MGP_C57BL6NJ_G0029765.1 mouse_genomes_project 5 23291595 23358034 + MGP_C57BL6NJ_P0070883 Klhl7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070884.1 MGP_C57BL6NJ_G0029765.1 mouse_genomes_project 5 23291637 23332122 + Klhl7 protein_coding retained_intron MGP_C57BL6NJ_T0070885.1 MGP_C57BL6NJ_G0029765.1 mouse_genomes_project 5 23291744 23361430 + MGP_C57BL6NJ_P0070885 Klhl7 protein_coding protein_coding MGP_C57BL6NJ_T0075418.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145116536 145123407 + MGP_C57BL6NJ_P0075418 Nsun5 protein_coding protein_coding MGP_C57BL6NJ_T0075419.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145116553 145117987 + Nsun5 protein_coding processed_transcript MGP_C57BL6NJ_T0075420.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145116558 145120813 + MGP_C57BL6NJ_P0075420 Nsun5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075421.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145116574 145120674 + MGP_C57BL6NJ_P0075421 Nsun5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075422.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145117160 145119125 + Nsun5 protein_coding retained_intron MGP_C57BL6NJ_T0075423.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145117510 145120693 + Nsun5 protein_coding retained_intron MGP_C57BL6NJ_T0075424.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145117642 145118392 + Nsun5 protein_coding retained_intron MGP_C57BL6NJ_T0075425.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145120250 145123414 + Nsun5 protein_coding retained_intron MGP_C57BL6NJ_T0075426.1 MGP_C57BL6NJ_G0030612.1 mouse_genomes_project 5 145120787 145122752 + Nsun5 protein_coding retained_intron MGP_C57BL6NJ_T0076219.1 MGP_C57BL6NJ_G0030772.1 mouse_genomes_project 5 154692887 154701978 + MGP_C57BL6NJ_P0076219 Gm42421 protein_coding protein_coding MGP_C57BL6NJ_T0015238.1 MGP_C57BL6NJ_G0013283.1 mouse_genomes_project 5 4679440 4680026 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099485.1 MGP_C57BL6NJ_G0037541.1 mouse_genomes_project 5 155082269 155085658 + Gm15708 sense_intronic sense_intronic MGP_C57BL6NJ_T0099486.1 MGP_C57BL6NJ_G0037541.1 mouse_genomes_project 5 155084082 155085624 + Gm15708 sense_intronic sense_intronic MGP_C57BL6NJ_T0073999.1 MGP_C57BL6NJ_G0030364.1 mouse_genomes_project 5 121504709 121524354 - MGP_C57BL6NJ_P0073999 Foxn4 protein_coding protein_coding MGP_C57BL6NJ_T0074000.1 MGP_C57BL6NJ_G0030364.1 mouse_genomes_project 5 121506126 121513660 - MGP_C57BL6NJ_P0074000 Foxn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074001.1 MGP_C57BL6NJ_G0030364.1 mouse_genomes_project 5 121510895 121524249 - MGP_C57BL6NJ_P0074001 Foxn4 protein_coding protein_coding MGP_C57BL6NJ_T0074002.1 MGP_C57BL6NJ_G0030364.1 mouse_genomes_project 5 121513245 121524296 - Foxn4 protein_coding retained_intron MGP_C57BL6NJ_T0001579.1 MGP_C57BL6NJ_G0001478.1 mouse_genomes_project 5 7240416 7243122 - TEC TEC MGP_C57BL6NJ_T0076036.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151161401 151207565 - MGP_C57BL6NJ_P0076036 Iqce protein_coding protein_coding MGP_C57BL6NJ_T0076037.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151163079 151165816 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0076038.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151163079 151207452 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0076039.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151164854 151207526 - MGP_C57BL6NJ_P0076039 Iqce protein_coding protein_coding MGP_C57BL6NJ_T0076040.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151165603 151184791 - MGP_C57BL6NJ_P0076040 Iqce protein_coding protein_coding MGP_C57BL6NJ_T0076041.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151165732 151169204 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0076042.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151184326 151192898 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0076043.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151185105 151207463 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0076044.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151192894 151207156 - Iqce protein_coding processed_transcript MGP_C57BL6NJ_T0076045.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151192899 151207565 - MGP_C57BL6NJ_P0076045 Iqce protein_coding protein_coding MGP_C57BL6NJ_T0076046.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151195747 151207487 - MGP_C57BL6NJ_P0076046 Iqce protein_coding protein_coding MGP_C57BL6NJ_T0076047.1 MGP_C57BL6NJ_G0030735.1 mouse_genomes_project 5 151196145 151207481 - Iqce protein_coding retained_intron MGP_C57BL6NJ_T0072271.1 MGP_C57BL6NJ_G0030002.1 mouse_genomes_project 5 67354414 67392846 - Tmem156 protein_coding processed_transcript MGP_C57BL6NJ_T0072272.1 MGP_C57BL6NJ_G0030002.1 mouse_genomes_project 5 67363766 67392801 - MGP_C57BL6NJ_P0072272 Tmem156 protein_coding protein_coding MGP_C57BL6NJ_T0072273.1 MGP_C57BL6NJ_G0030002.1 mouse_genomes_project 5 67391931 67392842 - Tmem156 protein_coding retained_intron MGP_C57BL6NJ_T0071941.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38700694 38838796 - MGP_C57BL6NJ_P0071941 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071942.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38700694 38835723 - MGP_C57BL6NJ_P0071942 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071943.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38700695 38848617 - MGP_C57BL6NJ_P0071943 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071944.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38700727 38859776 - MGP_C57BL6NJ_P0071944 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071945.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38701060 38862729 - MGP_C57BL6NJ_P0071945 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071946.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38701060 38835575 - MGP_C57BL6NJ_P0071946 Slc2a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071947.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38702504 38835548 - MGP_C57BL6NJ_P0071947 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071948.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38735825 38835599 - MGP_C57BL6NJ_P0071948 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071949.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38772546 38797806 - Slc2a9 protein_coding processed_transcript MGP_C57BL6NJ_T0071950.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38797626 38859703 - MGP_C57BL6NJ_P0071950 Slc2a9 protein_coding protein_coding MGP_C57BL6NJ_T0071951.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38831755 38859785 - Slc2a9 protein_coding processed_transcript MGP_C57BL6NJ_T0071952.1 MGP_C57BL6NJ_G0029943.1 mouse_genomes_project 5 38838402 38848590 - Slc2a9 protein_coding retained_intron MGP_C57BL6NJ_T0070890.1 MGP_C57BL6NJ_G0029767.1 mouse_genomes_project 5 23521215 23531205 - MGP_C57BL6NJ_P0070890 Kcnh2 protein_coding protein_coding MGP_C57BL6NJ_T0070891.1 MGP_C57BL6NJ_G0029767.1 mouse_genomes_project 5 23521215 23556691 - MGP_C57BL6NJ_P0070891 Kcnh2 protein_coding protein_coding MGP_C57BL6NJ_T0070892.1 MGP_C57BL6NJ_G0029767.1 mouse_genomes_project 5 23521709 23523881 - Kcnh2 protein_coding processed_transcript MGP_C57BL6NJ_T0070893.1 MGP_C57BL6NJ_G0029767.1 mouse_genomes_project 5 23526115 23527415 - Kcnh2 protein_coding processed_transcript MGP_C57BL6NJ_T0070894.1 MGP_C57BL6NJ_G0029767.1 mouse_genomes_project 5 23527073 23528145 - Kcnh2 protein_coding processed_transcript MGP_C57BL6NJ_T0074977.1 MGP_C57BL6NJ_G0030534.1 mouse_genomes_project 5 133619279 133647180 - MGP_C57BL6NJ_P0074977 Ccdc92 protein_coding protein_coding MGP_C57BL6NJ_T0074978.1 MGP_C57BL6NJ_G0030534.1 mouse_genomes_project 5 133620755 133646640 - MGP_C57BL6NJ_P0074978 Ccdc92 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074979.1 MGP_C57BL6NJ_G0030534.1 mouse_genomes_project 5 133620931 133636340 - MGP_C57BL6NJ_P0074979 Ccdc92 protein_coding protein_coding MGP_C57BL6NJ_T0004896.1 MGP_C57BL6NJ_G0004231.1 mouse_genomes_project 5 102143115 102146933 - Gm42604 antisense antisense MGP_C57BL6NJ_T0015420.1 MGP_C57BL6NJ_G0013465.1 mouse_genomes_project 5 78517341 78518731 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008391.1 MGP_C57BL6NJ_G0006839.1 mouse_genomes_project 5 102603098 102610014 + Gm43146 lincRNA lincRNA MGP_C57BL6NJ_T0075049.1 MGP_C57BL6NJ_G0030547.1 mouse_genomes_project 5 136647826 136724478 + Glt1d1 protein_coding retained_intron MGP_C57BL6NJ_T0075050.1 MGP_C57BL6NJ_G0030547.1 mouse_genomes_project 5 136647826 136750574 + MGP_C57BL6NJ_P0075050 Glt1d1 protein_coding protein_coding MGP_C57BL6NJ_T0075051.1 MGP_C57BL6NJ_G0030547.1 mouse_genomes_project 5 136678608 136722447 + Glt1d1 protein_coding retained_intron MGP_C57BL6NJ_T0005057.1 MGP_C57BL6NJ_G0004339.1 mouse_genomes_project 5 161023114 161078853 - Gm15997 antisense antisense MGP_C57BL6NJ_T0100470.1 MGP_C57BL6NJ_G0038516.1 mouse_genomes_project 5 105614480 105614579 - Gm22838 snRNA snRNA MGP_C57BL6NJ_T0100486.1 MGP_C57BL6NJ_G0038532.1 mouse_genomes_project 5 129592277 129592435 + Gm24671 snRNA snRNA MGP_C57BL6NJ_T0015326.1 MGP_C57BL6NJ_G0013371.1 mouse_genomes_project 5 33307437 33308482 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001910.1 MGP_C57BL6NJ_G0001803.1 mouse_genomes_project 5 121347266 121349119 + TEC TEC MGP_C57BL6NJ_T0075914.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472782 149526800 + MGP_C57BL6NJ_P0075914 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075915.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472846 149501946 + Sun1 protein_coding retained_intron MGP_C57BL6NJ_T0075916.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472846 149501947 + MGP_C57BL6NJ_P0075916 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075917.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472848 149497346 + MGP_C57BL6NJ_P0075917 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075918.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472850 149500205 + MGP_C57BL6NJ_P0075918 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075919.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472854 149489215 + Sun1 protein_coding retained_intron MGP_C57BL6NJ_T0075920.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472859 149525552 + MGP_C57BL6NJ_P0075920 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075921.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149472864 149500211 + MGP_C57BL6NJ_P0075921 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075922.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149485380 149485728 + Sun1 protein_coding processed_transcript MGP_C57BL6NJ_T0075923.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149485412 149499004 + MGP_C57BL6NJ_P0075923 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075924.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149485466 149525646 + MGP_C57BL6NJ_P0075924 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075925.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149485706 149498968 + MGP_C57BL6NJ_P0075925 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075926.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149497284 149504439 + Sun1 protein_coding processed_transcript MGP_C57BL6NJ_T0075927.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149498882 149503546 + MGP_C57BL6NJ_P0075927 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075928.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149500349 149509232 + MGP_C57BL6NJ_P0075928 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075929.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149504710 149508150 + Sun1 protein_coding retained_intron MGP_C57BL6NJ_T0075930.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149509183 149522370 + MGP_C57BL6NJ_P0075930 Sun1 protein_coding protein_coding MGP_C57BL6NJ_T0075931.1 MGP_C57BL6NJ_G0030708.1 mouse_genomes_project 5 149516588 149525509 + MGP_C57BL6NJ_P0075931 Sun1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101739.1 MGP_C57BL6NJ_G0039785.1 mouse_genomes_project 5 66216688 66216820 - Gm25608 snoRNA snoRNA MGP_C57BL6NJ_T0073940.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971060 120976650 + MGP_C57BL6NJ_P0073940 Iscu protein_coding protein_coding MGP_C57BL6NJ_T0073941.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971115 120976635 + MGP_C57BL6NJ_P0073941 Iscu protein_coding protein_coding MGP_C57BL6NJ_T0073942.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971115 120976160 + MGP_C57BL6NJ_P0073942 Iscu protein_coding protein_coding MGP_C57BL6NJ_T0073943.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971130 120975401 + MGP_C57BL6NJ_P0073943 Iscu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073944.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971317 120976376 + MGP_C57BL6NJ_P0073944 Iscu protein_coding protein_coding MGP_C57BL6NJ_T0073945.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120971337 120976307 + MGP_C57BL6NJ_P0073945 Iscu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073946.1 MGP_C57BL6NJ_G0030353.1 mouse_genomes_project 5 120972159 120976203 + MGP_C57BL6NJ_P0073946 Iscu protein_coding protein_coding MGP_C57BL6NJ_T0001587.1 MGP_C57BL6NJ_G0001486.1 mouse_genomes_project 5 11899214 11903247 + TEC TEC MGP_C57BL6NJ_T0072537.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75528466 75574157 - MGP_C57BL6NJ_P0072537 Cnga1 protein_coding protein_coding MGP_C57BL6NJ_T0072538.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75528466 75544925 - MGP_C57BL6NJ_P0072538 Cnga1 protein_coding protein_coding MGP_C57BL6NJ_T0072539.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75528885 75568424 - MGP_C57BL6NJ_P0072539 Cnga1 protein_coding protein_coding MGP_C57BL6NJ_T0072540.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75540904 75568429 - MGP_C57BL6NJ_P0072540 Cnga1 protein_coding protein_coding MGP_C57BL6NJ_T0072541.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75544799 75559376 - MGP_C57BL6NJ_P0072541 Cnga1 protein_coding protein_coding MGP_C57BL6NJ_T0072542.1 MGP_C57BL6NJ_G0030045.1 mouse_genomes_project 5 75573691 75575677 - Cnga1 protein_coding retained_intron MGP_C57BL6NJ_T0001866.1 MGP_C57BL6NJ_G0001759.1 mouse_genomes_project 5 106557382 106560377 + TEC TEC MGP_C57BL6NJ_T0074437.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129433644 129604011 + MGP_C57BL6NJ_P0074437 Gm15800 protein_coding protein_coding MGP_C57BL6NJ_T0074438.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129510977 129532482 + MGP_C57BL6NJ_P0074438 Gm15800 protein_coding protein_coding MGP_C57BL6NJ_T0074439.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129511580 129533065 + Gm15800 protein_coding retained_intron MGP_C57BL6NJ_T0074440.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129516065 129527480 + MGP_C57BL6NJ_P0074440 Gm15800 protein_coding protein_coding MGP_C57BL6NJ_T0074441.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129535470 129557771 + MGP_C57BL6NJ_P0074441 Gm15800 protein_coding protein_coding MGP_C57BL6NJ_T0074442.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129547456 129550353 + Gm15800 protein_coding processed_transcript MGP_C57BL6NJ_T0074443.1 MGP_C57BL6NJ_G0030453.1 mouse_genomes_project 5 129552970 129555727 + Gm15800 protein_coding processed_transcript MGP_C57BL6NJ_T0001678.1 MGP_C57BL6NJ_G0001574.1 mouse_genomes_project 5 45418446 45421650 - TEC TEC MGP_C57BL6NJ_T0005021.1 MGP_C57BL6NJ_G0004314.1 mouse_genomes_project 5 145957746 145959579 - Gm15701 antisense antisense MGP_C57BL6NJ_T0010923.1 MGP_C57BL6NJ_G0009008.1 mouse_genomes_project 5 34866659 34866779 - Mir467g miRNA miRNA MGP_C57BL6NJ_T0075099.1 MGP_C57BL6NJ_G0030557.1 mouse_genomes_project 5 138889198 138904705 - MGP_C57BL6NJ_P0075099 Zfp11 protein_coding protein_coding MGP_C57BL6NJ_T0073827.1 MGP_C57BL6NJ_G0030327.1 mouse_genomes_project 5 118303095 118360432 + MGP_C57BL6NJ_P0073827 Pitpnb protein_coding protein_coding MGP_C57BL6NJ_T0073828.1 MGP_C57BL6NJ_G0030327.1 mouse_genomes_project 5 118303139 118360432 + MGP_C57BL6NJ_P0073828 Pitpnb protein_coding protein_coding MGP_C57BL6NJ_T0073829.1 MGP_C57BL6NJ_G0030327.1 mouse_genomes_project 5 118303146 118357640 + MGP_C57BL6NJ_P0073829 Pitpnb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0073830.1 MGP_C57BL6NJ_G0030327.1 mouse_genomes_project 5 118318663 118355186 + Pitpnb protein_coding processed_transcript MGP_C57BL6NJ_T0073831.1 MGP_C57BL6NJ_G0030327.1 mouse_genomes_project 5 118352340 118355776 + Pitpnb protein_coding retained_intron MGP_C57BL6NJ_T0015335.1 MGP_C57BL6NJ_G0013380.1 mouse_genomes_project 5 36128551 36128846 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073425.1 MGP_C57BL6NJ_G0030243.1 mouse_genomes_project 5 110309128 110322862 + MGP_C57BL6NJ_P0073425 Ibsp protein_coding protein_coding MGP_C57BL6NJ_T0015416.1 MGP_C57BL6NJ_G0013461.1 mouse_genomes_project 5 78015548 78016449 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074593.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130823978 130833485 + MGP_C57BL6NJ_P0074593 Vps29 protein_coding protein_coding MGP_C57BL6NJ_T0074594.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130823999 130832691 + MGP_C57BL6NJ_P0074594 Vps29 protein_coding protein_coding MGP_C57BL6NJ_T0074595.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130824002 130832436 + Vps29 protein_coding processed_transcript MGP_C57BL6NJ_T0074596.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130824015 130833410 + MGP_C57BL6NJ_P0074596 Vps29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074597.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130824033 130832385 + MGP_C57BL6NJ_P0074597 Vps29 protein_coding protein_coding MGP_C57BL6NJ_T0074598.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130824053 130832467 + MGP_C57BL6NJ_P0074598 Vps29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074599.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130824067 130834998 + MGP_C57BL6NJ_P0074599 Vps29 protein_coding protein_coding MGP_C57BL6NJ_T0074600.1 MGP_C57BL6NJ_G0030477.1 mouse_genomes_project 5 130827825 130831189 + Vps29 protein_coding retained_intron MGP_C57BL6NJ_T0008434.1 MGP_C57BL6NJ_G0006868.1 mouse_genomes_project 5 112823635 112825924 - 4930432H08Rik lincRNA lincRNA MGP_C57BL6NJ_T0073974.1 MGP_C57BL6NJ_G0030359.1 mouse_genomes_project 5 121251691 121322968 - MGP_C57BL6NJ_P0073974 Svop protein_coding protein_coding MGP_C57BL6NJ_T0073975.1 MGP_C57BL6NJ_G0030359.1 mouse_genomes_project 5 121252906 121293580 - Svop protein_coding processed_transcript MGP_C57BL6NJ_T0073976.1 MGP_C57BL6NJ_G0030359.1 mouse_genomes_project 5 121259769 121267619 - Svop protein_coding retained_intron MGP_C57BL6NJ_T0073977.1 MGP_C57BL6NJ_G0030359.1 mouse_genomes_project 5 121278504 121322778 - Svop protein_coding retained_intron MGP_C57BL6NJ_T0073978.1 MGP_C57BL6NJ_G0030359.1 mouse_genomes_project 5 121279271 121322765 - MGP_C57BL6NJ_P0073978 Svop protein_coding protein_coding MGP_C57BL6NJ_T0015233.1 MGP_C57BL6NJ_G0013278.1 mouse_genomes_project 5 2859113 2859543 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015368.1 MGP_C57BL6NJ_G0013413.1 mouse_genomes_project 5 56960199 56960506 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098881.1 MGP_C57BL6NJ_G0036945.1 mouse_genomes_project 5 145433625 145434007 - pseudogene pseudogene MGP_C57BL6NJ_T0075957.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149673863 149676220 + Gpr146 protein_coding processed_transcript MGP_C57BL6NJ_T0075958.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149673908 149676221 + Gpr146 protein_coding processed_transcript MGP_C57BL6NJ_T0075959.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149674329 149688658 + MGP_C57BL6NJ_P0075959 Gpr146 protein_coding protein_coding MGP_C57BL6NJ_T0075960.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149674386 149675426 + MGP_C57BL6NJ_P0075960 Gpr146 protein_coding protein_coding MGP_C57BL6NJ_T0075961.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149676747 149692310 + MGP_C57BL6NJ_P0075961 Gpr146 protein_coding protein_coding MGP_C57BL6NJ_T0075962.1 MGP_C57BL6NJ_G0030714.1 mouse_genomes_project 5 149686027 149692309 + MGP_C57BL6NJ_P0075962 Gpr146 protein_coding protein_coding MGP_C57BL6NJ_T0001920.1 MGP_C57BL6NJ_G0001813.1 mouse_genomes_project 5 124425151 124425584 + TEC TEC MGP_C57BL6NJ_T0073979.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121293822 121320865 + Usp30 protein_coding processed_transcript MGP_C57BL6NJ_T0073980.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121293875 121337289 + MGP_C57BL6NJ_P0073980 Usp30 protein_coding protein_coding MGP_C57BL6NJ_T0073981.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121294111 121318389 + Usp30 protein_coding processed_transcript MGP_C57BL6NJ_T0073982.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121331752 121356158 + MGP_C57BL6NJ_P0073982 Usp30 protein_coding protein_coding MGP_C57BL6NJ_T0073983.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121331797 121352534 + MGP_C57BL6NJ_P0073983 Usp30 protein_coding protein_coding MGP_C57BL6NJ_T0073984.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121335149 121343756 + Usp30 protein_coding retained_intron MGP_C57BL6NJ_T0073985.1 MGP_C57BL6NJ_G0030360.1 mouse_genomes_project 5 121342565 121343085 + Usp30 protein_coding retained_intron MGP_C57BL6NJ_T0074413.1 MGP_C57BL6NJ_G0030445.1 mouse_genomes_project 5 128858395 128866118 - MGP_C57BL6NJ_P0074413 protein_coding protein_coding MGP_C57BL6NJ_T0074414.1 MGP_C57BL6NJ_G0030445.1 mouse_genomes_project 5 128858610 128866118 - MGP_C57BL6NJ_P0074414 protein_coding protein_coding MGP_C57BL6NJ_T0074111.1 MGP_C57BL6NJ_G0030385.1 mouse_genomes_project 5 122381330 122476053 + MGP_C57BL6NJ_P0074111 Sppl3 protein_coding protein_coding MGP_C57BL6NJ_T0074112.1 MGP_C57BL6NJ_G0030385.1 mouse_genomes_project 5 122381339 122437922 + Sppl3 protein_coding processed_transcript MGP_C57BL6NJ_T0074113.1 MGP_C57BL6NJ_G0030385.1 mouse_genomes_project 5 122381690 122462309 + MGP_C57BL6NJ_P0074113 Sppl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074114.1 MGP_C57BL6NJ_G0030385.1 mouse_genomes_project 5 122450350 122452856 + Sppl3 protein_coding retained_intron MGP_C57BL6NJ_T0074115.1 MGP_C57BL6NJ_G0030385.1 mouse_genomes_project 5 122472019 122475519 + Sppl3 protein_coding retained_intron MGP_C57BL6NJ_T0099482.1 MGP_C57BL6NJ_G0037538.1 mouse_genomes_project 5 143901644 143902060 - Gm43480 sense_intronic sense_intronic MGP_C57BL6NJ_T0015411.1 MGP_C57BL6NJ_G0013456.1 mouse_genomes_project 5 75326453 75326967 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001842.1 MGP_C57BL6NJ_G0001735.1 mouse_genomes_project 5 85478365 85479312 + TEC TEC MGP_C57BL6NJ_T0076351.1 MGP_C57BL6NJ_G0030806.1 mouse_genomes_project 5 157317747 157323173 - MGP_C57BL6NJ_P0076351 1700001J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0076352.1 MGP_C57BL6NJ_G0030806.1 mouse_genomes_project 5 157317756 157319602 - 1700001J03Rik protein_coding retained_intron MGP_C57BL6NJ_T0076404.1 MGP_C57BL6NJ_G0030820.1 mouse_genomes_project 5 158225744 158291441 - MGP_C57BL6NJ_P0076404 Lnx2 protein_coding protein_coding MGP_C57BL6NJ_T0076405.1 MGP_C57BL6NJ_G0030820.1 mouse_genomes_project 5 158227351 158228123 - Lnx2 protein_coding processed_transcript MGP_C57BL6NJ_T0015569.1 MGP_C57BL6NJ_G0013614.1 mouse_genomes_project 5 148033392 148034134 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004855.1 MGP_C57BL6NJ_G0004195.1 mouse_genomes_project 5 49498249 49510727 + Gm20700 antisense antisense MGP_C57BL6NJ_T0010937.1 MGP_C57BL6NJ_G0009022.1 mouse_genomes_project 5 72056702 72056808 + Gm24368 miRNA miRNA MGP_C57BL6NJ_T0072507.1 MGP_C57BL6NJ_G0030039.1 mouse_genomes_project 5 74434580 74537529 - MGP_C57BL6NJ_P0072507 Gabra4 protein_coding protein_coding MGP_C57BL6NJ_T0072508.1 MGP_C57BL6NJ_G0030039.1 mouse_genomes_project 5 74436032 74537202 - MGP_C57BL6NJ_P0072508 Gabra4 protein_coding protein_coding MGP_C57BL6NJ_T0072509.1 MGP_C57BL6NJ_G0030039.1 mouse_genomes_project 5 74436437 74537111 - MGP_C57BL6NJ_P0072509 Gabra4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072510.1 MGP_C57BL6NJ_G0030039.1 mouse_genomes_project 5 74436886 74537096 - MGP_C57BL6NJ_P0072510 Gabra4 protein_coding protein_coding MGP_C57BL6NJ_T0072511.1 MGP_C57BL6NJ_G0030039.1 mouse_genomes_project 5 74534416 74537041 - Gabra4 protein_coding retained_intron MGP_C57BL6NJ_T0015440.1 MGP_C57BL6NJ_G0013485.1 mouse_genomes_project 5 91612077 91612153 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004892.1 MGP_C57BL6NJ_G0004227.1 mouse_genomes_project 5 95242940 95261592 - Gm43449 antisense antisense MGP_C57BL6NJ_T0074964.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133457211 133466054 + Atp6v0a2 protein_coding processed_transcript MGP_C57BL6NJ_T0074965.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133457687 133492589 + MGP_C57BL6NJ_P0074965 Atp6v0a2 protein_coding protein_coding MGP_C57BL6NJ_T0074966.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133457700 133490274 + MGP_C57BL6NJ_P0074966 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074967.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133457804 133470129 + Atp6v0a2 protein_coding retained_intron MGP_C57BL6NJ_T0074968.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133482388 133485993 + Atp6v0a2 protein_coding processed_transcript MGP_C57BL6NJ_T0074969.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133483955 133491735 + Atp6v0a2 protein_coding retained_intron MGP_C57BL6NJ_T0074970.1 MGP_C57BL6NJ_G0030532.1 mouse_genomes_project 5 133486296 133489951 + MGP_C57BL6NJ_P0074970 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070672.1 MGP_C57BL6NJ_G0029724.1 mouse_genomes_project 5 10557788 10812055 + MGP_C57BL6NJ_P0070672 Sema3d protein_coding protein_coding MGP_C57BL6NJ_T0070673.1 MGP_C57BL6NJ_G0029724.1 mouse_genomes_project 5 10557909 10781864 + Sema3d protein_coding processed_transcript MGP_C57BL6NJ_T0070674.1 MGP_C57BL6NJ_G0029724.1 mouse_genomes_project 5 10557909 10802268 + MGP_C57BL6NJ_P0070674 Sema3d protein_coding protein_coding MGP_C57BL6NJ_T0070675.1 MGP_C57BL6NJ_G0029724.1 mouse_genomes_project 5 10684450 10725218 + Sema3d protein_coding processed_transcript MGP_C57BL6NJ_T0070676.1 MGP_C57BL6NJ_G0029724.1 mouse_genomes_project 5 10799231 10811859 + Sema3d protein_coding processed_transcript MGP_C57BL6NJ_T0072995.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94943856 94953914 - MGP_C57BL6NJ_P0072995 Cox18 protein_coding protein_coding MGP_C57BL6NJ_T0072996.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94943856 94953885 - MGP_C57BL6NJ_P0072996 Cox18 protein_coding protein_coding MGP_C57BL6NJ_T0072997.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94943859 94944714 - Cox18 protein_coding processed_transcript MGP_C57BL6NJ_T0072998.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94943859 94947792 - Cox18 protein_coding retained_intron MGP_C57BL6NJ_T0072999.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94943862 94945155 - Cox18 protein_coding retained_intron MGP_C57BL6NJ_T0073000.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94947446 94949704 - Cox18 protein_coding retained_intron MGP_C57BL6NJ_T0073001.1 MGP_C57BL6NJ_G0030148.1 mouse_genomes_project 5 94948847 94953852 - MGP_C57BL6NJ_P0073001 Cox18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008625.1 MGP_C57BL6NJ_G0006995.1 mouse_genomes_project 5 159056077 159059738 + Gm43156 lincRNA lincRNA MGP_C57BL6NJ_T0100448.1 MGP_C57BL6NJ_G0038494.1 mouse_genomes_project 5 72097458 72097565 - Gm23932 snRNA snRNA MGP_C57BL6NJ_T0015556.1 MGP_C57BL6NJ_G0013601.1 mouse_genomes_project 5 144720378 144720550 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102274.1 MGP_C57BL6NJ_G0040259.1 mouse_genomes_project 5 80901824 80902211 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102275.1 MGP_C57BL6NJ_G0040259.1 mouse_genomes_project 5 80901840 80902395 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0075191.1 MGP_C57BL6NJ_G0030575.1 mouse_genomes_project 5 139516854 139526342 - MGP_C57BL6NJ_P0075191 Sbds protein_coding protein_coding MGP_C57BL6NJ_T0075192.1 MGP_C57BL6NJ_G0030575.1 mouse_genomes_project 5 139517528 139526217 - MGP_C57BL6NJ_P0075192 Sbds protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075193.1 MGP_C57BL6NJ_G0030575.1 mouse_genomes_project 5 139519007 139524897 - MGP_C57BL6NJ_P0075193 Sbds protein_coding protein_coding MGP_C57BL6NJ_T0075194.1 MGP_C57BL6NJ_G0030575.1 mouse_genomes_project 5 139519554 139526304 - Sbds protein_coding processed_transcript MGP_C57BL6NJ_T0075195.1 MGP_C57BL6NJ_G0030575.1 mouse_genomes_project 5 139521663 139526290 - Sbds protein_coding processed_transcript MGP_C57BL6NJ_T0001889.1 MGP_C57BL6NJ_G0001782.1 mouse_genomes_project 5 115186381 115189655 - TEC TEC MGP_C57BL6NJ_T0071143.1 MGP_C57BL6NJ_G0029818.1 mouse_genomes_project 5 29990183 30034598 + MGP_C57BL6NJ_P0071143 Drc1 protein_coding protein_coding MGP_C57BL6NJ_T0071144.1 MGP_C57BL6NJ_G0029818.1 mouse_genomes_project 5 30003935 30004926 + Drc1 protein_coding processed_transcript MGP_C57BL6NJ_T0071145.1 MGP_C57BL6NJ_G0029818.1 mouse_genomes_project 5 30008065 30023631 + Drc1 protein_coding processed_transcript MGP_C57BL6NJ_T0071146.1 MGP_C57BL6NJ_G0029818.1 mouse_genomes_project 5 30017771 30024254 + Drc1 protein_coding processed_transcript MGP_C57BL6NJ_T0074941.1 MGP_C57BL6NJ_G0030528.1 mouse_genomes_project 5 133356298 133366106 + MGP_C57BL6NJ_P0074941 Tmed2 protein_coding protein_coding MGP_C57BL6NJ_T0074942.1 MGP_C57BL6NJ_G0030528.1 mouse_genomes_project 5 133356558 133364789 + MGP_C57BL6NJ_P0074942 Tmed2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074943.1 MGP_C57BL6NJ_G0030528.1 mouse_genomes_project 5 133356932 133365007 + MGP_C57BL6NJ_P0074943 Tmed2 protein_coding protein_coding MGP_C57BL6NJ_T0074944.1 MGP_C57BL6NJ_G0030528.1 mouse_genomes_project 5 133356939 133357357 + Tmed2 protein_coding retained_intron MGP_C57BL6NJ_T0074945.1 MGP_C57BL6NJ_G0030528.1 mouse_genomes_project 5 133358676 133366096 + MGP_C57BL6NJ_P0074945 Tmed2 protein_coding protein_coding MGP_C57BL6NJ_T0015406.1 MGP_C57BL6NJ_G0013451.1 mouse_genomes_project 5 72175894 72176486 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015557.1 MGP_C57BL6NJ_G0013602.1 mouse_genomes_project 5 145425966 145426324 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004788.1 MGP_C57BL6NJ_G0004142.1 mouse_genomes_project 5 568933 570381 - Gm42435 antisense antisense MGP_C57BL6NJ_T0001574.1 MGP_C57BL6NJ_G0001473.1 mouse_genomes_project 5 5998849 6002642 - TEC TEC MGP_C57BL6NJ_T0072140.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53247037 53289825 - MGP_C57BL6NJ_P0072140 Dhx15 protein_coding protein_coding MGP_C57BL6NJ_T0072141.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53247527 53289688 - MGP_C57BL6NJ_P0072141 Dhx15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072142.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53250158 53254633 - Dhx15 protein_coding retained_intron MGP_C57BL6NJ_T0072143.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53250560 53289800 - MGP_C57BL6NJ_P0072143 Dhx15 protein_coding protein_coding MGP_C57BL6NJ_T0072144.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53255494 53258463 - Dhx15 protein_coding retained_intron MGP_C57BL6NJ_T0072145.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53263594 53289805 - MGP_C57BL6NJ_P0072145 Dhx15 protein_coding protein_coding MGP_C57BL6NJ_T0072146.1 MGP_C57BL6NJ_G0029974.1 mouse_genomes_project 5 53284125 53286725 - Dhx15 protein_coding retained_intron MGP_C57BL6NJ_T0008325.1 MGP_C57BL6NJ_G0006785.1 mouse_genomes_project 5 66591968 66595213 + Gm43838 lincRNA lincRNA MGP_C57BL6NJ_T0008392.1 MGP_C57BL6NJ_G0006840.1 mouse_genomes_project 5 102658690 102671926 + Gm2861 lincRNA lincRNA MGP_C57BL6NJ_T0074288.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125022548 125031997 + Wsb2 protein_coding retained_intron MGP_C57BL6NJ_T0074289.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125022548 125045714 + MGP_C57BL6NJ_P0074289 Wsb2 protein_coding protein_coding MGP_C57BL6NJ_T0074290.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125026242 125036131 + Wsb2 protein_coding processed_transcript MGP_C57BL6NJ_T0074291.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125028742 125044926 + MGP_C57BL6NJ_P0074291 Wsb2 protein_coding protein_coding MGP_C57BL6NJ_T0074292.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125040859 125042688 + Wsb2 protein_coding retained_intron MGP_C57BL6NJ_T0074293.1 MGP_C57BL6NJ_G0030417.1 mouse_genomes_project 5 125041657 125042723 + Wsb2 protein_coding retained_intron MGP_C57BL6NJ_T0015275.1 MGP_C57BL6NJ_G0013320.1 mouse_genomes_project 5 20665063 20665698 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008351.1 MGP_C57BL6NJ_G0006804.1 mouse_genomes_project 5 78086945 78106241 + Gm6116 lincRNA lincRNA MGP_C57BL6NJ_T0001600.1 MGP_C57BL6NJ_G0001499.1 mouse_genomes_project 5 15199327 15200320 + TEC TEC MGP_C57BL6NJ_T0073680.1 MGP_C57BL6NJ_G0030296.1 mouse_genomes_project 5 115450419 115469191 - MGP_C57BL6NJ_P0073680 Tmed11 protein_coding protein_coding MGP_C57BL6NJ_T0001838.1 MGP_C57BL6NJ_G0001731.1 mouse_genomes_project 5 79065269 79067391 + TEC TEC MGP_C57BL6NJ_T0018585.1 MGP_C57BL6NJ_G0015981.1 mouse_genomes_project 5 2396584 2399247 - Gm43623 processed_transcript processed_transcript MGP_C57BL6NJ_T0004823.1 MGP_C57BL6NJ_G0004171.1 mouse_genomes_project 5 32695604 32699456 - antisense antisense MGP_C57BL6NJ_T0001884.1 MGP_C57BL6NJ_G0001777.1 mouse_genomes_project 5 113661322 113663405 - TEC TEC MGP_C57BL6NJ_T0076252.1 MGP_C57BL6NJ_G0030781.1 mouse_genomes_project 5 155392425 155406101 + MGP_C57BL6NJ_P0076252 Nptx2 protein_coding protein_coding MGP_C57BL6NJ_T0073103.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97174283 97201313 - MGP_C57BL6NJ_P0073103 Sdad1 protein_coding protein_coding MGP_C57BL6NJ_T0073104.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97177014 97201183 - MGP_C57BL6NJ_P0073104 Sdad1 protein_coding protein_coding MGP_C57BL6NJ_T0073105.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97182014 97187279 - Sdad1 protein_coding retained_intron MGP_C57BL6NJ_T0073106.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97182840 97191601 - Sdad1 protein_coding retained_intron MGP_C57BL6NJ_T0073107.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97192902 97201278 - Sdad1 protein_coding retained_intron MGP_C57BL6NJ_T0073108.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97194942 97195948 - Sdad1 protein_coding retained_intron MGP_C57BL6NJ_T0073109.1 MGP_C57BL6NJ_G0030177.1 mouse_genomes_project 5 97197023 97201768 - MGP_C57BL6NJ_P0073109 Sdad1 protein_coding protein_coding MGP_C57BL6NJ_T0073971.1 MGP_C57BL6NJ_G0030358.1 mouse_genomes_project 5 121226248 121250237 + MGP_C57BL6NJ_P0073971 Dao protein_coding protein_coding MGP_C57BL6NJ_T0073972.1 MGP_C57BL6NJ_G0030358.1 mouse_genomes_project 5 121234666 121240280 + MGP_C57BL6NJ_P0073972 Dao protein_coding protein_coding MGP_C57BL6NJ_T0073973.1 MGP_C57BL6NJ_G0030358.1 mouse_genomes_project 5 121241873 121244786 + Dao protein_coding retained_intron MGP_C57BL6NJ_T0008309.1 MGP_C57BL6NJ_G0006770.1 mouse_genomes_project 5 51143441 51148204 + 4930448I18Rik lincRNA lincRNA MGP_C57BL6NJ_T0015592.1 MGP_C57BL6NJ_G0013637.1 mouse_genomes_project 5 156191442 156191941 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072225.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64699066 64708999 - Arap2 protein_coding retained_intron MGP_C57BL6NJ_T0072226.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64699067 64863549 - MGP_C57BL6NJ_P0072226 Arap2 protein_coding protein_coding MGP_C57BL6NJ_T0072227.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64738655 64742461 - Arap2 protein_coding retained_intron MGP_C57BL6NJ_T0072228.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64745756 64749791 - Arap2 protein_coding retained_intron MGP_C57BL6NJ_T0072229.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64784575 64791457 - Arap2 protein_coding retained_intron MGP_C57BL6NJ_T0072230.1 MGP_C57BL6NJ_G0029991.1 mouse_genomes_project 5 64863215 64880060 - MGP_C57BL6NJ_P0072230 Arap2 protein_coding protein_coding MGP_C57BL6NJ_T0008562.1 MGP_C57BL6NJ_G0006948.1 mouse_genomes_project 5 135761905 135781924 - Gm42953 lincRNA lincRNA MGP_C57BL6NJ_T0015234.1 MGP_C57BL6NJ_G0013279.1 mouse_genomes_project 5 3703447 3703802 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015311.1 MGP_C57BL6NJ_G0013356.1 mouse_genomes_project 5 29330498 29330877 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072280.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505849 67573611 + MGP_C57BL6NJ_P0072280 Wdr19 protein_coding protein_coding MGP_C57BL6NJ_T0072281.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505851 67573620 + MGP_C57BL6NJ_P0072281 Wdr19 protein_coding protein_coding MGP_C57BL6NJ_T0072282.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505853 67511468 + Wdr19 protein_coding retained_intron MGP_C57BL6NJ_T0072283.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505870 67556220 + Wdr19 protein_coding retained_intron MGP_C57BL6NJ_T0072284.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505884 67538664 + Wdr19 protein_coding retained_intron MGP_C57BL6NJ_T0072285.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67505893 67531924 + Wdr19 protein_coding retained_intron MGP_C57BL6NJ_T0072286.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67508768 67573615 + Wdr19 protein_coding retained_intron MGP_C57BL6NJ_T0072287.1 MGP_C57BL6NJ_G0030004.1 mouse_genomes_project 5 67569629 67573614 + MGP_C57BL6NJ_P0072287 Wdr19 protein_coding protein_coding MGP_C57BL6NJ_T0008315.1 MGP_C57BL6NJ_G0006776.1 mouse_genomes_project 5 54145018 54159134 + Gm42746 lincRNA lincRNA MGP_C57BL6NJ_T0070728.1 MGP_C57BL6NJ_G0029738.1 mouse_genomes_project 5 16986639 17089009 - MGP_C57BL6NJ_P0070728 Gnai1 protein_coding protein_coding MGP_C57BL6NJ_T0001666.1 MGP_C57BL6NJ_G0001562.1 mouse_genomes_project 5 44634606 44635153 + TEC TEC MGP_C57BL6NJ_T0073308.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106253473 106284050 + MGP_C57BL6NJ_P0073308 Cops4 protein_coding protein_coding MGP_C57BL6NJ_T0073309.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106253607 106268603 + Cops4 protein_coding retained_intron MGP_C57BL6NJ_T0073310.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106253621 106273976 + MGP_C57BL6NJ_P0073310 Cops4 protein_coding protein_coding MGP_C57BL6NJ_T0073311.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106253636 106269899 + MGP_C57BL6NJ_P0073311 Cops4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073312.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106253901 106273862 + MGP_C57BL6NJ_P0073312 Cops4 protein_coding protein_coding MGP_C57BL6NJ_T0073313.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106265147 106280177 + MGP_C57BL6NJ_P0073313 Cops4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073314.1 MGP_C57BL6NJ_G0030218.1 mouse_genomes_project 5 106268749 106284027 + Cops4 protein_coding retained_intron MGP_C57BL6NJ_T0002018.1 MGP_C57BL6NJ_G0001909.1 mouse_genomes_project 5 144621795 144623417 - TEC TEC MGP_C57BL6NJ_T0072495.1 MGP_C57BL6NJ_G0030036.1 mouse_genomes_project 5 73550686 73663526 - MGP_C57BL6NJ_P0072495 Gabrg1 protein_coding protein_coding MGP_C57BL6NJ_T0072496.1 MGP_C57BL6NJ_G0030036.1 mouse_genomes_project 5 73552927 73663113 - MGP_C57BL6NJ_P0072496 Gabrg1 protein_coding protein_coding MGP_C57BL6NJ_T0072497.1 MGP_C57BL6NJ_G0030036.1 mouse_genomes_project 5 73572589 73663223 - Gabrg1 protein_coding retained_intron MGP_C57BL6NJ_T0072498.1 MGP_C57BL6NJ_G0030036.1 mouse_genomes_project 5 73628351 73663223 - Gabrg1 protein_coding retained_intron MGP_C57BL6NJ_T0001667.1 MGP_C57BL6NJ_G0001563.1 mouse_genomes_project 5 44634610 44635152 - TEC TEC MGP_C57BL6NJ_T0070424.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 616554 643002 + MGP_C57BL6NJ_P0070424 Fam133b protein_coding protein_coding MGP_C57BL6NJ_T0070425.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 616557 633812 + Fam133b protein_coding retained_intron MGP_C57BL6NJ_T0070426.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 616559 642504 + MGP_C57BL6NJ_P0070426 Fam133b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070427.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 616559 642504 + MGP_C57BL6NJ_P0070427 Fam133b protein_coding protein_coding MGP_C57BL6NJ_T0070428.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 616565 642577 + Fam133b protein_coding retained_intron MGP_C57BL6NJ_T0070429.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 632427 637483 + Fam133b protein_coding retained_intron MGP_C57BL6NJ_T0070430.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 637798 638490 + Fam133b protein_coding retained_intron MGP_C57BL6NJ_T0070431.1 MGP_C57BL6NJ_G0029687.1 mouse_genomes_project 5 639601 641795 + Fam133b protein_coding retained_intron MGP_C57BL6NJ_T0099120.1 MGP_C57BL6NJ_G0037184.1 mouse_genomes_project 5 113927102 113927221 + n-R5s173 rRNA rRNA MGP_C57BL6NJ_T0070967.1 MGP_C57BL6NJ_G0029780.1 mouse_genomes_project 5 23806756 23822817 - MGP_C57BL6NJ_P0070967 Abcf2 protein_coding protein_coding MGP_C57BL6NJ_T0101723.1 MGP_C57BL6NJ_G0039769.1 mouse_genomes_project 5 17626521 17626649 + Gm23822 snoRNA snoRNA MGP_C57BL6NJ_T0015534.1 MGP_C57BL6NJ_G0013579.1 mouse_genomes_project 5 122939010 122939511 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001993.1 MGP_C57BL6NJ_G0001885.1 mouse_genomes_project 5 141097139 141098272 - TEC TEC MGP_C57BL6NJ_T0071132.1 MGP_C57BL6NJ_G0029816.1 mouse_genomes_project 5 29900495 29918125 - MGP_C57BL6NJ_P0071132 Adgrf3 protein_coding protein_coding MGP_C57BL6NJ_T0071133.1 MGP_C57BL6NJ_G0029816.1 mouse_genomes_project 5 29900499 29904986 - MGP_C57BL6NJ_P0071133 Adgrf3 protein_coding protein_coding MGP_C57BL6NJ_T0071134.1 MGP_C57BL6NJ_G0029816.1 mouse_genomes_project 5 29910874 29916990 - Adgrf3 protein_coding processed_transcript MGP_C57BL6NJ_T0008459.1 MGP_C57BL6NJ_G0006884.1 mouse_genomes_project 5 117584065 117585672 + Gm42595 lincRNA lincRNA MGP_C57BL6NJ_T0100440.1 MGP_C57BL6NJ_G0038486.1 mouse_genomes_project 5 40923363 40923543 - Gm23022 snRNA snRNA MGP_C57BL6NJ_T0073046.1 MGP_C57BL6NJ_G0030162.1 mouse_genomes_project 5 95658253 95660321 + MGP_C57BL6NJ_P0073046 Cxcl2 protein_coding protein_coding MGP_C57BL6NJ_T0073047.1 MGP_C57BL6NJ_G0030162.1 mouse_genomes_project 5 95658255 95660321 + Cxcl2 protein_coding retained_intron MGP_C57BL6NJ_T0073048.1 MGP_C57BL6NJ_G0030162.1 mouse_genomes_project 5 95658255 95658744 + Cxcl2 protein_coding retained_intron MGP_C57BL6NJ_T0073049.1 MGP_C57BL6NJ_G0030162.1 mouse_genomes_project 5 95658255 95660321 + MGP_C57BL6NJ_P0073049 Cxcl2 protein_coding protein_coding MGP_C57BL6NJ_T0075396.1 MGP_C57BL6NJ_G0030606.1 mouse_genomes_project 5 144879070 144897710 + MGP_C57BL6NJ_P0075396 Tbl2 protein_coding protein_coding MGP_C57BL6NJ_T0075397.1 MGP_C57BL6NJ_G0030606.1 mouse_genomes_project 5 144879099 144890741 + MGP_C57BL6NJ_P0075397 Tbl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075398.1 MGP_C57BL6NJ_G0030606.1 mouse_genomes_project 5 144879099 144886977 + MGP_C57BL6NJ_P0075398 Tbl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075399.1 MGP_C57BL6NJ_G0030606.1 mouse_genomes_project 5 144879104 144883816 + MGP_C57BL6NJ_P0075399 Tbl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075400.1 MGP_C57BL6NJ_G0030606.1 mouse_genomes_project 5 144882131 144887015 + MGP_C57BL6NJ_P0075400 Tbl2 protein_coding protein_coding MGP_C57BL6NJ_T0071931.1 MGP_C57BL6NJ_G0029940.1 mouse_genomes_project 5 38608993 38618446 + MGP_C57BL6NJ_P0071931 Tmem128 protein_coding protein_coding MGP_C57BL6NJ_T0071932.1 MGP_C57BL6NJ_G0029940.1 mouse_genomes_project 5 38609179 38611118 + Tmem128 protein_coding retained_intron MGP_C57BL6NJ_T0071933.1 MGP_C57BL6NJ_G0029940.1 mouse_genomes_project 5 38609192 38616715 + MGP_C57BL6NJ_P0071933 Tmem128 protein_coding protein_coding MGP_C57BL6NJ_T0071934.1 MGP_C57BL6NJ_G0029940.1 mouse_genomes_project 5 38609195 38614199 + Tmem128 protein_coding retained_intron MGP_C57BL6NJ_T0071935.1 MGP_C57BL6NJ_G0029940.1 mouse_genomes_project 5 38613705 38616712 + MGP_C57BL6NJ_P0071935 Tmem128 protein_coding protein_coding MGP_C57BL6NJ_T0001875.1 MGP_C57BL6NJ_G0001768.1 mouse_genomes_project 5 109837713 109838041 - TEC TEC MGP_C57BL6NJ_T0008466.1 MGP_C57BL6NJ_G0006888.1 mouse_genomes_project 5 118739554 118770589 - E130006D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0008467.1 MGP_C57BL6NJ_G0006888.1 mouse_genomes_project 5 118739573 118770611 - E130006D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0008468.1 MGP_C57BL6NJ_G0006888.1 mouse_genomes_project 5 118739680 118770586 - E130006D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0075522.1 MGP_C57BL6NJ_G0030631.1 mouse_genomes_project 5 145977215 145983530 + MGP_C57BL6NJ_P0075522 Polr2j protein_coding protein_coding MGP_C57BL6NJ_T0075523.1 MGP_C57BL6NJ_G0030631.1 mouse_genomes_project 5 145977215 145983306 + MGP_C57BL6NJ_P0075523 Polr2j protein_coding protein_coding MGP_C57BL6NJ_T0075524.1 MGP_C57BL6NJ_G0030631.1 mouse_genomes_project 5 145977286 145983519 + MGP_C57BL6NJ_P0075524 Polr2j protein_coding protein_coding MGP_C57BL6NJ_T0073423.1 MGP_C57BL6NJ_G0030241.1 mouse_genomes_project 5 110177182 110186598 + MGP_C57BL6NJ_P0073423 Dspp protein_coding protein_coding MGP_C57BL6NJ_T0076187.1 MGP_C57BL6NJ_G0030766.1 mouse_genomes_project 5 154414021 154418949 + Cyth3 protein_coding retained_intron MGP_C57BL6NJ_T0076188.1 MGP_C57BL6NJ_G0030766.1 mouse_genomes_project 5 154414160 154504648 + MGP_C57BL6NJ_P0076188 Cyth3 protein_coding protein_coding MGP_C57BL6NJ_T0076189.1 MGP_C57BL6NJ_G0030766.1 mouse_genomes_project 5 154425585 154489397 + MGP_C57BL6NJ_P0076189 Cyth3 protein_coding protein_coding MGP_C57BL6NJ_T0076190.1 MGP_C57BL6NJ_G0030766.1 mouse_genomes_project 5 154427870 154489299 + MGP_C57BL6NJ_P0076190 Cyth3 protein_coding protein_coding MGP_C57BL6NJ_T0076001.1 MGP_C57BL6NJ_G0030725.1 mouse_genomes_project 5 150299373 150384119 + MGP_C57BL6NJ_P0076001 Elfn1 protein_coding protein_coding MGP_C57BL6NJ_T0076002.1 MGP_C57BL6NJ_G0030725.1 mouse_genomes_project 5 150299904 150380447 + Elfn1 protein_coding processed_transcript MGP_C57BL6NJ_T0075873.1 MGP_C57BL6NJ_G0030699.1 mouse_genomes_project 5 148613240 148623069 + Zfp157 protein_coding retained_intron MGP_C57BL6NJ_T0075874.1 MGP_C57BL6NJ_G0030699.1 mouse_genomes_project 5 148613268 148622145 + Zfp157 protein_coding retained_intron MGP_C57BL6NJ_T0075875.1 MGP_C57BL6NJ_G0030699.1 mouse_genomes_project 5 148613272 148623113 + Zfp157 protein_coding retained_intron MGP_C57BL6NJ_T0075876.1 MGP_C57BL6NJ_G0030699.1 mouse_genomes_project 5 148613280 148633659 + MGP_C57BL6NJ_P0075876 Zfp157 protein_coding protein_coding MGP_C57BL6NJ_T0075877.1 MGP_C57BL6NJ_G0030699.1 mouse_genomes_project 5 148613388 148636009 + MGP_C57BL6NJ_P0075877 Zfp157 protein_coding protein_coding MGP_C57BL6NJ_T0010917.1 MGP_C57BL6NJ_G0009002.1 mouse_genomes_project 5 28922841 28922908 - Gm23801 miRNA miRNA MGP_C57BL6NJ_T0008445.1 MGP_C57BL6NJ_G0006878.1 mouse_genomes_project 5 114975535 114976010 - Gm42517 lincRNA lincRNA MGP_C57BL6NJ_T0076206.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674748 154698637 + Pms2 protein_coding retained_intron MGP_C57BL6NJ_T0076207.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674748 154698637 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076208.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674748 154698637 + MGP_C57BL6NJ_P0076208 Pms2 protein_coding protein_coding MGP_C57BL6NJ_T0076209.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674774 154695892 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076210.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674774 154696129 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076211.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674783 154682381 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076212.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674788 154679503 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076213.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674809 154691583 + Pms2 protein_coding retained_intron MGP_C57BL6NJ_T0076214.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674809 154679040 + Pms2 protein_coding retained_intron MGP_C57BL6NJ_T0076215.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674841 154695846 + MGP_C57BL6NJ_P0076215 Pms2 protein_coding protein_coding MGP_C57BL6NJ_T0076216.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154674945 154678209 + Pms2 protein_coding processed_transcript MGP_C57BL6NJ_T0076217.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154678066 154678661 + Pms2 protein_coding retained_intron MGP_C57BL6NJ_T0076218.1 MGP_C57BL6NJ_G0030771.1 mouse_genomes_project 5 154684301 154690192 + MGP_C57BL6NJ_P0076218 Pms2 protein_coding protein_coding MGP_C57BL6NJ_T0008282.1 MGP_C57BL6NJ_G0006750.1 mouse_genomes_project 5 38229017 38233163 + Gm20052 lincRNA lincRNA MGP_C57BL6NJ_T0008283.1 MGP_C57BL6NJ_G0006750.1 mouse_genomes_project 5 38229184 38230219 + Gm20052 lincRNA lincRNA MGP_C57BL6NJ_T0008284.1 MGP_C57BL6NJ_G0006750.1 mouse_genomes_project 5 38229595 38232045 + Gm20052 lincRNA lincRNA MGP_C57BL6NJ_T0008285.1 MGP_C57BL6NJ_G0006750.1 mouse_genomes_project 5 38229941 38232522 + Gm20052 lincRNA lincRNA MGP_C57BL6NJ_T0008286.1 MGP_C57BL6NJ_G0006750.1 mouse_genomes_project 5 38229952 38232383 + Gm20052 lincRNA lincRNA MGP_C57BL6NJ_T0074126.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122557956 122585481 - MGP_C57BL6NJ_P0074126 Cabp1 protein_coding protein_coding MGP_C57BL6NJ_T0074127.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122557956 122577408 - MGP_C57BL6NJ_P0074127 Cabp1 protein_coding protein_coding MGP_C57BL6NJ_T0074128.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122557981 122572522 - Cabp1 protein_coding processed_transcript MGP_C57BL6NJ_T0074129.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122558213 122577222 - MGP_C57BL6NJ_P0074129 Cabp1 protein_coding protein_coding MGP_C57BL6NJ_T0074130.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122558238 122577158 - MGP_C57BL6NJ_P0074130 Cabp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074131.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122561877 122572359 - Cabp1 protein_coding retained_intron MGP_C57BL6NJ_T0074132.1 MGP_C57BL6NJ_G0030390.1 mouse_genomes_project 5 122570286 122575244 - Cabp1 protein_coding retained_intron MGP_C57BL6NJ_T0071660.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34657506 34683229 + MGP_C57BL6NJ_P0071660 Sh3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0071661.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34657514 34695170 + MGP_C57BL6NJ_P0071661 Sh3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0071662.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34675033 34689250 + Sh3bp2 protein_coding retained_intron MGP_C57BL6NJ_T0071663.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34675033 34684275 + MGP_C57BL6NJ_P0071663 Sh3bp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071664.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34675033 34695154 + MGP_C57BL6NJ_P0071664 Sh3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0071665.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34681244 34695154 + MGP_C57BL6NJ_P0071665 Sh3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0071666.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34681356 34695167 + MGP_C57BL6NJ_P0071666 Sh3bp2 protein_coding protein_coding MGP_C57BL6NJ_T0071667.1 MGP_C57BL6NJ_G0029897.1 mouse_genomes_project 5 34683073 34684321 + Sh3bp2 protein_coding retained_intron MGP_C57BL6NJ_T0075766.1 MGP_C57BL6NJ_G0030675.1 mouse_genomes_project 5 147847131 147881188 + MGP_C57BL6NJ_P0075766 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0075767.1 MGP_C57BL6NJ_G0030675.1 mouse_genomes_project 5 147854534 147857745 + protein_coding retained_intron MGP_C57BL6NJ_T0075768.1 MGP_C57BL6NJ_G0030675.1 mouse_genomes_project 5 147860996 147862832 + protein_coding retained_intron MGP_C57BL6NJ_T0075769.1 MGP_C57BL6NJ_G0030675.1 mouse_genomes_project 5 147861225 147873388 + protein_coding processed_transcript MGP_C57BL6NJ_T0075770.1 MGP_C57BL6NJ_G0030675.1 mouse_genomes_project 5 147872604 147880890 + MGP_C57BL6NJ_P0075770 protein_coding protein_coding MGP_C57BL6NJ_T0001736.1 MGP_C57BL6NJ_G0001631.1 mouse_genomes_project 5 55160445 55162216 + TEC TEC MGP_C57BL6NJ_T0004991.1 MGP_C57BL6NJ_G0004292.1 mouse_genomes_project 5 132944107 132945028 + Pitpnm2os2 antisense antisense MGP_C57BL6NJ_T0004992.1 MGP_C57BL6NJ_G0004292.1 mouse_genomes_project 5 132944160 132949545 + Pitpnm2os2 antisense antisense MGP_C57BL6NJ_T0004993.1 MGP_C57BL6NJ_G0004292.1 mouse_genomes_project 5 132944842 132947307 + Pitpnm2os2 antisense antisense MGP_C57BL6NJ_T0001664.1 MGP_C57BL6NJ_G0001560.1 mouse_genomes_project 5 44460686 44463214 + TEC TEC MGP_C57BL6NJ_T0075097.1 MGP_C57BL6NJ_G0030556.1 mouse_genomes_project 5 138813855 138844792 + MGP_C57BL6NJ_P0075097 Mmp17 protein_coding protein_coding MGP_C57BL6NJ_T0075098.1 MGP_C57BL6NJ_G0030556.1 mouse_genomes_project 5 138830483 138836309 + Mmp17 protein_coding retained_intron MGP_C57BL6NJ_T0001810.1 MGP_C57BL6NJ_G0001704.1 mouse_genomes_project 5 71913261 71916131 - TEC TEC MGP_C57BL6NJ_T0002008.1 MGP_C57BL6NJ_G0001900.1 mouse_genomes_project 5 141928891 141931051 - TEC TEC MGP_C57BL6NJ_T0071755.1 MGP_C57BL6NJ_G0029908.1 mouse_genomes_project 5 35456794 35460239 + MGP_C57BL6NJ_P0071755 Adra2c protein_coding protein_coding MGP_C57BL6NJ_T0015366.1 MGP_C57BL6NJ_G0013411.1 mouse_genomes_project 5 56309303 56310132 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010940.1 MGP_C57BL6NJ_G0009025.1 mouse_genomes_project 5 80619766 80619848 + Mir5098 miRNA miRNA MGP_C57BL6NJ_T0008543.1 MGP_C57BL6NJ_G0006937.1 mouse_genomes_project 5 132761131 132821558 + Gm34086 lincRNA lincRNA MGP_C57BL6NJ_T0070464.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 769598 890876 - MGP_C57BL6NJ_P0070464 Ankib1 protein_coding protein_coding MGP_C57BL6NJ_T0070465.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 773067 784592 - Ankib1 protein_coding retained_intron MGP_C57BL6NJ_T0070466.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 773478 885335 - MGP_C57BL6NJ_P0070466 Ankib1 protein_coding protein_coding MGP_C57BL6NJ_T0070467.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 774399 774828 - Ankib1 protein_coding retained_intron MGP_C57BL6NJ_T0070468.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 780149 784329 - Ankib1 protein_coding retained_intron MGP_C57BL6NJ_T0070469.1 MGP_C57BL6NJ_G0029693.1 mouse_genomes_project 5 821217 890738 - Ankib1 protein_coding retained_intron MGP_C57BL6NJ_T0015540.1 MGP_C57BL6NJ_G0013585.1 mouse_genomes_project 5 129715776 129716602 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008465.1 MGP_C57BL6NJ_G0006887.1 mouse_genomes_project 5 118586352 118587021 + Gm42489 lincRNA lincRNA MGP_C57BL6NJ_T0004856.1 MGP_C57BL6NJ_G0004196.1 mouse_genomes_project 5 53660007 53661256 + Gm43685 antisense antisense MGP_C57BL6NJ_T0072112.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49253354 49297591 + 5730480H06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0072113.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49289713 49306231 + MGP_C57BL6NJ_P0072113 5730480H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0072114.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49289713 49306231 + MGP_C57BL6NJ_P0072114 5730480H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0072115.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49289817 49306232 + MGP_C57BL6NJ_P0072115 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072116.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49291819 49313003 + MGP_C57BL6NJ_P0072116 5730480H06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072117.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49297504 49305942 + 5730480H06Rik protein_coding retained_intron MGP_C57BL6NJ_T0072125.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49310222 49315627 + 5730480H06Rik protein_coding retained_intron MGP_C57BL6NJ_T0072126.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49312962 49331574 + 5730480H06Rik protein_coding retained_intron MGP_C57BL6NJ_T0072128.1 MGP_C57BL6NJ_G0029970.1 mouse_genomes_project 5 49314049 49331603 + 5730480H06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0075005.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134109509 134186252 - MGP_C57BL6NJ_P0075005 Scarb1 protein_coding protein_coding MGP_C57BL6NJ_T0075006.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134109511 134186229 - MGP_C57BL6NJ_P0075006 Scarb1 protein_coding protein_coding MGP_C57BL6NJ_T0075007.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134109988 134130714 - MGP_C57BL6NJ_P0075007 Scarb1 protein_coding protein_coding MGP_C57BL6NJ_T0075008.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134110209 134120764 - Scarb1 protein_coding processed_transcript MGP_C57BL6NJ_T0075009.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134119554 134123282 - Scarb1 protein_coding retained_intron MGP_C57BL6NJ_T0075010.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134119959 134186177 - Scarb1 protein_coding retained_intron MGP_C57BL6NJ_T0075011.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134135161 134142385 - Scarb1 protein_coding retained_intron MGP_C57BL6NJ_T0075012.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134138202 134155919 - Scarb1 protein_coding processed_transcript MGP_C57BL6NJ_T0075013.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134141031 134185166 - MGP_C57BL6NJ_P0075013 Scarb1 protein_coding protein_coding MGP_C57BL6NJ_T0075014.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134142091 134165554 - Scarb1 protein_coding processed_transcript MGP_C57BL6NJ_T0075015.1 MGP_C57BL6NJ_G0030538.1 mouse_genomes_project 5 134164547 134167006 - Scarb1 protein_coding retained_intron MGP_C57BL6NJ_T0005047.1 MGP_C57BL6NJ_G0004332.1 mouse_genomes_project 5 155044732 155049549 - 2900089D17Rik antisense antisense MGP_C57BL6NJ_T0005048.1 MGP_C57BL6NJ_G0004332.1 mouse_genomes_project 5 155044819 155060821 - 2900089D17Rik antisense antisense MGP_C57BL6NJ_T0071979.1 MGP_C57BL6NJ_G0029949.1 mouse_genomes_project 5 42376579 42379598 - MGP_C57BL6NJ_P0071979 Nkx3-2 protein_coding protein_coding MGP_C57BL6NJ_T0015580.1 MGP_C57BL6NJ_G0013625.1 mouse_genomes_project 5 151031144 151031548 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018680.1 MGP_C57BL6NJ_G0016013.1 mouse_genomes_project 5 161483927 161491600 + Gm43451 processed_transcript lincRNA MGP_C57BL6NJ_T0018681.1 MGP_C57BL6NJ_G0016013.1 mouse_genomes_project 5 161490982 161491845 + Gm43451 processed_transcript retained_intron MGP_C57BL6NJ_T0004959.1 MGP_C57BL6NJ_G0004271.1 mouse_genomes_project 5 124745561 124749033 + 9530046B11Rik antisense antisense MGP_C57BL6NJ_T0072543.1 MGP_C57BL6NJ_G0030046.1 mouse_genomes_project 5 75579196 75602690 + MGP_C57BL6NJ_P0072543 Nipal1 protein_coding protein_coding MGP_C57BL6NJ_T0072544.1 MGP_C57BL6NJ_G0030046.1 mouse_genomes_project 5 75579214 75599172 + MGP_C57BL6NJ_P0072544 Nipal1 protein_coding protein_coding MGP_C57BL6NJ_T0072545.1 MGP_C57BL6NJ_G0030046.1 mouse_genomes_project 5 75579243 75590537 + Nipal1 protein_coding retained_intron MGP_C57BL6NJ_T0100493.1 MGP_C57BL6NJ_G0038539.1 mouse_genomes_project 5 140124533 140124637 + Gm23761 snRNA snRNA MGP_C57BL6NJ_T0015531.1 MGP_C57BL6NJ_G0013576.1 mouse_genomes_project 5 122589442 122589805 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010914.1 MGP_C57BL6NJ_G0008999.1 mouse_genomes_project 5 22389276 22389322 - Gm28022 miRNA miRNA MGP_C57BL6NJ_T0073681.1 MGP_C57BL6NJ_G0030297.1 mouse_genomes_project 5 115682475 115696891 - MGP_C57BL6NJ_P0073681 Vmn2r10 protein_coding protein_coding MGP_C57BL6NJ_T0075888.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 148997980 149057146 + MGP_C57BL6NJ_P0075888 Fam20c protein_coding protein_coding MGP_C57BL6NJ_T0075889.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 148998549 149056450 + MGP_C57BL6NJ_P0075889 Fam20c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075890.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 148998553 149002316 + Fam20c protein_coding retained_intron MGP_C57BL6NJ_T0075891.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 149033583 149056228 + Fam20c protein_coding processed_transcript MGP_C57BL6NJ_T0075892.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 149035857 149054400 + Fam20c protein_coding processed_transcript MGP_C57BL6NJ_T0075893.1 MGP_C57BL6NJ_G0030703.1 mouse_genomes_project 5 149054250 149056474 + Fam20c protein_coding retained_intron MGP_C57BL6NJ_T0072728.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80160277 80201446 - MGP_C57BL6NJ_P0072728 Aasdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072729.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80162553 80163286 - Aasdh protein_coding processed_transcript MGP_C57BL6NJ_T0072730.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80162553 80201533 - MGP_C57BL6NJ_P0072730 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072731.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80162558 80201532 - MGP_C57BL6NJ_P0072731 Aasdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072732.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80162604 80198170 - MGP_C57BL6NJ_P0072732 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072733.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80162786 80177251 - MGP_C57BL6NJ_P0072733 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072734.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80174769 80201511 - Aasdh protein_coding retained_intron MGP_C57BL6NJ_T0072735.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80177707 80201506 - MGP_C57BL6NJ_P0072735 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072736.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80177722 80179520 - Aasdh protein_coding retained_intron MGP_C57BL6NJ_T0072737.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80188603 80191061 - Aasdh protein_coding retained_intron MGP_C57BL6NJ_T0072738.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80190432 80201511 - Aasdh protein_coding processed_transcript MGP_C57BL6NJ_T0072739.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80192224 80201511 - Aasdh protein_coding retained_intron MGP_C57BL6NJ_T0072740.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80197988 80201409 - MGP_C57BL6NJ_P0072740 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072741.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80198077 80201522 - MGP_C57BL6NJ_P0072741 Aasdh protein_coding protein_coding MGP_C57BL6NJ_T0072742.1 MGP_C57BL6NJ_G0030079.1 mouse_genomes_project 5 80200348 80201447 - Aasdh protein_coding processed_transcript MGP_C57BL6NJ_T0074360.1 MGP_C57BL6NJ_G0030432.1 mouse_genomes_project 5 128471958 128487830 - MGP_C57BL6NJ_P0074360 Sdsl protein_coding protein_coding MGP_C57BL6NJ_T0074361.1 MGP_C57BL6NJ_G0030432.1 mouse_genomes_project 5 128471974 128487877 - MGP_C57BL6NJ_P0074361 Sdsl protein_coding protein_coding MGP_C57BL6NJ_T0074362.1 MGP_C57BL6NJ_G0030432.1 mouse_genomes_project 5 128475750 128482427 - MGP_C57BL6NJ_P0074362 Sdsl protein_coding protein_coding MGP_C57BL6NJ_T0004974.1 MGP_C57BL6NJ_G0004279.1 mouse_genomes_project 5 128666146 128667453 - Gm43579 antisense antisense MGP_C57BL6NJ_T0005010.1 MGP_C57BL6NJ_G0004306.1 mouse_genomes_project 5 144085697 144087738 + Gm42882 antisense antisense MGP_C57BL6NJ_T0001904.1 MGP_C57BL6NJ_G0001797.1 mouse_genomes_project 5 120279208 120279589 + TEC TEC MGP_C57BL6NJ_T0072044.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45198708 45549021 - MGP_C57BL6NJ_P0072044 Ldb2 protein_coding protein_coding MGP_C57BL6NJ_T0072045.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45198708 45549062 - MGP_C57BL6NJ_P0072045 Ldb2 protein_coding protein_coding MGP_C57BL6NJ_T0072046.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45198708 45549001 - MGP_C57BL6NJ_P0072046 Ldb2 protein_coding protein_coding MGP_C57BL6NJ_T0072047.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45198716 45548984 - MGP_C57BL6NJ_P0072047 Ldb2 protein_coding protein_coding MGP_C57BL6NJ_T0072048.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45205804 45327932 - Ldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0072049.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45255876 45265053 - Ldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0072050.1 MGP_C57BL6NJ_G0029961.1 mouse_genomes_project 5 45271572 45549034 - Ldb2 protein_coding retained_intron MGP_C57BL6NJ_T0071813.1 MGP_C57BL6NJ_G0029921.1 mouse_genomes_project 5 36730789 36734374 + MGP_C57BL6NJ_P0071813 Ccdc96 protein_coding protein_coding MGP_C57BL6NJ_T0002019.1 MGP_C57BL6NJ_G0001910.1 mouse_genomes_project 5 144720894 144723910 - TEC TEC MGP_C57BL6NJ_T0004963.1 MGP_C57BL6NJ_G0004274.1 mouse_genomes_project 5 125807909 125812260 + Gm9754 antisense antisense MGP_C57BL6NJ_T0075932.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149529326 149549592 + MGP_C57BL6NJ_P0075932 Get4 protein_coding protein_coding MGP_C57BL6NJ_T0075933.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149529372 149544143 + MGP_C57BL6NJ_P0075933 Get4 protein_coding protein_coding MGP_C57BL6NJ_T0075934.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149530499 149544236 + MGP_C57BL6NJ_P0075934 Get4 protein_coding protein_coding MGP_C57BL6NJ_T0075935.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149530513 149548874 + MGP_C57BL6NJ_P0075935 Get4 protein_coding protein_coding MGP_C57BL6NJ_T0075936.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149543868 149544440 + Get4 protein_coding retained_intron MGP_C57BL6NJ_T0075937.1 MGP_C57BL6NJ_G0030709.1 mouse_genomes_project 5 149543932 149549247 + Get4 protein_coding retained_intron MGP_C57BL6NJ_T0004930.1 MGP_C57BL6NJ_G0004250.1 mouse_genomes_project 5 117119641 117120235 - Gm43137 antisense antisense MGP_C57BL6NJ_T0075655.1 MGP_C57BL6NJ_G0030655.1 mouse_genomes_project 5 147355023 147379448 + MGP_C57BL6NJ_P0075655 Ephb4 protein_coding protein_coding MGP_C57BL6NJ_T0075656.1 MGP_C57BL6NJ_G0030655.1 mouse_genomes_project 5 147355055 147387763 + MGP_C57BL6NJ_P0075656 Ephb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075657.1 MGP_C57BL6NJ_G0030655.1 mouse_genomes_project 5 147355086 147379440 + MGP_C57BL6NJ_P0075657 Ephb4 protein_coding protein_coding MGP_C57BL6NJ_T0075658.1 MGP_C57BL6NJ_G0030655.1 mouse_genomes_project 5 147355344 147379230 + MGP_C57BL6NJ_P0075658 Ephb4 protein_coding protein_coding MGP_C57BL6NJ_T0075659.1 MGP_C57BL6NJ_G0030655.1 mouse_genomes_project 5 147355427 147379452 + MGP_C57BL6NJ_P0075659 Ephb4 protein_coding protein_coding MGP_C57BL6NJ_T0001890.1 MGP_C57BL6NJ_G0001783.1 mouse_genomes_project 5 115241308 115243414 - TEC TEC MGP_C57BL6NJ_T0074921.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133232156 133256417 + MGP_C57BL6NJ_P0074921 Kmt5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074922.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133232174 133233445 + Kmt5a protein_coding retained_intron MGP_C57BL6NJ_T0074923.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133232195 133254323 + MGP_C57BL6NJ_P0074923 Kmt5a protein_coding protein_coding MGP_C57BL6NJ_T0074924.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133237695 133256449 + Kmt5a protein_coding processed_transcript MGP_C57BL6NJ_T0074925.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133239212 133244732 + Kmt5a protein_coding retained_intron MGP_C57BL6NJ_T0074926.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133240132 133250551 + Kmt5a protein_coding processed_transcript MGP_C57BL6NJ_T0074927.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133240390 133254064 + Kmt5a protein_coding processed_transcript MGP_C57BL6NJ_T0074928.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133240433 133244213 + Kmt5a protein_coding processed_transcript MGP_C57BL6NJ_T0074929.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133243599 133253225 + Kmt5a protein_coding processed_transcript MGP_C57BL6NJ_T0074930.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133243812 133253376 + Kmt5a protein_coding retained_intron MGP_C57BL6NJ_T0074931.1 MGP_C57BL6NJ_G0030524.1 mouse_genomes_project 5 133244599 133254270 + Kmt5a protein_coding retained_intron MGP_C57BL6NJ_T0004903.1 MGP_C57BL6NJ_G0004234.1 mouse_genomes_project 5 105340687 105348589 + Gm16226 antisense antisense MGP_C57BL6NJ_T0004904.1 MGP_C57BL6NJ_G0004234.1 mouse_genomes_project 5 105340687 105375143 + Gm16226 antisense antisense MGP_C57BL6NJ_T0004905.1 MGP_C57BL6NJ_G0004234.1 mouse_genomes_project 5 105340692 105375145 + Gm16226 antisense antisense MGP_C57BL6NJ_T0004906.1 MGP_C57BL6NJ_G0004234.1 mouse_genomes_project 5 105340716 105375141 + Gm16226 antisense antisense MGP_C57BL6NJ_T0071215.1 MGP_C57BL6NJ_G0029830.1 mouse_genomes_project 5 30649982 30657858 + MGP_C57BL6NJ_P0071215 Emilin1 protein_coding protein_coding MGP_C57BL6NJ_T0071216.1 MGP_C57BL6NJ_G0029830.1 mouse_genomes_project 5 30650319 30657446 + Emilin1 protein_coding retained_intron MGP_C57BL6NJ_T0071217.1 MGP_C57BL6NJ_G0029830.1 mouse_genomes_project 5 30656501 30657630 + Emilin1 protein_coding retained_intron MGP_C57BL6NJ_T0015581.1 MGP_C57BL6NJ_G0013626.1 mouse_genomes_project 5 152907352 152908316 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005042.1 MGP_C57BL6NJ_G0004329.1 mouse_genomes_project 5 154082430 154085888 + 0610040B10Rik antisense antisense MGP_C57BL6NJ_T0005043.1 MGP_C57BL6NJ_G0004329.1 mouse_genomes_project 5 154082491 154084134 + 0610040B10Rik antisense antisense MGP_C57BL6NJ_T0005044.1 MGP_C57BL6NJ_G0004329.1 mouse_genomes_project 5 154082510 154085885 + 0610040B10Rik antisense antisense MGP_C57BL6NJ_T0070794.1 MGP_C57BL6NJ_G0029751.1 mouse_genomes_project 5 20635925 20677824 - MGP_C57BL6NJ_P0070794 Napepld protein_coding protein_coding MGP_C57BL6NJ_T0070795.1 MGP_C57BL6NJ_G0029751.1 mouse_genomes_project 5 20635927 20677826 - MGP_C57BL6NJ_P0070795 Napepld protein_coding protein_coding MGP_C57BL6NJ_T0072891.1 MGP_C57BL6NJ_G0030119.1 mouse_genomes_project 5 92149723 92168210 - MGP_C57BL6NJ_P0072891 Sult1e1 protein_coding protein_coding MGP_C57BL6NJ_T0001742.1 MGP_C57BL6NJ_G0001637.1 mouse_genomes_project 5 59304531 59307102 + TEC TEC MGP_C57BL6NJ_T0015298.1 MGP_C57BL6NJ_G0013343.1 mouse_genomes_project 5 25066100 25066461 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072853.1 MGP_C57BL6NJ_G0030101.1 mouse_genomes_project 5 90943430 90974796 - MGP_C57BL6NJ_P0072853 Tmprss11g protein_coding protein_coding MGP_C57BL6NJ_T0072854.1 MGP_C57BL6NJ_G0030101.1 mouse_genomes_project 5 90943921 90974767 - MGP_C57BL6NJ_P0072854 Tmprss11g protein_coding protein_coding MGP_C57BL6NJ_T0072855.1 MGP_C57BL6NJ_G0030101.1 mouse_genomes_project 5 90945909 90948194 - Tmprss11g protein_coding retained_intron MGP_C57BL6NJ_T0001750.1 MGP_C57BL6NJ_G0001645.1 mouse_genomes_project 5 59582073 59583268 + TEC TEC MGP_C57BL6NJ_T0004790.1 MGP_C57BL6NJ_G0004144.1 mouse_genomes_project 5 696549 697283 - Gm43825 antisense antisense MGP_C57BL6NJ_T0075440.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145421431 145436047 + MGP_C57BL6NJ_P0075440 Rhbdd2 protein_coding protein_coding MGP_C57BL6NJ_T0075441.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145421467 145436119 + MGP_C57BL6NJ_P0075441 Rhbdd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075442.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145421517 145426446 + Rhbdd2 protein_coding processed_transcript MGP_C57BL6NJ_T0075443.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145421529 145424429 + Rhbdd2 protein_coding retained_intron MGP_C57BL6NJ_T0075444.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145421536 145425359 + Rhbdd2 protein_coding retained_intron MGP_C57BL6NJ_T0075445.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145423915 145429137 + MGP_C57BL6NJ_P0075445 Rhbdd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075446.1 MGP_C57BL6NJ_G0030617.1 mouse_genomes_project 5 145425345 145434198 + Rhbdd2 protein_coding retained_intron MGP_C57BL6NJ_T0002013.1 MGP_C57BL6NJ_G0001905.1 mouse_genomes_project 5 143773756 143775120 + TEC TEC MGP_C57BL6NJ_T0002014.1 MGP_C57BL6NJ_G0001905.1 mouse_genomes_project 5 143773768 143774367 + TEC TEC MGP_C57BL6NJ_T0074989.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816365 133929416 - MGP_C57BL6NJ_P0074989 Ncor2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074990.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816369 133987231 - MGP_C57BL6NJ_P0074990 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074991.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816369 133987231 - MGP_C57BL6NJ_P0074991 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074992.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816369 133842007 - MGP_C57BL6NJ_P0074992 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074993.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816371 133987231 - MGP_C57BL6NJ_P0074993 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074994.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133816378 133987158 - MGP_C57BL6NJ_P0074994 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074995.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133817051 133987231 - MGP_C57BL6NJ_P0074995 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074996.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133817051 133928237 - MGP_C57BL6NJ_P0074996 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074997.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133817109 133824717 - MGP_C57BL6NJ_P0074997 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0074998.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133817351 133824256 - MGP_C57BL6NJ_P0074998 Ncor2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074999.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133817449 133822415 - Ncor2 protein_coding retained_intron MGP_C57BL6NJ_T0075000.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133824290 133826119 - MGP_C57BL6NJ_P0075000 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0075001.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133824296 133825282 - Ncor2 protein_coding retained_intron MGP_C57BL6NJ_T0075002.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133829994 133858955 - MGP_C57BL6NJ_P0075002 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0075003.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133848356 133856543 - Ncor2 protein_coding retained_intron MGP_C57BL6NJ_T0075004.1 MGP_C57BL6NJ_G0030537.1 mouse_genomes_project 5 133851494 133858966 - MGP_C57BL6NJ_P0075004 Ncor2 protein_coding protein_coding MGP_C57BL6NJ_T0008326.1 MGP_C57BL6NJ_G0006786.1 mouse_genomes_project 5 66615034 66618773 + Gm43837 lincRNA lincRNA MGP_C57BL6NJ_T0073028.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95347654 95387308 - MGP_C57BL6NJ_P0073028 Rassf6 protein_coding protein_coding MGP_C57BL6NJ_T0073029.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95347654 95387308 - MGP_C57BL6NJ_P0073029 Rassf6 protein_coding protein_coding MGP_C57BL6NJ_T0073030.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95348201 95354375 - MGP_C57BL6NJ_P0073030 Rassf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073031.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95348409 95387478 - MGP_C57BL6NJ_P0073031 Rassf6 protein_coding protein_coding MGP_C57BL6NJ_T0073032.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95363472 95387449 - MGP_C57BL6NJ_P0073032 Rassf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073033.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95368009 95387348 - MGP_C57BL6NJ_P0073033 Rassf6 protein_coding protein_coding MGP_C57BL6NJ_T0073034.1 MGP_C57BL6NJ_G0030155.1 mouse_genomes_project 5 95385292 95387476 - Rassf6 protein_coding processed_transcript MGP_C57BL6NJ_T0008491.1 MGP_C57BL6NJ_G0006903.1 mouse_genomes_project 5 122714755 122732531 + Gm13830 lincRNA lincRNA MGP_C57BL6NJ_T0008492.1 MGP_C57BL6NJ_G0006903.1 mouse_genomes_project 5 122714771 122715926 + Gm13830 lincRNA lincRNA MGP_C57BL6NJ_T0008493.1 MGP_C57BL6NJ_G0006903.1 mouse_genomes_project 5 122714772 122730920 + Gm13830 lincRNA lincRNA MGP_C57BL6NJ_T0008494.1 MGP_C57BL6NJ_G0006903.1 mouse_genomes_project 5 122714782 122715959 + Gm13830 lincRNA lincRNA MGP_C57BL6NJ_T0008495.1 MGP_C57BL6NJ_G0006903.1 mouse_genomes_project 5 122714842 122715372 + Gm13830 lincRNA lincRNA MGP_C57BL6NJ_T0015516.1 MGP_C57BL6NJ_G0013561.1 mouse_genomes_project 5 116570133 116570496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001586.1 MGP_C57BL6NJ_G0001485.1 mouse_genomes_project 5 11874355 11877115 + TEC TEC MGP_C57BL6NJ_T0076412.1 MGP_C57BL6NJ_G0030822.1 mouse_genomes_project 5 158420827 158425531 + MGP_C57BL6NJ_P0076412 Gsx1 protein_coding protein_coding MGP_C57BL6NJ_T0074870.1 MGP_C57BL6NJ_G0030518.1 mouse_genomes_project 5 132862293 132863247 + MGP_C57BL6NJ_P0074870 Arl6ip4 protein_coding protein_coding MGP_C57BL6NJ_T0074871.1 MGP_C57BL6NJ_G0030518.1 mouse_genomes_project 5 132862303 132864401 + MGP_C57BL6NJ_P0074871 Arl6ip4 protein_coding protein_coding MGP_C57BL6NJ_T0074872.1 MGP_C57BL6NJ_G0030518.1 mouse_genomes_project 5 132862326 132864301 + MGP_C57BL6NJ_P0074872 Arl6ip4 protein_coding protein_coding MGP_C57BL6NJ_T0074873.1 MGP_C57BL6NJ_G0030518.1 mouse_genomes_project 5 132862883 132864239 + MGP_C57BL6NJ_P0074873 Arl6ip4 protein_coding protein_coding MGP_C57BL6NJ_T0074874.1 MGP_C57BL6NJ_G0030518.1 mouse_genomes_project 5 132863515 132864396 + MGP_C57BL6NJ_P0074874 Arl6ip4 protein_coding protein_coding MGP_C57BL6NJ_T0074898.1 MGP_C57BL6NJ_G0030522.1 mouse_genomes_project 5 133112810 133130034 - MGP_C57BL6NJ_P0074898 Gm12184 protein_coding protein_coding MGP_C57BL6NJ_T0074899.1 MGP_C57BL6NJ_G0030522.1 mouse_genomes_project 5 133112998 133122052 - MGP_C57BL6NJ_P0074899 Gm12184 protein_coding protein_coding MGP_C57BL6NJ_T0074900.1 MGP_C57BL6NJ_G0030522.1 mouse_genomes_project 5 133113137 133120672 - MGP_C57BL6NJ_P0074900 Gm12184 protein_coding protein_coding MGP_C57BL6NJ_T0074901.1 MGP_C57BL6NJ_G0030522.1 mouse_genomes_project 5 133113156 133122631 - MGP_C57BL6NJ_P0074901 Gm12184 protein_coding protein_coding MGP_C57BL6NJ_T0074902.1 MGP_C57BL6NJ_G0030522.1 mouse_genomes_project 5 133113432 133139109 - MGP_C57BL6NJ_P0074902 Gm12184 protein_coding protein_coding MGP_C57BL6NJ_T0072844.1 MGP_C57BL6NJ_G0030097.1 mouse_genomes_project 5 90603400 90622194 - MGP_C57BL6NJ_P0072844 Gnrhr protein_coding protein_coding MGP_C57BL6NJ_T0072845.1 MGP_C57BL6NJ_G0030097.1 mouse_genomes_project 5 90604640 90622163 - MGP_C57BL6NJ_P0072845 Gnrhr protein_coding protein_coding MGP_C57BL6NJ_T0072846.1 MGP_C57BL6NJ_G0030097.1 mouse_genomes_project 5 90607202 90622139 - MGP_C57BL6NJ_P0072846 Gnrhr protein_coding protein_coding MGP_C57BL6NJ_T0008574.1 MGP_C57BL6NJ_G0006957.1 mouse_genomes_project 5 137611680 137613177 - 4930573I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008575.1 MGP_C57BL6NJ_G0006957.1 mouse_genomes_project 5 137611682 137613200 - 4930573I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0075066.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138145420 138169420 - MGP_C57BL6NJ_P0075066 Stx2 protein_coding protein_coding MGP_C57BL6NJ_T0075067.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138145426 138169381 - MGP_C57BL6NJ_P0075067 Stx2 protein_coding protein_coding MGP_C57BL6NJ_T0075068.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138147018 138150022 - Stx2 protein_coding retained_intron MGP_C57BL6NJ_T0075069.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138149528 138150713 - Stx2 protein_coding retained_intron MGP_C57BL6NJ_T0075070.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138149771 138169269 - Stx2 protein_coding processed_transcript MGP_C57BL6NJ_T0075071.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138151504 138169395 - Stx2 protein_coding retained_intron MGP_C57BL6NJ_T0075072.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138154358 138169290 - MGP_C57BL6NJ_P0075072 Stx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0075073.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138154372 138160494 - MGP_C57BL6NJ_P0075073 Stx2 protein_coding protein_coding MGP_C57BL6NJ_T0075074.1 MGP_C57BL6NJ_G0030552.1 mouse_genomes_project 5 138159946 138169392 - Stx2 protein_coding retained_intron MGP_C57BL6NJ_T0015342.1 MGP_C57BL6NJ_G0013387.1 mouse_genomes_project 5 41932442 41933251 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008290.1 MGP_C57BL6NJ_G0006754.1 mouse_genomes_project 5 39721785 39727927 + Gm43454 lincRNA lincRNA MGP_C57BL6NJ_T0075783.1 MGP_C57BL6NJ_G0030680.1 mouse_genomes_project 5 148059095 148070192 - MGP_C57BL6NJ_P0075783 Gjc3 protein_coding protein_coding MGP_C57BL6NJ_T0075784.1 MGP_C57BL6NJ_G0030680.1 mouse_genomes_project 5 148069605 148070189 - Gjc3 protein_coding retained_intron MGP_C57BL6NJ_T0103215.1 MGP_C57BL6NJ_G0041009.1 mouse_genomes_project 5 134731132 134731797 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0072443.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69858518 69913924 + MGP_C57BL6NJ_P0072443 Slc30a9 protein_coding protein_coding MGP_C57BL6NJ_T0072444.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69858518 69913921 + MGP_C57BL6NJ_P0072444 Slc30a9 protein_coding protein_coding MGP_C57BL6NJ_T0072445.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69858527 69861318 + Slc30a9 protein_coding retained_intron MGP_C57BL6NJ_T0072446.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69858528 69911267 + MGP_C57BL6NJ_P0072446 Slc30a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072447.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69858747 69870479 + Slc30a9 protein_coding processed_transcript MGP_C57BL6NJ_T0072448.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69867263 69897676 + MGP_C57BL6NJ_P0072448 Slc30a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072449.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69867289 69880060 + MGP_C57BL6NJ_P0072449 Slc30a9 protein_coding protein_coding MGP_C57BL6NJ_T0072450.1 MGP_C57BL6NJ_G0030025.1 mouse_genomes_project 5 69883650 69908836 + Slc30a9 protein_coding retained_intron MGP_C57BL6NJ_T0076310.1 MGP_C57BL6NJ_G0030790.1 mouse_genomes_project 5 156068470 156088223 - MGP_C57BL6NJ_P0076310 Ptcd1 protein_coding protein_coding MGP_C57BL6NJ_T0076311.1 MGP_C57BL6NJ_G0030790.1 mouse_genomes_project 5 156086562 156088071 - MGP_C57BL6NJ_P0076311 Ptcd1 protein_coding protein_coding MGP_C57BL6NJ_T0015299.1 MGP_C57BL6NJ_G0013344.1 mouse_genomes_project 5 25728446 25730259 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072451.1 MGP_C57BL6NJ_G0030026.1 mouse_genomes_project 5 69939923 69977297 - MGP_C57BL6NJ_P0072451 Bend4 protein_coding protein_coding MGP_C57BL6NJ_T0072452.1 MGP_C57BL6NJ_G0030026.1 mouse_genomes_project 5 69939924 69977115 - MGP_C57BL6NJ_P0072452 Bend4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072453.1 MGP_C57BL6NJ_G0030026.1 mouse_genomes_project 5 69939924 69977115 - MGP_C57BL6NJ_P0072453 Bend4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072454.1 MGP_C57BL6NJ_G0030026.1 mouse_genomes_project 5 69939924 69976828 - MGP_C57BL6NJ_P0072454 Bend4 protein_coding protein_coding MGP_C57BL6NJ_T0072455.1 MGP_C57BL6NJ_G0030026.1 mouse_genomes_project 5 69939924 69977808 - MGP_C57BL6NJ_P0072455 Bend4 protein_coding protein_coding MGP_C57BL6NJ_T0001994.1 MGP_C57BL6NJ_G0001886.1 mouse_genomes_project 5 141300433 141303394 - TEC TEC MGP_C57BL6NJ_T0010908.1 MGP_C57BL6NJ_G0008993.1 mouse_genomes_project 5 2092193 2092303 - Gm25037 miRNA miRNA MGP_C57BL6NJ_T0015305.1 MGP_C57BL6NJ_G0013350.1 mouse_genomes_project 5 27271619 27272601 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0075581.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146932014 146947001 + MGP_C57BL6NJ_P0075581 Fis1 protein_coding protein_coding MGP_C57BL6NJ_T0075582.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146932145 146946918 + MGP_C57BL6NJ_P0075582 Fis1 protein_coding protein_coding MGP_C57BL6NJ_T0075583.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146942845 146947003 + MGP_C57BL6NJ_P0075583 Fis1 protein_coding protein_coding MGP_C57BL6NJ_T0075584.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146943201 146946726 + Fis1 protein_coding processed_transcript MGP_C57BL6NJ_T0075585.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146943212 146946879 + Fis1 protein_coding processed_transcript MGP_C57BL6NJ_T0075586.1 MGP_C57BL6NJ_G0030640.1 mouse_genomes_project 5 146943613 146946780 + Fis1 protein_coding processed_transcript MGP_C57BL6NJ_T0008620.1 MGP_C57BL6NJ_G0006990.1 mouse_genomes_project 5 157743826 157757276 - Gm34333 lincRNA lincRNA MGP_C57BL6NJ_T0072266.1 MGP_C57BL6NJ_G0029999.1 mouse_genomes_project 5 67215260 67215880 - protein_coding processed_transcript MGP_C57BL6NJ_T0008216.1 MGP_C57BL6NJ_G0006709.1 mouse_genomes_project 5 6548934 6550202 - Gm15611 lincRNA lincRNA MGP_C57BL6NJ_T0001996.1 MGP_C57BL6NJ_G0001888.1 mouse_genomes_project 5 141354114 141356398 - TEC TEC MGP_C57BL6NJ_T0072068.1 MGP_C57BL6NJ_G0029966.1 mouse_genomes_project 5 46327510 46335639 - Fam184b protein_coding retained_intron MGP_C57BL6NJ_T0072069.1 MGP_C57BL6NJ_G0029966.1 mouse_genomes_project 5 46327510 46443246 - MGP_C57BL6NJ_P0072069 Fam184b protein_coding protein_coding MGP_C57BL6NJ_T0072070.1 MGP_C57BL6NJ_G0029966.1 mouse_genomes_project 5 46327529 46442908 - MGP_C57BL6NJ_P0072070 Fam184b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004826.1 MGP_C57BL6NJ_G0004174.1 mouse_genomes_project 5 34327643 34332466 + Gm42848 antisense antisense MGP_C57BL6NJ_T0001970.1 MGP_C57BL6NJ_G0001862.1 mouse_genomes_project 5 136632779 136633553 + TEC TEC MGP_C57BL6NJ_T0002021.1 MGP_C57BL6NJ_G0001912.1 mouse_genomes_project 5 145228314 145229955 - TEC TEC MGP_C57BL6NJ_T0001701.1 MGP_C57BL6NJ_G0001597.1 mouse_genomes_project 5 49849260 49853072 - TEC TEC MGP_C57BL6NJ_T0001702.1 MGP_C57BL6NJ_G0001597.1 mouse_genomes_project 5 49852192 49852566 - TEC pseudogene MGP_C57BL6NJ_T0001628.1 MGP_C57BL6NJ_G0001525.1 mouse_genomes_project 5 31296958 31298067 - TEC TEC MGP_C57BL6NJ_T0072753.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80275993 80305836 + MGP_C57BL6NJ_P0072753 Srp72 protein_coding protein_coding MGP_C57BL6NJ_T0072754.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80276017 80304715 + MGP_C57BL6NJ_P0072754 Srp72 protein_coding protein_coding MGP_C57BL6NJ_T0072755.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80276031 80281855 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072756.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80281843 80283979 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072757.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80285359 80301045 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072758.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80299891 80300802 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072759.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80301155 80303388 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072760.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80302872 80305836 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0072761.1 MGP_C57BL6NJ_G0030082.1 mouse_genomes_project 5 80303303 80304240 + Srp72 protein_coding retained_intron MGP_C57BL6NJ_T0008501.1 MGP_C57BL6NJ_G0006908.1 mouse_genomes_project 5 123531543 123534783 - Gm13842 lincRNA lincRNA MGP_C57BL6NJ_T0008502.1 MGP_C57BL6NJ_G0006908.1 mouse_genomes_project 5 123531978 123535177 - Gm13842 lincRNA lincRNA MGP_C57BL6NJ_T0005036.1 MGP_C57BL6NJ_G0004324.1 mouse_genomes_project 5 150491917 150504006 + Gm16122 antisense antisense MGP_C57BL6NJ_T0070459.1 MGP_C57BL6NJ_G0029692.1 mouse_genomes_project 5 730964 753284 + MGP_C57BL6NJ_P0070459 Tmbim7 protein_coding protein_coding MGP_C57BL6NJ_T0070460.1 MGP_C57BL6NJ_G0029692.1 mouse_genomes_project 5 736285 759069 + MGP_C57BL6NJ_P0070460 Tmbim7 protein_coding protein_coding MGP_C57BL6NJ_T0070461.1 MGP_C57BL6NJ_G0029692.1 mouse_genomes_project 5 736460 746316 + Tmbim7 protein_coding retained_intron MGP_C57BL6NJ_T0070462.1 MGP_C57BL6NJ_G0029692.1 mouse_genomes_project 5 736461 759197 + MGP_C57BL6NJ_P0070462 Tmbim7 protein_coding protein_coding MGP_C57BL6NJ_T0070463.1 MGP_C57BL6NJ_G0029692.1 mouse_genomes_project 5 740969 759978 + MGP_C57BL6NJ_P0070463 Tmbim7 protein_coding protein_coding MGP_C57BL6NJ_T0001648.1 MGP_C57BL6NJ_G0001544.1 mouse_genomes_project 5 35747729 35750434 - TEC TEC MGP_C57BL6NJ_T0001831.1 MGP_C57BL6NJ_G0001724.1 mouse_genomes_project 5 77357953 77358422 - TEC TEC MGP_C57BL6NJ_T0015322.1 MGP_C57BL6NJ_G0013367.1 mouse_genomes_project 5 32840612 32840898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005023.1 MGP_C57BL6NJ_G0004316.1 mouse_genomes_project 5 146147051 146299812 + Gm16599 antisense antisense MGP_C57BL6NJ_T0072861.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91259768 91310921 + MGP_C57BL6NJ_P0072861 Ythdc1 protein_coding protein_coding MGP_C57BL6NJ_T0072862.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91259780 91310926 + MGP_C57BL6NJ_P0072862 Ythdc1 protein_coding protein_coding MGP_C57BL6NJ_T0072863.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91260043 91310926 + MGP_C57BL6NJ_P0072863 Ythdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072864.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91260111 91310924 + MGP_C57BL6NJ_P0072864 Ythdc1 protein_coding protein_coding MGP_C57BL6NJ_T0072865.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91261956 91274032 + Ythdc1 protein_coding retained_intron MGP_C57BL6NJ_T0072866.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91287178 91310926 + Ythdc1 protein_coding retained_intron MGP_C57BL6NJ_T0072867.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91294708 91299857 + Ythdc1 protein_coding retained_intron MGP_C57BL6NJ_T0072868.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91300841 91307841 + Ythdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0072869.1 MGP_C57BL6NJ_G0030105.1 mouse_genomes_project 5 91303286 91310924 + Ythdc1 protein_coding retained_intron MGP_C57BL6NJ_T0075788.1 MGP_C57BL6NJ_G0030682.1 mouse_genomes_project 5 148229877 148252586 + MGP_C57BL6NJ_P0075788 Zkscan1 protein_coding protein_coding MGP_C57BL6NJ_T0075789.1 MGP_C57BL6NJ_G0030682.1 mouse_genomes_project 5 148229877 148252586 + MGP_C57BL6NJ_P0075789 Zkscan1 protein_coding protein_coding MGP_C57BL6NJ_T0075790.1 MGP_C57BL6NJ_G0030682.1 mouse_genomes_project 5 148229913 148249256 + MGP_C57BL6NJ_P0075790 Zkscan1 protein_coding protein_coding MGP_C57BL6NJ_T0075791.1 MGP_C57BL6NJ_G0030682.1 mouse_genomes_project 5 148237412 148249255 + MGP_C57BL6NJ_P0075791 Zkscan1 protein_coding protein_coding MGP_C57BL6NJ_T0001943.1 MGP_C57BL6NJ_G0001836.1 mouse_genomes_project 5 130203124 130206315 - TEC TEC MGP_C57BL6NJ_T0072957.1 MGP_C57BL6NJ_G0030138.1 mouse_genomes_project 5 93157652 93164469 - Jchain protein_coding retained_intron MGP_C57BL6NJ_T0072958.1 MGP_C57BL6NJ_G0030138.1 mouse_genomes_project 5 93158355 93167143 - MGP_C57BL6NJ_P0072958 Jchain protein_coding protein_coding MGP_C57BL6NJ_T0004973.1 MGP_C57BL6NJ_G0004278.1 mouse_genomes_project 5 128496377 128497439 - Gm15690 antisense antisense MGP_C57BL6NJ_T0008612.1 MGP_C57BL6NJ_G0006984.1 mouse_genomes_project 5 154157923 154161692 - Gm42504 lincRNA lincRNA MGP_C57BL6NJ_T0001869.1 MGP_C57BL6NJ_G0001762.1 mouse_genomes_project 5 107627792 107630386 + TEC TEC MGP_C57BL6NJ_T0100434.1 MGP_C57BL6NJ_G0038480.1 mouse_genomes_project 5 32926302 32926402 + Gm24003 snRNA snRNA MGP_C57BL6NJ_T0001724.1 MGP_C57BL6NJ_G0001619.1 mouse_genomes_project 5 52567681 52569612 + TEC TEC MGP_C57BL6NJ_T0071953.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38889213 38924164 - MGP_C57BL6NJ_P0071953 Wdr1 protein_coding protein_coding MGP_C57BL6NJ_T0071954.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38889980 38892527 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071955.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38890121 38892415 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071956.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38891595 38892251 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071957.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38892368 38894397 - Wdr1 protein_coding processed_transcript MGP_C57BL6NJ_T0071958.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38899518 38923889 - MGP_C57BL6NJ_P0071958 Wdr1 protein_coding protein_coding MGP_C57BL6NJ_T0071959.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38902574 38923908 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071960.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38908063 38925634 - Wdr1 protein_coding processed_transcript MGP_C57BL6NJ_T0071961.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38913610 38924164 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071962.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38920023 38923901 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0071963.1 MGP_C57BL6NJ_G0029944.1 mouse_genomes_project 5 38923297 38923933 - Wdr1 protein_coding retained_intron MGP_C57BL6NJ_T0015287.1 MGP_C57BL6NJ_G0013332.1 mouse_genomes_project 5 23188590 23191408 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071759.1 MGP_C57BL6NJ_G0029911.1 mouse_genomes_project 5 35756363 35774706 - MGP_C57BL6NJ_P0071759 Trmt44 protein_coding protein_coding MGP_C57BL6NJ_T0071760.1 MGP_C57BL6NJ_G0029911.1 mouse_genomes_project 5 35772131 35774687 - Trmt44 protein_coding retained_intron MGP_C57BL6NJ_T0071761.1 MGP_C57BL6NJ_G0029911.1 mouse_genomes_project 5 35772383 35774310 - MGP_C57BL6NJ_P0071761 Trmt44 protein_coding protein_coding MGP_C57BL6NJ_T0015465.1 MGP_C57BL6NJ_G0013510.1 mouse_genomes_project 5 98160061 98160443 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074200.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017934 123079632 + MGP_C57BL6NJ_P0074200 Gcn1l1 protein_coding protein_coding MGP_C57BL6NJ_T0074201.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017952 123036954 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0074202.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017954 123033996 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0074203.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017956 123037463 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0074204.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017969 123079632 + MGP_C57BL6NJ_P0074204 Gcn1l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074205.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123017983 123019901 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0074206.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123035112 123040134 + Gcn1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0074207.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123061918 123079626 + Gcn1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0074208.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123066056 123066821 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0074209.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123068078 123069637 + Gcn1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0074210.1 MGP_C57BL6NJ_G0030404.1 mouse_genomes_project 5 123071119 123072267 + Gcn1l1 protein_coding retained_intron MGP_C57BL6NJ_T0075157.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139249935 139265220 - MGP_C57BL6NJ_P0075157 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075158.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139250171 139253400 - MGP_C57BL6NJ_P0075158 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075159.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139250172 139270042 - MGP_C57BL6NJ_P0075159 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075160.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139250181 139265865 - MGP_C57BL6NJ_P0075160 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075161.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139252124 139265139 - MGP_C57BL6NJ_P0075161 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075162.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139255431 139265212 - Asl protein_coding processed_transcript MGP_C57BL6NJ_T0075163.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139260559 139265156 - MGP_C57BL6NJ_P0075163 Asl protein_coding protein_coding MGP_C57BL6NJ_T0075164.1 MGP_C57BL6NJ_G0030569.1 mouse_genomes_project 5 139263136 139265184 - Asl protein_coding retained_intron MGP_C57BL6NJ_T0015381.1 MGP_C57BL6NJ_G0013426.1 mouse_genomes_project 5 61904885 61905319 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001971.1 MGP_C57BL6NJ_G0001863.1 mouse_genomes_project 5 137324727 137326697 - TEC TEC MGP_C57BL6NJ_T0004848.1 MGP_C57BL6NJ_G0004191.1 mouse_genomes_project 5 45378383 45398388 + Gm43507 antisense antisense MGP_C57BL6NJ_T0004849.1 MGP_C57BL6NJ_G0004191.1 mouse_genomes_project 5 45389390 45399799 + Gm43507 antisense antisense MGP_C57BL6NJ_T0001642.1 MGP_C57BL6NJ_G0001538.1 mouse_genomes_project 5 33805114 33809786 - TEC TEC MGP_C57BL6NJ_T0001941.1 MGP_C57BL6NJ_G0001834.1 mouse_genomes_project 5 130043629 130046724 + TEC TEC MGP_C57BL6NJ_T0015369.1 MGP_C57BL6NJ_G0013414.1 mouse_genomes_project 5 57001798 57003200 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008350.1 MGP_C57BL6NJ_G0006803.1 mouse_genomes_project 5 77879452 77884009 + Gm42575 lincRNA lincRNA MGP_C57BL6NJ_T0015596.1 MGP_C57BL6NJ_G0013641.1 mouse_genomes_project 5 156764457 156764740 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099109.1 MGP_C57BL6NJ_G0037173.1 mouse_genomes_project 5 633919 634039 + n-R5s169 rRNA rRNA MGP_C57BL6NJ_T0001759.1 MGP_C57BL6NJ_G0001654.1 mouse_genomes_project 5 64761788 64765097 - TEC TEC MGP_C57BL6NJ_T0071101.1 MGP_C57BL6NJ_G0029810.1 mouse_genomes_project 5 29687146 29698776 + MGP_C57BL6NJ_P0071101 Il6 protein_coding protein_coding MGP_C57BL6NJ_T0071102.1 MGP_C57BL6NJ_G0029810.1 mouse_genomes_project 5 29687194 29696672 + MGP_C57BL6NJ_P0071102 Il6 protein_coding protein_coding MGP_C57BL6NJ_T0072930.1 MGP_C57BL6NJ_G0030124.1 mouse_genomes_project 5 92443333 92464627 + MGP_C57BL6NJ_P0072930 Prr27 protein_coding protein_coding MGP_C57BL6NJ_T0072931.1 MGP_C57BL6NJ_G0030124.1 mouse_genomes_project 5 92443333 92464627 + MGP_C57BL6NJ_P0072931 Prr27 protein_coding protein_coding MGP_C57BL6NJ_T0075738.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147688553 147730042 - MGP_C57BL6NJ_P0075738 Agfg2 protein_coding protein_coding MGP_C57BL6NJ_T0075739.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147688559 147729996 - MGP_C57BL6NJ_P0075739 Agfg2 protein_coding protein_coding MGP_C57BL6NJ_T0075740.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147688840 147699707 - Agfg2 protein_coding retained_intron MGP_C57BL6NJ_T0075741.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147691856 147730042 - MGP_C57BL6NJ_P0075741 Agfg2 protein_coding protein_coding MGP_C57BL6NJ_T0075742.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147693626 147702261 - MGP_C57BL6NJ_P0075742 Agfg2 protein_coding protein_coding MGP_C57BL6NJ_T0075743.1 MGP_C57BL6NJ_G0030670.1 mouse_genomes_project 5 147700754 147730009 - Agfg2 protein_coding retained_intron MGP_C57BL6NJ_T0008340.1 MGP_C57BL6NJ_G0006796.1 mouse_genomes_project 5 75575811 75577954 + 4933408A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0099466.1 MGP_C57BL6NJ_G0037523.1 mouse_genomes_project 5 44561410 44562685 + Gm16014 sense_intronic sense_intronic MGP_C57BL6NJ_T0103195.1 MGP_C57BL6NJ_G0040989.1 mouse_genomes_project 5 81078007 81079278 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011854.1 MGP_C57BL6NJ_G0009939.1 mouse_genomes_project 5 29314013 29314342 + Gm26346 misc_RNA misc_RNA MGP_C57BL6NJ_T0074278.1 MGP_C57BL6NJ_G0030415.1 mouse_genomes_project 5 124937361 124943640 - MGP_C57BL6NJ_P0074278 Pebp1 protein_coding protein_coding MGP_C57BL6NJ_T0074279.1 MGP_C57BL6NJ_G0030415.1 mouse_genomes_project 5 124939191 124943680 - MGP_C57BL6NJ_P0074279 Pebp1 protein_coding protein_coding MGP_C57BL6NJ_T0074280.1 MGP_C57BL6NJ_G0030415.1 mouse_genomes_project 5 124939335 124943665 - MGP_C57BL6NJ_P0074280 Pebp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074281.1 MGP_C57BL6NJ_G0030415.1 mouse_genomes_project 5 124941875 124943622 - Pebp1 protein_coding retained_intron MGP_C57BL6NJ_T0001668.1 MGP_C57BL6NJ_G0001564.1 mouse_genomes_project 5 44810867 44812558 + TEC TEC MGP_C57BL6NJ_T0004847.1 MGP_C57BL6NJ_G0004190.1 mouse_genomes_project 5 44929524 44947540 + Gm42984 antisense antisense MGP_C57BL6NJ_T0073801.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117714033 117741512 - MGP_C57BL6NJ_P0073801 Ulk1 protein_coding protein_coding MGP_C57BL6NJ_T0073802.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117717481 117719427 - MGP_C57BL6NJ_P0073802 Ulk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073803.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117717503 117720535 - MGP_C57BL6NJ_P0073803 Ulk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073804.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117717520 117718703 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0073805.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117717575 117741468 - MGP_C57BL6NJ_P0073805 Ulk1 protein_coding protein_coding MGP_C57BL6NJ_T0073806.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117719372 117720149 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0073807.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117719738 117720948 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0073808.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117722879 117723674 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0073809.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117723154 117724887 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0073810.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117723877 117727279 - Ulk1 protein_coding processed_transcript MGP_C57BL6NJ_T0073811.1 MGP_C57BL6NJ_G0030323.1 mouse_genomes_project 5 117725082 117727316 - Ulk1 protein_coding retained_intron MGP_C57BL6NJ_T0008549.1 MGP_C57BL6NJ_G0006942.1 mouse_genomes_project 5 134813337 134841464 + 1700048F04Rik lincRNA lincRNA MGP_C57BL6NJ_T0072245.1 MGP_C57BL6NJ_G0029996.1 mouse_genomes_project 5 66305525 66341363 + MGP_C57BL6NJ_P0072245 Pgm1 protein_coding protein_coding MGP_C57BL6NJ_T0072246.1 MGP_C57BL6NJ_G0029996.1 mouse_genomes_project 5 66317387 66324749 + MGP_C57BL6NJ_P0072246 Pgm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072247.1 MGP_C57BL6NJ_G0029996.1 mouse_genomes_project 5 66320588 66322465 + Pgm1 protein_coding retained_intron MGP_C57BL6NJ_T0072248.1 MGP_C57BL6NJ_G0029996.1 mouse_genomes_project 5 66327949 66341176 + MGP_C57BL6NJ_P0072248 Pgm1 protein_coding protein_coding MGP_C57BL6NJ_T0076298.1 MGP_C57BL6NJ_G0030788.1 mouse_genomes_project 5 156048381 156059852 - MGP_C57BL6NJ_P0076298 Pdap1 protein_coding protein_coding MGP_C57BL6NJ_T0076299.1 MGP_C57BL6NJ_G0030788.1 mouse_genomes_project 5 156049697 156056310 - Pdap1 protein_coding processed_transcript MGP_C57BL6NJ_T0076300.1 MGP_C57BL6NJ_G0030788.1 mouse_genomes_project 5 156050984 156055086 - Pdap1 protein_coding retained_intron MGP_C57BL6NJ_T0076301.1 MGP_C57BL6NJ_G0030788.1 mouse_genomes_project 5 156052788 156055240 - Pdap1 protein_coding retained_intron MGP_C57BL6NJ_T0076302.1 MGP_C57BL6NJ_G0030788.1 mouse_genomes_project 5 156056191 156059612 - Pdap1 protein_coding retained_intron MGP_C57BL6NJ_T0071406.1 MGP_C57BL6NJ_G0029858.1 mouse_genomes_project 5 31364175 31376238 - MGP_C57BL6NJ_P0071406 Supt7l protein_coding protein_coding MGP_C57BL6NJ_T0071407.1 MGP_C57BL6NJ_G0029858.1 mouse_genomes_project 5 31366101 31376332 - MGP_C57BL6NJ_P0071407 Supt7l protein_coding protein_coding MGP_C57BL6NJ_T0071408.1 MGP_C57BL6NJ_G0029858.1 mouse_genomes_project 5 31371151 31377408 - Supt7l protein_coding retained_intron MGP_C57BL6NJ_T0071409.1 MGP_C57BL6NJ_G0029858.1 mouse_genomes_project 5 31375057 31376303 - Supt7l protein_coding retained_intron MGP_C57BL6NJ_T0001804.1 MGP_C57BL6NJ_G0001698.1 mouse_genomes_project 5 70410083 70413562 - TEC TEC MGP_C57BL6NJ_T0010909.1 MGP_C57BL6NJ_G0008994.1 mouse_genomes_project 5 5338133 5338242 + Gm22196 miRNA miRNA MGP_C57BL6NJ_T0070645.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681485 6724100 - MGP_C57BL6NJ_P0070645 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070646.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681489 6724130 - MGP_C57BL6NJ_P0070646 Dmtf1 protein_coding protein_coding MGP_C57BL6NJ_T0070647.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681490 6724140 - MGP_C57BL6NJ_P0070647 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070648.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681490 6724133 - MGP_C57BL6NJ_P0070648 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070649.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681494 6715569 - MGP_C57BL6NJ_P0070649 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070650.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681494 6724124 - MGP_C57BL6NJ_P0070650 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070651.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6681687 6724052 - MGP_C57BL6NJ_P0070651 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070652.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6682410 6683349 - Dmtf1 protein_coding retained_intron MGP_C57BL6NJ_T0070653.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6682646 6714339 - MGP_C57BL6NJ_P0070653 Dmtf1 protein_coding protein_coding MGP_C57BL6NJ_T0070654.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6684071 6689195 - MGP_C57BL6NJ_P0070654 Dmtf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070655.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6684675 6724124 - Dmtf1 protein_coding processed_transcript MGP_C57BL6NJ_T0070656.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6691984 6724118 - Dmtf1 protein_coding retained_intron MGP_C57BL6NJ_T0070657.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6693905 6724097 - MGP_C57BL6NJ_P0070657 Dmtf1 protein_coding protein_coding MGP_C57BL6NJ_T0070658.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6695176 6714466 - MGP_C57BL6NJ_P0070658 Dmtf1 protein_coding protein_coding MGP_C57BL6NJ_T0070659.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6702434 6724115 - Dmtf1 protein_coding retained_intron MGP_C57BL6NJ_T0070660.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6708788 6724130 - Dmtf1 protein_coding retained_intron MGP_C57BL6NJ_T0070661.1 MGP_C57BL6NJ_G0029721.1 mouse_genomes_project 5 6712854 6715359 - MGP_C57BL6NJ_P0070661 Dmtf1 protein_coding protein_coding MGP_C57BL6NJ_T0015236.1 MGP_C57BL6NJ_G0013281.1 mouse_genomes_project 5 4008611 4008900 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001860.1 MGP_C57BL6NJ_G0001753.1 mouse_genomes_project 5 102387919 102388404 + TEC TEC MGP_C57BL6NJ_T0015593.1 MGP_C57BL6NJ_G0013638.1 mouse_genomes_project 5 156357558 156358144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074381.1 MGP_C57BL6NJ_G0030437.1 mouse_genomes_project 5 128625575 128646938 + MGP_C57BL6NJ_P0074381 Iqcd protein_coding protein_coding MGP_C57BL6NJ_T0074382.1 MGP_C57BL6NJ_G0030437.1 mouse_genomes_project 5 128625582 128646942 + MGP_C57BL6NJ_P0074382 Iqcd protein_coding protein_coding MGP_C57BL6NJ_T0100465.1 MGP_C57BL6NJ_G0038511.1 mouse_genomes_project 5 91404056 91404162 - Gm24121 snRNA snRNA MGP_C57BL6NJ_T0004874.1 MGP_C57BL6NJ_G0004212.1 mouse_genomes_project 5 74565707 74584531 - Gm43477 antisense antisense MGP_C57BL6NJ_T0010935.1 MGP_C57BL6NJ_G0009020.1 mouse_genomes_project 5 69578890 69579004 - Gm23841 miRNA miRNA MGP_C57BL6NJ_T0004832.1 MGP_C57BL6NJ_G0004180.1 mouse_genomes_project 5 36975916 36977736 + Gm43701 antisense antisense MGP_C57BL6NJ_T0071904.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38482835 38508099 - MGP_C57BL6NJ_P0071904 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0071905.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38483778 38484473 - MGP_C57BL6NJ_P0071905 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0071906.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38483899 38507223 - MGP_C57BL6NJ_P0071906 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0071907.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38484186 38507597 - MGP_C57BL6NJ_P0071907 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0071908.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38490357 38507554 - MGP_C57BL6NJ_P0071908 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0071909.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38503524 38507665 - Nsg1 protein_coding retained_intron MGP_C57BL6NJ_T0071910.1 MGP_C57BL6NJ_G0029937.1 mouse_genomes_project 5 38507097 38507597 - MGP_C57BL6NJ_P0071910 Nsg1 protein_coding protein_coding MGP_C57BL6NJ_T0001654.1 MGP_C57BL6NJ_G0001550.1 mouse_genomes_project 5 38480242 38481741 - TEC TEC MGP_C57BL6NJ_T0076596.1 MGP_C57BL6NJ_G0030851.1 mouse_genomes_project 5 162640133 162684967 + MGP_C57BL6NJ_P0076596 Kl protein_coding protein_coding MGP_C57BL6NJ_T0076597.1 MGP_C57BL6NJ_G0030851.1 mouse_genomes_project 5 162640230 162676544 + Kl protein_coding retained_intron MGP_C57BL6NJ_T0102617.1 MGP_C57BL6NJ_G0040421.1 mouse_genomes_project 5 96814559 96820612 + unitary_pseudogene retained_intron MGP_C57BL6NJ_T0102618.1 MGP_C57BL6NJ_G0040421.1 mouse_genomes_project 5 96815060 96824323 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102619.1 MGP_C57BL6NJ_G0040421.1 mouse_genomes_project 5 96815074 96825242 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102620.1 MGP_C57BL6NJ_G0040421.1 mouse_genomes_project 5 96815503 96826723 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102256.1 MGP_C57BL6NJ_G0040246.1 mouse_genomes_project 5 22974757 22999846 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102257.1 MGP_C57BL6NJ_G0040246.1 mouse_genomes_project 5 22999028 22999572 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0072015.1 MGP_C57BL6NJ_G0029958.1 mouse_genomes_project 5 44680420 44683342 - MGP_C57BL6NJ_P0072015 Fgfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0072016.1 MGP_C57BL6NJ_G0029958.1 mouse_genomes_project 5 44680422 44683327 - MGP_C57BL6NJ_P0072016 Fgfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0072017.1 MGP_C57BL6NJ_G0029958.1 mouse_genomes_project 5 44680425 44682616 - MGP_C57BL6NJ_P0072017 Fgfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0070973.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23838915 23850042 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070974.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23840719 23872040 - MGP_C57BL6NJ_P0070974 Smarcd3 protein_coding protein_coding MGP_C57BL6NJ_T0070975.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23840719 23850078 - MGP_C57BL6NJ_P0070975 Smarcd3 protein_coding protein_coding MGP_C57BL6NJ_T0070977.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23842792 23844947 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070978.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23843261 23850001 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070979.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23843832 23847026 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070980.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23843843 23845087 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070981.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23843964 23849966 - Smarcd3 protein_coding retained_intron MGP_C57BL6NJ_T0070982.1 MGP_C57BL6NJ_G0029782.1 mouse_genomes_project 5 23870154 23870765 - Smarcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0071030.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26229026 26267562 + Dpp6 protein_coding processed_transcript MGP_C57BL6NJ_T0071031.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26229180 27168787 + MGP_C57BL6NJ_P0071031 Dpp6 protein_coding protein_coding MGP_C57BL6NJ_T0071032.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26229257 26882694 + Dpp6 protein_coding retained_intron MGP_C57BL6NJ_T0071033.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26324151 27170385 + MGP_C57BL6NJ_P0071033 Dpp6 protein_coding protein_coding MGP_C57BL6NJ_T0071034.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26475224 27170381 + MGP_C57BL6NJ_P0071034 Dpp6 protein_coding protein_coding MGP_C57BL6NJ_T0071035.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26475418 26478154 + Dpp6 protein_coding retained_intron MGP_C57BL6NJ_T0071036.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26689763 27170380 + MGP_C57BL6NJ_P0071036 Dpp6 protein_coding protein_coding MGP_C57BL6NJ_T0071037.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26689763 26820347 + MGP_C57BL6NJ_P0071037 Dpp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071038.1 MGP_C57BL6NJ_G0029795.1 mouse_genomes_project 5 26966264 27137533 + Dpp6 protein_coding retained_intron MGP_C57BL6NJ_T0073270.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105735035 105737527 - Hnrnpdl protein_coding processed_transcript MGP_C57BL6NJ_T0073271.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105735035 105740681 - MGP_C57BL6NJ_P0073271 Hnrnpdl protein_coding protein_coding MGP_C57BL6NJ_T0073272.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105736179 105740328 - MGP_C57BL6NJ_P0073272 Hnrnpdl protein_coding protein_coding MGP_C57BL6NJ_T0073273.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105736185 105741123 - MGP_C57BL6NJ_P0073273 Hnrnpdl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073274.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105736286 105738184 - Hnrnpdl protein_coding retained_intron MGP_C57BL6NJ_T0073275.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105736884 105740354 - MGP_C57BL6NJ_P0073275 Hnrnpdl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073276.1 MGP_C57BL6NJ_G0030213.1 mouse_genomes_project 5 105737418 105738582 - Hnrnpdl protein_coding retained_intron MGP_C57BL6NJ_T0072664.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78303536 78334542 + MGP_C57BL6NJ_P0072664 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072665.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78303550 78349133 + MGP_C57BL6NJ_P0072665 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072666.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78303596 78326166 + MGP_C57BL6NJ_P0072666 Pdgfra protein_coding non_stop_decay MGP_C57BL6NJ_T0072667.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78304179 78335156 + MGP_C57BL6NJ_P0072667 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072668.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78304830 78313736 + Pdgfra protein_coding retained_intron MGP_C57BL6NJ_T0072669.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78306318 78314765 + MGP_C57BL6NJ_P0072669 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072670.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78307120 78349119 + MGP_C57BL6NJ_P0072670 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072671.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78308054 78317576 + MGP_C57BL6NJ_P0072671 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0072672.1 MGP_C57BL6NJ_G0030068.1 mouse_genomes_project 5 78312849 78318953 + MGP_C57BL6NJ_P0072672 Pdgfra protein_coding protein_coding MGP_C57BL6NJ_T0008453.1 MGP_C57BL6NJ_G0006882.1 mouse_genomes_project 5 117289494 117291733 + Gm26711 lincRNA lincRNA MGP_C57BL6NJ_T0008319.1 MGP_C57BL6NJ_G0006780.1 mouse_genomes_project 5 60112023 60121439 - 4930459L07Rik lincRNA lincRNA MGP_C57BL6NJ_T0074642.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233235 131258365 + MGP_C57BL6NJ_P0074642 P2rx4 protein_coding protein_coding MGP_C57BL6NJ_T0074643.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233260 131237155 + P2rx4 protein_coding retained_intron MGP_C57BL6NJ_T0074644.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233261 131245973 + P2rx4 protein_coding retained_intron MGP_C57BL6NJ_T0074645.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233271 131253990 + MGP_C57BL6NJ_P0074645 P2rx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074646.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233275 131257671 + MGP_C57BL6NJ_P0074646 P2rx4 protein_coding protein_coding MGP_C57BL6NJ_T0074647.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233345 131256940 + MGP_C57BL6NJ_P0074647 P2rx4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074648.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233345 131256950 + MGP_C57BL6NJ_P0074648 P2rx4 protein_coding protein_coding MGP_C57BL6NJ_T0074649.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131233345 131256950 + MGP_C57BL6NJ_P0074649 P2rx4 protein_coding protein_coding MGP_C57BL6NJ_T0074650.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131253278 131253889 + P2rx4 protein_coding retained_intron MGP_C57BL6NJ_T0074651.1 MGP_C57BL6NJ_G0030485.1 mouse_genomes_project 5 131256290 131257212 + P2rx4 protein_coding processed_transcript MGP_C57BL6NJ_T0074885.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133010707 133091538 - MGP_C57BL6NJ_P0074885 Mphosph9 protein_coding protein_coding MGP_C57BL6NJ_T0074886.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133012418 133091415 - MGP_C57BL6NJ_P0074886 Mphosph9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074887.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133013416 133091418 - MGP_C57BL6NJ_P0074887 Mphosph9 protein_coding protein_coding MGP_C57BL6NJ_T0074888.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133014366 133020852 - Mphosph9 protein_coding processed_transcript MGP_C57BL6NJ_T0074889.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133018741 133025068 - Mphosph9 protein_coding processed_transcript MGP_C57BL6NJ_T0074890.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133020688 133022761 - Mphosph9 protein_coding processed_transcript MGP_C57BL6NJ_T0074891.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133021693 133023132 - Mphosph9 protein_coding retained_intron MGP_C57BL6NJ_T0074892.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133051857 133091436 - MGP_C57BL6NJ_P0074892 Mphosph9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074893.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133061401 133088693 - MGP_C57BL6NJ_P0074893 Mphosph9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074894.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133078765 133091538 - Mphosph9 protein_coding processed_transcript MGP_C57BL6NJ_T0074895.1 MGP_C57BL6NJ_G0030520.1 mouse_genomes_project 5 133078765 133091418 - Mphosph9 protein_coding processed_transcript MGP_C57BL6NJ_T0070886.1 MGP_C57BL6NJ_G0029766.1 mouse_genomes_project 5 23363019 23381964 + MGP_C57BL6NJ_P0070886 Nupl2 protein_coding protein_coding MGP_C57BL6NJ_T0070887.1 MGP_C57BL6NJ_G0029766.1 mouse_genomes_project 5 23363056 23380788 + MGP_C57BL6NJ_P0070887 Nupl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0070888.1 MGP_C57BL6NJ_G0029766.1 mouse_genomes_project 5 23365564 23367928 + Nupl2 protein_coding retained_intron MGP_C57BL6NJ_T0070889.1 MGP_C57BL6NJ_G0029766.1 mouse_genomes_project 5 23375913 23379383 + Nupl2 protein_coding retained_intron MGP_C57BL6NJ_T0072488.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72281703 72299388 - MGP_C57BL6NJ_P0072488 Gnpda2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072489.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72283596 72300944 - MGP_C57BL6NJ_P0072489 Gnpda2 protein_coding protein_coding MGP_C57BL6NJ_T0072490.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72283765 72299424 - MGP_C57BL6NJ_P0072490 Gnpda2 protein_coding protein_coding MGP_C57BL6NJ_T0072491.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72283770 72300850 - Gnpda2 protein_coding retained_intron MGP_C57BL6NJ_T0072492.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72284407 72300878 - MGP_C57BL6NJ_P0072492 Gnpda2 protein_coding protein_coding MGP_C57BL6NJ_T0072493.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72285337 72300897 - MGP_C57BL6NJ_P0072493 Gnpda2 protein_coding protein_coding MGP_C57BL6NJ_T0072494.1 MGP_C57BL6NJ_G0030035.1 mouse_genomes_project 5 72293596 72300893 - MGP_C57BL6NJ_P0072494 Gnpda2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072224.1 MGP_C57BL6NJ_G0029990.1 mouse_genomes_project 5 63890845 63893193 + MGP_C57BL6NJ_P0072224 G6pd2 protein_coding protein_coding MGP_C57BL6NJ_T0075406.1 MGP_C57BL6NJ_G0030608.1 mouse_genomes_project 5 144919141 144981721 + MGP_C57BL6NJ_P0075406 Baz1b protein_coding protein_coding MGP_C57BL6NJ_T0075407.1 MGP_C57BL6NJ_G0030608.1 mouse_genomes_project 5 144931690 144934708 + Baz1b protein_coding retained_intron MGP_C57BL6NJ_T0075408.1 MGP_C57BL6NJ_G0030608.1 mouse_genomes_project 5 144939435 144945524 + Baz1b protein_coding retained_intron MGP_C57BL6NJ_T0075409.1 MGP_C57BL6NJ_G0030608.1 mouse_genomes_project 5 144942071 144951721 + Baz1b protein_coding retained_intron MGP_C57BL6NJ_T0075410.1 MGP_C57BL6NJ_G0030608.1 mouse_genomes_project 5 144977983 144979774 + Baz1b protein_coding retained_intron MGP_C57BL6NJ_T0074705.1 MGP_C57BL6NJ_G0030491.1 mouse_genomes_project 5 131601116 131613184 - MGP_C57BL6NJ_P0074705 Morn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074706.1 MGP_C57BL6NJ_G0030491.1 mouse_genomes_project 5 131601136 131603056 - MGP_C57BL6NJ_P0074706 Morn3 protein_coding protein_coding MGP_C57BL6NJ_T0074707.1 MGP_C57BL6NJ_G0030491.1 mouse_genomes_project 5 131601209 131603064 - MGP_C57BL6NJ_P0074707 Morn3 protein_coding protein_coding MGP_C57BL6NJ_T0074708.1 MGP_C57BL6NJ_G0030491.1 mouse_genomes_project 5 131602634 131615703 - MGP_C57BL6NJ_P0074708 Morn3 protein_coding protein_coding MGP_C57BL6NJ_T0074709.1 MGP_C57BL6NJ_G0030491.1 mouse_genomes_project 5 131602656 131613173 - MGP_C57BL6NJ_P0074709 Morn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073989.1 MGP_C57BL6NJ_G0030362.1 mouse_genomes_project 5 121361829 121370767 + MGP_C57BL6NJ_P0073989 Ung protein_coding protein_coding MGP_C57BL6NJ_T0073990.1 MGP_C57BL6NJ_G0030362.1 mouse_genomes_project 5 121362672 121369820 + MGP_C57BL6NJ_P0073990 Ung protein_coding protein_coding MGP_C57BL6NJ_T0073991.1 MGP_C57BL6NJ_G0030362.1 mouse_genomes_project 5 121362672 121369822 + MGP_C57BL6NJ_P0073991 Ung protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073992.1 MGP_C57BL6NJ_G0030362.1 mouse_genomes_project 5 121363451 121369747 + MGP_C57BL6NJ_P0073992 Ung protein_coding protein_coding MGP_C57BL6NJ_T0073993.1 MGP_C57BL6NJ_G0030362.1 mouse_genomes_project 5 121363523 121366622 + Ung protein_coding retained_intron MGP_C57BL6NJ_T0008419.1 MGP_C57BL6NJ_G0006858.1 mouse_genomes_project 5 109121874 109201418 - 4930429D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008300.1 MGP_C57BL6NJ_G0006762.1 mouse_genomes_project 5 44137848 44142010 + Gm43021 lincRNA lincRNA MGP_C57BL6NJ_T0074560.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130534886 130577589 - MGP_C57BL6NJ_P0074560 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074561.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130534909 130539886 - protein_coding retained_intron MGP_C57BL6NJ_T0074562.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130534924 130583073 - MGP_C57BL6NJ_P0074562 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074563.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130569104 130577171 - MGP_C57BL6NJ_P0074563 protein_coding protein_coding MGP_C57BL6NJ_T0074564.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130575065 130577171 - MGP_C57BL6NJ_P0074564 protein_coding protein_coding MGP_C57BL6NJ_T0074565.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130582694 130587215 - protein_coding retained_intron MGP_C57BL6NJ_T0074566.1 MGP_C57BL6NJ_G0030471.1 mouse_genomes_project 5 130584376 130589081 - protein_coding retained_intron MGP_C57BL6NJ_T0072783.1 MGP_C57BL6NJ_G0030090.1 mouse_genomes_project 5 80711394 80781504 - MGP_C57BL6NJ_P0072783 Igfbp7 protein_coding protein_coding MGP_C57BL6NJ_T0072784.1 MGP_C57BL6NJ_G0030090.1 mouse_genomes_project 5 80711402 80781503 - MGP_C57BL6NJ_P0072784 Igfbp7 protein_coding protein_coding MGP_C57BL6NJ_T0010960.1 MGP_C57BL6NJ_G0009045.1 mouse_genomes_project 5 123033664 123033725 + Mir7029 miRNA miRNA MGP_C57BL6NJ_T0001964.1 MGP_C57BL6NJ_G0001856.1 mouse_genomes_project 5 133339777 133341141 + TEC TEC MGP_C57BL6NJ_T0075525.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145983354 145996647 - MGP_C57BL6NJ_P0075525 Lrwd1 protein_coding protein_coding MGP_C57BL6NJ_T0075526.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145983649 145996574 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075527.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145983657 145986142 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075528.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145984274 145990825 - MGP_C57BL6NJ_P0075528 Lrwd1 protein_coding protein_coding MGP_C57BL6NJ_T0075529.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145989983 145996595 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075530.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145991255 145996575 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075531.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145992246 145996635 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075532.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145992878 145994449 - Lrwd1 protein_coding retained_intron MGP_C57BL6NJ_T0075533.1 MGP_C57BL6NJ_G0030632.1 mouse_genomes_project 5 145993603 145996570 - MGP_C57BL6NJ_P0075533 Lrwd1 protein_coding protein_coding MGP_C57BL6NJ_T0071998.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44422028 44460587 - MGP_C57BL6NJ_P0071998 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0071999.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44422029 44460553 - MGP_C57BL6NJ_P0071999 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072000.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44422037 44505561 - MGP_C57BL6NJ_P0072000 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072001.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44422712 44460492 - MGP_C57BL6NJ_P0072001 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072002.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44428019 44460546 - MGP_C57BL6NJ_P0072002 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072003.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44433318 44460565 - MGP_C57BL6NJ_P0072003 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072004.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44435298 44460581 - MGP_C57BL6NJ_P0072004 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0072005.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44436103 44437298 - Fbxl5 protein_coding retained_intron MGP_C57BL6NJ_T0072006.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44438445 44460546 - Fbxl5 protein_coding retained_intron MGP_C57BL6NJ_T0072007.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44439725 44460562 - Fbxl5 protein_coding retained_intron MGP_C57BL6NJ_T0072008.1 MGP_C57BL6NJ_G0029955.1 mouse_genomes_project 5 44445607 44460544 - MGP_C57BL6NJ_P0072008 Fbxl5 protein_coding protein_coding MGP_C57BL6NJ_T0073434.1 MGP_C57BL6NJ_G0030246.1 mouse_genomes_project 5 110489950 110537736 + MGP_C57BL6NJ_P0073434 Pkd2 protein_coding protein_coding MGP_C57BL6NJ_T0073435.1 MGP_C57BL6NJ_G0030246.1 mouse_genomes_project 5 110490070 110520475 + Pkd2 protein_coding processed_transcript MGP_C57BL6NJ_T0073436.1 MGP_C57BL6NJ_G0030246.1 mouse_genomes_project 5 110522925 110531504 + Pkd2 protein_coding retained_intron MGP_C57BL6NJ_T0015587.1 MGP_C57BL6NJ_G0013632.1 mouse_genomes_project 5 154858062 154859835 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071055.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27837501 27880419 + MGP_C57BL6NJ_P0071055 Rbm33 protein_coding non_stop_decay MGP_C57BL6NJ_T0071056.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27837557 27959652 + MGP_C57BL6NJ_P0071056 Rbm33 protein_coding protein_coding MGP_C57BL6NJ_T0071057.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27837557 27956518 + MGP_C57BL6NJ_P0071057 Rbm33 protein_coding protein_coding MGP_C57BL6NJ_T0071058.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27837582 27883298 + MGP_C57BL6NJ_P0071058 Rbm33 protein_coding protein_coding MGP_C57BL6NJ_T0071059.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27928337 27954090 + MGP_C57BL6NJ_P0071059 Rbm33 protein_coding protein_coding MGP_C57BL6NJ_T0071060.1 MGP_C57BL6NJ_G0029801.1 mouse_genomes_project 5 27951073 27954442 + MGP_C57BL6NJ_P0071060 Rbm33 protein_coding protein_coding MGP_C57BL6NJ_T0002003.1 MGP_C57BL6NJ_G0001895.1 mouse_genomes_project 5 141618486 141620122 - TEC TEC MGP_C57BL6NJ_T0004894.1 MGP_C57BL6NJ_G0004229.1 mouse_genomes_project 5 97180325 97194028 + Gm43599 antisense antisense MGP_C57BL6NJ_T0001916.1 MGP_C57BL6NJ_G0001809.1 mouse_genomes_project 5 123402674 123404531 + TEC TEC MGP_C57BL6NJ_T0074423.1 MGP_C57BL6NJ_G0030450.1 mouse_genomes_project 5 129107589 129186476 - MGP_C57BL6NJ_P0074423 Rph3a protein_coding protein_coding MGP_C57BL6NJ_T0074424.1 MGP_C57BL6NJ_G0030450.1 mouse_genomes_project 5 129107589 129185934 - MGP_C57BL6NJ_P0074424 Rph3a protein_coding protein_coding MGP_C57BL6NJ_T0074425.1 MGP_C57BL6NJ_G0030450.1 mouse_genomes_project 5 129108931 129184938 - MGP_C57BL6NJ_P0074425 Rph3a protein_coding protein_coding MGP_C57BL6NJ_T0074426.1 MGP_C57BL6NJ_G0030450.1 mouse_genomes_project 5 129140418 129186488 - MGP_C57BL6NJ_P0074426 Rph3a protein_coding protein_coding MGP_C57BL6NJ_T0073169.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051344 98136712 + MGP_C57BL6NJ_P0073169 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073170.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051345 98051985 + Sept11 protein_coding retained_intron MGP_C57BL6NJ_T0073171.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051345 98131192 + MGP_C57BL6NJ_P0073171 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073172.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051355 98121469 + MGP_C57BL6NJ_P0073172 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073173.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051358 98138191 + MGP_C57BL6NJ_P0073173 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073174.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051433 98138201 + MGP_C57BL6NJ_P0073174 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073175.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051443 98108778 + MGP_C57BL6NJ_P0073175 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073176.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98051478 98137831 + MGP_C57BL6NJ_P0073176 Sept11 protein_coding protein_coding MGP_C57BL6NJ_T0073177.1 MGP_C57BL6NJ_G0030188.1 mouse_genomes_project 5 98108737 98117925 + Sept11 protein_coding retained_intron MGP_C57BL6NJ_T0004867.1 MGP_C57BL6NJ_G0004206.1 mouse_genomes_project 5 69517376 69519752 - Gm15948 antisense antisense MGP_C57BL6NJ_T0073324.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106519641 106557232 - MGP_C57BL6NJ_P0073324 Helq protein_coding protein_coding MGP_C57BL6NJ_T0073325.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106519647 106522935 - Helq protein_coding retained_intron MGP_C57BL6NJ_T0073326.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106519943 106557102 - MGP_C57BL6NJ_P0073326 Helq protein_coding protein_coding MGP_C57BL6NJ_T0073327.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106519952 106524310 - Helq protein_coding retained_intron MGP_C57BL6NJ_T0073328.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106524233 106531533 - MGP_C57BL6NJ_P0073328 Helq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073329.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106529044 106531617 - Helq protein_coding retained_intron MGP_C57BL6NJ_T0073330.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106535881 106541713 - Helq protein_coding retained_intron MGP_C57BL6NJ_T0073331.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106541811 106551360 - Helq protein_coding processed_transcript MGP_C57BL6NJ_T0073332.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106541892 106557211 - MGP_C57BL6NJ_P0073332 Helq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0073333.1 MGP_C57BL6NJ_G0030222.1 mouse_genomes_project 5 106550405 106551686 - Helq protein_coding retained_intron MGP_C57BL6NJ_T0015493.1 MGP_C57BL6NJ_G0013538.1 mouse_genomes_project 5 112725886 112726742 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015584.1 MGP_C57BL6NJ_G0013629.1 mouse_genomes_project 5 153786435 153786655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001899.1 MGP_C57BL6NJ_G0001792.1 mouse_genomes_project 5 119444036 119445297 + TEC TEC MGP_C57BL6NJ_T0008360.1 MGP_C57BL6NJ_G0006812.1 mouse_genomes_project 5 79738418 79767867 + lincRNA lincRNA MGP_C57BL6NJ_T0008361.1 MGP_C57BL6NJ_G0006812.1 mouse_genomes_project 5 79738709 79767823 + lincRNA lincRNA MGP_C57BL6NJ_T0100475.1 MGP_C57BL6NJ_G0038521.1 mouse_genomes_project 5 112494470 112494577 - Gm25672 snRNA snRNA MGP_C57BL6NJ_T0099560.1 MGP_C57BL6NJ_G0037607.1 mouse_genomes_project 5 132180079 132187501 + Gm15751 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0001717.1 MGP_C57BL6NJ_G0001612.1 mouse_genomes_project 5 50354202 50357252 - TEC TEC MGP_C57BL6NJ_T0015358.1 MGP_C57BL6NJ_G0013403.1 mouse_genomes_project 5 50885689 50887986 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073044.1 MGP_C57BL6NJ_G0030161.1 mouse_genomes_project 5 95644813 95646688 + MGP_C57BL6NJ_P0073044 Cxcl1 protein_coding protein_coding MGP_C57BL6NJ_T0073045.1 MGP_C57BL6NJ_G0030161.1 mouse_genomes_project 5 95644815 95646686 + Cxcl1 protein_coding retained_intron MGP_C57BL6NJ_T0008484.1 MGP_C57BL6NJ_G0006897.1 mouse_genomes_project 5 119663156 119670217 - 1700034G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008485.1 MGP_C57BL6NJ_G0006897.1 mouse_genomes_project 5 119663238 119670217 - 1700034G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0015288.1 MGP_C57BL6NJ_G0013333.1 mouse_genomes_project 5 23273525 23274010 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0074634.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131155960 131196345 + MGP_C57BL6NJ_P0074634 P2rx7 protein_coding protein_coding MGP_C57BL6NJ_T0074635.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131155960 131196337 + MGP_C57BL6NJ_P0074635 P2rx7 protein_coding protein_coding MGP_C57BL6NJ_T0074636.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131155988 131203500 + MGP_C57BL6NJ_P0074636 P2rx7 protein_coding protein_coding MGP_C57BL6NJ_T0074637.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131156058 131167248 + MGP_C57BL6NJ_P0074637 P2rx7 protein_coding protein_coding MGP_C57BL6NJ_T0074638.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131156214 131159844 + P2rx7 protein_coding processed_transcript MGP_C57BL6NJ_T0074639.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131162409 131193421 + P2rx7 protein_coding processed_transcript MGP_C57BL6NJ_T0074640.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131193989 131195572 + P2rx7 protein_coding processed_transcript MGP_C57BL6NJ_T0074641.1 MGP_C57BL6NJ_G0030484.1 mouse_genomes_project 5 131194229 131196332 + P2rx7 protein_coding retained_intron MGP_C57BL6NJ_T0099270.1 MGP_C57BL6NJ_G0037334.1 mouse_genomes_project 5 2230515 2230642 - Gm22897 scaRNA scaRNA MGP_C57BL6NJ_T0071103.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29747074 29773443 - MGP_C57BL6NJ_P0071103 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071104.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29747142 29773510 - protein_coding retained_intron MGP_C57BL6NJ_T0071105.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29747209 29773465 - MGP_C57BL6NJ_P0071105 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071106.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29748058 29773477 - MGP_C57BL6NJ_P0071106 protein_coding protein_coding MGP_C57BL6NJ_T0071107.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29750479 29773448 - MGP_C57BL6NJ_P0071107 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071108.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29751089 29773482 - protein_coding retained_intron MGP_C57BL6NJ_T0071109.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29751346 29773472 - MGP_C57BL6NJ_P0071109 protein_coding protein_coding MGP_C57BL6NJ_T0071110.1 MGP_C57BL6NJ_G0029811.1 mouse_genomes_project 5 29767783 29773418 - protein_coding processed_transcript MGP_C57BL6NJ_T0072317.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67766657 67816687 - MGP_C57BL6NJ_P0072317 Smim14 protein_coding protein_coding MGP_C57BL6NJ_T0072318.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67769571 67816347 - MGP_C57BL6NJ_P0072318 Smim14 protein_coding protein_coding MGP_C57BL6NJ_T0072319.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67769572 67816158 - MGP_C57BL6NJ_P0072319 Smim14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072320.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67769695 67780883 - Smim14 protein_coding retained_intron MGP_C57BL6NJ_T0072321.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67772566 67778091 - Smim14 protein_coding retained_intron MGP_C57BL6NJ_T0072322.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67780137 67861101 - MGP_C57BL6NJ_P0072322 Smim14 protein_coding protein_coding MGP_C57BL6NJ_T0072323.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67787252 67861046 - Smim14 protein_coding retained_intron MGP_C57BL6NJ_T0072324.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67789200 67816168 - Smim14 protein_coding retained_intron MGP_C57BL6NJ_T0072325.1 MGP_C57BL6NJ_G0030011.1 mouse_genomes_project 5 67813231 67816687 - Smim14 protein_coding retained_intron MGP_C57BL6NJ_T0015554.1 MGP_C57BL6NJ_G0013599.1 mouse_genomes_project 5 143498626 143499470 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0070687.1 MGP_C57BL6NJ_G0029727.1 mouse_genomes_project 5 12148449 12156162 + MGP_C57BL6NJ_P0070687 protein_coding protein_coding MGP_C57BL6NJ_T0074047.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122008762 122023308 + MGP_C57BL6NJ_P0074047 Tchp protein_coding protein_coding MGP_C57BL6NJ_T0074048.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122008801 122010423 + Tchp protein_coding processed_transcript MGP_C57BL6NJ_T0074049.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122008846 122023308 + Tchp protein_coding retained_intron MGP_C57BL6NJ_T0074050.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122012048 122014881 + Tchp protein_coding retained_intron MGP_C57BL6NJ_T0074051.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122015615 122020670 + MGP_C57BL6NJ_P0074051 Tchp protein_coding protein_coding MGP_C57BL6NJ_T0074052.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122015941 122023308 + Tchp protein_coding processed_transcript MGP_C57BL6NJ_T0074053.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122018540 122019700 + Tchp protein_coding retained_intron MGP_C57BL6NJ_T0074054.1 MGP_C57BL6NJ_G0030373.1 mouse_genomes_project 5 122020664 122022139 + Tchp protein_coding retained_intron MGP_C57BL6NJ_T0075022.1 MGP_C57BL6NJ_G0030542.1 mouse_genomes_project 5 134288649 134307435 + MGP_C57BL6NJ_P0075022 Bri3bp protein_coding protein_coding MGP_C57BL6NJ_T0075023.1 MGP_C57BL6NJ_G0030542.1 mouse_genomes_project 5 134288831 134301791 + MGP_C57BL6NJ_P0075023 Bri3bp protein_coding protein_coding MGP_C57BL6NJ_T0074124.1 MGP_C57BL6NJ_G0030389.1 mouse_genomes_project 5 122528698 122543817 - MGP_C57BL6NJ_P0074124 Mlec protein_coding protein_coding MGP_C57BL6NJ_T0074125.1 MGP_C57BL6NJ_G0030389.1 mouse_genomes_project 5 122533823 122536690 - Mlec protein_coding processed_transcript MGP_C57BL6NJ_T0015290.1 MGP_C57BL6NJ_G0013335.1 mouse_genomes_project 5 23406978 23407376 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015386.1 MGP_C57BL6NJ_G0013431.1 mouse_genomes_project 5 62760231 62761000 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072129.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 50948665 51051791 - MGP_C57BL6NJ_P0072129 Adgra3 protein_coding protein_coding MGP_C57BL6NJ_T0072130.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 50954819 50960785 - Adgra3 protein_coding processed_transcript MGP_C57BL6NJ_T0072131.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 50977038 50990822 - Adgra3 protein_coding processed_transcript MGP_C57BL6NJ_T0072132.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 50996933 50999479 - Adgra3 protein_coding retained_intron MGP_C57BL6NJ_T0072133.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 51043173 51046164 - Adgra3 protein_coding retained_intron MGP_C57BL6NJ_T0072134.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 51043653 51051430 - Adgra3 protein_coding processed_transcript MGP_C57BL6NJ_T0072135.1 MGP_C57BL6NJ_G0029972.1 mouse_genomes_project 5 51050908 51051430 - Adgra3 protein_coding retained_intron MGP_C57BL6NJ_T0072161.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53916285 53975589 + Zcchc4 protein_coding processed_transcript MGP_C57BL6NJ_T0072162.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53924816 53975332 + MGP_C57BL6NJ_P0072162 Zcchc4 protein_coding protein_coding MGP_C57BL6NJ_T0072163.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53924816 53976426 + MGP_C57BL6NJ_P0072163 Zcchc4 protein_coding protein_coding MGP_C57BL6NJ_T0072164.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53924848 53941924 + Zcchc4 protein_coding retained_intron MGP_C57BL6NJ_T0072165.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53924878 53937855 + MGP_C57BL6NJ_P0072165 Zcchc4 protein_coding protein_coding MGP_C57BL6NJ_T0072166.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53924884 53937887 + Zcchc4 protein_coding processed_transcript MGP_C57BL6NJ_T0072167.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53939785 53970945 + Zcchc4 protein_coding processed_transcript MGP_C57BL6NJ_T0072168.1 MGP_C57BL6NJ_G0029980.1 mouse_genomes_project 5 53947688 53965859 + Zcchc4 protein_coding retained_intron MGP_C57BL6NJ_T0008249.1 MGP_C57BL6NJ_G0006730.1 mouse_genomes_project 5 25829158 25865492 - 4930584F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008250.1 MGP_C57BL6NJ_G0006730.1 mouse_genomes_project 5 25829160 25865517 - 4930584F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008251.1 MGP_C57BL6NJ_G0006730.1 mouse_genomes_project 5 25829162 25865481 - 4930584F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008252.1 MGP_C57BL6NJ_G0006730.1 mouse_genomes_project 5 25847129 25865492 - 4930584F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0103226.1 MGP_C57BL6NJ_G0041020.1 mouse_genomes_project 5 163148930 163175530 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0076378.1 MGP_C57BL6NJ_G0030814.1 mouse_genomes_project 5 157739579 157741586 - Gpr12 protein_coding retained_intron MGP_C57BL6NJ_T0076379.1 MGP_C57BL6NJ_G0030814.1 mouse_genomes_project 5 157739581 157742421 - MGP_C57BL6NJ_P0076379 Gpr12 protein_coding protein_coding MGP_C57BL6NJ_T0076380.1 MGP_C57BL6NJ_G0030814.1 mouse_genomes_project 5 157739933 157742014 - MGP_C57BL6NJ_P0076380 Gpr12 protein_coding protein_coding MGP_C57BL6NJ_T0076381.1 MGP_C57BL6NJ_G0030814.1 mouse_genomes_project 5 157740652 157742001 - MGP_C57BL6NJ_P0076381 Gpr12 protein_coding protein_coding MGP_C57BL6NJ_T0076382.1 MGP_C57BL6NJ_G0030814.1 mouse_genomes_project 5 157740836 157742025 - MGP_C57BL6NJ_P0076382 Gpr12 protein_coding protein_coding MGP_C57BL6NJ_T0073397.1 MGP_C57BL6NJ_G0030234.1 mouse_genomes_project 5 109628671 109773269 + Aff1 protein_coding retained_intron MGP_C57BL6NJ_T0073398.1 MGP_C57BL6NJ_G0030234.1 mouse_genomes_project 5 109707698 109812775 + MGP_C57BL6NJ_P0073398 Aff1 protein_coding protein_coding MGP_C57BL6NJ_T0073399.1 MGP_C57BL6NJ_G0030234.1 mouse_genomes_project 5 109708134 109799706 + MGP_C57BL6NJ_P0073399 Aff1 protein_coding protein_coding MGP_C57BL6NJ_T0073400.1 MGP_C57BL6NJ_G0030234.1 mouse_genomes_project 5 109708143 109812775 + MGP_C57BL6NJ_P0073400 Aff1 protein_coding protein_coding MGP_C57BL6NJ_T0073401.1 MGP_C57BL6NJ_G0030234.1 mouse_genomes_project 5 109738969 109768436 + Aff1 protein_coding retained_intron MGP_C57BL6NJ_T0015397.1 MGP_C57BL6NJ_G0013442.1 mouse_genomes_project 5 66409106 66409925 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015282.1 MGP_C57BL6NJ_G0013327.1 mouse_genomes_project 5 21729637 21730754 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071477.1 MGP_C57BL6NJ_G0029868.1 mouse_genomes_project 5 32726873 32738001 - MGP_C57BL6NJ_P0071477 protein_coding protein_coding MGP_C57BL6NJ_T0071478.1 MGP_C57BL6NJ_G0029868.1 mouse_genomes_project 5 32728179 32738100 - MGP_C57BL6NJ_P0071478 protein_coding protein_coding MGP_C57BL6NJ_T0071479.1 MGP_C57BL6NJ_G0029868.1 mouse_genomes_project 5 32732025 32778842 - MGP_C57BL6NJ_P0071479 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0071480.1 MGP_C57BL6NJ_G0029868.1 mouse_genomes_project 5 32757232 32778855 - protein_coding retained_intron MGP_C57BL6NJ_T0002028.1 MGP_C57BL6NJ_G0001919.1 mouse_genomes_project 5 150445394 150447940 - TEC TEC MGP_C57BL6NJ_T0015605.1 MGP_C57BL6NJ_G0013650.1 mouse_genomes_project 5 158574403 158574869 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008268.1 MGP_C57BL6NJ_G0006742.1 mouse_genomes_project 5 34036105 34037835 + lincRNA lincRNA MGP_C57BL6NJ_T0015356.1 MGP_C57BL6NJ_G0013401.1 mouse_genomes_project 5 50369261 50369574 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001880.1 MGP_C57BL6NJ_G0001773.1 mouse_genomes_project 5 111865895 111868067 + TEC TEC MGP_C57BL6NJ_T0072934.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92548759 92555371 + MGP_C57BL6NJ_P0072934 Csn3 protein_coding protein_coding MGP_C57BL6NJ_T0072935.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92548787 92553866 + MGP_C57BL6NJ_P0072935 Csn3 protein_coding protein_coding MGP_C57BL6NJ_T0072936.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92548792 92552303 + Csn3 protein_coding retained_intron MGP_C57BL6NJ_T0072937.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92548807 92552303 + Csn3 protein_coding retained_intron MGP_C57BL6NJ_T0072938.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92548815 92554971 + MGP_C57BL6NJ_P0072938 Csn3 protein_coding protein_coding MGP_C57BL6NJ_T0072939.1 MGP_C57BL6NJ_G0030126.1 mouse_genomes_project 5 92550859 92552989 + Csn3 protein_coding retained_intron MGP_C57BL6NJ_T0072458.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70181250 70424157 - MGP_C57BL6NJ_P0072458 Atp8a1 protein_coding protein_coding MGP_C57BL6NJ_T0072459.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70181250 70424093 - MGP_C57BL6NJ_P0072459 Atp8a1 protein_coding protein_coding MGP_C57BL6NJ_T0072460.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70182271 70424154 - MGP_C57BL6NJ_P0072460 Atp8a1 protein_coding protein_coding MGP_C57BL6NJ_T0072461.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70183686 70424018 - MGP_C57BL6NJ_P0072461 Atp8a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072462.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70185789 70230138 - Atp8a1 protein_coding processed_transcript MGP_C57BL6NJ_T0072463.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70254592 70350552 - Atp8a1 protein_coding retained_intron MGP_C57BL6NJ_T0072464.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70338359 70340842 - Atp8a1 protein_coding retained_intron MGP_C57BL6NJ_T0072465.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70354776 70423933 - MGP_C57BL6NJ_P0072465 Atp8a1 protein_coding protein_coding MGP_C57BL6NJ_T0072466.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70359841 70424152 - Atp8a1 protein_coding retained_intron MGP_C57BL6NJ_T0072467.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70381405 70384765 - Atp8a1 protein_coding retained_intron MGP_C57BL6NJ_T0072468.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70388196 70391259 - Atp8a1 protein_coding retained_intron MGP_C57BL6NJ_T0072469.1 MGP_C57BL6NJ_G0030028.1 mouse_genomes_project 5 70388200 70392727 - MGP_C57BL6NJ_P0072469 Atp8a1 protein_coding protein_coding MGP_C57BL6NJ_T0015611.1 MGP_C57BL6NJ_G0013656.1 mouse_genomes_project 5 159575218 159576697 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001737.1 MGP_C57BL6NJ_G0001632.1 mouse_genomes_project 5 56113744 56116425 + TEC TEC MGP_C57BL6NJ_T0015494.1 MGP_C57BL6NJ_G0013539.1 mouse_genomes_project 5 112814426 112814749 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072650.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77709115 77806229 - MGP_C57BL6NJ_P0072650 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072651.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77709115 77798416 - MGP_C57BL6NJ_P0072651 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072652.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77709115 77798417 - MGP_C57BL6NJ_P0072652 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072653.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77709347 77798402 - MGP_C57BL6NJ_P0072653 Lnx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0072655.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77713772 77823365 - MGP_C57BL6NJ_P0072655 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072656.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77713772 77798173 - MGP_C57BL6NJ_P0072656 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072657.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77713772 77798417 - MGP_C57BL6NJ_P0072657 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072658.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77713772 77798344 - MGP_C57BL6NJ_P0072658 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0072659.1 MGP_C57BL6NJ_G0030065.1 mouse_genomes_project 5 77714444 77741541 - MGP_C57BL6NJ_P0072659 Lnx1 protein_coding protein_coding MGP_C57BL6NJ_T0073905.1 MGP_C57BL6NJ_G0030344.1 mouse_genomes_project 5 120218305 120305122 - MGP_C57BL6NJ_P0073905 2900026A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0073906.1 MGP_C57BL6NJ_G0030344.1 mouse_genomes_project 5 120224393 120274746 - MGP_C57BL6NJ_P0073906 2900026A02Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0015293.1 MGP_C57BL6NJ_G0013338.1 mouse_genomes_project 5 24425415 24425981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004933.1 MGP_C57BL6NJ_G0004252.1 mouse_genomes_project 5 117226288 117228286 - Gm15792 antisense antisense MGP_C57BL6NJ_T0018677.1 MGP_C57BL6NJ_G0016012.1 mouse_genomes_project 5 161426365 161442899 + 4930500F04Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018678.1 MGP_C57BL6NJ_G0016012.1 mouse_genomes_project 5 161426583 161442895 + 4930500F04Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018679.1 MGP_C57BL6NJ_G0016012.1 mouse_genomes_project 5 161430917 161433024 + 4930500F04Rik processed_transcript retained_intron MGP_C57BL6NJ_T0008498.1 MGP_C57BL6NJ_G0006906.1 mouse_genomes_project 5 122778774 122826293 + Gm13832 lincRNA lincRNA MGP_C57BL6NJ_T0008499.1 MGP_C57BL6NJ_G0006906.1 mouse_genomes_project 5 122778793 122853363 + Gm13832 lincRNA lincRNA MGP_C57BL6NJ_T0001801.1 MGP_C57BL6NJ_G0001695.1 mouse_genomes_project 5 70170328 70170937 - TEC TEC MGP_C57BL6NJ_T0073016.1 MGP_C57BL6NJ_G0030151.1 mouse_genomes_project 5 95203123 95219593 + MGP_C57BL6NJ_P0073016 Alb protein_coding protein_coding MGP_C57BL6NJ_T0073017.1 MGP_C57BL6NJ_G0030151.1 mouse_genomes_project 5 95204545 95204949 + Alb protein_coding processed_transcript MGP_C57BL6NJ_T0073018.1 MGP_C57BL6NJ_G0030151.1 mouse_genomes_project 5 95204926 95217652 + Alb protein_coding processed_transcript MGP_C57BL6NJ_T0001901.1 MGP_C57BL6NJ_G0001794.1 mouse_genomes_project 5 119724915 119726216 + TEC TEC MGP_C57BL6NJ_T0001985.1 MGP_C57BL6NJ_G0001877.1 mouse_genomes_project 5 140240885 140242971 - TEC TEC MGP_C57BL6NJ_T0074028.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706858 121715918 + MGP_C57BL6NJ_P0074028 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0074029.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706875 121723253 + MGP_C57BL6NJ_P0074029 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0074030.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706883 121723360 + Mvk protein_coding retained_intron MGP_C57BL6NJ_T0074031.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706892 121715918 + MGP_C57BL6NJ_P0074031 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0074032.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706892 121718251 + MGP_C57BL6NJ_P0074032 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0074033.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121706895 121723367 + MGP_C57BL6NJ_P0074033 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0074034.1 MGP_C57BL6NJ_G0030369.1 mouse_genomes_project 5 121715182 121723348 + MGP_C57BL6NJ_P0074034 Mvk protein_coding protein_coding MGP_C57BL6NJ_T0076348.1 MGP_C57BL6NJ_G0030803.1 mouse_genomes_project 5 157282606 157283661 - MGP_C57BL6NJ_P0076348 protein_coding protein_coding MGP_C57BL6NJ_T0015451.1 MGP_C57BL6NJ_G0013496.1 mouse_genomes_project 5 93184983 93185104 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018676.1 MGP_C57BL6NJ_G0016011.1 mouse_genomes_project 5 160880348 160945072 + Gm20488 processed_transcript processed_transcript MGP_C57BL6NJ_T0073002.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94957078 95102959 - MGP_C57BL6NJ_P0073002 Ankrd17 protein_coding protein_coding MGP_C57BL6NJ_T0073003.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94957731 94962377 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073004.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94958209 95102946 - MGP_C57BL6NJ_P0073004 Ankrd17 protein_coding protein_coding MGP_C57BL6NJ_T0073005.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94958377 95102650 - MGP_C57BL6NJ_P0073005 Ankrd17 protein_coding protein_coding MGP_C57BL6NJ_T0073006.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94958653 95075325 - MGP_C57BL6NJ_P0073006 Ankrd17 protein_coding protein_coding MGP_C57BL6NJ_T0073007.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94966233 94969508 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073008.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94985868 95037313 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073009.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94986512 94996514 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073010.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 94993186 94999884 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073011.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 95000419 95008700 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073012.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 95009544 95011722 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073013.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 95025499 95028341 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0073014.1 MGP_C57BL6NJ_G0030149.1 mouse_genomes_project 5 95100791 95102650 - Ankrd17 protein_coding retained_intron MGP_C57BL6NJ_T0002030.1 MGP_C57BL6NJ_G0001921.1 mouse_genomes_project 5 150768782 150771007 - TEC TEC MGP_C57BL6NJ_T0015599.1 MGP_C57BL6NJ_G0013644.1 mouse_genomes_project 5 157063046 157063864 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0073191.1 MGP_C57BL6NJ_G0030192.1 mouse_genomes_project 5 98606986 98609070 - MGP_C57BL6NJ_P0073191 protein_coding protein_coding MGP_C57BL6NJ_T0015583.1 MGP_C57BL6NJ_G0013628.1 mouse_genomes_project 5 153544299 153544883 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001982.1 MGP_C57BL6NJ_G0001874.1 mouse_genomes_project 5 139494472 139497374 + TEC TEC MGP_C57BL6NJ_T0015324.1 MGP_C57BL6NJ_G0013369.1 mouse_genomes_project 5 33116202 33117957 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005005.1 MGP_C57BL6NJ_G0004301.1 mouse_genomes_project 5 137888503 137896811 + Gm42875 antisense antisense MGP_C57BL6NJ_T0011866.1 MGP_C57BL6NJ_G0009951.1 mouse_genomes_project 5 116370614 116370699 + Gm28000 misc_RNA misc_RNA MGP_C57BL6NJ_T0015352.1 MGP_C57BL6NJ_G0013397.1 mouse_genomes_project 5 48553350 48554155 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005055.1 MGP_C57BL6NJ_G0004337.1 mouse_genomes_project 5 160937784 160939521 - Gm43151 antisense antisense MGP_C57BL6NJ_T0008296.1 MGP_C57BL6NJ_G0006758.1 mouse_genomes_project 5 43677165 43688854 - Gm43700 lincRNA lincRNA MGP_C57BL6NJ_T0004953.1 MGP_C57BL6NJ_G0004266.1 mouse_genomes_project 5 123513787 123520577 + Gm14508 antisense antisense MGP_C57BL6NJ_T0075872.1 MGP_C57BL6NJ_G0030698.1 mouse_genomes_project 5 148497289 148498295 + MGP_C57BL6NJ_P0075872 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0076147.1 MGP_C57BL6NJ_G0030758.1 mouse_genomes_project 5 154040956 154045558 - MGP_C57BL6NJ_P0076147 Zfp853 protein_coding protein_coding MGP_C57BL6NJ_T0001955.1 MGP_C57BL6NJ_G0001848.1 mouse_genomes_project 5 132053562 132054432 + TEC TEC MGP_C57BL6NJ_T0074326.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125950741 126006945 - MGP_C57BL6NJ_P0074326 Rnft2 protein_coding protein_coding MGP_C57BL6NJ_T0074327.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125950747 126007200 - MGP_C57BL6NJ_P0074327 Rnft2 protein_coding protein_coding MGP_C57BL6NJ_T0074328.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125953504 125991353 - Rnft2 protein_coding retained_intron MGP_C57BL6NJ_T0074329.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125953986 125963204 - MGP_C57BL6NJ_P0074329 Rnft2 protein_coding protein_coding MGP_C57BL6NJ_T0074330.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125996239 126007078 - MGP_C57BL6NJ_P0074330 Rnft2 protein_coding protein_coding MGP_C57BL6NJ_T0074331.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125999010 126005005 - Rnft2 protein_coding retained_intron MGP_C57BL6NJ_T0074332.1 MGP_C57BL6NJ_G0030425.1 mouse_genomes_project 5 125999588 126007076 - MGP_C57BL6NJ_P0074332 Rnft2 protein_coding protein_coding MGP_C57BL6NJ_T0001811.1 MGP_C57BL6NJ_G0001705.1 mouse_genomes_project 5 71917685 71920076 - TEC TEC MGP_C57BL6NJ_T0001798.1 MGP_C57BL6NJ_G0001692.1 mouse_genomes_project 5 69497989 69500146 + TEC TEC MGP_C57BL6NJ_T0015528.1 MGP_C57BL6NJ_G0013573.1 mouse_genomes_project 5 122161461 122162068 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008261.1 MGP_C57BL6NJ_G0006737.1 mouse_genomes_project 5 31410077 31418331 - Gm43660 lincRNA lincRNA MGP_C57BL6NJ_T0008598.1 MGP_C57BL6NJ_G0006971.1 mouse_genomes_project 5 147525357 147526313 + 9130604C24Rik lincRNA lincRNA MGP_C57BL6NJ_T0073143.1 MGP_C57BL6NJ_G0030182.1 mouse_genomes_project 5 97346304 97415134 - MGP_C57BL6NJ_P0073143 Scarb2 protein_coding protein_coding MGP_C57BL6NJ_T0073144.1 MGP_C57BL6NJ_G0030182.1 mouse_genomes_project 5 97414297 97416330 - Scarb2 protein_coding retained_intron MGP_C57BL6NJ_T0008354.1 MGP_C57BL6NJ_G0006807.1 mouse_genomes_project 5 78927193 78936555 + Gm43101 lincRNA lincRNA MGP_C57BL6NJ_T0008355.1 MGP_C57BL6NJ_G0006807.1 mouse_genomes_project 5 78935418 78936556 + Gm43101 lincRNA lincRNA MGP_C57BL6NJ_T0004920.1 MGP_C57BL6NJ_G0004242.1 mouse_genomes_project 5 109438230 109458789 - Gm42620 antisense antisense MGP_C57BL6NJ_T0074213.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123108083 123204362 - MGP_C57BL6NJ_P0074213 Ccdc64 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0074214.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123108090 123109710 - Ccdc64 protein_coding retained_intron MGP_C57BL6NJ_T0074215.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123108090 123204493 - MGP_C57BL6NJ_P0074215 Ccdc64 protein_coding protein_coding MGP_C57BL6NJ_T0074216.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123108092 123112902 - MGP_C57BL6NJ_P0074216 Ccdc64 protein_coding protein_coding MGP_C57BL6NJ_T0074217.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123108095 123112897 - MGP_C57BL6NJ_P0074217 Ccdc64 protein_coding protein_coding MGP_C57BL6NJ_T0074218.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123109182 123112902 - MGP_C57BL6NJ_P0074218 Ccdc64 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074219.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123111734 123141826 - MGP_C57BL6NJ_P0074219 Ccdc64 protein_coding protein_coding MGP_C57BL6NJ_T0074220.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123131848 123142092 - Ccdc64 protein_coding retained_intron MGP_C57BL6NJ_T0074221.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123138809 123189431 - Ccdc64 protein_coding processed_transcript MGP_C57BL6NJ_T0074222.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123141746 123204239 - MGP_C57BL6NJ_P0074222 Ccdc64 protein_coding protein_coding MGP_C57BL6NJ_T0074223.1 MGP_C57BL6NJ_G0030406.1 mouse_genomes_project 5 123197335 123204300 - Ccdc64 protein_coding retained_intron MGP_C57BL6NJ_T0004869.1 MGP_C57BL6NJ_G0004208.1 mouse_genomes_project 5 69977177 69987488 + Gm26756 antisense antisense MGP_C57BL6NJ_T0015609.1 MGP_C57BL6NJ_G0013654.1 mouse_genomes_project 5 159143722 159144216 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101746.1 MGP_C57BL6NJ_G0039792.1 mouse_genomes_project 5 87740957 87741089 - Gm25765 snoRNA snoRNA MGP_C57BL6NJ_T0015239.1 MGP_C57BL6NJ_G0013284.1 mouse_genomes_project 5 4820480 4821481 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002036.1 MGP_C57BL6NJ_G0001927.1 mouse_genomes_project 5 154161482 154163798 - TEC TEC MGP_C57BL6NJ_T0002004.1 MGP_C57BL6NJ_G0001896.1 mouse_genomes_project 5 141792594 141795942 - TEC TEC MGP_C57BL6NJ_T0015231.1 MGP_C57BL6NJ_G0013276.1 mouse_genomes_project 5 1085107 1086819 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008473.1 MGP_C57BL6NJ_G0006892.1 mouse_genomes_project 5 119199656 119208652 + Gm42491 lincRNA lincRNA MGP_C57BL6NJ_T0102272.1 MGP_C57BL6NJ_G0040257.1 mouse_genomes_project 5 77425992 77426449 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0071552.1 MGP_C57BL6NJ_G0029881.1 mouse_genomes_project 5 33728100 33732711 - MGP_C57BL6NJ_P0071552 Tmem129 protein_coding protein_coding MGP_C57BL6NJ_T0071553.1 MGP_C57BL6NJ_G0029881.1 mouse_genomes_project 5 33728107 33732783 - Tmem129 protein_coding retained_intron MGP_C57BL6NJ_T0071554.1 MGP_C57BL6NJ_G0029881.1 mouse_genomes_project 5 33730441 33732740 - Tmem129 protein_coding retained_intron MGP_C57BL6NJ_T0008646.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160873265 160906341 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0008647.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160873277 160889406 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0008648.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160879508 160906341 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0008649.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160880918 160887941 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0008650.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160880920 160899112 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0008651.1 MGP_C57BL6NJ_G0007012.1 mouse_genomes_project 5 160881135 160905231 + BC028471 lincRNA lincRNA MGP_C57BL6NJ_T0001652.1 MGP_C57BL6NJ_G0001548.1 mouse_genomes_project 5 37427625 37430502 + TEC TEC MGP_C57BL6NJ_T0008215.1 MGP_C57BL6NJ_G0006708.1 mouse_genomes_project 5 5116991 5397578 - lincRNA lincRNA MGP_C57BL6NJ_T0015562.1 MGP_C57BL6NJ_G0013607.1 mouse_genomes_project 5 147196245 147200547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0072058.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46289329 46308608 + MGP_C57BL6NJ_P0072058 Lap3 protein_coding protein_coding MGP_C57BL6NJ_T0072059.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46289459 46296654 + Lap3 protein_coding retained_intron MGP_C57BL6NJ_T0072060.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46289481 46299293 + MGP_C57BL6NJ_P0072060 Lap3 protein_coding protein_coding MGP_C57BL6NJ_T0072061.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46294185 46300738 + Lap3 protein_coding retained_intron MGP_C57BL6NJ_T0072062.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46296247 46300709 + Lap3 protein_coding retained_intron MGP_C57BL6NJ_T0072063.1 MGP_C57BL6NJ_G0029964.1 mouse_genomes_project 5 46305125 46307290 + Lap3 protein_coding retained_intron MGP_C57BL6NJ_T0011874.1 MGP_C57BL6NJ_G0009959.1 mouse_genomes_project 5 133017511 133017775 + Gm23171 misc_RNA misc_RNA MGP_C57BL6NJ_T0072348.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68136141 68210891 + MGP_C57BL6NJ_P0072348 N4bp2 protein_coding protein_coding MGP_C57BL6NJ_T0072349.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68141609 68164551 + N4bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0072350.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68141609 68152915 + N4bp2 protein_coding retained_intron MGP_C57BL6NJ_T0072351.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68141750 68207433 + MGP_C57BL6NJ_P0072351 N4bp2 protein_coding protein_coding MGP_C57BL6NJ_T0072352.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68141750 68198039 + MGP_C57BL6NJ_P0072352 N4bp2 protein_coding protein_coding MGP_C57BL6NJ_T0072353.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68161239 68163393 + N4bp2 protein_coding retained_intron MGP_C57BL6NJ_T0072354.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68181182 68184310 + N4bp2 protein_coding retained_intron MGP_C57BL6NJ_T0072355.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68189833 68195161 + N4bp2 protein_coding retained_intron MGP_C57BL6NJ_T0072356.1 MGP_C57BL6NJ_G0030014.1 mouse_genomes_project 5 68206024 68207657 + N4bp2 protein_coding retained_intron MGP_C57BL6NJ_T0008604.1 MGP_C57BL6NJ_G0006977.1 mouse_genomes_project 5 150286209 150294176 + Gm42423 lincRNA lincRNA MGP_C57BL6NJ_T0015294.1 MGP_C57BL6NJ_G0013339.1 mouse_genomes_project 5 24704448 24704725 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0071423.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31445998 31503576 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071424.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31447796 31471393 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071425.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462679 31471393 + MGP_C57BL6NJ_P0071425 Mrpl33 protein_coding protein_coding MGP_C57BL6NJ_T0071426.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462696 31490507 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071427.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462712 31503576 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071428.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462725 31513047 + MGP_C57BL6NJ_P0071428 Mrpl33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0071429.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462753 31471391 + Mrpl33 protein_coding retained_intron MGP_C57BL6NJ_T0071430.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462757 31471386 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071431.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31462892 31471321 + Mrpl33 protein_coding retained_intron MGP_C57BL6NJ_T0071434.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31503339 31506845 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0071435.1 MGP_C57BL6NJ_G0029860.1 mouse_genomes_project 5 31504210 31512094 + Mrpl33 protein_coding processed_transcript MGP_C57BL6NJ_T0075954.1 MGP_C57BL6NJ_G0030713.1 mouse_genomes_project 5 149654056 149771647 - MGP_C57BL6NJ_P0075954 3110082I17Rik protein_coding protein_coding MGP_C57BL6NJ_T0075955.1 MGP_C57BL6NJ_G0030713.1 mouse_genomes_project 5 149654056 149771672 - MGP_C57BL6NJ_P0075955 3110082I17Rik protein_coding protein_coding MGP_C57BL6NJ_T0075956.1 MGP_C57BL6NJ_G0030713.1 mouse_genomes_project 5 149659958 149771656 - 3110082I17Rik protein_coding retained_intron MGP_C57BL6NJ_T0075966.1 MGP_C57BL6NJ_G0030713.1 mouse_genomes_project 5 149710769 149766673 - 3110082I17Rik protein_coding processed_transcript MGP_C57BL6NJ_T0074475.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776263 129801674 - MGP_C57BL6NJ_P0074475 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074476.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776273 129800969 - MGP_C57BL6NJ_P0074476 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074477.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776277 129778479 - Mapkapk5 protein_coding retained_intron MGP_C57BL6NJ_T0074478.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776277 129777058 - Mapkapk5 protein_coding retained_intron MGP_C57BL6NJ_T0074479.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776277 129778412 - MGP_C57BL6NJ_P0074479 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074480.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776281 129793483 - Mapkapk5 protein_coding processed_transcript MGP_C57BL6NJ_T0074481.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776370 129800969 - MGP_C57BL6NJ_P0074481 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074482.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776370 129800969 - MGP_C57BL6NJ_P0074482 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074483.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129776983 129800969 - Mapkapk5 protein_coding processed_transcript MGP_C57BL6NJ_T0074484.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129777779 129787378 - Mapkapk5 protein_coding retained_intron MGP_C57BL6NJ_T0074485.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129788919 129791613 - MGP_C57BL6NJ_P0074485 Mapkapk5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0074486.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129789114 129801000 - MGP_C57BL6NJ_P0074486 Mapkapk5 protein_coding protein_coding MGP_C57BL6NJ_T0074487.1 MGP_C57BL6NJ_G0030461.1 mouse_genomes_project 5 129790203 129792946 - Mapkapk5 protein_coding processed_transcript MGP_C57BL6NJ_T0100482.1 MGP_C57BL6NJ_G0038528.1 mouse_genomes_project 5 122936514 122936655 + Gm24265 snRNA snRNA MGP_C57BL6NJ_T0075165.1 MGP_C57BL6NJ_G0030570.1 mouse_genomes_project 5 139270105 139317320 + MGP_C57BL6NJ_P0075165 Crcp protein_coding protein_coding MGP_C57BL6NJ_T0075166.1 MGP_C57BL6NJ_G0030570.1 mouse_genomes_project 5 139270122 139317363 + Crcp protein_coding processed_transcript MGP_C57BL6NJ_T0075167.1 MGP_C57BL6NJ_G0030570.1 mouse_genomes_project 5 139270137 139317181 + Crcp protein_coding processed_transcript MGP_C57BL6NJ_T0075168.1 MGP_C57BL6NJ_G0030570.1 mouse_genomes_project 5 139270194 139317103 + MGP_C57BL6NJ_P0075168 Crcp protein_coding protein_coding MGP_C57BL6NJ_T0075169.1 MGP_C57BL6NJ_G0030570.1 mouse_genomes_project 5 139299500 139317659 + Crcp protein_coding processed_transcript MGP_C57BL6NJ_T0072414.1 MGP_C57BL6NJ_G0030021.1 mouse_genomes_project 5 69164911 69176040 + MGP_C57BL6NJ_P0072414 Uchl1 protein_coding protein_coding MGP_C57BL6NJ_T0072415.1 MGP_C57BL6NJ_G0030021.1 mouse_genomes_project 5 69165062 69165666 + Uchl1 protein_coding retained_intron MGP_C57BL6NJ_T0072416.1 MGP_C57BL6NJ_G0030021.1 mouse_genomes_project 5 69165712 69176035 + Uchl1 protein_coding retained_intron MGP_C57BL6NJ_T0072417.1 MGP_C57BL6NJ_G0030021.1 mouse_genomes_project 5 69172504 69175744 + Uchl1 protein_coding retained_intron MGP_C57BL6NJ_T0100431.1 MGP_C57BL6NJ_G0038477.1 mouse_genomes_project 5 29073530 29073637 - Gm24538 snRNA snRNA MGP_C57BL6NJ_T0005146.1 MGP_C57BL6NJ_G0004407.1 mouse_genomes_project 6 85265679 85267808 - Gm15864 antisense antisense MGP_C57BL6NJ_T0079983.1 MGP_C57BL6NJ_G0031593.1 mouse_genomes_project 6 121437372 121470333 + MGP_C57BL6NJ_P0079983 Cand2 protein_coding protein_coding MGP_C57BL6NJ_T0077807.1 MGP_C57BL6NJ_G0031123.1 mouse_genomes_project 6 47800341 47832466 + MGP_C57BL6NJ_P0077807 Zfp282 protein_coding protein_coding MGP_C57BL6NJ_T0077808.1 MGP_C57BL6NJ_G0031123.1 mouse_genomes_project 6 47800793 47817486 + Zfp282 protein_coding retained_intron MGP_C57BL6NJ_T0078186.1 MGP_C57BL6NJ_G0031213.1 mouse_genomes_project 6 56693608 56710632 + MGP_C57BL6NJ_P0078186 Ppp1r17 protein_coding protein_coding MGP_C57BL6NJ_T0078115.1 MGP_C57BL6NJ_G0031195.1 mouse_genomes_project 6 54869577 54871651 + Prr15 protein_coding retained_intron MGP_C57BL6NJ_T0078116.1 MGP_C57BL6NJ_G0031195.1 mouse_genomes_project 6 54870625 54873926 + MGP_C57BL6NJ_P0078116 Prr15 protein_coding protein_coding MGP_C57BL6NJ_T0015639.1 MGP_C57BL6NJ_G0013684.1 mouse_genomes_project 6 4876832 4877220 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016046.1 MGP_C57BL6NJ_G0014091.1 mouse_genomes_project 6 138416233 138416339 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015664.1 MGP_C57BL6NJ_G0013709.1 mouse_genomes_project 6 15933224 15934016 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080585.1 MGP_C57BL6NJ_G0031709.1 mouse_genomes_project 6 131555639 131579161 - MGP_C57BL6NJ_P0080585 Cd4 protein_coding protein_coding MGP_C57BL6NJ_T0080586.1 MGP_C57BL6NJ_G0031709.1 mouse_genomes_project 6 131557568 131561213 - Cd4 protein_coding processed_transcript MGP_C57BL6NJ_T0080587.1 MGP_C57BL6NJ_G0031709.1 mouse_genomes_project 6 131557668 131561430 - Cd4 protein_coding processed_transcript MGP_C57BL6NJ_T0080588.1 MGP_C57BL6NJ_G0031709.1 mouse_genomes_project 6 131558273 131579139 - Cd4 protein_coding retained_intron MGP_C57BL6NJ_T0080589.1 MGP_C57BL6NJ_G0031709.1 mouse_genomes_project 6 131569680 131579140 - Cd4 protein_coding retained_intron MGP_C57BL6NJ_T0015759.1 MGP_C57BL6NJ_G0013804.1 mouse_genomes_project 6 50854433 50855144 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015646.1 MGP_C57BL6NJ_G0013691.1 mouse_genomes_project 6 7629660 7630285 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000213.1 MGP_C57BL6NJ_G0000158.1 mouse_genomes_project 6 69831484 69831958 + MGP_C57BL6NJ_P0000213 Igkv9-120 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002232.1 MGP_C57BL6NJ_G0002123.1 mouse_genomes_project 6 99003305 99004310 + TEC TEC MGP_C57BL6NJ_T0081060.1 MGP_C57BL6NJ_G0031847.1 mouse_genomes_project 6 142645777 142676566 - MGP_C57BL6NJ_P0081060 Mansc1 protein_coding protein_coding MGP_C57BL6NJ_T0100522.1 MGP_C57BL6NJ_G0038568.1 mouse_genomes_project 6 48309560 48309760 + Gm22122 snRNA snRNA MGP_C57BL6NJ_T0015766.1 MGP_C57BL6NJ_G0013811.1 mouse_genomes_project 6 53281716 53282309 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011030.1 MGP_C57BL6NJ_G0009115.1 mouse_genomes_project 6 85094951 85095025 - Mir7232 miRNA miRNA MGP_C57BL6NJ_T0000456.1 MGP_C57BL6NJ_G0000375.1 mouse_genomes_project 6 72152560 72152870 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0080724.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132319498 132365142 + MGP_C57BL6NJ_P0080724 Vwf protein_coding protein_coding MGP_C57BL6NJ_T0080725.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132325672 132465263 + MGP_C57BL6NJ_P0080725 Vwf protein_coding protein_coding MGP_C57BL6NJ_T0080726.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132325687 132377706 + Vwf protein_coding retained_intron MGP_C57BL6NJ_T0080727.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132325687 132365439 + MGP_C57BL6NJ_P0080727 Vwf protein_coding protein_coding MGP_C57BL6NJ_T0080728.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132338955 132351494 + Vwf protein_coding processed_transcript MGP_C57BL6NJ_T0080729.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132376479 132419983 + Vwf protein_coding processed_transcript MGP_C57BL6NJ_T0080730.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132423397 132439026 + Vwf protein_coding retained_intron MGP_C57BL6NJ_T0080731.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132426327 132465256 + MGP_C57BL6NJ_P0080731 Vwf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080732.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132431989 132433686 + Vwf protein_coding retained_intron MGP_C57BL6NJ_T0080733.1 MGP_C57BL6NJ_G0031734.1 mouse_genomes_project 6 132464320 132465219 + Vwf protein_coding processed_transcript MGP_C57BL6NJ_T0078531.1 MGP_C57BL6NJ_G0031311.1 mouse_genomes_project 6 74816765 74819696 + MGP_C57BL6NJ_P0078531 Tmem150a protein_coding protein_coding MGP_C57BL6NJ_T0078532.1 MGP_C57BL6NJ_G0031311.1 mouse_genomes_project 6 74817423 74820596 + Tmem150a protein_coding processed_transcript MGP_C57BL6NJ_T0078533.1 MGP_C57BL6NJ_G0031311.1 mouse_genomes_project 6 74817520 74820047 + MGP_C57BL6NJ_P0078533 Tmem150a protein_coding protein_coding MGP_C57BL6NJ_T0078534.1 MGP_C57BL6NJ_G0031311.1 mouse_genomes_project 6 74817542 74820542 + MGP_C57BL6NJ_P0078534 Tmem150a protein_coding protein_coding MGP_C57BL6NJ_T0015959.1 MGP_C57BL6NJ_G0014004.1 mouse_genomes_project 6 119176847 119177249 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005276.1 MGP_C57BL6NJ_G0004496.1 mouse_genomes_project 6 149986157 149989111 - Gm28523 antisense antisense MGP_C57BL6NJ_T0078604.1 MGP_C57BL6NJ_G0031323.1 mouse_genomes_project 6 75350399 75418310 - MGP_C57BL6NJ_P0078604 Kcmf1 protein_coding protein_coding MGP_C57BL6NJ_T0078605.1 MGP_C57BL6NJ_G0031323.1 mouse_genomes_project 6 75350515 75418384 - MGP_C57BL6NJ_P0078605 Kcmf1 protein_coding protein_coding MGP_C57BL6NJ_T0078606.1 MGP_C57BL6NJ_G0031323.1 mouse_genomes_project 6 75353900 75356944 - Kcmf1 protein_coding retained_intron MGP_C57BL6NJ_T0078607.1 MGP_C57BL6NJ_G0031323.1 mouse_genomes_project 6 75355766 75367777 - Kcmf1 protein_coding processed_transcript MGP_C57BL6NJ_T0002217.1 MGP_C57BL6NJ_G0002108.1 mouse_genomes_project 6 94470818 94471331 + TEC TEC MGP_C57BL6NJ_T0103308.1 MGP_C57BL6NJ_G0041101.1 mouse_genomes_project 6 140938281 140939683 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008797.1 MGP_C57BL6NJ_G0007110.1 mouse_genomes_project 6 61687612 61692024 + Gm35386 lincRNA lincRNA MGP_C57BL6NJ_T0100536.1 MGP_C57BL6NJ_G0038582.1 mouse_genomes_project 6 100743614 100743711 - Gm22971 snRNA snRNA MGP_C57BL6NJ_T0101801.1 MGP_C57BL6NJ_G0039847.1 mouse_genomes_project 6 69621922 69622062 - Gm25910 snoRNA snoRNA MGP_C57BL6NJ_T0005119.1 MGP_C57BL6NJ_G0004386.1 mouse_genomes_project 6 52557378 52566276 + Gm29430 antisense antisense MGP_C57BL6NJ_T0005120.1 MGP_C57BL6NJ_G0004386.1 mouse_genomes_project 6 52560093 52566203 + Gm29430 antisense antisense MGP_C57BL6NJ_T0079297.1 MGP_C57BL6NJ_G0031454.1 mouse_genomes_project 6 92785512 92956163 + MGP_C57BL6NJ_P0079297 protein_coding protein_coding MGP_C57BL6NJ_T0079298.1 MGP_C57BL6NJ_G0031454.1 mouse_genomes_project 6 92940152 92953970 + protein_coding lincRNA MGP_C57BL6NJ_T0079299.1 MGP_C57BL6NJ_G0031454.1 mouse_genomes_project 6 92940152 92956164 + protein_coding lincRNA MGP_C57BL6NJ_T0079300.1 MGP_C57BL6NJ_G0031454.1 mouse_genomes_project 6 92946027 92954257 + protein_coding lincRNA MGP_C57BL6NJ_T0079434.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95919264 95926199 + Ccdc174 protein_coding retained_intron MGP_C57BL6NJ_T0079435.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95919264 95941550 + MGP_C57BL6NJ_P0079435 Ccdc174 protein_coding protein_coding MGP_C57BL6NJ_T0079436.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95919264 95941550 + MGP_C57BL6NJ_P0079436 Ccdc174 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079437.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95919283 95921723 + Ccdc174 protein_coding retained_intron MGP_C57BL6NJ_T0079438.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95919286 95929519 + Ccdc174 protein_coding retained_intron MGP_C57BL6NJ_T0079439.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95933995 95937000 + Ccdc174 protein_coding retained_intron MGP_C57BL6NJ_T0079440.1 MGP_C57BL6NJ_G0031491.1 mouse_genomes_project 6 95934452 95937046 + Ccdc174 protein_coding retained_intron MGP_C57BL6NJ_T0079643.1 MGP_C57BL6NJ_G0031533.1 mouse_genomes_project 6 111783833 111823803 - MGP_C57BL6NJ_P0079643 Il5ra protein_coding protein_coding MGP_C57BL6NJ_T0079644.1 MGP_C57BL6NJ_G0031533.1 mouse_genomes_project 6 111784082 111823714 - MGP_C57BL6NJ_P0079644 Il5ra protein_coding protein_coding MGP_C57BL6NJ_T0079645.1 MGP_C57BL6NJ_G0031533.1 mouse_genomes_project 6 111785451 111819875 - MGP_C57BL6NJ_P0079645 Il5ra protein_coding protein_coding MGP_C57BL6NJ_T0015747.1 MGP_C57BL6NJ_G0013792.1 mouse_genomes_project 6 49092808 49093898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018746.1 MGP_C57BL6NJ_G0016030.1 mouse_genomes_project 6 68607235 68656255 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0018747.1 MGP_C57BL6NJ_G0016030.1 mouse_genomes_project 6 68607241 68639362 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0018748.1 MGP_C57BL6NJ_G0016030.1 mouse_genomes_project 6 68607291 68655740 + E230016M11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018749.1 MGP_C57BL6NJ_G0016030.1 mouse_genomes_project 6 68652360 68655698 + E230016M11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0008972.1 MGP_C57BL6NJ_G0007246.1 mouse_genomes_project 6 158442824 158459459 - 1700003I16Rik lincRNA lincRNA MGP_C57BL6NJ_T0016086.1 MGP_C57BL6NJ_G0014131.1 mouse_genomes_project 6 149496415 149496621 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008834.1 MGP_C57BL6NJ_G0007141.1 mouse_genomes_project 6 90155162 90160006 - 2310040G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008835.1 MGP_C57BL6NJ_G0007141.1 mouse_genomes_project 6 90155162 90160029 - 2310040G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0078265.1 MGP_C57BL6NJ_G0031246.1 mouse_genomes_project 6 58763960 58764957 - MGP_C57BL6NJ_P0078265 Vmn1r23 protein_coding protein_coding MGP_C57BL6NJ_T0002190.1 MGP_C57BL6NJ_G0002081.1 mouse_genomes_project 6 90350829 90353193 - TEC TEC MGP_C57BL6NJ_T0103235.1 MGP_C57BL6NJ_G0041029.1 mouse_genomes_project 6 40489243 40489885 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079984.1 MGP_C57BL6NJ_G0031594.1 mouse_genomes_project 6 121470280 121473523 - MGP_C57BL6NJ_P0079984 Rpl32 protein_coding protein_coding MGP_C57BL6NJ_T0079985.1 MGP_C57BL6NJ_G0031594.1 mouse_genomes_project 6 121470287 121473124 - MGP_C57BL6NJ_P0079985 Rpl32 protein_coding protein_coding MGP_C57BL6NJ_T0016035.1 MGP_C57BL6NJ_G0014080.1 mouse_genomes_project 6 137128739 137130288 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081077.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943003 142971820 - MGP_C57BL6NJ_P0081077 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081078.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943003 142971710 - MGP_C57BL6NJ_P0081078 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081079.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943018 142971753 - MGP_C57BL6NJ_P0081079 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081080.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943067 142961739 - MGP_C57BL6NJ_P0081080 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081081.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943072 142971758 - MGP_C57BL6NJ_P0081081 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081082.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142943947 142971720 - MGP_C57BL6NJ_P0081082 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081083.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142944118 142971710 - MGP_C57BL6NJ_P0081083 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081084.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142944159 142961675 - MGP_C57BL6NJ_P0081084 Gpr19 protein_coding protein_coding MGP_C57BL6NJ_T0081085.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142951161 142971782 - Gpr19 protein_coding processed_transcript MGP_C57BL6NJ_T0081086.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142960797 142970979 - Gpr19 protein_coding processed_transcript MGP_C57BL6NJ_T0081087.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142961557 142972473 - Gpr19 protein_coding processed_transcript MGP_C57BL6NJ_T0081088.1 MGP_C57BL6NJ_G0031851.1 mouse_genomes_project 6 142970592 142971820 - Gpr19 protein_coding processed_transcript MGP_C57BL6NJ_T0098886.1 MGP_C57BL6NJ_G0036950.1 mouse_genomes_project 6 70666159 70666441 - pseudogene pseudogene MGP_C57BL6NJ_T0002139.1 MGP_C57BL6NJ_G0002030.1 mouse_genomes_project 6 73203451 73205899 - TEC TEC MGP_C57BL6NJ_T0078981.1 MGP_C57BL6NJ_G0031402.1 mouse_genomes_project 6 89523577 89531365 - MGP_C57BL6NJ_P0078981 Nat8f1 protein_coding protein_coding MGP_C57BL6NJ_T0078982.1 MGP_C57BL6NJ_G0031402.1 mouse_genomes_project 6 89523585 89531344 - Nat8f1 protein_coding processed_transcript MGP_C57BL6NJ_T0078983.1 MGP_C57BL6NJ_G0031402.1 mouse_genomes_project 6 89524053 89531282 - MGP_C57BL6NJ_P0078983 Nat8f1 protein_coding protein_coding MGP_C57BL6NJ_T0002183.1 MGP_C57BL6NJ_G0002074.1 mouse_genomes_project 6 89198508 89200794 + TEC TEC MGP_C57BL6NJ_T0079349.1 MGP_C57BL6NJ_G0031477.1 mouse_genomes_project 6 94420068 94432732 + MGP_C57BL6NJ_P0079349 Klf15 protein_coding protein_coding MGP_C57BL6NJ_T0079350.1 MGP_C57BL6NJ_G0031477.1 mouse_genomes_project 6 94420166 94432732 + MGP_C57BL6NJ_P0079350 Klf15 protein_coding protein_coding MGP_C57BL6NJ_T0079351.1 MGP_C57BL6NJ_G0031477.1 mouse_genomes_project 6 94422796 94432729 + MGP_C57BL6NJ_P0079351 Klf15 protein_coding protein_coding MGP_C57BL6NJ_T0079352.1 MGP_C57BL6NJ_G0031477.1 mouse_genomes_project 6 94423892 94432729 + MGP_C57BL6NJ_P0079352 Klf15 protein_coding protein_coding MGP_C57BL6NJ_T0079353.1 MGP_C57BL6NJ_G0031477.1 mouse_genomes_project 6 94424610 94432715 + MGP_C57BL6NJ_P0079353 Klf15 protein_coding protein_coding MGP_C57BL6NJ_T0077669.1 MGP_C57BL6NJ_G0031078.1 mouse_genomes_project 6 41665843 41666803 + MGP_C57BL6NJ_P0077669 Tas2r139 protein_coding protein_coding MGP_C57BL6NJ_T0011889.1 MGP_C57BL6NJ_G0009974.1 mouse_genomes_project 6 15419456 15419633 + Gm27365 misc_RNA misc_RNA MGP_C57BL6NJ_T0011887.1 MGP_C57BL6NJ_G0009972.1 mouse_genomes_project 6 15415750 15415859 + Gm27762 misc_RNA misc_RNA MGP_C57BL6NJ_T0002320.1 MGP_C57BL6NJ_G0002210.1 mouse_genomes_project 6 154949650 154951526 + TEC TEC MGP_C57BL6NJ_T0000285.1 MGP_C57BL6NJ_G0000212.1 mouse_genomes_project 6 72605917 72606484 - MGP_C57BL6NJ_P0000285 Igkv8-16 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0103303.1 MGP_C57BL6NJ_G0041096.1 mouse_genomes_project 6 140613258 140614243 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005796.1 MGP_C57BL6NJ_G0004876.1 mouse_genomes_project 6 144809950 144814006 - Gm44140 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0101826.1 MGP_C57BL6NJ_G0039872.1 mouse_genomes_project 6 129995772 129995904 + Gm25065 snoRNA snoRNA MGP_C57BL6NJ_T0008697.1 MGP_C57BL6NJ_G0007042.1 mouse_genomes_project 6 14740548 14746739 - Gm15473 lincRNA lincRNA MGP_C57BL6NJ_T0005793.1 MGP_C57BL6NJ_G0004874.1 mouse_genomes_project 6 121331332 121333145 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005794.1 MGP_C57BL6NJ_G0004874.1 mouse_genomes_project 6 121331359 121332501 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0011909.1 MGP_C57BL6NJ_G0009994.1 mouse_genomes_project 6 52624184 52624275 + Gm27695 misc_RNA misc_RNA MGP_C57BL6NJ_T0002214.1 MGP_C57BL6NJ_G0002105.1 mouse_genomes_project 6 93235686 93237110 + TEC TEC MGP_C57BL6NJ_T0076957.1 MGP_C57BL6NJ_G0030920.1 mouse_genomes_project 6 20385801 20391154 + MGP_C57BL6NJ_P0076957 Wnt16 protein_coding protein_coding MGP_C57BL6NJ_T0076958.1 MGP_C57BL6NJ_G0030920.1 mouse_genomes_project 6 20385804 20396098 + MGP_C57BL6NJ_P0076958 Wnt16 protein_coding protein_coding MGP_C57BL6NJ_T0076959.1 MGP_C57BL6NJ_G0030920.1 mouse_genomes_project 6 20385862 20392160 + MGP_C57BL6NJ_P0076959 Wnt16 protein_coding protein_coding MGP_C57BL6NJ_T0076960.1 MGP_C57BL6NJ_G0030920.1 mouse_genomes_project 6 20386435 20395403 + MGP_C57BL6NJ_P0076960 Wnt16 protein_coding protein_coding MGP_C57BL6NJ_T0076796.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573294 10580243 + MGP_C57BL6NJ_P0076796 Tmem106b protein_coding protein_coding MGP_C57BL6NJ_T0076797.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573351 10575489 + MGP_C57BL6NJ_P0076797 Tmem106b protein_coding protein_coding MGP_C57BL6NJ_T0076798.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573374 10595735 + MGP_C57BL6NJ_P0076798 Tmem106b protein_coding protein_coding MGP_C57BL6NJ_T0076799.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573386 10580534 + Tmem106b protein_coding retained_intron MGP_C57BL6NJ_T0076800.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573389 10581519 + Tmem106b protein_coding processed_transcript MGP_C57BL6NJ_T0076801.1 MGP_C57BL6NJ_G0030894.1 mouse_genomes_project 6 10573786 10586801 + MGP_C57BL6NJ_P0076801 Tmem106b protein_coding protein_coding MGP_C57BL6NJ_T0002195.1 MGP_C57BL6NJ_G0002086.1 mouse_genomes_project 6 90903355 90905421 - TEC TEC MGP_C57BL6NJ_T0081106.1 MGP_C57BL6NJ_G0031856.1 mouse_genomes_project 6 143227739 143241083 - MGP_C57BL6NJ_P0081106 Gprc5d protein_coding protein_coding MGP_C57BL6NJ_T0081107.1 MGP_C57BL6NJ_G0031856.1 mouse_genomes_project 6 143227739 143241046 - MGP_C57BL6NJ_P0081107 Gprc5d protein_coding protein_coding MGP_C57BL6NJ_T0103237.1 MGP_C57BL6NJ_G0041031.1 mouse_genomes_project 6 40992778 40993990 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008701.1 MGP_C57BL6NJ_G0007044.1 mouse_genomes_project 6 15044491 15045099 + Gm29591 lincRNA lincRNA MGP_C57BL6NJ_T0080839.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135438420 135448957 + MGP_C57BL6NJ_P0080839 protein_coding protein_coding MGP_C57BL6NJ_T0080840.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135438432 135448850 + MGP_C57BL6NJ_P0080840 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080841.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135439375 135449675 + MGP_C57BL6NJ_P0080841 protein_coding protein_coding MGP_C57BL6NJ_T0080842.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135439440 135449675 + MGP_C57BL6NJ_P0080842 protein_coding protein_coding MGP_C57BL6NJ_T0080843.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135439518 135449675 + protein_coding retained_intron MGP_C57BL6NJ_T0080844.1 MGP_C57BL6NJ_G0031762.1 mouse_genomes_project 6 135439763 135456956 + MGP_C57BL6NJ_P0080844 protein_coding non_stop_decay MGP_C57BL6NJ_T0015886.1 MGP_C57BL6NJ_G0013931.1 mouse_genomes_project 6 88593911 88594668 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079556.1 MGP_C57BL6NJ_G0031518.1 mouse_genomes_project 6 102643630 102760675 - MGP_C57BL6NJ_P0079556 Gm765 protein_coding protein_coding MGP_C57BL6NJ_T0079557.1 MGP_C57BL6NJ_G0031518.1 mouse_genomes_project 6 102759383 102760580 - Gm765 protein_coding retained_intron MGP_C57BL6NJ_T0008871.1 MGP_C57BL6NJ_G0007168.1 mouse_genomes_project 6 105104525 105105925 + Gm44107 lincRNA lincRNA MGP_C57BL6NJ_T0078586.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75048645 75082758 - MGP_C57BL6NJ_P0078586 Elmod3 protein_coding protein_coding MGP_C57BL6NJ_T0078587.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75048657 75082759 - MGP_C57BL6NJ_P0078587 Elmod3 protein_coding protein_coding MGP_C57BL6NJ_T0078588.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75051915 75082811 - MGP_C57BL6NJ_P0078588 Elmod3 protein_coding protein_coding MGP_C57BL6NJ_T0078589.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75053693 75082777 - MGP_C57BL6NJ_P0078589 Elmod3 protein_coding protein_coding MGP_C57BL6NJ_T0078590.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75068854 75079419 - Elmod3 protein_coding processed_transcript MGP_C57BL6NJ_T0078591.1 MGP_C57BL6NJ_G0031319.1 mouse_genomes_project 6 75072020 75082829 - MGP_C57BL6NJ_P0078591 Elmod3 protein_coding protein_coding MGP_C57BL6NJ_T0005271.1 MGP_C57BL6NJ_G0004493.1 mouse_genomes_project 6 146896493 146902352 + A830011K09Rik antisense antisense MGP_C57BL6NJ_T0005272.1 MGP_C57BL6NJ_G0004493.1 mouse_genomes_project 6 146896588 146901074 + A830011K09Rik antisense antisense MGP_C57BL6NJ_T0005273.1 MGP_C57BL6NJ_G0004493.1 mouse_genomes_project 6 146896659 146902973 + A830011K09Rik antisense antisense MGP_C57BL6NJ_T0080111.1 MGP_C57BL6NJ_G0031618.1 mouse_genomes_project 6 123725520 123754566 + MGP_C57BL6NJ_P0080111 protein_coding protein_coding MGP_C57BL6NJ_T0080112.1 MGP_C57BL6NJ_G0031618.1 mouse_genomes_project 6 123733898 123754515 + MGP_C57BL6NJ_P0080112 protein_coding protein_coding MGP_C57BL6NJ_T0080113.1 MGP_C57BL6NJ_G0031618.1 mouse_genomes_project 6 123733935 123754636 + MGP_C57BL6NJ_P0080113 protein_coding protein_coding MGP_C57BL6NJ_T0099501.1 MGP_C57BL6NJ_G0037554.1 mouse_genomes_project 6 119138401 119142454 + Gm44200 sense_intronic sense_intronic MGP_C57BL6NJ_T0000401.1 MGP_C57BL6NJ_G0000320.1 mouse_genomes_project 6 69837846 69838312 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0012117.1 MGP_C57BL6NJ_G0010165.1 mouse_genomes_project 6 42351302 42352238 + MGP_C57BL6NJ_P0012117 Olfr451-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0002184.1 MGP_C57BL6NJ_G0002075.1 mouse_genomes_project 6 89300187 89309259 + TEC TEC MGP_C57BL6NJ_T0002252.1 MGP_C57BL6NJ_G0002143.1 mouse_genomes_project 6 108430838 108432332 + TEC TEC MGP_C57BL6NJ_T0000400.1 MGP_C57BL6NJ_G0000319.1 mouse_genomes_project 6 69564337 69564804 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011898.1 MGP_C57BL6NJ_G0009983.1 mouse_genomes_project 6 29462567 29462666 + Gm27568 misc_RNA misc_RNA MGP_C57BL6NJ_T0079764.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814107 118836038 + MGP_C57BL6NJ_P0079764 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079765.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814136 118835883 + MGP_C57BL6NJ_P0079765 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079766.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814162 118836041 + MGP_C57BL6NJ_P0079766 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079767.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814162 118835902 + MGP_C57BL6NJ_P0079767 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079768.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814194 118836022 + MGP_C57BL6NJ_P0079768 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079769.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814283 118835804 + MGP_C57BL6NJ_P0079769 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079770.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814338 118836048 + MGP_C57BL6NJ_P0079770 Brpf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079771.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118814399 118835905 + MGP_C57BL6NJ_P0079771 Brpf1 protein_coding protein_coding MGP_C57BL6NJ_T0079772.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118827363 118828659 + Brpf1 protein_coding retained_intron MGP_C57BL6NJ_T0079773.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118830568 118833487 + Brpf1 protein_coding retained_intron MGP_C57BL6NJ_T0079774.1 MGP_C57BL6NJ_G0031555.1 mouse_genomes_project 6 118830683 118835883 + Brpf1 protein_coding retained_intron MGP_C57BL6NJ_T0005232.1 MGP_C57BL6NJ_G0004458.1 mouse_genomes_project 6 121786508 121808197 + Gm20404 antisense antisense MGP_C57BL6NJ_T0002226.1 MGP_C57BL6NJ_G0002117.1 mouse_genomes_project 6 95979552 95980814 - TEC TEC MGP_C57BL6NJ_T0008733.1 MGP_C57BL6NJ_G0007065.1 mouse_genomes_project 6 30480394 30484912 - Gm43293 lincRNA lincRNA MGP_C57BL6NJ_T0015715.1 MGP_C57BL6NJ_G0013760.1 mouse_genomes_project 6 39226644 39227728 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080415.1 MGP_C57BL6NJ_G0031671.1 mouse_genomes_project 6 129264816 129293724 + MGP_C57BL6NJ_P0080415 Foxj2 protein_coding protein_coding MGP_C57BL6NJ_T0080416.1 MGP_C57BL6NJ_G0031671.1 mouse_genomes_project 6 129265413 129293699 + MGP_C57BL6NJ_P0080416 Foxj2 protein_coding protein_coding MGP_C57BL6NJ_T0080417.1 MGP_C57BL6NJ_G0031671.1 mouse_genomes_project 6 129271584 129279857 + MGP_C57BL6NJ_P0080417 Foxj2 protein_coding protein_coding MGP_C57BL6NJ_T0077224.1 MGP_C57BL6NJ_G0030973.1 mouse_genomes_project 6 29088019 29145369 + MGP_C57BL6NJ_P0077224 Klhdc10 protein_coding protein_coding MGP_C57BL6NJ_T0077225.1 MGP_C57BL6NJ_G0030973.1 mouse_genomes_project 6 29088117 29145374 + MGP_C57BL6NJ_P0077225 Klhdc10 protein_coding protein_coding MGP_C57BL6NJ_T0077226.1 MGP_C57BL6NJ_G0030973.1 mouse_genomes_project 6 29088121 29140752 + MGP_C57BL6NJ_P0077226 Klhdc10 protein_coding protein_coding MGP_C57BL6NJ_T0077227.1 MGP_C57BL6NJ_G0030973.1 mouse_genomes_project 6 29104606 29137637 + MGP_C57BL6NJ_P0077227 Klhdc10 protein_coding protein_coding MGP_C57BL6NJ_T0077228.1 MGP_C57BL6NJ_G0030973.1 mouse_genomes_project 6 29133959 29141031 + Klhdc10 protein_coding retained_intron MGP_C57BL6NJ_T0079212.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92070024 92269379 - MGP_C57BL6NJ_P0079212 Eefsec protein_coding protein_coding MGP_C57BL6NJ_T0079213.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92070563 92269367 - MGP_C57BL6NJ_P0079213 Eefsec protein_coding protein_coding MGP_C57BL6NJ_T0079214.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92070963 92269354 - MGP_C57BL6NJ_P0079214 Eefsec protein_coding protein_coding MGP_C57BL6NJ_T0079215.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92094339 92269342 - MGP_C57BL6NJ_P0079215 Eefsec protein_coding protein_coding MGP_C57BL6NJ_T0079216.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92110608 92262681 - MGP_C57BL6NJ_P0079216 Eefsec protein_coding protein_coding MGP_C57BL6NJ_T0079217.1 MGP_C57BL6NJ_G0031445.1 mouse_genomes_project 6 92110791 92269324 - MGP_C57BL6NJ_P0079217 Eefsec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080876.1 MGP_C57BL6NJ_G0031769.1 mouse_genomes_project 6 135781565 135783531 - Klrb1 protein_coding processed_transcript MGP_C57BL6NJ_T0080877.1 MGP_C57BL6NJ_G0031769.1 mouse_genomes_project 6 135782171 135815472 - MGP_C57BL6NJ_P0080877 Klrb1 protein_coding protein_coding MGP_C57BL6NJ_T0015885.1 MGP_C57BL6NJ_G0013930.1 mouse_genomes_project 6 88588075 88588217 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015969.1 MGP_C57BL6NJ_G0014014.1 mouse_genomes_project 6 121891431 121893816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080455.1 MGP_C57BL6NJ_G0031686.1 mouse_genomes_project 6 130761122 130787701 - MGP_C57BL6NJ_P0080455 Vmn2r27 protein_coding protein_coding MGP_C57BL6NJ_T0080075.1 MGP_C57BL6NJ_G0031610.1 mouse_genomes_project 6 122304894 122307991 + MGP_C57BL6NJ_P0080075 Olfr214 protein_coding protein_coding MGP_C57BL6NJ_T0080076.1 MGP_C57BL6NJ_G0031610.1 mouse_genomes_project 6 122306983 122307991 + MGP_C57BL6NJ_P0080076 Olfr214 protein_coding protein_coding MGP_C57BL6NJ_T0079691.1 MGP_C57BL6NJ_G0031543.1 mouse_genomes_project 6 115988674 116986580 + MGP_C57BL6NJ_P0079691 Grm7 protein_coding protein_coding MGP_C57BL6NJ_T0079692.1 MGP_C57BL6NJ_G0031543.1 mouse_genomes_project 6 115988674 116913584 + MGP_C57BL6NJ_P0079692 Grm7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079693.1 MGP_C57BL6NJ_G0031543.1 mouse_genomes_project 6 115988675 116987743 + MGP_C57BL6NJ_P0079693 Grm7 protein_coding protein_coding MGP_C57BL6NJ_T0079694.1 MGP_C57BL6NJ_G0031543.1 mouse_genomes_project 6 116912208 116918293 + MGP_C57BL6NJ_P0079694 Grm7 protein_coding protein_coding MGP_C57BL6NJ_T0079695.1 MGP_C57BL6NJ_G0031543.1 mouse_genomes_project 6 116912237 116920644 + MGP_C57BL6NJ_P0079695 Grm7 protein_coding protein_coding MGP_C57BL6NJ_T0005145.1 MGP_C57BL6NJ_G0004406.1 mouse_genomes_project 6 82965868 83062859 - Gm4409 antisense antisense MGP_C57BL6NJ_T0015869.1 MGP_C57BL6NJ_G0013914.1 mouse_genomes_project 6 82021259 82021968 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015649.1 MGP_C57BL6NJ_G0013694.1 mouse_genomes_project 6 9537633 9537931 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079753.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789293 118812598 + Cpne9 protein_coding retained_intron MGP_C57BL6NJ_T0079754.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789293 118812540 + MGP_C57BL6NJ_P0079754 Cpne9 protein_coding protein_coding MGP_C57BL6NJ_T0079755.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789296 118811795 + MGP_C57BL6NJ_P0079755 Cpne9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079756.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789321 118790416 + Cpne9 protein_coding retained_intron MGP_C57BL6NJ_T0079757.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789322 118792255 + Cpne9 protein_coding retained_intron MGP_C57BL6NJ_T0079758.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789325 118790494 + Cpne9 protein_coding retained_intron MGP_C57BL6NJ_T0079759.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789350 118790956 + Cpne9 protein_coding processed_transcript MGP_C57BL6NJ_T0079760.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789351 118791411 + Cpne9 protein_coding processed_transcript MGP_C57BL6NJ_T0079761.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118789460 118811592 + MGP_C57BL6NJ_P0079761 Cpne9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079762.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118795478 118812542 + Cpne9 protein_coding retained_intron MGP_C57BL6NJ_T0079763.1 MGP_C57BL6NJ_G0031554.1 mouse_genomes_project 6 118801299 118808650 + Cpne9 protein_coding processed_transcript MGP_C57BL6NJ_T0101815.1 MGP_C57BL6NJ_G0039861.1 mouse_genomes_project 6 101500502 101500633 - Gm26175 snoRNA snoRNA MGP_C57BL6NJ_T0002109.1 MGP_C57BL6NJ_G0002000.1 mouse_genomes_project 6 45367479 45370708 + TEC TEC MGP_C57BL6NJ_T0080960.1 MGP_C57BL6NJ_G0031793.1 mouse_genomes_project 6 136826177 136864163 - MGP_C57BL6NJ_P0080960 protein_coding protein_coding MGP_C57BL6NJ_T0015694.1 MGP_C57BL6NJ_G0013739.1 mouse_genomes_project 6 28360090 28360455 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005082.1 MGP_C57BL6NJ_G0004357.1 mouse_genomes_project 6 29378433 29386748 + Gm13782 antisense antisense MGP_C57BL6NJ_T0018771.1 MGP_C57BL6NJ_G0016039.1 mouse_genomes_project 6 131743582 131755225 + Gm44597 processed_transcript retained_intron MGP_C57BL6NJ_T0018772.1 MGP_C57BL6NJ_G0016039.1 mouse_genomes_project 6 131743611 131755182 + Gm44597 processed_transcript retained_intron MGP_C57BL6NJ_T0011020.1 MGP_C57BL6NJ_G0009105.1 mouse_genomes_project 6 51951586 51951663 + Gm22914 miRNA miRNA MGP_C57BL6NJ_T0015844.1 MGP_C57BL6NJ_G0013889.1 mouse_genomes_project 6 72654564 72656461 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079534.1 MGP_C57BL6NJ_G0031514.1 mouse_genomes_project 6 101554692 101580865 + MGP_C57BL6NJ_P0079534 Arl6ip5 protein_coding protein_coding MGP_C57BL6NJ_T0008929.1 MGP_C57BL6NJ_G0007217.1 mouse_genomes_project 6 143010204 143046293 + Lockd lincRNA lincRNA MGP_C57BL6NJ_T0008930.1 MGP_C57BL6NJ_G0007217.1 mouse_genomes_project 6 143010210 143038558 + Lockd lincRNA lincRNA MGP_C57BL6NJ_T0008931.1 MGP_C57BL6NJ_G0007217.1 mouse_genomes_project 6 143010210 143038324 + Lockd lincRNA lincRNA MGP_C57BL6NJ_T0008932.1 MGP_C57BL6NJ_G0007217.1 mouse_genomes_project 6 143010245 143038556 + Lockd lincRNA lincRNA MGP_C57BL6NJ_T0008933.1 MGP_C57BL6NJ_G0007217.1 mouse_genomes_project 6 143010267 143038699 + Lockd lincRNA lincRNA MGP_C57BL6NJ_T0015823.1 MGP_C57BL6NJ_G0013868.1 mouse_genomes_project 6 68847444 68849659 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080799.1 MGP_C57BL6NJ_G0031750.1 mouse_genomes_project 6 134506289 134587065 + MGP_C57BL6NJ_P0080799 Cracr2a protein_coding protein_coding MGP_C57BL6NJ_T0080800.1 MGP_C57BL6NJ_G0031750.1 mouse_genomes_project 6 134522915 134586970 + MGP_C57BL6NJ_P0080800 Cracr2a protein_coding protein_coding MGP_C57BL6NJ_T0079979.1 MGP_C57BL6NJ_G0031592.1 mouse_genomes_project 6 121390841 121421050 - MGP_C57BL6NJ_P0079979 Tmem40 protein_coding protein_coding MGP_C57BL6NJ_T0079980.1 MGP_C57BL6NJ_G0031592.1 mouse_genomes_project 6 121390853 121396744 - Tmem40 protein_coding processed_transcript MGP_C57BL6NJ_T0079981.1 MGP_C57BL6NJ_G0031592.1 mouse_genomes_project 6 121391236 121408191 - MGP_C57BL6NJ_P0079981 Tmem40 protein_coding protein_coding MGP_C57BL6NJ_T0079982.1 MGP_C57BL6NJ_G0031592.1 mouse_genomes_project 6 121391243 121397086 - Tmem40 protein_coding retained_intron MGP_C57BL6NJ_T0080085.1 MGP_C57BL6NJ_G0031613.1 mouse_genomes_project 6 122410769 122412955 + MGP_C57BL6NJ_P0080085 8430408G22Rik protein_coding protein_coding MGP_C57BL6NJ_T0080086.1 MGP_C57BL6NJ_G0031613.1 mouse_genomes_project 6 122410788 122412955 + MGP_C57BL6NJ_P0080086 8430408G22Rik protein_coding protein_coding MGP_C57BL6NJ_T0080087.1 MGP_C57BL6NJ_G0031613.1 mouse_genomes_project 6 122410856 122412070 + MGP_C57BL6NJ_P0080087 8430408G22Rik protein_coding protein_coding MGP_C57BL6NJ_T0078749.1 MGP_C57BL6NJ_G0031358.1 mouse_genomes_project 6 86399698 86400598 + MGP_C57BL6NJ_P0078749 Mrpl53 protein_coding protein_coding MGP_C57BL6NJ_T0078750.1 MGP_C57BL6NJ_G0031358.1 mouse_genomes_project 6 86399778 86400598 + Mrpl53 protein_coding retained_intron MGP_C57BL6NJ_T0100524.1 MGP_C57BL6NJ_G0038570.1 mouse_genomes_project 6 64468372 64468478 - Gm22212 snRNA snRNA MGP_C57BL6NJ_T0002117.1 MGP_C57BL6NJ_G0002008.1 mouse_genomes_project 6 46303786 46306316 + TEC TEC MGP_C57BL6NJ_T0103239.1 MGP_C57BL6NJ_G0041033.1 mouse_genomes_project 6 41993643 41993785 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002047.1 MGP_C57BL6NJ_G0001938.1 mouse_genomes_project 6 1269811 1270536 - TEC TEC MGP_C57BL6NJ_T0008821.1 MGP_C57BL6NJ_G0007133.1 mouse_genomes_project 6 85201980 85210526 + lincRNA lincRNA MGP_C57BL6NJ_T0008823.1 MGP_C57BL6NJ_G0007133.1 mouse_genomes_project 6 85209573 85211146 + lincRNA lincRNA MGP_C57BL6NJ_T0016088.1 MGP_C57BL6NJ_G0014133.1 mouse_genomes_project 6 149869392 149869922 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011923.1 MGP_C57BL6NJ_G0010008.1 mouse_genomes_project 6 88557343 88557598 + Gm26353 misc_RNA misc_RNA MGP_C57BL6NJ_T0081610.1 MGP_C57BL6NJ_G0031950.1 mouse_genomes_project 6 158118844 158133067 - MGP_C57BL6NJ_P0081610 Fam60a protein_coding protein_coding MGP_C57BL6NJ_T0015924.1 MGP_C57BL6NJ_G0013969.1 mouse_genomes_project 6 105626592 105628246 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015779.1 MGP_C57BL6NJ_G0013824.1 mouse_genomes_project 6 59958121 59960555 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016018.1 MGP_C57BL6NJ_G0014063.1 mouse_genomes_project 6 134729753 134729979 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005237.1 MGP_C57BL6NJ_G0004463.1 mouse_genomes_project 6 127338806 127341012 - Gm15856 antisense antisense MGP_C57BL6NJ_T0077736.1 MGP_C57BL6NJ_G0031101.1 mouse_genomes_project 6 42383510 42387412 + MGP_C57BL6NJ_P0077736 Olfr449 protein_coding protein_coding MGP_C57BL6NJ_T0077737.1 MGP_C57BL6NJ_G0031101.1 mouse_genomes_project 6 42383510 42387598 + MGP_C57BL6NJ_P0077737 Olfr449 protein_coding protein_coding MGP_C57BL6NJ_T0077738.1 MGP_C57BL6NJ_G0031101.1 mouse_genomes_project 6 42383558 42387078 + MGP_C57BL6NJ_P0077738 Olfr449 protein_coding protein_coding MGP_C57BL6NJ_T0077739.1 MGP_C57BL6NJ_G0031101.1 mouse_genomes_project 6 42386989 42388026 + MGP_C57BL6NJ_P0077739 Olfr449 protein_coding protein_coding MGP_C57BL6NJ_T0015866.1 MGP_C57BL6NJ_G0013911.1 mouse_genomes_project 6 81141510 81146706 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102522.1 MGP_C57BL6NJ_G0040376.1 mouse_genomes_project 6 89388895 89399751 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0016080.1 MGP_C57BL6NJ_G0014125.1 mouse_genomes_project 6 147383520 147384124 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100516.1 MGP_C57BL6NJ_G0038562.1 mouse_genomes_project 6 34209921 34210077 + Gm23435 snRNA snRNA MGP_C57BL6NJ_T0016092.1 MGP_C57BL6NJ_G0014137.1 mouse_genomes_project 6 154358718 154359714 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079510.1 MGP_C57BL6NJ_G0031508.1 mouse_genomes_project 6 100363782 100961220 + MGP_C57BL6NJ_P0079510 Fam19a1 protein_coding protein_coding MGP_C57BL6NJ_T0079511.1 MGP_C57BL6NJ_G0031508.1 mouse_genomes_project 6 100363870 100383023 + Fam19a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079512.1 MGP_C57BL6NJ_G0031508.1 mouse_genomes_project 6 100365281 100366550 + Fam19a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079513.1 MGP_C57BL6NJ_G0031508.1 mouse_genomes_project 6 100365943 100960489 + MGP_C57BL6NJ_P0079513 Fam19a1 protein_coding protein_coding MGP_C57BL6NJ_T0015901.1 MGP_C57BL6NJ_G0013946.1 mouse_genomes_project 6 96336396 96336872 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080460.1 MGP_C57BL6NJ_G0031688.1 mouse_genomes_project 6 130910547 130919966 - MGP_C57BL6NJ_P0080460 1700013D24Rik protein_coding protein_coding MGP_C57BL6NJ_T0080461.1 MGP_C57BL6NJ_G0031688.1 mouse_genomes_project 6 130910552 130919949 - 1700013D24Rik protein_coding lincRNA MGP_C57BL6NJ_T0079834.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119008978 119019036 + MGP_C57BL6NJ_P0079834 Creld1 protein_coding protein_coding MGP_C57BL6NJ_T0079835.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119009103 119014920 + Creld1 protein_coding retained_intron MGP_C57BL6NJ_T0079836.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119009535 119014089 + Creld1 protein_coding retained_intron MGP_C57BL6NJ_T0079837.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119013174 119015406 + Creld1 protein_coding retained_intron MGP_C57BL6NJ_T0079838.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119017714 119019041 + Creld1 protein_coding retained_intron MGP_C57BL6NJ_T0079839.1 MGP_C57BL6NJ_G0031566.1 mouse_genomes_project 6 119017716 119019033 + Creld1 protein_coding retained_intron MGP_C57BL6NJ_T0078378.1 MGP_C57BL6NJ_G0031279.1 mouse_genomes_project 6 68336071 68337107 - MGP_C57BL6NJ_P0078378 Vmn1r38 protein_coding protein_coding MGP_C57BL6NJ_T0002069.1 MGP_C57BL6NJ_G0001960.1 mouse_genomes_project 6 16235419 16237006 - TEC TEC MGP_C57BL6NJ_T0099562.1 MGP_C57BL6NJ_G0037609.1 mouse_genomes_project 6 95540088 95550066 + Gm45216 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0079389.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216196 95279831 + MGP_C57BL6NJ_P0079389 Fbln2 protein_coding protein_coding MGP_C57BL6NJ_T0079390.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216196 95279832 + MGP_C57BL6NJ_P0079390 Fbln2 protein_coding protein_coding MGP_C57BL6NJ_T0079391.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216563 95236823 + MGP_C57BL6NJ_P0079391 Fbln2 protein_coding protein_coding MGP_C57BL6NJ_T0079392.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216565 95237002 + MGP_C57BL6NJ_P0079392 Fbln2 protein_coding protein_coding MGP_C57BL6NJ_T0079393.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216568 95217968 + Fbln2 protein_coding processed_transcript MGP_C57BL6NJ_T0079394.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95216572 95237022 + MGP_C57BL6NJ_P0079394 Fbln2 protein_coding protein_coding MGP_C57BL6NJ_T0079395.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95260869 95262695 + Fbln2 protein_coding retained_intron MGP_C57BL6NJ_T0079396.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95261272 95268267 + Fbln2 protein_coding retained_intron MGP_C57BL6NJ_T0079397.1 MGP_C57BL6NJ_G0031483.1 mouse_genomes_project 6 95270747 95279723 + Fbln2 protein_coding retained_intron MGP_C57BL6NJ_T0080288.1 MGP_C57BL6NJ_G0031646.1 mouse_genomes_project 6 126853627 126881305 + MGP_C57BL6NJ_P0080288 Slc25a18 protein_coding protein_coding MGP_C57BL6NJ_T0015900.1 MGP_C57BL6NJ_G0013945.1 mouse_genomes_project 6 96324798 96324954 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015645.1 MGP_C57BL6NJ_G0013690.1 mouse_genomes_project 6 7449054 7450117 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015878.1 MGP_C57BL6NJ_G0013923.1 mouse_genomes_project 6 87224934 87225481 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081341.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151182006 151218319 - MGP_C57BL6NJ_P0081341 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081343.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151188607 151218357 - MGP_C57BL6NJ_P0081343 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081344.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151188611 151198450 - MGP_C57BL6NJ_P0081344 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081345.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151189520 151195323 - Recql protein_coding processed_transcript MGP_C57BL6NJ_T0081346.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151193036 151218370 - MGP_C57BL6NJ_P0081346 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081347.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151193781 151195235 - MGP_C57BL6NJ_P0081347 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081348.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151194418 151195878 - Recql protein_coding retained_intron MGP_C57BL6NJ_T0081349.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151196281 151200225 - Recql protein_coding processed_transcript MGP_C57BL6NJ_T0081350.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151198979 151199391 - Recql protein_coding retained_intron MGP_C57BL6NJ_T0081351.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151206480 151218292 - MGP_C57BL6NJ_P0081351 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081352.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151206480 151218257 - MGP_C57BL6NJ_P0081352 Recql protein_coding protein_coding MGP_C57BL6NJ_T0081353.1 MGP_C57BL6NJ_G0031906.1 mouse_genomes_project 6 151208579 151218365 - MGP_C57BL6NJ_P0081353 Recql protein_coding protein_coding MGP_C57BL6NJ_T0000297.1 MGP_C57BL6NJ_G0000222.1 mouse_genomes_project 6 72840574 72840873 + MGP_C57BL6NJ_P0000297 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002113.1 MGP_C57BL6NJ_G0002004.1 mouse_genomes_project 6 45919347 45921477 + TEC TEC MGP_C57BL6NJ_T0077039.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26752625 26776184 - MGP_C57BL6NJ_P0077039 Zfp800 protein_coding protein_coding MGP_C57BL6NJ_T0077040.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26752938 26918407 - MGP_C57BL6NJ_P0077040 Zfp800 protein_coding protein_coding MGP_C57BL6NJ_T0077041.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26754147 26776196 - MGP_C57BL6NJ_P0077041 Zfp800 protein_coding protein_coding MGP_C57BL6NJ_T0077042.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26755605 26775298 - MGP_C57BL6NJ_P0077042 Zfp800 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077043.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26756190 26776187 - MGP_C57BL6NJ_P0077043 Zfp800 protein_coding protein_coding MGP_C57BL6NJ_T0077044.1 MGP_C57BL6NJ_G0030943.1 mouse_genomes_project 6 26757117 26776205 - MGP_C57BL6NJ_P0077044 Zfp800 protein_coding protein_coding MGP_C57BL6NJ_T0077733.1 MGP_C57BL6NJ_G0031098.1 mouse_genomes_project 6 42313881 42314835 + MGP_C57BL6NJ_P0077733 Olfr38 protein_coding protein_coding MGP_C57BL6NJ_T0016056.1 MGP_C57BL6NJ_G0014101.1 mouse_genomes_project 6 140045544 140045995 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008905.1 MGP_C57BL6NJ_G0007198.1 mouse_genomes_project 6 130834468 130838777 + lincRNA lincRNA MGP_C57BL6NJ_T0078425.1 MGP_C57BL6NJ_G0031290.1 mouse_genomes_project 6 73282086 73286617 + MGP_C57BL6NJ_P0078425 Foxi3 protein_coding protein_coding MGP_C57BL6NJ_T0078426.1 MGP_C57BL6NJ_G0031290.1 mouse_genomes_project 6 73282161 73286620 + MGP_C57BL6NJ_P0078426 Foxi3 protein_coding protein_coding MGP_C57BL6NJ_T0005228.1 MGP_C57BL6NJ_G0004454.1 mouse_genomes_project 6 119486610 119489078 + Gm15082 antisense antisense MGP_C57BL6NJ_T0000452.1 MGP_C57BL6NJ_G0000371.1 mouse_genomes_project 6 71936708 71937158 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0100509.1 MGP_C57BL6NJ_G0038555.1 mouse_genomes_project 6 19129496 19129599 + Gm26373 snRNA snRNA MGP_C57BL6NJ_T0000424.1 MGP_C57BL6NJ_G0000343.1 mouse_genomes_project 6 70913407 70913873 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0018782.1 MGP_C57BL6NJ_G0016043.1 mouse_genomes_project 6 151675907 151695399 + Gm7457 processed_transcript antisense MGP_C57BL6NJ_T0018783.1 MGP_C57BL6NJ_G0016043.1 mouse_genomes_project 6 151676061 151678878 + Gm7457 processed_transcript retained_intron MGP_C57BL6NJ_T0101831.1 MGP_C57BL6NJ_G0039877.1 mouse_genomes_project 6 130608737 130608813 - Gm24843 snoRNA snoRNA MGP_C57BL6NJ_T0077754.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42897277 42924335 + MGP_C57BL6NJ_P0077754 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077755.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42906115 42920924 + MGP_C57BL6NJ_P0077755 protein_coding protein_coding MGP_C57BL6NJ_T0077756.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42908542 42911525 + protein_coding retained_intron MGP_C57BL6NJ_T0077757.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42908651 42918800 + protein_coding retained_intron MGP_C57BL6NJ_T0077758.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42911061 42920921 + protein_coding retained_intron MGP_C57BL6NJ_T0077759.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42912594 42915171 + protein_coding retained_intron MGP_C57BL6NJ_T0077760.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42914218 42920920 + protein_coding retained_intron MGP_C57BL6NJ_T0077761.1 MGP_C57BL6NJ_G0031113.1 mouse_genomes_project 6 42914486 42915620 + protein_coding retained_intron MGP_C57BL6NJ_T0101786.1 MGP_C57BL6NJ_G0039832.1 mouse_genomes_project 6 41809577 41809655 + Gm25108 snoRNA snoRNA MGP_C57BL6NJ_T0005261.1 MGP_C57BL6NJ_G0004483.1 mouse_genomes_project 6 136184659 136188011 - Gm44000 antisense antisense MGP_C57BL6NJ_T0005128.1 MGP_C57BL6NJ_G0004392.1 mouse_genomes_project 6 55924320 55935896 - Gm44073 antisense antisense MGP_C57BL6NJ_T0015896.1 MGP_C57BL6NJ_G0013941.1 mouse_genomes_project 6 92714981 92715504 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002241.1 MGP_C57BL6NJ_G0002132.1 mouse_genomes_project 6 105586665 105587272 - TEC TEC MGP_C57BL6NJ_T0011024.1 MGP_C57BL6NJ_G0009109.1 mouse_genomes_project 6 71550904 71561540 + miRNA miRNA MGP_C57BL6NJ_T0078524.1 MGP_C57BL6NJ_G0031309.1 mouse_genomes_project 6 74778979 74806510 - MGP_C57BL6NJ_P0078524 Usp39 protein_coding protein_coding MGP_C57BL6NJ_T0078525.1 MGP_C57BL6NJ_G0031309.1 mouse_genomes_project 6 74781601 74794850 - Usp39 protein_coding retained_intron MGP_C57BL6NJ_T0078526.1 MGP_C57BL6NJ_G0031309.1 mouse_genomes_project 6 74797741 74804450 - MGP_C57BL6NJ_P0078526 Usp39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011929.1 MGP_C57BL6NJ_G0010014.1 mouse_genomes_project 6 117443374 117443689 + Gm26362 misc_RNA misc_RNA MGP_C57BL6NJ_T0015825.1 MGP_C57BL6NJ_G0013870.1 mouse_genomes_project 6 69010712 69011133 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080125.1 MGP_C57BL6NJ_G0031621.1 mouse_genomes_project 6 123962987 123985157 - Csgalnact2 protein_coding retained_intron MGP_C57BL6NJ_T0080126.1 MGP_C57BL6NJ_G0031621.1 mouse_genomes_project 6 123962987 123994677 - MGP_C57BL6NJ_P0080126 Csgalnact2 protein_coding protein_coding MGP_C57BL6NJ_T0080127.1 MGP_C57BL6NJ_G0031621.1 mouse_genomes_project 6 123964871 123981943 - MGP_C57BL6NJ_P0080127 Csgalnact2 protein_coding protein_coding MGP_C57BL6NJ_T0077410.1 MGP_C57BL6NJ_G0031004.1 mouse_genomes_project 6 33894911 33929181 - MGP_C57BL6NJ_P0077410 protein_coding protein_coding MGP_C57BL6NJ_T0077411.1 MGP_C57BL6NJ_G0031004.1 mouse_genomes_project 6 33895568 33939586 - MGP_C57BL6NJ_P0077411 protein_coding protein_coding MGP_C57BL6NJ_T0077412.1 MGP_C57BL6NJ_G0031004.1 mouse_genomes_project 6 33897136 33898211 - protein_coding processed_transcript MGP_C57BL6NJ_T0077413.1 MGP_C57BL6NJ_G0031004.1 mouse_genomes_project 6 33898069 33905537 - MGP_C57BL6NJ_P0077413 protein_coding protein_coding MGP_C57BL6NJ_T0077414.1 MGP_C57BL6NJ_G0031004.1 mouse_genomes_project 6 33903472 33930236 - MGP_C57BL6NJ_P0077414 protein_coding protein_coding MGP_C57BL6NJ_T0076928.1 MGP_C57BL6NJ_G0030914.1 mouse_genomes_project 6 16678305 16683780 + MGP_C57BL6NJ_P0076928 Lsm8 protein_coding protein_coding MGP_C57BL6NJ_T0076929.1 MGP_C57BL6NJ_G0030914.1 mouse_genomes_project 6 16678367 16685478 + Lsm8 protein_coding retained_intron MGP_C57BL6NJ_T0076930.1 MGP_C57BL6NJ_G0030914.1 mouse_genomes_project 6 16678382 16680134 + Lsm8 protein_coding retained_intron MGP_C57BL6NJ_T0076931.1 MGP_C57BL6NJ_G0030914.1 mouse_genomes_project 6 16678394 16683474 + MGP_C57BL6NJ_P0076931 Lsm8 protein_coding protein_coding MGP_C57BL6NJ_T0016030.1 MGP_C57BL6NJ_G0014075.1 mouse_genomes_project 6 135836874 135836991 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080321.1 MGP_C57BL6NJ_G0031651.1 mouse_genomes_project 6 127298534 127302174 + MGP_C57BL6NJ_P0080321 Pex26 protein_coding protein_coding MGP_C57BL6NJ_T0080322.1 MGP_C57BL6NJ_G0031651.1 mouse_genomes_project 6 127298621 127310913 + MGP_C57BL6NJ_P0080322 Pex26 protein_coding protein_coding MGP_C57BL6NJ_T0080323.1 MGP_C57BL6NJ_G0031651.1 mouse_genomes_project 6 127298630 127301814 + Pex26 protein_coding retained_intron MGP_C57BL6NJ_T0080324.1 MGP_C57BL6NJ_G0031651.1 mouse_genomes_project 6 127298997 127308348 + MGP_C57BL6NJ_P0080324 Pex26 protein_coding protein_coding MGP_C57BL6NJ_T0078473.1 MGP_C57BL6NJ_G0031301.1 mouse_genomes_project 6 74114791 74220986 + MGP_C57BL6NJ_P0078473 Reep1 protein_coding protein_coding MGP_C57BL6NJ_T0000252.1 MGP_C57BL6NJ_G0000188.1 mouse_genomes_project 6 71716947 71718738 - MGP_C57BL6NJ_P0000252 Igkv4-53 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000253.1 MGP_C57BL6NJ_G0000188.1 mouse_genomes_project 6 71718202 71718490 - MGP_C57BL6NJ_P0000253 Igkv4-53 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0080612.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131697059 131703462 + MGP_C57BL6NJ_P0080612 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080613.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131697227 131703462 + MGP_C57BL6NJ_P0080613 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080614.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131697440 131700097 + MGP_C57BL6NJ_P0080614 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080615.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131698802 131703462 + MGP_C57BL6NJ_P0080615 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080616.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131698975 131702509 + MGP_C57BL6NJ_P0080616 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080617.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131699004 131699811 + MGP_C57BL6NJ_P0080617 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0080618.1 MGP_C57BL6NJ_G0031714.1 mouse_genomes_project 6 131700027 131701415 + MGP_C57BL6NJ_P0080618 Pianp protein_coding protein_coding MGP_C57BL6NJ_T0002126.1 MGP_C57BL6NJ_G0002017.1 mouse_genomes_project 6 53020449 53024194 - TEC TEC MGP_C57BL6NJ_T0011031.1 MGP_C57BL6NJ_G0009116.1 mouse_genomes_project 6 85097403 85097481 - Mir468 miRNA miRNA MGP_C57BL6NJ_T0015731.1 MGP_C57BL6NJ_G0013776.1 mouse_genomes_project 6 44589749 44590646 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076655.1 MGP_C57BL6NJ_G0030865.1 mouse_genomes_project 6 1403781 1455166 + MGP_C57BL6NJ_P0076655 Casd1 protein_coding protein_coding MGP_C57BL6NJ_T0076656.1 MGP_C57BL6NJ_G0030865.1 mouse_genomes_project 6 1403891 1432648 + MGP_C57BL6NJ_P0076656 Casd1 protein_coding protein_coding MGP_C57BL6NJ_T0076657.1 MGP_C57BL6NJ_G0030865.1 mouse_genomes_project 6 1404088 1415607 + MGP_C57BL6NJ_P0076657 Casd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076658.1 MGP_C57BL6NJ_G0030865.1 mouse_genomes_project 6 1404145 1429514 + MGP_C57BL6NJ_P0076658 Casd1 protein_coding protein_coding MGP_C57BL6NJ_T0076659.1 MGP_C57BL6NJ_G0030865.1 mouse_genomes_project 6 1442969 1452784 + MGP_C57BL6NJ_P0076659 Casd1 protein_coding protein_coding MGP_C57BL6NJ_T0077935.1 MGP_C57BL6NJ_G0031155.1 mouse_genomes_project 6 49150117 49151927 + Gpnmb protein_coding retained_intron MGP_C57BL6NJ_T0077936.1 MGP_C57BL6NJ_G0031155.1 mouse_genomes_project 6 49150186 49171696 + MGP_C57BL6NJ_P0077936 Gpnmb protein_coding protein_coding MGP_C57BL6NJ_T0077937.1 MGP_C57BL6NJ_G0031155.1 mouse_genomes_project 6 49150236 49156462 + MGP_C57BL6NJ_P0077937 Gpnmb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077938.1 MGP_C57BL6NJ_G0031155.1 mouse_genomes_project 6 49150248 49188236 + MGP_C57BL6NJ_P0077938 Gpnmb protein_coding protein_coding MGP_C57BL6NJ_T0077939.1 MGP_C57BL6NJ_G0031155.1 mouse_genomes_project 6 49160963 49161891 + Gpnmb protein_coding retained_intron MGP_C57BL6NJ_T0100508.1 MGP_C57BL6NJ_G0038554.1 mouse_genomes_project 6 17485926 17486033 + Gm22828 snRNA snRNA MGP_C57BL6NJ_T0005094.1 MGP_C57BL6NJ_G0004367.1 mouse_genomes_project 6 36017250 36064694 + 1700111E14Rik antisense antisense MGP_C57BL6NJ_T0078424.1 MGP_C57BL6NJ_G0031289.1 mouse_genomes_project 6 73234897 73240738 - MGP_C57BL6NJ_P0078424 Tex37 protein_coding protein_coding MGP_C57BL6NJ_T0008692.1 MGP_C57BL6NJ_G0007038.1 mouse_genomes_project 6 10893293 10895953 + 1700016P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0002157.1 MGP_C57BL6NJ_G0002048.1 mouse_genomes_project 6 78273005 78274370 - TEC TEC MGP_C57BL6NJ_T0015756.1 MGP_C57BL6NJ_G0013801.1 mouse_genomes_project 6 50050185 50052039 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015665.1 MGP_C57BL6NJ_G0013710.1 mouse_genomes_project 6 16076888 16077849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008746.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35236751 35420780 - lincRNA lincRNA MGP_C57BL6NJ_T0008747.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35239118 35302193 - lincRNA lincRNA MGP_C57BL6NJ_T0008748.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35295022 35421021 - lincRNA lincRNA MGP_C57BL6NJ_T0008749.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35369248 35421163 - lincRNA lincRNA MGP_C57BL6NJ_T0008750.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35420307 35421217 - lincRNA lincRNA MGP_C57BL6NJ_T0008751.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35420309 35423120 - lincRNA lincRNA MGP_C57BL6NJ_T0008752.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35420316 35421846 - lincRNA lincRNA MGP_C57BL6NJ_T0008753.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35420594 35422356 - lincRNA lincRNA MGP_C57BL6NJ_T0008754.1 MGP_C57BL6NJ_G0007076.1 mouse_genomes_project 6 35420668 35421987 - lincRNA lincRNA MGP_C57BL6NJ_T0100561.1 MGP_C57BL6NJ_G0038607.1 mouse_genomes_project 6 144519477 144519667 + Gm26105 snRNA snRNA MGP_C57BL6NJ_T0077305.1 MGP_C57BL6NJ_G0030987.1 mouse_genomes_project 6 30835935 30844400 + 1700012A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0077306.1 MGP_C57BL6NJ_G0030987.1 mouse_genomes_project 6 30835957 30844400 + 1700012A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0077307.1 MGP_C57BL6NJ_G0030987.1 mouse_genomes_project 6 30835974 30844394 + MGP_C57BL6NJ_P0077307 1700012A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0077308.1 MGP_C57BL6NJ_G0030987.1 mouse_genomes_project 6 30843619 30844100 + 1700012A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0015742.1 MGP_C57BL6NJ_G0013787.1 mouse_genomes_project 6 48733654 48734112 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078059.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52638156 52641144 - MGP_C57BL6NJ_P0078059 Hoxa13 protein_coding protein_coding MGP_C57BL6NJ_T0078060.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52639315 52641221 - MGP_C57BL6NJ_P0078060 Hoxa13 protein_coding protein_coding MGP_C57BL6NJ_T0078061.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52639333 52641143 - Hoxa13 protein_coding processed_transcript MGP_C57BL6NJ_T0078062.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52639333 52641143 - Hoxa13 protein_coding processed_transcript MGP_C57BL6NJ_T0078063.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52639333 52641143 - Hoxa13 protein_coding processed_transcript MGP_C57BL6NJ_T0078064.1 MGP_C57BL6NJ_G0031186.1 mouse_genomes_project 6 52639333 52641143 - MGP_C57BL6NJ_P0078064 Hoxa13 protein_coding protein_coding MGP_C57BL6NJ_T0101844.1 MGP_C57BL6NJ_G0039890.1 mouse_genomes_project 6 154507731 154507846 + Gm25373 snoRNA snoRNA MGP_C57BL6NJ_T0008772.1 MGP_C57BL6NJ_G0007091.1 mouse_genomes_project 6 51579161 51583485 - Gm44447 lincRNA lincRNA MGP_C57BL6NJ_T0079711.1 MGP_C57BL6NJ_G0031549.1 mouse_genomes_project 6 118173161 118425959 - MGP_C57BL6NJ_P0079711 Srgap3 protein_coding protein_coding MGP_C57BL6NJ_T0079712.1 MGP_C57BL6NJ_G0031549.1 mouse_genomes_project 6 118173164 118425447 - MGP_C57BL6NJ_P0079712 Srgap3 protein_coding protein_coding MGP_C57BL6NJ_T0079713.1 MGP_C57BL6NJ_G0031549.1 mouse_genomes_project 6 118194175 118223565 - MGP_C57BL6NJ_P0079713 Srgap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079714.1 MGP_C57BL6NJ_G0031549.1 mouse_genomes_project 6 118223191 118425959 - Srgap3 protein_coding retained_intron MGP_C57BL6NJ_T0079715.1 MGP_C57BL6NJ_G0031549.1 mouse_genomes_project 6 118252699 118290712 - Srgap3 protein_coding retained_intron MGP_C57BL6NJ_T0000246.1 MGP_C57BL6NJ_G0000183.1 mouse_genomes_project 6 71264241 71264775 - MGP_C57BL6NJ_P0000246 Igkv4-79 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0076879.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15353715 15373674 + Capza2 protein_coding processed_transcript MGP_C57BL6NJ_T0076880.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15354464 15384199 + MGP_C57BL6NJ_P0076880 Capza2 protein_coding protein_coding MGP_C57BL6NJ_T0076881.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15354516 15376836 + Capza2 protein_coding retained_intron MGP_C57BL6NJ_T0076882.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15354523 15373624 + Capza2 protein_coding processed_transcript MGP_C57BL6NJ_T0076883.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15354591 15382815 + MGP_C57BL6NJ_P0076883 Capza2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076884.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15354594 15378037 + MGP_C57BL6NJ_P0076884 Capza2 protein_coding protein_coding MGP_C57BL6NJ_T0076885.1 MGP_C57BL6NJ_G0030908.1 mouse_genomes_project 6 15377832 15382913 + Capza2 protein_coding retained_intron MGP_C57BL6NJ_T0008773.1 MGP_C57BL6NJ_G0007092.1 mouse_genomes_project 6 51682222 51695354 + Gm6559 lincRNA lincRNA MGP_C57BL6NJ_T0077257.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29358031 29400100 - MGP_C57BL6NJ_P0077257 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0077258.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29358033 29400044 - MGP_C57BL6NJ_P0077258 Cep41 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077259.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29358952 29400046 - MGP_C57BL6NJ_P0077259 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0077260.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29358953 29373845 - Cep41 protein_coding processed_transcript MGP_C57BL6NJ_T0077261.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29360106 29361384 - Cep41 protein_coding retained_intron MGP_C57BL6NJ_T0077262.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29362956 29365859 - Cep41 protein_coding retained_intron MGP_C57BL6NJ_T0077263.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29365471 29399439 - MGP_C57BL6NJ_P0077263 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0077264.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29370517 29400027 - MGP_C57BL6NJ_P0077264 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0077265.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29370803 29385023 - MGP_C57BL6NJ_P0077265 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0077266.1 MGP_C57BL6NJ_G0030980.1 mouse_genomes_project 6 29383577 29400051 - MGP_C57BL6NJ_P0077266 Cep41 protein_coding protein_coding MGP_C57BL6NJ_T0076618.1 MGP_C57BL6NJ_G0030857.1 mouse_genomes_project 6 170605 208112 - MGP_C57BL6NJ_P0076618 Hepacam2 protein_coding protein_coding MGP_C57BL6NJ_T0076619.1 MGP_C57BL6NJ_G0030857.1 mouse_genomes_project 6 170904 200930 - Hepacam2 protein_coding retained_intron MGP_C57BL6NJ_T0076620.1 MGP_C57BL6NJ_G0030857.1 mouse_genomes_project 6 189604 200944 - MGP_C57BL6NJ_P0076620 Hepacam2 protein_coding protein_coding MGP_C57BL6NJ_T0076621.1 MGP_C57BL6NJ_G0030857.1 mouse_genomes_project 6 196834 211813 - MGP_C57BL6NJ_P0076621 Hepacam2 protein_coding protein_coding MGP_C57BL6NJ_T0076622.1 MGP_C57BL6NJ_G0030857.1 mouse_genomes_project 6 197125 200911 - Hepacam2 protein_coding retained_intron MGP_C57BL6NJ_T0078598.1 MGP_C57BL6NJ_G0031321.1 mouse_genomes_project 6 75092847 75101128 - MGP_C57BL6NJ_P0078598 Tgoln1 protein_coding protein_coding MGP_C57BL6NJ_T0002247.1 MGP_C57BL6NJ_G0002138.1 mouse_genomes_project 6 106242774 106244883 + TEC TEC MGP_C57BL6NJ_T0077645.1 MGP_C57BL6NJ_G0031068.1 mouse_genomes_project 6 41147824 41171394 - MGP_C57BL6NJ_P0077645 Trpv6 protein_coding protein_coding MGP_C57BL6NJ_T0077646.1 MGP_C57BL6NJ_G0031068.1 mouse_genomes_project 6 41147827 41171394 - MGP_C57BL6NJ_P0077646 Trpv6 protein_coding protein_coding MGP_C57BL6NJ_T0077647.1 MGP_C57BL6NJ_G0031068.1 mouse_genomes_project 6 41150695 41171369 - Trpv6 protein_coding retained_intron MGP_C57BL6NJ_T0080744.1 MGP_C57BL6NJ_G0031737.1 mouse_genomes_project 6 133364098 133366960 - MGP_C57BL6NJ_P0080744 Kcna5 protein_coding protein_coding MGP_C57BL6NJ_T0078945.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88983090 88997529 + MGP_C57BL6NJ_P0078945 Smyd5 protein_coding protein_coding MGP_C57BL6NJ_T0078946.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88983103 88991436 + Smyd5 protein_coding retained_intron MGP_C57BL6NJ_T0078947.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88983174 88983920 + Smyd5 protein_coding retained_intron MGP_C57BL6NJ_T0078948.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88990237 88993049 + Smyd5 protein_coding retained_intron MGP_C57BL6NJ_T0078949.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88992723 88996537 + Smyd5 protein_coding retained_intron MGP_C57BL6NJ_T0078950.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88992818 88996054 + Smyd5 protein_coding processed_transcript MGP_C57BL6NJ_T0078951.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88992833 88996291 + Smyd5 protein_coding retained_intron MGP_C57BL6NJ_T0078952.1 MGP_C57BL6NJ_G0031392.1 mouse_genomes_project 6 88993666 88996526 + Smyd5 protein_coding processed_transcript MGP_C57BL6NJ_T0077610.1 MGP_C57BL6NJ_G0031048.1 mouse_genomes_project 6 39946671 39951356 - MGP_C57BL6NJ_P0077610 Prss37 protein_coding protein_coding MGP_C57BL6NJ_T0077611.1 MGP_C57BL6NJ_G0031048.1 mouse_genomes_project 6 39951016 39951331 - Prss37 protein_coding processed_transcript MGP_C57BL6NJ_T0011046.1 MGP_C57BL6NJ_G0009131.1 mouse_genomes_project 6 110345879 110345959 + Gm25570 miRNA miRNA MGP_C57BL6NJ_T0008735.1 MGP_C57BL6NJ_G0007067.1 mouse_genomes_project 6 30890622 30891706 + Gm13850 lincRNA lincRNA MGP_C57BL6NJ_T0076854.1 MGP_C57BL6NJ_G0030904.1 mouse_genomes_project 6 14746891 14786690 + MGP_C57BL6NJ_P0076854 Tes protein_coding protein_coding MGP_C57BL6NJ_T0076855.1 MGP_C57BL6NJ_G0030904.1 mouse_genomes_project 6 14746902 14750692 + Tes protein_coding retained_intron MGP_C57BL6NJ_T0076856.1 MGP_C57BL6NJ_G0030904.1 mouse_genomes_project 6 14746910 14778255 + MGP_C57BL6NJ_P0076856 Tes protein_coding protein_coding MGP_C57BL6NJ_T0076857.1 MGP_C57BL6NJ_G0030904.1 mouse_genomes_project 6 14746934 14769738 + Tes protein_coding processed_transcript MGP_C57BL6NJ_T0076858.1 MGP_C57BL6NJ_G0030904.1 mouse_genomes_project 6 14746966 14786695 + MGP_C57BL6NJ_P0076858 Tes protein_coding protein_coding MGP_C57BL6NJ_T0011025.1 MGP_C57BL6NJ_G0009110.1 mouse_genomes_project 6 72144209 72144319 - Gm23694 miRNA miRNA MGP_C57BL6NJ_T0000257.1 MGP_C57BL6NJ_G0000192.1 mouse_genomes_project 6 71855195 71855695 - MGP_C57BL6NJ_P0000257 Igkv12-46 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0078967.1 MGP_C57BL6NJ_G0031395.1 mouse_genomes_project 6 89020667 89057996 - MGP_C57BL6NJ_P0078967 Fbxo41 protein_coding protein_coding MGP_C57BL6NJ_T0078968.1 MGP_C57BL6NJ_G0031395.1 mouse_genomes_project 6 89020671 89057888 - MGP_C57BL6NJ_P0078968 Fbxo41 protein_coding protein_coding MGP_C57BL6NJ_T0078969.1 MGP_C57BL6NJ_G0031395.1 mouse_genomes_project 6 89020673 89057860 - MGP_C57BL6NJ_P0078969 Fbxo41 protein_coding protein_coding MGP_C57BL6NJ_T0011022.1 MGP_C57BL6NJ_G0009107.1 mouse_genomes_project 6 56173173 56173283 + Gm44352 miRNA miRNA MGP_C57BL6NJ_T0015651.1 MGP_C57BL6NJ_G0013696.1 mouse_genomes_project 6 10345357 10346178 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079383.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95157413 95178063 + MGP_C57BL6NJ_P0079383 Hdac11 protein_coding protein_coding MGP_C57BL6NJ_T0079384.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95157481 95160382 + Hdac11 protein_coding retained_intron MGP_C57BL6NJ_T0079385.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95157489 95169901 + MGP_C57BL6NJ_P0079385 Hdac11 protein_coding protein_coding MGP_C57BL6NJ_T0079386.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95157827 95171227 + Hdac11 protein_coding retained_intron MGP_C57BL6NJ_T0079387.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95169029 95172838 + MGP_C57BL6NJ_P0079387 Hdac11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079388.1 MGP_C57BL6NJ_G0031482.1 mouse_genomes_project 6 95175142 95176662 + Hdac11 protein_coding retained_intron MGP_C57BL6NJ_T0100558.1 MGP_C57BL6NJ_G0038604.1 mouse_genomes_project 6 137428467 137428542 + Gm24676 snRNA snRNA MGP_C57BL6NJ_T0077762.1 MGP_C57BL6NJ_G0031114.1 mouse_genomes_project 6 42937429 42943310 - MGP_C57BL6NJ_P0077762 Nobox protein_coding protein_coding MGP_C57BL6NJ_T0077763.1 MGP_C57BL6NJ_G0031114.1 mouse_genomes_project 6 42937455 42938891 - Nobox protein_coding processed_transcript MGP_C57BL6NJ_T0077764.1 MGP_C57BL6NJ_G0031114.1 mouse_genomes_project 6 42937653 42940992 - MGP_C57BL6NJ_P0077764 Nobox protein_coding protein_coding MGP_C57BL6NJ_T0078300.1 MGP_C57BL6NJ_G0031257.1 mouse_genomes_project 6 59851561 59945854 - MGP_C57BL6NJ_P0078300 Fam13a protein_coding protein_coding MGP_C57BL6NJ_T0078301.1 MGP_C57BL6NJ_G0031257.1 mouse_genomes_project 6 59855056 59945645 - MGP_C57BL6NJ_P0078301 Fam13a protein_coding protein_coding MGP_C57BL6NJ_T0078302.1 MGP_C57BL6NJ_G0031257.1 mouse_genomes_project 6 59895185 59945727 - Fam13a protein_coding processed_transcript MGP_C57BL6NJ_T0078303.1 MGP_C57BL6NJ_G0031257.1 mouse_genomes_project 6 59924097 59945809 - Fam13a protein_coding retained_intron MGP_C57BL6NJ_T0078304.1 MGP_C57BL6NJ_G0031257.1 mouse_genomes_project 6 59941439 59945748 - Fam13a protein_coding retained_intron MGP_C57BL6NJ_T0078512.1 MGP_C57BL6NJ_G0031306.1 mouse_genomes_project 6 74533466 74601689 + MGP_C57BL6NJ_P0078512 St3gal5 protein_coding protein_coding MGP_C57BL6NJ_T0078513.1 MGP_C57BL6NJ_G0031306.1 mouse_genomes_project 6 74533497 74601689 + MGP_C57BL6NJ_P0078513 St3gal5 protein_coding protein_coding MGP_C57BL6NJ_T0078514.1 MGP_C57BL6NJ_G0031306.1 mouse_genomes_project 6 74533631 74592806 + MGP_C57BL6NJ_P0078514 St3gal5 protein_coding protein_coding MGP_C57BL6NJ_T0078515.1 MGP_C57BL6NJ_G0031306.1 mouse_genomes_project 6 74555575 74585853 + MGP_C57BL6NJ_P0078515 St3gal5 protein_coding protein_coding MGP_C57BL6NJ_T0081400.1 MGP_C57BL6NJ_G0031917.1 mouse_genomes_project 6 152050832 152103737 + MGP_C57BL6NJ_P0081400 Etnk1 protein_coding protein_coding MGP_C57BL6NJ_T0081401.1 MGP_C57BL6NJ_G0031917.1 mouse_genomes_project 6 152050841 152093743 + MGP_C57BL6NJ_P0081401 Etnk1 protein_coding protein_coding MGP_C57BL6NJ_T0081402.1 MGP_C57BL6NJ_G0031917.1 mouse_genomes_project 6 152050865 152077209 + Etnk1 protein_coding retained_intron MGP_C57BL6NJ_T0081403.1 MGP_C57BL6NJ_G0031917.1 mouse_genomes_project 6 152050865 152117540 + MGP_C57BL6NJ_P0081403 Etnk1 protein_coding protein_coding MGP_C57BL6NJ_T0077132.1 MGP_C57BL6NJ_G0030962.1 mouse_genomes_project 6 28050236 28052265 + MGP_C57BL6NJ_P0077132 Gm9047 protein_coding protein_coding MGP_C57BL6NJ_T0016099.1 MGP_C57BL6NJ_G0014144.1 mouse_genomes_project 6 157875673 157876281 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080619.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709510 131736547 + Zfp384 protein_coding retained_intron MGP_C57BL6NJ_T0080620.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709544 131741404 + MGP_C57BL6NJ_P0080620 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080621.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709592 131741404 + Zfp384 protein_coding retained_intron MGP_C57BL6NJ_T0080622.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709603 131741632 + MGP_C57BL6NJ_P0080622 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080623.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709641 131732270 + Zfp384 protein_coding processed_transcript MGP_C57BL6NJ_T0080624.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131709648 131741527 + MGP_C57BL6NJ_P0080624 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080625.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710034 131741637 + MGP_C57BL6NJ_P0080625 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080626.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710078 131725133 + Zfp384 protein_coding processed_transcript MGP_C57BL6NJ_T0080627.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710080 131725279 + MGP_C57BL6NJ_P0080627 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080628.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710100 131738138 + MGP_C57BL6NJ_P0080628 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080629.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710101 131738129 + MGP_C57BL6NJ_P0080629 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080630.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710110 131733153 + Zfp384 protein_coding retained_intron MGP_C57BL6NJ_T0080631.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710170 131738138 + MGP_C57BL6NJ_P0080631 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080632.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131710757 131738135 + MGP_C57BL6NJ_P0080632 Zfp384 protein_coding protein_coding MGP_C57BL6NJ_T0080633.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131725152 131733149 + Zfp384 protein_coding retained_intron MGP_C57BL6NJ_T0080634.1 MGP_C57BL6NJ_G0031715.1 mouse_genomes_project 6 131730769 131741584 + Zfp384 protein_coding retained_intron MGP_C57BL6NJ_T0100557.1 MGP_C57BL6NJ_G0038603.1 mouse_genomes_project 6 137350709 137350771 + Gm22555 snRNA snRNA MGP_C57BL6NJ_T0008708.1 MGP_C57BL6NJ_G0007050.1 mouse_genomes_project 6 28610011 28633450 + lincRNA lincRNA MGP_C57BL6NJ_T0008709.1 MGP_C57BL6NJ_G0007050.1 mouse_genomes_project 6 28610013 28633696 + lincRNA lincRNA MGP_C57BL6NJ_T0080971.1 MGP_C57BL6NJ_G0031799.1 mouse_genomes_project 6 137213069 137217375 - Klra5 protein_coding retained_intron MGP_C57BL6NJ_T0080972.1 MGP_C57BL6NJ_G0031799.1 mouse_genomes_project 6 137213069 137372875 - MGP_C57BL6NJ_P0080972 Klra5 protein_coding protein_coding MGP_C57BL6NJ_T0080973.1 MGP_C57BL6NJ_G0031799.1 mouse_genomes_project 6 137213069 137226849 - MGP_C57BL6NJ_P0080973 Klra5 protein_coding protein_coding MGP_C57BL6NJ_T0080974.1 MGP_C57BL6NJ_G0031799.1 mouse_genomes_project 6 137213231 137226791 - MGP_C57BL6NJ_P0080974 Klra5 protein_coding protein_coding MGP_C57BL6NJ_T0081150.1 MGP_C57BL6NJ_G0031866.1 mouse_genomes_project 6 144919139 144972306 - MGP_C57BL6NJ_P0081150 Plbd1 protein_coding protein_coding MGP_C57BL6NJ_T0081151.1 MGP_C57BL6NJ_G0031866.1 mouse_genomes_project 6 144920372 144972251 - Plbd1 protein_coding retained_intron MGP_C57BL6NJ_T0081152.1 MGP_C57BL6NJ_G0031866.1 mouse_genomes_project 6 144920945 144945222 - Plbd1 protein_coding retained_intron MGP_C57BL6NJ_T0081153.1 MGP_C57BL6NJ_G0031866.1 mouse_genomes_project 6 144950780 144971941 - MGP_C57BL6NJ_P0081153 Plbd1 protein_coding protein_coding MGP_C57BL6NJ_T0015676.1 MGP_C57BL6NJ_G0013721.1 mouse_genomes_project 6 20744261 20745037 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008911.1 MGP_C57BL6NJ_G0007204.1 mouse_genomes_project 6 134201594 134214260 - Gm38404 lincRNA lincRNA MGP_C57BL6NJ_T0077452.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37052406 37103576 + Trim24 protein_coding retained_intron MGP_C57BL6NJ_T0077453.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37052406 37130145 + Trim24 protein_coding retained_intron MGP_C57BL6NJ_T0077454.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37052406 37155737 + MGP_C57BL6NJ_P0077454 Trim24 protein_coding protein_coding MGP_C57BL6NJ_T0077455.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37052406 37155737 + MGP_C57BL6NJ_P0077455 Trim24 protein_coding protein_coding MGP_C57BL6NJ_T0077456.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37057925 37113489 + Trim24 protein_coding processed_transcript MGP_C57BL6NJ_T0077457.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37082736 37155373 + MGP_C57BL6NJ_P0077457 Trim24 protein_coding protein_coding MGP_C57BL6NJ_T0077458.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37097470 37110018 + Trim24 protein_coding retained_intron MGP_C57BL6NJ_T0077459.1 MGP_C57BL6NJ_G0031015.1 mouse_genomes_project 6 37131904 37139406 + Trim24 protein_coding retained_intron MGP_C57BL6NJ_T0011014.1 MGP_C57BL6NJ_G0009099.1 mouse_genomes_project 6 37739146 37739215 + Mir7670 miRNA miRNA MGP_C57BL6NJ_T0011896.1 MGP_C57BL6NJ_G0009981.1 mouse_genomes_project 6 28804252 28804579 - Gm25580 misc_RNA misc_RNA MGP_C57BL6NJ_T0077718.1 MGP_C57BL6NJ_G0031093.1 mouse_genomes_project 6 42091089 42092043 - MGP_C57BL6NJ_P0077718 Olfr455 protein_coding protein_coding MGP_C57BL6NJ_T0101839.1 MGP_C57BL6NJ_G0039885.1 mouse_genomes_project 6 143273014 143273148 + Gm22881 snoRNA snoRNA MGP_C57BL6NJ_T0077800.1 MGP_C57BL6NJ_G0031120.1 mouse_genomes_project 6 47721283 47738573 - MGP_C57BL6NJ_P0077800 Pdia4 protein_coding protein_coding MGP_C57BL6NJ_T0077801.1 MGP_C57BL6NJ_G0031120.1 mouse_genomes_project 6 47732155 47738507 - Pdia4 protein_coding processed_transcript MGP_C57BL6NJ_T0101812.1 MGP_C57BL6NJ_G0039858.1 mouse_genomes_project 6 97459914 97460045 - Gm25094 snoRNA snoRNA MGP_C57BL6NJ_T0015819.1 MGP_C57BL6NJ_G0013864.1 mouse_genomes_project 6 68576979 68577366 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080778.1 MGP_C57BL6NJ_G0031745.1 mouse_genomes_project 6 133898995 133913291 + MGP_C57BL6NJ_P0080778 Fgf6 protein_coding protein_coding MGP_C57BL6NJ_T0080400.1 MGP_C57BL6NJ_G0031667.1 mouse_genomes_project 6 129004908 129009591 - MGP_C57BL6NJ_P0080400 Gdf3 protein_coding protein_coding MGP_C57BL6NJ_T0080401.1 MGP_C57BL6NJ_G0031667.1 mouse_genomes_project 6 129007530 129009328 - Gdf3 protein_coding processed_transcript MGP_C57BL6NJ_T0077714.1 MGP_C57BL6NJ_G0031089.1 mouse_genomes_project 6 41982466 41983396 + MGP_C57BL6NJ_P0077714 Tas2r126 protein_coding protein_coding MGP_C57BL6NJ_T0077627.1 MGP_C57BL6NJ_G0031055.1 mouse_genomes_project 6 40364777 40369886 - MGP_C57BL6NJ_P0077627 Prss58 protein_coding protein_coding MGP_C57BL6NJ_T0002302.1 MGP_C57BL6NJ_G0002192.1 mouse_genomes_project 6 144932774 144935149 + TEC TEC MGP_C57BL6NJ_T0005168.1 MGP_C57BL6NJ_G0004419.1 mouse_genomes_project 6 90029184 90031932 - Gm44941 antisense antisense MGP_C57BL6NJ_T0005167.1 MGP_C57BL6NJ_G0004418.1 mouse_genomes_project 6 89725389 89728104 - Gm44089 antisense antisense MGP_C57BL6NJ_T0015768.1 MGP_C57BL6NJ_G0013813.1 mouse_genomes_project 6 53639474 53640660 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081329.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151053054 151100964 - MGP_C57BL6NJ_P0081329 Slco1a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081330.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151053054 151153924 - MGP_C57BL6NJ_P0081330 Slco1a5 protein_coding protein_coding MGP_C57BL6NJ_T0081331.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151053054 151104228 - MGP_C57BL6NJ_P0081331 Slco1a5 protein_coding protein_coding MGP_C57BL6NJ_T0081332.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151053489 151100914 - MGP_C57BL6NJ_P0081332 Slco1a5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0081333.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151066771 151104228 - Slco1a5 protein_coding retained_intron MGP_C57BL6NJ_T0081334.1 MGP_C57BL6NJ_G0031903.1 mouse_genomes_project 6 151074292 151153891 - MGP_C57BL6NJ_P0081334 Slco1a5 protein_coding protein_coding MGP_C57BL6NJ_T0008790.1 MGP_C57BL6NJ_G0007104.1 mouse_genomes_project 6 56028234 56044871 + 6430584L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0008907.1 MGP_C57BL6NJ_G0007200.1 mouse_genomes_project 6 130936195 130938839 + Gm44006 lincRNA lincRNA MGP_C57BL6NJ_T0079654.1 MGP_C57BL6NJ_G0031535.1 mouse_genomes_project 6 111854905 111874779 - MGP_C57BL6NJ_P0079654 Crbn protein_coding protein_coding MGP_C57BL6NJ_T0079655.1 MGP_C57BL6NJ_G0031535.1 mouse_genomes_project 6 111854905 111874770 - MGP_C57BL6NJ_P0079655 Crbn protein_coding protein_coding MGP_C57BL6NJ_T0079656.1 MGP_C57BL6NJ_G0031535.1 mouse_genomes_project 6 111858174 111873738 - MGP_C57BL6NJ_P0079656 Crbn protein_coding protein_coding MGP_C57BL6NJ_T0079657.1 MGP_C57BL6NJ_G0031535.1 mouse_genomes_project 6 111863452 111874766 - Crbn protein_coding retained_intron MGP_C57BL6NJ_T0079658.1 MGP_C57BL6NJ_G0031535.1 mouse_genomes_project 6 111871884 111874782 - Crbn protein_coding retained_intron MGP_C57BL6NJ_T0016103.1 MGP_C57BL6NJ_G0014148.1 mouse_genomes_project 6 158307785 158308720 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005195.1 MGP_C57BL6NJ_G0004434.1 mouse_genomes_project 6 94663099 94664198 + Gm44123 antisense antisense MGP_C57BL6NJ_T0005248.1 MGP_C57BL6NJ_G0004473.1 mouse_genomes_project 6 133696811 133699612 + Gm42574 antisense antisense MGP_C57BL6NJ_T0000416.1 MGP_C57BL6NJ_G0000335.1 mouse_genomes_project 6 70364437 70364736 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015870.1 MGP_C57BL6NJ_G0013915.1 mouse_genomes_project 6 82533121 82533881 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016039.1 MGP_C57BL6NJ_G0014084.1 mouse_genomes_project 6 138058537 138058760 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080903.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136183283 136195466 + MGP_C57BL6NJ_P0080903 Klrb1f protein_coding protein_coding MGP_C57BL6NJ_T0080904.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136183283 136195466 + MGP_C57BL6NJ_P0080904 Klrb1f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080905.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136183302 136194711 + MGP_C57BL6NJ_P0080905 Klrb1f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080906.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136183307 136190975 + Klrb1f protein_coding retained_intron MGP_C57BL6NJ_T0080907.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136183309 136192048 + MGP_C57BL6NJ_P0080907 Klrb1f protein_coding protein_coding MGP_C57BL6NJ_T0080908.1 MGP_C57BL6NJ_G0031776.1 mouse_genomes_project 6 136186716 136192054 + Klrb1f protein_coding processed_transcript MGP_C57BL6NJ_T0000462.1 MGP_C57BL6NJ_G0000381.1 mouse_genomes_project 6 72923186 72923804 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101838.1 MGP_C57BL6NJ_G0039884.1 mouse_genomes_project 6 138929771 138929905 - Gm22362 snoRNA snoRNA MGP_C57BL6NJ_T0015829.1 MGP_C57BL6NJ_G0013874.1 mouse_genomes_project 6 69254830 69255885 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002114.1 MGP_C57BL6NJ_G0002005.1 mouse_genomes_project 6 45943253 45945772 + TEC TEC MGP_C57BL6NJ_T0008854.1 MGP_C57BL6NJ_G0007155.1 mouse_genomes_project 6 94417203 94418961 - Gm44117 lincRNA lincRNA MGP_C57BL6NJ_T0077975.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50397136 50401764 - Dfna5 protein_coding retained_intron MGP_C57BL6NJ_T0077976.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50397617 50475025 - MGP_C57BL6NJ_P0077976 Dfna5 protein_coding protein_coding MGP_C57BL6NJ_T0077978.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50408346 50475017 - MGP_C57BL6NJ_P0077978 Dfna5 protein_coding protein_coding MGP_C57BL6NJ_T0077979.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50415523 50477132 - MGP_C57BL6NJ_P0077979 Dfna5 protein_coding protein_coding MGP_C57BL6NJ_T0077980.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50415525 50475039 - MGP_C57BL6NJ_P0077980 Dfna5 protein_coding protein_coding MGP_C57BL6NJ_T0077981.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50455977 50475296 - MGP_C57BL6NJ_P0077981 Dfna5 protein_coding protein_coding MGP_C57BL6NJ_T0077982.1 MGP_C57BL6NJ_G0031164.1 mouse_genomes_project 6 50472650 50475245 - Dfna5 protein_coding retained_intron MGP_C57BL6NJ_T0080453.1 MGP_C57BL6NJ_G0031684.1 mouse_genomes_project 6 130187223 130232077 + MGP_C57BL6NJ_P0080453 Vmn2r23 protein_coding protein_coding MGP_C57BL6NJ_T0077835.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48486900 48503219 - MGP_C57BL6NJ_P0077835 Zfp467 protein_coding protein_coding MGP_C57BL6NJ_T0077836.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48486900 48504456 - MGP_C57BL6NJ_P0077836 Zfp467 protein_coding protein_coding MGP_C57BL6NJ_T0077837.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48486900 48504559 - MGP_C57BL6NJ_P0077837 Zfp467 protein_coding protein_coding MGP_C57BL6NJ_T0077838.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48493353 48504365 - MGP_C57BL6NJ_P0077838 Zfp467 protein_coding protein_coding MGP_C57BL6NJ_T0077839.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48495830 48503393 - MGP_C57BL6NJ_P0077839 Zfp467 protein_coding protein_coding MGP_C57BL6NJ_T0077840.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48498601 48504350 - MGP_C57BL6NJ_P0077840 Zfp467 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077841.1 MGP_C57BL6NJ_G0031129.1 mouse_genomes_project 6 48501946 48504486 - Zfp467 protein_coding retained_intron MGP_C57BL6NJ_T0015663.1 MGP_C57BL6NJ_G0013708.1 mouse_genomes_project 6 15917928 15919267 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081189.1 MGP_C57BL6NJ_G0031878.1 mouse_genomes_project 6 145407468 145527259 - MGP_C57BL6NJ_P0081189 Rerg protein_coding protein_coding MGP_C57BL6NJ_T0081190.1 MGP_C57BL6NJ_G0031878.1 mouse_genomes_project 6 145407474 145526494 - MGP_C57BL6NJ_P0081190 Rerg protein_coding protein_coding MGP_C57BL6NJ_T0081191.1 MGP_C57BL6NJ_G0031878.1 mouse_genomes_project 6 145408742 145526447 - MGP_C57BL6NJ_P0081191 Rerg protein_coding protein_coding MGP_C57BL6NJ_T0081192.1 MGP_C57BL6NJ_G0031878.1 mouse_genomes_project 6 145409032 145495040 - MGP_C57BL6NJ_P0081192 Rerg protein_coding protein_coding MGP_C57BL6NJ_T0081193.1 MGP_C57BL6NJ_G0031878.1 mouse_genomes_project 6 145473234 145526470 - MGP_C57BL6NJ_P0081193 Rerg protein_coding protein_coding MGP_C57BL6NJ_T0002187.1 MGP_C57BL6NJ_G0002078.1 mouse_genomes_project 6 90169363 90172347 + TEC TEC MGP_C57BL6NJ_T0080801.1 MGP_C57BL6NJ_G0031751.1 mouse_genomes_project 6 134650796 134735350 - MGP_C57BL6NJ_P0080801 Prmt8 protein_coding protein_coding MGP_C57BL6NJ_T0016001.1 MGP_C57BL6NJ_G0014046.1 mouse_genomes_project 6 130398880 130399730 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002883.1 MGP_C57BL6NJ_G0002737.1 mouse_genomes_project 6 40710318 40710595 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0078695.1 MGP_C57BL6NJ_G0031348.1 mouse_genomes_project 6 86313088 86315626 - MGP_C57BL6NJ_P0078695 Dok1 protein_coding protein_coding MGP_C57BL6NJ_T0078696.1 MGP_C57BL6NJ_G0031348.1 mouse_genomes_project 6 86313094 86315623 - MGP_C57BL6NJ_P0078696 Dok1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078697.1 MGP_C57BL6NJ_G0031348.1 mouse_genomes_project 6 86314005 86314716 - MGP_C57BL6NJ_P0078697 Dok1 protein_coding protein_coding MGP_C57BL6NJ_T0079505.1 MGP_C57BL6NJ_G0031506.1 mouse_genomes_project 6 99536595 99536694 + MGP_C57BL6NJ_P0079505 Gm10234 protein_coding protein_coding MGP_C57BL6NJ_T0005152.1 MGP_C57BL6NJ_G0004410.1 mouse_genomes_project 6 86413174 86415052 + Gm44287 antisense antisense MGP_C57BL6NJ_T0016019.1 MGP_C57BL6NJ_G0014064.1 mouse_genomes_project 6 135190863 135194464 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015922.1 MGP_C57BL6NJ_G0013967.1 mouse_genomes_project 6 105258999 105259421 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011008.1 MGP_C57BL6NJ_G0009093.1 mouse_genomes_project 6 29470715 29470813 + Mir335 miRNA miRNA MGP_C57BL6NJ_T0080924.1 MGP_C57BL6NJ_G0031783.1 mouse_genomes_project 6 136562690 136570296 + MGP_C57BL6NJ_P0080924 Clec1b protein_coding protein_coding MGP_C57BL6NJ_T0080925.1 MGP_C57BL6NJ_G0031783.1 mouse_genomes_project 6 136562698 136570284 + MGP_C57BL6NJ_P0080925 Clec1b protein_coding protein_coding MGP_C57BL6NJ_T0080926.1 MGP_C57BL6NJ_G0031783.1 mouse_genomes_project 6 136568633 136575726 + Clec1b protein_coding retained_intron MGP_C57BL6NJ_T0101805.1 MGP_C57BL6NJ_G0039851.1 mouse_genomes_project 6 74294441 74294578 - Gm22486 snoRNA snoRNA MGP_C57BL6NJ_T0002208.1 MGP_C57BL6NJ_G0002099.1 mouse_genomes_project 6 92346097 92347092 + TEC TEC MGP_C57BL6NJ_T0015967.1 MGP_C57BL6NJ_G0014012.1 mouse_genomes_project 6 120761176 120762011 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011885.1 MGP_C57BL6NJ_G0009970.1 mouse_genomes_project 6 8200025 8200117 + Gm27894 misc_RNA misc_RNA MGP_C57BL6NJ_T0015720.1 MGP_C57BL6NJ_G0013765.1 mouse_genomes_project 6 40762386 40762949 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008789.1 MGP_C57BL6NJ_G0007103.1 mouse_genomes_project 6 55768216 55780957 + Gm43995 lincRNA lincRNA MGP_C57BL6NJ_T0015708.1 MGP_C57BL6NJ_G0013753.1 mouse_genomes_project 6 36844396 36845353 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080714.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132099143 132099817 + Tnfrsf1a protein_coding processed_transcript MGP_C57BL6NJ_T0080715.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132099232 132107138 + MGP_C57BL6NJ_P0080715 Tnfrsf1a protein_coding protein_coding MGP_C57BL6NJ_T0080716.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132099504 132112306 + MGP_C57BL6NJ_P0080716 Tnfrsf1a protein_coding protein_coding MGP_C57BL6NJ_T0080717.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132107192 132110927 + MGP_C57BL6NJ_P0080717 Tnfrsf1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080718.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132107586 132111600 + MGP_C57BL6NJ_P0080718 Tnfrsf1a protein_coding protein_coding MGP_C57BL6NJ_T0080719.1 MGP_C57BL6NJ_G0031731.1 mouse_genomes_project 6 132110248 132111696 + Tnfrsf1a protein_coding retained_intron MGP_C57BL6NJ_T0102503.1 MGP_C57BL6NJ_G0040371.1 mouse_genomes_project 6 42671679 42711926 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102504.1 MGP_C57BL6NJ_G0040371.1 mouse_genomes_project 6 42710224 42711691 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0015914.1 MGP_C57BL6NJ_G0013959.1 mouse_genomes_project 6 100273127 100273494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011940.1 MGP_C57BL6NJ_G0010025.1 mouse_genomes_project 6 154330207 154330537 - Gm22793 misc_RNA misc_RNA MGP_C57BL6NJ_T0015814.1 MGP_C57BL6NJ_G0013859.1 mouse_genomes_project 6 68047656 68048305 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103291.1 MGP_C57BL6NJ_G0041084.1 mouse_genomes_project 6 137664273 137693982 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002080.1 MGP_C57BL6NJ_G0001971.1 mouse_genomes_project 6 28132007 28133787 - TEC TEC MGP_C57BL6NJ_T0005270.1 MGP_C57BL6NJ_G0004492.1 mouse_genomes_project 6 144403675 144408885 + antisense antisense MGP_C57BL6NJ_T0080186.1 MGP_C57BL6NJ_G0031631.1 mouse_genomes_project 6 125261310 125339171 - MGP_C57BL6NJ_P0080186 Adipor2 protein_coding protein_coding MGP_C57BL6NJ_T0080187.1 MGP_C57BL6NJ_G0031631.1 mouse_genomes_project 6 125261925 125308365 - MGP_C57BL6NJ_P0080187 Adipor2 protein_coding protein_coding MGP_C57BL6NJ_T0080188.1 MGP_C57BL6NJ_G0031631.1 mouse_genomes_project 6 125263668 125310795 - MGP_C57BL6NJ_P0080188 Adipor2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080189.1 MGP_C57BL6NJ_G0031631.1 mouse_genomes_project 6 125265888 125339157 - Adipor2 protein_coding retained_intron MGP_C57BL6NJ_T0080190.1 MGP_C57BL6NJ_G0031631.1 mouse_genomes_project 6 125287400 125338942 - MGP_C57BL6NJ_P0080190 Adipor2 protein_coding protein_coding MGP_C57BL6NJ_T0080564.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131519923 131523022 + MGP_C57BL6NJ_P0080564 Cdca3 protein_coding protein_coding MGP_C57BL6NJ_T0080565.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131520064 131524059 + MGP_C57BL6NJ_P0080565 Cdca3 protein_coding protein_coding MGP_C57BL6NJ_T0080566.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131520593 131522943 + MGP_C57BL6NJ_P0080566 Cdca3 protein_coding protein_coding MGP_C57BL6NJ_T0080567.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131520611 131523890 + Cdca3 protein_coding retained_intron MGP_C57BL6NJ_T0080568.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131520739 131522390 + Cdca3 protein_coding retained_intron MGP_C57BL6NJ_T0080569.1 MGP_C57BL6NJ_G0031705.1 mouse_genomes_project 6 131520751 131522797 + MGP_C57BL6NJ_P0080569 Cdca3 protein_coding protein_coding MGP_C57BL6NJ_T0002240.1 MGP_C57BL6NJ_G0002131.1 mouse_genomes_project 6 105433630 105435714 + TEC TEC MGP_C57BL6NJ_T0002824.1 MGP_C57BL6NJ_G0002687.1 mouse_genomes_project 6 40627212 40627707 + MGP_C57BL6NJ_P0002824 Trbv17 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0080194.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125525152 125816030 - MGP_C57BL6NJ_P0080194 Erc1 protein_coding protein_coding MGP_C57BL6NJ_T0080195.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125525160 125783231 - MGP_C57BL6NJ_P0080195 Erc1 protein_coding protein_coding MGP_C57BL6NJ_T0080196.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125526986 125815979 - MGP_C57BL6NJ_P0080196 Erc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080197.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125528084 125815939 - MGP_C57BL6NJ_P0080197 Erc1 protein_coding protein_coding MGP_C57BL6NJ_T0080198.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125528933 125815995 - MGP_C57BL6NJ_P0080198 Erc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080199.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125529369 125699999 - MGP_C57BL6NJ_P0080199 Erc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080200.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125529601 125816014 - MGP_C57BL6NJ_P0080200 Erc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080201.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125529671 125816047 - MGP_C57BL6NJ_P0080201 Erc1 protein_coding protein_coding MGP_C57BL6NJ_T0080202.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125529886 125815969 - MGP_C57BL6NJ_P0080202 Erc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080203.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125572806 125578989 - Erc1 protein_coding retained_intron MGP_C57BL6NJ_T0080204.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125573957 125815999 - MGP_C57BL6NJ_P0080204 Erc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080205.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125676212 125753991 - Erc1 protein_coding processed_transcript MGP_C57BL6NJ_T0080206.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125728754 125815982 - MGP_C57BL6NJ_P0080206 Erc1 protein_coding protein_coding MGP_C57BL6NJ_T0080207.1 MGP_C57BL6NJ_G0031634.1 mouse_genomes_project 6 125781989 125784465 - Erc1 protein_coding retained_intron MGP_C57BL6NJ_T0077873.1 MGP_C57BL6NJ_G0031138.1 mouse_genomes_project 6 48670494 48691524 + MGP_C57BL6NJ_P0077873 Zfp775 protein_coding protein_coding MGP_C57BL6NJ_T0077874.1 MGP_C57BL6NJ_G0031138.1 mouse_genomes_project 6 48673969 48688108 + MGP_C57BL6NJ_P0077874 Zfp775 protein_coding protein_coding MGP_C57BL6NJ_T0077875.1 MGP_C57BL6NJ_G0031138.1 mouse_genomes_project 6 48681545 48691524 + MGP_C57BL6NJ_P0077875 Zfp775 protein_coding protein_coding MGP_C57BL6NJ_T0015857.1 MGP_C57BL6NJ_G0013902.1 mouse_genomes_project 6 76031689 76032113 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078977.1 MGP_C57BL6NJ_G0031399.1 mouse_genomes_project 6 89426399 89428094 - MGP_C57BL6NJ_P0078977 Nat8 protein_coding protein_coding MGP_C57BL6NJ_T0079659.1 MGP_C57BL6NJ_G0031536.1 mouse_genomes_project 6 112662319 112702819 + MGP_C57BL6NJ_P0079659 Lrrn1 protein_coding protein_coding MGP_C57BL6NJ_T0008824.1 MGP_C57BL6NJ_G0007135.1 mouse_genomes_project 6 86077967 86095919 + Gm43878 lincRNA lincRNA MGP_C57BL6NJ_T0008825.1 MGP_C57BL6NJ_G0007135.1 mouse_genomes_project 6 86087071 86095931 + Gm43878 lincRNA lincRNA MGP_C57BL6NJ_T0008826.1 MGP_C57BL6NJ_G0007135.1 mouse_genomes_project 6 86087106 86100216 + Gm43878 lincRNA lincRNA MGP_C57BL6NJ_T0005274.1 MGP_C57BL6NJ_G0004494.1 mouse_genomes_project 6 146926946 146947119 + Gm30332 antisense antisense MGP_C57BL6NJ_T0016054.1 MGP_C57BL6NJ_G0014099.1 mouse_genomes_project 6 139705130 139705611 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016028.1 MGP_C57BL6NJ_G0014073.1 mouse_genomes_project 6 135717224 135717714 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103256.1 MGP_C57BL6NJ_G0041050.1 mouse_genomes_project 6 58967922 58968816 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078230.1 MGP_C57BL6NJ_G0031226.1 mouse_genomes_project 6 57878004 57879119 + MGP_C57BL6NJ_P0078230 Vmn1r10 protein_coding protein_coding MGP_C57BL6NJ_T0080862.1 MGP_C57BL6NJ_G0031766.1 mouse_genomes_project 6 135599962 135603489 - BC048546 protein_coding retained_intron MGP_C57BL6NJ_T0080863.1 MGP_C57BL6NJ_G0031766.1 mouse_genomes_project 6 135599968 135643309 - MGP_C57BL6NJ_P0080863 BC048546 protein_coding protein_coding MGP_C57BL6NJ_T0080864.1 MGP_C57BL6NJ_G0031766.1 mouse_genomes_project 6 135608459 135613273 - BC048546 protein_coding retained_intron MGP_C57BL6NJ_T0080865.1 MGP_C57BL6NJ_G0031766.1 mouse_genomes_project 6 135618210 135619440 - BC048546 protein_coding retained_intron MGP_C57BL6NJ_T0080866.1 MGP_C57BL6NJ_G0031766.1 mouse_genomes_project 6 135635884 135638447 - BC048546 protein_coding retained_intron MGP_C57BL6NJ_T0076702.1 MGP_C57BL6NJ_G0030872.1 mouse_genomes_project 6 2277713 2328778 + MGP_C57BL6NJ_P0076702 Asb4 protein_coding protein_coding MGP_C57BL6NJ_T0076703.1 MGP_C57BL6NJ_G0030872.1 mouse_genomes_project 6 2284753 2296576 + MGP_C57BL6NJ_P0076703 Asb4 protein_coding protein_coding MGP_C57BL6NJ_T0101809.1 MGP_C57BL6NJ_G0039855.1 mouse_genomes_project 6 87219528 87219658 - Gm23014 snoRNA snoRNA MGP_C57BL6NJ_T0103257.1 MGP_C57BL6NJ_G0041051.1 mouse_genomes_project 6 59077524 59084930 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000236.1 MGP_C57BL6NJ_G0000176.1 mouse_genomes_project 6 70775922 70776384 - MGP_C57BL6NJ_P0000236 Igkv12-89 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000237.1 MGP_C57BL6NJ_G0000176.1 mouse_genomes_project 6 70775922 70776384 - MGP_C57BL6NJ_P0000237 Igkv12-89 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0079193.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91763756 91818603 - MGP_C57BL6NJ_P0079193 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079194.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91763767 91818350 - MGP_C57BL6NJ_P0079194 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079195.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91765051 91787395 - MGP_C57BL6NJ_P0079195 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079196.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91765413 91818578 - MGP_C57BL6NJ_P0079196 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079197.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91765548 91787395 - MGP_C57BL6NJ_P0079197 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079198.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91765970 91818531 - MGP_C57BL6NJ_P0079198 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0079199.1 MGP_C57BL6NJ_G0031441.1 mouse_genomes_project 6 91770702 91818564 - MGP_C57BL6NJ_P0079199 Rab7 protein_coding protein_coding MGP_C57BL6NJ_T0000397.1 MGP_C57BL6NJ_G0000316.1 mouse_genomes_project 6 69353181 69353678 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011066.1 MGP_C57BL6NJ_G0009151.1 mouse_genomes_project 6 131964761 131964890 - Mir8113 miRNA miRNA MGP_C57BL6NJ_T0018755.1 MGP_C57BL6NJ_G0016033.1 mouse_genomes_project 6 86771502 86778067 + B230319C09Rik processed_transcript antisense MGP_C57BL6NJ_T0018756.1 MGP_C57BL6NJ_G0016033.1 mouse_genomes_project 6 86771557 86775105 + B230319C09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018757.1 MGP_C57BL6NJ_G0016033.1 mouse_genomes_project 6 86771559 86772388 + B230319C09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0008678.1 MGP_C57BL6NJ_G0007029.1 mouse_genomes_project 6 3437223 3473247 - Gm20617 lincRNA lincRNA MGP_C57BL6NJ_T0008679.1 MGP_C57BL6NJ_G0007029.1 mouse_genomes_project 6 3437627 3473413 - Gm20617 lincRNA lincRNA MGP_C57BL6NJ_T0078034.1 MGP_C57BL6NJ_G0031176.1 mouse_genomes_project 6 52536332 52590783 - MGP_C57BL6NJ_P0078034 Gm28308 protein_coding protein_coding MGP_C57BL6NJ_T0015855.1 MGP_C57BL6NJ_G0013900.1 mouse_genomes_project 6 75505709 75506295 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008891.1 MGP_C57BL6NJ_G0007186.1 mouse_genomes_project 6 123283711 123288438 + Gm43983 lincRNA lincRNA MGP_C57BL6NJ_T0078375.1 MGP_C57BL6NJ_G0031276.1 mouse_genomes_project 6 68179718 68181974 - MGP_C57BL6NJ_P0078375 protein_coding protein_coding MGP_C57BL6NJ_T0079094.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90555886 90721261 + MGP_C57BL6NJ_P0079094 Aak1 protein_coding protein_coding MGP_C57BL6NJ_T0079095.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90555901 90650739 + MGP_C57BL6NJ_P0079095 Aak1 protein_coding protein_coding MGP_C57BL6NJ_T0079096.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90555997 90667919 + Aak1 protein_coding retained_intron MGP_C57BL6NJ_T0079097.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90556422 90709902 + MGP_C57BL6NJ_P0079097 Aak1 protein_coding protein_coding MGP_C57BL6NJ_T0079098.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90557554 90650734 + Aak1 protein_coding processed_transcript MGP_C57BL6NJ_T0079099.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90676050 90713933 + MGP_C57BL6NJ_P0079099 Aak1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079100.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90685391 90714256 + Aak1 protein_coding processed_transcript MGP_C57BL6NJ_T0079101.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90703308 90706076 + Aak1 protein_coding retained_intron MGP_C57BL6NJ_T0079102.1 MGP_C57BL6NJ_G0031420.1 mouse_genomes_project 6 90713047 90714712 + Aak1 protein_coding processed_transcript MGP_C57BL6NJ_T0008764.1 MGP_C57BL6NJ_G0007085.1 mouse_genomes_project 6 48888943 48889490 - Gm44019 lincRNA lincRNA MGP_C57BL6NJ_T0100527.1 MGP_C57BL6NJ_G0038573.1 mouse_genomes_project 6 67473928 67474028 - Gm23625 snRNA snRNA MGP_C57BL6NJ_T0018765.1 MGP_C57BL6NJ_G0016036.1 mouse_genomes_project 6 122061300 122063530 - Gm44957 processed_transcript retained_intron MGP_C57BL6NJ_T0018766.1 MGP_C57BL6NJ_G0016036.1 mouse_genomes_project 6 122061315 122064017 - Gm44957 processed_transcript bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0080878.1 MGP_C57BL6NJ_G0031770.1 mouse_genomes_project 6 135885855 135907959 - MGP_C57BL6NJ_P0080878 Klrb1c protein_coding protein_coding MGP_C57BL6NJ_T0080879.1 MGP_C57BL6NJ_G0031770.1 mouse_genomes_project 6 135886829 135907959 - MGP_C57BL6NJ_P0080879 Klrb1c protein_coding protein_coding MGP_C57BL6NJ_T0080880.1 MGP_C57BL6NJ_G0031770.1 mouse_genomes_project 6 135887413 135907804 - MGP_C57BL6NJ_P0080880 Klrb1c protein_coding protein_coding MGP_C57BL6NJ_T0080885.1 MGP_C57BL6NJ_G0031770.1 mouse_genomes_project 6 135903985 135908533 - MGP_C57BL6NJ_P0080885 Klrb1c protein_coding protein_coding MGP_C57BL6NJ_T0002326.1 MGP_C57BL6NJ_G0002216.1 mouse_genomes_project 6 157353858 157357337 + TEC TEC MGP_C57BL6NJ_T0005279.1 MGP_C57BL6NJ_G0004499.1 mouse_genomes_project 6 152932670 152934541 + Sox5os1 antisense antisense MGP_C57BL6NJ_T0080428.1 MGP_C57BL6NJ_G0031677.1 mouse_genomes_project 6 129502578 129539085 + MGP_C57BL6NJ_P0080428 Clec4b1 protein_coding protein_coding MGP_C57BL6NJ_T0080429.1 MGP_C57BL6NJ_G0031677.1 mouse_genomes_project 6 129502614 129539096 + MGP_C57BL6NJ_P0080429 Clec4b1 protein_coding protein_coding MGP_C57BL6NJ_T0100520.1 MGP_C57BL6NJ_G0038566.1 mouse_genomes_project 6 41871583 41871690 - Gm24611 snRNA snRNA MGP_C57BL6NJ_T0002093.1 MGP_C57BL6NJ_G0001984.1 mouse_genomes_project 6 39496925 39500991 + TEC TEC MGP_C57BL6NJ_T0002161.1 MGP_C57BL6NJ_G0002052.1 mouse_genomes_project 6 80301681 80306513 - TEC TEC MGP_C57BL6NJ_T0000430.1 MGP_C57BL6NJ_G0000349.1 mouse_genomes_project 6 71110757 71111299 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0018710.1 MGP_C57BL6NJ_G0016018.1 mouse_genomes_project 6 38862133 38875839 + 8030453O22Rik processed_transcript antisense MGP_C57BL6NJ_T0018711.1 MGP_C57BL6NJ_G0016018.1 mouse_genomes_project 6 38862142 38878996 + 8030453O22Rik processed_transcript antisense MGP_C57BL6NJ_T0018712.1 MGP_C57BL6NJ_G0016018.1 mouse_genomes_project 6 38862146 38862895 + 8030453O22Rik processed_transcript retained_intron MGP_C57BL6NJ_T0077387.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33790395 33800290 + Tmem140 protein_coding processed_transcript MGP_C57BL6NJ_T0077388.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33790395 33803649 + MGP_C57BL6NJ_P0077388 Tmem140 protein_coding protein_coding MGP_C57BL6NJ_T0077389.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33790511 33801316 + MGP_C57BL6NJ_P0077389 Tmem140 protein_coding protein_coding MGP_C57BL6NJ_T0077390.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33795698 33797528 + Tmem140 protein_coding processed_transcript MGP_C57BL6NJ_T0077391.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33795730 33801441 + MGP_C57BL6NJ_P0077391 Tmem140 protein_coding protein_coding MGP_C57BL6NJ_T0077394.1 MGP_C57BL6NJ_G0031000.1 mouse_genomes_project 6 33801416 33802258 + Tmem140 protein_coding processed_transcript MGP_C57BL6NJ_T0002248.1 MGP_C57BL6NJ_G0002139.1 mouse_genomes_project 6 106633188 106635855 + TEC TEC MGP_C57BL6NJ_T0008777.1 MGP_C57BL6NJ_G0007095.1 mouse_genomes_project 6 52031612 52048389 - Gm44191 lincRNA lincRNA MGP_C57BL6NJ_T0002191.1 MGP_C57BL6NJ_G0002082.1 mouse_genomes_project 6 90571251 90573703 + TEC TEC MGP_C57BL6NJ_T0080391.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128972271 129001738 - MGP_C57BL6NJ_P0080391 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080392.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128972278 128999421 - MGP_C57BL6NJ_P0080392 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080393.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128972280 129001665 - MGP_C57BL6NJ_P0080393 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080394.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128977143 129001681 - MGP_C57BL6NJ_P0080394 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080395.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128977169 128999652 - MGP_C57BL6NJ_P0080395 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080396.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128977351 129001623 - MGP_C57BL6NJ_P0080396 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080397.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128986679 129001664 - MGP_C57BL6NJ_P0080397 Apobec1 protein_coding protein_coding MGP_C57BL6NJ_T0080398.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128987410 129001658 - Apobec1 protein_coding retained_intron MGP_C57BL6NJ_T0080399.1 MGP_C57BL6NJ_G0031666.1 mouse_genomes_project 6 128995932 128999732 - Apobec1 protein_coding retained_intron MGP_C57BL6NJ_T0016013.1 MGP_C57BL6NJ_G0014058.1 mouse_genomes_project 6 134080687 134080997 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077060.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27010252 27441595 + MGP_C57BL6NJ_P0077060 Snd1 protein_coding protein_coding MGP_C57BL6NJ_T0077061.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27010252 27430511 + MGP_C57BL6NJ_P0077061 Snd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077062.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27010263 27487542 + MGP_C57BL6NJ_P0077062 Snd1 protein_coding protein_coding MGP_C57BL6NJ_T0077063.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27010333 27012753 + Snd1 protein_coding retained_intron MGP_C57BL6NJ_T0077064.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27010469 27342922 + MGP_C57BL6NJ_P0077064 Snd1 protein_coding protein_coding MGP_C57BL6NJ_T0077065.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27097304 27266844 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077067.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27246790 27248969 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077068.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27247601 27266854 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077069.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27307764 27427775 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077070.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27319549 27433021 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077072.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27401710 27433096 + Snd1 protein_coding processed_transcript MGP_C57BL6NJ_T0077073.1 MGP_C57BL6NJ_G0030948.1 mouse_genomes_project 6 27432830 27439290 + Snd1 protein_coding retained_intron MGP_C57BL6NJ_T0081180.1 MGP_C57BL6NJ_G0031876.1 mouse_genomes_project 6 145268299 145289006 - MGP_C57BL6NJ_P0081180 Arhgdib protein_coding protein_coding MGP_C57BL6NJ_T0081181.1 MGP_C57BL6NJ_G0031876.1 mouse_genomes_project 6 145268299 145289256 - MGP_C57BL6NJ_P0081181 Arhgdib protein_coding protein_coding MGP_C57BL6NJ_T0081183.1 MGP_C57BL6NJ_G0031876.1 mouse_genomes_project 6 145268645 145289392 - MGP_C57BL6NJ_P0081183 Arhgdib protein_coding protein_coding MGP_C57BL6NJ_T0081184.1 MGP_C57BL6NJ_G0031876.1 mouse_genomes_project 6 145268856 145289361 - MGP_C57BL6NJ_P0081184 Arhgdib protein_coding protein_coding MGP_C57BL6NJ_T0081185.1 MGP_C57BL6NJ_G0031876.1 mouse_genomes_project 6 145279052 145286250 - MGP_C57BL6NJ_P0081185 Arhgdib protein_coding protein_coding MGP_C57BL6NJ_T0077066.1 MGP_C57BL6NJ_G0030949.1 mouse_genomes_project 6 27200367 27376309 - MGP_C57BL6NJ_P0077066 Lrrc4 protein_coding protein_coding MGP_C57BL6NJ_T0077071.1 MGP_C57BL6NJ_G0030949.1 mouse_genomes_project 6 27374096 27377711 - MGP_C57BL6NJ_P0077071 Lrrc4 protein_coding protein_coding MGP_C57BL6NJ_T0079536.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101636756 101856376 - MGP_C57BL6NJ_P0079536 Frmd4b protein_coding protein_coding MGP_C57BL6NJ_T0079537.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101636925 101641152 - Frmd4b protein_coding retained_intron MGP_C57BL6NJ_T0079538.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101636975 101663167 - Frmd4b protein_coding processed_transcript MGP_C57BL6NJ_T0079539.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101636981 101823672 - MGP_C57BL6NJ_P0079539 Frmd4b protein_coding protein_coding MGP_C57BL6NJ_T0079540.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101657104 101663217 - Frmd4b protein_coding retained_intron MGP_C57BL6NJ_T0079541.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101658028 101674933 - Frmd4b protein_coding processed_transcript MGP_C57BL6NJ_T0079542.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101658576 101706584 - Frmd4b protein_coding retained_intron MGP_C57BL6NJ_T0079543.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101674450 101749990 - Frmd4b protein_coding processed_transcript MGP_C57BL6NJ_T0079544.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101675108 101856425 - Frmd4b protein_coding processed_transcript MGP_C57BL6NJ_T0079545.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101703339 101992043 - Frmd4b protein_coding retained_intron MGP_C57BL6NJ_T0079546.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101749042 101749958 - Frmd4b protein_coding retained_intron MGP_C57BL6NJ_T0079547.1 MGP_C57BL6NJ_G0031516.1 mouse_genomes_project 6 101749510 101790752 - MGP_C57BL6NJ_P0079547 Frmd4b protein_coding protein_coding MGP_C57BL6NJ_T0000453.1 MGP_C57BL6NJ_G0000372.1 mouse_genomes_project 6 71977406 71977973 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101814.1 MGP_C57BL6NJ_G0039860.1 mouse_genomes_project 6 98039865 98040001 + Gm22840 snoRNA snoRNA MGP_C57BL6NJ_T0080976.1 MGP_C57BL6NJ_G0031801.1 mouse_genomes_project 6 137384718 137622648 - MGP_C57BL6NJ_P0080976 Klra7 protein_coding protein_coding MGP_C57BL6NJ_T0080978.1 MGP_C57BL6NJ_G0031801.1 mouse_genomes_project 6 137384933 137622609 - MGP_C57BL6NJ_P0080978 Klra7 protein_coding protein_coding MGP_C57BL6NJ_T0080979.1 MGP_C57BL6NJ_G0031801.1 mouse_genomes_project 6 137384959 137624293 - MGP_C57BL6NJ_P0080979 Klra7 protein_coding protein_coding MGP_C57BL6NJ_T0015709.1 MGP_C57BL6NJ_G0013754.1 mouse_genomes_project 6 37047435 37048160 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011913.1 MGP_C57BL6NJ_G0009998.1 mouse_genomes_project 6 52644775 52644834 + Gm27280 misc_RNA misc_RNA MGP_C57BL6NJ_T0011938.1 MGP_C57BL6NJ_G0010023.1 mouse_genomes_project 6 150775261 150775510 - Gm23775 misc_RNA misc_RNA MGP_C57BL6NJ_T0002218.1 MGP_C57BL6NJ_G0002109.1 mouse_genomes_project 6 95176803 95177397 - TEC TEC MGP_C57BL6NJ_T0077996.1 MGP_C57BL6NJ_G0031169.1 mouse_genomes_project 6 51738149 51769270 + MGP_C57BL6NJ_P0077996 Nfe2l3 protein_coding protein_coding MGP_C57BL6NJ_T0077997.1 MGP_C57BL6NJ_G0031169.1 mouse_genomes_project 6 51738228 51742443 + Nfe2l3 protein_coding processed_transcript MGP_C57BL6NJ_T0077998.1 MGP_C57BL6NJ_G0031169.1 mouse_genomes_project 6 51738228 51767378 + MGP_C57BL6NJ_P0077998 Nfe2l3 protein_coding protein_coding MGP_C57BL6NJ_T0080389.1 MGP_C57BL6NJ_G0031665.1 mouse_genomes_project 6 128941072 128953187 + MGP_C57BL6NJ_P0080389 Aicda protein_coding protein_coding MGP_C57BL6NJ_T0080390.1 MGP_C57BL6NJ_G0031665.1 mouse_genomes_project 6 128949491 128952083 + MGP_C57BL6NJ_P0080390 Aicda protein_coding protein_coding MGP_C57BL6NJ_T0000211.1 MGP_C57BL6NJ_G0000156.1 mouse_genomes_project 6 69686448 69686935 - MGP_C57BL6NJ_P0000211 Igkv9-123 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0008858.1 MGP_C57BL6NJ_G0007159.1 mouse_genomes_project 6 95448083 95458391 - 4930471M09Rik lincRNA lincRNA MGP_C57BL6NJ_T0008859.1 MGP_C57BL6NJ_G0007159.1 mouse_genomes_project 6 95456459 95458449 - 4930471M09Rik lincRNA lincRNA MGP_C57BL6NJ_T0016091.1 MGP_C57BL6NJ_G0014136.1 mouse_genomes_project 6 152016502 152016705 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005260.1 MGP_C57BL6NJ_G0004482.1 mouse_genomes_project 6 136076511 136099647 - Gm15987 antisense antisense MGP_C57BL6NJ_T0000262.1 MGP_C57BL6NJ_G0000197.1 mouse_genomes_project 6 72013874 72014428 - MGP_C57BL6NJ_P0000262 Igkv5-39 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000263.1 MGP_C57BL6NJ_G0000197.1 mouse_genomes_project 6 72013874 72014161 - MGP_C57BL6NJ_P0000263 Igkv5-39 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002138.1 MGP_C57BL6NJ_G0002029.1 mouse_genomes_project 6 63171691 63173723 + TEC TEC MGP_C57BL6NJ_T0002088.1 MGP_C57BL6NJ_G0001979.1 mouse_genomes_project 6 32534167 32536295 - TEC TEC MGP_C57BL6NJ_T0002120.1 MGP_C57BL6NJ_G0002011.1 mouse_genomes_project 6 47675458 47677041 + TEC TEC MGP_C57BL6NJ_T0081588.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157957029 157976295 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081589.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157957029 158025308 - MGP_C57BL6NJ_P0081589 Ipo8 protein_coding protein_coding MGP_C57BL6NJ_T0081590.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157957039 157961955 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081591.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157962633 157965044 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081592.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157963242 157968962 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081593.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157970889 157986827 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081594.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157977248 158017425 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0081595.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157989938 158010739 - Ipo8 protein_coding processed_transcript MGP_C57BL6NJ_T0081596.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157989939 158025305 - MGP_C57BL6NJ_P0081596 Ipo8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081597.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 157989941 158025267 - MGP_C57BL6NJ_P0081597 Ipo8 protein_coding protein_coding MGP_C57BL6NJ_T0081598.1 MGP_C57BL6NJ_G0031948.1 mouse_genomes_project 6 158012269 158015176 - Ipo8 protein_coding retained_intron MGP_C57BL6NJ_T0077641.1 MGP_C57BL6NJ_G0031067.1 mouse_genomes_project 6 41132685 41147713 + MGP_C57BL6NJ_P0077641 Ephb6 protein_coding protein_coding MGP_C57BL6NJ_T0077642.1 MGP_C57BL6NJ_G0031067.1 mouse_genomes_project 6 41140501 41141815 + Ephb6 protein_coding processed_transcript MGP_C57BL6NJ_T0077643.1 MGP_C57BL6NJ_G0031067.1 mouse_genomes_project 6 41141895 41143961 + MGP_C57BL6NJ_P0077643 Ephb6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077644.1 MGP_C57BL6NJ_G0031067.1 mouse_genomes_project 6 41147146 41147711 + MGP_C57BL6NJ_P0077644 Ephb6 protein_coding protein_coding MGP_C57BL6NJ_T0008791.1 MGP_C57BL6NJ_G0007105.1 mouse_genomes_project 6 56327251 56337255 + Gm3279 lincRNA lincRNA MGP_C57BL6NJ_T0002130.1 MGP_C57BL6NJ_G0002021.1 mouse_genomes_project 6 55497811 55501118 + TEC TEC MGP_C57BL6NJ_T0078837.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86877706 86909700 - Stambp protein_coding retained_intron MGP_C57BL6NJ_T0078838.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86877712 86909706 - MGP_C57BL6NJ_P0078838 Stambp protein_coding protein_coding MGP_C57BL6NJ_T0078839.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86877719 86910035 - MGP_C57BL6NJ_P0078839 Stambp protein_coding protein_coding MGP_C57BL6NJ_T0078840.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86877849 86889430 - Stambp protein_coding retained_intron MGP_C57BL6NJ_T0078841.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86878257 86909690 - MGP_C57BL6NJ_P0078841 Stambp protein_coding protein_coding MGP_C57BL6NJ_T0078842.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86888854 86889258 - Stambp protein_coding retained_intron MGP_C57BL6NJ_T0078843.1 MGP_C57BL6NJ_G0031373.1 mouse_genomes_project 6 86908405 86909712 - Stambp protein_coding retained_intron MGP_C57BL6NJ_T0002124.1 MGP_C57BL6NJ_G0002015.1 mouse_genomes_project 6 52687123 52687851 + TEC TEC MGP_C57BL6NJ_T0002071.1 MGP_C57BL6NJ_G0001962.1 mouse_genomes_project 6 19732303 19736383 + TEC TEC MGP_C57BL6NJ_T0005139.1 MGP_C57BL6NJ_G0004402.1 mouse_genomes_project 6 74808354 74809784 - Gm45051 antisense antisense MGP_C57BL6NJ_T0079323.1 MGP_C57BL6NJ_G0031466.1 mouse_genomes_project 6 93986769 93987702 - MGP_C57BL6NJ_P0079323 Vmn1r49 protein_coding protein_coding MGP_C57BL6NJ_T0079324.1 MGP_C57BL6NJ_G0031466.1 mouse_genomes_project 6 93986769 93993144 - MGP_C57BL6NJ_P0079324 Vmn1r49 protein_coding protein_coding MGP_C57BL6NJ_T0002323.1 MGP_C57BL6NJ_G0002213.1 mouse_genomes_project 6 155841708 155842942 + TEC TEC MGP_C57BL6NJ_T0016102.1 MGP_C57BL6NJ_G0014147.1 mouse_genomes_project 6 158272520 158272843 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081007.1 MGP_C57BL6NJ_G0031815.1 mouse_genomes_project 6 139299281 139300245 - MGP_C57BL6NJ_P0081007 Tas2r105 protein_coding protein_coding MGP_C57BL6NJ_T0005064.1 MGP_C57BL6NJ_G0004345.1 mouse_genomes_project 6 5430028 5441939 - Gm16055 antisense antisense MGP_C57BL6NJ_T0080402.1 MGP_C57BL6NJ_G0031668.1 mouse_genomes_project 6 129030385 129034238 + MGP_C57BL6NJ_P0080402 Dppa3 protein_coding protein_coding MGP_C57BL6NJ_T0080403.1 MGP_C57BL6NJ_G0031668.1 mouse_genomes_project 6 129030692 129034238 + MGP_C57BL6NJ_P0080403 Dppa3 protein_coding protein_coding MGP_C57BL6NJ_T0103261.1 MGP_C57BL6NJ_G0041055.1 mouse_genomes_project 6 59391501 59392401 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008722.1 MGP_C57BL6NJ_G0007058.1 mouse_genomes_project 6 30098022 30113625 + Gm14532 lincRNA lincRNA MGP_C57BL6NJ_T0016074.1 MGP_C57BL6NJ_G0014119.1 mouse_genomes_project 6 143302915 143303822 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005089.1 MGP_C57BL6NJ_G0004363.1 mouse_genomes_project 6 33030593 33052900 + Gm13856 antisense antisense MGP_C57BL6NJ_T0103302.1 MGP_C57BL6NJ_G0041095.1 mouse_genomes_project 6 140597407 140598399 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008831.1 MGP_C57BL6NJ_G0007138.1 mouse_genomes_project 6 87857727 87868628 - Gm10445 lincRNA lincRNA MGP_C57BL6NJ_T0103269.1 MGP_C57BL6NJ_G0041063.1 mouse_genomes_project 6 88610562 88610681 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0076908.1 MGP_C57BL6NJ_G0030911.1 mouse_genomes_project 6 15810974 15869397 - MGP_C57BL6NJ_P0076908 Asz1 protein_coding protein_coding MGP_C57BL6NJ_T0076909.1 MGP_C57BL6NJ_G0030911.1 mouse_genomes_project 6 15810993 15869384 - Asz1 protein_coding retained_intron MGP_C57BL6NJ_T0076910.1 MGP_C57BL6NJ_G0030911.1 mouse_genomes_project 6 15830031 15831335 - Asz1 protein_coding retained_intron MGP_C57BL6NJ_T0076911.1 MGP_C57BL6NJ_G0030911.1 mouse_genomes_project 6 15832003 15869385 - MGP_C57BL6NJ_P0076911 Asz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076912.1 MGP_C57BL6NJ_G0030911.1 mouse_genomes_project 6 15833290 15869401 - Asz1 protein_coding processed_transcript MGP_C57BL6NJ_T0078072.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53144985 53204714 + MGP_C57BL6NJ_P0078072 Tax1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0078073.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53145006 53165438 + MGP_C57BL6NJ_P0078073 Tax1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0078074.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53145019 53163760 + Tax1bp1 protein_coding retained_intron MGP_C57BL6NJ_T0078075.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53145475 53165472 + MGP_C57BL6NJ_P0078075 Tax1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0078076.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53145606 53159516 + MGP_C57BL6NJ_P0078076 Tax1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0078077.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53176815 53178743 + Tax1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0078078.1 MGP_C57BL6NJ_G0031189.1 mouse_genomes_project 6 53195506 53200239 + Tax1bp1 protein_coding retained_intron MGP_C57BL6NJ_T0005135.1 MGP_C57BL6NJ_G0004399.1 mouse_genomes_project 6 73925919 73926842 - 1700040L08Rik antisense antisense MGP_C57BL6NJ_T0015763.1 MGP_C57BL6NJ_G0013808.1 mouse_genomes_project 6 52501320 52501589 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077334.1 MGP_C57BL6NJ_G0030992.1 mouse_genomes_project 6 33032044 33055776 - MGP_C57BL6NJ_P0077334 Slc35b4 protein_coding protein_coding MGP_C57BL6NJ_T0077335.1 MGP_C57BL6NJ_G0030992.1 mouse_genomes_project 6 33035387 33042147 - Slc35b4 protein_coding retained_intron MGP_C57BL6NJ_T0077336.1 MGP_C57BL6NJ_G0030992.1 mouse_genomes_project 6 33036749 33055635 - Slc35b4 protein_coding retained_intron MGP_C57BL6NJ_T0077337.1 MGP_C57BL6NJ_G0030992.1 mouse_genomes_project 6 33039182 33055747 - MGP_C57BL6NJ_P0077337 Slc35b4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076780.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9313857 9339455 + MGP_C57BL6NJ_P0076780 Phf14 protein_coding protein_coding MGP_C57BL6NJ_T0076781.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9313932 9359838 + MGP_C57BL6NJ_P0076781 Phf14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076782.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9331875 9442048 + MGP_C57BL6NJ_P0076782 Phf14 protein_coding protein_coding MGP_C57BL6NJ_T0076783.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9331925 9409775 + MGP_C57BL6NJ_P0076783 Phf14 protein_coding protein_coding MGP_C57BL6NJ_T0076784.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9331960 9485201 + MGP_C57BL6NJ_P0076784 Phf14 protein_coding protein_coding MGP_C57BL6NJ_T0076785.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9332827 9388220 + MGP_C57BL6NJ_P0076785 Phf14 protein_coding protein_coding MGP_C57BL6NJ_T0076786.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9388825 9390417 + Phf14 protein_coding retained_intron MGP_C57BL6NJ_T0076787.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9392633 9397071 + Phf14 protein_coding retained_intron MGP_C57BL6NJ_T0076788.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9408581 9485096 + MGP_C57BL6NJ_P0076788 Phf14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076789.1 MGP_C57BL6NJ_G0030892.1 mouse_genomes_project 6 9444338 9450276 + Phf14 protein_coding retained_intron MGP_C57BL6NJ_T0081177.1 MGP_C57BL6NJ_G0031875.1 mouse_genomes_project 6 145247699 145266825 - MGP_C57BL6NJ_P0081177 Erp27 protein_coding protein_coding MGP_C57BL6NJ_T0081178.1 MGP_C57BL6NJ_G0031875.1 mouse_genomes_project 6 145250133 145266825 - Erp27 protein_coding retained_intron MGP_C57BL6NJ_T0081179.1 MGP_C57BL6NJ_G0031875.1 mouse_genomes_project 6 145264311 145266785 - Erp27 protein_coding retained_intron MGP_C57BL6NJ_T0078100.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54564059 54594830 + Chn2 protein_coding processed_transcript MGP_C57BL6NJ_T0078101.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54564078 54841991 + MGP_C57BL6NJ_P0078101 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078102.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54564118 54756425 + MGP_C57BL6NJ_P0078102 Chn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078103.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54564544 54758407 + Chn2 protein_coding processed_transcript MGP_C57BL6NJ_T0078104.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54564591 54730620 + MGP_C57BL6NJ_P0078104 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078105.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54624729 54756392 + Chn2 protein_coding processed_transcript MGP_C57BL6NJ_T0078106.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54800691 54841563 + MGP_C57BL6NJ_P0078106 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078107.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54802964 54841355 + MGP_C57BL6NJ_P0078107 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078108.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54804975 54841661 + MGP_C57BL6NJ_P0078108 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078109.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808309 54843080 + MGP_C57BL6NJ_P0078109 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078110.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808727 54841514 + MGP_C57BL6NJ_P0078110 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078111.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808727 54841514 + MGP_C57BL6NJ_P0078111 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078112.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808727 54841514 + MGP_C57BL6NJ_P0078112 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078113.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808727 54841514 + MGP_C57BL6NJ_P0078113 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0078114.1 MGP_C57BL6NJ_G0031194.1 mouse_genomes_project 6 54808727 54841514 + MGP_C57BL6NJ_P0078114 Chn2 protein_coding protein_coding MGP_C57BL6NJ_T0077889.1 MGP_C57BL6NJ_G0031143.1 mouse_genomes_project 6 48778623 48785540 - MGP_C57BL6NJ_P0077889 Gimap6 protein_coding protein_coding MGP_C57BL6NJ_T0077890.1 MGP_C57BL6NJ_G0031143.1 mouse_genomes_project 6 48778624 48785528 - MGP_C57BL6NJ_P0077890 Gimap6 protein_coding protein_coding MGP_C57BL6NJ_T0077891.1 MGP_C57BL6NJ_G0031143.1 mouse_genomes_project 6 48780775 48785511 - MGP_C57BL6NJ_P0077891 Gimap6 protein_coding protein_coding MGP_C57BL6NJ_T0077892.1 MGP_C57BL6NJ_G0031143.1 mouse_genomes_project 6 48781463 48783278 - Gimap6 protein_coding processed_transcript MGP_C57BL6NJ_T0079175.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91646962 91673732 + MGP_C57BL6NJ_P0079175 Copg1 protein_coding protein_coding MGP_C57BL6NJ_T0079176.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91647076 91649908 + MGP_C57BL6NJ_P0079176 Copg1 protein_coding protein_coding MGP_C57BL6NJ_T0079177.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91647088 91652956 + Copg1 protein_coding processed_transcript MGP_C57BL6NJ_T0079178.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91647105 91654111 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079179.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91653091 91661472 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079180.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91654264 91655251 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079181.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91654604 91663985 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079182.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91655145 91672667 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079183.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91656951 91661884 + Copg1 protein_coding retained_intron MGP_C57BL6NJ_T0079184.1 MGP_C57BL6NJ_G0031438.1 mouse_genomes_project 6 91668908 91670191 + Copg1 protein_coding processed_transcript MGP_C57BL6NJ_T0080748.1 MGP_C57BL6NJ_G0031739.1 mouse_genomes_project 6 133555725 133590932 - MGP_C57BL6NJ_P0080748 Kcna6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080749.1 MGP_C57BL6NJ_G0031739.1 mouse_genomes_project 6 133555727 133587081 - Kcna6 protein_coding processed_transcript MGP_C57BL6NJ_T0080750.1 MGP_C57BL6NJ_G0031739.1 mouse_genomes_project 6 133555728 133590944 - MGP_C57BL6NJ_P0080750 Kcna6 protein_coding protein_coding MGP_C57BL6NJ_T0080751.1 MGP_C57BL6NJ_G0031739.1 mouse_genomes_project 6 133586957 133590421 - MGP_C57BL6NJ_P0080751 Kcna6 protein_coding protein_coding MGP_C57BL6NJ_T0016090.1 MGP_C57BL6NJ_G0014135.1 mouse_genomes_project 6 152006023 152006492 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002066.1 MGP_C57BL6NJ_G0001957.1 mouse_genomes_project 6 15477496 15478875 - TEC TEC MGP_C57BL6NJ_T0077250.1 MGP_C57BL6NJ_G0030977.1 mouse_genomes_project 6 29270741 29295666 + MGP_C57BL6NJ_P0077250 Cpa4 protein_coding protein_coding MGP_C57BL6NJ_T0015890.1 MGP_C57BL6NJ_G0013935.1 mouse_genomes_project 6 89499098 89499734 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005293.1 MGP_C57BL6NJ_G0004511.1 mouse_genomes_project 6 157143307 157183027 - Far2os2 antisense antisense MGP_C57BL6NJ_T0015932.1 MGP_C57BL6NJ_G0013977.1 mouse_genomes_project 6 108802201 108802581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015680.1 MGP_C57BL6NJ_G0013725.1 mouse_genomes_project 6 20949927 20950630 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079081.1 MGP_C57BL6NJ_G0031418.1 mouse_genomes_project 6 90379381 90422197 - MGP_C57BL6NJ_P0079081 Gmcl1 protein_coding protein_coding MGP_C57BL6NJ_T0079082.1 MGP_C57BL6NJ_G0031418.1 mouse_genomes_project 6 90401808 90404558 - Gmcl1 protein_coding retained_intron MGP_C57BL6NJ_T0079083.1 MGP_C57BL6NJ_G0031418.1 mouse_genomes_project 6 90401892 90407216 - Gmcl1 protein_coding retained_intron MGP_C57BL6NJ_T0079084.1 MGP_C57BL6NJ_G0031418.1 mouse_genomes_project 6 90408819 90422054 - MGP_C57BL6NJ_P0079084 Gmcl1 protein_coding protein_coding MGP_C57BL6NJ_T0016076.1 MGP_C57BL6NJ_G0014121.1 mouse_genomes_project 6 144643960 144645151 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101841.1 MGP_C57BL6NJ_G0039887.1 mouse_genomes_project 6 152373190 152373319 - Gm23272 snoRNA snoRNA MGP_C57BL6NJ_T0000204.1 MGP_C57BL6NJ_G0000152.1 mouse_genomes_project 6 69529115 69529589 + MGP_C57BL6NJ_P0000204 Igkv9-129 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000205.1 MGP_C57BL6NJ_G0000152.1 mouse_genomes_project 6 69529115 69529589 + MGP_C57BL6NJ_P0000205 Igkv9-129 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077638.1 MGP_C57BL6NJ_G0031064.1 mouse_genomes_project 6 40921572 40923097 - MGP_C57BL6NJ_P0077638 protein_coding protein_coding MGP_C57BL6NJ_T0008935.1 MGP_C57BL6NJ_G0007219.1 mouse_genomes_project 6 143854503 143884084 + 4930425L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0008936.1 MGP_C57BL6NJ_G0007219.1 mouse_genomes_project 6 143874819 143885220 + 4930425L21Rik lincRNA lincRNA MGP_C57BL6NJ_T0002052.1 MGP_C57BL6NJ_G0001943.1 mouse_genomes_project 6 1806285 1810434 + TEC TEC MGP_C57BL6NJ_T0008900.1 MGP_C57BL6NJ_G0007193.1 mouse_genomes_project 6 124155747 124163970 - Gm30498 lincRNA lincRNA MGP_C57BL6NJ_T0080078.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122393168 122433600 - MGP_C57BL6NJ_P0080078 Rassf4 protein_coding protein_coding MGP_C57BL6NJ_T0080079.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122399384 122433457 - MGP_C57BL6NJ_P0080079 Rassf4 protein_coding protein_coding MGP_C57BL6NJ_T0080080.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122399648 122401163 - Rassf4 protein_coding processed_transcript MGP_C57BL6NJ_T0080081.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122403085 122433437 - Rassf4 protein_coding retained_intron MGP_C57BL6NJ_T0080082.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122405398 122408097 - Rassf4 protein_coding retained_intron MGP_C57BL6NJ_T0080083.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122406063 122433419 - MGP_C57BL6NJ_P0080083 Rassf4 protein_coding protein_coding MGP_C57BL6NJ_T0080084.1 MGP_C57BL6NJ_G0031612.1 mouse_genomes_project 6 122406134 122433446 - MGP_C57BL6NJ_P0080084 Rassf4 protein_coding protein_coding MGP_C57BL6NJ_T0015782.1 MGP_C57BL6NJ_G0013827.1 mouse_genomes_project 6 61557699 61557881 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080505.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131407724 131426377 - MGP_C57BL6NJ_P0080505 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080506.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131407724 131432323 - MGP_C57BL6NJ_P0080506 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080507.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131407724 131432234 - MGP_C57BL6NJ_P0080507 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080508.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131407737 131408860 - MGP_C57BL6NJ_P0080508 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080509.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131408125 131432193 - MGP_C57BL6NJ_P0080509 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080510.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131418145 131420684 - MGP_C57BL6NJ_P0080510 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080511.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131418193 131420634 - MGP_C57BL6NJ_P0080511 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080512.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131420969 131421931 - Ptpn6 protein_coding retained_intron MGP_C57BL6NJ_T0080513.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131422123 131425994 - Ptpn6 protein_coding processed_transcript MGP_C57BL6NJ_T0080514.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131425584 131426305 - MGP_C57BL6NJ_P0080514 Ptpn6 protein_coding protein_coding MGP_C57BL6NJ_T0080515.1 MGP_C57BL6NJ_G0031696.1 mouse_genomes_project 6 131425877 131426333 - Ptpn6 protein_coding retained_intron MGP_C57BL6NJ_T0002094.1 MGP_C57BL6NJ_G0001985.1 mouse_genomes_project 6 39628357 39631184 + TEC TEC MGP_C57BL6NJ_T0002062.1 MGP_C57BL6NJ_G0001953.1 mouse_genomes_project 6 13238308 13240548 + TEC TEC MGP_C57BL6NJ_T0015850.1 MGP_C57BL6NJ_G0013895.1 mouse_genomes_project 6 74085687 74086275 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079872.1 MGP_C57BL6NJ_G0031574.1 mouse_genomes_project 6 119240195 119254718 + MGP_C57BL6NJ_P0079872 Tatdn2 protein_coding protein_coding MGP_C57BL6NJ_T0079873.1 MGP_C57BL6NJ_G0031574.1 mouse_genomes_project 6 119240709 119254598 + MGP_C57BL6NJ_P0079873 Tatdn2 protein_coding protein_coding MGP_C57BL6NJ_T0079874.1 MGP_C57BL6NJ_G0031574.1 mouse_genomes_project 6 119240818 119253854 + MGP_C57BL6NJ_P0079874 Tatdn2 protein_coding protein_coding MGP_C57BL6NJ_T0079875.1 MGP_C57BL6NJ_G0031574.1 mouse_genomes_project 6 119248475 119254715 + MGP_C57BL6NJ_P0079875 Tatdn2 protein_coding protein_coding MGP_C57BL6NJ_T0079876.1 MGP_C57BL6NJ_G0031574.1 mouse_genomes_project 6 119250924 119254098 + MGP_C57BL6NJ_P0079876 Tatdn2 protein_coding protein_coding MGP_C57BL6NJ_T0000438.1 MGP_C57BL6NJ_G0000357.1 mouse_genomes_project 6 71358060 71358593 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0100512.1 MGP_C57BL6NJ_G0038558.1 mouse_genomes_project 6 28066527 28066633 - Gm26484 snRNA snRNA MGP_C57BL6NJ_T0100555.1 MGP_C57BL6NJ_G0038601.1 mouse_genomes_project 6 136307669 136307732 + Gm26160 snRNA snRNA MGP_C57BL6NJ_T0002068.1 MGP_C57BL6NJ_G0001959.1 mouse_genomes_project 6 15870481 15872301 - TEC TEC MGP_C57BL6NJ_T0081337.1 MGP_C57BL6NJ_G0031905.1 mouse_genomes_project 6 151177318 151194918 + MGP_C57BL6NJ_P0081337 Pyroxd1 protein_coding protein_coding MGP_C57BL6NJ_T0081338.1 MGP_C57BL6NJ_G0031905.1 mouse_genomes_project 6 151177331 151179539 + Pyroxd1 protein_coding retained_intron MGP_C57BL6NJ_T0081339.1 MGP_C57BL6NJ_G0031905.1 mouse_genomes_project 6 151177342 151193712 + Pyroxd1 protein_coding retained_intron MGP_C57BL6NJ_T0081340.1 MGP_C57BL6NJ_G0031905.1 mouse_genomes_project 6 151178600 151189181 + Pyroxd1 protein_coding processed_transcript MGP_C57BL6NJ_T0081342.1 MGP_C57BL6NJ_G0031905.1 mouse_genomes_project 6 151184604 151186356 + Pyroxd1 protein_coding retained_intron MGP_C57BL6NJ_T0005291.1 MGP_C57BL6NJ_G0004510.1 mouse_genomes_project 6 156550086 156598597 - Gm6288 antisense antisense MGP_C57BL6NJ_T0005292.1 MGP_C57BL6NJ_G0004510.1 mouse_genomes_project 6 156597912 156598828 - Gm6288 antisense antisense MGP_C57BL6NJ_T0002287.1 MGP_C57BL6NJ_G0002177.1 mouse_genomes_project 6 135167293 135171033 - TEC TEC MGP_C57BL6NJ_T0002827.1 MGP_C57BL6NJ_G0002690.1 mouse_genomes_project 6 40661624 40662117 + MGP_C57BL6NJ_P0002827 Trbv21 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002828.1 MGP_C57BL6NJ_G0002690.1 mouse_genomes_project 6 40661829 40662119 + MGP_C57BL6NJ_P0002828 Trbv21 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0016094.1 MGP_C57BL6NJ_G0014139.1 mouse_genomes_project 6 155725784 155726171 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078260.1 MGP_C57BL6NJ_G0031243.1 mouse_genomes_project 6 58681881 58682916 - MGP_C57BL6NJ_P0078260 Vmn1r21 protein_coding protein_coding MGP_C57BL6NJ_T0078261.1 MGP_C57BL6NJ_G0031243.1 mouse_genomes_project 6 58682552 58688770 - MGP_C57BL6NJ_P0078261 Vmn1r21 protein_coding protein_coding MGP_C57BL6NJ_T0078262.1 MGP_C57BL6NJ_G0031243.1 mouse_genomes_project 6 58682559 58688772 - MGP_C57BL6NJ_P0078262 Vmn1r21 protein_coding protein_coding MGP_C57BL6NJ_T0005136.1 MGP_C57BL6NJ_G0004400.1 mouse_genomes_project 6 74373594 74376225 - Gm26628 antisense antisense MGP_C57BL6NJ_T0002309.1 MGP_C57BL6NJ_G0002199.1 mouse_genomes_project 6 148168095 148169377 - TEC TEC MGP_C57BL6NJ_T0077675.1 MGP_C57BL6NJ_G0031081.1 mouse_genomes_project 6 41794339 41796925 + MGP_C57BL6NJ_P0077675 Tmem139 protein_coding protein_coding MGP_C57BL6NJ_T0080133.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124296347 124324530 - MGP_C57BL6NJ_P0080133 Zfp248 protein_coding protein_coding MGP_C57BL6NJ_T0080134.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124300692 124324440 - Zfp248 protein_coding processed_transcript MGP_C57BL6NJ_T0080135.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124300770 124324086 - MGP_C57BL6NJ_P0080135 Zfp248 protein_coding protein_coding MGP_C57BL6NJ_T0080136.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124322119 124324523 - Zfp248 protein_coding retained_intron MGP_C57BL6NJ_T0080137.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124322152 124324492 - Zfp248 protein_coding retained_intron MGP_C57BL6NJ_T0080138.1 MGP_C57BL6NJ_G0031624.1 mouse_genomes_project 6 124322188 124323777 - Zfp248 protein_coding processed_transcript MGP_C57BL6NJ_T0005133.1 MGP_C57BL6NJ_G0004397.1 mouse_genomes_project 6 68561212 68562450 - antisense antisense MGP_C57BL6NJ_T0080897.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136059750 136114097 + MGP_C57BL6NJ_P0080897 Clec2g protein_coding protein_coding MGP_C57BL6NJ_T0080898.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136059774 136074293 + Clec2g protein_coding retained_intron MGP_C57BL6NJ_T0080899.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136092444 136112775 + MGP_C57BL6NJ_P0080899 Clec2g protein_coding protein_coding MGP_C57BL6NJ_T0080900.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136092444 136114100 + MGP_C57BL6NJ_P0080900 Clec2g protein_coding protein_coding MGP_C57BL6NJ_T0080901.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136092545 136112639 + MGP_C57BL6NJ_P0080901 Clec2g protein_coding protein_coding MGP_C57BL6NJ_T0080902.1 MGP_C57BL6NJ_G0031775.1 mouse_genomes_project 6 136107516 136112585 + MGP_C57BL6NJ_P0080902 Clec2g protein_coding protein_coding MGP_C57BL6NJ_T0015891.1 MGP_C57BL6NJ_G0013936.1 mouse_genomes_project 6 89533839 89534683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079884.1 MGP_C57BL6NJ_G0031576.1 mouse_genomes_project 6 119271688 119285489 - MGP_C57BL6NJ_P0079884 Sec13 protein_coding protein_coding MGP_C57BL6NJ_T0079885.1 MGP_C57BL6NJ_G0031576.1 mouse_genomes_project 6 119274056 119279816 - Sec13 protein_coding retained_intron MGP_C57BL6NJ_T0079886.1 MGP_C57BL6NJ_G0031576.1 mouse_genomes_project 6 119274222 119279816 - Sec13 protein_coding retained_intron MGP_C57BL6NJ_T0079887.1 MGP_C57BL6NJ_G0031576.1 mouse_genomes_project 6 119283874 119285473 - Sec13 protein_coding retained_intron MGP_C57BL6NJ_T0002153.1 MGP_C57BL6NJ_G0002044.1 mouse_genomes_project 6 75136828 75138109 + TEC TEC MGP_C57BL6NJ_T0078979.1 MGP_C57BL6NJ_G0031401.1 mouse_genomes_project 6 89510614 89515268 - MGP_C57BL6NJ_P0078979 Nat8f4 protein_coding protein_coding MGP_C57BL6NJ_T0078980.1 MGP_C57BL6NJ_G0031401.1 mouse_genomes_project 6 89510614 89518308 - MGP_C57BL6NJ_P0078980 Nat8f4 protein_coding protein_coding MGP_C57BL6NJ_T0081156.1 MGP_C57BL6NJ_G0031868.1 mouse_genomes_project 6 145138165 145142417 - MGP_C57BL6NJ_P0081156 Hist4h4 protein_coding protein_coding MGP_C57BL6NJ_T0002108.1 MGP_C57BL6NJ_G0001999.1 mouse_genomes_project 6 45234835 45238146 + TEC TEC MGP_C57BL6NJ_T0002310.1 MGP_C57BL6NJ_G0002200.1 mouse_genomes_project 6 148368859 148370767 + TEC TEC MGP_C57BL6NJ_T0008730.1 MGP_C57BL6NJ_G0007063.1 mouse_genomes_project 6 30429116 30440101 + lincRNA lincRNA MGP_C57BL6NJ_T0078653.1 MGP_C57BL6NJ_G0031337.1 mouse_genomes_project 6 81409850 81412153 - Reg3g protein_coding retained_intron MGP_C57BL6NJ_T0078654.1 MGP_C57BL6NJ_G0031337.1 mouse_genomes_project 6 81409850 81412454 - MGP_C57BL6NJ_P0078654 Reg3g protein_coding protein_coding MGP_C57BL6NJ_T0016037.1 MGP_C57BL6NJ_G0014082.1 mouse_genomes_project 6 137821793 137822132 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100517.1 MGP_C57BL6NJ_G0038563.1 mouse_genomes_project 6 37312463 37312567 + Gm23231 snRNA snRNA MGP_C57BL6NJ_T0080456.1 MGP_C57BL6NJ_G0031687.1 mouse_genomes_project 6 130865475 130893669 + MGP_C57BL6NJ_P0080456 Cd163 protein_coding protein_coding MGP_C57BL6NJ_T0080457.1 MGP_C57BL6NJ_G0031687.1 mouse_genomes_project 6 130865519 130893669 + MGP_C57BL6NJ_P0080457 Cd163 protein_coding protein_coding MGP_C57BL6NJ_T0080458.1 MGP_C57BL6NJ_G0031687.1 mouse_genomes_project 6 130867825 130892931 + MGP_C57BL6NJ_P0080458 Cd163 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080459.1 MGP_C57BL6NJ_G0031687.1 mouse_genomes_project 6 130883628 130893661 + Cd163 protein_coding retained_intron MGP_C57BL6NJ_T0015627.1 MGP_C57BL6NJ_G0013672.1 mouse_genomes_project 6 1369873 1372862 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015786.1 MGP_C57BL6NJ_G0013831.1 mouse_genomes_project 6 63515482 63515791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000053.1 MGP_C57BL6NJ_G0000044.1 mouse_genomes_project 6 73023586 73023629 + Igkj2 IG_J_gene processed_transcript MGP_C57BL6NJ_T0000054.1 MGP_C57BL6NJ_G0000044.1 mouse_genomes_project 6 73023586 73023625 + MGP_C57BL6NJ_P0000054 Igkj2 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0079337.1 MGP_C57BL6NJ_G0031475.1 mouse_genomes_project 6 94319277 94336983 + MGP_C57BL6NJ_P0079337 Zxdc protein_coding protein_coding MGP_C57BL6NJ_T0079338.1 MGP_C57BL6NJ_G0031475.1 mouse_genomes_project 6 94319279 94359415 + MGP_C57BL6NJ_P0079338 Zxdc protein_coding protein_coding MGP_C57BL6NJ_T0079339.1 MGP_C57BL6NJ_G0031475.1 mouse_genomes_project 6 94319393 94336114 + MGP_C57BL6NJ_P0079339 Zxdc protein_coding protein_coding MGP_C57BL6NJ_T0079340.1 MGP_C57BL6NJ_G0031475.1 mouse_genomes_project 6 94319398 94335002 + MGP_C57BL6NJ_P0079340 Zxdc protein_coding protein_coding MGP_C57BL6NJ_T0079341.1 MGP_C57BL6NJ_G0031475.1 mouse_genomes_project 6 94319403 94324337 + Zxdc protein_coding retained_intron MGP_C57BL6NJ_T0002229.1 MGP_C57BL6NJ_G0002120.1 mouse_genomes_project 6 97306786 97310331 + TEC TEC MGP_C57BL6NJ_T0081438.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154208602 154240961 - Casc1 protein_coding retained_intron MGP_C57BL6NJ_T0081439.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154208602 154246584 - MGP_C57BL6NJ_P0081439 Casc1 protein_coding protein_coding MGP_C57BL6NJ_T0081440.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154208602 154246405 - MGP_C57BL6NJ_P0081440 Casc1 protein_coding protein_coding MGP_C57BL6NJ_T0081441.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154208710 154246488 - MGP_C57BL6NJ_P0081441 Casc1 protein_coding protein_coding MGP_C57BL6NJ_T0081442.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154225881 154246513 - Casc1 protein_coding retained_intron MGP_C57BL6NJ_T0081443.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154228505 154246483 - Casc1 protein_coding processed_transcript MGP_C57BL6NJ_T0081444.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154238507 154246493 - Casc1 protein_coding retained_intron MGP_C57BL6NJ_T0081445.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154239887 154246523 - Casc1 protein_coding retained_intron MGP_C57BL6NJ_T0081446.1 MGP_C57BL6NJ_G0031921.1 mouse_genomes_project 6 154243596 154246619 - Casc1 protein_coding retained_intron MGP_C57BL6NJ_T0078870.1 MGP_C57BL6NJ_G0031381.1 mouse_genomes_project 6 87186947 87213428 - MGP_C57BL6NJ_P0078870 Paip2b protein_coding protein_coding MGP_C57BL6NJ_T0078871.1 MGP_C57BL6NJ_G0031381.1 mouse_genomes_project 6 87190314 87191857 - Paip2b protein_coding retained_intron MGP_C57BL6NJ_T0078872.1 MGP_C57BL6NJ_G0031381.1 mouse_genomes_project 6 87191370 87213400 - Paip2b protein_coding retained_intron MGP_C57BL6NJ_T0078873.1 MGP_C57BL6NJ_G0031381.1 mouse_genomes_project 6 87194515 87213400 - Paip2b protein_coding retained_intron MGP_C57BL6NJ_T0078874.1 MGP_C57BL6NJ_G0031381.1 mouse_genomes_project 6 87213143 87213387 - Paip2b protein_coding retained_intron MGP_C57BL6NJ_T0015917.1 MGP_C57BL6NJ_G0013962.1 mouse_genomes_project 6 103211515 103211795 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076741.1 MGP_C57BL6NJ_G0030882.1 mouse_genomes_project 6 4883309 4918090 + MGP_C57BL6NJ_P0076741 C1galt1 protein_coding protein_coding MGP_C57BL6NJ_T0008887.1 MGP_C57BL6NJ_G0007182.1 mouse_genomes_project 6 119268849 119269778 + Gm44053 lincRNA lincRNA MGP_C57BL6NJ_T0080867.1 MGP_C57BL6NJ_G0031767.1 mouse_genomes_project 6 135670980 135688423 - MGP_C57BL6NJ_P0080867 Klrb1a protein_coding protein_coding MGP_C57BL6NJ_T0080868.1 MGP_C57BL6NJ_G0031767.1 mouse_genomes_project 6 135671104 135688361 - MGP_C57BL6NJ_P0080868 Klrb1a protein_coding protein_coding MGP_C57BL6NJ_T0080869.1 MGP_C57BL6NJ_G0031767.1 mouse_genomes_project 6 135671469 135688305 - MGP_C57BL6NJ_P0080869 Klrb1a protein_coding protein_coding MGP_C57BL6NJ_T0080870.1 MGP_C57BL6NJ_G0031767.1 mouse_genomes_project 6 135671469 135688402 - MGP_C57BL6NJ_P0080870 Klrb1a protein_coding protein_coding MGP_C57BL6NJ_T0080871.1 MGP_C57BL6NJ_G0031767.1 mouse_genomes_project 6 135684615 135689022 - MGP_C57BL6NJ_P0080871 Klrb1a protein_coding protein_coding MGP_C57BL6NJ_T0002260.1 MGP_C57BL6NJ_G0002151.1 mouse_genomes_project 6 119216353 119218841 - TEC TEC MGP_C57BL6NJ_T0000254.1 MGP_C57BL6NJ_G0000189.1 mouse_genomes_project 6 71788029 71788578 - MGP_C57BL6NJ_P0000254 Igkv4-57-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0079472.1 MGP_C57BL6NJ_G0031500.1 mouse_genomes_project 6 96906647 96935328 + MGP_C57BL6NJ_P0079472 A730049H05Rik protein_coding protein_coding MGP_C57BL6NJ_T0079473.1 MGP_C57BL6NJ_G0031500.1 mouse_genomes_project 6 96919620 96938996 + A730049H05Rik protein_coding processed_transcript MGP_C57BL6NJ_T0002213.1 MGP_C57BL6NJ_G0002104.1 mouse_genomes_project 6 92753531 92756461 + TEC TEC MGP_C57BL6NJ_T0000202.1 MGP_C57BL6NJ_G0000151.1 mouse_genomes_project 6 69453500 69453966 + MGP_C57BL6NJ_P0000202 Igkv14-130 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000203.1 MGP_C57BL6NJ_G0000151.1 mouse_genomes_project 6 69453500 69453966 + MGP_C57BL6NJ_P0000203 Igkv14-130 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0076676.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764262 2048188 + MGP_C57BL6NJ_P0076676 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076677.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764319 1956819 + MGP_C57BL6NJ_P0076677 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076678.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764363 2048819 + MGP_C57BL6NJ_P0076678 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076679.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764608 2054255 + MGP_C57BL6NJ_P0076679 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076680.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764661 1877294 + MGP_C57BL6NJ_P0076680 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076681.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1764720 2053114 + Ppp1r9a protein_coding retained_intron MGP_C57BL6NJ_T0076682.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1765076 1768076 + MGP_C57BL6NJ_P0076682 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076683.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1766704 2048407 + MGP_C57BL6NJ_P0076683 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076684.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1766704 2048415 + MGP_C57BL6NJ_P0076684 Ppp1r9a protein_coding protein_coding MGP_C57BL6NJ_T0076685.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1767695 2042847 + MGP_C57BL6NJ_P0076685 Ppp1r9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076686.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1993761 1996890 + Ppp1r9a protein_coding processed_transcript MGP_C57BL6NJ_T0076687.1 MGP_C57BL6NJ_G0030868.1 mouse_genomes_project 6 1996561 1999611 + Ppp1r9a protein_coding retained_intron MGP_C57BL6NJ_T0016106.1 MGP_C57BL6NJ_G0014151.1 mouse_genomes_project 6 158657183 158657633 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015744.1 MGP_C57BL6NJ_G0013789.1 mouse_genomes_project 6 49046818 49047148 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080423.1 MGP_C57BL6NJ_G0031674.1 mouse_genomes_project 6 129371477 129385872 + MGP_C57BL6NJ_P0080423 Clec4a1 protein_coding protein_coding MGP_C57BL6NJ_T0078226.1 MGP_C57BL6NJ_G0031222.1 mouse_genomes_project 6 57748628 57749692 + MGP_C57BL6NJ_P0078226 Vmn1r6 protein_coding protein_coding MGP_C57BL6NJ_T0008767.1 MGP_C57BL6NJ_G0007088.1 mouse_genomes_project 6 51026839 51066434 + C530044C16Rik lincRNA lincRNA MGP_C57BL6NJ_T0008768.1 MGP_C57BL6NJ_G0007088.1 mouse_genomes_project 6 51027048 51066573 + C530044C16Rik lincRNA lincRNA MGP_C57BL6NJ_T0002826.1 MGP_C57BL6NJ_G0002689.1 mouse_genomes_project 6 40652118 40652823 + MGP_C57BL6NJ_P0002826 Trbv20 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0079325.1 MGP_C57BL6NJ_G0031467.1 mouse_genomes_project 6 94010424 94017076 + MGP_C57BL6NJ_P0079325 Vmn1r50 protein_coding protein_coding MGP_C57BL6NJ_T0079326.1 MGP_C57BL6NJ_G0031467.1 mouse_genomes_project 6 94016143 94017076 + MGP_C57BL6NJ_P0079326 Vmn1r50 protein_coding protein_coding MGP_C57BL6NJ_T0011065.1 MGP_C57BL6NJ_G0009150.1 mouse_genomes_project 6 131911900 131911987 + Mir3098 miRNA miRNA MGP_C57BL6NJ_T0080980.1 MGP_C57BL6NJ_G0031803.1 mouse_genomes_project 6 137429647 137695511 - MGP_C57BL6NJ_P0080980 protein_coding protein_coding MGP_C57BL6NJ_T0079782.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118846852 118859242 - MGP_C57BL6NJ_P0079782 Camk1 protein_coding protein_coding MGP_C57BL6NJ_T0079783.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118846856 118849350 - Camk1 protein_coding retained_intron MGP_C57BL6NJ_T0079784.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118846865 118859162 - Camk1 protein_coding retained_intron MGP_C57BL6NJ_T0079785.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118849529 118853410 - Camk1 protein_coding retained_intron MGP_C57BL6NJ_T0079786.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118850615 118859236 - MGP_C57BL6NJ_P0079786 Camk1 protein_coding protein_coding MGP_C57BL6NJ_T0079787.1 MGP_C57BL6NJ_G0031557.1 mouse_genomes_project 6 118853395 118859221 - Camk1 protein_coding retained_intron MGP_C57BL6NJ_T0002063.1 MGP_C57BL6NJ_G0001954.1 mouse_genomes_project 6 13418810 13420546 + TEC TEC MGP_C57BL6NJ_T0011060.1 MGP_C57BL6NJ_G0009145.1 mouse_genomes_project 6 127442641 127442738 - Gm24855 miRNA miRNA MGP_C57BL6NJ_T0008953.1 MGP_C57BL6NJ_G0007231.1 mouse_genomes_project 6 154292564 154293885 + Gm15706 lincRNA lincRNA MGP_C57BL6NJ_T0078267.1 MGP_C57BL6NJ_G0031248.1 mouse_genomes_project 6 58823607 58824660 - MGP_C57BL6NJ_P0078267 Vmn1r25 protein_coding protein_coding MGP_C57BL6NJ_T0079077.1 MGP_C57BL6NJ_G0031417.1 mouse_genomes_project 6 90362790 90372162 - MGP_C57BL6NJ_P0079077 Snrnp27 protein_coding protein_coding MGP_C57BL6NJ_T0079078.1 MGP_C57BL6NJ_G0031417.1 mouse_genomes_project 6 90363044 90372131 - Snrnp27 protein_coding processed_transcript MGP_C57BL6NJ_T0079079.1 MGP_C57BL6NJ_G0031417.1 mouse_genomes_project 6 90363311 90372162 - MGP_C57BL6NJ_P0079079 Snrnp27 protein_coding protein_coding MGP_C57BL6NJ_T0079080.1 MGP_C57BL6NJ_G0031417.1 mouse_genomes_project 6 90370315 90372157 - Snrnp27 protein_coding processed_transcript MGP_C57BL6NJ_T0015834.1 MGP_C57BL6NJ_G0013879.1 mouse_genomes_project 6 69913180 69913857 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002304.1 MGP_C57BL6NJ_G0002194.1 mouse_genomes_project 6 145189351 145189857 - TEC TEC MGP_C57BL6NJ_T0099497.1 MGP_C57BL6NJ_G0037550.1 mouse_genomes_project 6 90694566 90695215 + Gm44091 sense_intronic sense_intronic MGP_C57BL6NJ_T0005156.1 MGP_C57BL6NJ_G0004412.1 mouse_genomes_project 6 87061844 87083301 - Vax2os antisense antisense MGP_C57BL6NJ_T0005157.1 MGP_C57BL6NJ_G0004412.1 mouse_genomes_project 6 87069167 87082032 - Vax2os antisense antisense MGP_C57BL6NJ_T0005158.1 MGP_C57BL6NJ_G0004412.1 mouse_genomes_project 6 87073232 87074646 - Vax2os antisense antisense MGP_C57BL6NJ_T0005159.1 MGP_C57BL6NJ_G0004412.1 mouse_genomes_project 6 87073582 87074725 - Vax2os antisense antisense MGP_C57BL6NJ_T0077010.1 MGP_C57BL6NJ_G0030935.1 mouse_genomes_project 6 22995790 23007756 + MGP_C57BL6NJ_P0077010 Hyal6 protein_coding protein_coding MGP_C57BL6NJ_T0081019.1 MGP_C57BL6NJ_G0031824.1 mouse_genomes_project 6 140489235 140490153 - MGP_C57BL6NJ_P0081019 Tas2r121 protein_coding protein_coding MGP_C57BL6NJ_T0081306.1 MGP_C57BL6NJ_G0031896.1 mouse_genomes_project 6 150279619 150325919 + MGP_C57BL6NJ_P0081306 Slco1c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081307.1 MGP_C57BL6NJ_G0031896.1 mouse_genomes_project 6 150279637 150325935 + MGP_C57BL6NJ_P0081307 Slco1c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081308.1 MGP_C57BL6NJ_G0031896.1 mouse_genomes_project 6 150279643 150325937 + MGP_C57BL6NJ_P0081308 Slco1c1 protein_coding protein_coding MGP_C57BL6NJ_T0081309.1 MGP_C57BL6NJ_G0031896.1 mouse_genomes_project 6 150279786 150326328 + MGP_C57BL6NJ_P0081309 Slco1c1 protein_coding protein_coding MGP_C57BL6NJ_T0081310.1 MGP_C57BL6NJ_G0031896.1 mouse_genomes_project 6 150302686 150304986 + Slco1c1 protein_coding retained_intron MGP_C57BL6NJ_T0077612.1 MGP_C57BL6NJ_G0031049.1 mouse_genomes_project 6 39976482 39977424 - MGP_C57BL6NJ_P0077612 Olfr461 protein_coding protein_coding MGP_C57BL6NJ_T0080545.1 MGP_C57BL6NJ_G0031702.1 mouse_genomes_project 6 131499132 131501099 + MGP_C57BL6NJ_P0080545 Spsb2 protein_coding protein_coding MGP_C57BL6NJ_T0080546.1 MGP_C57BL6NJ_G0031702.1 mouse_genomes_project 6 131499356 131500808 + MGP_C57BL6NJ_P0080546 Spsb2 protein_coding protein_coding MGP_C57BL6NJ_T0080547.1 MGP_C57BL6NJ_G0031702.1 mouse_genomes_project 6 131499377 131501099 + MGP_C57BL6NJ_P0080547 Spsb2 protein_coding protein_coding MGP_C57BL6NJ_T0080548.1 MGP_C57BL6NJ_G0031702.1 mouse_genomes_project 6 131499390 131500410 + MGP_C57BL6NJ_P0080548 Spsb2 protein_coding protein_coding MGP_C57BL6NJ_T0080549.1 MGP_C57BL6NJ_G0031702.1 mouse_genomes_project 6 131499769 131501099 + MGP_C57BL6NJ_P0080549 Spsb2 protein_coding protein_coding MGP_C57BL6NJ_T0078307.1 MGP_C57BL6NJ_G0031260.1 mouse_genomes_project 6 61848544 61951924 - MGP_C57BL6NJ_P0078307 Snca protein_coding protein_coding MGP_C57BL6NJ_T0078308.1 MGP_C57BL6NJ_G0031260.1 mouse_genomes_project 6 61848548 61951073 - MGP_C57BL6NJ_P0078308 Snca protein_coding protein_coding MGP_C57BL6NJ_T0078309.1 MGP_C57BL6NJ_G0031260.1 mouse_genomes_project 6 61929785 61949625 - Snca protein_coding processed_transcript MGP_C57BL6NJ_T0078310.1 MGP_C57BL6NJ_G0031260.1 mouse_genomes_project 6 61936915 61950941 - Snca protein_coding retained_intron MGP_C57BL6NJ_T0077103.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27921976 27949351 + MGP_C57BL6NJ_P0077103 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077104.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27921976 27949351 + MGP_C57BL6NJ_P0077104 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077105.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27922026 27950977 + MGP_C57BL6NJ_P0077105 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077106.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27922032 27951524 + MGP_C57BL6NJ_P0077106 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077107.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27930453 27949873 + MGP_C57BL6NJ_P0077107 Calu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077108.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27935443 27948200 + MGP_C57BL6NJ_P0077108 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077109.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27947400 27951958 + MGP_C57BL6NJ_P0077109 Calu protein_coding protein_coding MGP_C57BL6NJ_T0077110.1 MGP_C57BL6NJ_G0030957.1 mouse_genomes_project 6 27948513 27949879 + Calu protein_coding processed_transcript MGP_C57BL6NJ_T0080605.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131663922 131671037 - MGP_C57BL6NJ_P0080605 Cops7a protein_coding protein_coding MGP_C57BL6NJ_T0080606.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131664325 131670947 - MGP_C57BL6NJ_P0080606 Cops7a protein_coding protein_coding MGP_C57BL6NJ_T0080607.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131664743 131665651 - Cops7a protein_coding retained_intron MGP_C57BL6NJ_T0080608.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131665416 131670789 - MGP_C57BL6NJ_P0080608 Cops7a protein_coding protein_coding MGP_C57BL6NJ_T0080609.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131666667 131670907 - MGP_C57BL6NJ_P0080609 Cops7a protein_coding protein_coding MGP_C57BL6NJ_T0080610.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131668132 131670706 - MGP_C57BL6NJ_P0080610 Cops7a protein_coding protein_coding MGP_C57BL6NJ_T0080611.1 MGP_C57BL6NJ_G0031713.1 mouse_genomes_project 6 131670052 131671011 - Cops7a protein_coding retained_intron MGP_C57BL6NJ_T0078688.1 MGP_C57BL6NJ_G0031346.1 mouse_genomes_project 6 86182471 86212841 - MGP_C57BL6NJ_P0078688 Sema4f protein_coding protein_coding MGP_C57BL6NJ_T0078689.1 MGP_C57BL6NJ_G0031346.1 mouse_genomes_project 6 86184670 86188173 - Sema4f protein_coding processed_transcript MGP_C57BL6NJ_T0078690.1 MGP_C57BL6NJ_G0031346.1 mouse_genomes_project 6 86186808 86212841 - Sema4f protein_coding retained_intron MGP_C57BL6NJ_T0078691.1 MGP_C57BL6NJ_G0031346.1 mouse_genomes_project 6 86189187 86212617 - MGP_C57BL6NJ_P0078691 Sema4f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103230.1 MGP_C57BL6NJ_G0041024.1 mouse_genomes_project 6 26993633 26994564 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002825.1 MGP_C57BL6NJ_G0002688.1 mouse_genomes_project 6 40642220 40642894 + MGP_C57BL6NJ_P0002825 Trbv19 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0008888.1 MGP_C57BL6NJ_G0007183.1 mouse_genomes_project 6 121160133 121168635 - Gm44082 lincRNA lincRNA MGP_C57BL6NJ_T0079130.1 MGP_C57BL6NJ_G0031427.1 mouse_genomes_project 6 91120814 91126486 - MGP_C57BL6NJ_P0079130 Gkn3 protein_coding protein_coding MGP_C57BL6NJ_T0077747.1 MGP_C57BL6NJ_G0031108.1 mouse_genomes_project 6 42794492 42799141 + MGP_C57BL6NJ_P0077747 Olfr437 protein_coding protein_coding MGP_C57BL6NJ_T0077748.1 MGP_C57BL6NJ_G0031108.1 mouse_genomes_project 6 42798123 42799141 + MGP_C57BL6NJ_P0077748 Olfr437 protein_coding protein_coding MGP_C57BL6NJ_T0078361.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67249207 67308967 + Prdm5 protein_coding retained_intron MGP_C57BL6NJ_T0078362.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67249207 67412368 + MGP_C57BL6NJ_P0078362 Prdm5 protein_coding protein_coding MGP_C57BL6NJ_T0078363.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67249210 67412293 + MGP_C57BL6NJ_P0078363 Prdm5 protein_coding protein_coding MGP_C57BL6NJ_T0078364.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67249279 67254857 + Prdm5 protein_coding retained_intron MGP_C57BL6NJ_T0078365.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67249286 67412129 + MGP_C57BL6NJ_P0078365 Prdm5 protein_coding protein_coding MGP_C57BL6NJ_T0078366.1 MGP_C57BL6NJ_G0031270.1 mouse_genomes_project 6 67411085 67413005 + Prdm5 protein_coding retained_intron MGP_C57BL6NJ_T0015817.1 MGP_C57BL6NJ_G0013862.1 mouse_genomes_project 6 68260541 68260998 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100554.1 MGP_C57BL6NJ_G0038600.1 mouse_genomes_project 6 132677346 132677456 + Gm24947 snRNA snRNA MGP_C57BL6NJ_T0011933.1 MGP_C57BL6NJ_G0010018.1 mouse_genomes_project 6 129027522 129027634 + Gm26168 misc_RNA misc_RNA MGP_C57BL6NJ_T0008714.1 MGP_C57BL6NJ_G0007053.1 mouse_genomes_project 6 29619271 29663521 + 4930412F09Rik lincRNA lincRNA MGP_C57BL6NJ_T0015669.1 MGP_C57BL6NJ_G0013714.1 mouse_genomes_project 6 17209614 17211778 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101807.1 MGP_C57BL6NJ_G0039853.1 mouse_genomes_project 6 76950731 76950863 + Gm26179 snoRNA snoRNA MGP_C57BL6NJ_T0015927.1 MGP_C57BL6NJ_G0013972.1 mouse_genomes_project 6 106808987 106809772 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008796.1 MGP_C57BL6NJ_G0007109.1 mouse_genomes_project 6 61587812 61588302 + Gm44410 lincRNA lincRNA MGP_C57BL6NJ_T0002711.1 MGP_C57BL6NJ_G0002589.1 mouse_genomes_project 6 41064604 41064655 + MGP_C57BL6NJ_P0002711 Trbj2-2 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0081276.1 MGP_C57BL6NJ_G0031891.1 mouse_genomes_project 6 148650985 148651892 + Capza3 protein_coding processed_transcript MGP_C57BL6NJ_T0081277.1 MGP_C57BL6NJ_G0031891.1 mouse_genomes_project 6 148651290 148652512 + MGP_C57BL6NJ_P0081277 Capza3 protein_coding protein_coding MGP_C57BL6NJ_T0078516.1 MGP_C57BL6NJ_G0031307.1 mouse_genomes_project 6 74655742 74689571 - MGP_C57BL6NJ_P0078516 Atoh8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078517.1 MGP_C57BL6NJ_G0031307.1 mouse_genomes_project 6 74655742 74690611 - MGP_C57BL6NJ_P0078517 Atoh8 protein_coding protein_coding MGP_C57BL6NJ_T0078518.1 MGP_C57BL6NJ_G0031307.1 mouse_genomes_project 6 74676124 74690264 - Atoh8 protein_coding processed_transcript MGP_C57BL6NJ_T0077229.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29172602 29204027 - MGP_C57BL6NJ_P0077229 Tmem209 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077230.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29174346 29204038 - MGP_C57BL6NJ_P0077230 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0077231.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29174571 29204039 - MGP_C57BL6NJ_P0077231 Tmem209 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077232.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29174777 29204106 - MGP_C57BL6NJ_P0077232 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0077233.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29175964 29204041 - MGP_C57BL6NJ_P0077233 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0077234.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29176350 29204038 - MGP_C57BL6NJ_P0077234 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0077235.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29183906 29185730 - Tmem209 protein_coding retained_intron MGP_C57BL6NJ_T0077236.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29195553 29204072 - MGP_C57BL6NJ_P0077236 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0077237.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29199071 29204045 - Tmem209 protein_coding retained_intron MGP_C57BL6NJ_T0077238.1 MGP_C57BL6NJ_G0030974.1 mouse_genomes_project 6 29200074 29204047 - MGP_C57BL6NJ_P0077238 Tmem209 protein_coding protein_coding MGP_C57BL6NJ_T0079601.1 MGP_C57BL6NJ_G0031525.1 mouse_genomes_project 6 105194279 105305283 - MGP_C57BL6NJ_P0079601 Shq1 protein_coding protein_coding MGP_C57BL6NJ_T0079602.1 MGP_C57BL6NJ_G0031525.1 mouse_genomes_project 6 105200726 105305283 - MGP_C57BL6NJ_P0079602 Shq1 protein_coding protein_coding MGP_C57BL6NJ_T0079603.1 MGP_C57BL6NJ_G0031525.1 mouse_genomes_project 6 105200727 105305265 - MGP_C57BL6NJ_P0079603 Shq1 protein_coding protein_coding MGP_C57BL6NJ_T0079604.1 MGP_C57BL6NJ_G0031525.1 mouse_genomes_project 6 105296924 105305259 - Shq1 protein_coding processed_transcript MGP_C57BL6NJ_T0077049.1 MGP_C57BL6NJ_G0030945.1 mouse_genomes_project 6 26946456 26951067 + MGP_C57BL6NJ_P0077049 Arf5 protein_coding protein_coding MGP_C57BL6NJ_T0077050.1 MGP_C57BL6NJ_G0030945.1 mouse_genomes_project 6 26946486 26950811 + MGP_C57BL6NJ_P0077050 Arf5 protein_coding protein_coding MGP_C57BL6NJ_T0077051.1 MGP_C57BL6NJ_G0030945.1 mouse_genomes_project 6 26946605 26949092 + Arf5 protein_coding retained_intron MGP_C57BL6NJ_T0080481.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131338715 131391405 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080482.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131338715 131391453 + MGP_C57BL6NJ_P0080482 Lpcat3 protein_coding protein_coding MGP_C57BL6NJ_T0080483.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131338860 131389325 + MGP_C57BL6NJ_P0080483 Lpcat3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080484.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131338869 131382588 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080485.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131338903 131383647 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080486.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131384505 131389648 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080487.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131389291 131390093 + Lpcat3 protein_coding processed_transcript MGP_C57BL6NJ_T0080488.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131389789 131390963 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080489.1 MGP_C57BL6NJ_G0031693.1 mouse_genomes_project 6 131390039 131391052 + Lpcat3 protein_coding retained_intron MGP_C57BL6NJ_T0080998.1 MGP_C57BL6NJ_G0031810.1 mouse_genomes_project 6 138914290 138937969 - MGP_C57BL6NJ_P0080998 Ybx3 protein_coding protein_coding MGP_C57BL6NJ_T0080999.1 MGP_C57BL6NJ_G0031810.1 mouse_genomes_project 6 138914290 138937931 - MGP_C57BL6NJ_P0080999 Ybx3 protein_coding protein_coding MGP_C57BL6NJ_T0081000.1 MGP_C57BL6NJ_G0031810.1 mouse_genomes_project 6 138914525 138927740 - Ybx3 protein_coding processed_transcript MGP_C57BL6NJ_T0081001.1 MGP_C57BL6NJ_G0031810.1 mouse_genomes_project 6 138914535 138918513 - Ybx3 protein_coding retained_intron MGP_C57BL6NJ_T0081002.1 MGP_C57BL6NJ_G0031810.1 mouse_genomes_project 6 138925660 138928001 - Ybx3 protein_coding processed_transcript MGP_C57BL6NJ_T0077076.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27681742 27723106 - MGP_C57BL6NJ_P0077076 Rbm28 protein_coding protein_coding MGP_C57BL6NJ_T0077077.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27683308 27713192 - Rbm28 protein_coding retained_intron MGP_C57BL6NJ_T0077078.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27683347 27689565 - MGP_C57BL6NJ_P0077078 Rbm28 protein_coding protein_coding MGP_C57BL6NJ_T0077079.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27695801 27710951 - Rbm28 protein_coding retained_intron MGP_C57BL6NJ_T0077080.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27714780 27718257 - Rbm28 protein_coding retained_intron MGP_C57BL6NJ_T0077081.1 MGP_C57BL6NJ_G0030951.1 mouse_genomes_project 6 27715190 27718032 - Rbm28 protein_coding retained_intron MGP_C57BL6NJ_T0099498.1 MGP_C57BL6NJ_G0037551.1 mouse_genomes_project 6 92167890 92168355 - Gm44265 sense_intronic sense_intronic MGP_C57BL6NJ_T0002834.1 MGP_C57BL6NJ_G0002694.1 mouse_genomes_project 6 40734796 40735411 + MGP_C57BL6NJ_P0002834 Trbv30 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002835.1 MGP_C57BL6NJ_G0002694.1 mouse_genomes_project 6 40734796 40735411 + MGP_C57BL6NJ_P0002835 Trbv30 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0079668.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113383683 113728207 + MGP_C57BL6NJ_P0079668 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079669.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113383684 113728215 + MGP_C57BL6NJ_P0079669 Itpr1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079670.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113383789 113728207 + MGP_C57BL6NJ_P0079670 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079671.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113425205 113564115 + Itpr1 protein_coding retained_intron MGP_C57BL6NJ_T0079672.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113526454 113548102 + MGP_C57BL6NJ_P0079672 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079673.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113586490 113590222 + Itpr1 protein_coding retained_intron MGP_C57BL6NJ_T0079674.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113588024 113613934 + MGP_C57BL6NJ_P0079674 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079675.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113588091 113650312 + MGP_C57BL6NJ_P0079675 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079676.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113589097 113613889 + MGP_C57BL6NJ_P0079676 Itpr1 protein_coding protein_coding MGP_C57BL6NJ_T0079677.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113634118 113647801 + Itpr1 protein_coding processed_transcript MGP_C57BL6NJ_T0079678.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113670273 113676105 + Itpr1 protein_coding retained_intron MGP_C57BL6NJ_T0079679.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113684825 113689542 + Itpr1 protein_coding retained_intron MGP_C57BL6NJ_T0079680.1 MGP_C57BL6NJ_G0031539.1 mouse_genomes_project 6 113695392 113696333 + Itpr1 protein_coding retained_intron MGP_C57BL6NJ_T0008903.1 MGP_C57BL6NJ_G0007196.1 mouse_genomes_project 6 127372599 127390023 - Gm44148 lincRNA lincRNA MGP_C57BL6NJ_T0015860.1 MGP_C57BL6NJ_G0013905.1 mouse_genomes_project 6 77894221 77895204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005229.1 MGP_C57BL6NJ_G0004455.1 mouse_genomes_project 6 119559695 119607814 + Gm15083 antisense antisense MGP_C57BL6NJ_T0000238.1 MGP_C57BL6NJ_G0000177.1 mouse_genomes_project 6 70796390 70797157 - MGP_C57BL6NJ_P0000238 Igkv1-88 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015979.1 MGP_C57BL6NJ_G0014024.1 mouse_genomes_project 6 125867301 125868185 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079933.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120586467 120624215 - MGP_C57BL6NJ_P0079933 Tamm41 protein_coding protein_coding MGP_C57BL6NJ_T0079934.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120586474 120595666 - Tamm41 protein_coding retained_intron MGP_C57BL6NJ_T0079935.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120591321 120599504 - Tamm41 protein_coding retained_intron MGP_C57BL6NJ_T0079936.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120593973 120618603 - MGP_C57BL6NJ_P0079936 Tamm41 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079937.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120595345 120624194 - MGP_C57BL6NJ_P0079937 Tamm41 protein_coding protein_coding MGP_C57BL6NJ_T0079938.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120599331 120624164 - MGP_C57BL6NJ_P0079938 Tamm41 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079939.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120611059 120624215 - Tamm41 protein_coding retained_intron MGP_C57BL6NJ_T0079940.1 MGP_C57BL6NJ_G0031583.1 mouse_genomes_project 6 120617616 120618604 - Tamm41 protein_coding processed_transcript MGP_C57BL6NJ_T0011050.1 MGP_C57BL6NJ_G0009135.1 mouse_genomes_project 6 119053822 119053947 - Gm23365 miRNA miRNA MGP_C57BL6NJ_T0015935.1 MGP_C57BL6NJ_G0013980.1 mouse_genomes_project 6 110486068 110486376 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000437.1 MGP_C57BL6NJ_G0000356.1 mouse_genomes_project 6 71347555 71348028 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015889.1 MGP_C57BL6NJ_G0013934.1 mouse_genomes_project 6 89084493 89084962 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101819.1 MGP_C57BL6NJ_G0039865.1 mouse_genomes_project 6 110163256 110163395 + Gm23339 snoRNA snoRNA MGP_C57BL6NJ_T0080445.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129763283 129771365 - MGP_C57BL6NJ_P0080445 Clec4e protein_coding protein_coding MGP_C57BL6NJ_T0080446.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129763443 129771364 - Clec4e protein_coding retained_intron MGP_C57BL6NJ_T0080447.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129763639 129771365 - Clec4e protein_coding retained_intron MGP_C57BL6NJ_T0080448.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129764162 129771365 - Clec4e protein_coding retained_intron MGP_C57BL6NJ_T0080449.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129764985 129771365 - MGP_C57BL6NJ_P0080449 Clec4e protein_coding protein_coding MGP_C57BL6NJ_T0080450.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129765188 129771361 - MGP_C57BL6NJ_P0080450 Clec4e protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080451.1 MGP_C57BL6NJ_G0031682.1 mouse_genomes_project 6 129769271 129771365 - Clec4e protein_coding processed_transcript MGP_C57BL6NJ_T0077804.1 MGP_C57BL6NJ_G0031122.1 mouse_genomes_project 6 47759873 47768018 + Zfp398 protein_coding retained_intron MGP_C57BL6NJ_T0077805.1 MGP_C57BL6NJ_G0031122.1 mouse_genomes_project 6 47759876 47790828 + MGP_C57BL6NJ_P0077805 Zfp398 protein_coding protein_coding MGP_C57BL6NJ_T0077806.1 MGP_C57BL6NJ_G0031122.1 mouse_genomes_project 6 47759907 47796675 + MGP_C57BL6NJ_P0077806 Zfp398 protein_coding protein_coding MGP_C57BL6NJ_T0005269.1 MGP_C57BL6NJ_G0004491.1 mouse_genomes_project 6 144084644 144097169 + Gm14330 antisense antisense MGP_C57BL6NJ_T0011904.1 MGP_C57BL6NJ_G0009989.1 mouse_genomes_project 6 52534021 52534235 + Gm27861 misc_RNA misc_RNA MGP_C57BL6NJ_T0080383.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128879880 128889662 + MGP_C57BL6NJ_P0080383 Mfap5 protein_coding protein_coding MGP_C57BL6NJ_T0080384.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128887869 128902934 + MGP_C57BL6NJ_P0080384 Mfap5 protein_coding protein_coding MGP_C57BL6NJ_T0080385.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128887945 128902800 + MGP_C57BL6NJ_P0080385 Mfap5 protein_coding protein_coding MGP_C57BL6NJ_T0080386.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128887962 128902506 + MGP_C57BL6NJ_P0080386 Mfap5 protein_coding protein_coding MGP_C57BL6NJ_T0080387.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128887997 128902599 + MGP_C57BL6NJ_P0080387 Mfap5 protein_coding protein_coding MGP_C57BL6NJ_T0080388.1 MGP_C57BL6NJ_G0031664.1 mouse_genomes_project 6 128896604 128902803 + Mfap5 protein_coding retained_intron MGP_C57BL6NJ_T0002305.1 MGP_C57BL6NJ_G0002195.1 mouse_genomes_project 6 145331988 145332791 + TEC TEC MGP_C57BL6NJ_T0000405.1 MGP_C57BL6NJ_G0000324.1 mouse_genomes_project 6 69915786 69916253 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0077741.1 MGP_C57BL6NJ_G0031103.1 mouse_genomes_project 6 42461028 42461961 + MGP_C57BL6NJ_P0077741 Olfr447 protein_coding protein_coding MGP_C57BL6NJ_T0002314.1 MGP_C57BL6NJ_G0002204.1 mouse_genomes_project 6 150087549 150091384 + TEC TEC MGP_C57BL6NJ_T0015813.1 MGP_C57BL6NJ_G0013858.1 mouse_genomes_project 6 67931325 67931551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016085.1 MGP_C57BL6NJ_G0014130.1 mouse_genomes_project 6 148756230 148756672 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078245.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58398746 58487067 + MGP_C57BL6NJ_P0078245 Herc6 protein_coding protein_coding MGP_C57BL6NJ_T0078246.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58398754 58403291 + MGP_C57BL6NJ_P0078246 Herc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078247.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58421917 58449023 + Herc6 protein_coding retained_intron MGP_C57BL6NJ_T0078248.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58424355 58429846 + Herc6 protein_coding retained_intron MGP_C57BL6NJ_T0078249.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58426390 58440805 + Herc6 protein_coding retained_intron MGP_C57BL6NJ_T0078250.1 MGP_C57BL6NJ_G0031239.1 mouse_genomes_project 6 58429783 58442062 + Herc6 protein_coding retained_intron MGP_C57BL6NJ_T0002135.1 MGP_C57BL6NJ_G0002026.1 mouse_genomes_project 6 58684003 58686730 + TEC TEC MGP_C57BL6NJ_T0080193.1 MGP_C57BL6NJ_G0031633.1 mouse_genomes_project 6 125426237 125429119 + MGP_C57BL6NJ_P0080193 Fbxl14 protein_coding protein_coding MGP_C57BL6NJ_T0005238.1 MGP_C57BL6NJ_G0004464.1 mouse_genomes_project 6 129256337 129265517 - Gm26826 antisense antisense MGP_C57BL6NJ_T0000435.1 MGP_C57BL6NJ_G0000354.1 mouse_genomes_project 6 71163508 71164042 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015801.1 MGP_C57BL6NJ_G0013846.1 mouse_genomes_project 6 66671887 66672238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015931.1 MGP_C57BL6NJ_G0013976.1 mouse_genomes_project 6 108365224 108366182 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008962.1 MGP_C57BL6NJ_G0007238.1 mouse_genomes_project 6 156829389 156841495 + 1700049E15Rik lincRNA lincRNA MGP_C57BL6NJ_T0008963.1 MGP_C57BL6NJ_G0007238.1 mouse_genomes_project 6 156833875 156841469 + 1700049E15Rik lincRNA lincRNA MGP_C57BL6NJ_T0015761.1 MGP_C57BL6NJ_G0013806.1 mouse_genomes_project 6 51229989 51230227 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000209.1 MGP_C57BL6NJ_G0000155.1 mouse_genomes_project 6 69669606 69670073 - MGP_C57BL6NJ_P0000209 Igkv9-124 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000210.1 MGP_C57BL6NJ_G0000155.1 mouse_genomes_project 6 69669606 69669893 - MGP_C57BL6NJ_P0000210 Igkv9-124 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000411.1 MGP_C57BL6NJ_G0000330.1 mouse_genomes_project 6 70182801 70183456 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000289.1 MGP_C57BL6NJ_G0000215.1 mouse_genomes_project 6 72635531 72636055 - MGP_C57BL6NJ_P0000289 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011931.1 MGP_C57BL6NJ_G0010016.1 mouse_genomes_project 6 121412144 121412394 - Gm27853 misc_RNA misc_RNA MGP_C57BL6NJ_T0015815.1 MGP_C57BL6NJ_G0013860.1 mouse_genomes_project 6 68058142 68060057 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080404.1 MGP_C57BL6NJ_G0031669.1 mouse_genomes_project 6 129139305 129148792 + MGP_C57BL6NJ_P0080404 Nanog protein_coding protein_coding MGP_C57BL6NJ_T0080405.1 MGP_C57BL6NJ_G0031669.1 mouse_genomes_project 6 129139381 129148792 + MGP_C57BL6NJ_P0080405 Nanog protein_coding protein_coding MGP_C57BL6NJ_T0080406.1 MGP_C57BL6NJ_G0031669.1 mouse_genomes_project 6 129139384 129148792 + MGP_C57BL6NJ_P0080406 Nanog protein_coding protein_coding MGP_C57BL6NJ_T0079322.1 MGP_C57BL6NJ_G0031465.1 mouse_genomes_project 6 93937701 93938610 + MGP_C57BL6NJ_P0079322 protein_coding protein_coding MGP_C57BL6NJ_T0005108.1 MGP_C57BL6NJ_G0004379.1 mouse_genomes_project 6 43119889 43126206 + 9430018G01Rik antisense antisense MGP_C57BL6NJ_T0011919.1 MGP_C57BL6NJ_G0010004.1 mouse_genomes_project 6 86948906 86949229 - Gm24990 misc_RNA misc_RNA MGP_C57BL6NJ_T0002147.1 MGP_C57BL6NJ_G0002038.1 mouse_genomes_project 6 74241161 74241787 - TEC TEC MGP_C57BL6NJ_T0102542.1 MGP_C57BL6NJ_G0040388.1 mouse_genomes_project 6 138722525 138740941 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102543.1 MGP_C57BL6NJ_G0040388.1 mouse_genomes_project 6 138724607 138741817 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0081428.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154143987 154208697 + MGP_C57BL6NJ_P0081428 Lrmp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081429.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154150072 154208703 + MGP_C57BL6NJ_P0081429 Lrmp protein_coding protein_coding MGP_C57BL6NJ_T0081430.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154150075 154199412 + Lrmp protein_coding retained_intron MGP_C57BL6NJ_T0081431.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154150114 154191678 + Lrmp protein_coding retained_intron MGP_C57BL6NJ_T0081432.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154167082 154191125 + MGP_C57BL6NJ_P0081432 Lrmp protein_coding protein_coding MGP_C57BL6NJ_T0081433.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154175005 154188124 + Lrmp protein_coding retained_intron MGP_C57BL6NJ_T0081434.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154175005 154191691 + MGP_C57BL6NJ_P0081434 Lrmp protein_coding protein_coding MGP_C57BL6NJ_T0081435.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154175008 154208697 + MGP_C57BL6NJ_P0081435 Lrmp protein_coding protein_coding MGP_C57BL6NJ_T0081436.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154187210 154202572 + Lrmp protein_coding processed_transcript MGP_C57BL6NJ_T0081437.1 MGP_C57BL6NJ_G0031920.1 mouse_genomes_project 6 154200364 154208446 + Lrmp protein_coding retained_intron MGP_C57BL6NJ_T0079858.1 MGP_C57BL6NJ_G0031571.1 mouse_genomes_project 6 119135698 119147878 + MGP_C57BL6NJ_P0079858 Brk1 protein_coding protein_coding MGP_C57BL6NJ_T0101776.1 MGP_C57BL6NJ_G0039822.1 mouse_genomes_project 6 11615305 11615421 + Gm23760 snoRNA snoRNA MGP_C57BL6NJ_T0000441.1 MGP_C57BL6NJ_G0000360.1 mouse_genomes_project 6 71397093 71397606 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0080520.1 MGP_C57BL6NJ_G0031698.1 mouse_genomes_project 6 131432797 131449672 - MGP_C57BL6NJ_P0080520 Atn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015871.1 MGP_C57BL6NJ_G0013916.1 mouse_genomes_project 6 84556115 84556568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078703.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334316 86337621 - MGP_C57BL6NJ_P0078703 Htra2 protein_coding protein_coding MGP_C57BL6NJ_T0078704.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334316 86337621 - MGP_C57BL6NJ_P0078704 Htra2 protein_coding protein_coding MGP_C57BL6NJ_T0078705.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334316 86337492 - MGP_C57BL6NJ_P0078705 Htra2 protein_coding protein_coding MGP_C57BL6NJ_T0078706.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334330 86337621 - MGP_C57BL6NJ_P0078706 Htra2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078707.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334334 86338323 - Htra2 protein_coding retained_intron MGP_C57BL6NJ_T0078708.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334437 86336736 - MGP_C57BL6NJ_P0078708 Htra2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078709.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334527 86336887 - MGP_C57BL6NJ_P0078709 Htra2 protein_coding protein_coding MGP_C57BL6NJ_T0078710.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334536 86336887 - Htra2 protein_coding retained_intron MGP_C57BL6NJ_T0078711.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86334798 86337087 - MGP_C57BL6NJ_P0078711 Htra2 protein_coding protein_coding MGP_C57BL6NJ_T0078712.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86336087 86338215 - Htra2 protein_coding processed_transcript MGP_C57BL6NJ_T0078713.1 MGP_C57BL6NJ_G0031350.1 mouse_genomes_project 6 86336196 86336935 - Htra2 protein_coding processed_transcript MGP_C57BL6NJ_T0078227.1 MGP_C57BL6NJ_G0031223.1 mouse_genomes_project 6 57766113 57766780 - MGP_C57BL6NJ_P0078227 protein_coding protein_coding MGP_C57BL6NJ_T0078692.1 MGP_C57BL6NJ_G0031347.1 mouse_genomes_project 6 86220045 86312338 + MGP_C57BL6NJ_P0078692 M1ap protein_coding protein_coding MGP_C57BL6NJ_T0078693.1 MGP_C57BL6NJ_G0031347.1 mouse_genomes_project 6 86308490 86312464 + MGP_C57BL6NJ_P0078693 M1ap protein_coding protein_coding MGP_C57BL6NJ_T0078694.1 MGP_C57BL6NJ_G0031347.1 mouse_genomes_project 6 86310403 86311978 + M1ap protein_coding retained_intron MGP_C57BL6NJ_T0081356.1 MGP_C57BL6NJ_G0031908.1 mouse_genomes_project 6 151241350 151249750 + MGP_C57BL6NJ_P0081356 Spx protein_coding unknown_likely_coding MGP_C57BL6NJ_T0081357.1 MGP_C57BL6NJ_G0031908.1 mouse_genomes_project 6 151243367 151249750 + MGP_C57BL6NJ_P0081357 Spx protein_coding protein_coding MGP_C57BL6NJ_T0081358.1 MGP_C57BL6NJ_G0031908.1 mouse_genomes_project 6 151243938 151250909 + Spx protein_coding retained_intron MGP_C57BL6NJ_T0081359.1 MGP_C57BL6NJ_G0031908.1 mouse_genomes_project 6 151244447 151250909 + Spx protein_coding retained_intron MGP_C57BL6NJ_T0002705.1 MGP_C57BL6NJ_G0002584.1 mouse_genomes_project 6 41056518 41056569 + MGP_C57BL6NJ_P0002705 Trbj1-4 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0008880.1 MGP_C57BL6NJ_G0007175.1 mouse_genomes_project 6 110632931 110637449 - Gm15631 lincRNA lincRNA MGP_C57BL6NJ_T0005205.1 MGP_C57BL6NJ_G0004439.1 mouse_genomes_project 6 102524889 102657336 + Gm32592 antisense antisense MGP_C57BL6NJ_T0078926.1 MGP_C57BL6NJ_G0031387.1 mouse_genomes_project 6 88624858 88644997 - MGP_C57BL6NJ_P0078926 Spr protein_coding protein_coding MGP_C57BL6NJ_T0078927.1 MGP_C57BL6NJ_G0031387.1 mouse_genomes_project 6 88624867 88644987 - MGP_C57BL6NJ_P0078927 Spr protein_coding protein_coding MGP_C57BL6NJ_T0078928.1 MGP_C57BL6NJ_G0031387.1 mouse_genomes_project 6 88625180 88644993 - MGP_C57BL6NJ_P0078928 Spr protein_coding protein_coding MGP_C57BL6NJ_T0002099.1 MGP_C57BL6NJ_G0001990.1 mouse_genomes_project 6 44884928 44888688 + TEC TEC MGP_C57BL6NJ_T0078671.1 MGP_C57BL6NJ_G0031341.1 mouse_genomes_project 6 85166746 85176781 - MGP_C57BL6NJ_P0078671 Mrpl19 protein_coding protein_coding MGP_C57BL6NJ_T0078672.1 MGP_C57BL6NJ_G0031341.1 mouse_genomes_project 6 85172819 85173681 - Mrpl19 protein_coding retained_intron MGP_C57BL6NJ_T0078673.1 MGP_C57BL6NJ_G0031341.1 mouse_genomes_project 6 85173244 85176464 - Mrpl19 protein_coding processed_transcript MGP_C57BL6NJ_T0100542.1 MGP_C57BL6NJ_G0038588.1 mouse_genomes_project 6 108659383 108659449 - Gm25656 snRNA snRNA MGP_C57BL6NJ_T0077095.1 MGP_C57BL6NJ_G0030955.1 mouse_genomes_project 6 27841037 27851865 + MGP_C57BL6NJ_P0077095 Fam71f2 protein_coding protein_coding MGP_C57BL6NJ_T0077096.1 MGP_C57BL6NJ_G0030955.1 mouse_genomes_project 6 27842585 27856724 + MGP_C57BL6NJ_P0077096 Fam71f2 protein_coding protein_coding MGP_C57BL6NJ_T0077097.1 MGP_C57BL6NJ_G0030955.1 mouse_genomes_project 6 27842587 27856719 + MGP_C57BL6NJ_P0077097 Fam71f2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000431.1 MGP_C57BL6NJ_G0000350.1 mouse_genomes_project 6 71139602 71139967 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0002174.1 MGP_C57BL6NJ_G0002065.1 mouse_genomes_project 6 83598051 83600754 + TEC TEC MGP_C57BL6NJ_T0011935.1 MGP_C57BL6NJ_G0010020.1 mouse_genomes_project 6 149195643 149195896 + Gm25780 misc_RNA misc_RNA MGP_C57BL6NJ_T0002118.1 MGP_C57BL6NJ_G0002009.1 mouse_genomes_project 6 46393121 46395596 + TEC TEC MGP_C57BL6NJ_T0002200.1 MGP_C57BL6NJ_G0002091.1 mouse_genomes_project 6 91552178 91555322 - TEC TEC MGP_C57BL6NJ_T0078431.1 MGP_C57BL6NJ_G0031292.1 mouse_genomes_project 6 73543798 73548995 + MGP_C57BL6NJ_P0078431 Fabp1 protein_coding protein_coding MGP_C57BL6NJ_T0078432.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73557911 73624618 - MGP_C57BL6NJ_P0078432 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0078433.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73557913 73624590 - MGP_C57BL6NJ_P0078433 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0078434.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73559348 73685914 - MGP_C57BL6NJ_P0078434 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0078435.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73559506 73560881 - MGP_C57BL6NJ_P0078435 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0078436.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73612634 73624569 - MGP_C57BL6NJ_P0078436 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0078441.1 MGP_C57BL6NJ_G0031293.1 mouse_genomes_project 6 73675303 73685887 - MGP_C57BL6NJ_P0078441 Smyd1 protein_coding protein_coding MGP_C57BL6NJ_T0101827.1 MGP_C57BL6NJ_G0039873.1 mouse_genomes_project 6 130029171 130029303 - Gm22722 snoRNA snoRNA MGP_C57BL6NJ_T0008973.1 MGP_C57BL6NJ_G0007247.1 mouse_genomes_project 6 158825042 158825915 + Gm21814 lincRNA lincRNA MGP_C57BL6NJ_T0008974.1 MGP_C57BL6NJ_G0007247.1 mouse_genomes_project 6 158825084 158842258 + Gm21814 lincRNA lincRNA MGP_C57BL6NJ_T0008975.1 MGP_C57BL6NJ_G0007247.1 mouse_genomes_project 6 158840778 158842423 + Gm21814 lincRNA lincRNA MGP_C57BL6NJ_T0077478.1 MGP_C57BL6NJ_G0031020.1 mouse_genomes_project 6 37495492 37507302 - MGP_C57BL6NJ_P0077478 Zc3hav1l protein_coding protein_coding MGP_C57BL6NJ_T0015970.1 MGP_C57BL6NJ_G0014015.1 mouse_genomes_project 6 122214022 122214542 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081383.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151883812 151977168 - MGP_C57BL6NJ_P0081383 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081384.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151883812 151977168 - MGP_C57BL6NJ_P0081384 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081385.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151883817 151977151 - MGP_C57BL6NJ_P0081385 C2cd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081386.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151883820 151976836 - MGP_C57BL6NJ_P0081386 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081387.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151884374 151976827 - MGP_C57BL6NJ_P0081387 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081388.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151884625 151977132 - MGP_C57BL6NJ_P0081388 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081389.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151884631 151886605 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081390.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151884829 151977066 - MGP_C57BL6NJ_P0081390 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081391.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151892848 151895841 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081392.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151901306 151977168 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081393.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151917642 151944137 - MGP_C57BL6NJ_P0081393 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081394.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151924313 151927658 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081395.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151947631 151976909 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081396.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151949704 151958483 - C2cd5 protein_coding processed_transcript MGP_C57BL6NJ_T0081397.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151955049 151957029 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0081398.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151955416 151977202 - MGP_C57BL6NJ_P0081398 C2cd5 protein_coding protein_coding MGP_C57BL6NJ_T0081399.1 MGP_C57BL6NJ_G0031916.1 mouse_genomes_project 6 151959913 151977139 - C2cd5 protein_coding retained_intron MGP_C57BL6NJ_T0008832.1 MGP_C57BL6NJ_G0007139.1 mouse_genomes_project 6 87988721 87989167 + 4930504D19Rik lincRNA lincRNA MGP_C57BL6NJ_T0008782.1 MGP_C57BL6NJ_G0007098.1 mouse_genomes_project 6 52646396 52651213 + Hottip lincRNA lincRNA MGP_C57BL6NJ_T0008783.1 MGP_C57BL6NJ_G0007098.1 mouse_genomes_project 6 52646405 52650689 + Hottip lincRNA lincRNA MGP_C57BL6NJ_T0015696.1 MGP_C57BL6NJ_G0013741.1 mouse_genomes_project 6 28589602 28589809 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000440.1 MGP_C57BL6NJ_G0000359.1 mouse_genomes_project 6 71381106 71381408 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079726.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118569759 118603088 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079727.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118569759 118649430 + MGP_C57BL6NJ_P0079727 Setd5 protein_coding protein_coding MGP_C57BL6NJ_T0079728.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118571570 118601846 + Setd5 protein_coding processed_transcript MGP_C57BL6NJ_T0079729.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118571611 118613144 + Setd5 protein_coding processed_transcript MGP_C57BL6NJ_T0079730.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118571648 118649419 + MGP_C57BL6NJ_P0079730 Setd5 protein_coding protein_coding MGP_C57BL6NJ_T0079731.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118600461 118633802 + Setd5 protein_coding processed_transcript MGP_C57BL6NJ_T0079732.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118600563 118649430 + MGP_C57BL6NJ_P0079732 Setd5 protein_coding protein_coding MGP_C57BL6NJ_T0079733.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118604399 118613458 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079734.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118605051 118647465 + MGP_C57BL6NJ_P0079734 Setd5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079735.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118605391 118647830 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079736.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118605943 118609216 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079737.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118605943 118613113 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079738.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118620875 118625909 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079739.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118623275 118647851 + Setd5 protein_coding retained_intron MGP_C57BL6NJ_T0079740.1 MGP_C57BL6NJ_G0031551.1 mouse_genomes_project 6 118624207 118634038 + Setd5 protein_coding processed_transcript MGP_C57BL6NJ_T0005294.1 MGP_C57BL6NJ_G0004512.1 mouse_genomes_project 6 157506039 157509358 + Gm44020 antisense antisense MGP_C57BL6NJ_T0080782.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134015022 134042332 - MGP_C57BL6NJ_P0080782 Ccnd2 protein_coding protein_coding MGP_C57BL6NJ_T0080783.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134020391 134030388 - Ccnd2 protein_coding processed_transcript MGP_C57BL6NJ_T0080784.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134030328 134037924 - Ccnd2 protein_coding processed_transcript MGP_C57BL6NJ_T0080785.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134037258 134043465 - MGP_C57BL6NJ_P0080785 Ccnd2 protein_coding protein_coding MGP_C57BL6NJ_T0080786.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134038773 134042279 - Ccnd2 protein_coding retained_intron MGP_C57BL6NJ_T0080787.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134039554 134042305 - MGP_C57BL6NJ_P0080787 Ccnd2 protein_coding protein_coding MGP_C57BL6NJ_T0080788.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134039571 134042279 - MGP_C57BL6NJ_P0080788 Ccnd2 protein_coding protein_coding MGP_C57BL6NJ_T0080789.1 MGP_C57BL6NJ_G0031748.1 mouse_genomes_project 6 134042052 134042233 - Ccnd2 protein_coding processed_transcript MGP_C57BL6NJ_T0077164.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28384051 28385850 + MGP_C57BL6NJ_P0077164 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077165.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28385565 28485798 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077166.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28385614 28532066 + MGP_C57BL6NJ_P0077166 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077167.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28385620 28387766 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077168.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28385632 28532072 + MGP_C57BL6NJ_P0077168 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077169.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28385650 28489534 + MGP_C57BL6NJ_P0077169 Ahcyl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077170.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28417817 28502595 + MGP_C57BL6NJ_P0077170 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077171.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28472139 28528971 + MGP_C57BL6NJ_P0077171 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077172.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28472146 28481615 + MGP_C57BL6NJ_P0077172 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077173.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28472148 28489546 + MGP_C57BL6NJ_P0077173 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077174.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28472153 28499501 + MGP_C57BL6NJ_P0077174 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077175.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28472270 28485798 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077176.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28477757 28532060 + MGP_C57BL6NJ_P0077176 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077177.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28478063 28502604 + MGP_C57BL6NJ_P0077177 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077178.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28478088 28502597 + MGP_C57BL6NJ_P0077178 Ahcyl2 protein_coding protein_coding MGP_C57BL6NJ_T0077179.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28483765 28490136 + Ahcyl2 protein_coding processed_transcript MGP_C57BL6NJ_T0077180.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28489209 28532065 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077181.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28495600 28497991 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077182.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28513758 28516164 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077183.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28516316 28528811 + Ahcyl2 protein_coding retained_intron MGP_C57BL6NJ_T0077184.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28523021 28528963 + Ahcyl2 protein_coding processed_transcript MGP_C57BL6NJ_T0077185.1 MGP_C57BL6NJ_G0030968.1 mouse_genomes_project 6 28523493 28528907 + Ahcyl2 protein_coding processed_transcript MGP_C57BL6NJ_T0076993.1 MGP_C57BL6NJ_G0030928.1 mouse_genomes_project 6 22207577 22208477 - MGP_C57BL6NJ_P0076993 Tas2r118 protein_coding protein_coding MGP_C57BL6NJ_T0016083.1 MGP_C57BL6NJ_G0014128.1 mouse_genomes_project 6 148669888 148670300 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011033.1 MGP_C57BL6NJ_G0009118.1 mouse_genomes_project 6 86379526 86379603 - Mir3470a miRNA miRNA MGP_C57BL6NJ_T0011074.1 MGP_C57BL6NJ_G0009159.1 mouse_genomes_project 6 146336366 146336480 - Gm24308 miRNA miRNA MGP_C57BL6NJ_T0076806.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11056905 11086143 - MGP_C57BL6NJ_P0076806 Tmem168 protein_coding protein_coding MGP_C57BL6NJ_T0076807.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11059005 11086003 - MGP_C57BL6NJ_P0076807 Tmem168 protein_coding protein_coding MGP_C57BL6NJ_T0076808.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11081424 11085791 - Tmem168 protein_coding processed_transcript MGP_C57BL6NJ_T0076809.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11081440 11086048 - Tmem168 protein_coding processed_transcript MGP_C57BL6NJ_T0076810.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11083977 11086087 - Tmem168 protein_coding processed_transcript MGP_C57BL6NJ_T0076811.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11084641 11086062 - Tmem168 protein_coding processed_transcript MGP_C57BL6NJ_T0076812.1 MGP_C57BL6NJ_G0030896.1 mouse_genomes_project 6 11085330 11086070 - Tmem168 protein_coding processed_transcript MGP_C57BL6NJ_T0005095.1 MGP_C57BL6NJ_G0004368.1 mouse_genomes_project 6 38182422 38251800 - Gm42962 antisense antisense MGP_C57BL6NJ_T0008875.1 MGP_C57BL6NJ_G0007172.1 mouse_genomes_project 6 106487830 106515689 + Gm9871 lincRNA lincRNA MGP_C57BL6NJ_T0008876.1 MGP_C57BL6NJ_G0007172.1 mouse_genomes_project 6 106496137 106515522 + Gm9871 lincRNA lincRNA MGP_C57BL6NJ_T0008877.1 MGP_C57BL6NJ_G0007172.1 mouse_genomes_project 6 106509931 106515317 + Gm9871 lincRNA lincRNA MGP_C57BL6NJ_T0015773.1 MGP_C57BL6NJ_G0013818.1 mouse_genomes_project 6 58940899 58942071 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081175.1 MGP_C57BL6NJ_G0031874.1 mouse_genomes_project 6 145213097 145216486 - MGP_C57BL6NJ_P0081175 Mgp protein_coding protein_coding MGP_C57BL6NJ_T0081176.1 MGP_C57BL6NJ_G0031874.1 mouse_genomes_project 6 145214359 145216444 - Mgp protein_coding retained_intron MGP_C57BL6NJ_T0079143.1 MGP_C57BL6NJ_G0031432.1 mouse_genomes_project 6 91476280 91479413 + Efcc1 protein_coding retained_intron MGP_C57BL6NJ_T0079144.1 MGP_C57BL6NJ_G0031432.1 mouse_genomes_project 6 91476280 91503652 + MGP_C57BL6NJ_P0079144 Efcc1 protein_coding protein_coding MGP_C57BL6NJ_T0079145.1 MGP_C57BL6NJ_G0031432.1 mouse_genomes_project 6 91476304 91509112 + MGP_C57BL6NJ_P0079145 Efcc1 protein_coding protein_coding MGP_C57BL6NJ_T0079146.1 MGP_C57BL6NJ_G0031432.1 mouse_genomes_project 6 91478220 91497273 + Efcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0079147.1 MGP_C57BL6NJ_G0031432.1 mouse_genomes_project 6 91501722 91502963 + Efcc1 protein_coding retained_intron MGP_C57BL6NJ_T0077771.1 MGP_C57BL6NJ_G0031116.1 mouse_genomes_project 6 44862258 47303646 + MGP_C57BL6NJ_P0077771 Cntnap2 protein_coding protein_coding MGP_C57BL6NJ_T0077772.1 MGP_C57BL6NJ_G0031116.1 mouse_genomes_project 6 46043151 46329504 + Cntnap2 protein_coding processed_transcript MGP_C57BL6NJ_T0077773.1 MGP_C57BL6NJ_G0031116.1 mouse_genomes_project 6 46975409 47027070 + MGP_C57BL6NJ_P0077773 Cntnap2 protein_coding protein_coding MGP_C57BL6NJ_T0077775.1 MGP_C57BL6NJ_G0031116.1 mouse_genomes_project 6 47177238 47298030 + MGP_C57BL6NJ_P0077775 Cntnap2 protein_coding protein_coding MGP_C57BL6NJ_T0077632.1 MGP_C57BL6NJ_G0031058.1 mouse_genomes_project 6 40429815 40433605 + MGP_C57BL6NJ_P0077632 1810009J06Rik protein_coding protein_coding MGP_C57BL6NJ_T0101792.1 MGP_C57BL6NJ_G0039838.1 mouse_genomes_project 6 54387622 54387754 - Gm22910 snoRNA snoRNA MGP_C57BL6NJ_T0101822.1 MGP_C57BL6NJ_G0039868.1 mouse_genomes_project 6 122111174 122111278 - Gm23527 snoRNA snoRNA MGP_C57BL6NJ_T0008710.1 MGP_C57BL6NJ_G0007051.1 mouse_genomes_project 6 28986373 29013996 + 1700095J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008711.1 MGP_C57BL6NJ_G0007051.1 mouse_genomes_project 6 28986389 28989537 + 1700095J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0078048.1 MGP_C57BL6NJ_G0031183.1 mouse_genomes_project 6 52600578 52604842 - MGP_C57BL6NJ_P0078048 Hoxa9 protein_coding protein_coding MGP_C57BL6NJ_T0078049.1 MGP_C57BL6NJ_G0031183.1 mouse_genomes_project 6 52601441 52608558 - Hoxa9 protein_coding processed_transcript MGP_C57BL6NJ_T0078050.1 MGP_C57BL6NJ_G0031183.1 mouse_genomes_project 6 52601599 52603661 - MGP_C57BL6NJ_P0078050 Hoxa9 protein_coding protein_coding MGP_C57BL6NJ_T0078051.1 MGP_C57BL6NJ_G0031183.1 mouse_genomes_project 6 52601801 52607751 - Hoxa9 protein_coding processed_transcript MGP_C57BL6NJ_T0078052.1 MGP_C57BL6NJ_G0031183.1 mouse_genomes_project 6 52605718 52608001 - Hoxa9 protein_coding retained_intron MGP_C57BL6NJ_T0077020.1 MGP_C57BL6NJ_G0030940.1 mouse_genomes_project 6 23967550 23991402 - MGP_C57BL6NJ_P0077020 Gpr37 protein_coding protein_coding MGP_C57BL6NJ_T0077021.1 MGP_C57BL6NJ_G0030940.1 mouse_genomes_project 6 23969080 23992339 - MGP_C57BL6NJ_P0077021 Gpr37 protein_coding protein_coding MGP_C57BL6NJ_T0076862.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002095 15036481 + MGP_C57BL6NJ_P0076862 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076863.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002105 15035586 + MGP_C57BL6NJ_P0076863 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076864.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002170 15034453 + MGP_C57BL6NJ_P0076864 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076865.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002171 15024272 + Cav1 protein_coding processed_transcript MGP_C57BL6NJ_T0076866.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002171 15034508 + MGP_C57BL6NJ_P0076866 Cav1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076867.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002183 15003950 + MGP_C57BL6NJ_P0076867 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076868.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15002794 15034310 + MGP_C57BL6NJ_P0076868 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076869.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15003024 15034676 + MGP_C57BL6NJ_P0076869 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076870.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15003386 15036609 + MGP_C57BL6NJ_P0076870 Cav1 protein_coding protein_coding MGP_C57BL6NJ_T0076871.1 MGP_C57BL6NJ_G0030906.1 mouse_genomes_project 6 15003469 15024263 + Cav1 protein_coding processed_transcript MGP_C57BL6NJ_T0077242.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29239579 29266849 + MGP_C57BL6NJ_P0077242 Cpa2 protein_coding protein_coding MGP_C57BL6NJ_T0077243.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29239639 29242470 + Cpa2 protein_coding retained_intron MGP_C57BL6NJ_T0077244.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29239667 29245108 + Cpa2 protein_coding processed_transcript MGP_C57BL6NJ_T0077245.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29241205 29242990 + Cpa2 protein_coding retained_intron MGP_C57BL6NJ_T0077246.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29241913 29251419 + Cpa2 protein_coding retained_intron MGP_C57BL6NJ_T0077247.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29242482 29248656 + Cpa2 protein_coding retained_intron MGP_C57BL6NJ_T0077248.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29244639 29245153 + Cpa2 protein_coding processed_transcript MGP_C57BL6NJ_T0077249.1 MGP_C57BL6NJ_G0030976.1 mouse_genomes_project 6 29251265 29266621 + Cpa2 protein_coding retained_intron MGP_C57BL6NJ_T0076823.1 MGP_C57BL6NJ_G0030900.1 mouse_genomes_project 6 12270835 12313529 - MGP_C57BL6NJ_P0076823 Ppp1r3a protein_coding protein_coding MGP_C57BL6NJ_T0076673.1 MGP_C57BL6NJ_G0030867.1 mouse_genomes_project 6 1586708 1601398 + MGP_C57BL6NJ_P0076673 protein_coding protein_coding MGP_C57BL6NJ_T0076674.1 MGP_C57BL6NJ_G0030867.1 mouse_genomes_project 6 1586708 1601400 + MGP_C57BL6NJ_P0076674 protein_coding protein_coding MGP_C57BL6NJ_T0076675.1 MGP_C57BL6NJ_G0030867.1 mouse_genomes_project 6 1586808 1601400 + MGP_C57BL6NJ_P0076675 protein_coding protein_coding MGP_C57BL6NJ_T0078559.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74900062 74908770 - MGP_C57BL6NJ_P0078559 Mat2a protein_coding protein_coding MGP_C57BL6NJ_T0078560.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74900062 74908772 - MGP_C57BL6NJ_P0078560 Mat2a protein_coding protein_coding MGP_C57BL6NJ_T0078561.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74900063 74904205 - MGP_C57BL6NJ_P0078561 Mat2a protein_coding protein_coding MGP_C57BL6NJ_T0078562.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74901163 74904290 - MGP_C57BL6NJ_P0078562 Mat2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078563.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74903758 74908770 - MGP_C57BL6NJ_P0078563 Mat2a protein_coding protein_coding MGP_C57BL6NJ_T0078564.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74905024 74908602 - MGP_C57BL6NJ_P0078564 Mat2a protein_coding protein_coding MGP_C57BL6NJ_T0078565.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74905630 74908754 - Mat2a protein_coding retained_intron MGP_C57BL6NJ_T0078566.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74905961 74908757 - Mat2a protein_coding retained_intron MGP_C57BL6NJ_T0078567.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74906613 74908762 - Mat2a protein_coding processed_transcript MGP_C57BL6NJ_T0078568.1 MGP_C57BL6NJ_G0031316.1 mouse_genomes_project 6 74908015 74908770 - Mat2a protein_coding retained_intron MGP_C57BL6NJ_T0011056.1 MGP_C57BL6NJ_G0009141.1 mouse_genomes_project 6 123938923 123938995 + Mir7044 miRNA miRNA MGP_C57BL6NJ_T0008705.1 MGP_C57BL6NJ_G0007048.1 mouse_genomes_project 6 24242783 24296577 + Gm20756 lincRNA lincRNA MGP_C57BL6NJ_T0008706.1 MGP_C57BL6NJ_G0007048.1 mouse_genomes_project 6 24273985 24277707 + Gm20756 lincRNA lincRNA MGP_C57BL6NJ_T0103252.1 MGP_C57BL6NJ_G0041046.1 mouse_genomes_project 6 58840173 58840307 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078225.1 MGP_C57BL6NJ_G0031221.1 mouse_genomes_project 6 57729319 57730375 + MGP_C57BL6NJ_P0078225 Vmn1r5 protein_coding protein_coding MGP_C57BL6NJ_T0008704.1 MGP_C57BL6NJ_G0007047.1 mouse_genomes_project 6 20049634 20137372 - Gm26719 lincRNA lincRNA MGP_C57BL6NJ_T0016072.1 MGP_C57BL6NJ_G0014117.1 mouse_genomes_project 6 142907311 142907720 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079459.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96234292 96263931 - MGP_C57BL6NJ_P0079459 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079460.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96237383 96248251 - MGP_C57BL6NJ_P0079460 protein_coding protein_coding MGP_C57BL6NJ_T0079461.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96237925 96250154 - protein_coding processed_transcript MGP_C57BL6NJ_T0079462.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96238288 96241671 - protein_coding retained_intron MGP_C57BL6NJ_T0079463.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96255678 96264202 - MGP_C57BL6NJ_P0079463 protein_coding protein_coding MGP_C57BL6NJ_T0079464.1 MGP_C57BL6NJ_G0031496.1 mouse_genomes_project 6 96260074 96263922 - MGP_C57BL6NJ_P0079464 protein_coding protein_coding MGP_C57BL6NJ_T0005107.1 MGP_C57BL6NJ_G0004378.1 mouse_genomes_project 6 42896173 42897487 - Gm44731 antisense antisense MGP_C57BL6NJ_T0078057.1 MGP_C57BL6NJ_G0031185.1 mouse_genomes_project 6 52619574 52623277 - MGP_C57BL6NJ_P0078057 Hoxa11 protein_coding protein_coding MGP_C57BL6NJ_T0078058.1 MGP_C57BL6NJ_G0031185.1 mouse_genomes_project 6 52619578 52623262 - Hoxa11 protein_coding processed_transcript MGP_C57BL6NJ_T0008693.1 MGP_C57BL6NJ_G0007039.1 mouse_genomes_project 6 11360413 11551373 + lincRNA lincRNA MGP_C57BL6NJ_T0008694.1 MGP_C57BL6NJ_G0007039.1 mouse_genomes_project 6 11360456 11387414 + lincRNA lincRNA MGP_C57BL6NJ_T0000220.1 MGP_C57BL6NJ_G0000164.1 mouse_genomes_project 6 70292107 70292605 + MGP_C57BL6NJ_P0000220 Igkv16-104 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000269.1 MGP_C57BL6NJ_G0000201.1 mouse_genomes_project 6 72129878 72130603 - MGP_C57BL6NJ_P0000269 Igkv1-35 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000270.1 MGP_C57BL6NJ_G0000201.1 mouse_genomes_project 6 72129878 72130603 - MGP_C57BL6NJ_P0000270 Igkv1-35 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002227.1 MGP_C57BL6NJ_G0002118.1 mouse_genomes_project 6 96053066 96054997 + TEC TEC MGP_C57BL6NJ_T0002701.1 MGP_C57BL6NJ_G0002581.1 mouse_genomes_project 6 41055571 41055619 + MGP_C57BL6NJ_P0002701 Trbj1-1 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0011004.1 MGP_C57BL6NJ_G0009089.1 mouse_genomes_project 6 27975335 27975478 - Gm44354 miRNA miRNA MGP_C57BL6NJ_T0002116.1 MGP_C57BL6NJ_G0002007.1 mouse_genomes_project 6 46010409 46014778 + TEC TEC MGP_C57BL6NJ_T0002264.1 MGP_C57BL6NJ_G0002155.1 mouse_genomes_project 6 121602581 121603420 - TEC TEC MGP_C57BL6NJ_T0077531.1 MGP_C57BL6NJ_G0031031.1 mouse_genomes_project 6 38413501 38488047 - MGP_C57BL6NJ_P0077531 Kdm7a protein_coding protein_coding MGP_C57BL6NJ_T0077532.1 MGP_C57BL6NJ_G0031031.1 mouse_genomes_project 6 38419711 38432224 - Kdm7a protein_coding processed_transcript MGP_C57BL6NJ_T0081323.1 MGP_C57BL6NJ_G0031901.1 mouse_genomes_project 6 150763864 150805381 - MGP_C57BL6NJ_P0081323 Gm6614 protein_coding protein_coding MGP_C57BL6NJ_T0081324.1 MGP_C57BL6NJ_G0031901.1 mouse_genomes_project 6 150763864 150805381 - MGP_C57BL6NJ_P0081324 Gm6614 protein_coding protein_coding MGP_C57BL6NJ_T0081325.1 MGP_C57BL6NJ_G0031901.1 mouse_genomes_project 6 150764215 150802712 - MGP_C57BL6NJ_P0081325 Gm6614 protein_coding protein_coding MGP_C57BL6NJ_T0080253.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126356613 126398223 - MGP_C57BL6NJ_P0080253 Ccdc77 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080254.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126356613 126391371 - MGP_C57BL6NJ_P0080254 Ccdc77 protein_coding protein_coding MGP_C57BL6NJ_T0080255.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126357325 126391414 - MGP_C57BL6NJ_P0080255 Ccdc77 protein_coding protein_coding MGP_C57BL6NJ_T0080256.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126364764 126391352 - MGP_C57BL6NJ_P0080256 Ccdc77 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080257.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126367731 126391309 - MGP_C57BL6NJ_P0080257 Ccdc77 protein_coding protein_coding MGP_C57BL6NJ_T0080258.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126367764 126391282 - MGP_C57BL6NJ_P0080258 Ccdc77 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080259.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126370725 126391319 - Ccdc77 protein_coding retained_intron MGP_C57BL6NJ_T0080260.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126378254 126383134 - Ccdc77 protein_coding retained_intron MGP_C57BL6NJ_T0080261.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126382951 126398205 - MGP_C57BL6NJ_P0080261 Ccdc77 protein_coding protein_coding MGP_C57BL6NJ_T0080262.1 MGP_C57BL6NJ_G0031640.1 mouse_genomes_project 6 126386096 126391309 - Ccdc77 protein_coding retained_intron MGP_C57BL6NJ_T0005090.1 MGP_C57BL6NJ_G0004364.1 mouse_genomes_project 6 33172922 33207341 + Gm14546 antisense antisense MGP_C57BL6NJ_T0080299.1 MGP_C57BL6NJ_G0031649.1 mouse_genomes_project 6 126982052 127008950 - MGP_C57BL6NJ_P0080299 Bid protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080300.1 MGP_C57BL6NJ_G0031649.1 mouse_genomes_project 6 126982976 127008967 - MGP_C57BL6NJ_P0080300 Bid protein_coding protein_coding MGP_C57BL6NJ_T0080301.1 MGP_C57BL6NJ_G0031649.1 mouse_genomes_project 6 126985740 126987691 - Bid protein_coding retained_intron MGP_C57BL6NJ_T0080302.1 MGP_C57BL6NJ_G0031649.1 mouse_genomes_project 6 126990344 127008912 - MGP_C57BL6NJ_P0080302 Bid protein_coding protein_coding MGP_C57BL6NJ_T0080303.1 MGP_C57BL6NJ_G0031649.1 mouse_genomes_project 6 126997120 127008917 - Bid protein_coding processed_transcript MGP_C57BL6NJ_T0002202.1 MGP_C57BL6NJ_G0002093.1 mouse_genomes_project 6 91589760 91592353 - TEC TEC MGP_C57BL6NJ_T0080330.1 MGP_C57BL6NJ_G0031654.1 mouse_genomes_project 6 127417229 127454795 + MGP_C57BL6NJ_P0080330 Slc6a13 protein_coding protein_coding MGP_C57BL6NJ_T0080331.1 MGP_C57BL6NJ_G0031654.1 mouse_genomes_project 6 127417291 127450653 + Slc6a13 protein_coding retained_intron MGP_C57BL6NJ_T0080332.1 MGP_C57BL6NJ_G0031654.1 mouse_genomes_project 6 127417291 127420296 + Slc6a13 protein_coding retained_intron MGP_C57BL6NJ_T0080333.1 MGP_C57BL6NJ_G0031654.1 mouse_genomes_project 6 127417784 127441392 + MGP_C57BL6NJ_P0080333 Slc6a13 protein_coding protein_coding MGP_C57BL6NJ_T0077278.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29476970 29619112 - MGP_C57BL6NJ_P0077278 Copg2 protein_coding protein_coding MGP_C57BL6NJ_T0077279.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29477828 29619167 - MGP_C57BL6NJ_P0077279 Copg2 protein_coding protein_coding MGP_C57BL6NJ_T0077280.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29539055 29619083 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0077281.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29539545 29619137 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0077282.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29577371 29619103 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0077283.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29577747 29618812 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0077284.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29617282 29618823 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0077285.1 MGP_C57BL6NJ_G0030982.1 mouse_genomes_project 6 29618500 29619121 - Copg2 protein_coding processed_transcript MGP_C57BL6NJ_T0008819.1 MGP_C57BL6NJ_G0007131.1 mouse_genomes_project 6 84841460 84888946 - Gm43902 lincRNA lincRNA MGP_C57BL6NJ_T0008958.1 MGP_C57BL6NJ_G0007236.1 mouse_genomes_project 6 156283898 156312251 + E330012B07Rik lincRNA lincRNA MGP_C57BL6NJ_T0008959.1 MGP_C57BL6NJ_G0007236.1 mouse_genomes_project 6 156283916 156306750 + E330012B07Rik lincRNA lincRNA MGP_C57BL6NJ_T0079327.1 MGP_C57BL6NJ_G0031468.1 mouse_genomes_project 6 94038287 94046635 + MGP_C57BL6NJ_P0079327 Vmn1r51 protein_coding protein_coding MGP_C57BL6NJ_T0079328.1 MGP_C57BL6NJ_G0031468.1 mouse_genomes_project 6 94044068 94046635 + MGP_C57BL6NJ_P0079328 Vmn1r51 protein_coding protein_coding MGP_C57BL6NJ_T0077547.1 MGP_C57BL6NJ_G0031033.1 mouse_genomes_project 6 38684374 38693500 + MGP_C57BL6NJ_P0077547 Rab19 protein_coding protein_coding MGP_C57BL6NJ_T0081174.1 MGP_C57BL6NJ_G0031873.1 mouse_genomes_project 6 145190058 145199056 - MGP_C57BL6NJ_P0081174 Art4 protein_coding protein_coding MGP_C57BL6NJ_T0076728.1 MGP_C57BL6NJ_G0030879.1 mouse_genomes_project 6 3972817 4066827 + MGP_C57BL6NJ_P0076728 Sdhaf3 protein_coding protein_coding MGP_C57BL6NJ_T0076729.1 MGP_C57BL6NJ_G0030879.1 mouse_genomes_project 6 3972820 3984994 + Sdhaf3 protein_coding processed_transcript MGP_C57BL6NJ_T0080710.1 MGP_C57BL6NJ_G0031730.1 mouse_genomes_project 6 132069852 132079621 + MGP_C57BL6NJ_P0080710 Scnn1a protein_coding protein_coding MGP_C57BL6NJ_T0080711.1 MGP_C57BL6NJ_G0031730.1 mouse_genomes_project 6 132069926 132094171 + MGP_C57BL6NJ_P0080711 Scnn1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080712.1 MGP_C57BL6NJ_G0031730.1 mouse_genomes_project 6 132070168 132094394 + MGP_C57BL6NJ_P0080712 Scnn1a protein_coding protein_coding MGP_C57BL6NJ_T0080713.1 MGP_C57BL6NJ_G0031730.1 mouse_genomes_project 6 132070528 132093870 + MGP_C57BL6NJ_P0080713 Scnn1a protein_coding protein_coding MGP_C57BL6NJ_T0015706.1 MGP_C57BL6NJ_G0013751.1 mouse_genomes_project 6 35687780 35688209 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016053.1 MGP_C57BL6NJ_G0014098.1 mouse_genomes_project 6 139498346 139498556 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079703.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118082795 118154715 - MGP_C57BL6NJ_P0079703 Rad18 protein_coding protein_coding MGP_C57BL6NJ_T0079704.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118082890 118154633 - MGP_C57BL6NJ_P0079704 Rad18 protein_coding protein_coding MGP_C57BL6NJ_T0079705.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118082918 118154640 - MGP_C57BL6NJ_P0079705 Rad18 protein_coding protein_coding MGP_C57BL6NJ_T0079706.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118082920 118154699 - MGP_C57BL6NJ_P0079706 Rad18 protein_coding protein_coding MGP_C57BL6NJ_T0079707.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118083776 118134073 - MGP_C57BL6NJ_P0079707 Rad18 protein_coding protein_coding MGP_C57BL6NJ_T0079708.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118089352 118154677 - Rad18 protein_coding processed_transcript MGP_C57BL6NJ_T0079709.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118108775 118154662 - MGP_C57BL6NJ_P0079709 Rad18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079710.1 MGP_C57BL6NJ_G0031548.1 mouse_genomes_project 6 118121819 118154673 - Rad18 protein_coding retained_intron MGP_C57BL6NJ_T0002301.1 MGP_C57BL6NJ_G0002191.1 mouse_genomes_project 6 143456318 143456574 - TEC TEC MGP_C57BL6NJ_T0011044.1 MGP_C57BL6NJ_G0009129.1 mouse_genomes_project 6 103989520 103989632 - Gm22328 miRNA miRNA MGP_C57BL6NJ_T0008736.1 MGP_C57BL6NJ_G0007068.1 mouse_genomes_project 6 31549776 31550436 - BC049739 lincRNA lincRNA MGP_C57BL6NJ_T0078575.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75022570 75045444 + MGP_C57BL6NJ_P0078575 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078576.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75022716 75045442 + MGP_C57BL6NJ_P0078576 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078577.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75023972 75038719 + MGP_C57BL6NJ_P0078577 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078578.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75029199 75040237 + MGP_C57BL6NJ_P0078578 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078579.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75030532 75045444 + MGP_C57BL6NJ_P0078579 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078580.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75030691 75040208 + Capg protein_coding retained_intron MGP_C57BL6NJ_T0078581.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75030710 75038333 + MGP_C57BL6NJ_P0078581 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078582.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75030717 75038102 + Capg protein_coding retained_intron MGP_C57BL6NJ_T0078583.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75030911 75038291 + MGP_C57BL6NJ_P0078583 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078584.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75035404 75040724 + MGP_C57BL6NJ_P0078584 Capg protein_coding protein_coding MGP_C57BL6NJ_T0078585.1 MGP_C57BL6NJ_G0031318.1 mouse_genomes_project 6 75038445 75040314 + Capg protein_coding retained_intron MGP_C57BL6NJ_T0079319.1 MGP_C57BL6NJ_G0031463.1 mouse_genomes_project 6 93878046 93885830 + MGP_C57BL6NJ_P0079319 Vmn1r46 protein_coding protein_coding MGP_C57BL6NJ_T0079320.1 MGP_C57BL6NJ_G0031463.1 mouse_genomes_project 6 93884873 93885803 + MGP_C57BL6NJ_P0079320 Vmn1r46 protein_coding protein_coding MGP_C57BL6NJ_T0077598.1 MGP_C57BL6NJ_G0031044.1 mouse_genomes_project 6 39863959 39879450 + MGP_C57BL6NJ_P0077598 Wee2 protein_coding protein_coding MGP_C57BL6NJ_T0077599.1 MGP_C57BL6NJ_G0031044.1 mouse_genomes_project 6 39867721 39891121 + MGP_C57BL6NJ_P0077599 Wee2 protein_coding protein_coding MGP_C57BL6NJ_T0077600.1 MGP_C57BL6NJ_G0031044.1 mouse_genomes_project 6 39867795 39869013 + MGP_C57BL6NJ_P0077600 Wee2 protein_coding protein_coding MGP_C57BL6NJ_T0008794.1 MGP_C57BL6NJ_G0007108.1 mouse_genomes_project 6 61040908 61168381 + lincRNA lincRNA MGP_C57BL6NJ_T0008795.1 MGP_C57BL6NJ_G0007108.1 mouse_genomes_project 6 61099581 61107164 + lincRNA lincRNA MGP_C57BL6NJ_T0005213.1 MGP_C57BL6NJ_G0004444.1 mouse_genomes_project 6 113695689 113702348 - Gm44040 antisense antisense MGP_C57BL6NJ_T0078773.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86442522 86449532 - MGP_C57BL6NJ_P0078773 Wdr54 protein_coding protein_coding MGP_C57BL6NJ_T0078775.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86445871 86449355 - Wdr54 protein_coding retained_intron MGP_C57BL6NJ_T0078776.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86445875 86449500 - Wdr54 protein_coding retained_intron MGP_C57BL6NJ_T0078777.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86446447 86449400 - Wdr54 protein_coding processed_transcript MGP_C57BL6NJ_T0078778.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86447689 86449532 - MGP_C57BL6NJ_P0078778 Wdr54 protein_coding protein_coding MGP_C57BL6NJ_T0078779.1 MGP_C57BL6NJ_G0031363.1 mouse_genomes_project 6 86448347 86449514 - Wdr54 protein_coding processed_transcript MGP_C57BL6NJ_T0015749.1 MGP_C57BL6NJ_G0013794.1 mouse_genomes_project 6 49188936 49189243 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078663.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85132643 85168811 + MGP_C57BL6NJ_P0078663 Gcfc2 protein_coding protein_coding MGP_C57BL6NJ_T0078664.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85132647 85168152 + MGP_C57BL6NJ_P0078664 Gcfc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078665.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85132654 85153194 + Gcfc2 protein_coding retained_intron MGP_C57BL6NJ_T0078666.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85139689 85140142 + Gcfc2 protein_coding retained_intron MGP_C57BL6NJ_T0078667.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85141843 85143271 + Gcfc2 protein_coding retained_intron MGP_C57BL6NJ_T0078668.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85150328 85152699 + Gcfc2 protein_coding retained_intron MGP_C57BL6NJ_T0078669.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85155477 85166958 + MGP_C57BL6NJ_P0078669 Gcfc2 protein_coding protein_coding MGP_C57BL6NJ_T0078670.1 MGP_C57BL6NJ_G0031340.1 mouse_genomes_project 6 85158656 85165860 + Gcfc2 protein_coding retained_intron MGP_C57BL6NJ_T0000264.1 MGP_C57BL6NJ_G0000198.1 mouse_genomes_project 6 72059997 72060460 - MGP_C57BL6NJ_P0000264 Igkv12-38 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000265.1 MGP_C57BL6NJ_G0000198.1 mouse_genomes_project 6 72059997 72060460 - MGP_C57BL6NJ_P0000265 Igkv12-38 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0102523.1 MGP_C57BL6NJ_G0040377.1 mouse_genomes_project 6 128242879 128266684 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0005223.1 MGP_C57BL6NJ_G0004449.1 mouse_genomes_project 6 118782823 118783917 - Gm16161 antisense antisense MGP_C57BL6NJ_T0078416.1 MGP_C57BL6NJ_G0031287.1 mouse_genomes_project 6 73066960 73098290 - MGP_C57BL6NJ_P0078416 Rpia protein_coding protein_coding MGP_C57BL6NJ_T0078417.1 MGP_C57BL6NJ_G0031287.1 mouse_genomes_project 6 73067513 73077599 - Rpia protein_coding retained_intron MGP_C57BL6NJ_T0078418.1 MGP_C57BL6NJ_G0031287.1 mouse_genomes_project 6 73085501 73098061 - Rpia protein_coding retained_intron MGP_C57BL6NJ_T0005216.1 MGP_C57BL6NJ_G0004446.1 mouse_genomes_project 6 115982846 115989010 - Gm20387 antisense antisense MGP_C57BL6NJ_T0078984.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89525288 89530903 + Tprkb protein_coding processed_transcript MGP_C57BL6NJ_T0078985.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89525300 89542198 + MGP_C57BL6NJ_P0078985 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078986.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89525314 89531289 + Tprkb protein_coding processed_transcript MGP_C57BL6NJ_T0078987.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89525330 89537642 + Tprkb protein_coding processed_transcript MGP_C57BL6NJ_T0078988.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89529759 89531651 + Tprkb protein_coding retained_intron MGP_C57BL6NJ_T0078989.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531396 89540873 + MGP_C57BL6NJ_P0078989 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078990.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531415 89543549 + MGP_C57BL6NJ_P0078990 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078991.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531415 89541360 + MGP_C57BL6NJ_P0078991 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078992.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531424 89543547 + MGP_C57BL6NJ_P0078992 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078993.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531424 89541785 + MGP_C57BL6NJ_P0078993 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078994.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531432 89542290 + MGP_C57BL6NJ_P0078994 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078995.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531433 89537881 + Tprkb protein_coding processed_transcript MGP_C57BL6NJ_T0078996.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531434 89541156 + MGP_C57BL6NJ_P0078996 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0078997.1 MGP_C57BL6NJ_G0031403.1 mouse_genomes_project 6 89531475 89541205 + MGP_C57BL6NJ_P0078997 Tprkb protein_coding protein_coding MGP_C57BL6NJ_T0000199.1 MGP_C57BL6NJ_G0000148.1 mouse_genomes_project 6 69245309 69245622 + MGP_C57BL6NJ_P0000199 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002233.1 MGP_C57BL6NJ_G0002124.1 mouse_genomes_project 6 101482346 101485873 + TEC TEC MGP_C57BL6NJ_T0080295.1 MGP_C57BL6NJ_G0031648.1 mouse_genomes_project 6 126922529 126955230 + Bcl2l13 protein_coding retained_intron MGP_C57BL6NJ_T0080296.1 MGP_C57BL6NJ_G0031648.1 mouse_genomes_project 6 126922529 126952977 + MGP_C57BL6NJ_P0080296 Bcl2l13 protein_coding protein_coding MGP_C57BL6NJ_T0080297.1 MGP_C57BL6NJ_G0031648.1 mouse_genomes_project 6 126922543 126963713 + MGP_C57BL6NJ_P0080297 Bcl2l13 protein_coding protein_coding MGP_C57BL6NJ_T0080298.1 MGP_C57BL6NJ_G0031648.1 mouse_genomes_project 6 126922555 126982965 + MGP_C57BL6NJ_P0080298 Bcl2l13 protein_coding protein_coding MGP_C57BL6NJ_T0103233.1 MGP_C57BL6NJ_G0041027.1 mouse_genomes_project 6 37783409 37786944 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015681.1 MGP_C57BL6NJ_G0013726.1 mouse_genomes_project 6 21323757 21339986 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015630.1 MGP_C57BL6NJ_G0013675.1 mouse_genomes_project 6 3285941 3286174 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011045.1 MGP_C57BL6NJ_G0009130.1 mouse_genomes_project 6 107535865 107535967 + Mir6373 miRNA miRNA MGP_C57BL6NJ_T0103278.1 MGP_C57BL6NJ_G0041072.1 mouse_genomes_project 6 93974263 93974435 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079696.1 MGP_C57BL6NJ_G0031544.1 mouse_genomes_project 6 117737253 117794157 + MGP_C57BL6NJ_P0079696 Lmcd1 protein_coding protein_coding MGP_C57BL6NJ_T0077578.1 MGP_C57BL6NJ_G0031040.1 mouse_genomes_project 6 39177451 39188655 - MGP_C57BL6NJ_P0077578 Mrps33 protein_coding protein_coding MGP_C57BL6NJ_T0077579.1 MGP_C57BL6NJ_G0031040.1 mouse_genomes_project 6 39177839 39188552 - MGP_C57BL6NJ_P0077579 Mrps33 protein_coding protein_coding MGP_C57BL6NJ_T0077580.1 MGP_C57BL6NJ_G0031040.1 mouse_genomes_project 6 39178031 39183576 - MGP_C57BL6NJ_P0077580 Mrps33 protein_coding protein_coding MGP_C57BL6NJ_T0077581.1 MGP_C57BL6NJ_G0031040.1 mouse_genomes_project 6 39182775 39188560 - Mrps33 protein_coding retained_intron MGP_C57BL6NJ_T0015778.1 MGP_C57BL6NJ_G0013823.1 mouse_genomes_project 6 59696496 59696742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101785.1 MGP_C57BL6NJ_G0039831.1 mouse_genomes_project 6 38735728 38735859 - Gm25402 snoRNA snoRNA MGP_C57BL6NJ_T0008954.1 MGP_C57BL6NJ_G0007232.1 mouse_genomes_project 6 154345379 154351980 + 2010013B24Rik lincRNA lincRNA MGP_C57BL6NJ_T0100518.1 MGP_C57BL6NJ_G0038564.1 mouse_genomes_project 6 38550392 38550491 - Gm26008 snRNA snRNA MGP_C57BL6NJ_T0015977.1 MGP_C57BL6NJ_G0014022.1 mouse_genomes_project 6 123839959 123840745 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002095.1 MGP_C57BL6NJ_G0001986.1 mouse_genomes_project 6 40359035 40360378 - TEC TEC MGP_C57BL6NJ_T0002125.1 MGP_C57BL6NJ_G0002016.1 mouse_genomes_project 6 52977305 52979988 + TEC TEC MGP_C57BL6NJ_T0015838.1 MGP_C57BL6NJ_G0013883.1 mouse_genomes_project 6 70103116 70103844 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015992.1 MGP_C57BL6NJ_G0014037.1 mouse_genomes_project 6 128656521 128656903 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016009.1 MGP_C57BL6NJ_G0014054.1 mouse_genomes_project 6 133812196 133813090 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078331.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455058 66469525 + MGP_C57BL6NJ_P0078331 Smarcad1 protein_coding protein_coding MGP_C57BL6NJ_T0078332.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455084 66531080 + MGP_C57BL6NJ_P0078332 Smarcad1 protein_coding protein_coding MGP_C57BL6NJ_T0078333.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455096 66456037 + Smarcad1 protein_coding retained_intron MGP_C57BL6NJ_T0078334.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455142 66456607 + MGP_C57BL6NJ_P0078334 Smarcad1 protein_coding protein_coding MGP_C57BL6NJ_T0078335.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455311 66456679 + MGP_C57BL6NJ_P0078335 Smarcad1 protein_coding protein_coding MGP_C57BL6NJ_T0078336.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455333 66465081 + MGP_C57BL6NJ_P0078336 Smarcad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078337.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455341 66465170 + MGP_C57BL6NJ_P0078337 Smarcad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078338.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455354 66496802 + Smarcad1 protein_coding processed_transcript MGP_C57BL6NJ_T0078339.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66455688 66530617 + MGP_C57BL6NJ_P0078339 Smarcad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078340.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66465203 66482672 + Smarcad1 protein_coding retained_intron MGP_C57BL6NJ_T0078341.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66472850 66490126 + Smarcad1 protein_coding processed_transcript MGP_C57BL6NJ_T0078342.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66490291 66510809 + MGP_C57BL6NJ_P0078342 Smarcad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078343.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66492616 66495678 + Smarcad1 protein_coding retained_intron MGP_C57BL6NJ_T0078344.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66516654 66517297 + Smarcad1 protein_coding retained_intron MGP_C57BL6NJ_T0078345.1 MGP_C57BL6NJ_G0031265.1 mouse_genomes_project 6 66522471 66524997 + Smarcad1 protein_coding retained_intron MGP_C57BL6NJ_T0078780.1 MGP_C57BL6NJ_G0031364.1 mouse_genomes_project 6 86449538 86457225 + MGP_C57BL6NJ_P0078780 1700003E16Rik protein_coding protein_coding MGP_C57BL6NJ_T0078781.1 MGP_C57BL6NJ_G0031364.1 mouse_genomes_project 6 86449635 86457171 + MGP_C57BL6NJ_P0078781 1700003E16Rik protein_coding protein_coding MGP_C57BL6NJ_T0018744.1 MGP_C57BL6NJ_G0016029.1 mouse_genomes_project 6 68458783 68459588 - 4930597O21Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018745.1 MGP_C57BL6NJ_G0016029.1 mouse_genomes_project 6 68458785 68460631 - 4930597O21Rik processed_transcript bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005284.1 MGP_C57BL6NJ_G0004503.1 mouse_genomes_project 6 153710518 153711861 + Sox5os5 antisense antisense MGP_C57BL6NJ_T0080892.1 MGP_C57BL6NJ_G0031774.1 mouse_genomes_project 6 136016387 136026881 + MGP_C57BL6NJ_P0080892 Clec2i protein_coding protein_coding MGP_C57BL6NJ_T0080893.1 MGP_C57BL6NJ_G0031774.1 mouse_genomes_project 6 136016387 136028185 + MGP_C57BL6NJ_P0080893 Clec2i protein_coding protein_coding MGP_C57BL6NJ_T0080894.1 MGP_C57BL6NJ_G0031774.1 mouse_genomes_project 6 136016388 136027915 + Clec2i protein_coding retained_intron MGP_C57BL6NJ_T0080895.1 MGP_C57BL6NJ_G0031774.1 mouse_genomes_project 6 136016397 136026881 + MGP_C57BL6NJ_P0080895 Clec2i protein_coding protein_coding MGP_C57BL6NJ_T0080896.1 MGP_C57BL6NJ_G0031774.1 mouse_genomes_project 6 136016397 136026881 + MGP_C57BL6NJ_P0080896 Clec2i protein_coding protein_coding MGP_C57BL6NJ_T0002279.1 MGP_C57BL6NJ_G0002169.1 mouse_genomes_project 6 131790562 131791155 + TEC TEC MGP_C57BL6NJ_T0080427.1 MGP_C57BL6NJ_G0031676.1 mouse_genomes_project 6 129445713 129485460 + MGP_C57BL6NJ_P0080427 Clec4a4 protein_coding protein_coding MGP_C57BL6NJ_T0000256.1 MGP_C57BL6NJ_G0000191.1 mouse_genomes_project 6 71818103 71818669 - MGP_C57BL6NJ_P0000256 Igkv5-48 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002822.1 MGP_C57BL6NJ_G0002685.1 mouse_genomes_project 6 40605828 40606299 + MGP_C57BL6NJ_P0002822 Trbv15 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0015633.1 MGP_C57BL6NJ_G0013678.1 mouse_genomes_project 6 3640770 3641494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005231.1 MGP_C57BL6NJ_G0004457.1 mouse_genomes_project 6 121503525 121509826 + antisense antisense MGP_C57BL6NJ_T0081534.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 155966458 156112822 + MGP_C57BL6NJ_P0081534 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081535.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 155966480 156052759 + MGP_C57BL6NJ_P0081535 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081536.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 155966560 156112822 + MGP_C57BL6NJ_P0081536 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081539.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156051187 156071303 + MGP_C57BL6NJ_P0081539 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081540.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156071347 156086764 + MGP_C57BL6NJ_P0081540 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081541.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156077253 156083046 + Ppfibp1 protein_coding processed_transcript MGP_C57BL6NJ_T0081542.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156080340 156112820 + Ppfibp1 protein_coding retained_intron MGP_C57BL6NJ_T0081543.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156081110 156098242 + Ppfibp1 protein_coding retained_intron MGP_C57BL6NJ_T0081544.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156082490 156086792 + Ppfibp1 protein_coding retained_intron MGP_C57BL6NJ_T0081545.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156083039 156099970 + MGP_C57BL6NJ_P0081545 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0081546.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156085904 156087122 + Ppfibp1 protein_coding retained_intron MGP_C57BL6NJ_T0081547.1 MGP_C57BL6NJ_G0031937.1 mouse_genomes_project 6 156091675 156100377 + MGP_C57BL6NJ_P0081547 Ppfibp1 protein_coding protein_coding MGP_C57BL6NJ_T0100562.1 MGP_C57BL6NJ_G0038608.1 mouse_genomes_project 6 144680488 144680573 + Gm25882 snRNA snRNA MGP_C57BL6NJ_T0081447.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246747 154251398 + MGP_C57BL6NJ_P0081447 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081448.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246769 154252546 + MGP_C57BL6NJ_P0081448 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081449.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246769 154252146 + MGP_C57BL6NJ_P0081449 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081450.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246783 154250575 + Lyrm5 protein_coding processed_transcript MGP_C57BL6NJ_T0081451.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246788 154252146 + MGP_C57BL6NJ_P0081451 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081452.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246788 154251378 + MGP_C57BL6NJ_P0081452 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081453.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246799 154252146 + MGP_C57BL6NJ_P0081453 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0081454.1 MGP_C57BL6NJ_G0031922.1 mouse_genomes_project 6 154246813 154251341 + MGP_C57BL6NJ_P0081454 Lyrm5 protein_coding protein_coding MGP_C57BL6NJ_T0078655.1 MGP_C57BL6NJ_G0031338.1 mouse_genomes_project 6 82848381 82848830 + MGP_C57BL6NJ_P0078655 Gm20594 protein_coding protein_coding MGP_C57BL6NJ_T0000233.1 MGP_C57BL6NJ_G0000173.1 mouse_genomes_project 6 70691306 70691862 - MGP_C57BL6NJ_P0000233 Igkv4-92 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0008739.1 MGP_C57BL6NJ_G0007071.1 mouse_genomes_project 6 33445510 33452802 + Gm13860 lincRNA lincRNA MGP_C57BL6NJ_T0078324.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 64519927 64581753 + Grid2 protein_coding processed_transcript MGP_C57BL6NJ_T0078325.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 64520057 65524524 + Grid2 protein_coding processed_transcript MGP_C57BL6NJ_T0078326.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 64520078 66041540 + MGP_C57BL6NJ_P0078326 Grid2 protein_coding protein_coding MGP_C57BL6NJ_T0078327.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 64520246 64787656 + Grid2 protein_coding retained_intron MGP_C57BL6NJ_T0078328.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 64520877 65628814 + Grid2 protein_coding retained_intron MGP_C57BL6NJ_T0078329.1 MGP_C57BL6NJ_G0031263.1 mouse_genomes_project 6 65417370 65436861 + Grid2 protein_coding retained_intron MGP_C57BL6NJ_T0002267.1 MGP_C57BL6NJ_G0002158.1 mouse_genomes_project 6 122390381 122393106 + TEC TEC MGP_C57BL6NJ_T0002262.1 MGP_C57BL6NJ_G0002153.1 mouse_genomes_project 6 119262210 119262905 + TEC TEC MGP_C57BL6NJ_T0016003.1 MGP_C57BL6NJ_G0014048.1 mouse_genomes_project 6 131656859 131657304 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018688.1 MGP_C57BL6NJ_G0016015.1 mouse_genomes_project 6 5584718 5607910 - A430035B10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018689.1 MGP_C57BL6NJ_G0016015.1 mouse_genomes_project 6 5585856 5593903 - A430035B10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018690.1 MGP_C57BL6NJ_G0016015.1 mouse_genomes_project 6 5586963 5605002 - A430035B10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018691.1 MGP_C57BL6NJ_G0016015.1 mouse_genomes_project 6 5588345 5604945 - A430035B10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018692.1 MGP_C57BL6NJ_G0016015.1 mouse_genomes_project 6 5602982 5605062 - A430035B10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0008868.1 MGP_C57BL6NJ_G0007166.1 mouse_genomes_project 6 104473698 104498629 - Gm44442 lincRNA lincRNA MGP_C57BL6NJ_T0008869.1 MGP_C57BL6NJ_G0007166.1 mouse_genomes_project 6 104473699 104478423 - Gm44442 lincRNA lincRNA MGP_C57BL6NJ_T0080326.1 MGP_C57BL6NJ_G0031653.1 mouse_genomes_project 6 127363331 127388255 + MGP_C57BL6NJ_P0080326 Usp18 protein_coding protein_coding MGP_C57BL6NJ_T0080327.1 MGP_C57BL6NJ_G0031653.1 mouse_genomes_project 6 127371196 127373157 + Usp18 protein_coding retained_intron MGP_C57BL6NJ_T0080328.1 MGP_C57BL6NJ_G0031653.1 mouse_genomes_project 6 127378777 127380546 + Usp18 protein_coding retained_intron MGP_C57BL6NJ_T0080329.1 MGP_C57BL6NJ_G0031653.1 mouse_genomes_project 6 127385917 127386833 + MGP_C57BL6NJ_P0080329 Usp18 protein_coding protein_coding MGP_C57BL6NJ_T0011067.1 MGP_C57BL6NJ_G0009152.1 mouse_genomes_project 6 134755829 134755889 - Mir7233 miRNA miRNA MGP_C57BL6NJ_T0077994.1 MGP_C57BL6NJ_G0031167.1 mouse_genomes_project 6 50807992 50831305 - MGP_C57BL6NJ_P0077994 4921507P07Rik protein_coding protein_coding MGP_C57BL6NJ_T0099132.1 MGP_C57BL6NJ_G0037196.1 mouse_genomes_project 6 29064472 29064586 + n-R5s161 rRNA rRNA MGP_C57BL6NJ_T0079848.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119056958 119127204 + MGP_C57BL6NJ_P0079848 Fancd2 protein_coding protein_coding MGP_C57BL6NJ_T0079849.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119056980 119063782 + Fancd2 protein_coding retained_intron MGP_C57BL6NJ_T0079850.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119056980 119064665 + Fancd2 protein_coding retained_intron MGP_C57BL6NJ_T0079851.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119056980 119126460 + MGP_C57BL6NJ_P0079851 Fancd2 protein_coding protein_coding MGP_C57BL6NJ_T0079852.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119079470 119081637 + Fancd2 protein_coding retained_intron MGP_C57BL6NJ_T0079853.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119079474 119091545 + MGP_C57BL6NJ_P0079853 Fancd2 protein_coding protein_coding MGP_C57BL6NJ_T0079854.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119097764 119103677 + MGP_C57BL6NJ_P0079854 Fancd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079855.1 MGP_C57BL6NJ_G0031569.1 mouse_genomes_project 6 119112326 119114899 + Fancd2 protein_coding retained_intron MGP_C57BL6NJ_T0015830.1 MGP_C57BL6NJ_G0013875.1 mouse_genomes_project 6 69270916 69271090 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015713.1 MGP_C57BL6NJ_G0013758.1 mouse_genomes_project 6 38996566 38997082 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103285.1 MGP_C57BL6NJ_G0041079.1 mouse_genomes_project 6 130698950 130699854 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000403.1 MGP_C57BL6NJ_G0000322.1 mouse_genomes_project 6 69885364 69885811 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011068.1 MGP_C57BL6NJ_G0009153.1 mouse_genomes_project 6 135089532 135089642 - Gm26338 miRNA miRNA MGP_C57BL6NJ_T0005189.1 MGP_C57BL6NJ_G0004429.1 mouse_genomes_project 6 92328353 92329026 + Gm44170 antisense antisense MGP_C57BL6NJ_T0008956.1 MGP_C57BL6NJ_G0007234.1 mouse_genomes_project 6 155092049 155094277 - Gm44269 lincRNA lincRNA MGP_C57BL6NJ_T0015776.1 MGP_C57BL6NJ_G0013821.1 mouse_genomes_project 6 59337509 59337673 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015943.1 MGP_C57BL6NJ_G0013988.1 mouse_genomes_project 6 114348540 114349018 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081027.1 MGP_C57BL6NJ_G0031832.1 mouse_genomes_project 6 140669165 140670083 + MGP_C57BL6NJ_P0081027 Tas2r116 protein_coding protein_coding MGP_C57BL6NJ_T0002325.1 MGP_C57BL6NJ_G0002215.1 mouse_genomes_project 6 156656826 156658335 - TEC TEC MGP_C57BL6NJ_T0080077.1 MGP_C57BL6NJ_G0031611.1 mouse_genomes_project 6 122336470 122337564 - MGP_C57BL6NJ_P0080077 Olfr215 protein_coding protein_coding MGP_C57BL6NJ_T0008759.1 MGP_C57BL6NJ_G0007080.1 mouse_genomes_project 6 43787403 43790263 - Gm35216 lincRNA lincRNA MGP_C57BL6NJ_T0080280.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126742889 126801686 + Cecr2 protein_coding retained_intron MGP_C57BL6NJ_T0080281.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126742941 126851240 + MGP_C57BL6NJ_P0080281 Cecr2 protein_coding protein_coding MGP_C57BL6NJ_T0080282.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126743126 126801514 + Cecr2 protein_coding processed_transcript MGP_C57BL6NJ_T0080283.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126743173 126846954 + MGP_C57BL6NJ_P0080283 Cecr2 protein_coding protein_coding MGP_C57BL6NJ_T0080284.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126812522 126834479 + Cecr2 protein_coding processed_transcript MGP_C57BL6NJ_T0080285.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126812589 126833353 + MGP_C57BL6NJ_P0080285 Cecr2 protein_coding protein_coding MGP_C57BL6NJ_T0080286.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126813720 126817672 + Cecr2 protein_coding retained_intron MGP_C57BL6NJ_T0080287.1 MGP_C57BL6NJ_G0031645.1 mouse_genomes_project 6 126835939 126839550 + MGP_C57BL6NJ_P0080287 Cecr2 protein_coding protein_coding MGP_C57BL6NJ_T0011884.1 MGP_C57BL6NJ_G0009969.1 mouse_genomes_project 6 5533304 5533616 + Gm24059 misc_RNA misc_RNA MGP_C57BL6NJ_T0081247.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146831665 147074060 - MGP_C57BL6NJ_P0081247 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081248.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146832943 146894883 - MGP_C57BL6NJ_P0081248 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081249.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146833709 146898005 - MGP_C57BL6NJ_P0081249 Lmo3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081250.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146834338 146896383 - MGP_C57BL6NJ_P0081250 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081251.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146834342 146896326 - MGP_C57BL6NJ_P0081251 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081252.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146834649 146900552 - MGP_C57BL6NJ_P0081252 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081253.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146847928 146896408 - MGP_C57BL6NJ_P0081253 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0081254.1 MGP_C57BL6NJ_G0031885.1 mouse_genomes_project 6 146888881 146900206 - MGP_C57BL6NJ_P0081254 Lmo3 protein_coding protein_coding MGP_C57BL6NJ_T0008848.1 MGP_C57BL6NJ_G0007151.1 mouse_genomes_project 6 93032444 93079457 - lincRNA lincRNA MGP_C57BL6NJ_T0015923.1 MGP_C57BL6NJ_G0013968.1 mouse_genomes_project 6 105361315 105361898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008955.1 MGP_C57BL6NJ_G0007233.1 mouse_genomes_project 6 154813565 154821184 - Gm15704 lincRNA lincRNA MGP_C57BL6NJ_T0015953.1 MGP_C57BL6NJ_G0013998.1 mouse_genomes_project 6 118457181 118457352 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079948.1 MGP_C57BL6NJ_G0031586.1 mouse_genomes_project 6 120854200 120864557 - MGP_C57BL6NJ_P0079948 Timp4 protein_coding protein_coding MGP_C57BL6NJ_T0079949.1 MGP_C57BL6NJ_G0031586.1 mouse_genomes_project 6 120859140 120864157 - MGP_C57BL6NJ_P0079949 Timp4 protein_coding protein_coding MGP_C57BL6NJ_T0078976.1 MGP_C57BL6NJ_G0031398.1 mouse_genomes_project 6 89411790 89415545 - MGP_C57BL6NJ_P0078976 Nat8f5 protein_coding protein_coding MGP_C57BL6NJ_T0076859.1 MGP_C57BL6NJ_G0030905.1 mouse_genomes_project 6 14975893 14984694 + MGP_C57BL6NJ_P0076859 Cav2 protein_coding protein_coding MGP_C57BL6NJ_T0076860.1 MGP_C57BL6NJ_G0030905.1 mouse_genomes_project 6 14976035 14977393 + MGP_C57BL6NJ_P0076860 Cav2 protein_coding protein_coding MGP_C57BL6NJ_T0076861.1 MGP_C57BL6NJ_G0030905.1 mouse_genomes_project 6 14976067 14982147 + MGP_C57BL6NJ_P0076861 Cav2 protein_coding protein_coding MGP_C57BL6NJ_T0103264.1 MGP_C57BL6NJ_G0041058.1 mouse_genomes_project 6 64196856 64197187 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101845.1 MGP_C57BL6NJ_G0039891.1 mouse_genomes_project 6 157810193 157810330 - Gm23456 snoRNA snoRNA MGP_C57BL6NJ_T0079994.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520810 121593591 + MGP_C57BL6NJ_P0079994 Ift122 protein_coding protein_coding MGP_C57BL6NJ_T0079995.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520870 121593582 + MGP_C57BL6NJ_P0079995 Ift122 protein_coding protein_coding MGP_C57BL6NJ_T0079996.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520920 121593585 + MGP_C57BL6NJ_P0079996 Ift122 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079997.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520928 121523419 + Ift122 protein_coding retained_intron MGP_C57BL6NJ_T0079998.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520975 121593222 + MGP_C57BL6NJ_P0079998 Ift122 protein_coding protein_coding MGP_C57BL6NJ_T0079999.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121520985 121543588 + Ift122 protein_coding processed_transcript MGP_C57BL6NJ_T0080000.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121545557 121555646 + Ift122 protein_coding processed_transcript MGP_C57BL6NJ_T0080001.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121554198 121555651 + Ift122 protein_coding processed_transcript MGP_C57BL6NJ_T0080002.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121555430 121557123 + Ift122 protein_coding retained_intron MGP_C57BL6NJ_T0080003.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121562348 121568001 + Ift122 protein_coding retained_intron MGP_C57BL6NJ_T0080004.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121567491 121593586 + Ift122 protein_coding processed_transcript MGP_C57BL6NJ_T0080005.1 MGP_C57BL6NJ_G0031597.1 mouse_genomes_project 6 121571008 121593587 + Ift122 protein_coding retained_intron MGP_C57BL6NJ_T0002321.1 MGP_C57BL6NJ_G0002211.1 mouse_genomes_project 6 155035604 155038474 + TEC TEC MGP_C57BL6NJ_T0000239.1 MGP_C57BL6NJ_G0000178.1 mouse_genomes_project 6 70814671 70815158 - MGP_C57BL6NJ_P0000239 Gm42543 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002254.1 MGP_C57BL6NJ_G0002145.1 mouse_genomes_project 6 113777693 113778871 - TEC TEC MGP_C57BL6NJ_T0011912.1 MGP_C57BL6NJ_G0009997.1 mouse_genomes_project 6 52626765 52626942 + Gm27543 misc_RNA misc_RNA MGP_C57BL6NJ_T0005249.1 MGP_C57BL6NJ_G0004474.1 mouse_genomes_project 6 133985028 133999483 + Platr31 antisense antisense MGP_C57BL6NJ_T0008696.1 MGP_C57BL6NJ_G0007041.1 mouse_genomes_project 6 14440429 14452842 + Gm36669 lincRNA lincRNA MGP_C57BL6NJ_T0016065.1 MGP_C57BL6NJ_G0014110.1 mouse_genomes_project 6 140843373 140843746 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078746.1 MGP_C57BL6NJ_G0031357.1 mouse_genomes_project 6 86392497 86400598 + MGP_C57BL6NJ_P0078746 Gm42688 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018730.1 MGP_C57BL6NJ_G0016024.1 mouse_genomes_project 6 54781588 54790758 - Gm15527 processed_transcript retained_intron MGP_C57BL6NJ_T0018731.1 MGP_C57BL6NJ_G0016024.1 mouse_genomes_project 6 54784015 54814894 - Gm15527 processed_transcript antisense MGP_C57BL6NJ_T0018732.1 MGP_C57BL6NJ_G0016024.1 mouse_genomes_project 6 54784031 54814896 - Gm15527 processed_transcript antisense MGP_C57BL6NJ_T0015723.1 MGP_C57BL6NJ_G0013768.1 mouse_genomes_project 6 42067008 42068365 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005224.1 MGP_C57BL6NJ_G0004450.1 mouse_genomes_project 6 118815636 118837928 - Gm15492 antisense antisense MGP_C57BL6NJ_T0002281.1 MGP_C57BL6NJ_G0002171.1 mouse_genomes_project 6 134224633 134226868 + TEC TEC MGP_C57BL6NJ_T0002122.1 MGP_C57BL6NJ_G0002013.1 mouse_genomes_project 6 51165412 51166378 + TEC TEC MGP_C57BL6NJ_T0079270.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92715800 92731157 - MGP_C57BL6NJ_P0079270 Mcm2 protein_coding protein_coding MGP_C57BL6NJ_T0079271.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92720788 92724282 - Mcm2 protein_coding retained_intron MGP_C57BL6NJ_T0079272.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92722248 92725552 - MGP_C57BL6NJ_P0079272 Mcm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079273.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92725408 92731078 - Mcm2 protein_coding processed_transcript MGP_C57BL6NJ_T0079274.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92725519 92731065 - MGP_C57BL6NJ_P0079274 Mcm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079275.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92725535 92726094 - Mcm2 protein_coding retained_intron MGP_C57BL6NJ_T0079276.1 MGP_C57BL6NJ_G0031452.1 mouse_genomes_project 6 92729263 92731054 - Mcm2 protein_coding retained_intron MGP_C57BL6NJ_T0078442.1 MGP_C57BL6NJ_G0031295.1 mouse_genomes_project 6 73686458 73703065 + MGP_C57BL6NJ_P0078442 Cd8b1 protein_coding protein_coding MGP_C57BL6NJ_T0080436.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706241 129720645 + MGP_C57BL6NJ_P0080436 Clec4n protein_coding protein_coding MGP_C57BL6NJ_T0080437.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706252 129720643 + MGP_C57BL6NJ_P0080437 Clec4n protein_coding protein_coding MGP_C57BL6NJ_T0080438.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706255 129707228 + Clec4n protein_coding processed_transcript MGP_C57BL6NJ_T0080439.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706255 129720643 + MGP_C57BL6NJ_P0080439 Clec4n protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080440.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706255 129720643 + MGP_C57BL6NJ_P0080440 Clec4n protein_coding protein_coding MGP_C57BL6NJ_T0080441.1 MGP_C57BL6NJ_G0031680.1 mouse_genomes_project 6 129706416 129720209 + MGP_C57BL6NJ_P0080441 Clec4n protein_coding protein_coding MGP_C57BL6NJ_T0079660.1 MGP_C57BL6NJ_G0031537.1 mouse_genomes_project 6 113226206 113240219 + MGP_C57BL6NJ_P0079660 Setmar protein_coding protein_coding MGP_C57BL6NJ_T0079661.1 MGP_C57BL6NJ_G0031537.1 mouse_genomes_project 6 113226223 113240219 + MGP_C57BL6NJ_P0079661 Setmar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000422.1 MGP_C57BL6NJ_G0000341.1 mouse_genomes_project 6 70839584 70839870 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0016048.1 MGP_C57BL6NJ_G0014093.1 mouse_genomes_project 6 138817525 138817640 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015939.1 MGP_C57BL6NJ_G0013984.1 mouse_genomes_project 6 113035778 113036391 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002064.1 MGP_C57BL6NJ_G0001955.1 mouse_genomes_project 6 13443387 13445072 + TEC TEC MGP_C57BL6NJ_T0011936.1 MGP_C57BL6NJ_G0010021.1 mouse_genomes_project 6 150480209 150480520 - Gm23069 misc_RNA misc_RNA MGP_C57BL6NJ_T0078875.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87255340 87320249 + MGP_C57BL6NJ_P0078875 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078876.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87255341 87334091 + MGP_C57BL6NJ_P0078876 Zfp638 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078877.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301659 87383761 + MGP_C57BL6NJ_P0078877 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078878.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301663 87322970 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078879.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301663 87334067 + Zfp638 protein_coding processed_transcript MGP_C57BL6NJ_T0078880.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301665 87348932 + MGP_C57BL6NJ_P0078880 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078881.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301666 87358632 + MGP_C57BL6NJ_P0078881 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078882.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301682 87379967 + MGP_C57BL6NJ_P0078882 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078883.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301682 87379969 + MGP_C57BL6NJ_P0078883 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078884.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301684 87379749 + MGP_C57BL6NJ_P0078884 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078885.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301687 87303189 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078886.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87301689 87334103 + Zfp638 protein_coding processed_transcript MGP_C57BL6NJ_T0078887.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87319936 87379969 + MGP_C57BL6NJ_P0078887 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078888.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87319981 87379721 + MGP_C57BL6NJ_P0078888 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078889.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87333709 87335789 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078890.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87338967 87362329 + MGP_C57BL6NJ_P0078890 Zfp638 protein_coding protein_coding MGP_C57BL6NJ_T0078891.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87353994 87359944 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078892.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87358687 87360916 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078893.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87372707 87374935 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078894.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87376699 87379967 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078895.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87376699 87379671 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0078896.1 MGP_C57BL6NJ_G0031382.1 mouse_genomes_project 6 87377451 87379715 + Zfp638 protein_coding retained_intron MGP_C57BL6NJ_T0000290.1 MGP_C57BL6NJ_G0000216.1 mouse_genomes_project 6 72662479 72664309 - MGP_C57BL6NJ_P0000290 Igkv6-14 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077614.1 MGP_C57BL6NJ_G0031051.1 mouse_genomes_project 6 40002681 40015367 - MGP_C57BL6NJ_P0077614 Clec5a protein_coding protein_coding MGP_C57BL6NJ_T0077615.1 MGP_C57BL6NJ_G0031051.1 mouse_genomes_project 6 40004504 40015385 - Clec5a protein_coding processed_transcript MGP_C57BL6NJ_T0077616.1 MGP_C57BL6NJ_G0031051.1 mouse_genomes_project 6 40005637 40015359 - MGP_C57BL6NJ_P0077616 Clec5a protein_coding protein_coding MGP_C57BL6NJ_T0077617.1 MGP_C57BL6NJ_G0031051.1 mouse_genomes_project 6 40005747 40015354 - MGP_C57BL6NJ_P0077617 Clec5a protein_coding protein_coding MGP_C57BL6NJ_T0076886.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15414746 15553281 + St7 protein_coding retained_intron MGP_C57BL6NJ_T0076887.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415760 15695373 + MGP_C57BL6NJ_P0076887 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076888.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415807 15695373 + MGP_C57BL6NJ_P0076888 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076889.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415845 15591228 + MGP_C57BL6NJ_P0076889 St7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076890.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415845 15695376 + MGP_C57BL6NJ_P0076890 St7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076891.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415845 15695317 + MGP_C57BL6NJ_P0076891 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076892.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415845 15695317 + MGP_C57BL6NJ_P0076892 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076893.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415845 15695317 + MGP_C57BL6NJ_P0076893 St7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076894.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15415980 15695317 + MGP_C57BL6NJ_P0076894 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076895.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15472150 15695317 + MGP_C57BL6NJ_P0076895 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076896.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15472150 15695317 + MGP_C57BL6NJ_P0076896 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076897.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479144 15652069 + St7 protein_coding processed_transcript MGP_C57BL6NJ_T0076898.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479144 15695376 + MGP_C57BL6NJ_P0076898 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076899.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479190 15695371 + MGP_C57BL6NJ_P0076899 St7 protein_coding protein_coding MGP_C57BL6NJ_T0076900.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479266 15571335 + St7 protein_coding retained_intron MGP_C57BL6NJ_T0076901.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479303 15695373 + St7 protein_coding retained_intron MGP_C57BL6NJ_T0076902.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15479366 15695352 + St7 protein_coding retained_intron MGP_C57BL6NJ_T0076903.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15575156 15583081 + St7 protein_coding processed_transcript MGP_C57BL6NJ_T0076904.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15575175 15650486 + St7 protein_coding processed_transcript MGP_C57BL6NJ_T0076905.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15591183 15652055 + St7 protein_coding processed_transcript MGP_C57BL6NJ_T0076906.1 MGP_C57BL6NJ_G0030909.1 mouse_genomes_project 6 15651145 15695286 + St7 protein_coding processed_transcript MGP_C57BL6NJ_T0081548.1 MGP_C57BL6NJ_G0031939.1 mouse_genomes_project 6 156113380 156115042 + MGP_C57BL6NJ_P0081548 Rep15 protein_coding protein_coding MGP_C57BL6NJ_T0101810.1 MGP_C57BL6NJ_G0039856.1 mouse_genomes_project 6 88662119 88662235 + Gm22893 snoRNA snoRNA MGP_C57BL6NJ_T0081475.1 MGP_C57BL6NJ_G0031928.1 mouse_genomes_project 6 155018551 155053911 + MGP_C57BL6NJ_P0081475 Sspn protein_coding protein_coding MGP_C57BL6NJ_T0081476.1 MGP_C57BL6NJ_G0031928.1 mouse_genomes_project 6 155022592 155053911 + MGP_C57BL6NJ_P0081476 Sspn protein_coding protein_coding MGP_C57BL6NJ_T0081477.1 MGP_C57BL6NJ_G0031928.1 mouse_genomes_project 6 155041957 155053911 + MGP_C57BL6NJ_P0081477 Sspn protein_coding protein_coding MGP_C57BL6NJ_T0002706.1 MGP_C57BL6NJ_G0002585.1 mouse_genomes_project 6 41056791 41056841 + MGP_C57BL6NJ_P0002706 Trbj1-5 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002144.1 MGP_C57BL6NJ_G0002035.1 mouse_genomes_project 6 73921247 73924466 - TEC TEC MGP_C57BL6NJ_T0081315.1 MGP_C57BL6NJ_G0031898.1 mouse_genomes_project 6 150473617 150541638 - MGP_C57BL6NJ_P0081315 Gm5724 protein_coding protein_coding MGP_C57BL6NJ_T0077957.1 MGP_C57BL6NJ_G0031160.1 mouse_genomes_project 6 49524320 49532812 + MGP_C57BL6NJ_P0077957 Fam221a protein_coding protein_coding MGP_C57BL6NJ_T0077958.1 MGP_C57BL6NJ_G0031160.1 mouse_genomes_project 6 49524333 49546769 + MGP_C57BL6NJ_P0077958 Fam221a protein_coding protein_coding MGP_C57BL6NJ_T0077959.1 MGP_C57BL6NJ_G0031160.1 mouse_genomes_project 6 49536953 49543339 + Fam221a protein_coding processed_transcript MGP_C57BL6NJ_T0077960.1 MGP_C57BL6NJ_G0031160.1 mouse_genomes_project 6 49543135 49547157 + Fam221a protein_coding retained_intron MGP_C57BL6NJ_T0077961.1 MGP_C57BL6NJ_G0031160.1 mouse_genomes_project 6 49545362 49547102 + Fam221a protein_coding retained_intron MGP_C57BL6NJ_T0103232.1 MGP_C57BL6NJ_G0041026.1 mouse_genomes_project 6 33280894 33281873 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005211.1 MGP_C57BL6NJ_G0004443.1 mouse_genomes_project 6 107017207 107058665 + Gm44188 antisense antisense MGP_C57BL6NJ_T0005212.1 MGP_C57BL6NJ_G0004443.1 mouse_genomes_project 6 107017229 107088676 + Gm44188 antisense antisense MGP_C57BL6NJ_T0078140.1 MGP_C57BL6NJ_G0031201.1 mouse_genomes_project 6 55403185 55488249 + MGP_C57BL6NJ_P0078140 Znrf2 protein_coding protein_coding MGP_C57BL6NJ_T0078141.1 MGP_C57BL6NJ_G0031201.1 mouse_genomes_project 6 55403539 55473170 + MGP_C57BL6NJ_P0078141 Znrf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078142.1 MGP_C57BL6NJ_G0031201.1 mouse_genomes_project 6 55403714 55479860 + MGP_C57BL6NJ_P0078142 Znrf2 protein_coding protein_coding MGP_C57BL6NJ_T0077639.1 MGP_C57BL6NJ_G0031065.1 mouse_genomes_project 6 40953983 40975892 + MGP_C57BL6NJ_P0077639 Prss1 protein_coding protein_coding MGP_C57BL6NJ_T0103260.1 MGP_C57BL6NJ_G0041054.1 mouse_genomes_project 6 59353107 59354032 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015807.1 MGP_C57BL6NJ_G0013852.1 mouse_genomes_project 6 67224074 67224461 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077746.1 MGP_C57BL6NJ_G0031107.1 mouse_genomes_project 6 42779184 42785395 + MGP_C57BL6NJ_P0077746 protein_coding protein_coding MGP_C57BL6NJ_T0015883.1 MGP_C57BL6NJ_G0013928.1 mouse_genomes_project 6 88567348 88567876 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100544.1 MGP_C57BL6NJ_G0038590.1 mouse_genomes_project 6 118050432 118050539 - Gm23002 snRNA snRNA MGP_C57BL6NJ_T0000399.1 MGP_C57BL6NJ_G0000318.1 mouse_genomes_project 6 69541920 69542386 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0103295.1 MGP_C57BL6NJ_G0041088.1 mouse_genomes_project 6 137913965 138141089 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016064.1 MGP_C57BL6NJ_G0014109.1 mouse_genomes_project 6 140787724 140788153 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015822.1 MGP_C57BL6NJ_G0013867.1 mouse_genomes_project 6 68811115 68811758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005257.1 MGP_C57BL6NJ_G0004481.1 mouse_genomes_project 6 135481410 135523881 + Gm10069 antisense antisense MGP_C57BL6NJ_T0005258.1 MGP_C57BL6NJ_G0004481.1 mouse_genomes_project 6 135481992 135556804 + Gm10069 antisense antisense MGP_C57BL6NJ_T0005259.1 MGP_C57BL6NJ_G0004481.1 mouse_genomes_project 6 135518957 135538842 + Gm10069 antisense antisense MGP_C57BL6NJ_T0077656.1 MGP_C57BL6NJ_G0031072.1 mouse_genomes_project 6 41309490 41315493 - MGP_C57BL6NJ_P0077656 Olfr459 protein_coding protein_coding MGP_C57BL6NJ_T0077657.1 MGP_C57BL6NJ_G0031072.1 mouse_genomes_project 6 41309490 41310599 - MGP_C57BL6NJ_P0077657 Olfr459 protein_coding protein_coding MGP_C57BL6NJ_T0015737.1 MGP_C57BL6NJ_G0013782.1 mouse_genomes_project 6 47711339 47711718 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079611.1 MGP_C57BL6NJ_G0031528.1 mouse_genomes_project 6 105828735 106072324 - MGP_C57BL6NJ_P0079611 Pdzrn3 protein_coding protein_coding MGP_C57BL6NJ_T0079612.1 MGP_C57BL6NJ_G0031528.1 mouse_genomes_project 6 105828736 105879205 - MGP_C57BL6NJ_P0079612 Pdzrn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079613.1 MGP_C57BL6NJ_G0031528.1 mouse_genomes_project 6 105836099 106048049 - Pdzrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0079614.1 MGP_C57BL6NJ_G0031528.1 mouse_genomes_project 6 105850174 105879513 - Pdzrn3 protein_coding retained_intron MGP_C57BL6NJ_T0079615.1 MGP_C57BL6NJ_G0031528.1 mouse_genomes_project 6 105860196 106071769 - Pdzrn3 protein_coding processed_transcript MGP_C57BL6NJ_T0008897.1 MGP_C57BL6NJ_G0007190.1 mouse_genomes_project 6 123724397 123724718 + Gm29509 lincRNA lincRNA MGP_C57BL6NJ_T0077698.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889593 41891112 + MGP_C57BL6NJ_P0077698 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077699.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889743 41891571 + MGP_C57BL6NJ_P0077699 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077700.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889791 41898512 + MGP_C57BL6NJ_P0077700 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077701.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889832 41898342 + MGP_C57BL6NJ_P0077701 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077702.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889996 41898342 + Zyx protein_coding retained_intron MGP_C57BL6NJ_T0077703.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41889996 41898342 + MGP_C57BL6NJ_P0077703 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077704.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41890001 41891728 + Zyx protein_coding processed_transcript MGP_C57BL6NJ_T0077705.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41890002 41900163 + MGP_C57BL6NJ_P0077705 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077706.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41890034 41891028 + MGP_C57BL6NJ_P0077706 Zyx protein_coding protein_coding MGP_C57BL6NJ_T0077707.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41893441 41895987 + Zyx protein_coding processed_transcript MGP_C57BL6NJ_T0077708.1 MGP_C57BL6NJ_G0031085.1 mouse_genomes_project 6 41895086 41896211 + Zyx protein_coding processed_transcript MGP_C57BL6NJ_T0100539.1 MGP_C57BL6NJ_G0038585.1 mouse_genomes_project 6 102114114 102114221 + Gm24565 snRNA snRNA MGP_C57BL6NJ_T0079701.1 MGP_C57BL6NJ_G0031547.1 mouse_genomes_project 6 117933774 117951272 - MGP_C57BL6NJ_P0079701 Oxtr protein_coding protein_coding MGP_C57BL6NJ_T0079702.1 MGP_C57BL6NJ_G0031547.1 mouse_genomes_project 6 117933778 117949723 - MGP_C57BL6NJ_P0079702 Oxtr protein_coding protein_coding MGP_C57BL6NJ_T0081326.1 MGP_C57BL6NJ_G0031902.1 mouse_genomes_project 6 150884168 151004106 - MGP_C57BL6NJ_P0081326 Slco1a6 protein_coding protein_coding MGP_C57BL6NJ_T0081327.1 MGP_C57BL6NJ_G0031902.1 mouse_genomes_project 6 150910993 151004102 - Slco1a6 protein_coding retained_intron MGP_C57BL6NJ_T0081328.1 MGP_C57BL6NJ_G0031902.1 mouse_genomes_project 6 150978992 151027315 - MGP_C57BL6NJ_P0081328 Slco1a6 protein_coding protein_coding MGP_C57BL6NJ_T0079685.1 MGP_C57BL6NJ_G0031541.1 mouse_genomes_project 6 113987197 114029388 + MGP_C57BL6NJ_P0079685 Arl8b protein_coding protein_coding MGP_C57BL6NJ_T0000402.1 MGP_C57BL6NJ_G0000321.1 mouse_genomes_project 6 69851518 69851978 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0080090.1 MGP_C57BL6NJ_G0031615.1 mouse_genomes_project 6 122914397 122920931 + MGP_C57BL6NJ_P0080090 Cxcl12 protein_coding protein_coding MGP_C57BL6NJ_T0080091.1 MGP_C57BL6NJ_G0031615.1 mouse_genomes_project 6 122914436 122927228 + MGP_C57BL6NJ_P0080091 Cxcl12 protein_coding protein_coding MGP_C57BL6NJ_T0080092.1 MGP_C57BL6NJ_G0031615.1 mouse_genomes_project 6 122914439 122921989 + Cxcl12 protein_coding retained_intron MGP_C57BL6NJ_T0080093.1 MGP_C57BL6NJ_G0031615.1 mouse_genomes_project 6 122914439 122927229 + MGP_C57BL6NJ_P0080093 Cxcl12 protein_coding protein_coding MGP_C57BL6NJ_T0076819.1 MGP_C57BL6NJ_G0030899.1 mouse_genomes_project 6 11356622 11360406 - MGP_C57BL6NJ_P0076819 2610001J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0076820.1 MGP_C57BL6NJ_G0030899.1 mouse_genomes_project 6 11358687 11360354 - MGP_C57BL6NJ_P0076820 2610001J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0076821.1 MGP_C57BL6NJ_G0030899.1 mouse_genomes_project 6 11358747 11360353 - MGP_C57BL6NJ_P0076821 2610001J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0076822.1 MGP_C57BL6NJ_G0030899.1 mouse_genomes_project 6 11358888 11360353 - MGP_C57BL6NJ_P0076822 2610001J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0076730.1 MGP_C57BL6NJ_G0030880.1 mouse_genomes_project 6 4590953 4599892 + MGP_C57BL6NJ_P0076730 Tac1 protein_coding protein_coding MGP_C57BL6NJ_T0076731.1 MGP_C57BL6NJ_G0030880.1 mouse_genomes_project 6 4590961 4599898 + MGP_C57BL6NJ_P0076731 Tac1 protein_coding protein_coding MGP_C57BL6NJ_T0076732.1 MGP_C57BL6NJ_G0030880.1 mouse_genomes_project 6 4590975 4599616 + MGP_C57BL6NJ_P0076732 Tac1 protein_coding protein_coding MGP_C57BL6NJ_T0076733.1 MGP_C57BL6NJ_G0030880.1 mouse_genomes_project 6 4599283 4602749 + Tac1 protein_coding processed_transcript MGP_C57BL6NJ_T0079877.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259733 119263507 - MGP_C57BL6NJ_P0079877 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079878.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259733 119261307 - MGP_C57BL6NJ_P0079878 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079879.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259738 119263085 - MGP_C57BL6NJ_P0079879 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079880.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259746 119263475 - MGP_C57BL6NJ_P0079880 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079881.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259786 119263074 - MGP_C57BL6NJ_P0079881 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079882.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119259864 119263056 - MGP_C57BL6NJ_P0079882 Ghrl protein_coding protein_coding MGP_C57BL6NJ_T0079883.1 MGP_C57BL6NJ_G0031575.1 mouse_genomes_project 6 119262803 119263081 - Ghrl protein_coding retained_intron MGP_C57BL6NJ_T0102546.1 MGP_C57BL6NJ_G0040390.1 mouse_genomes_project 6 141770274 141773679 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102547.1 MGP_C57BL6NJ_G0040390.1 mouse_genomes_project 6 141770274 141773680 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102548.1 MGP_C57BL6NJ_G0040390.1 mouse_genomes_project 6 141771571 141773679 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0000276.1 MGP_C57BL6NJ_G0000206.1 mouse_genomes_project 6 72263007 72263581 - MGP_C57BL6NJ_P0000276 Igkv8-28 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000277.1 MGP_C57BL6NJ_G0000206.1 mouse_genomes_project 6 72263007 72263312 - MGP_C57BL6NJ_P0000277 Igkv8-28 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002875.1 MGP_C57BL6NJ_G0002729.1 mouse_genomes_project 6 40554475 40554765 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0078474.1 MGP_C57BL6NJ_G0031302.1 mouse_genomes_project 6 74223272 74234086 - MGP_C57BL6NJ_P0078474 Mrpl35 protein_coding protein_coding MGP_C57BL6NJ_T0078475.1 MGP_C57BL6NJ_G0031302.1 mouse_genomes_project 6 74226438 74234039 - MGP_C57BL6NJ_P0078475 Mrpl35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078476.1 MGP_C57BL6NJ_G0031302.1 mouse_genomes_project 6 74227944 74237245 - Mrpl35 protein_coding processed_transcript MGP_C57BL6NJ_T0015952.1 MGP_C57BL6NJ_G0013997.1 mouse_genomes_project 6 118022654 118024220 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005081.1 MGP_C57BL6NJ_G0004356.1 mouse_genomes_project 6 29275525 29278408 - Gm13781 antisense antisense MGP_C57BL6NJ_T0077634.1 MGP_C57BL6NJ_G0031060.1 mouse_genomes_project 6 40499303 40504545 - MGP_C57BL6NJ_P0077634 2210010C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0078645.1 MGP_C57BL6NJ_G0031333.1 mouse_genomes_project 6 81316604 81319596 - MGP_C57BL6NJ_P0078645 Reg3d protein_coding protein_coding MGP_C57BL6NJ_T0078646.1 MGP_C57BL6NJ_G0031333.1 mouse_genomes_project 6 81316604 81319596 - MGP_C57BL6NJ_P0078646 Reg3d protein_coding protein_coding MGP_C57BL6NJ_T0078647.1 MGP_C57BL6NJ_G0031333.1 mouse_genomes_project 6 81316654 81319244 - MGP_C57BL6NJ_P0078647 Reg3d protein_coding protein_coding MGP_C57BL6NJ_T0078143.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55519392 55570226 - MGP_C57BL6NJ_P0078143 Nod1 protein_coding protein_coding MGP_C57BL6NJ_T0078144.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55519392 55571177 - MGP_C57BL6NJ_P0078144 Nod1 protein_coding protein_coding MGP_C57BL6NJ_T0078145.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55520202 55523542 - Nod1 protein_coding processed_transcript MGP_C57BL6NJ_T0078146.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55523532 55538870 - MGP_C57BL6NJ_P0078146 Nod1 protein_coding protein_coding MGP_C57BL6NJ_T0078147.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55532770 55535268 - Nod1 protein_coding processed_transcript MGP_C57BL6NJ_T0078148.1 MGP_C57BL6NJ_G0031202.1 mouse_genomes_project 6 55544892 55563251 - MGP_C57BL6NJ_P0078148 Nod1 protein_coding protein_coding MGP_C57BL6NJ_T0015974.1 MGP_C57BL6NJ_G0014019.1 mouse_genomes_project 6 122964127 122964504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076813.1 MGP_C57BL6NJ_G0030897.1 mouse_genomes_project 6 11103548 11158736 - MGP_C57BL6NJ_P0076813 Bmt2 protein_coding protein_coding MGP_C57BL6NJ_T0076814.1 MGP_C57BL6NJ_G0030897.1 mouse_genomes_project 6 11104691 11158708 - MGP_C57BL6NJ_P0076814 Bmt2 protein_coding protein_coding MGP_C57BL6NJ_T0079989.1 MGP_C57BL6NJ_G0031596.1 mouse_genomes_project 6 121508100 121520712 - MGP_C57BL6NJ_P0079989 Mbd4 protein_coding protein_coding MGP_C57BL6NJ_T0079990.1 MGP_C57BL6NJ_G0031596.1 mouse_genomes_project 6 121508602 121516046 - Mbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0079991.1 MGP_C57BL6NJ_G0031596.1 mouse_genomes_project 6 121509747 121520706 - MGP_C57BL6NJ_P0079991 Mbd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079992.1 MGP_C57BL6NJ_G0031596.1 mouse_genomes_project 6 121509747 121516307 - MGP_C57BL6NJ_P0079992 Mbd4 protein_coding protein_coding MGP_C57BL6NJ_T0079993.1 MGP_C57BL6NJ_G0031596.1 mouse_genomes_project 6 121515032 121520629 - MGP_C57BL6NJ_P0079993 Mbd4 protein_coding protein_coding MGP_C57BL6NJ_T0015719.1 MGP_C57BL6NJ_G0013764.1 mouse_genomes_project 6 40705343 40705787 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015662.1 MGP_C57BL6NJ_G0013707.1 mouse_genomes_project 6 15437403 15438657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081182.1 MGP_C57BL6NJ_G0031877.1 mouse_genomes_project 6 145268476 145312267 + MGP_C57BL6NJ_P0081182 Pde6h protein_coding protein_coding MGP_C57BL6NJ_T0081186.1 MGP_C57BL6NJ_G0031877.1 mouse_genomes_project 6 145303615 145317891 + MGP_C57BL6NJ_P0081186 Pde6h protein_coding protein_coding MGP_C57BL6NJ_T0081187.1 MGP_C57BL6NJ_G0031877.1 mouse_genomes_project 6 145303625 145312512 + Pde6h protein_coding retained_intron MGP_C57BL6NJ_T0081188.1 MGP_C57BL6NJ_G0031877.1 mouse_genomes_project 6 145308289 145312298 + MGP_C57BL6NJ_P0081188 Pde6h protein_coding protein_coding MGP_C57BL6NJ_T0099499.1 MGP_C57BL6NJ_G0037552.1 mouse_genomes_project 6 94768453 94769033 - Gm44105 sense_intronic sense_intronic MGP_C57BL6NJ_T0005160.1 MGP_C57BL6NJ_G0004413.1 mouse_genomes_project 6 87142186 87142939 - 1700124L16Rik antisense antisense MGP_C57BL6NJ_T0005161.1 MGP_C57BL6NJ_G0004413.1 mouse_genomes_project 6 87142186 87143296 - 1700124L16Rik antisense antisense MGP_C57BL6NJ_T0005162.1 MGP_C57BL6NJ_G0004413.1 mouse_genomes_project 6 87142186 87143273 - 1700124L16Rik antisense antisense MGP_C57BL6NJ_T0015679.1 MGP_C57BL6NJ_G0013724.1 mouse_genomes_project 6 20889317 20890503 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078847.1 MGP_C57BL6NJ_G0031376.1 mouse_genomes_project 6 87082363 87112979 + MGP_C57BL6NJ_P0078847 Vax2 protein_coding protein_coding MGP_C57BL6NJ_T0008762.1 MGP_C57BL6NJ_G0007083.1 mouse_genomes_project 6 48434456 48454978 - Gm44696 lincRNA lincRNA MGP_C57BL6NJ_T0080693.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131945646 131952402 + MGP_C57BL6NJ_P0080693 Vamp1 protein_coding protein_coding MGP_C57BL6NJ_T0080694.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131945676 131952259 + MGP_C57BL6NJ_P0080694 Vamp1 protein_coding protein_coding MGP_C57BL6NJ_T0080695.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131945676 131971310 + MGP_C57BL6NJ_P0080695 Vamp1 protein_coding protein_coding MGP_C57BL6NJ_T0080696.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131948669 131951748 + MGP_C57BL6NJ_P0080696 Vamp1 protein_coding protein_coding MGP_C57BL6NJ_T0080698.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131961353 131976025 + Vamp1 protein_coding processed_transcript MGP_C57BL6NJ_T0080699.1 MGP_C57BL6NJ_G0031725.1 mouse_genomes_project 6 131961353 131969995 + Vamp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079515.1 MGP_C57BL6NJ_G0031510.1 mouse_genomes_project 6 101145667 101387037 - MGP_C57BL6NJ_P0079515 Fam19a4 protein_coding protein_coding MGP_C57BL6NJ_T0079516.1 MGP_C57BL6NJ_G0031510.1 mouse_genomes_project 6 101383251 101387017 - Fam19a4 protein_coding retained_intron MGP_C57BL6NJ_T0015876.1 MGP_C57BL6NJ_G0013921.1 mouse_genomes_project 6 86271067 86271824 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008786.1 MGP_C57BL6NJ_G0007101.1 mouse_genomes_project 6 53689942 53695827 + Gm4872 lincRNA lincRNA MGP_C57BL6NJ_T0000448.1 MGP_C57BL6NJ_G0000367.1 mouse_genomes_project 6 71727343 71727718 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0081117.1 MGP_C57BL6NJ_G0031859.1 mouse_genomes_project 6 143379112 143390777 - MGP_C57BL6NJ_P0081117 Gsg1 protein_coding protein_coding MGP_C57BL6NJ_T0081118.1 MGP_C57BL6NJ_G0031859.1 mouse_genomes_project 6 143379115 143396981 - MGP_C57BL6NJ_P0081118 Gsg1 protein_coding protein_coding MGP_C57BL6NJ_T0081119.1 MGP_C57BL6NJ_G0031859.1 mouse_genomes_project 6 143379115 143397137 - MGP_C57BL6NJ_P0081119 Gsg1 protein_coding protein_coding MGP_C57BL6NJ_T0081120.1 MGP_C57BL6NJ_G0031859.1 mouse_genomes_project 6 143379122 143397162 - MGP_C57BL6NJ_P0081120 Gsg1 protein_coding protein_coding MGP_C57BL6NJ_T0080263.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126397972 126459714 + MGP_C57BL6NJ_P0080263 Kdm5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080264.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126397972 126481697 + MGP_C57BL6NJ_P0080264 Kdm5a protein_coding protein_coding MGP_C57BL6NJ_T0080265.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126397980 126403452 + Kdm5a protein_coding retained_intron MGP_C57BL6NJ_T0080266.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126398306 126459687 + MGP_C57BL6NJ_P0080266 Kdm5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080267.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126409597 126424648 + MGP_C57BL6NJ_P0080267 Kdm5a protein_coding protein_coding MGP_C57BL6NJ_T0080268.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126446122 126454152 + Kdm5a protein_coding retained_intron MGP_C57BL6NJ_T0080269.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126464393 126467405 + Kdm5a protein_coding retained_intron MGP_C57BL6NJ_T0080270.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126466977 126469166 + Kdm5a protein_coding retained_intron MGP_C57BL6NJ_T0080271.1 MGP_C57BL6NJ_G0031641.1 mouse_genomes_project 6 126467326 126476834 + Kdm5a protein_coding processed_transcript MGP_C57BL6NJ_T0000296.1 MGP_C57BL6NJ_G0000221.1 mouse_genomes_project 6 72840273 72840873 + MGP_C57BL6NJ_P0000296 Igkv3-7 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077744.1 MGP_C57BL6NJ_G0031106.1 mouse_genomes_project 6 42734687 42744773 + MGP_C57BL6NJ_P0077744 Olfr441 protein_coding protein_coding MGP_C57BL6NJ_T0077745.1 MGP_C57BL6NJ_G0031106.1 mouse_genomes_project 6 42744009 42744773 + MGP_C57BL6NJ_P0077745 Olfr441 protein_coding protein_coding MGP_C57BL6NJ_T0011035.1 MGP_C57BL6NJ_G0009120.1 mouse_genomes_project 6 88877801 88877883 - Mir705 miRNA miRNA MGP_C57BL6NJ_T0015767.1 MGP_C57BL6NJ_G0013812.1 mouse_genomes_project 6 53494271 53494811 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011908.1 MGP_C57BL6NJ_G0009993.1 mouse_genomes_project 6 52623865 52624052 + Gm27492 misc_RNA misc_RNA MGP_C57BL6NJ_T0002818.1 MGP_C57BL6NJ_G0002681.1 mouse_genomes_project 6 40584417 40584931 + MGP_C57BL6NJ_P0002818 Trbv12-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0079775.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838152 118846917 + MGP_C57BL6NJ_P0079775 Ogg1 protein_coding protein_coding MGP_C57BL6NJ_T0079776.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838165 118839923 + Ogg1 protein_coding retained_intron MGP_C57BL6NJ_T0079777.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838179 118846913 + MGP_C57BL6NJ_P0079777 Ogg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079778.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838188 118840430 + Ogg1 protein_coding processed_transcript MGP_C57BL6NJ_T0079779.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838193 118846714 + MGP_C57BL6NJ_P0079779 Ogg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079780.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118838291 118840054 + Ogg1 protein_coding retained_intron MGP_C57BL6NJ_T0079781.1 MGP_C57BL6NJ_G0031556.1 mouse_genomes_project 6 118846046 118847797 + Ogg1 protein_coding retained_intron MGP_C57BL6NJ_T0078459.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73983869 74031007 - MGP_C57BL6NJ_P0078459 Kdm3a protein_coding protein_coding MGP_C57BL6NJ_T0078460.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73983871 74030788 - MGP_C57BL6NJ_P0078460 Kdm3a protein_coding protein_coding MGP_C57BL6NJ_T0078461.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73983934 74031092 - MGP_C57BL6NJ_P0078461 Kdm3a protein_coding protein_coding MGP_C57BL6NJ_T0078462.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73985025 73986830 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078463.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73985454 73987469 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078464.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73988861 73992060 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078465.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73989506 74007068 - Kdm3a protein_coding processed_transcript MGP_C57BL6NJ_T0078466.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73991849 73994296 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078467.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73994202 74030788 - MGP_C57BL6NJ_P0078467 Kdm3a protein_coding protein_coding MGP_C57BL6NJ_T0078468.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73994303 73996032 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078469.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73995599 74010117 - MGP_C57BL6NJ_P0078469 Kdm3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078470.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73997619 74019787 - Kdm3a protein_coding retained_intron MGP_C57BL6NJ_T0078471.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 73998008 73998857 - Kdm3a protein_coding processed_transcript MGP_C57BL6NJ_T0078472.1 MGP_C57BL6NJ_G0031300.1 mouse_genomes_project 6 74009858 74019510 - Kdm3a protein_coding processed_transcript MGP_C57BL6NJ_T0005196.1 MGP_C57BL6NJ_G0004435.1 mouse_genomes_project 6 95159375 95159919 - Gm14573 antisense antisense MGP_C57BL6NJ_T0002242.1 MGP_C57BL6NJ_G0002133.1 mouse_genomes_project 6 105823418 105826277 + TEC TEC MGP_C57BL6NJ_T0077448.1 MGP_C57BL6NJ_G0031013.1 mouse_genomes_project 6 36432567 36557934 - MGP_C57BL6NJ_P0077448 Creb3l2 protein_coding protein_coding MGP_C57BL6NJ_T0077449.1 MGP_C57BL6NJ_G0031013.1 mouse_genomes_project 6 36439606 36441850 - Creb3l2 protein_coding processed_transcript MGP_C57BL6NJ_T0002878.1 MGP_C57BL6NJ_G0002732.1 mouse_genomes_project 6 40592410 40592895 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0010997.1 MGP_C57BL6NJ_G0009082.1 mouse_genomes_project 6 12985800 12985911 + Gm25470 miRNA miRNA MGP_C57BL6NJ_T0099142.1 MGP_C57BL6NJ_G0037206.1 mouse_genomes_project 6 154040302 154040417 - Gm23071 rRNA rRNA MGP_C57BL6NJ_T0008927.1 MGP_C57BL6NJ_G0007215.1 mouse_genomes_project 6 142424155 142444675 - Gm44448 lincRNA lincRNA MGP_C57BL6NJ_T0002230.1 MGP_C57BL6NJ_G0002121.1 mouse_genomes_project 6 97362704 97365182 + TEC TEC MGP_C57BL6NJ_T0079342.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94359403 94386346 - MGP_C57BL6NJ_P0079342 Cfap100 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079343.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94359660 94385991 - MGP_C57BL6NJ_P0079343 Cfap100 protein_coding protein_coding MGP_C57BL6NJ_T0079344.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94359662 94385972 - MGP_C57BL6NJ_P0079344 Cfap100 protein_coding protein_coding MGP_C57BL6NJ_T0079345.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94378497 94386356 - MGP_C57BL6NJ_P0079345 Cfap100 protein_coding protein_coding MGP_C57BL6NJ_T0079346.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94378710 94385994 - MGP_C57BL6NJ_P0079346 Cfap100 protein_coding protein_coding MGP_C57BL6NJ_T0079347.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94384042 94385954 - MGP_C57BL6NJ_P0079347 Cfap100 protein_coding protein_coding MGP_C57BL6NJ_T0079348.1 MGP_C57BL6NJ_G0031476.1 mouse_genomes_project 6 94385454 94386144 - Cfap100 protein_coding processed_transcript MGP_C57BL6NJ_T0011017.1 MGP_C57BL6NJ_G0009102.1 mouse_genomes_project 6 48480338 48480412 + Gm24325 miRNA miRNA MGP_C57BL6NJ_T0077082.1 MGP_C57BL6NJ_G0030952.1 mouse_genomes_project 6 27727317 27737654 - MGP_C57BL6NJ_P0077082 Prrt4 protein_coding protein_coding MGP_C57BL6NJ_T0005165.1 MGP_C57BL6NJ_G0004416.1 mouse_genomes_project 6 88379791 88383665 + Gm44012 antisense antisense MGP_C57BL6NJ_T0002250.1 MGP_C57BL6NJ_G0002141.1 mouse_genomes_project 6 108378672 108381143 + TEC TEC MGP_C57BL6NJ_T0008910.1 MGP_C57BL6NJ_G0007203.1 mouse_genomes_project 6 134154276 134157283 - Gm43635 lincRNA lincRNA MGP_C57BL6NJ_T0002105.1 MGP_C57BL6NJ_G0001996.1 mouse_genomes_project 6 45120808 45122071 + TEC TEC MGP_C57BL6NJ_T0011914.1 MGP_C57BL6NJ_G0009999.1 mouse_genomes_project 6 52646213 52646591 + Gm27985 misc_RNA misc_RNA MGP_C57BL6NJ_T0078698.1 MGP_C57BL6NJ_G0031349.1 mouse_genomes_project 6 86316327 86319710 + Loxl3 protein_coding processed_transcript MGP_C57BL6NJ_T0078699.1 MGP_C57BL6NJ_G0031349.1 mouse_genomes_project 6 86316327 86335612 + MGP_C57BL6NJ_P0078699 Loxl3 protein_coding protein_coding MGP_C57BL6NJ_T0078700.1 MGP_C57BL6NJ_G0031349.1 mouse_genomes_project 6 86316327 86335612 + MGP_C57BL6NJ_P0078700 Loxl3 protein_coding protein_coding MGP_C57BL6NJ_T0078701.1 MGP_C57BL6NJ_G0031349.1 mouse_genomes_project 6 86320554 86327250 + Loxl3 protein_coding processed_transcript MGP_C57BL6NJ_T0078702.1 MGP_C57BL6NJ_G0031349.1 mouse_genomes_project 6 86332918 86333718 + Loxl3 protein_coding retained_intron MGP_C57BL6NJ_T0015777.1 MGP_C57BL6NJ_G0013822.1 mouse_genomes_project 6 59359818 59360248 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078414.1 MGP_C57BL6NJ_G0031285.1 mouse_genomes_project 6 69026742 69114894 - MGP_C57BL6NJ_P0078414 Il23r protein_coding protein_coding MGP_C57BL6NJ_T0002880.1 MGP_C57BL6NJ_G0002734.1 mouse_genomes_project 6 40671105 40671396 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0079646.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843824 111852386 + MGP_C57BL6NJ_P0079646 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0079647.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843845 111856576 + MGP_C57BL6NJ_P0079647 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0079648.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843870 111857179 + MGP_C57BL6NJ_P0079648 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0079649.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843870 111856359 + MGP_C57BL6NJ_P0079649 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0079650.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843874 111844869 + Trnt1 protein_coding retained_intron MGP_C57BL6NJ_T0079651.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843917 111847760 + Trnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0079652.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111843990 111848056 + MGP_C57BL6NJ_P0079652 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0079653.1 MGP_C57BL6NJ_G0031534.1 mouse_genomes_project 6 111844211 111849170 + MGP_C57BL6NJ_P0079653 Trnt1 protein_coding protein_coding MGP_C57BL6NJ_T0076919.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16162716 16233992 - Cttnbp2 protein_coding retained_intron MGP_C57BL6NJ_T0076920.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16162803 16240212 - MGP_C57BL6NJ_P0076920 Cttnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0076921.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16162945 16327469 - MGP_C57BL6NJ_P0076921 Cttnbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076922.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16163459 16327541 - MGP_C57BL6NJ_P0076922 Cttnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0076923.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16186512 16208738 - MGP_C57BL6NJ_P0076923 Cttnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0076924.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16237700 16327519 - Cttnbp2 protein_coding retained_intron MGP_C57BL6NJ_T0076925.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16241011 16325811 - MGP_C57BL6NJ_P0076925 Cttnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0076926.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16255087 16312443 - MGP_C57BL6NJ_P0076926 Cttnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0076927.1 MGP_C57BL6NJ_G0030913.1 mouse_genomes_project 6 16312012 16327563 - Cttnbp2 protein_coding retained_intron MGP_C57BL6NJ_T0015797.1 MGP_C57BL6NJ_G0013842.1 mouse_genomes_project 6 66545683 66546115 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078810.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86667087 86677923 + MGP_C57BL6NJ_P0078810 Bola3 protein_coding protein_coding MGP_C57BL6NJ_T0078811.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86667156 86677898 + MGP_C57BL6NJ_P0078811 Bola3 protein_coding protein_coding MGP_C57BL6NJ_T0078812.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86667386 86679663 + MGP_C57BL6NJ_P0078812 Bola3 protein_coding protein_coding MGP_C57BL6NJ_T0078813.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86667431 86668341 + Bola3 protein_coding processed_transcript MGP_C57BL6NJ_T0078814.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86667460 86671138 + Bola3 protein_coding retained_intron MGP_C57BL6NJ_T0078815.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86668980 86671149 + Bola3 protein_coding retained_intron MGP_C57BL6NJ_T0078816.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86668980 86677943 + Bola3 protein_coding retained_intron MGP_C57BL6NJ_T0078817.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86670035 86677860 + Bola3 protein_coding processed_transcript MGP_C57BL6NJ_T0078818.1 MGP_C57BL6NJ_G0031369.1 mouse_genomes_project 6 86671253 86678774 + Bola3 protein_coding processed_transcript MGP_C57BL6NJ_T0079697.1 MGP_C57BL6NJ_G0031545.1 mouse_genomes_project 6 117824100 117853137 - MGP_C57BL6NJ_P0079697 Ssu2 protein_coding protein_coding MGP_C57BL6NJ_T0079698.1 MGP_C57BL6NJ_G0031545.1 mouse_genomes_project 6 117833857 117842855 - Ssu2 protein_coding processed_transcript MGP_C57BL6NJ_T0079699.1 MGP_C57BL6NJ_G0031545.1 mouse_genomes_project 6 117834392 117840882 - Ssu2 protein_coding retained_intron MGP_C57BL6NJ_T0079361.1 MGP_C57BL6NJ_G0031479.1 mouse_genomes_project 6 94573737 94616680 + MGP_C57BL6NJ_P0079361 Slc41a3 protein_coding protein_coding MGP_C57BL6NJ_T0079362.1 MGP_C57BL6NJ_G0031479.1 mouse_genomes_project 6 94588157 94616680 + MGP_C57BL6NJ_P0079362 Slc41a3 protein_coding protein_coding MGP_C57BL6NJ_T0078211.1 MGP_C57BL6NJ_G0031218.1 mouse_genomes_project 6 57571691 57623351 + MGP_C57BL6NJ_P0078211 Fkbp9 protein_coding protein_coding MGP_C57BL6NJ_T0078212.1 MGP_C57BL6NJ_G0031218.1 mouse_genomes_project 6 57592493 57593821 + Fkbp9 protein_coding retained_intron MGP_C57BL6NJ_T0080166.1 MGP_C57BL6NJ_G0031628.1 mouse_genomes_project 6 125080869 125123483 + MGP_C57BL6NJ_P0080166 Dcp1b protein_coding protein_coding MGP_C57BL6NJ_T0080167.1 MGP_C57BL6NJ_G0031628.1 mouse_genomes_project 6 125080904 125122052 + MGP_C57BL6NJ_P0080167 Dcp1b protein_coding protein_coding MGP_C57BL6NJ_T0080168.1 MGP_C57BL6NJ_G0031628.1 mouse_genomes_project 6 125097922 125122073 + Dcp1b protein_coding retained_intron MGP_C57BL6NJ_T0080169.1 MGP_C57BL6NJ_G0031628.1 mouse_genomes_project 6 125106017 125116714 + Dcp1b protein_coding retained_intron MGP_C57BL6NJ_T0080170.1 MGP_C57BL6NJ_G0031628.1 mouse_genomes_project 6 125119410 125123481 + Dcp1b protein_coding retained_intron MGP_C57BL6NJ_T0080969.1 MGP_C57BL6NJ_G0031798.1 mouse_genomes_project 6 137094525 137157570 - MGP_C57BL6NJ_P0080969 Klra17 protein_coding protein_coding MGP_C57BL6NJ_T0080970.1 MGP_C57BL6NJ_G0031798.1 mouse_genomes_project 6 137094535 137157572 - MGP_C57BL6NJ_P0080970 Klra17 protein_coding protein_coding MGP_C57BL6NJ_T0076616.1 MGP_C57BL6NJ_G0030856.1 mouse_genomes_project 6 80436 85461 - MGP_C57BL6NJ_P0076616 Samd9l protein_coding protein_coding MGP_C57BL6NJ_T0076617.1 MGP_C57BL6NJ_G0030856.1 mouse_genomes_project 6 85129 92987 - MGP_C57BL6NJ_P0076617 Samd9l protein_coding protein_coding MGP_C57BL6NJ_T0078735.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86362207 86366911 + MGP_C57BL6NJ_P0078735 Pcgf1 protein_coding protein_coding MGP_C57BL6NJ_T0078736.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86362684 86368771 + MGP_C57BL6NJ_P0078736 Pcgf1 protein_coding protein_coding MGP_C57BL6NJ_T0078737.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86362728 86368763 + MGP_C57BL6NJ_P0078737 Pcgf1 protein_coding protein_coding MGP_C57BL6NJ_T0078738.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86362760 86368778 + MGP_C57BL6NJ_P0078738 Pcgf1 protein_coding protein_coding MGP_C57BL6NJ_T0078739.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86364033 86368673 + MGP_C57BL6NJ_P0078739 Pcgf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078740.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86364094 86368673 + MGP_C57BL6NJ_P0078740 Pcgf1 protein_coding protein_coding MGP_C57BL6NJ_T0078741.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86364121 86367626 + Pcgf1 protein_coding retained_intron MGP_C57BL6NJ_T0078742.1 MGP_C57BL6NJ_G0031354.1 mouse_genomes_project 6 86367935 86368770 + Pcgf1 protein_coding retained_intron MGP_C57BL6NJ_T0099506.1 MGP_C57BL6NJ_G0037559.1 mouse_genomes_project 6 142963680 142965974 - Gm44366 sense_intronic sense_intronic MGP_C57BL6NJ_T0077732.1 MGP_C57BL6NJ_G0031097.1 mouse_genomes_project 6 42295868 42296822 + MGP_C57BL6NJ_P0077732 Olfr453 protein_coding protein_coding MGP_C57BL6NJ_T0081035.1 MGP_C57BL6NJ_G0031840.1 mouse_genomes_project 6 140904991 140905991 - MGP_C57BL6NJ_P0081035 Tas2r140 protein_coding protein_coding MGP_C57BL6NJ_T0002209.1 MGP_C57BL6NJ_G0002100.1 mouse_genomes_project 6 92564072 92567245 + TEC TEC MGP_C57BL6NJ_T0077239.1 MGP_C57BL6NJ_G0030975.1 mouse_genomes_project 6 29204171 29214578 + MGP_C57BL6NJ_P0077239 Ssmem1 protein_coding protein_coding MGP_C57BL6NJ_T0077240.1 MGP_C57BL6NJ_G0030975.1 mouse_genomes_project 6 29206608 29214579 + MGP_C57BL6NJ_P0077240 Ssmem1 protein_coding protein_coding MGP_C57BL6NJ_T0077241.1 MGP_C57BL6NJ_G0030975.1 mouse_genomes_project 6 29208020 29213869 + MGP_C57BL6NJ_P0077241 Ssmem1 protein_coding protein_coding MGP_C57BL6NJ_T0015722.1 MGP_C57BL6NJ_G0013767.1 mouse_genomes_project 6 41009709 41010085 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080490.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131391119 131395448 - Emg1 protein_coding retained_intron MGP_C57BL6NJ_T0080491.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131391415 131399198 - MGP_C57BL6NJ_P0080491 Emg1 protein_coding protein_coding MGP_C57BL6NJ_T0080492.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131391416 131392694 - Emg1 protein_coding processed_transcript MGP_C57BL6NJ_T0080493.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131391492 131399089 - Emg1 protein_coding retained_intron MGP_C57BL6NJ_T0080494.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131391985 131399161 - Emg1 protein_coding retained_intron MGP_C57BL6NJ_T0080495.1 MGP_C57BL6NJ_G0031694.1 mouse_genomes_project 6 131392194 131399077 - MGP_C57BL6NJ_P0080495 Emg1 protein_coding protein_coding MGP_C57BL6NJ_T0015653.1 MGP_C57BL6NJ_G0013698.1 mouse_genomes_project 6 10935147 10935643 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000442.1 MGP_C57BL6NJ_G0000361.1 mouse_genomes_project 6 71569767 71790338 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0005286.1 MGP_C57BL6NJ_G0004505.1 mouse_genomes_project 6 154064748 154072476 + antisense antisense MGP_C57BL6NJ_T0015712.1 MGP_C57BL6NJ_G0013757.1 mouse_genomes_project 6 37618726 37619149 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079260.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92673372 92674535 - Podxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0079261.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92673581 92707306 - MGP_C57BL6NJ_P0079261 Podxl2 protein_coding protein_coding MGP_C57BL6NJ_T0079262.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92674352 92676737 - Podxl2 protein_coding retained_intron MGP_C57BL6NJ_T0079263.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92674990 92680189 - Podxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0079264.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92677779 92679655 - Podxl2 protein_coding retained_intron MGP_C57BL6NJ_T0079265.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92680490 92707065 - MGP_C57BL6NJ_P0079265 Podxl2 protein_coding protein_coding MGP_C57BL6NJ_T0079266.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92680490 92707123 - MGP_C57BL6NJ_P0079266 Podxl2 protein_coding protein_coding MGP_C57BL6NJ_T0079267.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92680625 92695786 - Podxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0079268.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92694795 92707316 - Podxl2 protein_coding retained_intron MGP_C57BL6NJ_T0079269.1 MGP_C57BL6NJ_G0031451.1 mouse_genomes_project 6 92695330 92706704 - Podxl2 protein_coding retained_intron MGP_C57BL6NJ_T0008915.1 MGP_C57BL6NJ_G0007208.1 mouse_genomes_project 6 135193404 135207511 - Gm10010 lincRNA lincRNA MGP_C57BL6NJ_T0100540.1 MGP_C57BL6NJ_G0038586.1 mouse_genomes_project 6 107607364 107607472 + Gm26022 snRNA snRNA MGP_C57BL6NJ_T0008951.1 MGP_C57BL6NJ_G0007229.1 mouse_genomes_project 6 152442441 152443985 - 4930579D09Rik lincRNA lincRNA MGP_C57BL6NJ_T0015835.1 MGP_C57BL6NJ_G0013880.1 mouse_genomes_project 6 69958736 69959136 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015892.1 MGP_C57BL6NJ_G0013937.1 mouse_genomes_project 6 89545931 89553454 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002253.1 MGP_C57BL6NJ_G0002144.1 mouse_genomes_project 6 113647026 113649247 - TEC TEC MGP_C57BL6NJ_T0078239.1 MGP_C57BL6NJ_G0031235.1 mouse_genomes_project 6 58177920 58179038 + MGP_C57BL6NJ_P0078239 Vmn1r19 protein_coding protein_coding MGP_C57BL6NJ_T0102300.1 MGP_C57BL6NJ_G0040272.1 mouse_genomes_project 6 104817427 104818459 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102301.1 MGP_C57BL6NJ_G0040272.1 mouse_genomes_project 6 104818330 104820544 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0002635.1 MGP_C57BL6NJ_G0002520.1 mouse_genomes_project 6 41070543 41072166 + MGP_C57BL6NJ_P0002635 Trbc2 TR_C_gene TR_C_gene MGP_C57BL6NJ_T0015686.1 MGP_C57BL6NJ_G0013731.1 mouse_genomes_project 6 21325991 21327657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016057.1 MGP_C57BL6NJ_G0014102.1 mouse_genomes_project 6 140087907 140088124 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079794.1 MGP_C57BL6NJ_G0031559.1 mouse_genomes_project 6 118899839 118912159 + MGP_C57BL6NJ_P0079794 Arpc4 protein_coding protein_coding MGP_C57BL6NJ_T0079795.1 MGP_C57BL6NJ_G0031559.1 mouse_genomes_project 6 118899932 118910495 + MGP_C57BL6NJ_P0079795 Arpc4 protein_coding protein_coding MGP_C57BL6NJ_T0002270.1 MGP_C57BL6NJ_G0002161.1 mouse_genomes_project 6 123731619 123734887 - TEC TEC MGP_C57BL6NJ_T0002271.1 MGP_C57BL6NJ_G0002161.1 mouse_genomes_project 6 123734218 123734888 - TEC TEC MGP_C57BL6NJ_T0078519.1 MGP_C57BL6NJ_G0031308.1 mouse_genomes_project 6 74764217 74774770 + MGP_C57BL6NJ_P0078519 Sftpb protein_coding protein_coding MGP_C57BL6NJ_T0078520.1 MGP_C57BL6NJ_G0031308.1 mouse_genomes_project 6 74764227 74774766 + MGP_C57BL6NJ_P0078520 Sftpb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078521.1 MGP_C57BL6NJ_G0031308.1 mouse_genomes_project 6 74764232 74773352 + MGP_C57BL6NJ_P0078521 Sftpb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078522.1 MGP_C57BL6NJ_G0031308.1 mouse_genomes_project 6 74764232 74773352 + MGP_C57BL6NJ_P0078522 Sftpb protein_coding protein_coding MGP_C57BL6NJ_T0078523.1 MGP_C57BL6NJ_G0031308.1 mouse_genomes_project 6 74766843 74774465 + Sftpb protein_coding retained_intron MGP_C57BL6NJ_T0081005.1 MGP_C57BL6NJ_G0031813.1 mouse_genomes_project 6 139290709 139291636 - MGP_C57BL6NJ_P0081005 Tas2r106 protein_coding protein_coding MGP_C57BL6NJ_T0081311.1 MGP_C57BL6NJ_G0031897.1 mouse_genomes_project 6 150383711 150446107 + MGP_C57BL6NJ_P0081311 Slco1b2 protein_coding protein_coding MGP_C57BL6NJ_T0081312.1 MGP_C57BL6NJ_G0031897.1 mouse_genomes_project 6 150388645 150445067 + MGP_C57BL6NJ_P0081312 Slco1b2 protein_coding protein_coding MGP_C57BL6NJ_T0081313.1 MGP_C57BL6NJ_G0031897.1 mouse_genomes_project 6 150410105 150414757 + Slco1b2 protein_coding retained_intron MGP_C57BL6NJ_T0081314.1 MGP_C57BL6NJ_G0031897.1 mouse_genomes_project 6 150440750 150445070 + Slco1b2 protein_coding retained_intron MGP_C57BL6NJ_T0002156.1 MGP_C57BL6NJ_G0002047.1 mouse_genomes_project 6 75735138 75737109 + TEC TEC MGP_C57BL6NJ_T0005217.1 MGP_C57BL6NJ_G0004447.1 mouse_genomes_project 6 117749088 117752294 - 5031434C07Rik antisense antisense MGP_C57BL6NJ_T0005218.1 MGP_C57BL6NJ_G0004447.1 mouse_genomes_project 6 117749314 117752295 - 5031434C07Rik antisense antisense MGP_C57BL6NJ_T0077709.1 MGP_C57BL6NJ_G0031086.1 mouse_genomes_project 6 41898436 41913426 - MGP_C57BL6NJ_P0077709 Epha1 protein_coding protein_coding MGP_C57BL6NJ_T0077710.1 MGP_C57BL6NJ_G0031086.1 mouse_genomes_project 6 41898665 41913426 - MGP_C57BL6NJ_P0077710 Epha1 protein_coding protein_coding MGP_C57BL6NJ_T0077711.1 MGP_C57BL6NJ_G0031086.1 mouse_genomes_project 6 41907198 41913393 - Epha1 protein_coding retained_intron MGP_C57BL6NJ_T0079128.1 MGP_C57BL6NJ_G0031425.1 mouse_genomes_project 6 91081205 91086498 - MGP_C57BL6NJ_P0079128 Gkn1 protein_coding protein_coding MGP_C57BL6NJ_T0080222.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899155 125902448 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080223.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899155 126026445 - MGP_C57BL6NJ_P0080223 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080224.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899157 126026428 - MGP_C57BL6NJ_P0080224 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080225.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899157 126026428 - MGP_C57BL6NJ_P0080225 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080226.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899807 126025432 - MGP_C57BL6NJ_P0080226 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080227.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125899807 126025432 - MGP_C57BL6NJ_P0080227 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080228.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125901765 125911626 - MGP_C57BL6NJ_P0080228 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080229.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125902311 125912826 - MGP_C57BL6NJ_P0080229 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080230.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125905019 125909505 - MGP_C57BL6NJ_P0080230 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080231.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125905019 125909506 - MGP_C57BL6NJ_P0080231 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080232.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125905958 125909013 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080233.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125912636 125925932 - MGP_C57BL6NJ_P0080233 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080234.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125912791 125925611 - MGP_C57BL6NJ_P0080234 Wnk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080235.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125912911 125915278 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080236.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125921834 125927660 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080237.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125927828 125929504 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080238.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125929156 125947882 - MGP_C57BL6NJ_P0080238 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080239.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125929163 125933676 - MGP_C57BL6NJ_P0080239 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080240.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125930374 125969386 - MGP_C57BL6NJ_P0080240 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080241.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125931155 126026380 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080242.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125931155 125969345 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0080243.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125933601 125940431 - MGP_C57BL6NJ_P0080243 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080244.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125939808 125941234 - MGP_C57BL6NJ_P0080244 Wnk1 protein_coding protein_coding MGP_C57BL6NJ_T0080245.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125948772 125971748 - Wnk1 protein_coding processed_transcript MGP_C57BL6NJ_T0080246.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125948783 125960667 - Wnk1 protein_coding processed_transcript MGP_C57BL6NJ_T0080247.1 MGP_C57BL6NJ_G0031636.1 mouse_genomes_project 6 125949965 125952283 - Wnk1 protein_coding retained_intron MGP_C57BL6NJ_T0002061.1 MGP_C57BL6NJ_G0001952.1 mouse_genomes_project 6 10411074 10412017 + TEC TEC MGP_C57BL6NJ_T0015707.1 MGP_C57BL6NJ_G0013752.1 mouse_genomes_project 6 36672168 36672715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002330.1 MGP_C57BL6NJ_G0002220.1 mouse_genomes_project 6 158095256 158096719 - TEC TEC MGP_C57BL6NJ_T0081023.1 MGP_C57BL6NJ_G0031828.1 mouse_genomes_project 6 140566236 140567280 + MGP_C57BL6NJ_P0081023 Tas2r102 protein_coding protein_coding MGP_C57BL6NJ_T0005792.1 MGP_C57BL6NJ_G0004873.1 mouse_genomes_project 6 120730110 120737346 - Gm17733 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0099500.1 MGP_C57BL6NJ_G0037553.1 mouse_genomes_project 6 103879963 103883856 - Gm20705 sense_intronic sense_intronic MGP_C57BL6NJ_T0080130.1 MGP_C57BL6NJ_G0031623.1 mouse_genomes_project 6 124245036 124286988 - MGP_C57BL6NJ_P0080130 Bms1 protein_coding protein_coding MGP_C57BL6NJ_T0080131.1 MGP_C57BL6NJ_G0031623.1 mouse_genomes_project 6 124257855 124286918 - Bms1 protein_coding retained_intron MGP_C57BL6NJ_T0080132.1 MGP_C57BL6NJ_G0031623.1 mouse_genomes_project 6 124281347 124286926 - Bms1 protein_coding processed_transcript MGP_C57BL6NJ_T0101775.1 MGP_C57BL6NJ_G0039821.1 mouse_genomes_project 6 10624549 10624678 + Gm24985 snoRNA snoRNA MGP_C57BL6NJ_T0016067.1 MGP_C57BL6NJ_G0014112.1 mouse_genomes_project 6 140943975 140944624 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000242.1 MGP_C57BL6NJ_G0000180.1 mouse_genomes_project 6 70924807 70925344 - MGP_C57BL6NJ_P0000242 Igkv4-81 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000243.1 MGP_C57BL6NJ_G0000180.1 mouse_genomes_project 6 70924809 70925099 - MGP_C57BL6NJ_P0000243 Igkv4-81 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002189.1 MGP_C57BL6NJ_G0002080.1 mouse_genomes_project 6 90277256 90279421 + TEC TEC MGP_C57BL6NJ_T0080811.1 MGP_C57BL6NJ_G0031754.1 mouse_genomes_project 6 135236385 135239153 - MGP_C57BL6NJ_P0080811 protein_coding protein_coding MGP_C57BL6NJ_T0011026.1 MGP_C57BL6NJ_G0009111.1 mouse_genomes_project 6 72275485 72275595 - Gm24096 miRNA miRNA MGP_C57BL6NJ_T0078039.1 MGP_C57BL6NJ_G0031179.1 mouse_genomes_project 6 52566021 52568088 - MGP_C57BL6NJ_P0078039 protein_coding protein_coding MGP_C57BL6NJ_T0002046.1 MGP_C57BL6NJ_G0001937.1 mouse_genomes_project 6 14611 16725 - TEC TEC MGP_C57BL6NJ_T0103311.1 MGP_C57BL6NJ_G0041104.1 mouse_genomes_project 6 141342082 141343718 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002236.1 MGP_C57BL6NJ_G0002127.1 mouse_genomes_project 6 104708990 104709382 - TEC TEC MGP_C57BL6NJ_T0015802.1 MGP_C57BL6NJ_G0013847.1 mouse_genomes_project 6 66688365 66688699 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005244.1 MGP_C57BL6NJ_G0004470.1 mouse_genomes_project 6 131710538 131753534 - Gm43989 antisense antisense MGP_C57BL6NJ_T0080651.1 MGP_C57BL6NJ_G0031718.1 mouse_genomes_project 6 131775045 131789598 + MGP_C57BL6NJ_P0080651 Lpar5 protein_coding protein_coding MGP_C57BL6NJ_T0080652.1 MGP_C57BL6NJ_G0031718.1 mouse_genomes_project 6 131778402 131788934 + MGP_C57BL6NJ_P0080652 Lpar5 protein_coding protein_coding MGP_C57BL6NJ_T0080653.1 MGP_C57BL6NJ_G0031718.1 mouse_genomes_project 6 131778402 131789598 + MGP_C57BL6NJ_P0080653 Lpar5 protein_coding protein_coding MGP_C57BL6NJ_T0101834.1 MGP_C57BL6NJ_G0039880.1 mouse_genomes_project 6 130865116 130865248 - Gm25311 snoRNA snoRNA MGP_C57BL6NJ_T0005181.1 MGP_C57BL6NJ_G0004424.1 mouse_genomes_project 6 91475375 91476560 - Gm44210 antisense antisense MGP_C57BL6NJ_T0015928.1 MGP_C57BL6NJ_G0013973.1 mouse_genomes_project 6 107437675 107438591 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078035.1 MGP_C57BL6NJ_G0031177.1 mouse_genomes_project 6 52542035 52590559 - MGP_C57BL6NJ_P0078035 Hoxa3 protein_coding protein_coding MGP_C57BL6NJ_T0078036.1 MGP_C57BL6NJ_G0031177.1 mouse_genomes_project 6 52545572 52560224 - MGP_C57BL6NJ_P0078036 Hoxa3 protein_coding protein_coding MGP_C57BL6NJ_T0078038.1 MGP_C57BL6NJ_G0031177.1 mouse_genomes_project 6 52554828 52561243 - Hoxa3 protein_coding processed_transcript MGP_C57BL6NJ_T0078040.1 MGP_C57BL6NJ_G0031177.1 mouse_genomes_project 6 52576612 52590780 - Hoxa3 protein_coding retained_intron MGP_C57BL6NJ_T0077809.1 MGP_C57BL6NJ_G0031124.1 mouse_genomes_project 6 47849541 47865252 + MGP_C57BL6NJ_P0077809 Zfp212 protein_coding protein_coding MGP_C57BL6NJ_T0077810.1 MGP_C57BL6NJ_G0031124.1 mouse_genomes_project 6 47855371 47856212 + Zfp212 protein_coding retained_intron MGP_C57BL6NJ_T0015703.1 MGP_C57BL6NJ_G0013748.1 mouse_genomes_project 6 33745590 33746286 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076913.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 15942837 16105452 + MGP_C57BL6NJ_P0076913 Cftr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076914.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 15942837 16105453 + MGP_C57BL6NJ_P0076914 Cftr protein_coding protein_coding MGP_C57BL6NJ_T0076915.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 15942837 16105452 + MGP_C57BL6NJ_P0076915 Cftr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076916.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 15942921 16013776 + MGP_C57BL6NJ_P0076916 Cftr protein_coding protein_coding MGP_C57BL6NJ_T0076917.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 15942974 16103718 + MGP_C57BL6NJ_P0076917 Cftr protein_coding protein_coding MGP_C57BL6NJ_T0076918.1 MGP_C57BL6NJ_G0030912.1 mouse_genomes_project 6 16035980 16047253 + Cftr protein_coding retained_intron MGP_C57BL6NJ_T0079896.1 MGP_C57BL6NJ_G0031578.1 mouse_genomes_project 6 119693017 119813697 + MGP_C57BL6NJ_P0079896 Slc6a11 protein_coding protein_coding MGP_C57BL6NJ_T0079897.1 MGP_C57BL6NJ_G0031578.1 mouse_genomes_project 6 119693195 119694212 + Slc6a11 protein_coding retained_intron MGP_C57BL6NJ_T0080063.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152331 122202494 - MGP_C57BL6NJ_P0080063 Alox5 protein_coding protein_coding MGP_C57BL6NJ_T0080064.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152528 122202447 - Alox5 protein_coding retained_intron MGP_C57BL6NJ_T0080065.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152530 122155045 - Alox5 protein_coding retained_intron MGP_C57BL6NJ_T0080066.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152861 122202340 - MGP_C57BL6NJ_P0080066 Alox5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080067.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152973 122202340 - MGP_C57BL6NJ_P0080067 Alox5 protein_coding protein_coding MGP_C57BL6NJ_T0080068.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122152973 122202340 - MGP_C57BL6NJ_P0080068 Alox5 protein_coding protein_coding MGP_C57BL6NJ_T0080069.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122154843 122156273 - Alox5 protein_coding retained_intron MGP_C57BL6NJ_T0080070.1 MGP_C57BL6NJ_G0031606.1 mouse_genomes_project 6 122157722 122167016 - Alox5 protein_coding processed_transcript MGP_C57BL6NJ_T0101816.1 MGP_C57BL6NJ_G0039862.1 mouse_genomes_project 6 101919948 101920078 - Gm25852 snoRNA snoRNA MGP_C57BL6NJ_T0078237.1 MGP_C57BL6NJ_G0031233.1 mouse_genomes_project 6 58134324 58135304 - MGP_C57BL6NJ_P0078237 Vmn1r17 protein_coding protein_coding MGP_C57BL6NJ_T0078527.1 MGP_C57BL6NJ_G0031310.1 mouse_genomes_project 6 74808642 74812542 + 0610030E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0078528.1 MGP_C57BL6NJ_G0031310.1 mouse_genomes_project 6 74808651 74810501 + 0610030E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0078529.1 MGP_C57BL6NJ_G0031310.1 mouse_genomes_project 6 74808659 74814440 + MGP_C57BL6NJ_P0078529 0610030E20Rik protein_coding protein_coding MGP_C57BL6NJ_T0078530.1 MGP_C57BL6NJ_G0031310.1 mouse_genomes_project 6 74808692 74811943 + 0610030E20Rik protein_coding retained_intron MGP_C57BL6NJ_T0002216.1 MGP_C57BL6NJ_G0002107.1 mouse_genomes_project 6 94338667 94341218 + TEC TEC MGP_C57BL6NJ_T0102534.1 MGP_C57BL6NJ_G0040383.1 mouse_genomes_project 6 137385023 137723818 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102535.1 MGP_C57BL6NJ_G0040383.1 mouse_genomes_project 6 137385023 137723818 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102536.1 MGP_C57BL6NJ_G0040383.1 mouse_genomes_project 6 137385035 137723817 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0011937.1 MGP_C57BL6NJ_G0010022.1 mouse_genomes_project 6 150701077 150701292 - Gm22036 misc_RNA misc_RNA MGP_C57BL6NJ_T0002119.1 MGP_C57BL6NJ_G0002010.1 mouse_genomes_project 6 46702585 46706335 + TEC TEC MGP_C57BL6NJ_T0015879.1 MGP_C57BL6NJ_G0013924.1 mouse_genomes_project 6 87229802 87230568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002256.1 MGP_C57BL6NJ_G0002147.1 mouse_genomes_project 6 117756688 117759211 + TEC TEC MGP_C57BL6NJ_T0008904.1 MGP_C57BL6NJ_G0007197.1 mouse_genomes_project 6 128757511 128758820 + 1700063H04Rik lincRNA lincRNA MGP_C57BL6NJ_T0079117.1 MGP_C57BL6NJ_G0031423.1 mouse_genomes_project 6 90829933 90838619 + MGP_C57BL6NJ_P0079117 D6Ertd527e protein_coding protein_coding MGP_C57BL6NJ_T0079118.1 MGP_C57BL6NJ_G0031423.1 mouse_genomes_project 6 90829935 90838676 + MGP_C57BL6NJ_P0079118 D6Ertd527e protein_coding protein_coding MGP_C57BL6NJ_T0079119.1 MGP_C57BL6NJ_G0031423.1 mouse_genomes_project 6 90829935 90838675 + MGP_C57BL6NJ_P0079119 D6Ertd527e protein_coding protein_coding MGP_C57BL6NJ_T0079120.1 MGP_C57BL6NJ_G0031423.1 mouse_genomes_project 6 90829969 90836849 + D6Ertd527e protein_coding processed_transcript MGP_C57BL6NJ_T0079121.1 MGP_C57BL6NJ_G0031423.1 mouse_genomes_project 6 90830000 90836841 + D6Ertd527e protein_coding processed_transcript MGP_C57BL6NJ_T0002049.1 MGP_C57BL6NJ_G0001940.1 mouse_genomes_project 6 1396851 1399669 - TEC TEC MGP_C57BL6NJ_T0077847.1 MGP_C57BL6NJ_G0031131.1 mouse_genomes_project 6 48604161 48608348 + MGP_C57BL6NJ_P0077847 Atp6v0e2 protein_coding protein_coding MGP_C57BL6NJ_T0077848.1 MGP_C57BL6NJ_G0031131.1 mouse_genomes_project 6 48604184 48606410 + Atp6v0e2 protein_coding retained_intron MGP_C57BL6NJ_T0077849.1 MGP_C57BL6NJ_G0031131.1 mouse_genomes_project 6 48604211 48608348 + MGP_C57BL6NJ_P0077849 Atp6v0e2 protein_coding protein_coding MGP_C57BL6NJ_T0103245.1 MGP_C57BL6NJ_G0041039.1 mouse_genomes_project 6 42763651 42763958 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100531.1 MGP_C57BL6NJ_G0038577.1 mouse_genomes_project 6 81882643 81882807 + Gm23727 snRNA snRNA MGP_C57BL6NJ_T0015831.1 MGP_C57BL6NJ_G0013876.1 mouse_genomes_project 6 69367340 69368694 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078096.1 MGP_C57BL6NJ_G0031192.1 mouse_genomes_project 6 54326714 54332077 - MGP_C57BL6NJ_P0078096 Tril protein_coding protein_coding MGP_C57BL6NJ_T0079741.1 MGP_C57BL6NJ_G0031552.1 mouse_genomes_project 6 118665408 118697236 - MGP_C57BL6NJ_P0079741 Lhfpl4 protein_coding protein_coding MGP_C57BL6NJ_T0079742.1 MGP_C57BL6NJ_G0031552.1 mouse_genomes_project 6 118674447 118694494 - MGP_C57BL6NJ_P0079742 Lhfpl4 protein_coding protein_coding MGP_C57BL6NJ_T0016104.1 MGP_C57BL6NJ_G0014149.1 mouse_genomes_project 6 158595824 158596269 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079898.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119848285 119884586 + MGP_C57BL6NJ_P0079898 Slc6a1 protein_coding protein_coding MGP_C57BL6NJ_T0079899.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119848340 119874156 + Slc6a1 protein_coding retained_intron MGP_C57BL6NJ_T0079900.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119848340 119879534 + Slc6a1 protein_coding retained_intron MGP_C57BL6NJ_T0079901.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119867056 119868985 + Slc6a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079902.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119868277 119868985 + Slc6a1 protein_coding retained_intron MGP_C57BL6NJ_T0079903.1 MGP_C57BL6NJ_G0031579.1 mouse_genomes_project 6 119880290 119882658 + Slc6a1 protein_coding retained_intron MGP_C57BL6NJ_T0103279.1 MGP_C57BL6NJ_G0041073.1 mouse_genomes_project 6 94068534 94079094 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000439.1 MGP_C57BL6NJ_G0000358.1 mouse_genomes_project 6 71380956 71381419 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0002070.1 MGP_C57BL6NJ_G0001961.1 mouse_genomes_project 6 19280017 19287785 + TEC TEC MGP_C57BL6NJ_T0081159.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145151703 145169920 - MGP_C57BL6NJ_P0081159 Wbp11 protein_coding protein_coding MGP_C57BL6NJ_T0081160.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145157357 145161621 - MGP_C57BL6NJ_P0081160 Wbp11 protein_coding protein_coding MGP_C57BL6NJ_T0081161.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145157582 145169823 - MGP_C57BL6NJ_P0081161 Wbp11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081162.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145160134 145169830 - Wbp11 protein_coding retained_intron MGP_C57BL6NJ_T0081163.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145164562 145169822 - Wbp11 protein_coding retained_intron MGP_C57BL6NJ_T0081164.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145165314 145166303 - Wbp11 protein_coding retained_intron MGP_C57BL6NJ_T0081165.1 MGP_C57BL6NJ_G0031870.1 mouse_genomes_project 6 145165723 145169423 - MGP_C57BL6NJ_P0081165 Wbp11 protein_coding protein_coding MGP_C57BL6NJ_T0076824.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12452021 13023622 + MGP_C57BL6NJ_P0076824 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076825.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12452060 12992758 + Foxp2 protein_coding retained_intron MGP_C57BL6NJ_T0076826.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12452123 12539842 + Foxp2 protein_coding processed_transcript MGP_C57BL6NJ_T0076827.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12452149 12859464 + MGP_C57BL6NJ_P0076827 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076828.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12452150 12860446 + Foxp2 protein_coding retained_intron MGP_C57BL6NJ_T0076829.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12454129 12758149 + Foxp2 protein_coding processed_transcript MGP_C57BL6NJ_T0076830.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12745908 12760575 + MGP_C57BL6NJ_P0076830 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076831.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12746690 13019949 + MGP_C57BL6NJ_P0076831 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076832.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12746690 13022846 + MGP_C57BL6NJ_P0076832 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076833.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12746690 13019668 + MGP_C57BL6NJ_P0076833 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076834.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12746747 12975651 + MGP_C57BL6NJ_P0076834 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076835.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12758138 12978679 + Foxp2 protein_coding retained_intron MGP_C57BL6NJ_T0076836.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12758140 12986495 + MGP_C57BL6NJ_P0076836 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076837.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12758140 12956657 + MGP_C57BL6NJ_P0076837 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076838.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12758153 12986495 + MGP_C57BL6NJ_P0076838 Foxp2 protein_coding protein_coding MGP_C57BL6NJ_T0076839.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12820280 12859464 + Foxp2 protein_coding processed_transcript MGP_C57BL6NJ_T0076840.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12898019 12899197 + Foxp2 protein_coding retained_intron MGP_C57BL6NJ_T0076841.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12953526 12954926 + Foxp2 protein_coding processed_transcript MGP_C57BL6NJ_T0076842.1 MGP_C57BL6NJ_G0030901.1 mouse_genomes_project 6 12953526 13020693 + MGP_C57BL6NJ_P0076842 Foxp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076742.1 MGP_C57BL6NJ_G0030883.1 mouse_genomes_project 6 5051466 5256761 - MGP_C57BL6NJ_P0076742 Col28a1 protein_coding protein_coding MGP_C57BL6NJ_T0076743.1 MGP_C57BL6NJ_G0030883.1 mouse_genomes_project 6 5076651 5078128 - Col28a1 protein_coding processed_transcript MGP_C57BL6NJ_T0076744.1 MGP_C57BL6NJ_G0030883.1 mouse_genomes_project 6 5131025 5135828 - Col28a1 protein_coding retained_intron MGP_C57BL6NJ_T0000408.1 MGP_C57BL6NJ_G0000327.1 mouse_genomes_project 6 69996273 69997037 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0103253.1 MGP_C57BL6NJ_G0041047.1 mouse_genomes_project 6 58898693 58899606 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081303.1 MGP_C57BL6NJ_G0031894.1 mouse_genomes_project 6 149418985 149468320 + MGP_C57BL6NJ_P0081303 Gm11077 protein_coding protein_coding MGP_C57BL6NJ_T0079316.1 MGP_C57BL6NJ_G0031461.1 mouse_genomes_project 6 93791280 93801134 + MGP_C57BL6NJ_P0079316 Vmn1r44 protein_coding protein_coding MGP_C57BL6NJ_T0079317.1 MGP_C57BL6NJ_G0031461.1 mouse_genomes_project 6 93800826 93801934 + MGP_C57BL6NJ_P0079317 Vmn1r44 protein_coding protein_coding MGP_C57BL6NJ_T0016036.1 MGP_C57BL6NJ_G0014081.1 mouse_genomes_project 6 137466128 137466282 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002813.1 MGP_C57BL6NJ_G0002677.1 mouse_genomes_project 6 40526087 40526580 + MGP_C57BL6NJ_P0002813 Trbv4 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002103.1 MGP_C57BL6NJ_G0001994.1 mouse_genomes_project 6 45053956 45056754 + TEC TEC MGP_C57BL6NJ_T0015666.1 MGP_C57BL6NJ_G0013711.1 mouse_genomes_project 6 16615943 16616207 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079006.1 MGP_C57BL6NJ_G0031405.1 mouse_genomes_project 6 89653208 89657823 + Figla protein_coding processed_transcript MGP_C57BL6NJ_T0079007.1 MGP_C57BL6NJ_G0031405.1 mouse_genomes_project 6 89654228 89658033 + MGP_C57BL6NJ_P0079007 Figla protein_coding protein_coding MGP_C57BL6NJ_T0076725.1 MGP_C57BL6NJ_G0030878.1 mouse_genomes_project 6 3887324 3891597 - MGP_C57BL6NJ_P0076725 Dlx5 protein_coding protein_coding MGP_C57BL6NJ_T0076726.1 MGP_C57BL6NJ_G0030878.1 mouse_genomes_project 6 3887324 3891580 - MGP_C57BL6NJ_P0076726 Dlx5 protein_coding protein_coding MGP_C57BL6NJ_T0076727.1 MGP_C57BL6NJ_G0030878.1 mouse_genomes_project 6 3890203 3891594 - Dlx5 protein_coding retained_intron MGP_C57BL6NJ_T0002225.1 MGP_C57BL6NJ_G0002116.1 mouse_genomes_project 6 95918191 95919197 - TEC TEC MGP_C57BL6NJ_T0102528.1 MGP_C57BL6NJ_G0040380.1 mouse_genomes_project 6 136124907 136139987 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102529.1 MGP_C57BL6NJ_G0040380.1 mouse_genomes_project 6 136124995 136139908 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0000423.1 MGP_C57BL6NJ_G0000342.1 mouse_genomes_project 6 70901010 70901640 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078241.1 MGP_C57BL6NJ_G0031237.1 mouse_genomes_project 6 58207062 58207974 + MGP_C57BL6NJ_P0078241 protein_coding protein_coding MGP_C57BL6NJ_T0101783.1 MGP_C57BL6NJ_G0039829.1 mouse_genomes_project 6 34979198 34979333 + Gm23273 snoRNA snoRNA MGP_C57BL6NJ_T0077472.1 MGP_C57BL6NJ_G0031018.1 mouse_genomes_project 6 37302403 37309898 + MGP_C57BL6NJ_P0077472 Tmem213 protein_coding protein_coding MGP_C57BL6NJ_T0000443.1 MGP_C57BL6NJ_G0000362.1 mouse_genomes_project 6 71629157 71629580 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0002712.1 MGP_C57BL6NJ_G0002590.1 mouse_genomes_project 6 41064870 41064919 + MGP_C57BL6NJ_P0002712 Trbj2-3 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0010998.1 MGP_C57BL6NJ_G0009083.1 mouse_genomes_project 6 16256108 16256178 - Gm26233 miRNA miRNA MGP_C57BL6NJ_T0011005.1 MGP_C57BL6NJ_G0009090.1 mouse_genomes_project 6 28829289 28829364 - Mir182 miRNA miRNA MGP_C57BL6NJ_T0015910.1 MGP_C57BL6NJ_G0013955.1 mouse_genomes_project 6 99051602 99052038 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015911.1 MGP_C57BL6NJ_G0013956.1 mouse_genomes_project 6 99456148 99456499 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081320.1 MGP_C57BL6NJ_G0031900.1 mouse_genomes_project 6 150693281 150734286 - MGP_C57BL6NJ_P0081320 Slco1a1 protein_coding protein_coding MGP_C57BL6NJ_T0081321.1 MGP_C57BL6NJ_G0031900.1 mouse_genomes_project 6 150693852 150734438 - MGP_C57BL6NJ_P0081321 Slco1a1 protein_coding protein_coding MGP_C57BL6NJ_T0081322.1 MGP_C57BL6NJ_G0031900.1 mouse_genomes_project 6 150708685 150734292 - Slco1a1 protein_coding retained_intron MGP_C57BL6NJ_T0079528.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101525129 101549577 - MGP_C57BL6NJ_P0079528 Uba3 protein_coding protein_coding MGP_C57BL6NJ_T0079529.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101525277 101549576 - MGP_C57BL6NJ_P0079529 Uba3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079530.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101525466 101549664 - MGP_C57BL6NJ_P0079530 Uba3 protein_coding protein_coding MGP_C57BL6NJ_T0079531.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101537842 101540022 - Uba3 protein_coding retained_intron MGP_C57BL6NJ_T0079532.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101547030 101549582 - Uba3 protein_coding retained_intron MGP_C57BL6NJ_T0079533.1 MGP_C57BL6NJ_G0031513.1 mouse_genomes_project 6 101548107 101549585 - Uba3 protein_coding retained_intron MGP_C57BL6NJ_T0077415.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 33977367 33981608 - Cnot4 protein_coding retained_intron MGP_C57BL6NJ_T0077416.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 33977367 34093832 - MGP_C57BL6NJ_P0077416 Cnot4 protein_coding protein_coding MGP_C57BL6NJ_T0077417.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 33977368 34093901 - MGP_C57BL6NJ_P0077417 Cnot4 protein_coding protein_coding MGP_C57BL6NJ_T0077418.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 33977373 34093896 - MGP_C57BL6NJ_P0077418 Cnot4 protein_coding protein_coding MGP_C57BL6NJ_T0077419.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 34004147 34093922 - MGP_C57BL6NJ_P0077419 Cnot4 protein_coding protein_coding MGP_C57BL6NJ_T0077420.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 34004188 34093931 - MGP_C57BL6NJ_P0077420 Cnot4 protein_coding protein_coding MGP_C57BL6NJ_T0077421.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 34011575 34015516 - Cnot4 protein_coding retained_intron MGP_C57BL6NJ_T0077422.1 MGP_C57BL6NJ_G0031005.1 mouse_genomes_project 6 34012006 34093894 - Cnot4 protein_coding processed_transcript MGP_C57BL6NJ_T0015798.1 MGP_C57BL6NJ_G0013843.1 mouse_genomes_project 6 66576526 66576755 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002296.1 MGP_C57BL6NJ_G0002186.1 mouse_genomes_project 6 140962350 140964178 + TEC TEC MGP_C57BL6NJ_T0018758.1 MGP_C57BL6NJ_G0016034.1 mouse_genomes_project 6 99471646 99549689 - AY512915 processed_transcript antisense MGP_C57BL6NJ_T0018759.1 MGP_C57BL6NJ_G0016034.1 mouse_genomes_project 6 99492574 99549676 - AY512915 processed_transcript antisense MGP_C57BL6NJ_T0018760.1 MGP_C57BL6NJ_G0016034.1 mouse_genomes_project 6 99506455 99549691 - AY512915 processed_transcript lincRNA MGP_C57BL6NJ_T0018761.1 MGP_C57BL6NJ_G0016034.1 mouse_genomes_project 6 99527718 99549669 - AY512915 processed_transcript antisense MGP_C57BL6NJ_T0018762.1 MGP_C57BL6NJ_G0016034.1 mouse_genomes_project 6 99541920 99549675 - AY512915 processed_transcript processed_transcript MGP_C57BL6NJ_T0103304.1 MGP_C57BL6NJ_G0041097.1 mouse_genomes_project 6 140631064 140631965 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100549.1 MGP_C57BL6NJ_G0038595.1 mouse_genomes_project 6 126416834 126416940 - Gm24592 snRNA snRNA MGP_C57BL6NJ_T0077863.1 MGP_C57BL6NJ_G0031135.1 mouse_genomes_project 6 48657875 48681616 + MGP_C57BL6NJ_P0077863 Gm45021 protein_coding protein_coding MGP_C57BL6NJ_T0002083.1 MGP_C57BL6NJ_G0001974.1 mouse_genomes_project 6 29835227 29837321 - TEC TEC MGP_C57BL6NJ_T0078916.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88076433 88560674 - MGP_C57BL6NJ_P0078916 Exoc6b protein_coding protein_coding MGP_C57BL6NJ_T0078917.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88284383 88560674 - Exoc6b protein_coding retained_intron MGP_C57BL6NJ_T0078918.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88285255 88560618 - Exoc6b protein_coding retained_intron MGP_C57BL6NJ_T0078919.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88304668 88560663 - MGP_C57BL6NJ_P0078919 Exoc6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078920.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88345882 88349869 - Exoc6b protein_coding retained_intron MGP_C57BL6NJ_T0078921.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88404679 88560663 - Exoc6b protein_coding processed_transcript MGP_C57BL6NJ_T0078922.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88446907 88560629 - Exoc6b protein_coding retained_intron MGP_C57BL6NJ_T0078923.1 MGP_C57BL6NJ_G0031385.1 mouse_genomes_project 6 88470827 88560636 - Exoc6b protein_coding retained_intron MGP_C57BL6NJ_T0101780.1 MGP_C57BL6NJ_G0039826.1 mouse_genomes_project 6 23496286 23496409 - Gm22529 snoRNA snoRNA MGP_C57BL6NJ_T0016082.1 MGP_C57BL6NJ_G0014127.1 mouse_genomes_project 6 148668706 148669895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078349.1 MGP_C57BL6NJ_G0031267.1 mouse_genomes_project 6 66820726 66893441 + MGP_C57BL6NJ_P0078349 C130060K24Rik protein_coding protein_coding MGP_C57BL6NJ_T0078350.1 MGP_C57BL6NJ_G0031267.1 mouse_genomes_project 6 66820915 66898626 + MGP_C57BL6NJ_P0078350 C130060K24Rik protein_coding protein_coding MGP_C57BL6NJ_T0078351.1 MGP_C57BL6NJ_G0031267.1 mouse_genomes_project 6 66879788 66893469 + MGP_C57BL6NJ_P0078351 C130060K24Rik protein_coding protein_coding MGP_C57BL6NJ_T0078149.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55582900 55594632 - MGP_C57BL6NJ_P0078149 Ggct protein_coding protein_coding MGP_C57BL6NJ_T0078150.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55585968 55594389 - Ggct protein_coding processed_transcript MGP_C57BL6NJ_T0078151.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55586252 55594543 - MGP_C57BL6NJ_P0078151 Ggct protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078152.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55586276 55594545 - MGP_C57BL6NJ_P0078152 Ggct protein_coding protein_coding MGP_C57BL6NJ_T0078153.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55586801 55594545 - Ggct protein_coding retained_intron MGP_C57BL6NJ_T0078154.1 MGP_C57BL6NJ_G0031203.1 mouse_genomes_project 6 55590815 55594306 - Ggct protein_coding retained_intron MGP_C57BL6NJ_T0076961.1 MGP_C57BL6NJ_G0030921.1 mouse_genomes_project 6 20404690 20456196 - MGP_C57BL6NJ_P0076961 Fam3c protein_coding protein_coding MGP_C57BL6NJ_T0076962.1 MGP_C57BL6NJ_G0030921.1 mouse_genomes_project 6 20406040 20456124 - MGP_C57BL6NJ_P0076962 Fam3c protein_coding protein_coding MGP_C57BL6NJ_T0076963.1 MGP_C57BL6NJ_G0030921.1 mouse_genomes_project 6 20406618 20427579 - Fam3c protein_coding processed_transcript MGP_C57BL6NJ_T0076964.1 MGP_C57BL6NJ_G0030921.1 mouse_genomes_project 6 20407485 20456099 - MGP_C57BL6NJ_P0076964 Fam3c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076965.1 MGP_C57BL6NJ_G0030921.1 mouse_genomes_project 6 20420419 20443939 - MGP_C57BL6NJ_P0076965 Fam3c protein_coding protein_coding MGP_C57BL6NJ_T0100519.1 MGP_C57BL6NJ_G0038565.1 mouse_genomes_project 6 41129433 41129495 - Gm27549 snRNA snRNA MGP_C57BL6NJ_T0103243.1 MGP_C57BL6NJ_G0041037.1 mouse_genomes_project 6 42717409 42717725 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000261.1 MGP_C57BL6NJ_G0000196.1 mouse_genomes_project 6 71966604 71967069 - MGP_C57BL6NJ_P0000261 Igkv12-41 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011038.1 MGP_C57BL6NJ_G0009123.1 mouse_genomes_project 6 91744711 91744839 - miRNA miRNA MGP_C57BL6NJ_T0079139.1 MGP_C57BL6NJ_G0031431.1 mouse_genomes_project 6 91367119 91414419 - MGP_C57BL6NJ_P0079139 Aplf protein_coding protein_coding MGP_C57BL6NJ_T0079140.1 MGP_C57BL6NJ_G0031431.1 mouse_genomes_project 6 91369460 91414336 - MGP_C57BL6NJ_P0079140 Aplf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079141.1 MGP_C57BL6NJ_G0031431.1 mouse_genomes_project 6 91369465 91414465 - MGP_C57BL6NJ_P0079141 Aplf protein_coding protein_coding MGP_C57BL6NJ_T0079142.1 MGP_C57BL6NJ_G0031431.1 mouse_genomes_project 6 91390807 91414401 - Aplf protein_coding retained_intron MGP_C57BL6NJ_T0005789.1 MGP_C57BL6NJ_G0004872.1 mouse_genomes_project 6 91414653 91421558 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005790.1 MGP_C57BL6NJ_G0004872.1 mouse_genomes_project 6 91414701 91423296 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005791.1 MGP_C57BL6NJ_G0004872.1 mouse_genomes_project 6 91414701 91422509 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0078311.1 MGP_C57BL6NJ_G0031261.1 mouse_genomes_project 6 62056397 62080506 + Mmrn1 protein_coding retained_intron MGP_C57BL6NJ_T0078312.1 MGP_C57BL6NJ_G0031261.1 mouse_genomes_project 6 62078863 62126589 + MGP_C57BL6NJ_P0078312 Mmrn1 protein_coding protein_coding MGP_C57BL6NJ_T0078313.1 MGP_C57BL6NJ_G0031261.1 mouse_genomes_project 6 62078865 62126589 + MGP_C57BL6NJ_P0078313 Mmrn1 protein_coding protein_coding MGP_C57BL6NJ_T0103282.1 MGP_C57BL6NJ_G0041076.1 mouse_genomes_project 6 130451311 130458164 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002223.1 MGP_C57BL6NJ_G0002114.1 mouse_genomes_project 6 95738556 95740386 + TEC TEC MGP_C57BL6NJ_T0008695.1 MGP_C57BL6NJ_G0007040.1 mouse_genomes_project 6 14200264 14241614 + Gm43998 lincRNA lincRNA MGP_C57BL6NJ_T0000197.1 MGP_C57BL6NJ_G0000146.1 mouse_genomes_project 6 69169001 69169721 + MGP_C57BL6NJ_P0000197 Igkv2-137 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0078053.1 MGP_C57BL6NJ_G0031184.1 mouse_genomes_project 6 52608665 52612408 - MGP_C57BL6NJ_P0078053 Hoxa10 protein_coding protein_coding MGP_C57BL6NJ_T0078054.1 MGP_C57BL6NJ_G0031184.1 mouse_genomes_project 6 52608667 52610793 - Hoxa10 protein_coding processed_transcript MGP_C57BL6NJ_T0078055.1 MGP_C57BL6NJ_G0031184.1 mouse_genomes_project 6 52609390 52618323 - MGP_C57BL6NJ_P0078055 Hoxa10 protein_coding protein_coding MGP_C57BL6NJ_T0078056.1 MGP_C57BL6NJ_G0031184.1 mouse_genomes_project 6 52609550 52618264 - Hoxa10 protein_coding processed_transcript MGP_C57BL6NJ_T0015955.1 MGP_C57BL6NJ_G0014000.1 mouse_genomes_project 6 118473097 118473572 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002136.1 MGP_C57BL6NJ_G0002027.1 mouse_genomes_project 6 59894283 59896378 + TEC TEC MGP_C57BL6NJ_T0015698.1 MGP_C57BL6NJ_G0013743.1 mouse_genomes_project 6 29868375 29871664 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100513.1 MGP_C57BL6NJ_G0038559.1 mouse_genomes_project 6 28589513 28589620 + Gm24536 snRNA snRNA MGP_C57BL6NJ_T0103297.1 MGP_C57BL6NJ_G0041090.1 mouse_genomes_project 6 138579387 138581878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005255.1 MGP_C57BL6NJ_G0004479.1 mouse_genomes_project 6 135392560 135396944 + Gm26770 antisense antisense MGP_C57BL6NJ_T0015701.1 MGP_C57BL6NJ_G0013746.1 mouse_genomes_project 6 32207706 32210020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077398.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33809125 33840623 - MGP_C57BL6NJ_P0077398 Wdr91 protein_coding protein_coding MGP_C57BL6NJ_T0077399.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33809125 33840623 - MGP_C57BL6NJ_P0077399 Wdr91 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077400.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33834413 33840342 - MGP_C57BL6NJ_P0077400 Wdr91 protein_coding protein_coding MGP_C57BL6NJ_T0077401.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33836409 33840409 - MGP_C57BL6NJ_P0077401 Wdr91 protein_coding protein_coding MGP_C57BL6NJ_T0077402.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33838041 33840310 - MGP_C57BL6NJ_P0077402 Wdr91 protein_coding protein_coding MGP_C57BL6NJ_T0077403.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33838293 33840580 - Wdr91 protein_coding retained_intron MGP_C57BL6NJ_T0077404.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33839193 33840583 - Wdr91 protein_coding processed_transcript MGP_C57BL6NJ_T0077405.1 MGP_C57BL6NJ_G0031002.1 mouse_genomes_project 6 33839207 33840589 - Wdr91 protein_coding processed_transcript MGP_C57BL6NJ_T0103272.1 MGP_C57BL6NJ_G0041066.1 mouse_genomes_project 6 93599614 93600413 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016010.1 MGP_C57BL6NJ_G0014055.1 mouse_genomes_project 6 133868559 133869289 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000221.1 MGP_C57BL6NJ_G0000165.1 mouse_genomes_project 6 70308985 70309471 + MGP_C57BL6NJ_P0000221 Igkv15-103 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0080521.1 MGP_C57BL6NJ_G0031699.1 mouse_genomes_project 6 131436194 131443572 - MGP_C57BL6NJ_P0080521 protein_coding protein_coding MGP_C57BL6NJ_T0080522.1 MGP_C57BL6NJ_G0031699.1 mouse_genomes_project 6 131438822 131439276 - protein_coding processed_transcript MGP_C57BL6NJ_T0080523.1 MGP_C57BL6NJ_G0031699.1 mouse_genomes_project 6 131441369 131449705 - MGP_C57BL6NJ_P0080523 protein_coding protein_coding MGP_C57BL6NJ_T0078929.1 MGP_C57BL6NJ_G0031388.1 mouse_genomes_project 6 88707965 88740256 + MGP_C57BL6NJ_P0078929 Emx1 protein_coding protein_coding MGP_C57BL6NJ_T0078930.1 MGP_C57BL6NJ_G0031388.1 mouse_genomes_project 6 88716667 88740360 + Emx1 protein_coding retained_intron MGP_C57BL6NJ_T0015705.1 MGP_C57BL6NJ_G0013750.1 mouse_genomes_project 6 35627217 35627422 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076778.1 MGP_C57BL6NJ_G0030891.1 mouse_genomes_project 6 9306421 9313478 - Ndufa4 protein_coding retained_intron MGP_C57BL6NJ_T0076779.1 MGP_C57BL6NJ_G0030891.1 mouse_genomes_project 6 9306583 9313414 - MGP_C57BL6NJ_P0076779 Ndufa4 protein_coding protein_coding MGP_C57BL6NJ_T0000417.1 MGP_C57BL6NJ_G0000336.1 mouse_genomes_project 6 70488928 70489387 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0076698.1 MGP_C57BL6NJ_G0030871.1 mouse_genomes_project 6 2164398 2198733 - MGP_C57BL6NJ_P0076698 Pon2 protein_coding protein_coding MGP_C57BL6NJ_T0076699.1 MGP_C57BL6NJ_G0030871.1 mouse_genomes_project 6 2170424 2198608 - Pon2 protein_coding retained_intron MGP_C57BL6NJ_T0076700.1 MGP_C57BL6NJ_G0030871.1 mouse_genomes_project 6 2173367 2189293 - Pon2 protein_coding processed_transcript MGP_C57BL6NJ_T0076701.1 MGP_C57BL6NJ_G0030871.1 mouse_genomes_project 6 2177735 2180569 - Pon2 protein_coding retained_intron MGP_C57BL6NJ_T0079441.1 MGP_C57BL6NJ_G0031492.1 mouse_genomes_project 6 95944515 95946419 + 4930590J08Rik protein_coding retained_intron MGP_C57BL6NJ_T0079442.1 MGP_C57BL6NJ_G0031492.1 mouse_genomes_project 6 95945939 95992026 + MGP_C57BL6NJ_P0079442 4930590J08Rik protein_coding protein_coding MGP_C57BL6NJ_T0079443.1 MGP_C57BL6NJ_G0031492.1 mouse_genomes_project 6 95956061 95991941 + MGP_C57BL6NJ_P0079443 4930590J08Rik protein_coding protein_coding MGP_C57BL6NJ_T0079444.1 MGP_C57BL6NJ_G0031492.1 mouse_genomes_project 6 95985564 95991331 + MGP_C57BL6NJ_P0079444 4930590J08Rik protein_coding protein_coding MGP_C57BL6NJ_T0100552.1 MGP_C57BL6NJ_G0038598.1 mouse_genomes_project 6 131434875 131434937 - Rnu7 snRNA snRNA MGP_C57BL6NJ_T0081123.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143509340 143529967 + MGP_C57BL6NJ_P0081123 Emp1 protein_coding protein_coding MGP_C57BL6NJ_T0081124.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143509726 143529967 + MGP_C57BL6NJ_P0081124 Emp1 protein_coding protein_coding MGP_C57BL6NJ_T0081125.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143509726 143529967 + MGP_C57BL6NJ_P0081125 Emp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081126.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143509803 143527171 + Emp1 protein_coding retained_intron MGP_C57BL6NJ_T0081127.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143509863 143512457 + Emp1 protein_coding retained_intron MGP_C57BL6NJ_T0081128.1 MGP_C57BL6NJ_G0031862.1 mouse_genomes_project 6 143514284 143529967 + MGP_C57BL6NJ_P0081128 Emp1 protein_coding protein_coding MGP_C57BL6NJ_T0080275.1 MGP_C57BL6NJ_G0031643.1 mouse_genomes_project 6 126530704 126535573 - MGP_C57BL6NJ_P0080275 Cecr6 protein_coding protein_coding MGP_C57BL6NJ_T0077719.1 MGP_C57BL6NJ_G0031094.1 mouse_genomes_project 6 42137724 42140430 - Tcaf3 protein_coding processed_transcript MGP_C57BL6NJ_T0077720.1 MGP_C57BL6NJ_G0031094.1 mouse_genomes_project 6 42140013 42150133 - MGP_C57BL6NJ_P0077720 Tcaf3 protein_coding protein_coding MGP_C57BL6NJ_T0077721.1 MGP_C57BL6NJ_G0031094.1 mouse_genomes_project 6 42146910 42150453 - MGP_C57BL6NJ_P0077721 Tcaf3 protein_coding protein_coding MGP_C57BL6NJ_T0005171.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90204114 90229350 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005172.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90204114 90246397 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005173.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90204138 90246397 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005174.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90204677 90263990 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005175.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90205186 90246397 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005176.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90205268 90246396 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005177.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90205341 90245459 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0005178.1 MGP_C57BL6NJ_G0004421.1 mouse_genomes_project 6 90226288 90264420 + 1600020E01Rik antisense antisense MGP_C57BL6NJ_T0000266.1 MGP_C57BL6NJ_G0000199.1 mouse_genomes_project 6 72077692 72078254 - MGP_C57BL6NJ_P0000266 Igkv5-37 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0081093.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103350 143116822 + MGP_C57BL6NJ_P0081093 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081094.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103360 143112083 + MGP_C57BL6NJ_P0081094 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081095.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103362 143112047 + MGP_C57BL6NJ_P0081095 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081096.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103364 143109674 + Ddx47 protein_coding retained_intron MGP_C57BL6NJ_T0081097.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103370 143116818 + Ddx47 protein_coding retained_intron MGP_C57BL6NJ_T0081098.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103371 143111161 + MGP_C57BL6NJ_P0081098 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081099.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103373 143108672 + Ddx47 protein_coding retained_intron MGP_C57BL6NJ_T0081100.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103382 143114601 + MGP_C57BL6NJ_P0081100 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081101.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143103391 143114624 + MGP_C57BL6NJ_P0081101 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0081102.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143108396 143112112 + Ddx47 protein_coding processed_transcript MGP_C57BL6NJ_T0081103.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143108867 143111579 + Ddx47 protein_coding retained_intron MGP_C57BL6NJ_T0081104.1 MGP_C57BL6NJ_G0031854.1 mouse_genomes_project 6 143112045 143116818 + MGP_C57BL6NJ_P0081104 Ddx47 protein_coding protein_coding MGP_C57BL6NJ_T0015740.1 MGP_C57BL6NJ_G0013785.1 mouse_genomes_project 6 47916392 47917266 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080597.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632721 131638595 + Mlf2 protein_coding retained_intron MGP_C57BL6NJ_T0080598.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632740 131635742 + Mlf2 protein_coding retained_intron MGP_C57BL6NJ_T0080599.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632740 131634024 + Mlf2 protein_coding retained_intron MGP_C57BL6NJ_T0080600.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632760 131635736 + MGP_C57BL6NJ_P0080600 Mlf2 protein_coding protein_coding MGP_C57BL6NJ_T0080601.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632767 131637502 + MGP_C57BL6NJ_P0080601 Mlf2 protein_coding protein_coding MGP_C57BL6NJ_T0080602.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131632811 131637501 + MGP_C57BL6NJ_P0080602 Mlf2 protein_coding protein_coding MGP_C57BL6NJ_T0080603.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131633245 131635728 + MGP_C57BL6NJ_P0080603 Mlf2 protein_coding protein_coding MGP_C57BL6NJ_T0080604.1 MGP_C57BL6NJ_G0031712.1 mouse_genomes_project 6 131633959 131636650 + Mlf2 protein_coding retained_intron MGP_C57BL6NJ_T0078306.1 MGP_C57BL6NJ_G0031259.1 mouse_genomes_project 6 60266351 60356037 - MGP_C57BL6NJ_P0078306 Gprin3 protein_coding protein_coding MGP_C57BL6NJ_T0015827.1 MGP_C57BL6NJ_G0013872.1 mouse_genomes_project 6 69020762 69021099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076790.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9736853 10188331 - MGP_C57BL6NJ_P0076790 Thsd7a protein_coding protein_coding MGP_C57BL6NJ_T0076791.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9742367 10188488 - MGP_C57BL6NJ_P0076791 Thsd7a protein_coding protein_coding MGP_C57BL6NJ_T0076792.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9742407 9743610 - Thsd7a protein_coding retained_intron MGP_C57BL6NJ_T0076793.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9742629 9845519 - Thsd7a protein_coding processed_transcript MGP_C57BL6NJ_T0076794.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9747330 9751222 - Thsd7a protein_coding retained_intron MGP_C57BL6NJ_T0076795.1 MGP_C57BL6NJ_G0030893.1 mouse_genomes_project 6 9891702 9989536 - Thsd7a protein_coding processed_transcript MGP_C57BL6NJ_T0011881.1 MGP_C57BL6NJ_G0009966.1 mouse_genomes_project 6 3822524 3822704 + Gm27699 misc_RNA misc_RNA MGP_C57BL6NJ_T0002268.1 MGP_C57BL6NJ_G0002159.1 mouse_genomes_project 6 122890413 122891258 + TEC TEC MGP_C57BL6NJ_T0077516.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 37952018 38138456 - MGP_C57BL6NJ_P0077516 Hipk2 protein_coding protein_coding MGP_C57BL6NJ_T0077517.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 37952018 38138504 - MGP_C57BL6NJ_P0077517 Hipk2 protein_coding protein_coding MGP_C57BL6NJ_T0077518.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 37952094 38138350 - MGP_C57BL6NJ_P0077518 Hipk2 protein_coding protein_coding MGP_C57BL6NJ_T0077519.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 37995056 38001618 - Hipk2 protein_coding processed_transcript MGP_C57BL6NJ_T0077520.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 38003788 38079850 - Hipk2 protein_coding retained_intron MGP_C57BL6NJ_T0077521.1 MGP_C57BL6NJ_G0031028.1 mouse_genomes_project 6 38079410 38098784 - Hipk2 protein_coding retained_intron MGP_C57BL6NJ_T0011893.1 MGP_C57BL6NJ_G0009978.1 mouse_genomes_project 6 15652734 15652854 + Gm27402 misc_RNA misc_RNA MGP_C57BL6NJ_T0078235.1 MGP_C57BL6NJ_G0031231.1 mouse_genomes_project 6 58032127 58033027 + MGP_C57BL6NJ_P0078235 Vmn1r15 protein_coding protein_coding MGP_C57BL6NJ_T0000283.1 MGP_C57BL6NJ_G0000211.1 mouse_genomes_project 6 72495583 72495888 - MGP_C57BL6NJ_P0000283 Igkv8-19 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000284.1 MGP_C57BL6NJ_G0000211.1 mouse_genomes_project 6 72495583 72496161 - MGP_C57BL6NJ_P0000284 Igkv8-19 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0005100.1 MGP_C57BL6NJ_G0004372.1 mouse_genomes_project 6 38924507 38934507 - Gm16272 antisense antisense MGP_C57BL6NJ_T0077842.1 MGP_C57BL6NJ_G0031130.1 mouse_genomes_project 6 48507220 48565397 + MGP_C57BL6NJ_P0077842 Sspo protein_coding protein_coding MGP_C57BL6NJ_T0077843.1 MGP_C57BL6NJ_G0031130.1 mouse_genomes_project 6 48507220 48565412 + MGP_C57BL6NJ_P0077843 Sspo protein_coding protein_coding MGP_C57BL6NJ_T0077844.1 MGP_C57BL6NJ_G0031130.1 mouse_genomes_project 6 48540580 48547466 + Sspo protein_coding retained_intron MGP_C57BL6NJ_T0077845.1 MGP_C57BL6NJ_G0031130.1 mouse_genomes_project 6 48548017 48565412 + MGP_C57BL6NJ_P0077845 Sspo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077846.1 MGP_C57BL6NJ_G0031130.1 mouse_genomes_project 6 48556380 48560368 + MGP_C57BL6NJ_P0077846 Sspo protein_coding protein_coding MGP_C57BL6NJ_T0018769.1 MGP_C57BL6NJ_G0016038.1 mouse_genomes_project 6 128949050 128962284 - Gm16556 processed_transcript processed_transcript MGP_C57BL6NJ_T0018770.1 MGP_C57BL6NJ_G0016038.1 mouse_genomes_project 6 128949076 128962260 - Gm16556 processed_transcript processed_transcript MGP_C57BL6NJ_T0077717.1 MGP_C57BL6NJ_G0031092.1 mouse_genomes_project 6 42037032 42038463 - MGP_C57BL6NJ_P0077717 Olfr456 protein_coding protein_coding MGP_C57BL6NJ_T0008787.1 MGP_C57BL6NJ_G0007102.1 mouse_genomes_project 6 54331220 54333397 + Gm16499 lincRNA lincRNA MGP_C57BL6NJ_T0008788.1 MGP_C57BL6NJ_G0007102.1 mouse_genomes_project 6 54331221 54331287 + Gm16499 lincRNA lincRNA MGP_C57BL6NJ_T0008857.1 MGP_C57BL6NJ_G0007158.1 mouse_genomes_project 6 95120839 95121951 - Gm44278 lincRNA lincRNA MGP_C57BL6NJ_T0008960.1 MGP_C57BL6NJ_G0007237.1 mouse_genomes_project 6 156348058 156349333 - Gm15767 lincRNA lincRNA MGP_C57BL6NJ_T0008961.1 MGP_C57BL6NJ_G0007237.1 mouse_genomes_project 6 156348254 156349325 - Gm15767 lincRNA lincRNA MGP_C57BL6NJ_T0015623.1 MGP_C57BL6NJ_G0013668.1 mouse_genomes_project 6 1033506 1033753 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005275.1 MGP_C57BL6NJ_G0004495.1 mouse_genomes_project 6 147072747 147092128 + B230110G15Rik antisense antisense MGP_C57BL6NJ_T0002222.1 MGP_C57BL6NJ_G0002113.1 mouse_genomes_project 6 95718070 95719746 - TEC TEC MGP_C57BL6NJ_T0005137.1 MGP_C57BL6NJ_G0004401.1 mouse_genomes_project 6 74562755 74565483 - 4933431G14Rik antisense antisense MGP_C57BL6NJ_T0005138.1 MGP_C57BL6NJ_G0004401.1 mouse_genomes_project 6 74562755 74565740 - 4933431G14Rik antisense antisense MGP_C57BL6NJ_T0102296.1 MGP_C57BL6NJ_G0040270.1 mouse_genomes_project 6 67776877 67798920 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102297.1 MGP_C57BL6NJ_G0040270.1 mouse_genomes_project 6 67785984 67800026 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102298.1 MGP_C57BL6NJ_G0040270.1 mouse_genomes_project 6 67798687 67799420 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0002148.1 MGP_C57BL6NJ_G0002039.1 mouse_genomes_project 6 74542411 74545024 + TEC TEC MGP_C57BL6NJ_T0002640.1 MGP_C57BL6NJ_G0002524.1 mouse_genomes_project 6 41063810 41063824 + MGP_C57BL6NJ_P0002640 Trbd2 TR_D_gene TR_D_gene MGP_C57BL6NJ_T0079311.1 MGP_C57BL6NJ_G0031457.1 mouse_genomes_project 6 93538128 93570737 + MGP_C57BL6NJ_P0079311 Txnrd3 protein_coding protein_coding MGP_C57BL6NJ_T0079312.1 MGP_C57BL6NJ_G0031457.1 mouse_genomes_project 6 93538128 93570737 + MGP_C57BL6NJ_P0079312 Txnrd3 protein_coding protein_coding MGP_C57BL6NJ_T0002317.1 MGP_C57BL6NJ_G0002207.1 mouse_genomes_project 6 154171742 154174929 - TEC TEC MGP_C57BL6NJ_T0080944.1 MGP_C57BL6NJ_G0031789.1 mouse_genomes_project 6 136747812 136755712 + MGP_C57BL6NJ_P0080944 Klre1 protein_coding protein_coding MGP_C57BL6NJ_T0080945.1 MGP_C57BL6NJ_G0031789.1 mouse_genomes_project 6 136748158 136755662 + MGP_C57BL6NJ_P0080945 Klre1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080946.1 MGP_C57BL6NJ_G0031789.1 mouse_genomes_project 6 136753323 136755709 + Klre1 protein_coding retained_intron MGP_C57BL6NJ_T0015999.1 MGP_C57BL6NJ_G0014044.1 mouse_genomes_project 6 129697240 129697735 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011895.1 MGP_C57BL6NJ_G0009980.1 mouse_genomes_project 6 17234532 17234790 - Gm24213 misc_RNA misc_RNA MGP_C57BL6NJ_T0015667.1 MGP_C57BL6NJ_G0013712.1 mouse_genomes_project 6 16659542 16661584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081089.1 MGP_C57BL6NJ_G0031852.1 mouse_genomes_project 6 142998421 143005389 + MGP_C57BL6NJ_P0081089 Cdkn1b protein_coding protein_coding MGP_C57BL6NJ_T0081090.1 MGP_C57BL6NJ_G0031852.1 mouse_genomes_project 6 142998421 143005389 + MGP_C57BL6NJ_P0081090 Cdkn1b protein_coding protein_coding MGP_C57BL6NJ_T0081091.1 MGP_C57BL6NJ_G0031852.1 mouse_genomes_project 6 142998533 143005196 + MGP_C57BL6NJ_P0081091 Cdkn1b protein_coding protein_coding MGP_C57BL6NJ_T0005277.1 MGP_C57BL6NJ_G0004497.1 mouse_genomes_project 6 151461863 151473719 + 5330439B14Rik antisense antisense MGP_C57BL6NJ_T0077473.1 MGP_C57BL6NJ_G0031019.1 mouse_genomes_project 6 37317237 37462950 - MGP_C57BL6NJ_P0077473 D630045J12Rik protein_coding protein_coding MGP_C57BL6NJ_T0077474.1 MGP_C57BL6NJ_G0031019.1 mouse_genomes_project 6 37320076 37341880 - D630045J12Rik protein_coding retained_intron MGP_C57BL6NJ_T0077475.1 MGP_C57BL6NJ_G0031019.1 mouse_genomes_project 6 37320082 37341823 - D630045J12Rik protein_coding retained_intron MGP_C57BL6NJ_T0077476.1 MGP_C57BL6NJ_G0031019.1 mouse_genomes_project 6 37331504 37393196 - D630045J12Rik protein_coding retained_intron MGP_C57BL6NJ_T0077477.1 MGP_C57BL6NJ_G0031019.1 mouse_genomes_project 6 37354576 37365780 - D630045J12Rik protein_coding retained_intron MGP_C57BL6NJ_T0015688.1 MGP_C57BL6NJ_G0013733.1 mouse_genomes_project 6 22860834 22861543 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077211.1 MGP_C57BL6NJ_G0030971.1 mouse_genomes_project 6 28882481 28986308 - MGP_C57BL6NJ_P0077211 Ube2h protein_coding protein_coding MGP_C57BL6NJ_T0077212.1 MGP_C57BL6NJ_G0030971.1 mouse_genomes_project 6 28893853 28986297 - Ube2h protein_coding processed_transcript MGP_C57BL6NJ_T0000432.1 MGP_C57BL6NJ_G0000351.1 mouse_genomes_project 6 71140593 71140964 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078255.1 MGP_C57BL6NJ_G0031242.1 mouse_genomes_project 6 58556485 58661434 - MGP_C57BL6NJ_P0078255 Vopp1 protein_coding protein_coding MGP_C57BL6NJ_T0078256.1 MGP_C57BL6NJ_G0031242.1 mouse_genomes_project 6 58584393 58661278 - MGP_C57BL6NJ_P0078256 Vopp1 protein_coding protein_coding MGP_C57BL6NJ_T0078257.1 MGP_C57BL6NJ_G0031242.1 mouse_genomes_project 6 58586700 58661448 - MGP_C57BL6NJ_P0078257 Vopp1 protein_coding protein_coding MGP_C57BL6NJ_T0078258.1 MGP_C57BL6NJ_G0031242.1 mouse_genomes_project 6 58590484 58661452 - MGP_C57BL6NJ_P0078258 Vopp1 protein_coding protein_coding MGP_C57BL6NJ_T0078259.1 MGP_C57BL6NJ_G0031242.1 mouse_genomes_project 6 58594704 58660938 - Vopp1 protein_coding processed_transcript MGP_C57BL6NJ_T0015758.1 MGP_C57BL6NJ_G0013803.1 mouse_genomes_project 6 50854432 50855144 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008802.1 MGP_C57BL6NJ_G0007114.1 mouse_genomes_project 6 69146029 69169709 + Gm42889 lincRNA lincRNA MGP_C57BL6NJ_T0080208.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877449 125890777 + Rad52 protein_coding processed_transcript MGP_C57BL6NJ_T0080209.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877454 125898010 + MGP_C57BL6NJ_P0080209 Rad52 protein_coding protein_coding MGP_C57BL6NJ_T0080210.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877454 125898015 + MGP_C57BL6NJ_P0080210 Rad52 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080211.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877456 125889166 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080212.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877456 125888539 + Rad52 protein_coding processed_transcript MGP_C57BL6NJ_T0080213.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877479 125896706 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080214.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877485 125894559 + Rad52 protein_coding processed_transcript MGP_C57BL6NJ_T0080215.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877485 125894559 + Rad52 protein_coding processed_transcript MGP_C57BL6NJ_T0080216.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877490 125896204 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080217.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125877527 125898010 + MGP_C57BL6NJ_P0080217 Rad52 protein_coding protein_coding MGP_C57BL6NJ_T0080218.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125888679 125889660 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080219.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125889392 125894177 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080220.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125890693 125894322 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0080221.1 MGP_C57BL6NJ_G0031635.1 mouse_genomes_project 6 125893472 125896950 + Rad52 protein_coding retained_intron MGP_C57BL6NJ_T0016079.1 MGP_C57BL6NJ_G0014124.1 mouse_genomes_project 6 145010943 145011222 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002874.1 MGP_C57BL6NJ_G0002728.1 mouse_genomes_project 6 40551323 40551608 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002056.1 MGP_C57BL6NJ_G0001947.1 mouse_genomes_project 6 2179889 2181715 + TEC TEC MGP_C57BL6NJ_T0002149.1 MGP_C57BL6NJ_G0002040.1 mouse_genomes_project 6 74908264 74909824 + TEC TEC MGP_C57BL6NJ_T0015853.1 MGP_C57BL6NJ_G0013898.1 mouse_genomes_project 6 74502282 74503384 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081154.1 MGP_C57BL6NJ_G0031867.1 mouse_genomes_project 6 145013222 145108128 - MGP_C57BL6NJ_P0081154 Gucy2c protein_coding protein_coding MGP_C57BL6NJ_T0081155.1 MGP_C57BL6NJ_G0031867.1 mouse_genomes_project 6 145013223 145108105 - MGP_C57BL6NJ_P0081155 Gucy2c protein_coding protein_coding MGP_C57BL6NJ_T0002221.1 MGP_C57BL6NJ_G0002112.1 mouse_genomes_project 6 95705903 95706929 - TEC TEC MGP_C57BL6NJ_T0015769.1 MGP_C57BL6NJ_G0013814.1 mouse_genomes_project 6 54290330 54291087 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000230.1 MGP_C57BL6NJ_G0000171.1 mouse_genomes_project 6 70602497 70602777 + MGP_C57BL6NJ_P0000230 Igkv10-94 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0103277.1 MGP_C57BL6NJ_G0041071.1 mouse_genomes_project 6 93974046 93974284 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0080927.1 MGP_C57BL6NJ_G0031784.1 mouse_genomes_project 6 136575252 136590993 + MGP_C57BL6NJ_P0080927 Clec9a protein_coding protein_coding MGP_C57BL6NJ_T0080928.1 MGP_C57BL6NJ_G0031784.1 mouse_genomes_project 6 136575253 136588799 + MGP_C57BL6NJ_P0080928 Clec9a protein_coding protein_coding MGP_C57BL6NJ_T0080929.1 MGP_C57BL6NJ_G0031784.1 mouse_genomes_project 6 136575345 136588588 + MGP_C57BL6NJ_P0080929 Clec9a protein_coding protein_coding MGP_C57BL6NJ_T0080930.1 MGP_C57BL6NJ_G0031784.1 mouse_genomes_project 6 136575345 136588588 + MGP_C57BL6NJ_P0080930 Clec9a protein_coding protein_coding MGP_C57BL6NJ_T0016020.1 MGP_C57BL6NJ_G0014065.1 mouse_genomes_project 6 135237658 135238388 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079122.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 90861003 91065739 - MGP_C57BL6NJ_P0079122 Antxr1 protein_coding protein_coding MGP_C57BL6NJ_T0079123.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 90861006 91037512 - MGP_C57BL6NJ_P0079123 Antxr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079124.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 90889139 91065699 - MGP_C57BL6NJ_P0079124 Antxr1 protein_coding protein_coding MGP_C57BL6NJ_T0079125.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 90909770 91065739 - MGP_C57BL6NJ_P0079125 Antxr1 protein_coding protein_coding MGP_C57BL6NJ_T0079126.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 90930424 90997842 - Antxr1 protein_coding processed_transcript MGP_C57BL6NJ_T0079127.1 MGP_C57BL6NJ_G0031424.1 mouse_genomes_project 6 91008019 91065796 - Antxr1 protein_coding retained_intron MGP_C57BL6NJ_T0015750.1 MGP_C57BL6NJ_G0013795.1 mouse_genomes_project 6 49199059 49199660 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002243.1 MGP_C57BL6NJ_G0002134.1 mouse_genomes_project 6 105969556 105972241 - TEC TEC MGP_C57BL6NJ_T0080975.1 MGP_C57BL6NJ_G0031800.1 mouse_genomes_project 6 137351905 137367932 - MGP_C57BL6NJ_P0080975 Klra6 protein_coding protein_coding MGP_C57BL6NJ_T0015976.1 MGP_C57BL6NJ_G0014021.1 mouse_genomes_project 6 123618390 123618891 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002074.1 MGP_C57BL6NJ_G0001965.1 mouse_genomes_project 6 26723728 26727526 - TEC TEC MGP_C57BL6NJ_T0015684.1 MGP_C57BL6NJ_G0013729.1 mouse_genomes_project 6 21325632 21327678 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079448.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96142965 96217170 + MGP_C57BL6NJ_P0079448 Nr2c2 protein_coding protein_coding MGP_C57BL6NJ_T0079449.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96144008 96213806 + MGP_C57BL6NJ_P0079449 Nr2c2 protein_coding protein_coding MGP_C57BL6NJ_T0079450.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96183403 96185241 + MGP_C57BL6NJ_P0079450 Nr2c2 protein_coding protein_coding MGP_C57BL6NJ_T0079451.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96184044 96187642 + Nr2c2 protein_coding retained_intron MGP_C57BL6NJ_T0079452.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96185204 96214769 + MGP_C57BL6NJ_P0079452 Nr2c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079453.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96191862 96202746 + Nr2c2 protein_coding processed_transcript MGP_C57BL6NJ_T0079454.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96203114 96204961 + Nr2c2 protein_coding retained_intron MGP_C57BL6NJ_T0079455.1 MGP_C57BL6NJ_G0031494.1 mouse_genomes_project 6 96210310 96221847 + Nr2c2 protein_coding processed_transcript MGP_C57BL6NJ_T0002115.1 MGP_C57BL6NJ_G0002006.1 mouse_genomes_project 6 45946955 45950335 + TEC TEC MGP_C57BL6NJ_T0015788.1 MGP_C57BL6NJ_G0013833.1 mouse_genomes_project 6 63824625 63825757 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000225.1 MGP_C57BL6NJ_G0000168.1 mouse_genomes_project 6 70427719 70428498 + MGP_C57BL6NJ_P0000225 Igkv1-99 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000226.1 MGP_C57BL6NJ_G0000168.1 mouse_genomes_project 6 70427733 70428498 + MGP_C57BL6NJ_P0000226 Igkv1-99 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000404.1 MGP_C57BL6NJ_G0000323.1 mouse_genomes_project 6 69910959 69911363 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0002127.1 MGP_C57BL6NJ_G0002018.1 mouse_genomes_project 6 53144600 53145212 - TEC TEC MGP_C57BL6NJ_T0102544.1 MGP_C57BL6NJ_G0040389.1 mouse_genomes_project 6 141235272 141238848 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102545.1 MGP_C57BL6NJ_G0040389.1 mouse_genomes_project 6 141235305 141237576 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0005182.1 MGP_C57BL6NJ_G0004425.1 mouse_genomes_project 6 91668979 91674596 - Gm26636 antisense antisense MGP_C57BL6NJ_T0078389.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68605732 68608043 - MGP_C57BL6NJ_P0078389 Gadd45a protein_coding protein_coding MGP_C57BL6NJ_T0078390.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68606095 68607838 - Gadd45a protein_coding retained_intron MGP_C57BL6NJ_T0078391.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68606095 68608001 - MGP_C57BL6NJ_P0078391 Gadd45a protein_coding protein_coding MGP_C57BL6NJ_T0078392.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68606102 68607888 - MGP_C57BL6NJ_P0078392 Gadd45a protein_coding protein_coding MGP_C57BL6NJ_T0078393.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68606215 68607823 - Gadd45a protein_coding retained_intron MGP_C57BL6NJ_T0078394.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68607007 68608014 - Gadd45a protein_coding retained_intron MGP_C57BL6NJ_T0078395.1 MGP_C57BL6NJ_G0031282.1 mouse_genomes_project 6 68607533 68608094 - Gadd45a protein_coding retained_intron MGP_C57BL6NJ_T0002328.1 MGP_C57BL6NJ_G0002218.1 mouse_genomes_project 6 157536823 157542258 - TEC TEC MGP_C57BL6NJ_T0002145.1 MGP_C57BL6NJ_G0002036.1 mouse_genomes_project 6 74199513 74202322 + TEC TEC MGP_C57BL6NJ_T0103309.1 MGP_C57BL6NJ_G0041102.1 mouse_genomes_project 6 140946864 140947810 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015966.1 MGP_C57BL6NJ_G0014011.1 mouse_genomes_project 6 120710619 120710950 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011886.1 MGP_C57BL6NJ_G0009971.1 mouse_genomes_project 6 15415239 15415371 + Gm27755 misc_RNA misc_RNA MGP_C57BL6NJ_T0078641.1 MGP_C57BL6NJ_G0031332.1 mouse_genomes_project 6 81311387 81313629 + MGP_C57BL6NJ_P0078641 Reg3b protein_coding protein_coding MGP_C57BL6NJ_T0078642.1 MGP_C57BL6NJ_G0031332.1 mouse_genomes_project 6 81311591 81314197 + MGP_C57BL6NJ_P0078642 Reg3b protein_coding protein_coding MGP_C57BL6NJ_T0078643.1 MGP_C57BL6NJ_G0031332.1 mouse_genomes_project 6 81311628 81313639 + MGP_C57BL6NJ_P0078643 Reg3b protein_coding protein_coding MGP_C57BL6NJ_T0078644.1 MGP_C57BL6NJ_G0031332.1 mouse_genomes_project 6 81313261 81314149 + Reg3b protein_coding retained_intron MGP_C57BL6NJ_T0080758.1 MGP_C57BL6NJ_G0031742.1 mouse_genomes_project 6 133752179 133802348 - MGP_C57BL6NJ_P0080758 Dyrk4 protein_coding protein_coding MGP_C57BL6NJ_T0080759.1 MGP_C57BL6NJ_G0031742.1 mouse_genomes_project 6 133752352 133761534 - MGP_C57BL6NJ_P0080759 Dyrk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080760.1 MGP_C57BL6NJ_G0031742.1 mouse_genomes_project 6 133752358 133788039 - Dyrk4 protein_coding processed_transcript MGP_C57BL6NJ_T0077436.1 MGP_C57BL6NJ_G0031010.1 mouse_genomes_project 6 35421012 35565644 + MGP_C57BL6NJ_P0077436 Chrm2 protein_coding protein_coding MGP_C57BL6NJ_T0077437.1 MGP_C57BL6NJ_G0031010.1 mouse_genomes_project 6 35421123 35480836 + Chrm2 protein_coding processed_transcript MGP_C57BL6NJ_T0077083.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758579 27774457 - MGP_C57BL6NJ_P0077083 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077084.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758582 27770423 - MGP_C57BL6NJ_P0077084 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077085.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758582 27774490 - MGP_C57BL6NJ_P0077085 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077086.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758582 27770375 - MGP_C57BL6NJ_P0077086 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077087.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758583 27774468 - MGP_C57BL6NJ_P0077087 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077088.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27758590 27761566 - MGP_C57BL6NJ_P0077088 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077089.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27762707 27764590 - Impdh1 protein_coding retained_intron MGP_C57BL6NJ_T0077090.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27763252 27774403 - MGP_C57BL6NJ_P0077090 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0077091.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27765000 27767784 - Impdh1 protein_coding retained_intron MGP_C57BL6NJ_T0077092.1 MGP_C57BL6NJ_G0030953.1 mouse_genomes_project 6 27765166 27774055 - MGP_C57BL6NJ_P0077092 Impdh1 protein_coding protein_coding MGP_C57BL6NJ_T0008874.1 MGP_C57BL6NJ_G0007171.1 mouse_genomes_project 6 106222530 106241314 + Gm44169 lincRNA lincRNA MGP_C57BL6NJ_T0005204.1 MGP_C57BL6NJ_G0004438.1 mouse_genomes_project 6 99324254 99327839 - Kbtbd8os antisense antisense MGP_C57BL6NJ_T0000288.1 MGP_C57BL6NJ_G0000214.1 mouse_genomes_project 6 72635531 72636077 - MGP_C57BL6NJ_P0000288 Igkv6-15 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0076934.1 MGP_C57BL6NJ_G0030916.1 mouse_genomes_project 6 19226109 19781630 + MGP_C57BL6NJ_P0076934 Kcnd2 protein_coding protein_coding MGP_C57BL6NJ_T0002872.1 MGP_C57BL6NJ_G0002726.1 mouse_genomes_project 6 40533572 40533848 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0008969.1 MGP_C57BL6NJ_G0007243.1 mouse_genomes_project 6 157878642 157892208 + Gm44115 lincRNA lincRNA MGP_C57BL6NJ_T0015949.1 MGP_C57BL6NJ_G0013994.1 mouse_genomes_project 6 115692704 115693279 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080752.1 MGP_C57BL6NJ_G0031740.1 mouse_genomes_project 6 133696155 133725372 - MGP_C57BL6NJ_P0080752 Ndufa9 protein_coding protein_coding MGP_C57BL6NJ_T0080753.1 MGP_C57BL6NJ_G0031740.1 mouse_genomes_project 6 133696430 133725372 - MGP_C57BL6NJ_P0080753 Ndufa9 protein_coding protein_coding MGP_C57BL6NJ_T0080754.1 MGP_C57BL6NJ_G0031740.1 mouse_genomes_project 6 133719985 133725383 - Ndufa9 protein_coding retained_intron MGP_C57BL6NJ_T0015702.1 MGP_C57BL6NJ_G0013747.1 mouse_genomes_project 6 33735997 33736194 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077894.1 MGP_C57BL6NJ_G0031145.1 mouse_genomes_project 6 48795883 48801899 + MGP_C57BL6NJ_P0077894 Gimap7 protein_coding protein_coding MGP_C57BL6NJ_T0077896.1 MGP_C57BL6NJ_G0031145.1 mouse_genomes_project 6 48795919 48801002 + MGP_C57BL6NJ_P0077896 Gimap7 protein_coding protein_coding MGP_C57BL6NJ_T0077897.1 MGP_C57BL6NJ_G0031145.1 mouse_genomes_project 6 48795927 48796933 + Gimap7 protein_coding retained_intron MGP_C57BL6NJ_T0081373.1 MGP_C57BL6NJ_G0031913.1 mouse_genomes_project 6 151611047 151630062 + MGP_C57BL6NJ_P0081373 Cmas protein_coding protein_coding MGP_C57BL6NJ_T0081374.1 MGP_C57BL6NJ_G0031913.1 mouse_genomes_project 6 151611115 151624938 + MGP_C57BL6NJ_P0081374 Cmas protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081375.1 MGP_C57BL6NJ_G0031913.1 mouse_genomes_project 6 151611125 151629012 + MGP_C57BL6NJ_P0081375 Cmas protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081376.1 MGP_C57BL6NJ_G0031913.1 mouse_genomes_project 6 151611136 151626568 + MGP_C57BL6NJ_P0081376 Cmas protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081377.1 MGP_C57BL6NJ_G0031913.1 mouse_genomes_project 6 151624313 151625682 + Cmas protein_coding retained_intron MGP_C57BL6NJ_T0015880.1 MGP_C57BL6NJ_G0013925.1 mouse_genomes_project 6 87284251 87284615 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076638.1 MGP_C57BL6NJ_G0030861.1 mouse_genomes_project 6 756106 759751 + MGP_C57BL6NJ_P0076638 Gngt1 protein_coding protein_coding MGP_C57BL6NJ_T0076639.1 MGP_C57BL6NJ_G0030861.1 mouse_genomes_project 6 756111 759217 + Gngt1 protein_coding retained_intron MGP_C57BL6NJ_T0101779.1 MGP_C57BL6NJ_G0039825.1 mouse_genomes_project 6 23364217 23364349 - Gm24443 snoRNA snoRNA MGP_C57BL6NJ_T0002206.1 MGP_C57BL6NJ_G0002097.1 mouse_genomes_project 6 91811973 91815800 - TEC TEC MGP_C57BL6NJ_T0078731.1 MGP_C57BL6NJ_G0031352.1 mouse_genomes_project 6 86340893 86350359 + MGP_C57BL6NJ_P0078731 Dqx1 protein_coding protein_coding MGP_C57BL6NJ_T0078732.1 MGP_C57BL6NJ_G0031352.1 mouse_genomes_project 6 86341146 86343038 + MGP_C57BL6NJ_P0078732 Dqx1 protein_coding non_stop_decay MGP_C57BL6NJ_T0078236.1 MGP_C57BL6NJ_G0031232.1 mouse_genomes_project 6 58092109 58093218 - MGP_C57BL6NJ_P0078236 Vmn1r16 protein_coding protein_coding MGP_C57BL6NJ_T0002137.1 MGP_C57BL6NJ_G0002028.1 mouse_genomes_project 6 61911790 61915818 - TEC TEC MGP_C57BL6NJ_T0016087.1 MGP_C57BL6NJ_G0014132.1 mouse_genomes_project 6 149740321 149740438 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015862.1 MGP_C57BL6NJ_G0013907.1 mouse_genomes_project 6 78506866 78507265 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015628.1 MGP_C57BL6NJ_G0013673.1 mouse_genomes_project 6 1687015 1687187 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016075.1 MGP_C57BL6NJ_G0014120.1 mouse_genomes_project 6 143493835 143494864 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079354.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94443920 94523672 + Aldh1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0079355.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94514813 94566158 + MGP_C57BL6NJ_P0079355 Aldh1l1 protein_coding protein_coding MGP_C57BL6NJ_T0079356.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94514829 94565124 + MGP_C57BL6NJ_P0079356 Aldh1l1 protein_coding protein_coding MGP_C57BL6NJ_T0079357.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94514867 94524247 + MGP_C57BL6NJ_P0079357 Aldh1l1 protein_coding protein_coding MGP_C57BL6NJ_T0079358.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94514872 94565115 + MGP_C57BL6NJ_P0079358 Aldh1l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079359.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94531987 94535166 + Aldh1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0079360.1 MGP_C57BL6NJ_G0031478.1 mouse_genomes_project 6 94555311 94563036 + Aldh1l1 protein_coding retained_intron MGP_C57BL6NJ_T0008886.1 MGP_C57BL6NJ_G0007181.1 mouse_genomes_project 6 119162560 119164056 - 1700015O11Rik lincRNA lincRNA MGP_C57BL6NJ_T0081489.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622145 155627149 - MGP_C57BL6NJ_P0081489 Asun protein_coding protein_coding MGP_C57BL6NJ_T0081490.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622145 155630015 - MGP_C57BL6NJ_P0081490 Asun protein_coding protein_coding MGP_C57BL6NJ_T0081491.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622145 155650628 - MGP_C57BL6NJ_P0081491 Asun protein_coding protein_coding MGP_C57BL6NJ_T0081492.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622154 155623894 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0081493.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622444 155622915 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0081494.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155622607 155626549 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0081495.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155625001 155628749 - Asun protein_coding processed_transcript MGP_C57BL6NJ_T0081496.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155626595 155627326 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0081497.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155627517 155649060 - MGP_C57BL6NJ_P0081497 Asun protein_coding protein_coding MGP_C57BL6NJ_T0081498.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155635712 155639089 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0081499.1 MGP_C57BL6NJ_G0031930.1 mouse_genomes_project 6 155645884 155650573 - Asun protein_coding retained_intron MGP_C57BL6NJ_T0079110.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766835 90817293 + MGP_C57BL6NJ_P0079110 Gfpt1 protein_coding protein_coding MGP_C57BL6NJ_T0079111.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766835 90780762 + MGP_C57BL6NJ_P0079111 Gfpt1 protein_coding protein_coding MGP_C57BL6NJ_T0079112.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766839 90779297 + Gfpt1 protein_coding processed_transcript MGP_C57BL6NJ_T0079113.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766839 90769648 + Gfpt1 protein_coding retained_intron MGP_C57BL6NJ_T0079114.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766839 90780762 + MGP_C57BL6NJ_P0079114 Gfpt1 protein_coding protein_coding MGP_C57BL6NJ_T0079115.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90766880 90813338 + MGP_C57BL6NJ_P0079115 Gfpt1 protein_coding protein_coding MGP_C57BL6NJ_T0079116.1 MGP_C57BL6NJ_G0031422.1 mouse_genomes_project 6 90801906 90811454 + Gfpt1 protein_coding retained_intron MGP_C57BL6NJ_T0077115.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27974210 27977351 + Ccdc136 protein_coding processed_transcript MGP_C57BL6NJ_T0077116.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27974531 28005915 + MGP_C57BL6NJ_P0077116 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077117.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27974544 28005910 + MGP_C57BL6NJ_P0077117 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077118.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27974586 28005956 + MGP_C57BL6NJ_P0077118 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077119.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27974586 28005965 + MGP_C57BL6NJ_P0077119 Ccdc136 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077120.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27976827 28005910 + MGP_C57BL6NJ_P0077120 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077121.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27976827 28005917 + MGP_C57BL6NJ_P0077121 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077122.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27981860 28005819 + MGP_C57BL6NJ_P0077122 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077123.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27989066 28005950 + MGP_C57BL6NJ_P0077123 Ccdc136 protein_coding protein_coding MGP_C57BL6NJ_T0077124.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27991445 28005914 + Ccdc136 protein_coding processed_transcript MGP_C57BL6NJ_T0077125.1 MGP_C57BL6NJ_G0030959.1 mouse_genomes_project 6 27993913 28005916 + Ccdc136 protein_coding processed_transcript MGP_C57BL6NJ_T0080357.1 MGP_C57BL6NJ_G0031661.1 mouse_genomes_project 6 128670890 128679791 + MGP_C57BL6NJ_P0080357 M6pr protein_coding protein_coding MGP_C57BL6NJ_T0080358.1 MGP_C57BL6NJ_G0031661.1 mouse_genomes_project 6 128670890 128679791 + MGP_C57BL6NJ_P0080358 M6pr protein_coding protein_coding MGP_C57BL6NJ_T0080359.1 MGP_C57BL6NJ_G0031661.1 mouse_genomes_project 6 128671169 128678902 + M6pr protein_coding retained_intron MGP_C57BL6NJ_T0008765.1 MGP_C57BL6NJ_G0007086.1 mouse_genomes_project 6 48966816 48976532 + lincRNA lincRNA MGP_C57BL6NJ_T0099135.1 MGP_C57BL6NJ_G0037199.1 mouse_genomes_project 6 93137001 93137136 - Gm25961 rRNA rRNA MGP_C57BL6NJ_T0018737.1 MGP_C57BL6NJ_G0016027.1 mouse_genomes_project 6 61323051 61478850 - processed_transcript lincRNA MGP_C57BL6NJ_T0018738.1 MGP_C57BL6NJ_G0016027.1 mouse_genomes_project 6 61463111 61478841 - processed_transcript lincRNA MGP_C57BL6NJ_T0018739.1 MGP_C57BL6NJ_G0016027.1 mouse_genomes_project 6 61465369 61478814 - processed_transcript lincRNA MGP_C57BL6NJ_T0018740.1 MGP_C57BL6NJ_G0016027.1 mouse_genomes_project 6 61465385 61478823 - processed_transcript lincRNA MGP_C57BL6NJ_T0018741.1 MGP_C57BL6NJ_G0016027.1 mouse_genomes_project 6 61470385 61478850 - processed_transcript retained_intron MGP_C57BL6NJ_T0103275.1 MGP_C57BL6NJ_G0041069.1 mouse_genomes_project 6 93817561 93818503 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078368.1 MGP_C57BL6NJ_G0031272.1 mouse_genomes_project 6 68066517 68079540 + MGP_C57BL6NJ_P0078368 Mad2l1 protein_coding protein_coding MGP_C57BL6NJ_T0078369.1 MGP_C57BL6NJ_G0031272.1 mouse_genomes_project 6 68066552 68073340 + Mad2l1 protein_coding retained_intron MGP_C57BL6NJ_T0078370.1 MGP_C57BL6NJ_G0031272.1 mouse_genomes_project 6 68066595 68073311 + MGP_C57BL6NJ_P0078370 Mad2l1 protein_coding protein_coding MGP_C57BL6NJ_T0078371.1 MGP_C57BL6NJ_G0031272.1 mouse_genomes_project 6 68066805 68067201 + Mad2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0005147.1 MGP_C57BL6NJ_G0004408.1 mouse_genomes_project 6 86011952 86014959 + Gm17034 antisense antisense MGP_C57BL6NJ_T0002204.1 MGP_C57BL6NJ_G0002095.1 mouse_genomes_project 6 91749288 91752827 + TEC TEC MGP_C57BL6NJ_T0078207.1 MGP_C57BL6NJ_G0031217.1 mouse_genomes_project 6 57509498 57529711 - MGP_C57BL6NJ_P0078207 Kbtbd2 protein_coding protein_coding MGP_C57BL6NJ_T0078208.1 MGP_C57BL6NJ_G0031217.1 mouse_genomes_project 6 57509499 57529788 - MGP_C57BL6NJ_P0078208 Kbtbd2 protein_coding protein_coding MGP_C57BL6NJ_T0078209.1 MGP_C57BL6NJ_G0031217.1 mouse_genomes_project 6 57521352 57529254 - MGP_C57BL6NJ_P0078209 Kbtbd2 protein_coding protein_coding MGP_C57BL6NJ_T0078210.1 MGP_C57BL6NJ_G0031217.1 mouse_genomes_project 6 57521497 57528722 - Kbtbd2 protein_coding processed_transcript MGP_C57BL6NJ_T0002228.1 MGP_C57BL6NJ_G0002119.1 mouse_genomes_project 6 97179556 97181019 + TEC TEC MGP_C57BL6NJ_T0011054.1 MGP_C57BL6NJ_G0009139.1 mouse_genomes_project 6 122406138 122406208 - Mir7043 miRNA miRNA MGP_C57BL6NJ_T0008884.1 MGP_C57BL6NJ_G0007179.1 mouse_genomes_project 6 118154805 118166010 + lincRNA lincRNA MGP_C57BL6NJ_T0008892.1 MGP_C57BL6NJ_G0007187.1 mouse_genomes_project 6 123349587 123358084 + Gm9946 lincRNA lincRNA MGP_C57BL6NJ_T0008893.1 MGP_C57BL6NJ_G0007187.1 mouse_genomes_project 6 123349587 123362192 + Gm9946 lincRNA lincRNA MGP_C57BL6NJ_T0008894.1 MGP_C57BL6NJ_G0007187.1 mouse_genomes_project 6 123357562 123357946 + Gm9946 lincRNA lincRNA MGP_C57BL6NJ_T0099133.1 MGP_C57BL6NJ_G0037197.1 mouse_genomes_project 6 61297976 61298095 + n-R5s162 rRNA rRNA MGP_C57BL6NJ_T0015661.1 MGP_C57BL6NJ_G0013706.1 mouse_genomes_project 6 15436314 15436924 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015648.1 MGP_C57BL6NJ_G0013693.1 mouse_genomes_project 6 8226039 8232211 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079845.1 MGP_C57BL6NJ_G0031568.1 mouse_genomes_project 6 119040145 119056929 - MGP_C57BL6NJ_P0079845 Emc3 protein_coding protein_coding MGP_C57BL6NJ_T0079846.1 MGP_C57BL6NJ_G0031568.1 mouse_genomes_project 6 119045063 119046181 - Emc3 protein_coding retained_intron MGP_C57BL6NJ_T0079847.1 MGP_C57BL6NJ_G0031568.1 mouse_genomes_project 6 119055679 119056895 - Emc3 protein_coding retained_intron MGP_C57BL6NJ_T0079372.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95002588 95116167 - MGP_C57BL6NJ_P0079372 Nup210 protein_coding protein_coding MGP_C57BL6NJ_T0079373.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95002590 95116157 - MGP_C57BL6NJ_P0079373 Nup210 protein_coding protein_coding MGP_C57BL6NJ_T0079374.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95002590 95046473 - MGP_C57BL6NJ_P0079374 Nup210 protein_coding protein_coding MGP_C57BL6NJ_T0079375.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95002837 95006964 - Nup210 protein_coding processed_transcript MGP_C57BL6NJ_T0079376.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95008279 95016758 - Nup210 protein_coding retained_intron MGP_C57BL6NJ_T0079377.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95008458 95015301 - Nup210 protein_coding processed_transcript MGP_C57BL6NJ_T0079378.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95017831 95021510 - Nup210 protein_coding retained_intron MGP_C57BL6NJ_T0079379.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95043670 95044709 - Nup210 protein_coding processed_transcript MGP_C57BL6NJ_T0079380.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95052794 95059389 - Nup210 protein_coding processed_transcript MGP_C57BL6NJ_T0079381.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95082393 95095215 - Nup210 protein_coding retained_intron MGP_C57BL6NJ_T0079382.1 MGP_C57BL6NJ_G0031481.1 mouse_genomes_project 6 95113694 95116134 - Nup210 protein_coding retained_intron MGP_C57BL6NJ_T0103231.1 MGP_C57BL6NJ_G0041025.1 mouse_genomes_project 6 33264041 33282217 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0080790.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134384314 134414789 + MGP_C57BL6NJ_P0080790 Parp11 protein_coding protein_coding MGP_C57BL6NJ_T0080791.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134388671 134408684 + Parp11 protein_coding retained_intron MGP_C57BL6NJ_T0080792.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134388699 134414740 + MGP_C57BL6NJ_P0080792 Parp11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080793.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134388717 134407582 + Parp11 protein_coding retained_intron MGP_C57BL6NJ_T0080794.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134388726 134415711 + MGP_C57BL6NJ_P0080794 Parp11 protein_coding protein_coding MGP_C57BL6NJ_T0080795.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134388852 134435620 + MGP_C57BL6NJ_P0080795 Parp11 protein_coding protein_coding MGP_C57BL6NJ_T0080796.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134408182 134409941 + Parp11 protein_coding retained_intron MGP_C57BL6NJ_T0080797.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134410801 134415602 + Parp11 protein_coding retained_intron MGP_C57BL6NJ_T0080798.1 MGP_C57BL6NJ_G0031749.1 mouse_genomes_project 6 134414310 134431422 + Parp11 protein_coding retained_intron MGP_C57BL6NJ_T0103306.1 MGP_C57BL6NJ_G0041099.1 mouse_genomes_project 6 140749436 140750370 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002278.1 MGP_C57BL6NJ_G0002168.1 mouse_genomes_project 6 131404666 131404964 - TEC TEC MGP_C57BL6NJ_T0008928.1 MGP_C57BL6NJ_G0007216.1 mouse_genomes_project 6 142641804 142644252 - Gm43949 lincRNA lincRNA MGP_C57BL6NJ_T0005245.1 MGP_C57BL6NJ_G0004471.1 mouse_genomes_project 6 132242813 132246129 + Gm28809 antisense antisense MGP_C57BL6NJ_T0005246.1 MGP_C57BL6NJ_G0004471.1 mouse_genomes_project 6 132243394 132245018 + Gm28809 antisense antisense MGP_C57BL6NJ_T0079963.1 MGP_C57BL6NJ_G0031589.1 mouse_genomes_project 6 121217760 121230409 - MGP_C57BL6NJ_P0079963 Mkrn2os protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079964.1 MGP_C57BL6NJ_G0031589.1 mouse_genomes_project 6 121219338 121230436 - MGP_C57BL6NJ_P0079964 Mkrn2os protein_coding protein_coding MGP_C57BL6NJ_T0079593.1 MGP_C57BL6NJ_G0031522.1 mouse_genomes_project 6 104221005 104223393 + MGP_C57BL6NJ_P0079593 Gpr27 protein_coding protein_coding MGP_C57BL6NJ_T0077133.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28051961 28062955 - Kcp protein_coding retained_intron MGP_C57BL6NJ_T0077134.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28060846 28063671 - MGP_C57BL6NJ_P0077134 Kcp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077135.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28060846 28074761 - MGP_C57BL6NJ_P0077135 Kcp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077136.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28060846 28086784 - MGP_C57BL6NJ_P0077136 Kcp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077137.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28061055 28086773 - MGP_C57BL6NJ_P0077137 Kcp protein_coding protein_coding MGP_C57BL6NJ_T0077138.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28062503 28063783 - Kcp protein_coding retained_intron MGP_C57BL6NJ_T0077139.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28075691 28077455 - Kcp protein_coding retained_intron MGP_C57BL6NJ_T0077140.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28076776 28081671 - MGP_C57BL6NJ_P0077140 Kcp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077141.1 MGP_C57BL6NJ_G0030963.1 mouse_genomes_project 6 28081136 28086799 - MGP_C57BL6NJ_P0077141 Kcp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015699.1 MGP_C57BL6NJ_G0013744.1 mouse_genomes_project 6 31410505 31410747 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016101.1 MGP_C57BL6NJ_G0014146.1 mouse_genomes_project 6 158223898 158224310 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076802.1 MGP_C57BL6NJ_G0030895.1 mouse_genomes_project 6 10673075 10747727 - MGP_C57BL6NJ_P0076802 protein_coding protein_coding MGP_C57BL6NJ_T0076803.1 MGP_C57BL6NJ_G0030895.1 mouse_genomes_project 6 10690961 10693726 - protein_coding retained_intron MGP_C57BL6NJ_T0076804.1 MGP_C57BL6NJ_G0030895.1 mouse_genomes_project 6 10703878 10747727 - MGP_C57BL6NJ_P0076804 protein_coding protein_coding MGP_C57BL6NJ_T0076805.1 MGP_C57BL6NJ_G0030895.1 mouse_genomes_project 6 10715218 10729551 - protein_coding retained_intron MGP_C57BL6NJ_T0002836.1 MGP_C57BL6NJ_G0002695.1 mouse_genomes_project 6 41081428 41082109 - MGP_C57BL6NJ_P0002836 Trbv31 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002837.1 MGP_C57BL6NJ_G0002695.1 mouse_genomes_project 6 41081430 41082190 - MGP_C57BL6NJ_P0002837 Trbv31 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0077856.1 MGP_C57BL6NJ_G0031133.1 mouse_genomes_project 6 48638184 48641135 - Rarres2 protein_coding retained_intron MGP_C57BL6NJ_T0077857.1 MGP_C57BL6NJ_G0031133.1 mouse_genomes_project 6 48638184 48641177 - MGP_C57BL6NJ_P0077857 Rarres2 protein_coding protein_coding MGP_C57BL6NJ_T0077858.1 MGP_C57BL6NJ_G0031133.1 mouse_genomes_project 6 48638184 48641244 - MGP_C57BL6NJ_P0077858 Rarres2 protein_coding protein_coding MGP_C57BL6NJ_T0077859.1 MGP_C57BL6NJ_G0031133.1 mouse_genomes_project 6 48638184 48641276 - MGP_C57BL6NJ_P0077859 Rarres2 protein_coding protein_coding MGP_C57BL6NJ_T0077860.1 MGP_C57BL6NJ_G0031133.1 mouse_genomes_project 6 48638198 48641278 - MGP_C57BL6NJ_P0077860 Rarres2 protein_coding protein_coding MGP_C57BL6NJ_T0077338.1 MGP_C57BL6NJ_G0030993.1 mouse_genomes_project 6 33185079 33190667 - protein_coding retained_intron MGP_C57BL6NJ_T0077339.1 MGP_C57BL6NJ_G0030993.1 mouse_genomes_project 6 33187506 33200629 - MGP_C57BL6NJ_P0077339 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077340.1 MGP_C57BL6NJ_G0030993.1 mouse_genomes_project 6 33190832 33200651 - protein_coding retained_intron MGP_C57BL6NJ_T0077341.1 MGP_C57BL6NJ_G0030993.1 mouse_genomes_project 6 33193002 33200640 - protein_coding retained_intron MGP_C57BL6NJ_T0077342.1 MGP_C57BL6NJ_G0030993.1 mouse_genomes_project 6 33193814 33200669 - MGP_C57BL6NJ_P0077342 protein_coding protein_coding MGP_C57BL6NJ_T0018754.1 MGP_C57BL6NJ_G0016032.1 mouse_genomes_project 6 75094250 75100318 + Gm20536 processed_transcript processed_transcript MGP_C57BL6NJ_T0008774.1 MGP_C57BL6NJ_G0007093.1 mouse_genomes_project 6 51682222 51695340 - Gm26677 lincRNA lincRNA MGP_C57BL6NJ_T0016055.1 MGP_C57BL6NJ_G0014100.1 mouse_genomes_project 6 140040276 140040493 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002048.1 MGP_C57BL6NJ_G0001939.1 mouse_genomes_project 6 1296594 1298386 + TEC TEC MGP_C57BL6NJ_T0078117.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 54982163 55059612 + MGP_C57BL6NJ_P0078117 Wipf3 protein_coding protein_coding MGP_C57BL6NJ_T0078118.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 54982163 55059612 + MGP_C57BL6NJ_P0078118 Wipf3 protein_coding protein_coding MGP_C57BL6NJ_T0078119.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 55006899 55059615 + MGP_C57BL6NJ_P0078119 Wipf3 protein_coding protein_coding MGP_C57BL6NJ_T0078120.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 55006899 55059615 + MGP_C57BL6NJ_P0078120 Wipf3 protein_coding protein_coding MGP_C57BL6NJ_T0078121.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 55026670 55040066 + Wipf3 protein_coding processed_transcript MGP_C57BL6NJ_T0078122.1 MGP_C57BL6NJ_G0031196.1 mouse_genomes_project 6 55043718 55047389 + Wipf3 protein_coding retained_intron MGP_C57BL6NJ_T0005075.1 MGP_C57BL6NJ_G0004351.1 mouse_genomes_project 6 16230444 16233646 + Gm15594 antisense antisense MGP_C57BL6NJ_T0002201.1 MGP_C57BL6NJ_G0002092.1 mouse_genomes_project 6 91561569 91562434 - TEC TEC MGP_C57BL6NJ_T0015995.1 MGP_C57BL6NJ_G0014040.1 mouse_genomes_project 6 128952289 128952480 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000062.1 MGP_C57BL6NJ_G0000050.1 mouse_genomes_project 6 42541550 42542011 + MGP_C57BL6NJ_P0000062 Gm17472 IG_LV_gene IG_LV_gene MGP_C57BL6NJ_T0077515.1 MGP_C57BL6NJ_G0031027.1 mouse_genomes_project 6 37914734 37934570 + MGP_C57BL6NJ_P0077515 Clec2l protein_coding protein_coding MGP_C57BL6NJ_T0079495.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98792459 98888078 - MGP_C57BL6NJ_P0079495 Lrig1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079496.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98792464 98888065 - MGP_C57BL6NJ_P0079496 Lrig1 protein_coding protein_coding MGP_C57BL6NJ_T0079497.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98792466 98888057 - MGP_C57BL6NJ_P0079497 Lrig1 protein_coding protein_coding MGP_C57BL6NJ_T0079498.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98792610 98793324 - Lrig1 protein_coding processed_transcript MGP_C57BL6NJ_T0079499.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98812955 98868550 - Lrig1 protein_coding processed_transcript MGP_C57BL6NJ_T0079500.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98814371 98843445 - Lrig1 protein_coding processed_transcript MGP_C57BL6NJ_T0079501.1 MGP_C57BL6NJ_G0031504.1 mouse_genomes_project 6 98815996 98866785 - Lrig1 protein_coding processed_transcript MGP_C57BL6NJ_T0080540.1 MGP_C57BL6NJ_G0031701.1 mouse_genomes_project 6 131463559 131473073 - MGP_C57BL6NJ_P0080540 Lrrc23 protein_coding protein_coding MGP_C57BL6NJ_T0080541.1 MGP_C57BL6NJ_G0031701.1 mouse_genomes_project 6 131463565 131473082 - MGP_C57BL6NJ_P0080541 Lrrc23 protein_coding protein_coding MGP_C57BL6NJ_T0080542.1 MGP_C57BL6NJ_G0031701.1 mouse_genomes_project 6 131464301 131467965 - Lrrc23 protein_coding retained_intron MGP_C57BL6NJ_T0080543.1 MGP_C57BL6NJ_G0031701.1 mouse_genomes_project 6 131471616 131473072 - MGP_C57BL6NJ_P0080543 Lrrc23 protein_coding protein_coding MGP_C57BL6NJ_T0080544.1 MGP_C57BL6NJ_G0031701.1 mouse_genomes_project 6 131472255 131473059 - MGP_C57BL6NJ_P0080544 Lrrc23 protein_coding protein_coding MGP_C57BL6NJ_T0077651.1 MGP_C57BL6NJ_G0031071.1 mouse_genomes_project 6 41224422 41243196 - MGP_C57BL6NJ_P0077651 Kel protein_coding protein_coding MGP_C57BL6NJ_T0077652.1 MGP_C57BL6NJ_G0031071.1 mouse_genomes_project 6 41224427 41226089 - MGP_C57BL6NJ_P0077652 Kel protein_coding protein_coding MGP_C57BL6NJ_T0077653.1 MGP_C57BL6NJ_G0031071.1 mouse_genomes_project 6 41224446 41225948 - Kel protein_coding processed_transcript MGP_C57BL6NJ_T0077654.1 MGP_C57BL6NJ_G0031071.1 mouse_genomes_project 6 41226115 41238025 - MGP_C57BL6NJ_P0077654 Kel protein_coding protein_coding MGP_C57BL6NJ_T0077655.1 MGP_C57BL6NJ_G0031071.1 mouse_genomes_project 6 41226530 41227056 - Kel protein_coding retained_intron MGP_C57BL6NJ_T0078854.1 MGP_C57BL6NJ_G0031378.1 mouse_genomes_project 6 87143074 87148757 + MGP_C57BL6NJ_P0078854 Ankrd53 protein_coding protein_coding MGP_C57BL6NJ_T0078855.1 MGP_C57BL6NJ_G0031378.1 mouse_genomes_project 6 87143116 87148468 + MGP_C57BL6NJ_P0078855 Ankrd53 protein_coding protein_coding MGP_C57BL6NJ_T0078970.1 MGP_C57BL6NJ_G0031396.1 mouse_genomes_project 6 89066122 89068591 - MGP_C57BL6NJ_P0078970 Egr4 protein_coding protein_coding MGP_C57BL6NJ_T0011052.1 MGP_C57BL6NJ_G0009137.1 mouse_genomes_project 6 120700834 120700929 + Gm24767 miRNA miRNA MGP_C57BL6NJ_T0015643.1 MGP_C57BL6NJ_G0013688.1 mouse_genomes_project 6 5698341 5699588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015670.1 MGP_C57BL6NJ_G0013715.1 mouse_genomes_project 6 17666560 17667858 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079408.1 MGP_C57BL6NJ_G0031487.1 mouse_genomes_project 6 95506987 95533571 - MGP_C57BL6NJ_P0079408 Xpc protein_coding protein_coding MGP_C57BL6NJ_T0079409.1 MGP_C57BL6NJ_G0031487.1 mouse_genomes_project 6 95509955 95533478 - MGP_C57BL6NJ_P0079409 Xpc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079410.1 MGP_C57BL6NJ_G0031487.1 mouse_genomes_project 6 95524598 95533567 - MGP_C57BL6NJ_P0079410 Xpc protein_coding protein_coding MGP_C57BL6NJ_T0078043.1 MGP_C57BL6NJ_G0031182.1 mouse_genomes_project 6 52591982 52597885 - MGP_C57BL6NJ_P0078043 Hoxa7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078044.1 MGP_C57BL6NJ_G0031182.1 mouse_genomes_project 6 52591989 52594997 - MGP_C57BL6NJ_P0078044 Hoxa7 protein_coding protein_coding MGP_C57BL6NJ_T0078045.1 MGP_C57BL6NJ_G0031182.1 mouse_genomes_project 6 52593244 52596203 - MGP_C57BL6NJ_P0078045 Hoxa7 protein_coding protein_coding MGP_C57BL6NJ_T0078046.1 MGP_C57BL6NJ_G0031182.1 mouse_genomes_project 6 52593500 52599344 - MGP_C57BL6NJ_P0078046 Hoxa7 protein_coding protein_coding MGP_C57BL6NJ_T0078047.1 MGP_C57BL6NJ_G0031182.1 mouse_genomes_project 6 52593931 52594944 - MGP_C57BL6NJ_P0078047 Hoxa7 protein_coding protein_coding MGP_C57BL6NJ_T0005263.1 MGP_C57BL6NJ_G0004485.1 mouse_genomes_project 6 142241997 142252551 - Gm17089 antisense antisense MGP_C57BL6NJ_T0000298.1 MGP_C57BL6NJ_G0000223.1 mouse_genomes_project 6 72951060 72951650 + MGP_C57BL6NJ_P0000298 Igkv3-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0081016.1 MGP_C57BL6NJ_G0031822.1 mouse_genomes_project 6 140409109 140411458 - A630073D07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0081017.1 MGP_C57BL6NJ_G0031822.1 mouse_genomes_project 6 140409109 140411510 - MGP_C57BL6NJ_P0081017 A630073D07Rik protein_coding protein_coding MGP_C57BL6NJ_T0079700.1 MGP_C57BL6NJ_G0031546.1 mouse_genomes_project 6 117919180 117932964 + MGP_C57BL6NJ_P0079700 Cav3 protein_coding protein_coding MGP_C57BL6NJ_T0008811.1 MGP_C57BL6NJ_G0007123.1 mouse_genomes_project 6 74429868 74463328 - 9130221F21Rik lincRNA lincRNA MGP_C57BL6NJ_T0081122.1 MGP_C57BL6NJ_G0031861.1 mouse_genomes_project 6 143493784 143494929 - MGP_C57BL6NJ_P0081122 protein_coding protein_coding MGP_C57BL6NJ_T0080961.1 MGP_C57BL6NJ_G0031794.1 mouse_genomes_project 6 136832841 136886139 - MGP_C57BL6NJ_P0080961 Klrc1 protein_coding protein_coding MGP_C57BL6NJ_T0080962.1 MGP_C57BL6NJ_G0031794.1 mouse_genomes_project 6 136879525 136886139 - MGP_C57BL6NJ_P0080962 Klrc1 protein_coding protein_coding MGP_C57BL6NJ_T0080963.1 MGP_C57BL6NJ_G0031794.1 mouse_genomes_project 6 136879525 136886094 - MGP_C57BL6NJ_P0080963 Klrc1 protein_coding protein_coding MGP_C57BL6NJ_T0080964.1 MGP_C57BL6NJ_G0031794.1 mouse_genomes_project 6 136879526 136886076 - MGP_C57BL6NJ_P0080964 Klrc1 protein_coding protein_coding MGP_C57BL6NJ_T0081040.1 MGP_C57BL6NJ_G0031842.1 mouse_genomes_project 6 141235272 141238853 + MGP_C57BL6NJ_P0081040 5530400C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0016095.1 MGP_C57BL6NJ_G0014140.1 mouse_genomes_project 6 156108797 156109256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000282.1 MGP_C57BL6NJ_G0000210.1 mouse_genomes_project 6 72371391 72530763 - MGP_C57BL6NJ_P0000282 Igkv8-24 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101782.1 MGP_C57BL6NJ_G0039828.1 mouse_genomes_project 6 27790963 27791094 + Gm26021 snoRNA snoRNA MGP_C57BL6NJ_T0008938.1 MGP_C57BL6NJ_G0007221.1 mouse_genomes_project 6 147870020 147877000 - 4922502N22Rik lincRNA lincRNA MGP_C57BL6NJ_T0002173.1 MGP_C57BL6NJ_G0002064.1 mouse_genomes_project 6 83518119 83520647 + TEC TEC MGP_C57BL6NJ_T0081054.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142467991 142598071 - MGP_C57BL6NJ_P0081054 Lrp6 protein_coding protein_coding MGP_C57BL6NJ_T0081055.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142471998 142492781 - Lrp6 protein_coding retained_intron MGP_C57BL6NJ_T0081056.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142483278 142486496 - Lrp6 protein_coding retained_intron MGP_C57BL6NJ_T0081057.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142483913 142489249 - Lrp6 protein_coding retained_intron MGP_C57BL6NJ_T0081058.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142534182 142598123 - MGP_C57BL6NJ_P0081058 Lrp6 protein_coding protein_coding MGP_C57BL6NJ_T0081059.1 MGP_C57BL6NJ_G0031846.1 mouse_genomes_project 6 142568587 142569528 - Lrp6 protein_coding retained_intron MGP_C57BL6NJ_T0078134.1 MGP_C57BL6NJ_G0031199.1 mouse_genomes_project 6 55161697 55218238 + MGP_C57BL6NJ_P0078134 Plekha8 protein_coding protein_coding MGP_C57BL6NJ_T0078136.1 MGP_C57BL6NJ_G0031199.1 mouse_genomes_project 6 55171032 55210947 + MGP_C57BL6NJ_P0078136 Plekha8 protein_coding protein_coding MGP_C57BL6NJ_T0099495.1 MGP_C57BL6NJ_G0037548.1 mouse_genomes_project 6 47979474 47979882 - sense_intronic sense_intronic MGP_C57BL6NJ_T0077898.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48817743 48822435 + MGP_C57BL6NJ_P0077898 Gimap1 protein_coding protein_coding MGP_C57BL6NJ_T0077900.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48817762 48821407 + MGP_C57BL6NJ_P0077900 Gimap1 protein_coding protein_coding MGP_C57BL6NJ_T0077901.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48817765 48822439 + MGP_C57BL6NJ_P0077901 Gimap1 protein_coding protein_coding MGP_C57BL6NJ_T0077902.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48817776 48818719 + Gimap1 protein_coding retained_intron MGP_C57BL6NJ_T0077903.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48817796 48820480 + Gimap1 protein_coding retained_intron MGP_C57BL6NJ_T0077904.1 MGP_C57BL6NJ_G0031146.1 mouse_genomes_project 6 48820865 48822440 + Gimap1 protein_coding retained_intron MGP_C57BL6NJ_T0015882.1 MGP_C57BL6NJ_G0013927.1 mouse_genomes_project 6 88553734 88554128 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080982.1 MGP_C57BL6NJ_G0031805.1 mouse_genomes_project 6 137664277 137695492 - MGP_C57BL6NJ_P0080982 protein_coding protein_coding MGP_C57BL6NJ_T0011928.1 MGP_C57BL6NJ_G0010013.1 mouse_genomes_project 6 117052540 117052836 + Gm24005 misc_RNA misc_RNA MGP_C57BL6NJ_T0103258.1 MGP_C57BL6NJ_G0041052.1 mouse_genomes_project 6 59147422 59148348 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000447.1 MGP_C57BL6NJ_G0000366.1 mouse_genomes_project 6 71716947 71718729 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0077031.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 25695506 26626802 - MGP_C57BL6NJ_P0077031 Grm8 protein_coding protein_coding MGP_C57BL6NJ_T0077032.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 25695515 26618477 - MGP_C57BL6NJ_P0077032 Grm8 protein_coding protein_coding MGP_C57BL6NJ_T0077033.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 25695999 26618547 - MGP_C57BL6NJ_P0077033 Grm8 protein_coding protein_coding MGP_C57BL6NJ_T0077034.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 26078522 26627420 - MGP_C57BL6NJ_P0077034 Grm8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077035.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 26227399 26625677 - MGP_C57BL6NJ_P0077035 Grm8 protein_coding protein_coding MGP_C57BL6NJ_T0077036.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 26413271 26627435 - Grm8 protein_coding processed_transcript MGP_C57BL6NJ_T0077037.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 26618415 26625481 - MGP_C57BL6NJ_P0077037 Grm8 protein_coding protein_coding MGP_C57BL6NJ_T0077038.1 MGP_C57BL6NJ_G0030942.1 mouse_genomes_project 6 26624379 26626642 - Grm8 protein_coding processed_transcript MGP_C57BL6NJ_T0015640.1 MGP_C57BL6NJ_G0013685.1 mouse_genomes_project 6 4905575 4905765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078123.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55057019 55065192 - MGP_C57BL6NJ_P0078123 Scrn1 protein_coding protein_coding MGP_C57BL6NJ_T0078124.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55061736 55126490 - MGP_C57BL6NJ_P0078124 Scrn1 protein_coding protein_coding MGP_C57BL6NJ_T0078125.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55062111 55078038 - MGP_C57BL6NJ_P0078125 Scrn1 protein_coding protein_coding MGP_C57BL6NJ_T0078126.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55064938 55070648 - Scrn1 protein_coding retained_intron MGP_C57BL6NJ_T0078127.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55092973 55112899 - MGP_C57BL6NJ_P0078127 Scrn1 protein_coding protein_coding MGP_C57BL6NJ_T0078128.1 MGP_C57BL6NJ_G0031197.1 mouse_genomes_project 6 55110161 55112890 - Scrn1 protein_coding processed_transcript MGP_C57BL6NJ_T0077751.1 MGP_C57BL6NJ_G0031111.1 mouse_genomes_project 6 42844752 42845808 + MGP_C57BL6NJ_P0077751 Olfr434 protein_coding protein_coding MGP_C57BL6NJ_T0077752.1 MGP_C57BL6NJ_G0031111.1 mouse_genomes_project 6 42844780 42845983 + MGP_C57BL6NJ_P0077752 Olfr434 protein_coding protein_coding MGP_C57BL6NJ_T0015925.1 MGP_C57BL6NJ_G0013970.1 mouse_genomes_project 6 105825366 105825606 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015945.1 MGP_C57BL6NJ_G0013990.1 mouse_genomes_project 6 114630057 114630505 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015845.1 MGP_C57BL6NJ_G0013890.1 mouse_genomes_project 6 72665943 72667289 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015677.1 MGP_C57BL6NJ_G0013722.1 mouse_genomes_project 6 20829371 20830880 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008944.1 MGP_C57BL6NJ_G0007226.1 mouse_genomes_project 6 151855816 151856203 + 4930434O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0002819.1 MGP_C57BL6NJ_G0002682.1 mouse_genomes_project 6 40586962 40587399 + MGP_C57BL6NJ_P0002819 Trbv13-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0078031.1 MGP_C57BL6NJ_G0031174.1 mouse_genomes_project 6 52528564 52531292 - MGP_C57BL6NJ_P0078031 Hoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0078032.1 MGP_C57BL6NJ_G0031174.1 mouse_genomes_project 6 52528569 52531292 - MGP_C57BL6NJ_P0078032 Hoxa1 protein_coding protein_coding MGP_C57BL6NJ_T0015912.1 MGP_C57BL6NJ_G0013957.1 mouse_genomes_project 6 99466221 99470436 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077147.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28126231 28200036 - MGP_C57BL6NJ_P0077147 Tnpo3 protein_coding protein_coding MGP_C57BL6NJ_T0077148.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28126231 28199756 - MGP_C57BL6NJ_P0077148 Tnpo3 protein_coding protein_coding MGP_C57BL6NJ_T0077149.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28126386 28145743 - MGP_C57BL6NJ_P0077149 Tnpo3 protein_coding protein_coding MGP_C57BL6NJ_T0077151.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28126974 28199960 - MGP_C57BL6NJ_P0077151 Tnpo3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077152.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28140531 28142714 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077153.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28150525 28199772 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077154.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28157721 28160807 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077155.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28168710 28172531 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077156.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28170211 28199968 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077157.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28173487 28199783 - Tnpo3 protein_coding retained_intron MGP_C57BL6NJ_T0077158.1 MGP_C57BL6NJ_G0030965.1 mouse_genomes_project 6 28179232 28199762 - Tnpo3 protein_coding processed_transcript MGP_C57BL6NJ_T0079166.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91601841 91610332 - MGP_C57BL6NJ_P0079166 Cnbp protein_coding protein_coding MGP_C57BL6NJ_T0079167.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91601841 91610332 - MGP_C57BL6NJ_P0079167 Cnbp protein_coding protein_coding MGP_C57BL6NJ_T0079168.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91602308 91610306 - MGP_C57BL6NJ_P0079168 Cnbp protein_coding protein_coding MGP_C57BL6NJ_T0079169.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91602308 91610256 - MGP_C57BL6NJ_P0079169 Cnbp protein_coding protein_coding MGP_C57BL6NJ_T0079170.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91603113 91610286 - MGP_C57BL6NJ_P0079170 Cnbp protein_coding protein_coding MGP_C57BL6NJ_T0079171.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91603145 91610253 - Cnbp protein_coding retained_intron MGP_C57BL6NJ_T0079172.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91603165 91610248 - Cnbp protein_coding retained_intron MGP_C57BL6NJ_T0079173.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91603226 91610285 - Cnbp protein_coding retained_intron MGP_C57BL6NJ_T0079174.1 MGP_C57BL6NJ_G0031437.1 mouse_genomes_project 6 91604756 91605544 - Cnbp protein_coding retained_intron MGP_C57BL6NJ_T0002879.1 MGP_C57BL6NJ_G0002733.1 mouse_genomes_project 6 40639160 40639454 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0080881.1 MGP_C57BL6NJ_G0031771.1 mouse_genomes_project 6 135887655 135950259 - MGP_C57BL6NJ_P0080881 protein_coding protein_coding MGP_C57BL6NJ_T0080882.1 MGP_C57BL6NJ_G0031771.1 mouse_genomes_project 6 135887655 135950259 - MGP_C57BL6NJ_P0080882 protein_coding protein_coding MGP_C57BL6NJ_T0080883.1 MGP_C57BL6NJ_G0031771.1 mouse_genomes_project 6 135887734 135950226 - MGP_C57BL6NJ_P0080883 protein_coding protein_coding MGP_C57BL6NJ_T0080884.1 MGP_C57BL6NJ_G0031771.1 mouse_genomes_project 6 135902984 135950322 - MGP_C57BL6NJ_P0080884 protein_coding protein_coding MGP_C57BL6NJ_T0078275.1 MGP_C57BL6NJ_G0031253.1 mouse_genomes_project 6 59333656 59334709 - MGP_C57BL6NJ_P0078275 Vmn1r30 protein_coding protein_coding MGP_C57BL6NJ_T0011001.1 MGP_C57BL6NJ_G0009086.1 mouse_genomes_project 6 26415549 26415645 - Mir592 miRNA miRNA MGP_C57BL6NJ_T0077392.1 MGP_C57BL6NJ_G0031001.1 mouse_genomes_project 6 33800473 33806721 - MGP_C57BL6NJ_P0077392 3110062M04Rik protein_coding protein_coding MGP_C57BL6NJ_T0077393.1 MGP_C57BL6NJ_G0031001.1 mouse_genomes_project 6 33800542 33806760 - MGP_C57BL6NJ_P0077393 3110062M04Rik protein_coding protein_coding MGP_C57BL6NJ_T0077395.1 MGP_C57BL6NJ_G0031001.1 mouse_genomes_project 6 33802397 33806709 - MGP_C57BL6NJ_P0077395 3110062M04Rik protein_coding protein_coding MGP_C57BL6NJ_T0077396.1 MGP_C57BL6NJ_G0031001.1 mouse_genomes_project 6 33803348 33805829 - MGP_C57BL6NJ_P0077396 3110062M04Rik protein_coding protein_coding MGP_C57BL6NJ_T0077397.1 MGP_C57BL6NJ_G0031001.1 mouse_genomes_project 6 33804048 33805680 - 3110062M04Rik protein_coding retained_intron MGP_C57BL6NJ_T0015704.1 MGP_C57BL6NJ_G0013749.1 mouse_genomes_project 6 34932315 34932729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078175.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56085379 56132245 + MGP_C57BL6NJ_P0078175 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078176.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56085429 56134791 + MGP_C57BL6NJ_P0078176 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078177.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56085458 56111550 + MGP_C57BL6NJ_P0078177 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078178.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56085578 56093621 + MGP_C57BL6NJ_P0078178 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078179.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56093611 56130511 + MGP_C57BL6NJ_P0078179 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078180.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56093611 56130768 + MGP_C57BL6NJ_P0078180 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078181.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56093611 56130511 + MGP_C57BL6NJ_P0078181 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0078182.1 MGP_C57BL6NJ_G0031210.1 mouse_genomes_project 6 56093611 56130511 + MGP_C57BL6NJ_P0078182 Adcyap1r1 protein_coding protein_coding MGP_C57BL6NJ_T0081129.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 143913858 144403740 - MGP_C57BL6NJ_P0081129 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081130.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 143931703 144406732 - MGP_C57BL6NJ_P0081130 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081131.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 144078850 144406732 - MGP_C57BL6NJ_P0081131 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081132.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 144267195 144402504 - MGP_C57BL6NJ_P0081132 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081133.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 144267198 144406732 - MGP_C57BL6NJ_P0081133 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081134.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 144267198 144406732 - MGP_C57BL6NJ_P0081134 Grin2b protein_coding protein_coding MGP_C57BL6NJ_T0081135.1 MGP_C57BL6NJ_G0031863.1 mouse_genomes_project 6 144402377 144406598 - Grin2b protein_coding processed_transcript MGP_C57BL6NJ_T0015867.1 MGP_C57BL6NJ_G0013912.1 mouse_genomes_project 6 81427289 81428261 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002823.1 MGP_C57BL6NJ_G0002686.1 mouse_genomes_project 6 40616257 40616748 + MGP_C57BL6NJ_P0002823 Trbv16 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0018736.1 MGP_C57BL6NJ_G0016026.1 mouse_genomes_project 6 58401873 58447267 + processed_transcript processed_transcript MGP_C57BL6NJ_T0015728.1 MGP_C57BL6NJ_G0013773.1 mouse_genomes_project 6 43443041 43443787 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076977.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456190 22068014 - MGP_C57BL6NJ_P0076977 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076978.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456190 22068297 - MGP_C57BL6NJ_P0076978 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076979.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456190 22068298 - MGP_C57BL6NJ_P0076979 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076980.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456240 22068102 - MGP_C57BL6NJ_P0076980 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076981.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456255 22068014 - MGP_C57BL6NJ_P0076981 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076982.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456256 22068101 - MGP_C57BL6NJ_P0076982 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076983.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456260 21557114 - Cadps2 protein_coding processed_transcript MGP_C57BL6NJ_T0076984.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456925 22068020 - MGP_C57BL6NJ_P0076984 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076985.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456925 21784623 - MGP_C57BL6NJ_P0076985 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076986.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21456930 21509463 - Cadps2 protein_coding processed_transcript MGP_C57BL6NJ_T0076987.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21604947 22068140 - MGP_C57BL6NJ_P0076987 Cadps2 protein_coding protein_coding MGP_C57BL6NJ_T0076988.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21778907 22068177 - Cadps2 protein_coding retained_intron MGP_C57BL6NJ_T0076992.1 MGP_C57BL6NJ_G0030925.1 mouse_genomes_project 6 21895657 22068139 - Cadps2 protein_coding retained_intron MGP_C57BL6NJ_T0008807.1 MGP_C57BL6NJ_G0007119.1 mouse_genomes_project 6 73704495 73705145 - Gm44110 lincRNA lincRNA MGP_C57BL6NJ_T0015637.1 MGP_C57BL6NJ_G0013682.1 mouse_genomes_project 6 4575292 4575653 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078745.1 MGP_C57BL6NJ_G0031356.1 mouse_genomes_project 6 86392481 86399053 + MGP_C57BL6NJ_P0078745 Ccdc142 protein_coding protein_coding MGP_C57BL6NJ_T0078747.1 MGP_C57BL6NJ_G0031356.1 mouse_genomes_project 6 86392538 86394735 + Ccdc142 protein_coding retained_intron MGP_C57BL6NJ_T0078748.1 MGP_C57BL6NJ_G0031356.1 mouse_genomes_project 6 86397759 86398493 + Ccdc142 protein_coding retained_intron MGP_C57BL6NJ_T0008760.1 MGP_C57BL6NJ_G0007081.1 mouse_genomes_project 6 47564336 47569375 + Gm26625 lincRNA lincRNA MGP_C57BL6NJ_T0015718.1 MGP_C57BL6NJ_G0013763.1 mouse_genomes_project 6 40494354 40494735 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000235.1 MGP_C57BL6NJ_G0000175.1 mouse_genomes_project 6 70743718 70744248 - MGP_C57BL6NJ_P0000235 Igkv4-90 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0080094.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654405 123659579 + Zfp637 protein_coding retained_intron MGP_C57BL6NJ_T0080095.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654405 123660273 + MGP_C57BL6NJ_P0080095 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080096.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654406 123660580 + MGP_C57BL6NJ_P0080096 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080097.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654467 123661016 + MGP_C57BL6NJ_P0080097 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080098.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654471 123661017 + MGP_C57BL6NJ_P0080098 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080099.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654493 123660474 + MGP_C57BL6NJ_P0080099 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080100.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654493 123660474 + MGP_C57BL6NJ_P0080100 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080101.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654506 123660474 + MGP_C57BL6NJ_P0080101 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080102.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123654506 123661017 + MGP_C57BL6NJ_P0080102 Zfp637 protein_coding protein_coding MGP_C57BL6NJ_T0080103.1 MGP_C57BL6NJ_G0031616.1 mouse_genomes_project 6 123658313 123660636 + Zfp637 protein_coding retained_intron MGP_C57BL6NJ_T0011055.1 MGP_C57BL6NJ_G0009140.1 mouse_genomes_project 6 123766188 123768845 - miRNA miRNA MGP_C57BL6NJ_T0011920.1 MGP_C57BL6NJ_G0010005.1 mouse_genomes_project 6 87073593 87073780 + Gm27772 misc_RNA misc_RNA MGP_C57BL6NJ_T0000055.1 MGP_C57BL6NJ_G0000045.1 mouse_genomes_project 6 73023893 73023931 + MGP_C57BL6NJ_P0000055 Igkj3 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0000056.1 MGP_C57BL6NJ_G0000045.1 mouse_genomes_project 6 73023893 73023929 + Igkj3 IG_J_gene processed_transcript MGP_C57BL6NJ_T0080123.1 MGP_C57BL6NJ_G0031620.1 mouse_genomes_project 6 123920174 123944232 + MGP_C57BL6NJ_P0080123 Rasgef1a protein_coding protein_coding MGP_C57BL6NJ_T0080124.1 MGP_C57BL6NJ_G0031620.1 mouse_genomes_project 6 123920200 123945283 + MGP_C57BL6NJ_P0080124 Rasgef1a protein_coding protein_coding MGP_C57BL6NJ_T0078743.1 MGP_C57BL6NJ_G0031355.1 mouse_genomes_project 6 86374279 86377459 + MGP_C57BL6NJ_P0078743 Lbx2 protein_coding protein_coding MGP_C57BL6NJ_T0078744.1 MGP_C57BL6NJ_G0031355.1 mouse_genomes_project 6 86376553 86377312 + Lbx2 protein_coding processed_transcript MGP_C57BL6NJ_T0015920.1 MGP_C57BL6NJ_G0013965.1 mouse_genomes_project 6 104378623 104379230 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005111.1 MGP_C57BL6NJ_G0004382.1 mouse_genomes_project 6 50801333 50829538 + 5430402O13Rik antisense antisense MGP_C57BL6NJ_T0005112.1 MGP_C57BL6NJ_G0004382.1 mouse_genomes_project 6 50801428 50829495 + 5430402O13Rik antisense antisense MGP_C57BL6NJ_T0077930.1 MGP_C57BL6NJ_G0031152.1 mouse_genomes_project 6 49037031 49040824 + MGP_C57BL6NJ_P0077930 1600015I10Rik protein_coding protein_coding MGP_C57BL6NJ_T0008833.1 MGP_C57BL6NJ_G0007140.1 mouse_genomes_project 6 89640521 89645497 + 4930553P18Rik lincRNA lincRNA MGP_C57BL6NJ_T0000244.1 MGP_C57BL6NJ_G0000181.1 mouse_genomes_project 6 70973376 70973910 - MGP_C57BL6NJ_P0000244 Igkv4-80 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0081030.1 MGP_C57BL6NJ_G0031835.1 mouse_genomes_project 6 140725460 140726397 + MGP_C57BL6NJ_P0081030 Tas2r125 protein_coding protein_coding MGP_C57BL6NJ_T0002877.1 MGP_C57BL6NJ_G0002731.1 mouse_genomes_project 6 40572664 40572924 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0008810.1 MGP_C57BL6NJ_G0007122.1 mouse_genomes_project 6 73826169 73834895 + Gm44172 lincRNA lincRNA MGP_C57BL6NJ_T0011006.1 MGP_C57BL6NJ_G0009091.1 mouse_genomes_project 6 28832795 28832901 - Mir96 miRNA miRNA MGP_C57BL6NJ_T0002177.1 MGP_C57BL6NJ_G0002068.1 mouse_genomes_project 6 85536938 85540947 - TEC TEC MGP_C57BL6NJ_T0005105.1 MGP_C57BL6NJ_G0004377.1 mouse_genomes_project 6 41910827 41920744 + 2010310C07Rik antisense antisense MGP_C57BL6NJ_T0005106.1 MGP_C57BL6NJ_G0004377.1 mouse_genomes_project 6 41918144 41921404 + 2010310C07Rik antisense antisense MGP_C57BL6NJ_T0002810.1 MGP_C57BL6NJ_G0002674.1 mouse_genomes_project 6 40360736 40361393 + MGP_C57BL6NJ_P0002810 Trbv1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101817.1 MGP_C57BL6NJ_G0039863.1 mouse_genomes_project 6 102179256 102179399 + Gm23703 snoRNA snoRNA MGP_C57BL6NJ_T0015864.1 MGP_C57BL6NJ_G0013909.1 mouse_genomes_project 6 79257999 79258474 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000418.1 MGP_C57BL6NJ_G0000337.1 mouse_genomes_project 6 70702056 70702467 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079071.1 MGP_C57BL6NJ_G0031414.1 mouse_genomes_project 6 90202359 90204189 - MGP_C57BL6NJ_P0079071 Pcbp1 protein_coding protein_coding MGP_C57BL6NJ_T0079958.1 MGP_C57BL6NJ_G0031588.1 mouse_genomes_project 6 121177502 121187148 + MGP_C57BL6NJ_P0079958 Tsen2 protein_coding protein_coding MGP_C57BL6NJ_T0079959.1 MGP_C57BL6NJ_G0031588.1 mouse_genomes_project 6 121177502 121212845 + MGP_C57BL6NJ_P0079959 Tsen2 protein_coding protein_coding MGP_C57BL6NJ_T0079960.1 MGP_C57BL6NJ_G0031588.1 mouse_genomes_project 6 121177540 121193986 + Tsen2 protein_coding processed_transcript MGP_C57BL6NJ_T0079961.1 MGP_C57BL6NJ_G0031588.1 mouse_genomes_project 6 121177544 121185237 + Tsen2 protein_coding retained_intron MGP_C57BL6NJ_T0079962.1 MGP_C57BL6NJ_G0031588.1 mouse_genomes_project 6 121208664 121212208 + Tsen2 protein_coding retained_intron MGP_C57BL6NJ_T0005256.1 MGP_C57BL6NJ_G0004480.1 mouse_genomes_project 6 135419484 135438865 - Gm15862 antisense antisense MGP_C57BL6NJ_T0079630.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 110637508 110811286 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0079631.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 110637590 111746145 + MGP_C57BL6NJ_P0079631 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079632.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 110637590 111771754 + MGP_C57BL6NJ_P0079632 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079633.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 110637620 111771759 + MGP_C57BL6NJ_P0079633 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079634.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 110912197 111746151 + MGP_C57BL6NJ_P0079634 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079635.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111119808 111681340 + MGP_C57BL6NJ_P0079635 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079636.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111119961 111584348 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0079637.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111120049 111745368 + MGP_C57BL6NJ_P0079637 Cntn4 protein_coding protein_coding MGP_C57BL6NJ_T0079638.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111120098 111368063 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0079639.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111572458 111770205 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0079640.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111724862 111771641 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0079641.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111751248 111752221 + Cntn4 protein_coding retained_intron MGP_C57BL6NJ_T0079642.1 MGP_C57BL6NJ_G0031532.1 mouse_genomes_project 6 111766601 111770349 + Cntn4 protein_coding processed_transcript MGP_C57BL6NJ_T0005264.1 MGP_C57BL6NJ_G0004486.1 mouse_genomes_project 6 142321932 142423494 - Gm44293 antisense antisense MGP_C57BL6NJ_T0080344.1 MGP_C57BL6NJ_G0031656.1 mouse_genomes_project 6 127493390 127605922 - MGP_C57BL6NJ_P0080344 Iqsec3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080345.1 MGP_C57BL6NJ_G0031656.1 mouse_genomes_project 6 127493390 127605880 - MGP_C57BL6NJ_P0080345 Iqsec3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080346.1 MGP_C57BL6NJ_G0031656.1 mouse_genomes_project 6 127493390 127605935 - MGP_C57BL6NJ_P0080346 Iqsec3 protein_coding protein_coding MGP_C57BL6NJ_T0080347.1 MGP_C57BL6NJ_G0031656.1 mouse_genomes_project 6 127500280 127605820 - MGP_C57BL6NJ_P0080347 Iqsec3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080348.1 MGP_C57BL6NJ_G0031656.1 mouse_genomes_project 6 127531455 127605935 - MGP_C57BL6NJ_P0080348 Iqsec3 protein_coding protein_coding MGP_C57BL6NJ_T0002192.1 MGP_C57BL6NJ_G0002083.1 mouse_genomes_project 6 90585576 90587267 + TEC TEC MGP_C57BL6NJ_T0008793.1 MGP_C57BL6NJ_G0007107.1 mouse_genomes_project 6 58095201 59421834 - lincRNA lincRNA MGP_C57BL6NJ_T0015840.1 MGP_C57BL6NJ_G0013885.1 mouse_genomes_project 6 70262741 70264252 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103299.1 MGP_C57BL6NJ_G0041092.1 mouse_genomes_project 6 140185126 140197273 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079401.1 MGP_C57BL6NJ_G0031485.1 mouse_genomes_project 6 95479888 95491229 - MGP_C57BL6NJ_P0079401 Chchd4 protein_coding protein_coding MGP_C57BL6NJ_T0079402.1 MGP_C57BL6NJ_G0031485.1 mouse_genomes_project 6 95489278 95491132 - Chchd4 protein_coding retained_intron MGP_C57BL6NJ_T0005153.1 MGP_C57BL6NJ_G0004411.1 mouse_genomes_project 6 86460431 86467013 - Gm15624 antisense antisense MGP_C57BL6NJ_T0005154.1 MGP_C57BL6NJ_G0004411.1 mouse_genomes_project 6 86463633 86467035 - Gm15624 antisense antisense MGP_C57BL6NJ_T0005155.1 MGP_C57BL6NJ_G0004411.1 mouse_genomes_project 6 86464083 86466834 - Gm15624 antisense antisense MGP_C57BL6NJ_T0015905.1 MGP_C57BL6NJ_G0013950.1 mouse_genomes_project 6 98495644 98496408 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002231.1 MGP_C57BL6NJ_G0002122.1 mouse_genomes_project 6 97577064 97577547 - TEC TEC MGP_C57BL6NJ_T0078233.1 MGP_C57BL6NJ_G0031229.1 mouse_genomes_project 6 57986612 57987515 + MGP_C57BL6NJ_P0078233 Vmn1r13 protein_coding protein_coding MGP_C57BL6NJ_T0002251.1 MGP_C57BL6NJ_G0002142.1 mouse_genomes_project 6 108418401 108421863 + TEC TEC MGP_C57BL6NJ_T0002166.1 MGP_C57BL6NJ_G0002057.1 mouse_genomes_project 6 80637895 80641933 - TEC TEC MGP_C57BL6NJ_T0015735.1 MGP_C57BL6NJ_G0013780.1 mouse_genomes_project 6 46975505 46976639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076941.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012207 20040028 + MGP_C57BL6NJ_P0076941 Ing3 protein_coding protein_coding MGP_C57BL6NJ_T0076942.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012283 20038520 + Ing3 protein_coding retained_intron MGP_C57BL6NJ_T0076943.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012288 20038121 + MGP_C57BL6NJ_P0076943 Ing3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076944.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012291 20038893 + MGP_C57BL6NJ_P0076944 Ing3 protein_coding protein_coding MGP_C57BL6NJ_T0076945.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012304 20034054 + MGP_C57BL6NJ_P0076945 Ing3 protein_coding protein_coding MGP_C57BL6NJ_T0076946.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012319 20037716 + MGP_C57BL6NJ_P0076946 Ing3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076947.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20012654 20030279 + MGP_C57BL6NJ_P0076947 Ing3 protein_coding protein_coding MGP_C57BL6NJ_T0076948.1 MGP_C57BL6NJ_G0030918.1 mouse_genomes_project 6 20014691 20016891 + Ing3 protein_coding retained_intron MGP_C57BL6NJ_T0012118.1 MGP_C57BL6NJ_G0010166.1 mouse_genomes_project 6 136624132 136639643 - MGP_C57BL6NJ_P0012118 Clec7a polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012119.1 MGP_C57BL6NJ_G0010166.1 mouse_genomes_project 6 136624132 136639648 - MGP_C57BL6NJ_P0012119 Clec7a polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012120.1 MGP_C57BL6NJ_G0010166.1 mouse_genomes_project 6 136625567 136639648 - MGP_C57BL6NJ_P0012120 Clec7a polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012121.1 MGP_C57BL6NJ_G0010166.1 mouse_genomes_project 6 136637490 136639650 - Clec7a polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0080934.1 MGP_C57BL6NJ_G0010166.1 mouse_genomes_project 6 136625582 136639556 - MGP_C57BL6NJ_P0080934 Clec7a polymorphic_pseudogene unknown_likely_coding MGP_C57BL6NJ_T0077267.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29443875 29471991 + MGP_C57BL6NJ_P0077267 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077268.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29443875 29459318 + MGP_C57BL6NJ_P0077268 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077269.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29458571 29471995 + MGP_C57BL6NJ_P0077269 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077270.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29460057 29472253 + MGP_C57BL6NJ_P0077270 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077271.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29460109 29477879 + MGP_C57BL6NJ_P0077271 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077272.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29464653 29477879 + MGP_C57BL6NJ_P0077272 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077273.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29464656 29477882 + MGP_C57BL6NJ_P0077273 Mest protein_coding protein_coding MGP_C57BL6NJ_T0077274.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29464658 29465482 + Mest protein_coding processed_transcript MGP_C57BL6NJ_T0077275.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29470198 29472559 + Mest protein_coding retained_intron MGP_C57BL6NJ_T0077276.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29471492 29472557 + Mest protein_coding retained_intron MGP_C57BL6NJ_T0077277.1 MGP_C57BL6NJ_G0030981.1 mouse_genomes_project 6 29471505 29472567 + Mest protein_coding retained_intron MGP_C57BL6NJ_T0016045.1 MGP_C57BL6NJ_G0014090.1 mouse_genomes_project 6 138400004 138401165 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079416.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711525 95792759 + MGP_C57BL6NJ_P0079416 Slc6a6 protein_coding protein_coding MGP_C57BL6NJ_T0079417.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711541 95768869 + Slc6a6 protein_coding processed_transcript MGP_C57BL6NJ_T0079418.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711567 95760638 + Slc6a6 protein_coding retained_intron MGP_C57BL6NJ_T0079419.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711592 95758649 + MGP_C57BL6NJ_P0079419 Slc6a6 protein_coding protein_coding MGP_C57BL6NJ_T0079420.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711600 95758684 + MGP_C57BL6NJ_P0079420 Slc6a6 protein_coding protein_coding MGP_C57BL6NJ_T0079421.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95711621 95727447 + Slc6a6 protein_coding retained_intron MGP_C57BL6NJ_T0079422.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95729794 95758570 + MGP_C57BL6NJ_P0079422 Slc6a6 protein_coding protein_coding MGP_C57BL6NJ_T0079423.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95758665 95778722 + MGP_C57BL6NJ_P0079423 Slc6a6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079424.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95773337 95774784 + Slc6a6 protein_coding retained_intron MGP_C57BL6NJ_T0079425.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95782048 95783863 + Slc6a6 protein_coding retained_intron MGP_C57BL6NJ_T0079426.1 MGP_C57BL6NJ_G0031489.1 mouse_genomes_project 6 95783876 95786471 + Slc6a6 protein_coding retained_intron MGP_C57BL6NJ_T0002128.1 MGP_C57BL6NJ_G0002019.1 mouse_genomes_project 6 54164476 54168333 + TEC TEC MGP_C57BL6NJ_T0015695.1 MGP_C57BL6NJ_G0013740.1 mouse_genomes_project 6 28586951 28588106 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011924.1 MGP_C57BL6NJ_G0010009.1 mouse_genomes_project 6 92223172 92223497 + Gm25178 misc_RNA misc_RNA MGP_C57BL6NJ_T0077129.1 MGP_C57BL6NJ_G0030961.1 mouse_genomes_project 6 28046517 28049312 + MGP_C57BL6NJ_P0077129 Atp6v1f protein_coding protein_coding MGP_C57BL6NJ_T0077130.1 MGP_C57BL6NJ_G0030961.1 mouse_genomes_project 6 28046867 28049312 + MGP_C57BL6NJ_P0077130 Atp6v1f protein_coding protein_coding MGP_C57BL6NJ_T0077131.1 MGP_C57BL6NJ_G0030961.1 mouse_genomes_project 6 28046867 28049312 + MGP_C57BL6NJ_P0077131 Atp6v1f protein_coding protein_coding MGP_C57BL6NJ_T0002055.1 MGP_C57BL6NJ_G0001946.1 mouse_genomes_project 6 2111412 2116467 - TEC TEC MGP_C57BL6NJ_T0080046.1 MGP_C57BL6NJ_G0031603.1 mouse_genomes_project 6 121977543 122055017 + MGP_C57BL6NJ_P0080046 Zfand4 protein_coding protein_coding MGP_C57BL6NJ_T0078648.1 MGP_C57BL6NJ_G0031334.1 mouse_genomes_project 6 81321387 81324494 + MGP_C57BL6NJ_P0078648 Reg3a protein_coding protein_coding MGP_C57BL6NJ_T0015760.1 MGP_C57BL6NJ_G0013805.1 mouse_genomes_project 6 50995342 50996468 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005096.1 MGP_C57BL6NJ_G0004369.1 mouse_genomes_project 6 38334479 38338200 - 1700025N23Rik antisense antisense MGP_C57BL6NJ_T0080935.1 MGP_C57BL6NJ_G0031786.1 mouse_genomes_project 6 136652111 136674021 - MGP_C57BL6NJ_P0080935 Olr1 protein_coding protein_coding MGP_C57BL6NJ_T0080936.1 MGP_C57BL6NJ_G0031786.1 mouse_genomes_project 6 136654533 136673963 - MGP_C57BL6NJ_P0080936 Olr1 protein_coding protein_coding MGP_C57BL6NJ_T0080937.1 MGP_C57BL6NJ_G0031786.1 mouse_genomes_project 6 136654533 136673963 - MGP_C57BL6NJ_P0080937 Olr1 protein_coding protein_coding MGP_C57BL6NJ_T0080938.1 MGP_C57BL6NJ_G0031786.1 mouse_genomes_project 6 136654572 136663729 - MGP_C57BL6NJ_P0080938 Olr1 protein_coding protein_coding MGP_C57BL6NJ_T0080939.1 MGP_C57BL6NJ_G0031786.1 mouse_genomes_project 6 136666762 136674021 - MGP_C57BL6NJ_P0080939 Olr1 protein_coding protein_coding MGP_C57BL6NJ_T0079301.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93206860 93253167 - MGP_C57BL6NJ_P0079301 Plxna1 protein_coding protein_coding MGP_C57BL6NJ_T0079302.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93209561 93248264 - MGP_C57BL6NJ_P0079302 Plxna1 protein_coding protein_coding MGP_C57BL6NJ_T0079303.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93211170 93211636 - Plxna1 protein_coding retained_intron MGP_C57BL6NJ_T0079304.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93213061 93215180 - MGP_C57BL6NJ_P0079304 Plxna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079305.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93220924 93223617 - Plxna1 protein_coding processed_transcript MGP_C57BL6NJ_T0079306.1 MGP_C57BL6NJ_G0031455.1 mouse_genomes_project 6 93225957 93233138 - MGP_C57BL6NJ_P0079306 Plxna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002237.1 MGP_C57BL6NJ_G0002128.1 mouse_genomes_project 6 104826908 104829428 - TEC TEC MGP_C57BL6NJ_T0016073.1 MGP_C57BL6NJ_G0014118.1 mouse_genomes_project 6 143258452 143258827 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081278.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149084846 149266881 + MGP_C57BL6NJ_P0081278 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081279.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149084952 149258134 + MGP_C57BL6NJ_P0081279 Plekha5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081280.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149084953 149255322 + MGP_C57BL6NJ_P0081280 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081281.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149093781 149218036 + MGP_C57BL6NJ_P0081281 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081282.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149181120 149218037 + MGP_C57BL6NJ_P0081282 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081283.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149189561 149255322 + MGP_C57BL6NJ_P0081283 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081284.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149199855 149266881 + Plekha5 protein_coding processed_transcript MGP_C57BL6NJ_T0081285.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149208994 149266881 + MGP_C57BL6NJ_P0081285 Plekha5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081286.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149209020 149222965 + Plekha5 protein_coding processed_transcript MGP_C57BL6NJ_T0081287.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149209024 149266881 + MGP_C57BL6NJ_P0081287 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081288.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149209159 149266881 + MGP_C57BL6NJ_P0081288 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081289.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149233519 149266887 + MGP_C57BL6NJ_P0081289 Plekha5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0081290.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149234351 149245797 + Plekha5 protein_coding retained_intron MGP_C57BL6NJ_T0081291.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149243222 149245804 + Plekha5 protein_coding retained_intron MGP_C57BL6NJ_T0081292.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149243410 149266881 + MGP_C57BL6NJ_P0081292 Plekha5 protein_coding protein_coding MGP_C57BL6NJ_T0081293.1 MGP_C57BL6NJ_G0031892.1 mouse_genomes_project 6 149247881 149251510 + Plekha5 protein_coding retained_intron MGP_C57BL6NJ_T0077191.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700584 28815631 + MGP_C57BL6NJ_P0077191 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077192.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700587 28754096 + MGP_C57BL6NJ_P0077192 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077193.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700598 28815353 + MGP_C57BL6NJ_P0077193 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077194.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700625 28754429 + Nrf1 protein_coding retained_intron MGP_C57BL6NJ_T0077195.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700627 28805312 + MGP_C57BL6NJ_P0077195 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077196.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700638 28750867 + MGP_C57BL6NJ_P0077196 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077197.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700641 28814696 + MGP_C57BL6NJ_P0077197 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077198.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700663 28814691 + MGP_C57BL6NJ_P0077198 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077199.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700668 28790579 + MGP_C57BL6NJ_P0077199 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077200.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700668 28805649 + MGP_C57BL6NJ_P0077200 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077201.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28700747 28744011 + MGP_C57BL6NJ_P0077201 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077202.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28729060 28790224 + MGP_C57BL6NJ_P0077202 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077203.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743861 28805307 + MGP_C57BL6NJ_P0077203 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077204.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743867 28813850 + MGP_C57BL6NJ_P0077204 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077205.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743867 28789856 + MGP_C57BL6NJ_P0077205 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077206.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743867 28789856 + MGP_C57BL6NJ_P0077206 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077207.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743867 28805307 + MGP_C57BL6NJ_P0077207 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0077208.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28743906 28744971 + Nrf1 protein_coding retained_intron MGP_C57BL6NJ_T0077209.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28753303 28775050 + Nrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0077210.1 MGP_C57BL6NJ_G0030970.1 mouse_genomes_project 6 28775038 28801356 + MGP_C57BL6NJ_P0077210 Nrf1 protein_coding protein_coding MGP_C57BL6NJ_T0080248.1 MGP_C57BL6NJ_G0031637.1 mouse_genomes_project 6 126083409 126215071 + MGP_C57BL6NJ_P0080248 Ninj2 protein_coding protein_coding MGP_C57BL6NJ_T0080249.1 MGP_C57BL6NJ_G0031637.1 mouse_genomes_project 6 126208554 126215066 + MGP_C57BL6NJ_P0080249 Ninj2 protein_coding protein_coding MGP_C57BL6NJ_T0081618.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158379298 158386520 + MGP_C57BL6NJ_P0081618 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081619.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158380962 158393677 + MGP_C57BL6NJ_P0081619 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081620.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158380962 158393672 + MGP_C57BL6NJ_P0081620 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081621.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158380965 158387366 + MGP_C57BL6NJ_P0081621 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081622.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158381003 158387366 + MGP_C57BL6NJ_P0081622 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081623.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158381013 158392904 + MGP_C57BL6NJ_P0081623 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081624.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158381023 158393677 + MGP_C57BL6NJ_P0081624 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081625.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158381087 158392919 + MGP_C57BL6NJ_P0081625 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0081626.1 MGP_C57BL6NJ_G0031952.1 mouse_genomes_project 6 158381095 158393677 + MGP_C57BL6NJ_P0081626 Mettl20 protein_coding protein_coding MGP_C57BL6NJ_T0077289.1 MGP_C57BL6NJ_G0030984.1 mouse_genomes_project 6 29677082 29680133 - MGP_C57BL6NJ_P0077289 Klf14 protein_coding protein_coding MGP_C57BL6NJ_T0005268.1 MGP_C57BL6NJ_G0004490.1 mouse_genomes_project 6 143432558 143486407 + Gm44276 antisense antisense MGP_C57BL6NJ_T0005262.1 MGP_C57BL6NJ_G0004484.1 mouse_genomes_project 6 142176460 142179589 - Gm17088 antisense antisense MGP_C57BL6NJ_T0077352.1 MGP_C57BL6NJ_G0030997.1 mouse_genomes_project 6 33386778 33416583 + MGP_C57BL6NJ_P0077352 Bpgm protein_coding protein_coding MGP_C57BL6NJ_T0077353.1 MGP_C57BL6NJ_G0030997.1 mouse_genomes_project 6 33386927 33399652 + Bpgm protein_coding retained_intron MGP_C57BL6NJ_T0077354.1 MGP_C57BL6NJ_G0030997.1 mouse_genomes_project 6 33387023 33398256 + MGP_C57BL6NJ_P0077354 Bpgm protein_coding protein_coding MGP_C57BL6NJ_T0077355.1 MGP_C57BL6NJ_G0030997.1 mouse_genomes_project 6 33387050 33398316 + MGP_C57BL6NJ_P0077355 Bpgm protein_coding protein_coding MGP_C57BL6NJ_T0077356.1 MGP_C57BL6NJ_G0030997.1 mouse_genomes_project 6 33387713 33398417 + MGP_C57BL6NJ_P0077356 Bpgm protein_coding protein_coding MGP_C57BL6NJ_T0080419.1 MGP_C57BL6NJ_G0031673.1 mouse_genomes_project 6 129322185 129343951 + MGP_C57BL6NJ_P0080419 Necap1 protein_coding protein_coding MGP_C57BL6NJ_T0080420.1 MGP_C57BL6NJ_G0031673.1 mouse_genomes_project 6 129322260 129323731 + Necap1 protein_coding processed_transcript MGP_C57BL6NJ_T0080421.1 MGP_C57BL6NJ_G0031673.1 mouse_genomes_project 6 129322282 129330168 + Necap1 protein_coding retained_intron MGP_C57BL6NJ_T0080422.1 MGP_C57BL6NJ_G0031673.1 mouse_genomes_project 6 129322292 129328883 + Necap1 protein_coding retained_intron MGP_C57BL6NJ_T0077743.1 MGP_C57BL6NJ_G0031105.1 mouse_genomes_project 6 42510670 42512104 + MGP_C57BL6NJ_P0077743 Olfr444 protein_coding protein_coding MGP_C57BL6NJ_T0103305.1 MGP_C57BL6NJ_G0041098.1 mouse_genomes_project 6 140717704 140718633 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081028.1 MGP_C57BL6NJ_G0031833.1 mouse_genomes_project 6 140682112 140683114 + MGP_C57BL6NJ_P0081028 Tas2r110 protein_coding protein_coding MGP_C57BL6NJ_T0015671.1 MGP_C57BL6NJ_G0013716.1 mouse_genomes_project 6 17676662 17676769 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079856.1 MGP_C57BL6NJ_G0031570.1 mouse_genomes_project 6 119126947 119130902 - MGP_C57BL6NJ_P0079856 Fancd2os protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079857.1 MGP_C57BL6NJ_G0031570.1 mouse_genomes_project 6 119126948 119130902 - MGP_C57BL6NJ_P0079857 Fancd2os protein_coding protein_coding MGP_C57BL6NJ_T0018693.1 MGP_C57BL6NJ_G0016016.1 mouse_genomes_project 6 14104910 14121253 - Gm43996 processed_transcript lincRNA MGP_C57BL6NJ_T0018694.1 MGP_C57BL6NJ_G0016016.1 mouse_genomes_project 6 14117407 14121207 - Gm43996 processed_transcript retained_intron MGP_C57BL6NJ_T0008784.1 MGP_C57BL6NJ_G0007099.1 mouse_genomes_project 6 52906207 52913839 + 1700094M24Rik lincRNA lincRNA MGP_C57BL6NJ_T0080836.1 MGP_C57BL6NJ_G0031760.1 mouse_genomes_project 6 135413585 135423868 + MGP_C57BL6NJ_P0080836 4933413G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0080837.1 MGP_C57BL6NJ_G0031760.1 mouse_genomes_project 6 135413585 135424531 + MGP_C57BL6NJ_P0080837 4933413G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0018720.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52621859 52627258 + Hoxa11os processed_transcript antisense MGP_C57BL6NJ_T0018721.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52622709 52627236 + Hoxa11os processed_transcript antisense MGP_C57BL6NJ_T0018722.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52623435 52627262 + Hoxa11os processed_transcript antisense MGP_C57BL6NJ_T0018723.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52623455 52627257 + Hoxa11os processed_transcript antisense MGP_C57BL6NJ_T0018724.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52623687 52626847 + Hoxa11os processed_transcript retained_intron MGP_C57BL6NJ_T0018725.1 MGP_C57BL6NJ_G0016022.1 mouse_genomes_project 6 52625888 52627266 + Hoxa11os processed_transcript antisense MGP_C57BL6NJ_T0078427.1 MGP_C57BL6NJ_G0031291.1 mouse_genomes_project 6 73473261 73489529 - MGP_C57BL6NJ_P0078427 Thnsl2 protein_coding protein_coding MGP_C57BL6NJ_T0078428.1 MGP_C57BL6NJ_G0031291.1 mouse_genomes_project 6 73473493 73489437 - MGP_C57BL6NJ_P0078428 Thnsl2 protein_coding protein_coding MGP_C57BL6NJ_T0078429.1 MGP_C57BL6NJ_G0031291.1 mouse_genomes_project 6 73473751 73477072 - MGP_C57BL6NJ_P0078429 Thnsl2 protein_coding protein_coding MGP_C57BL6NJ_T0078430.1 MGP_C57BL6NJ_G0031291.1 mouse_genomes_project 6 73476865 73489421 - Thnsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0015972.1 MGP_C57BL6NJ_G0014017.1 mouse_genomes_project 6 122708332 122708762 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079192.1 MGP_C57BL6NJ_G0031440.1 mouse_genomes_project 6 91743518 91744735 - MGP_C57BL6NJ_P0079192 H1fx protein_coding protein_coding MGP_C57BL6NJ_T0015973.1 MGP_C57BL6NJ_G0014018.1 mouse_genomes_project 6 122736434 122736843 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005266.1 MGP_C57BL6NJ_G0004488.1 mouse_genomes_project 6 142971855 142975003 + 2810454H06Rik antisense antisense MGP_C57BL6NJ_T0015721.1 MGP_C57BL6NJ_G0013766.1 mouse_genomes_project 6 41007301 41007748 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081239.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146567845 146584891 + MGP_C57BL6NJ_P0081239 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081240.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146568057 146584741 + MGP_C57BL6NJ_P0081240 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081241.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146568083 146584528 + MGP_C57BL6NJ_P0081241 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081242.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146568100 146584878 + MGP_C57BL6NJ_P0081242 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081243.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146568128 146584520 + MGP_C57BL6NJ_P0081243 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081244.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146568899 146584695 + MGP_C57BL6NJ_P0081244 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081245.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146569115 146584748 + MGP_C57BL6NJ_P0081245 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0081246.1 MGP_C57BL6NJ_G0031884.1 mouse_genomes_project 6 146570383 146579040 + MGP_C57BL6NJ_P0081246 Mgst1 protein_coding protein_coding MGP_C57BL6NJ_T0016027.1 MGP_C57BL6NJ_G0014072.1 mouse_genomes_project 6 135711647 135711761 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002277.1 MGP_C57BL6NJ_G0002167.1 mouse_genomes_project 6 130949296 130951278 - TEC TEC MGP_C57BL6NJ_T0077582.1 MGP_C57BL6NJ_G0031041.1 mouse_genomes_project 6 39261662 39658365 + MGP_C57BL6NJ_P0077582 Tmem178b protein_coding protein_coding MGP_C57BL6NJ_T0077583.1 MGP_C57BL6NJ_G0031041.1 mouse_genomes_project 6 39510039 39651727 + MGP_C57BL6NJ_P0077583 Tmem178b protein_coding protein_coding MGP_C57BL6NJ_T0077584.1 MGP_C57BL6NJ_G0031041.1 mouse_genomes_project 6 39652190 39658440 + Tmem178b protein_coding retained_intron MGP_C57BL6NJ_T0077406.1 MGP_C57BL6NJ_G0031003.1 mouse_genomes_project 6 33849834 33885598 + MGP_C57BL6NJ_P0077406 Stra8 protein_coding protein_coding MGP_C57BL6NJ_T0077407.1 MGP_C57BL6NJ_G0031003.1 mouse_genomes_project 6 33850631 33885596 + MGP_C57BL6NJ_P0077407 Stra8 protein_coding protein_coding MGP_C57BL6NJ_T0077408.1 MGP_C57BL6NJ_G0031003.1 mouse_genomes_project 6 33850675 33879417 + MGP_C57BL6NJ_P0077408 Stra8 protein_coding protein_coding MGP_C57BL6NJ_T0077409.1 MGP_C57BL6NJ_G0031003.1 mouse_genomes_project 6 33850681 33885596 + MGP_C57BL6NJ_P0077409 Stra8 protein_coding protein_coding MGP_C57BL6NJ_T0002060.1 MGP_C57BL6NJ_G0001951.1 mouse_genomes_project 6 4893821 4895693 + TEC TEC MGP_C57BL6NJ_T0077483.1 MGP_C57BL6NJ_G0031022.1 mouse_genomes_project 6 37602261 37655901 + MGP_C57BL6NJ_P0077483 Ttc26 protein_coding protein_coding MGP_C57BL6NJ_T0077484.1 MGP_C57BL6NJ_G0031022.1 mouse_genomes_project 6 37602317 37617602 + MGP_C57BL6NJ_P0077484 Ttc26 protein_coding protein_coding MGP_C57BL6NJ_T0077485.1 MGP_C57BL6NJ_G0031022.1 mouse_genomes_project 6 37602317 37655901 + MGP_C57BL6NJ_P0077485 Ttc26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077486.1 MGP_C57BL6NJ_G0031022.1 mouse_genomes_project 6 37602321 37620772 + MGP_C57BL6NJ_P0077486 Ttc26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077487.1 MGP_C57BL6NJ_G0031022.1 mouse_genomes_project 6 37613966 37617940 + Ttc26 protein_coding retained_intron MGP_C57BL6NJ_T0002219.1 MGP_C57BL6NJ_G0002110.1 mouse_genomes_project 6 95211048 95213877 - TEC TEC MGP_C57BL6NJ_T0002265.1 MGP_C57BL6NJ_G0002156.1 mouse_genomes_project 6 121973755 121977417 - TEC TEC MGP_C57BL6NJ_T0002079.1 MGP_C57BL6NJ_G0001970.1 mouse_genomes_project 6 27342437 27345681 + TEC TEC MGP_C57BL6NJ_T0077753.1 MGP_C57BL6NJ_G0031112.1 mouse_genomes_project 6 42864103 42866953 + MGP_C57BL6NJ_P0077753 Olfr47 protein_coding protein_coding MGP_C57BL6NJ_T0080977.1 MGP_C57BL6NJ_G0031802.1 mouse_genomes_project 6 137384719 137412496 - MGP_C57BL6NJ_P0080977 protein_coding protein_coding MGP_C57BL6NJ_T0101787.1 MGP_C57BL6NJ_G0039833.1 mouse_genomes_project 6 43565913 43566044 + Gm22939 snoRNA snoRNA MGP_C57BL6NJ_T0080352.1 MGP_C57BL6NJ_G0031658.1 mouse_genomes_project 6 127872710 127938553 + MGP_C57BL6NJ_P0080352 Gm7298 protein_coding protein_coding MGP_C57BL6NJ_T0002288.1 MGP_C57BL6NJ_G0002178.1 mouse_genomes_project 6 135237659 135239129 - TEC TEC MGP_C57BL6NJ_T0002150.1 MGP_C57BL6NJ_G0002041.1 mouse_genomes_project 6 75087419 75089918 - TEC TEC MGP_C57BL6NJ_T0100534.1 MGP_C57BL6NJ_G0038580.1 mouse_genomes_project 6 97938590 97938696 + Gm23035 snRNA snRNA MGP_C57BL6NJ_T0000459.1 MGP_C57BL6NJ_G0000378.1 mouse_genomes_project 6 72711265 72711565 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011894.1 MGP_C57BL6NJ_G0009979.1 mouse_genomes_project 6 16883950 16884265 + Gm22718 misc_RNA misc_RNA MGP_C57BL6NJ_T0102516.1 MGP_C57BL6NJ_G0040373.1 mouse_genomes_project 6 58512174 58512391 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0015732.1 MGP_C57BL6NJ_G0013777.1 mouse_genomes_project 6 44750409 44751112 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008738.1 MGP_C57BL6NJ_G0007070.1 mouse_genomes_project 6 33057896 33065046 + Gm13855 lincRNA lincRNA MGP_C57BL6NJ_T0002266.1 MGP_C57BL6NJ_G0002157.1 mouse_genomes_project 6 122131744 122132680 + TEC TEC MGP_C57BL6NJ_T0081031.1 MGP_C57BL6NJ_G0031836.1 mouse_genomes_project 6 140772038 140773003 + MGP_C57BL6NJ_P0081031 Tas2r129 protein_coding protein_coding MGP_C57BL6NJ_T0077993.1 MGP_C57BL6NJ_G0031166.1 mouse_genomes_project 6 50797920 50801229 - MGP_C57BL6NJ_P0077993 Cycs protein_coding protein_coding MGP_C57BL6NJ_T0002282.1 MGP_C57BL6NJ_G0002172.1 mouse_genomes_project 6 134233169 134233538 - TEC TEC MGP_C57BL6NJ_T0080018.1 MGP_C57BL6NJ_G0031600.1 mouse_genomes_project 6 121622837 121663217 - MGP_C57BL6NJ_P0080018 Plxnd1 protein_coding protein_coding MGP_C57BL6NJ_T0080019.1 MGP_C57BL6NJ_G0031600.1 mouse_genomes_project 6 121623660 121624865 - Plxnd1 protein_coding retained_intron MGP_C57BL6NJ_T0080020.1 MGP_C57BL6NJ_G0031600.1 mouse_genomes_project 6 121623826 121624391 - Plxnd1 protein_coding retained_intron MGP_C57BL6NJ_T0080021.1 MGP_C57BL6NJ_G0031600.1 mouse_genomes_project 6 121626589 121628054 - Plxnd1 protein_coding retained_intron MGP_C57BL6NJ_T0080022.1 MGP_C57BL6NJ_G0031600.1 mouse_genomes_project 6 121634989 121637453 - MGP_C57BL6NJ_P0080022 Plxnd1 protein_coding protein_coding MGP_C57BL6NJ_T0080462.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130963923 130983601 - MGP_C57BL6NJ_P0080462 Pex5 protein_coding protein_coding MGP_C57BL6NJ_T0080463.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130963924 130982967 - MGP_C57BL6NJ_P0080463 Pex5 protein_coding protein_coding MGP_C57BL6NJ_T0080464.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130963924 130983601 - MGP_C57BL6NJ_P0080464 Pex5 protein_coding protein_coding MGP_C57BL6NJ_T0080465.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130963924 130983397 - MGP_C57BL6NJ_P0080465 Pex5 protein_coding protein_coding MGP_C57BL6NJ_T0080466.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130963939 130983571 - MGP_C57BL6NJ_P0080466 Pex5 protein_coding protein_coding MGP_C57BL6NJ_T0080467.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130965018 130966722 - Pex5 protein_coding retained_intron MGP_C57BL6NJ_T0080468.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130970237 130982576 - Pex5 protein_coding processed_transcript MGP_C57BL6NJ_T0080469.1 MGP_C57BL6NJ_G0031689.1 mouse_genomes_project 6 130971420 130972475 - Pex5 protein_coding retained_intron MGP_C57BL6NJ_T0002249.1 MGP_C57BL6NJ_G0002140.1 mouse_genomes_project 6 108335518 108339110 + TEC TEC MGP_C57BL6NJ_T0005163.1 MGP_C57BL6NJ_G0004414.1 mouse_genomes_project 6 87404904 87408128 - Gm43918 antisense antisense MGP_C57BL6NJ_T0015717.1 MGP_C57BL6NJ_G0013762.1 mouse_genomes_project 6 40479181 40479369 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081367.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151434348 151553022 - MGP_C57BL6NJ_P0081367 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081368.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151434348 151552966 - MGP_C57BL6NJ_P0081368 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081369.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151434348 151553022 - MGP_C57BL6NJ_P0081369 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081370.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151435617 151552966 - MGP_C57BL6NJ_P0081370 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081371.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151440461 151553021 - MGP_C57BL6NJ_P0081371 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081372.1 MGP_C57BL6NJ_G0031912.1 mouse_genomes_project 6 151542756 151553063 - MGP_C57BL6NJ_P0081372 Abcc9 protein_coding protein_coding MGP_C57BL6NJ_T0081194.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145604434 145742557 + Ptpro protein_coding retained_intron MGP_C57BL6NJ_T0081195.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145604449 145836816 + MGP_C57BL6NJ_P0081195 Ptpro protein_coding protein_coding MGP_C57BL6NJ_T0081196.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145604580 145836816 + MGP_C57BL6NJ_P0081196 Ptpro protein_coding protein_coding MGP_C57BL6NJ_T0081197.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145783105 145836822 + MGP_C57BL6NJ_P0081197 Ptpro protein_coding protein_coding MGP_C57BL6NJ_T0081198.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145783121 145836822 + MGP_C57BL6NJ_P0081198 Ptpro protein_coding protein_coding MGP_C57BL6NJ_T0081199.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145783143 145787508 + Ptpro protein_coding retained_intron MGP_C57BL6NJ_T0081200.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145826283 145835893 + Ptpro protein_coding processed_transcript MGP_C57BL6NJ_T0081201.1 MGP_C57BL6NJ_G0031879.1 mouse_genomes_project 6 145827616 145836211 + Ptpro protein_coding processed_transcript MGP_C57BL6NJ_T0080496.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399355 131400890 + Phb2 protein_coding retained_intron MGP_C57BL6NJ_T0080497.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399355 131400088 + Phb2 protein_coding retained_intron MGP_C57BL6NJ_T0080498.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399355 131403970 + Phb2 protein_coding retained_intron MGP_C57BL6NJ_T0080499.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399355 131403970 + MGP_C57BL6NJ_P0080499 Phb2 protein_coding protein_coding MGP_C57BL6NJ_T0080500.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399510 131403653 + MGP_C57BL6NJ_P0080500 Phb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080501.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131399785 131401820 + MGP_C57BL6NJ_P0080501 Phb2 protein_coding protein_coding MGP_C57BL6NJ_T0080502.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131400141 131403660 + MGP_C57BL6NJ_P0080502 Phb2 protein_coding protein_coding MGP_C57BL6NJ_T0080503.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131402367 131403970 + Phb2 protein_coding retained_intron MGP_C57BL6NJ_T0080504.1 MGP_C57BL6NJ_G0031695.1 mouse_genomes_project 6 131402382 131403559 + Phb2 protein_coding processed_transcript MGP_C57BL6NJ_T0002171.1 MGP_C57BL6NJ_G0002062.1 mouse_genomes_project 6 83367748 83369504 + TEC TEC MGP_C57BL6NJ_T0008873.1 MGP_C57BL6NJ_G0007170.1 mouse_genomes_project 6 105699939 105759869 + Gm43950 lincRNA lincRNA MGP_C57BL6NJ_T0016068.1 MGP_C57BL6NJ_G0014113.1 mouse_genomes_project 6 140965804 140966150 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015948.1 MGP_C57BL6NJ_G0013993.1 mouse_genomes_project 6 115318334 115318878 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077631.1 MGP_C57BL6NJ_G0031057.1 mouse_genomes_project 6 40413148 40416840 - MGP_C57BL6NJ_P0077631 Gm4744 protein_coding protein_coding MGP_C57BL6NJ_T0000454.1 MGP_C57BL6NJ_G0000373.1 mouse_genomes_project 6 71991679 71992149 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011927.1 MGP_C57BL6NJ_G0010012.1 mouse_genomes_project 6 113629644 113629998 + Gm27813 misc_RNA misc_RNA MGP_C57BL6NJ_T0015652.1 MGP_C57BL6NJ_G0013697.1 mouse_genomes_project 6 10557377 10558380 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101808.1 MGP_C57BL6NJ_G0039854.1 mouse_genomes_project 6 85000685 85000803 + Gm22530 snoRNA snoRNA MGP_C57BL6NJ_T0002820.1 MGP_C57BL6NJ_G0002683.1 mouse_genomes_project 6 40594955 40595394 + MGP_C57BL6NJ_P0002820 Trbv13-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0015884.1 MGP_C57BL6NJ_G0013929.1 mouse_genomes_project 6 88583383 88583927 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080013.1 MGP_C57BL6NJ_G0031599.1 mouse_genomes_project 6 121612935 121618258 + MGP_C57BL6NJ_P0080013 H1foo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080014.1 MGP_C57BL6NJ_G0031599.1 mouse_genomes_project 6 121612935 121618263 + MGP_C57BL6NJ_P0080014 H1foo protein_coding protein_coding MGP_C57BL6NJ_T0080015.1 MGP_C57BL6NJ_G0031599.1 mouse_genomes_project 6 121612935 121618258 + MGP_C57BL6NJ_P0080015 H1foo protein_coding protein_coding MGP_C57BL6NJ_T0080016.1 MGP_C57BL6NJ_G0031599.1 mouse_genomes_project 6 121612950 121617948 + MGP_C57BL6NJ_P0080016 H1foo protein_coding protein_coding MGP_C57BL6NJ_T0080017.1 MGP_C57BL6NJ_G0031599.1 mouse_genomes_project 6 121616783 121618252 + MGP_C57BL6NJ_P0080017 H1foo protein_coding protein_coding MGP_C57BL6NJ_T0077512.1 MGP_C57BL6NJ_G0031026.1 mouse_genomes_project 6 37869909 37881449 - MGP_C57BL6NJ_P0077512 Klrg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077513.1 MGP_C57BL6NJ_G0031026.1 mouse_genomes_project 6 37870876 37881449 - MGP_C57BL6NJ_P0077513 Klrg2 protein_coding protein_coding MGP_C57BL6NJ_T0077514.1 MGP_C57BL6NJ_G0031026.1 mouse_genomes_project 6 37871477 37881458 - MGP_C57BL6NJ_P0077514 Klrg2 protein_coding protein_coding MGP_C57BL6NJ_T0008971.1 MGP_C57BL6NJ_G0007245.1 mouse_genomes_project 6 158194682 158199647 + lincRNA lincRNA MGP_C57BL6NJ_T0078931.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88749489 88874932 - MGP_C57BL6NJ_P0078931 Sfxn5 protein_coding protein_coding MGP_C57BL6NJ_T0078932.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88767335 88802919 - Sfxn5 protein_coding processed_transcript MGP_C57BL6NJ_T0078933.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88772421 88874929 - MGP_C57BL6NJ_P0078933 Sfxn5 protein_coding protein_coding MGP_C57BL6NJ_T0078934.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88806699 88874916 - Sfxn5 protein_coding retained_intron MGP_C57BL6NJ_T0078935.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88833763 88874929 - Sfxn5 protein_coding processed_transcript MGP_C57BL6NJ_T0078936.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88838910 88874932 - MGP_C57BL6NJ_P0078936 Sfxn5 protein_coding protein_coding MGP_C57BL6NJ_T0078937.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88838912 88860802 - Sfxn5 protein_coding processed_transcript MGP_C57BL6NJ_T0078938.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88859275 88874260 - MGP_C57BL6NJ_P0078938 Sfxn5 protein_coding protein_coding MGP_C57BL6NJ_T0078939.1 MGP_C57BL6NJ_G0031389.1 mouse_genomes_project 6 88870289 88874932 - Sfxn5 protein_coding retained_intron MGP_C57BL6NJ_T0005194.1 MGP_C57BL6NJ_G0004433.1 mouse_genomes_project 6 94562658 94565903 - Gm15756 antisense antisense MGP_C57BL6NJ_T0015934.1 MGP_C57BL6NJ_G0013979.1 mouse_genomes_project 6 109974103 109976002 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002272.1 MGP_C57BL6NJ_G0002162.1 mouse_genomes_project 6 123743658 123744850 - TEC TEC MGP_C57BL6NJ_T0015741.1 MGP_C57BL6NJ_G0013786.1 mouse_genomes_project 6 48440761 48441632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077722.1 MGP_C57BL6NJ_G0031095.1 mouse_genomes_project 6 42175390 42197230 - MGP_C57BL6NJ_P0077722 Tcaf2 protein_coding protein_coding MGP_C57BL6NJ_T0077723.1 MGP_C57BL6NJ_G0031095.1 mouse_genomes_project 6 42178784 42181815 - Tcaf2 protein_coding retained_intron MGP_C57BL6NJ_T0099136.1 MGP_C57BL6NJ_G0037200.1 mouse_genomes_project 6 99030196 99030339 - Gm24601 rRNA rRNA MGP_C57BL6NJ_T0077497.1 MGP_C57BL6NJ_G0031024.1 mouse_genomes_project 6 37774608 37780555 + Fmc1 protein_coding processed_transcript MGP_C57BL6NJ_T0077498.1 MGP_C57BL6NJ_G0031024.1 mouse_genomes_project 6 37775929 37780556 + MGP_C57BL6NJ_P0077498 Fmc1 protein_coding protein_coding MGP_C57BL6NJ_T0011007.1 MGP_C57BL6NJ_G0009092.1 mouse_genomes_project 6 28833017 28833087 - Mir183 miRNA miRNA MGP_C57BL6NJ_T0008702.1 MGP_C57BL6NJ_G0007045.1 mouse_genomes_project 6 17129328 17170296 - 4930524B17Rik lincRNA lincRNA MGP_C57BL6NJ_T0077286.1 MGP_C57BL6NJ_G0030983.1 mouse_genomes_project 6 29619353 29625780 - Tsga13 protein_coding processed_transcript MGP_C57BL6NJ_T0077287.1 MGP_C57BL6NJ_G0030983.1 mouse_genomes_project 6 29619353 29637828 - MGP_C57BL6NJ_P0077287 Tsga13 protein_coding protein_coding MGP_C57BL6NJ_T0077288.1 MGP_C57BL6NJ_G0030983.1 mouse_genomes_project 6 29619587 29622813 - Tsga13 protein_coding retained_intron MGP_C57BL6NJ_T0078978.1 MGP_C57BL6NJ_G0031400.1 mouse_genomes_project 6 89473087 89479067 - MGP_C57BL6NJ_P0078978 Nat8f2 protein_coding protein_coding MGP_C57BL6NJ_T0015908.1 MGP_C57BL6NJ_G0013953.1 mouse_genomes_project 6 98669467 98669686 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008964.1 MGP_C57BL6NJ_G0007239.1 mouse_genomes_project 6 156849082 156858602 - Gm15762 lincRNA lincRNA MGP_C57BL6NJ_T0008883.1 MGP_C57BL6NJ_G0007178.1 mouse_genomes_project 6 117672130 117673942 + 1700054K19Rik lincRNA lincRNA MGP_C57BL6NJ_T0078794.1 MGP_C57BL6NJ_G0031366.1 mouse_genomes_project 6 86524963 86618750 + MGP_C57BL6NJ_P0078794 Slc4a5 protein_coding protein_coding MGP_C57BL6NJ_T0078795.1 MGP_C57BL6NJ_G0031366.1 mouse_genomes_project 6 86537734 86566624 + Slc4a5 protein_coding processed_transcript MGP_C57BL6NJ_T0078796.1 MGP_C57BL6NJ_G0031366.1 mouse_genomes_project 6 86537954 86619937 + MGP_C57BL6NJ_P0078796 Slc4a5 protein_coding protein_coding MGP_C57BL6NJ_T0078797.1 MGP_C57BL6NJ_G0031366.1 mouse_genomes_project 6 86586770 86601176 + Slc4a5 protein_coding processed_transcript MGP_C57BL6NJ_T0078798.1 MGP_C57BL6NJ_G0031366.1 mouse_genomes_project 6 86600359 86611737 + Slc4a5 protein_coding processed_transcript MGP_C57BL6NJ_T0078449.1 MGP_C57BL6NJ_G0031298.1 mouse_genomes_project 6 73873057 73890829 + MGP_C57BL6NJ_P0078449 Rnf103 protein_coding protein_coding MGP_C57BL6NJ_T0078450.1 MGP_C57BL6NJ_G0031298.1 mouse_genomes_project 6 73873073 73890829 + MGP_C57BL6NJ_P0078450 Rnf103 protein_coding protein_coding MGP_C57BL6NJ_T0078451.1 MGP_C57BL6NJ_G0031298.1 mouse_genomes_project 6 73873166 73890711 + MGP_C57BL6NJ_P0078451 Rnf103 protein_coding protein_coding MGP_C57BL6NJ_T0078452.1 MGP_C57BL6NJ_G0031298.1 mouse_genomes_project 6 73883049 73886302 + Rnf103 protein_coding retained_intron MGP_C57BL6NJ_T0005076.1 MGP_C57BL6NJ_G0004352.1 mouse_genomes_project 6 19907048 19908114 + Gm42582 antisense antisense MGP_C57BL6NJ_T0081272.1 MGP_C57BL6NJ_G0031890.1 mouse_genomes_project 6 148599069 148651191 - MGP_C57BL6NJ_P0081272 Plcz1 protein_coding protein_coding MGP_C57BL6NJ_T0081273.1 MGP_C57BL6NJ_G0031890.1 mouse_genomes_project 6 148599118 148651165 - MGP_C57BL6NJ_P0081273 Plcz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081274.1 MGP_C57BL6NJ_G0031890.1 mouse_genomes_project 6 148599120 148651146 - MGP_C57BL6NJ_P0081274 Plcz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081275.1 MGP_C57BL6NJ_G0031890.1 mouse_genomes_project 6 148630101 148651146 - MGP_C57BL6NJ_P0081275 Plcz1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011897.1 MGP_C57BL6NJ_G0009982.1 mouse_genomes_project 6 29461021 29461251 + Gm27522 misc_RNA misc_RNA MGP_C57BL6NJ_T0078650.1 MGP_C57BL6NJ_G0031336.1 mouse_genomes_project 6 81359059 81365016 + MGP_C57BL6NJ_P0078650 Reg1 protein_coding protein_coding MGP_C57BL6NJ_T0078651.1 MGP_C57BL6NJ_G0031336.1 mouse_genomes_project 6 81359119 81365016 + MGP_C57BL6NJ_P0078651 Reg1 protein_coding protein_coding MGP_C57BL6NJ_T0078652.1 MGP_C57BL6NJ_G0031336.1 mouse_genomes_project 6 81362331 81365015 + MGP_C57BL6NJ_P0078652 Reg1 protein_coding protein_coding MGP_C57BL6NJ_T0015794.1 MGP_C57BL6NJ_G0013839.1 mouse_genomes_project 6 66274579 66275249 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002089.1 MGP_C57BL6NJ_G0001980.1 mouse_genomes_project 6 33786954 33788187 + TEC TEC MGP_C57BL6NJ_T0016024.1 MGP_C57BL6NJ_G0014069.1 mouse_genomes_project 6 135344485 135344956 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005208.1 MGP_C57BL6NJ_G0004442.1 mouse_genomes_project 6 105878881 105891827 + Gm26911 antisense antisense MGP_C57BL6NJ_T0005209.1 MGP_C57BL6NJ_G0004442.1 mouse_genomes_project 6 105878898 105901699 + Gm26911 antisense antisense MGP_C57BL6NJ_T0005210.1 MGP_C57BL6NJ_G0004442.1 mouse_genomes_project 6 105878970 105890443 + Gm26911 antisense antisense MGP_C57BL6NJ_T0011911.1 MGP_C57BL6NJ_G0009996.1 mouse_genomes_project 6 52625798 52626002 + Gm27454 misc_RNA misc_RNA MGP_C57BL6NJ_T0015875.1 MGP_C57BL6NJ_G0013920.1 mouse_genomes_project 6 86225959 86226317 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077740.1 MGP_C57BL6NJ_G0031102.1 mouse_genomes_project 6 42443560 42444493 + MGP_C57BL6NJ_P0077740 Olfr448 protein_coding protein_coding MGP_C57BL6NJ_T0015987.1 MGP_C57BL6NJ_G0014032.1 mouse_genomes_project 6 127700997 127701385 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002102.1 MGP_C57BL6NJ_G0001993.1 mouse_genomes_project 6 45008533 45012214 + TEC TEC MGP_C57BL6NJ_T0077052.1 MGP_C57BL6NJ_G0030946.1 mouse_genomes_project 6 26952253 26963253 + MGP_C57BL6NJ_P0077052 Fscn3 protein_coding protein_coding MGP_C57BL6NJ_T0077053.1 MGP_C57BL6NJ_G0030946.1 mouse_genomes_project 6 26958861 26960459 + Fscn3 protein_coding processed_transcript MGP_C57BL6NJ_T0002076.1 MGP_C57BL6NJ_G0001967.1 mouse_genomes_project 6 26745787 26749712 - TEC TEC MGP_C57BL6NJ_T0000023.1 MGP_C57BL6NJ_G0000015.1 mouse_genomes_project 6 73027105 73027637 + MGP_C57BL6NJ_P0000023 Igkc IG_C_gene IG_C_gene MGP_C57BL6NJ_T0015805.1 MGP_C57BL6NJ_G0013850.1 mouse_genomes_project 6 66856112 66857715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000412.1 MGP_C57BL6NJ_G0000331.1 mouse_genomes_project 6 70200118 70200587 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0016047.1 MGP_C57BL6NJ_G0014092.1 mouse_genomes_project 6 138615002 138615228 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005131.1 MGP_C57BL6NJ_G0004395.1 mouse_genomes_project 6 64594603 64599641 - Gm44071 antisense antisense MGP_C57BL6NJ_T0008909.1 MGP_C57BL6NJ_G0007202.1 mouse_genomes_project 6 133149560 133153382 + Gm29009 lincRNA lincRNA MGP_C57BL6NJ_T0015724.1 MGP_C57BL6NJ_G0013769.1 mouse_genomes_project 6 42276716 42277148 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077671.1 MGP_C57BL6NJ_G0031080.1 mouse_genomes_project 6 41773994 41778501 + MGP_C57BL6NJ_P0077671 Gstk1 protein_coding protein_coding MGP_C57BL6NJ_T0077672.1 MGP_C57BL6NJ_G0031080.1 mouse_genomes_project 6 41774038 41778501 + MGP_C57BL6NJ_P0077672 Gstk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077673.1 MGP_C57BL6NJ_G0031080.1 mouse_genomes_project 6 41774048 41778507 + Gstk1 protein_coding retained_intron MGP_C57BL6NJ_T0077674.1 MGP_C57BL6NJ_G0031080.1 mouse_genomes_project 6 41774082 41778379 + Gstk1 protein_coding processed_transcript MGP_C57BL6NJ_T0002702.1 MGP_C57BL6NJ_G0002582.1 mouse_genomes_project 6 41055708 41055756 + MGP_C57BL6NJ_P0002702 Trbj1-2 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0103301.1 MGP_C57BL6NJ_G0041094.1 mouse_genomes_project 6 140549376 140549743 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079063.1 MGP_C57BL6NJ_G0031412.1 mouse_genomes_project 6 90093159 90112787 + MGP_C57BL6NJ_P0079063 Gm44790 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005265.1 MGP_C57BL6NJ_G0004487.1 mouse_genomes_project 6 142815693 142816695 + Gm44025 antisense antisense MGP_C57BL6NJ_T0081139.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144813776 144917932 + MGP_C57BL6NJ_P0081139 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081140.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144813780 144867208 + MGP_C57BL6NJ_P0081140 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081141.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144813815 144881562 + MGP_C57BL6NJ_P0081141 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081142.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144813820 144819369 + Atf7ip protein_coding retained_intron MGP_C57BL6NJ_T0081143.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144827896 144889555 + MGP_C57BL6NJ_P0081143 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081144.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144846502 144857035 + MGP_C57BL6NJ_P0081144 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081145.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144849281 144857218 + MGP_C57BL6NJ_P0081145 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081146.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144849299 144850468 + Atf7ip protein_coding retained_intron MGP_C57BL6NJ_T0081147.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144857967 144870224 + MGP_C57BL6NJ_P0081147 Atf7ip protein_coding protein_coding MGP_C57BL6NJ_T0081148.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144876676 144881509 + Atf7ip protein_coding retained_intron MGP_C57BL6NJ_T0081149.1 MGP_C57BL6NJ_G0031865.1 mouse_genomes_project 6 144897527 144915389 + Atf7ip protein_coding retained_intron MGP_C57BL6NJ_T0078733.1 MGP_C57BL6NJ_G0031353.1 mouse_genomes_project 6 86351364 86353266 - MGP_C57BL6NJ_P0078733 Tlx2 protein_coding protein_coding MGP_C57BL6NJ_T0078734.1 MGP_C57BL6NJ_G0031353.1 mouse_genomes_project 6 86351631 86353334 - MGP_C57BL6NJ_P0078734 Tlx2 protein_coding protein_coding MGP_C57BL6NJ_T0081073.1 MGP_C57BL6NJ_G0031850.1 mouse_genomes_project 6 142901633 142931268 + MGP_C57BL6NJ_P0081073 Crebl2 protein_coding protein_coding MGP_C57BL6NJ_T0081074.1 MGP_C57BL6NJ_G0031850.1 mouse_genomes_project 6 142901707 142922108 + Crebl2 protein_coding retained_intron MGP_C57BL6NJ_T0081075.1 MGP_C57BL6NJ_G0031850.1 mouse_genomes_project 6 142901734 142928501 + MGP_C57BL6NJ_P0081075 Crebl2 protein_coding protein_coding MGP_C57BL6NJ_T0081076.1 MGP_C57BL6NJ_G0031850.1 mouse_genomes_project 6 142923671 142927091 + Crebl2 protein_coding retained_intron MGP_C57BL6NJ_T0002829.1 MGP_C57BL6NJ_G0002691.1 mouse_genomes_project 6 40674819 40675273 + MGP_C57BL6NJ_P0002829 Trbv23 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002830.1 MGP_C57BL6NJ_G0002691.1 mouse_genomes_project 6 40674819 40675273 + MGP_C57BL6NJ_P0002830 Trbv23 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0080570.1 MGP_C57BL6NJ_G0031706.1 mouse_genomes_project 6 131524597 131530632 - MGP_C57BL6NJ_P0080570 Gnb3 protein_coding protein_coding MGP_C57BL6NJ_T0080571.1 MGP_C57BL6NJ_G0031706.1 mouse_genomes_project 6 131524604 131530314 - Gnb3 protein_coding retained_intron MGP_C57BL6NJ_T0080572.1 MGP_C57BL6NJ_G0031706.1 mouse_genomes_project 6 131525036 131526654 - Gnb3 protein_coding processed_transcript MGP_C57BL6NJ_T0080573.1 MGP_C57BL6NJ_G0031706.1 mouse_genomes_project 6 131529455 131530440 - Gnb3 protein_coding retained_intron MGP_C57BL6NJ_T0002162.1 MGP_C57BL6NJ_G0002053.1 mouse_genomes_project 6 80347368 80350481 - TEC TEC MGP_C57BL6NJ_T0011071.1 MGP_C57BL6NJ_G0009156.1 mouse_genomes_project 6 141067356 141067466 + Gm23403 miRNA miRNA MGP_C57BL6NJ_T0015683.1 MGP_C57BL6NJ_G0013728.1 mouse_genomes_project 6 21325632 21326292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005219.1 MGP_C57BL6NJ_G0004448.1 mouse_genomes_project 6 118559793 118569586 - antisense antisense MGP_C57BL6NJ_T0005220.1 MGP_C57BL6NJ_G0004448.1 mouse_genomes_project 6 118560024 118569572 - antisense antisense MGP_C57BL6NJ_T0005221.1 MGP_C57BL6NJ_G0004448.1 mouse_genomes_project 6 118562763 118569605 - antisense antisense MGP_C57BL6NJ_T0005222.1 MGP_C57BL6NJ_G0004448.1 mouse_genomes_project 6 118563139 118569728 - antisense antisense MGP_C57BL6NJ_T0015865.1 MGP_C57BL6NJ_G0013910.1 mouse_genomes_project 6 80990357 80991377 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002833.1 MGP_C57BL6NJ_G0002693.1 mouse_genomes_project 6 40725524 40726012 + MGP_C57BL6NJ_P0002833 Trbv29 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0078490.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74291850 74294480 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078491.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74291852 74320626 - MGP_C57BL6NJ_P0078491 Ptcd3 protein_coding protein_coding MGP_C57BL6NJ_T0078492.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74291853 74320626 - MGP_C57BL6NJ_P0078492 Ptcd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078493.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74291855 74301555 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078494.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74293037 74320616 - MGP_C57BL6NJ_P0078494 Ptcd3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078495.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74296989 74301480 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078496.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74299138 74320620 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078497.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74300492 74309028 - MGP_C57BL6NJ_P0078497 Ptcd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078498.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74304853 74307010 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078499.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74307168 74310312 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0078500.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74310268 74320594 - MGP_C57BL6NJ_P0078500 Ptcd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078501.1 MGP_C57BL6NJ_G0031304.1 mouse_genomes_project 6 74314562 74315347 - Ptcd3 protein_coding retained_intron MGP_C57BL6NJ_T0002246.1 MGP_C57BL6NJ_G0002137.1 mouse_genomes_project 6 106040812 106041698 - TEC TEC MGP_C57BL6NJ_T0081335.1 MGP_C57BL6NJ_G0031904.1 mouse_genomes_project 6 151124566 151130105 + MGP_C57BL6NJ_P0081335 Iapp protein_coding protein_coding MGP_C57BL6NJ_T0081336.1 MGP_C57BL6NJ_G0031904.1 mouse_genomes_project 6 151124590 151125210 + Iapp protein_coding processed_transcript MGP_C57BL6NJ_T0002152.1 MGP_C57BL6NJ_G0002043.1 mouse_genomes_project 6 75127494 75128726 - TEC TEC MGP_C57BL6NJ_T0081611.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158194024 158336865 - MGP_C57BL6NJ_P0081611 Dennd5b protein_coding protein_coding MGP_C57BL6NJ_T0081612.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158236084 158239423 - Dennd5b protein_coding retained_intron MGP_C57BL6NJ_T0081613.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158236222 158336723 - Dennd5b protein_coding retained_intron MGP_C57BL6NJ_T0081614.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158269657 158274409 - Dennd5b protein_coding retained_intron MGP_C57BL6NJ_T0081615.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158303752 158316393 - MGP_C57BL6NJ_P0081615 Dennd5b protein_coding protein_coding MGP_C57BL6NJ_T0081616.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158303775 158336769 - MGP_C57BL6NJ_P0081616 Dennd5b protein_coding protein_coding MGP_C57BL6NJ_T0081617.1 MGP_C57BL6NJ_G0031951.1 mouse_genomes_project 6 158317482 158320461 - Dennd5b protein_coding retained_intron MGP_C57BL6NJ_T0000278.1 MGP_C57BL6NJ_G0000207.1 mouse_genomes_project 6 72301690 72496156 - MGP_C57BL6NJ_P0000278 Igkv8-27 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000279.1 MGP_C57BL6NJ_G0000207.1 mouse_genomes_project 6 72301690 72301990 - MGP_C57BL6NJ_P0000279 Igkv8-27 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077640.1 MGP_C57BL6NJ_G0031066.1 mouse_genomes_project 6 41037989 41041282 + MGP_C57BL6NJ_P0077640 Prss2 protein_coding protein_coding MGP_C57BL6NJ_T0080734.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132469002 132754214 + Ano2 protein_coding retained_intron MGP_C57BL6NJ_T0080735.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132469002 132839020 + MGP_C57BL6NJ_P0080735 Ano2 protein_coding protein_coding MGP_C57BL6NJ_T0080736.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132469306 132838408 + MGP_C57BL6NJ_P0080736 Ano2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080737.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132488943 132839020 + MGP_C57BL6NJ_P0080737 Ano2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080738.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132489793 132572218 + Ano2 protein_coding processed_transcript MGP_C57BL6NJ_T0080739.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132599872 132696015 + Ano2 protein_coding processed_transcript MGP_C57BL6NJ_T0080740.1 MGP_C57BL6NJ_G0031735.1 mouse_genomes_project 6 132599873 132839018 + MGP_C57BL6NJ_P0080740 Ano2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0008898.1 MGP_C57BL6NJ_G0007191.1 mouse_genomes_project 6 124097277 124099035 - 1700069P05Rik lincRNA lincRNA MGP_C57BL6NJ_T0081517.1 MGP_C57BL6NJ_G0031934.1 mouse_genomes_project 6 155802780 155859338 + MGP_C57BL6NJ_P0081517 Stk38l protein_coding protein_coding MGP_C57BL6NJ_T0081518.1 MGP_C57BL6NJ_G0031934.1 mouse_genomes_project 6 155802821 155857082 + MGP_C57BL6NJ_P0081518 Stk38l protein_coding protein_coding MGP_C57BL6NJ_T0081519.1 MGP_C57BL6NJ_G0031934.1 mouse_genomes_project 6 155803097 155837701 + MGP_C57BL6NJ_P0081519 Stk38l protein_coding protein_coding MGP_C57BL6NJ_T0081520.1 MGP_C57BL6NJ_G0031934.1 mouse_genomes_project 6 155836680 155855659 + MGP_C57BL6NJ_P0081520 Stk38l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000249.1 MGP_C57BL6NJ_G0000186.1 mouse_genomes_project 6 71533089 71533658 - MGP_C57BL6NJ_P0000249 Igkv4-51 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0078158.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55702463 55746946 - MGP_C57BL6NJ_P0078158 Crhr2 protein_coding protein_coding MGP_C57BL6NJ_T0078159.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55703600 55730400 - MGP_C57BL6NJ_P0078159 Crhr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078160.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55703627 55730328 - MGP_C57BL6NJ_P0078160 Crhr2 protein_coding protein_coding MGP_C57BL6NJ_T0078161.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55703692 55730186 - MGP_C57BL6NJ_P0078161 Crhr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078162.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55704440 55746773 - MGP_C57BL6NJ_P0078162 Crhr2 protein_coding protein_coding MGP_C57BL6NJ_T0078163.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55705378 55712988 - Crhr2 protein_coding retained_intron MGP_C57BL6NJ_T0078164.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55711041 55746948 - Crhr2 protein_coding retained_intron MGP_C57BL6NJ_T0078165.1 MGP_C57BL6NJ_G0031205.1 mouse_genomes_project 6 55717157 55730186 - Crhr2 protein_coding retained_intron MGP_C57BL6NJ_T0000396.1 MGP_C57BL6NJ_G0000315.1 mouse_genomes_project 6 69341502 69341957 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0077864.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662332 48667513 + MGP_C57BL6NJ_P0077864 Repin1 protein_coding protein_coding MGP_C57BL6NJ_T0077865.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662332 48667513 + MGP_C57BL6NJ_P0077865 Repin1 protein_coding protein_coding MGP_C57BL6NJ_T0077866.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662332 48665820 + MGP_C57BL6NJ_P0077866 Repin1 protein_coding protein_coding MGP_C57BL6NJ_T0077867.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662340 48667514 + MGP_C57BL6NJ_P0077867 Repin1 protein_coding protein_coding MGP_C57BL6NJ_T0077868.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662349 48667513 + MGP_C57BL6NJ_P0077868 Repin1 protein_coding protein_coding MGP_C57BL6NJ_T0077869.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662389 48663783 + Repin1 protein_coding retained_intron MGP_C57BL6NJ_T0077872.1 MGP_C57BL6NJ_G0031136.1 mouse_genomes_project 6 48662768 48665056 + Repin1 protein_coding retained_intron MGP_C57BL6NJ_T0015849.1 MGP_C57BL6NJ_G0013894.1 mouse_genomes_project 6 74073100 74073684 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077819.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 47998768 48024525 - MGP_C57BL6NJ_P0077819 Zfp746 protein_coding protein_coding MGP_C57BL6NJ_T0077820.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 47998768 48024525 - MGP_C57BL6NJ_P0077820 Zfp746 protein_coding protein_coding MGP_C57BL6NJ_T0077821.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 48001124 48003734 - MGP_C57BL6NJ_P0077821 Zfp746 protein_coding protein_coding MGP_C57BL6NJ_T0077822.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 48002584 48020210 - Zfp746 protein_coding retained_intron MGP_C57BL6NJ_T0077823.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 48019553 48023142 - Zfp746 protein_coding retained_intron MGP_C57BL6NJ_T0077824.1 MGP_C57BL6NJ_G0031127.1 mouse_genomes_project 6 48023167 48024478 - Zfp746 protein_coding retained_intron MGP_C57BL6NJ_T0079334.1 MGP_C57BL6NJ_G0031473.1 mouse_genomes_project 6 94259584 94273655 - MGP_C57BL6NJ_P0079334 Chst13 protein_coding protein_coding MGP_C57BL6NJ_T0081033.1 MGP_C57BL6NJ_G0031838.1 mouse_genomes_project 6 140819258 140820209 - MGP_C57BL6NJ_P0081033 Tas2r109 protein_coding protein_coding MGP_C57BL6NJ_T0079607.1 MGP_C57BL6NJ_G0031527.1 mouse_genomes_project 6 105483772 105527994 + MGP_C57BL6NJ_P0079607 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079608.1 MGP_C57BL6NJ_G0031527.1 mouse_genomes_project 6 105506062 105520632 + protein_coding retained_intron MGP_C57BL6NJ_T0079609.1 MGP_C57BL6NJ_G0031527.1 mouse_genomes_project 6 105506113 105520721 + MGP_C57BL6NJ_P0079609 protein_coding protein_coding MGP_C57BL6NJ_T0079610.1 MGP_C57BL6NJ_G0031527.1 mouse_genomes_project 6 105520770 105521368 + protein_coding retained_intron MGP_C57BL6NJ_T0008849.1 MGP_C57BL6NJ_G0007152.1 mouse_genomes_project 6 93043804 93101368 - lincRNA lincRNA MGP_C57BL6NJ_T0015863.1 MGP_C57BL6NJ_G0013908.1 mouse_genomes_project 6 78872242 78873515 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002238.1 MGP_C57BL6NJ_G0002129.1 mouse_genomes_project 6 104843699 104845667 - TEC TEC MGP_C57BL6NJ_T0077555.1 MGP_C57BL6NJ_G0031035.1 mouse_genomes_project 6 38788041 38897256 - MGP_C57BL6NJ_P0077555 Dennd2a protein_coding protein_coding MGP_C57BL6NJ_T0077556.1 MGP_C57BL6NJ_G0031035.1 mouse_genomes_project 6 38788916 38815626 - Dennd2a protein_coding retained_intron MGP_C57BL6NJ_T0077557.1 MGP_C57BL6NJ_G0031035.1 mouse_genomes_project 6 38795470 38797591 - Dennd2a protein_coding retained_intron MGP_C57BL6NJ_T0077558.1 MGP_C57BL6NJ_G0031035.1 mouse_genomes_project 6 38811038 38812916 - Dennd2a protein_coding retained_intron MGP_C57BL6NJ_T0077559.1 MGP_C57BL6NJ_G0031035.1 mouse_genomes_project 6 38823431 38897256 - MGP_C57BL6NJ_P0077559 Dennd2a protein_coding protein_coding MGP_C57BL6NJ_T0008966.1 MGP_C57BL6NJ_G0007241.1 mouse_genomes_project 6 157774586 157782108 - Gm6313 lincRNA lincRNA MGP_C57BL6NJ_T0008967.1 MGP_C57BL6NJ_G0007241.1 mouse_genomes_project 6 157774586 157777534 - Gm6313 lincRNA lincRNA MGP_C57BL6NJ_T0081506.1 MGP_C57BL6NJ_G0031932.1 mouse_genomes_project 6 155678146 155712629 - MGP_C57BL6NJ_P0081506 Tm7sf3 protein_coding protein_coding MGP_C57BL6NJ_T0081507.1 MGP_C57BL6NJ_G0031932.1 mouse_genomes_project 6 155686896 155712530 - MGP_C57BL6NJ_P0081507 Tm7sf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081508.1 MGP_C57BL6NJ_G0031932.1 mouse_genomes_project 6 155695951 155720914 - Tm7sf3 protein_coding processed_transcript MGP_C57BL6NJ_T0081509.1 MGP_C57BL6NJ_G0031932.1 mouse_genomes_project 6 155697956 155720924 - Tm7sf3 protein_coding processed_transcript MGP_C57BL6NJ_T0000058.1 MGP_C57BL6NJ_G0000047.1 mouse_genomes_project 6 73024556 73024598 + Igkj5 IG_J_gene processed_transcript MGP_C57BL6NJ_T0000059.1 MGP_C57BL6NJ_G0000047.1 mouse_genomes_project 6 73024556 73024594 + MGP_C57BL6NJ_P0000059 Igkj5 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0015909.1 MGP_C57BL6NJ_G0013954.1 mouse_genomes_project 6 99024277 99025267 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008681.1 MGP_C57BL6NJ_G0007031.1 mouse_genomes_project 6 3597992 3680472 - Gm20618 lincRNA lincRNA MGP_C57BL6NJ_T0008682.1 MGP_C57BL6NJ_G0007031.1 mouse_genomes_project 6 3631600 3695385 - Gm20618 lincRNA lincRNA MGP_C57BL6NJ_T0002313.1 MGP_C57BL6NJ_G0002203.1 mouse_genomes_project 6 149293396 149295668 - TEC TEC MGP_C57BL6NJ_T0016011.1 MGP_C57BL6NJ_G0014056.1 mouse_genomes_project 6 133874559 133874837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077909.1 MGP_C57BL6NJ_G0031148.1 mouse_genomes_project 6 48849064 48855493 - MGP_C57BL6NJ_P0077909 Gimap3 protein_coding protein_coding MGP_C57BL6NJ_T0077910.1 MGP_C57BL6NJ_G0031148.1 mouse_genomes_project 6 48849066 48851559 - MGP_C57BL6NJ_P0077910 Gimap3 protein_coding protein_coding MGP_C57BL6NJ_T0002308.1 MGP_C57BL6NJ_G0002198.1 mouse_genomes_project 6 147093655 147094155 + TEC TEC MGP_C57BL6NJ_T0077613.1 MGP_C57BL6NJ_G0031050.1 mouse_genomes_project 6 39999144 40000205 + MGP_C57BL6NJ_P0077613 Olfr460 protein_coding protein_coding MGP_C57BL6NJ_T0015832.1 MGP_C57BL6NJ_G0013877.1 mouse_genomes_project 6 69407692 69407863 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016059.1 MGP_C57BL6NJ_G0014104.1 mouse_genomes_project 6 140092973 140093448 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081136.1 MGP_C57BL6NJ_G0031864.1 mouse_genomes_project 6 144662103 144678336 - MGP_C57BL6NJ_P0081136 E330021D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0081137.1 MGP_C57BL6NJ_G0031864.1 mouse_genomes_project 6 144662501 144663617 - MGP_C57BL6NJ_P0081137 E330021D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0081138.1 MGP_C57BL6NJ_G0031864.1 mouse_genomes_project 6 144663281 144678331 - MGP_C57BL6NJ_P0081138 E330021D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0015730.1 MGP_C57BL6NJ_G0013775.1 mouse_genomes_project 6 44435296 44435441 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002165.1 MGP_C57BL6NJ_G0002056.1 mouse_genomes_project 6 80585546 80588341 - TEC TEC MGP_C57BL6NJ_T0081108.1 MGP_C57BL6NJ_G0031857.1 mouse_genomes_project 6 143261890 143299932 - MGP_C57BL6NJ_P0081108 Hebp1 protein_coding protein_coding MGP_C57BL6NJ_T0081109.1 MGP_C57BL6NJ_G0031857.1 mouse_genomes_project 6 143278319 143299909 - Hebp1 protein_coding processed_transcript MGP_C57BL6NJ_T0081110.1 MGP_C57BL6NJ_G0031857.1 mouse_genomes_project 6 143280724 143333185 - Hebp1 protein_coding processed_transcript MGP_C57BL6NJ_T0081111.1 MGP_C57BL6NJ_G0031857.1 mouse_genomes_project 6 143297262 143299852 - Hebp1 protein_coding retained_intron MGP_C57BL6NJ_T0002210.1 MGP_C57BL6NJ_G0002101.1 mouse_genomes_project 6 92568607 92571496 + TEC TEC MGP_C57BL6NJ_T0016000.1 MGP_C57BL6NJ_G0014045.1 mouse_genomes_project 6 130398880 130399727 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015915.1 MGP_C57BL6NJ_G0013960.1 mouse_genomes_project 6 101812009 101813746 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015958.1 MGP_C57BL6NJ_G0014003.1 mouse_genomes_project 6 119093733 119093958 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015691.1 MGP_C57BL6NJ_G0013736.1 mouse_genomes_project 6 24296096 24296431 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002261.1 MGP_C57BL6NJ_G0002152.1 mouse_genomes_project 6 119231062 119231600 + TEC TEC MGP_C57BL6NJ_T0008818.1 MGP_C57BL6NJ_G0007130.1 mouse_genomes_project 6 82690559 82722485 + Gm44271 lincRNA lincRNA MGP_C57BL6NJ_T0101804.1 MGP_C57BL6NJ_G0039850.1 mouse_genomes_project 6 73174027 73174163 + Gm23346 snoRNA snoRNA MGP_C57BL6NJ_T0015739.1 MGP_C57BL6NJ_G0013784.1 mouse_genomes_project 6 47772105 47772501 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011921.1 MGP_C57BL6NJ_G0010006.1 mouse_genomes_project 6 87074620 87075086 + Gm27631 misc_RNA misc_RNA MGP_C57BL6NJ_T0081627.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158399652 158432722 - MGP_C57BL6NJ_P0081627 Amn1 protein_coding protein_coding MGP_C57BL6NJ_T0081628.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158399772 158417380 - Amn1 protein_coding retained_intron MGP_C57BL6NJ_T0081629.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158400082 158432674 - Amn1 protein_coding processed_transcript MGP_C57BL6NJ_T0081630.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158400083 158432695 - MGP_C57BL6NJ_P0081630 Amn1 protein_coding protein_coding MGP_C57BL6NJ_T0081631.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158400088 158427502 - Amn1 protein_coding processed_transcript MGP_C57BL6NJ_T0081632.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158400104 158427499 - MGP_C57BL6NJ_P0081632 Amn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081633.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158411148 158432691 - Amn1 protein_coding processed_transcript MGP_C57BL6NJ_T0081634.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158413304 158432680 - Amn1 protein_coding retained_intron MGP_C57BL6NJ_T0081635.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158413470 158432705 - Amn1 protein_coding processed_transcript MGP_C57BL6NJ_T0081636.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158414882 158432697 - MGP_C57BL6NJ_P0081636 Amn1 protein_coding protein_coding MGP_C57BL6NJ_T0081637.1 MGP_C57BL6NJ_G0031953.1 mouse_genomes_project 6 158416870 158432712 - Amn1 protein_coding retained_intron MGP_C57BL6NJ_T0011062.1 MGP_C57BL6NJ_G0009147.1 mouse_genomes_project 6 131404933 131405005 - Mir141 miRNA miRNA MGP_C57BL6NJ_T0015795.1 MGP_C57BL6NJ_G0013840.1 mouse_genomes_project 6 66381628 66382517 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016105.1 MGP_C57BL6NJ_G0014150.1 mouse_genomes_project 6 158605863 158607325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002882.1 MGP_C57BL6NJ_G0002736.1 mouse_genomes_project 6 40680635 40680908 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0005289.1 MGP_C57BL6NJ_G0004508.1 mouse_genomes_project 6 155040184 155046222 - Sspnos antisense antisense MGP_C57BL6NJ_T0015659.1 MGP_C57BL6NJ_G0013704.1 mouse_genomes_project 6 13874208 13874820 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008902.1 MGP_C57BL6NJ_G0007195.1 mouse_genomes_project 6 126610786 126620735 + 1700072O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0080804.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134948571 135026233 - MGP_C57BL6NJ_P0080804 Tspan9 protein_coding protein_coding MGP_C57BL6NJ_T0080805.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134952429 134953990 - Tspan9 protein_coding retained_intron MGP_C57BL6NJ_T0080806.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134952934 135026737 - MGP_C57BL6NJ_P0080806 Tspan9 protein_coding protein_coding MGP_C57BL6NJ_T0080807.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134953603 135143215 - MGP_C57BL6NJ_P0080807 Tspan9 protein_coding protein_coding MGP_C57BL6NJ_T0080808.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134953609 135137573 - MGP_C57BL6NJ_P0080808 Tspan9 protein_coding protein_coding MGP_C57BL6NJ_T0080809.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 134954338 135121152 - MGP_C57BL6NJ_P0080809 Tspan9 protein_coding protein_coding MGP_C57BL6NJ_T0080810.1 MGP_C57BL6NJ_G0031753.1 mouse_genomes_project 6 135076452 135143249 - Tspan9 protein_coding processed_transcript MGP_C57BL6NJ_T0000260.1 MGP_C57BL6NJ_G0000195.1 mouse_genomes_project 6 71925438 71926027 - MGP_C57BL6NJ_P0000260 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0103296.1 MGP_C57BL6NJ_G0041089.1 mouse_genomes_project 6 138295444 138416368 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0015841.1 MGP_C57BL6NJ_G0013886.1 mouse_genomes_project 6 70663400 70663881 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011917.1 MGP_C57BL6NJ_G0010002.1 mouse_genomes_project 6 58383631 58383948 + Gm27896 misc_RNA misc_RNA MGP_C57BL6NJ_T0103283.1 MGP_C57BL6NJ_G0041077.1 mouse_genomes_project 6 130631884 130632788 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099505.1 MGP_C57BL6NJ_G0037558.1 mouse_genomes_project 6 136584408 136585002 + Gm43914 sense_intronic sense_intronic MGP_C57BL6NJ_T0080755.1 MGP_C57BL6NJ_G0031741.1 mouse_genomes_project 6 133729344 133750468 + MGP_C57BL6NJ_P0080755 Akap3 protein_coding protein_coding MGP_C57BL6NJ_T0080756.1 MGP_C57BL6NJ_G0031741.1 mouse_genomes_project 6 133729390 133750465 + MGP_C57BL6NJ_P0080756 Akap3 protein_coding protein_coding MGP_C57BL6NJ_T0080757.1 MGP_C57BL6NJ_G0031741.1 mouse_genomes_project 6 133729406 133750468 + MGP_C57BL6NJ_P0080757 Akap3 protein_coding protein_coding MGP_C57BL6NJ_T0078242.1 MGP_C57BL6NJ_G0031238.1 mouse_genomes_project 6 58321874 58350937 - MGP_C57BL6NJ_P0078242 Ppm1k protein_coding protein_coding MGP_C57BL6NJ_T0078243.1 MGP_C57BL6NJ_G0031238.1 mouse_genomes_project 6 58328916 58330927 - MGP_C57BL6NJ_P0078243 Ppm1k protein_coding protein_coding MGP_C57BL6NJ_T0078244.1 MGP_C57BL6NJ_G0031238.1 mouse_genomes_project 6 58349945 58350979 - Ppm1k protein_coding processed_transcript MGP_C57BL6NJ_T0005134.1 MGP_C57BL6NJ_G0004398.1 mouse_genomes_project 6 68766558 68835199 - antisense antisense MGP_C57BL6NJ_T0002072.1 MGP_C57BL6NJ_G0001963.1 mouse_genomes_project 6 21444591 21446809 + TEC TEC MGP_C57BL6NJ_T0078201.1 MGP_C57BL6NJ_G0031215.1 mouse_genomes_project 6 57426721 57430177 - MGP_C57BL6NJ_P0078201 Lsm5 protein_coding protein_coding MGP_C57BL6NJ_T0077650.1 MGP_C57BL6NJ_G0031070.1 mouse_genomes_project 6 41222523 41223810 + MGP_C57BL6NJ_P0077650 1700034O15Rik protein_coding protein_coding MGP_C57BL6NJ_T0008691.1 MGP_C57BL6NJ_G0007037.1 mouse_genomes_project 6 10044460 10094463 + lincRNA lincRNA MGP_C57BL6NJ_T0101813.1 MGP_C57BL6NJ_G0039859.1 mouse_genomes_project 6 97634928 97635058 + Gm22312 snoRNA snoRNA MGP_C57BL6NJ_T0000222.1 MGP_C57BL6NJ_G0000166.1 mouse_genomes_project 6 70357640 70358118 + MGP_C57BL6NJ_P0000222 Igkv20-101-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0100543.1 MGP_C57BL6NJ_G0038589.1 mouse_genomes_project 6 117978061 117978164 + Gm27944 snRNA snRNA MGP_C57BL6NJ_T0077950.1 MGP_C57BL6NJ_G0031158.1 mouse_genomes_project 6 49377200 49410236 - MGP_C57BL6NJ_P0077950 Tra2a protein_coding protein_coding MGP_C57BL6NJ_T0077951.1 MGP_C57BL6NJ_G0031158.1 mouse_genomes_project 6 49377200 49410237 - MGP_C57BL6NJ_P0077951 Tra2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077952.1 MGP_C57BL6NJ_G0031158.1 mouse_genomes_project 6 49377204 49410259 - Tra2a protein_coding retained_intron MGP_C57BL6NJ_T0077953.1 MGP_C57BL6NJ_G0031158.1 mouse_genomes_project 6 49377204 49410256 - MGP_C57BL6NJ_P0077953 Tra2a protein_coding protein_coding MGP_C57BL6NJ_T0077954.1 MGP_C57BL6NJ_G0031158.1 mouse_genomes_project 6 49406468 49410256 - Tra2a protein_coding retained_intron MGP_C57BL6NJ_T0081218.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154832 146188138 + Dera protein_coding retained_intron MGP_C57BL6NJ_T0081219.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154832 146162526 + Dera protein_coding processed_transcript MGP_C57BL6NJ_T0081220.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154842 146245026 + MGP_C57BL6NJ_P0081220 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081221.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154844 146245463 + MGP_C57BL6NJ_P0081221 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081222.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154862 146265592 + MGP_C57BL6NJ_P0081222 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081223.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154877 146168219 + Dera protein_coding processed_transcript MGP_C57BL6NJ_T0081224.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146154901 146245005 + MGP_C57BL6NJ_P0081224 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081225.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146162229 146162527 + Dera protein_coding TEC MGP_C57BL6NJ_T0081226.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146178358 146188963 + Dera protein_coding processed_transcript MGP_C57BL6NJ_T0081227.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146183978 146185643 + Dera protein_coding retained_intron MGP_C57BL6NJ_T0081228.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146186808 146245052 + MGP_C57BL6NJ_P0081228 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081229.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146202807 146215501 + Dera protein_coding processed_transcript MGP_C57BL6NJ_T0081230.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146235554 146265066 + MGP_C57BL6NJ_P0081230 Dera protein_coding protein_coding MGP_C57BL6NJ_T0081231.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146243183 146245649 + Dera protein_coding retained_intron MGP_C57BL6NJ_T0081232.1 MGP_C57BL6NJ_G0031882.1 mouse_genomes_project 6 146244420 146251270 + MGP_C57BL6NJ_P0081232 Dera protein_coding protein_coding MGP_C57BL6NJ_T0002332.1 MGP_C57BL6NJ_G0002222.1 mouse_genomes_project 6 158526772 158529716 - TEC TEC MGP_C57BL6NJ_T0077676.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41797354 41816436 + MGP_C57BL6NJ_P0077676 Casp2 protein_coding protein_coding MGP_C57BL6NJ_T0077677.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41797425 41803050 + Casp2 protein_coding retained_intron MGP_C57BL6NJ_T0077678.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41797489 41814420 + MGP_C57BL6NJ_P0077678 Casp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077679.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41799760 41800400 + Casp2 protein_coding processed_transcript MGP_C57BL6NJ_T0077680.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41800379 41803535 + Casp2 protein_coding retained_intron MGP_C57BL6NJ_T0077681.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41803212 41813825 + Casp2 protein_coding processed_transcript MGP_C57BL6NJ_T0077682.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41810414 41814461 + Casp2 protein_coding retained_intron MGP_C57BL6NJ_T0077683.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41813564 41814418 + Casp2 protein_coding processed_transcript MGP_C57BL6NJ_T0077684.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41813708 41814569 + Casp2 protein_coding processed_transcript MGP_C57BL6NJ_T0077685.1 MGP_C57BL6NJ_G0031082.1 mouse_genomes_project 6 41813734 41814695 + Casp2 protein_coding processed_transcript MGP_C57BL6NJ_T0015826.1 MGP_C57BL6NJ_G0013871.1 mouse_genomes_project 6 69017478 69018060 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079313.1 MGP_C57BL6NJ_G0031458.1 mouse_genomes_project 6 93616511 93617444 + MGP_C57BL6NJ_P0079313 Vmn1r40 protein_coding protein_coding MGP_C57BL6NJ_T0079616.1 MGP_C57BL6NJ_G0031529.1 mouse_genomes_project 6 106909251 106912800 - Cntn3 protein_coding retained_intron MGP_C57BL6NJ_T0079617.1 MGP_C57BL6NJ_G0031529.1 mouse_genomes_project 6 106909900 107337830 - MGP_C57BL6NJ_P0079617 Cntn3 protein_coding protein_coding MGP_C57BL6NJ_T0079618.1 MGP_C57BL6NJ_G0031529.1 mouse_genomes_project 6 106909902 107221500 - MGP_C57BL6NJ_P0079618 Cntn3 protein_coding protein_coding MGP_C57BL6NJ_T0103312.1 MGP_C57BL6NJ_G0041105.1 mouse_genomes_project 6 141577773 141579794 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079514.1 MGP_C57BL6NJ_G0031509.1 mouse_genomes_project 6 100416982 100418729 - MGP_C57BL6NJ_P0079514 1700123L14Rik protein_coding protein_coding MGP_C57BL6NJ_T0080959.1 MGP_C57BL6NJ_G0031792.1 mouse_genomes_project 6 136823001 136829777 - MGP_C57BL6NJ_P0080959 Klrc3 protein_coding protein_coding MGP_C57BL6NJ_T0102304.1 MGP_C57BL6NJ_G0040274.1 mouse_genomes_project 6 154430237 154444821 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102305.1 MGP_C57BL6NJ_G0040274.1 mouse_genomes_project 6 154430238 154434882 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102306.1 MGP_C57BL6NJ_G0040274.1 mouse_genomes_project 6 154432949 154434691 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102307.1 MGP_C57BL6NJ_G0040274.1 mouse_genomes_project 6 154434067 154434808 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0077331.1 MGP_C57BL6NJ_G0030991.1 mouse_genomes_project 6 32899430 33008513 + MGP_C57BL6NJ_P0077331 Lrguk protein_coding protein_coding MGP_C57BL6NJ_T0077332.1 MGP_C57BL6NJ_G0030991.1 mouse_genomes_project 6 32899432 32920803 + MGP_C57BL6NJ_P0077332 Lrguk protein_coding protein_coding MGP_C57BL6NJ_T0077333.1 MGP_C57BL6NJ_G0030991.1 mouse_genomes_project 6 32909290 32920818 + MGP_C57BL6NJ_P0077333 Lrguk protein_coding protein_coding MGP_C57BL6NJ_T0002179.1 MGP_C57BL6NJ_G0002070.1 mouse_genomes_project 6 86358946 86360464 - TEC TEC MGP_C57BL6NJ_T0077876.1 MGP_C57BL6NJ_G0031139.1 mouse_genomes_project 6 48695060 48701982 + MGP_C57BL6NJ_P0077876 AI854703 protein_coding protein_coding MGP_C57BL6NJ_T0077877.1 MGP_C57BL6NJ_G0031139.1 mouse_genomes_project 6 48695519 48697760 + MGP_C57BL6NJ_P0077877 AI854703 protein_coding protein_coding MGP_C57BL6NJ_T0077878.1 MGP_C57BL6NJ_G0031139.1 mouse_genomes_project 6 48695577 48697760 + MGP_C57BL6NJ_P0077878 AI854703 protein_coding protein_coding MGP_C57BL6NJ_T0077879.1 MGP_C57BL6NJ_G0031139.1 mouse_genomes_project 6 48696231 48701986 + MGP_C57BL6NJ_P0077879 AI854703 protein_coding protein_coding MGP_C57BL6NJ_T0078269.1 MGP_C57BL6NJ_G0031250.1 mouse_genomes_project 6 58898628 58899658 - MGP_C57BL6NJ_P0078269 protein_coding protein_coding MGP_C57BL6NJ_T0078270.1 MGP_C57BL6NJ_G0031250.1 mouse_genomes_project 6 58899283 59372574 - MGP_C57BL6NJ_P0078270 protein_coding protein_coding MGP_C57BL6NJ_T0078271.1 MGP_C57BL6NJ_G0031250.1 mouse_genomes_project 6 58899283 59372528 - MGP_C57BL6NJ_P0078271 protein_coding protein_coding MGP_C57BL6NJ_T0078272.1 MGP_C57BL6NJ_G0031250.1 mouse_genomes_project 6 58899283 59372605 - MGP_C57BL6NJ_P0078272 protein_coding protein_coding MGP_C57BL6NJ_T0005143.1 MGP_C57BL6NJ_G0004404.1 mouse_genomes_project 6 75185626 75191503 + Gm15402 antisense antisense MGP_C57BL6NJ_T0079605.1 MGP_C57BL6NJ_G0031526.1 mouse_genomes_project 6 105339825 105461707 + MGP_C57BL6NJ_P0079605 Gxylt2 protein_coding protein_coding MGP_C57BL6NJ_T0079606.1 MGP_C57BL6NJ_G0031526.1 mouse_genomes_project 6 105339846 105342766 + Gxylt2 protein_coding processed_transcript MGP_C57BL6NJ_T0008843.1 MGP_C57BL6NJ_G0007149.1 mouse_genomes_project 6 91967219 91969504 - Gm44246 lincRNA lincRNA MGP_C57BL6NJ_T0011918.1 MGP_C57BL6NJ_G0010003.1 mouse_genomes_project 6 71550762 71561619 + Rn7s6 misc_RNA misc_RNA MGP_C57BL6NJ_T0016004.1 MGP_C57BL6NJ_G0014049.1 mouse_genomes_project 6 131839996 131845953 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008703.1 MGP_C57BL6NJ_G0007046.1 mouse_genomes_project 6 19907611 19914533 - Gm3289 lincRNA lincRNA MGP_C57BL6NJ_T0002212.1 MGP_C57BL6NJ_G0002103.1 mouse_genomes_project 6 92630638 92634407 + TEC TEC MGP_C57BL6NJ_T0076849.1 MGP_C57BL6NJ_G0030903.1 mouse_genomes_project 6 14497153 14565693 - MGP_C57BL6NJ_P0076849 Tfec protein_coding protein_coding MGP_C57BL6NJ_T0076850.1 MGP_C57BL6NJ_G0030903.1 mouse_genomes_project 6 14497168 14565651 - MGP_C57BL6NJ_P0076850 Tfec protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076851.1 MGP_C57BL6NJ_G0030903.1 mouse_genomes_project 6 14498472 14499044 - MGP_C57BL6NJ_P0076851 Tfec protein_coding protein_coding MGP_C57BL6NJ_T0076852.1 MGP_C57BL6NJ_G0030903.1 mouse_genomes_project 6 14505196 14565693 - Tfec protein_coding retained_intron MGP_C57BL6NJ_T0076853.1 MGP_C57BL6NJ_G0030903.1 mouse_genomes_project 6 14507977 14509777 - Tfec protein_coding retained_intron MGP_C57BL6NJ_T0008899.1 MGP_C57BL6NJ_G0007192.1 mouse_genomes_project 6 124112198 124114546 + Gm30557 lincRNA lincRNA MGP_C57BL6NJ_T0078137.1 MGP_C57BL6NJ_G0031200.1 mouse_genomes_project 6 55260128 55283552 + MGP_C57BL6NJ_P0078137 Mturn protein_coding protein_coding MGP_C57BL6NJ_T0078138.1 MGP_C57BL6NJ_G0031200.1 mouse_genomes_project 6 55260258 55280842 + MGP_C57BL6NJ_P0078138 Mturn protein_coding protein_coding MGP_C57BL6NJ_T0078139.1 MGP_C57BL6NJ_G0031200.1 mouse_genomes_project 6 55260306 55268025 + Mturn protein_coding retained_intron MGP_C57BL6NJ_T0100525.1 MGP_C57BL6NJ_G0038571.1 mouse_genomes_project 6 65775917 65776020 + Gm25205 snRNA snRNA MGP_C57BL6NJ_T0008851.1 MGP_C57BL6NJ_G0007154.1 mouse_genomes_project 6 93158790 93175005 - Gm44205 lincRNA lincRNA MGP_C57BL6NJ_T0008852.1 MGP_C57BL6NJ_G0007154.1 mouse_genomes_project 6 93158796 93162487 - Gm44205 lincRNA lincRNA MGP_C57BL6NJ_T0008853.1 MGP_C57BL6NJ_G0007154.1 mouse_genomes_project 6 93173930 93174974 - Gm44205 lincRNA lincRNA MGP_C57BL6NJ_T0081537.1 MGP_C57BL6NJ_G0031938.1 mouse_genomes_project 6 156025188 156029282 - MGP_C57BL6NJ_P0081537 1700034J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0081538.1 MGP_C57BL6NJ_G0031938.1 mouse_genomes_project 6 156026161 156029274 - MGP_C57BL6NJ_P0081538 1700034J05Rik protein_coding protein_coding MGP_C57BL6NJ_T0015682.1 MGP_C57BL6NJ_G0013727.1 mouse_genomes_project 6 21325620 21327678 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015839.1 MGP_C57BL6NJ_G0013884.1 mouse_genomes_project 6 70153547 70153947 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079403.1 MGP_C57BL6NJ_G0031486.1 mouse_genomes_project 6 95491385 95506146 + MGP_C57BL6NJ_P0079403 Tmem43 protein_coding protein_coding MGP_C57BL6NJ_T0079404.1 MGP_C57BL6NJ_G0031486.1 mouse_genomes_project 6 95491409 95495316 + Tmem43 protein_coding retained_intron MGP_C57BL6NJ_T0079405.1 MGP_C57BL6NJ_G0031486.1 mouse_genomes_project 6 95491433 95492158 + Tmem43 protein_coding processed_transcript MGP_C57BL6NJ_T0079406.1 MGP_C57BL6NJ_G0031486.1 mouse_genomes_project 6 95491441 95496823 + Tmem43 protein_coding retained_intron MGP_C57BL6NJ_T0079407.1 MGP_C57BL6NJ_G0031486.1 mouse_genomes_project 6 95494282 95495940 + Tmem43 protein_coding processed_transcript MGP_C57BL6NJ_T0015641.1 MGP_C57BL6NJ_G0013686.1 mouse_genomes_project 6 5018808 5030035 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080104.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123680678 123689434 + Zfp239 protein_coding processed_transcript MGP_C57BL6NJ_T0080105.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681655 123689395 + Zfp239 protein_coding processed_transcript MGP_C57BL6NJ_T0080106.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681655 123691947 + MGP_C57BL6NJ_P0080106 Zfp239 protein_coding protein_coding MGP_C57BL6NJ_T0080107.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681655 123691421 + MGP_C57BL6NJ_P0080107 Zfp239 protein_coding protein_coding MGP_C57BL6NJ_T0080108.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681662 123687742 + Zfp239 protein_coding retained_intron MGP_C57BL6NJ_T0080109.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681662 123689390 + Zfp239 protein_coding processed_transcript MGP_C57BL6NJ_T0080110.1 MGP_C57BL6NJ_G0031617.1 mouse_genomes_project 6 123681662 123689123 + Zfp239 protein_coding processed_transcript MGP_C57BL6NJ_T0016081.1 MGP_C57BL6NJ_G0014126.1 mouse_genomes_project 6 148643206 148643578 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016029.1 MGP_C57BL6NJ_G0014074.1 mouse_genomes_project 6 135733245 135733402 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015996.1 MGP_C57BL6NJ_G0014041.1 mouse_genomes_project 6 128958149 128958909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005283.1 MGP_C57BL6NJ_G0004502.1 mouse_genomes_project 6 153707864 153749486 + Sox5os4 antisense antisense MGP_C57BL6NJ_T0099561.1 MGP_C57BL6NJ_G0037608.1 mouse_genomes_project 6 40548170 40558460 + Gm37610 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0016071.1 MGP_C57BL6NJ_G0014116.1 mouse_genomes_project 6 141930574 141932942 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008827.1 MGP_C57BL6NJ_G0007136.1 mouse_genomes_project 6 86146268 86150258 - 2310069B03Rik lincRNA lincRNA MGP_C57BL6NJ_T0008828.1 MGP_C57BL6NJ_G0007136.1 mouse_genomes_project 6 86146931 86150258 - 2310069B03Rik lincRNA lincRNA MGP_C57BL6NJ_T0008829.1 MGP_C57BL6NJ_G0007136.1 mouse_genomes_project 6 86147825 86150237 - 2310069B03Rik lincRNA lincRNA MGP_C57BL6NJ_T0002197.1 MGP_C57BL6NJ_G0002088.1 mouse_genomes_project 6 91050661 91051443 - TEC TEC MGP_C57BL6NJ_T0100529.1 MGP_C57BL6NJ_G0038575.1 mouse_genomes_project 6 73374438 73374593 - Gm23485 snRNA snRNA MGP_C57BL6NJ_T0079888.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119288576 119597752 - MGP_C57BL6NJ_P0079888 Atp2b2 protein_coding protein_coding MGP_C57BL6NJ_T0079889.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119290414 119436975 - MGP_C57BL6NJ_P0079889 Atp2b2 protein_coding protein_coding MGP_C57BL6NJ_T0079890.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119290415 119597752 - MGP_C57BL6NJ_P0079890 Atp2b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079891.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119291811 119436975 - MGP_C57BL6NJ_P0079891 Atp2b2 protein_coding protein_coding MGP_C57BL6NJ_T0079892.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119293039 119483550 - MGP_C57BL6NJ_P0079892 Atp2b2 protein_coding protein_coding MGP_C57BL6NJ_T0079893.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119349008 119436806 - Atp2b2 protein_coding retained_intron MGP_C57BL6NJ_T0079894.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119387992 119456000 - Atp2b2 protein_coding processed_transcript MGP_C57BL6NJ_T0079895.1 MGP_C57BL6NJ_G0031577.1 mouse_genomes_project 6 119388210 119598194 - Atp2b2 protein_coding processed_transcript MGP_C57BL6NJ_T0080741.1 MGP_C57BL6NJ_G0031736.1 mouse_genomes_project 6 132905850 132976365 - MGP_C57BL6NJ_P0080741 Ntf3 protein_coding protein_coding MGP_C57BL6NJ_T0080742.1 MGP_C57BL6NJ_G0031736.1 mouse_genomes_project 6 132905850 132974610 - MGP_C57BL6NJ_P0080742 Ntf3 protein_coding protein_coding MGP_C57BL6NJ_T0080743.1 MGP_C57BL6NJ_G0031736.1 mouse_genomes_project 6 132905850 132976560 - MGP_C57BL6NJ_P0080743 Ntf3 protein_coding protein_coding MGP_C57BL6NJ_T0002292.1 MGP_C57BL6NJ_G0002182.1 mouse_genomes_project 6 136689415 136693658 + TEC TEC MGP_C57BL6NJ_T0011057.1 MGP_C57BL6NJ_G0009142.1 mouse_genomes_project 6 124296621 124296704 + Gm25953 miRNA miRNA MGP_C57BL6NJ_T0015799.1 MGP_C57BL6NJ_G0013844.1 mouse_genomes_project 6 66599066 66599860 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011039.1 MGP_C57BL6NJ_G0009124.1 mouse_genomes_project 6 91881134 91881265 - Mir6376 miRNA miRNA MGP_C57BL6NJ_T0016077.1 MGP_C57BL6NJ_G0014122.1 mouse_genomes_project 6 144777307 144778372 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005074.1 MGP_C57BL6NJ_G0004350.1 mouse_genomes_project 6 16049258 16071666 - Gm15592 antisense antisense MGP_C57BL6NJ_T0000057.1 MGP_C57BL6NJ_G0000046.1 mouse_genomes_project 6 73024218 73024256 + MGP_C57BL6NJ_P0000057 Igkj4 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0000461.1 MGP_C57BL6NJ_G0000380.1 mouse_genomes_project 6 72818628 72819206 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079625.1 MGP_C57BL6NJ_G0031531.1 mouse_genomes_project 6 109360335 109529751 + MGP_C57BL6NJ_P0079625 Cntn6 protein_coding protein_coding MGP_C57BL6NJ_T0079626.1 MGP_C57BL6NJ_G0031531.1 mouse_genomes_project 6 109360467 109767350 + MGP_C57BL6NJ_P0079626 Cntn6 protein_coding protein_coding MGP_C57BL6NJ_T0079627.1 MGP_C57BL6NJ_G0031531.1 mouse_genomes_project 6 109360599 109445189 + Cntn6 protein_coding retained_intron MGP_C57BL6NJ_T0079628.1 MGP_C57BL6NJ_G0031531.1 mouse_genomes_project 6 109360793 109767345 + MGP_C57BL6NJ_P0079628 Cntn6 protein_coding protein_coding MGP_C57BL6NJ_T0079629.1 MGP_C57BL6NJ_G0031531.1 mouse_genomes_project 6 109441609 109767351 + MGP_C57BL6NJ_P0079629 Cntn6 protein_coding protein_coding MGP_C57BL6NJ_T0077637.1 MGP_C57BL6NJ_G0031063.1 mouse_genomes_project 6 40921568 40923082 - MGP_C57BL6NJ_P0077637 protein_coding protein_coding MGP_C57BL6NJ_T0080966.1 MGP_C57BL6NJ_G0031796.1 mouse_genomes_project 6 136973061 136991815 - MGP_C57BL6NJ_P0080966 Klri2 protein_coding protein_coding MGP_C57BL6NJ_T0015963.1 MGP_C57BL6NJ_G0014008.1 mouse_genomes_project 6 120318632 120323358 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079863.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119169387 119236237 + MGP_C57BL6NJ_P0079863 Irak2 protein_coding protein_coding MGP_C57BL6NJ_T0079864.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119169408 119235017 + MGP_C57BL6NJ_P0079864 Irak2 protein_coding protein_coding MGP_C57BL6NJ_T0079865.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119169421 119205643 + Irak2 protein_coding retained_intron MGP_C57BL6NJ_T0079866.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119169448 119236237 + MGP_C57BL6NJ_P0079866 Irak2 protein_coding protein_coding MGP_C57BL6NJ_T0079867.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119169456 119212655 + MGP_C57BL6NJ_P0079867 Irak2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079868.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119208471 119212561 + Irak2 protein_coding processed_transcript MGP_C57BL6NJ_T0079869.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119209399 119235017 + Irak2 protein_coding retained_intron MGP_C57BL6NJ_T0079870.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119231952 119235132 + Irak2 protein_coding retained_intron MGP_C57BL6NJ_T0079871.1 MGP_C57BL6NJ_G0031573.1 mouse_genomes_project 6 119233966 119235226 + Irak2 protein_coding processed_transcript MGP_C57BL6NJ_T0078649.1 MGP_C57BL6NJ_G0031335.1 mouse_genomes_project 6 81337949 81340898 + MGP_C57BL6NJ_P0078649 Reg2 protein_coding protein_coding MGP_C57BL6NJ_T0077905.1 MGP_C57BL6NJ_G0031147.1 mouse_genomes_project 6 48824846 48834575 + MGP_C57BL6NJ_P0077905 Gimap5 protein_coding protein_coding MGP_C57BL6NJ_T0077906.1 MGP_C57BL6NJ_G0031147.1 mouse_genomes_project 6 48824847 48826135 + Gimap5 protein_coding processed_transcript MGP_C57BL6NJ_T0077907.1 MGP_C57BL6NJ_G0031147.1 mouse_genomes_project 6 48824848 48826162 + Gimap5 protein_coding processed_transcript MGP_C57BL6NJ_T0077908.1 MGP_C57BL6NJ_G0031147.1 mouse_genomes_project 6 48824948 48827276 + Gimap5 protein_coding retained_intron MGP_C57BL6NJ_T0002059.1 MGP_C57BL6NJ_G0001950.1 mouse_genomes_project 6 4414380 4417058 + TEC TEC MGP_C57BL6NJ_T0078396.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68833691 68867516 + Serbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0078397.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68862867 68893963 + MGP_C57BL6NJ_P0078397 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078398.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863226 68880556 + MGP_C57BL6NJ_P0078398 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078399.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863231 68865598 + Serbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078400.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863248 68880316 + MGP_C57BL6NJ_P0078400 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078401.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863253 68880307 + MGP_C57BL6NJ_P0078401 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078402.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863254 68870254 + Serbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078403.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863254 68880561 + MGP_C57BL6NJ_P0078403 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078404.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863254 68880307 + MGP_C57BL6NJ_P0078404 Serbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078405.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863259 68870849 + Serbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078406.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863281 68874025 + MGP_C57BL6NJ_P0078406 Serbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078407.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863314 68880274 + MGP_C57BL6NJ_P0078407 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078408.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863322 68868484 + Serbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078409.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863500 68869099 + MGP_C57BL6NJ_P0078409 Serbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078410.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68863573 68878073 + MGP_C57BL6NJ_P0078410 Serbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078411.1 MGP_C57BL6NJ_G0031283.1 mouse_genomes_project 6 68868122 68878090 + Serbp1 protein_coding retained_intron MGP_C57BL6NJ_T0080048.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064091 122151795 + MGP_C57BL6NJ_P0080048 protein_coding protein_coding MGP_C57BL6NJ_T0080049.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064100 122151795 + MGP_C57BL6NJ_P0080049 protein_coding protein_coding MGP_C57BL6NJ_T0080050.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064111 122148008 + MGP_C57BL6NJ_P0080050 protein_coding protein_coding MGP_C57BL6NJ_T0080051.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064120 122147996 + MGP_C57BL6NJ_P0080051 protein_coding protein_coding MGP_C57BL6NJ_T0080052.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064131 122119102 + MGP_C57BL6NJ_P0080052 protein_coding protein_coding MGP_C57BL6NJ_T0080053.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122064358 122151798 + MGP_C57BL6NJ_P0080053 protein_coding protein_coding MGP_C57BL6NJ_T0080054.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122089644 122092751 + protein_coding retained_intron MGP_C57BL6NJ_T0080055.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122090151 122145683 + MGP_C57BL6NJ_P0080055 protein_coding protein_coding MGP_C57BL6NJ_T0080056.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122090192 122119163 + MGP_C57BL6NJ_P0080056 protein_coding protein_coding MGP_C57BL6NJ_T0080057.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122118992 122143686 + protein_coding retained_intron MGP_C57BL6NJ_T0080058.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122129179 122148479 + MGP_C57BL6NJ_P0080058 protein_coding protein_coding MGP_C57BL6NJ_T0080059.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122129205 122148389 + protein_coding retained_intron MGP_C57BL6NJ_T0080060.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122134806 122144112 + protein_coding processed_transcript MGP_C57BL6NJ_T0080061.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122145246 122148037 + protein_coding processed_transcript MGP_C57BL6NJ_T0080062.1 MGP_C57BL6NJ_G0031605.1 mouse_genomes_project 6 122147431 122148560 + protein_coding processed_transcript MGP_C57BL6NJ_T0080023.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121689725 121819169 - MGP_C57BL6NJ_P0080023 Tmcc1 protein_coding protein_coding MGP_C57BL6NJ_T0080024.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121692279 121786718 - MGP_C57BL6NJ_P0080024 Tmcc1 protein_coding protein_coding MGP_C57BL6NJ_T0080025.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121692453 121814923 - MGP_C57BL6NJ_P0080025 Tmcc1 protein_coding protein_coding MGP_C57BL6NJ_T0080026.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121692727 121815033 - MGP_C57BL6NJ_P0080026 Tmcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080027.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121693105 121749495 - MGP_C57BL6NJ_P0080027 Tmcc1 protein_coding protein_coding MGP_C57BL6NJ_T0080028.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121714860 121814506 - MGP_C57BL6NJ_P0080028 Tmcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080029.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121725699 121730300 - Tmcc1 protein_coding retained_intron MGP_C57BL6NJ_T0080030.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121783778 121789245 - Tmcc1 protein_coding retained_intron MGP_C57BL6NJ_T0080031.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121812279 121859775 - MGP_C57BL6NJ_P0080031 Tmcc1 protein_coding protein_coding MGP_C57BL6NJ_T0080032.1 MGP_C57BL6NJ_G0031601.1 mouse_genomes_project 6 121814122 121815725 - Tmcc1 protein_coding retained_intron MGP_C57BL6NJ_T0080635.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743526 131752685 + MGP_C57BL6NJ_P0080635 Ing4 protein_coding protein_coding MGP_C57BL6NJ_T0080636.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743602 131749868 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0080637.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743602 131752947 + MGP_C57BL6NJ_P0080637 Ing4 protein_coding protein_coding MGP_C57BL6NJ_T0080638.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743614 131751255 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0080639.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743627 131752491 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0080640.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131743627 131752948 + MGP_C57BL6NJ_P0080640 Ing4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080641.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131747729 131751689 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0080642.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131749204 131752948 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0080643.1 MGP_C57BL6NJ_G0031716.1 mouse_genomes_project 6 131751322 131752301 + Ing4 protein_coding retained_intron MGP_C57BL6NJ_T0077126.1 MGP_C57BL6NJ_G0030960.1 mouse_genomes_project 6 28012210 28018021 + Flnc protein_coding retained_intron MGP_C57BL6NJ_T0077127.1 MGP_C57BL6NJ_G0030960.1 mouse_genomes_project 6 28012230 28040705 + MGP_C57BL6NJ_P0077127 Flnc protein_coding protein_coding MGP_C57BL6NJ_T0077128.1 MGP_C57BL6NJ_G0030960.1 mouse_genomes_project 6 28012230 28040705 + MGP_C57BL6NJ_P0077128 Flnc protein_coding protein_coding MGP_C57BL6NJ_T0011011.1 MGP_C57BL6NJ_G0009096.1 mouse_genomes_project 6 34503974 34504070 - Gm23053 miRNA miRNA MGP_C57BL6NJ_T0015898.1 MGP_C57BL6NJ_G0013943.1 mouse_genomes_project 6 95462130 95463970 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079941.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120737412 120891799 + Syn2 protein_coding retained_intron MGP_C57BL6NJ_T0079942.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120737412 120893267 + MGP_C57BL6NJ_P0079942 Syn2 protein_coding protein_coding MGP_C57BL6NJ_T0079943.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120737427 120898714 + MGP_C57BL6NJ_P0079943 Syn2 protein_coding protein_coding MGP_C57BL6NJ_T0079944.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120737460 120893267 + MGP_C57BL6NJ_P0079944 Syn2 protein_coding protein_coding MGP_C57BL6NJ_T0079945.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120824221 120856466 + Syn2 protein_coding processed_transcript MGP_C57BL6NJ_T0079947.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120851347 120893267 + Syn2 protein_coding processed_transcript MGP_C57BL6NJ_T0079950.1 MGP_C57BL6NJ_G0031584.1 mouse_genomes_project 6 120867185 120895417 + Syn2 protein_coding retained_intron MGP_C57BL6NJ_T0002207.1 MGP_C57BL6NJ_G0002098.1 mouse_genomes_project 6 91997099 91997357 - TEC TEC MGP_C57BL6NJ_T0078041.1 MGP_C57BL6NJ_G0031180.1 mouse_genomes_project 6 52579215 52582049 - MGP_C57BL6NJ_P0078041 Hoxa5 protein_coding protein_coding MGP_C57BL6NJ_T0011070.1 MGP_C57BL6NJ_G0009155.1 mouse_genomes_project 6 136096556 136099511 - miRNA miRNA MGP_C57BL6NJ_T0016008.1 MGP_C57BL6NJ_G0014053.1 mouse_genomes_project 6 133155660 133156073 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008813.1 MGP_C57BL6NJ_G0007125.1 mouse_genomes_project 6 75475023 75479024 + Gm26640 lincRNA lincRNA MGP_C57BL6NJ_T0081025.1 MGP_C57BL6NJ_G0031830.1 mouse_genomes_project 6 140613175 140614325 + MGP_C57BL6NJ_P0081025 Tas2r117 protein_coding protein_coding MGP_C57BL6NJ_T0103292.1 MGP_C57BL6NJ_G0041085.1 mouse_genomes_project 6 137818508 137828205 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008945.1 MGP_C57BL6NJ_G0007227.1 mouse_genomes_project 6 151986276 152037632 - Gm31108 lincRNA lincRNA MGP_C57BL6NJ_T0077186.1 MGP_C57BL6NJ_G0030969.1 mouse_genomes_project 6 28536767 28585640 + MGP_C57BL6NJ_P0077186 Strip2 protein_coding protein_coding MGP_C57BL6NJ_T0077187.1 MGP_C57BL6NJ_G0030969.1 mouse_genomes_project 6 28536768 28569609 + Strip2 protein_coding retained_intron MGP_C57BL6NJ_T0077188.1 MGP_C57BL6NJ_G0030969.1 mouse_genomes_project 6 28536768 28583733 + Strip2 protein_coding retained_intron MGP_C57BL6NJ_T0077189.1 MGP_C57BL6NJ_G0030969.1 mouse_genomes_project 6 28536768 28585646 + MGP_C57BL6NJ_P0077189 Strip2 protein_coding protein_coding MGP_C57BL6NJ_T0077190.1 MGP_C57BL6NJ_G0030969.1 mouse_genomes_project 6 28536768 28571131 + MGP_C57BL6NJ_P0077190 Strip2 protein_coding protein_coding MGP_C57BL6NJ_T0005098.1 MGP_C57BL6NJ_G0004371.1 mouse_genomes_project 6 38733326 38734342 + Gm10244 antisense antisense MGP_C57BL6NJ_T0005099.1 MGP_C57BL6NJ_G0004371.1 mouse_genomes_project 6 38733817 38734734 + Gm10244 antisense antisense MGP_C57BL6NJ_T0099128.1 MGP_C57BL6NJ_G0037192.1 mouse_genomes_project 6 10181239 10181359 + n-R5s160 rRNA rRNA MGP_C57BL6NJ_T0077715.1 MGP_C57BL6NJ_G0031090.1 mouse_genomes_project 6 42002142 42004559 - MGP_C57BL6NJ_P0077715 Olfr458 protein_coding protein_coding MGP_C57BL6NJ_T0000052.1 MGP_C57BL6NJ_G0000043.1 mouse_genomes_project 6 73023232 73023270 + MGP_C57BL6NJ_P0000052 Igkj1 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0002084.1 MGP_C57BL6NJ_G0001975.1 mouse_genomes_project 6 29874128 29876420 - TEC TEC MGP_C57BL6NJ_T0002090.1 MGP_C57BL6NJ_G0001981.1 mouse_genomes_project 6 35213838 35216231 - TEC TEC MGP_C57BL6NJ_T0080581.1 MGP_C57BL6NJ_G0031708.1 mouse_genomes_project 6 131549394 131554865 - MGP_C57BL6NJ_P0080581 Gpr162 protein_coding protein_coding MGP_C57BL6NJ_T0080582.1 MGP_C57BL6NJ_G0031708.1 mouse_genomes_project 6 131549397 131554660 - Gpr162 protein_coding retained_intron MGP_C57BL6NJ_T0080583.1 MGP_C57BL6NJ_G0031708.1 mouse_genomes_project 6 131549398 131554931 - MGP_C57BL6NJ_P0080583 Gpr162 protein_coding protein_coding MGP_C57BL6NJ_T0080584.1 MGP_C57BL6NJ_G0031708.1 mouse_genomes_project 6 131552678 131554660 - Gpr162 protein_coding processed_transcript MGP_C57BL6NJ_T0015852.1 MGP_C57BL6NJ_G0013897.1 mouse_genomes_project 6 74331758 74332704 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011915.1 MGP_C57BL6NJ_G0010000.1 mouse_genomes_project 6 52646679 52647040 + Gm27383 misc_RNA misc_RNA MGP_C57BL6NJ_T0015821.1 MGP_C57BL6NJ_G0013866.1 mouse_genomes_project 6 68793847 68794312 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018780.1 MGP_C57BL6NJ_G0016042.1 mouse_genomes_project 6 136700006 136701874 - 1700101I11Rik processed_transcript TEC MGP_C57BL6NJ_T0018781.1 MGP_C57BL6NJ_G0016042.1 mouse_genomes_project 6 136700150 136701341 - 1700101I11Rik processed_transcript antisense MGP_C57BL6NJ_T0000275.1 MGP_C57BL6NJ_G0000205.1 mouse_genomes_project 6 72254696 72255256 - MGP_C57BL6NJ_P0000275 Igkv8-30 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015947.1 MGP_C57BL6NJ_G0013992.1 mouse_genomes_project 6 114806217 114806470 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077573.1 MGP_C57BL6NJ_G0031039.1 mouse_genomes_project 6 38945480 39092995 - MGP_C57BL6NJ_P0077573 Braf protein_coding protein_coding MGP_C57BL6NJ_T0077574.1 MGP_C57BL6NJ_G0031039.1 mouse_genomes_project 6 38956356 39092725 - MGP_C57BL6NJ_P0077574 Braf protein_coding protein_coding MGP_C57BL6NJ_T0077575.1 MGP_C57BL6NJ_G0031039.1 mouse_genomes_project 6 38982449 38987944 - Braf protein_coding retained_intron MGP_C57BL6NJ_T0077576.1 MGP_C57BL6NJ_G0031039.1 mouse_genomes_project 6 38983464 38986412 - Braf protein_coding retained_intron MGP_C57BL6NJ_T0077577.1 MGP_C57BL6NJ_G0031039.1 mouse_genomes_project 6 38994735 39007920 - Braf protein_coding retained_intron MGP_C57BL6NJ_T0077999.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51771433 51780396 - MGP_C57BL6NJ_P0077999 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078000.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51771622 51780349 - MGP_C57BL6NJ_P0078000 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078001.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51771625 51780347 - MGP_C57BL6NJ_P0078001 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078002.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51771625 51780347 - MGP_C57BL6NJ_P0078002 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078003.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51771646 51773686 - Hnrnpa2b1 protein_coding retained_intron MGP_C57BL6NJ_T0078004.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51773261 51780328 - MGP_C57BL6NJ_P0078004 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078005.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51773261 51780274 - MGP_C57BL6NJ_P0078005 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078006.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51773261 51780274 - MGP_C57BL6NJ_P0078006 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078007.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51773301 51774662 - Hnrnpa2b1 protein_coding retained_intron MGP_C57BL6NJ_T0078008.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51773973 51777203 - MGP_C57BL6NJ_P0078008 Hnrnpa2b1 protein_coding protein_coding MGP_C57BL6NJ_T0078009.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51775133 51776739 - Hnrnpa2b1 protein_coding retained_intron MGP_C57BL6NJ_T0078010.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51775503 51777169 - Hnrnpa2b1 protein_coding retained_intron MGP_C57BL6NJ_T0078011.1 MGP_C57BL6NJ_G0031170.1 mouse_genomes_project 6 51776319 51780386 - Hnrnpa2b1 protein_coding retained_intron MGP_C57BL6NJ_T0015836.1 MGP_C57BL6NJ_G0013881.1 mouse_genomes_project 6 70038628 70039831 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005103.1 MGP_C57BL6NJ_G0004375.1 mouse_genomes_project 6 40415193 40415491 + Gm29588 antisense antisense MGP_C57BL6NJ_T0080407.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129161580 129177494 - MGP_C57BL6NJ_P0080407 Slc2a3 protein_coding protein_coding MGP_C57BL6NJ_T0080408.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129161597 129177271 - Slc2a3 protein_coding retained_intron MGP_C57BL6NJ_T0080409.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129163702 129177139 - MGP_C57BL6NJ_P0080409 Slc2a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080410.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129165361 129168123 - Slc2a3 protein_coding retained_intron MGP_C57BL6NJ_T0080411.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129171838 129241958 - MGP_C57BL6NJ_P0080411 Slc2a3 protein_coding protein_coding MGP_C57BL6NJ_T0080412.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129172031 129215082 - MGP_C57BL6NJ_P0080412 Slc2a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080413.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129174586 129177011 - MGP_C57BL6NJ_P0080413 Slc2a3 protein_coding protein_coding MGP_C57BL6NJ_T0080414.1 MGP_C57BL6NJ_G0031670.1 mouse_genomes_project 6 129174645 129177669 - MGP_C57BL6NJ_P0080414 Slc2a3 protein_coding protein_coding MGP_C57BL6NJ_T0015632.1 MGP_C57BL6NJ_G0013677.1 mouse_genomes_project 6 3316177 3317016 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076704.1 MGP_C57BL6NJ_G0030873.1 mouse_genomes_project 6 2392985 2408102 - MGP_C57BL6NJ_P0076704 Pdk4 protein_coding protein_coding MGP_C57BL6NJ_T0076705.1 MGP_C57BL6NJ_G0030873.1 mouse_genomes_project 6 2401827 2408054 - MGP_C57BL6NJ_P0076705 Pdk4 protein_coding protein_coding MGP_C57BL6NJ_T0076706.1 MGP_C57BL6NJ_G0030873.1 mouse_genomes_project 6 2405099 2408068 - Pdk4 protein_coding retained_intron MGP_C57BL6NJ_T0101843.1 MGP_C57BL6NJ_G0039889.1 mouse_genomes_project 6 154409548 154409635 + Gm23498 snoRNA snoRNA MGP_C57BL6NJ_T0015793.1 MGP_C57BL6NJ_G0013838.1 mouse_genomes_project 6 65434251 65434416 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099504.1 MGP_C57BL6NJ_G0037557.1 mouse_genomes_project 6 135385313 135386686 - Gm44190 sense_intronic sense_intronic MGP_C57BL6NJ_T0002276.1 MGP_C57BL6NJ_G0002166.1 mouse_genomes_project 6 129253888 129256256 + TEC TEC MGP_C57BL6NJ_T0078765.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86427216 86442720 + MGP_C57BL6NJ_P0078765 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078766.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86427565 86445741 + MGP_C57BL6NJ_P0078766 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078767.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86428842 86445741 + MGP_C57BL6NJ_P0078767 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078768.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86428863 86445741 + MGP_C57BL6NJ_P0078768 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078769.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86429928 86445746 + MGP_C57BL6NJ_P0078769 Rtkn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078770.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86435554 86441316 + MGP_C57BL6NJ_P0078770 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078771.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86435726 86440838 + MGP_C57BL6NJ_P0078771 Rtkn protein_coding protein_coding MGP_C57BL6NJ_T0078772.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86440997 86443402 + Rtkn protein_coding retained_intron MGP_C57BL6NJ_T0078774.1 MGP_C57BL6NJ_G0031362.1 mouse_genomes_project 6 86443916 86445370 + Rtkn protein_coding retained_intron MGP_C57BL6NJ_T0079321.1 MGP_C57BL6NJ_G0031464.1 mouse_genomes_project 6 93937701 93938589 + MGP_C57BL6NJ_P0079321 protein_coding protein_coding MGP_C57BL6NJ_T0005140.1 MGP_C57BL6NJ_G0004403.1 mouse_genomes_project 6 75113120 75121072 + Gm15401 antisense antisense MGP_C57BL6NJ_T0005141.1 MGP_C57BL6NJ_G0004403.1 mouse_genomes_project 6 75113669 75121955 + Gm15401 antisense antisense MGP_C57BL6NJ_T0005142.1 MGP_C57BL6NJ_G0004403.1 mouse_genomes_project 6 75120841 75122306 + Gm15401 antisense antisense MGP_C57BL6NJ_T0015858.1 MGP_C57BL6NJ_G0013903.1 mouse_genomes_project 6 76429855 76430041 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076949.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20049642 20354252 + MGP_C57BL6NJ_P0076949 Cped1 protein_coding protein_coding MGP_C57BL6NJ_T0076950.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20049670 20073398 + Cped1 protein_coding processed_transcript MGP_C57BL6NJ_T0076951.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20049670 20207750 + MGP_C57BL6NJ_P0076951 Cped1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076952.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20050322 20206777 + MGP_C57BL6NJ_P0076952 Cped1 protein_coding protein_coding MGP_C57BL6NJ_T0076953.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20050618 20140141 + Cped1 protein_coding processed_transcript MGP_C57BL6NJ_T0076954.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20081872 20337837 + MGP_C57BL6NJ_P0076954 Cped1 protein_coding protein_coding MGP_C57BL6NJ_T0076955.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20092636 20157539 + Cped1 protein_coding processed_transcript MGP_C57BL6NJ_T0076956.1 MGP_C57BL6NJ_G0030919.1 mouse_genomes_project 6 20213189 20235874 + Cped1 protein_coding retained_intron MGP_C57BL6NJ_T0079986.1 MGP_C57BL6NJ_G0031595.1 mouse_genomes_project 6 121475504 121505807 - MGP_C57BL6NJ_P0079986 Efcab12 protein_coding protein_coding MGP_C57BL6NJ_T0079987.1 MGP_C57BL6NJ_G0031595.1 mouse_genomes_project 6 121475671 121505807 - MGP_C57BL6NJ_P0079987 Efcab12 protein_coding protein_coding MGP_C57BL6NJ_T0079988.1 MGP_C57BL6NJ_G0031595.1 mouse_genomes_project 6 121475671 121505807 - MGP_C57BL6NJ_P0079988 Efcab12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002086.1 MGP_C57BL6NJ_G0001977.1 mouse_genomes_project 6 31839098 31842094 - TEC TEC MGP_C57BL6NJ_T0000219.1 MGP_C57BL6NJ_G0000163.1 mouse_genomes_project 6 70107605 70108350 + MGP_C57BL6NJ_P0000219 Igkv2-109 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000299.1 MGP_C57BL6NJ_G0000224.1 mouse_genomes_project 6 72978050 72978639 + MGP_C57BL6NJ_P0000299 Igkv3-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000272.1 MGP_C57BL6NJ_G0000203.1 mouse_genomes_project 6 72165712 72166280 - MGP_C57BL6NJ_P0000272 Igkv7-33 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000273.1 MGP_C57BL6NJ_G0000203.1 mouse_genomes_project 6 72165712 72166280 - MGP_C57BL6NJ_P0000273 Igkv7-33 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0076758.1 MGP_C57BL6NJ_G0030888.1 mouse_genomes_project 6 5607366 5700150 + MGP_C57BL6NJ_P0076758 Glcci1 protein_coding protein_coding MGP_C57BL6NJ_T0076759.1 MGP_C57BL6NJ_G0030888.1 mouse_genomes_project 6 5608706 5680982 + MGP_C57BL6NJ_P0076759 Glcci1 protein_coding protein_coding MGP_C57BL6NJ_T0076760.1 MGP_C57BL6NJ_G0030888.1 mouse_genomes_project 6 5617884 5696220 + MGP_C57BL6NJ_P0076760 Glcci1 protein_coding protein_coding MGP_C57BL6NJ_T0076761.1 MGP_C57BL6NJ_G0030888.1 mouse_genomes_project 6 5637846 5696670 + MGP_C57BL6NJ_P0076761 Glcci1 protein_coding protein_coding MGP_C57BL6NJ_T0076762.1 MGP_C57BL6NJ_G0030888.1 mouse_genomes_project 6 5681039 5694229 + Glcci1 protein_coding processed_transcript MGP_C57BL6NJ_T0078960.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89002607 89019569 + MGP_C57BL6NJ_P0078960 Cct7 protein_coding protein_coding MGP_C57BL6NJ_T0078961.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89003112 89006996 + Cct7 protein_coding retained_intron MGP_C57BL6NJ_T0078962.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89003145 89019376 + MGP_C57BL6NJ_P0078962 Cct7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078963.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89003185 89019376 + MGP_C57BL6NJ_P0078963 Cct7 protein_coding protein_coding MGP_C57BL6NJ_T0078964.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89011831 89016004 + Cct7 protein_coding retained_intron MGP_C57BL6NJ_T0078965.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89012864 89017031 + Cct7 protein_coding retained_intron MGP_C57BL6NJ_T0078966.1 MGP_C57BL6NJ_G0031394.1 mouse_genomes_project 6 89013245 89017182 + MGP_C57BL6NJ_P0078966 Cct7 protein_coding protein_coding MGP_C57BL6NJ_T0099274.1 MGP_C57BL6NJ_G0037338.1 mouse_genomes_project 6 53458793 53458932 - Gm26215 scaRNA scaRNA MGP_C57BL6NJ_T0100547.1 MGP_C57BL6NJ_G0038593.1 mouse_genomes_project 6 124722682 124722783 + Gm25905 snRNA snRNA MGP_C57BL6NJ_T0079470.1 MGP_C57BL6NJ_G0031499.1 mouse_genomes_project 6 96860024 97039511 - MGP_C57BL6NJ_P0079470 Adamts9 protein_coding protein_coding MGP_C57BL6NJ_T0079471.1 MGP_C57BL6NJ_G0031499.1 mouse_genomes_project 6 96881160 96952957 - Adamts9 protein_coding retained_intron MGP_C57BL6NJ_T0079474.1 MGP_C57BL6NJ_G0031499.1 mouse_genomes_project 6 96937456 96952967 - Adamts9 protein_coding retained_intron MGP_C57BL6NJ_T0079475.1 MGP_C57BL6NJ_G0031499.1 mouse_genomes_project 6 96943771 96947453 - Adamts9 protein_coding retained_intron MGP_C57BL6NJ_T0079477.1 MGP_C57BL6NJ_G0031499.1 mouse_genomes_project 6 97020927 97039848 - Adamts9 protein_coding processed_transcript MGP_C57BL6NJ_T0008812.1 MGP_C57BL6NJ_G0007124.1 mouse_genomes_project 6 74609966 74614825 + Gm45050 lincRNA lincRNA MGP_C57BL6NJ_T0015843.1 MGP_C57BL6NJ_G0013888.1 mouse_genomes_project 6 72637686 72639034 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079681.1 MGP_C57BL6NJ_G0031540.1 mouse_genomes_project 6 113850006 113856352 + MGP_C57BL6NJ_P0079681 Bhlhe40 protein_coding protein_coding MGP_C57BL6NJ_T0079682.1 MGP_C57BL6NJ_G0031540.1 mouse_genomes_project 6 113850176 113850712 + Bhlhe40 protein_coding retained_intron MGP_C57BL6NJ_T0079683.1 MGP_C57BL6NJ_G0031540.1 mouse_genomes_project 6 113850251 113852077 + MGP_C57BL6NJ_P0079683 Bhlhe40 protein_coding protein_coding MGP_C57BL6NJ_T0079684.1 MGP_C57BL6NJ_G0031540.1 mouse_genomes_project 6 113852472 113855092 + Bhlhe40 protein_coding retained_intron MGP_C57BL6NJ_T0080822.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135393556 135400919 - MGP_C57BL6NJ_P0080822 protein_coding protein_coding MGP_C57BL6NJ_T0080823.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135393916 135400975 - MGP_C57BL6NJ_P0080823 protein_coding protein_coding MGP_C57BL6NJ_T0080824.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135393921 135400975 - MGP_C57BL6NJ_P0080824 protein_coding protein_coding MGP_C57BL6NJ_T0080825.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135394527 135400686 - MGP_C57BL6NJ_P0080825 protein_coding protein_coding MGP_C57BL6NJ_T0080826.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135397338 135400802 - MGP_C57BL6NJ_P0080826 protein_coding protein_coding MGP_C57BL6NJ_T0080827.1 MGP_C57BL6NJ_G0031758.1 mouse_genomes_project 6 135399997 135401018 - protein_coding processed_transcript MGP_C57BL6NJ_T0011013.1 MGP_C57BL6NJ_G0009098.1 mouse_genomes_project 6 35757792 35757939 + Gm25111 miRNA miRNA MGP_C57BL6NJ_T0002273.1 MGP_C57BL6NJ_G0002163.1 mouse_genomes_project 6 126640332 126640804 - TEC TEC MGP_C57BL6NJ_T0101781.1 MGP_C57BL6NJ_G0039827.1 mouse_genomes_project 6 26131288 26131405 + Gm26310 snoRNA snoRNA MGP_C57BL6NJ_T0103249.1 MGP_C57BL6NJ_G0041043.1 mouse_genomes_project 6 58080880 58081769 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100537.1 MGP_C57BL6NJ_G0038583.1 mouse_genomes_project 6 100842583 100842687 - Gm26011 snRNA snRNA MGP_C57BL6NJ_T0103251.1 MGP_C57BL6NJ_G0041045.1 mouse_genomes_project 6 58714931 58715433 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005285.1 MGP_C57BL6NJ_G0004504.1 mouse_genomes_project 6 154049787 154052659 + Gm26666 antisense antisense MGP_C57BL6NJ_T0016062.1 MGP_C57BL6NJ_G0014107.1 mouse_genomes_project 6 140225625 140226058 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078082.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760563 53871450 + 9430076C15Rik protein_coding retained_intron MGP_C57BL6NJ_T0078083.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760563 54203692 + MGP_C57BL6NJ_P0078083 9430076C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0078084.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760579 53874704 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078085.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760588 53877242 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078086.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760611 53762001 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078087.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760611 54140435 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078088.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760611 53868866 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078089.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760611 54103540 + 9430076C15Rik protein_coding retained_intron MGP_C57BL6NJ_T0078090.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53760614 53894756 + 9430076C15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078091.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53763716 54196809 + MGP_C57BL6NJ_P0078091 9430076C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0078092.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 53785332 54196809 + MGP_C57BL6NJ_P0078092 9430076C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0078093.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 54064648 54203683 + MGP_C57BL6NJ_P0078093 9430076C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0078094.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 54064723 54105032 + 9430076C15Rik protein_coding retained_intron MGP_C57BL6NJ_T0078095.1 MGP_C57BL6NJ_G0031191.1 mouse_genomes_project 6 54064724 54101895 + MGP_C57BL6NJ_P0078095 9430076C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0016007.1 MGP_C57BL6NJ_G0014052.1 mouse_genomes_project 6 132515874 132516264 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081584.1 MGP_C57BL6NJ_G0031947.1 mouse_genomes_project 6 157374035 157599865 - MGP_C57BL6NJ_P0081584 Tmtc1 protein_coding protein_coding MGP_C57BL6NJ_T0081585.1 MGP_C57BL6NJ_G0031947.1 mouse_genomes_project 6 157374035 157599865 - MGP_C57BL6NJ_P0081585 Tmtc1 protein_coding protein_coding MGP_C57BL6NJ_T0081586.1 MGP_C57BL6NJ_G0031947.1 mouse_genomes_project 6 157391675 157597111 - MGP_C57BL6NJ_P0081586 Tmtc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081587.1 MGP_C57BL6NJ_G0031947.1 mouse_genomes_project 6 157563017 157597111 - MGP_C57BL6NJ_P0081587 Tmtc1 protein_coding protein_coding MGP_C57BL6NJ_T0011058.1 MGP_C57BL6NJ_G0009143.1 mouse_genomes_project 6 126021382 126021466 - Mir706 miRNA miRNA MGP_C57BL6NJ_T0005166.1 MGP_C57BL6NJ_G0004417.1 mouse_genomes_project 6 89584046 89638071 + Gm19265 antisense antisense MGP_C57BL6NJ_T0077585.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39743816 39817489 + MGP_C57BL6NJ_P0077585 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077586.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39743820 39819459 + MGP_C57BL6NJ_P0077586 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077587.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39743863 39788815 + protein_coding retained_intron MGP_C57BL6NJ_T0077588.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39743865 39745146 + protein_coding retained_intron MGP_C57BL6NJ_T0077589.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39743886 39769389 + protein_coding retained_intron MGP_C57BL6NJ_T0077590.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39749425 39768038 + protein_coding processed_transcript MGP_C57BL6NJ_T0077591.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39749425 39777453 + MGP_C57BL6NJ_P0077591 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077592.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39769933 39772930 + protein_coding retained_intron MGP_C57BL6NJ_T0077593.1 MGP_C57BL6NJ_G0031042.1 mouse_genomes_project 6 39795992 39815609 + protein_coding retained_intron MGP_C57BL6NJ_T0077255.1 MGP_C57BL6NJ_G0030979.1 mouse_genomes_project 6 29343914 29350060 + MGP_C57BL6NJ_P0077255 Cpa1 protein_coding protein_coding MGP_C57BL6NJ_T0077256.1 MGP_C57BL6NJ_G0030979.1 mouse_genomes_project 6 29345037 29346571 + Cpa1 protein_coding retained_intron MGP_C57BL6NJ_T0015638.1 MGP_C57BL6NJ_G0013683.1 mouse_genomes_project 6 4679308 4679945 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016098.1 MGP_C57BL6NJ_G0014143.1 mouse_genomes_project 6 157406091 157406494 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015736.1 MGP_C57BL6NJ_G0013781.1 mouse_genomes_project 6 47616520 47616710 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079149.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91544975 91567867 - MGP_C57BL6NJ_P0079149 Rab43 protein_coding protein_coding MGP_C57BL6NJ_T0079150.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91544975 91565842 - MGP_C57BL6NJ_P0079150 Rab43 protein_coding protein_coding MGP_C57BL6NJ_T0079152.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91544987 91546198 - Rab43 protein_coding processed_transcript MGP_C57BL6NJ_T0079153.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91547621 91565845 - Rab43 protein_coding processed_transcript MGP_C57BL6NJ_T0079154.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91548274 91568252 - Rab43 protein_coding processed_transcript MGP_C57BL6NJ_T0079156.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91548920 91568186 - Rab43 protein_coding processed_transcript MGP_C57BL6NJ_T0079157.1 MGP_C57BL6NJ_G0031434.1 mouse_genomes_project 6 91550091 91567867 - MGP_C57BL6NJ_P0079157 Rab43 protein_coding protein_coding MGP_C57BL6NJ_T0002067.1 MGP_C57BL6NJ_G0001958.1 mouse_genomes_project 6 15660558 15671885 + TEC TEC MGP_C57BL6NJ_T0079332.1 MGP_C57BL6NJ_G0031472.1 mouse_genomes_project 6 94252838 94257069 + MGP_C57BL6NJ_P0079332 BC048671 protein_coding protein_coding MGP_C57BL6NJ_T0079333.1 MGP_C57BL6NJ_G0031472.1 mouse_genomes_project 6 94253735 94257069 + MGP_C57BL6NJ_P0079333 BC048671 protein_coding protein_coding MGP_C57BL6NJ_T0078238.1 MGP_C57BL6NJ_G0031234.1 mouse_genomes_project 6 58162329 58163416 - MGP_C57BL6NJ_P0078238 Vmn1r18 protein_coding protein_coding MGP_C57BL6NJ_T0000255.1 MGP_C57BL6NJ_G0000190.1 mouse_genomes_project 6 71797490 71798011 - MGP_C57BL6NJ_P0000255 Igkv4-50 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0079148.1 MGP_C57BL6NJ_G0031433.1 mouse_genomes_project 6 91531354 91533051 + MGP_C57BL6NJ_P0079148 Gp9 protein_coding protein_coding MGP_C57BL6NJ_T0015994.1 MGP_C57BL6NJ_G0014039.1 mouse_genomes_project 6 128783999 128784293 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079158.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91570356 91598025 - MGP_C57BL6NJ_P0079158 Isy1 protein_coding protein_coding MGP_C57BL6NJ_T0079159.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91580468 91597965 - MGP_C57BL6NJ_P0079159 Isy1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079160.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91580538 91581515 - Isy1 protein_coding retained_intron MGP_C57BL6NJ_T0079161.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91581352 91597927 - MGP_C57BL6NJ_P0079161 Isy1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079162.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91584216 91597983 - Isy1 protein_coding retained_intron MGP_C57BL6NJ_T0079163.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91585989 91597940 - Isy1 protein_coding retained_intron MGP_C57BL6NJ_T0079164.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91586594 91597974 - MGP_C57BL6NJ_P0079164 Isy1 protein_coding protein_coding MGP_C57BL6NJ_T0079165.1 MGP_C57BL6NJ_G0031436.1 mouse_genomes_project 6 91592798 91597983 - Isy1 protein_coding retained_intron MGP_C57BL6NJ_T0101800.1 MGP_C57BL6NJ_G0039846.1 mouse_genomes_project 6 69479029 69479165 - Gm24911 snoRNA snoRNA MGP_C57BL6NJ_T0079859.1 MGP_C57BL6NJ_G0031572.1 mouse_genomes_project 6 119154870 119162545 + MGP_C57BL6NJ_P0079859 Vhl protein_coding protein_coding MGP_C57BL6NJ_T0079860.1 MGP_C57BL6NJ_G0031572.1 mouse_genomes_project 6 119155632 119160673 + Vhl protein_coding processed_transcript MGP_C57BL6NJ_T0079861.1 MGP_C57BL6NJ_G0031572.1 mouse_genomes_project 6 119155840 119160469 + Vhl protein_coding processed_transcript MGP_C57BL6NJ_T0079862.1 MGP_C57BL6NJ_G0031572.1 mouse_genomes_project 6 119160418 119162539 + MGP_C57BL6NJ_P0079862 Vhl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076999.1 MGP_C57BL6NJ_G0030931.1 mouse_genomes_project 6 22780930 22786640 - Ndufa5 protein_coding retained_intron MGP_C57BL6NJ_T0077000.1 MGP_C57BL6NJ_G0030931.1 mouse_genomes_project 6 22780930 22791344 - MGP_C57BL6NJ_P0077000 Ndufa5 protein_coding protein_coding MGP_C57BL6NJ_T0077001.1 MGP_C57BL6NJ_G0030931.1 mouse_genomes_project 6 22780930 22791787 - MGP_C57BL6NJ_P0077001 Ndufa5 protein_coding protein_coding MGP_C57BL6NJ_T0077002.1 MGP_C57BL6NJ_G0030931.1 mouse_genomes_project 6 22780931 22791300 - Ndufa5 protein_coding processed_transcript MGP_C57BL6NJ_T0079586.1 MGP_C57BL6NJ_G0031520.1 mouse_genomes_project 6 103742623 104195142 - MGP_C57BL6NJ_P0079586 Gm20696 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079589.1 MGP_C57BL6NJ_G0031520.1 mouse_genomes_project 6 103934715 103945307 - Gm20696 protein_coding retained_intron MGP_C57BL6NJ_T0079590.1 MGP_C57BL6NJ_G0031520.1 mouse_genomes_project 6 103934746 104155423 - Gm20696 protein_coding retained_intron MGP_C57BL6NJ_T0076641.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 844654 854728 - MGP_C57BL6NJ_P0076641 Bet1 protein_coding protein_coding MGP_C57BL6NJ_T0076642.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 845474 854675 - Bet1 protein_coding processed_transcript MGP_C57BL6NJ_T0076643.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 845628 847847 - Bet1 protein_coding retained_intron MGP_C57BL6NJ_T0076644.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 848073 854728 - Bet1 protein_coding retained_intron MGP_C57BL6NJ_T0076645.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 849250 854686 - Bet1 protein_coding processed_transcript MGP_C57BL6NJ_T0076646.1 MGP_C57BL6NJ_G0030863.1 mouse_genomes_project 6 849273 854686 - Bet1 protein_coding processed_transcript MGP_C57BL6NJ_T0002291.1 MGP_C57BL6NJ_G0002181.1 mouse_genomes_project 6 136184227 136184424 - TEC TEC MGP_C57BL6NJ_T0081378.1 MGP_C57BL6NJ_G0031914.1 mouse_genomes_project 6 151639503 151663268 - MGP_C57BL6NJ_P0081378 Sult6b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081379.1 MGP_C57BL6NJ_G0031914.1 mouse_genomes_project 6 151640080 151663232 - MGP_C57BL6NJ_P0081379 Sult6b2 protein_coding protein_coding MGP_C57BL6NJ_T0005253.1 MGP_C57BL6NJ_G0004477.1 mouse_genomes_project 6 134733443 134734783 + Gm42738 antisense antisense MGP_C57BL6NJ_T0015868.1 MGP_C57BL6NJ_G0013913.1 mouse_genomes_project 6 81434725 81435221 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081380.1 MGP_C57BL6NJ_G0031915.1 mouse_genomes_project 6 151683449 151828691 - MGP_C57BL6NJ_P0081380 St8sia1 protein_coding protein_coding MGP_C57BL6NJ_T0081381.1 MGP_C57BL6NJ_G0031915.1 mouse_genomes_project 6 151690136 151828380 - MGP_C57BL6NJ_P0081381 St8sia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081382.1 MGP_C57BL6NJ_G0031915.1 mouse_genomes_project 6 151690765 151747721 - St8sia1 protein_coding processed_transcript MGP_C57BL6NJ_T0080654.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131803052 131838375 + MGP_C57BL6NJ_P0080654 Chd4 protein_coding protein_coding MGP_C57BL6NJ_T0080655.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131803052 131838369 + MGP_C57BL6NJ_P0080655 Chd4 protein_coding protein_coding MGP_C57BL6NJ_T0080656.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131803233 131838375 + MGP_C57BL6NJ_P0080656 Chd4 protein_coding protein_coding MGP_C57BL6NJ_T0080657.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131803248 131804444 + Chd4 protein_coding retained_intron MGP_C57BL6NJ_T0080658.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131803641 131807593 + MGP_C57BL6NJ_P0080658 Chd4 protein_coding protein_coding MGP_C57BL6NJ_T0080659.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131820417 131821498 + Chd4 protein_coding retained_intron MGP_C57BL6NJ_T0080660.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131820445 131828822 + MGP_C57BL6NJ_P0080660 Chd4 protein_coding protein_coding MGP_C57BL6NJ_T0080661.1 MGP_C57BL6NJ_G0031719.1 mouse_genomes_project 6 131826646 131827745 + Chd4 protein_coding retained_intron MGP_C57BL6NJ_T0002132.1 MGP_C57BL6NJ_G0002023.1 mouse_genomes_project 6 57652289 57652961 - TEC TEC MGP_C57BL6NJ_T0079029.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90046647 90059008 - MGP_C57BL6NJ_P0079029 Pcyox1 protein_coding protein_coding MGP_C57BL6NJ_T0079030.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90049312 90058995 - MGP_C57BL6NJ_P0079030 Pcyox1 protein_coding protein_coding MGP_C57BL6NJ_T0079031.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90049630 90052985 - MGP_C57BL6NJ_P0079031 Pcyox1 protein_coding protein_coding MGP_C57BL6NJ_T0079032.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90052325 90058997 - MGP_C57BL6NJ_P0079032 Pcyox1 protein_coding protein_coding MGP_C57BL6NJ_T0079033.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90055089 90058480 - Pcyox1 protein_coding retained_intron MGP_C57BL6NJ_T0079034.1 MGP_C57BL6NJ_G0031410.1 mouse_genomes_project 6 90057636 90058973 - Pcyox1 protein_coding retained_intron MGP_C57BL6NJ_T0078831.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86845431 86870785 - MGP_C57BL6NJ_P0078831 Actg2 protein_coding protein_coding MGP_C57BL6NJ_T0078832.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86845438 86861816 - MGP_C57BL6NJ_P0078832 Actg2 protein_coding protein_coding MGP_C57BL6NJ_T0078833.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86852261 86860728 - Actg2 protein_coding processed_transcript MGP_C57BL6NJ_T0078834.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86852261 86870743 - MGP_C57BL6NJ_P0078834 Actg2 protein_coding protein_coding MGP_C57BL6NJ_T0078835.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86852402 86861317 - MGP_C57BL6NJ_P0078835 Actg2 protein_coding protein_coding MGP_C57BL6NJ_T0078836.1 MGP_C57BL6NJ_G0031372.1 mouse_genomes_project 6 86853175 86861636 - MGP_C57BL6NJ_P0078836 Actg2 protein_coding protein_coding MGP_C57BL6NJ_T0101821.1 MGP_C57BL6NJ_G0039867.1 mouse_genomes_project 6 121472750 121472890 - Snora7a snoRNA snoRNA MGP_C57BL6NJ_T0081638.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158551997 158569246 + MGP_C57BL6NJ_P0081638 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081639.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552011 158578186 + MGP_C57BL6NJ_P0081639 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081640.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552039 158571552 + MGP_C57BL6NJ_P0081640 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081641.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552057 158577486 + MGP_C57BL6NJ_P0081641 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081642.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552057 158577486 + MGP_C57BL6NJ_P0081642 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081643.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552156 158553039 + 2810474O19Rik protein_coding retained_intron MGP_C57BL6NJ_T0081644.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158552311 158568064 + MGP_C57BL6NJ_P0081644 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081645.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158553999 158556950 + 2810474O19Rik protein_coding retained_intron MGP_C57BL6NJ_T0081646.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158559916 158568542 + MGP_C57BL6NJ_P0081646 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081647.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158567230 158568348 + MGP_C57BL6NJ_P0081647 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081648.1 MGP_C57BL6NJ_G0031954.1 mouse_genomes_project 6 158568032 158578181 + MGP_C57BL6NJ_P0081648 2810474O19Rik protein_coding protein_coding MGP_C57BL6NJ_T0100510.1 MGP_C57BL6NJ_G0038556.1 mouse_genomes_project 6 24809569 24809709 - Gm24691 snRNA snRNA MGP_C57BL6NJ_T0015625.1 MGP_C57BL6NJ_G0013670.1 mouse_genomes_project 6 1136520 1137127 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008850.1 MGP_C57BL6NJ_G0007153.1 mouse_genomes_project 6 93145301 93146617 - Gm44204 lincRNA lincRNA MGP_C57BL6NJ_T0078860.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87176560 87184130 + MGP_C57BL6NJ_P0078860 Nagk protein_coding protein_coding MGP_C57BL6NJ_T0078861.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87176606 87184128 + MGP_C57BL6NJ_P0078861 Nagk protein_coding protein_coding MGP_C57BL6NJ_T0078862.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87176739 87180195 + Nagk protein_coding retained_intron MGP_C57BL6NJ_T0078863.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87176786 87183908 + Nagk protein_coding processed_transcript MGP_C57BL6NJ_T0078864.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87176813 87184994 + MGP_C57BL6NJ_P0078864 Nagk protein_coding protein_coding MGP_C57BL6NJ_T0078865.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87177820 87178572 + Nagk protein_coding retained_intron MGP_C57BL6NJ_T0078866.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87178605 87181849 + Nagk protein_coding retained_intron MGP_C57BL6NJ_T0078867.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87179523 87180939 + Nagk protein_coding retained_intron MGP_C57BL6NJ_T0078868.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87179556 87182706 + Nagk protein_coding processed_transcript MGP_C57BL6NJ_T0078869.1 MGP_C57BL6NJ_G0031380.1 mouse_genomes_project 6 87183721 87185592 + Nagk protein_coding retained_intron MGP_C57BL6NJ_T0015921.1 MGP_C57BL6NJ_G0013966.1 mouse_genomes_project 6 104801612 104860547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008687.1 MGP_C57BL6NJ_G0007035.1 mouse_genomes_project 6 8239100 8309172 + Gm44004 lincRNA lincRNA MGP_C57BL6NJ_T0079909.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216053 120436004 + MGP_C57BL6NJ_P0079909 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079910.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216068 120436002 + MGP_C57BL6NJ_P0079910 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079911.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216072 120264188 + Atg7 protein_coding retained_intron MGP_C57BL6NJ_T0079912.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216074 120257193 + MGP_C57BL6NJ_P0079912 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079913.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216078 120434518 + MGP_C57BL6NJ_P0079913 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079914.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216083 120434609 + MGP_C57BL6NJ_P0079914 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079915.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216083 120249785 + MGP_C57BL6NJ_P0079915 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079916.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216085 120434612 + MGP_C57BL6NJ_P0079916 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079917.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216085 120434618 + MGP_C57BL6NJ_P0079917 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079918.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120216087 120265494 + MGP_C57BL6NJ_P0079918 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079919.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120225513 120263792 + MGP_C57BL6NJ_P0079919 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079920.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120229103 120265477 + MGP_C57BL6NJ_P0079920 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079921.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120234729 120250372 + MGP_C57BL6NJ_P0079921 Atg7 protein_coding protein_coding MGP_C57BL6NJ_T0079922.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120259436 120281894 + Atg7 protein_coding processed_transcript MGP_C57BL6NJ_T0079923.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120262558 120264766 + Atg7 protein_coding retained_intron MGP_C57BL6NJ_T0079924.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120303273 120434612 + Atg7 protein_coding processed_transcript MGP_C57BL6NJ_T0079925.1 MGP_C57BL6NJ_G0031581.1 mouse_genomes_project 6 120431538 120434610 + Atg7 protein_coding processed_transcript MGP_C57BL6NJ_T0102532.1 MGP_C57BL6NJ_G0040382.1 mouse_genomes_project 6 136256275 136273079 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102533.1 MGP_C57BL6NJ_G0040382.1 mouse_genomes_project 6 136256275 136263935 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0015685.1 MGP_C57BL6NJ_G0013730.1 mouse_genomes_project 6 21325633 21327677 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079064.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90105587 90112978 + MGP_C57BL6NJ_P0079064 C87436 protein_coding protein_coding MGP_C57BL6NJ_T0079065.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90105861 90142184 + MGP_C57BL6NJ_P0079065 C87436 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079066.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90105890 90142187 + MGP_C57BL6NJ_P0079066 C87436 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079067.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90105906 90106687 + C87436 protein_coding processed_transcript MGP_C57BL6NJ_T0079068.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90105925 90142187 + MGP_C57BL6NJ_P0079068 C87436 protein_coding protein_coding MGP_C57BL6NJ_T0079069.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90111011 90145299 + MGP_C57BL6NJ_P0079069 C87436 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079070.1 MGP_C57BL6NJ_G0031413.1 mouse_genomes_project 6 90135838 90141746 + C87436 protein_coding processed_transcript MGP_C57BL6NJ_T0015846.1 MGP_C57BL6NJ_G0013891.1 mouse_genomes_project 6 72685111 72686452 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101791.1 MGP_C57BL6NJ_G0039837.1 mouse_genomes_project 6 53061913 53062035 - Gm24355 snoRNA snoRNA MGP_C57BL6NJ_T0008837.1 MGP_C57BL6NJ_G0007143.1 mouse_genomes_project 6 90189821 90192214 - Gm44386 lincRNA lincRNA MGP_C57BL6NJ_T0081561.1 MGP_C57BL6NJ_G0031944.1 mouse_genomes_project 6 156598609 156636413 + MGP_C57BL6NJ_P0081561 Ccdc91 protein_coding protein_coding MGP_C57BL6NJ_T0081562.1 MGP_C57BL6NJ_G0031944.1 mouse_genomes_project 6 156598652 156761422 + MGP_C57BL6NJ_P0081562 Ccdc91 protein_coding protein_coding MGP_C57BL6NJ_T0081563.1 MGP_C57BL6NJ_G0031944.1 mouse_genomes_project 6 156598772 156661127 + MGP_C57BL6NJ_P0081563 Ccdc91 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081564.1 MGP_C57BL6NJ_G0031944.1 mouse_genomes_project 6 156658426 156669861 + Ccdc91 protein_coding processed_transcript MGP_C57BL6NJ_T0080074.1 MGP_C57BL6NJ_G0031609.1 mouse_genomes_project 6 122290580 122291816 + MGP_C57BL6NJ_P0080074 protein_coding protein_coding MGP_C57BL6NJ_T0008766.1 MGP_C57BL6NJ_G0007087.1 mouse_genomes_project 6 50250407 50306461 + Gm3455 lincRNA lincRNA MGP_C57BL6NJ_T0103290.1 MGP_C57BL6NJ_G0041083.1 mouse_genomes_project 6 137059818 137076334 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101802.1 MGP_C57BL6NJ_G0039848.1 mouse_genomes_project 6 70069799 70069944 - Gm25436 snoRNA snoRNA MGP_C57BL6NJ_T0078971.1 MGP_C57BL6NJ_G0031397.1 mouse_genomes_project 6 89147915 89229446 + MGP_C57BL6NJ_P0078971 Alms1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078972.1 MGP_C57BL6NJ_G0031397.1 mouse_genomes_project 6 89147921 89399638 + MGP_C57BL6NJ_P0078972 Alms1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078973.1 MGP_C57BL6NJ_G0031397.1 mouse_genomes_project 6 89147955 89265894 + MGP_C57BL6NJ_P0078973 Alms1 protein_coding protein_coding MGP_C57BL6NJ_T0078974.1 MGP_C57BL6NJ_G0031397.1 mouse_genomes_project 6 89205104 89207833 + Alms1 protein_coding retained_intron MGP_C57BL6NJ_T0078975.1 MGP_C57BL6NJ_G0031397.1 mouse_genomes_project 6 89212371 89217239 + Alms1 protein_coding retained_intron MGP_C57BL6NJ_T0076748.1 MGP_C57BL6NJ_G0030885.1 mouse_genomes_project 6 5324211 5331210 - MGP_C57BL6NJ_P0076748 Rpa3 protein_coding protein_coding MGP_C57BL6NJ_T0011901.1 MGP_C57BL6NJ_G0009986.1 mouse_genomes_project 6 47707517 47707619 + Rny3 misc_RNA misc_RNA MGP_C57BL6NJ_T0015818.1 MGP_C57BL6NJ_G0013863.1 mouse_genomes_project 6 68284725 68284934 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100548.1 MGP_C57BL6NJ_G0038594.1 mouse_genomes_project 6 126145948 126146055 - Gm25327 snRNA snRNA MGP_C57BL6NJ_T0076972.1 MGP_C57BL6NJ_G0030923.1 mouse_genomes_project 6 21234358 21298868 - MGP_C57BL6NJ_P0076972 Aass protein_coding protein_coding MGP_C57BL6NJ_T0076973.1 MGP_C57BL6NJ_G0030923.1 mouse_genomes_project 6 21256395 21294193 - Aass protein_coding processed_transcript MGP_C57BL6NJ_T0076974.1 MGP_C57BL6NJ_G0030923.1 mouse_genomes_project 6 21256395 21294225 - MGP_C57BL6NJ_P0076974 Aass protein_coding protein_coding MGP_C57BL6NJ_T0076975.1 MGP_C57BL6NJ_G0030923.1 mouse_genomes_project 6 21274712 21298798 - Aass protein_coding processed_transcript MGP_C57BL6NJ_T0000446.1 MGP_C57BL6NJ_G0000365.1 mouse_genomes_project 6 71659948 71660379 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078625.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79710106 80889790 - MGP_C57BL6NJ_P0078625 Ctnna2 protein_coding protein_coding MGP_C57BL6NJ_T0078626.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79710106 80889790 - MGP_C57BL6NJ_P0078626 Ctnna2 protein_coding protein_coding MGP_C57BL6NJ_T0078627.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79710109 80889641 - MGP_C57BL6NJ_P0078627 Ctnna2 protein_coding protein_coding MGP_C57BL6NJ_T0078628.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79711019 80889651 - MGP_C57BL6NJ_P0078628 Ctnna2 protein_coding protein_coding MGP_C57BL6NJ_T0078629.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79711225 79731351 - Ctnna2 protein_coding retained_intron MGP_C57BL6NJ_T0078630.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 79746533 79991592 - MGP_C57BL6NJ_P0078630 Ctnna2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078635.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 80488071 80817822 - MGP_C57BL6NJ_P0078635 Ctnna2 protein_coding protein_coding MGP_C57BL6NJ_T0078636.1 MGP_C57BL6NJ_G0031328.1 mouse_genomes_project 6 80829837 80889676 - Ctnna2 protein_coding processed_transcript MGP_C57BL6NJ_T0079072.1 MGP_C57BL6NJ_G0031415.1 mouse_genomes_project 6 90315072 90316619 + MGP_C57BL6NJ_P0079072 Asprv1 protein_coding protein_coding MGP_C57BL6NJ_T0079716.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532014 118560639 + MGP_C57BL6NJ_P0079716 Thumpd3 protein_coding protein_coding MGP_C57BL6NJ_T0079717.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532091 118548329 + MGP_C57BL6NJ_P0079717 Thumpd3 protein_coding protein_coding MGP_C57BL6NJ_T0079718.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532104 118553163 + Thumpd3 protein_coding retained_intron MGP_C57BL6NJ_T0079719.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532116 118535332 + Thumpd3 protein_coding retained_intron MGP_C57BL6NJ_T0079720.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532146 118533808 + Thumpd3 protein_coding retained_intron MGP_C57BL6NJ_T0079721.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532247 118533468 + MGP_C57BL6NJ_P0079721 Thumpd3 protein_coding protein_coding MGP_C57BL6NJ_T0079722.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118532544 118533494 + MGP_C57BL6NJ_P0079722 Thumpd3 protein_coding protein_coding MGP_C57BL6NJ_T0079723.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118533204 118536827 + Thumpd3 protein_coding processed_transcript MGP_C57BL6NJ_T0079724.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118550311 118553387 + Thumpd3 protein_coding retained_intron MGP_C57BL6NJ_T0079725.1 MGP_C57BL6NJ_G0031550.1 mouse_genomes_project 6 118557791 118560262 + Thumpd3 protein_coding retained_intron MGP_C57BL6NJ_T0005188.1 MGP_C57BL6NJ_G0004428.1 mouse_genomes_project 6 92268527 92269353 + Gm44264 antisense antisense MGP_C57BL6NJ_T0002143.1 MGP_C57BL6NJ_G0002034.1 mouse_genomes_project 6 73839182 73841962 - TEC TEC MGP_C57BL6NJ_T0077003.1 MGP_C57BL6NJ_G0030932.1 mouse_genomes_project 6 22791917 22837809 + MGP_C57BL6NJ_P0077003 Asb15 protein_coding protein_coding MGP_C57BL6NJ_T0077004.1 MGP_C57BL6NJ_G0030932.1 mouse_genomes_project 6 22822513 22839980 + MGP_C57BL6NJ_P0077004 Asb15 protein_coding protein_coding MGP_C57BL6NJ_T0077609.1 MGP_C57BL6NJ_G0031047.1 mouse_genomes_project 6 39918831 39919844 + MGP_C57BL6NJ_P0077609 Tas2r108 protein_coding protein_coding MGP_C57BL6NJ_T0080674.1 MGP_C57BL6NJ_G0031722.1 mouse_genomes_project 6 131871283 131878122 - protein_coding retained_intron MGP_C57BL6NJ_T0080675.1 MGP_C57BL6NJ_G0031722.1 mouse_genomes_project 6 131876464 131878722 - protein_coding processed_transcript MGP_C57BL6NJ_T0080676.1 MGP_C57BL6NJ_G0031722.1 mouse_genomes_project 6 131877715 131878724 - protein_coding retained_intron MGP_C57BL6NJ_T0011015.1 MGP_C57BL6NJ_G0009100.1 mouse_genomes_project 6 47728718 47728795 - Mir704 miRNA miRNA MGP_C57BL6NJ_T0100535.1 MGP_C57BL6NJ_G0038581.1 mouse_genomes_project 6 99310302 99310409 - Gm26501 snRNA snRNA MGP_C57BL6NJ_T0077608.1 MGP_C57BL6NJ_G0031046.1 mouse_genomes_project 6 39916535 39917608 + MGP_C57BL6NJ_P0077608 Tas2r137 protein_coding protein_coding MGP_C57BL6NJ_T0100563.1 MGP_C57BL6NJ_G0038609.1 mouse_genomes_project 6 158284018 158284125 - Gm22578 snRNA snRNA MGP_C57BL6NJ_T0015861.1 MGP_C57BL6NJ_G0013906.1 mouse_genomes_project 6 78089564 78090533 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015656.1 MGP_C57BL6NJ_G0013701.1 mouse_genomes_project 6 11918728 11919299 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077351.1 MGP_C57BL6NJ_G0030996.1 mouse_genomes_project 6 33315007 33325910 + MGP_C57BL6NJ_P0077351 Akr1b7 protein_coding protein_coding MGP_C57BL6NJ_T0000419.1 MGP_C57BL6NJ_G0000338.1 mouse_genomes_project 6 70747208 70747393 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078251.1 MGP_C57BL6NJ_G0031240.1 mouse_genomes_project 6 58509317 58514790 - MGP_C57BL6NJ_P0078251 Pyurf protein_coding protein_coding MGP_C57BL6NJ_T0005190.1 MGP_C57BL6NJ_G0004430.1 mouse_genomes_project 6 92542299 92551738 - Gm26588 antisense antisense MGP_C57BL6NJ_T0005191.1 MGP_C57BL6NJ_G0004430.1 mouse_genomes_project 6 92545118 92550379 - Gm26588 antisense antisense MGP_C57BL6NJ_T0005079.1 MGP_C57BL6NJ_G0004354.1 mouse_genomes_project 6 27895330 27895733 - Gm17172 antisense antisense MGP_C57BL6NJ_T0081157.1 MGP_C57BL6NJ_G0031869.1 mouse_genomes_project 6 145146293 145148124 + MGP_C57BL6NJ_P0081157 H2afj protein_coding protein_coding MGP_C57BL6NJ_T0081158.1 MGP_C57BL6NJ_G0031869.1 mouse_genomes_project 6 145146382 145147843 + MGP_C57BL6NJ_P0081158 H2afj protein_coding protein_coding MGP_C57BL6NJ_T0002129.1 MGP_C57BL6NJ_G0002020.1 mouse_genomes_project 6 55272150 55272562 + TEC TEC MGP_C57BL6NJ_T0077814.1 MGP_C57BL6NJ_G0031126.1 mouse_genomes_project 6 47958114 47983316 - MGP_C57BL6NJ_P0077814 Zfp777 protein_coding protein_coding MGP_C57BL6NJ_T0077815.1 MGP_C57BL6NJ_G0031126.1 mouse_genomes_project 6 47958131 47985285 - MGP_C57BL6NJ_P0077815 Zfp777 protein_coding protein_coding MGP_C57BL6NJ_T0077816.1 MGP_C57BL6NJ_G0031126.1 mouse_genomes_project 6 47963305 47978170 - MGP_C57BL6NJ_P0077816 Zfp777 protein_coding protein_coding MGP_C57BL6NJ_T0077817.1 MGP_C57BL6NJ_G0031126.1 mouse_genomes_project 6 47978089 47983316 - MGP_C57BL6NJ_P0077817 Zfp777 protein_coding protein_coding MGP_C57BL6NJ_T0077818.1 MGP_C57BL6NJ_G0031126.1 mouse_genomes_project 6 47978371 47982996 - MGP_C57BL6NJ_P0077818 Zfp777 protein_coding protein_coding MGP_C57BL6NJ_T0076734.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4717873 4736025 - MGP_C57BL6NJ_P0076734 Asns protein_coding protein_coding MGP_C57BL6NJ_T0076735.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4717873 4735642 - MGP_C57BL6NJ_P0076735 Asns protein_coding protein_coding MGP_C57BL6NJ_T0076736.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4718174 4720090 - Asns protein_coding processed_transcript MGP_C57BL6NJ_T0076737.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4723981 4725126 - Asns protein_coding retained_intron MGP_C57BL6NJ_T0076738.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4725040 4735881 - MGP_C57BL6NJ_P0076738 Asns protein_coding protein_coding MGP_C57BL6NJ_T0076739.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4727967 4735000 - MGP_C57BL6NJ_P0076739 Asns protein_coding protein_coding MGP_C57BL6NJ_T0076740.1 MGP_C57BL6NJ_G0030881.1 mouse_genomes_project 6 4728059 4735643 - MGP_C57BL6NJ_P0076740 Asns protein_coding protein_coding MGP_C57BL6NJ_T0076907.1 MGP_C57BL6NJ_G0030910.1 mouse_genomes_project 6 15745193 15790579 - MGP_C57BL6NJ_P0076907 Wnt2 protein_coding protein_coding MGP_C57BL6NJ_T0002140.1 MGP_C57BL6NJ_G0002031.1 mouse_genomes_project 6 73446346 73447252 - TEC TEC MGP_C57BL6NJ_T0077499.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37792145 37847162 + MGP_C57BL6NJ_P0077499 Luc7l2 protein_coding protein_coding MGP_C57BL6NJ_T0077500.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37792276 37853603 + MGP_C57BL6NJ_P0077500 Luc7l2 protein_coding protein_coding MGP_C57BL6NJ_T0077501.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37792276 37848489 + MGP_C57BL6NJ_P0077501 Luc7l2 protein_coding protein_coding MGP_C57BL6NJ_T0077502.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793214 37853601 + MGP_C57BL6NJ_P0077502 Luc7l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077503.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793231 37799667 + Luc7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0077504.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793231 37799798 + Luc7l2 protein_coding retained_intron MGP_C57BL6NJ_T0077505.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793231 37795756 + Luc7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0077506.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793503 37853560 + MGP_C57BL6NJ_P0077506 Luc7l2 protein_coding protein_coding MGP_C57BL6NJ_T0077507.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37793543 37827395 + Luc7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0077508.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37797471 37831534 + MGP_C57BL6NJ_P0077508 Luc7l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077509.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37799389 37853070 + MGP_C57BL6NJ_P0077509 Luc7l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077510.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37800963 37811198 + Luc7l2 protein_coding retained_intron MGP_C57BL6NJ_T0077511.1 MGP_C57BL6NJ_G0031025.1 mouse_genomes_project 6 37811734 37848148 + Luc7l2 protein_coding retained_intron MGP_C57BL6NJ_T0078592.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75082890 75092841 + MGP_C57BL6NJ_P0078592 Retsat protein_coding protein_coding MGP_C57BL6NJ_T0078593.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75083043 75091797 + MGP_C57BL6NJ_P0078593 Retsat protein_coding protein_coding MGP_C57BL6NJ_T0078594.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75083043 75091797 + MGP_C57BL6NJ_P0078594 Retsat protein_coding protein_coding MGP_C57BL6NJ_T0078595.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75088788 75090805 + Retsat protein_coding processed_transcript MGP_C57BL6NJ_T0078596.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75090387 75091858 + MGP_C57BL6NJ_P0078596 Retsat protein_coding protein_coding MGP_C57BL6NJ_T0078597.1 MGP_C57BL6NJ_G0031320.1 mouse_genomes_project 6 75091060 75091627 + MGP_C57BL6NJ_P0078597 Retsat protein_coding protein_coding MGP_C57BL6NJ_T0080516.1 MGP_C57BL6NJ_G0031697.1 mouse_genomes_project 6 131432791 131434346 - Grcc10 protein_coding processed_transcript MGP_C57BL6NJ_T0080517.1 MGP_C57BL6NJ_G0031697.1 mouse_genomes_project 6 131432791 131435025 - MGP_C57BL6NJ_P0080517 Grcc10 protein_coding protein_coding MGP_C57BL6NJ_T0080518.1 MGP_C57BL6NJ_G0031697.1 mouse_genomes_project 6 131432794 131434716 - Grcc10 protein_coding retained_intron MGP_C57BL6NJ_T0080519.1 MGP_C57BL6NJ_G0031697.1 mouse_genomes_project 6 131432795 131434366 - Grcc10 protein_coding retained_intron MGP_C57BL6NJ_T0015783.1 MGP_C57BL6NJ_G0013828.1 mouse_genomes_project 6 62012992 62013517 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015903.1 MGP_C57BL6NJ_G0013948.1 mouse_genomes_project 6 97242634 97243621 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015933.1 MGP_C57BL6NJ_G0013978.1 mouse_genomes_project 6 109146796 109147248 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016040.1 MGP_C57BL6NJ_G0014085.1 mouse_genomes_project 6 138072332 138073357 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078535.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821008 74823408 - Rnf181 protein_coding retained_intron MGP_C57BL6NJ_T0078536.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821008 74823678 - MGP_C57BL6NJ_P0078536 Rnf181 protein_coding protein_coding MGP_C57BL6NJ_T0078537.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821008 74823717 - MGP_C57BL6NJ_P0078537 Rnf181 protein_coding protein_coding MGP_C57BL6NJ_T0078538.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821166 74823645 - MGP_C57BL6NJ_P0078538 Rnf181 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078539.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821378 74822681 - MGP_C57BL6NJ_P0078539 Rnf181 protein_coding protein_coding MGP_C57BL6NJ_T0078540.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821539 74828239 - MGP_C57BL6NJ_P0078540 Rnf181 protein_coding protein_coding MGP_C57BL6NJ_T0078541.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821545 74823629 - MGP_C57BL6NJ_P0078541 Rnf181 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078542.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821571 74823675 - MGP_C57BL6NJ_P0078542 Rnf181 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078543.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821572 74823648 - MGP_C57BL6NJ_P0078543 Rnf181 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078544.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821582 74823667 - MGP_C57BL6NJ_P0078544 Rnf181 protein_coding protein_coding MGP_C57BL6NJ_T0078545.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821630 74823650 - MGP_C57BL6NJ_P0078545 Rnf181 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078546.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821712 74822352 - Rnf181 protein_coding retained_intron MGP_C57BL6NJ_T0078547.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74821907 74823713 - Rnf181 protein_coding retained_intron MGP_C57BL6NJ_T0078548.1 MGP_C57BL6NJ_G0031312.1 mouse_genomes_project 6 74822307 74823280 - Rnf181 protein_coding retained_intron MGP_C57BL6NJ_T0005169.1 MGP_C57BL6NJ_G0004420.1 mouse_genomes_project 6 90142075 90152569 - A430078I02Rik antisense antisense MGP_C57BL6NJ_T0005170.1 MGP_C57BL6NJ_G0004420.1 mouse_genomes_project 6 90142603 90152629 - A430078I02Rik antisense antisense MGP_C57BL6NJ_T0005117.1 MGP_C57BL6NJ_G0004385.1 mouse_genomes_project 6 52548222 52570484 + Hoxaas3 antisense antisense MGP_C57BL6NJ_T0005118.1 MGP_C57BL6NJ_G0004385.1 mouse_genomes_project 6 52548240 52592568 + Hoxaas3 antisense antisense MGP_C57BL6NJ_T0005121.1 MGP_C57BL6NJ_G0004385.1 mouse_genomes_project 6 52578585 52591107 + Hoxaas3 antisense antisense MGP_C57BL6NJ_T0078373.1 MGP_C57BL6NJ_G0031274.1 mouse_genomes_project 6 68142883 68143919 - MGP_C57BL6NJ_P0078373 Vmn1r33 protein_coding protein_coding MGP_C57BL6NJ_T0100528.1 MGP_C57BL6NJ_G0038574.1 mouse_genomes_project 6 68591555 68591689 + Gm25260 snRNA snRNA MGP_C57BL6NJ_T0018713.1 MGP_C57BL6NJ_G0016019.1 mouse_genomes_project 6 48817035 48819305 - Gimap1os processed_transcript antisense MGP_C57BL6NJ_T0018714.1 MGP_C57BL6NJ_G0016019.1 mouse_genomes_project 6 48818184 48820128 - Gimap1os processed_transcript retained_intron MGP_C57BL6NJ_T0077479.1 MGP_C57BL6NJ_G0031021.1 mouse_genomes_project 6 37513328 37568174 - MGP_C57BL6NJ_P0077479 Zc3hav1 protein_coding protein_coding MGP_C57BL6NJ_T0077480.1 MGP_C57BL6NJ_G0031021.1 mouse_genomes_project 6 37518584 37568174 - MGP_C57BL6NJ_P0077480 Zc3hav1 protein_coding protein_coding MGP_C57BL6NJ_T0077481.1 MGP_C57BL6NJ_G0031021.1 mouse_genomes_project 6 37523712 37568504 - MGP_C57BL6NJ_P0077481 Zc3hav1 protein_coding protein_coding MGP_C57BL6NJ_T0077482.1 MGP_C57BL6NJ_G0031021.1 mouse_genomes_project 6 37523712 37568504 - MGP_C57BL6NJ_P0077482 Zc3hav1 protein_coding protein_coding MGP_C57BL6NJ_T0002725.1 MGP_C57BL6NJ_G0002603.1 mouse_genomes_project 6 41065245 41065293 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0100511.1 MGP_C57BL6NJ_G0038557.1 mouse_genomes_project 6 27671556 27671722 - Gm25589 snRNA snRNA MGP_C57BL6NJ_T0101840.1 MGP_C57BL6NJ_G0039886.1 mouse_genomes_project 6 143774738 143774853 + Gm25136 snoRNA snoRNA MGP_C57BL6NJ_T0000426.1 MGP_C57BL6NJ_G0000345.1 mouse_genomes_project 6 70963128 70963328 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079132.1 MGP_C57BL6NJ_G0031429.1 mouse_genomes_project 6 91192924 91231447 - Arhgap25 protein_coding retained_intron MGP_C57BL6NJ_T0079133.1 MGP_C57BL6NJ_G0031429.1 mouse_genomes_project 6 91192924 91268428 - MGP_C57BL6NJ_P0079133 Arhgap25 protein_coding protein_coding MGP_C57BL6NJ_T0079134.1 MGP_C57BL6NJ_G0031429.1 mouse_genomes_project 6 91193770 91231228 - MGP_C57BL6NJ_P0079134 Arhgap25 protein_coding protein_coding MGP_C57BL6NJ_T0079135.1 MGP_C57BL6NJ_G0031429.1 mouse_genomes_project 6 91194494 91199324 - Arhgap25 protein_coding retained_intron MGP_C57BL6NJ_T0015951.1 MGP_C57BL6NJ_G0013996.1 mouse_genomes_project 6 117858437 117858905 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102505.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878165 47889534 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102506.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878189 47883131 + transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102507.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878197 47883148 + transcribed_unprocessed_pseudogene retained_intron MGP_C57BL6NJ_T0102508.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878202 47888138 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102509.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878202 47881709 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102510.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47878244 47888559 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102511.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47880414 47883970 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102512.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47880482 47886319 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102513.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47880874 47890898 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102514.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47880887 47888560 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102515.1 MGP_C57BL6NJ_G0040372.1 mouse_genomes_project 6 47881655 47888559 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0000427.1 MGP_C57BL6NJ_G0000346.1 mouse_genomes_project 6 70973376 71041020 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015824.1 MGP_C57BL6NJ_G0013869.1 mouse_genomes_project 6 68988589 68989513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002085.1 MGP_C57BL6NJ_G0001976.1 mouse_genomes_project 6 30026660 30030716 + TEC TEC MGP_C57BL6NJ_T0015854.1 MGP_C57BL6NJ_G0013899.1 mouse_genomes_project 6 74520290 74520786 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100546.1 MGP_C57BL6NJ_G0038592.1 mouse_genomes_project 6 118553063 118553169 + Gm22591 snRNA snRNA MGP_C57BL6NJ_T0008863.1 MGP_C57BL6NJ_G0007163.1 mouse_genomes_project 6 102940679 103147182 - Gm44196 lincRNA lincRNA MGP_C57BL6NJ_T0008865.1 MGP_C57BL6NJ_G0007163.1 mouse_genomes_project 6 103113894 103147201 - Gm44196 lincRNA lincRNA MGP_C57BL6NJ_T0008866.1 MGP_C57BL6NJ_G0007163.1 mouse_genomes_project 6 103143154 103147231 - Gm44196 lincRNA lincRNA MGP_C57BL6NJ_T0005086.1 MGP_C57BL6NJ_G0004360.1 mouse_genomes_project 6 31246100 31249681 + Plxna4os2 antisense antisense MGP_C57BL6NJ_T0002151.1 MGP_C57BL6NJ_G0002042.1 mouse_genomes_project 6 75119735 75123144 - TEC TEC MGP_C57BL6NJ_T0000407.1 MGP_C57BL6NJ_G0000326.1 mouse_genomes_project 6 69981489 69981956 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000409.1 MGP_C57BL6NJ_G0000328.1 mouse_genomes_project 6 70107617 70108350 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0081066.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142772732 142861026 - MGP_C57BL6NJ_P0081066 Dusp16 protein_coding protein_coding MGP_C57BL6NJ_T0081067.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142772737 142861176 - MGP_C57BL6NJ_P0081067 Dusp16 protein_coding protein_coding MGP_C57BL6NJ_T0081068.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142775079 142822556 - MGP_C57BL6NJ_P0081068 Dusp16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081069.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142776034 142783313 - Dusp16 protein_coding retained_intron MGP_C57BL6NJ_T0081070.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142776186 142801967 - Dusp16 protein_coding processed_transcript MGP_C57BL6NJ_T0081071.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142777843 142820223 - MGP_C57BL6NJ_P0081071 Dusp16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081072.1 MGP_C57BL6NJ_G0031849.1 mouse_genomes_project 6 142794628 142859852 - MGP_C57BL6NJ_P0081072 Dusp16 protein_coding protein_coding MGP_C57BL6NJ_T0015956.1 MGP_C57BL6NJ_G0014001.1 mouse_genomes_project 6 118868651 118873745 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008889.1 MGP_C57BL6NJ_G0007184.1 mouse_genomes_project 6 122906628 122908664 + D030044L04Rik lincRNA lincRNA MGP_C57BL6NJ_T0016032.1 MGP_C57BL6NJ_G0014077.1 mouse_genomes_project 6 136104973 136106080 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100526.1 MGP_C57BL6NJ_G0038572.1 mouse_genomes_project 6 67338701 67338807 - Gm23543 snRNA snRNA MGP_C57BL6NJ_T0078856.1 MGP_C57BL6NJ_G0031379.1 mouse_genomes_project 6 87149315 87156265 - MGP_C57BL6NJ_P0078856 Tex261 protein_coding protein_coding MGP_C57BL6NJ_T0078857.1 MGP_C57BL6NJ_G0031379.1 mouse_genomes_project 6 87150842 87156242 - Tex261 protein_coding retained_intron MGP_C57BL6NJ_T0078858.1 MGP_C57BL6NJ_G0031379.1 mouse_genomes_project 6 87151613 87152902 - Tex261 protein_coding retained_intron MGP_C57BL6NJ_T0078859.1 MGP_C57BL6NJ_G0031379.1 mouse_genomes_project 6 87154033 87156210 - Tex261 protein_coding retained_intron MGP_C57BL6NJ_T0015631.1 MGP_C57BL6NJ_G0013676.1 mouse_genomes_project 6 3286177 3286402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000214.1 MGP_C57BL6NJ_G0000159.1 mouse_genomes_project 6 70047972 70048698 + MGP_C57BL6NJ_P0000214 Igkv2-112 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000215.1 MGP_C57BL6NJ_G0000159.1 mouse_genomes_project 6 70047972 70048698 + MGP_C57BL6NJ_P0000215 Igkv2-112 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015944.1 MGP_C57BL6NJ_G0013989.1 mouse_genomes_project 6 114440783 114441368 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000201.1 MGP_C57BL6NJ_G0000150.1 mouse_genomes_project 6 69427295 69428032 - MGP_C57BL6NJ_P0000201 Igkv1-131 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015881.1 MGP_C57BL6NJ_G0013926.1 mouse_genomes_project 6 88258314 88263552 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103242.1 MGP_C57BL6NJ_G0041036.1 mouse_genomes_project 6 42485721 42486035 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077658.1 MGP_C57BL6NJ_G0031073.1 mouse_genomes_project 6 41393438 41397969 + MGP_C57BL6NJ_P0077658 Pip protein_coding protein_coding MGP_C57BL6NJ_T0077659.1 MGP_C57BL6NJ_G0031073.1 mouse_genomes_project 6 41393471 41397861 + MGP_C57BL6NJ_P0077659 Pip protein_coding protein_coding MGP_C57BL6NJ_T0077660.1 MGP_C57BL6NJ_G0031073.1 mouse_genomes_project 6 41393488 41397488 + MGP_C57BL6NJ_P0077660 Pip protein_coding protein_coding MGP_C57BL6NJ_T0005122.1 MGP_C57BL6NJ_G0004387.1 mouse_genomes_project 6 52704850 52711336 - Evx1os antisense antisense MGP_C57BL6NJ_T0005123.1 MGP_C57BL6NJ_G0004387.1 mouse_genomes_project 6 52707297 52710009 - Evx1os antisense antisense MGP_C57BL6NJ_T0102308.1 MGP_C57BL6NJ_G0040275.1 mouse_genomes_project 6 157501057 157502000 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102309.1 MGP_C57BL6NJ_G0040275.1 mouse_genomes_project 6 157501111 157501900 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0079465.1 MGP_C57BL6NJ_G0031497.1 mouse_genomes_project 6 96293519 96296109 - MGP_C57BL6NJ_P0079465 Trh protein_coding protein_coding MGP_C57BL6NJ_T0081024.1 MGP_C57BL6NJ_G0031829.1 mouse_genomes_project 6 140584061 140585045 - MGP_C57BL6NJ_P0081024 Tas2r136 protein_coding protein_coding MGP_C57BL6NJ_T0079904.1 MGP_C57BL6NJ_G0031580.1 mouse_genomes_project 6 119970976 120056471 + MGP_C57BL6NJ_P0079904 Hrh1 protein_coding protein_coding MGP_C57BL6NJ_T0079905.1 MGP_C57BL6NJ_G0031580.1 mouse_genomes_project 6 119971126 120053041 + MGP_C57BL6NJ_P0079905 Hrh1 protein_coding protein_coding MGP_C57BL6NJ_T0079906.1 MGP_C57BL6NJ_G0031580.1 mouse_genomes_project 6 119976706 120055645 + MGP_C57BL6NJ_P0079906 Hrh1 protein_coding protein_coding MGP_C57BL6NJ_T0079907.1 MGP_C57BL6NJ_G0031580.1 mouse_genomes_project 6 119976865 120055579 + MGP_C57BL6NJ_P0079907 Hrh1 protein_coding protein_coding MGP_C57BL6NJ_T0079908.1 MGP_C57BL6NJ_G0031580.1 mouse_genomes_project 6 120031568 120055643 + MGP_C57BL6NJ_P0079908 Hrh1 protein_coding protein_coding MGP_C57BL6NJ_T0015940.1 MGP_C57BL6NJ_G0013985.1 mouse_genomes_project 6 113040193 113040665 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077850.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623075 48639211 + MGP_C57BL6NJ_P0077850 Lrrc61 protein_coding protein_coding MGP_C57BL6NJ_T0077851.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623078 48636881 + MGP_C57BL6NJ_P0077851 Lrrc61 protein_coding protein_coding MGP_C57BL6NJ_T0077852.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623078 48636861 + MGP_C57BL6NJ_P0077852 Lrrc61 protein_coding protein_coding MGP_C57BL6NJ_T0077853.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623084 48639210 + MGP_C57BL6NJ_P0077853 Lrrc61 protein_coding protein_coding MGP_C57BL6NJ_T0077854.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623090 48636756 + Lrrc61 protein_coding processed_transcript MGP_C57BL6NJ_T0077855.1 MGP_C57BL6NJ_G0031132.1 mouse_genomes_project 6 48623108 48637064 + MGP_C57BL6NJ_P0077855 Lrrc61 protein_coding protein_coding MGP_C57BL6NJ_T0079926.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120436017 120451159 - Vgll4 protein_coding processed_transcript MGP_C57BL6NJ_T0079927.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120436813 120500631 - MGP_C57BL6NJ_P0079927 Vgll4 protein_coding protein_coding MGP_C57BL6NJ_T0079928.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120437580 120451072 - Vgll4 protein_coding processed_transcript MGP_C57BL6NJ_T0079929.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120437580 120440147 - Vgll4 protein_coding processed_transcript MGP_C57BL6NJ_T0079930.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120437710 120549850 - MGP_C57BL6NJ_P0079930 Vgll4 protein_coding protein_coding MGP_C57BL6NJ_T0079931.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120438153 120550664 - MGP_C57BL6NJ_P0079931 Vgll4 protein_coding protein_coding MGP_C57BL6NJ_T0079932.1 MGP_C57BL6NJ_G0031582.1 mouse_genomes_project 6 120498863 120500626 - Vgll4 protein_coding retained_intron MGP_C57BL6NJ_T0101832.1 MGP_C57BL6NJ_G0039878.1 mouse_genomes_project 6 130653033 130653152 + Gm22916 snoRNA snoRNA MGP_C57BL6NJ_T0081500.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155649995 155665745 + MGP_C57BL6NJ_P0081500 Fgfr1op2 protein_coding protein_coding MGP_C57BL6NJ_T0081501.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155650690 155670360 + MGP_C57BL6NJ_P0081501 Fgfr1op2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0081502.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155650713 155665745 + MGP_C57BL6NJ_P0081502 Fgfr1op2 protein_coding protein_coding MGP_C57BL6NJ_T0081503.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155650732 155662895 + Fgfr1op2 protein_coding processed_transcript MGP_C57BL6NJ_T0081504.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155650734 155660188 + Fgfr1op2 protein_coding retained_intron MGP_C57BL6NJ_T0081505.1 MGP_C57BL6NJ_G0031931.1 mouse_genomes_project 6 155661200 155670259 + Fgfr1op2 protein_coding processed_transcript MGP_C57BL6NJ_T0015689.1 MGP_C57BL6NJ_G0013734.1 mouse_genomes_project 6 23103291 23104121 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015851.1 MGP_C57BL6NJ_G0013896.1 mouse_genomes_project 6 74280492 74281286 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011047.1 MGP_C57BL6NJ_G0009132.1 mouse_genomes_project 6 112567944 112568070 - Gm27690 miRNA miRNA MGP_C57BL6NJ_T0008872.1 MGP_C57BL6NJ_G0007169.1 mouse_genomes_project 6 105148388 105156225 + 1700049E22Rik lincRNA lincRNA MGP_C57BL6NJ_T0005066.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14746752 14861119 - Gm4876 antisense antisense MGP_C57BL6NJ_T0005067.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14758002 14861463 - Gm4876 antisense antisense MGP_C57BL6NJ_T0005068.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14778807 14861095 - Gm4876 antisense antisense MGP_C57BL6NJ_T0005069.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14794246 14861247 - Gm4876 antisense antisense MGP_C57BL6NJ_T0005070.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14850871 14861376 - Gm4876 antisense antisense MGP_C57BL6NJ_T0005071.1 MGP_C57BL6NJ_G0004347.1 mouse_genomes_project 6 14861018 14861440 - Gm4876 antisense antisense MGP_C57BL6NJ_T0081112.1 MGP_C57BL6NJ_G0031858.1 mouse_genomes_project 6 143333139 143387768 + MGP_C57BL6NJ_P0081112 Fam234b protein_coding protein_coding MGP_C57BL6NJ_T0081113.1 MGP_C57BL6NJ_G0031858.1 mouse_genomes_project 6 143333139 143378029 + MGP_C57BL6NJ_P0081113 Fam234b protein_coding protein_coding MGP_C57BL6NJ_T0081114.1 MGP_C57BL6NJ_G0031858.1 mouse_genomes_project 6 143333271 143350902 + MGP_C57BL6NJ_P0081114 Fam234b protein_coding protein_coding MGP_C57BL6NJ_T0081115.1 MGP_C57BL6NJ_G0031858.1 mouse_genomes_project 6 143333574 143350931 + MGP_C57BL6NJ_P0081115 Fam234b protein_coding protein_coding MGP_C57BL6NJ_T0081116.1 MGP_C57BL6NJ_G0031858.1 mouse_genomes_project 6 143373387 143378025 + Fam234b protein_coding retained_intron MGP_C57BL6NJ_T0081061.1 MGP_C57BL6NJ_G0031848.1 mouse_genomes_project 6 142693192 142767634 + MGP_C57BL6NJ_P0081061 Borcs5 protein_coding protein_coding MGP_C57BL6NJ_T0081062.1 MGP_C57BL6NJ_G0031848.1 mouse_genomes_project 6 142694622 142768466 + MGP_C57BL6NJ_P0081062 Borcs5 protein_coding protein_coding MGP_C57BL6NJ_T0081063.1 MGP_C57BL6NJ_G0031848.1 mouse_genomes_project 6 142694643 142698397 + Borcs5 protein_coding retained_intron MGP_C57BL6NJ_T0081064.1 MGP_C57BL6NJ_G0031848.1 mouse_genomes_project 6 142694937 142743266 + Borcs5 protein_coding retained_intron MGP_C57BL6NJ_T0081065.1 MGP_C57BL6NJ_G0031848.1 mouse_genomes_project 6 142757431 142767734 + Borcs5 protein_coding processed_transcript MGP_C57BL6NJ_T0008916.1 MGP_C57BL6NJ_G0007209.1 mouse_genomes_project 6 135647266 135649666 - Gm44009 lincRNA lincRNA MGP_C57BL6NJ_T0008803.1 MGP_C57BL6NJ_G0007115.1 mouse_genomes_project 6 71333866 71334104 - Rprl1 lincRNA lincRNA MGP_C57BL6NJ_T0079220.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92328327 92345990 - MGP_C57BL6NJ_P0079220 Sec61a1 protein_coding protein_coding MGP_C57BL6NJ_T0079221.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92329549 92331120 - Sec61a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079222.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92330921 92339502 - Sec61a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079223.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92331077 92340986 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079224.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92333427 92339820 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079225.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92339135 92339892 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079226.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92340895 92345858 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079227.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92341291 92343065 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079228.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92342410 92345913 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079229.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92342448 92345876 - Sec61a1 protein_coding processed_transcript MGP_C57BL6NJ_T0079230.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92342468 92345988 - Sec61a1 protein_coding retained_intron MGP_C57BL6NJ_T0079231.1 MGP_C57BL6NJ_G0031447.1 mouse_genomes_project 6 92345262 92345878 - Sec61a1 protein_coding processed_transcript MGP_C57BL6NJ_T0011036.1 MGP_C57BL6NJ_G0009121.1 mouse_genomes_project 6 89382770 89382865 - Gm27317 miRNA miRNA MGP_C57BL6NJ_T0002329.1 MGP_C57BL6NJ_G0002219.1 mouse_genomes_project 6 158025292 158026953 + TEC TEC MGP_C57BL6NJ_T0080983.1 MGP_C57BL6NJ_G0031806.1 mouse_genomes_project 6 137782719 137807048 - MGP_C57BL6NJ_P0080983 Klra1 protein_coding protein_coding MGP_C57BL6NJ_T0080984.1 MGP_C57BL6NJ_G0031806.1 mouse_genomes_project 6 137783022 137795641 - Klra1 protein_coding retained_intron MGP_C57BL6NJ_T0080707.1 MGP_C57BL6NJ_G0031729.1 mouse_genomes_project 6 132034293 132054441 - MGP_C57BL6NJ_P0080707 Ltbr protein_coding protein_coding MGP_C57BL6NJ_T0080708.1 MGP_C57BL6NJ_G0031729.1 mouse_genomes_project 6 132039343 132039797 - Ltbr protein_coding retained_intron MGP_C57BL6NJ_T0080709.1 MGP_C57BL6NJ_G0031729.1 mouse_genomes_project 6 132053488 132054021 - Ltbr protein_coding retained_intron MGP_C57BL6NJ_T0103271.1 MGP_C57BL6NJ_G0041065.1 mouse_genomes_project 6 90008615 90009749 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005180.1 MGP_C57BL6NJ_G0004423.1 mouse_genomes_project 6 91397577 91406198 + Gm44097 antisense antisense MGP_C57BL6NJ_T0079558.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103381242 103752693 - MGP_C57BL6NJ_P0079558 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079559.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103381246 103935310 - MGP_C57BL6NJ_P0079559 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079560.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103381256 103627953 - MGP_C57BL6NJ_P0079560 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079561.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103381319 103385690 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079562.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385093 104025910 - MGP_C57BL6NJ_P0079562 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079563.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079563 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079564.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079564 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079565.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079565 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079566.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103935310 - MGP_C57BL6NJ_P0079566 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079567.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103935310 - MGP_C57BL6NJ_P0079567 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079568.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079568 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079569.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103487326 - MGP_C57BL6NJ_P0079569 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079570.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079570 Foxp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079571.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103385994 103627953 - MGP_C57BL6NJ_P0079571 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079572.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103386075 103391450 - Foxp1 protein_coding retained_intron MGP_C57BL6NJ_T0079573.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103401434 103487380 - MGP_C57BL6NJ_P0079573 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079574.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103408101 103459568 - Foxp1 protein_coding retained_intron MGP_C57BL6NJ_T0079575.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103459087 103488009 - MGP_C57BL6NJ_P0079575 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079576.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103459280 103502943 - MGP_C57BL6NJ_P0079576 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079577.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103462572 103487333 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079578.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103465820 103560160 - MGP_C57BL6NJ_P0079578 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079579.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103465831 103502926 - MGP_C57BL6NJ_P0079579 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079580.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103472433 103487058 - MGP_C57BL6NJ_P0079580 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079581.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103538143 103733476 - MGP_C57BL6NJ_P0079581 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079582.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103616992 103752693 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079583.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103626874 103752710 - Foxp1 protein_coding retained_intron MGP_C57BL6NJ_T0079584.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103626874 103752710 - Foxp1 protein_coding retained_intron MGP_C57BL6NJ_T0079585.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103627863 104026075 - MGP_C57BL6NJ_P0079585 Foxp1 protein_coding protein_coding MGP_C57BL6NJ_T0079587.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103745496 104027560 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079588.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103797569 103936160 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0079591.1 MGP_C57BL6NJ_G0031519.1 mouse_genomes_project 6 103935200 104027634 - Foxp1 protein_coding processed_transcript MGP_C57BL6NJ_T0078155.1 MGP_C57BL6NJ_G0031204.1 mouse_genomes_project 6 55645248 55691915 + MGP_C57BL6NJ_P0078155 Gars protein_coding protein_coding MGP_C57BL6NJ_T0078156.1 MGP_C57BL6NJ_G0031204.1 mouse_genomes_project 6 55655304 55659291 + Gars protein_coding retained_intron MGP_C57BL6NJ_T0078157.1 MGP_C57BL6NJ_G0031204.1 mouse_genomes_project 6 55658419 55672625 + Gars protein_coding retained_intron MGP_C57BL6NJ_T0002205.1 MGP_C57BL6NJ_G0002096.1 mouse_genomes_project 6 91756233 91757277 - TEC TEC MGP_C57BL6NJ_T0077618.1 MGP_C57BL6NJ_G0031052.1 mouse_genomes_project 6 40038413 40039409 - MGP_C57BL6NJ_P0077618 Tas2r138 protein_coding protein_coding MGP_C57BL6NJ_T0011027.1 MGP_C57BL6NJ_G0009112.1 mouse_genomes_project 6 73634199 73634330 + Mir8112 miRNA miRNA MGP_C57BL6NJ_T0008968.1 MGP_C57BL6NJ_G0007242.1 mouse_genomes_project 6 157830160 157855056 - 4930528G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0099131.1 MGP_C57BL6NJ_G0037195.1 mouse_genomes_project 6 29030714 29030810 - Gm25625 rRNA rRNA MGP_C57BL6NJ_T0008724.1 MGP_C57BL6NJ_G0007060.1 mouse_genomes_project 6 30114150 30125848 + Gm13844 lincRNA lincRNA MGP_C57BL6NJ_T0078240.1 MGP_C57BL6NJ_G0031236.1 mouse_genomes_project 6 58207015 58208828 + MGP_C57BL6NJ_P0078240 protein_coding protein_coding MGP_C57BL6NJ_T0079951.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 120977639 121121081 + MGP_C57BL6NJ_P0079951 Pparg protein_coding protein_coding MGP_C57BL6NJ_T0079952.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 120978980 121121076 + MGP_C57BL6NJ_P0079952 Pparg protein_coding protein_coding MGP_C57BL6NJ_T0079953.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 120979037 121071395 + MGP_C57BL6NJ_P0079953 Pparg protein_coding protein_coding MGP_C57BL6NJ_T0079954.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 120979038 121000469 + Pparg protein_coding retained_intron MGP_C57BL6NJ_T0079955.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 121000344 121094115 + MGP_C57BL6NJ_P0079955 Pparg protein_coding protein_coding MGP_C57BL6NJ_T0079956.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 121042505 121121081 + MGP_C57BL6NJ_P0079956 Pparg protein_coding protein_coding MGP_C57BL6NJ_T0079957.1 MGP_C57BL6NJ_G0031587.1 mouse_genomes_project 6 121069813 121094491 + Pparg protein_coding retained_intron MGP_C57BL6NJ_T0015902.1 MGP_C57BL6NJ_G0013947.1 mouse_genomes_project 6 96629108 96630105 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080886.1 MGP_C57BL6NJ_G0031772.1 mouse_genomes_project 6 135935972 135950338 - MGP_C57BL6NJ_P0080886 Klrb1b protein_coding protein_coding MGP_C57BL6NJ_T0080887.1 MGP_C57BL6NJ_G0031772.1 mouse_genomes_project 6 135936650 135950320 - MGP_C57BL6NJ_P0080887 Klrb1b protein_coding protein_coding MGP_C57BL6NJ_T0080888.1 MGP_C57BL6NJ_G0031772.1 mouse_genomes_project 6 135937170 135950297 - MGP_C57BL6NJ_P0080888 Klrb1b protein_coding protein_coding MGP_C57BL6NJ_T0080889.1 MGP_C57BL6NJ_G0031772.1 mouse_genomes_project 6 135941506 135950312 - MGP_C57BL6NJ_P0080889 Klrb1b protein_coding protein_coding MGP_C57BL6NJ_T0002097.1 MGP_C57BL6NJ_G0001988.1 mouse_genomes_project 6 42909359 42909987 + TEC TEC MGP_C57BL6NJ_T0015764.1 MGP_C57BL6NJ_G0013809.1 mouse_genomes_project 6 52759399 52759680 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081478.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155157407 155570590 - MGP_C57BL6NJ_P0081478 Itpr2 protein_coding protein_coding MGP_C57BL6NJ_T0081479.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155160588 155570324 - MGP_C57BL6NJ_P0081479 Itpr2 protein_coding protein_coding MGP_C57BL6NJ_T0081480.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155169782 155196396 - Itpr2 protein_coding processed_transcript MGP_C57BL6NJ_T0081481.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155230369 155278580 - MGP_C57BL6NJ_P0081481 Itpr2 protein_coding protein_coding MGP_C57BL6NJ_T0081482.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155230444 155247123 - Itpr2 protein_coding processed_transcript MGP_C57BL6NJ_T0081483.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155283335 155284839 - Itpr2 protein_coding retained_intron MGP_C57BL6NJ_T0081484.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155343105 155346904 - Itpr2 protein_coding retained_intron MGP_C57BL6NJ_T0081485.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155412258 155457020 - MGP_C57BL6NJ_P0081485 Itpr2 protein_coding protein_coding MGP_C57BL6NJ_T0081486.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155429257 155570635 - MGP_C57BL6NJ_P0081486 Itpr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081487.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155438776 155570590 - Itpr2 protein_coding retained_intron MGP_C57BL6NJ_T0081488.1 MGP_C57BL6NJ_G0031929.1 mouse_genomes_project 6 155485784 155570290 - Itpr2 protein_coding processed_transcript MGP_C57BL6NJ_T0002331.1 MGP_C57BL6NJ_G0002221.1 mouse_genomes_project 6 158282626 158285350 - TEC TEC MGP_C57BL6NJ_T0080802.1 MGP_C57BL6NJ_G0031752.1 mouse_genomes_project 6 134866602 134937356 + MGP_C57BL6NJ_P0080802 Tspan11 protein_coding protein_coding MGP_C57BL6NJ_T0080803.1 MGP_C57BL6NJ_G0031752.1 mouse_genomes_project 6 134866785 134902889 + Tspan11 protein_coding retained_intron MGP_C57BL6NJ_T0099139.1 MGP_C57BL6NJ_G0037203.1 mouse_genomes_project 6 140329853 140329974 + n-R5s166 rRNA rRNA MGP_C57BL6NJ_T0080858.1 MGP_C57BL6NJ_G0031765.1 mouse_genomes_project 6 135533685 135584033 - MGP_C57BL6NJ_P0080858 Pzp protein_coding protein_coding MGP_C57BL6NJ_T0080859.1 MGP_C57BL6NJ_G0031765.1 mouse_genomes_project 6 135535392 135537684 - Pzp protein_coding processed_transcript MGP_C57BL6NJ_T0080860.1 MGP_C57BL6NJ_G0031765.1 mouse_genomes_project 6 135544934 135546810 - Pzp protein_coding retained_intron MGP_C57BL6NJ_T0080861.1 MGP_C57BL6NJ_G0031765.1 mouse_genomes_project 6 135574971 135584016 - MGP_C57BL6NJ_P0080861 Pzp protein_coding protein_coding MGP_C57BL6NJ_T0002298.1 MGP_C57BL6NJ_G0002188.1 mouse_genomes_project 6 142088231 142091095 + TEC TEC MGP_C57BL6NJ_T0099507.1 MGP_C57BL6NJ_G0037560.1 mouse_genomes_project 6 145804484 145804785 + Gm44258 sense_intronic sense_intronic MGP_C57BL6NJ_T0077111.1 MGP_C57BL6NJ_G0030958.1 mouse_genomes_project 6 27951518 27955361 - MGP_C57BL6NJ_P0077111 Opn1sw protein_coding protein_coding MGP_C57BL6NJ_T0077112.1 MGP_C57BL6NJ_G0030958.1 mouse_genomes_project 6 27952231 27955279 - MGP_C57BL6NJ_P0077112 Opn1sw protein_coding protein_coding MGP_C57BL6NJ_T0077113.1 MGP_C57BL6NJ_G0030958.1 mouse_genomes_project 6 27953778 27955261 - Opn1sw protein_coding processed_transcript MGP_C57BL6NJ_T0077114.1 MGP_C57BL6NJ_G0030958.1 mouse_genomes_project 6 27954220 27965557 - MGP_C57BL6NJ_P0077114 Opn1sw protein_coding protein_coding MGP_C57BL6NJ_T0080965.1 MGP_C57BL6NJ_G0031795.1 mouse_genomes_project 6 136917266 136947925 - MGP_C57BL6NJ_P0080965 Klri1 protein_coding protein_coding MGP_C57BL6NJ_T0015622.1 MGP_C57BL6NJ_G0013667.1 mouse_genomes_project 6 614756 615144 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079788.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118888380 118899244 - MGP_C57BL6NJ_P0079788 Tada3 protein_coding protein_coding MGP_C57BL6NJ_T0079789.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118888393 118899288 - MGP_C57BL6NJ_P0079789 Tada3 protein_coding protein_coding MGP_C57BL6NJ_T0079790.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118888641 118892869 - Tada3 protein_coding retained_intron MGP_C57BL6NJ_T0079791.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118896112 118899466 - Tada3 protein_coding retained_intron MGP_C57BL6NJ_T0079792.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118896209 118899466 - Tada3 protein_coding retained_intron MGP_C57BL6NJ_T0079793.1 MGP_C57BL6NJ_G0031558.1 mouse_genomes_project 6 118897730 118899483 - MGP_C57BL6NJ_P0079793 Tada3 protein_coding protein_coding MGP_C57BL6NJ_T0008757.1 MGP_C57BL6NJ_G0007079.1 mouse_genomes_project 6 40522576 40529796 + 5830405F06Rik lincRNA lincRNA MGP_C57BL6NJ_T0008758.1 MGP_C57BL6NJ_G0007079.1 mouse_genomes_project 6 40522577 40527838 + 5830405F06Rik lincRNA lincRNA MGP_C57BL6NJ_T0079818.1 MGP_C57BL6NJ_G0031563.1 mouse_genomes_project 6 118965853 118971523 + MGP_C57BL6NJ_P0079818 Jagn1 protein_coding protein_coding MGP_C57BL6NJ_T0079819.1 MGP_C57BL6NJ_G0031563.1 mouse_genomes_project 6 118965879 118968293 + Jagn1 protein_coding retained_intron MGP_C57BL6NJ_T0079820.1 MGP_C57BL6NJ_G0031563.1 mouse_genomes_project 6 118965894 118971503 + MGP_C57BL6NJ_P0079820 Jagn1 protein_coding protein_coding MGP_C57BL6NJ_T0080916.1 MGP_C57BL6NJ_G0031780.1 mouse_genomes_project 6 136479258 136488875 - MGP_C57BL6NJ_P0080916 4922502D21Rik protein_coding protein_coding MGP_C57BL6NJ_T0080917.1 MGP_C57BL6NJ_G0031780.1 mouse_genomes_project 6 136479941 136483791 - MGP_C57BL6NJ_P0080917 4922502D21Rik protein_coding protein_coding MGP_C57BL6NJ_T0005197.1 MGP_C57BL6NJ_G0004436.1 mouse_genomes_project 6 96057910 96061634 - 4930466I24Rik antisense antisense MGP_C57BL6NJ_T0015674.1 MGP_C57BL6NJ_G0013719.1 mouse_genomes_project 6 19524139 19524359 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015757.1 MGP_C57BL6NJ_G0013802.1 mouse_genomes_project 6 50834528 50834900 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000248.1 MGP_C57BL6NJ_G0000185.1 mouse_genomes_project 6 71397093 71397606 - MGP_C57BL6NJ_P0000248 Igkv4-57 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0078184.1 MGP_C57BL6NJ_G0031212.1 mouse_genomes_project 6 56498813 56649007 + MGP_C57BL6NJ_P0078184 Ccdc129 protein_coding protein_coding MGP_C57BL6NJ_T0078185.1 MGP_C57BL6NJ_G0031212.1 mouse_genomes_project 6 56552072 56649120 + Ccdc129 protein_coding processed_transcript MGP_C57BL6NJ_T0077213.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29051751 29076134 - MGP_C57BL6NJ_P0077213 Zc3hc1 protein_coding protein_coding MGP_C57BL6NJ_T0077214.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29051755 29076113 - MGP_C57BL6NJ_P0077214 Zc3hc1 protein_coding protein_coding MGP_C57BL6NJ_T0077215.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29051759 29052590 - Zc3hc1 protein_coding retained_intron MGP_C57BL6NJ_T0077216.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29051759 29076139 - MGP_C57BL6NJ_P0077216 Zc3hc1 protein_coding protein_coding MGP_C57BL6NJ_T0077217.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29051845 29076121 - MGP_C57BL6NJ_P0077217 Zc3hc1 protein_coding protein_coding MGP_C57BL6NJ_T0077218.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29055639 29058352 - Zc3hc1 protein_coding retained_intron MGP_C57BL6NJ_T0077219.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29058293 29076117 - MGP_C57BL6NJ_P0077219 Zc3hc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077220.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29060194 29068038 - Zc3hc1 protein_coding processed_transcript MGP_C57BL6NJ_T0077221.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29061374 29076100 - MGP_C57BL6NJ_P0077221 Zc3hc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077222.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29070143 29076121 - Zc3hc1 protein_coding retained_intron MGP_C57BL6NJ_T0077223.1 MGP_C57BL6NJ_G0030972.1 mouse_genomes_project 6 29072670 29076125 - Zc3hc1 protein_coding retained_intron MGP_C57BL6NJ_T0078305.1 MGP_C57BL6NJ_G0031258.1 mouse_genomes_project 6 60128254 60131418 + MGP_C57BL6NJ_P0078305 Tigd2 protein_coding protein_coding MGP_C57BL6NJ_T0011899.1 MGP_C57BL6NJ_G0009984.1 mouse_genomes_project 6 45906709 45907013 + Gm22839 misc_RNA misc_RNA MGP_C57BL6NJ_T0016051.1 MGP_C57BL6NJ_G0014096.1 mouse_genomes_project 6 139214978 139215549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077142.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28112029 28122724 + MGP_C57BL6NJ_P0077142 Irf5 protein_coding protein_coding MGP_C57BL6NJ_T0077143.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28112112 28127275 + MGP_C57BL6NJ_P0077143 Irf5 protein_coding protein_coding MGP_C57BL6NJ_T0077144.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28113674 28119402 + MGP_C57BL6NJ_P0077144 Irf5 protein_coding protein_coding MGP_C57BL6NJ_T0077145.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28114686 28122724 + MGP_C57BL6NJ_P0077145 Irf5 protein_coding protein_coding MGP_C57BL6NJ_T0077146.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28116652 28120751 + MGP_C57BL6NJ_P0077146 Irf5 protein_coding protein_coding MGP_C57BL6NJ_T0077150.1 MGP_C57BL6NJ_G0030964.1 mouse_genomes_project 6 28126550 28127262 + Irf5 protein_coding processed_transcript MGP_C57BL6NJ_T0101842.1 MGP_C57BL6NJ_G0039888.1 mouse_genomes_project 6 153797836 153797969 - Gm22792 snoRNA snoRNA MGP_C57BL6NJ_T0011059.1 MGP_C57BL6NJ_G0009144.1 mouse_genomes_project 6 126884542 126884639 - Gm25193 miRNA miRNA MGP_C57BL6NJ_T0078274.1 MGP_C57BL6NJ_G0031252.1 mouse_genomes_project 6 59206573 59207596 + MGP_C57BL6NJ_P0078274 Vmn1r29 protein_coding protein_coding MGP_C57BL6NJ_T0008745.1 MGP_C57BL6NJ_G0007075.1 mouse_genomes_project 6 34598751 34603332 - Gm42931 lincRNA lincRNA MGP_C57BL6NJ_T0078079.1 MGP_C57BL6NJ_G0031190.1 mouse_genomes_project 6 53206730 53352024 - Jazf1 protein_coding processed_transcript MGP_C57BL6NJ_T0078080.1 MGP_C57BL6NJ_G0031190.1 mouse_genomes_project 6 53206730 53216243 - Jazf1 protein_coding processed_transcript MGP_C57BL6NJ_T0078081.1 MGP_C57BL6NJ_G0031190.1 mouse_genomes_project 6 53206730 53518353 - MGP_C57BL6NJ_P0078081 Jazf1 protein_coding protein_coding MGP_C57BL6NJ_T0011034.1 MGP_C57BL6NJ_G0009119.1 mouse_genomes_project 6 86729967 86730074 - Mir6374 miRNA miRNA MGP_C57BL6NJ_T0016096.1 MGP_C57BL6NJ_G0014141.1 mouse_genomes_project 6 156276014 156279151 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079131.1 MGP_C57BL6NJ_G0031428.1 mouse_genomes_project 6 91161959 91171529 + MGP_C57BL6NJ_P0079131 Bmp10 protein_coding protein_coding MGP_C57BL6NJ_T0078166.1 MGP_C57BL6NJ_G0031206.1 mouse_genomes_project 6 55784372 55788790 - MGP_C57BL6NJ_P0078166 Inmt protein_coding protein_coding MGP_C57BL6NJ_T0078167.1 MGP_C57BL6NJ_G0031206.1 mouse_genomes_project 6 55786509 55788761 - Inmt protein_coding retained_intron MGP_C57BL6NJ_T0079686.1 MGP_C57BL6NJ_G0031542.1 mouse_genomes_project 6 114036681 114068830 + MGP_C57BL6NJ_P0079686 Edem1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079687.1 MGP_C57BL6NJ_G0031542.1 mouse_genomes_project 6 114036714 114068822 + MGP_C57BL6NJ_P0079687 Edem1 protein_coding protein_coding MGP_C57BL6NJ_T0079688.1 MGP_C57BL6NJ_G0031542.1 mouse_genomes_project 6 114044427 114051128 + Edem1 protein_coding processed_transcript MGP_C57BL6NJ_T0079689.1 MGP_C57BL6NJ_G0031542.1 mouse_genomes_project 6 114056677 114059709 + Edem1 protein_coding retained_intron MGP_C57BL6NJ_T0079690.1 MGP_C57BL6NJ_G0031542.1 mouse_genomes_project 6 114060457 114064999 + Edem1 protein_coding retained_intron MGP_C57BL6NJ_T0015710.1 MGP_C57BL6NJ_G0013755.1 mouse_genomes_project 6 37492622 37493046 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077016.1 MGP_C57BL6NJ_G0030938.1 mouse_genomes_project 6 23124785 23159195 + MGP_C57BL6NJ_P0077016 Hyal5 protein_coding protein_coding MGP_C57BL6NJ_T0077017.1 MGP_C57BL6NJ_G0030938.1 mouse_genomes_project 6 23147560 23159042 + MGP_C57BL6NJ_P0077017 Hyal5 protein_coding protein_coding MGP_C57BL6NJ_T0077018.1 MGP_C57BL6NJ_G0030938.1 mouse_genomes_project 6 23157773 23158982 + Hyal5 protein_coding processed_transcript MGP_C57BL6NJ_T0080128.1 MGP_C57BL6NJ_G0031622.1 mouse_genomes_project 6 124007283 124056117 - MGP_C57BL6NJ_P0080128 Ret protein_coding protein_coding MGP_C57BL6NJ_T0080129.1 MGP_C57BL6NJ_G0031622.1 mouse_genomes_project 6 124010104 124056702 - MGP_C57BL6NJ_P0080129 Ret protein_coding protein_coding MGP_C57BL6NJ_T0011925.1 MGP_C57BL6NJ_G0010010.1 mouse_genomes_project 6 104090050 104090297 + Gm24936 misc_RNA misc_RNA MGP_C57BL6NJ_T0101837.1 MGP_C57BL6NJ_G0039883.1 mouse_genomes_project 6 131986739 131986868 - Gm24175 snoRNA snoRNA MGP_C57BL6NJ_T0015888.1 MGP_C57BL6NJ_G0013933.1 mouse_genomes_project 6 88657229 88658169 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079535.1 MGP_C57BL6NJ_G0031515.1 mouse_genomes_project 6 101586083 101600084 - MGP_C57BL6NJ_P0079535 Lmod3 protein_coding protein_coding MGP_C57BL6NJ_T0081554.1 MGP_C57BL6NJ_G0031941.1 mouse_genomes_project 6 156159143 156174496 - MGP_C57BL6NJ_P0081554 Mansc4 protein_coding protein_coding MGP_C57BL6NJ_T0081555.1 MGP_C57BL6NJ_G0031941.1 mouse_genomes_project 6 156164508 156174465 - MGP_C57BL6NJ_P0081555 Mansc4 protein_coding protein_coding MGP_C57BL6NJ_T0015804.1 MGP_C57BL6NJ_G0013849.1 mouse_genomes_project 6 66715757 66716952 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000434.1 MGP_C57BL6NJ_G0000353.1 mouse_genomes_project 6 71140600 71141019 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0081013.1 MGP_C57BL6NJ_G0031821.1 mouse_genomes_project 6 140335567 140358026 + MGP_C57BL6NJ_P0081013 Prh1 protein_coding protein_coding MGP_C57BL6NJ_T0081014.1 MGP_C57BL6NJ_G0031821.1 mouse_genomes_project 6 140335569 140358026 + MGP_C57BL6NJ_P0081014 Prh1 protein_coding protein_coding MGP_C57BL6NJ_T0081015.1 MGP_C57BL6NJ_G0031821.1 mouse_genomes_project 6 140335569 140358393 + MGP_C57BL6NJ_P0081015 Prh1 protein_coding protein_coding MGP_C57BL6NJ_T0077626.1 MGP_C57BL6NJ_G0031054.1 mouse_genomes_project 6 40346845 40357002 - MGP_C57BL6NJ_P0077626 Moxd2 protein_coding protein_coding MGP_C57BL6NJ_T0079330.1 MGP_C57BL6NJ_G0031470.1 mouse_genomes_project 6 94168480 94169602 - MGP_C57BL6NJ_P0079330 Vmn1r53 protein_coding protein_coding MGP_C57BL6NJ_T0008688.1 MGP_C57BL6NJ_G0007036.1 mouse_genomes_project 6 8310630 8318719 - AA545190 lincRNA lincRNA MGP_C57BL6NJ_T0008689.1 MGP_C57BL6NJ_G0007036.1 mouse_genomes_project 6 8311069 8318694 - AA545190 lincRNA lincRNA MGP_C57BL6NJ_T0008690.1 MGP_C57BL6NJ_G0007036.1 mouse_genomes_project 6 8311128 8313437 - AA545190 lincRNA lincRNA MGP_C57BL6NJ_T0099134.1 MGP_C57BL6NJ_G0037198.1 mouse_genomes_project 6 91008645 91008757 + n-R5s164 rRNA rRNA MGP_C57BL6NJ_T0005183.1 MGP_C57BL6NJ_G0004426.1 mouse_genomes_project 6 91743980 91747278 + Gm5577 antisense antisense MGP_C57BL6NJ_T0005184.1 MGP_C57BL6NJ_G0004426.1 mouse_genomes_project 6 91744780 91747270 + Gm5577 antisense antisense MGP_C57BL6NJ_T0005185.1 MGP_C57BL6NJ_G0004426.1 mouse_genomes_project 6 91744780 91771078 + Gm5577 antisense antisense MGP_C57BL6NJ_T0008741.1 MGP_C57BL6NJ_G0007073.1 mouse_genomes_project 6 34218889 34230041 + 1810058I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008742.1 MGP_C57BL6NJ_G0007073.1 mouse_genomes_project 6 34218951 34227873 + 1810058I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008743.1 MGP_C57BL6NJ_G0007073.1 mouse_genomes_project 6 34218967 34228258 + 1810058I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0076935.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19824867 19906706 - MGP_C57BL6NJ_P0076935 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0076936.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19824867 19907146 - MGP_C57BL6NJ_P0076936 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0076937.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19848779 19906599 - MGP_C57BL6NJ_P0076937 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0076938.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19854579 19906532 - MGP_C57BL6NJ_P0076938 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0076939.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19892667 19906787 - MGP_C57BL6NJ_P0076939 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0076940.1 MGP_C57BL6NJ_G0030917.1 mouse_genomes_project 6 19905622 19906446 - MGP_C57BL6NJ_P0076940 Tspan12 protein_coding protein_coding MGP_C57BL6NJ_T0015725.1 MGP_C57BL6NJ_G0013770.1 mouse_genomes_project 6 42285002 42285168 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016017.1 MGP_C57BL6NJ_G0014062.1 mouse_genomes_project 6 134341265 134343077 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077594.1 MGP_C57BL6NJ_G0031043.1 mouse_genomes_project 6 39821096 39861007 - MGP_C57BL6NJ_P0077594 E330009J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0077595.1 MGP_C57BL6NJ_G0031043.1 mouse_genomes_project 6 39827221 39861005 - MGP_C57BL6NJ_P0077595 E330009J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0077596.1 MGP_C57BL6NJ_G0031043.1 mouse_genomes_project 6 39840777 39856282 - MGP_C57BL6NJ_P0077596 E330009J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0077597.1 MGP_C57BL6NJ_G0031043.1 mouse_genomes_project 6 39845707 39860987 - E330009J07Rik protein_coding retained_intron MGP_C57BL6NJ_T0081549.1 MGP_C57BL6NJ_G0031940.1 mouse_genomes_project 6 156124456 156132273 + Mrps35 protein_coding retained_intron MGP_C57BL6NJ_T0081550.1 MGP_C57BL6NJ_G0031940.1 mouse_genomes_project 6 156124456 156158075 + MGP_C57BL6NJ_P0081550 Mrps35 protein_coding protein_coding MGP_C57BL6NJ_T0081551.1 MGP_C57BL6NJ_G0031940.1 mouse_genomes_project 6 156126287 156137560 + MGP_C57BL6NJ_P0081551 Mrps35 protein_coding protein_coding MGP_C57BL6NJ_T0081552.1 MGP_C57BL6NJ_G0031940.1 mouse_genomes_project 6 156141926 156153373 + Mrps35 protein_coding processed_transcript MGP_C57BL6NJ_T0081553.1 MGP_C57BL6NJ_G0031940.1 mouse_genomes_project 6 156142943 156153452 + Mrps35 protein_coding processed_transcript MGP_C57BL6NJ_T0011018.1 MGP_C57BL6NJ_G0009103.1 mouse_genomes_project 6 50807088 50807199 + Mir6371 miRNA miRNA MGP_C57BL6NJ_T0079427.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95795197 95829208 - MGP_C57BL6NJ_P0079427 Grip2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079428.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95795201 95862914 - MGP_C57BL6NJ_P0079428 Grip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079429.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95795201 95840425 - MGP_C57BL6NJ_P0079429 Grip2 protein_coding protein_coding MGP_C57BL6NJ_T0079430.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95797140 95840287 - MGP_C57BL6NJ_P0079430 Grip2 protein_coding protein_coding MGP_C57BL6NJ_T0079431.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95816633 95840362 - MGP_C57BL6NJ_P0079431 Grip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079432.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95817702 95829213 - MGP_C57BL6NJ_P0079432 Grip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079433.1 MGP_C57BL6NJ_G0031490.1 mouse_genomes_project 6 95825674 95829229 - Grip2 protein_coding retained_intron MGP_C57BL6NJ_T0002707.1 MGP_C57BL6NJ_G0002586.1 mouse_genomes_project 6 41057261 41057314 + MGP_C57BL6NJ_P0002707 Trbj1-6 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0100514.1 MGP_C57BL6NJ_G0038560.1 mouse_genomes_project 6 30651309 30651414 - Gm24502 snRNA snRNA MGP_C57BL6NJ_T0000218.1 MGP_C57BL6NJ_G0000162.1 mouse_genomes_project 6 70083982 70086665 + MGP_C57BL6NJ_P0000218 Igkv1-110 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0016069.1 MGP_C57BL6NJ_G0014114.1 mouse_genomes_project 6 141736920 141737250 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081599.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158037192 158038355 - Caprin2 protein_coding retained_intron MGP_C57BL6NJ_T0081600.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158037192 158092327 - MGP_C57BL6NJ_P0081600 Caprin2 protein_coding protein_coding MGP_C57BL6NJ_T0081601.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158037193 158046032 - MGP_C57BL6NJ_P0081601 Caprin2 protein_coding protein_coding MGP_C57BL6NJ_T0081602.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158037193 158092240 - MGP_C57BL6NJ_P0081602 Caprin2 protein_coding protein_coding MGP_C57BL6NJ_T0081603.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158038739 158043820 - Caprin2 protein_coding retained_intron MGP_C57BL6NJ_T0081604.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158039267 158046003 - Caprin2 protein_coding processed_transcript MGP_C57BL6NJ_T0081605.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158042245 158055098 - Caprin2 protein_coding processed_transcript MGP_C57BL6NJ_T0081606.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158073274 158091549 - MGP_C57BL6NJ_P0081606 Caprin2 protein_coding protein_coding MGP_C57BL6NJ_T0081607.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158079896 158086187 - Caprin2 protein_coding retained_intron MGP_C57BL6NJ_T0081608.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158083030 158092252 - Caprin2 protein_coding processed_transcript MGP_C57BL6NJ_T0081609.1 MGP_C57BL6NJ_G0031949.1 mouse_genomes_project 6 158090259 158091699 - Caprin2 protein_coding processed_transcript MGP_C57BL6NJ_T0078914.1 MGP_C57BL6NJ_G0031384.1 mouse_genomes_project 6 88028638 88042415 - MGP_C57BL6NJ_P0078914 Cyp26b1 protein_coding protein_coding MGP_C57BL6NJ_T0078915.1 MGP_C57BL6NJ_G0031384.1 mouse_genomes_project 6 88028664 88042415 - MGP_C57BL6NJ_P0078915 Cyp26b1 protein_coding protein_coding MGP_C57BL6NJ_T0102537.1 MGP_C57BL6NJ_G0040384.1 mouse_genomes_project 6 137544764 137559205 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0080349.1 MGP_C57BL6NJ_G0031657.1 mouse_genomes_project 6 127775560 127780052 + MGP_C57BL6NJ_P0080349 A2m protein_coding protein_coding MGP_C57BL6NJ_T0080350.1 MGP_C57BL6NJ_G0031657.1 mouse_genomes_project 6 127776412 127822575 + MGP_C57BL6NJ_P0080350 A2m protein_coding protein_coding MGP_C57BL6NJ_T0080351.1 MGP_C57BL6NJ_G0031657.1 mouse_genomes_project 6 127801614 127804193 + A2m protein_coding retained_intron MGP_C57BL6NJ_T0077893.1 MGP_C57BL6NJ_G0031144.1 mouse_genomes_project 6 48795869 48832965 + MGP_C57BL6NJ_P0077893 Gm28053 protein_coding protein_coding MGP_C57BL6NJ_T0077895.1 MGP_C57BL6NJ_G0031144.1 mouse_genomes_project 6 48795916 48806998 + Gm28053 protein_coding retained_intron MGP_C57BL6NJ_T0077899.1 MGP_C57BL6NJ_G0031144.1 mouse_genomes_project 6 48817746 48833009 + MGP_C57BL6NJ_P0077899 Gm28053 protein_coding protein_coding MGP_C57BL6NJ_T0079662.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113268290 113354961 - MGP_C57BL6NJ_P0079662 Sumf1 protein_coding protein_coding MGP_C57BL6NJ_T0079663.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113269731 113288616 - Sumf1 protein_coding processed_transcript MGP_C57BL6NJ_T0079664.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113269860 113354935 - MGP_C57BL6NJ_P0079664 Sumf1 protein_coding protein_coding MGP_C57BL6NJ_T0079665.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113269860 113354935 - MGP_C57BL6NJ_P0079665 Sumf1 protein_coding protein_coding MGP_C57BL6NJ_T0079666.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113279558 113310954 - MGP_C57BL6NJ_P0079666 Sumf1 protein_coding protein_coding MGP_C57BL6NJ_T0079667.1 MGP_C57BL6NJ_G0031538.1 mouse_genomes_project 6 113310571 113320234 - Sumf1 protein_coding retained_intron MGP_C57BL6NJ_T0103310.1 MGP_C57BL6NJ_G0041103.1 mouse_genomes_project 6 141251579 141253662 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002259.1 MGP_C57BL6NJ_G0002150.1 mouse_genomes_project 6 118939903 118943014 + TEC TEC MGP_C57BL6NJ_T0016070.1 MGP_C57BL6NJ_G0014115.1 mouse_genomes_project 6 141867935 141868602 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078372.1 MGP_C57BL6NJ_G0031273.1 mouse_genomes_project 6 68084502 68094477 - MGP_C57BL6NJ_P0078372 Vmn1r32 protein_coding protein_coding MGP_C57BL6NJ_T0077940.1 MGP_C57BL6NJ_G0031156.1 mouse_genomes_project 6 49191096 49205349 + MGP_C57BL6NJ_P0077940 Malsu1 protein_coding protein_coding MGP_C57BL6NJ_T0077941.1 MGP_C57BL6NJ_G0031156.1 mouse_genomes_project 6 49191149 49205349 + MGP_C57BL6NJ_P0077941 Malsu1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077942.1 MGP_C57BL6NJ_G0031156.1 mouse_genomes_project 6 49191193 49198727 + Malsu1 protein_coding processed_transcript MGP_C57BL6NJ_T0077943.1 MGP_C57BL6NJ_G0031156.1 mouse_genomes_project 6 49191375 49202132 + Malsu1 protein_coding processed_transcript MGP_C57BL6NJ_T0077944.1 MGP_C57BL6NJ_G0031156.1 mouse_genomes_project 6 49201182 49203276 + Malsu1 protein_coding retained_intron MGP_C57BL6NJ_T0008712.1 MGP_C57BL6NJ_G0007052.1 mouse_genomes_project 6 29151739 29156844 + 1700012C14Rik lincRNA lincRNA MGP_C57BL6NJ_T0008713.1 MGP_C57BL6NJ_G0007052.1 mouse_genomes_project 6 29152596 29156896 + 1700012C14Rik lincRNA lincRNA MGP_C57BL6NJ_T0103259.1 MGP_C57BL6NJ_G0041053.1 mouse_genomes_project 6 59308016 59308931 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078202.1 MGP_C57BL6NJ_G0031216.1 mouse_genomes_project 6 57443447 57444861 + Avl9 protein_coding retained_intron MGP_C57BL6NJ_T0078203.1 MGP_C57BL6NJ_G0031216.1 mouse_genomes_project 6 57443475 57488143 + MGP_C57BL6NJ_P0078203 Avl9 protein_coding protein_coding MGP_C57BL6NJ_T0078204.1 MGP_C57BL6NJ_G0031216.1 mouse_genomes_project 6 57443486 57466878 + MGP_C57BL6NJ_P0078204 Avl9 protein_coding protein_coding MGP_C57BL6NJ_T0078205.1 MGP_C57BL6NJ_G0031216.1 mouse_genomes_project 6 57443490 57457972 + MGP_C57BL6NJ_P0078205 Avl9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078206.1 MGP_C57BL6NJ_G0031216.1 mouse_genomes_project 6 57470633 57479348 + Avl9 protein_coding retained_intron MGP_C57BL6NJ_T0015874.1 MGP_C57BL6NJ_G0013919.1 mouse_genomes_project 6 86157334 86158528 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015961.1 MGP_C57BL6NJ_G0014006.1 mouse_genomes_project 6 119617744 119617796 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099502.1 MGP_C57BL6NJ_G0037555.1 mouse_genomes_project 6 119343460 119345338 - Gm44167 sense_intronic sense_intronic MGP_C57BL6NJ_T0008937.1 MGP_C57BL6NJ_G0007220.1 mouse_genomes_project 6 143934747 143946149 + Gm14329 lincRNA lincRNA MGP_C57BL6NJ_T0101811.1 MGP_C57BL6NJ_G0039857.1 mouse_genomes_project 6 94833537 94833633 + Gm25185 snoRNA snoRNA MGP_C57BL6NJ_T0008778.1 MGP_C57BL6NJ_G0007096.1 mouse_genomes_project 6 52365162 52384222 + Gm44077 lincRNA lincRNA MGP_C57BL6NJ_T0000280.1 MGP_C57BL6NJ_G0000208.1 mouse_genomes_project 6 72365712 72366270 + MGP_C57BL6NJ_P0000280 Igkv6-25 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015954.1 MGP_C57BL6NJ_G0013999.1 mouse_genomes_project 6 118472347 118472474 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002258.1 MGP_C57BL6NJ_G0002149.1 mouse_genomes_project 6 118812595 118813645 - TEC TEC MGP_C57BL6NJ_T0081455.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154252305 154292275 - MGP_C57BL6NJ_P0081455 Kras protein_coding protein_coding MGP_C57BL6NJ_T0081456.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154255586 154268745 - Kras protein_coding processed_transcript MGP_C57BL6NJ_T0081457.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154255827 154292275 - MGP_C57BL6NJ_P0081457 Kras protein_coding protein_coding MGP_C57BL6NJ_T0081458.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154255851 154292213 - MGP_C57BL6NJ_P0081458 Kras protein_coding protein_coding MGP_C57BL6NJ_T0081459.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154255903 154292206 - MGP_C57BL6NJ_P0081459 Kras protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081460.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154256216 154263500 - Kras protein_coding retained_intron MGP_C57BL6NJ_T0081461.1 MGP_C57BL6NJ_G0031923.1 mouse_genomes_project 6 154285124 154292238 - MGP_C57BL6NJ_P0081461 Kras protein_coding protein_coding MGP_C57BL6NJ_T0008839.1 MGP_C57BL6NJ_G0007145.1 mouse_genomes_project 6 90422302 90428460 + lincRNA lincRNA MGP_C57BL6NJ_T0015746.1 MGP_C57BL6NJ_G0013791.1 mouse_genomes_project 6 49074200 49075446 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079315.1 MGP_C57BL6NJ_G0031460.1 mouse_genomes_project 6 93772187 93773256 - MGP_C57BL6NJ_P0079315 Vmn1r43 protein_coding protein_coding MGP_C57BL6NJ_T0080452.1 MGP_C57BL6NJ_G0031683.1 mouse_genomes_project 6 129792221 129824986 + MGP_C57BL6NJ_P0080452 Vmn2r19 protein_coding protein_coding MGP_C57BL6NJ_T0103281.1 MGP_C57BL6NJ_G0041075.1 mouse_genomes_project 6 128114540 128596860 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011002.1 MGP_C57BL6NJ_G0009087.1 mouse_genomes_project 6 27586457 27586530 + Mir129-1 miRNA miRNA MGP_C57BL6NJ_T0080947.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136762983 136771260 + MGP_C57BL6NJ_P0080947 Klrd1 protein_coding protein_coding MGP_C57BL6NJ_T0080948.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136762983 136770954 + MGP_C57BL6NJ_P0080948 Klrd1 protein_coding protein_coding MGP_C57BL6NJ_T0080949.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136763011 136771255 + MGP_C57BL6NJ_P0080949 Klrd1 protein_coding protein_coding MGP_C57BL6NJ_T0080950.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136763026 136771098 + MGP_C57BL6NJ_P0080950 Klrd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080951.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136766640 136770938 + MGP_C57BL6NJ_P0080951 Klrd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080952.1 MGP_C57BL6NJ_G0031790.1 mouse_genomes_project 6 136767691 136770937 + Klrd1 protein_coding retained_intron MGP_C57BL6NJ_T0078502.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74320928 74372169 + MGP_C57BL6NJ_P0078502 Polr1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078503.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74320936 74394733 + MGP_C57BL6NJ_P0078503 Polr1a protein_coding protein_coding MGP_C57BL6NJ_T0078504.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74320944 74334280 + Polr1a protein_coding retained_intron MGP_C57BL6NJ_T0078505.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74324261 74372054 + Polr1a protein_coding retained_intron MGP_C57BL6NJ_T0078506.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74338987 74339605 + Polr1a protein_coding retained_intron MGP_C57BL6NJ_T0078507.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74344074 74344666 + Polr1a protein_coding retained_intron MGP_C57BL6NJ_T0078508.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74348885 74358554 + Polr1a protein_coding processed_transcript MGP_C57BL6NJ_T0078509.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74365378 74371855 + MGP_C57BL6NJ_P0078509 Polr1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078510.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74365379 74366773 + Polr1a protein_coding retained_intron MGP_C57BL6NJ_T0078511.1 MGP_C57BL6NJ_G0031305.1 mouse_genomes_project 6 74373989 74397193 + MGP_C57BL6NJ_P0078511 Polr1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005125.1 MGP_C57BL6NJ_G0004389.1 mouse_genomes_project 6 54673868 54677919 - 9530036M11Rik antisense antisense MGP_C57BL6NJ_T0015644.1 MGP_C57BL6NJ_G0013689.1 mouse_genomes_project 6 6277908 6278221 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102519.1 MGP_C57BL6NJ_G0040375.1 mouse_genomes_project 6 88664301 88668630 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102520.1 MGP_C57BL6NJ_G0040375.1 mouse_genomes_project 6 88668122 88673803 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102521.1 MGP_C57BL6NJ_G0040375.1 mouse_genomes_project 6 88668325 88674058 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0077045.1 MGP_C57BL6NJ_G0030944.1 mouse_genomes_project 6 26939251 26944885 - MGP_C57BL6NJ_P0077045 Gcc1 protein_coding protein_coding MGP_C57BL6NJ_T0077046.1 MGP_C57BL6NJ_G0030944.1 mouse_genomes_project 6 26940989 26952855 - MGP_C57BL6NJ_P0077046 Gcc1 protein_coding protein_coding MGP_C57BL6NJ_T0077047.1 MGP_C57BL6NJ_G0030944.1 mouse_genomes_project 6 26942822 26944019 - MGP_C57BL6NJ_P0077047 Gcc1 protein_coding protein_coding MGP_C57BL6NJ_T0077048.1 MGP_C57BL6NJ_G0030944.1 mouse_genomes_project 6 26944440 26947050 - MGP_C57BL6NJ_P0077048 Gcc1 protein_coding protein_coding MGP_C57BL6NJ_T0015887.1 MGP_C57BL6NJ_G0013932.1 mouse_genomes_project 6 88602791 88603368 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000436.1 MGP_C57BL6NJ_G0000355.1 mouse_genomes_project 6 71331115 71331591 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000429.1 MGP_C57BL6NJ_G0000348.1 mouse_genomes_project 6 71097245 71097712 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0103244.1 MGP_C57BL6NJ_G0041038.1 mouse_genomes_project 6 42750643 42751560 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002633.1 MGP_C57BL6NJ_G0002519.1 mouse_genomes_project 6 41059841 41061505 + MGP_C57BL6NJ_P0002633 Trbc1 TR_C_gene TR_C_gene MGP_C57BL6NJ_T0002634.1 MGP_C57BL6NJ_G0002519.1 mouse_genomes_project 6 41059841 41060971 + MGP_C57BL6NJ_P0002634 Trbc1 TR_C_gene TR_C_gene MGP_C57BL6NJ_T0015642.1 MGP_C57BL6NJ_G0013687.1 mouse_genomes_project 6 5457662 5459446 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081105.1 MGP_C57BL6NJ_G0031855.1 mouse_genomes_project 6 143159510 143192539 + MGP_C57BL6NJ_P0081105 Gprc5a protein_coding protein_coding MGP_C57BL6NJ_T0002078.1 MGP_C57BL6NJ_G0001969.1 mouse_genomes_project 6 27103559 27106474 + TEC TEC MGP_C57BL6NJ_T0078612.1 MGP_C57BL6NJ_G0031325.1 mouse_genomes_project 6 75540621 75733823 - MGP_C57BL6NJ_P0078612 Dnah6 protein_coding protein_coding MGP_C57BL6NJ_T0078613.1 MGP_C57BL6NJ_G0031325.1 mouse_genomes_project 6 75540624 75733843 - MGP_C57BL6NJ_P0078613 Dnah6 protein_coding protein_coding MGP_C57BL6NJ_T0078614.1 MGP_C57BL6NJ_G0031325.1 mouse_genomes_project 6 75540757 75730790 - MGP_C57BL6NJ_P0078614 Dnah6 protein_coding protein_coding MGP_C57BL6NJ_T0078615.1 MGP_C57BL6NJ_G0031325.1 mouse_genomes_project 6 75605088 75655155 - Dnah6 protein_coding retained_intron MGP_C57BL6NJ_T0080890.1 MGP_C57BL6NJ_G0031773.1 mouse_genomes_project 6 135977843 136019926 - MGP_C57BL6NJ_P0080890 BC035044 protein_coding protein_coding MGP_C57BL6NJ_T0080891.1 MGP_C57BL6NJ_G0031773.1 mouse_genomes_project 6 136007131 136019924 - MGP_C57BL6NJ_P0080891 BC035044 protein_coding protein_coding MGP_C57BL6NJ_T0102286.1 MGP_C57BL6NJ_G0040266.1 mouse_genomes_project 6 9508148 9518811 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102287.1 MGP_C57BL6NJ_G0040266.1 mouse_genomes_project 6 9508340 9508900 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0077434.1 MGP_C57BL6NJ_G0031009.1 mouse_genomes_project 6 34479796 34519270 - MGP_C57BL6NJ_P0077434 Mtpn protein_coding protein_coding MGP_C57BL6NJ_T0077435.1 MGP_C57BL6NJ_G0031009.1 mouse_genomes_project 6 34501360 34519181 - MGP_C57BL6NJ_P0077435 Mtpn protein_coding protein_coding MGP_C57BL6NJ_T0080953.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136782711 136799192 - MGP_C57BL6NJ_P0080953 Klrk1 protein_coding protein_coding MGP_C57BL6NJ_T0080954.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136786878 136798100 - MGP_C57BL6NJ_P0080954 Klrk1 protein_coding protein_coding MGP_C57BL6NJ_T0080955.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136786924 136799169 - MGP_C57BL6NJ_P0080955 Klrk1 protein_coding protein_coding MGP_C57BL6NJ_T0080956.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136790973 136797909 - Klrk1 protein_coding retained_intron MGP_C57BL6NJ_T0080957.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136791048 136798012 - Klrk1 protein_coding retained_intron MGP_C57BL6NJ_T0080958.1 MGP_C57BL6NJ_G0031791.1 mouse_genomes_project 6 136795929 136799188 - Klrk1 protein_coding retained_intron MGP_C57BL6NJ_T0015872.1 MGP_C57BL6NJ_G0013917.1 mouse_genomes_project 6 85036158 85036849 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015938.1 MGP_C57BL6NJ_G0013983.1 mouse_genomes_project 6 112628458 112629107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016058.1 MGP_C57BL6NJ_G0014103.1 mouse_genomes_project 6 140092959 140093449 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078171.1 MGP_C57BL6NJ_G0031208.1 mouse_genomes_project 6 55965138 55977262 + MGP_C57BL6NJ_P0078171 Aqp1 protein_coding protein_coding MGP_C57BL6NJ_T0078685.1 MGP_C57BL6NJ_G0031345.1 mouse_genomes_project 6 85971728 85972976 - Hk2 protein_coding processed_transcript MGP_C57BL6NJ_T0078686.1 MGP_C57BL6NJ_G0031345.1 mouse_genomes_project 6 85972451 86023093 - MGP_C57BL6NJ_P0078686 Hk2 protein_coding protein_coding MGP_C57BL6NJ_T0078687.1 MGP_C57BL6NJ_G0031345.1 mouse_genomes_project 6 86007813 86022062 - MGP_C57BL6NJ_P0078687 Hk2 protein_coding protein_coding MGP_C57BL6NJ_T0002814.1 MGP_C57BL6NJ_G0002678.1 mouse_genomes_project 6 40529025 40529497 + MGP_C57BL6NJ_P0002814 Trbv5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0099140.1 MGP_C57BL6NJ_G0037204.1 mouse_genomes_project 6 148796361 148796472 - Gm24174 rRNA rRNA MGP_C57BL6NJ_T0076640.1 MGP_C57BL6NJ_G0030862.1 mouse_genomes_project 6 766222 770764 + MGP_C57BL6NJ_P0076640 Gng11 protein_coding protein_coding MGP_C57BL6NJ_T0002255.1 MGP_C57BL6NJ_G0002146.1 mouse_genomes_project 6 117542324 117542880 - TEC TEC MGP_C57BL6NJ_T0000300.1 MGP_C57BL6NJ_G0000225.1 mouse_genomes_project 6 72998351 72998659 + MGP_C57BL6NJ_P0000300 Igkv3-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002294.1 MGP_C57BL6NJ_G0002184.1 mouse_genomes_project 6 136916166 136916534 - TEC TEC MGP_C57BL6NJ_T0077357.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511647 33699851 + MGP_C57BL6NJ_P0077357 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077358.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511659 33677942 + MGP_C57BL6NJ_P0077358 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077359.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511691 33606993 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077360.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511691 33665754 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077361.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511711 33699863 + MGP_C57BL6NJ_P0077361 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077362.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511712 33699863 + MGP_C57BL6NJ_P0077362 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077363.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33511767 33578778 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077364.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33631774 33699870 + MGP_C57BL6NJ_P0077364 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077365.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33631822 33633086 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077366.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33631822 33699865 + MGP_C57BL6NJ_P0077366 Cald1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077367.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33631966 33698091 + MGP_C57BL6NJ_P0077367 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077368.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33670296 33680251 + MGP_C57BL6NJ_P0077368 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077369.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33670325 33680161 + MGP_C57BL6NJ_P0077369 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077370.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33670351 33680161 + MGP_C57BL6NJ_P0077370 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077371.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33670730 33686478 + MGP_C57BL6NJ_P0077371 Cald1 protein_coding protein_coding MGP_C57BL6NJ_T0077372.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33672129 33677861 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077373.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33687213 33691185 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0077374.1 MGP_C57BL6NJ_G0030998.1 mouse_genomes_project 6 33689309 33690992 + Cald1 protein_coding retained_intron MGP_C57BL6NJ_T0002284.1 MGP_C57BL6NJ_G0002174.1 mouse_genomes_project 6 134738250 134740528 - TEC TEC MGP_C57BL6NJ_T0011934.1 MGP_C57BL6NJ_G0010019.1 mouse_genomes_project 6 134821818 134822117 + Gm23098 misc_RNA misc_RNA MGP_C57BL6NJ_T0079517.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101438198 101483335 - MGP_C57BL6NJ_P0079517 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0079518.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101440146 101483036 - Eogt protein_coding processed_transcript MGP_C57BL6NJ_T0079519.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101440175 101483080 - MGP_C57BL6NJ_P0079519 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0079520.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101440360 101449886 - Eogt protein_coding processed_transcript MGP_C57BL6NJ_T0079521.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101470176 101481937 - MGP_C57BL6NJ_P0079521 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0079522.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101478132 101481947 - MGP_C57BL6NJ_P0079522 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0079523.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101479422 101483013 - MGP_C57BL6NJ_P0079523 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0079524.1 MGP_C57BL6NJ_G0031511.1 mouse_genomes_project 6 101479476 101483077 - MGP_C57BL6NJ_P0079524 Eogt protein_coding protein_coding MGP_C57BL6NJ_T0000247.1 MGP_C57BL6NJ_G0000184.1 mouse_genomes_project 6 71397093 71397379 - MGP_C57BL6NJ_P0000247 Igkv4-63 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0078213.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57627098 57648265 - MGP_C57BL6NJ_P0078213 Nt5c3 protein_coding protein_coding MGP_C57BL6NJ_T0078214.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57627098 57670287 - MGP_C57BL6NJ_P0078214 Nt5c3 protein_coding protein_coding MGP_C57BL6NJ_T0078215.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57627649 57670174 - MGP_C57BL6NJ_P0078215 Nt5c3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078216.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57627682 57670231 - MGP_C57BL6NJ_P0078216 Nt5c3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078217.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57629489 57670079 - MGP_C57BL6NJ_P0078217 Nt5c3 protein_coding protein_coding MGP_C57BL6NJ_T0078218.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57631363 57634562 - Nt5c3 protein_coding retained_intron MGP_C57BL6NJ_T0078219.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57637917 57670245 - Nt5c3 protein_coding processed_transcript MGP_C57BL6NJ_T0078220.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57639179 57670212 - Nt5c3 protein_coding processed_transcript MGP_C57BL6NJ_T0078221.1 MGP_C57BL6NJ_G0031219.1 mouse_genomes_project 6 57642172 57648262 - Nt5c3 protein_coding retained_intron MGP_C57BL6NJ_T0002244.1 MGP_C57BL6NJ_G0002135.1 mouse_genomes_project 6 106014572 106017441 - TEC TEC MGP_C57BL6NJ_T0080922.1 MGP_C57BL6NJ_G0031782.1 mouse_genomes_project 6 136536812 136548766 - MGP_C57BL6NJ_P0080922 Clec12b protein_coding protein_coding MGP_C57BL6NJ_T0080923.1 MGP_C57BL6NJ_G0031782.1 mouse_genomes_project 6 136537084 136549137 - MGP_C57BL6NJ_P0080923 Clec12b protein_coding protein_coding MGP_C57BL6NJ_T0005207.1 MGP_C57BL6NJ_G0004441.1 mouse_genomes_project 6 105732724 105878326 + Gm43948 antisense antisense MGP_C57BL6NJ_T0008740.1 MGP_C57BL6NJ_G0007072.1 mouse_genomes_project 6 33567385 33569922 - Gm13861 lincRNA lincRNA MGP_C57BL6NJ_T0079035.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066102 90098400 + MGP_C57BL6NJ_P0079035 Tia1 protein_coding protein_coding MGP_C57BL6NJ_T0079036.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066102 90100604 + MGP_C57BL6NJ_P0079036 Tia1 protein_coding protein_coding MGP_C57BL6NJ_T0079037.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066118 90067053 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079038.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066165 90068994 + Tia1 protein_coding processed_transcript MGP_C57BL6NJ_T0079039.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066174 90083159 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079040.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066179 90084962 + Tia1 protein_coding processed_transcript MGP_C57BL6NJ_T0079041.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066179 90094971 + MGP_C57BL6NJ_P0079041 Tia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079042.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066187 90097971 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079043.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066196 90099384 + MGP_C57BL6NJ_P0079043 Tia1 protein_coding protein_coding MGP_C57BL6NJ_T0079044.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066197 90097970 + MGP_C57BL6NJ_P0079044 Tia1 protein_coding protein_coding MGP_C57BL6NJ_T0079045.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066200 90095026 + MGP_C57BL6NJ_P0079045 Tia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079046.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066206 90090365 + Tia1 protein_coding processed_transcript MGP_C57BL6NJ_T0079047.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066208 90100426 + MGP_C57BL6NJ_P0079047 Tia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079048.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066219 90085008 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079049.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066219 90099379 + MGP_C57BL6NJ_P0079049 Tia1 protein_coding protein_coding MGP_C57BL6NJ_T0079050.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066243 90085043 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079051.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90066356 90091788 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079052.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90077247 90087155 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079053.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90080958 90083618 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079054.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90084372 90090117 + Tia1 protein_coding processed_transcript MGP_C57BL6NJ_T0079055.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90084564 90092012 + Tia1 protein_coding processed_transcript MGP_C57BL6NJ_T0079056.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90085064 90090351 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079057.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90085096 90090925 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079058.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90085423 90094988 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079059.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90087148 90091136 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079060.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90090330 90091496 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079061.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90091502 90092202 + Tia1 protein_coding retained_intron MGP_C57BL6NJ_T0079062.1 MGP_C57BL6NJ_G0031411.1 mouse_genomes_project 6 90091977 90097501 + MGP_C57BL6NJ_P0079062 Tia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078943.1 MGP_C57BL6NJ_G0031391.1 mouse_genomes_project 6 88972441 88979979 + MGP_C57BL6NJ_P0078943 Noto protein_coding protein_coding MGP_C57BL6NJ_T0078944.1 MGP_C57BL6NJ_G0031391.1 mouse_genomes_project 6 88972623 88979386 + MGP_C57BL6NJ_P0078944 Noto protein_coding protein_coding MGP_C57BL6NJ_T0000293.1 MGP_C57BL6NJ_G0000218.1 mouse_genomes_project 6 72747956 72748556 + MGP_C57BL6NJ_P0000293 Igkv3-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0081215.1 MGP_C57BL6NJ_G0031881.1 mouse_genomes_project 6 146135447 146152219 + MGP_C57BL6NJ_P0081215 Strap protein_coding protein_coding MGP_C57BL6NJ_T0081216.1 MGP_C57BL6NJ_G0031881.1 mouse_genomes_project 6 146145405 146149040 + Strap protein_coding processed_transcript MGP_C57BL6NJ_T0081217.1 MGP_C57BL6NJ_G0031881.1 mouse_genomes_project 6 146149511 146150963 + Strap protein_coding retained_intron MGP_C57BL6NJ_T0015820.1 MGP_C57BL6NJ_G0013865.1 mouse_genomes_project 6 68586701 68586996 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008723.1 MGP_C57BL6NJ_G0007059.1 mouse_genomes_project 6 30108140 30142535 - Mkln1os lincRNA lincRNA MGP_C57BL6NJ_T0008725.1 MGP_C57BL6NJ_G0007059.1 mouse_genomes_project 6 30125007 30142515 - Mkln1os lincRNA lincRNA MGP_C57BL6NJ_T0008726.1 MGP_C57BL6NJ_G0007059.1 mouse_genomes_project 6 30126654 30142521 - Mkln1os lincRNA lincRNA MGP_C57BL6NJ_T0077765.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 42980433 43328015 - MGP_C57BL6NJ_P0077765 Tpk1 protein_coding protein_coding MGP_C57BL6NJ_T0077766.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 42980505 43292909 - Tpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0077767.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 42980706 43327912 - MGP_C57BL6NJ_P0077767 Tpk1 protein_coding protein_coding MGP_C57BL6NJ_T0077768.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 42982274 43128408 - Tpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0077769.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 43253949 43327956 - Tpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0077770.1 MGP_C57BL6NJ_G0031115.1 mouse_genomes_project 6 43255401 43327618 - Tpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0002315.1 MGP_C57BL6NJ_G0002205.1 mouse_genomes_project 6 150191313 150194857 + TEC TEC MGP_C57BL6NJ_T0015895.1 MGP_C57BL6NJ_G0013940.1 mouse_genomes_project 6 91709787 91710201 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008901.1 MGP_C57BL6NJ_G0007194.1 mouse_genomes_project 6 125870418 125877405 - 4930540M05Rik lincRNA lincRNA MGP_C57BL6NJ_T0000229.1 MGP_C57BL6NJ_G0000170.1 mouse_genomes_project 6 70529709 70530189 - MGP_C57BL6NJ_P0000229 Igkv10-96 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015877.1 MGP_C57BL6NJ_G0013922.1 mouse_genomes_project 6 87174180 87174558 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080424.1 MGP_C57BL6NJ_G0031675.1 mouse_genomes_project 6 129412322 129426231 + MGP_C57BL6NJ_P0080424 Clec4a3 protein_coding protein_coding MGP_C57BL6NJ_T0080425.1 MGP_C57BL6NJ_G0031675.1 mouse_genomes_project 6 129412451 129426230 + MGP_C57BL6NJ_P0080425 Clec4a3 protein_coding protein_coding MGP_C57BL6NJ_T0080426.1 MGP_C57BL6NJ_G0031675.1 mouse_genomes_project 6 129412585 129422772 + MGP_C57BL6NJ_P0080426 Clec4a3 protein_coding protein_coding MGP_C57BL6NJ_T0010996.1 MGP_C57BL6NJ_G0009081.1 mouse_genomes_project 6 465170 465277 - Mir489 miRNA miRNA MGP_C57BL6NJ_T0005062.1 MGP_C57BL6NJ_G0004344.1 mouse_genomes_project 6 3821771 3869772 - Dlx6os1 antisense antisense MGP_C57BL6NJ_T0005063.1 MGP_C57BL6NJ_G0004344.1 mouse_genomes_project 6 3822125 3879441 - Dlx6os1 antisense antisense MGP_C57BL6NJ_T0011019.1 MGP_C57BL6NJ_G0009104.1 mouse_genomes_project 6 51565422 51565521 - Mir148a miRNA miRNA MGP_C57BL6NJ_T0002181.1 MGP_C57BL6NJ_G0002072.1 mouse_genomes_project 6 86746261 86750784 - TEC TEC MGP_C57BL6NJ_T0077450.1 MGP_C57BL6NJ_G0031014.1 mouse_genomes_project 6 36659605 36710244 + MGP_C57BL6NJ_P0077450 Akr1d1 protein_coding protein_coding MGP_C57BL6NJ_T0077451.1 MGP_C57BL6NJ_G0031014.1 mouse_genomes_project 6 36670424 36686079 + Akr1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0103313.1 MGP_C57BL6NJ_G0041106.1 mouse_genomes_project 6 141598807 141600770 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077006.1 MGP_C57BL6NJ_G0030934.1 mouse_genomes_project 6 22880103 22931272 - MGP_C57BL6NJ_P0077006 Wasl protein_coding protein_coding MGP_C57BL6NJ_T0077007.1 MGP_C57BL6NJ_G0030934.1 mouse_genomes_project 6 22892950 22894361 - Wasl protein_coding retained_intron MGP_C57BL6NJ_T0077008.1 MGP_C57BL6NJ_G0030934.1 mouse_genomes_project 6 22898972 22931251 - MGP_C57BL6NJ_P0077008 Wasl protein_coding protein_coding MGP_C57BL6NJ_T0077009.1 MGP_C57BL6NJ_G0030934.1 mouse_genomes_project 6 22904142 22931201 - Wasl protein_coding processed_transcript MGP_C57BL6NJ_T0077430.1 MGP_C57BL6NJ_G0031007.1 mouse_genomes_project 6 34234501 34277526 - MGP_C57BL6NJ_P0077430 Slc13a4 protein_coding protein_coding MGP_C57BL6NJ_T0077431.1 MGP_C57BL6NJ_G0031007.1 mouse_genomes_project 6 34248321 34256176 - Slc13a4 protein_coding retained_intron MGP_C57BL6NJ_T0077432.1 MGP_C57BL6NJ_G0031007.1 mouse_genomes_project 6 34254504 34277524 - Slc13a4 protein_coding retained_intron MGP_C57BL6NJ_T0015809.1 MGP_C57BL6NJ_G0013854.1 mouse_genomes_project 6 67464025 67465601 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008906.1 MGP_C57BL6NJ_G0007199.1 mouse_genomes_project 6 130926041 130927260 - 1700027F06Rik lincRNA lincRNA MGP_C57BL6NJ_T0011907.1 MGP_C57BL6NJ_G0009992.1 mouse_genomes_project 6 52623475 52623571 + Gm28032 misc_RNA misc_RNA MGP_C57BL6NJ_T0081556.1 MGP_C57BL6NJ_G0031942.1 mouse_genomes_project 6 156178687 156207943 + MGP_C57BL6NJ_P0081556 Klhl42 protein_coding protein_coding MGP_C57BL6NJ_T0081557.1 MGP_C57BL6NJ_G0031942.1 mouse_genomes_project 6 156198468 156203337 + Klhl42 protein_coding processed_transcript MGP_C57BL6NJ_T0081558.1 MGP_C57BL6NJ_G0031942.1 mouse_genomes_project 6 156203257 156205760 + MGP_C57BL6NJ_P0081558 Klhl42 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100538.1 MGP_C57BL6NJ_G0038584.1 mouse_genomes_project 6 101944921 101945084 - Gm23510 snRNA snRNA MGP_C57BL6NJ_T0002155.1 MGP_C57BL6NJ_G0002046.1 mouse_genomes_project 6 75413645 75414603 - TEC TEC MGP_C57BL6NJ_T0078419.1 MGP_C57BL6NJ_G0031288.1 mouse_genomes_project 6 73159736 73226218 + MGP_C57BL6NJ_P0078419 Eif2ak3 protein_coding protein_coding MGP_C57BL6NJ_T0078420.1 MGP_C57BL6NJ_G0031288.1 mouse_genomes_project 6 73159774 73184456 + MGP_C57BL6NJ_P0078420 Eif2ak3 protein_coding protein_coding MGP_C57BL6NJ_T0078421.1 MGP_C57BL6NJ_G0031288.1 mouse_genomes_project 6 73159777 73160841 + Eif2ak3 protein_coding retained_intron MGP_C57BL6NJ_T0078422.1 MGP_C57BL6NJ_G0031288.1 mouse_genomes_project 6 73198658 73214409 + Eif2ak3 protein_coding retained_intron MGP_C57BL6NJ_T0078423.1 MGP_C57BL6NJ_G0031288.1 mouse_genomes_project 6 73217736 73221231 + Eif2ak3 protein_coding retained_intron MGP_C57BL6NJ_T0002160.1 MGP_C57BL6NJ_G0002051.1 mouse_genomes_project 6 80285304 80289423 - TEC TEC MGP_C57BL6NJ_T0077661.1 MGP_C57BL6NJ_G0031074.1 mouse_genomes_project 6 41398892 41411558 + MGP_C57BL6NJ_P0077661 Sval2 protein_coding protein_coding MGP_C57BL6NJ_T0077662.1 MGP_C57BL6NJ_G0031074.1 mouse_genomes_project 6 41407383 41411517 + MGP_C57BL6NJ_P0077662 Sval2 protein_coding protein_coding MGP_C57BL6NJ_T0077663.1 MGP_C57BL6NJ_G0031074.1 mouse_genomes_project 6 41408936 41411517 + MGP_C57BL6NJ_P0077663 Sval2 protein_coding protein_coding MGP_C57BL6NJ_T0077664.1 MGP_C57BL6NJ_G0031074.1 mouse_genomes_project 6 41410484 41411434 + Sval2 protein_coding retained_intron MGP_C57BL6NJ_T0080909.1 MGP_C57BL6NJ_G0031777.1 mouse_genomes_project 6 136230465 136239268 - MGP_C57BL6NJ_P0080909 Clec2e protein_coding protein_coding MGP_C57BL6NJ_T0015693.1 MGP_C57BL6NJ_G0013738.1 mouse_genomes_project 6 26880927 26882179 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078376.1 MGP_C57BL6NJ_G0031277.1 mouse_genomes_project 6 68179736 68180623 - MGP_C57BL6NJ_P0078376 protein_coding protein_coding MGP_C57BL6NJ_T0015950.1 MGP_C57BL6NJ_G0013995.1 mouse_genomes_project 6 116089047 116089179 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005088.1 MGP_C57BL6NJ_G0004362.1 mouse_genomes_project 6 31838442 31843197 + Gm14540 antisense antisense MGP_C57BL6NJ_T0002111.1 MGP_C57BL6NJ_G0002002.1 mouse_genomes_project 6 45912181 45914136 + TEC TEC MGP_C57BL6NJ_T0080071.1 MGP_C57BL6NJ_G0031607.1 mouse_genomes_project 6 122228029 122233469 + MGP_C57BL6NJ_P0080071 Olfr211 protein_coding protein_coding MGP_C57BL6NJ_T0080072.1 MGP_C57BL6NJ_G0031607.1 mouse_genomes_project 6 122232539 122233469 + MGP_C57BL6NJ_P0080072 Olfr211 protein_coding protein_coding MGP_C57BL6NJ_T0101829.1 MGP_C57BL6NJ_G0039875.1 mouse_genomes_project 6 130300360 130300477 - Gm23079 snoRNA snoRNA MGP_C57BL6NJ_T0101799.1 MGP_C57BL6NJ_G0039845.1 mouse_genomes_project 6 69454893 69455031 - Gm22425 snoRNA snoRNA MGP_C57BL6NJ_T0080838.1 MGP_C57BL6NJ_G0031761.1 mouse_genomes_project 6 135413632 135448218 + MGP_C57BL6NJ_P0080838 Gm44596 protein_coding protein_coding MGP_C57BL6NJ_T0098883.1 MGP_C57BL6NJ_G0036947.1 mouse_genomes_project 6 3732838 3734017 - pseudogene pseudogene MGP_C57BL6NJ_T0002082.1 MGP_C57BL6NJ_G0001973.1 mouse_genomes_project 6 28836252 28838473 + TEC TEC MGP_C57BL6NJ_T0080550.1 MGP_C57BL6NJ_G0031703.1 mouse_genomes_project 6 131501185 131504752 - MGP_C57BL6NJ_P0080550 Tpi1 protein_coding protein_coding MGP_C57BL6NJ_T0080551.1 MGP_C57BL6NJ_G0031703.1 mouse_genomes_project 6 131501751 131502366 - Tpi1 protein_coding retained_intron MGP_C57BL6NJ_T0080552.1 MGP_C57BL6NJ_G0031703.1 mouse_genomes_project 6 131502928 131503320 - Tpi1 protein_coding retained_intron MGP_C57BL6NJ_T0080553.1 MGP_C57BL6NJ_G0031703.1 mouse_genomes_project 6 131503014 131504638 - Tpi1 protein_coding retained_intron MGP_C57BL6NJ_T0080554.1 MGP_C57BL6NJ_G0031703.1 mouse_genomes_project 6 131503943 131504634 - Tpi1 protein_coding retained_intron MGP_C57BL6NJ_T0015687.1 MGP_C57BL6NJ_G0013732.1 mouse_genomes_project 6 22383291 22385315 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016050.1 MGP_C57BL6NJ_G0014095.1 mouse_genomes_project 6 138989089 138990948 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000207.1 MGP_C57BL6NJ_G0000154.1 mouse_genomes_project 6 69641514 69641994 + MGP_C57BL6NJ_P0000207 Igkv11-125 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000208.1 MGP_C57BL6NJ_G0000154.1 mouse_genomes_project 6 69641514 69641994 + MGP_C57BL6NJ_P0000208 Igkv11-125 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077022.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24047364 24120986 - MGP_C57BL6NJ_P0077022 Pot1a protein_coding protein_coding MGP_C57BL6NJ_T0077023.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24048128 24049824 - Pot1a protein_coding retained_intron MGP_C57BL6NJ_T0077024.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24048208 24108798 - MGP_C57BL6NJ_P0077024 Pot1a protein_coding protein_coding MGP_C57BL6NJ_T0077025.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24053300 24120986 - Pot1a protein_coding retained_intron MGP_C57BL6NJ_T0077026.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24062210 24120955 - MGP_C57BL6NJ_P0077026 Pot1a protein_coding protein_coding MGP_C57BL6NJ_T0077027.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24084047 24120982 - Pot1a protein_coding processed_transcript MGP_C57BL6NJ_T0077028.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24103363 24121006 - Pot1a protein_coding retained_intron MGP_C57BL6NJ_T0077029.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24109316 24120976 - Pot1a protein_coding retained_intron MGP_C57BL6NJ_T0077030.1 MGP_C57BL6NJ_G0030941.1 mouse_genomes_project 6 24111106 24112179 - Pot1a protein_coding processed_transcript MGP_C57BL6NJ_T0079218.1 MGP_C57BL6NJ_G0031446.1 mouse_genomes_project 6 92289186 92322321 + MGP_C57BL6NJ_P0079218 Ruvbl1 protein_coding protein_coding MGP_C57BL6NJ_T0079219.1 MGP_C57BL6NJ_G0031446.1 mouse_genomes_project 6 92289504 92307130 + MGP_C57BL6NJ_P0079219 Ruvbl1 protein_coding protein_coding MGP_C57BL6NJ_T0078296.1 MGP_C57BL6NJ_G0031256.1 mouse_genomes_project 6 59823169 59825013 - MGP_C57BL6NJ_P0078296 Nap1l5 protein_coding protein_coding MGP_C57BL6NJ_T0078297.1 MGP_C57BL6NJ_G0031256.1 mouse_genomes_project 6 59823740 59824610 - MGP_C57BL6NJ_P0078297 Nap1l5 protein_coding protein_coding MGP_C57BL6NJ_T0099130.1 MGP_C57BL6NJ_G0037194.1 mouse_genomes_project 6 21849023 21849156 - Gm24217 rRNA rRNA MGP_C57BL6NJ_T0080993.1 MGP_C57BL6NJ_G0031809.1 mouse_genomes_project 6 138847788 138862400 - MGP_C57BL6NJ_P0080993 Styk1 protein_coding protein_coding MGP_C57BL6NJ_T0080994.1 MGP_C57BL6NJ_G0031809.1 mouse_genomes_project 6 138848779 138864959 - MGP_C57BL6NJ_P0080994 Styk1 protein_coding protein_coding MGP_C57BL6NJ_T0080995.1 MGP_C57BL6NJ_G0031809.1 mouse_genomes_project 6 138859764 138903336 - Styk1 protein_coding processed_transcript MGP_C57BL6NJ_T0080996.1 MGP_C57BL6NJ_G0031809.1 mouse_genomes_project 6 138886877 138903333 - Styk1 protein_coding processed_transcript MGP_C57BL6NJ_T0080997.1 MGP_C57BL6NJ_G0031809.1 mouse_genomes_project 6 138901715 138903336 - Styk1 protein_coding retained_intron MGP_C57BL6NJ_T0008805.1 MGP_C57BL6NJ_G0007117.1 mouse_genomes_project 6 73509888 73511155 + Gm44427 lincRNA lincRNA MGP_C57BL6NJ_T0002131.1 MGP_C57BL6NJ_G0002022.1 mouse_genomes_project 6 57529565 57531163 + TEC TEC MGP_C57BL6NJ_T0005251.1 MGP_C57BL6NJ_G0004476.1 mouse_genomes_project 6 134040660 134109393 + 9330179D12Rik antisense antisense MGP_C57BL6NJ_T0005252.1 MGP_C57BL6NJ_G0004476.1 mouse_genomes_project 6 134040897 134109685 + 9330179D12Rik antisense antisense MGP_C57BL6NJ_T0101798.1 MGP_C57BL6NJ_G0039844.1 mouse_genomes_project 6 61082635 61082764 - Gm22622 snoRNA snoRNA MGP_C57BL6NJ_T0076976.1 MGP_C57BL6NJ_G0030924.1 mouse_genomes_project 6 21438529 21441868 - MGP_C57BL6NJ_P0076976 Fezf1 protein_coding protein_coding MGP_C57BL6NJ_T0015990.1 MGP_C57BL6NJ_G0014035.1 mouse_genomes_project 6 128113079 128113211 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077931.1 MGP_C57BL6NJ_G0031153.1 mouse_genomes_project 6 49086651 49090434 + MGP_C57BL6NJ_P0077931 Doxl2 protein_coding protein_coding MGP_C57BL6NJ_T0077932.1 MGP_C57BL6NJ_G0031153.1 mouse_genomes_project 6 49086762 49090435 + MGP_C57BL6NJ_P0077932 Doxl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077933.1 MGP_C57BL6NJ_G0031153.1 mouse_genomes_project 6 49088922 49090432 + Doxl2 protein_coding retained_intron MGP_C57BL6NJ_T0005110.1 MGP_C57BL6NJ_G0004381.1 mouse_genomes_project 6 49098304 49111297 - 4930563H07Rik antisense antisense MGP_C57BL6NJ_T0016078.1 MGP_C57BL6NJ_G0014123.1 mouse_genomes_project 6 144779504 144779898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015982.1 MGP_C57BL6NJ_G0014027.1 mouse_genomes_project 6 126998795 127001104 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077785.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542478 47626280 - MGP_C57BL6NJ_P0077785 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077786.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542478 47555596 - MGP_C57BL6NJ_P0077786 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077787.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542478 47626280 - MGP_C57BL6NJ_P0077787 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077788.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542478 47626280 - MGP_C57BL6NJ_P0077788 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077789.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542658 47544456 - Ezh2 protein_coding retained_intron MGP_C57BL6NJ_T0077790.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47542880 47607185 - MGP_C57BL6NJ_P0077790 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077791.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47544349 47547465 - Ezh2 protein_coding retained_intron MGP_C57BL6NJ_T0077792.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47544969 47555570 - Ezh2 protein_coding retained_intron MGP_C57BL6NJ_T0077793.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47546081 47563554 - Ezh2 protein_coding retained_intron MGP_C57BL6NJ_T0077794.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47555703 47569432 - MGP_C57BL6NJ_P0077794 Ezh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077795.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47561676 47569432 - MGP_C57BL6NJ_P0077795 Ezh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077796.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47563453 47572821 - MGP_C57BL6NJ_P0077796 Ezh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077797.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47563506 47626308 - MGP_C57BL6NJ_P0077797 Ezh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077798.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47570056 47626591 - MGP_C57BL6NJ_P0077798 Ezh2 protein_coding protein_coding MGP_C57BL6NJ_T0077799.1 MGP_C57BL6NJ_G0031119.1 mouse_genomes_project 6 47574636 47607535 - Ezh2 protein_coding processed_transcript MGP_C57BL6NJ_T0101828.1 MGP_C57BL6NJ_G0039874.1 mouse_genomes_project 6 130225734 130225861 - Gm22724 snoRNA snoRNA MGP_C57BL6NJ_T0002224.1 MGP_C57BL6NJ_G0002115.1 mouse_genomes_project 6 95740480 95742423 - TEC TEC MGP_C57BL6NJ_T0078761.1 MGP_C57BL6NJ_G0031361.1 mouse_genomes_project 6 86412419 86416086 - MGP_C57BL6NJ_P0078761 Ino80b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078762.1 MGP_C57BL6NJ_G0031361.1 mouse_genomes_project 6 86412419 86416086 - MGP_C57BL6NJ_P0078762 Ino80b protein_coding protein_coding MGP_C57BL6NJ_T0078763.1 MGP_C57BL6NJ_G0031361.1 mouse_genomes_project 6 86412482 86415684 - MGP_C57BL6NJ_P0078763 Ino80b protein_coding protein_coding MGP_C57BL6NJ_T0078764.1 MGP_C57BL6NJ_G0031361.1 mouse_genomes_project 6 86415067 86415523 - Ino80b protein_coding retained_intron MGP_C57BL6NJ_T0005129.1 MGP_C57BL6NJ_G0004393.1 mouse_genomes_project 6 59885960 59893321 + Gm45060 antisense antisense MGP_C57BL6NJ_T0099141.1 MGP_C57BL6NJ_G0037205.1 mouse_genomes_project 6 148972653 148972757 + n-R5s168 rRNA rRNA MGP_C57BL6NJ_T0008717.1 MGP_C57BL6NJ_G0007056.1 mouse_genomes_project 6 29817143 29951226 - Lncpint lincRNA lincRNA MGP_C57BL6NJ_T0008719.1 MGP_C57BL6NJ_G0007056.1 mouse_genomes_project 6 29895733 29951185 - Lncpint lincRNA lincRNA MGP_C57BL6NJ_T0008720.1 MGP_C57BL6NJ_G0007056.1 mouse_genomes_project 6 29896686 29951172 - Lncpint lincRNA lincRNA MGP_C57BL6NJ_T0008721.1 MGP_C57BL6NJ_G0007056.1 mouse_genomes_project 6 29896734 29951098 - Lncpint lincRNA lincRNA MGP_C57BL6NJ_T0005130.1 MGP_C57BL6NJ_G0004394.1 mouse_genomes_project 6 59886741 59923069 + BB365896 antisense antisense MGP_C57BL6NJ_T0078608.1 MGP_C57BL6NJ_G0031324.1 mouse_genomes_project 6 75479123 75480363 - MGP_C57BL6NJ_P0078608 protein_coding protein_coding MGP_C57BL6NJ_T0078609.1 MGP_C57BL6NJ_G0031324.1 mouse_genomes_project 6 75479129 75480177 - MGP_C57BL6NJ_P0078609 protein_coding protein_coding MGP_C57BL6NJ_T0078610.1 MGP_C57BL6NJ_G0031324.1 mouse_genomes_project 6 75479137 75480623 - MGP_C57BL6NJ_P0078610 protein_coding protein_coding MGP_C57BL6NJ_T0078611.1 MGP_C57BL6NJ_G0031324.1 mouse_genomes_project 6 75479529 75480274 - MGP_C57BL6NJ_P0078611 protein_coding protein_coding MGP_C57BL6NJ_T0008914.1 MGP_C57BL6NJ_G0007207.1 mouse_genomes_project 6 135173814 135189390 - 9330102E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0016026.1 MGP_C57BL6NJ_G0014071.1 mouse_genomes_project 6 135586632 135587038 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078273.1 MGP_C57BL6NJ_G0031251.1 mouse_genomes_project 6 59160308 59161393 + MGP_C57BL6NJ_P0078273 Vmn1r28 protein_coding protein_coding MGP_C57BL6NJ_T0081003.1 MGP_C57BL6NJ_G0031811.1 mouse_genomes_project 6 139236283 139237373 - MGP_C57BL6NJ_P0081003 Tas2r130 protein_coding protein_coding MGP_C57BL6NJ_T0002100.1 MGP_C57BL6NJ_G0001991.1 mouse_genomes_project 6 44940711 44942924 + TEC TEC MGP_C57BL6NJ_T0005280.1 MGP_C57BL6NJ_G0004500.1 mouse_genomes_project 6 153433806 153455065 + Sox5os2 antisense antisense MGP_C57BL6NJ_T0080250.1 MGP_C57BL6NJ_G0031638.1 mouse_genomes_project 6 126217804 126260678 - B4galnt3 protein_coding processed_transcript MGP_C57BL6NJ_T0080251.1 MGP_C57BL6NJ_G0031638.1 mouse_genomes_project 6 126217825 126314881 - MGP_C57BL6NJ_P0080251 B4galnt3 protein_coding protein_coding MGP_C57BL6NJ_T0099276.1 MGP_C57BL6NJ_G0037340.1 mouse_genomes_project 6 147739219 147739386 - Gm25434 scaRNA scaRNA MGP_C57BL6NJ_T0103236.1 MGP_C57BL6NJ_G0041030.1 mouse_genomes_project 6 40886032 40886385 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081032.1 MGP_C57BL6NJ_G0031837.1 mouse_genomes_project 6 140777808 140778844 - MGP_C57BL6NJ_P0081032 Tas2r131 protein_coding protein_coding MGP_C57BL6NJ_T0015711.1 MGP_C57BL6NJ_G0013756.1 mouse_genomes_project 6 37580794 37581928 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005206.1 MGP_C57BL6NJ_G0004440.1 mouse_genomes_project 6 104254091 104260453 + Gm26748 antisense antisense MGP_C57BL6NJ_T0015752.1 MGP_C57BL6NJ_G0013797.1 mouse_genomes_project 6 49435935 49436500 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005281.1 MGP_C57BL6NJ_G0004501.1 mouse_genomes_project 6 153636319 153678804 + antisense antisense MGP_C57BL6NJ_T0005282.1 MGP_C57BL6NJ_G0004501.1 mouse_genomes_project 6 153654021 153678554 + antisense antisense MGP_C57BL6NJ_T0002307.1 MGP_C57BL6NJ_G0002197.1 mouse_genomes_project 6 145972732 145974331 - TEC TEC MGP_C57BL6NJ_T0103248.1 MGP_C57BL6NJ_G0041042.1 mouse_genomes_project 6 58055493 58055851 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081121.1 MGP_C57BL6NJ_G0031860.1 mouse_genomes_project 6 143453989 143455268 - MGP_C57BL6NJ_P0081121 Pbp2 protein_coding protein_coding MGP_C57BL6NJ_T0008806.1 MGP_C57BL6NJ_G0007118.1 mouse_genomes_project 6 73656832 73665937 + Gm1070 lincRNA lincRNA MGP_C57BL6NJ_T0077880.1 MGP_C57BL6NJ_G0031140.1 mouse_genomes_project 6 48715687 48727621 + MGP_C57BL6NJ_P0077880 Gimap8 protein_coding protein_coding MGP_C57BL6NJ_T0002159.1 MGP_C57BL6NJ_G0002050.1 mouse_genomes_project 6 80251519 80253717 - TEC TEC MGP_C57BL6NJ_T0018715.1 MGP_C57BL6NJ_G0016020.1 mouse_genomes_project 6 48954368 48970713 - Gm44764 processed_transcript lincRNA MGP_C57BL6NJ_T0018716.1 MGP_C57BL6NJ_G0016020.1 mouse_genomes_project 6 48969900 48970720 - Gm44764 processed_transcript retained_intron MGP_C57BL6NJ_T0101773.1 MGP_C57BL6NJ_G0039819.1 mouse_genomes_project 6 4921945 4922074 + Gm22276 snoRNA snoRNA MGP_C57BL6NJ_T0080910.1 MGP_C57BL6NJ_G0031778.1 mouse_genomes_project 6 136313468 136319389 + MGP_C57BL6NJ_P0080910 Clec2d protein_coding protein_coding MGP_C57BL6NJ_T0005795.1 MGP_C57BL6NJ_G0004875.1 mouse_genomes_project 6 121897397 121905977 - 9530062K07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0015906.1 MGP_C57BL6NJ_G0013951.1 mouse_genomes_project 6 98523650 98524041 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079008.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89665717 89738162 + Add2 protein_coding retained_intron MGP_C57BL6NJ_T0079009.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89665740 89765435 + MGP_C57BL6NJ_P0079009 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079010.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89665783 89750493 + MGP_C57BL6NJ_P0079010 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079011.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89692188 89734501 + MGP_C57BL6NJ_P0079011 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079012.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89719080 89760581 + MGP_C57BL6NJ_P0079012 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079013.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89719080 89750491 + MGP_C57BL6NJ_P0079013 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079014.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89719107 89760581 + MGP_C57BL6NJ_P0079014 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079015.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89723804 89759851 + MGP_C57BL6NJ_P0079015 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079016.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89723804 89749322 + MGP_C57BL6NJ_P0079016 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0079017.1 MGP_C57BL6NJ_G0031406.1 mouse_genomes_project 6 89726885 89759827 + MGP_C57BL6NJ_P0079017 Add2 protein_coding protein_coding MGP_C57BL6NJ_T0008856.1 MGP_C57BL6NJ_G0007157.1 mouse_genomes_project 6 94443886 94479421 + lincRNA lincRNA MGP_C57BL6NJ_T0081021.1 MGP_C57BL6NJ_G0031826.1 mouse_genomes_project 6 140536786 140537819 - MGP_C57BL6NJ_P0081021 Tas2r115 protein_coding protein_coding MGP_C57BL6NJ_T0008737.1 MGP_C57BL6NJ_G0007069.1 mouse_genomes_project 6 32849031 32858182 - Gm13853 lincRNA lincRNA MGP_C57BL6NJ_T0080555.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131505395 131519861 - MGP_C57BL6NJ_P0080555 Usp5 protein_coding protein_coding MGP_C57BL6NJ_T0080556.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131505414 131519812 - MGP_C57BL6NJ_P0080556 Usp5 protein_coding protein_coding MGP_C57BL6NJ_T0080557.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131505796 131509014 - Usp5 protein_coding retained_intron MGP_C57BL6NJ_T0080558.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131507622 131508270 - Usp5 protein_coding retained_intron MGP_C57BL6NJ_T0080559.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131512151 131513846 - Usp5 protein_coding retained_intron MGP_C57BL6NJ_T0080560.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131512995 131519785 - MGP_C57BL6NJ_P0080560 Usp5 protein_coding protein_coding MGP_C57BL6NJ_T0080561.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131513103 131514000 - Usp5 protein_coding retained_intron MGP_C57BL6NJ_T0080562.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131513219 131514577 - Usp5 protein_coding retained_intron MGP_C57BL6NJ_T0080563.1 MGP_C57BL6NJ_G0031704.1 mouse_genomes_project 6 131514512 131519272 - MGP_C57BL6NJ_P0080563 Usp5 protein_coding protein_coding MGP_C57BL6NJ_T0080047.1 MGP_C57BL6NJ_G0031604.1 mouse_genomes_project 6 122003412 122054203 + MGP_C57BL6NJ_P0080047 Zfand4 protein_coding protein_coding MGP_C57BL6NJ_T0103298.1 MGP_C57BL6NJ_G0041091.1 mouse_genomes_project 6 138694492 138697324 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000245.1 MGP_C57BL6NJ_G0000182.1 mouse_genomes_project 6 71163508 71164042 - MGP_C57BL6NJ_P0000245 Igkv4-78 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0005148.1 MGP_C57BL6NJ_G0004409.1 mouse_genomes_project 6 86397266 86399713 - Ccdc142os antisense antisense MGP_C57BL6NJ_T0005149.1 MGP_C57BL6NJ_G0004409.1 mouse_genomes_project 6 86397277 86399712 - Ccdc142os antisense antisense MGP_C57BL6NJ_T0005150.1 MGP_C57BL6NJ_G0004409.1 mouse_genomes_project 6 86397525 86399646 - Ccdc142os antisense antisense MGP_C57BL6NJ_T0005151.1 MGP_C57BL6NJ_G0004409.1 mouse_genomes_project 6 86398405 86399713 - Ccdc142os antisense antisense MGP_C57BL6NJ_T0008895.1 MGP_C57BL6NJ_G0007188.1 mouse_genomes_project 6 123368577 123398768 - Gm45083 lincRNA lincRNA MGP_C57BL6NJ_T0101790.1 MGP_C57BL6NJ_G0039836.1 mouse_genomes_project 6 50767068 50767199 - Gm26289 snoRNA snoRNA MGP_C57BL6NJ_T0016034.1 MGP_C57BL6NJ_G0014079.1 mouse_genomes_project 6 136909913 136910488 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008881.1 MGP_C57BL6NJ_G0007176.1 mouse_genomes_project 6 112283306 112387286 - Gm44398 lincRNA lincRNA MGP_C57BL6NJ_T0002182.1 MGP_C57BL6NJ_G0002073.1 mouse_genomes_project 6 87258296 87260519 + TEC TEC MGP_C57BL6NJ_T0077883.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757579 48764409 + MGP_C57BL6NJ_P0077883 Gimap4 protein_coding protein_coding MGP_C57BL6NJ_T0077884.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757608 48765091 + MGP_C57BL6NJ_P0077884 Gimap4 protein_coding protein_coding MGP_C57BL6NJ_T0077885.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757608 48765091 + MGP_C57BL6NJ_P0077885 Gimap4 protein_coding protein_coding MGP_C57BL6NJ_T0077886.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757611 48764908 + MGP_C57BL6NJ_P0077886 Gimap4 protein_coding protein_coding MGP_C57BL6NJ_T0077887.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757611 48765088 + MGP_C57BL6NJ_P0077887 Gimap4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077888.1 MGP_C57BL6NJ_G0031142.1 mouse_genomes_project 6 48757612 48765091 + MGP_C57BL6NJ_P0077888 Gimap4 protein_coding protein_coding MGP_C57BL6NJ_T0018763.1 MGP_C57BL6NJ_G0016035.1 mouse_genomes_project 6 113842796 113845329 + Gm17055 processed_transcript lincRNA MGP_C57BL6NJ_T0018764.1 MGP_C57BL6NJ_G0016035.1 mouse_genomes_project 6 113842924 113845449 + Gm17055 processed_transcript retained_intron MGP_C57BL6NJ_T0008855.1 MGP_C57BL6NJ_G0007156.1 mouse_genomes_project 6 94435959 94437180 + Gm44421 lincRNA lincRNA MGP_C57BL6NJ_T0005080.1 MGP_C57BL6NJ_G0004355.1 mouse_genomes_project 6 28086571 28088520 + Gm26627 antisense antisense MGP_C57BL6NJ_T0080088.1 MGP_C57BL6NJ_G0031614.1 mouse_genomes_project 6 122451161 122473833 - MGP_C57BL6NJ_P0080088 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080089.1 MGP_C57BL6NJ_G0031614.1 mouse_genomes_project 6 122451384 122473985 - MGP_C57BL6NJ_P0080089 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079103.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727273 90748391 + MGP_C57BL6NJ_P0079103 Nfu1 protein_coding protein_coding MGP_C57BL6NJ_T0079104.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727873 90733749 + Nfu1 protein_coding retained_intron MGP_C57BL6NJ_T0079105.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727873 90748384 + MGP_C57BL6NJ_P0079105 Nfu1 protein_coding protein_coding MGP_C57BL6NJ_T0079106.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727873 90748389 + MGP_C57BL6NJ_P0079106 Nfu1 protein_coding protein_coding MGP_C57BL6NJ_T0079107.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727917 90730425 + Nfu1 protein_coding retained_intron MGP_C57BL6NJ_T0079108.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90727926 90731528 + Nfu1 protein_coding retained_intron MGP_C57BL6NJ_T0079109.1 MGP_C57BL6NJ_G0031421.1 mouse_genomes_project 6 90744940 90748391 + Nfu1 protein_coding retained_intron MGP_C57BL6NJ_T0005061.1 MGP_C57BL6NJ_G0004343.1 mouse_genomes_project 6 2904793 2920412 - 1700019G24Rik antisense antisense MGP_C57BL6NJ_T0080477.1 MGP_C57BL6NJ_G0031692.1 mouse_genomes_project 6 131139416 131295925 - MGP_C57BL6NJ_P0080477 protein_coding protein_coding MGP_C57BL6NJ_T0080478.1 MGP_C57BL6NJ_G0031692.1 mouse_genomes_project 6 131139419 131295963 - MGP_C57BL6NJ_P0080478 protein_coding protein_coding MGP_C57BL6NJ_T0080479.1 MGP_C57BL6NJ_G0031692.1 mouse_genomes_project 6 131156886 131295907 - MGP_C57BL6NJ_P0080479 protein_coding protein_coding MGP_C57BL6NJ_T0080480.1 MGP_C57BL6NJ_G0031692.1 mouse_genomes_project 6 131157504 131295913 - MGP_C57BL6NJ_P0080480 protein_coding protein_coding MGP_C57BL6NJ_T0078477.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241455 74266662 + Immt protein_coding retained_intron MGP_C57BL6NJ_T0078478.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241456 74272579 + MGP_C57BL6NJ_P0078478 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078479.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241486 74286538 + MGP_C57BL6NJ_P0078479 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078480.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241489 74286211 + MGP_C57BL6NJ_P0078480 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078481.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241494 74286531 + MGP_C57BL6NJ_P0078481 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078482.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241508 74288666 + MGP_C57BL6NJ_P0078482 Immt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078483.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241535 74268431 + MGP_C57BL6NJ_P0078483 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078484.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74241547 74286542 + MGP_C57BL6NJ_P0078484 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078485.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74274833 74278304 + Immt protein_coding retained_intron MGP_C57BL6NJ_T0078486.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74281309 74284359 + Immt protein_coding retained_intron MGP_C57BL6NJ_T0078487.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74282413 74286535 + Immt protein_coding retained_intron MGP_C57BL6NJ_T0078488.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74282777 74285813 + MGP_C57BL6NJ_P0078488 Immt protein_coding protein_coding MGP_C57BL6NJ_T0078489.1 MGP_C57BL6NJ_G0031303.1 mouse_genomes_project 6 74282816 74288669 + MGP_C57BL6NJ_P0078489 Immt protein_coding protein_coding MGP_C57BL6NJ_T0079598.1 MGP_C57BL6NJ_G0031524.1 mouse_genomes_project 6 104799446 104860688 - MGP_C57BL6NJ_P0079598 Rybp protein_coding protein_coding MGP_C57BL6NJ_T0079599.1 MGP_C57BL6NJ_G0031524.1 mouse_genomes_project 6 104802270 104803391 - Rybp protein_coding retained_intron MGP_C57BL6NJ_T0079600.1 MGP_C57BL6NJ_G0031524.1 mouse_genomes_project 6 104803353 104858711 - Rybp protein_coding retained_intron MGP_C57BL6NJ_T0015781.1 MGP_C57BL6NJ_G0013826.1 mouse_genomes_project 6 60938317 60939275 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100530.1 MGP_C57BL6NJ_G0038576.1 mouse_genomes_project 6 78980575 78980736 - Gm22283 snRNA snRNA MGP_C57BL6NJ_T0101795.1 MGP_C57BL6NJ_G0039841.1 mouse_genomes_project 6 57313775 57313907 - Gm22493 snoRNA snoRNA MGP_C57BL6NJ_T0015946.1 MGP_C57BL6NJ_G0013991.1 mouse_genomes_project 6 114689870 114690495 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077533.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38634378 38679309 - MGP_C57BL6NJ_P0077533 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077534.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38635590 38679306 - MGP_C57BL6NJ_P0077534 Slc37a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077535.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38635591 38647241 - Slc37a3 protein_coding processed_transcript MGP_C57BL6NJ_T0077536.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38635594 38674564 - MGP_C57BL6NJ_P0077536 Slc37a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077537.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38636211 38646625 - Slc37a3 protein_coding processed_transcript MGP_C57BL6NJ_T0077538.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38643156 38646597 - Slc37a3 protein_coding retained_intron MGP_C57BL6NJ_T0077539.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38654231 38679293 - MGP_C57BL6NJ_P0077539 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077540.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38656713 38679306 - MGP_C57BL6NJ_P0077540 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077541.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38659117 38679281 - MGP_C57BL6NJ_P0077541 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077542.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38659142 38679270 - MGP_C57BL6NJ_P0077542 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077543.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38659144 38679296 - MGP_C57BL6NJ_P0077543 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077544.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38667203 38679291 - MGP_C57BL6NJ_P0077544 Slc37a3 protein_coding protein_coding MGP_C57BL6NJ_T0077545.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38667973 38679273 - Slc37a3 protein_coding processed_transcript MGP_C57BL6NJ_T0077546.1 MGP_C57BL6NJ_G0031032.1 mouse_genomes_project 6 38667982 38679252 - Slc37a3 protein_coding processed_transcript MGP_C57BL6NJ_T0005104.1 MGP_C57BL6NJ_G0004376.1 mouse_genomes_project 6 41862619 41890826 - Gm44284 antisense antisense MGP_C57BL6NJ_T0008673.1 MGP_C57BL6NJ_G0007028.1 mouse_genomes_project 6 3204270 3237164 + Gm20619 lincRNA lincRNA MGP_C57BL6NJ_T0008674.1 MGP_C57BL6NJ_G0007028.1 mouse_genomes_project 6 3204298 3330911 + Gm20619 lincRNA lincRNA MGP_C57BL6NJ_T0008675.1 MGP_C57BL6NJ_G0007028.1 mouse_genomes_project 6 3204301 3348656 + Gm20619 lincRNA lincRNA MGP_C57BL6NJ_T0008676.1 MGP_C57BL6NJ_G0007028.1 mouse_genomes_project 6 3204329 3237160 + Gm20619 lincRNA lincRNA MGP_C57BL6NJ_T0008677.1 MGP_C57BL6NJ_G0007028.1 mouse_genomes_project 6 3254767 3330706 + Gm20619 lincRNA lincRNA MGP_C57BL6NJ_T0002098.1 MGP_C57BL6NJ_G0001989.1 mouse_genomes_project 6 44877505 44878734 + TEC TEC MGP_C57BL6NJ_T0002053.1 MGP_C57BL6NJ_G0001944.1 mouse_genomes_project 6 1810706 1811942 + TEC TEC MGP_C57BL6NJ_T0002141.1 MGP_C57BL6NJ_G0002032.1 mouse_genomes_project 6 73639824 73642679 + TEC TEC MGP_C57BL6NJ_T0011910.1 MGP_C57BL6NJ_G0009995.1 mouse_genomes_project 6 52624887 52625120 + Gm27817 misc_RNA misc_RNA MGP_C57BL6NJ_T0102299.1 MGP_C57BL6NJ_G0040271.1 mouse_genomes_project 6 94047085 94175660 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0076872.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15165869 15287061 + MGP_C57BL6NJ_P0076872 Met protein_coding protein_coding MGP_C57BL6NJ_T0076873.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15165896 15199896 + MGP_C57BL6NJ_P0076873 Met protein_coding protein_coding MGP_C57BL6NJ_T0076874.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15166107 15285310 + MGP_C57BL6NJ_P0076874 Met protein_coding protein_coding MGP_C57BL6NJ_T0076875.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15166176 15252088 + Met protein_coding retained_intron MGP_C57BL6NJ_T0076876.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15199389 15284904 + MGP_C57BL6NJ_P0076876 Met protein_coding protein_coding MGP_C57BL6NJ_T0076877.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15246276 15257886 + MGP_C57BL6NJ_P0076877 Met protein_coding protein_coding MGP_C57BL6NJ_T0076878.1 MGP_C57BL6NJ_G0030907.1 mouse_genomes_project 6 15257648 15264944 + MGP_C57BL6NJ_P0076878 Met protein_coding protein_coding MGP_C57BL6NJ_T0078374.1 MGP_C57BL6NJ_G0031275.1 mouse_genomes_project 6 68179693 68181974 - MGP_C57BL6NJ_P0078374 Vmn1r34 protein_coding protein_coding MGP_C57BL6NJ_T0008684.1 MGP_C57BL6NJ_G0007033.1 mouse_genomes_project 6 4339889 4344735 + Gm19272 lincRNA lincRNA MGP_C57BL6NJ_T0008685.1 MGP_C57BL6NJ_G0007033.1 mouse_genomes_project 6 4339889 4347737 + Gm19272 lincRNA lincRNA MGP_C57BL6NJ_T0080967.1 MGP_C57BL6NJ_G0031797.1 mouse_genomes_project 6 137019147 137051674 - MGP_C57BL6NJ_P0080967 Gm156 protein_coding protein_coding MGP_C57BL6NJ_T0080968.1 MGP_C57BL6NJ_G0031797.1 mouse_genomes_project 6 137019226 137041118 - MGP_C57BL6NJ_P0080968 Gm156 protein_coding protein_coding MGP_C57BL6NJ_T0100564.1 MGP_C57BL6NJ_G0038610.1 mouse_genomes_project 6 158309084 158309188 - Gm23462 snRNA snRNA MGP_C57BL6NJ_T0077054.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26966962 26973775 - MGP_C57BL6NJ_P0077054 Pax4 protein_coding protein_coding MGP_C57BL6NJ_T0077055.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26966962 26973877 - MGP_C57BL6NJ_P0077055 Pax4 protein_coding protein_coding MGP_C57BL6NJ_T0077056.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26966967 26973775 - MGP_C57BL6NJ_P0077056 Pax4 protein_coding protein_coding MGP_C57BL6NJ_T0077057.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26967003 26971704 - MGP_C57BL6NJ_P0077057 Pax4 protein_coding protein_coding MGP_C57BL6NJ_T0077058.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26968413 26970899 - Pax4 protein_coding retained_intron MGP_C57BL6NJ_T0077059.1 MGP_C57BL6NJ_G0030947.1 mouse_genomes_project 6 26969298 26971704 - Pax4 protein_coding retained_intron MGP_C57BL6NJ_T0080845.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135450186 135466989 - MGP_C57BL6NJ_P0080845 Itfg2 protein_coding protein_coding MGP_C57BL6NJ_T0080846.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135450240 135450933 - MGP_C57BL6NJ_P0080846 Itfg2 protein_coding protein_coding MGP_C57BL6NJ_T0080847.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135450275 135466976 - MGP_C57BL6NJ_P0080847 Itfg2 protein_coding protein_coding MGP_C57BL6NJ_T0080848.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135450857 135466927 - MGP_C57BL6NJ_P0080848 Itfg2 protein_coding protein_coding MGP_C57BL6NJ_T0080849.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135452138 135454906 - Itfg2 protein_coding retained_intron MGP_C57BL6NJ_T0080850.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135453559 135466970 - MGP_C57BL6NJ_P0080850 Itfg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080851.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135454192 135466971 - MGP_C57BL6NJ_P0080851 Itfg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080852.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135456158 135466988 - Itfg2 protein_coding retained_intron MGP_C57BL6NJ_T0080853.1 MGP_C57BL6NJ_G0031763.1 mouse_genomes_project 6 135464940 135466976 - Itfg2 protein_coding retained_intron MGP_C57BL6NJ_T0008957.1 MGP_C57BL6NJ_G0007235.1 mouse_genomes_project 6 155737564 155745792 + 4930479D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0000258.1 MGP_C57BL6NJ_G0000193.1 mouse_genomes_project 6 71909113 71910039 - MGP_C57BL6NJ_P0000258 Igkv12-44 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0080178.1 MGP_C57BL6NJ_G0031630.1 mouse_genomes_project 6 125221185 125236819 - MGP_C57BL6NJ_P0080178 Lrtm2 protein_coding protein_coding MGP_C57BL6NJ_T0080179.1 MGP_C57BL6NJ_G0031630.1 mouse_genomes_project 6 125221185 125235257 - MGP_C57BL6NJ_P0080179 Lrtm2 protein_coding protein_coding MGP_C57BL6NJ_T0080180.1 MGP_C57BL6NJ_G0031630.1 mouse_genomes_project 6 125221185 125236810 - MGP_C57BL6NJ_P0080180 Lrtm2 protein_coding protein_coding MGP_C57BL6NJ_T0080181.1 MGP_C57BL6NJ_G0031630.1 mouse_genomes_project 6 125229701 125235257 - MGP_C57BL6NJ_P0080181 Lrtm2 protein_coding protein_coding MGP_C57BL6NJ_T0005109.1 MGP_C57BL6NJ_G0004380.1 mouse_genomes_project 6 48682338 48690723 - Gm44119 antisense antisense MGP_C57BL6NJ_T0016038.1 MGP_C57BL6NJ_G0014083.1 mouse_genomes_project 6 137978116 137978237 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101777.1 MGP_C57BL6NJ_G0039823.1 mouse_genomes_project 6 19009411 19009542 - Gm23960 snoRNA snoRNA MGP_C57BL6NJ_T0015833.1 MGP_C57BL6NJ_G0013878.1 mouse_genomes_project 6 69440704 69441783 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002263.1 MGP_C57BL6NJ_G0002154.1 mouse_genomes_project 6 121248551 121248961 + TEC TEC MGP_C57BL6NJ_T0008862.1 MGP_C57BL6NJ_G0007162.1 mouse_genomes_project 6 99148557 99155822 + 4930511E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0000234.1 MGP_C57BL6NJ_G0000174.1 mouse_genomes_project 6 70707329 70707876 - MGP_C57BL6NJ_P0000234 Igkv4-91 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0079085.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90428234 90461506 - MGP_C57BL6NJ_P0079085 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079086.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90428235 90493166 - MGP_C57BL6NJ_P0079086 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079087.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90428241 90461420 - MGP_C57BL6NJ_P0079087 Anxa4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079088.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90429049 90436468 - Anxa4 protein_coding retained_intron MGP_C57BL6NJ_T0079089.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90429122 90453286 - MGP_C57BL6NJ_P0079089 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079090.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90433318 90461403 - MGP_C57BL6NJ_P0079090 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079091.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90433325 90493146 - MGP_C57BL6NJ_P0079091 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079092.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90434530 90493146 - MGP_C57BL6NJ_P0079092 Anxa4 protein_coding protein_coding MGP_C57BL6NJ_T0079093.1 MGP_C57BL6NJ_G0031419.1 mouse_genomes_project 6 90440165 90461506 - Anxa4 protein_coding retained_intron MGP_C57BL6NJ_T0002290.1 MGP_C57BL6NJ_G0002180.1 mouse_genomes_project 6 135415110 135415762 + TEC TEC MGP_C57BL6NJ_T0101793.1 MGP_C57BL6NJ_G0039839.1 mouse_genomes_project 6 55573155 55573284 + Gm24230 snoRNA snoRNA MGP_C57BL6NJ_T0077601.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895631 39908999 + MGP_C57BL6NJ_P0077601 Ssbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077602.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895694 39902873 + MGP_C57BL6NJ_P0077602 Ssbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077603.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895732 39898569 + Ssbp1 protein_coding retained_intron MGP_C57BL6NJ_T0077604.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895747 39905294 + MGP_C57BL6NJ_P0077604 Ssbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077605.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895754 39905291 + MGP_C57BL6NJ_P0077605 Ssbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077606.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39895805 39900791 + MGP_C57BL6NJ_P0077606 Ssbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077607.1 MGP_C57BL6NJ_G0031045.1 mouse_genomes_project 6 39900758 39901736 + Ssbp1 protein_coding retained_intron MGP_C57BL6NJ_T0103284.1 MGP_C57BL6NJ_G0041078.1 mouse_genomes_project 6 130656169 130738158 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005785.1 MGP_C57BL6NJ_G0004870.1 mouse_genomes_project 6 62317624 62319856 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005786.1 MGP_C57BL6NJ_G0004870.1 mouse_genomes_project 6 62319313 62325594 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005787.1 MGP_C57BL6NJ_G0004870.1 mouse_genomes_project 6 62321344 62326134 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0076966.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21030631 21220884 + MGP_C57BL6NJ_P0076966 Ptprz1 protein_coding protein_coding MGP_C57BL6NJ_T0076967.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21030839 21168258 + MGP_C57BL6NJ_P0076967 Ptprz1 protein_coding protein_coding MGP_C57BL6NJ_T0076968.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21030894 21220585 + MGP_C57BL6NJ_P0076968 Ptprz1 protein_coding protein_coding MGP_C57BL6NJ_T0076969.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21133997 21134432 + Ptprz1 protein_coding retained_intron MGP_C57BL6NJ_T0076970.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21148823 21162977 + Ptprz1 protein_coding retained_intron MGP_C57BL6NJ_T0076971.1 MGP_C57BL6NJ_G0030922.1 mouse_genomes_project 6 21216248 21219480 + Ptprz1 protein_coding retained_intron MGP_C57BL6NJ_T0081004.1 MGP_C57BL6NJ_G0031812.1 mouse_genomes_project 6 139265568 139266600 - MGP_C57BL6NJ_P0081004 Tas2r107 protein_coding protein_coding MGP_C57BL6NJ_T0005254.1 MGP_C57BL6NJ_G0004478.1 mouse_genomes_project 6 134915981 134928218 - Gm15870 antisense antisense MGP_C57BL6NJ_T0078599.1 MGP_C57BL6NJ_G0031322.1 mouse_genomes_project 6 75110307 75279575 - MGP_C57BL6NJ_P0078599 Tcf7l1 protein_coding protein_coding MGP_C57BL6NJ_T0078600.1 MGP_C57BL6NJ_G0031322.1 mouse_genomes_project 6 75111202 75279273 - MGP_C57BL6NJ_P0078600 Tcf7l1 protein_coding protein_coding MGP_C57BL6NJ_T0078601.1 MGP_C57BL6NJ_G0031322.1 mouse_genomes_project 6 75111521 75114103 - Tcf7l1 protein_coding processed_transcript MGP_C57BL6NJ_T0078602.1 MGP_C57BL6NJ_G0031322.1 mouse_genomes_project 6 75116814 75278919 - MGP_C57BL6NJ_P0078602 Tcf7l1 protein_coding protein_coding MGP_C57BL6NJ_T0078603.1 MGP_C57BL6NJ_G0031322.1 mouse_genomes_project 6 75133323 75156891 - Tcf7l1 protein_coding processed_transcript MGP_C57BL6NJ_T0076714.1 MGP_C57BL6NJ_G0030875.1 mouse_genomes_project 6 2981800 3173188 - MGP_C57BL6NJ_P0076714 Slc25a13 protein_coding protein_coding MGP_C57BL6NJ_T0076715.1 MGP_C57BL6NJ_G0030875.1 mouse_genomes_project 6 2981801 3173243 - MGP_C57BL6NJ_P0076715 Slc25a13 protein_coding protein_coding MGP_C57BL6NJ_T0076716.1 MGP_C57BL6NJ_G0030875.1 mouse_genomes_project 6 3008628 3035559 - Slc25a13 protein_coding processed_transcript MGP_C57BL6NJ_T0076717.1 MGP_C57BL6NJ_G0030875.1 mouse_genomes_project 6 3056737 3121516 - Slc25a13 protein_coding processed_transcript MGP_C57BL6NJ_T0076718.1 MGP_C57BL6NJ_G0030875.1 mouse_genomes_project 6 3076265 3141532 - Slc25a13 protein_coding retained_intron MGP_C57BL6NJ_T0079018.1 MGP_C57BL6NJ_G0031407.1 mouse_genomes_project 6 89841546 89923005 + MGP_C57BL6NJ_P0079018 Tgfa protein_coding protein_coding MGP_C57BL6NJ_T0079019.1 MGP_C57BL6NJ_G0031407.1 mouse_genomes_project 6 89841574 89856192 + Tgfa protein_coding processed_transcript MGP_C57BL6NJ_T0079020.1 MGP_C57BL6NJ_G0031407.1 mouse_genomes_project 6 89841713 89919315 + MGP_C57BL6NJ_P0079020 Tgfa protein_coding protein_coding MGP_C57BL6NJ_T0079021.1 MGP_C57BL6NJ_G0031407.1 mouse_genomes_project 6 89857869 89919505 + Tgfa protein_coding processed_transcript MGP_C57BL6NJ_T0080812.1 MGP_C57BL6NJ_G0031755.1 mouse_genomes_project 6 135237426 135239153 - MGP_C57BL6NJ_P0080812 protein_coding protein_coding MGP_C57BL6NJ_T0002884.1 MGP_C57BL6NJ_G0002738.1 mouse_genomes_project 6 40718459 40718723 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0076775.1 MGP_C57BL6NJ_G0030890.1 mouse_genomes_project 6 6066401 6070401 + Nxph1 protein_coding processed_transcript MGP_C57BL6NJ_T0076776.1 MGP_C57BL6NJ_G0030890.1 mouse_genomes_project 6 6066584 6389983 + MGP_C57BL6NJ_P0076776 Nxph1 protein_coding protein_coding MGP_C57BL6NJ_T0076777.1 MGP_C57BL6NJ_G0030890.1 mouse_genomes_project 6 6067646 6389981 + MGP_C57BL6NJ_P0076777 Nxph1 protein_coding protein_coding MGP_C57BL6NJ_T0078067.1 MGP_C57BL6NJ_G0031188.1 mouse_genomes_project 6 52961233 53063069 - MGP_C57BL6NJ_P0078067 Hibadh protein_coding protein_coding MGP_C57BL6NJ_T0078068.1 MGP_C57BL6NJ_G0031188.1 mouse_genomes_project 6 52961701 53050693 - Hibadh protein_coding retained_intron MGP_C57BL6NJ_T0078069.1 MGP_C57BL6NJ_G0031188.1 mouse_genomes_project 6 52963857 52973669 - Hibadh protein_coding retained_intron MGP_C57BL6NJ_T0078070.1 MGP_C57BL6NJ_G0031188.1 mouse_genomes_project 6 52971167 52973271 - Hibadh protein_coding retained_intron MGP_C57BL6NJ_T0078071.1 MGP_C57BL6NJ_G0031188.1 mouse_genomes_project 6 53054685 53062995 - Hibadh protein_coding retained_intron MGP_C57BL6NJ_T0008940.1 MGP_C57BL6NJ_G0007223.1 mouse_genomes_project 6 149690798 149775785 + Gm30524 lincRNA lincRNA MGP_C57BL6NJ_T0008941.1 MGP_C57BL6NJ_G0007223.1 mouse_genomes_project 6 149690824 149774085 + Gm30524 lincRNA lincRNA MGP_C57BL6NJ_T0080442.1 MGP_C57BL6NJ_G0031681.1 mouse_genomes_project 6 129742724 129755537 + MGP_C57BL6NJ_P0080442 Clec4d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080443.1 MGP_C57BL6NJ_G0031681.1 mouse_genomes_project 6 129742730 129755879 + MGP_C57BL6NJ_P0080443 Clec4d protein_coding protein_coding MGP_C57BL6NJ_T0080444.1 MGP_C57BL6NJ_G0031681.1 mouse_genomes_project 6 129748335 129755326 + Clec4d protein_coding retained_intron MGP_C57BL6NJ_T0015658.1 MGP_C57BL6NJ_G0013703.1 mouse_genomes_project 6 13869863 13870110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008913.1 MGP_C57BL6NJ_G0007206.1 mouse_genomes_project 6 134851266 134854950 - Gm42810 lincRNA lincRNA MGP_C57BL6NJ_T0099227.1 MGP_C57BL6NJ_G0037291.1 mouse_genomes_project 6 71333773 71334100 - Rprl1 ribozyme ribozyme MGP_C57BL6NJ_T0015727.1 MGP_C57BL6NJ_G0013772.1 mouse_genomes_project 6 43009522 43011270 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005239.1 MGP_C57BL6NJ_G0004465.1 mouse_genomes_project 6 131084884 131087090 - Gm44096 antisense antisense MGP_C57BL6NJ_T0000450.1 MGP_C57BL6NJ_G0000369.1 mouse_genomes_project 6 71808519 71808914 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0080872.1 MGP_C57BL6NJ_G0031768.1 mouse_genomes_project 6 135737520 135754092 + MGP_C57BL6NJ_P0080872 Clec2h protein_coding protein_coding MGP_C57BL6NJ_T0080873.1 MGP_C57BL6NJ_G0031768.1 mouse_genomes_project 6 135737521 135751694 + MGP_C57BL6NJ_P0080873 Clec2h protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080874.1 MGP_C57BL6NJ_G0031768.1 mouse_genomes_project 6 135737522 135751485 + MGP_C57BL6NJ_P0080874 Clec2h protein_coding protein_coding MGP_C57BL6NJ_T0080875.1 MGP_C57BL6NJ_G0031768.1 mouse_genomes_project 6 135737526 135751687 + Clec2h protein_coding retained_intron MGP_C57BL6NJ_T0002280.1 MGP_C57BL6NJ_G0002170.1 mouse_genomes_project 6 133385559 133386089 - TEC TEC MGP_C57BL6NJ_T0008670.1 MGP_C57BL6NJ_G0007027.1 mouse_genomes_project 6 1657433 1657813 - Gm20714 lincRNA lincRNA MGP_C57BL6NJ_T0008671.1 MGP_C57BL6NJ_G0007027.1 mouse_genomes_project 6 1657433 1665946 - Gm20714 lincRNA lincRNA MGP_C57BL6NJ_T0008672.1 MGP_C57BL6NJ_G0007027.1 mouse_genomes_project 6 1657435 1663105 - Gm20714 lincRNA lincRNA MGP_C57BL6NJ_T0103266.1 MGP_C57BL6NJ_G0041060.1 mouse_genomes_project 6 72716244 72716392 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077159.1 MGP_C57BL6NJ_G0030966.1 mouse_genomes_project 6 28295453 28321008 + MGP_C57BL6NJ_P0077159 Tspan33 protein_coding protein_coding MGP_C57BL6NJ_T0077160.1 MGP_C57BL6NJ_G0030966.1 mouse_genomes_project 6 28295465 28321006 + MGP_C57BL6NJ_P0077160 Tspan33 protein_coding protein_coding MGP_C57BL6NJ_T0077161.1 MGP_C57BL6NJ_G0030966.1 mouse_genomes_project 6 28310401 28317196 + Tspan33 protein_coding retained_intron MGP_C57BL6NJ_T0077560.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38914521 38929179 + MGP_C57BL6NJ_P0077560 Adck2 protein_coding protein_coding MGP_C57BL6NJ_T0077561.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38914607 38924478 + MGP_C57BL6NJ_P0077561 Adck2 protein_coding protein_coding MGP_C57BL6NJ_T0077562.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38914612 38928162 + MGP_C57BL6NJ_P0077562 Adck2 protein_coding protein_coding MGP_C57BL6NJ_T0077563.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38915632 38920623 + Adck2 protein_coding retained_intron MGP_C57BL6NJ_T0077564.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38917045 38922665 + MGP_C57BL6NJ_P0077564 Adck2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077565.1 MGP_C57BL6NJ_G0031036.1 mouse_genomes_project 6 38924360 38926348 + Adck2 protein_coding retained_intron MGP_C57BL6NJ_T0015785.1 MGP_C57BL6NJ_G0013830.1 mouse_genomes_project 6 62568683 62569107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005288.1 MGP_C57BL6NJ_G0004507.1 mouse_genomes_project 6 154481429 154483684 + Gm15499 antisense antisense MGP_C57BL6NJ_T0078569.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74987696 74989343 - Sh2d6 protein_coding processed_transcript MGP_C57BL6NJ_T0078570.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74987706 74995578 - MGP_C57BL6NJ_P0078570 Sh2d6 protein_coding protein_coding MGP_C57BL6NJ_T0078571.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74987708 74995667 - MGP_C57BL6NJ_P0078571 Sh2d6 protein_coding protein_coding MGP_C57BL6NJ_T0078572.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74987977 74994922 - MGP_C57BL6NJ_P0078572 Sh2d6 protein_coding protein_coding MGP_C57BL6NJ_T0078573.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74989379 74995017 - Sh2d6 protein_coding processed_transcript MGP_C57BL6NJ_T0078574.1 MGP_C57BL6NJ_G0031317.1 mouse_genomes_project 6 74991461 74996674 - Sh2d6 protein_coding retained_intron MGP_C57BL6NJ_T0103267.1 MGP_C57BL6NJ_G0041061.1 mouse_genomes_project 6 75927353 75928258 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081006.1 MGP_C57BL6NJ_G0031814.1 mouse_genomes_project 6 139297585 139298494 - MGP_C57BL6NJ_P0081006 Tas2r104 protein_coding protein_coding MGP_C57BL6NJ_T0078264.1 MGP_C57BL6NJ_G0031245.1 mouse_genomes_project 6 58743163 58744072 - MGP_C57BL6NJ_P0078264 protein_coding protein_coding MGP_C57BL6NJ_T0077665.1 MGP_C57BL6NJ_G0031075.1 mouse_genomes_project 6 41505982 41510451 + MGP_C57BL6NJ_P0077665 Sval1 protein_coding protein_coding MGP_C57BL6NJ_T0076991.1 MGP_C57BL6NJ_G0030927.1 mouse_genomes_project 6 21864028 21865267 - MGP_C57BL6NJ_P0076991 Rnf148 protein_coding protein_coding MGP_C57BL6NJ_T0002110.1 MGP_C57BL6NJ_G0002001.1 mouse_genomes_project 6 45749974 45752339 + TEC TEC MGP_C57BL6NJ_T0081365.1 MGP_C57BL6NJ_G0031911.1 mouse_genomes_project 6 151411140 151417915 - MGP_C57BL6NJ_P0081365 Kcnj8 protein_coding protein_coding MGP_C57BL6NJ_T0081366.1 MGP_C57BL6NJ_G0031911.1 mouse_genomes_project 6 151411142 151417672 - MGP_C57BL6NJ_P0081366 Kcnj8 protein_coding protein_coding MGP_C57BL6NJ_T0008917.1 MGP_C57BL6NJ_G0007210.1 mouse_genomes_project 6 135966449 135967063 - Gm44066 lincRNA lincRNA MGP_C57BL6NJ_T0078024.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52204331 52365111 - MGP_C57BL6NJ_P0078024 Skap2 protein_coding protein_coding MGP_C57BL6NJ_T0078025.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52206013 52219679 - Skap2 protein_coding processed_transcript MGP_C57BL6NJ_T0078026.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52206075 52365077 - MGP_C57BL6NJ_P0078026 Skap2 protein_coding protein_coding MGP_C57BL6NJ_T0078027.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52206965 52257958 - MGP_C57BL6NJ_P0078027 Skap2 protein_coding protein_coding MGP_C57BL6NJ_T0078028.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52217977 52220420 - Skap2 protein_coding retained_intron MGP_C57BL6NJ_T0078029.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52222221 52283399 - Skap2 protein_coding processed_transcript MGP_C57BL6NJ_T0078030.1 MGP_C57BL6NJ_G0031173.1 mouse_genomes_project 6 52343084 52365094 - Skap2 protein_coding retained_intron MGP_C57BL6NJ_T0080252.1 MGP_C57BL6NJ_G0031639.1 mouse_genomes_project 6 126314685 126315754 + MGP_C57BL6NJ_P0080252 D330020A13Rik protein_coding protein_coding MGP_C57BL6NJ_T0078897.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404596 87634524 + MGP_C57BL6NJ_P0078897 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078898.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404708 87634360 + MGP_C57BL6NJ_P0078898 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078899.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404708 87634360 + MGP_C57BL6NJ_P0078899 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078900.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404708 87634360 + MGP_C57BL6NJ_P0078900 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078901.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404773 87634360 + MGP_C57BL6NJ_P0078901 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078902.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404921 87634523 + MGP_C57BL6NJ_P0078902 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078903.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87404921 87634295 + MGP_C57BL6NJ_P0078903 Dysf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078904.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418488 87634321 + MGP_C57BL6NJ_P0078904 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078905.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418488 87634523 + MGP_C57BL6NJ_P0078905 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078906.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418488 87634321 + MGP_C57BL6NJ_P0078906 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078907.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418488 87634321 + MGP_C57BL6NJ_P0078907 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078908.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418489 87634524 + MGP_C57BL6NJ_P0078908 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078909.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87418492 87634523 + MGP_C57BL6NJ_P0078909 Dysf protein_coding protein_coding MGP_C57BL6NJ_T0078910.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87523305 87530019 + Dysf protein_coding processed_transcript MGP_C57BL6NJ_T0078911.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87524483 87534699 + Dysf protein_coding retained_intron MGP_C57BL6NJ_T0078912.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87565234 87570898 + Dysf protein_coding processed_transcript MGP_C57BL6NJ_T0078913.1 MGP_C57BL6NJ_G0031383.1 mouse_genomes_project 6 87633947 87634505 + Dysf protein_coding processed_transcript MGP_C57BL6NJ_T0078552.1 MGP_C57BL6NJ_G0031314.1 mouse_genomes_project 6 74847778 74854650 - MGP_C57BL6NJ_P0078552 Vamp8 protein_coding protein_coding MGP_C57BL6NJ_T0078553.1 MGP_C57BL6NJ_G0031314.1 mouse_genomes_project 6 74847783 74853858 - MGP_C57BL6NJ_P0078553 Vamp8 protein_coding protein_coding MGP_C57BL6NJ_T0076707.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2645084 2968898 + MGP_C57BL6NJ_P0076707 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076708.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2645208 2968889 + MGP_C57BL6NJ_P0076708 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076709.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2645236 2968898 + MGP_C57BL6NJ_P0076709 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076710.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2645257 2968898 + MGP_C57BL6NJ_P0076710 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076711.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2645263 2686709 + MGP_C57BL6NJ_P0076711 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076712.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2677077 2704557 + MGP_C57BL6NJ_P0076712 Dync1i1 protein_coding protein_coding MGP_C57BL6NJ_T0076713.1 MGP_C57BL6NJ_G0030874.1 mouse_genomes_project 6 2947073 2968646 + Dync1i1 protein_coding retained_intron MGP_C57BL6NJ_T0078183.1 MGP_C57BL6NJ_G0031211.1 mouse_genomes_project 6 56320546 56323976 - MGP_C57BL6NJ_P0078183 Neurod6 protein_coding protein_coding MGP_C57BL6NJ_T0011053.1 MGP_C57BL6NJ_G0009138.1 mouse_genomes_project 6 121438491 121438554 + Mir7660 miRNA miRNA MGP_C57BL6NJ_T0099137.1 MGP_C57BL6NJ_G0037201.1 mouse_genomes_project 6 117025096 117025207 + Gm22093 rRNA rRNA MGP_C57BL6NJ_T0002203.1 MGP_C57BL6NJ_G0002094.1 mouse_genomes_project 6 91610434 91611521 + TEC TEC MGP_C57BL6NJ_T0076647.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1292780 1308073 + MGP_C57BL6NJ_P0076647 Col1a2 protein_coding protein_coding MGP_C57BL6NJ_T0076648.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1296000 1333259 + MGP_C57BL6NJ_P0076648 Col1a2 protein_coding protein_coding MGP_C57BL6NJ_T0076649.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1296209 1306673 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0076650.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1296209 1306180 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0076651.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1312342 1321167 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0076652.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1321870 1327600 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0076653.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1327495 1328338 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0076654.1 MGP_C57BL6NJ_G0030864.1 mouse_genomes_project 6 1329203 1329705 + Col1a2 protein_coding retained_intron MGP_C57BL6NJ_T0015828.1 MGP_C57BL6NJ_G0013873.1 mouse_genomes_project 6 69191896 69193152 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016022.1 MGP_C57BL6NJ_G0014067.1 mouse_genomes_project 6 135325248 135325645 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101824.1 MGP_C57BL6NJ_G0039870.1 mouse_genomes_project 6 123967449 123967581 - Gm23908 snoRNA snoRNA MGP_C57BL6NJ_T0000463.1 MGP_C57BL6NJ_G0000382.1 mouse_genomes_project 6 72923221 72923796 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0077433.1 MGP_C57BL6NJ_G0031008.1 mouse_genomes_project 6 34282061 34296916 - MGP_C57BL6NJ_P0077433 Fam180a protein_coding protein_coding MGP_C57BL6NJ_T0101774.1 MGP_C57BL6NJ_G0039820.1 mouse_genomes_project 6 5597159 5597280 - Gm26075 snoRNA snoRNA MGP_C57BL6NJ_T0008965.1 MGP_C57BL6NJ_G0007240.1 mouse_genomes_project 6 157354972 157356179 - Gm17216 lincRNA lincRNA MGP_C57BL6NJ_T0101789.1 MGP_C57BL6NJ_G0039835.1 mouse_genomes_project 6 49041930 49042060 + Gm24348 snoRNA snoRNA MGP_C57BL6NJ_T0008755.1 MGP_C57BL6NJ_G0007077.1 mouse_genomes_project 6 37793231 37795756 - Gm26699 lincRNA lincRNA MGP_C57BL6NJ_T0077345.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33285645 33298363 + MGP_C57BL6NJ_P0077345 Akr1b10 protein_coding protein_coding MGP_C57BL6NJ_T0077346.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33285676 33291007 + Akr1b10 protein_coding retained_intron MGP_C57BL6NJ_T0077347.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33285708 33298161 + MGP_C57BL6NJ_P0077347 Akr1b10 protein_coding protein_coding MGP_C57BL6NJ_T0077348.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33285708 33298360 + MGP_C57BL6NJ_P0077348 Akr1b10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077349.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33291026 33291995 + Akr1b10 protein_coding retained_intron MGP_C57BL6NJ_T0077350.1 MGP_C57BL6NJ_G0030995.1 mouse_genomes_project 6 33292858 33294383 + Akr1b10 protein_coding retained_intron MGP_C57BL6NJ_T0078228.1 MGP_C57BL6NJ_G0031224.1 mouse_genomes_project 6 57779817 57781400 + MGP_C57BL6NJ_P0078228 Vmn1r8 protein_coding protein_coding MGP_C57BL6NJ_T0005077.1 MGP_C57BL6NJ_G0004353.1 mouse_genomes_project 6 26728275 26775135 + 6530409C15Rik antisense antisense MGP_C57BL6NJ_T0005078.1 MGP_C57BL6NJ_G0004353.1 mouse_genomes_project 6 26728296 26731623 + 6530409C15Rik antisense antisense MGP_C57BL6NJ_T0016023.1 MGP_C57BL6NJ_G0014068.1 mouse_genomes_project 6 135344434 135345001 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015678.1 MGP_C57BL6NJ_G0013723.1 mouse_genomes_project 6 20865550 20866318 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008942.1 MGP_C57BL6NJ_G0007224.1 mouse_genomes_project 6 150646716 150657769 + Gm44244 lincRNA lincRNA MGP_C57BL6NJ_T0015962.1 MGP_C57BL6NJ_G0014007.1 mouse_genomes_project 6 119732506 119733146 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103270.1 MGP_C57BL6NJ_G0041064.1 mouse_genomes_project 6 89791104 89792147 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077881.1 MGP_C57BL6NJ_G0031141.1 mouse_genomes_project 6 48745269 48747965 + MGP_C57BL6NJ_P0077881 Gimap9 protein_coding protein_coding MGP_C57BL6NJ_T0077882.1 MGP_C57BL6NJ_G0031141.1 mouse_genomes_project 6 48746776 48748382 + MGP_C57BL6NJ_P0077882 Gimap9 protein_coding protein_coding MGP_C57BL6NJ_T0078065.1 MGP_C57BL6NJ_G0031187.1 mouse_genomes_project 6 52710001 52714882 + MGP_C57BL6NJ_P0078065 Evx1 protein_coding protein_coding MGP_C57BL6NJ_T0078066.1 MGP_C57BL6NJ_G0031187.1 mouse_genomes_project 6 52710055 52713148 + MGP_C57BL6NJ_P0078066 Evx1 protein_coding protein_coding MGP_C57BL6NJ_T0002050.1 MGP_C57BL6NJ_G0001941.1 mouse_genomes_project 6 1416278 1417216 + TEC TEC MGP_C57BL6NJ_T0081467.1 MGP_C57BL6NJ_G0031925.1 mouse_genomes_project 6 154676355 154684729 + MGP_C57BL6NJ_P0081467 Tuba3b protein_coding protein_coding MGP_C57BL6NJ_T0008842.1 MGP_C57BL6NJ_G0007148.1 mouse_genomes_project 6 91529425 91530763 + Gm43904 lincRNA lincRNA MGP_C57BL6NJ_T0098885.1 MGP_C57BL6NJ_G0036949.1 mouse_genomes_project 6 52607551 52607999 - pseudogene pseudogene MGP_C57BL6NJ_T0002121.1 MGP_C57BL6NJ_G0002012.1 mouse_genomes_project 6 49389590 49402688 + TEC TEC MGP_C57BL6NJ_T0015812.1 MGP_C57BL6NJ_G0013857.1 mouse_genomes_project 6 67931130 67931296 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011890.1 MGP_C57BL6NJ_G0009975.1 mouse_genomes_project 6 15420996 15421252 + Gm27542 misc_RNA misc_RNA MGP_C57BL6NJ_T0015907.1 MGP_C57BL6NJ_G0013952.1 mouse_genomes_project 6 98595277 98595693 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015848.1 MGP_C57BL6NJ_G0013893.1 mouse_genomes_project 6 73716401 73716800 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002073.1 MGP_C57BL6NJ_G0001964.1 mouse_genomes_project 6 22923801 22926636 - TEC TEC MGP_C57BL6NJ_T0005083.1 MGP_C57BL6NJ_G0004358.1 mouse_genomes_project 6 29461632 29462528 - Gm44296 antisense antisense MGP_C57BL6NJ_T0081009.1 MGP_C57BL6NJ_G0031817.1 mouse_genomes_project 6 139678557 140075611 - MGP_C57BL6NJ_P0081009 Prpmp5 protein_coding protein_coding MGP_C57BL6NJ_T0100504.1 MGP_C57BL6NJ_G0038550.1 mouse_genomes_project 6 3939546 3939708 - Gm22155 snRNA snRNA MGP_C57BL6NJ_T0100553.1 MGP_C57BL6NJ_G0038599.1 mouse_genomes_project 6 131669783 131669886 + Gm23851 snRNA snRNA MGP_C57BL6NJ_T0080697.1 MGP_C57BL6NJ_G0031726.1 mouse_genomes_project 6 131954028 131961938 - MGP_C57BL6NJ_P0080697 Tapbpl protein_coding protein_coding MGP_C57BL6NJ_T0008800.1 MGP_C57BL6NJ_G0007113.1 mouse_genomes_project 6 67988912 67996729 - lincRNA lincRNA MGP_C57BL6NJ_T0008801.1 MGP_C57BL6NJ_G0007113.1 mouse_genomes_project 6 67991157 67996768 - lincRNA lincRNA MGP_C57BL6NJ_T0077522.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38137936 38219256 + MGP_C57BL6NJ_P0077522 Tbxas1 protein_coding protein_coding MGP_C57BL6NJ_T0077523.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38184304 38357043 + MGP_C57BL6NJ_P0077523 Tbxas1 protein_coding protein_coding MGP_C57BL6NJ_T0077524.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38184329 38298159 + Tbxas1 protein_coding retained_intron MGP_C57BL6NJ_T0077525.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38184348 38357043 + Tbxas1 protein_coding retained_intron MGP_C57BL6NJ_T0077526.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38206450 38268848 + MGP_C57BL6NJ_P0077526 Tbxas1 protein_coding protein_coding MGP_C57BL6NJ_T0077527.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38238133 38251001 + Tbxas1 protein_coding processed_transcript MGP_C57BL6NJ_T0077528.1 MGP_C57BL6NJ_G0031029.1 mouse_genomes_project 6 38250784 38344995 + Tbxas1 protein_coding retained_intron MGP_C57BL6NJ_T0002708.1 MGP_C57BL6NJ_G0002587.1 mouse_genomes_project 6 41057349 41057394 + Trbj1-7 TR_J_gene processed_transcript MGP_C57BL6NJ_T0002709.1 MGP_C57BL6NJ_G0002587.1 mouse_genomes_project 6 41057349 41057395 + MGP_C57BL6NJ_P0002709 Trbj1-7 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0103280.1 MGP_C57BL6NJ_G0041074.1 mouse_genomes_project 6 94185591 94186534 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0080771.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133820422 133849839 + D6Wsu163e protein_coding retained_intron MGP_C57BL6NJ_T0080772.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133820426 133858395 + MGP_C57BL6NJ_P0080772 D6Wsu163e protein_coding protein_coding MGP_C57BL6NJ_T0080773.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133820431 133823082 + D6Wsu163e protein_coding retained_intron MGP_C57BL6NJ_T0080774.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133820435 133827948 + D6Wsu163e protein_coding retained_intron MGP_C57BL6NJ_T0080775.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133820489 133825271 + MGP_C57BL6NJ_P0080775 D6Wsu163e protein_coding protein_coding MGP_C57BL6NJ_T0080776.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133830746 133835561 + D6Wsu163e protein_coding retained_intron MGP_C57BL6NJ_T0080777.1 MGP_C57BL6NJ_G0031744.1 mouse_genomes_project 6 133856536 133857731 + D6Wsu163e protein_coding retained_intron MGP_C57BL6NJ_T0010999.1 MGP_C57BL6NJ_G0009084.1 mouse_genomes_project 6 17425832 17425952 + Mir6370 miRNA miRNA MGP_C57BL6NJ_T0078252.1 MGP_C57BL6NJ_G0031241.1 mouse_genomes_project 6 58525219 58569931 + MGP_C57BL6NJ_P0078252 Lancl2 protein_coding protein_coding MGP_C57BL6NJ_T0078253.1 MGP_C57BL6NJ_G0031241.1 mouse_genomes_project 6 58525315 58568974 + MGP_C57BL6NJ_P0078253 Lancl2 protein_coding protein_coding MGP_C57BL6NJ_T0078254.1 MGP_C57BL6NJ_G0031241.1 mouse_genomes_project 6 58525766 58569930 + MGP_C57BL6NJ_P0078254 Lancl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015626.1 MGP_C57BL6NJ_G0013671.1 mouse_genomes_project 6 1172217 1172539 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076843.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13326041 13409684 + MGP_C57BL6NJ_P0076843 Mdfic protein_coding protein_coding MGP_C57BL6NJ_T0076844.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13326041 13409688 + MGP_C57BL6NJ_P0076844 Mdfic protein_coding protein_coding MGP_C57BL6NJ_T0076845.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13326083 13377725 + MGP_C57BL6NJ_P0076845 Mdfic protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076846.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13326101 13379794 + MGP_C57BL6NJ_P0076846 Mdfic protein_coding protein_coding MGP_C57BL6NJ_T0076847.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13326467 13408327 + MGP_C57BL6NJ_P0076847 Mdfic protein_coding protein_coding MGP_C57BL6NJ_T0076848.1 MGP_C57BL6NJ_G0030902.1 mouse_genomes_project 6 13334381 13376839 + MGP_C57BL6NJ_P0076848 Mdfic protein_coding protein_coding MGP_C57BL6NJ_T0008716.1 MGP_C57BL6NJ_G0007055.1 mouse_genomes_project 6 29811183 29811487 - Gm13834 lincRNA lincRNA MGP_C57BL6NJ_T0005087.1 MGP_C57BL6NJ_G0004361.1 mouse_genomes_project 6 31308284 31312788 + Plxna4os1 antisense antisense MGP_C57BL6NJ_T0078286.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59734574 59750893 + MGP_C57BL6NJ_P0078286 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078287.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59734612 59750879 + MGP_C57BL6NJ_P0078287 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078288.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59734633 59762054 + MGP_C57BL6NJ_P0078288 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078289.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59734857 59762058 + MGP_C57BL6NJ_P0078289 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078290.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59734970 59817727 + MGP_C57BL6NJ_P0078290 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078291.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59736809 59839887 + MGP_C57BL6NJ_P0078291 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078292.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59774357 59786569 + Herc3 protein_coding retained_intron MGP_C57BL6NJ_T0078293.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59787166 59787866 + Herc3 protein_coding processed_transcript MGP_C57BL6NJ_T0078294.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59802918 59816197 + MGP_C57BL6NJ_P0078294 Herc3 protein_coding protein_coding MGP_C57BL6NJ_T0078295.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59815393 59818155 + Herc3 protein_coding retained_intron MGP_C57BL6NJ_T0078298.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59825198 59836312 + Herc3 protein_coding processed_transcript MGP_C57BL6NJ_T0078299.1 MGP_C57BL6NJ_G0031255.1 mouse_genomes_project 6 59827583 59839889 + MGP_C57BL6NJ_P0078299 Herc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078638.1 MGP_C57BL6NJ_G0031331.1 mouse_genomes_project 6 81141488 81146907 + MGP_C57BL6NJ_P0078638 Gm8994 protein_coding protein_coding MGP_C57BL6NJ_T0078639.1 MGP_C57BL6NJ_G0031331.1 mouse_genomes_project 6 81141497 81142371 + MGP_C57BL6NJ_P0078639 Gm8994 protein_coding protein_coding MGP_C57BL6NJ_T0078640.1 MGP_C57BL6NJ_G0031331.1 mouse_genomes_project 6 81141510 81146706 + MGP_C57BL6NJ_P0078640 Gm8994 protein_coding protein_coding MGP_C57BL6NJ_T0081362.1 MGP_C57BL6NJ_G0031910.1 mouse_genomes_project 6 151328682 151347760 - MGP_C57BL6NJ_P0081362 Ldhb protein_coding protein_coding MGP_C57BL6NJ_T0081363.1 MGP_C57BL6NJ_G0031910.1 mouse_genomes_project 6 151328773 151341139 - MGP_C57BL6NJ_P0081363 Ldhb protein_coding protein_coding MGP_C57BL6NJ_T0081364.1 MGP_C57BL6NJ_G0031910.1 mouse_genomes_project 6 151334005 151347557 - MGP_C57BL6NJ_P0081364 Ldhb protein_coding protein_coding MGP_C57BL6NJ_T0079363.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94626934 94689787 - MGP_C57BL6NJ_P0079363 Iqsec1 protein_coding protein_coding MGP_C57BL6NJ_T0079364.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94630444 94632993 - Iqsec1 protein_coding retained_intron MGP_C57BL6NJ_T0079365.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94630444 94784678 - MGP_C57BL6NJ_P0079365 Iqsec1 protein_coding protein_coding MGP_C57BL6NJ_T0079366.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94633332 94639356 - Iqsec1 protein_coding processed_transcript MGP_C57BL6NJ_T0079367.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94633516 94638704 - Iqsec1 protein_coding processed_transcript MGP_C57BL6NJ_T0079368.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94663186 94668065 - Iqsec1 protein_coding processed_transcript MGP_C57BL6NJ_T0079369.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94663900 94737379 - MGP_C57BL6NJ_P0079369 Iqsec1 protein_coding protein_coding MGP_C57BL6NJ_T0079370.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94664030 94709933 - Iqsec1 protein_coding processed_transcript MGP_C57BL6NJ_T0079371.1 MGP_C57BL6NJ_G0031480.1 mouse_genomes_project 6 94667967 94730797 - Iqsec1 protein_coding processed_transcript MGP_C57BL6NJ_T0011073.1 MGP_C57BL6NJ_G0009158.1 mouse_genomes_project 6 145146592 145146733 - Gm44364 miRNA miRNA MGP_C57BL6NJ_T0011012.1 MGP_C57BL6NJ_G0009097.1 mouse_genomes_project 6 35458595 35458679 + Mir490 miRNA miRNA MGP_C57BL6NJ_T0000421.1 MGP_C57BL6NJ_G0000340.1 mouse_genomes_project 6 70828027 70828430 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0081510.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720646 155729138 + Med21 protein_coding processed_transcript MGP_C57BL6NJ_T0081511.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720646 155729138 + MGP_C57BL6NJ_P0081511 Med21 protein_coding protein_coding MGP_C57BL6NJ_T0081512.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720678 155722073 + Med21 protein_coding retained_intron MGP_C57BL6NJ_T0081513.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720679 155728069 + MGP_C57BL6NJ_P0081513 Med21 protein_coding protein_coding MGP_C57BL6NJ_T0081514.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720680 155729138 + Med21 protein_coding processed_transcript MGP_C57BL6NJ_T0081515.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155720690 155729268 + MGP_C57BL6NJ_P0081515 Med21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081516.1 MGP_C57BL6NJ_G0031933.1 mouse_genomes_project 6 155725339 155729138 + Med21 protein_coding retained_intron MGP_C57BL6NJ_T0081316.1 MGP_C57BL6NJ_G0031899.1 mouse_genomes_project 6 150578836 150637305 - MGP_C57BL6NJ_P0081316 Slco1a4 protein_coding protein_coding MGP_C57BL6NJ_T0081317.1 MGP_C57BL6NJ_G0031899.1 mouse_genomes_project 6 150580118 150626603 - MGP_C57BL6NJ_P0081317 Slco1a4 protein_coding protein_coding MGP_C57BL6NJ_T0081318.1 MGP_C57BL6NJ_G0031899.1 mouse_genomes_project 6 150614695 150637333 - MGP_C57BL6NJ_P0081318 Slco1a4 protein_coding protein_coding MGP_C57BL6NJ_T0081319.1 MGP_C57BL6NJ_G0031899.1 mouse_genomes_project 6 150632140 150634816 - Slco1a4 protein_coding retained_intron MGP_C57BL6NJ_T0002175.1 MGP_C57BL6NJ_G0002066.1 mouse_genomes_project 6 83944092 83946761 + TEC TEC MGP_C57BL6NJ_T0008792.1 MGP_C57BL6NJ_G0007106.1 mouse_genomes_project 6 57294930 57371410 - Gm8239 lincRNA lincRNA MGP_C57BL6NJ_T0008817.1 MGP_C57BL6NJ_G0007129.1 mouse_genomes_project 6 81884069 81884389 - Gm29005 lincRNA lincRNA MGP_C57BL6NJ_T0077802.1 MGP_C57BL6NJ_G0031121.1 mouse_genomes_project 6 47744385 47752208 - MGP_C57BL6NJ_P0077802 Zfp786 protein_coding protein_coding MGP_C57BL6NJ_T0077803.1 MGP_C57BL6NJ_G0031121.1 mouse_genomes_project 6 47746777 47752208 - Zfp786 protein_coding processed_transcript MGP_C57BL6NJ_T0081269.1 MGP_C57BL6NJ_G0031889.1 mouse_genomes_project 6 148438034 148576198 + MGP_C57BL6NJ_P0081269 Pik3c2g protein_coding protein_coding MGP_C57BL6NJ_T0100507.1 MGP_C57BL6NJ_G0038553.1 mouse_genomes_project 6 16561166 16561273 + Gm23648 snRNA snRNA MGP_C57BL6NJ_T0015751.1 MGP_C57BL6NJ_G0013796.1 mouse_genomes_project 6 49297118 49297320 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015803.1 MGP_C57BL6NJ_G0013848.1 mouse_genomes_project 6 66713454 66713864 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002300.1 MGP_C57BL6NJ_G0002190.1 mouse_genomes_project 6 142665564 142666315 + TEC TEC MGP_C57BL6NJ_T0103274.1 MGP_C57BL6NJ_G0041068.1 mouse_genomes_project 6 93700202 93701187 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102530.1 MGP_C57BL6NJ_G0040381.1 mouse_genomes_project 6 136152557 136158973 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102531.1 MGP_C57BL6NJ_G0040381.1 mouse_genomes_project 6 136157027 136158965 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0015960.1 MGP_C57BL6NJ_G0014005.1 mouse_genomes_project 6 119609491 119609567 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015810.1 MGP_C57BL6NJ_G0013855.1 mouse_genomes_project 6 67479909 67480603 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011922.1 MGP_C57BL6NJ_G0010007.1 mouse_genomes_project 6 87081838 87082032 + Gm27893 misc_RNA misc_RNA MGP_C57BL6NJ_T0080981.1 MGP_C57BL6NJ_G0031804.1 mouse_genomes_project 6 137465161 137695504 - MGP_C57BL6NJ_P0080981 protein_coding protein_coding MGP_C57BL6NJ_T0015774.1 MGP_C57BL6NJ_G0013819.1 mouse_genomes_project 6 58990299 58990558 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100523.1 MGP_C57BL6NJ_G0038569.1 mouse_genomes_project 6 53913671 53913835 + Gm25818 snRNA snRNA MGP_C57BL6NJ_T0002215.1 MGP_C57BL6NJ_G0002106.1 mouse_genomes_project 6 94247841 94250953 + TEC TEC MGP_C57BL6NJ_T0077713.1 MGP_C57BL6NJ_G0031088.1 mouse_genomes_project 6 41947218 41948311 + MGP_C57BL6NJ_P0077713 Tas2r135 protein_coding protein_coding MGP_C57BL6NJ_T0018750.1 MGP_C57BL6NJ_G0016031.1 mouse_genomes_project 6 68694006 68748508 + A430010J10Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018751.1 MGP_C57BL6NJ_G0016031.1 mouse_genomes_project 6 68694010 68695368 + A430010J10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018752.1 MGP_C57BL6NJ_G0016031.1 mouse_genomes_project 6 68744976 68748192 + A430010J10Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018753.1 MGP_C57BL6NJ_G0016031.1 mouse_genomes_project 6 68745255 68745698 + A430010J10Rik processed_transcript pseudogene MGP_C57BL6NJ_T0103288.1 MGP_C57BL6NJ_G0041081.1 mouse_genomes_project 6 136046101 136046215 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102294.1 MGP_C57BL6NJ_G0040269.1 mouse_genomes_project 6 66764907 66765977 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102295.1 MGP_C57BL6NJ_G0040269.1 mouse_genomes_project 6 66765027 66765745 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0079743.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118743663 118788379 + MGP_C57BL6NJ_P0079743 Mtmr14 protein_coding protein_coding MGP_C57BL6NJ_T0079744.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118743671 118777781 + MGP_C57BL6NJ_P0079744 Mtmr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079745.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118743717 118788374 + MGP_C57BL6NJ_P0079745 Mtmr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079746.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118745291 118764079 + MGP_C57BL6NJ_P0079746 Mtmr14 protein_coding protein_coding MGP_C57BL6NJ_T0079747.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118759659 118776496 + MGP_C57BL6NJ_P0079747 Mtmr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079748.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118762884 118773027 + MGP_C57BL6NJ_P0079748 Mtmr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079749.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118767633 118784922 + MGP_C57BL6NJ_P0079749 Mtmr14 protein_coding protein_coding MGP_C57BL6NJ_T0079750.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118772960 118787906 + MGP_C57BL6NJ_P0079750 Mtmr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079751.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118772991 118788183 + MGP_C57BL6NJ_P0079751 Mtmr14 protein_coding protein_coding MGP_C57BL6NJ_T0079752.1 MGP_C57BL6NJ_G0031553.1 mouse_genomes_project 6 118776535 118788074 + MGP_C57BL6NJ_P0079752 Mtmr14 protein_coding protein_coding MGP_C57BL6NJ_T0078359.1 MGP_C57BL6NJ_G0031269.1 mouse_genomes_project 6 67129028 67174454 + MGP_C57BL6NJ_P0078359 Ndnf protein_coding protein_coding MGP_C57BL6NJ_T0078360.1 MGP_C57BL6NJ_G0031269.1 mouse_genomes_project 6 67163557 67165568 + Ndnf protein_coding retained_intron MGP_C57BL6NJ_T0077012.1 MGP_C57BL6NJ_G0030937.1 mouse_genomes_project 6 23057201 23068940 + MGP_C57BL6NJ_P0077012 Spam1 protein_coding protein_coding MGP_C57BL6NJ_T0077013.1 MGP_C57BL6NJ_G0030937.1 mouse_genomes_project 6 23057214 23068940 + MGP_C57BL6NJ_P0077013 Spam1 protein_coding protein_coding MGP_C57BL6NJ_T0077014.1 MGP_C57BL6NJ_G0030937.1 mouse_genomes_project 6 23057228 23063771 + Spam1 protein_coding retained_intron MGP_C57BL6NJ_T0077015.1 MGP_C57BL6NJ_G0030937.1 mouse_genomes_project 6 23062544 23068940 + MGP_C57BL6NJ_P0077015 Spam1 protein_coding protein_coding MGP_C57BL6NJ_T0015673.1 MGP_C57BL6NJ_G0013718.1 mouse_genomes_project 6 18958525 18959078 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015672.1 MGP_C57BL6NJ_G0013717.1 mouse_genomes_project 6 17679698 17680664 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011882.1 MGP_C57BL6NJ_G0009967.1 mouse_genomes_project 6 3822711 3822918 + Gm27905 misc_RNA misc_RNA MGP_C57BL6NJ_T0005198.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036684 97395369 + antisense antisense MGP_C57BL6NJ_T0005199.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036724 97395279 + antisense antisense MGP_C57BL6NJ_T0005200.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036933 97215881 + antisense antisense MGP_C57BL6NJ_T0005201.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036937 97216164 + antisense antisense MGP_C57BL6NJ_T0005202.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036937 97252872 + antisense antisense MGP_C57BL6NJ_T0005203.1 MGP_C57BL6NJ_G0004437.1 mouse_genomes_project 6 97036937 97395367 + antisense antisense MGP_C57BL6NJ_T0076998.1 MGP_C57BL6NJ_G0030930.1 mouse_genomes_project 6 22708035 22777336 - MGP_C57BL6NJ_P0076998 Iqub protein_coding protein_coding MGP_C57BL6NJ_T0015971.1 MGP_C57BL6NJ_G0014016.1 mouse_genomes_project 6 122379549 122382238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002311.1 MGP_C57BL6NJ_G0002201.1 mouse_genomes_project 6 148944820 148945814 - TEC TEC MGP_C57BL6NJ_T0002054.1 MGP_C57BL6NJ_G0001945.1 mouse_genomes_project 6 1827157 1827477 + TEC TEC MGP_C57BL6NJ_T0015775.1 MGP_C57BL6NJ_G0013820.1 mouse_genomes_project 6 59295101 59295470 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002639.1 MGP_C57BL6NJ_G0002523.1 mouse_genomes_project 6 41054908 41054920 + MGP_C57BL6NJ_P0002639 Trbd1 TR_D_gene TR_D_gene MGP_C57BL6NJ_T0015755.1 MGP_C57BL6NJ_G0013800.1 mouse_genomes_project 6 49912179 49912452 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015957.1 MGP_C57BL6NJ_G0014002.1 mouse_genomes_project 6 118963766 118964175 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078631.1 MGP_C57BL6NJ_G0031329.1 mouse_genomes_project 6 80098910 80113768 + MGP_C57BL6NJ_P0078631 Lrrtm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078632.1 MGP_C57BL6NJ_G0031329.1 mouse_genomes_project 6 80098918 80101739 + MGP_C57BL6NJ_P0078632 Lrrtm1 protein_coding protein_coding MGP_C57BL6NJ_T0078633.1 MGP_C57BL6NJ_G0031329.1 mouse_genomes_project 6 80098939 80101733 + MGP_C57BL6NJ_P0078633 Lrrtm1 protein_coding protein_coding MGP_C57BL6NJ_T0078634.1 MGP_C57BL6NJ_G0031329.1 mouse_genomes_project 6 80099143 80100334 + MGP_C57BL6NJ_P0078634 Lrrtm1 protein_coding protein_coding MGP_C57BL6NJ_T0002811.1 MGP_C57BL6NJ_G0002675.1 mouse_genomes_project 6 40515205 40515861 + MGP_C57BL6NJ_P0002811 Trbv2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0077749.1 MGP_C57BL6NJ_G0031109.1 mouse_genomes_project 6 42805065 42806119 + MGP_C57BL6NJ_P0077749 Olfr13 protein_coding protein_coding MGP_C57BL6NJ_T0018717.1 MGP_C57BL6NJ_G0016021.1 mouse_genomes_project 6 52538647 52542425 + Hoxaas2 processed_transcript antisense MGP_C57BL6NJ_T0018718.1 MGP_C57BL6NJ_G0016021.1 mouse_genomes_project 6 52539491 52542538 + Hoxaas2 processed_transcript retained_intron MGP_C57BL6NJ_T0018719.1 MGP_C57BL6NJ_G0016021.1 mouse_genomes_project 6 52541483 52542538 + Hoxaas2 processed_transcript processed_transcript MGP_C57BL6NJ_T0078824.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86812641 86839302 - MGP_C57BL6NJ_P0078824 Dguok protein_coding protein_coding MGP_C57BL6NJ_T0078825.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86812643 86839256 - MGP_C57BL6NJ_P0078825 Dguok protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078826.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86812733 86839234 - MGP_C57BL6NJ_P0078826 Dguok protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078827.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86813289 86826090 - Dguok protein_coding processed_transcript MGP_C57BL6NJ_T0078828.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86813637 86819431 - Dguok protein_coding processed_transcript MGP_C57BL6NJ_T0078829.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86820399 86822841 - Dguok protein_coding retained_intron MGP_C57BL6NJ_T0078830.1 MGP_C57BL6NJ_G0031371.1 mouse_genomes_project 6 86822628 86839320 - Dguok protein_coding retained_intron MGP_C57BL6NJ_T0002133.1 MGP_C57BL6NJ_G0002024.1 mouse_genomes_project 6 57690339 57693323 - TEC TEC MGP_C57BL6NJ_T0015700.1 MGP_C57BL6NJ_G0013745.1 mouse_genomes_project 6 32058491 32059263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076631.1 MGP_C57BL6NJ_G0030859.1 mouse_genomes_project 6 429030 506890 - MGP_C57BL6NJ_P0076631 Calcr protein_coding protein_coding MGP_C57BL6NJ_T0076632.1 MGP_C57BL6NJ_G0030859.1 mouse_genomes_project 6 429070 507974 - MGP_C57BL6NJ_P0076632 Calcr protein_coding protein_coding MGP_C57BL6NJ_T0076633.1 MGP_C57BL6NJ_G0030859.1 mouse_genomes_project 6 429083 507918 - MGP_C57BL6NJ_P0076633 Calcr protein_coding protein_coding MGP_C57BL6NJ_T0076634.1 MGP_C57BL6NJ_G0030859.1 mouse_genomes_project 6 430172 496248 - MGP_C57BL6NJ_P0076634 Calcr protein_coding protein_coding MGP_C57BL6NJ_T0076635.1 MGP_C57BL6NJ_G0030859.1 mouse_genomes_project 6 430172 496248 - MGP_C57BL6NJ_P0076635 Calcr protein_coding protein_coding MGP_C57BL6NJ_T0079594.1 MGP_C57BL6NJ_G0031523.1 mouse_genomes_project 6 104239587 104254713 - MGP_C57BL6NJ_P0079594 Prok2 protein_coding protein_coding MGP_C57BL6NJ_T0079595.1 MGP_C57BL6NJ_G0031523.1 mouse_genomes_project 6 104239638 104254674 - MGP_C57BL6NJ_P0079595 Prok2 protein_coding protein_coding MGP_C57BL6NJ_T0079596.1 MGP_C57BL6NJ_G0031523.1 mouse_genomes_project 6 104240308 104254704 - MGP_C57BL6NJ_P0079596 Prok2 protein_coding protein_coding MGP_C57BL6NJ_T0079597.1 MGP_C57BL6NJ_G0031523.1 mouse_genomes_project 6 104250434 104254713 - MGP_C57BL6NJ_P0079597 Prok2 protein_coding protein_coding MGP_C57BL6NJ_T0079238.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550289 92659173 + MGP_C57BL6NJ_P0079238 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079239.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550347 92551919 + Mgll protein_coding processed_transcript MGP_C57BL6NJ_T0079240.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550347 92655145 + MGP_C57BL6NJ_P0079240 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079241.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550358 92652389 + MGP_C57BL6NJ_P0079241 Mgll protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079242.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550371 92656804 + MGP_C57BL6NJ_P0079242 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079243.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550473 92592479 + MGP_C57BL6NJ_P0079243 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079244.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550581 92659173 + MGP_C57BL6NJ_P0079244 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079245.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550705 92659173 + MGP_C57BL6NJ_P0079245 Mgll protein_coding protein_coding MGP_C57BL6NJ_T0079246.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92550954 92656688 + MGP_C57BL6NJ_P0079246 Mgll protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079247.1 MGP_C57BL6NJ_G0031449.1 mouse_genomes_project 6 92652135 92655076 + Mgll protein_coding retained_intron MGP_C57BL6NJ_T0016016.1 MGP_C57BL6NJ_G0014061.1 mouse_genomes_project 6 134282673 134283206 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100505.1 MGP_C57BL6NJ_G0038551.1 mouse_genomes_project 6 12000805 12000911 - Gm23013 snRNA snRNA MGP_C57BL6NJ_T0077735.1 MGP_C57BL6NJ_G0031100.1 mouse_genomes_project 6 42367248 42368181 + MGP_C57BL6NJ_P0077735 Olfr450 protein_coding protein_coding MGP_C57BL6NJ_T0077967.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309073 50406691 + MGP_C57BL6NJ_P0077967 Mpp6 protein_coding protein_coding MGP_C57BL6NJ_T0077968.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309081 50406680 + MGP_C57BL6NJ_P0077968 Mpp6 protein_coding protein_coding MGP_C57BL6NJ_T0077969.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309110 50407032 + MGP_C57BL6NJ_P0077969 Mpp6 protein_coding protein_coding MGP_C57BL6NJ_T0077970.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309112 50312635 + Mpp6 protein_coding retained_intron MGP_C57BL6NJ_T0077971.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309215 50406517 + MGP_C57BL6NJ_P0077971 Mpp6 protein_coding protein_coding MGP_C57BL6NJ_T0077972.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309239 50369240 + MGP_C57BL6NJ_P0077972 Mpp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077973.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50309692 50388863 + MGP_C57BL6NJ_P0077973 Mpp6 protein_coding protein_coding MGP_C57BL6NJ_T0077974.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50388549 50404807 + Mpp6 protein_coding processed_transcript MGP_C57BL6NJ_T0077977.1 MGP_C57BL6NJ_G0031163.1 mouse_genomes_project 6 50402664 50406420 + Mpp6 protein_coding retained_intron MGP_C57BL6NJ_T0008870.1 MGP_C57BL6NJ_G0007167.1 mouse_genomes_project 6 104515047 104543790 - Gm44290 lincRNA lincRNA MGP_C57BL6NJ_T0081048.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142416413 142459073 + MGP_C57BL6NJ_P0081048 Bcl2l14 protein_coding protein_coding MGP_C57BL6NJ_T0081049.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142416440 142423436 + Bcl2l14 protein_coding processed_transcript MGP_C57BL6NJ_T0081050.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142418738 142459061 + MGP_C57BL6NJ_P0081050 Bcl2l14 protein_coding protein_coding MGP_C57BL6NJ_T0081051.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142418750 142444317 + MGP_C57BL6NJ_P0081051 Bcl2l14 protein_coding protein_coding MGP_C57BL6NJ_T0081052.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142434414 142458452 + MGP_C57BL6NJ_P0081052 Bcl2l14 protein_coding protein_coding MGP_C57BL6NJ_T0081053.1 MGP_C57BL6NJ_G0031845.1 mouse_genomes_project 6 142434451 142448827 + Bcl2l14 protein_coding retained_intron MGP_C57BL6NJ_T0077870.1 MGP_C57BL6NJ_G0031137.1 mouse_genomes_project 6 48662390 48681617 + Gm44965 protein_coding processed_transcript MGP_C57BL6NJ_T0077871.1 MGP_C57BL6NJ_G0031137.1 mouse_genomes_project 6 48662393 48687644 + MGP_C57BL6NJ_P0077871 Gm44965 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005240.1 MGP_C57BL6NJ_G0004466.1 mouse_genomes_project 6 131139982 131295914 + antisense antisense MGP_C57BL6NJ_T0077734.1 MGP_C57BL6NJ_G0031099.1 mouse_genomes_project 6 42340670 42341530 + MGP_C57BL6NJ_P0077734 protein_coding protein_coding MGP_C57BL6NJ_T0078753.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86409692 86411926 - MGP_C57BL6NJ_P0078753 Wbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078754.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86409698 86412214 - MGP_C57BL6NJ_P0078754 Wbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078755.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86409699 86412214 - Wbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078756.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86409961 86412042 - MGP_C57BL6NJ_P0078756 Wbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078757.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86410204 86410863 - MGP_C57BL6NJ_P0078757 Wbp1 protein_coding protein_coding MGP_C57BL6NJ_T0078758.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86410289 86411533 - Wbp1 protein_coding retained_intron MGP_C57BL6NJ_T0078759.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86410294 86411914 - Wbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0078760.1 MGP_C57BL6NJ_G0031360.1 mouse_genomes_project 6 86411213 86411929 - MGP_C57BL6NJ_P0078760 Wbp1 protein_coding protein_coding MGP_C57BL6NJ_T0077290.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142496 30268358 + MGP_C57BL6NJ_P0077290 Mkln1 protein_coding protein_coding MGP_C57BL6NJ_T0077291.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142589 30220078 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077292.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142590 30181157 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077293.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142597 30164594 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077294.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142606 30176025 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077295.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142606 30149646 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077296.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30142620 30178271 + Mkln1 protein_coding processed_transcript MGP_C57BL6NJ_T0077297.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30175839 30239341 + Mkln1 protein_coding processed_transcript MGP_C57BL6NJ_T0077298.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30175873 30223565 + Mkln1 protein_coding processed_transcript MGP_C57BL6NJ_T0077299.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30217308 30242623 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077300.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30226051 30229663 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0077301.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30239323 30259529 + MGP_C57BL6NJ_P0077301 Mkln1 protein_coding protein_coding MGP_C57BL6NJ_T0077302.1 MGP_C57BL6NJ_G0030985.1 mouse_genomes_project 6 30242550 30259408 + Mkln1 protein_coding retained_intron MGP_C57BL6NJ_T0000227.1 MGP_C57BL6NJ_G0000169.1 mouse_genomes_project 6 70465089 70465562 + MGP_C57BL6NJ_P0000227 Igkv12-98 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000228.1 MGP_C57BL6NJ_G0000169.1 mouse_genomes_project 6 70465089 70465562 + MGP_C57BL6NJ_P0000228 Igkv12-98 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000406.1 MGP_C57BL6NJ_G0000325.1 mouse_genomes_project 6 69978182 69978484 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079022.1 MGP_C57BL6NJ_G0031408.1 mouse_genomes_project 6 90022292 90026705 + MGP_C57BL6NJ_P0079022 Fam136a protein_coding protein_coding MGP_C57BL6NJ_T0079023.1 MGP_C57BL6NJ_G0031408.1 mouse_genomes_project 6 90022360 90023666 + Fam136a protein_coding retained_intron MGP_C57BL6NJ_T0079024.1 MGP_C57BL6NJ_G0031408.1 mouse_genomes_project 6 90022370 90025445 + MGP_C57BL6NJ_P0079024 Fam136a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077011.1 MGP_C57BL6NJ_G0030936.1 mouse_genomes_project 6 23010632 23035046 + MGP_C57BL6NJ_P0077011 Hyal4 protein_coding protein_coding MGP_C57BL6NJ_T0015926.1 MGP_C57BL6NJ_G0013971.1 mouse_genomes_project 6 106363229 106363685 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103307.1 MGP_C57BL6NJ_G0041100.1 mouse_genomes_project 6 140817976 140818878 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005116.1 MGP_C57BL6NJ_G0004384.1 mouse_genomes_project 6 52545882 52547065 + Gm15050 antisense antisense MGP_C57BL6NJ_T0015806.1 MGP_C57BL6NJ_G0013851.1 mouse_genomes_project 6 66872062 66873851 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015988.1 MGP_C57BL6NJ_G0014033.1 mouse_genomes_project 6 127765906 127766660 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078681.1 MGP_C57BL6NJ_G0031344.1 mouse_genomes_project 6 85854842 85949875 - Pole4 protein_coding processed_transcript MGP_C57BL6NJ_T0078682.1 MGP_C57BL6NJ_G0031344.1 mouse_genomes_project 6 85857705 85890280 - MGP_C57BL6NJ_P0078682 Pole4 protein_coding protein_coding MGP_C57BL6NJ_T0078683.1 MGP_C57BL6NJ_G0031344.1 mouse_genomes_project 6 85882088 85890339 - MGP_C57BL6NJ_P0078683 Pole4 protein_coding protein_coding MGP_C57BL6NJ_T0078684.1 MGP_C57BL6NJ_G0031344.1 mouse_genomes_project 6 85885252 85889928 - Pole4 protein_coding processed_transcript MGP_C57BL6NJ_T0100545.1 MGP_C57BL6NJ_G0038591.1 mouse_genomes_project 6 118518437 118518529 - Gm23244 snRNA snRNA MGP_C57BL6NJ_T0016033.1 MGP_C57BL6NJ_G0014078.1 mouse_genomes_project 6 136720083 136720525 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077666.1 MGP_C57BL6NJ_G0031076.1 mouse_genomes_project 6 41522463 41527414 + MGP_C57BL6NJ_P0077666 Sval3 protein_coding protein_coding MGP_C57BL6NJ_T0103293.1 MGP_C57BL6NJ_G0041086.1 mouse_genomes_project 6 137871229 137898090 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008761.1 MGP_C57BL6NJ_G0007082.1 mouse_genomes_project 6 48091627 48143620 - lincRNA lincRNA MGP_C57BL6NJ_T0011051.1 MGP_C57BL6NJ_G0009136.1 mouse_genomes_project 6 119250856 119250914 + Mir7042 miRNA miRNA MGP_C57BL6NJ_T0016042.1 MGP_C57BL6NJ_G0014087.1 mouse_genomes_project 6 138281023 138281253 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008808.1 MGP_C57BL6NJ_G0007120.1 mouse_genomes_project 6 73719883 73740127 + Gm44174 lincRNA lincRNA MGP_C57BL6NJ_T0080662.1 MGP_C57BL6NJ_G0031720.1 mouse_genomes_project 6 131839692 131853600 + MGP_C57BL6NJ_P0080662 Nop2 protein_coding protein_coding MGP_C57BL6NJ_T0080663.1 MGP_C57BL6NJ_G0031720.1 mouse_genomes_project 6 131839816 131842488 + MGP_C57BL6NJ_P0080663 Nop2 protein_coding protein_coding MGP_C57BL6NJ_T0015816.1 MGP_C57BL6NJ_G0013861.1 mouse_genomes_project 6 68110298 68111089 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002821.1 MGP_C57BL6NJ_G0002684.1 mouse_genomes_project 6 40599771 40600243 + MGP_C57BL6NJ_P0002821 Trbv14 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0077162.1 MGP_C57BL6NJ_G0030967.1 mouse_genomes_project 6 28338964 28341487 + Smo protein_coding retained_intron MGP_C57BL6NJ_T0077163.1 MGP_C57BL6NJ_G0030967.1 mouse_genomes_project 6 28339176 28370474 + MGP_C57BL6NJ_P0077163 Smo protein_coding protein_coding MGP_C57BL6NJ_T0011028.1 MGP_C57BL6NJ_G0009113.1 mouse_genomes_project 6 77127733 77127843 - Gm22254 miRNA miRNA MGP_C57BL6NJ_T0103240.1 MGP_C57BL6NJ_G0041034.1 mouse_genomes_project 6 42273041 42273389 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000286.1 MGP_C57BL6NJ_G0000213.1 mouse_genomes_project 6 72605917 72606484 - MGP_C57BL6NJ_P0000286 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000287.1 MGP_C57BL6NJ_G0000213.1 mouse_genomes_project 6 72605917 72606498 - MGP_C57BL6NJ_P0000287 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0005144.1 MGP_C57BL6NJ_G0004405.1 mouse_genomes_project 6 75535058 75543343 + Gm44031 antisense antisense MGP_C57BL6NJ_T0080592.1 MGP_C57BL6NJ_G0031711.1 mouse_genomes_project 6 131608855 131613121 - MGP_C57BL6NJ_P0080592 Ptms protein_coding protein_coding MGP_C57BL6NJ_T0080593.1 MGP_C57BL6NJ_G0031711.1 mouse_genomes_project 6 131608862 131609849 - Ptms protein_coding processed_transcript MGP_C57BL6NJ_T0080594.1 MGP_C57BL6NJ_G0031711.1 mouse_genomes_project 6 131608938 131618990 - Ptms protein_coding processed_transcript MGP_C57BL6NJ_T0080595.1 MGP_C57BL6NJ_G0031711.1 mouse_genomes_project 6 131609223 131610399 - Ptms protein_coding retained_intron MGP_C57BL6NJ_T0080596.1 MGP_C57BL6NJ_G0031711.1 mouse_genomes_project 6 131609815 131610704 - Ptms protein_coding processed_transcript MGP_C57BL6NJ_T0080191.1 MGP_C57BL6NJ_G0031632.1 mouse_genomes_project 6 125359648 125497236 - MGP_C57BL6NJ_P0080191 Wnt5b protein_coding protein_coding MGP_C57BL6NJ_T0080192.1 MGP_C57BL6NJ_G0031632.1 mouse_genomes_project 6 125360512 125377246 - MGP_C57BL6NJ_P0080192 Wnt5b protein_coding protein_coding MGP_C57BL6NJ_T0002245.1 MGP_C57BL6NJ_G0002136.1 mouse_genomes_project 6 106036958 106037917 - TEC TEC MGP_C57BL6NJ_T0103234.1 MGP_C57BL6NJ_G0041028.1 mouse_genomes_project 6 40242363 40318850 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100550.1 MGP_C57BL6NJ_G0038596.1 mouse_genomes_project 6 126571211 126571313 + Gm24391 snRNA snRNA MGP_C57BL6NJ_T0002087.1 MGP_C57BL6NJ_G0001978.1 mouse_genomes_project 6 32273634 32275246 + TEC TEC MGP_C57BL6NJ_T0002172.1 MGP_C57BL6NJ_G0002063.1 mouse_genomes_project 6 83382291 83383953 + TEC TEC MGP_C57BL6NJ_T0015660.1 MGP_C57BL6NJ_G0013705.1 mouse_genomes_project 6 14596855 14598551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000217.1 MGP_C57BL6NJ_G0000161.1 mouse_genomes_project 6 70083979 70086665 + MGP_C57BL6NJ_P0000217 Igkv1-117 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000449.1 MGP_C57BL6NJ_G0000368.1 mouse_genomes_project 6 71790018 71790336 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078637.1 MGP_C57BL6NJ_G0031330.1 mouse_genomes_project 6 81141487 81146809 + MGP_C57BL6NJ_P0078637 Gm5580 protein_coding protein_coding MGP_C57BL6NJ_T0011916.1 MGP_C57BL6NJ_G0010001.1 mouse_genomes_project 6 52650193 52650364 + Gm27866 misc_RNA misc_RNA MGP_C57BL6NJ_T0002275.1 MGP_C57BL6NJ_G0002165.1 mouse_genomes_project 6 127311402 127312911 - TEC TEC MGP_C57BL6NJ_T0078187.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56762790 57068424 - MGP_C57BL6NJ_P0078187 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078188.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56766492 57282835 - MGP_C57BL6NJ_P0078188 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078189.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56767102 57067887 - Pde1c protein_coding processed_transcript MGP_C57BL6NJ_T0078190.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56772538 57068551 - MGP_C57BL6NJ_P0078190 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078191.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56776618 57078540 - MGP_C57BL6NJ_P0078191 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078192.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56776733 56823946 - MGP_C57BL6NJ_P0078192 Pde1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078193.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56776786 57078559 - MGP_C57BL6NJ_P0078193 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078194.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56800234 57068343 - MGP_C57BL6NJ_P0078194 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078195.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56803796 57078588 - MGP_C57BL6NJ_P0078195 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078196.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56805506 57071079 - MGP_C57BL6NJ_P0078196 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078197.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56805960 57068398 - MGP_C57BL6NJ_P0078197 Pde1c protein_coding protein_coding MGP_C57BL6NJ_T0078198.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 56882407 57068406 - Pde1c protein_coding retained_intron MGP_C57BL6NJ_T0078199.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 57047782 57068345 - Pde1c protein_coding retained_intron MGP_C57BL6NJ_T0078200.1 MGP_C57BL6NJ_G0031214.1 mouse_genomes_project 6 57050999 57078561 - Pde1c protein_coding retained_intron MGP_C57BL6NJ_T0078367.1 MGP_C57BL6NJ_G0031271.1 mouse_genomes_project 6 67430898 67432304 + MGP_C57BL6NJ_P0078367 4930544G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0102302.1 MGP_C57BL6NJ_G0040273.1 mouse_genomes_project 6 129354657 129357753 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102303.1 MGP_C57BL6NJ_G0040273.1 mouse_genomes_project 6 129355072 129355342 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0078940.1 MGP_C57BL6NJ_G0031390.1 mouse_genomes_project 6 88876471 88917506 - MGP_C57BL6NJ_P0078940 protein_coding protein_coding MGP_C57BL6NJ_T0078941.1 MGP_C57BL6NJ_G0031390.1 mouse_genomes_project 6 88876476 88917576 - MGP_C57BL6NJ_P0078941 protein_coding protein_coding MGP_C57BL6NJ_T0078942.1 MGP_C57BL6NJ_G0031390.1 mouse_genomes_project 6 88879137 88883147 - protein_coding processed_transcript MGP_C57BL6NJ_T0002096.1 MGP_C57BL6NJ_G0001987.1 mouse_genomes_project 6 41230722 41234269 - TEC TEC MGP_C57BL6NJ_T0005242.1 MGP_C57BL6NJ_G0004468.1 mouse_genomes_project 6 131425390 131431649 + Gm20531 antisense antisense MGP_C57BL6NJ_T0002293.1 MGP_C57BL6NJ_G0002183.1 mouse_genomes_project 6 136708275 136708967 + TEC TEC MGP_C57BL6NJ_T0016052.1 MGP_C57BL6NJ_G0014097.1 mouse_genomes_project 6 139220287 139220400 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002198.1 MGP_C57BL6NJ_G0002089.1 mouse_genomes_project 6 91062728 91064835 - TEC TEC MGP_C57BL6NJ_T0018767.1 MGP_C57BL6NJ_G0016037.1 mouse_genomes_project 6 127172864 127178354 + Gm4651 processed_transcript antisense MGP_C57BL6NJ_T0018768.1 MGP_C57BL6NJ_G0016037.1 mouse_genomes_project 6 127172996 127174520 + Gm4651 processed_transcript retained_intron MGP_C57BL6NJ_T0002299.1 MGP_C57BL6NJ_G0002189.1 mouse_genomes_project 6 142254509 142255205 - TEC TEC MGP_C57BL6NJ_T0011063.1 MGP_C57BL6NJ_G0009148.1 mouse_genomes_project 6 131405341 131405410 - Mir200c miRNA miRNA MGP_C57BL6NJ_T0099503.1 MGP_C57BL6NJ_G0037556.1 mouse_genomes_project 6 131902469 131902750 - Gm28967 sense_intronic sense_intronic MGP_C57BL6NJ_T0080073.1 MGP_C57BL6NJ_G0031608.1 mouse_genomes_project 6 122256090 122258577 + MGP_C57BL6NJ_P0080073 protein_coding protein_coding MGP_C57BL6NJ_T0081012.1 MGP_C57BL6NJ_G0031820.1 mouse_genomes_project 6 140335567 140337301 + MGP_C57BL6NJ_P0081012 Prp2 protein_coding protein_coding MGP_C57BL6NJ_T0008920.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136346477 136385425 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008921.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136358906 136381451 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008922.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136362521 136385468 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008923.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136378718 136386202 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008924.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136378778 136385959 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0008925.1 MGP_C57BL6NJ_G0007213.1 mouse_genomes_project 6 136378883 136381460 - 2310001H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0100556.1 MGP_C57BL6NJ_G0038602.1 mouse_genomes_project 6 137211558 137211632 + Gm23977 snRNA snRNA MGP_C57BL6NJ_T0080325.1 MGP_C57BL6NJ_G0031652.1 mouse_genomes_project 6 127325850 127341713 + MGP_C57BL6NJ_P0080325 Tuba8 protein_coding protein_coding MGP_C57BL6NJ_T0000451.1 MGP_C57BL6NJ_G0000370.1 mouse_genomes_project 6 71839801 71840279 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015842.1 MGP_C57BL6NJ_G0013887.1 mouse_genomes_project 6 70849435 70849887 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079073.1 MGP_C57BL6NJ_G0031416.1 mouse_genomes_project 6 90334971 90356803 - MGP_C57BL6NJ_P0079073 Mxd1 protein_coding protein_coding MGP_C57BL6NJ_T0079074.1 MGP_C57BL6NJ_G0031416.1 mouse_genomes_project 6 90336945 90350747 - MGP_C57BL6NJ_P0079074 Mxd1 protein_coding protein_coding MGP_C57BL6NJ_T0079075.1 MGP_C57BL6NJ_G0031416.1 mouse_genomes_project 6 90338729 90356742 - MGP_C57BL6NJ_P0079075 Mxd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079076.1 MGP_C57BL6NJ_G0031416.1 mouse_genomes_project 6 90353843 90356759 - Mxd1 protein_coding retained_intron MGP_C57BL6NJ_T0008926.1 MGP_C57BL6NJ_G0007214.1 mouse_genomes_project 6 139560003 139562488 - lincRNA lincRNA MGP_C57BL6NJ_T0081008.1 MGP_C57BL6NJ_G0031816.1 mouse_genomes_project 6 139301883 139302813 - MGP_C57BL6NJ_P0081008 Tas2r114 protein_coding protein_coding MGP_C57BL6NJ_T0015636.1 MGP_C57BL6NJ_G0013681.1 mouse_genomes_project 6 4230315 4231260 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002164.1 MGP_C57BL6NJ_G0002055.1 mouse_genomes_project 6 80474262 80475749 - TEC TEC MGP_C57BL6NJ_T0103262.1 MGP_C57BL6NJ_G0041056.1 mouse_genomes_project 6 59402496 59402791 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0080360.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679841 128699125 - MGP_C57BL6NJ_P0080360 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080361.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679841 128699125 - MGP_C57BL6NJ_P0080361 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080362.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679848 128701762 - MGP_C57BL6NJ_P0080362 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080363.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679860 128701762 - MGP_C57BL6NJ_P0080363 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080364.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679860 128700974 - MGP_C57BL6NJ_P0080364 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080365.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128679960 128701755 - MGP_C57BL6NJ_P0080365 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080366.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128680413 128701722 - Phc1 protein_coding retained_intron MGP_C57BL6NJ_T0080367.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128680413 128701722 - MGP_C57BL6NJ_P0080367 Phc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080368.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128680414 128702428 - MGP_C57BL6NJ_P0080368 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080369.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128687664 128699029 - MGP_C57BL6NJ_P0080369 Phc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080370.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128688056 128702373 - MGP_C57BL6NJ_P0080370 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080371.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128694781 128697255 - Phc1 protein_coding retained_intron MGP_C57BL6NJ_T0080372.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128695504 128702091 - MGP_C57BL6NJ_P0080372 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080373.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128696243 128701762 - MGP_C57BL6NJ_P0080373 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080374.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128696244 128699406 - MGP_C57BL6NJ_P0080374 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0080375.1 MGP_C57BL6NJ_G0031662.1 mouse_genomes_project 6 128696248 128701737 - MGP_C57BL6NJ_P0080375 Phc1 protein_coding protein_coding MGP_C57BL6NJ_T0077548.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38702393 38733723 - MGP_C57BL6NJ_P0077548 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0077549.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38703731 38714235 - MGP_C57BL6NJ_P0077549 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0077550.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38705342 38733507 - MGP_C57BL6NJ_P0077550 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0077551.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38705348 38733798 - MGP_C57BL6NJ_P0077551 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0077552.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38705863 38714586 - Mkrn1 protein_coding retained_intron MGP_C57BL6NJ_T0077553.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38714315 38733197 - MGP_C57BL6NJ_P0077553 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0077554.1 MGP_C57BL6NJ_G0031034.1 mouse_genomes_project 6 38715043 38733738 - MGP_C57BL6NJ_P0077554 Mkrn1 protein_coding protein_coding MGP_C57BL6NJ_T0076763.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5730894 5879961 - MGP_C57BL6NJ_P0076763 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076764.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5730894 5880246 - MGP_C57BL6NJ_P0076764 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076765.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5730894 5880291 - MGP_C57BL6NJ_P0076765 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076766.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5730894 5858320 - MGP_C57BL6NJ_P0076766 Ica1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076767.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5731066 5746709 - Ica1 protein_coding processed_transcript MGP_C57BL6NJ_T0076768.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5758237 5879961 - MGP_C57BL6NJ_P0076768 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076769.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5758944 5775639 - MGP_C57BL6NJ_P0076769 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076770.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5758954 5880294 - MGP_C57BL6NJ_P0076770 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076771.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5758955 5837030 - MGP_C57BL6NJ_P0076771 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076772.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5830376 5880295 - Ica1 protein_coding processed_transcript MGP_C57BL6NJ_T0076773.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5849649 5871260 - MGP_C57BL6NJ_P0076773 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0076774.1 MGP_C57BL6NJ_G0030889.1 mouse_genomes_project 6 5854554 5879930 - MGP_C57BL6NJ_P0076774 Ica1 protein_coding protein_coding MGP_C57BL6NJ_T0002831.1 MGP_C57BL6NJ_G0002692.1 mouse_genomes_project 6 40686195 40686684 + MGP_C57BL6NJ_P0002831 Trbv26 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002832.1 MGP_C57BL6NJ_G0002692.1 mouse_genomes_project 6 40686215 40686684 + MGP_C57BL6NJ_P0002832 Trbv26 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0015965.1 MGP_C57BL6NJ_G0014010.1 mouse_genomes_project 6 120364941 120365329 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002142.1 MGP_C57BL6NJ_G0002033.1 mouse_genomes_project 6 73804766 73807770 - TEC TEC MGP_C57BL6NJ_T0002239.1 MGP_C57BL6NJ_G0002130.1 mouse_genomes_project 6 105295024 105296549 - TEC TEC MGP_C57BL6NJ_T0078168.1 MGP_C57BL6NJ_G0031207.1 mouse_genomes_project 6 55822319 55948929 + MGP_C57BL6NJ_P0078168 Fam188b protein_coding protein_coding MGP_C57BL6NJ_T0078169.1 MGP_C57BL6NJ_G0031207.1 mouse_genomes_project 6 55822319 55906398 + MGP_C57BL6NJ_P0078169 Fam188b protein_coding protein_coding MGP_C57BL6NJ_T0078170.1 MGP_C57BL6NJ_G0031207.1 mouse_genomes_project 6 55905927 55947022 + Fam188b protein_coding processed_transcript MGP_C57BL6NJ_T0077488.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37663747 37744585 + MGP_C57BL6NJ_P0077488 Ubn2 protein_coding protein_coding MGP_C57BL6NJ_T0077489.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37663970 37733626 + MGP_C57BL6NJ_P0077489 Ubn2 protein_coding protein_coding MGP_C57BL6NJ_T0077490.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37670327 37763855 + MGP_C57BL6NJ_P0077490 Ubn2 protein_coding protein_coding MGP_C57BL6NJ_T0077491.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37693802 37694582 + Ubn2 protein_coding retained_intron MGP_C57BL6NJ_T0077492.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37694740 37715902 + Ubn2 protein_coding retained_intron MGP_C57BL6NJ_T0077493.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37714190 37718508 + Ubn2 protein_coding retained_intron MGP_C57BL6NJ_T0077494.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37714288 37719392 + Ubn2 protein_coding processed_transcript MGP_C57BL6NJ_T0077495.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37715140 37733626 + Ubn2 protein_coding retained_intron MGP_C57BL6NJ_T0077496.1 MGP_C57BL6NJ_G0031023.1 mouse_genomes_project 6 37722051 37763889 + MGP_C57BL6NJ_P0077496 Ubn2 protein_coding protein_coding MGP_C57BL6NJ_T0078037.1 MGP_C57BL6NJ_G0031178.1 mouse_genomes_project 6 52551763 52555120 + MGP_C57BL6NJ_P0078037 5730596B20Rik protein_coding protein_coding MGP_C57BL6NJ_T0015811.1 MGP_C57BL6NJ_G0013856.1 mouse_genomes_project 6 67767465 67770928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002812.1 MGP_C57BL6NJ_G0002676.1 mouse_genomes_project 6 40516155 40516694 + MGP_C57BL6NJ_P0002812 Trbv3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0080171.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125138384 125260568 + MGP_C57BL6NJ_P0080171 Cacna2d4 protein_coding protein_coding MGP_C57BL6NJ_T0080172.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125138385 125181552 + Cacna2d4 protein_coding retained_intron MGP_C57BL6NJ_T0080173.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125138453 125258619 + MGP_C57BL6NJ_P0080173 Cacna2d4 protein_coding protein_coding MGP_C57BL6NJ_T0080174.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125150489 125207469 + Cacna2d4 protein_coding processed_transcript MGP_C57BL6NJ_T0080175.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125153717 125176456 + Cacna2d4 protein_coding processed_transcript MGP_C57BL6NJ_T0080176.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125172057 125175754 + Cacna2d4 protein_coding processed_transcript MGP_C57BL6NJ_T0080177.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125172258 125175797 + Cacna2d4 protein_coding retained_intron MGP_C57BL6NJ_T0080182.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125236821 125251062 + Cacna2d4 protein_coding processed_transcript MGP_C57BL6NJ_T0080183.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125236854 125244419 + Cacna2d4 protein_coding retained_intron MGP_C57BL6NJ_T0080184.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125236900 125258296 + MGP_C57BL6NJ_P0080184 Cacna2d4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080185.1 MGP_C57BL6NJ_G0031629.1 mouse_genomes_project 6 125238840 125254258 + Cacna2d4 protein_coding processed_transcript MGP_C57BL6NJ_T0015796.1 MGP_C57BL6NJ_G0013841.1 mouse_genomes_project 6 66393975 66394537 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002104.1 MGP_C57BL6NJ_G0001995.1 mouse_genomes_project 6 45115803 45117208 + TEC TEC MGP_C57BL6NJ_T0080931.1 MGP_C57BL6NJ_G0031785.1 mouse_genomes_project 6 136595086 136617945 - MGP_C57BL6NJ_P0080931 Clec1a protein_coding protein_coding MGP_C57BL6NJ_T0080932.1 MGP_C57BL6NJ_G0031785.1 mouse_genomes_project 6 136596135 136618081 - MGP_C57BL6NJ_P0080932 Clec1a protein_coding protein_coding MGP_C57BL6NJ_T0080933.1 MGP_C57BL6NJ_G0031785.1 mouse_genomes_project 6 136596206 136618065 - MGP_C57BL6NJ_P0080933 Clec1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101818.1 MGP_C57BL6NJ_G0039864.1 mouse_genomes_project 6 105099836 105099970 - Gm23234 snoRNA snoRNA MGP_C57BL6NJ_T0101803.1 MGP_C57BL6NJ_G0039849.1 mouse_genomes_project 6 70418597 70418730 + Gm25833 snoRNA snoRNA MGP_C57BL6NJ_T0011040.1 MGP_C57BL6NJ_G0009125.1 mouse_genomes_project 6 94653687 94653832 - Gm24816 miRNA miRNA MGP_C57BL6NJ_T0008864.1 MGP_C57BL6NJ_G0007164.1 mouse_genomes_project 6 102968117 102986026 - Gm44197 lincRNA lincRNA MGP_C57BL6NJ_T0081169.1 MGP_C57BL6NJ_G0031872.1 mouse_genomes_project 6 145171613 145177122 - MGP_C57BL6NJ_P0081169 Smco3 protein_coding protein_coding MGP_C57BL6NJ_T0081170.1 MGP_C57BL6NJ_G0031872.1 mouse_genomes_project 6 145172047 145177051 - MGP_C57BL6NJ_P0081170 Smco3 protein_coding protein_coding MGP_C57BL6NJ_T0081171.1 MGP_C57BL6NJ_G0031872.1 mouse_genomes_project 6 145172107 145177124 - MGP_C57BL6NJ_P0081171 Smco3 protein_coding protein_coding MGP_C57BL6NJ_T0002169.1 MGP_C57BL6NJ_G0002060.1 mouse_genomes_project 6 83277476 83279500 + TEC TEC MGP_C57BL6NJ_T0005226.1 MGP_C57BL6NJ_G0004452.1 mouse_genomes_project 6 119171482 119172450 - Gm43964 antisense antisense MGP_C57BL6NJ_T0016031.1 MGP_C57BL6NJ_G0014076.1 mouse_genomes_project 6 136012651 136013343 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008836.1 MGP_C57BL6NJ_G0007142.1 mouse_genomes_project 6 90167930 90168624 - Gm43936 lincRNA lincRNA MGP_C57BL6NJ_T0015790.1 MGP_C57BL6NJ_G0013835.1 mouse_genomes_project 6 64086663 64087189 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008908.1 MGP_C57BL6NJ_G0007201.1 mouse_genomes_project 6 133102499 133146501 - Gm10415 lincRNA lincRNA MGP_C57BL6NJ_T0081472.1 MGP_C57BL6NJ_G0031927.1 mouse_genomes_project 6 154944529 154951912 - MGP_C57BL6NJ_P0081472 Bhlhe41 protein_coding protein_coding MGP_C57BL6NJ_T0081473.1 MGP_C57BL6NJ_G0031927.1 mouse_genomes_project 6 154949858 154951656 - MGP_C57BL6NJ_P0081473 Bhlhe41 protein_coding protein_coding MGP_C57BL6NJ_T0081474.1 MGP_C57BL6NJ_G0031927.1 mouse_genomes_project 6 154951016 154951706 - Bhlhe41 protein_coding retained_intron MGP_C57BL6NJ_T0078380.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460506 68585875 + MGP_C57BL6NJ_P0078380 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078381.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460532 68582454 + MGP_C57BL6NJ_P0078381 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078382.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460540 68582798 + MGP_C57BL6NJ_P0078382 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078383.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460543 68582814 + MGP_C57BL6NJ_P0078383 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078384.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460546 68582426 + MGP_C57BL6NJ_P0078384 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078385.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460549 68583611 + MGP_C57BL6NJ_P0078385 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078386.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460565 68582373 + MGP_C57BL6NJ_P0078386 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078387.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68460658 68582671 + MGP_C57BL6NJ_P0078387 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0078388.1 MGP_C57BL6NJ_G0031281.1 mouse_genomes_project 6 68461000 68582092 + MGP_C57BL6NJ_P0078388 Gng12 protein_coding protein_coding MGP_C57BL6NJ_T0015657.1 MGP_C57BL6NJ_G0013702.1 mouse_genomes_project 6 13709668 13709942 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002715.1 MGP_C57BL6NJ_G0002593.1 mouse_genomes_project 6 41065457 41065504 + MGP_C57BL6NJ_P0002715 Trbj2-7 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002158.1 MGP_C57BL6NJ_G0002049.1 mouse_genomes_project 6 80193284 80194162 - TEC TEC MGP_C57BL6NJ_T0011009.1 MGP_C57BL6NJ_G0009094.1 mouse_genomes_project 6 29786290 29786378 - Mir29a miRNA miRNA MGP_C57BL6NJ_T0008744.1 MGP_C57BL6NJ_G0007074.1 mouse_genomes_project 6 34301491 34307464 + 1700065J11Rik lincRNA lincRNA MGP_C57BL6NJ_T0079445.1 MGP_C57BL6NJ_G0031493.1 mouse_genomes_project 6 96024534 96124258 + MGP_C57BL6NJ_P0079445 Fgd5 protein_coding protein_coding MGP_C57BL6NJ_T0079446.1 MGP_C57BL6NJ_G0031493.1 mouse_genomes_project 6 96117080 96125656 + Fgd5 protein_coding retained_intron MGP_C57BL6NJ_T0079447.1 MGP_C57BL6NJ_G0031493.1 mouse_genomes_project 6 96120839 96123867 + Fgd5 protein_coding retained_intron MGP_C57BL6NJ_T0015780.1 MGP_C57BL6NJ_G0013825.1 mouse_genomes_project 6 60118185 60118389 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008785.1 MGP_C57BL6NJ_G0007100.1 mouse_genomes_project 6 52923673 52927793 + Gm44028 lincRNA lincRNA MGP_C57BL6NJ_T0081649.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158665681 158677334 + Bicd1 protein_coding retained_intron MGP_C57BL6NJ_T0081650.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158665779 158822282 + MGP_C57BL6NJ_P0081650 Bicd1 protein_coding protein_coding MGP_C57BL6NJ_T0081651.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158665811 158816770 + MGP_C57BL6NJ_P0081651 Bicd1 protein_coding protein_coding MGP_C57BL6NJ_T0081652.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158665864 158765140 + Bicd1 protein_coding retained_intron MGP_C57BL6NJ_T0081653.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158666224 158815682 + MGP_C57BL6NJ_P0081653 Bicd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081654.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158666224 158815682 + MGP_C57BL6NJ_P0081654 Bicd1 protein_coding protein_coding MGP_C57BL6NJ_T0081655.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158774511 158779995 + Bicd1 protein_coding retained_intron MGP_C57BL6NJ_T0081656.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158777617 158781242 + MGP_C57BL6NJ_P0081656 Bicd1 protein_coding protein_coding MGP_C57BL6NJ_T0081657.1 MGP_C57BL6NJ_G0031955.1 mouse_genomes_project 6 158804785 158817808 + Bicd1 protein_coding retained_intron MGP_C57BL6NJ_T0080677.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131882298 131883576 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080678.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131882298 131907810 - MGP_C57BL6NJ_P0080678 Ncapd2 protein_coding protein_coding MGP_C57BL6NJ_T0080679.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131884130 131885382 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080680.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131885232 131886098 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080681.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131885343 131888201 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080682.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131886123 131888183 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080683.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131887651 131888821 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080684.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131887746 131891008 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080685.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131890118 131891660 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080686.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131891483 131893682 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080687.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131900404 131907712 - MGP_C57BL6NJ_P0080687 Ncapd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080688.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131900628 131902704 - Ncapd2 protein_coding retained_intron MGP_C57BL6NJ_T0080689.1 MGP_C57BL6NJ_G0031723.1 mouse_genomes_project 6 131901901 131907599 - MGP_C57BL6NJ_P0080689 Ncapd2 protein_coding protein_coding MGP_C57BL6NJ_T0101830.1 MGP_C57BL6NJ_G0039876.1 mouse_genomes_project 6 130473456 130473563 + Gm22763 snoRNA snoRNA MGP_C57BL6NJ_T0011906.1 MGP_C57BL6NJ_G0009991.1 mouse_genomes_project 6 52535104 52535247 + Gm27477 misc_RNA misc_RNA MGP_C57BL6NJ_T0080644.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131753371 131757877 + MGP_C57BL6NJ_P0080644 Acrbp protein_coding protein_coding MGP_C57BL6NJ_T0080645.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131753629 131755180 + MGP_C57BL6NJ_P0080645 Acrbp protein_coding protein_coding MGP_C57BL6NJ_T0080646.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131753641 131766964 + MGP_C57BL6NJ_P0080646 Acrbp protein_coding protein_coding MGP_C57BL6NJ_T0080647.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131753649 131755230 + MGP_C57BL6NJ_P0080647 Acrbp protein_coding protein_coding MGP_C57BL6NJ_T0080648.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131755536 131757876 + Acrbp protein_coding processed_transcript MGP_C57BL6NJ_T0080649.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131757484 131758899 + Acrbp protein_coding retained_intron MGP_C57BL6NJ_T0080650.1 MGP_C57BL6NJ_G0031717.1 mouse_genomes_project 6 131765885 131766939 + Acrbp protein_coding retained_intron MGP_C57BL6NJ_T0015765.1 MGP_C57BL6NJ_G0013810.1 mouse_genomes_project 6 53153886 53154187 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0076688.1 MGP_C57BL6NJ_G0030869.1 mouse_genomes_project 6 2056671 2085271 - MGP_C57BL6NJ_P0076688 Pon1 protein_coding protein_coding MGP_C57BL6NJ_T0076689.1 MGP_C57BL6NJ_G0030869.1 mouse_genomes_project 6 2057076 2085109 - MGP_C57BL6NJ_P0076689 Pon1 protein_coding protein_coding MGP_C57BL6NJ_T0076690.1 MGP_C57BL6NJ_G0030869.1 mouse_genomes_project 6 2061478 2085109 - MGP_C57BL6NJ_P0076690 Pon1 protein_coding protein_coding MGP_C57BL6NJ_T0076691.1 MGP_C57BL6NJ_G0030869.1 mouse_genomes_project 6 2076873 2085088 - Pon1 protein_coding retained_intron MGP_C57BL6NJ_T0078924.1 MGP_C57BL6NJ_G0031386.1 mouse_genomes_project 6 88602514 88620067 - Gm5878 protein_coding lincRNA MGP_C57BL6NJ_T0078925.1 MGP_C57BL6NJ_G0031386.1 mouse_genomes_project 6 88602514 88620036 - MGP_C57BL6NJ_P0078925 Gm5878 protein_coding protein_coding MGP_C57BL6NJ_T0102526.1 MGP_C57BL6NJ_G0040379.1 mouse_genomes_project 6 130453444 130503949 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102527.1 MGP_C57BL6NJ_G0040379.1 mouse_genomes_project 6 130476129 130499817 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0015913.1 MGP_C57BL6NJ_G0013958.1 mouse_genomes_project 6 100160573 100161762 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077636.1 MGP_C57BL6NJ_G0031062.1 mouse_genomes_project 6 40833424 40839159 + MGP_C57BL6NJ_P0077636 Try10 protein_coding protein_coding MGP_C57BL6NJ_T0000414.1 MGP_C57BL6NJ_G0000333.1 mouse_genomes_project 6 70349167 70349454 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078033.1 MGP_C57BL6NJ_G0031175.1 mouse_genomes_project 6 52535390 52537805 - MGP_C57BL6NJ_P0078033 Hoxa2 protein_coding protein_coding MGP_C57BL6NJ_T0077716.1 MGP_C57BL6NJ_G0031091.1 mouse_genomes_project 6 42026974 42027849 - MGP_C57BL6NJ_P0077716 Olfr457 protein_coding protein_coding MGP_C57BL6NJ_T0078616.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75762163 75790516 + MGP_C57BL6NJ_P0078616 Suclg1 protein_coding protein_coding MGP_C57BL6NJ_T0078617.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75762433 75777878 + MGP_C57BL6NJ_P0078617 Suclg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078618.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75762441 75790509 + MGP_C57BL6NJ_P0078618 Suclg1 protein_coding protein_coding MGP_C57BL6NJ_T0078619.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75762442 75771375 + Suclg1 protein_coding processed_transcript MGP_C57BL6NJ_T0078620.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75762449 75776727 + Suclg1 protein_coding retained_intron MGP_C57BL6NJ_T0078621.1 MGP_C57BL6NJ_G0031326.1 mouse_genomes_project 6 75774154 75777874 + Suclg1 protein_coding retained_intron MGP_C57BL6NJ_T0008879.1 MGP_C57BL6NJ_G0007174.1 mouse_genomes_project 6 110426821 110430652 - lincRNA lincRNA MGP_C57BL6NJ_T0011042.1 MGP_C57BL6NJ_G0009127.1 mouse_genomes_project 6 99027480 99027553 + Gm23364 miRNA miRNA MGP_C57BL6NJ_T0099138.1 MGP_C57BL6NJ_G0037202.1 mouse_genomes_project 6 117693444 117693544 - n-R5s165 rRNA rRNA MGP_C57BL6NJ_T0099275.1 MGP_C57BL6NJ_G0037339.1 mouse_genomes_project 6 131828603 131828739 + Gm23751 scaRNA scaRNA MGP_C57BL6NJ_T0015985.1 MGP_C57BL6NJ_G0014030.1 mouse_genomes_project 6 127681270 127681598 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005788.1 MGP_C57BL6NJ_G0004871.1 mouse_genomes_project 6 90554768 90555810 - 2610306M01Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0079506.1 MGP_C57BL6NJ_G0031507.1 mouse_genomes_project 6 99695131 99949854 - MGP_C57BL6NJ_P0079506 Suclg2 protein_coding protein_coding MGP_C57BL6NJ_T0079507.1 MGP_C57BL6NJ_G0031507.1 mouse_genomes_project 6 99790608 99868633 - Suclg2 protein_coding processed_transcript MGP_C57BL6NJ_T0079508.1 MGP_C57BL6NJ_G0031507.1 mouse_genomes_project 6 99818801 99882071 - MGP_C57BL6NJ_P0079508 Suclg2 protein_coding protein_coding MGP_C57BL6NJ_T0079509.1 MGP_C57BL6NJ_G0031507.1 mouse_genomes_project 6 99879365 99949879 - Suclg2 protein_coding retained_intron MGP_C57BL6NJ_T0077934.1 MGP_C57BL6NJ_G0031154.1 mouse_genomes_project 6 49098549 49103411 + MGP_C57BL6NJ_P0077934 Svs1 protein_coding protein_coding MGP_C57BL6NJ_T0076932.1 MGP_C57BL6NJ_G0030915.1 mouse_genomes_project 6 16697854 16715519 + MGP_C57BL6NJ_P0076932 Ankrd7 protein_coding protein_coding MGP_C57BL6NJ_T0076933.1 MGP_C57BL6NJ_G0030915.1 mouse_genomes_project 6 16697886 16715515 + MGP_C57BL6NJ_P0076933 Ankrd7 protein_coding protein_coding MGP_C57BL6NJ_T0000398.1 MGP_C57BL6NJ_G0000317.1 mouse_genomes_project 6 69415695 69415948 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079814.1 MGP_C57BL6NJ_G0031562.1 mouse_genomes_project 6 118948065 118959075 - MGP_C57BL6NJ_P0079814 Cidec protein_coding protein_coding MGP_C57BL6NJ_T0079815.1 MGP_C57BL6NJ_G0031562.1 mouse_genomes_project 6 118948067 118959071 - MGP_C57BL6NJ_P0079815 Cidec protein_coding protein_coding MGP_C57BL6NJ_T0079816.1 MGP_C57BL6NJ_G0031562.1 mouse_genomes_project 6 118948988 118958079 - MGP_C57BL6NJ_P0079816 Cidec protein_coding protein_coding MGP_C57BL6NJ_T0079817.1 MGP_C57BL6NJ_G0031562.1 mouse_genomes_project 6 118951834 118957928 - MGP_C57BL6NJ_P0079817 Cidec protein_coding protein_coding MGP_C57BL6NJ_T0077438.1 MGP_C57BL6NJ_G0031011.1 mouse_genomes_project 6 35768448 35869204 - MGP_C57BL6NJ_P0077438 Ptn protein_coding protein_coding MGP_C57BL6NJ_T0077439.1 MGP_C57BL6NJ_G0031011.1 mouse_genomes_project 6 35794104 35869163 - MGP_C57BL6NJ_P0077439 Ptn protein_coding protein_coding MGP_C57BL6NJ_T0002194.1 MGP_C57BL6NJ_G0002085.1 mouse_genomes_project 6 90870120 90872232 - TEC TEC MGP_C57BL6NJ_T0099494.1 MGP_C57BL6NJ_G0037547.1 mouse_genomes_project 6 39518567 39530982 + Gm26638 sense_intronic sense_intronic MGP_C57BL6NJ_T0008946.1 MGP_C57BL6NJ_G0007228.1 mouse_genomes_project 6 152131186 152134335 + D6Ertd474e lincRNA lincRNA MGP_C57BL6NJ_T0008947.1 MGP_C57BL6NJ_G0007228.1 mouse_genomes_project 6 152131186 152186232 + D6Ertd474e lincRNA lincRNA MGP_C57BL6NJ_T0008948.1 MGP_C57BL6NJ_G0007228.1 mouse_genomes_project 6 152131191 152187796 + D6Ertd474e lincRNA lincRNA MGP_C57BL6NJ_T0008949.1 MGP_C57BL6NJ_G0007228.1 mouse_genomes_project 6 152131191 152186597 + D6Ertd474e lincRNA lincRNA MGP_C57BL6NJ_T0008950.1 MGP_C57BL6NJ_G0007228.1 mouse_genomes_project 6 152176672 152186561 + D6Ertd474e lincRNA lincRNA MGP_C57BL6NJ_T0005091.1 MGP_C57BL6NJ_G0004365.1 mouse_genomes_project 6 33650212 33650447 - Npn2 antisense antisense MGP_C57BL6NJ_T0005092.1 MGP_C57BL6NJ_G0004365.1 mouse_genomes_project 6 33650371 33650446 - Npn2 antisense antisense MGP_C57BL6NJ_T0008731.1 MGP_C57BL6NJ_G0007064.1 mouse_genomes_project 6 30440299 30444211 - lincRNA lincRNA MGP_C57BL6NJ_T0005230.1 MGP_C57BL6NJ_G0004456.1 mouse_genomes_project 6 121081641 121095883 - Gm44079 antisense antisense MGP_C57BL6NJ_T0103238.1 MGP_C57BL6NJ_G0041032.1 mouse_genomes_project 6 41018454 41019985 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081404.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152735753 153132434 - MGP_C57BL6NJ_P0081404 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081405.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152735753 153132352 - MGP_C57BL6NJ_P0081405 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081406.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152738880 153132424 - MGP_C57BL6NJ_P0081406 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081407.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152740100 152856526 - MGP_C57BL6NJ_P0081407 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081408.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152740235 153132324 - MGP_C57BL6NJ_P0081408 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081409.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152746670 152856521 - Sox5 protein_coding processed_transcript MGP_C57BL6NJ_T0081410.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152750826 153774259 - Sox5 protein_coding retained_intron MGP_C57BL6NJ_T0081411.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152751902 152856517 - MGP_C57BL6NJ_P0081411 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081412.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152767979 152856508 - MGP_C57BL6NJ_P0081412 Sox5 protein_coding protein_coding MGP_C57BL6NJ_T0081413.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152814117 153127299 - Sox5 protein_coding retained_intron MGP_C57BL6NJ_T0081414.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 152931904 153132352 - Sox5 protein_coding retained_intron MGP_C57BL6NJ_T0081415.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 153021532 153774201 - Sox5 protein_coding processed_transcript MGP_C57BL6NJ_T0081416.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 153033540 153126929 - Sox5 protein_coding processed_transcript MGP_C57BL6NJ_T0081417.1 MGP_C57BL6NJ_G0031918.1 mouse_genomes_project 6 153071765 153132434 - Sox5 protein_coding retained_intron MGP_C57BL6NJ_T0008707.1 MGP_C57BL6NJ_G0007049.1 mouse_genomes_project 6 27535686 27592727 + Gm3294 lincRNA lincRNA MGP_C57BL6NJ_T0080816.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135354017 135392408 - MGP_C57BL6NJ_P0080816 Tulp3 protein_coding protein_coding MGP_C57BL6NJ_T0080817.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135355815 135358345 - Tulp3 protein_coding processed_transcript MGP_C57BL6NJ_T0080818.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135364407 135392398 - Tulp3 protein_coding retained_intron MGP_C57BL6NJ_T0080819.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135368480 135392372 - MGP_C57BL6NJ_P0080819 Tulp3 protein_coding protein_coding MGP_C57BL6NJ_T0080820.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135375260 135378881 - Tulp3 protein_coding retained_intron MGP_C57BL6NJ_T0080821.1 MGP_C57BL6NJ_G0031757.1 mouse_genomes_project 6 135376148 135392382 - MGP_C57BL6NJ_P0080821 Tulp3 protein_coding protein_coding MGP_C57BL6NJ_T0081011.1 MGP_C57BL6NJ_G0031819.1 mouse_genomes_project 6 140184745 140197300 - MGP_C57BL6NJ_P0081011 Gm8882 protein_coding protein_coding MGP_C57BL6NJ_T0080664.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854087 131871351 + Iffo1 protein_coding retained_intron MGP_C57BL6NJ_T0080665.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854087 131871351 + MGP_C57BL6NJ_P0080665 Iffo1 protein_coding protein_coding MGP_C57BL6NJ_T0080666.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854087 131871351 + MGP_C57BL6NJ_P0080666 Iffo1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080667.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854097 131871345 + MGP_C57BL6NJ_P0080667 Iffo1 protein_coding protein_coding MGP_C57BL6NJ_T0080668.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854112 131871345 + Iffo1 protein_coding retained_intron MGP_C57BL6NJ_T0080669.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854647 131871345 + MGP_C57BL6NJ_P0080669 Iffo1 protein_coding protein_coding MGP_C57BL6NJ_T0080670.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131854872 131871345 + Iffo1 protein_coding retained_intron MGP_C57BL6NJ_T0080671.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131857853 131860334 + Iffo1 protein_coding processed_transcript MGP_C57BL6NJ_T0080672.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131858374 131861577 + Iffo1 protein_coding retained_intron MGP_C57BL6NJ_T0080673.1 MGP_C57BL6NJ_G0031721.1 mouse_genomes_project 6 131862194 131870626 + Iffo1 protein_coding retained_intron MGP_C57BL6NJ_T0008804.1 MGP_C57BL6NJ_G0007116.1 mouse_genomes_project 6 73019744 73043332 + Gm43291 lincRNA lincRNA MGP_C57BL6NJ_T0078714.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337570 86340858 + MGP_C57BL6NJ_P0078714 Aup1 protein_coding protein_coding MGP_C57BL6NJ_T0078715.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337695 86340736 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078716.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337763 86339435 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078717.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337778 86339405 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078718.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337780 86338219 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078719.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337780 86340728 + MGP_C57BL6NJ_P0078719 Aup1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078720.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337785 86339484 + MGP_C57BL6NJ_P0078720 Aup1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078721.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337787 86338565 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078722.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337797 86340732 + MGP_C57BL6NJ_P0078722 Aup1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078723.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86337804 86339338 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078724.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86338440 86339167 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078725.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86338763 86339363 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078726.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86339459 86340694 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078727.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86339561 86339887 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078728.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86339897 86340443 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078729.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86339902 86340732 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0078730.1 MGP_C57BL6NJ_G0031351.1 mouse_genomes_project 6 86340270 86340726 + Aup1 protein_coding retained_intron MGP_C57BL6NJ_T0008815.1 MGP_C57BL6NJ_G0007127.1 mouse_genomes_project 6 76085323 76111754 - Gm31747 lincRNA lincRNA MGP_C57BL6NJ_T0079232.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92379011 92448791 - MGP_C57BL6NJ_P0079232 Kbtbd12 protein_coding protein_coding MGP_C57BL6NJ_T0079233.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92412678 92416812 - Kbtbd12 protein_coding retained_intron MGP_C57BL6NJ_T0079234.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92443695 92457391 - Kbtbd12 protein_coding retained_intron MGP_C57BL6NJ_T0079235.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92443974 92448467 - Kbtbd12 protein_coding processed_transcript MGP_C57BL6NJ_T0079236.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92447380 92457388 - Kbtbd12 protein_coding retained_intron MGP_C57BL6NJ_T0079237.1 MGP_C57BL6NJ_G0031448.1 mouse_genomes_project 6 92448561 92467888 - MGP_C57BL6NJ_P0079237 Kbtbd12 protein_coding protein_coding MGP_C57BL6NJ_T0080940.1 MGP_C57BL6NJ_G0031787.1 mouse_genomes_project 6 136679894 136684249 + MGP_C57BL6NJ_P0080940 Tmem52b protein_coding protein_coding MGP_C57BL6NJ_T0080941.1 MGP_C57BL6NJ_G0031787.1 mouse_genomes_project 6 136682660 136684338 + Tmem52b protein_coding retained_intron MGP_C57BL6NJ_T0080942.1 MGP_C57BL6NJ_G0031787.1 mouse_genomes_project 6 136683404 136684388 + Tmem52b protein_coding retained_intron MGP_C57BL6NJ_T0002077.1 MGP_C57BL6NJ_G0001968.1 mouse_genomes_project 6 27098977 27100849 + TEC TEC MGP_C57BL6NJ_T0076989.1 MGP_C57BL6NJ_G0030926.1 mouse_genomes_project 6 21858999 21860436 - MGP_C57BL6NJ_P0076989 Rnf133 protein_coding protein_coding MGP_C57BL6NJ_T0076990.1 MGP_C57BL6NJ_G0030926.1 mouse_genomes_project 6 21859004 21860337 - MGP_C57BL6NJ_P0076990 Rnf133 protein_coding protein_coding MGP_C57BL6NJ_T0101796.1 MGP_C57BL6NJ_G0039842.1 mouse_genomes_project 6 58696025 58696154 - Gm25726 snoRNA snoRNA MGP_C57BL6NJ_T0078674.1 MGP_C57BL6NJ_G0031342.1 mouse_genomes_project 6 85256210 85308025 + MGP_C57BL6NJ_P0078674 Eva1a protein_coding protein_coding MGP_C57BL6NJ_T0078675.1 MGP_C57BL6NJ_G0031342.1 mouse_genomes_project 6 85256857 85309229 + MGP_C57BL6NJ_P0078675 Eva1a protein_coding protein_coding MGP_C57BL6NJ_T0078676.1 MGP_C57BL6NJ_G0031342.1 mouse_genomes_project 6 85256922 85262385 + Eva1a protein_coding processed_transcript MGP_C57BL6NJ_T0078677.1 MGP_C57BL6NJ_G0031342.1 mouse_genomes_project 6 85267533 85308290 + MGP_C57BL6NJ_P0078677 Eva1a protein_coding protein_coding MGP_C57BL6NJ_T0002234.1 MGP_C57BL6NJ_G0002125.1 mouse_genomes_project 6 101952263 101953929 - TEC TEC MGP_C57BL6NJ_T0078806.1 MGP_C57BL6NJ_G0031368.1 mouse_genomes_project 6 86640969 86649854 + Mob1a protein_coding processed_transcript MGP_C57BL6NJ_T0078807.1 MGP_C57BL6NJ_G0031368.1 mouse_genomes_project 6 86640987 86647390 + MGP_C57BL6NJ_P0078807 Mob1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078808.1 MGP_C57BL6NJ_G0031368.1 mouse_genomes_project 6 86641031 86659186 + MGP_C57BL6NJ_P0078808 Mob1a protein_coding protein_coding MGP_C57BL6NJ_T0078809.1 MGP_C57BL6NJ_G0031368.1 mouse_genomes_project 6 86641205 86659111 + MGP_C57BL6NJ_P0078809 Mob1a protein_coding protein_coding MGP_C57BL6NJ_T0079318.1 MGP_C57BL6NJ_G0031462.1 mouse_genomes_project 6 93841056 93843732 - MGP_C57BL6NJ_P0079318 Vmn1r45 protein_coding protein_coding MGP_C57BL6NJ_T0005127.1 MGP_C57BL6NJ_G0004391.1 mouse_genomes_project 6 55259434 55260422 - Gm28402 antisense antisense MGP_C57BL6NJ_T0080376.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128818547 128838871 - MGP_C57BL6NJ_P0080376 Rimklb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080377.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128818549 128823984 - Rimklb protein_coding processed_transcript MGP_C57BL6NJ_T0080378.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128824352 128860039 - MGP_C57BL6NJ_P0080378 Rimklb protein_coding protein_coding MGP_C57BL6NJ_T0080379.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128825511 128838819 - MGP_C57BL6NJ_P0080379 Rimklb protein_coding protein_coding MGP_C57BL6NJ_T0080380.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128831503 128844838 - Rimklb protein_coding processed_transcript MGP_C57BL6NJ_T0080381.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128836453 128859973 - MGP_C57BL6NJ_P0080381 Rimklb protein_coding protein_coding MGP_C57BL6NJ_T0080382.1 MGP_C57BL6NJ_G0031663.1 mouse_genomes_project 6 128844821 128872866 - MGP_C57BL6NJ_P0080382 Rimklb protein_coding protein_coding MGP_C57BL6NJ_T0002710.1 MGP_C57BL6NJ_G0002588.1 mouse_genomes_project 6 41064401 41064451 + MGP_C57BL6NJ_P0002710 Trbj2-1 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002285.1 MGP_C57BL6NJ_G0002175.1 mouse_genomes_project 6 134741961 134744199 - TEC TEC MGP_C57BL6NJ_T0077309.1 MGP_C57BL6NJ_G0030988.1 mouse_genomes_project 6 30928443 31386555 - MGP_C57BL6NJ_P0077309 Plxna4 protein_coding protein_coding MGP_C57BL6NJ_T0077310.1 MGP_C57BL6NJ_G0030988.1 mouse_genomes_project 6 31007604 31009031 - Plxna4 protein_coding retained_intron MGP_C57BL6NJ_T0080524.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131453801 131457361 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080525.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131453803 131463318 - MGP_C57BL6NJ_P0080525 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0080526.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131453803 131463370 - MGP_C57BL6NJ_P0080526 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0080527.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131454113 131462034 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080528.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131454673 131463217 - MGP_C57BL6NJ_P0080528 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0080529.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131454906 131457035 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080530.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131454965 131457071 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080531.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131456405 131457670 - Eno2 protein_coding processed_transcript MGP_C57BL6NJ_T0080532.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131457515 131462027 - MGP_C57BL6NJ_P0080532 Eno2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080533.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131457618 131462073 - MGP_C57BL6NJ_P0080533 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0080534.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131459837 131463181 - MGP_C57BL6NJ_P0080534 Eno2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080535.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131459918 131462028 - MGP_C57BL6NJ_P0080535 Eno2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080536.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131459981 131463247 - MGP_C57BL6NJ_P0080536 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0080537.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131460466 131462034 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080538.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131460644 131463213 - Eno2 protein_coding retained_intron MGP_C57BL6NJ_T0080539.1 MGP_C57BL6NJ_G0031700.1 mouse_genomes_project 6 131461404 131463183 - MGP_C57BL6NJ_P0080539 Eno2 protein_coding protein_coding MGP_C57BL6NJ_T0015975.1 MGP_C57BL6NJ_G0014020.1 mouse_genomes_project 6 123260235 123260656 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008890.1 MGP_C57BL6NJ_G0007185.1 mouse_genomes_project 6 123198772 123201813 - Gm4640 lincRNA lincRNA MGP_C57BL6NJ_T0103300.1 MGP_C57BL6NJ_G0041093.1 mouse_genomes_project 6 140185126 140197271 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077861.1 MGP_C57BL6NJ_G0031134.1 mouse_genomes_project 6 48657710 48658850 + MGP_C57BL6NJ_P0077861 Gm5111 protein_coding protein_coding MGP_C57BL6NJ_T0077862.1 MGP_C57BL6NJ_G0031134.1 mouse_genomes_project 6 48657853 48658784 + Gm5111 protein_coding retained_intron MGP_C57BL6NJ_T0102292.1 MGP_C57BL6NJ_G0040268.1 mouse_genomes_project 6 41629901 41637513 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102293.1 MGP_C57BL6NJ_G0040268.1 mouse_genomes_project 6 41637072 41637432 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0015980.1 MGP_C57BL6NJ_G0014025.1 mouse_genomes_project 6 125988341 125988629 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015734.1 MGP_C57BL6NJ_G0013779.1 mouse_genomes_project 6 46695041 46695489 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008838.1 MGP_C57BL6NJ_G0007144.1 mouse_genomes_project 6 90375436 90376042 - Gm44214 lincRNA lincRNA MGP_C57BL6NJ_T0101794.1 MGP_C57BL6NJ_G0039840.1 mouse_genomes_project 6 57297442 57297574 - Gm24709 snoRNA snoRNA MGP_C57BL6NJ_T0011939.1 MGP_C57BL6NJ_G0010024.1 mouse_genomes_project 6 151057366 151057655 - Gm25430 misc_RNA misc_RNA MGP_C57BL6NJ_T0078012.1 MGP_C57BL6NJ_G0031171.1 mouse_genomes_project 6 51781128 51795069 + MGP_C57BL6NJ_P0078012 Cbx3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078013.1 MGP_C57BL6NJ_G0031171.1 mouse_genomes_project 6 51781164 51787652 + Cbx3 protein_coding retained_intron MGP_C57BL6NJ_T0078014.1 MGP_C57BL6NJ_G0031171.1 mouse_genomes_project 6 51781178 51782562 + Cbx3 protein_coding retained_intron MGP_C57BL6NJ_T0078015.1 MGP_C57BL6NJ_G0031171.1 mouse_genomes_project 6 51781247 51790991 + MGP_C57BL6NJ_P0078015 Cbx3 protein_coding protein_coding MGP_C57BL6NJ_T0078016.1 MGP_C57BL6NJ_G0031171.1 mouse_genomes_project 6 51789848 51792774 + Cbx3 protein_coding retained_intron MGP_C57BL6NJ_T0002881.1 MGP_C57BL6NJ_G0002735.1 mouse_genomes_project 6 40676837 40677304 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0078782.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86460199 86494405 + MGP_C57BL6NJ_P0078782 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078783.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86460230 86494406 + MGP_C57BL6NJ_P0078783 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078784.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86460283 86483860 + MGP_C57BL6NJ_P0078784 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078785.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86473863 86494259 + MGP_C57BL6NJ_P0078785 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078786.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86473866 86494405 + MGP_C57BL6NJ_P0078786 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078787.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86473890 86483431 + MGP_C57BL6NJ_P0078787 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078788.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86480223 86494406 + MGP_C57BL6NJ_P0078788 Dctn1 protein_coding protein_coding MGP_C57BL6NJ_T0078789.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86482888 86483885 + Dctn1 protein_coding retained_intron MGP_C57BL6NJ_T0078790.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86488632 86489869 + Dctn1 protein_coding retained_intron MGP_C57BL6NJ_T0078791.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86488831 86489576 + Dctn1 protein_coding retained_intron MGP_C57BL6NJ_T0078792.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86489390 86490357 + Dctn1 protein_coding retained_intron MGP_C57BL6NJ_T0078793.1 MGP_C57BL6NJ_G0031365.1 mouse_genomes_project 6 86491302 86492905 + Dctn1 protein_coding retained_intron MGP_C57BL6NJ_T0011072.1 MGP_C57BL6NJ_G0009157.1 mouse_genomes_project 6 143942834 143942939 + Gm22892 miRNA miRNA MGP_C57BL6NJ_T0078622.1 MGP_C57BL6NJ_G0031327.1 mouse_genomes_project 6 75969539 75970634 - MGP_C57BL6NJ_P0078622 4931417E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0078623.1 MGP_C57BL6NJ_G0031327.1 mouse_genomes_project 6 75969547 75970586 - 4931417E11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0078624.1 MGP_C57BL6NJ_G0031327.1 mouse_genomes_project 6 75969613 75970531 - 4931417E11Rik protein_coding transcribed_processed_pseudogene MGP_C57BL6NJ_T0081029.1 MGP_C57BL6NJ_G0031834.1 mouse_genomes_project 6 140706563 140707493 + MGP_C57BL6NJ_P0081029 Tas2r113 protein_coding protein_coding MGP_C57BL6NJ_T0100541.1 MGP_C57BL6NJ_G0038587.1 mouse_genomes_project 6 108401649 108401711 + Gm24784 snRNA snRNA MGP_C57BL6NJ_T0015753.1 MGP_C57BL6NJ_G0013798.1 mouse_genomes_project 6 49587676 49588500 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000200.1 MGP_C57BL6NJ_G0000149.1 mouse_genomes_project 6 69420797 69421511 + MGP_C57BL6NJ_P0000200 Igkv1-132 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0102288.1 MGP_C57BL6NJ_G0040267.1 mouse_genomes_project 6 33322163 33353725 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102289.1 MGP_C57BL6NJ_G0040267.1 mouse_genomes_project 6 33322324 33337724 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102290.1 MGP_C57BL6NJ_G0040267.1 mouse_genomes_project 6 33337692 33337865 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102291.1 MGP_C57BL6NJ_G0040267.1 mouse_genomes_project 6 33338132 33353726 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0080918.1 MGP_C57BL6NJ_G0031781.1 mouse_genomes_project 6 136500197 136520808 + MGP_C57BL6NJ_P0080918 Clec12a protein_coding protein_coding MGP_C57BL6NJ_T0080919.1 MGP_C57BL6NJ_G0031781.1 mouse_genomes_project 6 136507576 136514624 + Clec12a protein_coding retained_intron MGP_C57BL6NJ_T0080920.1 MGP_C57BL6NJ_G0031781.1 mouse_genomes_project 6 136507798 136526696 + MGP_C57BL6NJ_P0080920 Clec12a protein_coding protein_coding MGP_C57BL6NJ_T0080921.1 MGP_C57BL6NJ_G0031781.1 mouse_genomes_project 6 136517801 136525809 + Clec12a protein_coding retained_intron MGP_C57BL6NJ_T0015733.1 MGP_C57BL6NJ_G0013778.1 mouse_genomes_project 6 46541300 46542291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015791.1 MGP_C57BL6NJ_G0013836.1 mouse_genomes_project 6 64424747 64425438 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103241.1 MGP_C57BL6NJ_G0041035.1 mouse_genomes_project 6 42297016 42297080 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016025.1 MGP_C57BL6NJ_G0014070.1 mouse_genomes_project 6 135490754 135492028 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011888.1 MGP_C57BL6NJ_G0009973.1 mouse_genomes_project 6 15419004 15419188 + Gm27960 misc_RNA misc_RNA MGP_C57BL6NJ_T0077750.1 MGP_C57BL6NJ_G0031110.1 mouse_genomes_project 6 42829906 42830848 + MGP_C57BL6NJ_P0077750 Olfr435 protein_coding protein_coding MGP_C57BL6NJ_T0100532.1 MGP_C57BL6NJ_G0038578.1 mouse_genomes_project 6 84797532 84797691 + Gm26264 snRNA snRNA MGP_C57BL6NJ_T0080828.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135401073 135407106 + Foxm1 protein_coding processed_transcript MGP_C57BL6NJ_T0080829.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135401073 135414276 + MGP_C57BL6NJ_P0080829 Foxm1 protein_coding protein_coding MGP_C57BL6NJ_T0080830.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135403811 135412096 + MGP_C57BL6NJ_P0080830 Foxm1 protein_coding protein_coding MGP_C57BL6NJ_T0080831.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135404273 135411488 + MGP_C57BL6NJ_P0080831 Foxm1 protein_coding protein_coding MGP_C57BL6NJ_T0080832.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135405430 135411001 + MGP_C57BL6NJ_P0080832 Foxm1 protein_coding protein_coding MGP_C57BL6NJ_T0080833.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135405508 135410300 + Foxm1 protein_coding retained_intron MGP_C57BL6NJ_T0080834.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135407583 135409500 + Foxm1 protein_coding retained_intron MGP_C57BL6NJ_T0080835.1 MGP_C57BL6NJ_G0031759.1 mouse_genomes_project 6 135409088 135411312 + Foxm1 protein_coding retained_intron MGP_C57BL6NJ_T0101836.1 MGP_C57BL6NJ_G0039882.1 mouse_genomes_project 6 131902467 131902792 - Scarna10 snoRNA snoRNA MGP_C57BL6NJ_T0000425.1 MGP_C57BL6NJ_G0000344.1 mouse_genomes_project 6 70943479 70985987 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015647.1 MGP_C57BL6NJ_G0013692.1 mouse_genomes_project 6 8106399 8107300 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002327.1 MGP_C57BL6NJ_G0002217.1 mouse_genomes_project 6 157508385 157511930 - TEC TEC MGP_C57BL6NJ_T0081559.1 MGP_C57BL6NJ_G0031943.1 mouse_genomes_project 6 156357606 156369756 - MGP_C57BL6NJ_P0081559 Pthlh protein_coding protein_coding MGP_C57BL6NJ_T0081560.1 MGP_C57BL6NJ_G0031943.1 mouse_genomes_project 6 156357614 156369772 - MGP_C57BL6NJ_P0081560 Pthlh protein_coding protein_coding MGP_C57BL6NJ_T0016084.1 MGP_C57BL6NJ_G0014129.1 mouse_genomes_project 6 148682267 148682772 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077440.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35911135 36405388 - MGP_C57BL6NJ_P0077440 Dgki protein_coding protein_coding MGP_C57BL6NJ_T0077441.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35912094 36405598 - MGP_C57BL6NJ_P0077441 Dgki protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077442.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35912094 36405598 - MGP_C57BL6NJ_P0077442 Dgki protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077443.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35912094 36405598 - MGP_C57BL6NJ_P0077443 Dgki protein_coding protein_coding MGP_C57BL6NJ_T0077444.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35912269 36405051 - MGP_C57BL6NJ_P0077444 Dgki protein_coding protein_coding MGP_C57BL6NJ_T0077445.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 35986552 36112373 - Dgki protein_coding processed_transcript MGP_C57BL6NJ_T0077446.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 36115952 36145836 - Dgki protein_coding processed_transcript MGP_C57BL6NJ_T0077447.1 MGP_C57BL6NJ_G0031012.1 mouse_genomes_project 6 36326929 36405158 - Dgki protein_coding processed_transcript MGP_C57BL6NJ_T0079548.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102196939 102417902 + MGP_C57BL6NJ_P0079548 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0079549.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102196945 102340593 + Mitf protein_coding retained_intron MGP_C57BL6NJ_T0079550.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102196945 102420658 + MGP_C57BL6NJ_P0079550 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0079551.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102324710 102418016 + MGP_C57BL6NJ_P0079551 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0079552.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102339331 102418016 + MGP_C57BL6NJ_P0079552 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0079553.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102389744 102418016 + MGP_C57BL6NJ_P0079553 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0079554.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102389771 102417806 + MGP_C57BL6NJ_P0079554 Mitf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079555.1 MGP_C57BL6NJ_G0031517.1 mouse_genomes_project 6 102389873 102417484 + MGP_C57BL6NJ_P0079555 Mitf protein_coding protein_coding MGP_C57BL6NJ_T0002092.1 MGP_C57BL6NJ_G0001983.1 mouse_genomes_project 6 39421311 39423025 + TEC TEC MGP_C57BL6NJ_T0005290.1 MGP_C57BL6NJ_G0004509.1 mouse_genomes_project 6 156071234 156072892 - Gm44085 antisense antisense MGP_C57BL6NJ_T0015635.1 MGP_C57BL6NJ_G0013680.1 mouse_genomes_project 6 4226892 4230216 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008885.1 MGP_C57BL6NJ_G0007180.1 mouse_genomes_project 6 118425729 118428023 + Gm44081 lincRNA lincRNA MGP_C57BL6NJ_T0103254.1 MGP_C57BL6NJ_G0041048.1 mouse_genomes_project 6 58926842 58927752 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0080745.1 MGP_C57BL6NJ_G0031738.1 mouse_genomes_project 6 133474323 133478722 - MGP_C57BL6NJ_P0080745 Kcna1 protein_coding protein_coding MGP_C57BL6NJ_T0080746.1 MGP_C57BL6NJ_G0031738.1 mouse_genomes_project 6 133475590 133478739 - MGP_C57BL6NJ_P0080746 Kcna1 protein_coding protein_coding MGP_C57BL6NJ_T0080747.1 MGP_C57BL6NJ_G0031738.1 mouse_genomes_project 6 133477700 133480309 - Kcna1 protein_coding processed_transcript MGP_C57BL6NJ_T0102540.1 MGP_C57BL6NJ_G0040386.1 mouse_genomes_project 6 137944417 137965256 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0078453.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73926579 73950863 + Chmp3 protein_coding processed_transcript MGP_C57BL6NJ_T0078454.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73926603 73973688 + MGP_C57BL6NJ_P0078454 Chmp3 protein_coding protein_coding MGP_C57BL6NJ_T0078455.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73926656 73971692 + MGP_C57BL6NJ_P0078455 Chmp3 protein_coding protein_coding MGP_C57BL6NJ_T0078456.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73926656 73950882 + MGP_C57BL6NJ_P0078456 Chmp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078457.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73927080 73968027 + Chmp3 protein_coding processed_transcript MGP_C57BL6NJ_T0078458.1 MGP_C57BL6NJ_G0031299.1 mouse_genomes_project 6 73971488 73973715 + Chmp3 protein_coding retained_intron MGP_C57BL6NJ_T0080690.1 MGP_C57BL6NJ_G0031724.1 mouse_genomes_project 6 131907909 131909667 + Mrpl51 protein_coding processed_transcript MGP_C57BL6NJ_T0080691.1 MGP_C57BL6NJ_G0031724.1 mouse_genomes_project 6 131908273 131912378 + MGP_C57BL6NJ_P0080691 Mrpl51 protein_coding protein_coding MGP_C57BL6NJ_T0080692.1 MGP_C57BL6NJ_G0031724.1 mouse_genomes_project 6 131908325 131908987 + Mrpl51 protein_coding retained_intron MGP_C57BL6NJ_T0015655.1 MGP_C57BL6NJ_G0013700.1 mouse_genomes_project 6 11586230 11586535 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015894.1 MGP_C57BL6NJ_G0013939.1 mouse_genomes_project 6 89932172 89933180 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080006.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121598639 121606930 + MGP_C57BL6NJ_P0080006 Rho protein_coding protein_coding MGP_C57BL6NJ_T0080007.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121598816 121600992 + Rho protein_coding retained_intron MGP_C57BL6NJ_T0080008.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121599447 121603601 + MGP_C57BL6NJ_P0080008 Rho protein_coding protein_coding MGP_C57BL6NJ_T0080009.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121601234 121603846 + MGP_C57BL6NJ_P0080009 Rho protein_coding protein_coding MGP_C57BL6NJ_T0080010.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121601265 121603966 + MGP_C57BL6NJ_P0080010 Rho protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080011.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121601631 121602938 + Rho protein_coding retained_intron MGP_C57BL6NJ_T0080012.1 MGP_C57BL6NJ_G0031598.1 mouse_genomes_project 6 121602090 121603122 + Rho protein_coding retained_intron MGP_C57BL6NJ_T0079307.1 MGP_C57BL6NJ_G0031456.1 mouse_genomes_project 6 93275421 93489685 - MGP_C57BL6NJ_P0079307 Chchd6 protein_coding protein_coding MGP_C57BL6NJ_T0079308.1 MGP_C57BL6NJ_G0031456.1 mouse_genomes_project 6 93275426 93489685 - MGP_C57BL6NJ_P0079308 Chchd6 protein_coding protein_coding MGP_C57BL6NJ_T0079309.1 MGP_C57BL6NJ_G0031456.1 mouse_genomes_project 6 93310353 93489637 - Chchd6 protein_coding retained_intron MGP_C57BL6NJ_T0079310.1 MGP_C57BL6NJ_G0031456.1 mouse_genomes_project 6 93465370 93489644 - MGP_C57BL6NJ_P0079310 Chchd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015784.1 MGP_C57BL6NJ_G0013829.1 mouse_genomes_project 6 62162276 62163162 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002316.1 MGP_C57BL6NJ_G0002206.1 mouse_genomes_project 6 152899339 152901467 - TEC TEC MGP_C57BL6NJ_T0078846.1 MGP_C57BL6NJ_G0031375.1 mouse_genomes_project 6 87033654 87040297 - MGP_C57BL6NJ_P0078846 Cd207 protein_coding protein_coding MGP_C57BL6NJ_T0077375.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33704806 33774458 + Agbl3 protein_coding retained_intron MGP_C57BL6NJ_T0077376.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33704806 33785182 + MGP_C57BL6NJ_P0077376 Agbl3 protein_coding protein_coding MGP_C57BL6NJ_T0077377.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33704806 33785182 + MGP_C57BL6NJ_P0077377 Agbl3 protein_coding protein_coding MGP_C57BL6NJ_T0077378.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33704816 33729036 + MGP_C57BL6NJ_P0077378 Agbl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077379.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33704826 33724289 + Agbl3 protein_coding retained_intron MGP_C57BL6NJ_T0077380.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705222 33786709 + MGP_C57BL6NJ_P0077380 Agbl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077381.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705249 33730878 + Agbl3 protein_coding retained_intron MGP_C57BL6NJ_T0077382.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705249 33710094 + MGP_C57BL6NJ_P0077382 Agbl3 protein_coding protein_coding MGP_C57BL6NJ_T0077383.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705250 33726857 + Agbl3 protein_coding retained_intron MGP_C57BL6NJ_T0077384.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705263 33710019 + MGP_C57BL6NJ_P0077384 Agbl3 protein_coding protein_coding MGP_C57BL6NJ_T0077385.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705264 33710058 + MGP_C57BL6NJ_P0077385 Agbl3 protein_coding protein_coding MGP_C57BL6NJ_T0077386.1 MGP_C57BL6NJ_G0030999.1 mouse_genomes_project 6 33705338 33785153 + MGP_C57BL6NJ_P0077386 Agbl3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000413.1 MGP_C57BL6NJ_G0000332.1 mouse_genomes_project 6 70218229 70219024 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079965.1 MGP_C57BL6NJ_G0031590.1 mouse_genomes_project 6 121241333 121263050 + MGP_C57BL6NJ_P0079965 Mkrn2 protein_coding protein_coding MGP_C57BL6NJ_T0079966.1 MGP_C57BL6NJ_G0031590.1 mouse_genomes_project 6 121242342 121253840 + Mkrn2 protein_coding processed_transcript MGP_C57BL6NJ_T0079967.1 MGP_C57BL6NJ_G0031590.1 mouse_genomes_project 6 121251749 121252827 + Mkrn2 protein_coding retained_intron MGP_C57BL6NJ_T0000395.1 MGP_C57BL6NJ_G0000314.1 mouse_genomes_project 6 69230389 69230686 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0079205.1 MGP_C57BL6NJ_G0031443.1 mouse_genomes_project 6 91972699 91988142 + MGP_C57BL6NJ_P0079205 Gata2 protein_coding protein_coding MGP_C57BL6NJ_T0079206.1 MGP_C57BL6NJ_G0031443.1 mouse_genomes_project 6 91978421 91988140 + MGP_C57BL6NJ_P0079206 Gata2 protein_coding protein_coding MGP_C57BL6NJ_T0079207.1 MGP_C57BL6NJ_G0031443.1 mouse_genomes_project 6 91978421 91979749 + MGP_C57BL6NJ_P0079207 Gata2 protein_coding protein_coding MGP_C57BL6NJ_T0079208.1 MGP_C57BL6NJ_G0031443.1 mouse_genomes_project 6 91981004 91982727 + Gata2 protein_coding retained_intron MGP_C57BL6NJ_T0079209.1 MGP_C57BL6NJ_G0031443.1 mouse_genomes_project 6 91985554 91986881 + Gata2 protein_coding retained_intron MGP_C57BL6NJ_T0000063.1 MGP_C57BL6NJ_G0000051.1 mouse_genomes_project 6 42685834 42686414 - MGP_C57BL6NJ_P0000063 Gm20730 IG_LV_gene IG_LV_gene MGP_C57BL6NJ_T0076660.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512636 1586545 - MGP_C57BL6NJ_P0076660 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076661.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512636 1586573 - MGP_C57BL6NJ_P0076661 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076662.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512640 1586576 - MGP_C57BL6NJ_P0076662 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076663.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512640 1586526 - MGP_C57BL6NJ_P0076663 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076664.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512670 1586485 - MGP_C57BL6NJ_P0076664 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076665.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512704 1586557 - MGP_C57BL6NJ_P0076665 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076666.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1512704 1586493 - MGP_C57BL6NJ_P0076666 Sgce protein_coding protein_coding MGP_C57BL6NJ_T0076667.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1515996 1586526 - Sgce protein_coding retained_intron MGP_C57BL6NJ_T0076668.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1528017 1586449 - Sgce protein_coding retained_intron MGP_C57BL6NJ_T0076669.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1530833 1586439 - Sgce protein_coding processed_transcript MGP_C57BL6NJ_T0076670.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1531005 1586432 - MGP_C57BL6NJ_P0076670 Sgce protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076671.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1547006 1551422 - Sgce protein_coding retained_intron MGP_C57BL6NJ_T0076672.1 MGP_C57BL6NJ_G0030866.1 mouse_genomes_project 6 1576522 1579588 - Sgce protein_coding retained_intron MGP_C57BL6NJ_T0015941.1 MGP_C57BL6NJ_G0013986.1 mouse_genomes_project 6 113304259 113306611 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008820.1 MGP_C57BL6NJ_G0007132.1 mouse_genomes_project 6 85101268 85111717 - 1700009C05Rik lincRNA lincRNA MGP_C57BL6NJ_T0005214.1 MGP_C57BL6NJ_G0004445.1 mouse_genomes_project 6 113759937 113850312 - 0610040F04Rik antisense antisense MGP_C57BL6NJ_T0005215.1 MGP_C57BL6NJ_G0004445.1 mouse_genomes_project 6 113794911 113798574 - 0610040F04Rik antisense antisense MGP_C57BL6NJ_T0079329.1 MGP_C57BL6NJ_G0031469.1 mouse_genomes_project 6 94139591 94140481 + MGP_C57BL6NJ_P0079329 V1ra8 protein_coding protein_coding MGP_C57BL6NJ_T0079488.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98685032 98792603 + MGP_C57BL6NJ_P0079488 Slc25a26 protein_coding protein_coding MGP_C57BL6NJ_T0079489.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98685034 98791985 + MGP_C57BL6NJ_P0079489 Slc25a26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079490.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98685070 98792603 + MGP_C57BL6NJ_P0079490 Slc25a26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079491.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98685250 98695561 + Slc25a26 protein_coding processed_transcript MGP_C57BL6NJ_T0079492.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98692277 98784048 + MGP_C57BL6NJ_P0079492 Slc25a26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079493.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98720474 98791793 + Slc25a26 protein_coding processed_transcript MGP_C57BL6NJ_T0079494.1 MGP_C57BL6NJ_G0031503.1 mouse_genomes_project 6 98766200 98791513 + Slc25a26 protein_coding processed_transcript MGP_C57BL6NJ_T0081304.1 MGP_C57BL6NJ_G0031895.1 mouse_genomes_project 6 149988370 150261532 + MGP_C57BL6NJ_P0081304 Pde3a protein_coding protein_coding MGP_C57BL6NJ_T0081305.1 MGP_C57BL6NJ_G0031895.1 mouse_genomes_project 6 149989067 150221352 + Pde3a protein_coding retained_intron MGP_C57BL6NJ_T0016002.1 MGP_C57BL6NJ_G0014047.1 mouse_genomes_project 6 130802327 130803261 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103286.1 MGP_C57BL6NJ_G0041080.1 mouse_genomes_project 6 135723087 135736956 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103287.1 MGP_C57BL6NJ_G0041080.1 mouse_genomes_project 6 135723110 135732168 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016006.1 MGP_C57BL6NJ_G0014051.1 mouse_genomes_project 6 131986401 131986699 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005192.1 MGP_C57BL6NJ_G0004431.1 mouse_genomes_project 6 92673668 92678086 + Gm15612 antisense antisense MGP_C57BL6NJ_T0000420.1 MGP_C57BL6NJ_G0000339.1 mouse_genomes_project 6 70809921 70810317 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0008686.1 MGP_C57BL6NJ_G0007034.1 mouse_genomes_project 6 4803840 4814025 + Gm44217 lincRNA lincRNA MGP_C57BL6NJ_T0015743.1 MGP_C57BL6NJ_G0013788.1 mouse_genomes_project 6 48911626 48914630 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080435.1 MGP_C57BL6NJ_G0031679.1 mouse_genomes_project 6 129640144 129676423 + MGP_C57BL6NJ_P0080435 Clec4b2 protein_coding protein_coding MGP_C57BL6NJ_T0015893.1 MGP_C57BL6NJ_G0013938.1 mouse_genomes_project 6 89551055 89551832 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103276.1 MGP_C57BL6NJ_G0041070.1 mouse_genomes_project 6 93907244 93914222 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081041.1 MGP_C57BL6NJ_G0031843.1 mouse_genomes_project 6 141853348 141857224 - MGP_C57BL6NJ_P0081041 Kap protein_coding protein_coding MGP_C57BL6NJ_T0081042.1 MGP_C57BL6NJ_G0031843.1 mouse_genomes_project 6 141853451 141857135 - MGP_C57BL6NJ_P0081042 Kap protein_coding protein_coding MGP_C57BL6NJ_T0002185.1 MGP_C57BL6NJ_G0002076.1 mouse_genomes_project 6 89679138 89680963 + TEC TEC MGP_C57BL6NJ_T0077918.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48945696 48947108 + MGP_C57BL6NJ_P0077918 Tmem176a protein_coding protein_coding MGP_C57BL6NJ_T0077919.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48946289 48950647 + MGP_C57BL6NJ_P0077919 Tmem176a protein_coding protein_coding MGP_C57BL6NJ_T0077920.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48946299 48953781 + MGP_C57BL6NJ_P0077920 Tmem176a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077921.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48946325 48950139 + Tmem176a protein_coding retained_intron MGP_C57BL6NJ_T0077922.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48946360 48950143 + MGP_C57BL6NJ_P0077922 Tmem176a protein_coding protein_coding MGP_C57BL6NJ_T0077923.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48946547 48949553 + MGP_C57BL6NJ_P0077923 Tmem176a protein_coding protein_coding MGP_C57BL6NJ_T0077924.1 MGP_C57BL6NJ_G0031150.1 mouse_genomes_project 6 48947366 48948370 + MGP_C57BL6NJ_P0077924 Tmem176a protein_coding protein_coding MGP_C57BL6NJ_T0076692.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2116811 2153730 - MGP_C57BL6NJ_P0076692 Pon3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0076693.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2116811 2153783 - MGP_C57BL6NJ_P0076693 Pon3 protein_coding protein_coding MGP_C57BL6NJ_T0076694.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2127671 2153732 - MGP_C57BL6NJ_P0076694 Pon3 protein_coding protein_coding MGP_C57BL6NJ_T0076695.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2133589 2153711 - Pon3 protein_coding retained_intron MGP_C57BL6NJ_T0076696.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2134032 2152363 - Pon3 protein_coding retained_intron MGP_C57BL6NJ_T0076697.1 MGP_C57BL6NJ_G0030870.1 mouse_genomes_project 6 2152076 2153064 - Pon3 protein_coding processed_transcript MGP_C57BL6NJ_T0015904.1 MGP_C57BL6NJ_G0013949.1 mouse_genomes_project 6 97788734 97789608 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002319.1 MGP_C57BL6NJ_G0002209.1 mouse_genomes_project 6 154346537 154347411 + TEC TEC MGP_C57BL6NJ_T0015726.1 MGP_C57BL6NJ_G0013771.1 mouse_genomes_project 6 42838195 42838618 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078017.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51840074 51919430 + MGP_C57BL6NJ_P0078017 Snx10 protein_coding protein_coding MGP_C57BL6NJ_T0078018.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51840155 51895443 + Snx10 protein_coding retained_intron MGP_C57BL6NJ_T0078019.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51840426 51907506 + MGP_C57BL6NJ_P0078019 Snx10 protein_coding protein_coding MGP_C57BL6NJ_T0078020.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51840451 51917187 + MGP_C57BL6NJ_P0078020 Snx10 protein_coding protein_coding MGP_C57BL6NJ_T0078021.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51861984 51919421 + MGP_C57BL6NJ_P0078021 Snx10 protein_coding protein_coding MGP_C57BL6NJ_T0078022.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51861985 51917823 + MGP_C57BL6NJ_P0078022 Snx10 protein_coding protein_coding MGP_C57BL6NJ_T0078023.1 MGP_C57BL6NJ_G0031172.1 mouse_genomes_project 6 51862027 51917794 + MGP_C57BL6NJ_P0078023 Snx10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0000250.1 MGP_C57BL6NJ_G0000187.1 mouse_genomes_project 6 71533089 71533381 - MGP_C57BL6NJ_P0000250 Igkv4-58 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000251.1 MGP_C57BL6NJ_G0000187.1 mouse_genomes_project 6 71533089 71533622 - MGP_C57BL6NJ_P0000251 Igkv4-58 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0015997.1 MGP_C57BL6NJ_G0014042.1 mouse_genomes_project 6 129585774 129585925 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081468.1 MGP_C57BL6NJ_G0031926.1 mouse_genomes_project 6 154821735 154902500 + MGP_C57BL6NJ_P0081468 Rassf8 protein_coding protein_coding MGP_C57BL6NJ_T0081469.1 MGP_C57BL6NJ_G0031926.1 mouse_genomes_project 6 154825558 154896609 + MGP_C57BL6NJ_P0081469 Rassf8 protein_coding protein_coding MGP_C57BL6NJ_T0081470.1 MGP_C57BL6NJ_G0031926.1 mouse_genomes_project 6 154888415 154899005 + MGP_C57BL6NJ_P0081470 Rassf8 protein_coding protein_coding MGP_C57BL6NJ_T0081471.1 MGP_C57BL6NJ_G0031926.1 mouse_genomes_project 6 154901364 154902495 + MGP_C57BL6NJ_P0081471 Rassf8 protein_coding protein_coding MGP_C57BL6NJ_T0081567.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157319990 157353980 - MGP_C57BL6NJ_P0081567 Ergic2 protein_coding protein_coding MGP_C57BL6NJ_T0081568.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157322127 157353713 - MGP_C57BL6NJ_P0081568 Ergic2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081569.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157322221 157328992 - MGP_C57BL6NJ_P0081569 Ergic2 protein_coding protein_coding MGP_C57BL6NJ_T0081570.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157322276 157324120 - MGP_C57BL6NJ_P0081570 Ergic2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081571.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157322556 157336116 - MGP_C57BL6NJ_P0081571 Ergic2 protein_coding protein_coding MGP_C57BL6NJ_T0081572.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157322839 157337101 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081573.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157323957 157330606 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081574.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157324609 157353980 - Ergic2 protein_coding processed_transcript MGP_C57BL6NJ_T0081575.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157328936 157337386 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081576.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157330399 157336099 - Ergic2 protein_coding processed_transcript MGP_C57BL6NJ_T0081577.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157330445 157353628 - MGP_C57BL6NJ_P0081577 Ergic2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081578.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157331818 157337203 - Ergic2 protein_coding processed_transcript MGP_C57BL6NJ_T0081579.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157336053 157344397 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081580.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157340564 157353583 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081581.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157343099 157353628 - MGP_C57BL6NJ_P0081581 Ergic2 protein_coding protein_coding MGP_C57BL6NJ_T0081582.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157343854 157353627 - Ergic2 protein_coding retained_intron MGP_C57BL6NJ_T0081583.1 MGP_C57BL6NJ_G0031946.1 mouse_genomes_project 6 157344307 157353611 - Ergic2 protein_coding processed_transcript MGP_C57BL6NJ_T0103289.1 MGP_C57BL6NJ_G0041082.1 mouse_genomes_project 6 136168300 136169140 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005097.1 MGP_C57BL6NJ_G0004370.1 mouse_genomes_project 6 38395683 38425909 + 4930599N23Rik antisense antisense MGP_C57BL6NJ_T0002257.1 MGP_C57BL6NJ_G0002148.1 mouse_genomes_project 6 118529811 118531938 - TEC TEC MGP_C57BL6NJ_T0078953.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88997896 89002273 - MGP_C57BL6NJ_P0078953 Pradc1 protein_coding protein_coding MGP_C57BL6NJ_T0078954.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998127 89002295 - Pradc1 protein_coding retained_intron MGP_C57BL6NJ_T0078955.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998128 89002342 - MGP_C57BL6NJ_P0078955 Pradc1 protein_coding protein_coding MGP_C57BL6NJ_T0078956.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998301 89003039 - Pradc1 protein_coding processed_transcript MGP_C57BL6NJ_T0078957.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998626 89002318 - Pradc1 protein_coding processed_transcript MGP_C57BL6NJ_T0078958.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998641 89002350 - Pradc1 protein_coding retained_intron MGP_C57BL6NJ_T0078959.1 MGP_C57BL6NJ_G0031393.1 mouse_genomes_project 6 88998773 89002307 - Pradc1 protein_coding processed_transcript MGP_C57BL6NJ_T0078222.1 MGP_C57BL6NJ_G0031220.1 mouse_genomes_project 6 57670369 57674761 + Vmn1r4 protein_coding retained_intron MGP_C57BL6NJ_T0078223.1 MGP_C57BL6NJ_G0031220.1 mouse_genomes_project 6 57670376 57704809 + MGP_C57BL6NJ_P0078223 Vmn1r4 protein_coding protein_coding MGP_C57BL6NJ_T0078224.1 MGP_C57BL6NJ_G0031220.1 mouse_genomes_project 6 57703174 57704208 + MGP_C57BL6NJ_P0078224 Vmn1r4 protein_coding protein_coding MGP_C57BL6NJ_T0011037.1 MGP_C57BL6NJ_G0009122.1 mouse_genomes_project 6 90256075 90256137 - Gm22184 miRNA miRNA MGP_C57BL6NJ_T0002167.1 MGP_C57BL6NJ_G0002058.1 mouse_genomes_project 6 80894606 80896659 + TEC TEC MGP_C57BL6NJ_T0002101.1 MGP_C57BL6NJ_G0001992.1 mouse_genomes_project 6 44999562 45002104 + TEC TEC MGP_C57BL6NJ_T0005243.1 MGP_C57BL6NJ_G0004469.1 mouse_genomes_project 6 131612037 131624759 + A230083G16Rik antisense antisense MGP_C57BL6NJ_T0078042.1 MGP_C57BL6NJ_G0031181.1 mouse_genomes_project 6 52583749 52586166 - MGP_C57BL6NJ_P0078042 Hoxa6 protein_coding protein_coding MGP_C57BL6NJ_T0078554.1 MGP_C57BL6NJ_G0031315.1 mouse_genomes_project 6 74881571 74897976 + MGP_C57BL6NJ_P0078554 Ggcx protein_coding protein_coding MGP_C57BL6NJ_T0078555.1 MGP_C57BL6NJ_G0031315.1 mouse_genomes_project 6 74881604 74897665 + MGP_C57BL6NJ_P0078555 Ggcx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078556.1 MGP_C57BL6NJ_G0031315.1 mouse_genomes_project 6 74885118 74897506 + MGP_C57BL6NJ_P0078556 Ggcx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078557.1 MGP_C57BL6NJ_G0031315.1 mouse_genomes_project 6 74885169 74891304 + MGP_C57BL6NJ_P0078557 Ggcx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078558.1 MGP_C57BL6NJ_G0031315.1 mouse_genomes_project 6 74893880 74896522 + MGP_C57BL6NJ_P0078558 Ggcx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015634.1 MGP_C57BL6NJ_G0013679.1 mouse_genomes_project 6 3732894 3733960 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081530.1 MGP_C57BL6NJ_G0031936.1 mouse_genomes_project 6 155926973 155949430 + MGP_C57BL6NJ_P0081530 Smco2 protein_coding protein_coding MGP_C57BL6NJ_T0081531.1 MGP_C57BL6NJ_G0031936.1 mouse_genomes_project 6 155927026 155933045 + Smco2 protein_coding retained_intron MGP_C57BL6NJ_T0081532.1 MGP_C57BL6NJ_G0031936.1 mouse_genomes_project 6 155933723 155940978 + Smco2 protein_coding processed_transcript MGP_C57BL6NJ_T0081533.1 MGP_C57BL6NJ_G0031936.1 mouse_genomes_project 6 155938650 155944979 + Smco2 protein_coding processed_transcript MGP_C57BL6NJ_T0078268.1 MGP_C57BL6NJ_G0031249.1 mouse_genomes_project 6 58853139 58854159 - MGP_C57BL6NJ_P0078268 Vmn1r26 protein_coding protein_coding MGP_C57BL6NJ_T0079398.1 MGP_C57BL6NJ_G0031484.1 mouse_genomes_project 6 95376695 95430484 - MGP_C57BL6NJ_P0079398 Wnt7a protein_coding protein_coding MGP_C57BL6NJ_T0079399.1 MGP_C57BL6NJ_G0031484.1 mouse_genomes_project 6 95376697 95377812 - Wnt7a protein_coding processed_transcript MGP_C57BL6NJ_T0079400.1 MGP_C57BL6NJ_G0031484.1 mouse_genomes_project 6 95376699 95377786 - Wnt7a protein_coding processed_transcript MGP_C57BL6NJ_T0000259.1 MGP_C57BL6NJ_G0000194.1 mouse_genomes_project 6 71925438 71926033 - MGP_C57BL6NJ_P0000259 Igkv5-43 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002312.1 MGP_C57BL6NJ_G0002202.1 mouse_genomes_project 6 148959889 148960559 + TEC TEC MGP_C57BL6NJ_T0000295.1 MGP_C57BL6NJ_G0000220.1 mouse_genomes_project 6 72840250 72840844 + MGP_C57BL6NJ_P0000295 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0008769.1 MGP_C57BL6NJ_G0007089.1 mouse_genomes_project 6 51050616 51054576 - Gm44109 lincRNA lincRNA MGP_C57BL6NJ_T0077811.1 MGP_C57BL6NJ_G0031125.1 mouse_genomes_project 6 47888374 47900285 + MGP_C57BL6NJ_P0077811 Zfp956 protein_coding protein_coding MGP_C57BL6NJ_T0077812.1 MGP_C57BL6NJ_G0031125.1 mouse_genomes_project 6 47888429 47891240 + Zfp956 protein_coding retained_intron MGP_C57BL6NJ_T0077813.1 MGP_C57BL6NJ_G0031125.1 mouse_genomes_project 6 47888431 47900282 + MGP_C57BL6NJ_P0077813 Zfp956 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011023.1 MGP_C57BL6NJ_G0009108.1 mouse_genomes_project 6 56876611 56876715 - Gm44413 miRNA miRNA MGP_C57BL6NJ_T0080813.1 MGP_C57BL6NJ_G0031756.1 mouse_genomes_project 6 135251285 135307089 - MGP_C57BL6NJ_P0080813 Tead4 protein_coding protein_coding MGP_C57BL6NJ_T0080814.1 MGP_C57BL6NJ_G0031756.1 mouse_genomes_project 6 135302105 135331970 - MGP_C57BL6NJ_P0080814 Tead4 protein_coding protein_coding MGP_C57BL6NJ_T0080815.1 MGP_C57BL6NJ_G0031756.1 mouse_genomes_project 6 135302155 135331885 - MGP_C57BL6NJ_P0080815 Tead4 protein_coding protein_coding MGP_C57BL6NJ_T0079525.1 MGP_C57BL6NJ_G0031512.1 mouse_genomes_project 6 101487149 101520312 - MGP_C57BL6NJ_P0079525 Tmf1 protein_coding protein_coding MGP_C57BL6NJ_T0079526.1 MGP_C57BL6NJ_G0031512.1 mouse_genomes_project 6 101489826 101520227 - MGP_C57BL6NJ_P0079526 Tmf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079527.1 MGP_C57BL6NJ_G0031512.1 mouse_genomes_project 6 101497937 101509983 - Tmf1 protein_coding processed_transcript MGP_C57BL6NJ_T0076994.1 MGP_C57BL6NJ_G0030929.1 mouse_genomes_project 6 22332437 22417776 - MGP_C57BL6NJ_P0076994 Slc13a1 protein_coding protein_coding MGP_C57BL6NJ_T0076995.1 MGP_C57BL6NJ_G0030929.1 mouse_genomes_project 6 22332704 22352720 - Slc13a1 protein_coding processed_transcript MGP_C57BL6NJ_T0076996.1 MGP_C57BL6NJ_G0030929.1 mouse_genomes_project 6 22349437 22352717 - Slc13a1 protein_coding retained_intron MGP_C57BL6NJ_T0076997.1 MGP_C57BL6NJ_G0030929.1 mouse_genomes_project 6 22378926 22417774 - Slc13a1 protein_coding retained_intron MGP_C57BL6NJ_T0018742.1 MGP_C57BL6NJ_G0016028.1 mouse_genomes_project 6 64510087 64519423 - 9330118I20Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018743.1 MGP_C57BL6NJ_G0016028.1 mouse_genomes_project 6 64517186 64521677 - 9330118I20Rik processed_transcript retained_intron MGP_C57BL6NJ_T0077648.1 MGP_C57BL6NJ_G0031069.1 mouse_genomes_project 6 41189358 41218859 - MGP_C57BL6NJ_P0077648 Trpv5 protein_coding protein_coding MGP_C57BL6NJ_T0077649.1 MGP_C57BL6NJ_G0031069.1 mouse_genomes_project 6 41190315 41218745 - MGP_C57BL6NJ_P0077649 Trpv5 protein_coding protein_coding MGP_C57BL6NJ_T0081354.1 MGP_C57BL6NJ_G0031907.1 mouse_genomes_project 6 151218503 151233781 + MGP_C57BL6NJ_P0081354 Golt1b protein_coding protein_coding MGP_C57BL6NJ_T0081355.1 MGP_C57BL6NJ_G0031907.1 mouse_genomes_project 6 151218535 151231641 + Golt1b protein_coding processed_transcript MGP_C57BL6NJ_T0016005.1 MGP_C57BL6NJ_G0014050.1 mouse_genomes_project 6 131927092 131927409 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103250.1 MGP_C57BL6NJ_G0041044.1 mouse_genomes_project 6 58216833 58217686 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0079210.1 MGP_C57BL6NJ_G0031444.1 mouse_genomes_project 6 92003122 92004112 + MGP_C57BL6NJ_P0079210 Dnajb8 protein_coding protein_coding MGP_C57BL6NJ_T0079211.1 MGP_C57BL6NJ_G0031444.1 mouse_genomes_project 6 92003739 92067106 + MGP_C57BL6NJ_P0079211 Dnajb8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078412.1 MGP_C57BL6NJ_G0031284.1 mouse_genomes_project 6 68887564 68937720 - MGP_C57BL6NJ_P0078412 Il12rb2 protein_coding protein_coding MGP_C57BL6NJ_T0078413.1 MGP_C57BL6NJ_G0031284.1 mouse_genomes_project 6 68888250 68980360 - MGP_C57BL6NJ_P0078413 Il12rb2 protein_coding protein_coding MGP_C57BL6NJ_T0005084.1 MGP_C57BL6NJ_G0004359.1 mouse_genomes_project 6 31091806 31107554 + Plxna4os3 antisense antisense MGP_C57BL6NJ_T0005085.1 MGP_C57BL6NJ_G0004359.1 mouse_genomes_project 6 31091890 31107546 + Plxna4os3 antisense antisense MGP_C57BL6NJ_T0101788.1 MGP_C57BL6NJ_G0039834.1 mouse_genomes_project 6 46388187 46388319 - Gm25161 snoRNA snoRNA MGP_C57BL6NJ_T0011010.1 MGP_C57BL6NJ_G0009095.1 mouse_genomes_project 6 29786653 29786724 - Mir29b-1 miRNA miRNA MGP_C57BL6NJ_T0002178.1 MGP_C57BL6NJ_G0002069.1 mouse_genomes_project 6 86271889 86273356 + TEC TEC MGP_C57BL6NJ_T0077712.1 MGP_C57BL6NJ_G0031087.1 mouse_genomes_project 6 41940428 41941310 + MGP_C57BL6NJ_P0077712 Tas2r143 protein_coding protein_coding MGP_C57BL6NJ_T0015856.1 MGP_C57BL6NJ_G0013901.1 mouse_genomes_project 6 75817210 75817634 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002134.1 MGP_C57BL6NJ_G0002025.1 mouse_genomes_project 6 58507480 58510322 - TEC TEC MGP_C57BL6NJ_T0015930.1 MGP_C57BL6NJ_G0013975.1 mouse_genomes_project 6 108065825 108066262 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015629.1 MGP_C57BL6NJ_G0013674.1 mouse_genomes_project 6 1752277 1755126 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101833.1 MGP_C57BL6NJ_G0039879.1 mouse_genomes_project 6 130709994 130710104 + Gm23554 snoRNA snoRNA MGP_C57BL6NJ_T0015668.1 MGP_C57BL6NJ_G0013713.1 mouse_genomes_project 6 16971509 16972818 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015916.1 MGP_C57BL6NJ_G0013961.1 mouse_genomes_project 6 102287182 102287434 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002186.1 MGP_C57BL6NJ_G0002077.1 mouse_genomes_project 6 89908827 89911187 - TEC TEC MGP_C57BL6NJ_T0015897.1 MGP_C57BL6NJ_G0013942.1 mouse_genomes_project 6 94179008 94179593 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008814.1 MGP_C57BL6NJ_G0007126.1 mouse_genomes_project 6 75949390 75971972 - lincRNA lincRNA MGP_C57BL6NJ_T0002106.1 MGP_C57BL6NJ_G0001997.1 mouse_genomes_project 6 45139655 45141919 + TEC TEC MGP_C57BL6NJ_T0080720.1 MGP_C57BL6NJ_G0031732.1 mouse_genomes_project 6 132112481 132133421 - MGP_C57BL6NJ_P0080720 Plekhg6 protein_coding protein_coding MGP_C57BL6NJ_T0080706.1 MGP_C57BL6NJ_G0031728.1 mouse_genomes_project 6 132010027 132017826 - MGP_C57BL6NJ_P0080706 Tuba3a protein_coding protein_coding MGP_C57BL6NJ_T0077966.1 MGP_C57BL6NJ_G0031162.1 mouse_genomes_project 6 50015027 50021825 + MGP_C57BL6NJ_P0077966 Npy protein_coding protein_coding MGP_C57BL6NJ_T0078263.1 MGP_C57BL6NJ_G0031244.1 mouse_genomes_project 6 58743040 58744136 - MGP_C57BL6NJ_P0078263 Vmn1r22 protein_coding protein_coding MGP_C57BL6NJ_T0011932.1 MGP_C57BL6NJ_G0010017.1 mouse_genomes_project 6 128666394 128666649 - Gm27826 misc_RNA misc_RNA MGP_C57BL6NJ_T0005234.1 MGP_C57BL6NJ_G0004460.1 mouse_genomes_project 6 126557359 126559547 + antisense antisense MGP_C57BL6NJ_T0011926.1 MGP_C57BL6NJ_G0010011.1 mouse_genomes_project 6 104435058 104435380 - Gm24248 misc_RNA misc_RNA MGP_C57BL6NJ_T0080356.1 MGP_C57BL6NJ_G0031660.1 mouse_genomes_project 6 128625052 128640235 - MGP_C57BL6NJ_P0080356 Klrg1 protein_coding protein_coding MGP_C57BL6NJ_T0080289.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126881273 126889846 - Atp6v1e1 protein_coding retained_intron MGP_C57BL6NJ_T0080290.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126882212 126905948 - MGP_C57BL6NJ_P0080290 Atp6v1e1 protein_coding protein_coding MGP_C57BL6NJ_T0080291.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126882222 126901553 - MGP_C57BL6NJ_P0080291 Atp6v1e1 protein_coding protein_coding MGP_C57BL6NJ_T0080292.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126891166 126905840 - Atp6v1e1 protein_coding retained_intron MGP_C57BL6NJ_T0080293.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126891504 126905847 - MGP_C57BL6NJ_P0080293 Atp6v1e1 protein_coding protein_coding MGP_C57BL6NJ_T0080294.1 MGP_C57BL6NJ_G0031647.1 mouse_genomes_project 6 126894667 126905694 - MGP_C57BL6NJ_P0080294 Atp6v1e1 protein_coding protein_coding MGP_C57BL6NJ_T0015624.1 MGP_C57BL6NJ_G0013669.1 mouse_genomes_project 6 1039662 1039758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077825.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455155 48479115 + MGP_C57BL6NJ_P0077825 Krba1 protein_coding protein_coding MGP_C57BL6NJ_T0077826.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455183 48476474 + MGP_C57BL6NJ_P0077826 Krba1 protein_coding protein_coding MGP_C57BL6NJ_T0077827.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455199 48460254 + Krba1 protein_coding retained_intron MGP_C57BL6NJ_T0077828.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455201 48476469 + MGP_C57BL6NJ_P0077828 Krba1 protein_coding protein_coding MGP_C57BL6NJ_T0077829.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455227 48479115 + MGP_C57BL6NJ_P0077829 Krba1 protein_coding protein_coding MGP_C57BL6NJ_T0077830.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455267 48463037 + Krba1 protein_coding processed_transcript MGP_C57BL6NJ_T0077831.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48455435 48477036 + MGP_C57BL6NJ_P0077831 Krba1 protein_coding protein_coding MGP_C57BL6NJ_T0077832.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48463612 48468107 + Krba1 protein_coding processed_transcript MGP_C57BL6NJ_T0077833.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48468768 48479115 + Krba1 protein_coding retained_intron MGP_C57BL6NJ_T0077834.1 MGP_C57BL6NJ_G0031128.1 mouse_genomes_project 6 48472905 48479351 + Krba1 protein_coding retained_intron MGP_C57BL6NJ_T0011064.1 MGP_C57BL6NJ_G0009149.1 mouse_genomes_project 6 131804096 131804159 + Mir7045 miRNA miRNA MGP_C57BL6NJ_T0077093.1 MGP_C57BL6NJ_G0030954.1 mouse_genomes_project 6 27833814 27836513 + MGP_C57BL6NJ_P0077093 Hilpda protein_coding protein_coding MGP_C57BL6NJ_T0077094.1 MGP_C57BL6NJ_G0030954.1 mouse_genomes_project 6 27833952 27836773 + MGP_C57BL6NJ_P0077094 Hilpda protein_coding protein_coding MGP_C57BL6NJ_T0079411.1 MGP_C57BL6NJ_G0031488.1 mouse_genomes_project 6 95533610 95540305 + MGP_C57BL6NJ_P0079411 Lsm3 protein_coding protein_coding MGP_C57BL6NJ_T0079412.1 MGP_C57BL6NJ_G0031488.1 mouse_genomes_project 6 95533639 95537515 + Lsm3 protein_coding retained_intron MGP_C57BL6NJ_T0079413.1 MGP_C57BL6NJ_G0031488.1 mouse_genomes_project 6 95533659 95535691 + Lsm3 protein_coding retained_intron MGP_C57BL6NJ_T0079414.1 MGP_C57BL6NJ_G0031488.1 mouse_genomes_project 6 95533729 95535202 + Lsm3 protein_coding retained_intron MGP_C57BL6NJ_T0079415.1 MGP_C57BL6NJ_G0031488.1 mouse_genomes_project 6 95533730 95540300 + MGP_C57BL6NJ_P0079415 Lsm3 protein_coding protein_coding MGP_C57BL6NJ_T0008715.1 MGP_C57BL6NJ_G0007054.1 mouse_genomes_project 6 29786722 29787126 - Gm27019 lincRNA lincRNA MGP_C57BL6NJ_T0079821.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983056 118995329 + MGP_C57BL6NJ_P0079821 Il17re protein_coding protein_coding MGP_C57BL6NJ_T0079822.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983333 118985447 + Il17re protein_coding retained_intron MGP_C57BL6NJ_T0079823.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983379 118994968 + MGP_C57BL6NJ_P0079823 Il17re protein_coding protein_coding MGP_C57BL6NJ_T0079824.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983406 118994947 + MGP_C57BL6NJ_P0079824 Il17re protein_coding protein_coding MGP_C57BL6NJ_T0079825.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983467 118994716 + MGP_C57BL6NJ_P0079825 Il17re protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079826.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118983467 118994716 + MGP_C57BL6NJ_P0079826 Il17re protein_coding protein_coding MGP_C57BL6NJ_T0079827.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118989378 118995327 + Il17re protein_coding retained_intron MGP_C57BL6NJ_T0079828.1 MGP_C57BL6NJ_G0031564.1 mouse_genomes_project 6 118990932 118994560 + Il17re protein_coding retained_intron MGP_C57BL6NJ_T0000444.1 MGP_C57BL6NJ_G0000363.1 mouse_genomes_project 6 71641329 71641538 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0005073.1 MGP_C57BL6NJ_G0004349.1 mouse_genomes_project 6 15569204 15569805 - Gm26738 antisense antisense MGP_C57BL6NJ_T0103265.1 MGP_C57BL6NJ_G0041059.1 mouse_genomes_project 6 68308995 68309895 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077995.1 MGP_C57BL6NJ_G0031168.1 mouse_genomes_project 6 50888923 50892691 - MGP_C57BL6NJ_P0077995 Npvf protein_coding protein_coding MGP_C57BL6NJ_T0079592.1 MGP_C57BL6NJ_G0031521.1 mouse_genomes_project 6 104148177 104195116 - MGP_C57BL6NJ_P0079592 Eif4e3 protein_coding protein_coding MGP_C57BL6NJ_T0002180.1 MGP_C57BL6NJ_G0002071.1 mouse_genomes_project 6 86629065 86631864 - TEC TEC MGP_C57BL6NJ_T0079968.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121258492 121281969 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0079969.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121258994 121331329 - MGP_C57BL6NJ_P0079969 Raf1 protein_coding protein_coding MGP_C57BL6NJ_T0079970.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121258994 121332000 - MGP_C57BL6NJ_P0079970 Raf1 protein_coding protein_coding MGP_C57BL6NJ_T0079971.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121259022 121262251 - MGP_C57BL6NJ_P0079971 Raf1 protein_coding protein_coding MGP_C57BL6NJ_T0079972.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121259666 121260744 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0079973.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121260019 121263970 - MGP_C57BL6NJ_P0079973 Raf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079974.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121260690 121278074 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0079975.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121262241 121267455 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0079976.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121262251 121267493 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0079977.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121263948 121280343 - MGP_C57BL6NJ_P0079977 Raf1 protein_coding protein_coding MGP_C57BL6NJ_T0079978.1 MGP_C57BL6NJ_G0031591.1 mouse_genomes_project 6 121277545 121332000 - Raf1 protein_coding retained_intron MGP_C57BL6NJ_T0078229.1 MGP_C57BL6NJ_G0031225.1 mouse_genomes_project 6 57878004 57879189 + MGP_C57BL6NJ_P0078229 protein_coding protein_coding MGP_C57BL6NJ_T0008728.1 MGP_C57BL6NJ_G0007062.1 mouse_genomes_project 6 30368745 30520342 + Gm43154 lincRNA lincRNA MGP_C57BL6NJ_T0008729.1 MGP_C57BL6NJ_G0007062.1 mouse_genomes_project 6 30368823 30520605 + Gm43154 lincRNA lincRNA MGP_C57BL6NJ_T0008732.1 MGP_C57BL6NJ_G0007062.1 mouse_genomes_project 6 30444257 30520607 + Gm43154 lincRNA lincRNA MGP_C57BL6NJ_T0002112.1 MGP_C57BL6NJ_G0002003.1 mouse_genomes_project 6 45915370 45919308 + TEC TEC MGP_C57BL6NJ_T0078379.1 MGP_C57BL6NJ_G0031280.1 mouse_genomes_project 6 68368506 68369738 - MGP_C57BL6NJ_P0078379 Vmn1r39 protein_coding protein_coding MGP_C57BL6NJ_T0008919.1 MGP_C57BL6NJ_G0007212.1 mouse_genomes_project 6 135967677 135975713 + lincRNA lincRNA MGP_C57BL6NJ_T0000458.1 MGP_C57BL6NJ_G0000377.1 mouse_genomes_project 6 72650102 72650374 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0077955.1 MGP_C57BL6NJ_G0031159.1 mouse_genomes_project 6 49470947 49496244 + MGP_C57BL6NJ_P0077955 Ccdc126 protein_coding protein_coding MGP_C57BL6NJ_T0077956.1 MGP_C57BL6NJ_G0031159.1 mouse_genomes_project 6 49470980 49496240 + MGP_C57BL6NJ_P0077956 Ccdc126 protein_coding protein_coding MGP_C57BL6NJ_T0015800.1 MGP_C57BL6NJ_G0013845.1 mouse_genomes_project 6 66652842 66654243 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101778.1 MGP_C57BL6NJ_G0039824.1 mouse_genomes_project 6 23161928 23162059 - Gm22267 snoRNA snoRNA MGP_C57BL6NJ_T0018695.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953102 30077042 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018696.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953102 30077073 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018697.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953102 30076916 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018698.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953108 30077061 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018699.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953156 30077046 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018700.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953156 30077054 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018701.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953173 30067127 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018702.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953173 30076979 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018703.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953186 30077066 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018704.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953192 30077042 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018705.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 29953198 30077069 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018706.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 30015567 30032243 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018707.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 30022721 30077072 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018708.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 30031556 30032689 + 2210408F21Rik processed_transcript TEC MGP_C57BL6NJ_T0018709.1 MGP_C57BL6NJ_G0016017.1 mouse_genomes_project 6 30060798 30077054 + 2210408F21Rik processed_transcript lincRNA MGP_C57BL6NJ_T0002318.1 MGP_C57BL6NJ_G0002208.1 mouse_genomes_project 6 154277087 154279648 - TEC TEC MGP_C57BL6NJ_T0100560.1 MGP_C57BL6NJ_G0038606.1 mouse_genomes_project 6 137738648 137738722 + Gm22621 snRNA snRNA MGP_C57BL6NJ_T0079335.1 MGP_C57BL6NJ_G0031474.1 mouse_genomes_project 6 94283090 94314337 + MGP_C57BL6NJ_P0079335 Uroc1 protein_coding protein_coding MGP_C57BL6NJ_T0079336.1 MGP_C57BL6NJ_G0031474.1 mouse_genomes_project 6 94283095 94314332 + MGP_C57BL6NJ_P0079336 Uroc1 protein_coding protein_coding MGP_C57BL6NJ_T0080700.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131962699 131967079 - MGP_C57BL6NJ_P0080700 Cd27 protein_coding protein_coding MGP_C57BL6NJ_T0080701.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131963230 131967063 - MGP_C57BL6NJ_P0080701 Cd27 protein_coding protein_coding MGP_C57BL6NJ_T0080702.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131963301 131967022 - MGP_C57BL6NJ_P0080702 Cd27 protein_coding protein_coding MGP_C57BL6NJ_T0080703.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131963635 131964894 - Cd27 protein_coding retained_intron MGP_C57BL6NJ_T0080704.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131963771 131964754 - Cd27 protein_coding retained_intron MGP_C57BL6NJ_T0080705.1 MGP_C57BL6NJ_G0031727.1 mouse_genomes_project 6 131966176 131967072 - Cd27 protein_coding retained_intron MGP_C57BL6NJ_T0015989.1 MGP_C57BL6NJ_G0014034.1 mouse_genomes_project 6 127848502 127848909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011029.1 MGP_C57BL6NJ_G0009114.1 mouse_genomes_project 6 78960548 78960660 + Gm44334 miRNA miRNA MGP_C57BL6NJ_T0080476.1 MGP_C57BL6NJ_G0031691.1 mouse_genomes_project 6 131085834 131117619 + MGP_C57BL6NJ_P0080476 C1rl protein_coding protein_coding MGP_C57BL6NJ_T0015675.1 MGP_C57BL6NJ_G0013720.1 mouse_genomes_project 6 20343287 20343782 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016097.1 MGP_C57BL6NJ_G0014142.1 mouse_genomes_project 6 156377404 156378217 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079946.1 MGP_C57BL6NJ_G0031585.1 mouse_genomes_project 6 120840070 120875609 + MGP_C57BL6NJ_P0079946 Gm17482 protein_coding protein_coding MGP_C57BL6NJ_T0100506.1 MGP_C57BL6NJ_G0038552.1 mouse_genomes_project 6 15139776 15139883 + Gm25021 snRNA snRNA MGP_C57BL6NJ_T0016061.1 MGP_C57BL6NJ_G0014106.1 mouse_genomes_project 6 140214139 140214611 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077321.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060243 32836487 + MGP_C57BL6NJ_P0077321 Exoc4 protein_coding protein_coding MGP_C57BL6NJ_T0077322.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060286 32180806 + Exoc4 protein_coding retained_intron MGP_C57BL6NJ_T0077323.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060286 32671891 + Exoc4 protein_coding processed_transcript MGP_C57BL6NJ_T0077324.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060286 32322296 + MGP_C57BL6NJ_P0077324 Exoc4 protein_coding protein_coding MGP_C57BL6NJ_T0077325.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060290 32429968 + MGP_C57BL6NJ_P0077325 Exoc4 protein_coding protein_coding MGP_C57BL6NJ_T0077326.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32060294 32138610 + Exoc4 protein_coding processed_transcript MGP_C57BL6NJ_T0077327.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32156645 32352685 + Exoc4 protein_coding processed_transcript MGP_C57BL6NJ_T0077328.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32157707 32177968 + Exoc4 protein_coding retained_intron MGP_C57BL6NJ_T0077329.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32548320 32722777 + Exoc4 protein_coding processed_transcript MGP_C57BL6NJ_T0077330.1 MGP_C57BL6NJ_G0030990.1 mouse_genomes_project 6 32722716 32734851 + Exoc4 protein_coding processed_transcript MGP_C57BL6NJ_T0080144.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124468293 125101798 - MGP_C57BL6NJ_P0080144 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080145.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124473357 124476488 - Cacna1c protein_coding processed_transcript MGP_C57BL6NJ_T0080146.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124473372 124641137 - Cacna1c protein_coding processed_transcript MGP_C57BL6NJ_T0080147.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124473517 125008931 - MGP_C57BL6NJ_P0080147 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080148.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124473995 125008931 - MGP_C57BL6NJ_P0080148 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080149.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124473995 125008978 - MGP_C57BL6NJ_P0080149 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080150.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474135 125101985 - MGP_C57BL6NJ_P0080150 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080151.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474700 125101954 - MGP_C57BL6NJ_P0080151 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080152.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474700 125009303 - MGP_C57BL6NJ_P0080152 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080153.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080153 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080154.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080154 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080155.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080155 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080156.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080156 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080157.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080157 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080158.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474846 125008717 - MGP_C57BL6NJ_P0080158 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080159.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474852 124981067 - MGP_C57BL6NJ_P0080159 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080160.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474945 125101798 - MGP_C57BL6NJ_P0080160 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080161.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474945 125008717 - MGP_C57BL6NJ_P0080161 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080162.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124474945 125008717 - MGP_C57BL6NJ_P0080162 Cacna1c protein_coding protein_coding MGP_C57BL6NJ_T0080163.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124496218 124510252 - Cacna1c protein_coding processed_transcript MGP_C57BL6NJ_T0080164.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124585423 124590346 - Cacna1c protein_coding retained_intron MGP_C57BL6NJ_T0080165.1 MGP_C57BL6NJ_G0031627.1 mouse_genomes_project 6 124840108 125101976 - Cacna1c protein_coding processed_transcript MGP_C57BL6NJ_T0077529.1 MGP_C57BL6NJ_G0031030.1 mouse_genomes_project 6 38358867 38395560 - MGP_C57BL6NJ_P0077529 Parp12 protein_coding protein_coding MGP_C57BL6NJ_T0077530.1 MGP_C57BL6NJ_G0031030.1 mouse_genomes_project 6 38361469 38363547 - Parp12 protein_coding retained_intron MGP_C57BL6NJ_T0078330.1 MGP_C57BL6NJ_G0031264.1 mouse_genomes_project 6 66101249 66103370 + MGP_C57BL6NJ_P0078330 Atoh1 protein_coding protein_coding MGP_C57BL6NJ_T0015754.1 MGP_C57BL6NJ_G0013799.1 mouse_genomes_project 6 49725323 49726069 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008882.1 MGP_C57BL6NJ_G0007177.1 mouse_genomes_project 6 112767612 112772397 + 4933431M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0005101.1 MGP_C57BL6NJ_G0004373.1 mouse_genomes_project 6 39259923 39260363 - Gm26833 antisense antisense MGP_C57BL6NJ_T0077633.1 MGP_C57BL6NJ_G0031059.1 mouse_genomes_project 6 40460998 40465480 - MGP_C57BL6NJ_P0077633 Gm2663 protein_coding protein_coding MGP_C57BL6NJ_T0081418.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 153992842 154051041 - MGP_C57BL6NJ_P0081418 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081419.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 153998165 154092509 - MGP_C57BL6NJ_P0081419 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081420.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154004543 154092509 - MGP_C57BL6NJ_P0081420 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081421.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154004823 154037425 - Bcat1 protein_coding processed_transcript MGP_C57BL6NJ_T0081422.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154008123 154050839 - MGP_C57BL6NJ_P0081422 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081423.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154016051 154033614 - MGP_C57BL6NJ_P0081423 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081424.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154020769 154050082 - MGP_C57BL6NJ_P0081424 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081425.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154033560 154042984 - Bcat1 protein_coding processed_transcript MGP_C57BL6NJ_T0081426.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154033579 154049890 - MGP_C57BL6NJ_P0081426 Bcat1 protein_coding protein_coding MGP_C57BL6NJ_T0081427.1 MGP_C57BL6NJ_G0031919.1 mouse_genomes_project 6 154033643 154043096 - Bcat1 protein_coding processed_transcript MGP_C57BL6NJ_T0079796.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118910971 118921182 + MGP_C57BL6NJ_P0079796 Ttll3 protein_coding protein_coding MGP_C57BL6NJ_T0079797.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118912448 118920582 + Ttll3 protein_coding processed_transcript MGP_C57BL6NJ_T0079798.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118914169 118938019 + MGP_C57BL6NJ_P0079798 Ttll3 protein_coding protein_coding MGP_C57BL6NJ_T0079799.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118914208 118938001 + MGP_C57BL6NJ_P0079799 Ttll3 protein_coding protein_coding MGP_C57BL6NJ_T0079800.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118914871 118938015 + MGP_C57BL6NJ_P0079800 Ttll3 protein_coding protein_coding MGP_C57BL6NJ_T0079801.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118914888 118931603 + MGP_C57BL6NJ_P0079801 Ttll3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079802.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118919469 118937994 + Ttll3 protein_coding retained_intron MGP_C57BL6NJ_T0079803.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118930909 118931603 + Ttll3 protein_coding processed_transcript MGP_C57BL6NJ_T0079804.1 MGP_C57BL6NJ_G0031560.1 mouse_genomes_project 6 118936262 118937990 + Ttll3 protein_coding processed_transcript MGP_C57BL6NJ_T0000223.1 MGP_C57BL6NJ_G0000167.1 mouse_genomes_project 6 70405268 70405734 + MGP_C57BL6NJ_P0000223 Igkv14-100 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000224.1 MGP_C57BL6NJ_G0000167.1 mouse_genomes_project 6 70405268 70405734 + MGP_C57BL6NJ_P0000224 Igkv14-100 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0076755.1 MGP_C57BL6NJ_G0030887.1 mouse_genomes_project 6 5331486 5700079 + MGP_C57BL6NJ_P0076755 Gm45062 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080985.1 MGP_C57BL6NJ_G0031807.1 mouse_genomes_project 6 138765491 138790203 - MGP_C57BL6NJ_P0080985 Klra2 protein_coding protein_coding MGP_C57BL6NJ_T0080986.1 MGP_C57BL6NJ_G0031807.1 mouse_genomes_project 6 138766257 138790203 - MGP_C57BL6NJ_P0080986 Klra2 protein_coding protein_coding MGP_C57BL6NJ_T0005235.1 MGP_C57BL6NJ_G0004461.1 mouse_genomes_project 6 127051143 127052110 + Gm43916 antisense antisense MGP_C57BL6NJ_T0079025.1 MGP_C57BL6NJ_G0031409.1 mouse_genomes_project 6 90027950 90039143 + MGP_C57BL6NJ_P0079025 Snrpg protein_coding protein_coding MGP_C57BL6NJ_T0079026.1 MGP_C57BL6NJ_G0031409.1 mouse_genomes_project 6 90028188 90033402 + Snrpg protein_coding retained_intron MGP_C57BL6NJ_T0079027.1 MGP_C57BL6NJ_G0031409.1 mouse_genomes_project 6 90028217 90038722 + Snrpg protein_coding processed_transcript MGP_C57BL6NJ_T0079028.1 MGP_C57BL6NJ_G0031409.1 mouse_genomes_project 6 90028250 90038673 + Snrpg protein_coding processed_transcript MGP_C57BL6NJ_T0079466.1 MGP_C57BL6NJ_G0031498.1 mouse_genomes_project 6 96426263 96790295 - MGP_C57BL6NJ_P0079466 Prickle2 protein_coding protein_coding MGP_C57BL6NJ_T0079467.1 MGP_C57BL6NJ_G0031498.1 mouse_genomes_project 6 96426263 96635628 - MGP_C57BL6NJ_P0079467 Prickle2 protein_coding protein_coding MGP_C57BL6NJ_T0079468.1 MGP_C57BL6NJ_G0031498.1 mouse_genomes_project 6 96426265 96601547 - MGP_C57BL6NJ_P0079468 Prickle2 protein_coding protein_coding MGP_C57BL6NJ_T0079469.1 MGP_C57BL6NJ_G0031498.1 mouse_genomes_project 6 96430739 96547143 - MGP_C57BL6NJ_P0079469 Prickle2 protein_coding protein_coding MGP_C57BL6NJ_T0015919.1 MGP_C57BL6NJ_G0013964.1 mouse_genomes_project 6 104298552 104299018 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015986.1 MGP_C57BL6NJ_G0014031.1 mouse_genomes_project 6 127687362 127687629 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011043.1 MGP_C57BL6NJ_G0009128.1 mouse_genomes_project 6 103538092 103538302 - miRNA miRNA MGP_C57BL6NJ_T0077696.1 MGP_C57BL6NJ_G0031084.1 mouse_genomes_project 6 41849239 41858564 - MGP_C57BL6NJ_P0077696 Fam131b protein_coding protein_coding MGP_C57BL6NJ_T0077697.1 MGP_C57BL6NJ_G0031084.1 mouse_genomes_project 6 41852086 41858393 - MGP_C57BL6NJ_P0077697 Fam131b protein_coding protein_coding MGP_C57BL6NJ_T0008943.1 MGP_C57BL6NJ_G0007225.1 mouse_genomes_project 6 151836028 151838051 + A930014E10Rik lincRNA lincRNA MGP_C57BL6NJ_T0077628.1 MGP_C57BL6NJ_G0031056.1 mouse_genomes_project 6 40384207 40404187 - MGP_C57BL6NJ_P0077628 1700074P13Rik protein_coding protein_coding MGP_C57BL6NJ_T0077629.1 MGP_C57BL6NJ_G0031056.1 mouse_genomes_project 6 40384230 40404247 - MGP_C57BL6NJ_P0077629 1700074P13Rik protein_coding protein_coding MGP_C57BL6NJ_T0077630.1 MGP_C57BL6NJ_G0031056.1 mouse_genomes_project 6 40385548 40394545 - MGP_C57BL6NJ_P0077630 1700074P13Rik protein_coding protein_coding MGP_C57BL6NJ_T0008775.1 MGP_C57BL6NJ_G0007094.1 mouse_genomes_project 6 51704869 51706123 - 0610033M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0008776.1 MGP_C57BL6NJ_G0007094.1 mouse_genomes_project 6 51705108 51705937 - 0610033M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0005093.1 MGP_C57BL6NJ_G0004366.1 mouse_genomes_project 6 33650761 33658934 - Gm14547 antisense antisense MGP_C57BL6NJ_T0015991.1 MGP_C57BL6NJ_G0014036.1 mouse_genomes_project 6 128348796 128348928 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002235.1 MGP_C57BL6NJ_G0002126.1 mouse_genomes_project 6 104183670 104189277 - TEC TEC MGP_C57BL6NJ_T0081018.1 MGP_C57BL6NJ_G0031823.1 mouse_genomes_project 6 140439496 140440388 + MGP_C57BL6NJ_P0081018 Tas2r120 protein_coding protein_coding MGP_C57BL6NJ_T0011069.1 MGP_C57BL6NJ_G0009154.1 mouse_genomes_project 6 136096556 136096612 - Mir7649 miRNA miRNA MGP_C57BL6NJ_T0015993.1 MGP_C57BL6NJ_G0014038.1 mouse_genomes_project 6 128666798 128667039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002091.1 MGP_C57BL6NJ_G0001982.1 mouse_genomes_project 6 38402375 38403592 - TEC TEC MGP_C57BL6NJ_T0077567.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38934296 38945626 + MGP_C57BL6NJ_P0077567 Ndufb2 protein_coding protein_coding MGP_C57BL6NJ_T0077568.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38934305 38941194 + MGP_C57BL6NJ_P0077568 Ndufb2 protein_coding protein_coding MGP_C57BL6NJ_T0077569.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38934307 38941145 + Ndufb2 protein_coding processed_transcript MGP_C57BL6NJ_T0077570.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38934310 38938470 + Ndufb2 protein_coding retained_intron MGP_C57BL6NJ_T0077571.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38938986 38941015 + Ndufb2 protein_coding retained_intron MGP_C57BL6NJ_T0077572.1 MGP_C57BL6NJ_G0031038.1 mouse_genomes_project 6 38944024 38945554 + Ndufb2 protein_coding processed_transcript MGP_C57BL6NJ_T0002274.1 MGP_C57BL6NJ_G0002164.1 mouse_genomes_project 6 127005013 127007107 - TEC TEC MGP_C57BL6NJ_T0000281.1 MGP_C57BL6NJ_G0000209.1 mouse_genomes_project 6 72365715 72366270 + MGP_C57BL6NJ_P0000281 Igkv6-17 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002163.1 MGP_C57BL6NJ_G0002054.1 mouse_genomes_project 6 80421715 80424951 - TEC TEC MGP_C57BL6NJ_T0005233.1 MGP_C57BL6NJ_G0004459.1 mouse_genomes_project 6 125525297 125532416 + Gm44317 antisense antisense MGP_C57BL6NJ_T0005241.1 MGP_C57BL6NJ_G0004467.1 mouse_genomes_project 6 131402592 131405849 - Gm15884 antisense antisense MGP_C57BL6NJ_T0008912.1 MGP_C57BL6NJ_G0007205.1 mouse_genomes_project 6 134604864 134619646 + Gm43634 lincRNA lincRNA MGP_C57BL6NJ_T0008698.1 MGP_C57BL6NJ_G0007043.1 mouse_genomes_project 6 14889911 14896943 + D830026I12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008699.1 MGP_C57BL6NJ_G0007043.1 mouse_genomes_project 6 14890267 14897849 + D830026I12Rik lincRNA lincRNA MGP_C57BL6NJ_T0008700.1 MGP_C57BL6NJ_G0007043.1 mouse_genomes_project 6 14890282 14902308 + D830026I12Rik lincRNA lincRNA MGP_C57BL6NJ_T0015981.1 MGP_C57BL6NJ_G0014026.1 mouse_genomes_project 6 126637998 126638335 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079200.1 MGP_C57BL6NJ_G0031442.1 mouse_genomes_project 6 91861567 91882311 + MGP_C57BL6NJ_P0079200 Rpn1 protein_coding protein_coding MGP_C57BL6NJ_T0079201.1 MGP_C57BL6NJ_G0031442.1 mouse_genomes_project 6 91861648 91872653 + MGP_C57BL6NJ_P0079201 Rpn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079202.1 MGP_C57BL6NJ_G0031442.1 mouse_genomes_project 6 91870907 91878112 + Rpn1 protein_coding retained_intron MGP_C57BL6NJ_T0079203.1 MGP_C57BL6NJ_G0031442.1 mouse_genomes_project 6 91876293 91878369 + Rpn1 protein_coding retained_intron MGP_C57BL6NJ_T0079204.1 MGP_C57BL6NJ_G0031442.1 mouse_genomes_project 6 91878577 91880394 + Rpn1 protein_coding retained_intron MGP_C57BL6NJ_T0015789.1 MGP_C57BL6NJ_G0013834.1 mouse_genomes_project 6 63880462 63880699 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011892.1 MGP_C57BL6NJ_G0009977.1 mouse_genomes_project 6 15651269 15651406 + Gm27444 misc_RNA misc_RNA MGP_C57BL6NJ_T0015936.1 MGP_C57BL6NJ_G0013981.1 mouse_genomes_project 6 112190809 112191263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078377.1 MGP_C57BL6NJ_G0031278.1 mouse_genomes_project 6 68221709 68222698 - MGP_C57BL6NJ_P0078377 Vmn1r35 protein_coding protein_coding MGP_C57BL6NJ_T0015859.1 MGP_C57BL6NJ_G0013904.1 mouse_genomes_project 6 77878322 77878824 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015738.1 MGP_C57BL6NJ_G0013783.1 mouse_genomes_project 6 47740408 47740741 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011021.1 MGP_C57BL6NJ_G0009106.1 mouse_genomes_project 6 52607552 52607637 - Mir196b miRNA miRNA MGP_C57BL6NJ_T0008861.1 MGP_C57BL6NJ_G0007161.1 mouse_genomes_project 6 95624449 95630732 + Gm45218 lincRNA lincRNA MGP_C57BL6NJ_T0016012.1 MGP_C57BL6NJ_G0014057.1 mouse_genomes_project 6 134061458 134061978 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078234.1 MGP_C57BL6NJ_G0031230.1 mouse_genomes_project 6 58006515 58008044 + MGP_C57BL6NJ_P0078234 Vmn1r14 protein_coding protein_coding MGP_C57BL6NJ_T0018733.1 MGP_C57BL6NJ_G0016025.1 mouse_genomes_project 6 54805500 54982764 - 9130019P16Rik processed_transcript antisense MGP_C57BL6NJ_T0018734.1 MGP_C57BL6NJ_G0016025.1 mouse_genomes_project 6 54843921 54871084 - 9130019P16Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018735.1 MGP_C57BL6NJ_G0016025.1 mouse_genomes_project 6 54977124 54982098 - 9130019P16Rik processed_transcript lincRNA MGP_C57BL6NJ_T0100559.1 MGP_C57BL6NJ_G0038605.1 mouse_genomes_project 6 137463133 137463207 + Gm23552 snRNA snRNA MGP_C57BL6NJ_T0008680.1 MGP_C57BL6NJ_G0007030.1 mouse_genomes_project 6 3471947 3499188 + Gm20685 lincRNA lincRNA MGP_C57BL6NJ_T0101806.1 MGP_C57BL6NJ_G0039852.1 mouse_genomes_project 6 75657634 75657830 - Gm24533 snoRNA snoRNA MGP_C57BL6NJ_T0015690.1 MGP_C57BL6NJ_G0013735.1 mouse_genomes_project 6 23335188 23335984 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005250.1 MGP_C57BL6NJ_G0004475.1 mouse_genomes_project 6 134011926 134016038 + Gm43126 antisense antisense MGP_C57BL6NJ_T0008934.1 MGP_C57BL6NJ_G0007218.1 mouse_genomes_project 6 143457017 143464302 - Gm44275 lincRNA lincRNA MGP_C57BL6NJ_T0081462.1 MGP_C57BL6NJ_G0031924.1 mouse_genomes_project 6 154407824 154674872 - MGP_C57BL6NJ_P0081462 Lmntd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081463.1 MGP_C57BL6NJ_G0031924.1 mouse_genomes_project 6 154430032 154476179 - MGP_C57BL6NJ_P0081463 Lmntd1 protein_coding protein_coding MGP_C57BL6NJ_T0081464.1 MGP_C57BL6NJ_G0031924.1 mouse_genomes_project 6 154468939 154473024 - MGP_C57BL6NJ_P0081464 Lmntd1 protein_coding protein_coding MGP_C57BL6NJ_T0081465.1 MGP_C57BL6NJ_G0031924.1 mouse_genomes_project 6 154588445 154674918 - Lmntd1 protein_coding processed_transcript MGP_C57BL6NJ_T0081466.1 MGP_C57BL6NJ_G0031924.1 mouse_genomes_project 6 154626979 154674568 - Lmntd1 protein_coding processed_transcript MGP_C57BL6NJ_T0081233.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146405624 146465930 - MGP_C57BL6NJ_P0081233 Slc15a5 protein_coding protein_coding MGP_C57BL6NJ_T0081234.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146405628 146495725 - Slc15a5 protein_coding retained_intron MGP_C57BL6NJ_T0081235.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146405628 146502546 - MGP_C57BL6NJ_P0081235 Slc15a5 protein_coding protein_coding MGP_C57BL6NJ_T0081236.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146445561 146459437 - MGP_C57BL6NJ_P0081236 Slc15a5 protein_coding protein_coding MGP_C57BL6NJ_T0081237.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146455819 146466000 - MGP_C57BL6NJ_P0081237 Slc15a5 protein_coding protein_coding MGP_C57BL6NJ_T0081238.1 MGP_C57BL6NJ_G0031883.1 mouse_genomes_project 6 146459610 146479475 - Slc15a5 protein_coding retained_intron MGP_C57BL6NJ_T0076721.1 MGP_C57BL6NJ_G0030877.1 mouse_genomes_project 6 3871514 3875510 + MGP_C57BL6NJ_P0076721 Dlx6 protein_coding protein_coding MGP_C57BL6NJ_T0076722.1 MGP_C57BL6NJ_G0030877.1 mouse_genomes_project 6 3871514 3876417 + MGP_C57BL6NJ_P0076722 Dlx6 protein_coding protein_coding MGP_C57BL6NJ_T0076723.1 MGP_C57BL6NJ_G0030877.1 mouse_genomes_project 6 3871892 3875510 + MGP_C57BL6NJ_P0076723 Dlx6 protein_coding protein_coding MGP_C57BL6NJ_T0076724.1 MGP_C57BL6NJ_G0030877.1 mouse_genomes_project 6 3871978 3873611 + Dlx6 protein_coding retained_intron MGP_C57BL6NJ_T0002065.1 MGP_C57BL6NJ_G0001956.1 mouse_genomes_project 6 15443283 15446219 + TEC TEC MGP_C57BL6NJ_T0077925.1 MGP_C57BL6NJ_G0031151.1 mouse_genomes_project 6 48983344 49014339 + MGP_C57BL6NJ_P0077925 Aoc1 protein_coding protein_coding MGP_C57BL6NJ_T0077926.1 MGP_C57BL6NJ_G0031151.1 mouse_genomes_project 6 49003707 49017651 + MGP_C57BL6NJ_P0077926 Aoc1 protein_coding protein_coding MGP_C57BL6NJ_T0077927.1 MGP_C57BL6NJ_G0031151.1 mouse_genomes_project 6 49013448 49017650 + MGP_C57BL6NJ_P0077927 Aoc1 protein_coding protein_coding MGP_C57BL6NJ_T0077928.1 MGP_C57BL6NJ_G0031151.1 mouse_genomes_project 6 49013448 49017650 + MGP_C57BL6NJ_P0077928 Aoc1 protein_coding protein_coding MGP_C57BL6NJ_T0077929.1 MGP_C57BL6NJ_G0031151.1 mouse_genomes_project 6 49015817 49017114 + Aoc1 protein_coding retained_intron MGP_C57BL6NJ_T0008918.1 MGP_C57BL6NJ_G0007211.1 mouse_genomes_project 6 135967677 135975713 - lincRNA lincRNA MGP_C57BL6NJ_T0103273.1 MGP_C57BL6NJ_G0041067.1 mouse_genomes_project 6 93687523 93688363 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102517.1 MGP_C57BL6NJ_G0040374.1 mouse_genomes_project 6 64302966 64306352 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102518.1 MGP_C57BL6NJ_G0040374.1 mouse_genomes_project 6 64303316 64304714 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0018777.1 MGP_C57BL6NJ_G0016041.1 mouse_genomes_project 6 132258031 132272763 + Gm26728 processed_transcript antisense MGP_C57BL6NJ_T0018778.1 MGP_C57BL6NJ_G0016041.1 mouse_genomes_project 6 132258035 132259577 + Gm26728 processed_transcript retained_intron MGP_C57BL6NJ_T0018779.1 MGP_C57BL6NJ_G0016041.1 mouse_genomes_project 6 132258037 132263276 + Gm26728 processed_transcript antisense MGP_C57BL6NJ_T0015968.1 MGP_C57BL6NJ_G0014013.1 mouse_genomes_project 6 121431702 121432110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000240.1 MGP_C57BL6NJ_G0000179.1 mouse_genomes_project 6 70850440 70851003 - MGP_C57BL6NJ_P0000240 Igkv4-86 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000241.1 MGP_C57BL6NJ_G0000179.1 mouse_genomes_project 6 70850440 70850968 - MGP_C57BL6NJ_P0000241 Igkv4-86 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0079277.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736124 92743240 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079278.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736142 92739923 + Tpra1 protein_coding retained_intron MGP_C57BL6NJ_T0079279.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736142 92740390 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079280.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736162 92744189 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079281.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736167 92744053 + MGP_C57BL6NJ_P0079281 Tpra1 protein_coding protein_coding MGP_C57BL6NJ_T0079282.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736177 92744037 + MGP_C57BL6NJ_P0079282 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079283.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736278 92746057 + MGP_C57BL6NJ_P0079283 Tpra1 protein_coding protein_coding MGP_C57BL6NJ_T0079284.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92736323 92746066 + MGP_C57BL6NJ_P0079284 Tpra1 protein_coding protein_coding MGP_C57BL6NJ_T0079285.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92739459 92743127 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079286.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92739780 92741586 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079287.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92739782 92745573 + MGP_C57BL6NJ_P0079287 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079288.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92739800 92744646 + MGP_C57BL6NJ_P0079288 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079289.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92739866 92744474 + MGP_C57BL6NJ_P0079289 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079290.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92741800 92746064 + MGP_C57BL6NJ_P0079290 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079291.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92741814 92744927 + MGP_C57BL6NJ_P0079291 Tpra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079292.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92742013 92743353 + Tpra1 protein_coding processed_transcript MGP_C57BL6NJ_T0079293.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92742013 92743369 + Tpra1 protein_coding retained_intron MGP_C57BL6NJ_T0079294.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92743983 92744775 + Tpra1 protein_coding retained_intron MGP_C57BL6NJ_T0079295.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92744048 92744324 + Tpra1 protein_coding retained_intron MGP_C57BL6NJ_T0079296.1 MGP_C57BL6NJ_G0031453.1 mouse_genomes_project 6 92744424 92745581 + Tpra1 protein_coding retained_intron MGP_C57BL6NJ_T0016093.1 MGP_C57BL6NJ_G0014138.1 mouse_genomes_project 6 155530813 155531095 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011880.1 MGP_C57BL6NJ_G0009965.1 mouse_genomes_project 6 1160312 1160639 + Gm24442 misc_RNA misc_RNA MGP_C57BL6NJ_T0002107.1 MGP_C57BL6NJ_G0001998.1 mouse_genomes_project 6 45142491 45143050 + TEC TEC MGP_C57BL6NJ_T0101784.1 MGP_C57BL6NJ_G0039830.1 mouse_genomes_project 6 38282674 38282800 + Gm23010 snoRNA snoRNA MGP_C57BL6NJ_T0077635.1 MGP_C57BL6NJ_G0031061.1 mouse_genomes_project 6 40767416 40772229 - MGP_C57BL6NJ_P0077635 Try5 protein_coding protein_coding MGP_C57BL6NJ_T0008809.1 MGP_C57BL6NJ_G0007121.1 mouse_genomes_project 6 73721199 73727676 - Gm44175 lincRNA lincRNA MGP_C57BL6NJ_T0000212.1 MGP_C57BL6NJ_G0000157.1 mouse_genomes_project 6 69757903 69758674 + MGP_C57BL6NJ_P0000212 Igkv1-122 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002081.1 MGP_C57BL6NJ_G0001972.1 mouse_genomes_project 6 28531778 28535389 - TEC TEC MGP_C57BL6NJ_T0008841.1 MGP_C57BL6NJ_G0007147.1 mouse_genomes_project 6 91417864 91432774 - 1810020O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0015716.1 MGP_C57BL6NJ_G0013761.1 mouse_genomes_project 6 39954652 39958302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077566.1 MGP_C57BL6NJ_G0031037.1 mouse_genomes_project 6 38926162 38938318 + MGP_C57BL6NJ_P0077566 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005126.1 MGP_C57BL6NJ_G0004390.1 mouse_genomes_project 6 55018365 55027839 - Gm44026 antisense antisense MGP_C57BL6NJ_T0079129.1 MGP_C57BL6NJ_G0031426.1 mouse_genomes_project 6 91110915 91117056 + MGP_C57BL6NJ_P0079129 Gkn2 protein_coding protein_coding MGP_C57BL6NJ_T0080114.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764272 123770944 - MGP_C57BL6NJ_P0080114 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080115.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764273 123770587 - MGP_C57BL6NJ_P0080115 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080116.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764273 123770587 - MGP_C57BL6NJ_P0080116 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080117.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764273 123770587 - MGP_C57BL6NJ_P0080117 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080118.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764273 123770587 - MGP_C57BL6NJ_P0080118 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080119.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123764442 123770587 - MGP_C57BL6NJ_P0080119 Fxyd4 protein_coding protein_coding MGP_C57BL6NJ_T0080120.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123765556 123770587 - Fxyd4 protein_coding retained_intron MGP_C57BL6NJ_T0080121.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123765566 123769205 - Fxyd4 protein_coding retained_intron MGP_C57BL6NJ_T0080122.1 MGP_C57BL6NJ_G0031619.1 mouse_genomes_project 6 123765568 123770587 - Fxyd4 protein_coding retained_intron MGP_C57BL6NJ_T0008816.1 MGP_C57BL6NJ_G0007128.1 mouse_genomes_project 6 78694598 78703271 - Gm44113 lincRNA lincRNA MGP_C57BL6NJ_T0005236.1 MGP_C57BL6NJ_G0004462.1 mouse_genomes_project 6 127058086 127095508 + Gm43915 antisense antisense MGP_C57BL6NJ_T0002322.1 MGP_C57BL6NJ_G0002212.1 mouse_genomes_project 6 155320976 155323325 - TEC TEC MGP_C57BL6NJ_T0080418.1 MGP_C57BL6NJ_G0031672.1 mouse_genomes_project 6 129295400 129304424 - MGP_C57BL6NJ_P0080418 C3ar1 protein_coding protein_coding MGP_C57BL6NJ_T0076749.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331324 5553398 + MGP_C57BL6NJ_P0076749 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076750.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331386 5506790 + MGP_C57BL6NJ_P0076750 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076751.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331418 5508416 + MGP_C57BL6NJ_P0076751 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076752.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331464 5506931 + MGP_C57BL6NJ_P0076752 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076753.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331466 5508412 + MGP_C57BL6NJ_P0076753 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076754.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5331480 5354317 + Umad1 protein_coding processed_transcript MGP_C57BL6NJ_T0076756.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5343254 5508419 + MGP_C57BL6NJ_P0076756 Umad1 protein_coding protein_coding MGP_C57BL6NJ_T0076757.1 MGP_C57BL6NJ_G0030886.1 mouse_genomes_project 6 5499329 5507890 + Umad1 protein_coding processed_transcript MGP_C57BL6NJ_T0080854.1 MGP_C57BL6NJ_G0031764.1 mouse_genomes_project 6 135472607 135481331 - Fkbp4 protein_coding retained_intron MGP_C57BL6NJ_T0080855.1 MGP_C57BL6NJ_G0031764.1 mouse_genomes_project 6 135472762 135481331 - MGP_C57BL6NJ_P0080855 Fkbp4 protein_coding protein_coding MGP_C57BL6NJ_T0080856.1 MGP_C57BL6NJ_G0031764.1 mouse_genomes_project 6 135475868 135480794 - MGP_C57BL6NJ_P0080856 Fkbp4 protein_coding protein_coding MGP_C57BL6NJ_T0080857.1 MGP_C57BL6NJ_G0031764.1 mouse_genomes_project 6 135476415 135480307 - MGP_C57BL6NJ_P0080857 Fkbp4 protein_coding protein_coding MGP_C57BL6NJ_T0079314.1 MGP_C57BL6NJ_G0031459.1 mouse_genomes_project 6 93745866 93746964 - MGP_C57BL6NJ_P0079314 Vmn1r42 protein_coding protein_coding MGP_C57BL6NJ_T0016100.1 MGP_C57BL6NJ_G0014145.1 mouse_genomes_project 6 158097048 158097219 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015998.1 MGP_C57BL6NJ_G0014043.1 mouse_genomes_project 6 129614634 129614728 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011900.1 MGP_C57BL6NJ_G0009985.1 mouse_genomes_project 6 47677304 47677381 + Gm25283 misc_RNA misc_RNA MGP_C57BL6NJ_T0081022.1 MGP_C57BL6NJ_G0031827.1 mouse_genomes_project 6 140557816 140558746 + MGP_C57BL6NJ_P0081022 Tas2r124 protein_coding protein_coding MGP_C57BL6NJ_T0008779.1 MGP_C57BL6NJ_G0007097.1 mouse_genomes_project 6 52468714 52479614 + Halr1 lincRNA lincRNA MGP_C57BL6NJ_T0008780.1 MGP_C57BL6NJ_G0007097.1 mouse_genomes_project 6 52468759 52480770 + Halr1 lincRNA lincRNA MGP_C57BL6NJ_T0008781.1 MGP_C57BL6NJ_G0007097.1 mouse_genomes_project 6 52468768 52479274 + Halr1 lincRNA lincRNA MGP_C57BL6NJ_T0000457.1 MGP_C57BL6NJ_G0000376.1 mouse_genomes_project 6 72627648 72627882 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0080943.1 MGP_C57BL6NJ_G0031788.1 mouse_genomes_project 6 136701503 136710386 + MGP_C57BL6NJ_P0080943 Gabarapl1 protein_coding protein_coding MGP_C57BL6NJ_T0005225.1 MGP_C57BL6NJ_G0004451.1 mouse_genomes_project 6 119141244 119143372 - Gm44199 antisense antisense MGP_C57BL6NJ_T0015929.1 MGP_C57BL6NJ_G0013974.1 mouse_genomes_project 6 107950103 107950256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078678.1 MGP_C57BL6NJ_G0031343.1 mouse_genomes_project 6 85617873 85620904 + Tacr1 protein_coding retained_intron MGP_C57BL6NJ_T0078679.1 MGP_C57BL6NJ_G0031343.1 mouse_genomes_project 6 85618014 85782301 + MGP_C57BL6NJ_P0078679 Tacr1 protein_coding protein_coding MGP_C57BL6NJ_T0078680.1 MGP_C57BL6NJ_G0031343.1 mouse_genomes_project 6 85618326 85782306 + MGP_C57BL6NJ_P0078680 Tacr1 protein_coding protein_coding MGP_C57BL6NJ_T0079248.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92666728 92672715 - MGP_C57BL6NJ_P0079248 Abtb1 protein_coding protein_coding MGP_C57BL6NJ_T0079249.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92666738 92672709 - MGP_C57BL6NJ_P0079249 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079250.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92666962 92672799 - MGP_C57BL6NJ_P0079250 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079251.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92667092 92669530 - Abtb1 protein_coding retained_intron MGP_C57BL6NJ_T0079252.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92667237 92669681 - MGP_C57BL6NJ_P0079252 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079253.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92667499 92669895 - MGP_C57BL6NJ_P0079253 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079254.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92668929 92669970 - MGP_C57BL6NJ_P0079254 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079255.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92669268 92672681 - MGP_C57BL6NJ_P0079255 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079256.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92669471 92670404 - Abtb1 protein_coding retained_intron MGP_C57BL6NJ_T0079257.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92669659 92672697 - MGP_C57BL6NJ_P0079257 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079258.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92669832 92672645 - Abtb1 protein_coding retained_intron MGP_C57BL6NJ_T0079259.1 MGP_C57BL6NJ_G0031450.1 mouse_genomes_project 6 92670479 92672750 - MGP_C57BL6NJ_P0079259 Abtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0015787.1 MGP_C57BL6NJ_G0013832.1 mouse_genomes_project 6 63530321 63531857 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080721.1 MGP_C57BL6NJ_G0031733.1 mouse_genomes_project 6 132218791 132258399 - MGP_C57BL6NJ_P0080721 Cd9 protein_coding protein_coding MGP_C57BL6NJ_T0080722.1 MGP_C57BL6NJ_G0031733.1 mouse_genomes_project 6 132219114 132239789 - Cd9 protein_coding processed_transcript MGP_C57BL6NJ_T0080723.1 MGP_C57BL6NJ_G0031733.1 mouse_genomes_project 6 132220641 132221550 - Cd9 protein_coding retained_intron MGP_C57BL6NJ_T0079136.1 MGP_C57BL6NJ_G0031430.1 mouse_genomes_project 6 91314996 91327160 - MGP_C57BL6NJ_P0079136 Prokr1 protein_coding protein_coding MGP_C57BL6NJ_T0079137.1 MGP_C57BL6NJ_G0031430.1 mouse_genomes_project 6 91314997 91327137 - MGP_C57BL6NJ_P0079137 Prokr1 protein_coding protein_coding MGP_C57BL6NJ_T0079138.1 MGP_C57BL6NJ_G0031430.1 mouse_genomes_project 6 91324809 91327136 - MGP_C57BL6NJ_P0079138 Prokr1 protein_coding protein_coding MGP_C57BL6NJ_T0015899.1 MGP_C57BL6NJ_G0013944.1 mouse_genomes_project 6 95618136 95618531 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008734.1 MGP_C57BL6NJ_G0007066.1 mouse_genomes_project 6 30560569 30688605 + Gm13849 lincRNA lincRNA MGP_C57BL6NJ_T0077005.1 MGP_C57BL6NJ_G0030933.1 mouse_genomes_project 6 22864066 22871713 + MGP_C57BL6NJ_P0077005 Lmod2 protein_coding protein_coding MGP_C57BL6NJ_T0008878.1 MGP_C57BL6NJ_G0007173.1 mouse_genomes_project 6 106555338 106562194 + Gm44176 lincRNA lincRNA MGP_C57BL6NJ_T0015808.1 MGP_C57BL6NJ_G0013853.1 mouse_genomes_project 6 67355621 67356186 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002703.1 MGP_C57BL6NJ_G0002583.1 mouse_genomes_project 6 41056030 41056084 + Trbj1-3 TR_J_gene processed_transcript MGP_C57BL6NJ_T0002704.1 MGP_C57BL6NJ_G0002583.1 mouse_genomes_project 6 41056030 41056080 + MGP_C57BL6NJ_P0002704 Trbj1-3 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0011000.1 MGP_C57BL6NJ_G0009085.1 mouse_genomes_project 6 20897663 20897760 - Gm23961 miRNA miRNA MGP_C57BL6NJ_T0000267.1 MGP_C57BL6NJ_G0000200.1 mouse_genomes_project 6 72109718 72110231 - MGP_C57BL6NJ_P0000267 Igkv18-36 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000268.1 MGP_C57BL6NJ_G0000200.1 mouse_genomes_project 6 72109718 72110231 - MGP_C57BL6NJ_P0000268 Igkv18-36 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002283.1 MGP_C57BL6NJ_G0002173.1 mouse_genomes_project 6 134424685 134427012 + TEC TEC MGP_C57BL6NJ_T0005227.1 MGP_C57BL6NJ_G0004453.1 mouse_genomes_project 6 119258585 119259736 + Gm26982 antisense antisense MGP_C57BL6NJ_T0005287.1 MGP_C57BL6NJ_G0004506.1 mouse_genomes_project 6 154216043 154223298 + Gm15543 antisense antisense MGP_C57BL6NJ_T0005113.1 MGP_C57BL6NJ_G0004383.1 mouse_genomes_project 6 52529876 52531503 + Hotairm1 antisense antisense MGP_C57BL6NJ_T0005114.1 MGP_C57BL6NJ_G0004383.1 mouse_genomes_project 6 52531406 52535099 + Hotairm1 antisense antisense MGP_C57BL6NJ_T0005115.1 MGP_C57BL6NJ_G0004383.1 mouse_genomes_project 6 52531498 52535000 + Hotairm1 antisense antisense MGP_C57BL6NJ_T0077423.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34139947 34213923 + MGP_C57BL6NJ_P0077423 protein_coding protein_coding MGP_C57BL6NJ_T0077424.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34139956 34213923 + MGP_C57BL6NJ_P0077424 protein_coding protein_coding MGP_C57BL6NJ_T0077425.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34140142 34168853 + protein_coding retained_intron MGP_C57BL6NJ_T0077426.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34140155 34213917 + MGP_C57BL6NJ_P0077426 protein_coding protein_coding MGP_C57BL6NJ_T0077427.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34168246 34213923 + protein_coding processed_transcript MGP_C57BL6NJ_T0077428.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34187689 34204496 + protein_coding retained_intron MGP_C57BL6NJ_T0077429.1 MGP_C57BL6NJ_G0031006.1 mouse_genomes_project 6 34211500 34212799 + protein_coding retained_intron MGP_C57BL6NJ_T0015772.1 MGP_C57BL6NJ_G0013817.1 mouse_genomes_project 6 58862525 58862963 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008669.1 MGP_C57BL6NJ_G0007026.1 mouse_genomes_project 6 796420 812908 - Gm43986 lincRNA lincRNA MGP_C57BL6NJ_T0081202.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145854982 146041718 - MGP_C57BL6NJ_P0081202 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081203.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145855405 145950801 - MGP_C57BL6NJ_P0081203 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081204.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145855914 146041718 - MGP_C57BL6NJ_P0081204 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081205.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145878202 146040716 - MGP_C57BL6NJ_P0081205 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081206.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145892903 145898381 - Eps8 protein_coding processed_transcript MGP_C57BL6NJ_T0081207.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145895634 146047285 - MGP_C57BL6NJ_P0081207 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081208.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145895658 145898324 - Eps8 protein_coding retained_intron MGP_C57BL6NJ_T0081209.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145901482 145969782 - MGP_C57BL6NJ_P0081209 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081210.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145906015 146041662 - Eps8 protein_coding processed_transcript MGP_C57BL6NJ_T0081211.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145913373 145916710 - Eps8 protein_coding retained_intron MGP_C57BL6NJ_T0081212.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145916258 146040716 - MGP_C57BL6NJ_P0081212 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081213.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145917957 146041675 - MGP_C57BL6NJ_P0081213 Eps8 protein_coding protein_coding MGP_C57BL6NJ_T0081214.1 MGP_C57BL6NJ_G0031880.1 mouse_genomes_project 6 145946923 145950543 - Eps8 protein_coding retained_intron MGP_C57BL6NJ_T0002057.1 MGP_C57BL6NJ_G0001948.1 mouse_genomes_project 6 3860919 3864432 - TEC TEC MGP_C57BL6NJ_T0015792.1 MGP_C57BL6NJ_G0013837.1 mouse_genomes_project 6 65082248 65082464 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078097.1 MGP_C57BL6NJ_G0031193.1 mouse_genomes_project 6 54388884 54498533 - MGP_C57BL6NJ_P0078097 Cpvl protein_coding protein_coding MGP_C57BL6NJ_T0078098.1 MGP_C57BL6NJ_G0031193.1 mouse_genomes_project 6 54388984 54498524 - MGP_C57BL6NJ_P0078098 Cpvl protein_coding protein_coding MGP_C57BL6NJ_T0078099.1 MGP_C57BL6NJ_G0031193.1 mouse_genomes_project 6 54388984 54498524 - MGP_C57BL6NJ_P0078099 Cpvl protein_coding protein_coding MGP_C57BL6NJ_T0015964.1 MGP_C57BL6NJ_G0014009.1 mouse_genomes_project 6 120331627 120332060 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002714.1 MGP_C57BL6NJ_G0002592.1 mouse_genomes_project 6 41065100 41065149 + MGP_C57BL6NJ_P0002714 Trbj2-5 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0080779.1 MGP_C57BL6NJ_G0031746.1 mouse_genomes_project 6 133961093 133969608 + MGP_C57BL6NJ_P0080779 Fgf23 protein_coding protein_coding MGP_C57BL6NJ_T0015770.1 MGP_C57BL6NJ_G0013815.1 mouse_genomes_project 6 58439076 58439329 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080304.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127030937 127104078 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080305.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127030956 127080729 - MGP_C57BL6NJ_P0080305 Mical3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0080306.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127034011 127057878 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080307.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127034055 127034766 - Mical3 protein_coding retained_intron MGP_C57BL6NJ_T0080308.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127049925 127056966 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080309.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127057585 127104078 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080310.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127059254 127065414 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080311.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127095325 127125605 - MGP_C57BL6NJ_P0080311 Mical3 protein_coding protein_coding MGP_C57BL6NJ_T0080312.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127108165 127192471 - MGP_C57BL6NJ_P0080312 Mical3 protein_coding protein_coding MGP_C57BL6NJ_T0080313.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127108165 127192469 - MGP_C57BL6NJ_P0080313 Mical3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080314.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127108166 127125620 - MGP_C57BL6NJ_P0080314 Mical3 protein_coding protein_coding MGP_C57BL6NJ_T0080315.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127120002 127222241 - Mical3 protein_coding retained_intron MGP_C57BL6NJ_T0080316.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127120002 127125642 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080317.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127125563 127245499 - MGP_C57BL6NJ_P0080317 Mical3 protein_coding protein_coding MGP_C57BL6NJ_T0080318.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127125742 127129119 - Mical3 protein_coding retained_intron MGP_C57BL6NJ_T0080319.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127128105 127128764 - Mical3 protein_coding processed_transcript MGP_C57BL6NJ_T0080320.1 MGP_C57BL6NJ_G0031650.1 mouse_genomes_project 6 127132293 127134116 - Mical3 protein_coding retained_intron MGP_C57BL6NJ_T0076745.1 MGP_C57BL6NJ_G0030884.1 mouse_genomes_project 6 5275448 5302492 + MGP_C57BL6NJ_P0076745 Mios protein_coding protein_coding MGP_C57BL6NJ_T0076746.1 MGP_C57BL6NJ_G0030884.1 mouse_genomes_project 6 5292855 5302486 + Mios protein_coding retained_intron MGP_C57BL6NJ_T0076747.1 MGP_C57BL6NJ_G0030884.1 mouse_genomes_project 6 5295725 5302486 + Mios protein_coding retained_intron MGP_C57BL6NJ_T0077098.1 MGP_C57BL6NJ_G0030956.1 mouse_genomes_project 6 27891668 27899253 + Fam71f1 protein_coding processed_transcript MGP_C57BL6NJ_T0077099.1 MGP_C57BL6NJ_G0030956.1 mouse_genomes_project 6 27891668 27908546 + MGP_C57BL6NJ_P0077099 Fam71f1 protein_coding protein_coding MGP_C57BL6NJ_T0077100.1 MGP_C57BL6NJ_G0030956.1 mouse_genomes_project 6 27891685 27908381 + MGP_C57BL6NJ_P0077100 Fam71f1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077101.1 MGP_C57BL6NJ_G0030956.1 mouse_genomes_project 6 27891685 27908381 + MGP_C57BL6NJ_P0077101 Fam71f1 protein_coding protein_coding MGP_C57BL6NJ_T0077102.1 MGP_C57BL6NJ_G0030956.1 mouse_genomes_project 6 27891727 27908381 + MGP_C57BL6NJ_P0077102 Fam71f1 protein_coding protein_coding MGP_C57BL6NJ_T0000445.1 MGP_C57BL6NJ_G0000364.1 mouse_genomes_project 6 71659932 71660380 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0002075.1 MGP_C57BL6NJ_G0001966.1 mouse_genomes_project 6 26731873 26738877 - TEC TEC MGP_C57BL6NJ_T0102538.1 MGP_C57BL6NJ_G0040385.1 mouse_genomes_project 6 137913965 138596683 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102539.1 MGP_C57BL6NJ_G0040385.1 mouse_genomes_project 6 137914028 138597645 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0002876.1 MGP_C57BL6NJ_G0002730.1 mouse_genomes_project 6 40558416 40558705 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0080141.1 MGP_C57BL6NJ_G0031626.1 mouse_genomes_project 6 124374630 124444454 - MGP_C57BL6NJ_P0080141 Ankrd26 protein_coding protein_coding MGP_C57BL6NJ_T0080142.1 MGP_C57BL6NJ_G0031626.1 mouse_genomes_project 6 124397377 124402430 - Ankrd26 protein_coding retained_intron MGP_C57BL6NJ_T0080143.1 MGP_C57BL6NJ_G0031626.1 mouse_genomes_project 6 124421984 124431327 - Ankrd26 protein_coding retained_intron MGP_C57BL6NJ_T0002211.1 MGP_C57BL6NJ_G0002102.1 mouse_genomes_project 6 92611592 92614714 - TEC TEC MGP_C57BL6NJ_T0079185.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91674071 91697590 + MGP_C57BL6NJ_P0079185 Hmces protein_coding protein_coding MGP_C57BL6NJ_T0079186.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91674086 91694009 + Hmces protein_coding processed_transcript MGP_C57BL6NJ_T0079187.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91674094 91675140 + Hmces protein_coding processed_transcript MGP_C57BL6NJ_T0079188.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91674115 91681688 + MGP_C57BL6NJ_P0079188 Hmces protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079189.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91674442 91697590 + MGP_C57BL6NJ_P0079189 Hmces protein_coding protein_coding MGP_C57BL6NJ_T0079190.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91678060 91694386 + Hmces protein_coding processed_transcript MGP_C57BL6NJ_T0079191.1 MGP_C57BL6NJ_G0031439.1 mouse_genomes_project 6 91693953 91697490 + Hmces protein_coding retained_intron MGP_C57BL6NJ_T0008763.1 MGP_C57BL6NJ_G0007084.1 mouse_genomes_project 6 48603128 48604021 - 1700026J14Rik lincRNA lincRNA MGP_C57BL6NJ_T0016089.1 MGP_C57BL6NJ_G0014134.1 mouse_genomes_project 6 150913620 150914690 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018726.1 MGP_C57BL6NJ_G0016023.1 mouse_genomes_project 6 54498552 54541891 + 4921529L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018727.1 MGP_C57BL6NJ_G0016023.1 mouse_genomes_project 6 54498562 54501655 + 4921529L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018728.1 MGP_C57BL6NJ_G0016023.1 mouse_genomes_project 6 54498590 54534300 + 4921529L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018729.1 MGP_C57BL6NJ_G0016023.1 mouse_genomes_project 6 54534225 54542536 + 4921529L05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011048.1 MGP_C57BL6NJ_G0009133.1 mouse_genomes_project 6 113666214 113666275 + Mir7661 miRNA miRNA MGP_C57BL6NJ_T0101835.1 MGP_C57BL6NJ_G0039881.1 mouse_genomes_project 6 131402251 131402522 + Gm23547 snoRNA snoRNA MGP_C57BL6NJ_T0011041.1 MGP_C57BL6NJ_G0009126.1 mouse_genomes_project 6 98794285 98794337 - Mir7041 miRNA miRNA MGP_C57BL6NJ_T0077465.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37234427 37237509 - Atp6v0a4 protein_coding processed_transcript MGP_C57BL6NJ_T0077466.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37234427 37302698 - MGP_C57BL6NJ_P0077466 Atp6v0a4 protein_coding protein_coding MGP_C57BL6NJ_T0077467.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37234427 37318652 - MGP_C57BL6NJ_P0077467 Atp6v0a4 protein_coding protein_coding MGP_C57BL6NJ_T0077468.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37237228 37242437 - Atp6v0a4 protein_coding retained_intron MGP_C57BL6NJ_T0077469.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37270028 37274486 - Atp6v0a4 protein_coding retained_intron MGP_C57BL6NJ_T0077470.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37280707 37289175 - Atp6v0a4 protein_coding retained_intron MGP_C57BL6NJ_T0077471.1 MGP_C57BL6NJ_G0031017.1 mouse_genomes_project 6 37285668 37318555 - Atp6v0a4 protein_coding retained_intron MGP_C57BL6NJ_T0077343.1 MGP_C57BL6NJ_G0030994.1 mouse_genomes_project 6 33240486 33256851 + MGP_C57BL6NJ_P0077343 Akr1b8 protein_coding protein_coding MGP_C57BL6NJ_T0077344.1 MGP_C57BL6NJ_G0030994.1 mouse_genomes_project 6 33242482 33253627 + Akr1b8 protein_coding processed_transcript MGP_C57BL6NJ_T0103268.1 MGP_C57BL6NJ_G0041062.1 mouse_genomes_project 6 85067888 85073842 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011891.1 MGP_C57BL6NJ_G0009976.1 mouse_genomes_project 6 15428165 15428351 + Gm28008 misc_RNA misc_RNA MGP_C57BL6NJ_T0011883.1 MGP_C57BL6NJ_G0009968.1 mouse_genomes_project 6 3879336 3879482 - Dlx6os1 misc_RNA misc_RNA MGP_C57BL6NJ_T0080590.1 MGP_C57BL6NJ_G0031710.1 mouse_genomes_project 6 131595794 131605984 - MGP_C57BL6NJ_P0080590 Lag3 protein_coding protein_coding MGP_C57BL6NJ_T0080591.1 MGP_C57BL6NJ_G0031710.1 mouse_genomes_project 6 131602886 131604330 - Lag3 protein_coding processed_transcript MGP_C57BL6NJ_T0081360.1 MGP_C57BL6NJ_G0031909.1 mouse_genomes_project 6 151253787 151307573 - MGP_C57BL6NJ_P0081360 Gys2 protein_coding protein_coding MGP_C57BL6NJ_T0081361.1 MGP_C57BL6NJ_G0031909.1 mouse_genomes_project 6 151253791 151254794 - MGP_C57BL6NJ_P0081361 Gys2 protein_coding protein_coding MGP_C57BL6NJ_T0099129.1 MGP_C57BL6NJ_G0037193.1 mouse_genomes_project 6 21715915 21716026 + Gm27959 rRNA rRNA MGP_C57BL6NJ_T0102541.1 MGP_C57BL6NJ_G0040387.1 mouse_genomes_project 6 138073076 138256004 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0077945.1 MGP_C57BL6NJ_G0031157.1 mouse_genomes_project 6 49203820 49345105 - MGP_C57BL6NJ_P0077945 Igf2bp3 protein_coding protein_coding MGP_C57BL6NJ_T0077946.1 MGP_C57BL6NJ_G0031157.1 mouse_genomes_project 6 49206715 49212798 - Igf2bp3 protein_coding retained_intron MGP_C57BL6NJ_T0077947.1 MGP_C57BL6NJ_G0031157.1 mouse_genomes_project 6 49211697 49344309 - Igf2bp3 protein_coding retained_intron MGP_C57BL6NJ_T0077948.1 MGP_C57BL6NJ_G0031157.1 mouse_genomes_project 6 49225997 49229698 - Igf2bp3 protein_coding processed_transcript MGP_C57BL6NJ_T0077949.1 MGP_C57BL6NJ_G0031157.1 mouse_genomes_project 6 49290824 49344852 - Igf2bp3 protein_coding processed_transcript MGP_C57BL6NJ_T0008939.1 MGP_C57BL6NJ_G0007222.1 mouse_genomes_project 6 148146602 148148629 - Gm44272 lincRNA lincRNA MGP_C57BL6NJ_T0080334.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127460137 127485926 + MGP_C57BL6NJ_P0080334 Slc6a12 protein_coding protein_coding MGP_C57BL6NJ_T0080335.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127460460 127464669 + MGP_C57BL6NJ_P0080335 Slc6a12 protein_coding protein_coding MGP_C57BL6NJ_T0080336.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127463679 127486329 + MGP_C57BL6NJ_P0080336 Slc6a12 protein_coding protein_coding MGP_C57BL6NJ_T0080337.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127464480 127475920 + MGP_C57BL6NJ_P0080337 Slc6a12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080338.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127464480 127485926 + MGP_C57BL6NJ_P0080338 Slc6a12 protein_coding protein_coding MGP_C57BL6NJ_T0080339.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127477413 127482502 + Slc6a12 protein_coding retained_intron MGP_C57BL6NJ_T0080340.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127477426 127483918 + Slc6a12 protein_coding retained_intron MGP_C57BL6NJ_T0080341.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127477511 127485926 + MGP_C57BL6NJ_P0080341 Slc6a12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080342.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127477511 127485926 + MGP_C57BL6NJ_P0080342 Slc6a12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080343.1 MGP_C57BL6NJ_G0031655.1 mouse_genomes_project 6 127479558 127484448 + Slc6a12 protein_coding retained_intron MGP_C57BL6NJ_T0008844.1 MGP_C57BL6NJ_G0007150.1 mouse_genomes_project 6 92986692 92994646 + Gm1965 lincRNA lincRNA MGP_C57BL6NJ_T0008845.1 MGP_C57BL6NJ_G0007150.1 mouse_genomes_project 6 92986703 92994629 + Gm1965 lincRNA lincRNA MGP_C57BL6NJ_T0008846.1 MGP_C57BL6NJ_G0007150.1 mouse_genomes_project 6 92986703 92994045 + Gm1965 lincRNA lincRNA MGP_C57BL6NJ_T0008847.1 MGP_C57BL6NJ_G0007150.1 mouse_genomes_project 6 92986703 92994664 + Gm1965 lincRNA lincRNA MGP_C57BL6NJ_T0016041.1 MGP_C57BL6NJ_G0014086.1 mouse_genomes_project 6 138281022 138281253 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099508.1 MGP_C57BL6NJ_G0037561.1 mouse_genomes_project 6 153633878 153636172 - Sox5it sense_intronic sense_intronic MGP_C57BL6NJ_T0008867.1 MGP_C57BL6NJ_G0007165.1 mouse_genomes_project 6 104426232 104438678 - Gm43067 lincRNA lincRNA MGP_C57BL6NJ_T0002170.1 MGP_C57BL6NJ_G0002061.1 mouse_genomes_project 6 83332695 83336245 + TEC TEC MGP_C57BL6NJ_T0076719.1 MGP_C57BL6NJ_G0030876.1 mouse_genomes_project 6 3552155 3573508 - MGP_C57BL6NJ_P0076719 Shfm1 protein_coding protein_coding MGP_C57BL6NJ_T0076720.1 MGP_C57BL6NJ_G0030876.1 mouse_genomes_project 6 3571263 3573513 - Shfm1 protein_coding retained_intron MGP_C57BL6NJ_T0015697.1 MGP_C57BL6NJ_G0013742.1 mouse_genomes_project 6 29440215 29440446 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101820.1 MGP_C57BL6NJ_G0039866.1 mouse_genomes_project 6 121385405 121385543 - Gm24008 snoRNA snoRNA MGP_C57BL6NJ_T0008860.1 MGP_C57BL6NJ_G0007160.1 mouse_genomes_project 6 95458523 95459292 + 1810044D09Rik lincRNA lincRNA MGP_C57BL6NJ_T0016063.1 MGP_C57BL6NJ_G0014108.1 mouse_genomes_project 6 140563791 140564062 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016049.1 MGP_C57BL6NJ_G0014094.1 mouse_genomes_project 6 138840254 138840990 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080911.1 MGP_C57BL6NJ_G0031779.1 mouse_genomes_project 6 136419163 136427275 - MGP_C57BL6NJ_P0080911 Cd69 protein_coding protein_coding MGP_C57BL6NJ_T0080912.1 MGP_C57BL6NJ_G0031779.1 mouse_genomes_project 6 136420097 136427205 - MGP_C57BL6NJ_P0080912 Cd69 protein_coding protein_coding MGP_C57BL6NJ_T0080913.1 MGP_C57BL6NJ_G0031779.1 mouse_genomes_project 6 136421289 136427208 - Cd69 protein_coding retained_intron MGP_C57BL6NJ_T0080914.1 MGP_C57BL6NJ_G0031779.1 mouse_genomes_project 6 136422240 136427208 - Cd69 protein_coding retained_intron MGP_C57BL6NJ_T0080915.1 MGP_C57BL6NJ_G0031779.1 mouse_genomes_project 6 136423003 136427208 - Cd69 protein_coding retained_intron MGP_C57BL6NJ_T0077667.1 MGP_C57BL6NJ_G0031077.1 mouse_genomes_project 6 41579287 41583645 + MGP_C57BL6NJ_P0077667 Sva protein_coding protein_coding MGP_C57BL6NJ_T0077668.1 MGP_C57BL6NJ_G0031077.1 mouse_genomes_project 6 41579287 41583651 + MGP_C57BL6NJ_P0077668 Sva protein_coding protein_coding MGP_C57BL6NJ_T0077670.1 MGP_C57BL6NJ_G0031079.1 mouse_genomes_project 6 41736998 41737958 + MGP_C57BL6NJ_P0077670 Tas2r144 protein_coding protein_coding MGP_C57BL6NJ_T0015983.1 MGP_C57BL6NJ_G0014028.1 mouse_genomes_project 6 126998799 127001103 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081034.1 MGP_C57BL6NJ_G0031839.1 mouse_genomes_project 6 140876431 140877370 - MGP_C57BL6NJ_P0081034 Tas2r103 protein_coding protein_coding MGP_C57BL6NJ_T0000428.1 MGP_C57BL6NJ_G0000347.1 mouse_genomes_project 6 70985754 70985954 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0015984.1 MGP_C57BL6NJ_G0014029.1 mouse_genomes_project 6 127229745 127231172 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078231.1 MGP_C57BL6NJ_G0031227.1 mouse_genomes_project 6 57904635 57907197 + MGP_C57BL6NJ_P0078231 Vmn1r11 protein_coding protein_coding MGP_C57BL6NJ_T0076815.1 MGP_C57BL6NJ_G0030898.1 mouse_genomes_project 6 11322959 11328408 - MGP_C57BL6NJ_P0076815 Gpr85 protein_coding protein_coding MGP_C57BL6NJ_T0076816.1 MGP_C57BL6NJ_G0030898.1 mouse_genomes_project 6 11323569 11326931 - MGP_C57BL6NJ_P0076816 Gpr85 protein_coding protein_coding MGP_C57BL6NJ_T0076817.1 MGP_C57BL6NJ_G0030898.1 mouse_genomes_project 6 11323578 11325743 - MGP_C57BL6NJ_P0076817 Gpr85 protein_coding protein_coding MGP_C57BL6NJ_T0076818.1 MGP_C57BL6NJ_G0030898.1 mouse_genomes_project 6 11326575 11327961 - Gpr85 protein_coding processed_transcript MGP_C57BL6NJ_T0008830.1 MGP_C57BL6NJ_G0007137.1 mouse_genomes_project 6 87655176 87719895 + Gm44127 lincRNA lincRNA MGP_C57BL6NJ_T0008970.1 MGP_C57BL6NJ_G0007244.1 mouse_genomes_project 6 158111272 158116592 - Gm43913 lincRNA lincRNA MGP_C57BL6NJ_T0015745.1 MGP_C57BL6NJ_G0013790.1 mouse_genomes_project 6 49065487 49065971 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081255.1 MGP_C57BL6NJ_G0031886.1 mouse_genomes_project 6 147152905 147154361 - MGP_C57BL6NJ_P0081255 Igbp1b protein_coding protein_coding MGP_C57BL6NJ_T0101797.1 MGP_C57BL6NJ_G0039843.1 mouse_genomes_project 6 60021415 60021547 + Gm22367 snoRNA snoRNA MGP_C57BL6NJ_T0016066.1 MGP_C57BL6NJ_G0014111.1 mouse_genomes_project 6 140843374 140843729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080454.1 MGP_C57BL6NJ_G0031685.1 mouse_genomes_project 6 130265389 130308512 + MGP_C57BL6NJ_P0080454 Vmn2r24 protein_coding protein_coding MGP_C57BL6NJ_T0005179.1 MGP_C57BL6NJ_G0004422.1 mouse_genomes_project 6 91005241 91007247 + Gm44418 antisense antisense MGP_C57BL6NJ_T0079619.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108318697 108571301 + MGP_C57BL6NJ_P0079619 Chl1 protein_coding protein_coding MGP_C57BL6NJ_T0079620.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108319073 108461602 + Chl1 protein_coding retained_intron MGP_C57BL6NJ_T0079621.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108319179 108550371 + MGP_C57BL6NJ_P0079621 Chl1 protein_coding protein_coding MGP_C57BL6NJ_T0079622.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108319285 108546847 + MGP_C57BL6NJ_P0079622 Chl1 protein_coding protein_coding MGP_C57BL6NJ_T0079623.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108319441 108486940 + MGP_C57BL6NJ_P0079623 Chl1 protein_coding protein_coding MGP_C57BL6NJ_T0079624.1 MGP_C57BL6NJ_G0031530.1 mouse_genomes_project 6 108520385 108547204 + MGP_C57BL6NJ_P0079624 Chl1 protein_coding protein_coding MGP_C57BL6NJ_T0103246.1 MGP_C57BL6NJ_G0041040.1 mouse_genomes_project 6 42818101 42818627 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077911.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48938592 48945863 - MGP_C57BL6NJ_P0077911 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077912.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48939388 48945539 - MGP_C57BL6NJ_P0077912 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077913.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48940211 48945856 - MGP_C57BL6NJ_P0077913 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077914.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48940211 48946274 - MGP_C57BL6NJ_P0077914 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077915.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48940213 48945526 - MGP_C57BL6NJ_P0077915 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077916.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48940280 48945373 - MGP_C57BL6NJ_P0077916 Tmem176b protein_coding protein_coding MGP_C57BL6NJ_T0077917.1 MGP_C57BL6NJ_G0031149.1 mouse_genomes_project 6 48940565 48945233 - Tmem176b protein_coding retained_intron MGP_C57BL6NJ_T0076623.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 211896 319707 + MGP_C57BL6NJ_P0076623 Vps50 protein_coding protein_coding MGP_C57BL6NJ_T0076624.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 211918 317286 + MGP_C57BL6NJ_P0076624 Vps50 protein_coding protein_coding MGP_C57BL6NJ_T0076625.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 211936 319491 + MGP_C57BL6NJ_P0076625 Vps50 protein_coding protein_coding MGP_C57BL6NJ_T0076626.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 231238 248608 + Vps50 protein_coding processed_transcript MGP_C57BL6NJ_T0076627.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 277747 319491 + Vps50 protein_coding retained_intron MGP_C57BL6NJ_T0076628.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 289468 319491 + Vps50 protein_coding processed_transcript MGP_C57BL6NJ_T0076629.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 302946 307953 + Vps50 protein_coding retained_intron MGP_C57BL6NJ_T0076630.1 MGP_C57BL6NJ_G0030858.1 mouse_genomes_project 6 308913 316438 + Vps50 protein_coding processed_transcript MGP_C57BL6NJ_T0005132.1 MGP_C57BL6NJ_G0004396.1 mouse_genomes_project 6 67238745 67249435 - Gm16838 antisense antisense MGP_C57BL6NJ_T0078346.1 MGP_C57BL6NJ_G0031266.1 mouse_genomes_project 6 66532341 66562917 - MGP_C57BL6NJ_P0078346 Hpgds protein_coding protein_coding MGP_C57BL6NJ_T0078347.1 MGP_C57BL6NJ_G0031266.1 mouse_genomes_project 6 66534085 66537967 - Hpgds protein_coding retained_intron MGP_C57BL6NJ_T0078348.1 MGP_C57BL6NJ_G0031266.1 mouse_genomes_project 6 66549092 66555384 - Hpgds protein_coding retained_intron MGP_C57BL6NJ_T0005193.1 MGP_C57BL6NJ_G0004432.1 mouse_genomes_project 6 93195169 93218168 + Gm26811 antisense antisense MGP_C57BL6NJ_T0002196.1 MGP_C57BL6NJ_G0002087.1 mouse_genomes_project 6 90979895 90983254 - TEC TEC MGP_C57BL6NJ_T0015942.1 MGP_C57BL6NJ_G0013987.1 mouse_genomes_project 6 114098078 114098496 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015978.1 MGP_C57BL6NJ_G0014023.1 mouse_genomes_project 6 124499818 124501417 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011016.1 MGP_C57BL6NJ_G0009101.1 mouse_genomes_project 6 47985076 47985169 + Gm24563 miRNA miRNA MGP_C57BL6NJ_T0000291.1 MGP_C57BL6NJ_G0000217.1 mouse_genomes_project 6 72680667 72680954 - MGP_C57BL6NJ_P0000291 Igkv6-13 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000292.1 MGP_C57BL6NJ_G0000217.1 mouse_genomes_project 6 72680667 72681203 - MGP_C57BL6NJ_P0000292 Igkv6-13 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002306.1 MGP_C57BL6NJ_G0002196.1 mouse_genomes_project 6 145500906 145501960 - TEC TEC MGP_C57BL6NJ_T0015654.1 MGP_C57BL6NJ_G0013699.1 mouse_genomes_project 6 11405310 11405604 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0077619.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40056254 40221974 + MGP_C57BL6NJ_P0077619 protein_coding protein_coding MGP_C57BL6NJ_T0077620.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40056254 40221974 + MGP_C57BL6NJ_P0077620 protein_coding protein_coding MGP_C57BL6NJ_T0077621.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40056254 40090079 + MGP_C57BL6NJ_P0077621 protein_coding protein_coding MGP_C57BL6NJ_T0077622.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40072395 40221135 + MGP_C57BL6NJ_P0077622 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077623.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40072395 40221135 + MGP_C57BL6NJ_P0077623 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0077624.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40105408 40217234 + MGP_C57BL6NJ_P0077624 protein_coding protein_coding MGP_C57BL6NJ_T0077625.1 MGP_C57BL6NJ_G0031053.1 mouse_genomes_project 6 40130058 40221306 + MGP_C57BL6NJ_P0077625 protein_coding protein_coding MGP_C57BL6NJ_T0015837.1 MGP_C57BL6NJ_G0013882.1 mouse_genomes_project 6 70103116 70103844 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008798.1 MGP_C57BL6NJ_G0007111.1 mouse_genomes_project 6 62211080 62215631 - Gm43893 lincRNA lincRNA MGP_C57BL6NJ_T0016044.1 MGP_C57BL6NJ_G0014089.1 mouse_genomes_project 6 138380600 138380784 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002193.1 MGP_C57BL6NJ_G0002084.1 mouse_genomes_project 6 90678578 90681480 + TEC TEC MGP_C57BL6NJ_T0002188.1 MGP_C57BL6NJ_G0002079.1 mouse_genomes_project 6 90173323 90175076 + TEC TEC MGP_C57BL6NJ_T0015650.1 MGP_C57BL6NJ_G0013695.1 mouse_genomes_project 6 9999996 10001701 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016021.1 MGP_C57BL6NJ_G0014066.1 mouse_genomes_project 6 135237661 135238860 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079502.1 MGP_C57BL6NJ_G0031505.1 mouse_genomes_project 6 99327447 99332118 + MGP_C57BL6NJ_P0079502 Kbtbd8 protein_coding protein_coding MGP_C57BL6NJ_T0079503.1 MGP_C57BL6NJ_G0031505.1 mouse_genomes_project 6 99328166 99338560 + MGP_C57BL6NJ_P0079503 Kbtbd8 protein_coding protein_coding MGP_C57BL6NJ_T0079504.1 MGP_C57BL6NJ_G0031505.1 mouse_genomes_project 6 99328191 99332025 + Kbtbd8 protein_coding processed_transcript MGP_C57BL6NJ_T0077251.1 MGP_C57BL6NJ_G0030978.1 mouse_genomes_project 6 29314273 29336444 + MGP_C57BL6NJ_P0077251 Cpa5 protein_coding protein_coding MGP_C57BL6NJ_T0077252.1 MGP_C57BL6NJ_G0030978.1 mouse_genomes_project 6 29314314 29336219 + MGP_C57BL6NJ_P0077252 Cpa5 protein_coding protein_coding MGP_C57BL6NJ_T0077253.1 MGP_C57BL6NJ_G0030978.1 mouse_genomes_project 6 29315451 29336442 + MGP_C57BL6NJ_P0077253 Cpa5 protein_coding protein_coding MGP_C57BL6NJ_T0077254.1 MGP_C57BL6NJ_G0030978.1 mouse_genomes_project 6 29315818 29336135 + MGP_C57BL6NJ_P0077254 Cpa5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103255.1 MGP_C57BL6NJ_G0041049.1 mouse_genomes_project 6 58959406 58959511 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0077724.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42219677 42261380 - MGP_C57BL6NJ_P0077724 Tcaf1 protein_coding protein_coding MGP_C57BL6NJ_T0077725.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42221617 42244379 - MGP_C57BL6NJ_P0077725 Tcaf1 protein_coding protein_coding MGP_C57BL6NJ_T0077726.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42222704 42244351 - MGP_C57BL6NJ_P0077726 Tcaf1 protein_coding protein_coding MGP_C57BL6NJ_T0077727.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42228423 42244295 - Tcaf1 protein_coding retained_intron MGP_C57BL6NJ_T0077728.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42230753 42261363 - Tcaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0077729.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42236530 42261363 - Tcaf1 protein_coding retained_intron MGP_C57BL6NJ_T0077730.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42241590 42244300 - Tcaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0077731.1 MGP_C57BL6NJ_G0031096.1 mouse_genomes_project 6 42260388 42261364 - Tcaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0002146.1 MGP_C57BL6NJ_G0002037.1 mouse_genomes_project 6 74213163 74214427 + TEC TEC MGP_C57BL6NJ_T0015873.1 MGP_C57BL6NJ_G0013918.1 mouse_genomes_project 6 85450696 85451368 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000301.1 MGP_C57BL6NJ_G0000226.1 mouse_genomes_project 6 73002928 73003528 + MGP_C57BL6NJ_P0000301 Igkv3-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0081043.1 MGP_C57BL6NJ_G0031844.1 mouse_genomes_project 6 142034420 142279385 + MGP_C57BL6NJ_P0081043 Etv6 protein_coding protein_coding MGP_C57BL6NJ_T0081044.1 MGP_C57BL6NJ_G0031844.1 mouse_genomes_project 6 142034689 142257514 + MGP_C57BL6NJ_P0081044 Etv6 protein_coding protein_coding MGP_C57BL6NJ_T0081045.1 MGP_C57BL6NJ_G0031844.1 mouse_genomes_project 6 142227945 142279389 + MGP_C57BL6NJ_P0081045 Etv6 protein_coding protein_coding MGP_C57BL6NJ_T0081046.1 MGP_C57BL6NJ_G0031844.1 mouse_genomes_project 6 142242439 142271249 + Etv6 protein_coding retained_intron MGP_C57BL6NJ_T0081047.1 MGP_C57BL6NJ_G0031844.1 mouse_genomes_project 6 142256794 142257787 + Etv6 protein_coding processed_transcript MGP_C57BL6NJ_T0016107.1 MGP_C57BL6NJ_G0014152.1 mouse_genomes_project 6 158661212 158662076 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079456.1 MGP_C57BL6NJ_G0031495.1 mouse_genomes_project 6 96221664 96231516 - MGP_C57BL6NJ_P0079456 Mrps25 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0079457.1 MGP_C57BL6NJ_G0031495.1 mouse_genomes_project 6 96222390 96223455 - Mrps25 protein_coding retained_intron MGP_C57BL6NJ_T0079458.1 MGP_C57BL6NJ_G0031495.1 mouse_genomes_project 6 96225855 96231514 - Mrps25 protein_coding retained_intron MGP_C57BL6NJ_T0016043.1 MGP_C57BL6NJ_G0014088.1 mouse_genomes_project 6 138281033 138281249 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002168.1 MGP_C57BL6NJ_G0002059.1 mouse_genomes_project 6 83089221 83091875 + TEC TEC MGP_C57BL6NJ_T0078437.1 MGP_C57BL6NJ_G0031294.1 mouse_genomes_project 6 73634205 73648650 + MGP_C57BL6NJ_P0078437 Krcc1 protein_coding protein_coding MGP_C57BL6NJ_T0078438.1 MGP_C57BL6NJ_G0031294.1 mouse_genomes_project 6 73634229 73647571 + MGP_C57BL6NJ_P0078438 Krcc1 protein_coding protein_coding MGP_C57BL6NJ_T0078439.1 MGP_C57BL6NJ_G0031294.1 mouse_genomes_project 6 73634547 73648650 + MGP_C57BL6NJ_P0078439 Krcc1 protein_coding protein_coding MGP_C57BL6NJ_T0078440.1 MGP_C57BL6NJ_G0031294.1 mouse_genomes_project 6 73645610 73648649 + MGP_C57BL6NJ_P0078440 Krcc1 protein_coding protein_coding MGP_C57BL6NJ_T0078751.1 MGP_C57BL6NJ_G0031359.1 mouse_genomes_project 6 86406150 86409553 + MGP_C57BL6NJ_P0078751 Mogs protein_coding protein_coding MGP_C57BL6NJ_T0078752.1 MGP_C57BL6NJ_G0031359.1 mouse_genomes_project 6 86407170 86408006 + Mogs protein_coding retained_intron MGP_C57BL6NJ_T0078314.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62325647 63607790 + MGP_C57BL6NJ_P0078314 Ccser1 protein_coding protein_coding MGP_C57BL6NJ_T0078315.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62325860 62475786 + Ccser1 protein_coding retained_intron MGP_C57BL6NJ_T0078316.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62325861 62475417 + Ccser1 protein_coding retained_intron MGP_C57BL6NJ_T0078317.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62473663 63605192 + MGP_C57BL6NJ_P0078317 Ccser1 protein_coding protein_coding MGP_C57BL6NJ_T0078318.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62476609 62746835 + Ccser1 protein_coding retained_intron MGP_C57BL6NJ_T0078319.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62482226 62746597 + Ccser1 protein_coding processed_transcript MGP_C57BL6NJ_T0078320.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62541308 62999528 + MGP_C57BL6NJ_P0078320 Ccser1 protein_coding protein_coding MGP_C57BL6NJ_T0078321.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62541316 62905481 + Ccser1 protein_coding retained_intron MGP_C57BL6NJ_T0078322.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62541351 62639350 + Ccser1 protein_coding processed_transcript MGP_C57BL6NJ_T0078323.1 MGP_C57BL6NJ_G0031262.1 mouse_genomes_project 6 62746498 63008392 + MGP_C57BL6NJ_P0078323 Ccser1 protein_coding protein_coding MGP_C57BL6NJ_T0002297.1 MGP_C57BL6NJ_G0002187.1 mouse_genomes_project 6 142077231 142079060 + TEC TEC MGP_C57BL6NJ_T0000415.1 MGP_C57BL6NJ_G0000334.1 mouse_genomes_project 6 70362332 70362590 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0078445.1 MGP_C57BL6NJ_G0031297.1 mouse_genomes_project 6 73758287 73814506 - MGP_C57BL6NJ_P0078445 Rmnd5a protein_coding protein_coding MGP_C57BL6NJ_T0078446.1 MGP_C57BL6NJ_G0031297.1 mouse_genomes_project 6 73760118 73765934 - Rmnd5a protein_coding processed_transcript MGP_C57BL6NJ_T0078447.1 MGP_C57BL6NJ_G0031297.1 mouse_genomes_project 6 73760985 73765839 - Rmnd5a protein_coding processed_transcript MGP_C57BL6NJ_T0078448.1 MGP_C57BL6NJ_G0031297.1 mouse_genomes_project 6 73764111 73766850 - Rmnd5a protein_coding retained_intron MGP_C57BL6NJ_T0008952.1 MGP_C57BL6NJ_G0007230.1 mouse_genomes_project 6 152505033 152562751 - 1700060C16Rik lincRNA lincRNA MGP_C57BL6NJ_T0103263.1 MGP_C57BL6NJ_G0041057.1 mouse_genomes_project 6 62187895 62188160 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078443.1 MGP_C57BL6NJ_G0031296.1 mouse_genomes_project 6 73740390 73745169 + Cd8a protein_coding retained_intron MGP_C57BL6NJ_T0078444.1 MGP_C57BL6NJ_G0031296.1 mouse_genomes_project 6 73740395 73744473 + MGP_C57BL6NJ_P0078444 Cd8a protein_coding protein_coding MGP_C57BL6NJ_T0101825.1 MGP_C57BL6NJ_G0039871.1 mouse_genomes_project 6 129913360 129913492 - Gm22833 snoRNA snoRNA MGP_C57BL6NJ_T0077019.1 MGP_C57BL6NJ_G0030939.1 mouse_genomes_project 6 23224532 23229689 - MGP_C57BL6NJ_P0077019 Tmem229a protein_coding protein_coding MGP_C57BL6NJ_T0002199.1 MGP_C57BL6NJ_G0002090.1 mouse_genomes_project 6 91268599 91271235 + TEC TEC MGP_C57BL6NJ_T0008727.1 MGP_C57BL6NJ_G0007061.1 mouse_genomes_project 6 30333668 30335419 + Gm6117 lincRNA lincRNA MGP_C57BL6NJ_T0081256.1 MGP_C57BL6NJ_G0031887.1 mouse_genomes_project 6 148079301 148088257 - MGP_C57BL6NJ_P0081256 Rergl protein_coding protein_coding MGP_C57BL6NJ_T0077311.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31589607 31695487 - MGP_C57BL6NJ_P0077311 Chchd3 protein_coding protein_coding MGP_C57BL6NJ_T0077312.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31590848 31863150 - MGP_C57BL6NJ_P0077312 Chchd3 protein_coding protein_coding MGP_C57BL6NJ_T0077313.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31590855 31863126 - MGP_C57BL6NJ_P0077313 Chchd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077314.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31591268 31701343 - Chchd3 protein_coding processed_transcript MGP_C57BL6NJ_T0077315.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31591273 31701300 - Chchd3 protein_coding processed_transcript MGP_C57BL6NJ_T0077316.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31591274 31701293 - Chchd3 protein_coding processed_transcript MGP_C57BL6NJ_T0077317.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31591285 31606416 - Chchd3 protein_coding processed_transcript MGP_C57BL6NJ_T0077318.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31591325 31623081 - Chchd3 protein_coding processed_transcript MGP_C57BL6NJ_T0077319.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31606411 31863127 - MGP_C57BL6NJ_P0077319 Chchd3 protein_coding protein_coding MGP_C57BL6NJ_T0077320.1 MGP_C57BL6NJ_G0030989.1 mouse_genomes_project 6 31655504 31863107 - MGP_C57BL6NJ_P0077320 Chchd3 protein_coding protein_coding MGP_C57BL6NJ_T0008799.1 MGP_C57BL6NJ_G0007112.1 mouse_genomes_project 6 62291835 62292523 - Gm43894 lincRNA lincRNA MGP_C57BL6NJ_T0000460.1 MGP_C57BL6NJ_G0000379.1 mouse_genomes_project 6 72725909 72726502 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011049.1 MGP_C57BL6NJ_G0009134.1 mouse_genomes_project 6 118945581 118945671 + Gm24387 miRNA miRNA MGP_C57BL6NJ_T0081092.1 MGP_C57BL6NJ_G0031853.1 mouse_genomes_project 6 143071387 143076505 + MGP_C57BL6NJ_P0081092 Apold1 protein_coding protein_coding MGP_C57BL6NJ_T0079805.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118938769 118942750 - MGP_C57BL6NJ_P0079805 Rpusd3 protein_coding protein_coding MGP_C57BL6NJ_T0079806.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118938979 118939884 - Rpusd3 protein_coding retained_intron MGP_C57BL6NJ_T0079807.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118939537 118942751 - MGP_C57BL6NJ_P0079807 Rpusd3 protein_coding protein_coding MGP_C57BL6NJ_T0079808.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118939741 118942742 - MGP_C57BL6NJ_P0079808 Rpusd3 protein_coding protein_coding MGP_C57BL6NJ_T0079809.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118940220 118942751 - Rpusd3 protein_coding retained_intron MGP_C57BL6NJ_T0079810.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118940325 118942746 - MGP_C57BL6NJ_P0079810 Rpusd3 protein_coding protein_coding MGP_C57BL6NJ_T0079811.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118940627 118942480 - Rpusd3 protein_coding retained_intron MGP_C57BL6NJ_T0079812.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118940654 118942763 - MGP_C57BL6NJ_P0079812 Rpusd3 protein_coding protein_coding MGP_C57BL6NJ_T0079813.1 MGP_C57BL6NJ_G0031561.1 mouse_genomes_project 6 118941735 118942755 - Rpusd3 protein_coding retained_intron MGP_C57BL6NJ_T0102372.1 MGP_C57BL6NJ_G0040313.1 mouse_genomes_project 6 48569992 48601379 + transcribed_unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102373.1 MGP_C57BL6NJ_G0040313.1 mouse_genomes_project 6 48573732 48596987 + transcribed_unitary_pseudogene transcribed_unitary_pseudogene MGP_C57BL6NJ_T0102374.1 MGP_C57BL6NJ_G0040313.1 mouse_genomes_project 6 48577850 48599051 + transcribed_unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102375.1 MGP_C57BL6NJ_G0040313.1 mouse_genomes_project 6 48577907 48595061 + transcribed_unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0005267.1 MGP_C57BL6NJ_G0004489.1 mouse_genomes_project 6 143323656 143330137 + Gm19434 antisense antisense MGP_C57BL6NJ_T0079476.1 MGP_C57BL6NJ_G0031501.1 mouse_genomes_project 6 96963293 96978343 + MGP_C57BL6NJ_P0079476 Gm15737 protein_coding protein_coding MGP_C57BL6NJ_T0102524.1 MGP_C57BL6NJ_G0040378.1 mouse_genomes_project 6 128321137 128338895 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102525.1 MGP_C57BL6NJ_G0040378.1 mouse_genomes_project 6 128321241 128340751 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0008683.1 MGP_C57BL6NJ_G0007032.1 mouse_genomes_project 6 3968568 3972714 - Gm26774 lincRNA lincRNA MGP_C57BL6NJ_T0079331.1 MGP_C57BL6NJ_G0031471.1 mouse_genomes_project 6 94218670 94219609 + MGP_C57BL6NJ_P0079331 Vmn1r54 protein_coding protein_coding MGP_C57BL6NJ_T0077303.1 MGP_C57BL6NJ_G0030986.1 mouse_genomes_project 6 30271036 30322732 - MGP_C57BL6NJ_P0077303 Podxl protein_coding protein_coding MGP_C57BL6NJ_T0077304.1 MGP_C57BL6NJ_G0030986.1 mouse_genomes_project 6 30274540 30275860 - Podxl protein_coding processed_transcript MGP_C57BL6NJ_T0011905.1 MGP_C57BL6NJ_G0009990.1 mouse_genomes_project 6 52534989 52535091 + Gm27868 misc_RNA misc_RNA MGP_C57BL6NJ_T0011930.1 MGP_C57BL6NJ_G0010015.1 mouse_genomes_project 6 117455564 117455879 + Gm25454 misc_RNA misc_RNA MGP_C57BL6NJ_T0077074.1 MGP_C57BL6NJ_G0030950.1 mouse_genomes_project 6 27615812 27629766 + MGP_C57BL6NJ_P0077074 Lep protein_coding protein_coding MGP_C57BL6NJ_T0077075.1 MGP_C57BL6NJ_G0030950.1 mouse_genomes_project 6 27621054 27626861 + MGP_C57BL6NJ_P0077075 Lep protein_coding protein_coding MGP_C57BL6NJ_T0016014.1 MGP_C57BL6NJ_G0014059.1 mouse_genomes_project 6 134134310 134135534 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078232.1 MGP_C57BL6NJ_G0031228.1 mouse_genomes_project 6 57927010 57927945 + MGP_C57BL6NJ_P0078232 Vmn1r12 protein_coding protein_coding MGP_C57BL6NJ_T0080430.1 MGP_C57BL6NJ_G0031678.1 mouse_genomes_project 6 129573886 129596372 + MGP_C57BL6NJ_P0080430 Clec4a2 protein_coding protein_coding MGP_C57BL6NJ_T0080431.1 MGP_C57BL6NJ_G0031678.1 mouse_genomes_project 6 129595390 129600678 + MGP_C57BL6NJ_P0080431 Clec4a2 protein_coding protein_coding MGP_C57BL6NJ_T0080432.1 MGP_C57BL6NJ_G0031678.1 mouse_genomes_project 6 129595392 129607963 + MGP_C57BL6NJ_P0080432 Clec4a2 protein_coding protein_coding MGP_C57BL6NJ_T0080433.1 MGP_C57BL6NJ_G0031678.1 mouse_genomes_project 6 129596018 129609412 + MGP_C57BL6NJ_P0080433 Clec4a2 protein_coding protein_coding MGP_C57BL6NJ_T0080434.1 MGP_C57BL6NJ_G0031678.1 mouse_genomes_project 6 129596169 129608305 + MGP_C57BL6NJ_P0080434 Clec4a2 protein_coding protein_coding MGP_C57BL6NJ_T0079840.1 MGP_C57BL6NJ_G0031567.1 mouse_genomes_project 6 119019336 119027577 - MGP_C57BL6NJ_P0079840 Prrt3 protein_coding protein_coding MGP_C57BL6NJ_T0079841.1 MGP_C57BL6NJ_G0031567.1 mouse_genomes_project 6 119019622 119027625 - MGP_C57BL6NJ_P0079841 Prrt3 protein_coding protein_coding MGP_C57BL6NJ_T0079842.1 MGP_C57BL6NJ_G0031567.1 mouse_genomes_project 6 119019792 119027512 - MGP_C57BL6NJ_P0079842 Prrt3 protein_coding protein_coding MGP_C57BL6NJ_T0079843.1 MGP_C57BL6NJ_G0031567.1 mouse_genomes_project 6 119021965 119027581 - MGP_C57BL6NJ_P0079843 Prrt3 protein_coding protein_coding MGP_C57BL6NJ_T0079844.1 MGP_C57BL6NJ_G0031567.1 mouse_genomes_project 6 119021997 119027587 - MGP_C57BL6NJ_P0079844 Prrt3 protein_coding protein_coding MGP_C57BL6NJ_T0100521.1 MGP_C57BL6NJ_G0038567.1 mouse_genomes_project 6 42381905 42382011 + Gm23982 snRNA snRNA MGP_C57BL6NJ_T0008822.1 MGP_C57BL6NJ_G0007134.1 mouse_genomes_project 6 85203407 85204403 - Gm44202 lincRNA lincRNA MGP_C57BL6NJ_T0015748.1 MGP_C57BL6NJ_G0013793.1 mouse_genomes_project 6 49106904 49109334 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079478.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97816480 98451757 - MGP_C57BL6NJ_P0079478 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079479.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97816480 98452352 - MGP_C57BL6NJ_P0079479 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079480.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97816480 98451757 - MGP_C57BL6NJ_P0079480 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079481.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97819056 98062835 - MGP_C57BL6NJ_P0079481 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079482.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97823087 98062206 - MGP_C57BL6NJ_P0079482 Magi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079483.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97823922 98131677 - MGP_C57BL6NJ_P0079483 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079484.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97824031 98452330 - MGP_C57BL6NJ_P0079484 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079485.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97918540 98061757 - MGP_C57BL6NJ_P0079485 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079486.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 97930119 97937358 - MGP_C57BL6NJ_P0079486 Magi1 protein_coding protein_coding MGP_C57BL6NJ_T0079487.1 MGP_C57BL6NJ_G0031502.1 mouse_genomes_project 6 98288559 98451460 - Magi1 protein_coding processed_transcript MGP_C57BL6NJ_T0078819.1 MGP_C57BL6NJ_G0031370.1 mouse_genomes_project 6 86687568 86784797 - MGP_C57BL6NJ_P0078819 Tet3 protein_coding protein_coding MGP_C57BL6NJ_T0078820.1 MGP_C57BL6NJ_G0031370.1 mouse_genomes_project 6 86687568 86788092 - MGP_C57BL6NJ_P0078820 Tet3 protein_coding protein_coding MGP_C57BL6NJ_T0078821.1 MGP_C57BL6NJ_G0031370.1 mouse_genomes_project 6 86727410 86771426 - Tet3 protein_coding processed_transcript MGP_C57BL6NJ_T0078822.1 MGP_C57BL6NJ_G0031370.1 mouse_genomes_project 6 86733321 86790784 - MGP_C57BL6NJ_P0078822 Tet3 protein_coding protein_coding MGP_C57BL6NJ_T0078823.1 MGP_C57BL6NJ_G0031370.1 mouse_genomes_project 6 86766544 86771380 - Tet3 protein_coding retained_intron MGP_C57BL6NJ_T0000410.1 MGP_C57BL6NJ_G0000329.1 mouse_genomes_project 6 70120454 70124181 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000271.1 MGP_C57BL6NJ_G0000202.1 mouse_genomes_project 6 72157761 72158328 - MGP_C57BL6NJ_P0000271 Igkv8-34 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0103294.1 MGP_C57BL6NJ_G0041087.1 mouse_genomes_project 6 137912679 137928031 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0078352.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 66970279 67080903 + MGP_C57BL6NJ_P0078352 Tnip3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0078353.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67036045 67083835 + MGP_C57BL6NJ_P0078353 Tnip3 protein_coding protein_coding MGP_C57BL6NJ_T0078354.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67036063 67045822 + Tnip3 protein_coding retained_intron MGP_C57BL6NJ_T0078355.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67036075 67037309 + Tnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0078356.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67036106 67039348 + Tnip3 protein_coding retained_intron MGP_C57BL6NJ_T0078357.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67036134 67040761 + Tnip3 protein_coding retained_intron MGP_C57BL6NJ_T0078358.1 MGP_C57BL6NJ_G0031268.1 mouse_genomes_project 6 67043221 67045845 + Tnip3 protein_coding retained_intron MGP_C57BL6NJ_T0081020.1 MGP_C57BL6NJ_G0031825.1 mouse_genomes_project 6 140500469 140501399 - MGP_C57BL6NJ_P0081020 Tas2r122 protein_coding protein_coding MGP_C57BL6NJ_T0005065.1 MGP_C57BL6NJ_G0004346.1 mouse_genomes_project 6 5499660 5537407 - Gm16043 antisense antisense MGP_C57BL6NJ_T0015762.1 MGP_C57BL6NJ_G0013807.1 mouse_genomes_project 6 52487809 52488459 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080470.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131002651 131052372 - MGP_C57BL6NJ_P0080470 Clstn3 protein_coding protein_coding MGP_C57BL6NJ_T0080471.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131003204 131005404 - Clstn3 protein_coding processed_transcript MGP_C57BL6NJ_T0080472.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131008672 131010780 - Clstn3 protein_coding retained_intron MGP_C57BL6NJ_T0080473.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131010804 131032609 - Clstn3 protein_coding retained_intron MGP_C57BL6NJ_T0080474.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131042323 131045773 - Clstn3 protein_coding processed_transcript MGP_C57BL6NJ_T0080475.1 MGP_C57BL6NJ_G0031690.1 mouse_genomes_project 6 131049497 131051989 - MGP_C57BL6NJ_P0080475 Clstn3 protein_coding protein_coding MGP_C57BL6NJ_T0002295.1 MGP_C57BL6NJ_G0002185.1 mouse_genomes_project 6 140674575 140674886 + TEC TEC MGP_C57BL6NJ_T0002324.1 MGP_C57BL6NJ_G0002214.1 mouse_genomes_project 6 155923145 155924073 - TEC TEC MGP_C57BL6NJ_T0078656.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058175 83923636 + MGP_C57BL6NJ_P0078656 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078657.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058186 83061459 + MGP_C57BL6NJ_P0078657 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078658.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058216 83064627 + MGP_C57BL6NJ_P0078658 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078659.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058216 83922816 + MGP_C57BL6NJ_P0078659 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078660.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058309 83923634 + MGP_C57BL6NJ_P0078660 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078661.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83058346 83065612 + MGP_C57BL6NJ_P0078661 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0078662.1 MGP_C57BL6NJ_G0031339.1 mouse_genomes_project 6 83059058 83064635 + MGP_C57BL6NJ_P0078662 Lrrtm4 protein_coding protein_coding MGP_C57BL6NJ_T0000216.1 MGP_C57BL6NJ_G0000160.1 mouse_genomes_project 6 70068794 70069275 + MGP_C57BL6NJ_P0000216 Igkv14-111 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002303.1 MGP_C57BL6NJ_G0002193.1 mouse_genomes_project 6 145142682 145143217 + TEC TEC MGP_C57BL6NJ_T0015621.1 MGP_C57BL6NJ_G0013666.1 mouse_genomes_project 6 5741 8349 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100551.1 MGP_C57BL6NJ_G0038597.1 mouse_genomes_project 6 129664585 129664667 - Gm22946 snRNA snRNA MGP_C57BL6NJ_T0015771.1 MGP_C57BL6NJ_G0013816.1 mouse_genomes_project 6 58794213 58794502 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080761.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133803558 133820048 - MGP_C57BL6NJ_P0080761 Rad51ap1 protein_coding protein_coding MGP_C57BL6NJ_T0080762.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133803923 133806338 - Rad51ap1 protein_coding retained_intron MGP_C57BL6NJ_T0080763.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133803923 133820048 - MGP_C57BL6NJ_P0080763 Rad51ap1 protein_coding protein_coding MGP_C57BL6NJ_T0080764.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133804686 133806244 - Rad51ap1 protein_coding processed_transcript MGP_C57BL6NJ_T0080765.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133805497 133808779 - Rad51ap1 protein_coding retained_intron MGP_C57BL6NJ_T0080766.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133806870 133820032 - MGP_C57BL6NJ_P0080766 Rad51ap1 protein_coding protein_coding MGP_C57BL6NJ_T0080767.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133806886 133808617 - Rad51ap1 protein_coding retained_intron MGP_C57BL6NJ_T0080768.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133808153 133820007 - Rad51ap1 protein_coding processed_transcript MGP_C57BL6NJ_T0080769.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133808615 133820036 - MGP_C57BL6NJ_P0080769 Rad51ap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080770.1 MGP_C57BL6NJ_G0031743.1 mouse_genomes_project 6 133809186 133820048 - Rad51ap1 protein_coding retained_intron MGP_C57BL6NJ_T0076636.1 MGP_C57BL6NJ_G0030860.1 mouse_genomes_project 6 723876 729296 - MGP_C57BL6NJ_P0076636 Tfpi2 protein_coding protein_coding MGP_C57BL6NJ_T0076637.1 MGP_C57BL6NJ_G0030860.1 mouse_genomes_project 6 726024 751234 - MGP_C57BL6NJ_P0076637 Tfpi2 protein_coding protein_coding MGP_C57BL6NJ_T0077686.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820612 41848584 + MGP_C57BL6NJ_P0077686 Clcn1 protein_coding protein_coding MGP_C57BL6NJ_T0077687.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820694 41848106 + MGP_C57BL6NJ_P0077687 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077688.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820783 41848157 + MGP_C57BL6NJ_P0077688 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077689.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820783 41848106 + MGP_C57BL6NJ_P0077689 Clcn1 protein_coding protein_coding MGP_C57BL6NJ_T0077690.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820783 41848106 + MGP_C57BL6NJ_P0077690 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077691.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820783 41848106 + MGP_C57BL6NJ_P0077691 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077692.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41820793 41847885 + MGP_C57BL6NJ_P0077692 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077693.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41832827 41849684 + Clcn1 protein_coding processed_transcript MGP_C57BL6NJ_T0077694.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41844072 41846992 + MGP_C57BL6NJ_P0077694 Clcn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077695.1 MGP_C57BL6NJ_G0031083.1 mouse_genomes_project 6 41846419 41847272 + Clcn1 protein_coding retained_intron MGP_C57BL6NJ_T0015714.1 MGP_C57BL6NJ_G0013759.1 mouse_genomes_project 6 39207330 39207904 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0078998.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89563750 89584091 - MGP_C57BL6NJ_P0078998 Dusp11 protein_coding protein_coding MGP_C57BL6NJ_T0078999.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89569225 89581760 - MGP_C57BL6NJ_P0078999 Dusp11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079000.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89572180 89573354 - Dusp11 protein_coding retained_intron MGP_C57BL6NJ_T0079001.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89572185 89576413 - Dusp11 protein_coding processed_transcript MGP_C57BL6NJ_T0079002.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89572508 89576297 - Dusp11 protein_coding retained_intron MGP_C57BL6NJ_T0079003.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89577432 89584091 - Dusp11 protein_coding processed_transcript MGP_C57BL6NJ_T0079004.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89577534 89584031 - Dusp11 protein_coding processed_transcript MGP_C57BL6NJ_T0079005.1 MGP_C57BL6NJ_G0031404.1 mouse_genomes_project 6 89582746 89584066 - Dusp11 protein_coding retained_intron MGP_C57BL6NJ_T0098884.1 MGP_C57BL6NJ_G0036948.1 mouse_genomes_project 6 47461431 47461976 - pseudogene pseudogene MGP_C57BL6NJ_T0077460.1 MGP_C57BL6NJ_G0031016.1 mouse_genomes_project 6 37168772 37232941 - MGP_C57BL6NJ_P0077460 Svopl protein_coding protein_coding MGP_C57BL6NJ_T0077461.1 MGP_C57BL6NJ_G0031016.1 mouse_genomes_project 6 37169545 37217004 - MGP_C57BL6NJ_P0077461 Svopl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0077462.1 MGP_C57BL6NJ_G0031016.1 mouse_genomes_project 6 37200969 37209378 - Svopl protein_coding retained_intron MGP_C57BL6NJ_T0077463.1 MGP_C57BL6NJ_G0031016.1 mouse_genomes_project 6 37201271 37204763 - Svopl protein_coding retained_intron MGP_C57BL6NJ_T0077464.1 MGP_C57BL6NJ_G0031016.1 mouse_genomes_project 6 37201424 37232941 - Svopl protein_coding retained_intron MGP_C57BL6NJ_T0080276.1 MGP_C57BL6NJ_G0031644.1 mouse_genomes_project 6 126552036 126583392 - MGP_C57BL6NJ_P0080276 Cecr5 protein_coding protein_coding MGP_C57BL6NJ_T0080277.1 MGP_C57BL6NJ_G0031644.1 mouse_genomes_project 6 126566275 126583377 - Cecr5 protein_coding retained_intron MGP_C57BL6NJ_T0080278.1 MGP_C57BL6NJ_G0031644.1 mouse_genomes_project 6 126567106 126583363 - Cecr5 protein_coding retained_intron MGP_C57BL6NJ_T0080279.1 MGP_C57BL6NJ_G0031644.1 mouse_genomes_project 6 126582019 126583375 - Cecr5 protein_coding retained_intron MGP_C57BL6NJ_T0077774.1 MGP_C57BL6NJ_G0031117.1 mouse_genomes_project 6 47057334 47058887 + MGP_C57BL6NJ_P0077774 Gm17611 protein_coding protein_coding MGP_C57BL6NJ_T0015937.1 MGP_C57BL6NJ_G0013982.1 mouse_genomes_project 6 112459383 112459609 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0015692.1 MGP_C57BL6NJ_G0013737.1 mouse_genomes_project 6 25231527 25232269 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0080574.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131531445 131548703 - MGP_C57BL6NJ_P0080574 P3h3 protein_coding protein_coding MGP_C57BL6NJ_T0080575.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131531562 131548680 - MGP_C57BL6NJ_P0080575 P3h3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080576.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131531850 131532968 - P3h3 protein_coding retained_intron MGP_C57BL6NJ_T0080577.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131535681 131541693 - P3h3 protein_coding retained_intron MGP_C57BL6NJ_T0080578.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131536329 131545672 - P3h3 protein_coding retained_intron MGP_C57BL6NJ_T0080579.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131536371 131545575 - P3h3 protein_coding retained_intron MGP_C57BL6NJ_T0080580.1 MGP_C57BL6NJ_G0031707.1 mouse_genomes_project 6 131545143 131545918 - P3h3 protein_coding retained_intron MGP_C57BL6NJ_T0081010.1 MGP_C57BL6NJ_G0031818.1 mouse_genomes_project 6 140184745 140197278 - MGP_C57BL6NJ_P0081010 Prb1 protein_coding protein_coding MGP_C57BL6NJ_T0008840.1 MGP_C57BL6NJ_G0007146.1 mouse_genomes_project 6 91335044 91336485 + Gm44201 lincRNA lincRNA MGP_C57BL6NJ_T0077962.1 MGP_C57BL6NJ_G0031161.1 mouse_genomes_project 6 49553491 49646654 + MGP_C57BL6NJ_P0077962 Stk31 protein_coding protein_coding MGP_C57BL6NJ_T0077963.1 MGP_C57BL6NJ_G0031161.1 mouse_genomes_project 6 49553522 49646505 + MGP_C57BL6NJ_P0077963 Stk31 protein_coding protein_coding MGP_C57BL6NJ_T0077964.1 MGP_C57BL6NJ_G0031161.1 mouse_genomes_project 6 49553522 49646505 + MGP_C57BL6NJ_P0077964 Stk31 protein_coding protein_coding MGP_C57BL6NJ_T0077965.1 MGP_C57BL6NJ_G0031161.1 mouse_genomes_project 6 49609509 49646653 + MGP_C57BL6NJ_P0077965 Stk31 protein_coding protein_coding MGP_C57BL6NJ_T0078415.1 MGP_C57BL6NJ_G0031286.1 mouse_genomes_project 6 69147602 69149337 - MGP_C57BL6NJ_P0078415 Tacstd2 protein_coding protein_coding MGP_C57BL6NJ_T0078276.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59514474 59613300 + MGP_C57BL6NJ_P0078276 Abcg2 protein_coding protein_coding MGP_C57BL6NJ_T0078277.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558076 59582625 + Abcg2 protein_coding retained_intron MGP_C57BL6NJ_T0078278.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558090 59583086 + MGP_C57BL6NJ_P0078278 Abcg2 protein_coding protein_coding MGP_C57BL6NJ_T0078279.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558090 59610475 + MGP_C57BL6NJ_P0078279 Abcg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078280.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558094 59608150 + MGP_C57BL6NJ_P0078280 Abcg2 protein_coding protein_coding MGP_C57BL6NJ_T0078281.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558094 59610117 + MGP_C57BL6NJ_P0078281 Abcg2 protein_coding protein_coding MGP_C57BL6NJ_T0078282.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59558112 59583086 + MGP_C57BL6NJ_P0078282 Abcg2 protein_coding protein_coding MGP_C57BL6NJ_T0078283.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59581250 59582588 + Abcg2 protein_coding retained_intron MGP_C57BL6NJ_T0078284.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59592234 59609981 + MGP_C57BL6NJ_P0078284 Abcg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078285.1 MGP_C57BL6NJ_G0031254.1 mouse_genomes_project 6 59595251 59602218 + Abcg2 protein_coding retained_intron MGP_C57BL6NJ_T0079151.1 MGP_C57BL6NJ_G0031435.1 mouse_genomes_project 6 91544983 91595022 - MGP_C57BL6NJ_P0079151 Gm45140 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0079155.1 MGP_C57BL6NJ_G0031435.1 mouse_genomes_project 6 91548568 91580592 - MGP_C57BL6NJ_P0079155 Gm45140 protein_coding protein_coding MGP_C57BL6NJ_T0002815.1 MGP_C57BL6NJ_G0002679.1 mouse_genomes_project 6 40579174 40579692 + MGP_C57BL6NJ_P0002815 Trbv12-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0081036.1 MGP_C57BL6NJ_G0031841.1 mouse_genomes_project 6 140956703 140959627 + MGP_C57BL6NJ_P0081036 Smim10l1 protein_coding protein_coding MGP_C57BL6NJ_T0081037.1 MGP_C57BL6NJ_G0031841.1 mouse_genomes_project 6 140957050 140962774 + MGP_C57BL6NJ_P0081037 Smim10l1 protein_coding protein_coding MGP_C57BL6NJ_T0081038.1 MGP_C57BL6NJ_G0031841.1 mouse_genomes_project 6 140957084 140962776 + MGP_C57BL6NJ_P0081038 Smim10l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081039.1 MGP_C57BL6NJ_G0031841.1 mouse_genomes_project 6 140957131 140959306 + MGP_C57BL6NJ_P0081039 Smim10l1 protein_coding protein_coding MGP_C57BL6NJ_T0018773.1 MGP_C57BL6NJ_G0016040.1 mouse_genomes_project 6 131996050 132019070 + processed_transcript antisense MGP_C57BL6NJ_T0018774.1 MGP_C57BL6NJ_G0016040.1 mouse_genomes_project 6 131996099 131997103 + processed_transcript retained_intron MGP_C57BL6NJ_T0018775.1 MGP_C57BL6NJ_G0016040.1 mouse_genomes_project 6 131996119 132002556 + processed_transcript antisense MGP_C57BL6NJ_T0018776.1 MGP_C57BL6NJ_G0016040.1 mouse_genomes_project 6 131996193 132005531 + processed_transcript antisense MGP_C57BL6NJ_T0002289.1 MGP_C57BL6NJ_G0002179.1 mouse_genomes_project 6 135397624 135398091 + TEC TEC MGP_C57BL6NJ_T0000294.1 MGP_C57BL6NJ_G0000219.1 mouse_genomes_project 6 72817942 72818531 + MGP_C57BL6NJ_P0000294 Igkv3-9 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077742.1 MGP_C57BL6NJ_G0031104.1 mouse_genomes_project 6 42477321 42478248 + MGP_C57BL6NJ_P0077742 Olfr446 protein_coding protein_coding MGP_C57BL6NJ_T0005247.1 MGP_C57BL6NJ_G0004472.1 mouse_genomes_project 6 133568908 133591871 + Gm26673 antisense antisense MGP_C57BL6NJ_T0078266.1 MGP_C57BL6NJ_G0031247.1 mouse_genomes_project 6 58800163 58801109 - MGP_C57BL6NJ_P0078266 Vmn1r24 protein_coding protein_coding MGP_C57BL6NJ_T0000206.1 MGP_C57BL6NJ_G0000153.1 mouse_genomes_project 6 69621029 69621500 + MGP_C57BL6NJ_P0000206 Igkv14-126 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011902.1 MGP_C57BL6NJ_G0009987.1 mouse_genomes_project 6 47713180 47713292 - Rny1 misc_RNA misc_RNA MGP_C57BL6NJ_T0002286.1 MGP_C57BL6NJ_G0002176.1 mouse_genomes_project 6 134775699 134779482 - TEC TEC MGP_C57BL6NJ_T0078844.1 MGP_C57BL6NJ_G0031374.1 mouse_genomes_project 6 87006175 87018697 - MGP_C57BL6NJ_P0078844 Clec4f protein_coding protein_coding MGP_C57BL6NJ_T0078845.1 MGP_C57BL6NJ_G0031374.1 mouse_genomes_project 6 87006850 87018631 - Clec4f protein_coding processed_transcript MGP_C57BL6NJ_T0015729.1 MGP_C57BL6NJ_G0013774.1 mouse_genomes_project 6 43536076 43537334 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008896.1 MGP_C57BL6NJ_G0007189.1 mouse_genomes_project 6 123430945 123487088 - lincRNA lincRNA MGP_C57BL6NJ_T0100515.1 MGP_C57BL6NJ_G0038561.1 mouse_genomes_project 6 31900699 31900803 - Gm22321 snRNA snRNA MGP_C57BL6NJ_T0016060.1 MGP_C57BL6NJ_G0014105.1 mouse_genomes_project 6 140124436 140124887 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000455.1 MGP_C57BL6NJ_G0000374.1 mouse_genomes_project 6 72043235 72043517 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0081521.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155871680 155881208 + Arntl2 protein_coding processed_transcript MGP_C57BL6NJ_T0081522.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155871690 155908452 + MGP_C57BL6NJ_P0081522 Arntl2 protein_coding protein_coding MGP_C57BL6NJ_T0081523.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155881159 155907569 + MGP_C57BL6NJ_P0081523 Arntl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081524.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155881159 155907569 + MGP_C57BL6NJ_P0081524 Arntl2 protein_coding protein_coding MGP_C57BL6NJ_T0081525.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155881159 155907569 + MGP_C57BL6NJ_P0081525 Arntl2 protein_coding protein_coding MGP_C57BL6NJ_T0081526.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155881159 155907569 + MGP_C57BL6NJ_P0081526 Arntl2 protein_coding protein_coding MGP_C57BL6NJ_T0081527.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155895458 155898182 + Arntl2 protein_coding retained_intron MGP_C57BL6NJ_T0081528.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155897640 155898933 + Arntl2 protein_coding retained_intron MGP_C57BL6NJ_T0081529.1 MGP_C57BL6NJ_G0031935.1 mouse_genomes_project 6 155905446 155908445 + Arntl2 protein_coding retained_intron MGP_C57BL6NJ_T0080033.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906021 121976008 + MGP_C57BL6NJ_P0080033 Fam21 protein_coding protein_coding MGP_C57BL6NJ_T0080034.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906029 121968393 + MGP_C57BL6NJ_P0080034 Fam21 protein_coding protein_coding MGP_C57BL6NJ_T0080035.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906039 121920213 + MGP_C57BL6NJ_P0080035 Fam21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080036.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906078 121907306 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0080037.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906105 121913636 + MGP_C57BL6NJ_P0080037 Fam21 protein_coding protein_coding MGP_C57BL6NJ_T0080038.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906120 121915813 + MGP_C57BL6NJ_P0080038 Fam21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080039.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906189 121975987 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0080040.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121906499 121972304 + MGP_C57BL6NJ_P0080040 Fam21 protein_coding protein_coding MGP_C57BL6NJ_T0080041.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121920217 121926020 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0080042.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121921542 121929825 + MGP_C57BL6NJ_P0080042 Fam21 protein_coding protein_coding MGP_C57BL6NJ_T0080043.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121928377 121932208 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0080044.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121969126 121970149 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0080045.1 MGP_C57BL6NJ_G0031602.1 mouse_genomes_project 6 121969876 121972289 + Fam21 protein_coding retained_intron MGP_C57BL6NJ_T0078799.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86620682 86632527 - MGP_C57BL6NJ_P0078799 Mthfd2 protein_coding protein_coding MGP_C57BL6NJ_T0078800.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86621393 86632474 - MGP_C57BL6NJ_P0078800 Mthfd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0078801.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86621549 86624228 - Mthfd2 protein_coding retained_intron MGP_C57BL6NJ_T0078802.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86624254 86625469 - Mthfd2 protein_coding retained_intron MGP_C57BL6NJ_T0078803.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86624472 86626514 - Mthfd2 protein_coding retained_intron MGP_C57BL6NJ_T0078804.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86626265 86627326 - Mthfd2 protein_coding retained_intron MGP_C57BL6NJ_T0078805.1 MGP_C57BL6NJ_G0031367.1 mouse_genomes_project 6 86626791 86640860 - MGP_C57BL6NJ_P0078805 Mthfd2 protein_coding protein_coding MGP_C57BL6NJ_T0008718.1 MGP_C57BL6NJ_G0007057.1 mouse_genomes_project 6 29826317 29829598 + lincRNA lincRNA MGP_C57BL6NJ_T0080139.1 MGP_C57BL6NJ_G0031625.1 mouse_genomes_project 6 124330958 124357904 - MGP_C57BL6NJ_P0080139 Zfp9 protein_coding protein_coding MGP_C57BL6NJ_T0080140.1 MGP_C57BL6NJ_G0031625.1 mouse_genomes_project 6 124340757 124344373 - Zfp9 protein_coding retained_intron MGP_C57BL6NJ_T0011032.1 MGP_C57BL6NJ_G0009117.1 mouse_genomes_project 6 86332761 86332824 + Mir7040 miRNA miRNA MGP_C57BL6NJ_T0005186.1 MGP_C57BL6NJ_G0004427.1 mouse_genomes_project 6 92003456 92006533 - 1700031F10Rik antisense antisense MGP_C57BL6NJ_T0005187.1 MGP_C57BL6NJ_G0004427.1 mouse_genomes_project 6 92003458 92004494 - 1700031F10Rik antisense antisense MGP_C57BL6NJ_T0078172.1 MGP_C57BL6NJ_G0031209.1 mouse_genomes_project 6 56005058 56011624 + Ghrhr protein_coding retained_intron MGP_C57BL6NJ_T0078173.1 MGP_C57BL6NJ_G0031209.1 mouse_genomes_project 6 56005106 56018778 + MGP_C57BL6NJ_P0078173 Ghrhr protein_coding protein_coding MGP_C57BL6NJ_T0078174.1 MGP_C57BL6NJ_G0031209.1 mouse_genomes_project 6 56005128 56018567 + MGP_C57BL6NJ_P0078174 Ghrhr protein_coding protein_coding MGP_C57BL6NJ_T0016015.1 MGP_C57BL6NJ_G0014060.1 mouse_genomes_project 6 134187477 134187924 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002873.1 MGP_C57BL6NJ_G0002727.1 mouse_genomes_project 6 40546929 40547331 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0103247.1 MGP_C57BL6NJ_G0041041.1 mouse_genomes_project 6 57961365 57962203 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011061.1 MGP_C57BL6NJ_G0009146.1 mouse_genomes_project 6 129278000 129278061 + Mir7231 miRNA miRNA MGP_C57BL6NJ_T0002333.1 MGP_C57BL6NJ_G0002223.1 mouse_genomes_project 6 158829361 158832614 + TEC TEC MGP_C57BL6NJ_T0002269.1 MGP_C57BL6NJ_G0002160.1 mouse_genomes_project 6 123500763 123501105 + TEC TEC MGP_C57BL6NJ_T0010995.1 MGP_C57BL6NJ_G0009080.1 mouse_genomes_project 6 464574 464659 - Mir653 miRNA miRNA MGP_C57BL6NJ_T0002176.1 MGP_C57BL6NJ_G0002067.1 mouse_genomes_project 6 85093165 85094701 - TEC TEC MGP_C57BL6NJ_T0000231.1 MGP_C57BL6NJ_G0000172.1 mouse_genomes_project 6 70666154 70666638 - MGP_C57BL6NJ_P0000231 Igkv19-93 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000232.1 MGP_C57BL6NJ_G0000172.1 mouse_genomes_project 6 70666154 70666622 - MGP_C57BL6NJ_P0000232 Igkv19-93 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011003.1 MGP_C57BL6NJ_G0009088.1 mouse_genomes_project 6 27974518 27974607 + Gm26220 miRNA miRNA MGP_C57BL6NJ_T0005102.1 MGP_C57BL6NJ_G0004374.1 mouse_genomes_project 6 39604651 39610595 - Gm26807 antisense antisense MGP_C57BL6NJ_T0100533.1 MGP_C57BL6NJ_G0038579.1 mouse_genomes_project 6 87092386 87092483 + Gm25054 snRNA snRNA MGP_C57BL6NJ_T0005164.1 MGP_C57BL6NJ_G0004415.1 mouse_genomes_project 6 87512078 87524940 - Gm15475 antisense antisense MGP_C57BL6NJ_T0015847.1 MGP_C57BL6NJ_G0013892.1 mouse_genomes_project 6 72685111 72686452 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000274.1 MGP_C57BL6NJ_G0000204.1 mouse_genomes_project 6 72183467 72184047 - MGP_C57BL6NJ_P0000274 Igkv6-32 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0077776.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47461053 47509651 + MGP_C57BL6NJ_P0077776 Cul1 protein_coding protein_coding MGP_C57BL6NJ_T0077777.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47461147 47490161 + MGP_C57BL6NJ_P0077777 Cul1 protein_coding protein_coding MGP_C57BL6NJ_T0077778.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47461559 47536106 + MGP_C57BL6NJ_P0077778 Cul1 protein_coding protein_coding MGP_C57BL6NJ_T0077779.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47461975 47538479 + MGP_C57BL6NJ_P0077779 Cul1 protein_coding protein_coding MGP_C57BL6NJ_T0077780.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47462043 47490373 + MGP_C57BL6NJ_P0077780 Cul1 protein_coding protein_coding MGP_C57BL6NJ_T0077781.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47527156 47538398 + Cul1 protein_coding processed_transcript MGP_C57BL6NJ_T0077782.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47529339 47532127 + Cul1 protein_coding retained_intron MGP_C57BL6NJ_T0077783.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47532043 47535621 + Cul1 protein_coding retained_intron MGP_C57BL6NJ_T0077784.1 MGP_C57BL6NJ_G0031118.1 mouse_genomes_project 6 47535903 47538119 + Cul1 protein_coding processed_transcript MGP_C57BL6NJ_T0008756.1 MGP_C57BL6NJ_G0007078.1 mouse_genomes_project 6 38523410 38525838 + Gm43479 lincRNA lincRNA MGP_C57BL6NJ_T0002220.1 MGP_C57BL6NJ_G0002111.1 mouse_genomes_project 6 95430633 95431834 + TEC TEC MGP_C57BL6NJ_T0080272.1 MGP_C57BL6NJ_G0031642.1 mouse_genomes_project 6 126505234 126525723 + Il17ra protein_coding retained_intron MGP_C57BL6NJ_T0080273.1 MGP_C57BL6NJ_G0031642.1 mouse_genomes_project 6 126505234 126529320 + MGP_C57BL6NJ_P0080273 Il17ra protein_coding protein_coding MGP_C57BL6NJ_T0080274.1 MGP_C57BL6NJ_G0031642.1 mouse_genomes_project 6 126515596 126522032 + Il17ra protein_coding processed_transcript MGP_C57BL6NJ_T0002058.1 MGP_C57BL6NJ_G0001949.1 mouse_genomes_project 6 3871977 3873331 - TEC TEC MGP_C57BL6NJ_T0000198.1 MGP_C57BL6NJ_G0000147.1 mouse_genomes_project 6 69244826 69245622 + MGP_C57BL6NJ_P0000198 Igkv1-135 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0002713.1 MGP_C57BL6NJ_G0002591.1 mouse_genomes_project 6 41065009 41065058 + MGP_C57BL6NJ_P0002713 Trbj2-4 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0000433.1 MGP_C57BL6NJ_G0000352.1 mouse_genomes_project 6 71140593 71141019 + IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0005278.1 MGP_C57BL6NJ_G0004498.1 mouse_genomes_project 6 152086593 152106681 - 1700126G02Rik antisense antisense MGP_C57BL6NJ_T0080780.1 MGP_C57BL6NJ_G0031747.1 mouse_genomes_project 6 133973315 133998566 - MGP_C57BL6NJ_P0080780 Tigar protein_coding protein_coding MGP_C57BL6NJ_T0080781.1 MGP_C57BL6NJ_G0031747.1 mouse_genomes_project 6 133976081 133998573 - MGP_C57BL6NJ_P0080781 Tigar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005124.1 MGP_C57BL6NJ_G0004388.1 mouse_genomes_project 6 54329989 54383789 + Gm43938 antisense antisense MGP_C57BL6NJ_T0078549.1 MGP_C57BL6NJ_G0031313.1 mouse_genomes_project 6 74830126 74833463 - MGP_C57BL6NJ_P0078549 Vamp5 protein_coding protein_coding MGP_C57BL6NJ_T0078550.1 MGP_C57BL6NJ_G0031313.1 mouse_genomes_project 6 74830360 74842931 - MGP_C57BL6NJ_P0078550 Vamp5 protein_coding protein_coding MGP_C57BL6NJ_T0078551.1 MGP_C57BL6NJ_G0031313.1 mouse_genomes_project 6 74830366 74842977 - MGP_C57BL6NJ_P0078551 Vamp5 protein_coding protein_coding MGP_C57BL6NJ_T0002816.1 MGP_C57BL6NJ_G0002680.1 mouse_genomes_project 6 40581631 40582093 + MGP_C57BL6NJ_P0002816 Trbv13-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002817.1 MGP_C57BL6NJ_G0002680.1 mouse_genomes_project 6 40581660 40582093 + MGP_C57BL6NJ_P0002817 Trbv13-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0078848.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87119257 87138243 + MGP_C57BL6NJ_P0078848 Atp6v1b1 protein_coding protein_coding MGP_C57BL6NJ_T0078849.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87119316 87127045 + Atp6v1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0078850.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87119331 87127573 + MGP_C57BL6NJ_P0078850 Atp6v1b1 protein_coding protein_coding MGP_C57BL6NJ_T0078851.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87119361 87131011 + MGP_C57BL6NJ_P0078851 Atp6v1b1 protein_coding protein_coding MGP_C57BL6NJ_T0078852.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87128100 87130118 + Atp6v1b1 protein_coding retained_intron MGP_C57BL6NJ_T0078853.1 MGP_C57BL6NJ_G0031377.1 mouse_genomes_project 6 87136526 87137620 + Atp6v1b1 protein_coding retained_intron MGP_C57BL6NJ_T0005072.1 MGP_C57BL6NJ_G0004348.1 mouse_genomes_project 6 14898978 15088308 - Gm15581 antisense antisense MGP_C57BL6NJ_T0002051.1 MGP_C57BL6NJ_G0001942.1 mouse_genomes_project 6 1615607 1620285 + TEC TEC MGP_C57BL6NJ_T0081166.1 MGP_C57BL6NJ_G0031871.1 mouse_genomes_project 6 145169312 145174851 + BC049715 protein_coding retained_intron MGP_C57BL6NJ_T0081167.1 MGP_C57BL6NJ_G0031871.1 mouse_genomes_project 6 145169671 145181406 + MGP_C57BL6NJ_P0081167 BC049715 protein_coding protein_coding MGP_C57BL6NJ_T0081168.1 MGP_C57BL6NJ_G0031871.1 mouse_genomes_project 6 145170529 145182144 + MGP_C57BL6NJ_P0081168 BC049715 protein_coding protein_coding MGP_C57BL6NJ_T0081172.1 MGP_C57BL6NJ_G0031871.1 mouse_genomes_project 6 145172589 145182270 + MGP_C57BL6NJ_P0081172 BC049715 protein_coding protein_coding MGP_C57BL6NJ_T0081173.1 MGP_C57BL6NJ_G0031871.1 mouse_genomes_project 6 145181371 145182115 + MGP_C57BL6NJ_P0081173 BC049715 protein_coding protein_coding MGP_C57BL6NJ_T0002154.1 MGP_C57BL6NJ_G0002045.1 mouse_genomes_project 6 75238239 75241041 - TEC TEC MGP_C57BL6NJ_T0081026.1 MGP_C57BL6NJ_G0031831.1 mouse_genomes_project 6 140657888 140658890 + MGP_C57BL6NJ_P0081026 Tas2r123 protein_coding protein_coding MGP_C57BL6NJ_T0081294.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149296929 149371654 + MGP_C57BL6NJ_P0081294 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081295.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149296935 149343206 + MGP_C57BL6NJ_P0081295 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081296.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149297538 149370591 + MGP_C57BL6NJ_P0081296 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081297.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149298149 149339651 + MGP_C57BL6NJ_P0081297 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081298.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149300036 149340733 + MGP_C57BL6NJ_P0081298 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081299.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149309612 149311043 + Aebp2 protein_coding retained_intron MGP_C57BL6NJ_T0081300.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149310626 149342325 + MGP_C57BL6NJ_P0081300 Aebp2 protein_coding protein_coding MGP_C57BL6NJ_T0081301.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149324403 149339937 + Aebp2 protein_coding processed_transcript MGP_C57BL6NJ_T0081302.1 MGP_C57BL6NJ_G0031893.1 mouse_genomes_project 6 149334723 149336297 + Aebp2 protein_coding processed_transcript MGP_C57BL6NJ_T0080987.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138832042 138833403 - Magohb protein_coding retained_intron MGP_C57BL6NJ_T0080988.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138832052 138841783 - MGP_C57BL6NJ_P0080988 Magohb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080989.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138832158 138841817 - MGP_C57BL6NJ_P0080989 Magohb protein_coding protein_coding MGP_C57BL6NJ_T0080990.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138832194 138838328 - Magohb protein_coding retained_intron MGP_C57BL6NJ_T0080991.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138832230 138841803 - MGP_C57BL6NJ_P0080991 Magohb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0080992.1 MGP_C57BL6NJ_G0031808.1 mouse_genomes_project 6 138835706 138841803 - MGP_C57BL6NJ_P0080992 Magohb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011903.1 MGP_C57BL6NJ_G0009988.1 mouse_genomes_project 6 52531406 52531531 + Gm27867 misc_RNA misc_RNA MGP_C57BL6NJ_T0015918.1 MGP_C57BL6NJ_G0013963.1 mouse_genomes_project 6 103316455 103316931 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0079829.1 MGP_C57BL6NJ_G0031565.1 mouse_genomes_project 6 118995997 119008822 + MGP_C57BL6NJ_P0079829 Il17rc protein_coding protein_coding MGP_C57BL6NJ_T0079830.1 MGP_C57BL6NJ_G0031565.1 mouse_genomes_project 6 118996853 119001017 + MGP_C57BL6NJ_P0079830 Il17rc protein_coding protein_coding MGP_C57BL6NJ_T0079831.1 MGP_C57BL6NJ_G0031565.1 mouse_genomes_project 6 118997364 119008822 + MGP_C57BL6NJ_P0079831 Il17rc protein_coding protein_coding MGP_C57BL6NJ_T0079832.1 MGP_C57BL6NJ_G0031565.1 mouse_genomes_project 6 118998833 119001323 + MGP_C57BL6NJ_P0079832 Il17rc protein_coding protein_coding MGP_C57BL6NJ_T0079833.1 MGP_C57BL6NJ_G0031565.1 mouse_genomes_project 6 119001166 119003880 + Il17rc protein_coding retained_intron MGP_C57BL6NJ_T0101823.1 MGP_C57BL6NJ_G0039869.1 mouse_genomes_project 6 122522250 122522374 - Gm22882 snoRNA snoRNA MGP_C57BL6NJ_T0077983.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50501181 50594820 - MGP_C57BL6NJ_P0077983 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077984.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50503034 50508202 - Osbpl3 protein_coding retained_intron MGP_C57BL6NJ_T0077985.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50503538 50581687 - MGP_C57BL6NJ_P0077985 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077986.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50504650 50679813 - MGP_C57BL6NJ_P0077986 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077987.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50504656 50581790 - MGP_C57BL6NJ_P0077987 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077988.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50508061 50594820 - Osbpl3 protein_coding retained_intron MGP_C57BL6NJ_T0077989.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50536608 50563429 - MGP_C57BL6NJ_P0077989 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077990.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50559556 50679804 - MGP_C57BL6NJ_P0077990 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077991.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50564291 50612289 - MGP_C57BL6NJ_P0077991 Osbpl3 protein_coding protein_coding MGP_C57BL6NJ_T0077992.1 MGP_C57BL6NJ_G0031165.1 mouse_genomes_project 6 50628840 50679844 - Osbpl3 protein_coding processed_transcript MGP_C57BL6NJ_T0002123.1 MGP_C57BL6NJ_G0002014.1 mouse_genomes_project 6 52636680 52637923 - TEC TEC MGP_C57BL6NJ_T0099496.1 MGP_C57BL6NJ_G0037549.1 mouse_genomes_project 6 87354224 87358146 + Gm43920 sense_intronic sense_intronic MGP_C57BL6NJ_T0083916.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43488983 43506651 + MGP_C57BL6NJ_P0083916 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083917.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43489311 43509981 + MGP_C57BL6NJ_P0083917 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083918.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43489336 43507461 + MGP_C57BL6NJ_P0083918 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083919.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43489338 43508100 + MGP_C57BL6NJ_P0083919 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083920.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43489344 43510034 + MGP_C57BL6NJ_P0083920 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083921.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43489357 43510739 + MGP_C57BL6NJ_P0083921 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0083922.1 MGP_C57BL6NJ_G0032577.1 mouse_genomes_project 7 43506686 43509699 + MGP_C57BL6NJ_P0083922 Zfp788 protein_coding protein_coding MGP_C57BL6NJ_T0005364.1 MGP_C57BL6NJ_G0004561.1 mouse_genomes_project 7 39012217 39014766 + 4930505M18Rik antisense antisense MGP_C57BL6NJ_T0016230.1 MGP_C57BL6NJ_G0014275.1 mouse_genomes_project 7 42676346 42684443 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088216.1 MGP_C57BL6NJ_G0033737.1 mouse_genomes_project 7 152430381 152458999 - MGP_C57BL6NJ_P0088216 Tollip protein_coding protein_coding MGP_C57BL6NJ_T0088217.1 MGP_C57BL6NJ_G0033737.1 mouse_genomes_project 7 152438164 152458892 - MGP_C57BL6NJ_P0088217 Tollip protein_coding protein_coding MGP_C57BL6NJ_T0088218.1 MGP_C57BL6NJ_G0033737.1 mouse_genomes_project 7 152448576 152459007 - MGP_C57BL6NJ_P0088218 Tollip protein_coding protein_coding MGP_C57BL6NJ_T0016362.1 MGP_C57BL6NJ_G0014407.1 mouse_genomes_project 7 131305141 131305865 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101876.1 MGP_C57BL6NJ_G0039922.1 mouse_genomes_project 7 74341010 74341139 - Gm24120 snoRNA snoRNA MGP_C57BL6NJ_T0086281.1 MGP_C57BL6NJ_G0033283.1 mouse_genomes_project 7 115022451 115023399 - MGP_C57BL6NJ_P0086281 protein_coding protein_coding MGP_C57BL6NJ_T0084389.1 MGP_C57BL6NJ_G0032714.1 mouse_genomes_project 7 48123206 48139613 + Bcat2 protein_coding retained_intron MGP_C57BL6NJ_T0084390.1 MGP_C57BL6NJ_G0032714.1 mouse_genomes_project 7 48123229 48142570 + MGP_C57BL6NJ_P0084390 Bcat2 protein_coding protein_coding MGP_C57BL6NJ_T0084391.1 MGP_C57BL6NJ_G0032714.1 mouse_genomes_project 7 48123232 48142576 + MGP_C57BL6NJ_P0084391 Bcat2 protein_coding protein_coding MGP_C57BL6NJ_T0084392.1 MGP_C57BL6NJ_G0032714.1 mouse_genomes_project 7 48127956 48137879 + MGP_C57BL6NJ_P0084392 Bcat2 protein_coding protein_coding MGP_C57BL6NJ_T0084393.1 MGP_C57BL6NJ_G0032714.1 mouse_genomes_project 7 48128078 48137998 + Bcat2 protein_coding retained_intron MGP_C57BL6NJ_T0087571.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138232883 138292464 + Inpp5f protein_coding processed_transcript MGP_C57BL6NJ_T0087572.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138232915 138317431 + MGP_C57BL6NJ_P0087572 Inpp5f protein_coding protein_coding MGP_C57BL6NJ_T0087573.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138279890 138298316 + Inpp5f protein_coding retained_intron MGP_C57BL6NJ_T0087574.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138284562 138289398 + Inpp5f protein_coding processed_transcript MGP_C57BL6NJ_T0087575.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138288517 138289603 + Inpp5f protein_coding retained_intron MGP_C57BL6NJ_T0087576.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138300524 138317280 + Inpp5f protein_coding retained_intron MGP_C57BL6NJ_T0087577.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138309494 138314657 + MGP_C57BL6NJ_P0087577 Inpp5f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087578.1 MGP_C57BL6NJ_G0033578.1 mouse_genomes_project 7 138310247 138317282 + MGP_C57BL6NJ_P0087578 Inpp5f protein_coding protein_coding MGP_C57BL6NJ_T0103409.1 MGP_C57BL6NJ_G0041201.1 mouse_genomes_project 7 34426368 34428160 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018906.1 MGP_C57BL6NJ_G0016097.1 mouse_genomes_project 7 153666472 153698076 - R74862 processed_transcript processed_transcript MGP_C57BL6NJ_T0018907.1 MGP_C57BL6NJ_G0016097.1 mouse_genomes_project 7 153677309 153698345 - R74862 processed_transcript processed_transcript MGP_C57BL6NJ_T0018908.1 MGP_C57BL6NJ_G0016097.1 mouse_genomes_project 7 153677972 153698336 - R74862 processed_transcript processed_transcript MGP_C57BL6NJ_T0009100.1 MGP_C57BL6NJ_G0007346.1 mouse_genomes_project 7 77709586 77712780 + Gm44725 lincRNA lincRNA MGP_C57BL6NJ_T0100622.1 MGP_C57BL6NJ_G0038668.1 mouse_genomes_project 7 135938837 135938943 - Gm25579 snRNA snRNA MGP_C57BL6NJ_T0082256.1 MGP_C57BL6NJ_G0032148.1 mouse_genomes_project 7 14654629 14663525 - MGP_C57BL6NJ_P0082256 C5ar2 protein_coding protein_coding MGP_C57BL6NJ_T0082257.1 MGP_C57BL6NJ_G0032148.1 mouse_genomes_project 7 14654629 14665348 - MGP_C57BL6NJ_P0082257 C5ar2 protein_coding protein_coding MGP_C57BL6NJ_T0086057.1 MGP_C57BL6NJ_G0033168.1 mouse_genomes_project 7 111119293 111120241 + MGP_C57BL6NJ_P0086057 Olfr65 protein_coding protein_coding MGP_C57BL6NJ_T0083160.1 MGP_C57BL6NJ_G0032407.1 mouse_genomes_project 7 28495312 28498104 + MGP_C57BL6NJ_P0083160 Ccer2 protein_coding protein_coding MGP_C57BL6NJ_T0103509.1 MGP_C57BL6NJ_G0041301.1 mouse_genomes_project 7 91573056 91573376 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011082.1 MGP_C57BL6NJ_G0009167.1 mouse_genomes_project 7 105157 105241 + Mir294 miRNA miRNA MGP_C57BL6NJ_T0018904.1 MGP_C57BL6NJ_G0016096.1 mouse_genomes_project 7 153145907 153161705 - Nctc1 processed_transcript antisense MGP_C57BL6NJ_T0018905.1 MGP_C57BL6NJ_G0016096.1 mouse_genomes_project 7 153156808 153161705 - Nctc1 processed_transcript retained_intron MGP_C57BL6NJ_T0085756.1 MGP_C57BL6NJ_G0033052.1 mouse_genomes_project 7 107281445 107295846 + Ucp3 protein_coding retained_intron MGP_C57BL6NJ_T0085757.1 MGP_C57BL6NJ_G0033052.1 mouse_genomes_project 7 107281446 107296852 + MGP_C57BL6NJ_P0085757 Ucp3 protein_coding protein_coding MGP_C57BL6NJ_T0085758.1 MGP_C57BL6NJ_G0033052.1 mouse_genomes_project 7 107281448 107295726 + MGP_C57BL6NJ_P0085758 Ucp3 protein_coding protein_coding MGP_C57BL6NJ_T0085759.1 MGP_C57BL6NJ_G0033052.1 mouse_genomes_project 7 107281449 107295829 + Ucp3 protein_coding retained_intron MGP_C57BL6NJ_T0083697.1 MGP_C57BL6NJ_G0032530.1 mouse_genomes_project 7 34669650 34670834 + MGP_C57BL6NJ_P0083697 Scgb1b24 protein_coding protein_coding MGP_C57BL6NJ_T0087986.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356430 151381643 + MGP_C57BL6NJ_P0087986 Psmd13 protein_coding protein_coding MGP_C57BL6NJ_T0087987.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356876 151380913 + Psmd13 protein_coding retained_intron MGP_C57BL6NJ_T0087988.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356891 151361728 + Psmd13 protein_coding processed_transcript MGP_C57BL6NJ_T0087989.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356900 151361326 + Psmd13 protein_coding processed_transcript MGP_C57BL6NJ_T0087990.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356914 151364182 + Psmd13 protein_coding processed_transcript MGP_C57BL6NJ_T0087991.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356929 151361641 + Psmd13 protein_coding retained_intron MGP_C57BL6NJ_T0087992.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356934 151381289 + MGP_C57BL6NJ_P0087992 Psmd13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087993.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356934 151381234 + MGP_C57BL6NJ_P0087993 Psmd13 protein_coding protein_coding MGP_C57BL6NJ_T0087994.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151356934 151381289 + MGP_C57BL6NJ_P0087994 Psmd13 protein_coding protein_coding MGP_C57BL6NJ_T0087995.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151357962 151360894 + Psmd13 protein_coding processed_transcript MGP_C57BL6NJ_T0087996.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151363862 151381396 + MGP_C57BL6NJ_P0087996 Psmd13 protein_coding protein_coding MGP_C57BL6NJ_T0087997.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151364851 151380841 + Psmd13 protein_coding retained_intron MGP_C57BL6NJ_T0087998.1 MGP_C57BL6NJ_G0033692.1 mouse_genomes_project 7 151370857 151381644 + MGP_C57BL6NJ_P0087998 Psmd13 protein_coding protein_coding MGP_C57BL6NJ_T0086032.1 MGP_C57BL6NJ_G0033143.1 mouse_genomes_project 7 110599150 110600101 + MGP_C57BL6NJ_P0086032 Olfr608 protein_coding protein_coding MGP_C57BL6NJ_T0083958.1 MGP_C57BL6NJ_G0032593.1 mouse_genomes_project 7 45608014 45626045 + MGP_C57BL6NJ_P0083958 Siglecg protein_coding protein_coding MGP_C57BL6NJ_T0083959.1 MGP_C57BL6NJ_G0032593.1 mouse_genomes_project 7 45608049 45626045 + Siglecg protein_coding retained_intron MGP_C57BL6NJ_T0083960.1 MGP_C57BL6NJ_G0032593.1 mouse_genomes_project 7 45608078 45626045 + Siglecg protein_coding retained_intron MGP_C57BL6NJ_T0083961.1 MGP_C57BL6NJ_G0032593.1 mouse_genomes_project 7 45608283 45617891 + Siglecg protein_coding retained_intron MGP_C57BL6NJ_T0087694.1 MGP_C57BL6NJ_G0033604.1 mouse_genomes_project 7 141924537 142038474 - MGP_C57BL6NJ_P0087694 Cpxm2 protein_coding protein_coding MGP_C57BL6NJ_T0087695.1 MGP_C57BL6NJ_G0033604.1 mouse_genomes_project 7 141936355 141941587 - Cpxm2 protein_coding retained_intron MGP_C57BL6NJ_T0087696.1 MGP_C57BL6NJ_G0033604.1 mouse_genomes_project 7 141938788 142038357 - Cpxm2 protein_coding retained_intron MGP_C57BL6NJ_T0087697.1 MGP_C57BL6NJ_G0033604.1 mouse_genomes_project 7 141991896 142029348 - Cpxm2 protein_coding processed_transcript MGP_C57BL6NJ_T0005326.1 MGP_C57BL6NJ_G0004533.1 mouse_genomes_project 7 24454986 24456545 + 4933430L12Rik antisense antisense MGP_C57BL6NJ_T0087890.1 MGP_C57BL6NJ_G0033650.1 mouse_genomes_project 7 150391145 150397409 - 6430531B16Rik protein_coding retained_intron MGP_C57BL6NJ_T0087891.1 MGP_C57BL6NJ_G0033650.1 mouse_genomes_project 7 150391145 150397441 - MGP_C57BL6NJ_P0087891 6430531B16Rik protein_coding protein_coding MGP_C57BL6NJ_T0087892.1 MGP_C57BL6NJ_G0033650.1 mouse_genomes_project 7 150394182 150397409 - MGP_C57BL6NJ_P0087892 6430531B16Rik protein_coding protein_coding MGP_C57BL6NJ_T0083360.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30097009 30107134 - MGP_C57BL6NJ_P0083360 Capns1 protein_coding protein_coding MGP_C57BL6NJ_T0083361.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30097057 30105181 - MGP_C57BL6NJ_P0083361 Capns1 protein_coding protein_coding MGP_C57BL6NJ_T0083362.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30097235 30102301 - Capns1 protein_coding processed_transcript MGP_C57BL6NJ_T0083363.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30097550 30105856 - Capns1 protein_coding processed_transcript MGP_C57BL6NJ_T0083364.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30097574 30104485 - Capns1 protein_coding processed_transcript MGP_C57BL6NJ_T0083365.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30102123 30106128 - MGP_C57BL6NJ_P0083365 Capns1 protein_coding protein_coding MGP_C57BL6NJ_T0083366.1 MGP_C57BL6NJ_G0032454.1 mouse_genomes_project 7 30105620 30107006 - Capns1 protein_coding retained_intron MGP_C57BL6NJ_T0103538.1 MGP_C57BL6NJ_G0041330.1 mouse_genomes_project 7 111420637 111421514 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082459.1 MGP_C57BL6NJ_G0032213.1 mouse_genomes_project 7 18077161 18097268 + MGP_C57BL6NJ_P0082459 Opa3 protein_coding protein_coding MGP_C57BL6NJ_T0082460.1 MGP_C57BL6NJ_G0032213.1 mouse_genomes_project 7 18077210 18077940 + Opa3 protein_coding retained_intron MGP_C57BL6NJ_T0082461.1 MGP_C57BL6NJ_G0032213.1 mouse_genomes_project 7 18077210 18110578 + MGP_C57BL6NJ_P0082461 Opa3 protein_coding protein_coding MGP_C57BL6NJ_T0018849.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78208515 78228879 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018850.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213343 78228728 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018851.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213344 78228631 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018852.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213349 78216172 - 1810026B05Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018853.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213550 78226404 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018854.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213571 78228457 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018855.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78213613 78228732 - 1810026B05Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018856.1 MGP_C57BL6NJ_G0016069.1 mouse_genomes_project 7 78225629 78228870 - 1810026B05Rik processed_transcript retained_intron MGP_C57BL6NJ_T0099516.1 MGP_C57BL6NJ_G0037568.1 mouse_genomes_project 7 128306931 128309234 - Gm26967 sense_intronic sense_intronic MGP_C57BL6NJ_T0009123.1 MGP_C57BL6NJ_G0007364.1 mouse_genomes_project 7 83826146 83828525 + 5330411O13Rik lincRNA lincRNA MGP_C57BL6NJ_T0082231.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14531549 14533179 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082232.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14531549 14539078 + MGP_C57BL6NJ_P0082232 Kptn protein_coding protein_coding MGP_C57BL6NJ_T0082233.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14531583 14532627 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082234.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14531873 14535416 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082235.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14532105 14532618 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082236.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14534366 14535379 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082237.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14534433 14535558 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0082238.1 MGP_C57BL6NJ_G0032144.1 mouse_genomes_project 7 14536965 14538926 + Kptn protein_coding retained_intron MGP_C57BL6NJ_T0011196.1 MGP_C57BL6NJ_G0009281.1 mouse_genomes_project 7 153180292 153180376 - Mir675 miRNA miRNA MGP_C57BL6NJ_T0103364.1 MGP_C57BL6NJ_G0041157.1 mouse_genomes_project 7 12830978 13869414 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016147.1 MGP_C57BL6NJ_G0014192.1 mouse_genomes_project 7 12296255 12296709 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011170.1 MGP_C57BL6NJ_G0009255.1 mouse_genomes_project 7 108389088 108389156 + Mir139 miRNA miRNA MGP_C57BL6NJ_T0016215.1 MGP_C57BL6NJ_G0014260.1 mouse_genomes_project 7 34702262 34702989 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086277.1 MGP_C57BL6NJ_G0033279.1 mouse_genomes_project 7 114923127 114924102 + MGP_C57BL6NJ_P0086277 Olfr713 protein_coding protein_coding MGP_C57BL6NJ_T0103515.1 MGP_C57BL6NJ_G0041307.1 mouse_genomes_project 7 91898820 91899717 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085983.1 MGP_C57BL6NJ_G0033098.1 mouse_genomes_project 7 109587057 109596286 - MGP_C57BL6NJ_P0085983 Trim21 protein_coding protein_coding MGP_C57BL6NJ_T0085984.1 MGP_C57BL6NJ_G0033098.1 mouse_genomes_project 7 109587057 109596286 - MGP_C57BL6NJ_P0085984 Trim21 protein_coding protein_coding MGP_C57BL6NJ_T0086628.1 MGP_C57BL6NJ_G0033391.1 mouse_genomes_project 7 127085131 127143596 - MGP_C57BL6NJ_P0086628 Syt17 protein_coding protein_coding MGP_C57BL6NJ_T0086629.1 MGP_C57BL6NJ_G0033391.1 mouse_genomes_project 7 127085132 127142596 - Syt17 protein_coding retained_intron MGP_C57BL6NJ_T0086630.1 MGP_C57BL6NJ_G0033391.1 mouse_genomes_project 7 127085134 127148227 - MGP_C57BL6NJ_P0086630 Syt17 protein_coding protein_coding MGP_C57BL6NJ_T0086631.1 MGP_C57BL6NJ_G0033391.1 mouse_genomes_project 7 127111848 127148195 - MGP_C57BL6NJ_P0086631 Syt17 protein_coding protein_coding MGP_C57BL6NJ_T0009063.1 MGP_C57BL6NJ_G0007318.1 mouse_genomes_project 7 52841840 52843279 - Gm26856 lincRNA lincRNA MGP_C57BL6NJ_T0009067.1 MGP_C57BL6NJ_G0007321.1 mouse_genomes_project 7 67215189 67308246 - 4930554H23Rik lincRNA lincRNA MGP_C57BL6NJ_T0083929.1 MGP_C57BL6NJ_G0032583.1 mouse_genomes_project 7 44420399 44476747 - MGP_C57BL6NJ_P0083929 protein_coding protein_coding MGP_C57BL6NJ_T0083930.1 MGP_C57BL6NJ_G0032583.1 mouse_genomes_project 7 44438073 44439025 - protein_coding retained_intron MGP_C57BL6NJ_T0083931.1 MGP_C57BL6NJ_G0032583.1 mouse_genomes_project 7 44438847 44476761 - MGP_C57BL6NJ_P0083931 protein_coding protein_coding MGP_C57BL6NJ_T0083932.1 MGP_C57BL6NJ_G0032583.1 mouse_genomes_project 7 44455540 44476746 - protein_coding retained_intron MGP_C57BL6NJ_T0086725.1 MGP_C57BL6NJ_G0033415.1 mouse_genomes_project 7 128728447 128750874 + MGP_C57BL6NJ_P0086725 Lyrm1 protein_coding protein_coding MGP_C57BL6NJ_T0086726.1 MGP_C57BL6NJ_G0033415.1 mouse_genomes_project 7 128728453 128750405 + MGP_C57BL6NJ_P0086726 Lyrm1 protein_coding protein_coding MGP_C57BL6NJ_T0086727.1 MGP_C57BL6NJ_G0033415.1 mouse_genomes_project 7 128728878 128750870 + MGP_C57BL6NJ_P0086727 Lyrm1 protein_coding protein_coding MGP_C57BL6NJ_T0086728.1 MGP_C57BL6NJ_G0033415.1 mouse_genomes_project 7 128732692 128750876 + MGP_C57BL6NJ_P0086728 Lyrm1 protein_coding protein_coding MGP_C57BL6NJ_T0103351.1 MGP_C57BL6NJ_G0041144.1 mouse_genomes_project 7 12289268 12303204 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002385.1 MGP_C57BL6NJ_G0002275.1 mouse_genomes_project 7 68150083 68150232 + TEC TEC MGP_C57BL6NJ_T0016371.1 MGP_C57BL6NJ_G0014416.1 mouse_genomes_project 7 136113237 136113711 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083694.1 MGP_C57BL6NJ_G0032527.1 mouse_genomes_project 7 34435078 34436402 + MGP_C57BL6NJ_P0083694 protein_coding protein_coding MGP_C57BL6NJ_T0083735.1 MGP_C57BL6NJ_G0032540.1 mouse_genomes_project 7 35231211 35231667 + MGP_C57BL6NJ_P0083735 Gm6096 protein_coding protein_coding MGP_C57BL6NJ_T0016114.1 MGP_C57BL6NJ_G0014159.1 mouse_genomes_project 7 1130912 1131785 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016251.1 MGP_C57BL6NJ_G0014296.1 mouse_genomes_project 7 44455854 44456223 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083905.1 MGP_C57BL6NJ_G0032574.1 mouse_genomes_project 7 43277880 43306436 - MGP_C57BL6NJ_P0083905 AW146154 protein_coding protein_coding MGP_C57BL6NJ_T0083906.1 MGP_C57BL6NJ_G0032574.1 mouse_genomes_project 7 43281021 43282156 - AW146154 protein_coding retained_intron MGP_C57BL6NJ_T0083907.1 MGP_C57BL6NJ_G0032574.1 mouse_genomes_project 7 43289299 43305954 - AW146154 protein_coding processed_transcript MGP_C57BL6NJ_T0083908.1 MGP_C57BL6NJ_G0032574.1 mouse_genomes_project 7 43290418 43305973 - AW146154 protein_coding processed_transcript MGP_C57BL6NJ_T0087139.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136190424 136228309 + MGP_C57BL6NJ_P0087139 Fam57b protein_coding protein_coding MGP_C57BL6NJ_T0087140.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136207291 136218439 + Fam57b protein_coding processed_transcript MGP_C57BL6NJ_T0087141.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136208644 136211838 + Fam57b protein_coding processed_transcript MGP_C57BL6NJ_T0087142.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136211492 136225626 + MGP_C57BL6NJ_P0087142 Fam57b protein_coding protein_coding MGP_C57BL6NJ_T0087143.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136211493 136228313 + MGP_C57BL6NJ_P0087143 Fam57b protein_coding protein_coding MGP_C57BL6NJ_T0087144.1 MGP_C57BL6NJ_G0033495.1 mouse_genomes_project 7 136222183 136228311 + MGP_C57BL6NJ_P0087144 Fam57b protein_coding protein_coding MGP_C57BL6NJ_T0082891.1 MGP_C57BL6NJ_G0032330.1 mouse_genomes_project 7 25518099 25551755 + MGP_C57BL6NJ_P0082891 protein_coding protein_coding MGP_C57BL6NJ_T0086644.1 MGP_C57BL6NJ_G0033396.1 mouse_genomes_project 7 127444173 127461469 - MGP_C57BL6NJ_P0086644 Gde1 protein_coding protein_coding MGP_C57BL6NJ_T0086645.1 MGP_C57BL6NJ_G0033396.1 mouse_genomes_project 7 127447211 127461071 - MGP_C57BL6NJ_P0086645 Gde1 protein_coding protein_coding MGP_C57BL6NJ_T0011174.1 MGP_C57BL6NJ_G0009259.1 mouse_genomes_project 7 121037264 121037393 + Gm44462 miRNA miRNA MGP_C57BL6NJ_T0082912.1 MGP_C57BL6NJ_G0032339.1 mouse_genomes_project 7 26283299 26309302 + MGP_C57BL6NJ_P0082912 Cyp2a5 protein_coding protein_coding MGP_C57BL6NJ_T0082914.1 MGP_C57BL6NJ_G0032339.1 mouse_genomes_project 7 26283358 26304161 + MGP_C57BL6NJ_P0082914 Cyp2a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082915.1 MGP_C57BL6NJ_G0032339.1 mouse_genomes_project 7 26284198 26304100 + Cyp2a5 protein_coding processed_transcript MGP_C57BL6NJ_T0082916.1 MGP_C57BL6NJ_G0032339.1 mouse_genomes_project 7 26303504 26309322 + MGP_C57BL6NJ_P0082916 Cyp2a5 protein_coding protein_coding MGP_C57BL6NJ_T0082917.1 MGP_C57BL6NJ_G0032339.1 mouse_genomes_project 7 26303980 26309041 + MGP_C57BL6NJ_P0082917 Cyp2a5 protein_coding protein_coding MGP_C57BL6NJ_T0084166.1 MGP_C57BL6NJ_G0032657.1 mouse_genomes_project 7 47124287 47125558 + MGP_C57BL6NJ_P0084166 protein_coding protein_coding MGP_C57BL6NJ_T0087668.1 MGP_C57BL6NJ_G0033595.1 mouse_genomes_project 7 141142503 141146868 + MGP_C57BL6NJ_P0087668 Fam24a protein_coding protein_coding MGP_C57BL6NJ_T0002349.1 MGP_C57BL6NJ_G0002239.1 mouse_genomes_project 7 37971749 37972671 + TEC TEC MGP_C57BL6NJ_T0103381.1 MGP_C57BL6NJ_G0041174.1 mouse_genomes_project 7 22751335 22752225 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102564.1 MGP_C57BL6NJ_G0040399.1 mouse_genomes_project 7 43385994 43386463 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0081863.1 MGP_C57BL6NJ_G0031994.1 mouse_genomes_project 7 1507274 1519128 - protein_coding retained_intron MGP_C57BL6NJ_T0082015.1 MGP_C57BL6NJ_G0032050.1 mouse_genomes_project 7 3734523 3735584 + MGP_C57BL6NJ_P0082015 Olfr1344 protein_coding protein_coding MGP_C57BL6NJ_T0084924.1 MGP_C57BL6NJ_G0032846.1 mouse_genomes_project 7 72477763 72512662 - MGP_C57BL6NJ_P0084924 Pgpep1l protein_coding protein_coding MGP_C57BL6NJ_T0002433.1 MGP_C57BL6NJ_G0002322.1 mouse_genomes_project 7 128293717 128296320 + TEC TEC MGP_C57BL6NJ_T0009137.1 MGP_C57BL6NJ_G0007371.1 mouse_genomes_project 7 85337598 85339201 + Gm45202 lincRNA lincRNA MGP_C57BL6NJ_T0082840.1 MGP_C57BL6NJ_G0032320.1 mouse_genomes_project 7 24938340 24940138 - MGP_C57BL6NJ_P0082840 Bckdha protein_coding protein_coding MGP_C57BL6NJ_T0082841.1 MGP_C57BL6NJ_G0032320.1 mouse_genomes_project 7 24938340 24978611 - MGP_C57BL6NJ_P0082841 Bckdha protein_coding protein_coding MGP_C57BL6NJ_T0086503.1 MGP_C57BL6NJ_G0033369.1 mouse_genomes_project 7 121756219 121759217 - MGP_C57BL6NJ_P0086503 Pth protein_coding protein_coding MGP_C57BL6NJ_T0082748.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24172638 24175772 - MGP_C57BL6NJ_P0082748 Rabac1 protein_coding protein_coding MGP_C57BL6NJ_T0082749.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24172639 24175002 - Rabac1 protein_coding retained_intron MGP_C57BL6NJ_T0082750.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24172647 24175044 - Rabac1 protein_coding processed_transcript MGP_C57BL6NJ_T0082751.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24172647 24175656 - MGP_C57BL6NJ_P0082751 Rabac1 protein_coding protein_coding MGP_C57BL6NJ_T0082752.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24172648 24175245 - Rabac1 protein_coding processed_transcript MGP_C57BL6NJ_T0082753.1 MGP_C57BL6NJ_G0032298.1 mouse_genomes_project 7 24174453 24175570 - Rabac1 protein_coding retained_intron MGP_C57BL6NJ_T0103434.1 MGP_C57BL6NJ_G0041226.1 mouse_genomes_project 7 44304079 44308489 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084382.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48104575 48118105 + MGP_C57BL6NJ_P0084382 Hsd17b14 protein_coding protein_coding MGP_C57BL6NJ_T0084383.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48104619 48118536 + MGP_C57BL6NJ_P0084383 Hsd17b14 protein_coding protein_coding MGP_C57BL6NJ_T0084384.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48105726 48118102 + Hsd17b14 protein_coding retained_intron MGP_C57BL6NJ_T0084385.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48108664 48116793 + Hsd17b14 protein_coding retained_intron MGP_C57BL6NJ_T0084386.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48111505 48116968 + Hsd17b14 protein_coding processed_transcript MGP_C57BL6NJ_T0084387.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48111516 48117471 + Hsd17b14 protein_coding processed_transcript MGP_C57BL6NJ_T0084388.1 MGP_C57BL6NJ_G0032713.1 mouse_genomes_project 7 48112463 48116985 + Hsd17b14 protein_coding processed_transcript MGP_C57BL6NJ_T0103352.1 MGP_C57BL6NJ_G0041145.1 mouse_genomes_project 7 12457374 12457945 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087867.1 MGP_C57BL6NJ_G0033645.1 mouse_genomes_project 7 149946619 149950041 - MGP_C57BL6NJ_P0087867 Nkx6-2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087868.1 MGP_C57BL6NJ_G0033645.1 mouse_genomes_project 7 149948463 149950034 - MGP_C57BL6NJ_P0087868 Nkx6-2 protein_coding protein_coding MGP_C57BL6NJ_T0083346.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29994636 30006523 + Zfp260 protein_coding processed_transcript MGP_C57BL6NJ_T0083347.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29994653 30009854 + MGP_C57BL6NJ_P0083347 Zfp260 protein_coding protein_coding MGP_C57BL6NJ_T0083348.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29995021 29999670 + Zfp260 protein_coding retained_intron MGP_C57BL6NJ_T0083349.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29995028 30006991 + MGP_C57BL6NJ_P0083349 Zfp260 protein_coding protein_coding MGP_C57BL6NJ_T0083350.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29995037 30009851 + Zfp260 protein_coding processed_transcript MGP_C57BL6NJ_T0083351.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29995044 30009846 + MGP_C57BL6NJ_P0083351 Zfp260 protein_coding protein_coding MGP_C57BL6NJ_T0083352.1 MGP_C57BL6NJ_G0032449.1 mouse_genomes_project 7 29997738 29999653 + Zfp260 protein_coding retained_intron MGP_C57BL6NJ_T0016123.1 MGP_C57BL6NJ_G0014168.1 mouse_genomes_project 7 2466349 2466692 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088398.1 MGP_C57BL6NJ_G0033772.1 mouse_genomes_project 7 154316550 154337921 - MGP_C57BL6NJ_P0088398 Tnfrsf23 protein_coding protein_coding MGP_C57BL6NJ_T0085402.1 MGP_C57BL6NJ_G0032946.1 mouse_genomes_project 7 91085188 91102769 - MGP_C57BL6NJ_P0085402 Vmn2r69 protein_coding protein_coding MGP_C57BL6NJ_T0085772.1 MGP_C57BL6NJ_G0033055.1 mouse_genomes_project 7 107357054 107360324 + MGP_C57BL6NJ_P0085772 Coa4 protein_coding protein_coding MGP_C57BL6NJ_T0085773.1 MGP_C57BL6NJ_G0033055.1 mouse_genomes_project 7 107357186 107359427 + MGP_C57BL6NJ_P0085773 Coa4 protein_coding protein_coding MGP_C57BL6NJ_T0087048.1 MGP_C57BL6NJ_G0033482.1 mouse_genomes_project 7 135962377 135968324 - MGP_C57BL6NJ_P0087048 Il27 protein_coding protein_coding MGP_C57BL6NJ_T0088084.1 MGP_C57BL6NJ_G0033714.1 mouse_genomes_project 7 151801650 151809352 - MGP_C57BL6NJ_P0088084 Cdhr5 protein_coding protein_coding MGP_C57BL6NJ_T0088085.1 MGP_C57BL6NJ_G0033714.1 mouse_genomes_project 7 151801650 151809352 - MGP_C57BL6NJ_P0088085 Cdhr5 protein_coding protein_coding MGP_C57BL6NJ_T0087969.1 MGP_C57BL6NJ_G0033688.1 mouse_genomes_project 7 151322215 151325429 + MGP_C57BL6NJ_P0087969 Odf3 protein_coding protein_coding MGP_C57BL6NJ_T0087970.1 MGP_C57BL6NJ_G0033688.1 mouse_genomes_project 7 151322233 151325419 + MGP_C57BL6NJ_P0087970 Odf3 protein_coding protein_coding MGP_C57BL6NJ_T0087971.1 MGP_C57BL6NJ_G0033688.1 mouse_genomes_project 7 151322234 151325422 + Odf3 protein_coding retained_intron MGP_C57BL6NJ_T0103400.1 MGP_C57BL6NJ_G0041192.1 mouse_genomes_project 7 32219286 32221432 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016178.1 MGP_C57BL6NJ_G0014223.1 mouse_genomes_project 7 25232446 25232818 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088356.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153713813 153719222 - MGP_C57BL6NJ_P0088356 Trpm5 protein_coding protein_coding MGP_C57BL6NJ_T0088363.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153715751 153718698 - MGP_C57BL6NJ_P0088363 Trpm5 protein_coding protein_coding MGP_C57BL6NJ_T0088364.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153715877 153719514 - Trpm5 protein_coding retained_intron MGP_C57BL6NJ_T0088365.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153716189 153731875 - Trpm5 protein_coding retained_intron MGP_C57BL6NJ_T0088366.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153716449 153739303 - MGP_C57BL6NJ_P0088366 Trpm5 protein_coding protein_coding MGP_C57BL6NJ_T0088367.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153716838 153731790 - Trpm5 protein_coding retained_intron MGP_C57BL6NJ_T0088368.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153717002 153739267 - MGP_C57BL6NJ_P0088368 Trpm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088369.1 MGP_C57BL6NJ_G0033762.1 mouse_genomes_project 7 153725376 153726583 - Trpm5 protein_coding retained_intron MGP_C57BL6NJ_T0085417.1 MGP_C57BL6NJ_G0032960.1 mouse_genomes_project 7 92197367 92198407 - MGP_C57BL6NJ_P0085417 Olfr303 protein_coding protein_coding MGP_C57BL6NJ_T0016271.1 MGP_C57BL6NJ_G0014316.1 mouse_genomes_project 7 58603027 58604833 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083512.1 MGP_C57BL6NJ_G0032482.1 mouse_genomes_project 7 30559696 30562958 - MGP_C57BL6NJ_P0083512 Zbtb32 protein_coding protein_coding MGP_C57BL6NJ_T0083513.1 MGP_C57BL6NJ_G0032482.1 mouse_genomes_project 7 30559698 30568885 - MGP_C57BL6NJ_P0083513 Zbtb32 protein_coding protein_coding MGP_C57BL6NJ_T0083514.1 MGP_C57BL6NJ_G0032482.1 mouse_genomes_project 7 30567947 30568925 - Zbtb32 protein_coding processed_transcript MGP_C57BL6NJ_T0103493.1 MGP_C57BL6NJ_G0041285.1 mouse_genomes_project 7 90714608 90714993 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082088.1 MGP_C57BL6NJ_G0032097.1 mouse_genomes_project 7 10816759 10827184 + MGP_C57BL6NJ_P0082088 Zscan22 protein_coding protein_coding MGP_C57BL6NJ_T0082089.1 MGP_C57BL6NJ_G0032097.1 mouse_genomes_project 7 10816780 10828028 + MGP_C57BL6NJ_P0082089 Zscan22 protein_coding protein_coding MGP_C57BL6NJ_T0082090.1 MGP_C57BL6NJ_G0032097.1 mouse_genomes_project 7 10816785 10826482 + MGP_C57BL6NJ_P0082090 Zscan22 protein_coding protein_coding MGP_C57BL6NJ_T0082091.1 MGP_C57BL6NJ_G0032097.1 mouse_genomes_project 7 10816811 10827187 + MGP_C57BL6NJ_P0082091 Zscan22 protein_coding protein_coding MGP_C57BL6NJ_T0005341.1 MGP_C57BL6NJ_G0004543.1 mouse_genomes_project 7 29404708 29407159 - Gm29326 antisense antisense MGP_C57BL6NJ_T0086054.1 MGP_C57BL6NJ_G0033165.1 mouse_genomes_project 7 111054722 111056218 - MGP_C57BL6NJ_P0086054 Hbb-y protein_coding protein_coding MGP_C57BL6NJ_T0085406.1 MGP_C57BL6NJ_G0032950.1 mouse_genomes_project 7 91618280 91636192 - MGP_C57BL6NJ_P0085406 Vmn2r73 protein_coding protein_coding MGP_C57BL6NJ_T0009169.1 MGP_C57BL6NJ_G0007391.1 mouse_genomes_project 7 107255192 107285457 - Gm10603 lincRNA lincRNA MGP_C57BL6NJ_T0009170.1 MGP_C57BL6NJ_G0007391.1 mouse_genomes_project 7 107267854 107275646 - Gm10603 lincRNA lincRNA MGP_C57BL6NJ_T0009171.1 MGP_C57BL6NJ_G0007391.1 mouse_genomes_project 7 107272032 107285462 - Gm10603 lincRNA lincRNA MGP_C57BL6NJ_T0082181.1 MGP_C57BL6NJ_G0032126.1 mouse_genomes_project 7 12530358 12561724 - MGP_C57BL6NJ_P0082181 Sult2a8 protein_coding protein_coding MGP_C57BL6NJ_T0082182.1 MGP_C57BL6NJ_G0032126.1 mouse_genomes_project 7 12530361 12568412 - MGP_C57BL6NJ_P0082182 Sult2a8 protein_coding protein_coding MGP_C57BL6NJ_T0082183.1 MGP_C57BL6NJ_G0032126.1 mouse_genomes_project 7 12535896 12568595 - MGP_C57BL6NJ_P0082183 Sult2a8 protein_coding protein_coding MGP_C57BL6NJ_T0103419.1 MGP_C57BL6NJ_G0041211.1 mouse_genomes_project 7 34881217 34882399 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016210.1 MGP_C57BL6NJ_G0014255.1 mouse_genomes_project 7 34219516 34220074 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086519.1 MGP_C57BL6NJ_G0033374.1 mouse_genomes_project 7 122621420 122661784 - MGP_C57BL6NJ_P0086519 Copb1 protein_coding protein_coding MGP_C57BL6NJ_T0005408.1 MGP_C57BL6NJ_G0004592.1 mouse_genomes_project 7 89077948 89113757 - Gm16638 antisense antisense MGP_C57BL6NJ_T0016257.1 MGP_C57BL6NJ_G0014302.1 mouse_genomes_project 7 45538060 45538298 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085329.1 MGP_C57BL6NJ_G0032921.1 mouse_genomes_project 7 87248680 87302319 - MGP_C57BL6NJ_P0085329 Hdgfrp3 protein_coding protein_coding MGP_C57BL6NJ_T0085330.1 MGP_C57BL6NJ_G0032921.1 mouse_genomes_project 7 87259403 87302305 - MGP_C57BL6NJ_P0085330 Hdgfrp3 protein_coding protein_coding MGP_C57BL6NJ_T0085331.1 MGP_C57BL6NJ_G0032921.1 mouse_genomes_project 7 87265240 87301869 - Hdgfrp3 protein_coding retained_intron MGP_C57BL6NJ_T0099514.1 MGP_C57BL6NJ_G0037567.1 mouse_genomes_project 7 124822909 124824142 - Gm44867 sense_intronic sense_intronic MGP_C57BL6NJ_T0099515.1 MGP_C57BL6NJ_G0037567.1 mouse_genomes_project 7 124822909 124824284 - Gm44867 sense_intronic sense_intronic MGP_C57BL6NJ_T0086074.1 MGP_C57BL6NJ_G0033185.1 mouse_genomes_project 7 111402601 111404899 - MGP_C57BL6NJ_P0086074 Ubqlnl protein_coding protein_coding MGP_C57BL6NJ_T0009249.1 MGP_C57BL6NJ_G0007440.1 mouse_genomes_project 7 153178757 153184004 - lincRNA lincRNA MGP_C57BL6NJ_T0009250.1 MGP_C57BL6NJ_G0007440.1 mouse_genomes_project 7 153178786 153181341 - lincRNA lincRNA MGP_C57BL6NJ_T0009251.1 MGP_C57BL6NJ_G0007440.1 mouse_genomes_project 7 153178862 153179767 - lincRNA lincRNA MGP_C57BL6NJ_T0009252.1 MGP_C57BL6NJ_G0007440.1 mouse_genomes_project 7 153179524 153180139 - lincRNA lincRNA MGP_C57BL6NJ_T0009253.1 MGP_C57BL6NJ_G0007440.1 mouse_genomes_project 7 153179735 153181324 - lincRNA lincRNA MGP_C57BL6NJ_T0101905.1 MGP_C57BL6NJ_G0039951.1 mouse_genomes_project 7 151924517 151924647 - Gm25725 snoRNA snoRNA MGP_C57BL6NJ_T0087584.1 MGP_C57BL6NJ_G0033580.1 mouse_genomes_project 7 138370535 138412399 + MGP_C57BL6NJ_P0087584 Sec23ip protein_coding protein_coding MGP_C57BL6NJ_T0087585.1 MGP_C57BL6NJ_G0033580.1 mouse_genomes_project 7 138370569 138375171 + Sec23ip protein_coding retained_intron MGP_C57BL6NJ_T0087586.1 MGP_C57BL6NJ_G0033580.1 mouse_genomes_project 7 138370627 138379729 + MGP_C57BL6NJ_P0087586 Sec23ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087587.1 MGP_C57BL6NJ_G0033580.1 mouse_genomes_project 7 138371012 138375969 + MGP_C57BL6NJ_P0087587 Sec23ip protein_coding protein_coding MGP_C57BL6NJ_T0101875.1 MGP_C57BL6NJ_G0039921.1 mouse_genomes_project 7 73248752 73248889 - Gm23795 snoRNA snoRNA MGP_C57BL6NJ_T0085814.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108182805 108198132 - MGP_C57BL6NJ_P0085814 Atg16l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085815.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108183028 108198193 - MGP_C57BL6NJ_P0085815 Atg16l2 protein_coding protein_coding MGP_C57BL6NJ_T0085816.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108183030 108183873 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085817.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108183030 108198176 - MGP_C57BL6NJ_P0085817 Atg16l2 protein_coding protein_coding MGP_C57BL6NJ_T0085818.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108183039 108198356 - MGP_C57BL6NJ_P0085818 Atg16l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085819.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108183241 108183990 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085820.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108184057 108185557 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085821.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108184574 108185560 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085822.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108184988 108185802 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085823.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108185417 108192874 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085824.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108185816 108192887 - MGP_C57BL6NJ_P0085824 Atg16l2 protein_coding protein_coding MGP_C57BL6NJ_T0085825.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108187032 108192817 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085826.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108192332 108193274 - Atg16l2 protein_coding retained_intron MGP_C57BL6NJ_T0085827.1 MGP_C57BL6NJ_G0033065.1 mouse_genomes_project 7 108192999 108198176 - MGP_C57BL6NJ_P0085827 Atg16l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016151.1 MGP_C57BL6NJ_G0014196.1 mouse_genomes_project 7 14959795 14960567 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085684.1 MGP_C57BL6NJ_G0033032.1 mouse_genomes_project 7 106084599 106169908 + MGP_C57BL6NJ_P0085684 Gdpd5 protein_coding protein_coding MGP_C57BL6NJ_T0085685.1 MGP_C57BL6NJ_G0033032.1 mouse_genomes_project 7 106084756 106169918 + MGP_C57BL6NJ_P0085685 Gdpd5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086072.1 MGP_C57BL6NJ_G0033183.1 mouse_genomes_project 7 111375212 111377127 - MGP_C57BL6NJ_P0086072 4931431F19Rik protein_coding protein_coding MGP_C57BL6NJ_T0082054.1 MGP_C57BL6NJ_G0032077.1 mouse_genomes_project 7 9645652 9646564 + MGP_C57BL6NJ_P0082054 Vmn1r73 protein_coding protein_coding MGP_C57BL6NJ_T0011962.1 MGP_C57BL6NJ_G0010047.1 mouse_genomes_project 7 146724548 146724856 - Gm24444 misc_RNA misc_RNA MGP_C57BL6NJ_T0009010.1 MGP_C57BL6NJ_G0007278.1 mouse_genomes_project 7 35197537 35203854 + Gm26762 lincRNA lincRNA MGP_C57BL6NJ_T0081915.1 MGP_C57BL6NJ_G0032006.1 mouse_genomes_project 7 1796680 1798875 + MGP_C57BL6NJ_P0081915 Rpl28 protein_coding protein_coding MGP_C57BL6NJ_T0081916.1 MGP_C57BL6NJ_G0032006.1 mouse_genomes_project 7 1796796 1798335 + MGP_C57BL6NJ_P0081916 Rpl28 protein_coding protein_coding MGP_C57BL6NJ_T0081917.1 MGP_C57BL6NJ_G0032006.1 mouse_genomes_project 7 1797205 1797633 + Rpl28 protein_coding retained_intron MGP_C57BL6NJ_T0081918.1 MGP_C57BL6NJ_G0032006.1 mouse_genomes_project 7 1797401 1798371 + MGP_C57BL6NJ_P0081918 Rpl28 protein_coding protein_coding MGP_C57BL6NJ_T0081919.1 MGP_C57BL6NJ_G0032006.1 mouse_genomes_project 7 1797658 1798371 + Rpl28 protein_coding retained_intron MGP_C57BL6NJ_T0016167.1 MGP_C57BL6NJ_G0014212.1 mouse_genomes_project 7 23374330 23377156 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086793.1 MGP_C57BL6NJ_G0033437.1 mouse_genomes_project 7 130647747 130715690 - MGP_C57BL6NJ_P0086793 Usp31 protein_coding protein_coding MGP_C57BL6NJ_T0086794.1 MGP_C57BL6NJ_G0033437.1 mouse_genomes_project 7 130664508 130673811 - Usp31 protein_coding retained_intron MGP_C57BL6NJ_T0016220.1 MGP_C57BL6NJ_G0014265.1 mouse_genomes_project 7 35024752 35024895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016186.1 MGP_C57BL6NJ_G0014231.1 mouse_genomes_project 7 28984222 28984570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086748.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129563047 129587340 + MGP_C57BL6NJ_P0086748 Uqcrc2 protein_coding protein_coding MGP_C57BL6NJ_T0086749.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129563111 129571089 + Uqcrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0086750.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129563386 129573114 + Uqcrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0086751.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129565533 129587023 + Uqcrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0086752.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129572789 129578802 + Uqcrc2 protein_coding retained_intron MGP_C57BL6NJ_T0086753.1 MGP_C57BL6NJ_G0033424.1 mouse_genomes_project 7 129579151 129585731 + Uqcrc2 protein_coding retained_intron MGP_C57BL6NJ_T0083194.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28585586 28595002 + MGP_C57BL6NJ_P0083194 Lgals4 protein_coding protein_coding MGP_C57BL6NJ_T0083195.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28585888 28587579 + Lgals4 protein_coding retained_intron MGP_C57BL6NJ_T0083196.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28585919 28589804 + Lgals4 protein_coding retained_intron MGP_C57BL6NJ_T0083197.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28586255 28592944 + MGP_C57BL6NJ_P0083197 Lgals4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083198.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28587661 28594995 + Lgals4 protein_coding retained_intron MGP_C57BL6NJ_T0083199.1 MGP_C57BL6NJ_G0032413.1 mouse_genomes_project 7 28592735 28594997 + Lgals4 protein_coding retained_intron MGP_C57BL6NJ_T0016344.1 MGP_C57BL6NJ_G0014389.1 mouse_genomes_project 7 111087456 111087807 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084961.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79000724 79313595 - MGP_C57BL6NJ_P0084961 Slco3a1 protein_coding protein_coding MGP_C57BL6NJ_T0084962.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79007163 79313576 - MGP_C57BL6NJ_P0084962 Slco3a1 protein_coding protein_coding MGP_C57BL6NJ_T0084963.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79020676 79313742 - MGP_C57BL6NJ_P0084963 Slco3a1 protein_coding protein_coding MGP_C57BL6NJ_T0084964.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79061070 79081877 - Slco3a1 protein_coding retained_intron MGP_C57BL6NJ_T0084965.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79081431 79313436 - MGP_C57BL6NJ_P0084965 Slco3a1 protein_coding protein_coding MGP_C57BL6NJ_T0084966.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79094952 79261870 - Slco3a1 protein_coding retained_intron MGP_C57BL6NJ_T0084967.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79261773 79311556 - MGP_C57BL6NJ_P0084967 Slco3a1 protein_coding protein_coding MGP_C57BL6NJ_T0084968.1 MGP_C57BL6NJ_G0032855.1 mouse_genomes_project 7 79261920 79289405 - Slco3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0088015.1 MGP_C57BL6NJ_G0033699.1 mouse_genomes_project 7 151507516 151508701 - MGP_C57BL6NJ_P0088015 Ifitm3 protein_coding protein_coding MGP_C57BL6NJ_T0086043.1 MGP_C57BL6NJ_G0033154.1 mouse_genomes_project 7 110827979 110828933 - MGP_C57BL6NJ_P0086043 Olfr623 protein_coding protein_coding MGP_C57BL6NJ_T0087325.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136973549 136984984 + MGP_C57BL6NJ_P0087325 protein_coding protein_coding MGP_C57BL6NJ_T0087326.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136974365 136977564 + protein_coding processed_transcript MGP_C57BL6NJ_T0087327.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136979563 136988047 + MGP_C57BL6NJ_P0087327 protein_coding protein_coding MGP_C57BL6NJ_T0087328.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136979750 136984248 + protein_coding retained_intron MGP_C57BL6NJ_T0087329.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136979983 136984430 + MGP_C57BL6NJ_P0087329 protein_coding protein_coding MGP_C57BL6NJ_T0087330.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136979989 136984840 + MGP_C57BL6NJ_P0087330 protein_coding protein_coding MGP_C57BL6NJ_T0087331.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136981191 136988245 + protein_coding retained_intron MGP_C57BL6NJ_T0087332.1 MGP_C57BL6NJ_G0033533.1 mouse_genomes_project 7 136981405 136982296 + protein_coding retained_intron MGP_C57BL6NJ_T0084484.1 MGP_C57BL6NJ_G0032741.1 mouse_genomes_project 7 48653232 48706893 + MGP_C57BL6NJ_P0084484 Nomo1 protein_coding protein_coding MGP_C57BL6NJ_T0084485.1 MGP_C57BL6NJ_G0032741.1 mouse_genomes_project 7 48675528 48678552 + Nomo1 protein_coding retained_intron MGP_C57BL6NJ_T0084486.1 MGP_C57BL6NJ_G0032741.1 mouse_genomes_project 7 48679824 48682599 + Nomo1 protein_coding retained_intron MGP_C57BL6NJ_T0084487.1 MGP_C57BL6NJ_G0032741.1 mouse_genomes_project 7 48705325 48706485 + Nomo1 protein_coding retained_intron MGP_C57BL6NJ_T0005455.1 MGP_C57BL6NJ_G0004623.1 mouse_genomes_project 7 137060637 137079619 - Gm28198 antisense antisense MGP_C57BL6NJ_T0086184.1 MGP_C57BL6NJ_G0033247.1 mouse_genomes_project 7 113212776 113221025 - MGP_C57BL6NJ_P0086184 Hpx protein_coding protein_coding MGP_C57BL6NJ_T0082923.1 MGP_C57BL6NJ_G0032344.1 mouse_genomes_project 7 26571663 26594756 + MGP_C57BL6NJ_P0082923 Cyp2f2 protein_coding protein_coding MGP_C57BL6NJ_T0082924.1 MGP_C57BL6NJ_G0032344.1 mouse_genomes_project 7 26571715 26578445 + Cyp2f2 protein_coding processed_transcript MGP_C57BL6NJ_T0082925.1 MGP_C57BL6NJ_G0032344.1 mouse_genomes_project 7 26574979 26592332 + MGP_C57BL6NJ_P0082925 Cyp2f2 protein_coding protein_coding MGP_C57BL6NJ_T0103340.1 MGP_C57BL6NJ_G0041133.1 mouse_genomes_project 7 10155285 10156236 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085398.1 MGP_C57BL6NJ_G0032942.1 mouse_genomes_project 7 90442789 90455317 + MGP_C57BL6NJ_P0085398 Olfr291 protein_coding protein_coding MGP_C57BL6NJ_T0081741.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610166 613068 + MGP_C57BL6NJ_P0081741 Rps9 protein_coding protein_coding MGP_C57BL6NJ_T0081742.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610203 613061 + MGP_C57BL6NJ_P0081742 Rps9 protein_coding protein_coding MGP_C57BL6NJ_T0081743.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610206 611043 + Rps9 protein_coding retained_intron MGP_C57BL6NJ_T0081744.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610207 610887 + MGP_C57BL6NJ_P0081744 Rps9 protein_coding protein_coding MGP_C57BL6NJ_T0081745.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610213 611595 + Rps9 protein_coding retained_intron MGP_C57BL6NJ_T0081746.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610490 612547 + MGP_C57BL6NJ_P0081746 Rps9 protein_coding protein_coding MGP_C57BL6NJ_T0081747.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 610529 613060 + MGP_C57BL6NJ_P0081747 Rps9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081748.1 MGP_C57BL6NJ_G0031973.1 mouse_genomes_project 7 611781 612394 + Rps9 protein_coding retained_intron MGP_C57BL6NJ_T0103433.1 MGP_C57BL6NJ_G0041225.1 mouse_genomes_project 7 44250568 44250810 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087905.1 MGP_C57BL6NJ_G0033655.1 mouse_genomes_project 7 150486908 150499569 - MGP_C57BL6NJ_P0087905 Caly protein_coding unknown_likely_coding MGP_C57BL6NJ_T0005296.1 MGP_C57BL6NJ_G0004514.1 mouse_genomes_project 7 569644 573655 + Gm15929 antisense antisense MGP_C57BL6NJ_T0084092.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46892075 46894443 + MGP_C57BL6NJ_P0084092 Aspdh protein_coding protein_coding MGP_C57BL6NJ_T0084093.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46892093 46894019 + MGP_C57BL6NJ_P0084093 Aspdh protein_coding protein_coding MGP_C57BL6NJ_T0084094.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46892101 46893906 + MGP_C57BL6NJ_P0084094 Aspdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084095.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46892110 46893897 + Aspdh protein_coding retained_intron MGP_C57BL6NJ_T0084096.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46892128 46894001 + Aspdh protein_coding processed_transcript MGP_C57BL6NJ_T0084097.1 MGP_C57BL6NJ_G0032645.1 mouse_genomes_project 7 46893153 46894380 + MGP_C57BL6NJ_P0084097 Aspdh protein_coding protein_coding MGP_C57BL6NJ_T0009029.1 MGP_C57BL6NJ_G0007296.1 mouse_genomes_project 7 39421204 39433013 - Gm45106 lincRNA lincRNA MGP_C57BL6NJ_T0082092.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848058 10852455 + MGP_C57BL6NJ_P0082092 Rps5 protein_coding protein_coding MGP_C57BL6NJ_T0082093.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848058 10852454 + MGP_C57BL6NJ_P0082093 Rps5 protein_coding protein_coding MGP_C57BL6NJ_T0082094.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848086 10852263 + MGP_C57BL6NJ_P0082094 Rps5 protein_coding protein_coding MGP_C57BL6NJ_T0082095.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848099 10851989 + Rps5 protein_coding retained_intron MGP_C57BL6NJ_T0082096.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848104 10849133 + Rps5 protein_coding retained_intron MGP_C57BL6NJ_T0082097.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10848205 10852263 + MGP_C57BL6NJ_P0082097 Rps5 protein_coding protein_coding MGP_C57BL6NJ_T0082098.1 MGP_C57BL6NJ_G0032098.1 mouse_genomes_project 7 10851806 10852453 + Rps5 protein_coding retained_intron MGP_C57BL6NJ_T0016113.1 MGP_C57BL6NJ_G0014158.1 mouse_genomes_project 7 966593 966873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081931.1 MGP_C57BL6NJ_G0032010.1 mouse_genomes_project 7 1889633 1911413 + MGP_C57BL6NJ_P0081931 Isoc2a protein_coding protein_coding MGP_C57BL6NJ_T0088049.1 MGP_C57BL6NJ_G0033709.1 mouse_genomes_project 7 151722216 151730125 + Lrrc56 protein_coding retained_intron MGP_C57BL6NJ_T0088050.1 MGP_C57BL6NJ_G0033709.1 mouse_genomes_project 7 151723029 151738917 + MGP_C57BL6NJ_P0088050 Lrrc56 protein_coding protein_coding MGP_C57BL6NJ_T0088051.1 MGP_C57BL6NJ_G0033709.1 mouse_genomes_project 7 151723180 151726321 + Lrrc56 protein_coding processed_transcript MGP_C57BL6NJ_T0088052.1 MGP_C57BL6NJ_G0033709.1 mouse_genomes_project 7 151724971 151729022 + Lrrc56 protein_coding processed_transcript MGP_C57BL6NJ_T0082670.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537134 23550345 + MGP_C57BL6NJ_P0082670 Plaur protein_coding protein_coding MGP_C57BL6NJ_T0082671.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537135 23540065 + Plaur protein_coding retained_intron MGP_C57BL6NJ_T0082672.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537145 23547343 + Plaur protein_coding retained_intron MGP_C57BL6NJ_T0082673.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537150 23550346 + Plaur protein_coding retained_intron MGP_C57BL6NJ_T0082674.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537150 23546376 + MGP_C57BL6NJ_P0082674 Plaur protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082675.1 MGP_C57BL6NJ_G0032277.1 mouse_genomes_project 7 23537150 23550093 + MGP_C57BL6NJ_P0082675 Plaur protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011159.1 MGP_C57BL6NJ_G0009244.1 mouse_genomes_project 7 78506332 78506384 + Mir7234 miRNA miRNA MGP_C57BL6NJ_T0016146.1 MGP_C57BL6NJ_G0014191.1 mouse_genomes_project 7 12095160 12095374 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100617.1 MGP_C57BL6NJ_G0038663.1 mouse_genomes_project 7 129988168 129988271 - Gm25924 snRNA snRNA MGP_C57BL6NJ_T0082216.1 MGP_C57BL6NJ_G0032138.1 mouse_genomes_project 7 14301902 14306938 - MGP_C57BL6NJ_P0082216 protein_coding protein_coding MGP_C57BL6NJ_T0086367.1 MGP_C57BL6NJ_G0033338.1 mouse_genomes_project 7 117837618 117846118 + MGP_C57BL6NJ_P0086367 Akip1 protein_coding protein_coding MGP_C57BL6NJ_T0086368.1 MGP_C57BL6NJ_G0033338.1 mouse_genomes_project 7 117837680 117842902 + MGP_C57BL6NJ_P0086368 Akip1 protein_coding protein_coding MGP_C57BL6NJ_T0086369.1 MGP_C57BL6NJ_G0033338.1 mouse_genomes_project 7 117842761 117845897 + Akip1 protein_coding processed_transcript MGP_C57BL6NJ_T0011176.1 MGP_C57BL6NJ_G0009261.1 mouse_genomes_project 7 123648377 123648457 + Gm27684 miRNA miRNA MGP_C57BL6NJ_T0087999.1 MGP_C57BL6NJ_G0033693.1 mouse_genomes_project 7 151381943 151383447 - MGP_C57BL6NJ_P0087999 Cox8b protein_coding protein_coding MGP_C57BL6NJ_T0085626.1 MGP_C57BL6NJ_G0033017.1 mouse_genomes_project 7 104760980 104819759 - MGP_C57BL6NJ_P0085626 Capn5 protein_coding protein_coding MGP_C57BL6NJ_T0085627.1 MGP_C57BL6NJ_G0033017.1 mouse_genomes_project 7 104763082 104803998 - MGP_C57BL6NJ_P0085627 Capn5 protein_coding protein_coding MGP_C57BL6NJ_T0085629.1 MGP_C57BL6NJ_G0033017.1 mouse_genomes_project 7 104787177 104803866 - Capn5 protein_coding processed_transcript MGP_C57BL6NJ_T0085630.1 MGP_C57BL6NJ_G0033017.1 mouse_genomes_project 7 104803636 104806564 - MGP_C57BL6NJ_P0085630 Capn5 protein_coding protein_coding MGP_C57BL6NJ_T0085631.1 MGP_C57BL6NJ_G0033017.1 mouse_genomes_project 7 104803653 104807043 - MGP_C57BL6NJ_P0085631 Capn5 protein_coding protein_coding MGP_C57BL6NJ_T0083250.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28978262 29019670 - protein_coding retained_intron MGP_C57BL6NJ_T0083251.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28978398 29019719 - MGP_C57BL6NJ_P0083251 protein_coding protein_coding MGP_C57BL6NJ_T0083252.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28978400 29019677 - protein_coding retained_intron MGP_C57BL6NJ_T0083253.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28978404 29019670 - MGP_C57BL6NJ_P0083253 protein_coding protein_coding MGP_C57BL6NJ_T0083254.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28978451 29016585 - MGP_C57BL6NJ_P0083254 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083255.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28988850 29019668 - protein_coding retained_intron MGP_C57BL6NJ_T0083256.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28988985 29019721 - MGP_C57BL6NJ_P0083256 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083257.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28993310 29019689 - protein_coding retained_intron MGP_C57BL6NJ_T0083258.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 28993310 29006178 - protein_coding processed_transcript MGP_C57BL6NJ_T0083259.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 29000196 29017181 - MGP_C57BL6NJ_P0083259 protein_coding protein_coding MGP_C57BL6NJ_T0083260.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 29000359 29016935 - protein_coding retained_intron MGP_C57BL6NJ_T0083261.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 29000451 29016399 - protein_coding retained_intron MGP_C57BL6NJ_T0083262.1 MGP_C57BL6NJ_G0032426.1 mouse_genomes_project 7 29009794 29019706 - protein_coding processed_transcript MGP_C57BL6NJ_T0002403.1 MGP_C57BL6NJ_G0002292.1 mouse_genomes_project 7 80299862 80301493 + TEC TEC MGP_C57BL6NJ_T0103318.1 MGP_C57BL6NJ_G0041111.1 mouse_genomes_project 7 1197813 1214266 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082187.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12797840 13869434 + MGP_C57BL6NJ_P0082187 protein_coding protein_coding MGP_C57BL6NJ_T0082188.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12797965 13869069 + MGP_C57BL6NJ_P0082188 protein_coding protein_coding MGP_C57BL6NJ_T0082189.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12797965 13869007 + MGP_C57BL6NJ_P0082189 protein_coding protein_coding MGP_C57BL6NJ_T0082190.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12798326 13868897 + MGP_C57BL6NJ_P0082190 protein_coding protein_coding MGP_C57BL6NJ_T0082191.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12830454 14101771 + MGP_C57BL6NJ_P0082191 protein_coding protein_coding MGP_C57BL6NJ_T0082192.1 MGP_C57BL6NJ_G0032130.1 mouse_genomes_project 7 12830563 13869522 + protein_coding retained_intron MGP_C57BL6NJ_T0016237.1 MGP_C57BL6NJ_G0014282.1 mouse_genomes_project 7 42760076 42760265 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086681.1 MGP_C57BL6NJ_G0033404.1 mouse_genomes_project 7 128254840 128273263 - MGP_C57BL6NJ_P0086681 Umod protein_coding protein_coding MGP_C57BL6NJ_T0011950.1 MGP_C57BL6NJ_G0010035.1 mouse_genomes_project 7 78345757 78346010 + Gm23020 misc_RNA misc_RNA MGP_C57BL6NJ_T0083378.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30167423 30209478 - MGP_C57BL6NJ_P0083378 Wdr62 protein_coding protein_coding MGP_C57BL6NJ_T0083379.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30167423 30209455 - MGP_C57BL6NJ_P0083379 Wdr62 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083380.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30167423 30191811 - MGP_C57BL6NJ_P0083380 Wdr62 protein_coding protein_coding MGP_C57BL6NJ_T0083381.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30167428 30168169 - Wdr62 protein_coding processed_transcript MGP_C57BL6NJ_T0083382.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30168982 30169564 - MGP_C57BL6NJ_P0083382 Wdr62 protein_coding protein_coding MGP_C57BL6NJ_T0083383.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30172717 30179150 - Wdr62 protein_coding retained_intron MGP_C57BL6NJ_T0083384.1 MGP_C57BL6NJ_G0032458.1 mouse_genomes_project 7 30177096 30177840 - Wdr62 protein_coding retained_intron MGP_C57BL6NJ_T0009064.1 MGP_C57BL6NJ_G0007319.1 mouse_genomes_project 7 54872803 54894730 - Gm29296 lincRNA lincRNA MGP_C57BL6NJ_T0103337.1 MGP_C57BL6NJ_G0041130.1 mouse_genomes_project 7 10012047 10014285 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011197.1 MGP_C57BL6NJ_G0009282.1 mouse_genomes_project 7 153269076 153269149 - Mir483 miRNA miRNA MGP_C57BL6NJ_T0086485.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 120999268 121241755 + MGP_C57BL6NJ_P0086485 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086486.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 120999305 121234970 + MGP_C57BL6NJ_P0086486 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086487.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 120999458 121171414 + Tead1 protein_coding retained_intron MGP_C57BL6NJ_T0086488.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121066607 121233640 + MGP_C57BL6NJ_P0086488 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086489.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121080886 121233640 + MGP_C57BL6NJ_P0086489 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086490.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121083869 121132501 + Tead1 protein_coding processed_transcript MGP_C57BL6NJ_T0086491.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121083920 121233640 + MGP_C57BL6NJ_P0086491 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086492.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121083965 121233640 + MGP_C57BL6NJ_P0086492 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086493.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121083965 121233640 + MGP_C57BL6NJ_P0086493 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086494.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121083965 121233640 + MGP_C57BL6NJ_P0086494 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086495.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121084018 121192912 + MGP_C57BL6NJ_P0086495 Tead1 protein_coding protein_coding MGP_C57BL6NJ_T0086496.1 MGP_C57BL6NJ_G0033365.1 mouse_genomes_project 7 121084028 121171393 + Tead1 protein_coding retained_intron MGP_C57BL6NJ_T0011171.1 MGP_C57BL6NJ_G0009256.1 mouse_genomes_project 7 108847711 108847807 + Gm22655 miRNA miRNA MGP_C57BL6NJ_T0002421.1 MGP_C57BL6NJ_G0002310.1 mouse_genomes_project 7 84953068 84954347 - TEC TEC MGP_C57BL6NJ_T0016188.1 MGP_C57BL6NJ_G0014233.1 mouse_genomes_project 7 30192426 30192825 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005372.1 MGP_C57BL6NJ_G0004565.1 mouse_genomes_project 7 46217433 46282402 - antisense antisense MGP_C57BL6NJ_T0088395.1 MGP_C57BL6NJ_G0033770.1 mouse_genomes_project 7 154283792 154306824 - MGP_C57BL6NJ_P0088395 Tnfrsf26 protein_coding protein_coding MGP_C57BL6NJ_T0084647.1 MGP_C57BL6NJ_G0032793.1 mouse_genomes_project 7 55152118 55156164 - MGP_C57BL6NJ_P0084647 1700015G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0084648.1 MGP_C57BL6NJ_G0032793.1 mouse_genomes_project 7 55152120 55156139 - MGP_C57BL6NJ_P0084648 1700015G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0084649.1 MGP_C57BL6NJ_G0032793.1 mouse_genomes_project 7 55152122 55156131 - MGP_C57BL6NJ_P0084649 1700015G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0084650.1 MGP_C57BL6NJ_G0032793.1 mouse_genomes_project 7 55152125 55156118 - MGP_C57BL6NJ_P0084650 1700015G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0103481.1 MGP_C57BL6NJ_G0041273.1 mouse_genomes_project 7 51160650 51232552 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002368.1 MGP_C57BL6NJ_G0002258.1 mouse_genomes_project 7 48991722 48992238 + TEC TEC MGP_C57BL6NJ_T0101899.1 MGP_C57BL6NJ_G0039945.1 mouse_genomes_project 7 128086206 128086332 - Gm23321 snoRNA snoRNA MGP_C57BL6NJ_T0086383.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118046085 118049005 - Dennd5a protein_coding retained_intron MGP_C57BL6NJ_T0086384.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118046085 118116661 - MGP_C57BL6NJ_P0086384 Dennd5a protein_coding protein_coding MGP_C57BL6NJ_T0086385.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118046085 118116731 - MGP_C57BL6NJ_P0086385 Dennd5a protein_coding protein_coding MGP_C57BL6NJ_T0086386.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118048685 118049862 - Dennd5a protein_coding retained_intron MGP_C57BL6NJ_T0086387.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118052726 118054119 - Dennd5a protein_coding retained_intron MGP_C57BL6NJ_T0086388.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118061668 118074644 - Dennd5a protein_coding retained_intron MGP_C57BL6NJ_T0086389.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118075223 118079994 - Dennd5a protein_coding processed_transcript MGP_C57BL6NJ_T0086390.1 MGP_C57BL6NJ_G0033344.1 mouse_genomes_project 7 118088870 118116584 - Dennd5a protein_coding processed_transcript MGP_C57BL6NJ_T0011114.1 MGP_C57BL6NJ_G0009199.1 mouse_genomes_project 7 30559395 30559453 + Mir3569 miRNA miRNA MGP_C57BL6NJ_T0085033.1 MGP_C57BL6NJ_G0032867.1 mouse_genomes_project 7 84162339 84180859 - MGP_C57BL6NJ_P0085033 Hapln3 protein_coding protein_coding MGP_C57BL6NJ_T0085034.1 MGP_C57BL6NJ_G0032867.1 mouse_genomes_project 7 84162975 84180836 - MGP_C57BL6NJ_P0085034 Hapln3 protein_coding protein_coding MGP_C57BL6NJ_T0085035.1 MGP_C57BL6NJ_G0032867.1 mouse_genomes_project 7 84164257 84180854 - MGP_C57BL6NJ_P0085035 Hapln3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085036.1 MGP_C57BL6NJ_G0032867.1 mouse_genomes_project 7 84168974 84178523 - Hapln3 protein_coding processed_transcript MGP_C57BL6NJ_T0098887.1 MGP_C57BL6NJ_G0036951.1 mouse_genomes_project 7 18862784 18863383 + pseudogene pseudogene MGP_C57BL6NJ_T0011182.1 MGP_C57BL6NJ_G0009267.1 mouse_genomes_project 7 136987375 136987466 + miRNA miRNA MGP_C57BL6NJ_T0085400.1 MGP_C57BL6NJ_G0032944.1 mouse_genomes_project 7 90570017 90591664 - MGP_C57BL6NJ_P0085400 Vmn2r65 protein_coding protein_coding MGP_C57BL6NJ_T0082059.1 MGP_C57BL6NJ_G0032082.1 mouse_genomes_project 7 10135115 10136042 + MGP_C57BL6NJ_P0082059 Vmn1r80 protein_coding protein_coding MGP_C57BL6NJ_T0018871.1 MGP_C57BL6NJ_G0016077.1 mouse_genomes_project 7 113630691 113832941 + processed_transcript processed_transcript MGP_C57BL6NJ_T0082143.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11232410 11252126 - MGP_C57BL6NJ_P0082143 6330408A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0082144.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11232410 11251587 - MGP_C57BL6NJ_P0082144 6330408A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0082145.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11232411 11252164 - MGP_C57BL6NJ_P0082145 6330408A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0082146.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11239169 11252164 - 6330408A02Rik protein_coding retained_intron MGP_C57BL6NJ_T0082147.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11246690 11252113 - 6330408A02Rik protein_coding retained_intron MGP_C57BL6NJ_T0082148.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11246799 11251865 - 6330408A02Rik protein_coding retained_intron MGP_C57BL6NJ_T0082149.1 MGP_C57BL6NJ_G0032113.1 mouse_genomes_project 7 11250722 11252105 - MGP_C57BL6NJ_P0082149 6330408A02Rik protein_coding protein_coding MGP_C57BL6NJ_T0087114.1 MGP_C57BL6NJ_G0033492.1 mouse_genomes_project 7 136174239 136178317 + MGP_C57BL6NJ_P0087114 Tbx6 protein_coding protein_coding MGP_C57BL6NJ_T0087115.1 MGP_C57BL6NJ_G0033492.1 mouse_genomes_project 7 136174239 136178116 + MGP_C57BL6NJ_P0087115 Tbx6 protein_coding protein_coding MGP_C57BL6NJ_T0101904.1 MGP_C57BL6NJ_G0039950.1 mouse_genomes_project 7 145265546 145265679 - Gm24581 snoRNA snoRNA MGP_C57BL6NJ_T0081978.1 MGP_C57BL6NJ_G0032038.1 mouse_genomes_project 7 3341560 3391857 - MGP_C57BL6NJ_P0081978 Zfp787 protein_coding protein_coding MGP_C57BL6NJ_T0084274.1 MGP_C57BL6NJ_G0032690.1 mouse_genomes_project 7 47689859 47690703 + MGP_C57BL6NJ_P0084274 Pth2 protein_coding protein_coding MGP_C57BL6NJ_T0085567.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104052206 104060377 + MGP_C57BL6NJ_P0085567 Kctd14 protein_coding protein_coding MGP_C57BL6NJ_T0085568.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104054087 104060372 + MGP_C57BL6NJ_P0085568 Kctd14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085569.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104054087 104060375 + MGP_C57BL6NJ_P0085569 Kctd14 protein_coding protein_coding MGP_C57BL6NJ_T0085570.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104054087 104060375 + MGP_C57BL6NJ_P0085570 Kctd14 protein_coding protein_coding MGP_C57BL6NJ_T0085571.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104054087 104059538 + MGP_C57BL6NJ_P0085571 Kctd14 protein_coding protein_coding MGP_C57BL6NJ_T0085572.1 MGP_C57BL6NJ_G0033008.1 mouse_genomes_project 7 104054105 104060374 + MGP_C57BL6NJ_P0085572 Kctd14 protein_coding protein_coding MGP_C57BL6NJ_T0086397.1 MGP_C57BL6NJ_G0033346.1 mouse_genomes_project 7 118182643 118222893 + MGP_C57BL6NJ_P0086397 Ipo7 protein_coding protein_coding MGP_C57BL6NJ_T0086312.1 MGP_C57BL6NJ_G0033307.1 mouse_genomes_project 7 116243343 116257019 - MGP_C57BL6NJ_P0086312 Olfr487 protein_coding protein_coding MGP_C57BL6NJ_T0085379.1 MGP_C57BL6NJ_G0032935.1 mouse_genomes_project 7 89373400 89377830 - MGP_C57BL6NJ_P0085379 Mesdc1 protein_coding protein_coding MGP_C57BL6NJ_T0086001.1 MGP_C57BL6NJ_G0033114.1 mouse_genomes_project 7 109928471 109929413 + MGP_C57BL6NJ_P0086001 Olfr568 protein_coding protein_coding MGP_C57BL6NJ_T0085807.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995306 108177796 + MGP_C57BL6NJ_P0085807 Fchsd2 protein_coding protein_coding MGP_C57BL6NJ_T0085808.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995307 108093917 + Fchsd2 protein_coding processed_transcript MGP_C57BL6NJ_T0085809.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995312 108177819 + MGP_C57BL6NJ_P0085809 Fchsd2 protein_coding protein_coding MGP_C57BL6NJ_T0085810.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995336 108090968 + Fchsd2 protein_coding retained_intron MGP_C57BL6NJ_T0085811.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995411 108081778 + Fchsd2 protein_coding processed_transcript MGP_C57BL6NJ_T0085812.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 107995413 108027002 + Fchsd2 protein_coding retained_intron MGP_C57BL6NJ_T0085813.1 MGP_C57BL6NJ_G0033064.1 mouse_genomes_project 7 108134826 108147182 + Fchsd2 protein_coding retained_intron MGP_C57BL6NJ_T0088099.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151876191 151901175 + MGP_C57BL6NJ_P0088099 Eps8l2 protein_coding protein_coding MGP_C57BL6NJ_T0088100.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151876267 151901175 + Eps8l2 protein_coding retained_intron MGP_C57BL6NJ_T0088101.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151876298 151892526 + Eps8l2 protein_coding processed_transcript MGP_C57BL6NJ_T0088102.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151876315 151892524 + Eps8l2 protein_coding retained_intron MGP_C57BL6NJ_T0088103.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151876317 151880302 + MGP_C57BL6NJ_P0088103 Eps8l2 protein_coding protein_coding MGP_C57BL6NJ_T0088104.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151879967 151892661 + Eps8l2 protein_coding retained_intron MGP_C57BL6NJ_T0088105.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151896128 151899570 + Eps8l2 protein_coding retained_intron MGP_C57BL6NJ_T0088106.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151896335 151899889 + Eps8l2 protein_coding processed_transcript MGP_C57BL6NJ_T0088107.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151898400 151899887 + Eps8l2 protein_coding processed_transcript MGP_C57BL6NJ_T0088108.1 MGP_C57BL6NJ_G0033719.1 mouse_genomes_project 7 151899691 151900822 + Eps8l2 protein_coding processed_transcript MGP_C57BL6NJ_T0088055.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745046 151747845 + MGP_C57BL6NJ_P0088055 Rassf7 protein_coding protein_coding MGP_C57BL6NJ_T0088056.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745061 151747187 + Rassf7 protein_coding processed_transcript MGP_C57BL6NJ_T0088057.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745085 151746700 + Rassf7 protein_coding processed_transcript MGP_C57BL6NJ_T0088058.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745164 151746665 + MGP_C57BL6NJ_P0088058 Rassf7 protein_coding protein_coding MGP_C57BL6NJ_T0088059.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745389 151746659 + MGP_C57BL6NJ_P0088059 Rassf7 protein_coding protein_coding MGP_C57BL6NJ_T0088060.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745821 151746792 + MGP_C57BL6NJ_P0088060 Rassf7 protein_coding protein_coding MGP_C57BL6NJ_T0088061.1 MGP_C57BL6NJ_G0033711.1 mouse_genomes_project 7 151745886 151746900 + MGP_C57BL6NJ_P0088061 Rassf7 protein_coding protein_coding MGP_C57BL6NJ_T0087148.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254265 136256375 + MGP_C57BL6NJ_P0087148 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087149.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254402 136259555 + MGP_C57BL6NJ_P0087149 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087150.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254487 136255602 + Doc2a protein_coding processed_transcript MGP_C57BL6NJ_T0087151.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254547 136255542 + MGP_C57BL6NJ_P0087151 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087152.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254575 136258189 + MGP_C57BL6NJ_P0087152 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087153.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254776 136255686 + MGP_C57BL6NJ_P0087153 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087154.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136254811 136255685 + MGP_C57BL6NJ_P0087154 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087155.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136255104 136256610 + MGP_C57BL6NJ_P0087155 Doc2a protein_coding protein_coding MGP_C57BL6NJ_T0087156.1 MGP_C57BL6NJ_G0033497.1 mouse_genomes_project 7 136255646 136258886 + MGP_C57BL6NJ_P0087156 Doc2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083332.1 MGP_C57BL6NJ_G0032444.1 mouse_genomes_project 7 29866283 29917746 + MGP_C57BL6NJ_P0083332 Zfp568 protein_coding protein_coding MGP_C57BL6NJ_T0083333.1 MGP_C57BL6NJ_G0032444.1 mouse_genomes_project 7 29867627 29920917 + MGP_C57BL6NJ_P0083333 Zfp568 protein_coding protein_coding MGP_C57BL6NJ_T0083334.1 MGP_C57BL6NJ_G0032444.1 mouse_genomes_project 7 29870101 29916282 + MGP_C57BL6NJ_P0083334 Zfp568 protein_coding protein_coding MGP_C57BL6NJ_T0083335.1 MGP_C57BL6NJ_G0032444.1 mouse_genomes_project 7 29870101 29916282 + MGP_C57BL6NJ_P0083335 Zfp568 protein_coding protein_coding MGP_C57BL6NJ_T0082116.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10962418 10969386 + MGP_C57BL6NJ_P0082116 Trim28 protein_coding protein_coding MGP_C57BL6NJ_T0082117.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10965967 10967475 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082118.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10966179 10966853 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082119.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10966371 10967950 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082120.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10966755 10967716 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082121.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10967230 10968277 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082122.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10967441 10968346 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082123.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10968054 10968698 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0082124.1 MGP_C57BL6NJ_G0032104.1 mouse_genomes_project 7 10968722 10969383 + Trim28 protein_coding retained_intron MGP_C57BL6NJ_T0087627.1 MGP_C57BL6NJ_G0033584.1 mouse_genomes_project 7 140108938 140251749 - MGP_C57BL6NJ_P0087627 Ate1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087628.1 MGP_C57BL6NJ_G0033584.1 mouse_genomes_project 7 140108978 140251827 - MGP_C57BL6NJ_P0087628 Ate1 protein_coding protein_coding MGP_C57BL6NJ_T0087629.1 MGP_C57BL6NJ_G0033584.1 mouse_genomes_project 7 140108978 140251818 - MGP_C57BL6NJ_P0087629 Ate1 protein_coding protein_coding MGP_C57BL6NJ_T0087630.1 MGP_C57BL6NJ_G0033584.1 mouse_genomes_project 7 140112010 140252249 - MGP_C57BL6NJ_P0087630 Ate1 protein_coding protein_coding MGP_C57BL6NJ_T0087631.1 MGP_C57BL6NJ_G0033584.1 mouse_genomes_project 7 140112010 140252249 - MGP_C57BL6NJ_P0087631 Ate1 protein_coding protein_coding MGP_C57BL6NJ_T0082979.1 MGP_C57BL6NJ_G0032356.1 mouse_genomes_project 7 26805605 26827462 - MGP_C57BL6NJ_P0082979 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0081797.1 MGP_C57BL6NJ_G0031982.1 mouse_genomes_project 7 1103205 1105665 - MGP_C57BL6NJ_P0081797 Leng9 protein_coding protein_coding MGP_C57BL6NJ_T0087395.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137267842 137273014 + MGP_C57BL6NJ_P0087395 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087396.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137268500 137292341 + MGP_C57BL6NJ_P0087396 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087397.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137269069 137273017 + MGP_C57BL6NJ_P0087397 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087398.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137269085 137292890 + MGP_C57BL6NJ_P0087398 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087399.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137270074 137292342 + MGP_C57BL6NJ_P0087399 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087400.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137271446 137292141 + MGP_C57BL6NJ_P0087400 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0087401.1 MGP_C57BL6NJ_G0033544.1 mouse_genomes_project 7 137271573 137292897 + MGP_C57BL6NJ_P0087401 Fbxl19 protein_coding protein_coding MGP_C57BL6NJ_T0009002.1 MGP_C57BL6NJ_G0007270.1 mouse_genomes_project 7 25148013 25155103 + lincRNA lincRNA MGP_C57BL6NJ_T0084270.1 MGP_C57BL6NJ_G0032687.1 mouse_genomes_project 7 47660707 47666372 + MGP_C57BL6NJ_P0084270 Pih1d1 protein_coding protein_coding MGP_C57BL6NJ_T0084271.1 MGP_C57BL6NJ_G0032687.1 mouse_genomes_project 7 47662244 47666372 + MGP_C57BL6NJ_P0084271 Pih1d1 protein_coding protein_coding MGP_C57BL6NJ_T0100625.1 MGP_C57BL6NJ_G0038671.1 mouse_genomes_project 7 137620409 137620565 - Gm22809 snRNA snRNA MGP_C57BL6NJ_T0088201.1 MGP_C57BL6NJ_G0033733.1 mouse_genomes_project 7 152186230 152216080 - MGP_C57BL6NJ_P0088201 protein_coding protein_coding MGP_C57BL6NJ_T0088202.1 MGP_C57BL6NJ_G0033733.1 mouse_genomes_project 7 152188106 152216080 - MGP_C57BL6NJ_P0088202 protein_coding protein_coding MGP_C57BL6NJ_T0088203.1 MGP_C57BL6NJ_G0033733.1 mouse_genomes_project 7 152188183 152216069 - MGP_C57BL6NJ_P0088203 protein_coding protein_coding MGP_C57BL6NJ_T0082810.1 MGP_C57BL6NJ_G0032310.1 mouse_genomes_project 7 24556806 24559548 + Tmem145 protein_coding retained_intron MGP_C57BL6NJ_T0082811.1 MGP_C57BL6NJ_G0032310.1 mouse_genomes_project 7 24556808 24567777 + MGP_C57BL6NJ_P0082811 Tmem145 protein_coding protein_coding MGP_C57BL6NJ_T0082812.1 MGP_C57BL6NJ_G0032310.1 mouse_genomes_project 7 24556808 24567790 + MGP_C57BL6NJ_P0082812 Tmem145 protein_coding protein_coding MGP_C57BL6NJ_T0082813.1 MGP_C57BL6NJ_G0032310.1 mouse_genomes_project 7 24566634 24567787 + Tmem145 protein_coding retained_intron MGP_C57BL6NJ_T0009088.1 MGP_C57BL6NJ_G0007335.1 mouse_genomes_project 7 72593100 72607631 - Gm16158 lincRNA lincRNA MGP_C57BL6NJ_T0009089.1 MGP_C57BL6NJ_G0007335.1 mouse_genomes_project 7 72593100 72607612 - Gm16158 lincRNA lincRNA MGP_C57BL6NJ_T0085218.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85596524 85604259 - Furin protein_coding retained_intron MGP_C57BL6NJ_T0085219.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85597132 85610689 - MGP_C57BL6NJ_P0085219 Furin protein_coding protein_coding MGP_C57BL6NJ_T0085220.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85597132 85615095 - MGP_C57BL6NJ_P0085220 Furin protein_coding protein_coding MGP_C57BL6NJ_T0085221.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85597135 85609634 - MGP_C57BL6NJ_P0085221 Furin protein_coding protein_coding MGP_C57BL6NJ_T0085222.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85603905 85610504 - MGP_C57BL6NJ_P0085222 Furin protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085223.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85604215 85607396 - Furin protein_coding retained_intron MGP_C57BL6NJ_T0085224.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85606520 85615100 - MGP_C57BL6NJ_P0085224 Furin protein_coding protein_coding MGP_C57BL6NJ_T0085225.1 MGP_C57BL6NJ_G0032898.1 mouse_genomes_project 7 85606567 85612986 - MGP_C57BL6NJ_P0085225 Furin protein_coding protein_coding MGP_C57BL6NJ_T0016247.1 MGP_C57BL6NJ_G0014292.1 mouse_genomes_project 7 43525043 43525743 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086756.1 MGP_C57BL6NJ_G0033426.1 mouse_genomes_project 7 129616303 129678170 + MGP_C57BL6NJ_P0086756 BC030336 protein_coding protein_coding MGP_C57BL6NJ_T0086309.1 MGP_C57BL6NJ_G0033304.1 mouse_genomes_project 7 116097199 116098171 - MGP_C57BL6NJ_P0086309 Olfr482 protein_coding protein_coding MGP_C57BL6NJ_T0083150.1 MGP_C57BL6NJ_G0032404.1 mouse_genomes_project 7 28426847 28469929 + MGP_C57BL6NJ_P0083150 Fbxo17 protein_coding protein_coding MGP_C57BL6NJ_T0083151.1 MGP_C57BL6NJ_G0032404.1 mouse_genomes_project 7 28426875 28469923 + MGP_C57BL6NJ_P0083151 Fbxo17 protein_coding protein_coding MGP_C57BL6NJ_T0083152.1 MGP_C57BL6NJ_G0032404.1 mouse_genomes_project 7 28426899 28449226 + Fbxo17 protein_coding retained_intron MGP_C57BL6NJ_T0083153.1 MGP_C57BL6NJ_G0032404.1 mouse_genomes_project 7 28426916 28469929 + MGP_C57BL6NJ_P0083153 Fbxo17 protein_coding protein_coding MGP_C57BL6NJ_T0083154.1 MGP_C57BL6NJ_G0032404.1 mouse_genomes_project 7 28463136 28469267 + MGP_C57BL6NJ_P0083154 Fbxo17 protein_coding protein_coding MGP_C57BL6NJ_T0016394.1 MGP_C57BL6NJ_G0014439.1 mouse_genomes_project 7 152901950 152902403 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085716.1 MGP_C57BL6NJ_G0033042.1 mouse_genomes_project 7 106613181 106676012 + MGP_C57BL6NJ_P0085716 Xrra1 protein_coding protein_coding MGP_C57BL6NJ_T0083896.1 MGP_C57BL6NJ_G0032569.1 mouse_genomes_project 7 41071877 41094088 + MGP_C57BL6NJ_P0083896 Zfp619 protein_coding protein_coding MGP_C57BL6NJ_T0083244.1 MGP_C57BL6NJ_G0032423.1 mouse_genomes_project 7 28964672 28968386 + MGP_C57BL6NJ_P0083244 Ggn protein_coding protein_coding MGP_C57BL6NJ_T0083245.1 MGP_C57BL6NJ_G0032423.1 mouse_genomes_project 7 28964842 28968365 + MGP_C57BL6NJ_P0083245 Ggn protein_coding protein_coding MGP_C57BL6NJ_T0085416.1 MGP_C57BL6NJ_G0032959.1 mouse_genomes_project 7 92187094 92188096 - MGP_C57BL6NJ_P0085416 Olfr304 protein_coding protein_coding MGP_C57BL6NJ_T0085939.1 MGP_C57BL6NJ_G0033084.1 mouse_genomes_project 7 109078510 109091682 + MGP_C57BL6NJ_P0085939 Trpc2 protein_coding protein_coding MGP_C57BL6NJ_T0086467.1 MGP_C57BL6NJ_G0033361.1 mouse_genomes_project 7 120408163 120459329 - MGP_C57BL6NJ_P0086467 Dkk3 protein_coding protein_coding MGP_C57BL6NJ_T0098895.1 MGP_C57BL6NJ_G0036959.1 mouse_genomes_project 7 116359088 116360034 - pseudogene pseudogene MGP_C57BL6NJ_T0082803.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24545595 24548426 - MGP_C57BL6NJ_P0082803 Pafah1b3 protein_coding protein_coding MGP_C57BL6NJ_T0082804.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24545603 24547257 - Pafah1b3 protein_coding retained_intron MGP_C57BL6NJ_T0082805.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24545913 24548437 - MGP_C57BL6NJ_P0082805 Pafah1b3 protein_coding protein_coding MGP_C57BL6NJ_T0082806.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24546520 24548492 - MGP_C57BL6NJ_P0082806 Pafah1b3 protein_coding protein_coding MGP_C57BL6NJ_T0082807.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24547174 24548476 - Pafah1b3 protein_coding retained_intron MGP_C57BL6NJ_T0082808.1 MGP_C57BL6NJ_G0032308.1 mouse_genomes_project 7 24547428 24548489 - Pafah1b3 protein_coding processed_transcript MGP_C57BL6NJ_T0084651.1 MGP_C57BL6NJ_G0032794.1 mouse_genomes_project 7 58190808 58610980 + Luzp2 protein_coding retained_intron MGP_C57BL6NJ_T0084652.1 MGP_C57BL6NJ_G0032794.1 mouse_genomes_project 7 58190925 58630555 + MGP_C57BL6NJ_P0084652 Luzp2 protein_coding protein_coding MGP_C57BL6NJ_T0082458.1 MGP_C57BL6NJ_G0032212.1 mouse_genomes_project 7 18061244 18073002 + MGP_C57BL6NJ_P0082458 Gpr4 protein_coding protein_coding MGP_C57BL6NJ_T0082893.1 MGP_C57BL6NJ_G0032332.1 mouse_genomes_project 7 25719556 25753221 - MGP_C57BL6NJ_P0082893 Nlrp9c protein_coding protein_coding MGP_C57BL6NJ_T0082894.1 MGP_C57BL6NJ_G0032332.1 mouse_genomes_project 7 25725674 25753226 - MGP_C57BL6NJ_P0082894 Nlrp9c protein_coding protein_coding MGP_C57BL6NJ_T0082895.1 MGP_C57BL6NJ_G0032332.1 mouse_genomes_project 7 25735298 25763417 - Nlrp9c protein_coding retained_intron MGP_C57BL6NJ_T0082896.1 MGP_C57BL6NJ_G0032332.1 mouse_genomes_project 7 25735298 25763413 - Nlrp9c protein_coding processed_transcript MGP_C57BL6NJ_T0082897.1 MGP_C57BL6NJ_G0032332.1 mouse_genomes_project 7 25751250 25763417 - Nlrp9c protein_coding retained_intron MGP_C57BL6NJ_T0087948.1 MGP_C57BL6NJ_G0033672.1 mouse_genomes_project 7 150861916 150862846 - MGP_C57BL6NJ_P0087948 Olfr532 protein_coding protein_coding MGP_C57BL6NJ_T0002401.1 MGP_C57BL6NJ_G0002290.1 mouse_genomes_project 7 78642799 78644957 - TEC TEC MGP_C57BL6NJ_T0085096.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84824472 84843791 - MGP_C57BL6NJ_P0085096 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085097.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84830180 84843175 - MGP_C57BL6NJ_P0085097 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085098.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84830180 84843780 - MGP_C57BL6NJ_P0085098 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085099.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84831397 84832305 - MGP_C57BL6NJ_P0085099 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085100.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84835894 84840869 - MGP_C57BL6NJ_P0085100 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085101.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84837313 84843839 - MGP_C57BL6NJ_P0085101 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0085102.1 MGP_C57BL6NJ_G0032876.1 mouse_genomes_project 7 84839986 84843907 - MGP_C57BL6NJ_P0085102 Plin1 protein_coding protein_coding MGP_C57BL6NJ_T0086262.1 MGP_C57BL6NJ_G0033265.1 mouse_genomes_project 7 114638690 114639641 - MGP_C57BL6NJ_P0086262 Olfr699 protein_coding protein_coding MGP_C57BL6NJ_T0011195.1 MGP_C57BL6NJ_G0009280.1 mouse_genomes_project 7 152559110 152559173 + Mir3104 miRNA miRNA MGP_C57BL6NJ_T0009051.1 MGP_C57BL6NJ_G0007309.1 mouse_genomes_project 7 44771476 44827108 - lincRNA lincRNA MGP_C57BL6NJ_T0100616.1 MGP_C57BL6NJ_G0038662.1 mouse_genomes_project 7 128808495 128808596 + Gm25217 snRNA snRNA MGP_C57BL6NJ_T0102571.1 MGP_C57BL6NJ_G0040402.1 mouse_genomes_project 7 46222038 46240339 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102572.1 MGP_C57BL6NJ_G0040402.1 mouse_genomes_project 7 46239494 46240410 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0088407.1 MGP_C57BL6NJ_G0033775.1 mouse_genomes_project 7 154505103 154511166 - MGP_C57BL6NJ_P0088407 Mrgpre protein_coding protein_coding MGP_C57BL6NJ_T0011130.1 MGP_C57BL6NJ_G0009215.1 mouse_genomes_project 7 50565006 50565116 + Gm22427 miRNA miRNA MGP_C57BL6NJ_T0005348.1 MGP_C57BL6NJ_G0004549.1 mouse_genomes_project 7 30885070 30885671 + Gm29439 antisense antisense MGP_C57BL6NJ_T0016174.1 MGP_C57BL6NJ_G0014219.1 mouse_genomes_project 7 24906138 24906715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083833.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36810022 36817682 - MGP_C57BL6NJ_P0083833 Pdcd5 protein_coding protein_coding MGP_C57BL6NJ_T0083834.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36810052 36817370 - MGP_C57BL6NJ_P0083834 Pdcd5 protein_coding protein_coding MGP_C57BL6NJ_T0083835.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36810054 36813209 - Pdcd5 protein_coding retained_intron MGP_C57BL6NJ_T0083836.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36810056 36814020 - Pdcd5 protein_coding retained_intron MGP_C57BL6NJ_T0083837.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36813986 36817665 - Pdcd5 protein_coding retained_intron MGP_C57BL6NJ_T0083838.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36814352 36817641 - Pdcd5 protein_coding retained_intron MGP_C57BL6NJ_T0083839.1 MGP_C57BL6NJ_G0032558.1 mouse_genomes_project 7 36815832 36817627 - Pdcd5 protein_coding retained_intron MGP_C57BL6NJ_T0082114.1 MGP_C57BL6NJ_G0032103.1 mouse_genomes_project 7 10943789 10948651 - MGP_C57BL6NJ_P0082114 Zbtb45 protein_coding protein_coding MGP_C57BL6NJ_T0082115.1 MGP_C57BL6NJ_G0032103.1 mouse_genomes_project 7 10944495 10948629 - MGP_C57BL6NJ_P0082115 Zbtb45 protein_coding protein_coding MGP_C57BL6NJ_T0085459.1 MGP_C57BL6NJ_G0032978.1 mouse_genomes_project 7 95369627 95375372 + MGP_C57BL6NJ_P0085459 Fzd4 protein_coding protein_coding MGP_C57BL6NJ_T0086273.1 MGP_C57BL6NJ_G0033275.1 mouse_genomes_project 7 114825821 114831986 - MGP_C57BL6NJ_P0086273 Olfr710 protein_coding protein_coding MGP_C57BL6NJ_T0016204.1 MGP_C57BL6NJ_G0014249.1 mouse_genomes_project 7 32203417 32203853 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011185.1 MGP_C57BL6NJ_G0009270.1 mouse_genomes_project 7 138094414 138094539 - Gm24365 miRNA miRNA MGP_C57BL6NJ_T0103328.1 MGP_C57BL6NJ_G0041121.1 mouse_genomes_project 7 8367323 8368185 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084526.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49425357 49463109 - MGP_C57BL6NJ_P0084526 Hps5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084527.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49425357 49463458 - MGP_C57BL6NJ_P0084527 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084528.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49425357 49463430 - MGP_C57BL6NJ_P0084528 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084529.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49425363 49463312 - MGP_C57BL6NJ_P0084529 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084530.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49425870 49463109 - Hps5 protein_coding retained_intron MGP_C57BL6NJ_T0084531.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49426131 49435395 - Hps5 protein_coding processed_transcript MGP_C57BL6NJ_T0084532.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49427835 49441276 - MGP_C57BL6NJ_P0084532 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084533.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49431276 49438347 - MGP_C57BL6NJ_P0084533 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084534.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49433356 49434838 - Hps5 protein_coding retained_intron MGP_C57BL6NJ_T0084535.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49442198 49444782 - Hps5 protein_coding retained_intron MGP_C57BL6NJ_T0084536.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49452873 49463495 - MGP_C57BL6NJ_P0084536 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084537.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49455739 49463134 - MGP_C57BL6NJ_P0084537 Hps5 protein_coding protein_coding MGP_C57BL6NJ_T0084538.1 MGP_C57BL6NJ_G0032753.1 mouse_genomes_project 7 49456521 49458524 - Hps5 protein_coding processed_transcript MGP_C57BL6NJ_T0100581.1 MGP_C57BL6NJ_G0038627.1 mouse_genomes_project 7 41192040 41192151 + Gm26327 snRNA snRNA MGP_C57BL6NJ_T0084027.1 MGP_C57BL6NJ_G0032618.1 mouse_genomes_project 7 46063106 46069249 + MGP_C57BL6NJ_P0084027 Klk7 protein_coding protein_coding MGP_C57BL6NJ_T0002387.1 MGP_C57BL6NJ_G0002277.1 mouse_genomes_project 7 68225321 68228724 - TEC TEC MGP_C57BL6NJ_T0086055.1 MGP_C57BL6NJ_G0033166.1 mouse_genomes_project 7 111086108 111087044 - MGP_C57BL6NJ_P0086055 Olfr66 protein_coding protein_coding MGP_C57BL6NJ_T0083527.1 MGP_C57BL6NJ_G0032488.1 mouse_genomes_project 7 30646532 30647416 - MGP_C57BL6NJ_P0083527 Pmis2 protein_coding protein_coding MGP_C57BL6NJ_T0083528.1 MGP_C57BL6NJ_G0032488.1 mouse_genomes_project 7 30646567 30647411 - Pmis2 protein_coding processed_transcript MGP_C57BL6NJ_T0085414.1 MGP_C57BL6NJ_G0032957.1 mouse_genomes_project 7 92123079 92124091 - MGP_C57BL6NJ_P0085414 Olfr307 protein_coding protein_coding MGP_C57BL6NJ_T0083111.1 MGP_C57BL6NJ_G0032392.1 mouse_genomes_project 7 28031198 28033696 - MGP_C57BL6NJ_P0083111 Zfp36 protein_coding protein_coding MGP_C57BL6NJ_T0084683.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59312262 59340557 - MGP_C57BL6NJ_P0084683 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084684.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59312262 59340520 - MGP_C57BL6NJ_P0084684 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084685.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59312262 59340326 - MGP_C57BL6NJ_P0084685 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084686.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59312262 59340531 - MGP_C57BL6NJ_P0084686 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084687.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59314225 59340473 - Nipa2 protein_coding processed_transcript MGP_C57BL6NJ_T0084688.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59314490 59319043 - Nipa2 protein_coding retained_intron MGP_C57BL6NJ_T0084689.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59316782 59340557 - MGP_C57BL6NJ_P0084689 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084690.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59316830 59340511 - MGP_C57BL6NJ_P0084690 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0084691.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59322925 59340549 - Nipa2 protein_coding retained_intron MGP_C57BL6NJ_T0084692.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59323102 59325922 - Nipa2 protein_coding retained_intron MGP_C57BL6NJ_T0084693.1 MGP_C57BL6NJ_G0032798.1 mouse_genomes_project 7 59325584 59340254 - MGP_C57BL6NJ_P0084693 Nipa2 protein_coding protein_coding MGP_C57BL6NJ_T0016310.1 MGP_C57BL6NJ_G0014355.1 mouse_genomes_project 7 86529880 86530393 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083075.1 MGP_C57BL6NJ_G0032381.1 mouse_genomes_project 7 27762695 27805171 + MGP_C57BL6NJ_P0083075 9530053A07Rik protein_coding protein_coding MGP_C57BL6NJ_T0083076.1 MGP_C57BL6NJ_G0032381.1 mouse_genomes_project 7 27763045 27778899 + 9530053A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0083077.1 MGP_C57BL6NJ_G0032381.1 mouse_genomes_project 7 27763045 27776560 + 9530053A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0083078.1 MGP_C57BL6NJ_G0032381.1 mouse_genomes_project 7 27763045 27805155 + MGP_C57BL6NJ_P0083078 9530053A07Rik protein_coding protein_coding MGP_C57BL6NJ_T0100629.1 MGP_C57BL6NJ_G0038675.1 mouse_genomes_project 7 149519472 149519573 - Gm27975 snRNA snRNA MGP_C57BL6NJ_T0085419.1 MGP_C57BL6NJ_G0032962.1 mouse_genomes_project 7 92279028 92280021 + MGP_C57BL6NJ_P0085419 Olfr299 protein_coding protein_coding MGP_C57BL6NJ_T0084049.1 MGP_C57BL6NJ_G0032635.1 mouse_genomes_project 7 46604627 46608926 + MGP_C57BL6NJ_P0084049 Klk1b5 protein_coding protein_coding MGP_C57BL6NJ_T0087049.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135996635 135999063 - MGP_C57BL6NJ_P0087049 Nupr1 protein_coding protein_coding MGP_C57BL6NJ_T0087050.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135996638 136000397 - Nupr1 protein_coding retained_intron MGP_C57BL6NJ_T0087051.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135996664 135998731 - MGP_C57BL6NJ_P0087051 Nupr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087052.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135996828 135998862 - MGP_C57BL6NJ_P0087052 Nupr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087053.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135998334 136005683 - Nupr1 protein_coding processed_transcript MGP_C57BL6NJ_T0087054.1 MGP_C57BL6NJ_G0033483.1 mouse_genomes_project 7 135998334 135999403 - Nupr1 protein_coding processed_transcript MGP_C57BL6NJ_T0082018.1 MGP_C57BL6NJ_G0032053.1 mouse_genomes_project 7 3779233 3785827 - MGP_C57BL6NJ_P0082018 Olfr5 protein_coding protein_coding MGP_C57BL6NJ_T0085430.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93136521 93197137 + MGP_C57BL6NJ_P0085430 Nox4 protein_coding protein_coding MGP_C57BL6NJ_T0085431.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93200483 + Nox4 protein_coding retained_intron MGP_C57BL6NJ_T0085432.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93180117 + Nox4 protein_coding processed_transcript MGP_C57BL6NJ_T0085433.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93288156 + MGP_C57BL6NJ_P0085433 Nox4 protein_coding protein_coding MGP_C57BL6NJ_T0085434.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93291004 + MGP_C57BL6NJ_P0085434 Nox4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085435.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93284647 + MGP_C57BL6NJ_P0085435 Nox4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085436.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137341 93291004 + MGP_C57BL6NJ_P0085436 Nox4 protein_coding protein_coding MGP_C57BL6NJ_T0085437.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137504 93290634 + MGP_C57BL6NJ_P0085437 Nox4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085438.1 MGP_C57BL6NJ_G0032972.1 mouse_genomes_project 7 93137538 93288125 + MGP_C57BL6NJ_P0085438 Nox4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086765.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129789421 129862382 + MGP_C57BL6NJ_P0086765 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086766.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129790190 129859159 + MGP_C57BL6NJ_P0086766 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086767.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129790208 129806320 + MGP_C57BL6NJ_P0086767 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086768.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129798939 129853823 + MGP_C57BL6NJ_P0086768 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086769.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129798939 129832512 + MGP_C57BL6NJ_P0086769 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086770.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129798951 129858661 + MGP_C57BL6NJ_P0086770 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086771.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129826622 129832031 + Eef2k protein_coding retained_intron MGP_C57BL6NJ_T0086772.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129841855 129847504 + MGP_C57BL6NJ_P0086772 Eef2k protein_coding protein_coding MGP_C57BL6NJ_T0086773.1 MGP_C57BL6NJ_G0033428.1 mouse_genomes_project 7 129844024 129858743 + Eef2k protein_coding processed_transcript MGP_C57BL6NJ_T0083344.1 MGP_C57BL6NJ_G0032448.1 mouse_genomes_project 7 29975917 29990387 - MGP_C57BL6NJ_P0083344 Zfp566 protein_coding protein_coding MGP_C57BL6NJ_T0083345.1 MGP_C57BL6NJ_G0032448.1 mouse_genomes_project 7 29979538 29990323 - Zfp566 protein_coding retained_intron MGP_C57BL6NJ_T0085712.1 MGP_C57BL6NJ_G0033038.1 mouse_genomes_project 7 106466313 106467264 + MGP_C57BL6NJ_P0085712 Olfr520 protein_coding protein_coding MGP_C57BL6NJ_T0082824.1 MGP_C57BL6NJ_G0032314.1 mouse_genomes_project 7 24668870 24687331 - MGP_C57BL6NJ_P0082824 Cxcl17 protein_coding protein_coding MGP_C57BL6NJ_T0082825.1 MGP_C57BL6NJ_G0032314.1 mouse_genomes_project 7 24668870 24687331 - MGP_C57BL6NJ_P0082825 Cxcl17 protein_coding protein_coding MGP_C57BL6NJ_T0088283.1 MGP_C57BL6NJ_G0033752.1 mouse_genomes_project 7 153092584 153108273 - MGP_C57BL6NJ_P0088283 protein_coding protein_coding MGP_C57BL6NJ_T0088284.1 MGP_C57BL6NJ_G0033752.1 mouse_genomes_project 7 153094260 153098482 - protein_coding processed_transcript MGP_C57BL6NJ_T0086000.1 MGP_C57BL6NJ_G0033113.1 mouse_genomes_project 7 109889369 109891602 - MGP_C57BL6NJ_P0086000 Olfr566 protein_coding protein_coding MGP_C57BL6NJ_T0088088.1 MGP_C57BL6NJ_G0033716.1 mouse_genomes_project 7 151827195 151830189 + MGP_C57BL6NJ_P0088088 Drd4 protein_coding protein_coding MGP_C57BL6NJ_T0085285.1 MGP_C57BL6NJ_G0032908.1 mouse_genomes_project 7 86392695 86468955 + MGP_C57BL6NJ_P0085285 Slc28a1 protein_coding protein_coding MGP_C57BL6NJ_T0085286.1 MGP_C57BL6NJ_G0032908.1 mouse_genomes_project 7 86392746 86468955 + MGP_C57BL6NJ_P0085286 Slc28a1 protein_coding protein_coding MGP_C57BL6NJ_T0084252.1 MGP_C57BL6NJ_G0032680.1 mouse_genomes_project 7 47565542 47581529 + MGP_C57BL6NJ_P0084252 Nosip protein_coding protein_coding MGP_C57BL6NJ_T0084253.1 MGP_C57BL6NJ_G0032680.1 mouse_genomes_project 7 47565542 47581529 + MGP_C57BL6NJ_P0084253 Nosip protein_coding protein_coding MGP_C57BL6NJ_T0011132.1 MGP_C57BL6NJ_G0009217.1 mouse_genomes_project 7 57305730 57305838 - Gm27921 miRNA miRNA MGP_C57BL6NJ_T0085557.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103955194 103976621 + MGP_C57BL6NJ_P0085557 Alg8 protein_coding protein_coding MGP_C57BL6NJ_T0085558.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103970225 103976188 + Alg8 protein_coding retained_intron MGP_C57BL6NJ_T0085559.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103970482 103976522 + Alg8 protein_coding processed_transcript MGP_C57BL6NJ_T0085560.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103970810 103976085 + Alg8 protein_coding processed_transcript MGP_C57BL6NJ_T0085561.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103971630 103976246 + Alg8 protein_coding retained_intron MGP_C57BL6NJ_T0085562.1 MGP_C57BL6NJ_G0033005.1 mouse_genomes_project 7 103975213 103976329 + Alg8 protein_coding retained_intron MGP_C57BL6NJ_T0087211.1 MGP_C57BL6NJ_G0033506.1 mouse_genomes_project 7 136402001 136433129 - MGP_C57BL6NJ_P0087211 Mvp protein_coding protein_coding MGP_C57BL6NJ_T0087212.1 MGP_C57BL6NJ_G0033506.1 mouse_genomes_project 7 136415385 136428747 - MGP_C57BL6NJ_P0087212 Mvp protein_coding protein_coding MGP_C57BL6NJ_T0087214.1 MGP_C57BL6NJ_G0033506.1 mouse_genomes_project 7 136426610 136433058 - Mvp protein_coding retained_intron MGP_C57BL6NJ_T0011129.1 MGP_C57BL6NJ_G0009214.1 mouse_genomes_project 7 49789116 49789175 - Mir7056 miRNA miRNA MGP_C57BL6NJ_T0087205.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136391577 136395641 + MGP_C57BL6NJ_P0087205 Cdipt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087206.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136391599 136395643 + MGP_C57BL6NJ_P0087206 Cdipt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087207.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136391729 136394793 + MGP_C57BL6NJ_P0087207 Cdipt protein_coding protein_coding MGP_C57BL6NJ_T0087208.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136391871 136395179 + MGP_C57BL6NJ_P0087208 Cdipt protein_coding protein_coding MGP_C57BL6NJ_T0087209.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136391905 136395647 + MGP_C57BL6NJ_P0087209 Cdipt protein_coding protein_coding MGP_C57BL6NJ_T0087210.1 MGP_C57BL6NJ_G0033505.1 mouse_genomes_project 7 136393374 136394617 + Cdipt protein_coding retained_intron MGP_C57BL6NJ_T0009124.1 MGP_C57BL6NJ_G0007365.1 mouse_genomes_project 7 83853351 83853628 + 1700011D18Rik lincRNA lincRNA MGP_C57BL6NJ_T0087182.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136292997 136298567 - MGP_C57BL6NJ_P0087182 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087183.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293044 136304235 - MGP_C57BL6NJ_P0087183 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087184.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293046 136296114 - Tmem219 protein_coding retained_intron MGP_C57BL6NJ_T0087185.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293046 136337810 - MGP_C57BL6NJ_P0087185 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087186.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293046 136305064 - MGP_C57BL6NJ_P0087186 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087187.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293046 136305087 - MGP_C57BL6NJ_P0087187 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087188.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136293048 136303687 - MGP_C57BL6NJ_P0087188 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087189.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136295833 136337812 - MGP_C57BL6NJ_P0087189 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0087190.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136297791 136305092 - Tmem219 protein_coding retained_intron MGP_C57BL6NJ_T0087191.1 MGP_C57BL6NJ_G0033501.1 mouse_genomes_project 7 136298413 136337795 - MGP_C57BL6NJ_P0087191 Tmem219 protein_coding protein_coding MGP_C57BL6NJ_T0002352.1 MGP_C57BL6NJ_G0002242.1 mouse_genomes_project 7 38005403 38007789 + TEC TEC MGP_C57BL6NJ_T0081976.1 MGP_C57BL6NJ_G0032037.1 mouse_genomes_project 7 3256583 3319987 + MGP_C57BL6NJ_P0081976 Nlrp4e protein_coding protein_coding MGP_C57BL6NJ_T0081977.1 MGP_C57BL6NJ_G0032037.1 mouse_genomes_project 7 3256691 3319522 + MGP_C57BL6NJ_P0081977 Nlrp4e protein_coding protein_coding MGP_C57BL6NJ_T0103436.1 MGP_C57BL6NJ_G0041228.1 mouse_genomes_project 7 46240731 46602715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085009.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788373 83799826 + MGP_C57BL6NJ_P0085009 Mrps11 protein_coding protein_coding MGP_C57BL6NJ_T0085010.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788567 83796491 + Mrps11 protein_coding retained_intron MGP_C57BL6NJ_T0085011.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788609 83794668 + Mrps11 protein_coding retained_intron MGP_C57BL6NJ_T0085012.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788610 83799826 + MGP_C57BL6NJ_P0085012 Mrps11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085013.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788624 83796178 + Mrps11 protein_coding retained_intron MGP_C57BL6NJ_T0085014.1 MGP_C57BL6NJ_G0032862.1 mouse_genomes_project 7 83788625 83794560 + Mrps11 protein_coding retained_intron MGP_C57BL6NJ_T0085287.1 MGP_C57BL6NJ_G0032909.1 mouse_genomes_project 7 86521119 86657819 + MGP_C57BL6NJ_P0085287 Pde8a protein_coding protein_coding MGP_C57BL6NJ_T0085288.1 MGP_C57BL6NJ_G0032909.1 mouse_genomes_project 7 86613441 86637208 + Pde8a protein_coding processed_transcript MGP_C57BL6NJ_T0085289.1 MGP_C57BL6NJ_G0032909.1 mouse_genomes_project 7 86624422 86641354 + Pde8a protein_coding processed_transcript MGP_C57BL6NJ_T0016224.1 MGP_C57BL6NJ_G0014269.1 mouse_genomes_project 7 36612749 36615012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084956.1 MGP_C57BL6NJ_G0032853.1 mouse_genomes_project 7 78421863 78461735 + MGP_C57BL6NJ_P0084956 Fam174b protein_coding protein_coding MGP_C57BL6NJ_T0084957.1 MGP_C57BL6NJ_G0032853.1 mouse_genomes_project 7 78449730 78459973 + MGP_C57BL6NJ_P0084957 Fam174b protein_coding protein_coding MGP_C57BL6NJ_T0084958.1 MGP_C57BL6NJ_G0032853.1 mouse_genomes_project 7 78449794 78460834 + Fam174b protein_coding retained_intron MGP_C57BL6NJ_T0002415.1 MGP_C57BL6NJ_G0002304.1 mouse_genomes_project 7 84371160 84375062 + TEC TEC MGP_C57BL6NJ_T0088408.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154523431 154551978 - MGP_C57BL6NJ_P0088408 Nadsyn1 protein_coding protein_coding MGP_C57BL6NJ_T0088409.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154523697 154551924 - MGP_C57BL6NJ_P0088409 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088410.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154523716 154551979 - MGP_C57BL6NJ_P0088410 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088411.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154525696 154526689 - Nadsyn1 protein_coding retained_intron MGP_C57BL6NJ_T0088412.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154541914 154551955 - MGP_C57BL6NJ_P0088412 Nadsyn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088413.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154542437 154551885 - Nadsyn1 protein_coding retained_intron MGP_C57BL6NJ_T0088414.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154542575 154551942 - MGP_C57BL6NJ_P0088414 Nadsyn1 protein_coding protein_coding MGP_C57BL6NJ_T0088415.1 MGP_C57BL6NJ_G0033776.1 mouse_genomes_project 7 154544489 154551986 - Nadsyn1 protein_coding retained_intron MGP_C57BL6NJ_T0084212.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329398 47336405 + MGP_C57BL6NJ_P0084212 Pnkp protein_coding protein_coding MGP_C57BL6NJ_T0084213.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329410 47329765 + MGP_C57BL6NJ_P0084213 Pnkp protein_coding protein_coding MGP_C57BL6NJ_T0084214.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329418 47336747 + MGP_C57BL6NJ_P0084214 Pnkp protein_coding protein_coding MGP_C57BL6NJ_T0084215.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329426 47336411 + Pnkp protein_coding retained_intron MGP_C57BL6NJ_T0084216.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329432 47334179 + MGP_C57BL6NJ_P0084216 Pnkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084217.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329599 47335106 + MGP_C57BL6NJ_P0084217 Pnkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084218.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329601 47336404 + MGP_C57BL6NJ_P0084218 Pnkp protein_coding protein_coding MGP_C57BL6NJ_T0084219.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329607 47336405 + MGP_C57BL6NJ_P0084219 Pnkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084220.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329638 47336396 + MGP_C57BL6NJ_P0084220 Pnkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084221.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47329653 47336405 + MGP_C57BL6NJ_P0084221 Pnkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084222.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47333443 47336403 + Pnkp protein_coding retained_intron MGP_C57BL6NJ_T0084223.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47334177 47335124 + Pnkp protein_coding retained_intron MGP_C57BL6NJ_T0084224.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47335129 47336405 + MGP_C57BL6NJ_P0084224 Pnkp protein_coding non_stop_decay MGP_C57BL6NJ_T0084225.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47335268 47336403 + MGP_C57BL6NJ_P0084225 Pnkp protein_coding protein_coding MGP_C57BL6NJ_T0084226.1 MGP_C57BL6NJ_G0032665.1 mouse_genomes_project 7 47335451 47336425 + Pnkp protein_coding retained_intron MGP_C57BL6NJ_T0087413.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325270 137328616 + Hsd3b7 protein_coding retained_intron MGP_C57BL6NJ_T0087414.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325270 137328616 + Hsd3b7 protein_coding retained_intron MGP_C57BL6NJ_T0087415.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325280 137327212 + MGP_C57BL6NJ_P0087415 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0087416.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325280 137328616 + MGP_C57BL6NJ_P0087416 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0087417.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325302 137326836 + MGP_C57BL6NJ_P0087417 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0087418.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325308 137328015 + MGP_C57BL6NJ_P0087418 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0087419.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325312 137327084 + MGP_C57BL6NJ_P0087419 Hsd3b7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087420.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325313 137327037 + Hsd3b7 protein_coding retained_intron MGP_C57BL6NJ_T0087421.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325324 137326927 + Hsd3b7 protein_coding retained_intron MGP_C57BL6NJ_T0087422.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325337 137327141 + Hsd3b7 protein_coding retained_intron MGP_C57BL6NJ_T0087423.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325346 137326852 + MGP_C57BL6NJ_P0087423 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0087424.1 MGP_C57BL6NJ_G0033548.1 mouse_genomes_project 7 137325607 137326185 + MGP_C57BL6NJ_P0087424 Hsd3b7 protein_coding protein_coding MGP_C57BL6NJ_T0011087.1 MGP_C57BL6NJ_G0009172.1 mouse_genomes_project 7 1536073 1536183 - Gm23577 miRNA miRNA MGP_C57BL6NJ_T0005394.1 MGP_C57BL6NJ_G0004582.1 mouse_genomes_project 7 84064276 84099424 - Gm26633 antisense antisense MGP_C57BL6NJ_T0085948.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207509 109222364 + Pgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0085949.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207636 109226664 + MGP_C57BL6NJ_P0085949 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085950.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207663 109238785 + MGP_C57BL6NJ_P0085950 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085951.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207673 109226724 + MGP_C57BL6NJ_P0085951 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085952.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207825 109220121 + Pgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0085953.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109207836 109236679 + Pgap2 protein_coding retained_intron MGP_C57BL6NJ_T0085954.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221332 109236385 + MGP_C57BL6NJ_P0085954 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085955.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221524 109237446 + MGP_C57BL6NJ_P0085955 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085956.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221908 109238785 + MGP_C57BL6NJ_P0085956 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085957.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221925 109237444 + MGP_C57BL6NJ_P0085957 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085958.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221930 109237995 + MGP_C57BL6NJ_P0085958 Pgap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085959.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221933 109236451 + MGP_C57BL6NJ_P0085959 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085960.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221949 109237981 + MGP_C57BL6NJ_P0085960 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085961.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221951 109227390 + Pgap2 protein_coding retained_intron MGP_C57BL6NJ_T0085962.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221952 109237880 + Pgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0085963.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221955 109226633 + MGP_C57BL6NJ_P0085963 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085964.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221958 109236636 + Pgap2 protein_coding retained_intron MGP_C57BL6NJ_T0085965.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221964 109237838 + MGP_C57BL6NJ_P0085965 Pgap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085966.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221965 109237951 + MGP_C57BL6NJ_P0085966 Pgap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085967.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109221973 109238778 + Pgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0085968.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109222162 109236516 + MGP_C57BL6NJ_P0085968 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085969.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109226096 109236553 + MGP_C57BL6NJ_P0085969 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085970.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109226109 109237770 + MGP_C57BL6NJ_P0085970 Pgap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085971.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109230216 109238778 + MGP_C57BL6NJ_P0085971 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085972.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109236071 109237748 + MGP_C57BL6NJ_P0085972 Pgap2 protein_coding protein_coding MGP_C57BL6NJ_T0085973.1 MGP_C57BL6NJ_G0033089.1 mouse_genomes_project 7 109236120 109237872 + Pgap2 protein_coding retained_intron MGP_C57BL6NJ_T0011158.1 MGP_C57BL6NJ_G0009243.1 mouse_genomes_project 7 70525569 70525627 - Mir7057 miRNA miRNA MGP_C57BL6NJ_T0103491.1 MGP_C57BL6NJ_G0041283.1 mouse_genomes_project 7 90665894 90666114 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008985.1 MGP_C57BL6NJ_G0007256.1 mouse_genomes_project 7 10890944 10897092 + lincRNA lincRNA MGP_C57BL6NJ_T0082633.1 MGP_C57BL6NJ_G0032269.1 mouse_genomes_project 7 23290813 23302039 + MGP_C57BL6NJ_P0082633 Zfp108 protein_coding protein_coding MGP_C57BL6NJ_T0082634.1 MGP_C57BL6NJ_G0032269.1 mouse_genomes_project 7 23291059 23302109 + MGP_C57BL6NJ_P0082634 Zfp108 protein_coding protein_coding MGP_C57BL6NJ_T0082635.1 MGP_C57BL6NJ_G0032269.1 mouse_genomes_project 7 23293663 23301578 + MGP_C57BL6NJ_P0082635 Zfp108 protein_coding protein_coding MGP_C57BL6NJ_T0087903.1 MGP_C57BL6NJ_G0033654.1 mouse_genomes_project 7 150463240 150466173 - MGP_C57BL6NJ_P0087903 Msx3 protein_coding protein_coding MGP_C57BL6NJ_T0087904.1 MGP_C57BL6NJ_G0033654.1 mouse_genomes_project 7 150463457 150466172 - MGP_C57BL6NJ_P0087904 Msx3 protein_coding protein_coding MGP_C57BL6NJ_T0103520.1 MGP_C57BL6NJ_G0041312.1 mouse_genomes_project 7 92362032 92362729 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016364.1 MGP_C57BL6NJ_G0014409.1 mouse_genomes_project 7 131933180 131933507 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086527.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968686 122982308 - MGP_C57BL6NJ_P0086527 Cyp2r1 protein_coding protein_coding MGP_C57BL6NJ_T0086528.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968742 122982306 - MGP_C57BL6NJ_P0086528 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086529.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968753 122982298 - MGP_C57BL6NJ_P0086529 Cyp2r1 protein_coding protein_coding MGP_C57BL6NJ_T0086530.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968767 122973257 - Cyp2r1 protein_coding processed_transcript MGP_C57BL6NJ_T0086531.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968767 122973253 - MGP_C57BL6NJ_P0086531 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086532.1 MGP_C57BL6NJ_G0033377.1 mouse_genomes_project 7 122968769 122982298 - MGP_C57BL6NJ_P0086532 Cyp2r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087293.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136750349 136798477 + MGP_C57BL6NJ_P0087293 Itgal protein_coding protein_coding MGP_C57BL6NJ_T0087294.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136750380 136798478 + MGP_C57BL6NJ_P0087294 Itgal protein_coding protein_coding MGP_C57BL6NJ_T0087295.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136750404 136794631 + MGP_C57BL6NJ_P0087295 Itgal protein_coding protein_coding MGP_C57BL6NJ_T0087296.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136750499 136797068 + MGP_C57BL6NJ_P0087296 Itgal protein_coding protein_coding MGP_C57BL6NJ_T0087297.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136751519 136759623 + Itgal protein_coding processed_transcript MGP_C57BL6NJ_T0087298.1 MGP_C57BL6NJ_G0033525.1 mouse_genomes_project 7 136769420 136798477 + MGP_C57BL6NJ_P0087298 Itgal protein_coding protein_coding MGP_C57BL6NJ_T0081868.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1609694 1637229 - MGP_C57BL6NJ_P0081868 Ppp6r1 protein_coding protein_coding MGP_C57BL6NJ_T0081869.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1616409 1620558 - Ppp6r1 protein_coding retained_intron MGP_C57BL6NJ_T0081870.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1620952 1637200 - Ppp6r1 protein_coding retained_intron MGP_C57BL6NJ_T0081871.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1621690 1623679 - MGP_C57BL6NJ_P0081871 Ppp6r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081872.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1622531 1627800 - MGP_C57BL6NJ_P0081872 Ppp6r1 protein_coding protein_coding MGP_C57BL6NJ_T0081873.1 MGP_C57BL6NJ_G0031996.1 mouse_genomes_project 7 1623631 1637191 - MGP_C57BL6NJ_P0081873 Ppp6r1 protein_coding protein_coding MGP_C57BL6NJ_T0103446.1 MGP_C57BL6NJ_G0041238.1 mouse_genomes_project 7 46363792 46366744 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082586.1 MGP_C57BL6NJ_G0032248.1 mouse_genomes_project 7 18850466 18871919 - MGP_C57BL6NJ_P0082586 Pvr protein_coding protein_coding MGP_C57BL6NJ_T0082587.1 MGP_C57BL6NJ_G0032248.1 mouse_genomes_project 7 18851993 18861844 - Pvr protein_coding retained_intron MGP_C57BL6NJ_T0082588.1 MGP_C57BL6NJ_G0032248.1 mouse_genomes_project 7 18866531 18871872 - Pvr protein_coding retained_intron MGP_C57BL6NJ_T0082589.1 MGP_C57BL6NJ_G0032248.1 mouse_genomes_project 7 18868035 18871872 - Pvr protein_coding retained_intron MGP_C57BL6NJ_T0084555.1 MGP_C57BL6NJ_G0032757.1 mouse_genomes_project 7 49564049 49597893 - MGP_C57BL6NJ_P0084555 protein_coding protein_coding MGP_C57BL6NJ_T0084556.1 MGP_C57BL6NJ_G0032757.1 mouse_genomes_project 7 49564127 49567585 - protein_coding processed_transcript MGP_C57BL6NJ_T0084557.1 MGP_C57BL6NJ_G0032757.1 mouse_genomes_project 7 49577494 49592342 - MGP_C57BL6NJ_P0084557 protein_coding protein_coding MGP_C57BL6NJ_T0084558.1 MGP_C57BL6NJ_G0032757.1 mouse_genomes_project 7 49583058 49585515 - protein_coding retained_intron MGP_C57BL6NJ_T0084559.1 MGP_C57BL6NJ_G0032757.1 mouse_genomes_project 7 49583520 49597861 - MGP_C57BL6NJ_P0084559 protein_coding protein_coding MGP_C57BL6NJ_T0082061.1 MGP_C57BL6NJ_G0032084.1 mouse_genomes_project 7 10251791 10252709 + MGP_C57BL6NJ_P0082061 Vmn1r82 protein_coding protein_coding MGP_C57BL6NJ_T0082062.1 MGP_C57BL6NJ_G0032084.1 mouse_genomes_project 7 10251794 10252709 + MGP_C57BL6NJ_P0082062 Vmn1r82 protein_coding protein_coding MGP_C57BL6NJ_T0087516.1 MGP_C57BL6NJ_G0033570.1 mouse_genomes_project 7 137819600 137820355 + Armc5 protein_coding processed_transcript MGP_C57BL6NJ_T0087517.1 MGP_C57BL6NJ_G0033570.1 mouse_genomes_project 7 137819615 137829261 + MGP_C57BL6NJ_P0087517 Armc5 protein_coding protein_coding MGP_C57BL6NJ_T0011166.1 MGP_C57BL6NJ_G0009251.1 mouse_genomes_project 7 102775972 102776081 + Mir708 miRNA miRNA MGP_C57BL6NJ_T0103448.1 MGP_C57BL6NJ_G0041240.1 mouse_genomes_project 7 46396397 46400397 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087236.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136447342 136448571 - MGP_C57BL6NJ_P0087236 Kif22 protein_coding protein_coding MGP_C57BL6NJ_T0087237.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136447344 136461867 - MGP_C57BL6NJ_P0087237 Kif22 protein_coding protein_coding MGP_C57BL6NJ_T0087238.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136447345 136447730 - Kif22 protein_coding retained_intron MGP_C57BL6NJ_T0087239.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136448717 136452318 - Kif22 protein_coding retained_intron MGP_C57BL6NJ_T0087240.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136451841 136461805 - Kif22 protein_coding retained_intron MGP_C57BL6NJ_T0087241.1 MGP_C57BL6NJ_G0033512.1 mouse_genomes_project 7 136453198 136461802 - MGP_C57BL6NJ_P0087241 Kif22 protein_coding protein_coding MGP_C57BL6NJ_T0103476.1 MGP_C57BL6NJ_G0041268.1 mouse_genomes_project 7 50751813 50752726 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087861.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149748492 149946896 + MGP_C57BL6NJ_P0087861 Inpp5a protein_coding protein_coding MGP_C57BL6NJ_T0087862.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149748493 149946896 + MGP_C57BL6NJ_P0087862 Inpp5a protein_coding protein_coding MGP_C57BL6NJ_T0087863.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149759875 149946469 + MGP_C57BL6NJ_P0087863 Inpp5a protein_coding protein_coding MGP_C57BL6NJ_T0087864.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149815382 149873900 + Inpp5a protein_coding processed_transcript MGP_C57BL6NJ_T0087865.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149842679 149860393 + Inpp5a protein_coding processed_transcript MGP_C57BL6NJ_T0087866.1 MGP_C57BL6NJ_G0033644.1 mouse_genomes_project 7 149886281 149942453 + Inpp5a protein_coding processed_transcript MGP_C57BL6NJ_T0100580.1 MGP_C57BL6NJ_G0038626.1 mouse_genomes_project 7 39549274 39549332 - Gm22203 snRNA snRNA MGP_C57BL6NJ_T0100576.1 MGP_C57BL6NJ_G0038622.1 mouse_genomes_project 7 18340837 18340976 - Gm23099 snRNA snRNA MGP_C57BL6NJ_T0086282.1 MGP_C57BL6NJ_G0033284.1 mouse_genomes_project 7 115048110 115049214 + MGP_C57BL6NJ_P0086282 Olfr716 protein_coding protein_coding MGP_C57BL6NJ_T0009154.1 MGP_C57BL6NJ_G0007379.1 mouse_genomes_project 7 98872220 98879734 + Gm26944 lincRNA lincRNA MGP_C57BL6NJ_T0016349.1 MGP_C57BL6NJ_G0014394.1 mouse_genomes_project 7 115102749 115104196 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016149.1 MGP_C57BL6NJ_G0014194.1 mouse_genomes_project 7 12415852 12419576 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099517.1 MGP_C57BL6NJ_G0037569.1 mouse_genomes_project 7 132089101 132089685 + Gm20274 sense_intronic sense_intronic MGP_C57BL6NJ_T0103462.1 MGP_C57BL6NJ_G0041254.1 mouse_genomes_project 7 50283995 50284959 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086921.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134937884 135006377 - MGP_C57BL6NJ_P0086921 Gtf3c1 protein_coding protein_coding MGP_C57BL6NJ_T0086922.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134937884 135006274 - MGP_C57BL6NJ_P0086922 Gtf3c1 protein_coding protein_coding MGP_C57BL6NJ_T0086923.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134941113 134946908 - Gtf3c1 protein_coding retained_intron MGP_C57BL6NJ_T0086924.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134944460 134952862 - MGP_C57BL6NJ_P0086924 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086925.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134958929 135006357 - Gtf3c1 protein_coding retained_intron MGP_C57BL6NJ_T0086926.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134959241 135006339 - MGP_C57BL6NJ_P0086926 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086927.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134959361 134967653 - MGP_C57BL6NJ_P0086927 Gtf3c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086928.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134966303 134968420 - Gtf3c1 protein_coding retained_intron MGP_C57BL6NJ_T0086929.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134989816 134998094 - Gtf3c1 protein_coding retained_intron MGP_C57BL6NJ_T0086930.1 MGP_C57BL6NJ_G0033464.1 mouse_genomes_project 7 134991825 135005133 - MGP_C57BL6NJ_P0086930 Gtf3c1 protein_coding protein_coding MGP_C57BL6NJ_T0086999.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830232 135838329 - MGP_C57BL6NJ_P0086999 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087000.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830234 135838342 - MGP_C57BL6NJ_P0087000 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087001.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830235 135838369 - MGP_C57BL6NJ_P0087001 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087002.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830237 135838063 - MGP_C57BL6NJ_P0087002 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087003.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830237 135838061 - MGP_C57BL6NJ_P0087003 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087004.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830237 135836307 - MGP_C57BL6NJ_P0087004 Sh2b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087005.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135830243 135838289 - MGP_C57BL6NJ_P0087005 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0087006.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135832137 135833433 - Sh2b1 protein_coding processed_transcript MGP_C57BL6NJ_T0087007.1 MGP_C57BL6NJ_G0033475.1 mouse_genomes_project 7 135836030 135838663 - MGP_C57BL6NJ_P0087007 Sh2b1 protein_coding protein_coding MGP_C57BL6NJ_T0083060.1 MGP_C57BL6NJ_G0032377.1 mouse_genomes_project 7 27602253 27628462 - MGP_C57BL6NJ_P0083060 Zfp850 protein_coding protein_coding MGP_C57BL6NJ_T0083061.1 MGP_C57BL6NJ_G0032377.1 mouse_genomes_project 7 27602255 27603196 - MGP_C57BL6NJ_P0083061 Zfp850 protein_coding protein_coding MGP_C57BL6NJ_T0083062.1 MGP_C57BL6NJ_G0032377.1 mouse_genomes_project 7 27606111 27622763 - MGP_C57BL6NJ_P0083062 Zfp850 protein_coding protein_coding MGP_C57BL6NJ_T0086107.1 MGP_C57BL6NJ_G0033199.1 mouse_genomes_project 7 111913004 111913946 + MGP_C57BL6NJ_P0086107 Olfr651 protein_coding protein_coding MGP_C57BL6NJ_T0081859.1 MGP_C57BL6NJ_G0031992.1 mouse_genomes_project 7 1475720 1486039 - MGP_C57BL6NJ_P0081859 Dnaaf3 protein_coding protein_coding MGP_C57BL6NJ_T0002418.1 MGP_C57BL6NJ_G0002307.1 mouse_genomes_project 7 84601109 84601446 + TEC TEC MGP_C57BL6NJ_T0083889.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39634169 39643593 - MGP_C57BL6NJ_P0083889 Pop4 protein_coding protein_coding MGP_C57BL6NJ_T0083890.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39636501 39643497 - MGP_C57BL6NJ_P0083890 Pop4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083891.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39636571 39643539 - MGP_C57BL6NJ_P0083891 Pop4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083892.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39638045 39643519 - Pop4 protein_coding retained_intron MGP_C57BL6NJ_T0083893.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39638264 39643543 - MGP_C57BL6NJ_P0083893 Pop4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083894.1 MGP_C57BL6NJ_G0032567.1 mouse_genomes_project 7 39640529 39643445 - Pop4 protein_coding retained_intron MGP_C57BL6NJ_T0083600.1 MGP_C57BL6NJ_G0032505.1 mouse_genomes_project 7 31035332 31037853 + Fam187b protein_coding retained_intron MGP_C57BL6NJ_T0083601.1 MGP_C57BL6NJ_G0032505.1 mouse_genomes_project 7 31035346 31051261 + MGP_C57BL6NJ_P0083601 Fam187b protein_coding protein_coding MGP_C57BL6NJ_T0083602.1 MGP_C57BL6NJ_G0032505.1 mouse_genomes_project 7 31038585 31051267 + MGP_C57BL6NJ_P0083602 Fam187b protein_coding protein_coding MGP_C57BL6NJ_T0083603.1 MGP_C57BL6NJ_G0032505.1 mouse_genomes_project 7 31043412 31051003 + MGP_C57BL6NJ_P0083603 Fam187b protein_coding protein_coding MGP_C57BL6NJ_T0081700.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 526430 538931 + MGP_C57BL6NJ_P0081700 Prpf31 protein_coding protein_coding MGP_C57BL6NJ_T0081701.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 526430 538932 + MGP_C57BL6NJ_P0081701 Prpf31 protein_coding protein_coding MGP_C57BL6NJ_T0081702.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 526437 527867 + Prpf31 protein_coding retained_intron MGP_C57BL6NJ_T0081703.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 526504 533503 + MGP_C57BL6NJ_P0081703 Prpf31 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081704.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 527002 537675 + MGP_C57BL6NJ_P0081704 Prpf31 protein_coding protein_coding MGP_C57BL6NJ_T0081705.1 MGP_C57BL6NJ_G0031967.1 mouse_genomes_project 7 532540 533503 + Prpf31 protein_coding retained_intron MGP_C57BL6NJ_T0011111.1 MGP_C57BL6NJ_G0009196.1 mouse_genomes_project 7 29767693 29767752 + Mir7668 miRNA miRNA MGP_C57BL6NJ_T0016202.1 MGP_C57BL6NJ_G0014247.1 mouse_genomes_project 7 32182520 32183514 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086250.1 MGP_C57BL6NJ_G0033257.1 mouse_genomes_project 7 113441021 113445463 - MGP_C57BL6NJ_P0086250 Mrpl17 protein_coding protein_coding MGP_C57BL6NJ_T0086251.1 MGP_C57BL6NJ_G0033257.1 mouse_genomes_project 7 113444020 113445322 - MGP_C57BL6NJ_P0086251 Mrpl17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086252.1 MGP_C57BL6NJ_G0033257.1 mouse_genomes_project 7 113444043 113445360 - Mrpl17 protein_coding retained_intron MGP_C57BL6NJ_T0086253.1 MGP_C57BL6NJ_G0033257.1 mouse_genomes_project 7 113444128 113445363 - Mrpl17 protein_coding processed_transcript MGP_C57BL6NJ_T0086254.1 MGP_C57BL6NJ_G0033257.1 mouse_genomes_project 7 113444484 113445392 - MGP_C57BL6NJ_P0086254 Mrpl17 protein_coding protein_coding MGP_C57BL6NJ_T0081658.1 MGP_C57BL6NJ_G0031956.1 mouse_genomes_project 7 27758 37902 - AU018091 protein_coding processed_transcript MGP_C57BL6NJ_T0081659.1 MGP_C57BL6NJ_G0031956.1 mouse_genomes_project 7 27758 42145 - MGP_C57BL6NJ_P0081659 AU018091 protein_coding protein_coding MGP_C57BL6NJ_T0081660.1 MGP_C57BL6NJ_G0031956.1 mouse_genomes_project 7 35734 42047 - MGP_C57BL6NJ_P0081660 AU018091 protein_coding protein_coding MGP_C57BL6NJ_T0103440.1 MGP_C57BL6NJ_G0041232.1 mouse_genomes_project 7 46296648 46300871 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086692.1 MGP_C57BL6NJ_G0033408.1 mouse_genomes_project 7 128415000 128446555 + MGP_C57BL6NJ_P0086692 Acsm1 protein_coding protein_coding MGP_C57BL6NJ_T0086693.1 MGP_C57BL6NJ_G0033408.1 mouse_genomes_project 7 128425742 128472660 + MGP_C57BL6NJ_P0086693 Acsm1 protein_coding protein_coding MGP_C57BL6NJ_T0086694.1 MGP_C57BL6NJ_G0033408.1 mouse_genomes_project 7 128425774 128472380 + MGP_C57BL6NJ_P0086694 Acsm1 protein_coding protein_coding MGP_C57BL6NJ_T0009179.1 MGP_C57BL6NJ_G0007396.1 mouse_genomes_project 7 122725532 122827697 - 4933406I18Rik lincRNA lincRNA MGP_C57BL6NJ_T0009180.1 MGP_C57BL6NJ_G0007396.1 mouse_genomes_project 7 122767398 122827557 - 4933406I18Rik lincRNA lincRNA MGP_C57BL6NJ_T0088255.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036603 153041615 + Syt8 protein_coding processed_transcript MGP_C57BL6NJ_T0088256.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036699 153040708 + Syt8 protein_coding processed_transcript MGP_C57BL6NJ_T0088257.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036730 153042136 + MGP_C57BL6NJ_P0088257 Syt8 protein_coding protein_coding MGP_C57BL6NJ_T0088258.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036754 153042068 + Syt8 protein_coding retained_intron MGP_C57BL6NJ_T0088259.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036754 153042068 + MGP_C57BL6NJ_P0088259 Syt8 protein_coding protein_coding MGP_C57BL6NJ_T0088260.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153036754 153042068 + MGP_C57BL6NJ_P0088260 Syt8 protein_coding protein_coding MGP_C57BL6NJ_T0088261.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153038584 153042045 + MGP_C57BL6NJ_P0088261 Syt8 protein_coding protein_coding MGP_C57BL6NJ_T0088262.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153039871 153040282 + MGP_C57BL6NJ_P0088262 Syt8 protein_coding protein_coding MGP_C57BL6NJ_T0088263.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153040160 153041724 + Syt8 protein_coding retained_intron MGP_C57BL6NJ_T0088264.1 MGP_C57BL6NJ_G0033749.1 mouse_genomes_project 7 153040754 153042052 + Syt8 protein_coding retained_intron MGP_C57BL6NJ_T0086049.1 MGP_C57BL6NJ_G0033160.1 mouse_genomes_project 7 110971391 110976246 - MGP_C57BL6NJ_P0086049 Olfr68 protein_coding protein_coding MGP_C57BL6NJ_T0009091.1 MGP_C57BL6NJ_G0007337.1 mouse_genomes_project 7 74779569 74797357 - Gm28258 lincRNA lincRNA MGP_C57BL6NJ_T0082362.1 MGP_C57BL6NJ_G0032179.1 mouse_genomes_project 7 16614121 16620554 + MGP_C57BL6NJ_P0082362 Ceacam11 protein_coding protein_coding MGP_C57BL6NJ_T0086051.1 MGP_C57BL6NJ_G0033162.1 mouse_genomes_project 7 111026180 111026730 - MGP_C57BL6NJ_P0086051 protein_coding protein_coding MGP_C57BL6NJ_T0081734.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 597910 600970 + MGP_C57BL6NJ_P0081734 protein_coding protein_coding MGP_C57BL6NJ_T0081735.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 598649 601350 + MGP_C57BL6NJ_P0081735 protein_coding protein_coding MGP_C57BL6NJ_T0081736.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 598848 601789 + protein_coding retained_intron MGP_C57BL6NJ_T0081737.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 598876 601373 + MGP_C57BL6NJ_P0081737 protein_coding protein_coding MGP_C57BL6NJ_T0081738.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 599345 601257 + MGP_C57BL6NJ_P0081738 protein_coding protein_coding MGP_C57BL6NJ_T0081739.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 599555 606708 + MGP_C57BL6NJ_P0081739 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081740.1 MGP_C57BL6NJ_G0031972.1 mouse_genomes_project 7 601352 606708 + MGP_C57BL6NJ_P0081740 protein_coding protein_coding MGP_C57BL6NJ_T0082610.1 MGP_C57BL6NJ_G0032262.1 mouse_genomes_project 7 23002153 23003310 + MGP_C57BL6NJ_P0082610 V1rd19 protein_coding protein_coding MGP_C57BL6NJ_T0009090.1 MGP_C57BL6NJ_G0007336.1 mouse_genomes_project 7 74649100 74649904 - Gm29327 lincRNA lincRNA MGP_C57BL6NJ_T0086809.1 MGP_C57BL6NJ_G0033442.1 mouse_genomes_project 7 131081020 131111306 - Ears2 protein_coding retained_intron MGP_C57BL6NJ_T0086810.1 MGP_C57BL6NJ_G0033442.1 mouse_genomes_project 7 131082628 131111365 - Ears2 protein_coding retained_intron MGP_C57BL6NJ_T0086811.1 MGP_C57BL6NJ_G0033442.1 mouse_genomes_project 7 131082628 131111558 - MGP_C57BL6NJ_P0086811 Ears2 protein_coding protein_coding MGP_C57BL6NJ_T0009224.1 MGP_C57BL6NJ_G0007422.1 mouse_genomes_project 7 137204386 137215880 + Gm44514 lincRNA lincRNA MGP_C57BL6NJ_T0009225.1 MGP_C57BL6NJ_G0007422.1 mouse_genomes_project 7 137211240 137216490 + Gm44514 lincRNA lincRNA MGP_C57BL6NJ_T0002465.1 MGP_C57BL6NJ_G0002354.1 mouse_genomes_project 7 154013634 154017126 - TEC TEC MGP_C57BL6NJ_T0088285.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + Tnnt3 protein_coding processed_transcript MGP_C57BL6NJ_T0088286.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088286 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088287.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088287 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088288.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088288 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088289.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088289 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088290.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088290 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088291.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088291 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088292.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100346 153117497 + MGP_C57BL6NJ_P0088292 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088293.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100353 153117492 + MGP_C57BL6NJ_P0088293 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088294.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100353 153117492 + MGP_C57BL6NJ_P0088294 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088295.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100353 153117492 + MGP_C57BL6NJ_P0088295 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088296.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100353 153117492 + MGP_C57BL6NJ_P0088296 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088297.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100374 153117496 + MGP_C57BL6NJ_P0088297 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088298.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153100382 153117493 + MGP_C57BL6NJ_P0088298 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088299.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103127 153113025 + MGP_C57BL6NJ_P0088299 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088300.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103130 153114111 + MGP_C57BL6NJ_P0088300 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088301.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088301 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088302.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088302 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088303.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088303 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088304.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088304 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088305.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088305 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088306.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088306 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088307.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088307 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088308.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153103148 153117319 + MGP_C57BL6NJ_P0088308 Tnnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088309.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153105524 153114074 + Tnnt3 protein_coding retained_intron MGP_C57BL6NJ_T0088310.1 MGP_C57BL6NJ_G0033753.1 mouse_genomes_project 7 153115618 153117498 + Tnnt3 protein_coding retained_intron MGP_C57BL6NJ_T0084083.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46797646 46813339 + MGP_C57BL6NJ_P0084083 Syt3 protein_coding protein_coding MGP_C57BL6NJ_T0084084.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46797671 46798999 + Syt3 protein_coding processed_transcript MGP_C57BL6NJ_T0084085.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46797698 46813497 + MGP_C57BL6NJ_P0084085 Syt3 protein_coding protein_coding MGP_C57BL6NJ_T0084086.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46798148 46799601 + MGP_C57BL6NJ_P0084086 Syt3 protein_coding protein_coding MGP_C57BL6NJ_T0084087.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46798148 46799671 + MGP_C57BL6NJ_P0084087 Syt3 protein_coding protein_coding MGP_C57BL6NJ_T0084088.1 MGP_C57BL6NJ_G0032643.1 mouse_genomes_project 7 46798412 46813073 + MGP_C57BL6NJ_P0084088 Syt3 protein_coding protein_coding MGP_C57BL6NJ_T0084454.1 MGP_C57BL6NJ_G0032733.1 mouse_genomes_project 7 48412011 48417574 - MGP_C57BL6NJ_P0084454 Grwd1 protein_coding protein_coding MGP_C57BL6NJ_T0084455.1 MGP_C57BL6NJ_G0032733.1 mouse_genomes_project 7 48412014 48417561 - MGP_C57BL6NJ_P0084455 Grwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084456.1 MGP_C57BL6NJ_G0032733.1 mouse_genomes_project 7 48412016 48417729 - MGP_C57BL6NJ_P0084456 Grwd1 protein_coding protein_coding MGP_C57BL6NJ_T0084457.1 MGP_C57BL6NJ_G0032733.1 mouse_genomes_project 7 48412847 48417666 - MGP_C57BL6NJ_P0084457 Grwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087103.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169711 136173271 + MGP_C57BL6NJ_P0087103 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087104.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169731 136173268 + MGP_C57BL6NJ_P0087104 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087105.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169734 136170858 + MGP_C57BL6NJ_P0087105 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087106.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169755 136171183 + Ypel3 protein_coding processed_transcript MGP_C57BL6NJ_T0087107.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169755 136173270 + Ypel3 protein_coding processed_transcript MGP_C57BL6NJ_T0087108.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169757 136173271 + MGP_C57BL6NJ_P0087108 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087109.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169761 136172822 + MGP_C57BL6NJ_P0087109 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087110.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169903 136170631 + MGP_C57BL6NJ_P0087110 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087111.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136169969 136173203 + MGP_C57BL6NJ_P0087111 Ypel3 protein_coding protein_coding MGP_C57BL6NJ_T0087112.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136170264 136172988 + Ypel3 protein_coding processed_transcript MGP_C57BL6NJ_T0087113.1 MGP_C57BL6NJ_G0033491.1 mouse_genomes_project 7 136170337 136171050 + Ypel3 protein_coding retained_intron MGP_C57BL6NJ_T0103315.1 MGP_C57BL6NJ_G0041108.1 mouse_genomes_project 7 666060 728799 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086123.1 MGP_C57BL6NJ_G0033214.1 mouse_genomes_project 7 112183684 112185212 - MGP_C57BL6NJ_P0086123 protein_coding protein_coding MGP_C57BL6NJ_T0100584.1 MGP_C57BL6NJ_G0038630.1 mouse_genomes_project 7 48464213 48464298 - Gm22098 snRNA snRNA MGP_C57BL6NJ_T0018903.1 MGP_C57BL6NJ_G0016095.1 mouse_genomes_project 7 152508226 152509022 - processed_transcript processed_transcript MGP_C57BL6NJ_T0085977.1 MGP_C57BL6NJ_G0033092.1 mouse_genomes_project 7 109456566 109489031 + MGP_C57BL6NJ_P0085977 Rrm1 protein_coding protein_coding MGP_C57BL6NJ_T0086524.1 MGP_C57BL6NJ_G0033376.1 mouse_genomes_project 7 122827816 122959650 + MGP_C57BL6NJ_P0086524 Pde3b protein_coding protein_coding MGP_C57BL6NJ_T0086525.1 MGP_C57BL6NJ_G0033376.1 mouse_genomes_project 7 122926713 122928897 + Pde3b protein_coding retained_intron MGP_C57BL6NJ_T0086526.1 MGP_C57BL6NJ_G0033376.1 mouse_genomes_project 7 122942166 122951421 + Pde3b protein_coding retained_intron MGP_C57BL6NJ_T0100575.1 MGP_C57BL6NJ_G0038621.1 mouse_genomes_project 7 18091529 18091689 + Gm25134 snRNA snRNA MGP_C57BL6NJ_T0016268.1 MGP_C57BL6NJ_G0014313.1 mouse_genomes_project 7 51087745 51088382 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085312.1 MGP_C57BL6NJ_G0032915.1 mouse_genomes_project 7 86906228 86936597 + MGP_C57BL6NJ_P0085312 Whamm protein_coding protein_coding MGP_C57BL6NJ_T0082340.1 MGP_C57BL6NJ_G0032171.1 mouse_genomes_project 7 15493012 15499927 + MGP_C57BL6NJ_P0082340 Ccdc8 protein_coding protein_coding MGP_C57BL6NJ_T0102560.1 MGP_C57BL6NJ_G0040397.1 mouse_genomes_project 7 34535525 34569031 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102561.1 MGP_C57BL6NJ_G0040397.1 mouse_genomes_project 7 34535691 34537482 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0085476.1 MGP_C57BL6NJ_G0032984.1 mouse_genomes_project 7 95949633 95976556 - MGP_C57BL6NJ_P0085476 Eed protein_coding protein_coding MGP_C57BL6NJ_T0085477.1 MGP_C57BL6NJ_G0032984.1 mouse_genomes_project 7 95972328 95976132 - Eed protein_coding processed_transcript MGP_C57BL6NJ_T0081706.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 541713 548378 + protein_coding retained_intron MGP_C57BL6NJ_T0081707.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 541735 564539 + protein_coding retained_intron MGP_C57BL6NJ_T0081708.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 541754 550629 + MGP_C57BL6NJ_P0081708 protein_coding protein_coding MGP_C57BL6NJ_T0081709.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 544336 564499 + MGP_C57BL6NJ_P0081709 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0081710.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 550086 554605 + MGP_C57BL6NJ_P0081710 protein_coding protein_coding MGP_C57BL6NJ_T0081711.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 550348 562172 + MGP_C57BL6NJ_P0081711 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081712.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 561614 564531 + protein_coding retained_intron MGP_C57BL6NJ_T0081713.1 MGP_C57BL6NJ_G0031968.1 mouse_genomes_project 7 562820 564531 + MGP_C57BL6NJ_P0081713 protein_coding protein_coding MGP_C57BL6NJ_T0086552.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123958945 124553347 - MGP_C57BL6NJ_P0086552 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086553.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123959417 124560890 - MGP_C57BL6NJ_P0086553 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086554.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123959417 124513849 - MGP_C57BL6NJ_P0086554 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086555.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123959417 124553347 - MGP_C57BL6NJ_P0086555 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086556.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123962529 124338527 - MGP_C57BL6NJ_P0086556 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086557.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123964731 124361387 - MGP_C57BL6NJ_P0086557 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086558.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123964731 124361422 - MGP_C57BL6NJ_P0086558 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086559.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 123964744 124513849 - MGP_C57BL6NJ_P0086559 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086560.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124008307 124555760 - Sox6 protein_coding retained_intron MGP_C57BL6NJ_T0086561.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124008741 124093121 - Sox6 protein_coding processed_transcript MGP_C57BL6NJ_T0086562.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124035701 124560942 - Sox6 protein_coding retained_intron MGP_C57BL6NJ_T0086563.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124077948 124162063 - MGP_C57BL6NJ_P0086563 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086564.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124092454 124162063 - Sox6 protein_coding retained_intron MGP_C57BL6NJ_T0086565.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124296804 124374985 - MGP_C57BL6NJ_P0086565 Sox6 protein_coding protein_coding MGP_C57BL6NJ_T0086566.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124321283 124556671 - Sox6 protein_coding processed_transcript MGP_C57BL6NJ_T0086567.1 MGP_C57BL6NJ_G0033381.1 mouse_genomes_project 7 124359453 124361433 - Sox6 protein_coding retained_intron MGP_C57BL6NJ_T0087954.1 MGP_C57BL6NJ_G0033678.1 mouse_genomes_project 7 151093076 151094012 + MGP_C57BL6NJ_P0087954 Olfr61 protein_coding protein_coding MGP_C57BL6NJ_T0086101.1 MGP_C57BL6NJ_G0033196.1 mouse_genomes_project 7 111723507 111745277 - MGP_C57BL6NJ_P0086101 Trim30c protein_coding protein_coding MGP_C57BL6NJ_T0011113.1 MGP_C57BL6NJ_G0009198.1 mouse_genomes_project 7 30515709 30515786 + Gm38670 miRNA miRNA MGP_C57BL6NJ_T0016284.1 MGP_C57BL6NJ_G0014329.1 mouse_genomes_project 7 67719203 67719463 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084050.1 MGP_C57BL6NJ_G0032636.1 mouse_genomes_project 7 46613582 46619247 + MGP_C57BL6NJ_P0084050 Klk1 protein_coding protein_coding MGP_C57BL6NJ_T0084051.1 MGP_C57BL6NJ_G0032636.1 mouse_genomes_project 7 46613660 46618799 + Klk1 protein_coding retained_intron MGP_C57BL6NJ_T0084052.1 MGP_C57BL6NJ_G0032636.1 mouse_genomes_project 7 46613665 46619172 + MGP_C57BL6NJ_P0084052 Klk1 protein_coding protein_coding MGP_C57BL6NJ_T0103334.1 MGP_C57BL6NJ_G0041127.1 mouse_genomes_project 7 9875690 9876530 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005448.1 MGP_C57BL6NJ_G0004617.1 mouse_genomes_project 7 131186937 131210424 - Gm15489 antisense antisense MGP_C57BL6NJ_T0086131.1 MGP_C57BL6NJ_G0033220.1 mouse_genomes_project 7 112403667 112404621 + MGP_C57BL6NJ_P0086131 Olfr669 protein_coding protein_coding MGP_C57BL6NJ_T0009116.1 MGP_C57BL6NJ_G0007359.1 mouse_genomes_project 7 78733457 78744456 - Gm45004 lincRNA lincRNA MGP_C57BL6NJ_T0082282.1 MGP_C57BL6NJ_G0032156.1 mouse_genomes_project 7 14915270 14936065 - MGP_C57BL6NJ_P0082282 Npas1 protein_coding protein_coding MGP_C57BL6NJ_T0084116.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46921556 46928149 - MGP_C57BL6NJ_P0084116 Emc10 protein_coding protein_coding MGP_C57BL6NJ_T0084117.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46921730 46928026 - MGP_C57BL6NJ_P0084117 Emc10 protein_coding protein_coding MGP_C57BL6NJ_T0084118.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46922504 46923638 - Emc10 protein_coding retained_intron MGP_C57BL6NJ_T0084119.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46923354 46928083 - Emc10 protein_coding retained_intron MGP_C57BL6NJ_T0084120.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46923622 46928048 - MGP_C57BL6NJ_P0084120 Emc10 protein_coding protein_coding MGP_C57BL6NJ_T0084121.1 MGP_C57BL6NJ_G0032647.1 mouse_genomes_project 7 46925893 46928017 - Emc10 protein_coding retained_intron MGP_C57BL6NJ_T0100582.1 MGP_C57BL6NJ_G0038628.1 mouse_genomes_project 7 42525941 42526022 + Gm25784 snRNA snRNA MGP_C57BL6NJ_T0088458.1 MGP_C57BL6NJ_G0033785.1 mouse_genomes_project 7 155653466 155657324 + MGP_C57BL6NJ_P0088458 Fgf4 protein_coding protein_coding MGP_C57BL6NJ_T0011175.1 MGP_C57BL6NJ_G0009260.1 mouse_genomes_project 7 122047626 122047728 - Gm23700 miRNA miRNA MGP_C57BL6NJ_T0103453.1 MGP_C57BL6NJ_G0041245.1 mouse_genomes_project 7 46466869 46489311 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016331.1 MGP_C57BL6NJ_G0014376.1 mouse_genomes_project 7 104272418 104272896 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100626.1 MGP_C57BL6NJ_G0038672.1 mouse_genomes_project 7 138358155 138358257 + Gm23783 snRNA snRNA MGP_C57BL6NJ_T0087073.1 MGP_C57BL6NJ_G0033487.1 mouse_genomes_project 7 136083783 136085070 + Bola2 protein_coding retained_intron MGP_C57BL6NJ_T0087074.1 MGP_C57BL6NJ_G0033487.1 mouse_genomes_project 7 136083818 136085441 + MGP_C57BL6NJ_P0087074 Bola2 protein_coding protein_coding MGP_C57BL6NJ_T0087075.1 MGP_C57BL6NJ_G0033487.1 mouse_genomes_project 7 136084348 136085076 + Bola2 protein_coding processed_transcript MGP_C57BL6NJ_T0087076.1 MGP_C57BL6NJ_G0033487.1 mouse_genomes_project 7 136084355 136085080 + MGP_C57BL6NJ_P0087076 Bola2 protein_coding protein_coding MGP_C57BL6NJ_T0087077.1 MGP_C57BL6NJ_G0033487.1 mouse_genomes_project 7 136084385 136088181 + Bola2 protein_coding retained_intron MGP_C57BL6NJ_T0084525.1 MGP_C57BL6NJ_G0032752.1 mouse_genomes_project 7 49390880 49395278 - MGP_C57BL6NJ_P0084525 Saa4 protein_coding protein_coding MGP_C57BL6NJ_T0005404.1 MGP_C57BL6NJ_G0004589.1 mouse_genomes_project 7 85858235 85866579 + Gm15880 antisense antisense MGP_C57BL6NJ_T0083984.1 MGP_C57BL6NJ_G0032602.1 mouse_genomes_project 7 45682081 45699217 - MGP_C57BL6NJ_P0083984 Iglon5 protein_coding protein_coding MGP_C57BL6NJ_T0083985.1 MGP_C57BL6NJ_G0032602.1 mouse_genomes_project 7 45683349 45687434 - MGP_C57BL6NJ_P0083985 Iglon5 protein_coding protein_coding MGP_C57BL6NJ_T0009126.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84588224 84619584 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009127.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84588236 84619789 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009128.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84588315 84622684 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009129.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84588319 84619674 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009130.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84603417 84620872 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009131.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84603620 84619540 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0009132.1 MGP_C57BL6NJ_G0007367.1 mouse_genomes_project 7 84616031 84620325 + Mir9-3hg lincRNA lincRNA MGP_C57BL6NJ_T0101879.1 MGP_C57BL6NJ_G0039925.1 mouse_genomes_project 7 94271858 94271991 + Gm25345 snoRNA snoRNA MGP_C57BL6NJ_T0009134.1 MGP_C57BL6NJ_G0007369.1 mouse_genomes_project 7 84667666 84668934 - Gm45168 lincRNA lincRNA MGP_C57BL6NJ_T0009135.1 MGP_C57BL6NJ_G0007369.1 mouse_genomes_project 7 84667807 84668945 - Gm45168 lincRNA lincRNA MGP_C57BL6NJ_T0103348.1 MGP_C57BL6NJ_G0041141.1 mouse_genomes_project 7 12245094 12246563 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009101.1 MGP_C57BL6NJ_G0007347.1 mouse_genomes_project 7 77716390 77720710 - Gm6567 lincRNA lincRNA MGP_C57BL6NJ_T0085995.1 MGP_C57BL6NJ_G0033109.1 mouse_genomes_project 7 109742077 109743814 - MGP_C57BL6NJ_P0085995 Olfr33 protein_coding protein_coding MGP_C57BL6NJ_T0085403.1 MGP_C57BL6NJ_G0032947.1 mouse_genomes_project 7 91271566 91284676 - MGP_C57BL6NJ_P0085403 Vmn2r70 protein_coding protein_coding MGP_C57BL6NJ_T0084720.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777209 62798538 + MGP_C57BL6NJ_P0084720 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084721.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777209 62824655 + MGP_C57BL6NJ_P0084721 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084722.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777229 62840019 + Ube3a protein_coding retained_intron MGP_C57BL6NJ_T0084723.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777584 62828650 + Ube3a protein_coding processed_transcript MGP_C57BL6NJ_T0084724.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777632 62798881 + Ube3a protein_coding processed_transcript MGP_C57BL6NJ_T0084725.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62777690 62828913 + MGP_C57BL6NJ_P0084725 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084726.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62794247 62824565 + MGP_C57BL6NJ_P0084726 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084727.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62794789 62860940 + MGP_C57BL6NJ_P0084727 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084728.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62829496 62833746 + Ube3a protein_coding retained_intron MGP_C57BL6NJ_T0084729.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62834971 62838319 + Ube3a protein_coding retained_intron MGP_C57BL6NJ_T0084730.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62838734 62860942 + MGP_C57BL6NJ_P0084730 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084731.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62839498 62860952 + MGP_C57BL6NJ_P0084731 Ube3a protein_coding protein_coding MGP_C57BL6NJ_T0084732.1 MGP_C57BL6NJ_G0032806.1 mouse_genomes_project 7 62859520 62860954 + Ube3a protein_coding retained_intron MGP_C57BL6NJ_T0082913.1 MGP_C57BL6NJ_G0032340.1 mouse_genomes_project 7 26283309 26309038 + MGP_C57BL6NJ_P0082913 Cyp2a4 protein_coding protein_coding MGP_C57BL6NJ_T0101849.1 MGP_C57BL6NJ_G0039895.1 mouse_genomes_project 7 36286268 36286394 + Gm24505 snoRNA snoRNA MGP_C57BL6NJ_T0082992.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26854448 26902553 - MGP_C57BL6NJ_P0082992 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082993.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26854448 26904781 - MGP_C57BL6NJ_P0082993 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082994.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26854448 26904354 - MGP_C57BL6NJ_P0082994 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082995.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26854448 26957830 - MGP_C57BL6NJ_P0082995 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082996.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26854452 26958917 - MGP_C57BL6NJ_P0082996 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082997.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26943962 26958917 - MGP_C57BL6NJ_P0082997 Sptbn4 protein_coding protein_coding MGP_C57BL6NJ_T0082998.1 MGP_C57BL6NJ_G0032359.1 mouse_genomes_project 7 26957184 26957748 - Sptbn4 protein_coding processed_transcript MGP_C57BL6NJ_T0016140.1 MGP_C57BL6NJ_G0014185.1 mouse_genomes_project 7 11693186 11696619 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100595.1 MGP_C57BL6NJ_G0038641.1 mouse_genomes_project 7 78321564 78321669 - Gm26176 snRNA snRNA MGP_C57BL6NJ_T0086825.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131154940 131180842 - MGP_C57BL6NJ_P0086825 Palb2 protein_coding protein_coding MGP_C57BL6NJ_T0086826.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131154940 131180879 - MGP_C57BL6NJ_P0086826 Palb2 protein_coding protein_coding MGP_C57BL6NJ_T0086827.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131154940 131180777 - MGP_C57BL6NJ_P0086827 Palb2 protein_coding protein_coding MGP_C57BL6NJ_T0086828.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131154943 131159719 - Palb2 protein_coding retained_intron MGP_C57BL6NJ_T0086829.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131154945 131172378 - MGP_C57BL6NJ_P0086829 Palb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086830.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131159250 131180850 - MGP_C57BL6NJ_P0086830 Palb2 protein_coding protein_coding MGP_C57BL6NJ_T0086831.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131159250 131180821 - MGP_C57BL6NJ_P0086831 Palb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086832.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131173514 131180852 - Palb2 protein_coding retained_intron MGP_C57BL6NJ_T0086833.1 MGP_C57BL6NJ_G0033445.1 mouse_genomes_project 7 131178773 131180918 - Palb2 protein_coding retained_intron MGP_C57BL6NJ_T0085925.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109059962 109079157 + MGP_C57BL6NJ_P0085925 Xndc1 protein_coding protein_coding MGP_C57BL6NJ_T0085926.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109059971 109075696 + Xndc1 protein_coding retained_intron MGP_C57BL6NJ_T0085927.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109059973 109064455 + Xndc1 protein_coding processed_transcript MGP_C57BL6NJ_T0085928.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109060044 109072354 + MGP_C57BL6NJ_P0085928 Xndc1 protein_coding protein_coding MGP_C57BL6NJ_T0085931.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109060209 109078476 + MGP_C57BL6NJ_P0085931 Xndc1 protein_coding protein_coding MGP_C57BL6NJ_T0085935.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109070368 109074667 + Xndc1 protein_coding retained_intron MGP_C57BL6NJ_T0085936.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109074184 109079160 + MGP_C57BL6NJ_P0085936 Xndc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085937.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109076452 109077986 + Xndc1 protein_coding processed_transcript MGP_C57BL6NJ_T0085938.1 MGP_C57BL6NJ_G0033082.1 mouse_genomes_project 7 109076455 109077916 + Xndc1 protein_coding retained_intron MGP_C57BL6NJ_T0016276.1 MGP_C57BL6NJ_G0014321.1 mouse_genomes_project 7 60153801 60154813 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016273.1 MGP_C57BL6NJ_G0014318.1 mouse_genomes_project 7 59017416 59017774 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086012.1 MGP_C57BL6NJ_G0033124.1 mouse_genomes_project 7 110109235 110115871 + MGP_C57BL6NJ_P0086012 Olfr583 protein_coding protein_coding MGP_C57BL6NJ_T0018793.1 MGP_C57BL6NJ_G0016047.1 mouse_genomes_project 7 23246560 23247812 + Gm44796 processed_transcript processed_transcript MGP_C57BL6NJ_T0084034.1 MGP_C57BL6NJ_G0032621.1 mouse_genomes_project 7 46143728 46148373 + MGP_C57BL6NJ_P0084034 Klk4 protein_coding protein_coding MGP_C57BL6NJ_T0084582.1 MGP_C57BL6NJ_G0032774.1 mouse_genomes_project 7 51318551 51330624 - MGP_C57BL6NJ_P0084582 Mrgprb1 protein_coding protein_coding MGP_C57BL6NJ_T0084583.1 MGP_C57BL6NJ_G0032774.1 mouse_genomes_project 7 51321338 51330577 - MGP_C57BL6NJ_P0084583 Mrgprb1 protein_coding protein_coding MGP_C57BL6NJ_T0084584.1 MGP_C57BL6NJ_G0032774.1 mouse_genomes_project 7 51321568 51330528 - MGP_C57BL6NJ_P0084584 Mrgprb1 protein_coding protein_coding MGP_C57BL6NJ_T0086274.1 MGP_C57BL6NJ_G0033276.1 mouse_genomes_project 7 114839653 114840604 - MGP_C57BL6NJ_P0086274 Olfr6 protein_coding protein_coding MGP_C57BL6NJ_T0016387.1 MGP_C57BL6NJ_G0014432.1 mouse_genomes_project 7 138683945 138684703 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009191.1 MGP_C57BL6NJ_G0007401.1 mouse_genomes_project 7 125117784 125119884 + Gm45151 lincRNA lincRNA MGP_C57BL6NJ_T0084848.1 MGP_C57BL6NJ_G0032833.1 mouse_genomes_project 7 70231780 70297709 + MGP_C57BL6NJ_P0084848 Chsy1 protein_coding protein_coding MGP_C57BL6NJ_T0082909.1 MGP_C57BL6NJ_G0032338.1 mouse_genomes_project 7 26243950 26265799 + MGP_C57BL6NJ_P0082909 Cyp2g1 protein_coding protein_coding MGP_C57BL6NJ_T0082910.1 MGP_C57BL6NJ_G0032338.1 mouse_genomes_project 7 26243985 26262775 + MGP_C57BL6NJ_P0082910 Cyp2g1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082911.1 MGP_C57BL6NJ_G0032338.1 mouse_genomes_project 7 26253235 26258557 + Cyp2g1 protein_coding retained_intron MGP_C57BL6NJ_T0086321.1 MGP_C57BL6NJ_G0033316.1 mouse_genomes_project 7 116563598 116564657 - MGP_C57BL6NJ_P0086321 Olfr502 protein_coding protein_coding MGP_C57BL6NJ_T0083092.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27954824 27961381 - MGP_C57BL6NJ_P0083092 Timm50 protein_coding protein_coding MGP_C57BL6NJ_T0083093.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27955132 27955973 - Timm50 protein_coding retained_intron MGP_C57BL6NJ_T0083094.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27955736 27957327 - Timm50 protein_coding retained_intron MGP_C57BL6NJ_T0083095.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27958814 27961346 - Timm50 protein_coding retained_intron MGP_C57BL6NJ_T0083096.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27959525 27961365 - Timm50 protein_coding retained_intron MGP_C57BL6NJ_T0083097.1 MGP_C57BL6NJ_G0032388.1 mouse_genomes_project 7 27960222 27961248 - Timm50 protein_coding processed_transcript MGP_C57BL6NJ_T0083428.1 MGP_C57BL6NJ_G0032469.1 mouse_genomes_project 7 30367990 30374395 + MGP_C57BL6NJ_P0083428 Nfkbid protein_coding protein_coding MGP_C57BL6NJ_T0083429.1 MGP_C57BL6NJ_G0032469.1 mouse_genomes_project 7 30371766 30372470 + Nfkbid protein_coding retained_intron MGP_C57BL6NJ_T0086146.1 MGP_C57BL6NJ_G0033235.1 mouse_genomes_project 7 112851997 112854778 + MGP_C57BL6NJ_P0086146 Olfr688 protein_coding protein_coding MGP_C57BL6NJ_T0085116.1 MGP_C57BL6NJ_G0032882.1 mouse_genomes_project 7 85001167 85046518 - MGP_C57BL6NJ_P0085116 Ap3s2 protein_coding protein_coding MGP_C57BL6NJ_T0085117.1 MGP_C57BL6NJ_G0032882.1 mouse_genomes_project 7 85008357 85046465 - MGP_C57BL6NJ_P0085117 Ap3s2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086047.1 MGP_C57BL6NJ_G0033158.1 mouse_genomes_project 7 110928521 110929466 - MGP_C57BL6NJ_P0086047 Olfr629 protein_coding protein_coding MGP_C57BL6NJ_T0083963.1 MGP_C57BL6NJ_G0032595.1 mouse_genomes_project 7 45635335 45643657 + MGP_C57BL6NJ_P0083963 Gm38999 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086812.1 MGP_C57BL6NJ_G0033443.1 mouse_genomes_project 7 131111469 131126490 + MGP_C57BL6NJ_P0086812 Ubfd1 protein_coding protein_coding MGP_C57BL6NJ_T0086813.1 MGP_C57BL6NJ_G0033443.1 mouse_genomes_project 7 131111502 131121928 + Ubfd1 protein_coding retained_intron MGP_C57BL6NJ_T0086814.1 MGP_C57BL6NJ_G0033443.1 mouse_genomes_project 7 131111734 131115701 + Ubfd1 protein_coding retained_intron MGP_C57BL6NJ_T0086815.1 MGP_C57BL6NJ_G0033443.1 mouse_genomes_project 7 131111741 131113274 + Ubfd1 protein_coding processed_transcript MGP_C57BL6NJ_T0086816.1 MGP_C57BL6NJ_G0033443.1 mouse_genomes_project 7 131113193 131122907 + MGP_C57BL6NJ_P0086816 Ubfd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099154.1 MGP_C57BL6NJ_G0037218.1 mouse_genomes_project 7 121477920 121478031 + Gm23662 rRNA rRNA MGP_C57BL6NJ_T0082593.1 MGP_C57BL6NJ_G0032252.1 mouse_genomes_project 7 18990107 19031570 + MGP_C57BL6NJ_P0082593 protein_coding protein_coding MGP_C57BL6NJ_T0082594.1 MGP_C57BL6NJ_G0032252.1 mouse_genomes_project 7 19001889 19046459 + MGP_C57BL6NJ_P0082594 protein_coding protein_coding MGP_C57BL6NJ_T0009013.1 MGP_C57BL6NJ_G0007281.1 mouse_genomes_project 7 35543157 35554846 + Gm12784 lincRNA lincRNA MGP_C57BL6NJ_T0009014.1 MGP_C57BL6NJ_G0007281.1 mouse_genomes_project 7 35545891 35588975 + Gm12784 lincRNA lincRNA MGP_C57BL6NJ_T0084028.1 MGP_C57BL6NJ_G0032619.1 mouse_genomes_project 7 46081111 46091034 + MGP_C57BL6NJ_P0084028 Klk6 protein_coding protein_coding MGP_C57BL6NJ_T0084029.1 MGP_C57BL6NJ_G0032619.1 mouse_genomes_project 7 46081170 46090790 + MGP_C57BL6NJ_P0084029 Klk6 protein_coding protein_coding MGP_C57BL6NJ_T0084030.1 MGP_C57BL6NJ_G0032619.1 mouse_genomes_project 7 46081182 46087598 + MGP_C57BL6NJ_P0084030 Klk6 protein_coding protein_coding MGP_C57BL6NJ_T0084031.1 MGP_C57BL6NJ_G0032619.1 mouse_genomes_project 7 46084398 46090790 + MGP_C57BL6NJ_P0084031 Klk6 protein_coding protein_coding MGP_C57BL6NJ_T0084260.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47645491 47660836 - Aldh16a1 protein_coding retained_intron MGP_C57BL6NJ_T0084261.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47645712 47660883 - MGP_C57BL6NJ_P0084261 Aldh16a1 protein_coding protein_coding MGP_C57BL6NJ_T0084262.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47646642 47649497 - MGP_C57BL6NJ_P0084262 Aldh16a1 protein_coding protein_coding MGP_C57BL6NJ_T0084263.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47647252 47660894 - MGP_C57BL6NJ_P0084263 Aldh16a1 protein_coding protein_coding MGP_C57BL6NJ_T0084264.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47647586 47649531 - Aldh16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0084265.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47649859 47650842 - Aldh16a1 protein_coding retained_intron MGP_C57BL6NJ_T0084266.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47652205 47660800 - Aldh16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0084267.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47652266 47660757 - Aldh16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0084268.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47652345 47652658 - Aldh16a1 protein_coding processed_transcript MGP_C57BL6NJ_T0084269.1 MGP_C57BL6NJ_G0032686.1 mouse_genomes_project 7 47652690 47653987 - Aldh16a1 protein_coding retained_intron MGP_C57BL6NJ_T0084038.1 MGP_C57BL6NJ_G0032624.1 mouse_genomes_project 7 46265987 46275779 + MGP_C57BL6NJ_P0084038 Klk1b1 protein_coding protein_coding MGP_C57BL6NJ_T0088090.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863031 151868612 + Tmem80 protein_coding processed_transcript MGP_C57BL6NJ_T0088091.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863180 151873529 + MGP_C57BL6NJ_P0088091 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088092.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863180 151874468 + MGP_C57BL6NJ_P0088092 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088093.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863422 151874123 + MGP_C57BL6NJ_P0088093 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088094.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863422 151874468 + MGP_C57BL6NJ_P0088094 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088095.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151863452 151868653 + Tmem80 protein_coding processed_transcript MGP_C57BL6NJ_T0088096.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151868639 151874125 + MGP_C57BL6NJ_P0088096 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088097.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151868706 151873379 + MGP_C57BL6NJ_P0088097 Tmem80 protein_coding protein_coding MGP_C57BL6NJ_T0088098.1 MGP_C57BL6NJ_G0033718.1 mouse_genomes_project 7 151868983 151873459 + Tmem80 protein_coding retained_intron MGP_C57BL6NJ_T0084237.1 MGP_C57BL6NJ_G0032672.1 mouse_genomes_project 7 47460836 47472024 - MGP_C57BL6NJ_P0084237 protein_coding protein_coding MGP_C57BL6NJ_T0085855.1 MGP_C57BL6NJ_G0033069.1 mouse_genomes_project 7 108500763 108502558 - MGP_C57BL6NJ_P0085855 Art2b protein_coding protein_coding MGP_C57BL6NJ_T0086774.1 MGP_C57BL6NJ_G0033429.1 mouse_genomes_project 7 129877363 129908586 + MGP_C57BL6NJ_P0086774 Polr3e protein_coding protein_coding MGP_C57BL6NJ_T0086775.1 MGP_C57BL6NJ_G0033429.1 mouse_genomes_project 7 129877363 129908586 + MGP_C57BL6NJ_P0086775 Polr3e protein_coding protein_coding MGP_C57BL6NJ_T0101884.1 MGP_C57BL6NJ_G0039930.1 mouse_genomes_project 7 106192450 106192598 - Snord15a snoRNA snoRNA MGP_C57BL6NJ_T0086622.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126810188 126940631 - MGP_C57BL6NJ_P0086622 Smg1 protein_coding protein_coding MGP_C57BL6NJ_T0086623.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126811599 126940284 - MGP_C57BL6NJ_P0086623 Smg1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086624.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126811601 126913676 - MGP_C57BL6NJ_P0086624 Smg1 protein_coding protein_coding MGP_C57BL6NJ_T0086625.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126821551 126822566 - MGP_C57BL6NJ_P0086625 Smg1 protein_coding protein_coding MGP_C57BL6NJ_T0086626.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126885522 126940631 - Smg1 protein_coding retained_intron MGP_C57BL6NJ_T0086627.1 MGP_C57BL6NJ_G0033390.1 mouse_genomes_project 7 126892357 126940621 - MGP_C57BL6NJ_P0086627 Smg1 protein_coding protein_coding MGP_C57BL6NJ_T0081975.1 MGP_C57BL6NJ_G0032036.1 mouse_genomes_project 7 3217881 3221123 - MGP_C57BL6NJ_P0081975 Vmn1r65 protein_coding protein_coding MGP_C57BL6NJ_T0085649.1 MGP_C57BL6NJ_G0033023.1 mouse_genomes_project 7 105139713 105148696 + MGP_C57BL6NJ_P0085649 Lrrc32 protein_coding protein_coding MGP_C57BL6NJ_T0085650.1 MGP_C57BL6NJ_G0033023.1 mouse_genomes_project 7 105140138 105152623 + MGP_C57BL6NJ_P0085650 Lrrc32 protein_coding protein_coding MGP_C57BL6NJ_T0085651.1 MGP_C57BL6NJ_G0033023.1 mouse_genomes_project 7 105144663 105152273 + MGP_C57BL6NJ_P0085651 Lrrc32 protein_coding protein_coding MGP_C57BL6NJ_T0087069.1 MGP_C57BL6NJ_G0033486.1 mouse_genomes_project 7 136077821 136084167 - MGP_C57BL6NJ_P0087069 Slx1b protein_coding protein_coding MGP_C57BL6NJ_T0087070.1 MGP_C57BL6NJ_G0033486.1 mouse_genomes_project 7 136079003 136084022 - Slx1b protein_coding retained_intron MGP_C57BL6NJ_T0087071.1 MGP_C57BL6NJ_G0033486.1 mouse_genomes_project 7 136079443 136084128 - Slx1b protein_coding retained_intron MGP_C57BL6NJ_T0087072.1 MGP_C57BL6NJ_G0033486.1 mouse_genomes_project 7 136079443 136084107 - MGP_C57BL6NJ_P0087072 Slx1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009200.1 MGP_C57BL6NJ_G0007409.1 mouse_genomes_project 7 134163035 134169502 + Gm45092 lincRNA lincRNA MGP_C57BL6NJ_T0086983.1 MGP_C57BL6NJ_G0033472.1 mouse_genomes_project 7 135768309 135774728 - Cd19 protein_coding retained_intron MGP_C57BL6NJ_T0086984.1 MGP_C57BL6NJ_G0033472.1 mouse_genomes_project 7 135768310 135774749 - MGP_C57BL6NJ_P0086984 Cd19 protein_coding protein_coding MGP_C57BL6NJ_T0086985.1 MGP_C57BL6NJ_G0033472.1 mouse_genomes_project 7 135768310 135774732 - MGP_C57BL6NJ_P0086985 Cd19 protein_coding protein_coding MGP_C57BL6NJ_T0086986.1 MGP_C57BL6NJ_G0033472.1 mouse_genomes_project 7 135769221 135769656 - Cd19 protein_coding retained_intron MGP_C57BL6NJ_T0086987.1 MGP_C57BL6NJ_G0033472.1 mouse_genomes_project 7 135773521 135774410 - Cd19 protein_coding retained_intron MGP_C57BL6NJ_T0011181.1 MGP_C57BL6NJ_G0009266.1 mouse_genomes_project 7 136983951 136984088 + Mir7060 miRNA miRNA MGP_C57BL6NJ_T0103501.1 MGP_C57BL6NJ_G0041293.1 mouse_genomes_project 7 91219753 91233901 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085722.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106859314 106901000 - MGP_C57BL6NJ_P0085722 Pold3 protein_coding protein_coding MGP_C57BL6NJ_T0085723.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106860596 106900890 - MGP_C57BL6NJ_P0085723 Pold3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085724.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106860786 106871725 - Pold3 protein_coding retained_intron MGP_C57BL6NJ_T0085725.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106860865 106868098 - Pold3 protein_coding retained_intron MGP_C57BL6NJ_T0085726.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106874369 106878667 - Pold3 protein_coding retained_intron MGP_C57BL6NJ_T0085727.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106877037 106878540 - Pold3 protein_coding retained_intron MGP_C57BL6NJ_T0085728.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106877568 106900893 - Pold3 protein_coding processed_transcript MGP_C57BL6NJ_T0085729.1 MGP_C57BL6NJ_G0033045.1 mouse_genomes_project 7 106891707 106899358 - Pold3 protein_coding processed_transcript MGP_C57BL6NJ_T0084923.1 MGP_C57BL6NJ_G0032845.1 mouse_genomes_project 7 72184993 72467942 + MGP_C57BL6NJ_P0084923 Igf1r protein_coding protein_coding MGP_C57BL6NJ_T0082920.1 MGP_C57BL6NJ_G0032342.1 mouse_genomes_project 7 26482426 26489066 + protein_coding retained_intron MGP_C57BL6NJ_T0082921.1 MGP_C57BL6NJ_G0032342.1 mouse_genomes_project 7 26482426 26488641 + MGP_C57BL6NJ_P0082921 protein_coding protein_coding MGP_C57BL6NJ_T0012123.1 MGP_C57BL6NJ_G0010168.1 mouse_genomes_project 7 108469132 108476973 - MGP_C57BL6NJ_P0012123 Art2a-ps polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0005384.1 MGP_C57BL6NJ_G0004574.1 mouse_genomes_project 7 68298598 68307517 - Gm20457 antisense antisense MGP_C57BL6NJ_T0005297.1 MGP_C57BL6NJ_G0004515.1 mouse_genomes_project 7 1029075 1075963 - 9430041J12Rik antisense antisense MGP_C57BL6NJ_T0005298.1 MGP_C57BL6NJ_G0004515.1 mouse_genomes_project 7 1029105 1075682 - 9430041J12Rik antisense antisense MGP_C57BL6NJ_T0005299.1 MGP_C57BL6NJ_G0004515.1 mouse_genomes_project 7 1029478 1075682 - 9430041J12Rik antisense antisense MGP_C57BL6NJ_T0005300.1 MGP_C57BL6NJ_G0004515.1 mouse_genomes_project 7 1075144 1075682 - 9430041J12Rik antisense pseudogene MGP_C57BL6NJ_T0103480.1 MGP_C57BL6NJ_G0041272.1 mouse_genomes_project 7 51046227 51047575 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016192.1 MGP_C57BL6NJ_G0014237.1 mouse_genomes_project 7 31594741 31595201 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016384.1 MGP_C57BL6NJ_G0014429.1 mouse_genomes_project 7 138309540 138309824 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009248.1 MGP_C57BL6NJ_G0007439.1 mouse_genomes_project 7 150375791 150376826 - Gm2044 lincRNA lincRNA MGP_C57BL6NJ_T0005295.1 MGP_C57BL6NJ_G0004513.1 mouse_genomes_project 7 308580 318007 - Gm44151 antisense antisense MGP_C57BL6NJ_T0103411.1 MGP_C57BL6NJ_G0041203.1 mouse_genomes_project 7 34516005 34517794 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086325.1 MGP_C57BL6NJ_G0033320.1 mouse_genomes_project 7 116704979 116706054 - MGP_C57BL6NJ_P0086325 Olfr509 protein_coding protein_coding MGP_C57BL6NJ_T0085602.1 MGP_C57BL6NJ_G0033013.1 mouse_genomes_project 7 104344079 104358363 - MGP_C57BL6NJ_P0085602 Aqp11 protein_coding protein_coding MGP_C57BL6NJ_T0085603.1 MGP_C57BL6NJ_G0033013.1 mouse_genomes_project 7 104346452 104358012 - MGP_C57BL6NJ_P0085603 Aqp11 protein_coding protein_coding MGP_C57BL6NJ_T0085604.1 MGP_C57BL6NJ_G0033013.1 mouse_genomes_project 7 104346620 104349462 - Aqp11 protein_coding retained_intron MGP_C57BL6NJ_T0085605.1 MGP_C57BL6NJ_G0033013.1 mouse_genomes_project 7 104347503 104353301 - Aqp11 protein_coding retained_intron MGP_C57BL6NJ_T0085606.1 MGP_C57BL6NJ_G0033013.1 mouse_genomes_project 7 104349124 104350579 - Aqp11 protein_coding processed_transcript MGP_C57BL6NJ_T0016291.1 MGP_C57BL6NJ_G0014336.1 mouse_genomes_project 7 73963165 73964164 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103327.1 MGP_C57BL6NJ_G0041120.1 mouse_genomes_project 7 8350220 8350540 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087644.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632277 140680484 + MGP_C57BL6NJ_P0087644 Plekha1 protein_coding protein_coding MGP_C57BL6NJ_T0087645.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632406 140661116 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0087646.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632408 140644579 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0087647.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632419 140679240 + MGP_C57BL6NJ_P0087647 Plekha1 protein_coding protein_coding MGP_C57BL6NJ_T0087648.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632424 140676987 + MGP_C57BL6NJ_P0087648 Plekha1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087649.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140632431 140680474 + MGP_C57BL6NJ_P0087649 Plekha1 protein_coding protein_coding MGP_C57BL6NJ_T0087650.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140648664 140651833 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0087651.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140663365 140671807 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0087652.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140666908 140676842 + Plekha1 protein_coding processed_transcript MGP_C57BL6NJ_T0087653.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140668625 140676066 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0087654.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140671284 140678335 + MGP_C57BL6NJ_P0087654 Plekha1 protein_coding protein_coding MGP_C57BL6NJ_T0087655.1 MGP_C57BL6NJ_G0033588.1 mouse_genomes_project 7 140671684 140678073 + Plekha1 protein_coding retained_intron MGP_C57BL6NJ_T0018885.1 MGP_C57BL6NJ_G0016085.1 mouse_genomes_project 7 136357511 136368188 + Gm21984 processed_transcript processed_transcript MGP_C57BL6NJ_T0103324.1 MGP_C57BL6NJ_G0041117.1 mouse_genomes_project 7 8096713 8100507 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009138.1 MGP_C57BL6NJ_G0007372.1 mouse_genomes_project 7 85487573 85489462 - 6330403N20Rik lincRNA lincRNA MGP_C57BL6NJ_T0085413.1 MGP_C57BL6NJ_G0032956.1 mouse_genomes_project 7 92107942 92108998 - MGP_C57BL6NJ_P0085413 Olfr308 protein_coding protein_coding MGP_C57BL6NJ_T0082676.1 MGP_C57BL6NJ_G0032278.1 mouse_genomes_project 7 23557640 23581488 + MGP_C57BL6NJ_P0082676 Cadm4 protein_coding protein_coding MGP_C57BL6NJ_T0082677.1 MGP_C57BL6NJ_G0032278.1 mouse_genomes_project 7 23576919 23579753 + Cadm4 protein_coding processed_transcript MGP_C57BL6NJ_T0086283.1 MGP_C57BL6NJ_G0033285.1 mouse_genomes_project 7 115068757 115102108 + MGP_C57BL6NJ_P0086283 Nlrp14 protein_coding protein_coding MGP_C57BL6NJ_T0086284.1 MGP_C57BL6NJ_G0033285.1 mouse_genomes_project 7 115090080 115102117 + MGP_C57BL6NJ_P0086284 Nlrp14 protein_coding protein_coding MGP_C57BL6NJ_T0009075.1 MGP_C57BL6NJ_G0007327.1 mouse_genomes_project 7 69668116 69727493 - lincRNA lincRNA MGP_C57BL6NJ_T0083568.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30877838 30892410 - MGP_C57BL6NJ_P0083568 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083569.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878263 30893416 - MGP_C57BL6NJ_P0083569 Cd22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083570.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878263 30893651 - MGP_C57BL6NJ_P0083570 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083571.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878263 30893447 - MGP_C57BL6NJ_P0083571 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083572.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878265 30891877 - MGP_C57BL6NJ_P0083572 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083573.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878699 30893716 - MGP_C57BL6NJ_P0083573 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083574.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878725 30893661 - MGP_C57BL6NJ_P0083574 Cd22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083575.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30878967 30893696 - MGP_C57BL6NJ_P0083575 Cd22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083576.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30882910 30885757 - MGP_C57BL6NJ_P0083576 Cd22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083577.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30889491 30892606 - Cd22 protein_coding processed_transcript MGP_C57BL6NJ_T0083578.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30890866 30893643 - MGP_C57BL6NJ_P0083578 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083579.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30891006 30891530 - Cd22 protein_coding retained_intron MGP_C57BL6NJ_T0083580.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30891046 30893660 - Cd22 protein_coding processed_transcript MGP_C57BL6NJ_T0083581.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30891085 30893660 - Cd22 protein_coding processed_transcript MGP_C57BL6NJ_T0083582.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30891161 30893650 - MGP_C57BL6NJ_P0083582 Cd22 protein_coding protein_coding MGP_C57BL6NJ_T0083583.1 MGP_C57BL6NJ_G0032499.1 mouse_genomes_project 7 30892574 30893724 - Cd22 protein_coding processed_transcript MGP_C57BL6NJ_T0083536.1 MGP_C57BL6NJ_G0032492.1 mouse_genomes_project 7 30706249 30711875 - MGP_C57BL6NJ_P0083536 Gapdhs protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083537.1 MGP_C57BL6NJ_G0032492.1 mouse_genomes_project 7 30706254 30734572 - MGP_C57BL6NJ_P0083537 Gapdhs protein_coding protein_coding MGP_C57BL6NJ_T0083538.1 MGP_C57BL6NJ_G0032492.1 mouse_genomes_project 7 30706361 30729619 - MGP_C57BL6NJ_P0083538 Gapdhs protein_coding protein_coding MGP_C57BL6NJ_T0101855.1 MGP_C57BL6NJ_G0039901.1 mouse_genomes_project 7 47631241 47631331 - Snord35a snoRNA snoRNA MGP_C57BL6NJ_T0086981.1 MGP_C57BL6NJ_G0033471.1 mouse_genomes_project 7 135734578 135753599 - MGP_C57BL6NJ_P0086981 Nfatc2ip protein_coding protein_coding MGP_C57BL6NJ_T0086982.1 MGP_C57BL6NJ_G0033471.1 mouse_genomes_project 7 135738357 135745001 - MGP_C57BL6NJ_P0086982 Nfatc2ip protein_coding protein_coding MGP_C57BL6NJ_T0009221.1 MGP_C57BL6NJ_G0007420.1 mouse_genomes_project 7 136739958 136743601 + Gm44728 lincRNA lincRNA MGP_C57BL6NJ_T0009222.1 MGP_C57BL6NJ_G0007420.1 mouse_genomes_project 7 136740444 136744013 + Gm44728 lincRNA lincRNA MGP_C57BL6NJ_T0083284.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29142198 29208403 - MGP_C57BL6NJ_P0083284 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083285.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29142204 29183845 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083286.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29142204 29343183 - MGP_C57BL6NJ_P0083286 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083287.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29142204 29343183 - MGP_C57BL6NJ_P0083287 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083288.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29145681 29183767 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083289.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29146174 29156901 - MGP_C57BL6NJ_P0083289 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083290.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29146469 29198458 - MGP_C57BL6NJ_P0083290 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083291.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29147773 29169917 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083292.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29159016 29167024 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083293.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29196223 29197931 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083294.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29197343 29198466 - MGP_C57BL6NJ_P0083294 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083295.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29201480 29208543 - Sipa1l3 protein_coding retained_intron MGP_C57BL6NJ_T0083296.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29215053 29343175 - Sipa1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083297.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29235510 29356455 - MGP_C57BL6NJ_P0083297 Sipa1l3 protein_coding protein_coding MGP_C57BL6NJ_T0083298.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29235615 29356484 - Sipa1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083299.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29235688 29356458 - Sipa1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083300.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29332130 29356403 - Sipa1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083301.1 MGP_C57BL6NJ_G0032433.1 mouse_genomes_project 7 29354613 29356398 - Sipa1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0088416.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154552245 154576535 + MGP_C57BL6NJ_P0088416 Dhcr7 protein_coding protein_coding MGP_C57BL6NJ_T0088417.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154558147 154576530 + MGP_C57BL6NJ_P0088417 Dhcr7 protein_coding protein_coding MGP_C57BL6NJ_T0088418.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154558304 154573640 + MGP_C57BL6NJ_P0088418 Dhcr7 protein_coding protein_coding MGP_C57BL6NJ_T0088419.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154558308 154571217 + MGP_C57BL6NJ_P0088419 Dhcr7 protein_coding protein_coding MGP_C57BL6NJ_T0088420.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154558328 154565959 + Dhcr7 protein_coding processed_transcript MGP_C57BL6NJ_T0088421.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154568999 154571370 + Dhcr7 protein_coding processed_transcript MGP_C57BL6NJ_T0088422.1 MGP_C57BL6NJ_G0033777.1 mouse_genomes_project 7 154569404 154575480 + Dhcr7 protein_coding processed_transcript MGP_C57BL6NJ_T0086026.1 MGP_C57BL6NJ_G0033137.1 mouse_genomes_project 7 110455674 110461437 - MGP_C57BL6NJ_P0086026 protein_coding protein_coding MGP_C57BL6NJ_T0082052.1 MGP_C57BL6NJ_G0032075.1 mouse_genomes_project 7 8447199 8449236 - MGP_C57BL6NJ_P0082052 Vmn1r71 protein_coding protein_coding MGP_C57BL6NJ_T0083521.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30629527 30640750 - MGP_C57BL6NJ_P0083521 Haus5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083522.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30629532 30640811 - MGP_C57BL6NJ_P0083522 Haus5 protein_coding protein_coding MGP_C57BL6NJ_T0083523.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30629754 30632820 - Haus5 protein_coding retained_intron MGP_C57BL6NJ_T0083524.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30633376 30634779 - Haus5 protein_coding retained_intron MGP_C57BL6NJ_T0083525.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30633904 30640777 - Haus5 protein_coding retained_intron MGP_C57BL6NJ_T0083526.1 MGP_C57BL6NJ_G0032487.1 mouse_genomes_project 7 30634663 30636672 - Haus5 protein_coding retained_intron MGP_C57BL6NJ_T0002404.1 MGP_C57BL6NJ_G0002293.1 mouse_genomes_project 7 80372966 80376150 + TEC TEC MGP_C57BL6NJ_T0016152.1 MGP_C57BL6NJ_G0014197.1 mouse_genomes_project 7 14979182 14979921 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085131.1 MGP_C57BL6NJ_G0032886.1 mouse_genomes_project 7 85373460 85408398 + Sema4b protein_coding retained_intron MGP_C57BL6NJ_T0085132.1 MGP_C57BL6NJ_G0032886.1 mouse_genomes_project 7 85384605 85412964 + MGP_C57BL6NJ_P0085132 Sema4b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085133.1 MGP_C57BL6NJ_G0032886.1 mouse_genomes_project 7 85385090 85400631 + Sema4b protein_coding retained_intron MGP_C57BL6NJ_T0086776.1 MGP_C57BL6NJ_G0033430.1 mouse_genomes_project 7 129918044 129944949 - Cdr2 protein_coding processed_transcript MGP_C57BL6NJ_T0086777.1 MGP_C57BL6NJ_G0033430.1 mouse_genomes_project 7 129918044 129945471 - MGP_C57BL6NJ_P0086777 Cdr2 protein_coding protein_coding MGP_C57BL6NJ_T0084406.1 MGP_C57BL6NJ_G0032721.1 mouse_genomes_project 7 48234232 48250946 - MGP_C57BL6NJ_P0084406 Sec1 protein_coding protein_coding MGP_C57BL6NJ_T0084039.1 MGP_C57BL6NJ_G0032625.1 mouse_genomes_project 7 46281889 46286227 + MGP_C57BL6NJ_P0084039 Klk1b9 protein_coding protein_coding MGP_C57BL6NJ_T0103375.1 MGP_C57BL6NJ_G0041168.1 mouse_genomes_project 7 13588278 13588674 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085420.1 MGP_C57BL6NJ_G0032963.1 mouse_genomes_project 7 92301933 92302932 - MGP_C57BL6NJ_P0085420 Olfr298 protein_coding protein_coding MGP_C57BL6NJ_T0016300.1 MGP_C57BL6NJ_G0014345.1 mouse_genomes_project 7 79657932 79658738 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084587.1 MGP_C57BL6NJ_G0032776.1 mouse_genomes_project 7 51430532 51437659 - MGP_C57BL6NJ_P0084587 Mrgprb2 protein_coding protein_coding MGP_C57BL6NJ_T0086391.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118133814 118138266 - Tmem41b protein_coding retained_intron MGP_C57BL6NJ_T0086392.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118134124 118150646 - MGP_C57BL6NJ_P0086392 Tmem41b protein_coding protein_coding MGP_C57BL6NJ_T0086393.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118135929 118150839 - MGP_C57BL6NJ_P0086393 Tmem41b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086394.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118135929 118150726 - MGP_C57BL6NJ_P0086394 Tmem41b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086395.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118135996 118150813 - MGP_C57BL6NJ_P0086395 Tmem41b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086396.1 MGP_C57BL6NJ_G0033345.1 mouse_genomes_project 7 118139326 118150823 - Tmem41b protein_coding retained_intron MGP_C57BL6NJ_T0103323.1 MGP_C57BL6NJ_G0041116.1 mouse_genomes_project 7 8038677 8074308 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085037.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84183601 84193620 - Mfge8 protein_coding retained_intron MGP_C57BL6NJ_T0085038.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84183601 84201821 - MGP_C57BL6NJ_P0085038 Mfge8 protein_coding protein_coding MGP_C57BL6NJ_T0085039.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84183602 84201828 - MGP_C57BL6NJ_P0085039 Mfge8 protein_coding protein_coding MGP_C57BL6NJ_T0085040.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84183949 84201799 - MGP_C57BL6NJ_P0085040 Mfge8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085041.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84183972 84186860 - Mfge8 protein_coding retained_intron MGP_C57BL6NJ_T0085042.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84186367 84192641 - Mfge8 protein_coding retained_intron MGP_C57BL6NJ_T0085043.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84191711 84192884 - Mfge8 protein_coding retained_intron MGP_C57BL6NJ_T0085044.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84192702 84197413 - Mfge8 protein_coding processed_transcript MGP_C57BL6NJ_T0085045.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84194753 84201757 - Mfge8 protein_coding retained_intron MGP_C57BL6NJ_T0085046.1 MGP_C57BL6NJ_G0032868.1 mouse_genomes_project 7 84195167 84200996 - Mfge8 protein_coding processed_transcript MGP_C57BL6NJ_T0018877.1 MGP_C57BL6NJ_G0016081.1 mouse_genomes_project 7 126940858 126942545 + 4930583K01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0086108.1 MGP_C57BL6NJ_G0033200.1 mouse_genomes_project 7 111936196 111937257 + MGP_C57BL6NJ_P0086108 Olfr652 protein_coding protein_coding MGP_C57BL6NJ_T0086109.1 MGP_C57BL6NJ_G0033200.1 mouse_genomes_project 7 111936276 111937224 + MGP_C57BL6NJ_P0086109 Olfr652 protein_coding protein_coding MGP_C57BL6NJ_T0086133.1 MGP_C57BL6NJ_G0033222.1 mouse_genomes_project 7 112442067 112443009 - MGP_C57BL6NJ_P0086133 Olfr675 protein_coding protein_coding MGP_C57BL6NJ_T0081884.1 MGP_C57BL6NJ_G0031999.1 mouse_genomes_project 7 1692819 1715423 - MGP_C57BL6NJ_P0081884 protein_coding protein_coding MGP_C57BL6NJ_T0083773.1 MGP_C57BL6NJ_G0032546.1 mouse_genomes_project 7 36180149 36182785 + MGP_C57BL6NJ_P0083773 Cebpa protein_coding protein_coding MGP_C57BL6NJ_T0083774.1 MGP_C57BL6NJ_G0032546.1 mouse_genomes_project 7 36180159 36182785 + MGP_C57BL6NJ_P0083774 Cebpa protein_coding protein_coding MGP_C57BL6NJ_T0011078.1 MGP_C57BL6NJ_G0009163.1 mouse_genomes_project 7 103705 103787 + Mir292 miRNA miRNA MGP_C57BL6NJ_T0005440.1 MGP_C57BL6NJ_G0004612.1 mouse_genomes_project 7 129823091 129825698 - antisense antisense MGP_C57BL6NJ_T0016243.1 MGP_C57BL6NJ_G0014288.1 mouse_genomes_project 7 43264319 43265006 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016390.1 MGP_C57BL6NJ_G0014435.1 mouse_genomes_project 7 146146902 146147888 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103449.1 MGP_C57BL6NJ_G0041241.1 mouse_genomes_project 7 46401144 46403445 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084349.1 MGP_C57BL6NJ_G0032707.1 mouse_genomes_project 7 47998697 48003901 - MGP_C57BL6NJ_P0084349 Bax protein_coding protein_coding MGP_C57BL6NJ_T0082958.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26710743 26737392 + MGP_C57BL6NJ_P0082958 Coq8b protein_coding protein_coding MGP_C57BL6NJ_T0082959.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26710933 26737386 + MGP_C57BL6NJ_P0082959 Coq8b protein_coding protein_coding MGP_C57BL6NJ_T0082960.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26711129 26737387 + MGP_C57BL6NJ_P0082960 Coq8b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082961.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26717996 26721766 + Coq8b protein_coding processed_transcript MGP_C57BL6NJ_T0082962.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26718257 26721061 + Coq8b protein_coding retained_intron MGP_C57BL6NJ_T0082963.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26729624 26737385 + Coq8b protein_coding retained_intron MGP_C57BL6NJ_T0082964.1 MGP_C57BL6NJ_G0032353.1 mouse_genomes_project 7 26729826 26736855 + Coq8b protein_coding processed_transcript MGP_C57BL6NJ_T0083019.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27083630 27132735 + MGP_C57BL6NJ_P0083019 2310022A10Rik protein_coding protein_coding MGP_C57BL6NJ_T0083020.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27083664 27125320 + MGP_C57BL6NJ_P0083020 2310022A10Rik protein_coding protein_coding MGP_C57BL6NJ_T0083021.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27083667 27084469 + 2310022A10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0083022.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27083683 27132735 + MGP_C57BL6NJ_P0083022 2310022A10Rik protein_coding protein_coding MGP_C57BL6NJ_T0083023.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27091052 27132730 + MGP_C57BL6NJ_P0083023 2310022A10Rik protein_coding protein_coding MGP_C57BL6NJ_T0083024.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27091073 27123929 + 2310022A10Rik protein_coding retained_intron MGP_C57BL6NJ_T0083025.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27102265 27131270 + MGP_C57BL6NJ_P0083025 2310022A10Rik protein_coding protein_coding MGP_C57BL6NJ_T0083026.1 MGP_C57BL6NJ_G0032366.1 mouse_genomes_project 7 27125068 27131056 + 2310022A10Rik protein_coding processed_transcript MGP_C57BL6NJ_T0002370.1 MGP_C57BL6NJ_G0002260.1 mouse_genomes_project 7 52423108 52425107 + TEC TEC MGP_C57BL6NJ_T0083386.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30220726 30245232 + MGP_C57BL6NJ_P0083386 Clip3 protein_coding protein_coding MGP_C57BL6NJ_T0083387.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30220782 30221728 + Clip3 protein_coding retained_intron MGP_C57BL6NJ_T0083388.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30220783 30226153 + MGP_C57BL6NJ_P0083388 Clip3 protein_coding protein_coding MGP_C57BL6NJ_T0083389.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30220793 30225909 + MGP_C57BL6NJ_P0083389 Clip3 protein_coding protein_coding MGP_C57BL6NJ_T0083390.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30221012 30225920 + MGP_C57BL6NJ_P0083390 Clip3 protein_coding protein_coding MGP_C57BL6NJ_T0083391.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30226102 30229033 + Clip3 protein_coding processed_transcript MGP_C57BL6NJ_T0083392.1 MGP_C57BL6NJ_G0032460.1 mouse_genomes_project 7 30233793 30244169 + Clip3 protein_coding processed_transcript MGP_C57BL6NJ_T0103551.1 MGP_C57BL6NJ_G0041343.1 mouse_genomes_project 7 137927837 137928031 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084861.1 MGP_C57BL6NJ_G0032836.1 mouse_genomes_project 7 70788703 70835206 - MGP_C57BL6NJ_P0084861 Asb7 protein_coding protein_coding MGP_C57BL6NJ_T0084862.1 MGP_C57BL6NJ_G0032836.1 mouse_genomes_project 7 70788703 70833011 - MGP_C57BL6NJ_P0084862 Asb7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084863.1 MGP_C57BL6NJ_G0032836.1 mouse_genomes_project 7 70821153 70835084 - MGP_C57BL6NJ_P0084863 Asb7 protein_coding protein_coding MGP_C57BL6NJ_T0101861.1 MGP_C57BL6NJ_G0039907.1 mouse_genomes_project 7 61656374 61656506 - Gm26288 snoRNA snoRNA MGP_C57BL6NJ_T0086151.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112932134 112960956 - MGP_C57BL6NJ_P0086151 Fam160a2 protein_coding protein_coding MGP_C57BL6NJ_T0086152.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112932134 112960978 - MGP_C57BL6NJ_P0086152 Fam160a2 protein_coding protein_coding MGP_C57BL6NJ_T0086154.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112939533 112960909 - MGP_C57BL6NJ_P0086154 Fam160a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086155.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112939533 112960978 - MGP_C57BL6NJ_P0086155 Fam160a2 protein_coding protein_coding MGP_C57BL6NJ_T0086156.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112939534 112960935 - MGP_C57BL6NJ_P0086156 Fam160a2 protein_coding protein_coding MGP_C57BL6NJ_T0086157.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112939534 112960932 - MGP_C57BL6NJ_P0086157 Fam160a2 protein_coding protein_coding MGP_C57BL6NJ_T0086158.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112939999 112942905 - Fam160a2 protein_coding retained_intron MGP_C57BL6NJ_T0086159.1 MGP_C57BL6NJ_G0033240.1 mouse_genomes_project 7 112946311 112950035 - Fam160a2 protein_coding retained_intron MGP_C57BL6NJ_T0005479.1 MGP_C57BL6NJ_G0004641.1 mouse_genomes_project 7 153986010 153993870 - antisense antisense MGP_C57BL6NJ_T0103508.1 MGP_C57BL6NJ_G0041300.1 mouse_genomes_project 7 91563043 91563782 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087570.1 MGP_C57BL6NJ_G0033577.1 mouse_genomes_project 7 138144383 138171367 + MGP_C57BL6NJ_P0087570 Bag3 protein_coding protein_coding MGP_C57BL6NJ_T0009213.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136386863 136390652 - lincRNA lincRNA MGP_C57BL6NJ_T0009214.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136387766 136390961 - lincRNA lincRNA MGP_C57BL6NJ_T0009215.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136387766 136390979 - lincRNA lincRNA MGP_C57BL6NJ_T0009216.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136387766 136391240 - lincRNA lincRNA MGP_C57BL6NJ_T0009217.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136387767 136390930 - lincRNA lincRNA MGP_C57BL6NJ_T0009218.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136387768 136390988 - lincRNA lincRNA MGP_C57BL6NJ_T0009219.1 MGP_C57BL6NJ_G0007418.1 mouse_genomes_project 7 136389995 136391194 - lincRNA lincRNA MGP_C57BL6NJ_T0009016.1 MGP_C57BL6NJ_G0007283.1 mouse_genomes_project 7 35679179 35690347 - Gm12756 lincRNA lincRNA MGP_C57BL6NJ_T0085563.1 MGP_C57BL6NJ_G0033006.1 mouse_genomes_project 7 103985605 103994805 + MGP_C57BL6NJ_P0085563 Ndufc2 protein_coding protein_coding MGP_C57BL6NJ_T0085564.1 MGP_C57BL6NJ_G0033006.1 mouse_genomes_project 7 103985705 103994083 + MGP_C57BL6NJ_P0085564 Ndufc2 protein_coding protein_coding MGP_C57BL6NJ_T0082759.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24215612 24282907 - MGP_C57BL6NJ_P0082759 Grik5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082760.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24215612 24283152 - MGP_C57BL6NJ_P0082760 Grik5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082761.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24215612 24283098 - MGP_C57BL6NJ_P0082761 Grik5 protein_coding protein_coding MGP_C57BL6NJ_T0082762.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24253711 24268581 - Grik5 protein_coding retained_intron MGP_C57BL6NJ_T0082763.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24269314 24274397 - Grik5 protein_coding retained_intron MGP_C57BL6NJ_T0082764.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24269499 24270197 - Grik5 protein_coding retained_intron MGP_C57BL6NJ_T0082765.1 MGP_C57BL6NJ_G0032300.1 mouse_genomes_project 7 24277767 24283116 - Grik5 protein_coding processed_transcript MGP_C57BL6NJ_T0087192.1 MGP_C57BL6NJ_G0033502.1 mouse_genomes_project 7 136344547 136360999 + MGP_C57BL6NJ_P0087192 Kctd13 protein_coding protein_coding MGP_C57BL6NJ_T0087193.1 MGP_C57BL6NJ_G0033502.1 mouse_genomes_project 7 136345589 136356768 + Kctd13 protein_coding retained_intron MGP_C57BL6NJ_T0087194.1 MGP_C57BL6NJ_G0033502.1 mouse_genomes_project 7 136357415 136360335 + Kctd13 protein_coding retained_intron MGP_C57BL6NJ_T0086497.1 MGP_C57BL6NJ_G0033366.1 mouse_genomes_project 7 121291517 121295013 + MGP_C57BL6NJ_P0086497 Rassf10 protein_coding protein_coding MGP_C57BL6NJ_T0086796.1 MGP_C57BL6NJ_G0033439.1 mouse_genomes_project 7 130886666 130954987 + MGP_C57BL6NJ_P0086796 Scnn1b protein_coding protein_coding MGP_C57BL6NJ_T0086797.1 MGP_C57BL6NJ_G0033439.1 mouse_genomes_project 7 130886705 130954989 + MGP_C57BL6NJ_P0086797 Scnn1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086800.1 MGP_C57BL6NJ_G0033439.1 mouse_genomes_project 7 130932950 130948412 + MGP_C57BL6NJ_P0086800 Scnn1b protein_coding protein_coding MGP_C57BL6NJ_T0100612.1 MGP_C57BL6NJ_G0038658.1 mouse_genomes_project 7 120228772 120228922 - Gm23345 snRNA snRNA MGP_C57BL6NJ_T0087698.1 MGP_C57BL6NJ_G0033605.1 mouse_genomes_project 7 142118741 142199480 - MGP_C57BL6NJ_P0087698 Chst15 protein_coding protein_coding MGP_C57BL6NJ_T0087699.1 MGP_C57BL6NJ_G0033605.1 mouse_genomes_project 7 142118741 142198966 - MGP_C57BL6NJ_P0087699 Chst15 protein_coding protein_coding MGP_C57BL6NJ_T0087700.1 MGP_C57BL6NJ_G0033605.1 mouse_genomes_project 7 142153725 142160957 - Chst15 protein_coding processed_transcript MGP_C57BL6NJ_T0009162.1 MGP_C57BL6NJ_G0007385.1 mouse_genomes_project 7 105034159 105065026 - Gm44507 lincRNA lincRNA MGP_C57BL6NJ_T0103372.1 MGP_C57BL6NJ_G0041165.1 mouse_genomes_project 7 13116280 13116922 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081804.1 MGP_C57BL6NJ_G0031985.1 mouse_genomes_project 7 1265619 1274762 + MGP_C57BL6NJ_P0081804 Ncr1 protein_coding protein_coding MGP_C57BL6NJ_T0081805.1 MGP_C57BL6NJ_G0031985.1 mouse_genomes_project 7 1265664 1274762 + MGP_C57BL6NJ_P0081805 Ncr1 protein_coding protein_coding MGP_C57BL6NJ_T0018887.1 MGP_C57BL6NJ_G0016087.1 mouse_genomes_project 7 137767903 137778772 - 4931431B13Rik processed_transcript antisense MGP_C57BL6NJ_T0018888.1 MGP_C57BL6NJ_G0016087.1 mouse_genomes_project 7 137777521 137778768 - 4931431B13Rik processed_transcript retained_intron MGP_C57BL6NJ_T0009060.1 MGP_C57BL6NJ_G0007316.1 mouse_genomes_project 7 46912317 46913210 + Gm45123 lincRNA lincRNA MGP_C57BL6NJ_T0086112.1 MGP_C57BL6NJ_G0033203.1 mouse_genomes_project 7 111975985 111976912 - MGP_C57BL6NJ_P0086112 Olfr655 protein_coding protein_coding MGP_C57BL6NJ_T0082223.1 MGP_C57BL6NJ_G0032142.1 mouse_genomes_project 7 14472978 14505896 + MGP_C57BL6NJ_P0082223 Zfp541 protein_coding protein_coding MGP_C57BL6NJ_T0087786.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 143917630 144281251 - MGP_C57BL6NJ_P0087786 Adam12 protein_coding protein_coding MGP_C57BL6NJ_T0087787.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 143923403 144003280 - MGP_C57BL6NJ_P0087787 Adam12 protein_coding protein_coding MGP_C57BL6NJ_T0087788.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 144018620 144288932 - MGP_C57BL6NJ_P0087788 Adam12 protein_coding protein_coding MGP_C57BL6NJ_T0087789.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 144024464 144289073 - MGP_C57BL6NJ_P0087789 Adam12 protein_coding protein_coding MGP_C57BL6NJ_T0087790.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 144219567 144220610 - Adam12 protein_coding retained_intron MGP_C57BL6NJ_T0087791.1 MGP_C57BL6NJ_G0033621.1 mouse_genomes_project 7 144243563 144281526 - Adam12 protein_coding processed_transcript MGP_C57BL6NJ_T0084588.1 MGP_C57BL6NJ_G0032777.1 mouse_genomes_project 7 51528476 51529485 - MGP_C57BL6NJ_P0084588 Mrgprb3 protein_coding protein_coding MGP_C57BL6NJ_T0084239.1 MGP_C57BL6NJ_G0032674.1 mouse_genomes_project 7 47476784 47483142 - MGP_C57BL6NJ_P0084239 Bcl2l12 protein_coding protein_coding MGP_C57BL6NJ_T0016177.1 MGP_C57BL6NJ_G0014222.1 mouse_genomes_project 7 25222969 25223321 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103497.1 MGP_C57BL6NJ_G0041289.1 mouse_genomes_project 7 90942203 91010602 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002443.1 MGP_C57BL6NJ_G0002332.1 mouse_genomes_project 7 131783344 131784972 - TEC TEC MGP_C57BL6NJ_T0087515.1 MGP_C57BL6NJ_G0033569.1 mouse_genomes_project 7 137816716 137820290 - MGP_C57BL6NJ_P0087515 9130023H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0084574.1 MGP_C57BL6NJ_G0032767.1 mouse_genomes_project 7 50219802 50220971 - MGP_C57BL6NJ_P0084574 protein_coding protein_coding MGP_C57BL6NJ_T0084575.1 MGP_C57BL6NJ_G0032767.1 mouse_genomes_project 7 50219803 50273830 - MGP_C57BL6NJ_P0084575 protein_coding protein_coding MGP_C57BL6NJ_T0082500.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18267899 18277302 - MGP_C57BL6NJ_P0082500 Klc3 protein_coding protein_coding MGP_C57BL6NJ_T0082501.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18267902 18273121 - MGP_C57BL6NJ_P0082501 Klc3 protein_coding protein_coding MGP_C57BL6NJ_T0082502.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18267902 18273078 - MGP_C57BL6NJ_P0082502 Klc3 protein_coding protein_coding MGP_C57BL6NJ_T0082503.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18267963 18269445 - Klc3 protein_coding retained_intron MGP_C57BL6NJ_T0082504.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18268026 18272750 - MGP_C57BL6NJ_P0082504 Klc3 protein_coding protein_coding MGP_C57BL6NJ_T0082505.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18268519 18277020 - MGP_C57BL6NJ_P0082505 Klc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082506.1 MGP_C57BL6NJ_G0032222.1 mouse_genomes_project 7 18268816 18270045 - Klc3 protein_coding retained_intron MGP_C57BL6NJ_T0016171.1 MGP_C57BL6NJ_G0014216.1 mouse_genomes_project 7 24694958 24695632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082035.1 MGP_C57BL6NJ_G0032062.1 mouse_genomes_project 7 4466245 4472246 - MGP_C57BL6NJ_P0082035 Zfp773 protein_coding protein_coding MGP_C57BL6NJ_T0016203.1 MGP_C57BL6NJ_G0014248.1 mouse_genomes_project 7 32203417 32203858 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085461.1 MGP_C57BL6NJ_G0032980.1 mouse_genomes_project 7 95608637 95609665 - MGP_C57BL6NJ_P0085461 protein_coding protein_coding MGP_C57BL6NJ_T0086075.1 MGP_C57BL6NJ_G0033186.1 mouse_genomes_project 7 111408170 111417712 - MGP_C57BL6NJ_P0086075 Olfm5 protein_coding protein_coding MGP_C57BL6NJ_T0086076.1 MGP_C57BL6NJ_G0033186.1 mouse_genomes_project 7 111409274 111417693 - MGP_C57BL6NJ_P0086076 Olfm5 protein_coding protein_coding MGP_C57BL6NJ_T0009117.1 MGP_C57BL6NJ_G0007360.1 mouse_genomes_project 7 79536478 79541735 + Gm30459 lincRNA lincRNA MGP_C57BL6NJ_T0103396.1 MGP_C57BL6NJ_G0041188.1 mouse_genomes_project 7 31628401 31629656 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085871.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108835835 - MGP_C57BL6NJ_P0085871 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085872.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108827737 - MGP_C57BL6NJ_P0085872 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085873.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108835859 - MGP_C57BL6NJ_P0085873 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085874.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108835940 - MGP_C57BL6NJ_P0085874 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085875.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108835933 - MGP_C57BL6NJ_P0085875 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085876.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108820928 108831506 - MGP_C57BL6NJ_P0085876 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085877.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108821701 108834703 - MGP_C57BL6NJ_P0085877 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085878.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108821711 108835866 - MGP_C57BL6NJ_P0085878 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085879.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108821770 108835938 - MGP_C57BL6NJ_P0085879 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085880.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108822003 108834476 - MGP_C57BL6NJ_P0085880 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085881.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827514 108835940 - MGP_C57BL6NJ_P0085881 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085882.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827516 108834170 - MGP_C57BL6NJ_P0085882 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085883.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827519 108835939 - MGP_C57BL6NJ_P0085883 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085884.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827552 108833819 - MGP_C57BL6NJ_P0085884 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085885.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827591 108834474 - MGP_C57BL6NJ_P0085885 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085886.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108827669 108835736 - MGP_C57BL6NJ_P0085886 Folr1 protein_coding protein_coding MGP_C57BL6NJ_T0085887.1 MGP_C57BL6NJ_G0033074.1 mouse_genomes_project 7 108833616 108835253 - Folr1 protein_coding processed_transcript MGP_C57BL6NJ_T0009061.1 MGP_C57BL6NJ_G0007317.1 mouse_genomes_project 7 47749332 47769656 + lincRNA lincRNA MGP_C57BL6NJ_T0009062.1 MGP_C57BL6NJ_G0007317.1 mouse_genomes_project 7 47769617 47783070 + lincRNA lincRNA MGP_C57BL6NJ_T0083155.1 MGP_C57BL6NJ_G0032405.1 mouse_genomes_project 7 28471425 28471852 - Mrps12 protein_coding processed_transcript MGP_C57BL6NJ_T0083156.1 MGP_C57BL6NJ_G0032405.1 mouse_genomes_project 7 28471425 28474354 - MGP_C57BL6NJ_P0083156 Mrps12 protein_coding protein_coding MGP_C57BL6NJ_T0083157.1 MGP_C57BL6NJ_G0032405.1 mouse_genomes_project 7 28471426 28474404 - MGP_C57BL6NJ_P0083157 Mrps12 protein_coding protein_coding MGP_C57BL6NJ_T0083158.1 MGP_C57BL6NJ_G0032405.1 mouse_genomes_project 7 28471676 28472606 - MGP_C57BL6NJ_P0083158 Mrps12 protein_coding protein_coding MGP_C57BL6NJ_T0082529.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504706 18532383 - Relb protein_coding retained_intron MGP_C57BL6NJ_T0082530.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504706 18532383 - Relb protein_coding retained_intron MGP_C57BL6NJ_T0082531.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504706 18532383 - Relb protein_coding retained_intron MGP_C57BL6NJ_T0082532.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504706 18532383 - MGP_C57BL6NJ_P0082532 Relb protein_coding protein_coding MGP_C57BL6NJ_T0082533.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504706 18532383 - MGP_C57BL6NJ_P0082533 Relb protein_coding protein_coding MGP_C57BL6NJ_T0082534.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18504712 18532383 - MGP_C57BL6NJ_P0082534 Relb protein_coding protein_coding MGP_C57BL6NJ_T0082535.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18517182 18531729 - Relb protein_coding processed_transcript MGP_C57BL6NJ_T0082536.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18518580 18531418 - Relb protein_coding processed_transcript MGP_C57BL6NJ_T0082537.1 MGP_C57BL6NJ_G0032234.1 mouse_genomes_project 7 18518644 18531379 - Relb protein_coding processed_transcript MGP_C57BL6NJ_T0103510.1 MGP_C57BL6NJ_G0041302.1 mouse_genomes_project 7 91644890 91645198 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086145.1 MGP_C57BL6NJ_G0033234.1 mouse_genomes_project 7 112812584 112813113 + MGP_C57BL6NJ_P0086145 protein_coding protein_coding MGP_C57BL6NJ_T0082483.1 MGP_C57BL6NJ_G0032219.1 mouse_genomes_project 7 18229721 18232354 - MGP_C57BL6NJ_P0082483 Cd3eap protein_coding protein_coding MGP_C57BL6NJ_T0082484.1 MGP_C57BL6NJ_G0032219.1 mouse_genomes_project 7 18231711 18232356 - Cd3eap protein_coding retained_intron MGP_C57BL6NJ_T0009147.1 MGP_C57BL6NJ_G0007374.1 mouse_genomes_project 7 88283871 88291946 + 1700010L04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009148.1 MGP_C57BL6NJ_G0007374.1 mouse_genomes_project 7 88288349 88291945 + 1700010L04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009149.1 MGP_C57BL6NJ_G0007374.1 mouse_genomes_project 7 88288359 88291501 + 1700010L04Rik lincRNA lincRNA MGP_C57BL6NJ_T0009111.1 MGP_C57BL6NJ_G0007355.1 mouse_genomes_project 7 78305819 78313722 + Gm44737 lincRNA lincRNA MGP_C57BL6NJ_T0082019.1 MGP_C57BL6NJ_G0032054.1 mouse_genomes_project 7 3789378 3793981 - MGP_C57BL6NJ_P0082019 Olfr1347 protein_coding protein_coding MGP_C57BL6NJ_T0086754.1 MGP_C57BL6NJ_G0033425.1 mouse_genomes_project 7 129587157 129600705 - MGP_C57BL6NJ_P0086754 Pdzd9 protein_coding protein_coding MGP_C57BL6NJ_T0086755.1 MGP_C57BL6NJ_G0033425.1 mouse_genomes_project 7 129587215 129600612 - Pdzd9 protein_coding processed_transcript MGP_C57BL6NJ_T0088173.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152005227 152010683 + MGP_C57BL6NJ_P0088173 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0088174.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152006028 152009101 + MGP_C57BL6NJ_P0088174 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0088175.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152006093 152007534 + MGP_C57BL6NJ_P0088175 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0088176.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152007182 152008801 + MGP_C57BL6NJ_P0088176 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0088177.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152007482 152010142 + MGP_C57BL6NJ_P0088177 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0088178.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152008115 152008904 + Cracr2b protein_coding retained_intron MGP_C57BL6NJ_T0088179.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152009165 152009747 + Cracr2b protein_coding retained_intron MGP_C57BL6NJ_T0088180.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152009299 152010428 + Cracr2b protein_coding retained_intron MGP_C57BL6NJ_T0088181.1 MGP_C57BL6NJ_G0033727.1 mouse_genomes_project 7 152009743 152010683 + MGP_C57BL6NJ_P0088181 Cracr2b protein_coding protein_coding MGP_C57BL6NJ_T0016375.1 MGP_C57BL6NJ_G0014420.1 mouse_genomes_project 7 136585180 136586118 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086504.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884899 121943063 + MGP_C57BL6NJ_P0086504 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086505.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884926 121922039 + Far1 protein_coding retained_intron MGP_C57BL6NJ_T0086506.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884926 121919115 + MGP_C57BL6NJ_P0086506 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086507.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884926 121943063 + MGP_C57BL6NJ_P0086507 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086508.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884927 121942010 + MGP_C57BL6NJ_P0086508 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086509.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884942 121921574 + MGP_C57BL6NJ_P0086509 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086510.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121884946 121898708 + Far1 protein_coding retained_intron MGP_C57BL6NJ_T0086511.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121885163 121910924 + MGP_C57BL6NJ_P0086511 Far1 protein_coding protein_coding MGP_C57BL6NJ_T0086512.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121918992 121924677 + Far1 protein_coding retained_intron MGP_C57BL6NJ_T0086513.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121932485 121939702 + Far1 protein_coding retained_intron MGP_C57BL6NJ_T0086514.1 MGP_C57BL6NJ_G0033370.1 mouse_genomes_project 7 121937651 121939757 + Far1 protein_coding retained_intron MGP_C57BL6NJ_T0081941.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2009417 2021991 - Zfp579 protein_coding processed_transcript MGP_C57BL6NJ_T0081942.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2018787 2022094 - Zfp579 protein_coding processed_transcript MGP_C57BL6NJ_T0081943.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2018787 2021276 - MGP_C57BL6NJ_P0081943 Zfp579 protein_coding protein_coding MGP_C57BL6NJ_T0081944.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2018789 2022037 - MGP_C57BL6NJ_P0081944 Zfp579 protein_coding protein_coding MGP_C57BL6NJ_T0081945.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2020136 2022021 - MGP_C57BL6NJ_P0081945 Zfp579 protein_coding protein_coding MGP_C57BL6NJ_T0081946.1 MGP_C57BL6NJ_G0032016.1 mouse_genomes_project 7 2020946 2021965 - Zfp579 protein_coding processed_transcript MGP_C57BL6NJ_T0018832.1 MGP_C57BL6NJ_G0016063.1 mouse_genomes_project 7 59340611 59351100 + A230056P14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018833.1 MGP_C57BL6NJ_G0016063.1 mouse_genomes_project 7 59340611 59358888 + A230056P14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0103326.1 MGP_C57BL6NJ_G0041119.1 mouse_genomes_project 7 8298698 8299072 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084160.1 MGP_C57BL6NJ_G0032654.1 mouse_genomes_project 7 47029709 47043572 + MGP_C57BL6NJ_P0084160 Kcnc3 protein_coding protein_coding MGP_C57BL6NJ_T0084161.1 MGP_C57BL6NJ_G0032654.1 mouse_genomes_project 7 47029709 47043578 + MGP_C57BL6NJ_P0084161 Kcnc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084162.1 MGP_C57BL6NJ_G0032654.1 mouse_genomes_project 7 47029709 47043572 + MGP_C57BL6NJ_P0084162 Kcnc3 protein_coding protein_coding MGP_C57BL6NJ_T0103428.1 MGP_C57BL6NJ_G0041220.1 mouse_genomes_project 7 42933138 42936467 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083693.1 MGP_C57BL6NJ_G0032526.1 mouse_genomes_project 7 34426200 34428178 - MGP_C57BL6NJ_P0083693 Scgb2b21 protein_coding protein_coding MGP_C57BL6NJ_T0082442.1 MGP_C57BL6NJ_G0032208.1 mouse_genomes_project 7 17985010 17998142 - MGP_C57BL6NJ_P0082442 Qpctl protein_coding protein_coding MGP_C57BL6NJ_T0082443.1 MGP_C57BL6NJ_G0032208.1 mouse_genomes_project 7 17988862 17996379 - Qpctl protein_coding retained_intron MGP_C57BL6NJ_T0083594.1 MGP_C57BL6NJ_G0032503.1 mouse_genomes_project 7 30988843 30990258 - MGP_C57BL6NJ_P0083594 Hamp protein_coding protein_coding MGP_C57BL6NJ_T0086348.1 MGP_C57BL6NJ_G0033334.1 mouse_genomes_project 7 117388932 117552038 - Stk33 protein_coding processed_transcript MGP_C57BL6NJ_T0086349.1 MGP_C57BL6NJ_G0033334.1 mouse_genomes_project 7 117388932 117552033 - MGP_C57BL6NJ_P0086349 Stk33 protein_coding protein_coding MGP_C57BL6NJ_T0086350.1 MGP_C57BL6NJ_G0033334.1 mouse_genomes_project 7 117388932 117551774 - MGP_C57BL6NJ_P0086350 Stk33 protein_coding protein_coding MGP_C57BL6NJ_T0086351.1 MGP_C57BL6NJ_G0033334.1 mouse_genomes_project 7 117388932 117552038 - MGP_C57BL6NJ_P0086351 Stk33 protein_coding protein_coding MGP_C57BL6NJ_T0086352.1 MGP_C57BL6NJ_G0033334.1 mouse_genomes_project 7 117389304 117551955 - MGP_C57BL6NJ_P0086352 Stk33 protein_coding protein_coding MGP_C57BL6NJ_T0084048.1 MGP_C57BL6NJ_G0032634.1 mouse_genomes_project 7 46584004 46588134 + MGP_C57BL6NJ_P0084048 Klk1b3 protein_coding protein_coding MGP_C57BL6NJ_T0005457.1 MGP_C57BL6NJ_G0004625.1 mouse_genomes_project 7 137110283 137110829 - 1700120K04Rik antisense antisense MGP_C57BL6NJ_T0083098.1 MGP_C57BL6NJ_G0032389.1 mouse_genomes_project 7 27966979 27990813 - MGP_C57BL6NJ_P0083098 Supt5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083099.1 MGP_C57BL6NJ_G0032389.1 mouse_genomes_project 7 27966988 27990778 - MGP_C57BL6NJ_P0083099 Supt5 protein_coding protein_coding MGP_C57BL6NJ_T0016256.1 MGP_C57BL6NJ_G0014301.1 mouse_genomes_project 7 45089101 45089889 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005462.1 MGP_C57BL6NJ_G0004629.1 mouse_genomes_project 7 138352347 138353476 + Gm44674 antisense antisense MGP_C57BL6NJ_T0086315.1 MGP_C57BL6NJ_G0033310.1 mouse_genomes_project 7 116353282 116354215 + MGP_C57BL6NJ_P0086315 Olfr491 protein_coding protein_coding MGP_C57BL6NJ_T0081759.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 976083 1018075 - MGP_C57BL6NJ_P0081759 Lair1 protein_coding protein_coding MGP_C57BL6NJ_T0081760.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 979637 1018100 - MGP_C57BL6NJ_P0081760 Lair1 protein_coding protein_coding MGP_C57BL6NJ_T0081761.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 980623 1018070 - MGP_C57BL6NJ_P0081761 Lair1 protein_coding protein_coding MGP_C57BL6NJ_T0081762.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 981544 1018057 - MGP_C57BL6NJ_P0081762 Lair1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081763.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 981571 1018035 - MGP_C57BL6NJ_P0081763 Lair1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081764.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 981731 993277 - Lair1 protein_coding processed_transcript MGP_C57BL6NJ_T0081765.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 982137 1018012 - MGP_C57BL6NJ_P0081765 Lair1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081766.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 982227 1018037 - MGP_C57BL6NJ_P0081766 Lair1 protein_coding protein_coding MGP_C57BL6NJ_T0081767.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 982227 1018037 - MGP_C57BL6NJ_P0081767 Lair1 protein_coding protein_coding MGP_C57BL6NJ_T0081768.1 MGP_C57BL6NJ_G0031979.1 mouse_genomes_project 7 993431 1018044 - Lair1 protein_coding processed_transcript MGP_C57BL6NJ_T0086326.1 MGP_C57BL6NJ_G0033321.1 mouse_genomes_project 7 116735349 116736294 + MGP_C57BL6NJ_P0086326 Olfr510 protein_coding protein_coding MGP_C57BL6NJ_T0101865.1 MGP_C57BL6NJ_G0039911.1 mouse_genomes_project 7 62907315 62907394 - snoRNA snoRNA MGP_C57BL6NJ_T0016264.1 MGP_C57BL6NJ_G0014309.1 mouse_genomes_project 7 46704183 46705156 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087393.1 MGP_C57BL6NJ_G0033543.1 mouse_genomes_project 7 137238166 137258910 - MGP_C57BL6NJ_P0087393 Ctf2 protein_coding protein_coding MGP_C57BL6NJ_T0087394.1 MGP_C57BL6NJ_G0033543.1 mouse_genomes_project 7 137238166 137251023 - MGP_C57BL6NJ_P0087394 Ctf2 protein_coding protein_coding MGP_C57BL6NJ_T0086402.1 MGP_C57BL6NJ_G0033350.1 mouse_genomes_project 7 118407859 118476772 + MGP_C57BL6NJ_P0086402 Swap70 protein_coding protein_coding MGP_C57BL6NJ_T0100568.1 MGP_C57BL6NJ_G0038614.1 mouse_genomes_project 7 9865978 9866085 - Gm24414 snRNA snRNA MGP_C57BL6NJ_T0005392.1 MGP_C57BL6NJ_G0004581.1 mouse_genomes_project 7 83562422 83564627 + Gm9885 antisense antisense MGP_C57BL6NJ_T0005393.1 MGP_C57BL6NJ_G0004581.1 mouse_genomes_project 7 83562422 83564631 + Gm9885 antisense antisense MGP_C57BL6NJ_T0100619.1 MGP_C57BL6NJ_G0038665.1 mouse_genomes_project 7 132492844 132492947 - Gm23559 snRNA snRNA MGP_C57BL6NJ_T0081970.1 MGP_C57BL6NJ_G0032031.1 mouse_genomes_project 7 2257133 2258965 - MGP_C57BL6NJ_P0081970 Vmn1r56 protein_coding protein_coding MGP_C57BL6NJ_T0088198.1 MGP_C57BL6NJ_G0033732.1 mouse_genomes_project 7 152109310 152185786 + MGP_C57BL6NJ_P0088198 Ap2a2 protein_coding protein_coding MGP_C57BL6NJ_T0088199.1 MGP_C57BL6NJ_G0033732.1 mouse_genomes_project 7 152109345 152151540 + Ap2a2 protein_coding retained_intron MGP_C57BL6NJ_T0088200.1 MGP_C57BL6NJ_G0033732.1 mouse_genomes_project 7 152109667 152147240 + MGP_C57BL6NJ_P0088200 Ap2a2 protein_coding protein_coding MGP_C57BL6NJ_T0087276.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136658058 136658742 - Sept1 protein_coding retained_intron MGP_C57BL6NJ_T0087277.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136658374 136662018 - MGP_C57BL6NJ_P0087277 Sept1 protein_coding protein_coding MGP_C57BL6NJ_T0087278.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136658387 136662080 - MGP_C57BL6NJ_P0087278 Sept1 protein_coding protein_coding MGP_C57BL6NJ_T0087279.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136658582 136660648 - Sept1 protein_coding retained_intron MGP_C57BL6NJ_T0087280.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136659501 136661999 - MGP_C57BL6NJ_P0087280 Sept1 protein_coding protein_coding MGP_C57BL6NJ_T0087281.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136660336 136677289 - MGP_C57BL6NJ_P0087281 Sept1 protein_coding protein_coding MGP_C57BL6NJ_T0087282.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136660373 136662035 - Sept1 protein_coding retained_intron MGP_C57BL6NJ_T0087283.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136660580 136661840 - Sept1 protein_coding processed_transcript MGP_C57BL6NJ_T0087284.1 MGP_C57BL6NJ_G0033520.1 mouse_genomes_project 7 136677060 136677773 - Sept1 protein_coding retained_intron MGP_C57BL6NJ_T0082472.1 MGP_C57BL6NJ_G0032217.1 mouse_genomes_project 7 18160455 18167782 - MGP_C57BL6NJ_P0082472 Fosb protein_coding protein_coding MGP_C57BL6NJ_T0085986.1 MGP_C57BL6NJ_G0033100.1 mouse_genomes_project 7 109619335 109620414 - MGP_C57BL6NJ_P0085986 Olfr551 protein_coding protein_coding MGP_C57BL6NJ_T0087055.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025154 136049792 + Sgf29 protein_coding processed_transcript MGP_C57BL6NJ_T0087056.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025154 136058713 + MGP_C57BL6NJ_P0087056 Sgf29 protein_coding protein_coding MGP_C57BL6NJ_T0087057.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025157 136050738 + MGP_C57BL6NJ_P0087057 Sgf29 protein_coding protein_coding MGP_C57BL6NJ_T0087058.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025167 136049887 + Sgf29 protein_coding retained_intron MGP_C57BL6NJ_T0087059.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025192 136057669 + Sgf29 protein_coding retained_intron MGP_C57BL6NJ_T0087060.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136025247 136058027 + MGP_C57BL6NJ_P0087060 Sgf29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087061.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136044565 136058106 + MGP_C57BL6NJ_P0087061 Sgf29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087062.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136049580 136056476 + Sgf29 protein_coding retained_intron MGP_C57BL6NJ_T0087063.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136057364 136058180 + MGP_C57BL6NJ_P0087063 Sgf29 protein_coding protein_coding MGP_C57BL6NJ_T0087064.1 MGP_C57BL6NJ_G0033484.1 mouse_genomes_project 7 136057818 136058567 + Sgf29 protein_coding processed_transcript MGP_C57BL6NJ_T0016130.1 MGP_C57BL6NJ_G0014175.1 mouse_genomes_project 7 10482104 10483068 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011160.1 MGP_C57BL6NJ_G0009245.1 mouse_genomes_project 7 83007093 83007191 - Gm44358 miRNA miRNA MGP_C57BL6NJ_T0083567.1 MGP_C57BL6NJ_G0032498.1 mouse_genomes_project 7 30869716 30874001 - MGP_C57BL6NJ_P0083567 Ffar1 protein_coding protein_coding MGP_C57BL6NJ_T0087792.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144324303 144445362 - MGP_C57BL6NJ_P0087792 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087793.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144324748 144433444 - MGP_C57BL6NJ_P0087793 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087794.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144324761 144404986 - MGP_C57BL6NJ_P0087794 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087795.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144325300 144327327 - D7Ertd443e protein_coding retained_intron MGP_C57BL6NJ_T0087796.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144325300 144411916 - MGP_C57BL6NJ_P0087796 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087797.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144412552 144445365 - MGP_C57BL6NJ_P0087797 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087798.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144412673 144445359 - MGP_C57BL6NJ_P0087798 D7Ertd443e protein_coding protein_coding MGP_C57BL6NJ_T0087799.1 MGP_C57BL6NJ_G0033622.1 mouse_genomes_project 7 144419027 144454193 - D7Ertd443e protein_coding processed_transcript MGP_C57BL6NJ_T0009155.1 MGP_C57BL6NJ_G0007380.1 mouse_genomes_project 7 98968835 98972744 + Gm26981 lincRNA lincRNA MGP_C57BL6NJ_T0018900.1 MGP_C57BL6NJ_G0016094.1 mouse_genomes_project 7 152005614 152009578 - Gm10575 processed_transcript processed_transcript MGP_C57BL6NJ_T0018901.1 MGP_C57BL6NJ_G0016094.1 mouse_genomes_project 7 152005616 152011841 - Gm10575 processed_transcript processed_transcript MGP_C57BL6NJ_T0018902.1 MGP_C57BL6NJ_G0016094.1 mouse_genomes_project 7 152006053 152007976 - Gm10575 processed_transcript processed_transcript MGP_C57BL6NJ_T0087728.1 MGP_C57BL6NJ_G0033612.1 mouse_genomes_project 7 142903711 142943812 + MGP_C57BL6NJ_P0087728 Zranb1 protein_coding protein_coding MGP_C57BL6NJ_T0087729.1 MGP_C57BL6NJ_G0033612.1 mouse_genomes_project 7 142937574 142939482 + Zranb1 protein_coding retained_intron MGP_C57BL6NJ_T0085705.1 MGP_C57BL6NJ_G0033036.1 mouse_genomes_project 7 106346695 106349717 - MGP_C57BL6NJ_P0085705 Tpbgl protein_coding protein_coding MGP_C57BL6NJ_T0016277.1 MGP_C57BL6NJ_G0014322.1 mouse_genomes_project 7 60216906 60217765 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009094.1 MGP_C57BL6NJ_G0007340.1 mouse_genomes_project 7 75835817 75845293 + lincRNA lincRNA MGP_C57BL6NJ_T0005314.1 MGP_C57BL6NJ_G0004523.1 mouse_genomes_project 7 17814108 17814874 - Gm45058 antisense antisense MGP_C57BL6NJ_T0087009.1 MGP_C57BL6NJ_G0033477.1 mouse_genomes_project 7 135851575 135857070 + MGP_C57BL6NJ_P0087009 protein_coding protein_coding MGP_C57BL6NJ_T0088448.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155371322 155525157 - MGP_C57BL6NJ_P0088448 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0088449.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155371322 155525180 - MGP_C57BL6NJ_P0088449 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0088450.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155371326 155525206 - MGP_C57BL6NJ_P0088450 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0088451.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155378215 155393372 - Ano1 protein_coding retained_intron MGP_C57BL6NJ_T0088452.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155407935 155455535 - MGP_C57BL6NJ_P0088452 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0088453.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155436707 155538544 - MGP_C57BL6NJ_P0088453 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0088454.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155440295 155455532 - Ano1 protein_coding retained_intron MGP_C57BL6NJ_T0088455.1 MGP_C57BL6NJ_G0033783.1 mouse_genomes_project 7 155441801 155465022 - MGP_C57BL6NJ_P0088455 Ano1 protein_coding protein_coding MGP_C57BL6NJ_T0084930.1 MGP_C57BL6NJ_G0032849.1 mouse_genomes_project 7 75813172 75816965 - MGP_C57BL6NJ_P0084930 Gm10295 protein_coding protein_coding MGP_C57BL6NJ_T0086148.1 MGP_C57BL6NJ_G0033237.1 mouse_genomes_project 7 112902196 112903258 - MGP_C57BL6NJ_P0086148 Olfr690 protein_coding protein_coding MGP_C57BL6NJ_T0086336.1 MGP_C57BL6NJ_G0033330.1 mouse_genomes_project 7 117025177 117033712 + MGP_C57BL6NJ_P0086336 Eif3f protein_coding protein_coding MGP_C57BL6NJ_T0086337.1 MGP_C57BL6NJ_G0033330.1 mouse_genomes_project 7 117029155 117031237 + Eif3f protein_coding retained_intron MGP_C57BL6NJ_T0086338.1 MGP_C57BL6NJ_G0033330.1 mouse_genomes_project 7 117031068 117031769 + Eif3f protein_coding retained_intron MGP_C57BL6NJ_T0085542.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103502246 103628973 + MGP_C57BL6NJ_P0085542 Nars2 protein_coding protein_coding MGP_C57BL6NJ_T0085543.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103502262 103556620 + Nars2 protein_coding processed_transcript MGP_C57BL6NJ_T0085544.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103502303 103595710 + MGP_C57BL6NJ_P0085544 Nars2 protein_coding protein_coding MGP_C57BL6NJ_T0085545.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103579001 103627157 + MGP_C57BL6NJ_P0085545 Nars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085546.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103592669 103595935 + Nars2 protein_coding retained_intron MGP_C57BL6NJ_T0085547.1 MGP_C57BL6NJ_G0033001.1 mouse_genomes_project 7 103595072 103627187 + MGP_C57BL6NJ_P0085547 Nars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085309.1 MGP_C57BL6NJ_G0032913.1 mouse_genomes_project 7 86822136 86826143 - MGP_C57BL6NJ_P0085309 BC048679 protein_coding protein_coding MGP_C57BL6NJ_T0085310.1 MGP_C57BL6NJ_G0032913.1 mouse_genomes_project 7 86822136 86826143 - MGP_C57BL6NJ_P0085310 BC048679 protein_coding protein_coding MGP_C57BL6NJ_T0016131.1 MGP_C57BL6NJ_G0014176.1 mouse_genomes_project 7 10536109 10537557 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002391.1 MGP_C57BL6NJ_G0002281.1 mouse_genomes_project 7 77205960 77206461 + TEC TEC MGP_C57BL6NJ_T0087682.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141231129 141269354 + MGP_C57BL6NJ_P0087682 Acadsb protein_coding protein_coding MGP_C57BL6NJ_T0087683.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141234242 141267906 + MGP_C57BL6NJ_P0087683 Acadsb protein_coding protein_coding MGP_C57BL6NJ_T0087684.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141247300 141252854 + Acadsb protein_coding retained_intron MGP_C57BL6NJ_T0087685.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141247335 141251654 + Acadsb protein_coding retained_intron MGP_C57BL6NJ_T0087686.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141251447 141255006 + Acadsb protein_coding retained_intron MGP_C57BL6NJ_T0087687.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141252674 141269352 + Acadsb protein_coding retained_intron MGP_C57BL6NJ_T0087688.1 MGP_C57BL6NJ_G0033599.1 mouse_genomes_project 7 141257109 141260672 + Acadsb protein_coding retained_intron MGP_C57BL6NJ_T0016292.1 MGP_C57BL6NJ_G0014337.1 mouse_genomes_project 7 74903490 74904494 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016272.1 MGP_C57BL6NJ_G0014317.1 mouse_genomes_project 7 58836298 58836844 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103468.1 MGP_C57BL6NJ_G0041260.1 mouse_genomes_project 7 50528899 50529854 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081950.1 MGP_C57BL6NJ_G0032018.1 mouse_genomes_project 7 2047482 2050468 + MGP_C57BL6NJ_P0081950 Zfp524 protein_coding protein_coding MGP_C57BL6NJ_T0085997.1 MGP_C57BL6NJ_G0033111.1 mouse_genomes_project 7 109771987 109792578 - MGP_C57BL6NJ_P0085997 Olfr78 protein_coding protein_coding MGP_C57BL6NJ_T0085998.1 MGP_C57BL6NJ_G0033111.1 mouse_genomes_project 7 109771987 109792578 - MGP_C57BL6NJ_P0085998 Olfr78 protein_coding protein_coding MGP_C57BL6NJ_T0002432.1 MGP_C57BL6NJ_G0002321.1 mouse_genomes_project 7 126016771 126018672 + TEC TEC MGP_C57BL6NJ_T0002386.1 MGP_C57BL6NJ_G0002276.1 mouse_genomes_project 7 68224313 68224914 + TEC TEC MGP_C57BL6NJ_T0082624.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23225549 23240706 - MGP_C57BL6NJ_P0082624 Zfp111 protein_coding protein_coding MGP_C57BL6NJ_T0082625.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23228479 23235802 - MGP_C57BL6NJ_P0082625 Zfp111 protein_coding protein_coding MGP_C57BL6NJ_T0082626.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23229684 23244879 - MGP_C57BL6NJ_P0082626 Zfp111 protein_coding protein_coding MGP_C57BL6NJ_T0082627.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23231229 23240628 - Zfp111 protein_coding processed_transcript MGP_C57BL6NJ_T0082628.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23236538 23240684 - Zfp111 protein_coding retained_intron MGP_C57BL6NJ_T0082629.1 MGP_C57BL6NJ_G0032267.1 mouse_genomes_project 7 23237941 23244879 - Zfp111 protein_coding processed_transcript MGP_C57BL6NJ_T0002342.1 MGP_C57BL6NJ_G0002232.1 mouse_genomes_project 7 23756922 23757160 + TEC TEC MGP_C57BL6NJ_T0082884.1 MGP_C57BL6NJ_G0032328.1 mouse_genomes_project 7 25131176 25148273 - MGP_C57BL6NJ_P0082884 Cyp2s1 protein_coding protein_coding MGP_C57BL6NJ_T0082885.1 MGP_C57BL6NJ_G0032328.1 mouse_genomes_project 7 25131176 25148013 - MGP_C57BL6NJ_P0082885 Cyp2s1 protein_coding protein_coding MGP_C57BL6NJ_T0082886.1 MGP_C57BL6NJ_G0032328.1 mouse_genomes_project 7 25132849 25147918 - Cyp2s1 protein_coding retained_intron MGP_C57BL6NJ_T0082887.1 MGP_C57BL6NJ_G0032328.1 mouse_genomes_project 7 25138009 25146752 - MGP_C57BL6NJ_P0082887 Cyp2s1 protein_coding protein_coding MGP_C57BL6NJ_T0086279.1 MGP_C57BL6NJ_G0033281.1 mouse_genomes_project 7 114987443 114988391 + MGP_C57BL6NJ_P0086279 Olfr17 protein_coding protein_coding MGP_C57BL6NJ_T0085795.1 MGP_C57BL6NJ_G0033059.1 mouse_genomes_project 7 107616462 107684155 + MGP_C57BL6NJ_P0085795 Fam168a protein_coding protein_coding MGP_C57BL6NJ_T0009022.1 MGP_C57BL6NJ_G0007289.1 mouse_genomes_project 7 37302624 37305765 + Gm45143 lincRNA lincRNA MGP_C57BL6NJ_T0085870.1 MGP_C57BL6NJ_G0033073.1 mouse_genomes_project 7 108798058 108804668 - MGP_C57BL6NJ_P0085870 Folr2 protein_coding protein_coding MGP_C57BL6NJ_T0083682.1 MGP_C57BL6NJ_G0032518.1 mouse_genomes_project 7 31789151 31790481 + MGP_C57BL6NJ_P0083682 protein_coding protein_coding MGP_C57BL6NJ_T0100594.1 MGP_C57BL6NJ_G0038640.1 mouse_genomes_project 7 73828374 73828464 - Gm23815 snRNA snRNA MGP_C57BL6NJ_T0087499.1 MGP_C57BL6NJ_G0033565.1 mouse_genomes_project 7 137621387 137693833 + MGP_C57BL6NJ_P0087499 Itgam protein_coding protein_coding MGP_C57BL6NJ_T0087503.1 MGP_C57BL6NJ_G0033565.1 mouse_genomes_project 7 137683775 137692889 + MGP_C57BL6NJ_P0087503 Itgam protein_coding protein_coding MGP_C57BL6NJ_T0009120.1 MGP_C57BL6NJ_G0007362.1 mouse_genomes_project 7 79831226 79881476 + Gm44904 lincRNA lincRNA MGP_C57BL6NJ_T0087411.1 MGP_C57BL6NJ_G0033547.1 mouse_genomes_project 7 137309013 137328616 + MGP_C57BL6NJ_P0087411 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087412.1 MGP_C57BL6NJ_G0033547.1 mouse_genomes_project 7 137324057 137326836 + MGP_C57BL6NJ_P0087412 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086931.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135006511 135180375 + MGP_C57BL6NJ_P0086931 D430042O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0086932.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135006513 135018444 + D430042O09Rik protein_coding retained_intron MGP_C57BL6NJ_T0086933.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135006538 135180382 + MGP_C57BL6NJ_P0086933 D430042O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0086934.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135006587 135066762 + MGP_C57BL6NJ_P0086934 D430042O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0086935.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135090759 135167592 + D430042O09Rik protein_coding processed_transcript MGP_C57BL6NJ_T0086936.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135135268 135180375 + D430042O09Rik protein_coding retained_intron MGP_C57BL6NJ_T0086937.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135166277 135177834 + MGP_C57BL6NJ_P0086937 D430042O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0086938.1 MGP_C57BL6NJ_G0033465.1 mouse_genomes_project 7 135170866 135173571 + D430042O09Rik protein_coding retained_intron MGP_C57BL6NJ_T0085333.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87556818 87674564 + MGP_C57BL6NJ_P0085333 Sh3gl3 protein_coding protein_coding MGP_C57BL6NJ_T0085334.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557465 87659340 + Sh3gl3 protein_coding retained_intron MGP_C57BL6NJ_T0085335.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557479 87697850 + MGP_C57BL6NJ_P0085335 Sh3gl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085336.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557573 87697850 + MGP_C57BL6NJ_P0085336 Sh3gl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085337.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557598 87697849 + MGP_C57BL6NJ_P0085337 Sh3gl3 protein_coding protein_coding MGP_C57BL6NJ_T0085338.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557779 87674627 + MGP_C57BL6NJ_P0085338 Sh3gl3 protein_coding protein_coding MGP_C57BL6NJ_T0085339.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87557857 87558916 + Sh3gl3 protein_coding processed_transcript MGP_C57BL6NJ_T0085340.1 MGP_C57BL6NJ_G0032923.1 mouse_genomes_project 7 87660187 87697659 + MGP_C57BL6NJ_P0085340 Sh3gl3 protein_coding protein_coding MGP_C57BL6NJ_T0086063.1 MGP_C57BL6NJ_G0033174.1 mouse_genomes_project 7 111249956 111250922 + MGP_C57BL6NJ_P0086063 Olfr638 protein_coding protein_coding MGP_C57BL6NJ_T0005447.1 MGP_C57BL6NJ_G0004616.1 mouse_genomes_project 7 131023977 131031330 + Gm44987 antisense antisense MGP_C57BL6NJ_T0082365.1 MGP_C57BL6NJ_G0032181.1 mouse_genomes_project 7 16713582 16719467 + MGP_C57BL6NJ_P0082365 Ceacam12 protein_coding protein_coding MGP_C57BL6NJ_T0082366.1 MGP_C57BL6NJ_G0032181.1 mouse_genomes_project 7 16713592 16725640 + MGP_C57BL6NJ_P0082366 Ceacam12 protein_coding protein_coding MGP_C57BL6NJ_T0082367.1 MGP_C57BL6NJ_G0032181.1 mouse_genomes_project 7 16713644 16718081 + MGP_C57BL6NJ_P0082367 Ceacam12 protein_coding protein_coding MGP_C57BL6NJ_T0016164.1 MGP_C57BL6NJ_G0014209.1 mouse_genomes_project 7 18862804 18863377 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011137.1 MGP_C57BL6NJ_G0009222.1 mouse_genomes_project 7 65441793 65441862 - Mir344d-1 miRNA miRNA MGP_C57BL6NJ_T0086263.1 MGP_C57BL6NJ_G0033266.1 mouse_genomes_project 7 114662680 114663631 - MGP_C57BL6NJ_P0086263 Olfr700 protein_coding protein_coding MGP_C57BL6NJ_T0083100.1 MGP_C57BL6NJ_G0032390.1 mouse_genomes_project 7 28005052 28007097 + MGP_C57BL6NJ_P0083100 Rps16 protein_coding protein_coding MGP_C57BL6NJ_T0086008.1 MGP_C57BL6NJ_G0033121.1 mouse_genomes_project 7 110022550 110023489 + MGP_C57BL6NJ_P0086008 Olfr576 protein_coding protein_coding MGP_C57BL6NJ_T0086009.1 MGP_C57BL6NJ_G0033121.1 mouse_genomes_project 7 110022550 110035152 + MGP_C57BL6NJ_P0086009 Olfr576 protein_coding protein_coding MGP_C57BL6NJ_T0085283.1 MGP_C57BL6NJ_G0032907.1 mouse_genomes_project 7 86331803 86383510 + MGP_C57BL6NJ_P0085283 Alpk3 protein_coding protein_coding MGP_C57BL6NJ_T0085284.1 MGP_C57BL6NJ_G0032907.1 mouse_genomes_project 7 86372747 86373610 + Alpk3 protein_coding retained_intron MGP_C57BL6NJ_T0082334.1 MGP_C57BL6NJ_G0032168.1 mouse_genomes_project 7 15411142 15419751 - MGP_C57BL6NJ_P0082334 Calm3 protein_coding protein_coding MGP_C57BL6NJ_T0082335.1 MGP_C57BL6NJ_G0032168.1 mouse_genomes_project 7 15411164 15412936 - MGP_C57BL6NJ_P0082335 Calm3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082336.1 MGP_C57BL6NJ_G0032168.1 mouse_genomes_project 7 15411694 15412974 - MGP_C57BL6NJ_P0082336 Calm3 protein_coding protein_coding MGP_C57BL6NJ_T0082337.1 MGP_C57BL6NJ_G0032168.1 mouse_genomes_project 7 15412914 15419466 - Calm3 protein_coding processed_transcript MGP_C57BL6NJ_T0082180.1 MGP_C57BL6NJ_G0032125.1 mouse_genomes_project 7 12447597 12449719 - MGP_C57BL6NJ_P0082180 Obox8 protein_coding protein_coding MGP_C57BL6NJ_T0103356.1 MGP_C57BL6NJ_G0041149.1 mouse_genomes_project 7 12681674 12682194 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002462.1 MGP_C57BL6NJ_G0002351.1 mouse_genomes_project 7 153772437 153772496 + TEC TEC MGP_C57BL6NJ_T0016350.1 MGP_C57BL6NJ_G0014395.1 mouse_genomes_project 7 117495870 117497268 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083113.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28047654 28054084 + MGP_C57BL6NJ_P0083113 Paf1 protein_coding protein_coding MGP_C57BL6NJ_T0083114.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28047665 28048751 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083115.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28047744 28054079 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083116.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28047864 28050481 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083117.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28048161 28050399 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083118.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28049466 28050503 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083119.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28050128 28050783 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083120.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28050528 28053439 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083121.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28051354 28051908 + Paf1 protein_coding retained_intron MGP_C57BL6NJ_T0083122.1 MGP_C57BL6NJ_G0032394.1 mouse_genomes_project 7 28053129 28053756 + Paf1 protein_coding processed_transcript MGP_C57BL6NJ_T0087593.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139255896 139299137 + MGP_C57BL6NJ_P0087593 Wdr11 protein_coding protein_coding MGP_C57BL6NJ_T0087594.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139255941 139289039 + Wdr11 protein_coding retained_intron MGP_C57BL6NJ_T0087595.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139255951 139275701 + Wdr11 protein_coding retained_intron MGP_C57BL6NJ_T0087596.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139257101 139296254 + MGP_C57BL6NJ_P0087596 Wdr11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087597.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139268476 139271207 + Wdr11 protein_coding processed_transcript MGP_C57BL6NJ_T0087598.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139269967 139299135 + Wdr11 protein_coding retained_intron MGP_C57BL6NJ_T0087599.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139271205 139277451 + MGP_C57BL6NJ_P0087599 Wdr11 protein_coding protein_coding MGP_C57BL6NJ_T0087600.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139288454 139299133 + Wdr11 protein_coding retained_intron MGP_C57BL6NJ_T0087601.1 MGP_C57BL6NJ_G0033582.1 mouse_genomes_project 7 139292431 139297070 + MGP_C57BL6NJ_P0087601 Wdr11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087893.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150397617 150413053 - Adam8 protein_coding retained_intron MGP_C57BL6NJ_T0087894.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150397617 150408934 - Adam8 protein_coding retained_intron MGP_C57BL6NJ_T0087895.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150397617 150413053 - MGP_C57BL6NJ_P0087895 Adam8 protein_coding protein_coding MGP_C57BL6NJ_T0087896.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150397617 150413039 - MGP_C57BL6NJ_P0087896 Adam8 protein_coding protein_coding MGP_C57BL6NJ_T0087897.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150398079 150399054 - Adam8 protein_coding processed_transcript MGP_C57BL6NJ_T0087898.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150404353 150413053 - MGP_C57BL6NJ_P0087898 Adam8 protein_coding protein_coding MGP_C57BL6NJ_T0087899.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150408153 150408930 - Adam8 protein_coding processed_transcript MGP_C57BL6NJ_T0087900.1 MGP_C57BL6NJ_G0033651.1 mouse_genomes_project 7 150409918 150412999 - MGP_C57BL6NJ_P0087900 Adam8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087291.1 MGP_C57BL6NJ_G0033523.1 mouse_genomes_project 7 136706216 136709967 - MGP_C57BL6NJ_P0087291 Dctpp1 protein_coding protein_coding MGP_C57BL6NJ_T0002464.1 MGP_C57BL6NJ_G0002353.1 mouse_genomes_project 7 154007650 154009052 + TEC TEC MGP_C57BL6NJ_T0002451.1 MGP_C57BL6NJ_G0002340.1 mouse_genomes_project 7 136725219 136727271 + TEC TEC MGP_C57BL6NJ_T0002360.1 MGP_C57BL6NJ_G0002250.1 mouse_genomes_project 7 41669103 41672380 - TEC TEC MGP_C57BL6NJ_T0082261.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14696996 14711224 - MGP_C57BL6NJ_P0082261 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082262.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14697002 14698732 - Ccdc9 protein_coding retained_intron MGP_C57BL6NJ_T0082263.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14697005 14711268 - MGP_C57BL6NJ_P0082263 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082264.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14698424 14709537 - MGP_C57BL6NJ_P0082264 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082265.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14698437 14705175 - Ccdc9 protein_coding retained_intron MGP_C57BL6NJ_T0082266.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14698830 14701345 - MGP_C57BL6NJ_P0082266 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082267.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14698975 14699658 - Ccdc9 protein_coding retained_intron MGP_C57BL6NJ_T0082268.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14699554 14705644 - Ccdc9 protein_coding retained_intron MGP_C57BL6NJ_T0082269.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14705103 14706284 - Ccdc9 protein_coding processed_transcript MGP_C57BL6NJ_T0082270.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14706987 14711258 - MGP_C57BL6NJ_P0082270 Ccdc9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082271.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14706996 14710014 - MGP_C57BL6NJ_P0082271 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082272.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14707047 14711252 - MGP_C57BL6NJ_P0082272 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0082273.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14707168 14711251 - Ccdc9 protein_coding retained_intron MGP_C57BL6NJ_T0082274.1 MGP_C57BL6NJ_G0032151.1 mouse_genomes_project 7 14707301 14710503 - MGP_C57BL6NJ_P0082274 Ccdc9 protein_coding protein_coding MGP_C57BL6NJ_T0084306.1 MGP_C57BL6NJ_G0032697.1 mouse_genomes_project 7 47849534 47853165 + MGP_C57BL6NJ_P0084306 Hrc protein_coding protein_coding MGP_C57BL6NJ_T0100579.1 MGP_C57BL6NJ_G0038625.1 mouse_genomes_project 7 39176298 39176404 - Gm22302 snRNA snRNA MGP_C57BL6NJ_T0088386.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154229667 154274308 - MGP_C57BL6NJ_P0088386 Cars protein_coding protein_coding MGP_C57BL6NJ_T0088387.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154230144 154274274 - MGP_C57BL6NJ_P0088387 Cars protein_coding protein_coding MGP_C57BL6NJ_T0088388.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154234201 154240807 - Cars protein_coding processed_transcript MGP_C57BL6NJ_T0088389.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154237047 154241573 - Cars protein_coding retained_intron MGP_C57BL6NJ_T0088390.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154241383 154242650 - Cars protein_coding processed_transcript MGP_C57BL6NJ_T0088391.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154242498 154247060 - Cars protein_coding retained_intron MGP_C57BL6NJ_T0088392.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154258380 154270967 - Cars protein_coding processed_transcript MGP_C57BL6NJ_T0088393.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154259781 154273899 - Cars protein_coding processed_transcript MGP_C57BL6NJ_T0088394.1 MGP_C57BL6NJ_G0033769.1 mouse_genomes_project 7 154265056 154274249 - Cars protein_coding processed_transcript MGP_C57BL6NJ_T0081852.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1470754 1472212 - Tnni3 protein_coding retained_intron MGP_C57BL6NJ_T0081853.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1470754 1475316 - MGP_C57BL6NJ_P0081853 Tnni3 protein_coding protein_coding MGP_C57BL6NJ_T0081854.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1470757 1473345 - Tnni3 protein_coding retained_intron MGP_C57BL6NJ_T0081855.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1473215 1475582 - MGP_C57BL6NJ_P0081855 Tnni3 protein_coding protein_coding MGP_C57BL6NJ_T0081856.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1473254 1477017 - MGP_C57BL6NJ_P0081856 Tnni3 protein_coding protein_coding MGP_C57BL6NJ_T0081857.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1473819 1475230 - Tnni3 protein_coding retained_intron MGP_C57BL6NJ_T0081858.1 MGP_C57BL6NJ_G0031991.1 mouse_genomes_project 7 1474128 1475280 - Tnni3 protein_coding retained_intron MGP_C57BL6NJ_T0082010.1 MGP_C57BL6NJ_G0032047.1 mouse_genomes_project 7 3665352 3684110 + MGP_C57BL6NJ_P0082010 Zfp28 protein_coding protein_coding MGP_C57BL6NJ_T0086065.1 MGP_C57BL6NJ_G0033176.1 mouse_genomes_project 7 111268470 111269415 - MGP_C57BL6NJ_P0086065 Olfr640 protein_coding protein_coding MGP_C57BL6NJ_T0002424.1 MGP_C57BL6NJ_G0002313.1 mouse_genomes_project 7 85270859 85272690 - TEC TEC MGP_C57BL6NJ_T0086094.1 MGP_C57BL6NJ_G0033194.1 mouse_genomes_project 7 111638915 111651643 + MGP_C57BL6NJ_P0086094 protein_coding protein_coding MGP_C57BL6NJ_T0087388.1 MGP_C57BL6NJ_G0033542.1 mouse_genomes_project 7 137231993 137238253 + MGP_C57BL6NJ_P0087388 Ctf1 protein_coding protein_coding MGP_C57BL6NJ_T0087389.1 MGP_C57BL6NJ_G0033542.1 mouse_genomes_project 7 137232194 137237391 + MGP_C57BL6NJ_P0087389 Ctf1 protein_coding protein_coding MGP_C57BL6NJ_T0087390.1 MGP_C57BL6NJ_G0033542.1 mouse_genomes_project 7 137232201 137237651 + MGP_C57BL6NJ_P0087390 Ctf1 protein_coding protein_coding MGP_C57BL6NJ_T0087391.1 MGP_C57BL6NJ_G0033542.1 mouse_genomes_project 7 137232557 137237087 + Ctf1 protein_coding processed_transcript MGP_C57BL6NJ_T0087392.1 MGP_C57BL6NJ_G0033542.1 mouse_genomes_project 7 137232814 137237100 + Ctf1 protein_coding processed_transcript MGP_C57BL6NJ_T0086272.1 MGP_C57BL6NJ_G0033274.1 mouse_genomes_project 7 114801964 114802888 - MGP_C57BL6NJ_P0086272 Olfr709-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0009193.1 MGP_C57BL6NJ_G0007403.1 mouse_genomes_project 7 125857605 125909564 + Gm45152 lincRNA lincRNA MGP_C57BL6NJ_T0084560.1 MGP_C57BL6NJ_G0032758.1 mouse_genomes_project 7 49603017 49645156 - MGP_C57BL6NJ_P0084560 Uevld protein_coding protein_coding MGP_C57BL6NJ_T0083310.1 MGP_C57BL6NJ_G0032438.1 mouse_genomes_project 7 29689040 29712612 - MGP_C57BL6NJ_P0083310 Zfp940 protein_coding protein_coding MGP_C57BL6NJ_T0083311.1 MGP_C57BL6NJ_G0032438.1 mouse_genomes_project 7 29700536 29712584 - Zfp940 protein_coding retained_intron MGP_C57BL6NJ_T0083312.1 MGP_C57BL6NJ_G0032438.1 mouse_genomes_project 7 29701222 29712591 - MGP_C57BL6NJ_P0083312 Zfp940 protein_coding protein_coding MGP_C57BL6NJ_T0083313.1 MGP_C57BL6NJ_G0032438.1 mouse_genomes_project 7 29708237 29712385 - Zfp940 protein_coding processed_transcript MGP_C57BL6NJ_T0016396.1 MGP_C57BL6NJ_G0014441.1 mouse_genomes_project 7 154270653 154271209 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103466.1 MGP_C57BL6NJ_G0041258.1 mouse_genomes_project 7 50477121 50477835 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016128.1 MGP_C57BL6NJ_G0014173.1 mouse_genomes_project 7 3692374 3692584 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083173.1 MGP_C57BL6NJ_G0032410.1 mouse_genomes_project 7 28529694 28545110 + MGP_C57BL6NJ_P0083173 Rinl protein_coding protein_coding MGP_C57BL6NJ_T0086845.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131351058 131716173 + MGP_C57BL6NJ_P0086845 Prkcb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086846.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131351604 131710458 + MGP_C57BL6NJ_P0086846 Prkcb protein_coding protein_coding MGP_C57BL6NJ_T0086847.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131351616 131716176 + MGP_C57BL6NJ_P0086847 Prkcb protein_coding protein_coding MGP_C57BL6NJ_T0086848.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131352335 131501584 + Prkcb protein_coding processed_transcript MGP_C57BL6NJ_T0086849.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131490871 131537114 + Prkcb protein_coding processed_transcript MGP_C57BL6NJ_T0086850.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131675435 131678229 + Prkcb protein_coding retained_intron MGP_C57BL6NJ_T0086851.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131681466 131709881 + Prkcb protein_coding processed_transcript MGP_C57BL6NJ_T0086852.1 MGP_C57BL6NJ_G0033450.1 mouse_genomes_project 7 131715232 131716176 + Prkcb protein_coding retained_intron MGP_C57BL6NJ_T0082707.1 MGP_C57BL6NJ_G0032288.1 mouse_genomes_project 7 23806662 23827382 + MGP_C57BL6NJ_P0082707 protein_coding protein_coding MGP_C57BL6NJ_T0082754.1 MGP_C57BL6NJ_G0032299.1 mouse_genomes_project 7 24182993 24211627 - MGP_C57BL6NJ_P0082754 Atp1a3 protein_coding protein_coding MGP_C57BL6NJ_T0082755.1 MGP_C57BL6NJ_G0032299.1 mouse_genomes_project 7 24182993 24211690 - MGP_C57BL6NJ_P0082755 Atp1a3 protein_coding protein_coding MGP_C57BL6NJ_T0082756.1 MGP_C57BL6NJ_G0032299.1 mouse_genomes_project 7 24182996 24211675 - MGP_C57BL6NJ_P0082756 Atp1a3 protein_coding protein_coding MGP_C57BL6NJ_T0082757.1 MGP_C57BL6NJ_G0032299.1 mouse_genomes_project 7 24198093 24211639 - Atp1a3 protein_coding retained_intron MGP_C57BL6NJ_T0082758.1 MGP_C57BL6NJ_G0032299.1 mouse_genomes_project 7 24206194 24211689 - Atp1a3 protein_coding retained_intron MGP_C57BL6NJ_T0098896.1 MGP_C57BL6NJ_G0036960.1 mouse_genomes_project 7 121291749 121293176 + pseudogene pseudogene MGP_C57BL6NJ_T0085744.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107171016 107277917 + MGP_C57BL6NJ_P0085744 C2cd3 protein_coding protein_coding MGP_C57BL6NJ_T0085745.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107171016 107278606 + MGP_C57BL6NJ_P0085745 C2cd3 protein_coding protein_coding MGP_C57BL6NJ_T0085746.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107171029 107231810 + MGP_C57BL6NJ_P0085746 C2cd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085747.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107171064 107215648 + C2cd3 protein_coding retained_intron MGP_C57BL6NJ_T0085748.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107203306 107262897 + MGP_C57BL6NJ_P0085748 C2cd3 protein_coding protein_coding MGP_C57BL6NJ_T0085749.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107228960 107231536 + C2cd3 protein_coding retained_intron MGP_C57BL6NJ_T0085750.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107237577 107240751 + MGP_C57BL6NJ_P0085750 C2cd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085751.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107238605 107278608 + MGP_C57BL6NJ_P0085751 C2cd3 protein_coding protein_coding MGP_C57BL6NJ_T0085752.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107251808 107253212 + C2cd3 protein_coding retained_intron MGP_C57BL6NJ_T0085753.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107257260 107263286 + MGP_C57BL6NJ_P0085753 C2cd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085754.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107259793 107263245 + C2cd3 protein_coding retained_intron MGP_C57BL6NJ_T0085755.1 MGP_C57BL6NJ_G0033051.1 mouse_genomes_project 7 107272666 107278608 + MGP_C57BL6NJ_P0085755 C2cd3 protein_coding protein_coding MGP_C57BL6NJ_T0088004.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151424269 151430535 + MGP_C57BL6NJ_P0088004 Athl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088005.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151424444 151430537 + Athl1 protein_coding retained_intron MGP_C57BL6NJ_T0088006.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151424449 151425991 + Athl1 protein_coding processed_transcript MGP_C57BL6NJ_T0088007.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151424459 151430543 + MGP_C57BL6NJ_P0088007 Athl1 protein_coding protein_coding MGP_C57BL6NJ_T0088008.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151425188 151429723 + MGP_C57BL6NJ_P0088008 Athl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088009.1 MGP_C57BL6NJ_G0033695.1 mouse_genomes_project 7 151425414 151430539 + MGP_C57BL6NJ_P0088009 Athl1 protein_coding protein_coding MGP_C57BL6NJ_T0088186.1 MGP_C57BL6NJ_G0033730.1 mouse_genomes_project 7 152019639 152036792 + MGP_C57BL6NJ_P0088186 Tspan4 protein_coding protein_coding MGP_C57BL6NJ_T0088187.1 MGP_C57BL6NJ_G0033730.1 mouse_genomes_project 7 152019642 152036805 + MGP_C57BL6NJ_P0088187 Tspan4 protein_coding protein_coding MGP_C57BL6NJ_T0088188.1 MGP_C57BL6NJ_G0033730.1 mouse_genomes_project 7 152019865 152034609 + MGP_C57BL6NJ_P0088188 Tspan4 protein_coding protein_coding MGP_C57BL6NJ_T0088189.1 MGP_C57BL6NJ_G0033730.1 mouse_genomes_project 7 152027214 152037942 + MGP_C57BL6NJ_P0088189 Tspan4 protein_coding protein_coding MGP_C57BL6NJ_T0088190.1 MGP_C57BL6NJ_G0033730.1 mouse_genomes_project 7 152036477 152037949 + Tspan4 protein_coding retained_intron MGP_C57BL6NJ_T0002363.1 MGP_C57BL6NJ_G0002253.1 mouse_genomes_project 7 45655744 45657661 + TEC TEC MGP_C57BL6NJ_T0087116.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136178622 136185253 - MGP_C57BL6NJ_P0087116 Ppp4c protein_coding protein_coding MGP_C57BL6NJ_T0087117.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136178624 136185097 - MGP_C57BL6NJ_P0087117 Ppp4c protein_coding protein_coding MGP_C57BL6NJ_T0087118.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136178915 136181167 - MGP_C57BL6NJ_P0087118 Ppp4c protein_coding protein_coding MGP_C57BL6NJ_T0087119.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136178985 136180096 - MGP_C57BL6NJ_P0087119 Ppp4c protein_coding protein_coding MGP_C57BL6NJ_T0087120.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136179045 136185250 - MGP_C57BL6NJ_P0087120 Ppp4c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087121.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136179976 136181801 - MGP_C57BL6NJ_P0087121 Ppp4c protein_coding protein_coding MGP_C57BL6NJ_T0087122.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136180224 136184904 - MGP_C57BL6NJ_P0087122 Ppp4c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087123.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136180327 136181774 - Ppp4c protein_coding retained_intron MGP_C57BL6NJ_T0087124.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136180420 136185223 - Ppp4c protein_coding retained_intron MGP_C57BL6NJ_T0087125.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136183269 136185253 - Ppp4c protein_coding retained_intron MGP_C57BL6NJ_T0087126.1 MGP_C57BL6NJ_G0033493.1 mouse_genomes_project 7 136183293 136185239 - Ppp4c protein_coding retained_intron MGP_C57BL6NJ_T0009021.1 MGP_C57BL6NJ_G0007288.1 mouse_genomes_project 7 37029681 37030992 + Gm28514 lincRNA lincRNA MGP_C57BL6NJ_T0087783.1 MGP_C57BL6NJ_G0033620.1 mouse_genomes_project 7 143797452 143915964 + MGP_C57BL6NJ_P0087783 Fank1 protein_coding protein_coding MGP_C57BL6NJ_T0087784.1 MGP_C57BL6NJ_G0033620.1 mouse_genomes_project 7 143797482 143911384 + MGP_C57BL6NJ_P0087784 Fank1 protein_coding protein_coding MGP_C57BL6NJ_T0087785.1 MGP_C57BL6NJ_G0033620.1 mouse_genomes_project 7 143797533 143915297 + MGP_C57BL6NJ_P0087785 Fank1 protein_coding protein_coding MGP_C57BL6NJ_T0100572.1 MGP_C57BL6NJ_G0038618.1 mouse_genomes_project 7 15450719 15450826 - Gm25815 snRNA snRNA MGP_C57BL6NJ_T0016241.1 MGP_C57BL6NJ_G0014286.1 mouse_genomes_project 7 43095326 43095554 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087346.1 MGP_C57BL6NJ_G0033535.1 mouse_genomes_project 7 137020372 137068753 + MGP_C57BL6NJ_P0087346 Gm42715 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087348.1 MGP_C57BL6NJ_G0033535.1 mouse_genomes_project 7 137061580 137064947 + MGP_C57BL6NJ_P0087348 Gm42715 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084813.1 MGP_C57BL6NJ_G0032827.1 mouse_genomes_project 7 69736297 69778651 + Tarsl2 protein_coding retained_intron MGP_C57BL6NJ_T0084814.1 MGP_C57BL6NJ_G0032827.1 mouse_genomes_project 7 69736297 69786928 + MGP_C57BL6NJ_P0084814 Tarsl2 protein_coding protein_coding MGP_C57BL6NJ_T0084815.1 MGP_C57BL6NJ_G0032827.1 mouse_genomes_project 7 69750411 69753122 + Tarsl2 protein_coding retained_intron MGP_C57BL6NJ_T0084816.1 MGP_C57BL6NJ_G0032827.1 mouse_genomes_project 7 69770292 69784919 + Tarsl2 protein_coding processed_transcript MGP_C57BL6NJ_T0086479.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120740703 120904842 + MGP_C57BL6NJ_P0086479 Parva protein_coding protein_coding MGP_C57BL6NJ_T0086480.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120740904 120906906 + MGP_C57BL6NJ_P0086480 Parva protein_coding protein_coding MGP_C57BL6NJ_T0086481.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120741103 120864599 + MGP_C57BL6NJ_P0086481 Parva protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086482.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120811725 120858171 + Parva protein_coding processed_transcript MGP_C57BL6NJ_T0086483.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120830358 120904183 + MGP_C57BL6NJ_P0086483 Parva protein_coding protein_coding MGP_C57BL6NJ_T0086484.1 MGP_C57BL6NJ_G0033364.1 mouse_genomes_project 7 120883259 120893723 + Parva protein_coding processed_transcript MGP_C57BL6NJ_T0081874.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1638730 1667051 - MGP_C57BL6NJ_P0081874 Hspbp1 protein_coding protein_coding MGP_C57BL6NJ_T0081875.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1640343 1642813 - MGP_C57BL6NJ_P0081875 Hspbp1 protein_coding protein_coding MGP_C57BL6NJ_T0081876.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1642383 1642978 - Hspbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0081877.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1642790 1666977 - MGP_C57BL6NJ_P0081877 Hspbp1 protein_coding protein_coding MGP_C57BL6NJ_T0081878.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1657786 1666644 - MGP_C57BL6NJ_P0081878 Hspbp1 protein_coding protein_coding MGP_C57BL6NJ_T0081879.1 MGP_C57BL6NJ_G0031997.1 mouse_genomes_project 7 1657786 1666964 - MGP_C57BL6NJ_P0081879 Hspbp1 protein_coding protein_coding MGP_C57BL6NJ_T0016274.1 MGP_C57BL6NJ_G0014319.1 mouse_genomes_project 7 59281988 59282698 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084337.1 MGP_C57BL6NJ_G0032704.1 mouse_genomes_project 7 47948310 47964549 - MGP_C57BL6NJ_P0084337 Ruvbl2 protein_coding protein_coding MGP_C57BL6NJ_T0084338.1 MGP_C57BL6NJ_G0032704.1 mouse_genomes_project 7 47948356 47961082 - MGP_C57BL6NJ_P0084338 Ruvbl2 protein_coding protein_coding MGP_C57BL6NJ_T0084339.1 MGP_C57BL6NJ_G0032704.1 mouse_genomes_project 7 47951409 47961168 - MGP_C57BL6NJ_P0084339 Ruvbl2 protein_coding protein_coding MGP_C57BL6NJ_T0102550.1 MGP_C57BL6NJ_G0040392.1 mouse_genomes_project 7 12663643 12796413 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102551.1 MGP_C57BL6NJ_G0040392.1 mouse_genomes_project 7 12694272 12781891 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0084044.1 MGP_C57BL6NJ_G0032630.1 mouse_genomes_project 7 46371644 46377250 + MGP_C57BL6NJ_P0084044 Klk1b27 protein_coding protein_coding MGP_C57BL6NJ_T0016301.1 MGP_C57BL6NJ_G0014346.1 mouse_genomes_project 7 80174968 80175172 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002366.1 MGP_C57BL6NJ_G0002256.1 mouse_genomes_project 7 46719057 46719214 + TEC TEC MGP_C57BL6NJ_T0087937.1 MGP_C57BL6NJ_G0033663.1 mouse_genomes_project 7 150602358 150603414 + MGP_C57BL6NJ_P0087937 Olfr523 protein_coding protein_coding MGP_C57BL6NJ_T0083504.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30538873 30558742 - MGP_C57BL6NJ_P0083504 Kmt2b protein_coding protein_coding MGP_C57BL6NJ_T0083505.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30538873 30558733 - MGP_C57BL6NJ_P0083505 Kmt2b protein_coding protein_coding MGP_C57BL6NJ_T0083506.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30538875 30555356 - MGP_C57BL6NJ_P0083506 Kmt2b protein_coding protein_coding MGP_C57BL6NJ_T0083507.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30539768 30540680 - Kmt2b protein_coding retained_intron MGP_C57BL6NJ_T0083508.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30543184 30544190 - Kmt2b protein_coding retained_intron MGP_C57BL6NJ_T0083509.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30545588 30547180 - Kmt2b protein_coding processed_transcript MGP_C57BL6NJ_T0083510.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30547045 30549010 - Kmt2b protein_coding processed_transcript MGP_C57BL6NJ_T0083511.1 MGP_C57BL6NJ_G0032481.1 mouse_genomes_project 7 30554296 30555090 - Kmt2b protein_coding processed_transcript MGP_C57BL6NJ_T0083986.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45701153 45714918 - MGP_C57BL6NJ_P0083986 4931406B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0083987.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45702845 45714612 - MGP_C57BL6NJ_P0083987 4931406B18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083988.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45703591 45714907 - MGP_C57BL6NJ_P0083988 4931406B18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083989.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45705637 45713196 - MGP_C57BL6NJ_P0083989 4931406B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0083990.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45706720 45714913 - 4931406B18Rik protein_coding retained_intron MGP_C57BL6NJ_T0083991.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45707368 45714920 - MGP_C57BL6NJ_P0083991 4931406B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0083992.1 MGP_C57BL6NJ_G0032603.1 mouse_genomes_project 7 45710212 45714674 - MGP_C57BL6NJ_P0083992 4931406B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0103452.1 MGP_C57BL6NJ_G0041244.1 mouse_genomes_project 7 46443203 46445750 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086327.1 MGP_C57BL6NJ_G0033322.1 mouse_genomes_project 7 116781350 116782406 + MGP_C57BL6NJ_P0086327 Olfr512 protein_coding protein_coding MGP_C57BL6NJ_T0011150.1 MGP_C57BL6NJ_G0009235.1 mouse_genomes_project 7 65734226 65734306 - Mir344-2 miRNA miRNA MGP_C57BL6NJ_T0086988.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135790682 135809153 + Rabep2 protein_coding retained_intron MGP_C57BL6NJ_T0086989.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135791022 135799389 + Rabep2 protein_coding retained_intron MGP_C57BL6NJ_T0086990.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135791055 135809161 + MGP_C57BL6NJ_P0086990 Rabep2 protein_coding protein_coding MGP_C57BL6NJ_T0086991.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135791305 135801672 + MGP_C57BL6NJ_P0086991 Rabep2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086992.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135791351 135801663 + MGP_C57BL6NJ_P0086992 Rabep2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086993.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135801431 135801995 + Rabep2 protein_coding retained_intron MGP_C57BL6NJ_T0086994.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135803548 135807936 + Rabep2 protein_coding retained_intron MGP_C57BL6NJ_T0086995.1 MGP_C57BL6NJ_G0033473.1 mouse_genomes_project 7 135808051 135812497 + Rabep2 protein_coding retained_intron MGP_C57BL6NJ_T0085124.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85253439 85275448 - MGP_C57BL6NJ_P0085124 Idh2 protein_coding protein_coding MGP_C57BL6NJ_T0085125.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85253443 85275388 - MGP_C57BL6NJ_P0085125 Idh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085126.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85253622 85256995 - Idh2 protein_coding retained_intron MGP_C57BL6NJ_T0085127.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85253636 85254621 - Idh2 protein_coding retained_intron MGP_C57BL6NJ_T0085128.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85253652 85275360 - MGP_C57BL6NJ_P0085128 Idh2 protein_coding protein_coding MGP_C57BL6NJ_T0085129.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85254619 85259467 - MGP_C57BL6NJ_P0085129 Idh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085130.1 MGP_C57BL6NJ_G0032885.1 mouse_genomes_project 7 85256757 85257725 - Idh2 protein_coding retained_intron MGP_C57BL6NJ_T0086245.1 MGP_C57BL6NJ_G0033255.1 mouse_genomes_project 7 113374585 113381899 - MGP_C57BL6NJ_P0086245 Tpp1 protein_coding protein_coding MGP_C57BL6NJ_T0016207.1 MGP_C57BL6NJ_G0014252.1 mouse_genomes_project 7 34219513 34384035 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081769.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074645 1080823 + Ttyh1 protein_coding processed_transcript MGP_C57BL6NJ_T0081770.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074767 1090183 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081771.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074767 1090581 + MGP_C57BL6NJ_P0081771 Ttyh1 protein_coding protein_coding MGP_C57BL6NJ_T0081772.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074770 1091942 + MGP_C57BL6NJ_P0081772 Ttyh1 protein_coding protein_coding MGP_C57BL6NJ_T0081773.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074793 1080854 + Ttyh1 protein_coding processed_transcript MGP_C57BL6NJ_T0081774.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074822 1090567 + MGP_C57BL6NJ_P0081774 Ttyh1 protein_coding protein_coding MGP_C57BL6NJ_T0081775.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074825 1080863 + MGP_C57BL6NJ_P0081775 Ttyh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081776.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074859 1083500 + MGP_C57BL6NJ_P0081776 Ttyh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081777.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1074991 1090564 + MGP_C57BL6NJ_P0081777 Ttyh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081778.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1075457 1080795 + Ttyh1 protein_coding processed_transcript MGP_C57BL6NJ_T0081779.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1077383 1090641 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081780.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1079723 1089473 + MGP_C57BL6NJ_P0081780 Ttyh1 protein_coding protein_coding MGP_C57BL6NJ_T0081781.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1080901 1088653 + Ttyh1 protein_coding processed_transcript MGP_C57BL6NJ_T0081782.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1083460 1085354 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081783.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1084480 1088431 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081784.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1085853 1087124 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081785.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1086371 1087268 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0081786.1 MGP_C57BL6NJ_G0031980.1 mouse_genomes_project 7 1088263 1089206 + Ttyh1 protein_coding retained_intron MGP_C57BL6NJ_T0082399.1 MGP_C57BL6NJ_G0032197.1 mouse_genomes_project 7 17813949 17815512 + MGP_C57BL6NJ_P0082399 Nanos2 protein_coding protein_coding MGP_C57BL6NJ_T0016132.1 MGP_C57BL6NJ_G0014177.1 mouse_genomes_project 7 10653882 10654869 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088265.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153043547 153046150 + MGP_C57BL6NJ_P0088265 Tnni2 protein_coding protein_coding MGP_C57BL6NJ_T0088266.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153043555 153045776 + MGP_C57BL6NJ_P0088266 Tnni2 protein_coding protein_coding MGP_C57BL6NJ_T0088267.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153044069 153046108 + MGP_C57BL6NJ_P0088267 Tnni2 protein_coding protein_coding MGP_C57BL6NJ_T0088268.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153044647 153046148 + Tnni2 protein_coding retained_intron MGP_C57BL6NJ_T0088269.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153044719 153045599 + Tnni2 protein_coding retained_intron MGP_C57BL6NJ_T0088270.1 MGP_C57BL6NJ_G0033750.1 mouse_genomes_project 7 153044910 153046145 + MGP_C57BL6NJ_P0088270 Tnni2 protein_coding protein_coding MGP_C57BL6NJ_T0084405.1 MGP_C57BL6NJ_G0032720.1 mouse_genomes_project 7 48202760 48222852 - MGP_C57BL6NJ_P0084405 Fut2 protein_coding protein_coding MGP_C57BL6NJ_T0002337.1 MGP_C57BL6NJ_G0002227.1 mouse_genomes_project 7 15373883 15375545 - TEC TEC MGP_C57BL6NJ_T0085981.1 MGP_C57BL6NJ_G0033096.1 mouse_genomes_project 7 109562726 109565837 + MGP_C57BL6NJ_P0085981 Olfr547 protein_coding protein_coding MGP_C57BL6NJ_T0009027.1 MGP_C57BL6NJ_G0007294.1 mouse_genomes_project 7 38606822 38612783 + Gm28077 lincRNA lincRNA MGP_C57BL6NJ_T0081749.1 MGP_C57BL6NJ_G0031974.1 mouse_genomes_project 7 618567 765725 - MGP_C57BL6NJ_P0081749 protein_coding protein_coding MGP_C57BL6NJ_T0081750.1 MGP_C57BL6NJ_G0031974.1 mouse_genomes_project 7 629718 765734 - protein_coding retained_intron MGP_C57BL6NJ_T0081751.1 MGP_C57BL6NJ_G0031974.1 mouse_genomes_project 7 629723 765725 - protein_coding retained_intron MGP_C57BL6NJ_T0081752.1 MGP_C57BL6NJ_G0031974.1 mouse_genomes_project 7 629723 765522 - protein_coding retained_intron MGP_C57BL6NJ_T0008995.1 MGP_C57BL6NJ_G0007265.1 mouse_genomes_project 7 23751497 23753313 + Gm4598 lincRNA lincRNA MGP_C57BL6NJ_T0011156.1 MGP_C57BL6NJ_G0009241.1 mouse_genomes_project 7 68188687 68188804 - Mir6416 miRNA miRNA MGP_C57BL6NJ_T0009012.1 MGP_C57BL6NJ_G0007280.1 mouse_genomes_project 7 35429755 35524116 + Gm12766 lincRNA lincRNA MGP_C57BL6NJ_T0005390.1 MGP_C57BL6NJ_G0004579.1 mouse_genomes_project 7 79130987 79150147 + Gm7580 antisense antisense MGP_C57BL6NJ_T0005461.1 MGP_C57BL6NJ_G0004628.1 mouse_genomes_project 7 137794476 137801596 - Gm44850 antisense antisense MGP_C57BL6NJ_T0016148.1 MGP_C57BL6NJ_G0014193.1 mouse_genomes_project 7 12341017 12343268 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084024.1 MGP_C57BL6NJ_G0032617.1 mouse_genomes_project 7 46049371 46055635 + MGP_C57BL6NJ_P0084024 Klk8 protein_coding protein_coding MGP_C57BL6NJ_T0084025.1 MGP_C57BL6NJ_G0032617.1 mouse_genomes_project 7 46049390 46055484 + MGP_C57BL6NJ_P0084025 Klk8 protein_coding protein_coding MGP_C57BL6NJ_T0084026.1 MGP_C57BL6NJ_G0032617.1 mouse_genomes_project 7 46053678 46055639 + Klk8 protein_coding retained_intron MGP_C57BL6NJ_T0084661.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59163078 59205328 + MGP_C57BL6NJ_P0084661 Tubgcp5 protein_coding protein_coding MGP_C57BL6NJ_T0084662.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59163089 59200750 + Tubgcp5 protein_coding retained_intron MGP_C57BL6NJ_T0084663.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59163092 59205097 + MGP_C57BL6NJ_P0084663 Tubgcp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084664.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59163115 59205097 + MGP_C57BL6NJ_P0084664 Tubgcp5 protein_coding protein_coding MGP_C57BL6NJ_T0084665.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59163149 59167837 + MGP_C57BL6NJ_P0084665 Tubgcp5 protein_coding protein_coding MGP_C57BL6NJ_T0084666.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59173543 59177869 + Tubgcp5 protein_coding retained_intron MGP_C57BL6NJ_T0084667.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59175196 59188888 + Tubgcp5 protein_coding retained_intron MGP_C57BL6NJ_T0084668.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59188436 59190152 + Tubgcp5 protein_coding retained_intron MGP_C57BL6NJ_T0084669.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59192754 59204586 + Tubgcp5 protein_coding retained_intron MGP_C57BL6NJ_T0084670.1 MGP_C57BL6NJ_G0032796.1 mouse_genomes_project 7 59199931 59204888 + MGP_C57BL6NJ_P0084670 Tubgcp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086341.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117136599 117187665 - MGP_C57BL6NJ_P0086341 Ric3 protein_coding protein_coding MGP_C57BL6NJ_T0086342.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117136599 117163447 - MGP_C57BL6NJ_P0086342 Ric3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086343.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117140235 117187656 - MGP_C57BL6NJ_P0086343 Ric3 protein_coding protein_coding MGP_C57BL6NJ_T0086344.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117147502 117187645 - Ric3 protein_coding retained_intron MGP_C57BL6NJ_T0086345.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117163109 117187656 - Ric3 protein_coding retained_intron MGP_C57BL6NJ_T0086346.1 MGP_C57BL6NJ_G0033332.1 mouse_genomes_project 7 117185077 117187639 - Ric3 protein_coding processed_transcript MGP_C57BL6NJ_T0016320.1 MGP_C57BL6NJ_G0014365.1 mouse_genomes_project 7 96132209 96132701 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103438.1 MGP_C57BL6NJ_G0041230.1 mouse_genomes_project 7 46276712 46278749 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084580.1 MGP_C57BL6NJ_G0032772.1 mouse_genomes_project 7 51063304 51064523 - MGP_C57BL6NJ_P0084580 Mrgprb4 protein_coding protein_coding MGP_C57BL6NJ_T0018862.1 MGP_C57BL6NJ_G0016073.1 mouse_genomes_project 7 90214068 90306854 + 2610206C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018863.1 MGP_C57BL6NJ_G0016073.1 mouse_genomes_project 7 90306007 90306325 + 2610206C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0103322.1 MGP_C57BL6NJ_G0041115.1 mouse_genomes_project 7 7983209 7984105 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099144.1 MGP_C57BL6NJ_G0037208.1 mouse_genomes_project 7 14931097 14931216 + n-R5s151 rRNA rRNA MGP_C57BL6NJ_T0083218.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083218 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083219.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083219 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083220.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083220 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083221.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083221 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083222.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083222 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083223.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919732 28941923 + MGP_C57BL6NJ_P0083223 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083224.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919814 28938697 + Rasgrp4 protein_coding retained_intron MGP_C57BL6NJ_T0083225.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919814 28943342 + MGP_C57BL6NJ_P0083225 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083226.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919814 28943320 + MGP_C57BL6NJ_P0083226 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083227.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919814 28941002 + MGP_C57BL6NJ_P0083227 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083228.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919863 28940359 + Rasgrp4 protein_coding retained_intron MGP_C57BL6NJ_T0083229.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919887 28937932 + MGP_C57BL6NJ_P0083229 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0083230.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28919954 28940880 + MGP_C57BL6NJ_P0083230 Rasgrp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083231.1 MGP_C57BL6NJ_G0032420.1 mouse_genomes_project 7 28939576 28941000 + MGP_C57BL6NJ_P0083231 Rasgrp4 protein_coding protein_coding MGP_C57BL6NJ_T0016285.1 MGP_C57BL6NJ_G0014330.1 mouse_genomes_project 7 69219237 69220493 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083304.1 MGP_C57BL6NJ_G0032435.1 mouse_genomes_project 7 29618529 29629797 + MGP_C57BL6NJ_P0083304 Zfp84 protein_coding protein_coding MGP_C57BL6NJ_T0016345.1 MGP_C57BL6NJ_G0014390.1 mouse_genomes_project 7 111208787 111211413 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011958.1 MGP_C57BL6NJ_G0010043.1 mouse_genomes_project 7 123385396 123385714 + Gm22669 misc_RNA misc_RNA MGP_C57BL6NJ_T0084395.1 MGP_C57BL6NJ_G0032716.1 mouse_genomes_project 7 48171779 48175247 + MGP_C57BL6NJ_P0084395 Fut1 protein_coding protein_coding MGP_C57BL6NJ_T0005367.1 MGP_C57BL6NJ_G0004563.1 mouse_genomes_project 7 39643581 40230894 + antisense antisense MGP_C57BL6NJ_T0083850.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36957507 36988336 - MGP_C57BL6NJ_P0083850 Zfp507 protein_coding protein_coding MGP_C57BL6NJ_T0083851.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36958891 36979391 - MGP_C57BL6NJ_P0083851 Zfp507 protein_coding protein_coding MGP_C57BL6NJ_T0083852.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36961138 36988314 - MGP_C57BL6NJ_P0083852 Zfp507 protein_coding protein_coding MGP_C57BL6NJ_T0083853.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36963970 36964515 - Zfp507 protein_coding processed_transcript MGP_C57BL6NJ_T0083854.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36977068 36988333 - MGP_C57BL6NJ_P0083854 Zfp507 protein_coding protein_coding MGP_C57BL6NJ_T0083855.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36986356 36988301 - Zfp507 protein_coding retained_intron MGP_C57BL6NJ_T0083856.1 MGP_C57BL6NJ_G0032560.1 mouse_genomes_project 7 36987363 36988350 - Zfp507 protein_coding retained_intron MGP_C57BL6NJ_T0086673.1 MGP_C57BL6NJ_G0033400.1 mouse_genomes_project 7 127614347 127671069 + Iqck protein_coding retained_intron MGP_C57BL6NJ_T0086674.1 MGP_C57BL6NJ_G0033400.1 mouse_genomes_project 7 127614362 127750656 + MGP_C57BL6NJ_P0086674 Iqck protein_coding protein_coding MGP_C57BL6NJ_T0086675.1 MGP_C57BL6NJ_G0033400.1 mouse_genomes_project 7 127614362 127751188 + MGP_C57BL6NJ_P0086675 Iqck protein_coding protein_coding MGP_C57BL6NJ_T0086676.1 MGP_C57BL6NJ_G0033400.1 mouse_genomes_project 7 127614362 127750824 + MGP_C57BL6NJ_P0086676 Iqck protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086677.1 MGP_C57BL6NJ_G0033400.1 mouse_genomes_project 7 127712768 127750302 + Iqck protein_coding processed_transcript MGP_C57BL6NJ_T0101874.1 MGP_C57BL6NJ_G0039920.1 mouse_genomes_project 7 71783480 71783617 - Gm23233 snoRNA snoRNA MGP_C57BL6NJ_T0084238.1 MGP_C57BL6NJ_G0032673.1 mouse_genomes_project 7 47460980 47471922 - MGP_C57BL6NJ_P0084238 protein_coding protein_coding MGP_C57BL6NJ_T0016253.1 MGP_C57BL6NJ_G0014298.1 mouse_genomes_project 7 44825054 44825584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005460.1 MGP_C57BL6NJ_G0004627.1 mouse_genomes_project 7 137758220 137759938 - Gm45108 antisense antisense MGP_C57BL6NJ_T0087299.1 MGP_C57BL6NJ_G0033526.1 mouse_genomes_project 7 136809334 136811963 - MGP_C57BL6NJ_P0087299 Zfp768 protein_coding protein_coding MGP_C57BL6NJ_T0087300.1 MGP_C57BL6NJ_G0033526.1 mouse_genomes_project 7 136809334 136812129 - MGP_C57BL6NJ_P0087300 Zfp768 protein_coding protein_coding MGP_C57BL6NJ_T0083393.1 MGP_C57BL6NJ_G0032461.1 mouse_genomes_project 7 30236857 30240173 + protein_coding retained_intron MGP_C57BL6NJ_T0083394.1 MGP_C57BL6NJ_G0032461.1 mouse_genomes_project 7 30236908 30240171 + protein_coding retained_intron MGP_C57BL6NJ_T0086498.1 MGP_C57BL6NJ_G0033367.1 mouse_genomes_project 7 121567940 121685673 + MGP_C57BL6NJ_P0086498 Arntl protein_coding protein_coding MGP_C57BL6NJ_T0085835.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108248965 108319086 + MGP_C57BL6NJ_P0085835 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085836.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108263748 108275068 + MGP_C57BL6NJ_P0085836 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085837.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108263963 108274942 + MGP_C57BL6NJ_P0085837 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085838.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108264489 108275077 + MGP_C57BL6NJ_P0085838 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085839.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108274905 108319653 + MGP_C57BL6NJ_P0085839 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085840.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108280271 108291923 + MGP_C57BL6NJ_P0085840 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085841.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108284729 108287496 + Arap1 protein_coding processed_transcript MGP_C57BL6NJ_T0085842.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108285922 108291593 + MGP_C57BL6NJ_P0085842 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085843.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108287299 108291841 + MGP_C57BL6NJ_P0085843 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085844.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108287304 108292233 + MGP_C57BL6NJ_P0085844 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085845.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108299762 108320351 + MGP_C57BL6NJ_P0085845 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085846.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108299782 108320351 + MGP_C57BL6NJ_P0085846 Arap1 protein_coding protein_coding MGP_C57BL6NJ_T0085847.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108300049 108301526 + Arap1 protein_coding retained_intron MGP_C57BL6NJ_T0085848.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108301243 108303753 + Arap1 protein_coding processed_transcript MGP_C57BL6NJ_T0085849.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108303738 108304942 + Arap1 protein_coding processed_transcript MGP_C57BL6NJ_T0085850.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108309282 108316806 + Arap1 protein_coding retained_intron MGP_C57BL6NJ_T0085851.1 MGP_C57BL6NJ_G0033067.1 mouse_genomes_project 7 108315375 108319444 + Arap1 protein_coding retained_intron MGP_C57BL6NJ_T0018870.1 MGP_C57BL6NJ_G0016076.1 mouse_genomes_project 7 108214482 108225160 - Gm20476 processed_transcript processed_transcript MGP_C57BL6NJ_T0083246.1 MGP_C57BL6NJ_G0032424.1 mouse_genomes_project 7 28968640 28981214 - MGP_C57BL6NJ_P0083246 Psmd8 protein_coding protein_coding MGP_C57BL6NJ_T0083247.1 MGP_C57BL6NJ_G0032424.1 mouse_genomes_project 7 28968640 28981242 - MGP_C57BL6NJ_P0083247 Psmd8 protein_coding protein_coding MGP_C57BL6NJ_T0083248.1 MGP_C57BL6NJ_G0032424.1 mouse_genomes_project 7 28968640 28974994 - MGP_C57BL6NJ_P0083248 Psmd8 protein_coding protein_coding MGP_C57BL6NJ_T0103370.1 MGP_C57BL6NJ_G0041163.1 mouse_genomes_project 7 13090955 13091457 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082416.1 MGP_C57BL6NJ_G0032203.1 mouse_genomes_project 7 17919692 17926242 + MGP_C57BL6NJ_P0082416 Dmwd protein_coding protein_coding MGP_C57BL6NJ_T0082417.1 MGP_C57BL6NJ_G0032203.1 mouse_genomes_project 7 17919723 17926242 + MGP_C57BL6NJ_P0082417 Dmwd protein_coding protein_coding MGP_C57BL6NJ_T0082418.1 MGP_C57BL6NJ_G0032203.1 mouse_genomes_project 7 17921458 17926241 + Dmwd protein_coding processed_transcript MGP_C57BL6NJ_T0082419.1 MGP_C57BL6NJ_G0032203.1 mouse_genomes_project 7 17921491 17925968 + Dmwd protein_coding processed_transcript MGP_C57BL6NJ_T0087195.1 MGP_C57BL6NJ_G0033503.1 mouse_genomes_project 7 136360934 136364498 - MGP_C57BL6NJ_P0087195 protein_coding protein_coding MGP_C57BL6NJ_T0087196.1 MGP_C57BL6NJ_G0033503.1 mouse_genomes_project 7 136361327 136364921 - MGP_C57BL6NJ_P0087196 protein_coding protein_coding MGP_C57BL6NJ_T0087197.1 MGP_C57BL6NJ_G0033503.1 mouse_genomes_project 7 136361346 136364920 - MGP_C57BL6NJ_P0087197 protein_coding protein_coding MGP_C57BL6NJ_T0086039.1 MGP_C57BL6NJ_G0033150.1 mouse_genomes_project 7 110753241 110754198 + MGP_C57BL6NJ_P0086039 Olfr618 protein_coding protein_coding MGP_C57BL6NJ_T0009020.1 MGP_C57BL6NJ_G0007287.1 mouse_genomes_project 7 36957542 36964515 + Gm26790 lincRNA lincRNA MGP_C57BL6NJ_T0087349.1 MGP_C57BL6NJ_G0033536.1 mouse_genomes_project 7 137063132 137067013 + MGP_C57BL6NJ_P0087349 Tmem265 protein_coding protein_coding MGP_C57BL6NJ_T0087350.1 MGP_C57BL6NJ_G0033536.1 mouse_genomes_project 7 137063321 137068639 + MGP_C57BL6NJ_P0087350 Tmem265 protein_coding protein_coding MGP_C57BL6NJ_T0082139.1 MGP_C57BL6NJ_G0032109.1 mouse_genomes_project 7 11056661 11057612 - MGP_C57BL6NJ_P0082139 Vmn1r86 protein_coding protein_coding MGP_C57BL6NJ_T0084577.1 MGP_C57BL6NJ_G0032769.1 mouse_genomes_project 7 50840241 50841500 - MGP_C57BL6NJ_P0084577 Mrgpra4 protein_coding protein_coding MGP_C57BL6NJ_T0103503.1 MGP_C57BL6NJ_G0041295.1 mouse_genomes_project 7 91306002 91306909 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099150.1 MGP_C57BL6NJ_G0037214.1 mouse_genomes_project 7 88178785 88178893 - n-R5s154 rRNA rRNA MGP_C57BL6NJ_T0086299.1 MGP_C57BL6NJ_G0033294.1 mouse_genomes_project 7 115787901 115788846 - MGP_C57BL6NJ_P0086299 protein_coding protein_coding MGP_C57BL6NJ_T0085320.1 MGP_C57BL6NJ_G0032919.1 mouse_genomes_project 7 87222963 87223225 - MGP_C57BL6NJ_P0085320 Gm10160 protein_coding protein_coding MGP_C57BL6NJ_T0083550.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781111 30782977 + Krtdap protein_coding retained_intron MGP_C57BL6NJ_T0083551.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781120 30784281 + MGP_C57BL6NJ_P0083551 Krtdap protein_coding protein_coding MGP_C57BL6NJ_T0083552.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781120 30784297 + MGP_C57BL6NJ_P0083552 Krtdap protein_coding protein_coding MGP_C57BL6NJ_T0083553.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781120 30784303 + MGP_C57BL6NJ_P0083553 Krtdap protein_coding protein_coding MGP_C57BL6NJ_T0083554.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781120 30784311 + MGP_C57BL6NJ_P0083554 Krtdap protein_coding protein_coding MGP_C57BL6NJ_T0083555.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30781120 30784299 + MGP_C57BL6NJ_P0083555 Krtdap protein_coding protein_coding MGP_C57BL6NJ_T0083556.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30783015 30784299 + Krtdap protein_coding retained_intron MGP_C57BL6NJ_T0083557.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30783067 30784297 + Krtdap protein_coding retained_intron MGP_C57BL6NJ_T0083558.1 MGP_C57BL6NJ_G0032495.1 mouse_genomes_project 7 30783700 30784299 + Krtdap protein_coding retained_intron MGP_C57BL6NJ_T0084742.1 MGP_C57BL6NJ_G0032812.1 mouse_genomes_project 7 66266183 66268730 - MGP_C57BL6NJ_P0084742 Mkrn3 protein_coding protein_coding MGP_C57BL6NJ_T0086125.1 MGP_C57BL6NJ_G0033215.1 mouse_genomes_project 7 112271759 112274091 - MGP_C57BL6NJ_P0086125 Usp17lb protein_coding protein_coding MGP_C57BL6NJ_T0086126.1 MGP_C57BL6NJ_G0033215.1 mouse_genomes_project 7 112271814 112273992 - MGP_C57BL6NJ_P0086126 Usp17lb protein_coding protein_coding MGP_C57BL6NJ_T0082766.1 MGP_C57BL6NJ_G0032301.1 mouse_genomes_project 7 24285689 24290383 + Zfp574 protein_coding processed_transcript MGP_C57BL6NJ_T0082767.1 MGP_C57BL6NJ_G0032301.1 mouse_genomes_project 7 24285768 24290742 + Zfp574 protein_coding processed_transcript MGP_C57BL6NJ_T0082768.1 MGP_C57BL6NJ_G0032301.1 mouse_genomes_project 7 24290571 24296859 + MGP_C57BL6NJ_P0082768 Zfp574 protein_coding protein_coding MGP_C57BL6NJ_T0082769.1 MGP_C57BL6NJ_G0032301.1 mouse_genomes_project 7 24290650 24295847 + MGP_C57BL6NJ_P0082769 Zfp574 protein_coding protein_coding MGP_C57BL6NJ_T0103439.1 MGP_C57BL6NJ_G0041231.1 mouse_genomes_project 7 46286584 46302916 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081934.1 MGP_C57BL6NJ_G0032013.1 mouse_genomes_project 7 1943383 1963621 + MGP_C57BL6NJ_P0081934 Ssc5d protein_coding protein_coding MGP_C57BL6NJ_T0085715.1 MGP_C57BL6NJ_G0033041.1 mouse_genomes_project 7 106590363 106612847 - MGP_C57BL6NJ_P0085715 Spcs2 protein_coding protein_coding MGP_C57BL6NJ_T0081806.1 MGP_C57BL6NJ_G0031986.1 mouse_genomes_project 7 1297370 1331858 - MGP_C57BL6NJ_P0081806 Gp6 protein_coding protein_coding MGP_C57BL6NJ_T0081807.1 MGP_C57BL6NJ_G0031986.1 mouse_genomes_project 7 1303821 1331842 - MGP_C57BL6NJ_P0081807 Gp6 protein_coding protein_coding MGP_C57BL6NJ_T0082030.1 MGP_C57BL6NJ_G0032060.1 mouse_genomes_project 7 4037600 4295563 + MGP_C57BL6NJ_P0082030 Usp29 protein_coding protein_coding MGP_C57BL6NJ_T0082031.1 MGP_C57BL6NJ_G0032060.1 mouse_genomes_project 7 4037758 4290107 + MGP_C57BL6NJ_P0082031 Usp29 protein_coding protein_coding MGP_C57BL6NJ_T0082032.1 MGP_C57BL6NJ_G0032060.1 mouse_genomes_project 7 4274608 4293178 + MGP_C57BL6NJ_P0082032 Usp29 protein_coding protein_coding MGP_C57BL6NJ_T0082033.1 MGP_C57BL6NJ_G0032060.1 mouse_genomes_project 7 4289512 4292122 + MGP_C57BL6NJ_P0082033 Usp29 protein_coding protein_coding MGP_C57BL6NJ_T0087008.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135851568 135857070 + MGP_C57BL6NJ_P0087008 protein_coding protein_coding MGP_C57BL6NJ_T0087010.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135851585 135857074 + MGP_C57BL6NJ_P0087010 protein_coding protein_coding MGP_C57BL6NJ_T0087011.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135851836 135855432 + protein_coding processed_transcript MGP_C57BL6NJ_T0087012.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135852821 135855619 + protein_coding retained_intron MGP_C57BL6NJ_T0087013.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135855171 135855861 + MGP_C57BL6NJ_P0087013 protein_coding protein_coding MGP_C57BL6NJ_T0087014.1 MGP_C57BL6NJ_G0033476.1 mouse_genomes_project 7 135855856 135856572 + MGP_C57BL6NJ_P0087014 protein_coding protein_coding MGP_C57BL6NJ_T0103505.1 MGP_C57BL6NJ_G0041297.1 mouse_genomes_project 7 91447285 91448202 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084071.1 MGP_C57BL6NJ_G0032640.1 mouse_genomes_project 7 46706955 46711171 - MGP_C57BL6NJ_P0084071 Clec11a protein_coding protein_coding MGP_C57BL6NJ_T0005361.1 MGP_C57BL6NJ_G0004559.1 mouse_genomes_project 7 36670754 36672323 + B230322F03Rik antisense antisense MGP_C57BL6NJ_T0084593.1 MGP_C57BL6NJ_G0032780.1 mouse_genomes_project 7 51778868 51794036 - MGP_C57BL6NJ_P0084593 E2f8 protein_coding protein_coding MGP_C57BL6NJ_T0084594.1 MGP_C57BL6NJ_G0032780.1 mouse_genomes_project 7 51778868 51793481 - MGP_C57BL6NJ_P0084594 E2f8 protein_coding protein_coding MGP_C57BL6NJ_T0084595.1 MGP_C57BL6NJ_G0032780.1 mouse_genomes_project 7 51784546 51787691 - E2f8 protein_coding retained_intron MGP_C57BL6NJ_T0084596.1 MGP_C57BL6NJ_G0032780.1 mouse_genomes_project 7 51791272 51793444 - E2f8 protein_coding retained_intron MGP_C57BL6NJ_T0016115.1 MGP_C57BL6NJ_G0014160.1 mouse_genomes_project 7 1131916 1132070 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084499.1 MGP_C57BL6NJ_G0032745.1 mouse_genomes_project 7 48872111 48948109 + MGP_C57BL6NJ_P0084499 Otog protein_coding protein_coding MGP_C57BL6NJ_T0100571.1 MGP_C57BL6NJ_G0038617.1 mouse_genomes_project 7 15104215 15104318 - Gm24708 snRNA snRNA MGP_C57BL6NJ_T0087750.1 MGP_C57BL6NJ_G0033614.1 mouse_genomes_project 7 143591614 143608463 - MGP_C57BL6NJ_P0087750 Tex36 protein_coding protein_coding MGP_C57BL6NJ_T0002359.1 MGP_C57BL6NJ_G0002249.1 mouse_genomes_project 7 41364988 41367986 + TEC TEC MGP_C57BL6NJ_T0084396.1 MGP_C57BL6NJ_G0032717.1 mouse_genomes_project 7 48175998 48181410 + MGP_C57BL6NJ_P0084396 Izumo1 protein_coding protein_coding MGP_C57BL6NJ_T0084397.1 MGP_C57BL6NJ_G0032717.1 mouse_genomes_project 7 48178580 48182991 + Izumo1 protein_coding retained_intron MGP_C57BL6NJ_T0103475.1 MGP_C57BL6NJ_G0041267.1 mouse_genomes_project 7 50725774 50726729 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009048.1 MGP_C57BL6NJ_G0007308.1 mouse_genomes_project 7 44583728 44587223 - lincRNA lincRNA MGP_C57BL6NJ_T0009049.1 MGP_C57BL6NJ_G0007308.1 mouse_genomes_project 7 44583728 44598624 - lincRNA lincRNA MGP_C57BL6NJ_T0009050.1 MGP_C57BL6NJ_G0007308.1 mouse_genomes_project 7 44584223 44587223 - lincRNA lincRNA MGP_C57BL6NJ_T0082285.1 MGP_C57BL6NJ_G0032158.1 mouse_genomes_project 7 15145922 15151648 - MGP_C57BL6NJ_P0082285 Ceacam15 protein_coding protein_coding MGP_C57BL6NJ_T0103431.1 MGP_C57BL6NJ_G0041223.1 mouse_genomes_project 7 43865837 43911790 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016358.1 MGP_C57BL6NJ_G0014403.1 mouse_genomes_project 7 125386366 125387240 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086118.1 MGP_C57BL6NJ_G0033209.1 mouse_genomes_project 7 112075917 112076886 + MGP_C57BL6NJ_P0086118 Olfr659 protein_coding protein_coding MGP_C57BL6NJ_T0086702.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128591664 128619011 - MGP_C57BL6NJ_P0086702 Eri2 protein_coding protein_coding MGP_C57BL6NJ_T0086703.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128594923 128619011 - MGP_C57BL6NJ_P0086703 Eri2 protein_coding protein_coding MGP_C57BL6NJ_T0086707.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128605532 128619019 - Eri2 protein_coding retained_intron MGP_C57BL6NJ_T0086708.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128606786 128619026 - MGP_C57BL6NJ_P0086708 Eri2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086709.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128606803 128619003 - MGP_C57BL6NJ_P0086709 Eri2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086710.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128607855 128619102 - MGP_C57BL6NJ_P0086710 Eri2 protein_coding protein_coding MGP_C57BL6NJ_T0086711.1 MGP_C57BL6NJ_G0033412.1 mouse_genomes_project 7 128609453 128610912 - Eri2 protein_coding retained_intron MGP_C57BL6NJ_T0083775.1 MGP_C57BL6NJ_G0032547.1 mouse_genomes_project 7 36255258 36270088 + MGP_C57BL6NJ_P0083775 Slc7a10 protein_coding protein_coding MGP_C57BL6NJ_T0083776.1 MGP_C57BL6NJ_G0032547.1 mouse_genomes_project 7 36255258 36264425 + MGP_C57BL6NJ_P0083776 Slc7a10 protein_coding protein_coding MGP_C57BL6NJ_T0083777.1 MGP_C57BL6NJ_G0032547.1 mouse_genomes_project 7 36255294 36269888 + MGP_C57BL6NJ_P0083777 Slc7a10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083778.1 MGP_C57BL6NJ_G0032547.1 mouse_genomes_project 7 36255355 36266925 + MGP_C57BL6NJ_P0083778 Slc7a10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083779.1 MGP_C57BL6NJ_G0032547.1 mouse_genomes_project 7 36267888 36269869 + MGP_C57BL6NJ_P0083779 Slc7a10 protein_coding protein_coding MGP_C57BL6NJ_T0084834.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70179492 70195763 + Snrpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0084835.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70180788 70190016 + Snrpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0084836.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70180827 70196007 + MGP_C57BL6NJ_P0084836 Snrpa1 protein_coding protein_coding MGP_C57BL6NJ_T0084837.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70181021 70195796 + Snrpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0084838.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70181033 70196000 + MGP_C57BL6NJ_P0084838 Snrpa1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084839.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70181053 70192102 + Snrpa1 protein_coding retained_intron MGP_C57BL6NJ_T0084840.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70181092 70195790 + Snrpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0084841.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70181270 70182660 + Snrpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0084842.1 MGP_C57BL6NJ_G0032831.1 mouse_genomes_project 7 70189341 70190013 + Snrpa1 protein_coding retained_intron MGP_C57BL6NJ_T0088271.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153062328 153096378 + MGP_C57BL6NJ_P0088271 Lsp1 protein_coding protein_coding MGP_C57BL6NJ_T0088272.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153062365 153096378 + MGP_C57BL6NJ_P0088272 Lsp1 protein_coding protein_coding MGP_C57BL6NJ_T0088273.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153062383 153096114 + MGP_C57BL6NJ_P0088273 Lsp1 protein_coding protein_coding MGP_C57BL6NJ_T0088274.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153073362 153096110 + MGP_C57BL6NJ_P0088274 Lsp1 protein_coding protein_coding MGP_C57BL6NJ_T0088275.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153073391 153089882 + Lsp1 protein_coding retained_intron MGP_C57BL6NJ_T0088276.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153073670 153096111 + MGP_C57BL6NJ_P0088276 Lsp1 protein_coding protein_coding MGP_C57BL6NJ_T0088277.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153076513 153088015 + Lsp1 protein_coding processed_transcript MGP_C57BL6NJ_T0088278.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153078532 153096378 + Lsp1 protein_coding processed_transcript MGP_C57BL6NJ_T0088279.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153084769 153091494 + Lsp1 protein_coding processed_transcript MGP_C57BL6NJ_T0088280.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153084914 153087991 + Lsp1 protein_coding processed_transcript MGP_C57BL6NJ_T0088281.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153090527 153091933 + Lsp1 protein_coding retained_intron MGP_C57BL6NJ_T0088282.1 MGP_C57BL6NJ_G0033751.1 mouse_genomes_project 7 153091323 153096028 + Lsp1 protein_coding retained_intron MGP_C57BL6NJ_T0082564.1 MGP_C57BL6NJ_G0032242.1 mouse_genomes_project 7 18683739 18697750 - MGP_C57BL6NJ_P0082564 Bcam protein_coding protein_coding MGP_C57BL6NJ_T0082565.1 MGP_C57BL6NJ_G0032242.1 mouse_genomes_project 7 18684165 18684560 - Bcam protein_coding retained_intron MGP_C57BL6NJ_T0082566.1 MGP_C57BL6NJ_G0032242.1 mouse_genomes_project 7 18690822 18697698 - Bcam protein_coding retained_intron MGP_C57BL6NJ_T0082567.1 MGP_C57BL6NJ_G0032242.1 mouse_genomes_project 7 18692762 18698219 - MGP_C57BL6NJ_P0082567 Bcam protein_coding protein_coding MGP_C57BL6NJ_T0082568.1 MGP_C57BL6NJ_G0032242.1 mouse_genomes_project 7 18694136 18697698 - MGP_C57BL6NJ_P0082568 Bcam protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082044.1 MGP_C57BL6NJ_G0032071.1 mouse_genomes_project 7 8216751 8217711 - MGP_C57BL6NJ_P0082044 Vmn1r68 protein_coding protein_coding MGP_C57BL6NJ_T0083059.1 MGP_C57BL6NJ_G0032376.1 mouse_genomes_project 7 27577250 27596497 - MGP_C57BL6NJ_P0083059 Zfp780b protein_coding protein_coding MGP_C57BL6NJ_T0016287.1 MGP_C57BL6NJ_G0014332.1 mouse_genomes_project 7 69457997 69458316 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082288.1 MGP_C57BL6NJ_G0032160.1 mouse_genomes_project 7 15225007 15235886 + MGP_C57BL6NJ_P0082288 Ap2s1 protein_coding protein_coding MGP_C57BL6NJ_T0082289.1 MGP_C57BL6NJ_G0032160.1 mouse_genomes_project 7 15225041 15235606 + MGP_C57BL6NJ_P0082289 Ap2s1 protein_coding protein_coding MGP_C57BL6NJ_T0082290.1 MGP_C57BL6NJ_G0032160.1 mouse_genomes_project 7 15225069 15235526 + MGP_C57BL6NJ_P0082290 Ap2s1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082291.1 MGP_C57BL6NJ_G0032160.1 mouse_genomes_project 7 15225135 15235340 + Ap2s1 protein_coding processed_transcript MGP_C57BL6NJ_T0082292.1 MGP_C57BL6NJ_G0032160.1 mouse_genomes_project 7 15233355 15235886 + Ap2s1 protein_coding retained_intron MGP_C57BL6NJ_T0088385.1 MGP_C57BL6NJ_G0033768.1 mouse_genomes_project 7 154185709 154221534 - MGP_C57BL6NJ_P0088385 Nap1l4 protein_coding protein_coding MGP_C57BL6NJ_T0103506.1 MGP_C57BL6NJ_G0041298.1 mouse_genomes_project 7 91526757 91528209 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087285.1 MGP_C57BL6NJ_G0033521.1 mouse_genomes_project 7 136677703 136682822 + MGP_C57BL6NJ_P0087285 Zfp553 protein_coding protein_coding MGP_C57BL6NJ_T0087286.1 MGP_C57BL6NJ_G0033521.1 mouse_genomes_project 7 136677897 136682686 + MGP_C57BL6NJ_P0087286 Zfp553 protein_coding protein_coding MGP_C57BL6NJ_T0087287.1 MGP_C57BL6NJ_G0033521.1 mouse_genomes_project 7 136677936 136678763 + Zfp553 protein_coding retained_intron MGP_C57BL6NJ_T0009118.1 MGP_C57BL6NJ_G0007361.1 mouse_genomes_project 7 79585724 79623424 - 0610006L08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009119.1 MGP_C57BL6NJ_G0007361.1 mouse_genomes_project 7 79590521 79623421 - 0610006L08Rik lincRNA lincRNA MGP_C57BL6NJ_T0103458.1 MGP_C57BL6NJ_G0041250.1 mouse_genomes_project 7 46600065 46602715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087907.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150516929 150522543 - MGP_C57BL6NJ_P0087907 Fuom protein_coding protein_coding MGP_C57BL6NJ_T0087908.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150518670 150522546 - MGP_C57BL6NJ_P0087908 Fuom protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087909.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150519629 150522516 - MGP_C57BL6NJ_P0087909 Fuom protein_coding protein_coding MGP_C57BL6NJ_T0087910.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150519629 150522581 - MGP_C57BL6NJ_P0087910 Fuom protein_coding protein_coding MGP_C57BL6NJ_T0087911.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150519631 150520128 - Fuom protein_coding retained_intron MGP_C57BL6NJ_T0087912.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150519633 150522460 - Fuom protein_coding processed_transcript MGP_C57BL6NJ_T0087913.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150519653 150521404 - Fuom protein_coding retained_intron MGP_C57BL6NJ_T0087914.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150520048 150522484 - MGP_C57BL6NJ_P0087914 Fuom protein_coding protein_coding MGP_C57BL6NJ_T0087915.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150520716 150522546 - MGP_C57BL6NJ_P0087915 Fuom protein_coding protein_coding MGP_C57BL6NJ_T0087916.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150521262 150522446 - Fuom protein_coding processed_transcript MGP_C57BL6NJ_T0087917.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150521314 150522106 - Fuom protein_coding processed_transcript MGP_C57BL6NJ_T0087918.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150521323 150522546 - Fuom protein_coding retained_intron MGP_C57BL6NJ_T0087919.1 MGP_C57BL6NJ_G0033657.1 mouse_genomes_project 7 150521438 150522470 - Fuom protein_coding retained_intron MGP_C57BL6NJ_T0083793.1 MGP_C57BL6NJ_G0032551.1 mouse_genomes_project 7 36499463 36504145 - MGP_C57BL6NJ_P0083793 Faap24 protein_coding protein_coding MGP_C57BL6NJ_T0083794.1 MGP_C57BL6NJ_G0032551.1 mouse_genomes_project 7 36499616 36504022 - Faap24 protein_coding retained_intron MGP_C57BL6NJ_T0083795.1 MGP_C57BL6NJ_G0032551.1 mouse_genomes_project 7 36500007 36504017 - MGP_C57BL6NJ_P0083795 Faap24 protein_coding protein_coding MGP_C57BL6NJ_T0082539.1 MGP_C57BL6NJ_G0032236.1 mouse_genomes_project 7 18577327 18581574 - MGP_C57BL6NJ_P0082539 Gm44805 protein_coding protein_coding MGP_C57BL6NJ_T0082540.1 MGP_C57BL6NJ_G0032236.1 mouse_genomes_project 7 18577332 18578644 - MGP_C57BL6NJ_P0082540 Gm44805 protein_coding protein_coding MGP_C57BL6NJ_T0082541.1 MGP_C57BL6NJ_G0032236.1 mouse_genomes_project 7 18577332 18589024 - MGP_C57BL6NJ_P0082541 Gm44805 protein_coding protein_coding MGP_C57BL6NJ_T0082542.1 MGP_C57BL6NJ_G0032236.1 mouse_genomes_project 7 18577332 18582651 - MGP_C57BL6NJ_P0082542 Gm44805 protein_coding protein_coding MGP_C57BL6NJ_T0082543.1 MGP_C57BL6NJ_G0032236.1 mouse_genomes_project 7 18577952 18589037 - MGP_C57BL6NJ_P0082543 Gm44805 protein_coding protein_coding MGP_C57BL6NJ_T0088384.1 MGP_C57BL6NJ_G0033767.1 mouse_genomes_project 7 154171265 154172262 - MGP_C57BL6NJ_P0088384 Phlda2 protein_coding protein_coding MGP_C57BL6NJ_T0011177.1 MGP_C57BL6NJ_G0009262.1 mouse_genomes_project 7 126436607 126436712 + Gm24063 miRNA miRNA MGP_C57BL6NJ_T0005347.1 MGP_C57BL6NJ_G0004548.1 mouse_genomes_project 7 30716240 30739328 + antisense antisense MGP_C57BL6NJ_T0082326.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15376263 15379903 + MGP_C57BL6NJ_P0082326 Gng8 protein_coding protein_coding MGP_C57BL6NJ_T0082327.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15376689 15379913 + MGP_C57BL6NJ_P0082327 Gng8 protein_coding protein_coding MGP_C57BL6NJ_T0082328.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15376748 15379901 + MGP_C57BL6NJ_P0082328 Gng8 protein_coding protein_coding MGP_C57BL6NJ_T0082329.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15376798 15379904 + Gng8 protein_coding processed_transcript MGP_C57BL6NJ_T0082330.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15379124 15379914 + Gng8 protein_coding retained_intron MGP_C57BL6NJ_T0082331.1 MGP_C57BL6NJ_G0032166.1 mouse_genomes_project 7 15379422 15379841 + Gng8 protein_coding retained_intron MGP_C57BL6NJ_T0083876.1 MGP_C57BL6NJ_G0032564.1 mouse_genomes_project 7 39470988 39481229 - MGP_C57BL6NJ_P0083876 Ccne1 protein_coding protein_coding MGP_C57BL6NJ_T0083877.1 MGP_C57BL6NJ_G0032564.1 mouse_genomes_project 7 39471672 39472506 - Ccne1 protein_coding retained_intron MGP_C57BL6NJ_T0083878.1 MGP_C57BL6NJ_G0032564.1 mouse_genomes_project 7 39471815 39472374 - Ccne1 protein_coding processed_transcript MGP_C57BL6NJ_T0083879.1 MGP_C57BL6NJ_G0032564.1 mouse_genomes_project 7 39473662 39480603 - MGP_C57BL6NJ_P0083879 Ccne1 protein_coding protein_coding MGP_C57BL6NJ_T0083880.1 MGP_C57BL6NJ_G0032564.1 mouse_genomes_project 7 39476867 39481197 - MGP_C57BL6NJ_P0083880 Ccne1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005386.1 MGP_C57BL6NJ_G0004576.1 mouse_genomes_project 7 76647555 76650251 + Gm45107 antisense antisense MGP_C57BL6NJ_T0016216.1 MGP_C57BL6NJ_G0014261.1 mouse_genomes_project 7 34768966 34769725 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100611.1 MGP_C57BL6NJ_G0038657.1 mouse_genomes_project 7 118167769 118167910 + Gm23100 snRNA snRNA MGP_C57BL6NJ_T0082359.1 MGP_C57BL6NJ_G0032176.1 mouse_genomes_project 7 15688405 15700919 + MGP_C57BL6NJ_P0082359 Psg29 protein_coding protein_coding MGP_C57BL6NJ_T0084068.1 MGP_C57BL6NJ_G0032639.1 mouse_genomes_project 7 46649976 46655207 - MGP_C57BL6NJ_P0084068 Acpt protein_coding protein_coding MGP_C57BL6NJ_T0084069.1 MGP_C57BL6NJ_G0032639.1 mouse_genomes_project 7 46650913 46655207 - MGP_C57BL6NJ_P0084069 Acpt protein_coding protein_coding MGP_C57BL6NJ_T0084070.1 MGP_C57BL6NJ_G0032639.1 mouse_genomes_project 7 46650920 46655034 - MGP_C57BL6NJ_P0084070 Acpt protein_coding protein_coding MGP_C57BL6NJ_T0083353.1 MGP_C57BL6NJ_G0032450.1 mouse_genomes_project 7 30025893 30037758 + MGP_C57BL6NJ_P0083353 Zfp382 protein_coding protein_coding MGP_C57BL6NJ_T0083354.1 MGP_C57BL6NJ_G0032450.1 mouse_genomes_project 7 30025921 30033909 + MGP_C57BL6NJ_P0083354 Zfp382 protein_coding protein_coding MGP_C57BL6NJ_T0083355.1 MGP_C57BL6NJ_G0032450.1 mouse_genomes_project 7 30028691 30036638 + Zfp382 protein_coding retained_intron MGP_C57BL6NJ_T0009045.1 MGP_C57BL6NJ_G0007305.1 mouse_genomes_project 7 42707869 42741292 - lincRNA lincRNA MGP_C57BL6NJ_T0008994.1 MGP_C57BL6NJ_G0007264.1 mouse_genomes_project 7 23518163 23521137 + Gm44512 lincRNA lincRNA MGP_C57BL6NJ_T0087656.1 MGP_C57BL6NJ_G0033589.1 mouse_genomes_project 7 140702595 140749639 + Htra1 protein_coding retained_intron MGP_C57BL6NJ_T0087657.1 MGP_C57BL6NJ_G0033589.1 mouse_genomes_project 7 140702687 140755365 + MGP_C57BL6NJ_P0087657 Htra1 protein_coding protein_coding MGP_C57BL6NJ_T0087658.1 MGP_C57BL6NJ_G0033589.1 mouse_genomes_project 7 140709961 140755365 + Htra1 protein_coding processed_transcript MGP_C57BL6NJ_T0087659.1 MGP_C57BL6NJ_G0033589.1 mouse_genomes_project 7 140751374 140752148 + Htra1 protein_coding retained_intron MGP_C57BL6NJ_T0087660.1 MGP_C57BL6NJ_G0033589.1 mouse_genomes_project 7 140752434 140755101 + Htra1 protein_coding processed_transcript MGP_C57BL6NJ_T0103342.1 MGP_C57BL6NJ_G0041135.1 mouse_genomes_project 7 10334452 10335143 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084035.1 MGP_C57BL6NJ_G0032622.1 mouse_genomes_project 7 46212245 46219016 + MGP_C57BL6NJ_P0084035 Klk15 protein_coding protein_coding MGP_C57BL6NJ_T0084036.1 MGP_C57BL6NJ_G0032622.1 mouse_genomes_project 7 46212298 46218107 + MGP_C57BL6NJ_P0084036 Klk15 protein_coding protein_coding MGP_C57BL6NJ_T0101867.1 MGP_C57BL6NJ_G0039913.1 mouse_genomes_project 7 62910016 62910095 - snoRNA snoRNA MGP_C57BL6NJ_T0087730.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142944848 142974836 - MGP_C57BL6NJ_P0087730 Ctbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087731.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142944863 142974594 - MGP_C57BL6NJ_P0087731 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087732.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142944869 143091607 - MGP_C57BL6NJ_P0087732 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087733.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142945367 143091808 - MGP_C57BL6NJ_P0087733 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087734.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142949464 142984340 - MGP_C57BL6NJ_P0087734 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087735.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142952931 143090641 - MGP_C57BL6NJ_P0087735 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087736.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142973812 143091898 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087737.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142973812 143091789 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087738.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974002 143091787 - MGP_C57BL6NJ_P0087738 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087739.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974076 143081148 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087740.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974181 142991805 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087741.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974199 143093843 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087742.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974467 143091056 - MGP_C57BL6NJ_P0087742 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087743.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142974509 143091866 - MGP_C57BL6NJ_P0087743 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087744.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142987391 143094379 - MGP_C57BL6NJ_P0087744 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087745.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142987409 143080240 - MGP_C57BL6NJ_P0087745 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087746.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142987410 143091753 - MGP_C57BL6NJ_P0087746 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087747.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 142987453 143093929 - MGP_C57BL6NJ_P0087747 Ctbp2 protein_coding protein_coding MGP_C57BL6NJ_T0087748.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 143005428 143093929 - Ctbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087749.1 MGP_C57BL6NJ_G0033613.1 mouse_genomes_project 7 143044424 143091625 - Ctbp2 protein_coding retained_intron MGP_C57BL6NJ_T0086029.1 MGP_C57BL6NJ_G0033140.1 mouse_genomes_project 7 110564175 110565120 - MGP_C57BL6NJ_P0086029 protein_coding protein_coding MGP_C57BL6NJ_T0016259.1 MGP_C57BL6NJ_G0014304.1 mouse_genomes_project 7 45594349 45595079 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016295.1 MGP_C57BL6NJ_G0014340.1 mouse_genomes_project 7 78361025 78362631 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082902.1 MGP_C57BL6NJ_G0032334.1 mouse_genomes_project 7 25925014 25969088 + MGP_C57BL6NJ_P0082902 protein_coding protein_coding MGP_C57BL6NJ_T0082903.1 MGP_C57BL6NJ_G0032334.1 mouse_genomes_project 7 25925062 25959956 + protein_coding processed_transcript MGP_C57BL6NJ_T0002423.1 MGP_C57BL6NJ_G0002312.1 mouse_genomes_project 7 85191084 85193068 + TEC TEC MGP_C57BL6NJ_T0085399.1 MGP_C57BL6NJ_G0032943.1 mouse_genomes_project 7 90494607 90495058 + MGP_C57BL6NJ_P0085399 protein_coding protein_coding MGP_C57BL6NJ_T0086298.1 MGP_C57BL6NJ_G0033293.1 mouse_genomes_project 7 115742975 115743902 + MGP_C57BL6NJ_P0086298 Olfr467 protein_coding protein_coding MGP_C57BL6NJ_T0083933.1 MGP_C57BL6NJ_G0032584.1 mouse_genomes_project 7 44582402 44582525 - MGP_C57BL6NJ_P0083933 Gm21028 protein_coding protein_coding MGP_C57BL6NJ_T0083011.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27059057 27083616 - MGP_C57BL6NJ_P0083011 Pld3 protein_coding protein_coding MGP_C57BL6NJ_T0083012.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27059057 27083610 - MGP_C57BL6NJ_P0083012 Pld3 protein_coding protein_coding MGP_C57BL6NJ_T0083013.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27059252 27059804 - Pld3 protein_coding retained_intron MGP_C57BL6NJ_T0083014.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27060575 27066678 - Pld3 protein_coding retained_intron MGP_C57BL6NJ_T0083015.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27068388 27083414 - MGP_C57BL6NJ_P0083015 Pld3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083016.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27069942 27083582 - MGP_C57BL6NJ_P0083016 Pld3 protein_coding protein_coding MGP_C57BL6NJ_T0083017.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27070477 27071516 - MGP_C57BL6NJ_P0083017 Pld3 protein_coding protein_coding MGP_C57BL6NJ_T0083018.1 MGP_C57BL6NJ_G0032365.1 mouse_genomes_project 7 27071586 27083549 - Pld3 protein_coding processed_transcript MGP_C57BL6NJ_T0085341.1 MGP_C57BL6NJ_G0032924.1 mouse_genomes_project 7 87726674 87731005 + Adamtsl3 protein_coding processed_transcript MGP_C57BL6NJ_T0085342.1 MGP_C57BL6NJ_G0032924.1 mouse_genomes_project 7 87726712 88033402 + MGP_C57BL6NJ_P0085342 Adamtsl3 protein_coding protein_coding MGP_C57BL6NJ_T0085343.1 MGP_C57BL6NJ_G0032924.1 mouse_genomes_project 7 87728198 88031388 + MGP_C57BL6NJ_P0085343 Adamtsl3 protein_coding protein_coding MGP_C57BL6NJ_T0085344.1 MGP_C57BL6NJ_G0032924.1 mouse_genomes_project 7 87807743 87873125 + Adamtsl3 protein_coding retained_intron MGP_C57BL6NJ_T0085345.1 MGP_C57BL6NJ_G0032924.1 mouse_genomes_project 7 88030734 88031726 + MGP_C57BL6NJ_P0085345 Adamtsl3 protein_coding protein_coding MGP_C57BL6NJ_T0103461.1 MGP_C57BL6NJ_G0041253.1 mouse_genomes_project 7 50256292 50276722 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009011.1 MGP_C57BL6NJ_G0007279.1 mouse_genomes_project 7 35204037 35207850 - Gm12762 lincRNA lincRNA MGP_C57BL6NJ_T0005301.1 MGP_C57BL6NJ_G0004516.1 mouse_genomes_project 7 1081574 1092160 - D030047H15Rik antisense antisense MGP_C57BL6NJ_T0009072.1 MGP_C57BL6NJ_G0007325.1 mouse_genomes_project 7 68000776 68006192 + Gm20670 lincRNA lincRNA MGP_C57BL6NJ_T0086939.1 MGP_C57BL6NJ_G0033466.1 mouse_genomes_project 7 135184001 135392974 - MGP_C57BL6NJ_P0086939 Gsg1l protein_coding protein_coding MGP_C57BL6NJ_T0002412.1 MGP_C57BL6NJ_G0002301.1 mouse_genomes_project 7 83782544 83783621 - TEC TEC MGP_C57BL6NJ_T0002348.1 MGP_C57BL6NJ_G0002238.1 mouse_genomes_project 7 36363796 36364551 + TEC TEC MGP_C57BL6NJ_T0016139.1 MGP_C57BL6NJ_G0014184.1 mouse_genomes_project 7 11635337 11677039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086909.1 MGP_C57BL6NJ_G0033460.1 mouse_genomes_project 7 134733478 134752290 + MGP_C57BL6NJ_P0086909 Kdm8 protein_coding protein_coding MGP_C57BL6NJ_T0086910.1 MGP_C57BL6NJ_G0033460.1 mouse_genomes_project 7 134733486 134750042 + MGP_C57BL6NJ_P0086910 Kdm8 protein_coding protein_coding MGP_C57BL6NJ_T0011104.1 MGP_C57BL6NJ_G0009189.1 mouse_genomes_project 7 25902150 25902260 + Gm25947 miRNA miRNA MGP_C57BL6NJ_T0088089.1 MGP_C57BL6NJ_G0033717.1 mouse_genomes_project 7 151832365 151863018 - MGP_C57BL6NJ_P0088089 Deaf1 protein_coding protein_coding MGP_C57BL6NJ_T0085607.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104409434 104483057 + Pak1 protein_coding retained_intron MGP_C57BL6NJ_T0085608.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104409434 104545350 + MGP_C57BL6NJ_P0085608 Pak1 protein_coding protein_coding MGP_C57BL6NJ_T0085609.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104454478 104494443 + MGP_C57BL6NJ_P0085609 Pak1 protein_coding protein_coding MGP_C57BL6NJ_T0085610.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104468403 104545848 + MGP_C57BL6NJ_P0085610 Pak1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085611.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104468403 104545848 + MGP_C57BL6NJ_P0085611 Pak1 protein_coding protein_coding MGP_C57BL6NJ_T0085612.1 MGP_C57BL6NJ_G0033014.1 mouse_genomes_project 7 104527992 104544749 + Pak1 protein_coding retained_intron MGP_C57BL6NJ_T0002459.1 MGP_C57BL6NJ_G0002348.1 mouse_genomes_project 7 138341957 138342953 - TEC TEC MGP_C57BL6NJ_T0082389.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709073 17709586 - Ccdc61 protein_coding retained_intron MGP_C57BL6NJ_T0082390.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709073 17728554 - MGP_C57BL6NJ_P0082390 Ccdc61 protein_coding protein_coding MGP_C57BL6NJ_T0082391.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709074 17710737 - MGP_C57BL6NJ_P0082391 Ccdc61 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082392.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709074 17728537 - MGP_C57BL6NJ_P0082392 Ccdc61 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082393.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709195 17712150 - MGP_C57BL6NJ_P0082393 Ccdc61 protein_coding protein_coding MGP_C57BL6NJ_T0082394.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17709837 17710543 - Ccdc61 protein_coding retained_intron MGP_C57BL6NJ_T0082395.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17717774 17728537 - MGP_C57BL6NJ_P0082395 Ccdc61 protein_coding protein_coding MGP_C57BL6NJ_T0082396.1 MGP_C57BL6NJ_G0032194.1 mouse_genomes_project 7 17719207 17728528 - MGP_C57BL6NJ_P0082396 Ccdc61 protein_coding protein_coding MGP_C57BL6NJ_T0016184.1 MGP_C57BL6NJ_G0014229.1 mouse_genomes_project 7 26613554 26613801 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085375.1 MGP_C57BL6NJ_G0032933.1 mouse_genomes_project 7 89241806 89245589 + MGP_C57BL6NJ_P0085375 protein_coding protein_coding MGP_C57BL6NJ_T0103314.1 MGP_C57BL6NJ_G0041107.1 mouse_genomes_project 7 164771 165615 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011103.1 MGP_C57BL6NJ_G0009188.1 mouse_genomes_project 7 25163058 25163154 - Gm24865 miRNA miRNA MGP_C57BL6NJ_T0083242.1 MGP_C57BL6NJ_G0032422.1 mouse_genomes_project 7 28954322 28963894 - MGP_C57BL6NJ_P0083242 Spred3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083243.1 MGP_C57BL6NJ_G0032422.1 mouse_genomes_project 7 28958719 28964294 - Spred3 protein_coding retained_intron MGP_C57BL6NJ_T0002388.1 MGP_C57BL6NJ_G0002278.1 mouse_genomes_project 7 68505521 68506122 + TEC TEC MGP_C57BL6NJ_T0082023.1 MGP_C57BL6NJ_G0032058.1 mouse_genomes_project 7 3975236 4000202 - MGP_C57BL6NJ_P0082023 Zim1 protein_coding protein_coding MGP_C57BL6NJ_T0082024.1 MGP_C57BL6NJ_G0032058.1 mouse_genomes_project 7 3979763 4000181 - MGP_C57BL6NJ_P0082024 Zim1 protein_coding protein_coding MGP_C57BL6NJ_T0082025.1 MGP_C57BL6NJ_G0032058.1 mouse_genomes_project 7 3980679 3992429 - MGP_C57BL6NJ_P0082025 Zim1 protein_coding protein_coding MGP_C57BL6NJ_T0086791.1 MGP_C57BL6NJ_G0033436.1 mouse_genomes_project 7 130377300 130383508 + MGP_C57BL6NJ_P0086791 Hs3st2 protein_coding protein_coding MGP_C57BL6NJ_T0086792.1 MGP_C57BL6NJ_G0033436.1 mouse_genomes_project 7 130377731 130486125 + MGP_C57BL6NJ_P0086792 Hs3st2 protein_coding protein_coding MGP_C57BL6NJ_T0088040.1 MGP_C57BL6NJ_G0033707.1 mouse_genomes_project 7 151684819 151694770 - MGP_C57BL6NJ_P0088040 Rnh1 protein_coding protein_coding MGP_C57BL6NJ_T0088041.1 MGP_C57BL6NJ_G0033707.1 mouse_genomes_project 7 151684819 151698677 - MGP_C57BL6NJ_P0088041 Rnh1 protein_coding protein_coding MGP_C57BL6NJ_T0002417.1 MGP_C57BL6NJ_G0002306.1 mouse_genomes_project 7 84598539 84599578 + TEC TEC MGP_C57BL6NJ_T0085782.1 MGP_C57BL6NJ_G0033057.1 mouse_genomes_project 7 107424671 107463550 + MGP_C57BL6NJ_P0085782 Rab6a protein_coding protein_coding MGP_C57BL6NJ_T0085783.1 MGP_C57BL6NJ_G0033057.1 mouse_genomes_project 7 107424847 107463550 + MGP_C57BL6NJ_P0085783 Rab6a protein_coding protein_coding MGP_C57BL6NJ_T0085784.1 MGP_C57BL6NJ_G0033057.1 mouse_genomes_project 7 107424951 107463550 + MGP_C57BL6NJ_P0085784 Rab6a protein_coding protein_coding MGP_C57BL6NJ_T0085785.1 MGP_C57BL6NJ_G0033057.1 mouse_genomes_project 7 107456629 107461645 + Rab6a protein_coding retained_intron MGP_C57BL6NJ_T0018815.1 MGP_C57BL6NJ_G0016059.1 mouse_genomes_project 7 47472503 47477476 + Gm15545 processed_transcript processed_transcript MGP_C57BL6NJ_T0018816.1 MGP_C57BL6NJ_G0016059.1 mouse_genomes_project 7 47472530 47480160 + Gm15545 processed_transcript processed_transcript MGP_C57BL6NJ_T0018817.1 MGP_C57BL6NJ_G0016059.1 mouse_genomes_project 7 47472537 47476664 + Gm15545 processed_transcript processed_transcript MGP_C57BL6NJ_T0018818.1 MGP_C57BL6NJ_G0016059.1 mouse_genomes_project 7 47472576 47477891 + Gm15545 processed_transcript processed_transcript MGP_C57BL6NJ_T0082708.1 MGP_C57BL6NJ_G0032289.1 mouse_genomes_project 7 23834884 23861894 - MGP_C57BL6NJ_P0082708 Gm4763 protein_coding protein_coding MGP_C57BL6NJ_T0082709.1 MGP_C57BL6NJ_G0032289.1 mouse_genomes_project 7 23851417 23853059 - Gm4763 protein_coding processed_transcript MGP_C57BL6NJ_T0005445.1 MGP_C57BL6NJ_G0004615.1 mouse_genomes_project 7 130715511 130716450 + 1700069B07Rik antisense antisense MGP_C57BL6NJ_T0005446.1 MGP_C57BL6NJ_G0004615.1 mouse_genomes_project 7 130715625 130716448 + 1700069B07Rik antisense antisense MGP_C57BL6NJ_T0011954.1 MGP_C57BL6NJ_G0010039.1 mouse_genomes_project 7 97228307 97228517 - Gm27470 misc_RNA misc_RNA MGP_C57BL6NJ_T0084637.1 MGP_C57BL6NJ_G0032790.1 mouse_genomes_project 7 54993922 54995613 - MGP_C57BL6NJ_P0084637 Fancf protein_coding protein_coding MGP_C57BL6NJ_T0005465.1 MGP_C57BL6NJ_G0004632.1 mouse_genomes_project 7 142532038 142534289 + Gm16764 antisense antisense MGP_C57BL6NJ_T0005466.1 MGP_C57BL6NJ_G0004632.1 mouse_genomes_project 7 142532038 142534289 + Gm16764 antisense antisense MGP_C57BL6NJ_T0005467.1 MGP_C57BL6NJ_G0004632.1 mouse_genomes_project 7 142532054 142534289 + Gm16764 antisense antisense MGP_C57BL6NJ_T0009240.1 MGP_C57BL6NJ_G0007434.1 mouse_genomes_project 7 142833755 142885525 - 1500002F19Rik lincRNA lincRNA MGP_C57BL6NJ_T0002397.1 MGP_C57BL6NJ_G0002287.1 mouse_genomes_project 7 78419490 78422586 - TEC TEC MGP_C57BL6NJ_T0002398.1 MGP_C57BL6NJ_G0002287.1 mouse_genomes_project 7 78420454 78422479 - TEC TEC MGP_C57BL6NJ_T0009192.1 MGP_C57BL6NJ_G0007402.1 mouse_genomes_project 7 125121860 125124046 + 4732496C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0016314.1 MGP_C57BL6NJ_G0014359.1 mouse_genomes_project 7 90901145 90901791 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009139.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86851032 86857037 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009140.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86851045 86857629 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009141.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86851053 86858977 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009142.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86851053 86856921 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009143.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86851100 86856723 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009144.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86855882 86856994 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009145.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86856259 86857073 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009146.1 MGP_C57BL6NJ_G0007373.1 mouse_genomes_project 7 86856274 86858981 + 2900076A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0016261.1 MGP_C57BL6NJ_G0014306.1 mouse_genomes_project 7 46123725 46124030 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086007.1 MGP_C57BL6NJ_G0033120.1 mouse_genomes_project 7 110011350 110012307 - MGP_C57BL6NJ_P0086007 Olfr575 protein_coding protein_coding MGP_C57BL6NJ_T0100591.1 MGP_C57BL6NJ_G0038637.1 mouse_genomes_project 7 65839206 65839313 - Gm23431 snRNA snRNA MGP_C57BL6NJ_T0011190.1 MGP_C57BL6NJ_G0009275.1 mouse_genomes_project 7 150376352 150376409 - Mir7686 miRNA miRNA MGP_C57BL6NJ_T0103487.1 MGP_C57BL6NJ_G0041279.1 mouse_genomes_project 7 90343495 90345618 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011128.1 MGP_C57BL6NJ_G0009213.1 mouse_genomes_project 7 47990729 47990838 - Gm22133 miRNA miRNA MGP_C57BL6NJ_T0103477.1 MGP_C57BL6NJ_G0041269.1 mouse_genomes_project 7 50928734 50929698 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009058.1 MGP_C57BL6NJ_G0007314.1 mouse_genomes_project 7 46389064 46390153 - lincRNA lincRNA MGP_C57BL6NJ_T0083749.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35649095 35664494 - MGP_C57BL6NJ_P0083749 Kctd15 protein_coding protein_coding MGP_C57BL6NJ_T0083750.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35649096 35662933 - MGP_C57BL6NJ_P0083750 Kctd15 protein_coding protein_coding MGP_C57BL6NJ_T0083751.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35649100 35667324 - MGP_C57BL6NJ_P0083751 Kctd15 protein_coding protein_coding MGP_C57BL6NJ_T0083752.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35650263 35658835 - Kctd15 protein_coding processed_transcript MGP_C57BL6NJ_T0083753.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35660077 35664485 - MGP_C57BL6NJ_P0083753 Kctd15 protein_coding protein_coding MGP_C57BL6NJ_T0083754.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35662727 35663122 - Kctd15 protein_coding processed_transcript MGP_C57BL6NJ_T0083755.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35662727 35663408 - Kctd15 protein_coding processed_transcript MGP_C57BL6NJ_T0083756.1 MGP_C57BL6NJ_G0032542.1 mouse_genomes_project 7 35667184 35668547 - Kctd15 protein_coding processed_transcript MGP_C57BL6NJ_T0088042.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151717142 151721998 - MGP_C57BL6NJ_P0088042 Hras protein_coding protein_coding MGP_C57BL6NJ_T0088043.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151717971 151722042 - MGP_C57BL6NJ_P0088043 Hras protein_coding protein_coding MGP_C57BL6NJ_T0088044.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151718963 151722032 - Hras protein_coding retained_intron MGP_C57BL6NJ_T0088045.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151718963 151722043 - MGP_C57BL6NJ_P0088045 Hras protein_coding protein_coding MGP_C57BL6NJ_T0088046.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151718964 151720542 - Hras protein_coding processed_transcript MGP_C57BL6NJ_T0088047.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151718967 151720015 - Hras protein_coding processed_transcript MGP_C57BL6NJ_T0088048.1 MGP_C57BL6NJ_G0033708.1 mouse_genomes_project 7 151718967 151721920 - MGP_C57BL6NJ_P0088048 Hras protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087721.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802253 142825585 + MGP_C57BL6NJ_P0087721 Fam175b protein_coding protein_coding MGP_C57BL6NJ_T0087722.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802269 142829387 + MGP_C57BL6NJ_P0087722 Fam175b protein_coding protein_coding MGP_C57BL6NJ_T0087723.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802281 142825355 + MGP_C57BL6NJ_P0087723 Fam175b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087724.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802293 142820205 + Fam175b protein_coding retained_intron MGP_C57BL6NJ_T0087725.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802293 142829384 + MGP_C57BL6NJ_P0087725 Fam175b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087726.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142802351 142823088 + Fam175b protein_coding processed_transcript MGP_C57BL6NJ_T0087727.1 MGP_C57BL6NJ_G0033611.1 mouse_genomes_project 7 142823848 142829386 + Fam175b protein_coding retained_intron MGP_C57BL6NJ_T0086258.1 MGP_C57BL6NJ_G0033261.1 mouse_genomes_project 7 114527734 114528682 - MGP_C57BL6NJ_P0086258 Olfr694 protein_coding protein_coding MGP_C57BL6NJ_T0083319.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29752114 29767757 - MGP_C57BL6NJ_P0083319 Zfp27 protein_coding protein_coding MGP_C57BL6NJ_T0083320.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29752496 29761746 - MGP_C57BL6NJ_P0083320 Zfp27 protein_coding protein_coding MGP_C57BL6NJ_T0083321.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29752497 29767289 - MGP_C57BL6NJ_P0083321 Zfp27 protein_coding protein_coding MGP_C57BL6NJ_T0083322.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29752497 29767717 - MGP_C57BL6NJ_P0083322 Zfp27 protein_coding protein_coding MGP_C57BL6NJ_T0083323.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29752860 29758889 - MGP_C57BL6NJ_P0083323 Zfp27 protein_coding protein_coding MGP_C57BL6NJ_T0083324.1 MGP_C57BL6NJ_G0032440.1 mouse_genomes_project 7 29761511 29767245 - Zfp27 protein_coding processed_transcript MGP_C57BL6NJ_T0085769.1 MGP_C57BL6NJ_G0033054.1 mouse_genomes_project 7 107313433 107328659 - MGP_C57BL6NJ_P0085769 Dnajb13 protein_coding protein_coding MGP_C57BL6NJ_T0085770.1 MGP_C57BL6NJ_G0033054.1 mouse_genomes_project 7 107313436 107327098 - Dnajb13 protein_coding processed_transcript MGP_C57BL6NJ_T0085771.1 MGP_C57BL6NJ_G0033054.1 mouse_genomes_project 7 107313494 107325480 - Dnajb13 protein_coding processed_transcript MGP_C57BL6NJ_T0085786.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107466171 107480454 - MGP_C57BL6NJ_P0085786 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085787.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107466174 107484372 - MGP_C57BL6NJ_P0085787 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085788.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107466174 107484421 - MGP_C57BL6NJ_P0085788 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085789.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107466174 107478987 - MGP_C57BL6NJ_P0085789 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085790.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107466178 107480463 - MGP_C57BL6NJ_P0085790 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085791.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107467082 107475798 - Plekhb1 protein_coding retained_intron MGP_C57BL6NJ_T0085792.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107467224 107484322 - MGP_C57BL6NJ_P0085792 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085793.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107467846 107479110 - MGP_C57BL6NJ_P0085793 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0085794.1 MGP_C57BL6NJ_G0033058.1 mouse_genomes_project 7 107467914 107480429 - MGP_C57BL6NJ_P0085794 Plekhb1 protein_coding protein_coding MGP_C57BL6NJ_T0016181.1 MGP_C57BL6NJ_G0014226.1 mouse_genomes_project 7 26495626 26497992 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009244.1 MGP_C57BL6NJ_G0007437.1 mouse_genomes_project 7 145327248 145333077 - 1700120G07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009245.1 MGP_C57BL6NJ_G0007437.1 mouse_genomes_project 7 145328385 145333077 - 1700120G07Rik lincRNA lincRNA MGP_C57BL6NJ_T0083819.1 MGP_C57BL6NJ_G0032555.1 mouse_genomes_project 7 36662572 36671692 - MGP_C57BL6NJ_P0083819 Nudt19 protein_coding protein_coding MGP_C57BL6NJ_T0083820.1 MGP_C57BL6NJ_G0032555.1 mouse_genomes_project 7 36662908 36670582 - Nudt19 protein_coding processed_transcript MGP_C57BL6NJ_T0083821.1 MGP_C57BL6NJ_G0032555.1 mouse_genomes_project 7 36663363 36667431 - Nudt19 protein_coding retained_intron MGP_C57BL6NJ_T0002335.1 MGP_C57BL6NJ_G0002225.1 mouse_genomes_project 7 431283 432752 - TEC TEC MGP_C57BL6NJ_T0083903.1 MGP_C57BL6NJ_G0032572.1 mouse_genomes_project 7 43189282 43305963 - MGP_C57BL6NJ_P0083903 Gm20449 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084040.1 MGP_C57BL6NJ_G0032626.1 mouse_genomes_project 7 46304662 46308661 + MGP_C57BL6NJ_P0084040 Klk1b11 protein_coding protein_coding MGP_C57BL6NJ_T0087442.1 MGP_C57BL6NJ_G0033552.1 mouse_genomes_project 7 137407750 137410046 + Zfp646 protein_coding retained_intron MGP_C57BL6NJ_T0087443.1 MGP_C57BL6NJ_G0033552.1 mouse_genomes_project 7 137408325 137411718 + MGP_C57BL6NJ_P0087443 Zfp646 protein_coding protein_coding MGP_C57BL6NJ_T0087444.1 MGP_C57BL6NJ_G0033552.1 mouse_genomes_project 7 137409230 137417526 + MGP_C57BL6NJ_P0087444 Zfp646 protein_coding protein_coding MGP_C57BL6NJ_T0087445.1 MGP_C57BL6NJ_G0033552.1 mouse_genomes_project 7 137410840 137417522 + MGP_C57BL6NJ_P0087445 Zfp646 protein_coding protein_coding MGP_C57BL6NJ_T0011076.1 MGP_C57BL6NJ_G0009161.1 mouse_genomes_project 7 103154 103212 - Mir290b miRNA miRNA MGP_C57BL6NJ_T0009254.1 MGP_C57BL6NJ_G0007441.1 mouse_genomes_project 7 155691022 155693924 - Gm26793 lincRNA lincRNA MGP_C57BL6NJ_T0103403.1 MGP_C57BL6NJ_G0041195.1 mouse_genomes_project 7 32228876 32229261 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016383.1 MGP_C57BL6NJ_G0014428.1 mouse_genomes_project 7 138222838 138223138 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084827.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 69971469 70069160 + MGP_C57BL6NJ_P0084827 Pcsk6 protein_coding protein_coding MGP_C57BL6NJ_T0084828.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 69971764 70169706 + MGP_C57BL6NJ_P0084828 Pcsk6 protein_coding protein_coding MGP_C57BL6NJ_T0084829.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 69971871 70169654 + MGP_C57BL6NJ_P0084829 Pcsk6 protein_coding protein_coding MGP_C57BL6NJ_T0084830.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 69972167 70169660 + MGP_C57BL6NJ_P0084830 Pcsk6 protein_coding protein_coding MGP_C57BL6NJ_T0084831.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 70069187 70079369 + Pcsk6 protein_coding retained_intron MGP_C57BL6NJ_T0084832.1 MGP_C57BL6NJ_G0032829.1 mouse_genomes_project 7 70157737 70162848 + Pcsk6 protein_coding retained_intron MGP_C57BL6NJ_T0084465.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48486979 48510089 + MGP_C57BL6NJ_P0084465 Tmem143 protein_coding protein_coding MGP_C57BL6NJ_T0084466.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487119 48510089 + MGP_C57BL6NJ_P0084466 Tmem143 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084467.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487139 48510085 + MGP_C57BL6NJ_P0084467 Tmem143 protein_coding protein_coding MGP_C57BL6NJ_T0084468.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487458 48493555 + Tmem143 protein_coding retained_intron MGP_C57BL6NJ_T0084469.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487461 48500886 + Tmem143 protein_coding processed_transcript MGP_C57BL6NJ_T0084470.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487467 48500133 + Tmem143 protein_coding retained_intron MGP_C57BL6NJ_T0084471.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48487467 48502193 + MGP_C57BL6NJ_P0084471 Tmem143 protein_coding protein_coding MGP_C57BL6NJ_T0084472.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48501530 48502135 + Tmem143 protein_coding processed_transcript MGP_C57BL6NJ_T0084473.1 MGP_C57BL6NJ_G0032737.1 mouse_genomes_project 7 48508673 48509651 + Tmem143 protein_coding processed_transcript MGP_C57BL6NJ_T0081683.1 MGP_C57BL6NJ_G0031964.1 mouse_genomes_project 7 506258 512579 - MGP_C57BL6NJ_P0081683 Oscar protein_coding protein_coding MGP_C57BL6NJ_T0081684.1 MGP_C57BL6NJ_G0031964.1 mouse_genomes_project 7 506258 512603 - MGP_C57BL6NJ_P0081684 Oscar protein_coding protein_coding MGP_C57BL6NJ_T0081685.1 MGP_C57BL6NJ_G0031964.1 mouse_genomes_project 7 506258 512603 - MGP_C57BL6NJ_P0081685 Oscar protein_coding protein_coding MGP_C57BL6NJ_T0081686.1 MGP_C57BL6NJ_G0031964.1 mouse_genomes_project 7 507616 512531 - Oscar protein_coding processed_transcript MGP_C57BL6NJ_T0009071.1 MGP_C57BL6NJ_G0007324.1 mouse_genomes_project 7 67975463 67981982 - Gm45054 lincRNA lincRNA MGP_C57BL6NJ_T0086940.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135413436 135525182 - MGP_C57BL6NJ_P0086940 Xpo6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086941.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415089 135525689 - MGP_C57BL6NJ_P0086941 Xpo6 protein_coding protein_coding MGP_C57BL6NJ_T0086942.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415094 135423414 - Xpo6 protein_coding retained_intron MGP_C57BL6NJ_T0086943.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415094 135477440 - Xpo6 protein_coding processed_transcript MGP_C57BL6NJ_T0086944.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415094 135418171 - MGP_C57BL6NJ_P0086944 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086945.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415107 135420529 - MGP_C57BL6NJ_P0086945 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086946.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415442 135418384 - Xpo6 protein_coding retained_intron MGP_C57BL6NJ_T0086947.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135415719 135420492 - MGP_C57BL6NJ_P0086947 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086948.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135418119 135426253 - MGP_C57BL6NJ_P0086948 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086949.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135421883 135426185 - MGP_C57BL6NJ_P0086949 Xpo6 protein_coding protein_coding MGP_C57BL6NJ_T0086950.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135426258 135456366 - MGP_C57BL6NJ_P0086950 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086951.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135432747 135525703 - Xpo6 protein_coding retained_intron MGP_C57BL6NJ_T0086952.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135442497 135468770 - MGP_C57BL6NJ_P0086952 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086953.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135456346 135477581 - MGP_C57BL6NJ_P0086953 Xpo6 protein_coding protein_coding MGP_C57BL6NJ_T0086954.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135465030 135477589 - Xpo6 protein_coding processed_transcript MGP_C57BL6NJ_T0086955.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135467422 135525623 - Xpo6 protein_coding processed_transcript MGP_C57BL6NJ_T0086956.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135477576 135525209 - MGP_C57BL6NJ_P0086956 Xpo6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086957.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135487050 135503181 - Xpo6 protein_coding processed_transcript MGP_C57BL6NJ_T0086958.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135487050 135525694 - MGP_C57BL6NJ_P0086958 Xpo6 protein_coding protein_coding MGP_C57BL6NJ_T0086959.1 MGP_C57BL6NJ_G0033467.1 mouse_genomes_project 7 135501317 135508462 - Xpo6 protein_coding retained_intron MGP_C57BL6NJ_T0009110.1 MGP_C57BL6NJ_G0007354.1 mouse_genomes_project 7 78301903 78302638 - Gm44738 lincRNA lincRNA MGP_C57BL6NJ_T0005403.1 MGP_C57BL6NJ_G0004588.1 mouse_genomes_project 7 85613932 85616241 + Gm44851 antisense antisense MGP_C57BL6NJ_T0083688.1 MGP_C57BL6NJ_G0032523.1 mouse_genomes_project 7 34285258 34287232 - MGP_C57BL6NJ_P0083688 protein_coding protein_coding MGP_C57BL6NJ_T0083691.1 MGP_C57BL6NJ_G0032523.1 mouse_genomes_project 7 34286092 34287199 - protein_coding retained_intron MGP_C57BL6NJ_T0086121.1 MGP_C57BL6NJ_G0033212.1 mouse_genomes_project 7 112182975 112185212 - MGP_C57BL6NJ_P0086121 protein_coding protein_coding MGP_C57BL6NJ_T0086124.1 MGP_C57BL6NJ_G0033212.1 mouse_genomes_project 7 112183738 112185212 - MGP_C57BL6NJ_P0086124 protein_coding protein_coding MGP_C57BL6NJ_T0016325.1 MGP_C57BL6NJ_G0014370.1 mouse_genomes_project 7 101940402 101940769 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085425.1 MGP_C57BL6NJ_G0032968.1 mouse_genomes_project 7 92538455 92545529 + MGP_C57BL6NJ_P0085425 Olfr292 protein_coding protein_coding MGP_C57BL6NJ_T0016191.1 MGP_C57BL6NJ_G0014236.1 mouse_genomes_project 7 31594740 31595200 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103532.1 MGP_C57BL6NJ_G0041324.1 mouse_genomes_project 7 110882590 110883769 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085735.1 MGP_C57BL6NJ_G0033048.1 mouse_genomes_project 7 107013090 107066080 + MGP_C57BL6NJ_P0085735 Pgm2l1 protein_coding protein_coding MGP_C57BL6NJ_T0085736.1 MGP_C57BL6NJ_G0033048.1 mouse_genomes_project 7 107013384 107068097 + MGP_C57BL6NJ_P0085736 Pgm2l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085737.1 MGP_C57BL6NJ_G0033048.1 mouse_genomes_project 7 107013406 107069556 + MGP_C57BL6NJ_P0085737 Pgm2l1 protein_coding protein_coding MGP_C57BL6NJ_T0085409.1 MGP_C57BL6NJ_G0032953.1 mouse_genomes_project 7 92005252 92025054 - MGP_C57BL6NJ_P0085409 Vmn2r76 protein_coding protein_coding MGP_C57BL6NJ_T0086782.1 MGP_C57BL6NJ_G0033432.1 mouse_genomes_project 7 129998972 130000817 - MGP_C57BL6NJ_P0086782 protein_coding protein_coding MGP_C57BL6NJ_T0018806.1 MGP_C57BL6NJ_G0016056.1 mouse_genomes_project 7 45929146 46049740 - 2310002F09Rik processed_transcript antisense MGP_C57BL6NJ_T0018807.1 MGP_C57BL6NJ_G0016056.1 mouse_genomes_project 7 45982797 45986125 - 2310002F09Rik processed_transcript antisense MGP_C57BL6NJ_T0018808.1 MGP_C57BL6NJ_G0016056.1 mouse_genomes_project 7 45995055 45995660 - 2310002F09Rik processed_transcript TEC MGP_C57BL6NJ_T0018809.1 MGP_C57BL6NJ_G0016056.1 mouse_genomes_project 7 46048618 46049753 - 2310002F09Rik processed_transcript antisense MGP_C57BL6NJ_T0002409.1 MGP_C57BL6NJ_G0002298.1 mouse_genomes_project 7 81629948 81631525 - TEC TEC MGP_C57BL6NJ_T0103529.1 MGP_C57BL6NJ_G0041321.1 mouse_genomes_project 7 110588536 110589503 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082413.1 MGP_C57BL6NJ_G0032202.1 mouse_genomes_project 7 17893065 17917913 + MGP_C57BL6NJ_P0082413 Rsph6a protein_coding protein_coding MGP_C57BL6NJ_T0082414.1 MGP_C57BL6NJ_G0032202.1 mouse_genomes_project 7 17893074 17917913 + MGP_C57BL6NJ_P0082414 Rsph6a protein_coding protein_coding MGP_C57BL6NJ_T0082415.1 MGP_C57BL6NJ_G0032202.1 mouse_genomes_project 7 17895770 17905030 + Rsph6a protein_coding processed_transcript MGP_C57BL6NJ_T0082142.1 MGP_C57BL6NJ_G0032112.1 mouse_genomes_project 7 11190258 11191209 + MGP_C57BL6NJ_P0082142 Vmn1r89 protein_coding protein_coding MGP_C57BL6NJ_T0083454.1 MGP_C57BL6NJ_G0032476.1 mouse_genomes_project 7 30515059 30518325 + Hspb6 protein_coding processed_transcript MGP_C57BL6NJ_T0083455.1 MGP_C57BL6NJ_G0032476.1 mouse_genomes_project 7 30515405 30518324 + Hspb6 protein_coding processed_transcript MGP_C57BL6NJ_T0083456.1 MGP_C57BL6NJ_G0032476.1 mouse_genomes_project 7 30516149 30518328 + MGP_C57BL6NJ_P0083456 Hspb6 protein_coding protein_coding MGP_C57BL6NJ_T0083457.1 MGP_C57BL6NJ_G0032476.1 mouse_genomes_project 7 30516769 30517529 + Hspb6 protein_coding processed_transcript MGP_C57BL6NJ_T0085993.1 MGP_C57BL6NJ_G0033107.1 mouse_genomes_project 7 109725815 109726872 + MGP_C57BL6NJ_P0085993 Olfr557 protein_coding protein_coding MGP_C57BL6NJ_T0085706.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106383878 106441781 - MGP_C57BL6NJ_P0085706 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0085707.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106384463 106426280 - MGP_C57BL6NJ_P0085707 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0085708.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106384463 106437602 - MGP_C57BL6NJ_P0085708 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0085709.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106385931 106391007 - MGP_C57BL6NJ_P0085709 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0085710.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106417801 106426099 - MGP_C57BL6NJ_P0085710 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0085711.1 MGP_C57BL6NJ_G0033037.1 mouse_genomes_project 7 106419402 106426053 - MGP_C57BL6NJ_P0085711 Slco2b1 protein_coding protein_coding MGP_C57BL6NJ_T0100592.1 MGP_C57BL6NJ_G0038638.1 mouse_genomes_project 7 67467896 67467997 + Gm22228 snRNA snRNA MGP_C57BL6NJ_T0086436.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119104951 119165588 - MGP_C57BL6NJ_P0086436 Mrvi1 protein_coding protein_coding MGP_C57BL6NJ_T0086437.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119104957 119184921 - MGP_C57BL6NJ_P0086437 Mrvi1 protein_coding protein_coding MGP_C57BL6NJ_T0086438.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119108044 119184626 - MGP_C57BL6NJ_P0086438 Mrvi1 protein_coding protein_coding MGP_C57BL6NJ_T0086439.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119158980 119162888 - Mrvi1 protein_coding processed_transcript MGP_C57BL6NJ_T0086440.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119163534 119165857 - Mrvi1 protein_coding retained_intron MGP_C57BL6NJ_T0086441.1 MGP_C57BL6NJ_G0033356.1 mouse_genomes_project 7 119165569 119220809 - MGP_C57BL6NJ_P0086441 Mrvi1 protein_coding protein_coding MGP_C57BL6NJ_T0098890.1 MGP_C57BL6NJ_G0036954.1 mouse_genomes_project 7 87364394 87365011 + pseudogene pseudogene MGP_C57BL6NJ_T0083055.1 MGP_C57BL6NJ_G0032374.1 mouse_genomes_project 7 27462072 27487429 + MGP_C57BL6NJ_P0083055 Zfp607a protein_coding protein_coding MGP_C57BL6NJ_T0083056.1 MGP_C57BL6NJ_G0032374.1 mouse_genomes_project 7 27465184 27487772 + MGP_C57BL6NJ_P0083056 Zfp607a protein_coding protein_coding MGP_C57BL6NJ_T0083057.1 MGP_C57BL6NJ_G0032374.1 mouse_genomes_project 7 27467789 27486514 + MGP_C57BL6NJ_P0083057 Zfp607a protein_coding protein_coding MGP_C57BL6NJ_T0016157.1 MGP_C57BL6NJ_G0014202.1 mouse_genomes_project 7 15632090 15632692 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082557.1 MGP_C57BL6NJ_G0032240.1 mouse_genomes_project 7 18616643 18634985 - MGP_C57BL6NJ_P0082557 Tomm40 protein_coding protein_coding MGP_C57BL6NJ_T0082558.1 MGP_C57BL6NJ_G0032240.1 mouse_genomes_project 7 18616659 18634972 - MGP_C57BL6NJ_P0082558 Tomm40 protein_coding protein_coding MGP_C57BL6NJ_T0082559.1 MGP_C57BL6NJ_G0032240.1 mouse_genomes_project 7 18617151 18630512 - Tomm40 protein_coding retained_intron MGP_C57BL6NJ_T0082560.1 MGP_C57BL6NJ_G0032240.1 mouse_genomes_project 7 18617995 18618471 - MGP_C57BL6NJ_P0082560 Tomm40 protein_coding protein_coding MGP_C57BL6NJ_T0082561.1 MGP_C57BL6NJ_G0032240.1 mouse_genomes_project 7 18630960 18634975 - Tomm40 protein_coding retained_intron MGP_C57BL6NJ_T0016318.1 MGP_C57BL6NJ_G0014363.1 mouse_genomes_project 7 94359459 94360015 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084628.1 MGP_C57BL6NJ_G0032786.1 mouse_genomes_project 7 52970623 53566227 + MGP_C57BL6NJ_P0084628 Nell1 protein_coding protein_coding MGP_C57BL6NJ_T0084629.1 MGP_C57BL6NJ_G0032786.1 mouse_genomes_project 7 52970623 53919363 + MGP_C57BL6NJ_P0084629 Nell1 protein_coding protein_coding MGP_C57BL6NJ_T0084630.1 MGP_C57BL6NJ_G0032786.1 mouse_genomes_project 7 52970828 53281834 + Nell1 protein_coding retained_intron MGP_C57BL6NJ_T0084631.1 MGP_C57BL6NJ_G0032786.1 mouse_genomes_project 7 52971093 53917466 + MGP_C57BL6NJ_P0084631 Nell1 protein_coding protein_coding MGP_C57BL6NJ_T0084632.1 MGP_C57BL6NJ_G0032786.1 mouse_genomes_project 7 53102682 53230067 + Nell1 protein_coding processed_transcript MGP_C57BL6NJ_T0103531.1 MGP_C57BL6NJ_G0041323.1 mouse_genomes_project 7 110864535 110864820 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081972.1 MGP_C57BL6NJ_G0032033.1 mouse_genomes_project 7 2394958 2403668 + MGP_C57BL6NJ_P0081972 Gm5065 protein_coding protein_coding MGP_C57BL6NJ_T0016258.1 MGP_C57BL6NJ_G0014303.1 mouse_genomes_project 7 45586254 45586519 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082576.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18743977 18746637 - MGP_C57BL6NJ_P0082576 Bcl3 protein_coding protein_coding MGP_C57BL6NJ_T0082577.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18743977 18758188 - MGP_C57BL6NJ_P0082577 Bcl3 protein_coding protein_coding MGP_C57BL6NJ_T0082578.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18746632 18747405 - Bcl3 protein_coding retained_intron MGP_C57BL6NJ_T0082579.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18746864 18748349 - Bcl3 protein_coding retained_intron MGP_C57BL6NJ_T0082580.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18747010 18751512 - Bcl3 protein_coding processed_transcript MGP_C57BL6NJ_T0082581.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18747101 18757575 - MGP_C57BL6NJ_P0082581 Bcl3 protein_coding protein_coding MGP_C57BL6NJ_T0082582.1 MGP_C57BL6NJ_G0032244.1 mouse_genomes_project 7 18747910 18758188 - Bcl3 protein_coding processed_transcript MGP_C57BL6NJ_T0098891.1 MGP_C57BL6NJ_G0036955.1 mouse_genomes_project 7 99346544 99348380 + pseudogene pseudogene MGP_C57BL6NJ_T0087826.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179024 149204642 + Ppp2r2d protein_coding retained_intron MGP_C57BL6NJ_T0087827.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179331 149202724 + MGP_C57BL6NJ_P0087827 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087828.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179426 149215433 + MGP_C57BL6NJ_P0087828 Ppp2r2d protein_coding protein_coding MGP_C57BL6NJ_T0087829.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179532 149202767 + Ppp2r2d protein_coding processed_transcript MGP_C57BL6NJ_T0087830.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179565 149209508 + MGP_C57BL6NJ_P0087830 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087831.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149179805 149202742 + Ppp2r2d protein_coding processed_transcript MGP_C57BL6NJ_T0087832.1 MGP_C57BL6NJ_G0033637.1 mouse_genomes_project 7 149201349 149209502 + MGP_C57BL6NJ_P0087832 Ppp2r2d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002411.1 MGP_C57BL6NJ_G0002300.1 mouse_genomes_project 7 83190573 83191663 - TEC TEC MGP_C57BL6NJ_T0082520.1 MGP_C57BL6NJ_G0032230.1 mouse_genomes_project 7 18421621 18457312 - MGP_C57BL6NJ_P0082520 Ppp1r37 protein_coding protein_coding MGP_C57BL6NJ_T0018896.1 MGP_C57BL6NJ_G0016092.1 mouse_genomes_project 7 150367692 150382114 + Gm16201 processed_transcript processed_transcript MGP_C57BL6NJ_T0018897.1 MGP_C57BL6NJ_G0016092.1 mouse_genomes_project 7 150367736 150397663 + Gm16201 processed_transcript processed_transcript MGP_C57BL6NJ_T0016288.1 MGP_C57BL6NJ_G0014333.1 mouse_genomes_project 7 70249157 70249903 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086030.1 MGP_C57BL6NJ_G0033141.1 mouse_genomes_project 7 110573337 110574297 + MGP_C57BL6NJ_P0086030 Olfr606 protein_coding protein_coding MGP_C57BL6NJ_T0103413.1 MGP_C57BL6NJ_G0041205.1 mouse_genomes_project 7 34558721 34559091 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082358.1 MGP_C57BL6NJ_G0032175.1 mouse_genomes_project 7 15646460 15663698 + MGP_C57BL6NJ_P0082358 Ceacam3 protein_coding protein_coding MGP_C57BL6NJ_T0088244.1 MGP_C57BL6NJ_G0033746.1 mouse_genomes_project 7 152898786 152900612 + MGP_C57BL6NJ_P0088244 protein_coding protein_coding MGP_C57BL6NJ_T0086305.1 MGP_C57BL6NJ_G0033300.1 mouse_genomes_project 7 116028301 116029246 - MGP_C57BL6NJ_P0086305 Olfr478 protein_coding protein_coding MGP_C57BL6NJ_T0082888.1 MGP_C57BL6NJ_G0032329.1 mouse_genomes_project 7 25249045 25286370 + MGP_C57BL6NJ_P0082888 Cyp2b10 protein_coding protein_coding MGP_C57BL6NJ_T0082889.1 MGP_C57BL6NJ_G0032329.1 mouse_genomes_project 7 25249101 25286305 + MGP_C57BL6NJ_P0082889 Cyp2b10 protein_coding protein_coding MGP_C57BL6NJ_T0082890.1 MGP_C57BL6NJ_G0032329.1 mouse_genomes_project 7 25274152 25274817 + Cyp2b10 protein_coding retained_intron MGP_C57BL6NJ_T0084012.1 MGP_C57BL6NJ_G0032612.1 mouse_genomes_project 7 45949910 45964874 + MGP_C57BL6NJ_P0084012 Klk13 protein_coding protein_coding MGP_C57BL6NJ_T0084013.1 MGP_C57BL6NJ_G0032612.1 mouse_genomes_project 7 45950742 45958651 + MGP_C57BL6NJ_P0084013 Klk13 protein_coding protein_coding MGP_C57BL6NJ_T0084014.1 MGP_C57BL6NJ_G0032612.1 mouse_genomes_project 7 45952302 45961207 + MGP_C57BL6NJ_P0084014 Klk13 protein_coding protein_coding MGP_C57BL6NJ_T0085107.1 MGP_C57BL6NJ_G0032878.1 mouse_genomes_project 7 84857837 84905396 + MGP_C57BL6NJ_P0085107 Wdr93 protein_coding protein_coding MGP_C57BL6NJ_T0103546.1 MGP_C57BL6NJ_G0041338.1 mouse_genomes_project 7 114191789 114437177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082376.1 MGP_C57BL6NJ_G0032189.1 mouse_genomes_project 7 17511007 17522869 + MGP_C57BL6NJ_P0082376 Psg22 protein_coding protein_coding MGP_C57BL6NJ_T0082377.1 MGP_C57BL6NJ_G0032189.1 mouse_genomes_project 7 17511007 17522871 + MGP_C57BL6NJ_P0082377 Psg22 protein_coding protein_coding MGP_C57BL6NJ_T0002456.1 MGP_C57BL6NJ_G0002345.1 mouse_genomes_project 7 137429179 137429888 + TEC TEC MGP_C57BL6NJ_T0083888.1 MGP_C57BL6NJ_G0032566.1 mouse_genomes_project 7 39589162 39600203 - MGP_C57BL6NJ_P0083888 Plekhf1 protein_coding protein_coding MGP_C57BL6NJ_T0086164.1 MGP_C57BL6NJ_G0033245.1 mouse_genomes_project 7 113170296 113174325 + MGP_C57BL6NJ_P0086164 Smpd1 protein_coding protein_coding MGP_C57BL6NJ_T0085918.1 MGP_C57BL6NJ_G0033080.1 mouse_genomes_project 7 109007343 109010420 - MGP_C57BL6NJ_P0085918 Il18bp protein_coding protein_coding MGP_C57BL6NJ_T0082892.1 MGP_C57BL6NJ_G0032331.1 mouse_genomes_project 7 25617013 25618070 + MGP_C57BL6NJ_P0082892 Vmn1r184 protein_coding protein_coding MGP_C57BL6NJ_T0084750.1 MGP_C57BL6NJ_G0032816.1 mouse_genomes_project 7 67781871 67842988 - MGP_C57BL6NJ_P0084750 Klf13 protein_coding protein_coding MGP_C57BL6NJ_T0084751.1 MGP_C57BL6NJ_G0032816.1 mouse_genomes_project 7 67785579 67840374 - MGP_C57BL6NJ_P0084751 Klf13 protein_coding protein_coding MGP_C57BL6NJ_T0084752.1 MGP_C57BL6NJ_G0032816.1 mouse_genomes_project 7 67785596 67824195 - MGP_C57BL6NJ_P0084752 Klf13 protein_coding protein_coding MGP_C57BL6NJ_T0084754.1 MGP_C57BL6NJ_G0032816.1 mouse_genomes_project 7 67839471 67840405 - Klf13 protein_coding retained_intron MGP_C57BL6NJ_T0011186.1 MGP_C57BL6NJ_G0009271.1 mouse_genomes_project 7 140675433 140675501 + Mir7061 miRNA miRNA MGP_C57BL6NJ_T0011956.1 MGP_C57BL6NJ_G0010041.1 mouse_genomes_project 7 101621616 101621910 + Gm23884 misc_RNA misc_RNA MGP_C57BL6NJ_T0016286.1 MGP_C57BL6NJ_G0014331.1 mouse_genomes_project 7 69222213 69222787 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009024.1 MGP_C57BL6NJ_G0007291.1 mouse_genomes_project 7 38420005 38428705 - Gm28078 lincRNA lincRNA MGP_C57BL6NJ_T0087848.1 MGP_C57BL6NJ_G0033641.1 mouse_genomes_project 7 149424271 149533568 - MGP_C57BL6NJ_P0087848 Stk32c protein_coding protein_coding MGP_C57BL6NJ_T0087849.1 MGP_C57BL6NJ_G0033641.1 mouse_genomes_project 7 149424271 149507757 - MGP_C57BL6NJ_P0087849 Stk32c protein_coding protein_coding MGP_C57BL6NJ_T0002364.1 MGP_C57BL6NJ_G0002254.1 mouse_genomes_project 7 45924977 45925430 + TEC TEC MGP_C57BL6NJ_T0083681.1 MGP_C57BL6NJ_G0032517.1 mouse_genomes_project 7 31460735 31462060 + MGP_C57BL6NJ_P0083681 Scgb1b3 protein_coding protein_coding MGP_C57BL6NJ_T0083719.1 MGP_C57BL6NJ_G0032537.1 mouse_genomes_project 7 35156026 35170579 - MGP_C57BL6NJ_P0083719 Pdcd2l protein_coding protein_coding MGP_C57BL6NJ_T0083720.1 MGP_C57BL6NJ_G0032537.1 mouse_genomes_project 7 35156160 35170526 - MGP_C57BL6NJ_P0083720 Pdcd2l protein_coding protein_coding MGP_C57BL6NJ_T0083721.1 MGP_C57BL6NJ_G0032537.1 mouse_genomes_project 7 35160478 35164349 - Pdcd2l protein_coding retained_intron MGP_C57BL6NJ_T0083722.1 MGP_C57BL6NJ_G0032537.1 mouse_genomes_project 7 35164410 35170064 - Pdcd2l protein_coding processed_transcript MGP_C57BL6NJ_T0083680.1 MGP_C57BL6NJ_G0032516.1 mouse_genomes_project 7 31444751 31449242 - MGP_C57BL6NJ_P0083680 Scgb2b3 protein_coding protein_coding MGP_C57BL6NJ_T0103378.1 MGP_C57BL6NJ_G0041171.1 mouse_genomes_project 7 15678196 15679187 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005398.1 MGP_C57BL6NJ_G0004585.1 mouse_genomes_project 7 85042805 85046510 + Gm26646 antisense antisense MGP_C57BL6NJ_T0005399.1 MGP_C57BL6NJ_G0004585.1 mouse_genomes_project 7 85044837 85046510 + Gm26646 antisense antisense MGP_C57BL6NJ_T0002347.1 MGP_C57BL6NJ_G0002237.1 mouse_genomes_project 7 36105798 36106415 - TEC TEC MGP_C57BL6NJ_T0086401.1 MGP_C57BL6NJ_G0033349.1 mouse_genomes_project 7 118296262 118317693 + MGP_C57BL6NJ_P0086401 Wee1 protein_coding protein_coding MGP_C57BL6NJ_T0086310.1 MGP_C57BL6NJ_G0033305.1 mouse_genomes_project 7 116105883 116106948 + MGP_C57BL6NJ_P0086310 Olfr483 protein_coding protein_coding MGP_C57BL6NJ_T0088242.1 MGP_C57BL6NJ_G0033744.1 mouse_genomes_project 7 152891578 152892408 - MGP_C57BL6NJ_P0088242 protein_coding protein_coding MGP_C57BL6NJ_T0087715.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142770652 142795711 - MGP_C57BL6NJ_P0087715 Mettl10 protein_coding protein_coding MGP_C57BL6NJ_T0087716.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142770804 142795654 - MGP_C57BL6NJ_P0087716 Mettl10 protein_coding protein_coding MGP_C57BL6NJ_T0087717.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142770976 142795417 - Mettl10 protein_coding processed_transcript MGP_C57BL6NJ_T0087718.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142774571 142795653 - MGP_C57BL6NJ_P0087718 Mettl10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087719.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142774579 142795623 - MGP_C57BL6NJ_P0087719 Mettl10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087720.1 MGP_C57BL6NJ_G0033610.1 mouse_genomes_project 7 142793143 142795677 - Mettl10 protein_coding processed_transcript MGP_C57BL6NJ_T0005456.1 MGP_C57BL6NJ_G0004624.1 mouse_genomes_project 7 137096791 137102314 - Gm44759 antisense antisense MGP_C57BL6NJ_T0082683.1 MGP_C57BL6NJ_G0032281.1 mouse_genomes_project 7 23624231 23630718 - MGP_C57BL6NJ_P0082683 Pinlyp protein_coding protein_coding MGP_C57BL6NJ_T0012122.1 MGP_C57BL6NJ_G0010167.1 mouse_genomes_project 7 711183 765697 - MGP_C57BL6NJ_P0012122 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0103377.1 MGP_C57BL6NJ_G0041170.1 mouse_genomes_project 7 15482474 15482835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081864.1 MGP_C57BL6NJ_G0031995.1 mouse_genomes_project 7 1606239 1608682 - MGP_C57BL6NJ_P0081864 Tmem86b protein_coding protein_coding MGP_C57BL6NJ_T0081865.1 MGP_C57BL6NJ_G0031995.1 mouse_genomes_project 7 1606241 1608387 - MGP_C57BL6NJ_P0081865 Tmem86b protein_coding protein_coding MGP_C57BL6NJ_T0081866.1 MGP_C57BL6NJ_G0031995.1 mouse_genomes_project 7 1606605 1609622 - MGP_C57BL6NJ_P0081866 Tmem86b protein_coding protein_coding MGP_C57BL6NJ_T0081867.1 MGP_C57BL6NJ_G0031995.1 mouse_genomes_project 7 1606803 1608536 - MGP_C57BL6NJ_P0081867 Tmem86b protein_coding protein_coding MGP_C57BL6NJ_T0085867.1 MGP_C57BL6NJ_G0033072.1 mouse_genomes_project 7 108780678 108787335 - Inppl1 protein_coding processed_transcript MGP_C57BL6NJ_T0085868.1 MGP_C57BL6NJ_G0033072.1 mouse_genomes_project 7 108780716 108795575 - MGP_C57BL6NJ_P0085868 Inppl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085869.1 MGP_C57BL6NJ_G0033072.1 mouse_genomes_project 7 108782012 108795853 - MGP_C57BL6NJ_P0085869 Inppl1 protein_coding protein_coding MGP_C57BL6NJ_T0100601.1 MGP_C57BL6NJ_G0038647.1 mouse_genomes_project 7 97353765 97353868 + Gm24552 snRNA snRNA MGP_C57BL6NJ_T0002442.1 MGP_C57BL6NJ_G0002331.1 mouse_genomes_project 7 131672437 131673784 + TEC TEC MGP_C57BL6NJ_T0088243.1 MGP_C57BL6NJ_G0033745.1 mouse_genomes_project 7 152891578 152892415 - MGP_C57BL6NJ_P0088243 protein_coding protein_coding MGP_C57BL6NJ_T0082604.1 MGP_C57BL6NJ_G0032257.1 mouse_genomes_project 7 22615530 22706823 + MGP_C57BL6NJ_P0082604 Vmn1r172 protein_coding protein_coding MGP_C57BL6NJ_T0082605.1 MGP_C57BL6NJ_G0032257.1 mouse_genomes_project 7 22615635 22706821 + MGP_C57BL6NJ_P0082605 Vmn1r172 protein_coding protein_coding MGP_C57BL6NJ_T0005342.1 MGP_C57BL6NJ_G0004544.1 mouse_genomes_project 7 30414778 30418200 - Nphs1os antisense antisense MGP_C57BL6NJ_T0084856.1 MGP_C57BL6NJ_G0032835.1 mouse_genomes_project 7 70534782 70571483 - MGP_C57BL6NJ_P0084856 Aldh1a3 protein_coding protein_coding MGP_C57BL6NJ_T0084857.1 MGP_C57BL6NJ_G0032835.1 mouse_genomes_project 7 70543782 70549890 - Aldh1a3 protein_coding retained_intron MGP_C57BL6NJ_T0084858.1 MGP_C57BL6NJ_G0032835.1 mouse_genomes_project 7 70545936 70563201 - MGP_C57BL6NJ_P0084858 Aldh1a3 protein_coding protein_coding MGP_C57BL6NJ_T0084859.1 MGP_C57BL6NJ_G0032835.1 mouse_genomes_project 7 70552398 70570555 - Aldh1a3 protein_coding processed_transcript MGP_C57BL6NJ_T0084860.1 MGP_C57BL6NJ_G0032835.1 mouse_genomes_project 7 70552922 70569667 - Aldh1a3 protein_coding processed_transcript MGP_C57BL6NJ_T0084504.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49088821 49292633 - MGP_C57BL6NJ_P0084504 Sergef protein_coding protein_coding MGP_C57BL6NJ_T0084505.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49088874 49252931 - Sergef protein_coding processed_transcript MGP_C57BL6NJ_T0084506.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49089127 49264477 - Sergef protein_coding processed_transcript MGP_C57BL6NJ_T0084507.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49284014 49287302 - Sergef protein_coding retained_intron MGP_C57BL6NJ_T0084508.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49284036 49292457 - MGP_C57BL6NJ_P0084508 Sergef protein_coding protein_coding MGP_C57BL6NJ_T0084509.1 MGP_C57BL6NJ_G0032748.1 mouse_genomes_project 7 49284050 49292406 - Sergef protein_coding processed_transcript MGP_C57BL6NJ_T0009113.1 MGP_C57BL6NJ_G0007357.1 mouse_genomes_project 7 78466212 78503174 - Gm10619 lincRNA lincRNA MGP_C57BL6NJ_T0009114.1 MGP_C57BL6NJ_G0007357.1 mouse_genomes_project 7 78494964 78503246 - Gm10619 lincRNA lincRNA MGP_C57BL6NJ_T0081714.1 MGP_C57BL6NJ_G0031969.1 mouse_genomes_project 7 563528 569233 - MGP_C57BL6NJ_P0081714 Leng1 protein_coding protein_coding MGP_C57BL6NJ_T0082699.1 MGP_C57BL6NJ_G0032285.1 mouse_genomes_project 7 23700553 23719672 + MGP_C57BL6NJ_P0082699 Phldb3 protein_coding protein_coding MGP_C57BL6NJ_T0082700.1 MGP_C57BL6NJ_G0032285.1 mouse_genomes_project 7 23701118 23719663 + MGP_C57BL6NJ_P0082700 Phldb3 protein_coding protein_coding MGP_C57BL6NJ_T0082701.1 MGP_C57BL6NJ_G0032285.1 mouse_genomes_project 7 23708675 23717019 + Phldb3 protein_coding retained_intron MGP_C57BL6NJ_T0082702.1 MGP_C57BL6NJ_G0032285.1 mouse_genomes_project 7 23709077 23711966 + Phldb3 protein_coding processed_transcript MGP_C57BL6NJ_T0016182.1 MGP_C57BL6NJ_G0014227.1 mouse_genomes_project 7 26497186 26498000 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008979.1 MGP_C57BL6NJ_G0007251.1 mouse_genomes_project 7 377354 406559 + Gm44160 lincRNA lincRNA MGP_C57BL6NJ_T0103492.1 MGP_C57BL6NJ_G0041284.1 mouse_genomes_project 7 90678653 90695888 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101847.1 MGP_C57BL6NJ_G0039893.1 mouse_genomes_project 7 28005908 28006033 + AF357399 snoRNA snoRNA MGP_C57BL6NJ_T0083529.1 MGP_C57BL6NJ_G0032489.1 mouse_genomes_project 7 30673976 30674574 + MGP_C57BL6NJ_P0083529 2200002J24Rik protein_coding protein_coding MGP_C57BL6NJ_T0082592.1 MGP_C57BL6NJ_G0032251.1 mouse_genomes_project 7 18936329 18971087 + MGP_C57BL6NJ_P0082592 Ceacam20 protein_coding protein_coding MGP_C57BL6NJ_T0087224.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136436038 136439719 - MGP_C57BL6NJ_P0087224 Prrt2 protein_coding protein_coding MGP_C57BL6NJ_T0087225.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136436050 136439482 - Prrt2 protein_coding retained_intron MGP_C57BL6NJ_T0087226.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136436155 136438410 - MGP_C57BL6NJ_P0087226 Prrt2 protein_coding protein_coding MGP_C57BL6NJ_T0087227.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136436665 136438103 - MGP_C57BL6NJ_P0087227 Prrt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087228.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136437014 136439464 - Prrt2 protein_coding processed_transcript MGP_C57BL6NJ_T0087229.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136437211 136439645 - MGP_C57BL6NJ_P0087229 Prrt2 protein_coding protein_coding MGP_C57BL6NJ_T0087230.1 MGP_C57BL6NJ_G0033510.1 mouse_genomes_project 7 136437902 136438863 - Prrt2 protein_coding processed_transcript MGP_C57BL6NJ_T0087889.1 MGP_C57BL6NJ_G0033649.1 mouse_genomes_project 7 150361043 150362367 + MGP_C57BL6NJ_P0087889 Utf1 protein_coding protein_coding MGP_C57BL6NJ_T0086038.1 MGP_C57BL6NJ_G0033149.1 mouse_genomes_project 7 110715143 110716097 - MGP_C57BL6NJ_P0086038 Olfr616 protein_coding protein_coding MGP_C57BL6NJ_T0005329.1 MGP_C57BL6NJ_G0004535.1 mouse_genomes_project 7 24642541 24718397 + antisense antisense MGP_C57BL6NJ_T0005330.1 MGP_C57BL6NJ_G0004535.1 mouse_genomes_project 7 24642545 24652920 + antisense antisense MGP_C57BL6NJ_T0005331.1 MGP_C57BL6NJ_G0004535.1 mouse_genomes_project 7 24651988 24652757 + antisense antisense MGP_C57BL6NJ_T0005332.1 MGP_C57BL6NJ_G0004535.1 mouse_genomes_project 7 24662674 24861454 + antisense antisense MGP_C57BL6NJ_T0085460.1 MGP_C57BL6NJ_G0032979.1 mouse_genomes_project 7 95481023 95490823 - MGP_C57BL6NJ_P0085460 Prss23 protein_coding protein_coding MGP_C57BL6NJ_T0081920.1 MGP_C57BL6NJ_G0032007.1 mouse_genomes_project 7 1798354 1817111 - MGP_C57BL6NJ_P0081920 Ube2s protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081921.1 MGP_C57BL6NJ_G0032007.1 mouse_genomes_project 7 1811786 1815879 - Ube2s protein_coding retained_intron MGP_C57BL6NJ_T0081922.1 MGP_C57BL6NJ_G0032007.1 mouse_genomes_project 7 1812773 1817350 - MGP_C57BL6NJ_P0081922 Ube2s protein_coding protein_coding MGP_C57BL6NJ_T0081923.1 MGP_C57BL6NJ_G0032007.1 mouse_genomes_project 7 1813181 1816884 - MGP_C57BL6NJ_P0081923 Ube2s protein_coding protein_coding MGP_C57BL6NJ_T0081924.1 MGP_C57BL6NJ_G0032007.1 mouse_genomes_project 7 1815202 1816666 - MGP_C57BL6NJ_P0081924 Ube2s protein_coding protein_coding MGP_C57BL6NJ_T0087145.1 MGP_C57BL6NJ_G0033496.1 mouse_genomes_project 7 136228561 136229590 - MGP_C57BL6NJ_P0087145 4930451I11Rik protein_coding protein_coding MGP_C57BL6NJ_T0087146.1 MGP_C57BL6NJ_G0033496.1 mouse_genomes_project 7 136228562 136229733 - 4930451I11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0087147.1 MGP_C57BL6NJ_G0033496.1 mouse_genomes_project 7 136228570 136229566 - MGP_C57BL6NJ_P0087147 4930451I11Rik protein_coding protein_coding MGP_C57BL6NJ_T0086015.1 MGP_C57BL6NJ_G0033127.1 mouse_genomes_project 7 110181221 110182706 + MGP_C57BL6NJ_P0086015 Olfr585 protein_coding protein_coding MGP_C57BL6NJ_T0082075.1 MGP_C57BL6NJ_G0032092.1 mouse_genomes_project 7 10548254 10641841 - MGP_C57BL6NJ_P0082075 Vmn2r56 protein_coding protein_coding MGP_C57BL6NJ_T0084350.1 MGP_C57BL6NJ_G0032708.1 mouse_genomes_project 7 48012469 48031410 - MGP_C57BL6NJ_P0084350 Dhdh protein_coding protein_coding MGP_C57BL6NJ_T0084351.1 MGP_C57BL6NJ_G0032708.1 mouse_genomes_project 7 48016345 48020329 - Dhdh protein_coding processed_transcript MGP_C57BL6NJ_T0002394.1 MGP_C57BL6NJ_G0002284.1 mouse_genomes_project 7 78120044 78122081 - TEC TEC MGP_C57BL6NJ_T0011946.1 MGP_C57BL6NJ_G0010031.1 mouse_genomes_project 7 30248389 30248760 + Gm24757 misc_RNA misc_RNA MGP_C57BL6NJ_T0086116.1 MGP_C57BL6NJ_G0033207.1 mouse_genomes_project 7 112035801 112037613 - MGP_C57BL6NJ_P0086116 protein_coding protein_coding MGP_C57BL6NJ_T0087495.1 MGP_C57BL6NJ_G0033563.1 mouse_genomes_project 7 137591879 137600726 - MGP_C57BL6NJ_P0087495 Armcx3 protein_coding protein_coding MGP_C57BL6NJ_T0083308.1 MGP_C57BL6NJ_G0032437.1 mouse_genomes_project 7 29668938 29686242 + MGP_C57BL6NJ_P0083308 Zfp790 protein_coding protein_coding MGP_C57BL6NJ_T0083309.1 MGP_C57BL6NJ_G0032437.1 mouse_genomes_project 7 29668938 29686242 + MGP_C57BL6NJ_P0083309 Zfp790 protein_coding protein_coding MGP_C57BL6NJ_T0005322.1 MGP_C57BL6NJ_G0004529.1 mouse_genomes_project 7 18871487 18889085 + antisense antisense MGP_C57BL6NJ_T0087666.1 MGP_C57BL6NJ_G0033594.1 mouse_genomes_project 7 141131629 141137398 - MGP_C57BL6NJ_P0087666 1700007K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0087667.1 MGP_C57BL6NJ_G0033594.1 mouse_genomes_project 7 141131784 141135186 - MGP_C57BL6NJ_P0087667 1700007K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0082224.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14510139 14529630 + MGP_C57BL6NJ_P0082224 Napa protein_coding protein_coding MGP_C57BL6NJ_T0082225.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14510289 14525190 + Napa protein_coding processed_transcript MGP_C57BL6NJ_T0082226.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14510313 14524789 + Napa protein_coding retained_intron MGP_C57BL6NJ_T0082227.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14510319 14520964 + Napa protein_coding processed_transcript MGP_C57BL6NJ_T0082228.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14520705 14525880 + Napa protein_coding retained_intron MGP_C57BL6NJ_T0082229.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14525298 14528214 + Napa protein_coding retained_intron MGP_C57BL6NJ_T0082230.1 MGP_C57BL6NJ_G0032143.1 mouse_genomes_project 7 14526758 14528394 + Napa protein_coding processed_transcript MGP_C57BL6NJ_T0016231.1 MGP_C57BL6NJ_G0014276.1 mouse_genomes_project 7 42676403 42684383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082612.1 MGP_C57BL6NJ_G0032264.1 mouse_genomes_project 7 23084604 23114790 + MGP_C57BL6NJ_P0082612 Zfp180 protein_coding protein_coding MGP_C57BL6NJ_T0082613.1 MGP_C57BL6NJ_G0032264.1 mouse_genomes_project 7 23084604 23114805 + MGP_C57BL6NJ_P0082613 Zfp180 protein_coding protein_coding MGP_C57BL6NJ_T0082614.1 MGP_C57BL6NJ_G0032264.1 mouse_genomes_project 7 23084634 23114784 + MGP_C57BL6NJ_P0082614 Zfp180 protein_coding protein_coding MGP_C57BL6NJ_T0082615.1 MGP_C57BL6NJ_G0032264.1 mouse_genomes_project 7 23101376 23105637 + Zfp180 protein_coding retained_intron MGP_C57BL6NJ_T0009097.1 MGP_C57BL6NJ_G0007343.1 mouse_genomes_project 7 76488474 76543283 + 1700011C11Rik lincRNA lincRNA MGP_C57BL6NJ_T0100615.1 MGP_C57BL6NJ_G0038661.1 mouse_genomes_project 7 126980077 126980182 + Gm23229 snRNA snRNA MGP_C57BL6NJ_T0100614.1 MGP_C57BL6NJ_G0038660.1 mouse_genomes_project 7 125550280 125550387 - Gm26054 snRNA snRNA MGP_C57BL6NJ_T0088469.1 MGP_C57BL6NJ_G0033790.1 mouse_genomes_project 7 156133150 156141825 + MGP_C57BL6NJ_P0088469 Mrgprf protein_coding protein_coding MGP_C57BL6NJ_T0088470.1 MGP_C57BL6NJ_G0033790.1 mouse_genomes_project 7 156133221 156141617 + MGP_C57BL6NJ_P0088470 Mrgprf protein_coding protein_coding MGP_C57BL6NJ_T0103347.1 MGP_C57BL6NJ_G0041140.1 mouse_genomes_project 7 11530396 11530832 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083789.1 MGP_C57BL6NJ_G0032550.1 mouse_genomes_project 7 36431469 36499601 + MGP_C57BL6NJ_P0083789 Rhpn2 protein_coding protein_coding MGP_C57BL6NJ_T0083790.1 MGP_C57BL6NJ_G0032550.1 mouse_genomes_project 7 36431629 36499597 + MGP_C57BL6NJ_P0083790 Rhpn2 protein_coding protein_coding MGP_C57BL6NJ_T0083791.1 MGP_C57BL6NJ_G0032550.1 mouse_genomes_project 7 36486598 36488939 + Rhpn2 protein_coding retained_intron MGP_C57BL6NJ_T0083792.1 MGP_C57BL6NJ_G0032550.1 mouse_genomes_project 7 36489881 36492522 + Rhpn2 protein_coding retained_intron MGP_C57BL6NJ_T0103418.1 MGP_C57BL6NJ_G0041210.1 mouse_genomes_project 7 34859885 34860862 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084429.1 MGP_C57BL6NJ_G0032727.1 mouse_genomes_project 7 48281978 48290276 + MGP_C57BL6NJ_P0084429 Fam83e protein_coding protein_coding MGP_C57BL6NJ_T0084430.1 MGP_C57BL6NJ_G0032727.1 mouse_genomes_project 7 48281986 48285626 + Fam83e protein_coding retained_intron MGP_C57BL6NJ_T0084432.1 MGP_C57BL6NJ_G0032727.1 mouse_genomes_project 7 48286625 48290273 + Fam83e protein_coding processed_transcript MGP_C57BL6NJ_T0088396.1 MGP_C57BL6NJ_G0033771.1 mouse_genomes_project 7 154314249 154337891 - protein_coding processed_transcript MGP_C57BL6NJ_T0088397.1 MGP_C57BL6NJ_G0033771.1 mouse_genomes_project 7 154316550 154337935 - MGP_C57BL6NJ_P0088397 protein_coding protein_coding MGP_C57BL6NJ_T0100566.1 MGP_C57BL6NJ_G0038612.1 mouse_genomes_project 7 1731999 1732101 + Gm24537 snRNA snRNA MGP_C57BL6NJ_T0082039.1 MGP_C57BL6NJ_G0032066.1 mouse_genomes_project 7 7809840 7839036 - MGP_C57BL6NJ_P0082039 protein_coding protein_coding MGP_C57BL6NJ_T0082283.1 MGP_C57BL6NJ_G0032157.1 mouse_genomes_project 7 14954781 15092777 - MGP_C57BL6NJ_P0082283 Arhgap35 protein_coding protein_coding MGP_C57BL6NJ_T0082284.1 MGP_C57BL6NJ_G0032157.1 mouse_genomes_project 7 14957315 15092721 - MGP_C57BL6NJ_P0082284 Arhgap35 protein_coding protein_coding MGP_C57BL6NJ_T0005409.1 MGP_C57BL6NJ_G0004593.1 mouse_genomes_project 7 89141461 89142850 + 2310044K18Rik antisense antisense MGP_C57BL6NJ_T0002422.1 MGP_C57BL6NJ_G0002311.1 mouse_genomes_project 7 85048440 85051980 - TEC TEC MGP_C57BL6NJ_T0101850.1 MGP_C57BL6NJ_G0039896.1 mouse_genomes_project 7 46643513 46643604 + Gm26247 snoRNA snoRNA MGP_C57BL6NJ_T0084743.1 MGP_C57BL6NJ_G0032813.1 mouse_genomes_project 7 66313304 66315945 - MGP_C57BL6NJ_P0084743 Peg12 protein_coding protein_coding MGP_C57BL6NJ_T0011125.1 MGP_C57BL6NJ_G0009210.1 mouse_genomes_project 7 47625380 47625445 + Mir150 miRNA miRNA MGP_C57BL6NJ_T0016338.1 MGP_C57BL6NJ_G0014383.1 mouse_genomes_project 7 107445767 107446204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103362.1 MGP_C57BL6NJ_G0041155.1 mouse_genomes_project 7 12830976 13869412 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016125.1 MGP_C57BL6NJ_G0014170.1 mouse_genomes_project 7 3111458 3112413 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087813.1 MGP_C57BL6NJ_G0033633.1 mouse_genomes_project 7 147633835 147671645 - 9430038I01Rik protein_coding processed_transcript MGP_C57BL6NJ_T0087814.1 MGP_C57BL6NJ_G0033633.1 mouse_genomes_project 7 147633835 147671651 - MGP_C57BL6NJ_P0087814 9430038I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0087815.1 MGP_C57BL6NJ_G0033633.1 mouse_genomes_project 7 147634398 147671624 - MGP_C57BL6NJ_P0087815 9430038I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0087816.1 MGP_C57BL6NJ_G0033633.1 mouse_genomes_project 7 147641262 147671645 - 9430038I01Rik protein_coding retained_intron MGP_C57BL6NJ_T0087817.1 MGP_C57BL6NJ_G0033633.1 mouse_genomes_project 7 147641294 147671621 - MGP_C57BL6NJ_P0087817 9430038I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0081913.1 MGP_C57BL6NJ_G0032005.1 mouse_genomes_project 7 1788363 1793463 - MGP_C57BL6NJ_P0081913 Tmem238 protein_coding protein_coding MGP_C57BL6NJ_T0081914.1 MGP_C57BL6NJ_G0032005.1 mouse_genomes_project 7 1788978 1792880 - MGP_C57BL6NJ_P0081914 Tmem238 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082999.1 MGP_C57BL6NJ_G0032360.1 mouse_genomes_project 7 26959262 26978751 + MGP_C57BL6NJ_P0082999 Blvrb protein_coding protein_coding MGP_C57BL6NJ_T0083000.1 MGP_C57BL6NJ_G0032360.1 mouse_genomes_project 7 26959284 26971308 + MGP_C57BL6NJ_P0083000 Blvrb protein_coding protein_coding MGP_C57BL6NJ_T0083001.1 MGP_C57BL6NJ_G0032360.1 mouse_genomes_project 7 26959348 26978717 + MGP_C57BL6NJ_P0083001 Blvrb protein_coding protein_coding MGP_C57BL6NJ_T0083002.1 MGP_C57BL6NJ_G0032360.1 mouse_genomes_project 7 26963750 26974341 + Blvrb protein_coding processed_transcript MGP_C57BL6NJ_T0005338.1 MGP_C57BL6NJ_G0004541.1 mouse_genomes_project 7 28924370 28927223 - Gm16282 antisense antisense MGP_C57BL6NJ_T0016109.1 MGP_C57BL6NJ_G0014154.1 mouse_genomes_project 7 189171 190051 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009007.1 MGP_C57BL6NJ_G0007275.1 mouse_genomes_project 7 30624301 30626628 + Gm26610 lincRNA lincRNA MGP_C57BL6NJ_T0086960.1 MGP_C57BL6NJ_G0033468.1 mouse_genomes_project 7 135613690 135636249 + MGP_C57BL6NJ_P0086960 Sbk1 protein_coding protein_coding MGP_C57BL6NJ_T0086961.1 MGP_C57BL6NJ_G0033468.1 mouse_genomes_project 7 135614471 135631164 + MGP_C57BL6NJ_P0086961 Sbk1 protein_coding protein_coding MGP_C57BL6NJ_T0086962.1 MGP_C57BL6NJ_G0033468.1 mouse_genomes_project 7 135632312 135634053 + MGP_C57BL6NJ_P0086962 Sbk1 protein_coding protein_coding MGP_C57BL6NJ_T0087943.1 MGP_C57BL6NJ_G0033667.1 mouse_genomes_project 7 150750832 150751882 + MGP_C57BL6NJ_P0087943 Olfr525 protein_coding protein_coding MGP_C57BL6NJ_T0016112.1 MGP_C57BL6NJ_G0014157.1 mouse_genomes_project 7 957232 957631 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086061.1 MGP_C57BL6NJ_G0033172.1 mouse_genomes_project 7 111217605 111218479 + MGP_C57BL6NJ_P0086061 Olfr635 protein_coding protein_coding MGP_C57BL6NJ_T0087926.1 MGP_C57BL6NJ_G0033659.1 mouse_genomes_project 7 150545513 150554789 + MGP_C57BL6NJ_P0087926 Paox protein_coding protein_coding MGP_C57BL6NJ_T0087927.1 MGP_C57BL6NJ_G0033659.1 mouse_genomes_project 7 150545564 150554789 + MGP_C57BL6NJ_P0087927 Paox protein_coding protein_coding MGP_C57BL6NJ_T0085484.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96388405 96464800 + MGP_C57BL6NJ_P0085484 Sytl2 protein_coding protein_coding MGP_C57BL6NJ_T0085485.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96388405 96464800 + MGP_C57BL6NJ_P0085485 Sytl2 protein_coding protein_coding MGP_C57BL6NJ_T0085486.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96388405 96464800 + MGP_C57BL6NJ_P0085486 Sytl2 protein_coding protein_coding MGP_C57BL6NJ_T0085487.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96388405 96464800 + MGP_C57BL6NJ_P0085487 Sytl2 protein_coding protein_coding MGP_C57BL6NJ_T0085488.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96423631 96464800 + Sytl2 protein_coding processed_transcript MGP_C57BL6NJ_T0085489.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96423653 96464800 + Sytl2 protein_coding processed_transcript MGP_C57BL6NJ_T0085490.1 MGP_C57BL6NJ_G0032988.1 mouse_genomes_project 7 96443173 96464800 + Sytl2 protein_coding processed_transcript MGP_C57BL6NJ_T0082836.1 MGP_C57BL6NJ_G0032319.1 mouse_genomes_project 7 24935048 24936820 + MGP_C57BL6NJ_P0082836 B3gnt8 protein_coding protein_coding MGP_C57BL6NJ_T0082837.1 MGP_C57BL6NJ_G0032319.1 mouse_genomes_project 7 24936031 24943495 + MGP_C57BL6NJ_P0082837 B3gnt8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082838.1 MGP_C57BL6NJ_G0032319.1 mouse_genomes_project 7 24936032 24937887 + MGP_C57BL6NJ_P0082838 B3gnt8 protein_coding protein_coding MGP_C57BL6NJ_T0082839.1 MGP_C57BL6NJ_G0032319.1 mouse_genomes_project 7 24936036 24937880 + B3gnt8 protein_coding retained_intron MGP_C57BL6NJ_T0083664.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31200714 31221619 - Gramd1a protein_coding retained_intron MGP_C57BL6NJ_T0083665.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31200714 31221689 - MGP_C57BL6NJ_P0083665 Gramd1a protein_coding protein_coding MGP_C57BL6NJ_T0083666.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31200714 31221621 - MGP_C57BL6NJ_P0083666 Gramd1a protein_coding protein_coding MGP_C57BL6NJ_T0083667.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31200714 31221619 - MGP_C57BL6NJ_P0083667 Gramd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083668.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31200714 31221640 - MGP_C57BL6NJ_P0083668 Gramd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083669.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31202896 31203902 - Gramd1a protein_coding retained_intron MGP_C57BL6NJ_T0083670.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31203128 31208715 - MGP_C57BL6NJ_P0083670 Gramd1a protein_coding protein_coding MGP_C57BL6NJ_T0083671.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31203376 31214296 - MGP_C57BL6NJ_P0083671 Gramd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083672.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31206128 31210455 - MGP_C57BL6NJ_P0083672 Gramd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083673.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31210404 31221619 - MGP_C57BL6NJ_P0083673 Gramd1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083674.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31211611 31221560 - Gramd1a protein_coding retained_intron MGP_C57BL6NJ_T0083675.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31211719 31222676 - MGP_C57BL6NJ_P0083675 Gramd1a protein_coding protein_coding MGP_C57BL6NJ_T0083676.1 MGP_C57BL6NJ_G0032513.1 mouse_genomes_project 7 31213140 31226551 - MGP_C57BL6NJ_P0083676 Gramd1a protein_coding protein_coding MGP_C57BL6NJ_T0082055.1 MGP_C57BL6NJ_G0032078.1 mouse_genomes_project 7 9743248 9744163 + MGP_C57BL6NJ_P0082055 Vmn1r74 protein_coding protein_coding MGP_C57BL6NJ_T0083263.1 MGP_C57BL6NJ_G0032427.1 mouse_genomes_project 7 29029291 29040134 - MGP_C57BL6NJ_P0083263 Kcnk6 protein_coding protein_coding MGP_C57BL6NJ_T0103360.1 MGP_C57BL6NJ_G0041153.1 mouse_genomes_project 7 12830974 13869411 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086062.1 MGP_C57BL6NJ_G0033173.1 mouse_genomes_project 7 111245531 111387191 - MGP_C57BL6NJ_P0086062 protein_coding protein_coding MGP_C57BL6NJ_T0016172.1 MGP_C57BL6NJ_G0014217.1 mouse_genomes_project 7 24697646 24698598 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016142.1 MGP_C57BL6NJ_G0014187.1 mouse_genomes_project 7 11915851 11916065 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083200.1 MGP_C57BL6NJ_G0032414.1 mouse_genomes_project 7 28617842 28619686 + MGP_C57BL6NJ_P0083200 Lgals7 protein_coding protein_coding MGP_C57BL6NJ_T0083201.1 MGP_C57BL6NJ_G0032414.1 mouse_genomes_project 7 28618218 28620274 + MGP_C57BL6NJ_P0083201 Lgals7 protein_coding protein_coding MGP_C57BL6NJ_T0083202.1 MGP_C57BL6NJ_G0032414.1 mouse_genomes_project 7 28618444 28618978 + Lgals7 protein_coding processed_transcript MGP_C57BL6NJ_T0087246.1 MGP_C57BL6NJ_G0033514.1 mouse_genomes_project 7 136515982 136518610 + MGP_C57BL6NJ_P0087246 AI467606 protein_coding protein_coding MGP_C57BL6NJ_T0087247.1 MGP_C57BL6NJ_G0033514.1 mouse_genomes_project 7 136516047 136517617 + MGP_C57BL6NJ_P0087247 AI467606 protein_coding protein_coding MGP_C57BL6NJ_T0082286.1 MGP_C57BL6NJ_G0032159.1 mouse_genomes_project 7 15204259 15209549 + MGP_C57BL6NJ_P0082286 Ceacam9 protein_coding protein_coding MGP_C57BL6NJ_T0082287.1 MGP_C57BL6NJ_G0032159.1 mouse_genomes_project 7 15204288 15208631 + MGP_C57BL6NJ_P0082287 Ceacam9 protein_coding protein_coding MGP_C57BL6NJ_T0084458.1 MGP_C57BL6NJ_G0032734.1 mouse_genomes_project 7 48418667 48455290 - MGP_C57BL6NJ_P0084458 Grin2d protein_coding protein_coding MGP_C57BL6NJ_T0084459.1 MGP_C57BL6NJ_G0032734.1 mouse_genomes_project 7 48454537 48459595 - MGP_C57BL6NJ_P0084459 Grin2d protein_coding protein_coding MGP_C57BL6NJ_T0002441.1 MGP_C57BL6NJ_G0002330.1 mouse_genomes_project 7 131543220 131545943 + TEC TEC MGP_C57BL6NJ_T0087769.1 MGP_C57BL6NJ_G0033618.1 mouse_genomes_project 7 143719945 143733731 + MGP_C57BL6NJ_P0087769 Bccip protein_coding protein_coding MGP_C57BL6NJ_T0087770.1 MGP_C57BL6NJ_G0033618.1 mouse_genomes_project 7 143719960 143728032 + Bccip protein_coding retained_intron MGP_C57BL6NJ_T0087771.1 MGP_C57BL6NJ_G0033618.1 mouse_genomes_project 7 143720014 143726899 + Bccip protein_coding processed_transcript MGP_C57BL6NJ_T0087772.1 MGP_C57BL6NJ_G0033618.1 mouse_genomes_project 7 143727327 143733527 + Bccip protein_coding processed_transcript MGP_C57BL6NJ_T0087773.1 MGP_C57BL6NJ_G0033618.1 mouse_genomes_project 7 143729964 143731801 + Bccip protein_coding retained_intron MGP_C57BL6NJ_T0009015.1 MGP_C57BL6NJ_G0007282.1 mouse_genomes_project 7 35645897 35646614 - Gm44837 lincRNA lincRNA MGP_C57BL6NJ_T0011963.1 MGP_C57BL6NJ_G0010048.1 mouse_genomes_project 7 153180081 153180152 + Gm27483 misc_RNA misc_RNA MGP_C57BL6NJ_T0082712.1 MGP_C57BL6NJ_G0032291.1 mouse_genomes_project 7 23941544 23954966 + MGP_C57BL6NJ_P0082712 Ceacam10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082713.1 MGP_C57BL6NJ_G0032291.1 mouse_genomes_project 7 23941544 23954965 + MGP_C57BL6NJ_P0082713 Ceacam10 protein_coding protein_coding MGP_C57BL6NJ_T0016337.1 MGP_C57BL6NJ_G0014382.1 mouse_genomes_project 7 107400215 107400568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016395.1 MGP_C57BL6NJ_G0014440.1 mouse_genomes_project 7 153379437 153379990 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011179.1 MGP_C57BL6NJ_G0009264.1 mouse_genomes_project 7 135952851 135952910 - Mir7059 miRNA miRNA MGP_C57BL6NJ_T0011941.1 MGP_C57BL6NJ_G0010026.1 mouse_genomes_project 7 4153399 4153697 - Gm22649 misc_RNA misc_RNA MGP_C57BL6NJ_T0100606.1 MGP_C57BL6NJ_G0038652.1 mouse_genomes_project 7 111654626 111654726 - Gm27995 snRNA snRNA MGP_C57BL6NJ_T0085148.1 MGP_C57BL6NJ_G0032890.1 mouse_genomes_project 7 85449168 85454315 + MGP_C57BL6NJ_P0085148 Ngrn protein_coding protein_coding MGP_C57BL6NJ_T0085149.1 MGP_C57BL6NJ_G0032890.1 mouse_genomes_project 7 85449173 85454315 + Ngrn protein_coding retained_intron MGP_C57BL6NJ_T0083998.1 MGP_C57BL6NJ_G0032605.1 mouse_genomes_project 7 45784726 45798249 + MGP_C57BL6NJ_P0083998 Zfp658 protein_coding protein_coding MGP_C57BL6NJ_T0083999.1 MGP_C57BL6NJ_G0032605.1 mouse_genomes_project 7 45787254 45797754 + MGP_C57BL6NJ_P0083999 Zfp658 protein_coding protein_coding MGP_C57BL6NJ_T0085580.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158028 104184502 - MGP_C57BL6NJ_P0085580 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085581.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158031 104188328 - MGP_C57BL6NJ_P0085581 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085582.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158036 104188337 - MGP_C57BL6NJ_P0085582 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085583.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158037 104188247 - MGP_C57BL6NJ_P0085583 Aamdc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085584.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158044 104188335 - Aamdc protein_coding processed_transcript MGP_C57BL6NJ_T0085585.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158239 104188290 - MGP_C57BL6NJ_P0085585 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085586.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158245 104188291 - MGP_C57BL6NJ_P0085586 Aamdc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085587.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158262 104188323 - MGP_C57BL6NJ_P0085587 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085588.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158367 104188268 - MGP_C57BL6NJ_P0085588 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085589.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104158412 104188231 - MGP_C57BL6NJ_P0085589 Aamdc protein_coding protein_coding MGP_C57BL6NJ_T0085590.1 MGP_C57BL6NJ_G0033010.1 mouse_genomes_project 7 104184748 104187076 - Aamdc protein_coding retained_intron MGP_C57BL6NJ_T0087463.1 MGP_C57BL6NJ_G0033558.1 mouse_genomes_project 7 137463627 137468016 - MGP_C57BL6NJ_P0087463 Prss8 protein_coding protein_coding MGP_C57BL6NJ_T0087464.1 MGP_C57BL6NJ_G0033558.1 mouse_genomes_project 7 137463627 137468016 - MGP_C57BL6NJ_P0087464 Prss8 protein_coding protein_coding MGP_C57BL6NJ_T0087465.1 MGP_C57BL6NJ_G0033558.1 mouse_genomes_project 7 137464673 137468007 - MGP_C57BL6NJ_P0087465 Prss8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086996.1 MGP_C57BL6NJ_G0033474.1 mouse_genomes_project 7 135809109 135826347 - MGP_C57BL6NJ_P0086996 Atp2a1 protein_coding protein_coding MGP_C57BL6NJ_T0086997.1 MGP_C57BL6NJ_G0033474.1 mouse_genomes_project 7 135809111 135810897 - MGP_C57BL6NJ_P0086997 Atp2a1 protein_coding protein_coding MGP_C57BL6NJ_T0086998.1 MGP_C57BL6NJ_G0033474.1 mouse_genomes_project 7 135809833 135827212 - MGP_C57BL6NJ_P0086998 Atp2a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082043.1 MGP_C57BL6NJ_G0032070.1 mouse_genomes_project 7 8174666 8182832 - MGP_C57BL6NJ_P0082043 Zik1 protein_coding protein_coding MGP_C57BL6NJ_T0082538.1 MGP_C57BL6NJ_G0032235.1 mouse_genomes_project 7 18534525 18569919 - MGP_C57BL6NJ_P0082538 Clptm1 protein_coding protein_coding MGP_C57BL6NJ_T0016206.1 MGP_C57BL6NJ_G0014251.1 mouse_genomes_project 7 34219512 34384035 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087665.1 MGP_C57BL6NJ_G0033593.1 mouse_genomes_project 7 141111022 141126279 - MGP_C57BL6NJ_P0087665 Cuzd1 protein_coding protein_coding MGP_C57BL6NJ_T0084371.1 MGP_C57BL6NJ_G0032711.1 mouse_genomes_project 7 48067837 48068691 - Ppp1r15a protein_coding processed_transcript MGP_C57BL6NJ_T0084372.1 MGP_C57BL6NJ_G0032711.1 mouse_genomes_project 7 48067838 48070962 - MGP_C57BL6NJ_P0084372 Ppp1r15a protein_coding protein_coding MGP_C57BL6NJ_T0084373.1 MGP_C57BL6NJ_G0032711.1 mouse_genomes_project 7 48067843 48070840 - Ppp1r15a protein_coding retained_intron MGP_C57BL6NJ_T0018802.1 MGP_C57BL6NJ_G0016053.1 mouse_genomes_project 7 29415271 29420989 - A330087D11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0083796.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36504343 36548375 + MGP_C57BL6NJ_P0083796 Cep89 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083797.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36504363 36548377 + MGP_C57BL6NJ_P0083797 Cep89 protein_coding protein_coding MGP_C57BL6NJ_T0083798.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36504415 36518293 + Cep89 protein_coding retained_intron MGP_C57BL6NJ_T0083799.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36504424 36516947 + Cep89 protein_coding processed_transcript MGP_C57BL6NJ_T0083800.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36504438 36516930 + MGP_C57BL6NJ_P0083800 Cep89 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083801.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36523618 36525559 + Cep89 protein_coding processed_transcript MGP_C57BL6NJ_T0083802.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36523710 36528524 + Cep89 protein_coding retained_intron MGP_C57BL6NJ_T0083803.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36525078 36537904 + MGP_C57BL6NJ_P0083803 Cep89 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083804.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36525579 36537405 + Cep89 protein_coding processed_transcript MGP_C57BL6NJ_T0083805.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36536921 36542264 + Cep89 protein_coding retained_intron MGP_C57BL6NJ_T0083806.1 MGP_C57BL6NJ_G0032552.1 mouse_genomes_project 7 36538011 36548369 + MGP_C57BL6NJ_P0083806 Cep89 protein_coding protein_coding MGP_C57BL6NJ_T0011152.1 MGP_C57BL6NJ_G0009237.1 mouse_genomes_project 7 65850158 65850226 - Mir344f miRNA miRNA MGP_C57BL6NJ_T0085522.1 MGP_C57BL6NJ_G0032996.1 mouse_genomes_project 7 98876003 98905629 - MGP_C57BL6NJ_P0085522 Pcf11 protein_coding protein_coding MGP_C57BL6NJ_T0085523.1 MGP_C57BL6NJ_G0032996.1 mouse_genomes_project 7 98876551 98899244 - MGP_C57BL6NJ_P0085523 Pcf11 protein_coding protein_coding MGP_C57BL6NJ_T0085524.1 MGP_C57BL6NJ_G0032996.1 mouse_genomes_project 7 98879109 98880501 - Pcf11 protein_coding retained_intron MGP_C57BL6NJ_T0085828.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108213846 108247559 + MGP_C57BL6NJ_P0085828 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085829.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108220255 108247070 + MGP_C57BL6NJ_P0085829 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085830.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108220446 108244220 + MGP_C57BL6NJ_P0085830 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085831.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108220671 108247122 + MGP_C57BL6NJ_P0085831 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085832.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108220743 108247241 + MGP_C57BL6NJ_P0085832 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085833.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108220928 108245265 + MGP_C57BL6NJ_P0085833 Stard10 protein_coding protein_coding MGP_C57BL6NJ_T0085834.1 MGP_C57BL6NJ_G0033066.1 mouse_genomes_project 7 108243442 108247070 + MGP_C57BL6NJ_P0085834 Stard10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103522.1 MGP_C57BL6NJ_G0041314.1 mouse_genomes_project 7 95738051 95738264 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081680.1 MGP_C57BL6NJ_G0031963.1 mouse_genomes_project 7 428202 443428 - MGP_C57BL6NJ_P0081680 Tarm1 protein_coding protein_coding MGP_C57BL6NJ_T0081681.1 MGP_C57BL6NJ_G0031963.1 mouse_genomes_project 7 430242 443494 - MGP_C57BL6NJ_P0081681 Tarm1 protein_coding protein_coding MGP_C57BL6NJ_T0081682.1 MGP_C57BL6NJ_G0031963.1 mouse_genomes_project 7 430743 443388 - MGP_C57BL6NJ_P0081682 Tarm1 protein_coding protein_coding MGP_C57BL6NJ_T0082196.1 MGP_C57BL6NJ_G0032132.1 mouse_genomes_project 7 13321915 13583529 - MGP_C57BL6NJ_P0082196 protein_coding protein_coding MGP_C57BL6NJ_T0082197.1 MGP_C57BL6NJ_G0032132.1 mouse_genomes_project 7 13321915 13583344 - MGP_C57BL6NJ_P0082197 protein_coding protein_coding MGP_C57BL6NJ_T0082199.1 MGP_C57BL6NJ_G0032132.1 mouse_genomes_project 7 13322282 13573107 - MGP_C57BL6NJ_P0082199 protein_coding protein_coding MGP_C57BL6NJ_T0082203.1 MGP_C57BL6NJ_G0032132.1 mouse_genomes_project 7 13322431 13582163 - MGP_C57BL6NJ_P0082203 protein_coding protein_coding MGP_C57BL6NJ_T0086450.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119318397 119319180 - Eif4g2 protein_coding processed_transcript MGP_C57BL6NJ_T0086451.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119318620 119320290 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086452.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119318720 119328348 - MGP_C57BL6NJ_P0086452 Eif4g2 protein_coding protein_coding MGP_C57BL6NJ_T0086453.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119319428 119320278 - MGP_C57BL6NJ_P0086453 Eif4g2 protein_coding protein_coding MGP_C57BL6NJ_T0086454.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119320166 119320728 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086455.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119320901 119321414 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086456.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119321240 119322238 - Eif4g2 protein_coding processed_transcript MGP_C57BL6NJ_T0086457.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119322551 119323780 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086458.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119323978 119325393 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086459.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119324450 119329048 - MGP_C57BL6NJ_P0086459 Eif4g2 protein_coding protein_coding MGP_C57BL6NJ_T0086460.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119325366 119328224 - MGP_C57BL6NJ_P0086460 Eif4g2 protein_coding protein_coding MGP_C57BL6NJ_T0086461.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119326447 119328856 - Eif4g2 protein_coding retained_intron MGP_C57BL6NJ_T0086462.1 MGP_C57BL6NJ_G0033358.1 mouse_genomes_project 7 119326945 119327882 - MGP_C57BL6NJ_P0086462 Eif4g2 protein_coding protein_coding MGP_C57BL6NJ_T0084186.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47285574 47301807 + MGP_C57BL6NJ_P0084186 Il4i1 protein_coding protein_coding MGP_C57BL6NJ_T0084187.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47285856 47313065 + MGP_C57BL6NJ_P0084187 Il4i1 protein_coding protein_coding MGP_C57BL6NJ_T0084188.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47285873 47303948 + Il4i1 protein_coding processed_transcript MGP_C57BL6NJ_T0084189.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47308547 47313070 + MGP_C57BL6NJ_P0084189 Il4i1 protein_coding protein_coding MGP_C57BL6NJ_T0084190.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47308551 47310557 + Il4i1 protein_coding retained_intron MGP_C57BL6NJ_T0084191.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47310951 47312042 + Il4i1 protein_coding retained_intron MGP_C57BL6NJ_T0084192.1 MGP_C57BL6NJ_G0032662.1 mouse_genomes_project 7 47311458 47312029 + MGP_C57BL6NJ_P0084192 Il4i1 protein_coding protein_coding MGP_C57BL6NJ_T0009234.1 MGP_C57BL6NJ_G0007430.1 mouse_genomes_project 7 139647204 139664858 + Gm4265 lincRNA lincRNA MGP_C57BL6NJ_T0087475.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512032 137531041 + MGP_C57BL6NJ_P0087475 Fus protein_coding protein_coding MGP_C57BL6NJ_T0087476.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512065 137527373 + MGP_C57BL6NJ_P0087476 Fus protein_coding protein_coding MGP_C57BL6NJ_T0087477.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512066 137519884 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087478.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512066 137517770 + Fus protein_coding processed_transcript MGP_C57BL6NJ_T0087479.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512066 137527370 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087480.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137512083 137527373 + MGP_C57BL6NJ_P0087480 Fus protein_coding protein_coding MGP_C57BL6NJ_T0087481.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137517292 137519884 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087482.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137517431 137522828 + Fus protein_coding processed_transcript MGP_C57BL6NJ_T0087483.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137519699 137523568 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087484.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137520531 137522390 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087485.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137521240 137525577 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087486.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137522870 137526790 + MGP_C57BL6NJ_P0087486 Fus protein_coding protein_coding MGP_C57BL6NJ_T0087487.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137523472 137525527 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087488.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137525524 137527348 + MGP_C57BL6NJ_P0087488 Fus protein_coding protein_coding MGP_C57BL6NJ_T0087489.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137525556 137527170 + Fus protein_coding retained_intron MGP_C57BL6NJ_T0087490.1 MGP_C57BL6NJ_G0033560.1 mouse_genomes_project 7 137528418 137531041 + MGP_C57BL6NJ_P0087490 Fus protein_coding protein_coding MGP_C57BL6NJ_T0016124.1 MGP_C57BL6NJ_G0014169.1 mouse_genomes_project 7 3080794 3080926 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101903.1 MGP_C57BL6NJ_G0039949.1 mouse_genomes_project 7 137029526 137029656 + Snora30 snoRNA snoRNA MGP_C57BL6NJ_T0085694.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106251864 106328006 + MGP_C57BL6NJ_P0085694 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0085695.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106251864 106328006 + MGP_C57BL6NJ_P0085695 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0085696.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106252060 106324809 + MGP_C57BL6NJ_P0085696 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0085697.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106252102 106310176 + MGP_C57BL6NJ_P0085697 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0085698.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106256067 106309371 + MGP_C57BL6NJ_P0085698 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0085699.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106294607 106309363 + Arrb1 protein_coding processed_transcript MGP_C57BL6NJ_T0085700.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106301047 106327901 + MGP_C57BL6NJ_P0085700 Arrb1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085701.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106315827 106322376 + Arrb1 protein_coding retained_intron MGP_C57BL6NJ_T0085702.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106315848 106322390 + Arrb1 protein_coding retained_intron MGP_C57BL6NJ_T0085703.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106315855 106321036 + Arrb1 protein_coding retained_intron MGP_C57BL6NJ_T0085704.1 MGP_C57BL6NJ_G0033035.1 mouse_genomes_project 7 106315857 106321316 + MGP_C57BL6NJ_P0085704 Arrb1 protein_coding protein_coding MGP_C57BL6NJ_T0087880.1 MGP_C57BL6NJ_G0033647.1 mouse_genomes_project 7 150241048 150292821 + MGP_C57BL6NJ_P0087880 Adgra1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087881.1 MGP_C57BL6NJ_G0033647.1 mouse_genomes_project 7 150241061 150292822 + MGP_C57BL6NJ_P0087881 Adgra1 protein_coding protein_coding MGP_C57BL6NJ_T0087882.1 MGP_C57BL6NJ_G0033647.1 mouse_genomes_project 7 150241252 150254432 + Adgra1 protein_coding processed_transcript MGP_C57BL6NJ_T0087883.1 MGP_C57BL6NJ_G0033647.1 mouse_genomes_project 7 150241849 150248092 + Adgra1 protein_coding retained_intron MGP_C57BL6NJ_T0002395.1 MGP_C57BL6NJ_G0002285.1 mouse_genomes_project 7 78162205 78163452 - TEC TEC MGP_C57BL6NJ_T0083058.1 MGP_C57BL6NJ_G0032375.1 mouse_genomes_project 7 27521683 27547279 - MGP_C57BL6NJ_P0083058 protein_coding protein_coding MGP_C57BL6NJ_T0005481.1 MGP_C57BL6NJ_G0004643.1 mouse_genomes_project 7 155132077 155171651 - Gm14372 antisense antisense MGP_C57BL6NJ_T0082652.1 MGP_C57BL6NJ_G0032273.1 mouse_genomes_project 7 23411379 23417190 + MGP_C57BL6NJ_P0082652 Lypd5 protein_coding protein_coding MGP_C57BL6NJ_T0084564.1 MGP_C57BL6NJ_G0032760.1 mouse_genomes_project 7 49681094 49699112 - MGP_C57BL6NJ_P0084564 Spty2d1 protein_coding protein_coding MGP_C57BL6NJ_T0100600.1 MGP_C57BL6NJ_G0038646.1 mouse_genomes_project 7 94007784 94007848 - Gm24249 snRNA snRNA MGP_C57BL6NJ_T0087884.1 MGP_C57BL6NJ_G0033648.1 mouse_genomes_project 7 150312382 150341084 + MGP_C57BL6NJ_P0087884 Kndc1 protein_coding protein_coding MGP_C57BL6NJ_T0087885.1 MGP_C57BL6NJ_G0033648.1 mouse_genomes_project 7 150312382 150358792 + MGP_C57BL6NJ_P0087885 Kndc1 protein_coding protein_coding MGP_C57BL6NJ_T0087886.1 MGP_C57BL6NJ_G0033648.1 mouse_genomes_project 7 150312525 150331760 + MGP_C57BL6NJ_P0087886 Kndc1 protein_coding protein_coding MGP_C57BL6NJ_T0087887.1 MGP_C57BL6NJ_G0033648.1 mouse_genomes_project 7 150340859 150358792 + Kndc1 protein_coding retained_intron MGP_C57BL6NJ_T0084273.1 MGP_C57BL6NJ_G0032689.1 mouse_genomes_project 7 47683802 47688462 - MGP_C57BL6NJ_P0084273 Gfy protein_coding protein_coding MGP_C57BL6NJ_T0086058.1 MGP_C57BL6NJ_G0033169.1 mouse_genomes_project 7 111141742 111142702 + MGP_C57BL6NJ_P0086058 Olfr631 protein_coding protein_coding MGP_C57BL6NJ_T0085304.1 MGP_C57BL6NJ_G0032912.1 mouse_genomes_project 7 86786240 86791137 - Ap3b2 protein_coding retained_intron MGP_C57BL6NJ_T0085305.1 MGP_C57BL6NJ_G0032912.1 mouse_genomes_project 7 86786242 86821787 - MGP_C57BL6NJ_P0085305 Ap3b2 protein_coding protein_coding MGP_C57BL6NJ_T0085306.1 MGP_C57BL6NJ_G0032912.1 mouse_genomes_project 7 86800221 86821568 - Ap3b2 protein_coding retained_intron MGP_C57BL6NJ_T0085307.1 MGP_C57BL6NJ_G0032912.1 mouse_genomes_project 7 86803051 86804339 - Ap3b2 protein_coding processed_transcript MGP_C57BL6NJ_T0085308.1 MGP_C57BL6NJ_G0032912.1 mouse_genomes_project 7 86805574 86821645 - MGP_C57BL6NJ_P0085308 Ap3b2 protein_coding protein_coding MGP_C57BL6NJ_T0083964.1 MGP_C57BL6NJ_G0032596.1 mouse_genomes_project 7 45637753 45643662 + MGP_C57BL6NJ_P0083964 Lim2 protein_coding protein_coding MGP_C57BL6NJ_T0082918.1 MGP_C57BL6NJ_G0032341.1 mouse_genomes_project 7 26480771 26489066 + Cyp2a12 protein_coding retained_intron MGP_C57BL6NJ_T0082919.1 MGP_C57BL6NJ_G0032341.1 mouse_genomes_project 7 26480780 26488523 + MGP_C57BL6NJ_P0082919 Cyp2a12 protein_coding protein_coding MGP_C57BL6NJ_T0082249.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614684 14621739 - Dhx34 protein_coding retained_intron MGP_C57BL6NJ_T0082250.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614684 14639824 - MGP_C57BL6NJ_P0082250 Dhx34 protein_coding protein_coding MGP_C57BL6NJ_T0082251.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614758 14639819 - MGP_C57BL6NJ_P0082251 Dhx34 protein_coding protein_coding MGP_C57BL6NJ_T0082252.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614758 14639780 - MGP_C57BL6NJ_P0082252 Dhx34 protein_coding protein_coding MGP_C57BL6NJ_T0082253.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614758 14639780 - MGP_C57BL6NJ_P0082253 Dhx34 protein_coding protein_coding MGP_C57BL6NJ_T0082254.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14614761 14639780 - MGP_C57BL6NJ_P0082254 Dhx34 protein_coding protein_coding MGP_C57BL6NJ_T0082255.1 MGP_C57BL6NJ_G0032147.1 mouse_genomes_project 7 14623775 14630972 - Dhx34 protein_coding processed_transcript MGP_C57BL6NJ_T0086684.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128354239 128407736 + MGP_C57BL6NJ_P0086684 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086685.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128368832 128403432 + MGP_C57BL6NJ_P0086685 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086686.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128369047 128407736 + MGP_C57BL6NJ_P0086686 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086687.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128369051 128385273 + MGP_C57BL6NJ_P0086687 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086688.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128369125 128388995 + Acsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0086689.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128387738 128403001 + MGP_C57BL6NJ_P0086689 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086690.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128395681 128399384 + MGP_C57BL6NJ_P0086690 Acsm2 protein_coding protein_coding MGP_C57BL6NJ_T0086691.1 MGP_C57BL6NJ_G0033407.1 mouse_genomes_project 7 128397700 128398290 + Acsm2 protein_coding retained_intron MGP_C57BL6NJ_T0016158.1 MGP_C57BL6NJ_G0014203.1 mouse_genomes_project 7 16231453 16231981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103437.1 MGP_C57BL6NJ_G0041229.1 mouse_genomes_project 7 46256644 46262135 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082965.1 MGP_C57BL6NJ_G0032354.1 mouse_genomes_project 7 26740196 26748838 + Numbl protein_coding processed_transcript MGP_C57BL6NJ_T0082966.1 MGP_C57BL6NJ_G0032354.1 mouse_genomes_project 7 26740488 26768850 + MGP_C57BL6NJ_P0082966 Numbl protein_coding protein_coding MGP_C57BL6NJ_T0082967.1 MGP_C57BL6NJ_G0032354.1 mouse_genomes_project 7 26740546 26746864 + Numbl protein_coding processed_transcript MGP_C57BL6NJ_T0082968.1 MGP_C57BL6NJ_G0032354.1 mouse_genomes_project 7 26740638 26768853 + Numbl protein_coding retained_intron MGP_C57BL6NJ_T0082969.1 MGP_C57BL6NJ_G0032354.1 mouse_genomes_project 7 26743210 26768690 + Numbl protein_coding retained_intron MGP_C57BL6NJ_T0082177.1 MGP_C57BL6NJ_G0032123.1 mouse_genomes_project 7 11968241 12221430 - MGP_C57BL6NJ_P0082177 protein_coding protein_coding MGP_C57BL6NJ_T0011180.1 MGP_C57BL6NJ_G0009265.1 mouse_genomes_project 7 136466557 136466647 - Gm44343 miRNA miRNA MGP_C57BL6NJ_T0009001.1 MGP_C57BL6NJ_G0007269.1 mouse_genomes_project 7 24884787 24899639 + lincRNA lincRNA MGP_C57BL6NJ_T0087425.1 MGP_C57BL6NJ_G0033549.1 mouse_genomes_project 7 137328713 137349567 - MGP_C57BL6NJ_P0087425 Stx1b protein_coding protein_coding MGP_C57BL6NJ_T0087426.1 MGP_C57BL6NJ_G0033549.1 mouse_genomes_project 7 137332185 137335738 - MGP_C57BL6NJ_P0087426 Stx1b protein_coding protein_coding MGP_C57BL6NJ_T0005325.1 MGP_C57BL6NJ_G0004532.1 mouse_genomes_project 7 23721516 23728186 - Gm26550 antisense antisense MGP_C57BL6NJ_T0084346.1 MGP_C57BL6NJ_G0032706.1 mouse_genomes_project 7 47990590 47994483 - protein_coding processed_transcript MGP_C57BL6NJ_T0084347.1 MGP_C57BL6NJ_G0032706.1 mouse_genomes_project 7 47990590 47995105 - protein_coding processed_transcript MGP_C57BL6NJ_T0084348.1 MGP_C57BL6NJ_G0032706.1 mouse_genomes_project 7 47990610 47995147 - protein_coding retained_intron MGP_C57BL6NJ_T0082397.1 MGP_C57BL6NJ_G0032195.1 mouse_genomes_project 7 17751346 17791106 + MGP_C57BL6NJ_P0082397 protein_coding protein_coding MGP_C57BL6NJ_T0005362.1 MGP_C57BL6NJ_G0004560.1 mouse_genomes_project 7 36987938 37029496 + E130304I02Rik antisense antisense MGP_C57BL6NJ_T0005363.1 MGP_C57BL6NJ_G0004560.1 mouse_genomes_project 7 36987939 36988374 + E130304I02Rik antisense antisense MGP_C57BL6NJ_T0103407.1 MGP_C57BL6NJ_G0041199.1 mouse_genomes_project 7 34426367 34428160 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009081.1 MGP_C57BL6NJ_G0007332.1 mouse_genomes_project 7 72010104 72029730 - 4833412C05Rik lincRNA lincRNA MGP_C57BL6NJ_T0085903.1 MGP_C57BL6NJ_G0033077.1 mouse_genomes_project 7 108874051 108881744 + MGP_C57BL6NJ_P0085903 Lamtor1 protein_coding protein_coding MGP_C57BL6NJ_T0085904.1 MGP_C57BL6NJ_G0033077.1 mouse_genomes_project 7 108874125 108909808 + MGP_C57BL6NJ_P0085904 Lamtor1 protein_coding protein_coding MGP_C57BL6NJ_T0086059.1 MGP_C57BL6NJ_G0033170.1 mouse_genomes_project 7 111171432 111172386 + MGP_C57BL6NJ_P0086059 Olfr632 protein_coding protein_coding MGP_C57BL6NJ_T0086261.1 MGP_C57BL6NJ_G0033264.1 mouse_genomes_project 7 114598917 114599853 - MGP_C57BL6NJ_P0086261 Olfr698 protein_coding protein_coding MGP_C57BL6NJ_T0005453.1 MGP_C57BL6NJ_G0004621.1 mouse_genomes_project 7 136451081 136454905 + Gm31749 antisense antisense MGP_C57BL6NJ_T0086646.1 MGP_C57BL6NJ_G0033397.1 mouse_genomes_project 7 127468263 127492502 + MGP_C57BL6NJ_P0086646 Ccp110 protein_coding protein_coding MGP_C57BL6NJ_T0086647.1 MGP_C57BL6NJ_G0033397.1 mouse_genomes_project 7 127471085 127492499 + MGP_C57BL6NJ_P0086647 Ccp110 protein_coding protein_coding MGP_C57BL6NJ_T0086648.1 MGP_C57BL6NJ_G0033397.1 mouse_genomes_project 7 127477070 127492494 + Ccp110 protein_coding retained_intron MGP_C57BL6NJ_T0086649.1 MGP_C57BL6NJ_G0033397.1 mouse_genomes_project 7 127481452 127492502 + Ccp110 protein_coding retained_intron MGP_C57BL6NJ_T0086650.1 MGP_C57BL6NJ_G0033397.1 mouse_genomes_project 7 127485738 127487940 + Ccp110 protein_coding retained_intron MGP_C57BL6NJ_T0085919.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109012396 109054928 - MGP_C57BL6NJ_P0085919 Rnf121 protein_coding protein_coding MGP_C57BL6NJ_T0085920.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109012636 109059580 - MGP_C57BL6NJ_P0085920 Rnf121 protein_coding protein_coding MGP_C57BL6NJ_T0085921.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109012697 109016733 - Rnf121 protein_coding retained_intron MGP_C57BL6NJ_T0085922.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109020985 109059569 - MGP_C57BL6NJ_P0085922 Rnf121 protein_coding protein_coding MGP_C57BL6NJ_T0085923.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109027298 109059610 - Rnf121 protein_coding processed_transcript MGP_C57BL6NJ_T0085924.1 MGP_C57BL6NJ_G0033081.1 mouse_genomes_project 7 109032748 109059496 - MGP_C57BL6NJ_P0085924 Rnf121 protein_coding protein_coding MGP_C57BL6NJ_T0005416.1 MGP_C57BL6NJ_G0004596.1 mouse_genomes_project 7 102864875 102867357 - Gm15412 antisense antisense MGP_C57BL6NJ_T0086021.1 MGP_C57BL6NJ_G0033132.1 mouse_genomes_project 7 110288183 110289167 + MGP_C57BL6NJ_P0086021 Olfr593 protein_coding protein_coding MGP_C57BL6NJ_T0101870.1 MGP_C57BL6NJ_G0039916.1 mouse_genomes_project 7 63363013 63363102 - Gm22373 snoRNA snoRNA MGP_C57BL6NJ_T0103316.1 MGP_C57BL6NJ_G0041109.1 mouse_genomes_project 7 1141927 1142764 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085665.1 MGP_C57BL6NJ_G0033025.1 mouse_genomes_project 7 105370239 105385198 + MGP_C57BL6NJ_P0085665 Prkrir protein_coding protein_coding MGP_C57BL6NJ_T0085666.1 MGP_C57BL6NJ_G0033025.1 mouse_genomes_project 7 105370239 105382503 + MGP_C57BL6NJ_P0085666 Prkrir protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085667.1 MGP_C57BL6NJ_G0033025.1 mouse_genomes_project 7 105370464 105382249 + MGP_C57BL6NJ_P0085667 Prkrir protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085668.1 MGP_C57BL6NJ_G0033025.1 mouse_genomes_project 7 105377012 105382393 + Prkrir protein_coding processed_transcript MGP_C57BL6NJ_T0086633.1 MGP_C57BL6NJ_G0033393.1 mouse_genomes_project 7 127249526 127273241 - MGP_C57BL6NJ_P0086633 Coq7 protein_coding protein_coding MGP_C57BL6NJ_T0086634.1 MGP_C57BL6NJ_G0033393.1 mouse_genomes_project 7 127265001 127273296 - MGP_C57BL6NJ_P0086634 Coq7 protein_coding protein_coding MGP_C57BL6NJ_T0086635.1 MGP_C57BL6NJ_G0033393.1 mouse_genomes_project 7 127266743 127273254 - Coq7 protein_coding retained_intron MGP_C57BL6NJ_T0082208.1 MGP_C57BL6NJ_G0032136.1 mouse_genomes_project 7 14243704 14258217 - MGP_C57BL6NJ_P0082208 Crx protein_coding protein_coding MGP_C57BL6NJ_T0082209.1 MGP_C57BL6NJ_G0032136.1 mouse_genomes_project 7 14243705 14250093 - MGP_C57BL6NJ_P0082209 Crx protein_coding protein_coding MGP_C57BL6NJ_T0082210.1 MGP_C57BL6NJ_G0032136.1 mouse_genomes_project 7 14244983 14258121 - Crx protein_coding processed_transcript MGP_C57BL6NJ_T0082211.1 MGP_C57BL6NJ_G0032136.1 mouse_genomes_project 7 14244983 14258093 - MGP_C57BL6NJ_P0082211 Crx protein_coding protein_coding MGP_C57BL6NJ_T0082212.1 MGP_C57BL6NJ_G0032136.1 mouse_genomes_project 7 14245813 14249123 - MGP_C57BL6NJ_P0082212 Crx protein_coding protein_coding MGP_C57BL6NJ_T0002413.1 MGP_C57BL6NJ_G0002302.1 mouse_genomes_project 7 83942112 83943745 - TEC TEC MGP_C57BL6NJ_T0082569.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18706135 18718221 - Cblc protein_coding processed_transcript MGP_C57BL6NJ_T0082570.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18706879 18712699 - Cblc protein_coding processed_transcript MGP_C57BL6NJ_T0082571.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18706972 18728023 - MGP_C57BL6NJ_P0082571 Cblc protein_coding protein_coding MGP_C57BL6NJ_T0082572.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18706972 18728039 - MGP_C57BL6NJ_P0082572 Cblc protein_coding protein_coding MGP_C57BL6NJ_T0082573.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18714616 18723449 - Cblc protein_coding processed_transcript MGP_C57BL6NJ_T0082574.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18719537 18724420 - Cblc protein_coding processed_transcript MGP_C57BL6NJ_T0082575.1 MGP_C57BL6NJ_G0032243.1 mouse_genomes_project 7 18723058 18728035 - Cblc protein_coding retained_intron MGP_C57BL6NJ_T0016228.1 MGP_C57BL6NJ_G0014273.1 mouse_genomes_project 7 41315596 41316128 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088030.1 MGP_C57BL6NJ_G0033705.1 mouse_genomes_project 7 151621031 151640141 - MGP_C57BL6NJ_P0088030 Ano9 protein_coding protein_coding MGP_C57BL6NJ_T0087708.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142649715 142718048 - MGP_C57BL6NJ_P0087708 Fam53b protein_coding protein_coding MGP_C57BL6NJ_T0087709.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142697338 142756288 - MGP_C57BL6NJ_P0087709 Fam53b protein_coding protein_coding MGP_C57BL6NJ_T0087710.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142697338 142725019 - MGP_C57BL6NJ_P0087710 Fam53b protein_coding protein_coding MGP_C57BL6NJ_T0087711.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142698173 142756922 - MGP_C57BL6NJ_P0087711 Fam53b protein_coding protein_coding MGP_C57BL6NJ_T0087712.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142717223 142745465 - MGP_C57BL6NJ_P0087712 Fam53b protein_coding protein_coding MGP_C57BL6NJ_T0087713.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142717334 142718411 - Fam53b protein_coding processed_transcript MGP_C57BL6NJ_T0087714.1 MGP_C57BL6NJ_G0033609.1 mouse_genomes_project 7 142717393 142740835 - Fam53b protein_coding processed_transcript MGP_C57BL6NJ_T0100632.1 MGP_C57BL6NJ_G0038678.1 mouse_genomes_project 7 152643961 152644068 - Gm25416 snRNA snRNA MGP_C57BL6NJ_T0086271.1 MGP_C57BL6NJ_G0033273.1 mouse_genomes_project 7 114780380 114790463 + MGP_C57BL6NJ_P0086271 Olfr1532-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0082036.1 MGP_C57BL6NJ_G0032063.1 mouse_genomes_project 7 4508314 4520545 + MGP_C57BL6NJ_P0082036 Zfp418 protein_coding protein_coding MGP_C57BL6NJ_T0086856.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132059517 132069764 + MGP_C57BL6NJ_P0086856 Rbbp6 protein_coding protein_coding MGP_C57BL6NJ_T0086857.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132064319 132096338 + MGP_C57BL6NJ_P0086857 Rbbp6 protein_coding protein_coding MGP_C57BL6NJ_T0086858.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132064455 132078146 + MGP_C57BL6NJ_P0086858 Rbbp6 protein_coding protein_coding MGP_C57BL6NJ_T0086859.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132064673 132096338 + MGP_C57BL6NJ_P0086859 Rbbp6 protein_coding protein_coding MGP_C57BL6NJ_T0086860.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132069395 132072517 + Rbbp6 protein_coding retained_intron MGP_C57BL6NJ_T0086861.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132069613 132077312 + Rbbp6 protein_coding retained_intron MGP_C57BL6NJ_T0086862.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132076259 132096340 + MGP_C57BL6NJ_P0086862 Rbbp6 protein_coding protein_coding MGP_C57BL6NJ_T0086863.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132076297 132079456 + Rbbp6 protein_coding retained_intron MGP_C57BL6NJ_T0086864.1 MGP_C57BL6NJ_G0033452.1 mouse_genomes_project 7 132083883 132086266 + Rbbp6 protein_coding retained_intron MGP_C57BL6NJ_T0005801.1 MGP_C57BL6NJ_G0004880.1 mouse_genomes_project 7 125002439 125003189 + AV356131 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0085384.1 MGP_C57BL6NJ_G0032937.1 mouse_genomes_project 7 89426684 89594986 - MGP_C57BL6NJ_P0085384 Cemip protein_coding protein_coding MGP_C57BL6NJ_T0085385.1 MGP_C57BL6NJ_G0032937.1 mouse_genomes_project 7 89428616 89438174 - Cemip protein_coding retained_intron MGP_C57BL6NJ_T0085386.1 MGP_C57BL6NJ_G0032937.1 mouse_genomes_project 7 89440362 89595178 - Cemip protein_coding retained_intron MGP_C57BL6NJ_T0085387.1 MGP_C57BL6NJ_G0032937.1 mouse_genomes_project 7 89444298 89475239 - Cemip protein_coding retained_intron MGP_C57BL6NJ_T0085388.1 MGP_C57BL6NJ_G0032937.1 mouse_genomes_project 7 89454572 89595178 - Cemip protein_coding retained_intron MGP_C57BL6NJ_T0002430.1 MGP_C57BL6NJ_G0002319.1 mouse_genomes_project 7 107266915 107267845 + TEC TEC MGP_C57BL6NJ_T0085478.1 MGP_C57BL6NJ_G0032985.1 mouse_genomes_project 7 95976321 95977421 + MGP_C57BL6NJ_P0085478 protein_coding protein_coding MGP_C57BL6NJ_T0086004.1 MGP_C57BL6NJ_G0033117.1 mouse_genomes_project 7 109961079 109962048 - MGP_C57BL6NJ_P0086004 Olfr571 protein_coding protein_coding MGP_C57BL6NJ_T0018884.1 MGP_C57BL6NJ_G0016084.1 mouse_genomes_project 7 136298432 136304047 + Gm20650 processed_transcript processed_transcript MGP_C57BL6NJ_T0016159.1 MGP_C57BL6NJ_G0014204.1 mouse_genomes_project 7 16299934 16300401 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016175.1 MGP_C57BL6NJ_G0014220.1 mouse_genomes_project 7 25121208 25121824 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102569.1 MGP_C57BL6NJ_G0040401.1 mouse_genomes_project 7 46193423 46197916 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102570.1 MGP_C57BL6NJ_G0040401.1 mouse_genomes_project 7 46195226 46199043 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0083049.1 MGP_C57BL6NJ_G0032371.1 mouse_genomes_project 7 27310727 27333209 + MGP_C57BL6NJ_P0083049 Zfp60 protein_coding protein_coding MGP_C57BL6NJ_T0083050.1 MGP_C57BL6NJ_G0032371.1 mouse_genomes_project 7 27310749 27321697 + Zfp60 protein_coding retained_intron MGP_C57BL6NJ_T0083051.1 MGP_C57BL6NJ_G0032371.1 mouse_genomes_project 7 27310849 27329869 + MGP_C57BL6NJ_P0083051 Zfp60 protein_coding protein_coding MGP_C57BL6NJ_T0083052.1 MGP_C57BL6NJ_G0032371.1 mouse_genomes_project 7 27317775 27329431 + MGP_C57BL6NJ_P0083052 Zfp60 protein_coding protein_coding MGP_C57BL6NJ_T0082609.1 MGP_C57BL6NJ_G0032261.1 mouse_genomes_project 7 22981107 22982091 + MGP_C57BL6NJ_P0082609 Vmn1r181 protein_coding protein_coding MGP_C57BL6NJ_T0081880.1 MGP_C57BL6NJ_G0031998.1 mouse_genomes_project 7 1672586 1705691 + MGP_C57BL6NJ_P0081880 Brsk1 protein_coding protein_coding MGP_C57BL6NJ_T0081881.1 MGP_C57BL6NJ_G0031998.1 mouse_genomes_project 7 1672867 1705707 + MGP_C57BL6NJ_P0081881 Brsk1 protein_coding protein_coding MGP_C57BL6NJ_T0081882.1 MGP_C57BL6NJ_G0031998.1 mouse_genomes_project 7 1673019 1691414 + MGP_C57BL6NJ_P0081882 Brsk1 protein_coding protein_coding MGP_C57BL6NJ_T0081883.1 MGP_C57BL6NJ_G0031998.1 mouse_genomes_project 7 1674178 1691414 + MGP_C57BL6NJ_P0081883 Brsk1 protein_coding protein_coding MGP_C57BL6NJ_T0081885.1 MGP_C57BL6NJ_G0031998.1 mouse_genomes_project 7 1694965 1696982 + MGP_C57BL6NJ_P0081885 Brsk1 protein_coding protein_coding MGP_C57BL6NJ_T0084753.1 MGP_C57BL6NJ_G0032817.1 mouse_genomes_project 7 67816188 67819866 + MGP_C57BL6NJ_P0084753 E030018B13Rik protein_coding protein_coding MGP_C57BL6NJ_T0082072.1 MGP_C57BL6NJ_G0032089.1 mouse_genomes_project 7 10477216 10505518 + MGP_C57BL6NJ_P0082072 2900092C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0086324.1 MGP_C57BL6NJ_G0033319.1 mouse_genomes_project 7 116685396 116686329 + MGP_C57BL6NJ_P0086324 Olfr508 protein_coding protein_coding MGP_C57BL6NJ_T0083687.1 MGP_C57BL6NJ_G0032522.1 mouse_genomes_project 7 34285258 34287235 - MGP_C57BL6NJ_P0083687 protein_coding protein_coding MGP_C57BL6NJ_T0086137.1 MGP_C57BL6NJ_G0033226.1 mouse_genomes_project 7 112592382 112593324 + MGP_C57BL6NJ_P0086137 Olfr678 protein_coding protein_coding MGP_C57BL6NJ_T0081996.1 MGP_C57BL6NJ_G0032043.1 mouse_genomes_project 7 3556680 3577823 + MGP_C57BL6NJ_P0081996 Zfp667 protein_coding protein_coding MGP_C57BL6NJ_T0081997.1 MGP_C57BL6NJ_G0032043.1 mouse_genomes_project 7 3556694 3570899 + Zfp667 protein_coding processed_transcript MGP_C57BL6NJ_T0081998.1 MGP_C57BL6NJ_G0032043.1 mouse_genomes_project 7 3556715 3577802 + MGP_C57BL6NJ_P0081998 Zfp667 protein_coding protein_coding MGP_C57BL6NJ_T0081999.1 MGP_C57BL6NJ_G0032043.1 mouse_genomes_project 7 3557969 3577622 + MGP_C57BL6NJ_P0081999 Zfp667 protein_coding protein_coding MGP_C57BL6NJ_T0082000.1 MGP_C57BL6NJ_G0032043.1 mouse_genomes_project 7 3560608 3564665 + Zfp667 protein_coding retained_intron MGP_C57BL6NJ_T0085181.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85518355 85534055 - MGP_C57BL6NJ_P0085181 Unc45a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085182.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85518362 85534941 - MGP_C57BL6NJ_P0085182 Unc45a protein_coding protein_coding MGP_C57BL6NJ_T0085183.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85518365 85534155 - MGP_C57BL6NJ_P0085183 Unc45a protein_coding protein_coding MGP_C57BL6NJ_T0085184.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85518366 85534107 - MGP_C57BL6NJ_P0085184 Unc45a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085185.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85518396 85532630 - MGP_C57BL6NJ_P0085185 Unc45a protein_coding protein_coding MGP_C57BL6NJ_T0085186.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85527249 85534142 - MGP_C57BL6NJ_P0085186 Unc45a protein_coding protein_coding MGP_C57BL6NJ_T0085187.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85531338 85534137 - Unc45a protein_coding retained_intron MGP_C57BL6NJ_T0085188.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85531888 85534084 - Unc45a protein_coding retained_intron MGP_C57BL6NJ_T0085189.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85532176 85534153 - MGP_C57BL6NJ_P0085189 Unc45a protein_coding protein_coding MGP_C57BL6NJ_T0085190.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85532180 85534155 - Unc45a protein_coding processed_transcript MGP_C57BL6NJ_T0085191.1 MGP_C57BL6NJ_G0032894.1 mouse_genomes_project 7 85532571 85534147 - Unc45a protein_coding retained_intron MGP_C57BL6NJ_T0008992.1 MGP_C57BL6NJ_G0007262.1 mouse_genomes_project 7 18494407 18499408 - Gm26890 lincRNA lincRNA MGP_C57BL6NJ_T0011108.1 MGP_C57BL6NJ_G0009193.1 mouse_genomes_project 7 28820879 28820945 + Gm44408 miRNA miRNA MGP_C57BL6NJ_T0083053.1 MGP_C57BL6NJ_G0032372.1 mouse_genomes_project 7 27394526 27412496 + MGP_C57BL6NJ_P0083053 Zfp626 protein_coding protein_coding MGP_C57BL6NJ_T0005302.1 MGP_C57BL6NJ_G0004517.1 mouse_genomes_project 7 1393055 1417572 - Gm15494 antisense antisense MGP_C57BL6NJ_T0005303.1 MGP_C57BL6NJ_G0004517.1 mouse_genomes_project 7 1395266 1417608 - Gm15494 antisense antisense MGP_C57BL6NJ_T0086246.1 MGP_C57BL6NJ_G0033256.1 mouse_genomes_project 7 113385870 113421981 - MGP_C57BL6NJ_P0086246 Dchs1 protein_coding protein_coding MGP_C57BL6NJ_T0086247.1 MGP_C57BL6NJ_G0033256.1 mouse_genomes_project 7 113385871 113422085 - MGP_C57BL6NJ_P0086247 Dchs1 protein_coding protein_coding MGP_C57BL6NJ_T0086248.1 MGP_C57BL6NJ_G0033256.1 mouse_genomes_project 7 113389857 113390771 - Dchs1 protein_coding retained_intron MGP_C57BL6NJ_T0086249.1 MGP_C57BL6NJ_G0033256.1 mouse_genomes_project 7 113398079 113421983 - MGP_C57BL6NJ_P0086249 Dchs1 protein_coding protein_coding MGP_C57BL6NJ_T0086119.1 MGP_C57BL6NJ_G0033210.1 mouse_genomes_project 7 112091041 112092005 + MGP_C57BL6NJ_P0086119 Olfr661 protein_coding protein_coding MGP_C57BL6NJ_T0101878.1 MGP_C57BL6NJ_G0039924.1 mouse_genomes_project 7 88433766 88433898 + Gm22934 snoRNA snoRNA MGP_C57BL6NJ_T0016225.1 MGP_C57BL6NJ_G0014270.1 mouse_genomes_project 7 37452541 37453516 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002446.1 MGP_C57BL6NJ_G0002335.1 mouse_genomes_project 7 134602982 134604142 + TEC TEC MGP_C57BL6NJ_T0016393.1 MGP_C57BL6NJ_G0014438.1 mouse_genomes_project 7 151251525 151252012 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009211.1 MGP_C57BL6NJ_G0007416.1 mouse_genomes_project 7 136193525 136201895 - lincRNA lincRNA MGP_C57BL6NJ_T0009099.1 MGP_C57BL6NJ_G0007345.1 mouse_genomes_project 7 77274462 77274802 - Gm28744 lincRNA lincRNA MGP_C57BL6NJ_T0082616.1 MGP_C57BL6NJ_G0032265.1 mouse_genomes_project 7 23121463 23138230 + MGP_C57BL6NJ_P0082616 Zfp112 protein_coding protein_coding MGP_C57BL6NJ_T0082617.1 MGP_C57BL6NJ_G0032265.1 mouse_genomes_project 7 23121559 23123666 + Zfp112 protein_coding retained_intron MGP_C57BL6NJ_T0016200.1 MGP_C57BL6NJ_G0014245.1 mouse_genomes_project 7 32182515 32183522 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083559.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30817602 30824521 - MGP_C57BL6NJ_P0083559 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0083560.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30817611 30820390 - MGP_C57BL6NJ_P0083560 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0083561.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30818366 30822394 - MGP_C57BL6NJ_P0083561 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0083562.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30818818 30820389 - MGP_C57BL6NJ_P0083562 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0083563.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30818936 30820228 - MGP_C57BL6NJ_P0083563 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0083564.1 MGP_C57BL6NJ_G0032496.1 mouse_genomes_project 7 30818963 30820398 - MGP_C57BL6NJ_P0083564 Ffar2 protein_coding protein_coding MGP_C57BL6NJ_T0002445.1 MGP_C57BL6NJ_G0002334.1 mouse_genomes_project 7 134326392 134328855 - TEC TEC MGP_C57BL6NJ_T0083912.1 MGP_C57BL6NJ_G0032576.1 mouse_genomes_project 7 43429053 43439644 + MGP_C57BL6NJ_P0083912 protein_coding protein_coding MGP_C57BL6NJ_T0083913.1 MGP_C57BL6NJ_G0032576.1 mouse_genomes_project 7 43438123 43484346 + MGP_C57BL6NJ_P0083913 protein_coding protein_coding MGP_C57BL6NJ_T0083914.1 MGP_C57BL6NJ_G0032576.1 mouse_genomes_project 7 43438431 43439667 + protein_coding retained_intron MGP_C57BL6NJ_T0083915.1 MGP_C57BL6NJ_G0032576.1 mouse_genomes_project 7 43457526 43458478 + protein_coding retained_intron MGP_C57BL6NJ_T0087529.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855040 137856101 + Slc5a2 protein_coding retained_intron MGP_C57BL6NJ_T0087530.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855059 137863006 + MGP_C57BL6NJ_P0087530 Slc5a2 protein_coding protein_coding MGP_C57BL6NJ_T0087531.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855061 137862796 + MGP_C57BL6NJ_P0087531 Slc5a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087532.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855066 137858523 + MGP_C57BL6NJ_P0087532 Slc5a2 protein_coding protein_coding MGP_C57BL6NJ_T0087533.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855078 137858527 + MGP_C57BL6NJ_P0087533 Slc5a2 protein_coding protein_coding MGP_C57BL6NJ_T0087534.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855080 137861280 + MGP_C57BL6NJ_P0087534 Slc5a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087535.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855683 137860640 + MGP_C57BL6NJ_P0087535 Slc5a2 protein_coding protein_coding MGP_C57BL6NJ_T0087536.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855726 137856862 + MGP_C57BL6NJ_P0087536 Slc5a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087537.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137855753 137856158 + Slc5a2 protein_coding retained_intron MGP_C57BL6NJ_T0087538.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137856341 137858376 + Slc5a2 protein_coding retained_intron MGP_C57BL6NJ_T0087539.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137856774 137860563 + MGP_C57BL6NJ_P0087539 Slc5a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087540.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137858336 137862763 + MGP_C57BL6NJ_P0087540 Slc5a2 protein_coding protein_coding MGP_C57BL6NJ_T0087541.1 MGP_C57BL6NJ_G0033573.1 mouse_genomes_project 7 137861149 137862763 + MGP_C57BL6NJ_P0087541 Slc5a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086013.1 MGP_C57BL6NJ_G0033125.1 mouse_genomes_project 7 110112800 110113760 + MGP_C57BL6NJ_P0086013 Olfr582 protein_coding protein_coding MGP_C57BL6NJ_T0102315.1 MGP_C57BL6NJ_G0040279.1 mouse_genomes_project 7 72885814 72887368 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102316.1 MGP_C57BL6NJ_G0040279.1 mouse_genomes_project 7 72886196 72886916 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0084976.1 MGP_C57BL6NJ_G0032857.1 mouse_genomes_project 7 80270583 80570212 + MGP_C57BL6NJ_P0084976 Akap13 protein_coding protein_coding MGP_C57BL6NJ_T0084977.1 MGP_C57BL6NJ_G0032857.1 mouse_genomes_project 7 80352810 80570217 + MGP_C57BL6NJ_P0084977 Akap13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0103478.1 MGP_C57BL6NJ_G0041270.1 mouse_genomes_project 7 50961371 50962320 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084307.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853322 47884516 - MGP_C57BL6NJ_P0084307 Ppfia3 protein_coding protein_coding MGP_C57BL6NJ_T0084308.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853323 47854968 - Ppfia3 protein_coding processed_transcript MGP_C57BL6NJ_T0084309.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853323 47884821 - MGP_C57BL6NJ_P0084309 Ppfia3 protein_coding protein_coding MGP_C57BL6NJ_T0084310.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853469 47884821 - Ppfia3 protein_coding retained_intron MGP_C57BL6NJ_T0084311.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853471 47877915 - MGP_C57BL6NJ_P0084311 Ppfia3 protein_coding protein_coding MGP_C57BL6NJ_T0084312.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47853477 47854959 - Ppfia3 protein_coding processed_transcript MGP_C57BL6NJ_T0084313.1 MGP_C57BL6NJ_G0032698.1 mouse_genomes_project 7 47854018 47855357 - Ppfia3 protein_coding retained_intron MGP_C57BL6NJ_T0086056.1 MGP_C57BL6NJ_G0033167.1 mouse_genomes_project 7 111105684 111106608 - MGP_C57BL6NJ_P0086056 Olfr64 protein_coding protein_coding MGP_C57BL6NJ_T0011951.1 MGP_C57BL6NJ_G0010036.1 mouse_genomes_project 7 79751333 79751684 - Gm22326 misc_RNA misc_RNA MGP_C57BL6NJ_T0086735.1 MGP_C57BL6NJ_G0033420.1 mouse_genomes_project 7 129039266 129054932 - MGP_C57BL6NJ_P0086735 Crym protein_coding protein_coding MGP_C57BL6NJ_T0086736.1 MGP_C57BL6NJ_G0033420.1 mouse_genomes_project 7 129050015 129054932 - Crym protein_coding retained_intron MGP_C57BL6NJ_T0002449.1 MGP_C57BL6NJ_G0002338.1 mouse_genomes_project 7 136354280 136356035 + TEC TEC MGP_C57BL6NJ_T0086031.1 MGP_C57BL6NJ_G0033142.1 mouse_genomes_project 7 110588590 110589505 - MGP_C57BL6NJ_P0086031 protein_coding protein_coding MGP_C57BL6NJ_T0101860.1 MGP_C57BL6NJ_G0039906.1 mouse_genomes_project 7 61516106 61516240 + Gm23911 snoRNA snoRNA MGP_C57BL6NJ_T0084501.1 MGP_C57BL6NJ_G0032747.1 mouse_genomes_project 7 49042102 49078965 + MGP_C57BL6NJ_P0084501 Kcnc1 protein_coding protein_coding MGP_C57BL6NJ_T0084502.1 MGP_C57BL6NJ_G0032747.1 mouse_genomes_project 7 49043253 49084029 + MGP_C57BL6NJ_P0084502 Kcnc1 protein_coding protein_coding MGP_C57BL6NJ_T0084503.1 MGP_C57BL6NJ_G0032747.1 mouse_genomes_project 7 49068277 49073382 + Kcnc1 protein_coding processed_transcript MGP_C57BL6NJ_T0086403.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118502020 118834845 - MGP_C57BL6NJ_P0086403 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086404.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118502029 118834843 - MGP_C57BL6NJ_P0086404 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086405.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118503405 118834684 - MGP_C57BL6NJ_P0086405 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086406.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118514718 118534209 - Sbf2 protein_coding retained_intron MGP_C57BL6NJ_T0086407.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118523910 118556539 - MGP_C57BL6NJ_P0086407 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086408.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118533107 118547302 - Sbf2 protein_coding retained_intron MGP_C57BL6NJ_T0086409.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118535250 118558960 - MGP_C57BL6NJ_P0086409 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086410.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118571624 118834837 - Sbf2 protein_coding retained_intron MGP_C57BL6NJ_T0086411.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118571935 118834819 - Sbf2 protein_coding retained_intron MGP_C57BL6NJ_T0086412.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118625758 118647002 - MGP_C57BL6NJ_P0086412 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086413.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118630178 118834805 - Sbf2 protein_coding retained_intron MGP_C57BL6NJ_T0086414.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118645995 118834828 - MGP_C57BL6NJ_P0086414 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086415.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118646182 118667077 - MGP_C57BL6NJ_P0086415 Sbf2 protein_coding protein_coding MGP_C57BL6NJ_T0086416.1 MGP_C57BL6NJ_G0033351.1 mouse_genomes_project 7 118667020 118834684 - MGP_C57BL6NJ_P0086416 Sbf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086914.1 MGP_C57BL6NJ_G0033462.1 mouse_genomes_project 7 134844961 134872322 + MGP_C57BL6NJ_P0086914 Il4ra protein_coding protein_coding MGP_C57BL6NJ_T0086915.1 MGP_C57BL6NJ_G0033462.1 mouse_genomes_project 7 134845112 134865128 + Il4ra protein_coding retained_intron MGP_C57BL6NJ_T0086916.1 MGP_C57BL6NJ_G0033462.1 mouse_genomes_project 7 134845112 134860059 + MGP_C57BL6NJ_P0086916 Il4ra protein_coding protein_coding MGP_C57BL6NJ_T0086917.1 MGP_C57BL6NJ_G0033462.1 mouse_genomes_project 7 134845117 134862845 + MGP_C57BL6NJ_P0086917 Il4ra protein_coding protein_coding MGP_C57BL6NJ_T0086918.1 MGP_C57BL6NJ_G0033462.1 mouse_genomes_project 7 134845128 134870815 + MGP_C57BL6NJ_P0086918 Il4ra protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082171.1 MGP_C57BL6NJ_G0032118.1 mouse_genomes_project 7 11553460 11575653 - MGP_C57BL6NJ_P0082171 Bsph2 protein_coding protein_coding MGP_C57BL6NJ_T0082172.1 MGP_C57BL6NJ_G0032118.1 mouse_genomes_project 7 11553462 11575653 - MGP_C57BL6NJ_P0082172 Bsph2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087171.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136268821 136272227 + MGP_C57BL6NJ_P0087171 Hirip3 protein_coding protein_coding MGP_C57BL6NJ_T0087172.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136269288 136270254 + Hirip3 protein_coding retained_intron MGP_C57BL6NJ_T0087173.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136269313 136270575 + Hirip3 protein_coding retained_intron MGP_C57BL6NJ_T0087174.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136269316 136271021 + Hirip3 protein_coding processed_transcript MGP_C57BL6NJ_T0087175.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136269330 136270281 + MGP_C57BL6NJ_P0087175 Hirip3 protein_coding protein_coding MGP_C57BL6NJ_T0087176.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136270692 136271378 + Hirip3 protein_coding retained_intron MGP_C57BL6NJ_T0087177.1 MGP_C57BL6NJ_G0033499.1 mouse_genomes_project 7 136271265 136271768 + Hirip3 protein_coding retained_intron MGP_C57BL6NJ_T0016275.1 MGP_C57BL6NJ_G0014320.1 mouse_genomes_project 7 59603689 59604581 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087402.1 MGP_C57BL6NJ_G0033545.1 mouse_genomes_project 7 137293228 137298564 + MGP_C57BL6NJ_P0087402 Orai3 protein_coding protein_coding MGP_C57BL6NJ_T0087403.1 MGP_C57BL6NJ_G0033545.1 mouse_genomes_project 7 137293228 137298564 + MGP_C57BL6NJ_P0087403 Orai3 protein_coding protein_coding MGP_C57BL6NJ_T0087404.1 MGP_C57BL6NJ_G0033545.1 mouse_genomes_project 7 137293228 137298106 + MGP_C57BL6NJ_P0087404 Orai3 protein_coding protein_coding MGP_C57BL6NJ_T0084022.1 MGP_C57BL6NJ_G0032615.1 mouse_genomes_project 7 46030685 46035061 + MGP_C57BL6NJ_P0084022 Klk10 protein_coding protein_coding MGP_C57BL6NJ_T0018784.1 MGP_C57BL6NJ_G0016044.1 mouse_genomes_project 7 528559 541082 - Gm15927 processed_transcript antisense MGP_C57BL6NJ_T0018785.1 MGP_C57BL6NJ_G0016044.1 mouse_genomes_project 7 538751 539696 - Gm15927 processed_transcript antisense MGP_C57BL6NJ_T0018786.1 MGP_C57BL6NJ_G0016044.1 mouse_genomes_project 7 538752 541050 - Gm15927 processed_transcript retained_intron MGP_C57BL6NJ_T0018787.1 MGP_C57BL6NJ_G0016044.1 mouse_genomes_project 7 540543 541023 - Gm15927 processed_transcript processed_transcript MGP_C57BL6NJ_T0018788.1 MGP_C57BL6NJ_G0016044.1 mouse_genomes_project 7 540759 541333 - Gm15927 processed_transcript processed_transcript MGP_C57BL6NJ_T0086115.1 MGP_C57BL6NJ_G0033206.1 mouse_genomes_project 7 112025788 112026749 + MGP_C57BL6NJ_P0086115 protein_coding protein_coding MGP_C57BL6NJ_T0103376.1 MGP_C57BL6NJ_G0041169.1 mouse_genomes_project 7 14197402 14205668 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016353.1 MGP_C57BL6NJ_G0014398.1 mouse_genomes_project 7 118733883 118736981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086259.1 MGP_C57BL6NJ_G0033262.1 mouse_genomes_project 7 114553929 114556543 - MGP_C57BL6NJ_P0086259 protein_coding protein_coding MGP_C57BL6NJ_T0002408.1 MGP_C57BL6NJ_G0002297.1 mouse_genomes_project 7 81529039 81529990 + TEC TEC MGP_C57BL6NJ_T0082325.1 MGP_C57BL6NJ_G0032165.1 mouse_genomes_project 7 15359747 15371940 + MGP_C57BL6NJ_P0082325 Dact3 protein_coding protein_coding MGP_C57BL6NJ_T0005433.1 MGP_C57BL6NJ_G0004608.1 mouse_genomes_project 7 121902253 121927925 - Far1os antisense antisense MGP_C57BL6NJ_T0005434.1 MGP_C57BL6NJ_G0004608.1 mouse_genomes_project 7 121909559 121936539 - Far1os antisense antisense MGP_C57BL6NJ_T0083822.1 MGP_C57BL6NJ_G0032556.1 mouse_genomes_project 7 36737153 36743743 - MGP_C57BL6NJ_P0083822 Rgs9bp protein_coding protein_coding MGP_C57BL6NJ_T0103422.1 MGP_C57BL6NJ_G0041214.1 mouse_genomes_project 7 39667061 39670873 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099512.1 MGP_C57BL6NJ_G0037565.1 mouse_genomes_project 7 83541867 83556719 - Gm44606 sense_intronic sense_intronic MGP_C57BL6NJ_T0085719.1 MGP_C57BL6NJ_G0033044.1 mouse_genomes_project 7 106770524 106798820 + MGP_C57BL6NJ_P0085719 Chrdl2 protein_coding protein_coding MGP_C57BL6NJ_T0085720.1 MGP_C57BL6NJ_G0033044.1 mouse_genomes_project 7 106774034 106798822 + MGP_C57BL6NJ_P0085720 Chrdl2 protein_coding protein_coding MGP_C57BL6NJ_T0085721.1 MGP_C57BL6NJ_G0033044.1 mouse_genomes_project 7 106786195 106798820 + MGP_C57BL6NJ_P0085721 Chrdl2 protein_coding protein_coding MGP_C57BL6NJ_T0005334.1 MGP_C57BL6NJ_G0004537.1 mouse_genomes_project 7 26577568 26591770 - antisense antisense MGP_C57BL6NJ_T0005382.1 MGP_C57BL6NJ_G0004572.1 mouse_genomes_project 7 59629513 59630478 - Gm44506 antisense antisense MGP_C57BL6NJ_T0086331.1 MGP_C57BL6NJ_G0033326.1 mouse_genomes_project 7 116949081 116950136 - MGP_C57BL6NJ_P0086331 Olfr517 protein_coding protein_coding MGP_C57BL6NJ_T0100567.1 MGP_C57BL6NJ_G0038613.1 mouse_genomes_project 7 2307428 2307535 - Gm23942 snRNA snRNA MGP_C57BL6NJ_T0086606.1 MGP_C57BL6NJ_G0033387.1 mouse_genomes_project 7 126015888 126292151 + Xylt1 protein_coding retained_intron MGP_C57BL6NJ_T0086607.1 MGP_C57BL6NJ_G0033387.1 mouse_genomes_project 7 126015888 126329812 + MGP_C57BL6NJ_P0086607 Xylt1 protein_coding protein_coding MGP_C57BL6NJ_T0086608.1 MGP_C57BL6NJ_G0033387.1 mouse_genomes_project 7 126126819 126200932 + Xylt1 protein_coding retained_intron MGP_C57BL6NJ_T0085982.1 MGP_C57BL6NJ_G0033097.1 mouse_genomes_project 7 109584939 109585890 + MGP_C57BL6NJ_P0085982 Olfr549 protein_coding protein_coding MGP_C57BL6NJ_T0085513.1 MGP_C57BL6NJ_G0032994.1 mouse_genomes_project 7 98779146 98782718 + Ccdc90b protein_coding processed_transcript MGP_C57BL6NJ_T0085514.1 MGP_C57BL6NJ_G0032994.1 mouse_genomes_project 7 98779146 98799869 + MGP_C57BL6NJ_P0085514 Ccdc90b protein_coding protein_coding MGP_C57BL6NJ_T0085515.1 MGP_C57BL6NJ_G0032994.1 mouse_genomes_project 7 98779146 98799869 + MGP_C57BL6NJ_P0085515 Ccdc90b protein_coding protein_coding MGP_C57BL6NJ_T0083084.1 MGP_C57BL6NJ_G0032384.1 mouse_genomes_project 7 27907776 27909168 + MGP_C57BL6NJ_P0083084 Eid2 protein_coding protein_coding MGP_C57BL6NJ_T0102562.1 MGP_C57BL6NJ_G0040398.1 mouse_genomes_project 7 40998478 41031310 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102563.1 MGP_C57BL6NJ_G0040398.1 mouse_genomes_project 7 41008728 41028729 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0103514.1 MGP_C57BL6NJ_G0041306.1 mouse_genomes_project 7 91844024 91854657 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087459.1 MGP_C57BL6NJ_G0033557.1 mouse_genomes_project 7 137450430 137454005 + Kat8 protein_coding retained_intron MGP_C57BL6NJ_T0087460.1 MGP_C57BL6NJ_G0033557.1 mouse_genomes_project 7 137450430 137463749 + MGP_C57BL6NJ_P0087460 Kat8 protein_coding protein_coding MGP_C57BL6NJ_T0087461.1 MGP_C57BL6NJ_G0033557.1 mouse_genomes_project 7 137452069 137458423 + MGP_C57BL6NJ_P0087461 Kat8 protein_coding protein_coding MGP_C57BL6NJ_T0087462.1 MGP_C57BL6NJ_G0033557.1 mouse_genomes_project 7 137457699 137458491 + Kat8 protein_coding retained_intron MGP_C57BL6NJ_T0005349.1 MGP_C57BL6NJ_G0004550.1 mouse_genomes_project 7 30985702 31019547 + antisense antisense MGP_C57BL6NJ_T0016173.1 MGP_C57BL6NJ_G0014218.1 mouse_genomes_project 7 24721058 24722370 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008977.1 MGP_C57BL6NJ_G0007249.1 mouse_genomes_project 7 294139 307040 - Gm44257 lincRNA lincRNA MGP_C57BL6NJ_T0083089.1 MGP_C57BL6NJ_G0032387.1 mouse_genomes_project 7 27939216 27951580 - MGP_C57BL6NJ_P0083089 Dll3 protein_coding protein_coding MGP_C57BL6NJ_T0083090.1 MGP_C57BL6NJ_G0032387.1 mouse_genomes_project 7 27939262 27940145 - Dll3 protein_coding processed_transcript MGP_C57BL6NJ_T0083091.1 MGP_C57BL6NJ_G0032387.1 mouse_genomes_project 7 27948013 27951114 - Dll3 protein_coding retained_intron MGP_C57BL6NJ_T0005430.1 MGP_C57BL6NJ_G0004605.1 mouse_genomes_project 7 118848190 118862576 - Gm28863 antisense antisense MGP_C57BL6NJ_T0084733.1 MGP_C57BL6NJ_G0032807.1 mouse_genomes_project 7 63420546 63451763 - MGP_C57BL6NJ_P0084733 Snurf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084734.1 MGP_C57BL6NJ_G0032807.1 mouse_genomes_project 7 63420546 63451763 - MGP_C57BL6NJ_P0084734 Snurf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084735.1 MGP_C57BL6NJ_G0032807.1 mouse_genomes_project 7 63422783 63427179 - Snurf protein_coding processed_transcript MGP_C57BL6NJ_T0084736.1 MGP_C57BL6NJ_G0032807.1 mouse_genomes_project 7 63427012 63427435 - Snurf protein_coding processed_transcript MGP_C57BL6NJ_T0084168.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47192400 47204628 - MGP_C57BL6NJ_P0084168 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084169.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47192410 47211215 - MGP_C57BL6NJ_P0084169 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084170.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47192422 47210989 - MGP_C57BL6NJ_P0084170 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084171.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47192434 47210647 - MGP_C57BL6NJ_P0084171 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084172.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47192928 47210904 - MGP_C57BL6NJ_P0084172 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084173.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47195378 47210947 - MGP_C57BL6NJ_P0084173 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0084174.1 MGP_C57BL6NJ_G0032659.1 mouse_genomes_project 7 47195529 47213648 - MGP_C57BL6NJ_P0084174 Zfp473 protein_coding protein_coding MGP_C57BL6NJ_T0011134.1 MGP_C57BL6NJ_G0009219.1 mouse_genomes_project 7 61039986 61040088 + Mir6389 miRNA miRNA MGP_C57BL6NJ_T0002463.1 MGP_C57BL6NJ_G0002352.1 mouse_genomes_project 7 153960077 153963997 + TEC TEC MGP_C57BL6NJ_T0083137.1 MGP_C57BL6NJ_G0032401.1 mouse_genomes_project 7 28220236 28223843 - MGP_C57BL6NJ_P0083137 Nccrp1 protein_coding protein_coding MGP_C57BL6NJ_T0087251.1 MGP_C57BL6NJ_G0033516.1 mouse_genomes_project 7 136558234 136565542 - MGP_C57BL6NJ_P0087251 Spn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087252.1 MGP_C57BL6NJ_G0033516.1 mouse_genomes_project 7 136559472 136564294 - MGP_C57BL6NJ_P0087252 Spn protein_coding protein_coding MGP_C57BL6NJ_T0087253.1 MGP_C57BL6NJ_G0033516.1 mouse_genomes_project 7 136559704 136565551 - MGP_C57BL6NJ_P0087253 Spn protein_coding protein_coding MGP_C57BL6NJ_T0088240.1 MGP_C57BL6NJ_G0033742.1 mouse_genomes_project 7 152801323 152804059 + MGP_C57BL6NJ_P0088240 protein_coding protein_coding MGP_C57BL6NJ_T0009018.1 MGP_C57BL6NJ_G0007285.1 mouse_genomes_project 7 36140601 36144578 + Gm45097 lincRNA lincRNA MGP_C57BL6NJ_T0086908.1 MGP_C57BL6NJ_G0033459.1 mouse_genomes_project 7 133152954 133597866 + MGP_C57BL6NJ_P0086908 Hs3st4 protein_coding protein_coding MGP_C57BL6NJ_T0016252.1 MGP_C57BL6NJ_G0014297.1 mouse_genomes_project 7 44478620 44480355 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087263.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136638523 136650722 - MGP_C57BL6NJ_P0087263 Tbc1d10b protein_coding protein_coding MGP_C57BL6NJ_T0087264.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136639786 136644822 - MGP_C57BL6NJ_P0087264 Tbc1d10b protein_coding protein_coding MGP_C57BL6NJ_T0087265.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136640121 136641050 - Tbc1d10b protein_coding retained_intron MGP_C57BL6NJ_T0087266.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136640426 136650001 - Tbc1d10b protein_coding processed_transcript MGP_C57BL6NJ_T0087267.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136640886 136642019 - Tbc1d10b protein_coding retained_intron MGP_C57BL6NJ_T0087268.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136640931 136644722 - Tbc1d10b protein_coding retained_intron MGP_C57BL6NJ_T0087269.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136641317 136644763 - Tbc1d10b protein_coding retained_intron MGP_C57BL6NJ_T0087270.1 MGP_C57BL6NJ_G0033518.1 mouse_genomes_project 7 136644021 136644543 - Tbc1d10b protein_coding retained_intron MGP_C57BL6NJ_T0100628.1 MGP_C57BL6NJ_G0038674.1 mouse_genomes_project 7 148400605 148400712 - Gm25798 snRNA snRNA MGP_C57BL6NJ_T0086516.1 MGP_C57BL6NJ_G0033372.1 mouse_genomes_project 7 122149161 122433907 + MGP_C57BL6NJ_P0086516 Spon1 protein_coding protein_coding MGP_C57BL6NJ_T0086517.1 MGP_C57BL6NJ_G0033372.1 mouse_genomes_project 7 122149337 122319469 + MGP_C57BL6NJ_P0086517 Spon1 protein_coding protein_coding MGP_C57BL6NJ_T0103402.1 MGP_C57BL6NJ_G0041194.1 mouse_genomes_project 7 32228874 32229268 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011187.1 MGP_C57BL6NJ_G0009272.1 mouse_genomes_project 7 143979807 143979930 - Gm23631 miRNA miRNA MGP_C57BL6NJ_T0086067.1 MGP_C57BL6NJ_G0033178.1 mouse_genomes_project 7 111289692 111290637 - MGP_C57BL6NJ_P0086067 Olfr642 protein_coding protein_coding MGP_C57BL6NJ_T0011173.1 MGP_C57BL6NJ_G0009258.1 mouse_genomes_project 7 119036884 119036991 + miRNA miRNA MGP_C57BL6NJ_T0082077.1 MGP_C57BL6NJ_G0032094.1 mouse_genomes_project 7 10718794 10734907 - MGP_C57BL6NJ_P0082077 Zfp329 protein_coding protein_coding MGP_C57BL6NJ_T0082078.1 MGP_C57BL6NJ_G0032094.1 mouse_genomes_project 7 10719890 10724130 - Zfp329 protein_coding processed_transcript MGP_C57BL6NJ_T0082079.1 MGP_C57BL6NJ_G0032094.1 mouse_genomes_project 7 10722147 10734911 - MGP_C57BL6NJ_P0082079 Zfp329 protein_coding protein_coding MGP_C57BL6NJ_T0082080.1 MGP_C57BL6NJ_G0032094.1 mouse_genomes_project 7 10722152 10734905 - MGP_C57BL6NJ_P0082080 Zfp329 protein_coding protein_coding MGP_C57BL6NJ_T0009077.1 MGP_C57BL6NJ_G0007329.1 mouse_genomes_project 7 69902739 69905907 + 1810008I18Rik lincRNA lincRNA MGP_C57BL6NJ_T0009078.1 MGP_C57BL6NJ_G0007329.1 mouse_genomes_project 7 69903659 69906070 + 1810008I18Rik lincRNA lincRNA MGP_C57BL6NJ_T0081932.1 MGP_C57BL6NJ_G0032011.1 mouse_genomes_project 7 1932980 1939767 + MGP_C57BL6NJ_P0081932 Zfp628 protein_coding protein_coding MGP_C57BL6NJ_T0002380.1 MGP_C57BL6NJ_G0002270.1 mouse_genomes_project 7 59391507 59396752 - TEC TEC MGP_C57BL6NJ_T0083174.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28555794 28571210 + MGP_C57BL6NJ_P0083174 Hnrnpl protein_coding protein_coding MGP_C57BL6NJ_T0083175.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28556059 28565916 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083176.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28556061 28571193 + MGP_C57BL6NJ_P0083176 Hnrnpl protein_coding protein_coding MGP_C57BL6NJ_T0083177.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28556771 28564081 + MGP_C57BL6NJ_P0083177 Hnrnpl protein_coding protein_coding MGP_C57BL6NJ_T0083178.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28559856 28571210 + MGP_C57BL6NJ_P0083178 Hnrnpl protein_coding protein_coding MGP_C57BL6NJ_T0083179.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28559903 28571184 + MGP_C57BL6NJ_P0083179 Hnrnpl protein_coding protein_coding MGP_C57BL6NJ_T0083180.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28559906 28565892 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083181.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28562311 28571193 + MGP_C57BL6NJ_P0083181 Hnrnpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083182.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28562344 28563414 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083183.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28563790 28567656 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083184.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28564061 28569667 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083185.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28566789 28567668 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0083186.1 MGP_C57BL6NJ_G0032411.1 mouse_genomes_project 7 28570156 28571188 + Hnrnpl protein_coding retained_intron MGP_C57BL6NJ_T0100627.1 MGP_C57BL6NJ_G0038673.1 mouse_genomes_project 7 139722093 139722203 + Gm23847 snRNA snRNA MGP_C57BL6NJ_T0088029.1 MGP_C57BL6NJ_G0033704.1 mouse_genomes_project 7 151610989 151620359 - MGP_C57BL6NJ_P0088029 Sigirr protein_coding protein_coding MGP_C57BL6NJ_T0085269.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86162823 86207604 - Sec11a protein_coding processed_transcript MGP_C57BL6NJ_T0085270.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86165650 86207572 - MGP_C57BL6NJ_P0085270 Sec11a protein_coding protein_coding MGP_C57BL6NJ_T0085271.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173567 86183761 - Sec11a protein_coding processed_transcript MGP_C57BL6NJ_T0085272.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173567 86181669 - Sec11a protein_coding retained_intron MGP_C57BL6NJ_T0085273.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173567 86207839 - MGP_C57BL6NJ_P0085273 Sec11a protein_coding protein_coding MGP_C57BL6NJ_T0085274.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173756 86174521 - Sec11a protein_coding retained_intron MGP_C57BL6NJ_T0085275.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173851 86207839 - MGP_C57BL6NJ_P0085275 Sec11a protein_coding protein_coding MGP_C57BL6NJ_T0085276.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86173953 86207570 - Sec11a protein_coding processed_transcript MGP_C57BL6NJ_T0085277.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86174279 86207839 - MGP_C57BL6NJ_P0085277 Sec11a protein_coding protein_coding MGP_C57BL6NJ_T0085278.1 MGP_C57BL6NJ_G0032905.1 mouse_genomes_project 7 86179085 86207801 - Sec11a protein_coding retained_intron MGP_C57BL6NJ_T0084299.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47787893 47799375 + MGP_C57BL6NJ_P0084299 protein_coding protein_coding MGP_C57BL6NJ_T0084300.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47792869 47795644 + protein_coding processed_transcript MGP_C57BL6NJ_T0084301.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47793120 47797039 + protein_coding retained_intron MGP_C57BL6NJ_T0084302.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47793156 47798962 + MGP_C57BL6NJ_P0084302 protein_coding protein_coding MGP_C57BL6NJ_T0084303.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47793253 47799374 + MGP_C57BL6NJ_P0084303 protein_coding protein_coding MGP_C57BL6NJ_T0084304.1 MGP_C57BL6NJ_G0032695.1 mouse_genomes_project 7 47797516 47799379 + protein_coding retained_intron MGP_C57BL6NJ_T0101869.1 MGP_C57BL6NJ_G0039915.1 mouse_genomes_project 7 63141158 63141237 - snoRNA snoRNA MGP_C57BL6NJ_T0005359.1 MGP_C57BL6NJ_G0004557.1 mouse_genomes_project 7 36108850 36109203 + Gm45095 antisense antisense MGP_C57BL6NJ_T0099234.1 MGP_C57BL6NJ_G0037298.1 mouse_genomes_project 7 4037615 4037709 + Gm27675 sRNA sRNA MGP_C57BL6NJ_T0101902.1 MGP_C57BL6NJ_G0039948.1 mouse_genomes_project 7 133700626 133700769 + Gm23168 snoRNA snoRNA MGP_C57BL6NJ_T0086068.1 MGP_C57BL6NJ_G0033179.1 mouse_genomes_project 7 111301201 111302146 - MGP_C57BL6NJ_P0086068 protein_coding protein_coding MGP_C57BL6NJ_T0083970.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45651754 45666978 + MGP_C57BL6NJ_P0083970 Etfb protein_coding protein_coding MGP_C57BL6NJ_T0083971.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45651790 45666842 + MGP_C57BL6NJ_P0083971 Etfb protein_coding protein_coding MGP_C57BL6NJ_T0083973.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45651801 45665751 + MGP_C57BL6NJ_P0083973 Etfb protein_coding protein_coding MGP_C57BL6NJ_T0083975.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45651821 45666959 + MGP_C57BL6NJ_P0083975 Etfb protein_coding protein_coding MGP_C57BL6NJ_T0083976.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45662034 45666959 + MGP_C57BL6NJ_P0083976 Etfb protein_coding protein_coding MGP_C57BL6NJ_T0083977.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45665678 45666958 + Etfb protein_coding processed_transcript MGP_C57BL6NJ_T0083978.1 MGP_C57BL6NJ_G0032599.1 mouse_genomes_project 7 45666213 45666961 + Etfb protein_coding processed_transcript MGP_C57BL6NJ_T0016133.1 MGP_C57BL6NJ_G0014178.1 mouse_genomes_project 7 10703969 10704595 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085669.1 MGP_C57BL6NJ_G0033026.1 mouse_genomes_project 7 105514070 105526889 + MGP_C57BL6NJ_P0085669 Wnt11 protein_coding protein_coding MGP_C57BL6NJ_T0085670.1 MGP_C57BL6NJ_G0033026.1 mouse_genomes_project 7 105514070 105534109 + MGP_C57BL6NJ_P0085670 Wnt11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085671.1 MGP_C57BL6NJ_G0033026.1 mouse_genomes_project 7 105514089 105535493 + MGP_C57BL6NJ_P0085671 Wnt11 protein_coding protein_coding MGP_C57BL6NJ_T0085672.1 MGP_C57BL6NJ_G0033026.1 mouse_genomes_project 7 105519151 105534049 + MGP_C57BL6NJ_P0085672 Wnt11 protein_coding protein_coding MGP_C57BL6NJ_T0085673.1 MGP_C57BL6NJ_G0033026.1 mouse_genomes_project 7 105519204 105533869 + MGP_C57BL6NJ_P0085673 Wnt11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085979.1 MGP_C57BL6NJ_G0033094.1 mouse_genomes_project 7 109503329 109509309 - MGP_C57BL6NJ_P0085979 Olfr544 protein_coding protein_coding MGP_C57BL6NJ_T0086161.1 MGP_C57BL6NJ_G0033243.1 mouse_genomes_project 7 113009887 113058597 + MGP_C57BL6NJ_P0086161 Cckbr protein_coding protein_coding MGP_C57BL6NJ_T0086162.1 MGP_C57BL6NJ_G0033243.1 mouse_genomes_project 7 113009890 113022682 + MGP_C57BL6NJ_P0086162 Cckbr protein_coding protein_coding MGP_C57BL6NJ_T0084374.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48071023 48099507 + MGP_C57BL6NJ_P0084374 Plekha4 protein_coding protein_coding MGP_C57BL6NJ_T0084375.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48071023 48104167 + MGP_C57BL6NJ_P0084375 Plekha4 protein_coding protein_coding MGP_C57BL6NJ_T0084376.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48077494 48104167 + MGP_C57BL6NJ_P0084376 Plekha4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084377.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48077541 48081252 + MGP_C57BL6NJ_P0084377 Plekha4 protein_coding protein_coding MGP_C57BL6NJ_T0084378.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48077606 48104167 + MGP_C57BL6NJ_P0084378 Plekha4 protein_coding protein_coding MGP_C57BL6NJ_T0084379.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48079483 48103970 + MGP_C57BL6NJ_P0084379 Plekha4 protein_coding protein_coding MGP_C57BL6NJ_T0084380.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48099772 48104167 + Plekha4 protein_coding processed_transcript MGP_C57BL6NJ_T0084381.1 MGP_C57BL6NJ_G0032712.1 mouse_genomes_project 7 48102627 48104167 + Plekha4 protein_coding retained_intron MGP_C57BL6NJ_T0083702.1 MGP_C57BL6NJ_G0032533.1 mouse_genomes_project 7 34949953 34951352 + MGP_C57BL6NJ_P0083702 Scgb1b27 protein_coding protein_coding MGP_C57BL6NJ_T0083703.1 MGP_C57BL6NJ_G0032533.1 mouse_genomes_project 7 34950037 34950920 + MGP_C57BL6NJ_P0083703 Scgb1b27 protein_coding protein_coding MGP_C57BL6NJ_T0082829.1 MGP_C57BL6NJ_G0032317.1 mouse_genomes_project 7 24913302 24914575 - MGP_C57BL6NJ_P0082829 Erich4 protein_coding protein_coding MGP_C57BL6NJ_T0100585.1 MGP_C57BL6NJ_G0038631.1 mouse_genomes_project 7 49096123 49096230 + Gm22969 snRNA snRNA MGP_C57BL6NJ_T0082063.1 MGP_C57BL6NJ_G0032085.1 mouse_genomes_project 7 10271684 10272680 - MGP_C57BL6NJ_P0082063 Vmn1r83 protein_coding protein_coding MGP_C57BL6NJ_T0088315.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153262360 153271648 - MGP_C57BL6NJ_P0088315 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088316.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153262363 153275304 - MGP_C57BL6NJ_P0088316 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088317.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153262363 153271618 - MGP_C57BL6NJ_P0088317 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088318.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153262363 153277126 - MGP_C57BL6NJ_P0088318 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088319.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153262437 153267183 - Igf2 protein_coding processed_transcript MGP_C57BL6NJ_T0088320.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153267908 153282637 - MGP_C57BL6NJ_P0088320 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088321.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153268201 153277691 - MGP_C57BL6NJ_P0088321 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088322.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153268504 153270170 - MGP_C57BL6NJ_P0088322 Igf2 protein_coding protein_coding MGP_C57BL6NJ_T0088323.1 MGP_C57BL6NJ_G0033755.1 mouse_genomes_project 7 153269594 153277026 - Igf2 protein_coding retained_intron MGP_C57BL6NJ_T0086895.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132480026 132523388 + MGP_C57BL6NJ_P0086895 Lcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0086896.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132488222 132551789 + MGP_C57BL6NJ_P0086896 Lcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0086897.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132488296 132551780 + MGP_C57BL6NJ_P0086897 Lcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0086898.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132530090 132544187 + Lcmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0086899.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132539573 132551775 + Lcmt1 protein_coding retained_intron MGP_C57BL6NJ_T0086900.1 MGP_C57BL6NJ_G0033456.1 mouse_genomes_project 7 132549290 132551779 + Lcmt1 protein_coding retained_intron MGP_C57BL6NJ_T0083530.1 MGP_C57BL6NJ_G0032490.1 mouse_genomes_project 7 30686402 30697346 + Atp4a protein_coding retained_intron MGP_C57BL6NJ_T0083531.1 MGP_C57BL6NJ_G0032490.1 mouse_genomes_project 7 30686402 30702010 + MGP_C57BL6NJ_P0083531 Atp4a protein_coding protein_coding MGP_C57BL6NJ_T0083532.1 MGP_C57BL6NJ_G0032490.1 mouse_genomes_project 7 30686425 30702009 + MGP_C57BL6NJ_P0083532 Atp4a protein_coding protein_coding MGP_C57BL6NJ_T0083533.1 MGP_C57BL6NJ_G0032490.1 mouse_genomes_project 7 30692015 30697095 + MGP_C57BL6NJ_P0083533 Atp4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083534.1 MGP_C57BL6NJ_G0032490.1 mouse_genomes_project 7 30698862 30701666 + Atp4a protein_coding retained_intron MGP_C57BL6NJ_T0082138.1 MGP_C57BL6NJ_G0032108.1 mouse_genomes_project 7 11036344 11037271 - MGP_C57BL6NJ_P0082138 Vmn1r85 protein_coding protein_coding MGP_C57BL6NJ_T0084568.1 MGP_C57BL6NJ_G0032763.1 mouse_genomes_project 7 49895233 49913383 - MGP_C57BL6NJ_P0084568 Mrgpra6 protein_coding protein_coding MGP_C57BL6NJ_T0084569.1 MGP_C57BL6NJ_G0032763.1 mouse_genomes_project 7 49895243 49898713 - MGP_C57BL6NJ_P0084569 Mrgpra6 protein_coding protein_coding MGP_C57BL6NJ_T0085548.1 MGP_C57BL6NJ_G0033002.1 mouse_genomes_project 7 103646855 103884762 + MGP_C57BL6NJ_P0085548 Gab2 protein_coding protein_coding MGP_C57BL6NJ_T0085549.1 MGP_C57BL6NJ_G0033002.1 mouse_genomes_project 7 103647092 103880852 + MGP_C57BL6NJ_P0085549 Gab2 protein_coding protein_coding MGP_C57BL6NJ_T0011097.1 MGP_C57BL6NJ_G0009182.1 mouse_genomes_project 7 22298690 22298800 + Gm25196 miRNA miRNA MGP_C57BL6NJ_T0103353.1 MGP_C57BL6NJ_G0041146.1 mouse_genomes_project 7 12496359 12499616 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011184.1 MGP_C57BL6NJ_G0009269.1 mouse_genomes_project 7 137878336 137878403 - Mir3103 miRNA miRNA MGP_C57BL6NJ_T0083723.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35173745 35203954 - MGP_C57BL6NJ_P0083723 Gpi1 protein_coding protein_coding MGP_C57BL6NJ_T0083724.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35174574 35182783 - Gpi1 protein_coding retained_intron MGP_C57BL6NJ_T0083725.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35174621 35180314 - MGP_C57BL6NJ_P0083725 Gpi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083726.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35174798 35185844 - MGP_C57BL6NJ_P0083726 Gpi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083727.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35174822 35178263 - MGP_C57BL6NJ_P0083727 Gpi1 protein_coding protein_coding MGP_C57BL6NJ_T0083728.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35175104 35203875 - MGP_C57BL6NJ_P0083728 Gpi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083729.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35175230 35178680 - Gpi1 protein_coding retained_intron MGP_C57BL6NJ_T0083730.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35187616 35203881 - Gpi1 protein_coding retained_intron MGP_C57BL6NJ_T0083731.1 MGP_C57BL6NJ_G0032538.1 mouse_genomes_project 7 35202773 35203907 - Gpi1 protein_coding retained_intron MGP_C57BL6NJ_T0009178.1 MGP_C57BL6NJ_G0007395.1 mouse_genomes_project 7 122112815 122135327 + Gm29507 lincRNA lincRNA MGP_C57BL6NJ_T0011942.1 MGP_C57BL6NJ_G0010027.1 mouse_genomes_project 7 11331814 11332094 + Gm24909 misc_RNA misc_RNA MGP_C57BL6NJ_T0085479.1 MGP_C57BL6NJ_G0032986.1 mouse_genomes_project 7 96155683 96241018 + MGP_C57BL6NJ_P0085479 Picalm protein_coding protein_coding MGP_C57BL6NJ_T0085480.1 MGP_C57BL6NJ_G0032986.1 mouse_genomes_project 7 96156024 96240886 + MGP_C57BL6NJ_P0085480 Picalm protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011952.1 MGP_C57BL6NJ_G0010037.1 mouse_genomes_project 7 80085285 80085608 + Gm24858 misc_RNA misc_RNA MGP_C57BL6NJ_T0016351.1 MGP_C57BL6NJ_G0014396.1 mouse_genomes_project 7 118629589 118630155 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103513.1 MGP_C57BL6NJ_G0041305.1 mouse_genomes_project 7 91802201 91803039 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016297.1 MGP_C57BL6NJ_G0014342.1 mouse_genomes_project 7 78384666 78385032 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082954.1 MGP_C57BL6NJ_G0032352.1 mouse_genomes_project 7 26684471 26706235 - MGP_C57BL6NJ_P0082954 Itpkc protein_coding protein_coding MGP_C57BL6NJ_T0082955.1 MGP_C57BL6NJ_G0032352.1 mouse_genomes_project 7 26685269 26690474 - Itpkc protein_coding processed_transcript MGP_C57BL6NJ_T0082956.1 MGP_C57BL6NJ_G0032352.1 mouse_genomes_project 7 26689986 26691876 - Itpkc protein_coding retained_intron MGP_C57BL6NJ_T0082957.1 MGP_C57BL6NJ_G0032352.1 mouse_genomes_project 7 26703349 26706268 - Itpkc protein_coding retained_intron MGP_C57BL6NJ_T0103504.1 MGP_C57BL6NJ_G0041296.1 mouse_genomes_project 7 91431467 91433692 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084805.1 MGP_C57BL6NJ_G0032825.1 mouse_genomes_project 7 68889305 68895251 - MGP_C57BL6NJ_P0084805 Ndnl2 protein_coding protein_coding MGP_C57BL6NJ_T0018898.1 MGP_C57BL6NJ_G0016093.1 mouse_genomes_project 7 151897273 151903237 - B230206H07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018899.1 MGP_C57BL6NJ_G0016093.1 mouse_genomes_project 7 151897310 151903265 - B230206H07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0086843.1 MGP_C57BL6NJ_G0033449.1 mouse_genomes_project 7 131272304 131275566 + MGP_C57BL6NJ_P0086843 Chp2 protein_coding protein_coding MGP_C57BL6NJ_T0086844.1 MGP_C57BL6NJ_G0033449.1 mouse_genomes_project 7 131274314 131274925 + Chp2 protein_coding processed_transcript MGP_C57BL6NJ_T0103331.1 MGP_C57BL6NJ_G0041124.1 mouse_genomes_project 7 9750254 9750646 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005480.1 MGP_C57BL6NJ_G0004642.1 mouse_genomes_project 7 154274351 154275517 + Gm15579 antisense antisense MGP_C57BL6NJ_T0083006.1 MGP_C57BL6NJ_G0032363.1 mouse_genomes_project 7 27017454 27044671 + MGP_C57BL6NJ_P0083006 Prx protein_coding protein_coding MGP_C57BL6NJ_T0083007.1 MGP_C57BL6NJ_G0032363.1 mouse_genomes_project 7 27025084 27044291 + MGP_C57BL6NJ_P0083007 Prx protein_coding protein_coding MGP_C57BL6NJ_T0083008.1 MGP_C57BL6NJ_G0032363.1 mouse_genomes_project 7 27027910 27044498 + MGP_C57BL6NJ_P0083008 Prx protein_coding protein_coding MGP_C57BL6NJ_T0103329.1 MGP_C57BL6NJ_G0041122.1 mouse_genomes_project 7 9538659 9539581 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082770.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24300710 24354789 - MGP_C57BL6NJ_P0082770 protein_coding protein_coding MGP_C57BL6NJ_T0082771.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24300710 24354789 - MGP_C57BL6NJ_P0082771 protein_coding protein_coding MGP_C57BL6NJ_T0082772.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24306694 24346754 - MGP_C57BL6NJ_P0082772 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082773.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308110 24354789 - MGP_C57BL6NJ_P0082773 protein_coding protein_coding MGP_C57BL6NJ_T0082774.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308154 24354789 - MGP_C57BL6NJ_P0082774 protein_coding protein_coding MGP_C57BL6NJ_T0082775.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308154 24354778 - MGP_C57BL6NJ_P0082775 protein_coding protein_coding MGP_C57BL6NJ_T0082776.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308154 24354789 - MGP_C57BL6NJ_P0082776 protein_coding protein_coding MGP_C57BL6NJ_T0082777.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308290 24354789 - MGP_C57BL6NJ_P0082777 protein_coding protein_coding MGP_C57BL6NJ_T0082778.1 MGP_C57BL6NJ_G0032302.1 mouse_genomes_project 7 24308882 24354813 - MGP_C57BL6NJ_P0082778 protein_coding protein_coding MGP_C57BL6NJ_T0087231.1 MGP_C57BL6NJ_G0033511.1 mouse_genomes_project 7 136440632 136444927 - MGP_C57BL6NJ_P0087231 Maz protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087232.1 MGP_C57BL6NJ_G0033511.1 mouse_genomes_project 7 136440641 136444960 - MGP_C57BL6NJ_P0087232 Maz protein_coding protein_coding MGP_C57BL6NJ_T0087233.1 MGP_C57BL6NJ_G0033511.1 mouse_genomes_project 7 136440642 136446638 - MGP_C57BL6NJ_P0087233 Maz protein_coding protein_coding MGP_C57BL6NJ_T0087234.1 MGP_C57BL6NJ_G0033511.1 mouse_genomes_project 7 136441397 136445080 - MGP_C57BL6NJ_P0087234 Maz protein_coding protein_coding MGP_C57BL6NJ_T0087235.1 MGP_C57BL6NJ_G0033511.1 mouse_genomes_project 7 136441557 136443640 - Maz protein_coding retained_intron MGP_C57BL6NJ_T0085946.1 MGP_C57BL6NJ_G0033088.1 mouse_genomes_project 7 109115606 109207395 - MGP_C57BL6NJ_P0085946 Nup98 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085947.1 MGP_C57BL6NJ_G0033088.1 mouse_genomes_project 7 109129356 109207422 - MGP_C57BL6NJ_P0085947 Nup98 protein_coding protein_coding MGP_C57BL6NJ_T0086904.1 MGP_C57BL6NJ_G0033458.1 mouse_genomes_project 7 132601354 132627852 - MGP_C57BL6NJ_P0086904 Zkscan2 protein_coding protein_coding MGP_C57BL6NJ_T0086905.1 MGP_C57BL6NJ_G0033458.1 mouse_genomes_project 7 132603714 132606900 - Zkscan2 protein_coding retained_intron MGP_C57BL6NJ_T0086906.1 MGP_C57BL6NJ_G0033458.1 mouse_genomes_project 7 132606112 132612453 - MGP_C57BL6NJ_P0086906 Zkscan2 protein_coding protein_coding MGP_C57BL6NJ_T0086907.1 MGP_C57BL6NJ_G0033458.1 mouse_genomes_project 7 132621626 132627852 - MGP_C57BL6NJ_P0086907 Zkscan2 protein_coding protein_coding MGP_C57BL6NJ_T0084023.1 MGP_C57BL6NJ_G0032616.1 mouse_genomes_project 7 46041539 46048552 + MGP_C57BL6NJ_P0084023 Klk9 protein_coding protein_coding MGP_C57BL6NJ_T0082684.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23630888 23661569 + MGP_C57BL6NJ_P0082684 Xrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0082685.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23631749 23661572 + MGP_C57BL6NJ_P0082685 Xrcc1 protein_coding protein_coding MGP_C57BL6NJ_T0082686.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23631797 23646474 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082687.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23631800 23638023 + Xrcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0082688.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23631884 23633141 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082689.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23631932 23652719 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082690.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23651348 23653320 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082691.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23653141 23658826 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082692.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23657835 23658844 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082693.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23657990 23659060 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082694.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23658663 23661574 + Xrcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0082695.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23659847 23661568 + Xrcc1 protein_coding retained_intron MGP_C57BL6NJ_T0082696.1 MGP_C57BL6NJ_G0032282.1 mouse_genomes_project 7 23660359 23661568 + Xrcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0083593.1 MGP_C57BL6NJ_G0032502.1 mouse_genomes_project 7 30985804 30986528 - protein_coding processed_transcript MGP_C57BL6NJ_T0009009.1 MGP_C57BL6NJ_G0007277.1 mouse_genomes_project 7 30953638 30993308 + Gm44662 lincRNA lincRNA MGP_C57BL6NJ_T0002362.1 MGP_C57BL6NJ_G0002252.1 mouse_genomes_project 7 44787040 44787165 - TEC TEC MGP_C57BL6NJ_T0098888.1 MGP_C57BL6NJ_G0036952.1 mouse_genomes_project 7 65927297 65932738 - pseudogene pseudogene MGP_C57BL6NJ_T0083054.1 MGP_C57BL6NJ_G0032373.1 mouse_genomes_project 7 27431638 27460959 + MGP_C57BL6NJ_P0083054 protein_coding protein_coding MGP_C57BL6NJ_T0085226.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85668782 85677929 - MGP_C57BL6NJ_P0085226 Blm protein_coding protein_coding MGP_C57BL6NJ_T0085227.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85669042 85752968 - MGP_C57BL6NJ_P0085227 Blm protein_coding protein_coding MGP_C57BL6NJ_T0085228.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85669141 85752847 - MGP_C57BL6NJ_P0085228 Blm protein_coding protein_coding MGP_C57BL6NJ_T0085229.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85669287 85671424 - Blm protein_coding processed_transcript MGP_C57BL6NJ_T0085230.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85669442 85673305 - Blm protein_coding retained_intron MGP_C57BL6NJ_T0085231.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85669470 85674876 - MGP_C57BL6NJ_P0085231 Blm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085232.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85678810 85681523 - MGP_C57BL6NJ_P0085232 Blm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085233.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85683300 85732588 - Blm protein_coding retained_intron MGP_C57BL6NJ_T0085234.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85683326 85685833 - Blm protein_coding retained_intron MGP_C57BL6NJ_T0085235.1 MGP_C57BL6NJ_G0032899.1 mouse_genomes_project 7 85688153 85697729 - Blm protein_coding retained_intron MGP_C57BL6NJ_T0085426.1 MGP_C57BL6NJ_G0032969.1 mouse_genomes_project 7 92566994 92622615 - MGP_C57BL6NJ_P0085426 Folh1 protein_coding protein_coding MGP_C57BL6NJ_T0085427.1 MGP_C57BL6NJ_G0032969.1 mouse_genomes_project 7 92566994 92622559 - MGP_C57BL6NJ_P0085427 Folh1 protein_coding protein_coding MGP_C57BL6NJ_T0086023.1 MGP_C57BL6NJ_G0033134.1 mouse_genomes_project 7 110430002 110430950 + MGP_C57BL6NJ_P0086023 Olfr599 protein_coding protein_coding MGP_C57BL6NJ_T0016339.1 MGP_C57BL6NJ_G0014384.1 mouse_genomes_project 7 108043970 108044381 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103426.1 MGP_C57BL6NJ_G0041218.1 mouse_genomes_project 7 42618290 42622910 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102312.1 MGP_C57BL6NJ_G0040277.1 mouse_genomes_project 7 40994790 40995135 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102313.1 MGP_C57BL6NJ_G0040277.1 mouse_genomes_project 7 40995069 40998182 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0083136.1 MGP_C57BL6NJ_G0032400.1 mouse_genomes_project 7 28217525 28218851 + MGP_C57BL6NJ_P0083136 Sycn protein_coding protein_coding MGP_C57BL6NJ_T0083620.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119774 31123691 - MGP_C57BL6NJ_P0083620 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083621.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119774 31123506 - MGP_C57BL6NJ_P0083621 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083622.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119776 31121629 - Fxyd1 protein_coding retained_intron MGP_C57BL6NJ_T0083623.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119776 31123764 - MGP_C57BL6NJ_P0083623 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083624.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119776 31122897 - MGP_C57BL6NJ_P0083624 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083625.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119777 31121219 - MGP_C57BL6NJ_P0083625 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083626.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119777 31123753 - MGP_C57BL6NJ_P0083626 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083627.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119778 31120290 - Fxyd1 protein_coding retained_intron MGP_C57BL6NJ_T0083628.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119778 31122904 - MGP_C57BL6NJ_P0083628 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083629.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119778 31122885 - MGP_C57BL6NJ_P0083629 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083630.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119779 31122915 - MGP_C57BL6NJ_P0083630 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083631.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119804 31123679 - MGP_C57BL6NJ_P0083631 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083632.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31119824 31122916 - MGP_C57BL6NJ_P0083632 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083633.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31120031 31123805 - MGP_C57BL6NJ_P0083633 Fxyd1 protein_coding protein_coding MGP_C57BL6NJ_T0083634.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31120224 31122142 - Fxyd1 protein_coding retained_intron MGP_C57BL6NJ_T0083635.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31121585 31123720 - Fxyd1 protein_coding retained_intron MGP_C57BL6NJ_T0083636.1 MGP_C57BL6NJ_G0032508.1 mouse_genomes_project 7 31121859 31125278 - Fxyd1 protein_coding retained_intron MGP_C57BL6NJ_T0016245.1 MGP_C57BL6NJ_G0014290.1 mouse_genomes_project 7 43416344 43418769 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086294.1 MGP_C57BL6NJ_G0033290.1 mouse_genomes_project 7 115549221 115550412 - MGP_C57BL6NJ_P0086294 5330417H12Rik protein_coding protein_coding MGP_C57BL6NJ_T0082698.1 MGP_C57BL6NJ_G0032284.1 mouse_genomes_project 7 23675866 23698716 + MGP_C57BL6NJ_P0082698 Ethe1 protein_coding protein_coding MGP_C57BL6NJ_T0082404.1 MGP_C57BL6NJ_G0032200.1 mouse_genomes_project 7 17844269 17855071 - MGP_C57BL6NJ_P0082404 Foxa3 protein_coding protein_coding MGP_C57BL6NJ_T0083732.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35214087 35265713 - MGP_C57BL6NJ_P0083732 4931406P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0083733.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35216506 35224176 - MGP_C57BL6NJ_P0083733 4931406P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0083734.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35217507 35223987 - 4931406P16Rik protein_coding retained_intron MGP_C57BL6NJ_T0083736.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35234215 35237393 - 4931406P16Rik protein_coding retained_intron MGP_C57BL6NJ_T0083737.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35264474 35294646 - 4931406P16Rik protein_coding retained_intron MGP_C57BL6NJ_T0083738.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35265993 35294641 - 4931406P16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0083739.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35266079 35286608 - 4931406P16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0083740.1 MGP_C57BL6NJ_G0032539.1 mouse_genomes_project 7 35293162 35294604 - 4931406P16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0011144.1 MGP_C57BL6NJ_G0009229.1 mouse_genomes_project 7 65497531 65497591 - Mir344h-1 miRNA miRNA MGP_C57BL6NJ_T0082378.1 MGP_C57BL6NJ_G0032190.1 mouse_genomes_project 7 17591721 17604846 - MGP_C57BL6NJ_P0082378 Psg19 protein_coding protein_coding MGP_C57BL6NJ_T0082379.1 MGP_C57BL6NJ_G0032190.1 mouse_genomes_project 7 17591948 17604846 - MGP_C57BL6NJ_P0082379 Psg19 protein_coding protein_coding MGP_C57BL6NJ_T0082380.1 MGP_C57BL6NJ_G0032190.1 mouse_genomes_project 7 17600263 17604856 - Psg19 protein_coding processed_transcript MGP_C57BL6NJ_T0082381.1 MGP_C57BL6NJ_G0032190.1 mouse_genomes_project 7 17603084 17604846 - Psg19 protein_coding retained_intron MGP_C57BL6NJ_T0101873.1 MGP_C57BL6NJ_G0039919.1 mouse_genomes_project 7 66461852 66461980 + Gm22494 snoRNA snoRNA MGP_C57BL6NJ_T0100597.1 MGP_C57BL6NJ_G0038643.1 mouse_genomes_project 7 82882219 82882400 - Gm23239 snRNA snRNA MGP_C57BL6NJ_T0081715.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 569175 580785 - MGP_C57BL6NJ_P0081715 Tmc4 protein_coding protein_coding MGP_C57BL6NJ_T0081716.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 569183 570276 - MGP_C57BL6NJ_P0081716 Tmc4 protein_coding protein_coding MGP_C57BL6NJ_T0081717.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 569350 573859 - Tmc4 protein_coding retained_intron MGP_C57BL6NJ_T0081718.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 573953 579934 - Tmc4 protein_coding retained_intron MGP_C57BL6NJ_T0081719.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 574067 580831 - Tmc4 protein_coding retained_intron MGP_C57BL6NJ_T0081720.1 MGP_C57BL6NJ_G0031970.1 mouse_genomes_project 7 578453 580791 - Tmc4 protein_coding retained_intron MGP_C57BL6NJ_T0008997.1 MGP_C57BL6NJ_G0007267.1 mouse_genomes_project 7 24154467 24157821 + Gm44970 lincRNA lincRNA MGP_C57BL6NJ_T0087956.1 MGP_C57BL6NJ_G0033680.1 mouse_genomes_project 7 151124028 151125628 + MGP_C57BL6NJ_P0087956 Olfr539 protein_coding protein_coding MGP_C57BL6NJ_T0009068.1 MGP_C57BL6NJ_G0007322.1 mouse_genomes_project 7 67890378 67897802 + Gm45052 lincRNA lincRNA MGP_C57BL6NJ_T0009156.1 MGP_C57BL6NJ_G0007381.1 mouse_genomes_project 7 99268083 99376310 + Gm26862 lincRNA lincRNA MGP_C57BL6NJ_T0083923.1 MGP_C57BL6NJ_G0032578.1 mouse_genomes_project 7 43728421 43788592 - MGP_C57BL6NJ_P0083923 Vmn2r58 protein_coding protein_coding MGP_C57BL6NJ_T0100589.1 MGP_C57BL6NJ_G0038635.1 mouse_genomes_project 7 58604823 58604930 - Gm24116 snRNA snRNA MGP_C57BL6NJ_T0087518.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137830816 137843494 + MGP_C57BL6NJ_P0087518 Tgfb1i1 protein_coding protein_coding MGP_C57BL6NJ_T0087519.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137830842 137841199 + MGP_C57BL6NJ_P0087519 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087520.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137830877 137841506 + MGP_C57BL6NJ_P0087520 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087521.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137830877 137841160 + MGP_C57BL6NJ_P0087521 Tgfb1i1 protein_coding protein_coding MGP_C57BL6NJ_T0087522.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835812 137841506 + Tgfb1i1 protein_coding retained_intron MGP_C57BL6NJ_T0087523.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835812 137841506 + Tgfb1i1 protein_coding retained_intron MGP_C57BL6NJ_T0087524.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835812 137841506 + Tgfb1i1 protein_coding retained_intron MGP_C57BL6NJ_T0087525.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835812 137841506 + Tgfb1i1 protein_coding retained_intron MGP_C57BL6NJ_T0087526.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835812 137841506 + Tgfb1i1 protein_coding retained_intron MGP_C57BL6NJ_T0087527.1 MGP_C57BL6NJ_G0033571.1 mouse_genomes_project 7 137835970 137841161 + MGP_C57BL6NJ_P0087527 Tgfb1i1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086096.1 MGP_C57BL6NJ_G0033195.1 mouse_genomes_project 7 111691212 111711327 - protein_coding retained_intron MGP_C57BL6NJ_T0086097.1 MGP_C57BL6NJ_G0033195.1 mouse_genomes_project 7 111691212 111694447 - MGP_C57BL6NJ_P0086097 protein_coding protein_coding MGP_C57BL6NJ_T0086098.1 MGP_C57BL6NJ_G0033195.1 mouse_genomes_project 7 111692650 111703541 - MGP_C57BL6NJ_P0086098 protein_coding protein_coding MGP_C57BL6NJ_T0086099.1 MGP_C57BL6NJ_G0033195.1 mouse_genomes_project 7 111693384 111694444 - protein_coding retained_intron MGP_C57BL6NJ_T0086100.1 MGP_C57BL6NJ_G0033195.1 mouse_genomes_project 7 111698772 111711225 - MGP_C57BL6NJ_P0086100 protein_coding protein_coding MGP_C57BL6NJ_T0085439.1 MGP_C57BL6NJ_G0032973.1 mouse_genomes_project 7 93322453 93393584 - MGP_C57BL6NJ_P0085439 Tyr protein_coding protein_coding MGP_C57BL6NJ_T0011095.1 MGP_C57BL6NJ_G0009180.1 mouse_genomes_project 7 18030279 18030377 + Mir330 miRNA miRNA MGP_C57BL6NJ_T0002343.1 MGP_C57BL6NJ_G0002233.1 mouse_genomes_project 7 31284024 31284782 + TEC TEC MGP_C57BL6NJ_T0016248.1 MGP_C57BL6NJ_G0014293.1 mouse_genomes_project 7 43540768 43541418 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009235.1 MGP_C57BL6NJ_G0007431.1 mouse_genomes_project 7 140258366 140261633 + lincRNA lincRNA MGP_C57BL6NJ_T0086291.1 MGP_C57BL6NJ_G0033288.1 mouse_genomes_project 7 115489425 115513915 + MGP_C57BL6NJ_P0086291 Olfml1 protein_coding protein_coding MGP_C57BL6NJ_T0087078.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136088155 136092603 - MGP_C57BL6NJ_P0087078 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087079.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136088155 136093199 - MGP_C57BL6NJ_P0087079 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087080.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136088263 136091556 - MGP_C57BL6NJ_P0087080 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087081.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136088693 136089610 - Coro1a protein_coding retained_intron MGP_C57BL6NJ_T0087082.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136088737 136089643 - Coro1a protein_coding retained_intron MGP_C57BL6NJ_T0087083.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136089373 136090478 - Coro1a protein_coding retained_intron MGP_C57BL6NJ_T0087084.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136089374 136091557 - MGP_C57BL6NJ_P0087084 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087085.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136089712 136090855 - Coro1a protein_coding retained_intron MGP_C57BL6NJ_T0087086.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136089729 136093137 - MGP_C57BL6NJ_P0087086 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087087.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136090273 136092930 - MGP_C57BL6NJ_P0087087 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087088.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136090284 136096219 - MGP_C57BL6NJ_P0087088 Coro1a protein_coding protein_coding MGP_C57BL6NJ_T0087089.1 MGP_C57BL6NJ_G0033488.1 mouse_genomes_project 7 136091214 136093136 - Coro1a protein_coding retained_intron MGP_C57BL6NJ_T0009207.1 MGP_C57BL6NJ_G0007413.1 mouse_genomes_project 7 135551957 135583097 - Gm44875 lincRNA lincRNA MGP_C57BL6NJ_T0082928.1 MGP_C57BL6NJ_G0032346.1 mouse_genomes_project 7 26630174 26638405 - MGP_C57BL6NJ_P0082928 Egln2 protein_coding protein_coding MGP_C57BL6NJ_T0082929.1 MGP_C57BL6NJ_G0032346.1 mouse_genomes_project 7 26630175 26632387 - Egln2 protein_coding processed_transcript MGP_C57BL6NJ_T0082930.1 MGP_C57BL6NJ_G0032346.1 mouse_genomes_project 7 26630504 26637929 - MGP_C57BL6NJ_P0082930 Egln2 protein_coding protein_coding MGP_C57BL6NJ_T0082931.1 MGP_C57BL6NJ_G0032346.1 mouse_genomes_project 7 26637048 26637798 - Egln2 protein_coding processed_transcript MGP_C57BL6NJ_T0086163.1 MGP_C57BL6NJ_G0033244.1 mouse_genomes_project 7 113069576 113071167 - MGP_C57BL6NJ_P0086163 Prkcdbp protein_coding protein_coding MGP_C57BL6NJ_T0086276.1 MGP_C57BL6NJ_G0033278.1 mouse_genomes_project 7 114884919 114886990 - MGP_C57BL6NJ_P0086276 Olfr2 protein_coding protein_coding MGP_C57BL6NJ_T0085015.1 MGP_C57BL6NJ_G0032863.1 mouse_genomes_project 7 83829408 83840286 - MGP_C57BL6NJ_P0085015 protein_coding protein_coding MGP_C57BL6NJ_T0085016.1 MGP_C57BL6NJ_G0032863.1 mouse_genomes_project 7 83830728 83853309 - MGP_C57BL6NJ_P0085016 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085017.1 MGP_C57BL6NJ_G0032863.1 mouse_genomes_project 7 83836441 83849351 - MGP_C57BL6NJ_P0085017 protein_coding protein_coding MGP_C57BL6NJ_T0085391.1 MGP_C57BL6NJ_G0032939.1 mouse_genomes_project 7 89766109 89932287 - MGP_C57BL6NJ_P0085391 Arnt2 protein_coding protein_coding MGP_C57BL6NJ_T0081939.1 MGP_C57BL6NJ_G0032015.1 mouse_genomes_project 7 1988607 1994309 - MGP_C57BL6NJ_P0081939 Sbk3 protein_coding protein_coding MGP_C57BL6NJ_T0081940.1 MGP_C57BL6NJ_G0032015.1 mouse_genomes_project 7 1990687 1994516 - MGP_C57BL6NJ_P0081940 Sbk3 protein_coding protein_coding MGP_C57BL6NJ_T0102573.1 MGP_C57BL6NJ_G0040403.1 mouse_genomes_project 7 46609239 46615644 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102574.1 MGP_C57BL6NJ_G0040403.1 mouse_genomes_project 7 46609241 46611933 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0011143.1 MGP_C57BL6NJ_G0009228.1 mouse_genomes_project 7 65497529 65497595 - Mir344e miRNA miRNA MGP_C57BL6NJ_T0085978.1 MGP_C57BL6NJ_G0033093.1 mouse_genomes_project 7 109495988 109497118 - MGP_C57BL6NJ_P0085978 Olfr543 protein_coding protein_coding MGP_C57BL6NJ_T0005337.1 MGP_C57BL6NJ_G0004540.1 mouse_genomes_project 7 27545572 27548966 + Gm26891 antisense antisense MGP_C57BL6NJ_T0100620.1 MGP_C57BL6NJ_G0038666.1 mouse_genomes_project 7 133109826 133109932 - Gm23788 snRNA snRNA MGP_C57BL6NJ_T0088073.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151794392 151798108 - MGP_C57BL6NJ_P0088073 Irf7 protein_coding protein_coding MGP_C57BL6NJ_T0088074.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151794869 151798168 - MGP_C57BL6NJ_P0088074 Irf7 protein_coding protein_coding MGP_C57BL6NJ_T0088075.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151794870 151798110 - MGP_C57BL6NJ_P0088075 Irf7 protein_coding protein_coding MGP_C57BL6NJ_T0088076.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151794873 151798109 - Irf7 protein_coding retained_intron MGP_C57BL6NJ_T0088077.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151795118 151796979 - MGP_C57BL6NJ_P0088077 Irf7 protein_coding protein_coding MGP_C57BL6NJ_T0088078.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151795477 151796818 - Irf7 protein_coding retained_intron MGP_C57BL6NJ_T0088079.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151795659 151797731 - Irf7 protein_coding processed_transcript MGP_C57BL6NJ_T0088080.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151795909 151797160 - Irf7 protein_coding retained_intron MGP_C57BL6NJ_T0088081.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151796486 151797394 - Irf7 protein_coding retained_intron MGP_C57BL6NJ_T0088082.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151796901 151797671 - Irf7 protein_coding retained_intron MGP_C57BL6NJ_T0088083.1 MGP_C57BL6NJ_G0033713.1 mouse_genomes_project 7 151797062 151798108 - Irf7 protein_coding processed_transcript MGP_C57BL6NJ_T0084539.1 MGP_C57BL6NJ_G0032754.1 mouse_genomes_project 7 49463533 49492967 + MGP_C57BL6NJ_P0084539 Gtf2h1 protein_coding protein_coding MGP_C57BL6NJ_T0084540.1 MGP_C57BL6NJ_G0032754.1 mouse_genomes_project 7 49463544 49472956 + MGP_C57BL6NJ_P0084540 Gtf2h1 protein_coding protein_coding MGP_C57BL6NJ_T0084541.1 MGP_C57BL6NJ_G0032754.1 mouse_genomes_project 7 49464101 49492442 + MGP_C57BL6NJ_P0084541 Gtf2h1 protein_coding protein_coding MGP_C57BL6NJ_T0084542.1 MGP_C57BL6NJ_G0032754.1 mouse_genomes_project 7 49469120 49492076 + MGP_C57BL6NJ_P0084542 Gtf2h1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084543.1 MGP_C57BL6NJ_G0032754.1 mouse_genomes_project 7 49476380 49483347 + Gtf2h1 protein_coding retained_intron MGP_C57BL6NJ_T0083780.1 MGP_C57BL6NJ_G0032548.1 mouse_genomes_project 7 36269000 36271933 - Lrp3 protein_coding processed_transcript MGP_C57BL6NJ_T0083781.1 MGP_C57BL6NJ_G0032548.1 mouse_genomes_project 7 36269851 36272199 - Lrp3 protein_coding retained_intron MGP_C57BL6NJ_T0083782.1 MGP_C57BL6NJ_G0032548.1 mouse_genomes_project 7 36269851 36284532 - MGP_C57BL6NJ_P0083782 Lrp3 protein_coding protein_coding MGP_C57BL6NJ_T0083783.1 MGP_C57BL6NJ_G0032548.1 mouse_genomes_project 7 36269852 36284326 - MGP_C57BL6NJ_P0083783 Lrp3 protein_coding protein_coding MGP_C57BL6NJ_T0011079.1 MGP_C57BL6NJ_G0009164.1 mouse_genomes_project 7 103714 103776 - Mir292b miRNA miRNA MGP_C57BL6NJ_T0009237.1 MGP_C57BL6NJ_G0007433.1 mouse_genomes_project 7 140941646 140945788 + 1700029B22Rik lincRNA lincRNA MGP_C57BL6NJ_T0009238.1 MGP_C57BL6NJ_G0007433.1 mouse_genomes_project 7 140941651 140945788 + 1700029B22Rik lincRNA lincRNA MGP_C57BL6NJ_T0009239.1 MGP_C57BL6NJ_G0007433.1 mouse_genomes_project 7 140941689 140945766 + 1700029B22Rik lincRNA lincRNA MGP_C57BL6NJ_T0009151.1 MGP_C57BL6NJ_G0007376.1 mouse_genomes_project 7 90044620 90091873 + lincRNA lincRNA MGP_C57BL6NJ_T0002440.1 MGP_C57BL6NJ_G0002329.1 mouse_genomes_project 7 131475820 131478970 + TEC TEC MGP_C57BL6NJ_T0101864.1 MGP_C57BL6NJ_G0039910.1 mouse_genomes_project 7 62906971 62907059 - Gm22496 snoRNA snoRNA MGP_C57BL6NJ_T0085408.1 MGP_C57BL6NJ_G0032952.1 mouse_genomes_project 7 91922621 91948029 - MGP_C57BL6NJ_P0085408 Vmn2r75 protein_coding protein_coding MGP_C57BL6NJ_T0086045.1 MGP_C57BL6NJ_G0033156.1 mouse_genomes_project 7 110863102 110866187 + MGP_C57BL6NJ_P0086045 Olfr625-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0087496.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621344 137685831 + MGP_C57BL6NJ_P0087496 protein_coding protein_coding MGP_C57BL6NJ_T0087497.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621373 137685830 + MGP_C57BL6NJ_P0087497 protein_coding protein_coding MGP_C57BL6NJ_T0087498.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621383 137684430 + MGP_C57BL6NJ_P0087498 protein_coding protein_coding MGP_C57BL6NJ_T0087500.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621387 137684871 + MGP_C57BL6NJ_P0087500 protein_coding protein_coding MGP_C57BL6NJ_T0087501.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621432 137631370 + protein_coding processed_transcript MGP_C57BL6NJ_T0087502.1 MGP_C57BL6NJ_G0033564.1 mouse_genomes_project 7 137621447 137631612 + MGP_C57BL6NJ_P0087502 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083079.1 MGP_C57BL6NJ_G0032382.1 mouse_genomes_project 7 27809504 27819483 + MGP_C57BL6NJ_P0083079 Fbl protein_coding protein_coding MGP_C57BL6NJ_T0005306.1 MGP_C57BL6NJ_G0004519.1 mouse_genomes_project 7 1605177 1608744 + Gm44877 antisense antisense MGP_C57BL6NJ_T0002400.1 MGP_C57BL6NJ_G0002289.1 mouse_genomes_project 7 78483334 78484024 - TEC TEC MGP_C57BL6NJ_T0086106.1 MGP_C57BL6NJ_G0033198.1 mouse_genomes_project 7 111818507 111858738 - MGP_C57BL6NJ_P0086106 Trim30d protein_coding protein_coding MGP_C57BL6NJ_T0011163.1 MGP_C57BL6NJ_G0009248.1 mouse_genomes_project 7 85079879 85079975 + Gm24541 miRNA miRNA MGP_C57BL6NJ_T0016196.1 MGP_C57BL6NJ_G0014241.1 mouse_genomes_project 7 32025808 32026271 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082462.1 MGP_C57BL6NJ_G0032214.1 mouse_genomes_project 7 18110963 18127302 - MGP_C57BL6NJ_P0082462 Vasp protein_coding protein_coding MGP_C57BL6NJ_T0082463.1 MGP_C57BL6NJ_G0032214.1 mouse_genomes_project 7 18111618 18112166 - Vasp protein_coding retained_intron MGP_C57BL6NJ_T0082464.1 MGP_C57BL6NJ_G0032214.1 mouse_genomes_project 7 18114696 18115112 - Vasp protein_coding processed_transcript MGP_C57BL6NJ_T0082465.1 MGP_C57BL6NJ_G0032214.1 mouse_genomes_project 7 18114897 18122053 - Vasp protein_coding processed_transcript MGP_C57BL6NJ_T0087751.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143647682 143683097 + MGP_C57BL6NJ_P0087751 Edrf1 protein_coding protein_coding MGP_C57BL6NJ_T0087752.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143647832 143682305 + MGP_C57BL6NJ_P0087752 Edrf1 protein_coding protein_coding MGP_C57BL6NJ_T0087753.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143648000 143649489 + Edrf1 protein_coding retained_intron MGP_C57BL6NJ_T0087754.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143667244 143672021 + MGP_C57BL6NJ_P0087754 Edrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087755.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143676065 143682055 + MGP_C57BL6NJ_P0087755 Edrf1 protein_coding protein_coding MGP_C57BL6NJ_T0087756.1 MGP_C57BL6NJ_G0033615.1 mouse_genomes_project 7 143677345 143681596 + Edrf1 protein_coding retained_intron MGP_C57BL6NJ_T0085686.1 MGP_C57BL6NJ_G0033033.1 mouse_genomes_project 7 106175673 106183692 + MGP_C57BL6NJ_P0085686 Klhl35 protein_coding protein_coding MGP_C57BL6NJ_T0085687.1 MGP_C57BL6NJ_G0033033.1 mouse_genomes_project 7 106178632 106181456 + MGP_C57BL6NJ_P0085687 Klhl35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085688.1 MGP_C57BL6NJ_G0033033.1 mouse_genomes_project 7 106179624 106181543 + Klhl35 protein_coding retained_intron MGP_C57BL6NJ_T0085689.1 MGP_C57BL6NJ_G0033033.1 mouse_genomes_project 7 106181495 106183274 + MGP_C57BL6NJ_P0085689 Klhl35 protein_coding protein_coding MGP_C57BL6NJ_T0086295.1 MGP_C57BL6NJ_G0033291.1 mouse_genomes_project 7 115674935 115684513 - MGP_C57BL6NJ_P0086295 Cyb5r2 protein_coding protein_coding MGP_C57BL6NJ_T0086296.1 MGP_C57BL6NJ_G0033291.1 mouse_genomes_project 7 115676704 115683743 - MGP_C57BL6NJ_P0086296 Cyb5r2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085652.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105243710 105321969 - MGP_C57BL6NJ_P0085652 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085653.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105247325 105321736 - MGP_C57BL6NJ_P0085653 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085654.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105248989 105321741 - MGP_C57BL6NJ_P0085654 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085655.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105249654 105252619 - Emsy protein_coding retained_intron MGP_C57BL6NJ_T0085656.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105251882 105253400 - Emsy protein_coding processed_transcript MGP_C57BL6NJ_T0085657.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105253508 105274432 - MGP_C57BL6NJ_P0085657 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085658.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105254878 105262806 - Emsy protein_coding retained_intron MGP_C57BL6NJ_T0085659.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105255429 105276975 - MGP_C57BL6NJ_P0085659 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085660.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105260969 105263249 - Emsy protein_coding retained_intron MGP_C57BL6NJ_T0085661.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105263057 105321785 - MGP_C57BL6NJ_P0085661 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085662.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105292735 105321754 - MGP_C57BL6NJ_P0085662 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085663.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105299723 105307640 - MGP_C57BL6NJ_P0085663 Emsy protein_coding protein_coding MGP_C57BL6NJ_T0085664.1 MGP_C57BL6NJ_G0033024.1 mouse_genomes_project 7 105305500 105321973 - Emsy protein_coding retained_intron MGP_C57BL6NJ_T0082438.1 MGP_C57BL6NJ_G0032206.1 mouse_genomes_project 7 17942320 17963679 - MGP_C57BL6NJ_P0082438 Gm4969 protein_coding protein_coding MGP_C57BL6NJ_T0082439.1 MGP_C57BL6NJ_G0032206.1 mouse_genomes_project 7 17944825 17963652 - MGP_C57BL6NJ_P0082439 Gm4969 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083925.1 MGP_C57BL6NJ_G0032580.1 mouse_genomes_project 7 44059261 44143940 + MGP_C57BL6NJ_P0083925 Vmn2r60 protein_coding protein_coding MGP_C57BL6NJ_T0087248.1 MGP_C57BL6NJ_G0033515.1 mouse_genomes_project 7 136531729 136546666 - MGP_C57BL6NJ_P0087248 Qprt protein_coding protein_coding MGP_C57BL6NJ_T0087249.1 MGP_C57BL6NJ_G0033515.1 mouse_genomes_project 7 136533610 136546481 - Qprt protein_coding processed_transcript MGP_C57BL6NJ_T0087250.1 MGP_C57BL6NJ_G0033515.1 mouse_genomes_project 7 136540229 136546458 - Qprt protein_coding processed_transcript MGP_C57BL6NJ_T0085358.1 MGP_C57BL6NJ_G0032929.1 mouse_genomes_project 7 89019604 89027495 - MGP_C57BL6NJ_P0085358 protein_coding protein_coding MGP_C57BL6NJ_T0011127.1 MGP_C57BL6NJ_G0009212.1 mouse_genomes_project 7 47679604 47679663 + Mir7055 miRNA miRNA MGP_C57BL6NJ_T0016180.1 MGP_C57BL6NJ_G0014225.1 mouse_genomes_project 7 25460569 25461323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083112.1 MGP_C57BL6NJ_G0032393.1 mouse_genomes_project 7 28040493 28047412 - MGP_C57BL6NJ_P0083112 protein_coding protein_coding MGP_C57BL6NJ_T0103442.1 MGP_C57BL6NJ_G0041234.1 mouse_genomes_project 7 46320290 46324972 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086130.1 MGP_C57BL6NJ_G0033219.1 mouse_genomes_project 7 112390812 112391769 - MGP_C57BL6NJ_P0086130 Olfr668 protein_coding protein_coding MGP_C57BL6NJ_T0085356.1 MGP_C57BL6NJ_G0032927.1 mouse_genomes_project 7 88300787 88305018 + MGP_C57BL6NJ_P0085356 Mex3b protein_coding protein_coding MGP_C57BL6NJ_T0084489.1 MGP_C57BL6NJ_G0032743.1 mouse_genomes_project 7 48729769 48809458 - MGP_C57BL6NJ_P0084489 Abcc8 protein_coding protein_coding MGP_C57BL6NJ_T0084490.1 MGP_C57BL6NJ_G0032743.1 mouse_genomes_project 7 48729770 48809374 - MGP_C57BL6NJ_P0084490 Abcc8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016116.1 MGP_C57BL6NJ_G0014161.1 mouse_genomes_project 7 1232015 1232382 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087823.1 MGP_C57BL6NJ_G0033636.1 mouse_genomes_project 7 149165212 149179219 - MGP_C57BL6NJ_P0087823 Mapk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0087824.1 MGP_C57BL6NJ_G0033636.1 mouse_genomes_project 7 149165222 149179206 - MGP_C57BL6NJ_P0087824 Mapk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0087825.1 MGP_C57BL6NJ_G0033636.1 mouse_genomes_project 7 149165267 149179203 - MGP_C57BL6NJ_P0087825 Mapk1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0086270.1 MGP_C57BL6NJ_G0033272.1 mouse_genomes_project 7 114761802 114762753 - MGP_C57BL6NJ_P0086270 protein_coding protein_coding MGP_C57BL6NJ_T0084175.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211010 47241789 + MGP_C57BL6NJ_P0084175 Vrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084176.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211082 47220703 + Vrk3 protein_coding retained_intron MGP_C57BL6NJ_T0084177.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211181 47222367 + MGP_C57BL6NJ_P0084177 Vrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084178.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211233 47241789 + MGP_C57BL6NJ_P0084178 Vrk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084179.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211243 47225653 + MGP_C57BL6NJ_P0084179 Vrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084180.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211244 47227401 + MGP_C57BL6NJ_P0084180 Vrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084181.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47211540 47216554 + MGP_C57BL6NJ_P0084181 Vrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084182.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47214710 47222005 + Vrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0084183.1 MGP_C57BL6NJ_G0032660.1 mouse_genomes_project 7 47214712 47222005 + Vrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0087957.1 MGP_C57BL6NJ_G0033681.1 mouse_genomes_project 7 151146290 151147325 + MGP_C57BL6NJ_P0087957 Olfr45 protein_coding protein_coding MGP_C57BL6NJ_T0103383.1 MGP_C57BL6NJ_G0041175.1 mouse_genomes_project 7 25341402 25348363 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002383.1 MGP_C57BL6NJ_G0002273.1 mouse_genomes_project 7 67874408 67875939 + TEC TEC MGP_C57BL6NJ_T0005360.1 MGP_C57BL6NJ_G0004558.1 mouse_genomes_project 7 36178900 36180462 - Gm45091 antisense antisense MGP_C57BL6NJ_T0084786.1 MGP_C57BL6NJ_G0032821.1 mouse_genomes_project 7 68339870 68355857 - MGP_C57BL6NJ_P0084786 Mphosph10 protein_coding protein_coding MGP_C57BL6NJ_T0084787.1 MGP_C57BL6NJ_G0032821.1 mouse_genomes_project 7 68340619 68348109 - Mphosph10 protein_coding retained_intron MGP_C57BL6NJ_T0084788.1 MGP_C57BL6NJ_G0032821.1 mouse_genomes_project 7 68351576 68355825 - Mphosph10 protein_coding retained_intron MGP_C57BL6NJ_T0082178.1 MGP_C57BL6NJ_G0032124.1 mouse_genomes_project 7 12336747 12371373 - MGP_C57BL6NJ_P0082178 Sult2a6 protein_coding protein_coding MGP_C57BL6NJ_T0082179.1 MGP_C57BL6NJ_G0032124.1 mouse_genomes_project 7 12336755 12371373 - MGP_C57BL6NJ_P0082179 Sult2a6 protein_coding protein_coding MGP_C57BL6NJ_T0103317.1 MGP_C57BL6NJ_G0041110.1 mouse_genomes_project 7 1182324 1186441 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081971.1 MGP_C57BL6NJ_G0032032.1 mouse_genomes_project 7 2329875 2395452 - MGP_C57BL6NJ_P0081971 Nlrp2 protein_coding protein_coding MGP_C57BL6NJ_T0086602.1 MGP_C57BL6NJ_G0033386.1 mouse_genomes_project 7 125074247 125114713 + MGP_C57BL6NJ_P0086602 Nucb2 protein_coding protein_coding MGP_C57BL6NJ_T0086603.1 MGP_C57BL6NJ_G0033386.1 mouse_genomes_project 7 125074262 125080989 + Nucb2 protein_coding processed_transcript MGP_C57BL6NJ_T0086604.1 MGP_C57BL6NJ_G0033386.1 mouse_genomes_project 7 125074293 125114572 + MGP_C57BL6NJ_P0086604 Nucb2 protein_coding protein_coding MGP_C57BL6NJ_T0086605.1 MGP_C57BL6NJ_G0033386.1 mouse_genomes_project 7 125101834 125109056 + MGP_C57BL6NJ_P0086605 Nucb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016376.1 MGP_C57BL6NJ_G0014421.1 mouse_genomes_project 7 136738273 136738615 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018799.1 MGP_C57BL6NJ_G0016050.1 mouse_genomes_project 7 26942897 26944131 + Gm44924 processed_transcript processed_transcript MGP_C57BL6NJ_T0009197.1 MGP_C57BL6NJ_G0007406.1 mouse_genomes_project 7 130584949 130586638 + 1700025J12Rik lincRNA lincRNA MGP_C57BL6NJ_T0011092.1 MGP_C57BL6NJ_G0009177.1 mouse_genomes_project 7 16231124 16231234 + Gm25068 miRNA miRNA MGP_C57BL6NJ_T0103345.1 MGP_C57BL6NJ_G0041138.1 mouse_genomes_project 7 11210700 11210901 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086301.1 MGP_C57BL6NJ_G0033296.1 mouse_genomes_project 7 115924393 115926365 + MGP_C57BL6NJ_P0086301 Olfr473 protein_coding protein_coding MGP_C57BL6NJ_T0087944.1 MGP_C57BL6NJ_G0033668.1 mouse_genomes_project 7 150764527 150765505 + MGP_C57BL6NJ_P0087944 Olfr527 protein_coding protein_coding MGP_C57BL6NJ_T0082863.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25035397 25043380 - MGP_C57BL6NJ_P0082863 Ccdc97 protein_coding protein_coding MGP_C57BL6NJ_T0082864.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25037226 25040398 - Ccdc97 protein_coding processed_transcript MGP_C57BL6NJ_T0082865.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25038425 25043295 - Ccdc97 protein_coding retained_intron MGP_C57BL6NJ_T0082866.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25039113 25043337 - MGP_C57BL6NJ_P0082866 Ccdc97 protein_coding protein_coding MGP_C57BL6NJ_T0082867.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25039201 25040686 - Ccdc97 protein_coding retained_intron MGP_C57BL6NJ_T0082868.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25040195 25043298 - Ccdc97 protein_coding processed_transcript MGP_C57BL6NJ_T0082869.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25040195 25043283 - Ccdc97 protein_coding processed_transcript MGP_C57BL6NJ_T0082870.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25040432 25043347 - Ccdc97 protein_coding processed_transcript MGP_C57BL6NJ_T0082871.1 MGP_C57BL6NJ_G0032325.1 mouse_genomes_project 7 25041197 25043359 - Ccdc97 protein_coding processed_transcript MGP_C57BL6NJ_T0005387.1 MGP_C57BL6NJ_G0004577.1 mouse_genomes_project 7 77961479 78029226 - A730056A06Rik antisense antisense MGP_C57BL6NJ_T0005388.1 MGP_C57BL6NJ_G0004577.1 mouse_genomes_project 7 77963729 78029235 - A730056A06Rik antisense antisense MGP_C57BL6NJ_T0005336.1 MGP_C57BL6NJ_G0004539.1 mouse_genomes_project 7 27022845 27028227 - Gm15541 antisense antisense MGP_C57BL6NJ_T0009182.1 MGP_C57BL6NJ_G0007398.1 mouse_genomes_project 7 123393656 123400032 - Gm45020 lincRNA lincRNA MGP_C57BL6NJ_T0099509.1 MGP_C57BL6NJ_G0037562.1 mouse_genomes_project 7 3686422 3687005 + Gm16306 sense_intronic sense_intronic MGP_C57BL6NJ_T0086280.1 MGP_C57BL6NJ_G0033282.1 mouse_genomes_project 7 115022361 115023489 - MGP_C57BL6NJ_P0086280 protein_coding protein_coding MGP_C57BL6NJ_T0082260.1 MGP_C57BL6NJ_G0032150.1 mouse_genomes_project 7 14694974 14696653 - MGP_C57BL6NJ_P0082260 Inafm1 protein_coding protein_coding MGP_C57BL6NJ_T0087661.1 MGP_C57BL6NJ_G0033590.1 mouse_genomes_project 7 140804624 140919118 + MGP_C57BL6NJ_P0087661 Dmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0009003.1 MGP_C57BL6NJ_G0007271.1 mouse_genomes_project 7 25203870 25217516 + Gm30146 lincRNA lincRNA MGP_C57BL6NJ_T0084618.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761650 52843944 + MGP_C57BL6NJ_P0084618 Prmt3 protein_coding protein_coding MGP_C57BL6NJ_T0084619.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761650 52765810 + MGP_C57BL6NJ_P0084619 Prmt3 protein_coding protein_coding MGP_C57BL6NJ_T0084620.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761741 52765467 + Prmt3 protein_coding processed_transcript MGP_C57BL6NJ_T0084621.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761741 52811382 + MGP_C57BL6NJ_P0084621 Prmt3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084622.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761743 52763940 + Prmt3 protein_coding processed_transcript MGP_C57BL6NJ_T0084623.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52761848 52770619 + Prmt3 protein_coding processed_transcript MGP_C57BL6NJ_T0084624.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52763180 52770649 + MGP_C57BL6NJ_P0084624 Prmt3 protein_coding protein_coding MGP_C57BL6NJ_T0084625.1 MGP_C57BL6NJ_G0032784.1 mouse_genomes_project 7 52782825 52811578 + MGP_C57BL6NJ_P0084625 Prmt3 protein_coding protein_coding MGP_C57BL6NJ_T0085049.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84452087 84468811 - MGP_C57BL6NJ_P0085049 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085050.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84452088 84468722 - MGP_C57BL6NJ_P0085050 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085051.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84452745 84454921 - Rlbp1 protein_coding retained_intron MGP_C57BL6NJ_T0085052.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84453121 84465875 - MGP_C57BL6NJ_P0085052 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085053.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84454601 84468304 - MGP_C57BL6NJ_P0085053 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085054.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84460787 84468368 - MGP_C57BL6NJ_P0085054 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085055.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84463558 84468237 - MGP_C57BL6NJ_P0085055 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0085056.1 MGP_C57BL6NJ_G0032870.1 mouse_genomes_project 7 84465620 84468675 - MGP_C57BL6NJ_P0085056 Rlbp1 protein_coding protein_coding MGP_C57BL6NJ_T0103473.1 MGP_C57BL6NJ_G0041265.1 mouse_genomes_project 7 50639494 50640398 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005402.1 MGP_C57BL6NJ_G0004587.1 mouse_genomes_project 7 85247575 85249025 - Gm44949 antisense antisense MGP_C57BL6NJ_T0005376.1 MGP_C57BL6NJ_G0004569.1 mouse_genomes_project 7 48184831 48186975 - antisense antisense MGP_C57BL6NJ_T0005377.1 MGP_C57BL6NJ_G0004569.1 mouse_genomes_project 7 48185925 48187243 - antisense antisense MGP_C57BL6NJ_T0084334.1 MGP_C57BL6NJ_G0032701.1 mouse_genomes_project 7 47928857 47934284 + MGP_C57BL6NJ_P0084334 Kcna7 protein_coding protein_coding MGP_C57BL6NJ_T0016143.1 MGP_C57BL6NJ_G0014188.1 mouse_genomes_project 7 12033886 12037952 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084236.1 MGP_C57BL6NJ_G0032671.1 mouse_genomes_project 7 47439072 47458929 - MGP_C57BL6NJ_P0084236 Cpt1c protein_coding protein_coding MGP_C57BL6NJ_T0099145.1 MGP_C57BL6NJ_G0037209.1 mouse_genomes_project 7 18992167 18992286 - n-R5s152 rRNA rRNA MGP_C57BL6NJ_T0087757.1 MGP_C57BL6NJ_G0033616.1 mouse_genomes_project 7 143684395 143690151 - Mmp21 protein_coding retained_intron MGP_C57BL6NJ_T0087758.1 MGP_C57BL6NJ_G0033616.1 mouse_genomes_project 7 143684395 143690151 - MGP_C57BL6NJ_P0087758 Mmp21 protein_coding protein_coding MGP_C57BL6NJ_T0087759.1 MGP_C57BL6NJ_G0033616.1 mouse_genomes_project 7 143684481 143690151 - MGP_C57BL6NJ_P0087759 Mmp21 protein_coding protein_coding MGP_C57BL6NJ_T0011091.1 MGP_C57BL6NJ_G0009176.1 mouse_genomes_project 7 10310044 10310154 - Gm23521 miRNA miRNA MGP_C57BL6NJ_T0082585.1 MGP_C57BL6NJ_G0032247.1 mouse_genomes_project 7 18827159 18840181 - MGP_C57BL6NJ_P0082585 Ceacam19 protein_coding protein_coding MGP_C57BL6NJ_T0103384.1 MGP_C57BL6NJ_G0041176.1 mouse_genomes_project 7 25365028 25397712 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101888.1 MGP_C57BL6NJ_G0039934.1 mouse_genomes_project 7 114200611 114200747 + Gm22372 snoRNA snoRNA MGP_C57BL6NJ_T0082596.1 MGP_C57BL6NJ_G0032253.1 mouse_genomes_project 7 22273423 22351803 + MGP_C57BL6NJ_P0082596 Nlrp5 protein_coding protein_coding MGP_C57BL6NJ_T0082597.1 MGP_C57BL6NJ_G0032253.1 mouse_genomes_project 7 22273435 22351804 + MGP_C57BL6NJ_P0082597 Nlrp5 protein_coding protein_coding MGP_C57BL6NJ_T0082598.1 MGP_C57BL6NJ_G0032253.1 mouse_genomes_project 7 22295796 22351804 + MGP_C57BL6NJ_P0082598 Nlrp5 protein_coding protein_coding MGP_C57BL6NJ_T0082599.1 MGP_C57BL6NJ_G0032253.1 mouse_genomes_project 7 22295796 22351804 + MGP_C57BL6NJ_P0082599 Nlrp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082600.1 MGP_C57BL6NJ_G0032253.1 mouse_genomes_project 7 22295796 22351804 + MGP_C57BL6NJ_P0082600 Nlrp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082042.1 MGP_C57BL6NJ_G0032069.1 mouse_genomes_project 7 8135713 8136709 + MGP_C57BL6NJ_P0082042 Vmn1r67 protein_coding protein_coding MGP_C57BL6NJ_T0085295.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86670311 86779231 - MGP_C57BL6NJ_P0085295 Cpeb1 protein_coding protein_coding MGP_C57BL6NJ_T0085296.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86670313 86760248 - MGP_C57BL6NJ_P0085296 Cpeb1 protein_coding protein_coding MGP_C57BL6NJ_T0085297.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86670314 86779231 - MGP_C57BL6NJ_P0085297 Cpeb1 protein_coding protein_coding MGP_C57BL6NJ_T0085298.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86672606 86673796 - Cpeb1 protein_coding retained_intron MGP_C57BL6NJ_T0085299.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86672887 86679281 - Cpeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0085300.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86684625 86695212 - Cpeb1 protein_coding retained_intron MGP_C57BL6NJ_T0085301.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86684625 86779938 - Cpeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0085302.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86684789 86695256 - Cpeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0085303.1 MGP_C57BL6NJ_G0032911.1 mouse_genomes_project 7 86760094 86779865 - Cpeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0005368.1 MGP_C57BL6NJ_G0004564.1 mouse_genomes_project 7 42461596 42547195 - antisense antisense MGP_C57BL6NJ_T0005369.1 MGP_C57BL6NJ_G0004564.1 mouse_genomes_project 7 42494367 42544582 - antisense antisense MGP_C57BL6NJ_T0005370.1 MGP_C57BL6NJ_G0004564.1 mouse_genomes_project 7 42496480 42521610 - antisense antisense MGP_C57BL6NJ_T0005371.1 MGP_C57BL6NJ_G0004564.1 mouse_genomes_project 7 42521792 42544860 - antisense antisense MGP_C57BL6NJ_T0084615.1 MGP_C57BL6NJ_G0032782.1 mouse_genomes_project 7 52602303 52607638 - MGP_C57BL6NJ_P0084615 Dbx1 protein_coding protein_coding MGP_C57BL6NJ_T0082513.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18396442 18404345 + MGP_C57BL6NJ_P0082513 Trappc6a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082514.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18396482 18404352 + MGP_C57BL6NJ_P0082514 Trappc6a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082515.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18396484 18404352 + MGP_C57BL6NJ_P0082515 Trappc6a protein_coding protein_coding MGP_C57BL6NJ_T0082516.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18396498 18404348 + MGP_C57BL6NJ_P0082516 Trappc6a protein_coding protein_coding MGP_C57BL6NJ_T0082517.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18396502 18403525 + Trappc6a protein_coding retained_intron MGP_C57BL6NJ_T0082518.1 MGP_C57BL6NJ_G0032228.1 mouse_genomes_project 7 18402626 18404343 + MGP_C57BL6NJ_P0082518 Trappc6a protein_coding protein_coding MGP_C57BL6NJ_T0082038.1 MGP_C57BL6NJ_G0032065.1 mouse_genomes_project 7 4643854 4666788 - MGP_C57BL6NJ_P0082038 Clcn4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002345.1 MGP_C57BL6NJ_G0002235.1 mouse_genomes_project 7 35349522 35353235 - TEC TEC MGP_C57BL6NJ_T0084570.1 MGP_C57BL6NJ_G0032764.1 mouse_genomes_project 7 49953371 49973218 - MGP_C57BL6NJ_P0084570 Mrgpra9 protein_coding protein_coding MGP_C57BL6NJ_T0084571.1 MGP_C57BL6NJ_G0032764.1 mouse_genomes_project 7 49953429 49973238 - MGP_C57BL6NJ_P0084571 Mrgpra9 protein_coding protein_coding MGP_C57BL6NJ_T0084460.1 MGP_C57BL6NJ_G0032735.1 mouse_genomes_project 7 48461553 48463032 + Kdelr1 protein_coding processed_transcript MGP_C57BL6NJ_T0084461.1 MGP_C57BL6NJ_G0032735.1 mouse_genomes_project 7 48461677 48473793 + MGP_C57BL6NJ_P0084461 Kdelr1 protein_coding protein_coding MGP_C57BL6NJ_T0084462.1 MGP_C57BL6NJ_G0032735.1 mouse_genomes_project 7 48470091 48473412 + Kdelr1 protein_coding processed_transcript MGP_C57BL6NJ_T0084789.1 MGP_C57BL6NJ_G0032822.1 mouse_genomes_project 7 68356195 68365903 + Mcee protein_coding processed_transcript MGP_C57BL6NJ_T0084790.1 MGP_C57BL6NJ_G0032822.1 mouse_genomes_project 7 68356233 68383539 + MGP_C57BL6NJ_P0084790 Mcee protein_coding protein_coding MGP_C57BL6NJ_T0084791.1 MGP_C57BL6NJ_G0032822.1 mouse_genomes_project 7 68356328 68383535 + MGP_C57BL6NJ_P0084791 Mcee protein_coding protein_coding MGP_C57BL6NJ_T0084792.1 MGP_C57BL6NJ_G0032822.1 mouse_genomes_project 7 68356363 68383535 + MGP_C57BL6NJ_P0084792 Mcee protein_coding protein_coding MGP_C57BL6NJ_T0087677.1 MGP_C57BL6NJ_G0033598.1 mouse_genomes_project 7 141203838 141231050 - MGP_C57BL6NJ_P0087677 Ikzf5 protein_coding protein_coding MGP_C57BL6NJ_T0087678.1 MGP_C57BL6NJ_G0033598.1 mouse_genomes_project 7 141205416 141231026 - MGP_C57BL6NJ_P0087678 Ikzf5 protein_coding protein_coding MGP_C57BL6NJ_T0087679.1 MGP_C57BL6NJ_G0033598.1 mouse_genomes_project 7 141207680 141230907 - MGP_C57BL6NJ_P0087679 Ikzf5 protein_coding protein_coding MGP_C57BL6NJ_T0087680.1 MGP_C57BL6NJ_G0033598.1 mouse_genomes_project 7 141208549 141231024 - MGP_C57BL6NJ_P0087680 Ikzf5 protein_coding protein_coding MGP_C57BL6NJ_T0087681.1 MGP_C57BL6NJ_G0033598.1 mouse_genomes_project 7 141213287 141229610 - MGP_C57BL6NJ_P0087681 Ikzf5 protein_coding protein_coding MGP_C57BL6NJ_T0009056.1 MGP_C57BL6NJ_G0007312.1 mouse_genomes_project 7 45899310 45899784 - Gm44819 lincRNA lincRNA MGP_C57BL6NJ_T0009084.1 MGP_C57BL6NJ_G0007334.1 mouse_genomes_project 7 72523954 72617519 + lincRNA lincRNA MGP_C57BL6NJ_T0009085.1 MGP_C57BL6NJ_G0007334.1 mouse_genomes_project 7 72527347 72608076 + lincRNA lincRNA MGP_C57BL6NJ_T0009086.1 MGP_C57BL6NJ_G0007334.1 mouse_genomes_project 7 72553500 72617517 + lincRNA lincRNA MGP_C57BL6NJ_T0009087.1 MGP_C57BL6NJ_G0007334.1 mouse_genomes_project 7 72585566 72608155 + lincRNA lincRNA MGP_C57BL6NJ_T0083004.1 MGP_C57BL6NJ_G0032362.1 mouse_genomes_project 7 27002460 27005867 + MGP_C57BL6NJ_P0083004 Sertad1 protein_coding protein_coding MGP_C57BL6NJ_T0083005.1 MGP_C57BL6NJ_G0032362.1 mouse_genomes_project 7 27002925 27005058 + MGP_C57BL6NJ_P0083005 Sertad1 protein_coding protein_coding MGP_C57BL6NJ_T0018864.1 MGP_C57BL6NJ_G0016074.1 mouse_genomes_project 7 103459462 103497776 - C230038L03Rik processed_transcript antisense MGP_C57BL6NJ_T0018865.1 MGP_C57BL6NJ_G0016074.1 mouse_genomes_project 7 103471338 103500882 - C230038L03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018866.1 MGP_C57BL6NJ_G0016074.1 mouse_genomes_project 7 103498319 103502222 - C230038L03Rik processed_transcript antisense MGP_C57BL6NJ_T0018867.1 MGP_C57BL6NJ_G0016074.1 mouse_genomes_project 7 103498651 103502628 - C230038L03Rik processed_transcript antisense MGP_C57BL6NJ_T0086841.1 MGP_C57BL6NJ_G0033448.1 mouse_genomes_project 7 131221309 131237626 - MGP_C57BL6NJ_P0086841 Ern2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086842.1 MGP_C57BL6NJ_G0033448.1 mouse_genomes_project 7 131221356 131237623 - MGP_C57BL6NJ_P0086842 Ern2 protein_coding protein_coding MGP_C57BL6NJ_T0103455.1 MGP_C57BL6NJ_G0041247.1 mouse_genomes_project 7 46508838 46516445 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008980.1 MGP_C57BL6NJ_G0007252.1 mouse_genomes_project 7 487294 500599 - Gm44920 lincRNA lincRNA MGP_C57BL6NJ_T0005468.1 MGP_C57BL6NJ_G0004633.1 mouse_genomes_project 7 142592476 142594983 - Gm15582 antisense antisense MGP_C57BL6NJ_T0087920.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150525843 150536333 - MGP_C57BL6NJ_P0087920 Echs1 protein_coding protein_coding MGP_C57BL6NJ_T0087921.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150525851 150536246 - Echs1 protein_coding retained_intron MGP_C57BL6NJ_T0087922.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150526217 150533096 - MGP_C57BL6NJ_P0087922 Echs1 protein_coding protein_coding MGP_C57BL6NJ_T0087923.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150528854 150536272 - Echs1 protein_coding retained_intron MGP_C57BL6NJ_T0087924.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150528854 150536272 - Echs1 protein_coding retained_intron MGP_C57BL6NJ_T0087925.1 MGP_C57BL6NJ_G0033658.1 mouse_genomes_project 7 150531828 150536264 - Echs1 protein_coding processed_transcript MGP_C57BL6NJ_T0082440.1 MGP_C57BL6NJ_G0032207.1 mouse_genomes_project 7 17965169 17985481 + MGP_C57BL6NJ_P0082440 Fbxo46 protein_coding protein_coding MGP_C57BL6NJ_T0082441.1 MGP_C57BL6NJ_G0032207.1 mouse_genomes_project 7 17977008 17983121 + MGP_C57BL6NJ_P0082441 Fbxo46 protein_coding protein_coding MGP_C57BL6NJ_T0086316.1 MGP_C57BL6NJ_G0033311.1 mouse_genomes_project 7 116382338 116383283 - MGP_C57BL6NJ_P0086316 Olfr493 protein_coding protein_coding MGP_C57BL6NJ_T0011188.1 MGP_C57BL6NJ_G0009273.1 mouse_genomes_project 7 145734540 145734661 + Mir1962 miRNA miRNA MGP_C57BL6NJ_T0087859.1 MGP_C57BL6NJ_G0033643.1 mouse_genomes_project 7 149581478 149601445 + MGP_C57BL6NJ_P0087859 Pwwp2b protein_coding protein_coding MGP_C57BL6NJ_T0087860.1 MGP_C57BL6NJ_G0033643.1 mouse_genomes_project 7 149581478 149601445 + MGP_C57BL6NJ_P0087860 Pwwp2b protein_coding protein_coding MGP_C57BL6NJ_T0081828.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1428975 1448794 - MGP_C57BL6NJ_P0081828 Ppp1r12c protein_coding protein_coding MGP_C57BL6NJ_T0081829.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1428975 1449113 - MGP_C57BL6NJ_P0081829 Ppp1r12c protein_coding protein_coding MGP_C57BL6NJ_T0081830.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1428978 1431488 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081831.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1429043 1430090 - Ppp1r12c protein_coding processed_transcript MGP_C57BL6NJ_T0081832.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1431089 1431955 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081833.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1431395 1432770 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081834.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1431472 1433164 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081835.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1432661 1433388 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081836.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1433606 1434190 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081837.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1436625 1449097 - Ppp1r12c protein_coding retained_intron MGP_C57BL6NJ_T0081838.1 MGP_C57BL6NJ_G0031989.1 mouse_genomes_project 7 1437264 1448962 - MGP_C57BL6NJ_P0081838 Ppp1r12c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009042.1 MGP_C57BL6NJ_G0007303.1 mouse_genomes_project 7 42312184 42328631 + 4933402C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0009043.1 MGP_C57BL6NJ_G0007303.1 mouse_genomes_project 7 42312184 42320709 + 4933402C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0086228.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366327 113372664 + MGP_C57BL6NJ_P0086228 Ilk protein_coding protein_coding MGP_C57BL6NJ_T0086229.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366406 113372657 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086230.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366460 113372664 + MGP_C57BL6NJ_P0086230 Ilk protein_coding protein_coding MGP_C57BL6NJ_T0086231.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366468 113370782 + MGP_C57BL6NJ_P0086231 Ilk protein_coding protein_coding MGP_C57BL6NJ_T0086232.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366836 113371100 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086233.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113366858 113371214 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086235.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113369926 113371503 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086236.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113370249 113370913 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086237.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113370249 113371647 + MGP_C57BL6NJ_P0086237 Ilk protein_coding protein_coding MGP_C57BL6NJ_T0086238.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113370710 113371649 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086239.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113370920 113371835 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086240.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113371321 113372515 + Ilk protein_coding retained_intron MGP_C57BL6NJ_T0086241.1 MGP_C57BL6NJ_G0033253.1 mouse_genomes_project 7 113371519 113372396 + Ilk protein_coding processed_transcript MGP_C57BL6NJ_T0009246.1 MGP_C57BL6NJ_G0007438.1 mouse_genomes_project 7 145806009 145823870 - 5830432E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0009247.1 MGP_C57BL6NJ_G0007438.1 mouse_genomes_project 7 145820043 145823901 - 5830432E09Rik lincRNA lincRNA MGP_C57BL6NJ_T0083518.1 MGP_C57BL6NJ_G0032486.1 mouse_genomes_project 7 30614910 30624234 - MGP_C57BL6NJ_P0083518 Rbm42 protein_coding protein_coding MGP_C57BL6NJ_T0083519.1 MGP_C57BL6NJ_G0032486.1 mouse_genomes_project 7 30614915 30624061 - MGP_C57BL6NJ_P0083519 Rbm42 protein_coding protein_coding MGP_C57BL6NJ_T0083520.1 MGP_C57BL6NJ_G0032486.1 mouse_genomes_project 7 30618016 30619904 - Rbm42 protein_coding retained_intron MGP_C57BL6NJ_T0100593.1 MGP_C57BL6NJ_G0038639.1 mouse_genomes_project 7 70241506 70241607 - Gm23042 snRNA snRNA MGP_C57BL6NJ_T0103485.1 MGP_C57BL6NJ_G0041277.1 mouse_genomes_project 7 51488209 51488993 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081753.1 MGP_C57BL6NJ_G0031975.1 mouse_genomes_project 7 692351 765506 - protein_coding retained_intron MGP_C57BL6NJ_T0081755.1 MGP_C57BL6NJ_G0031975.1 mouse_genomes_project 7 692670 765506 - MGP_C57BL6NJ_P0081755 protein_coding protein_coding MGP_C57BL6NJ_T0009168.1 MGP_C57BL6NJ_G0007390.1 mouse_genomes_project 7 106520401 106521940 - F730035P03Rik lincRNA lincRNA MGP_C57BL6NJ_T0084864.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835498 70858190 + MGP_C57BL6NJ_P0084864 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084865.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835503 70864562 + MGP_C57BL6NJ_P0084865 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084866.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835509 70858054 + MGP_C57BL6NJ_P0084866 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084867.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835558 70859735 + Lins1 protein_coding retained_intron MGP_C57BL6NJ_T0084868.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835567 70864559 + MGP_C57BL6NJ_P0084868 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084869.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835567 70867071 + MGP_C57BL6NJ_P0084869 Lins1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084870.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70835580 70864562 + MGP_C57BL6NJ_P0084870 Lins1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084871.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70857862 70864502 + MGP_C57BL6NJ_P0084871 Lins1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084872.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70858010 70860208 + MGP_C57BL6NJ_P0084872 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084873.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70858155 70860397 + MGP_C57BL6NJ_P0084873 Lins1 protein_coding protein_coding MGP_C57BL6NJ_T0084874.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70859241 70863665 + MGP_C57BL6NJ_P0084874 Lins1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084875.1 MGP_C57BL6NJ_G0032837.1 mouse_genomes_project 7 70859978 70867069 + Lins1 protein_coding retained_intron MGP_C57BL6NJ_T0011189.1 MGP_C57BL6NJ_G0009274.1 mouse_genomes_project 7 150185949 150186058 + Mir6401 miRNA miRNA MGP_C57BL6NJ_T0011093.1 MGP_C57BL6NJ_G0009178.1 mouse_genomes_project 7 17141519 17141614 - Gm24715 miRNA miRNA MGP_C57BL6NJ_T0002461.1 MGP_C57BL6NJ_G0002350.1 mouse_genomes_project 7 153769214 153769449 + TEC TEC MGP_C57BL6NJ_T0082037.1 MGP_C57BL6NJ_G0032064.1 mouse_genomes_project 7 4545785 4557383 - MGP_C57BL6NJ_P0082037 protein_coding protein_coding MGP_C57BL6NJ_T0085974.1 MGP_C57BL6NJ_G0033090.1 mouse_genomes_project 7 109239340 109250341 - MGP_C57BL6NJ_P0085974 Rhog protein_coding protein_coding MGP_C57BL6NJ_T0085975.1 MGP_C57BL6NJ_G0033090.1 mouse_genomes_project 7 109239340 109250306 - MGP_C57BL6NJ_P0085975 Rhog protein_coding protein_coding MGP_C57BL6NJ_T0016356.1 MGP_C57BL6NJ_G0014401.1 mouse_genomes_project 7 123648160 123648490 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011138.1 MGP_C57BL6NJ_G0009223.1 mouse_genomes_project 7 65443941 65444021 - Mir344d-2 miRNA miRNA MGP_C57BL6NJ_T0085319.1 MGP_C57BL6NJ_G0032918.1 mouse_genomes_project 7 87159838 87196177 - MGP_C57BL6NJ_P0085319 Btbd1 protein_coding protein_coding MGP_C57BL6NJ_T0082332.1 MGP_C57BL6NJ_G0032167.1 mouse_genomes_project 7 15402253 15406669 + MGP_C57BL6NJ_P0082332 Ptgir protein_coding protein_coding MGP_C57BL6NJ_T0082333.1 MGP_C57BL6NJ_G0032167.1 mouse_genomes_project 7 15402277 15406664 + MGP_C57BL6NJ_P0082333 Ptgir protein_coding protein_coding MGP_C57BL6NJ_T0087021.1 MGP_C57BL6NJ_G0033479.1 mouse_genomes_project 7 135916760 135938205 - MGP_C57BL6NJ_P0087021 Eif3c protein_coding protein_coding MGP_C57BL6NJ_T0087022.1 MGP_C57BL6NJ_G0033479.1 mouse_genomes_project 7 135932885 135938152 - MGP_C57BL6NJ_P0087022 Eif3c protein_coding protein_coding MGP_C57BL6NJ_T0087023.1 MGP_C57BL6NJ_G0033479.1 mouse_genomes_project 7 135933300 135937998 - MGP_C57BL6NJ_P0087023 Eif3c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082049.1 MGP_C57BL6NJ_G0032074.1 mouse_genomes_project 7 8392045 8429880 + MGP_C57BL6NJ_P0082049 Nlrp4b protein_coding protein_coding MGP_C57BL6NJ_T0082050.1 MGP_C57BL6NJ_G0032074.1 mouse_genomes_project 7 8392073 8429890 + MGP_C57BL6NJ_P0082050 Nlrp4b protein_coding protein_coding MGP_C57BL6NJ_T0082051.1 MGP_C57BL6NJ_G0032074.1 mouse_genomes_project 7 8414695 8426857 + MGP_C57BL6NJ_P0082051 Nlrp4b protein_coding protein_coding MGP_C57BL6NJ_T0083859.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38799451 38807285 - MGP_C57BL6NJ_P0083859 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083860.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38806402 39118907 - MGP_C57BL6NJ_P0083860 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083861.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38806407 39119245 - MGP_C57BL6NJ_P0083861 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083862.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38806420 39120263 - MGP_C57BL6NJ_P0083862 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083863.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38806475 39122178 - MGP_C57BL6NJ_P0083863 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083864.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38896385 39120065 - MGP_C57BL6NJ_P0083864 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083865.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 38896515 39122944 - MGP_C57BL6NJ_P0083865 Zfp536 protein_coding protein_coding MGP_C57BL6NJ_T0083866.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 39054736 39122880 - Zfp536 protein_coding processed_transcript MGP_C57BL6NJ_T0083867.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 39060970 39122865 - Zfp536 protein_coding retained_intron MGP_C57BL6NJ_T0083868.1 MGP_C57BL6NJ_G0032562.1 mouse_genomes_project 7 39121683 39122886 - Zfp536 protein_coding retained_intron MGP_C57BL6NJ_T0086208.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113263907 113285520 + Dnhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0086214.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113263924 113313900 + Dnhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0086218.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113276318 113349311 + MGP_C57BL6NJ_P0086218 Dnhd1 protein_coding protein_coding MGP_C57BL6NJ_T0086219.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113276699 113349279 + MGP_C57BL6NJ_P0086219 Dnhd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086220.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113303436 113307661 + Dnhd1 protein_coding retained_intron MGP_C57BL6NJ_T0086221.1 MGP_C57BL6NJ_G0033251.1 mouse_genomes_project 7 113307484 113313893 + MGP_C57BL6NJ_P0086221 Dnhd1 protein_coding protein_coding MGP_C57BL6NJ_T0085530.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102692195 103461206 + MGP_C57BL6NJ_P0085530 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085531.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102727157 102963911 + Tenm4 protein_coding retained_intron MGP_C57BL6NJ_T0085532.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102727207 103037834 + Tenm4 protein_coding processed_transcript MGP_C57BL6NJ_T0085533.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102727637 102965739 + Tenm4 protein_coding retained_intron MGP_C57BL6NJ_T0085534.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102727645 103096525 + MGP_C57BL6NJ_P0085534 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085535.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102728128 103463730 + MGP_C57BL6NJ_P0085535 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085536.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 102729162 103461191 + MGP_C57BL6NJ_P0085536 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085537.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 103064619 103096525 + MGP_C57BL6NJ_P0085537 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085538.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 103190167 103281634 + Tenm4 protein_coding retained_intron MGP_C57BL6NJ_T0085539.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 103329450 103350431 + MGP_C57BL6NJ_P0085539 Tenm4 protein_coding protein_coding MGP_C57BL6NJ_T0085540.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 103349338 103351268 + Tenm4 protein_coding processed_transcript MGP_C57BL6NJ_T0085541.1 MGP_C57BL6NJ_G0033000.1 mouse_genomes_project 7 103349338 103396244 + Tenm4 protein_coding retained_intron MGP_C57BL6NJ_T0082001.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3590856 3606387 - MGP_C57BL6NJ_P0082001 Zfp583 protein_coding protein_coding MGP_C57BL6NJ_T0082002.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3591472 3605536 - MGP_C57BL6NJ_P0082002 Zfp583 protein_coding protein_coding MGP_C57BL6NJ_T0082003.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3591501 3604365 - MGP_C57BL6NJ_P0082003 Zfp583 protein_coding protein_coding MGP_C57BL6NJ_T0082004.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3592825 3606352 - Zfp583 protein_coding processed_transcript MGP_C57BL6NJ_T0082005.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3598309 3606306 - Zfp583 protein_coding processed_transcript MGP_C57BL6NJ_T0082006.1 MGP_C57BL6NJ_G0032044.1 mouse_genomes_project 7 3598763 3606380 - MGP_C57BL6NJ_P0082006 Zfp583 protein_coding protein_coding MGP_C57BL6NJ_T0099152.1 MGP_C57BL6NJ_G0037216.1 mouse_genomes_project 7 103415927 103416020 - Gm25712 rRNA rRNA MGP_C57BL6NJ_T0103354.1 MGP_C57BL6NJ_G0041147.1 mouse_genomes_project 7 12650496 12651196 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008987.1 MGP_C57BL6NJ_G0007258.1 mouse_genomes_project 7 15355777 15359317 - 9330104G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0008988.1 MGP_C57BL6NJ_G0007258.1 mouse_genomes_project 7 15357374 15359317 - 9330104G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0085900.1 MGP_C57BL6NJ_G0033076.1 mouse_genomes_project 7 108866520 108871933 - MGP_C57BL6NJ_P0085900 Tomt protein_coding protein_coding MGP_C57BL6NJ_T0085902.1 MGP_C57BL6NJ_G0033076.1 mouse_genomes_project 7 108867965 108874507 - MGP_C57BL6NJ_P0085902 Tomt protein_coding protein_coding MGP_C57BL6NJ_T0016194.1 MGP_C57BL6NJ_G0014239.1 mouse_genomes_project 7 31595299 31595402 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099148.1 MGP_C57BL6NJ_G0037212.1 mouse_genomes_project 7 70514798 70514888 - Gm23957 rRNA rRNA MGP_C57BL6NJ_T0082064.1 MGP_C57BL6NJ_G0032086.1 mouse_genomes_project 7 10312954 10313911 - MGP_C57BL6NJ_P0082064 Vmn1r84 protein_coding protein_coding MGP_C57BL6NJ_T0087934.1 MGP_C57BL6NJ_G0033661.1 mouse_genomes_project 7 150572279 150576529 - MGP_C57BL6NJ_P0087934 Sprn protein_coding protein_coding MGP_C57BL6NJ_T0087935.1 MGP_C57BL6NJ_G0033661.1 mouse_genomes_project 7 150572615 150575193 - Sprn protein_coding processed_transcript MGP_C57BL6NJ_T0084887.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71418142 71572481 - MGP_C57BL6NJ_P0084887 Mef2a protein_coding protein_coding MGP_C57BL6NJ_T0084888.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71418897 71572481 - MGP_C57BL6NJ_P0084888 Mef2a protein_coding protein_coding MGP_C57BL6NJ_T0084889.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71419063 71513510 - MGP_C57BL6NJ_P0084889 Mef2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084890.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71421018 71572481 - MGP_C57BL6NJ_P0084890 Mef2a protein_coding protein_coding MGP_C57BL6NJ_T0084891.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71421126 71572481 - MGP_C57BL6NJ_P0084891 Mef2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084892.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71421186 71572481 - MGP_C57BL6NJ_P0084892 Mef2a protein_coding protein_coding MGP_C57BL6NJ_T0084893.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71438788 71572481 - MGP_C57BL6NJ_P0084893 Mef2a protein_coding protein_coding MGP_C57BL6NJ_T0084894.1 MGP_C57BL6NJ_G0032841.1 mouse_genomes_project 7 71547990 71572450 - Mef2a protein_coding processed_transcript MGP_C57BL6NJ_T0087024.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135942858 135959185 - MGP_C57BL6NJ_P0087024 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087025.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943051 135956615 - MGP_C57BL6NJ_P0087025 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087026.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943051 135957648 - MGP_C57BL6NJ_P0087026 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087027.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943737 135956558 - MGP_C57BL6NJ_P0087027 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087028.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943741 135948482 - Cln3 protein_coding processed_transcript MGP_C57BL6NJ_T0087029.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943759 135944380 - Cln3 protein_coding processed_transcript MGP_C57BL6NJ_T0087030.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135943773 135951241 - Cln3 protein_coding retained_intron MGP_C57BL6NJ_T0087031.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135951736 135957675 - Cln3 protein_coding retained_intron MGP_C57BL6NJ_T0087032.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135952588 135956594 - Cln3 protein_coding processed_transcript MGP_C57BL6NJ_T0087033.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135952624 135956730 - MGP_C57BL6NJ_P0087033 Cln3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087034.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135952640 135957588 - MGP_C57BL6NJ_P0087034 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087035.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135952786 135956891 - MGP_C57BL6NJ_P0087035 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087036.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135953637 135956482 - Cln3 protein_coding retained_intron MGP_C57BL6NJ_T0087037.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135954198 135956684 - Cln3 protein_coding retained_intron MGP_C57BL6NJ_T0087038.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135954880 135956710 - Cln3 protein_coding processed_transcript MGP_C57BL6NJ_T0087039.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135955025 135956934 - MGP_C57BL6NJ_P0087039 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087040.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135955028 135957946 - MGP_C57BL6NJ_P0087040 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087041.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135955082 135956922 - MGP_C57BL6NJ_P0087041 Cln3 protein_coding protein_coding MGP_C57BL6NJ_T0087042.1 MGP_C57BL6NJ_G0033480.1 mouse_genomes_project 7 135956689 135958154 - Cln3 protein_coding processed_transcript MGP_C57BL6NJ_T0016126.1 MGP_C57BL6NJ_G0014171.1 mouse_genomes_project 7 3155594 3156543 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083027.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27142307 27206464 + MGP_C57BL6NJ_P0083027 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083028.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27144101 27205088 + MGP_C57BL6NJ_P0083028 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083029.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27144723 27186383 + MGP_C57BL6NJ_P0083029 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083030.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27144813 27195449 + MGP_C57BL6NJ_P0083030 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083031.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27145901 27171642 + Akt2 protein_coding processed_transcript MGP_C57BL6NJ_T0083032.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27149186 27173529 + MGP_C57BL6NJ_P0083032 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083033.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27158153 27186407 + MGP_C57BL6NJ_P0083033 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083034.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27158173 27205086 + MGP_C57BL6NJ_P0083034 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083035.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27158214 27205091 + MGP_C57BL6NJ_P0083035 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083036.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27160104 27195429 + MGP_C57BL6NJ_P0083036 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083037.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27160360 27173582 + MGP_C57BL6NJ_P0083037 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083038.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27161018 27203656 + MGP_C57BL6NJ_P0083038 Akt2 protein_coding protein_coding MGP_C57BL6NJ_T0083039.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27186062 27200098 + Akt2 protein_coding retained_intron MGP_C57BL6NJ_T0083040.1 MGP_C57BL6NJ_G0032367.1 mouse_genomes_project 7 27201427 27202929 + Akt2 protein_coding retained_intron MGP_C57BL6NJ_T0103526.1 MGP_C57BL6NJ_G0041318.1 mouse_genomes_project 7 110222359 110223301 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083214.1 MGP_C57BL6NJ_G0032417.1 mouse_genomes_project 7 28741281 28754001 - MGP_C57BL6NJ_P0083214 Eif3k protein_coding protein_coding MGP_C57BL6NJ_T0101868.1 MGP_C57BL6NJ_G0039914.1 mouse_genomes_project 7 63139765 63139834 - snoRNA snoRNA MGP_C57BL6NJ_T0011145.1 MGP_C57BL6NJ_G0009230.1 mouse_genomes_project 7 65507253 65507313 - Mir344h-2 miRNA miRNA MGP_C57BL6NJ_T0103332.1 MGP_C57BL6NJ_G0041125.1 mouse_genomes_project 7 9806274 9807239 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005431.1 MGP_C57BL6NJ_G0004606.1 mouse_genomes_project 7 119141130 119141997 + Gm16336 antisense antisense MGP_C57BL6NJ_T0084250.1 MGP_C57BL6NJ_G0032678.1 mouse_genomes_project 7 47526546 47555179 - MGP_C57BL6NJ_P0084250 Prr12 protein_coding protein_coding MGP_C57BL6NJ_T0016232.1 MGP_C57BL6NJ_G0014277.1 mouse_genomes_project 7 42676403 42684389 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009093.1 MGP_C57BL6NJ_G0007339.1 mouse_genomes_project 7 75816930 75856749 + Gm29295 lincRNA lincRNA MGP_C57BL6NJ_T0087820.1 MGP_C57BL6NJ_G0033635.1 mouse_genomes_project 7 148515681 148708000 - MGP_C57BL6NJ_P0087820 Tcerg1l protein_coding protein_coding MGP_C57BL6NJ_T0087821.1 MGP_C57BL6NJ_G0033635.1 mouse_genomes_project 7 148516424 148576453 - Tcerg1l protein_coding processed_transcript MGP_C57BL6NJ_T0087822.1 MGP_C57BL6NJ_G0033635.1 mouse_genomes_project 7 148565164 148708002 - Tcerg1l protein_coding retained_intron MGP_C57BL6NJ_T0084407.1 MGP_C57BL6NJ_G0032722.1 mouse_genomes_project 7 48240565 48251097 + MGP_C57BL6NJ_P0084407 Ntn5 protein_coding protein_coding MGP_C57BL6NJ_T0084408.1 MGP_C57BL6NJ_G0032722.1 mouse_genomes_project 7 48240959 48251100 + MGP_C57BL6NJ_P0084408 Ntn5 protein_coding protein_coding MGP_C57BL6NJ_T0084409.1 MGP_C57BL6NJ_G0032722.1 mouse_genomes_project 7 48240972 48250971 + MGP_C57BL6NJ_P0084409 Ntn5 protein_coding protein_coding MGP_C57BL6NJ_T0002356.1 MGP_C57BL6NJ_G0002246.1 mouse_genomes_project 7 38844313 38845106 - TEC TEC MGP_C57BL6NJ_T0100586.1 MGP_C57BL6NJ_G0038632.1 mouse_genomes_project 7 50151078 50151170 + Gm25326 snRNA snRNA MGP_C57BL6NJ_T0084254.1 MGP_C57BL6NJ_G0032681.1 mouse_genomes_project 7 47585773 47595156 - MGP_C57BL6NJ_P0084254 Rcn3 protein_coding protein_coding MGP_C57BL6NJ_T0103512.1 MGP_C57BL6NJ_G0041304.1 mouse_genomes_project 7 91773029 91774633 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016137.1 MGP_C57BL6NJ_G0014182.1 mouse_genomes_project 7 11635099 11677038 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086785.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130050111 130132398 + MGP_C57BL6NJ_P0086785 Otoa protein_coding protein_coding MGP_C57BL6NJ_T0086786.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130050197 130068047 + MGP_C57BL6NJ_P0086786 Otoa protein_coding protein_coding MGP_C57BL6NJ_T0086787.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130050213 130058385 + MGP_C57BL6NJ_P0086787 Otoa protein_coding protein_coding MGP_C57BL6NJ_T0086788.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130050213 130058367 + MGP_C57BL6NJ_P0086788 Otoa protein_coding protein_coding MGP_C57BL6NJ_T0086789.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130083730 130130114 + Otoa protein_coding retained_intron MGP_C57BL6NJ_T0086790.1 MGP_C57BL6NJ_G0033435.1 mouse_genomes_project 7 130083735 130132392 + Otoa protein_coding processed_transcript MGP_C57BL6NJ_T0016254.1 MGP_C57BL6NJ_G0014299.1 mouse_genomes_project 7 44825054 44825590 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016336.1 MGP_C57BL6NJ_G0014381.1 mouse_genomes_project 7 105535029 105535393 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087254.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136632724 136637065 - MGP_C57BL6NJ_P0087254 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087255.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136633060 136637003 - MGP_C57BL6NJ_P0087255 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087256.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136633087 136637014 - Cd2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0087257.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136633089 136637052 - MGP_C57BL6NJ_P0087257 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087258.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136634722 136636940 - MGP_C57BL6NJ_P0087258 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087259.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136635526 136636509 - MGP_C57BL6NJ_P0087259 Cd2bp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087260.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136635591 136637007 - MGP_C57BL6NJ_P0087260 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087261.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136635686 136637031 - MGP_C57BL6NJ_P0087261 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0087262.1 MGP_C57BL6NJ_G0033517.1 mouse_genomes_project 7 136636156 136637115 - MGP_C57BL6NJ_P0087262 Cd2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0083840.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36862717 36936406 - MGP_C57BL6NJ_P0083840 Dpy19l3 protein_coding protein_coding MGP_C57BL6NJ_T0083841.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36868277 36885681 - MGP_C57BL6NJ_P0083841 Dpy19l3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083842.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36884812 36886154 - Dpy19l3 protein_coding retained_intron MGP_C57BL6NJ_T0083843.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36885221 36886240 - Dpy19l3 protein_coding retained_intron MGP_C57BL6NJ_T0083844.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36891748 36908653 - MGP_C57BL6NJ_P0083844 Dpy19l3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083845.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36893556 36902585 - Dpy19l3 protein_coding retained_intron MGP_C57BL6NJ_T0083846.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36898552 36904377 - Dpy19l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083847.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36904391 36908697 - Dpy19l3 protein_coding retained_intron MGP_C57BL6NJ_T0083848.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36908598 36936351 - Dpy19l3 protein_coding processed_transcript MGP_C57BL6NJ_T0083849.1 MGP_C57BL6NJ_G0032559.1 mouse_genomes_project 7 36933263 36936307 - Dpy19l3 protein_coding retained_intron MGP_C57BL6NJ_T0103494.1 MGP_C57BL6NJ_G0041286.1 mouse_genomes_project 7 90719778 90722096 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103524.1 MGP_C57BL6NJ_G0041316.1 mouse_genomes_project 7 109997796 109998690 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086044.1 MGP_C57BL6NJ_G0033155.1 mouse_genomes_project 7 110836916 110837843 - MGP_C57BL6NJ_P0086044 Olfr624 protein_coding protein_coding MGP_C57BL6NJ_T0103518.1 MGP_C57BL6NJ_G0041310.1 mouse_genomes_project 7 92141181 92141809 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086357.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632608 117637244 + MGP_C57BL6NJ_P0086357 Rpl27a protein_coding protein_coding MGP_C57BL6NJ_T0086358.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632657 117634588 + Rpl27a protein_coding retained_intron MGP_C57BL6NJ_T0086359.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632660 117633641 + Rpl27a protein_coding retained_intron MGP_C57BL6NJ_T0086360.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632674 117636643 + Rpl27a protein_coding retained_intron MGP_C57BL6NJ_T0086361.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632681 117634059 + MGP_C57BL6NJ_P0086361 Rpl27a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086362.1 MGP_C57BL6NJ_G0033336.1 mouse_genomes_project 7 117632731 117633400 + Rpl27a protein_coding retained_intron MGP_C57BL6NJ_T0009065.1 MGP_C57BL6NJ_G0007320.1 mouse_genomes_project 7 64843882 65052653 - lincRNA lincRNA MGP_C57BL6NJ_T0009066.1 MGP_C57BL6NJ_G0007320.1 mouse_genomes_project 7 65006077 65052661 - lincRNA lincRNA MGP_C57BL6NJ_T0084098.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894664 46898337 + MGP_C57BL6NJ_P0084098 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084099.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894690 46896863 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084100.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894706 46898334 + MGP_C57BL6NJ_P0084100 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084101.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894707 46898336 + MGP_C57BL6NJ_P0084101 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084102.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894720 46898221 + MGP_C57BL6NJ_P0084102 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084103.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894723 46898347 + MGP_C57BL6NJ_P0084103 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084104.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894727 46895997 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084105.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894729 46898333 + MGP_C57BL6NJ_P0084105 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084106.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894734 46896119 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084107.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894756 46898306 + MGP_C57BL6NJ_P0084107 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084108.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894760 46896034 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084109.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894769 46897861 + MGP_C57BL6NJ_P0084109 Josd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084110.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894773 46896533 + Josd2 protein_coding processed_transcript MGP_C57BL6NJ_T0084111.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894773 46898336 + MGP_C57BL6NJ_P0084111 Josd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084112.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894778 46898328 + MGP_C57BL6NJ_P0084112 Josd2 protein_coding protein_coding MGP_C57BL6NJ_T0084113.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894835 46898337 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084114.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46894866 46895655 + Josd2 protein_coding retained_intron MGP_C57BL6NJ_T0084115.1 MGP_C57BL6NJ_G0032646.1 mouse_genomes_project 7 46895510 46898288 + Josd2 protein_coding processed_transcript MGP_C57BL6NJ_T0086729.1 MGP_C57BL6NJ_G0033416.1 mouse_genomes_project 7 128756827 128945436 - MGP_C57BL6NJ_P0086729 Dnah3 protein_coding protein_coding MGP_C57BL6NJ_T0086730.1 MGP_C57BL6NJ_G0033416.1 mouse_genomes_project 7 128756827 128945436 - MGP_C57BL6NJ_P0086730 Dnah3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083085.1 MGP_C57BL6NJ_G0032385.1 mouse_genomes_project 7 27922474 27924898 + MGP_C57BL6NJ_P0083085 Eid2b protein_coding protein_coding MGP_C57BL6NJ_T0083698.1 MGP_C57BL6NJ_G0032531.1 mouse_genomes_project 7 34865626 34867665 - MGP_C57BL6NJ_P0083698 Scgb2b26 protein_coding protein_coding MGP_C57BL6NJ_T0083431.1 MGP_C57BL6NJ_G0032471.1 mouse_genomes_project 7 30396038 30410267 - Kirrel2 protein_coding retained_intron MGP_C57BL6NJ_T0083432.1 MGP_C57BL6NJ_G0032471.1 mouse_genomes_project 7 30396040 30410130 - MGP_C57BL6NJ_P0083432 Kirrel2 protein_coding protein_coding MGP_C57BL6NJ_T0083433.1 MGP_C57BL6NJ_G0032471.1 mouse_genomes_project 7 30396575 30401342 - MGP_C57BL6NJ_P0083433 Kirrel2 protein_coding protein_coding MGP_C57BL6NJ_T0083434.1 MGP_C57BL6NJ_G0032471.1 mouse_genomes_project 7 30396623 30409464 - MGP_C57BL6NJ_P0083434 Kirrel2 protein_coding protein_coding MGP_C57BL6NJ_T0083435.1 MGP_C57BL6NJ_G0032471.1 mouse_genomes_project 7 30409598 30410305 - Kirrel2 protein_coding processed_transcript MGP_C57BL6NJ_T0099510.1 MGP_C57BL6NJ_G0037563.1 mouse_genomes_project 7 36104222 36105361 - Gm44836 sense_intronic sense_intronic MGP_C57BL6NJ_T0086048.1 MGP_C57BL6NJ_G0033159.1 mouse_genomes_project 7 110949447 110950513 - MGP_C57BL6NJ_P0086048 Olfr630 protein_coding protein_coding MGP_C57BL6NJ_T0005352.1 MGP_C57BL6NJ_G0004552.1 mouse_genomes_project 7 31220115 31223314 + G630030J09Rik antisense antisense MGP_C57BL6NJ_T0005797.1 MGP_C57BL6NJ_G0004877.1 mouse_genomes_project 7 69970741 69971728 - Gm20684 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0088440.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155249327 155332968 - MGP_C57BL6NJ_P0088440 Ppfia1 protein_coding protein_coding MGP_C57BL6NJ_T0088441.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155249547 155331776 - MGP_C57BL6NJ_P0088441 Ppfia1 protein_coding protein_coding MGP_C57BL6NJ_T0088442.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155255711 155262276 - Ppfia1 protein_coding processed_transcript MGP_C57BL6NJ_T0088443.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155274292 155279367 - Ppfia1 protein_coding retained_intron MGP_C57BL6NJ_T0088444.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155285016 155287778 - Ppfia1 protein_coding retained_intron MGP_C57BL6NJ_T0088445.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155298105 155331601 - MGP_C57BL6NJ_P0088445 Ppfia1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088446.1 MGP_C57BL6NJ_G0033781.1 mouse_genomes_project 7 155299130 155303198 - Ppfia1 protein_coding retained_intron MGP_C57BL6NJ_T0082854.1 MGP_C57BL6NJ_G0032323.1 mouse_genomes_project 7 25002361 25009617 + MGP_C57BL6NJ_P0082854 B9d2 protein_coding protein_coding MGP_C57BL6NJ_T0082855.1 MGP_C57BL6NJ_G0032323.1 mouse_genomes_project 7 25002419 25005234 + MGP_C57BL6NJ_P0082855 B9d2 protein_coding protein_coding MGP_C57BL6NJ_T0082856.1 MGP_C57BL6NJ_G0032323.1 mouse_genomes_project 7 25002437 25005005 + MGP_C57BL6NJ_P0082856 B9d2 protein_coding protein_coding MGP_C57BL6NJ_T0082857.1 MGP_C57BL6NJ_G0032323.1 mouse_genomes_project 7 25002739 25009617 + MGP_C57BL6NJ_P0082857 B9d2 protein_coding protein_coding MGP_C57BL6NJ_T0081988.1 MGP_C57BL6NJ_G0032040.1 mouse_genomes_project 7 3438496 3467162 + MGP_C57BL6NJ_P0081988 Galp protein_coding protein_coding MGP_C57BL6NJ_T0081989.1 MGP_C57BL6NJ_G0032040.1 mouse_genomes_project 7 3451599 3462391 + Galp protein_coding processed_transcript MGP_C57BL6NJ_T0009181.1 MGP_C57BL6NJ_G0007397.1 mouse_genomes_project 7 123293732 123296960 - Gm45017 lincRNA lincRNA MGP_C57BL6NJ_T0082446.1 MGP_C57BL6NJ_G0032210.1 mouse_genomes_project 7 18005053 18014916 - MGP_C57BL6NJ_P0082446 Gipr protein_coding protein_coding MGP_C57BL6NJ_T0082447.1 MGP_C57BL6NJ_G0032210.1 mouse_genomes_project 7 18005056 18014916 - Gipr protein_coding retained_intron MGP_C57BL6NJ_T0082448.1 MGP_C57BL6NJ_G0032210.1 mouse_genomes_project 7 18011078 18014916 - MGP_C57BL6NJ_P0082448 Gipr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082449.1 MGP_C57BL6NJ_G0032210.1 mouse_genomes_project 7 18011245 18013883 - Gipr protein_coding retained_intron MGP_C57BL6NJ_T0016197.1 MGP_C57BL6NJ_G0014242.1 mouse_genomes_project 7 32109091 32110097 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009005.1 MGP_C57BL6NJ_G0007273.1 mouse_genomes_project 7 29712027 29717968 + Gm26554 lincRNA lincRNA MGP_C57BL6NJ_T0081675.1 MGP_C57BL6NJ_G0031961.1 mouse_genomes_project 7 307667 340295 + MGP_C57BL6NJ_P0081675 Cacng8 protein_coding protein_coding MGP_C57BL6NJ_T0081676.1 MGP_C57BL6NJ_G0031961.1 mouse_genomes_project 7 311093 340252 + MGP_C57BL6NJ_P0081676 Cacng8 protein_coding protein_coding MGP_C57BL6NJ_T0081677.1 MGP_C57BL6NJ_G0031961.1 mouse_genomes_project 7 311394 311929 + MGP_C57BL6NJ_P0081677 Cacng8 protein_coding protein_coding MGP_C57BL6NJ_T0008993.1 MGP_C57BL6NJ_G0007263.1 mouse_genomes_project 7 18697813 18702606 + Gm26600 lincRNA lincRNA MGP_C57BL6NJ_T0011086.1 MGP_C57BL6NJ_G0009171.1 mouse_genomes_project 7 1389282 1389378 - Gm24605 miRNA miRNA MGP_C57BL6NJ_T0009106.1 MGP_C57BL6NJ_G0007351.1 mouse_genomes_project 7 77831789 77871362 - Gm30075 lincRNA lincRNA MGP_C57BL6NJ_T0009104.1 MGP_C57BL6NJ_G0007350.1 mouse_genomes_project 7 77814754 77818025 + Gm44670 lincRNA lincRNA MGP_C57BL6NJ_T0009105.1 MGP_C57BL6NJ_G0007350.1 mouse_genomes_project 7 77814813 77818457 + Gm44670 lincRNA lincRNA MGP_C57BL6NJ_T0082020.1 MGP_C57BL6NJ_G0032055.1 mouse_genomes_project 7 3790252 3791292 - MGP_C57BL6NJ_P0082020 Olfr1348 protein_coding protein_coding MGP_C57BL6NJ_T0083641.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31136225 31144793 - MGP_C57BL6NJ_P0083641 Fxyd3 protein_coding protein_coding MGP_C57BL6NJ_T0083642.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138625 31140379 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083643.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138627 31144744 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083644.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138627 31139128 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083645.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138627 31139550 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083646.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138628 31144758 - MGP_C57BL6NJ_P0083646 Fxyd3 protein_coding protein_coding MGP_C57BL6NJ_T0083647.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138629 31140141 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083648.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31138974 31143041 - MGP_C57BL6NJ_P0083648 Fxyd3 protein_coding protein_coding MGP_C57BL6NJ_T0083649.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31139629 31144743 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083650.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31140105 31144734 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0083651.1 MGP_C57BL6NJ_G0032510.1 mouse_genomes_project 7 31141108 31144752 - Fxyd3 protein_coding retained_intron MGP_C57BL6NJ_T0005385.1 MGP_C57BL6NJ_G0004575.1 mouse_genomes_project 7 70231780 70297032 - Gm26827 antisense antisense MGP_C57BL6NJ_T0085730.1 MGP_C57BL6NJ_G0033046.1 mouse_genomes_project 7 106942477 106944566 + MGP_C57BL6NJ_P0085730 Lipt2 protein_coding protein_coding MGP_C57BL6NJ_T0002379.1 MGP_C57BL6NJ_G0002269.1 mouse_genomes_project 7 59372613 59373770 - TEC TEC MGP_C57BL6NJ_T0087809.1 MGP_C57BL6NJ_G0033632.1 mouse_genomes_project 7 147443269 147568339 - MGP_C57BL6NJ_P0087809 Ebf3 protein_coding protein_coding MGP_C57BL6NJ_T0087810.1 MGP_C57BL6NJ_G0033632.1 mouse_genomes_project 7 147443269 147568339 - MGP_C57BL6NJ_P0087810 Ebf3 protein_coding protein_coding MGP_C57BL6NJ_T0087811.1 MGP_C57BL6NJ_G0033632.1 mouse_genomes_project 7 147443269 147568339 - MGP_C57BL6NJ_P0087811 Ebf3 protein_coding protein_coding MGP_C57BL6NJ_T0087812.1 MGP_C57BL6NJ_G0033632.1 mouse_genomes_project 7 147444294 147568308 - MGP_C57BL6NJ_P0087812 Ebf3 protein_coding protein_coding MGP_C57BL6NJ_T0084576.1 MGP_C57BL6NJ_G0032768.1 mouse_genomes_project 7 50344208 50357588 - MGP_C57BL6NJ_P0084576 Mrgpra3 protein_coding protein_coding MGP_C57BL6NJ_T0085591.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104188737 104191831 + Rsf1 protein_coding retained_intron MGP_C57BL6NJ_T0085592.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104188745 104305525 + Rsf1 protein_coding retained_intron MGP_C57BL6NJ_T0085593.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104188745 104311883 + MGP_C57BL6NJ_P0085593 Rsf1 protein_coding protein_coding MGP_C57BL6NJ_T0085594.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104188755 104255541 + MGP_C57BL6NJ_P0085594 Rsf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085595.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104275422 104279057 + Rsf1 protein_coding retained_intron MGP_C57BL6NJ_T0085596.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104280694 104305713 + MGP_C57BL6NJ_P0085596 Rsf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085597.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104287634 104295287 + Rsf1 protein_coding retained_intron MGP_C57BL6NJ_T0085598.1 MGP_C57BL6NJ_G0033011.1 mouse_genomes_project 7 104287989 104299883 + MGP_C57BL6NJ_P0085598 Rsf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086474.1 MGP_C57BL6NJ_G0033363.1 mouse_genomes_project 7 120675579 120726195 + MGP_C57BL6NJ_P0086474 Micalcl protein_coding protein_coding MGP_C57BL6NJ_T0086475.1 MGP_C57BL6NJ_G0033363.1 mouse_genomes_project 7 120687629 120708626 + MGP_C57BL6NJ_P0086475 Micalcl protein_coding protein_coding MGP_C57BL6NJ_T0086476.1 MGP_C57BL6NJ_G0033363.1 mouse_genomes_project 7 120688152 120726310 + MGP_C57BL6NJ_P0086476 Micalcl protein_coding protein_coding MGP_C57BL6NJ_T0086477.1 MGP_C57BL6NJ_G0033363.1 mouse_genomes_project 7 120694427 120726310 + MGP_C57BL6NJ_P0086477 Micalcl protein_coding protein_coding MGP_C57BL6NJ_T0086478.1 MGP_C57BL6NJ_G0033363.1 mouse_genomes_project 7 120720363 120726261 + Micalcl protein_coding retained_intron MGP_C57BL6NJ_T0084633.1 MGP_C57BL6NJ_G0032787.1 mouse_genomes_project 7 53619524 53620865 + MGP_C57BL6NJ_P0084633 4933405O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0087405.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137300075 137324789 + MGP_C57BL6NJ_P0087405 Setd1a protein_coding protein_coding MGP_C57BL6NJ_T0087406.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137300554 137307480 + MGP_C57BL6NJ_P0087406 Setd1a protein_coding protein_coding MGP_C57BL6NJ_T0087407.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137300794 137307107 + MGP_C57BL6NJ_P0087407 Setd1a protein_coding protein_coding MGP_C57BL6NJ_T0087408.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137300794 137324782 + MGP_C57BL6NJ_P0087408 Setd1a protein_coding protein_coding MGP_C57BL6NJ_T0087409.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137301100 137301971 + MGP_C57BL6NJ_P0087409 Setd1a protein_coding protein_coding MGP_C57BL6NJ_T0087410.1 MGP_C57BL6NJ_G0033546.1 mouse_genomes_project 7 137301982 137305309 + Setd1a protein_coding processed_transcript MGP_C57BL6NJ_T0086817.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131134285 131137967 - Ndufab1 protein_coding retained_intron MGP_C57BL6NJ_T0086818.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131136997 131139272 - Ndufab1 protein_coding retained_intron MGP_C57BL6NJ_T0086819.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131137003 131148034 - MGP_C57BL6NJ_P0086819 Ndufab1 protein_coding protein_coding MGP_C57BL6NJ_T0086820.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131137012 131139962 - Ndufab1 protein_coding retained_intron MGP_C57BL6NJ_T0086821.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131137705 131147947 - MGP_C57BL6NJ_P0086821 Ndufab1 protein_coding protein_coding MGP_C57BL6NJ_T0086822.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131139304 131147918 - Ndufab1 protein_coding retained_intron MGP_C57BL6NJ_T0086823.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131140211 131147527 - Ndufab1 protein_coding processed_transcript MGP_C57BL6NJ_T0086824.1 MGP_C57BL6NJ_G0033444.1 mouse_genomes_project 7 131142642 131148040 - Ndufab1 protein_coding retained_intron MGP_C57BL6NJ_T0086111.1 MGP_C57BL6NJ_G0033202.1 mouse_genomes_project 7 111966395 111967421 + MGP_C57BL6NJ_P0086111 Olfr654 protein_coding protein_coding MGP_C57BL6NJ_T0009095.1 MGP_C57BL6NJ_G0007341.1 mouse_genomes_project 7 76430401 76466120 + 4930441H08Rik lincRNA lincRNA MGP_C57BL6NJ_T0002365.1 MGP_C57BL6NJ_G0002255.1 mouse_genomes_project 7 45953329 45953763 + TEC TEC MGP_C57BL6NJ_T0086025.1 MGP_C57BL6NJ_G0033136.1 mouse_genomes_project 7 110448641 110449586 - MGP_C57BL6NJ_P0086025 protein_coding protein_coding MGP_C57BL6NJ_T0082239.1 MGP_C57BL6NJ_G0032145.1 mouse_genomes_project 7 14541861 14574697 + MGP_C57BL6NJ_P0082239 Slc8a2 protein_coding protein_coding MGP_C57BL6NJ_T0084634.1 MGP_C57BL6NJ_G0032788.1 mouse_genomes_project 7 54612202 54703059 + MGP_C57BL6NJ_P0084634 Ano5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084635.1 MGP_C57BL6NJ_G0032788.1 mouse_genomes_project 7 54612947 54707919 + MGP_C57BL6NJ_P0084635 Ano5 protein_coding protein_coding MGP_C57BL6NJ_T0016218.1 MGP_C57BL6NJ_G0014263.1 mouse_genomes_project 7 34913720 34913787 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087973.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151331367 151338141 + MGP_C57BL6NJ_P0087973 Ric8a protein_coding protein_coding MGP_C57BL6NJ_T0087974.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151331725 151332753 + Ric8a protein_coding retained_intron MGP_C57BL6NJ_T0087975.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151331832 151332969 + Ric8a protein_coding processed_transcript MGP_C57BL6NJ_T0087976.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151331852 151332953 + Ric8a protein_coding processed_transcript MGP_C57BL6NJ_T0087977.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151332109 151337370 + Ric8a protein_coding retained_intron MGP_C57BL6NJ_T0087978.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151332572 151334145 + Ric8a protein_coding processed_transcript MGP_C57BL6NJ_T0087979.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151335052 151337554 + Ric8a protein_coding retained_intron MGP_C57BL6NJ_T0087980.1 MGP_C57BL6NJ_G0033690.1 mouse_genomes_project 7 151335583 151337030 + Ric8a protein_coding retained_intron MGP_C57BL6NJ_T0082727.1 MGP_C57BL6NJ_G0032295.1 mouse_genomes_project 7 24081438 24086379 + MGP_C57BL6NJ_P0082727 Cd79a protein_coding protein_coding MGP_C57BL6NJ_T0082509.1 MGP_C57BL6NJ_G0032225.1 mouse_genomes_project 7 18299835 18338891 - MGP_C57BL6NJ_P0082509 Mark4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082510.1 MGP_C57BL6NJ_G0032225.1 mouse_genomes_project 7 18300781 18338891 - MGP_C57BL6NJ_P0082510 Mark4 protein_coding protein_coding MGP_C57BL6NJ_T0002361.1 MGP_C57BL6NJ_G0002251.1 mouse_genomes_project 7 42464868 42465361 - TEC TEC MGP_C57BL6NJ_T0084987.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83153689 83560947 - MGP_C57BL6NJ_P0084987 Ntrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084988.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83158883 83170754 - MGP_C57BL6NJ_P0084988 Ntrk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084989.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83170390 83559270 - MGP_C57BL6NJ_P0084989 Ntrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084990.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83170417 83559276 - MGP_C57BL6NJ_P0084990 Ntrk3 protein_coding protein_coding MGP_C57BL6NJ_T0084991.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83225491 83241279 - MGP_C57BL6NJ_P0084991 Ntrk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084992.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83282642 83358096 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0084993.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83282948 83560901 - MGP_C57BL6NJ_P0084993 Ntrk3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084994.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83282950 83336435 - MGP_C57BL6NJ_P0084994 Ntrk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084995.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83336396 83432154 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0084996.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83429655 83560514 - Ntrk3 protein_coding retained_intron MGP_C57BL6NJ_T0084997.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83457937 83553378 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0084998.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83497982 83610824 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0084999.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83498716 83560942 - MGP_C57BL6NJ_P0084999 Ntrk3 protein_coding protein_coding MGP_C57BL6NJ_T0085000.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83559022 83651925 - MGP_C57BL6NJ_P0085000 Ntrk3 protein_coding protein_coding MGP_C57BL6NJ_T0085001.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83559292 83562291 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0085002.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83564658 83718044 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0085003.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83570968 83737833 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0085004.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83578015 83652310 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0085005.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83726526 83737835 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0085006.1 MGP_C57BL6NJ_G0032860.1 mouse_genomes_project 7 83730302 83737835 - Ntrk3 protein_coding processed_transcript MGP_C57BL6NJ_T0011098.1 MGP_C57BL6NJ_G0009183.1 mouse_genomes_project 7 23396566 23396692 - Gm27592 miRNA miRNA MGP_C57BL6NJ_T0087528.1 MGP_C57BL6NJ_G0033572.1 mouse_genomes_project 7 137836689 137841160 + MGP_C57BL6NJ_P0087528 Tgfb1i1 protein_coding protein_coding MGP_C57BL6NJ_T0083273.1 MGP_C57BL6NJ_G0032431.1 mouse_genomes_project 7 29106595 29112362 + MGP_C57BL6NJ_P0083273 Ppp1r14a protein_coding protein_coding MGP_C57BL6NJ_T0016217.1 MGP_C57BL6NJ_G0014262.1 mouse_genomes_project 7 34805227 34806027 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005428.1 MGP_C57BL6NJ_G0004604.1 mouse_genomes_project 7 111623413 111632975 + antisense antisense MGP_C57BL6NJ_T0005429.1 MGP_C57BL6NJ_G0004604.1 mouse_genomes_project 7 111623414 111633146 + antisense antisense MGP_C57BL6NJ_T0084969.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79923511 80119489 - MGP_C57BL6NJ_P0084969 Sv2b protein_coding protein_coding MGP_C57BL6NJ_T0084970.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79923514 80118608 - MGP_C57BL6NJ_P0084970 Sv2b protein_coding protein_coding MGP_C57BL6NJ_T0084971.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79924950 80031737 - MGP_C57BL6NJ_P0084971 Sv2b protein_coding protein_coding MGP_C57BL6NJ_T0084972.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79928558 79967775 - MGP_C57BL6NJ_P0084972 Sv2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084973.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79976740 79981403 - Sv2b protein_coding processed_transcript MGP_C57BL6NJ_T0084974.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 79976740 79981392 - Sv2b protein_coding processed_transcript MGP_C57BL6NJ_T0084975.1 MGP_C57BL6NJ_G0032856.1 mouse_genomes_project 7 80015501 80118538 - Sv2b protein_coding retained_intron MGP_C57BL6NJ_T0009073.1 MGP_C57BL6NJ_G0007326.1 mouse_genomes_project 7 69255870 69256426 - Gm45214 lincRNA lincRNA MGP_C57BL6NJ_T0009074.1 MGP_C57BL6NJ_G0007326.1 mouse_genomes_project 7 69255873 69256486 - Gm45214 lincRNA lincRNA MGP_C57BL6NJ_T0011116.1 MGP_C57BL6NJ_G0009201.1 mouse_genomes_project 7 36135675 36135745 + Gm25033 miRNA miRNA MGP_C57BL6NJ_T0103373.1 MGP_C57BL6NJ_G0041166.1 mouse_genomes_project 7 13339824 13340220 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083377.1 MGP_C57BL6NJ_G0032457.1 mouse_genomes_project 7 30160724 30163011 - MGP_C57BL6NJ_P0083377 Ovol3 protein_coding protein_coding MGP_C57BL6NJ_T0098889.1 MGP_C57BL6NJ_G0036953.1 mouse_genomes_project 7 75795379 75795938 - pseudogene pseudogene MGP_C57BL6NJ_T0084712.1 MGP_C57BL6NJ_G0032803.1 mouse_genomes_project 7 60861052 60966567 - MGP_C57BL6NJ_P0084712 Gabra5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101900.1 MGP_C57BL6NJ_G0039946.1 mouse_genomes_project 7 130006064 130006201 - Gm27991 snoRNA snoRNA MGP_C57BL6NJ_T0016242.1 MGP_C57BL6NJ_G0014287.1 mouse_genomes_project 7 43095327 43096828 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086499.1 MGP_C57BL6NJ_G0033368.1 mouse_genomes_project 7 121687091 121739980 - MGP_C57BL6NJ_P0086499 Btbd10 protein_coding protein_coding MGP_C57BL6NJ_T0086500.1 MGP_C57BL6NJ_G0033368.1 mouse_genomes_project 7 121687102 121717085 - MGP_C57BL6NJ_P0086500 Btbd10 protein_coding protein_coding MGP_C57BL6NJ_T0086501.1 MGP_C57BL6NJ_G0033368.1 mouse_genomes_project 7 121687111 121722535 - MGP_C57BL6NJ_P0086501 Btbd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086502.1 MGP_C57BL6NJ_G0033368.1 mouse_genomes_project 7 121739257 121739977 - Btbd10 protein_coding processed_transcript MGP_C57BL6NJ_T0087466.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470386 137473308 - MGP_C57BL6NJ_P0087466 Prss36 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087467.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470394 137473276 - Prss36 protein_coding processed_transcript MGP_C57BL6NJ_T0087468.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470394 137473236 - Prss36 protein_coding processed_transcript MGP_C57BL6NJ_T0087469.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470394 137485070 - MGP_C57BL6NJ_P0087469 Prss36 protein_coding protein_coding MGP_C57BL6NJ_T0087470.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470394 137485070 - MGP_C57BL6NJ_P0087470 Prss36 protein_coding protein_coding MGP_C57BL6NJ_T0087471.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470555 137473207 - MGP_C57BL6NJ_P0087471 Prss36 protein_coding protein_coding MGP_C57BL6NJ_T0087472.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470658 137473186 - MGP_C57BL6NJ_P0087472 Prss36 protein_coding protein_coding MGP_C57BL6NJ_T0087473.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470716 137473854 - Prss36 protein_coding retained_intron MGP_C57BL6NJ_T0087474.1 MGP_C57BL6NJ_G0033559.1 mouse_genomes_project 7 137470763 137473271 - Prss36 protein_coding processed_transcript MGP_C57BL6NJ_T0082658.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23465810 23474470 + Smg9 protein_coding retained_intron MGP_C57BL6NJ_T0082659.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23465810 23488928 + MGP_C57BL6NJ_P0082659 Smg9 protein_coding protein_coding MGP_C57BL6NJ_T0082660.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23465915 23472048 + Smg9 protein_coding retained_intron MGP_C57BL6NJ_T0082661.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23466112 23473760 + MGP_C57BL6NJ_P0082661 Smg9 protein_coding protein_coding MGP_C57BL6NJ_T0082662.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23480882 23487080 + Smg9 protein_coding retained_intron MGP_C57BL6NJ_T0082663.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23481124 23487080 + MGP_C57BL6NJ_P0082663 Smg9 protein_coding protein_coding MGP_C57BL6NJ_T0082664.1 MGP_C57BL6NJ_G0032275.1 mouse_genomes_project 7 23486344 23488789 + Smg9 protein_coding retained_intron MGP_C57BL6NJ_T0086683.1 MGP_C57BL6NJ_G0033406.1 mouse_genomes_project 7 128321791 128343564 + MGP_C57BL6NJ_P0086683 Acsm5 protein_coding protein_coding MGP_C57BL6NJ_T0103423.1 MGP_C57BL6NJ_G0041215.1 mouse_genomes_project 7 39867325 39871391 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085451.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95095362 95301536 - MGP_C57BL6NJ_P0085451 Tmem135 protein_coding protein_coding MGP_C57BL6NJ_T0085452.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95097495 95109176 - Tmem135 protein_coding retained_intron MGP_C57BL6NJ_T0085453.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95101700 95301509 - MGP_C57BL6NJ_P0085453 Tmem135 protein_coding protein_coding MGP_C57BL6NJ_T0085454.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95109002 95114493 - Tmem135 protein_coding processed_transcript MGP_C57BL6NJ_T0085455.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95111323 95369484 - Tmem135 protein_coding processed_transcript MGP_C57BL6NJ_T0085456.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95113853 95258651 - Tmem135 protein_coding processed_transcript MGP_C57BL6NJ_T0085457.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95266175 95301440 - Tmem135 protein_coding retained_intron MGP_C57BL6NJ_T0085458.1 MGP_C57BL6NJ_G0032977.1 mouse_genomes_project 7 95267155 95301486 - MGP_C57BL6NJ_P0085458 Tmem135 protein_coding protein_coding MGP_C57BL6NJ_T0087372.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137113414 137120817 - MGP_C57BL6NJ_P0087372 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087373.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137113414 137121656 - MGP_C57BL6NJ_P0087373 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087374.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137113414 137121599 - MGP_C57BL6NJ_P0087374 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087375.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137114838 137121251 - MGP_C57BL6NJ_P0087375 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087376.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137114970 137121642 - MGP_C57BL6NJ_P0087376 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087377.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137115139 137122181 - MGP_C57BL6NJ_P0087377 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087378.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137118287 137120744 - MGP_C57BL6NJ_P0087378 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087379.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137118367 137121584 - MGP_C57BL6NJ_P0087379 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0087380.1 MGP_C57BL6NJ_G0033540.1 mouse_genomes_project 7 137118434 137120749 - MGP_C57BL6NJ_P0087380 Zfp629 protein_coding protein_coding MGP_C57BL6NJ_T0005470.1 MGP_C57BL6NJ_G0004635.1 mouse_genomes_project 7 151311633 151320100 - C330022C24Rik antisense antisense MGP_C57BL6NJ_T0087959.1 MGP_C57BL6NJ_G0033683.1 mouse_genomes_project 7 151229969 151241206 + MGP_C57BL6NJ_P0087959 Cyp2e1 protein_coding protein_coding MGP_C57BL6NJ_T0083215.1 MGP_C57BL6NJ_G0032418.1 mouse_genomes_project 7 28755038 28775171 + MGP_C57BL6NJ_P0083215 Map4k1 protein_coding protein_coding MGP_C57BL6NJ_T0083216.1 MGP_C57BL6NJ_G0032418.1 mouse_genomes_project 7 28755140 28775058 + MGP_C57BL6NJ_P0083216 Map4k1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099513.1 MGP_C57BL6NJ_G0037566.1 mouse_genomes_project 7 95299927 95333427 - sense_intronic sense_intronic MGP_C57BL6NJ_T0081839.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452002 1465029 - MGP_C57BL6NJ_P0081839 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081840.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452002 1465000 - MGP_C57BL6NJ_P0081840 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081841.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452095 1465000 - MGP_C57BL6NJ_P0081841 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081842.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452095 1464984 - MGP_C57BL6NJ_P0081842 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081843.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452187 1463393 - MGP_C57BL6NJ_P0081843 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081844.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452216 1458928 - Tnnt1 protein_coding retained_intron MGP_C57BL6NJ_T0081845.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1452218 1456994 - Tnnt1 protein_coding processed_transcript MGP_C57BL6NJ_T0081846.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1456562 1464986 - MGP_C57BL6NJ_P0081846 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081847.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1456594 1458788 - Tnnt1 protein_coding retained_intron MGP_C57BL6NJ_T0081848.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1457499 1463640 - MGP_C57BL6NJ_P0081848 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081849.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1457567 1463599 - MGP_C57BL6NJ_P0081849 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081850.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1458599 1465407 - MGP_C57BL6NJ_P0081850 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0081851.1 MGP_C57BL6NJ_G0031990.1 mouse_genomes_project 7 1462853 1464132 - MGP_C57BL6NJ_P0081851 Tnnt1 protein_coding protein_coding MGP_C57BL6NJ_T0086720.1 MGP_C57BL6NJ_G0033414.1 mouse_genomes_project 7 128683216 128728332 - MGP_C57BL6NJ_P0086720 Dcun1d3 protein_coding protein_coding MGP_C57BL6NJ_T0086721.1 MGP_C57BL6NJ_G0033414.1 mouse_genomes_project 7 128685866 128728130 - MGP_C57BL6NJ_P0086721 Dcun1d3 protein_coding protein_coding MGP_C57BL6NJ_T0086722.1 MGP_C57BL6NJ_G0033414.1 mouse_genomes_project 7 128687378 128728878 - MGP_C57BL6NJ_P0086722 Dcun1d3 protein_coding protein_coding MGP_C57BL6NJ_T0086723.1 MGP_C57BL6NJ_G0033414.1 mouse_genomes_project 7 128688046 128691886 - MGP_C57BL6NJ_P0086723 Dcun1d3 protein_coding protein_coding MGP_C57BL6NJ_T0086724.1 MGP_C57BL6NJ_G0033414.1 mouse_genomes_project 7 128689674 128691858 - MGP_C57BL6NJ_P0086724 Dcun1d3 protein_coding protein_coding MGP_C57BL6NJ_T0082678.1 MGP_C57BL6NJ_G0032279.1 mouse_genomes_project 7 23583954 23592360 + MGP_C57BL6NJ_P0082678 Zfp428 protein_coding protein_coding MGP_C57BL6NJ_T0082679.1 MGP_C57BL6NJ_G0032279.1 mouse_genomes_project 7 23584018 23592623 + MGP_C57BL6NJ_P0082679 Zfp428 protein_coding protein_coding MGP_C57BL6NJ_T0082680.1 MGP_C57BL6NJ_G0032279.1 mouse_genomes_project 7 23584047 23592044 + MGP_C57BL6NJ_P0082680 Zfp428 protein_coding protein_coding MGP_C57BL6NJ_T0082681.1 MGP_C57BL6NJ_G0032279.1 mouse_genomes_project 7 23584078 23592621 + MGP_C57BL6NJ_P0082681 Zfp428 protein_coding protein_coding MGP_C57BL6NJ_T0086328.1 MGP_C57BL6NJ_G0033323.1 mouse_genomes_project 7 116840809 116841739 + MGP_C57BL6NJ_P0086328 Olfr513 protein_coding protein_coding MGP_C57BL6NJ_T0088460.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155711358 155728622 + MGP_C57BL6NJ_P0088460 Oraov1 protein_coding protein_coding MGP_C57BL6NJ_T0088461.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155711390 155717380 + MGP_C57BL6NJ_P0088461 Oraov1 protein_coding protein_coding MGP_C57BL6NJ_T0088462.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155711426 155713957 + Oraov1 protein_coding retained_intron MGP_C57BL6NJ_T0088463.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155711428 155712713 + Oraov1 protein_coding processed_transcript MGP_C57BL6NJ_T0088464.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155711435 155727373 + MGP_C57BL6NJ_P0088464 Oraov1 protein_coding protein_coding MGP_C57BL6NJ_T0088465.1 MGP_C57BL6NJ_G0033787.1 mouse_genomes_project 7 155712391 155716075 + Oraov1 protein_coding retained_intron MGP_C57BL6NJ_T0083604.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098667 31109924 - MGP_C57BL6NJ_P0083604 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083605.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098671 31110566 - MGP_C57BL6NJ_P0083605 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083606.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098675 31108469 - Fxyd5 protein_coding retained_intron MGP_C57BL6NJ_T0083607.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098675 31103878 - Fxyd5 protein_coding retained_intron MGP_C57BL6NJ_T0083608.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098675 31110203 - MGP_C57BL6NJ_P0083608 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083609.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098675 31107091 - MGP_C57BL6NJ_P0083609 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083610.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098678 31110163 - MGP_C57BL6NJ_P0083610 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083611.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098678 31110163 - MGP_C57BL6NJ_P0083611 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083612.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098708 31110231 - MGP_C57BL6NJ_P0083612 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083613.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31098752 31110225 - MGP_C57BL6NJ_P0083613 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083614.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31102401 31110201 - MGP_C57BL6NJ_P0083614 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083615.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31102430 31110198 - MGP_C57BL6NJ_P0083615 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083616.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31102432 31110172 - MGP_C57BL6NJ_P0083616 Fxyd5 protein_coding protein_coding MGP_C57BL6NJ_T0083617.1 MGP_C57BL6NJ_G0032506.1 mouse_genomes_project 7 31109255 31110225 - Fxyd5 protein_coding retained_intron MGP_C57BL6NJ_T0016198.1 MGP_C57BL6NJ_G0014243.1 mouse_genomes_project 7 32109091 32110100 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081935.1 MGP_C57BL6NJ_G0032014.1 mouse_genomes_project 7 1976845 1987693 - MGP_C57BL6NJ_P0081935 Sbk2 protein_coding protein_coding MGP_C57BL6NJ_T0081936.1 MGP_C57BL6NJ_G0032014.1 mouse_genomes_project 7 1977792 1987696 - MGP_C57BL6NJ_P0081936 Sbk2 protein_coding protein_coding MGP_C57BL6NJ_T0081937.1 MGP_C57BL6NJ_G0032014.1 mouse_genomes_project 7 1978233 1987702 - MGP_C57BL6NJ_P0081937 Sbk2 protein_coding protein_coding MGP_C57BL6NJ_T0081938.1 MGP_C57BL6NJ_G0032014.1 mouse_genomes_project 7 1981777 1987738 - Sbk2 protein_coding processed_transcript MGP_C57BL6NJ_T0088147.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978116 151984029 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088148.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978116 151984062 - MGP_C57BL6NJ_P0088148 Pidd1 protein_coding protein_coding MGP_C57BL6NJ_T0088149.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978116 151983393 - MGP_C57BL6NJ_P0088149 Pidd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088150.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978116 151983390 - MGP_C57BL6NJ_P0088150 Pidd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088151.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978120 151984045 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088152.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978128 151983393 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088153.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978518 151983392 - MGP_C57BL6NJ_P0088153 Pidd1 protein_coding protein_coding MGP_C57BL6NJ_T0088154.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978528 151983357 - MGP_C57BL6NJ_P0088154 Pidd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088155.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151978533 151983357 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088156.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151979502 151980161 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088157.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151981086 151982326 - Pidd1 protein_coding retained_intron MGP_C57BL6NJ_T0088158.1 MGP_C57BL6NJ_G0033724.1 mouse_genomes_project 7 151982202 151984031 - Pidd1 protein_coding processed_transcript MGP_C57BL6NJ_T0087127.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136187990 136192011 - MGP_C57BL6NJ_P0087127 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087128.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136187991 136193183 - MGP_C57BL6NJ_P0087128 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087129.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136187992 136191898 - MGP_C57BL6NJ_P0087129 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087130.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136188668 136191039 - Aldoa protein_coding processed_transcript MGP_C57BL6NJ_T0087131.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136188705 136191064 - Aldoa protein_coding retained_intron MGP_C57BL6NJ_T0087132.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136188705 136190508 - Aldoa protein_coding retained_intron MGP_C57BL6NJ_T0087133.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136188795 136192782 - MGP_C57BL6NJ_P0087133 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087134.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136189027 136191750 - MGP_C57BL6NJ_P0087134 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087135.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136189238 136191927 - Aldoa protein_coding retained_intron MGP_C57BL6NJ_T0087136.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136189424 136191866 - MGP_C57BL6NJ_P0087136 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087137.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136189474 136192772 - MGP_C57BL6NJ_P0087137 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0087138.1 MGP_C57BL6NJ_G0033494.1 mouse_genomes_project 7 136189596 136193487 - MGP_C57BL6NJ_P0087138 Aldoa protein_coding protein_coding MGP_C57BL6NJ_T0016367.1 MGP_C57BL6NJ_G0014412.1 mouse_genomes_project 7 134500639 134501077 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082466.1 MGP_C57BL6NJ_G0032215.1 mouse_genomes_project 7 18134133 18137321 - MGP_C57BL6NJ_P0082466 Ppm1n protein_coding protein_coding MGP_C57BL6NJ_T0082467.1 MGP_C57BL6NJ_G0032215.1 mouse_genomes_project 7 18134170 18135658 - Ppm1n protein_coding retained_intron MGP_C57BL6NJ_T0082468.1 MGP_C57BL6NJ_G0032215.1 mouse_genomes_project 7 18135077 18135412 - Ppm1n protein_coding retained_intron MGP_C57BL6NJ_T0082469.1 MGP_C57BL6NJ_G0032215.1 mouse_genomes_project 7 18136073 18136858 - Ppm1n protein_coding retained_intron MGP_C57BL6NJ_T0011172.1 MGP_C57BL6NJ_G0009257.1 mouse_genomes_project 7 117634680 117634800 + miRNA miRNA MGP_C57BL6NJ_T0016378.1 MGP_C57BL6NJ_G0014423.1 mouse_genomes_project 7 136898076 136898248 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084518.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49346569 49372537 - MGP_C57BL6NJ_P0084518 Saal1 protein_coding protein_coding MGP_C57BL6NJ_T0084519.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49349604 49370774 - Saal1 protein_coding retained_intron MGP_C57BL6NJ_T0084520.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49349639 49372498 - Saal1 protein_coding retained_intron MGP_C57BL6NJ_T0084521.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49349641 49350233 - Saal1 protein_coding processed_transcript MGP_C57BL6NJ_T0084522.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49352424 49372515 - Saal1 protein_coding retained_intron MGP_C57BL6NJ_T0084523.1 MGP_C57BL6NJ_G0032750.1 mouse_genomes_project 7 49352846 49372518 - Saal1 protein_coding retained_intron MGP_C57BL6NJ_T0009040.1 MGP_C57BL6NJ_G0007301.1 mouse_genomes_project 7 41871529 41878560 + 4933404I11Rik lincRNA lincRNA MGP_C57BL6NJ_T0101897.1 MGP_C57BL6NJ_G0039943.1 mouse_genomes_project 7 126834265 126834396 + Gm25683 snoRNA snoRNA MGP_C57BL6NJ_T0084015.1 MGP_C57BL6NJ_G0032613.1 mouse_genomes_project 7 46005756 46010445 + MGP_C57BL6NJ_P0084015 Klk12 protein_coding protein_coding MGP_C57BL6NJ_T0084016.1 MGP_C57BL6NJ_G0032613.1 mouse_genomes_project 7 46005959 46010335 + MGP_C57BL6NJ_P0084016 Klk12 protein_coding protein_coding MGP_C57BL6NJ_T0081661.1 MGP_C57BL6NJ_G0031957.1 mouse_genomes_project 7 103300 139156 - MGP_C57BL6NJ_P0081661 Nlrp12 protein_coding protein_coding MGP_C57BL6NJ_T0081662.1 MGP_C57BL6NJ_G0031957.1 mouse_genomes_project 7 127740 139283 - Nlrp12 protein_coding retained_intron MGP_C57BL6NJ_T0103406.1 MGP_C57BL6NJ_G0041198.1 mouse_genomes_project 7 34426366 34428159 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103502.1 MGP_C57BL6NJ_G0041294.1 mouse_genomes_project 7 91298287 91299162 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087542.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137861954 137865424 - BC017158 protein_coding retained_intron MGP_C57BL6NJ_T0087543.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137861954 137890188 - MGP_C57BL6NJ_P0087543 BC017158 protein_coding protein_coding MGP_C57BL6NJ_T0087544.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137862682 137890126 - BC017158 protein_coding retained_intron MGP_C57BL6NJ_T0087545.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137862682 137890127 - BC017158 protein_coding retained_intron MGP_C57BL6NJ_T0087546.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137862901 137890113 - MGP_C57BL6NJ_P0087546 BC017158 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087547.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137866540 137889594 - BC017158 protein_coding retained_intron MGP_C57BL6NJ_T0087548.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137866876 137878673 - BC017158 protein_coding retained_intron MGP_C57BL6NJ_T0087549.1 MGP_C57BL6NJ_G0033574.1 mouse_genomes_project 7 137877932 137880583 - MGP_C57BL6NJ_P0087549 BC017158 protein_coding protein_coding MGP_C57BL6NJ_T0083709.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35110236 35139128 - MGP_C57BL6NJ_P0083709 Uba2 protein_coding protein_coding MGP_C57BL6NJ_T0083710.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35110262 35111635 - Uba2 protein_coding retained_intron MGP_C57BL6NJ_T0083711.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35110631 35114097 - MGP_C57BL6NJ_P0083711 Uba2 protein_coding protein_coding MGP_C57BL6NJ_T0083712.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35110938 35112818 - Uba2 protein_coding retained_intron MGP_C57BL6NJ_T0083713.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35111977 35115823 - Uba2 protein_coding retained_intron MGP_C57BL6NJ_T0083714.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35122180 35132307 - MGP_C57BL6NJ_P0083714 Uba2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083715.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35125183 35128253 - Uba2 protein_coding retained_intron MGP_C57BL6NJ_T0083716.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35125778 35134971 - MGP_C57BL6NJ_P0083716 Uba2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083717.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35132253 35140152 - MGP_C57BL6NJ_P0083717 Uba2 protein_coding protein_coding MGP_C57BL6NJ_T0083718.1 MGP_C57BL6NJ_G0032536.1 mouse_genomes_project 7 35133587 35134894 - Uba2 protein_coding retained_intron MGP_C57BL6NJ_T0009201.1 MGP_C57BL6NJ_G0007410.1 mouse_genomes_project 7 134571075 134622800 - 4933440M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0009202.1 MGP_C57BL6NJ_G0007410.1 mouse_genomes_project 7 134614262 134634295 - 4933440M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0009203.1 MGP_C57BL6NJ_G0007410.1 mouse_genomes_project 7 134616401 134634311 - 4933440M02Rik lincRNA lincRNA MGP_C57BL6NJ_T0103350.1 MGP_C57BL6NJ_G0041143.1 mouse_genomes_project 7 12264497 12270064 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087632.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140264907 140279702 - MGP_C57BL6NJ_P0087632 Nsmce4a protein_coding protein_coding MGP_C57BL6NJ_T0087633.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140264917 140268381 - Nsmce4a protein_coding retained_intron MGP_C57BL6NJ_T0087634.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140266154 140305278 - MGP_C57BL6NJ_P0087634 Nsmce4a protein_coding protein_coding MGP_C57BL6NJ_T0087635.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140267956 140271915 - Nsmce4a protein_coding retained_intron MGP_C57BL6NJ_T0087636.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140269390 140278275 - MGP_C57BL6NJ_P0087636 Nsmce4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087637.1 MGP_C57BL6NJ_G0033585.1 mouse_genomes_project 7 140272115 140275142 - Nsmce4a protein_coding retained_intron MGP_C57BL6NJ_T0084597.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 51821022 51882391 + Nav2 protein_coding processed_transcript MGP_C57BL6NJ_T0084598.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 51877648 51887769 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084599.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 51877672 52568524 + MGP_C57BL6NJ_P0084599 Nav2 protein_coding protein_coding MGP_C57BL6NJ_T0084600.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52184130 52356432 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084601.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52184130 52574895 + MGP_C57BL6NJ_P0084601 Nav2 protein_coding protein_coding MGP_C57BL6NJ_T0084602.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52184785 52574898 + MGP_C57BL6NJ_P0084602 Nav2 protein_coding protein_coding MGP_C57BL6NJ_T0084603.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52184786 52448582 + MGP_C57BL6NJ_P0084603 Nav2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084604.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52184909 52568524 + MGP_C57BL6NJ_P0084604 Nav2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084605.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52243317 52358195 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084606.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52243431 52385675 + Nav2 protein_coding processed_transcript MGP_C57BL6NJ_T0084607.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52243433 52245097 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084608.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52309552 52402574 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084609.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52398691 52417977 + Nav2 protein_coding processed_transcript MGP_C57BL6NJ_T0084610.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52505304 52514103 + MGP_C57BL6NJ_P0084610 Nav2 protein_coding protein_coding MGP_C57BL6NJ_T0084611.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52511004 52513843 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084612.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52533513 52534979 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084613.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52543617 52545201 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0084614.1 MGP_C57BL6NJ_G0032781.1 mouse_genomes_project 7 52545790 52550307 + Nav2 protein_coding retained_intron MGP_C57BL6NJ_T0087313.1 MGP_C57BL6NJ_G0033531.1 mouse_genomes_project 7 136931811 136938834 - MGP_C57BL6NJ_P0087313 Zfp689 protein_coding protein_coding MGP_C57BL6NJ_T0087314.1 MGP_C57BL6NJ_G0033531.1 mouse_genomes_project 7 136933430 136938669 - MGP_C57BL6NJ_P0087314 Zfp689 protein_coding protein_coding MGP_C57BL6NJ_T0011107.1 MGP_C57BL6NJ_G0009192.1 mouse_genomes_project 7 28240481 28240541 - Mir7049 miRNA miRNA MGP_C57BL6NJ_T0016313.1 MGP_C57BL6NJ_G0014358.1 mouse_genomes_project 7 90545460 90546583 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002353.1 MGP_C57BL6NJ_G0002243.1 mouse_genomes_project 7 38011432 38012974 + TEC TEC MGP_C57BL6NJ_T0009194.1 MGP_C57BL6NJ_G0007404.1 mouse_genomes_project 7 129612122 129616204 - 9030407P20Rik lincRNA lincRNA MGP_C57BL6NJ_T0009195.1 MGP_C57BL6NJ_G0007404.1 mouse_genomes_project 7 129612418 129616244 - 9030407P20Rik lincRNA lincRNA MGP_C57BL6NJ_T0101858.1 MGP_C57BL6NJ_G0039904.1 mouse_genomes_project 7 47632277 47632360 - Snord32a snoRNA snoRNA MGP_C57BL6NJ_T0082603.1 MGP_C57BL6NJ_G0032256.1 mouse_genomes_project 7 22435959 22436907 - MGP_C57BL6NJ_P0082603 protein_coding protein_coding MGP_C57BL6NJ_T0082360.1 MGP_C57BL6NJ_G0032177.1 mouse_genomes_project 7 16325294 16382145 + MGP_C57BL6NJ_P0082360 Ceacam5 protein_coding protein_coding MGP_C57BL6NJ_T0018810.1 MGP_C57BL6NJ_G0016057.1 mouse_genomes_project 7 46637371 46660547 + Gm28496 processed_transcript processed_transcript MGP_C57BL6NJ_T0018811.1 MGP_C57BL6NJ_G0016057.1 mouse_genomes_project 7 46637419 46659715 + Gm28496 processed_transcript processed_transcript MGP_C57BL6NJ_T0005378.1 MGP_C57BL6NJ_G0004570.1 mouse_genomes_project 7 49210988 49227540 + Gm15700 antisense antisense MGP_C57BL6NJ_T0002340.1 MGP_C57BL6NJ_G0002230.1 mouse_genomes_project 7 17679538 17680775 + TEC TEC MGP_C57BL6NJ_T0011109.1 MGP_C57BL6NJ_G0009194.1 mouse_genomes_project 7 28859868 28859927 - Mir1963 miRNA miRNA MGP_C57BL6NJ_T0009059.1 MGP_C57BL6NJ_G0007315.1 mouse_genomes_project 7 46625795 46633837 + Gm36864 lincRNA lincRNA MGP_C57BL6NJ_T0101883.1 MGP_C57BL6NJ_G0039929.1 mouse_genomes_project 7 106189228 106189373 - Snord15b snoRNA snoRNA MGP_C57BL6NJ_T0016365.1 MGP_C57BL6NJ_G0014410.1 mouse_genomes_project 7 132103885 132104396 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086757.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129683706 129752208 + MGP_C57BL6NJ_P0086757 Vwa3a protein_coding protein_coding MGP_C57BL6NJ_T0086758.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129683706 129736277 + MGP_C57BL6NJ_P0086758 Vwa3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086759.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129684196 129752407 + MGP_C57BL6NJ_P0086759 Vwa3a protein_coding protein_coding MGP_C57BL6NJ_T0086760.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129684196 129752205 + MGP_C57BL6NJ_P0086760 Vwa3a protein_coding protein_coding MGP_C57BL6NJ_T0086761.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129684260 129751192 + MGP_C57BL6NJ_P0086761 Vwa3a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086762.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129728573 129736278 + MGP_C57BL6NJ_P0086762 Vwa3a protein_coding protein_coding MGP_C57BL6NJ_T0086763.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129730231 129736278 + Vwa3a protein_coding processed_transcript MGP_C57BL6NJ_T0086764.1 MGP_C57BL6NJ_G0033427.1 mouse_genomes_project 7 129732661 129738794 + MGP_C57BL6NJ_P0086764 Vwa3a protein_coding protein_coding MGP_C57BL6NJ_T0011198.1 MGP_C57BL6NJ_G0009283.1 mouse_genomes_project 7 154243121 154243210 - Mir7064 miRNA miRNA MGP_C57BL6NJ_T0005463.1 MGP_C57BL6NJ_G0004630.1 mouse_genomes_project 7 138369771 138370869 - Gm44672 antisense antisense MGP_C57BL6NJ_T0009230.1 MGP_C57BL6NJ_G0007427.1 mouse_genomes_project 7 139057623 139062420 - Gm44591 lincRNA lincRNA MGP_C57BL6NJ_T0101894.1 MGP_C57BL6NJ_G0039940.1 mouse_genomes_project 7 120934370 120934500 - Gm24154 snoRNA snoRNA MGP_C57BL6NJ_T0100583.1 MGP_C57BL6NJ_G0038629.1 mouse_genomes_project 7 47765251 47765353 - Gm23585 snRNA snRNA MGP_C57BL6NJ_T0081933.1 MGP_C57BL6NJ_G0032012.1 mouse_genomes_project 7 1940014 1942746 + MGP_C57BL6NJ_P0081933 Nat14 protein_coding protein_coding MGP_C57BL6NJ_T0084046.1 MGP_C57BL6NJ_G0032632.1 mouse_genomes_project 7 46511710 46516497 + MGP_C57BL6NJ_P0084046 protein_coding protein_coding MGP_C57BL6NJ_T0084561.1 MGP_C57BL6NJ_G0032759.1 mouse_genomes_project 7 49673759 49677975 + protein_coding processed_transcript MGP_C57BL6NJ_T0084562.1 MGP_C57BL6NJ_G0032759.1 mouse_genomes_project 7 49673840 49677983 + protein_coding processed_transcript MGP_C57BL6NJ_T0084563.1 MGP_C57BL6NJ_G0032759.1 mouse_genomes_project 7 49676999 49677976 + MGP_C57BL6NJ_P0084563 protein_coding protein_coding MGP_C57BL6NJ_T0084193.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47313161 47321171 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0084194.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47313284 47321335 - MGP_C57BL6NJ_P0084194 Tbc1d17 protein_coding protein_coding MGP_C57BL6NJ_T0084195.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47313292 47321339 - MGP_C57BL6NJ_P0084195 Tbc1d17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084196.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47313293 47321150 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0084197.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47315639 47316584 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0084198.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47316836 47318260 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0084199.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47320285 47321155 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0084200.1 MGP_C57BL6NJ_G0032663.1 mouse_genomes_project 7 47320534 47320854 - Tbc1d17 protein_coding retained_intron MGP_C57BL6NJ_T0009079.1 MGP_C57BL6NJ_G0007330.1 mouse_genomes_project 7 70200321 70200893 - Gm45081 lincRNA lincRNA MGP_C57BL6NJ_T0011948.1 MGP_C57BL6NJ_G0010033.1 mouse_genomes_project 7 41975997 41976269 + Gm24910 misc_RNA misc_RNA MGP_C57BL6NJ_T0087702.1 MGP_C57BL6NJ_G0033607.1 mouse_genomes_project 7 142529529 142534289 - MGP_C57BL6NJ_P0087702 Nkx1-2 protein_coding protein_coding MGP_C57BL6NJ_T0016270.1 MGP_C57BL6NJ_G0014315.1 mouse_genomes_project 7 57732468 57732775 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086088.1 MGP_C57BL6NJ_G0033192.1 mouse_genomes_project 7 111555268 111623840 - MGP_C57BL6NJ_P0086088 protein_coding protein_coding MGP_C57BL6NJ_T0016330.1 MGP_C57BL6NJ_G0014375.1 mouse_genomes_project 7 104204157 104204717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005333.1 MGP_C57BL6NJ_G0004536.1 mouse_genomes_project 7 26280560 26283427 - Gm44963 antisense antisense MGP_C57BL6NJ_T0085405.1 MGP_C57BL6NJ_G0032949.1 mouse_genomes_project 7 91482986 91505264 - MGP_C57BL6NJ_P0085405 Vmn2r72 protein_coding protein_coding MGP_C57BL6NJ_T0103447.1 MGP_C57BL6NJ_G0041239.1 mouse_genomes_project 7 46394412 46394563 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086465.1 MGP_C57BL6NJ_G0033360.1 mouse_genomes_project 7 120305309 120403531 + MGP_C57BL6NJ_P0086465 Usp47 protein_coding protein_coding MGP_C57BL6NJ_T0086466.1 MGP_C57BL6NJ_G0033360.1 mouse_genomes_project 7 120305511 120403536 + MGP_C57BL6NJ_P0086466 Usp47 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082240.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589402 14593082 + MGP_C57BL6NJ_P0082240 Meis3 protein_coding protein_coding MGP_C57BL6NJ_T0082241.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589451 14593080 + MGP_C57BL6NJ_P0082241 Meis3 protein_coding protein_coding MGP_C57BL6NJ_T0082242.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589587 14602471 + MGP_C57BL6NJ_P0082242 Meis3 protein_coding protein_coding MGP_C57BL6NJ_T0082243.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589700 14602468 + Meis3 protein_coding retained_intron MGP_C57BL6NJ_T0082244.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589742 14602471 + MGP_C57BL6NJ_P0082244 Meis3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082245.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14589742 14602471 + MGP_C57BL6NJ_P0082245 Meis3 protein_coding protein_coding MGP_C57BL6NJ_T0082246.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14592034 14592763 + Meis3 protein_coding retained_intron MGP_C57BL6NJ_T0082247.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14593330 14601482 + MGP_C57BL6NJ_P0082247 Meis3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082248.1 MGP_C57BL6NJ_G0032146.1 mouse_genomes_project 7 14600056 14602471 + Meis3 protein_coding retained_intron MGP_C57BL6NJ_T0087947.1 MGP_C57BL6NJ_G0033671.1 mouse_genomes_project 7 150843199 150844114 - MGP_C57BL6NJ_P0087947 Olfr531 protein_coding protein_coding MGP_C57BL6NJ_T0086317.1 MGP_C57BL6NJ_G0033312.1 mouse_genomes_project 7 116403612 116404559 + MGP_C57BL6NJ_P0086317 protein_coding protein_coding MGP_C57BL6NJ_T0016347.1 MGP_C57BL6NJ_G0014392.1 mouse_genomes_project 7 112243946 112244999 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086256.1 MGP_C57BL6NJ_G0033259.1 mouse_genomes_project 7 114428624 114437181 - MGP_C57BL6NJ_P0086256 protein_coding protein_coding MGP_C57BL6NJ_T0085989.1 MGP_C57BL6NJ_G0033103.1 mouse_genomes_project 7 109662922 109663876 + MGP_C57BL6NJ_P0085989 Olfr554 protein_coding protein_coding MGP_C57BL6NJ_T0099153.1 MGP_C57BL6NJ_G0037217.1 mouse_genomes_project 7 106209678 106209783 + n-R5s156 rRNA rRNA MGP_C57BL6NJ_T0005418.1 MGP_C57BL6NJ_G0004598.1 mouse_genomes_project 7 103344130 103354247 - Gm15413 antisense antisense MGP_C57BL6NJ_T0009136.1 MGP_C57BL6NJ_G0007370.1 mouse_genomes_project 7 84677497 84683262 - Gm45169 lincRNA lincRNA MGP_C57BL6NJ_T0005307.1 MGP_C57BL6NJ_G0004520.1 mouse_genomes_project 7 4282413 4305448 - Zim3 antisense antisense MGP_C57BL6NJ_T0005308.1 MGP_C57BL6NJ_G0004520.1 mouse_genomes_project 7 4291687 4304255 - Zim3 antisense antisense MGP_C57BL6NJ_T0005309.1 MGP_C57BL6NJ_G0004520.1 mouse_genomes_project 7 4305086 4306205 - Zim3 antisense antisense MGP_C57BL6NJ_T0016118.1 MGP_C57BL6NJ_G0014163.1 mouse_genomes_project 7 1354398 1354861 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088456.1 MGP_C57BL6NJ_G0033784.1 mouse_genomes_project 7 155630231 155634868 + MGP_C57BL6NJ_P0088456 Fgf3 protein_coding protein_coding MGP_C57BL6NJ_T0088457.1 MGP_C57BL6NJ_G0033784.1 mouse_genomes_project 7 155630743 155636585 + MGP_C57BL6NJ_P0088457 Fgf3 protein_coding protein_coding MGP_C57BL6NJ_T0081951.1 MGP_C57BL6NJ_G0032019.1 mouse_genomes_project 7 2054911 2067749 + MGP_C57BL6NJ_P0081951 Zfp865 protein_coding protein_coding MGP_C57BL6NJ_T0082176.1 MGP_C57BL6NJ_G0032122.1 mouse_genomes_project 7 11965461 12246614 - MGP_C57BL6NJ_P0082176 Sult2a3 protein_coding protein_coding MGP_C57BL6NJ_T0085332.1 MGP_C57BL6NJ_G0032922.1 mouse_genomes_project 7 87337212 87364692 - MGP_C57BL6NJ_P0085332 Bnc1 protein_coding protein_coding MGP_C57BL6NJ_T0081966.1 MGP_C57BL6NJ_G0032028.1 mouse_genomes_project 7 2160095 2167205 - MGP_C57BL6NJ_P0081966 Rfpl4 protein_coding protein_coding MGP_C57BL6NJ_T0081967.1 MGP_C57BL6NJ_G0032028.1 mouse_genomes_project 7 2160095 2167205 - MGP_C57BL6NJ_P0081967 Rfpl4 protein_coding protein_coding MGP_C57BL6NJ_T0084240.1 MGP_C57BL6NJ_G0032675.1 mouse_genomes_project 7 47483210 47488468 + MGP_C57BL6NJ_P0084240 Irf3 protein_coding protein_coding MGP_C57BL6NJ_T0084241.1 MGP_C57BL6NJ_G0032675.1 mouse_genomes_project 7 47483511 47488010 + MGP_C57BL6NJ_P0084241 Irf3 protein_coding protein_coding MGP_C57BL6NJ_T0088468.1 MGP_C57BL6NJ_G0033789.1 mouse_genomes_project 7 156080605 156110626 - MGP_C57BL6NJ_P0088468 Tpcn2 protein_coding protein_coding MGP_C57BL6NJ_T0081898.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744958 1746190 - MGP_C57BL6NJ_P0081898 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081899.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744958 1746190 - MGP_C57BL6NJ_P0081899 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081900.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744958 1746261 - MGP_C57BL6NJ_P0081900 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081901.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744958 1746139 - MGP_C57BL6NJ_P0081901 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081902.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744960 1746176 - MGP_C57BL6NJ_P0081902 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081903.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1744961 1746190 - MGP_C57BL6NJ_P0081903 Cox6b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081904.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1745021 1746205 - MGP_C57BL6NJ_P0081904 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0081905.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1745091 1745695 - Cox6b2 protein_coding retained_intron MGP_C57BL6NJ_T0081906.1 MGP_C57BL6NJ_G0032001.1 mouse_genomes_project 7 1745113 1746169 - MGP_C57BL6NJ_P0081906 Cox6b2 protein_coding protein_coding MGP_C57BL6NJ_T0086697.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128584319 128607849 + MGP_C57BL6NJ_P0086697 Acsm3 protein_coding protein_coding MGP_C57BL6NJ_T0086698.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128584319 128607853 + MGP_C57BL6NJ_P0086698 Acsm3 protein_coding protein_coding MGP_C57BL6NJ_T0086699.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128584320 128607851 + MGP_C57BL6NJ_P0086699 Acsm3 protein_coding protein_coding MGP_C57BL6NJ_T0086700.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128584320 128610473 + MGP_C57BL6NJ_P0086700 Acsm3 protein_coding protein_coding MGP_C57BL6NJ_T0086701.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128589356 128607856 + MGP_C57BL6NJ_P0086701 Acsm3 protein_coding protein_coding MGP_C57BL6NJ_T0086704.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128597529 128602191 + Acsm3 protein_coding retained_intron MGP_C57BL6NJ_T0086705.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128600007 128603973 + Acsm3 protein_coding retained_intron MGP_C57BL6NJ_T0086706.1 MGP_C57BL6NJ_G0033411.1 mouse_genomes_project 7 128603695 128604014 + Acsm3 protein_coding retained_intron MGP_C57BL6NJ_T0103465.1 MGP_C57BL6NJ_G0041257.1 mouse_genomes_project 7 50368013 50440214 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103427.1 MGP_C57BL6NJ_G0041219.1 mouse_genomes_project 7 42794337 42795144 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085637.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994433 105005048 - MGP_C57BL6NJ_P0085637 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085638.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994433 105005088 - MGP_C57BL6NJ_P0085638 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085639.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994433 105005048 - MGP_C57BL6NJ_P0085639 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085640.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994433 105005052 - MGP_C57BL6NJ_P0085640 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085641.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994551 105003839 - MGP_C57BL6NJ_P0085641 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085642.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994551 105003839 - MGP_C57BL6NJ_P0085642 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085643.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104994633 105005048 - MGP_C57BL6NJ_P0085643 Tsku protein_coding protein_coding MGP_C57BL6NJ_T0085644.1 MGP_C57BL6NJ_G0033021.1 mouse_genomes_project 7 104997302 105003947 - Tsku protein_coding processed_transcript MGP_C57BL6NJ_T0016199.1 MGP_C57BL6NJ_G0014244.1 mouse_genomes_project 7 32109094 32110091 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085392.1 MGP_C57BL6NJ_G0032940.1 mouse_genomes_project 7 90100028 90126553 - MGP_C57BL6NJ_P0085392 Fah protein_coding protein_coding MGP_C57BL6NJ_T0085393.1 MGP_C57BL6NJ_G0032940.1 mouse_genomes_project 7 90114718 90127447 - MGP_C57BL6NJ_P0085393 Fah protein_coding protein_coding MGP_C57BL6NJ_T0085394.1 MGP_C57BL6NJ_G0032940.1 mouse_genomes_project 7 90120228 90121252 - Fah protein_coding processed_transcript MGP_C57BL6NJ_T0085395.1 MGP_C57BL6NJ_G0032940.1 mouse_genomes_project 7 90120772 90126455 - Fah protein_coding retained_intron MGP_C57BL6NJ_T0087964.1 MGP_C57BL6NJ_G0033686.1 mouse_genomes_project 7 151309430 151312300 + MGP_C57BL6NJ_P0087964 Urah protein_coding protein_coding MGP_C57BL6NJ_T0087965.1 MGP_C57BL6NJ_G0033686.1 mouse_genomes_project 7 151309691 151312379 + MGP_C57BL6NJ_P0087965 Urah protein_coding protein_coding MGP_C57BL6NJ_T0087966.1 MGP_C57BL6NJ_G0033686.1 mouse_genomes_project 7 151309709 151312384 + MGP_C57BL6NJ_P0087966 Urah protein_coding protein_coding MGP_C57BL6NJ_T0087967.1 MGP_C57BL6NJ_G0033686.1 mouse_genomes_project 7 151309746 151311481 + Urah protein_coding retained_intron MGP_C57BL6NJ_T0082174.1 MGP_C57BL6NJ_G0032120.1 mouse_genomes_project 7 11644892 11820046 + MGP_C57BL6NJ_P0082174 Sult2a2 protein_coding protein_coding MGP_C57BL6NJ_T0101896.1 MGP_C57BL6NJ_G0039942.1 mouse_genomes_project 7 124880840 124880927 - Snord14a snoRNA snoRNA MGP_C57BL6NJ_T0085369.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89124760 89137398 - Il16 protein_coding retained_intron MGP_C57BL6NJ_T0085370.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89124976 89221466 - MGP_C57BL6NJ_P0085370 Il16 protein_coding protein_coding MGP_C57BL6NJ_T0085371.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89131488 89137228 - Il16 protein_coding retained_intron MGP_C57BL6NJ_T0085372.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89142783 89231672 - MGP_C57BL6NJ_P0085372 Il16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085373.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89208454 89218350 - MGP_C57BL6NJ_P0085373 Il16 protein_coding protein_coding MGP_C57BL6NJ_T0085374.1 MGP_C57BL6NJ_G0032932.1 mouse_genomes_project 7 89208454 89225880 - MGP_C57BL6NJ_P0085374 Il16 protein_coding protein_coding MGP_C57BL6NJ_T0085119.1 MGP_C57BL6NJ_G0032884.1 mouse_genomes_project 7 85175188 85252767 + MGP_C57BL6NJ_P0085119 Zfp710 protein_coding protein_coding MGP_C57BL6NJ_T0085120.1 MGP_C57BL6NJ_G0032884.1 mouse_genomes_project 7 85175208 85250424 + MGP_C57BL6NJ_P0085120 Zfp710 protein_coding protein_coding MGP_C57BL6NJ_T0085121.1 MGP_C57BL6NJ_G0032884.1 mouse_genomes_project 7 85176411 85251343 + MGP_C57BL6NJ_P0085121 Zfp710 protein_coding protein_coding MGP_C57BL6NJ_T0085122.1 MGP_C57BL6NJ_G0032884.1 mouse_genomes_project 7 85176761 85245443 + MGP_C57BL6NJ_P0085122 Zfp710 protein_coding protein_coding MGP_C57BL6NJ_T0085123.1 MGP_C57BL6NJ_G0032884.1 mouse_genomes_project 7 85180640 85239766 + MGP_C57BL6NJ_P0085123 Zfp710 protein_coding protein_coding MGP_C57BL6NJ_T0002396.1 MGP_C57BL6NJ_G0002286.1 mouse_genomes_project 7 78195935 78198053 - TEC TEC MGP_C57BL6NJ_T0016117.1 MGP_C57BL6NJ_G0014162.1 mouse_genomes_project 7 1291773 1291951 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082848.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24988768 24994783 - MGP_C57BL6NJ_P0082848 Tmem91 protein_coding protein_coding MGP_C57BL6NJ_T0082849.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24988771 24993090 - MGP_C57BL6NJ_P0082849 Tmem91 protein_coding protein_coding MGP_C57BL6NJ_T0082850.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24988871 24994707 - MGP_C57BL6NJ_P0082850 Tmem91 protein_coding protein_coding MGP_C57BL6NJ_T0082851.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24988871 24994664 - MGP_C57BL6NJ_P0082851 Tmem91 protein_coding protein_coding MGP_C57BL6NJ_T0082852.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24989673 24994736 - Tmem91 protein_coding retained_intron MGP_C57BL6NJ_T0082853.1 MGP_C57BL6NJ_G0032322.1 mouse_genomes_project 7 24990813 24994735 - Tmem91 protein_coding retained_intron MGP_C57BL6NJ_T0086041.1 MGP_C57BL6NJ_G0033152.1 mouse_genomes_project 7 110769668 110770610 - MGP_C57BL6NJ_P0086041 Olfr620 protein_coding protein_coding MGP_C57BL6NJ_T0083813.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36583051 36653134 - MGP_C57BL6NJ_P0083813 protein_coding protein_coding MGP_C57BL6NJ_T0083814.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36585145 36653135 - MGP_C57BL6NJ_P0083814 protein_coding protein_coding MGP_C57BL6NJ_T0083815.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36608903 36653290 - MGP_C57BL6NJ_P0083815 protein_coding protein_coding MGP_C57BL6NJ_T0083816.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36608906 36653342 - MGP_C57BL6NJ_P0083816 protein_coding protein_coding MGP_C57BL6NJ_T0083817.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36608935 36620303 - MGP_C57BL6NJ_P0083817 protein_coding protein_coding MGP_C57BL6NJ_T0083818.1 MGP_C57BL6NJ_G0032554.1 mouse_genomes_project 7 36624070 36653290 - MGP_C57BL6NJ_P0083818 protein_coding protein_coding MGP_C57BL6NJ_T0087807.1 MGP_C57BL6NJ_G0033630.1 mouse_genomes_project 7 145865497 145892056 - MGP_C57BL6NJ_P0087807 Mki67 protein_coding protein_coding MGP_C57BL6NJ_T0086222.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113361112 113366517 - MGP_C57BL6NJ_P0086222 Rrp8 protein_coding protein_coding MGP_C57BL6NJ_T0086223.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113361309 113367112 - MGP_C57BL6NJ_P0086223 Rrp8 protein_coding protein_coding MGP_C57BL6NJ_T0086224.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113361545 113362587 - Rrp8 protein_coding retained_intron MGP_C57BL6NJ_T0086225.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113361911 113362969 - Rrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0086226.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113361911 113362852 - Rrp8 protein_coding retained_intron MGP_C57BL6NJ_T0086227.1 MGP_C57BL6NJ_G0033252.1 mouse_genomes_project 7 113363597 113366109 - Rrp8 protein_coding processed_transcript MGP_C57BL6NJ_T0018873.1 MGP_C57BL6NJ_G0016079.1 mouse_genomes_project 7 120929749 121000007 - 2310014F06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0082905.1 MGP_C57BL6NJ_G0032336.1 mouse_genomes_project 7 26095499 26117391 - MGP_C57BL6NJ_P0082905 Cyp2b23 protein_coding protein_coding MGP_C57BL6NJ_T0081957.1 MGP_C57BL6NJ_G0032025.1 mouse_genomes_project 7 2092621 2096675 + MGP_C57BL6NJ_P0081957 Ccdc106 protein_coding protein_coding MGP_C57BL6NJ_T0085905.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882824 108891053 - MGP_C57BL6NJ_P0085905 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085906.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882829 108890615 - MGP_C57BL6NJ_P0085906 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085907.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882829 108891066 - MGP_C57BL6NJ_P0085907 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085908.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882830 108916796 - MGP_C57BL6NJ_P0085908 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085909.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882830 108916858 - MGP_C57BL6NJ_P0085909 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085910.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882830 108891040 - MGP_C57BL6NJ_P0085910 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085911.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882834 108891024 - MGP_C57BL6NJ_P0085911 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085912.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882841 108916885 - Lrrc51 protein_coding processed_transcript MGP_C57BL6NJ_T0085913.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108882998 108916792 - MGP_C57BL6NJ_P0085913 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0085914.1 MGP_C57BL6NJ_G0033078.1 mouse_genomes_project 7 108883014 108916820 - MGP_C57BL6NJ_P0085914 Lrrc51 protein_coding protein_coding MGP_C57BL6NJ_T0086292.1 MGP_C57BL6NJ_G0033289.1 mouse_genomes_project 7 115518900 115671375 + MGP_C57BL6NJ_P0086292 Ppfibp2 protein_coding protein_coding MGP_C57BL6NJ_T0086293.1 MGP_C57BL6NJ_G0033289.1 mouse_genomes_project 7 115530675 115675063 + MGP_C57BL6NJ_P0086293 Ppfibp2 protein_coding protein_coding MGP_C57BL6NJ_T0100590.1 MGP_C57BL6NJ_G0038636.1 mouse_genomes_project 7 59068152 59068214 + Gm26482 snRNA snRNA MGP_C57BL6NJ_T0083501.1 MGP_C57BL6NJ_G0032480.1 mouse_genomes_project 7 30522745 30525281 + MGP_C57BL6NJ_P0083501 Igflr1 protein_coding protein_coding MGP_C57BL6NJ_T0083502.1 MGP_C57BL6NJ_G0032480.1 mouse_genomes_project 7 30523398 30525278 + MGP_C57BL6NJ_P0083502 Igflr1 protein_coding protein_coding MGP_C57BL6NJ_T0082941.1 MGP_C57BL6NJ_G0032349.1 mouse_genomes_project 7 26651856 26653264 - MGP_C57BL6NJ_P0082941 Mia protein_coding protein_coding MGP_C57BL6NJ_T0082942.1 MGP_C57BL6NJ_G0032349.1 mouse_genomes_project 7 26651858 26653242 - Mia protein_coding retained_intron MGP_C57BL6NJ_T0082943.1 MGP_C57BL6NJ_G0032349.1 mouse_genomes_project 7 26651858 26653272 - MGP_C57BL6NJ_P0082943 Mia protein_coding protein_coding MGP_C57BL6NJ_T0082944.1 MGP_C57BL6NJ_G0032349.1 mouse_genomes_project 7 26652603 26653111 - Mia protein_coding processed_transcript MGP_C57BL6NJ_T0005800.1 MGP_C57BL6NJ_G0004879.1 mouse_genomes_project 7 85046591 85048390 + 5430400D12Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0086128.1 MGP_C57BL6NJ_G0033217.1 mouse_genomes_project 7 112358858 112359815 - MGP_C57BL6NJ_P0086128 Olfr666 protein_coding protein_coding MGP_C57BL6NJ_T0101887.1 MGP_C57BL6NJ_G0039933.1 mouse_genomes_project 7 113265679 113265818 - Gm22504 snoRNA snoRNA MGP_C57BL6NJ_T0085516.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98799297 98869597 - MGP_C57BL6NJ_P0085516 Ankrd42 protein_coding protein_coding MGP_C57BL6NJ_T0085517.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98802610 98869637 - MGP_C57BL6NJ_P0085517 Ankrd42 protein_coding protein_coding MGP_C57BL6NJ_T0085518.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98802626 98869631 - MGP_C57BL6NJ_P0085518 Ankrd42 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085519.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98826398 98832851 - Ankrd42 protein_coding retained_intron MGP_C57BL6NJ_T0085520.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98831656 98869530 - Ankrd42 protein_coding retained_intron MGP_C57BL6NJ_T0085521.1 MGP_C57BL6NJ_G0032995.1 mouse_genomes_project 7 98831908 98869625 - Ankrd42 protein_coding processed_transcript MGP_C57BL6NJ_T0103412.1 MGP_C57BL6NJ_G0041204.1 mouse_genomes_project 7 34525002 34526188 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087288.1 MGP_C57BL6NJ_G0033522.1 mouse_genomes_project 7 136690536 136702481 + MGP_C57BL6NJ_P0087288 Zfp771 protein_coding protein_coding MGP_C57BL6NJ_T0087289.1 MGP_C57BL6NJ_G0033522.1 mouse_genomes_project 7 136691386 136691997 + Zfp771 protein_coding processed_transcript MGP_C57BL6NJ_T0087290.1 MGP_C57BL6NJ_G0033522.1 mouse_genomes_project 7 136691472 136701550 + MGP_C57BL6NJ_P0087290 Zfp771 protein_coding protein_coding MGP_C57BL6NJ_T0103359.1 MGP_C57BL6NJ_G0041152.1 mouse_genomes_project 7 12794085 12795103 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016119.1 MGP_C57BL6NJ_G0014164.1 mouse_genomes_project 7 1354400 1354863 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005482.1 MGP_C57BL6NJ_G0004644.1 mouse_genomes_project 7 155346568 155362579 + Faddos antisense antisense MGP_C57BL6NJ_T0081798.1 MGP_C57BL6NJ_G0031983.1 mouse_genomes_project 7 1106550 1119868 - MGP_C57BL6NJ_P0081798 1700027J19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081799.1 MGP_C57BL6NJ_G0031983.1 mouse_genomes_project 7 1106841 1119547 - MGP_C57BL6NJ_P0081799 1700027J19Rik protein_coding protein_coding MGP_C57BL6NJ_T0081800.1 MGP_C57BL6NJ_G0031983.1 mouse_genomes_project 7 1107066 1119450 - MGP_C57BL6NJ_P0081800 1700027J19Rik protein_coding protein_coding MGP_C57BL6NJ_T0086330.1 MGP_C57BL6NJ_G0033325.1 mouse_genomes_project 7 116930463 116932549 - MGP_C57BL6NJ_P0086330 Olfr516 protein_coding protein_coding MGP_C57BL6NJ_T0082714.1 MGP_C57BL6NJ_G0032292.1 mouse_genomes_project 7 24044279 24049703 - MGP_C57BL6NJ_P0082714 Lypd4 protein_coding protein_coding MGP_C57BL6NJ_T0082715.1 MGP_C57BL6NJ_G0032292.1 mouse_genomes_project 7 24044984 24049494 - MGP_C57BL6NJ_P0082715 Lypd4 protein_coding protein_coding MGP_C57BL6NJ_T0086003.1 MGP_C57BL6NJ_G0033116.1 mouse_genomes_project 7 109953072 109954117 + MGP_C57BL6NJ_P0086003 Olfr570 protein_coding protein_coding MGP_C57BL6NJ_T0084782.1 MGP_C57BL6NJ_G0032820.1 mouse_genomes_project 7 68308252 68337424 - MGP_C57BL6NJ_P0084782 Fan1 protein_coding protein_coding MGP_C57BL6NJ_T0084783.1 MGP_C57BL6NJ_G0032820.1 mouse_genomes_project 7 68324835 68336717 - Fan1 protein_coding retained_intron MGP_C57BL6NJ_T0084784.1 MGP_C57BL6NJ_G0032820.1 mouse_genomes_project 7 68333496 68337439 - Fan1 protein_coding retained_intron MGP_C57BL6NJ_T0084785.1 MGP_C57BL6NJ_G0032820.1 mouse_genomes_project 7 68334255 68337385 - Fan1 protein_coding retained_intron MGP_C57BL6NJ_T0086019.1 MGP_C57BL6NJ_G0033131.1 mouse_genomes_project 7 110259299 110262012 + MGP_C57BL6NJ_P0086019 Olfr592 protein_coding protein_coding MGP_C57BL6NJ_T0086020.1 MGP_C57BL6NJ_G0033131.1 mouse_genomes_project 7 110261073 110262012 + MGP_C57BL6NJ_P0086020 Olfr592 protein_coding protein_coding MGP_C57BL6NJ_T0002346.1 MGP_C57BL6NJ_G0002236.1 mouse_genomes_project 7 35377616 35381497 + TEC TEC MGP_C57BL6NJ_T0085103.1 MGP_C57BL6NJ_G0032877.1 mouse_genomes_project 7 84849490 84857755 - MGP_C57BL6NJ_P0085103 Pex11a protein_coding protein_coding MGP_C57BL6NJ_T0085104.1 MGP_C57BL6NJ_G0032877.1 mouse_genomes_project 7 84850622 84857806 - Pex11a protein_coding processed_transcript MGP_C57BL6NJ_T0085105.1 MGP_C57BL6NJ_G0032877.1 mouse_genomes_project 7 84850783 84852258 - Pex11a protein_coding retained_intron MGP_C57BL6NJ_T0085106.1 MGP_C57BL6NJ_G0032877.1 mouse_genomes_project 7 84851305 84853890 - Pex11a protein_coding retained_intron MGP_C57BL6NJ_T0087938.1 MGP_C57BL6NJ_G0033664.1 mouse_genomes_project 7 150627613 150628671 - MGP_C57BL6NJ_P0087938 Olfr524 protein_coding protein_coding MGP_C57BL6NJ_T0086002.1 MGP_C57BL6NJ_G0033115.1 mouse_genomes_project 7 109938734 109941040 - MGP_C57BL6NJ_P0086002 Olfr569 protein_coding protein_coding MGP_C57BL6NJ_T0009210.1 MGP_C57BL6NJ_G0007415.1 mouse_genomes_project 7 136131485 136133244 + 4930448A20Rik lincRNA lincRNA MGP_C57BL6NJ_T0084671.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215360 59270179 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084672.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215686 59313578 + MGP_C57BL6NJ_P0084672 Cyfip1 protein_coding protein_coding MGP_C57BL6NJ_T0084673.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215687 59254492 + MGP_C57BL6NJ_P0084673 Cyfip1 protein_coding protein_coding MGP_C57BL6NJ_T0084674.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215821 59311474 + MGP_C57BL6NJ_P0084674 Cyfip1 protein_coding protein_coding MGP_C57BL6NJ_T0084675.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215865 59306762 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084676.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59215870 59311447 + MGP_C57BL6NJ_P0084676 Cyfip1 protein_coding protein_coding MGP_C57BL6NJ_T0084677.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59248347 59304936 + MGP_C57BL6NJ_P0084677 Cyfip1 protein_coding protein_coding MGP_C57BL6NJ_T0084678.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59276127 59280223 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084679.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59276456 59311474 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084680.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59277201 59283656 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084681.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59287763 59293104 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0084682.1 MGP_C57BL6NJ_G0032797.1 mouse_genomes_project 7 59309859 59311447 + Cyfip1 protein_coding retained_intron MGP_C57BL6NJ_T0083427.1 MGP_C57BL6NJ_G0032468.1 mouse_genomes_project 7 30363924 30366062 - MGP_C57BL6NJ_P0083427 Hcst protein_coding protein_coding MGP_C57BL6NJ_T0082653.1 MGP_C57BL6NJ_G0032274.1 mouse_genomes_project 7 23432276 23448669 + MGP_C57BL6NJ_P0082653 Kcnn4 protein_coding protein_coding MGP_C57BL6NJ_T0082654.1 MGP_C57BL6NJ_G0032274.1 mouse_genomes_project 7 23432312 23448665 + MGP_C57BL6NJ_P0082654 Kcnn4 protein_coding protein_coding MGP_C57BL6NJ_T0082655.1 MGP_C57BL6NJ_G0032274.1 mouse_genomes_project 7 23432351 23448223 + MGP_C57BL6NJ_P0082655 Kcnn4 protein_coding protein_coding MGP_C57BL6NJ_T0082656.1 MGP_C57BL6NJ_G0032274.1 mouse_genomes_project 7 23445633 23448253 + Kcnn4 protein_coding retained_intron MGP_C57BL6NJ_T0082657.1 MGP_C57BL6NJ_G0032274.1 mouse_genomes_project 7 23446517 23450221 + Kcnn4 protein_coding retained_intron MGP_C57BL6NJ_T0011960.1 MGP_C57BL6NJ_G0010045.1 mouse_genomes_project 7 136465506 136465752 + Gm25333 misc_RNA misc_RNA MGP_C57BL6NJ_T0082728.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087093 24124484 + MGP_C57BL6NJ_P0082728 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082729.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087218 24124481 + MGP_C57BL6NJ_P0082729 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082730.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087232 24124481 + MGP_C57BL6NJ_P0082730 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082731.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087237 24124486 + MGP_C57BL6NJ_P0082731 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082732.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087246 24088598 + Arhgef1 protein_coding processed_transcript MGP_C57BL6NJ_T0082733.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087252 24092106 + MGP_C57BL6NJ_P0082733 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082734.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24087256 24094174 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082735.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24088569 24097710 + MGP_C57BL6NJ_P0082735 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082736.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24088571 24124481 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082737.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24088618 24096859 + MGP_C57BL6NJ_P0082737 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082738.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24088620 24124484 + MGP_C57BL6NJ_P0082738 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082739.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24088653 24120983 + MGP_C57BL6NJ_P0082739 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082740.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24091860 24096399 + MGP_C57BL6NJ_P0082740 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082741.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24096875 24113778 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082742.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24112216 24123998 + MGP_C57BL6NJ_P0082742 Arhgef1 protein_coding protein_coding MGP_C57BL6NJ_T0082743.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24114587 24120271 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082744.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24121139 24122739 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082745.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24121244 24123377 + Arhgef1 protein_coding retained_intron MGP_C57BL6NJ_T0082746.1 MGP_C57BL6NJ_G0032296.1 mouse_genomes_project 7 24121254 24123828 + Arhgef1 protein_coding processed_transcript MGP_C57BL6NJ_T0100565.1 MGP_C57BL6NJ_G0038611.1 mouse_genomes_project 7 1057336 1057507 + Gm23741 snRNA snRNA MGP_C57BL6NJ_T0005379.1 MGP_C57BL6NJ_G0004571.1 mouse_genomes_project 7 53528500 53592882 - Nell1os antisense antisense MGP_C57BL6NJ_T0005380.1 MGP_C57BL6NJ_G0004571.1 mouse_genomes_project 7 53554359 53592969 - Nell1os antisense antisense MGP_C57BL6NJ_T0005381.1 MGP_C57BL6NJ_G0004571.1 mouse_genomes_project 7 53569912 53580519 - Nell1os antisense antisense MGP_C57BL6NJ_T0016246.1 MGP_C57BL6NJ_G0014291.1 mouse_genomes_project 7 43522952 43524554 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087803.1 MGP_C57BL6NJ_G0033626.1 mouse_genomes_project 7 145553240 145556443 + MGP_C57BL6NJ_P0087803 protein_coding protein_coding MGP_C57BL6NJ_T0082141.1 MGP_C57BL6NJ_G0032111.1 mouse_genomes_project 7 11150935 11151886 + MGP_C57BL6NJ_P0082141 Vmn1r88 protein_coding protein_coding MGP_C57BL6NJ_T0005471.1 MGP_C57BL6NJ_G0004636.1 mouse_genomes_project 7 152161612 152165294 - Gm16982 antisense antisense MGP_C57BL6NJ_T0086784.1 MGP_C57BL6NJ_G0033434.1 mouse_genomes_project 7 130029787 130040355 - MGP_C57BL6NJ_P0086784 Igsf6 protein_coding protein_coding MGP_C57BL6NJ_T0005321.1 MGP_C57BL6NJ_G0004528.1 mouse_genomes_project 7 18752068 18754141 + Gm16174 antisense antisense MGP_C57BL6NJ_T0002393.1 MGP_C57BL6NJ_G0002283.1 mouse_genomes_project 7 78079499 78082983 + TEC TEC MGP_C57BL6NJ_T0086028.1 MGP_C57BL6NJ_G0033139.1 mouse_genomes_project 7 110485801 110487861 - MGP_C57BL6NJ_P0086028 Olfr603 protein_coding protein_coding MGP_C57BL6NJ_T0016335.1 MGP_C57BL6NJ_G0014380.1 mouse_genomes_project 7 105114503 105114820 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082048.1 MGP_C57BL6NJ_G0032073.1 mouse_genomes_project 7 8335329 8336226 + MGP_C57BL6NJ_P0082048 Vmn1r70 protein_coding protein_coding MGP_C57BL6NJ_T0083463.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520619 30522673 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083464.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520625 30522444 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083465.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520637 30521800 + MGP_C57BL6NJ_P0083465 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083466.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520639 30522684 + MGP_C57BL6NJ_P0083466 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083467.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520643 30522681 + MGP_C57BL6NJ_P0083467 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083468.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520644 30521926 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083469.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520644 30522670 + MGP_C57BL6NJ_P0083469 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083470.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520647 30521930 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083471.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520648 30521927 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083472.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520654 30522479 + MGP_C57BL6NJ_P0083472 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083473.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520656 30522117 + MGP_C57BL6NJ_P0083473 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083474.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520657 30522483 + MGP_C57BL6NJ_P0083474 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083475.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520658 30521378 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083476.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520660 30522563 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083477.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520662 30525277 + MGP_C57BL6NJ_P0083477 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083478.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520662 30522057 + MGP_C57BL6NJ_P0083478 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083479.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520664 30521820 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083480.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520666 30522683 + MGP_C57BL6NJ_P0083480 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083481.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520667 30521377 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083482.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520668 30522680 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083483.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520668 30525279 + MGP_C57BL6NJ_P0083483 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083484.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520673 30525274 + MGP_C57BL6NJ_P0083484 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083485.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520674 30522498 + MGP_C57BL6NJ_P0083485 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083486.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520674 30522498 + MGP_C57BL6NJ_P0083486 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083487.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520674 30522498 + MGP_C57BL6NJ_P0083487 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083488.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520674 30522498 + MGP_C57BL6NJ_P0083488 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083489.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520676 30522678 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083490.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520676 30521867 + MGP_C57BL6NJ_P0083490 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0083491.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520677 30524718 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083492.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520678 30521795 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083493.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520685 30522491 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083494.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520696 30522683 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083495.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520711 30521674 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083496.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520713 30522498 + MGP_C57BL6NJ_P0083496 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083497.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30520715 30522498 + MGP_C57BL6NJ_P0083497 U2af1l4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083498.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30521144 30521926 + U2af1l4 protein_coding retained_intron MGP_C57BL6NJ_T0083499.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30521189 30521597 + U2af1l4 protein_coding processed_transcript MGP_C57BL6NJ_T0083500.1 MGP_C57BL6NJ_G0032479.1 mouse_genomes_project 7 30521197 30522498 + MGP_C57BL6NJ_P0083500 U2af1l4 protein_coding protein_coding MGP_C57BL6NJ_T0084011.1 MGP_C57BL6NJ_G0032611.1 mouse_genomes_project 7 45922751 45929474 + MGP_C57BL6NJ_P0084011 Klk14 protein_coding protein_coding MGP_C57BL6NJ_T0103511.1 MGP_C57BL6NJ_G0041303.1 mouse_genomes_project 7 91735216 91735593 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082809.1 MGP_C57BL6NJ_G0032309.1 mouse_genomes_project 7 24551965 24554687 + MGP_C57BL6NJ_P0082809 Prr19 protein_coding protein_coding MGP_C57BL6NJ_T0016304.1 MGP_C57BL6NJ_G0014349.1 mouse_genomes_project 7 82258705 82259208 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085852.1 MGP_C57BL6NJ_G0033068.1 mouse_genomes_project 7 108329336 108426479 + MGP_C57BL6NJ_P0085852 protein_coding protein_coding MGP_C57BL6NJ_T0085853.1 MGP_C57BL6NJ_G0033068.1 mouse_genomes_project 7 108329336 108426479 + MGP_C57BL6NJ_P0085853 protein_coding protein_coding MGP_C57BL6NJ_T0085854.1 MGP_C57BL6NJ_G0033068.1 mouse_genomes_project 7 108329354 108426464 + MGP_C57BL6NJ_P0085854 protein_coding protein_coding MGP_C57BL6NJ_T0084463.1 MGP_C57BL6NJ_G0032736.1 mouse_genomes_project 7 48475280 48486738 - Syngr4 protein_coding processed_transcript MGP_C57BL6NJ_T0084464.1 MGP_C57BL6NJ_G0032736.1 mouse_genomes_project 7 48476953 48485822 - MGP_C57BL6NJ_P0084464 Syngr4 protein_coding protein_coding MGP_C57BL6NJ_T0082473.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18205523 18229397 + MGP_C57BL6NJ_P0082473 Ercc1 protein_coding protein_coding MGP_C57BL6NJ_T0082474.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18205846 18228473 + Ercc1 protein_coding retained_intron MGP_C57BL6NJ_T0082475.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18205852 18211285 + Ercc1 protein_coding retained_intron MGP_C57BL6NJ_T0082476.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18205894 18227842 + MGP_C57BL6NJ_P0082476 Ercc1 protein_coding protein_coding MGP_C57BL6NJ_T0082477.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18205905 18210932 + MGP_C57BL6NJ_P0082477 Ercc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082478.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18209269 18225350 + MGP_C57BL6NJ_P0082478 Ercc1 protein_coding protein_coding MGP_C57BL6NJ_T0082479.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18210221 18227349 + Ercc1 protein_coding processed_transcript MGP_C57BL6NJ_T0082480.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18224817 18228178 + Ercc1 protein_coding retained_intron MGP_C57BL6NJ_T0082481.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18225277 18229395 + MGP_C57BL6NJ_P0082481 Ercc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082482.1 MGP_C57BL6NJ_G0032218.1 mouse_genomes_project 7 18227369 18229396 + Ercc1 protein_coding retained_intron MGP_C57BL6NJ_T0102554.1 MGP_C57BL6NJ_G0040394.1 mouse_genomes_project 7 16282924 16292324 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102555.1 MGP_C57BL6NJ_G0040394.1 mouse_genomes_project 7 16282924 16292693 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0016179.1 MGP_C57BL6NJ_G0014224.1 mouse_genomes_project 7 25307653 25307822 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016212.1 MGP_C57BL6NJ_G0014257.1 mouse_genomes_project 7 34264288 34264769 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083271.1 MGP_C57BL6NJ_G0032430.1 mouse_genomes_project 7 29065856 29095493 - MGP_C57BL6NJ_P0083271 Spint2 protein_coding protein_coding MGP_C57BL6NJ_T0083272.1 MGP_C57BL6NJ_G0032430.1 mouse_genomes_project 7 29065856 29095493 - MGP_C57BL6NJ_P0083272 Spint2 protein_coding protein_coding MGP_C57BL6NJ_T0103344.1 MGP_C57BL6NJ_G0041137.1 mouse_genomes_project 7 10400980 10432105 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002458.1 MGP_C57BL6NJ_G0002347.1 mouse_genomes_project 7 138163317 138163929 + TEC TEC MGP_C57BL6NJ_T0103374.1 MGP_C57BL6NJ_G0041167.1 mouse_genomes_project 7 13588172 13588674 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005412.1 MGP_C57BL6NJ_G0004595.1 mouse_genomes_project 7 98973152 98980446 - 4632427E13Rik antisense antisense MGP_C57BL6NJ_T0005413.1 MGP_C57BL6NJ_G0004595.1 mouse_genomes_project 7 98976623 98980455 - 4632427E13Rik antisense antisense MGP_C57BL6NJ_T0005414.1 MGP_C57BL6NJ_G0004595.1 mouse_genomes_project 7 98976644 98980455 - 4632427E13Rik antisense antisense MGP_C57BL6NJ_T0005415.1 MGP_C57BL6NJ_G0004595.1 mouse_genomes_project 7 98979692 98980446 - 4632427E13Rik antisense antisense MGP_C57BL6NJ_T0083424.1 MGP_C57BL6NJ_G0032465.1 mouse_genomes_project 7 30258604 30260337 + MGP_C57BL6NJ_P0083424 E130208F15Rik protein_coding protein_coding MGP_C57BL6NJ_T0005420.1 MGP_C57BL6NJ_G0004600.1 mouse_genomes_project 7 103366566 103370995 - Gm44633 antisense antisense MGP_C57BL6NJ_T0103549.1 MGP_C57BL6NJ_G0041341.1 mouse_genomes_project 7 114430036 114437177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011119.1 MGP_C57BL6NJ_G0009204.1 mouse_genomes_project 7 45360798 45360908 + Gm24938 miRNA miRNA MGP_C57BL6NJ_T0103459.1 MGP_C57BL6NJ_G0041251.1 mouse_genomes_project 7 50044533 50045451 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087662.1 MGP_C57BL6NJ_G0033591.1 mouse_genomes_project 7 140931347 140941522 - MGP_C57BL6NJ_P0087662 4933402N03Rik protein_coding protein_coding MGP_C57BL6NJ_T0005373.1 MGP_C57BL6NJ_G0004566.1 mouse_genomes_project 7 46773417 46774142 + Gm44780 antisense antisense MGP_C57BL6NJ_T0016255.1 MGP_C57BL6NJ_G0014300.1 mouse_genomes_project 7 45087289 45087773 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086185.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113225273 113256854 - MGP_C57BL6NJ_P0086185 Trim3 protein_coding protein_coding MGP_C57BL6NJ_T0086186.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113231280 113256906 - MGP_C57BL6NJ_P0086186 Trim3 protein_coding protein_coding MGP_C57BL6NJ_T0086187.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113231458 113256883 - MGP_C57BL6NJ_P0086187 Trim3 protein_coding protein_coding MGP_C57BL6NJ_T0086188.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113231949 113232667 - Trim3 protein_coding retained_intron MGP_C57BL6NJ_T0086189.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113233118 113234217 - Trim3 protein_coding retained_intron MGP_C57BL6NJ_T0086190.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113237841 113238837 - Trim3 protein_coding retained_intron MGP_C57BL6NJ_T0086191.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113239594 113256871 - MGP_C57BL6NJ_P0086191 Trim3 protein_coding protein_coding MGP_C57BL6NJ_T0086192.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113239916 113256917 - Trim3 protein_coding processed_transcript MGP_C57BL6NJ_T0086193.1 MGP_C57BL6NJ_G0033248.1 mouse_genomes_project 7 113240193 113256831 - MGP_C57BL6NJ_P0086193 Trim3 protein_coding protein_coding MGP_C57BL6NJ_T0016305.1 MGP_C57BL6NJ_G0014350.1 mouse_genomes_project 7 84493793 84494001 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016283.1 MGP_C57BL6NJ_G0014328.1 mouse_genomes_project 7 65302769 65303228 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086339.1 MGP_C57BL6NJ_G0033331.1 mouse_genomes_project 7 117113477 117132545 + MGP_C57BL6NJ_P0086339 Tub protein_coding protein_coding MGP_C57BL6NJ_T0086340.1 MGP_C57BL6NJ_G0033331.1 mouse_genomes_project 7 117129510 117131648 + Tub protein_coding retained_intron MGP_C57BL6NJ_T0100624.1 MGP_C57BL6NJ_G0038670.1 mouse_genomes_project 7 136500631 136500738 + Gm22747 snRNA snRNA MGP_C57BL6NJ_T0082041.1 MGP_C57BL6NJ_G0032068.1 mouse_genomes_project 7 7955501 7957025 - MGP_C57BL6NJ_P0082041 Vmn1r66 protein_coding protein_coding MGP_C57BL6NJ_T0086680.1 MGP_C57BL6NJ_G0033403.1 mouse_genomes_project 7 128229890 128251247 - MGP_C57BL6NJ_P0086680 Gp2 protein_coding protein_coding MGP_C57BL6NJ_T0086520.1 MGP_C57BL6NJ_G0033375.1 mouse_genomes_project 7 122671395 122684722 - MGP_C57BL6NJ_P0086520 Psma1 protein_coding protein_coding MGP_C57BL6NJ_T0086521.1 MGP_C57BL6NJ_G0033375.1 mouse_genomes_project 7 122671584 122684630 - Psma1 protein_coding processed_transcript MGP_C57BL6NJ_T0086522.1 MGP_C57BL6NJ_G0033375.1 mouse_genomes_project 7 122677278 122684658 - Psma1 protein_coding retained_intron MGP_C57BL6NJ_T0086523.1 MGP_C57BL6NJ_G0033375.1 mouse_genomes_project 7 122682378 122684647 - Psma1 protein_coding retained_intron MGP_C57BL6NJ_T0085805.1 MGP_C57BL6NJ_G0033063.1 mouse_genomes_project 7 107866073 107881718 - MGP_C57BL6NJ_P0085805 P2ry2 protein_coding protein_coding MGP_C57BL6NJ_T0085806.1 MGP_C57BL6NJ_G0033063.1 mouse_genomes_project 7 107866728 107881703 - MGP_C57BL6NJ_P0085806 P2ry2 protein_coding protein_coding MGP_C57BL6NJ_T0082184.1 MGP_C57BL6NJ_G0032127.1 mouse_genomes_project 7 12588611 12617369 - MGP_C57BL6NJ_P0082184 Sult2a7 protein_coding protein_coding MGP_C57BL6NJ_T0016269.1 MGP_C57BL6NJ_G0014314.1 mouse_genomes_project 7 55969586 55969850 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085471.1 MGP_C57BL6NJ_G0032983.1 mouse_genomes_project 7 95905473 95930943 - MGP_C57BL6NJ_P0085471 l7Rn6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085472.1 MGP_C57BL6NJ_G0032983.1 mouse_genomes_project 7 95905690 95930961 - MGP_C57BL6NJ_P0085472 l7Rn6 protein_coding protein_coding MGP_C57BL6NJ_T0085473.1 MGP_C57BL6NJ_G0032983.1 mouse_genomes_project 7 95905723 95930875 - MGP_C57BL6NJ_P0085473 l7Rn6 protein_coding protein_coding MGP_C57BL6NJ_T0085474.1 MGP_C57BL6NJ_G0032983.1 mouse_genomes_project 7 95906342 95912456 - l7Rn6 protein_coding retained_intron MGP_C57BL6NJ_T0085475.1 MGP_C57BL6NJ_G0032983.1 mouse_genomes_project 7 95920349 95931042 - l7Rn6 protein_coding processed_transcript MGP_C57BL6NJ_T0086322.1 MGP_C57BL6NJ_G0033317.1 mouse_genomes_project 7 116663104 116664112 + MGP_C57BL6NJ_P0086322 Olfr506 protein_coding protein_coding MGP_C57BL6NJ_T0016317.1 MGP_C57BL6NJ_G0014362.1 mouse_genomes_project 7 92757979 92763141 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084433.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48290746 48303313 - MGP_C57BL6NJ_P0084433 Sult2b1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084434.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48290766 48334384 - MGP_C57BL6NJ_P0084434 Sult2b1 protein_coding protein_coding MGP_C57BL6NJ_T0084435.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48290783 48303049 - MGP_C57BL6NJ_P0084435 Sult2b1 protein_coding protein_coding MGP_C57BL6NJ_T0084436.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48295930 48303049 - MGP_C57BL6NJ_P0084436 Sult2b1 protein_coding protein_coding MGP_C57BL6NJ_T0084437.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48295964 48303312 - Sult2b1 protein_coding processed_transcript MGP_C57BL6NJ_T0084438.1 MGP_C57BL6NJ_G0032729.1 mouse_genomes_project 7 48333245 48334302 - Sult2b1 protein_coding processed_transcript MGP_C57BL6NJ_T0011083.1 MGP_C57BL6NJ_G0009168.1 mouse_genomes_project 7 105289 105358 + Mir295 miRNA miRNA MGP_C57BL6NJ_T0084290.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47741891 47747088 - MGP_C57BL6NJ_P0084290 Cd37 protein_coding protein_coding MGP_C57BL6NJ_T0084291.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47741896 47747063 - Cd37 protein_coding retained_intron MGP_C57BL6NJ_T0084292.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47741900 47747363 - MGP_C57BL6NJ_P0084292 Cd37 protein_coding protein_coding MGP_C57BL6NJ_T0084293.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47741902 47743759 - Cd37 protein_coding processed_transcript MGP_C57BL6NJ_T0084294.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47742150 47745347 - Cd37 protein_coding processed_transcript MGP_C57BL6NJ_T0084295.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47742429 47747122 - MGP_C57BL6NJ_P0084295 Cd37 protein_coding protein_coding MGP_C57BL6NJ_T0084296.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47742609 47743718 - Cd37 protein_coding processed_transcript MGP_C57BL6NJ_T0084297.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47742997 47747305 - MGP_C57BL6NJ_P0084297 Cd37 protein_coding protein_coding MGP_C57BL6NJ_T0084298.1 MGP_C57BL6NJ_G0032694.1 mouse_genomes_project 7 47745981 47747044 - Cd37 protein_coding retained_intron MGP_C57BL6NJ_T0009008.1 MGP_C57BL6NJ_G0007276.1 mouse_genomes_project 7 30898465 30900945 + lincRNA lincRNA MGP_C57BL6NJ_T0016366.1 MGP_C57BL6NJ_G0014411.1 mouse_genomes_project 7 134339788 134340445 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088159.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151989710 151993866 + MGP_C57BL6NJ_P0088159 Rplp2 protein_coding protein_coding MGP_C57BL6NJ_T0088160.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151989971 151990957 + Rplp2 protein_coding retained_intron MGP_C57BL6NJ_T0088161.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151990009 151991368 + Rplp2 protein_coding retained_intron MGP_C57BL6NJ_T0088162.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151990052 151993631 + MGP_C57BL6NJ_P0088162 Rplp2 protein_coding protein_coding MGP_C57BL6NJ_T0088163.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151990190 151993631 + MGP_C57BL6NJ_P0088163 Rplp2 protein_coding protein_coding MGP_C57BL6NJ_T0088164.1 MGP_C57BL6NJ_G0033725.1 mouse_genomes_project 7 151993102 151993630 + Rplp2 protein_coding processed_transcript MGP_C57BL6NJ_T0016280.1 MGP_C57BL6NJ_G0014325.1 mouse_genomes_project 7 60306094 60306697 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018861.1 MGP_C57BL6NJ_G0016072.1 mouse_genomes_project 7 86333316 86343073 + Platr32 processed_transcript processed_transcript MGP_C57BL6NJ_T0087949.1 MGP_C57BL6NJ_G0033673.1 mouse_genomes_project 7 150902587 150903677 + MGP_C57BL6NJ_P0087949 Olfr533 protein_coding protein_coding MGP_C57BL6NJ_T0084003.1 MGP_C57BL6NJ_G0032607.1 mouse_genomes_project 7 45831279 45843035 + MGP_C57BL6NJ_P0084003 Zfp819 protein_coding protein_coding MGP_C57BL6NJ_T0084004.1 MGP_C57BL6NJ_G0032607.1 mouse_genomes_project 7 45831319 45837527 + MGP_C57BL6NJ_P0084004 Zfp819 protein_coding protein_coding MGP_C57BL6NJ_T0084005.1 MGP_C57BL6NJ_G0032607.1 mouse_genomes_project 7 45831335 45843104 + MGP_C57BL6NJ_P0084005 Zfp819 protein_coding protein_coding MGP_C57BL6NJ_T0084006.1 MGP_C57BL6NJ_G0032607.1 mouse_genomes_project 7 45834017 45842737 + MGP_C57BL6NJ_P0084006 Zfp819 protein_coding protein_coding MGP_C57BL6NJ_T0087690.1 MGP_C57BL6NJ_G0033601.1 mouse_genomes_project 7 141386928 141398004 + MGP_C57BL6NJ_P0087690 Hmx2 protein_coding protein_coding MGP_C57BL6NJ_T0087691.1 MGP_C57BL6NJ_G0033601.1 mouse_genomes_project 7 141395475 141398004 + MGP_C57BL6NJ_P0087691 Hmx2 protein_coding protein_coding MGP_C57BL6NJ_T0016262.1 MGP_C57BL6NJ_G0014307.1 mouse_genomes_project 7 46668521 46669449 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082162.1 MGP_C57BL6NJ_G0032115.1 mouse_genomes_project 7 11302908 11352591 + MGP_C57BL6NJ_P0082162 Pla2g4c protein_coding protein_coding MGP_C57BL6NJ_T0082163.1 MGP_C57BL6NJ_G0032115.1 mouse_genomes_project 7 11303920 11353909 + MGP_C57BL6NJ_P0082163 Pla2g4c protein_coding protein_coding MGP_C57BL6NJ_T0082164.1 MGP_C57BL6NJ_G0032115.1 mouse_genomes_project 7 11306416 11307597 + Pla2g4c protein_coding processed_transcript MGP_C57BL6NJ_T0082165.1 MGP_C57BL6NJ_G0032115.1 mouse_genomes_project 7 11306863 11353913 + MGP_C57BL6NJ_P0082165 Pla2g4c protein_coding protein_coding MGP_C57BL6NJ_T0101908.1 MGP_C57BL6NJ_G0039954.1 mouse_genomes_project 7 154203804 154203931 - Gm23297 snoRNA snoRNA MGP_C57BL6NJ_T0082383.1 MGP_C57BL6NJ_G0032192.1 mouse_genomes_project 7 17647365 17672219 + MGP_C57BL6NJ_P0082383 Mill2 protein_coding protein_coding MGP_C57BL6NJ_T0082384.1 MGP_C57BL6NJ_G0032192.1 mouse_genomes_project 7 17647365 17672219 + MGP_C57BL6NJ_P0082384 Mill2 protein_coding protein_coding MGP_C57BL6NJ_T0082385.1 MGP_C57BL6NJ_G0032192.1 mouse_genomes_project 7 17647388 17678486 + MGP_C57BL6NJ_P0082385 Mill2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082386.1 MGP_C57BL6NJ_G0032192.1 mouse_genomes_project 7 17647400 17668756 + Mill2 protein_coding processed_transcript MGP_C57BL6NJ_T0083938.1 MGP_C57BL6NJ_G0032588.1 mouse_genomes_project 7 44696219 44827096 - MGP_C57BL6NJ_P0083938 Gm2381 protein_coding protein_coding MGP_C57BL6NJ_T0088340.1 MGP_C57BL6NJ_G0033759.1 mouse_genomes_project 7 153610333 153612776 - MGP_C57BL6NJ_P0088340 Ascl2 protein_coding protein_coding MGP_C57BL6NJ_T0088341.1 MGP_C57BL6NJ_G0033759.1 mouse_genomes_project 7 153610340 153612776 - MGP_C57BL6NJ_P0088341 Ascl2 protein_coding protein_coding MGP_C57BL6NJ_T0016190.1 MGP_C57BL6NJ_G0014235.1 mouse_genomes_project 7 31256390 31257177 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082339.1 MGP_C57BL6NJ_G0032170.1 mouse_genomes_project 7 15458487 15463416 + MGP_C57BL6NJ_P0082339 Pnmal1 protein_coding protein_coding MGP_C57BL6NJ_T0083331.1 MGP_C57BL6NJ_G0032443.1 mouse_genomes_project 7 29818802 29821174 + MGP_C57BL6NJ_P0083331 protein_coding protein_coding MGP_C57BL6NJ_T0103547.1 MGP_C57BL6NJ_G0041339.1 mouse_genomes_project 7 114191789 114198411 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009030.1 MGP_C57BL6NJ_G0007297.1 mouse_genomes_project 7 39430632 39449369 + Gm44635 lincRNA lincRNA MGP_C57BL6NJ_T0083430.1 MGP_C57BL6NJ_G0032470.1 mouse_genomes_project 7 30383475 30394089 - MGP_C57BL6NJ_P0083430 Aplp1 protein_coding protein_coding MGP_C57BL6NJ_T0005400.1 MGP_C57BL6NJ_G0004586.1 mouse_genomes_project 7 85217960 85233806 - Gm21057 antisense antisense MGP_C57BL6NJ_T0005401.1 MGP_C57BL6NJ_G0004586.1 mouse_genomes_project 7 85232333 85233826 - Gm21057 antisense antisense MGP_C57BL6NJ_T0103444.1 MGP_C57BL6NJ_G0041236.1 mouse_genomes_project 7 46338924 46339141 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083904.1 MGP_C57BL6NJ_G0032573.1 mouse_genomes_project 7 43189586 43242761 - MGP_C57BL6NJ_P0083904 Vmn2r57 protein_coding protein_coding MGP_C57BL6NJ_T0101846.1 MGP_C57BL6NJ_G0039892.1 mouse_genomes_project 7 14323205 14323314 - Snord23 snoRNA snoRNA MGP_C57BL6NJ_T0018834.1 MGP_C57BL6NJ_G0016064.1 mouse_genomes_project 7 59357946 59358870 + Gm15888 processed_transcript processed_transcript MGP_C57BL6NJ_T0085491.1 MGP_C57BL6NJ_G0032989.1 mouse_genomes_project 7 96475621 96477970 + MGP_C57BL6NJ_P0085491 Ccdc89 protein_coding protein_coding MGP_C57BL6NJ_T0082217.1 MGP_C57BL6NJ_G0032139.1 mouse_genomes_project 7 14322270 14332387 - MGP_C57BL6NJ_P0082217 Gltscr2 protein_coding protein_coding MGP_C57BL6NJ_T0082218.1 MGP_C57BL6NJ_G0032139.1 mouse_genomes_project 7 14322281 14332051 - Gltscr2 protein_coding retained_intron MGP_C57BL6NJ_T0082219.1 MGP_C57BL6NJ_G0032139.1 mouse_genomes_project 7 14328318 14332356 - Gltscr2 protein_coding processed_transcript MGP_C57BL6NJ_T0087692.1 MGP_C57BL6NJ_G0033602.1 mouse_genomes_project 7 141404322 141417100 + MGP_C57BL6NJ_P0087692 Bub3 protein_coding protein_coding MGP_C57BL6NJ_T0082583.1 MGP_C57BL6NJ_G0032245.1 mouse_genomes_project 7 18795601 18804666 + MGP_C57BL6NJ_P0082583 Gm19345 protein_coding protein_coding MGP_C57BL6NJ_T0087509.1 MGP_C57BL6NJ_G0033567.1 mouse_genomes_project 7 137721683 137804624 + MGP_C57BL6NJ_P0087509 Itgad protein_coding protein_coding MGP_C57BL6NJ_T0087510.1 MGP_C57BL6NJ_G0033567.1 mouse_genomes_project 7 137727294 137785288 + MGP_C57BL6NJ_P0087510 Itgad protein_coding protein_coding MGP_C57BL6NJ_T0087511.1 MGP_C57BL6NJ_G0033567.1 mouse_genomes_project 7 137748578 137785291 + MGP_C57BL6NJ_P0087511 Itgad protein_coding protein_coding MGP_C57BL6NJ_T0087512.1 MGP_C57BL6NJ_G0033567.1 mouse_genomes_project 7 137748587 137785288 + MGP_C57BL6NJ_P0087512 Itgad protein_coding protein_coding MGP_C57BL6NJ_T0087513.1 MGP_C57BL6NJ_G0033567.1 mouse_genomes_project 7 137779055 137785291 + MGP_C57BL6NJ_P0087513 Itgad protein_coding protein_coding MGP_C57BL6NJ_T0009046.1 MGP_C57BL6NJ_G0007306.1 mouse_genomes_project 7 42869899 42870300 - Gm44839 lincRNA lincRNA MGP_C57BL6NJ_T0009159.1 MGP_C57BL6NJ_G0007383.1 mouse_genomes_project 7 100375272 100706805 + lincRNA lincRNA MGP_C57BL6NJ_T0009160.1 MGP_C57BL6NJ_G0007383.1 mouse_genomes_project 7 100375333 101129506 + lincRNA lincRNA MGP_C57BL6NJ_T0083940.1 MGP_C57BL6NJ_G0032590.1 mouse_genomes_project 7 44901629 44958910 - MGP_C57BL6NJ_P0083940 Zfp975 protein_coding protein_coding MGP_C57BL6NJ_T0081687.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 513818 516773 + MGP_C57BL6NJ_P0081687 Ndufa3 protein_coding protein_coding MGP_C57BL6NJ_T0081688.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 513825 516598 + Ndufa3 protein_coding retained_intron MGP_C57BL6NJ_T0081689.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 513830 514165 + Ndufa3 protein_coding retained_intron MGP_C57BL6NJ_T0081690.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 513831 516574 + MGP_C57BL6NJ_P0081690 Ndufa3 protein_coding protein_coding MGP_C57BL6NJ_T0081691.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 513836 516609 + MGP_C57BL6NJ_P0081691 Ndufa3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081692.1 MGP_C57BL6NJ_G0031965.1 mouse_genomes_project 7 514062 516531 + MGP_C57BL6NJ_P0081692 Ndufa3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086442.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119269883 119299697 + MGP_C57BL6NJ_P0086442 Ctr9 protein_coding protein_coding MGP_C57BL6NJ_T0086443.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119269927 119290995 + Ctr9 protein_coding retained_intron MGP_C57BL6NJ_T0086444.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119269945 119272495 + Ctr9 protein_coding retained_intron MGP_C57BL6NJ_T0086445.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119271147 119275742 + Ctr9 protein_coding processed_transcript MGP_C57BL6NJ_T0086446.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119275721 119277062 + Ctr9 protein_coding retained_intron MGP_C57BL6NJ_T0086447.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119289653 119290166 + Ctr9 protein_coding retained_intron MGP_C57BL6NJ_T0086448.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119289653 119291319 + Ctr9 protein_coding retained_intron MGP_C57BL6NJ_T0086449.1 MGP_C57BL6NJ_G0033357.1 mouse_genomes_project 7 119294332 119295710 + Ctr9 protein_coding processed_transcript MGP_C57BL6NJ_T0083683.1 MGP_C57BL6NJ_G0032519.1 mouse_genomes_project 7 31789151 31790484 + MGP_C57BL6NJ_P0083683 protein_coding protein_coding MGP_C57BL6NJ_T0103395.1 MGP_C57BL6NJ_G0041187.1 mouse_genomes_project 7 31560597 31560982 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103541.1 MGP_C57BL6NJ_G0041333.1 mouse_genomes_project 7 112083887 112084262 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100596.1 MGP_C57BL6NJ_G0038642.1 mouse_genomes_project 7 80484399 80484484 + Gm25282 snRNA snRNA MGP_C57BL6NJ_T0016238.1 MGP_C57BL6NJ_G0014283.1 mouse_genomes_project 7 42760081 42760265 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099520.1 MGP_C57BL6NJ_G0037572.1 mouse_genomes_project 7 155242102 155242563 - Gm14376 sense_intronic sense_intronic MGP_C57BL6NJ_T0087670.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141190862 141203026 + MGP_C57BL6NJ_P0087670 Pstk protein_coding protein_coding MGP_C57BL6NJ_T0087671.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141190867 141203023 + MGP_C57BL6NJ_P0087671 Pstk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087672.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141190878 141193985 + Pstk protein_coding processed_transcript MGP_C57BL6NJ_T0087673.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141192756 141203020 + Pstk protein_coding retained_intron MGP_C57BL6NJ_T0087674.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141199111 141203023 + Pstk protein_coding processed_transcript MGP_C57BL6NJ_T0087675.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141199443 141202914 + Pstk protein_coding retained_intron MGP_C57BL6NJ_T0087676.1 MGP_C57BL6NJ_G0033597.1 mouse_genomes_project 7 141199684 141203019 + Pstk protein_coding processed_transcript MGP_C57BL6NJ_T0009004.1 MGP_C57BL6NJ_G0007272.1 mouse_genomes_project 7 28847857 28857367 + Gm26604 lincRNA lincRNA MGP_C57BL6NJ_T0011085.1 MGP_C57BL6NJ_G0009170.1 mouse_genomes_project 7 555815 555901 + Mir3572 miRNA miRNA MGP_C57BL6NJ_T0085236.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85806442 85912157 - MGP_C57BL6NJ_P0085236 Crtc3 protein_coding protein_coding MGP_C57BL6NJ_T0085237.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85812683 85832368 - MGP_C57BL6NJ_P0085237 Crtc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085238.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85815574 85820469 - Crtc3 protein_coding retained_intron MGP_C57BL6NJ_T0085239.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85815636 85851845 - MGP_C57BL6NJ_P0085239 Crtc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085240.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85840542 85851926 - Crtc3 protein_coding retained_intron MGP_C57BL6NJ_T0085241.1 MGP_C57BL6NJ_G0032900.1 mouse_genomes_project 7 85895422 85912157 - Crtc3 protein_coding retained_intron MGP_C57BL6NJ_T0083769.1 MGP_C57BL6NJ_G0032545.1 mouse_genomes_project 7 36099246 36109397 - MGP_C57BL6NJ_P0083769 Cebpg protein_coding protein_coding MGP_C57BL6NJ_T0083770.1 MGP_C57BL6NJ_G0032545.1 mouse_genomes_project 7 36102720 36104330 - Cebpg protein_coding retained_intron MGP_C57BL6NJ_T0083771.1 MGP_C57BL6NJ_G0032545.1 mouse_genomes_project 7 36103139 36108764 - MGP_C57BL6NJ_P0083771 Cebpg protein_coding protein_coding MGP_C57BL6NJ_T0083772.1 MGP_C57BL6NJ_G0032545.1 mouse_genomes_project 7 36103689 36108807 - Cebpg protein_coding processed_transcript MGP_C57BL6NJ_T0002378.1 MGP_C57BL6NJ_G0002268.1 mouse_genomes_project 7 59351538 59352862 - TEC TEC MGP_C57BL6NJ_T0002448.1 MGP_C57BL6NJ_G0002337.1 mouse_genomes_project 7 135752719 135754607 + TEC TEC MGP_C57BL6NJ_T0016189.1 MGP_C57BL6NJ_G0014234.1 mouse_genomes_project 7 30683929 30684457 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002369.1 MGP_C57BL6NJ_G0002259.1 mouse_genomes_project 7 52132294 52135874 + TEC TEC MGP_C57BL6NJ_T0002341.1 MGP_C57BL6NJ_G0002231.1 mouse_genomes_project 7 17816103 17819324 - TEC TEC MGP_C57BL6NJ_T0083968.1 MGP_C57BL6NJ_G0032598.1 mouse_genomes_project 7 45648453 45651006 + MGP_C57BL6NJ_P0083968 Cldnd2 protein_coding protein_coding MGP_C57BL6NJ_T0083969.1 MGP_C57BL6NJ_G0032598.1 mouse_genomes_project 7 45649247 45650971 + MGP_C57BL6NJ_P0083969 Cldnd2 protein_coding protein_coding MGP_C57BL6NJ_T0083406.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251671 30253522 + Syne4 protein_coding processed_transcript MGP_C57BL6NJ_T0083407.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251680 30255911 + MGP_C57BL6NJ_P0083407 Syne4 protein_coding protein_coding MGP_C57BL6NJ_T0083408.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251735 30252574 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083409.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251744 30253956 + MGP_C57BL6NJ_P0083409 Syne4 protein_coding protein_coding MGP_C57BL6NJ_T0083410.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251749 30253725 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083411.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251752 30253950 + MGP_C57BL6NJ_P0083411 Syne4 protein_coding protein_coding MGP_C57BL6NJ_T0083412.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30251780 30255911 + MGP_C57BL6NJ_P0083412 Syne4 protein_coding protein_coding MGP_C57BL6NJ_T0083413.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30252014 30253211 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083414.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30252174 30254215 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083415.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30252884 30253732 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083416.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30253636 30255911 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083417.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30253806 30255907 + MGP_C57BL6NJ_P0083417 Syne4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083418.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30253851 30255910 + MGP_C57BL6NJ_P0083418 Syne4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083419.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30253852 30255905 + MGP_C57BL6NJ_P0083419 Syne4 protein_coding protein_coding MGP_C57BL6NJ_T0083420.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30253884 30255909 + MGP_C57BL6NJ_P0083420 Syne4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083421.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30254104 30255905 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0083422.1 MGP_C57BL6NJ_G0032463.1 mouse_genomes_project 7 30254630 30255905 + Syne4 protein_coding retained_intron MGP_C57BL6NJ_T0100609.1 MGP_C57BL6NJ_G0038655.1 mouse_genomes_project 7 117907862 117907969 - Gm22822 snRNA snRNA MGP_C57BL6NJ_T0086744.1 MGP_C57BL6NJ_G0033423.1 mouse_genomes_project 7 129289748 129370982 + MGP_C57BL6NJ_P0086744 Abca16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086745.1 MGP_C57BL6NJ_G0033423.1 mouse_genomes_project 7 129308506 129438392 + MGP_C57BL6NJ_P0086745 Abca16 protein_coding protein_coding MGP_C57BL6NJ_T0086746.1 MGP_C57BL6NJ_G0033423.1 mouse_genomes_project 7 129308506 129438392 + MGP_C57BL6NJ_P0086746 Abca16 protein_coding protein_coding MGP_C57BL6NJ_T0086747.1 MGP_C57BL6NJ_G0033423.1 mouse_genomes_project 7 129366704 129380101 + Abca16 protein_coding retained_intron MGP_C57BL6NJ_T0009231.1 MGP_C57BL6NJ_G0007428.1 mouse_genomes_project 7 139322204 139400161 + Gm44868 lincRNA lincRNA MGP_C57BL6NJ_T0009232.1 MGP_C57BL6NJ_G0007428.1 mouse_genomes_project 7 139322292 139325961 + Gm44868 lincRNA lincRNA MGP_C57BL6NJ_T0018881.1 MGP_C57BL6NJ_G0016083.1 mouse_genomes_project 7 136160840 136169535 - Gm9967 processed_transcript antisense MGP_C57BL6NJ_T0018882.1 MGP_C57BL6NJ_G0016083.1 mouse_genomes_project 7 136166450 136169523 - Gm9967 processed_transcript antisense MGP_C57BL6NJ_T0018883.1 MGP_C57BL6NJ_G0016083.1 mouse_genomes_project 7 136167721 136169575 - Gm9967 processed_transcript retained_intron MGP_C57BL6NJ_T0088406.1 MGP_C57BL6NJ_G0033774.1 mouse_genomes_project 7 154490453 154493736 - MGP_C57BL6NJ_P0088406 Mrgprg protein_coding protein_coding MGP_C57BL6NJ_T0009164.1 MGP_C57BL6NJ_G0007387.1 mouse_genomes_project 7 105348090 105370065 - Gm15506 lincRNA lincRNA MGP_C57BL6NJ_T0085064.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84528770 84550124 - MGP_C57BL6NJ_P0085064 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085065.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84531920 84534174 - MGP_C57BL6NJ_P0085065 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085066.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84531921 84537620 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085067.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84531921 84549949 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085068.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84531921 84533157 - MGP_C57BL6NJ_P0085068 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085069.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84532102 84549942 - MGP_C57BL6NJ_P0085069 Polg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085070.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84532116 84549960 - MGP_C57BL6NJ_P0085070 Polg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085071.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84532705 84534620 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085072.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84534126 84534462 - MGP_C57BL6NJ_P0085072 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085073.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84534139 84536326 - MGP_C57BL6NJ_P0085073 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085074.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84534469 84536880 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085075.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84536485 84538605 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085076.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84537070 84537934 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085077.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84538025 84541981 - MGP_C57BL6NJ_P0085077 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085078.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84538609 84542336 - MGP_C57BL6NJ_P0085078 Polg protein_coding protein_coding MGP_C57BL6NJ_T0085079.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84542061 84544344 - Polg protein_coding processed_transcript MGP_C57BL6NJ_T0085080.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84547677 84549956 - Polg protein_coding retained_intron MGP_C57BL6NJ_T0085081.1 MGP_C57BL6NJ_G0032872.1 mouse_genomes_project 7 84548656 84549832 - MGP_C57BL6NJ_P0085081 Polg protein_coding protein_coding MGP_C57BL6NJ_T0016289.1 MGP_C57BL6NJ_G0014334.1 mouse_genomes_project 7 72008156 72009161 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016389.1 MGP_C57BL6NJ_G0014434.1 mouse_genomes_project 7 144767193 144768516 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086313.1 MGP_C57BL6NJ_G0033308.1 mouse_genomes_project 7 116290542 116291487 - MGP_C57BL6NJ_P0086313 Olfr488 protein_coding protein_coding MGP_C57BL6NJ_T0100574.1 MGP_C57BL6NJ_G0038620.1 mouse_genomes_project 7 17553704 17553811 - Gm24464 snRNA snRNA MGP_C57BL6NJ_T0083080.1 MGP_C57BL6NJ_G0032383.1 mouse_genomes_project 7 27819682 27827508 + MGP_C57BL6NJ_P0083080 Dyrk1b protein_coding protein_coding MGP_C57BL6NJ_T0083081.1 MGP_C57BL6NJ_G0032383.1 mouse_genomes_project 7 27819707 27827137 + MGP_C57BL6NJ_P0083081 Dyrk1b protein_coding protein_coding MGP_C57BL6NJ_T0083082.1 MGP_C57BL6NJ_G0032383.1 mouse_genomes_project 7 27820479 27827508 + MGP_C57BL6NJ_P0083082 Dyrk1b protein_coding protein_coding MGP_C57BL6NJ_T0083083.1 MGP_C57BL6NJ_G0032383.1 mouse_genomes_project 7 27820529 27827157 + MGP_C57BL6NJ_P0083083 Dyrk1b protein_coding protein_coding MGP_C57BL6NJ_T0103349.1 MGP_C57BL6NJ_G0041142.1 mouse_genomes_project 7 12245156 12246561 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018789.1 MGP_C57BL6NJ_G0016045.1 mouse_genomes_project 7 2086625 2093007 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018790.1 MGP_C57BL6NJ_G0016045.1 mouse_genomes_project 7 2086626 2092922 - processed_transcript processed_transcript MGP_C57BL6NJ_T0087366.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137095142 137111183 + MGP_C57BL6NJ_P0087366 Rnf40 protein_coding protein_coding MGP_C57BL6NJ_T0087367.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137095294 137109978 + MGP_C57BL6NJ_P0087367 Rnf40 protein_coding protein_coding MGP_C57BL6NJ_T0087368.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137095294 137109969 + MGP_C57BL6NJ_P0087368 Rnf40 protein_coding protein_coding MGP_C57BL6NJ_T0087369.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137098828 137101138 + Rnf40 protein_coding retained_intron MGP_C57BL6NJ_T0087370.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137099289 137102644 + Rnf40 protein_coding retained_intron MGP_C57BL6NJ_T0087371.1 MGP_C57BL6NJ_G0033539.1 mouse_genomes_project 7 137103224 137106987 + Rnf40 protein_coding retained_intron MGP_C57BL6NJ_T0084638.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 54995360 55134263 + MGP_C57BL6NJ_P0084638 Gas2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084639.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 54995772 55105234 + MGP_C57BL6NJ_P0084639 Gas2 protein_coding protein_coding MGP_C57BL6NJ_T0084640.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 54997249 54997743 + Gas2 protein_coding retained_intron MGP_C57BL6NJ_T0084641.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 55016660 55133741 + MGP_C57BL6NJ_P0084641 Gas2 protein_coding protein_coding MGP_C57BL6NJ_T0084642.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 55016743 55133746 + MGP_C57BL6NJ_P0084642 Gas2 protein_coding protein_coding MGP_C57BL6NJ_T0084643.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 55018024 55083005 + MGP_C57BL6NJ_P0084643 Gas2 protein_coding protein_coding MGP_C57BL6NJ_T0084644.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 55065929 55083043 + Gas2 protein_coding processed_transcript MGP_C57BL6NJ_T0084645.1 MGP_C57BL6NJ_G0032791.1 mouse_genomes_project 7 55082959 55095681 + Gas2 protein_coding processed_transcript MGP_C57BL6NJ_T0082584.1 MGP_C57BL6NJ_G0032246.1 mouse_genomes_project 7 18795695 18810968 - MGP_C57BL6NJ_P0082584 Ceacam16 protein_coding protein_coding MGP_C57BL6NJ_T0011112.1 MGP_C57BL6NJ_G0009197.1 mouse_genomes_project 7 30000395 30000491 - Gm23368 miRNA miRNA MGP_C57BL6NJ_T0084037.1 MGP_C57BL6NJ_G0032623.1 mouse_genomes_project 7 46248533 46252798 + MGP_C57BL6NJ_P0084037 Klk1b8 protein_coding protein_coding MGP_C57BL6NJ_T0103521.1 MGP_C57BL6NJ_G0041313.1 mouse_genomes_project 7 92732529 92733256 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002437.1 MGP_C57BL6NJ_G0002326.1 mouse_genomes_project 7 131218445 131219461 - TEC TEC MGP_C57BL6NJ_T0098893.1 MGP_C57BL6NJ_G0036957.1 mouse_genomes_project 7 112109275 112110234 + pseudogene pseudogene MGP_C57BL6NJ_T0011118.1 MGP_C57BL6NJ_G0009203.1 mouse_genomes_project 7 44640344 44640454 - Gm23256 miRNA miRNA MGP_C57BL6NJ_T0103380.1 MGP_C57BL6NJ_G0041173.1 mouse_genomes_project 7 16999010 17011149 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009028.1 MGP_C57BL6NJ_G0007295.1 mouse_genomes_project 7 38628544 38631719 - lincRNA lincRNA MGP_C57BL6NJ_T0083072.1 MGP_C57BL6NJ_G0032380.1 mouse_genomes_project 7 27715422 27718300 - MGP_C57BL6NJ_P0083072 protein_coding protein_coding MGP_C57BL6NJ_T0101885.1 MGP_C57BL6NJ_G0039931.1 mouse_genomes_project 7 106379762 106379893 - Gm25409 snoRNA snoRNA MGP_C57BL6NJ_T0103482.1 MGP_C57BL6NJ_G0041274.1 mouse_genomes_project 7 51160651 51161447 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011947.1 MGP_C57BL6NJ_G0010032.1 mouse_genomes_project 7 38031240 38031519 - Gm24550 misc_RNA misc_RNA MGP_C57BL6NJ_T0016234.1 MGP_C57BL6NJ_G0014279.1 mouse_genomes_project 7 42676403 42684392 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085676.1 MGP_C57BL6NJ_G0033029.1 mouse_genomes_project 7 105915207 105934701 - MGP_C57BL6NJ_P0085676 Mogat2 protein_coding protein_coding MGP_C57BL6NJ_T0085677.1 MGP_C57BL6NJ_G0033029.1 mouse_genomes_project 7 105922700 105934676 - Mogat2 protein_coding processed_transcript MGP_C57BL6NJ_T0009047.1 MGP_C57BL6NJ_G0007307.1 mouse_genomes_project 7 43182208 43187256 + lincRNA lincRNA MGP_C57BL6NJ_T0086144.1 MGP_C57BL6NJ_G0033233.1 mouse_genomes_project 7 112753028 112754046 - MGP_C57BL6NJ_P0086144 Olfr686 protein_coding protein_coding MGP_C57BL6NJ_T0008986.1 MGP_C57BL6NJ_G0007257.1 mouse_genomes_project 7 15096410 15097629 - Gm29442 lincRNA lincRNA MGP_C57BL6NJ_T0016166.1 MGP_C57BL6NJ_G0014211.1 mouse_genomes_project 7 23372706 23373145 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002373.1 MGP_C57BL6NJ_G0002263.1 mouse_genomes_project 7 58289362 58290134 - TEC TEC MGP_C57BL6NJ_T0084939.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78087149 78211059 - MGP_C57BL6NJ_P0084939 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084940.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78087205 78129789 - MGP_C57BL6NJ_P0084940 Chd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084941.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78090499 78108681 - MGP_C57BL6NJ_P0084941 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084942.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78110691 78117040 - MGP_C57BL6NJ_P0084942 Chd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084943.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78113260 78123175 - Chd2 protein_coding processed_transcript MGP_C57BL6NJ_T0084944.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78136206 78142629 - Chd2 protein_coding processed_transcript MGP_C57BL6NJ_T0084945.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78136212 78142631 - MGP_C57BL6NJ_P0084945 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084946.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78136213 78140455 - Chd2 protein_coding retained_intron MGP_C57BL6NJ_T0084947.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78161910 78166321 - MGP_C57BL6NJ_P0084947 Chd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084948.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78163845 78166240 - MGP_C57BL6NJ_P0084948 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084949.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78165183 78211058 - MGP_C57BL6NJ_P0084949 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084950.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78166141 78167764 - Chd2 protein_coding retained_intron MGP_C57BL6NJ_T0084951.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78172054 78206934 - MGP_C57BL6NJ_P0084951 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084952.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78172084 78211049 - MGP_C57BL6NJ_P0084952 Chd2 protein_coding protein_coding MGP_C57BL6NJ_T0084953.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78207402 78211143 - Chd2 protein_coding retained_intron MGP_C57BL6NJ_T0084954.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78208666 78211059 - Chd2 protein_coding processed_transcript MGP_C57BL6NJ_T0084955.1 MGP_C57BL6NJ_G0032852.1 mouse_genomes_project 7 78209110 78210838 - Chd2 protein_coding processed_transcript MGP_C57BL6NJ_T0103464.1 MGP_C57BL6NJ_G0041256.1 mouse_genomes_project 7 50351400 50440215 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086033.1 MGP_C57BL6NJ_G0033144.1 mouse_genomes_project 7 110615244 110616204 - MGP_C57BL6NJ_P0086033 Olfr609 protein_coding protein_coding MGP_C57BL6NJ_T0086042.1 MGP_C57BL6NJ_G0033153.1 mouse_genomes_project 7 110799761 110800715 - MGP_C57BL6NJ_P0086042 Olfr622 protein_coding protein_coding MGP_C57BL6NJ_T0002454.1 MGP_C57BL6NJ_G0002343.1 mouse_genomes_project 7 137324760 137327576 - TEC TEC MGP_C57BL6NJ_T0102319.1 MGP_C57BL6NJ_G0040281.1 mouse_genomes_project 7 137911188 137944918 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102320.1 MGP_C57BL6NJ_G0040281.1 mouse_genomes_project 7 137944579 137944774 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0087449.1 MGP_C57BL6NJ_G0033555.1 mouse_genomes_project 7 137424628 137427183 - MGP_C57BL6NJ_P0087449 Vkorc1 protein_coding protein_coding MGP_C57BL6NJ_T0087450.1 MGP_C57BL6NJ_G0033555.1 mouse_genomes_project 7 137424630 137426817 - MGP_C57BL6NJ_P0087450 Vkorc1 protein_coding protein_coding MGP_C57BL6NJ_T0087451.1 MGP_C57BL6NJ_G0033555.1 mouse_genomes_project 7 137424803 137426875 - MGP_C57BL6NJ_P0087451 Vkorc1 protein_coding protein_coding MGP_C57BL6NJ_T0002420.1 MGP_C57BL6NJ_G0002309.1 mouse_genomes_project 7 84697488 84699400 - TEC TEC MGP_C57BL6NJ_T0084227.1 MGP_C57BL6NJ_G0032666.1 mouse_genomes_project 7 47336823 47343576 - MGP_C57BL6NJ_P0084227 Ptov1 protein_coding protein_coding MGP_C57BL6NJ_T0082420.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17927333 17930427 + MGP_C57BL6NJ_P0082420 Dmpk protein_coding protein_coding MGP_C57BL6NJ_T0082421.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17927335 17937276 + MGP_C57BL6NJ_P0082421 Dmpk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082422.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17927406 17937276 + MGP_C57BL6NJ_P0082422 Dmpk protein_coding protein_coding MGP_C57BL6NJ_T0082423.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17927460 17937277 + MGP_C57BL6NJ_P0082423 Dmpk protein_coding protein_coding MGP_C57BL6NJ_T0082424.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17928175 17931167 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082425.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17929965 17937274 + Dmpk protein_coding retained_intron MGP_C57BL6NJ_T0082426.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17929965 17937274 + Dmpk protein_coding retained_intron MGP_C57BL6NJ_T0082427.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17929965 17937274 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082428.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17930734 17932598 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082429.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17930958 17932097 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082430.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17931076 17935217 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082431.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17931211 17932824 + Dmpk protein_coding retained_intron MGP_C57BL6NJ_T0082432.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17931650 17936494 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082433.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17934932 17935811 + Dmpk protein_coding retained_intron MGP_C57BL6NJ_T0082434.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17935065 17935985 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082435.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17935667 17937226 + Dmpk protein_coding processed_transcript MGP_C57BL6NJ_T0082436.1 MGP_C57BL6NJ_G0032204.1 mouse_genomes_project 7 17935745 17936659 + Dmpk protein_coding retained_intron MGP_C57BL6NJ_T0005343.1 MGP_C57BL6NJ_G0004545.1 mouse_genomes_project 7 30475074 30482083 + Arhgap33os antisense antisense MGP_C57BL6NJ_T0084072.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46714450 46769655 + MGP_C57BL6NJ_P0084072 Shank1 protein_coding protein_coding MGP_C57BL6NJ_T0084073.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46716994 46766726 + MGP_C57BL6NJ_P0084073 Shank1 protein_coding protein_coding MGP_C57BL6NJ_T0084074.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46717013 46766576 + MGP_C57BL6NJ_P0084074 Shank1 protein_coding protein_coding MGP_C57BL6NJ_T0084075.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46743763 46751486 + Shank1 protein_coding processed_transcript MGP_C57BL6NJ_T0084076.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46749882 46760597 + Shank1 protein_coding retained_intron MGP_C57BL6NJ_T0084077.1 MGP_C57BL6NJ_G0032641.1 mouse_genomes_project 7 46760000 46761296 + Shank1 protein_coding retained_intron MGP_C57BL6NJ_T0083086.1 MGP_C57BL6NJ_G0032386.1 mouse_genomes_project 7 27929812 27936798 - MGP_C57BL6NJ_P0083086 protein_coding protein_coding MGP_C57BL6NJ_T0083087.1 MGP_C57BL6NJ_G0032386.1 mouse_genomes_project 7 27929812 27936850 - MGP_C57BL6NJ_P0083087 protein_coding protein_coding MGP_C57BL6NJ_T0083088.1 MGP_C57BL6NJ_G0032386.1 mouse_genomes_project 7 27932220 27933343 - MGP_C57BL6NJ_P0083088 protein_coding protein_coding MGP_C57BL6NJ_T0082065.1 MGP_C57BL6NJ_G0032087.1 mouse_genomes_project 7 10357626 10365225 - MGP_C57BL6NJ_P0082065 Zfp551 protein_coding protein_coding MGP_C57BL6NJ_T0082066.1 MGP_C57BL6NJ_G0032087.1 mouse_genomes_project 7 10359422 10364962 - MGP_C57BL6NJ_P0082066 Zfp551 protein_coding protein_coding MGP_C57BL6NJ_T0082067.1 MGP_C57BL6NJ_G0032087.1 mouse_genomes_project 7 10359575 10364913 - Zfp551 protein_coding processed_transcript MGP_C57BL6NJ_T0087504.1 MGP_C57BL6NJ_G0033566.1 mouse_genomes_project 7 137695219 137723576 + MGP_C57BL6NJ_P0087504 protein_coding protein_coding MGP_C57BL6NJ_T0087505.1 MGP_C57BL6NJ_G0033566.1 mouse_genomes_project 7 137695223 137699742 + MGP_C57BL6NJ_P0087505 protein_coding protein_coding MGP_C57BL6NJ_T0087506.1 MGP_C57BL6NJ_G0033566.1 mouse_genomes_project 7 137696007 137723113 + MGP_C57BL6NJ_P0087506 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087507.1 MGP_C57BL6NJ_G0033566.1 mouse_genomes_project 7 137700446 137701152 + protein_coding retained_intron MGP_C57BL6NJ_T0087508.1 MGP_C57BL6NJ_G0033566.1 mouse_genomes_project 7 137716577 137717316 + protein_coding retained_intron MGP_C57BL6NJ_T0083704.1 MGP_C57BL6NJ_G0032534.1 mouse_genomes_project 7 35048462 35051295 + MGP_C57BL6NJ_P0083704 Scgb1b30 protein_coding protein_coding MGP_C57BL6NJ_T0082507.1 MGP_C57BL6NJ_G0032223.1 mouse_genomes_project 7 18285977 18296290 + MGP_C57BL6NJ_P0082507 Ckm protein_coding protein_coding MGP_C57BL6NJ_T0016334.1 MGP_C57BL6NJ_G0014379.1 mouse_genomes_project 7 105104633 105104872 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103544.1 MGP_C57BL6NJ_G0041336.1 mouse_genomes_project 7 114095044 114437177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016201.1 MGP_C57BL6NJ_G0014246.1 mouse_genomes_project 7 32182515 32183519 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011148.1 MGP_C57BL6NJ_G0009233.1 mouse_genomes_project 7 65611353 65611445 - Mir344c miRNA miRNA MGP_C57BL6NJ_T0085192.1 MGP_C57BL6NJ_G0032895.1 mouse_genomes_project 7 85537039 85541074 + MGP_C57BL6NJ_P0085192 Hddc3 protein_coding protein_coding MGP_C57BL6NJ_T0085193.1 MGP_C57BL6NJ_G0032895.1 mouse_genomes_project 7 85537051 85537915 + MGP_C57BL6NJ_P0085193 Hddc3 protein_coding protein_coding MGP_C57BL6NJ_T0085194.1 MGP_C57BL6NJ_G0032895.1 mouse_genomes_project 7 85537059 85540462 + MGP_C57BL6NJ_P0085194 Hddc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085195.1 MGP_C57BL6NJ_G0032895.1 mouse_genomes_project 7 85537501 85540125 + MGP_C57BL6NJ_P0085195 Hddc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085196.1 MGP_C57BL6NJ_G0032895.1 mouse_genomes_project 7 85537714 85546022 + MGP_C57BL6NJ_P0085196 Hddc3 protein_coding protein_coding MGP_C57BL6NJ_T0088019.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151592381 151610325 + MGP_C57BL6NJ_P0088019 Pkp3 protein_coding protein_coding MGP_C57BL6NJ_T0088020.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151593310 151596810 + MGP_C57BL6NJ_P0088020 Pkp3 protein_coding protein_coding MGP_C57BL6NJ_T0088021.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151593923 151610325 + MGP_C57BL6NJ_P0088021 Pkp3 protein_coding protein_coding MGP_C57BL6NJ_T0088022.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151593938 151597285 + MGP_C57BL6NJ_P0088022 Pkp3 protein_coding protein_coding MGP_C57BL6NJ_T0088023.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151593943 151596859 + MGP_C57BL6NJ_P0088023 Pkp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088024.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151607575 151608692 + Pkp3 protein_coding retained_intron MGP_C57BL6NJ_T0088025.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151607960 151610322 + Pkp3 protein_coding retained_intron MGP_C57BL6NJ_T0088026.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151608022 151608663 + Pkp3 protein_coding retained_intron MGP_C57BL6NJ_T0088027.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151609225 151609731 + Pkp3 protein_coding retained_intron MGP_C57BL6NJ_T0088028.1 MGP_C57BL6NJ_G0033703.1 mouse_genomes_project 7 151609675 151610324 + MGP_C57BL6NJ_P0088028 Pkp3 protein_coding protein_coding MGP_C57BL6NJ_T0018843.1 MGP_C57BL6NJ_G0016067.1 mouse_genomes_project 7 67792097 67795263 + Gm27252 processed_transcript lincRNA MGP_C57BL6NJ_T0018844.1 MGP_C57BL6NJ_G0016067.1 mouse_genomes_project 7 67793538 67795094 + Gm27252 processed_transcript antisense MGP_C57BL6NJ_T0087950.1 MGP_C57BL6NJ_G0033674.1 mouse_genomes_project 7 150929330 150930321 + MGP_C57BL6NJ_P0087950 Olfr535 protein_coding protein_coding MGP_C57BL6NJ_T0103483.1 MGP_C57BL6NJ_G0041275.1 mouse_genomes_project 7 51183231 51184216 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082213.1 MGP_C57BL6NJ_G0032137.1 mouse_genomes_project 7 14274204 14284468 + MGP_C57BL6NJ_P0082213 protein_coding protein_coding MGP_C57BL6NJ_T0082214.1 MGP_C57BL6NJ_G0032137.1 mouse_genomes_project 7 14275486 14284370 + MGP_C57BL6NJ_P0082214 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082215.1 MGP_C57BL6NJ_G0032137.1 mouse_genomes_project 7 14282093 14284468 + MGP_C57BL6NJ_P0082215 protein_coding protein_coding MGP_C57BL6NJ_T0088053.1 MGP_C57BL6NJ_G0033710.1 mouse_genomes_project 7 151739229 151743267 - MGP_C57BL6NJ_P0088053 Lmntd2 protein_coding protein_coding MGP_C57BL6NJ_T0088054.1 MGP_C57BL6NJ_G0033710.1 mouse_genomes_project 7 151739229 151743269 - MGP_C57BL6NJ_P0088054 Lmntd2 protein_coding protein_coding MGP_C57BL6NJ_T0103451.1 MGP_C57BL6NJ_G0041243.1 mouse_genomes_project 7 46428450 46471562 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101906.1 MGP_C57BL6NJ_G0039952.1 mouse_genomes_project 7 151991143 151991280 + Snora52 snoRNA snoRNA MGP_C57BL6NJ_T0087491.1 MGP_C57BL6NJ_G0033561.1 mouse_genomes_project 7 137536735 137540884 - MGP_C57BL6NJ_P0087491 Pycard protein_coding protein_coding MGP_C57BL6NJ_T0087492.1 MGP_C57BL6NJ_G0033561.1 mouse_genomes_project 7 137538667 137540544 - MGP_C57BL6NJ_P0087492 Pycard protein_coding protein_coding MGP_C57BL6NJ_T0009236.1 MGP_C57BL6NJ_G0007432.1 mouse_genomes_project 7 140515143 140517164 - Etos1 lincRNA lincRNA MGP_C57BL6NJ_T0087216.1 MGP_C57BL6NJ_G0033509.1 mouse_genomes_project 7 136433558 136435860 - MGP_C57BL6NJ_P0087216 protein_coding protein_coding MGP_C57BL6NJ_T0087217.1 MGP_C57BL6NJ_G0033509.1 mouse_genomes_project 7 136433572 136438835 - protein_coding retained_intron MGP_C57BL6NJ_T0087221.1 MGP_C57BL6NJ_G0033509.1 mouse_genomes_project 7 136434738 136439605 - protein_coding processed_transcript MGP_C57BL6NJ_T0087222.1 MGP_C57BL6NJ_G0033509.1 mouse_genomes_project 7 136434741 136439547 - MGP_C57BL6NJ_P0087222 protein_coding protein_coding MGP_C57BL6NJ_T0087223.1 MGP_C57BL6NJ_G0033509.1 mouse_genomes_project 7 136435278 136439597 - protein_coding processed_transcript MGP_C57BL6NJ_T0083314.1 MGP_C57BL6NJ_G0032439.1 mouse_genomes_project 7 29718921 29735287 + MGP_C57BL6NJ_P0083314 Zfp420 protein_coding protein_coding MGP_C57BL6NJ_T0083315.1 MGP_C57BL6NJ_G0032439.1 mouse_genomes_project 7 29718946 29720557 + Zfp420 protein_coding retained_intron MGP_C57BL6NJ_T0083316.1 MGP_C57BL6NJ_G0032439.1 mouse_genomes_project 7 29718953 29736074 + Zfp420 protein_coding processed_transcript MGP_C57BL6NJ_T0083317.1 MGP_C57BL6NJ_G0032439.1 mouse_genomes_project 7 29718983 29735609 + MGP_C57BL6NJ_P0083317 Zfp420 protein_coding protein_coding MGP_C57BL6NJ_T0083318.1 MGP_C57BL6NJ_G0032439.1 mouse_genomes_project 7 29731305 29733318 + Zfp420 protein_coding retained_intron MGP_C57BL6NJ_T0103391.1 MGP_C57BL6NJ_G0041183.1 mouse_genomes_project 7 31490711 31492854 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085990.1 MGP_C57BL6NJ_G0033104.1 mouse_genomes_project 7 109682546 109683494 + MGP_C57BL6NJ_P0085990 Olfr555 protein_coding protein_coding MGP_C57BL6NJ_T0085407.1 MGP_C57BL6NJ_G0032951.1 mouse_genomes_project 7 91717316 91729883 - MGP_C57BL6NJ_P0085407 Vmn2r74 protein_coding protein_coding MGP_C57BL6NJ_T0086278.1 MGP_C57BL6NJ_G0033280.1 mouse_genomes_project 7 114962374 114963328 + MGP_C57BL6NJ_P0086278 Olfr714 protein_coding protein_coding MGP_C57BL6NJ_T0085429.1 MGP_C57BL6NJ_G0032971.1 mouse_genomes_project 7 92859128 92913007 + MGP_C57BL6NJ_P0085429 protein_coding protein_coding MGP_C57BL6NJ_T0011151.1 MGP_C57BL6NJ_G0009236.1 mouse_genomes_project 7 65782565 65782636 - Mir344g miRNA miRNA MGP_C57BL6NJ_T0016135.1 MGP_C57BL6NJ_G0014180.1 mouse_genomes_project 7 11437706 11438496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088466.1 MGP_C57BL6NJ_G0033788.1 mouse_genomes_project 7 155727808 155737748 - MGP_C57BL6NJ_P0088466 Ccnd1 protein_coding protein_coding MGP_C57BL6NJ_T0088467.1 MGP_C57BL6NJ_G0033788.1 mouse_genomes_project 7 155735173 155736076 - Ccnd1 protein_coding retained_intron MGP_C57BL6NJ_T0082926.1 MGP_C57BL6NJ_G0032345.1 mouse_genomes_project 7 26625002 26630081 + MGP_C57BL6NJ_P0082926 Cyp2t4 protein_coding protein_coding MGP_C57BL6NJ_T0082927.1 MGP_C57BL6NJ_G0032345.1 mouse_genomes_project 7 26626482 26630185 + MGP_C57BL6NJ_P0082927 Cyp2t4 protein_coding protein_coding MGP_C57BL6NJ_T0082008.1 MGP_C57BL6NJ_G0032046.1 mouse_genomes_project 7 3645475 3661526 + MGP_C57BL6NJ_P0082008 Zfp78 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082009.1 MGP_C57BL6NJ_G0032046.1 mouse_genomes_project 7 3653825 3661526 + MGP_C57BL6NJ_P0082009 Zfp78 protein_coding protein_coding MGP_C57BL6NJ_T0083763.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 35957355 36097533 + MGP_C57BL6NJ_P0083763 Pepd protein_coding protein_coding MGP_C57BL6NJ_T0083764.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 35991832 36074589 + MGP_C57BL6NJ_P0083764 Pepd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083765.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 36019280 36093559 + Pepd protein_coding retained_intron MGP_C57BL6NJ_T0083766.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 36019507 36030787 + Pepd protein_coding retained_intron MGP_C57BL6NJ_T0083767.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 36093306 36097532 + Pepd protein_coding retained_intron MGP_C57BL6NJ_T0083768.1 MGP_C57BL6NJ_G0032544.1 mouse_genomes_project 7 36096014 36097359 + Pepd protein_coding retained_intron MGP_C57BL6NJ_T0101877.1 MGP_C57BL6NJ_G0039923.1 mouse_genomes_project 7 87336274 87336399 + Gm25907 snoRNA snoRNA MGP_C57BL6NJ_T0084885.1 MGP_C57BL6NJ_G0032840.1 mouse_genomes_project 7 71409524 71415448 + MGP_C57BL6NJ_P0084885 Lysmd4 protein_coding protein_coding MGP_C57BL6NJ_T0084886.1 MGP_C57BL6NJ_G0032840.1 mouse_genomes_project 7 71409596 71415448 + MGP_C57BL6NJ_P0084886 Lysmd4 protein_coding protein_coding MGP_C57BL6NJ_T0084047.1 MGP_C57BL6NJ_G0032633.1 mouse_genomes_project 7 46511710 46516498 + MGP_C57BL6NJ_P0084047 Klk1b16 protein_coding protein_coding MGP_C57BL6NJ_T0082528.1 MGP_C57BL6NJ_G0032233.1 mouse_genomes_project 7 18476658 18501582 - MGP_C57BL6NJ_P0082528 Clasrp protein_coding protein_coding MGP_C57BL6NJ_T0083909.1 MGP_C57BL6NJ_G0032575.1 mouse_genomes_project 7 43355040 43386380 - MGP_C57BL6NJ_P0083909 Gm6871 protein_coding protein_coding MGP_C57BL6NJ_T0083910.1 MGP_C57BL6NJ_G0032575.1 mouse_genomes_project 7 43355040 43370301 - MGP_C57BL6NJ_P0083910 Gm6871 protein_coding protein_coding MGP_C57BL6NJ_T0083911.1 MGP_C57BL6NJ_G0032575.1 mouse_genomes_project 7 43371572 43386380 - MGP_C57BL6NJ_P0083911 Gm6871 protein_coding protein_coding MGP_C57BL6NJ_T0083325.1 MGP_C57BL6NJ_G0032441.1 mouse_genomes_project 7 29769407 29777929 + MGP_C57BL6NJ_P0083325 Zfp383 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083326.1 MGP_C57BL6NJ_G0032441.1 mouse_genomes_project 7 29769701 29777923 + MGP_C57BL6NJ_P0083326 Zfp383 protein_coding protein_coding MGP_C57BL6NJ_T0086876.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132322684 132375079 + MGP_C57BL6NJ_P0086876 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086877.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132322715 132338018 + Slc5a11 protein_coding processed_transcript MGP_C57BL6NJ_T0086878.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132322717 132382194 + MGP_C57BL6NJ_P0086878 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086879.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132337917 132348454 + MGP_C57BL6NJ_P0086879 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086880.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132337917 132357035 + MGP_C57BL6NJ_P0086880 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086881.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132344647 132382144 + MGP_C57BL6NJ_P0086881 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086882.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132349350 132359168 + MGP_C57BL6NJ_P0086882 Slc5a11 protein_coding protein_coding MGP_C57BL6NJ_T0086883.1 MGP_C57BL6NJ_G0033454.1 mouse_genomes_project 7 132374587 132377200 + Slc5a11 protein_coding processed_transcript MGP_C57BL6NJ_T0085314.1 MGP_C57BL6NJ_G0032917.1 mouse_genomes_project 7 87145636 87157210 - MGP_C57BL6NJ_P0085314 3110040N11Rik protein_coding protein_coding MGP_C57BL6NJ_T0085315.1 MGP_C57BL6NJ_G0032917.1 mouse_genomes_project 7 87148390 87157233 - 3110040N11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0085316.1 MGP_C57BL6NJ_G0032917.1 mouse_genomes_project 7 87148390 87156428 - 3110040N11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0085317.1 MGP_C57BL6NJ_G0032917.1 mouse_genomes_project 7 87148409 87156873 - 3110040N11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0085318.1 MGP_C57BL6NJ_G0032917.1 mouse_genomes_project 7 87148463 87157229 - MGP_C57BL6NJ_P0085318 3110040N11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086110.1 MGP_C57BL6NJ_G0033201.1 mouse_genomes_project 7 111953372 111954418 + MGP_C57BL6NJ_P0086110 Olfr653 protein_coding protein_coding MGP_C57BL6NJ_T0083565.1 MGP_C57BL6NJ_G0032497.1 mouse_genomes_project 7 30866656 30868505 - MGP_C57BL6NJ_P0083565 Ffar3 protein_coding protein_coding MGP_C57BL6NJ_T0083566.1 MGP_C57BL6NJ_G0032497.1 mouse_genomes_project 7 30867260 30868494 - MGP_C57BL6NJ_P0083566 Ffar3 protein_coding protein_coding MGP_C57BL6NJ_T0103382.1 MGP_C57BL6NJ_G0032297.1 mouse_genomes_project 7 24126675 24127261 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011194.1 MGP_C57BL6NJ_G0009279.1 mouse_genomes_project 7 152173480 152173571 + Mir7063 miRNA miRNA MGP_C57BL6NJ_T0018868.1 MGP_C57BL6NJ_G0016075.1 mouse_genomes_project 7 104818679 104820904 + Gm16938 processed_transcript processed_transcript MGP_C57BL6NJ_T0018869.1 MGP_C57BL6NJ_G0016075.1 mouse_genomes_project 7 104818726 104820904 + Gm16938 processed_transcript processed_transcript MGP_C57BL6NJ_T0083187.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28575391 28581875 + Ech1 protein_coding retained_intron MGP_C57BL6NJ_T0083188.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28575391 28583980 + MGP_C57BL6NJ_P0083188 Ech1 protein_coding protein_coding MGP_C57BL6NJ_T0083189.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28575523 28576831 + Ech1 protein_coding retained_intron MGP_C57BL6NJ_T0083190.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28576132 28582966 + Ech1 protein_coding processed_transcript MGP_C57BL6NJ_T0083191.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28576378 28583980 + MGP_C57BL6NJ_P0083191 Ech1 protein_coding protein_coding MGP_C57BL6NJ_T0083192.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28581883 28583980 + Ech1 protein_coding retained_intron MGP_C57BL6NJ_T0083193.1 MGP_C57BL6NJ_G0032412.1 mouse_genomes_project 7 28582983 28583980 + Ech1 protein_coding retained_intron MGP_C57BL6NJ_T0002376.1 MGP_C57BL6NJ_G0002266.1 mouse_genomes_project 7 58638569 58640792 + TEC TEC MGP_C57BL6NJ_T0085713.1 MGP_C57BL6NJ_G0033039.1 mouse_genomes_project 7 106504620 106507192 + MGP_C57BL6NJ_P0085713 Olfr521 protein_coding protein_coding MGP_C57BL6NJ_T0082450.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18025182 18054867 + MGP_C57BL6NJ_P0082450 Eml2 protein_coding protein_coding MGP_C57BL6NJ_T0082451.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18029984 18055092 + MGP_C57BL6NJ_P0082451 Eml2 protein_coding protein_coding MGP_C57BL6NJ_T0082452.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18029995 18055088 + MGP_C57BL6NJ_P0082452 Eml2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082453.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18030018 18055089 + MGP_C57BL6NJ_P0082453 Eml2 protein_coding protein_coding MGP_C57BL6NJ_T0082454.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18030030 18033734 + MGP_C57BL6NJ_P0082454 Eml2 protein_coding protein_coding MGP_C57BL6NJ_T0082455.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18030051 18035173 + MGP_C57BL6NJ_P0082455 Eml2 protein_coding protein_coding MGP_C57BL6NJ_T0082456.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18030146 18033737 + Eml2 protein_coding processed_transcript MGP_C57BL6NJ_T0082457.1 MGP_C57BL6NJ_G0032211.1 mouse_genomes_project 7 18030420 18035186 + Eml2 protein_coding retained_intron MGP_C57BL6NJ_T0081787.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092272 1097474 + MGP_C57BL6NJ_P0081787 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081788.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092282 1095233 + MGP_C57BL6NJ_P0081788 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081789.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092282 1103468 + MGP_C57BL6NJ_P0081789 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081790.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092293 1095686 + MGP_C57BL6NJ_P0081790 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081791.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092299 1103463 + MGP_C57BL6NJ_P0081791 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081792.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092304 1097399 + MGP_C57BL6NJ_P0081792 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081793.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092317 1103464 + Leng8 protein_coding retained_intron MGP_C57BL6NJ_T0081794.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1092795 1096327 + MGP_C57BL6NJ_P0081794 Leng8 protein_coding protein_coding MGP_C57BL6NJ_T0081795.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1097449 1098220 + Leng8 protein_coding retained_intron MGP_C57BL6NJ_T0081796.1 MGP_C57BL6NJ_G0031981.1 mouse_genomes_project 7 1100010 1100933 + Leng8 protein_coding retained_intron MGP_C57BL6NJ_T0082279.1 MGP_C57BL6NJ_G0032154.1 mouse_genomes_project 7 14854660 14893870 + MGP_C57BL6NJ_P0082279 Zc3h4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082280.1 MGP_C57BL6NJ_G0032154.1 mouse_genomes_project 7 14855872 14893867 + MGP_C57BL6NJ_P0082280 Zc3h4 protein_coding protein_coding MGP_C57BL6NJ_T0016355.1 MGP_C57BL6NJ_G0014400.1 mouse_genomes_project 7 123375810 123376578 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085556.1 MGP_C57BL6NJ_G0033004.1 mouse_genomes_project 7 103909140 103929161 + MGP_C57BL6NJ_P0085556 Kctd21 protein_coding protein_coding MGP_C57BL6NJ_T0086024.1 MGP_C57BL6NJ_G0033135.1 mouse_genomes_project 7 110437835 110438780 - MGP_C57BL6NJ_P0086024 Olfr600 protein_coding protein_coding MGP_C57BL6NJ_T0002381.1 MGP_C57BL6NJ_G0002271.1 mouse_genomes_project 7 61260685 61262922 + TEC TEC MGP_C57BL6NJ_T0011123.1 MGP_C57BL6NJ_G0009208.1 mouse_genomes_project 7 47321958 47322031 + Mir707 miRNA miRNA MGP_C57BL6NJ_T0087097.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136159092 136168402 + MGP_C57BL6NJ_P0087097 Gdpd3 protein_coding protein_coding MGP_C57BL6NJ_T0087098.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136159603 136160971 + Gdpd3 protein_coding retained_intron MGP_C57BL6NJ_T0087099.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136159605 136161420 + Gdpd3 protein_coding retained_intron MGP_C57BL6NJ_T0087100.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136159933 136160794 + Gdpd3 protein_coding retained_intron MGP_C57BL6NJ_T0087101.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136160908 136163931 + Gdpd3 protein_coding retained_intron MGP_C57BL6NJ_T0087102.1 MGP_C57BL6NJ_G0033490.1 mouse_genomes_project 7 136161278 136168406 + Gdpd3 protein_coding retained_intron MGP_C57BL6NJ_T0088031.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151644584 151679003 + MGP_C57BL6NJ_P0088031 Ptdss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088032.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151652336 151677538 + MGP_C57BL6NJ_P0088032 Ptdss2 protein_coding protein_coding MGP_C57BL6NJ_T0088033.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151652358 151677370 + MGP_C57BL6NJ_P0088033 Ptdss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088034.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151653366 151681568 + MGP_C57BL6NJ_P0088034 Ptdss2 protein_coding protein_coding MGP_C57BL6NJ_T0088035.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151653381 151678870 + Ptdss2 protein_coding retained_intron MGP_C57BL6NJ_T0088036.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151653424 151665719 + Ptdss2 protein_coding processed_transcript MGP_C57BL6NJ_T0088037.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151653436 151665219 + MGP_C57BL6NJ_P0088037 Ptdss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088038.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151654518 151671627 + MGP_C57BL6NJ_P0088038 Ptdss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088039.1 MGP_C57BL6NJ_G0033706.1 mouse_genomes_project 7 151654633 151665748 + Ptdss2 protein_coding processed_transcript MGP_C57BL6NJ_T0087955.1 MGP_C57BL6NJ_G0033679.1 mouse_genomes_project 7 151099962 151107990 + MGP_C57BL6NJ_P0087955 Olfr53 protein_coding protein_coding MGP_C57BL6NJ_T0085321.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87226431 87251501 + MGP_C57BL6NJ_P0085321 Tm6sf1 protein_coding protein_coding MGP_C57BL6NJ_T0085322.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87226450 87241308 + Tm6sf1 protein_coding retained_intron MGP_C57BL6NJ_T0085323.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87226548 87232829 + Tm6sf1 protein_coding processed_transcript MGP_C57BL6NJ_T0085324.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87226581 87251864 + MGP_C57BL6NJ_P0085324 Tm6sf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085325.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87226879 87245790 + MGP_C57BL6NJ_P0085325 Tm6sf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085326.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87230117 87250849 + MGP_C57BL6NJ_P0085326 Tm6sf1 protein_coding protein_coding MGP_C57BL6NJ_T0085327.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87237163 87239846 + Tm6sf1 protein_coding retained_intron MGP_C57BL6NJ_T0085328.1 MGP_C57BL6NJ_G0032920.1 mouse_genomes_project 7 87240923 87250837 + Tm6sf1 protein_coding retained_intron MGP_C57BL6NJ_T0016342.1 MGP_C57BL6NJ_G0014387.1 mouse_genomes_project 7 110226771 110227434 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084578.1 MGP_C57BL6NJ_G0032770.1 mouse_genomes_project 7 50880756 50890769 - MGP_C57BL6NJ_P0084578 Mrgprx1 protein_coding protein_coding MGP_C57BL6NJ_T0088324.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297875 153298905 - MGP_C57BL6NJ_P0088324 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088325.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297875 153318736 - MGP_C57BL6NJ_P0088325 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088326.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297878 153298946 - MGP_C57BL6NJ_P0088326 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088327.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297878 153298918 - MGP_C57BL6NJ_P0088327 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088328.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297878 153298912 - MGP_C57BL6NJ_P0088328 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088329.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297880 153298937 - MGP_C57BL6NJ_P0088329 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088330.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297928 153298800 - MGP_C57BL6NJ_P0088330 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0088331.1 MGP_C57BL6NJ_G0033756.1 mouse_genomes_project 7 153297932 153298753 - MGP_C57BL6NJ_P0088331 Ins2 protein_coding protein_coding MGP_C57BL6NJ_T0082068.1 MGP_C57BL6NJ_G0032088.1 mouse_genomes_project 7 10443314 10461107 + MGP_C57BL6NJ_P0082068 Zfp606 protein_coding protein_coding MGP_C57BL6NJ_T0082069.1 MGP_C57BL6NJ_G0032088.1 mouse_genomes_project 7 10443326 10448773 + Zfp606 protein_coding retained_intron MGP_C57BL6NJ_T0082070.1 MGP_C57BL6NJ_G0032088.1 mouse_genomes_project 7 10443384 10460434 + MGP_C57BL6NJ_P0082070 Zfp606 protein_coding protein_coding MGP_C57BL6NJ_T0082071.1 MGP_C57BL6NJ_G0032088.1 mouse_genomes_project 7 10454384 10460425 + Zfp606 protein_coding retained_intron MGP_C57BL6NJ_T0103346.1 MGP_C57BL6NJ_G0041139.1 mouse_genomes_project 7 11354320 11398922 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103486.1 MGP_C57BL6NJ_G0041278.1 mouse_genomes_project 7 51570097 51571091 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009076.1 MGP_C57BL6NJ_G0007328.1 mouse_genomes_project 7 69670188 69705074 + BC046251 lincRNA lincRNA MGP_C57BL6NJ_T0016219.1 MGP_C57BL6NJ_G0014264.1 mouse_genomes_project 7 34923686 34924273 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005357.1 MGP_C57BL6NJ_G0004555.1 mouse_genomes_project 7 35376690 35382664 + Gm12764 antisense antisense MGP_C57BL6NJ_T0084201.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47321250 47327668 + MGP_C57BL6NJ_P0084201 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084202.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47321483 47327681 + MGP_C57BL6NJ_P0084202 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084203.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47321603 47327677 + Akt1s1 protein_coding retained_intron MGP_C57BL6NJ_T0084204.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47321840 47325206 + MGP_C57BL6NJ_P0084204 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084205.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47321888 47326996 + MGP_C57BL6NJ_P0084205 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084206.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47322266 47326296 + MGP_C57BL6NJ_P0084206 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084207.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47322275 47327678 + MGP_C57BL6NJ_P0084207 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084208.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47322655 47325123 + MGP_C57BL6NJ_P0084208 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084209.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47323753 47324898 + MGP_C57BL6NJ_P0084209 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084210.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47324830 47326946 + MGP_C57BL6NJ_P0084210 Akt1s1 protein_coding protein_coding MGP_C57BL6NJ_T0084211.1 MGP_C57BL6NJ_G0032664.1 mouse_genomes_project 7 47325179 47326904 + Akt1s1 protein_coding retained_intron MGP_C57BL6NJ_T0016134.1 MGP_C57BL6NJ_G0014179.1 mouse_genomes_project 7 11152119 11153391 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084500.1 MGP_C57BL6NJ_G0032746.1 mouse_genomes_project 7 49018127 49021926 + MGP_C57BL6NJ_P0084500 Myod1 protein_coding protein_coding MGP_C57BL6NJ_T0005310.1 MGP_C57BL6NJ_G0004521.1 mouse_genomes_project 7 15090994 15112182 + Gm29443 antisense antisense MGP_C57BL6NJ_T0005311.1 MGP_C57BL6NJ_G0004521.1 mouse_genomes_project 7 15091210 15112281 + Gm29443 antisense antisense MGP_C57BL6NJ_T0082932.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26640026 26651011 - MGP_C57BL6NJ_P0082932 Rab4b protein_coding protein_coding MGP_C57BL6NJ_T0082933.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26640028 26650925 - MGP_C57BL6NJ_P0082933 Rab4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082934.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26640029 26650930 - Rab4b protein_coding retained_intron MGP_C57BL6NJ_T0082936.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26640297 26651003 - Rab4b protein_coding processed_transcript MGP_C57BL6NJ_T0082937.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26644144 26646258 - Rab4b protein_coding retained_intron MGP_C57BL6NJ_T0082938.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26644455 26646205 - Rab4b protein_coding processed_transcript MGP_C57BL6NJ_T0082939.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26647542 26650991 - Rab4b protein_coding processed_transcript MGP_C57BL6NJ_T0082940.1 MGP_C57BL6NJ_G0032347.1 mouse_genomes_project 7 26647573 26650938 - Rab4b protein_coding processed_transcript MGP_C57BL6NJ_T0008998.1 MGP_C57BL6NJ_G0007268.1 mouse_genomes_project 7 24378184 24382355 + D930028M14Rik lincRNA lincRNA MGP_C57BL6NJ_T0008999.1 MGP_C57BL6NJ_G0007268.1 mouse_genomes_project 7 24380796 24381947 + D930028M14Rik lincRNA lincRNA MGP_C57BL6NJ_T0086050.1 MGP_C57BL6NJ_G0033161.1 mouse_genomes_project 7 110988695 110989658 - MGP_C57BL6NJ_P0086050 Olfr67 protein_coding protein_coding MGP_C57BL6NJ_T0009198.1 MGP_C57BL6NJ_G0007407.1 mouse_genomes_project 7 133684273 133702022 - Gm15339 lincRNA lincRNA MGP_C57BL6NJ_T0085632.1 MGP_C57BL6NJ_G0033019.1 mouse_genomes_project 7 104833673 104840738 - MGP_C57BL6NJ_P0085632 B3gnt6 protein_coding protein_coding MGP_C57BL6NJ_T0009133.1 MGP_C57BL6NJ_G0007368.1 mouse_genomes_project 7 84624323 84649956 + Gm35040 lincRNA lincRNA MGP_C57BL6NJ_T0084256.1 MGP_C57BL6NJ_G0032683.1 mouse_genomes_project 7 47626011 47628019 - MGP_C57BL6NJ_P0084256 Rps11 protein_coding protein_coding MGP_C57BL6NJ_T0005391.1 MGP_C57BL6NJ_G0004580.1 mouse_genomes_project 7 83233688 83234814 + 4921513I08Rik antisense antisense MGP_C57BL6NJ_T0084242.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47488568 47510874 - Scaf1 protein_coding retained_intron MGP_C57BL6NJ_T0084243.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47499696 47513264 - MGP_C57BL6NJ_P0084243 Scaf1 protein_coding protein_coding MGP_C57BL6NJ_T0084244.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47499696 47511305 - MGP_C57BL6NJ_P0084244 Scaf1 protein_coding protein_coding MGP_C57BL6NJ_T0084245.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47506833 47513032 - Scaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0084246.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47509058 47510462 - Scaf1 protein_coding retained_intron MGP_C57BL6NJ_T0084247.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47510152 47512758 - MGP_C57BL6NJ_P0084247 Scaf1 protein_coding protein_coding MGP_C57BL6NJ_T0084248.1 MGP_C57BL6NJ_G0032676.1 mouse_genomes_project 7 47511104 47511837 - Scaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0087271.1 MGP_C57BL6NJ_G0033519.1 mouse_genomes_project 7 136651136 136657134 + MGP_C57BL6NJ_P0087271 Mylpf protein_coding protein_coding MGP_C57BL6NJ_T0087272.1 MGP_C57BL6NJ_G0033519.1 mouse_genomes_project 7 136655372 136657899 + MGP_C57BL6NJ_P0087272 Mylpf protein_coding protein_coding MGP_C57BL6NJ_T0087273.1 MGP_C57BL6NJ_G0033519.1 mouse_genomes_project 7 136656290 136657099 + MGP_C57BL6NJ_P0087273 Mylpf protein_coding protein_coding MGP_C57BL6NJ_T0087274.1 MGP_C57BL6NJ_G0033519.1 mouse_genomes_project 7 136656725 136657067 + Mylpf protein_coding retained_intron MGP_C57BL6NJ_T0087275.1 MGP_C57BL6NJ_G0033519.1 mouse_genomes_project 7 136657507 136657899 + Mylpf protein_coding retained_intron MGP_C57BL6NJ_T0103415.1 MGP_C57BL6NJ_G0041207.1 mouse_genomes_project 7 34779759 34781522 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011105.1 MGP_C57BL6NJ_G0009190.1 mouse_genomes_project 7 26647751 26647839 - Mir3101 miRNA miRNA MGP_C57BL6NJ_T0008981.1 MGP_C57BL6NJ_G0007253.1 mouse_genomes_project 7 904523 906274 - lincRNA lincRNA MGP_C57BL6NJ_T0002339.1 MGP_C57BL6NJ_G0002229.1 mouse_genomes_project 7 16444758 16446930 - TEC TEC MGP_C57BL6NJ_T0084694.1 MGP_C57BL6NJ_G0032799.1 mouse_genomes_project 7 59355586 59399227 - MGP_C57BL6NJ_P0084694 Nipa1 protein_coding protein_coding MGP_C57BL6NJ_T0084122.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928200 46932762 + MGP_C57BL6NJ_P0084122 Fam71e1 protein_coding protein_coding MGP_C57BL6NJ_T0084123.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928207 46931959 + Fam71e1 protein_coding retained_intron MGP_C57BL6NJ_T0084124.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928218 46928768 + MGP_C57BL6NJ_P0084124 Fam71e1 protein_coding protein_coding MGP_C57BL6NJ_T0084125.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928277 46932755 + MGP_C57BL6NJ_P0084125 Fam71e1 protein_coding protein_coding MGP_C57BL6NJ_T0084126.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928287 46932755 + MGP_C57BL6NJ_P0084126 Fam71e1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084127.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928291 46933108 + Fam71e1 protein_coding retained_intron MGP_C57BL6NJ_T0084128.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928291 46929628 + Fam71e1 protein_coding retained_intron MGP_C57BL6NJ_T0084129.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46928313 46931988 + Fam71e1 protein_coding retained_intron MGP_C57BL6NJ_T0084130.1 MGP_C57BL6NJ_G0032648.1 mouse_genomes_project 7 46932046 46932754 + Fam71e1 protein_coding processed_transcript MGP_C57BL6NJ_T0087981.1 MGP_C57BL6NJ_G0033691.1 mouse_genomes_project 7 151338080 151356332 - MGP_C57BL6NJ_P0087981 Sirt3 protein_coding protein_coding MGP_C57BL6NJ_T0087982.1 MGP_C57BL6NJ_G0033691.1 mouse_genomes_project 7 151338080 151356772 - MGP_C57BL6NJ_P0087982 Sirt3 protein_coding protein_coding MGP_C57BL6NJ_T0087983.1 MGP_C57BL6NJ_G0033691.1 mouse_genomes_project 7 151339430 151352610 - MGP_C57BL6NJ_P0087983 Sirt3 protein_coding protein_coding MGP_C57BL6NJ_T0087984.1 MGP_C57BL6NJ_G0033691.1 mouse_genomes_project 7 151343899 151356332 - MGP_C57BL6NJ_P0087984 Sirt3 protein_coding protein_coding MGP_C57BL6NJ_T0087985.1 MGP_C57BL6NJ_G0033691.1 mouse_genomes_project 7 151350896 151356332 - MGP_C57BL6NJ_P0087985 Sirt3 protein_coding protein_coding MGP_C57BL6NJ_T0099156.1 MGP_C57BL6NJ_G0037220.1 mouse_genomes_project 7 138402521 138402639 - n-R5s158 rRNA rRNA MGP_C57BL6NJ_T0083339.1 MGP_C57BL6NJ_G0032447.1 mouse_genomes_project 7 29952217 29990270 - MGP_C57BL6NJ_P0083339 Gm26920 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082779.1 MGP_C57BL6NJ_G0032303.1 mouse_genomes_project 7 24434246 24455519 - MGP_C57BL6NJ_P0082779 Dedd2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082780.1 MGP_C57BL6NJ_G0032303.1 mouse_genomes_project 7 24434256 24455478 - Dedd2 protein_coding processed_transcript MGP_C57BL6NJ_T0082781.1 MGP_C57BL6NJ_G0032303.1 mouse_genomes_project 7 24452712 24455490 - Dedd2 protein_coding retained_intron MGP_C57BL6NJ_T0086136.1 MGP_C57BL6NJ_G0033225.1 mouse_genomes_project 7 112576941 112577880 + MGP_C57BL6NJ_P0086136 Olfr677 protein_coding protein_coding MGP_C57BL6NJ_T0084510.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49299955 49321561 - MGP_C57BL6NJ_P0084510 Tph1 protein_coding protein_coding MGP_C57BL6NJ_T0084511.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49299986 49326727 - MGP_C57BL6NJ_P0084511 Tph1 protein_coding protein_coding MGP_C57BL6NJ_T0084512.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49300251 49319485 - MGP_C57BL6NJ_P0084512 Tph1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084513.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49300251 49319472 - MGP_C57BL6NJ_P0084513 Tph1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084514.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49303836 49305515 - Tph1 protein_coding retained_intron MGP_C57BL6NJ_T0084515.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49310887 49314694 - Tph1 protein_coding retained_intron MGP_C57BL6NJ_T0084516.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49314045 49316499 - Tph1 protein_coding retained_intron MGP_C57BL6NJ_T0084517.1 MGP_C57BL6NJ_G0032749.1 mouse_genomes_project 7 49314363 49321527 - MGP_C57BL6NJ_P0084517 Tph1 protein_coding protein_coding MGP_C57BL6NJ_T0103470.1 MGP_C57BL6NJ_G0041262.1 mouse_genomes_project 7 50579554 50580374 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084579.1 MGP_C57BL6NJ_G0032771.1 mouse_genomes_project 7 51032425 51033462 - MGP_C57BL6NJ_P0084579 Mrgprb5 protein_coding protein_coding MGP_C57BL6NJ_T0016321.1 MGP_C57BL6NJ_G0014366.1 mouse_genomes_project 7 100541499 100541769 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084476.1 MGP_C57BL6NJ_G0032739.1 mouse_genomes_project 7 48518976 48526221 + MGP_C57BL6NJ_P0084476 Ccdc114 protein_coding protein_coding MGP_C57BL6NJ_T0084477.1 MGP_C57BL6NJ_G0032739.1 mouse_genomes_project 7 48519120 48519972 + Ccdc114 protein_coding retained_intron MGP_C57BL6NJ_T0084478.1 MGP_C57BL6NJ_G0032739.1 mouse_genomes_project 7 48519147 48526227 + MGP_C57BL6NJ_P0084478 Ccdc114 protein_coding protein_coding MGP_C57BL6NJ_T0084479.1 MGP_C57BL6NJ_G0032739.1 mouse_genomes_project 7 48519147 48532385 + MGP_C57BL6NJ_P0084479 Ccdc114 protein_coding protein_coding MGP_C57BL6NJ_T0084480.1 MGP_C57BL6NJ_G0032739.1 mouse_genomes_project 7 48519424 48544358 + MGP_C57BL6NJ_P0084480 Ccdc114 protein_coding protein_coding MGP_C57BL6NJ_T0011967.1 MGP_C57BL6NJ_G0010052.1 mouse_genomes_project 7 153934333 153934452 + Gm27803 misc_RNA misc_RNA MGP_C57BL6NJ_T0082611.1 MGP_C57BL6NJ_G0032263.1 mouse_genomes_project 7 23051144 23052045 + MGP_C57BL6NJ_P0082611 Vmn1r183 protein_coding protein_coding MGP_C57BL6NJ_T0099155.1 MGP_C57BL6NJ_G0037219.1 mouse_genomes_project 7 125202328 125202449 - n-R5s157 rRNA rRNA MGP_C57BL6NJ_T0016183.1 MGP_C57BL6NJ_G0014228.1 mouse_genomes_project 7 26517821 26518179 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016222.1 MGP_C57BL6NJ_G0014267.1 mouse_genomes_project 7 35371676 35372092 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011949.1 MGP_C57BL6NJ_G0010034.1 mouse_genomes_project 7 46630393 46630681 + Gm25386 misc_RNA misc_RNA MGP_C57BL6NJ_T0009153.1 MGP_C57BL6NJ_G0007378.1 mouse_genomes_project 7 96149487 96154926 - 2310010J17Rik lincRNA lincRNA MGP_C57BL6NJ_T0083305.1 MGP_C57BL6NJ_G0032436.1 mouse_genomes_project 7 29633973 29644869 + MGP_C57BL6NJ_P0083305 Zfp30 protein_coding protein_coding MGP_C57BL6NJ_T0083306.1 MGP_C57BL6NJ_G0032436.1 mouse_genomes_project 7 29633998 29642080 + Zfp30 protein_coding retained_intron MGP_C57BL6NJ_T0083307.1 MGP_C57BL6NJ_G0032436.1 mouse_genomes_project 7 29634164 29643894 + MGP_C57BL6NJ_P0083307 Zfp30 protein_coding protein_coding MGP_C57BL6NJ_T0088334.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153530124 153569494 - MGP_C57BL6NJ_P0088334 Th protein_coding protein_coding MGP_C57BL6NJ_T0088335.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153530124 153537482 - MGP_C57BL6NJ_P0088335 Th protein_coding protein_coding MGP_C57BL6NJ_T0088336.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153530338 153537429 - MGP_C57BL6NJ_P0088336 Th protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088337.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153531813 153534077 - MGP_C57BL6NJ_P0088337 Th protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088338.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153531841 153537434 - MGP_C57BL6NJ_P0088338 Th protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088339.1 MGP_C57BL6NJ_G0033758.1 mouse_genomes_project 7 153534065 153569486 - MGP_C57BL6NJ_P0088339 Th protein_coding protein_coding MGP_C57BL6NJ_T0084695.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59429348 59448998 + MGP_C57BL6NJ_P0084695 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0084696.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59429405 59619128 + MGP_C57BL6NJ_P0084696 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0084697.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59429541 59619091 + MGP_C57BL6NJ_P0084697 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0084698.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59429917 59497093 + MGP_C57BL6NJ_P0084698 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0084699.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59430029 59618460 + MGP_C57BL6NJ_P0084699 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0084700.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59430099 59453946 + Herc2 protein_coding retained_intron MGP_C57BL6NJ_T0084701.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59544363 59551577 + Herc2 protein_coding processed_transcript MGP_C57BL6NJ_T0084702.1 MGP_C57BL6NJ_G0032800.1 mouse_genomes_project 7 59607827 59618429 + MGP_C57BL6NJ_P0084702 Herc2 protein_coding protein_coding MGP_C57BL6NJ_T0002390.1 MGP_C57BL6NJ_G0002280.1 mouse_genomes_project 7 69420972 69421383 - TEC TEC MGP_C57BL6NJ_T0103471.1 MGP_C57BL6NJ_G0041263.1 mouse_genomes_project 7 50592721 50593217 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103533.1 MGP_C57BL6NJ_G0041325.1 mouse_genomes_project 7 111031099 111032192 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0088165.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997660 152004877 + MGP_C57BL6NJ_P0088165 Pnpla2 protein_coding protein_coding MGP_C57BL6NJ_T0088166.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997668 152004226 + MGP_C57BL6NJ_P0088166 Pnpla2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088167.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997669 152004228 + MGP_C57BL6NJ_P0088167 Pnpla2 protein_coding protein_coding MGP_C57BL6NJ_T0088168.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997681 152003072 + MGP_C57BL6NJ_P0088168 Pnpla2 protein_coding protein_coding MGP_C57BL6NJ_T0088169.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997691 152004237 + MGP_C57BL6NJ_P0088169 Pnpla2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088170.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151997749 152004231 + MGP_C57BL6NJ_P0088170 Pnpla2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088171.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151998069 152000614 + MGP_C57BL6NJ_P0088171 Pnpla2 protein_coding protein_coding MGP_C57BL6NJ_T0088172.1 MGP_C57BL6NJ_G0033726.1 mouse_genomes_project 7 151999480 152002820 + MGP_C57BL6NJ_P0088172 Pnpla2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086911.1 MGP_C57BL6NJ_G0033461.1 mouse_genomes_project 7 134757592 134784969 - MGP_C57BL6NJ_P0086911 Nsmce1 protein_coding protein_coding MGP_C57BL6NJ_T0086912.1 MGP_C57BL6NJ_G0033461.1 mouse_genomes_project 7 134761063 134784772 - MGP_C57BL6NJ_P0086912 Nsmce1 protein_coding protein_coding MGP_C57BL6NJ_T0086913.1 MGP_C57BL6NJ_G0033461.1 mouse_genomes_project 7 134761117 134771938 - Nsmce1 protein_coding processed_transcript MGP_C57BL6NJ_T0081758.1 MGP_C57BL6NJ_G0031978.1 mouse_genomes_project 7 849014 886746 - MGP_C57BL6NJ_P0081758 protein_coding protein_coding MGP_C57BL6NJ_T0084272.1 MGP_C57BL6NJ_G0032688.1 mouse_genomes_project 7 47670228 47683592 + MGP_C57BL6NJ_P0084272 Slc17a7 protein_coding protein_coding MGP_C57BL6NJ_T0103535.1 MGP_C57BL6NJ_G0041327.1 mouse_genomes_project 7 111194242 111195197 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086679.1 MGP_C57BL6NJ_G0033402.1 mouse_genomes_project 7 127917824 127963978 - MGP_C57BL6NJ_P0086679 Gpr139 protein_coding protein_coding MGP_C57BL6NJ_T0082906.1 MGP_C57BL6NJ_G0032337.1 mouse_genomes_project 7 26190887 26206203 + MGP_C57BL6NJ_P0082906 Cyp2b19 protein_coding protein_coding MGP_C57BL6NJ_T0082907.1 MGP_C57BL6NJ_G0032337.1 mouse_genomes_project 7 26190908 26199191 + Cyp2b19 protein_coding retained_intron MGP_C57BL6NJ_T0082908.1 MGP_C57BL6NJ_G0032337.1 mouse_genomes_project 7 26200127 26204964 + Cyp2b19 protein_coding retained_intron MGP_C57BL6NJ_T0101890.1 MGP_C57BL6NJ_G0039936.1 mouse_genomes_project 7 117634711 117634841 + Gm24888 snoRNA snoRNA MGP_C57BL6NJ_T0084355.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48035525 48053033 - MGP_C57BL6NJ_P0084355 Nucb1 protein_coding protein_coding MGP_C57BL6NJ_T0084356.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48036823 48045905 - MGP_C57BL6NJ_P0084356 Nucb1 protein_coding protein_coding MGP_C57BL6NJ_T0084357.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48037704 48038141 - Nucb1 protein_coding processed_transcript MGP_C57BL6NJ_T0084358.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48038078 48045899 - Nucb1 protein_coding processed_transcript MGP_C57BL6NJ_T0084359.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48040818 48041490 - Nucb1 protein_coding retained_intron MGP_C57BL6NJ_T0084360.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48041378 48052942 - MGP_C57BL6NJ_P0084360 Nucb1 protein_coding protein_coding MGP_C57BL6NJ_T0084361.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48044244 48052958 - MGP_C57BL6NJ_P0084361 Nucb1 protein_coding protein_coding MGP_C57BL6NJ_T0084362.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48045713 48053016 - Nucb1 protein_coding processed_transcript MGP_C57BL6NJ_T0084363.1 MGP_C57BL6NJ_G0032710.1 mouse_genomes_project 7 48049795 48053012 - Nucb1 protein_coding retained_intron MGP_C57BL6NJ_T0005441.1 MGP_C57BL6NJ_G0004613.1 mouse_genomes_project 7 130294504 130378543 - Gm45077 antisense antisense MGP_C57BL6NJ_T0085415.1 MGP_C57BL6NJ_G0032958.1 mouse_genomes_project 7 92151037 92151997 - MGP_C57BL6NJ_P0085415 Olfr305 protein_coding protein_coding MGP_C57BL6NJ_T0102552.1 MGP_C57BL6NJ_G0040393.1 mouse_genomes_project 7 15128437 15137672 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102553.1 MGP_C57BL6NJ_G0040393.1 mouse_genomes_project 7 15128820 15131269 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0016168.1 MGP_C57BL6NJ_G0014213.1 mouse_genomes_project 7 23774829 23775154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083461.1 MGP_C57BL6NJ_G0032478.1 mouse_genomes_project 7 30518362 30520480 - MGP_C57BL6NJ_P0083461 Psenen protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011124.1 MGP_C57BL6NJ_G0009209.1 mouse_genomes_project 7 47509326 47509388 - Mir7054 miRNA miRNA MGP_C57BL6NJ_T0086114.1 MGP_C57BL6NJ_G0033205.1 mouse_genomes_project 7 112025788 112026748 + MGP_C57BL6NJ_P0086114 Olfr657 protein_coding protein_coding MGP_C57BL6NJ_T0009017.1 MGP_C57BL6NJ_G0007284.1 mouse_genomes_project 7 36110087 36119504 - Gm45096 lincRNA lincRNA MGP_C57BL6NJ_T0103387.1 MGP_C57BL6NJ_G0041179.1 mouse_genomes_project 7 26169863 26177063 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085996.1 MGP_C57BL6NJ_G0033110.1 mouse_genomes_project 7 109752891 109755222 - MGP_C57BL6NJ_P0085996 Olfr559 protein_coding protein_coding MGP_C57BL6NJ_T0011121.1 MGP_C57BL6NJ_G0009206.1 mouse_genomes_project 7 46897031 46897096 + Mir7052 miRNA miRNA MGP_C57BL6NJ_T0016161.1 MGP_C57BL6NJ_G0014206.1 mouse_genomes_project 7 16681186 16681885 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086078.1 MGP_C57BL6NJ_G0033188.1 mouse_genomes_project 7 111441609 111448240 - MGP_C57BL6NJ_P0086078 Olfr649 protein_coding protein_coding MGP_C57BL6NJ_T0086079.1 MGP_C57BL6NJ_G0033188.1 mouse_genomes_project 7 111441610 111442549 - MGP_C57BL6NJ_P0086079 Olfr649 protein_coding protein_coding MGP_C57BL6NJ_T0082186.1 MGP_C57BL6NJ_G0032129.1 mouse_genomes_project 7 12694106 12696387 - MGP_C57BL6NJ_P0082186 protein_coding protein_coding MGP_C57BL6NJ_T0102317.1 MGP_C57BL6NJ_G0040280.1 mouse_genomes_project 7 135481815 135486186 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102318.1 MGP_C57BL6NJ_G0040280.1 mouse_genomes_project 7 135483427 135484384 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0084017.1 MGP_C57BL6NJ_G0032614.1 mouse_genomes_project 7 46011463 46028914 + MGP_C57BL6NJ_P0084017 Klk11 protein_coding protein_coding MGP_C57BL6NJ_T0084018.1 MGP_C57BL6NJ_G0032614.1 mouse_genomes_project 7 46025979 46028604 + Klk11 protein_coding retained_intron MGP_C57BL6NJ_T0084019.1 MGP_C57BL6NJ_G0032614.1 mouse_genomes_project 7 46025979 46028909 + MGP_C57BL6NJ_P0084019 Klk11 protein_coding protein_coding MGP_C57BL6NJ_T0084020.1 MGP_C57BL6NJ_G0032614.1 mouse_genomes_project 7 46026130 46028711 + Klk11 protein_coding processed_transcript MGP_C57BL6NJ_T0084021.1 MGP_C57BL6NJ_G0032614.1 mouse_genomes_project 7 46026130 46028711 + Klk11 protein_coding processed_transcript MGP_C57BL6NJ_T0081907.1 MGP_C57BL6NJ_G0032002.1 mouse_genomes_project 7 1746392 1770431 - MGP_C57BL6NJ_P0081907 Fam71e2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081908.1 MGP_C57BL6NJ_G0032002.1 mouse_genomes_project 7 1746395 1770431 - MGP_C57BL6NJ_P0081908 Fam71e2 protein_coding protein_coding MGP_C57BL6NJ_T0082562.1 MGP_C57BL6NJ_G0032241.1 mouse_genomes_project 7 18636190 18677182 - MGP_C57BL6NJ_P0082562 Nectin2 protein_coding protein_coding MGP_C57BL6NJ_T0082563.1 MGP_C57BL6NJ_G0032241.1 mouse_genomes_project 7 18645012 18677182 - MGP_C57BL6NJ_P0082563 Nectin2 protein_coding protein_coding MGP_C57BL6NJ_T0084340.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47961302 47989265 + MGP_C57BL6NJ_P0084340 Gys1 protein_coding protein_coding MGP_C57BL6NJ_T0084341.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47961335 47988476 + MGP_C57BL6NJ_P0084341 Gys1 protein_coding protein_coding MGP_C57BL6NJ_T0084342.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47980239 47984456 + Gys1 protein_coding processed_transcript MGP_C57BL6NJ_T0084343.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47980365 47984480 + Gys1 protein_coding processed_transcript MGP_C57BL6NJ_T0084344.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47980888 47987968 + Gys1 protein_coding retained_intron MGP_C57BL6NJ_T0084345.1 MGP_C57BL6NJ_G0032705.1 mouse_genomes_project 7 47983653 47984745 + Gys1 protein_coding retained_intron MGP_C57BL6NJ_T0005319.1 MGP_C57BL6NJ_G0004526.1 mouse_genomes_project 7 18634562 18641289 + Gm20512 antisense antisense MGP_C57BL6NJ_T0103385.1 MGP_C57BL6NJ_G0041177.1 mouse_genomes_project 7 25383852 25397712 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083436.1 MGP_C57BL6NJ_G0032472.1 mouse_genomes_project 7 30410929 30413624 + MGP_C57BL6NJ_P0083436 Nphs1 protein_coding protein_coding MGP_C57BL6NJ_T0083437.1 MGP_C57BL6NJ_G0032472.1 mouse_genomes_project 7 30412339 30444855 + MGP_C57BL6NJ_P0083437 Nphs1 protein_coding protein_coding MGP_C57BL6NJ_T0083438.1 MGP_C57BL6NJ_G0032472.1 mouse_genomes_project 7 30427004 30438753 + Nphs1 protein_coding retained_intron MGP_C57BL6NJ_T0083439.1 MGP_C57BL6NJ_G0032472.1 mouse_genomes_project 7 30434080 30444513 + MGP_C57BL6NJ_P0083439 Nphs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083440.1 MGP_C57BL6NJ_G0032472.1 mouse_genomes_project 7 30443886 30444620 + Nphs1 protein_coding retained_intron MGP_C57BL6NJ_T0088399.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154412064 154417864 - Osbpl5 protein_coding retained_intron MGP_C57BL6NJ_T0088400.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154412064 154463482 - MGP_C57BL6NJ_P0088400 Osbpl5 protein_coding protein_coding MGP_C57BL6NJ_T0088401.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154412064 154465104 - MGP_C57BL6NJ_P0088401 Osbpl5 protein_coding protein_coding MGP_C57BL6NJ_T0088402.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154417566 154418390 - Osbpl5 protein_coding retained_intron MGP_C57BL6NJ_T0088403.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154426158 154428260 - Osbpl5 protein_coding retained_intron MGP_C57BL6NJ_T0088404.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154432191 154483500 - MGP_C57BL6NJ_P0088404 Osbpl5 protein_coding protein_coding MGP_C57BL6NJ_T0088405.1 MGP_C57BL6NJ_G0033773.1 mouse_genomes_project 7 154436636 154463440 - Osbpl5 protein_coding processed_transcript MGP_C57BL6NJ_T0016369.1 MGP_C57BL6NJ_G0014414.1 mouse_genomes_project 7 135497667 135498078 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081911.1 MGP_C57BL6NJ_G0032004.1 mouse_genomes_project 7 1786743 1788148 + MGP_C57BL6NJ_P0081911 Tmem190 protein_coding protein_coding MGP_C57BL6NJ_T0081912.1 MGP_C57BL6NJ_G0032004.1 mouse_genomes_project 7 1786757 1787165 + Tmem190 protein_coding retained_intron MGP_C57BL6NJ_T0086255.1 MGP_C57BL6NJ_G0033258.1 mouse_genomes_project 7 114285480 114437181 - MGP_C57BL6NJ_P0086255 protein_coding protein_coding MGP_C57BL6NJ_T0084978.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80711923 80741232 + MGP_C57BL6NJ_P0084978 Klhl25 protein_coding protein_coding MGP_C57BL6NJ_T0084979.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80711951 80741231 + MGP_C57BL6NJ_P0084979 Klhl25 protein_coding protein_coding MGP_C57BL6NJ_T0084980.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80711954 80733359 + MGP_C57BL6NJ_P0084980 Klhl25 protein_coding protein_coding MGP_C57BL6NJ_T0084981.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80711977 80733355 + MGP_C57BL6NJ_P0084981 Klhl25 protein_coding protein_coding MGP_C57BL6NJ_T0084982.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80712010 80740626 + Klhl25 protein_coding processed_transcript MGP_C57BL6NJ_T0084983.1 MGP_C57BL6NJ_G0032858.1 mouse_genomes_project 7 80712054 80731495 + MGP_C57BL6NJ_P0084983 Klhl25 protein_coding protein_coding MGP_C57BL6NJ_T0016155.1 MGP_C57BL6NJ_G0014200.1 mouse_genomes_project 7 15173048 15173601 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085633.1 MGP_C57BL6NJ_G0033020.1 mouse_genomes_project 7 104858277 104951930 - MGP_C57BL6NJ_P0085633 Acer3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085634.1 MGP_C57BL6NJ_G0033020.1 mouse_genomes_project 7 104858671 104951852 - MGP_C57BL6NJ_P0085634 Acer3 protein_coding protein_coding MGP_C57BL6NJ_T0085635.1 MGP_C57BL6NJ_G0033020.1 mouse_genomes_project 7 104864780 104868723 - Acer3 protein_coding retained_intron MGP_C57BL6NJ_T0085636.1 MGP_C57BL6NJ_G0033020.1 mouse_genomes_project 7 104895036 104951908 - MGP_C57BL6NJ_P0085636 Acer3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085423.1 MGP_C57BL6NJ_G0032966.1 mouse_genomes_project 7 92466077 92467085 - MGP_C57BL6NJ_P0085423 Olfr294 protein_coding protein_coding MGP_C57BL6NJ_T0087514.1 MGP_C57BL6NJ_G0033568.1 mouse_genomes_project 7 137785221 137786174 - MGP_C57BL6NJ_P0087514 Cox6a2 protein_coding protein_coding MGP_C57BL6NJ_T0084251.1 MGP_C57BL6NJ_G0032679.1 mouse_genomes_project 7 47556385 47565518 - MGP_C57BL6NJ_P0084251 Prrg2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002402.1 MGP_C57BL6NJ_G0002291.1 mouse_genomes_project 7 80297000 80298396 + TEC TEC MGP_C57BL6NJ_T0085988.1 MGP_C57BL6NJ_G0033102.1 mouse_genomes_project 7 109646232 109647213 - MGP_C57BL6NJ_P0085988 Olfr553 protein_coding protein_coding MGP_C57BL6NJ_T0101901.1 MGP_C57BL6NJ_G0039947.1 mouse_genomes_project 7 133327610 133327739 + Gm25759 snoRNA snoRNA MGP_C57BL6NJ_T0011101.1 MGP_C57BL6NJ_G0009186.1 mouse_genomes_project 7 24314359 24314469 - Mir6537 miRNA miRNA MGP_C57BL6NJ_T0082099.1 MGP_C57BL6NJ_G0032099.1 mouse_genomes_project 7 10853184 10856841 + MGP_C57BL6NJ_P0082099 Rnf225 protein_coding protein_coding MGP_C57BL6NJ_T0082814.1 MGP_C57BL6NJ_G0032311.1 mouse_genomes_project 7 24568758 24631612 + MGP_C57BL6NJ_P0082814 Megf8 protein_coding protein_coding MGP_C57BL6NJ_T0082815.1 MGP_C57BL6NJ_G0032311.1 mouse_genomes_project 7 24609936 24631609 + Megf8 protein_coding retained_intron MGP_C57BL6NJ_T0016377.1 MGP_C57BL6NJ_G0014422.1 mouse_genomes_project 7 136882976 136883264 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086046.1 MGP_C57BL6NJ_G0033157.1 mouse_genomes_project 7 110904905 110905856 + MGP_C57BL6NJ_P0086046 Olfr628 protein_coding protein_coding MGP_C57BL6NJ_T0085462.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95608932 95790145 + protein_coding retained_intron MGP_C57BL6NJ_T0085463.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95608956 95835302 + MGP_C57BL6NJ_P0085463 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085464.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95609074 95619935 + protein_coding processed_transcript MGP_C57BL6NJ_T0085465.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95609426 95832557 + protein_coding retained_intron MGP_C57BL6NJ_T0085466.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95718706 95805553 + protein_coding processed_transcript MGP_C57BL6NJ_T0085467.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95721892 95805968 + protein_coding processed_transcript MGP_C57BL6NJ_T0085468.1 MGP_C57BL6NJ_G0032981.1 mouse_genomes_project 7 95809384 95835367 + MGP_C57BL6NJ_P0085468 protein_coding protein_coding MGP_C57BL6NJ_T0086335.1 MGP_C57BL6NJ_G0033329.1 mouse_genomes_project 7 117009822 117020046 - MGP_C57BL6NJ_P0086335 Nlrp10 protein_coding protein_coding MGP_C57BL6NJ_T0009166.1 MGP_C57BL6NJ_G0007389.1 mouse_genomes_project 7 106348549 106351747 + Gm10605 lincRNA lincRNA MGP_C57BL6NJ_T0009167.1 MGP_C57BL6NJ_G0007389.1 mouse_genomes_project 7 106348752 106354325 + Gm10605 lincRNA lincRNA MGP_C57BL6NJ_T0084481.1 MGP_C57BL6NJ_G0032740.1 mouse_genomes_project 7 48579034 48649833 - MGP_C57BL6NJ_P0084481 Abcc6 protein_coding protein_coding MGP_C57BL6NJ_T0084482.1 MGP_C57BL6NJ_G0032740.1 mouse_genomes_project 7 48579550 48580341 - Abcc6 protein_coding retained_intron MGP_C57BL6NJ_T0084483.1 MGP_C57BL6NJ_G0032740.1 mouse_genomes_project 7 48609919 48614312 - Abcc6 protein_coding retained_intron MGP_C57BL6NJ_T0016111.1 MGP_C57BL6NJ_G0014156.1 mouse_genomes_project 7 933098 933930 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016129.1 MGP_C57BL6NJ_G0014174.1 mouse_genomes_project 7 10143853 10144508 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005318.1 MGP_C57BL6NJ_G0004525.1 mouse_genomes_project 7 18112526 18113774 + 1700058P15Rik antisense antisense MGP_C57BL6NJ_T0008991.1 MGP_C57BL6NJ_G0007261.1 mouse_genomes_project 7 18255694 18266181 - Gm26852 lincRNA lincRNA MGP_C57BL6NJ_T0088122.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969747 151977896 - MGP_C57BL6NJ_P0088122 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088123.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969752 151977831 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088124.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969752 151977635 - MGP_C57BL6NJ_P0088124 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088125.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969752 151974598 - MGP_C57BL6NJ_P0088125 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088126.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969752 151977641 - MGP_C57BL6NJ_P0088126 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088127.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969755 151975345 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088128.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969755 151977642 - MGP_C57BL6NJ_P0088128 Slc25a22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088129.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151969759 151972757 - MGP_C57BL6NJ_P0088129 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088130.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151970957 151972042 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088131.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971023 151972063 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088132.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971189 151971602 - MGP_C57BL6NJ_P0088132 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088133.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971371 151972852 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088134.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971579 151975401 - MGP_C57BL6NJ_P0088134 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088135.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971629 151974427 - MGP_C57BL6NJ_P0088135 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088136.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971642 151974319 - MGP_C57BL6NJ_P0088136 Slc25a22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088137.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971646 151974011 - MGP_C57BL6NJ_P0088137 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088138.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971896 151973974 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088139.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151971910 151977597 - MGP_C57BL6NJ_P0088139 Slc25a22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088140.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151972048 151975327 - Slc25a22 protein_coding processed_transcript MGP_C57BL6NJ_T0088141.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151972114 151977596 - MGP_C57BL6NJ_P0088141 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088142.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151972588 151975328 - Slc25a22 protein_coding retained_intron MGP_C57BL6NJ_T0088143.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151972704 151974604 - MGP_C57BL6NJ_P0088143 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088144.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151973600 151974608 - MGP_C57BL6NJ_P0088144 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088145.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151973933 151974547 - MGP_C57BL6NJ_P0088145 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0088146.1 MGP_C57BL6NJ_G0033723.1 mouse_genomes_project 7 151973965 151974598 - MGP_C57BL6NJ_P0088146 Slc25a22 protein_coding protein_coding MGP_C57BL6NJ_T0101848.1 MGP_C57BL6NJ_G0039894.1 mouse_genomes_project 7 35990099 35990229 - Gm25922 snoRNA snoRNA MGP_C57BL6NJ_T0103392.1 MGP_C57BL6NJ_G0041184.1 mouse_genomes_project 7 31490714 31491972 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086399.1 MGP_C57BL6NJ_G0033348.1 mouse_genomes_project 7 118229481 118266229 + MGP_C57BL6NJ_P0086399 Zfp143 protein_coding protein_coding MGP_C57BL6NJ_T0086400.1 MGP_C57BL6NJ_G0033348.1 mouse_genomes_project 7 118229489 118266224 + MGP_C57BL6NJ_P0086400 Zfp143 protein_coding protein_coding MGP_C57BL6NJ_T0011953.1 MGP_C57BL6NJ_G0010038.1 mouse_genomes_project 7 84422223 84422481 - Gm24224 misc_RNA misc_RNA MGP_C57BL6NJ_T0005472.1 MGP_C57BL6NJ_G0004637.1 mouse_genomes_project 7 153275507 153287829 + Igf2os antisense antisense MGP_C57BL6NJ_T0005473.1 MGP_C57BL6NJ_G0004637.1 mouse_genomes_project 7 153275526 153276516 + Igf2os antisense antisense MGP_C57BL6NJ_T0005474.1 MGP_C57BL6NJ_G0004637.1 mouse_genomes_project 7 153280958 153281913 + Igf2os antisense antisense MGP_C57BL6NJ_T0100587.1 MGP_C57BL6NJ_G0038633.1 mouse_genomes_project 7 55217823 55217979 - Gm22211 snRNA snRNA MGP_C57BL6NJ_T0084936.1 MGP_C57BL6NJ_G0032851.1 mouse_genomes_project 7 78029335 78075261 + MGP_C57BL6NJ_P0084936 Rgma protein_coding protein_coding MGP_C57BL6NJ_T0084937.1 MGP_C57BL6NJ_G0032851.1 mouse_genomes_project 7 78044620 78065947 + MGP_C57BL6NJ_P0084937 Rgma protein_coding protein_coding MGP_C57BL6NJ_T0084938.1 MGP_C57BL6NJ_G0032851.1 mouse_genomes_project 7 78044736 78046708 + Rgma protein_coding retained_intron MGP_C57BL6NJ_T0085242.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85937835 86043153 - MGP_C57BL6NJ_P0085242 Iqgap1 protein_coding protein_coding MGP_C57BL6NJ_T0085243.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85954789 85958259 - MGP_C57BL6NJ_P0085243 Iqgap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085244.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85970674 85973477 - Iqgap1 protein_coding retained_intron MGP_C57BL6NJ_T0085245.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85980245 86043000 - Iqgap1 protein_coding retained_intron MGP_C57BL6NJ_T0085246.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85986981 86043018 - Iqgap1 protein_coding retained_intron MGP_C57BL6NJ_T0085247.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 85994392 86058523 - MGP_C57BL6NJ_P0085247 Iqgap1 protein_coding protein_coding MGP_C57BL6NJ_T0085248.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 86000212 86068138 - MGP_C57BL6NJ_P0085248 Iqgap1 protein_coding protein_coding MGP_C57BL6NJ_T0085249.1 MGP_C57BL6NJ_G0032901.1 mouse_genomes_project 7 86033791 86043009 - Iqgap1 protein_coding retained_intron MGP_C57BL6NJ_T0005449.1 MGP_C57BL6NJ_G0004618.1 mouse_genomes_project 7 133141239 133153549 - Gm27040 antisense antisense MGP_C57BL6NJ_T0085031.1 MGP_C57BL6NJ_G0032866.1 mouse_genomes_project 7 84099581 84162337 + MGP_C57BL6NJ_P0085031 Acan protein_coding protein_coding MGP_C57BL6NJ_T0085032.1 MGP_C57BL6NJ_G0032866.1 mouse_genomes_project 7 84146986 84161865 + MGP_C57BL6NJ_P0085032 Acan protein_coding protein_coding MGP_C57BL6NJ_T0009125.1 MGP_C57BL6NJ_G0007366.1 mouse_genomes_project 7 83864010 83866949 - Gm44730 lincRNA lincRNA MGP_C57BL6NJ_T0082103.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10913041 10918590 + MGP_C57BL6NJ_P0082103 Zfp446 protein_coding protein_coding MGP_C57BL6NJ_T0082104.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10913041 10919503 + MGP_C57BL6NJ_P0082104 Zfp446 protein_coding protein_coding MGP_C57BL6NJ_T0082105.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10913041 10918590 + MGP_C57BL6NJ_P0082105 Zfp446 protein_coding protein_coding MGP_C57BL6NJ_T0082106.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10913086 10916657 + Zfp446 protein_coding retained_intron MGP_C57BL6NJ_T0082107.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10913431 10919509 + MGP_C57BL6NJ_P0082107 Zfp446 protein_coding protein_coding MGP_C57BL6NJ_T0082108.1 MGP_C57BL6NJ_G0032101.1 mouse_genomes_project 7 10914713 10919534 + Zfp446 protein_coding retained_intron MGP_C57BL6NJ_T0084167.1 MGP_C57BL6NJ_G0032658.1 mouse_genomes_project 7 47163249 47174805 + MGP_C57BL6NJ_P0084167 Izumo2 protein_coding protein_coding MGP_C57BL6NJ_T0083129.1 MGP_C57BL6NJ_G0032397.1 mouse_genomes_project 7 28114833 28123287 + MGP_C57BL6NJ_P0083129 Lrfn1 protein_coding protein_coding MGP_C57BL6NJ_T0083130.1 MGP_C57BL6NJ_G0032397.1 mouse_genomes_project 7 28115001 28125895 + MGP_C57BL6NJ_P0083130 Lrfn1 protein_coding protein_coding MGP_C57BL6NJ_T0083131.1 MGP_C57BL6NJ_G0032397.1 mouse_genomes_project 7 28115440 28124413 + Lrfn1 protein_coding retained_intron MGP_C57BL6NJ_T0083132.1 MGP_C57BL6NJ_G0032397.1 mouse_genomes_project 7 28122659 28125830 + MGP_C57BL6NJ_P0083132 Lrfn1 protein_coding protein_coding MGP_C57BL6NJ_T0083133.1 MGP_C57BL6NJ_G0032397.1 mouse_genomes_project 7 28122659 28137330 + MGP_C57BL6NJ_P0083133 Lrfn1 protein_coding protein_coding MGP_C57BL6NJ_T0009044.1 MGP_C57BL6NJ_G0007304.1 mouse_genomes_project 7 42522828 42532061 + Gm28307 lincRNA lincRNA MGP_C57BL6NJ_T0005335.1 MGP_C57BL6NJ_G0004538.1 mouse_genomes_project 7 26728704 26737374 - Gm15567 antisense antisense MGP_C57BL6NJ_T0083264.1 MGP_C57BL6NJ_G0032428.1 mouse_genomes_project 7 29047623 29057008 + MGP_C57BL6NJ_P0083264 Yif1b protein_coding protein_coding MGP_C57BL6NJ_T0083265.1 MGP_C57BL6NJ_G0032428.1 mouse_genomes_project 7 29047647 29057008 + MGP_C57BL6NJ_P0083265 Yif1b protein_coding protein_coding MGP_C57BL6NJ_T0083266.1 MGP_C57BL6NJ_G0032428.1 mouse_genomes_project 7 29047663 29054320 + MGP_C57BL6NJ_P0083266 Yif1b protein_coding protein_coding MGP_C57BL6NJ_T0083267.1 MGP_C57BL6NJ_G0032428.1 mouse_genomes_project 7 29047746 29057072 + MGP_C57BL6NJ_P0083267 Yif1b protein_coding protein_coding MGP_C57BL6NJ_T0083268.1 MGP_C57BL6NJ_G0032428.1 mouse_genomes_project 7 29047767 29055473 + Yif1b protein_coding processed_transcript MGP_C57BL6NJ_T0082651.1 MGP_C57BL6NJ_G0032272.1 mouse_genomes_project 7 23389266 23390121 - MGP_C57BL6NJ_P0082651 Tescl protein_coding protein_coding MGP_C57BL6NJ_T0100599.1 MGP_C57BL6NJ_G0038645.1 mouse_genomes_project 7 89683027 89683185 + Gm22177 snRNA snRNA MGP_C57BL6NJ_T0016193.1 MGP_C57BL6NJ_G0014238.1 mouse_genomes_project 7 31594742 31595199 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086308.1 MGP_C57BL6NJ_G0033303.1 mouse_genomes_project 7 116082360 116083299 + MGP_C57BL6NJ_P0086308 Olfr481 protein_coding protein_coding MGP_C57BL6NJ_T0088245.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152922037 152935188 - Ifitm10 protein_coding processed_transcript MGP_C57BL6NJ_T0088246.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152922310 152974312 - MGP_C57BL6NJ_P0088246 Ifitm10 protein_coding protein_coding MGP_C57BL6NJ_T0088247.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152922330 152974140 - Ifitm10 protein_coding processed_transcript MGP_C57BL6NJ_T0088248.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152952576 152974130 - MGP_C57BL6NJ_P0088248 Ifitm10 protein_coding protein_coding MGP_C57BL6NJ_T0088249.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152952990 152975624 - MGP_C57BL6NJ_P0088249 Ifitm10 protein_coding protein_coding MGP_C57BL6NJ_T0088250.1 MGP_C57BL6NJ_G0033747.1 mouse_genomes_project 7 152973013 152974752 - Ifitm10 protein_coding processed_transcript MGP_C57BL6NJ_T0005397.1 MGP_C57BL6NJ_G0004584.1 mouse_genomes_project 7 84854211 84856691 + antisense antisense MGP_C57BL6NJ_T0016227.1 MGP_C57BL6NJ_G0014272.1 mouse_genomes_project 7 41228083 41228547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009057.1 MGP_C57BL6NJ_G0007313.1 mouse_genomes_project 7 46115928 46117256 - Gm44707 lincRNA lincRNA MGP_C57BL6NJ_T0011094.1 MGP_C57BL6NJ_G0009179.1 mouse_genomes_project 7 17930293 17930358 + Mir3100 miRNA miRNA MGP_C57BL6NJ_T0011149.1 MGP_C57BL6NJ_G0009234.1 mouse_genomes_project 7 65659306 65659401 - Mir344 miRNA miRNA MGP_C57BL6NJ_T0081930.1 MGP_C57BL6NJ_G0032009.1 mouse_genomes_project 7 1853676 1878904 - MGP_C57BL6NJ_P0081930 Isoc2b protein_coding protein_coding MGP_C57BL6NJ_T0082945.1 MGP_C57BL6NJ_G0032350.1 mouse_genomes_project 7 26660496 26662762 - Snrpa protein_coding retained_intron MGP_C57BL6NJ_T0082946.1 MGP_C57BL6NJ_G0032350.1 mouse_genomes_project 7 26660836 26670139 - MGP_C57BL6NJ_P0082946 Snrpa protein_coding protein_coding MGP_C57BL6NJ_T0082947.1 MGP_C57BL6NJ_G0032350.1 mouse_genomes_project 7 26661042 26669799 - MGP_C57BL6NJ_P0082947 Snrpa protein_coding protein_coding MGP_C57BL6NJ_T0082948.1 MGP_C57BL6NJ_G0032350.1 mouse_genomes_project 7 26665581 26670063 - MGP_C57BL6NJ_P0082948 Snrpa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082949.1 MGP_C57BL6NJ_G0032350.1 mouse_genomes_project 7 26668379 26670192 - Snrpa protein_coding retained_intron MGP_C57BL6NJ_T0103545.1 MGP_C57BL6NJ_G0041337.1 mouse_genomes_project 7 114095044 114313015 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086268.1 MGP_C57BL6NJ_G0033270.1 mouse_genomes_project 7 114729617 114730565 + MGP_C57BL6NJ_P0086268 Olfr704 protein_coding protein_coding MGP_C57BL6NJ_T0086122.1 MGP_C57BL6NJ_G0033213.1 mouse_genomes_project 7 112183371 112185212 - MGP_C57BL6NJ_P0086122 protein_coding protein_coding MGP_C57BL6NJ_T0083678.1 MGP_C57BL6NJ_G0032515.1 mouse_genomes_project 7 31358180 31359483 - MGP_C57BL6NJ_P0083678 Scgb1b2 protein_coding protein_coding MGP_C57BL6NJ_T0100573.1 MGP_C57BL6NJ_G0038619.1 mouse_genomes_project 7 17294179 17294286 + Gm26062 snRNA snRNA MGP_C57BL6NJ_T0084616.1 MGP_C57BL6NJ_G0032783.1 mouse_genomes_project 7 52742408 52757298 + MGP_C57BL6NJ_P0084616 Htatip2 protein_coding protein_coding MGP_C57BL6NJ_T0084617.1 MGP_C57BL6NJ_G0032783.1 mouse_genomes_project 7 52742516 52757302 + MGP_C57BL6NJ_P0084617 Htatip2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083269.1 MGP_C57BL6NJ_G0032429.1 mouse_genomes_project 7 29056039 29057911 - MGP_C57BL6NJ_P0083269 2200002D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0083270.1 MGP_C57BL6NJ_G0032429.1 mouse_genomes_project 7 29057050 29057817 - 2200002D01Rik protein_coding retained_intron MGP_C57BL6NJ_T0011969.1 MGP_C57BL6NJ_G0010054.1 mouse_genomes_project 7 154111608 154111669 + Gm27901 misc_RNA misc_RNA MGP_C57BL6NJ_T0011115.1 MGP_C57BL6NJ_G0009200.1 mouse_genomes_project 7 31108302 31108362 - Mir7050 miRNA miRNA MGP_C57BL6NJ_T0083356.1 MGP_C57BL6NJ_G0032451.1 mouse_genomes_project 7 30066274 30077906 - MGP_C57BL6NJ_P0083356 Zfp146 protein_coding protein_coding MGP_C57BL6NJ_T0083357.1 MGP_C57BL6NJ_G0032451.1 mouse_genomes_project 7 30067724 30068374 - Zfp146 protein_coding processed_transcript MGP_C57BL6NJ_T0100623.1 MGP_C57BL6NJ_G0038669.1 mouse_genomes_project 7 136330611 136330718 - Gm23445 snRNA snRNA MGP_C57BL6NJ_T0011084.1 MGP_C57BL6NJ_G0009169.1 mouse_genomes_project 7 338136 338227 + Gm23450 miRNA miRNA MGP_C57BL6NJ_T0082405.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17855909 17892993 + MGP_C57BL6NJ_P0082405 Sympk protein_coding protein_coding MGP_C57BL6NJ_T0082406.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17855952 17874428 + MGP_C57BL6NJ_P0082406 Sympk protein_coding protein_coding MGP_C57BL6NJ_T0082407.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17855955 17873544 + Sympk protein_coding retained_intron MGP_C57BL6NJ_T0082408.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17855958 17890129 + MGP_C57BL6NJ_P0082408 Sympk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082409.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17884079 17888439 + Sympk protein_coding processed_transcript MGP_C57BL6NJ_T0082410.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17890712 17892988 + Sympk protein_coding processed_transcript MGP_C57BL6NJ_T0082411.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17890779 17892994 + MGP_C57BL6NJ_P0082411 Sympk protein_coding protein_coding MGP_C57BL6NJ_T0082412.1 MGP_C57BL6NJ_G0032201.1 mouse_genomes_project 7 17890809 17892260 + Sympk protein_coding retained_intron MGP_C57BL6NJ_T0085980.1 MGP_C57BL6NJ_G0033095.1 mouse_genomes_project 7 109516022 109518550 - MGP_C57BL6NJ_P0085980 Olfr545 protein_coding protein_coding MGP_C57BL6NJ_T0101854.1 MGP_C57BL6NJ_G0039900.1 mouse_genomes_project 7 47626654 47626741 - Snord35b snoRNA snoRNA MGP_C57BL6NJ_T0086712.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128619049 128678997 + MGP_C57BL6NJ_P0086712 2610020H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0086713.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128619053 128678997 + MGP_C57BL6NJ_P0086713 2610020H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0086714.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128619194 128645701 + 2610020H08Rik protein_coding retained_intron MGP_C57BL6NJ_T0086715.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128619423 128678867 + MGP_C57BL6NJ_P0086715 2610020H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0086716.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128648944 128662959 + 2610020H08Rik protein_coding processed_transcript MGP_C57BL6NJ_T0086717.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128655729 128658189 + 2610020H08Rik protein_coding retained_intron MGP_C57BL6NJ_T0086718.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128664485 128674093 + 2610020H08Rik protein_coding processed_transcript MGP_C57BL6NJ_T0086719.1 MGP_C57BL6NJ_G0033413.1 mouse_genomes_project 7 128674259 128675490 + 2610020H08Rik protein_coding retained_intron MGP_C57BL6NJ_T0082058.1 MGP_C57BL6NJ_G0032081.1 mouse_genomes_project 7 10080412 10081354 + MGP_C57BL6NJ_P0082058 Vmn1r78 protein_coding protein_coding MGP_C57BL6NJ_T0082470.1 MGP_C57BL6NJ_G0032216.1 mouse_genomes_project 7 18139918 18153904 + MGP_C57BL6NJ_P0082470 Rtn2 protein_coding protein_coding MGP_C57BL6NJ_T0082471.1 MGP_C57BL6NJ_G0032216.1 mouse_genomes_project 7 18148836 18153899 + MGP_C57BL6NJ_P0082471 Rtn2 protein_coding protein_coding MGP_C57BL6NJ_T0082278.1 MGP_C57BL6NJ_G0032153.1 mouse_genomes_project 7 14771977 14836032 - MGP_C57BL6NJ_P0082278 Sae1 protein_coding protein_coding MGP_C57BL6NJ_T0083441.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451778 30473355 + MGP_C57BL6NJ_P0083441 Prodh2 protein_coding protein_coding MGP_C57BL6NJ_T0083442.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451814 30468713 + Prodh2 protein_coding processed_transcript MGP_C57BL6NJ_T0083443.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451814 30466502 + MGP_C57BL6NJ_P0083443 Prodh2 protein_coding protein_coding MGP_C57BL6NJ_T0083444.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451815 30452444 + Prodh2 protein_coding retained_intron MGP_C57BL6NJ_T0083445.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451815 30466730 + MGP_C57BL6NJ_P0083445 Prodh2 protein_coding protein_coding MGP_C57BL6NJ_T0083446.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451837 30466591 + MGP_C57BL6NJ_P0083446 Prodh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083447.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30451936 30466798 + MGP_C57BL6NJ_P0083447 Prodh2 protein_coding protein_coding MGP_C57BL6NJ_T0083448.1 MGP_C57BL6NJ_G0032473.1 mouse_genomes_project 7 30466829 30472991 + MGP_C57BL6NJ_P0083448 Prodh2 protein_coding protein_coding MGP_C57BL6NJ_T0084653.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138175 59142549 + MGP_C57BL6NJ_P0084653 Siglech protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084654.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138181 59143502 + MGP_C57BL6NJ_P0084654 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084655.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138181 59143502 + MGP_C57BL6NJ_P0084655 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084656.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138223 59148857 + MGP_C57BL6NJ_P0084656 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084657.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138223 59148646 + MGP_C57BL6NJ_P0084657 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084658.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138233 59147630 + MGP_C57BL6NJ_P0084658 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084659.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138233 59147584 + MGP_C57BL6NJ_P0084659 Siglech protein_coding protein_coding MGP_C57BL6NJ_T0084660.1 MGP_C57BL6NJ_G0032795.1 mouse_genomes_project 7 59138258 59148949 + MGP_C57BL6NJ_P0084660 Siglech protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085364.1 MGP_C57BL6NJ_G0032931.1 mouse_genomes_project 7 89113873 89124231 + MGP_C57BL6NJ_P0085364 Stard5 protein_coding protein_coding MGP_C57BL6NJ_T0085365.1 MGP_C57BL6NJ_G0032931.1 mouse_genomes_project 7 89113914 89115384 + Stard5 protein_coding retained_intron MGP_C57BL6NJ_T0085366.1 MGP_C57BL6NJ_G0032931.1 mouse_genomes_project 7 89113914 89135040 + MGP_C57BL6NJ_P0085366 Stard5 protein_coding protein_coding MGP_C57BL6NJ_T0085367.1 MGP_C57BL6NJ_G0032931.1 mouse_genomes_project 7 89113930 89119988 + Stard5 protein_coding retained_intron MGP_C57BL6NJ_T0085368.1 MGP_C57BL6NJ_G0032931.1 mouse_genomes_project 7 89114465 89115268 + Stard5 protein_coding processed_transcript MGP_C57BL6NJ_T0009069.1 MGP_C57BL6NJ_G0007323.1 mouse_genomes_project 7 67937982 67961414 + Gm45055 lincRNA lincRNA MGP_C57BL6NJ_T0009070.1 MGP_C57BL6NJ_G0007323.1 mouse_genomes_project 7 67946617 67961384 + Gm45055 lincRNA lincRNA MGP_C57BL6NJ_T0084737.1 MGP_C57BL6NJ_G0032808.1 mouse_genomes_project 7 63428997 63451810 - MGP_C57BL6NJ_P0084737 Snrpn protein_coding protein_coding MGP_C57BL6NJ_T0084738.1 MGP_C57BL6NJ_G0032808.1 mouse_genomes_project 7 63429004 63606320 - MGP_C57BL6NJ_P0084738 Snrpn protein_coding protein_coding MGP_C57BL6NJ_T0083161.1 MGP_C57BL6NJ_G0032408.1 mouse_genomes_project 7 28497389 28505779 - MGP_C57BL6NJ_P0083161 Nfkbib protein_coding protein_coding MGP_C57BL6NJ_T0083162.1 MGP_C57BL6NJ_G0032408.1 mouse_genomes_project 7 28498170 28505653 - MGP_C57BL6NJ_P0083162 Nfkbib protein_coding protein_coding MGP_C57BL6NJ_T0083163.1 MGP_C57BL6NJ_G0032408.1 mouse_genomes_project 7 28500907 28506651 - MGP_C57BL6NJ_P0083163 Nfkbib protein_coding protein_coding MGP_C57BL6NJ_T0087902.1 MGP_C57BL6NJ_G0033653.1 mouse_genomes_project 7 150453658 150457873 + MGP_C57BL6NJ_P0087902 Zfp511 protein_coding protein_coding MGP_C57BL6NJ_T0086303.1 MGP_C57BL6NJ_G0033298.1 mouse_genomes_project 7 115959304 115960237 + MGP_C57BL6NJ_P0086303 Olfr476 protein_coding protein_coding MGP_C57BL6NJ_T0085082.1 MGP_C57BL6NJ_G0032873.1 mouse_genomes_project 7 84684011 84715324 - MGP_C57BL6NJ_P0085082 Rhcg protein_coding protein_coding MGP_C57BL6NJ_T0085083.1 MGP_C57BL6NJ_G0032873.1 mouse_genomes_project 7 84684017 84685578 - MGP_C57BL6NJ_P0085083 Rhcg protein_coding protein_coding MGP_C57BL6NJ_T0085084.1 MGP_C57BL6NJ_G0032873.1 mouse_genomes_project 7 84699489 84703597 - MGP_C57BL6NJ_P0085084 Rhcg protein_coding protein_coding MGP_C57BL6NJ_T0103467.1 MGP_C57BL6NJ_G0041259.1 mouse_genomes_project 7 50519015 50519229 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085940.1 MGP_C57BL6NJ_G0033085.1 mouse_genomes_project 7 109092164 109098130 - MGP_C57BL6NJ_P0085940 Art5 protein_coding protein_coding MGP_C57BL6NJ_T0085941.1 MGP_C57BL6NJ_G0033085.1 mouse_genomes_project 7 109092165 109095515 - MGP_C57BL6NJ_P0085941 Art5 protein_coding protein_coding MGP_C57BL6NJ_T0085942.1 MGP_C57BL6NJ_G0033085.1 mouse_genomes_project 7 109092399 109095225 - MGP_C57BL6NJ_P0085942 Art5 protein_coding protein_coding MGP_C57BL6NJ_T0085943.1 MGP_C57BL6NJ_G0033085.1 mouse_genomes_project 7 109092399 109094779 - MGP_C57BL6NJ_P0085943 Art5 protein_coding protein_coding MGP_C57BL6NJ_T0083928.1 MGP_C57BL6NJ_G0032582.1 mouse_genomes_project 7 44392001 44393635 - protein_coding retained_intron MGP_C57BL6NJ_T0086731.1 MGP_C57BL6NJ_G0033417.1 mouse_genomes_project 7 128952493 128955338 + Tmem159 protein_coding retained_intron MGP_C57BL6NJ_T0086732.1 MGP_C57BL6NJ_G0033417.1 mouse_genomes_project 7 128953612 128971150 + MGP_C57BL6NJ_P0086732 Tmem159 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016296.1 MGP_C57BL6NJ_G0014341.1 mouse_genomes_project 7 78365099 78367675 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100598.1 MGP_C57BL6NJ_G0038644.1 mouse_genomes_project 7 87022756 87022864 + Gm26149 snRNA snRNA MGP_C57BL6NJ_T0083591.1 MGP_C57BL6NJ_G0032501.1 mouse_genomes_project 7 30960751 30990258 - MGP_C57BL6NJ_P0083591 Hamp2 protein_coding protein_coding MGP_C57BL6NJ_T0083592.1 MGP_C57BL6NJ_G0032501.1 mouse_genomes_project 7 30960757 30990756 - MGP_C57BL6NJ_P0083592 Hamp2 protein_coding protein_coding MGP_C57BL6NJ_T0018893.1 MGP_C57BL6NJ_G0016090.1 mouse_genomes_project 7 140627822 140632852 - Gm5602 processed_transcript processed_transcript MGP_C57BL6NJ_T0005375.1 MGP_C57BL6NJ_G0004568.1 mouse_genomes_project 7 48100471 48101553 - antisense antisense MGP_C57BL6NJ_T0084581.1 MGP_C57BL6NJ_G0032773.1 mouse_genomes_project 7 51256093 51257216 + MGP_C57BL6NJ_P0084581 Mrgprb8 protein_coding protein_coding MGP_C57BL6NJ_T0101853.1 MGP_C57BL6NJ_G0039899.1 mouse_genomes_project 7 46645873 46645966 + Gm23991 snoRNA snoRNA MGP_C57BL6NJ_T0087381.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137173458 137228043 - MGP_C57BL6NJ_P0087381 Bcl7c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087382.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137178797 137227897 - MGP_C57BL6NJ_P0087382 Bcl7c protein_coding protein_coding MGP_C57BL6NJ_T0087383.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137178953 137227720 - MGP_C57BL6NJ_P0087383 Bcl7c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087384.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137222547 137227785 - MGP_C57BL6NJ_P0087384 Bcl7c protein_coding protein_coding MGP_C57BL6NJ_T0087385.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137222556 137228191 - MGP_C57BL6NJ_P0087385 Bcl7c protein_coding protein_coding MGP_C57BL6NJ_T0087386.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137222566 137226562 - MGP_C57BL6NJ_P0087386 Bcl7c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087387.1 MGP_C57BL6NJ_G0033541.1 mouse_genomes_project 7 137223372 137227333 - Bcl7c protein_coding processed_transcript MGP_C57BL6NJ_T0103441.1 MGP_C57BL6NJ_G0041233.1 mouse_genomes_project 7 46310274 46318513 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100618.1 MGP_C57BL6NJ_G0038664.1 mouse_genomes_project 7 131323745 131323852 + Gm23614 snRNA snRNA MGP_C57BL6NJ_T0085528.1 MGP_C57BL6NJ_G0032998.1 mouse_genomes_project 7 99099987 99116672 - MGP_C57BL6NJ_P0085528 Ddias protein_coding protein_coding MGP_C57BL6NJ_T0002457.1 MGP_C57BL6NJ_G0002346.1 mouse_genomes_project 7 137540296 137543615 + TEC TEC MGP_C57BL6NJ_T0009082.1 MGP_C57BL6NJ_G0007333.1 mouse_genomes_project 7 72514667 72525214 - Gm16157 lincRNA lincRNA MGP_C57BL6NJ_T0009083.1 MGP_C57BL6NJ_G0007333.1 mouse_genomes_project 7 72515280 72527947 - Gm16157 lincRNA lincRNA MGP_C57BL6NJ_T0088235.1 MGP_C57BL6NJ_G0033739.1 mouse_genomes_project 7 152575484 152627915 - MGP_C57BL6NJ_P0088235 Mob2 protein_coding protein_coding MGP_C57BL6NJ_T0083979.1 MGP_C57BL6NJ_G0032601.1 mouse_genomes_project 7 45672328 45681197 + MGP_C57BL6NJ_P0083979 Vsig10l protein_coding protein_coding MGP_C57BL6NJ_T0083980.1 MGP_C57BL6NJ_G0032601.1 mouse_genomes_project 7 45672410 45680222 + MGP_C57BL6NJ_P0083980 Vsig10l protein_coding protein_coding MGP_C57BL6NJ_T0083981.1 MGP_C57BL6NJ_G0032601.1 mouse_genomes_project 7 45673854 45674511 + Vsig10l protein_coding retained_intron MGP_C57BL6NJ_T0083982.1 MGP_C57BL6NJ_G0032601.1 mouse_genomes_project 7 45674891 45676856 + Vsig10l protein_coding processed_transcript MGP_C57BL6NJ_T0083983.1 MGP_C57BL6NJ_G0032601.1 mouse_genomes_project 7 45676792 45680177 + MGP_C57BL6NJ_P0083983 Vsig10l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011155.1 MGP_C57BL6NJ_G0009240.1 mouse_genomes_project 7 68142195 68142301 + Mir211 miRNA miRNA MGP_C57BL6NJ_T0085450.1 MGP_C57BL6NJ_G0032976.1 mouse_genomes_project 7 94341181 94403204 + MGP_C57BL6NJ_P0085450 Rab38 protein_coding protein_coding MGP_C57BL6NJ_T0018804.1 MGP_C57BL6NJ_G0016055.1 mouse_genomes_project 7 44548561 44582172 - processed_transcript lincRNA MGP_C57BL6NJ_T0018805.1 MGP_C57BL6NJ_G0016055.1 mouse_genomes_project 7 44572828 44580692 - processed_transcript TEC MGP_C57BL6NJ_T0100577.1 MGP_C57BL6NJ_G0038623.1 mouse_genomes_project 7 27756513 27756619 + Gm24356 snRNA snRNA MGP_C57BL6NJ_T0083807.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36560082 36579970 + MGP_C57BL6NJ_P0083807 Slc7a9 protein_coding protein_coding MGP_C57BL6NJ_T0083808.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36560323 36579970 + MGP_C57BL6NJ_P0083808 Slc7a9 protein_coding protein_coding MGP_C57BL6NJ_T0083809.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36560384 36561357 + Slc7a9 protein_coding retained_intron MGP_C57BL6NJ_T0083810.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36560386 36579937 + Slc7a9 protein_coding retained_intron MGP_C57BL6NJ_T0083811.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36560456 36579970 + MGP_C57BL6NJ_P0083811 Slc7a9 protein_coding protein_coding MGP_C57BL6NJ_T0083812.1 MGP_C57BL6NJ_G0032553.1 mouse_genomes_project 7 36561122 36569536 + MGP_C57BL6NJ_P0083812 Slc7a9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087958.1 MGP_C57BL6NJ_G0033682.1 mouse_genomes_project 7 151164708 151165811 + MGP_C57BL6NJ_P0087958 Olfr541 protein_coding protein_coding MGP_C57BL6NJ_T0085501.1 MGP_C57BL6NJ_G0032992.1 mouse_genomes_project 7 96524655 96532448 - MGP_C57BL6NJ_P0085501 Tmem126b protein_coding protein_coding MGP_C57BL6NJ_T0085502.1 MGP_C57BL6NJ_G0032992.1 mouse_genomes_project 7 96526384 96532442 - Tmem126b protein_coding retained_intron MGP_C57BL6NJ_T0002466.1 MGP_C57BL6NJ_G0002355.1 mouse_genomes_project 7 155551588 155552932 + TEC TEC MGP_C57BL6NJ_T0101862.1 MGP_C57BL6NJ_G0039908.1 mouse_genomes_project 7 62901860 62901929 - Gm25499 snoRNA snoRNA MGP_C57BL6NJ_T0016346.1 MGP_C57BL6NJ_G0014391.1 mouse_genomes_project 7 111886210 111886572 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016145.1 MGP_C57BL6NJ_G0014190.1 mouse_genomes_project 7 12093431 12093609 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016136.1 MGP_C57BL6NJ_G0014181.1 mouse_genomes_project 7 11486453 11486775 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081909.1 MGP_C57BL6NJ_G0032003.1 mouse_genomes_project 7 1776207 1781911 - MGP_C57BL6NJ_P0081909 Il11 protein_coding protein_coding MGP_C57BL6NJ_T0081910.1 MGP_C57BL6NJ_G0032003.1 mouse_genomes_project 7 1777046 1786664 - MGP_C57BL6NJ_P0081910 Il11 protein_coding protein_coding MGP_C57BL6NJ_T0086435.1 MGP_C57BL6NJ_G0033355.1 mouse_genomes_project 7 119087021 119099639 - MGP_C57BL6NJ_P0086435 Lyve1 protein_coding protein_coding MGP_C57BL6NJ_T0088241.1 MGP_C57BL6NJ_G0033743.1 mouse_genomes_project 7 152847135 152847843 - MGP_C57BL6NJ_P0088241 Gm2431 protein_coding protein_coding MGP_C57BL6NJ_T0103523.1 MGP_C57BL6NJ_G0041315.1 mouse_genomes_project 7 109572318 109573254 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087090.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136152064 136157604 + MGP_C57BL6NJ_P0087090 Mapk3 protein_coding protein_coding MGP_C57BL6NJ_T0087091.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136152387 136158573 + MGP_C57BL6NJ_P0087091 Mapk3 protein_coding protein_coding MGP_C57BL6NJ_T0087092.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136152414 136157603 + MGP_C57BL6NJ_P0087092 Mapk3 protein_coding protein_coding MGP_C57BL6NJ_T0087093.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136152423 136153771 + Mapk3 protein_coding retained_intron MGP_C57BL6NJ_T0087094.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136152597 136155918 + Mapk3 protein_coding processed_transcript MGP_C57BL6NJ_T0087095.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136153512 136157331 + MGP_C57BL6NJ_P0087095 Mapk3 protein_coding protein_coding MGP_C57BL6NJ_T0087096.1 MGP_C57BL6NJ_G0033489.1 mouse_genomes_project 7 136156035 136157119 + Mapk3 protein_coding retained_intron MGP_C57BL6NJ_T0087936.1 MGP_C57BL6NJ_G0033662.1 mouse_genomes_project 7 150586889 150587965 - MGP_C57BL6NJ_P0087936 Olfr522 protein_coding protein_coding MGP_C57BL6NJ_T0086022.1 MGP_C57BL6NJ_G0033133.1 mouse_genomes_project 7 110295984 110296920 + MGP_C57BL6NJ_P0086022 Olfr594 protein_coding protein_coding MGP_C57BL6NJ_T0086069.1 MGP_C57BL6NJ_G0033180.1 mouse_genomes_project 7 111310359 111311304 - MGP_C57BL6NJ_P0086069 protein_coding protein_coding MGP_C57BL6NJ_T0086052.1 MGP_C57BL6NJ_G0033163.1 mouse_genomes_project 7 111038292 111039575 - MGP_C57BL6NJ_P0086052 Hbb-bh2 protein_coding protein_coding MGP_C57BL6NJ_T0086783.1 MGP_C57BL6NJ_G0033433.1 mouse_genomes_project 7 130000165 130042659 + MGP_C57BL6NJ_P0086783 Mettl9 protein_coding protein_coding MGP_C57BL6NJ_T0103495.1 MGP_C57BL6NJ_G0041287.1 mouse_genomes_project 7 90825383 90826244 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084007.1 MGP_C57BL6NJ_G0032608.1 mouse_genomes_project 7 45860665 45875238 + MGP_C57BL6NJ_P0084007 Ceacam18 protein_coding protein_coding MGP_C57BL6NJ_T0005304.1 MGP_C57BL6NJ_G0004518.1 mouse_genomes_project 7 1480155 1481804 + Gm15873 antisense antisense MGP_C57BL6NJ_T0005305.1 MGP_C57BL6NJ_G0004518.1 mouse_genomes_project 7 1480253 1484163 + Gm15873 antisense antisense MGP_C57BL6NJ_T0085404.1 MGP_C57BL6NJ_G0032948.1 mouse_genomes_project 7 91333365 91340648 + MGP_C57BL6NJ_P0085404 Vmn2r71 protein_coding protein_coding MGP_C57BL6NJ_T0009041.1 MGP_C57BL6NJ_G0007302.1 mouse_genomes_project 7 41986521 42095418 - Gm28807 lincRNA lincRNA MGP_C57BL6NJ_T0088191.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152038125 152086092 - MGP_C57BL6NJ_P0088191 Chid1 protein_coding protein_coding MGP_C57BL6NJ_T0088192.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152040385 152086054 - Chid1 protein_coding retained_intron MGP_C57BL6NJ_T0088193.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152041036 152079179 - MGP_C57BL6NJ_P0088193 Chid1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088194.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152041036 152086104 - MGP_C57BL6NJ_P0088194 Chid1 protein_coding protein_coding MGP_C57BL6NJ_T0088195.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152058069 152072761 - Chid1 protein_coding processed_transcript MGP_C57BL6NJ_T0088196.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152061708 152085765 - MGP_C57BL6NJ_P0088196 Chid1 protein_coding protein_coding MGP_C57BL6NJ_T0088197.1 MGP_C57BL6NJ_G0033731.1 mouse_genomes_project 7 152078151 152086067 - Chid1 protein_coding retained_intron MGP_C57BL6NJ_T0085774.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107365705 107403043 - MGP_C57BL6NJ_P0085774 protein_coding protein_coding MGP_C57BL6NJ_T0085775.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107365710 107367575 - MGP_C57BL6NJ_P0085775 protein_coding protein_coding MGP_C57BL6NJ_T0085776.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107369169 107394464 - protein_coding processed_transcript MGP_C57BL6NJ_T0085777.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107370524 107411367 - protein_coding processed_transcript MGP_C57BL6NJ_T0085778.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107372501 107425559 - protein_coding processed_transcript MGP_C57BL6NJ_T0085779.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107379857 107403051 - protein_coding processed_transcript MGP_C57BL6NJ_T0085780.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107385131 107403016 - MGP_C57BL6NJ_P0085780 protein_coding protein_coding MGP_C57BL6NJ_T0085781.1 MGP_C57BL6NJ_G0033056.1 mouse_genomes_project 7 107385146 107425256 - protein_coding processed_transcript MGP_C57BL6NJ_T0002354.1 MGP_C57BL6NJ_G0002244.1 mouse_genomes_project 7 38685786 38686987 - TEC TEC MGP_C57BL6NJ_T0082301.1 MGP_C57BL6NJ_G0032162.1 mouse_genomes_project 7 15296145 15303632 - MGP_C57BL6NJ_P0082301 Fkrp protein_coding protein_coding MGP_C57BL6NJ_T0082302.1 MGP_C57BL6NJ_G0032162.1 mouse_genomes_project 7 15298511 15302421 - MGP_C57BL6NJ_P0082302 Fkrp protein_coding protein_coding MGP_C57BL6NJ_T0082303.1 MGP_C57BL6NJ_G0032162.1 mouse_genomes_project 7 15300020 15302593 - Fkrp protein_coding retained_intron MGP_C57BL6NJ_T0082304.1 MGP_C57BL6NJ_G0032162.1 mouse_genomes_project 7 15301643 15303632 - Fkrp protein_coding retained_intron MGP_C57BL6NJ_T0016279.1 MGP_C57BL6NJ_G0014324.1 mouse_genomes_project 7 60273108 60273528 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085250.1 MGP_C57BL6NJ_G0032902.1 mouse_genomes_project 7 86115341 86131100 + MGP_C57BL6NJ_P0085250 Zscan2 protein_coding protein_coding MGP_C57BL6NJ_T0085251.1 MGP_C57BL6NJ_G0032902.1 mouse_genomes_project 7 86115372 86117887 + MGP_C57BL6NJ_P0085251 Zscan2 protein_coding protein_coding MGP_C57BL6NJ_T0085252.1 MGP_C57BL6NJ_G0032902.1 mouse_genomes_project 7 86115374 86132019 + MGP_C57BL6NJ_P0085252 Zscan2 protein_coding protein_coding MGP_C57BL6NJ_T0085253.1 MGP_C57BL6NJ_G0032902.1 mouse_genomes_project 7 86116529 86134222 + MGP_C57BL6NJ_P0085253 Zscan2 protein_coding protein_coding MGP_C57BL6NJ_T0085254.1 MGP_C57BL6NJ_G0032902.1 mouse_genomes_project 7 86117317 86131229 + MGP_C57BL6NJ_P0085254 Zscan2 protein_coding protein_coding MGP_C57BL6NJ_T0084145.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46985584 46989655 - MGP_C57BL6NJ_P0084145 Nr1h2 protein_coding protein_coding MGP_C57BL6NJ_T0084146.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46985584 46989918 - MGP_C57BL6NJ_P0084146 Nr1h2 protein_coding protein_coding MGP_C57BL6NJ_T0084147.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46985585 46989917 - MGP_C57BL6NJ_P0084147 Nr1h2 protein_coding protein_coding MGP_C57BL6NJ_T0084148.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46985603 46989892 - MGP_C57BL6NJ_P0084148 Nr1h2 protein_coding protein_coding MGP_C57BL6NJ_T0084149.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46985620 46989892 - MGP_C57BL6NJ_P0084149 Nr1h2 protein_coding protein_coding MGP_C57BL6NJ_T0084150.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46986270 46989880 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084151.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46986342 46987592 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084152.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46987025 46989920 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084153.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46987108 46987840 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084154.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46988177 46988556 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084155.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46988462 46989892 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084156.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46988561 46989181 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0084157.1 MGP_C57BL6NJ_G0032652.1 mouse_genomes_project 7 46988602 46989868 - Nr1h2 protein_coding retained_intron MGP_C57BL6NJ_T0082026.1 MGP_C57BL6NJ_G0032059.1 mouse_genomes_project 7 4010909 4037439 - MGP_C57BL6NJ_P0082026 Peg3 protein_coding protein_coding MGP_C57BL6NJ_T0082027.1 MGP_C57BL6NJ_G0032059.1 mouse_genomes_project 7 4016412 4037437 - MGP_C57BL6NJ_P0082027 Peg3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082028.1 MGP_C57BL6NJ_G0032059.1 mouse_genomes_project 7 4018713 4030233 - MGP_C57BL6NJ_P0082028 Peg3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082029.1 MGP_C57BL6NJ_G0032059.1 mouse_genomes_project 7 4028950 4037437 - Peg3 protein_coding retained_intron MGP_C57BL6NJ_T0016315.1 MGP_C57BL6NJ_G0014360.1 mouse_genomes_project 7 91523353 91523930 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084646.1 MGP_C57BL6NJ_G0032792.1 mouse_genomes_project 7 55136452 55146454 - MGP_C57BL6NJ_P0084646 Svip protein_coding protein_coding MGP_C57BL6NJ_T0103366.1 MGP_C57BL6NJ_G0041159.1 mouse_genomes_project 7 12830979 12831514 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005383.1 MGP_C57BL6NJ_G0004573.1 mouse_genomes_project 7 60838963 60863329 + Gm9962 antisense antisense MGP_C57BL6NJ_T0086034.1 MGP_C57BL6NJ_G0033145.1 mouse_genomes_project 7 110640300 110641248 - MGP_C57BL6NJ_P0086034 Olfr610 protein_coding protein_coding MGP_C57BL6NJ_T0005450.1 MGP_C57BL6NJ_G0004619.1 mouse_genomes_project 7 134863623 134864965 - Gm44876 antisense antisense MGP_C57BL6NJ_T0016359.1 MGP_C57BL6NJ_G0014404.1 mouse_genomes_project 7 129521133 129521984 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082826.1 MGP_C57BL6NJ_G0032315.1 mouse_genomes_project 7 24751018 24824785 - Ceacam2 protein_coding retained_intron MGP_C57BL6NJ_T0082827.1 MGP_C57BL6NJ_G0032315.1 mouse_genomes_project 7 24800673 24830798 - MGP_C57BL6NJ_P0082827 Ceacam2 protein_coding protein_coding MGP_C57BL6NJ_T0085985.1 MGP_C57BL6NJ_G0033099.1 mouse_genomes_project 7 109610063 109611101 + MGP_C57BL6NJ_P0085985 Olfr550 protein_coding protein_coding MGP_C57BL6NJ_T0088185.1 MGP_C57BL6NJ_G0033729.1 mouse_genomes_project 7 152015929 152019262 - MGP_C57BL6NJ_P0088185 Polr2l protein_coding protein_coding MGP_C57BL6NJ_T0100613.1 MGP_C57BL6NJ_G0038659.1 mouse_genomes_project 7 125268775 125268882 - Gm25423 snRNA snRNA MGP_C57BL6NJ_T0082275.1 MGP_C57BL6NJ_G0032152.1 mouse_genomes_project 7 14753009 14761597 + MGP_C57BL6NJ_P0082275 Bbc3 protein_coding protein_coding MGP_C57BL6NJ_T0082276.1 MGP_C57BL6NJ_G0032152.1 mouse_genomes_project 7 14753848 14757128 + MGP_C57BL6NJ_P0082276 Bbc3 protein_coding protein_coding MGP_C57BL6NJ_T0082277.1 MGP_C57BL6NJ_G0032152.1 mouse_genomes_project 7 14756906 14761087 + Bbc3 protein_coding processed_transcript MGP_C57BL6NJ_T0016298.1 MGP_C57BL6NJ_G0014343.1 mouse_genomes_project 7 79469640 79469871 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082830.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24927808 24933946 + MGP_C57BL6NJ_P0082830 Atp5sl protein_coding protein_coding MGP_C57BL6NJ_T0082831.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24927818 24928934 + Atp5sl protein_coding retained_intron MGP_C57BL6NJ_T0082832.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24927887 24933943 + MGP_C57BL6NJ_P0082832 Atp5sl protein_coding protein_coding MGP_C57BL6NJ_T0082833.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24928931 24930801 + Atp5sl protein_coding retained_intron MGP_C57BL6NJ_T0082834.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24929290 24932477 + MGP_C57BL6NJ_P0082834 Atp5sl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082835.1 MGP_C57BL6NJ_G0032318.1 mouse_genomes_project 7 24929297 24930398 + Atp5sl protein_coding processed_transcript MGP_C57BL6NJ_T0018819.1 MGP_C57BL6NJ_G0016060.1 mouse_genomes_project 7 47883964 47885750 + Mtag2 processed_transcript processed_transcript MGP_C57BL6NJ_T0018820.1 MGP_C57BL6NJ_G0016060.1 mouse_genomes_project 7 47885034 47885750 + Mtag2 processed_transcript pseudogene MGP_C57BL6NJ_T0082074.1 MGP_C57BL6NJ_G0032091.1 mouse_genomes_project 7 10531468 10610544 - MGP_C57BL6NJ_P0082074 protein_coding protein_coding MGP_C57BL6NJ_T0085992.1 MGP_C57BL6NJ_G0033106.1 mouse_genomes_project 7 109705257 109715001 - MGP_C57BL6NJ_P0085992 Trim68 protein_coding protein_coding MGP_C57BL6NJ_T0085944.1 MGP_C57BL6NJ_G0033086.1 mouse_genomes_project 7 109097027 109106422 + MGP_C57BL6NJ_P0085944 Art1 protein_coding protein_coding MGP_C57BL6NJ_T0016374.1 MGP_C57BL6NJ_G0014419.1 mouse_genomes_project 7 136199042 136199346 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083134.1 MGP_C57BL6NJ_G0032398.1 mouse_genomes_project 7 28178888 28185229 - MGP_C57BL6NJ_P0083134 Ifnl2 protein_coding protein_coding MGP_C57BL6NJ_T0084491.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826474 48869617 - MGP_C57BL6NJ_P0084491 Ush1c protein_coding protein_coding MGP_C57BL6NJ_T0084492.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826481 48869628 - MGP_C57BL6NJ_P0084492 Ush1c protein_coding protein_coding MGP_C57BL6NJ_T0084493.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826481 48869615 - MGP_C57BL6NJ_P0084493 Ush1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084494.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826755 48869589 - MGP_C57BL6NJ_P0084494 Ush1c protein_coding protein_coding MGP_C57BL6NJ_T0084495.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826774 48869623 - MGP_C57BL6NJ_P0084495 Ush1c protein_coding protein_coding MGP_C57BL6NJ_T0084496.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826775 48861371 - MGP_C57BL6NJ_P0084496 Ush1c protein_coding protein_coding MGP_C57BL6NJ_T0084497.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48826794 48832873 - Ush1c protein_coding retained_intron MGP_C57BL6NJ_T0084498.1 MGP_C57BL6NJ_G0032744.1 mouse_genomes_project 7 48832150 48850824 - Ush1c protein_coding processed_transcript MGP_C57BL6NJ_T0016373.1 MGP_C57BL6NJ_G0014418.1 mouse_genomes_project 7 136140604 136140966 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016127.1 MGP_C57BL6NJ_G0014172.1 mouse_genomes_project 7 3225899 3226346 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085760.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107303752 107312436 + MGP_C57BL6NJ_P0085760 Ucp2 protein_coding protein_coding MGP_C57BL6NJ_T0085761.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107303779 107307364 + Ucp2 protein_coding retained_intron MGP_C57BL6NJ_T0085762.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107304210 107307579 + MGP_C57BL6NJ_P0085762 Ucp2 protein_coding protein_coding MGP_C57BL6NJ_T0085763.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107304482 107307721 + MGP_C57BL6NJ_P0085763 Ucp2 protein_coding protein_coding MGP_C57BL6NJ_T0085764.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107306494 107308672 + MGP_C57BL6NJ_P0085764 Ucp2 protein_coding protein_coding MGP_C57BL6NJ_T0085765.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107307611 107309041 + Ucp2 protein_coding processed_transcript MGP_C57BL6NJ_T0085766.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107307683 107309156 + Ucp2 protein_coding processed_transcript MGP_C57BL6NJ_T0085767.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107308556 107309027 + Ucp2 protein_coding processed_transcript MGP_C57BL6NJ_T0085768.1 MGP_C57BL6NJ_G0033053.1 mouse_genomes_project 7 107308761 107309718 + Ucp2 protein_coding processed_transcript MGP_C57BL6NJ_T0087760.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143696559 143719707 - Uros protein_coding retained_intron MGP_C57BL6NJ_T0087761.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143696672 143719571 - MGP_C57BL6NJ_P0087761 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087762.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143696672 143719682 - MGP_C57BL6NJ_P0087762 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087763.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143696681 143719894 - MGP_C57BL6NJ_P0087763 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087764.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143697277 143707369 - Uros protein_coding processed_transcript MGP_C57BL6NJ_T0087765.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143702450 143719672 - MGP_C57BL6NJ_P0087765 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087766.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143712387 143713165 - MGP_C57BL6NJ_P0087766 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087767.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143712441 143719670 - MGP_C57BL6NJ_P0087767 Uros protein_coding protein_coding MGP_C57BL6NJ_T0087768.1 MGP_C57BL6NJ_G0033617.1 mouse_genomes_project 7 143712443 143720685 - MGP_C57BL6NJ_P0087768 Uros protein_coding protein_coding MGP_C57BL6NJ_T0084352.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48028866 48067849 + MGP_C57BL6NJ_P0084352 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084353.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48028867 48067302 + MGP_C57BL6NJ_P0084353 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084354.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48028968 48067304 + MGP_C57BL6NJ_P0084354 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084364.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48057289 48067516 + MGP_C57BL6NJ_P0084364 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084365.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48057307 48067309 + MGP_C57BL6NJ_P0084365 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084366.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48058164 48060271 + MGP_C57BL6NJ_P0084366 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084367.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48058185 48067304 + MGP_C57BL6NJ_P0084367 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084368.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48058189 48061525 + MGP_C57BL6NJ_P0084368 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084369.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48058220 48068554 + MGP_C57BL6NJ_P0084369 Tulp2 protein_coding protein_coding MGP_C57BL6NJ_T0084370.1 MGP_C57BL6NJ_G0032709.1 mouse_genomes_project 7 48059391 48059904 + Tulp2 protein_coding processed_transcript MGP_C57BL6NJ_T0016360.1 MGP_C57BL6NJ_G0014405.1 mouse_genomes_project 7 130194714 130195456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086373.1 MGP_C57BL6NJ_G0033340.1 mouse_genomes_project 7 117861209 117865316 - MGP_C57BL6NJ_P0086373 Ascl3 protein_coding protein_coding MGP_C57BL6NJ_T0086865.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132228301 132266820 + Tnrc6a protein_coding processed_transcript MGP_C57BL6NJ_T0086866.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132228593 132301150 + MGP_C57BL6NJ_P0086866 Tnrc6a protein_coding protein_coding MGP_C57BL6NJ_T0086867.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132228597 132302454 + MGP_C57BL6NJ_P0086867 Tnrc6a protein_coding protein_coding MGP_C57BL6NJ_T0086868.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132228672 132283893 + MGP_C57BL6NJ_P0086868 Tnrc6a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086869.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132275323 132277106 + Tnrc6a protein_coding retained_intron MGP_C57BL6NJ_T0086870.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132276832 132301141 + MGP_C57BL6NJ_P0086870 Tnrc6a protein_coding protein_coding MGP_C57BL6NJ_T0086871.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132277588 132281900 + Tnrc6a protein_coding retained_intron MGP_C57BL6NJ_T0086872.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132277847 132280634 + Tnrc6a protein_coding retained_intron MGP_C57BL6NJ_T0086873.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132279059 132280399 + Tnrc6a protein_coding retained_intron MGP_C57BL6NJ_T0086874.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132280416 132286822 + MGP_C57BL6NJ_P0086874 Tnrc6a protein_coding protein_coding MGP_C57BL6NJ_T0086875.1 MGP_C57BL6NJ_G0033453.1 mouse_genomes_project 7 132286121 132300010 + Tnrc6a protein_coding retained_intron MGP_C57BL6NJ_T0082126.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10973624 10976122 - MGP_C57BL6NJ_P0082126 Ube2m protein_coding protein_coding MGP_C57BL6NJ_T0082127.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10973651 10976040 - Ube2m protein_coding processed_transcript MGP_C57BL6NJ_T0082128.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10973721 10976020 - MGP_C57BL6NJ_P0082128 Ube2m protein_coding protein_coding MGP_C57BL6NJ_T0082129.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10973980 10975041 - MGP_C57BL6NJ_P0082129 Ube2m protein_coding protein_coding MGP_C57BL6NJ_T0082130.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10974368 10976139 - Ube2m protein_coding retained_intron MGP_C57BL6NJ_T0082131.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10974834 10976664 - MGP_C57BL6NJ_P0082131 Ube2m protein_coding protein_coding MGP_C57BL6NJ_T0082132.1 MGP_C57BL6NJ_G0032106.1 mouse_genomes_project 7 10974958 10975914 - Ube2m protein_coding processed_transcript MGP_C57BL6NJ_T0081801.1 MGP_C57BL6NJ_G0031984.1 mouse_genomes_project 7 1165124 1170834 + MGP_C57BL6NJ_P0081801 Lilra5 protein_coding protein_coding MGP_C57BL6NJ_T0084399.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48194142 48199935 + Mamstr protein_coding retained_intron MGP_C57BL6NJ_T0084400.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48194142 48195156 + Mamstr protein_coding retained_intron MGP_C57BL6NJ_T0084401.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48194158 48199377 + MGP_C57BL6NJ_P0084401 Mamstr protein_coding protein_coding MGP_C57BL6NJ_T0084402.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48195645 48200687 + Mamstr protein_coding retained_intron MGP_C57BL6NJ_T0084403.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48195941 48199907 + Mamstr protein_coding retained_intron MGP_C57BL6NJ_T0084404.1 MGP_C57BL6NJ_G0032719.1 mouse_genomes_project 7 48198549 48199175 + MGP_C57BL6NJ_P0084404 Mamstr protein_coding protein_coding MGP_C57BL6NJ_T0016293.1 MGP_C57BL6NJ_G0014338.1 mouse_genomes_project 7 77324537 77325525 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016235.1 MGP_C57BL6NJ_G0014280.1 mouse_genomes_project 7 42696479 42697215 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086463.1 MGP_C57BL6NJ_G0033359.1 mouse_genomes_project 7 119745861 120053990 - MGP_C57BL6NJ_P0086463 Galnt18 protein_coding protein_coding MGP_C57BL6NJ_T0086464.1 MGP_C57BL6NJ_G0033359.1 mouse_genomes_project 7 119745861 120053990 - MGP_C57BL6NJ_P0086464 Galnt18 protein_coding protein_coding MGP_C57BL6NJ_T0101907.1 MGP_C57BL6NJ_G0039953.1 mouse_genomes_project 7 152732129 152732223 + Gm25370 snoRNA snoRNA MGP_C57BL6NJ_T0016211.1 MGP_C57BL6NJ_G0014256.1 mouse_genomes_project 7 34264057 34264193 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081969.1 MGP_C57BL6NJ_G0032030.1 mouse_genomes_project 7 2207540 2208840 - MGP_C57BL6NJ_P0081969 protein_coding protein_coding MGP_C57BL6NJ_T0103457.1 MGP_C57BL6NJ_G0041249.1 mouse_genomes_project 7 46588484 46590075 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002447.1 MGP_C57BL6NJ_G0002336.1 mouse_genomes_project 7 135371559 135373101 - TEC TEC MGP_C57BL6NJ_T0088236.1 MGP_C57BL6NJ_G0033740.1 mouse_genomes_project 7 152645120 152660909 - MGP_C57BL6NJ_P0088236 Dusp8 protein_coding protein_coding MGP_C57BL6NJ_T0088237.1 MGP_C57BL6NJ_G0033740.1 mouse_genomes_project 7 152649230 152661480 - MGP_C57BL6NJ_P0088237 Dusp8 protein_coding protein_coding MGP_C57BL6NJ_T0082016.1 MGP_C57BL6NJ_G0032051.1 mouse_genomes_project 7 3755196 3756141 + MGP_C57BL6NJ_P0082016 Olfr1336 protein_coding protein_coding MGP_C57BL6NJ_T0082437.1 MGP_C57BL6NJ_G0032205.1 mouse_genomes_project 7 17938047 17941820 + MGP_C57BL6NJ_P0082437 Six5 protein_coding protein_coding MGP_C57BL6NJ_T0085346.1 MGP_C57BL6NJ_G0032925.1 mouse_genomes_project 7 88054383 88070842 - MGP_C57BL6NJ_P0085346 Saxo2 protein_coding protein_coding MGP_C57BL6NJ_T0085347.1 MGP_C57BL6NJ_G0032925.1 mouse_genomes_project 7 88055887 88070748 - MGP_C57BL6NJ_P0085347 Saxo2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085348.1 MGP_C57BL6NJ_G0032925.1 mouse_genomes_project 7 88056711 88070842 - Saxo2 protein_coding processed_transcript MGP_C57BL6NJ_T0085349.1 MGP_C57BL6NJ_G0032925.1 mouse_genomes_project 7 88063552 88070847 - Saxo2 protein_coding retained_intron MGP_C57BL6NJ_T0085350.1 MGP_C57BL6NJ_G0032925.1 mouse_genomes_project 7 88067579 88070847 - Saxo2 protein_coding processed_transcript MGP_C57BL6NJ_T0082374.1 MGP_C57BL6NJ_G0032187.1 mouse_genomes_project 7 17412854 17458914 - protein_coding processed_transcript MGP_C57BL6NJ_T0016208.1 MGP_C57BL6NJ_G0014253.1 mouse_genomes_project 7 34219514 34384027 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082387.1 MGP_C57BL6NJ_G0032193.1 mouse_genomes_project 7 17702860 17708632 + MGP_C57BL6NJ_P0082387 Pglyrp1 protein_coding protein_coding MGP_C57BL6NJ_T0082388.1 MGP_C57BL6NJ_G0032193.1 mouse_genomes_project 7 17702873 17703881 + Pglyrp1 protein_coding retained_intron MGP_C57BL6NJ_T0016316.1 MGP_C57BL6NJ_G0014361.1 mouse_genomes_project 7 92084019 92084269 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100610.1 MGP_C57BL6NJ_G0038656.1 mouse_genomes_project 7 118152451 118152505 + Gm24842 snRNA snRNA MGP_C57BL6NJ_T0016322.1 MGP_C57BL6NJ_G0014367.1 mouse_genomes_project 7 100847704 100847836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086150.1 MGP_C57BL6NJ_G0033239.1 mouse_genomes_project 7 112929153 112930279 + MGP_C57BL6NJ_P0086150 Olfr692 protein_coding protein_coding MGP_C57BL6NJ_T0084234.1 MGP_C57BL6NJ_G0032670.1 mouse_genomes_project 7 47420573 47437733 + MGP_C57BL6NJ_P0084234 Tsks protein_coding protein_coding MGP_C57BL6NJ_T0084235.1 MGP_C57BL6NJ_G0032670.1 mouse_genomes_project 7 47420573 47437733 + MGP_C57BL6NJ_P0084235 Tsks protein_coding protein_coding MGP_C57BL6NJ_T0016306.1 MGP_C57BL6NJ_G0014351.1 mouse_genomes_project 7 85424239 85424504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009165.1 MGP_C57BL6NJ_G0007388.1 mouse_genomes_project 7 105957786 105967991 - Gm26705 lincRNA lincRNA MGP_C57BL6NJ_T0005395.1 MGP_C57BL6NJ_G0004583.1 mouse_genomes_project 7 84814537 84816610 + 9330171B17Rik antisense antisense MGP_C57BL6NJ_T0005396.1 MGP_C57BL6NJ_G0004583.1 mouse_genomes_project 7 84814625 84816612 + 9330171B17Rik antisense antisense MGP_C57BL6NJ_T0085987.1 MGP_C57BL6NJ_G0033101.1 mouse_genomes_project 7 109635435 109636389 + MGP_C57BL6NJ_P0085987 Olfr552 protein_coding protein_coding MGP_C57BL6NJ_T0016205.1 MGP_C57BL6NJ_G0014250.1 mouse_genomes_project 7 34219512 34384029 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082400.1 MGP_C57BL6NJ_G0032198.1 mouse_genomes_project 7 17817794 17829217 + MGP_C57BL6NJ_P0082400 Mypop protein_coding protein_coding MGP_C57BL6NJ_T0082401.1 MGP_C57BL6NJ_G0032198.1 mouse_genomes_project 7 17817868 17829219 + MGP_C57BL6NJ_P0082401 Mypop protein_coding protein_coding MGP_C57BL6NJ_T0082402.1 MGP_C57BL6NJ_G0032198.1 mouse_genomes_project 7 17818518 17819650 + Mypop protein_coding retained_intron MGP_C57BL6NJ_T0086333.1 MGP_C57BL6NJ_G0033328.1 mouse_genomes_project 7 116976597 116977542 - MGP_C57BL6NJ_P0086333 Olfr519 protein_coding protein_coding MGP_C57BL6NJ_T0086334.1 MGP_C57BL6NJ_G0033328.1 mouse_genomes_project 7 116976597 116977557 - MGP_C57BL6NJ_P0086334 Olfr519 protein_coding protein_coding MGP_C57BL6NJ_T0082990.1 MGP_C57BL6NJ_G0032358.1 mouse_genomes_project 7 26848263 26855485 - MGP_C57BL6NJ_P0082990 Gm20479 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083063.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27652785 27661315 - MGP_C57BL6NJ_P0083063 Psmc4 protein_coding protein_coding MGP_C57BL6NJ_T0083064.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27652794 27658204 - Psmc4 protein_coding retained_intron MGP_C57BL6NJ_T0083065.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27652795 27661270 - Psmc4 protein_coding retained_intron MGP_C57BL6NJ_T0083066.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27653666 27658531 - Psmc4 protein_coding retained_intron MGP_C57BL6NJ_T0083067.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27653743 27658700 - Psmc4 protein_coding processed_transcript MGP_C57BL6NJ_T0083068.1 MGP_C57BL6NJ_G0032378.1 mouse_genomes_project 7 27658438 27661270 - Psmc4 protein_coding retained_intron MGP_C57BL6NJ_T0086127.1 MGP_C57BL6NJ_G0033216.1 mouse_genomes_project 7 112332139 112333090 + MGP_C57BL6NJ_P0086127 Olfr665 protein_coding protein_coding MGP_C57BL6NJ_T0009188.1 MGP_C57BL6NJ_G0007400.1 mouse_genomes_project 7 123499898 123536036 + Gm44944 lincRNA lincRNA MGP_C57BL6NJ_T0009189.1 MGP_C57BL6NJ_G0007400.1 mouse_genomes_project 7 123532892 123536325 + Gm44944 lincRNA lincRNA MGP_C57BL6NJ_T0009190.1 MGP_C57BL6NJ_G0007400.1 mouse_genomes_project 7 123536049 123536354 + Gm44944 lincRNA lincRNA MGP_C57BL6NJ_T0086306.1 MGP_C57BL6NJ_G0033301.1 mouse_genomes_project 7 116052659 116053770 + MGP_C57BL6NJ_P0086306 Olfr479 protein_coding protein_coding MGP_C57BL6NJ_T0103357.1 MGP_C57BL6NJ_G0041150.1 mouse_genomes_project 7 12702699 12703177 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086695.1 MGP_C57BL6NJ_G0033409.1 mouse_genomes_project 7 128503859 128529733 + MGP_C57BL6NJ_P0086695 Acsm4 protein_coding protein_coding MGP_C57BL6NJ_T0103338.1 MGP_C57BL6NJ_G0041131.1 mouse_genomes_project 7 10038153 10039430 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086853.1 MGP_C57BL6NJ_G0033451.1 mouse_genomes_project 7 131753207 131863324 + MGP_C57BL6NJ_P0086853 Cacng3 protein_coding protein_coding MGP_C57BL6NJ_T0086854.1 MGP_C57BL6NJ_G0033451.1 mouse_genomes_project 7 131754106 131862352 + MGP_C57BL6NJ_P0086854 Cacng3 protein_coding protein_coding MGP_C57BL6NJ_T0086855.1 MGP_C57BL6NJ_G0033451.1 mouse_genomes_project 7 131754133 131862471 + MGP_C57BL6NJ_P0086855 Cacng3 protein_coding protein_coding MGP_C57BL6NJ_T0085599.1 MGP_C57BL6NJ_G0033012.1 mouse_genomes_project 7 104315738 104339182 + MGP_C57BL6NJ_P0085599 Clns1a protein_coding protein_coding MGP_C57BL6NJ_T0085600.1 MGP_C57BL6NJ_G0033012.1 mouse_genomes_project 7 104315799 104331869 + Clns1a protein_coding retained_intron MGP_C57BL6NJ_T0085601.1 MGP_C57BL6NJ_G0033012.1 mouse_genomes_project 7 104338097 104341099 + Clns1a protein_coding retained_intron MGP_C57BL6NJ_T0016323.1 MGP_C57BL6NJ_G0014368.1 mouse_genomes_project 7 101010363 101010754 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103398.1 MGP_C57BL6NJ_G0041190.1 mouse_genomes_project 7 31789355 31789554 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085573.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104086758 104149092 + MGP_C57BL6NJ_P0085573 Ints4 protein_coding protein_coding MGP_C57BL6NJ_T0085574.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104086805 104122391 + Ints4 protein_coding retained_intron MGP_C57BL6NJ_T0085575.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104086815 104101781 + Ints4 protein_coding retained_intron MGP_C57BL6NJ_T0085576.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104109149 104116023 + MGP_C57BL6NJ_P0085576 Ints4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085577.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104138169 104142941 + Ints4 protein_coding retained_intron MGP_C57BL6NJ_T0085578.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104142775 104148960 + Ints4 protein_coding retained_intron MGP_C57BL6NJ_T0085579.1 MGP_C57BL6NJ_G0033009.1 mouse_genomes_project 7 104143007 104149093 + Ints4 protein_coding retained_intron MGP_C57BL6NJ_T0088000.1 MGP_C57BL6NJ_G0033694.1 mouse_genomes_project 7 151403782 151411421 + MGP_C57BL6NJ_P0088000 Nlrp6 protein_coding protein_coding MGP_C57BL6NJ_T0088001.1 MGP_C57BL6NJ_G0033694.1 mouse_genomes_project 7 151403782 151412073 + MGP_C57BL6NJ_P0088001 Nlrp6 protein_coding protein_coding MGP_C57BL6NJ_T0088002.1 MGP_C57BL6NJ_G0033694.1 mouse_genomes_project 7 151403951 151410430 + MGP_C57BL6NJ_P0088002 Nlrp6 protein_coding protein_coding MGP_C57BL6NJ_T0088003.1 MGP_C57BL6NJ_G0033694.1 mouse_genomes_project 7 151404986 151405736 + Nlrp6 protein_coding retained_intron MGP_C57BL6NJ_T0103537.1 MGP_C57BL6NJ_G0041329.1 mouse_genomes_project 7 111242142 111242604 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016187.1 MGP_C57BL6NJ_G0014232.1 mouse_genomes_project 7 29714582 29714998 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084131.1 MGP_C57BL6NJ_G0032649.1 mouse_genomes_project 7 46933320 46959064 - MGP_C57BL6NJ_P0084131 Mybpc2 protein_coding protein_coding MGP_C57BL6NJ_T0084132.1 MGP_C57BL6NJ_G0032649.1 mouse_genomes_project 7 46933453 46964363 - MGP_C57BL6NJ_P0084132 Mybpc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084877.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71004337 71135367 + Adamts17 protein_coding retained_intron MGP_C57BL6NJ_T0084878.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71004337 71196524 + Adamts17 protein_coding retained_intron MGP_C57BL6NJ_T0084879.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71004337 71332196 + MGP_C57BL6NJ_P0084879 Adamts17 protein_coding protein_coding MGP_C57BL6NJ_T0084880.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71004415 71332200 + MGP_C57BL6NJ_P0084880 Adamts17 protein_coding protein_coding MGP_C57BL6NJ_T0084881.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71006857 71236496 + Adamts17 protein_coding processed_transcript MGP_C57BL6NJ_T0084882.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71014284 71036453 + Adamts17 protein_coding processed_transcript MGP_C57BL6NJ_T0084883.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71076342 71135367 + Adamts17 protein_coding processed_transcript MGP_C57BL6NJ_T0084884.1 MGP_C57BL6NJ_G0032839.1 mouse_genomes_project 7 71217417 71254044 + MGP_C57BL6NJ_P0084884 Adamts17 protein_coding protein_coding MGP_C57BL6NJ_T0082872.1 MGP_C57BL6NJ_G0032326.1 mouse_genomes_project 7 25045458 25084227 - MGP_C57BL6NJ_P0082872 Hnrnpul1 protein_coding protein_coding MGP_C57BL6NJ_T0082873.1 MGP_C57BL6NJ_G0032326.1 mouse_genomes_project 7 25064635 25084293 - MGP_C57BL6NJ_P0082873 Hnrnpul1 protein_coding protein_coding MGP_C57BL6NJ_T0082874.1 MGP_C57BL6NJ_G0032326.1 mouse_genomes_project 7 25068870 25071166 - Hnrnpul1 protein_coding retained_intron MGP_C57BL6NJ_T0082875.1 MGP_C57BL6NJ_G0032326.1 mouse_genomes_project 7 25071341 25073956 - Hnrnpul1 protein_coding retained_intron MGP_C57BL6NJ_T0087808.1 MGP_C57BL6NJ_G0033631.1 mouse_genomes_project 7 147135904 147372908 + MGP_C57BL6NJ_P0087808 Mgmt protein_coding protein_coding MGP_C57BL6NJ_T0016278.1 MGP_C57BL6NJ_G0014323.1 mouse_genomes_project 7 60253209 60253470 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103443.1 MGP_C57BL6NJ_G0041235.1 mouse_genomes_project 7 46337134 46337864 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016352.1 MGP_C57BL6NJ_G0014397.1 mouse_genomes_project 7 118729251 118729844 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103517.1 MGP_C57BL6NJ_G0041309.1 mouse_genomes_project 7 91963094 91964917 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082222.1 MGP_C57BL6NJ_G0032141.1 mouse_genomes_project 7 14358659 14387061 - MGP_C57BL6NJ_P0082222 Gltscr1 protein_coding protein_coding MGP_C57BL6NJ_T0087869.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149972126 150065432 - MGP_C57BL6NJ_P0087869 protein_coding protein_coding MGP_C57BL6NJ_T0087870.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149972126 149989014 - MGP_C57BL6NJ_P0087870 protein_coding protein_coding MGP_C57BL6NJ_T0087871.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149972126 149977692 - MGP_C57BL6NJ_P0087871 protein_coding protein_coding MGP_C57BL6NJ_T0087872.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149972255 149988994 - protein_coding retained_intron MGP_C57BL6NJ_T0087873.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149972333 150065385 - MGP_C57BL6NJ_P0087873 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087874.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 149984665 149989014 - protein_coding retained_intron MGP_C57BL6NJ_T0087875.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 150014178 150038569 - MGP_C57BL6NJ_P0087875 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087876.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 150014178 150065432 - MGP_C57BL6NJ_P0087876 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087877.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 150021108 150065432 - protein_coding retained_intron MGP_C57BL6NJ_T0087878.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 150055716 150065432 - MGP_C57BL6NJ_P0087878 protein_coding protein_coding MGP_C57BL6NJ_T0087879.1 MGP_C57BL6NJ_G0033646.1 mouse_genomes_project 7 150059884 150065432 - protein_coding retained_intron MGP_C57BL6NJ_T0087550.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 137983126 138029870 - MGP_C57BL6NJ_P0087550 Rgs10 protein_coding protein_coding MGP_C57BL6NJ_T0087551.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 137983390 138003169 - Rgs10 protein_coding processed_transcript MGP_C57BL6NJ_T0087552.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 137983506 137985622 - Rgs10 protein_coding processed_transcript MGP_C57BL6NJ_T0087553.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 137998324 138015086 - Rgs10 protein_coding retained_intron MGP_C57BL6NJ_T0087554.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 138013517 138029860 - MGP_C57BL6NJ_P0087554 Rgs10 protein_coding protein_coding MGP_C57BL6NJ_T0087555.1 MGP_C57BL6NJ_G0033575.1 mouse_genomes_project 7 138013788 138030455 - MGP_C57BL6NJ_P0087555 Rgs10 protein_coding protein_coding MGP_C57BL6NJ_T0084416.1 MGP_C57BL6NJ_G0032725.1 mouse_genomes_project 7 48268645 48277189 - MGP_C57BL6NJ_P0084416 Sphk2 protein_coding protein_coding MGP_C57BL6NJ_T0084417.1 MGP_C57BL6NJ_G0032725.1 mouse_genomes_project 7 48269445 48277089 - MGP_C57BL6NJ_P0084417 Sphk2 protein_coding protein_coding MGP_C57BL6NJ_T0084418.1 MGP_C57BL6NJ_G0032725.1 mouse_genomes_project 7 48269463 48274386 - MGP_C57BL6NJ_P0084418 Sphk2 protein_coding protein_coding MGP_C57BL6NJ_T0084793.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68490267 68768190 + MGP_C57BL6NJ_P0084793 Apba2 protein_coding protein_coding MGP_C57BL6NJ_T0084794.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68490510 68703717 + MGP_C57BL6NJ_P0084794 Apba2 protein_coding protein_coding MGP_C57BL6NJ_T0084795.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68490699 68703781 + MGP_C57BL6NJ_P0084795 Apba2 protein_coding protein_coding MGP_C57BL6NJ_T0084796.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68631502 68768170 + MGP_C57BL6NJ_P0084796 Apba2 protein_coding protein_coding MGP_C57BL6NJ_T0084797.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68742644 68757761 + Apba2 protein_coding processed_transcript MGP_C57BL6NJ_T0084798.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68757081 68767682 + Apba2 protein_coding processed_transcript MGP_C57BL6NJ_T0084799.1 MGP_C57BL6NJ_G0032823.1 mouse_genomes_project 7 68757825 68767717 + MGP_C57BL6NJ_P0084799 Apba2 protein_coding protein_coding MGP_C57BL6NJ_T0084447.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48388755 48395419 - MGP_C57BL6NJ_P0084447 Cyth2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084448.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48388765 48395399 - MGP_C57BL6NJ_P0084448 Cyth2 protein_coding protein_coding MGP_C57BL6NJ_T0084449.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48388877 48395233 - MGP_C57BL6NJ_P0084449 Cyth2 protein_coding protein_coding MGP_C57BL6NJ_T0084450.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48391170 48395389 - Cyth2 protein_coding processed_transcript MGP_C57BL6NJ_T0084451.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48391971 48395698 - MGP_C57BL6NJ_P0084451 Cyth2 protein_coding protein_coding MGP_C57BL6NJ_T0084452.1 MGP_C57BL6NJ_G0032731.1 mouse_genomes_project 7 48392640 48395378 - Cyth2 protein_coding processed_transcript MGP_C57BL6NJ_T0087928.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150558018 150572438 + MGP_C57BL6NJ_P0087928 Mtg1 protein_coding protein_coding MGP_C57BL6NJ_T0087929.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150558103 150562624 + Mtg1 protein_coding retained_intron MGP_C57BL6NJ_T0087930.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150558117 150569125 + Mtg1 protein_coding retained_intron MGP_C57BL6NJ_T0087931.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150558417 150558851 + Mtg1 protein_coding processed_transcript MGP_C57BL6NJ_T0087932.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150560706 150568813 + Mtg1 protein_coding retained_intron MGP_C57BL6NJ_T0087933.1 MGP_C57BL6NJ_G0033660.1 mouse_genomes_project 7 150570610 150572099 + Mtg1 protein_coding processed_transcript MGP_C57BL6NJ_T0009052.1 MGP_C57BL6NJ_G0007310.1 mouse_genomes_project 7 45723223 45728377 - Gm2511 lincRNA lincRNA MGP_C57BL6NJ_T0009053.1 MGP_C57BL6NJ_G0007310.1 mouse_genomes_project 7 45723226 45731029 - Gm2511 lincRNA lincRNA MGP_C57BL6NJ_T0009054.1 MGP_C57BL6NJ_G0007310.1 mouse_genomes_project 7 45727626 45730606 - Gm2511 lincRNA lincRNA MGP_C57BL6NJ_T0018857.1 MGP_C57BL6NJ_G0016070.1 mouse_genomes_project 7 78645845 78655476 + Gm38143 processed_transcript processed_transcript MGP_C57BL6NJ_T0081814.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1406989 1416293 + MGP_C57BL6NJ_P0081814 Eps8l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081815.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1407017 1415550 + MGP_C57BL6NJ_P0081815 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081816.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1407030 1426860 + MGP_C57BL6NJ_P0081816 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081817.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1410815 1417157 + MGP_C57BL6NJ_P0081817 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081818.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411057 1415692 + Eps8l1 protein_coding retained_intron MGP_C57BL6NJ_T0081819.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411064 1416502 + Eps8l1 protein_coding retained_intron MGP_C57BL6NJ_T0081820.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411064 1426698 + MGP_C57BL6NJ_P0081820 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081821.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411091 1416365 + MGP_C57BL6NJ_P0081821 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081822.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411171 1427943 + MGP_C57BL6NJ_P0081822 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081823.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411183 1426696 + MGP_C57BL6NJ_P0081823 Eps8l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081824.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1411191 1416242 + MGP_C57BL6NJ_P0081824 Eps8l1 protein_coding protein_coding MGP_C57BL6NJ_T0081825.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1420253 1420907 + Eps8l1 protein_coding processed_transcript MGP_C57BL6NJ_T0081826.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1424883 1425426 + Eps8l1 protein_coding processed_transcript MGP_C57BL6NJ_T0081827.1 MGP_C57BL6NJ_G0031988.1 mouse_genomes_project 7 1425121 1426700 + MGP_C57BL6NJ_P0081827 Eps8l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081993.1 MGP_C57BL6NJ_G0032042.1 mouse_genomes_project 7 3517870 3552140 + MGP_C57BL6NJ_P0081993 Gm6792 protein_coding protein_coding MGP_C57BL6NJ_T0081994.1 MGP_C57BL6NJ_G0032042.1 mouse_genomes_project 7 3523654 3552347 + Gm6792 protein_coding processed_transcript MGP_C57BL6NJ_T0081995.1 MGP_C57BL6NJ_G0032042.1 mouse_genomes_project 7 3529914 3552140 + MGP_C57BL6NJ_P0081995 Gm6792 protein_coding protein_coding MGP_C57BL6NJ_T0082607.1 MGP_C57BL6NJ_G0032259.1 mouse_genomes_project 7 22919489 22920461 + MGP_C57BL6NJ_P0082607 Vmn1r179 protein_coding protein_coding MGP_C57BL6NJ_T0083823.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744404 36807267 + MGP_C57BL6NJ_P0083823 Ankrd27 protein_coding protein_coding MGP_C57BL6NJ_T0083824.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744410 36774029 + MGP_C57BL6NJ_P0083824 Ankrd27 protein_coding protein_coding MGP_C57BL6NJ_T0083825.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744410 36763137 + MGP_C57BL6NJ_P0083825 Ankrd27 protein_coding protein_coding MGP_C57BL6NJ_T0083826.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744415 36802599 + MGP_C57BL6NJ_P0083826 Ankrd27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083827.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744435 36765383 + MGP_C57BL6NJ_P0083827 Ankrd27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083828.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36744437 36807267 + MGP_C57BL6NJ_P0083828 Ankrd27 protein_coding protein_coding MGP_C57BL6NJ_T0083829.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36762919 36765853 + Ankrd27 protein_coding retained_intron MGP_C57BL6NJ_T0083830.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36777635 36780530 + Ankrd27 protein_coding retained_intron MGP_C57BL6NJ_T0083831.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36781433 36793925 + MGP_C57BL6NJ_P0083831 Ankrd27 protein_coding protein_coding MGP_C57BL6NJ_T0083832.1 MGP_C57BL6NJ_G0032557.1 mouse_genomes_project 7 36784964 36793020 + MGP_C57BL6NJ_P0083832 Ankrd27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101871.1 MGP_C57BL6NJ_G0039917.1 mouse_genomes_project 7 63424851 63424918 - Snord64 snoRNA snoRNA MGP_C57BL6NJ_T0082338.1 MGP_C57BL6NJ_G0032169.1 mouse_genomes_project 7 15442006 15446153 + MGP_C57BL6NJ_P0082338 Pnmal2 protein_coding protein_coding MGP_C57BL6NJ_T0005323.1 MGP_C57BL6NJ_G0004530.1 mouse_genomes_project 7 23050602 23075845 - antisense antisense MGP_C57BL6NJ_T0085422.1 MGP_C57BL6NJ_G0032965.1 mouse_genomes_project 7 92415131 92416315 + MGP_C57BL6NJ_P0085422 protein_coding protein_coding MGP_C57BL6NJ_T0086086.1 MGP_C57BL6NJ_G0033190.1 mouse_genomes_project 7 111515322 111655176 + MGP_C57BL6NJ_P0086086 protein_coding protein_coding MGP_C57BL6NJ_T0103490.1 MGP_C57BL6NJ_G0041282.1 mouse_genomes_project 7 90658144 90658667 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081808.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1371293 1392960 - MGP_C57BL6NJ_P0081808 Rdh13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081809.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1372190 1393008 - MGP_C57BL6NJ_P0081809 Rdh13 protein_coding protein_coding MGP_C57BL6NJ_T0081810.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1382416 1392540 - MGP_C57BL6NJ_P0081810 Rdh13 protein_coding protein_coding MGP_C57BL6NJ_T0081811.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1387769 1392952 - Rdh13 protein_coding retained_intron MGP_C57BL6NJ_T0081812.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1390013 1393001 - Rdh13 protein_coding processed_transcript MGP_C57BL6NJ_T0081813.1 MGP_C57BL6NJ_G0031987.1 mouse_genomes_project 7 1391564 1392985 - Rdh13 protein_coding processed_transcript MGP_C57BL6NJ_T0082198.1 MGP_C57BL6NJ_G0032133.1 mouse_genomes_project 7 13321915 13583529 - MGP_C57BL6NJ_P0082198 protein_coding protein_coding MGP_C57BL6NJ_T0082200.1 MGP_C57BL6NJ_G0032133.1 mouse_genomes_project 7 13322282 13582089 - MGP_C57BL6NJ_P0082200 protein_coding protein_coding MGP_C57BL6NJ_T0082201.1 MGP_C57BL6NJ_G0032133.1 mouse_genomes_project 7 13322286 13583299 - MGP_C57BL6NJ_P0082201 protein_coding protein_coding MGP_C57BL6NJ_T0082202.1 MGP_C57BL6NJ_G0032133.1 mouse_genomes_project 7 13322355 13583324 - MGP_C57BL6NJ_P0082202 protein_coding protein_coding MGP_C57BL6NJ_T0103507.1 MGP_C57BL6NJ_G0041299.1 mouse_genomes_project 7 91536685 91537302 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009103.1 MGP_C57BL6NJ_G0007349.1 mouse_genomes_project 7 77814024 77814404 - Gm28746 lincRNA lincRNA MGP_C57BL6NJ_T0083595.1 MGP_C57BL6NJ_G0032504.1 mouse_genomes_project 7 31019312 31034969 - MGP_C57BL6NJ_P0083595 Lsr protein_coding protein_coding MGP_C57BL6NJ_T0083596.1 MGP_C57BL6NJ_G0032504.1 mouse_genomes_project 7 31019317 31035007 - MGP_C57BL6NJ_P0083596 Lsr protein_coding protein_coding MGP_C57BL6NJ_T0083597.1 MGP_C57BL6NJ_G0032504.1 mouse_genomes_project 7 31019319 31034970 - MGP_C57BL6NJ_P0083597 Lsr protein_coding protein_coding MGP_C57BL6NJ_T0083598.1 MGP_C57BL6NJ_G0032504.1 mouse_genomes_project 7 31019321 31034865 - MGP_C57BL6NJ_P0083598 Lsr protein_coding protein_coding MGP_C57BL6NJ_T0083599.1 MGP_C57BL6NJ_G0032504.1 mouse_genomes_project 7 31019804 31034958 - MGP_C57BL6NJ_P0083599 Lsr protein_coding protein_coding MGP_C57BL6NJ_T0086678.1 MGP_C57BL6NJ_G0033401.1 mouse_genomes_project 7 127750575 127773737 - MGP_C57BL6NJ_P0086678 Gprc5b protein_coding protein_coding MGP_C57BL6NJ_T0002414.1 MGP_C57BL6NJ_G0002303.1 mouse_genomes_project 7 84348542 84353477 + TEC TEC MGP_C57BL6NJ_T0103425.1 MGP_C57BL6NJ_G0041217.1 mouse_genomes_project 7 41044829 41054052 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084565.1 MGP_C57BL6NJ_G0032761.1 mouse_genomes_project 7 49756567 49760730 + MGP_C57BL6NJ_P0084565 Tmem86a protein_coding protein_coding MGP_C57BL6NJ_T0085118.1 MGP_C57BL6NJ_G0032883.1 mouse_genomes_project 7 85052483 85065091 - MGP_C57BL6NJ_P0085118 Arpin protein_coding protein_coding MGP_C57BL6NJ_T0084709.1 MGP_C57BL6NJ_G0032802.1 mouse_genomes_project 7 60120849 60838880 - MGP_C57BL6NJ_P0084709 Gabrg3 protein_coding protein_coding MGP_C57BL6NJ_T0084710.1 MGP_C57BL6NJ_G0032802.1 mouse_genomes_project 7 60614384 60838563 - MGP_C57BL6NJ_P0084710 Gabrg3 protein_coding protein_coding MGP_C57BL6NJ_T0084711.1 MGP_C57BL6NJ_G0032802.1 mouse_genomes_project 7 60773432 60838880 - Gabrg3 protein_coding retained_intron MGP_C57BL6NJ_T0085380.1 MGP_C57BL6NJ_G0032936.1 mouse_genomes_project 7 89377990 89392554 + Mesdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0085381.1 MGP_C57BL6NJ_G0032936.1 mouse_genomes_project 7 89386786 89396146 + MGP_C57BL6NJ_P0085381 Mesdc2 protein_coding protein_coding MGP_C57BL6NJ_T0085382.1 MGP_C57BL6NJ_G0032936.1 mouse_genomes_project 7 89386788 89392381 + MGP_C57BL6NJ_P0085382 Mesdc2 protein_coding protein_coding MGP_C57BL6NJ_T0085383.1 MGP_C57BL6NJ_G0032936.1 mouse_genomes_project 7 89387116 89392694 + MGP_C57BL6NJ_P0085383 Mesdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085047.1 MGP_C57BL6NJ_G0032869.1 mouse_genomes_project 7 84343933 84435247 + MGP_C57BL6NJ_P0085047 Abhd2 protein_coding protein_coding MGP_C57BL6NJ_T0085048.1 MGP_C57BL6NJ_G0032869.1 mouse_genomes_project 7 84343988 84415107 + Abhd2 protein_coding processed_transcript MGP_C57BL6NJ_T0082375.1 MGP_C57BL6NJ_G0032188.1 mouse_genomes_project 7 17439131 17458937 - MGP_C57BL6NJ_P0082375 protein_coding protein_coding MGP_C57BL6NJ_T0016311.1 MGP_C57BL6NJ_G0014356.1 mouse_genomes_project 7 86770393 86771170 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082828.1 MGP_C57BL6NJ_G0032316.1 mouse_genomes_project 7 24803137 24835535 - protein_coding processed_transcript MGP_C57BL6NJ_T0088238.1 MGP_C57BL6NJ_G0033741.1 mouse_genomes_project 7 152781530 152792545 + MGP_C57BL6NJ_P0088238 Krtap5-3 protein_coding protein_coding MGP_C57BL6NJ_T0088239.1 MGP_C57BL6NJ_G0033741.1 mouse_genomes_project 7 152781530 152792545 + MGP_C57BL6NJ_P0088239 Krtap5-3 protein_coding protein_coding MGP_C57BL6NJ_T0084133.1 MGP_C57BL6NJ_G0032650.1 mouse_genomes_project 7 46960400 46966480 - MGP_C57BL6NJ_P0084133 Spib protein_coding protein_coding MGP_C57BL6NJ_T0084134.1 MGP_C57BL6NJ_G0032650.1 mouse_genomes_project 7 46962373 46965685 - MGP_C57BL6NJ_P0084134 Spib protein_coding protein_coding MGP_C57BL6NJ_T0084135.1 MGP_C57BL6NJ_G0032650.1 mouse_genomes_project 7 46962373 46966462 - MGP_C57BL6NJ_P0084135 Spib protein_coding protein_coding MGP_C57BL6NJ_T0083232.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941891 28945591 - MGP_C57BL6NJ_P0083232 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083233.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941892 28945564 - Fam98c protein_coding retained_intron MGP_C57BL6NJ_T0083234.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941892 28945584 - Fam98c protein_coding retained_intron MGP_C57BL6NJ_T0083235.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941892 28945564 - Fam98c protein_coding retained_intron MGP_C57BL6NJ_T0083236.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941892 28945564 - MGP_C57BL6NJ_P0083236 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083237.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941899 28945541 - MGP_C57BL6NJ_P0083237 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083238.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28941934 28945100 - MGP_C57BL6NJ_P0083238 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083239.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28942773 28945615 - MGP_C57BL6NJ_P0083239 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083240.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28942804 28944984 - MGP_C57BL6NJ_P0083240 Fam98c protein_coding protein_coding MGP_C57BL6NJ_T0083241.1 MGP_C57BL6NJ_G0032421.1 mouse_genomes_project 7 28942887 28945584 - Fam98c protein_coding processed_transcript MGP_C57BL6NJ_T0103450.1 MGP_C57BL6NJ_G0041242.1 mouse_genomes_project 7 46420461 46420612 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103489.1 MGP_C57BL6NJ_G0041281.1 mouse_genomes_project 7 90474415 90481103 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085525.1 MGP_C57BL6NJ_G0032997.1 mouse_genomes_project 7 98980589 99077018 + MGP_C57BL6NJ_P0085525 Rab30 protein_coding protein_coding MGP_C57BL6NJ_T0085526.1 MGP_C57BL6NJ_G0032997.1 mouse_genomes_project 7 99059870 99076548 + MGP_C57BL6NJ_P0085526 Rab30 protein_coding protein_coding MGP_C57BL6NJ_T0085527.1 MGP_C57BL6NJ_G0032997.1 mouse_genomes_project 7 99059885 99076545 + MGP_C57BL6NJ_P0085527 Rab30 protein_coding protein_coding MGP_C57BL6NJ_T0018886.1 MGP_C57BL6NJ_G0016086.1 mouse_genomes_project 7 136938311 136949498 + B130055M24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0016309.1 MGP_C57BL6NJ_G0014354.1 mouse_genomes_project 7 86459724 86460072 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084745.1 MGP_C57BL6NJ_G0032815.1 mouse_genomes_project 7 67308467 67652271 + MGP_C57BL6NJ_P0084745 Otud7a protein_coding protein_coding MGP_C57BL6NJ_T0084746.1 MGP_C57BL6NJ_G0032815.1 mouse_genomes_project 7 67308493 67507133 + Otud7a protein_coding processed_transcript MGP_C57BL6NJ_T0084747.1 MGP_C57BL6NJ_G0032815.1 mouse_genomes_project 7 67545559 67651232 + MGP_C57BL6NJ_P0084747 Otud7a protein_coding protein_coding MGP_C57BL6NJ_T0084748.1 MGP_C57BL6NJ_G0032815.1 mouse_genomes_project 7 67583952 67651974 + MGP_C57BL6NJ_P0084748 Otud7a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084749.1 MGP_C57BL6NJ_G0032815.1 mouse_genomes_project 7 67647954 67651168 + MGP_C57BL6NJ_P0084749 Otud7a protein_coding protein_coding MGP_C57BL6NJ_T0085396.1 MGP_C57BL6NJ_G0032941.1 mouse_genomes_project 7 90135768 90202782 - MGP_C57BL6NJ_P0085396 Zfand6 protein_coding protein_coding MGP_C57BL6NJ_T0085397.1 MGP_C57BL6NJ_G0032941.1 mouse_genomes_project 7 90135768 90202792 - MGP_C57BL6NJ_P0085397 Zfand6 protein_coding protein_coding MGP_C57BL6NJ_T0099149.1 MGP_C57BL6NJ_G0037213.1 mouse_genomes_project 7 75207069 75207154 + Gm24880 rRNA rRNA MGP_C57BL6NJ_T0084041.1 MGP_C57BL6NJ_G0032627.1 mouse_genomes_project 7 46311246 46458414 + MGP_C57BL6NJ_P0084041 protein_coding protein_coding MGP_C57BL6NJ_T0011147.1 MGP_C57BL6NJ_G0009232.1 mouse_genomes_project 7 65562462 65562525 - Mir344b miRNA miRNA MGP_C57BL6NJ_T0086834.1 MGP_C57BL6NJ_G0033446.1 mouse_genomes_project 7 131180973 131200067 + MGP_C57BL6NJ_P0086834 Dctn5 protein_coding protein_coding MGP_C57BL6NJ_T0086835.1 MGP_C57BL6NJ_G0033446.1 mouse_genomes_project 7 131180986 131200067 + Dctn5 protein_coding retained_intron MGP_C57BL6NJ_T0086836.1 MGP_C57BL6NJ_G0033446.1 mouse_genomes_project 7 131181004 131183064 + MGP_C57BL6NJ_P0086836 Dctn5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086837.1 MGP_C57BL6NJ_G0033446.1 mouse_genomes_project 7 131191738 131199604 + MGP_C57BL6NJ_P0086837 Dctn5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086102.1 MGP_C57BL6NJ_G0033197.1 mouse_genomes_project 7 111763534 111811857 - MGP_C57BL6NJ_P0086102 Trim30a protein_coding protein_coding MGP_C57BL6NJ_T0086103.1 MGP_C57BL6NJ_G0033197.1 mouse_genomes_project 7 111765854 111767133 - Trim30a protein_coding retained_intron MGP_C57BL6NJ_T0086104.1 MGP_C57BL6NJ_G0033197.1 mouse_genomes_project 7 111765879 111766825 - Trim30a protein_coding processed_transcript MGP_C57BL6NJ_T0086105.1 MGP_C57BL6NJ_G0033197.1 mouse_genomes_project 7 111766194 111766777 - Trim30a protein_coding retained_intron MGP_C57BL6NJ_T0084719.1 MGP_C57BL6NJ_G0032805.1 mouse_genomes_project 7 62187443 62370624 + MGP_C57BL6NJ_P0084719 Atp10a protein_coding protein_coding MGP_C57BL6NJ_T0103408.1 MGP_C57BL6NJ_G0041200.1 mouse_genomes_project 7 34426367 34428160 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103335.1 MGP_C57BL6NJ_G0041128.1 mouse_genomes_project 7 9893219 9893418 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083652.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166841 31185548 - MGP_C57BL6NJ_P0083652 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083653.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166841 31181263 - MGP_C57BL6NJ_P0083653 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083654.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166841 31185556 - MGP_C57BL6NJ_P0083654 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083655.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166841 31185541 - MGP_C57BL6NJ_P0083655 Hpn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083656.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166845 31170631 - MGP_C57BL6NJ_P0083656 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083657.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31166849 31167402 - MGP_C57BL6NJ_P0083657 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083658.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31167354 31168400 - Hpn protein_coding retained_intron MGP_C57BL6NJ_T0083659.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31170309 31171307 - Hpn protein_coding retained_intron MGP_C57BL6NJ_T0083660.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31170614 31171580 - Hpn protein_coding retained_intron MGP_C57BL6NJ_T0083661.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31178764 31182224 - MGP_C57BL6NJ_P0083661 Hpn protein_coding protein_coding MGP_C57BL6NJ_T0083662.1 MGP_C57BL6NJ_G0032511.1 mouse_genomes_project 7 31180831 31181275 - Hpn protein_coding retained_intron MGP_C57BL6NJ_T0101898.1 MGP_C57BL6NJ_G0039944.1 mouse_genomes_project 7 127591163 127591277 + Gm26147 snoRNA snoRNA MGP_C57BL6NJ_T0084163.1 MGP_C57BL6NJ_G0032655.1 mouse_genomes_project 7 47044640 47110465 - MGP_C57BL6NJ_P0084163 Myh14 protein_coding protein_coding MGP_C57BL6NJ_T0084164.1 MGP_C57BL6NJ_G0032655.1 mouse_genomes_project 7 47044640 47110465 - MGP_C57BL6NJ_P0084164 Myh14 protein_coding protein_coding MGP_C57BL6NJ_T0082150.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11250725 11285628 + Lig1 protein_coding processed_transcript MGP_C57BL6NJ_T0082151.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11250755 11285628 + MGP_C57BL6NJ_P0082151 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082152.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252267 11285628 + MGP_C57BL6NJ_P0082152 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082153.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252276 11265200 + MGP_C57BL6NJ_P0082153 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082154.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252296 11285629 + Lig1 protein_coding processed_transcript MGP_C57BL6NJ_T0082155.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252296 11266179 + MGP_C57BL6NJ_P0082155 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082156.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252659 11285636 + Lig1 protein_coding processed_transcript MGP_C57BL6NJ_T0082157.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11252659 11285628 + MGP_C57BL6NJ_P0082157 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082158.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11253828 11285636 + Lig1 protein_coding processed_transcript MGP_C57BL6NJ_T0082159.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11253828 11264927 + MGP_C57BL6NJ_P0082159 Lig1 protein_coding protein_coding MGP_C57BL6NJ_T0082160.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11276491 11280325 + Lig1 protein_coding retained_intron MGP_C57BL6NJ_T0082161.1 MGP_C57BL6NJ_G0032114.1 mouse_genomes_project 7 11281500 11285568 + Lig1 protein_coding retained_intron MGP_C57BL6NJ_T0084931.1 MGP_C57BL6NJ_G0032850.1 mouse_genomes_project 7 76608252 76862871 - MGP_C57BL6NJ_P0084931 Mctp2 protein_coding protein_coding MGP_C57BL6NJ_T0084932.1 MGP_C57BL6NJ_G0032850.1 mouse_genomes_project 7 76610835 76647378 - MGP_C57BL6NJ_P0084932 Mctp2 protein_coding protein_coding MGP_C57BL6NJ_T0084933.1 MGP_C57BL6NJ_G0032850.1 mouse_genomes_project 7 76658507 76699506 - MGP_C57BL6NJ_P0084933 Mctp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084934.1 MGP_C57BL6NJ_G0032850.1 mouse_genomes_project 7 76767132 76771127 - Mctp2 protein_coding retained_intron MGP_C57BL6NJ_T0084935.1 MGP_C57BL6NJ_G0032850.1 mouse_genomes_project 7 76806120 76862871 - Mctp2 protein_coding retained_intron MGP_C57BL6NJ_T0085929.1 MGP_C57BL6NJ_G0033083.1 mouse_genomes_project 7 109060164 109092150 + MGP_C57BL6NJ_P0085929 Xntrpc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085930.1 MGP_C57BL6NJ_G0033083.1 mouse_genomes_project 7 109060164 109091702 + MGP_C57BL6NJ_P0085930 Xntrpc protein_coding protein_coding MGP_C57BL6NJ_T0085932.1 MGP_C57BL6NJ_G0033083.1 mouse_genomes_project 7 109060229 109091620 + MGP_C57BL6NJ_P0085932 Xntrpc protein_coding protein_coding MGP_C57BL6NJ_T0085933.1 MGP_C57BL6NJ_G0033083.1 mouse_genomes_project 7 109070327 109091620 + MGP_C57BL6NJ_P0085933 Xntrpc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085934.1 MGP_C57BL6NJ_G0033083.1 mouse_genomes_project 7 109070331 109091612 + MGP_C57BL6NJ_P0085934 Xntrpc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002358.1 MGP_C57BL6NJ_G0002248.1 mouse_genomes_project 7 41097329 41099699 - TEC TEC MGP_C57BL6NJ_T0002453.1 MGP_C57BL6NJ_G0002342.1 mouse_genomes_project 7 137169065 137170238 - TEC TEC MGP_C57BL6NJ_T0103365.1 MGP_C57BL6NJ_G0041158.1 mouse_genomes_project 7 12830978 13869413 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016229.1 MGP_C57BL6NJ_G0014274.1 mouse_genomes_project 7 41792234 41792628 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084257.1 MGP_C57BL6NJ_G0032684.1 mouse_genomes_project 7 47629183 47633610 - MGP_C57BL6NJ_P0084257 Rpl13a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084258.1 MGP_C57BL6NJ_G0032684.1 mouse_genomes_project 7 47629194 47633641 - MGP_C57BL6NJ_P0084258 Rpl13a protein_coding protein_coding MGP_C57BL6NJ_T0099151.1 MGP_C57BL6NJ_G0037215.1 mouse_genomes_project 7 96331469 96331582 + n-R5s155 rRNA rRNA MGP_C57BL6NJ_T0016391.1 MGP_C57BL6NJ_G0014436.1 mouse_genomes_project 7 149249423 149250350 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009226.1 MGP_C57BL6NJ_G0007423.1 mouse_genomes_project 7 137527910 137530221 - Gm26690 lincRNA lincRNA MGP_C57BL6NJ_T0083302.1 MGP_C57BL6NJ_G0032434.1 mouse_genomes_project 7 29357047 29380842 + MGP_C57BL6NJ_P0083302 protein_coding protein_coding MGP_C57BL6NJ_T0083303.1 MGP_C57BL6NJ_G0032434.1 mouse_genomes_project 7 29379500 29380840 + MGP_C57BL6NJ_P0083303 protein_coding protein_coding MGP_C57BL6NJ_T0103336.1 MGP_C57BL6NJ_G0041129.1 mouse_genomes_project 7 9907113 9908358 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086307.1 MGP_C57BL6NJ_G0033302.1 mouse_genomes_project 7 116065128 116066157 - MGP_C57BL6NJ_P0086307 Olfr480 protein_coding protein_coding MGP_C57BL6NJ_T0085108.1 MGP_C57BL6NJ_G0032879.1 mouse_genomes_project 7 84912533 84914081 - MGP_C57BL6NJ_P0085108 Mesp1 protein_coding protein_coding MGP_C57BL6NJ_T0100588.1 MGP_C57BL6NJ_G0038634.1 mouse_genomes_project 7 56150817 56150925 + Gm22444 snRNA snRNA MGP_C57BL6NJ_T0008978.1 MGP_C57BL6NJ_G0007250.1 mouse_genomes_project 7 346118 347899 - 3300002P13Rik lincRNA lincRNA MGP_C57BL6NJ_T0081721.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 581095 598571 - MGP_C57BL6NJ_P0081721 Mboat7 protein_coding protein_coding MGP_C57BL6NJ_T0081722.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 581099 597166 - MGP_C57BL6NJ_P0081722 Mboat7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081723.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 581708 596915 - MGP_C57BL6NJ_P0081723 Mboat7 protein_coding protein_coding MGP_C57BL6NJ_T0081724.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 582081 589576 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0081725.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 588405 598000 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0081726.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 590651 598286 - MGP_C57BL6NJ_P0081726 Mboat7 protein_coding protein_coding MGP_C57BL6NJ_T0081727.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 591006 597936 - MGP_C57BL6NJ_P0081727 Mboat7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081728.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 591022 597936 - MGP_C57BL6NJ_P0081728 Mboat7 protein_coding protein_coding MGP_C57BL6NJ_T0081729.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 593701 597810 - MGP_C57BL6NJ_P0081729 Mboat7 protein_coding protein_coding MGP_C57BL6NJ_T0081730.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 594130 598010 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0081731.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 594429 597828 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0081732.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 594957 597986 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0081733.1 MGP_C57BL6NJ_G0031971.1 mouse_genomes_project 7 596748 597702 - Mboat7 protein_coding retained_intron MGP_C57BL6NJ_T0083367.1 MGP_C57BL6NJ_G0032455.1 mouse_genomes_project 7 30149318 30159558 - MGP_C57BL6NJ_P0083367 Tbcb protein_coding protein_coding MGP_C57BL6NJ_T0083368.1 MGP_C57BL6NJ_G0032455.1 mouse_genomes_project 7 30149320 30152190 - Tbcb protein_coding processed_transcript MGP_C57BL6NJ_T0083369.1 MGP_C57BL6NJ_G0032455.1 mouse_genomes_project 7 30149324 30152251 - Tbcb protein_coding retained_intron MGP_C57BL6NJ_T0085351.1 MGP_C57BL6NJ_G0032926.1 mouse_genomes_project 7 88070932 88101193 + MGP_C57BL6NJ_P0085351 Efl1 protein_coding protein_coding MGP_C57BL6NJ_T0085352.1 MGP_C57BL6NJ_G0032926.1 mouse_genomes_project 7 88070932 88205575 + MGP_C57BL6NJ_P0085352 Efl1 protein_coding protein_coding MGP_C57BL6NJ_T0085353.1 MGP_C57BL6NJ_G0032926.1 mouse_genomes_project 7 88070947 88125322 + Efl1 protein_coding retained_intron MGP_C57BL6NJ_T0085354.1 MGP_C57BL6NJ_G0032926.1 mouse_genomes_project 7 88070959 88205575 + MGP_C57BL6NJ_P0085354 Efl1 protein_coding protein_coding MGP_C57BL6NJ_T0085355.1 MGP_C57BL6NJ_G0032926.1 mouse_genomes_project 7 88096866 88101182 + Efl1 protein_coding processed_transcript MGP_C57BL6NJ_T0005437.1 MGP_C57BL6NJ_G0004611.1 mouse_genomes_project 7 124881924 124882806 + Gm44777 antisense antisense MGP_C57BL6NJ_T0005438.1 MGP_C57BL6NJ_G0004611.1 mouse_genomes_project 7 124881931 124885944 + Gm44777 antisense antisense MGP_C57BL6NJ_T0005439.1 MGP_C57BL6NJ_G0004611.1 mouse_genomes_project 7 124883673 124886264 + Gm44777 antisense antisense MGP_C57BL6NJ_T0083869.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39321836 39389416 - MGP_C57BL6NJ_P0083869 Uri1 protein_coding protein_coding MGP_C57BL6NJ_T0083870.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39321837 39333150 - Uri1 protein_coding processed_transcript MGP_C57BL6NJ_T0083871.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39322486 39389440 - MGP_C57BL6NJ_P0083871 Uri1 protein_coding protein_coding MGP_C57BL6NJ_T0083872.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39323145 39324373 - MGP_C57BL6NJ_P0083872 Uri1 protein_coding protein_coding MGP_C57BL6NJ_T0083873.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39323208 39393425 - MGP_C57BL6NJ_P0083873 Uri1 protein_coding protein_coding MGP_C57BL6NJ_T0083874.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39328747 39329277 - Uri1 protein_coding processed_transcript MGP_C57BL6NJ_T0083875.1 MGP_C57BL6NJ_G0032563.1 mouse_genomes_project 7 39333126 39389396 - MGP_C57BL6NJ_P0083875 Uri1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016348.1 MGP_C57BL6NJ_G0014393.1 mouse_genomes_project 7 114063078 114064116 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087906.1 MGP_C57BL6NJ_G0033656.1 mouse_genomes_project 7 150513591 150517360 + MGP_C57BL6NJ_P0087906 Prap1 protein_coding protein_coding MGP_C57BL6NJ_T0084411.1 MGP_C57BL6NJ_G0032724.1 mouse_genomes_project 7 48264266 48269334 + MGP_C57BL6NJ_P0084411 Dbp protein_coding protein_coding MGP_C57BL6NJ_T0084412.1 MGP_C57BL6NJ_G0032724.1 mouse_genomes_project 7 48264802 48269293 + MGP_C57BL6NJ_P0084412 Dbp protein_coding protein_coding MGP_C57BL6NJ_T0084413.1 MGP_C57BL6NJ_G0032724.1 mouse_genomes_project 7 48264802 48269293 + MGP_C57BL6NJ_P0084413 Dbp protein_coding protein_coding MGP_C57BL6NJ_T0084414.1 MGP_C57BL6NJ_G0032724.1 mouse_genomes_project 7 48266282 48269207 + Dbp protein_coding retained_intron MGP_C57BL6NJ_T0084415.1 MGP_C57BL6NJ_G0032724.1 mouse_genomes_project 7 48267067 48269075 + Dbp protein_coding retained_intron MGP_C57BL6NJ_T0016368.1 MGP_C57BL6NJ_G0014413.1 mouse_genomes_project 7 134840110 134841444 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101872.1 MGP_C57BL6NJ_G0039918.1 mouse_genomes_project 7 63427378 63427448 - Snord107 snoRNA snoRNA MGP_C57BL6NJ_T0005419.1 MGP_C57BL6NJ_G0004599.1 mouse_genomes_project 7 103365130 103370174 - Gm15416 antisense antisense MGP_C57BL6NJ_T0086234.1 MGP_C57BL6NJ_G0033254.1 mouse_genomes_project 7 113369131 113374100 - MGP_C57BL6NJ_P0086234 Taf10 protein_coding protein_coding MGP_C57BL6NJ_T0086242.1 MGP_C57BL6NJ_G0033254.1 mouse_genomes_project 7 113372634 113373821 - Taf10 protein_coding retained_intron MGP_C57BL6NJ_T0086243.1 MGP_C57BL6NJ_G0033254.1 mouse_genomes_project 7 113372644 113373349 - Taf10 protein_coding retained_intron MGP_C57BL6NJ_T0086244.1 MGP_C57BL6NJ_G0033254.1 mouse_genomes_project 7 113372975 113374081 - Taf10 protein_coding retained_intron MGP_C57BL6NJ_T0082076.1 MGP_C57BL6NJ_G0032093.1 mouse_genomes_project 7 10675452 10687990 - MGP_C57BL6NJ_P0082076 Zscan18 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016110.1 MGP_C57BL6NJ_G0014155.1 mouse_genomes_project 7 461379 461680 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083141.1 MGP_C57BL6NJ_G0032402.1 mouse_genomes_project 7 28291501 28319432 - MGP_C57BL6NJ_P0083141 Acp7 protein_coding protein_coding MGP_C57BL6NJ_T0083142.1 MGP_C57BL6NJ_G0032402.1 mouse_genomes_project 7 28303437 28318872 - Acp7 protein_coding processed_transcript MGP_C57BL6NJ_T0083143.1 MGP_C57BL6NJ_G0032402.1 mouse_genomes_project 7 28303926 28318872 - Acp7 protein_coding processed_transcript MGP_C57BL6NJ_T0083144.1 MGP_C57BL6NJ_G0032402.1 mouse_genomes_project 7 28317855 28318865 - Acp7 protein_coding processed_transcript MGP_C57BL6NJ_T0083145.1 MGP_C57BL6NJ_G0032402.1 mouse_genomes_project 7 28317888 28319697 - Acp7 protein_coding processed_transcript MGP_C57BL6NJ_T0016326.1 MGP_C57BL6NJ_G0014371.1 mouse_genomes_project 7 102424183 102425251 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083426.1 MGP_C57BL6NJ_G0032467.1 mouse_genomes_project 7 30359574 30363785 + MGP_C57BL6NJ_P0083426 Tyrobp protein_coding protein_coding MGP_C57BL6NJ_T0084585.1 MGP_C57BL6NJ_G0032775.1 mouse_genomes_project 7 51354446 51374929 - MGP_C57BL6NJ_P0084585 Mrgprx2 protein_coding protein_coding MGP_C57BL6NJ_T0084586.1 MGP_C57BL6NJ_G0032775.1 mouse_genomes_project 7 51356453 51371733 - MGP_C57BL6NJ_P0084586 Mrgprx2 protein_coding protein_coding MGP_C57BL6NJ_T0009204.1 MGP_C57BL6NJ_G0007411.1 mouse_genomes_project 7 134652918 134655071 + 4930571K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0009205.1 MGP_C57BL6NJ_G0007411.1 mouse_genomes_project 7 134653069 134655065 + 4930571K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0002431.1 MGP_C57BL6NJ_G0002320.1 mouse_genomes_project 7 124961662 124962619 - TEC TEC MGP_C57BL6NJ_T0002425.1 MGP_C57BL6NJ_G0002314.1 mouse_genomes_project 7 85395937 85398222 + TEC TEC MGP_C57BL6NJ_T0084778.1 MGP_C57BL6NJ_G0032819.1 mouse_genomes_project 7 68228166 68243715 + Mtmr10 protein_coding retained_intron MGP_C57BL6NJ_T0084779.1 MGP_C57BL6NJ_G0032819.1 mouse_genomes_project 7 68228183 68301855 + MGP_C57BL6NJ_P0084779 Mtmr10 protein_coding protein_coding MGP_C57BL6NJ_T0084780.1 MGP_C57BL6NJ_G0032819.1 mouse_genomes_project 7 68228295 68299078 + MGP_C57BL6NJ_P0084780 Mtmr10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084781.1 MGP_C57BL6NJ_G0032819.1 mouse_genomes_project 7 68241175 68276371 + MGP_C57BL6NJ_P0084781 Mtmr10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082045.1 MGP_C57BL6NJ_G0032072.1 mouse_genomes_project 7 8270540 8272272 - MGP_C57BL6NJ_P0082045 Vmn1r69 protein_coding protein_coding MGP_C57BL6NJ_T0082046.1 MGP_C57BL6NJ_G0032072.1 mouse_genomes_project 7 8271473 8308363 - MGP_C57BL6NJ_P0082046 Vmn1r69 protein_coding protein_coding MGP_C57BL6NJ_T0082047.1 MGP_C57BL6NJ_G0032072.1 mouse_genomes_project 7 8271473 8308363 - MGP_C57BL6NJ_P0082047 Vmn1r69 protein_coding protein_coding MGP_C57BL6NJ_T0085265.1 MGP_C57BL6NJ_G0032904.1 mouse_genomes_project 7 86159850 86162328 - Nmb protein_coding retained_intron MGP_C57BL6NJ_T0085266.1 MGP_C57BL6NJ_G0032904.1 mouse_genomes_project 7 86159851 86163011 - MGP_C57BL6NJ_P0085266 Nmb protein_coding protein_coding MGP_C57BL6NJ_T0085267.1 MGP_C57BL6NJ_G0032904.1 mouse_genomes_project 7 86159857 86162309 - Nmb protein_coding retained_intron MGP_C57BL6NJ_T0085268.1 MGP_C57BL6NJ_G0032904.1 mouse_genomes_project 7 86159857 86162995 - MGP_C57BL6NJ_P0085268 Nmb protein_coding protein_coding MGP_C57BL6NJ_T0018791.1 MGP_C57BL6NJ_G0016046.1 mouse_genomes_project 7 3955546 3966149 - Gm44015 processed_transcript lincRNA MGP_C57BL6NJ_T0018792.1 MGP_C57BL6NJ_G0016046.1 mouse_genomes_project 7 3955584 3962151 - Gm44015 processed_transcript retained_intron MGP_C57BL6NJ_T0100631.1 MGP_C57BL6NJ_G0038677.1 mouse_genomes_project 7 151709457 151709553 - Gm22019 snRNA snRNA MGP_C57BL6NJ_T0011165.1 MGP_C57BL6NJ_G0009250.1 mouse_genomes_project 7 92084040 92084136 - Gm23192 miRNA miRNA MGP_C57BL6NJ_T0083757.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35690815 35848203 - MGP_C57BL6NJ_P0083757 Chst8 protein_coding protein_coding MGP_C57BL6NJ_T0083758.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35690815 35848203 - MGP_C57BL6NJ_P0083758 Chst8 protein_coding protein_coding MGP_C57BL6NJ_T0083759.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35691105 35848203 - MGP_C57BL6NJ_P0083759 Chst8 protein_coding protein_coding MGP_C57BL6NJ_T0083760.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35692165 35848228 - Chst8 protein_coding processed_transcript MGP_C57BL6NJ_T0083761.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35718099 35721278 - Chst8 protein_coding processed_transcript MGP_C57BL6NJ_T0083762.1 MGP_C57BL6NJ_G0032543.1 mouse_genomes_project 7 35718949 35848189 - Chst8 protein_coding processed_transcript MGP_C57BL6NJ_T0083618.1 MGP_C57BL6NJ_G0032507.1 mouse_genomes_project 7 31110597 31119500 - MGP_C57BL6NJ_P0083618 Fxyd7 protein_coding protein_coding MGP_C57BL6NJ_T0083619.1 MGP_C57BL6NJ_G0032507.1 mouse_genomes_project 7 31110597 31119564 - MGP_C57BL6NJ_P0083619 Fxyd7 protein_coding protein_coding MGP_C57BL6NJ_T0086803.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131028935 131065079 - MGP_C57BL6NJ_P0086803 Gga2 protein_coding protein_coding MGP_C57BL6NJ_T0086804.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131028935 131065024 - MGP_C57BL6NJ_P0086804 Gga2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086805.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131030978 131044691 - Gga2 protein_coding retained_intron MGP_C57BL6NJ_T0086806.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131038801 131041249 - Gga2 protein_coding retained_intron MGP_C57BL6NJ_T0086807.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131046946 131065037 - Gga2 protein_coding retained_intron MGP_C57BL6NJ_T0086808.1 MGP_C57BL6NJ_G0033441.1 mouse_genomes_project 7 131052622 131065044 - Gga2 protein_coding retained_intron MGP_C57BL6NJ_T0011136.1 MGP_C57BL6NJ_G0009221.1 mouse_genomes_project 7 65440184 65440264 - Gm23962 miRNA miRNA MGP_C57BL6NJ_T0084078.1 MGP_C57BL6NJ_G0032642.1 mouse_genomes_project 7 46769125 46787071 - MGP_C57BL6NJ_P0084078 1700008O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0084079.1 MGP_C57BL6NJ_G0032642.1 mouse_genomes_project 7 46769181 46786555 - 1700008O03Rik protein_coding retained_intron MGP_C57BL6NJ_T0084080.1 MGP_C57BL6NJ_G0032642.1 mouse_genomes_project 7 46769319 46785641 - MGP_C57BL6NJ_P0084080 1700008O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0084081.1 MGP_C57BL6NJ_G0032642.1 mouse_genomes_project 7 46773535 46799234 - 1700008O03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084082.1 MGP_C57BL6NJ_G0032642.1 mouse_genomes_project 7 46790927 46799370 - 1700008O03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0103548.1 MGP_C57BL6NJ_G0041340.1 mouse_genomes_project 7 114191790 114437177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009173.1 MGP_C57BL6NJ_G0007393.1 mouse_genomes_project 7 117045196 117057457 - Gm26599 lincRNA lincRNA MGP_C57BL6NJ_T0016141.1 MGP_C57BL6NJ_G0014186.1 mouse_genomes_project 7 11695042 11696617 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009092.1 MGP_C57BL6NJ_G0007338.1 mouse_genomes_project 7 75673304 75682710 + 6030442E23Rik lincRNA lincRNA MGP_C57BL6NJ_T0086595.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124884895 125002314 - MGP_C57BL6NJ_P0086595 Pik3c2a protein_coding protein_coding MGP_C57BL6NJ_T0086596.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124884906 124888260 - Pik3c2a protein_coding retained_intron MGP_C57BL6NJ_T0086597.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124887235 124919254 - MGP_C57BL6NJ_P0086597 Pik3c2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086598.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124887357 125002314 - MGP_C57BL6NJ_P0086598 Pik3c2a protein_coding protein_coding MGP_C57BL6NJ_T0086599.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124889536 124890277 - Pik3c2a protein_coding retained_intron MGP_C57BL6NJ_T0086600.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124940396 125002312 - MGP_C57BL6NJ_P0086600 Pik3c2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086601.1 MGP_C57BL6NJ_G0033385.1 mouse_genomes_project 7 124941391 125002304 - Pik3c2a protein_coding retained_intron MGP_C57BL6NJ_T0103460.1 MGP_C57BL6NJ_G0041252.1 mouse_genomes_project 7 50129215 50129670 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082403.1 MGP_C57BL6NJ_G0032199.1 mouse_genomes_project 7 17835023 17837757 + MGP_C57BL6NJ_P0082403 Irf2bp1 protein_coding protein_coding MGP_C57BL6NJ_T0011133.1 MGP_C57BL6NJ_G0009218.1 mouse_genomes_project 7 57520427 57520614 - Gm25956 miRNA miRNA MGP_C57BL6NJ_T0082544.1 MGP_C57BL6NJ_G0032237.1 mouse_genomes_project 7 18582803 18589030 - MGP_C57BL6NJ_P0082544 Apoc4 protein_coding protein_coding MGP_C57BL6NJ_T0084453.1 MGP_C57BL6NJ_G0032732.1 mouse_genomes_project 7 48397577 48411541 - MGP_C57BL6NJ_P0084453 protein_coding protein_coding MGP_C57BL6NJ_T0086071.1 MGP_C57BL6NJ_G0033182.1 mouse_genomes_project 7 111357066 111358005 + MGP_C57BL6NJ_P0086071 Olfr646 protein_coding protein_coding MGP_C57BL6NJ_T0082040.1 MGP_C57BL6NJ_G0032067.1 mouse_genomes_project 7 7822595 7844742 - MGP_C57BL6NJ_P0082040 protein_coding protein_coding MGP_C57BL6NJ_T0082608.1 MGP_C57BL6NJ_G0032260.1 mouse_genomes_project 7 22943854 22944824 + MGP_C57BL6NJ_P0082608 Vmn1r180 protein_coding protein_coding MGP_C57BL6NJ_T0100570.1 MGP_C57BL6NJ_G0038616.1 mouse_genomes_project 7 14654782 14654909 - Gm26473 snRNA snRNA MGP_C57BL6NJ_T0009172.1 MGP_C57BL6NJ_G0007392.1 mouse_genomes_project 7 115148054 115213157 + Platr28 lincRNA lincRNA MGP_C57BL6NJ_T0103550.1 MGP_C57BL6NJ_G0041342.1 mouse_genomes_project 7 114435908 114437177 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085796.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107694492 107712085 - MGP_C57BL6NJ_P0085796 Relt protein_coding protein_coding MGP_C57BL6NJ_T0085797.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107695174 107712045 - MGP_C57BL6NJ_P0085797 Relt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085798.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107699756 107704074 - MGP_C57BL6NJ_P0085798 Relt protein_coding protein_coding MGP_C57BL6NJ_T0085799.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107699756 107704947 - MGP_C57BL6NJ_P0085799 Relt protein_coding protein_coding MGP_C57BL6NJ_T0085800.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107699766 107711797 - MGP_C57BL6NJ_P0085800 Relt protein_coding protein_coding MGP_C57BL6NJ_T0085801.1 MGP_C57BL6NJ_G0033060.1 mouse_genomes_project 7 107701701 107712037 - MGP_C57BL6NJ_P0085801 Relt protein_coding protein_coding MGP_C57BL6NJ_T0009161.1 MGP_C57BL6NJ_G0007384.1 mouse_genomes_project 7 100731018 100733607 - Gm44601 lincRNA lincRNA MGP_C57BL6NJ_T0083042.1 MGP_C57BL6NJ_G0032369.1 mouse_genomes_project 7 27225337 27243593 - MGP_C57BL6NJ_P0083042 Map3k10 protein_coding protein_coding MGP_C57BL6NJ_T0083043.1 MGP_C57BL6NJ_G0032369.1 mouse_genomes_project 7 27225626 27243597 - MGP_C57BL6NJ_P0083043 Map3k10 protein_coding protein_coding MGP_C57BL6NJ_T0083044.1 MGP_C57BL6NJ_G0032369.1 mouse_genomes_project 7 27233156 27234106 - Map3k10 protein_coding retained_intron MGP_C57BL6NJ_T0083045.1 MGP_C57BL6NJ_G0032369.1 mouse_genomes_project 7 27233178 27243356 - Map3k10 protein_coding retained_intron MGP_C57BL6NJ_T0083046.1 MGP_C57BL6NJ_G0032369.1 mouse_genomes_project 7 27237146 27243580 - MGP_C57BL6NJ_P0083046 Map3k10 protein_coding protein_coding MGP_C57BL6NJ_T0085208.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585695 85595876 - MGP_C57BL6NJ_P0085208 Fes protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085209.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585697 85588376 - Fes protein_coding retained_intron MGP_C57BL6NJ_T0085210.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585697 85587570 - MGP_C57BL6NJ_P0085210 Fes protein_coding protein_coding MGP_C57BL6NJ_T0085211.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585697 85595886 - MGP_C57BL6NJ_P0085211 Fes protein_coding protein_coding MGP_C57BL6NJ_T0085212.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585702 85595811 - MGP_C57BL6NJ_P0085212 Fes protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085213.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585703 85595881 - MGP_C57BL6NJ_P0085213 Fes protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085214.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85585712 85595359 - MGP_C57BL6NJ_P0085214 Fes protein_coding protein_coding MGP_C57BL6NJ_T0085215.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85592149 85595835 - MGP_C57BL6NJ_P0085215 Fes protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085216.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85594852 85595821 - MGP_C57BL6NJ_P0085216 Fes protein_coding protein_coding MGP_C57BL6NJ_T0085217.1 MGP_C57BL6NJ_G0032897.1 mouse_genomes_project 7 85594978 85595834 - Fes protein_coding retained_intron MGP_C57BL6NJ_T0083584.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30913644 30951444 - MGP_C57BL6NJ_P0083584 Mag protein_coding protein_coding MGP_C57BL6NJ_T0083585.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30913651 30950902 - MGP_C57BL6NJ_P0083585 Mag protein_coding protein_coding MGP_C57BL6NJ_T0083586.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30913999 30950883 - MGP_C57BL6NJ_P0083586 Mag protein_coding protein_coding MGP_C57BL6NJ_T0083587.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30914054 30950883 - MGP_C57BL6NJ_P0083587 Mag protein_coding protein_coding MGP_C57BL6NJ_T0083588.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30923935 30951485 - Mag protein_coding retained_intron MGP_C57BL6NJ_T0083589.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30925599 30951477 - MGP_C57BL6NJ_P0083589 Mag protein_coding protein_coding MGP_C57BL6NJ_T0083590.1 MGP_C57BL6NJ_G0032500.1 mouse_genomes_project 7 30928093 30951436 - MGP_C57BL6NJ_P0083590 Mag protein_coding protein_coding MGP_C57BL6NJ_T0086005.1 MGP_C57BL6NJ_G0033118.1 mouse_genomes_project 7 109982327 109983284 + MGP_C57BL6NJ_P0086005 Olfr572 protein_coding protein_coding MGP_C57BL6NJ_T0087945.1 MGP_C57BL6NJ_G0033669.1 mouse_genomes_project 7 150774591 150775527 - MGP_C57BL6NJ_P0087945 Olfr60 protein_coding protein_coding MGP_C57BL6NJ_T0103424.1 MGP_C57BL6NJ_G0041216.1 mouse_genomes_project 7 40631931 40643645 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086571.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124652770 124771650 - MGP_C57BL6NJ_P0086571 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086572.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124652778 124852670 - MGP_C57BL6NJ_P0086572 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086573.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124653811 124771369 - MGP_C57BL6NJ_P0086573 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086574.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124655314 124719415 - MGP_C57BL6NJ_P0086574 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086575.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124663080 124719692 - MGP_C57BL6NJ_P0086575 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086576.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124664218 124852649 - MGP_C57BL6NJ_P0086576 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086577.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124672020 124687174 - MGP_C57BL6NJ_P0086577 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086578.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124685350 124771504 - Plekha7 protein_coding retained_intron MGP_C57BL6NJ_T0086579.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124693229 124694165 - Plekha7 protein_coding retained_intron MGP_C57BL6NJ_T0086580.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124694541 124714603 - Plekha7 protein_coding processed_transcript MGP_C57BL6NJ_T0086581.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124700783 124796795 - MGP_C57BL6NJ_P0086581 Plekha7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086582.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124700906 124717088 - Plekha7 protein_coding processed_transcript MGP_C57BL6NJ_T0086583.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124705812 124852535 - MGP_C57BL6NJ_P0086583 Plekha7 protein_coding protein_coding MGP_C57BL6NJ_T0086584.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124706986 124852344 - Plekha7 protein_coding retained_intron MGP_C57BL6NJ_T0086585.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124707032 124710764 - Plekha7 protein_coding retained_intron MGP_C57BL6NJ_T0086586.1 MGP_C57BL6NJ_G0033383.1 mouse_genomes_project 7 124711331 124802745 - Plekha7 protein_coding processed_transcript MGP_C57BL6NJ_T0002427.1 MGP_C57BL6NJ_G0002316.1 mouse_genomes_project 7 86857791 86860004 - TEC TEC MGP_C57BL6NJ_T0018894.1 MGP_C57BL6NJ_G0016091.1 mouse_genomes_project 7 144283627 144287632 - A130023I24Rik processed_transcript sense_intronic MGP_C57BL6NJ_T0018895.1 MGP_C57BL6NJ_G0016091.1 mouse_genomes_project 7 144283706 144286247 - A130023I24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0011120.1 MGP_C57BL6NJ_G0009205.1 mouse_genomes_project 7 45666674 45666747 + Mir7051 miRNA miRNA MGP_C57BL6NJ_T0103389.1 MGP_C57BL6NJ_G0041181.1 mouse_genomes_project 7 31329531 31329918 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084394.1 MGP_C57BL6NJ_G0032715.1 mouse_genomes_project 7 48168080 48169664 - MGP_C57BL6NJ_P0084394 Fgf21 protein_coding protein_coding MGP_C57BL6NJ_T0083204.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28649786 28727911 - MGP_C57BL6NJ_P0083204 Actn4 protein_coding protein_coding MGP_C57BL6NJ_T0083205.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28649787 28727754 - MGP_C57BL6NJ_P0083205 Actn4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083206.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28649787 28727754 - MGP_C57BL6NJ_P0083206 Actn4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083207.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28650191 28663924 - Actn4 protein_coding processed_transcript MGP_C57BL6NJ_T0083208.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28650770 28651391 - Actn4 protein_coding retained_intron MGP_C57BL6NJ_T0083209.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28652180 28653570 - Actn4 protein_coding retained_intron MGP_C57BL6NJ_T0083210.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28655158 28727794 - MGP_C57BL6NJ_P0083210 Actn4 protein_coding protein_coding MGP_C57BL6NJ_T0083211.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28658453 28664225 - Actn4 protein_coding processed_transcript MGP_C57BL6NJ_T0083212.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28663552 28675760 - MGP_C57BL6NJ_P0083212 Actn4 protein_coding protein_coding MGP_C57BL6NJ_T0083213.1 MGP_C57BL6NJ_G0032416.1 mouse_genomes_project 7 28669916 28715323 - MGP_C57BL6NJ_P0083213 Actn4 protein_coding protein_coding MGP_C57BL6NJ_T0101893.1 MGP_C57BL6NJ_G0039939.1 mouse_genomes_project 7 119322088 119322256 - Gm23262 snoRNA snoRNA MGP_C57BL6NJ_T0086609.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126780817 126793460 - MGP_C57BL6NJ_P0086609 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0086610.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126780823 126792528 - MGP_C57BL6NJ_P0086610 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0086611.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126785509 126792949 - MGP_C57BL6NJ_P0086611 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0086612.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126785614 126792826 - MGP_C57BL6NJ_P0086612 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0086613.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126786108 126792500 - Rps15a protein_coding retained_intron MGP_C57BL6NJ_T0086614.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126786443 126793401 - MGP_C57BL6NJ_P0086614 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0086615.1 MGP_C57BL6NJ_G0033388.1 mouse_genomes_project 7 126792056 126793400 - MGP_C57BL6NJ_P0086615 Rps15a protein_coding protein_coding MGP_C57BL6NJ_T0084419.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48274635 48281601 + MGP_C57BL6NJ_P0084419 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084420.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48277253 48281602 + MGP_C57BL6NJ_P0084420 Rpl18 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084421.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48277257 48281602 + MGP_C57BL6NJ_P0084421 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084422.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48277343 48281595 + MGP_C57BL6NJ_P0084422 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084423.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48278338 48280133 + Rpl18 protein_coding retained_intron MGP_C57BL6NJ_T0084424.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48278395 48280365 + MGP_C57BL6NJ_P0084424 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084425.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48278448 48281552 + Rpl18 protein_coding retained_intron MGP_C57BL6NJ_T0084426.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48279603 48281594 + MGP_C57BL6NJ_P0084426 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084427.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48279628 48281597 + MGP_C57BL6NJ_P0084427 Rpl18 protein_coding protein_coding MGP_C57BL6NJ_T0084428.1 MGP_C57BL6NJ_G0032726.1 mouse_genomes_project 7 48280162 48281597 + Rpl18 protein_coding retained_intron MGP_C57BL6NJ_T0088433.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155206061 155243315 - MGP_C57BL6NJ_P0088433 Cttn protein_coding protein_coding MGP_C57BL6NJ_T0088434.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155206063 155243579 - MGP_C57BL6NJ_P0088434 Cttn protein_coding protein_coding MGP_C57BL6NJ_T0088435.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155207744 155209189 - Cttn protein_coding retained_intron MGP_C57BL6NJ_T0088436.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155209646 155222324 - Cttn protein_coding retained_intron MGP_C57BL6NJ_T0088437.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155210875 155218455 - Cttn protein_coding processed_transcript MGP_C57BL6NJ_T0088438.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155218352 155225167 - Cttn protein_coding processed_transcript MGP_C57BL6NJ_T0088439.1 MGP_C57BL6NJ_G0033780.1 mouse_genomes_project 7 155229043 155233353 - Cttn protein_coding processed_transcript MGP_C57BL6NJ_T0100605.1 MGP_C57BL6NJ_G0038651.1 mouse_genomes_project 7 105157412 105157575 + Gm23040 snRNA snRNA MGP_C57BL6NJ_T0002351.1 MGP_C57BL6NJ_G0002241.1 mouse_genomes_project 7 38000072 38004080 + TEC TEC MGP_C57BL6NJ_T0087043.1 MGP_C57BL6NJ_G0033481.1 mouse_genomes_project 7 135958309 135962480 + MGP_C57BL6NJ_P0087043 Apobr protein_coding protein_coding MGP_C57BL6NJ_T0087044.1 MGP_C57BL6NJ_G0033481.1 mouse_genomes_project 7 135958358 135961319 + MGP_C57BL6NJ_P0087044 Apobr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087045.1 MGP_C57BL6NJ_G0033481.1 mouse_genomes_project 7 135958359 135961738 + MGP_C57BL6NJ_P0087045 Apobr protein_coding protein_coding MGP_C57BL6NJ_T0087046.1 MGP_C57BL6NJ_G0033481.1 mouse_genomes_project 7 135960447 135961813 + MGP_C57BL6NJ_P0087046 Apobr protein_coding protein_coding MGP_C57BL6NJ_T0087047.1 MGP_C57BL6NJ_G0033481.1 mouse_genomes_project 7 135961041 135961693 + MGP_C57BL6NJ_P0087047 Apobr protein_coding protein_coding MGP_C57BL6NJ_T0087701.1 MGP_C57BL6NJ_G0033606.1 mouse_genomes_project 7 142487581 142507930 - MGP_C57BL6NJ_P0087701 Oat protein_coding protein_coding MGP_C57BL6NJ_T0083146.1 MGP_C57BL6NJ_G0032403.1 mouse_genomes_project 7 28398210 28404700 + MGP_C57BL6NJ_P0083146 protein_coding protein_coding MGP_C57BL6NJ_T0083147.1 MGP_C57BL6NJ_G0032403.1 mouse_genomes_project 7 28398400 28398876 + MGP_C57BL6NJ_P0083147 protein_coding protein_coding MGP_C57BL6NJ_T0083148.1 MGP_C57BL6NJ_G0032403.1 mouse_genomes_project 7 28398505 28404697 + MGP_C57BL6NJ_P0083148 protein_coding protein_coding MGP_C57BL6NJ_T0083149.1 MGP_C57BL6NJ_G0032403.1 mouse_genomes_project 7 28402012 28403323 + protein_coding processed_transcript MGP_C57BL6NJ_T0005407.1 MGP_C57BL6NJ_G0004591.1 mouse_genomes_project 7 88166566 88179558 - 4933406J10Rik antisense antisense MGP_C57BL6NJ_T0011102.1 MGP_C57BL6NJ_G0009187.1 mouse_genomes_project 7 24453286 24453344 - Mir7048 miRNA miRNA MGP_C57BL6NJ_T0083663.1 MGP_C57BL6NJ_G0032512.1 mouse_genomes_project 7 31186796 31197533 - MGP_C57BL6NJ_P0083663 Scn1b protein_coding protein_coding MGP_C57BL6NJ_T0009242.1 MGP_C57BL6NJ_G0007436.1 mouse_genomes_project 7 144498415 144575346 - Gm4593 lincRNA lincRNA MGP_C57BL6NJ_T0009243.1 MGP_C57BL6NJ_G0007436.1 mouse_genomes_project 7 144574552 144577526 - Gm4593 lincRNA lincRNA MGP_C57BL6NJ_T0016223.1 MGP_C57BL6NJ_G0014268.1 mouse_genomes_project 7 35495926 35496571 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016195.1 MGP_C57BL6NJ_G0014240.1 mouse_genomes_project 7 31595300 31595418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002350.1 MGP_C57BL6NJ_G0002240.1 mouse_genomes_project 7 37988476 37989636 + TEC TEC MGP_C57BL6NJ_T0082786.1 MGP_C57BL6NJ_G0032306.1 mouse_genomes_project 7 24478182 24487962 - MGP_C57BL6NJ_P0082786 Erf protein_coding protein_coding MGP_C57BL6NJ_T0082787.1 MGP_C57BL6NJ_G0032306.1 mouse_genomes_project 7 24482621 24487931 - MGP_C57BL6NJ_P0082787 Erf protein_coding protein_coding MGP_C57BL6NJ_T0009098.1 MGP_C57BL6NJ_G0007344.1 mouse_genomes_project 7 77243779 77244084 - Gm28745 lincRNA lincRNA MGP_C57BL6NJ_T0005365.1 MGP_C57BL6NJ_G0004562.1 mouse_genomes_project 7 39555221 39555437 - D530033B14Rik antisense antisense MGP_C57BL6NJ_T0005366.1 MGP_C57BL6NJ_G0004562.1 mouse_genomes_project 7 39555417 39569129 - D530033B14Rik antisense antisense MGP_C57BL6NJ_T0081947.1 MGP_C57BL6NJ_G0032017.1 mouse_genomes_project 7 2036767 2046235 - MGP_C57BL6NJ_P0081947 Fiz1 protein_coding protein_coding MGP_C57BL6NJ_T0081948.1 MGP_C57BL6NJ_G0032017.1 mouse_genomes_project 7 2036767 2042953 - MGP_C57BL6NJ_P0081948 Fiz1 protein_coding protein_coding MGP_C57BL6NJ_T0081949.1 MGP_C57BL6NJ_G0032017.1 mouse_genomes_project 7 2036767 2046679 - MGP_C57BL6NJ_P0081949 Fiz1 protein_coding protein_coding MGP_C57BL6NJ_T0082372.1 MGP_C57BL6NJ_G0032185.1 mouse_genomes_project 7 17253611 17276258 - MGP_C57BL6NJ_P0082372 Psg25 protein_coding protein_coding MGP_C57BL6NJ_T0083164.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28505873 28529386 + Sirt2 protein_coding processed_transcript MGP_C57BL6NJ_T0083165.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28505890 28529391 + MGP_C57BL6NJ_P0083165 Sirt2 protein_coding protein_coding MGP_C57BL6NJ_T0083166.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28505905 28529386 + MGP_C57BL6NJ_P0083166 Sirt2 protein_coding protein_coding MGP_C57BL6NJ_T0083167.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28506392 28529386 + Sirt2 protein_coding processed_transcript MGP_C57BL6NJ_T0083168.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28515970 28516801 + Sirt2 protein_coding retained_intron MGP_C57BL6NJ_T0083169.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28516120 28524065 + Sirt2 protein_coding retained_intron MGP_C57BL6NJ_T0083170.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28525351 28528493 + Sirt2 protein_coding processed_transcript MGP_C57BL6NJ_T0083171.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28526108 28528352 + Sirt2 protein_coding retained_intron MGP_C57BL6NJ_T0083172.1 MGP_C57BL6NJ_G0032409.1 mouse_genomes_project 7 28526282 28528986 + Sirt2 protein_coding retained_intron MGP_C57BL6NJ_T0005327.1 MGP_C57BL6NJ_G0004534.1 mouse_genomes_project 7 24464355 24465926 + 9130221H12Rik antisense antisense MGP_C57BL6NJ_T0005328.1 MGP_C57BL6NJ_G0004534.1 mouse_genomes_project 7 24464391 24465932 + 9130221H12Rik antisense antisense MGP_C57BL6NJ_T0083101.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28014016 28026648 - MGP_C57BL6NJ_P0083101 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083102.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28014017 28026992 - Plekhg2 protein_coding retained_intron MGP_C57BL6NJ_T0083103.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28014017 28017756 - Plekhg2 protein_coding retained_intron MGP_C57BL6NJ_T0083104.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28014017 28025989 - MGP_C57BL6NJ_P0083104 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083105.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28014017 28026909 - MGP_C57BL6NJ_P0083105 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083106.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28015504 28027014 - MGP_C57BL6NJ_P0083106 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083107.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28018418 28019907 - Plekhg2 protein_coding retained_intron MGP_C57BL6NJ_T0083108.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28022824 28026142 - MGP_C57BL6NJ_P0083108 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083109.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28024495 28026495 - MGP_C57BL6NJ_P0083109 Plekhg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083110.1 MGP_C57BL6NJ_G0032391.1 mouse_genomes_project 7 28024830 28025923 - MGP_C57BL6NJ_P0083110 Plekhg2 protein_coding protein_coding MGP_C57BL6NJ_T0083159.1 MGP_C57BL6NJ_G0032406.1 mouse_genomes_project 7 28474551 28491402 + MGP_C57BL6NJ_P0083159 Sars2 protein_coding protein_coding MGP_C57BL6NJ_T0085804.1 MGP_C57BL6NJ_G0033062.1 mouse_genomes_project 7 107795821 107827014 - MGP_C57BL6NJ_P0085804 P2ry6 protein_coding protein_coding MGP_C57BL6NJ_T0018803.1 MGP_C57BL6NJ_G0016054.1 mouse_genomes_project 7 30614917 30640754 - Gm21982 processed_transcript retained_intron MGP_C57BL6NJ_T0085157.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85483040 85512005 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085172.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85505373 85516332 - MGP_C57BL6NJ_P0085172 Rccd1 protein_coding protein_coding MGP_C57BL6NJ_T0085173.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85506379 85516352 - MGP_C57BL6NJ_P0085173 Rccd1 protein_coding protein_coding MGP_C57BL6NJ_T0085174.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85507253 85516033 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085175.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85507355 85516362 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085176.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85507357 85511111 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085177.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85512822 85516028 - MGP_C57BL6NJ_P0085177 Rccd1 protein_coding protein_coding MGP_C57BL6NJ_T0085178.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85513134 85516061 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085179.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85514526 85516042 - Rccd1 protein_coding retained_intron MGP_C57BL6NJ_T0085180.1 MGP_C57BL6NJ_G0032892.1 mouse_genomes_project 7 85515677 85516309 - Rccd1 protein_coding processed_transcript MGP_C57BL6NJ_T0083458.1 MGP_C57BL6NJ_G0032477.1 mouse_genomes_project 7 30518325 30528904 - MGP_C57BL6NJ_P0083458 Lin37 protein_coding protein_coding MGP_C57BL6NJ_T0083459.1 MGP_C57BL6NJ_G0032477.1 mouse_genomes_project 7 30518328 30518906 - Lin37 protein_coding retained_intron MGP_C57BL6NJ_T0083460.1 MGP_C57BL6NJ_G0032477.1 mouse_genomes_project 7 30518329 30529096 - MGP_C57BL6NJ_P0083460 Lin37 protein_coding protein_coding MGP_C57BL6NJ_T0083462.1 MGP_C57BL6NJ_G0032477.1 mouse_genomes_project 7 30518744 30528917 - MGP_C57BL6NJ_P0083462 Lin37 protein_coding protein_coding MGP_C57BL6NJ_T0083503.1 MGP_C57BL6NJ_G0032477.1 mouse_genomes_project 7 30526350 30528897 - Lin37 protein_coding processed_transcript MGP_C57BL6NJ_T0087802.1 MGP_C57BL6NJ_G0033625.1 mouse_genomes_project 7 145414145 145418449 + MGP_C57BL6NJ_P0087802 Nps protein_coding protein_coding MGP_C57BL6NJ_T0102558.1 MGP_C57BL6NJ_G0040396.1 mouse_genomes_project 7 34435095 34436278 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102559.1 MGP_C57BL6NJ_G0040396.1 mouse_genomes_project 7 34435097 34435484 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0085628.1 MGP_C57BL6NJ_G0033018.1 mouse_genomes_project 7 104785020 104787164 - MGP_C57BL6NJ_P0085628 Omp protein_coding protein_coding MGP_C57BL6NJ_T0084928.1 MGP_C57BL6NJ_G0032848.1 mouse_genomes_project 7 74757476 74765858 - MGP_C57BL6NJ_P0084928 Nr2f2 protein_coding protein_coding MGP_C57BL6NJ_T0084929.1 MGP_C57BL6NJ_G0032848.1 mouse_genomes_project 7 74759949 74773358 - MGP_C57BL6NJ_P0084929 Nr2f2 protein_coding protein_coding MGP_C57BL6NJ_T0084833.1 MGP_C57BL6NJ_G0032830.1 mouse_genomes_project 7 70162921 70182761 + MGP_C57BL6NJ_P0084833 Gm45213 protein_coding protein_coding MGP_C57BL6NJ_T0016144.1 MGP_C57BL6NJ_G0014189.1 mouse_genomes_project 7 12033886 12037952 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088342.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153649770 153664175 + MGP_C57BL6NJ_P0088342 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088343.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153649784 153652205 + Tspan32 protein_coding retained_intron MGP_C57BL6NJ_T0088344.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650362 153664333 + MGP_C57BL6NJ_P0088344 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088345.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650387 153664172 + MGP_C57BL6NJ_P0088345 Tspan32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088346.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650395 153664175 + MGP_C57BL6NJ_P0088346 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088347.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650409 153664175 + MGP_C57BL6NJ_P0088347 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088348.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650423 153664175 + MGP_C57BL6NJ_P0088348 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088349.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650423 153664175 + MGP_C57BL6NJ_P0088349 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088350.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153650652 153662362 + MGP_C57BL6NJ_P0088350 Tspan32 protein_coding protein_coding MGP_C57BL6NJ_T0088351.1 MGP_C57BL6NJ_G0033760.1 mouse_genomes_project 7 153662097 153663592 + Tspan32 protein_coding retained_intron MGP_C57BL6NJ_T0002439.1 MGP_C57BL6NJ_G0002328.1 mouse_genomes_project 7 131431097 131434283 + TEC TEC MGP_C57BL6NJ_T0086666.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127600810 127614586 - MGP_C57BL6NJ_P0086666 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086667.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127600810 127614586 - MGP_C57BL6NJ_P0086667 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086668.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127600825 127614589 - MGP_C57BL6NJ_P0086668 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086669.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127602378 127614272 - MGP_C57BL6NJ_P0086669 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086670.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127604089 127614190 - MGP_C57BL6NJ_P0086670 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086671.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127604343 127614842 - MGP_C57BL6NJ_P0086671 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0086672.1 MGP_C57BL6NJ_G0033399.1 mouse_genomes_project 7 127611351 127612878 - MGP_C57BL6NJ_P0086672 Knop1 protein_coding protein_coding MGP_C57BL6NJ_T0101889.1 MGP_C57BL6NJ_G0039935.1 mouse_genomes_project 7 117633581 117633713 + Snora3 snoRNA snoRNA MGP_C57BL6NJ_T0086417.1 MGP_C57BL6NJ_G0033352.1 mouse_genomes_project 7 118849570 118851730 + MGP_C57BL6NJ_P0086417 Adm protein_coding protein_coding MGP_C57BL6NJ_T0086418.1 MGP_C57BL6NJ_G0033352.1 mouse_genomes_project 7 118849578 118851729 + MGP_C57BL6NJ_P0086418 Adm protein_coding protein_coding MGP_C57BL6NJ_T0086419.1 MGP_C57BL6NJ_G0033352.1 mouse_genomes_project 7 118849937 118850461 + Adm protein_coding retained_intron MGP_C57BL6NJ_T0082782.1 MGP_C57BL6NJ_G0032304.1 mouse_genomes_project 7 24457039 24463176 + MGP_C57BL6NJ_P0082782 Zfp526 protein_coding protein_coding MGP_C57BL6NJ_T0005458.1 MGP_C57BL6NJ_G0004626.1 mouse_genomes_project 7 137548934 137552196 - Gm15533 antisense antisense MGP_C57BL6NJ_T0005459.1 MGP_C57BL6NJ_G0004626.1 mouse_genomes_project 7 137549884 137552226 - Gm15533 antisense antisense MGP_C57BL6NJ_T0002334.1 MGP_C57BL6NJ_G0002224.1 mouse_genomes_project 7 244880 245215 + TEC TEC MGP_C57BL6NJ_T0101859.1 MGP_C57BL6NJ_G0039905.1 mouse_genomes_project 7 47908824 47908978 + Gm22478 snoRNA snoRNA MGP_C57BL6NJ_T0103469.1 MGP_C57BL6NJ_G0041261.1 mouse_genomes_project 7 50543932 50544871 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084524.1 MGP_C57BL6NJ_G0032751.1 mouse_genomes_project 7 49373854 49377533 - MGP_C57BL6NJ_P0084524 Saa3 protein_coding protein_coding MGP_C57BL6NJ_T0011161.1 MGP_C57BL6NJ_G0009246.1 mouse_genomes_project 7 83899141 83899238 + Mir7-2 miRNA miRNA MGP_C57BL6NJ_T0100608.1 MGP_C57BL6NJ_G0038654.1 mouse_genomes_project 7 117180469 117180576 - Gm25450 snRNA snRNA MGP_C57BL6NJ_T0086515.1 MGP_C57BL6NJ_G0033371.1 mouse_genomes_project 7 122090927 122091413 - MGP_C57BL6NJ_P0086515 protein_coding protein_coding MGP_C57BL6NJ_T0081955.1 MGP_C57BL6NJ_G0032023.1 mouse_genomes_project 7 2087427 2089618 + MGP_C57BL6NJ_P0081955 Zfp580 protein_coding protein_coding MGP_C57BL6NJ_T0016385.1 MGP_C57BL6NJ_G0014430.1 mouse_genomes_project 7 138313694 138314144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081968.1 MGP_C57BL6NJ_G0032029.1 mouse_genomes_project 7 2178843 2179856 - MGP_C57BL6NJ_P0081968 Rasl2-9 protein_coding protein_coding MGP_C57BL6NJ_T0103330.1 MGP_C57BL6NJ_G0041123.1 mouse_genomes_project 7 9678898 9679076 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084000.1 MGP_C57BL6NJ_G0032606.1 mouse_genomes_project 7 45802388 45817353 + MGP_C57BL6NJ_P0084000 Zfp719 protein_coding protein_coding MGP_C57BL6NJ_T0084001.1 MGP_C57BL6NJ_G0032606.1 mouse_genomes_project 7 45802397 45813693 + MGP_C57BL6NJ_P0084001 Zfp719 protein_coding protein_coding MGP_C57BL6NJ_T0084002.1 MGP_C57BL6NJ_G0032606.1 mouse_genomes_project 7 45802417 45808626 + Zfp719 protein_coding retained_intron MGP_C57BL6NJ_T0101856.1 MGP_C57BL6NJ_G0039902.1 mouse_genomes_project 7 47631496 47631566 - Snord34 snoRNA snoRNA MGP_C57BL6NJ_T0011135.1 MGP_C57BL6NJ_G0009220.1 mouse_genomes_project 7 65432498 65432577 - Gm25533 miRNA miRNA MGP_C57BL6NJ_T0083203.1 MGP_C57BL6NJ_G0032415.1 mouse_genomes_project 7 28638557 28650124 + MGP_C57BL6NJ_P0083203 Capn12 protein_coding protein_coding MGP_C57BL6NJ_T0087065.1 MGP_C57BL6NJ_G0033485.1 mouse_genomes_project 7 136058657 136068193 - MGP_C57BL6NJ_P0087065 Sult1a1 protein_coding protein_coding MGP_C57BL6NJ_T0087066.1 MGP_C57BL6NJ_G0033485.1 mouse_genomes_project 7 136058658 136068193 - MGP_C57BL6NJ_P0087066 Sult1a1 protein_coding protein_coding MGP_C57BL6NJ_T0087067.1 MGP_C57BL6NJ_G0033485.1 mouse_genomes_project 7 136058675 136068154 - MGP_C57BL6NJ_P0087067 Sult1a1 protein_coding protein_coding MGP_C57BL6NJ_T0087068.1 MGP_C57BL6NJ_G0033485.1 mouse_genomes_project 7 136066103 136068211 - MGP_C57BL6NJ_P0087068 Sult1a1 protein_coding protein_coding MGP_C57BL6NJ_T0088016.1 MGP_C57BL6NJ_G0033700.1 mouse_genomes_project 7 151513742 151514823 - MGP_C57BL6NJ_P0088016 Ifitm6 protein_coding protein_coding MGP_C57BL6NJ_T0005478.1 MGP_C57BL6NJ_G0004640.1 mouse_genomes_project 7 153865225 153958929 - Kcnq1ot1 antisense antisense MGP_C57BL6NJ_T0083952.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547407 45555480 + Siglecf protein_coding retained_intron MGP_C57BL6NJ_T0083953.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547407 45555482 + MGP_C57BL6NJ_P0083953 Siglecf protein_coding protein_coding MGP_C57BL6NJ_T0083954.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547449 45547910 + Siglecf protein_coding processed_transcript MGP_C57BL6NJ_T0083955.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547474 45555543 + MGP_C57BL6NJ_P0083955 Siglecf protein_coding protein_coding MGP_C57BL6NJ_T0083956.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547588 45555301 + MGP_C57BL6NJ_P0083956 Siglecf protein_coding protein_coding MGP_C57BL6NJ_T0083957.1 MGP_C57BL6NJ_G0032592.1 mouse_genomes_project 7 45547614 45552630 + MGP_C57BL6NJ_P0083957 Siglecf protein_coding protein_coding MGP_C57BL6NJ_T0011141.1 MGP_C57BL6NJ_G0009226.1 mouse_genomes_project 7 65486666 65486746 - Mir344d-3 miRNA miRNA MGP_C57BL6NJ_T0082193.1 MGP_C57BL6NJ_G0032131.1 mouse_genomes_project 7 12865091 12876040 + MGP_C57BL6NJ_P0082193 Obox7 protein_coding protein_coding MGP_C57BL6NJ_T0082194.1 MGP_C57BL6NJ_G0032131.1 mouse_genomes_project 7 12865328 12876040 + MGP_C57BL6NJ_P0082194 Obox7 protein_coding protein_coding MGP_C57BL6NJ_T0082195.1 MGP_C57BL6NJ_G0032131.1 mouse_genomes_project 7 12865340 12874618 + MGP_C57BL6NJ_P0082195 Obox7 protein_coding protein_coding MGP_C57BL6NJ_T0082922.1 MGP_C57BL6NJ_G0032343.1 mouse_genomes_project 7 26517821 26518181 + MGP_C57BL6NJ_P0082922 protein_coding protein_coding MGP_C57BL6NJ_T0009026.1 MGP_C57BL6NJ_G0007293.1 mouse_genomes_project 7 38440521 38441692 + Gm28075 lincRNA lincRNA MGP_C57BL6NJ_T0087961.1 MGP_C57BL6NJ_G0033685.1 mouse_genomes_project 7 151278686 151294213 - MGP_C57BL6NJ_P0087961 Zfp941 protein_coding protein_coding MGP_C57BL6NJ_T0087962.1 MGP_C57BL6NJ_G0033685.1 mouse_genomes_project 7 151280926 151294167 - MGP_C57BL6NJ_P0087962 Zfp941 protein_coding protein_coding MGP_C57BL6NJ_T0087963.1 MGP_C57BL6NJ_G0033685.1 mouse_genomes_project 7 151289701 151294181 - Zfp941 protein_coding processed_transcript MGP_C57BL6NJ_T0082109.1 MGP_C57BL6NJ_G0032102.1 mouse_genomes_project 7 10923539 10924308 - Slc27a5 protein_coding processed_transcript MGP_C57BL6NJ_T0082110.1 MGP_C57BL6NJ_G0032102.1 mouse_genomes_project 7 10923539 10933270 - MGP_C57BL6NJ_P0082110 Slc27a5 protein_coding protein_coding MGP_C57BL6NJ_T0082111.1 MGP_C57BL6NJ_G0032102.1 mouse_genomes_project 7 10923545 10933312 - MGP_C57BL6NJ_P0082111 Slc27a5 protein_coding protein_coding MGP_C57BL6NJ_T0082112.1 MGP_C57BL6NJ_G0032102.1 mouse_genomes_project 7 10928468 10931700 - Slc27a5 protein_coding retained_intron MGP_C57BL6NJ_T0082113.1 MGP_C57BL6NJ_G0032102.1 mouse_genomes_project 7 10928468 10932797 - MGP_C57BL6NJ_P0082113 Slc27a5 protein_coding protein_coding MGP_C57BL6NJ_T0086257.1 MGP_C57BL6NJ_G0033260.1 mouse_genomes_project 7 114516486 114517438 - MGP_C57BL6NJ_P0086257 Olfr693 protein_coding protein_coding MGP_C57BL6NJ_T0084488.1 MGP_C57BL6NJ_G0032742.1 mouse_genomes_project 7 48723961 48725134 - MGP_C57BL6NJ_P0084488 Kcnj11 protein_coding protein_coding MGP_C57BL6NJ_T0016281.1 MGP_C57BL6NJ_G0014326.1 mouse_genomes_project 7 60459646 60461046 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011122.1 MGP_C57BL6NJ_G0009207.1 mouse_genomes_project 7 46972514 46972587 - Mir7053 miRNA miRNA MGP_C57BL6NJ_T0005315.1 MGP_C57BL6NJ_G0004524.1 mouse_genomes_project 7 17819783 17828648 - Mypopos antisense antisense MGP_C57BL6NJ_T0005316.1 MGP_C57BL6NJ_G0004524.1 mouse_genomes_project 7 17820102 17828675 - Mypopos antisense antisense MGP_C57BL6NJ_T0005317.1 MGP_C57BL6NJ_G0004524.1 mouse_genomes_project 7 17821292 17823606 - Mypopos antisense antisense MGP_C57BL6NJ_T0002435.1 MGP_C57BL6NJ_G0002324.1 mouse_genomes_project 7 130854835 130856449 - TEC TEC MGP_C57BL6NJ_T0009031.1 MGP_C57BL6NJ_G0007298.1 mouse_genomes_project 7 41099194 41108913 + Gm37494 lincRNA lincRNA MGP_C57BL6NJ_T0009032.1 MGP_C57BL6NJ_G0007298.1 mouse_genomes_project 7 41108080 41109331 + Gm37494 lincRNA lincRNA MGP_C57BL6NJ_T0009033.1 MGP_C57BL6NJ_G0007298.1 mouse_genomes_project 7 41108081 41136078 + Gm37494 lincRNA lincRNA MGP_C57BL6NJ_T0009034.1 MGP_C57BL6NJ_G0007298.1 mouse_genomes_project 7 41108105 41120699 + Gm37494 lincRNA lincRNA MGP_C57BL6NJ_T0002367.1 MGP_C57BL6NJ_G0002257.1 mouse_genomes_project 7 46799949 46802704 + TEC TEC MGP_C57BL6NJ_T0081952.1 MGP_C57BL6NJ_G0032020.1 mouse_genomes_project 7 2063543 2067297 + MGP_C57BL6NJ_P0081952 protein_coding protein_coding MGP_C57BL6NJ_T0016263.1 MGP_C57BL6NJ_G0014308.1 mouse_genomes_project 7 46683863 46684812 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103368.1 MGP_C57BL6NJ_G0041161.1 mouse_genomes_project 7 12902032 12902400 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0103479.1 MGP_C57BL6NJ_G0041271.1 mouse_genomes_project 7 50973362 50974245 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084566.1 MGP_C57BL6NJ_G0032762.1 mouse_genomes_project 7 49783751 49843154 - MGP_C57BL6NJ_P0084566 Ptpn5 protein_coding protein_coding MGP_C57BL6NJ_T0084567.1 MGP_C57BL6NJ_G0032762.1 mouse_genomes_project 7 49783755 49842148 - MGP_C57BL6NJ_P0084567 Ptpn5 protein_coding protein_coding MGP_C57BL6NJ_T0101886.1 MGP_C57BL6NJ_G0039932.1 mouse_genomes_project 7 109764449 109764582 - Gm24210 snoRNA snoRNA MGP_C57BL6NJ_T0103339.1 MGP_C57BL6NJ_G0041132.1 mouse_genomes_project 7 10060542 10061531 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082140.1 MGP_C57BL6NJ_G0032110.1 mouse_genomes_project 7 11095382 11096270 - MGP_C57BL6NJ_P0082140 Vmn1r87 protein_coding protein_coding MGP_C57BL6NJ_T0016163.1 MGP_C57BL6NJ_G0014208.1 mouse_genomes_project 7 17639549 17640119 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085411.1 MGP_C57BL6NJ_G0032955.1 mouse_genomes_project 7 92091592 92099357 - MGP_C57BL6NJ_P0085411 Olfr309 protein_coding protein_coding MGP_C57BL6NJ_T0085412.1 MGP_C57BL6NJ_G0032955.1 mouse_genomes_project 7 92091592 92092519 - MGP_C57BL6NJ_P0085412 Olfr309 protein_coding protein_coding MGP_C57BL6NJ_T0082816.1 MGP_C57BL6NJ_G0032312.1 mouse_genomes_project 7 24633314 24635398 - MGP_C57BL6NJ_P0082816 Cnfn protein_coding protein_coding MGP_C57BL6NJ_T0082817.1 MGP_C57BL6NJ_G0032312.1 mouse_genomes_project 7 24633316 24635419 - MGP_C57BL6NJ_P0082817 Cnfn protein_coding protein_coding MGP_C57BL6NJ_T0083741.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35328037 35377572 - MGP_C57BL6NJ_P0083741 Lsm14a protein_coding protein_coding MGP_C57BL6NJ_T0083742.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35328054 35336887 - MGP_C57BL6NJ_P0083742 Lsm14a protein_coding protein_coding MGP_C57BL6NJ_T0083743.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35329106 35381200 - MGP_C57BL6NJ_P0083743 Lsm14a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083744.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35329329 35359048 - MGP_C57BL6NJ_P0083744 Lsm14a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083745.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35334187 35336948 - Lsm14a protein_coding retained_intron MGP_C57BL6NJ_T0083746.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35336874 35377392 - MGP_C57BL6NJ_P0083746 Lsm14a protein_coding protein_coding MGP_C57BL6NJ_T0083747.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35337205 35377106 - MGP_C57BL6NJ_P0083747 Lsm14a protein_coding protein_coding MGP_C57BL6NJ_T0083748.1 MGP_C57BL6NJ_G0032541.1 mouse_genomes_project 7 35374607 35377187 - Lsm14a protein_coding retained_intron MGP_C57BL6NJ_T0087178.1 MGP_C57BL6NJ_G0033500.1 mouse_genomes_project 7 136272527 136291530 - MGP_C57BL6NJ_P0087178 Taok2 protein_coding protein_coding MGP_C57BL6NJ_T0087179.1 MGP_C57BL6NJ_G0033500.1 mouse_genomes_project 7 136273350 136274100 - Taok2 protein_coding retained_intron MGP_C57BL6NJ_T0087180.1 MGP_C57BL6NJ_G0033500.1 mouse_genomes_project 7 136276346 136291530 - MGP_C57BL6NJ_P0087180 Taok2 protein_coding protein_coding MGP_C57BL6NJ_T0087181.1 MGP_C57BL6NJ_G0033500.1 mouse_genomes_project 7 136286623 136289786 - Taok2 protein_coding retained_intron MGP_C57BL6NJ_T0005451.1 MGP_C57BL6NJ_G0004620.1 mouse_genomes_project 7 136024388 136025440 - 2510046G10Rik antisense antisense MGP_C57BL6NJ_T0005452.1 MGP_C57BL6NJ_G0004620.1 mouse_genomes_project 7 136025068 136025416 - 2510046G10Rik antisense antisense MGP_C57BL6NJ_T0082011.1 MGP_C57BL6NJ_G0032048.1 mouse_genomes_project 7 3686083 3721961 + MGP_C57BL6NJ_P0082011 Smim17 protein_coding protein_coding MGP_C57BL6NJ_T0082012.1 MGP_C57BL6NJ_G0032048.1 mouse_genomes_project 7 3686116 3695769 + Smim17 protein_coding processed_transcript MGP_C57BL6NJ_T0082014.1 MGP_C57BL6NJ_G0032048.1 mouse_genomes_project 7 3705604 3724604 + MGP_C57BL6NJ_P0082014 Smim17 protein_coding protein_coding MGP_C57BL6NJ_T0002438.1 MGP_C57BL6NJ_G0002327.1 mouse_genomes_project 7 131376870 131382309 + TEC TEC MGP_C57BL6NJ_T0084572.1 MGP_C57BL6NJ_G0032765.1 mouse_genomes_project 7 50066254 50086559 - MGP_C57BL6NJ_P0084572 Mrgpra1 protein_coding protein_coding MGP_C57BL6NJ_T0009196.1 MGP_C57BL6NJ_G0007405.1 mouse_genomes_project 7 130236331 130274813 + Gm45079 lincRNA lincRNA MGP_C57BL6NJ_T0084849.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70357151 70402100 - Lrrk1 protein_coding processed_transcript MGP_C57BL6NJ_T0084850.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70398374 70532241 - MGP_C57BL6NJ_P0084850 Lrrk1 protein_coding protein_coding MGP_C57BL6NJ_T0084851.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70398381 70405201 - Lrrk1 protein_coding retained_intron MGP_C57BL6NJ_T0084852.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70398813 70421939 - MGP_C57BL6NJ_P0084852 Lrrk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084853.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70405819 70409430 - Lrrk1 protein_coding retained_intron MGP_C57BL6NJ_T0084854.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70482995 70484753 - Lrrk1 protein_coding processed_transcript MGP_C57BL6NJ_T0084855.1 MGP_C57BL6NJ_G0032834.1 mouse_genomes_project 7 70483165 70532198 - Lrrk1 protein_coding retained_intron MGP_C57BL6NJ_T0085158.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484261 85506043 + MGP_C57BL6NJ_P0085158 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085159.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484262 85506043 + MGP_C57BL6NJ_P0085159 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085160.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484276 85502530 + Prc1 protein_coding retained_intron MGP_C57BL6NJ_T0085161.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484284 85505368 + MGP_C57BL6NJ_P0085161 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085162.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484285 85494276 + Prc1 protein_coding retained_intron MGP_C57BL6NJ_T0085163.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484290 85506035 + MGP_C57BL6NJ_P0085163 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085164.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484316 85506038 + MGP_C57BL6NJ_P0085164 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085165.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85484324 85494466 + Prc1 protein_coding retained_intron MGP_C57BL6NJ_T0085166.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85494239 85495802 + Prc1 protein_coding retained_intron MGP_C57BL6NJ_T0085167.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85494573 85500668 + MGP_C57BL6NJ_P0085167 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085168.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85499174 85506041 + MGP_C57BL6NJ_P0085168 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085169.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85500632 85503278 + MGP_C57BL6NJ_P0085169 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085170.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85500888 85505301 + MGP_C57BL6NJ_P0085170 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0085171.1 MGP_C57BL6NJ_G0032893.1 mouse_genomes_project 7 85502091 85503481 + MGP_C57BL6NJ_P0085171 Prc1 protein_coding protein_coding MGP_C57BL6NJ_T0082073.1 MGP_C57BL6NJ_G0032090.1 mouse_genomes_project 7 10523921 10539494 - MGP_C57BL6NJ_P0082073 Vmn2r53 protein_coding protein_coding MGP_C57BL6NJ_T0086733.1 MGP_C57BL6NJ_G0033418.1 mouse_genomes_project 7 128982604 128997918 - MGP_C57BL6NJ_P0086733 Zp2 protein_coding protein_coding MGP_C57BL6NJ_T0011968.1 MGP_C57BL6NJ_G0010053.1 mouse_genomes_project 7 153956311 153956535 + Gm27539 misc_RNA misc_RNA MGP_C57BL6NJ_T0082100.1 MGP_C57BL6NJ_G0032100.1 mouse_genomes_project 7 10901039 10908992 + MGP_C57BL6NJ_P0082100 Zfp324 protein_coding protein_coding MGP_C57BL6NJ_T0082101.1 MGP_C57BL6NJ_G0032100.1 mouse_genomes_project 7 10901046 10909406 + MGP_C57BL6NJ_P0082101 Zfp324 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082102.1 MGP_C57BL6NJ_G0032100.1 mouse_genomes_project 7 10901068 10908969 + MGP_C57BL6NJ_P0082102 Zfp324 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086376.1 MGP_C57BL6NJ_G0033342.1 mouse_genomes_project 7 117891264 117917669 - MGP_C57BL6NJ_P0086376 Nrip3 protein_coding protein_coding MGP_C57BL6NJ_T0086377.1 MGP_C57BL6NJ_G0033342.1 mouse_genomes_project 7 117891268 117917189 - MGP_C57BL6NJ_P0086377 Nrip3 protein_coding protein_coding MGP_C57BL6NJ_T0082788.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24517810 24544673 + MGP_C57BL6NJ_P0082788 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082789.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24518493 24521389 + MGP_C57BL6NJ_P0082789 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082790.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24528591 24535310 + Cic protein_coding processed_transcript MGP_C57BL6NJ_T0082791.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24529878 24535273 + Cic protein_coding processed_transcript MGP_C57BL6NJ_T0082792.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24532416 24544659 + MGP_C57BL6NJ_P0082792 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082793.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24532416 24544662 + MGP_C57BL6NJ_P0082793 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082794.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24533150 24541683 + MGP_C57BL6NJ_P0082794 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082795.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24533557 24535536 + Cic protein_coding processed_transcript MGP_C57BL6NJ_T0082796.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24535010 24536025 + Cic protein_coding retained_intron MGP_C57BL6NJ_T0082797.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24536163 24544656 + Cic protein_coding retained_intron MGP_C57BL6NJ_T0082798.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24539603 24540047 + Cic protein_coding retained_intron MGP_C57BL6NJ_T0082799.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24541511 24544659 + MGP_C57BL6NJ_P0082799 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082800.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24541548 24542479 + Cic protein_coding retained_intron MGP_C57BL6NJ_T0082801.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24542335 24542862 + Cic protein_coding retained_intron MGP_C57BL6NJ_T0082802.1 MGP_C57BL6NJ_G0032307.1 mouse_genomes_project 7 24543420 24544659 + MGP_C57BL6NJ_P0082802 Cic protein_coding protein_coding MGP_C57BL6NJ_T0082398.1 MGP_C57BL6NJ_G0032196.1 mouse_genomes_project 7 17751517 17784374 + MGP_C57BL6NJ_P0082398 Nova2 protein_coding protein_coding MGP_C57BL6NJ_T0018830.1 MGP_C57BL6NJ_G0016062.1 mouse_genomes_project 7 51790397 51798342 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018831.1 MGP_C57BL6NJ_G0016062.1 mouse_genomes_project 7 51793739 51798989 + processed_transcript processed_transcript MGP_C57BL6NJ_T0083249.1 MGP_C57BL6NJ_G0032425.1 mouse_genomes_project 7 28978200 29019689 - MGP_C57BL6NJ_P0083249 protein_coding protein_coding MGP_C57BL6NJ_T0084739.1 MGP_C57BL6NJ_G0032809.1 mouse_genomes_project 7 63441584 63451748 - MGP_C57BL6NJ_P0084739 Gm38393 protein_coding protein_coding MGP_C57BL6NJ_T0087361.1 MGP_C57BL6NJ_G0033538.1 mouse_genomes_project 7 137088758 137094971 - MGP_C57BL6NJ_P0087361 Ccdc189 protein_coding protein_coding MGP_C57BL6NJ_T0087362.1 MGP_C57BL6NJ_G0033538.1 mouse_genomes_project 7 137089735 137092716 - MGP_C57BL6NJ_P0087362 Ccdc189 protein_coding protein_coding MGP_C57BL6NJ_T0087363.1 MGP_C57BL6NJ_G0033538.1 mouse_genomes_project 7 137089762 137092098 - Ccdc189 protein_coding retained_intron MGP_C57BL6NJ_T0087364.1 MGP_C57BL6NJ_G0033538.1 mouse_genomes_project 7 137091588 137094545 - Ccdc189 protein_coding retained_intron MGP_C57BL6NJ_T0087365.1 MGP_C57BL6NJ_G0033538.1 mouse_genomes_project 7 137093439 137094756 - Ccdc189 protein_coding retained_intron MGP_C57BL6NJ_T0082970.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26798897 26831554 - MGP_C57BL6NJ_P0082970 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0082971.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26798901 26827521 - MGP_C57BL6NJ_P0082971 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0082972.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26798903 26831554 - MGP_C57BL6NJ_P0082972 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0082973.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26799759 26827471 - MGP_C57BL6NJ_P0082973 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0082974.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26799840 26800732 - Ltbp4 protein_coding retained_intron MGP_C57BL6NJ_T0082975.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26800384 26804550 - MGP_C57BL6NJ_P0082975 Ltbp4 protein_coding protein_coding MGP_C57BL6NJ_T0082976.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26801321 26804569 - Ltbp4 protein_coding retained_intron MGP_C57BL6NJ_T0082977.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26802755 26804353 - Ltbp4 protein_coding retained_intron MGP_C57BL6NJ_T0082978.1 MGP_C57BL6NJ_G0032355.1 mouse_genomes_project 7 26805450 26827506 - Ltbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0016169.1 MGP_C57BL6NJ_G0014214.1 mouse_genomes_project 7 23803835 23804038 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011955.1 MGP_C57BL6NJ_G0010040.1 mouse_genomes_project 7 97231653 97231861 - Gm27660 misc_RNA misc_RNA MGP_C57BL6NJ_T0103542.1 MGP_C57BL6NJ_G0041334.1 mouse_genomes_project 7 112144986 112145952 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0088219.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152512662 152565937 + MGP_C57BL6NJ_P0088219 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088220.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152512662 152571178 + MGP_C57BL6NJ_P0088220 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088221.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152512927 152569861 + MGP_C57BL6NJ_P0088221 Brsk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088222.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152513003 152567882 + MGP_C57BL6NJ_P0088222 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088223.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152513006 152569164 + MGP_C57BL6NJ_P0088223 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088224.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152513006 152571185 + MGP_C57BL6NJ_P0088224 Brsk2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088225.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152513006 152571179 + MGP_C57BL6NJ_P0088225 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088226.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152548470 152569079 + MGP_C57BL6NJ_P0088226 Brsk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088227.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152551782 152569079 + MGP_C57BL6NJ_P0088227 Brsk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088228.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152551822 152570103 + MGP_C57BL6NJ_P0088228 Brsk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088229.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152552643 152569079 + MGP_C57BL6NJ_P0088229 Brsk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088230.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152560085 152569082 + MGP_C57BL6NJ_P0088230 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088231.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152560141 152569408 + MGP_C57BL6NJ_P0088231 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0088232.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152564401 152570999 + Brsk2 protein_coding processed_transcript MGP_C57BL6NJ_T0088233.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152564429 152569607 + Brsk2 protein_coding processed_transcript MGP_C57BL6NJ_T0088234.1 MGP_C57BL6NJ_G0033738.1 mouse_genomes_project 7 152565592 152568373 + MGP_C57BL6NJ_P0088234 Brsk2 protein_coding protein_coding MGP_C57BL6NJ_T0082704.1 MGP_C57BL6NJ_G0032287.1 mouse_genomes_project 7 23758196 23762240 - MGP_C57BL6NJ_P0082704 Tex101 protein_coding protein_coding MGP_C57BL6NJ_T0082705.1 MGP_C57BL6NJ_G0032287.1 mouse_genomes_project 7 23758531 23767048 - MGP_C57BL6NJ_P0082705 Tex101 protein_coding protein_coding MGP_C57BL6NJ_T0082706.1 MGP_C57BL6NJ_G0032287.1 mouse_genomes_project 7 23758531 23767048 - MGP_C57BL6NJ_P0082706 Tex101 protein_coding protein_coding MGP_C57BL6NJ_T0085492.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96494708 96498294 + MGP_C57BL6NJ_P0085492 Crebzf protein_coding protein_coding MGP_C57BL6NJ_T0085493.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96494760 96499907 + MGP_C57BL6NJ_P0085493 Crebzf protein_coding protein_coding MGP_C57BL6NJ_T0085494.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96495649 96496681 + Crebzf protein_coding processed_transcript MGP_C57BL6NJ_T0085495.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96495649 96496356 + MGP_C57BL6NJ_P0085495 Crebzf protein_coding protein_coding MGP_C57BL6NJ_T0085496.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96495821 96497973 + Crebzf protein_coding processed_transcript MGP_C57BL6NJ_T0085497.1 MGP_C57BL6NJ_G0032990.1 mouse_genomes_project 7 96496682 96498285 + Crebzf protein_coding processed_transcript MGP_C57BL6NJ_T0088352.1 MGP_C57BL6NJ_G0033761.1 mouse_genomes_project 7 153697397 153712595 + MGP_C57BL6NJ_P0088352 Cd81 protein_coding protein_coding MGP_C57BL6NJ_T0088353.1 MGP_C57BL6NJ_G0033761.1 mouse_genomes_project 7 153697452 153710274 + Cd81 protein_coding retained_intron MGP_C57BL6NJ_T0088354.1 MGP_C57BL6NJ_G0033761.1 mouse_genomes_project 7 153703234 153711823 + Cd81 protein_coding processed_transcript MGP_C57BL6NJ_T0088355.1 MGP_C57BL6NJ_G0033761.1 mouse_genomes_project 7 153710861 153712266 + Cd81 protein_coding retained_intron MGP_C57BL6NJ_T0011200.1 MGP_C57BL6NJ_G0009285.1 mouse_genomes_project 7 154670745 154670839 + Mir6404 miRNA miRNA MGP_C57BL6NJ_T0016170.1 MGP_C57BL6NJ_G0014215.1 mouse_genomes_project 7 24037933 24038459 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084305.1 MGP_C57BL6NJ_G0032696.1 mouse_genomes_project 7 47813535 47846899 - MGP_C57BL6NJ_P0084305 Trpm4 protein_coding protein_coding MGP_C57BL6NJ_T0009055.1 MGP_C57BL6NJ_G0007311.1 mouse_genomes_project 7 45783789 45784147 + Gm44818 lincRNA lincRNA MGP_C57BL6NJ_T0083535.1 MGP_C57BL6NJ_G0032491.1 mouse_genomes_project 7 30704175 30706009 - MGP_C57BL6NJ_P0083535 Tmem147 protein_coding protein_coding MGP_C57BL6NJ_T0082053.1 MGP_C57BL6NJ_G0032076.1 mouse_genomes_project 7 9557351 9558272 - MGP_C57BL6NJ_P0082053 Vmn1r72 protein_coding protein_coding MGP_C57BL6NJ_T0016357.1 MGP_C57BL6NJ_G0014402.1 mouse_genomes_project 7 125060475 125060763 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086320.1 MGP_C57BL6NJ_G0033315.1 mouse_genomes_project 7 116508865 116509858 + MGP_C57BL6NJ_P0086320 Olfr498 protein_coding protein_coding MGP_C57BL6NJ_T0016249.1 MGP_C57BL6NJ_G0014294.1 mouse_genomes_project 7 44203527 44203649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082682.1 MGP_C57BL6NJ_G0032280.1 mouse_genomes_project 7 23613257 23621174 + MGP_C57BL6NJ_P0082682 Irgq protein_coding protein_coding MGP_C57BL6NJ_T0018794.1 MGP_C57BL6NJ_G0016048.1 mouse_genomes_project 7 23991807 24016778 + Gm5893 processed_transcript lincRNA MGP_C57BL6NJ_T0018795.1 MGP_C57BL6NJ_G0016048.1 mouse_genomes_project 7 23991807 24016761 + Gm5893 processed_transcript processed_transcript MGP_C57BL6NJ_T0018796.1 MGP_C57BL6NJ_G0016048.1 mouse_genomes_project 7 23995121 23998885 + Gm5893 processed_transcript retained_intron MGP_C57BL6NJ_T0018797.1 MGP_C57BL6NJ_G0016048.1 mouse_genomes_project 7 24001340 24016776 + Gm5893 processed_transcript retained_intron MGP_C57BL6NJ_T0088018.1 MGP_C57BL6NJ_G0033702.1 mouse_genomes_project 7 151575554 151586283 + MGP_C57BL6NJ_P0088018 B4galnt4 protein_coding protein_coding MGP_C57BL6NJ_T0085999.1 MGP_C57BL6NJ_G0033112.1 mouse_genomes_project 7 109808226 109809297 + MGP_C57BL6NJ_P0085999 Olfr561 protein_coding protein_coding MGP_C57BL6NJ_T0086398.1 MGP_C57BL6NJ_G0033347.1 mouse_genomes_project 7 118225766 118229105 - MGP_C57BL6NJ_P0086398 protein_coding protein_coding MGP_C57BL6NJ_T0005417.1 MGP_C57BL6NJ_G0004597.1 mouse_genomes_project 7 103139728 103172993 - Gm15414 antisense antisense MGP_C57BL6NJ_T0084895.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71725936 71861120 - MGP_C57BL6NJ_P0084895 Lrrc28 protein_coding protein_coding MGP_C57BL6NJ_T0084896.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71725937 71857195 - MGP_C57BL6NJ_P0084896 Lrrc28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084897.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71726936 71792456 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084898.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71742108 71857231 - MGP_C57BL6NJ_P0084898 Lrrc28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084899.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71742233 71747762 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084900.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71744172 71835980 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084901.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71744263 71821758 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084902.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71744273 71835929 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084903.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71758268 71861093 - MGP_C57BL6NJ_P0084903 Lrrc28 protein_coding protein_coding MGP_C57BL6NJ_T0084904.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71808396 71861096 - MGP_C57BL6NJ_P0084904 Lrrc28 protein_coding protein_coding MGP_C57BL6NJ_T0084905.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71809398 71835951 - Lrrc28 protein_coding processed_transcript MGP_C57BL6NJ_T0084906.1 MGP_C57BL6NJ_G0032842.1 mouse_genomes_project 7 71834014 71861157 - MGP_C57BL6NJ_P0084906 Lrrc28 protein_coding protein_coding MGP_C57BL6NJ_T0002389.1 MGP_C57BL6NJ_G0002279.1 mouse_genomes_project 7 68527251 68527723 + TEC TEC MGP_C57BL6NJ_T0016260.1 MGP_C57BL6NJ_G0014305.1 mouse_genomes_project 7 45715930 45716483 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086269.1 MGP_C57BL6NJ_G0033271.1 mouse_genomes_project 7 114737863 114738814 - MGP_C57BL6NJ_P0086269 protein_coding protein_coding MGP_C57BL6NJ_T0086147.1 MGP_C57BL6NJ_G0033236.1 mouse_genomes_project 7 112884317 112885393 + MGP_C57BL6NJ_P0086147 Olfr689 protein_coding protein_coding MGP_C57BL6NJ_T0082511.1 MGP_C57BL6NJ_G0032226.1 mouse_genomes_project 7 18376590 18384293 + MGP_C57BL6NJ_P0082511 protein_coding protein_coding MGP_C57BL6NJ_T0086798.1 MGP_C57BL6NJ_G0033440.1 mouse_genomes_project 7 130907464 130910257 - Cog7 protein_coding retained_intron MGP_C57BL6NJ_T0086799.1 MGP_C57BL6NJ_G0033440.1 mouse_genomes_project 7 130907772 131023928 - MGP_C57BL6NJ_P0086799 Cog7 protein_coding protein_coding MGP_C57BL6NJ_T0086801.1 MGP_C57BL6NJ_G0033440.1 mouse_genomes_project 7 130959313 131023928 - MGP_C57BL6NJ_P0086801 Cog7 protein_coding protein_coding MGP_C57BL6NJ_T0086802.1 MGP_C57BL6NJ_G0033440.1 mouse_genomes_project 7 130965345 131023911 - Cog7 protein_coding retained_intron MGP_C57BL6NJ_T0002406.1 MGP_C57BL6NJ_G0002295.1 mouse_genomes_project 7 80860421 80862478 + TEC TEC MGP_C57BL6NJ_T0083784.1 MGP_C57BL6NJ_G0032549.1 mouse_genomes_project 7 36358342 36412194 - MGP_C57BL6NJ_P0083784 Gpatch1 protein_coding protein_coding MGP_C57BL6NJ_T0083785.1 MGP_C57BL6NJ_G0032549.1 mouse_genomes_project 7 36358350 36412175 - MGP_C57BL6NJ_P0083785 Gpatch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083786.1 MGP_C57BL6NJ_G0032549.1 mouse_genomes_project 7 36364922 36412194 - MGP_C57BL6NJ_P0083786 Gpatch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083787.1 MGP_C57BL6NJ_G0032549.1 mouse_genomes_project 7 36364955 36366623 - Gpatch1 protein_coding retained_intron MGP_C57BL6NJ_T0083788.1 MGP_C57BL6NJ_G0032549.1 mouse_genomes_project 7 36396819 36412149 - Gpatch1 protein_coding retained_intron MGP_C57BL6NJ_T0016121.1 MGP_C57BL6NJ_G0014166.1 mouse_genomes_project 7 1589031 1589825 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016239.1 MGP_C57BL6NJ_G0014284.1 mouse_genomes_project 7 42940584 42941607 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086073.1 MGP_C57BL6NJ_G0033184.1 mouse_genomes_project 7 111392129 111394786 - MGP_C57BL6NJ_P0086073 Ubqln3 protein_coding protein_coding MGP_C57BL6NJ_T0103355.1 MGP_C57BL6NJ_G0041148.1 mouse_genomes_project 7 12662616 12663058 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011199.1 MGP_C57BL6NJ_G0009284.1 mouse_genomes_project 7 154506754 154506820 + Gm22064 miRNA miRNA MGP_C57BL6NJ_T0088204.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152261355 152269798 + MGP_C57BL6NJ_P0088204 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088205.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152261384 152297672 + MGP_C57BL6NJ_P0088205 Muc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088206.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152266718 152268263 + MGP_C57BL6NJ_P0088206 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088207.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152270515 152272814 + MGP_C57BL6NJ_P0088207 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088208.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152273406 152274085 + MGP_C57BL6NJ_P0088208 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088209.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152275474 152275921 + MGP_C57BL6NJ_P0088209 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088210.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152285744 152297828 + MGP_C57BL6NJ_P0088210 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0088211.1 MGP_C57BL6NJ_G0033734.1 mouse_genomes_project 7 152287964 152297825 + MGP_C57BL6NJ_P0088211 Muc2 protein_coding protein_coding MGP_C57BL6NJ_T0005432.1 MGP_C57BL6NJ_G0004607.1 mouse_genomes_project 7 120837633 120846345 - Parvaos antisense antisense MGP_C57BL6NJ_T0103394.1 MGP_C57BL6NJ_G0041186.1 mouse_genomes_project 7 31499286 31499673 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085866.1 MGP_C57BL6NJ_G0033071.1 mouse_genomes_project 7 108776338 108780752 + MGP_C57BL6NJ_P0085866 Phox2a protein_coding protein_coding MGP_C57BL6NJ_T0088426.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 154744746 155189274 + MGP_C57BL6NJ_P0088426 protein_coding protein_coding MGP_C57BL6NJ_T0088427.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 154775794 154885834 + MGP_C57BL6NJ_P0088427 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088428.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 154775794 154885692 + MGP_C57BL6NJ_P0088428 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088429.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 154932465 155189274 + MGP_C57BL6NJ_P0088429 protein_coding protein_coding MGP_C57BL6NJ_T0088430.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 155043586 155187455 + MGP_C57BL6NJ_P0088430 protein_coding protein_coding MGP_C57BL6NJ_T0088431.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 155043640 155189262 + protein_coding retained_intron MGP_C57BL6NJ_T0088432.1 MGP_C57BL6NJ_G0033779.1 mouse_genomes_project 7 155182582 155185425 + protein_coding processed_transcript MGP_C57BL6NJ_T0083425.1 MGP_C57BL6NJ_G0032466.1 mouse_genomes_project 7 30296328 30303583 - MGP_C57BL6NJ_P0083425 Lrfn3 protein_coding protein_coding MGP_C57BL6NJ_T0081757.1 MGP_C57BL6NJ_G0031977.1 mouse_genomes_project 7 692740 765697 - MGP_C57BL6NJ_P0081757 protein_coding protein_coding MGP_C57BL6NJ_T0009115.1 MGP_C57BL6NJ_G0007358.1 mouse_genomes_project 7 78514020 78523904 + lincRNA lincRNA MGP_C57BL6NJ_T0016108.1 MGP_C57BL6NJ_G0014153.1 mouse_genomes_project 7 57890 58685 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002375.1 MGP_C57BL6NJ_G0002265.1 mouse_genomes_project 7 58447149 58448540 + TEC TEC MGP_C57BL6NJ_T0009112.1 MGP_C57BL6NJ_G0007356.1 mouse_genomes_project 7 78354001 78354558 - lincRNA lincRNA MGP_C57BL6NJ_T0009163.1 MGP_C57BL6NJ_G0007386.1 mouse_genomes_project 7 105196753 105219305 - A630091E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0083358.1 MGP_C57BL6NJ_G0032452.1 mouse_genomes_project 7 30078053 30090712 + MGP_C57BL6NJ_P0083358 Gm5113 protein_coding protein_coding MGP_C57BL6NJ_T0082086.1 MGP_C57BL6NJ_G0032096.1 mouse_genomes_project 7 10798990 10810843 + Zfp128 protein_coding retained_intron MGP_C57BL6NJ_T0082087.1 MGP_C57BL6NJ_G0032096.1 mouse_genomes_project 7 10798990 10812389 + MGP_C57BL6NJ_P0082087 Zfp128 protein_coding protein_coding MGP_C57BL6NJ_T0088086.1 MGP_C57BL6NJ_G0033715.1 mouse_genomes_project 7 151810896 151811699 - MGP_C57BL6NJ_P0088086 Sct protein_coding protein_coding MGP_C57BL6NJ_T0088087.1 MGP_C57BL6NJ_G0033715.1 mouse_genomes_project 7 151810919 151811697 - MGP_C57BL6NJ_P0088087 Sct protein_coding protein_coding MGP_C57BL6NJ_T0082783.1 MGP_C57BL6NJ_G0032305.1 mouse_genomes_project 7 24463926 24473520 - MGP_C57BL6NJ_P0082783 Gsk3a protein_coding protein_coding MGP_C57BL6NJ_T0082784.1 MGP_C57BL6NJ_G0032305.1 mouse_genomes_project 7 24463926 24473520 - MGP_C57BL6NJ_P0082784 Gsk3a protein_coding protein_coding MGP_C57BL6NJ_T0082785.1 MGP_C57BL6NJ_G0032305.1 mouse_genomes_project 7 24465133 24466913 - Gsk3a protein_coding retained_intron MGP_C57BL6NJ_T0086311.1 MGP_C57BL6NJ_G0033306.1 mouse_genomes_project 7 116128719 116129817 - MGP_C57BL6NJ_P0086311 protein_coding protein_coding MGP_C57BL6NJ_T0002416.1 MGP_C57BL6NJ_G0002305.1 mouse_genomes_project 7 84550170 84554612 + TEC TEC MGP_C57BL6NJ_T0086267.1 MGP_C57BL6NJ_G0033269.1 mouse_genomes_project 7 114702894 114703854 + MGP_C57BL6NJ_P0086267 Olfr703 protein_coding protein_coding MGP_C57BL6NJ_T0016185.1 MGP_C57BL6NJ_G0014230.1 mouse_genomes_project 7 26755955 26756580 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085994.1 MGP_C57BL6NJ_G0033108.1 mouse_genomes_project 7 109729930 109739622 + MGP_C57BL6NJ_P0085994 Olfr558 protein_coding protein_coding MGP_C57BL6NJ_T0085410.1 MGP_C57BL6NJ_G0032954.1 mouse_genomes_project 7 92047314 92048396 - MGP_C57BL6NJ_P0085410 Olfr310 protein_coding protein_coding MGP_C57BL6NJ_T0087801.1 MGP_C57BL6NJ_G0033624.1 mouse_genomes_project 7 145002221 145062466 - MGP_C57BL6NJ_P0087801 Fam196a protein_coding protein_coding MGP_C57BL6NJ_T0011075.1 MGP_C57BL6NJ_G0009160.1 mouse_genomes_project 7 103142 103225 + Mir290a miRNA miRNA MGP_C57BL6NJ_T0009006.1 MGP_C57BL6NJ_G0007274.1 mouse_genomes_project 7 30110592 30112852 + lincRNA lincRNA MGP_C57BL6NJ_T0103320.1 MGP_C57BL6NJ_G0041113.1 mouse_genomes_project 7 7877642 7888863 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009212.1 MGP_C57BL6NJ_G0007417.1 mouse_genomes_project 7 136243923 136253238 + Gm44854 lincRNA lincRNA MGP_C57BL6NJ_T0018821.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48118578 48128014 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018822.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48118718 48128014 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018823.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48118884 48127703 - processed_transcript retained_intron MGP_C57BL6NJ_T0018824.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48118907 48128184 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018825.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48119003 48128014 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018826.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48119869 48128030 - processed_transcript retained_intron MGP_C57BL6NJ_T0018827.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48123004 48123895 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018828.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48123031 48128051 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018829.1 MGP_C57BL6NJ_G0016061.1 mouse_genomes_project 7 48126929 48128013 - processed_transcript retained_intron MGP_C57BL6NJ_T0083637.1 MGP_C57BL6NJ_G0032509.1 mouse_genomes_project 7 31127420 31139026 + MGP_C57BL6NJ_P0083637 Lgi4 protein_coding protein_coding MGP_C57BL6NJ_T0083638.1 MGP_C57BL6NJ_G0032509.1 mouse_genomes_project 7 31128645 31131748 + MGP_C57BL6NJ_P0083638 Lgi4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083639.1 MGP_C57BL6NJ_G0032509.1 mouse_genomes_project 7 31128683 31132153 + MGP_C57BL6NJ_P0083639 Lgi4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083640.1 MGP_C57BL6NJ_G0032509.1 mouse_genomes_project 7 31131628 31132675 + MGP_C57BL6NJ_P0083640 Lgi4 protein_coding protein_coding MGP_C57BL6NJ_T0084032.1 MGP_C57BL6NJ_G0032620.1 mouse_genomes_project 7 46101849 46105197 + MGP_C57BL6NJ_P0084032 Klk5 protein_coding protein_coding MGP_C57BL6NJ_T0084033.1 MGP_C57BL6NJ_G0032620.1 mouse_genomes_project 7 46102147 46111024 + MGP_C57BL6NJ_P0084033 Klk5 protein_coding protein_coding MGP_C57BL6NJ_T0088370.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153751008 153794146 + MGP_C57BL6NJ_P0088370 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088371.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153751161 153794146 + MGP_C57BL6NJ_P0088371 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088372.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153751391 153794146 + MGP_C57BL6NJ_P0088372 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088373.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153751900 154091044 + MGP_C57BL6NJ_P0088373 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088374.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153752197 154090127 + MGP_C57BL6NJ_P0088374 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088375.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153752997 153794146 + MGP_C57BL6NJ_P0088375 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0088376.1 MGP_C57BL6NJ_G0033764.1 mouse_genomes_project 7 153753840 153794146 + MGP_C57BL6NJ_P0088376 Kcnq1 protein_coding protein_coding MGP_C57BL6NJ_T0082444.1 MGP_C57BL6NJ_G0032209.1 mouse_genomes_project 7 17998572 18002393 + MGP_C57BL6NJ_P0082444 Snrpd2 protein_coding protein_coding MGP_C57BL6NJ_T0082445.1 MGP_C57BL6NJ_G0032209.1 mouse_genomes_project 7 17998709 17999943 + Snrpd2 protein_coding retained_intron MGP_C57BL6NJ_T0082630.1 MGP_C57BL6NJ_G0032268.1 mouse_genomes_project 7 23261791 23273730 - MGP_C57BL6NJ_P0082630 Zfp109 protein_coding protein_coding MGP_C57BL6NJ_T0082631.1 MGP_C57BL6NJ_G0032268.1 mouse_genomes_project 7 23262200 23273395 - MGP_C57BL6NJ_P0082631 Zfp109 protein_coding protein_coding MGP_C57BL6NJ_T0082632.1 MGP_C57BL6NJ_G0032268.1 mouse_genomes_project 7 23262267 23272802 - MGP_C57BL6NJ_P0082632 Zfp109 protein_coding protein_coding MGP_C57BL6NJ_T0005312.1 MGP_C57BL6NJ_G0004522.1 mouse_genomes_project 7 16721669 16852120 - antisense antisense MGP_C57BL6NJ_T0005313.1 MGP_C57BL6NJ_G0004522.1 mouse_genomes_project 7 16725003 16852164 - antisense antisense MGP_C57BL6NJ_T0084573.1 MGP_C57BL6NJ_G0032766.1 mouse_genomes_project 7 50219798 50222183 - MGP_C57BL6NJ_P0084573 protein_coding protein_coding MGP_C57BL6NJ_T0101851.1 MGP_C57BL6NJ_G0039897.1 mouse_genomes_project 7 46645275 46645365 + Snord88c snoRNA snoRNA MGP_C57BL6NJ_T0085057.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84473353 84483199 + MGP_C57BL6NJ_P0085057 Fanci protein_coding protein_coding MGP_C57BL6NJ_T0085058.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84473732 84490895 + MGP_C57BL6NJ_P0085058 Fanci protein_coding protein_coding MGP_C57BL6NJ_T0085059.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84473736 84532804 + MGP_C57BL6NJ_P0085059 Fanci protein_coding protein_coding MGP_C57BL6NJ_T0085060.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84473777 84532804 + MGP_C57BL6NJ_P0085060 Fanci protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085061.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84480448 84517166 + MGP_C57BL6NJ_P0085061 Fanci protein_coding protein_coding MGP_C57BL6NJ_T0085062.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84494219 84508711 + MGP_C57BL6NJ_P0085062 Fanci protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085063.1 MGP_C57BL6NJ_G0032871.1 mouse_genomes_project 7 84523223 84528266 + MGP_C57BL6NJ_P0085063 Fanci protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086901.1 MGP_C57BL6NJ_G0033457.1 mouse_genomes_project 7 132588261 132593975 + MGP_C57BL6NJ_P0086901 Aqp8 protein_coding protein_coding MGP_C57BL6NJ_T0086902.1 MGP_C57BL6NJ_G0033457.1 mouse_genomes_project 7 132588282 132593957 + MGP_C57BL6NJ_P0086902 Aqp8 protein_coding protein_coding MGP_C57BL6NJ_T0086903.1 MGP_C57BL6NJ_G0033457.1 mouse_genomes_project 7 132589721 132593969 + Aqp8 protein_coding processed_transcript MGP_C57BL6NJ_T0086300.1 MGP_C57BL6NJ_G0033295.1 mouse_genomes_project 7 115890179 115891262 + MGP_C57BL6NJ_P0086300 Olfr472 protein_coding protein_coding MGP_C57BL6NJ_T0083423.1 MGP_C57BL6NJ_G0032464.1 mouse_genomes_project 7 30258270 30260760 - MGP_C57BL6NJ_P0083423 Sdhaf1 protein_coding protein_coding MGP_C57BL6NJ_T0086420.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 118998761 119046321 + MGP_C57BL6NJ_P0086420 Ampd3 protein_coding protein_coding MGP_C57BL6NJ_T0086421.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 118998896 119022799 + Ampd3 protein_coding processed_transcript MGP_C57BL6NJ_T0086422.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 119003157 119046807 + MGP_C57BL6NJ_P0086422 Ampd3 protein_coding protein_coding MGP_C57BL6NJ_T0086423.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 119003341 119026238 + Ampd3 protein_coding retained_intron MGP_C57BL6NJ_T0086424.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 119004225 119020329 + MGP_C57BL6NJ_P0086424 Ampd3 protein_coding protein_coding MGP_C57BL6NJ_T0086425.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 119004797 119020251 + MGP_C57BL6NJ_P0086425 Ampd3 protein_coding protein_coding MGP_C57BL6NJ_T0086426.1 MGP_C57BL6NJ_G0033353.1 mouse_genomes_project 7 119009200 119022844 + MGP_C57BL6NJ_P0086426 Ampd3 protein_coding protein_coding MGP_C57BL6NJ_T0009036.1 MGP_C57BL6NJ_G0007300.1 mouse_genomes_project 7 41491302 41498468 - lincRNA lincRNA MGP_C57BL6NJ_T0009037.1 MGP_C57BL6NJ_G0007300.1 mouse_genomes_project 7 41491306 41498485 - lincRNA lincRNA MGP_C57BL6NJ_T0009038.1 MGP_C57BL6NJ_G0007300.1 mouse_genomes_project 7 41491307 41498506 - lincRNA lincRNA MGP_C57BL6NJ_T0009039.1 MGP_C57BL6NJ_G0007300.1 mouse_genomes_project 7 41491360 41498469 - lincRNA lincRNA MGP_C57BL6NJ_T0009199.1 MGP_C57BL6NJ_G0007408.1 mouse_genomes_project 7 133836493 133940382 - 3100003L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0016332.1 MGP_C57BL6NJ_G0014377.1 mouse_genomes_project 7 104552050 104552441 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088112.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151948536 151954492 - Pddc1 protein_coding retained_intron MGP_C57BL6NJ_T0088113.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151948585 151949733 - Pddc1 protein_coding retained_intron MGP_C57BL6NJ_T0088114.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151948585 151954538 - MGP_C57BL6NJ_P0088114 Pddc1 protein_coding protein_coding MGP_C57BL6NJ_T0088115.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151948587 151954480 - Pddc1 protein_coding retained_intron MGP_C57BL6NJ_T0088116.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151951245 151954467 - Pddc1 protein_coding retained_intron MGP_C57BL6NJ_T0088117.1 MGP_C57BL6NJ_G0033721.1 mouse_genomes_project 7 151951952 151954478 - Pddc1 protein_coding retained_intron MGP_C57BL6NJ_T0084008.1 MGP_C57BL6NJ_G0032609.1 mouse_genomes_project 7 45877012 45887311 - MGP_C57BL6NJ_P0084008 Siglece protein_coding protein_coding MGP_C57BL6NJ_T0084009.1 MGP_C57BL6NJ_G0032609.1 mouse_genomes_project 7 45877483 45886503 - MGP_C57BL6NJ_P0084009 Siglece protein_coding protein_coding MGP_C57BL6NJ_T0082485.1 MGP_C57BL6NJ_G0032220.1 mouse_genomes_project 7 18232621 18234189 + Ppp1r13l protein_coding processed_transcript MGP_C57BL6NJ_T0082486.1 MGP_C57BL6NJ_G0032220.1 mouse_genomes_project 7 18232642 18242835 + MGP_C57BL6NJ_P0082486 Ppp1r13l protein_coding protein_coding MGP_C57BL6NJ_T0082487.1 MGP_C57BL6NJ_G0032220.1 mouse_genomes_project 7 18233518 18242831 + MGP_C57BL6NJ_P0082487 Ppp1r13l protein_coding protein_coding MGP_C57BL6NJ_T0082488.1 MGP_C57BL6NJ_G0032220.1 mouse_genomes_project 7 18234088 18251430 + MGP_C57BL6NJ_P0082488 Ppp1r13l protein_coding protein_coding MGP_C57BL6NJ_T0082489.1 MGP_C57BL6NJ_G0032220.1 mouse_genomes_project 7 18241395 18242809 + MGP_C57BL6NJ_P0082489 Ppp1r13l protein_coding protein_coding MGP_C57BL6NJ_T0103404.1 MGP_C57BL6NJ_G0041196.1 mouse_genomes_project 7 34285425 34287208 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085856.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604532 108665110 + Clpb protein_coding retained_intron MGP_C57BL6NJ_T0085857.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604532 108733467 + MGP_C57BL6NJ_P0085857 Clpb protein_coding protein_coding MGP_C57BL6NJ_T0085858.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604604 108731109 + MGP_C57BL6NJ_P0085858 Clpb protein_coding protein_coding MGP_C57BL6NJ_T0085859.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604656 108631134 + Clpb protein_coding retained_intron MGP_C57BL6NJ_T0085860.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604674 108648732 + MGP_C57BL6NJ_P0085860 Clpb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085861.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108604675 108730189 + Clpb protein_coding retained_intron MGP_C57BL6NJ_T0085862.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108624300 108707017 + MGP_C57BL6NJ_P0085862 Clpb protein_coding protein_coding MGP_C57BL6NJ_T0085863.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108625381 108693570 + MGP_C57BL6NJ_P0085863 Clpb protein_coding protein_coding MGP_C57BL6NJ_T0085864.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108706900 108712713 + Clpb protein_coding processed_transcript MGP_C57BL6NJ_T0085865.1 MGP_C57BL6NJ_G0033070.1 mouse_genomes_project 7 108706927 108728934 + Clpb protein_coding processed_transcript MGP_C57BL6NJ_T0098892.1 MGP_C57BL6NJ_G0036956.1 mouse_genomes_project 7 108794819 108795432 + pseudogene pseudogene MGP_C57BL6NJ_T0086332.1 MGP_C57BL6NJ_G0033327.1 mouse_genomes_project 7 116964031 116965033 - MGP_C57BL6NJ_P0086332 Olfr518 protein_coding protein_coding MGP_C57BL6NJ_T0086113.1 MGP_C57BL6NJ_G0033204.1 mouse_genomes_project 7 112004609 112005600 + MGP_C57BL6NJ_P0086113 Olfr656 protein_coding protein_coding MGP_C57BL6NJ_T0002426.1 MGP_C57BL6NJ_G0002315.1 mouse_genomes_project 7 85824571 85825116 - TEC TEC MGP_C57BL6NJ_T0087307.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907056 136910117 - Zfp688 protein_coding retained_intron MGP_C57BL6NJ_T0087308.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907056 136910129 - MGP_C57BL6NJ_P0087308 Zfp688 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087309.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907056 136910124 - MGP_C57BL6NJ_P0087309 Zfp688 protein_coding protein_coding MGP_C57BL6NJ_T0087310.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907058 136910158 - Zfp688 protein_coding retained_intron MGP_C57BL6NJ_T0087311.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907435 136909940 - MGP_C57BL6NJ_P0087311 Zfp688 protein_coding protein_coding MGP_C57BL6NJ_T0087312.1 MGP_C57BL6NJ_G0033530.1 mouse_genomes_project 7 136907680 136910057 - MGP_C57BL6NJ_P0087312 Zfp688 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087427.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137349311 137379791 + Stx4a protein_coding processed_transcript MGP_C57BL6NJ_T0087428.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137373192 137379791 + MGP_C57BL6NJ_P0087428 Stx4a protein_coding protein_coding MGP_C57BL6NJ_T0087429.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137373396 137379772 + MGP_C57BL6NJ_P0087429 Stx4a protein_coding protein_coding MGP_C57BL6NJ_T0087430.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137373398 137375373 + Stx4a protein_coding retained_intron MGP_C57BL6NJ_T0087431.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137373406 137378047 + MGP_C57BL6NJ_P0087431 Stx4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087432.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137374113 137378015 + Stx4a protein_coding retained_intron MGP_C57BL6NJ_T0087433.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137375026 137379443 + Stx4a protein_coding retained_intron MGP_C57BL6NJ_T0087434.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137377212 137379264 + Stx4a protein_coding retained_intron MGP_C57BL6NJ_T0087435.1 MGP_C57BL6NJ_G0033550.1 mouse_genomes_project 7 137379156 137379791 + Stx4a protein_coding retained_intron MGP_C57BL6NJ_T0101891.1 MGP_C57BL6NJ_G0039937.1 mouse_genomes_project 7 118187894 118188027 + Gm25636 snoRNA snoRNA MGP_C57BL6NJ_T0088251.1 MGP_C57BL6NJ_G0033748.1 mouse_genomes_project 7 152973018 152984534 - MGP_C57BL6NJ_P0088251 Ctsd protein_coding protein_coding MGP_C57BL6NJ_T0088252.1 MGP_C57BL6NJ_G0033748.1 mouse_genomes_project 7 152977776 152989905 - MGP_C57BL6NJ_P0088252 Ctsd protein_coding protein_coding MGP_C57BL6NJ_T0088253.1 MGP_C57BL6NJ_G0033748.1 mouse_genomes_project 7 152977795 152989686 - MGP_C57BL6NJ_P0088253 Ctsd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088254.1 MGP_C57BL6NJ_G0033748.1 mouse_genomes_project 7 152985060 152989686 - Ctsd protein_coding retained_intron MGP_C57BL6NJ_T0086142.1 MGP_C57BL6NJ_G0033231.1 mouse_genomes_project 7 112701732 112703252 - MGP_C57BL6NJ_P0086142 Olfr684 protein_coding protein_coding MGP_C57BL6NJ_T0103399.1 MGP_C57BL6NJ_G0041191.1 mouse_genomes_project 7 32219286 32221432 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018858.1 MGP_C57BL6NJ_G0016071.1 mouse_genomes_project 7 80118922 80128712 + 1500012K07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018859.1 MGP_C57BL6NJ_G0016071.1 mouse_genomes_project 7 80118928 80139059 + 1500012K07Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018860.1 MGP_C57BL6NJ_G0016071.1 mouse_genomes_project 7 80118928 80140641 + 1500012K07Rik processed_transcript antisense MGP_C57BL6NJ_T0085007.1 MGP_C57BL6NJ_G0032861.1 mouse_genomes_project 7 83779401 83788344 - MGP_C57BL6NJ_P0085007 Mrpl46 protein_coding protein_coding MGP_C57BL6NJ_T0085008.1 MGP_C57BL6NJ_G0032861.1 mouse_genomes_project 7 83779765 83788786 - Mrpl46 protein_coding processed_transcript MGP_C57BL6NJ_T0103445.1 MGP_C57BL6NJ_G0041237.1 mouse_genomes_project 7 46359912 46362172 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085401.1 MGP_C57BL6NJ_G0032945.1 mouse_genomes_project 7 90623607 90642940 - MGP_C57BL6NJ_P0085401 Vmn2r66 protein_coding protein_coding MGP_C57BL6NJ_T0086160.1 MGP_C57BL6NJ_G0033242.1 mouse_genomes_project 7 112965455 112969626 + MGP_C57BL6NJ_P0086160 Cnga4 protein_coding protein_coding MGP_C57BL6NJ_T0087901.1 MGP_C57BL6NJ_G0033652.1 mouse_genomes_project 7 150416521 150453672 - MGP_C57BL6NJ_P0087901 Tubgcp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083385.1 MGP_C57BL6NJ_G0032459.1 mouse_genomes_project 7 30209152 30219292 + MGP_C57BL6NJ_P0083385 protein_coding protein_coding MGP_C57BL6NJ_T0086734.1 MGP_C57BL6NJ_G0033419.1 mouse_genomes_project 7 129025209 129035061 + MGP_C57BL6NJ_P0086734 Anks4b protein_coding protein_coding MGP_C57BL6NJ_T0083965.1 MGP_C57BL6NJ_G0032597.1 mouse_genomes_project 7 45644738 45645915 + MGP_C57BL6NJ_P0083965 Nkg7 protein_coding protein_coding MGP_C57BL6NJ_T0083966.1 MGP_C57BL6NJ_G0032597.1 mouse_genomes_project 7 45644795 45645912 + MGP_C57BL6NJ_P0083966 Nkg7 protein_coding protein_coding MGP_C57BL6NJ_T0083967.1 MGP_C57BL6NJ_G0032597.1 mouse_genomes_project 7 45645169 45645915 + Nkg7 protein_coding retained_intron MGP_C57BL6NJ_T0084278.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47724486 47741879 + MGP_C57BL6NJ_P0084278 Tead2 protein_coding protein_coding MGP_C57BL6NJ_T0084279.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47724524 47729658 + Tead2 protein_coding retained_intron MGP_C57BL6NJ_T0084280.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47724543 47726940 + Tead2 protein_coding retained_intron MGP_C57BL6NJ_T0084281.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47724556 47734531 + MGP_C57BL6NJ_P0084281 Tead2 protein_coding protein_coding MGP_C57BL6NJ_T0084282.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47724585 47741879 + MGP_C57BL6NJ_P0084282 Tead2 protein_coding protein_coding MGP_C57BL6NJ_T0084283.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47725406 47727903 + MGP_C57BL6NJ_P0084283 Tead2 protein_coding protein_coding MGP_C57BL6NJ_T0084284.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47725944 47729711 + Tead2 protein_coding retained_intron MGP_C57BL6NJ_T0084285.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47725944 47741895 + MGP_C57BL6NJ_P0084285 Tead2 protein_coding protein_coding MGP_C57BL6NJ_T0084286.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47726772 47732480 + Tead2 protein_coding processed_transcript MGP_C57BL6NJ_T0084287.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47728641 47729439 + Tead2 protein_coding retained_intron MGP_C57BL6NJ_T0084288.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47729179 47729934 + Tead2 protein_coding processed_transcript MGP_C57BL6NJ_T0084289.1 MGP_C57BL6NJ_G0032693.1 mouse_genomes_project 7 47740407 47741346 + Tead2 protein_coding processed_transcript MGP_C57BL6NJ_T0103527.1 MGP_C57BL6NJ_G0041319.1 mouse_genomes_project 7 110240107 110240960 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082057.1 MGP_C57BL6NJ_G0032080.1 mouse_genomes_project 7 9829181 9830156 - MGP_C57BL6NJ_P0082057 Vmn1r76 protein_coding protein_coding MGP_C57BL6NJ_T0086302.1 MGP_C57BL6NJ_G0033297.1 mouse_genomes_project 7 115946321 115947254 + MGP_C57BL6NJ_P0086302 Olfr474 protein_coding protein_coding MGP_C57BL6NJ_T0082169.1 MGP_C57BL6NJ_G0032117.1 mouse_genomes_project 7 11450008 11476832 + MGP_C57BL6NJ_P0082169 Bsph1 protein_coding protein_coding MGP_C57BL6NJ_T0082170.1 MGP_C57BL6NJ_G0032117.1 mouse_genomes_project 7 11450023 11476762 + MGP_C57BL6NJ_P0082170 Bsph1 protein_coding protein_coding MGP_C57BL6NJ_T0018835.1 MGP_C57BL6NJ_G0016065.1 mouse_genomes_project 7 59416536 59429127 - Gm34121 processed_transcript lincRNA MGP_C57BL6NJ_T0018836.1 MGP_C57BL6NJ_G0016065.1 mouse_genomes_project 7 59425531 59429092 - Gm34121 processed_transcript retained_intron MGP_C57BL6NJ_T0082081.1 MGP_C57BL6NJ_G0032095.1 mouse_genomes_project 7 10751039 10766866 + MGP_C57BL6NJ_P0082081 Zfp110 protein_coding protein_coding MGP_C57BL6NJ_T0082082.1 MGP_C57BL6NJ_G0032095.1 mouse_genomes_project 7 10751094 10752383 + Zfp110 protein_coding processed_transcript MGP_C57BL6NJ_T0082083.1 MGP_C57BL6NJ_G0032095.1 mouse_genomes_project 7 10751315 10752975 + Zfp110 protein_coding retained_intron MGP_C57BL6NJ_T0082084.1 MGP_C57BL6NJ_G0032095.1 mouse_genomes_project 7 10751761 10766214 + MGP_C57BL6NJ_P0082084 Zfp110 protein_coding protein_coding MGP_C57BL6NJ_T0082085.1 MGP_C57BL6NJ_G0032095.1 mouse_genomes_project 7 10752579 10761194 + Zfp110 protein_coding processed_transcript MGP_C57BL6NJ_T0087579.1 MGP_C57BL6NJ_G0033579.1 mouse_genomes_project 7 138317446 138366177 - MGP_C57BL6NJ_P0087579 Mcmbp protein_coding protein_coding MGP_C57BL6NJ_T0087580.1 MGP_C57BL6NJ_G0033579.1 mouse_genomes_project 7 138318756 138366168 - MGP_C57BL6NJ_P0087580 Mcmbp protein_coding protein_coding MGP_C57BL6NJ_T0087581.1 MGP_C57BL6NJ_G0033579.1 mouse_genomes_project 7 138319176 138320209 - Mcmbp protein_coding processed_transcript MGP_C57BL6NJ_T0087582.1 MGP_C57BL6NJ_G0033579.1 mouse_genomes_project 7 138320312 138323810 - Mcmbp protein_coding retained_intron MGP_C57BL6NJ_T0087583.1 MGP_C57BL6NJ_G0033579.1 mouse_genomes_project 7 138333525 138335773 - Mcmbp protein_coding retained_intron MGP_C57BL6NJ_T0009152.1 MGP_C57BL6NJ_G0007377.1 mouse_genomes_project 7 94206433 94211136 - Gm26522 lincRNA lincRNA MGP_C57BL6NJ_T0082185.1 MGP_C57BL6NJ_G0032128.1 mouse_genomes_project 7 12693563 12696578 - MGP_C57BL6NJ_P0082185 Vmn1r90 protein_coding protein_coding MGP_C57BL6NJ_T0087953.1 MGP_C57BL6NJ_G0033677.1 mouse_genomes_project 7 151014290 151062668 + MGP_C57BL6NJ_P0087953 protein_coding protein_coding MGP_C57BL6NJ_T0016361.1 MGP_C57BL6NJ_G0014406.1 mouse_genomes_project 7 131179024 131179438 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101866.1 MGP_C57BL6NJ_G0039912.1 mouse_genomes_project 7 62909170 62909249 - snoRNA snoRNA MGP_C57BL6NJ_T0085742.1 MGP_C57BL6NJ_G0033050.1 mouse_genomes_project 7 107124028 107170607 - MGP_C57BL6NJ_P0085742 Ppme1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085743.1 MGP_C57BL6NJ_G0033050.1 mouse_genomes_project 7 107124034 107170680 - MGP_C57BL6NJ_P0085743 Ppme1 protein_coding protein_coding MGP_C57BL6NJ_T0082602.1 MGP_C57BL6NJ_G0032255.1 mouse_genomes_project 7 22435959 22436874 - MGP_C57BL6NJ_P0082602 protein_coding protein_coding MGP_C57BL6NJ_T0099143.1 MGP_C57BL6NJ_G0037207.1 mouse_genomes_project 7 3816600 3816708 + n-R5s150 rRNA rRNA MGP_C57BL6NJ_T0011089.1 MGP_C57BL6NJ_G0009174.1 mouse_genomes_project 7 4115814 4115898 + Mir3099 miRNA miRNA MGP_C57BL6NJ_T0083901.1 MGP_C57BL6NJ_G0032571.1 mouse_genomes_project 7 43155264 43181771 - MGP_C57BL6NJ_P0083901 AI987944 protein_coding protein_coding MGP_C57BL6NJ_T0083902.1 MGP_C57BL6NJ_G0032571.1 mouse_genomes_project 7 43157343 43181890 - MGP_C57BL6NJ_P0083902 AI987944 protein_coding protein_coding MGP_C57BL6NJ_T0103534.1 MGP_C57BL6NJ_G0041326.1 mouse_genomes_project 7 111052997 111053126 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083395.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245581 30251169 + MGP_C57BL6NJ_P0083395 Alkbh6 protein_coding protein_coding MGP_C57BL6NJ_T0083396.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245641 30251019 + MGP_C57BL6NJ_P0083396 Alkbh6 protein_coding protein_coding MGP_C57BL6NJ_T0083397.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245641 30251026 + MGP_C57BL6NJ_P0083397 Alkbh6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083398.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245652 30251168 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083399.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245659 30249373 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083400.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245673 30249285 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083401.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245677 30247915 + Alkbh6 protein_coding processed_transcript MGP_C57BL6NJ_T0083402.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30245718 30249561 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083403.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30246635 30249526 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083404.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30247991 30249228 + Alkbh6 protein_coding retained_intron MGP_C57BL6NJ_T0083405.1 MGP_C57BL6NJ_G0032462.1 mouse_genomes_project 7 30249539 30251169 + Alkbh6 protein_coding processed_transcript MGP_C57BL6NJ_T0081956.1 MGP_C57BL6NJ_G0032024.1 mouse_genomes_project 7 2092080 2096419 + MGP_C57BL6NJ_P0081956 protein_coding protein_coding MGP_C57BL6NJ_T0083003.1 MGP_C57BL6NJ_G0032361.1 mouse_genomes_project 7 26988568 26992165 + MGP_C57BL6NJ_P0083003 Sertad3 protein_coding protein_coding MGP_C57BL6NJ_T0016176.1 MGP_C57BL6NJ_G0014221.1 mouse_genomes_project 7 25141409 25141697 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016319.1 MGP_C57BL6NJ_G0014364.1 mouse_genomes_project 7 94495504 94496484 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0084959.1 MGP_C57BL6NJ_G0032854.1 mouse_genomes_project 7 78636541 78712406 - MGP_C57BL6NJ_P0084959 St8sia2 protein_coding protein_coding MGP_C57BL6NJ_T0084960.1 MGP_C57BL6NJ_G0032854.1 mouse_genomes_project 7 78658284 78712422 - MGP_C57BL6NJ_P0084960 St8sia2 protein_coding protein_coding MGP_C57BL6NJ_T0085311.1 MGP_C57BL6NJ_G0032914.1 mouse_genomes_project 7 86860788 86899705 - MGP_C57BL6NJ_P0085311 Fsd2 protein_coding protein_coding MGP_C57BL6NJ_T0081973.1 MGP_C57BL6NJ_G0032034.1 mouse_genomes_project 7 2982501 2985104 - MGP_C57BL6NJ_P0081973 protein_coding protein_coding MGP_C57BL6NJ_T0084703.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59627087 59929725 + MGP_C57BL6NJ_P0084703 Oca2 protein_coding protein_coding MGP_C57BL6NJ_T0084704.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59627088 59642228 + MGP_C57BL6NJ_P0084704 Oca2 protein_coding protein_coding MGP_C57BL6NJ_T0084705.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59627104 59929472 + MGP_C57BL6NJ_P0084705 Oca2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084706.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59627108 59668203 + MGP_C57BL6NJ_P0084706 Oca2 protein_coding protein_coding MGP_C57BL6NJ_T0084707.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59627135 59929720 + MGP_C57BL6NJ_P0084707 Oca2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084708.1 MGP_C57BL6NJ_G0032801.1 mouse_genomes_project 7 59694544 59713345 + Oca2 protein_coding processed_transcript MGP_C57BL6NJ_T0082904.1 MGP_C57BL6NJ_G0032335.1 mouse_genomes_project 7 26005860 26031448 - MGP_C57BL6NJ_P0082904 Vmn1r185 protein_coding protein_coding MGP_C57BL6NJ_T0103536.1 MGP_C57BL6NJ_G0041328.1 mouse_genomes_project 7 111231921 111232827 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083684.1 MGP_C57BL6NJ_G0032520.1 mouse_genomes_project 7 32228858 33513908 + MGP_C57BL6NJ_P0083684 protein_coding protein_coding MGP_C57BL6NJ_T0087213.1 MGP_C57BL6NJ_G0033507.1 mouse_genomes_project 7 136418323 136434992 - MGP_C57BL6NJ_P0087213 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009228.1 MGP_C57BL6NJ_G0007425.1 mouse_genomes_project 7 138217818 138220234 - Gm45121 lincRNA lincRNA MGP_C57BL6NJ_T0103430.1 MGP_C57BL6NJ_G0041222.1 mouse_genomes_project 7 43592924 43593164 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011081.1 MGP_C57BL6NJ_G0009166.1 mouse_genomes_project 7 104859 104939 + Mir293 miRNA miRNA MGP_C57BL6NJ_T0016214.1 MGP_C57BL6NJ_G0014259.1 mouse_genomes_project 7 34622497 34622965 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011154.1 MGP_C57BL6NJ_G0009239.1 mouse_genomes_project 7 65890375 65890463 - Mir344i miRNA miRNA MGP_C57BL6NJ_T0083705.1 MGP_C57BL6NJ_G0032535.1 mouse_genomes_project 7 35068655 35101371 - MGP_C57BL6NJ_P0083705 Wtip protein_coding protein_coding MGP_C57BL6NJ_T0083706.1 MGP_C57BL6NJ_G0032535.1 mouse_genomes_project 7 35069277 35094121 - Wtip protein_coding processed_transcript MGP_C57BL6NJ_T0083707.1 MGP_C57BL6NJ_G0032535.1 mouse_genomes_project 7 35069328 35081354 - Wtip protein_coding retained_intron MGP_C57BL6NJ_T0083708.1 MGP_C57BL6NJ_G0032535.1 mouse_genomes_project 7 35069338 35100921 - MGP_C57BL6NJ_P0083708 Wtip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087351.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137079842 137084967 + Phkg2 protein_coding retained_intron MGP_C57BL6NJ_T0087352.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137079871 137089681 + MGP_C57BL6NJ_P0087352 Phkg2 protein_coding protein_coding MGP_C57BL6NJ_T0087353.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137079925 137089681 + MGP_C57BL6NJ_P0087353 Phkg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087354.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137079984 137088774 + Phkg2 protein_coding retained_intron MGP_C57BL6NJ_T0087355.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137080196 137088823 + MGP_C57BL6NJ_P0087355 Phkg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087356.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137080196 137088823 + MGP_C57BL6NJ_P0087356 Phkg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087357.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137080196 137089683 + MGP_C57BL6NJ_P0087357 Phkg2 protein_coding protein_coding MGP_C57BL6NJ_T0087358.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137084320 137089676 + MGP_C57BL6NJ_P0087358 Phkg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087359.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137085655 137088795 + Phkg2 protein_coding retained_intron MGP_C57BL6NJ_T0087360.1 MGP_C57BL6NJ_G0033537.1 mouse_genomes_project 7 137088471 137089062 + Phkg2 protein_coding retained_intron MGP_C57BL6NJ_T0009025.1 MGP_C57BL6NJ_G0007292.1 mouse_genomes_project 7 38436991 38440363 - Gm28076 lincRNA lincRNA MGP_C57BL6NJ_T0083897.1 MGP_C57BL6NJ_G0032570.1 mouse_genomes_project 7 42544585 42576837 + MGP_C57BL6NJ_P0083897 Vstm2b protein_coding protein_coding MGP_C57BL6NJ_T0083898.1 MGP_C57BL6NJ_G0032570.1 mouse_genomes_project 7 42545535 42576211 + MGP_C57BL6NJ_P0083898 Vstm2b protein_coding protein_coding MGP_C57BL6NJ_T0083899.1 MGP_C57BL6NJ_G0032570.1 mouse_genomes_project 7 42545589 42549046 + MGP_C57BL6NJ_P0083899 Vstm2b protein_coding protein_coding MGP_C57BL6NJ_T0083900.1 MGP_C57BL6NJ_G0032570.1 mouse_genomes_project 7 42546386 42549059 + MGP_C57BL6NJ_P0083900 Vstm2b protein_coding protein_coding MGP_C57BL6NJ_T0082382.1 MGP_C57BL6NJ_G0032191.1 mouse_genomes_project 7 17619756 17628229 - MGP_C57BL6NJ_P0082382 Psg17 protein_coding protein_coding MGP_C57BL6NJ_T0016226.1 MGP_C57BL6NJ_G0014271.1 mouse_genomes_project 7 41139328 41139922 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008990.1 MGP_C57BL6NJ_G0007260.1 mouse_genomes_project 7 18155994 18158505 - Gm26802 lincRNA lincRNA MGP_C57BL6NJ_T0085313.1 MGP_C57BL6NJ_G0032916.1 mouse_genomes_project 7 86950013 87059784 - MGP_C57BL6NJ_P0085313 Homer2 protein_coding protein_coding MGP_C57BL6NJ_T0086651.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127495697 127601555 + MGP_C57BL6NJ_P0086651 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086652.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496146 127600080 + MGP_C57BL6NJ_P0086652 9030624J02Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0086653.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496203 127539439 + 9030624J02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0086654.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496218 127517474 + MGP_C57BL6NJ_P0086654 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086655.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496218 127600068 + MGP_C57BL6NJ_P0086655 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086656.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496218 127600078 + MGP_C57BL6NJ_P0086656 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086657.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127496220 127503476 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086658.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127503707 127521870 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086659.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127508161 127509718 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086660.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127519451 127600076 + MGP_C57BL6NJ_P0086660 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086661.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127550360 127584815 + MGP_C57BL6NJ_P0086661 9030624J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0086662.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127561144 127592590 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086663.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127563772 127570476 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086664.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127578452 127585039 + 9030624J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0086665.1 MGP_C57BL6NJ_G0033398.1 mouse_genomes_project 7 127583189 127599888 + 9030624J02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0085615.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104685062 104757155 - MGP_C57BL6NJ_P0085615 Myo7a protein_coding protein_coding MGP_C57BL6NJ_T0085616.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104685070 104758946 - MGP_C57BL6NJ_P0085616 Myo7a protein_coding protein_coding MGP_C57BL6NJ_T0085617.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104685073 104703358 - MGP_C57BL6NJ_P0085617 Myo7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085618.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104685411 104746699 - MGP_C57BL6NJ_P0085618 Myo7a protein_coding protein_coding MGP_C57BL6NJ_T0085619.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104696623 104699183 - Myo7a protein_coding retained_intron MGP_C57BL6NJ_T0085620.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104716511 104720004 - Myo7a protein_coding processed_transcript MGP_C57BL6NJ_T0085621.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104735092 104750113 - Myo7a protein_coding processed_transcript MGP_C57BL6NJ_T0085622.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104735667 104740812 - Myo7a protein_coding processed_transcript MGP_C57BL6NJ_T0085623.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104735707 104740808 - Myo7a protein_coding processed_transcript MGP_C57BL6NJ_T0085624.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104735716 104758915 - MGP_C57BL6NJ_P0085624 Myo7a protein_coding protein_coding MGP_C57BL6NJ_T0085625.1 MGP_C57BL6NJ_G0033016.1 mouse_genomes_project 7 104746182 104758914 - Myo7a protein_coding processed_transcript MGP_C57BL6NJ_T0011957.1 MGP_C57BL6NJ_G0010042.1 mouse_genomes_project 7 110363397 110363718 + Gm23973 misc_RNA misc_RNA MGP_C57BL6NJ_T0086640.1 MGP_C57BL6NJ_G0033395.1 mouse_genomes_project 7 127336901 127429349 + MGP_C57BL6NJ_P0086640 Tmc5 protein_coding protein_coding MGP_C57BL6NJ_T0086641.1 MGP_C57BL6NJ_G0033395.1 mouse_genomes_project 7 127336901 127429350 + MGP_C57BL6NJ_P0086641 Tmc5 protein_coding protein_coding MGP_C57BL6NJ_T0086642.1 MGP_C57BL6NJ_G0033395.1 mouse_genomes_project 7 127342804 127429350 + MGP_C57BL6NJ_P0086642 Tmc5 protein_coding protein_coding MGP_C57BL6NJ_T0086643.1 MGP_C57BL6NJ_G0033395.1 mouse_genomes_project 7 127382729 127429350 + MGP_C57BL6NJ_P0086643 Tmc5 protein_coding protein_coding MGP_C57BL6NJ_T0084474.1 MGP_C57BL6NJ_G0032738.1 mouse_genomes_project 7 48510698 48515754 - MGP_C57BL6NJ_P0084474 Emp3 protein_coding protein_coding MGP_C57BL6NJ_T0084475.1 MGP_C57BL6NJ_G0032738.1 mouse_genomes_project 7 48510698 48516331 - MGP_C57BL6NJ_P0084475 Emp3 protein_coding protein_coding MGP_C57BL6NJ_T0011090.1 MGP_C57BL6NJ_G0009175.1 mouse_genomes_project 7 4665066 4665122 + Mir5620 miRNA miRNA MGP_C57BL6NJ_T0085440.1 MGP_C57BL6NJ_G0032974.1 mouse_genomes_project 7 93504437 94049760 + MGP_C57BL6NJ_P0085440 Grm5 protein_coding protein_coding MGP_C57BL6NJ_T0085441.1 MGP_C57BL6NJ_G0032974.1 mouse_genomes_project 7 93504437 94049760 + MGP_C57BL6NJ_P0085441 Grm5 protein_coding protein_coding MGP_C57BL6NJ_T0085442.1 MGP_C57BL6NJ_G0032974.1 mouse_genomes_project 7 93718312 93724084 + Grm5 protein_coding processed_transcript MGP_C57BL6NJ_T0085443.1 MGP_C57BL6NJ_G0032974.1 mouse_genomes_project 7 93718312 94053798 + MGP_C57BL6NJ_P0085443 Grm5 protein_coding protein_coding MGP_C57BL6NJ_T0085444.1 MGP_C57BL6NJ_G0032974.1 mouse_genomes_project 7 93718312 94050545 + MGP_C57BL6NJ_P0085444 Grm5 protein_coding protein_coding MGP_C57BL6NJ_T0082606.1 MGP_C57BL6NJ_G0032258.1 mouse_genomes_project 7 22881825 22882740 + MGP_C57BL6NJ_P0082606 Vmn1r178 protein_coding protein_coding MGP_C57BL6NJ_T0002371.1 MGP_C57BL6NJ_G0002261.1 mouse_genomes_project 7 58232671 58234209 + TEC TEC MGP_C57BL6NJ_T0084158.1 MGP_C57BL6NJ_G0032653.1 mouse_genomes_project 7 47009551 47021946 + Napsa protein_coding retained_intron MGP_C57BL6NJ_T0084159.1 MGP_C57BL6NJ_G0032653.1 mouse_genomes_project 7 47009551 47025617 + MGP_C57BL6NJ_P0084159 Napsa protein_coding protein_coding MGP_C57BL6NJ_T0082601.1 MGP_C57BL6NJ_G0032254.1 mouse_genomes_project 7 22435693 22437286 - MGP_C57BL6NJ_P0082601 protein_coding protein_coding MGP_C57BL6NJ_T0084184.1 MGP_C57BL6NJ_G0032661.1 mouse_genomes_project 7 47281742 47285145 - MGP_C57BL6NJ_P0084184 Atf5 protein_coding protein_coding MGP_C57BL6NJ_T0084185.1 MGP_C57BL6NJ_G0032661.1 mouse_genomes_project 7 47281743 47286086 - MGP_C57BL6NJ_P0084185 Atf5 protein_coding protein_coding MGP_C57BL6NJ_T0005358.1 MGP_C57BL6NJ_G0004556.1 mouse_genomes_project 7 35663279 35674168 + Gm12781 antisense antisense MGP_C57BL6NJ_T0005464.1 MGP_C57BL6NJ_G0004631.1 mouse_genomes_project 7 142037905 142039036 + Gm15677 antisense antisense MGP_C57BL6NJ_T0086616.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126796052 126808543 - MGP_C57BL6NJ_P0086616 Arl6ip1 protein_coding protein_coding MGP_C57BL6NJ_T0086617.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126797413 126807991 - Arl6ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0086618.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126797461 126808457 - MGP_C57BL6NJ_P0086618 Arl6ip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086619.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126798361 126808455 - MGP_C57BL6NJ_P0086619 Arl6ip1 protein_coding protein_coding MGP_C57BL6NJ_T0086620.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126798388 126808441 - MGP_C57BL6NJ_P0086620 Arl6ip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086621.1 MGP_C57BL6NJ_G0033389.1 mouse_genomes_project 7 126805180 126808453 - Arl6ip1 protein_coding retained_intron MGP_C57BL6NJ_T0016244.1 MGP_C57BL6NJ_G0014289.1 mouse_genomes_project 7 43289803 43293759 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009208.1 MGP_C57BL6NJ_G0007414.1 mouse_genomes_project 7 135700089 135703315 - Gm45142 lincRNA lincRNA MGP_C57BL6NJ_T0009209.1 MGP_C57BL6NJ_G0007414.1 mouse_genomes_project 7 135702340 135703337 - Gm45142 lincRNA lincRNA MGP_C57BL6NJ_T0087951.1 MGP_C57BL6NJ_G0033675.1 mouse_genomes_project 7 150937569 150960432 - MGP_C57BL6NJ_P0087951 Olfr536 protein_coding protein_coding MGP_C57BL6NJ_T0081925.1 MGP_C57BL6NJ_G0032008.1 mouse_genomes_project 7 1830285 1842311 - MGP_C57BL6NJ_P0081925 Shisa7 protein_coding protein_coding MGP_C57BL6NJ_T0081926.1 MGP_C57BL6NJ_G0032008.1 mouse_genomes_project 7 1830286 1853413 - MGP_C57BL6NJ_P0081926 Shisa7 protein_coding protein_coding MGP_C57BL6NJ_T0081927.1 MGP_C57BL6NJ_G0032008.1 mouse_genomes_project 7 1832760 1853413 - MGP_C57BL6NJ_P0081927 Shisa7 protein_coding protein_coding MGP_C57BL6NJ_T0081928.1 MGP_C57BL6NJ_G0032008.1 mouse_genomes_project 7 1834910 1835861 - Shisa7 protein_coding retained_intron MGP_C57BL6NJ_T0081929.1 MGP_C57BL6NJ_G0032008.1 mouse_genomes_project 7 1836124 1840652 - Shisa7 protein_coding retained_intron MGP_C57BL6NJ_T0011944.1 MGP_C57BL6NJ_G0010029.1 mouse_genomes_project 7 14332548 14332796 + Gm24576 misc_RNA misc_RNA MGP_C57BL6NJ_T0103333.1 MGP_C57BL6NJ_G0041126.1 mouse_genomes_project 7 9865065 9865353 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086064.1 MGP_C57BL6NJ_G0033175.1 mouse_genomes_project 7 111258848 111259799 - MGP_C57BL6NJ_P0086064 Olfr639 protein_coding protein_coding MGP_C57BL6NJ_T0016162.1 MGP_C57BL6NJ_G0014207.1 mouse_genomes_project 7 16882034 16887070 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087689.1 MGP_C57BL6NJ_G0033600.1 mouse_genomes_project 7 141381022 141383081 + MGP_C57BL6NJ_P0087689 Hmx3 protein_coding protein_coding MGP_C57BL6NJ_T0084010.1 MGP_C57BL6NJ_G0032610.1 mouse_genomes_project 7 45900481 45906764 + MGP_C57BL6NJ_P0084010 Ctu1 protein_coding protein_coding MGP_C57BL6NJ_T0102549.1 MGP_C57BL6NJ_G0040391.1 mouse_genomes_project 7 692744 765669 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0082842.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24978793 24987662 + MGP_C57BL6NJ_P0082842 Exosc5 protein_coding protein_coding MGP_C57BL6NJ_T0082843.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24978820 24990985 + MGP_C57BL6NJ_P0082843 Exosc5 protein_coding protein_coding MGP_C57BL6NJ_T0082844.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24978841 24987662 + Exosc5 protein_coding retained_intron MGP_C57BL6NJ_T0082845.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24978841 24985936 + MGP_C57BL6NJ_P0082845 Exosc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082846.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24978847 24984031 + MGP_C57BL6NJ_P0082846 Exosc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082847.1 MGP_C57BL6NJ_G0032321.1 mouse_genomes_project 7 24984016 24986404 + Exosc5 protein_coding retained_intron MGP_C57BL6NJ_T0011167.1 MGP_C57BL6NJ_G0009252.1 mouse_genomes_project 7 102833528 102833627 + Mir6394 miRNA miRNA MGP_C57BL6NJ_T0011117.1 MGP_C57BL6NJ_G0009202.1 mouse_genomes_project 7 37670895 37670985 + Gm25247 miRNA miRNA MGP_C57BL6NJ_T0084431.1 MGP_C57BL6NJ_G0032728.1 mouse_genomes_project 7 48285873 48286580 - MGP_C57BL6NJ_P0084431 Spaca4 protein_coding protein_coding MGP_C57BL6NJ_T0016343.1 MGP_C57BL6NJ_G0014388.1 mouse_genomes_project 7 111028287 111028551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103325.1 MGP_C57BL6NJ_G0041118.1 mouse_genomes_project 7 8239090 8239969 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083069.1 MGP_C57BL6NJ_G0032379.1 mouse_genomes_project 7 27683754 27744882 + MGP_C57BL6NJ_P0083069 Fcgbp protein_coding protein_coding MGP_C57BL6NJ_T0083070.1 MGP_C57BL6NJ_G0032379.1 mouse_genomes_project 7 27683754 27744880 + MGP_C57BL6NJ_P0083070 Fcgbp protein_coding protein_coding MGP_C57BL6NJ_T0083071.1 MGP_C57BL6NJ_G0032379.1 mouse_genomes_project 7 27684096 27706225 + Fcgbp protein_coding retained_intron MGP_C57BL6NJ_T0083073.1 MGP_C57BL6NJ_G0032379.1 mouse_genomes_project 7 27737604 27744881 + Fcgbp protein_coding retained_intron MGP_C57BL6NJ_T0083074.1 MGP_C57BL6NJ_G0032379.1 mouse_genomes_project 7 27739391 27744881 + Fcgbp protein_coding processed_transcript MGP_C57BL6NJ_T0088109.1 MGP_C57BL6NJ_G0033720.1 mouse_genomes_project 7 151930207 151942087 + MGP_C57BL6NJ_P0088109 Taldo1 protein_coding protein_coding MGP_C57BL6NJ_T0088110.1 MGP_C57BL6NJ_G0033720.1 mouse_genomes_project 7 151930251 151938242 + Taldo1 protein_coding retained_intron MGP_C57BL6NJ_T0088111.1 MGP_C57BL6NJ_G0033720.1 mouse_genomes_project 7 151939272 151941325 + Taldo1 protein_coding retained_intron MGP_C57BL6NJ_T0088062.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151758883 151794429 + MGP_C57BL6NJ_P0088062 Phrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088063.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151758888 151794313 + MGP_C57BL6NJ_P0088063 Phrf1 protein_coding protein_coding MGP_C57BL6NJ_T0088064.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151764125 151779099 + MGP_C57BL6NJ_P0088064 Phrf1 protein_coding protein_coding MGP_C57BL6NJ_T0088065.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151775280 151794282 + MGP_C57BL6NJ_P0088065 Phrf1 protein_coding protein_coding MGP_C57BL6NJ_T0088066.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151786571 151789756 + Phrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0088067.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151787689 151789516 + Phrf1 protein_coding retained_intron MGP_C57BL6NJ_T0088068.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151787690 151788573 + Phrf1 protein_coding retained_intron MGP_C57BL6NJ_T0088069.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151790876 151794437 + MGP_C57BL6NJ_P0088069 Phrf1 protein_coding protein_coding MGP_C57BL6NJ_T0088070.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151791344 151792274 + Phrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0088071.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151792083 151794434 + MGP_C57BL6NJ_P0088071 Phrf1 protein_coding protein_coding MGP_C57BL6NJ_T0088072.1 MGP_C57BL6NJ_G0033712.1 mouse_genomes_project 7 151793365 151794387 + Phrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0002405.1 MGP_C57BL6NJ_G0002294.1 mouse_genomes_project 7 80521978 80523276 + TEC TEC MGP_C57BL6NJ_T0087333.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137010851 137027828 + Srcap protein_coding retained_intron MGP_C57BL6NJ_T0087334.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137010851 137030975 + MGP_C57BL6NJ_P0087334 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087335.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137010870 137023625 + MGP_C57BL6NJ_P0087335 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087336.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137010895 137026111 + MGP_C57BL6NJ_P0087336 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087337.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137010980 137014282 + Srcap protein_coding processed_transcript MGP_C57BL6NJ_T0087338.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137011169 137014865 + Srcap protein_coding processed_transcript MGP_C57BL6NJ_T0087339.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137011333 137040889 + MGP_C57BL6NJ_P0087339 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087340.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137011860 137038029 + Srcap protein_coding retained_intron MGP_C57BL6NJ_T0087341.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137011860 137038029 + MGP_C57BL6NJ_P0087341 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087342.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137011886 137062962 + MGP_C57BL6NJ_P0087342 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087343.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137014861 137020758 + Srcap protein_coding retained_intron MGP_C57BL6NJ_T0087344.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137015016 137062265 + MGP_C57BL6NJ_P0087344 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087345.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137015016 137062265 + MGP_C57BL6NJ_P0087345 Srcap protein_coding protein_coding MGP_C57BL6NJ_T0087347.1 MGP_C57BL6NJ_G0033534.1 mouse_genomes_project 7 137035412 137037445 + Srcap protein_coding retained_intron MGP_C57BL6NJ_T0087643.1 MGP_C57BL6NJ_G0033587.1 mouse_genomes_project 7 140518580 140583943 + MGP_C57BL6NJ_P0087643 Btbd16 protein_coding protein_coding MGP_C57BL6NJ_T0085915.1 MGP_C57BL6NJ_G0033079.1 mouse_genomes_project 7 108958428 109007224 + MGP_C57BL6NJ_P0085915 Numa1 protein_coding protein_coding MGP_C57BL6NJ_T0085916.1 MGP_C57BL6NJ_G0033079.1 mouse_genomes_project 7 108958785 109007227 + MGP_C57BL6NJ_P0085916 Numa1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0085917.1 MGP_C57BL6NJ_G0033079.1 mouse_genomes_project 7 108991671 109007220 + MGP_C57BL6NJ_P0085917 Numa1 protein_coding protein_coding MGP_C57BL6NJ_T0085738.1 MGP_C57BL6NJ_G0033049.1 mouse_genomes_project 7 107076207 107117671 + MGP_C57BL6NJ_P0085738 P4ha3 protein_coding protein_coding MGP_C57BL6NJ_T0085739.1 MGP_C57BL6NJ_G0033049.1 mouse_genomes_project 7 107076207 107117671 + MGP_C57BL6NJ_P0085739 P4ha3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085740.1 MGP_C57BL6NJ_G0033049.1 mouse_genomes_project 7 107076229 107089364 + P4ha3 protein_coding retained_intron MGP_C57BL6NJ_T0085741.1 MGP_C57BL6NJ_G0033049.1 mouse_genomes_project 7 107084481 107117670 + MGP_C57BL6NJ_P0085741 P4ha3 protein_coding protein_coding MGP_C57BL6NJ_T0087806.1 MGP_C57BL6NJ_G0033629.1 mouse_genomes_project 7 145704492 145858949 + MGP_C57BL6NJ_P0087806 Ptpre protein_coding protein_coding MGP_C57BL6NJ_T0103474.1 MGP_C57BL6NJ_G0041266.1 mouse_genomes_project 7 50705308 50706215 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082207.1 MGP_C57BL6NJ_G0032135.1 mouse_genomes_project 7 14216813 14222386 - MGP_C57BL6NJ_P0082207 Obox6 protein_coding protein_coding MGP_C57BL6NJ_T0009023.1 MGP_C57BL6NJ_G0007290.1 mouse_genomes_project 7 37824840 37829190 + Gm29129 lincRNA lincRNA MGP_C57BL6NJ_T0083972.1 MGP_C57BL6NJ_G0032600.1 mouse_genomes_project 7 45651799 45672682 + MGP_C57BL6NJ_P0083972 Gm45233 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083974.1 MGP_C57BL6NJ_G0032600.1 mouse_genomes_project 7 45651802 45672765 + MGP_C57BL6NJ_P0083974 Gm45233 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098894.1 MGP_C57BL6NJ_G0036958.1 mouse_genomes_project 7 116162981 116163925 - pseudogene pseudogene MGP_C57BL6NJ_T0005405.1 MGP_C57BL6NJ_G0004590.1 mouse_genomes_project 7 85982690 85990450 + Gm44649 antisense antisense MGP_C57BL6NJ_T0005406.1 MGP_C57BL6NJ_G0004590.1 mouse_genomes_project 7 85982713 85984010 + Gm44649 antisense antisense MGP_C57BL6NJ_T0011106.1 MGP_C57BL6NJ_G0009191.1 mouse_genomes_project 7 26682835 26682955 + Mir1191 miRNA miRNA MGP_C57BL6NJ_T0011965.1 MGP_C57BL6NJ_G0010050.1 mouse_genomes_project 7 153910422 153910882 + Gm27395 misc_RNA misc_RNA MGP_C57BL6NJ_T0084921.1 MGP_C57BL6NJ_G0032844.1 mouse_genomes_project 7 71951728 71984890 - MGP_C57BL6NJ_P0084921 Synm protein_coding protein_coding MGP_C57BL6NJ_T0084922.1 MGP_C57BL6NJ_G0032844.1 mouse_genomes_project 7 71951728 71984890 - MGP_C57BL6NJ_P0084922 Synm protein_coding protein_coding MGP_C57BL6NJ_T0084056.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637373 46646566 + MGP_C57BL6NJ_P0084056 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084057.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637399 46646401 + MGP_C57BL6NJ_P0084057 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084058.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637432 46644176 + 2410002F23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084059.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637432 46646498 + MGP_C57BL6NJ_P0084059 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084060.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637432 46650141 + MGP_C57BL6NJ_P0084060 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084061.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637442 46643590 + 2410002F23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084062.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637444 46646379 + MGP_C57BL6NJ_P0084062 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084063.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637445 46645479 + 2410002F23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084064.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637453 46645905 + 2410002F23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084065.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46637463 46645952 + 2410002F23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0084066.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46642654 46646225 + MGP_C57BL6NJ_P0084066 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0084067.1 MGP_C57BL6NJ_G0032638.1 mouse_genomes_project 7 46642865 46650141 + MGP_C57BL6NJ_P0084067 2410002F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0088459.1 MGP_C57BL6NJ_G0033786.1 mouse_genomes_project 7 155692994 155697416 + MGP_C57BL6NJ_P0088459 Fgf15 protein_coding protein_coding MGP_C57BL6NJ_T0099519.1 MGP_C57BL6NJ_G0037571.1 mouse_genomes_project 7 139332742 139358645 + Gm33248 sense_intronic sense_intronic MGP_C57BL6NJ_T0083516.1 MGP_C57BL6NJ_G0032484.1 mouse_genomes_project 7 30588995 30598439 - MGP_C57BL6NJ_P0083516 Cox6b1 protein_coding protein_coding MGP_C57BL6NJ_T0086066.1 MGP_C57BL6NJ_G0033177.1 mouse_genomes_project 7 111279924 111280863 + MGP_C57BL6NJ_P0086066 Olfr641 protein_coding protein_coding MGP_C57BL6NJ_T0086363.1 MGP_C57BL6NJ_G0033337.1 mouse_genomes_project 7 117638787 117739961 - MGP_C57BL6NJ_P0086363 St5 protein_coding protein_coding MGP_C57BL6NJ_T0086364.1 MGP_C57BL6NJ_G0033337.1 mouse_genomes_project 7 117638787 117739961 - MGP_C57BL6NJ_P0086364 St5 protein_coding protein_coding MGP_C57BL6NJ_T0086365.1 MGP_C57BL6NJ_G0033337.1 mouse_genomes_project 7 117638796 117739382 - MGP_C57BL6NJ_P0086365 St5 protein_coding protein_coding MGP_C57BL6NJ_T0086366.1 MGP_C57BL6NJ_G0033337.1 mouse_genomes_project 7 117638796 117739382 - MGP_C57BL6NJ_P0086366 St5 protein_coding protein_coding MGP_C57BL6NJ_T0085674.1 MGP_C57BL6NJ_G0033027.1 mouse_genomes_project 7 105568715 105835671 - MGP_C57BL6NJ_P0085674 Uvrag protein_coding protein_coding MGP_C57BL6NJ_T0081979.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3408990 3421305 + MGP_C57BL6NJ_P0081979 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081980.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3409246 3428980 + MGP_C57BL6NJ_P0081980 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081981.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3409266 3429918 + MGP_C57BL6NJ_P0081981 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081982.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3409277 3428979 + MGP_C57BL6NJ_P0081982 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081983.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3410394 3421177 + MGP_C57BL6NJ_P0081983 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081984.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3410567 3421785 + Zfp444 protein_coding processed_transcript MGP_C57BL6NJ_T0081985.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3410622 3428404 + MGP_C57BL6NJ_P0081985 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081986.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3418809 3426716 + MGP_C57BL6NJ_P0081986 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0081987.1 MGP_C57BL6NJ_G0032039.1 mouse_genomes_project 7 3420929 3426791 + MGP_C57BL6NJ_P0081987 Zfp444 protein_coding protein_coding MGP_C57BL6NJ_T0016327.1 MGP_C57BL6NJ_G0014372.1 mouse_genomes_project 7 102962318 102962790 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018891.1 MGP_C57BL6NJ_G0016089.1 mouse_genomes_project 7 138073657 138092088 + Gm45019 processed_transcript lincRNA MGP_C57BL6NJ_T0018892.1 MGP_C57BL6NJ_G0016089.1 mouse_genomes_project 7 138090734 138092087 + Gm45019 processed_transcript retained_intron MGP_C57BL6NJ_T0086568.1 MGP_C57BL6NJ_G0033382.1 mouse_genomes_project 7 124561542 124630407 + MGP_C57BL6NJ_P0086568 protein_coding protein_coding MGP_C57BL6NJ_T0086569.1 MGP_C57BL6NJ_G0033382.1 mouse_genomes_project 7 124561857 124631732 + MGP_C57BL6NJ_P0086569 protein_coding protein_coding MGP_C57BL6NJ_T0086570.1 MGP_C57BL6NJ_G0033382.1 mouse_genomes_project 7 124621878 124633848 + MGP_C57BL6NJ_P0086570 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016307.1 MGP_C57BL6NJ_G0014352.1 mouse_genomes_project 7 85642258 85643789 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088118.1 MGP_C57BL6NJ_G0033722.1 mouse_genomes_project 7 151966449 151969429 - MGP_C57BL6NJ_P0088118 Cend1 protein_coding protein_coding MGP_C57BL6NJ_T0088119.1 MGP_C57BL6NJ_G0033722.1 mouse_genomes_project 7 151966449 151969495 - MGP_C57BL6NJ_P0088119 Cend1 protein_coding protein_coding MGP_C57BL6NJ_T0088120.1 MGP_C57BL6NJ_G0033722.1 mouse_genomes_project 7 151966454 151969422 - MGP_C57BL6NJ_P0088120 Cend1 protein_coding protein_coding MGP_C57BL6NJ_T0088121.1 MGP_C57BL6NJ_G0033722.1 mouse_genomes_project 7 151966454 151969355 - MGP_C57BL6NJ_P0088121 Cend1 protein_coding protein_coding MGP_C57BL6NJ_T0016150.1 MGP_C57BL6NJ_G0014195.1 mouse_genomes_project 7 14287135 14288095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082665.1 MGP_C57BL6NJ_G0032276.1 mouse_genomes_project 7 23498071 23515597 - MGP_C57BL6NJ_P0082665 Irgc1 protein_coding protein_coding MGP_C57BL6NJ_T0082666.1 MGP_C57BL6NJ_G0032276.1 mouse_genomes_project 7 23498071 23501684 - MGP_C57BL6NJ_P0082666 Irgc1 protein_coding protein_coding MGP_C57BL6NJ_T0082667.1 MGP_C57BL6NJ_G0032276.1 mouse_genomes_project 7 23499293 23521981 - MGP_C57BL6NJ_P0082667 Irgc1 protein_coding protein_coding MGP_C57BL6NJ_T0082668.1 MGP_C57BL6NJ_G0032276.1 mouse_genomes_project 7 23520285 23522107 - Irgc1 protein_coding processed_transcript MGP_C57BL6NJ_T0082669.1 MGP_C57BL6NJ_G0032276.1 mouse_genomes_project 7 23520690 23522097 - Irgc1 protein_coding processed_transcript MGP_C57BL6NJ_T0085421.1 MGP_C57BL6NJ_G0032964.1 mouse_genomes_project 7 92341066 92341999 + MGP_C57BL6NJ_P0085421 Olfr297 protein_coding protein_coding MGP_C57BL6NJ_T0084045.1 MGP_C57BL6NJ_G0032631.1 mouse_genomes_project 7 46462050 46466300 + MGP_C57BL6NJ_P0084045 Klk1b22 protein_coding protein_coding MGP_C57BL6NJ_T0085376.1 MGP_C57BL6NJ_G0032934.1 mouse_genomes_project 7 89265185 89282843 - MGP_C57BL6NJ_P0085376 Cfap161 protein_coding protein_coding MGP_C57BL6NJ_T0085377.1 MGP_C57BL6NJ_G0032934.1 mouse_genomes_project 7 89266701 89282904 - MGP_C57BL6NJ_P0085377 Cfap161 protein_coding protein_coding MGP_C57BL6NJ_T0085378.1 MGP_C57BL6NJ_G0032934.1 mouse_genomes_project 7 89271301 89282195 - MGP_C57BL6NJ_P0085378 Cfap161 protein_coding protein_coding MGP_C57BL6NJ_T0009035.1 MGP_C57BL6NJ_G0007299.1 mouse_genomes_project 7 41370888 41371462 - lincRNA lincRNA MGP_C57BL6NJ_T0084136.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967154 46984929 - MGP_C57BL6NJ_P0084136 Pold1 protein_coding protein_coding MGP_C57BL6NJ_T0084137.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967157 46968327 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084138.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967159 46984931 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084139.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967162 46969500 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084140.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967194 46984920 - MGP_C57BL6NJ_P0084140 Pold1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084141.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46967688 46968598 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084142.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46968304 46970367 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084143.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46971927 46972827 - Pold1 protein_coding retained_intron MGP_C57BL6NJ_T0084144.1 MGP_C57BL6NJ_G0032651.1 mouse_genomes_project 7 46976510 46984815 - MGP_C57BL6NJ_P0084144 Pold1 protein_coding protein_coding MGP_C57BL6NJ_T0087693.1 MGP_C57BL6NJ_G0033603.1 mouse_genomes_project 7 141843473 141874853 + MGP_C57BL6NJ_P0087693 Gpr26 protein_coding protein_coding MGP_C57BL6NJ_T0103429.1 MGP_C57BL6NJ_G0041221.1 mouse_genomes_project 7 43060194 43063527 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016209.1 MGP_C57BL6NJ_G0014254.1 mouse_genomes_project 7 34219516 34384031 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086795.1 MGP_C57BL6NJ_G0033438.1 mouse_genomes_project 7 130742915 130778032 + MGP_C57BL6NJ_P0086795 Scnn1g protein_coding protein_coding MGP_C57BL6NJ_T0085690.1 MGP_C57BL6NJ_G0033034.1 mouse_genomes_project 7 106187559 106193404 - MGP_C57BL6NJ_P0085690 Rps3 protein_coding protein_coding MGP_C57BL6NJ_T0085691.1 MGP_C57BL6NJ_G0033034.1 mouse_genomes_project 7 106187567 106193317 - MGP_C57BL6NJ_P0085691 Rps3 protein_coding protein_coding MGP_C57BL6NJ_T0085692.1 MGP_C57BL6NJ_G0033034.1 mouse_genomes_project 7 106188558 106193316 - Rps3 protein_coding retained_intron MGP_C57BL6NJ_T0085693.1 MGP_C57BL6NJ_G0033034.1 mouse_genomes_project 7 106189375 106193300 - Rps3 protein_coding retained_intron MGP_C57BL6NJ_T0081663.1 MGP_C57BL6NJ_G0031958.1 mouse_genomes_project 7 193617 202806 + MGP_C57BL6NJ_P0081663 Myadm protein_coding protein_coding MGP_C57BL6NJ_T0081665.1 MGP_C57BL6NJ_G0031958.1 mouse_genomes_project 7 195071 203870 + MGP_C57BL6NJ_P0081665 Myadm protein_coding protein_coding MGP_C57BL6NJ_T0081666.1 MGP_C57BL6NJ_G0031958.1 mouse_genomes_project 7 195112 204963 + MGP_C57BL6NJ_P0081666 Myadm protein_coding protein_coding MGP_C57BL6NJ_T0081667.1 MGP_C57BL6NJ_G0031958.1 mouse_genomes_project 7 196027 201502 + MGP_C57BL6NJ_P0081667 Myadm protein_coding protein_coding MGP_C57BL6NJ_T0081668.1 MGP_C57BL6NJ_G0031958.1 mouse_genomes_project 7 197637 203843 + MGP_C57BL6NJ_P0081668 Myadm protein_coding protein_coding MGP_C57BL6NJ_T0086027.1 MGP_C57BL6NJ_G0033138.1 mouse_genomes_project 7 110455674 110463157 - MGP_C57BL6NJ_P0086027 protein_coding protein_coding MGP_C57BL6NJ_T0082547.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610014 18613072 - MGP_C57BL6NJ_P0082547 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082548.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610172 18612958 - MGP_C57BL6NJ_P0082548 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082549.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610177 18612313 - MGP_C57BL6NJ_P0082549 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082550.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610177 18612914 - MGP_C57BL6NJ_P0082550 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082551.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610177 18612958 - MGP_C57BL6NJ_P0082551 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082552.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610525 18612944 - MGP_C57BL6NJ_P0082552 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082553.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610526 18612527 - MGP_C57BL6NJ_P0082553 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082554.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18610749 18612153 - MGP_C57BL6NJ_P0082554 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082555.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18611145 18612956 - MGP_C57BL6NJ_P0082555 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0082556.1 MGP_C57BL6NJ_G0032239.1 mouse_genomes_project 7 18611161 18612173 - MGP_C57BL6NJ_P0082556 Apoe protein_coding protein_coding MGP_C57BL6NJ_T0085613.1 MGP_C57BL6NJ_G0033015.1 mouse_genomes_project 7 104553760 104683692 + MGP_C57BL6NJ_P0085613 Gdpd4 protein_coding protein_coding MGP_C57BL6NJ_T0085614.1 MGP_C57BL6NJ_G0033015.1 mouse_genomes_project 7 104592660 104682640 + MGP_C57BL6NJ_P0085614 Gdpd4 protein_coding protein_coding MGP_C57BL6NJ_T0103421.1 MGP_C57BL6NJ_G0041213.1 mouse_genomes_project 7 36553900 36556572 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002338.1 MGP_C57BL6NJ_G0002228.1 mouse_genomes_project 7 15561566 15562472 + TEC TEC MGP_C57BL6NJ_T0085565.1 MGP_C57BL6NJ_G0033007.1 mouse_genomes_project 7 103999939 104004734 - MGP_C57BL6NJ_P0085565 Thrsp protein_coding protein_coding MGP_C57BL6NJ_T0085566.1 MGP_C57BL6NJ_G0033007.1 mouse_genomes_project 7 104003123 104004523 - Thrsp protein_coding retained_intron MGP_C57BL6NJ_T0082056.1 MGP_C57BL6NJ_G0032079.1 mouse_genomes_project 7 9775134 9776052 + MGP_C57BL6NJ_P0082056 Vmn1r75 protein_coding protein_coding MGP_C57BL6NJ_T0086018.1 MGP_C57BL6NJ_G0033130.1 mouse_genomes_project 7 110246900 110247845 - MGP_C57BL6NJ_P0086018 Olfr591 protein_coding protein_coding MGP_C57BL6NJ_T0011193.1 MGP_C57BL6NJ_G0009278.1 mouse_genomes_project 7 151750570 151750680 - Mir210 miRNA miRNA MGP_C57BL6NJ_T0084744.1 MGP_C57BL6NJ_G0032814.1 mouse_genomes_project 7 66952002 67089181 - MGP_C57BL6NJ_P0084744 Chrna7 protein_coding protein_coding MGP_C57BL6NJ_T0086632.1 MGP_C57BL6NJ_G0033392.1 mouse_genomes_project 7 127224979 127231841 - MGP_C57BL6NJ_P0086632 Itpripl2 protein_coding protein_coding MGP_C57BL6NJ_T0086919.1 MGP_C57BL6NJ_G0033463.1 mouse_genomes_project 7 134898685 134928585 + MGP_C57BL6NJ_P0086919 Il21r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086920.1 MGP_C57BL6NJ_G0033463.1 mouse_genomes_project 7 134920026 134930070 + MGP_C57BL6NJ_P0086920 Il21r protein_coding protein_coding MGP_C57BL6NJ_T0101857.1 MGP_C57BL6NJ_G0039903.1 mouse_genomes_project 7 47631759 47631843 - Snord33 snoRNA snoRNA MGP_C57BL6NJ_T0087850.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149533271 149539680 + MGP_C57BL6NJ_P0087850 Lrrc27 protein_coding protein_coding MGP_C57BL6NJ_T0087851.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149533532 149558051 + MGP_C57BL6NJ_P0087851 Lrrc27 protein_coding protein_coding MGP_C57BL6NJ_T0087852.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149533619 149575781 + MGP_C57BL6NJ_P0087852 Lrrc27 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087853.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149534930 149549162 + MGP_C57BL6NJ_P0087853 Lrrc27 protein_coding protein_coding MGP_C57BL6NJ_T0087854.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149541999 149555154 + Lrrc27 protein_coding processed_transcript MGP_C57BL6NJ_T0087855.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149548639 149555247 + Lrrc27 protein_coding retained_intron MGP_C57BL6NJ_T0087856.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149562985 149575986 + Lrrc27 protein_coding processed_transcript MGP_C57BL6NJ_T0087857.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149567788 149575987 + Lrrc27 protein_coding processed_transcript MGP_C57BL6NJ_T0087858.1 MGP_C57BL6NJ_G0033642.1 mouse_genomes_project 7 149570508 149575991 + Lrrc27 protein_coding processed_transcript MGP_C57BL6NJ_T0002407.1 MGP_C57BL6NJ_G0002296.1 mouse_genomes_project 7 80916937 80919587 + TEC TEC MGP_C57BL6NJ_T0103435.1 MGP_C57BL6NJ_G0041227.1 mouse_genomes_project 7 44326883 44327018 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087446.1 MGP_C57BL6NJ_G0033553.1 mouse_genomes_project 7 137417370 137422536 - MGP_C57BL6NJ_P0087446 Prss53 protein_coding protein_coding MGP_C57BL6NJ_T0087447.1 MGP_C57BL6NJ_G0033553.1 mouse_genomes_project 7 137417622 137422533 - MGP_C57BL6NJ_P0087447 Prss53 protein_coding protein_coding MGP_C57BL6NJ_T0005454.1 MGP_C57BL6NJ_G0004622.1 mouse_genomes_project 7 137009306 137011738 - 1700008J07Rik antisense antisense MGP_C57BL6NJ_T0087939.1 MGP_C57BL6NJ_G0033665.1 mouse_genomes_project 7 150649271 150661938 + MGP_C57BL6NJ_P0087939 Cd163l1 protein_coding protein_coding MGP_C57BL6NJ_T0084817.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69786005 69798715 + MGP_C57BL6NJ_P0084817 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084818.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788244 69798706 + MGP_C57BL6NJ_P0084818 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084819.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788253 69798717 + MGP_C57BL6NJ_P0084819 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084820.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788283 69794531 + MGP_C57BL6NJ_P0084820 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084821.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788303 69794678 + MGP_C57BL6NJ_P0084821 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084822.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788312 69798704 + MGP_C57BL6NJ_P0084822 Tm2d3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084823.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788313 69798706 + MGP_C57BL6NJ_P0084823 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084824.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788317 69790064 + MGP_C57BL6NJ_P0084824 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084825.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788360 69795956 + MGP_C57BL6NJ_P0084825 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0084826.1 MGP_C57BL6NJ_G0032828.1 mouse_genomes_project 7 69788360 69794673 + MGP_C57BL6NJ_P0084826 Tm2d3 protein_coding protein_coding MGP_C57BL6NJ_T0103454.1 MGP_C57BL6NJ_G0041246.1 mouse_genomes_project 7 46492767 46510487 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100621.1 MGP_C57BL6NJ_G0038667.1 mouse_genomes_project 7 135934170 135934277 - Gm24596 snRNA snRNA MGP_C57BL6NJ_T0009150.1 MGP_C57BL6NJ_G0007375.1 mouse_genomes_project 7 89662643 89707801 + Gm26708 lincRNA lincRNA MGP_C57BL6NJ_T0082258.1 MGP_C57BL6NJ_G0032149.1 mouse_genomes_project 7 14667909 14681323 - MGP_C57BL6NJ_P0082258 C5ar1 protein_coding protein_coding MGP_C57BL6NJ_T0082259.1 MGP_C57BL6NJ_G0032149.1 mouse_genomes_project 7 14667911 14681121 - MGP_C57BL6NJ_P0082259 C5ar1 protein_coding protein_coding MGP_C57BL6NJ_T0081673.1 MGP_C57BL6NJ_G0031960.1 mouse_genomes_project 7 238745 282269 + MGP_C57BL6NJ_P0081673 Cacng7 protein_coding protein_coding MGP_C57BL6NJ_T0081674.1 MGP_C57BL6NJ_G0031960.1 mouse_genomes_project 7 245551 280918 + Cacng7 protein_coding retained_intron MGP_C57BL6NJ_T0086838.1 MGP_C57BL6NJ_G0033447.1 mouse_genomes_project 7 131210461 131221290 + MGP_C57BL6NJ_P0086838 Plk1 protein_coding protein_coding MGP_C57BL6NJ_T0086839.1 MGP_C57BL6NJ_G0033447.1 mouse_genomes_project 7 131210529 131215085 + MGP_C57BL6NJ_P0086839 Plk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086840.1 MGP_C57BL6NJ_G0033447.1 mouse_genomes_project 7 131210603 131212668 + MGP_C57BL6NJ_P0086840 Plk1 protein_coding protein_coding MGP_C57BL6NJ_T0086969.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135721782 135728802 - MGP_C57BL6NJ_P0086969 Spns1 protein_coding protein_coding MGP_C57BL6NJ_T0086970.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135721791 135729136 - Spns1 protein_coding retained_intron MGP_C57BL6NJ_T0086971.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135721791 135729136 - MGP_C57BL6NJ_P0086971 Spns1 protein_coding protein_coding MGP_C57BL6NJ_T0086972.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135721791 135729136 - MGP_C57BL6NJ_P0086972 Spns1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086973.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135722459 135728754 - MGP_C57BL6NJ_P0086973 Spns1 protein_coding protein_coding MGP_C57BL6NJ_T0086974.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135722944 135724644 - Spns1 protein_coding retained_intron MGP_C57BL6NJ_T0086975.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135723304 135728820 - MGP_C57BL6NJ_P0086975 Spns1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086976.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135723588 135724287 - Spns1 protein_coding retained_intron MGP_C57BL6NJ_T0086977.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135724469 135728932 - MGP_C57BL6NJ_P0086977 Spns1 protein_coding protein_coding MGP_C57BL6NJ_T0086978.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135725384 135726088 - Spns1 protein_coding retained_intron MGP_C57BL6NJ_T0086979.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135726000 135728453 - Spns1 protein_coding processed_transcript MGP_C57BL6NJ_T0086980.1 MGP_C57BL6NJ_G0033470.1 mouse_genomes_project 7 135728422 135729146 - Spns1 protein_coding processed_transcript MGP_C57BL6NJ_T0084043.1 MGP_C57BL6NJ_G0032629.1 mouse_genomes_project 7 46320269 46599751 + MGP_C57BL6NJ_P0084043 Klk1b4 protein_coding protein_coding MGP_C57BL6NJ_T0085731.1 MGP_C57BL6NJ_G0033047.1 mouse_genomes_project 7 106961108 106969308 + MGP_C57BL6NJ_P0085731 Kcne3 protein_coding protein_coding MGP_C57BL6NJ_T0085732.1 MGP_C57BL6NJ_G0033047.1 mouse_genomes_project 7 106963121 106969308 + MGP_C57BL6NJ_P0085732 Kcne3 protein_coding protein_coding MGP_C57BL6NJ_T0085733.1 MGP_C57BL6NJ_G0033047.1 mouse_genomes_project 7 106963121 106969308 + MGP_C57BL6NJ_P0085733 Kcne3 protein_coding protein_coding MGP_C57BL6NJ_T0085734.1 MGP_C57BL6NJ_G0033047.1 mouse_genomes_project 7 106963121 106969308 + MGP_C57BL6NJ_P0085734 Kcne3 protein_coding protein_coding MGP_C57BL6NJ_T0083124.1 MGP_C57BL6NJ_G0032396.1 mouse_genomes_project 7 28099215 28109387 + MGP_C57BL6NJ_P0083124 Gmfg protein_coding protein_coding MGP_C57BL6NJ_T0083125.1 MGP_C57BL6NJ_G0032396.1 mouse_genomes_project 7 28099255 28109344 + MGP_C57BL6NJ_P0083125 Gmfg protein_coding protein_coding MGP_C57BL6NJ_T0083126.1 MGP_C57BL6NJ_G0032396.1 mouse_genomes_project 7 28102315 28109380 + MGP_C57BL6NJ_P0083126 Gmfg protein_coding protein_coding MGP_C57BL6NJ_T0083127.1 MGP_C57BL6NJ_G0032396.1 mouse_genomes_project 7 28102452 28107221 + MGP_C57BL6NJ_P0083127 Gmfg protein_coding protein_coding MGP_C57BL6NJ_T0083128.1 MGP_C57BL6NJ_G0032396.1 mouse_genomes_project 7 28104335 28111074 + Gmfg protein_coding processed_transcript MGP_C57BL6NJ_T0083041.1 MGP_C57BL6NJ_G0032368.1 mouse_genomes_project 7 27222877 27226309 + MGP_C57BL6NJ_P0083041 Ttc9b protein_coding protein_coding MGP_C57BL6NJ_T0085529.1 MGP_C57BL6NJ_G0032999.1 mouse_genomes_project 7 99117711 99191679 + MGP_C57BL6NJ_P0085529 Prcp protein_coding protein_coding MGP_C57BL6NJ_T0086011.1 MGP_C57BL6NJ_G0033123.1 mouse_genomes_project 7 110044224 110045166 - MGP_C57BL6NJ_P0086011 Olfr578 protein_coding protein_coding MGP_C57BL6NJ_T0086737.1 MGP_C57BL6NJ_G0033421.1 mouse_genomes_project 7 129056763 129104484 + Abca14 protein_coding processed_transcript MGP_C57BL6NJ_T0086738.1 MGP_C57BL6NJ_G0033421.1 mouse_genomes_project 7 129056766 129181223 + MGP_C57BL6NJ_P0086738 Abca14 protein_coding protein_coding MGP_C57BL6NJ_T0086739.1 MGP_C57BL6NJ_G0033421.1 mouse_genomes_project 7 129056806 129065789 + Abca14 protein_coding retained_intron MGP_C57BL6NJ_T0086740.1 MGP_C57BL6NJ_G0033421.1 mouse_genomes_project 7 129056809 129069053 + Abca14 protein_coding processed_transcript MGP_C57BL6NJ_T0016138.1 MGP_C57BL6NJ_G0014183.1 mouse_genomes_project 7 11635100 11677009 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083699.1 MGP_C57BL6NJ_G0032532.1 mouse_genomes_project 7 34939143 34941099 - MGP_C57BL6NJ_P0083699 Scgb2b27 protein_coding protein_coding MGP_C57BL6NJ_T0083700.1 MGP_C57BL6NJ_G0032532.1 mouse_genomes_project 7 34939154 34941165 - Scgb2b27 protein_coding retained_intron MGP_C57BL6NJ_T0083701.1 MGP_C57BL6NJ_G0032532.1 mouse_genomes_project 7 34939192 34941090 - MGP_C57BL6NJ_P0083701 Scgb2b27 protein_coding protein_coding MGP_C57BL6NJ_T0016302.1 MGP_C57BL6NJ_G0014347.1 mouse_genomes_project 7 80234594 80234873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087215.1 MGP_C57BL6NJ_G0033508.1 mouse_genomes_project 7 136433540 136435860 - MGP_C57BL6NJ_P0087215 protein_coding protein_coding MGP_C57BL6NJ_T0087218.1 MGP_C57BL6NJ_G0033508.1 mouse_genomes_project 7 136433682 136435828 - MGP_C57BL6NJ_P0087218 protein_coding protein_coding MGP_C57BL6NJ_T0087219.1 MGP_C57BL6NJ_G0033508.1 mouse_genomes_project 7 136433884 136435188 - MGP_C57BL6NJ_P0087219 protein_coding protein_coding MGP_C57BL6NJ_T0087220.1 MGP_C57BL6NJ_G0033508.1 mouse_genomes_project 7 136433913 136435825 - MGP_C57BL6NJ_P0087220 protein_coding protein_coding MGP_C57BL6NJ_T0082618.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145162 23151410 + Zfp235 protein_coding retained_intron MGP_C57BL6NJ_T0082619.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145167 23152219 + Zfp235 protein_coding processed_transcript MGP_C57BL6NJ_T0082620.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145189 23156253 + MGP_C57BL6NJ_P0082620 Zfp235 protein_coding protein_coding MGP_C57BL6NJ_T0082621.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145200 23150779 + Zfp235 protein_coding retained_intron MGP_C57BL6NJ_T0082622.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145221 23152223 + Zfp235 protein_coding processed_transcript MGP_C57BL6NJ_T0082623.1 MGP_C57BL6NJ_G0032266.1 mouse_genomes_project 7 23145235 23160751 + MGP_C57BL6NJ_P0082623 Zfp235 protein_coding protein_coding MGP_C57BL6NJ_T0011966.1 MGP_C57BL6NJ_G0010051.1 mouse_genomes_project 7 153933820 153934015 + Gm27389 misc_RNA misc_RNA MGP_C57BL6NJ_T0100603.1 MGP_C57BL6NJ_G0038649.1 mouse_genomes_project 7 101902243 101902350 - Gm25684 snRNA snRNA MGP_C57BL6NJ_T0082710.1 MGP_C57BL6NJ_G0032290.1 mouse_genomes_project 7 23880105 23902072 - MGP_C57BL6NJ_P0082710 Cd177 protein_coding protein_coding MGP_C57BL6NJ_T0082711.1 MGP_C57BL6NJ_G0032290.1 mouse_genomes_project 7 23882459 23890847 - Cd177 protein_coding retained_intron MGP_C57BL6NJ_T0085092.1 MGP_C57BL6NJ_G0032875.1 mouse_genomes_project 7 84802353 84819975 - MGP_C57BL6NJ_P0085092 Kif7 protein_coding protein_coding MGP_C57BL6NJ_T0085093.1 MGP_C57BL6NJ_G0032875.1 mouse_genomes_project 7 84802354 84818441 - MGP_C57BL6NJ_P0085093 Kif7 protein_coding protein_coding MGP_C57BL6NJ_T0085094.1 MGP_C57BL6NJ_G0032875.1 mouse_genomes_project 7 84802354 84818441 - MGP_C57BL6NJ_P0085094 Kif7 protein_coding protein_coding MGP_C57BL6NJ_T0085095.1 MGP_C57BL6NJ_G0032875.1 mouse_genomes_project 7 84802782 84819924 - MGP_C57BL6NJ_P0085095 Kif7 protein_coding protein_coding MGP_C57BL6NJ_T0016354.1 MGP_C57BL6NJ_G0014399.1 mouse_genomes_project 7 123125352 123126477 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099518.1 MGP_C57BL6NJ_G0037570.1 mouse_genomes_project 7 133373713 133484614 + Gm15338 sense_intronic sense_intronic MGP_C57BL6NJ_T0082021.1 MGP_C57BL6NJ_G0032056.1 mouse_genomes_project 7 3818761 3819815 - MGP_C57BL6NJ_P0082021 Olfr1349 protein_coding protein_coding MGP_C57BL6NJ_T0016266.1 MGP_C57BL6NJ_G0014311.1 mouse_genomes_project 7 50960024 50960298 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100633.1 MGP_C57BL6NJ_G0038679.1 mouse_genomes_project 7 153026506 153026614 + Gm26143 snRNA snRNA MGP_C57BL6NJ_T0011964.1 MGP_C57BL6NJ_G0010049.1 mouse_genomes_project 7 153181077 153181147 + Gm27786 misc_RNA misc_RNA MGP_C57BL6NJ_T0082363.1 MGP_C57BL6NJ_G0032180.1 mouse_genomes_project 7 16651480 16660793 + MGP_C57BL6NJ_P0082363 Ceacam13 protein_coding protein_coding MGP_C57BL6NJ_T0082364.1 MGP_C57BL6NJ_G0032180.1 mouse_genomes_project 7 16651480 16655080 + MGP_C57BL6NJ_P0082364 Ceacam13 protein_coding protein_coding MGP_C57BL6NJ_T0083135.1 MGP_C57BL6NJ_G0032399.1 mouse_genomes_project 7 28178913 28185134 - MGP_C57BL6NJ_P0083135 protein_coding protein_coding MGP_C57BL6NJ_T0086016.1 MGP_C57BL6NJ_G0033128.1 mouse_genomes_project 7 110191701 110192655 - MGP_C57BL6NJ_P0086016 Olfr586 protein_coding protein_coding MGP_C57BL6NJ_T0016340.1 MGP_C57BL6NJ_G0014385.1 mouse_genomes_project 7 108128278 108129216 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086329.1 MGP_C57BL6NJ_G0033324.1 mouse_genomes_project 7 116909491 116910424 - MGP_C57BL6NJ_P0086329 Olfr514 protein_coding protein_coding MGP_C57BL6NJ_T0087669.1 MGP_C57BL6NJ_G0033596.1 mouse_genomes_project 7 141152869 141182426 - MGP_C57BL6NJ_P0087669 2310057M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0085469.1 MGP_C57BL6NJ_G0032982.1 mouse_genomes_project 7 95847369 95887373 - MGP_C57BL6NJ_P0085469 Ccdc81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085470.1 MGP_C57BL6NJ_G0032982.1 mouse_genomes_project 7 95847610 95887362 - MGP_C57BL6NJ_P0085470 Ccdc81 protein_coding protein_coding MGP_C57BL6NJ_T0082369.1 MGP_C57BL6NJ_G0032183.1 mouse_genomes_project 7 16910451 16939750 + MGP_C57BL6NJ_P0082369 Mill1 protein_coding protein_coding MGP_C57BL6NJ_T0086139.1 MGP_C57BL6NJ_G0033228.1 mouse_genomes_project 7 112664229 112665181 + MGP_C57BL6NJ_P0086139 protein_coding protein_coding MGP_C57BL6NJ_T0016380.1 MGP_C57BL6NJ_G0014425.1 mouse_genomes_project 7 137692507 137692854 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085389.1 MGP_C57BL6NJ_G0032938.1 mouse_genomes_project 7 89619676 89662179 - MGP_C57BL6NJ_P0085389 Abhd17c protein_coding protein_coding MGP_C57BL6NJ_T0085390.1 MGP_C57BL6NJ_G0032938.1 mouse_genomes_project 7 89624571 89658101 - Abhd17c protein_coding processed_transcript MGP_C57BL6NJ_T0016282.1 MGP_C57BL6NJ_G0014327.1 mouse_genomes_project 7 62380671 62381817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085255.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86148376 86158893 - MGP_C57BL6NJ_P0085255 Wdr73 protein_coding protein_coding MGP_C57BL6NJ_T0085256.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86148377 86158856 - Wdr73 protein_coding retained_intron MGP_C57BL6NJ_T0085257.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86148377 86158856 - Wdr73 protein_coding retained_intron MGP_C57BL6NJ_T0085258.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86148896 86158858 - Wdr73 protein_coding retained_intron MGP_C57BL6NJ_T0085259.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86150631 86158843 - Wdr73 protein_coding processed_transcript MGP_C57BL6NJ_T0085260.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86150695 86158844 - MGP_C57BL6NJ_P0085260 Wdr73 protein_coding protein_coding MGP_C57BL6NJ_T0085261.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86150696 86158343 - Wdr73 protein_coding processed_transcript MGP_C57BL6NJ_T0085262.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86151335 86158128 - Wdr73 protein_coding processed_transcript MGP_C57BL6NJ_T0085263.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86155571 86158868 - Wdr73 protein_coding processed_transcript MGP_C57BL6NJ_T0085264.1 MGP_C57BL6NJ_G0032903.1 mouse_genomes_project 7 86158296 86158856 - Wdr73 protein_coding processed_transcript MGP_C57BL6NJ_T0005350.1 MGP_C57BL6NJ_G0004551.1 mouse_genomes_project 7 31018612 31019397 + Gm4673 antisense antisense MGP_C57BL6NJ_T0005351.1 MGP_C57BL6NJ_G0004551.1 mouse_genomes_project 7 31018951 31023162 + Gm4673 antisense antisense MGP_C57BL6NJ_T0103363.1 MGP_C57BL6NJ_G0041156.1 mouse_genomes_project 7 12830977 13869413 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011162.1 MGP_C57BL6NJ_G0009247.1 mouse_genomes_project 7 84593462 84593552 + Mir9-3 miRNA miRNA MGP_C57BL6NJ_T0002384.1 MGP_C57BL6NJ_G0002274.1 mouse_genomes_project 7 68138490 68138926 - TEC TEC MGP_C57BL6NJ_T0101895.1 MGP_C57BL6NJ_G0039941.1 mouse_genomes_project 7 123274805 123274937 - Gm24982 snoRNA snoRNA MGP_C57BL6NJ_T0082898.1 MGP_C57BL6NJ_G0032333.1 mouse_genomes_project 7 25794872 25851043 + MGP_C57BL6NJ_P0082898 Nlrp4a protein_coding protein_coding MGP_C57BL6NJ_T0082899.1 MGP_C57BL6NJ_G0032333.1 mouse_genomes_project 7 25795373 25850113 + MGP_C57BL6NJ_P0082899 Nlrp4a protein_coding protein_coding MGP_C57BL6NJ_T0082900.1 MGP_C57BL6NJ_G0032333.1 mouse_genomes_project 7 25795405 25823932 + Nlrp4a protein_coding processed_transcript MGP_C57BL6NJ_T0082901.1 MGP_C57BL6NJ_G0032333.1 mouse_genomes_project 7 25795405 25837301 + MGP_C57BL6NJ_P0082901 Nlrp4a protein_coding protein_coding MGP_C57BL6NJ_T0103463.1 MGP_C57BL6NJ_G0041255.1 mouse_genomes_project 7 50299928 50300841 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084552.1 MGP_C57BL6NJ_G0032756.1 mouse_genomes_project 7 49531593 49553079 + MGP_C57BL6NJ_P0084552 Ldhc protein_coding protein_coding MGP_C57BL6NJ_T0084553.1 MGP_C57BL6NJ_G0032756.1 mouse_genomes_project 7 49531712 49550725 + MGP_C57BL6NJ_P0084553 Ldhc protein_coding protein_coding MGP_C57BL6NJ_T0084554.1 MGP_C57BL6NJ_G0032756.1 mouse_genomes_project 7 49533991 49551411 + MGP_C57BL6NJ_P0084554 Ldhc protein_coding protein_coding MGP_C57BL6NJ_T0103379.1 MGP_C57BL6NJ_G0041172.1 mouse_genomes_project 7 16251898 16259605 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082173.1 MGP_C57BL6NJ_G0032119.1 mouse_genomes_project 7 11644868 11727564 + MGP_C57BL6NJ_P0082173 protein_coding protein_coding MGP_C57BL6NJ_T0086285.1 MGP_C57BL6NJ_G0033286.1 mouse_genomes_project 7 115113436 115114908 + MGP_C57BL6NJ_P0086285 Rbmxl2 protein_coding protein_coding MGP_C57BL6NJ_T0086587.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879178 124881865 - MGP_C57BL6NJ_P0086587 Rps13 protein_coding protein_coding MGP_C57BL6NJ_T0086588.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879183 124881803 - MGP_C57BL6NJ_P0086588 Rps13 protein_coding protein_coding MGP_C57BL6NJ_T0086589.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879184 124880852 - Rps13 protein_coding retained_intron MGP_C57BL6NJ_T0086590.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879185 124881800 - Rps13 protein_coding retained_intron MGP_C57BL6NJ_T0086591.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879185 124881805 - Rps13 protein_coding retained_intron MGP_C57BL6NJ_T0086592.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879185 124881836 - MGP_C57BL6NJ_P0086592 Rps13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086593.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124879724 124881787 - Rps13 protein_coding retained_intron MGP_C57BL6NJ_T0086594.1 MGP_C57BL6NJ_G0033384.1 mouse_genomes_project 7 124880709 124881792 - Rps13 protein_coding retained_intron MGP_C57BL6NJ_T0085714.1 MGP_C57BL6NJ_G0033040.1 mouse_genomes_project 7 106555757 106581251 - MGP_C57BL6NJ_P0085714 Neu3 protein_coding protein_coding MGP_C57BL6NJ_T0088017.1 MGP_C57BL6NJ_G0033701.1 mouse_genomes_project 7 151533428 151533906 + MGP_C57BL6NJ_P0088017 Gm17387 protein_coding protein_coding MGP_C57BL6NJ_T0016156.1 MGP_C57BL6NJ_G0014201.1 mouse_genomes_project 7 15587790 15588255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0008983.1 MGP_C57BL6NJ_G0007255.1 mouse_genomes_project 7 10875935 10896973 - 1810019N24Rik lincRNA lincRNA MGP_C57BL6NJ_T0008984.1 MGP_C57BL6NJ_G0007255.1 mouse_genomes_project 7 10877033 10877410 - 1810019N24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009233.1 MGP_C57BL6NJ_G0007429.1 mouse_genomes_project 7 139501733 139526516 + Gm44778 lincRNA lincRNA MGP_C57BL6NJ_T0009109.1 MGP_C57BL6NJ_G0007353.1 mouse_genomes_project 7 78284243 78289870 + Gm44734 lincRNA lincRNA MGP_C57BL6NJ_T0086266.1 MGP_C57BL6NJ_G0033268.1 mouse_genomes_project 7 114680645 114683900 - MGP_C57BL6NJ_P0086266 Olfr702 protein_coding protein_coding MGP_C57BL6NJ_T0085428.1 MGP_C57BL6NJ_G0032970.1 mouse_genomes_project 7 92639599 92662655 + MGP_C57BL6NJ_P0085428 protein_coding protein_coding MGP_C57BL6NJ_T0084741.1 MGP_C57BL6NJ_G0032811.1 mouse_genomes_project 7 66222712 66227347 + MGP_C57BL6NJ_P0084741 Magel2 protein_coding protein_coding MGP_C57BL6NJ_T0005422.1 MGP_C57BL6NJ_G0004602.1 mouse_genomes_project 7 104268152 104315648 - Rsf1os2 antisense antisense MGP_C57BL6NJ_T0005423.1 MGP_C57BL6NJ_G0004602.1 mouse_genomes_project 7 104312527 104315726 - Rsf1os2 antisense antisense MGP_C57BL6NJ_T0005424.1 MGP_C57BL6NJ_G0004602.1 mouse_genomes_project 7 104314987 104315933 - Rsf1os2 antisense antisense MGP_C57BL6NJ_T0086741.1 MGP_C57BL6NJ_G0033422.1 mouse_genomes_project 7 129184554 129227499 + Abca15 protein_coding retained_intron MGP_C57BL6NJ_T0086742.1 MGP_C57BL6NJ_G0033422.1 mouse_genomes_project 7 129184554 129287792 + MGP_C57BL6NJ_P0086742 Abca15 protein_coding protein_coding MGP_C57BL6NJ_T0086743.1 MGP_C57BL6NJ_G0033422.1 mouse_genomes_project 7 129184554 129287792 + MGP_C57BL6NJ_P0086743 Abca15 protein_coding protein_coding MGP_C57BL6NJ_T0088332.1 MGP_C57BL6NJ_G0033757.1 mouse_genomes_project 7 153459967 153478416 + MGP_C57BL6NJ_P0088332 protein_coding protein_coding MGP_C57BL6NJ_T0088333.1 MGP_C57BL6NJ_G0033757.1 mouse_genomes_project 7 153477068 153477615 + protein_coding processed_transcript MGP_C57BL6NJ_T0011140.1 MGP_C57BL6NJ_G0009225.1 mouse_genomes_project 7 65468535 65468604 - Gm22466 miRNA miRNA MGP_C57BL6NJ_T0103341.1 MGP_C57BL6NJ_G0041134.1 mouse_genomes_project 7 10325893 10326505 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085279.1 MGP_C57BL6NJ_G0032906.1 mouse_genomes_project 7 86259866 86317514 + MGP_C57BL6NJ_P0085279 Zfp592 protein_coding protein_coding MGP_C57BL6NJ_T0085280.1 MGP_C57BL6NJ_G0032906.1 mouse_genomes_project 7 86294348 86295522 + Zfp592 protein_coding processed_transcript MGP_C57BL6NJ_T0085281.1 MGP_C57BL6NJ_G0032906.1 mouse_genomes_project 7 86310103 86310665 + Zfp592 protein_coding retained_intron MGP_C57BL6NJ_T0085282.1 MGP_C57BL6NJ_G0032906.1 mouse_genomes_project 7 86310379 86313803 + Zfp592 protein_coding retained_intron MGP_C57BL6NJ_T0085143.1 MGP_C57BL6NJ_G0032889.1 mouse_genomes_project 7 85432930 85448775 + MGP_C57BL6NJ_P0085143 Ttll13 protein_coding protein_coding MGP_C57BL6NJ_T0085144.1 MGP_C57BL6NJ_G0032889.1 mouse_genomes_project 7 85432979 85433359 + Ttll13 protein_coding retained_intron MGP_C57BL6NJ_T0085145.1 MGP_C57BL6NJ_G0032889.1 mouse_genomes_project 7 85433109 85447149 + Ttll13 protein_coding retained_intron MGP_C57BL6NJ_T0085146.1 MGP_C57BL6NJ_G0032889.1 mouse_genomes_project 7 85433548 85440836 + Ttll13 protein_coding retained_intron MGP_C57BL6NJ_T0085147.1 MGP_C57BL6NJ_G0032889.1 mouse_genomes_project 7 85433942 85448624 + MGP_C57BL6NJ_P0085147 Ttll13 protein_coding protein_coding MGP_C57BL6NJ_T0084636.1 MGP_C57BL6NJ_G0032789.1 mouse_genomes_project 7 54733729 54783499 + MGP_C57BL6NJ_P0084636 Slc17a6 protein_coding protein_coding MGP_C57BL6NJ_T0084229.1 MGP_C57BL6NJ_G0032668.1 mouse_genomes_project 7 47369586 47374131 + MGP_C57BL6NJ_P0084229 Fuz protein_coding protein_coding MGP_C57BL6NJ_T0085991.1 MGP_C57BL6NJ_G0033105.1 mouse_genomes_project 7 109694250 109695273 + MGP_C57BL6NJ_P0085991 Olfr556 protein_coding protein_coding MGP_C57BL6NJ_T0083359.1 MGP_C57BL6NJ_G0032453.1 mouse_genomes_project 7 30094236 30096094 + MGP_C57BL6NJ_P0083359 Cox7a1 protein_coding protein_coding MGP_C57BL6NJ_T0086314.1 MGP_C57BL6NJ_G0033309.1 mouse_genomes_project 7 116320624 116321569 - MGP_C57BL6NJ_P0086314 protein_coding protein_coding MGP_C57BL6NJ_T0085290.1 MGP_C57BL6NJ_G0032910.1 mouse_genomes_project 7 86666017 86667817 - Rps17 protein_coding processed_transcript MGP_C57BL6NJ_T0085291.1 MGP_C57BL6NJ_G0032910.1 mouse_genomes_project 7 86666018 86668540 - MGP_C57BL6NJ_P0085291 Rps17 protein_coding protein_coding MGP_C57BL6NJ_T0085292.1 MGP_C57BL6NJ_G0032910.1 mouse_genomes_project 7 86666025 86668520 - Rps17 protein_coding retained_intron MGP_C57BL6NJ_T0085293.1 MGP_C57BL6NJ_G0032910.1 mouse_genomes_project 7 86666702 86668518 - Rps17 protein_coding retained_intron MGP_C57BL6NJ_T0085294.1 MGP_C57BL6NJ_G0032910.1 mouse_genomes_project 7 86667989 86668510 - Rps17 protein_coding processed_transcript MGP_C57BL6NJ_T0005421.1 MGP_C57BL6NJ_G0004601.1 mouse_genomes_project 7 104207624 104261190 - Rsf1os1 antisense antisense MGP_C57BL6NJ_T0086286.1 MGP_C57BL6NJ_G0033287.1 mouse_genomes_project 7 115285457 115352897 + MGP_C57BL6NJ_P0086286 Syt9 protein_coding protein_coding MGP_C57BL6NJ_T0086287.1 MGP_C57BL6NJ_G0033287.1 mouse_genomes_project 7 115285519 115469445 + MGP_C57BL6NJ_P0086287 Syt9 protein_coding protein_coding MGP_C57BL6NJ_T0086288.1 MGP_C57BL6NJ_G0033287.1 mouse_genomes_project 7 115285519 115469442 + MGP_C57BL6NJ_P0086288 Syt9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086289.1 MGP_C57BL6NJ_G0033287.1 mouse_genomes_project 7 115419926 115469442 + Syt9 protein_coding retained_intron MGP_C57BL6NJ_T0086290.1 MGP_C57BL6NJ_G0033287.1 mouse_genomes_project 7 115419960 115469442 + Syt9 protein_coding retained_intron MGP_C57BL6NJ_T0002355.1 MGP_C57BL6NJ_G0002245.1 mouse_genomes_project 7 38791084 38793387 - TEC TEC MGP_C57BL6NJ_T0103390.1 MGP_C57BL6NJ_G0041182.1 mouse_genomes_project 7 31337376 31339576 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083945.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45488216 45505255 - MGP_C57BL6NJ_P0083945 Zfp715 protein_coding protein_coding MGP_C57BL6NJ_T0083946.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45488542 45505263 - MGP_C57BL6NJ_P0083946 Zfp715 protein_coding protein_coding MGP_C57BL6NJ_T0083947.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45488542 45503494 - MGP_C57BL6NJ_P0083947 Zfp715 protein_coding protein_coding MGP_C57BL6NJ_T0083948.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45488542 45505271 - MGP_C57BL6NJ_P0083948 Zfp715 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0083949.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45491971 45505103 - MGP_C57BL6NJ_P0083949 Zfp715 protein_coding protein_coding MGP_C57BL6NJ_T0083950.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45493495 45505302 - Zfp715 protein_coding retained_intron MGP_C57BL6NJ_T0083951.1 MGP_C57BL6NJ_G0032591.1 mouse_genomes_project 7 45493629 45505071 - MGP_C57BL6NJ_P0083951 Zfp715 protein_coding protein_coding MGP_C57BL6NJ_T0086353.1 MGP_C57BL6NJ_G0033335.1 mouse_genomes_project 7 117561886 117607861 - MGP_C57BL6NJ_P0086353 Trim66 protein_coding protein_coding MGP_C57BL6NJ_T0086354.1 MGP_C57BL6NJ_G0033335.1 mouse_genomes_project 7 117566371 117621597 - MGP_C57BL6NJ_P0086354 Trim66 protein_coding protein_coding MGP_C57BL6NJ_T0086355.1 MGP_C57BL6NJ_G0033335.1 mouse_genomes_project 7 117566371 117621597 - MGP_C57BL6NJ_P0086355 Trim66 protein_coding protein_coding MGP_C57BL6NJ_T0086356.1 MGP_C57BL6NJ_G0033335.1 mouse_genomes_project 7 117582581 117588693 - Trim66 protein_coding processed_transcript MGP_C57BL6NJ_T0082508.1 MGP_C57BL6NJ_G0032224.1 mouse_genomes_project 7 18293695 18296124 - MGP_C57BL6NJ_P0082508 protein_coding protein_coding MGP_C57BL6NJ_T0101863.1 MGP_C57BL6NJ_G0039909.1 mouse_genomes_project 7 62903707 62903786 - Gm24966 snoRNA snoRNA MGP_C57BL6NJ_T0016122.1 MGP_C57BL6NJ_G0014167.1 mouse_genomes_project 7 1618987 1619720 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088357.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153713909 153715754 + MGP_C57BL6NJ_P0088357 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0088358.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153714001 153715207 + MGP_C57BL6NJ_P0088358 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0088359.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153714028 153715748 + MGP_C57BL6NJ_P0088359 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0088360.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153714028 153715748 + MGP_C57BL6NJ_P0088360 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0088361.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153714084 153715206 + MGP_C57BL6NJ_P0088361 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0088362.1 MGP_C57BL6NJ_G0033763.1 mouse_genomes_project 7 153714204 153715270 + MGP_C57BL6NJ_P0088362 Tssc4 protein_coding protein_coding MGP_C57BL6NJ_T0087968.1 MGP_C57BL6NJ_G0033687.1 mouse_genomes_project 7 151319957 151321180 + MGP_C57BL6NJ_P0087968 Scgb1c1 protein_coding protein_coding MGP_C57BL6NJ_T0103484.1 MGP_C57BL6NJ_G0041276.1 mouse_genomes_project 7 51470504 51471396 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084755.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68085168 68210289 + MGP_C57BL6NJ_P0084755 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084756.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68085178 68209646 + MGP_C57BL6NJ_P0084756 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084757.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68085178 68163599 + MGP_C57BL6NJ_P0084757 Trpm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084758.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68085261 68209646 + MGP_C57BL6NJ_P0084758 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084759.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118733 68147721 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084760.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118811 68135637 + Trpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0084761.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118811 68161630 + MGP_C57BL6NJ_P0084761 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084762.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118902 68161558 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084763.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118904 68210271 + MGP_C57BL6NJ_P0084763 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084764.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118905 68138371 + MGP_C57BL6NJ_P0084764 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084765.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118907 68155529 + MGP_C57BL6NJ_P0084765 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084766.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118936 68155529 + MGP_C57BL6NJ_P0084766 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084767.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68118953 68138344 + MGP_C57BL6NJ_P0084767 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084768.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68135615 68138487 + MGP_C57BL6NJ_P0084768 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084769.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68139463 68147183 + Trpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0084770.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68139463 68144623 + MGP_C57BL6NJ_P0084770 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084771.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68146316 68157150 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084772.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68147202 68160554 + MGP_C57BL6NJ_P0084772 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0084773.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68156668 68160017 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084774.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68163440 68181293 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084775.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68163807 68169224 + Trpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0084776.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68183515 68208654 + Trpm1 protein_coding retained_intron MGP_C57BL6NJ_T0084777.1 MGP_C57BL6NJ_G0032818.1 mouse_genomes_project 7 68183728 68208534 + MGP_C57BL6NJ_P0084777 Trpm1 protein_coding protein_coding MGP_C57BL6NJ_T0103530.1 MGP_C57BL6NJ_G0041322.1 mouse_genomes_project 7 110789981 110790916 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085503.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97193222 98641842 + MGP_C57BL6NJ_P0085503 Dlg2 protein_coding protein_coding MGP_C57BL6NJ_T0085504.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97193242 98476736 + Dlg2 protein_coding processed_transcript MGP_C57BL6NJ_T0085505.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97193244 98641842 + MGP_C57BL6NJ_P0085505 Dlg2 protein_coding protein_coding MGP_C57BL6NJ_T0085506.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97818704 98159949 + Dlg2 protein_coding retained_intron MGP_C57BL6NJ_T0085507.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97859274 98641842 + MGP_C57BL6NJ_P0085507 Dlg2 protein_coding protein_coding MGP_C57BL6NJ_T0085508.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 97859528 98102657 + Dlg2 protein_coding processed_transcript MGP_C57BL6NJ_T0085509.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 98228504 98641842 + MGP_C57BL6NJ_P0085509 Dlg2 protein_coding protein_coding MGP_C57BL6NJ_T0085510.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 98362004 98478450 + Dlg2 protein_coding retained_intron MGP_C57BL6NJ_T0085511.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 98420801 98641323 + Dlg2 protein_coding processed_transcript MGP_C57BL6NJ_T0085512.1 MGP_C57BL6NJ_G0032993.1 mouse_genomes_project 7 98421005 98625053 + Dlg2 protein_coding processed_transcript MGP_C57BL6NJ_T0083515.1 MGP_C57BL6NJ_G0032483.1 mouse_genomes_project 7 30573095 30584756 - MGP_C57BL6NJ_P0083515 Upk1a protein_coding protein_coding MGP_C57BL6NJ_T0086017.1 MGP_C57BL6NJ_G0033129.1 mouse_genomes_project 7 110233702 110234656 - MGP_C57BL6NJ_P0086017 Olfr589 protein_coding protein_coding MGP_C57BL6NJ_T0081886.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1733282 1740681 + MGP_C57BL6NJ_P0081886 Suv420h2 protein_coding protein_coding MGP_C57BL6NJ_T0081887.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1733320 1735256 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081888.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1733323 1736221 + MGP_C57BL6NJ_P0081888 Suv420h2 protein_coding protein_coding MGP_C57BL6NJ_T0081889.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1733334 1740681 + MGP_C57BL6NJ_P0081889 Suv420h2 protein_coding protein_coding MGP_C57BL6NJ_T0081890.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1733352 1740681 + MGP_C57BL6NJ_P0081890 Suv420h2 protein_coding protein_coding MGP_C57BL6NJ_T0081891.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1734802 1735705 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081892.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1735017 1740065 + MGP_C57BL6NJ_P0081892 Suv420h2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081893.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1735491 1739075 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081894.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1735621 1736672 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081895.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1735824 1736796 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081896.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1735911 1739288 + Suv420h2 protein_coding retained_intron MGP_C57BL6NJ_T0081897.1 MGP_C57BL6NJ_G0032000.1 mouse_genomes_project 7 1738974 1739763 + MGP_C57BL6NJ_P0081897 Suv420h2 protein_coding protein_coding MGP_C57BL6NJ_T0087946.1 MGP_C57BL6NJ_G0033670.1 mouse_genomes_project 7 150812510 150813590 - MGP_C57BL6NJ_P0087946 Olfr530 protein_coding protein_coding MGP_C57BL6NJ_T0088311.1 MGP_C57BL6NJ_G0033754.1 mouse_genomes_project 7 153134258 153142036 + Mrpl23 protein_coding processed_transcript MGP_C57BL6NJ_T0088312.1 MGP_C57BL6NJ_G0033754.1 mouse_genomes_project 7 153134637 153142026 + MGP_C57BL6NJ_P0088312 Mrpl23 protein_coding protein_coding MGP_C57BL6NJ_T0088313.1 MGP_C57BL6NJ_G0033754.1 mouse_genomes_project 7 153135981 153138503 + Mrpl23 protein_coding retained_intron MGP_C57BL6NJ_T0088314.1 MGP_C57BL6NJ_G0033754.1 mouse_genomes_project 7 153137563 153139124 + Mrpl23 protein_coding retained_intron MGP_C57BL6NJ_T0082293.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15269216 15285702 + MGP_C57BL6NJ_P0082293 Slc1a5 protein_coding protein_coding MGP_C57BL6NJ_T0082294.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15269244 15285702 + Slc1a5 protein_coding retained_intron MGP_C57BL6NJ_T0082295.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15270274 15274706 + Slc1a5 protein_coding retained_intron MGP_C57BL6NJ_T0082296.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15272614 15281134 + Slc1a5 protein_coding processed_transcript MGP_C57BL6NJ_T0082297.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15273254 15274706 + Slc1a5 protein_coding retained_intron MGP_C57BL6NJ_T0082298.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15273959 15281224 + Slc1a5 protein_coding retained_intron MGP_C57BL6NJ_T0082299.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15280454 15283587 + Slc1a5 protein_coding processed_transcript MGP_C57BL6NJ_T0082300.1 MGP_C57BL6NJ_G0032161.1 mouse_genomes_project 7 15280604 15283371 + Slc1a5 protein_coding retained_intron MGP_C57BL6NJ_T0084876.1 MGP_C57BL6NJ_G0032838.1 mouse_genomes_project 7 70898506 70985079 + MGP_C57BL6NJ_P0084876 Cers3 protein_coding protein_coding MGP_C57BL6NJ_T0099157.1 MGP_C57BL6NJ_G0037221.1 mouse_genomes_project 7 141940364 141940484 + n-R5s159 rRNA rRNA MGP_C57BL6NJ_T0099511.1 MGP_C57BL6NJ_G0037564.1 mouse_genomes_project 7 76693229 76694269 - sense_intronic sense_intronic MGP_C57BL6NJ_T0083934.1 MGP_C57BL6NJ_G0032585.1 mouse_genomes_project 7 44583719 44587223 - MGP_C57BL6NJ_P0083934 Zfp977 protein_coding protein_coding MGP_C57BL6NJ_T0011201.1 MGP_C57BL6NJ_G0009286.1 mouse_genomes_project 7 154753117 154753202 + Mir3105 miRNA miRNA MGP_C57BL6NJ_T0085197.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85544960 85570845 - Man2a2 protein_coding retained_intron MGP_C57BL6NJ_T0085198.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85544960 85579353 - MGP_C57BL6NJ_P0085198 Man2a2 protein_coding protein_coding MGP_C57BL6NJ_T0085199.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85546741 85567128 - MGP_C57BL6NJ_P0085199 Man2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085200.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85562290 85571055 - Man2a2 protein_coding retained_intron MGP_C57BL6NJ_T0085201.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85566516 85567294 - Man2a2 protein_coding retained_intron MGP_C57BL6NJ_T0085202.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85567099 85570883 - MGP_C57BL6NJ_P0085202 Man2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085203.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85567670 85578839 - MGP_C57BL6NJ_P0085203 Man2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085204.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85567834 85579104 - Man2a2 protein_coding retained_intron MGP_C57BL6NJ_T0085205.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85570048 85571043 - Man2a2 protein_coding retained_intron MGP_C57BL6NJ_T0085206.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85577615 85578836 - MGP_C57BL6NJ_P0085206 Man2a2 protein_coding protein_coding MGP_C57BL6NJ_T0085207.1 MGP_C57BL6NJ_G0032896.1 mouse_genomes_project 7 85577643 85579060 - MGP_C57BL6NJ_P0085207 Man2a2 protein_coding protein_coding MGP_C57BL6NJ_T0082034.1 MGP_C57BL6NJ_G0032061.1 mouse_genomes_project 7 4450703 4457459 - MGP_C57BL6NJ_P0082034 Zfp954 protein_coding protein_coding MGP_C57BL6NJ_T0087242.1 MGP_C57BL6NJ_G0033513.1 mouse_genomes_project 7 136469550 136472070 - MGP_C57BL6NJ_P0087242 Zg16 protein_coding protein_coding MGP_C57BL6NJ_T0087243.1 MGP_C57BL6NJ_G0033513.1 mouse_genomes_project 7 136469550 136471372 - MGP_C57BL6NJ_P0087243 Zg16 protein_coding protein_coding MGP_C57BL6NJ_T0087244.1 MGP_C57BL6NJ_G0033513.1 mouse_genomes_project 7 136469870 136508728 - MGP_C57BL6NJ_P0087244 Zg16 protein_coding protein_coding MGP_C57BL6NJ_T0087245.1 MGP_C57BL6NJ_G0033513.1 mouse_genomes_project 7 136483148 136508686 - Zg16 protein_coding processed_transcript MGP_C57BL6NJ_T0086540.1 MGP_C57BL6NJ_G0033379.1 mouse_genomes_project 7 123147794 123152526 + MGP_C57BL6NJ_P0086540 Calcb protein_coding protein_coding MGP_C57BL6NJ_T0086541.1 MGP_C57BL6NJ_G0033379.1 mouse_genomes_project 7 123147826 123152224 + MGP_C57BL6NJ_P0086541 Calcb protein_coding protein_coding MGP_C57BL6NJ_T0086542.1 MGP_C57BL6NJ_G0033379.1 mouse_genomes_project 7 123148662 123149291 + MGP_C57BL6NJ_P0086542 Calcb protein_coding protein_coding MGP_C57BL6NJ_T0018812.1 MGP_C57BL6NJ_G0016058.1 mouse_genomes_project 7 46659273 46659718 + processed_transcript lincRNA MGP_C57BL6NJ_T0018813.1 MGP_C57BL6NJ_G0016058.1 mouse_genomes_project 7 46659356 46659715 + processed_transcript retained_intron MGP_C57BL6NJ_T0018814.1 MGP_C57BL6NJ_G0016058.1 mouse_genomes_project 7 46659387 46659716 + processed_transcript retained_intron MGP_C57BL6NJ_T0083009.1 MGP_C57BL6NJ_G0032364.1 mouse_genomes_project 7 27047881 27055808 + MGP_C57BL6NJ_P0083009 Hipk4 protein_coding protein_coding MGP_C57BL6NJ_T0083010.1 MGP_C57BL6NJ_G0032364.1 mouse_genomes_project 7 27051673 27055803 + MGP_C57BL6NJ_P0083010 Hipk4 protein_coding protein_coding MGP_C57BL6NJ_T0088423.1 MGP_C57BL6NJ_G0033778.1 mouse_genomes_project 7 154598175 154604097 + Gm498 protein_coding processed_transcript MGP_C57BL6NJ_T0088424.1 MGP_C57BL6NJ_G0033778.1 mouse_genomes_project 7 154600477 154632738 + MGP_C57BL6NJ_P0088424 Gm498 protein_coding protein_coding MGP_C57BL6NJ_T0088425.1 MGP_C57BL6NJ_G0033778.1 mouse_genomes_project 7 154600483 154633748 + MGP_C57BL6NJ_P0088425 Gm498 protein_coding protein_coding MGP_C57BL6NJ_T0103386.1 MGP_C57BL6NJ_G0041178.1 mouse_genomes_project 7 25601533 25602080 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009229.1 MGP_C57BL6NJ_G0007426.1 mouse_genomes_project 7 138429257 138573174 + Gm44671 lincRNA lincRNA MGP_C57BL6NJ_T0011139.1 MGP_C57BL6NJ_G0009224.1 mouse_genomes_project 7 65466421 65466501 - Gm23490 miRNA miRNA MGP_C57BL6NJ_T0002374.1 MGP_C57BL6NJ_G0002264.1 mouse_genomes_project 7 58379493 58381667 + TEC TEC MGP_C57BL6NJ_T0084042.1 MGP_C57BL6NJ_G0032628.1 mouse_genomes_project 7 46311246 46458414 + MGP_C57BL6NJ_P0084042 protein_coding protein_coding MGP_C57BL6NJ_T0083895.1 MGP_C57BL6NJ_G0032568.1 mouse_genomes_project 7 40631559 40643646 - MGP_C57BL6NJ_P0083895 protein_coding protein_coding MGP_C57BL6NJ_T0102565.1 MGP_C57BL6NJ_G0040400.1 mouse_genomes_project 7 43524414 43545681 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102566.1 MGP_C57BL6NJ_G0040400.1 mouse_genomes_project 7 43524427 43553369 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102567.1 MGP_C57BL6NJ_G0040400.1 mouse_genomes_project 7 43524449 43597829 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102568.1 MGP_C57BL6NJ_G0040400.1 mouse_genomes_project 7 43544138 43593163 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0083924.1 MGP_C57BL6NJ_G0032579.1 mouse_genomes_project 7 43942615 43993073 - MGP_C57BL6NJ_P0083924 Vmn2r59 protein_coding protein_coding MGP_C57BL6NJ_T0018878.1 MGP_C57BL6NJ_G0016082.1 mouse_genomes_project 7 133129155 133138961 - Gm26974 processed_transcript lincRNA MGP_C57BL6NJ_T0018879.1 MGP_C57BL6NJ_G0016082.1 mouse_genomes_project 7 133136592 133138576 - Gm26974 processed_transcript lincRNA MGP_C57BL6NJ_T0018880.1 MGP_C57BL6NJ_G0016082.1 mouse_genomes_project 7 133136594 133138080 - Gm26974 processed_transcript retained_intron MGP_C57BL6NJ_T0082716.1 MGP_C57BL6NJ_G0032293.1 mouse_genomes_project 7 24049818 24058949 + MGP_C57BL6NJ_P0082716 Dmrtc2 protein_coding protein_coding MGP_C57BL6NJ_T0087292.1 MGP_C57BL6NJ_G0033524.1 mouse_genomes_project 7 136723843 136726011 - MGP_C57BL6NJ_P0087292 protein_coding protein_coding MGP_C57BL6NJ_T0085945.1 MGP_C57BL6NJ_G0033087.1 mouse_genomes_project 7 109106539 109111878 - MGP_C57BL6NJ_P0085945 Chrna10 protein_coding protein_coding MGP_C57BL6NJ_T0082373.1 MGP_C57BL6NJ_G0032186.1 mouse_genomes_project 7 17301609 17326275 - MGP_C57BL6NJ_P0082373 Psg27 protein_coding protein_coding MGP_C57BL6NJ_T0009157.1 MGP_C57BL6NJ_G0007382.1 mouse_genomes_project 7 99315554 99347692 - Gm9934 lincRNA lincRNA MGP_C57BL6NJ_T0009158.1 MGP_C57BL6NJ_G0007382.1 mouse_genomes_project 7 99333996 99347460 - Gm9934 lincRNA lincRNA MGP_C57BL6NJ_T0005475.1 MGP_C57BL6NJ_G0004638.1 mouse_genomes_project 7 153633682 153652750 - Tspan32os antisense antisense MGP_C57BL6NJ_T0005476.1 MGP_C57BL6NJ_G0004638.1 mouse_genomes_project 7 153633682 153635524 - Tspan32os antisense antisense MGP_C57BL6NJ_T0103543.1 MGP_C57BL6NJ_G0041335.1 mouse_genomes_project 7 112613051 112615216 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002455.1 MGP_C57BL6NJ_G0002344.1 mouse_genomes_project 7 137336967 137338321 - TEC TEC MGP_C57BL6NJ_T0085085.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84762182 84802404 + MGP_C57BL6NJ_P0085085 Ticrr protein_coding protein_coding MGP_C57BL6NJ_T0085086.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84762208 84763660 + Ticrr protein_coding retained_intron MGP_C57BL6NJ_T0085087.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84762217 84802390 + MGP_C57BL6NJ_P0085087 Ticrr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085088.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84762231 84787912 + MGP_C57BL6NJ_P0085088 Ticrr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085089.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84762233 84798189 + MGP_C57BL6NJ_P0085089 Ticrr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085090.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84771728 84777905 + Ticrr protein_coding processed_transcript MGP_C57BL6NJ_T0085091.1 MGP_C57BL6NJ_G0032874.1 mouse_genomes_project 7 84773112 84777905 + Ticrr protein_coding retained_intron MGP_C57BL6NJ_T0011077.1 MGP_C57BL6NJ_G0009162.1 mouse_genomes_project 7 103435 103517 + Mir291a miRNA miRNA MGP_C57BL6NJ_T0086304.1 MGP_C57BL6NJ_G0033299.1 mouse_genomes_project 7 115984096 115986386 + MGP_C57BL6NJ_P0086304 Olfr477 protein_coding protein_coding MGP_C57BL6NJ_T0086036.1 MGP_C57BL6NJ_G0033147.1 mouse_genomes_project 7 110701016 110706699 + MGP_C57BL6NJ_P0086036 Olfr613 protein_coding protein_coding MGP_C57BL6NJ_T0085976.1 MGP_C57BL6NJ_G0033091.1 mouse_genomes_project 7 109271226 109451833 + MGP_C57BL6NJ_P0085976 Stim1 protein_coding protein_coding MGP_C57BL6NJ_T0086040.1 MGP_C57BL6NJ_G0033151.1 mouse_genomes_project 7 110759579 110760542 + MGP_C57BL6NJ_P0086040 Olfr619 protein_coding protein_coding MGP_C57BL6NJ_T0086153.1 MGP_C57BL6NJ_G0033241.1 mouse_genomes_project 7 112936021 112939211 + MGP_C57BL6NJ_P0086153 Gm5901 protein_coding protein_coding MGP_C57BL6NJ_T0005410.1 MGP_C57BL6NJ_G0004594.1 mouse_genomes_project 7 95483245 95484607 + Prss23os antisense antisense MGP_C57BL6NJ_T0005411.1 MGP_C57BL6NJ_G0004594.1 mouse_genomes_project 7 95483261 95483730 + Prss23os antisense antisense MGP_C57BL6NJ_T0083993.1 MGP_C57BL6NJ_G0032604.1 mouse_genomes_project 7 45743462 45748565 - MGP_C57BL6NJ_P0083993 Cd33 protein_coding protein_coding MGP_C57BL6NJ_T0083994.1 MGP_C57BL6NJ_G0032604.1 mouse_genomes_project 7 45743993 45748142 - MGP_C57BL6NJ_P0083994 Cd33 protein_coding protein_coding MGP_C57BL6NJ_T0083995.1 MGP_C57BL6NJ_G0032604.1 mouse_genomes_project 7 45744329 45748879 - MGP_C57BL6NJ_P0083995 Cd33 protein_coding protein_coding MGP_C57BL6NJ_T0083996.1 MGP_C57BL6NJ_G0032604.1 mouse_genomes_project 7 45745819 45748551 - Cd33 protein_coding retained_intron MGP_C57BL6NJ_T0083997.1 MGP_C57BL6NJ_G0032604.1 mouse_genomes_project 7 45747506 45748418 - Cd33 protein_coding processed_transcript MGP_C57BL6NJ_T0082281.1 MGP_C57BL6NJ_G0032155.1 mouse_genomes_project 7 14912328 14915039 + MGP_C57BL6NJ_P0082281 Tmem160 protein_coding protein_coding MGP_C57BL6NJ_T0016328.1 MGP_C57BL6NJ_G0014373.1 mouse_genomes_project 7 103991726 103991914 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0081958.1 MGP_C57BL6NJ_G0032026.1 mouse_genomes_project 7 2098044 2123396 + MGP_C57BL6NJ_P0081958 U2af2 protein_coding protein_coding MGP_C57BL6NJ_T0081959.1 MGP_C57BL6NJ_G0032026.1 mouse_genomes_project 7 2104502 2123383 + MGP_C57BL6NJ_P0081959 U2af2 protein_coding protein_coding MGP_C57BL6NJ_T0103528.1 MGP_C57BL6NJ_G0041320.1 mouse_genomes_project 7 110319943 110320870 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016341.1 MGP_C57BL6NJ_G0014386.1 mouse_genomes_project 7 110213121 110213422 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082527.1 MGP_C57BL6NJ_G0032232.1 mouse_genomes_project 7 18472901 18476271 + MGP_C57BL6NJ_P0082527 Zfp296 protein_coding protein_coding MGP_C57BL6NJ_T0086323.1 MGP_C57BL6NJ_G0033318.1 mouse_genomes_project 7 116673646 116674597 + MGP_C57BL6NJ_P0086323 Olfr507 protein_coding protein_coding MGP_C57BL6NJ_T0011164.1 MGP_C57BL6NJ_G0009249.1 mouse_genomes_project 7 86857398 86857471 + Mir1839 miRNA miRNA MGP_C57BL6NJ_T0087493.1 MGP_C57BL6NJ_G0033562.1 mouse_genomes_project 7 137550984 137558069 + MGP_C57BL6NJ_P0087493 Trim72 protein_coding protein_coding MGP_C57BL6NJ_T0087494.1 MGP_C57BL6NJ_G0033562.1 mouse_genomes_project 7 137551413 137557712 + MGP_C57BL6NJ_P0087494 Trim72 protein_coding protein_coding MGP_C57BL6NJ_T0086132.1 MGP_C57BL6NJ_G0033221.1 mouse_genomes_project 7 112425009 112425948 - MGP_C57BL6NJ_P0086132 Olfr670 protein_coding protein_coding MGP_C57BL6NJ_T0100602.1 MGP_C57BL6NJ_G0038648.1 mouse_genomes_project 7 97812396 97812541 - Gm23928 snRNA snRNA MGP_C57BL6NJ_T0087663.1 MGP_C57BL6NJ_G0033592.1 mouse_genomes_project 7 140970218 141053024 + MGP_C57BL6NJ_P0087663 5430419D17Rik protein_coding protein_coding MGP_C57BL6NJ_T0087664.1 MGP_C57BL6NJ_G0033592.1 mouse_genomes_project 7 141008981 141034794 + 5430419D17Rik protein_coding retained_intron MGP_C57BL6NJ_T0087303.1 MGP_C57BL6NJ_G0033529.1 mouse_genomes_project 7 136865198 136873823 - MGP_C57BL6NJ_P0087303 Zfp747 protein_coding protein_coding MGP_C57BL6NJ_T0016236.1 MGP_C57BL6NJ_G0014281.1 mouse_genomes_project 7 42707622 42708423 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086963.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135715505 135721266 - MGP_C57BL6NJ_P0086963 Lat protein_coding protein_coding MGP_C57BL6NJ_T0086964.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135715508 135721259 - MGP_C57BL6NJ_P0086964 Lat protein_coding protein_coding MGP_C57BL6NJ_T0086965.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135715585 135716568 - Lat protein_coding retained_intron MGP_C57BL6NJ_T0086966.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135719242 135721295 - Lat protein_coding retained_intron MGP_C57BL6NJ_T0086967.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135719823 135721219 - MGP_C57BL6NJ_P0086967 Lat protein_coding protein_coding MGP_C57BL6NJ_T0086968.1 MGP_C57BL6NJ_G0033469.1 mouse_genomes_project 7 135720381 135721065 - Lat protein_coding retained_intron MGP_C57BL6NJ_T0002429.1 MGP_C57BL6NJ_G0002318.1 mouse_genomes_project 7 98872430 98876075 + TEC TEC MGP_C57BL6NJ_T0088379.1 MGP_C57BL6NJ_G0033766.1 mouse_genomes_project 7 154129641 154169053 + MGP_C57BL6NJ_P0088379 Slc22a18 protein_coding protein_coding MGP_C57BL6NJ_T0088380.1 MGP_C57BL6NJ_G0033766.1 mouse_genomes_project 7 154142002 154146015 + Slc22a18 protein_coding processed_transcript MGP_C57BL6NJ_T0088381.1 MGP_C57BL6NJ_G0033766.1 mouse_genomes_project 7 154142049 154166772 + MGP_C57BL6NJ_P0088381 Slc22a18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088382.1 MGP_C57BL6NJ_G0033766.1 mouse_genomes_project 7 154142061 154169055 + MGP_C57BL6NJ_P0088382 Slc22a18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088383.1 MGP_C57BL6NJ_G0033766.1 mouse_genomes_project 7 154142086 154166773 + MGP_C57BL6NJ_P0088383 Slc22a18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086165.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174419 113198219 - MGP_C57BL6NJ_P0086165 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086166.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174420 113197844 - MGP_C57BL6NJ_P0086166 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086167.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174420 113185957 - MGP_C57BL6NJ_P0086167 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086168.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174420 113186173 - MGP_C57BL6NJ_P0086168 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086169.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174420 113185437 - MGP_C57BL6NJ_P0086169 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086170.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174422 113197807 - MGP_C57BL6NJ_P0086170 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086171.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174423 113185616 - Apbb1 protein_coding retained_intron MGP_C57BL6NJ_T0086172.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174439 113198057 - MGP_C57BL6NJ_P0086172 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086173.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174459 113185952 - MGP_C57BL6NJ_P0086173 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086174.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113174754 113185437 - MGP_C57BL6NJ_P0086174 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086175.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113175097 113182165 - Apbb1 protein_coding retained_intron MGP_C57BL6NJ_T0086176.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113175404 113183954 - Apbb1 protein_coding retained_intron MGP_C57BL6NJ_T0086177.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113182249 113197758 - MGP_C57BL6NJ_P0086177 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086178.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113182766 113185623 - MGP_C57BL6NJ_P0086178 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086179.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113183209 113185925 - MGP_C57BL6NJ_P0086179 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086180.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113183324 113185933 - MGP_C57BL6NJ_P0086180 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086181.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113183753 113186252 - MGP_C57BL6NJ_P0086181 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0086182.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113183827 113185330 - Apbb1 protein_coding retained_intron MGP_C57BL6NJ_T0086183.1 MGP_C57BL6NJ_G0033246.1 mouse_genomes_project 7 113190530 113197754 - MGP_C57BL6NJ_P0086183 Apbb1 protein_coding protein_coding MGP_C57BL6NJ_T0018800.1 MGP_C57BL6NJ_G0016051.1 mouse_genomes_project 7 27218244 27219913 - Gm44685 processed_transcript processed_transcript MGP_C57BL6NJ_T0084439.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48364864 48385261 + MGP_C57BL6NJ_P0084439 Lmtk3 protein_coding protein_coding MGP_C57BL6NJ_T0084440.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48364927 48372038 + MGP_C57BL6NJ_P0084440 Lmtk3 protein_coding protein_coding MGP_C57BL6NJ_T0084441.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48365073 48385226 + MGP_C57BL6NJ_P0084441 Lmtk3 protein_coding protein_coding MGP_C57BL6NJ_T0084442.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48366493 48385261 + MGP_C57BL6NJ_P0084442 Lmtk3 protein_coding protein_coding MGP_C57BL6NJ_T0084443.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48366500 48369062 + MGP_C57BL6NJ_P0084443 Lmtk3 protein_coding protein_coding MGP_C57BL6NJ_T0084444.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48366623 48368872 + Lmtk3 protein_coding retained_intron MGP_C57BL6NJ_T0084445.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48367670 48373660 + MGP_C57BL6NJ_P0084445 Lmtk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084446.1 MGP_C57BL6NJ_G0032730.1 mouse_genomes_project 7 48369017 48373699 + MGP_C57BL6NJ_P0084446 Lmtk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016382.1 MGP_C57BL6NJ_G0014427.1 mouse_genomes_project 7 137944579 137944774 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082950.1 MGP_C57BL6NJ_G0032351.1 mouse_genomes_project 7 26669819 26687486 + MGP_C57BL6NJ_P0082950 BC024978 protein_coding protein_coding MGP_C57BL6NJ_T0082951.1 MGP_C57BL6NJ_G0032351.1 mouse_genomes_project 7 26669819 26681579 + MGP_C57BL6NJ_P0082951 BC024978 protein_coding protein_coding MGP_C57BL6NJ_T0082952.1 MGP_C57BL6NJ_G0032351.1 mouse_genomes_project 7 26671161 26681420 + MGP_C57BL6NJ_P0082952 BC024978 protein_coding protein_coding MGP_C57BL6NJ_T0082953.1 MGP_C57BL6NJ_G0032351.1 mouse_genomes_project 7 26679890 26681579 + MGP_C57BL6NJ_P0082953 BC024978 protein_coding protein_coding MGP_C57BL6NJ_T0084984.1 MGP_C57BL6NJ_G0032859.1 mouse_genomes_project 7 81109180 82075099 + MGP_C57BL6NJ_P0084984 Agbl1 protein_coding protein_coding MGP_C57BL6NJ_T0084985.1 MGP_C57BL6NJ_G0032859.1 mouse_genomes_project 7 81299692 81631931 + MGP_C57BL6NJ_P0084985 Agbl1 protein_coding protein_coding MGP_C57BL6NJ_T0084986.1 MGP_C57BL6NJ_G0032859.1 mouse_genomes_project 7 81299692 81704370 + MGP_C57BL6NJ_P0084986 Agbl1 protein_coding protein_coding MGP_C57BL6NJ_T0102556.1 MGP_C57BL6NJ_G0040395.1 mouse_genomes_project 7 29402922 29429372 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102557.1 MGP_C57BL6NJ_G0040395.1 mouse_genomes_project 7 29404858 29422539 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0002410.1 MGP_C57BL6NJ_G0002299.1 mouse_genomes_project 7 82377487 82378342 + TEC TEC MGP_C57BL6NJ_T0083539.1 MGP_C57BL6NJ_G0032493.1 mouse_genomes_project 7 30713545 30746737 + protein_coding processed_transcript MGP_C57BL6NJ_T0083540.1 MGP_C57BL6NJ_G0032493.1 mouse_genomes_project 7 30742361 30746745 + MGP_C57BL6NJ_P0083540 protein_coding protein_coding MGP_C57BL6NJ_T0083541.1 MGP_C57BL6NJ_G0032493.1 mouse_genomes_project 7 30742445 30746745 + MGP_C57BL6NJ_P0083541 protein_coding protein_coding MGP_C57BL6NJ_T0083542.1 MGP_C57BL6NJ_G0032493.1 mouse_genomes_project 7 30742452 30746745 + MGP_C57BL6NJ_P0083542 protein_coding protein_coding MGP_C57BL6NJ_T0083543.1 MGP_C57BL6NJ_G0032493.1 mouse_genomes_project 7 30743343 30746737 + MGP_C57BL6NJ_P0083543 protein_coding protein_coding MGP_C57BL6NJ_T0084713.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 60874157 61320051 + MGP_C57BL6NJ_P0084713 Gabrb3 protein_coding protein_coding MGP_C57BL6NJ_T0084714.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 61049443 61318887 + MGP_C57BL6NJ_P0084714 Gabrb3 protein_coding protein_coding MGP_C57BL6NJ_T0084715.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 61050087 61320055 + MGP_C57BL6NJ_P0084715 Gabrb3 protein_coding protein_coding MGP_C57BL6NJ_T0084716.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 61050098 61249208 + Gabrb3 protein_coding retained_intron MGP_C57BL6NJ_T0084717.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 61050455 61307623 + MGP_C57BL6NJ_P0084717 Gabrb3 protein_coding protein_coding MGP_C57BL6NJ_T0084718.1 MGP_C57BL6NJ_G0032804.1 mouse_genomes_project 7 61277384 61307568 + Gabrb3 protein_coding retained_intron MGP_C57BL6NJ_T0083274.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29125362 29138926 + MGP_C57BL6NJ_P0083274 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083275.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29125387 29139291 + MGP_C57BL6NJ_P0083275 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083276.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29129355 29138558 + MGP_C57BL6NJ_P0083276 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083277.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29129443 29138550 + Dpf1 protein_coding retained_intron MGP_C57BL6NJ_T0083278.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29129443 29138565 + MGP_C57BL6NJ_P0083278 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083279.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29129449 29139287 + Dpf1 protein_coding processed_transcript MGP_C57BL6NJ_T0083280.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29130944 29134789 + MGP_C57BL6NJ_P0083280 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083281.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29131037 29133194 + Dpf1 protein_coding processed_transcript MGP_C57BL6NJ_T0083282.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29134508 29137399 + MGP_C57BL6NJ_P0083282 Dpf1 protein_coding protein_coding MGP_C57BL6NJ_T0083283.1 MGP_C57BL6NJ_G0032432.1 mouse_genomes_project 7 29135804 29138225 + Dpf1 protein_coding retained_intron MGP_C57BL6NJ_T0082133.1 MGP_C57BL6NJ_G0032107.1 mouse_genomes_project 7 10980693 11000141 - MGP_C57BL6NJ_P0082133 Mzf1 protein_coding protein_coding MGP_C57BL6NJ_T0082134.1 MGP_C57BL6NJ_G0032107.1 mouse_genomes_project 7 10981533 10999935 - MGP_C57BL6NJ_P0082134 Mzf1 protein_coding protein_coding MGP_C57BL6NJ_T0082135.1 MGP_C57BL6NJ_G0032107.1 mouse_genomes_project 7 10981537 10999070 - MGP_C57BL6NJ_P0082135 Mzf1 protein_coding protein_coding MGP_C57BL6NJ_T0082136.1 MGP_C57BL6NJ_G0032107.1 mouse_genomes_project 7 10981539 10999727 - Mzf1 protein_coding retained_intron MGP_C57BL6NJ_T0082137.1 MGP_C57BL6NJ_G0032107.1 mouse_genomes_project 7 10988080 11000100 - Mzf1 protein_coding retained_intron MGP_C57BL6NJ_T0082519.1 MGP_C57BL6NJ_G0032229.1 mouse_genomes_project 7 18406878 18413198 + MGP_C57BL6NJ_P0082519 Nkpd1 protein_coding protein_coding MGP_C57BL6NJ_T0086129.1 MGP_C57BL6NJ_G0033218.1 mouse_genomes_project 7 112382320 112383301 - MGP_C57BL6NJ_P0086129 Olfr667 protein_coding protein_coding MGP_C57BL6NJ_T0086319.1 MGP_C57BL6NJ_G0033314.1 mouse_genomes_project 7 116470473 116471418 + MGP_C57BL6NJ_P0086319 Olfr497 protein_coding protein_coding MGP_C57BL6NJ_T0082175.1 MGP_C57BL6NJ_G0032121.1 mouse_genomes_project 7 11644893 11727564 + MGP_C57BL6NJ_P0082175 protein_coding protein_coding MGP_C57BL6NJ_T0009019.1 MGP_C57BL6NJ_G0007286.1 mouse_genomes_project 7 36196029 36202433 - Gm45229 lincRNA lincRNA MGP_C57BL6NJ_T0103500.1 MGP_C57BL6NJ_G0041292.1 mouse_genomes_project 7 91214878 91215180 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083450.1 MGP_C57BL6NJ_G0032475.1 mouse_genomes_project 7 30500689 30515150 - MGP_C57BL6NJ_P0083450 Proser3 protein_coding protein_coding MGP_C57BL6NJ_T0083451.1 MGP_C57BL6NJ_G0032475.1 mouse_genomes_project 7 30500763 30512547 - MGP_C57BL6NJ_P0083451 Proser3 protein_coding protein_coding MGP_C57BL6NJ_T0083452.1 MGP_C57BL6NJ_G0032475.1 mouse_genomes_project 7 30503718 30515178 - Proser3 protein_coding retained_intron MGP_C57BL6NJ_T0083453.1 MGP_C57BL6NJ_G0032475.1 mouse_genomes_project 7 30511920 30515174 - MGP_C57BL6NJ_P0083453 Proser3 protein_coding protein_coding MGP_C57BL6NJ_T0082013.1 MGP_C57BL6NJ_G0032049.1 mouse_genomes_project 7 3697469 3736379 + MGP_C57BL6NJ_P0082013 Gm20715 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103496.1 MGP_C57BL6NJ_G0041288.1 mouse_genomes_project 7 90924055 90925507 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084277.1 MGP_C57BL6NJ_G0032692.1 mouse_genomes_project 7 47716248 47720607 - MGP_C57BL6NJ_P0084277 Dkkl1 protein_coding protein_coding MGP_C57BL6NJ_T0083544.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30757300 30774269 + MGP_C57BL6NJ_P0083544 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0083545.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30757307 30774268 + MGP_C57BL6NJ_P0083545 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0083546.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30757307 30774268 + MGP_C57BL6NJ_P0083546 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0083547.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30757343 30774268 + MGP_C57BL6NJ_P0083547 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0083548.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30758601 30774014 + MGP_C57BL6NJ_P0083548 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0083549.1 MGP_C57BL6NJ_G0032494.1 mouse_genomes_project 7 30769676 30774273 + MGP_C57BL6NJ_P0083549 Dmkn protein_coding protein_coding MGP_C57BL6NJ_T0103393.1 MGP_C57BL6NJ_G0041185.1 mouse_genomes_project 7 31490715 31491972 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086427.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119034835 119036003 - Rnf141 protein_coding retained_intron MGP_C57BL6NJ_T0086428.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119035017 119056498 - MGP_C57BL6NJ_P0086428 Rnf141 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086429.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119047931 119080844 - MGP_C57BL6NJ_P0086429 Rnf141 protein_coding protein_coding MGP_C57BL6NJ_T0086430.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119049984 119080767 - MGP_C57BL6NJ_P0086430 Rnf141 protein_coding protein_coding MGP_C57BL6NJ_T0086431.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119050857 119056444 - MGP_C57BL6NJ_P0086431 Rnf141 protein_coding protein_coding MGP_C57BL6NJ_T0086432.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119050993 119056769 - Rnf141 protein_coding retained_intron MGP_C57BL6NJ_T0086433.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119065970 119080819 - Rnf141 protein_coding processed_transcript MGP_C57BL6NJ_T0086434.1 MGP_C57BL6NJ_G0033354.1 mouse_genomes_project 7 119069079 119080574 - MGP_C57BL6NJ_P0086434 Rnf141 protein_coding protein_coding MGP_C57BL6NJ_T0085683.1 MGP_C57BL6NJ_G0033031.1 mouse_genomes_project 7 106048529 106056288 - MGP_C57BL6NJ_P0085683 Serpinh1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083336.1 MGP_C57BL6NJ_G0032445.1 mouse_genomes_project 7 29931781 29940024 - MGP_C57BL6NJ_P0083336 Zfp14 protein_coding protein_coding MGP_C57BL6NJ_T0083926.1 MGP_C57BL6NJ_G0032581.1 mouse_genomes_project 7 44207317 44248238 + MGP_C57BL6NJ_P0083926 Vmn2r61 protein_coding protein_coding MGP_C57BL6NJ_T0083927.1 MGP_C57BL6NJ_G0032581.1 mouse_genomes_project 7 44213322 44225108 + Vmn2r61 protein_coding processed_transcript MGP_C57BL6NJ_T0011153.1 MGP_C57BL6NJ_G0009238.1 mouse_genomes_project 7 65882667 65882755 - Gm24923 miRNA miRNA MGP_C57BL6NJ_T0082703.1 MGP_C57BL6NJ_G0032286.1 mouse_genomes_project 7 23726819 23731322 + MGP_C57BL6NJ_P0082703 Lypd3 protein_coding protein_coding MGP_C57BL6NJ_T0083692.1 MGP_C57BL6NJ_G0032525.1 mouse_genomes_project 7 34426200 34428181 - MGP_C57BL6NJ_P0083692 Scgb2b18 protein_coding protein_coding MGP_C57BL6NJ_T0086035.1 MGP_C57BL6NJ_G0033146.1 mouse_genomes_project 7 110674588 110681747 - MGP_C57BL6NJ_P0086035 Olfr611 protein_coding protein_coding MGP_C57BL6NJ_T0103432.1 MGP_C57BL6NJ_G0041224.1 mouse_genomes_project 7 43978903 43983310 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082341.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15507057 15530900 - MGP_C57BL6NJ_P0082341 Ppp5c protein_coding protein_coding MGP_C57BL6NJ_T0082342.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15507520 15509492 - Ppp5c protein_coding retained_intron MGP_C57BL6NJ_T0082343.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15509561 15517879 - Ppp5c protein_coding retained_intron MGP_C57BL6NJ_T0082344.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15510195 15530946 - Ppp5c protein_coding processed_transcript MGP_C57BL6NJ_T0082345.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15510204 15511590 - Ppp5c protein_coding retained_intron MGP_C57BL6NJ_T0082346.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15510998 15530946 - Ppp5c protein_coding processed_transcript MGP_C57BL6NJ_T0082347.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15511022 15512555 - Ppp5c protein_coding retained_intron MGP_C57BL6NJ_T0082348.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15512357 15527833 - Ppp5c protein_coding processed_transcript MGP_C57BL6NJ_T0082349.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15517871 15530702 - Ppp5c protein_coding processed_transcript MGP_C57BL6NJ_T0082350.1 MGP_C57BL6NJ_G0032172.1 mouse_genomes_project 7 15525459 15530876 - Ppp5c protein_coding processed_transcript MGP_C57BL6NJ_T0084053.1 MGP_C57BL6NJ_G0032637.1 mouse_genomes_project 7 46619558 46622110 - MGP_C57BL6NJ_P0084053 protein_coding protein_coding MGP_C57BL6NJ_T0084054.1 MGP_C57BL6NJ_G0032637.1 mouse_genomes_project 7 46619561 46625741 - MGP_C57BL6NJ_P0084054 protein_coding protein_coding MGP_C57BL6NJ_T0084055.1 MGP_C57BL6NJ_G0032637.1 mouse_genomes_project 7 46619561 46625723 - MGP_C57BL6NJ_P0084055 protein_coding protein_coding MGP_C57BL6NJ_T0002357.1 MGP_C57BL6NJ_G0002247.1 mouse_genomes_project 7 39001801 39005059 - TEC TEC MGP_C57BL6NJ_T0083517.1 MGP_C57BL6NJ_G0032485.1 mouse_genomes_project 7 30607576 30609811 - MGP_C57BL6NJ_P0083517 Etv2 protein_coding protein_coding MGP_C57BL6NJ_T0084589.1 MGP_C57BL6NJ_G0032778.1 mouse_genomes_project 7 51699170 51713766 + Zdhhc13 protein_coding processed_transcript MGP_C57BL6NJ_T0084590.1 MGP_C57BL6NJ_G0032778.1 mouse_genomes_project 7 51699249 51738132 + MGP_C57BL6NJ_P0084590 Zdhhc13 protein_coding protein_coding MGP_C57BL6NJ_T0085418.1 MGP_C57BL6NJ_G0032961.1 mouse_genomes_project 7 92207739 92218907 + MGP_C57BL6NJ_P0085418 Olfr301 protein_coding protein_coding MGP_C57BL6NJ_T0086778.1 MGP_C57BL6NJ_G0033431.1 mouse_genomes_project 7 129945667 129978981 + MGP_C57BL6NJ_P0086778 Mfsd13b protein_coding protein_coding MGP_C57BL6NJ_T0086779.1 MGP_C57BL6NJ_G0033431.1 mouse_genomes_project 7 129945683 129954635 + MGP_C57BL6NJ_P0086779 Mfsd13b protein_coding protein_coding MGP_C57BL6NJ_T0086780.1 MGP_C57BL6NJ_G0033431.1 mouse_genomes_project 7 129945686 129952236 + MGP_C57BL6NJ_P0086780 Mfsd13b protein_coding protein_coding MGP_C57BL6NJ_T0086781.1 MGP_C57BL6NJ_G0033431.1 mouse_genomes_project 7 129954989 129978981 + MGP_C57BL6NJ_P0086781 Mfsd13b protein_coding protein_coding MGP_C57BL6NJ_T0005353.1 MGP_C57BL6NJ_G0004553.1 mouse_genomes_project 7 31226322 31235668 + Gm10640 antisense antisense MGP_C57BL6NJ_T0005354.1 MGP_C57BL6NJ_G0004553.1 mouse_genomes_project 7 31234475 31244506 + Gm10640 antisense antisense MGP_C57BL6NJ_T0086205.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263401 113266979 + MGP_C57BL6NJ_P0086205 protein_coding protein_coding MGP_C57BL6NJ_T0086206.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263793 113265189 + MGP_C57BL6NJ_P0086206 protein_coding protein_coding MGP_C57BL6NJ_T0086207.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263897 113276630 + MGP_C57BL6NJ_P0086207 protein_coding protein_coding MGP_C57BL6NJ_T0086209.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263909 113265131 + protein_coding retained_intron MGP_C57BL6NJ_T0086210.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263909 113278157 + MGP_C57BL6NJ_P0086210 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086211.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263912 113265185 + MGP_C57BL6NJ_P0086211 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086212.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263915 113282226 + MGP_C57BL6NJ_P0086212 protein_coding protein_coding MGP_C57BL6NJ_T0086213.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263916 113266974 + MGP_C57BL6NJ_P0086213 protein_coding protein_coding MGP_C57BL6NJ_T0086215.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263934 113265095 + protein_coding processed_transcript MGP_C57BL6NJ_T0086216.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113263935 113265171 + MGP_C57BL6NJ_P0086216 protein_coding protein_coding MGP_C57BL6NJ_T0086217.1 MGP_C57BL6NJ_G0033250.1 mouse_genomes_project 7 113264016 113264630 + protein_coding retained_intron MGP_C57BL6NJ_T0016379.1 MGP_C57BL6NJ_G0014424.1 mouse_genomes_project 7 137567432 137568211 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087774.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143733527 143797395 - MGP_C57BL6NJ_P0087774 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0087775.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143733531 143779880 - Dhx32 protein_coding processed_transcript MGP_C57BL6NJ_T0087776.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143733695 143805062 - MGP_C57BL6NJ_P0087776 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0087777.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143733813 143779292 - MGP_C57BL6NJ_P0087777 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0087778.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143735629 143746170 - Dhx32 protein_coding processed_transcript MGP_C57BL6NJ_T0087779.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143768257 143779083 - Dhx32 protein_coding processed_transcript MGP_C57BL6NJ_T0087780.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143768557 143779440 - MGP_C57BL6NJ_P0087780 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0087781.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143768702 143797279 - MGP_C57BL6NJ_P0087781 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0087782.1 MGP_C57BL6NJ_G0033619.1 mouse_genomes_project 7 143779288 143797101 - MGP_C57BL6NJ_P0087782 Dhx32 protein_coding protein_coding MGP_C57BL6NJ_T0101881.1 MGP_C57BL6NJ_G0039927.1 mouse_genomes_project 7 104129951 104130060 + Gm24412 snoRNA snoRNA MGP_C57BL6NJ_T0083685.1 MGP_C57BL6NJ_G0032521.1 mouse_genomes_project 7 34285257 34287224 - MGP_C57BL6NJ_P0083685 protein_coding protein_coding MGP_C57BL6NJ_T0083686.1 MGP_C57BL6NJ_G0032521.1 mouse_genomes_project 7 34285257 34287235 - MGP_C57BL6NJ_P0083686 protein_coding protein_coding MGP_C57BL6NJ_T0083690.1 MGP_C57BL6NJ_G0032521.1 mouse_genomes_project 7 34285265 34287226 - MGP_C57BL6NJ_P0083690 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084398.1 MGP_C57BL6NJ_G0032718.1 mouse_genomes_project 7 48181655 48193259 + MGP_C57BL6NJ_P0084398 Rasip1 protein_coding protein_coding MGP_C57BL6NJ_T0011169.1 MGP_C57BL6NJ_G0009254.1 mouse_genomes_project 7 107735193 107735297 - Mir3102 miRNA miRNA MGP_C57BL6NJ_T0086149.1 MGP_C57BL6NJ_G0033238.1 mouse_genomes_project 7 112909670 112910639 - MGP_C57BL6NJ_P0086149 Olfr691 protein_coding protein_coding MGP_C57BL6NJ_T0083217.1 MGP_C57BL6NJ_G0032419.1 mouse_genomes_project 7 28775230 28907795 - MGP_C57BL6NJ_P0083217 Ryr1 protein_coding protein_coding MGP_C57BL6NJ_T0082697.1 MGP_C57BL6NJ_G0032283.1 mouse_genomes_project 7 23672325 23675965 - MGP_C57BL6NJ_P0082697 Zfp575 protein_coding protein_coding MGP_C57BL6NJ_T0087448.1 MGP_C57BL6NJ_G0033554.1 mouse_genomes_project 7 137417756 137427020 - MGP_C57BL6NJ_P0087448 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082022.1 MGP_C57BL6NJ_G0032057.1 mouse_genomes_project 7 3866929 3867856 + MGP_C57BL6NJ_P0082022 Olfr1350 protein_coding protein_coding MGP_C57BL6NJ_T0086006.1 MGP_C57BL6NJ_G0033119.1 mouse_genomes_project 7 110005153 110006194 + MGP_C57BL6NJ_P0086006 Olfr574 protein_coding protein_coding MGP_C57BL6NJ_T0086370.1 MGP_C57BL6NJ_G0033339.1 mouse_genomes_project 7 117846109 117857531 - MGP_C57BL6NJ_P0086370 BC051019 protein_coding protein_coding MGP_C57BL6NJ_T0086371.1 MGP_C57BL6NJ_G0033339.1 mouse_genomes_project 7 117846112 117857595 - MGP_C57BL6NJ_P0086371 BC051019 protein_coding protein_coding MGP_C57BL6NJ_T0086372.1 MGP_C57BL6NJ_G0033339.1 mouse_genomes_project 7 117849836 117854911 - MGP_C57BL6NJ_P0086372 BC051019 protein_coding protein_coding MGP_C57BL6NJ_T0088447.1 MGP_C57BL6NJ_G0033782.1 mouse_genomes_project 7 155358392 155363530 - MGP_C57BL6NJ_P0088447 Fadd protein_coding protein_coding MGP_C57BL6NJ_T0087556.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138051392 138073262 - MGP_C57BL6NJ_P0087556 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087557.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138051840 138073242 - Tial1 protein_coding retained_intron MGP_C57BL6NJ_T0087558.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053010 138073263 - MGP_C57BL6NJ_P0087558 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087559.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053402 138072913 - MGP_C57BL6NJ_P0087559 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087560.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053816 138056513 - MGP_C57BL6NJ_P0087560 Tial1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087561.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053887 138072799 - MGP_C57BL6NJ_P0087561 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087562.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053887 138072945 - MGP_C57BL6NJ_P0087562 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087563.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053887 138073307 - MGP_C57BL6NJ_P0087563 Tial1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087564.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138053918 138072936 - MGP_C57BL6NJ_P0087564 Tial1 protein_coding protein_coding MGP_C57BL6NJ_T0087565.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138055421 138059954 - MGP_C57BL6NJ_P0087565 Tial1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087566.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138055896 138057313 - Tial1 protein_coding retained_intron MGP_C57BL6NJ_T0087567.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138056419 138066630 - MGP_C57BL6NJ_P0087567 Tial1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087568.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138058370 138060178 - Tial1 protein_coding retained_intron MGP_C57BL6NJ_T0087569.1 MGP_C57BL6NJ_G0033576.1 mouse_genomes_project 7 138059455 138060486 - Tial1 protein_coding retained_intron MGP_C57BL6NJ_T0100569.1 MGP_C57BL6NJ_G0038615.1 mouse_genomes_project 7 10856542 10856649 + Gm26325 snRNA snRNA MGP_C57BL6NJ_T0082355.1 MGP_C57BL6NJ_G0032174.1 mouse_genomes_project 7 15584466 15607355 + MGP_C57BL6NJ_P0082355 Psg16 protein_coding protein_coding MGP_C57BL6NJ_T0082356.1 MGP_C57BL6NJ_G0032174.1 mouse_genomes_project 7 15584543 15604004 + Psg16 protein_coding retained_intron MGP_C57BL6NJ_T0082357.1 MGP_C57BL6NJ_G0032174.1 mouse_genomes_project 7 15596427 15602481 + MGP_C57BL6NJ_P0082357 Psg16 protein_coding protein_coding MGP_C57BL6NJ_T0081953.1 MGP_C57BL6NJ_G0032021.1 mouse_genomes_project 7 2068641 2069770 + MGP_C57BL6NJ_P0081953 protein_coding protein_coding MGP_C57BL6NJ_T0084319.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47895530 47917749 - MGP_C57BL6NJ_P0084319 Snrnp70 protein_coding protein_coding MGP_C57BL6NJ_T0084320.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47895536 47902963 - MGP_C57BL6NJ_P0084320 Snrnp70 protein_coding protein_coding MGP_C57BL6NJ_T0084321.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47895539 47917665 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084322.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47895540 47917699 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084323.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47896223 47914328 - MGP_C57BL6NJ_P0084323 Snrnp70 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084324.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47900430 47903352 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084325.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47902617 47916806 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084326.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47902785 47908064 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084327.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47902835 47917183 - MGP_C57BL6NJ_P0084327 Snrnp70 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084328.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47902850 47917205 - MGP_C57BL6NJ_P0084328 Snrnp70 protein_coding protein_coding MGP_C57BL6NJ_T0084329.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47907242 47916726 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084330.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47907683 47917716 - MGP_C57BL6NJ_P0084330 Snrnp70 protein_coding protein_coding MGP_C57BL6NJ_T0084331.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47907727 47914785 - Snrnp70 protein_coding processed_transcript MGP_C57BL6NJ_T0084332.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47911281 47914891 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0084333.1 MGP_C57BL6NJ_G0032700.1 mouse_genomes_project 7 47913830 47917564 - Snrnp70 protein_coding retained_intron MGP_C57BL6NJ_T0009220.1 MGP_C57BL6NJ_G0007419.1 mouse_genomes_project 7 136487860 136492190 + lincRNA lincRNA MGP_C57BL6NJ_T0016303.1 MGP_C57BL6NJ_G0014348.1 mouse_genomes_project 7 80621620 80621972 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103488.1 MGP_C57BL6NJ_G0041280.1 mouse_genomes_project 7 90353662 90354187 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0008976.1 MGP_C57BL6NJ_G0007248.1 mouse_genomes_project 7 51 15569 + lincRNA lincRNA MGP_C57BL6NJ_T0082351.1 MGP_C57BL6NJ_G0032173.1 mouse_genomes_project 7 15534478 15565514 - MGP_C57BL6NJ_P0082351 Hif3a protein_coding protein_coding MGP_C57BL6NJ_T0082352.1 MGP_C57BL6NJ_G0032173.1 mouse_genomes_project 7 15538705 15559603 - MGP_C57BL6NJ_P0082352 Hif3a protein_coding protein_coding MGP_C57BL6NJ_T0082353.1 MGP_C57BL6NJ_G0032173.1 mouse_genomes_project 7 15551800 15553558 - MGP_C57BL6NJ_P0082353 Hif3a protein_coding protein_coding MGP_C57BL6NJ_T0082354.1 MGP_C57BL6NJ_G0032173.1 mouse_genomes_project 7 15554900 15565471 - MGP_C57BL6NJ_P0082354 Hif3a protein_coding protein_coding MGP_C57BL6NJ_T0016290.1 MGP_C57BL6NJ_G0014335.1 mouse_genomes_project 7 73523577 73524580 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085678.1 MGP_C57BL6NJ_G0033030.1 mouse_genomes_project 7 105968219 106040466 + MGP_C57BL6NJ_P0085678 Map6 protein_coding protein_coding MGP_C57BL6NJ_T0085679.1 MGP_C57BL6NJ_G0033030.1 mouse_genomes_project 7 105968219 106040466 + MGP_C57BL6NJ_P0085679 Map6 protein_coding protein_coding MGP_C57BL6NJ_T0085680.1 MGP_C57BL6NJ_G0033030.1 mouse_genomes_project 7 105968261 106023984 + Map6 protein_coding retained_intron MGP_C57BL6NJ_T0085681.1 MGP_C57BL6NJ_G0033030.1 mouse_genomes_project 7 105969118 106040467 + MGP_C57BL6NJ_P0085681 Map6 protein_coding protein_coding MGP_C57BL6NJ_T0085682.1 MGP_C57BL6NJ_G0033030.1 mouse_genomes_project 7 106024831 106026087 + Map6 protein_coding processed_transcript MGP_C57BL6NJ_T0103525.1 MGP_C57BL6NJ_G0041317.1 mouse_genomes_project 7 110211754 110212702 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005442.1 MGP_C57BL6NJ_G0004614.1 mouse_genomes_project 7 130453157 130584881 - 4933432K03Rik antisense antisense MGP_C57BL6NJ_T0005443.1 MGP_C57BL6NJ_G0004614.1 mouse_genomes_project 7 130551055 130584883 - 4933432K03Rik antisense antisense MGP_C57BL6NJ_T0005444.1 MGP_C57BL6NJ_G0004614.1 mouse_genomes_project 7 130584322 130604204 - 4933432K03Rik antisense antisense MGP_C57BL6NJ_T0011945.1 MGP_C57BL6NJ_G0010030.1 mouse_genomes_project 7 25216577 25216684 + Gm23921 misc_RNA misc_RNA MGP_C57BL6NJ_T0082717.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065652 24073828 + MGP_C57BL6NJ_P0082717 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082718.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065914 24073828 + MGP_C57BL6NJ_P0082718 Rps19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082719.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065916 24071749 + Rps19 protein_coding retained_intron MGP_C57BL6NJ_T0082720.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065917 24073824 + MGP_C57BL6NJ_P0082720 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082721.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065932 24072940 + MGP_C57BL6NJ_P0082721 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082722.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24065995 24073828 + MGP_C57BL6NJ_P0082722 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082723.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24066094 24072920 + MGP_C57BL6NJ_P0082723 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082724.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24066198 24072962 + MGP_C57BL6NJ_P0082724 Rps19 protein_coding protein_coding MGP_C57BL6NJ_T0082725.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24072179 24073826 + Rps19 protein_coding retained_intron MGP_C57BL6NJ_T0082726.1 MGP_C57BL6NJ_G0032294.1 mouse_genomes_project 7 24072729 24073826 + Rps19 protein_coding processed_transcript MGP_C57BL6NJ_T0084165.1 MGP_C57BL6NJ_G0032656.1 mouse_genomes_project 7 47045031 47110459 - MGP_C57BL6NJ_P0084165 protein_coding protein_coding MGP_C57BL6NJ_T0009174.1 MGP_C57BL6NJ_G0007394.1 mouse_genomes_project 7 118162567 118170822 - lincRNA lincRNA MGP_C57BL6NJ_T0009175.1 MGP_C57BL6NJ_G0007394.1 mouse_genomes_project 7 118162595 118163425 - lincRNA lincRNA MGP_C57BL6NJ_T0009176.1 MGP_C57BL6NJ_G0007394.1 mouse_genomes_project 7 118162603 118328188 - lincRNA lincRNA MGP_C57BL6NJ_T0009177.1 MGP_C57BL6NJ_G0007394.1 mouse_genomes_project 7 118165331 118170807 - lincRNA lincRNA MGP_C57BL6NJ_T0082361.1 MGP_C57BL6NJ_G0032178.1 mouse_genomes_project 7 16458859 16461890 + MGP_C57BL6NJ_P0082361 Ceacam14 protein_coding protein_coding MGP_C57BL6NJ_T0084259.1 MGP_C57BL6NJ_G0032685.1 mouse_genomes_project 7 47636084 47641264 - MGP_C57BL6NJ_P0084259 protein_coding protein_coding MGP_C57BL6NJ_T0005324.1 MGP_C57BL6NJ_G0004531.1 mouse_genomes_project 7 23121653 23125800 - Gm44793 antisense antisense MGP_C57BL6NJ_T0011142.1 MGP_C57BL6NJ_G0009227.1 mouse_genomes_project 7 65495677 65495775 - Gm23917 miRNA miRNA MGP_C57BL6NJ_T0084843.1 MGP_C57BL6NJ_G0032832.1 mouse_genomes_project 7 70201068 70211730 + MGP_C57BL6NJ_P0084843 Vimp protein_coding protein_coding MGP_C57BL6NJ_T0084844.1 MGP_C57BL6NJ_G0032832.1 mouse_genomes_project 7 70201096 70209774 + Vimp protein_coding retained_intron MGP_C57BL6NJ_T0084845.1 MGP_C57BL6NJ_G0032832.1 mouse_genomes_project 7 70201097 70211728 + MGP_C57BL6NJ_P0084845 Vimp protein_coding protein_coding MGP_C57BL6NJ_T0084846.1 MGP_C57BL6NJ_G0032832.1 mouse_genomes_project 7 70201106 70211445 + MGP_C57BL6NJ_P0084846 Vimp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084847.1 MGP_C57BL6NJ_G0032832.1 mouse_genomes_project 7 70201133 70211171 + MGP_C57BL6NJ_P0084847 Vimp protein_coding protein_coding MGP_C57BL6NJ_T0016308.1 MGP_C57BL6NJ_G0014353.1 mouse_genomes_project 7 86165759 86166083 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005355.1 MGP_C57BL6NJ_G0004554.1 mouse_genomes_project 7 35208123 35217593 + Gm12758 antisense antisense MGP_C57BL6NJ_T0005356.1 MGP_C57BL6NJ_G0004554.1 mouse_genomes_project 7 35208187 35209299 + Gm12758 antisense antisense MGP_C57BL6NJ_T0011096.1 MGP_C57BL6NJ_G0009181.1 mouse_genomes_project 7 18260117 18260192 + Mir343 miRNA miRNA MGP_C57BL6NJ_T0081664.1 MGP_C57BL6NJ_G0031959.1 mouse_genomes_project 7 193716 208832 + Prkcg protein_coding processed_transcript MGP_C57BL6NJ_T0081669.1 MGP_C57BL6NJ_G0031959.1 mouse_genomes_project 7 208042 236931 + MGP_C57BL6NJ_P0081669 Prkcg protein_coding protein_coding MGP_C57BL6NJ_T0081670.1 MGP_C57BL6NJ_G0031959.1 mouse_genomes_project 7 208165 236199 + MGP_C57BL6NJ_P0081670 Prkcg protein_coding protein_coding MGP_C57BL6NJ_T0081671.1 MGP_C57BL6NJ_G0031959.1 mouse_genomes_project 7 209848 223493 + MGP_C57BL6NJ_P0081671 Prkcg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081672.1 MGP_C57BL6NJ_G0031959.1 mouse_genomes_project 7 234669 235852 + Prkcg protein_coding retained_intron MGP_C57BL6NJ_T0008989.1 MGP_C57BL6NJ_G0007259.1 mouse_genomes_project 7 17788170 17790960 - Gm26821 lincRNA lincRNA MGP_C57BL6NJ_T0002436.1 MGP_C57BL6NJ_G0002325.1 mouse_genomes_project 7 131142262 131145091 + TEC TEC MGP_C57BL6NJ_T0005435.1 MGP_C57BL6NJ_G0004609.1 mouse_genomes_project 7 124514036 124533974 + Gm45025 antisense antisense MGP_C57BL6NJ_T0084255.1 MGP_C57BL6NJ_G0032682.1 mouse_genomes_project 7 47595921 47606634 - MGP_C57BL6NJ_P0084255 Fcgrt protein_coding protein_coding MGP_C57BL6NJ_T0086682.1 MGP_C57BL6NJ_G0033405.1 mouse_genomes_project 7 128280591 128318338 - MGP_C57BL6NJ_P0086682 Pdilt protein_coding protein_coding MGP_C57BL6NJ_T0087638.1 MGP_C57BL6NJ_G0033586.1 mouse_genomes_project 7 140309680 140427983 + MGP_C57BL6NJ_P0087638 Tacc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087639.1 MGP_C57BL6NJ_G0033586.1 mouse_genomes_project 7 140309680 140509251 + MGP_C57BL6NJ_P0087639 Tacc2 protein_coding protein_coding MGP_C57BL6NJ_T0087640.1 MGP_C57BL6NJ_G0033586.1 mouse_genomes_project 7 140309680 140509249 + MGP_C57BL6NJ_P0087640 Tacc2 protein_coding protein_coding MGP_C57BL6NJ_T0087641.1 MGP_C57BL6NJ_G0033586.1 mouse_genomes_project 7 140435244 140509251 + MGP_C57BL6NJ_P0087641 Tacc2 protein_coding protein_coding MGP_C57BL6NJ_T0087642.1 MGP_C57BL6NJ_G0033586.1 mouse_genomes_project 7 140436490 140509233 + MGP_C57BL6NJ_P0087642 Tacc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0082876.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25086862 25117694 - MGP_C57BL6NJ_P0082876 Axl protein_coding protein_coding MGP_C57BL6NJ_T0082877.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25087219 25117712 - MGP_C57BL6NJ_P0082877 Axl protein_coding protein_coding MGP_C57BL6NJ_T0082878.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25090267 25093643 - Axl protein_coding retained_intron MGP_C57BL6NJ_T0082879.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25090958 25093992 - Axl protein_coding retained_intron MGP_C57BL6NJ_T0082880.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25093372 25117707 - Axl protein_coding retained_intron MGP_C57BL6NJ_T0082881.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25096096 25104252 - MGP_C57BL6NJ_P0082881 Axl protein_coding protein_coding MGP_C57BL6NJ_T0082882.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25108069 25116036 - Axl protein_coding retained_intron MGP_C57BL6NJ_T0082883.1 MGP_C57BL6NJ_G0032327.1 mouse_genomes_project 7 25114903 25116542 - Axl protein_coding retained_intron MGP_C57BL6NJ_T0011146.1 MGP_C57BL6NJ_G0009231.1 mouse_genomes_project 7 65517962 65518032 - Gm23873 miRNA miRNA MGP_C57BL6NJ_T0087588.1 MGP_C57BL6NJ_G0033581.1 mouse_genomes_project 7 138899795 139050952 + MGP_C57BL6NJ_P0087588 Plpp4 protein_coding protein_coding MGP_C57BL6NJ_T0087589.1 MGP_C57BL6NJ_G0033581.1 mouse_genomes_project 7 138899802 138976976 + Plpp4 protein_coding retained_intron MGP_C57BL6NJ_T0087590.1 MGP_C57BL6NJ_G0033581.1 mouse_genomes_project 7 138899811 138961101 + Plpp4 protein_coding processed_transcript MGP_C57BL6NJ_T0087591.1 MGP_C57BL6NJ_G0033581.1 mouse_genomes_project 7 138899813 139050847 + MGP_C57BL6NJ_P0087591 Plpp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087592.1 MGP_C57BL6NJ_G0033581.1 mouse_genomes_project 7 138961080 139050959 + MGP_C57BL6NJ_P0087592 Plpp4 protein_coding protein_coding MGP_C57BL6NJ_T0018798.1 MGP_C57BL6NJ_G0016049.1 mouse_genomes_project 7 26731617 26744085 + Gm44641 processed_transcript processed_transcript MGP_C57BL6NJ_T0084275.1 MGP_C57BL6NJ_G0032691.1 mouse_genomes_project 7 47692486 47713622 - MGP_C57BL6NJ_P0084275 Ccdc155 protein_coding protein_coding MGP_C57BL6NJ_T0084276.1 MGP_C57BL6NJ_G0032691.1 mouse_genomes_project 7 47692790 47698903 - Ccdc155 protein_coding retained_intron MGP_C57BL6NJ_T0011157.1 MGP_C57BL6NJ_G0009242.1 mouse_genomes_project 7 68980559 68980637 - Gm25249 miRNA miRNA MGP_C57BL6NJ_T0009096.1 MGP_C57BL6NJ_G0007342.1 mouse_genomes_project 7 76474446 76489320 - Gm36633 lincRNA lincRNA MGP_C57BL6NJ_T0103367.1 MGP_C57BL6NJ_G0041160.1 mouse_genomes_project 7 12901917 12902541 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082858.1 MGP_C57BL6NJ_G0032324.1 mouse_genomes_project 7 25010060 25029369 + MGP_C57BL6NJ_P0082858 Tgfb1 protein_coding protein_coding MGP_C57BL6NJ_T0082859.1 MGP_C57BL6NJ_G0032324.1 mouse_genomes_project 7 25011206 25011783 + Tgfb1 protein_coding processed_transcript MGP_C57BL6NJ_T0082860.1 MGP_C57BL6NJ_G0032324.1 mouse_genomes_project 7 25011948 25014521 + Tgfb1 protein_coding retained_intron MGP_C57BL6NJ_T0082861.1 MGP_C57BL6NJ_G0032324.1 mouse_genomes_project 7 25011985 25021706 + MGP_C57BL6NJ_P0082861 Tgfb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082862.1 MGP_C57BL6NJ_G0032324.1 mouse_genomes_project 7 25015476 25021667 + Tgfb1 protein_coding retained_intron MGP_C57BL6NJ_T0009102.1 MGP_C57BL6NJ_G0007348.1 mouse_genomes_project 7 77744693 77746801 + 4933435G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0011183.1 MGP_C57BL6NJ_G0009268.1 mouse_genomes_project 7 137227744 137227820 + Mir762 miRNA miRNA MGP_C57BL6NJ_T0016370.1 MGP_C57BL6NJ_G0014415.1 mouse_genomes_project 7 135575037 135575285 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0083695.1 MGP_C57BL6NJ_G0032528.1 mouse_genomes_project 7 34435095 34436281 + MGP_C57BL6NJ_P0083695 protein_coding protein_coding MGP_C57BL6NJ_T0087703.1 MGP_C57BL6NJ_G0033608.1 mouse_genomes_project 7 142545284 142565671 + Lhpp protein_coding processed_transcript MGP_C57BL6NJ_T0087704.1 MGP_C57BL6NJ_G0033608.1 mouse_genomes_project 7 142545285 142643211 + MGP_C57BL6NJ_P0087704 Lhpp protein_coding protein_coding MGP_C57BL6NJ_T0087705.1 MGP_C57BL6NJ_G0033608.1 mouse_genomes_project 7 142545313 142607331 + Lhpp protein_coding processed_transcript MGP_C57BL6NJ_T0087706.1 MGP_C57BL6NJ_G0033608.1 mouse_genomes_project 7 142545354 142642568 + Lhpp protein_coding processed_transcript MGP_C57BL6NJ_T0087707.1 MGP_C57BL6NJ_G0033608.1 mouse_genomes_project 7 142565415 142576612 + Lhpp protein_coding retained_intron MGP_C57BL6NJ_T0082521.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18459859 18469447 - MGP_C57BL6NJ_P0082521 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082522.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18459862 18468967 - MGP_C57BL6NJ_P0082522 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082523.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18460000 18468592 - MGP_C57BL6NJ_P0082523 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082524.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18460032 18468713 - MGP_C57BL6NJ_P0082524 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082525.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18460159 18469009 - MGP_C57BL6NJ_P0082525 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082526.1 MGP_C57BL6NJ_G0032231.1 mouse_genomes_project 7 18460337 18468798 - MGP_C57BL6NJ_P0082526 Gemin7 protein_coding protein_coding MGP_C57BL6NJ_T0082305.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15302788 15327820 + MGP_C57BL6NJ_P0082305 Strn4 protein_coding protein_coding MGP_C57BL6NJ_T0082306.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15303216 15327816 + MGP_C57BL6NJ_P0082306 Strn4 protein_coding protein_coding MGP_C57BL6NJ_T0082307.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15303277 15315709 + MGP_C57BL6NJ_P0082307 Strn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082308.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15308943 15311077 + Strn4 protein_coding processed_transcript MGP_C57BL6NJ_T0082309.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15309966 15320870 + MGP_C57BL6NJ_P0082309 Strn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082310.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15310952 15315646 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0082311.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15315673 15318534 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0082312.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15317028 15318404 + Strn4 protein_coding processed_transcript MGP_C57BL6NJ_T0082313.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15317993 15324871 + MGP_C57BL6NJ_P0082313 Strn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082314.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15319508 15320886 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0082315.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15320059 15321547 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0082316.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15323122 15327820 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0082317.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15324523 15327125 + MGP_C57BL6NJ_P0082317 Strn4 protein_coding protein_coding MGP_C57BL6NJ_T0082318.1 MGP_C57BL6NJ_G0032163.1 mouse_genomes_project 7 15325444 15326908 + Strn4 protein_coding retained_intron MGP_C57BL6NJ_T0016324.1 MGP_C57BL6NJ_G0014369.1 mouse_genomes_project 7 101925268 101926716 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0085445.1 MGP_C57BL6NJ_G0032975.1 mouse_genomes_project 7 94205711 94238490 + MGP_C57BL6NJ_P0085445 Ctsc protein_coding protein_coding MGP_C57BL6NJ_T0085446.1 MGP_C57BL6NJ_G0032975.1 mouse_genomes_project 7 94205760 94235625 + MGP_C57BL6NJ_P0085446 Ctsc protein_coding protein_coding MGP_C57BL6NJ_T0085447.1 MGP_C57BL6NJ_G0032975.1 mouse_genomes_project 7 94205764 94209390 + Ctsc protein_coding retained_intron MGP_C57BL6NJ_T0085448.1 MGP_C57BL6NJ_G0032975.1 mouse_genomes_project 7 94205764 94218997 + Ctsc protein_coding retained_intron MGP_C57BL6NJ_T0085449.1 MGP_C57BL6NJ_G0032975.1 mouse_genomes_project 7 94224453 94229902 + Ctsc protein_coding retained_intron MGP_C57BL6NJ_T0016388.1 MGP_C57BL6NJ_G0014433.1 mouse_genomes_project 7 143753611 143758628 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011110.1 MGP_C57BL6NJ_G0009195.1 mouse_genomes_project 7 29623271 29623354 + Mir1964 miRNA miRNA MGP_C57BL6NJ_T0081960.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2123685 2148487 + MGP_C57BL6NJ_P0081960 Epn1 protein_coding protein_coding MGP_C57BL6NJ_T0081961.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2123690 2133343 + MGP_C57BL6NJ_P0081961 Epn1 protein_coding protein_coding MGP_C57BL6NJ_T0081962.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2123718 2127298 + MGP_C57BL6NJ_P0081962 Epn1 protein_coding protein_coding MGP_C57BL6NJ_T0081963.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2123743 2148485 + MGP_C57BL6NJ_P0081963 Epn1 protein_coding protein_coding MGP_C57BL6NJ_T0081964.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2127046 2140769 + Epn1 protein_coding processed_transcript MGP_C57BL6NJ_T0081965.1 MGP_C57BL6NJ_G0032027.1 mouse_genomes_project 7 2133219 2138533 + Epn1 protein_coding retained_intron MGP_C57BL6NJ_T0082220.1 MGP_C57BL6NJ_G0032140.1 mouse_genomes_project 7 14333277 14353916 - MGP_C57BL6NJ_P0082220 Ehd2 protein_coding protein_coding MGP_C57BL6NJ_T0082221.1 MGP_C57BL6NJ_G0032140.1 mouse_genomes_project 7 14344034 14353824 - MGP_C57BL6NJ_P0082221 Ehd2 protein_coding protein_coding MGP_C57BL6NJ_T0086696.1 MGP_C57BL6NJ_G0033410.1 mouse_genomes_project 7 128530261 128535931 - MGP_C57BL6NJ_P0086696 Thumpd1 protein_coding protein_coding MGP_C57BL6NJ_T0011192.1 MGP_C57BL6NJ_G0009277.1 mouse_genomes_project 7 150407308 150407374 - Mir7062 miRNA miRNA MGP_C57BL6NJ_T0009080.1 MGP_C57BL6NJ_G0007331.1 mouse_genomes_project 7 71389022 71409439 - 1700112J16Rik lincRNA lincRNA MGP_C57BL6NJ_T0087198.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136365901 136385748 + MGP_C57BL6NJ_P0087198 Sez6l2 protein_coding protein_coding MGP_C57BL6NJ_T0087199.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136365922 136373422 + MGP_C57BL6NJ_P0087199 Sez6l2 protein_coding protein_coding MGP_C57BL6NJ_T0087200.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136366067 136385738 + MGP_C57BL6NJ_P0087200 Sez6l2 protein_coding protein_coding MGP_C57BL6NJ_T0087201.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136366304 136385412 + MGP_C57BL6NJ_P0087201 Sez6l2 protein_coding protein_coding MGP_C57BL6NJ_T0087202.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136369181 136374588 + MGP_C57BL6NJ_P0087202 Sez6l2 protein_coding protein_coding MGP_C57BL6NJ_T0087203.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136382884 136385412 + Sez6l2 protein_coding retained_intron MGP_C57BL6NJ_T0087204.1 MGP_C57BL6NJ_G0033504.1 mouse_genomes_project 7 136383110 136385746 + MGP_C57BL6NJ_P0087204 Sez6l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088471.1 MGP_C57BL6NJ_G0033791.1 mouse_genomes_project 7 156147016 156160258 + MGP_C57BL6NJ_P0088471 Mrgprd protein_coding protein_coding MGP_C57BL6NJ_T0087452.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137437645 137446531 + MGP_C57BL6NJ_P0087452 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0087453.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137437666 137439526 + Bckdk protein_coding retained_intron MGP_C57BL6NJ_T0087454.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137438203 137439735 + MGP_C57BL6NJ_P0087454 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0087455.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137438325 137442172 + MGP_C57BL6NJ_P0087455 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0087456.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137438325 137442172 + MGP_C57BL6NJ_P0087456 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0087457.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137438480 137439947 + MGP_C57BL6NJ_P0087457 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0087458.1 MGP_C57BL6NJ_G0033556.1 mouse_genomes_project 7 137440803 137442164 + MGP_C57BL6NJ_P0087458 Bckdk protein_coding protein_coding MGP_C57BL6NJ_T0103540.1 MGP_C57BL6NJ_G0041332.1 mouse_genomes_project 7 112047263 112048220 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016329.1 MGP_C57BL6NJ_G0014374.1 mouse_genomes_project 7 104201013 104201723 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086518.1 MGP_C57BL6NJ_G0033373.1 mouse_genomes_project 7 122437321 122516811 - MGP_C57BL6NJ_P0086518 Rras2 protein_coding protein_coding MGP_C57BL6NJ_T0086533.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123055480 123060342 - MGP_C57BL6NJ_P0086533 Calca protein_coding protein_coding MGP_C57BL6NJ_T0086534.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123055570 123056648 - Calca protein_coding retained_intron MGP_C57BL6NJ_T0086535.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123056554 123060292 - MGP_C57BL6NJ_P0086535 Calca protein_coding protein_coding MGP_C57BL6NJ_T0086536.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123057277 123060297 - MGP_C57BL6NJ_P0086536 Calca protein_coding protein_coding MGP_C57BL6NJ_T0086537.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123057394 123060280 - MGP_C57BL6NJ_P0086537 Calca protein_coding protein_coding MGP_C57BL6NJ_T0086538.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123058325 123060291 - MGP_C57BL6NJ_P0086538 Calca protein_coding protein_coding MGP_C57BL6NJ_T0086539.1 MGP_C57BL6NJ_G0033378.1 mouse_genomes_project 7 123058356 123060256 - MGP_C57BL6NJ_P0086539 Calca protein_coding protein_coding MGP_C57BL6NJ_T0002452.1 MGP_C57BL6NJ_G0002341.1 mouse_genomes_project 7 136947781 136949183 + TEC TEC MGP_C57BL6NJ_T0084544.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49511848 49522368 + MGP_C57BL6NJ_P0084544 Ldha protein_coding protein_coding MGP_C57BL6NJ_T0084545.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49516212 49525997 + MGP_C57BL6NJ_P0084545 Ldha protein_coding protein_coding MGP_C57BL6NJ_T0084546.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49516216 49519419 + Ldha protein_coding processed_transcript MGP_C57BL6NJ_T0084547.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49516216 49518519 + Ldha protein_coding retained_intron MGP_C57BL6NJ_T0084548.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49516236 49522377 + MGP_C57BL6NJ_P0084548 Ldha protein_coding protein_coding MGP_C57BL6NJ_T0084549.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49516470 49519425 + Ldha protein_coding processed_transcript MGP_C57BL6NJ_T0084550.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49517504 49525996 + MGP_C57BL6NJ_P0084550 Ldha protein_coding protein_coding MGP_C57BL6NJ_T0084551.1 MGP_C57BL6NJ_G0032755.1 mouse_genomes_project 7 49517878 49521370 + Ldha protein_coding retained_intron MGP_C57BL6NJ_T0086014.1 MGP_C57BL6NJ_G0033126.1 mouse_genomes_project 7 110168141 110169958 + MGP_C57BL6NJ_P0086014 Olfr584 protein_coding protein_coding MGP_C57BL6NJ_T0085717.1 MGP_C57BL6NJ_G0033043.1 mouse_genomes_project 7 106678444 106744630 - MGP_C57BL6NJ_P0085717 Rnf169 protein_coding protein_coding MGP_C57BL6NJ_T0085718.1 MGP_C57BL6NJ_G0033043.1 mouse_genomes_project 7 106694153 106729906 - Rnf169 protein_coding processed_transcript MGP_C57BL6NJ_T0005798.1 MGP_C57BL6NJ_G0004878.1 mouse_genomes_project 7 84342422 84343546 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0005799.1 MGP_C57BL6NJ_G0004878.1 mouse_genomes_project 7 84342426 84343770 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_C57BL6NJ_T0018845.1 MGP_C57BL6NJ_G0016068.1 mouse_genomes_project 7 74771781 74821222 + processed_transcript antisense MGP_C57BL6NJ_T0018846.1 MGP_C57BL6NJ_G0016068.1 mouse_genomes_project 7 74795401 74812620 + processed_transcript antisense MGP_C57BL6NJ_T0018847.1 MGP_C57BL6NJ_G0016068.1 mouse_genomes_project 7 74795401 74821226 + processed_transcript retained_intron MGP_C57BL6NJ_T0018848.1 MGP_C57BL6NJ_G0016068.1 mouse_genomes_project 7 74797251 74797789 + processed_transcript processed_transcript MGP_C57BL6NJ_T0086378.1 MGP_C57BL6NJ_G0033343.1 mouse_genomes_project 7 117942861 118017726 - MGP_C57BL6NJ_P0086378 Scube2 protein_coding protein_coding MGP_C57BL6NJ_T0086379.1 MGP_C57BL6NJ_G0033343.1 mouse_genomes_project 7 117942861 118017792 - MGP_C57BL6NJ_P0086379 Scube2 protein_coding protein_coding MGP_C57BL6NJ_T0086380.1 MGP_C57BL6NJ_G0033343.1 mouse_genomes_project 7 117942993 118017756 - MGP_C57BL6NJ_P0086380 Scube2 protein_coding protein_coding MGP_C57BL6NJ_T0086381.1 MGP_C57BL6NJ_G0033343.1 mouse_genomes_project 7 117943249 117986502 - Scube2 protein_coding processed_transcript MGP_C57BL6NJ_T0086382.1 MGP_C57BL6NJ_G0033343.1 mouse_genomes_project 7 117944805 117952417 - Scube2 protein_coding processed_transcript MGP_C57BL6NJ_T0086037.1 MGP_C57BL6NJ_G0033148.1 mouse_genomes_project 7 110711354 110712296 + MGP_C57BL6NJ_P0086037 Olfr615 protein_coding protein_coding MGP_C57BL6NJ_T0016154.1 MGP_C57BL6NJ_G0014199.1 mouse_genomes_project 7 15126871 15127278 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082591.1 MGP_C57BL6NJ_G0032250.1 mouse_genomes_project 7 18921926 18924379 + MGP_C57BL6NJ_P0082591 protein_coding protein_coding MGP_C57BL6NJ_T0103417.1 MGP_C57BL6NJ_G0041209.1 mouse_genomes_project 7 34824811 34825649 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016363.1 MGP_C57BL6NJ_G0014408.1 mouse_genomes_project 7 131563936 131564177 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009183.1 MGP_C57BL6NJ_G0007399.1 mouse_genomes_project 7 123400184 123445237 + A730082K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009184.1 MGP_C57BL6NJ_G0007399.1 mouse_genomes_project 7 123400222 123413039 + A730082K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009185.1 MGP_C57BL6NJ_G0007399.1 mouse_genomes_project 7 123405644 123434514 + A730082K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009186.1 MGP_C57BL6NJ_G0007399.1 mouse_genomes_project 7 123405659 123434486 + A730082K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009187.1 MGP_C57BL6NJ_G0007399.1 mouse_genomes_project 7 123405677 123444142 + A730082K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0083337.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29950672 29953948 - Zfp82 protein_coding retained_intron MGP_C57BL6NJ_T0083338.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29952212 29970237 - MGP_C57BL6NJ_P0083338 Zfp82 protein_coding protein_coding MGP_C57BL6NJ_T0083340.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29952219 29957491 - Zfp82 protein_coding retained_intron MGP_C57BL6NJ_T0083341.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29952221 29969477 - MGP_C57BL6NJ_P0083341 Zfp82 protein_coding protein_coding MGP_C57BL6NJ_T0083342.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29953454 29970145 - MGP_C57BL6NJ_P0083342 Zfp82 protein_coding protein_coding MGP_C57BL6NJ_T0083343.1 MGP_C57BL6NJ_G0032446.1 mouse_genomes_project 7 29955424 29970163 - MGP_C57BL6NJ_P0083343 Zfp82 protein_coding protein_coding MGP_C57BL6NJ_T0002428.1 MGP_C57BL6NJ_G0002317.1 mouse_genomes_project 7 98869702 98870021 + TEC TEC MGP_C57BL6NJ_T0103321.1 MGP_C57BL6NJ_G0041114.1 mouse_genomes_project 7 7962470 7963377 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086194.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113257548 113263762 - MGP_C57BL6NJ_P0086194 Arfip2 protein_coding protein_coding MGP_C57BL6NJ_T0086195.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113257552 113263260 - Arfip2 protein_coding retained_intron MGP_C57BL6NJ_T0086196.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113258966 113263660 - MGP_C57BL6NJ_P0086196 Arfip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086197.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113258969 113261248 - Arfip2 protein_coding processed_transcript MGP_C57BL6NJ_T0086198.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113259001 113263683 - MGP_C57BL6NJ_P0086198 Arfip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086199.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113259002 113263697 - MGP_C57BL6NJ_P0086199 Arfip2 protein_coding protein_coding MGP_C57BL6NJ_T0086200.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113260247 113261391 - Arfip2 protein_coding processed_transcript MGP_C57BL6NJ_T0086201.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113260465 113261261 - Arfip2 protein_coding processed_transcript MGP_C57BL6NJ_T0086202.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113260533 113263654 - MGP_C57BL6NJ_P0086202 Arfip2 protein_coding protein_coding MGP_C57BL6NJ_T0086203.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113261193 113263681 - MGP_C57BL6NJ_P0086203 Arfip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086204.1 MGP_C57BL6NJ_G0033249.1 mouse_genomes_project 7 113261932 113263686 - Arfip2 protein_coding retained_intron MGP_C57BL6NJ_T0103516.1 MGP_C57BL6NJ_G0041308.1 mouse_genomes_project 7 91958572 91959512 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084907.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863298 71888451 + Ttc23 protein_coding retained_intron MGP_C57BL6NJ_T0084908.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863298 71948119 + MGP_C57BL6NJ_P0084908 Ttc23 protein_coding protein_coding MGP_C57BL6NJ_T0084909.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863313 71948121 + MGP_C57BL6NJ_P0084909 Ttc23 protein_coding protein_coding MGP_C57BL6NJ_T0084910.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863338 71948121 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084911.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863342 71865076 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084912.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71863348 71876630 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084913.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71865038 71897660 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084914.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71871065 71897910 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084915.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71871335 71948118 + MGP_C57BL6NJ_P0084915 Ttc23 protein_coding protein_coding MGP_C57BL6NJ_T0084916.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71876641 71948126 + MGP_C57BL6NJ_P0084916 Ttc23 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084917.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71882674 71885844 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084918.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71885875 71917974 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084919.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71897883 71947597 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084920.1 MGP_C57BL6NJ_G0032843.1 mouse_genomes_project 7 71946805 71947559 + Ttc23 protein_coding processed_transcript MGP_C57BL6NJ_T0084230.1 MGP_C57BL6NJ_G0032669.1 mouse_genomes_project 7 47373881 47406785 - MGP_C57BL6NJ_P0084230 Ap2a1 protein_coding protein_coding MGP_C57BL6NJ_T0084231.1 MGP_C57BL6NJ_G0032669.1 mouse_genomes_project 7 47373881 47406785 - MGP_C57BL6NJ_P0084231 Ap2a1 protein_coding protein_coding MGP_C57BL6NJ_T0084232.1 MGP_C57BL6NJ_G0032669.1 mouse_genomes_project 7 47373881 47406785 - MGP_C57BL6NJ_P0084232 Ap2a1 protein_coding protein_coding MGP_C57BL6NJ_T0084233.1 MGP_C57BL6NJ_G0032669.1 mouse_genomes_project 7 47373881 47406785 - MGP_C57BL6NJ_P0084233 Ap2a1 protein_coding protein_coding MGP_C57BL6NJ_T0087818.1 MGP_C57BL6NJ_G0033634.1 mouse_genomes_project 7 147698002 147731299 + MGP_C57BL6NJ_P0087818 protein_coding protein_coding MGP_C57BL6NJ_T0087819.1 MGP_C57BL6NJ_G0033634.1 mouse_genomes_project 7 147711170 147730688 + MGP_C57BL6NJ_P0087819 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002372.1 MGP_C57BL6NJ_G0002262.1 mouse_genomes_project 7 58239965 58241560 + TEC TEC MGP_C57BL6NJ_T0005320.1 MGP_C57BL6NJ_G0004527.1 mouse_genomes_project 7 18745124 18747388 + Gm16175 antisense antisense MGP_C57BL6NJ_T0084336.1 MGP_C57BL6NJ_G0032703.1 mouse_genomes_project 7 47947278 47948320 + MGP_C57BL6NJ_P0084336 Lhb protein_coding protein_coding MGP_C57BL6NJ_T0086543.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123181930 123231896 + MGP_C57BL6NJ_P0086543 Insc protein_coding protein_coding MGP_C57BL6NJ_T0086544.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123183976 123232174 + MGP_C57BL6NJ_P0086544 Insc protein_coding protein_coding MGP_C57BL6NJ_T0086545.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123184002 123292781 + MGP_C57BL6NJ_P0086545 Insc protein_coding protein_coding MGP_C57BL6NJ_T0086546.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123191955 123208636 + Insc protein_coding retained_intron MGP_C57BL6NJ_T0086547.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123208026 123292784 + MGP_C57BL6NJ_P0086547 Insc protein_coding protein_coding MGP_C57BL6NJ_T0086548.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123208064 123231933 + MGP_C57BL6NJ_P0086548 Insc protein_coding protein_coding MGP_C57BL6NJ_T0086549.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123210611 123232069 + Insc protein_coding processed_transcript MGP_C57BL6NJ_T0086550.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123232930 123292781 + Insc protein_coding retained_intron MGP_C57BL6NJ_T0086551.1 MGP_C57BL6NJ_G0033380.1 mouse_genomes_project 7 123234845 123271621 + MGP_C57BL6NJ_P0086551 Insc protein_coding protein_coding MGP_C57BL6NJ_T0002399.1 MGP_C57BL6NJ_G0002288.1 mouse_genomes_project 7 78437319 78437476 + TEC TEC MGP_C57BL6NJ_T0086468.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120528153 120664722 + MGP_C57BL6NJ_P0086468 Mical2 protein_coding protein_coding MGP_C57BL6NJ_T0086469.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120528187 120656398 + MGP_C57BL6NJ_P0086469 Mical2 protein_coding protein_coding MGP_C57BL6NJ_T0086470.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120528187 120622162 + MGP_C57BL6NJ_P0086470 Mical2 protein_coding protein_coding MGP_C57BL6NJ_T0086471.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120577794 120663503 + MGP_C57BL6NJ_P0086471 Mical2 protein_coding protein_coding MGP_C57BL6NJ_T0086472.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120622775 120655521 + Mical2 protein_coding retained_intron MGP_C57BL6NJ_T0086473.1 MGP_C57BL6NJ_G0033362.1 mouse_genomes_project 7 120654758 120664722 + MGP_C57BL6NJ_P0086473 Mical2 protein_coding protein_coding MGP_C57BL6NJ_T0086140.1 MGP_C57BL6NJ_G0033229.1 mouse_genomes_project 7 112664233 112665181 + MGP_C57BL6NJ_P0086140 protein_coding protein_coding MGP_C57BL6NJ_T0103420.1 MGP_C57BL6NJ_G0041212.1 mouse_genomes_project 7 34924699 34933684 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018889.1 MGP_C57BL6NJ_G0016088.1 mouse_genomes_project 7 138019564 138021590 - Gm15503 processed_transcript retained_intron MGP_C57BL6NJ_T0018890.1 MGP_C57BL6NJ_G0016088.1 mouse_genomes_project 7 138021016 138022938 - Gm15503 processed_transcript sense_intronic MGP_C57BL6NJ_T0082818.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24645371 24662870 - MGP_C57BL6NJ_P0082818 Lipe protein_coding protein_coding MGP_C57BL6NJ_T0082819.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24645383 24666020 - MGP_C57BL6NJ_P0082819 Lipe protein_coding protein_coding MGP_C57BL6NJ_T0082820.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24650336 24652110 - MGP_C57BL6NJ_P0082820 Lipe protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0082821.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24650357 24650992 - Lipe protein_coding retained_intron MGP_C57BL6NJ_T0082822.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24655744 24657661 - MGP_C57BL6NJ_P0082822 Lipe protein_coding protein_coding MGP_C57BL6NJ_T0082823.1 MGP_C57BL6NJ_G0032313.1 mouse_genomes_project 7 24664768 24666019 - MGP_C57BL6NJ_P0082823 Lipe protein_coding protein_coding MGP_C57BL6NJ_T0086260.1 MGP_C57BL6NJ_G0033263.1 mouse_genomes_project 7 114585763 114586810 - MGP_C57BL6NJ_P0086260 Olfr697 protein_coding protein_coding MGP_C57BL6NJ_T0085018.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83910055 83929001 + Aen protein_coding processed_transcript MGP_C57BL6NJ_T0085019.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83910128 83929001 + MGP_C57BL6NJ_P0085019 Aen protein_coding protein_coding MGP_C57BL6NJ_T0085020.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83910135 83926173 + MGP_C57BL6NJ_P0085020 Aen protein_coding protein_coding MGP_C57BL6NJ_T0085021.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83910210 83926170 + MGP_C57BL6NJ_P0085021 Aen protein_coding protein_coding MGP_C57BL6NJ_T0085022.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83912232 83918244 + MGP_C57BL6NJ_P0085022 Aen protein_coding protein_coding MGP_C57BL6NJ_T0085023.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83917782 83921424 + Aen protein_coding processed_transcript MGP_C57BL6NJ_T0085024.1 MGP_C57BL6NJ_G0032864.1 mouse_genomes_project 7 83918000 83922787 + MGP_C57BL6NJ_P0085024 Aen protein_coding protein_coding MGP_C57BL6NJ_T0084925.1 MGP_C57BL6NJ_G0032847.1 mouse_genomes_project 7 73022813 73035010 - MGP_C57BL6NJ_P0084925 Arrdc4 protein_coding protein_coding MGP_C57BL6NJ_T0084926.1 MGP_C57BL6NJ_G0032847.1 mouse_genomes_project 7 73027279 73030675 - Arrdc4 protein_coding retained_intron MGP_C57BL6NJ_T0084927.1 MGP_C57BL6NJ_G0032847.1 mouse_genomes_project 7 73027371 73034957 - MGP_C57BL6NJ_P0084927 Arrdc4 protein_coding protein_coding MGP_C57BL6NJ_T0101892.1 MGP_C57BL6NJ_G0039938.1 mouse_genomes_project 7 118214142 118214326 + Snora23 snoRNA snoRNA MGP_C57BL6NJ_T0100607.1 MGP_C57BL6NJ_G0038653.1 mouse_genomes_project 7 116124990 116125048 - Gm25424 snRNA snRNA MGP_C57BL6NJ_T0084335.1 MGP_C57BL6NJ_G0032702.1 mouse_genomes_project 7 47937498 47943626 + MGP_C57BL6NJ_P0084335 Ntf5 protein_coding protein_coding MGP_C57BL6NJ_T0016165.1 MGP_C57BL6NJ_G0014210.1 mouse_genomes_project 7 23063147 23063456 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009206.1 MGP_C57BL6NJ_G0007412.1 mouse_genomes_project 7 134703824 134704945 - Gm44766 lincRNA lincRNA MGP_C57BL6NJ_T0085359.1 MGP_C57BL6NJ_G0032930.1 mouse_genomes_project 7 89065863 89100039 + Tmc3 protein_coding retained_intron MGP_C57BL6NJ_T0085360.1 MGP_C57BL6NJ_G0032930.1 mouse_genomes_project 7 89065867 89072764 + Tmc3 protein_coding retained_intron MGP_C57BL6NJ_T0085361.1 MGP_C57BL6NJ_G0032930.1 mouse_genomes_project 7 89065867 89107553 + MGP_C57BL6NJ_P0085361 Tmc3 protein_coding protein_coding MGP_C57BL6NJ_T0085362.1 MGP_C57BL6NJ_G0032930.1 mouse_genomes_project 7 89066028 89104879 + MGP_C57BL6NJ_P0085362 Tmc3 protein_coding protein_coding MGP_C57BL6NJ_T0085363.1 MGP_C57BL6NJ_G0032930.1 mouse_genomes_project 7 89078427 89079801 + Tmc3 protein_coding retained_intron MGP_C57BL6NJ_T0086070.1 MGP_C57BL6NJ_G0033181.1 mouse_genomes_project 7 111328192 111329140 - MGP_C57BL6NJ_P0086070 Olfr645 protein_coding protein_coding MGP_C57BL6NJ_T0085134.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85413710 85419120 - MGP_C57BL6NJ_P0085134 Cib1 protein_coding protein_coding MGP_C57BL6NJ_T0085135.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85413718 85419184 - MGP_C57BL6NJ_P0085135 Cib1 protein_coding protein_coding MGP_C57BL6NJ_T0085136.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85413718 85419125 - MGP_C57BL6NJ_P0085136 Cib1 protein_coding protein_coding MGP_C57BL6NJ_T0085137.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85414391 85416920 - Cib1 protein_coding retained_intron MGP_C57BL6NJ_T0085138.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85414717 85419157 - Cib1 protein_coding retained_intron MGP_C57BL6NJ_T0085139.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85414957 85419365 - MGP_C57BL6NJ_P0085139 Cib1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085140.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85418010 85419291 - Cib1 protein_coding retained_intron MGP_C57BL6NJ_T0085141.1 MGP_C57BL6NJ_G0032887.1 mouse_genomes_project 7 85418125 85419141 - Cib1 protein_coding retained_intron MGP_C57BL6NJ_T0005339.1 MGP_C57BL6NJ_G0004542.1 mouse_genomes_project 7 28945060 28949722 + antisense antisense MGP_C57BL6NJ_T0005340.1 MGP_C57BL6NJ_G0004542.1 mouse_genomes_project 7 28945060 28949720 + antisense pseudogene MGP_C57BL6NJ_T0086060.1 MGP_C57BL6NJ_G0033171.1 mouse_genomes_project 7 111182364 111183303 + MGP_C57BL6NJ_P0086060 Olfr633 protein_coding protein_coding MGP_C57BL6NJ_T0085110.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84942088 84970556 - MGP_C57BL6NJ_P0085110 Anpep protein_coding protein_coding MGP_C57BL6NJ_T0085111.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84942089 84945785 - Anpep protein_coding retained_intron MGP_C57BL6NJ_T0085112.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84942089 84964698 - MGP_C57BL6NJ_P0085112 Anpep protein_coding protein_coding MGP_C57BL6NJ_T0085113.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84942549 84970529 - MGP_C57BL6NJ_P0085113 Anpep protein_coding protein_coding MGP_C57BL6NJ_T0085114.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84964401 84984675 - MGP_C57BL6NJ_P0085114 Anpep protein_coding protein_coding MGP_C57BL6NJ_T0085115.1 MGP_C57BL6NJ_G0032881.1 mouse_genomes_project 7 84964959 84970539 - Anpep protein_coding processed_transcript MGP_C57BL6NJ_T0087302.1 MGP_C57BL6NJ_G0033528.1 mouse_genomes_project 7 136854959 136877558 - MGP_C57BL6NJ_P0087302 E430018J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0087305.1 MGP_C57BL6NJ_G0033528.1 mouse_genomes_project 7 136874845 136877568 - MGP_C57BL6NJ_P0087305 E430018J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0087306.1 MGP_C57BL6NJ_G0033528.1 mouse_genomes_project 7 136876357 136877559 - MGP_C57BL6NJ_P0087306 E430018J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0016333.1 MGP_C57BL6NJ_G0014378.1 mouse_genomes_project 7 105086595 105086909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103397.1 MGP_C57BL6NJ_G0041189.1 mouse_genomes_project 7 31635652 31636046 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0088212.1 MGP_C57BL6NJ_G0033735.1 mouse_genomes_project 7 152336056 152371429 + MGP_C57BL6NJ_P0088212 Muc5ac protein_coding protein_coding MGP_C57BL6NJ_T0088213.1 MGP_C57BL6NJ_G0033735.1 mouse_genomes_project 7 152336095 152371333 + MGP_C57BL6NJ_P0088213 Muc5ac protein_coding protein_coding MGP_C57BL6NJ_T0088214.1 MGP_C57BL6NJ_G0033735.1 mouse_genomes_project 7 152336095 152371084 + MGP_C57BL6NJ_P0088214 Muc5ac protein_coding protein_coding MGP_C57BL6NJ_T0011168.1 MGP_C57BL6NJ_G0009253.1 mouse_genomes_project 7 106271560 106271655 + Mir326 miRNA miRNA MGP_C57BL6NJ_T0081954.1 MGP_C57BL6NJ_G0032022.1 mouse_genomes_project 7 2068962 2072970 - MGP_C57BL6NJ_P0081954 Zfp784 protein_coding protein_coding MGP_C57BL6NJ_T0085481.1 MGP_C57BL6NJ_G0032987.1 mouse_genomes_project 7 96255447 96296085 - MGP_C57BL6NJ_P0085481 Ccdc83 protein_coding protein_coding MGP_C57BL6NJ_T0085482.1 MGP_C57BL6NJ_G0032987.1 mouse_genomes_project 7 96265974 96296085 - MGP_C57BL6NJ_P0085482 Ccdc83 protein_coding protein_coding MGP_C57BL6NJ_T0085483.1 MGP_C57BL6NJ_G0032987.1 mouse_genomes_project 7 96267331 96296085 - MGP_C57BL6NJ_P0085483 Ccdc83 protein_coding protein_coding MGP_C57BL6NJ_T0002336.1 MGP_C57BL6NJ_G0002226.1 mouse_genomes_project 7 1636869 1638164 + TEC TEC MGP_C57BL6NJ_T0016312.1 MGP_C57BL6NJ_G0014357.1 mouse_genomes_project 7 88410186 88410504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011100.1 MGP_C57BL6NJ_G0009185.1 mouse_genomes_project 7 24192555 24192619 - Mir7047 miRNA miRNA MGP_C57BL6NJ_T0008982.1 MGP_C57BL6NJ_G0007254.1 mouse_genomes_project 7 954625 956353 + 1700095K22Rik lincRNA lincRNA MGP_C57BL6NJ_T0081678.1 MGP_C57BL6NJ_G0031962.1 mouse_genomes_project 7 348648 359998 + MGP_C57BL6NJ_P0081678 Cacng6 protein_coding protein_coding MGP_C57BL6NJ_T0081679.1 MGP_C57BL6NJ_G0031962.1 mouse_genomes_project 7 349115 359494 + MGP_C57BL6NJ_P0081679 Cacng6 protein_coding protein_coding MGP_C57BL6NJ_T0085550.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103885195 103908834 - MGP_C57BL6NJ_P0085550 Usp35 protein_coding protein_coding MGP_C57BL6NJ_T0085551.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103885195 103902778 - MGP_C57BL6NJ_P0085551 Usp35 protein_coding protein_coding MGP_C57BL6NJ_T0085552.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103885221 103891810 - Usp35 protein_coding processed_transcript MGP_C57BL6NJ_T0085553.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103888288 103890841 - Usp35 protein_coding retained_intron MGP_C57BL6NJ_T0085554.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103888403 103891811 - Usp35 protein_coding processed_transcript MGP_C57BL6NJ_T0085555.1 MGP_C57BL6NJ_G0033003.1 mouse_genomes_project 7 103895002 103901203 - Usp35 protein_coding retained_intron MGP_C57BL6NJ_T0082980.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26836035 26854085 - MGP_C57BL6NJ_P0082980 Shkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0082981.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26836039 26854020 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082982.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26836039 26853809 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082983.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26836040 26839477 - Shkbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0082984.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26836314 26836824 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082985.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26837046 26842344 - Shkbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0082986.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26838853 26841371 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082987.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26842016 26846177 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082988.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26847301 26853825 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0082989.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26847342 26853988 - Shkbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0082991.1 MGP_C57BL6NJ_G0032357.1 mouse_genomes_project 7 26852144 26853837 - Shkbp1 protein_coding retained_intron MGP_C57BL6NJ_T0088011.1 MGP_C57BL6NJ_G0033697.1 mouse_genomes_project 7 151437714 151438837 - MGP_C57BL6NJ_P0088011 Ifitm2 protein_coding protein_coding MGP_C57BL6NJ_T0103361.1 MGP_C57BL6NJ_G0041154.1 mouse_genomes_project 7 12830976 13869413 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018801.1 MGP_C57BL6NJ_G0016052.1 mouse_genomes_project 7 27243657 27246843 - Gm44684 processed_transcript processed_transcript MGP_C57BL6NJ_T0011959.1 MGP_C57BL6NJ_G0010044.1 mouse_genomes_project 7 131526148 131526417 + Gm26414 misc_RNA misc_RNA MGP_C57BL6NJ_T0002434.1 MGP_C57BL6NJ_G0002323.1 mouse_genomes_project 7 130237736 130238368 - TEC TEC MGP_C57BL6NJ_T0082590.1 MGP_C57BL6NJ_G0032249.1 mouse_genomes_project 7 18902618 18918683 - MGP_C57BL6NJ_P0082590 Igsf23 protein_coding protein_coding MGP_C57BL6NJ_T0016265.1 MGP_C57BL6NJ_G0014310.1 mouse_genomes_project 7 49489708 49490584 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087602.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139863464 139977533 - MGP_C57BL6NJ_P0087602 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087603.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139863464 139977533 - MGP_C57BL6NJ_P0087603 Fgfr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087604.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864560 139868837 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087605.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864661 139977479 - MGP_C57BL6NJ_P0087605 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087606.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864661 139977551 - MGP_C57BL6NJ_P0087606 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087607.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864760 139874527 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087608.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087608 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087609.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087609 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087610.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087610 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087611.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087611 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087612.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087612 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087613.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087613 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087614.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087614 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087615.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087615 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087616.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087616 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087617.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087617 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087618.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087618 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087619.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087619 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087620.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139864911 139973145 - MGP_C57BL6NJ_P0087620 Fgfr2 protein_coding protein_coding MGP_C57BL6NJ_T0087621.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139870694 139880677 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087622.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139880392 139886264 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087623.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139883956 139902657 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087624.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139888396 139902169 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0087625.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139905598 139938590 - MGP_C57BL6NJ_P0087625 Fgfr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087626.1 MGP_C57BL6NJ_G0033583.1 mouse_genomes_project 7 139951618 139975263 - Fgfr2 protein_coding retained_intron MGP_C57BL6NJ_T0083881.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39555875 39570240 + MGP_C57BL6NJ_P0083881 protein_coding protein_coding MGP_C57BL6NJ_T0083882.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39555898 39556558 + protein_coding processed_transcript MGP_C57BL6NJ_T0083883.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39555919 39569264 + MGP_C57BL6NJ_P0083883 protein_coding protein_coding MGP_C57BL6NJ_T0083884.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39556311 39570240 + MGP_C57BL6NJ_P0083884 protein_coding protein_coding MGP_C57BL6NJ_T0083885.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39556506 39561615 + MGP_C57BL6NJ_P0083885 protein_coding protein_coding MGP_C57BL6NJ_T0083886.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39556556 39567644 + MGP_C57BL6NJ_P0083886 protein_coding protein_coding MGP_C57BL6NJ_T0083887.1 MGP_C57BL6NJ_G0032565.1 mouse_genomes_project 7 39558929 39567938 + MGP_C57BL6NJ_P0083887 protein_coding protein_coding MGP_C57BL6NJ_T0103369.1 MGP_C57BL6NJ_G0041162.1 mouse_genomes_project 7 12929295 12929505 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002444.1 MGP_C57BL6NJ_G0002333.1 mouse_genomes_project 7 132062813 132063806 - TEC TEC MGP_C57BL6NJ_T0085424.1 MGP_C57BL6NJ_G0032967.1 mouse_genomes_project 7 92516971 92517982 + MGP_C57BL6NJ_P0085424 Olfr293 protein_coding protein_coding MGP_C57BL6NJ_T0103472.1 MGP_C57BL6NJ_G0041264.1 mouse_genomes_project 7 50626183 50627135 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101882.1 MGP_C57BL6NJ_G0039928.1 mouse_genomes_project 7 105619149 105619271 + Gm23479 snoRNA snoRNA MGP_C57BL6NJ_T0083962.1 MGP_C57BL6NJ_G0032594.1 mouse_genomes_project 7 45635287 45636539 + MGP_C57BL6NJ_P0083962 Gm42419 protein_coding protein_coding MGP_C57BL6NJ_T0002382.1 MGP_C57BL6NJ_G0002272.1 mouse_genomes_project 7 67659090 67659449 + TEC TEC MGP_C57BL6NJ_T0086141.1 MGP_C57BL6NJ_G0033230.1 mouse_genomes_project 7 112682050 112683427 - MGP_C57BL6NJ_P0086141 Olfr683 protein_coding protein_coding MGP_C57BL6NJ_T0085025.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83931215 83938009 + MGP_C57BL6NJ_P0085025 Isg20 protein_coding protein_coding MGP_C57BL6NJ_T0085026.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83931249 83938099 + MGP_C57BL6NJ_P0085026 Isg20 protein_coding protein_coding MGP_C57BL6NJ_T0085027.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83931556 83938188 + MGP_C57BL6NJ_P0085027 Isg20 protein_coding protein_coding MGP_C57BL6NJ_T0085028.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83931772 83934810 + Isg20 protein_coding retained_intron MGP_C57BL6NJ_T0085029.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83932026 83938141 + MGP_C57BL6NJ_P0085029 Isg20 protein_coding protein_coding MGP_C57BL6NJ_T0085030.1 MGP_C57BL6NJ_G0032865.1 mouse_genomes_project 7 83932120 83937979 + MGP_C57BL6NJ_P0085030 Isg20 protein_coding protein_coding MGP_C57BL6NJ_T0002419.1 MGP_C57BL6NJ_G0002308.1 mouse_genomes_project 7 84605067 84606946 + TEC TEC MGP_C57BL6NJ_T0086135.1 MGP_C57BL6NJ_G0033224.1 mouse_genomes_project 7 112554496 112555450 + MGP_C57BL6NJ_P0086135 Olfr676 protein_coding protein_coding MGP_C57BL6NJ_T0084626.1 MGP_C57BL6NJ_G0032785.1 mouse_genomes_project 7 52902999 52958364 + MGP_C57BL6NJ_P0084626 Slc6a5 protein_coding protein_coding MGP_C57BL6NJ_T0084627.1 MGP_C57BL6NJ_G0032785.1 mouse_genomes_project 7 52904553 52954021 + MGP_C57BL6NJ_P0084627 Slc6a5 protein_coding protein_coding MGP_C57BL6NJ_T0016120.1 MGP_C57BL6NJ_G0014165.1 mouse_genomes_project 7 1588254 1588855 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086318.1 MGP_C57BL6NJ_G0033313.1 mouse_genomes_project 7 116433242 116434235 + MGP_C57BL6NJ_P0086318 protein_coding protein_coding MGP_C57BL6NJ_T0085150.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85458589 85481396 + MGP_C57BL6NJ_P0085150 Vps33b protein_coding protein_coding MGP_C57BL6NJ_T0085151.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85458619 85481388 + MGP_C57BL6NJ_P0085151 Vps33b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085152.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85458674 85475635 + Vps33b protein_coding retained_intron MGP_C57BL6NJ_T0085153.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85458680 85481386 + MGP_C57BL6NJ_P0085153 Vps33b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085154.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85463214 85473960 + Vps33b protein_coding processed_transcript MGP_C57BL6NJ_T0085155.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85479892 85481569 + MGP_C57BL6NJ_P0085155 Vps33b protein_coding protein_coding MGP_C57BL6NJ_T0085156.1 MGP_C57BL6NJ_G0032891.1 mouse_genomes_project 7 85479940 85480763 + Vps33b protein_coding retained_intron MGP_C57BL6NJ_T0009223.1 MGP_C57BL6NJ_G0007421.1 mouse_genomes_project 7 136922498 136929077 + Gm45184 lincRNA lincRNA MGP_C57BL6NJ_T0018874.1 MGP_C57BL6NJ_G0016080.1 mouse_genomes_project 7 124608894 124621575 - 1700003G18Rik processed_transcript sense_overlapping MGP_C57BL6NJ_T0018875.1 MGP_C57BL6NJ_G0016080.1 mouse_genomes_project 7 124609033 124621522 - 1700003G18Rik processed_transcript sense_overlapping MGP_C57BL6NJ_T0018876.1 MGP_C57BL6NJ_G0016080.1 mouse_genomes_project 7 124620311 124621514 - 1700003G18Rik processed_transcript retained_intron MGP_C57BL6NJ_T0103371.1 MGP_C57BL6NJ_G0041164.1 mouse_genomes_project 7 13116279 13116920 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011088.1 MGP_C57BL6NJ_G0009173.1 mouse_genomes_project 7 2181279 2181363 - Gm26217 miRNA miRNA MGP_C57BL6NJ_T0005374.1 MGP_C57BL6NJ_G0004567.1 mouse_genomes_project 7 46933310 46935871 + Gm44646 antisense antisense MGP_C57BL6NJ_T0086080.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111474601 111496808 + Trim6 protein_coding retained_intron MGP_C57BL6NJ_T0086081.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111474603 111504219 + MGP_C57BL6NJ_P0086081 Trim6 protein_coding protein_coding MGP_C57BL6NJ_T0086082.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111474645 111490007 + MGP_C57BL6NJ_P0086082 Trim6 protein_coding protein_coding MGP_C57BL6NJ_T0086083.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111475237 111490044 + MGP_C57BL6NJ_P0086083 Trim6 protein_coding protein_coding MGP_C57BL6NJ_T0086084.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111478071 111494214 + MGP_C57BL6NJ_P0086084 Trim6 protein_coding protein_coding MGP_C57BL6NJ_T0086085.1 MGP_C57BL6NJ_G0033189.1 mouse_genomes_project 7 111489617 111502065 + MGP_C57BL6NJ_P0086085 Trim6 protein_coding protein_coding MGP_C57BL6NJ_T0103499.1 MGP_C57BL6NJ_G0041291.1 mouse_genomes_project 7 91162171 91167232 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0005389.1 MGP_C57BL6NJ_G0004578.1 mouse_genomes_project 7 78207325 78225285 + Gm44686 antisense antisense MGP_C57BL6NJ_T0086120.1 MGP_C57BL6NJ_G0033211.1 mouse_genomes_project 7 112182971 112185212 - MGP_C57BL6NJ_P0086120 protein_coding protein_coding MGP_C57BL6NJ_T0083449.1 MGP_C57BL6NJ_G0032474.1 mouse_genomes_project 7 30482108 30494860 - MGP_C57BL6NJ_P0083449 Arhgap33 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011080.1 MGP_C57BL6NJ_G0009165.1 mouse_genomes_project 7 103998 104077 + Mir291b miRNA miRNA MGP_C57BL6NJ_T0016267.1 MGP_C57BL6NJ_G0014312.1 mouse_genomes_project 7 50981218 50981888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002450.1 MGP_C57BL6NJ_G0002339.1 mouse_genomes_project 7 136609139 136610386 - TEC TEC MGP_C57BL6NJ_T0085109.1 MGP_C57BL6NJ_G0032880.1 mouse_genomes_project 7 84931012 84933725 + MGP_C57BL6NJ_P0085109 Mesp2 protein_coding protein_coding MGP_C57BL6NJ_T0082645.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23354770 23370931 - MGP_C57BL6NJ_P0082645 Zfp94 protein_coding protein_coding MGP_C57BL6NJ_T0082646.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23354862 23370992 - MGP_C57BL6NJ_P0082646 Zfp94 protein_coding protein_coding MGP_C57BL6NJ_T0082647.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23356692 23363714 - Zfp94 protein_coding retained_intron MGP_C57BL6NJ_T0082648.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23362895 23370950 - Zfp94 protein_coding processed_transcript MGP_C57BL6NJ_T0082649.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23363188 23370934 - Zfp94 protein_coding retained_intron MGP_C57BL6NJ_T0082650.1 MGP_C57BL6NJ_G0032271.1 mouse_genomes_project 7 23363303 23370908 - Zfp94 protein_coding processed_transcript MGP_C57BL6NJ_T0086374.1 MGP_C57BL6NJ_G0033341.1 mouse_genomes_project 7 117869093 117885442 - MGP_C57BL6NJ_P0086374 Tmem9b protein_coding protein_coding MGP_C57BL6NJ_T0086375.1 MGP_C57BL6NJ_G0033341.1 mouse_genomes_project 7 117878617 117885510 - MGP_C57BL6NJ_P0086375 Tmem9b protein_coding protein_coding MGP_C57BL6NJ_T0099147.1 MGP_C57BL6NJ_G0037211.1 mouse_genomes_project 7 36155505 36155624 + Gm22535 rRNA rRNA MGP_C57BL6NJ_T0082490.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255484 18269157 + MGP_C57BL6NJ_P0082490 Ercc2 protein_coding protein_coding MGP_C57BL6NJ_T0082491.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255492 18259163 + Ercc2 protein_coding processed_transcript MGP_C57BL6NJ_T0082492.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255505 18269155 + MGP_C57BL6NJ_P0082492 Ercc2 protein_coding protein_coding MGP_C57BL6NJ_T0082493.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255514 18269157 + MGP_C57BL6NJ_P0082493 Ercc2 protein_coding protein_coding MGP_C57BL6NJ_T0082494.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255682 18259368 + Ercc2 protein_coding processed_transcript MGP_C57BL6NJ_T0082495.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18255743 18267924 + MGP_C57BL6NJ_P0082495 Ercc2 protein_coding protein_coding MGP_C57BL6NJ_T0082496.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18261665 18267143 + Ercc2 protein_coding processed_transcript MGP_C57BL6NJ_T0082497.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18263858 18265369 + Ercc2 protein_coding retained_intron MGP_C57BL6NJ_T0082498.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18266892 18268249 + Ercc2 protein_coding retained_intron MGP_C57BL6NJ_T0082499.1 MGP_C57BL6NJ_G0032221.1 mouse_genomes_project 7 18267123 18267528 + Ercc2 protein_coding retained_intron MGP_C57BL6NJ_T0086275.1 MGP_C57BL6NJ_G0033277.1 mouse_genomes_project 7 114857947 114861974 - MGP_C57BL6NJ_P0086275 Olfr711 protein_coding protein_coding MGP_C57BL6NJ_T0082060.1 MGP_C57BL6NJ_G0032083.1 mouse_genomes_project 7 10209583 10210504 - MGP_C57BL6NJ_P0082060 Vmn1r81 protein_coding protein_coding MGP_C57BL6NJ_T0016386.1 MGP_C57BL6NJ_G0014431.1 mouse_genomes_project 7 138631589 138632275 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103539.1 MGP_C57BL6NJ_G0041331.1 mouse_genomes_project 7 111462276 111463272 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002392.1 MGP_C57BL6NJ_G0002282.1 mouse_genomes_project 7 78058821 78060889 + TEC TEC MGP_C57BL6NJ_T0016213.1 MGP_C57BL6NJ_G0014258.1 mouse_genomes_project 7 34475516 34475651 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087804.1 MGP_C57BL6NJ_G0033627.1 mouse_genomes_project 7 145569419 145572668 + MGP_C57BL6NJ_P0087804 Foxi2 protein_coding protein_coding MGP_C57BL6NJ_T0002460.1 MGP_C57BL6NJ_G0002349.1 mouse_genomes_project 7 144144751 144149240 - TEC TEC MGP_C57BL6NJ_T0103414.1 MGP_C57BL6NJ_G0041206.1 mouse_genomes_project 7 34719819 34720645 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087157.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136257809 136268121 - MGP_C57BL6NJ_P0087157 protein_coding protein_coding MGP_C57BL6NJ_T0087158.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136258429 136268313 - MGP_C57BL6NJ_P0087158 protein_coding protein_coding MGP_C57BL6NJ_T0087159.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259274 136268635 - MGP_C57BL6NJ_P0087159 protein_coding protein_coding MGP_C57BL6NJ_T0087160.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259282 136269227 - protein_coding retained_intron MGP_C57BL6NJ_T0087161.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259429 136268710 - MGP_C57BL6NJ_P0087161 protein_coding protein_coding MGP_C57BL6NJ_T0087162.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259531 136268582 - protein_coding processed_transcript MGP_C57BL6NJ_T0087163.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259667 136264580 - MGP_C57BL6NJ_P0087163 protein_coding protein_coding MGP_C57BL6NJ_T0087164.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259744 136269211 - MGP_C57BL6NJ_P0087164 protein_coding protein_coding MGP_C57BL6NJ_T0087165.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136259779 136268633 - MGP_C57BL6NJ_P0087165 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087166.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136263050 136268719 - protein_coding retained_intron MGP_C57BL6NJ_T0087167.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136264525 136268641 - protein_coding processed_transcript MGP_C57BL6NJ_T0087168.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136264548 136268694 - MGP_C57BL6NJ_P0087168 protein_coding protein_coding MGP_C57BL6NJ_T0087169.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136264563 136268498 - MGP_C57BL6NJ_P0087169 protein_coding protein_coding MGP_C57BL6NJ_T0087170.1 MGP_C57BL6NJ_G0033498.1 mouse_genomes_project 7 136268089 136268698 - protein_coding processed_transcript MGP_C57BL6NJ_T0005477.1 MGP_C57BL6NJ_G0004639.1 mouse_genomes_project 7 153779657 153785235 - Gm28821 antisense antisense MGP_C57BL6NJ_T0084740.1 MGP_C57BL6NJ_G0032810.1 mouse_genomes_project 7 66191115 66192767 + MGP_C57BL6NJ_P0084740 Ndn protein_coding protein_coding MGP_C57BL6NJ_T0016381.1 MGP_C57BL6NJ_G0014426.1 mouse_genomes_project 7 137726937 137727837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002344.1 MGP_C57BL6NJ_G0002234.1 mouse_genomes_project 7 35230437 35231529 - TEC TEC MGP_C57BL6NJ_T0088182.1 MGP_C57BL6NJ_G0033728.1 mouse_genomes_project 7 152011431 152015549 + MGP_C57BL6NJ_P0088182 Cd151 protein_coding protein_coding MGP_C57BL6NJ_T0088183.1 MGP_C57BL6NJ_G0033728.1 mouse_genomes_project 7 152011431 152015549 + MGP_C57BL6NJ_P0088183 Cd151 protein_coding protein_coding MGP_C57BL6NJ_T0088184.1 MGP_C57BL6NJ_G0033728.1 mouse_genomes_project 7 152012858 152015549 + MGP_C57BL6NJ_P0088184 Cd151 protein_coding protein_coding MGP_C57BL6NJ_T0085498.1 MGP_C57BL6NJ_G0032991.1 mouse_genomes_project 7 96502889 96510037 - MGP_C57BL6NJ_P0085498 Tmem126a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0085499.1 MGP_C57BL6NJ_G0032991.1 mouse_genomes_project 7 96502894 96510058 - MGP_C57BL6NJ_P0085499 Tmem126a protein_coding protein_coding MGP_C57BL6NJ_T0085500.1 MGP_C57BL6NJ_G0032991.1 mouse_genomes_project 7 96508033 96510037 - Tmem126a protein_coding retained_intron MGP_C57BL6NJ_T0082166.1 MGP_C57BL6NJ_G0032116.1 mouse_genomes_project 7 11410358 11421082 + MGP_C57BL6NJ_P0082166 Cabp5 protein_coding protein_coding MGP_C57BL6NJ_T0082167.1 MGP_C57BL6NJ_G0032116.1 mouse_genomes_project 7 11410521 11418523 + MGP_C57BL6NJ_P0082167 Cabp5 protein_coding protein_coding MGP_C57BL6NJ_T0082168.1 MGP_C57BL6NJ_G0032116.1 mouse_genomes_project 7 11410534 11417774 + MGP_C57BL6NJ_P0082168 Cabp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002377.1 MGP_C57BL6NJ_G0002267.1 mouse_genomes_project 7 59308152 59309884 - TEC TEC MGP_C57BL6NJ_T0083370.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159617 30160671 + MGP_C57BL6NJ_P0083370 Polr2i protein_coding protein_coding MGP_C57BL6NJ_T0083371.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159617 30160672 + MGP_C57BL6NJ_P0083371 Polr2i protein_coding protein_coding MGP_C57BL6NJ_T0083372.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159627 30160669 + Polr2i protein_coding retained_intron MGP_C57BL6NJ_T0083373.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159631 30160681 + MGP_C57BL6NJ_P0083373 Polr2i protein_coding protein_coding MGP_C57BL6NJ_T0083374.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159635 30160611 + Polr2i protein_coding retained_intron MGP_C57BL6NJ_T0083375.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30159888 30160673 + Polr2i protein_coding processed_transcript MGP_C57BL6NJ_T0083376.1 MGP_C57BL6NJ_G0032456.1 mouse_genomes_project 7 30160217 30160668 + Polr2i protein_coding retained_intron MGP_C57BL6NJ_T0085802.1 MGP_C57BL6NJ_G0033061.1 mouse_genomes_project 7 107721535 107790341 - MGP_C57BL6NJ_P0085802 Arhgef17 protein_coding protein_coding MGP_C57BL6NJ_T0085803.1 MGP_C57BL6NJ_G0033061.1 mouse_genomes_project 7 107721565 107747474 - MGP_C57BL6NJ_P0085803 Arhgef17 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0084591.1 MGP_C57BL6NJ_G0032779.1 mouse_genomes_project 7 51742047 51759715 - MGP_C57BL6NJ_P0084591 Csrp3 protein_coding protein_coding MGP_C57BL6NJ_T0084592.1 MGP_C57BL6NJ_G0032779.1 mouse_genomes_project 7 51742047 51755335 - MGP_C57BL6NJ_P0084592 Csrp3 protein_coding protein_coding MGP_C57BL6NJ_T0005344.1 MGP_C57BL6NJ_G0004546.1 mouse_genomes_project 7 30522055 30522675 - antisense antisense MGP_C57BL6NJ_T0009107.1 MGP_C57BL6NJ_G0007352.1 mouse_genomes_project 7 77957856 77962670 + 4930429H19Rik lincRNA lincRNA MGP_C57BL6NJ_T0009108.1 MGP_C57BL6NJ_G0007352.1 mouse_genomes_project 7 77958006 77959431 + 4930429H19Rik lincRNA lincRNA MGP_C57BL6NJ_T0083857.1 MGP_C57BL6NJ_G0032561.1 mouse_genomes_project 7 37976441 38055046 + MGP_C57BL6NJ_P0083857 Tshz3 protein_coding protein_coding MGP_C57BL6NJ_T0083858.1 MGP_C57BL6NJ_G0032561.1 mouse_genomes_project 7 37976554 37980451 + Tshz3 protein_coding processed_transcript MGP_C57BL6NJ_T0016250.1 MGP_C57BL6NJ_G0014295.1 mouse_genomes_project 7 44409879 44410405 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100630.1 MGP_C57BL6NJ_G0038676.1 mouse_genomes_project 7 151625741 151625850 - Gm24962 snRNA snRNA MGP_C57BL6NJ_T0101880.1 MGP_C57BL6NJ_G0039926.1 mouse_genomes_project 7 99418231 99418357 - Gm25860 snoRNA snoRNA MGP_C57BL6NJ_T0103405.1 MGP_C57BL6NJ_G0041197.1 mouse_genomes_project 7 34426365 34428159 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0081693.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 516769 526375 - MGP_C57BL6NJ_P0081693 Tfpt protein_coding protein_coding MGP_C57BL6NJ_T0081694.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 516769 526330 - MGP_C57BL6NJ_P0081694 Tfpt protein_coding protein_coding MGP_C57BL6NJ_T0081695.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 516780 525532 - MGP_C57BL6NJ_P0081695 Tfpt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081696.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 517224 526025 - Tfpt protein_coding processed_transcript MGP_C57BL6NJ_T0081697.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 517240 526273 - MGP_C57BL6NJ_P0081697 Tfpt protein_coding protein_coding MGP_C57BL6NJ_T0081698.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 517419 526305 - MGP_C57BL6NJ_P0081698 Tfpt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081699.1 MGP_C57BL6NJ_G0031966.1 mouse_genomes_project 7 521039 526025 - MGP_C57BL6NJ_P0081699 Tfpt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0081860.1 MGP_C57BL6NJ_G0031993.1 mouse_genomes_project 7 1493318 1501275 - MGP_C57BL6NJ_P0081860 Syt5 protein_coding protein_coding MGP_C57BL6NJ_T0081861.1 MGP_C57BL6NJ_G0031993.1 mouse_genomes_project 7 1500395 1502249 - MGP_C57BL6NJ_P0081861 Syt5 protein_coding protein_coding MGP_C57BL6NJ_T0081862.1 MGP_C57BL6NJ_G0031993.1 mouse_genomes_project 7 1501000 1501681 - MGP_C57BL6NJ_P0081862 Syt5 protein_coding protein_coding MGP_C57BL6NJ_T0102575.1 MGP_C57BL6NJ_G0040404.1 mouse_genomes_project 7 111890327 111894984 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102576.1 MGP_C57BL6NJ_G0040404.1 mouse_genomes_project 7 111890976 111894474 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0086884.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388158 132480094 - MGP_C57BL6NJ_P0086884 Arhgap17 protein_coding protein_coding MGP_C57BL6NJ_T0086885.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388211 132480129 - MGP_C57BL6NJ_P0086885 Arhgap17 protein_coding protein_coding MGP_C57BL6NJ_T0086886.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388211 132480129 - MGP_C57BL6NJ_P0086886 Arhgap17 protein_coding protein_coding MGP_C57BL6NJ_T0086887.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388215 132480121 - MGP_C57BL6NJ_P0086887 Arhgap17 protein_coding protein_coding MGP_C57BL6NJ_T0086888.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388220 132480146 - MGP_C57BL6NJ_P0086888 Arhgap17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086889.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132388325 132480128 - MGP_C57BL6NJ_P0086889 Arhgap17 protein_coding protein_coding MGP_C57BL6NJ_T0086890.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132391877 132395182 - Arhgap17 protein_coding retained_intron MGP_C57BL6NJ_T0086891.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132395926 132405531 - Arhgap17 protein_coding retained_intron MGP_C57BL6NJ_T0086892.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132404219 132480158 - Arhgap17 protein_coding retained_intron MGP_C57BL6NJ_T0086893.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132430331 132480158 - MGP_C57BL6NJ_P0086893 Arhgap17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0086894.1 MGP_C57BL6NJ_G0033455.1 mouse_genomes_project 7 132479019 132480119 - Arhgap17 protein_coding retained_intron MGP_C57BL6NJ_T0103401.1 MGP_C57BL6NJ_G0041193.1 mouse_genomes_project 7 32219287 32221434 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084800.1 MGP_C57BL6NJ_G0032824.1 mouse_genomes_project 7 68770402 69201507 - MGP_C57BL6NJ_P0084800 Fam189a1 protein_coding protein_coding MGP_C57BL6NJ_T0084801.1 MGP_C57BL6NJ_G0032824.1 mouse_genomes_project 7 68770424 68787958 - Fam189a1 protein_coding processed_transcript MGP_C57BL6NJ_T0084802.1 MGP_C57BL6NJ_G0032824.1 mouse_genomes_project 7 68782034 68950312 - MGP_C57BL6NJ_P0084802 Fam189a1 protein_coding protein_coding MGP_C57BL6NJ_T0084803.1 MGP_C57BL6NJ_G0032824.1 mouse_genomes_project 7 68800995 69201353 - MGP_C57BL6NJ_P0084803 Fam189a1 protein_coding protein_coding MGP_C57BL6NJ_T0084804.1 MGP_C57BL6NJ_G0032824.1 mouse_genomes_project 7 68841531 68878326 - Fam189a1 protein_coding retained_intron MGP_C57BL6NJ_T0083047.1 MGP_C57BL6NJ_G0032370.1 mouse_genomes_project 7 27259551 27279981 + MGP_C57BL6NJ_P0083047 Zfp607b protein_coding protein_coding MGP_C57BL6NJ_T0083048.1 MGP_C57BL6NJ_G0032370.1 mouse_genomes_project 7 27262124 27395789 + Zfp607b protein_coding retained_intron MGP_C57BL6NJ_T0016153.1 MGP_C57BL6NJ_G0014198.1 mouse_genomes_project 7 15094134 15094249 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086297.1 MGP_C57BL6NJ_G0033292.1 mouse_genomes_project 7 115710026 115730143 - MGP_C57BL6NJ_P0086297 Ovch2 protein_coding protein_coding MGP_C57BL6NJ_T0101852.1 MGP_C57BL6NJ_G0039898.1 mouse_genomes_project 7 46645558 46645648 + Snord88a snoRNA snoRNA MGP_C57BL6NJ_T0087805.1 MGP_C57BL6NJ_G0033628.1 mouse_genomes_project 7 145670247 145695324 - MGP_C57BL6NJ_P0087805 Clrn3 protein_coding protein_coding MGP_C57BL6NJ_T0087960.1 MGP_C57BL6NJ_G0033684.1 mouse_genomes_project 7 151244239 151254865 - MGP_C57BL6NJ_P0087960 Syce1 protein_coding protein_coding MGP_C57BL6NJ_T0084228.1 MGP_C57BL6NJ_G0032667.1 mouse_genomes_project 7 47353169 47365905 - MGP_C57BL6NJ_P0084228 Med25 protein_coding protein_coding MGP_C57BL6NJ_T0084410.1 MGP_C57BL6NJ_G0032723.1 mouse_genomes_project 7 48259045 48263838 + MGP_C57BL6NJ_P0084410 Car11 protein_coding protein_coding MGP_C57BL6NJ_T0084249.1 MGP_C57BL6NJ_G0032677.1 mouse_genomes_project 7 47513037 47518557 + MGP_C57BL6NJ_P0084249 Rras protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011131.1 MGP_C57BL6NJ_G0009216.1 mouse_genomes_project 7 57183824 57183953 - Mir6238 miRNA miRNA MGP_C57BL6NJ_T0005345.1 MGP_C57BL6NJ_G0004547.1 mouse_genomes_project 7 30706053 30736820 + antisense antisense MGP_C57BL6NJ_T0005346.1 MGP_C57BL6NJ_G0004547.1 mouse_genomes_project 7 30711512 30716087 + antisense antisense MGP_C57BL6NJ_T0103498.1 MGP_C57BL6NJ_G0041290.1 mouse_genomes_project 7 91088163 91102769 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0083677.1 MGP_C57BL6NJ_G0032514.1 mouse_genomes_project 7 31358169 31378502 + MGP_C57BL6NJ_P0083677 Scgb2b2 protein_coding protein_coding MGP_C57BL6NJ_T0083679.1 MGP_C57BL6NJ_G0032514.1 mouse_genomes_project 7 31376285 31378502 + MGP_C57BL6NJ_P0083679 Scgb2b2 protein_coding protein_coding MGP_C57BL6NJ_T0085142.1 MGP_C57BL6NJ_G0032888.1 mouse_genomes_project 7 85419424 85428621 + MGP_C57BL6NJ_P0085142 Gdpgp1 protein_coding protein_coding MGP_C57BL6NJ_T0011961.1 MGP_C57BL6NJ_G0010046.1 mouse_genomes_project 7 140259685 140259761 - Gm27884 misc_RNA misc_RNA MGP_C57BL6NJ_T0087838.1 MGP_C57BL6NJ_G0033639.1 mouse_genomes_project 7 149279561 149365793 + MGP_C57BL6NJ_P0087838 Jakmip3 protein_coding protein_coding MGP_C57BL6NJ_T0087839.1 MGP_C57BL6NJ_G0033639.1 mouse_genomes_project 7 149279581 149365787 + MGP_C57BL6NJ_P0087839 Jakmip3 protein_coding protein_coding MGP_C57BL6NJ_T0087840.1 MGP_C57BL6NJ_G0033639.1 mouse_genomes_project 7 149328721 149386692 + MGP_C57BL6NJ_P0087840 Jakmip3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0087841.1 MGP_C57BL6NJ_G0033639.1 mouse_genomes_project 7 149383354 149404610 + MGP_C57BL6NJ_P0087841 Jakmip3 protein_coding protein_coding MGP_C57BL6NJ_T0099277.1 MGP_C57BL6NJ_G0037341.1 mouse_genomes_project 7 86857337 86857464 + Mir1839 scaRNA scaRNA MGP_C57BL6NJ_T0085888.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108847852 108867691 + MGP_C57BL6NJ_P0085888 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085889.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864177 108866173 + Anapc15 protein_coding processed_transcript MGP_C57BL6NJ_T0085890.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864487 108867688 + MGP_C57BL6NJ_P0085890 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085891.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864555 108866375 + Anapc15 protein_coding retained_intron MGP_C57BL6NJ_T0085892.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864563 108867628 + MGP_C57BL6NJ_P0085892 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085893.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864564 108869787 + MGP_C57BL6NJ_P0085893 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085894.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108864575 108867686 + Anapc15 protein_coding retained_intron MGP_C57BL6NJ_T0085895.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108865010 108866176 + Anapc15 protein_coding processed_transcript MGP_C57BL6NJ_T0085896.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108865108 108867190 + MGP_C57BL6NJ_P0085896 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085897.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108865535 108866726 + Anapc15 protein_coding retained_intron MGP_C57BL6NJ_T0085898.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108865879 108869993 + MGP_C57BL6NJ_P0085898 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085899.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108865942 108869787 + MGP_C57BL6NJ_P0085899 Anapc15 protein_coding protein_coding MGP_C57BL6NJ_T0085901.1 MGP_C57BL6NJ_G0033075.1 mouse_genomes_project 7 108867139 108867692 + Anapc15 protein_coding processed_transcript MGP_C57BL6NJ_T0086264.1 MGP_C57BL6NJ_G0033267.1 mouse_genomes_project 7 114671314 114677866 + MGP_C57BL6NJ_P0086264 Olfr701 protein_coding protein_coding MGP_C57BL6NJ_T0086265.1 MGP_C57BL6NJ_G0033267.1 mouse_genomes_project 7 114671349 114676304 + MGP_C57BL6NJ_P0086265 Olfr701 protein_coding protein_coding MGP_C57BL6NJ_T0011943.1 MGP_C57BL6NJ_G0010028.1 mouse_genomes_project 7 11383430 11383698 + Gm23499 misc_RNA misc_RNA MGP_C57BL6NJ_T0081990.1 MGP_C57BL6NJ_G0032041.1 mouse_genomes_project 7 3487625 3506151 + MGP_C57BL6NJ_P0081990 Zscan5b protein_coding protein_coding MGP_C57BL6NJ_T0081991.1 MGP_C57BL6NJ_G0032041.1 mouse_genomes_project 7 3487642 3496727 + MGP_C57BL6NJ_P0081991 Zscan5b protein_coding protein_coding MGP_C57BL6NJ_T0081992.1 MGP_C57BL6NJ_G0032041.1 mouse_genomes_project 7 3495501 3505918 + MGP_C57BL6NJ_P0081992 Zscan5b protein_coding protein_coding MGP_C57BL6NJ_T0086138.1 MGP_C57BL6NJ_G0033227.1 mouse_genomes_project 7 112613051 112633834 - MGP_C57BL6NJ_P0086138 protein_coding protein_coding MGP_C57BL6NJ_T0082512.1 MGP_C57BL6NJ_G0032227.1 mouse_genomes_project 7 18393586 18396104 - MGP_C57BL6NJ_P0082512 Bloc1s3 protein_coding protein_coding MGP_C57BL6NJ_T0103410.1 MGP_C57BL6NJ_G0041202.1 mouse_genomes_project 7 34426368 34428159 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011178.1 MGP_C57BL6NJ_G0009263.1 mouse_genomes_project 7 135719695 135719770 - Mir7058 miRNA miRNA MGP_C57BL6NJ_T0087315.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136964718 136971110 + MGP_C57BL6NJ_P0087315 Prr14 protein_coding protein_coding MGP_C57BL6NJ_T0087316.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136965369 136968205 + MGP_C57BL6NJ_P0087316 Prr14 protein_coding protein_coding MGP_C57BL6NJ_T0087317.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136965379 136968068 + MGP_C57BL6NJ_P0087317 Prr14 protein_coding protein_coding MGP_C57BL6NJ_T0087318.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136965402 136968176 + Prr14 protein_coding retained_intron MGP_C57BL6NJ_T0087319.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136965799 136967455 + Prr14 protein_coding retained_intron MGP_C57BL6NJ_T0087320.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136965840 136971109 + MGP_C57BL6NJ_P0087320 Prr14 protein_coding protein_coding MGP_C57BL6NJ_T0087321.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136966251 136969563 + Prr14 protein_coding retained_intron MGP_C57BL6NJ_T0087322.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136967973 136969621 + MGP_C57BL6NJ_P0087322 Prr14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0087323.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136969851 136971108 + Prr14 protein_coding retained_intron MGP_C57BL6NJ_T0087324.1 MGP_C57BL6NJ_G0033532.1 mouse_genomes_project 7 136969869 136971106 + MGP_C57BL6NJ_P0087324 Prr14 protein_coding protein_coding MGP_C57BL6NJ_T0088377.1 MGP_C57BL6NJ_G0033765.1 mouse_genomes_project 7 154124302 154127003 - MGP_C57BL6NJ_P0088377 Cdkn1c protein_coding protein_coding MGP_C57BL6NJ_T0088378.1 MGP_C57BL6NJ_G0033765.1 mouse_genomes_project 7 154124302 154127003 - MGP_C57BL6NJ_P0088378 Cdkn1c protein_coding protein_coding MGP_C57BL6NJ_T0016221.1 MGP_C57BL6NJ_G0014266.1 mouse_genomes_project 7 35146906 35147239 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088215.1 MGP_C57BL6NJ_G0033736.1 mouse_genomes_project 7 152391274 152428653 + MGP_C57BL6NJ_P0088215 Muc5b protein_coding protein_coding MGP_C57BL6NJ_T0016160.1 MGP_C57BL6NJ_G0014205.1 mouse_genomes_project 7 16439507 16439999 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005436.1 MGP_C57BL6NJ_G0004610.1 mouse_genomes_project 7 124554278 124554850 + Sox6os antisense antisense MGP_C57BL6NJ_T0087972.1 MGP_C57BL6NJ_G0033689.1 mouse_genomes_project 7 151327794 151330794 - MGP_C57BL6NJ_P0087972 Bet1l protein_coding protein_coding MGP_C57BL6NJ_T0086117.1 MGP_C57BL6NJ_G0033208.1 mouse_genomes_project 7 112036241 112037569 - MGP_C57BL6NJ_P0086117 protein_coding protein_coding MGP_C57BL6NJ_T0100578.1 MGP_C57BL6NJ_G0038624.1 mouse_genomes_project 7 30297546 30297739 - Gm25259 snRNA snRNA MGP_C57BL6NJ_T0011126.1 MGP_C57BL6NJ_G0009211.1 mouse_genomes_project 7 47631813 47631887 - Mir5121 miRNA miRNA MGP_C57BL6NJ_T0083696.1 MGP_C57BL6NJ_G0032529.1 mouse_genomes_project 7 34663041 34665164 - MGP_C57BL6NJ_P0083696 Scgb2b24 protein_coding protein_coding MGP_C57BL6NJ_T0082017.1 MGP_C57BL6NJ_G0032052.1 mouse_genomes_project 7 3770260 3771321 + MGP_C57BL6NJ_P0082017 Olfr1346 protein_coding protein_coding MGP_C57BL6NJ_T0086010.1 MGP_C57BL6NJ_G0033122.1 mouse_genomes_project 7 110033043 110033982 - MGP_C57BL6NJ_P0086010 Olfr577 protein_coding protein_coding MGP_C57BL6NJ_T0016240.1 MGP_C57BL6NJ_G0014285.1 mouse_genomes_project 7 43095326 43095557 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103343.1 MGP_C57BL6NJ_G0041136.1 mouse_genomes_project 7 10342354 10346972 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0016294.1 MGP_C57BL6NJ_G0014339.1 mouse_genomes_project 7 77608903 77609903 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0082636.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23343879 23352753 - MGP_C57BL6NJ_P0082636 Zfp61 protein_coding protein_coding MGP_C57BL6NJ_T0082637.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23343897 23348822 - MGP_C57BL6NJ_P0082637 Zfp61 protein_coding protein_coding MGP_C57BL6NJ_T0082638.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23344859 23348552 - Zfp61 protein_coding processed_transcript MGP_C57BL6NJ_T0082639.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23345002 23352388 - MGP_C57BL6NJ_P0082639 Zfp61 protein_coding protein_coding MGP_C57BL6NJ_T0082640.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23346201 23348389 - Zfp61 protein_coding retained_intron MGP_C57BL6NJ_T0082641.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23347911 23352376 - Zfp61 protein_coding processed_transcript MGP_C57BL6NJ_T0082642.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23348154 23352479 - Zfp61 protein_coding retained_intron MGP_C57BL6NJ_T0082643.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23350706 23354299 - Zfp61 protein_coding processed_transcript MGP_C57BL6NJ_T0082644.1 MGP_C57BL6NJ_G0032270.1 mouse_genomes_project 7 23351173 23352715 - Zfp61 protein_coding retained_intron MGP_C57BL6NJ_T0087015.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135858050 135869780 - MGP_C57BL6NJ_P0087015 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0087016.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135858057 135868757 - MGP_C57BL6NJ_P0087016 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0087017.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135858128 135869698 - MGP_C57BL6NJ_P0087017 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0087018.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135858495 135859719 - MGP_C57BL6NJ_P0087018 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0087019.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135859305 135868661 - MGP_C57BL6NJ_P0087019 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0087020.1 MGP_C57BL6NJ_G0033478.1 mouse_genomes_project 7 135865492 135868443 - MGP_C57BL6NJ_P0087020 Atxn2l protein_coding protein_coding MGP_C57BL6NJ_T0082545.1 MGP_C57BL6NJ_G0032238.1 mouse_genomes_project 7 18603393 18606506 - MGP_C57BL6NJ_P0082545 Apoc1 protein_coding protein_coding MGP_C57BL6NJ_T0082546.1 MGP_C57BL6NJ_G0032238.1 mouse_genomes_project 7 18603393 18606568 - MGP_C57BL6NJ_P0082546 Apoc1 protein_coding protein_coding MGP_C57BL6NJ_T0103416.1 MGP_C57BL6NJ_G0041208.1 mouse_genomes_project 7 34798395 34799672 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086347.1 MGP_C57BL6NJ_G0033333.1 mouse_genomes_project 7 117237775 117269342 - MGP_C57BL6NJ_P0086347 Lmo1 protein_coding protein_coding MGP_C57BL6NJ_T0087833.1 MGP_C57BL6NJ_G0033638.1 mouse_genomes_project 7 149223799 149244563 - MGP_C57BL6NJ_P0087833 Bnip3 protein_coding protein_coding MGP_C57BL6NJ_T0087834.1 MGP_C57BL6NJ_G0033638.1 mouse_genomes_project 7 149229344 149244552 - Bnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0087835.1 MGP_C57BL6NJ_G0033638.1 mouse_genomes_project 7 149229673 149233338 - Bnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0087836.1 MGP_C57BL6NJ_G0033638.1 mouse_genomes_project 7 149233601 149244576 - Bnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0087837.1 MGP_C57BL6NJ_G0033638.1 mouse_genomes_project 7 149233771 149244536 - Bnip3 protein_coding processed_transcript MGP_C57BL6NJ_T0009121.1 MGP_C57BL6NJ_G0007363.1 mouse_genomes_project 7 80606499 80609508 - lincRNA lincRNA MGP_C57BL6NJ_T0009122.1 MGP_C57BL6NJ_G0007363.1 mouse_genomes_project 7 80607223 80620016 - lincRNA lincRNA MGP_C57BL6NJ_T0099146.1 MGP_C57BL6NJ_G0037210.1 mouse_genomes_project 7 29504284 29504400 - n-R5s153 rRNA rRNA MGP_C57BL6NJ_T0011191.1 MGP_C57BL6NJ_G0009276.1 mouse_genomes_project 7 150376475 150376547 - Mir202 miRNA miRNA MGP_C57BL6NJ_T0016299.1 MGP_C57BL6NJ_G0014344.1 mouse_genomes_project 7 79620821 79620951 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0103519.1 MGP_C57BL6NJ_G0041311.1 mouse_genomes_project 7 92253782 92254688 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086077.1 MGP_C57BL6NJ_G0033187.1 mouse_genomes_project 7 111431997 111432948 - MGP_C57BL6NJ_P0086077 Olfr648 protein_coding protein_coding MGP_C57BL6NJ_T0086087.1 MGP_C57BL6NJ_G0033191.1 mouse_genomes_project 7 111546094 111623885 - MGP_C57BL6NJ_P0086087 protein_coding protein_coding MGP_C57BL6NJ_T0102314.1 MGP_C57BL6NJ_G0040278.1 mouse_genomes_project 7 42760076 42760265 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0016372.1 MGP_C57BL6NJ_G0014417.1 mouse_genomes_project 7 136133744 136133973 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0086053.1 MGP_C57BL6NJ_G0033164.1 mouse_genomes_project 7 111040783 111042312 - MGP_C57BL6NJ_P0086053 Hbb-bh1 protein_coding protein_coding MGP_C57BL6NJ_T0088012.1 MGP_C57BL6NJ_G0033698.1 mouse_genomes_project 7 151453914 151456519 + MGP_C57BL6NJ_P0088012 Ifitm1 protein_coding protein_coding MGP_C57BL6NJ_T0088013.1 MGP_C57BL6NJ_G0033698.1 mouse_genomes_project 7 151454721 151456519 + MGP_C57BL6NJ_P0088013 Ifitm1 protein_coding protein_coding MGP_C57BL6NJ_T0088014.1 MGP_C57BL6NJ_G0033698.1 mouse_genomes_project 7 151454733 151456519 + MGP_C57BL6NJ_P0088014 Ifitm1 protein_coding protein_coding MGP_C57BL6NJ_T0100604.1 MGP_C57BL6NJ_G0038650.1 mouse_genomes_project 7 103472630 103472739 - Gm22226 snRNA snRNA MGP_C57BL6NJ_T0005469.1 MGP_C57BL6NJ_G0004634.1 mouse_genomes_project 7 142936297 142940268 - Gm15718 antisense antisense MGP_C57BL6NJ_T0087952.1 MGP_C57BL6NJ_G0033676.1 mouse_genomes_project 7 151014266 151062668 + MGP_C57BL6NJ_P0087952 protein_coding protein_coding MGP_C57BL6NJ_T0083689.1 MGP_C57BL6NJ_G0032524.1 mouse_genomes_project 7 34285264 34287229 - MGP_C57BL6NJ_P0083689 protein_coding protein_coding MGP_C57BL6NJ_T0102310.1 MGP_C57BL6NJ_G0040276.1 mouse_genomes_project 7 28162946 28168110 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102311.1 MGP_C57BL6NJ_G0040276.1 mouse_genomes_project 7 28167337 28167892 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0085645.1 MGP_C57BL6NJ_G0033022.1 mouse_genomes_project 7 105089805 105126825 + MGP_C57BL6NJ_P0085645 Gucy2d protein_coding protein_coding MGP_C57BL6NJ_T0085646.1 MGP_C57BL6NJ_G0033022.1 mouse_genomes_project 7 105092810 105126824 + MGP_C57BL6NJ_P0085646 Gucy2d protein_coding protein_coding MGP_C57BL6NJ_T0085647.1 MGP_C57BL6NJ_G0033022.1 mouse_genomes_project 7 105117067 105124551 + MGP_C57BL6NJ_P0085647 Gucy2d protein_coding protein_coding MGP_C57BL6NJ_T0085648.1 MGP_C57BL6NJ_G0033022.1 mouse_genomes_project 7 105120906 105126824 + Gucy2d protein_coding processed_transcript MGP_C57BL6NJ_T0005425.1 MGP_C57BL6NJ_G0004603.1 mouse_genomes_project 7 106387513 106394564 + Gm15635 antisense antisense MGP_C57BL6NJ_T0005426.1 MGP_C57BL6NJ_G0004603.1 mouse_genomes_project 7 106391175 106394475 + Gm15635 antisense antisense MGP_C57BL6NJ_T0005427.1 MGP_C57BL6NJ_G0004603.1 mouse_genomes_project 7 106391227 106394937 + Gm15635 antisense antisense MGP_C57BL6NJ_T0009227.1 MGP_C57BL6NJ_G0007424.1 mouse_genomes_project 7 138109649 138121943 - Gm45018 lincRNA lincRNA MGP_C57BL6NJ_T0011099.1 MGP_C57BL6NJ_G0009184.1 mouse_genomes_project 7 24172896 24172962 - Mir7046 miRNA miRNA MGP_C57BL6NJ_T0082125.1 MGP_C57BL6NJ_G0032105.1 mouse_genomes_project 7 10970356 10973170 - MGP_C57BL6NJ_P0082125 Chmp2a protein_coding protein_coding MGP_C57BL6NJ_T0084314.1 MGP_C57BL6NJ_G0032699.1 mouse_genomes_project 7 47885692 47888385 - MGP_C57BL6NJ_P0084314 Lin7b protein_coding protein_coding MGP_C57BL6NJ_T0084315.1 MGP_C57BL6NJ_G0032699.1 mouse_genomes_project 7 47885694 47886404 - Lin7b protein_coding retained_intron MGP_C57BL6NJ_T0084316.1 MGP_C57BL6NJ_G0032699.1 mouse_genomes_project 7 47887011 47888117 - Lin7b protein_coding retained_intron MGP_C57BL6NJ_T0084317.1 MGP_C57BL6NJ_G0032699.1 mouse_genomes_project 7 47887065 47887987 - Lin7b protein_coding retained_intron MGP_C57BL6NJ_T0084318.1 MGP_C57BL6NJ_G0032699.1 mouse_genomes_project 7 47887364 47888148 - Lin7b protein_coding retained_intron MGP_C57BL6NJ_T0103358.1 MGP_C57BL6NJ_G0041151.1 mouse_genomes_project 7 12794083 12795094 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0084806.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69342522 69425840 - MGP_C57BL6NJ_P0084806 Tjp1 protein_coding protein_coding MGP_C57BL6NJ_T0084807.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69343065 69425616 - MGP_C57BL6NJ_P0084807 Tjp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0084808.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69343065 69425616 - MGP_C57BL6NJ_P0084808 Tjp1 protein_coding protein_coding MGP_C57BL6NJ_T0084809.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69343861 69348663 - Tjp1 protein_coding processed_transcript MGP_C57BL6NJ_T0084810.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69389412 69391987 - Tjp1 protein_coding retained_intron MGP_C57BL6NJ_T0084811.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69391806 69605021 - MGP_C57BL6NJ_P0084811 Tjp1 protein_coding protein_coding MGP_C57BL6NJ_T0084812.1 MGP_C57BL6NJ_G0032826.1 mouse_genomes_project 7 69590423 69605106 - Tjp1 protein_coding retained_intron MGP_C57BL6NJ_T0086134.1 MGP_C57BL6NJ_G0033223.1 mouse_genomes_project 7 112463528 112464467 - MGP_C57BL6NJ_P0086134 Olfr672 protein_coding protein_coding MGP_C57BL6NJ_T0103388.1 MGP_C57BL6NJ_G0041180.1 mouse_genomes_project 7 31009773 31010253 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0085357.1 MGP_C57BL6NJ_G0032928.1 mouse_genomes_project 7 88599525 88606786 + MGP_C57BL6NJ_P0085357 protein_coding protein_coding MGP_C57BL6NJ_T0082204.1 MGP_C57BL6NJ_G0032134.1 mouse_genomes_project 7 14093204 14100625 + MGP_C57BL6NJ_P0082204 protein_coding protein_coding MGP_C57BL6NJ_T0082205.1 MGP_C57BL6NJ_G0032134.1 mouse_genomes_project 7 14093450 14101860 + MGP_C57BL6NJ_P0082205 protein_coding protein_coding MGP_C57BL6NJ_T0082206.1 MGP_C57BL6NJ_G0032134.1 mouse_genomes_project 7 14093454 14100625 + MGP_C57BL6NJ_P0082206 protein_coding protein_coding MGP_C57BL6NJ_T0087940.1 MGP_C57BL6NJ_G0033666.1 mouse_genomes_project 7 150674650 150738491 + MGP_C57BL6NJ_P0087940 5830411N06Rik protein_coding protein_coding MGP_C57BL6NJ_T0087941.1 MGP_C57BL6NJ_G0033666.1 mouse_genomes_project 7 150674727 150740641 + MGP_C57BL6NJ_P0087941 5830411N06Rik protein_coding protein_coding MGP_C57BL6NJ_T0087942.1 MGP_C57BL6NJ_G0033666.1 mouse_genomes_project 7 150674730 150740641 + MGP_C57BL6NJ_P0087942 5830411N06Rik protein_coding protein_coding MGP_C57BL6NJ_T0018872.1 MGP_C57BL6NJ_G0016078.1 mouse_genomes_project 7 117551574 117557844 + 1700095J03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0082368.1 MGP_C57BL6NJ_G0032182.1 mouse_genomes_project 7 16841738 16847082 + MGP_C57BL6NJ_P0082368 Igfl3 protein_coding protein_coding MGP_C57BL6NJ_T0082935.1 MGP_C57BL6NJ_G0032348.1 mouse_genomes_project 7 26640032 26653201 - MGP_C57BL6NJ_P0082935 Gm21983 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103456.1 MGP_C57BL6NJ_G0041248.1 mouse_genomes_project 7 46562129 46576687 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0082319.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15329788 15354809 + MGP_C57BL6NJ_P0082319 Prkd2 protein_coding protein_coding MGP_C57BL6NJ_T0082320.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15329951 15354901 + MGP_C57BL6NJ_P0082320 Prkd2 protein_coding protein_coding MGP_C57BL6NJ_T0082321.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15332687 15335486 + Prkd2 protein_coding retained_intron MGP_C57BL6NJ_T0082322.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15333693 15338966 + Prkd2 protein_coding retained_intron MGP_C57BL6NJ_T0082323.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15347783 15354327 + Prkd2 protein_coding retained_intron MGP_C57BL6NJ_T0082324.1 MGP_C57BL6NJ_G0032164.1 mouse_genomes_project 7 15353688 15354573 + Prkd2 protein_coding retained_intron MGP_C57BL6NJ_T0086636.1 MGP_C57BL6NJ_G0033394.1 mouse_genomes_project 7 127275782 127324333 - MGP_C57BL6NJ_P0086636 Tmc7 protein_coding protein_coding MGP_C57BL6NJ_T0086637.1 MGP_C57BL6NJ_G0033394.1 mouse_genomes_project 7 127286419 127324283 - Tmc7 protein_coding retained_intron MGP_C57BL6NJ_T0086638.1 MGP_C57BL6NJ_G0033394.1 mouse_genomes_project 7 127304071 127306460 - Tmc7 protein_coding retained_intron MGP_C57BL6NJ_T0086639.1 MGP_C57BL6NJ_G0033394.1 mouse_genomes_project 7 127311086 127324306 - Tmc7 protein_coding processed_transcript MGP_C57BL6NJ_T0085675.1 MGP_C57BL6NJ_G0033028.1 mouse_genomes_project 7 105847848 105876501 - MGP_C57BL6NJ_P0085675 Dgat2 protein_coding protein_coding MGP_C57BL6NJ_T0103552.1 MGP_C57BL6NJ_G0041344.1 mouse_genomes_project 7 152801379 152803662 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0086143.1 MGP_C57BL6NJ_G0033232.1 mouse_genomes_project 7 112722367 112723455 - MGP_C57BL6NJ_P0086143 protein_coding protein_coding MGP_C57BL6NJ_T0087436.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137394709 137408358 - MGP_C57BL6NJ_P0087436 Zfp668 protein_coding protein_coding MGP_C57BL6NJ_T0087437.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137397379 137408310 - MGP_C57BL6NJ_P0087437 Zfp668 protein_coding protein_coding MGP_C57BL6NJ_T0087438.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137397655 137407176 - MGP_C57BL6NJ_P0087438 Zfp668 protein_coding protein_coding MGP_C57BL6NJ_T0087439.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137397655 137408307 - MGP_C57BL6NJ_P0087439 Zfp668 protein_coding protein_coding MGP_C57BL6NJ_T0087440.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137399703 137407187 - MGP_C57BL6NJ_P0087440 Zfp668 protein_coding protein_coding MGP_C57BL6NJ_T0087441.1 MGP_C57BL6NJ_G0033551.1 mouse_genomes_project 7 137405308 137407664 - Zfp668 protein_coding processed_transcript MGP_C57BL6NJ_T0016233.1 MGP_C57BL6NJ_G0014278.1 mouse_genomes_project 7 42676403 42684392 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016392.1 MGP_C57BL6NJ_G0014437.1 mouse_genomes_project 7 150180120 150180592 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0087842.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149406634 149423338 + MGP_C57BL6NJ_P0087842 Dpysl4 protein_coding protein_coding MGP_C57BL6NJ_T0087843.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149406635 149415099 + Dpysl4 protein_coding processed_transcript MGP_C57BL6NJ_T0087844.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149406660 149422429 + Dpysl4 protein_coding retained_intron MGP_C57BL6NJ_T0087845.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149406661 149422417 + Dpysl4 protein_coding retained_intron MGP_C57BL6NJ_T0087846.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149408998 149415065 + MGP_C57BL6NJ_P0087846 Dpysl4 protein_coding protein_coding MGP_C57BL6NJ_T0087847.1 MGP_C57BL6NJ_G0033640.1 mouse_genomes_project 7 149409880 149422411 + MGP_C57BL6NJ_P0087847 Dpysl4 protein_coding protein_coding MGP_C57BL6NJ_T0009241.1 MGP_C57BL6NJ_G0007435.1 mouse_genomes_project 7 143634322 143635699 - Gm28747 lincRNA lincRNA MGP_C57BL6NJ_T0084089.1 MGP_C57BL6NJ_G0032644.1 mouse_genomes_project 7 46848469 46888046 + MGP_C57BL6NJ_P0084089 Lrrc4b protein_coding protein_coding MGP_C57BL6NJ_T0084090.1 MGP_C57BL6NJ_G0032644.1 mouse_genomes_project 7 46865265 46890036 + MGP_C57BL6NJ_P0084090 Lrrc4b protein_coding protein_coding MGP_C57BL6NJ_T0084091.1 MGP_C57BL6NJ_G0032644.1 mouse_genomes_project 7 46865517 46888092 + MGP_C57BL6NJ_P0084091 Lrrc4b protein_coding protein_coding MGP_C57BL6NJ_T0103319.1 MGP_C57BL6NJ_G0041112.1 mouse_genomes_project 7 1203458 1208015 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0087800.1 MGP_C57BL6NJ_G0033623.1 mouse_genomes_project 7 144777515 145308190 + MGP_C57BL6NJ_P0087800 Dock1 protein_coding protein_coding MGP_C57BL6NJ_T0088010.1 MGP_C57BL6NJ_G0033696.1 mouse_genomes_project 7 151431841 151433118 - MGP_C57BL6NJ_P0088010 Ifitm5 protein_coding protein_coding MGP_C57BL6NJ_T0081974.1 MGP_C57BL6NJ_G0032035.1 mouse_genomes_project 7 3046251 3047214 - MGP_C57BL6NJ_P0081974 Vmn1r64 protein_coding protein_coding MGP_C57BL6NJ_T0083327.1 MGP_C57BL6NJ_G0032442.1 mouse_genomes_project 7 29793028 29807198 - MGP_C57BL6NJ_P0083327 protein_coding protein_coding MGP_C57BL6NJ_T0083328.1 MGP_C57BL6NJ_G0032442.1 mouse_genomes_project 7 29795155 29819269 - MGP_C57BL6NJ_P0083328 protein_coding protein_coding MGP_C57BL6NJ_T0083329.1 MGP_C57BL6NJ_G0032442.1 mouse_genomes_project 7 29797686 29819079 - MGP_C57BL6NJ_P0083329 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0083330.1 MGP_C57BL6NJ_G0032442.1 mouse_genomes_project 7 29801389 29819271 - protein_coding processed_transcript MGP_C57BL6NJ_T0027891.1 MGP_C57BL6NJ_G0018239.1 mouse_genomes_project 10 136182524 136198521 + MGP_C57BL6NJ_P0027891 Naca protein_coding protein_coding MGP_C57BL6NJ_T0027892.1 MGP_C57BL6NJ_G0018239.1 mouse_genomes_project 10 136182524 136198521 + MGP_C57BL6NJ_P0027892 Naca protein_coding protein_coding MGP_C57BL6NJ_T0027694.1 MGP_C57BL6NJ_G0018173.1 mouse_genomes_project 10 128499098 128577012 + MGP_C57BL6NJ_P0027694 Wif1 protein_coding protein_coding MGP_C57BL6NJ_T0027695.1 MGP_C57BL6NJ_G0018173.1 mouse_genomes_project 10 128499162 128577008 + MGP_C57BL6NJ_P0027695 Wif1 protein_coding protein_coding MGP_C57BL6NJ_T0027696.1 MGP_C57BL6NJ_G0018173.1 mouse_genomes_project 10 128560340 128576999 + Wif1 protein_coding retained_intron MGP_C57BL6NJ_T0099696.1 MGP_C57BL6NJ_G0037742.1 mouse_genomes_project 10 66167714 66167822 - Gm23854 snRNA snRNA MGP_C57BL6NJ_T0027418.1 MGP_C57BL6NJ_G0018077.1 mouse_genomes_project 10 102823033 102859055 + MGP_C57BL6NJ_P0027418 Epyc protein_coding protein_coding MGP_C57BL6NJ_T0027419.1 MGP_C57BL6NJ_G0018077.1 mouse_genomes_project 10 102826054 102859609 + MGP_C57BL6NJ_P0027419 Epyc protein_coding protein_coding MGP_C57BL6NJ_T0099718.1 MGP_C57BL6NJ_G0037764.1 mouse_genomes_project 10 110668454 110668559 - Gm25522 snRNA snRNA MGP_C57BL6NJ_T0027248.1 MGP_C57BL6NJ_G0018039.1 mouse_genomes_project 10 93990155 94074138 + MGP_C57BL6NJ_P0027248 Uhrf1bp1l protein_coding protein_coding MGP_C57BL6NJ_T0027761.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068810 135073197 + MGP_C57BL6NJ_P0027761 Cdk4 protein_coding protein_coding MGP_C57BL6NJ_T0027762.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068879 135072279 + MGP_C57BL6NJ_P0027762 Cdk4 protein_coding protein_coding MGP_C57BL6NJ_T0027763.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068880 135071454 + MGP_C57BL6NJ_P0027763 Cdk4 protein_coding protein_coding MGP_C57BL6NJ_T0027764.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068885 135072279 + MGP_C57BL6NJ_P0027764 Cdk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027765.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068890 135072574 + Cdk4 protein_coding retained_intron MGP_C57BL6NJ_T0027766.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135068892 135070557 + Cdk4 protein_coding retained_intron MGP_C57BL6NJ_T0027767.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135069144 135071508 + MGP_C57BL6NJ_P0027767 Cdk4 protein_coding protein_coding MGP_C57BL6NJ_T0027768.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135069574 135070592 + Cdk4 protein_coding retained_intron MGP_C57BL6NJ_T0027769.1 MGP_C57BL6NJ_G0018198.1 mouse_genomes_project 10 135071352 135072512 + Cdk4 protein_coding retained_intron MGP_C57BL6NJ_T0025172.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18510976 18540928 + MGP_C57BL6NJ_P0025172 Bclaf1 protein_coding protein_coding MGP_C57BL6NJ_T0025173.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18510979 18538693 + MGP_C57BL6NJ_P0025173 Bclaf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025174.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18510991 18540926 + MGP_C57BL6NJ_P0025174 Bclaf1 protein_coding protein_coding MGP_C57BL6NJ_T0025175.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18511035 18521022 + Bclaf1 protein_coding retained_intron MGP_C57BL6NJ_T0025176.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18511036 18538689 + MGP_C57BL6NJ_P0025176 Bclaf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025177.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18511044 18538690 + MGP_C57BL6NJ_P0025177 Bclaf1 protein_coding protein_coding MGP_C57BL6NJ_T0025178.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18522146 18543040 + MGP_C57BL6NJ_P0025178 Bclaf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025179.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18524471 18530685 + MGP_C57BL6NJ_P0025179 Bclaf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025180.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18527475 18532317 + Bclaf1 protein_coding retained_intron MGP_C57BL6NJ_T0025181.1 MGP_C57BL6NJ_G0017452.1 mouse_genomes_project 10 18531680 18538633 + Bclaf1 protein_coding retained_intron MGP_C57BL6NJ_T0100947.1 MGP_C57BL6NJ_G0038993.1 mouse_genomes_project 10 9570503 9570629 + Gm25011 snoRNA snoRNA MGP_C57BL6NJ_T0000962.1 MGP_C57BL6NJ_G0000872.1 mouse_genomes_project 10 120691293 120691897 + TEC TEC MGP_C57BL6NJ_T0026474.1 MGP_C57BL6NJ_G0017840.1 mouse_genomes_project 10 82877791 82892374 - MGP_C57BL6NJ_P0026474 Theg protein_coding protein_coding MGP_C57BL6NJ_T0026475.1 MGP_C57BL6NJ_G0017840.1 mouse_genomes_project 10 82877921 82883927 - Theg protein_coding retained_intron MGP_C57BL6NJ_T0026476.1 MGP_C57BL6NJ_G0017840.1 mouse_genomes_project 10 82877921 82892569 - MGP_C57BL6NJ_P0026476 Theg protein_coding protein_coding MGP_C57BL6NJ_T0026697.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83742936 83743912 - Adamtsl5 protein_coding processed_transcript MGP_C57BL6NJ_T0026698.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83743619 83754172 - Adamtsl5 protein_coding retained_intron MGP_C57BL6NJ_T0026699.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83743647 83750126 - Adamtsl5 protein_coding retained_intron MGP_C57BL6NJ_T0026700.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83744667 83754172 - Adamtsl5 protein_coding retained_intron MGP_C57BL6NJ_T0026701.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83744667 83754172 - MGP_C57BL6NJ_P0026701 Adamtsl5 protein_coding protein_coding MGP_C57BL6NJ_T0026702.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83746565 83754172 - MGP_C57BL6NJ_P0026702 Adamtsl5 protein_coding protein_coding MGP_C57BL6NJ_T0026703.1 MGP_C57BL6NJ_G0017892.1 mouse_genomes_project 10 83746832 83749245 - Adamtsl5 protein_coding processed_transcript MGP_C57BL6NJ_T0027479.1 MGP_C57BL6NJ_G0018099.1 mouse_genomes_project 10 109095364 109160986 + MGP_C57BL6NJ_P0027479 Slc6a15 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0012728.1 MGP_C57BL6NJ_G0010773.1 mouse_genomes_project 10 90977169 90977578 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101000.1 MGP_C57BL6NJ_G0039046.1 mouse_genomes_project 10 136076927 136077058 - Gm23996 snoRNA snoRNA MGP_C57BL6NJ_T0003248.1 MGP_C57BL6NJ_G0003010.1 mouse_genomes_project 10 126693080 126694026 - Gm16321 antisense antisense MGP_C57BL6NJ_T0099676.1 MGP_C57BL6NJ_G0037722.1 mouse_genomes_project 10 28361712 28361819 + Gm25596 snRNA snRNA MGP_C57BL6NJ_T0025856.1 MGP_C57BL6NJ_G0017690.1 mouse_genomes_project 10 63888756 63903455 + MGP_C57BL6NJ_P0025856 Tacr2 protein_coding protein_coding MGP_C57BL6NJ_T0003198.1 MGP_C57BL6NJ_G0002975.1 mouse_genomes_project 10 78992776 78994544 + Gm16222 antisense antisense MGP_C57BL6NJ_T0027533.1 MGP_C57BL6NJ_G0018119.1 mouse_genomes_project 10 117823938 117847622 + MGP_C57BL6NJ_P0027533 Nap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0027534.1 MGP_C57BL6NJ_G0018119.1 mouse_genomes_project 10 117831353 117848878 + MGP_C57BL6NJ_P0027534 Nap1l1 protein_coding protein_coding MGP_C57BL6NJ_T0006254.1 MGP_C57BL6NJ_G0005231.1 mouse_genomes_project 10 54948907 54955364 + Gm16998 lincRNA lincRNA MGP_C57BL6NJ_T0026518.1 MGP_C57BL6NJ_G0017856.1 mouse_genomes_project 10 83143487 83152673 + MGP_C57BL6NJ_P0026518 Misp protein_coding protein_coding MGP_C57BL6NJ_T0026519.1 MGP_C57BL6NJ_G0017856.1 mouse_genomes_project 10 83145093 83152673 + MGP_C57BL6NJ_P0026519 Misp protein_coding protein_coding MGP_C57BL6NJ_T0025665.1 MGP_C57BL6NJ_G0017632.1 mouse_genomes_project 10 57405648 57419543 + MGP_C57BL6NJ_P0025665 Gja1 protein_coding protein_coding MGP_C57BL6NJ_T0024862.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1427257 1457379 - MGP_C57BL6NJ_P0024862 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024863.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1427257 1457404 - MGP_C57BL6NJ_P0024863 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024864.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1427264 1432203 - protein_coding retained_intron MGP_C57BL6NJ_T0024865.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1427642 1432016 - MGP_C57BL6NJ_P0024865 protein_coding protein_coding MGP_C57BL6NJ_T0024866.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1428080 1437843 - protein_coding retained_intron MGP_C57BL6NJ_T0024867.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1450191 1457559 - protein_coding retained_intron MGP_C57BL6NJ_T0024868.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1452473 1457529 - MGP_C57BL6NJ_P0024868 protein_coding protein_coding MGP_C57BL6NJ_T0024869.1 MGP_C57BL6NJ_G0017377.1 mouse_genomes_project 10 1453769 1457535 - protein_coding retained_intron MGP_C57BL6NJ_T0009830.1 MGP_C57BL6NJ_G0007915.1 mouse_genomes_project 10 134992978 134993062 + Mir26a-2 miRNA miRNA MGP_C57BL6NJ_T0026024.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911311 72277966 + protein_coding retained_intron MGP_C57BL6NJ_T0026025.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911311 72110298 + protein_coding processed_transcript MGP_C57BL6NJ_T0026026.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911311 72461924 + MGP_C57BL6NJ_P0026026 protein_coding protein_coding MGP_C57BL6NJ_T0026027.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911354 72255686 + protein_coding retained_intron MGP_C57BL6NJ_T0026028.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911382 72457292 + MGP_C57BL6NJ_P0026028 protein_coding protein_coding MGP_C57BL6NJ_T0026029.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911386 72457548 + MGP_C57BL6NJ_P0026029 protein_coding protein_coding MGP_C57BL6NJ_T0026030.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911386 72457548 + MGP_C57BL6NJ_P0026030 protein_coding protein_coding MGP_C57BL6NJ_T0026031.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911604 72226404 + MGP_C57BL6NJ_P0026031 protein_coding protein_coding MGP_C57BL6NJ_T0026032.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911747 72456532 + MGP_C57BL6NJ_P0026032 protein_coding protein_coding MGP_C57BL6NJ_T0026033.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911761 72448270 + MGP_C57BL6NJ_P0026033 protein_coding protein_coding MGP_C57BL6NJ_T0026034.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911761 72448270 + MGP_C57BL6NJ_P0026034 protein_coding protein_coding MGP_C57BL6NJ_T0026035.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911761 72448270 + MGP_C57BL6NJ_P0026035 protein_coding protein_coding MGP_C57BL6NJ_T0026036.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911761 72448270 + MGP_C57BL6NJ_P0026036 protein_coding protein_coding MGP_C57BL6NJ_T0026037.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 71911761 72448270 + MGP_C57BL6NJ_P0026037 protein_coding protein_coding MGP_C57BL6NJ_T0026038.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72095747 72099928 + protein_coding retained_intron MGP_C57BL6NJ_T0026039.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72095821 72448268 + MGP_C57BL6NJ_P0026039 protein_coding protein_coding MGP_C57BL6NJ_T0026040.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72095925 72427577 + protein_coding retained_intron MGP_C57BL6NJ_T0026041.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72095929 72223958 + protein_coding retained_intron MGP_C57BL6NJ_T0026042.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72185953 72210796 + protein_coding retained_intron MGP_C57BL6NJ_T0026043.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72185964 72263943 + MGP_C57BL6NJ_P0026043 protein_coding protein_coding MGP_C57BL6NJ_T0026044.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72187895 72255107 + MGP_C57BL6NJ_P0026044 protein_coding protein_coding MGP_C57BL6NJ_T0026045.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72311724 72456587 + MGP_C57BL6NJ_P0026045 protein_coding protein_coding MGP_C57BL6NJ_T0026046.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72312662 72401349 + MGP_C57BL6NJ_P0026046 protein_coding protein_coding MGP_C57BL6NJ_T0026047.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72335864 72379408 + protein_coding retained_intron MGP_C57BL6NJ_T0026048.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72350972 72351816 + protein_coding retained_intron MGP_C57BL6NJ_T0026049.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72350972 72456623 + MGP_C57BL6NJ_P0026049 protein_coding protein_coding MGP_C57BL6NJ_T0026050.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351009 72457620 + MGP_C57BL6NJ_P0026050 protein_coding protein_coding MGP_C57BL6NJ_T0026051.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351250 72457548 + MGP_C57BL6NJ_P0026051 protein_coding protein_coding MGP_C57BL6NJ_T0026052.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351250 72457548 + MGP_C57BL6NJ_P0026052 protein_coding protein_coding MGP_C57BL6NJ_T0026053.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351250 72457548 + MGP_C57BL6NJ_P0026053 protein_coding protein_coding MGP_C57BL6NJ_T0026054.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351282 72448442 + MGP_C57BL6NJ_P0026054 protein_coding protein_coding MGP_C57BL6NJ_T0026055.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351296 72426847 + protein_coding retained_intron MGP_C57BL6NJ_T0026056.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351431 72457309 + MGP_C57BL6NJ_P0026056 protein_coding protein_coding MGP_C57BL6NJ_T0026057.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351557 72457292 + MGP_C57BL6NJ_P0026057 protein_coding protein_coding MGP_C57BL6NJ_T0026058.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72351610 72456661 + MGP_C57BL6NJ_P0026058 protein_coding protein_coding MGP_C57BL6NJ_T0026059.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72401260 72414641 + protein_coding retained_intron MGP_C57BL6NJ_T0026060.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72410809 72432177 + MGP_C57BL6NJ_P0026060 protein_coding protein_coding MGP_C57BL6NJ_T0026061.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72411700 72418447 + MGP_C57BL6NJ_P0026061 protein_coding protein_coding MGP_C57BL6NJ_T0026062.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72412661 72457548 + MGP_C57BL6NJ_P0026062 protein_coding protein_coding MGP_C57BL6NJ_T0026063.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72414462 72432382 + protein_coding retained_intron MGP_C57BL6NJ_T0026064.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72420185 72457294 + MGP_C57BL6NJ_P0026064 protein_coding protein_coding MGP_C57BL6NJ_T0026065.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72422271 72457113 + MGP_C57BL6NJ_P0026065 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026066.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72424427 72430847 + MGP_C57BL6NJ_P0026066 protein_coding protein_coding MGP_C57BL6NJ_T0026067.1 MGP_C57BL6NJ_G0017730.1 mouse_genomes_project 10 72426639 72437403 + protein_coding retained_intron MGP_C57BL6NJ_T0026796.1 MGP_C57BL6NJ_G0017921.1 mouse_genomes_project 10 84367760 84369280 - MGP_C57BL6NJ_P0026796 Timm13 protein_coding protein_coding MGP_C57BL6NJ_T0025853.1 MGP_C57BL6NJ_G0017688.1 mouse_genomes_project 10 63741485 63743159 + MGP_C57BL6NJ_P0025853 Neurog3 protein_coding protein_coding MGP_C57BL6NJ_T0100975.1 MGP_C57BL6NJ_G0039021.1 mouse_genomes_project 10 68583742 68583872 + Gm22594 snoRNA snoRNA MGP_C57BL6NJ_T0009809.1 MGP_C57BL6NJ_G0007894.1 mouse_genomes_project 10 97652067 97652186 + Mir1931 miRNA miRNA MGP_C57BL6NJ_T0006258.1 MGP_C57BL6NJ_G0005235.1 mouse_genomes_project 10 62472128 62481054 - Gm20610 lincRNA lincRNA MGP_C57BL6NJ_T0025958.1 MGP_C57BL6NJ_G0017713.1 mouse_genomes_project 10 65226580 66926475 + MGP_C57BL6NJ_P0025958 Ctnna3 protein_coding protein_coding MGP_C57BL6NJ_T0025959.1 MGP_C57BL6NJ_G0017713.1 mouse_genomes_project 10 65254523 66927177 + MGP_C57BL6NJ_P0025959 Ctnna3 protein_coding protein_coding MGP_C57BL6NJ_T0025960.1 MGP_C57BL6NJ_G0017713.1 mouse_genomes_project 10 65307378 66926343 + MGP_C57BL6NJ_P0025960 Ctnna3 protein_coding protein_coding MGP_C57BL6NJ_T0025961.1 MGP_C57BL6NJ_G0017713.1 mouse_genomes_project 10 65385375 65399683 + Ctnna3 protein_coding processed_transcript MGP_C57BL6NJ_T0025962.1 MGP_C57BL6NJ_G0017713.1 mouse_genomes_project 10 65649418 65931072 + Ctnna3 protein_coding processed_transcript MGP_C57BL6NJ_T0012710.1 MGP_C57BL6NJ_G0010755.1 mouse_genomes_project 10 52863927 52864478 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012694.1 MGP_C57BL6NJ_G0010739.1 mouse_genomes_project 10 23243409 23244194 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027604.1 MGP_C57BL6NJ_G0018144.1 mouse_genomes_project 10 123874656 123921522 - MGP_C57BL6NJ_P0027604 Rab3ip protein_coding protein_coding MGP_C57BL6NJ_T0027605.1 MGP_C57BL6NJ_G0018144.1 mouse_genomes_project 10 123875908 123921487 - MGP_C57BL6NJ_P0027605 Rab3ip protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099315.1 MGP_C57BL6NJ_G0037378.1 mouse_genomes_project 10 76169628 76205023 + Gm15397 sense_intronic sense_intronic MGP_C57BL6NJ_T0027414.1 MGP_C57BL6NJ_G0018074.1 mouse_genomes_project 10 102641748 102682155 + MGP_C57BL6NJ_P0027414 Dcn protein_coding protein_coding MGP_C57BL6NJ_T0027415.1 MGP_C57BL6NJ_G0018074.1 mouse_genomes_project 10 102644598 102682155 + MGP_C57BL6NJ_P0027415 Dcn protein_coding protein_coding MGP_C57BL6NJ_T0009821.1 MGP_C57BL6NJ_G0007906.1 mouse_genomes_project 10 123455968 123456063 - Gm25190 miRNA miRNA MGP_C57BL6NJ_T0024966.1 MGP_C57BL6NJ_G0017395.1 mouse_genomes_project 10 5011613 5049362 + MGP_C57BL6NJ_P0024966 Lats1 protein_coding protein_coding MGP_C57BL6NJ_T0024967.1 MGP_C57BL6NJ_G0017395.1 mouse_genomes_project 10 5022732 5046490 + MGP_C57BL6NJ_P0024967 Lats1 protein_coding protein_coding MGP_C57BL6NJ_T0025818.1 MGP_C57BL6NJ_G0017677.1 mouse_genomes_project 10 63000547 63002240 - MGP_C57BL6NJ_P0025818 D830039M14Rik protein_coding protein_coding MGP_C57BL6NJ_T0012702.1 MGP_C57BL6NJ_G0010747.1 mouse_genomes_project 10 39447320 39447930 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024844.1 MGP_C57BL6NJ_G0017371.1 mouse_genomes_project 10 260580 369937 + MGP_C57BL6NJ_P0024844 Ppp1r14c protein_coding protein_coding MGP_C57BL6NJ_T0025644.1 MGP_C57BL6NJ_G0017624.1 mouse_genomes_project 10 54101293 54208785 - MGP_C57BL6NJ_P0025644 Cep85l protein_coding protein_coding MGP_C57BL6NJ_T0026512.1 MGP_C57BL6NJ_G0017854.1 mouse_genomes_project 10 83100385 83107889 - MGP_C57BL6NJ_P0026512 Prss57 protein_coding protein_coding MGP_C57BL6NJ_T0026513.1 MGP_C57BL6NJ_G0017854.1 mouse_genomes_project 10 83100387 83109865 - MGP_C57BL6NJ_P0026513 Prss57 protein_coding protein_coding MGP_C57BL6NJ_T0026514.1 MGP_C57BL6NJ_G0017854.1 mouse_genomes_project 10 83101829 83103469 - MGP_C57BL6NJ_P0026514 Prss57 protein_coding protein_coding MGP_C57BL6NJ_T0026515.1 MGP_C57BL6NJ_G0017854.1 mouse_genomes_project 10 83102007 83103487 - MGP_C57BL6NJ_P0026515 Prss57 protein_coding protein_coding MGP_C57BL6NJ_T0025902.1 MGP_C57BL6NJ_G0017698.1 mouse_genomes_project 10 64234718 64258257 - MGP_C57BL6NJ_P0025902 Ddx21 protein_coding protein_coding MGP_C57BL6NJ_T0027944.1 MGP_C57BL6NJ_G0018256.1 mouse_genomes_project 10 136587107 136596650 + Ankrd52 protein_coding retained_intron MGP_C57BL6NJ_T0027945.1 MGP_C57BL6NJ_G0018256.1 mouse_genomes_project 10 136587111 136605160 + MGP_C57BL6NJ_P0027945 Ankrd52 protein_coding protein_coding MGP_C57BL6NJ_T0027946.1 MGP_C57BL6NJ_G0018256.1 mouse_genomes_project 10 136600443 136619816 + MGP_C57BL6NJ_P0027946 Ankrd52 protein_coding protein_coding MGP_C57BL6NJ_T0027646.1 MGP_C57BL6NJ_G0018161.1 mouse_genomes_project 10 125584925 125589771 + MGP_C57BL6NJ_P0027646 Ifng protein_coding protein_coding MGP_C57BL6NJ_T0100969.1 MGP_C57BL6NJ_G0039015.1 mouse_genomes_project 10 52625341 52625469 + Gm23906 snoRNA snoRNA MGP_C57BL6NJ_T0027120.1 MGP_C57BL6NJ_G0018006.1 mouse_genomes_project 10 89861775 89914265 - MGP_C57BL6NJ_P0027120 Bpifc protein_coding protein_coding MGP_C57BL6NJ_T0027121.1 MGP_C57BL6NJ_G0018006.1 mouse_genomes_project 10 89898295 89914226 - MGP_C57BL6NJ_P0027121 Bpifc protein_coding protein_coding MGP_C57BL6NJ_T0099700.1 MGP_C57BL6NJ_G0037746.1 mouse_genomes_project 10 83020500 83020607 - Gm25794 snRNA snRNA MGP_C57BL6NJ_T0026901.1 MGP_C57BL6NJ_G0017948.1 mouse_genomes_project 10 84888641 84897373 + MGP_C57BL6NJ_P0026901 Mfsd12 protein_coding protein_coding MGP_C57BL6NJ_T0026902.1 MGP_C57BL6NJ_G0017948.1 mouse_genomes_project 10 84888702 84892382 + MGP_C57BL6NJ_P0026902 Mfsd12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102719.1 MGP_C57BL6NJ_G0040514.1 mouse_genomes_project 10 112410908 112411374 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0028050.1 MGP_C57BL6NJ_G0018309.1 mouse_genomes_project 10 137916798 137917737 + MGP_C57BL6NJ_P0028050 Olfr791 protein_coding protein_coding MGP_C57BL6NJ_T0009798.1 MGP_C57BL6NJ_G0007883.1 mouse_genomes_project 10 84597981 84598041 + Mir5615-2 miRNA miRNA MGP_C57BL6NJ_T0026603.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83483690 83498280 + MGP_C57BL6NJ_P0026603 Stk11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026604.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83483690 83498493 + MGP_C57BL6NJ_P0026604 Stk11 protein_coding protein_coding MGP_C57BL6NJ_T0026605.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83484234 83498281 + MGP_C57BL6NJ_P0026605 Stk11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026606.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83484241 83485702 + Stk11 protein_coding processed_transcript MGP_C57BL6NJ_T0026607.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83484505 83498289 + MGP_C57BL6NJ_P0026607 Stk11 protein_coding protein_coding MGP_C57BL6NJ_T0026608.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83492629 83497786 + Stk11 protein_coding retained_intron MGP_C57BL6NJ_T0026609.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83493185 83494320 + Stk11 protein_coding retained_intron MGP_C57BL6NJ_T0026610.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83494196 83496010 + Stk11 protein_coding retained_intron MGP_C57BL6NJ_T0026611.1 MGP_C57BL6NJ_G0017876.1 mouse_genomes_project 10 83494492 83498281 + MGP_C57BL6NJ_P0026611 Stk11 protein_coding protein_coding MGP_C57BL6NJ_T0000966.1 MGP_C57BL6NJ_G0000876.1 mouse_genomes_project 10 127650268 127652803 + TEC TEC MGP_C57BL6NJ_T0024860.1 MGP_C57BL6NJ_G0017376.1 mouse_genomes_project 10 1382881 1411030 - MGP_C57BL6NJ_P0024860 Zbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0024861.1 MGP_C57BL6NJ_G0017376.1 mouse_genomes_project 10 1383282 1410384 - MGP_C57BL6NJ_P0024861 Zbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0025092.1 MGP_C57BL6NJ_G0017425.1 mouse_genomes_project 10 12179313 12327206 - MGP_C57BL6NJ_P0025092 Adgrg6 protein_coding protein_coding MGP_C57BL6NJ_T0006272.1 MGP_C57BL6NJ_G0005245.1 mouse_genomes_project 10 80524943 80564815 + 2810425M01Rik lincRNA lincRNA MGP_C57BL6NJ_T0009824.1 MGP_C57BL6NJ_G0007909.1 mouse_genomes_project 10 130224480 130224577 + Mir6412 miRNA miRNA MGP_C57BL6NJ_T0025463.1 MGP_C57BL6NJ_G0017563.1 mouse_genomes_project 10 40436934 40463101 + MGP_C57BL6NJ_P0025463 Ddo protein_coding protein_coding MGP_C57BL6NJ_T0025313.1 MGP_C57BL6NJ_G0017504.1 mouse_genomes_project 10 26986531 27536630 + MGP_C57BL6NJ_P0025313 Ptprk protein_coding protein_coding MGP_C57BL6NJ_T0025314.1 MGP_C57BL6NJ_G0017504.1 mouse_genomes_project 10 26986792 27536559 + MGP_C57BL6NJ_P0025314 Ptprk protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025315.1 MGP_C57BL6NJ_G0017504.1 mouse_genomes_project 10 27400839 27536559 + MGP_C57BL6NJ_P0025315 Ptprk protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026287.1 MGP_C57BL6NJ_G0017783.1 mouse_genomes_project 10 79555944 79585431 - MGP_C57BL6NJ_P0026287 Col6a2 protein_coding protein_coding MGP_C57BL6NJ_T0026288.1 MGP_C57BL6NJ_G0017783.1 mouse_genomes_project 10 79558017 79585126 - MGP_C57BL6NJ_P0026288 Col6a2 protein_coding protein_coding MGP_C57BL6NJ_T0026289.1 MGP_C57BL6NJ_G0017783.1 mouse_genomes_project 10 79561193 79585126 - Col6a2 protein_coding retained_intron MGP_C57BL6NJ_T0026152.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77757768 77837680 - MGP_C57BL6NJ_P0026152 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026153.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77757768 77837668 - MGP_C57BL6NJ_P0026153 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026154.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77757768 77837701 - MGP_C57BL6NJ_P0026154 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026155.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77759963 77837668 - MGP_C57BL6NJ_P0026155 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026156.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77761961 77837677 - MGP_C57BL6NJ_P0026156 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026160.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77827384 77837643 - MGP_C57BL6NJ_P0026160 Rsph14 protein_coding protein_coding MGP_C57BL6NJ_T0026161.1 MGP_C57BL6NJ_G0017743.1 mouse_genomes_project 10 77829593 77837701 - Rsph14 protein_coding retained_intron MGP_C57BL6NJ_T0027018.1 MGP_C57BL6NJ_G0017975.1 mouse_genomes_project 10 86121025 86127980 - MGP_C57BL6NJ_P0027018 Gm1553 protein_coding protein_coding MGP_C57BL6NJ_T0025915.1 MGP_C57BL6NJ_G0017703.1 mouse_genomes_project 10 64640167 64668818 + MGP_C57BL6NJ_P0025915 Slc25a16 protein_coding protein_coding MGP_C57BL6NJ_T0025916.1 MGP_C57BL6NJ_G0017703.1 mouse_genomes_project 10 64640201 64650100 + Slc25a16 protein_coding retained_intron MGP_C57BL6NJ_T0025917.1 MGP_C57BL6NJ_G0017703.1 mouse_genomes_project 10 64640214 64666749 + MGP_C57BL6NJ_P0025917 Slc25a16 protein_coding protein_coding MGP_C57BL6NJ_T0025918.1 MGP_C57BL6NJ_G0017703.1 mouse_genomes_project 10 64664761 64666754 + Slc25a16 protein_coding retained_intron MGP_C57BL6NJ_T0025465.1 MGP_C57BL6NJ_G0017565.1 mouse_genomes_project 10 40660325 40712587 - MGP_C57BL6NJ_P0025465 Cdc40 protein_coding protein_coding MGP_C57BL6NJ_T0099698.1 MGP_C57BL6NJ_G0037744.1 mouse_genomes_project 10 69414698 69414799 - Gm26359 snRNA snRNA MGP_C57BL6NJ_T0026348.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80657521 80698095 + MGP_C57BL6NJ_P0026348 Sumo3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026349.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80657533 80671455 + MGP_C57BL6NJ_P0026349 Sumo3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026350.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80657549 80671052 + MGP_C57BL6NJ_P0026350 Sumo3 protein_coding protein_coding MGP_C57BL6NJ_T0026351.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80657549 80671388 + MGP_C57BL6NJ_P0026351 Sumo3 protein_coding protein_coding MGP_C57BL6NJ_T0026352.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80657645 80671003 + MGP_C57BL6NJ_P0026352 Sumo3 protein_coding protein_coding MGP_C57BL6NJ_T0026353.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80659926 80672167 + MGP_C57BL6NJ_P0026353 Sumo3 protein_coding protein_coding MGP_C57BL6NJ_T0026354.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80662997 80671643 + MGP_C57BL6NJ_P0026354 Sumo3 protein_coding protein_coding MGP_C57BL6NJ_T0026355.1 MGP_C57BL6NJ_G0017795.1 mouse_genomes_project 10 80669877 80670805 + Sumo3 protein_coding processed_transcript MGP_C57BL6NJ_T0100949.1 MGP_C57BL6NJ_G0038995.1 mouse_genomes_project 10 11999938 12000049 + Gm24343 snoRNA snoRNA MGP_C57BL6NJ_T0012720.1 MGP_C57BL6NJ_G0010765.1 mouse_genomes_project 10 76384264 76384813 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026874.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816272 84845976 + MGP_C57BL6NJ_P0026874 Pip5k1c protein_coding protein_coding MGP_C57BL6NJ_T0026875.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816289 84844258 + MGP_C57BL6NJ_P0026875 Pip5k1c protein_coding protein_coding MGP_C57BL6NJ_T0026876.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816297 84835134 + MGP_C57BL6NJ_P0026876 Pip5k1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026877.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816313 84845976 + MGP_C57BL6NJ_P0026877 Pip5k1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026878.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816314 84845977 + MGP_C57BL6NJ_P0026878 Pip5k1c protein_coding protein_coding MGP_C57BL6NJ_T0026879.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84816368 84845984 + MGP_C57BL6NJ_P0026879 Pip5k1c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026880.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84836691 84839444 + MGP_C57BL6NJ_P0026880 Pip5k1c protein_coding protein_coding MGP_C57BL6NJ_T0026881.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84839366 84844149 + MGP_C57BL6NJ_P0026881 Pip5k1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026882.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84839501 84844024 + MGP_C57BL6NJ_P0026882 Pip5k1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026883.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84839991 84841786 + Pip5k1c protein_coding retained_intron MGP_C57BL6NJ_T0026884.1 MGP_C57BL6NJ_G0017943.1 mouse_genomes_project 10 84842845 84844017 + Pip5k1c protein_coding retained_intron MGP_C57BL6NJ_T0024907.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028142 4271619 + MGP_C57BL6NJ_P0024907 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024908.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028142 4330687 + MGP_C57BL6NJ_P0024908 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024909.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4129573 + MGP_C57BL6NJ_P0024909 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024910.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4109011 + MGP_C57BL6NJ_P0024910 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024911.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4130328 + MGP_C57BL6NJ_P0024911 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024912.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4129573 + MGP_C57BL6NJ_P0024912 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024913.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4129573 + MGP_C57BL6NJ_P0024913 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024914.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4129573 + MGP_C57BL6NJ_P0024914 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024915.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4028229 4331032 + MGP_C57BL6NJ_P0024915 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024916.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064713 4130063 + MGP_C57BL6NJ_P0024916 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024917.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064806 4330663 + MGP_C57BL6NJ_P0024917 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024918.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4121207 + MGP_C57BL6NJ_P0024918 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024919.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4330687 + MGP_C57BL6NJ_P0024919 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024920.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4112882 + MGP_C57BL6NJ_P0024920 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024921.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4271679 + MGP_C57BL6NJ_P0024921 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024922.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4330663 + MGP_C57BL6NJ_P0024922 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024923.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4331684 + MGP_C57BL6NJ_P0024923 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024924.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4121364 + MGP_C57BL6NJ_P0024924 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024925.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4330948 + MGP_C57BL6NJ_P0024925 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024926.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4271669 + MGP_C57BL6NJ_P0024926 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024927.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4330684 + MGP_C57BL6NJ_P0024927 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024928.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4118507 + MGP_C57BL6NJ_P0024928 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024929.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4121189 + MGP_C57BL6NJ_P0024929 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024930.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4119746 + MGP_C57BL6NJ_P0024930 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024931.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4110686 + MGP_C57BL6NJ_P0024931 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024932.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064921 4330968 + MGP_C57BL6NJ_P0024932 Oprm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024933.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064949 4119781 + MGP_C57BL6NJ_P0024933 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024934.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4064949 4112688 + MGP_C57BL6NJ_P0024934 Oprm1 protein_coding protein_coding MGP_C57BL6NJ_T0024935.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4065087 4330968 + Oprm1 protein_coding processed_transcript MGP_C57BL6NJ_T0024936.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4065137 4108958 + Oprm1 protein_coding processed_transcript MGP_C57BL6NJ_T0024937.1 MGP_C57BL6NJ_G0017389.1 mouse_genomes_project 10 4065211 4129702 + Oprm1 protein_coding processed_transcript MGP_C57BL6NJ_T0028046.1 MGP_C57BL6NJ_G0018305.1 mouse_genomes_project 10 137857610 137858546 + MGP_C57BL6NJ_P0028046 Olfr788 protein_coding protein_coding MGP_C57BL6NJ_T0099672.1 MGP_C57BL6NJ_G0037718.1 mouse_genomes_project 10 11621810 11621917 - Gm22995 snRNA snRNA MGP_C57BL6NJ_T0026815.1 MGP_C57BL6NJ_G0017927.1 mouse_genomes_project 10 84531135 84547215 - MGP_C57BL6NJ_P0026815 Sgta protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026816.1 MGP_C57BL6NJ_G0017927.1 mouse_genomes_project 10 84531141 84547245 - MGP_C57BL6NJ_P0026816 Sgta protein_coding protein_coding MGP_C57BL6NJ_T0027799.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135322418 135339620 - MGP_C57BL6NJ_P0027799 Mars protein_coding protein_coding MGP_C57BL6NJ_T0027800.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135322419 135339620 - MGP_C57BL6NJ_P0027800 Mars protein_coding protein_coding MGP_C57BL6NJ_T0027801.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135322423 135339512 - Mars protein_coding retained_intron MGP_C57BL6NJ_T0027802.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135322423 135325433 - MGP_C57BL6NJ_P0027802 Mars protein_coding protein_coding MGP_C57BL6NJ_T0027803.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135322546 135325344 - Mars protein_coding retained_intron MGP_C57BL6NJ_T0027804.1 MGP_C57BL6NJ_G0018211.1 mouse_genomes_project 10 135335660 135336688 - Mars protein_coding retained_intron MGP_C57BL6NJ_T0025171.1 MGP_C57BL6NJ_G0017451.1 mouse_genomes_project 10 18509013 18510802 - MGP_C57BL6NJ_P0025171 4933406P04Rik protein_coding protein_coding MGP_C57BL6NJ_T0027089.1 MGP_C57BL6NJ_G0017994.1 mouse_genomes_project 10 88541216 88701631 + MGP_C57BL6NJ_P0027089 Rfx4 protein_coding protein_coding MGP_C57BL6NJ_T0027090.1 MGP_C57BL6NJ_G0017994.1 mouse_genomes_project 10 88546999 88602744 + Rfx4 protein_coding processed_transcript MGP_C57BL6NJ_T0027091.1 MGP_C57BL6NJ_G0017994.1 mouse_genomes_project 10 88546999 88602744 + Rfx4 protein_coding processed_transcript MGP_C57BL6NJ_T0027092.1 MGP_C57BL6NJ_G0017994.1 mouse_genomes_project 10 88631277 88665466 + Rfx4 protein_coding processed_transcript MGP_C57BL6NJ_T0027093.1 MGP_C57BL6NJ_G0017994.1 mouse_genomes_project 10 88631277 88702942 + MGP_C57BL6NJ_P0027093 Rfx4 protein_coding protein_coding MGP_C57BL6NJ_T0025741.1 MGP_C57BL6NJ_G0017657.1 mouse_genomes_project 10 61186550 61207589 + MGP_C57BL6NJ_P0025741 Dnajb12 protein_coding protein_coding MGP_C57BL6NJ_T0025742.1 MGP_C57BL6NJ_G0017657.1 mouse_genomes_project 10 61186558 61205009 + MGP_C57BL6NJ_P0025742 Dnajb12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025743.1 MGP_C57BL6NJ_G0017657.1 mouse_genomes_project 10 61186569 61207583 + MGP_C57BL6NJ_P0025743 Dnajb12 protein_coding protein_coding MGP_C57BL6NJ_T0025744.1 MGP_C57BL6NJ_G0017657.1 mouse_genomes_project 10 61186612 61203770 + MGP_C57BL6NJ_P0025744 Dnajb12 protein_coding protein_coding MGP_C57BL6NJ_T0025745.1 MGP_C57BL6NJ_G0017657.1 mouse_genomes_project 10 61186620 61205516 + MGP_C57BL6NJ_P0025745 Dnajb12 protein_coding protein_coding MGP_C57BL6NJ_T0025231.1 MGP_C57BL6NJ_G0017468.1 mouse_genomes_project 10 21322619 21325466 - MGP_C57BL6NJ_P0025231 Tcf21 protein_coding protein_coding MGP_C57BL6NJ_T0012693.1 MGP_C57BL6NJ_G0010738.1 mouse_genomes_project 10 22671226 22671841 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003169.1 MGP_C57BL6NJ_G0002953.1 mouse_genomes_project 10 39231943 39235081 - Gm16364 antisense antisense MGP_C57BL6NJ_T0012718.1 MGP_C57BL6NJ_G0010763.1 mouse_genomes_project 10 74493003 74493808 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025816.1 MGP_C57BL6NJ_G0017675.1 mouse_genomes_project 10 62919199 62926380 + MGP_C57BL6NJ_P0025816 Nodal protein_coding protein_coding MGP_C57BL6NJ_T0027857.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135742101 135743758 + Nemp1 protein_coding processed_transcript MGP_C57BL6NJ_T0027858.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135742323 135744052 + Nemp1 protein_coding processed_transcript MGP_C57BL6NJ_T0027859.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135742366 135743763 + Nemp1 protein_coding processed_transcript MGP_C57BL6NJ_T0027860.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135742556 135771516 + MGP_C57BL6NJ_P0027860 Nemp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027861.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135752259 135770291 + MGP_C57BL6NJ_P0027861 Nemp1 protein_coding protein_coding MGP_C57BL6NJ_T0027862.1 MGP_C57BL6NJ_G0018224.1 mouse_genomes_project 10 135752293 135771516 + MGP_C57BL6NJ_P0027862 Nemp1 protein_coding protein_coding MGP_C57BL6NJ_T0003163.1 MGP_C57BL6NJ_G0002948.1 mouse_genomes_project 10 19418335 19427469 + Gm26577 antisense antisense MGP_C57BL6NJ_T0099702.1 MGP_C57BL6NJ_G0037748.1 mouse_genomes_project 10 83342757 83342864 + Gm26243 snRNA snRNA MGP_C57BL6NJ_T0025964.1 MGP_C57BL6NJ_G0017715.1 mouse_genomes_project 10 65766233 65943859 - MGP_C57BL6NJ_P0025964 Lrrtm3 protein_coding protein_coding MGP_C57BL6NJ_T0025965.1 MGP_C57BL6NJ_G0017715.1 mouse_genomes_project 10 65767651 65943862 - Lrrtm3 protein_coding processed_transcript MGP_C57BL6NJ_T0025966.1 MGP_C57BL6NJ_G0017715.1 mouse_genomes_project 10 65941080 65943832 - Lrrtm3 protein_coding retained_intron MGP_C57BL6NJ_T0025967.1 MGP_C57BL6NJ_G0017715.1 mouse_genomes_project 10 65942638 65943835 - MGP_C57BL6NJ_P0025967 Lrrtm3 protein_coding protein_coding MGP_C57BL6NJ_T0012734.1 MGP_C57BL6NJ_G0010779.1 mouse_genomes_project 10 111357329 111358253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017561.1 MGP_C57BL6NJ_G0015523.1 mouse_genomes_project 10 5081617 5102414 - Gm20470 processed_transcript processed_transcript MGP_C57BL6NJ_T0027417.1 MGP_C57BL6NJ_G0018076.1 mouse_genomes_project 10 102780199 102786683 + MGP_C57BL6NJ_P0027417 Kera protein_coding protein_coding MGP_C57BL6NJ_T0025061.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 10891351 11017436 - MGP_C57BL6NJ_P0025061 Phactr2 protein_coding protein_coding MGP_C57BL6NJ_T0025062.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 10896961 11082238 - MGP_C57BL6NJ_P0025062 Phactr2 protein_coding protein_coding MGP_C57BL6NJ_T0025063.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 10896961 11170426 - MGP_C57BL6NJ_P0025063 Phactr2 protein_coding protein_coding MGP_C57BL6NJ_T0025064.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 10896963 11017565 - MGP_C57BL6NJ_P0025064 Phactr2 protein_coding protein_coding MGP_C57BL6NJ_T0025065.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 10897824 11082455 - MGP_C57BL6NJ_P0025065 Phactr2 protein_coding protein_coding MGP_C57BL6NJ_T0025066.1 MGP_C57BL6NJ_G0017419.1 mouse_genomes_project 10 11074877 11082216 - Phactr2 protein_coding processed_transcript MGP_C57BL6NJ_T0006287.1 MGP_C57BL6NJ_G0005257.1 mouse_genomes_project 10 95498532 95499612 + Gm26765 lincRNA lincRNA MGP_C57BL6NJ_T0025249.1 MGP_C57BL6NJ_G0017480.1 mouse_genomes_project 10 22594061 22595138 - MGP_C57BL6NJ_P0025249 Taar7a protein_coding protein_coding MGP_C57BL6NJ_T0099667.1 MGP_C57BL6NJ_G0037713.1 mouse_genomes_project 10 2476101 2476208 + Gm23573 snRNA snRNA MGP_C57BL6NJ_T0027196.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92551507 92577894 - MGP_C57BL6NJ_P0027196 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027197.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92551766 92582396 - MGP_C57BL6NJ_P0027197 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027201.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92570842 92607026 - MGP_C57BL6NJ_P0027201 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027202.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92573872 92606952 - MGP_C57BL6NJ_P0027202 Chpt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027203.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92574270 92606923 - MGP_C57BL6NJ_P0027203 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027204.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92574270 92606652 - MGP_C57BL6NJ_P0027204 Chpt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027205.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92574292 92606842 - MGP_C57BL6NJ_P0027205 Chpt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027206.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92588163 92606871 - MGP_C57BL6NJ_P0027206 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027207.1 MGP_C57BL6NJ_G0018026.1 mouse_genomes_project 10 92589612 92606878 - MGP_C57BL6NJ_P0027207 Chpt1 protein_coding protein_coding MGP_C57BL6NJ_T0027340.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98458060 98492047 - MGP_C57BL6NJ_P0027340 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027341.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98459397 98463635 - Metap2 protein_coding retained_intron MGP_C57BL6NJ_T0027342.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98460493 98493435 - MGP_C57BL6NJ_P0027342 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027343.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98460494 98492008 - MGP_C57BL6NJ_P0027343 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027344.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98460494 98492017 - MGP_C57BL6NJ_P0027344 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027345.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98461146 98471214 - MGP_C57BL6NJ_P0027345 Metap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027346.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98461813 98463566 - Metap2 protein_coding retained_intron MGP_C57BL6NJ_T0027347.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98461813 98465068 - MGP_C57BL6NJ_P0027347 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027348.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98468397 98471072 - Metap2 protein_coding retained_intron MGP_C57BL6NJ_T0027349.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98468494 98491847 - MGP_C57BL6NJ_P0027349 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027350.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98469751 98492047 - MGP_C57BL6NJ_P0027350 Metap2 protein_coding protein_coding MGP_C57BL6NJ_T0027351.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98480321 98491961 - Metap2 protein_coding retained_intron MGP_C57BL6NJ_T0027352.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98480400 98491994 - Metap2 protein_coding retained_intron MGP_C57BL6NJ_T0027353.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98491921 98492527 - Metap2 protein_coding processed_transcript MGP_C57BL6NJ_T0027354.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98492160 98493362 - Metap2 protein_coding processed_transcript MGP_C57BL6NJ_T0027355.1 MGP_C57BL6NJ_G0018057.1 mouse_genomes_project 10 98492273 98499317 - Metap2 protein_coding processed_transcript MGP_C57BL6NJ_T0025572.1 MGP_C57BL6NJ_G0017592.1 mouse_genomes_project 10 43604003 43605018 + MGP_C57BL6NJ_P0025572 protein_coding protein_coding MGP_C57BL6NJ_T0027128.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 89958851 90403006 - MGP_C57BL6NJ_P0027128 Syn3 protein_coding protein_coding MGP_C57BL6NJ_T0027129.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 89961149 89973295 - Syn3 protein_coding processed_transcript MGP_C57BL6NJ_T0027130.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 89976935 90396006 - Syn3 protein_coding retained_intron MGP_C57BL6NJ_T0027131.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 90194202 90403032 - MGP_C57BL6NJ_P0027131 Syn3 protein_coding protein_coding MGP_C57BL6NJ_T0027136.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 90250479 90396006 - Syn3 protein_coding retained_intron MGP_C57BL6NJ_T0027137.1 MGP_C57BL6NJ_G0018008.1 mouse_genomes_project 10 90253850 90403046 - Syn3 protein_coding retained_intron MGP_C57BL6NJ_T0025078.1 MGP_C57BL6NJ_G0017422.1 mouse_genomes_project 10 11260319 11270748 + MGP_C57BL6NJ_P0025078 Adat2 protein_coding protein_coding MGP_C57BL6NJ_T0006270.1 MGP_C57BL6NJ_G0005243.1 mouse_genomes_project 10 73834143 73837370 + Gm20609 lincRNA lincRNA MGP_C57BL6NJ_T0003253.1 MGP_C57BL6NJ_G0003014.1 mouse_genomes_project 10 128326559 128330229 + Gm4473 antisense antisense MGP_C57BL6NJ_T0009772.1 MGP_C57BL6NJ_G0007857.1 mouse_genomes_project 10 46097646 46097761 - Gm27410 miRNA miRNA MGP_C57BL6NJ_T0025751.1 MGP_C57BL6NJ_G0017660.1 mouse_genomes_project 10 61321813 61433663 + MGP_C57BL6NJ_P0025751 Ascc1 protein_coding protein_coding MGP_C57BL6NJ_T0025752.1 MGP_C57BL6NJ_G0017660.1 mouse_genomes_project 10 61322335 61433663 + MGP_C57BL6NJ_P0025752 Ascc1 protein_coding protein_coding MGP_C57BL6NJ_T0003221.1 MGP_C57BL6NJ_G0002993.1 mouse_genomes_project 10 89922810 89924699 - A230060F14Rik antisense antisense MGP_C57BL6NJ_T0003222.1 MGP_C57BL6NJ_G0002993.1 mouse_genomes_project 10 89924149 89924695 - A230060F14Rik antisense antisense MGP_C57BL6NJ_T0027639.1 MGP_C57BL6NJ_G0018158.1 mouse_genomes_project 10 124920970 124953299 - MGP_C57BL6NJ_P0027639 Rap1b protein_coding protein_coding MGP_C57BL6NJ_T0025908.1 MGP_C57BL6NJ_G0017701.1 mouse_genomes_project 10 64431428 64484218 - MGP_C57BL6NJ_P0025908 Ccar1 protein_coding protein_coding MGP_C57BL6NJ_T0024899.1 MGP_C57BL6NJ_G0017386.1 mouse_genomes_project 10 2988806 3002017 - MGP_C57BL6NJ_P0024899 Mtrf1l protein_coding protein_coding MGP_C57BL6NJ_T0024900.1 MGP_C57BL6NJ_G0017386.1 mouse_genomes_project 10 2990131 2992675 - Mtrf1l protein_coding processed_transcript MGP_C57BL6NJ_T0024901.1 MGP_C57BL6NJ_G0017386.1 mouse_genomes_project 10 2997261 3001653 - Mtrf1l protein_coding processed_transcript MGP_C57BL6NJ_T0026494.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053179 83063719 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026495.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053183 83056482 - MGP_C57BL6NJ_P0026495 Polrmt protein_coding protein_coding MGP_C57BL6NJ_T0026496.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053184 83063719 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026497.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053185 83053891 - Polrmt protein_coding processed_transcript MGP_C57BL6NJ_T0026498.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053186 83063727 - MGP_C57BL6NJ_P0026498 Polrmt protein_coding protein_coding MGP_C57BL6NJ_T0026499.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053186 83063725 - MGP_C57BL6NJ_P0026499 Polrmt protein_coding protein_coding MGP_C57BL6NJ_T0026500.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053228 83053876 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026501.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053229 83054821 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026502.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053230 83063717 - MGP_C57BL6NJ_P0026502 Polrmt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026503.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053263 83054794 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026504.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83053633 83055739 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026505.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83055195 83056483 - Polrmt protein_coding retained_intron MGP_C57BL6NJ_T0026506.1 MGP_C57BL6NJ_G0017850.1 mouse_genomes_project 10 83060823 83063719 - Polrmt protein_coding processed_transcript MGP_C57BL6NJ_T0099724.1 MGP_C57BL6NJ_G0037770.1 mouse_genomes_project 10 121750437 121750544 + Gm22070 snRNA snRNA MGP_C57BL6NJ_T0098954.1 MGP_C57BL6NJ_G0037018.1 mouse_genomes_project 10 111673862 111673973 - n-R5s80 rRNA rRNA MGP_C57BL6NJ_T0099714.1 MGP_C57BL6NJ_G0037760.1 mouse_genomes_project 10 98804478 98804560 - Gm26122 snRNA snRNA MGP_C57BL6NJ_T0024845.1 MGP_C57BL6NJ_G0017372.1 mouse_genomes_project 10 457950 482628 + MGP_C57BL6NJ_P0024845 Iyd protein_coding protein_coding MGP_C57BL6NJ_T0024846.1 MGP_C57BL6NJ_G0017372.1 mouse_genomes_project 10 457998 476307 + Iyd protein_coding retained_intron MGP_C57BL6NJ_T0026003.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71496415 71590283 + MGP_C57BL6NJ_P0026003 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026004.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71550079 71634658 + MGP_C57BL6NJ_P0026004 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026006.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71554617 71636548 + MGP_C57BL6NJ_P0026006 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026007.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71554640 71616475 + Rhobtb1 protein_coding retained_intron MGP_C57BL6NJ_T0026008.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71554659 71634756 + MGP_C57BL6NJ_P0026008 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026009.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71555067 71606729 + MGP_C57BL6NJ_P0026009 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026010.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71555154 71590293 + MGP_C57BL6NJ_P0026010 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026011.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71555177 71636537 + MGP_C57BL6NJ_P0026011 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026012.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71557285 71634468 + MGP_C57BL6NJ_P0026012 Rhobtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026013.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71561363 71590298 + MGP_C57BL6NJ_P0026013 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026014.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71606175 71610621 + Rhobtb1 protein_coding processed_transcript MGP_C57BL6NJ_T0026015.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71622284 71634756 + MGP_C57BL6NJ_P0026015 Rhobtb1 protein_coding protein_coding MGP_C57BL6NJ_T0026016.1 MGP_C57BL6NJ_G0017727.1 mouse_genomes_project 10 71622397 71631665 + Rhobtb1 protein_coding processed_transcript MGP_C57BL6NJ_T0025791.1 MGP_C57BL6NJ_G0017669.1 mouse_genomes_project 10 62522693 62529115 + MGP_C57BL6NJ_P0025791 Pcbd1 protein_coding protein_coding MGP_C57BL6NJ_T0027869.1 MGP_C57BL6NJ_G0018229.1 mouse_genomes_project 10 135838528 135848963 + MGP_C57BL6NJ_P0027869 protein_coding protein_coding MGP_C57BL6NJ_T0025327.1 MGP_C57BL6NJ_G0017507.1 mouse_genomes_project 10 28138800 28139713 - MGP_C57BL6NJ_P0025327 Gm9996 protein_coding protein_coding MGP_C57BL6NJ_T0100945.1 MGP_C57BL6NJ_G0038991.1 mouse_genomes_project 10 8909597 8909735 - Gm25979 snoRNA snoRNA MGP_C57BL6NJ_T0102728.1 MGP_C57BL6NJ_G0040523.1 mouse_genomes_project 10 138568037 138568789 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0025578.1 MGP_C57BL6NJ_G0017595.1 mouse_genomes_project 10 43684972 43730808 + MGP_C57BL6NJ_P0025578 F930017D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0027982.1 MGP_C57BL6NJ_G0018268.1 mouse_genomes_project 10 136862061 136864085 - MGP_C57BL6NJ_P0027982 Rps26 protein_coding protein_coding MGP_C57BL6NJ_T0025219.1 MGP_C57BL6NJ_G0017463.1 mouse_genomes_project 10 20521665 20792649 + MGP_C57BL6NJ_P0025219 protein_coding protein_coding MGP_C57BL6NJ_T0025224.1 MGP_C57BL6NJ_G0017463.1 mouse_genomes_project 10 20777736 20792646 + MGP_C57BL6NJ_P0025224 protein_coding protein_coding MGP_C57BL6NJ_T0025225.1 MGP_C57BL6NJ_G0017463.1 mouse_genomes_project 10 20778134 20792649 + MGP_C57BL6NJ_P0025225 protein_coding protein_coding MGP_C57BL6NJ_T0006328.1 MGP_C57BL6NJ_G0005279.1 mouse_genomes_project 10 136883471 136888242 + Gm26876 lincRNA lincRNA MGP_C57BL6NJ_T0003177.1 MGP_C57BL6NJ_G0002957.1 mouse_genomes_project 10 41640060 41647228 + BC048559 antisense antisense MGP_C57BL6NJ_T0027742.1 MGP_C57BL6NJ_G0018192.1 mouse_genomes_project 10 134999174 135021584 + MGP_C57BL6NJ_P0027742 Avil protein_coding protein_coding MGP_C57BL6NJ_T0027743.1 MGP_C57BL6NJ_G0018192.1 mouse_genomes_project 10 134999204 135004988 + MGP_C57BL6NJ_P0027743 Avil protein_coding protein_coding MGP_C57BL6NJ_T0027744.1 MGP_C57BL6NJ_G0018192.1 mouse_genomes_project 10 135001466 135005060 + MGP_C57BL6NJ_P0027744 Avil protein_coding protein_coding MGP_C57BL6NJ_T0027745.1 MGP_C57BL6NJ_G0018192.1 mouse_genomes_project 10 135001600 135021368 + MGP_C57BL6NJ_P0027745 Avil protein_coding protein_coding MGP_C57BL6NJ_T0000961.1 MGP_C57BL6NJ_G0000871.1 mouse_genomes_project 10 118196755 118197053 + TEC TEC MGP_C57BL6NJ_T0009797.1 MGP_C57BL6NJ_G0007882.1 mouse_genomes_project 10 84597979 84598039 - Mir5615-1 miRNA miRNA MGP_C57BL6NJ_T0099705.1 MGP_C57BL6NJ_G0037751.1 mouse_genomes_project 10 88382337 88382432 + Gm25657 snRNA snRNA MGP_C57BL6NJ_T0025563.1 MGP_C57BL6NJ_G0017589.1 mouse_genomes_project 10 43202058 43203916 + MGP_C57BL6NJ_P0025563 9030612E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0026648.1 MGP_C57BL6NJ_G0017882.1 mouse_genomes_project 10 83548098 83558619 + MGP_C57BL6NJ_P0026648 Efna2 protein_coding protein_coding MGP_C57BL6NJ_T0009802.1 MGP_C57BL6NJ_G0007887.1 mouse_genomes_project 10 85049357 85049454 + Gm25595 miRNA miRNA MGP_C57BL6NJ_T0027836.1 MGP_C57BL6NJ_G0018219.1 mouse_genomes_project 10 135578367 135584750 - MGP_C57BL6NJ_P0027836 Shmt2 protein_coding protein_coding MGP_C57BL6NJ_T0102713.1 MGP_C57BL6NJ_G0040508.1 mouse_genomes_project 10 59418014 59422517 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0027413.1 MGP_C57BL6NJ_G0018073.1 mouse_genomes_project 10 101177646 101177958 + MGP_C57BL6NJ_P0027413 Gm5426 protein_coding protein_coding MGP_C57BL6NJ_T0006312.1 MGP_C57BL6NJ_G0005267.1 mouse_genomes_project 10 112374793 112378611 - C230021G24Rik lincRNA lincRNA MGP_C57BL6NJ_T0009775.1 MGP_C57BL6NJ_G0007860.1 mouse_genomes_project 10 61462431 61462489 + Mir6906 miRNA miRNA MGP_C57BL6NJ_T0027421.1 MGP_C57BL6NJ_G0018079.1 mouse_genomes_project 10 102874250 102876118 + MGP_C57BL6NJ_P0027421 Ccer1 protein_coding protein_coding MGP_C57BL6NJ_T0003188.1 MGP_C57BL6NJ_G0002966.1 mouse_genomes_project 10 64232341 64233717 + 4933428P19Rik antisense antisense MGP_C57BL6NJ_T0026754.1 MGP_C57BL6NJ_G0017906.1 mouse_genomes_project 10 84080520 84098094 - MGP_C57BL6NJ_P0026754 Btbd2 protein_coding protein_coding MGP_C57BL6NJ_T0026755.1 MGP_C57BL6NJ_G0017906.1 mouse_genomes_project 10 84080520 84097517 - MGP_C57BL6NJ_P0026755 Btbd2 protein_coding protein_coding MGP_C57BL6NJ_T0026756.1 MGP_C57BL6NJ_G0017906.1 mouse_genomes_project 10 84080526 84082564 - Btbd2 protein_coding retained_intron MGP_C57BL6NJ_T0026757.1 MGP_C57BL6NJ_G0017906.1 mouse_genomes_project 10 84082034 84086494 - Btbd2 protein_coding retained_intron MGP_C57BL6NJ_T0026758.1 MGP_C57BL6NJ_G0017906.1 mouse_genomes_project 10 84082569 84097161 - MGP_C57BL6NJ_P0026758 Btbd2 protein_coding protein_coding MGP_C57BL6NJ_T0026005.1 MGP_C57BL6NJ_G0017728.1 mouse_genomes_project 10 71551289 71555082 - MGP_C57BL6NJ_P0026005 A930033H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0003225.1 MGP_C57BL6NJ_G0002996.1 mouse_genomes_project 10 90794006 90831300 + Gm16268 antisense antisense MGP_C57BL6NJ_T0025399.1 MGP_C57BL6NJ_G0017544.1 mouse_genomes_project 10 38459269 38460508 - MGP_C57BL6NJ_P0025399 Rfpl4b protein_coding protein_coding MGP_C57BL6NJ_T0003215.1 MGP_C57BL6NJ_G0002988.1 mouse_genomes_project 10 84942589 84944594 + Gm16104 antisense antisense MGP_C57BL6NJ_T0027247.1 MGP_C57BL6NJ_G0018038.1 mouse_genomes_project 10 93955092 93976563 - MGP_C57BL6NJ_P0027247 Actr6 protein_coding protein_coding MGP_C57BL6NJ_T0025591.1 MGP_C57BL6NJ_G0017602.1 mouse_genomes_project 10 45531294 45564112 + MGP_C57BL6NJ_P0025591 Popdc3 protein_coding protein_coding MGP_C57BL6NJ_T0025592.1 MGP_C57BL6NJ_G0017602.1 mouse_genomes_project 10 45531391 45563777 + MGP_C57BL6NJ_P0025592 Popdc3 protein_coding protein_coding MGP_C57BL6NJ_T0028051.1 MGP_C57BL6NJ_G0018310.1 mouse_genomes_project 10 137932383 137936087 + MGP_C57BL6NJ_P0028051 protein_coding protein_coding MGP_C57BL6NJ_T0009807.1 MGP_C57BL6NJ_G0007892.1 mouse_genomes_project 10 96560280 96560364 - Mir1251 miRNA miRNA MGP_C57BL6NJ_T0025707.1 MGP_C57BL6NJ_G0017646.1 mouse_genomes_project 10 59928006 59928291 + MGP_C57BL6NJ_P0025707 BB019430 protein_coding protein_coding MGP_C57BL6NJ_T0025316.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615231 27842606 + MGP_C57BL6NJ_P0025316 Themis protein_coding protein_coding MGP_C57BL6NJ_T0025317.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615231 27742117 + MGP_C57BL6NJ_P0025317 Themis protein_coding protein_coding MGP_C57BL6NJ_T0025318.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615266 27717128 + Themis protein_coding retained_intron MGP_C57BL6NJ_T0025319.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615268 27750335 + MGP_C57BL6NJ_P0025319 Themis protein_coding protein_coding MGP_C57BL6NJ_T0025320.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615498 27842609 + MGP_C57BL6NJ_P0025320 Themis protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025321.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615504 27734139 + MGP_C57BL6NJ_P0025321 Themis protein_coding protein_coding MGP_C57BL6NJ_T0025322.1 MGP_C57BL6NJ_G0017505.1 mouse_genomes_project 10 27615504 27691229 + MGP_C57BL6NJ_P0025322 Themis protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099677.1 MGP_C57BL6NJ_G0037723.1 mouse_genomes_project 10 29550322 29550424 + Gm22623 snRNA snRNA MGP_C57BL6NJ_T0009815.1 MGP_C57BL6NJ_G0007900.1 mouse_genomes_project 10 102580573 102580658 + Mir3966 miRNA miRNA MGP_C57BL6NJ_T0027470.1 MGP_C57BL6NJ_G0018095.1 mouse_genomes_project 10 108139004 108148642 - MGP_C57BL6NJ_P0027470 Nts protein_coding protein_coding MGP_C57BL6NJ_T0003167.1 MGP_C57BL6NJ_G0002951.1 mouse_genomes_project 10 26291777 26299142 + 4930579H20Rik antisense antisense MGP_C57BL6NJ_T0027553.1 MGP_C57BL6NJ_G0018128.1 mouse_genomes_project 10 121119811 121542146 - MGP_C57BL6NJ_P0027553 Trhde protein_coding protein_coding MGP_C57BL6NJ_T0027554.1 MGP_C57BL6NJ_G0018128.1 mouse_genomes_project 10 121291074 121543030 - Trhde protein_coding retained_intron MGP_C57BL6NJ_T0027555.1 MGP_C57BL6NJ_G0018128.1 mouse_genomes_project 10 121525606 121542093 - Trhde protein_coding retained_intron MGP_C57BL6NJ_T0025156.1 MGP_C57BL6NJ_G0017447.1 mouse_genomes_project 10 18002111 18005654 - MGP_C57BL6NJ_P0025156 Slc35d3 protein_coding protein_coding MGP_C57BL6NJ_T0098946.1 MGP_C57BL6NJ_G0037010.1 mouse_genomes_project 10 29745033 29745127 - Gm24189 rRNA rRNA MGP_C57BL6NJ_T0027753.1 MGP_C57BL6NJ_G0018194.1 mouse_genomes_project 10 135034488 135046611 - MGP_C57BL6NJ_P0027753 Mettl21b protein_coding protein_coding MGP_C57BL6NJ_T0026290.1 MGP_C57BL6NJ_G0017784.1 mouse_genomes_project 10 79676419 79695020 - MGP_C57BL6NJ_P0026290 Col6a1 protein_coding protein_coding MGP_C57BL6NJ_T0026291.1 MGP_C57BL6NJ_G0017784.1 mouse_genomes_project 10 79682643 79686900 - Col6a1 protein_coding retained_intron MGP_C57BL6NJ_T0027560.1 MGP_C57BL6NJ_G0018132.1 mouse_genomes_project 10 122148835 122172546 - MGP_C57BL6NJ_P0027560 Tmem19 protein_coding protein_coding MGP_C57BL6NJ_T0017598.1 MGP_C57BL6NJ_G0015536.1 mouse_genomes_project 10 135314425 135315879 + Gm20492 processed_transcript processed_transcript MGP_C57BL6NJ_T0027637.1 MGP_C57BL6NJ_G0018157.1 mouse_genomes_project 10 124850828 124897843 - MGP_C57BL6NJ_P0027637 Nup107 protein_coding protein_coding MGP_C57BL6NJ_T0027638.1 MGP_C57BL6NJ_G0018157.1 mouse_genomes_project 10 124850847 124897850 - MGP_C57BL6NJ_P0027638 Nup107 protein_coding protein_coding MGP_C57BL6NJ_T0027537.1 MGP_C57BL6NJ_G0018121.1 mouse_genomes_project 10 118371880 118390216 + MGP_C57BL6NJ_P0027537 Krr1 protein_coding protein_coding MGP_C57BL6NJ_T0027538.1 MGP_C57BL6NJ_G0018121.1 mouse_genomes_project 10 118371973 118375729 + Krr1 protein_coding retained_intron MGP_C57BL6NJ_T0027539.1 MGP_C57BL6NJ_G0018121.1 mouse_genomes_project 10 118371991 118386946 + Krr1 protein_coding retained_intron MGP_C57BL6NJ_T0027540.1 MGP_C57BL6NJ_G0018121.1 mouse_genomes_project 10 118372009 118384733 + MGP_C57BL6NJ_P0027540 Krr1 protein_coding protein_coding MGP_C57BL6NJ_T0028090.1 MGP_C57BL6NJ_G0018337.1 mouse_genomes_project 10 138508010 138512177 + MGP_C57BL6NJ_P0028090 Olfr821 protein_coding protein_coding MGP_C57BL6NJ_T0028091.1 MGP_C57BL6NJ_G0018337.1 mouse_genomes_project 10 138511244 138512177 + MGP_C57BL6NJ_P0028091 Olfr821 protein_coding protein_coding MGP_C57BL6NJ_T0026273.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79485738 79489719 + Lss protein_coding processed_transcript MGP_C57BL6NJ_T0026274.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79485757 79503093 + Lss protein_coding retained_intron MGP_C57BL6NJ_T0026275.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79485757 79509704 + MGP_C57BL6NJ_P0026275 Lss protein_coding protein_coding MGP_C57BL6NJ_T0026276.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79485762 79511363 + Lss protein_coding retained_intron MGP_C57BL6NJ_T0026277.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79485832 79489874 + Lss protein_coding retained_intron MGP_C57BL6NJ_T0026278.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79496106 79496971 + MGP_C57BL6NJ_P0026278 Lss protein_coding protein_coding MGP_C57BL6NJ_T0026279.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79505434 79510843 + Lss protein_coding retained_intron MGP_C57BL6NJ_T0026280.1 MGP_C57BL6NJ_G0017780.1 mouse_genomes_project 10 79506495 79507458 + Lss protein_coding retained_intron MGP_C57BL6NJ_T0009784.1 MGP_C57BL6NJ_G0007869.1 mouse_genomes_project 10 79135015 79135099 - Mir678 miRNA miRNA MGP_C57BL6NJ_T0026802.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84421064 84488471 - MGP_C57BL6NJ_P0026802 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0026803.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84421064 84471910 - MGP_C57BL6NJ_P0026803 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0026804.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84421064 84488451 - MGP_C57BL6NJ_P0026804 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0026805.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84421069 84471923 - MGP_C57BL6NJ_P0026805 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0026806.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84423627 84468733 - MGP_C57BL6NJ_P0026806 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0026807.1 MGP_C57BL6NJ_G0017924.1 mouse_genomes_project 10 84424152 84488439 - MGP_C57BL6NJ_P0026807 Gng7 protein_coding protein_coding MGP_C57BL6NJ_T0017570.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39306156 39424509 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017571.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39306158 39424508 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017572.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39307369 39424318 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017573.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39307399 39424351 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017574.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39307442 39424503 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017575.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39307458 39424316 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017576.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39307720 39424278 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017577.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39326220 39334303 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017578.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39326312 39424484 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017579.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39343429 39420683 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017580.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39343997 39424508 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017581.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39369750 39424508 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017582.1 MGP_C57BL6NJ_G0015527.1 mouse_genomes_project 10 39413914 39424469 - E130307A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0027871.1 MGP_C57BL6NJ_G0018231.1 mouse_genomes_project 10 135863609 135865057 + MGP_C57BL6NJ_P0027871 protein_coding protein_coding MGP_C57BL6NJ_T0027872.1 MGP_C57BL6NJ_G0018231.1 mouse_genomes_project 10 135863619 135876056 + MGP_C57BL6NJ_P0027872 protein_coding protein_coding MGP_C57BL6NJ_T0009823.1 MGP_C57BL6NJ_G0007908.1 mouse_genomes_project 10 129149480 129149556 - Gm24330 miRNA miRNA MGP_C57BL6NJ_T0003217.1 MGP_C57BL6NJ_G0002990.1 mouse_genomes_project 10 85122772 85130180 - antisense antisense MGP_C57BL6NJ_T0009776.1 MGP_C57BL6NJ_G0007861.1 mouse_genomes_project 10 61558898 61558965 - Gm22117 miRNA miRNA MGP_C57BL6NJ_T0006325.1 MGP_C57BL6NJ_G0005276.1 mouse_genomes_project 10 135214247 135221642 + F420014N23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006255.1 MGP_C57BL6NJ_G0005232.1 mouse_genomes_project 10 58627462 58635429 - 4930467K11Rik lincRNA lincRNA MGP_C57BL6NJ_T0025855.1 MGP_C57BL6NJ_G0017689.1 mouse_genomes_project 10 63802229 63858546 - MGP_C57BL6NJ_P0025855 Tspan15 protein_coding protein_coding MGP_C57BL6NJ_T0028095.1 MGP_C57BL6NJ_G0018341.1 mouse_genomes_project 10 138653867 138655452 - MGP_C57BL6NJ_P0028095 Olfr825 protein_coding protein_coding MGP_C57BL6NJ_T0099685.1 MGP_C57BL6NJ_G0037731.1 mouse_genomes_project 10 45479452 45479515 + Gm27723 snRNA snRNA MGP_C57BL6NJ_T0027995.1 MGP_C57BL6NJ_G0018273.1 mouse_genomes_project 10 136948644 136966849 + MGP_C57BL6NJ_P0027995 Pmel protein_coding protein_coding MGP_C57BL6NJ_T0025537.1 MGP_C57BL6NJ_G0017583.1 mouse_genomes_project 10 42460108 42496689 + MGP_C57BL6NJ_P0025537 Snx3 protein_coding protein_coding MGP_C57BL6NJ_T0025538.1 MGP_C57BL6NJ_G0017583.1 mouse_genomes_project 10 42460109 42497272 + MGP_C57BL6NJ_P0025538 Snx3 protein_coding protein_coding MGP_C57BL6NJ_T0025539.1 MGP_C57BL6NJ_G0017583.1 mouse_genomes_project 10 42460368 42497283 + MGP_C57BL6NJ_P0025539 Snx3 protein_coding protein_coding MGP_C57BL6NJ_T0024991.1 MGP_C57BL6NJ_G0017404.1 mouse_genomes_project 10 7094784 7150020 - MGP_C57BL6NJ_P0024991 Samd5 protein_coding protein_coding MGP_C57BL6NJ_T0027996.1 MGP_C57BL6NJ_G0018274.1 mouse_genomes_project 10 136966751 137000555 - MGP_C57BL6NJ_P0027996 Dgka protein_coding protein_coding MGP_C57BL6NJ_T0025947.1 MGP_C57BL6NJ_G0017710.1 mouse_genomes_project 10 65007758 65091388 + MGP_C57BL6NJ_P0025947 Herc4 protein_coding protein_coding MGP_C57BL6NJ_T0025948.1 MGP_C57BL6NJ_G0017710.1 mouse_genomes_project 10 65008021 65091377 + MGP_C57BL6NJ_P0025948 Herc4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026711.1 MGP_C57BL6NJ_G0017895.1 mouse_genomes_project 10 83798024 83804715 - MGP_C57BL6NJ_P0026711 Mbd3 protein_coding protein_coding MGP_C57BL6NJ_T0026712.1 MGP_C57BL6NJ_G0017895.1 mouse_genomes_project 10 83798025 83805034 - MGP_C57BL6NJ_P0026712 Mbd3 protein_coding protein_coding MGP_C57BL6NJ_T0026713.1 MGP_C57BL6NJ_G0017895.1 mouse_genomes_project 10 83798325 83804906 - MGP_C57BL6NJ_P0026713 Mbd3 protein_coding protein_coding MGP_C57BL6NJ_T0026714.1 MGP_C57BL6NJ_G0017895.1 mouse_genomes_project 10 83798468 83801213 - MGP_C57BL6NJ_P0026714 Mbd3 protein_coding protein_coding MGP_C57BL6NJ_T0026715.1 MGP_C57BL6NJ_G0017895.1 mouse_genomes_project 10 83799388 83800820 - Mbd3 protein_coding processed_transcript MGP_C57BL6NJ_T0003230.1 MGP_C57BL6NJ_G0003000.1 mouse_genomes_project 10 92542868 92548521 - Gm16235 antisense antisense MGP_C57BL6NJ_T0003231.1 MGP_C57BL6NJ_G0003000.1 mouse_genomes_project 10 92543786 92544567 - Gm16235 antisense antisense MGP_C57BL6NJ_T0025027.1 MGP_C57BL6NJ_G0017412.1 mouse_genomes_project 10 8926428 9049101 + MGP_C57BL6NJ_P0025027 Epm2a protein_coding protein_coding MGP_C57BL6NJ_T0025028.1 MGP_C57BL6NJ_G0017412.1 mouse_genomes_project 10 8926477 9034654 + Epm2a protein_coding processed_transcript MGP_C57BL6NJ_T0027389.1 MGP_C57BL6NJ_G0018065.1 mouse_genomes_project 10 99488892 99648416 - MGP_C57BL6NJ_P0027389 Plxnc1 protein_coding protein_coding MGP_C57BL6NJ_T0027390.1 MGP_C57BL6NJ_G0018065.1 mouse_genomes_project 10 99536153 99542745 - Plxnc1 protein_coding retained_intron MGP_C57BL6NJ_T0027391.1 MGP_C57BL6NJ_G0018065.1 mouse_genomes_project 10 99553391 99571310 - MGP_C57BL6NJ_P0027391 Plxnc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027392.1 MGP_C57BL6NJ_G0018065.1 mouse_genomes_project 10 99571091 99625355 - Plxnc1 protein_coding retained_intron MGP_C57BL6NJ_T0027966.1 MGP_C57BL6NJ_G0018263.1 mouse_genomes_project 10 136732683 136749904 - MGP_C57BL6NJ_P0027966 Esyt1 protein_coding protein_coding MGP_C57BL6NJ_T0027863.1 MGP_C57BL6NJ_G0018225.1 mouse_genomes_project 10 135780292 135796341 + MGP_C57BL6NJ_P0027863 Myo1a protein_coding protein_coding MGP_C57BL6NJ_T0027864.1 MGP_C57BL6NJ_G0018225.1 mouse_genomes_project 10 135780378 135808675 + MGP_C57BL6NJ_P0027864 Myo1a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024897.1 MGP_C57BL6NJ_G0017385.1 mouse_genomes_project 10 2976079 2982520 - MGP_C57BL6NJ_P0024897 Fbxo5 protein_coding protein_coding MGP_C57BL6NJ_T0024898.1 MGP_C57BL6NJ_G0017385.1 mouse_genomes_project 10 2979119 2981520 - Fbxo5 protein_coding processed_transcript MGP_C57BL6NJ_T0026552.1 MGP_C57BL6NJ_G0017860.1 mouse_genomes_project 10 83221470 83225828 + MGP_C57BL6NJ_P0026552 Elane protein_coding protein_coding MGP_C57BL6NJ_T0026516.1 MGP_C57BL6NJ_G0017855.1 mouse_genomes_project 10 83112477 83143371 + MGP_C57BL6NJ_P0026516 Palm protein_coding protein_coding MGP_C57BL6NJ_T0026517.1 MGP_C57BL6NJ_G0017855.1 mouse_genomes_project 10 83112477 83143371 + MGP_C57BL6NJ_P0026517 Palm protein_coding protein_coding MGP_C57BL6NJ_T0025400.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38606483 38651845 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0025401.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38606483 38763013 + MGP_C57BL6NJ_P0025401 Lama4 protein_coding protein_coding MGP_C57BL6NJ_T0025402.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38606521 38694374 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0025403.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38606538 38679631 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0025404.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38606640 38701647 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0025405.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38700932 38704795 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0025406.1 MGP_C57BL6NJ_G0017545.1 mouse_genomes_project 10 38758607 38762922 + Lama4 protein_coding retained_intron MGP_C57BL6NJ_T0100989.1 MGP_C57BL6NJ_G0039035.1 mouse_genomes_project 10 110966068 110966197 - Gm25422 snoRNA snoRNA MGP_C57BL6NJ_T0025496.1 MGP_C57BL6NJ_G0017574.1 mouse_genomes_project 10 41388049 41399672 + MGP_C57BL6NJ_P0025496 Cd164 protein_coding protein_coding MGP_C57BL6NJ_T0025497.1 MGP_C57BL6NJ_G0017574.1 mouse_genomes_project 10 41388136 41393897 + Cd164 protein_coding retained_intron MGP_C57BL6NJ_T0025498.1 MGP_C57BL6NJ_G0017574.1 mouse_genomes_project 10 41388527 41397670 + MGP_C57BL6NJ_P0025498 Cd164 protein_coding protein_coding MGP_C57BL6NJ_T0025499.1 MGP_C57BL6NJ_G0017574.1 mouse_genomes_project 10 41388679 41395501 + Cd164 protein_coding processed_transcript MGP_C57BL6NJ_T0000943.1 MGP_C57BL6NJ_G0000854.1 mouse_genomes_project 10 12084340 12085166 + TEC TEC MGP_C57BL6NJ_T0003159.1 MGP_C57BL6NJ_G0002945.1 mouse_genomes_project 10 12451270 12455339 + Gm16234 antisense antisense MGP_C57BL6NJ_T0027546.1 MGP_C57BL6NJ_G0018123.1 mouse_genomes_project 10 118480847 118517842 + MGP_C57BL6NJ_P0027546 Glipr1l1 protein_coding protein_coding MGP_C57BL6NJ_T0099213.1 MGP_C57BL6NJ_G0037277.1 mouse_genomes_project 10 27909244 27909398 - Gm22811 ribozyme ribozyme MGP_C57BL6NJ_T0026563.1 MGP_C57BL6NJ_G0017864.1 mouse_genomes_project 10 83253786 83254071 + MGP_C57BL6NJ_P0026563 Gm26602 protein_coding protein_coding MGP_C57BL6NJ_T0027308.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97239214 97559027 - MGP_C57BL6NJ_P0027308 Cfap54 protein_coding protein_coding MGP_C57BL6NJ_T0027309.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97239774 97559005 - MGP_C57BL6NJ_P0027309 Cfap54 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027310.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97261235 97306314 - MGP_C57BL6NJ_P0027310 Cfap54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027311.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97371683 97412909 - Cfap54 protein_coding processed_transcript MGP_C57BL6NJ_T0027312.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97388115 97412917 - MGP_C57BL6NJ_P0027312 Cfap54 protein_coding protein_coding MGP_C57BL6NJ_T0027313.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97445475 97511608 - MGP_C57BL6NJ_P0027313 Cfap54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027314.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97498598 97501989 - Cfap54 protein_coding processed_transcript MGP_C57BL6NJ_T0027315.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97505212 97559027 - MGP_C57BL6NJ_P0027315 Cfap54 protein_coding protein_coding MGP_C57BL6NJ_T0027316.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97512205 97559005 - MGP_C57BL6NJ_P0027316 Cfap54 protein_coding protein_coding MGP_C57BL6NJ_T0027317.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97537492 97559027 - Cfap54 protein_coding retained_intron MGP_C57BL6NJ_T0027318.1 MGP_C57BL6NJ_G0018046.1 mouse_genomes_project 10 97543118 97546607 - Cfap54 protein_coding processed_transcript MGP_C57BL6NJ_T0026188.1 MGP_C57BL6NJ_G0017752.1 mouse_genomes_project 10 78411514 78421681 - MGP_C57BL6NJ_P0026188 Lrrc75b protein_coding protein_coding MGP_C57BL6NJ_T0028035.1 MGP_C57BL6NJ_G0018297.1 mouse_genomes_project 10 137619508 137621700 + MGP_C57BL6NJ_P0028035 protein_coding protein_coding MGP_C57BL6NJ_T0003168.1 MGP_C57BL6NJ_G0002952.1 mouse_genomes_project 10 32862446 32891994 + Gm15939 antisense antisense MGP_C57BL6NJ_T0026564.1 MGP_C57BL6NJ_G0017865.1 mouse_genomes_project 10 83261575 83266601 + MGP_C57BL6NJ_P0026564 Kiss1r protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006313.1 MGP_C57BL6NJ_G0005268.1 mouse_genomes_project 10 117861855 117863003 - Gm28592 lincRNA lincRNA MGP_C57BL6NJ_T0100983.1 MGP_C57BL6NJ_G0039029.1 mouse_genomes_project 10 97152448 97152593 - Gm24241 snoRNA snoRNA MGP_C57BL6NJ_T0027583.1 MGP_C57BL6NJ_G0018140.1 mouse_genomes_project 10 123199440 123301595 + MGP_C57BL6NJ_P0027583 Ptprb protein_coding protein_coding MGP_C57BL6NJ_T0012725.1 MGP_C57BL6NJ_G0010770.1 mouse_genomes_project 10 81780395 81780904 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009805.1 MGP_C57BL6NJ_G0007890.1 mouse_genomes_project 10 90655087 90655220 - Gm25745 miRNA miRNA MGP_C57BL6NJ_T0027608.1 MGP_C57BL6NJ_G0018147.1 mouse_genomes_project 10 124028935 124030363 + MGP_C57BL6NJ_P0027608 Lrrc10 protein_coding protein_coding MGP_C57BL6NJ_T0026380.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164147 81171067 + MGP_C57BL6NJ_P0026380 1810043G02Rik protein_coding protein_coding MGP_C57BL6NJ_T0026381.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164277 81170888 + 1810043G02Rik protein_coding retained_intron MGP_C57BL6NJ_T0026382.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164294 81171067 + 1810043G02Rik protein_coding retained_intron MGP_C57BL6NJ_T0026383.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164296 81172538 + MGP_C57BL6NJ_P0026383 1810043G02Rik protein_coding protein_coding MGP_C57BL6NJ_T0026384.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164304 81171069 + 1810043G02Rik protein_coding retained_intron MGP_C57BL6NJ_T0026385.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81164316 81166146 + 1810043G02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0026386.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81166116 81170112 + 1810043G02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0026387.1 MGP_C57BL6NJ_G0017808.1 mouse_genomes_project 10 81167396 81168529 + 1810043G02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0026097.1 MGP_C57BL6NJ_G0017739.1 mouse_genomes_project 10 73858047 73874276 - MGP_C57BL6NJ_P0026097 Cisd1 protein_coding protein_coding MGP_C57BL6NJ_T0017583.1 MGP_C57BL6NJ_G0015528.1 mouse_genomes_project 10 41439007 41447468 + 5730435O14Rik processed_transcript antisense MGP_C57BL6NJ_T0017584.1 MGP_C57BL6NJ_G0015528.1 mouse_genomes_project 10 41446555 41447457 + 5730435O14Rik processed_transcript retained_intron MGP_C57BL6NJ_T0011527.1 MGP_C57BL6NJ_G0009612.1 mouse_genomes_project 10 40705077 40705320 - Gm22948 misc_RNA misc_RNA MGP_C57BL6NJ_T0017567.1 MGP_C57BL6NJ_G0015526.1 mouse_genomes_project 10 36643401 36647401 + 5930403N24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017568.1 MGP_C57BL6NJ_G0015526.1 mouse_genomes_project 10 36643557 36645714 + 5930403N24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017569.1 MGP_C57BL6NJ_G0015526.1 mouse_genomes_project 10 36643913 36656123 + 5930403N24Rik processed_transcript lincRNA MGP_C57BL6NJ_T0027097.1 MGP_C57BL6NJ_G0017997.1 mouse_genomes_project 10 88917730 88937341 + MGP_C57BL6NJ_P0027097 Tmem263 protein_coding protein_coding MGP_C57BL6NJ_T0003228.1 MGP_C57BL6NJ_G0002999.1 mouse_genomes_project 10 91875259 91877245 - Igf1os antisense antisense MGP_C57BL6NJ_T0003229.1 MGP_C57BL6NJ_G0002999.1 mouse_genomes_project 10 91875271 91913003 - Igf1os antisense antisense MGP_C57BL6NJ_T0009816.1 MGP_C57BL6NJ_G0007901.1 mouse_genomes_project 10 107344848 107344929 + Mir3059 miRNA miRNA MGP_C57BL6NJ_T0027416.1 MGP_C57BL6NJ_G0018075.1 mouse_genomes_project 10 102731073 102739325 + MGP_C57BL6NJ_P0027416 Lum protein_coding protein_coding MGP_C57BL6NJ_T0003160.1 MGP_C57BL6NJ_G0002946.1 mouse_genomes_project 10 12549923 12552009 - B230364G03Rik antisense antisense MGP_C57BL6NJ_T0026217.1 MGP_C57BL6NJ_G0017757.1 mouse_genomes_project 10 78642807 78646217 - MGP_C57BL6NJ_P0026217 Ddt protein_coding protein_coding MGP_C57BL6NJ_T0026218.1 MGP_C57BL6NJ_G0017757.1 mouse_genomes_project 10 78642810 78646597 - MGP_C57BL6NJ_P0026218 Ddt protein_coding protein_coding MGP_C57BL6NJ_T0025881.1 MGP_C57BL6NJ_G0017693.1 mouse_genomes_project 10 64074996 64095560 - MGP_C57BL6NJ_P0025881 Supv3l1 protein_coding protein_coding MGP_C57BL6NJ_T0025882.1 MGP_C57BL6NJ_G0017693.1 mouse_genomes_project 10 64075042 64095505 - MGP_C57BL6NJ_P0025882 Supv3l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025883.1 MGP_C57BL6NJ_G0017693.1 mouse_genomes_project 10 64075127 64076409 - Supv3l1 protein_coding retained_intron MGP_C57BL6NJ_T0025884.1 MGP_C57BL6NJ_G0017693.1 mouse_genomes_project 10 64075230 64076756 - Supv3l1 protein_coding retained_intron MGP_C57BL6NJ_T0025885.1 MGP_C57BL6NJ_G0017693.1 mouse_genomes_project 10 64078146 64078949 - Supv3l1 protein_coding processed_transcript MGP_C57BL6NJ_T0028063.1 MGP_C57BL6NJ_G0018317.1 mouse_genomes_project 10 138106256 138107183 - MGP_C57BL6NJ_P0028063 Olfr803 protein_coding protein_coding MGP_C57BL6NJ_T0027445.1 MGP_C57BL6NJ_G0018091.1 mouse_genomes_project 10 105926495 106016643 + MGP_C57BL6NJ_P0027445 Cep290 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027446.1 MGP_C57BL6NJ_G0018091.1 mouse_genomes_project 10 105926495 106017431 + MGP_C57BL6NJ_P0027446 Cep290 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027447.1 MGP_C57BL6NJ_G0018091.1 mouse_genomes_project 10 105927335 106017979 + MGP_C57BL6NJ_P0027447 Cep290 protein_coding protein_coding MGP_C57BL6NJ_T0009790.1 MGP_C57BL6NJ_G0007875.1 mouse_genomes_project 10 81763933 81764055 + Gm27541 miRNA miRNA MGP_C57BL6NJ_T0027865.1 MGP_C57BL6NJ_G0018226.1 mouse_genomes_project 10 135799931 135808696 + MGP_C57BL6NJ_P0027865 Tac2 protein_coding protein_coding MGP_C57BL6NJ_T0027866.1 MGP_C57BL6NJ_G0018226.1 mouse_genomes_project 10 135800845 135808696 + MGP_C57BL6NJ_P0027866 Tac2 protein_coding protein_coding MGP_C57BL6NJ_T0026935.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85031209 85041353 - MGP_C57BL6NJ_P0026935 Ncln protein_coding protein_coding MGP_C57BL6NJ_T0026936.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85031417 85041287 - MGP_C57BL6NJ_P0026936 Ncln protein_coding protein_coding MGP_C57BL6NJ_T0026937.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85032058 85033358 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0026938.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85032250 85033178 - MGP_C57BL6NJ_P0026938 Ncln protein_coding protein_coding MGP_C57BL6NJ_T0026939.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85032300 85033604 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0026940.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85032340 85033602 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0026941.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85033186 85035229 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0026942.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85035885 85037016 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0026943.1 MGP_C57BL6NJ_G0017955.1 mouse_genomes_project 10 85038283 85041303 - Ncln protein_coding retained_intron MGP_C57BL6NJ_T0009791.1 MGP_C57BL6NJ_G0007876.1 mouse_genomes_project 10 82829857 82829919 - Mir6909 miRNA miRNA MGP_C57BL6NJ_T0025011.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8221469 8652121 - MGP_C57BL6NJ_P0025011 Grm1 protein_coding protein_coding MGP_C57BL6NJ_T0025012.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8223998 8652070 - MGP_C57BL6NJ_P0025012 Grm1 protein_coding protein_coding MGP_C57BL6NJ_T0025013.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8224216 8650737 - MGP_C57BL6NJ_P0025013 Grm1 protein_coding protein_coding MGP_C57BL6NJ_T0025014.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8224863 8264448 - Grm1 protein_coding processed_transcript MGP_C57BL6NJ_T0025015.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8292206 8294833 - Grm1 protein_coding processed_transcript MGP_C57BL6NJ_T0025016.1 MGP_C57BL6NJ_G0017409.1 mouse_genomes_project 10 8650269 8652015 - Grm1 protein_coding processed_transcript MGP_C57BL6NJ_T0009766.1 MGP_C57BL6NJ_G0007851.1 mouse_genomes_project 10 25168298 25168424 - Gm27754 miRNA miRNA MGP_C57BL6NJ_T0026633.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83516116 83526218 + MGP_C57BL6NJ_P0026633 Midn protein_coding protein_coding MGP_C57BL6NJ_T0026634.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83516116 83526219 + MGP_C57BL6NJ_P0026634 Midn protein_coding protein_coding MGP_C57BL6NJ_T0026635.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83516961 83518128 + MGP_C57BL6NJ_P0026635 Midn protein_coding protein_coding MGP_C57BL6NJ_T0026636.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83517735 83521538 + Midn protein_coding processed_transcript MGP_C57BL6NJ_T0026637.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83518308 83521719 + MGP_C57BL6NJ_P0026637 Midn protein_coding protein_coding MGP_C57BL6NJ_T0026638.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83519005 83522323 + MGP_C57BL6NJ_P0026638 Midn protein_coding protein_coding MGP_C57BL6NJ_T0026639.1 MGP_C57BL6NJ_G0017879.1 mouse_genomes_project 10 83519089 83521547 + MGP_C57BL6NJ_P0026639 Midn protein_coding protein_coding MGP_C57BL6NJ_T0027058.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87199057 87248458 - MGP_C57BL6NJ_P0027058 Aldh1l2 protein_coding protein_coding MGP_C57BL6NJ_T0027059.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87201815 87204496 - Aldh1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0027060.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87203218 87205966 - Aldh1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0027061.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87203220 87248525 - Aldh1l2 protein_coding retained_intron MGP_C57BL6NJ_T0027062.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87208283 87218237 - Aldh1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0027063.1 MGP_C57BL6NJ_G0017986.1 mouse_genomes_project 10 87212484 87223837 - Aldh1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0027575.1 MGP_C57BL6NJ_G0018137.1 mouse_genomes_project 10 122676083 122713177 + MGP_C57BL6NJ_P0027575 Tspan8 protein_coding protein_coding MGP_C57BL6NJ_T0027576.1 MGP_C57BL6NJ_G0018137.1 mouse_genomes_project 10 122676083 122713177 + MGP_C57BL6NJ_P0027576 Tspan8 protein_coding protein_coding MGP_C57BL6NJ_T0027577.1 MGP_C57BL6NJ_G0018137.1 mouse_genomes_project 10 122676083 122713177 + MGP_C57BL6NJ_P0027577 Tspan8 protein_coding protein_coding MGP_C57BL6NJ_T0098800.1 MGP_C57BL6NJ_G0036864.1 mouse_genomes_project 10 75734778 75735250 + pseudogene pseudogene MGP_C57BL6NJ_T0012741.1 MGP_C57BL6NJ_G0010786.1 mouse_genomes_project 10 135340982 135342095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025059.1 MGP_C57BL6NJ_G0017417.1 mouse_genomes_project 10 10828087 10859563 - MGP_C57BL6NJ_P0025059 Zc2hc1b protein_coding protein_coding MGP_C57BL6NJ_T0026945.1 MGP_C57BL6NJ_G0017957.1 mouse_genomes_project 10 85047041 85052909 - Gna15 protein_coding retained_intron MGP_C57BL6NJ_T0026946.1 MGP_C57BL6NJ_G0017957.1 mouse_genomes_project 10 85047048 85069716 - MGP_C57BL6NJ_P0026946 Gna15 protein_coding protein_coding MGP_C57BL6NJ_T0026947.1 MGP_C57BL6NJ_G0017957.1 mouse_genomes_project 10 85047822 85057373 - Gna15 protein_coding retained_intron MGP_C57BL6NJ_T0027760.1 MGP_C57BL6NJ_G0018197.1 mouse_genomes_project 10 135060296 135065461 - MGP_C57BL6NJ_P0027760 March9 protein_coding protein_coding MGP_C57BL6NJ_T0027330.1 MGP_C57BL6NJ_G0018052.1 mouse_genomes_project 10 98084777 98138624 + MGP_C57BL6NJ_P0027330 Ccdc38 protein_coding protein_coding MGP_C57BL6NJ_T0027331.1 MGP_C57BL6NJ_G0018052.1 mouse_genomes_project 10 98096942 98105036 + Ccdc38 protein_coding retained_intron MGP_C57BL6NJ_T0027332.1 MGP_C57BL6NJ_G0018052.1 mouse_genomes_project 10 98104357 98105081 + Ccdc38 protein_coding retained_intron MGP_C57BL6NJ_T0027333.1 MGP_C57BL6NJ_G0018052.1 mouse_genomes_project 10 98104360 98135338 + Ccdc38 protein_coding processed_transcript MGP_C57BL6NJ_T0027334.1 MGP_C57BL6NJ_G0018052.1 mouse_genomes_project 10 98116068 98125260 + Ccdc38 protein_coding processed_transcript MGP_C57BL6NJ_T0099716.1 MGP_C57BL6NJ_G0037762.1 mouse_genomes_project 10 109964839 109964901 - Gm22339 snRNA snRNA MGP_C57BL6NJ_T0025500.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41408463 41422467 - protein_coding processed_transcript MGP_C57BL6NJ_T0025501.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41408466 41481265 - MGP_C57BL6NJ_P0025501 protein_coding protein_coding MGP_C57BL6NJ_T0025502.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41408466 41459551 - MGP_C57BL6NJ_P0025502 protein_coding protein_coding MGP_C57BL6NJ_T0025503.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41408909 41602159 - MGP_C57BL6NJ_P0025503 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025504.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41409032 41450199 - MGP_C57BL6NJ_P0025504 protein_coding protein_coding MGP_C57BL6NJ_T0025505.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41418545 41430294 - protein_coding retained_intron MGP_C57BL6NJ_T0025506.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41420225 41601512 - MGP_C57BL6NJ_P0025506 protein_coding protein_coding MGP_C57BL6NJ_T0025507.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41420344 41423035 - protein_coding retained_intron MGP_C57BL6NJ_T0025508.1 MGP_C57BL6NJ_G0017575.1 mouse_genomes_project 10 41451216 41459844 - protein_coding processed_transcript MGP_C57BL6NJ_T0027049.1 MGP_C57BL6NJ_G0017981.1 mouse_genomes_project 10 86542748 86582605 + MGP_C57BL6NJ_P0027049 protein_coding protein_coding MGP_C57BL6NJ_T0025704.1 MGP_C57BL6NJ_G0017643.1 mouse_genomes_project 10 59646303 59697393 + MGP_C57BL6NJ_P0025704 Ranbp2 protein_coding protein_coding MGP_C57BL6NJ_T0027208.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92625488 92719168 - MGP_C57BL6NJ_P0027208 Mybpc1 protein_coding protein_coding MGP_C57BL6NJ_T0027209.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92625491 92631705 - Mybpc1 protein_coding retained_intron MGP_C57BL6NJ_T0027210.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92625548 92719041 - MGP_C57BL6NJ_P0027210 Mybpc1 protein_coding protein_coding MGP_C57BL6NJ_T0027211.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92626708 92645069 - MGP_C57BL6NJ_P0027211 Mybpc1 protein_coding protein_coding MGP_C57BL6NJ_T0027212.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92634708 92645121 - Mybpc1 protein_coding retained_intron MGP_C57BL6NJ_T0027213.1 MGP_C57BL6NJ_G0018028.1 mouse_genomes_project 10 92634799 92662123 - MGP_C57BL6NJ_P0027213 Mybpc1 protein_coding protein_coding MGP_C57BL6NJ_T0025394.1 MGP_C57BL6NJ_G0017542.1 mouse_genomes_project 10 36460964 36490399 + MGP_C57BL6NJ_P0025394 Hdac2 protein_coding protein_coding MGP_C57BL6NJ_T0025395.1 MGP_C57BL6NJ_G0017542.1 mouse_genomes_project 10 36460990 36482547 + MGP_C57BL6NJ_P0025395 Hdac2 protein_coding protein_coding MGP_C57BL6NJ_T0025396.1 MGP_C57BL6NJ_G0017542.1 mouse_genomes_project 10 36478186 36490398 + Hdac2 protein_coding processed_transcript MGP_C57BL6NJ_T0025397.1 MGP_C57BL6NJ_G0017542.1 mouse_genomes_project 10 36486681 36490121 + Hdac2 protein_coding retained_intron MGP_C57BL6NJ_T0028013.1 MGP_C57BL6NJ_G0018284.1 mouse_genomes_project 10 137191052 137196695 - MGP_C57BL6NJ_P0028013 Bloc1s1 protein_coding protein_coding MGP_C57BL6NJ_T0028016.1 MGP_C57BL6NJ_G0018284.1 mouse_genomes_project 10 137193084 137196695 - MGP_C57BL6NJ_P0028016 Bloc1s1 protein_coding protein_coding MGP_C57BL6NJ_T0028017.1 MGP_C57BL6NJ_G0018284.1 mouse_genomes_project 10 137193117 137197206 - MGP_C57BL6NJ_P0028017 Bloc1s1 protein_coding protein_coding MGP_C57BL6NJ_T0028018.1 MGP_C57BL6NJ_G0018284.1 mouse_genomes_project 10 137193213 137196197 - Bloc1s1 protein_coding processed_transcript MGP_C57BL6NJ_T0028019.1 MGP_C57BL6NJ_G0018284.1 mouse_genomes_project 10 137195686 137196695 - Bloc1s1 protein_coding retained_intron MGP_C57BL6NJ_T0027471.1 MGP_C57BL6NJ_G0018096.1 mouse_genomes_project 10 108174502 108212104 + MGP_C57BL6NJ_P0027471 Rassf9 protein_coding protein_coding MGP_C57BL6NJ_T0006329.1 MGP_C57BL6NJ_G0005280.1 mouse_genomes_project 10 137245626 137254032 + 9030616G12Rik lincRNA lincRNA MGP_C57BL6NJ_T0100957.1 MGP_C57BL6NJ_G0039003.1 mouse_genomes_project 10 28407762 28407890 + Gm24286 snoRNA snoRNA MGP_C57BL6NJ_T0027085.1 MGP_C57BL6NJ_G0017992.1 mouse_genomes_project 10 88342436 88381978 + MGP_C57BL6NJ_P0027085 Tcp11l2 protein_coding protein_coding MGP_C57BL6NJ_T0027086.1 MGP_C57BL6NJ_G0017992.1 mouse_genomes_project 10 88342707 88363444 + Tcp11l2 protein_coding retained_intron MGP_C57BL6NJ_T0027087.1 MGP_C57BL6NJ_G0017992.1 mouse_genomes_project 10 88362796 88372609 + Tcp11l2 protein_coding retained_intron MGP_C57BL6NJ_T0009796.1 MGP_C57BL6NJ_G0007881.1 mouse_genomes_project 10 84286599 84286673 + Mir1982 miRNA miRNA MGP_C57BL6NJ_T0027556.1 MGP_C57BL6NJ_G0018129.1 mouse_genomes_project 10 121855625 121973549 - MGP_C57BL6NJ_P0027556 Tph2 protein_coding protein_coding MGP_C57BL6NJ_T0027557.1 MGP_C57BL6NJ_G0018129.1 mouse_genomes_project 10 121962605 121964085 - Tph2 protein_coding processed_transcript MGP_C57BL6NJ_T0100973.1 MGP_C57BL6NJ_G0039019.1 mouse_genomes_project 10 64455668 64455733 - Snord98 snoRNA snoRNA MGP_C57BL6NJ_T0027428.1 MGP_C57BL6NJ_G0018083.1 mouse_genomes_project 10 104394057 104399146 + MGP_C57BL6NJ_P0027428 Galnt4 protein_coding protein_coding MGP_C57BL6NJ_T0025363.1 MGP_C57BL6NJ_G0017524.1 mouse_genomes_project 10 32759387 32862970 - MGP_C57BL6NJ_P0025363 Clvs2 protein_coding protein_coding MGP_C57BL6NJ_T0025364.1 MGP_C57BL6NJ_G0017524.1 mouse_genomes_project 10 32786719 32862397 - Clvs2 protein_coding processed_transcript MGP_C57BL6NJ_T0025365.1 MGP_C57BL6NJ_G0017524.1 mouse_genomes_project 10 32833913 32862820 - Clvs2 protein_coding processed_transcript MGP_C57BL6NJ_T0025366.1 MGP_C57BL6NJ_G0017524.1 mouse_genomes_project 10 32839643 32862823 - MGP_C57BL6NJ_P0025366 Clvs2 protein_coding protein_coding MGP_C57BL6NJ_T0003155.1 MGP_C57BL6NJ_G0002942.1 mouse_genomes_project 10 5121483 5122588 + B430219N15Rik antisense antisense MGP_C57BL6NJ_T0003156.1 MGP_C57BL6NJ_G0002942.1 mouse_genomes_project 10 5121566 5122656 + B430219N15Rik antisense antisense MGP_C57BL6NJ_T0024859.1 MGP_C57BL6NJ_G0017375.1 mouse_genomes_project 10 1253806 1367214 + MGP_C57BL6NJ_P0024859 Akap12 protein_coding protein_coding MGP_C57BL6NJ_T0025269.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571562 23616244 + MGP_C57BL6NJ_P0025269 Med23 protein_coding protein_coding MGP_C57BL6NJ_T0025270.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571613 23596711 + Med23 protein_coding retained_intron MGP_C57BL6NJ_T0025271.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571613 23609128 + MGP_C57BL6NJ_P0025271 Med23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025272.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571623 23616023 + MGP_C57BL6NJ_P0025272 Med23 protein_coding protein_coding MGP_C57BL6NJ_T0025273.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571674 23600853 + Med23 protein_coding processed_transcript MGP_C57BL6NJ_T0025274.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23571886 23580033 + MGP_C57BL6NJ_P0025274 Med23 protein_coding protein_coding MGP_C57BL6NJ_T0025275.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23572220 23577246 + Med23 protein_coding retained_intron MGP_C57BL6NJ_T0025276.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23578522 23593870 + MGP_C57BL6NJ_P0025276 Med23 protein_coding protein_coding MGP_C57BL6NJ_T0025277.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23589733 23615583 + MGP_C57BL6NJ_P0025277 Med23 protein_coding protein_coding MGP_C57BL6NJ_T0025278.1 MGP_C57BL6NJ_G0017493.1 mouse_genomes_project 10 23592249 23593862 + Med23 protein_coding retained_intron MGP_C57BL6NJ_T0027960.1 MGP_C57BL6NJ_G0018260.1 mouse_genomes_project 10 136675052 136709756 + MGP_C57BL6NJ_P0027960 Smarcc2 protein_coding protein_coding MGP_C57BL6NJ_T0027961.1 MGP_C57BL6NJ_G0018260.1 mouse_genomes_project 10 136675052 136709756 + MGP_C57BL6NJ_P0027961 Smarcc2 protein_coding protein_coding MGP_C57BL6NJ_T0027962.1 MGP_C57BL6NJ_G0018260.1 mouse_genomes_project 10 136675052 136709756 + MGP_C57BL6NJ_P0027962 Smarcc2 protein_coding protein_coding MGP_C57BL6NJ_T0009781.1 MGP_C57BL6NJ_G0007866.1 mouse_genomes_project 10 63811000 63811061 - Mir7662 miRNA miRNA MGP_C57BL6NJ_T0006304.1 MGP_C57BL6NJ_G0005261.1 mouse_genomes_project 10 98499381 98504198 + 4930471D02Rik lincRNA lincRNA MGP_C57BL6NJ_T0009768.1 MGP_C57BL6NJ_G0007853.1 mouse_genomes_project 10 41557963 41558018 + Mir3473b miRNA miRNA MGP_C57BL6NJ_T0025358.1 MGP_C57BL6NJ_G0017522.1 mouse_genomes_project 10 30838484 32142089 - MGP_C57BL6NJ_P0025358 Nkain2 protein_coding protein_coding MGP_C57BL6NJ_T0025359.1 MGP_C57BL6NJ_G0017522.1 mouse_genomes_project 10 31554618 31650959 - MGP_C57BL6NJ_P0025359 Nkain2 protein_coding protein_coding MGP_C57BL6NJ_T0025360.1 MGP_C57BL6NJ_G0017522.1 mouse_genomes_project 10 32141532 32142090 - MGP_C57BL6NJ_P0025360 Nkain2 protein_coding protein_coding MGP_C57BL6NJ_T0026228.1 MGP_C57BL6NJ_G0017761.1 mouse_genomes_project 10 78692229 78699828 - MGP_C57BL6NJ_P0026228 Gstt4 protein_coding protein_coding MGP_C57BL6NJ_T0026229.1 MGP_C57BL6NJ_G0017761.1 mouse_genomes_project 10 78692230 78699812 - MGP_C57BL6NJ_P0026229 Gstt4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024962.1 MGP_C57BL6NJ_G0017394.1 mouse_genomes_project 10 4993985 5009286 + MGP_C57BL6NJ_P0024962 Nup43 protein_coding protein_coding MGP_C57BL6NJ_T0024963.1 MGP_C57BL6NJ_G0017394.1 mouse_genomes_project 10 4993996 4994774 + Nup43 protein_coding retained_intron MGP_C57BL6NJ_T0024964.1 MGP_C57BL6NJ_G0017394.1 mouse_genomes_project 10 4994022 5006485 + Nup43 protein_coding retained_intron MGP_C57BL6NJ_T0024965.1 MGP_C57BL6NJ_G0017394.1 mouse_genomes_project 10 4997179 5005659 + Nup43 protein_coding retained_intron MGP_C57BL6NJ_T0006251.1 MGP_C57BL6NJ_G0005228.1 mouse_genomes_project 10 39603745 39615419 + 4930547M16Rik lincRNA lincRNA MGP_C57BL6NJ_T0025792.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62532894 62589095 - MGP_C57BL6NJ_P0025792 Sgpl1 protein_coding protein_coding MGP_C57BL6NJ_T0025793.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62532894 62589065 - MGP_C57BL6NJ_P0025793 Sgpl1 protein_coding protein_coding MGP_C57BL6NJ_T0025794.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62532897 62589065 - MGP_C57BL6NJ_P0025794 Sgpl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025795.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62535077 62537378 - Sgpl1 protein_coding retained_intron MGP_C57BL6NJ_T0025796.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62538447 62539730 - Sgpl1 protein_coding retained_intron MGP_C57BL6NJ_T0025797.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62550942 62589124 - MGP_C57BL6NJ_P0025797 Sgpl1 protein_coding protein_coding MGP_C57BL6NJ_T0025798.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62552856 62589097 - MGP_C57BL6NJ_P0025798 Sgpl1 protein_coding protein_coding MGP_C57BL6NJ_T0025799.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62558261 62589073 - Sgpl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025800.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62564136 62588251 - MGP_C57BL6NJ_P0025800 Sgpl1 protein_coding protein_coding MGP_C57BL6NJ_T0025801.1 MGP_C57BL6NJ_G0017670.1 mouse_genomes_project 10 62587247 62589025 - Sgpl1 protein_coding retained_intron MGP_C57BL6NJ_T0100981.1 MGP_C57BL6NJ_G0039027.1 mouse_genomes_project 10 84687767 84687831 + Snord37 snoRNA snoRNA MGP_C57BL6NJ_T0003259.1 MGP_C57BL6NJ_G0003020.1 mouse_genomes_project 10 136744657 136749681 + Gm29585 antisense antisense MGP_C57BL6NJ_T0003260.1 MGP_C57BL6NJ_G0003020.1 mouse_genomes_project 10 136748615 136749702 + Gm29585 antisense antisense MGP_C57BL6NJ_T0003261.1 MGP_C57BL6NJ_G0003020.1 mouse_genomes_project 10 136749372 136778501 + Gm29585 antisense antisense MGP_C57BL6NJ_T0027394.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100150124 100181027 - MGP_C57BL6NJ_P0027394 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027395.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100152429 100159580 - protein_coding retained_intron MGP_C57BL6NJ_T0027396.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100153105 100180652 - protein_coding processed_transcript MGP_C57BL6NJ_T0027397.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100167899 100180912 - protein_coding processed_transcript MGP_C57BL6NJ_T0027398.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100177967 100184179 - MGP_C57BL6NJ_P0027398 protein_coding protein_coding MGP_C57BL6NJ_T0027399.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100177967 100184824 - MGP_C57BL6NJ_P0027399 protein_coding protein_coding MGP_C57BL6NJ_T0027400.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100177967 100183451 - MGP_C57BL6NJ_P0027400 protein_coding protein_coding MGP_C57BL6NJ_T0027401.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100178891 100182794 - protein_coding processed_transcript MGP_C57BL6NJ_T0027402.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100179087 100183250 - MGP_C57BL6NJ_P0027402 protein_coding protein_coding MGP_C57BL6NJ_T0027404.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100180927 100185147 - MGP_C57BL6NJ_P0027404 protein_coding protein_coding MGP_C57BL6NJ_T0027405.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100180955 100183451 - MGP_C57BL6NJ_P0027405 protein_coding protein_coding MGP_C57BL6NJ_T0027406.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100180979 100184179 - MGP_C57BL6NJ_P0027406 protein_coding protein_coding MGP_C57BL6NJ_T0027407.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100181419 100184635 - protein_coding processed_transcript MGP_C57BL6NJ_T0027408.1 MGP_C57BL6NJ_G0018067.1 mouse_genomes_project 10 100183057 100183966 - protein_coding processed_transcript MGP_C57BL6NJ_T0025835.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63416599 63456748 - Col13a1 protein_coding processed_transcript MGP_C57BL6NJ_T0025836.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63416599 63444769 - MGP_C57BL6NJ_P0025836 Col13a1 protein_coding protein_coding MGP_C57BL6NJ_T0025837.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63416599 63564606 - MGP_C57BL6NJ_P0025837 Col13a1 protein_coding protein_coding MGP_C57BL6NJ_T0025838.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63416599 63564571 - MGP_C57BL6NJ_P0025838 Col13a1 protein_coding protein_coding MGP_C57BL6NJ_T0025839.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63416599 63564571 - MGP_C57BL6NJ_P0025839 Col13a1 protein_coding protein_coding MGP_C57BL6NJ_T0025840.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63427087 63563619 - Col13a1 protein_coding retained_intron MGP_C57BL6NJ_T0025841.1 MGP_C57BL6NJ_G0017685.1 mouse_genomes_project 10 63427216 63429881 - Col13a1 protein_coding retained_intron MGP_C57BL6NJ_T0025613.1 MGP_C57BL6NJ_G0017609.1 mouse_genomes_project 10 51989112 51998682 - MGP_C57BL6NJ_P0025613 Rsad2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025614.1 MGP_C57BL6NJ_G0017609.1 mouse_genomes_project 10 51992786 51997109 - Rsad2 protein_coding processed_transcript MGP_C57BL6NJ_T0003182.1 MGP_C57BL6NJ_G0002962.1 mouse_genomes_project 10 45529474 45531414 - Gm15934 antisense antisense MGP_C57BL6NJ_T0003176.1 MGP_C57BL6NJ_G0002956.1 mouse_genomes_project 10 41423379 41426170 + Gm17196 antisense antisense MGP_C57BL6NJ_T0003216.1 MGP_C57BL6NJ_G0002989.1 mouse_genomes_project 10 85003517 85005331 + Gm16105 antisense antisense MGP_C57BL6NJ_T0009761.1 MGP_C57BL6NJ_G0007846.1 mouse_genomes_project 10 9572727 9572824 + Gm22194 miRNA miRNA MGP_C57BL6NJ_T0027730.1 MGP_C57BL6NJ_G0018185.1 mouse_genomes_project 10 130600460 130691895 - MGP_C57BL6NJ_P0027730 Mon2 protein_coding protein_coding MGP_C57BL6NJ_T0027731.1 MGP_C57BL6NJ_G0018185.1 mouse_genomes_project 10 130600460 130691895 - MGP_C57BL6NJ_P0027731 Mon2 protein_coding protein_coding MGP_C57BL6NJ_T0027732.1 MGP_C57BL6NJ_G0018185.1 mouse_genomes_project 10 130600460 130691895 - MGP_C57BL6NJ_P0027732 Mon2 protein_coding protein_coding MGP_C57BL6NJ_T0027981.1 MGP_C57BL6NJ_G0018267.1 mouse_genomes_project 10 136800461 136823573 - MGP_C57BL6NJ_P0027981 Erbb3 protein_coding protein_coding MGP_C57BL6NJ_T0006229.1 MGP_C57BL6NJ_G0005211.1 mouse_genomes_project 10 6293320 6295612 + Gm26674 lincRNA lincRNA MGP_C57BL6NJ_T0027574.1 MGP_C57BL6NJ_G0018136.1 mouse_genomes_project 10 122397585 122411046 + MGP_C57BL6NJ_P0027574 A930009A15Rik protein_coding protein_coding MGP_C57BL6NJ_T0012709.1 MGP_C57BL6NJ_G0010754.1 mouse_genomes_project 10 45216688 45217696 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025903.1 MGP_C57BL6NJ_G0017699.1 mouse_genomes_project 10 64269414 64306811 - MGP_C57BL6NJ_P0025903 Ddx50 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025904.1 MGP_C57BL6NJ_G0017699.1 mouse_genomes_project 10 64269417 64316280 - MGP_C57BL6NJ_P0025904 Ddx50 protein_coding protein_coding MGP_C57BL6NJ_T0003174.1 MGP_C57BL6NJ_G0002955.1 mouse_genomes_project 10 40138710 40140306 - Cdk19os antisense antisense MGP_C57BL6NJ_T0003175.1 MGP_C57BL6NJ_G0002955.1 mouse_genomes_project 10 40139294 40140306 - Cdk19os antisense antisense MGP_C57BL6NJ_T0026479.1 MGP_C57BL6NJ_G0017842.1 mouse_genomes_project 10 82928043 82947969 - MGP_C57BL6NJ_P0026479 Shc2 protein_coding protein_coding MGP_C57BL6NJ_T0026480.1 MGP_C57BL6NJ_G0017842.1 mouse_genomes_project 10 82928172 82932846 - Shc2 protein_coding retained_intron MGP_C57BL6NJ_T0026481.1 MGP_C57BL6NJ_G0017842.1 mouse_genomes_project 10 82930212 82933202 - Shc2 protein_coding retained_intron MGP_C57BL6NJ_T0026477.1 MGP_C57BL6NJ_G0017841.1 mouse_genomes_project 10 82913614 82922423 - MGP_C57BL6NJ_P0026477 C2cd4c protein_coding protein_coding MGP_C57BL6NJ_T0026478.1 MGP_C57BL6NJ_G0017841.1 mouse_genomes_project 10 82913614 82922416 - MGP_C57BL6NJ_P0026478 C2cd4c protein_coding protein_coding MGP_C57BL6NJ_T0009778.1 MGP_C57BL6NJ_G0007863.1 mouse_genomes_project 10 62383897 62384019 + Mir466j miRNA miRNA MGP_C57BL6NJ_T0102714.1 MGP_C57BL6NJ_G0040509.1 mouse_genomes_project 10 81026167 81032235 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026333.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581139 80616555 + MGP_C57BL6NJ_P0026333 Itgb2 protein_coding protein_coding MGP_C57BL6NJ_T0026334.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581234 80598005 + MGP_C57BL6NJ_P0026334 Itgb2 protein_coding protein_coding MGP_C57BL6NJ_T0026335.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581245 80616109 + MGP_C57BL6NJ_P0026335 Itgb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026336.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581257 80599482 + MGP_C57BL6NJ_P0026336 Itgb2 protein_coding protein_coding MGP_C57BL6NJ_T0026337.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581261 80616491 + MGP_C57BL6NJ_P0026337 Itgb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026338.1 MGP_C57BL6NJ_G0017793.1 mouse_genomes_project 10 80581267 80616577 + MGP_C57BL6NJ_P0026338 Itgb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027853.1 MGP_C57BL6NJ_G0018223.1 mouse_genomes_project 10 135734528 135740321 - MGP_C57BL6NJ_P0027853 Nab2 protein_coding protein_coding MGP_C57BL6NJ_T0027854.1 MGP_C57BL6NJ_G0018223.1 mouse_genomes_project 10 135734529 135740243 - MGP_C57BL6NJ_P0027854 Nab2 protein_coding protein_coding MGP_C57BL6NJ_T0027855.1 MGP_C57BL6NJ_G0018223.1 mouse_genomes_project 10 135738535 135739092 - MGP_C57BL6NJ_P0027855 Nab2 protein_coding protein_coding MGP_C57BL6NJ_T0027856.1 MGP_C57BL6NJ_G0018223.1 mouse_genomes_project 10 135738594 135743769 - MGP_C57BL6NJ_P0027856 Nab2 protein_coding protein_coding MGP_C57BL6NJ_T0003227.1 MGP_C57BL6NJ_G0002998.1 mouse_genomes_project 10 90946091 91009789 + Gm16271 antisense antisense MGP_C57BL6NJ_T0026270.1 MGP_C57BL6NJ_G0017777.1 mouse_genomes_project 10 79401630 79412044 + MGP_C57BL6NJ_P0026270 2610028H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0012740.1 MGP_C57BL6NJ_G0010785.1 mouse_genomes_project 10 129728277 129731421 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028074.1 MGP_C57BL6NJ_G0018324.1 mouse_genomes_project 10 138196231 138198835 + MGP_C57BL6NJ_P0028074 Olfr809 protein_coding protein_coding MGP_C57BL6NJ_T0028075.1 MGP_C57BL6NJ_G0018324.1 mouse_genomes_project 10 138198300 138199718 + MGP_C57BL6NJ_P0028075 Olfr809 protein_coding protein_coding MGP_C57BL6NJ_T0006237.1 MGP_C57BL6NJ_G0005217.1 mouse_genomes_project 10 14910482 15083654 - Gm20125 lincRNA lincRNA MGP_C57BL6NJ_T0012677.1 MGP_C57BL6NJ_G0010722.1 mouse_genomes_project 10 804269 804578 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025457.1 MGP_C57BL6NJ_G0017559.1 mouse_genomes_project 10 40004095 40012482 - MGP_C57BL6NJ_P0025457 Gtf3c6 protein_coding protein_coding MGP_C57BL6NJ_T0100992.1 MGP_C57BL6NJ_G0039038.1 mouse_genomes_project 10 114452335 114452469 + Gm23105 snoRNA snoRNA MGP_C57BL6NJ_T0026000.1 MGP_C57BL6NJ_G0017725.1 mouse_genomes_project 10 70690718 70816938 - MGP_C57BL6NJ_P0026000 1700040L02Rik protein_coding protein_coding MGP_C57BL6NJ_T0026001.1 MGP_C57BL6NJ_G0017725.1 mouse_genomes_project 10 70697930 70799023 - MGP_C57BL6NJ_P0026001 1700040L02Rik protein_coding protein_coding MGP_C57BL6NJ_T0026887.1 MGP_C57BL6NJ_G0017946.1 mouse_genomes_project 10 84867319 84872816 - MGP_C57BL6NJ_P0026887 Gipc3 protein_coding protein_coding MGP_C57BL6NJ_T0009825.1 MGP_C57BL6NJ_G0007910.1 mouse_genomes_project 10 130257518 130257619 + Mir8104 miRNA miRNA MGP_C57BL6NJ_T0027700.1 MGP_C57BL6NJ_G0018177.1 mouse_genomes_project 10 129077280 129116197 - MGP_C57BL6NJ_P0027700 Tbk1 protein_coding protein_coding MGP_C57BL6NJ_T0027733.1 MGP_C57BL6NJ_G0018186.1 mouse_genomes_project 10 130730357 130817223 - MGP_C57BL6NJ_P0027733 Usp15 protein_coding protein_coding MGP_C57BL6NJ_T0012701.1 MGP_C57BL6NJ_G0010746.1 mouse_genomes_project 10 39096580 39096959 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100995.1 MGP_C57BL6NJ_G0039041.1 mouse_genomes_project 10 117832228 117832372 + Gm25117 snoRNA snoRNA MGP_C57BL6NJ_T0028026.1 MGP_C57BL6NJ_G0018291.1 mouse_genomes_project 10 137412656 137413595 - MGP_C57BL6NJ_P0028026 Olfr768 protein_coding protein_coding MGP_C57BL6NJ_T0025956.1 MGP_C57BL6NJ_G0017712.1 mouse_genomes_project 10 65169928 65203397 + Dnajc12 protein_coding retained_intron MGP_C57BL6NJ_T0025957.1 MGP_C57BL6NJ_G0017712.1 mouse_genomes_project 10 65170026 65202853 + MGP_C57BL6NJ_P0025957 Dnajc12 protein_coding protein_coding MGP_C57BL6NJ_T0003235.1 MGP_C57BL6NJ_G0003004.1 mouse_genomes_project 10 117069378 117186646 - 1700020G17Rik antisense antisense MGP_C57BL6NJ_T0003236.1 MGP_C57BL6NJ_G0003004.1 mouse_genomes_project 10 117087325 117186676 - 1700020G17Rik antisense antisense MGP_C57BL6NJ_T0003237.1 MGP_C57BL6NJ_G0003004.1 mouse_genomes_project 10 117098954 117186708 - 1700020G17Rik antisense antisense MGP_C57BL6NJ_T0003238.1 MGP_C57BL6NJ_G0003004.1 mouse_genomes_project 10 117124156 117186695 - 1700020G17Rik antisense antisense MGP_C57BL6NJ_T0027949.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136612548 136620840 - MGP_C57BL6NJ_P0027949 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027950.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136612548 136620986 - MGP_C57BL6NJ_P0027950 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027951.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136612627 136620834 - MGP_C57BL6NJ_P0027951 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027952.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136612743 136619955 - Nabp2 protein_coding retained_intron MGP_C57BL6NJ_T0027953.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136613053 136620744 - MGP_C57BL6NJ_P0027953 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027954.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136613063 136621663 - MGP_C57BL6NJ_P0027954 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027955.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136619274 136620292 - MGP_C57BL6NJ_P0027955 Nabp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027956.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136619830 136622604 - MGP_C57BL6NJ_P0027956 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0027957.1 MGP_C57BL6NJ_G0018258.1 mouse_genomes_project 10 136619858 136620848 - MGP_C57BL6NJ_P0027957 Nabp2 protein_coding protein_coding MGP_C57BL6NJ_T0000951.1 MGP_C57BL6NJ_G0000862.1 mouse_genomes_project 10 81838149 81840902 - TEC TEC MGP_C57BL6NJ_T0027172.1 MGP_C57BL6NJ_G0018021.1 mouse_genomes_project 10 92153611 92211132 - MGP_C57BL6NJ_P0027172 Parpbp protein_coding protein_coding MGP_C57BL6NJ_T0027173.1 MGP_C57BL6NJ_G0018021.1 mouse_genomes_project 10 92188638 92211069 - MGP_C57BL6NJ_P0027173 Parpbp protein_coding protein_coding MGP_C57BL6NJ_T0027174.1 MGP_C57BL6NJ_G0018021.1 mouse_genomes_project 10 92188658 92211124 - MGP_C57BL6NJ_P0027174 Parpbp protein_coding protein_coding MGP_C57BL6NJ_T0027175.1 MGP_C57BL6NJ_G0018021.1 mouse_genomes_project 10 92195532 92211069 - MGP_C57BL6NJ_P0027175 Parpbp protein_coding protein_coding MGP_C57BL6NJ_T0009799.1 MGP_C57BL6NJ_G0007884.1 mouse_genomes_project 10 84792715 84792806 + Mir3057 miRNA miRNA MGP_C57BL6NJ_T0025643.1 MGP_C57BL6NJ_G0017623.1 mouse_genomes_project 10 53476980 53918671 + MGP_C57BL6NJ_P0025643 Slc35f1 protein_coding protein_coding MGP_C57BL6NJ_T0026434.1 MGP_C57BL6NJ_G0017821.1 mouse_genomes_project 10 81812299 81822033 + MGP_C57BL6NJ_P0026434 Ilvbl protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000967.1 MGP_C57BL6NJ_G0000877.1 mouse_genomes_project 10 128048042 128051745 - TEC TEC MGP_C57BL6NJ_T0025370.1 MGP_C57BL6NJ_G0017528.1 mouse_genomes_project 10 33177083 33202226 - MGP_C57BL6NJ_P0025370 Zufsp protein_coding protein_coding MGP_C57BL6NJ_T0006280.1 MGP_C57BL6NJ_G0005251.1 mouse_genomes_project 10 88249322 88260485 + 4930463O16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006281.1 MGP_C57BL6NJ_G0005251.1 mouse_genomes_project 10 88249763 88253756 + 4930463O16Rik lincRNA lincRNA MGP_C57BL6NJ_T0028041.1 MGP_C57BL6NJ_G0018301.1 mouse_genomes_project 10 137776436 137777389 + MGP_C57BL6NJ_P0028041 Olfr784 protein_coding protein_coding MGP_C57BL6NJ_T0025220.1 MGP_C57BL6NJ_G0017464.1 mouse_genomes_project 10 20521682 20691372 + MGP_C57BL6NJ_P0025220 H60b protein_coding protein_coding MGP_C57BL6NJ_T0025221.1 MGP_C57BL6NJ_G0017464.1 mouse_genomes_project 10 20664476 20691372 + MGP_C57BL6NJ_P0025221 H60b protein_coding protein_coding MGP_C57BL6NJ_T0098952.1 MGP_C57BL6NJ_G0037016.1 mouse_genomes_project 10 92833023 92833143 - n-R5s79 rRNA rRNA MGP_C57BL6NJ_T0009760.1 MGP_C57BL6NJ_G0007845.1 mouse_genomes_project 10 5188401 5188495 + Mir5104 miRNA miRNA MGP_C57BL6NJ_T0027668.1 MGP_C57BL6NJ_G0018165.1 mouse_genomes_project 10 127392341 127426318 - MGP_C57BL6NJ_P0027668 Helb protein_coding protein_coding MGP_C57BL6NJ_T0027669.1 MGP_C57BL6NJ_G0018165.1 mouse_genomes_project 10 127393441 127402744 - Helb protein_coding retained_intron MGP_C57BL6NJ_T0027670.1 MGP_C57BL6NJ_G0018165.1 mouse_genomes_project 10 127393503 127426196 - MGP_C57BL6NJ_P0027670 Helb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003233.1 MGP_C57BL6NJ_G0003002.1 mouse_genomes_project 10 99242157 99292710 - Tmcc3os antisense antisense MGP_C57BL6NJ_T0026186.1 MGP_C57BL6NJ_G0017751.1 mouse_genomes_project 10 78376816 78396645 + MGP_C57BL6NJ_P0026186 Snrpd3 protein_coding protein_coding MGP_C57BL6NJ_T0026187.1 MGP_C57BL6NJ_G0017751.1 mouse_genomes_project 10 78377279 78379132 + Snrpd3 protein_coding retained_intron MGP_C57BL6NJ_T0011537.1 MGP_C57BL6NJ_G0009622.1 mouse_genomes_project 10 96492540 96492702 - Gm27608 misc_RNA misc_RNA MGP_C57BL6NJ_T0100978.1 MGP_C57BL6NJ_G0039024.1 mouse_genomes_project 10 75108238 75108371 + Gm24984 snoRNA snoRNA MGP_C57BL6NJ_T0026716.1 MGP_C57BL6NJ_G0017896.1 mouse_genomes_project 10 83809604 83813374 - Uqcr11 protein_coding processed_transcript MGP_C57BL6NJ_T0026717.1 MGP_C57BL6NJ_G0017896.1 mouse_genomes_project 10 83809604 83813438 - MGP_C57BL6NJ_P0026717 Uqcr11 protein_coding protein_coding MGP_C57BL6NJ_T0026718.1 MGP_C57BL6NJ_G0017896.1 mouse_genomes_project 10 83809605 83813403 - Uqcr11 protein_coding processed_transcript MGP_C57BL6NJ_T0024877.1 MGP_C57BL6NJ_G0017379.1 mouse_genomes_project 10 1526508 1614386 + MGP_C57BL6NJ_P0024877 Ccdc170 protein_coding protein_coding MGP_C57BL6NJ_T0024878.1 MGP_C57BL6NJ_G0017379.1 mouse_genomes_project 10 1554828 1613266 + MGP_C57BL6NJ_P0024878 Ccdc170 protein_coding protein_coding MGP_C57BL6NJ_T0024879.1 MGP_C57BL6NJ_G0017379.1 mouse_genomes_project 10 1556488 1559258 + MGP_C57BL6NJ_P0024879 Ccdc170 protein_coding protein_coding MGP_C57BL6NJ_T0024880.1 MGP_C57BL6NJ_G0017379.1 mouse_genomes_project 10 1582563 1591270 + Ccdc170 protein_coding processed_transcript MGP_C57BL6NJ_T0025345.1 MGP_C57BL6NJ_G0017516.1 mouse_genomes_project 10 29714715 29853184 - MGP_C57BL6NJ_P0025345 Ncoa7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025346.1 MGP_C57BL6NJ_G0017516.1 mouse_genomes_project 10 29714716 29725373 - MGP_C57BL6NJ_P0025346 Ncoa7 protein_coding protein_coding MGP_C57BL6NJ_T0025347.1 MGP_C57BL6NJ_G0017516.1 mouse_genomes_project 10 29714716 29890048 - MGP_C57BL6NJ_P0025347 Ncoa7 protein_coding protein_coding MGP_C57BL6NJ_T0025756.1 MGP_C57BL6NJ_G0017662.1 mouse_genomes_project 10 61526500 61566962 - MGP_C57BL6NJ_P0025756 Chst3 protein_coding protein_coding MGP_C57BL6NJ_T0025757.1 MGP_C57BL6NJ_G0017662.1 mouse_genomes_project 10 61526502 61533674 - MGP_C57BL6NJ_P0025757 Chst3 protein_coding protein_coding MGP_C57BL6NJ_T0025758.1 MGP_C57BL6NJ_G0017662.1 mouse_genomes_project 10 61530571 61539178 - MGP_C57BL6NJ_P0025758 Chst3 protein_coding protein_coding MGP_C57BL6NJ_T0009812.1 MGP_C57BL6NJ_G0007897.1 mouse_genomes_project 10 99260466 99260529 - Mir7211 miRNA miRNA MGP_C57BL6NJ_T0025664.1 MGP_C57BL6NJ_G0017631.1 mouse_genomes_project 10 57124054 57134660 + MGP_C57BL6NJ_P0025664 Msl3l2 protein_coding protein_coding MGP_C57BL6NJ_T0027486.1 MGP_C57BL6NJ_G0018101.1 mouse_genomes_project 10 111630635 111718434 - MGP_C57BL6NJ_P0027486 Mettl25 protein_coding protein_coding MGP_C57BL6NJ_T0027487.1 MGP_C57BL6NJ_G0018101.1 mouse_genomes_project 10 111630701 111718436 - MGP_C57BL6NJ_P0027487 Mettl25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027488.1 MGP_C57BL6NJ_G0018101.1 mouse_genomes_project 10 111703613 111718427 - MGP_C57BL6NJ_P0027488 Mettl25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027489.1 MGP_C57BL6NJ_G0018101.1 mouse_genomes_project 10 111716245 111718267 - Mettl25 protein_coding processed_transcript MGP_C57BL6NJ_T0025017.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8719668 8759496 + MGP_C57BL6NJ_P0025017 Shprh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025018.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8719671 8794309 + MGP_C57BL6NJ_P0025018 Shprh protein_coding protein_coding MGP_C57BL6NJ_T0025019.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8719714 8724768 + Shprh protein_coding retained_intron MGP_C57BL6NJ_T0025020.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8719765 8781622 + MGP_C57BL6NJ_P0025020 Shprh protein_coding protein_coding MGP_C57BL6NJ_T0025021.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8719765 8781622 + MGP_C57BL6NJ_P0025021 Shprh protein_coding protein_coding MGP_C57BL6NJ_T0025022.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8734417 8740136 + MGP_C57BL6NJ_P0025022 Shprh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025023.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8736529 8791011 + Shprh protein_coding retained_intron MGP_C57BL6NJ_T0025024.1 MGP_C57BL6NJ_G0017410.1 mouse_genomes_project 10 8776382 8781681 + Shprh protein_coding retained_intron MGP_C57BL6NJ_T0025579.1 MGP_C57BL6NJ_G0017596.1 mouse_genomes_project 10 43990721 44022355 - MGP_C57BL6NJ_P0025579 Qrsl1 protein_coding protein_coding MGP_C57BL6NJ_T0025580.1 MGP_C57BL6NJ_G0017596.1 mouse_genomes_project 10 43990955 43993638 - Qrsl1 protein_coding retained_intron MGP_C57BL6NJ_T0025581.1 MGP_C57BL6NJ_G0017596.1 mouse_genomes_project 10 43995587 44022355 - Qrsl1 protein_coding retained_intron MGP_C57BL6NJ_T0025459.1 MGP_C57BL6NJ_G0017561.1 mouse_genomes_project 10 40139510 40283521 + MGP_C57BL6NJ_P0025459 Cdk19 protein_coding protein_coding MGP_C57BL6NJ_T0025460.1 MGP_C57BL6NJ_G0017561.1 mouse_genomes_project 10 40139510 40283521 + MGP_C57BL6NJ_P0025460 Cdk19 protein_coding protein_coding MGP_C57BL6NJ_T0027721.1 MGP_C57BL6NJ_G0018183.1 mouse_genomes_project 10 130006451 130011406 + MGP_C57BL6NJ_P0027721 Avpr1a protein_coding protein_coding MGP_C57BL6NJ_T0028078.1 MGP_C57BL6NJ_G0018327.1 mouse_genomes_project 10 138226697 138227657 - MGP_C57BL6NJ_P0028078 Olfr811 protein_coding protein_coding MGP_C57BL6NJ_T0027550.1 MGP_C57BL6NJ_G0018126.1 mouse_genomes_project 10 119499974 119503542 - MGP_C57BL6NJ_P0027550 Atxn7l3b protein_coding protein_coding MGP_C57BL6NJ_T0027551.1 MGP_C57BL6NJ_G0018126.1 mouse_genomes_project 10 119502335 119503548 - Atxn7l3b protein_coding processed_transcript MGP_C57BL6NJ_T0009839.1 MGP_C57BL6NJ_G0007924.1 mouse_genomes_project 10 136792139 136792258 - miRNA miRNA MGP_C57BL6NJ_T0027412.1 MGP_C57BL6NJ_G0018072.1 mouse_genomes_project 10 100967935 101075702 + MGP_C57BL6NJ_P0027412 Eea1 protein_coding protein_coding MGP_C57BL6NJ_T0025570.1 MGP_C57BL6NJ_G0017591.1 mouse_genomes_project 10 43550820 43592708 + MGP_C57BL6NJ_P0025570 Bend3 protein_coding protein_coding MGP_C57BL6NJ_T0025571.1 MGP_C57BL6NJ_G0017591.1 mouse_genomes_project 10 43550820 43592708 + MGP_C57BL6NJ_P0025571 Bend3 protein_coding protein_coding MGP_C57BL6NJ_T0027159.1 MGP_C57BL6NJ_G0018018.1 mouse_genomes_project 10 91536838 91603824 + MGP_C57BL6NJ_P0027159 Pah protein_coding protein_coding MGP_C57BL6NJ_T0027160.1 MGP_C57BL6NJ_G0018018.1 mouse_genomes_project 10 91536973 91603722 + MGP_C57BL6NJ_P0027160 Pah protein_coding protein_coding MGP_C57BL6NJ_T0027161.1 MGP_C57BL6NJ_G0018018.1 mouse_genomes_project 10 91537070 91603543 + MGP_C57BL6NJ_P0027161 Pah protein_coding protein_coding MGP_C57BL6NJ_T0027162.1 MGP_C57BL6NJ_G0018018.1 mouse_genomes_project 10 91563864 91588899 + MGP_C57BL6NJ_P0027162 Pah protein_coding protein_coding MGP_C57BL6NJ_T0102727.1 MGP_C57BL6NJ_G0040522.1 mouse_genomes_project 10 138459241 138459430 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026487.1 MGP_C57BL6NJ_G0017847.1 mouse_genomes_project 10 83000045 83008884 + MGP_C57BL6NJ_P0026487 Gzmm protein_coding protein_coding MGP_C57BL6NJ_T0026488.1 MGP_C57BL6NJ_G0017847.1 mouse_genomes_project 10 83007380 83008883 + Gzmm protein_coding processed_transcript MGP_C57BL6NJ_T0012739.1 MGP_C57BL6NJ_G0010784.1 mouse_genomes_project 10 128361712 128362499 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024847.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 664705 884348 + Plekhg1 protein_coding retained_intron MGP_C57BL6NJ_T0024848.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 666169 884305 + Plekhg1 protein_coding retained_intron MGP_C57BL6NJ_T0024849.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 801755 915501 + MGP_C57BL6NJ_P0024849 Plekhg1 protein_coding protein_coding MGP_C57BL6NJ_T0024850.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 807637 912746 + MGP_C57BL6NJ_P0024850 Plekhg1 protein_coding protein_coding MGP_C57BL6NJ_T0024851.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 808004 915501 + MGP_C57BL6NJ_P0024851 Plekhg1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0024852.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 844586 860694 + Plekhg1 protein_coding retained_intron MGP_C57BL6NJ_T0024853.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 844590 915495 + MGP_C57BL6NJ_P0024853 Plekhg1 protein_coding protein_coding MGP_C57BL6NJ_T0024854.1 MGP_C57BL6NJ_G0017373.1 mouse_genomes_project 10 906160 911723 + MGP_C57BL6NJ_P0024854 Plekhg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027848.1 MGP_C57BL6NJ_G0018222.1 mouse_genomes_project 10 135714922 135734568 + MGP_C57BL6NJ_P0027848 Stat6 protein_coding protein_coding MGP_C57BL6NJ_T0027849.1 MGP_C57BL6NJ_G0018222.1 mouse_genomes_project 10 135714938 135722717 + MGP_C57BL6NJ_P0027849 Stat6 protein_coding protein_coding MGP_C57BL6NJ_T0027850.1 MGP_C57BL6NJ_G0018222.1 mouse_genomes_project 10 135725015 135726952 + Stat6 protein_coding retained_intron MGP_C57BL6NJ_T0027851.1 MGP_C57BL6NJ_G0018222.1 mouse_genomes_project 10 135730507 135731658 + Stat6 protein_coding retained_intron MGP_C57BL6NJ_T0027852.1 MGP_C57BL6NJ_G0018222.1 mouse_genomes_project 10 135733010 135733798 + Stat6 protein_coding retained_intron MGP_C57BL6NJ_T0006330.1 MGP_C57BL6NJ_G0005281.1 mouse_genomes_project 10 137338319 137342510 - lincRNA lincRNA MGP_C57BL6NJ_T0025529.1 MGP_C57BL6NJ_G0017581.1 mouse_genomes_project 10 42119868 42215428 - MGP_C57BL6NJ_P0025529 Foxo3 protein_coding protein_coding MGP_C57BL6NJ_T0025530.1 MGP_C57BL6NJ_G0017581.1 mouse_genomes_project 10 42123850 42215418 - MGP_C57BL6NJ_P0025530 Foxo3 protein_coding protein_coding MGP_C57BL6NJ_T0025531.1 MGP_C57BL6NJ_G0017581.1 mouse_genomes_project 10 42134332 42215372 - MGP_C57BL6NJ_P0025531 Foxo3 protein_coding protein_coding MGP_C57BL6NJ_T0025532.1 MGP_C57BL6NJ_G0017581.1 mouse_genomes_project 10 42136271 42197047 - MGP_C57BL6NJ_P0025532 Foxo3 protein_coding protein_coding MGP_C57BL6NJ_T0025533.1 MGP_C57BL6NJ_G0017581.1 mouse_genomes_project 10 42186072 42215431 - MGP_C57BL6NJ_P0025533 Foxo3 protein_coding protein_coding MGP_C57BL6NJ_T0025667.1 MGP_C57BL6NJ_G0017634.1 mouse_genomes_project 10 58635460 58662194 + MGP_C57BL6NJ_P0025667 Hsf2 protein_coding protein_coding MGP_C57BL6NJ_T0025647.1 MGP_C57BL6NJ_G0017626.1 mouse_genomes_project 10 54373891 54475518 - MGP_C57BL6NJ_P0025647 Mcm9 protein_coding protein_coding MGP_C57BL6NJ_T0025648.1 MGP_C57BL6NJ_G0017626.1 mouse_genomes_project 10 54374886 54436610 - MGP_C57BL6NJ_P0025648 Mcm9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027603.1 MGP_C57BL6NJ_G0018143.1 mouse_genomes_project 10 123736110 123864260 - MGP_C57BL6NJ_P0027603 Myrfl protein_coding protein_coding MGP_C57BL6NJ_T0009792.1 MGP_C57BL6NJ_G0007877.1 mouse_genomes_project 10 83192770 83192836 + Mir6910 miRNA miRNA MGP_C57BL6NJ_T0026268.1 MGP_C57BL6NJ_G0017776.1 mouse_genomes_project 10 79296099 79393783 - MGP_C57BL6NJ_P0026268 Pcnt protein_coding protein_coding MGP_C57BL6NJ_T0026269.1 MGP_C57BL6NJ_G0017776.1 mouse_genomes_project 10 79296103 79393489 - MGP_C57BL6NJ_P0026269 Pcnt protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027378.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 98965422 99095974 + Tmcc3 protein_coding retained_intron MGP_C57BL6NJ_T0027379.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 98965497 99253126 + MGP_C57BL6NJ_P0027379 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027380.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 98965610 99031440 + Tmcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0027381.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99185414 99265300 + MGP_C57BL6NJ_P0027381 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027382.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99219723 99253252 + MGP_C57BL6NJ_P0027382 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027383.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99225172 99252997 + MGP_C57BL6NJ_P0027383 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027384.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99225192 99263116 + MGP_C57BL6NJ_P0027384 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027385.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99249586 99262447 + MGP_C57BL6NJ_P0027385 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0027386.1 MGP_C57BL6NJ_G0018063.1 mouse_genomes_project 10 99250592 99263131 + MGP_C57BL6NJ_P0027386 Tmcc3 protein_coding protein_coding MGP_C57BL6NJ_T0025611.1 MGP_C57BL6NJ_G0017607.1 mouse_genomes_project 10 51228964 51509190 + MGP_C57BL6NJ_P0025611 Ascc3 protein_coding protein_coding MGP_C57BL6NJ_T0012742.1 MGP_C57BL6NJ_G0010787.1 mouse_genomes_project 10 136031897 136032192 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025196.1 MGP_C57BL6NJ_G0017458.1 mouse_genomes_project 10 19591932 19595985 + MGP_C57BL6NJ_P0025196 protein_coding protein_coding MGP_C57BL6NJ_T0025989.1 MGP_C57BL6NJ_G0017722.1 mouse_genomes_project 10 70107418 70135782 - MGP_C57BL6NJ_P0025989 Zfp365 protein_coding protein_coding MGP_C57BL6NJ_T0025990.1 MGP_C57BL6NJ_G0017722.1 mouse_genomes_project 10 70107483 70124471 - Zfp365 protein_coding processed_transcript MGP_C57BL6NJ_T0025991.1 MGP_C57BL6NJ_G0017722.1 mouse_genomes_project 10 70111268 70122141 - Zfp365 protein_coding processed_transcript MGP_C57BL6NJ_T0025992.1 MGP_C57BL6NJ_G0017722.1 mouse_genomes_project 10 70119827 70135555 - Zfp365 protein_coding retained_intron MGP_C57BL6NJ_T0098795.1 MGP_C57BL6NJ_G0036859.1 mouse_genomes_project 10 44128982 44129530 + pseudogene pseudogene MGP_C57BL6NJ_T0028023.1 MGP_C57BL6NJ_G0018288.1 mouse_genomes_project 10 137285384 137303688 + MGP_C57BL6NJ_P0028023 Olfr763 protein_coding protein_coding MGP_C57BL6NJ_T0099671.1 MGP_C57BL6NJ_G0037717.1 mouse_genomes_project 10 10455875 10455975 - Gm23044 snRNA snRNA MGP_C57BL6NJ_T0006261.1 MGP_C57BL6NJ_G0005238.1 mouse_genomes_project 10 67048343 67049185 - Gm28881 lincRNA lincRNA MGP_C57BL6NJ_T0025375.1 MGP_C57BL6NJ_G0017532.1 mouse_genomes_project 10 33294481 33300011 - MGP_C57BL6NJ_P0025375 Fam26d protein_coding protein_coding MGP_C57BL6NJ_T0006249.1 MGP_C57BL6NJ_G0005226.1 mouse_genomes_project 10 36857515 36899692 + Gm26535 lincRNA lincRNA MGP_C57BL6NJ_T0024949.1 MGP_C57BL6NJ_G0017392.1 mouse_genomes_project 10 4899243 4922722 + MGP_C57BL6NJ_P0024949 Lrp11 protein_coding protein_coding MGP_C57BL6NJ_T0024950.1 MGP_C57BL6NJ_G0017392.1 mouse_genomes_project 10 4899495 4945143 + MGP_C57BL6NJ_P0024950 Lrp11 protein_coding protein_coding MGP_C57BL6NJ_T0024951.1 MGP_C57BL6NJ_G0017392.1 mouse_genomes_project 10 4899570 4943689 + MGP_C57BL6NJ_P0024951 Lrp11 protein_coding protein_coding MGP_C57BL6NJ_T0024952.1 MGP_C57BL6NJ_G0017392.1 mouse_genomes_project 10 4908504 4943419 + MGP_C57BL6NJ_P0024952 Lrp11 protein_coding protein_coding MGP_C57BL6NJ_T0026446.1 MGP_C57BL6NJ_G0017830.1 mouse_genomes_project 10 82136402 82258768 + MGP_C57BL6NJ_P0026446 Olfr1353 protein_coding protein_coding MGP_C57BL6NJ_T0026447.1 MGP_C57BL6NJ_G0017830.1 mouse_genomes_project 10 82136416 82258090 + MGP_C57BL6NJ_P0026447 Olfr1353 protein_coding protein_coding MGP_C57BL6NJ_T0026449.1 MGP_C57BL6NJ_G0017830.1 mouse_genomes_project 10 82257753 82258768 + MGP_C57BL6NJ_P0026449 Olfr1353 protein_coding protein_coding MGP_C57BL6NJ_T0012681.1 MGP_C57BL6NJ_G0010726.1 mouse_genomes_project 10 4920166 4920896 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027877.1 MGP_C57BL6NJ_G0018234.1 mouse_genomes_project 10 135968871 135979541 + MGP_C57BL6NJ_P0027877 BC089597 protein_coding protein_coding MGP_C57BL6NJ_T0006244.1 MGP_C57BL6NJ_G0005221.1 mouse_genomes_project 10 20057027 20060167 + Gm29323 lincRNA lincRNA MGP_C57BL6NJ_T0025161.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18097216 18326352 + MGP_C57BL6NJ_P0025161 Map3k5 protein_coding protein_coding MGP_C57BL6NJ_T0025162.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18097270 18325269 + MGP_C57BL6NJ_P0025162 Map3k5 protein_coding protein_coding MGP_C57BL6NJ_T0025163.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18097999 18280866 + MGP_C57BL6NJ_P0025163 Map3k5 protein_coding protein_coding MGP_C57BL6NJ_T0025164.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18113908 18188701 + MGP_C57BL6NJ_P0025164 Map3k5 protein_coding protein_coding MGP_C57BL6NJ_T0025165.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18280232 18286134 + Map3k5 protein_coding processed_transcript MGP_C57BL6NJ_T0025166.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18307502 18310386 + Map3k5 protein_coding retained_intron MGP_C57BL6NJ_T0025167.1 MGP_C57BL6NJ_G0017449.1 mouse_genomes_project 10 18310385 18322150 + Map3k5 protein_coding retained_intron MGP_C57BL6NJ_T0099706.1 MGP_C57BL6NJ_G0037752.1 mouse_genomes_project 10 88597056 88597153 - Gm24226 snRNA snRNA MGP_C57BL6NJ_T0102725.1 MGP_C57BL6NJ_G0040520.1 mouse_genomes_project 10 138028652 138029067 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100980.1 MGP_C57BL6NJ_G0039026.1 mouse_genomes_project 10 81099669 81099723 - Gm22871 snoRNA snoRNA MGP_C57BL6NJ_T0024895.1 MGP_C57BL6NJ_G0017383.1 mouse_genomes_project 10 2721027 2734087 + MGP_C57BL6NJ_P0024895 Myct1 protein_coding protein_coding MGP_C57BL6NJ_T0025252.1 MGP_C57BL6NJ_G0017483.1 mouse_genomes_project 10 22664763 22665840 + MGP_C57BL6NJ_P0025252 Taar7e protein_coding protein_coding MGP_C57BL6NJ_T0099693.1 MGP_C57BL6NJ_G0037739.1 mouse_genomes_project 10 58292366 58292466 + Gm24285 snRNA snRNA MGP_C57BL6NJ_T0025003.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7876659 8010574 - MGP_C57BL6NJ_P0025003 protein_coding protein_coding MGP_C57BL6NJ_T0025004.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7876665 8010586 - MGP_C57BL6NJ_P0025004 protein_coding protein_coding MGP_C57BL6NJ_T0025005.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7876665 7955796 - MGP_C57BL6NJ_P0025005 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025006.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7876894 8010574 - MGP_C57BL6NJ_P0025006 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025007.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7944758 7968341 - MGP_C57BL6NJ_P0025007 protein_coding protein_coding MGP_C57BL6NJ_T0025008.1 MGP_C57BL6NJ_G0017406.1 mouse_genomes_project 10 7945416 8010586 - MGP_C57BL6NJ_P0025008 protein_coding protein_coding MGP_C57BL6NJ_T0012714.1 MGP_C57BL6NJ_G0010759.1 mouse_genomes_project 10 58940509 58940957 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026416.1 MGP_C57BL6NJ_G0017813.1 mouse_genomes_project 10 81375999 81383701 - MGP_C57BL6NJ_P0026416 D10Jhu81e protein_coding protein_coding MGP_C57BL6NJ_T0025398.1 MGP_C57BL6NJ_G0017543.1 mouse_genomes_project 10 36637373 36642920 - MGP_C57BL6NJ_P0025398 Marcks protein_coding protein_coding MGP_C57BL6NJ_T0011538.1 MGP_C57BL6NJ_G0009623.1 mouse_genomes_project 10 96520888 96521151 - Gm27588 misc_RNA misc_RNA MGP_C57BL6NJ_T0003250.1 MGP_C57BL6NJ_G0003012.1 mouse_genomes_project 10 127101547 127130454 - Grip1os1 antisense antisense MGP_C57BL6NJ_T0003251.1 MGP_C57BL6NJ_G0003012.1 mouse_genomes_project 10 127125238 127130341 - Grip1os1 antisense antisense MGP_C57BL6NJ_T0028065.1 MGP_C57BL6NJ_G0018319.1 mouse_genomes_project 10 138120138 138120741 + MGP_C57BL6NJ_P0028065 protein_coding protein_coding MGP_C57BL6NJ_T0006288.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96487233 96523160 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006289.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96487239 96487907 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006290.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96487327 96523013 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006291.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96492172 96492679 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006292.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96498776 96589812 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006293.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96498776 96589398 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006294.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96500917 96589316 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006295.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96554851 96589809 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006296.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96556557 96557861 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006297.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96556577 96587790 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006298.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96556603 96589613 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006300.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96586722 96586782 - Rmst lincRNA misc_RNA MGP_C57BL6NJ_T0006301.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96586722 96587411 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0006302.1 MGP_C57BL6NJ_G0005258.1 mouse_genomes_project 10 96586765 96589812 - Rmst lincRNA lincRNA MGP_C57BL6NJ_T0025381.1 MGP_C57BL6NJ_G0017538.1 mouse_genomes_project 10 33569507 33573386 + MGP_C57BL6NJ_P0025381 Tspyl4 protein_coding protein_coding MGP_C57BL6NJ_T0025067.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11203404 11205028 + MGP_C57BL6NJ_P0025067 Fuca2 protein_coding protein_coding MGP_C57BL6NJ_T0025068.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11203408 11209852 + MGP_C57BL6NJ_P0025068 Fuca2 protein_coding protein_coding MGP_C57BL6NJ_T0025069.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11204851 11219515 + MGP_C57BL6NJ_P0025069 Fuca2 protein_coding protein_coding MGP_C57BL6NJ_T0025070.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11204851 11223007 + MGP_C57BL6NJ_P0025070 Fuca2 protein_coding protein_coding MGP_C57BL6NJ_T0025071.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11204934 11217070 + Fuca2 protein_coding retained_intron MGP_C57BL6NJ_T0025072.1 MGP_C57BL6NJ_G0017420.1 mouse_genomes_project 10 11210008 11219470 + Fuca2 protein_coding processed_transcript MGP_C57BL6NJ_T0006252.1 MGP_C57BL6NJ_G0005229.1 mouse_genomes_project 10 41484685 41487516 - Gm29095 lincRNA lincRNA MGP_C57BL6NJ_T0100961.1 MGP_C57BL6NJ_G0039007.1 mouse_genomes_project 10 37822450 37822518 + Gm24297 snoRNA snoRNA MGP_C57BL6NJ_T0025427.1 MGP_C57BL6NJ_G0017550.1 mouse_genomes_project 10 39296706 39344840 + MGP_C57BL6NJ_P0025427 Traf3ip2 protein_coding protein_coding MGP_C57BL6NJ_T0025428.1 MGP_C57BL6NJ_G0017550.1 mouse_genomes_project 10 39327879 39334406 + Traf3ip2 protein_coding retained_intron MGP_C57BL6NJ_T0025429.1 MGP_C57BL6NJ_G0017550.1 mouse_genomes_project 10 39334770 39339568 + Traf3ip2 protein_coding processed_transcript MGP_C57BL6NJ_T0025430.1 MGP_C57BL6NJ_G0017550.1 mouse_genomes_project 10 39335361 39344356 + Traf3ip2 protein_coding retained_intron MGP_C57BL6NJ_T0025431.1 MGP_C57BL6NJ_G0017550.1 mouse_genomes_project 10 39339202 39344358 + Traf3ip2 protein_coding retained_intron MGP_C57BL6NJ_T0025470.1 MGP_C57BL6NJ_G0017569.1 mouse_genomes_project 10 41165028 41207940 + MGP_C57BL6NJ_P0025470 Ak9 protein_coding protein_coding MGP_C57BL6NJ_T0025471.1 MGP_C57BL6NJ_G0017569.1 mouse_genomes_project 10 41175523 41298062 + MGP_C57BL6NJ_P0025471 Ak9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025472.1 MGP_C57BL6NJ_G0017569.1 mouse_genomes_project 10 41211369 41299308 + MGP_C57BL6NJ_P0025472 Ak9 protein_coding protein_coding MGP_C57BL6NJ_T0024989.1 MGP_C57BL6NJ_G0017402.1 mouse_genomes_project 10 6119789 6294797 - MGP_C57BL6NJ_P0024989 Sash1 protein_coding protein_coding MGP_C57BL6NJ_T0099317.1 MGP_C57BL6NJ_G0037380.1 mouse_genomes_project 10 99067646 99069488 + Gm16155 sense_intronic sense_intronic MGP_C57BL6NJ_T0099726.1 MGP_C57BL6NJ_G0037772.1 mouse_genomes_project 10 131065071 131065255 + Gm22958 snRNA snRNA MGP_C57BL6NJ_T0026766.1 MGP_C57BL6NJ_G0017910.1 mouse_genomes_project 10 84154124 84193886 - MGP_C57BL6NJ_P0026766 Ap3d1 protein_coding protein_coding MGP_C57BL6NJ_T0028003.1 MGP_C57BL6NJ_G0018279.1 mouse_genomes_project 10 137078536 137082732 - MGP_C57BL6NJ_P0028003 Ormdl2 protein_coding protein_coding MGP_C57BL6NJ_T0025708.1 MGP_C57BL6NJ_G0017647.1 mouse_genomes_project 10 59937617 59942222 - MGP_C57BL6NJ_P0025708 Gm17542 protein_coding protein_coding MGP_C57BL6NJ_T0025368.1 MGP_C57BL6NJ_G0017526.1 mouse_genomes_project 10 33107778 33127656 + MGP_C57BL6NJ_P0025368 Sult3a1 protein_coding protein_coding MGP_C57BL6NJ_T0009827.1 MGP_C57BL6NJ_G0007912.1 mouse_genomes_project 10 130817163 130817259 - Gm27920 miRNA miRNA MGP_C57BL6NJ_T0006277.1 MGP_C57BL6NJ_G0005248.1 mouse_genomes_project 10 84129053 84134392 + Gm26541 lincRNA lincRNA MGP_C57BL6NJ_T0027498.1 MGP_C57BL6NJ_G0018105.1 mouse_genomes_project 10 113257352 113416687 + MGP_C57BL6NJ_P0027498 Lin7a protein_coding protein_coding MGP_C57BL6NJ_T0027499.1 MGP_C57BL6NJ_G0018105.1 mouse_genomes_project 10 113257352 113416687 + MGP_C57BL6NJ_P0027499 Lin7a protein_coding protein_coding MGP_C57BL6NJ_T0026579.1 MGP_C57BL6NJ_G0017870.1 mouse_genomes_project 10 83345835 83353139 + MGP_C57BL6NJ_P0026579 Cnn2 protein_coding protein_coding MGP_C57BL6NJ_T0026580.1 MGP_C57BL6NJ_G0017870.1 mouse_genomes_project 10 83345874 83351761 + MGP_C57BL6NJ_P0026580 Cnn2 protein_coding protein_coding MGP_C57BL6NJ_T0027147.1 MGP_C57BL6NJ_G0018014.1 mouse_genomes_project 10 90734256 90793302 + MGP_C57BL6NJ_P0027147 Nt5dc3 protein_coding protein_coding MGP_C57BL6NJ_T0000968.1 MGP_C57BL6NJ_G0000878.1 mouse_genomes_project 10 128131057 128133534 + TEC TEC MGP_C57BL6NJ_T0009763.1 MGP_C57BL6NJ_G0007848.1 mouse_genomes_project 10 21236603 21236664 - Mir7663 miRNA miRNA MGP_C57BL6NJ_T0025228.1 MGP_C57BL6NJ_G0017467.1 mouse_genomes_project 10 21205286 21206149 - Tbpl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025229.1 MGP_C57BL6NJ_G0017467.1 mouse_genomes_project 10 21205579 21222423 - MGP_C57BL6NJ_P0025229 Tbpl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025230.1 MGP_C57BL6NJ_G0017467.1 mouse_genomes_project 10 21211544 21238593 - Tbpl1 protein_coding retained_intron MGP_C57BL6NJ_T0099709.1 MGP_C57BL6NJ_G0037755.1 mouse_genomes_project 10 92230550 92230665 - Gm26357 snRNA snRNA MGP_C57BL6NJ_T0102712.1 MGP_C57BL6NJ_G0040507.1 mouse_genomes_project 10 22632629 22633162 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009773.1 MGP_C57BL6NJ_G0007858.1 mouse_genomes_project 10 52786360 52786497 + Gm24084 miRNA miRNA MGP_C57BL6NJ_T0025714.1 MGP_C57BL6NJ_G0017649.1 mouse_genomes_project 10 60411572 60471738 - MGP_C57BL6NJ_P0025714 Sept10 protein_coding protein_coding MGP_C57BL6NJ_T0009801.1 MGP_C57BL6NJ_G0007886.1 mouse_genomes_project 10 84949254 84949312 - Mir1191b miRNA miRNA MGP_C57BL6NJ_T0027234.1 MGP_C57BL6NJ_G0018034.1 mouse_genomes_project 10 93607552 93650425 - MGP_C57BL6NJ_P0027234 Gas2l3 protein_coding protein_coding MGP_C57BL6NJ_T0027235.1 MGP_C57BL6NJ_G0018034.1 mouse_genomes_project 10 93607552 93650425 - MGP_C57BL6NJ_P0027235 Gas2l3 protein_coding protein_coding MGP_C57BL6NJ_T0025510.1 MGP_C57BL6NJ_G0017577.1 mouse_genomes_project 10 41533584 41586757 - MGP_C57BL6NJ_P0025510 protein_coding protein_coding MGP_C57BL6NJ_T0026759.1 MGP_C57BL6NJ_G0017907.1 mouse_genomes_project 10 84109672 84123358 - MGP_C57BL6NJ_P0026759 Mknk2 protein_coding protein_coding MGP_C57BL6NJ_T0026760.1 MGP_C57BL6NJ_G0017907.1 mouse_genomes_project 10 84114277 84119511 - MGP_C57BL6NJ_P0026760 Mknk2 protein_coding protein_coding MGP_C57BL6NJ_T0026761.1 MGP_C57BL6NJ_G0017907.1 mouse_genomes_project 10 84118829 84119471 - MGP_C57BL6NJ_P0026761 Mknk2 protein_coding protein_coding MGP_C57BL6NJ_T0026762.1 MGP_C57BL6NJ_G0017907.1 mouse_genomes_project 10 84119165 84125332 - MGP_C57BL6NJ_P0026762 Mknk2 protein_coding protein_coding MGP_C57BL6NJ_T0025689.1 MGP_C57BL6NJ_G0017640.1 mouse_genomes_project 10 59418014 59418566 - MGP_C57BL6NJ_P0025689 protein_coding protein_coding MGP_C57BL6NJ_T0026247.1 MGP_C57BL6NJ_G0017769.1 mouse_genomes_project 10 78849144 78908652 + MGP_C57BL6NJ_P0026247 Gm5134 protein_coding protein_coding MGP_C57BL6NJ_T0026248.1 MGP_C57BL6NJ_G0017769.1 mouse_genomes_project 10 78872811 78897411 + Gm5134 protein_coding retained_intron MGP_C57BL6NJ_T0025509.1 MGP_C57BL6NJ_G0017576.1 mouse_genomes_project 10 41497860 41527226 - MGP_C57BL6NJ_P0025509 protein_coding protein_coding MGP_C57BL6NJ_T0025949.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65092511 65163403 - MGP_C57BL6NJ_P0025949 Sirt1 protein_coding protein_coding MGP_C57BL6NJ_T0025950.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65092513 65112539 - MGP_C57BL6NJ_P0025950 Sirt1 protein_coding protein_coding MGP_C57BL6NJ_T0025951.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65092513 65112539 - MGP_C57BL6NJ_P0025951 Sirt1 protein_coding protein_coding MGP_C57BL6NJ_T0025952.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65092513 65110499 - MGP_C57BL6NJ_P0025952 Sirt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025953.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65092564 65112542 - MGP_C57BL6NJ_P0025953 Sirt1 protein_coding protein_coding MGP_C57BL6NJ_T0025954.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65095653 65099149 - Sirt1 protein_coding retained_intron MGP_C57BL6NJ_T0025955.1 MGP_C57BL6NJ_G0017711.1 mouse_genomes_project 10 65104912 65110499 - Sirt1 protein_coding retained_intron MGP_C57BL6NJ_T0009765.1 MGP_C57BL6NJ_G0007850.1 mouse_genomes_project 10 23773555 23773640 + Gm22566 miRNA miRNA MGP_C57BL6NJ_T0027425.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104392934 104491843 + MGP_C57BL6NJ_P0027425 Poc1b protein_coding protein_coding MGP_C57BL6NJ_T0027426.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104392980 104490907 + MGP_C57BL6NJ_P0027426 Poc1b protein_coding protein_coding MGP_C57BL6NJ_T0027427.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104393001 104491929 + MGP_C57BL6NJ_P0027427 Poc1b protein_coding protein_coding MGP_C57BL6NJ_T0027430.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104416425 104486611 + MGP_C57BL6NJ_P0027430 Poc1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027431.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104459836 104490883 + Poc1b protein_coding processed_transcript MGP_C57BL6NJ_T0027432.1 MGP_C57BL6NJ_G0018082.1 mouse_genomes_project 10 104486713 104490705 + Poc1b protein_coding processed_transcript MGP_C57BL6NJ_T0026272.1 MGP_C57BL6NJ_G0017779.1 mouse_genomes_project 10 79423098 79473582 + MGP_C57BL6NJ_P0026272 Mcm3ap protein_coding protein_coding MGP_C57BL6NJ_T0028047.1 MGP_C57BL6NJ_G0018306.1 mouse_genomes_project 10 137876467 137877406 + MGP_C57BL6NJ_P0028047 Olfr789 protein_coding protein_coding MGP_C57BL6NJ_T0025361.1 MGP_C57BL6NJ_G0017523.1 mouse_genomes_project 10 32320107 32729902 + MGP_C57BL6NJ_P0025361 Trdn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025362.1 MGP_C57BL6NJ_G0017523.1 mouse_genomes_project 10 32320539 32732093 + MGP_C57BL6NJ_P0025362 Trdn protein_coding protein_coding MGP_C57BL6NJ_T0006257.1 MGP_C57BL6NJ_G0005234.1 mouse_genomes_project 10 62456074 62462851 + Gm20611 lincRNA lincRNA MGP_C57BL6NJ_T0026930.1 MGP_C57BL6NJ_G0017954.1 mouse_genomes_project 10 85001584 85026596 - MGP_C57BL6NJ_P0026930 Celf5 protein_coding protein_coding MGP_C57BL6NJ_T0026931.1 MGP_C57BL6NJ_G0017954.1 mouse_genomes_project 10 85009373 85013215 - Celf5 protein_coding retained_intron MGP_C57BL6NJ_T0026932.1 MGP_C57BL6NJ_G0017954.1 mouse_genomes_project 10 85009865 85015786 - Celf5 protein_coding retained_intron MGP_C57BL6NJ_T0026933.1 MGP_C57BL6NJ_G0017954.1 mouse_genomes_project 10 85010117 85026663 - Celf5 protein_coding retained_intron MGP_C57BL6NJ_T0026934.1 MGP_C57BL6NJ_G0017954.1 mouse_genomes_project 10 85011803 85015410 - MGP_C57BL6NJ_P0026934 Celf5 protein_coding protein_coding MGP_C57BL6NJ_T0009819.1 MGP_C57BL6NJ_G0007904.1 mouse_genomes_project 10 114522797 114522891 + Gm25591 miRNA miRNA MGP_C57BL6NJ_T0009788.1 MGP_C57BL6NJ_G0007873.1 mouse_genomes_project 10 81666353 81666457 + Mir6410 miRNA miRNA MGP_C57BL6NJ_T0009787.1 MGP_C57BL6NJ_G0007872.1 mouse_genomes_project 10 81636491 81636562 - Mir6907 miRNA miRNA MGP_C57BL6NJ_T0026660.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83634311 83641986 + MGP_C57BL6NJ_P0026660 Ndufs7 protein_coding protein_coding MGP_C57BL6NJ_T0026661.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83634639 83638604 + Ndufs7 protein_coding retained_intron MGP_C57BL6NJ_T0026662.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83634642 83641985 + MGP_C57BL6NJ_P0026662 Ndufs7 protein_coding protein_coding MGP_C57BL6NJ_T0026663.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83634650 83639134 + Ndufs7 protein_coding retained_intron MGP_C57BL6NJ_T0026664.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83634675 83641987 + Ndufs7 protein_coding processed_transcript MGP_C57BL6NJ_T0026665.1 MGP_C57BL6NJ_G0017884.1 mouse_genomes_project 10 83638505 83640333 + Ndufs7 protein_coding retained_intron MGP_C57BL6NJ_T0025195.1 MGP_C57BL6NJ_G0017457.1 mouse_genomes_project 10 19578664 19658785 + MGP_C57BL6NJ_P0025195 Hbs1l protein_coding protein_coding MGP_C57BL6NJ_T0025197.1 MGP_C57BL6NJ_G0017457.1 mouse_genomes_project 10 19592011 19658788 + MGP_C57BL6NJ_P0025197 Hbs1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027701.1 MGP_C57BL6NJ_G0018178.1 mouse_genomes_project 10 129116782 129159480 - MGP_C57BL6NJ_P0027701 Xpot protein_coding protein_coding MGP_C57BL6NJ_T0027702.1 MGP_C57BL6NJ_G0018178.1 mouse_genomes_project 10 129120392 129159555 - MGP_C57BL6NJ_P0027702 Xpot protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011532.1 MGP_C57BL6NJ_G0009617.1 mouse_genomes_project 10 72983865 72984177 - Gm22320 misc_RNA misc_RNA MGP_C57BL6NJ_T0003157.1 MGP_C57BL6NJ_G0002943.1 mouse_genomes_project 10 8788993 8789693 - Gm16577 antisense antisense MGP_C57BL6NJ_T0006271.1 MGP_C57BL6NJ_G0005244.1 mouse_genomes_project 10 75849686 75980505 - Gm15398 lincRNA lincRNA MGP_C57BL6NJ_T0006228.1 MGP_C57BL6NJ_G0005210.1 mouse_genomes_project 10 1414508 1419563 + Gm21781 lincRNA lincRNA MGP_C57BL6NJ_T0003208.1 MGP_C57BL6NJ_G0002984.1 mouse_genomes_project 10 84223575 84225699 - Gm17151 antisense antisense MGP_C57BL6NJ_T0011526.1 MGP_C57BL6NJ_G0009611.1 mouse_genomes_project 10 24027684 24027937 - Gm26167 misc_RNA misc_RNA MGP_C57BL6NJ_T0011542.1 MGP_C57BL6NJ_G0009627.1 mouse_genomes_project 10 96557268 96557377 - Gm27419 misc_RNA misc_RNA MGP_C57BL6NJ_T0006253.1 MGP_C57BL6NJ_G0005230.1 mouse_genomes_project 10 42757125 42759165 - Gm26860 lincRNA lincRNA MGP_C57BL6NJ_T0009804.1 MGP_C57BL6NJ_G0007889.1 mouse_genomes_project 10 89164299 89164403 + Gm25281 miRNA miRNA MGP_C57BL6NJ_T0009833.1 MGP_C57BL6NJ_G0007918.1 mouse_genomes_project 10 136587823 136587892 - Gm26308 miRNA miRNA MGP_C57BL6NJ_T0026483.1 MGP_C57BL6NJ_G0017844.1 mouse_genomes_project 10 82973892 82977855 + MGP_C57BL6NJ_P0026483 Madcam1 protein_coding protein_coding MGP_C57BL6NJ_T0026792.1 MGP_C57BL6NJ_G0017918.1 mouse_genomes_project 10 84310969 84315705 - MGP_C57BL6NJ_P0026792 Lsm7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026793.1 MGP_C57BL6NJ_G0017918.1 mouse_genomes_project 10 84313324 84315705 - MGP_C57BL6NJ_P0026793 Lsm7 protein_coding protein_coding MGP_C57BL6NJ_T0025593.1 MGP_C57BL6NJ_G0017603.1 mouse_genomes_project 10 45581693 45620661 + MGP_C57BL6NJ_P0025593 Bves protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025340.1 MGP_C57BL6NJ_G0017513.1 mouse_genomes_project 10 29242896 29247418 - MGP_C57BL6NJ_P0025340 Cenpw protein_coding protein_coding MGP_C57BL6NJ_T0028036.1 MGP_C57BL6NJ_G0018298.1 mouse_genomes_project 10 137628184 137630349 - MGP_C57BL6NJ_P0028036 Olfr777 protein_coding protein_coding MGP_C57BL6NJ_T0028037.1 MGP_C57BL6NJ_G0018298.1 mouse_genomes_project 10 137628184 137629120 - MGP_C57BL6NJ_P0028037 Olfr777 protein_coding protein_coding MGP_C57BL6NJ_T0027081.1 MGP_C57BL6NJ_G0017990.1 mouse_genomes_project 10 88127164 88199158 - MGP_C57BL6NJ_P0027081 Nuak1 protein_coding protein_coding MGP_C57BL6NJ_T0027082.1 MGP_C57BL6NJ_G0017990.1 mouse_genomes_project 10 88131555 88148711 - MGP_C57BL6NJ_P0027082 Nuak1 protein_coding protein_coding MGP_C57BL6NJ_T0026068.1 MGP_C57BL6NJ_G0017731.1 mouse_genomes_project 10 72536618 72647525 + MGP_C57BL6NJ_P0026068 Ccdc6 protein_coding protein_coding MGP_C57BL6NJ_T0026069.1 MGP_C57BL6NJ_G0017731.1 mouse_genomes_project 10 72627689 72636530 + Ccdc6 protein_coding retained_intron MGP_C57BL6NJ_T0026070.1 MGP_C57BL6NJ_G0017731.1 mouse_genomes_project 10 72628191 72642497 + MGP_C57BL6NJ_P0026070 Ccdc6 protein_coding protein_coding MGP_C57BL6NJ_T0026071.1 MGP_C57BL6NJ_G0017731.1 mouse_genomes_project 10 72628227 72642511 + MGP_C57BL6NJ_P0026071 Ccdc6 protein_coding protein_coding MGP_C57BL6NJ_T0027507.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 114597693 115137253 - MGP_C57BL6NJ_P0027507 Syt1 protein_coding protein_coding MGP_C57BL6NJ_T0027508.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 114597695 115137260 - MGP_C57BL6NJ_P0027508 Syt1 protein_coding protein_coding MGP_C57BL6NJ_T0027509.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 114731207 114740013 - Syt1 protein_coding retained_intron MGP_C57BL6NJ_T0027510.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 114731263 115135385 - MGP_C57BL6NJ_P0027510 Syt1 protein_coding protein_coding MGP_C57BL6NJ_T0027511.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 115015681 115137240 - Syt1 protein_coding retained_intron MGP_C57BL6NJ_T0027512.1 MGP_C57BL6NJ_G0018112.1 mouse_genomes_project 10 115015898 115135374 - Syt1 protein_coding retained_intron MGP_C57BL6NJ_T0027940.1 MGP_C57BL6NJ_G0018253.1 mouse_genomes_project 10 136525541 136531667 + MGP_C57BL6NJ_P0027940 Cnpy2 protein_coding protein_coding MGP_C57BL6NJ_T0026356.1 MGP_C57BL6NJ_G0017796.1 mouse_genomes_project 10 80677067 80701111 + MGP_C57BL6NJ_P0026356 Ube2g2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026357.1 MGP_C57BL6NJ_G0017796.1 mouse_genomes_project 10 80677118 80702550 + MGP_C57BL6NJ_P0026357 Ube2g2 protein_coding protein_coding MGP_C57BL6NJ_T0026358.1 MGP_C57BL6NJ_G0017796.1 mouse_genomes_project 10 80677122 80698052 + MGP_C57BL6NJ_P0026358 Ube2g2 protein_coding protein_coding MGP_C57BL6NJ_T0026359.1 MGP_C57BL6NJ_G0017796.1 mouse_genomes_project 10 80697737 80701060 + Ube2g2 protein_coding retained_intron MGP_C57BL6NJ_T0099704.1 MGP_C57BL6NJ_G0037750.1 mouse_genomes_project 10 86862755 86862858 - Gm23122 snRNA snRNA MGP_C57BL6NJ_T0026433.1 MGP_C57BL6NJ_G0017820.1 mouse_genomes_project 10 81720597 81723870 - MGP_C57BL6NJ_P0026433 Gm9978 protein_coding protein_coding MGP_C57BL6NJ_T0099686.1 MGP_C57BL6NJ_G0037732.1 mouse_genomes_project 10 46708775 46708882 + Gm25740 snRNA snRNA MGP_C57BL6NJ_T0025155.1 MGP_C57BL6NJ_G0017446.1 mouse_genomes_project 10 17865701 17922152 + MGP_C57BL6NJ_P0025155 Il20ra protein_coding protein_coding MGP_C57BL6NJ_T0026171.1 MGP_C57BL6NJ_G0017747.1 mouse_genomes_project 10 78026514 78140066 + MGP_C57BL6NJ_P0026171 Specc1l protein_coding protein_coding MGP_C57BL6NJ_T0026172.1 MGP_C57BL6NJ_G0017747.1 mouse_genomes_project 10 78046310 78140066 + MGP_C57BL6NJ_P0026172 Specc1l protein_coding protein_coding MGP_C57BL6NJ_T0027734.1 MGP_C57BL6NJ_G0018187.1 mouse_genomes_project 10 130891484 131405780 + MGP_C57BL6NJ_P0027734 Fam19a2 protein_coding protein_coding MGP_C57BL6NJ_T0026364.1 MGP_C57BL6NJ_G0017801.1 mouse_genomes_project 10 80814882 80815553 + MGP_C57BL6NJ_P0026364 Krtap12-1 protein_coding protein_coding MGP_C57BL6NJ_T0098796.1 MGP_C57BL6NJ_G0036860.1 mouse_genomes_project 10 60037209 60037778 - pseudogene pseudogene MGP_C57BL6NJ_T0028096.1 MGP_C57BL6NJ_G0018342.1 mouse_genomes_project 10 138702371 138703429 - MGP_C57BL6NJ_P0028096 Olfr827 protein_coding protein_coding MGP_C57BL6NJ_T0025641.1 MGP_C57BL6NJ_G0017622.1 mouse_genomes_project 10 53209579 53233503 + MGP_C57BL6NJ_P0025641 Nus1 protein_coding protein_coding MGP_C57BL6NJ_T0025642.1 MGP_C57BL6NJ_G0017622.1 mouse_genomes_project 10 53220953 53225395 + MGP_C57BL6NJ_P0025642 Nus1 protein_coding protein_coding MGP_C57BL6NJ_T0028052.1 MGP_C57BL6NJ_G0018311.1 mouse_genomes_project 10 137968981 137974056 + MGP_C57BL6NJ_P0028052 Olfr794 protein_coding protein_coding MGP_C57BL6NJ_T0028053.1 MGP_C57BL6NJ_G0018311.1 mouse_genomes_project 10 137973093 137974056 + MGP_C57BL6NJ_P0028053 Olfr794 protein_coding protein_coding MGP_C57BL6NJ_T0003226.1 MGP_C57BL6NJ_G0002997.1 mouse_genomes_project 10 90876486 90877739 + Gm16280 antisense antisense MGP_C57BL6NJ_T0100963.1 MGP_C57BL6NJ_G0039009.1 mouse_genomes_project 10 40013283 40013497 + Rnu3a snoRNA snoRNA MGP_C57BL6NJ_T0098799.1 MGP_C57BL6NJ_G0036863.1 mouse_genomes_project 10 72744588 72747216 - pseudogene pseudogene MGP_C57BL6NJ_T0026462.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82839073 82855731 - MGP_C57BL6NJ_P0026462 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026463.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82839073 82855623 - MGP_C57BL6NJ_P0026463 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026464.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82839074 82840781 - MGP_C57BL6NJ_P0026464 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026465.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82839749 82840986 - Mier2 protein_coding retained_intron MGP_C57BL6NJ_T0026466.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82840488 82843591 - Mier2 protein_coding retained_intron MGP_C57BL6NJ_T0026467.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82841287 82843173 - Mier2 protein_coding processed_transcript MGP_C57BL6NJ_T0026468.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82847622 82855646 - MGP_C57BL6NJ_P0026468 Mier2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026469.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82847694 82855416 - MGP_C57BL6NJ_P0026469 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026470.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82847701 82855653 - MGP_C57BL6NJ_P0026470 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026471.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82847726 82849630 - MGP_C57BL6NJ_P0026471 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026472.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82848378 82855609 - MGP_C57BL6NJ_P0026472 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0026473.1 MGP_C57BL6NJ_G0017839.1 mouse_genomes_project 10 82848456 82855137 - MGP_C57BL6NJ_P0026473 Mier2 protein_coding protein_coding MGP_C57BL6NJ_T0006236.1 MGP_C57BL6NJ_G0005216.1 mouse_genomes_project 10 11703678 11744578 - Gm26835 lincRNA lincRNA MGP_C57BL6NJ_T0026365.1 MGP_C57BL6NJ_G0017802.1 mouse_genomes_project 10 80820758 80821121 + MGP_C57BL6NJ_P0026365 Gm10100 protein_coding protein_coding MGP_C57BL6NJ_T0027937.1 MGP_C57BL6NJ_G0018251.1 mouse_genomes_project 10 136494296 136496241 - MGP_C57BL6NJ_P0027937 Il23a protein_coding protein_coding MGP_C57BL6NJ_T0012691.1 MGP_C57BL6NJ_G0010736.1 mouse_genomes_project 10 20681794 20682077 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027370.1 MGP_C57BL6NJ_G0018060.1 mouse_genomes_project 10 98766920 98820466 + MGP_C57BL6NJ_P0027370 Nr2c1 protein_coding protein_coding MGP_C57BL6NJ_T0027371.1 MGP_C57BL6NJ_G0018060.1 mouse_genomes_project 10 98767316 98818936 + MGP_C57BL6NJ_P0027371 Nr2c1 protein_coding protein_coding MGP_C57BL6NJ_T0027372.1 MGP_C57BL6NJ_G0018060.1 mouse_genomes_project 10 98775232 98818606 + MGP_C57BL6NJ_P0027372 Nr2c1 protein_coding protein_coding MGP_C57BL6NJ_T0098803.1 MGP_C57BL6NJ_G0036867.1 mouse_genomes_project 10 123510271 123512506 + pseudogene pseudogene MGP_C57BL6NJ_T0024992.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7241394 7404998 - MGP_C57BL6NJ_P0024992 Stxbp5 protein_coding protein_coding MGP_C57BL6NJ_T0024993.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7245805 7405394 - MGP_C57BL6NJ_P0024993 Stxbp5 protein_coding protein_coding MGP_C57BL6NJ_T0024994.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7245843 7286296 - Stxbp5 protein_coding processed_transcript MGP_C57BL6NJ_T0024995.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7246428 7266174 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0024996.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7246760 7404998 - MGP_C57BL6NJ_P0024996 Stxbp5 protein_coding protein_coding MGP_C57BL6NJ_T0024997.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7252946 7256369 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0024998.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7252949 7254796 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0024999.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7253056 7264155 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0025000.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7255284 7286456 - MGP_C57BL6NJ_P0025000 Stxbp5 protein_coding protein_coding MGP_C57BL6NJ_T0025001.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7255450 7264155 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0025002.1 MGP_C57BL6NJ_G0017405.1 mouse_genomes_project 10 7274881 7286427 - Stxbp5 protein_coding retained_intron MGP_C57BL6NJ_T0028028.1 MGP_C57BL6NJ_G0018293.1 mouse_genomes_project 10 137456016 137463807 - MGP_C57BL6NJ_P0028028 Olfr770 protein_coding protein_coding MGP_C57BL6NJ_T0028029.1 MGP_C57BL6NJ_G0018293.1 mouse_genomes_project 10 137456016 137456952 - MGP_C57BL6NJ_P0028029 Olfr770 protein_coding protein_coding MGP_C57BL6NJ_T0028030.1 MGP_C57BL6NJ_G0018293.1 mouse_genomes_project 10 137456562 137464550 - MGP_C57BL6NJ_P0028030 Olfr770 protein_coding protein_coding MGP_C57BL6NJ_T0028031.1 MGP_C57BL6NJ_G0018293.1 mouse_genomes_project 10 137456629 137464554 - MGP_C57BL6NJ_P0028031 Olfr770 protein_coding protein_coding MGP_C57BL6NJ_T0099694.1 MGP_C57BL6NJ_G0037740.1 mouse_genomes_project 10 59539726 59539833 - Gm23058 snRNA snRNA MGP_C57BL6NJ_T0000944.1 MGP_C57BL6NJ_G0000855.1 mouse_genomes_project 10 17028676 17028966 - TEC TEC MGP_C57BL6NJ_T0100977.1 MGP_C57BL6NJ_G0039023.1 mouse_genomes_project 10 74412021 74412152 + Gm22937 snoRNA snoRNA MGP_C57BL6NJ_T0012731.1 MGP_C57BL6NJ_G0010776.1 mouse_genomes_project 10 101554278 101555187 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027178.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269265 92320462 + MGP_C57BL6NJ_P0027178 Ccdc53 protein_coding protein_coding MGP_C57BL6NJ_T0027179.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269318 92287164 + MGP_C57BL6NJ_P0027179 Ccdc53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027180.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269324 92320310 + MGP_C57BL6NJ_P0027180 Ccdc53 protein_coding protein_coding MGP_C57BL6NJ_T0027181.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269343 92296751 + MGP_C57BL6NJ_P0027181 Ccdc53 protein_coding protein_coding MGP_C57BL6NJ_T0027182.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269356 92286866 + Ccdc53 protein_coding retained_intron MGP_C57BL6NJ_T0027183.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92269435 92296530 + MGP_C57BL6NJ_P0027183 Ccdc53 protein_coding protein_coding MGP_C57BL6NJ_T0027184.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92273935 92307857 + Ccdc53 protein_coding processed_transcript MGP_C57BL6NJ_T0027185.1 MGP_C57BL6NJ_G0018023.1 mouse_genomes_project 10 92308625 92320311 + Ccdc53 protein_coding processed_transcript MGP_C57BL6NJ_T0009828.1 MGP_C57BL6NJ_G0007913.1 mouse_genomes_project 10 133933639 133933712 + Gm22183 miRNA miRNA MGP_C57BL6NJ_T0027830.1 MGP_C57BL6NJ_G0018217.1 mouse_genomes_project 10 135562930 135570068 + MGP_C57BL6NJ_P0027830 Stac3 protein_coding protein_coding MGP_C57BL6NJ_T0027831.1 MGP_C57BL6NJ_G0018217.1 mouse_genomes_project 10 135562938 135564083 + MGP_C57BL6NJ_P0027831 Stac3 protein_coding protein_coding MGP_C57BL6NJ_T0027832.1 MGP_C57BL6NJ_G0018217.1 mouse_genomes_project 10 135562961 135570060 + MGP_C57BL6NJ_P0027832 Stac3 protein_coding protein_coding MGP_C57BL6NJ_T0027833.1 MGP_C57BL6NJ_G0018217.1 mouse_genomes_project 10 135565735 135568733 + Stac3 protein_coding retained_intron MGP_C57BL6NJ_T0027834.1 MGP_C57BL6NJ_G0018217.1 mouse_genomes_project 10 135568469 135569237 + Stac3 protein_coding retained_intron MGP_C57BL6NJ_T0012703.1 MGP_C57BL6NJ_G0010748.1 mouse_genomes_project 10 42269205 42269683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027171.1 MGP_C57BL6NJ_G0018020.1 mouse_genomes_project 10 92153251 92154555 + MGP_C57BL6NJ_P0027171 Pmch protein_coding protein_coding MGP_C57BL6NJ_T0025635.1 MGP_C57BL6NJ_G0017619.1 mouse_genomes_project 10 53124925 53174445 - MGP_C57BL6NJ_P0025635 Gopc protein_coding protein_coding MGP_C57BL6NJ_T0025636.1 MGP_C57BL6NJ_G0017619.1 mouse_genomes_project 10 53124925 53174445 - MGP_C57BL6NJ_P0025636 Gopc protein_coding protein_coding MGP_C57BL6NJ_T0025637.1 MGP_C57BL6NJ_G0017619.1 mouse_genomes_project 10 53127624 53174219 - MGP_C57BL6NJ_P0025637 Gopc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003194.1 MGP_C57BL6NJ_G0002971.1 mouse_genomes_project 10 72743274 72743993 - Gm7097 antisense antisense MGP_C57BL6NJ_T0025334.1 MGP_C57BL6NJ_G0017511.1 mouse_genomes_project 10 28356305 28374566 - MGP_C57BL6NJ_P0025334 Rnf146 protein_coding protein_coding MGP_C57BL6NJ_T0025335.1 MGP_C57BL6NJ_G0017511.1 mouse_genomes_project 10 28358298 28374566 - MGP_C57BL6NJ_P0025335 Rnf146 protein_coding protein_coding MGP_C57BL6NJ_T0025336.1 MGP_C57BL6NJ_G0017511.1 mouse_genomes_project 10 28358303 28374164 - MGP_C57BL6NJ_P0025336 Rnf146 protein_coding protein_coding MGP_C57BL6NJ_T0025337.1 MGP_C57BL6NJ_G0017511.1 mouse_genomes_project 10 28358785 28369841 - MGP_C57BL6NJ_P0025337 Rnf146 protein_coding protein_coding MGP_C57BL6NJ_T0025338.1 MGP_C57BL6NJ_G0017511.1 mouse_genomes_project 10 28359346 28374147 - MGP_C57BL6NJ_P0025338 Rnf146 protein_coding protein_coding MGP_C57BL6NJ_T0025877.1 MGP_C57BL6NJ_G0017692.1 mouse_genomes_project 10 64027135 64068359 - MGP_C57BL6NJ_P0025877 Hkdc1 protein_coding protein_coding MGP_C57BL6NJ_T0025878.1 MGP_C57BL6NJ_G0017692.1 mouse_genomes_project 10 64040425 64045629 - Hkdc1 protein_coding retained_intron MGP_C57BL6NJ_T0025879.1 MGP_C57BL6NJ_G0017692.1 mouse_genomes_project 10 64055735 64057751 - Hkdc1 protein_coding retained_intron MGP_C57BL6NJ_T0025880.1 MGP_C57BL6NJ_G0017692.1 mouse_genomes_project 10 64062258 64068276 - Hkdc1 protein_coding retained_intron MGP_C57BL6NJ_T0026991.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85184380 85194099 + MGP_C57BL6NJ_P0026991 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0026992.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85184419 85185560 + MGP_C57BL6NJ_P0026992 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0026993.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85184475 85203409 + MGP_C57BL6NJ_P0026993 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0026994.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85184546 85185555 + MGP_C57BL6NJ_P0026994 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0026995.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189509 85198822 + MGP_C57BL6NJ_P0026995 Ankrd24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026996.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189513 85203406 + Ankrd24 protein_coding retained_intron MGP_C57BL6NJ_T0026997.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189513 85192220 + MGP_C57BL6NJ_P0026997 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0026998.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189519 85191697 + Ankrd24 protein_coding retained_intron MGP_C57BL6NJ_T0026999.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189519 85195698 + MGP_C57BL6NJ_P0026999 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0027000.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85189527 85196190 + MGP_C57BL6NJ_P0027000 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0027001.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85196730 85198762 + MGP_C57BL6NJ_P0027001 Ankrd24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027002.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85196742 85201766 + Ankrd24 protein_coding retained_intron MGP_C57BL6NJ_T0027003.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85199601 85203273 + MGP_C57BL6NJ_P0027003 Ankrd24 protein_coding protein_coding MGP_C57BL6NJ_T0027004.1 MGP_C57BL6NJ_G0017964.1 mouse_genomes_project 10 85202430 85202960 + Ankrd24 protein_coding retained_intron MGP_C57BL6NJ_T0027094.1 MGP_C57BL6NJ_G0017995.1 mouse_genomes_project 10 88713997 88814244 + MGP_C57BL6NJ_P0027094 Ric8b protein_coding protein_coding MGP_C57BL6NJ_T0027095.1 MGP_C57BL6NJ_G0017995.1 mouse_genomes_project 10 88714037 88814244 + MGP_C57BL6NJ_P0027095 Ric8b protein_coding protein_coding MGP_C57BL6NJ_T0025650.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54478239 54613983 - MGP_C57BL6NJ_P0025650 Fam184a protein_coding protein_coding MGP_C57BL6NJ_T0025651.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54479707 54547999 - MGP_C57BL6NJ_P0025651 Fam184a protein_coding protein_coding MGP_C57BL6NJ_T0025652.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54479710 54503477 - MGP_C57BL6NJ_P0025652 Fam184a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025653.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54479711 54552519 - MGP_C57BL6NJ_P0025653 Fam184a protein_coding protein_coding MGP_C57BL6NJ_T0025654.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54479971 54494842 - MGP_C57BL6NJ_P0025654 Fam184a protein_coding protein_coding MGP_C57BL6NJ_T0025655.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54479975 54484611 - MGP_C57BL6NJ_P0025655 Fam184a protein_coding protein_coding MGP_C57BL6NJ_T0025656.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54484521 54530586 - Fam184a protein_coding processed_transcript MGP_C57BL6NJ_T0025657.1 MGP_C57BL6NJ_G0017628.1 mouse_genomes_project 10 54550172 54614012 - Fam184a protein_coding retained_intron MGP_C57BL6NJ_T0026249.1 MGP_C57BL6NJ_G0017770.1 mouse_genomes_project 10 78938040 78949626 + MGP_C57BL6NJ_P0026249 Zfp280b protein_coding protein_coding MGP_C57BL6NJ_T0027319.1 MGP_C57BL6NJ_G0018047.1 mouse_genomes_project 10 97648532 97737039 + MGP_C57BL6NJ_P0027319 Cdk17 protein_coding protein_coding MGP_C57BL6NJ_T0012724.1 MGP_C57BL6NJ_G0010769.1 mouse_genomes_project 10 78868623 78868897 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025699.1 MGP_C57BL6NJ_G0017642.1 mouse_genomes_project 10 59512377 59621827 + MGP_C57BL6NJ_P0025699 Lims1 protein_coding protein_coding MGP_C57BL6NJ_T0025700.1 MGP_C57BL6NJ_G0017642.1 mouse_genomes_project 10 59588901 59618919 + MGP_C57BL6NJ_P0025700 Lims1 protein_coding protein_coding MGP_C57BL6NJ_T0025701.1 MGP_C57BL6NJ_G0017642.1 mouse_genomes_project 10 59588916 59618714 + MGP_C57BL6NJ_P0025701 Lims1 protein_coding protein_coding MGP_C57BL6NJ_T0025702.1 MGP_C57BL6NJ_G0017642.1 mouse_genomes_project 10 59603634 59605914 + Lims1 protein_coding processed_transcript MGP_C57BL6NJ_T0025703.1 MGP_C57BL6NJ_G0017642.1 mouse_genomes_project 10 59613788 59618800 + Lims1 protein_coding processed_transcript MGP_C57BL6NJ_T0026371.1 MGP_C57BL6NJ_G0017806.1 mouse_genomes_project 10 81080904 81085866 - MGP_C57BL6NJ_P0026371 Lrrc3 protein_coding protein_coding MGP_C57BL6NJ_T0012679.1 MGP_C57BL6NJ_G0010724.1 mouse_genomes_project 10 942655 943099 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028021.1 MGP_C57BL6NJ_G0018286.1 mouse_genomes_project 10 137232647 137235359 - MGP_C57BL6NJ_P0028021 Mettl7b protein_coding protein_coding MGP_C57BL6NJ_T0025561.1 MGP_C57BL6NJ_G0017588.1 mouse_genomes_project 10 43015058 43201885 - MGP_C57BL6NJ_P0025561 Sobp protein_coding protein_coding MGP_C57BL6NJ_T0025562.1 MGP_C57BL6NJ_G0017588.1 mouse_genomes_project 10 43200301 43201876 - MGP_C57BL6NJ_P0025562 Sobp protein_coding protein_coding MGP_C57BL6NJ_T0003214.1 MGP_C57BL6NJ_G0002987.1 mouse_genomes_project 10 84825010 84826227 - Gm16315 antisense antisense MGP_C57BL6NJ_T0026574.1 MGP_C57BL6NJ_G0017869.1 mouse_genomes_project 10 83328191 83332017 - Tmem259 protein_coding retained_intron MGP_C57BL6NJ_T0026575.1 MGP_C57BL6NJ_G0017869.1 mouse_genomes_project 10 83329133 83332184 - Tmem259 protein_coding retained_intron MGP_C57BL6NJ_T0026576.1 MGP_C57BL6NJ_G0017869.1 mouse_genomes_project 10 83330361 83341582 - MGP_C57BL6NJ_P0026576 Tmem259 protein_coding protein_coding MGP_C57BL6NJ_T0026577.1 MGP_C57BL6NJ_G0017869.1 mouse_genomes_project 10 83330601 83339147 - MGP_C57BL6NJ_P0026577 Tmem259 protein_coding protein_coding MGP_C57BL6NJ_T0026578.1 MGP_C57BL6NJ_G0017869.1 mouse_genomes_project 10 83331206 83332020 - Tmem259 protein_coding retained_intron MGP_C57BL6NJ_T0025348.1 MGP_C57BL6NJ_G0017517.1 mouse_genomes_project 10 29918728 29929169 - MGP_C57BL6NJ_P0025348 Hey2 protein_coding protein_coding MGP_C57BL6NJ_T0003207.1 MGP_C57BL6NJ_G0002983.1 mouse_genomes_project 10 83777528 83778790 + Gm15124 antisense antisense MGP_C57BL6NJ_T0027307.1 MGP_C57BL6NJ_G0018045.1 mouse_genomes_project 10 97148330 97186911 - MGP_C57BL6NJ_P0027307 Nedd1 protein_coding protein_coding MGP_C57BL6NJ_T0025521.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41817663 41932747 - MGP_C57BL6NJ_P0025521 protein_coding protein_coding MGP_C57BL6NJ_T0025522.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41817666 41887357 - protein_coding retained_intron MGP_C57BL6NJ_T0025523.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41817673 41932693 - MGP_C57BL6NJ_P0025523 protein_coding protein_coding MGP_C57BL6NJ_T0025524.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41818724 41886735 - protein_coding retained_intron MGP_C57BL6NJ_T0025525.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41819480 41932753 - MGP_C57BL6NJ_P0025525 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025526.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41897226 41903802 - MGP_C57BL6NJ_P0025526 protein_coding protein_coding MGP_C57BL6NJ_T0025527.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41912038 41930581 - MGP_C57BL6NJ_P0025527 protein_coding protein_coding MGP_C57BL6NJ_T0025528.1 MGP_C57BL6NJ_G0017580.1 mouse_genomes_project 10 41912579 41932693 - MGP_C57BL6NJ_P0025528 protein_coding protein_coding MGP_C57BL6NJ_T0027324.1 MGP_C57BL6NJ_G0018049.1 mouse_genomes_project 10 97976554 98010759 + MGP_C57BL6NJ_P0027324 Lta4h protein_coding protein_coding MGP_C57BL6NJ_T0027217.1 MGP_C57BL6NJ_G0018030.1 mouse_genomes_project 10 92856557 92861622 + MGP_C57BL6NJ_P0027217 Arl1 protein_coding protein_coding MGP_C57BL6NJ_T0027218.1 MGP_C57BL6NJ_G0018030.1 mouse_genomes_project 10 92856767 92871388 + MGP_C57BL6NJ_P0027218 Arl1 protein_coding protein_coding MGP_C57BL6NJ_T0027219.1 MGP_C57BL6NJ_G0018030.1 mouse_genomes_project 10 92857577 92867881 + MGP_C57BL6NJ_P0027219 Arl1 protein_coding protein_coding MGP_C57BL6NJ_T0025295.1 MGP_C57BL6NJ_G0017499.1 mouse_genomes_project 10 24872002 24873195 + MGP_C57BL6NJ_P0025295 Gm9767 protein_coding protein_coding MGP_C57BL6NJ_T0025441.1 MGP_C57BL6NJ_G0017553.1 mouse_genomes_project 10 39629033 39635575 - MGP_C57BL6NJ_P0025441 Mfsd4b2 protein_coding protein_coding MGP_C57BL6NJ_T0026913.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84917439 84921364 + MGP_C57BL6NJ_P0026913 Dohh protein_coding protein_coding MGP_C57BL6NJ_T0026914.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84917470 84920463 + MGP_C57BL6NJ_P0026914 Dohh protein_coding protein_coding MGP_C57BL6NJ_T0026915.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84917477 84924572 + MGP_C57BL6NJ_P0026915 Dohh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026916.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84917478 84919113 + Dohh protein_coding retained_intron MGP_C57BL6NJ_T0026917.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84917906 84919006 + MGP_C57BL6NJ_P0026917 Dohh protein_coding protein_coding MGP_C57BL6NJ_T0026918.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84918632 84920693 + MGP_C57BL6NJ_P0026918 Dohh protein_coding protein_coding MGP_C57BL6NJ_T0026919.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84920328 84923870 + MGP_C57BL6NJ_P0026919 Dohh protein_coding protein_coding MGP_C57BL6NJ_T0026920.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84922016 84924279 + Dohh protein_coding processed_transcript MGP_C57BL6NJ_T0026921.1 MGP_C57BL6NJ_G0017951.1 mouse_genomes_project 10 84923340 84924147 + Dohh protein_coding retained_intron MGP_C57BL6NJ_T0012745.1 MGP_C57BL6NJ_G0010790.1 mouse_genomes_project 10 138630052 138639825 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025673.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58786177 58899516 + MGP_C57BL6NJ_P0025673 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025674.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58786247 58901700 + MGP_C57BL6NJ_P0025674 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025675.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58786252 58869928 + Pkib protein_coding retained_intron MGP_C57BL6NJ_T0025676.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58786320 58888738 + MGP_C57BL6NJ_P0025676 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025677.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58795156 58877598 + Pkib protein_coding processed_transcript MGP_C57BL6NJ_T0025678.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58801003 58896958 + MGP_C57BL6NJ_P0025678 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025679.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58801054 58896958 + MGP_C57BL6NJ_P0025679 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025680.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58806074 58897671 + MGP_C57BL6NJ_P0025680 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025681.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58806087 58896959 + MGP_C57BL6NJ_P0025681 Pkib protein_coding protein_coding MGP_C57BL6NJ_T0025682.1 MGP_C57BL6NJ_G0017636.1 mouse_genomes_project 10 58888568 58897029 + Pkib protein_coding processed_transcript MGP_C57BL6NJ_T0028005.1 MGP_C57BL6NJ_G0018281.1 mouse_genomes_project 10 137149769 137159086 - MGP_C57BL6NJ_P0028005 Gdf11 protein_coding protein_coding MGP_C57BL6NJ_T0026162.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842135 77855044 + Rab36 protein_coding retained_intron MGP_C57BL6NJ_T0026163.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842143 77861004 + MGP_C57BL6NJ_P0026163 Rab36 protein_coding protein_coding MGP_C57BL6NJ_T0026164.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842161 77860359 + MGP_C57BL6NJ_P0026164 Rab36 protein_coding protein_coding MGP_C57BL6NJ_T0026165.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842303 77852549 + Rab36 protein_coding retained_intron MGP_C57BL6NJ_T0026166.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842350 77851071 + Rab36 protein_coding retained_intron MGP_C57BL6NJ_T0026167.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842399 77856951 + MGP_C57BL6NJ_P0026167 Rab36 protein_coding protein_coding MGP_C57BL6NJ_T0026168.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77842913 77860317 + MGP_C57BL6NJ_P0026168 Rab36 protein_coding protein_coding MGP_C57BL6NJ_T0026169.1 MGP_C57BL6NJ_G0017745.1 mouse_genomes_project 10 77843300 77856946 + Rab36 protein_coding retained_intron MGP_C57BL6NJ_T0025886.1 MGP_C57BL6NJ_G0017694.1 mouse_genomes_project 10 64095310 64097144 + MGP_C57BL6NJ_P0025886 4930507D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0025909.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64505012 64589847 - MGP_C57BL6NJ_P0025909 Tet1 protein_coding protein_coding MGP_C57BL6NJ_T0025910.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64505019 64609736 - MGP_C57BL6NJ_P0025910 Tet1 protein_coding protein_coding MGP_C57BL6NJ_T0025911.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64513064 64514983 - MGP_C57BL6NJ_P0025911 Tet1 protein_coding protein_coding MGP_C57BL6NJ_T0025912.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64513568 64514984 - MGP_C57BL6NJ_P0025912 Tet1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025913.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64513790 64514982 - MGP_C57BL6NJ_P0025913 Tet1 protein_coding protein_coding MGP_C57BL6NJ_T0025914.1 MGP_C57BL6NJ_G0017702.1 mouse_genomes_project 10 64545872 64573025 - Tet1 protein_coding processed_transcript MGP_C57BL6NJ_T0025154.1 MGP_C57BL6NJ_G0017445.1 mouse_genomes_project 10 17790652 17806451 + MGP_C57BL6NJ_P0025154 protein_coding protein_coding MGP_C57BL6NJ_T0028061.1 MGP_C57BL6NJ_G0018316.1 mouse_genomes_project 10 138095211 138096150 - MGP_C57BL6NJ_P0028061 Olfr802 protein_coding protein_coding MGP_C57BL6NJ_T0028062.1 MGP_C57BL6NJ_G0018316.1 mouse_genomes_project 10 138095211 138099511 - MGP_C57BL6NJ_P0028062 Olfr802 protein_coding protein_coding MGP_C57BL6NJ_T0026546.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83206583 83218414 + Prtn3 protein_coding processed_transcript MGP_C57BL6NJ_T0026547.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83214986 83218547 + MGP_C57BL6NJ_P0026547 Prtn3 protein_coding protein_coding MGP_C57BL6NJ_T0026548.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83216352 83218547 + Prtn3 protein_coding retained_intron MGP_C57BL6NJ_T0026549.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83216376 83217762 + Prtn3 protein_coding retained_intron MGP_C57BL6NJ_T0026550.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83216414 83218217 + MGP_C57BL6NJ_P0026550 Prtn3 protein_coding protein_coding MGP_C57BL6NJ_T0026551.1 MGP_C57BL6NJ_G0017859.1 mouse_genomes_project 10 83217155 83218253 + Prtn3 protein_coding retained_intron MGP_C57BL6NJ_T0025268.1 MGP_C57BL6NJ_G0017492.1 mouse_genomes_project 10 23469704 23539909 - MGP_C57BL6NJ_P0025268 Enpp3 protein_coding protein_coding MGP_C57BL6NJ_T0012727.1 MGP_C57BL6NJ_G0010772.1 mouse_genomes_project 10 85049208 85049502 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028020.1 MGP_C57BL6NJ_G0018285.1 mouse_genomes_project 10 137208139 137232648 + MGP_C57BL6NJ_P0028020 Itga7 protein_coding protein_coding MGP_C57BL6NJ_T0006282.1 MGP_C57BL6NJ_G0005252.1 mouse_genomes_project 10 88311753 88317694 - Platr7 lincRNA lincRNA MGP_C57BL6NJ_T0026489.1 MGP_C57BL6NJ_G0017848.1 mouse_genomes_project 10 83021516 83028912 + MGP_C57BL6NJ_P0026489 Bsg protein_coding protein_coding MGP_C57BL6NJ_T0026490.1 MGP_C57BL6NJ_G0017848.1 mouse_genomes_project 10 83021524 83027745 + Bsg protein_coding processed_transcript MGP_C57BL6NJ_T0026491.1 MGP_C57BL6NJ_G0017848.1 mouse_genomes_project 10 83021534 83028994 + MGP_C57BL6NJ_P0026491 Bsg protein_coding protein_coding MGP_C57BL6NJ_T0026492.1 MGP_C57BL6NJ_G0017848.1 mouse_genomes_project 10 83027121 83028727 + Bsg protein_coding retained_intron MGP_C57BL6NJ_T0025369.1 MGP_C57BL6NJ_G0017527.1 mouse_genomes_project 10 33154315 33163726 + MGP_C57BL6NJ_P0025369 Rsph4a protein_coding protein_coding MGP_C57BL6NJ_T0026907.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84897369 84909664 - MGP_C57BL6NJ_P0026907 Fzr1 protein_coding protein_coding MGP_C57BL6NJ_T0026908.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84898245 84909599 - MGP_C57BL6NJ_P0026908 Fzr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026909.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84898519 84909611 - Fzr1 protein_coding retained_intron MGP_C57BL6NJ_T0026910.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84898656 84902561 - MGP_C57BL6NJ_P0026910 Fzr1 protein_coding protein_coding MGP_C57BL6NJ_T0026911.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84899423 84900689 - Fzr1 protein_coding retained_intron MGP_C57BL6NJ_T0026912.1 MGP_C57BL6NJ_G0017950.1 mouse_genomes_project 10 84906510 84909528 - Fzr1 protein_coding processed_transcript MGP_C57BL6NJ_T0027423.1 MGP_C57BL6NJ_G0018081.1 mouse_genomes_project 10 104196680 104320843 + MGP_C57BL6NJ_P0027423 Atp2b1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027424.1 MGP_C57BL6NJ_G0018081.1 mouse_genomes_project 10 104197130 104320844 + MGP_C57BL6NJ_P0027424 Atp2b1 protein_coding protein_coding MGP_C57BL6NJ_T0027113.1 MGP_C57BL6NJ_G0018003.1 mouse_genomes_project 10 89785396 89810242 - MGP_C57BL6NJ_P0027113 Prdm4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027114.1 MGP_C57BL6NJ_G0018003.1 mouse_genomes_project 10 89785396 89810239 - MGP_C57BL6NJ_P0027114 Prdm4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027115.1 MGP_C57BL6NJ_G0018003.1 mouse_genomes_project 10 89785405 89810351 - MGP_C57BL6NJ_P0027115 Prdm4 protein_coding protein_coding MGP_C57BL6NJ_T0017585.1 MGP_C57BL6NJ_G0015529.1 mouse_genomes_project 10 63124143 63152822 - Gm28447 processed_transcript antisense MGP_C57BL6NJ_T0017586.1 MGP_C57BL6NJ_G0015529.1 mouse_genomes_project 10 63131600 63132577 - Gm28447 processed_transcript retained_intron MGP_C57BL6NJ_T0012689.1 MGP_C57BL6NJ_G0010734.1 mouse_genomes_project 10 20475046 20475989 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098944.1 MGP_C57BL6NJ_G0037008.1 mouse_genomes_project 10 877927 878036 - Gm23023 rRNA rRNA MGP_C57BL6NJ_T0025093.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12440059 12495527 - MGP_C57BL6NJ_P0025093 Vta1 protein_coding protein_coding MGP_C57BL6NJ_T0025094.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12440659 12495467 - MGP_C57BL6NJ_P0025094 Vta1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025095.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12440967 12455282 - Vta1 protein_coding retained_intron MGP_C57BL6NJ_T0025096.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12441092 12495426 - MGP_C57BL6NJ_P0025096 Vta1 protein_coding protein_coding MGP_C57BL6NJ_T0025097.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12441143 12472338 - MGP_C57BL6NJ_P0025097 Vta1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025098.1 MGP_C57BL6NJ_G0017426.1 mouse_genomes_project 10 12473125 12495432 - Vta1 protein_coding processed_transcript MGP_C57BL6NJ_T0099708.1 MGP_C57BL6NJ_G0037754.1 mouse_genomes_project 10 91371735 91371842 - Gm23191 snRNA snRNA MGP_C57BL6NJ_T0024906.1 MGP_C57BL6NJ_G0017388.1 mouse_genomes_project 10 4010476 4031398 - MGP_C57BL6NJ_P0024906 Gm10945 protein_coding protein_coding MGP_C57BL6NJ_T0003223.1 MGP_C57BL6NJ_G0002994.1 mouse_genomes_project 10 90004169 90020453 + 4930486F22Rik antisense antisense MGP_C57BL6NJ_T0026435.1 MGP_C57BL6NJ_G0017822.1 mouse_genomes_project 10 81822049 81829464 - MGP_C57BL6NJ_P0026435 Syde1 protein_coding protein_coding MGP_C57BL6NJ_T0025596.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45839880 45991038 + MGP_C57BL6NJ_P0025596 Hace1 protein_coding protein_coding MGP_C57BL6NJ_T0025597.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45840192 45871569 + MGP_C57BL6NJ_P0025597 Hace1 protein_coding protein_coding MGP_C57BL6NJ_T0025598.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45840331 45871523 + Hace1 protein_coding processed_transcript MGP_C57BL6NJ_T0025599.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45852069 45916181 + Hace1 protein_coding processed_transcript MGP_C57BL6NJ_T0025600.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45946647 45989241 + MGP_C57BL6NJ_P0025600 Hace1 protein_coding protein_coding MGP_C57BL6NJ_T0025601.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45947691 45989241 + MGP_C57BL6NJ_P0025601 Hace1 protein_coding protein_coding MGP_C57BL6NJ_T0025602.1 MGP_C57BL6NJ_G0017605.1 mouse_genomes_project 10 45952250 45990964 + Hace1 protein_coding retained_intron MGP_C57BL6NJ_T0025632.1 MGP_C57BL6NJ_G0017618.1 mouse_genomes_project 10 53007944 53107037 + MGP_C57BL6NJ_P0025632 Dcbld1 protein_coding protein_coding MGP_C57BL6NJ_T0025633.1 MGP_C57BL6NJ_G0017618.1 mouse_genomes_project 10 53007958 53069529 + Dcbld1 protein_coding retained_intron MGP_C57BL6NJ_T0025634.1 MGP_C57BL6NJ_G0017618.1 mouse_genomes_project 10 53007962 53107039 + MGP_C57BL6NJ_P0025634 Dcbld1 protein_coding protein_coding MGP_C57BL6NJ_T0011547.1 MGP_C57BL6NJ_G0009632.1 mouse_genomes_project 10 122051541 122051847 - Gm22794 misc_RNA misc_RNA MGP_C57BL6NJ_T0026764.1 MGP_C57BL6NJ_G0017909.1 mouse_genomes_project 10 84149839 84152529 + MGP_C57BL6NJ_P0026764 Izumo4 protein_coding protein_coding MGP_C57BL6NJ_T0026765.1 MGP_C57BL6NJ_G0017909.1 mouse_genomes_project 10 84149862 84152528 + MGP_C57BL6NJ_P0026765 Izumo4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025658.1 MGP_C57BL6NJ_G0017629.1 mouse_genomes_project 10 54764282 54948782 - MGP_C57BL6NJ_P0025658 Man1a protein_coding protein_coding MGP_C57BL6NJ_T0025659.1 MGP_C57BL6NJ_G0017629.1 mouse_genomes_project 10 54766509 54948695 - MGP_C57BL6NJ_P0025659 Man1a protein_coding protein_coding MGP_C57BL6NJ_T0025660.1 MGP_C57BL6NJ_G0017629.1 mouse_genomes_project 10 54840933 54948695 - Man1a protein_coding retained_intron MGP_C57BL6NJ_T0025661.1 MGP_C57BL6NJ_G0017629.1 mouse_genomes_project 10 54873279 54948722 - MGP_C57BL6NJ_P0025661 Man1a protein_coding protein_coding MGP_C57BL6NJ_T0025662.1 MGP_C57BL6NJ_G0017629.1 mouse_genomes_project 10 54881426 54948723 - Man1a protein_coding retained_intron MGP_C57BL6NJ_T0017562.1 MGP_C57BL6NJ_G0015524.1 mouse_genomes_project 10 18728060 18730898 - 4930403O15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011535.1 MGP_C57BL6NJ_G0009620.1 mouse_genomes_project 10 96487857 96488012 - Gm27544 misc_RNA misc_RNA MGP_C57BL6NJ_T0025543.1 MGP_C57BL6NJ_G0017585.1 mouse_genomes_project 10 42554986 42555896 + Ostm1 protein_coding processed_transcript MGP_C57BL6NJ_T0025544.1 MGP_C57BL6NJ_G0017585.1 mouse_genomes_project 10 42554999 42684181 + MGP_C57BL6NJ_P0025544 Ostm1 protein_coding protein_coding MGP_C57BL6NJ_T0025545.1 MGP_C57BL6NJ_G0017585.1 mouse_genomes_project 10 42555002 42686350 + MGP_C57BL6NJ_P0025545 Ostm1 protein_coding protein_coding MGP_C57BL6NJ_T0025546.1 MGP_C57BL6NJ_G0017585.1 mouse_genomes_project 10 42663368 42688317 + MGP_C57BL6NJ_P0025546 Ostm1 protein_coding protein_coding MGP_C57BL6NJ_T0025547.1 MGP_C57BL6NJ_G0017585.1 mouse_genomes_project 10 42663418 42685849 + Ostm1 protein_coding retained_intron MGP_C57BL6NJ_T0027320.1 MGP_C57BL6NJ_G0018048.1 mouse_genomes_project 10 97744183 97810141 - MGP_C57BL6NJ_P0027320 Elk3 protein_coding protein_coding MGP_C57BL6NJ_T0027321.1 MGP_C57BL6NJ_G0018048.1 mouse_genomes_project 10 97746092 97809778 - MGP_C57BL6NJ_P0027321 Elk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027322.1 MGP_C57BL6NJ_G0018048.1 mouse_genomes_project 10 97746092 97809975 - MGP_C57BL6NJ_P0027322 Elk3 protein_coding protein_coding MGP_C57BL6NJ_T0027323.1 MGP_C57BL6NJ_G0018048.1 mouse_genomes_project 10 97782323 97810141 - Elk3 protein_coding retained_intron MGP_C57BL6NJ_T0026685.1 MGP_C57BL6NJ_G0017889.1 mouse_genomes_project 10 83721802 83724086 - MGP_C57BL6NJ_P0026685 2310011J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0025031.1 MGP_C57BL6NJ_G0017414.1 mouse_genomes_project 10 10614483 10637967 - MGP_C57BL6NJ_P0025031 Stx11 protein_coding protein_coding MGP_C57BL6NJ_T0025032.1 MGP_C57BL6NJ_G0017414.1 mouse_genomes_project 10 10614483 10637967 - MGP_C57BL6NJ_P0025032 Stx11 protein_coding protein_coding MGP_C57BL6NJ_T0026372.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81093593 81153843 - MGP_C57BL6NJ_P0026372 Trpm2 protein_coding protein_coding MGP_C57BL6NJ_T0026373.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81095036 81149870 - Trpm2 protein_coding processed_transcript MGP_C57BL6NJ_T0026374.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81095174 81117655 - Trpm2 protein_coding retained_intron MGP_C57BL6NJ_T0026375.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81095232 81120458 - Trpm2 protein_coding retained_intron MGP_C57BL6NJ_T0026376.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81101929 81106696 - Trpm2 protein_coding retained_intron MGP_C57BL6NJ_T0026377.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81103160 81125464 - Trpm2 protein_coding retained_intron MGP_C57BL6NJ_T0026378.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81145011 81153793 - MGP_C57BL6NJ_P0026378 Trpm2 protein_coding protein_coding MGP_C57BL6NJ_T0026379.1 MGP_C57BL6NJ_G0017807.1 mouse_genomes_project 10 81149457 81154552 - Trpm2 protein_coding processed_transcript MGP_C57BL6NJ_T0100999.1 MGP_C57BL6NJ_G0039045.1 mouse_genomes_project 10 134795616 134795743 - Gm24179 snoRNA snoRNA MGP_C57BL6NJ_T0027132.1 MGP_C57BL6NJ_G0018009.1 mouse_genomes_project 10 90202982 90252212 + MGP_C57BL6NJ_P0027132 Timp3 protein_coding protein_coding MGP_C57BL6NJ_T0027133.1 MGP_C57BL6NJ_G0018009.1 mouse_genomes_project 10 90203164 90209435 + Timp3 protein_coding processed_transcript MGP_C57BL6NJ_T0027134.1 MGP_C57BL6NJ_G0018009.1 mouse_genomes_project 10 90203166 90229551 + Timp3 protein_coding processed_transcript MGP_C57BL6NJ_T0027135.1 MGP_C57BL6NJ_G0018009.1 mouse_genomes_project 10 90205507 90246687 + MGP_C57BL6NJ_P0027135 Timp3 protein_coding protein_coding MGP_C57BL6NJ_T0098948.1 MGP_C57BL6NJ_G0037012.1 mouse_genomes_project 10 41273147 41273252 - Gm27783 rRNA rRNA MGP_C57BL6NJ_T0025247.1 MGP_C57BL6NJ_G0017478.1 mouse_genomes_project 10 22562065 22563079 + MGP_C57BL6NJ_P0025247 Taar5 protein_coding protein_coding MGP_C57BL6NJ_T0027014.1 MGP_C57BL6NJ_G0017972.1 mouse_genomes_project 10 85838310 85854712 - MGP_C57BL6NJ_P0027014 Zfp938 protein_coding protein_coding MGP_C57BL6NJ_T0027015.1 MGP_C57BL6NJ_G0017972.1 mouse_genomes_project 10 85838314 85854719 - MGP_C57BL6NJ_P0027015 Zfp938 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102146.1 MGP_C57BL6NJ_G0040179.1 mouse_genomes_project 10 92855118 92856801 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102147.1 MGP_C57BL6NJ_G0040179.1 mouse_genomes_project 10 92856019 92856416 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0025288.1 MGP_C57BL6NJ_G0017496.1 mouse_genomes_project 10 24113188 24287987 + MGP_C57BL6NJ_P0025288 Epb41l2 protein_coding protein_coding MGP_C57BL6NJ_T0025289.1 MGP_C57BL6NJ_G0017496.1 mouse_genomes_project 10 24169559 24287987 + MGP_C57BL6NJ_P0025289 Epb41l2 protein_coding protein_coding MGP_C57BL6NJ_T0025290.1 MGP_C57BL6NJ_G0017496.1 mouse_genomes_project 10 24194657 24252105 + MGP_C57BL6NJ_P0025290 Epb41l2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025291.1 MGP_C57BL6NJ_G0017496.1 mouse_genomes_project 10 24254016 24287956 + MGP_C57BL6NJ_P0025291 Epb41l2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100943.1 MGP_C57BL6NJ_G0038989.1 mouse_genomes_project 10 7343073 7343204 - Gm25635 snoRNA snoRNA MGP_C57BL6NJ_T0027109.1 MGP_C57BL6NJ_G0018002.1 mouse_genomes_project 10 89764186 89782532 + MGP_C57BL6NJ_P0027109 Pwp1 protein_coding protein_coding MGP_C57BL6NJ_T0027110.1 MGP_C57BL6NJ_G0018002.1 mouse_genomes_project 10 89764239 89778124 + Pwp1 protein_coding retained_intron MGP_C57BL6NJ_T0027111.1 MGP_C57BL6NJ_G0018002.1 mouse_genomes_project 10 89764261 89774454 + MGP_C57BL6NJ_P0027111 Pwp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027112.1 MGP_C57BL6NJ_G0018002.1 mouse_genomes_project 10 89768609 89777923 + Pwp1 protein_coding retained_intron MGP_C57BL6NJ_T0100974.1 MGP_C57BL6NJ_G0039020.1 mouse_genomes_project 10 64642930 64643059 - Gm25862 snoRNA snoRNA MGP_C57BL6NJ_T0027867.1 MGP_C57BL6NJ_G0018227.1 mouse_genomes_project 10 135816462 135826149 + MGP_C57BL6NJ_P0027867 Zbtb39 protein_coding protein_coding MGP_C57BL6NJ_T0027789.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135307867 135309580 - MGP_C57BL6NJ_P0027789 Mbd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027790.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135307867 135314912 - MGP_C57BL6NJ_P0027790 Mbd6 protein_coding protein_coding MGP_C57BL6NJ_T0027791.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135307867 135311812 - MGP_C57BL6NJ_P0027791 Mbd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027792.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135308587 135310270 - MGP_C57BL6NJ_P0027792 Mbd6 protein_coding protein_coding MGP_C57BL6NJ_T0027793.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135308744 135314845 - MGP_C57BL6NJ_P0027793 Mbd6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027794.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135309437 135310283 - MGP_C57BL6NJ_P0027794 Mbd6 protein_coding protein_coding MGP_C57BL6NJ_T0027795.1 MGP_C57BL6NJ_G0018209.1 mouse_genomes_project 10 135312479 135314875 - MGP_C57BL6NJ_P0027795 Mbd6 protein_coding protein_coding MGP_C57BL6NJ_T0012684.1 MGP_C57BL6NJ_G0010729.1 mouse_genomes_project 10 8969148 8969877 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026189.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78422954 78437603 + MGP_C57BL6NJ_P0026189 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026190.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78423005 78437650 + MGP_C57BL6NJ_P0026190 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026191.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78425498 78435675 + MGP_C57BL6NJ_P0026191 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026192.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78425505 78437603 + MGP_C57BL6NJ_P0026192 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026193.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78427643 78440265 + MGP_C57BL6NJ_P0026193 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026194.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78427648 78440713 + MGP_C57BL6NJ_P0026194 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026195.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78429984 78440630 + MGP_C57BL6NJ_P0026195 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026196.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78429991 78437650 + MGP_C57BL6NJ_P0026196 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026197.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78430006 78447534 + MGP_C57BL6NJ_P0026197 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026198.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78430007 78437402 + MGP_C57BL6NJ_P0026198 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026199.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78430012 78437650 + MGP_C57BL6NJ_P0026199 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026200.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78430024 78437317 + MGP_C57BL6NJ_P0026200 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026201.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78432874 78440268 + MGP_C57BL6NJ_P0026201 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026202.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78432879 78440708 + MGP_C57BL6NJ_P0026202 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026203.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78432918 78442781 + Ggt1 protein_coding processed_transcript MGP_C57BL6NJ_T0026204.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78434796 78447516 + MGP_C57BL6NJ_P0026204 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026205.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78435234 78440731 + MGP_C57BL6NJ_P0026205 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026206.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78437423 78446251 + MGP_C57BL6NJ_P0026206 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026207.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78442717 78447492 + MGP_C57BL6NJ_P0026207 Ggt1 protein_coding protein_coding MGP_C57BL6NJ_T0026208.1 MGP_C57BL6NJ_G0017753.1 mouse_genomes_project 10 78446452 78447525 + Ggt1 protein_coding retained_intron MGP_C57BL6NJ_T0027139.1 MGP_C57BL6NJ_G0018011.1 mouse_genomes_project 10 90638208 90651747 - Hsp90b1 protein_coding retained_intron MGP_C57BL6NJ_T0027140.1 MGP_C57BL6NJ_G0018011.1 mouse_genomes_project 10 90638839 90655281 - MGP_C57BL6NJ_P0027140 Hsp90b1 protein_coding protein_coding MGP_C57BL6NJ_T0027141.1 MGP_C57BL6NJ_G0018011.1 mouse_genomes_project 10 90640400 90648217 - MGP_C57BL6NJ_P0027141 Hsp90b1 protein_coding protein_coding MGP_C57BL6NJ_T0027142.1 MGP_C57BL6NJ_G0018011.1 mouse_genomes_project 10 90642020 90643721 - Hsp90b1 protein_coding retained_intron MGP_C57BL6NJ_T0027143.1 MGP_C57BL6NJ_G0018011.1 mouse_genomes_project 10 90651724 90652865 - Hsp90b1 protein_coding retained_intron MGP_C57BL6NJ_T0098951.1 MGP_C57BL6NJ_G0037015.1 mouse_genomes_project 10 81755308 81755424 + Gm25164 rRNA rRNA MGP_C57BL6NJ_T0009794.1 MGP_C57BL6NJ_G0007879.1 mouse_genomes_project 10 83788059 83788142 + Gm22721 miRNA miRNA MGP_C57BL6NJ_T0099712.1 MGP_C57BL6NJ_G0037758.1 mouse_genomes_project 10 95341724 95341827 + Gm25390 snRNA snRNA MGP_C57BL6NJ_T0026417.1 MGP_C57BL6NJ_G0017814.1 mouse_genomes_project 10 81384842 81399076 - MGP_C57BL6NJ_P0026417 Pwp2 protein_coding protein_coding MGP_C57BL6NJ_T0100976.1 MGP_C57BL6NJ_G0039022.1 mouse_genomes_project 10 71485342 71485459 + Gm24172 snoRNA snoRNA MGP_C57BL6NJ_T0025407.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771594 38787993 - MGP_C57BL6NJ_P0025407 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025408.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771598 38787987 - MGP_C57BL6NJ_P0025408 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025409.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771600 38775989 - MGP_C57BL6NJ_P0025409 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025410.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771600 38787935 - MGP_C57BL6NJ_P0025410 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025411.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771608 38787987 - MGP_C57BL6NJ_P0025411 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025412.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771609 38787987 - MGP_C57BL6NJ_P0025412 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025413.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771610 38775201 - MGP_C57BL6NJ_P0025413 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025414.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771614 38788001 - MGP_C57BL6NJ_P0025414 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025415.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38771658 38787987 - MGP_C57BL6NJ_P0025415 Fam229b protein_coding protein_coding MGP_C57BL6NJ_T0025416.1 MGP_C57BL6NJ_G0017546.1 mouse_genomes_project 10 38772409 38787944 - Fam229b protein_coding retained_intron MGP_C57BL6NJ_T0026749.1 MGP_C57BL6NJ_G0017904.1 mouse_genomes_project 10 84038012 84052190 + MGP_C57BL6NJ_P0026749 Scamp4 protein_coding protein_coding MGP_C57BL6NJ_T0026750.1 MGP_C57BL6NJ_G0017904.1 mouse_genomes_project 10 84038383 84051370 + MGP_C57BL6NJ_P0026750 Scamp4 protein_coding protein_coding MGP_C57BL6NJ_T0025215.1 MGP_C57BL6NJ_G0017462.1 mouse_genomes_project 10 20468806 20512856 - MGP_C57BL6NJ_P0025215 E030030I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0025216.1 MGP_C57BL6NJ_G0017462.1 mouse_genomes_project 10 20499865 20512409 - E030030I06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0025217.1 MGP_C57BL6NJ_G0017462.1 mouse_genomes_project 10 20499984 20512856 - MGP_C57BL6NJ_P0025217 E030030I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0025218.1 MGP_C57BL6NJ_G0017462.1 mouse_genomes_project 10 20512074 20512283 - E030030I06Rik protein_coding transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0006227.1 MGP_C57BL6NJ_G0005209.1 mouse_genomes_project 10 258503 261566 - Gm26752 lincRNA lincRNA MGP_C57BL6NJ_T0025450.1 MGP_C57BL6NJ_G0017557.1 mouse_genomes_project 10 39761549 39876747 - MGP_C57BL6NJ_P0025450 Slc16a10 protein_coding protein_coding MGP_C57BL6NJ_T0025895.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64190823 64233088 - MGP_C57BL6NJ_P0025895 Kif1bp protein_coding protein_coding MGP_C57BL6NJ_T0025896.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64191852 64225441 - MGP_C57BL6NJ_P0025896 Kif1bp protein_coding protein_coding MGP_C57BL6NJ_T0025897.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64213564 64233025 - MGP_C57BL6NJ_P0025897 Kif1bp protein_coding protein_coding MGP_C57BL6NJ_T0025898.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64213638 64221217 - MGP_C57BL6NJ_P0025898 Kif1bp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025899.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64214694 64218674 - Kif1bp protein_coding retained_intron MGP_C57BL6NJ_T0025900.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64220966 64225429 - Kif1bp protein_coding retained_intron MGP_C57BL6NJ_T0025901.1 MGP_C57BL6NJ_G0017697.1 mouse_genomes_project 10 64225075 64233042 - Kif1bp protein_coding retained_intron MGP_C57BL6NJ_T0003239.1 MGP_C57BL6NJ_G0003005.1 mouse_genomes_project 10 121495859 121523217 + 4930473D10Rik antisense antisense MGP_C57BL6NJ_T0025339.1 MGP_C57BL6NJ_G0017512.1 mouse_genomes_project 10 28465717 28552545 - MGP_C57BL6NJ_P0025339 Rspo3 protein_coding protein_coding MGP_C57BL6NJ_T0025113.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16101446 16183978 + MGP_C57BL6NJ_P0025113 Reps1 protein_coding protein_coding MGP_C57BL6NJ_T0025114.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16101491 16183992 + MGP_C57BL6NJ_P0025114 Reps1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025115.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16101497 16183990 + MGP_C57BL6NJ_P0025115 Reps1 protein_coding protein_coding MGP_C57BL6NJ_T0025116.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16101525 16184003 + MGP_C57BL6NJ_P0025116 Reps1 protein_coding protein_coding MGP_C57BL6NJ_T0025117.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16145707 16160485 + Reps1 protein_coding retained_intron MGP_C57BL6NJ_T0025118.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16147410 16159646 + MGP_C57BL6NJ_P0025118 Reps1 protein_coding protein_coding MGP_C57BL6NJ_T0025119.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16148770 16173190 + MGP_C57BL6NJ_P0025119 Reps1 protein_coding protein_coding MGP_C57BL6NJ_T0025120.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16169938 16178889 + Reps1 protein_coding retained_intron MGP_C57BL6NJ_T0025121.1 MGP_C57BL6NJ_G0017433.1 mouse_genomes_project 10 16179631 16180557 + Reps1 protein_coding retained_intron MGP_C57BL6NJ_T0102145.1 MGP_C57BL6NJ_G0040178.1 mouse_genomes_project 10 90877204 90880442 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0003191.1 MGP_C57BL6NJ_G0002969.1 mouse_genomes_project 10 65007029 65008115 - 1700120B22Rik antisense antisense MGP_C57BL6NJ_T0009786.1 MGP_C57BL6NJ_G0007871.1 mouse_genomes_project 10 81559800 81559858 - Mir7659 miRNA miRNA MGP_C57BL6NJ_T0006303.1 MGP_C57BL6NJ_G0005260.1 mouse_genomes_project 10 96595942 96804532 - Gm20757 lincRNA lincRNA MGP_C57BL6NJ_T0006326.1 MGP_C57BL6NJ_G0005277.1 mouse_genomes_project 10 136412386 136416369 - lincRNA lincRNA MGP_C57BL6NJ_T0026459.1 MGP_C57BL6NJ_G0017838.1 mouse_genomes_project 10 82825258 82832571 - Plpp2 protein_coding processed_transcript MGP_C57BL6NJ_T0026460.1 MGP_C57BL6NJ_G0017838.1 mouse_genomes_project 10 82825960 82832504 - MGP_C57BL6NJ_P0026460 Plpp2 protein_coding protein_coding MGP_C57BL6NJ_T0026461.1 MGP_C57BL6NJ_G0017838.1 mouse_genomes_project 10 82826315 82832601 - MGP_C57BL6NJ_P0026461 Plpp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102398.1 MGP_C57BL6NJ_G0040325.1 mouse_genomes_project 10 135910586 135940361 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102399.1 MGP_C57BL6NJ_G0040325.1 mouse_genomes_project 10 135910586 135940356 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0027336.1 MGP_C57BL6NJ_G0018054.1 mouse_genomes_project 10 98143709 98159532 + MGP_C57BL6NJ_P0027336 4933408J17Rik protein_coding protein_coding MGP_C57BL6NJ_T0025222.1 MGP_C57BL6NJ_G0017465.1 mouse_genomes_project 10 20772738 20792649 + MGP_C57BL6NJ_P0025222 protein_coding protein_coding MGP_C57BL6NJ_T0025223.1 MGP_C57BL6NJ_G0017465.1 mouse_genomes_project 10 20777714 20792649 + MGP_C57BL6NJ_P0025223 protein_coding protein_coding MGP_C57BL6NJ_T0100985.1 MGP_C57BL6NJ_G0039031.1 mouse_genomes_project 10 100918073 100918206 + Gm24433 snoRNA snoRNA MGP_C57BL6NJ_T0025814.1 MGP_C57BL6NJ_G0017673.1 mouse_genomes_project 10 62786829 62794028 + MGP_C57BL6NJ_P0025814 Prf1 protein_coding protein_coding MGP_C57BL6NJ_T0025843.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63714634 63718030 - MGP_C57BL6NJ_P0025843 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025844.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715189 63717925 - MGP_C57BL6NJ_P0025844 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025845.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715189 63717948 - MGP_C57BL6NJ_P0025845 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025846.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715189 63718030 - MGP_C57BL6NJ_P0025846 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025847.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715191 63717993 - MGP_C57BL6NJ_P0025847 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025848.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715814 63750578 - MGP_C57BL6NJ_P0025848 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025849.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715896 63743102 - MGP_C57BL6NJ_P0025849 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025850.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715897 63754914 - MGP_C57BL6NJ_P0025850 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025851.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63715899 63717476 - MGP_C57BL6NJ_P0025851 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025852.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63716926 63754918 - MGP_C57BL6NJ_P0025852 2010107G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0025854.1 MGP_C57BL6NJ_G0017687.1 mouse_genomes_project 10 63742916 63754928 - 2010107G23Rik protein_coding processed_transcript MGP_C57BL6NJ_T0027607.1 MGP_C57BL6NJ_G0018146.1 mouse_genomes_project 10 123963851 124005168 + MGP_C57BL6NJ_P0027607 Best3 protein_coding protein_coding MGP_C57BL6NJ_T0003218.1 MGP_C57BL6NJ_G0002991.1 mouse_genomes_project 10 85786950 85809598 + Gm15608 antisense antisense MGP_C57BL6NJ_T0003219.1 MGP_C57BL6NJ_G0002991.1 mouse_genomes_project 10 85793666 85809579 + Gm15608 antisense antisense MGP_C57BL6NJ_T0027647.1 MGP_C57BL6NJ_G0018162.1 mouse_genomes_project 10 126034211 126043763 - MGP_C57BL6NJ_P0027647 Dyrk2 protein_coding protein_coding MGP_C57BL6NJ_T0026748.1 MGP_C57BL6NJ_G0017903.1 mouse_genomes_project 10 84038010 84042586 + MGP_C57BL6NJ_P0026748 Adat3 protein_coding protein_coding MGP_C57BL6NJ_T0026751.1 MGP_C57BL6NJ_G0017903.1 mouse_genomes_project 10 84040995 84052190 + MGP_C57BL6NJ_P0026751 Adat3 protein_coding protein_coding MGP_C57BL6NJ_T0026085.1 MGP_C57BL6NJ_G0017735.1 mouse_genomes_project 10 73371813 73429130 + MGP_C57BL6NJ_P0026085 4930533K18Rik protein_coding protein_coding MGP_C57BL6NJ_T0026339.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80632873 80650057 + MGP_C57BL6NJ_P0026339 Pttg1ip protein_coding protein_coding MGP_C57BL6NJ_T0026340.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80632909 80638754 + Pttg1ip protein_coding retained_intron MGP_C57BL6NJ_T0026341.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80632911 80645224 + MGP_C57BL6NJ_P0026341 Pttg1ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026342.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80632956 80648660 + MGP_C57BL6NJ_P0026342 Pttg1ip protein_coding protein_coding MGP_C57BL6NJ_T0026343.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80632975 80644236 + MGP_C57BL6NJ_P0026343 Pttg1ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026344.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80633562 80648594 + MGP_C57BL6NJ_P0026344 Pttg1ip protein_coding protein_coding MGP_C57BL6NJ_T0026345.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80635098 80644324 + MGP_C57BL6NJ_P0026345 Pttg1ip protein_coding protein_coding MGP_C57BL6NJ_T0026346.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80640718 80648557 + Pttg1ip protein_coding retained_intron MGP_C57BL6NJ_T0026347.1 MGP_C57BL6NJ_G0017794.1 mouse_genomes_project 10 80643661 80648455 + Pttg1ip protein_coding retained_intron MGP_C57BL6NJ_T0102709.1 MGP_C57BL6NJ_G0040504.1 mouse_genomes_project 10 20388361 20396672 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0025417.1 MGP_C57BL6NJ_G0017547.1 mouse_genomes_project 10 38788109 38806685 + MGP_C57BL6NJ_P0025417 Tube1 protein_coding protein_coding MGP_C57BL6NJ_T0026455.1 MGP_C57BL6NJ_G0017834.1 mouse_genomes_project 10 82358090 82385250 - MGP_C57BL6NJ_P0026455 2610008E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0011548.1 MGP_C57BL6NJ_G0009633.1 mouse_genomes_project 10 132191429 132191688 + Gm23777 misc_RNA misc_RNA MGP_C57BL6NJ_T0101003.1 MGP_C57BL6NJ_G0039049.1 mouse_genomes_project 10 136555983 136556118 + Gm23182 snoRNA snoRNA MGP_C57BL6NJ_T0100955.1 MGP_C57BL6NJ_G0039001.1 mouse_genomes_project 10 24007003 24007134 - Gm25016 snoRNA snoRNA MGP_C57BL6NJ_T0027057.1 MGP_C57BL6NJ_G0017985.1 mouse_genomes_project 10 87077170 87085647 + MGP_C57BL6NJ_P0027057 D10Wsu102e protein_coding protein_coding MGP_C57BL6NJ_T0025086.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11700287 11901020 + MGP_C57BL6NJ_P0025086 Hivep2 protein_coding protein_coding MGP_C57BL6NJ_T0025087.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11700591 11901805 + MGP_C57BL6NJ_P0025087 Hivep2 protein_coding protein_coding MGP_C57BL6NJ_T0025088.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11700591 11901804 + MGP_C57BL6NJ_P0025088 Hivep2 protein_coding protein_coding MGP_C57BL6NJ_T0025089.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11700858 11877905 + MGP_C57BL6NJ_P0025089 Hivep2 protein_coding protein_coding MGP_C57BL6NJ_T0025090.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11703615 11741999 + Hivep2 protein_coding retained_intron MGP_C57BL6NJ_T0025091.1 MGP_C57BL6NJ_G0017424.1 mouse_genomes_project 10 11703678 11824362 + Hivep2 protein_coding processed_transcript MGP_C57BL6NJ_T0102143.1 MGP_C57BL6NJ_G0040177.1 mouse_genomes_project 10 27839711 27879984 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102144.1 MGP_C57BL6NJ_G0040177.1 mouse_genomes_project 10 27879545 27882058 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0027088.1 MGP_C57BL6NJ_G0017993.1 mouse_genomes_project 10 88394972 88514114 + MGP_C57BL6NJ_P0027088 Polr3b protein_coding protein_coding MGP_C57BL6NJ_T0025122.1 MGP_C57BL6NJ_G0017434.1 mouse_genomes_project 10 16187869 16269718 - MGP_C57BL6NJ_P0025122 Ect2l protein_coding protein_coding MGP_C57BL6NJ_T0025649.1 MGP_C57BL6NJ_G0017627.1 mouse_genomes_project 10 54436681 54448934 + MGP_C57BL6NJ_P0025649 Asf1a protein_coding protein_coding MGP_C57BL6NJ_T0028048.1 MGP_C57BL6NJ_G0018307.1 mouse_genomes_project 10 137894508 137895578 + MGP_C57BL6NJ_P0028048 Olfr790 protein_coding protein_coding MGP_C57BL6NJ_T0027101.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89216926 89483539 + MGP_C57BL6NJ_P0027101 Btbd11 protein_coding protein_coding MGP_C57BL6NJ_T0027102.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89216939 89463828 + MGP_C57BL6NJ_P0027102 Btbd11 protein_coding protein_coding MGP_C57BL6NJ_T0027103.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89421861 89483539 + MGP_C57BL6NJ_P0027103 Btbd11 protein_coding protein_coding MGP_C57BL6NJ_T0027104.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89421871 89429510 + Btbd11 protein_coding processed_transcript MGP_C57BL6NJ_T0027105.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89452788 89464870 + Btbd11 protein_coding retained_intron MGP_C57BL6NJ_T0027106.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89462806 89483536 + Btbd11 protein_coding processed_transcript MGP_C57BL6NJ_T0027107.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89468440 89483539 + Btbd11 protein_coding retained_intron MGP_C57BL6NJ_T0027108.1 MGP_C57BL6NJ_G0018001.1 mouse_genomes_project 10 89477381 89481507 + Btbd11 protein_coding retained_intron MGP_C57BL6NJ_T0100993.1 MGP_C57BL6NJ_G0039039.1 mouse_genomes_project 10 117080810 117080938 + Gm23698 snoRNA snoRNA MGP_C57BL6NJ_T0026520.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184610 83195206 + MGP_C57BL6NJ_P0026520 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026521.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184788 83189896 + Ptbp1 protein_coding retained_intron MGP_C57BL6NJ_T0026522.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184812 83195612 + MGP_C57BL6NJ_P0026522 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026523.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184816 83194607 + Ptbp1 protein_coding retained_intron MGP_C57BL6NJ_T0026524.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184824 83189797 + Ptbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0026525.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184835 83193608 + MGP_C57BL6NJ_P0026525 Ptbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026526.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184848 83189198 + MGP_C57BL6NJ_P0026526 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026527.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184850 83189228 + Ptbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0026528.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184850 83189548 + MGP_C57BL6NJ_P0026528 Ptbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026529.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83184851 83195133 + MGP_C57BL6NJ_P0026529 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026530.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83185221 83189280 + MGP_C57BL6NJ_P0026530 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026531.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83188955 83189571 + MGP_C57BL6NJ_P0026531 Ptbp1 protein_coding protein_coding MGP_C57BL6NJ_T0026532.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83189177 83190309 + Ptbp1 protein_coding retained_intron MGP_C57BL6NJ_T0026533.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83189833 83193237 + MGP_C57BL6NJ_P0026533 Ptbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026535.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83191921 83193234 + Ptbp1 protein_coding retained_intron MGP_C57BL6NJ_T0026536.1 MGP_C57BL6NJ_G0017857.1 mouse_genomes_project 10 83192200 83195206 + Ptbp1 protein_coding retained_intron MGP_C57BL6NJ_T0009818.1 MGP_C57BL6NJ_G0007903.1 mouse_genomes_project 10 113474668 113474797 + Gm44403 miRNA miRNA MGP_C57BL6NJ_T0027393.1 MGP_C57BL6NJ_G0018066.1 mouse_genomes_project 10 99911594 100080522 - MGP_C57BL6NJ_P0027393 Cradd protein_coding protein_coding MGP_C57BL6NJ_T0026982.1 MGP_C57BL6NJ_G0017962.1 mouse_genomes_project 10 85162583 85176546 + BC025920 protein_coding processed_transcript MGP_C57BL6NJ_T0026983.1 MGP_C57BL6NJ_G0017962.1 mouse_genomes_project 10 85162616 85166150 + MGP_C57BL6NJ_P0026983 BC025920 protein_coding protein_coding MGP_C57BL6NJ_T0026984.1 MGP_C57BL6NJ_G0017962.1 mouse_genomes_project 10 85163196 85165859 + MGP_C57BL6NJ_P0026984 BC025920 protein_coding protein_coding MGP_C57BL6NJ_T0026985.1 MGP_C57BL6NJ_G0017962.1 mouse_genomes_project 10 85163196 85165859 + MGP_C57BL6NJ_P0026985 BC025920 protein_coding protein_coding MGP_C57BL6NJ_T0026986.1 MGP_C57BL6NJ_G0017962.1 mouse_genomes_project 10 85163338 85166123 + MGP_C57BL6NJ_P0026986 BC025920 protein_coding protein_coding MGP_C57BL6NJ_T0102710.1 MGP_C57BL6NJ_G0040505.1 mouse_genomes_project 10 20459412 20469135 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026259.1 MGP_C57BL6NJ_G0017774.1 mouse_genomes_project 10 79188298 79195646 + MGP_C57BL6NJ_P0026259 S100b protein_coding protein_coding MGP_C57BL6NJ_T0025157.1 MGP_C57BL6NJ_G0017448.1 mouse_genomes_project 10 18014129 18063946 - MGP_C57BL6NJ_P0025157 Pex7 protein_coding protein_coding MGP_C57BL6NJ_T0025158.1 MGP_C57BL6NJ_G0017448.1 mouse_genomes_project 10 18014297 18063931 - MGP_C57BL6NJ_P0025158 Pex7 protein_coding protein_coding MGP_C57BL6NJ_T0025159.1 MGP_C57BL6NJ_G0017448.1 mouse_genomes_project 10 18014989 18023811 - Pex7 protein_coding retained_intron MGP_C57BL6NJ_T0025160.1 MGP_C57BL6NJ_G0017448.1 mouse_genomes_project 10 18041041 18063802 - MGP_C57BL6NJ_P0025160 Pex7 protein_coding protein_coding MGP_C57BL6NJ_T0012707.1 MGP_C57BL6NJ_G0010752.1 mouse_genomes_project 10 43509530 43509608 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0024896.1 MGP_C57BL6NJ_G0017384.1 mouse_genomes_project 10 2765201 2773598 + MGP_C57BL6NJ_P0024896 Vip protein_coding protein_coding MGP_C57BL6NJ_T0026888.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875601 84880034 - MGP_C57BL6NJ_P0026888 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026889.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875604 84879923 - Hmg20b protein_coding retained_intron MGP_C57BL6NJ_T0026890.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875604 84879980 - MGP_C57BL6NJ_P0026890 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026891.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875604 84879978 - MGP_C57BL6NJ_P0026891 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026892.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875604 84879745 - MGP_C57BL6NJ_P0026892 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026893.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875605 84876284 - Hmg20b protein_coding retained_intron MGP_C57BL6NJ_T0026894.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84875605 84879881 - MGP_C57BL6NJ_P0026894 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026895.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84876312 84878639 - MGP_C57BL6NJ_P0026895 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026896.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84876550 84879997 - MGP_C57BL6NJ_P0026896 Hmg20b protein_coding protein_coding MGP_C57BL6NJ_T0026897.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84876551 84877476 - Hmg20b protein_coding retained_intron MGP_C57BL6NJ_T0026898.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84878557 84879873 - Hmg20b protein_coding processed_transcript MGP_C57BL6NJ_T0026899.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84878599 84879871 - Hmg20b protein_coding retained_intron MGP_C57BL6NJ_T0026900.1 MGP_C57BL6NJ_G0017947.1 mouse_genomes_project 10 84878609 84879998 - Hmg20b protein_coding processed_transcript MGP_C57BL6NJ_T0003254.1 MGP_C57BL6NJ_G0003015.1 mouse_genomes_project 10 129326174 129327544 + C030027H14Rik antisense antisense MGP_C57BL6NJ_T0026076.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73045315 73088719 - MGP_C57BL6NJ_P0026076 Phyhipl protein_coding protein_coding MGP_C57BL6NJ_T0026077.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73046307 73148948 - MGP_C57BL6NJ_P0026077 Phyhipl protein_coding protein_coding MGP_C57BL6NJ_T0026078.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73050469 73088694 - Phyhipl protein_coding retained_intron MGP_C57BL6NJ_T0026079.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73054425 73088902 - Phyhipl protein_coding retained_intron MGP_C57BL6NJ_T0026080.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73057503 73148955 - MGP_C57BL6NJ_P0026080 Phyhipl protein_coding protein_coding MGP_C57BL6NJ_T0026081.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73090660 73144915 - Phyhipl protein_coding processed_transcript MGP_C57BL6NJ_T0026082.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73090744 73148953 - Phyhipl protein_coding processed_transcript MGP_C57BL6NJ_T0026083.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73096698 73097173 - Phyhipl protein_coding processed_transcript MGP_C57BL6NJ_T0026084.1 MGP_C57BL6NJ_G0017734.1 mouse_genomes_project 10 73097208 73118353 - Phyhipl protein_coding processed_transcript MGP_C57BL6NJ_T0012732.1 MGP_C57BL6NJ_G0010777.1 mouse_genomes_project 10 108118566 108119511 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027587.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123408507 123510502 - MGP_C57BL6NJ_P0027587 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027588.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123408511 123510487 - MGP_C57BL6NJ_P0027588 Cnot2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027589.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123408511 123473211 - MGP_C57BL6NJ_P0027589 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027590.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123408512 123510491 - MGP_C57BL6NJ_P0027590 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027591.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123409133 123510502 - MGP_C57BL6NJ_P0027591 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027592.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123409543 123510493 - MGP_C57BL6NJ_P0027592 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027593.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123409546 123461289 - MGP_C57BL6NJ_P0027593 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027594.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123421455 123510474 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027595.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123421705 123510484 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027596.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123422736 123510481 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027597.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123422741 123510476 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027598.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123427191 123510456 - MGP_C57BL6NJ_P0027598 Cnot2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027599.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123429532 123510482 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027600.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123432942 123510487 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027601.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123432942 123510502 - MGP_C57BL6NJ_P0027601 Cnot2 protein_coding protein_coding MGP_C57BL6NJ_T0027602.1 MGP_C57BL6NJ_G0018142.1 mouse_genomes_project 10 123433311 123510474 - Cnot2 protein_coding processed_transcript MGP_C57BL6NJ_T0027746.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135010043 135034288 - MGP_C57BL6NJ_P0027746 Tsfm protein_coding protein_coding MGP_C57BL6NJ_T0027747.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135025816 135034325 - MGP_C57BL6NJ_P0027747 Tsfm protein_coding protein_coding MGP_C57BL6NJ_T0027748.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135025932 135028582 - Tsfm protein_coding retained_intron MGP_C57BL6NJ_T0027749.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135026110 135033876 - Tsfm protein_coding processed_transcript MGP_C57BL6NJ_T0027750.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135026392 135034244 - Tsfm protein_coding retained_intron MGP_C57BL6NJ_T0027751.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135027719 135034284 - MGP_C57BL6NJ_P0027751 Tsfm protein_coding protein_coding MGP_C57BL6NJ_T0027752.1 MGP_C57BL6NJ_G0018193.1 mouse_genomes_project 10 135032706 135034288 - Tsfm protein_coding retained_intron MGP_C57BL6NJ_T0011543.1 MGP_C57BL6NJ_G0009628.1 mouse_genomes_project 10 99652427 99652731 + Gm25266 misc_RNA misc_RNA MGP_C57BL6NJ_T0099710.1 MGP_C57BL6NJ_G0037756.1 mouse_genomes_project 10 94078256 94078363 - Gm26180 snRNA snRNA MGP_C57BL6NJ_T0028056.1 MGP_C57BL6NJ_G0018313.1 mouse_genomes_project 10 138053798 138054734 + MGP_C57BL6NJ_P0028056 Olfr799 protein_coding protein_coding MGP_C57BL6NJ_T0025201.1 MGP_C57BL6NJ_G0017460.1 mouse_genomes_project 10 19897805 19927065 + MGP_C57BL6NJ_P0025201 1700020N01Rik protein_coding protein_coding MGP_C57BL6NJ_T0025202.1 MGP_C57BL6NJ_G0017460.1 mouse_genomes_project 10 19920980 19926454 + 1700020N01Rik protein_coding processed_transcript MGP_C57BL6NJ_T0006230.1 MGP_C57BL6NJ_G0005212.1 mouse_genomes_project 10 6928275 6932428 - Gm28904 lincRNA lincRNA MGP_C57BL6NJ_T0099683.1 MGP_C57BL6NJ_G0037729.1 mouse_genomes_project 10 44771736 44771824 - Gm22087 snRNA snRNA MGP_C57BL6NJ_T0027878.1 MGP_C57BL6NJ_G0018235.1 mouse_genomes_project 10 135986173 135990846 - MGP_C57BL6NJ_P0027878 Rdh7 protein_coding protein_coding MGP_C57BL6NJ_T0027879.1 MGP_C57BL6NJ_G0018235.1 mouse_genomes_project 10 135989502 135990359 - Rdh7 protein_coding processed_transcript MGP_C57BL6NJ_T0003224.1 MGP_C57BL6NJ_G0002995.1 mouse_genomes_project 10 90032548 90036576 + Gm15990 antisense antisense MGP_C57BL6NJ_T0009837.1 MGP_C57BL6NJ_G0007922.1 mouse_genomes_project 10 136674496 136674585 + Mir8105 miRNA miRNA MGP_C57BL6NJ_T0012685.1 MGP_C57BL6NJ_G0010730.1 mouse_genomes_project 10 15849287 15850227 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026795.1 MGP_C57BL6NJ_G0017920.1 mouse_genomes_project 10 84344811 84367752 + MGP_C57BL6NJ_P0026795 Tmprss9 protein_coding protein_coding MGP_C57BL6NJ_T0006262.1 MGP_C57BL6NJ_G0005239.1 mouse_genomes_project 10 68185965 68354488 - 1700023F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006263.1 MGP_C57BL6NJ_G0005239.1 mouse_genomes_project 10 68185965 68190542 - 1700023F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006264.1 MGP_C57BL6NJ_G0005239.1 mouse_genomes_project 10 68185969 68190563 - 1700023F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006265.1 MGP_C57BL6NJ_G0005239.1 mouse_genomes_project 10 68185969 68190556 - 1700023F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006266.1 MGP_C57BL6NJ_G0005239.1 mouse_genomes_project 10 68186036 68189568 - 1700023F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0027993.1 MGP_C57BL6NJ_G0018272.1 mouse_genomes_project 10 136940321 136947438 - MGP_C57BL6NJ_P0027993 Cdk2 protein_coding protein_coding MGP_C57BL6NJ_T0027994.1 MGP_C57BL6NJ_G0018272.1 mouse_genomes_project 10 136940321 136947438 - MGP_C57BL6NJ_P0027994 Cdk2 protein_coding protein_coding MGP_C57BL6NJ_T0025688.1 MGP_C57BL6NJ_G0017639.1 mouse_genomes_project 10 59417470 59419201 - MGP_C57BL6NJ_P0025688 Gm4981 protein_coding protein_coding MGP_C57BL6NJ_T0009840.1 MGP_C57BL6NJ_G0007925.1 mouse_genomes_project 10 136818357 136818418 - Mir6917 miRNA miRNA MGP_C57BL6NJ_T0027967.1 MGP_C57BL6NJ_G0018264.1 mouse_genomes_project 10 136775102 136780916 - MGP_C57BL6NJ_P0027967 Zc3h10 protein_coding protein_coding MGP_C57BL6NJ_T0027968.1 MGP_C57BL6NJ_G0018264.1 mouse_genomes_project 10 136777939 136780885 - Zc3h10 protein_coding processed_transcript MGP_C57BL6NJ_T0027969.1 MGP_C57BL6NJ_G0018264.1 mouse_genomes_project 10 136778221 136780781 - Zc3h10 protein_coding processed_transcript MGP_C57BL6NJ_T0027970.1 MGP_C57BL6NJ_G0018264.1 mouse_genomes_project 10 136778479 136780867 - Zc3h10 protein_coding processed_transcript MGP_C57BL6NJ_T0026292.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79734847 79799927 - MGP_C57BL6NJ_P0026292 Pcbp3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026293.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79734852 79942495 - MGP_C57BL6NJ_P0026293 Pcbp3 protein_coding protein_coding MGP_C57BL6NJ_T0026294.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79734853 79795992 - Pcbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0026295.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79734853 79799064 - MGP_C57BL6NJ_P0026295 Pcbp3 protein_coding protein_coding MGP_C57BL6NJ_T0026296.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79734855 79942594 - MGP_C57BL6NJ_P0026296 Pcbp3 protein_coding protein_coding MGP_C57BL6NJ_T0026297.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79735227 79770895 - Pcbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0026298.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79735365 79761453 - MGP_C57BL6NJ_P0026298 Pcbp3 protein_coding protein_coding MGP_C57BL6NJ_T0026299.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79736300 79789857 - MGP_C57BL6NJ_P0026299 Pcbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026300.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79762833 79882788 - Pcbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0026301.1 MGP_C57BL6NJ_G0017785.1 mouse_genomes_project 10 79770878 79792602 - Pcbp3 protein_coding processed_transcript MGP_C57BL6NJ_T0100972.1 MGP_C57BL6NJ_G0039018.1 mouse_genomes_project 10 61110490 61110622 - Gm23803 snoRNA snoRNA MGP_C57BL6NJ_T0027880.1 MGP_C57BL6NJ_G0018236.1 mouse_genomes_project 10 136000546 136022272 + MGP_C57BL6NJ_P0027880 Sdr9c7 protein_coding protein_coding MGP_C57BL6NJ_T0027881.1 MGP_C57BL6NJ_G0018236.1 mouse_genomes_project 10 136000803 136022261 + Sdr9c7 protein_coding processed_transcript MGP_C57BL6NJ_T0027882.1 MGP_C57BL6NJ_G0018236.1 mouse_genomes_project 10 136004074 136020897 + Sdr9c7 protein_coding processed_transcript MGP_C57BL6NJ_T0027883.1 MGP_C57BL6NJ_G0018236.1 mouse_genomes_project 10 136005442 136020848 + Sdr9c7 protein_coding processed_transcript MGP_C57BL6NJ_T0027636.1 MGP_C57BL6NJ_G0018156.1 mouse_genomes_project 10 124830984 124843960 - MGP_C57BL6NJ_P0027636 protein_coding protein_coding MGP_C57BL6NJ_T0026846.1 MGP_C57BL6NJ_G0017934.1 mouse_genomes_project 10 84690846 84700276 - MGP_C57BL6NJ_P0026846 4930442H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0100968.1 MGP_C57BL6NJ_G0039014.1 mouse_genomes_project 10 48909704 48909833 + Gm23584 snoRNA snoRNA MGP_C57BL6NJ_T0027578.1 MGP_C57BL6NJ_G0018138.1 mouse_genomes_project 10 122910087 123172870 + MGP_C57BL6NJ_P0027578 Ptprr protein_coding protein_coding MGP_C57BL6NJ_T0027579.1 MGP_C57BL6NJ_G0018138.1 mouse_genomes_project 10 122910161 123007443 + Ptprr protein_coding processed_transcript MGP_C57BL6NJ_T0027581.1 MGP_C57BL6NJ_G0018138.1 mouse_genomes_project 10 123036089 123172875 + MGP_C57BL6NJ_P0027581 Ptprr protein_coding protein_coding MGP_C57BL6NJ_T0027582.1 MGP_C57BL6NJ_G0018138.1 mouse_genomes_project 10 123086384 123133255 + Ptprr protein_coding processed_transcript MGP_C57BL6NJ_T0003249.1 MGP_C57BL6NJ_G0003011.1 mouse_genomes_project 10 127022597 127038197 - Grip1os2 antisense antisense MGP_C57BL6NJ_T0003257.1 MGP_C57BL6NJ_G0003018.1 mouse_genomes_project 10 135746804 135751920 - Gm16230 antisense antisense MGP_C57BL6NJ_T0003242.1 MGP_C57BL6NJ_G0003008.1 mouse_genomes_project 10 123396508 123398328 + Kcnmb4os2 antisense antisense MGP_C57BL6NJ_T0003243.1 MGP_C57BL6NJ_G0003008.1 mouse_genomes_project 10 123397373 123398665 + Kcnmb4os2 antisense antisense MGP_C57BL6NJ_T0003244.1 MGP_C57BL6NJ_G0003008.1 mouse_genomes_project 10 123397690 123398333 + Kcnmb4os2 antisense antisense MGP_C57BL6NJ_T0100950.1 MGP_C57BL6NJ_G0038996.1 mouse_genomes_project 10 12789439 12789569 + Gm23892 snoRNA snoRNA MGP_C57BL6NJ_T0026074.1 MGP_C57BL6NJ_G0017733.1 mouse_genomes_project 10 72922205 73045334 + MGP_C57BL6NJ_P0026074 Fam13c protein_coding protein_coding MGP_C57BL6NJ_T0026075.1 MGP_C57BL6NJ_G0017733.1 mouse_genomes_project 10 72922339 73045291 + MGP_C57BL6NJ_P0026075 Fam13c protein_coding protein_coding MGP_C57BL6NJ_T0012692.1 MGP_C57BL6NJ_G0010737.1 mouse_genomes_project 10 20746382 20748783 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025203.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20209308 20342876 + MGP_C57BL6NJ_P0025203 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025204.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20209493 20226256 + Sgk1 protein_coding processed_transcript MGP_C57BL6NJ_T0025205.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20264980 20333372 + MGP_C57BL6NJ_P0025205 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025206.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20322062 20338876 + MGP_C57BL6NJ_P0025206 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025207.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20335192 20342881 + MGP_C57BL6NJ_P0025207 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025208.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20335192 20338857 + MGP_C57BL6NJ_P0025208 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025209.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20336872 20342874 + MGP_C57BL6NJ_P0025209 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025210.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20337665 20338584 + Sgk1 protein_coding retained_intron MGP_C57BL6NJ_T0025211.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20337693 20339324 + Sgk1 protein_coding retained_intron MGP_C57BL6NJ_T0025212.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20337732 20342885 + MGP_C57BL6NJ_P0025212 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025213.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20337892 20340417 + MGP_C57BL6NJ_P0025213 Sgk1 protein_coding protein_coding MGP_C57BL6NJ_T0025214.1 MGP_C57BL6NJ_G0017461.1 mouse_genomes_project 10 20339573 20341223 + Sgk1 protein_coding retained_intron MGP_C57BL6NJ_T0026987.1 MGP_C57BL6NJ_G0017963.1 mouse_genomes_project 10 85177627 85183161 - MGP_C57BL6NJ_P0026987 Sirt6 protein_coding protein_coding MGP_C57BL6NJ_T0026988.1 MGP_C57BL6NJ_G0017963.1 mouse_genomes_project 10 85177629 85183638 - MGP_C57BL6NJ_P0026988 Sirt6 protein_coding protein_coding MGP_C57BL6NJ_T0026989.1 MGP_C57BL6NJ_G0017963.1 mouse_genomes_project 10 85181367 85183407 - Sirt6 protein_coding retained_intron MGP_C57BL6NJ_T0026990.1 MGP_C57BL6NJ_G0017963.1 mouse_genomes_project 10 85181619 85183098 - MGP_C57BL6NJ_P0026990 Sirt6 protein_coding protein_coding MGP_C57BL6NJ_T0025246.1 MGP_C57BL6NJ_G0017477.1 mouse_genomes_project 10 22551856 22552900 + MGP_C57BL6NJ_P0025246 Taar4 protein_coding protein_coding MGP_C57BL6NJ_T0009782.1 MGP_C57BL6NJ_G0007867.1 mouse_genomes_project 10 64352128 64352179 + Mir7215 miRNA miRNA MGP_C57BL6NJ_T0026244.1 MGP_C57BL6NJ_G0017767.1 mouse_genomes_project 10 78830437 78832590 + MGP_C57BL6NJ_P0026244 Chchd10 protein_coding protein_coding MGP_C57BL6NJ_T0026173.1 MGP_C57BL6NJ_G0017748.1 mouse_genomes_project 10 78146169 78164324 + MGP_C57BL6NJ_P0026173 Adora2a protein_coding protein_coding MGP_C57BL6NJ_T0024953.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4947506 4989763 - MGP_C57BL6NJ_P0024953 Pcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0024954.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4949039 4990068 - MGP_C57BL6NJ_P0024954 Pcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0024955.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4949039 4989724 - MGP_C57BL6NJ_P0024955 Pcmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024956.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4959387 4989721 - MGP_C57BL6NJ_P0024956 Pcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0024957.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4959387 4971597 - MGP_C57BL6NJ_P0024957 Pcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0024958.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4961316 4990068 - Pcmt1 protein_coding retained_intron MGP_C57BL6NJ_T0024959.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4965989 5011541 - MGP_C57BL6NJ_P0024959 Pcmt1 protein_coding protein_coding MGP_C57BL6NJ_T0024960.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4970037 4978049 - MGP_C57BL6NJ_P0024960 Pcmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024961.1 MGP_C57BL6NJ_G0017393.1 mouse_genomes_project 10 4971406 4989724 - Pcmt1 protein_coding retained_intron MGP_C57BL6NJ_T0006242.1 MGP_C57BL6NJ_G0005220.1 mouse_genomes_project 10 19998430 20022755 + Gm5420 lincRNA lincRNA MGP_C57BL6NJ_T0006243.1 MGP_C57BL6NJ_G0005220.1 mouse_genomes_project 10 20002864 20004491 + Gm5420 lincRNA lincRNA MGP_C57BL6NJ_T0028033.1 MGP_C57BL6NJ_G0018295.1 mouse_genomes_project 10 137508540 137509476 - MGP_C57BL6NJ_P0028033 Olfr772 protein_coding protein_coding MGP_C57BL6NJ_T0099728.1 MGP_C57BL6NJ_G0037774.1 mouse_genomes_project 10 135453963 135454072 - Gm23819 snRNA snRNA MGP_C57BL6NJ_T0028008.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137186765 137192418 - MGP_C57BL6NJ_P0028008 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028009.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137186993 137191223 - MGP_C57BL6NJ_P0028009 protein_coding protein_coding MGP_C57BL6NJ_T0028010.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137187022 137187800 - protein_coding retained_intron MGP_C57BL6NJ_T0028011.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137187401 137192443 - MGP_C57BL6NJ_P0028011 protein_coding protein_coding MGP_C57BL6NJ_T0028012.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137190471 137192468 - protein_coding retained_intron MGP_C57BL6NJ_T0028014.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137191094 137191876 - MGP_C57BL6NJ_P0028014 protein_coding protein_coding MGP_C57BL6NJ_T0028015.1 MGP_C57BL6NJ_G0018283.1 mouse_genomes_project 10 137191590 137196059 - MGP_C57BL6NJ_P0028015 protein_coding protein_coding MGP_C57BL6NJ_T0024990.1 MGP_C57BL6NJ_G0017403.1 mouse_genomes_project 10 6990449 6993600 - MGP_C57BL6NJ_P0024990 Gm9930 protein_coding protein_coding MGP_C57BL6NJ_T0026833.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84628896 84638686 + MGP_C57BL6NJ_P0026833 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026834.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84629947 84646410 + MGP_C57BL6NJ_P0026834 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026835.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84630225 84642633 + MGP_C57BL6NJ_P0026835 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026836.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84630242 84638297 + MGP_C57BL6NJ_P0026836 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026837.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84630254 84647183 + MGP_C57BL6NJ_P0026837 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026838.1 MGP_C57BL6NJ_G0017931.1 mouse_genomes_project 10 84632149 84642648 + MGP_C57BL6NJ_P0026838 Zbtb7a protein_coding protein_coding MGP_C57BL6NJ_T0026570.1 MGP_C57BL6NJ_G0017867.1 mouse_genomes_project 10 83313448 83322494 + MGP_C57BL6NJ_P0026570 Wdr18 protein_coding protein_coding MGP_C57BL6NJ_T0025586.1 MGP_C57BL6NJ_G0017600.1 mouse_genomes_project 10 44602581 44626025 - MGP_C57BL6NJ_P0025586 Prdm1 protein_coding protein_coding MGP_C57BL6NJ_T0025587.1 MGP_C57BL6NJ_G0017600.1 mouse_genomes_project 10 44603604 44624487 - MGP_C57BL6NJ_P0025587 Prdm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025588.1 MGP_C57BL6NJ_G0017600.1 mouse_genomes_project 10 44603697 44625964 - MGP_C57BL6NJ_P0025588 Prdm1 protein_coding protein_coding MGP_C57BL6NJ_T0025589.1 MGP_C57BL6NJ_G0017600.1 mouse_genomes_project 10 44613994 44698699 - Prdm1 protein_coding processed_transcript MGP_C57BL6NJ_T0027420.1 MGP_C57BL6NJ_G0018078.1 mouse_genomes_project 10 102859256 102859571 - MGP_C57BL6NJ_P0027420 Gm10754 protein_coding protein_coding MGP_C57BL6NJ_T0099681.1 MGP_C57BL6NJ_G0037727.1 mouse_genomes_project 10 39444368 39444484 + Gm22105 snRNA snRNA MGP_C57BL6NJ_T0102724.1 MGP_C57BL6NJ_G0040519.1 mouse_genomes_project 10 137991166 137991929 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0025603.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49620847 50397240 - MGP_C57BL6NJ_P0025603 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025604.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49621230 49791335 - Grik2 protein_coding retained_intron MGP_C57BL6NJ_T0025605.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49621230 50391733 - MGP_C57BL6NJ_P0025605 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025606.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49622114 50391733 - MGP_C57BL6NJ_P0025606 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025607.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49622376 50391883 - MGP_C57BL6NJ_P0025607 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025608.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49622515 49625319 - Grik2 protein_coding retained_intron MGP_C57BL6NJ_T0025609.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 49626431 50391733 - MGP_C57BL6NJ_P0025609 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025610.1 MGP_C57BL6NJ_G0017606.1 mouse_genomes_project 10 50082505 50397228 - MGP_C57BL6NJ_P0025610 Grik2 protein_coding protein_coding MGP_C57BL6NJ_T0025451.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39976859 40001895 - MGP_C57BL6NJ_P0025451 Rpf2 protein_coding protein_coding MGP_C57BL6NJ_T0025452.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39977040 40001929 - MGP_C57BL6NJ_P0025452 Rpf2 protein_coding protein_coding MGP_C57BL6NJ_T0025453.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39977296 39981412 - Rpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0025454.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39977426 40001896 - MGP_C57BL6NJ_P0025454 Rpf2 protein_coding protein_coding MGP_C57BL6NJ_T0025455.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39977501 40001920 - MGP_C57BL6NJ_P0025455 Rpf2 protein_coding protein_coding MGP_C57BL6NJ_T0025456.1 MGP_C57BL6NJ_G0017558.1 mouse_genomes_project 10 39978953 40001886 - MGP_C57BL6NJ_P0025456 Rpf2 protein_coding protein_coding MGP_C57BL6NJ_T0027480.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111012543 111061443 - Tmtc2 protein_coding processed_transcript MGP_C57BL6NJ_T0027481.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111012543 111430157 - MGP_C57BL6NJ_P0027481 Tmtc2 protein_coding protein_coding MGP_C57BL6NJ_T0027482.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111014383 111061428 - Tmtc2 protein_coding processed_transcript MGP_C57BL6NJ_T0027483.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111014542 111024826 - Tmtc2 protein_coding processed_transcript MGP_C57BL6NJ_T0027484.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111100918 111430173 - Tmtc2 protein_coding retained_intron MGP_C57BL6NJ_T0027485.1 MGP_C57BL6NJ_G0018100.1 mouse_genomes_project 10 111256894 111389662 - Tmtc2 protein_coding processed_transcript MGP_C57BL6NJ_T0026848.1 MGP_C57BL6NJ_G0017936.1 mouse_genomes_project 10 84711652 84715520 - MGP_C57BL6NJ_P0026848 Nmrk2 protein_coding protein_coding MGP_C57BL6NJ_T0027873.1 MGP_C57BL6NJ_G0018232.1 mouse_genomes_project 10 135884535 135899634 + MGP_C57BL6NJ_P0027873 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027874.1 MGP_C57BL6NJ_G0018232.1 mouse_genomes_project 10 135884536 135942988 + MGP_C57BL6NJ_P0027874 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027875.1 MGP_C57BL6NJ_G0018232.1 mouse_genomes_project 10 135884537 135902388 + MGP_C57BL6NJ_P0027875 protein_coding protein_coding MGP_C57BL6NJ_T0026628.1 MGP_C57BL6NJ_G0017878.1 mouse_genomes_project 10 83506475 83510246 + Atp5d protein_coding processed_transcript MGP_C57BL6NJ_T0026629.1 MGP_C57BL6NJ_G0017878.1 mouse_genomes_project 10 83507388 83513668 + MGP_C57BL6NJ_P0026629 Atp5d protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026630.1 MGP_C57BL6NJ_G0017878.1 mouse_genomes_project 10 83509302 83513659 + MGP_C57BL6NJ_P0026630 Atp5d protein_coding protein_coding MGP_C57BL6NJ_T0026631.1 MGP_C57BL6NJ_G0017878.1 mouse_genomes_project 10 83510160 83513664 + MGP_C57BL6NJ_P0026631 Atp5d protein_coding protein_coding MGP_C57BL6NJ_T0026632.1 MGP_C57BL6NJ_G0017878.1 mouse_genomes_project 10 83510215 83513658 + MGP_C57BL6NJ_P0026632 Atp5d protein_coding protein_coding MGP_C57BL6NJ_T0009800.1 MGP_C57BL6NJ_G0007885.1 mouse_genomes_project 10 84919358 84919424 + Mir6913 miRNA miRNA MGP_C57BL6NJ_T0012719.1 MGP_C57BL6NJ_G0010764.1 mouse_genomes_project 10 75849982 75851054 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027689.1 MGP_C57BL6NJ_G0018171.1 mouse_genomes_project 10 128190849 128262334 - Msrb3 protein_coding processed_transcript MGP_C57BL6NJ_T0027690.1 MGP_C57BL6NJ_G0018171.1 mouse_genomes_project 10 128190991 128282632 - MGP_C57BL6NJ_P0027690 Msrb3 protein_coding protein_coding MGP_C57BL6NJ_T0027691.1 MGP_C57BL6NJ_G0018171.1 mouse_genomes_project 10 128191165 128326395 - MGP_C57BL6NJ_P0027691 Msrb3 protein_coding protein_coding MGP_C57BL6NJ_T0100964.1 MGP_C57BL6NJ_G0039010.1 mouse_genomes_project 10 40013283 40013496 + Rnu3a snoRNA snoRNA MGP_C57BL6NJ_T0011534.1 MGP_C57BL6NJ_G0009619.1 mouse_genomes_project 10 81594188 81594496 - Gm22514 misc_RNA misc_RNA MGP_C57BL6NJ_T0025060.1 MGP_C57BL6NJ_G0017418.1 mouse_genomes_project 10 10860211 10876905 - MGP_C57BL6NJ_P0025060 Ltv1 protein_coding protein_coding MGP_C57BL6NJ_T0027541.1 MGP_C57BL6NJ_G0018122.1 mouse_genomes_project 10 118385499 118399048 - MGP_C57BL6NJ_P0027541 Glipr1 protein_coding protein_coding MGP_C57BL6NJ_T0027542.1 MGP_C57BL6NJ_G0018122.1 mouse_genomes_project 10 118385506 118405338 - MGP_C57BL6NJ_P0027542 Glipr1 protein_coding protein_coding MGP_C57BL6NJ_T0027543.1 MGP_C57BL6NJ_G0018122.1 mouse_genomes_project 10 118385511 118395272 - MGP_C57BL6NJ_P0027543 Glipr1 protein_coding protein_coding MGP_C57BL6NJ_T0027544.1 MGP_C57BL6NJ_G0018122.1 mouse_genomes_project 10 118395244 118405348 - Glipr1 protein_coding processed_transcript MGP_C57BL6NJ_T0027545.1 MGP_C57BL6NJ_G0018122.1 mouse_genomes_project 10 118395344 118397599 - Glipr1 protein_coding processed_transcript MGP_C57BL6NJ_T0027786.1 MGP_C57BL6NJ_G0018206.1 mouse_genomes_project 10 135216065 135230642 - MGP_C57BL6NJ_P0027786 Pip4k2c protein_coding protein_coding MGP_C57BL6NJ_T0006268.1 MGP_C57BL6NJ_G0005241.1 mouse_genomes_project 10 69064703 69072471 - 1110002J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0003258.1 MGP_C57BL6NJ_G0003019.1 mouse_genomes_project 10 136602995 136606717 - Gm17201 antisense antisense MGP_C57BL6NJ_T0003166.1 MGP_C57BL6NJ_G0002950.1 mouse_genomes_project 10 24300874 24439237 + Gm29571 antisense antisense MGP_C57BL6NJ_T0025294.1 MGP_C57BL6NJ_G0017498.1 mouse_genomes_project 10 24780477 24872800 - MGP_C57BL6NJ_P0025294 Tmem200a protein_coding protein_coding MGP_C57BL6NJ_T0100948.1 MGP_C57BL6NJ_G0038994.1 mouse_genomes_project 10 10004957 10005167 + Gm25139 snoRNA snoRNA MGP_C57BL6NJ_T0027220.1 MGP_C57BL6NJ_G0018031.1 mouse_genomes_project 10 92875553 92958371 - MGP_C57BL6NJ_P0027220 Utp20 protein_coding protein_coding MGP_C57BL6NJ_T0027031.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86315548 86364215 - MGP_C57BL6NJ_P0027031 Glt8d2 protein_coding protein_coding MGP_C57BL6NJ_T0027032.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86316423 86318315 - Glt8d2 protein_coding retained_intron MGP_C57BL6NJ_T0027033.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86316676 86318096 - MGP_C57BL6NJ_P0027033 Glt8d2 protein_coding protein_coding MGP_C57BL6NJ_T0027034.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86317658 86364182 - MGP_C57BL6NJ_P0027034 Glt8d2 protein_coding protein_coding MGP_C57BL6NJ_T0027035.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86319887 86364182 - MGP_C57BL6NJ_P0027035 Glt8d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027036.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86336896 86342728 - MGP_C57BL6NJ_P0027036 Glt8d2 protein_coding protein_coding MGP_C57BL6NJ_T0027037.1 MGP_C57BL6NJ_G0017978.1 mouse_genomes_project 10 86341538 86364194 - Glt8d2 protein_coding retained_intron MGP_C57BL6NJ_T0006234.1 MGP_C57BL6NJ_G0005215.1 mouse_genomes_project 10 10591219 10597668 - B230208H11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006235.1 MGP_C57BL6NJ_G0005215.1 mouse_genomes_project 10 10591250 10597658 - B230208H11Rik lincRNA lincRNA MGP_C57BL6NJ_T0012696.1 MGP_C57BL6NJ_G0010741.1 mouse_genomes_project 10 24625554 24626120 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026111.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 75734666 77076626 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026112.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 75734759 76414609 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026113.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 75734777 76163789 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026114.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533620 77433721 + MGP_C57BL6NJ_P0026114 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026115.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533620 77417400 + MGP_C57BL6NJ_P0026115 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026116.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77416233 + MGP_C57BL6NJ_P0026116 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026117.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026117 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026118.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026118 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026119.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026119 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026120.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026120 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026121.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026121 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026122.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415171 + MGP_C57BL6NJ_P0026122 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026123.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77435658 + MGP_C57BL6NJ_P0026123 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026124.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77439096 + MGP_C57BL6NJ_P0026124 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026125.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026125 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026126.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026126 Pcdh15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026127.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77435822 + MGP_C57BL6NJ_P0026127 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026128.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026128 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026129.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026129 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026130.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026130 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026131.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026131 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026132.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026132 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026133.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026133 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026134.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77434071 + MGP_C57BL6NJ_P0026134 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026135.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026135 Pcdh15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026136.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026136 Pcdh15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026137.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77415299 + MGP_C57BL6NJ_P0026137 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026138.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533636 77435658 + MGP_C57BL6NJ_P0026138 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026139.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533696 77286241 + MGP_C57BL6NJ_P0026139 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026140.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533696 77286241 + MGP_C57BL6NJ_P0026140 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026141.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76533696 77286241 + MGP_C57BL6NJ_P0026141 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026142.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76670041 77435512 + MGP_C57BL6NJ_P0026142 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026143.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76670041 77433562 + MGP_C57BL6NJ_P0026143 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026144.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 76670041 77435416 + MGP_C57BL6NJ_P0026144 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026145.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77061476 77094973 + Pcdh15 protein_coding processed_transcript MGP_C57BL6NJ_T0026146.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77116391 77415302 + MGP_C57BL6NJ_P0026146 Pcdh15 protein_coding protein_coding MGP_C57BL6NJ_T0026147.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77148546 77159424 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026148.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77364385 77407251 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026149.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77413546 77435558 + Pcdh15 protein_coding processed_transcript MGP_C57BL6NJ_T0026150.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77414043 77419315 + Pcdh15 protein_coding retained_intron MGP_C57BL6NJ_T0026151.1 MGP_C57BL6NJ_G0017742.1 mouse_genomes_project 10 77414468 77431708 + Pcdh15 protein_coding processed_transcript MGP_C57BL6NJ_T0026944.1 MGP_C57BL6NJ_G0017956.1 mouse_genomes_project 10 85042705 85044890 - MGP_C57BL6NJ_P0026944 S1pr4 protein_coding protein_coding MGP_C57BL6NJ_T0027080.1 MGP_C57BL6NJ_G0017989.1 mouse_genomes_project 10 87441280 87481777 + MGP_C57BL6NJ_P0027080 1500009L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0026924.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84929233 84962214 - MGP_C57BL6NJ_P0026924 Nfic protein_coding protein_coding MGP_C57BL6NJ_T0026925.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84932185 84962200 - MGP_C57BL6NJ_P0026925 Nfic protein_coding protein_coding MGP_C57BL6NJ_T0026926.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84932185 84962141 - MGP_C57BL6NJ_P0026926 Nfic protein_coding protein_coding MGP_C57BL6NJ_T0026927.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84932243 84933602 - Nfic protein_coding processed_transcript MGP_C57BL6NJ_T0026928.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84933816 84940656 - MGP_C57BL6NJ_P0026928 Nfic protein_coding protein_coding MGP_C57BL6NJ_T0026929.1 MGP_C57BL6NJ_G0017953.1 mouse_genomes_project 10 84934000 84967973 - MGP_C57BL6NJ_P0026929 Nfic protein_coding protein_coding MGP_C57BL6NJ_T0100965.1 MGP_C57BL6NJ_G0039011.1 mouse_genomes_project 10 41073051 41073183 + Gm25526 snoRNA snoRNA MGP_C57BL6NJ_T0027978.1 MGP_C57BL6NJ_G0018266.1 mouse_genomes_project 10 136790704 136798873 - MGP_C57BL6NJ_P0027978 Pa2g4 protein_coding protein_coding MGP_C57BL6NJ_T0027979.1 MGP_C57BL6NJ_G0018266.1 mouse_genomes_project 10 136792376 136798766 - MGP_C57BL6NJ_P0027979 Pa2g4 protein_coding protein_coding MGP_C57BL6NJ_T0027980.1 MGP_C57BL6NJ_G0018266.1 mouse_genomes_project 10 136796090 136798808 - Pa2g4 protein_coding retained_intron MGP_C57BL6NJ_T0027007.1 MGP_C57BL6NJ_G0017967.1 mouse_genomes_project 10 85279516 85285441 + protein_coding processed_transcript MGP_C57BL6NJ_T0025182.1 MGP_C57BL6NJ_G0017453.1 mouse_genomes_project 10 18546245 18561463 + MGP_C57BL6NJ_P0025182 Mtfr2 protein_coding protein_coding MGP_C57BL6NJ_T0027008.1 MGP_C57BL6NJ_G0017968.1 mouse_genomes_project 10 85304769 85306290 - MGP_C57BL6NJ_P0027008 protein_coding protein_coding MGP_C57BL6NJ_T0026319.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321348 80453812 - MGP_C57BL6NJ_P0026319 Adarb1 protein_coding protein_coding MGP_C57BL6NJ_T0026320.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321348 80453807 - MGP_C57BL6NJ_P0026320 Adarb1 protein_coding protein_coding MGP_C57BL6NJ_T0026321.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321349 80453812 - MGP_C57BL6NJ_P0026321 Adarb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026322.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321349 80453769 - MGP_C57BL6NJ_P0026322 Adarb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026323.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321349 80453769 - MGP_C57BL6NJ_P0026323 Adarb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026324.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80321350 80453812 - MGP_C57BL6NJ_P0026324 Adarb1 protein_coding protein_coding MGP_C57BL6NJ_T0026325.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80346700 80453753 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026326.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80346714 80453807 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026327.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80354953 80453780 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026328.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80357500 80453396 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026329.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80357691 80453759 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026330.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80357877 80372507 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0026331.1 MGP_C57BL6NJ_G0017791.1 mouse_genomes_project 10 80357952 80404767 - Adarb1 protein_coding retained_intron MGP_C57BL6NJ_T0025683.1 MGP_C57BL6NJ_G0017637.1 mouse_genomes_project 10 58943036 58946606 + MGP_C57BL6NJ_P0025683 Fabp7 protein_coding protein_coding MGP_C57BL6NJ_T0025684.1 MGP_C57BL6NJ_G0017637.1 mouse_genomes_project 10 58943078 58944968 + MGP_C57BL6NJ_P0025684 Fabp7 protein_coding protein_coding MGP_C57BL6NJ_T0017594.1 MGP_C57BL6NJ_G0015533.1 mouse_genomes_project 10 111429674 111437762 + Gm15663 processed_transcript antisense MGP_C57BL6NJ_T0017595.1 MGP_C57BL6NJ_G0015533.1 mouse_genomes_project 10 111430280 111439596 + Gm15663 processed_transcript lincRNA MGP_C57BL6NJ_T0027005.1 MGP_C57BL6NJ_G0017965.1 mouse_genomes_project 10 85204837 85225202 + MGP_C57BL6NJ_P0027005 protein_coding protein_coding MGP_C57BL6NJ_T0024938.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4176172 4272281 - MGP_C57BL6NJ_P0024938 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0024939.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4180815 4271626 - MGP_C57BL6NJ_P0024939 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0024940.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4202335 4350620 - MGP_C57BL6NJ_P0024940 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0024941.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4202335 4315179 - MGP_C57BL6NJ_P0024941 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0024942.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4208345 4272219 - Ipcef1 protein_coding processed_transcript MGP_C57BL6NJ_T0024943.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4208345 4272370 - Ipcef1 protein_coding processed_transcript MGP_C57BL6NJ_T0024944.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4210626 4315161 - MGP_C57BL6NJ_P0024944 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0024945.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4210706 4272439 - Ipcef1 protein_coding processed_transcript MGP_C57BL6NJ_T0024946.1 MGP_C57BL6NJ_G0017390.1 mouse_genomes_project 10 4249429 4294006 - MGP_C57BL6NJ_P0024946 Ipcef1 protein_coding protein_coding MGP_C57BL6NJ_T0026239.1 MGP_C57BL6NJ_G0017766.1 mouse_genomes_project 10 78816876 78817648 - MGP_C57BL6NJ_P0026239 Mmp11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026240.1 MGP_C57BL6NJ_G0017766.1 mouse_genomes_project 10 78816876 78826130 - MGP_C57BL6NJ_P0026240 Mmp11 protein_coding protein_coding MGP_C57BL6NJ_T0026241.1 MGP_C57BL6NJ_G0017766.1 mouse_genomes_project 10 78816876 78826157 - MGP_C57BL6NJ_P0026241 Mmp11 protein_coding protein_coding MGP_C57BL6NJ_T0026242.1 MGP_C57BL6NJ_G0017766.1 mouse_genomes_project 10 78816877 78820067 - MGP_C57BL6NJ_P0026242 Mmp11 protein_coding protein_coding MGP_C57BL6NJ_T0026243.1 MGP_C57BL6NJ_G0017766.1 mouse_genomes_project 10 78820414 78821345 - Mmp11 protein_coding retained_intron MGP_C57BL6NJ_T0025033.1 MGP_C57BL6NJ_G0017415.1 mouse_genomes_project 10 10677518 10681363 + MGP_C57BL6NJ_P0025033 Sf3b5 protein_coding protein_coding MGP_C57BL6NJ_T0012698.1 MGP_C57BL6NJ_G0010743.1 mouse_genomes_project 10 25522390 25523402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027016.1 MGP_C57BL6NJ_G0017973.1 mouse_genomes_project 10 85895838 85899001 - MGP_C57BL6NJ_P0027016 4932415D10Rik protein_coding protein_coding MGP_C57BL6NJ_T0025759.1 MGP_C57BL6NJ_G0017663.1 mouse_genomes_project 10 61635262 61662261 + MGP_C57BL6NJ_P0025759 Psap protein_coding protein_coding MGP_C57BL6NJ_T0025760.1 MGP_C57BL6NJ_G0017663.1 mouse_genomes_project 10 61635263 61662264 + MGP_C57BL6NJ_P0025760 Psap protein_coding protein_coding MGP_C57BL6NJ_T0025761.1 MGP_C57BL6NJ_G0017663.1 mouse_genomes_project 10 61635263 61662264 + MGP_C57BL6NJ_P0025761 Psap protein_coding protein_coding MGP_C57BL6NJ_T0025762.1 MGP_C57BL6NJ_G0017663.1 mouse_genomes_project 10 61642074 61662264 + MGP_C57BL6NJ_P0025762 Psap protein_coding protein_coding MGP_C57BL6NJ_T0009822.1 MGP_C57BL6NJ_G0007907.1 mouse_genomes_project 10 127797241 127797361 - Mir763 miRNA miRNA MGP_C57BL6NJ_T0003252.1 MGP_C57BL6NJ_G0003013.1 mouse_genomes_project 10 127736506 127739758 + 9230105E05Rik antisense antisense MGP_C57BL6NJ_T0027434.1 MGP_C57BL6NJ_G0018086.1 mouse_genomes_project 10 104789102 104792380 + MGP_C57BL6NJ_P0027434 Gad1-ps protein_coding protein_coding MGP_C57BL6NJ_T0027999.1 MGP_C57BL6NJ_G0018277.1 mouse_genomes_project 10 137059305 137063640 - MGP_C57BL6NJ_P0027999 Tmem198b protein_coding protein_coding MGP_C57BL6NJ_T0028000.1 MGP_C57BL6NJ_G0018277.1 mouse_genomes_project 10 137059374 137063231 - MGP_C57BL6NJ_P0028000 Tmem198b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028001.1 MGP_C57BL6NJ_G0018277.1 mouse_genomes_project 10 137060110 137062987 - MGP_C57BL6NJ_P0028001 Tmem198b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025350.1 MGP_C57BL6NJ_G0017519.1 mouse_genomes_project 10 30443316 30458121 + MGP_C57BL6NJ_P0025350 Hddc2 protein_coding protein_coding MGP_C57BL6NJ_T0025351.1 MGP_C57BL6NJ_G0017519.1 mouse_genomes_project 10 30443339 30446967 + Hddc2 protein_coding retained_intron MGP_C57BL6NJ_T0025352.1 MGP_C57BL6NJ_G0017519.1 mouse_genomes_project 10 30443341 30447778 + Hddc2 protein_coding retained_intron MGP_C57BL6NJ_T0025353.1 MGP_C57BL6NJ_G0017519.1 mouse_genomes_project 10 30443406 30458101 + MGP_C57BL6NJ_P0025353 Hddc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025354.1 MGP_C57BL6NJ_G0017519.1 mouse_genomes_project 10 30450088 30458119 + Hddc2 protein_coding retained_intron MGP_C57BL6NJ_T0099703.1 MGP_C57BL6NJ_G0037749.1 mouse_genomes_project 10 83887288 83887392 + Gm25044 snRNA snRNA MGP_C57BL6NJ_T0027236.1 MGP_C57BL6NJ_G0018035.1 mouse_genomes_project 10 93660691 93715957 - MGP_C57BL6NJ_P0027236 Nr1h4 protein_coding protein_coding MGP_C57BL6NJ_T0027237.1 MGP_C57BL6NJ_G0018035.1 mouse_genomes_project 10 93660691 93715966 - MGP_C57BL6NJ_P0027237 Nr1h4 protein_coding protein_coding MGP_C57BL6NJ_T0027238.1 MGP_C57BL6NJ_G0018035.1 mouse_genomes_project 10 93660830 93744969 - MGP_C57BL6NJ_P0027238 Nr1h4 protein_coding protein_coding MGP_C57BL6NJ_T0028043.1 MGP_C57BL6NJ_G0018303.1 mouse_genomes_project 10 137824825 137835154 + MGP_C57BL6NJ_P0028043 Olfr786 protein_coding protein_coding MGP_C57BL6NJ_T0028044.1 MGP_C57BL6NJ_G0018303.1 mouse_genomes_project 10 137834215 137835154 + MGP_C57BL6NJ_P0028044 Olfr786 protein_coding protein_coding MGP_C57BL6NJ_T0025666.1 MGP_C57BL6NJ_G0017633.1 mouse_genomes_project 10 57808062 57811183 + MGP_C57BL6NJ_P0025666 Gm9956 protein_coding protein_coding MGP_C57BL6NJ_T0028042.1 MGP_C57BL6NJ_G0018302.1 mouse_genomes_project 10 137800510 137801449 + MGP_C57BL6NJ_P0028042 Gm44444 protein_coding protein_coding MGP_C57BL6NJ_T0003184.1 MGP_C57BL6NJ_G0002964.1 mouse_genomes_project 10 62350349 62360555 + Gm26947 antisense antisense MGP_C57BL6NJ_T0027176.1 MGP_C57BL6NJ_G0018022.1 mouse_genomes_project 10 92211182 92244192 + MGP_C57BL6NJ_P0027176 Nup37 protein_coding protein_coding MGP_C57BL6NJ_T0027177.1 MGP_C57BL6NJ_G0018022.1 mouse_genomes_project 10 92211261 92244192 + MGP_C57BL6NJ_P0027177 Nup37 protein_coding protein_coding MGP_C57BL6NJ_T0027710.1 MGP_C57BL6NJ_G0018181.1 mouse_genomes_project 10 129326197 129601797 - MGP_C57BL6NJ_P0027710 Srgap1 protein_coding protein_coding MGP_C57BL6NJ_T0027711.1 MGP_C57BL6NJ_G0018181.1 mouse_genomes_project 10 129326197 129601790 - MGP_C57BL6NJ_P0027711 Srgap1 protein_coding protein_coding MGP_C57BL6NJ_T0027712.1 MGP_C57BL6NJ_G0018181.1 mouse_genomes_project 10 129330446 129352302 - Srgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0027713.1 MGP_C57BL6NJ_G0018181.1 mouse_genomes_project 10 129351837 129368441 - MGP_C57BL6NJ_P0027713 Srgap1 protein_coding protein_coding MGP_C57BL6NJ_T0027714.1 MGP_C57BL6NJ_G0018181.1 mouse_genomes_project 10 129449522 129601797 - Srgap1 protein_coding retained_intron MGP_C57BL6NJ_T0009838.1 MGP_C57BL6NJ_G0007923.1 mouse_genomes_project 10 136734403 136734466 - Mir6916 miRNA miRNA MGP_C57BL6NJ_T0098947.1 MGP_C57BL6NJ_G0037011.1 mouse_genomes_project 10 30447103 30447216 - n-R5s76 rRNA rRNA MGP_C57BL6NJ_T0000960.1 MGP_C57BL6NJ_G0000870.1 mouse_genomes_project 10 116242352 116242644 - TEC TEC MGP_C57BL6NJ_T0025139.1 MGP_C57BL6NJ_G0017440.1 mouse_genomes_project 10 16944607 16956560 + MGP_C57BL6NJ_P0025139 Perp protein_coding protein_coding MGP_C57BL6NJ_T0025389.1 MGP_C57BL6NJ_G0017541.1 mouse_genomes_project 10 35971937 36313093 + MGP_C57BL6NJ_P0025389 Hs3st5 protein_coding protein_coding MGP_C57BL6NJ_T0025390.1 MGP_C57BL6NJ_G0017541.1 mouse_genomes_project 10 35971942 36313709 + MGP_C57BL6NJ_P0025390 Hs3st5 protein_coding protein_coding MGP_C57BL6NJ_T0025391.1 MGP_C57BL6NJ_G0017541.1 mouse_genomes_project 10 35972012 36170822 + Hs3st5 protein_coding retained_intron MGP_C57BL6NJ_T0025392.1 MGP_C57BL6NJ_G0017541.1 mouse_genomes_project 10 35972149 36313717 + MGP_C57BL6NJ_P0025392 Hs3st5 protein_coding protein_coding MGP_C57BL6NJ_T0025393.1 MGP_C57BL6NJ_G0017541.1 mouse_genomes_project 10 35972530 36289821 + Hs3st5 protein_coding processed_transcript MGP_C57BL6NJ_T0027935.1 MGP_C57BL6NJ_G0018250.1 mouse_genomes_project 10 136461564 136490450 + MGP_C57BL6NJ_P0027935 Stat2 protein_coding protein_coding MGP_C57BL6NJ_T0027936.1 MGP_C57BL6NJ_G0018250.1 mouse_genomes_project 10 136461564 136490450 + MGP_C57BL6NJ_P0027936 Stat2 protein_coding protein_coding MGP_C57BL6NJ_T0003255.1 MGP_C57BL6NJ_G0003016.1 mouse_genomes_project 10 135667239 135668562 + Gm16217 antisense antisense MGP_C57BL6NJ_T0027024.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86289932 86305027 + Tdg protein_coding processed_transcript MGP_C57BL6NJ_T0027025.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86292320 86315915 + MGP_C57BL6NJ_P0027025 Tdg protein_coding protein_coding MGP_C57BL6NJ_T0027026.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86293043 86307994 + MGP_C57BL6NJ_P0027026 Tdg protein_coding protein_coding MGP_C57BL6NJ_T0027027.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86304830 86314044 + MGP_C57BL6NJ_P0027027 Tdg protein_coding protein_coding MGP_C57BL6NJ_T0027028.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86304866 86308010 + Tdg protein_coding retained_intron MGP_C57BL6NJ_T0027029.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86305144 86314237 + MGP_C57BL6NJ_P0027029 Tdg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027030.1 MGP_C57BL6NJ_G0017977.1 mouse_genomes_project 10 86310482 86311814 + Tdg protein_coding retained_intron MGP_C57BL6NJ_T0012699.1 MGP_C57BL6NJ_G0010744.1 mouse_genomes_project 10 30718607 30719209 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025298.1 MGP_C57BL6NJ_G0017501.1 mouse_genomes_project 10 25080168 25188597 - MGP_C57BL6NJ_P0025298 L3mbtl3 protein_coding protein_coding MGP_C57BL6NJ_T0025299.1 MGP_C57BL6NJ_G0017501.1 mouse_genomes_project 10 25080171 25188597 - MGP_C57BL6NJ_P0025299 L3mbtl3 protein_coding protein_coding MGP_C57BL6NJ_T0025300.1 MGP_C57BL6NJ_G0017501.1 mouse_genomes_project 10 25081152 25189826 - MGP_C57BL6NJ_P0025300 L3mbtl3 protein_coding protein_coding MGP_C57BL6NJ_T0025468.1 MGP_C57BL6NJ_G0017567.1 mouse_genomes_project 10 40918942 40921239 - MGP_C57BL6NJ_P0025468 Gpr6 protein_coding protein_coding MGP_C57BL6NJ_T0012744.1 MGP_C57BL6NJ_G0010789.1 mouse_genomes_project 10 138600833 138601804 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012687.1 MGP_C57BL6NJ_G0010732.1 mouse_genomes_project 10 18841510 18845452 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026817.1 MGP_C57BL6NJ_G0017928.1 mouse_genomes_project 10 84560013 84574123 + MGP_C57BL6NJ_P0026817 Thop1 protein_coding protein_coding MGP_C57BL6NJ_T0026818.1 MGP_C57BL6NJ_G0017928.1 mouse_genomes_project 10 84560105 84566441 + Thop1 protein_coding retained_intron MGP_C57BL6NJ_T0026819.1 MGP_C57BL6NJ_G0017928.1 mouse_genomes_project 10 84560137 84570168 + Thop1 protein_coding processed_transcript MGP_C57BL6NJ_T0026820.1 MGP_C57BL6NJ_G0017928.1 mouse_genomes_project 10 84564842 84570319 + Thop1 protein_coding retained_intron MGP_C57BL6NJ_T0026821.1 MGP_C57BL6NJ_G0017928.1 mouse_genomes_project 10 84570431 84571643 + Thop1 protein_coding retained_intron MGP_C57BL6NJ_T0102711.1 MGP_C57BL6NJ_G0040506.1 mouse_genomes_project 10 22626337 22627392 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026752.1 MGP_C57BL6NJ_G0017905.1 mouse_genomes_project 10 84059187 84078886 + MGP_C57BL6NJ_P0026752 Csnk1g2 protein_coding protein_coding MGP_C57BL6NJ_T0026753.1 MGP_C57BL6NJ_G0017905.1 mouse_genomes_project 10 84067776 84078886 + MGP_C57BL6NJ_P0026753 Csnk1g2 protein_coding protein_coding MGP_C57BL6NJ_T0012678.1 MGP_C57BL6NJ_G0010723.1 mouse_genomes_project 10 891951 895386 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025746.1 MGP_C57BL6NJ_G0017658.1 mouse_genomes_project 10 61263771 61265867 - MGP_C57BL6NJ_P0025746 Ddit4 protein_coding protein_coding MGP_C57BL6NJ_T0027610.1 MGP_C57BL6NJ_G0018149.1 mouse_genomes_project 10 124056643 124147077 - MGP_C57BL6NJ_P0027610 Frs2 protein_coding protein_coding MGP_C57BL6NJ_T0025439.1 MGP_C57BL6NJ_G0017552.1 mouse_genomes_project 10 39594033 39600238 - MGP_C57BL6NJ_P0025439 protein_coding protein_coding MGP_C57BL6NJ_T0025440.1 MGP_C57BL6NJ_G0017552.1 mouse_genomes_project 10 39594033 39603655 - MGP_C57BL6NJ_P0025440 protein_coding protein_coding MGP_C57BL6NJ_T0028054.1 MGP_C57BL6NJ_G0018312.1 mouse_genomes_project 10 138012467 138013400 - MGP_C57BL6NJ_P0028054 Olfr796 protein_coding protein_coding MGP_C57BL6NJ_T0028055.1 MGP_C57BL6NJ_G0018312.1 mouse_genomes_project 10 138012467 138017016 - MGP_C57BL6NJ_P0028055 Olfr796 protein_coding protein_coding MGP_C57BL6NJ_T0026589.1 MGP_C57BL6NJ_G0017873.1 mouse_genomes_project 10 83394426 83395663 - Polr2e protein_coding retained_intron MGP_C57BL6NJ_T0026590.1 MGP_C57BL6NJ_G0017873.1 mouse_genomes_project 10 83394426 83398188 - Polr2e protein_coding retained_intron MGP_C57BL6NJ_T0026591.1 MGP_C57BL6NJ_G0017873.1 mouse_genomes_project 10 83394426 83398273 - MGP_C57BL6NJ_P0026591 Polr2e protein_coding protein_coding MGP_C57BL6NJ_T0026592.1 MGP_C57BL6NJ_G0017873.1 mouse_genomes_project 10 83394428 83398128 - Polr2e protein_coding retained_intron MGP_C57BL6NJ_T0026593.1 MGP_C57BL6NJ_G0017873.1 mouse_genomes_project 10 83394652 83398179 - Polr2e protein_coding retained_intron MGP_C57BL6NJ_T0026209.1 MGP_C57BL6NJ_G0017754.1 mouse_genomes_project 10 78450680 78485353 + MGP_C57BL6NJ_P0026209 Ggt5 protein_coding protein_coding MGP_C57BL6NJ_T0026210.1 MGP_C57BL6NJ_G0017754.1 mouse_genomes_project 10 78450721 78466591 + MGP_C57BL6NJ_P0026210 Ggt5 protein_coding protein_coding MGP_C57BL6NJ_T0026211.1 MGP_C57BL6NJ_G0017754.1 mouse_genomes_project 10 78451132 78466593 + MGP_C57BL6NJ_P0026211 Ggt5 protein_coding protein_coding MGP_C57BL6NJ_T0026212.1 MGP_C57BL6NJ_G0017754.1 mouse_genomes_project 10 78465270 78477919 + Ggt5 protein_coding processed_transcript MGP_C57BL6NJ_T0025484.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41350692 41355381 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025487.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41352222 41355172 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025488.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41352222 41355391 - MGP_C57BL6NJ_P0025488 Smpd2 protein_coding protein_coding MGP_C57BL6NJ_T0025489.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41352228 41355381 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025490.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41352599 41353296 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025491.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41352689 41355148 - MGP_C57BL6NJ_P0025491 Smpd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025492.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41353081 41354730 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025493.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41353409 41355389 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025494.1 MGP_C57BL6NJ_G0017572.1 mouse_genomes_project 10 41354067 41355420 - Smpd2 protein_coding retained_intron MGP_C57BL6NJ_T0025826.1 MGP_C57BL6NJ_G0017682.1 mouse_genomes_project 10 63242764 63253395 + MGP_C57BL6NJ_P0025826 Tysnd1 protein_coding protein_coding MGP_C57BL6NJ_T0006318.1 MGP_C57BL6NJ_G0005272.1 mouse_genomes_project 10 123678076 123685639 - 1700030O20Rik lincRNA lincRNA MGP_C57BL6NJ_T0027611.1 MGP_C57BL6NJ_G0018150.1 mouse_genomes_project 10 124226644 124235706 - MGP_C57BL6NJ_P0027611 Yeats4 protein_coding protein_coding MGP_C57BL6NJ_T0027500.1 MGP_C57BL6NJ_G0018106.1 mouse_genomes_project 10 113477035 113480251 - MGP_C57BL6NJ_P0027500 Myf5 protein_coding protein_coding MGP_C57BL6NJ_T0028083.1 MGP_C57BL6NJ_G0018331.1 mouse_genomes_project 10 138365082 138366015 - MGP_C57BL6NJ_P0028083 protein_coding protein_coding MGP_C57BL6NJ_T0006231.1 MGP_C57BL6NJ_G0005213.1 mouse_genomes_project 10 7493239 7671752 + Gm28905 lincRNA lincRNA MGP_C57BL6NJ_T0017599.1 MGP_C57BL6NJ_G0015537.1 mouse_genomes_project 10 135315893 135316922 - Gm4189 processed_transcript retained_intron MGP_C57BL6NJ_T0017600.1 MGP_C57BL6NJ_G0015537.1 mouse_genomes_project 10 135315893 135316986 - Gm4189 processed_transcript processed_transcript MGP_C57BL6NJ_T0025419.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39039602 39190447 + MGP_C57BL6NJ_P0025419 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025420.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39040511 39242400 + MGP_C57BL6NJ_P0025420 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025421.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39040550 39241442 + MGP_C57BL6NJ_P0025421 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025422.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39091983 39186638 + MGP_C57BL6NJ_P0025422 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025423.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39119500 39242393 + MGP_C57BL6NJ_P0025423 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025424.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39128911 39241374 + MGP_C57BL6NJ_P0025424 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025425.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39129021 39241374 + MGP_C57BL6NJ_P0025425 Fyn protein_coding protein_coding MGP_C57BL6NJ_T0025426.1 MGP_C57BL6NJ_G0017549.1 mouse_genomes_project 10 39209177 39227297 + Fyn protein_coding processed_transcript MGP_C57BL6NJ_T0027490.1 MGP_C57BL6NJ_G0018102.1 mouse_genomes_project 10 111718122 111724889 + Ccdc59 protein_coding retained_intron MGP_C57BL6NJ_T0027491.1 MGP_C57BL6NJ_G0018102.1 mouse_genomes_project 10 111718122 111724889 + MGP_C57BL6NJ_P0027491 Ccdc59 protein_coding protein_coding MGP_C57BL6NJ_T0027492.1 MGP_C57BL6NJ_G0018102.1 mouse_genomes_project 10 111718559 111720038 + Ccdc59 protein_coding retained_intron MGP_C57BL6NJ_T0009817.1 MGP_C57BL6NJ_G0007902.1 mouse_genomes_project 10 110042016 110042124 + Mir6411 miRNA miRNA MGP_C57BL6NJ_T0025292.1 MGP_C57BL6NJ_G0017497.1 mouse_genomes_project 10 24292431 24300756 - MGP_C57BL6NJ_P0025292 Smlr1 protein_coding protein_coding MGP_C57BL6NJ_T0025293.1 MGP_C57BL6NJ_G0017497.1 mouse_genomes_project 10 24296740 24300631 - Smlr1 protein_coding retained_intron MGP_C57BL6NJ_T0027614.1 MGP_C57BL6NJ_G0018152.1 mouse_genomes_project 10 124257681 124259886 + MGP_C57BL6NJ_P0027614 Gm10936 protein_coding protein_coding MGP_C57BL6NJ_T0012716.1 MGP_C57BL6NJ_G0010761.1 mouse_genomes_project 10 62800071 62800518 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028038.1 MGP_C57BL6NJ_G0018299.1 mouse_genomes_project 10 137696992 137698699 + MGP_C57BL6NJ_P0028038 Olfr780 protein_coding protein_coding MGP_C57BL6NJ_T0100946.1 MGP_C57BL6NJ_G0038992.1 mouse_genomes_project 10 9258601 9258731 + Gm22546 snoRNA snoRNA MGP_C57BL6NJ_T0025834.1 MGP_C57BL6NJ_G0017684.1 mouse_genomes_project 10 63307371 63356124 - MGP_C57BL6NJ_P0025834 H2afy2 protein_coding protein_coding MGP_C57BL6NJ_T0028094.1 MGP_C57BL6NJ_G0018340.1 mouse_genomes_project 10 138588733 138592455 - MGP_C57BL6NJ_P0028094 protein_coding protein_coding MGP_C57BL6NJ_T0025263.1 MGP_C57BL6NJ_G0017491.1 mouse_genomes_project 10 23320085 23398270 - MGP_C57BL6NJ_P0025263 Enpp1 protein_coding protein_coding MGP_C57BL6NJ_T0025264.1 MGP_C57BL6NJ_G0017491.1 mouse_genomes_project 10 23323606 23398271 - MGP_C57BL6NJ_P0025264 Enpp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025265.1 MGP_C57BL6NJ_G0017491.1 mouse_genomes_project 10 23323977 23398103 - MGP_C57BL6NJ_P0025265 Enpp1 protein_coding protein_coding MGP_C57BL6NJ_T0025266.1 MGP_C57BL6NJ_G0017491.1 mouse_genomes_project 10 23331416 23398109 - Enpp1 protein_coding retained_intron MGP_C57BL6NJ_T0025267.1 MGP_C57BL6NJ_G0017491.1 mouse_genomes_project 10 23353530 23359329 - Enpp1 protein_coding retained_intron MGP_C57BL6NJ_T0027083.1 MGP_C57BL6NJ_G0017991.1 mouse_genomes_project 10 88290645 88298229 - MGP_C57BL6NJ_P0027083 Ckap4 protein_coding protein_coding MGP_C57BL6NJ_T0027084.1 MGP_C57BL6NJ_G0017991.1 mouse_genomes_project 10 88290976 88298377 - MGP_C57BL6NJ_P0027084 Ckap4 protein_coding protein_coding MGP_C57BL6NJ_T0026456.1 MGP_C57BL6NJ_G0017835.1 mouse_genomes_project 10 82450816 82595060 + MGP_C57BL6NJ_P0026456 Vmn2r81 protein_coding protein_coding MGP_C57BL6NJ_T0026431.1 MGP_C57BL6NJ_G0017818.1 mouse_genomes_project 10 81657236 81659185 + MGP_C57BL6NJ_P0026431 Cstb protein_coding protein_coding MGP_C57BL6NJ_T0027547.1 MGP_C57BL6NJ_G0018124.1 mouse_genomes_project 10 118522685 118559279 + MGP_C57BL6NJ_P0027547 Glipr1l2 protein_coding protein_coding MGP_C57BL6NJ_T0027548.1 MGP_C57BL6NJ_G0018124.1 mouse_genomes_project 10 118522685 118560066 + MGP_C57BL6NJ_P0027548 Glipr1l2 protein_coding protein_coding MGP_C57BL6NJ_T0025753.1 MGP_C57BL6NJ_G0017661.1 mouse_genomes_project 10 61439891 61462994 + Spock2 protein_coding retained_intron MGP_C57BL6NJ_T0025754.1 MGP_C57BL6NJ_G0017661.1 mouse_genomes_project 10 61439891 61471668 + MGP_C57BL6NJ_P0025754 Spock2 protein_coding protein_coding MGP_C57BL6NJ_T0025755.1 MGP_C57BL6NJ_G0017661.1 mouse_genomes_project 10 61440140 61470378 + MGP_C57BL6NJ_P0025755 Spock2 protein_coding protein_coding MGP_C57BL6NJ_T0025889.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64144005 64179652 - MGP_C57BL6NJ_P0025889 Srgn protein_coding protein_coding MGP_C57BL6NJ_T0025890.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64144600 64160030 - MGP_C57BL6NJ_P0025890 Srgn protein_coding protein_coding MGP_C57BL6NJ_T0025891.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64144856 64160213 - MGP_C57BL6NJ_P0025891 Srgn protein_coding protein_coding MGP_C57BL6NJ_T0025892.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64148089 64179626 - MGP_C57BL6NJ_P0025892 Srgn protein_coding protein_coding MGP_C57BL6NJ_T0025893.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64159950 64160372 - MGP_C57BL6NJ_P0025893 Srgn protein_coding protein_coding MGP_C57BL6NJ_T0025894.1 MGP_C57BL6NJ_G0017696.1 mouse_genomes_project 10 64160016 64179626 - Srgn protein_coding processed_transcript MGP_C57BL6NJ_T0012722.1 MGP_C57BL6NJ_G0010767.1 mouse_genomes_project 10 78487231 78487655 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025819.1 MGP_C57BL6NJ_G0017678.1 mouse_genomes_project 10 63001135 63120977 + MGP_C57BL6NJ_P0025819 Lrrc20 protein_coding protein_coding MGP_C57BL6NJ_T0000946.1 MGP_C57BL6NJ_G0000857.1 mouse_genomes_project 10 36633742 36634089 + TEC TEC MGP_C57BL6NJ_T0100998.1 MGP_C57BL6NJ_G0039044.1 mouse_genomes_project 10 127976436 127976496 + Gm24298 snoRNA snoRNA MGP_C57BL6NJ_T0025329.1 MGP_C57BL6NJ_G0017509.1 mouse_genomes_project 10 28212566 28231638 + MGP_C57BL6NJ_P0025329 9330159F19Rik protein_coding protein_coding MGP_C57BL6NJ_T0028092.1 MGP_C57BL6NJ_G0018338.1 mouse_genomes_project 10 138542931 138543873 + MGP_C57BL6NJ_P0028092 Olfr822 protein_coding protein_coding MGP_C57BL6NJ_T0025111.1 MGP_C57BL6NJ_G0017431.1 mouse_genomes_project 10 15939173 15988494 - MGP_C57BL6NJ_P0025111 Heca protein_coding protein_coding MGP_C57BL6NJ_T0026283.1 MGP_C57BL6NJ_G0017782.1 mouse_genomes_project 10 79531804 79547998 + MGP_C57BL6NJ_P0026283 Ftcd protein_coding protein_coding MGP_C57BL6NJ_T0026284.1 MGP_C57BL6NJ_G0017782.1 mouse_genomes_project 10 79531808 79548775 + Ftcd protein_coding retained_intron MGP_C57BL6NJ_T0026285.1 MGP_C57BL6NJ_G0017782.1 mouse_genomes_project 10 79531862 79547749 + MGP_C57BL6NJ_P0026285 Ftcd protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026286.1 MGP_C57BL6NJ_G0017782.1 mouse_genomes_project 10 79545512 79547005 + Ftcd protein_coding processed_transcript MGP_C57BL6NJ_T0000956.1 MGP_C57BL6NJ_G0000866.1 mouse_genomes_project 10 103727617 103727981 - TEC TEC MGP_C57BL6NJ_T0026594.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83405560 83417218 + Gpx4 protein_coding processed_transcript MGP_C57BL6NJ_T0026595.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83412776 83417218 + MGP_C57BL6NJ_P0026595 Gpx4 protein_coding protein_coding MGP_C57BL6NJ_T0026596.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83413323 83415886 + Gpx4 protein_coding processed_transcript MGP_C57BL6NJ_T0026597.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83413325 83417218 + MGP_C57BL6NJ_P0026597 Gpx4 protein_coding protein_coding MGP_C57BL6NJ_T0026598.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83415243 83417173 + MGP_C57BL6NJ_P0026598 Gpx4 protein_coding protein_coding MGP_C57BL6NJ_T0026599.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83416672 83417144 + Gpx4 protein_coding retained_intron MGP_C57BL6NJ_T0026600.1 MGP_C57BL6NJ_G0017874.1 mouse_genomes_project 10 83416776 83417142 + Gpx4 protein_coding retained_intron MGP_C57BL6NJ_T0027373.1 MGP_C57BL6NJ_G0018061.1 mouse_genomes_project 10 98822287 98851552 + MGP_C57BL6NJ_P0027373 Ndufa12 protein_coding protein_coding MGP_C57BL6NJ_T0027374.1 MGP_C57BL6NJ_G0018061.1 mouse_genomes_project 10 98822291 98828569 + Ndufa12 protein_coding retained_intron MGP_C57BL6NJ_T0027375.1 MGP_C57BL6NJ_G0018061.1 mouse_genomes_project 10 98823285 98850888 + MGP_C57BL6NJ_P0027375 Ndufa12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025969.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69264548 69368786 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0025970.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69264828 69331146 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0025971.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69264915 69403796 + MGP_C57BL6NJ_P0025971 Jmjd1c protein_coding protein_coding MGP_C57BL6NJ_T0025972.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69298124 69437518 + MGP_C57BL6NJ_P0025972 Jmjd1c protein_coding protein_coding MGP_C57BL6NJ_T0025973.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69298124 69437519 + MGP_C57BL6NJ_P0025973 Jmjd1c protein_coding protein_coding MGP_C57BL6NJ_T0025974.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69362789 69393941 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0025975.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69362793 69368788 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0025976.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69395509 69396126 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0025977.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69416985 69433877 + MGP_C57BL6NJ_P0025977 Jmjd1c protein_coding protein_coding MGP_C57BL6NJ_T0025978.1 MGP_C57BL6NJ_G0017717.1 mouse_genomes_project 10 69417759 69424256 + Jmjd1c protein_coding retained_intron MGP_C57BL6NJ_T0102722.1 MGP_C57BL6NJ_G0040517.1 mouse_genomes_project 10 137761744 137762185 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099316.1 MGP_C57BL6NJ_G0037379.1 mouse_genomes_project 10 84022605 84024434 - Gm29093 sense_intronic sense_intronic MGP_C57BL6NJ_T0027281.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95323749 95427114 - MGP_C57BL6NJ_P0027281 Apaf1 protein_coding protein_coding MGP_C57BL6NJ_T0027282.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95323751 95326029 - Apaf1 protein_coding retained_intron MGP_C57BL6NJ_T0027283.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95323756 95427222 - MGP_C57BL6NJ_P0027283 Apaf1 protein_coding protein_coding MGP_C57BL6NJ_T0027284.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95325040 95427156 - MGP_C57BL6NJ_P0027284 Apaf1 protein_coding protein_coding MGP_C57BL6NJ_T0027285.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95331713 95336393 - Apaf1 protein_coding processed_transcript MGP_C57BL6NJ_T0027286.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95332721 95335701 - Apaf1 protein_coding retained_intron MGP_C57BL6NJ_T0027287.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95406890 95426881 - MGP_C57BL6NJ_P0027287 Apaf1 protein_coding protein_coding MGP_C57BL6NJ_T0027288.1 MGP_C57BL6NJ_G0018041.1 mouse_genomes_project 10 95408388 95427222 - MGP_C57BL6NJ_P0027288 Apaf1 protein_coding protein_coding MGP_C57BL6NJ_T0102715.1 MGP_C57BL6NJ_G0040510.1 mouse_genomes_project 10 81756305 81757243 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0028006.1 MGP_C57BL6NJ_G0018282.1 mouse_genomes_project 10 137182097 137185993 + MGP_C57BL6NJ_P0028006 Cd63 protein_coding protein_coding MGP_C57BL6NJ_T0028007.1 MGP_C57BL6NJ_G0018282.1 mouse_genomes_project 10 137183044 137185993 + MGP_C57BL6NJ_P0028007 Cd63 protein_coding protein_coding MGP_C57BL6NJ_T0025192.1 MGP_C57BL6NJ_G0017456.1 mouse_genomes_project 10 19397332 19435108 - MGP_C57BL6NJ_P0025192 Myb protein_coding protein_coding MGP_C57BL6NJ_T0025193.1 MGP_C57BL6NJ_G0017456.1 mouse_genomes_project 10 19397672 19435108 - MGP_C57BL6NJ_P0025193 Myb protein_coding protein_coding MGP_C57BL6NJ_T0025194.1 MGP_C57BL6NJ_G0017456.1 mouse_genomes_project 10 19412134 19435053 - Myb protein_coding retained_intron MGP_C57BL6NJ_T0017560.1 MGP_C57BL6NJ_G0015522.1 mouse_genomes_project 10 1433130 1447467 + Gm16153 processed_transcript processed_transcript MGP_C57BL6NJ_T0011545.1 MGP_C57BL6NJ_G0009630.1 mouse_genomes_project 10 115217006 115217284 - Gm22097 misc_RNA misc_RNA MGP_C57BL6NJ_T0025585.1 MGP_C57BL6NJ_G0017599.1 mouse_genomes_project 10 44422474 44527605 + MGP_C57BL6NJ_P0025585 Atg5 protein_coding protein_coding MGP_C57BL6NJ_T0011529.1 MGP_C57BL6NJ_G0009614.1 mouse_genomes_project 10 42450074 42450398 - Gm25277 misc_RNA misc_RNA MGP_C57BL6NJ_T0026763.1 MGP_C57BL6NJ_G0017908.1 mouse_genomes_project 10 84132471 84148967 - MGP_C57BL6NJ_P0026763 Mob3a protein_coding protein_coding MGP_C57BL6NJ_T0026767.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84210383 84252109 + MGP_C57BL6NJ_P0026767 Dot1l protein_coding protein_coding MGP_C57BL6NJ_T0026768.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84210385 84251035 + MGP_C57BL6NJ_P0026768 Dot1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026769.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84210640 84223304 + Dot1l protein_coding retained_intron MGP_C57BL6NJ_T0026770.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84234267 84251039 + MGP_C57BL6NJ_P0026770 Dot1l protein_coding protein_coding MGP_C57BL6NJ_T0026771.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84241874 84243132 + Dot1l protein_coding retained_intron MGP_C57BL6NJ_T0026772.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84245773 84250995 + MGP_C57BL6NJ_P0026772 Dot1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026773.1 MGP_C57BL6NJ_G0017911.1 mouse_genomes_project 10 84248101 84250466 + MGP_C57BL6NJ_P0026773 Dot1l protein_coding protein_coding MGP_C57BL6NJ_T0011531.1 MGP_C57BL6NJ_G0009616.1 mouse_genomes_project 10 64639093 64639376 + Gm22803 misc_RNA misc_RNA MGP_C57BL6NJ_T0025887.1 MGP_C57BL6NJ_G0017695.1 mouse_genomes_project 10 64102117 64136474 - MGP_C57BL6NJ_P0025887 Vps26a protein_coding protein_coding MGP_C57BL6NJ_T0025888.1 MGP_C57BL6NJ_G0017695.1 mouse_genomes_project 10 64102117 64136681 - MGP_C57BL6NJ_P0025888 Vps26a protein_coding protein_coding MGP_C57BL6NJ_T0012706.1 MGP_C57BL6NJ_G0010751.1 mouse_genomes_project 10 43419216 43419649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009841.1 MGP_C57BL6NJ_G0007926.1 mouse_genomes_project 10 137996549 137996659 - Gm23252 miRNA miRNA MGP_C57BL6NJ_T0028039.1 MGP_C57BL6NJ_G0018300.1 mouse_genomes_project 10 137706570 137712698 + MGP_C57BL6NJ_P0028039 Olfr781 protein_coding protein_coding MGP_C57BL6NJ_T0028040.1 MGP_C57BL6NJ_G0018300.1 mouse_genomes_project 10 137711762 137712698 + MGP_C57BL6NJ_P0028040 Olfr781 protein_coding protein_coding MGP_C57BL6NJ_T0025378.1 MGP_C57BL6NJ_G0017535.1 mouse_genomes_project 10 33417772 33475069 - MGP_C57BL6NJ_P0025378 Dse protein_coding protein_coding MGP_C57BL6NJ_T0099725.1 MGP_C57BL6NJ_G0037771.1 mouse_genomes_project 10 124757781 124757888 - Gm25709 snRNA snRNA MGP_C57BL6NJ_T0098804.1 MGP_C57BL6NJ_G0036868.1 mouse_genomes_project 10 134974333 134994029 + pseudogene pseudogene MGP_C57BL6NJ_T0027771.1 MGP_C57BL6NJ_G0018200.1 mouse_genomes_project 10 135084310 135100648 + MGP_C57BL6NJ_P0027771 Agap2 protein_coding protein_coding MGP_C57BL6NJ_T0028084.1 MGP_C57BL6NJ_G0018332.1 mouse_genomes_project 10 138374899 138375838 - MGP_C57BL6NJ_P0028084 Olfr816 protein_coding protein_coding MGP_C57BL6NJ_T0026571.1 MGP_C57BL6NJ_G0017868.1 mouse_genomes_project 10 83323962 83330434 + MGP_C57BL6NJ_P0026571 Grin3b protein_coding protein_coding MGP_C57BL6NJ_T0026572.1 MGP_C57BL6NJ_G0017868.1 mouse_genomes_project 10 83326980 83329959 + MGP_C57BL6NJ_P0026572 Grin3b protein_coding protein_coding MGP_C57BL6NJ_T0026573.1 MGP_C57BL6NJ_G0017868.1 mouse_genomes_project 10 83327652 83330368 + MGP_C57BL6NJ_P0026573 Grin3b protein_coding protein_coding MGP_C57BL6NJ_T0027983.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136868476 136883530 - MGP_C57BL6NJ_P0027983 Ikzf4 protein_coding protein_coding MGP_C57BL6NJ_T0027984.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136869998 136883414 - MGP_C57BL6NJ_P0027984 Ikzf4 protein_coding protein_coding MGP_C57BL6NJ_T0027985.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136870052 136883432 - MGP_C57BL6NJ_P0027985 Ikzf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027986.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136871297 136882236 - MGP_C57BL6NJ_P0027986 Ikzf4 protein_coding protein_coding MGP_C57BL6NJ_T0027987.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136877813 136883384 - MGP_C57BL6NJ_P0027987 Ikzf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027988.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136878729 136883378 - MGP_C57BL6NJ_P0027988 Ikzf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027989.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136878755 136883395 - MGP_C57BL6NJ_P0027989 Ikzf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027990.1 MGP_C57BL6NJ_G0018269.1 mouse_genomes_project 10 136882025 136883414 - Ikzf4 protein_coding processed_transcript MGP_C57BL6NJ_T0026225.1 MGP_C57BL6NJ_G0017760.1 mouse_genomes_project 10 78657013 78673090 - MGP_C57BL6NJ_P0026225 Gstt1 protein_coding protein_coding MGP_C57BL6NJ_T0026226.1 MGP_C57BL6NJ_G0017760.1 mouse_genomes_project 10 78657184 78670603 - MGP_C57BL6NJ_P0026226 Gstt1 protein_coding protein_coding MGP_C57BL6NJ_T0026227.1 MGP_C57BL6NJ_G0017760.1 mouse_genomes_project 10 78659995 78672237 - MGP_C57BL6NJ_P0026227 Gstt1 protein_coding protein_coding MGP_C57BL6NJ_T0003245.1 MGP_C57BL6NJ_G0003009.1 mouse_genomes_project 10 126679777 126705227 - Grip1os3 antisense antisense MGP_C57BL6NJ_T0003246.1 MGP_C57BL6NJ_G0003009.1 mouse_genomes_project 10 126689210 126705177 - Grip1os3 antisense antisense MGP_C57BL6NJ_T0003247.1 MGP_C57BL6NJ_G0003009.1 mouse_genomes_project 10 126689210 126705776 - Grip1os3 antisense antisense MGP_C57BL6NJ_T0025534.1 MGP_C57BL6NJ_G0017582.1 mouse_genomes_project 10 42250984 42432237 - MGP_C57BL6NJ_P0025534 Lace1 protein_coding protein_coding MGP_C57BL6NJ_T0025535.1 MGP_C57BL6NJ_G0017582.1 mouse_genomes_project 10 42250992 42432251 - MGP_C57BL6NJ_P0025535 Lace1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025536.1 MGP_C57BL6NJ_G0017582.1 mouse_genomes_project 10 42251986 42370893 - MGP_C57BL6NJ_P0025536 Lace1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026839.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84649287 84663879 - MGP_C57BL6NJ_P0026839 Pias4 protein_coding protein_coding MGP_C57BL6NJ_T0026840.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84650256 84652146 - Pias4 protein_coding retained_intron MGP_C57BL6NJ_T0026841.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84651523 84654033 - Pias4 protein_coding retained_intron MGP_C57BL6NJ_T0026842.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84651693 84663677 - MGP_C57BL6NJ_P0026842 Pias4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026843.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84651880 84653281 - MGP_C57BL6NJ_P0026843 Pias4 protein_coding protein_coding MGP_C57BL6NJ_T0026844.1 MGP_C57BL6NJ_G0017932.1 mouse_genomes_project 10 84659003 84663670 - Pias4 protein_coding retained_intron MGP_C57BL6NJ_T0027528.1 MGP_C57BL6NJ_G0018115.1 mouse_genomes_project 10 117213299 117234143 + MGP_C57BL6NJ_P0027528 Csrp2 protein_coding protein_coding MGP_C57BL6NJ_T0027017.1 MGP_C57BL6NJ_G0017974.1 mouse_genomes_project 10 86016689 86019024 + MGP_C57BL6NJ_P0027017 protein_coding protein_coding MGP_C57BL6NJ_T0099673.1 MGP_C57BL6NJ_G0037719.1 mouse_genomes_project 10 15106234 15106331 + Gm25382 snRNA snRNA MGP_C57BL6NJ_T0025519.1 MGP_C57BL6NJ_G0017579.1 mouse_genomes_project 10 41706016 41809350 + MGP_C57BL6NJ_P0025519 Sesn1 protein_coding protein_coding MGP_C57BL6NJ_T0025520.1 MGP_C57BL6NJ_G0017579.1 mouse_genomes_project 10 41782428 41809350 + MGP_C57BL6NJ_P0025520 Sesn1 protein_coding protein_coding MGP_C57BL6NJ_T0027221.1 MGP_C57BL6NJ_G0018032.1 mouse_genomes_project 10 93020815 93064504 + MGP_C57BL6NJ_P0027221 Slc5a8 protein_coding protein_coding MGP_C57BL6NJ_T0100971.1 MGP_C57BL6NJ_G0039017.1 mouse_genomes_project 10 60443661 60443788 + Gm23223 snoRNA snoRNA MGP_C57BL6NJ_T0003241.1 MGP_C57BL6NJ_G0003007.1 mouse_genomes_project 10 123336592 123339778 + Kcnmb4os1 antisense antisense MGP_C57BL6NJ_T0025010.1 MGP_C57BL6NJ_G0017408.1 mouse_genomes_project 10 8213135 8213646 + MGP_C57BL6NJ_P0025010 Gm10944 protein_coding protein_coding MGP_C57BL6NJ_T0027214.1 MGP_C57BL6NJ_G0018029.1 mouse_genomes_project 10 92794096 92802953 - MGP_C57BL6NJ_P0027214 Spic protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027215.1 MGP_C57BL6NJ_G0018029.1 mouse_genomes_project 10 92794714 92805823 - MGP_C57BL6NJ_P0027215 Spic protein_coding protein_coding MGP_C57BL6NJ_T0027216.1 MGP_C57BL6NJ_G0018029.1 mouse_genomes_project 10 92797650 92802953 - Spic protein_coding retained_intron MGP_C57BL6NJ_T0025248.1 MGP_C57BL6NJ_G0017479.1 mouse_genomes_project 10 22584913 22585951 - MGP_C57BL6NJ_P0025248 Taar6 protein_coding protein_coding MGP_C57BL6NJ_T0026734.1 MGP_C57BL6NJ_G0017899.1 mouse_genomes_project 10 83940723 83968279 - MGP_C57BL6NJ_P0026734 Atp8b3 protein_coding protein_coding MGP_C57BL6NJ_T0026458.1 MGP_C57BL6NJ_G0017837.1 mouse_genomes_project 10 82762693 82785865 + MGP_C57BL6NJ_P0026458 Vmn2r83 protein_coding protein_coding MGP_C57BL6NJ_T0026704.1 MGP_C57BL6NJ_G0017893.1 mouse_genomes_project 10 83762204 83770983 + MGP_C57BL6NJ_P0026704 Plk5 protein_coding protein_coding MGP_C57BL6NJ_T0026705.1 MGP_C57BL6NJ_G0017893.1 mouse_genomes_project 10 83762204 83770983 + MGP_C57BL6NJ_P0026705 Plk5 protein_coding protein_coding MGP_C57BL6NJ_T0026706.1 MGP_C57BL6NJ_G0017893.1 mouse_genomes_project 10 83763722 83766273 + Plk5 protein_coding retained_intron MGP_C57BL6NJ_T0026707.1 MGP_C57BL6NJ_G0017893.1 mouse_genomes_project 10 83765015 83766531 + Plk5 protein_coding retained_intron MGP_C57BL6NJ_T0026565.1 MGP_C57BL6NJ_G0017866.1 mouse_genomes_project 10 83271359 83303220 + MGP_C57BL6NJ_P0026565 Arid3a protein_coding protein_coding MGP_C57BL6NJ_T0026566.1 MGP_C57BL6NJ_G0017866.1 mouse_genomes_project 10 83271455 83302913 + MGP_C57BL6NJ_P0026566 Arid3a protein_coding protein_coding MGP_C57BL6NJ_T0026567.1 MGP_C57BL6NJ_G0017866.1 mouse_genomes_project 10 83271657 83302905 + MGP_C57BL6NJ_P0026567 Arid3a protein_coding protein_coding MGP_C57BL6NJ_T0026568.1 MGP_C57BL6NJ_G0017866.1 mouse_genomes_project 10 83277085 83277880 + MGP_C57BL6NJ_P0026568 Arid3a protein_coding protein_coding MGP_C57BL6NJ_T0026569.1 MGP_C57BL6NJ_G0017866.1 mouse_genomes_project 10 83294653 83300845 + Arid3a protein_coding processed_transcript MGP_C57BL6NJ_T0026794.1 MGP_C57BL6NJ_G0017919.1 mouse_genomes_project 10 84315770 84331454 + MGP_C57BL6NJ_P0026794 Sppl2b protein_coding protein_coding MGP_C57BL6NJ_T0098797.1 MGP_C57BL6NJ_G0036861.1 mouse_genomes_project 10 60471843 60476322 + pseudogene pseudogene MGP_C57BL6NJ_T0099679.1 MGP_C57BL6NJ_G0037725.1 mouse_genomes_project 10 30276237 30276344 - Gm23790 snRNA snRNA MGP_C57BL6NJ_T0003256.1 MGP_C57BL6NJ_G0003017.1 mouse_genomes_project 10 135737449 135739095 + Gm16229 antisense antisense MGP_C57BL6NJ_T0025330.1 MGP_C57BL6NJ_G0017510.1 mouse_genomes_project 10 28317842 28357688 + MGP_C57BL6NJ_P0025330 Echdc1 protein_coding protein_coding MGP_C57BL6NJ_T0025331.1 MGP_C57BL6NJ_G0017510.1 mouse_genomes_project 10 28317957 28356472 + MGP_C57BL6NJ_P0025331 Echdc1 protein_coding protein_coding MGP_C57BL6NJ_T0025332.1 MGP_C57BL6NJ_G0017510.1 mouse_genomes_project 10 28318176 28358789 + MGP_C57BL6NJ_P0025332 Echdc1 protein_coding protein_coding MGP_C57BL6NJ_T0025333.1 MGP_C57BL6NJ_G0017510.1 mouse_genomes_project 10 28318339 28345279 + Echdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0100962.1 MGP_C57BL6NJ_G0039008.1 mouse_genomes_project 10 39843038 39843167 + Gm25613 snoRNA snoRNA MGP_C57BL6NJ_T0028057.1 MGP_C57BL6NJ_G0018314.1 mouse_genomes_project 10 138066495 138067431 + MGP_C57BL6NJ_P0028057 Olfr800 protein_coding protein_coding MGP_C57BL6NJ_T0009793.1 MGP_C57BL6NJ_G0007878.1 mouse_genomes_project 10 83679997 83680066 + Mir6911 miRNA miRNA MGP_C57BL6NJ_T0025723.1 MGP_C57BL6NJ_G0017654.1 mouse_genomes_project 10 60715808 60889651 - MGP_C57BL6NJ_P0025723 Mcu protein_coding protein_coding MGP_C57BL6NJ_T0025724.1 MGP_C57BL6NJ_G0017654.1 mouse_genomes_project 10 60717421 60726975 - MGP_C57BL6NJ_P0025724 Mcu protein_coding protein_coding MGP_C57BL6NJ_T0025725.1 MGP_C57BL6NJ_G0017654.1 mouse_genomes_project 10 60804280 60889634 - MGP_C57BL6NJ_P0025725 Mcu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025726.1 MGP_C57BL6NJ_G0017654.1 mouse_genomes_project 10 60875123 60889638 - Mcu protein_coding processed_transcript MGP_C57BL6NJ_T0025727.1 MGP_C57BL6NJ_G0017654.1 mouse_genomes_project 10 60875887 60889614 - Mcu protein_coding processed_transcript MGP_C57BL6NJ_T0100967.1 MGP_C57BL6NJ_G0039013.1 mouse_genomes_project 10 47027539 47027670 - Gm23481 snoRNA snoRNA MGP_C57BL6NJ_T0025540.1 MGP_C57BL6NJ_G0017584.1 mouse_genomes_project 10 42531361 42536899 - MGP_C57BL6NJ_P0025540 Nr2e1 protein_coding protein_coding MGP_C57BL6NJ_T0025541.1 MGP_C57BL6NJ_G0017584.1 mouse_genomes_project 10 42531453 42554071 - MGP_C57BL6NJ_P0025541 Nr2e1 protein_coding protein_coding MGP_C57BL6NJ_T0025542.1 MGP_C57BL6NJ_G0017584.1 mouse_genomes_project 10 42539554 42549586 - MGP_C57BL6NJ_P0025542 Nr2e1 protein_coding protein_coding MGP_C57BL6NJ_T0027971.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781255 136782446 - MGP_C57BL6NJ_P0027971 protein_coding protein_coding MGP_C57BL6NJ_T0027972.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781255 136782294 - MGP_C57BL6NJ_P0027972 protein_coding protein_coding MGP_C57BL6NJ_T0027973.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781255 136782303 - MGP_C57BL6NJ_P0027973 protein_coding protein_coding MGP_C57BL6NJ_T0027974.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781258 136782279 - protein_coding retained_intron MGP_C57BL6NJ_T0027975.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781261 136782243 - MGP_C57BL6NJ_P0027975 protein_coding protein_coding MGP_C57BL6NJ_T0027976.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781262 136782300 - protein_coding retained_intron MGP_C57BL6NJ_T0027977.1 MGP_C57BL6NJ_G0018265.1 mouse_genomes_project 10 136781616 136782253 - protein_coding retained_intron MGP_C57BL6NJ_T0025147.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17737925 17756192 + MGP_C57BL6NJ_P0025147 Ifngr1 protein_coding protein_coding MGP_C57BL6NJ_T0025148.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17737934 17743828 + Ifngr1 protein_coding retained_intron MGP_C57BL6NJ_T0025149.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17738007 17749717 + MGP_C57BL6NJ_P0025149 Ifngr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025150.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17738029 17747370 + MGP_C57BL6NJ_P0025150 Ifngr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025151.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17738038 17749737 + MGP_C57BL6NJ_P0025151 Ifngr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025152.1 MGP_C57BL6NJ_G0017443.1 mouse_genomes_project 10 17751881 17755219 + Ifngr1 protein_coding retained_intron MGP_C57BL6NJ_T0012057.1 MGP_C57BL6NJ_G0010140.1 mouse_genomes_project 10 138120163 138120499 + MGP_C57BL6NJ_P0012057 Olfr779 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0025245.1 MGP_C57BL6NJ_G0017476.1 mouse_genomes_project 10 22540920 22541952 + MGP_C57BL6NJ_P0025245 Taar3 protein_coding protein_coding MGP_C57BL6NJ_T0027697.1 MGP_C57BL6NJ_G0018174.1 mouse_genomes_project 10 128751847 128801399 - MGP_C57BL6NJ_P0027697 Tbc1d30 protein_coding protein_coding MGP_C57BL6NJ_T0027198.1 MGP_C57BL6NJ_G0018027.1 mouse_genomes_project 10 92559736 92574689 + MGP_C57BL6NJ_P0027198 Sycp3 protein_coding protein_coding MGP_C57BL6NJ_T0027199.1 MGP_C57BL6NJ_G0018027.1 mouse_genomes_project 10 92559831 92574690 + MGP_C57BL6NJ_P0027199 Sycp3 protein_coding protein_coding MGP_C57BL6NJ_T0027200.1 MGP_C57BL6NJ_G0018027.1 mouse_genomes_project 10 92559831 92574690 + MGP_C57BL6NJ_P0027200 Sycp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099721.1 MGP_C57BL6NJ_G0037767.1 mouse_genomes_project 10 117196755 117196861 - Gm22236 snRNA snRNA MGP_C57BL6NJ_T0027475.1 MGP_C57BL6NJ_G0018098.1 mouse_genomes_project 10 108757775 108951191 - MGP_C57BL6NJ_P0027475 Lrriq1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027476.1 MGP_C57BL6NJ_G0018098.1 mouse_genomes_project 10 108776019 108953360 - MGP_C57BL6NJ_P0027476 Lrriq1 protein_coding protein_coding MGP_C57BL6NJ_T0027477.1 MGP_C57BL6NJ_G0018098.1 mouse_genomes_project 10 108929297 108953360 - MGP_C57BL6NJ_P0027477 Lrriq1 protein_coding protein_coding MGP_C57BL6NJ_T0027478.1 MGP_C57BL6NJ_G0018098.1 mouse_genomes_project 10 108930227 108953331 - MGP_C57BL6NJ_P0027478 Lrriq1 protein_coding protein_coding MGP_C57BL6NJ_T0025168.1 MGP_C57BL6NJ_G0017450.1 mouse_genomes_project 10 18331994 18472933 + MGP_C57BL6NJ_P0025168 Map7 protein_coding protein_coding MGP_C57BL6NJ_T0025169.1 MGP_C57BL6NJ_G0017450.1 mouse_genomes_project 10 18332443 18475823 + MGP_C57BL6NJ_P0025169 Map7 protein_coding protein_coding MGP_C57BL6NJ_T0025170.1 MGP_C57BL6NJ_G0017450.1 mouse_genomes_project 10 18356884 18450322 + MGP_C57BL6NJ_P0025170 Map7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026719.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816121 83840252 - MGP_C57BL6NJ_P0026719 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026720.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816121 83840280 - MGP_C57BL6NJ_P0026720 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026721.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816154 83840258 - MGP_C57BL6NJ_P0026721 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026722.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816154 83840280 - MGP_C57BL6NJ_P0026722 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026723.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816215 83840236 - MGP_C57BL6NJ_P0026723 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026724.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816215 83840236 - MGP_C57BL6NJ_P0026724 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026725.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816227 83837626 - MGP_C57BL6NJ_P0026725 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026726.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816233 83840250 - MGP_C57BL6NJ_P0026726 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026727.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816233 83840250 - MGP_C57BL6NJ_P0026727 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026728.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816661 83837599 - MGP_C57BL6NJ_P0026728 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026729.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83816661 83837696 - MGP_C57BL6NJ_P0026729 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0026730.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83819234 83822095 - Tcf3 protein_coding processed_transcript MGP_C57BL6NJ_T0026731.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83821850 83822896 - Tcf3 protein_coding retained_intron MGP_C57BL6NJ_T0026732.1 MGP_C57BL6NJ_G0017897.1 mouse_genomes_project 10 83826690 83828468 - MGP_C57BL6NJ_P0026732 Tcf3 protein_coding protein_coding MGP_C57BL6NJ_T0025241.1 MGP_C57BL6NJ_G0017472.1 mouse_genomes_project 10 22429938 22442665 + MGP_C57BL6NJ_P0025241 Vnn3 protein_coding protein_coding MGP_C57BL6NJ_T0003232.1 MGP_C57BL6NJ_G0003001.1 mouse_genomes_project 10 98251119 98260224 - Gm15915 antisense antisense MGP_C57BL6NJ_T0025377.1 MGP_C57BL6NJ_G0017534.1 mouse_genomes_project 10 33386299 33388203 - MGP_C57BL6NJ_P0025377 Fam26f protein_coding protein_coding MGP_C57BL6NJ_T0099699.1 MGP_C57BL6NJ_G0037745.1 mouse_genomes_project 10 78481418 78481531 - Gm26402 snRNA snRNA MGP_C57BL6NJ_T0025442.1 MGP_C57BL6NJ_G0017554.1 mouse_genomes_project 10 39660059 39676635 - MGP_C57BL6NJ_P0025442 Mfsd4b3 protein_coding protein_coding MGP_C57BL6NJ_T0009769.1 MGP_C57BL6NJ_G0007854.1 mouse_genomes_project 10 44522989 44523082 + Mir1929 miRNA miRNA MGP_C57BL6NJ_T0099684.1 MGP_C57BL6NJ_G0037730.1 mouse_genomes_project 10 44916267 44916382 + Gm22503 snRNA snRNA MGP_C57BL6NJ_T0027992.1 MGP_C57BL6NJ_G0018271.1 mouse_genomes_project 10 136919233 136938656 - MGP_C57BL6NJ_P0027992 protein_coding protein_coding MGP_C57BL6NJ_T0027737.1 MGP_C57BL6NJ_G0018189.1 mouse_genomes_project 10 133857362 133910146 + MGP_C57BL6NJ_P0027737 Lrig3 protein_coding protein_coding MGP_C57BL6NJ_T0025279.1 MGP_C57BL6NJ_G0017494.1 mouse_genomes_project 10 23618172 23632185 - MGP_C57BL6NJ_P0025279 Arg1 protein_coding protein_coding MGP_C57BL6NJ_T0025253.1 MGP_C57BL6NJ_G0017484.1 mouse_genomes_project 10 22674788 22678042 + MGP_C57BL6NJ_P0025253 Taar7f protein_coding protein_coding MGP_C57BL6NJ_T0009795.1 MGP_C57BL6NJ_G0007880.1 mouse_genomes_project 10 84044191 84044261 + Mir6912 miRNA miRNA MGP_C57BL6NJ_T0027561.1 MGP_C57BL6NJ_G0018133.1 mouse_genomes_project 10 122180213 122195686 - MGP_C57BL6NJ_P0027561 Thap2 protein_coding protein_coding MGP_C57BL6NJ_T0025617.1 MGP_C57BL6NJ_G0017611.1 mouse_genomes_project 10 52204712 52215796 + MGP_C57BL6NJ_P0025617 protein_coding protein_coding MGP_C57BL6NJ_T0025618.1 MGP_C57BL6NJ_G0017611.1 mouse_genomes_project 10 52204758 52214820 + protein_coding processed_transcript MGP_C57BL6NJ_T0027289.1 MGP_C57BL6NJ_G0018042.1 mouse_genomes_project 10 95427391 95448514 + MGP_C57BL6NJ_P0027289 Ikbip protein_coding protein_coding MGP_C57BL6NJ_T0027290.1 MGP_C57BL6NJ_G0018042.1 mouse_genomes_project 10 95427508 95444529 + MGP_C57BL6NJ_P0027290 Ikbip protein_coding protein_coding MGP_C57BL6NJ_T0027291.1 MGP_C57BL6NJ_G0018042.1 mouse_genomes_project 10 95427557 95438182 + Ikbip protein_coding processed_transcript MGP_C57BL6NJ_T0027292.1 MGP_C57BL6NJ_G0018042.1 mouse_genomes_project 10 95427571 95438765 + Ikbip protein_coding retained_intron MGP_C57BL6NJ_T0027293.1 MGP_C57BL6NJ_G0018042.1 mouse_genomes_project 10 95441846 95448002 + Ikbip protein_coding processed_transcript MGP_C57BL6NJ_T0025919.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64669345 64699079 + MGP_C57BL6NJ_P0025919 Dna2 protein_coding protein_coding MGP_C57BL6NJ_T0025920.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64669394 64698661 + MGP_C57BL6NJ_P0025920 Dna2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025921.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64669399 64671985 + Dna2 protein_coding retained_intron MGP_C57BL6NJ_T0025922.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64669412 64696950 + MGP_C57BL6NJ_P0025922 Dna2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025923.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64669429 64688995 + Dna2 protein_coding retained_intron MGP_C57BL6NJ_T0025924.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64688540 64699078 + Dna2 protein_coding retained_intron MGP_C57BL6NJ_T0025925.1 MGP_C57BL6NJ_G0017704.1 mouse_genomes_project 10 64688835 64699073 + Dna2 protein_coding retained_intron MGP_C57BL6NJ_T0003158.1 MGP_C57BL6NJ_G0002944.1 mouse_genomes_project 10 11899514 11904238 - Gm28289 antisense antisense MGP_C57BL6NJ_T0009810.1 MGP_C57BL6NJ_G0007895.1 mouse_genomes_project 10 97954051 97954107 + Mir7688 miRNA miRNA MGP_C57BL6NJ_T0025235.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22362147 22397131 + MGP_C57BL6NJ_P0025235 Slc18b1 protein_coding protein_coding MGP_C57BL6NJ_T0025236.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22362147 22397131 + MGP_C57BL6NJ_P0025236 Slc18b1 protein_coding protein_coding MGP_C57BL6NJ_T0025237.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22362213 22370934 + MGP_C57BL6NJ_P0025237 Slc18b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025238.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22362361 22370886 + MGP_C57BL6NJ_P0025238 Slc18b1 protein_coding protein_coding MGP_C57BL6NJ_T0025239.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22370950 22388144 + MGP_C57BL6NJ_P0025239 Slc18b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025240.1 MGP_C57BL6NJ_G0017471.1 mouse_genomes_project 10 22393599 22396186 + Slc18b1 protein_coding retained_intron MGP_C57BL6NJ_T0027808.1 MGP_C57BL6NJ_G0018215.1 mouse_genomes_project 10 135387630 135412042 - MGP_C57BL6NJ_P0027808 Inhbc protein_coding protein_coding MGP_C57BL6NJ_T0027941.1 MGP_C57BL6NJ_G0018254.1 mouse_genomes_project 10 136543301 136570710 + MGP_C57BL6NJ_P0027941 Cs protein_coding protein_coding MGP_C57BL6NJ_T0099318.1 MGP_C57BL6NJ_G0037381.1 mouse_genomes_project 10 128208103 128209261 - Gm15961 sense_intronic sense_intronic MGP_C57BL6NJ_T0026968.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145143 85151829 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026969.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145143 85156858 - MGP_C57BL6NJ_P0026969 Tle6 protein_coding protein_coding MGP_C57BL6NJ_T0026970.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145144 85149655 - Tle6 protein_coding retained_intron MGP_C57BL6NJ_T0026971.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145144 85146955 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026972.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145144 85156883 - MGP_C57BL6NJ_P0026972 Tle6 protein_coding protein_coding MGP_C57BL6NJ_T0026973.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145146 85151584 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026974.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85145372 85147058 - Tle6 protein_coding retained_intron MGP_C57BL6NJ_T0026975.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85148158 85149484 - Tle6 protein_coding retained_intron MGP_C57BL6NJ_T0026976.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85148478 85150048 - Tle6 protein_coding retained_intron MGP_C57BL6NJ_T0026977.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85149448 85151577 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026978.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85149468 85151570 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026979.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85150192 85151606 - Tle6 protein_coding processed_transcript MGP_C57BL6NJ_T0026980.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85150232 85156840 - MGP_C57BL6NJ_P0026980 Tle6 protein_coding protein_coding MGP_C57BL6NJ_T0026981.1 MGP_C57BL6NJ_G0017961.1 mouse_genomes_project 10 85150235 85157056 - MGP_C57BL6NJ_P0026981 Tle6 protein_coding protein_coding MGP_C57BL6NJ_T0025564.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43252489 43455110 + MGP_C57BL6NJ_P0025564 Pdss2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025565.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43252489 43490667 + MGP_C57BL6NJ_P0025565 Pdss2 protein_coding protein_coding MGP_C57BL6NJ_T0025566.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43252520 43390871 + Pdss2 protein_coding retained_intron MGP_C57BL6NJ_T0025567.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43252603 43517987 + MGP_C57BL6NJ_P0025567 Pdss2 protein_coding protein_coding MGP_C57BL6NJ_T0025568.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43252739 43390468 + Pdss2 protein_coding retained_intron MGP_C57BL6NJ_T0025569.1 MGP_C57BL6NJ_G0017590.1 mouse_genomes_project 10 43440341 43490313 + MGP_C57BL6NJ_P0025569 Pdss2 protein_coding protein_coding MGP_C57BL6NJ_T0026612.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83498261 83505198 - MGP_C57BL6NJ_P0026612 Cbarp protein_coding protein_coding MGP_C57BL6NJ_T0026613.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83498261 83505198 - MGP_C57BL6NJ_P0026613 Cbarp protein_coding protein_coding MGP_C57BL6NJ_T0026614.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83498291 83507178 - MGP_C57BL6NJ_P0026614 Cbarp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026615.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83498361 83507209 - MGP_C57BL6NJ_P0026615 Cbarp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026616.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83498361 83507209 - MGP_C57BL6NJ_P0026616 Cbarp protein_coding protein_coding MGP_C57BL6NJ_T0026617.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83500346 83502492 - Cbarp protein_coding retained_intron MGP_C57BL6NJ_T0026618.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83500884 83503399 - Cbarp protein_coding retained_intron MGP_C57BL6NJ_T0026619.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83502928 83507207 - MGP_C57BL6NJ_P0026619 Cbarp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026620.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83502968 83507022 - MGP_C57BL6NJ_P0026620 Cbarp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026621.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83503326 83505750 - Cbarp protein_coding processed_transcript MGP_C57BL6NJ_T0026622.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83504455 83505737 - Cbarp protein_coding processed_transcript MGP_C57BL6NJ_T0026623.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83504473 83505163 - Cbarp protein_coding processed_transcript MGP_C57BL6NJ_T0026624.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83504518 83505473 - Cbarp protein_coding retained_intron MGP_C57BL6NJ_T0026625.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83504684 83505405 - Cbarp protein_coding retained_intron MGP_C57BL6NJ_T0026626.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83505157 83506460 - Cbarp protein_coding processed_transcript MGP_C57BL6NJ_T0026627.1 MGP_C57BL6NJ_G0017877.1 mouse_genomes_project 10 83505157 83508681 - MGP_C57BL6NJ_P0026627 Cbarp protein_coding protein_coding MGP_C57BL6NJ_T0026094.1 MGP_C57BL6NJ_G0017738.1 mouse_genomes_project 10 73774643 73804947 - MGP_C57BL6NJ_P0026094 Ube2d1 protein_coding protein_coding MGP_C57BL6NJ_T0026095.1 MGP_C57BL6NJ_G0017738.1 mouse_genomes_project 10 73775322 73776577 - Ube2d1 protein_coding retained_intron MGP_C57BL6NJ_T0026096.1 MGP_C57BL6NJ_G0017738.1 mouse_genomes_project 10 73777393 73804903 - Ube2d1 protein_coding retained_intron MGP_C57BL6NJ_T0006259.1 MGP_C57BL6NJ_G0005236.1 mouse_genomes_project 10 65062768 65066270 - Gm26789 lincRNA lincRNA MGP_C57BL6NJ_T0028034.1 MGP_C57BL6NJ_G0018296.1 mouse_genomes_project 10 137606700 137621700 + MGP_C57BL6NJ_P0028034 protein_coding protein_coding MGP_C57BL6NJ_T0025250.1 MGP_C57BL6NJ_G0017481.1 mouse_genomes_project 10 22601579 22604317 + MGP_C57BL6NJ_P0025250 Taar7b protein_coding protein_coding MGP_C57BL6NJ_T0006247.1 MGP_C57BL6NJ_G0005224.1 mouse_genomes_project 10 23113691 23118859 + Gm15271 lincRNA lincRNA MGP_C57BL6NJ_T0102716.1 MGP_C57BL6NJ_G0040511.1 mouse_genomes_project 10 100575734 100576673 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026072.1 MGP_C57BL6NJ_G0017732.1 mouse_genomes_project 10 72702278 72745008 + MGP_C57BL6NJ_P0026072 Slc16a9 protein_coding protein_coding MGP_C57BL6NJ_T0026073.1 MGP_C57BL6NJ_G0017732.1 mouse_genomes_project 10 72725986 72743120 + Slc16a9 protein_coding retained_intron MGP_C57BL6NJ_T0027504.1 MGP_C57BL6NJ_G0018110.1 mouse_genomes_project 10 114246021 114360752 + MGP_C57BL6NJ_P0027504 Ppp1r12a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027505.1 MGP_C57BL6NJ_G0018110.1 mouse_genomes_project 10 114246021 114361034 + MGP_C57BL6NJ_P0027505 Ppp1r12a protein_coding protein_coding MGP_C57BL6NJ_T0027337.1 MGP_C57BL6NJ_G0018055.1 mouse_genomes_project 10 98207798 98212078 + MGP_C57BL6NJ_P0027337 protein_coding protein_coding MGP_C57BL6NJ_T0027338.1 MGP_C57BL6NJ_G0018055.1 mouse_genomes_project 10 98208571 98331500 + MGP_C57BL6NJ_P0027338 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027403.1 MGP_C57BL6NJ_G0018068.1 mouse_genomes_project 10 100180528 100182965 - MGP_C57BL6NJ_P0027403 Gm9847 protein_coding protein_coding MGP_C57BL6NJ_T0006279.1 MGP_C57BL6NJ_G0005250.1 mouse_genomes_project 10 86491723 86507345 + 1700028I16Rik lincRNA lincRNA MGP_C57BL6NJ_T0026317.1 MGP_C57BL6NJ_G0017789.1 mouse_genomes_project 10 80284269 80285717 - MGP_C57BL6NJ_P0026317 Gm10941 protein_coding protein_coding MGP_C57BL6NJ_T0099690.1 MGP_C57BL6NJ_G0037736.1 mouse_genomes_project 10 53706398 53706505 + Gm25664 snRNA snRNA MGP_C57BL6NJ_T0027868.1 MGP_C57BL6NJ_G0018228.1 mouse_genomes_project 10 135826089 135830544 - MGP_C57BL6NJ_P0027868 Gpr182 protein_coding protein_coding MGP_C57BL6NJ_T0027584.1 MGP_C57BL6NJ_G0018141.1 mouse_genomes_project 10 123336401 123397224 - MGP_C57BL6NJ_P0027584 Kcnmb4 protein_coding protein_coding MGP_C57BL6NJ_T0027585.1 MGP_C57BL6NJ_G0018141.1 mouse_genomes_project 10 123357847 123396781 - MGP_C57BL6NJ_P0027585 Kcnmb4 protein_coding protein_coding MGP_C57BL6NJ_T0027586.1 MGP_C57BL6NJ_G0018141.1 mouse_genomes_project 10 123385316 123396768 - MGP_C57BL6NJ_P0027586 Kcnmb4 protein_coding protein_coding MGP_C57BL6NJ_T0025706.1 MGP_C57BL6NJ_G0017645.1 mouse_genomes_project 10 59818119 59898334 - MGP_C57BL6NJ_P0025706 Edar protein_coding protein_coding MGP_C57BL6NJ_T0026692.1 MGP_C57BL6NJ_G0017891.1 mouse_genomes_project 10 83733775 83740265 + MGP_C57BL6NJ_P0026692 Reep6 protein_coding protein_coding MGP_C57BL6NJ_T0026693.1 MGP_C57BL6NJ_G0017891.1 mouse_genomes_project 10 83733775 83740265 + MGP_C57BL6NJ_P0026693 Reep6 protein_coding protein_coding MGP_C57BL6NJ_T0026694.1 MGP_C57BL6NJ_G0017891.1 mouse_genomes_project 10 83733967 83740264 + MGP_C57BL6NJ_P0026694 Reep6 protein_coding protein_coding MGP_C57BL6NJ_T0026695.1 MGP_C57BL6NJ_G0017891.1 mouse_genomes_project 10 83734020 83738256 + Reep6 protein_coding retained_intron MGP_C57BL6NJ_T0026696.1 MGP_C57BL6NJ_G0017891.1 mouse_genomes_project 10 83734024 83739406 + MGP_C57BL6NJ_P0026696 Reep6 protein_coding protein_coding MGP_C57BL6NJ_T0025594.1 MGP_C57BL6NJ_G0017604.1 mouse_genomes_project 10 45627971 45733558 - MGP_C57BL6NJ_P0025594 Lin28b protein_coding protein_coding MGP_C57BL6NJ_T0025595.1 MGP_C57BL6NJ_G0017604.1 mouse_genomes_project 10 45632416 45732816 - MGP_C57BL6NJ_P0025595 Lin28b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025626.1 MGP_C57BL6NJ_G0017616.1 mouse_genomes_project 10 52776629 52782599 + MGP_C57BL6NJ_P0025626 Vgll2 protein_coding protein_coding MGP_C57BL6NJ_T0025627.1 MGP_C57BL6NJ_G0017616.1 mouse_genomes_project 10 52776655 52782471 + MGP_C57BL6NJ_P0025627 Vgll2 protein_coding protein_coding MGP_C57BL6NJ_T0025257.1 MGP_C57BL6NJ_G0017488.1 mouse_genomes_project 10 22794910 22836639 + MGP_C57BL6NJ_P0025257 Stx7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026885.1 MGP_C57BL6NJ_G0017944.1 mouse_genomes_project 10 84847106 84852255 + MGP_C57BL6NJ_P0026885 Cactin protein_coding protein_coding MGP_C57BL6NJ_T0099682.1 MGP_C57BL6NJ_G0037728.1 mouse_genomes_project 10 41250754 41250861 + Gm25626 snRNA snRNA MGP_C57BL6NJ_T0025620.1 MGP_C57BL6NJ_G0017612.1 mouse_genomes_project 10 52323040 52328101 - MGP_C57BL6NJ_P0025620 Fam162b protein_coding protein_coding MGP_C57BL6NJ_T0024947.1 MGP_C57BL6NJ_G0017391.1 mouse_genomes_project 10 4423393 4440013 - MGP_C57BL6NJ_P0024947 Cnksr3 protein_coding protein_coding MGP_C57BL6NJ_T0024948.1 MGP_C57BL6NJ_G0017391.1 mouse_genomes_project 10 4423393 4530214 - MGP_C57BL6NJ_P0024948 Cnksr3 protein_coding protein_coding MGP_C57BL6NJ_T0025146.1 MGP_C57BL6NJ_G0017442.1 mouse_genomes_project 10 17498825 17500872 + MGP_C57BL6NJ_P0025146 Olig3 protein_coding protein_coding MGP_C57BL6NJ_T0027997.1 MGP_C57BL6NJ_G0018275.1 mouse_genomes_project 10 137004366 137024258 + MGP_C57BL6NJ_P0027997 Pym1 protein_coding protein_coding MGP_C57BL6NJ_T0025140.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17118764 17134473 - MGP_C57BL6NJ_P0025140 Tnfaip3 protein_coding protein_coding MGP_C57BL6NJ_T0025141.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17118767 17131026 - MGP_C57BL6NJ_P0025141 Tnfaip3 protein_coding protein_coding MGP_C57BL6NJ_T0025142.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17118783 17134439 - Tnfaip3 protein_coding retained_intron MGP_C57BL6NJ_T0025143.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17125121 17126700 - Tnfaip3 protein_coding retained_intron MGP_C57BL6NJ_T0025144.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17126120 17134720 - MGP_C57BL6NJ_P0025144 Tnfaip3 protein_coding protein_coding MGP_C57BL6NJ_T0025145.1 MGP_C57BL6NJ_G0017441.1 mouse_genomes_project 10 17130578 17133645 - MGP_C57BL6NJ_P0025145 Tnfaip3 protein_coding protein_coding MGP_C57BL6NJ_T0025786.1 MGP_C57BL6NJ_G0017667.1 mouse_genomes_project 10 62115669 62153451 - MGP_C57BL6NJ_P0025786 Slc29a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025787.1 MGP_C57BL6NJ_G0017667.1 mouse_genomes_project 10 62116276 62154437 - MGP_C57BL6NJ_P0025787 Slc29a3 protein_coding protein_coding MGP_C57BL6NJ_T0025788.1 MGP_C57BL6NJ_G0017667.1 mouse_genomes_project 10 62116470 62124743 - Slc29a3 protein_coding retained_intron MGP_C57BL6NJ_T0025789.1 MGP_C57BL6NJ_G0017667.1 mouse_genomes_project 10 62121287 62153462 - Slc29a3 protein_coding processed_transcript MGP_C57BL6NJ_T0099689.1 MGP_C57BL6NJ_G0037735.1 mouse_genomes_project 10 51855506 51855613 + Gm26257 snRNA snRNA MGP_C57BL6NJ_T0027906.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136372979 136388297 + MGP_C57BL6NJ_P0027906 Gls2 protein_coding protein_coding MGP_C57BL6NJ_T0027907.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373162 136377651 + MGP_C57BL6NJ_P0027907 Gls2 protein_coding protein_coding MGP_C57BL6NJ_T0027908.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373244 136388292 + MGP_C57BL6NJ_P0027908 Gls2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027909.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373247 136378028 + Gls2 protein_coding processed_transcript MGP_C57BL6NJ_T0027910.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373251 136388362 + MGP_C57BL6NJ_P0027910 Gls2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027911.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373273 136388292 + MGP_C57BL6NJ_P0027911 Gls2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027912.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136373331 136378186 + Gls2 protein_coding retained_intron MGP_C57BL6NJ_T0027913.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136381613 136382549 + Gls2 protein_coding retained_intron MGP_C57BL6NJ_T0027914.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136382040 136385361 + Gls2 protein_coding processed_transcript MGP_C57BL6NJ_T0027915.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136382121 136388300 + Gls2 protein_coding retained_intron MGP_C57BL6NJ_T0027916.1 MGP_C57BL6NJ_G0018244.1 mouse_genomes_project 10 136385282 136388088 + MGP_C57BL6NJ_P0027916 Gls2 protein_coding protein_coding MGP_C57BL6NJ_T0026797.1 MGP_C57BL6NJ_G0017922.1 mouse_genomes_project 10 84369513 84387266 - MGP_C57BL6NJ_P0026797 Lmnb2 protein_coding protein_coding MGP_C57BL6NJ_T0026798.1 MGP_C57BL6NJ_G0017922.1 mouse_genomes_project 10 84369699 84387266 - MGP_C57BL6NJ_P0026798 Lmnb2 protein_coding protein_coding MGP_C57BL6NJ_T0026799.1 MGP_C57BL6NJ_G0017922.1 mouse_genomes_project 10 84371133 84374748 - MGP_C57BL6NJ_P0026799 Lmnb2 protein_coding protein_coding MGP_C57BL6NJ_T0026800.1 MGP_C57BL6NJ_G0017922.1 mouse_genomes_project 10 84378092 84386872 - Lmnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0017587.1 MGP_C57BL6NJ_G0015530.1 mouse_genomes_project 10 72658975 72671623 + Mrln processed_transcript lincRNA MGP_C57BL6NJ_T0017588.1 MGP_C57BL6NJ_G0015530.1 mouse_genomes_project 10 72658978 72676049 + Mrln processed_transcript lincRNA MGP_C57BL6NJ_T0017589.1 MGP_C57BL6NJ_G0015530.1 mouse_genomes_project 10 72659021 72675918 + Mrln processed_transcript lincRNA MGP_C57BL6NJ_T0017590.1 MGP_C57BL6NJ_G0015530.1 mouse_genomes_project 10 72659036 72665258 + Mrln processed_transcript lincRNA MGP_C57BL6NJ_T0017591.1 MGP_C57BL6NJ_G0015530.1 mouse_genomes_project 10 72673234 72676048 + Mrln processed_transcript retained_intron MGP_C57BL6NJ_T0028022.1 MGP_C57BL6NJ_G0018287.1 mouse_genomes_project 10 137285384 137287552 + MGP_C57BL6NJ_P0028022 Olfr9 protein_coding protein_coding MGP_C57BL6NJ_T0100979.1 MGP_C57BL6NJ_G0039025.1 mouse_genomes_project 10 81098507 81098583 - Gm22394 snoRNA snoRNA MGP_C57BL6NJ_T0026105.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75254312 75280634 + MGP_C57BL6NJ_P0026105 Zwint protein_coding protein_coding MGP_C57BL6NJ_T0026106.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75254362 75275455 + MGP_C57BL6NJ_P0026106 Zwint protein_coding protein_coding MGP_C57BL6NJ_T0026107.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75254363 75274831 + MGP_C57BL6NJ_P0026107 Zwint protein_coding protein_coding MGP_C57BL6NJ_T0026108.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75254910 75256066 + Zwint protein_coding retained_intron MGP_C57BL6NJ_T0026109.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75255704 75256856 + Zwint protein_coding retained_intron MGP_C57BL6NJ_T0026110.1 MGP_C57BL6NJ_G0017741.1 mouse_genomes_project 10 75256058 75279994 + Zwint protein_coding processed_transcript MGP_C57BL6NJ_T0025820.1 MGP_C57BL6NJ_G0017679.1 mouse_genomes_project 10 63135851 63170248 + MGP_C57BL6NJ_P0025820 Npffr1 protein_coding protein_coding MGP_C57BL6NJ_T0006305.1 MGP_C57BL6NJ_G0005262.1 mouse_genomes_project 10 99364339 99381167 - Cep83os lincRNA lincRNA MGP_C57BL6NJ_T0025328.1 MGP_C57BL6NJ_G0017508.1 mouse_genomes_project 10 28139514 28199693 + MGP_C57BL6NJ_P0025328 Soga3 protein_coding protein_coding MGP_C57BL6NJ_T0027707.1 MGP_C57BL6NJ_G0018180.1 mouse_genomes_project 10 129282808 129295724 + MGP_C57BL6NJ_P0027707 BC048403 protein_coding protein_coding MGP_C57BL6NJ_T0027708.1 MGP_C57BL6NJ_G0018180.1 mouse_genomes_project 10 129282809 129295737 + MGP_C57BL6NJ_P0027708 BC048403 protein_coding protein_coding MGP_C57BL6NJ_T0027709.1 MGP_C57BL6NJ_G0018180.1 mouse_genomes_project 10 129293752 129295242 + BC048403 protein_coding processed_transcript MGP_C57BL6NJ_T0025079.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11356641 11601799 - MGP_C57BL6NJ_P0025079 Aig1 protein_coding protein_coding MGP_C57BL6NJ_T0025080.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11357256 11601641 - MGP_C57BL6NJ_P0025080 Aig1 protein_coding protein_coding MGP_C57BL6NJ_T0025081.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11363202 11601776 - MGP_C57BL6NJ_P0025081 Aig1 protein_coding protein_coding MGP_C57BL6NJ_T0025082.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11364339 11569409 - Aig1 protein_coding processed_transcript MGP_C57BL6NJ_T0025083.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11519961 11593728 - Aig1 protein_coding retained_intron MGP_C57BL6NJ_T0025084.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11550936 11601795 - Aig1 protein_coding retained_intron MGP_C57BL6NJ_T0025085.1 MGP_C57BL6NJ_G0017423.1 mouse_genomes_project 10 11553727 11601648 - Aig1 protein_coding processed_transcript MGP_C57BL6NJ_T0099678.1 MGP_C57BL6NJ_G0037724.1 mouse_genomes_project 10 30031965 30032072 - Gm24168 snRNA snRNA MGP_C57BL6NJ_T0026859.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84773502 84784104 + MGP_C57BL6NJ_P0026859 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026860.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778417 84784484 + MGP_C57BL6NJ_P0026860 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026861.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778417 84784484 + MGP_C57BL6NJ_P0026861 Matk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026862.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778417 84784100 + MGP_C57BL6NJ_P0026862 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026863.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778423 84784100 + MGP_C57BL6NJ_P0026863 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026864.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778460 84784104 + Matk protein_coding retained_intron MGP_C57BL6NJ_T0026865.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778566 84781645 + Matk protein_coding retained_intron MGP_C57BL6NJ_T0026866.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84778948 84780772 + MGP_C57BL6NJ_P0026866 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026867.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84779036 84784094 + MGP_C57BL6NJ_P0026867 Matk protein_coding protein_coding MGP_C57BL6NJ_T0026868.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84779333 84784032 + Matk protein_coding retained_intron MGP_C57BL6NJ_T0026869.1 MGP_C57BL6NJ_G0017939.1 mouse_genomes_project 10 84782288 84783786 + Matk protein_coding retained_intron MGP_C57BL6NJ_T0003199.1 MGP_C57BL6NJ_G0002976.1 mouse_genomes_project 10 79227713 79229409 + Gm16240 antisense antisense MGP_C57BL6NJ_T0006239.1 MGP_C57BL6NJ_G0005219.1 mouse_genomes_project 10 19710648 19719263 + 1700021A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006240.1 MGP_C57BL6NJ_G0005219.1 mouse_genomes_project 10 19710767 19718444 + 1700021A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006241.1 MGP_C57BL6NJ_G0005219.1 mouse_genomes_project 10 19718039 19718348 + 1700021A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0003180.1 MGP_C57BL6NJ_G0002960.1 mouse_genomes_project 10 43180593 43182009 + Gm29245 antisense antisense MGP_C57BL6NJ_T0025716.1 MGP_C57BL6NJ_G0017651.1 mouse_genomes_project 10 60587226 60640002 + MGP_C57BL6NJ_P0025716 P4ha1 protein_coding protein_coding MGP_C57BL6NJ_T0025717.1 MGP_C57BL6NJ_G0017651.1 mouse_genomes_project 10 60587294 60638656 + MGP_C57BL6NJ_P0025717 P4ha1 protein_coding protein_coding MGP_C57BL6NJ_T0025718.1 MGP_C57BL6NJ_G0017651.1 mouse_genomes_project 10 60587298 60638951 + MGP_C57BL6NJ_P0025718 P4ha1 protein_coding protein_coding MGP_C57BL6NJ_T0012737.1 MGP_C57BL6NJ_G0010782.1 mouse_genomes_project 10 124677308 124678017 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027042.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86421967 86437409 - MGP_C57BL6NJ_P0027042 Nfyb protein_coding protein_coding MGP_C57BL6NJ_T0027043.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86422553 86437366 - Nfyb protein_coding retained_intron MGP_C57BL6NJ_T0027044.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86423740 86424926 - Nfyb protein_coding retained_intron MGP_C57BL6NJ_T0027045.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86424432 86425817 - Nfyb protein_coding retained_intron MGP_C57BL6NJ_T0027046.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86425682 86436928 - Nfyb protein_coding processed_transcript MGP_C57BL6NJ_T0027047.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86425784 86436911 - MGP_C57BL6NJ_P0027047 Nfyb protein_coding protein_coding MGP_C57BL6NJ_T0027048.1 MGP_C57BL6NJ_G0017980.1 mouse_genomes_project 10 86428335 86430575 - Nfyb protein_coding retained_intron MGP_C57BL6NJ_T0099240.1 MGP_C57BL6NJ_G0037304.1 mouse_genomes_project 10 136650557 136650688 + Gm26347 scaRNA scaRNA MGP_C57BL6NJ_T0026708.1 MGP_C57BL6NJ_G0017894.1 mouse_genomes_project 10 83786112 83793363 - MGP_C57BL6NJ_P0026708 Mex3d protein_coding protein_coding MGP_C57BL6NJ_T0026709.1 MGP_C57BL6NJ_G0017894.1 mouse_genomes_project 10 83786114 83793363 - MGP_C57BL6NJ_P0026709 Mex3d protein_coding protein_coding MGP_C57BL6NJ_T0026710.1 MGP_C57BL6NJ_G0017894.1 mouse_genomes_project 10 83786211 83787745 - MGP_C57BL6NJ_P0026710 Mex3d protein_coding protein_coding MGP_C57BL6NJ_T0026436.1 MGP_C57BL6NJ_G0017823.1 mouse_genomes_project 10 81855261 81862178 - MGP_C57BL6NJ_P0026436 Olfr1357 protein_coding protein_coding MGP_C57BL6NJ_T0026437.1 MGP_C57BL6NJ_G0017823.1 mouse_genomes_project 10 81855261 81856273 - MGP_C57BL6NJ_P0026437 Olfr1357 protein_coding protein_coding MGP_C57BL6NJ_T0026438.1 MGP_C57BL6NJ_G0017823.1 mouse_genomes_project 10 81855525 81862178 - MGP_C57BL6NJ_P0026438 Olfr1357 protein_coding protein_coding MGP_C57BL6NJ_T0000957.1 MGP_C57BL6NJ_G0000867.1 mouse_genomes_project 10 106257582 106258346 - TEC TEC MGP_C57BL6NJ_T0025763.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61662414 62049149 - MGP_C57BL6NJ_P0025763 Cdh23 protein_coding protein_coding MGP_C57BL6NJ_T0025764.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61662414 62049149 - MGP_C57BL6NJ_P0025764 Cdh23 protein_coding protein_coding MGP_C57BL6NJ_T0025765.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61662416 62092647 - MGP_C57BL6NJ_P0025765 Cdh23 protein_coding protein_coding MGP_C57BL6NJ_T0025766.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61662416 62092647 - MGP_C57BL6NJ_P0025766 Cdh23 protein_coding protein_coding MGP_C57BL6NJ_T0025767.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61662416 62092647 - MGP_C57BL6NJ_P0025767 Cdh23 protein_coding protein_coding MGP_C57BL6NJ_T0025768.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61665090 61683332 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025769.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61665090 61683332 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025770.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61665115 62049149 - Cdh23 protein_coding retained_intron MGP_C57BL6NJ_T0025771.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61665115 62049149 - Cdh23 protein_coding retained_intron MGP_C57BL6NJ_T0025772.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61665168 61667466 - Cdh23 protein_coding retained_intron MGP_C57BL6NJ_T0025779.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61742549 61754133 - Cdh23 protein_coding retained_intron MGP_C57BL6NJ_T0025780.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61743871 61773546 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025781.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61743965 61747290 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025783.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 61967923 62092647 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025784.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 62020297 62044849 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0025785.1 MGP_C57BL6NJ_G0017664.1 mouse_genomes_project 10 62049081 62083414 - Cdh23 protein_coding processed_transcript MGP_C57BL6NJ_T0026442.1 MGP_C57BL6NJ_G0017827.1 mouse_genomes_project 10 82099794 82100757 - MGP_C57BL6NJ_P0026442 Olfr1356 protein_coding protein_coding MGP_C57BL6NJ_T0026443.1 MGP_C57BL6NJ_G0017827.1 mouse_genomes_project 10 82099794 82105010 - MGP_C57BL6NJ_P0026443 Olfr1356 protein_coding protein_coding MGP_C57BL6NJ_T0100959.1 MGP_C57BL6NJ_G0039005.1 mouse_genomes_project 10 36244839 36244986 - Gm22554 snoRNA snoRNA MGP_C57BL6NJ_T0102395.1 MGP_C57BL6NJ_G0040324.1 mouse_genomes_project 10 20711052 20717341 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102396.1 MGP_C57BL6NJ_G0040324.1 mouse_genomes_project 10 20711054 20713621 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102397.1 MGP_C57BL6NJ_G0040324.1 mouse_genomes_project 10 20711604 20718593 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0025968.1 MGP_C57BL6NJ_G0017716.1 mouse_genomes_project 10 69167360 69265412 - MGP_C57BL6NJ_P0025968 Reep3 protein_coding protein_coding MGP_C57BL6NJ_T0025511.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41611032 41705056 - MGP_C57BL6NJ_P0025511 Cep57l1 protein_coding protein_coding MGP_C57BL6NJ_T0025512.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41611886 41705090 - MGP_C57BL6NJ_P0025512 Cep57l1 protein_coding protein_coding MGP_C57BL6NJ_T0025513.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41612038 41705065 - MGP_C57BL6NJ_P0025513 Cep57l1 protein_coding protein_coding MGP_C57BL6NJ_T0025514.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41613364 41615103 - MGP_C57BL6NJ_P0025514 Cep57l1 protein_coding protein_coding MGP_C57BL6NJ_T0025515.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41617754 41621140 - Cep57l1 protein_coding retained_intron MGP_C57BL6NJ_T0025516.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41620715 41639953 - Cep57l1 protein_coding retained_intron MGP_C57BL6NJ_T0025517.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41636016 41705055 - Cep57l1 protein_coding retained_intron MGP_C57BL6NJ_T0025518.1 MGP_C57BL6NJ_G0017578.1 mouse_genomes_project 10 41638054 41705073 - Cep57l1 protein_coding retained_intron MGP_C57BL6NJ_T0027493.1 MGP_C57BL6NJ_G0018103.1 mouse_genomes_project 10 112378152 112881868 + MGP_C57BL6NJ_P0027493 Ppfia2 protein_coding protein_coding MGP_C57BL6NJ_T0027494.1 MGP_C57BL6NJ_G0018103.1 mouse_genomes_project 10 112378188 112716604 + MGP_C57BL6NJ_P0027494 Ppfia2 protein_coding protein_coding MGP_C57BL6NJ_T0003189.1 MGP_C57BL6NJ_G0002967.1 mouse_genomes_project 10 64727878 64738091 + antisense antisense MGP_C57BL6NJ_T0025988.1 MGP_C57BL6NJ_G0017721.1 mouse_genomes_project 10 69775418 69777640 + MGP_C57BL6NJ_P0025988 Gm10797 protein_coding protein_coding MGP_C57BL6NJ_T0026677.1 MGP_C57BL6NJ_G0017887.1 mouse_genomes_project 10 83694028 83696222 + MGP_C57BL6NJ_P0026677 Rps15 protein_coding protein_coding MGP_C57BL6NJ_T0026678.1 MGP_C57BL6NJ_G0017887.1 mouse_genomes_project 10 83694220 83696195 + MGP_C57BL6NJ_P0026678 Rps15 protein_coding protein_coding MGP_C57BL6NJ_T0027052.1 MGP_C57BL6NJ_G0017984.1 mouse_genomes_project 10 86945292 87054970 - MGP_C57BL6NJ_P0027052 Slc41a2 protein_coding protein_coding MGP_C57BL6NJ_T0027053.1 MGP_C57BL6NJ_G0017984.1 mouse_genomes_project 10 87016606 87019944 - Slc41a2 protein_coding processed_transcript MGP_C57BL6NJ_T0027054.1 MGP_C57BL6NJ_G0017984.1 mouse_genomes_project 10 87031376 87038018 - MGP_C57BL6NJ_P0027054 Slc41a2 protein_coding protein_coding MGP_C57BL6NJ_T0027055.1 MGP_C57BL6NJ_G0017984.1 mouse_genomes_project 10 87031503 87054528 - MGP_C57BL6NJ_P0027055 Slc41a2 protein_coding protein_coding MGP_C57BL6NJ_T0027056.1 MGP_C57BL6NJ_G0017984.1 mouse_genomes_project 10 87031733 87052418 - MGP_C57BL6NJ_P0027056 Slc41a2 protein_coding protein_coding MGP_C57BL6NJ_T0025244.1 MGP_C57BL6NJ_G0017475.1 mouse_genomes_project 10 22525683 22528695 + MGP_C57BL6NJ_P0025244 Taar2 protein_coding protein_coding MGP_C57BL6NJ_T0000949.1 MGP_C57BL6NJ_G0000860.1 mouse_genomes_project 10 75829746 75830139 - TEC TEC MGP_C57BL6NJ_T0009774.1 MGP_C57BL6NJ_G0007859.1 mouse_genomes_project 10 60195781 60195985 + Gm27672 miRNA miRNA MGP_C57BL6NJ_T0026733.1 MGP_C57BL6NJ_G0017898.1 mouse_genomes_project 10 83907721 83938419 + MGP_C57BL6NJ_P0026733 Onecut3 protein_coding protein_coding MGP_C57BL6NJ_T0026485.1 MGP_C57BL6NJ_G0017846.1 mouse_genomes_project 10 82993220 82999420 + MGP_C57BL6NJ_P0026485 Cdc34 protein_coding protein_coding MGP_C57BL6NJ_T0026486.1 MGP_C57BL6NJ_G0017846.1 mouse_genomes_project 10 82993329 82999420 + MGP_C57BL6NJ_P0026486 Cdc34 protein_coding protein_coding MGP_C57BL6NJ_T0026847.1 MGP_C57BL6NJ_G0017935.1 mouse_genomes_project 10 84691325 84706489 + MGP_C57BL6NJ_P0026847 Dapk3 protein_coding protein_coding MGP_C57BL6NJ_T0000948.1 MGP_C57BL6NJ_G0000859.1 mouse_genomes_project 10 64847966 64848308 + TEC TEC MGP_C57BL6NJ_T0025721.1 MGP_C57BL6NJ_G0017653.1 mouse_genomes_project 10 60691464 60710711 - MGP_C57BL6NJ_P0025721 Oit3 protein_coding protein_coding MGP_C57BL6NJ_T0025722.1 MGP_C57BL6NJ_G0017653.1 mouse_genomes_project 10 60696647 60699427 - Oit3 protein_coding retained_intron MGP_C57BL6NJ_T0027302.1 MGP_C57BL6NJ_G0018044.1 mouse_genomes_project 10 95496588 95520636 - MGP_C57BL6NJ_P0027302 Tmpo protein_coding protein_coding MGP_C57BL6NJ_T0027303.1 MGP_C57BL6NJ_G0018044.1 mouse_genomes_project 10 95496588 95520636 - MGP_C57BL6NJ_P0027303 Tmpo protein_coding protein_coding MGP_C57BL6NJ_T0027304.1 MGP_C57BL6NJ_G0018044.1 mouse_genomes_project 10 95496588 95520636 - MGP_C57BL6NJ_P0027304 Tmpo protein_coding protein_coding MGP_C57BL6NJ_T0027305.1 MGP_C57BL6NJ_G0018044.1 mouse_genomes_project 10 95496588 95520636 - MGP_C57BL6NJ_P0027305 Tmpo protein_coding protein_coding MGP_C57BL6NJ_T0027306.1 MGP_C57BL6NJ_G0018044.1 mouse_genomes_project 10 95509434 95520636 - MGP_C57BL6NJ_P0027306 Tmpo protein_coding protein_coding MGP_C57BL6NJ_T0027965.1 MGP_C57BL6NJ_G0018262.1 mouse_genomes_project 10 136715739 136721115 - MGP_C57BL6NJ_P0027965 Myl6b protein_coding protein_coding MGP_C57BL6NJ_T0027652.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 126704431 127395994 + MGP_C57BL6NJ_P0027652 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027653.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 126704710 127382634 + MGP_C57BL6NJ_P0027653 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027654.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 126704716 127384176 + MGP_C57BL6NJ_P0027654 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027655.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094284 127384176 + MGP_C57BL6NJ_P0027655 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027656.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094293 127383553 + MGP_C57BL6NJ_P0027656 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027657.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094400 127308108 + Grip1 protein_coding retained_intron MGP_C57BL6NJ_T0027658.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094407 127382634 + MGP_C57BL6NJ_P0027658 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027659.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094407 127382634 + MGP_C57BL6NJ_P0027659 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027660.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094410 127382554 + MGP_C57BL6NJ_P0027660 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027661.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127094420 127395794 + MGP_C57BL6NJ_P0027661 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027662.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127128802 127384171 + Grip1 protein_coding retained_intron MGP_C57BL6NJ_T0027663.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127191771 127382554 + Grip1 protein_coding processed_transcript MGP_C57BL6NJ_T0027664.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127288719 127395995 + MGP_C57BL6NJ_P0027664 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027665.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127288921 127384048 + MGP_C57BL6NJ_P0027665 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027666.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127289069 127382830 + MGP_C57BL6NJ_P0027666 Grip1 protein_coding protein_coding MGP_C57BL6NJ_T0027667.1 MGP_C57BL6NJ_G0018164.1 mouse_genomes_project 10 127289105 127395994 + MGP_C57BL6NJ_P0027667 Grip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026360.1 MGP_C57BL6NJ_G0017797.1 mouse_genomes_project 10 80774366 80775164 - MGP_C57BL6NJ_P0026360 Gm19402 protein_coding protein_coding MGP_C57BL6NJ_T0027918.1 MGP_C57BL6NJ_G0018246.1 mouse_genomes_project 10 136407634 136413609 + MGP_C57BL6NJ_P0027918 Mip protein_coding protein_coding MGP_C57BL6NJ_T0012697.1 MGP_C57BL6NJ_G0010742.1 mouse_genomes_project 10 24625556 24626166 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027933.1 MGP_C57BL6NJ_G0018248.1 mouse_genomes_project 10 136441986 136443757 + MGP_C57BL6NJ_P0027933 Apon protein_coding protein_coding MGP_C57BL6NJ_T0025387.1 MGP_C57BL6NJ_G0017540.1 mouse_genomes_project 10 33777906 33914376 + MGP_C57BL6NJ_P0025387 Frk protein_coding protein_coding MGP_C57BL6NJ_T0025388.1 MGP_C57BL6NJ_G0017540.1 mouse_genomes_project 10 33777906 33914376 + MGP_C57BL6NJ_P0025388 Frk protein_coding protein_coding MGP_C57BL6NJ_T0006285.1 MGP_C57BL6NJ_G0005255.1 mouse_genomes_project 10 92475083 92479551 - Gm26546 lincRNA lincRNA MGP_C57BL6NJ_T0026903.1 MGP_C57BL6NJ_G0017949.1 mouse_genomes_project 10 84894214 84896002 - MGP_C57BL6NJ_P0026903 4930404N11Rik protein_coding protein_coding MGP_C57BL6NJ_T0026904.1 MGP_C57BL6NJ_G0017949.1 mouse_genomes_project 10 84895070 84896024 - 4930404N11Rik protein_coding retained_intron MGP_C57BL6NJ_T0026905.1 MGP_C57BL6NJ_G0017949.1 mouse_genomes_project 10 84895171 84896964 - MGP_C57BL6NJ_P0026905 4930404N11Rik protein_coding protein_coding MGP_C57BL6NJ_T0026906.1 MGP_C57BL6NJ_G0017949.1 mouse_genomes_project 10 84895194 84896938 - 4930404N11Rik protein_coding retained_intron MGP_C57BL6NJ_T0012715.1 MGP_C57BL6NJ_G0010760.1 mouse_genomes_project 10 60990255 60990504 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025034.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10734242 10803590 + MGP_C57BL6NJ_P0025034 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025035.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765751 10801096 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025036.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765772 10801251 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025037.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765848 10801135 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025038.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765848 10807756 + MGP_C57BL6NJ_P0025038 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025039.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10790470 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025040.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10792985 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025041.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10793044 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025042.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10792967 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025043.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10793027 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025044.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10801216 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025045.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10785184 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025046.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10792983 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025047.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10782656 + Plagl1 protein_coding retained_intron MGP_C57BL6NJ_T0025048.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10801153 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025049.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10801135 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025050.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10788819 + Plagl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025051.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765892 10807217 + MGP_C57BL6NJ_P0025051 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025052.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765895 10807204 + MGP_C57BL6NJ_P0025052 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025053.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765901 10789715 + Plagl1 protein_coding retained_intron MGP_C57BL6NJ_T0025054.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765934 10789055 + Plagl1 protein_coding retained_intron MGP_C57BL6NJ_T0025055.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10765934 10789155 + Plagl1 protein_coding retained_intron MGP_C57BL6NJ_T0025056.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10766073 10801266 + MGP_C57BL6NJ_P0025056 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025057.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10789735 10803577 + MGP_C57BL6NJ_P0025057 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0025058.1 MGP_C57BL6NJ_G0017416.1 mouse_genomes_project 10 10792626 10801303 + MGP_C57BL6NJ_P0025058 Plagl1 protein_coding protein_coding MGP_C57BL6NJ_T0100988.1 MGP_C57BL6NJ_G0039034.1 mouse_genomes_project 10 108838098 108838231 + Gm25376 snoRNA snoRNA MGP_C57BL6NJ_T0024973.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5109246 5122216 - MGP_C57BL6NJ_P0024973 Ginm1 protein_coding protein_coding MGP_C57BL6NJ_T0024974.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5109249 5111851 - Ginm1 protein_coding retained_intron MGP_C57BL6NJ_T0024975.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5109255 5122190 - MGP_C57BL6NJ_P0024975 Ginm1 protein_coding protein_coding MGP_C57BL6NJ_T0024976.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5120601 5134079 - Ginm1 protein_coding processed_transcript MGP_C57BL6NJ_T0024977.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5132698 5134103 - Ginm1 protein_coding processed_transcript MGP_C57BL6NJ_T0024978.1 MGP_C57BL6NJ_G0017397.1 mouse_genomes_project 10 5133801 5134101 - MGP_C57BL6NJ_P0024978 Ginm1 protein_coding protein_coding MGP_C57BL6NJ_T0028076.1 MGP_C57BL6NJ_G0018325.1 mouse_genomes_project 10 138198340 138199649 + MGP_C57BL6NJ_P0028076 protein_coding protein_coding MGP_C57BL6NJ_T0011546.1 MGP_C57BL6NJ_G0009631.1 mouse_genomes_project 10 121665631 121665956 - Gm25319 misc_RNA misc_RNA MGP_C57BL6NJ_T0027644.1 MGP_C57BL6NJ_G0018160.1 mouse_genomes_project 10 125360601 125364353 + MGP_C57BL6NJ_P0027644 Il22 protein_coding protein_coding MGP_C57BL6NJ_T0027645.1 MGP_C57BL6NJ_G0018160.1 mouse_genomes_project 10 125363754 125364349 + Il22 protein_coding retained_intron MGP_C57BL6NJ_T0006324.1 MGP_C57BL6NJ_G0005275.1 mouse_genomes_project 10 126660622 126675888 + 1700025F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0025305.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 25851030 25859509 - Lama2 protein_coding retained_intron MGP_C57BL6NJ_T0025306.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 25852279 26526504 - MGP_C57BL6NJ_P0025306 Lama2 protein_coding protein_coding MGP_C57BL6NJ_T0025307.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 25852489 26526457 - MGP_C57BL6NJ_P0025307 Lama2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025308.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 26075793 26526457 - MGP_C57BL6NJ_P0025308 Lama2 protein_coding protein_coding MGP_C57BL6NJ_T0025309.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 26158513 26526603 - Lama2 protein_coding retained_intron MGP_C57BL6NJ_T0025310.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 26246898 26526527 - Lama2 protein_coding retained_intron MGP_C57BL6NJ_T0025311.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 26324386 26529419 - Lama2 protein_coding retained_intron MGP_C57BL6NJ_T0025312.1 MGP_C57BL6NJ_G0017503.1 mouse_genomes_project 10 26377387 26526527 - Lama2 protein_coding processed_transcript MGP_C57BL6NJ_T0026392.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222278 81240089 - MGP_C57BL6NJ_P0026392 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026393.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222278 81240089 - MGP_C57BL6NJ_P0026393 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026394.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222278 81240089 - MGP_C57BL6NJ_P0026394 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026395.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222279 81234672 - Aire protein_coding retained_intron MGP_C57BL6NJ_T0026396.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222279 81240119 - MGP_C57BL6NJ_P0026396 Aire protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026397.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026397 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026398.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026398 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026399.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026399 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026400.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026400 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026401.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026401 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026402.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026402 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026403.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222287 81240089 - MGP_C57BL6NJ_P0026403 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026404.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222327 81240089 - MGP_C57BL6NJ_P0026404 Aire protein_coding protein_coding MGP_C57BL6NJ_T0026405.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81222327 81240081 - MGP_C57BL6NJ_P0026405 Aire protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026406.1 MGP_C57BL6NJ_G0017810.1 mouse_genomes_project 10 81223909 81234674 - Aire protein_coding retained_intron MGP_C57BL6NJ_T0026252.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79134911 79172250 - MGP_C57BL6NJ_P0026252 Prmt2 protein_coding protein_coding MGP_C57BL6NJ_T0026253.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79134916 79172222 - MGP_C57BL6NJ_P0026253 Prmt2 protein_coding protein_coding MGP_C57BL6NJ_T0026254.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79134921 79172215 - MGP_C57BL6NJ_P0026254 Prmt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026255.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79134921 79172221 - MGP_C57BL6NJ_P0026255 Prmt2 protein_coding protein_coding MGP_C57BL6NJ_T0026256.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79135665 79172242 - MGP_C57BL6NJ_P0026256 Prmt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026257.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79136107 79141586 - Prmt2 protein_coding retained_intron MGP_C57BL6NJ_T0026258.1 MGP_C57BL6NJ_G0017773.1 mouse_genomes_project 10 79136133 79142272 - Prmt2 protein_coding processed_transcript MGP_C57BL6NJ_T0006246.1 MGP_C57BL6NJ_G0005223.1 mouse_genomes_project 10 22767862 22776964 + Gm15137 lincRNA lincRNA MGP_C57BL6NJ_T0028093.1 MGP_C57BL6NJ_G0018339.1 mouse_genomes_project 10 138588733 138606768 - MGP_C57BL6NJ_P0028093 protein_coding protein_coding MGP_C57BL6NJ_T0027884.1 MGP_C57BL6NJ_G0018237.1 mouse_genomes_project 10 136123439 136134169 - MGP_C57BL6NJ_P0027884 Hsd17b6 protein_coding protein_coding MGP_C57BL6NJ_T0101001.1 MGP_C57BL6NJ_G0039047.1 mouse_genomes_project 10 136245134 136245208 + Snord59a snoRNA snoRNA MGP_C57BL6NJ_T0009811.1 MGP_C57BL6NJ_G0007896.1 mouse_genomes_project 10 98574626 98574722 - Mir331 miRNA miRNA MGP_C57BL6NJ_T0027012.1 MGP_C57BL6NJ_G0017971.1 mouse_genomes_project 10 85734626 85761755 + MGP_C57BL6NJ_P0027012 AU041133 protein_coding protein_coding MGP_C57BL6NJ_T0027013.1 MGP_C57BL6NJ_G0017971.1 mouse_genomes_project 10 85744860 85760701 + MGP_C57BL6NJ_P0027013 AU041133 protein_coding protein_coding MGP_C57BL6NJ_T0025128.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16462974 16609108 + MGP_C57BL6NJ_P0025128 Nhsl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025129.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16481266 16496172 + Nhsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025130.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16481303 16597324 + Nhsl1 protein_coding retained_intron MGP_C57BL6NJ_T0025131.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16481303 16618711 + MGP_C57BL6NJ_P0025131 Nhsl1 protein_coding protein_coding MGP_C57BL6NJ_T0025132.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16550108 16553648 + Nhsl1 protein_coding retained_intron MGP_C57BL6NJ_T0025133.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16550188 16582911 + Nhsl1 protein_coding processed_transcript MGP_C57BL6NJ_T0025134.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16550201 16610778 + MGP_C57BL6NJ_P0025134 Nhsl1 protein_coding protein_coding MGP_C57BL6NJ_T0025135.1 MGP_C57BL6NJ_G0017436.1 mouse_genomes_project 10 16550201 16618708 + MGP_C57BL6NJ_P0025135 Nhsl1 protein_coding protein_coding MGP_C57BL6NJ_T0027495.1 MGP_C57BL6NJ_G0018104.1 mouse_genomes_project 10 112884564 113097029 - MGP_C57BL6NJ_P0027495 Acss3 protein_coding protein_coding MGP_C57BL6NJ_T0027496.1 MGP_C57BL6NJ_G0018104.1 mouse_genomes_project 10 112920079 113097029 - MGP_C57BL6NJ_P0027496 Acss3 protein_coding protein_coding MGP_C57BL6NJ_T0027497.1 MGP_C57BL6NJ_G0018104.1 mouse_genomes_project 10 113078404 113097010 - Acss3 protein_coding processed_transcript MGP_C57BL6NJ_T0100952.1 MGP_C57BL6NJ_G0038998.1 mouse_genomes_project 10 22347021 22347150 - Snora33 snoRNA snoRNA MGP_C57BL6NJ_T0027699.1 MGP_C57BL6NJ_G0018176.1 mouse_genomes_project 10 128911652 128985064 - MGP_C57BL6NJ_P0027699 Rassf3 protein_coding protein_coding MGP_C57BL6NJ_T0099723.1 MGP_C57BL6NJ_G0037769.1 mouse_genomes_project 10 119505970 119506130 + Gm22507 snRNA snRNA MGP_C57BL6NJ_T0025715.1 MGP_C57BL6NJ_G0017650.1 mouse_genomes_project 10 60471843 60476325 + MGP_C57BL6NJ_P0025715 Sowahc protein_coding protein_coding MGP_C57BL6NJ_T0003164.1 MGP_C57BL6NJ_G0002949.1 mouse_genomes_project 10 20552890 20705408 - Gm26740 antisense antisense MGP_C57BL6NJ_T0003165.1 MGP_C57BL6NJ_G0002949.1 mouse_genomes_project 10 20677194 20705731 - Gm26740 antisense antisense MGP_C57BL6NJ_T0027503.1 MGP_C57BL6NJ_G0018109.1 mouse_genomes_project 10 113805827 113981427 - MGP_C57BL6NJ_P0027503 Otogl protein_coding protein_coding MGP_C57BL6NJ_T0027958.1 MGP_C57BL6NJ_G0018259.1 mouse_genomes_project 10 136622727 136656080 + MGP_C57BL6NJ_P0027958 Rnf41 protein_coding protein_coding MGP_C57BL6NJ_T0027959.1 MGP_C57BL6NJ_G0018259.1 mouse_genomes_project 10 136622727 136656080 + MGP_C57BL6NJ_P0027959 Rnf41 protein_coding protein_coding MGP_C57BL6NJ_T0026507.1 MGP_C57BL6NJ_G0017851.1 mouse_genomes_project 10 83072264 83074107 + MGP_C57BL6NJ_P0026507 Fgf22 protein_coding protein_coding MGP_C57BL6NJ_T0006278.1 MGP_C57BL6NJ_G0005249.1 mouse_genomes_project 10 85162681 85166105 - Gm26896 lincRNA lincRNA MGP_C57BL6NJ_T0100986.1 MGP_C57BL6NJ_G0039032.1 mouse_genomes_project 10 102933999 102934127 - Gm25658 snoRNA snoRNA MGP_C57BL6NJ_T0012736.1 MGP_C57BL6NJ_G0010781.1 mouse_genomes_project 10 124502116 124502615 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027623.1 MGP_C57BL6NJ_G0018154.1 mouse_genomes_project 10 124723381 124729085 + Cpm protein_coding processed_transcript MGP_C57BL6NJ_T0027624.1 MGP_C57BL6NJ_G0018154.1 mouse_genomes_project 10 124723381 124763638 + Cpm protein_coding retained_intron MGP_C57BL6NJ_T0027625.1 MGP_C57BL6NJ_G0018154.1 mouse_genomes_project 10 124723381 124785356 + MGP_C57BL6NJ_P0027625 Cpm protein_coding protein_coding MGP_C57BL6NJ_T0027626.1 MGP_C57BL6NJ_G0018154.1 mouse_genomes_project 10 124773927 124782938 + Cpm protein_coding retained_intron MGP_C57BL6NJ_T0026440.1 MGP_C57BL6NJ_G0017825.1 mouse_genomes_project 10 82000697 82006841 - MGP_C57BL6NJ_P0026440 Ccdc105 protein_coding protein_coding MGP_C57BL6NJ_T0026388.1 MGP_C57BL6NJ_G0017809.1 mouse_genomes_project 10 81172579 81205941 - MGP_C57BL6NJ_P0026388 Pfkl protein_coding protein_coding MGP_C57BL6NJ_T0026389.1 MGP_C57BL6NJ_G0017809.1 mouse_genomes_project 10 81178358 81180072 - Pfkl protein_coding retained_intron MGP_C57BL6NJ_T0026390.1 MGP_C57BL6NJ_G0017809.1 mouse_genomes_project 10 81193364 81196063 - Pfkl protein_coding retained_intron MGP_C57BL6NJ_T0026391.1 MGP_C57BL6NJ_G0017809.1 mouse_genomes_project 10 81196808 81206217 - Pfkl protein_coding processed_transcript MGP_C57BL6NJ_T0026271.1 MGP_C57BL6NJ_G0017778.1 mouse_genomes_project 10 79413575 79423242 - MGP_C57BL6NJ_P0026271 Ybey protein_coding protein_coding MGP_C57BL6NJ_T0025821.1 MGP_C57BL6NJ_G0017680.1 mouse_genomes_project 10 63191324 63218216 + MGP_C57BL6NJ_P0025821 Ppa1 protein_coding protein_coding MGP_C57BL6NJ_T0025822.1 MGP_C57BL6NJ_G0017680.1 mouse_genomes_project 10 63191393 63195619 + Ppa1 protein_coding retained_intron MGP_C57BL6NJ_T0025823.1 MGP_C57BL6NJ_G0017680.1 mouse_genomes_project 10 63206740 63209478 + Ppa1 protein_coding processed_transcript MGP_C57BL6NJ_T0025824.1 MGP_C57BL6NJ_G0017680.1 mouse_genomes_project 10 63207741 63209658 + Ppa1 protein_coding retained_intron MGP_C57BL6NJ_T0006319.1 MGP_C57BL6NJ_G0005273.1 mouse_genomes_project 10 123939274 123941964 + D630029K05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006320.1 MGP_C57BL6NJ_G0005273.1 mouse_genomes_project 10 123939307 123942150 + D630029K05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006321.1 MGP_C57BL6NJ_G0005273.1 mouse_genomes_project 10 123940322 123942280 + D630029K05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006322.1 MGP_C57BL6NJ_G0005273.1 mouse_genomes_project 10 123940841 123943673 + D630029K05Rik lincRNA lincRNA MGP_C57BL6NJ_T0098953.1 MGP_C57BL6NJ_G0037017.1 mouse_genomes_project 10 99519588 99519715 - Gm24186 rRNA rRNA MGP_C57BL6NJ_T0006245.1 MGP_C57BL6NJ_G0005222.1 mouse_genomes_project 10 20156338 20172031 - Platr6 lincRNA lincRNA MGP_C57BL6NJ_T0027038.1 MGP_C57BL6NJ_G0017979.1 mouse_genomes_project 10 86369674 86382561 + Hcfc2 protein_coding processed_transcript MGP_C57BL6NJ_T0027039.1 MGP_C57BL6NJ_G0017979.1 mouse_genomes_project 10 86372521 86415695 + MGP_C57BL6NJ_P0027039 Hcfc2 protein_coding protein_coding MGP_C57BL6NJ_T0027040.1 MGP_C57BL6NJ_G0017979.1 mouse_genomes_project 10 86372725 86385734 + MGP_C57BL6NJ_P0027040 Hcfc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027041.1 MGP_C57BL6NJ_G0017979.1 mouse_genomes_project 10 86401774 86414662 + MGP_C57BL6NJ_P0027041 Hcfc2 protein_coding protein_coding MGP_C57BL6NJ_T0012690.1 MGP_C57BL6NJ_G0010735.1 mouse_genomes_project 10 20515546 20517513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006273.1 MGP_C57BL6NJ_G0005246.1 mouse_genomes_project 10 81076746 81079444 + 1700009J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006274.1 MGP_C57BL6NJ_G0005246.1 mouse_genomes_project 10 81076749 81079441 + 1700009J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006275.1 MGP_C57BL6NJ_G0005246.1 mouse_genomes_project 10 81076757 81077841 + 1700009J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0000471.1 MGP_C57BL6NJ_G0000390.1 mouse_genomes_project 10 88827287 88827355 + mt-Tp Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0028072.1 MGP_C57BL6NJ_G0018323.1 mouse_genomes_project 10 138184085 138187039 + MGP_C57BL6NJ_P0028072 Olfr808 protein_coding protein_coding MGP_C57BL6NJ_T0028073.1 MGP_C57BL6NJ_G0018323.1 mouse_genomes_project 10 138186100 138187039 + MGP_C57BL6NJ_P0028073 Olfr808 protein_coding protein_coding MGP_C57BL6NJ_T0026450.1 MGP_C57BL6NJ_G0017831.1 mouse_genomes_project 10 82276141 82279813 + MGP_C57BL6NJ_P0026450 Olfr1352 protein_coding protein_coding MGP_C57BL6NJ_T0026451.1 MGP_C57BL6NJ_G0017831.1 mouse_genomes_project 10 82276206 82279350 + MGP_C57BL6NJ_P0026451 Olfr1352 protein_coding protein_coding MGP_C57BL6NJ_T0025945.1 MGP_C57BL6NJ_G0017708.1 mouse_genomes_project 10 64849773 64850223 + MGP_C57BL6NJ_P0025945 Atoh7 protein_coding protein_coding MGP_C57BL6NJ_T0028049.1 MGP_C57BL6NJ_G0018308.1 mouse_genomes_project 10 137894581 137895550 + MGP_C57BL6NJ_P0028049 Olfr790 protein_coding protein_coding MGP_C57BL6NJ_T0025123.1 MGP_C57BL6NJ_G0017435.1 mouse_genomes_project 10 16272501 16292847 - MGP_C57BL6NJ_P0025123 Ccdc28a protein_coding protein_coding MGP_C57BL6NJ_T0025124.1 MGP_C57BL6NJ_G0017435.1 mouse_genomes_project 10 16272509 16287316 - MGP_C57BL6NJ_P0025124 Ccdc28a protein_coding protein_coding MGP_C57BL6NJ_T0025125.1 MGP_C57BL6NJ_G0017435.1 mouse_genomes_project 10 16272602 16275163 - Ccdc28a protein_coding retained_intron MGP_C57BL6NJ_T0025126.1 MGP_C57BL6NJ_G0017435.1 mouse_genomes_project 10 16272885 16278436 - MGP_C57BL6NJ_P0025126 Ccdc28a protein_coding protein_coding MGP_C57BL6NJ_T0025127.1 MGP_C57BL6NJ_G0017435.1 mouse_genomes_project 10 16275611 16292832 - MGP_C57BL6NJ_P0025127 Ccdc28a protein_coding protein_coding MGP_C57BL6NJ_T0006307.1 MGP_C57BL6NJ_G0005264.1 mouse_genomes_project 10 100746355 100803603 + 4732465J04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006308.1 MGP_C57BL6NJ_G0005264.1 mouse_genomes_project 10 100785471 100804008 + 4732465J04Rik lincRNA lincRNA MGP_C57BL6NJ_T0028058.1 MGP_C57BL6NJ_G0018315.1 mouse_genomes_project 10 138081229 138082186 - MGP_C57BL6NJ_P0028058 Olfr801 protein_coding protein_coding MGP_C57BL6NJ_T0028059.1 MGP_C57BL6NJ_G0018315.1 mouse_genomes_project 10 138081786 138087331 - MGP_C57BL6NJ_P0028059 Olfr801 protein_coding protein_coding MGP_C57BL6NJ_T0028060.1 MGP_C57BL6NJ_G0018315.1 mouse_genomes_project 10 138085722 138087303 - Olfr801 protein_coding processed_transcript MGP_C57BL6NJ_T0017563.1 MGP_C57BL6NJ_G0015525.1 mouse_genomes_project 10 23228250 23229150 - Gm15270 processed_transcript processed_transcript MGP_C57BL6NJ_T0017564.1 MGP_C57BL6NJ_G0015525.1 mouse_genomes_project 10 23228256 23273779 - Gm15270 processed_transcript processed_transcript MGP_C57BL6NJ_T0017565.1 MGP_C57BL6NJ_G0015525.1 mouse_genomes_project 10 23256107 23271736 - Gm15270 processed_transcript processed_transcript MGP_C57BL6NJ_T0017566.1 MGP_C57BL6NJ_G0015525.1 mouse_genomes_project 10 23273210 23275070 - Gm15270 processed_transcript processed_transcript MGP_C57BL6NJ_T0027339.1 MGP_C57BL6NJ_G0018056.1 mouse_genomes_project 10 98429097 98447333 + MGP_C57BL6NJ_P0027339 Usp44 protein_coding protein_coding MGP_C57BL6NJ_T0006269.1 MGP_C57BL6NJ_G0005242.1 mouse_genomes_project 10 69073561 69076259 + Gm26576 lincRNA lincRNA MGP_C57BL6NJ_T0011540.1 MGP_C57BL6NJ_G0009625.1 mouse_genomes_project 10 96554794 96554920 - Gm27582 misc_RNA misc_RNA MGP_C57BL6NJ_T0024968.1 MGP_C57BL6NJ_G0017396.1 mouse_genomes_project 10 5060250 5090963 + MGP_C57BL6NJ_P0024968 Katna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024969.1 MGP_C57BL6NJ_G0017396.1 mouse_genomes_project 10 5076971 5104469 + MGP_C57BL6NJ_P0024969 Katna1 protein_coding protein_coding MGP_C57BL6NJ_T0024970.1 MGP_C57BL6NJ_G0017396.1 mouse_genomes_project 10 5087088 5101548 + Katna1 protein_coding retained_intron MGP_C57BL6NJ_T0024971.1 MGP_C57BL6NJ_G0017396.1 mouse_genomes_project 10 5101086 5104379 + MGP_C57BL6NJ_P0024971 Katna1 protein_coding protein_coding MGP_C57BL6NJ_T0024972.1 MGP_C57BL6NJ_G0017396.1 mouse_genomes_project 10 5102547 5104463 + MGP_C57BL6NJ_P0024972 Katna1 protein_coding protein_coding MGP_C57BL6NJ_T0011539.1 MGP_C57BL6NJ_G0009624.1 mouse_genomes_project 10 96522930 96523133 - Gm27753 misc_RNA misc_RNA MGP_C57BL6NJ_T0102726.1 MGP_C57BL6NJ_G0040521.1 mouse_genomes_project 10 138391202 138392297 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099727.1 MGP_C57BL6NJ_G0037773.1 mouse_genomes_project 10 135150649 135150738 - Gm23664 snRNA snRNA MGP_C57BL6NJ_T0027894.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136244264 136251273 + MGP_C57BL6NJ_P0027894 Atp5b protein_coding protein_coding MGP_C57BL6NJ_T0027895.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136244297 136245078 + Atp5b protein_coding processed_transcript MGP_C57BL6NJ_T0027896.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136245424 136246941 + Atp5b protein_coding retained_intron MGP_C57BL6NJ_T0027897.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136246737 136251042 + Atp5b protein_coding retained_intron MGP_C57BL6NJ_T0027898.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136247221 136250034 + Atp5b protein_coding processed_transcript MGP_C57BL6NJ_T0027899.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136248562 136249933 + Atp5b protein_coding retained_intron MGP_C57BL6NJ_T0027900.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136249372 136250563 + Atp5b protein_coding retained_intron MGP_C57BL6NJ_T0027901.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136249433 136251155 + Atp5b protein_coding processed_transcript MGP_C57BL6NJ_T0027902.1 MGP_C57BL6NJ_G0018241.1 mouse_genomes_project 10 136249922 136251154 + Atp5b protein_coding processed_transcript MGP_C57BL6NJ_T0028027.1 MGP_C57BL6NJ_G0018292.1 mouse_genomes_project 10 137432361 137433445 - MGP_C57BL6NJ_P0028027 Olfr769 protein_coding protein_coding MGP_C57BL6NJ_T0100991.1 MGP_C57BL6NJ_G0039037.1 mouse_genomes_project 10 111951783 111951905 - Gm25342 snoRNA snoRNA MGP_C57BL6NJ_T0098794.1 MGP_C57BL6NJ_G0036858.1 mouse_genomes_project 10 16057247 16057485 + pseudogene pseudogene MGP_C57BL6NJ_T0027535.1 MGP_C57BL6NJ_G0018120.1 mouse_genomes_project 10 117861566 117863986 + MGP_C57BL6NJ_P0027535 Phlda1 protein_coding protein_coding MGP_C57BL6NJ_T0027536.1 MGP_C57BL6NJ_G0018120.1 mouse_genomes_project 10 117863036 117863506 + Phlda1 protein_coding processed_transcript MGP_C57BL6NJ_T0025109.1 MGP_C57BL6NJ_G0017430.1 mouse_genomes_project 10 15830418 15842101 + Txlnb protein_coding retained_intron MGP_C57BL6NJ_T0025110.1 MGP_C57BL6NJ_G0017430.1 mouse_genomes_project 10 15830448 15878102 + MGP_C57BL6NJ_P0025110 Txlnb protein_coding protein_coding MGP_C57BL6NJ_T0006248.1 MGP_C57BL6NJ_G0005225.1 mouse_genomes_project 10 33567977 33570973 - Gm26564 lincRNA lincRNA MGP_C57BL6NJ_T0012695.1 MGP_C57BL6NJ_G0010740.1 mouse_genomes_project 10 24625550 24626168 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025073.1 MGP_C57BL6NJ_G0017421.1 mouse_genomes_project 10 11229703 11260568 - MGP_C57BL6NJ_P0025073 Pex3 protein_coding protein_coding MGP_C57BL6NJ_T0025074.1 MGP_C57BL6NJ_G0017421.1 mouse_genomes_project 10 11230385 11260324 - MGP_C57BL6NJ_P0025074 Pex3 protein_coding protein_coding MGP_C57BL6NJ_T0025075.1 MGP_C57BL6NJ_G0017421.1 mouse_genomes_project 10 11234461 11241456 - Pex3 protein_coding retained_intron MGP_C57BL6NJ_T0025076.1 MGP_C57BL6NJ_G0017421.1 mouse_genomes_project 10 11236760 11260290 - Pex3 protein_coding processed_transcript MGP_C57BL6NJ_T0025077.1 MGP_C57BL6NJ_G0017421.1 mouse_genomes_project 10 11241221 11260245 - Pex3 protein_coding processed_transcript MGP_C57BL6NJ_T0098798.1 MGP_C57BL6NJ_G0036862.1 mouse_genomes_project 10 65859857 65860222 + pseudogene pseudogene MGP_C57BL6NJ_T0003170.1 MGP_C57BL6NJ_G0002954.1 mouse_genomes_project 10 39235514 39269058 - Gm16365 antisense antisense MGP_C57BL6NJ_T0003171.1 MGP_C57BL6NJ_G0002954.1 mouse_genomes_project 10 39237043 39297440 - Gm16365 antisense antisense MGP_C57BL6NJ_T0003172.1 MGP_C57BL6NJ_G0002954.1 mouse_genomes_project 10 39239398 39297444 - Gm16365 antisense antisense MGP_C57BL6NJ_T0003173.1 MGP_C57BL6NJ_G0002954.1 mouse_genomes_project 10 39276408 39297455 - Gm16365 antisense antisense MGP_C57BL6NJ_T0003197.1 MGP_C57BL6NJ_G0002974.1 mouse_genomes_project 10 78891786 78893088 - Gm16220 antisense antisense MGP_C57BL6NJ_T0100951.1 MGP_C57BL6NJ_G0038997.1 mouse_genomes_project 10 20205908 20206017 - Gm23839 snoRNA snoRNA MGP_C57BL6NJ_T0000945.1 MGP_C57BL6NJ_G0000856.1 mouse_genomes_project 10 26523228 26524989 - TEC TEC MGP_C57BL6NJ_T0025296.1 MGP_C57BL6NJ_G0017500.1 mouse_genomes_project 10 25031613 25077873 + MGP_C57BL6NJ_P0025296 Samd3 protein_coding protein_coding MGP_C57BL6NJ_T0025297.1 MGP_C57BL6NJ_G0017500.1 mouse_genomes_project 10 25031613 25064197 + MGP_C57BL6NJ_P0025297 Samd3 protein_coding protein_coding MGP_C57BL6NJ_T0003161.1 MGP_C57BL6NJ_G0002947.1 mouse_genomes_project 10 15824714 15829521 - Gm20655 antisense antisense MGP_C57BL6NJ_T0003162.1 MGP_C57BL6NJ_G0002947.1 mouse_genomes_project 10 15827298 15834114 - Gm20655 antisense antisense MGP_C57BL6NJ_T0025628.1 MGP_C57BL6NJ_G0017617.1 mouse_genomes_project 10 52799822 52961679 - MGP_C57BL6NJ_P0025628 Ros1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025629.1 MGP_C57BL6NJ_G0017617.1 mouse_genomes_project 10 52800027 52961967 - MGP_C57BL6NJ_P0025629 Ros1 protein_coding protein_coding MGP_C57BL6NJ_T0025630.1 MGP_C57BL6NJ_G0017617.1 mouse_genomes_project 10 52800117 52961679 - MGP_C57BL6NJ_P0025630 Ros1 protein_coding protein_coding MGP_C57BL6NJ_T0025631.1 MGP_C57BL6NJ_G0017617.1 mouse_genomes_project 10 52800117 52961679 - MGP_C57BL6NJ_P0025631 Ros1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100994.1 MGP_C57BL6NJ_G0039040.1 mouse_genomes_project 10 117182453 117182575 - Gm22186 snoRNA snoRNA MGP_C57BL6NJ_T0026215.1 MGP_C57BL6NJ_G0017756.1 mouse_genomes_project 10 78514521 78635954 - MGP_C57BL6NJ_P0026215 Cabin1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026216.1 MGP_C57BL6NJ_G0017756.1 mouse_genomes_project 10 78514529 78635991 - MGP_C57BL6NJ_P0026216 Cabin1 protein_coding protein_coding MGP_C57BL6NJ_T0025729.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60983942 61157633 + MGP_C57BL6NJ_P0025729 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025730.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984028 61030713 + Micu1 protein_coding retained_intron MGP_C57BL6NJ_T0025731.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984064 61157631 + MGP_C57BL6NJ_P0025731 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025732.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984083 61157631 + MGP_C57BL6NJ_P0025732 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025733.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984093 61157624 + MGP_C57BL6NJ_P0025733 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025734.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984114 61077876 + MGP_C57BL6NJ_P0025734 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025735.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 60984123 61037522 + Micu1 protein_coding retained_intron MGP_C57BL6NJ_T0025736.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 61025900 61026575 + Micu1 protein_coding processed_transcript MGP_C57BL6NJ_T0025737.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 61026590 61042991 + MGP_C57BL6NJ_P0025737 Micu1 protein_coding protein_coding MGP_C57BL6NJ_T0025738.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 61048229 61077974 + Micu1 protein_coding processed_transcript MGP_C57BL6NJ_T0025739.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 61120031 61137189 + Micu1 protein_coding retained_intron MGP_C57BL6NJ_T0025740.1 MGP_C57BL6NJ_G0017656.1 mouse_genomes_project 10 61152406 61156904 + Micu1 protein_coding retained_intron MGP_C57BL6NJ_T0006286.1 MGP_C57BL6NJ_G0005256.1 mouse_genomes_project 10 93926512 93943939 + 1500026H17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006299.1 MGP_C57BL6NJ_G0005259.1 mouse_genomes_project 10 96586720 96589340 + Gm26700 lincRNA lincRNA MGP_C57BL6NJ_T0027158.1 MGP_C57BL6NJ_G0018017.1 mouse_genomes_project 10 91499228 91502070 - MGP_C57BL6NJ_P0027158 Ascl1 protein_coding protein_coding MGP_C57BL6NJ_T0027876.1 MGP_C57BL6NJ_G0018233.1 mouse_genomes_project 10 135948072 135963579 + MGP_C57BL6NJ_P0027876 Rdh19 protein_coding protein_coding MGP_C57BL6NJ_T0025254.1 MGP_C57BL6NJ_G0017485.1 mouse_genomes_project 10 22727141 22729947 - MGP_C57BL6NJ_P0025254 protein_coding protein_coding MGP_C57BL6NJ_T0025367.1 MGP_C57BL6NJ_G0017525.1 mouse_genomes_project 10 33009633 33024462 - MGP_C57BL6NJ_P0025367 Sult3a2 protein_coding protein_coding MGP_C57BL6NJ_T0025817.1 MGP_C57BL6NJ_G0017676.1 mouse_genomes_project 10 62937195 62959825 - MGP_C57BL6NJ_P0025817 Eif4ebp2 protein_coding protein_coding MGP_C57BL6NJ_T0025251.1 MGP_C57BL6NJ_G0017482.1 mouse_genomes_project 10 22639624 22640701 + MGP_C57BL6NJ_P0025251 Taar7d protein_coding protein_coding MGP_C57BL6NJ_T0025255.1 MGP_C57BL6NJ_G0017486.1 mouse_genomes_project 10 22727141 22728531 - MGP_C57BL6NJ_P0025255 protein_coding protein_coding MGP_C57BL6NJ_T0009764.1 MGP_C57BL6NJ_G0007849.1 mouse_genomes_project 10 23613026 23613096 + Mir6905 miRNA miRNA MGP_C57BL6NJ_T0027947.1 MGP_C57BL6NJ_G0018257.1 mouse_genomes_project 10 136607087 136612378 - MGP_C57BL6NJ_P0027947 Slc39a5 protein_coding protein_coding MGP_C57BL6NJ_T0027948.1 MGP_C57BL6NJ_G0018257.1 mouse_genomes_project 10 136607087 136611620 - MGP_C57BL6NJ_P0027948 Slc39a5 protein_coding protein_coding MGP_C57BL6NJ_T0025612.1 MGP_C57BL6NJ_G0017608.1 mouse_genomes_project 10 51554392 51654994 + MGP_C57BL6NJ_P0025612 Sim1 protein_coding protein_coding MGP_C57BL6NJ_T0025323.1 MGP_C57BL6NJ_G0017506.1 mouse_genomes_project 10 27928382 27944462 - MGP_C57BL6NJ_P0025323 2310057J18Rik protein_coding protein_coding MGP_C57BL6NJ_T0025324.1 MGP_C57BL6NJ_G0017506.1 mouse_genomes_project 10 27928458 27945371 - MGP_C57BL6NJ_P0025324 2310057J18Rik protein_coding protein_coding MGP_C57BL6NJ_T0025325.1 MGP_C57BL6NJ_G0017506.1 mouse_genomes_project 10 27928460 27930284 - 2310057J18Rik protein_coding retained_intron MGP_C57BL6NJ_T0025326.1 MGP_C57BL6NJ_G0017506.1 mouse_genomes_project 10 27928460 27945381 - MGP_C57BL6NJ_P0025326 2310057J18Rik protein_coding protein_coding MGP_C57BL6NJ_T0024984.1 MGP_C57BL6NJ_G0017400.1 mouse_genomes_project 10 5268513 5290159 - MGP_C57BL6NJ_P0024984 Tab2 protein_coding protein_coding MGP_C57BL6NJ_T0024985.1 MGP_C57BL6NJ_G0017400.1 mouse_genomes_project 10 5270195 5273367 - Tab2 protein_coding retained_intron MGP_C57BL6NJ_T0024986.1 MGP_C57BL6NJ_G0017400.1 mouse_genomes_project 10 5270305 5274353 - Tab2 protein_coding retained_intron MGP_C57BL6NJ_T0024987.1 MGP_C57BL6NJ_G0017400.1 mouse_genomes_project 10 5274358 5296075 - MGP_C57BL6NJ_P0024987 Tab2 protein_coding protein_coding MGP_C57BL6NJ_T0026250.1 MGP_C57BL6NJ_G0017771.1 mouse_genomes_project 10 78967892 79033564 - MGP_C57BL6NJ_P0026250 Slc5a4b protein_coding protein_coding MGP_C57BL6NJ_T0099212.1 MGP_C57BL6NJ_G0037276.1 mouse_genomes_project 10 2103548 2103830 - Gm25694 ribozyme ribozyme MGP_C57BL6NJ_T0009785.1 MGP_C57BL6NJ_G0007870.1 mouse_genomes_project 10 80697775 80697859 + Mir1930 miRNA miRNA MGP_C57BL6NJ_T0027566.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122269035 122416358 - MGP_C57BL6NJ_P0027566 Lgr5 protein_coding protein_coding MGP_C57BL6NJ_T0027567.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122270738 122416071 - MGP_C57BL6NJ_P0027567 Lgr5 protein_coding protein_coding MGP_C57BL6NJ_T0027568.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122270738 122416071 - MGP_C57BL6NJ_P0027568 Lgr5 protein_coding protein_coding MGP_C57BL6NJ_T0027569.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122275372 122277724 - Lgr5 protein_coding retained_intron MGP_C57BL6NJ_T0027570.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122276569 122283738 - Lgr5 protein_coding retained_intron MGP_C57BL6NJ_T0027571.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122283331 122416337 - Lgr5 protein_coding retained_intron MGP_C57BL6NJ_T0027572.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122294043 122416337 - Lgr5 protein_coding retained_intron MGP_C57BL6NJ_T0027573.1 MGP_C57BL6NJ_G0018135.1 mouse_genomes_project 10 122346689 122416321 - Lgr5 protein_coding processed_transcript MGP_C57BL6NJ_T0099669.1 MGP_C57BL6NJ_G0037715.1 mouse_genomes_project 10 7610363 7610527 + Gm25682 snRNA snRNA MGP_C57BL6NJ_T0006317.1 MGP_C57BL6NJ_G0005271.1 mouse_genomes_project 10 123624402 123630144 + Gm26579 lincRNA lincRNA MGP_C57BL6NJ_T0102718.1 MGP_C57BL6NJ_G0040513.1 mouse_genomes_project 10 111373066 111373250 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0027770.1 MGP_C57BL6NJ_G0018199.1 mouse_genomes_project 10 135072593 135075538 - MGP_C57BL6NJ_P0027770 Tspan31 protein_coding protein_coding MGP_C57BL6NJ_T0009803.1 MGP_C57BL6NJ_G0007888.1 mouse_genomes_project 10 89111011 89111112 - Gm27392 miRNA miRNA MGP_C57BL6NJ_T0011541.1 MGP_C57BL6NJ_G0009626.1 mouse_genomes_project 10 96556531 96556639 - Gm27366 misc_RNA misc_RNA MGP_C57BL6NJ_T0028088.1 MGP_C57BL6NJ_G0018335.1 mouse_genomes_project 10 138434073 138437780 - MGP_C57BL6NJ_P0028088 protein_coding protein_coding MGP_C57BL6NJ_T0026098.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73877084 73919990 + MGP_C57BL6NJ_P0026098 Ipmk protein_coding protein_coding MGP_C57BL6NJ_T0026099.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73877157 73916105 + MGP_C57BL6NJ_P0026099 Ipmk protein_coding protein_coding MGP_C57BL6NJ_T0026100.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73877157 73916344 + MGP_C57BL6NJ_P0026100 Ipmk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026101.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73877157 73911521 + MGP_C57BL6NJ_P0026101 Ipmk protein_coding protein_coding MGP_C57BL6NJ_T0026102.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73877164 73898150 + Ipmk protein_coding retained_intron MGP_C57BL6NJ_T0026103.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73915853 73971297 + MGP_C57BL6NJ_P0026103 Ipmk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026104.1 MGP_C57BL6NJ_G0017740.1 mouse_genomes_project 10 73943323 73971444 + Ipmk protein_coding processed_transcript MGP_C57BL6NJ_T0003190.1 MGP_C57BL6NJ_G0002968.1 mouse_genomes_project 10 64805156 64807021 - Gm16143 antisense antisense MGP_C57BL6NJ_T0026415.1 MGP_C57BL6NJ_G0017812.1 mouse_genomes_project 10 81270100 81280291 + MGP_C57BL6NJ_P0026415 Icosl protein_coding protein_coding MGP_C57BL6NJ_T0012686.1 MGP_C57BL6NJ_G0010731.1 mouse_genomes_project 10 18730744 18732231 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025980.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69737513 69743614 + MGP_C57BL6NJ_P0025980 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025981.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69737621 69743749 + MGP_C57BL6NJ_P0025981 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025982.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69741236 69745556 + MGP_C57BL6NJ_P0025982 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025983.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69741237 69745556 + MGP_C57BL6NJ_P0025983 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025984.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69741237 69741748 + MGP_C57BL6NJ_P0025984 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025985.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69741297 69743309 + MGP_C57BL6NJ_P0025985 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0025986.1 MGP_C57BL6NJ_G0017719.1 mouse_genomes_project 10 69742050 69745556 + MGP_C57BL6NJ_P0025986 Egr2 protein_coding protein_coding MGP_C57BL6NJ_T0027294.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95462442 95469928 - MGP_C57BL6NJ_P0027294 Slc25a3 protein_coding protein_coding MGP_C57BL6NJ_T0027295.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95462659 95469826 - MGP_C57BL6NJ_P0027295 Slc25a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027296.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95462660 95469872 - MGP_C57BL6NJ_P0027296 Slc25a3 protein_coding protein_coding MGP_C57BL6NJ_T0027297.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95462676 95469824 - MGP_C57BL6NJ_P0027297 Slc25a3 protein_coding protein_coding MGP_C57BL6NJ_T0027298.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95462879 95465706 - Slc25a3 protein_coding retained_intron MGP_C57BL6NJ_T0027299.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95464041 95466594 - Slc25a3 protein_coding processed_transcript MGP_C57BL6NJ_T0027300.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95464067 95468092 - Slc25a3 protein_coding retained_intron MGP_C57BL6NJ_T0027301.1 MGP_C57BL6NJ_G0018043.1 mouse_genomes_project 10 95465643 95469891 - Slc25a3 protein_coding retained_intron MGP_C57BL6NJ_T0026554.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83235703 83251850 - MGP_C57BL6NJ_P0026554 Med16 protein_coding protein_coding MGP_C57BL6NJ_T0026555.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83235930 83251827 - MGP_C57BL6NJ_P0026555 Med16 protein_coding protein_coding MGP_C57BL6NJ_T0026556.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83241164 83242614 - Med16 protein_coding retained_intron MGP_C57BL6NJ_T0026557.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83244766 83251747 - Med16 protein_coding retained_intron MGP_C57BL6NJ_T0026558.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83246107 83251839 - MGP_C57BL6NJ_P0026558 Med16 protein_coding protein_coding MGP_C57BL6NJ_T0026559.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83246283 83251250 - MGP_C57BL6NJ_P0026559 Med16 protein_coding protein_coding MGP_C57BL6NJ_T0026560.1 MGP_C57BL6NJ_G0017862.1 mouse_genomes_project 10 83246310 83251852 - MGP_C57BL6NJ_P0026560 Med16 protein_coding protein_coding MGP_C57BL6NJ_T0027422.1 MGP_C57BL6NJ_G0018080.1 mouse_genomes_project 10 102909357 102911239 - MGP_C57BL6NJ_P0027422 C030005K15Rik protein_coding protein_coding MGP_C57BL6NJ_T0003211.1 MGP_C57BL6NJ_G0002986.1 mouse_genomes_project 10 84708091 84711922 + Atcayos antisense antisense MGP_C57BL6NJ_T0003212.1 MGP_C57BL6NJ_G0002986.1 mouse_genomes_project 10 84708165 84725891 + Atcayos antisense antisense MGP_C57BL6NJ_T0003213.1 MGP_C57BL6NJ_G0002986.1 mouse_genomes_project 10 84708173 84727607 + Atcayos antisense antisense MGP_C57BL6NJ_T0011525.1 MGP_C57BL6NJ_G0009610.1 mouse_genomes_project 10 10766641 10766878 - Gm27741 misc_RNA misc_RNA MGP_C57BL6NJ_T0025946.1 MGP_C57BL6NJ_G0017709.1 mouse_genomes_project 10 64868983 64964940 - MGP_C57BL6NJ_P0025946 Mypn protein_coding protein_coding MGP_C57BL6NJ_T0026484.1 MGP_C57BL6NJ_G0017845.1 mouse_genomes_project 10 82978728 82985437 + MGP_C57BL6NJ_P0026484 Tpgs1 protein_coding protein_coding MGP_C57BL6NJ_T0027387.1 MGP_C57BL6NJ_G0018064.1 mouse_genomes_project 10 99381343 99488363 + MGP_C57BL6NJ_P0027387 Cep83 protein_coding protein_coding MGP_C57BL6NJ_T0027388.1 MGP_C57BL6NJ_G0018064.1 mouse_genomes_project 10 99410783 99487835 + MGP_C57BL6NJ_P0027388 Cep83 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099214.1 MGP_C57BL6NJ_G0037278.1 mouse_genomes_project 10 42818344 42818649 - Gm26464 ribozyme ribozyme MGP_C57BL6NJ_T0026508.1 MGP_C57BL6NJ_G0017852.1 mouse_genomes_project 10 83075660 83084099 - MGP_C57BL6NJ_P0026508 Rnf126 protein_coding protein_coding MGP_C57BL6NJ_T0099707.1 MGP_C57BL6NJ_G0037753.1 mouse_genomes_project 10 89941054 89941158 - Gm24430 snRNA snRNA MGP_C57BL6NJ_T0025374.1 MGP_C57BL6NJ_G0017531.1 mouse_genomes_project 10 33294150 33369389 + MGP_C57BL6NJ_P0025374 Trappc3l protein_coding protein_coding MGP_C57BL6NJ_T0027870.1 MGP_C57BL6NJ_G0018230.1 mouse_genomes_project 10 135838594 135876056 + MGP_C57BL6NJ_P0027870 protein_coding protein_coding MGP_C57BL6NJ_T0025705.1 MGP_C57BL6NJ_G0017644.1 mouse_genomes_project 10 59701207 59793048 + MGP_C57BL6NJ_P0025705 Ccdc138 protein_coding protein_coding MGP_C57BL6NJ_T0026245.1 MGP_C57BL6NJ_G0017768.1 mouse_genomes_project 10 78837938 78844269 + MGP_C57BL6NJ_P0026245 Vpreb3 protein_coding protein_coding MGP_C57BL6NJ_T0026246.1 MGP_C57BL6NJ_G0017768.1 mouse_genomes_project 10 78842931 78844289 + MGP_C57BL6NJ_P0026246 Vpreb3 protein_coding protein_coding MGP_C57BL6NJ_T0025934.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64753067 64762206 - MGP_C57BL6NJ_P0025934 Hnrnph3 protein_coding protein_coding MGP_C57BL6NJ_T0025935.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64753067 64762206 - MGP_C57BL6NJ_P0025935 Hnrnph3 protein_coding protein_coding MGP_C57BL6NJ_T0025936.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64753831 64762529 - MGP_C57BL6NJ_P0025936 Hnrnph3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025937.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64753834 64754572 - Hnrnph3 protein_coding retained_intron MGP_C57BL6NJ_T0025938.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64754821 64756488 - Hnrnph3 protein_coding retained_intron MGP_C57BL6NJ_T0025939.1 MGP_C57BL6NJ_G0017706.1 mouse_genomes_project 10 64756210 64762159 - MGP_C57BL6NJ_P0025939 Hnrnph3 protein_coding protein_coding MGP_C57BL6NJ_T0009767.1 MGP_C57BL6NJ_G0007852.1 mouse_genomes_project 10 27133595 27133678 - Gm22370 miRNA miRNA MGP_C57BL6NJ_T0098950.1 MGP_C57BL6NJ_G0037014.1 mouse_genomes_project 10 81531342 81531461 + n-R5s77 rRNA rRNA MGP_C57BL6NJ_T0025234.1 MGP_C57BL6NJ_G0017470.1 mouse_genomes_project 10 22346885 22348870 - MGP_C57BL6NJ_P0025234 Rps12 protein_coding protein_coding MGP_C57BL6NJ_T0009826.1 MGP_C57BL6NJ_G0007911.1 mouse_genomes_project 10 130592976 130593061 - Mirlet7i miRNA miRNA MGP_C57BL6NJ_T0025625.1 MGP_C57BL6NJ_G0017615.1 mouse_genomes_project 10 52496976 52497998 - MGP_C57BL6NJ_P0025625 4933411G06Rik protein_coding protein_coding MGP_C57BL6NJ_T0027519.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024184 117026806 + E2f7 protein_coding processed_transcript MGP_C57BL6NJ_T0027520.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024210 117035085 + MGP_C57BL6NJ_P0027520 E2f7 protein_coding protein_coding MGP_C57BL6NJ_T0027521.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024213 117046604 + E2f7 protein_coding retained_intron MGP_C57BL6NJ_T0027522.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024213 117072178 + MGP_C57BL6NJ_P0027522 E2f7 protein_coding protein_coding MGP_C57BL6NJ_T0027523.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024258 117070304 + MGP_C57BL6NJ_P0027523 E2f7 protein_coding protein_coding MGP_C57BL6NJ_T0027524.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117024317 117033025 + MGP_C57BL6NJ_P0027524 E2f7 protein_coding protein_coding MGP_C57BL6NJ_T0027525.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117032709 117034695 + E2f7 protein_coding processed_transcript MGP_C57BL6NJ_T0027526.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117032779 117053117 + MGP_C57BL6NJ_P0027526 E2f7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027527.1 MGP_C57BL6NJ_G0018114.1 mouse_genomes_project 10 117042320 117044219 + E2f7 protein_coding retained_intron MGP_C57BL6NJ_T0028032.1 MGP_C57BL6NJ_G0018294.1 mouse_genomes_project 10 137481949 137482903 - MGP_C57BL6NJ_P0028032 Olfr771 protein_coding protein_coding MGP_C57BL6NJ_T0025668.1 MGP_C57BL6NJ_G0017635.1 mouse_genomes_project 10 58664834 58681782 - MGP_C57BL6NJ_P0025668 Serinc1 protein_coding protein_coding MGP_C57BL6NJ_T0025669.1 MGP_C57BL6NJ_G0017635.1 mouse_genomes_project 10 58672095 58681680 - MGP_C57BL6NJ_P0025669 Serinc1 protein_coding protein_coding MGP_C57BL6NJ_T0025670.1 MGP_C57BL6NJ_G0017635.1 mouse_genomes_project 10 58672244 58681662 - MGP_C57BL6NJ_P0025670 Serinc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025671.1 MGP_C57BL6NJ_G0017635.1 mouse_genomes_project 10 58674278 58681729 - Serinc1 protein_coding retained_intron MGP_C57BL6NJ_T0025672.1 MGP_C57BL6NJ_G0017635.1 mouse_genomes_project 10 58674284 58681661 - Serinc1 protein_coding retained_intron MGP_C57BL6NJ_T0026407.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81238455 81242227 + Dnmt3l protein_coding processed_transcript MGP_C57BL6NJ_T0026408.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81238795 81262344 + MGP_C57BL6NJ_P0026408 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0026409.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81246362 81262344 + MGP_C57BL6NJ_P0026409 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0026410.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81246479 81262338 + MGP_C57BL6NJ_P0026410 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0026411.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81251339 81254997 + Dnmt3l protein_coding retained_intron MGP_C57BL6NJ_T0026412.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81251839 81262337 + MGP_C57BL6NJ_P0026412 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0026413.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81251839 81262337 + MGP_C57BL6NJ_P0026413 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0026414.1 MGP_C57BL6NJ_G0017811.1 mouse_genomes_project 10 81251839 81262337 + MGP_C57BL6NJ_P0026414 Dnmt3l protein_coding protein_coding MGP_C57BL6NJ_T0000954.1 MGP_C57BL6NJ_G0000865.1 mouse_genomes_project 10 91287728 91290062 + TEC TEC MGP_C57BL6NJ_T0000955.1 MGP_C57BL6NJ_G0000865.1 mouse_genomes_project 10 91288968 91289346 + TEC TEC MGP_C57BL6NJ_T0026791.1 MGP_C57BL6NJ_G0017917.1 mouse_genomes_project 10 84290820 84302053 - MGP_C57BL6NJ_P0026791 Lingo3 protein_coding protein_coding MGP_C57BL6NJ_T0025385.1 MGP_C57BL6NJ_G0017539.1 mouse_genomes_project 10 33678549 33685616 + MGP_C57BL6NJ_P0025385 Col10a1 protein_coding protein_coding MGP_C57BL6NJ_T0026303.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80016118 80026421 + MGP_C57BL6NJ_P0026303 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026304.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80016148 80025907 + MGP_C57BL6NJ_P0026304 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026305.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80016561 80034492 + MGP_C57BL6NJ_P0026305 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026306.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80017089 80034491 + MGP_C57BL6NJ_P0026306 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026307.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80017145 80030328 + MGP_C57BL6NJ_P0026307 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026308.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80017158 80027016 + MGP_C57BL6NJ_P0026308 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026309.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80017196 80026390 + MGP_C57BL6NJ_P0026309 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026310.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80026559 80028958 + Slc19a1 protein_coding retained_intron MGP_C57BL6NJ_T0026311.1 MGP_C57BL6NJ_G0017787.1 mouse_genomes_project 10 80026850 80045232 + MGP_C57BL6NJ_P0026311 Slc19a1 protein_coding protein_coding MGP_C57BL6NJ_T0026361.1 MGP_C57BL6NJ_G0017798.1 mouse_genomes_project 10 80800928 80801261 + MGP_C57BL6NJ_P0026361 Gm10272 protein_coding protein_coding MGP_C57BL6NJ_T0027580.1 MGP_C57BL6NJ_G0018139.1 mouse_genomes_project 10 123004147 123006401 - MGP_C57BL6NJ_P0027580 4933416C03Rik protein_coding protein_coding MGP_C57BL6NJ_T0012733.1 MGP_C57BL6NJ_G0010778.1 mouse_genomes_project 10 109335576 109336572 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027186.1 MGP_C57BL6NJ_G0018024.1 mouse_genomes_project 10 92405807 92442517 - MGP_C57BL6NJ_P0027186 Dram1 protein_coding protein_coding MGP_C57BL6NJ_T0027187.1 MGP_C57BL6NJ_G0018024.1 mouse_genomes_project 10 92405807 92442438 - MGP_C57BL6NJ_P0027187 Dram1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027188.1 MGP_C57BL6NJ_G0018024.1 mouse_genomes_project 10 92424661 92474920 - MGP_C57BL6NJ_P0027188 Dram1 protein_coding protein_coding MGP_C57BL6NJ_T0024870.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461386 1485085 + MGP_C57BL6NJ_P0024870 Armt1 protein_coding protein_coding MGP_C57BL6NJ_T0024871.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461386 1485086 + MGP_C57BL6NJ_P0024871 Armt1 protein_coding protein_coding MGP_C57BL6NJ_T0024872.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461457 1468697 + MGP_C57BL6NJ_P0024872 Armt1 protein_coding protein_coding MGP_C57BL6NJ_T0024873.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461464 1480395 + Armt1 protein_coding processed_transcript MGP_C57BL6NJ_T0024874.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461472 1463898 + Armt1 protein_coding retained_intron MGP_C57BL6NJ_T0024875.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1461477 1483903 + MGP_C57BL6NJ_P0024875 Armt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024876.1 MGP_C57BL6NJ_G0017378.1 mouse_genomes_project 10 1463304 1469193 + Armt1 protein_coding processed_transcript MGP_C57BL6NJ_T0027019.1 MGP_C57BL6NJ_G0017976.1 mouse_genomes_project 10 86261650 86283210 - MGP_C57BL6NJ_P0027019 1190007I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0027020.1 MGP_C57BL6NJ_G0017976.1 mouse_genomes_project 10 86261650 86282940 - MGP_C57BL6NJ_P0027020 1190007I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0027021.1 MGP_C57BL6NJ_G0017976.1 mouse_genomes_project 10 86261741 86283242 - MGP_C57BL6NJ_P0027021 1190007I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0027022.1 MGP_C57BL6NJ_G0017976.1 mouse_genomes_project 10 86261825 86283204 - MGP_C57BL6NJ_P0027022 1190007I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0027023.1 MGP_C57BL6NJ_G0017976.1 mouse_genomes_project 10 86282374 86283151 - MGP_C57BL6NJ_P0027023 1190007I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0012700.1 MGP_C57BL6NJ_G0010745.1 mouse_genomes_project 10 30783236 30784539 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026318.1 MGP_C57BL6NJ_G0017790.1 mouse_genomes_project 10 80285793 80296080 + MGP_C57BL6NJ_P0026318 Pofut2 protein_coding protein_coding MGP_C57BL6NJ_T0025782.1 MGP_C57BL6NJ_G0017666.1 mouse_genomes_project 10 61766822 61770649 + MGP_C57BL6NJ_P0025782 Gm17455 protein_coding protein_coding MGP_C57BL6NJ_T0025243.1 MGP_C57BL6NJ_G0017474.1 mouse_genomes_project 10 22504495 22505609 + MGP_C57BL6NJ_P0025243 Taar1 protein_coding protein_coding MGP_C57BL6NJ_T0099717.1 MGP_C57BL6NJ_G0037763.1 mouse_genomes_project 10 110249451 110249608 - Gm22945 snRNA snRNA MGP_C57BL6NJ_T0027685.1 MGP_C57BL6NJ_G0018168.1 mouse_genomes_project 10 127554818 127562444 + MGP_C57BL6NJ_P0027685 Llph protein_coding protein_coding MGP_C57BL6NJ_T0027686.1 MGP_C57BL6NJ_G0018168.1 mouse_genomes_project 10 127554934 127559042 + MGP_C57BL6NJ_P0027686 Llph protein_coding protein_coding MGP_C57BL6NJ_T0000950.1 MGP_C57BL6NJ_G0000861.1 mouse_genomes_project 10 79964094 79964772 - TEC TEC MGP_C57BL6NJ_T0027715.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129637333 129663492 - MGP_C57BL6NJ_P0027715 Tmem5 protein_coding protein_coding MGP_C57BL6NJ_T0027716.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129640459 129663277 - MGP_C57BL6NJ_P0027716 Tmem5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027717.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129640881 129651991 - Tmem5 protein_coding retained_intron MGP_C57BL6NJ_T0027718.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129651246 129653307 - Tmem5 protein_coding retained_intron MGP_C57BL6NJ_T0027719.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129651623 129658738 - Tmem5 protein_coding retained_intron MGP_C57BL6NJ_T0027720.1 MGP_C57BL6NJ_G0018182.1 mouse_genomes_project 10 129658657 129663247 - Tmem5 protein_coding processed_transcript MGP_C57BL6NJ_T0027116.1 MGP_C57BL6NJ_G0018004.1 mouse_genomes_project 10 89821933 89823937 + MGP_C57BL6NJ_P0027116 Ascl4 protein_coding protein_coding MGP_C57BL6NJ_T0027117.1 MGP_C57BL6NJ_G0018004.1 mouse_genomes_project 10 89823026 89845763 + MGP_C57BL6NJ_P0027117 Ascl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027435.1 MGP_C57BL6NJ_G0018087.1 mouse_genomes_project 10 105130518 105132472 - MGP_C57BL6NJ_P0027435 Csl protein_coding protein_coding MGP_C57BL6NJ_T0003209.1 MGP_C57BL6NJ_G0002985.1 mouse_genomes_project 10 84500743 84502206 + Gm16099 antisense antisense MGP_C57BL6NJ_T0003210.1 MGP_C57BL6NJ_G0002985.1 mouse_genomes_project 10 84501015 84502500 + Gm16099 antisense antisense MGP_C57BL6NJ_T0025376.1 MGP_C57BL6NJ_G0017533.1 mouse_genomes_project 10 33351016 33356184 - MGP_C57BL6NJ_P0025376 Fam26e protein_coding protein_coding MGP_C57BL6NJ_T0012688.1 MGP_C57BL6NJ_G0010733.1 mouse_genomes_project 10 20394273 20395145 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025138.1 MGP_C57BL6NJ_G0017439.1 mouse_genomes_project 10 16874251 16879394 - MGP_C57BL6NJ_P0025138 Gm4922 protein_coding protein_coding MGP_C57BL6NJ_T0026367.1 MGP_C57BL6NJ_G0017804.1 mouse_genomes_project 10 80974635 80975616 - MGP_C57BL6NJ_P0026367 Krtap10-4 protein_coding protein_coding MGP_C57BL6NJ_T0102148.1 MGP_C57BL6NJ_G0040180.1 mouse_genomes_project 10 124657439 124658002 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0026452.1 MGP_C57BL6NJ_G0017832.1 mouse_genomes_project 10 82308623 82314357 + MGP_C57BL6NJ_P0026452 Olfr1351 protein_coding protein_coding MGP_C57BL6NJ_T0026453.1 MGP_C57BL6NJ_G0017832.1 mouse_genomes_project 10 82313397 82314357 + MGP_C57BL6NJ_P0026453 Olfr1351 protein_coding protein_coding MGP_C57BL6NJ_T0100982.1 MGP_C57BL6NJ_G0039028.1 mouse_genomes_project 10 95464159 95464405 - Gm24119 snoRNA snoRNA MGP_C57BL6NJ_T0025342.1 MGP_C57BL6NJ_G0017515.1 mouse_genomes_project 10 29673778 29686622 - MGP_C57BL6NJ_P0025342 Hint3 protein_coding protein_coding MGP_C57BL6NJ_T0025343.1 MGP_C57BL6NJ_G0017515.1 mouse_genomes_project 10 29673986 29686476 - MGP_C57BL6NJ_P0025343 Hint3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025344.1 MGP_C57BL6NJ_G0017515.1 mouse_genomes_project 10 29674020 29686480 - MGP_C57BL6NJ_P0025344 Hint3 protein_coding protein_coding MGP_C57BL6NJ_T0026419.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81486354 81573211 - MGP_C57BL6NJ_P0026419 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026420.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81488739 81572634 - MGP_C57BL6NJ_P0026420 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026421.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81488739 81515375 - MGP_C57BL6NJ_P0026421 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026422.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81488739 81572822 - MGP_C57BL6NJ_P0026422 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026423.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81488739 81572469 - MGP_C57BL6NJ_P0026423 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026424.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81490787 81512571 - MGP_C57BL6NJ_P0026424 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026425.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81490790 81495613 - Agpat3 protein_coding retained_intron MGP_C57BL6NJ_T0026426.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81501443 81538549 - MGP_C57BL6NJ_P0026426 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026427.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81501489 81524727 - MGP_C57BL6NJ_P0026427 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026428.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81505031 81573258 - MGP_C57BL6NJ_P0026428 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0026429.1 MGP_C57BL6NJ_G0017816.1 mouse_genomes_project 10 81505042 81572981 - MGP_C57BL6NJ_P0026429 Agpat3 protein_coding protein_coding MGP_C57BL6NJ_T0099719.1 MGP_C57BL6NJ_G0037765.1 mouse_genomes_project 10 110854347 110854513 + Gm25587 snRNA snRNA MGP_C57BL6NJ_T0099680.1 MGP_C57BL6NJ_G0037726.1 mouse_genomes_project 10 38250022 38250129 - Gm22911 snRNA snRNA MGP_C57BL6NJ_T0026774.1 MGP_C57BL6NJ_G0017912.1 mouse_genomes_project 10 84252747 84255271 - MGP_C57BL6NJ_P0026774 Plekhj1 protein_coding protein_coding MGP_C57BL6NJ_T0000964.1 MGP_C57BL6NJ_G0000874.1 mouse_genomes_project 10 125137870 125138220 + TEC TEC MGP_C57BL6NJ_T0000947.1 MGP_C57BL6NJ_G0000858.1 mouse_genomes_project 10 39973196 39976421 - TEC TEC MGP_C57BL6NJ_T0027775.1 MGP_C57BL6NJ_G0018203.1 mouse_genomes_project 10 135190227 135198612 - MGP_C57BL6NJ_P0027775 Slc26a10 protein_coding protein_coding MGP_C57BL6NJ_T0027776.1 MGP_C57BL6NJ_G0018203.1 mouse_genomes_project 10 135190339 135197700 - MGP_C57BL6NJ_P0027776 Slc26a10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006327.1 MGP_C57BL6NJ_G0005278.1 mouse_genomes_project 10 136721793 136726678 + A430046D13Rik lincRNA lincRNA MGP_C57BL6NJ_T0099665.1 MGP_C57BL6NJ_G0037711.1 mouse_genomes_project 10 1062810 1062967 + Gm25515 snRNA snRNA MGP_C57BL6NJ_T0102717.1 MGP_C57BL6NJ_G0040512.1 mouse_genomes_project 10 111064627 111064786 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0027051.1 MGP_C57BL6NJ_G0017983.1 mouse_genomes_project 10 86675680 86907076 + MGP_C57BL6NJ_P0027051 Chst11 protein_coding protein_coding MGP_C57BL6NJ_T0026362.1 MGP_C57BL6NJ_G0017799.1 mouse_genomes_project 10 80805753 80806306 + MGP_C57BL6NJ_P0026362 Gm10024 protein_coding protein_coding MGP_C57BL6NJ_T0009814.1 MGP_C57BL6NJ_G0007899.1 mouse_genomes_project 10 101966407 101966496 - Gm24587 miRNA miRNA MGP_C57BL6NJ_T0100954.1 MGP_C57BL6NJ_G0039000.1 mouse_genomes_project 10 22348144 22348218 - Gm23130 snoRNA snoRNA MGP_C57BL6NJ_T0098949.1 MGP_C57BL6NJ_G0037013.1 mouse_genomes_project 10 44848018 44848129 + Gm27977 rRNA rRNA MGP_C57BL6NJ_T0024979.1 MGP_C57BL6NJ_G0017398.1 mouse_genomes_project 10 5134169 5172882 + MGP_C57BL6NJ_P0024979 Ppil4 protein_coding protein_coding MGP_C57BL6NJ_T0024980.1 MGP_C57BL6NJ_G0017398.1 mouse_genomes_project 10 5134186 5157118 + Ppil4 protein_coding retained_intron MGP_C57BL6NJ_T0024981.1 MGP_C57BL6NJ_G0017398.1 mouse_genomes_project 10 5134199 5162620 + MGP_C57BL6NJ_P0024981 Ppil4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0024982.1 MGP_C57BL6NJ_G0017398.1 mouse_genomes_project 10 5148192 5155146 + Ppil4 protein_coding retained_intron MGP_C57BL6NJ_T0009771.1 MGP_C57BL6NJ_G0007856.1 mouse_genomes_project 10 45314003 45314083 - Gm23766 miRNA miRNA MGP_C57BL6NJ_T0099715.1 MGP_C57BL6NJ_G0037761.1 mouse_genomes_project 10 109724463 109724572 + Gm25143 snRNA snRNA MGP_C57BL6NJ_T0027249.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94139508 95303562 + MGP_C57BL6NJ_P0027249 protein_coding protein_coding MGP_C57BL6NJ_T0027250.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94139537 94815955 + MGP_C57BL6NJ_P0027250 protein_coding protein_coding MGP_C57BL6NJ_T0027251.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94139637 95299735 + MGP_C57BL6NJ_P0027251 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027252.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94139671 94998240 + MGP_C57BL6NJ_P0027252 protein_coding protein_coding MGP_C57BL6NJ_T0027253.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94261124 94306280 + protein_coding processed_transcript MGP_C57BL6NJ_T0027254.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94320485 94345358 + protein_coding processed_transcript MGP_C57BL6NJ_T0027255.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94345390 94353654 + MGP_C57BL6NJ_P0027255 protein_coding protein_coding MGP_C57BL6NJ_T0027256.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94883790 95306643 + MGP_C57BL6NJ_P0027256 protein_coding protein_coding MGP_C57BL6NJ_T0027257.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884315 95250752 + MGP_C57BL6NJ_P0027257 protein_coding protein_coding MGP_C57BL6NJ_T0027258.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884440 95303601 + MGP_C57BL6NJ_P0027258 protein_coding protein_coding MGP_C57BL6NJ_T0027259.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884580 95304802 + MGP_C57BL6NJ_P0027259 protein_coding protein_coding MGP_C57BL6NJ_T0027260.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884633 95305045 + MGP_C57BL6NJ_P0027260 protein_coding protein_coding MGP_C57BL6NJ_T0027261.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884675 95303555 + MGP_C57BL6NJ_P0027261 protein_coding protein_coding MGP_C57BL6NJ_T0027262.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884754 95304207 + MGP_C57BL6NJ_P0027262 protein_coding protein_coding MGP_C57BL6NJ_T0027263.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884781 95305007 + MGP_C57BL6NJ_P0027263 protein_coding protein_coding MGP_C57BL6NJ_T0027264.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884799 95305045 + MGP_C57BL6NJ_P0027264 protein_coding protein_coding MGP_C57BL6NJ_T0027265.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884812 94910749 + protein_coding processed_transcript MGP_C57BL6NJ_T0027266.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884813 94896835 + MGP_C57BL6NJ_P0027266 protein_coding protein_coding MGP_C57BL6NJ_T0027267.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884829 94896982 + MGP_C57BL6NJ_P0027267 protein_coding protein_coding MGP_C57BL6NJ_T0027268.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884864 95304322 + MGP_C57BL6NJ_P0027268 protein_coding protein_coding MGP_C57BL6NJ_T0027269.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94884878 95305334 + MGP_C57BL6NJ_P0027269 protein_coding protein_coding MGP_C57BL6NJ_T0027270.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94885028 95303562 + MGP_C57BL6NJ_P0027270 protein_coding protein_coding MGP_C57BL6NJ_T0027271.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 94885055 95303163 + MGP_C57BL6NJ_P0027271 protein_coding protein_coding MGP_C57BL6NJ_T0027272.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95153277 95225514 + protein_coding processed_transcript MGP_C57BL6NJ_T0027273.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95153850 95303555 + MGP_C57BL6NJ_P0027273 protein_coding protein_coding MGP_C57BL6NJ_T0027274.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95153982 95304800 + MGP_C57BL6NJ_P0027274 protein_coding protein_coding MGP_C57BL6NJ_T0027275.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95155322 95304627 + MGP_C57BL6NJ_P0027275 protein_coding protein_coding MGP_C57BL6NJ_T0027276.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95155360 95242966 + protein_coding processed_transcript MGP_C57BL6NJ_T0027277.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95155384 95250777 + protein_coding processed_transcript MGP_C57BL6NJ_T0027278.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95223283 95253169 + MGP_C57BL6NJ_P0027278 protein_coding protein_coding MGP_C57BL6NJ_T0027279.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95223294 95304800 + MGP_C57BL6NJ_P0027279 protein_coding protein_coding MGP_C57BL6NJ_T0027280.1 MGP_C57BL6NJ_G0018040.1 mouse_genomes_project 10 95223374 95303435 + MGP_C57BL6NJ_P0027280 protein_coding protein_coding MGP_C57BL6NJ_T0026670.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83647605 83682801 + MGP_C57BL6NJ_P0026670 Dazap1 protein_coding protein_coding MGP_C57BL6NJ_T0026671.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83652682 83690138 + MGP_C57BL6NJ_P0026671 Dazap1 protein_coding protein_coding MGP_C57BL6NJ_T0026672.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83652714 83689623 + MGP_C57BL6NJ_P0026672 Dazap1 protein_coding protein_coding MGP_C57BL6NJ_T0026673.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83652772 83690138 + MGP_C57BL6NJ_P0026673 Dazap1 protein_coding protein_coding MGP_C57BL6NJ_T0026674.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83652822 83680210 + Dazap1 protein_coding processed_transcript MGP_C57BL6NJ_T0026675.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83682218 83687231 + Dazap1 protein_coding retained_intron MGP_C57BL6NJ_T0026676.1 MGP_C57BL6NJ_G0017886.1 mouse_genomes_project 10 83684662 83686317 + Dazap1 protein_coding retained_intron MGP_C57BL6NJ_T0026366.1 MGP_C57BL6NJ_G0017803.1 mouse_genomes_project 10 80869669 80870882 - MGP_C57BL6NJ_P0026366 Gm3238 protein_coding protein_coding MGP_C57BL6NJ_T0026743.1 MGP_C57BL6NJ_G0017901.1 mouse_genomes_project 10 84000285 84010479 - MGP_C57BL6NJ_P0026743 Klf16 protein_coding protein_coding MGP_C57BL6NJ_T0027688.1 MGP_C57BL6NJ_G0018170.1 mouse_genomes_project 10 128171671 128186033 + MGP_C57BL6NJ_P0027688 4921513I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0009808.1 MGP_C57BL6NJ_G0007893.1 mouse_genomes_project 10 97032615 97032709 + Gm22582 miRNA miRNA MGP_C57BL6NJ_T0025802.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62617042 62637259 + MGP_C57BL6NJ_P0025802 Tbata protein_coding protein_coding MGP_C57BL6NJ_T0025803.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62617052 62627062 + MGP_C57BL6NJ_P0025803 Tbata protein_coding protein_coding MGP_C57BL6NJ_T0025804.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62617074 62637264 + MGP_C57BL6NJ_P0025804 Tbata protein_coding protein_coding MGP_C57BL6NJ_T0025805.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62619458 62631878 + MGP_C57BL6NJ_P0025805 Tbata protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025806.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62620350 62627059 + Tbata protein_coding processed_transcript MGP_C57BL6NJ_T0025807.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62620350 62627059 + Tbata protein_coding processed_transcript MGP_C57BL6NJ_T0025808.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62620350 62627059 + Tbata protein_coding processed_transcript MGP_C57BL6NJ_T0025809.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62620350 62627058 + MGP_C57BL6NJ_P0025809 Tbata protein_coding protein_coding MGP_C57BL6NJ_T0025810.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62620476 62627059 + Tbata protein_coding processed_transcript MGP_C57BL6NJ_T0025811.1 MGP_C57BL6NJ_G0017671.1 mouse_genomes_project 10 62621025 62637262 + MGP_C57BL6NJ_P0025811 Tbata protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026174.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78180573 78374771 - MGP_C57BL6NJ_P0026174 Gucd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026178.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78255286 78368779 - MGP_C57BL6NJ_P0026178 Gucd1 protein_coding protein_coding MGP_C57BL6NJ_T0026180.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78364310 78374694 - MGP_C57BL6NJ_P0026180 Gucd1 protein_coding protein_coding MGP_C57BL6NJ_T0026181.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78366295 78374787 - MGP_C57BL6NJ_P0026181 Gucd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026182.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78366329 78368762 - Gucd1 protein_coding retained_intron MGP_C57BL6NJ_T0026183.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78366462 78374668 - MGP_C57BL6NJ_P0026183 Gucd1 protein_coding protein_coding MGP_C57BL6NJ_T0026184.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78367214 78377122 - MGP_C57BL6NJ_P0026184 Gucd1 protein_coding protein_coding MGP_C57BL6NJ_T0026185.1 MGP_C57BL6NJ_G0017749.1 mouse_genomes_project 10 78368677 78374758 - MGP_C57BL6NJ_P0026185 Gucd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026784.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84284458 84287304 + MGP_C57BL6NJ_P0026784 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0026785.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84284484 84287298 + Oaz1 protein_coding retained_intron MGP_C57BL6NJ_T0026786.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84284485 84286863 + MGP_C57BL6NJ_P0026786 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0026787.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84284488 84287304 + MGP_C57BL6NJ_P0026787 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0026788.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84284495 84286911 + MGP_C57BL6NJ_P0026788 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0026789.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84285514 84286883 + MGP_C57BL6NJ_P0026789 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0026790.1 MGP_C57BL6NJ_G0017916.1 mouse_genomes_project 10 84286395 84287299 + MGP_C57BL6NJ_P0026790 Oaz1 protein_coding protein_coding MGP_C57BL6NJ_T0027050.1 MGP_C57BL6NJ_G0017982.1 mouse_genomes_project 10 86642291 86642948 + MGP_C57BL6NJ_P0027050 Gm4799 protein_coding protein_coding MGP_C57BL6NJ_T0025183.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18595512 18942529 - MGP_C57BL6NJ_P0025183 Pde7b protein_coding protein_coding MGP_C57BL6NJ_T0025184.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18596436 18760055 - MGP_C57BL6NJ_P0025184 Pde7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025185.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18597926 18942147 - MGP_C57BL6NJ_P0025185 Pde7b protein_coding protein_coding MGP_C57BL6NJ_T0025186.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18597926 18760055 - MGP_C57BL6NJ_P0025186 Pde7b protein_coding protein_coding MGP_C57BL6NJ_T0025187.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18604529 18760197 - MGP_C57BL6NJ_P0025187 Pde7b protein_coding protein_coding MGP_C57BL6NJ_T0025188.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18686075 18942483 - Pde7b protein_coding retained_intron MGP_C57BL6NJ_T0025189.1 MGP_C57BL6NJ_G0017454.1 mouse_genomes_project 10 18832919 18942483 - Pde7b protein_coding retained_intron MGP_C57BL6NJ_T0027809.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135423728 135499592 + MGP_C57BL6NJ_P0027809 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027810.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135424063 135560602 + MGP_C57BL6NJ_P0027810 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027811.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135424200 135499533 + MGP_C57BL6NJ_P0027811 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027812.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135438237 135560625 + MGP_C57BL6NJ_P0027812 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027813.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135438237 135560625 + MGP_C57BL6NJ_P0027813 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027814.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135472561 135508247 + MGP_C57BL6NJ_P0027814 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027815.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135473090 135560591 + MGP_C57BL6NJ_P0027815 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027816.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135473347 135560273 + MGP_C57BL6NJ_P0027816 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027817.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135473455 135509012 + MGP_C57BL6NJ_P0027817 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027818.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135499511 135560626 + MGP_C57BL6NJ_P0027818 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027819.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135499511 135559951 + MGP_C57BL6NJ_P0027819 R3hdm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027820.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135499511 135559951 + MGP_C57BL6NJ_P0027820 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027821.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135499511 135560609 + MGP_C57BL6NJ_P0027821 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027822.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135515687 135521405 + MGP_C57BL6NJ_P0027822 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027823.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135515713 135521535 + R3hdm2 protein_coding retained_intron MGP_C57BL6NJ_T0027824.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135515717 135560625 + MGP_C57BL6NJ_P0027824 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027825.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135515757 135541465 + R3hdm2 protein_coding processed_transcript MGP_C57BL6NJ_T0027826.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135538625 135541856 + R3hdm2 protein_coding retained_intron MGP_C57BL6NJ_T0027827.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135542602 135551644 + R3hdm2 protein_coding retained_intron MGP_C57BL6NJ_T0027828.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135542793 135553923 + MGP_C57BL6NJ_P0027828 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027829.1 MGP_C57BL6NJ_G0018216.1 mouse_genomes_project 10 135551576 135560609 + MGP_C57BL6NJ_P0027829 R3hdm2 protein_coding protein_coding MGP_C57BL6NJ_T0100984.1 MGP_C57BL6NJ_G0039030.1 mouse_genomes_project 10 98522585 98522753 - Gm25962 snoRNA snoRNA MGP_C57BL6NJ_T0025458.1 MGP_C57BL6NJ_G0017560.1 mouse_genomes_project 10 40048970 40069505 - MGP_C57BL6NJ_P0025458 protein_coding protein_coding MGP_C57BL6NJ_T0026233.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78790907 78815272 - MGP_C57BL6NJ_P0026233 Smarcb1 protein_coding protein_coding MGP_C57BL6NJ_T0026234.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78790911 78807877 - Smarcb1 protein_coding retained_intron MGP_C57BL6NJ_T0026235.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78790913 78810230 - Smarcb1 protein_coding retained_intron MGP_C57BL6NJ_T0026236.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78790915 78815269 - MGP_C57BL6NJ_P0026236 Smarcb1 protein_coding protein_coding MGP_C57BL6NJ_T0026237.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78791666 78815244 - MGP_C57BL6NJ_P0026237 Smarcb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026238.1 MGP_C57BL6NJ_G0017765.1 mouse_genomes_project 10 78803982 78808822 - MGP_C57BL6NJ_P0026238 Smarcb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028069.1 MGP_C57BL6NJ_G0018321.1 mouse_genomes_project 10 138154520 138158411 - MGP_C57BL6NJ_P0028069 Olfr806 protein_coding protein_coding MGP_C57BL6NJ_T0028070.1 MGP_C57BL6NJ_G0018321.1 mouse_genomes_project 10 138154520 138155462 - MGP_C57BL6NJ_P0028070 Olfr806 protein_coding protein_coding MGP_C57BL6NJ_T0025258.1 MGP_C57BL6NJ_G0017489.1 mouse_genomes_project 10 22875090 22957658 + MGP_C57BL6NJ_P0025258 Moxd1 protein_coding protein_coding MGP_C57BL6NJ_T0025259.1 MGP_C57BL6NJ_G0017489.1 mouse_genomes_project 10 22875118 22882759 + Moxd1 protein_coding processed_transcript MGP_C57BL6NJ_T0027606.1 MGP_C57BL6NJ_G0018145.1 mouse_genomes_project 10 123929343 123946802 - MGP_C57BL6NJ_P0027606 Gm10271 protein_coding protein_coding MGP_C57BL6NJ_T0025153.1 MGP_C57BL6NJ_G0017444.1 mouse_genomes_project 10 17767900 17780584 + MGP_C57BL6NJ_P0025153 Il22ra2 protein_coding protein_coding MGP_C57BL6NJ_T0025432.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39424619 39579179 + MGP_C57BL6NJ_P0025432 Rev3l protein_coding protein_coding MGP_C57BL6NJ_T0025433.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39424628 39579136 + MGP_C57BL6NJ_P0025433 Rev3l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025434.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39424865 39579174 + MGP_C57BL6NJ_P0025434 Rev3l protein_coding protein_coding MGP_C57BL6NJ_T0025435.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39526053 39579176 + MGP_C57BL6NJ_P0025435 Rev3l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025436.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39529196 39546791 + Rev3l protein_coding retained_intron MGP_C57BL6NJ_T0025437.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39562892 39566938 + Rev3l protein_coding retained_intron MGP_C57BL6NJ_T0025438.1 MGP_C57BL6NJ_G0017551.1 mouse_genomes_project 10 39571076 39578456 + Rev3l protein_coding retained_intron MGP_C57BL6NJ_T0027549.1 MGP_C57BL6NJ_G0018125.1 mouse_genomes_project 10 118784908 118970124 + MGP_C57BL6NJ_P0027549 Kcnc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028004.1 MGP_C57BL6NJ_G0018280.1 mouse_genomes_project 10 137082871 137145110 + MGP_C57BL6NJ_P0028004 Sarnp protein_coding protein_coding MGP_C57BL6NJ_T0025226.1 MGP_C57BL6NJ_G0017466.1 mouse_genomes_project 10 21145624 21204050 + MGP_C57BL6NJ_P0025226 Slc2a12 protein_coding protein_coding MGP_C57BL6NJ_T0025227.1 MGP_C57BL6NJ_G0017466.1 mouse_genomes_project 10 21149621 21165146 + Slc2a12 protein_coding processed_transcript MGP_C57BL6NJ_T0006260.1 MGP_C57BL6NJ_G0005237.1 mouse_genomes_project 10 65129004 65143850 + Gm16145 lincRNA lincRNA MGP_C57BL6NJ_T0017593.1 MGP_C57BL6NJ_G0015532.1 mouse_genomes_project 10 90640118 90641095 - Gm15344 processed_transcript processed_transcript MGP_C57BL6NJ_T0099730.1 MGP_C57BL6NJ_G0037776.1 mouse_genomes_project 10 137219231 137219331 + Gm25494 snRNA snRNA MGP_C57BL6NJ_T0003185.1 MGP_C57BL6NJ_G0002965.1 mouse_genomes_project 10 63985410 63997613 + Hk1os antisense antisense MGP_C57BL6NJ_T0003186.1 MGP_C57BL6NJ_G0002965.1 mouse_genomes_project 10 63985761 63998320 + Hk1os antisense antisense MGP_C57BL6NJ_T0003187.1 MGP_C57BL6NJ_G0002965.1 mouse_genomes_project 10 63985776 64011158 + Hk1os antisense antisense MGP_C57BL6NJ_T0099692.1 MGP_C57BL6NJ_G0037738.1 mouse_genomes_project 10 55618222 55618284 - Gm25602 snRNA snRNA MGP_C57BL6NJ_T0012704.1 MGP_C57BL6NJ_G0010749.1 mouse_genomes_project 10 42385399 42385576 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027905.1 MGP_C57BL6NJ_G0018243.1 mouse_genomes_project 10 136296851 136357938 - MGP_C57BL6NJ_P0027905 Rbms2 protein_coding protein_coding MGP_C57BL6NJ_T0027640.1 MGP_C57BL6NJ_G0018159.1 mouse_genomes_project 10 125278737 125306002 + MGP_C57BL6NJ_P0027640 Mdm1 protein_coding protein_coding MGP_C57BL6NJ_T0027641.1 MGP_C57BL6NJ_G0018159.1 mouse_genomes_project 10 125278737 125306002 + MGP_C57BL6NJ_P0027641 Mdm1 protein_coding protein_coding MGP_C57BL6NJ_T0027642.1 MGP_C57BL6NJ_G0018159.1 mouse_genomes_project 10 125278737 125306002 + MGP_C57BL6NJ_P0027642 Mdm1 protein_coding protein_coding MGP_C57BL6NJ_T0027643.1 MGP_C57BL6NJ_G0018159.1 mouse_genomes_project 10 125278737 125306002 + MGP_C57BL6NJ_P0027643 Mdm1 protein_coding protein_coding MGP_C57BL6NJ_T0027501.1 MGP_C57BL6NJ_G0018107.1 mouse_genomes_project 10 113486937 113489285 - MGP_C57BL6NJ_P0027501 Myf6 protein_coding protein_coding MGP_C57BL6NJ_T0028081.1 MGP_C57BL6NJ_G0018329.1 mouse_genomes_project 10 138288059 138288832 + MGP_C57BL6NJ_P0028081 Olfr813 protein_coding protein_coding MGP_C57BL6NJ_T0027118.1 MGP_C57BL6NJ_G0018005.1 mouse_genomes_project 10 89836526 89860259 - MGP_C57BL6NJ_P0027118 Rtcb protein_coding protein_coding MGP_C57BL6NJ_T0027119.1 MGP_C57BL6NJ_G0018005.1 mouse_genomes_project 10 89848406 89857116 - Rtcb protein_coding retained_intron MGP_C57BL6NJ_T0028002.1 MGP_C57BL6NJ_G0018278.1 mouse_genomes_project 10 137064861 137079237 + MGP_C57BL6NJ_P0028002 Dnajc14 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027066.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87318118 87368786 - MGP_C57BL6NJ_P0027066 Appl2 protein_coding protein_coding MGP_C57BL6NJ_T0027067.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87318482 87321216 - MGP_C57BL6NJ_P0027067 Appl2 protein_coding protein_coding MGP_C57BL6NJ_T0027068.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87318827 87329077 - MGP_C57BL6NJ_P0027068 Appl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027069.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87319989 87321470 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027070.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87320852 87331948 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027071.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87320956 87331337 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027072.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87324044 87368718 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027073.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87324164 87331795 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027074.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87328675 87331171 - Appl2 protein_coding retained_intron MGP_C57BL6NJ_T0027075.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87334325 87348369 - Appl2 protein_coding processed_transcript MGP_C57BL6NJ_T0027076.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87337485 87368713 - MGP_C57BL6NJ_P0027076 Appl2 protein_coding protein_coding MGP_C57BL6NJ_T0027077.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87340779 87368651 - MGP_C57BL6NJ_P0027077 Appl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027078.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87340893 87357467 - Appl2 protein_coding processed_transcript MGP_C57BL6NJ_T0027079.1 MGP_C57BL6NJ_G0017988.1 mouse_genomes_project 10 87344712 87368723 - MGP_C57BL6NJ_P0027079 Appl2 protein_coding protein_coding MGP_C57BL6NJ_T0027449.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106039840 106052586 + MGP_C57BL6NJ_P0027449 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027450.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041679 106067439 + MGP_C57BL6NJ_P0027450 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027451.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041699 106067524 + MGP_C57BL6NJ_P0027451 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027452.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041705 106061724 + MGP_C57BL6NJ_P0027452 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027453.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041710 106067518 + MGP_C57BL6NJ_P0027453 1700017N19Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027454.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041714 106067518 + MGP_C57BL6NJ_P0027454 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027455.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041725 106067441 + MGP_C57BL6NJ_P0027455 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027456.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106041737 106067528 + MGP_C57BL6NJ_P0027456 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027457.1 MGP_C57BL6NJ_G0018093.1 mouse_genomes_project 10 106058361 106067436 + MGP_C57BL6NJ_P0027457 1700017N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0027410.1 MGP_C57BL6NJ_G0018070.1 mouse_genomes_project 10 100291680 100323306 + MGP_C57BL6NJ_P0027410 Ube2n protein_coding protein_coding MGP_C57BL6NJ_T0025993.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70202181 70270956 + MGP_C57BL6NJ_P0025993 Rtkn2 protein_coding protein_coding MGP_C57BL6NJ_T0025994.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70202209 70270952 + MGP_C57BL6NJ_P0025994 Rtkn2 protein_coding protein_coding MGP_C57BL6NJ_T0025995.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70202216 70286785 + MGP_C57BL6NJ_P0025995 Rtkn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025996.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70202309 70286788 + MGP_C57BL6NJ_P0025996 Rtkn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025997.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70202326 70269393 + MGP_C57BL6NJ_P0025997 Rtkn2 protein_coding protein_coding MGP_C57BL6NJ_T0025998.1 MGP_C57BL6NJ_G0017723.1 mouse_genomes_project 10 70271055 70278116 + Rtkn2 protein_coding processed_transcript MGP_C57BL6NJ_T0006315.1 MGP_C57BL6NJ_G0005270.1 mouse_genomes_project 10 119271192 119339032 + 1700010J16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006316.1 MGP_C57BL6NJ_G0005270.1 mouse_genomes_project 10 119271230 119339035 + 1700010J16Rik lincRNA lincRNA MGP_C57BL6NJ_T0025615.1 MGP_C57BL6NJ_G0017610.1 mouse_genomes_project 10 52196373 52215796 + MGP_C57BL6NJ_P0025615 protein_coding protein_coding MGP_C57BL6NJ_T0025616.1 MGP_C57BL6NJ_G0017610.1 mouse_genomes_project 10 52196373 52215812 + MGP_C57BL6NJ_P0025616 protein_coding protein_coding MGP_C57BL6NJ_T0025619.1 MGP_C57BL6NJ_G0017610.1 mouse_genomes_project 10 52204800 52215812 + MGP_C57BL6NJ_P0025619 protein_coding protein_coding MGP_C57BL6NJ_T0009836.1 MGP_C57BL6NJ_G0007921.1 mouse_genomes_project 10 136613911 136613987 + Gm25361 miRNA miRNA MGP_C57BL6NJ_T0100942.1 MGP_C57BL6NJ_G0038988.1 mouse_genomes_project 10 6227488 6227625 - Gm25410 snoRNA snoRNA MGP_C57BL6NJ_T0025355.1 MGP_C57BL6NJ_G0017520.1 mouse_genomes_project 10 30462286 30574858 - MGP_C57BL6NJ_P0025355 Tpd52l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025356.1 MGP_C57BL6NJ_G0017520.1 mouse_genomes_project 10 30462296 30575049 - MGP_C57BL6NJ_P0025356 Tpd52l1 protein_coding protein_coding MGP_C57BL6NJ_T0027885.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136155104 136177183 + MGP_C57BL6NJ_P0027885 Prim1 protein_coding protein_coding MGP_C57BL6NJ_T0027886.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136155108 136177237 + MGP_C57BL6NJ_P0027886 Prim1 protein_coding protein_coding MGP_C57BL6NJ_T0027887.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136155132 136177065 + Prim1 protein_coding retained_intron MGP_C57BL6NJ_T0027888.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136155185 136177072 + MGP_C57BL6NJ_P0027888 Prim1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027889.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136166588 136168759 + Prim1 protein_coding retained_intron MGP_C57BL6NJ_T0027890.1 MGP_C57BL6NJ_G0018238.1 mouse_genomes_project 10 136173886 136177233 + Prim1 protein_coding retained_intron MGP_C57BL6NJ_T0100940.1 MGP_C57BL6NJ_G0038986.1 mouse_genomes_project 10 1150234 1150366 + Gm25369 snoRNA snoRNA MGP_C57BL6NJ_T0026230.1 MGP_C57BL6NJ_G0017762.1 mouse_genomes_project 10 78715096 78718133 - MGP_C57BL6NJ_P0026230 Gstt2 protein_coding protein_coding MGP_C57BL6NJ_T0025473.1 MGP_C57BL6NJ_G0017570.1 mouse_genomes_project 10 41315503 41330647 + MGP_C57BL6NJ_P0025473 Zbtb24 protein_coding protein_coding MGP_C57BL6NJ_T0026368.1 MGP_C57BL6NJ_G0017805.1 mouse_genomes_project 10 80977987 81062536 + MGP_C57BL6NJ_P0026368 Tspear protein_coding protein_coding MGP_C57BL6NJ_T0026369.1 MGP_C57BL6NJ_G0017805.1 mouse_genomes_project 10 80978052 81067825 + MGP_C57BL6NJ_P0026369 Tspear protein_coding protein_coding MGP_C57BL6NJ_T0026370.1 MGP_C57BL6NJ_G0017805.1 mouse_genomes_project 10 81046389 81049809 + Tspear protein_coding retained_intron MGP_C57BL6NJ_T0017596.1 MGP_C57BL6NJ_G0015534.1 mouse_genomes_project 10 127708485 127729627 + 1700006J14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012712.1 MGP_C57BL6NJ_G0010757.1 mouse_genomes_project 10 53176979 53177414 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100987.1 MGP_C57BL6NJ_G0039033.1 mouse_genomes_project 10 107110364 107110496 + Gm26278 snoRNA snoRNA MGP_C57BL6NJ_T0027502.1 MGP_C57BL6NJ_G0018108.1 mouse_genomes_project 10 113515047 113743416 - MGP_C57BL6NJ_P0027502 Ptprq protein_coding protein_coding MGP_C57BL6NJ_T0027807.1 MGP_C57BL6NJ_G0018214.1 mouse_genomes_project 10 135380704 135383075 - MGP_C57BL6NJ_P0027807 Inhbe protein_coding protein_coding MGP_C57BL6NJ_T0026430.1 MGP_C57BL6NJ_G0017817.1 mouse_genomes_project 10 81628013 81641060 - MGP_C57BL6NJ_P0026430 Rrp1 protein_coding protein_coding MGP_C57BL6NJ_T0099687.1 MGP_C57BL6NJ_G0037733.1 mouse_genomes_project 10 47221982 47222144 - Gm25650 snRNA snRNA MGP_C57BL6NJ_T0025198.1 MGP_C57BL6NJ_G0017459.1 mouse_genomes_project 10 19667186 19687536 + MGP_C57BL6NJ_P0025198 Aldh8a1 protein_coding protein_coding MGP_C57BL6NJ_T0025199.1 MGP_C57BL6NJ_G0017459.1 mouse_genomes_project 10 19667195 19676512 + Aldh8a1 protein_coding retained_intron MGP_C57BL6NJ_T0025200.1 MGP_C57BL6NJ_G0017459.1 mouse_genomes_project 10 19667242 19679944 + MGP_C57BL6NJ_P0025200 Aldh8a1 protein_coding protein_coding MGP_C57BL6NJ_T0006306.1 MGP_C57BL6NJ_G0005263.1 mouse_genomes_project 10 100185341 100196598 + 5730420D15Rik lincRNA lincRNA MGP_C57BL6NJ_T0025372.1 MGP_C57BL6NJ_G0017530.1 mouse_genomes_project 10 33250174 33273490 - MGP_C57BL6NJ_P0025372 Rwdd1 protein_coding protein_coding MGP_C57BL6NJ_T0025373.1 MGP_C57BL6NJ_G0017530.1 mouse_genomes_project 10 33250180 33254865 - Rwdd1 protein_coding retained_intron MGP_C57BL6NJ_T0027010.1 MGP_C57BL6NJ_G0017970.1 mouse_genomes_project 10 85616294 85632525 + MGP_C57BL6NJ_P0027010 Zfp873 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027011.1 MGP_C57BL6NJ_G0017970.1 mouse_genomes_project 10 85626484 85629397 + MGP_C57BL6NJ_P0027011 Zfp873 protein_coding protein_coding MGP_C57BL6NJ_T0003179.1 MGP_C57BL6NJ_G0002959.1 mouse_genomes_project 10 42729676 42754185 - Gm15199 antisense antisense MGP_C57BL6NJ_T0100997.1 MGP_C57BL6NJ_G0039043.1 mouse_genomes_project 10 124187473 124187550 - Gm26311 snoRNA snoRNA MGP_C57BL6NJ_T0099666.1 MGP_C57BL6NJ_G0037712.1 mouse_genomes_project 10 1528240 1528400 + Gm22739 snRNA snRNA MGP_C57BL6NJ_T0026872.1 MGP_C57BL6NJ_G0017941.1 mouse_genomes_project 10 84789290 84794365 + MGP_C57BL6NJ_P0026872 Apba3 protein_coding protein_coding MGP_C57BL6NJ_T0006283.1 MGP_C57BL6NJ_G0005253.1 mouse_genomes_project 10 88388141 88395114 - lincRNA lincRNA MGP_C57BL6NJ_T0025905.1 MGP_C57BL6NJ_G0017700.1 mouse_genomes_project 10 64324093 64413617 - MGP_C57BL6NJ_P0025905 Stox1 protein_coding protein_coding MGP_C57BL6NJ_T0025906.1 MGP_C57BL6NJ_G0017700.1 mouse_genomes_project 10 64324093 64413290 - MGP_C57BL6NJ_P0025906 Stox1 protein_coding protein_coding MGP_C57BL6NJ_T0025907.1 MGP_C57BL6NJ_G0017700.1 mouse_genomes_project 10 64334221 64413290 - MGP_C57BL6NJ_P0025907 Stox1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025987.1 MGP_C57BL6NJ_G0017720.1 mouse_genomes_project 10 69747879 69752326 - MGP_C57BL6NJ_P0025987 Ado protein_coding protein_coding MGP_C57BL6NJ_T0026441.1 MGP_C57BL6NJ_G0017826.1 mouse_genomes_project 10 82035561 82065463 + MGP_C57BL6NJ_P0026441 Slc1a6 protein_coding protein_coding MGP_C57BL6NJ_T0025827.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63262482 63307360 + MGP_C57BL6NJ_P0025827 Aifm2 protein_coding protein_coding MGP_C57BL6NJ_T0025828.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63262506 63296628 + Aifm2 protein_coding retained_intron MGP_C57BL6NJ_T0025829.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63262530 63307967 + MGP_C57BL6NJ_P0025829 Aifm2 protein_coding protein_coding MGP_C57BL6NJ_T0025830.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63262542 63307354 + MGP_C57BL6NJ_P0025830 Aifm2 protein_coding protein_coding MGP_C57BL6NJ_T0025831.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63262551 63263455 + Aifm2 protein_coding processed_transcript MGP_C57BL6NJ_T0025832.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63273776 63307360 + MGP_C57BL6NJ_P0025832 Aifm2 protein_coding protein_coding MGP_C57BL6NJ_T0025833.1 MGP_C57BL6NJ_G0017683.1 mouse_genomes_project 10 63296854 63303277 + Aifm2 protein_coding retained_intron MGP_C57BL6NJ_T0006311.1 MGP_C57BL6NJ_G0005266.1 mouse_genomes_project 10 108738826 108739692 - Gm17028 lincRNA lincRNA MGP_C57BL6NJ_T0099674.1 MGP_C57BL6NJ_G0037720.1 mouse_genomes_project 10 21691032 21691139 - Gm24655 snRNA snRNA MGP_C57BL6NJ_T0003204.1 MGP_C57BL6NJ_G0002980.1 mouse_genomes_project 10 83194725 83195208 - Gm17134 antisense antisense MGP_C57BL6NJ_T0028066.1 MGP_C57BL6NJ_G0018320.1 mouse_genomes_project 10 138138201 138139161 - MGP_C57BL6NJ_P0028066 Olfr805 protein_coding protein_coding MGP_C57BL6NJ_T0028067.1 MGP_C57BL6NJ_G0018320.1 mouse_genomes_project 10 138138201 138139410 - MGP_C57BL6NJ_P0028067 Olfr805 protein_coding protein_coding MGP_C57BL6NJ_T0028068.1 MGP_C57BL6NJ_G0018320.1 mouse_genomes_project 10 138139019 138143777 - MGP_C57BL6NJ_P0028068 Olfr805 protein_coding protein_coding MGP_C57BL6NJ_T0028071.1 MGP_C57BL6NJ_G0018322.1 mouse_genomes_project 10 138172224 138173221 - MGP_C57BL6NJ_P0028071 Olfr807 protein_coding protein_coding MGP_C57BL6NJ_T0025963.1 MGP_C57BL6NJ_G0017714.1 mouse_genomes_project 10 65762627 65765196 - MGP_C57BL6NJ_P0025963 Gm10118 protein_coding protein_coding MGP_C57BL6NJ_T0026744.1 MGP_C57BL6NJ_G0017902.1 mouse_genomes_project 10 84016962 84024985 - MGP_C57BL6NJ_P0026744 Abhd17a protein_coding protein_coding MGP_C57BL6NJ_T0026745.1 MGP_C57BL6NJ_G0017902.1 mouse_genomes_project 10 84016963 84024968 - MGP_C57BL6NJ_P0026745 Abhd17a protein_coding protein_coding MGP_C57BL6NJ_T0026746.1 MGP_C57BL6NJ_G0017902.1 mouse_genomes_project 10 84016964 84019933 - MGP_C57BL6NJ_P0026746 Abhd17a protein_coding protein_coding MGP_C57BL6NJ_T0026747.1 MGP_C57BL6NJ_G0017902.1 mouse_genomes_project 10 84019987 84024959 - MGP_C57BL6NJ_P0026747 Abhd17a protein_coding protein_coding MGP_C57BL6NJ_T0003178.1 MGP_C57BL6NJ_G0002958.1 mouse_genomes_project 10 42683893 42684376 - Gm15200 antisense antisense MGP_C57BL6NJ_T0027436.1 MGP_C57BL6NJ_G0018088.1 mouse_genomes_project 10 105404475 105502604 + MGP_C57BL6NJ_P0027436 Kitl protein_coding protein_coding MGP_C57BL6NJ_T0027437.1 MGP_C57BL6NJ_G0018088.1 mouse_genomes_project 10 105404671 105477034 + MGP_C57BL6NJ_P0027437 Kitl protein_coding protein_coding MGP_C57BL6NJ_T0027438.1 MGP_C57BL6NJ_G0018088.1 mouse_genomes_project 10 105404761 105497379 + MGP_C57BL6NJ_P0027438 Kitl protein_coding protein_coding MGP_C57BL6NJ_T0099711.1 MGP_C57BL6NJ_G0037757.1 mouse_genomes_project 10 94750423 94750518 + Gm22602 snRNA snRNA MGP_C57BL6NJ_T0011544.1 MGP_C57BL6NJ_G0009629.1 mouse_genomes_project 10 100385559 100385884 + Gm23776 misc_RNA misc_RNA MGP_C57BL6NJ_T0025685.1 MGP_C57BL6NJ_G0017638.1 mouse_genomes_project 10 58952443 58963176 + MGP_C57BL6NJ_P0025685 Smpdl3a protein_coding protein_coding MGP_C57BL6NJ_T0025686.1 MGP_C57BL6NJ_G0017638.1 mouse_genomes_project 10 58952482 58974010 + MGP_C57BL6NJ_P0025686 Smpdl3a protein_coding protein_coding MGP_C57BL6NJ_T0025687.1 MGP_C57BL6NJ_G0017638.1 mouse_genomes_project 10 58952676 58968096 + Smpdl3a protein_coding processed_transcript MGP_C57BL6NJ_T0098945.1 MGP_C57BL6NJ_G0037009.1 mouse_genomes_project 10 25169899 25169999 + Gm23757 rRNA rRNA MGP_C57BL6NJ_T0027772.1 MGP_C57BL6NJ_G0018201.1 mouse_genomes_project 10 135101737 135131524 - MGP_C57BL6NJ_P0027772 Os9 protein_coding protein_coding MGP_C57BL6NJ_T0027773.1 MGP_C57BL6NJ_G0018201.1 mouse_genomes_project 10 135101737 135131524 - MGP_C57BL6NJ_P0027773 Os9 protein_coding protein_coding MGP_C57BL6NJ_T0027738.1 MGP_C57BL6NJ_G0018190.1 mouse_genomes_project 10 134835030 134883236 - MGP_C57BL6NJ_P0027738 Xrcc6bp1 protein_coding protein_coding MGP_C57BL6NJ_T0027739.1 MGP_C57BL6NJ_G0018190.1 mouse_genomes_project 10 134862064 134883236 - MGP_C57BL6NJ_P0027739 Xrcc6bp1 protein_coding protein_coding MGP_C57BL6NJ_T0027513.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 115855925 116213145 - MGP_C57BL6NJ_P0027513 Nav3 protein_coding protein_coding MGP_C57BL6NJ_T0027514.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 115855925 116006351 - MGP_C57BL6NJ_P0027514 Nav3 protein_coding protein_coding MGP_C57BL6NJ_T0027515.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 115890477 115899951 - Nav3 protein_coding processed_transcript MGP_C57BL6NJ_T0027516.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 115935184 115946185 - MGP_C57BL6NJ_P0027516 Nav3 protein_coding protein_coding MGP_C57BL6NJ_T0027517.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 116067336 116094539 - Nav3 protein_coding retained_intron MGP_C57BL6NJ_T0027518.1 MGP_C57BL6NJ_G0018113.1 mouse_genomes_project 10 116089618 116714296 - Nav3 protein_coding retained_intron MGP_C57BL6NJ_T0026175.1 MGP_C57BL6NJ_G0017750.1 mouse_genomes_project 10 78246093 78286237 + MGP_C57BL6NJ_P0026175 Upb1 protein_coding protein_coding MGP_C57BL6NJ_T0026176.1 MGP_C57BL6NJ_G0017750.1 mouse_genomes_project 10 78246140 78265434 + Upb1 protein_coding retained_intron MGP_C57BL6NJ_T0026177.1 MGP_C57BL6NJ_G0017750.1 mouse_genomes_project 10 78249225 78268546 + Upb1 protein_coding retained_intron MGP_C57BL6NJ_T0026179.1 MGP_C57BL6NJ_G0017750.1 mouse_genomes_project 10 78268949 78271088 + Upb1 protein_coding retained_intron MGP_C57BL6NJ_T0027064.1 MGP_C57BL6NJ_G0017987.1 mouse_genomes_project 10 87258384 87314562 + MGP_C57BL6NJ_P0027064 A230046K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0027065.1 MGP_C57BL6NJ_G0017987.1 mouse_genomes_project 10 87258485 87314572 + MGP_C57BL6NJ_P0027065 A230046K03Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000963.1 MGP_C57BL6NJ_G0000873.1 mouse_genomes_project 10 121066974 121067289 + TEC TEC MGP_C57BL6NJ_T0100958.1 MGP_C57BL6NJ_G0039004.1 mouse_genomes_project 10 34454033 34454167 + Gm26341 snoRNA snoRNA MGP_C57BL6NJ_T0027903.1 MGP_C57BL6NJ_G0018242.1 mouse_genomes_project 10 136253663 136296239 + MGP_C57BL6NJ_P0027903 Baz2a protein_coding protein_coding MGP_C57BL6NJ_T0027904.1 MGP_C57BL6NJ_G0018242.1 mouse_genomes_project 10 136253663 136296239 + MGP_C57BL6NJ_P0027904 Baz2a protein_coding protein_coding MGP_C57BL6NJ_T0099691.1 MGP_C57BL6NJ_G0037737.1 mouse_genomes_project 10 55189064 55189171 - Gm26177 snRNA snRNA MGP_C57BL6NJ_T0025108.1 MGP_C57BL6NJ_G0017429.1 mouse_genomes_project 10 15754082 15756528 + MGP_C57BL6NJ_P0025108 Cited2 protein_coding protein_coding MGP_C57BL6NJ_T0025466.1 MGP_C57BL6NJ_G0017566.1 mouse_genomes_project 10 40712918 40770860 + MGP_C57BL6NJ_P0025466 Wasf1 protein_coding protein_coding MGP_C57BL6NJ_T0025467.1 MGP_C57BL6NJ_G0017566.1 mouse_genomes_project 10 40713270 40770861 + MGP_C57BL6NJ_P0025467 Wasf1 protein_coding protein_coding MGP_C57BL6NJ_T0025418.1 MGP_C57BL6NJ_G0017548.1 mouse_genomes_project 10 38806597 38820269 - MGP_C57BL6NJ_P0025418 Wisp3 protein_coding protein_coding MGP_C57BL6NJ_T0027612.1 MGP_C57BL6NJ_G0018151.1 mouse_genomes_project 10 124247368 124253786 - MGP_C57BL6NJ_P0027612 9530003J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0027613.1 MGP_C57BL6NJ_G0018151.1 mouse_genomes_project 10 124248892 124253835 - MGP_C57BL6NJ_P0027613 9530003J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0009813.1 MGP_C57BL6NJ_G0007898.1 mouse_genomes_project 10 100336801 100336892 - Mir3058 miRNA miRNA MGP_C57BL6NJ_T0024902.1 MGP_C57BL6NJ_G0017387.1 mouse_genomes_project 10 3003769 3116198 - MGP_C57BL6NJ_P0024902 Rgs17 protein_coding protein_coding MGP_C57BL6NJ_T0024903.1 MGP_C57BL6NJ_G0017387.1 mouse_genomes_project 10 3003769 3116184 - MGP_C57BL6NJ_P0024903 Rgs17 protein_coding protein_coding MGP_C57BL6NJ_T0024904.1 MGP_C57BL6NJ_G0017387.1 mouse_genomes_project 10 3010275 3116164 - MGP_C57BL6NJ_P0024904 Rgs17 protein_coding protein_coding MGP_C57BL6NJ_T0024905.1 MGP_C57BL6NJ_G0017387.1 mouse_genomes_project 10 3011202 3116164 - MGP_C57BL6NJ_P0024905 Rgs17 protein_coding protein_coding MGP_C57BL6NJ_T0009759.1 MGP_C57BL6NJ_G0007844.1 mouse_genomes_project 10 323469 323562 + Gm24482 miRNA miRNA MGP_C57BL6NJ_T0102723.1 MGP_C57BL6NJ_G0040518.1 mouse_genomes_project 10 137943702 137944597 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003206.1 MGP_C57BL6NJ_G0002982.1 mouse_genomes_project 10 83777471 83778006 + Gm15123 antisense antisense MGP_C57BL6NJ_T0027329.1 MGP_C57BL6NJ_G0018051.1 mouse_genomes_project 10 98064313 98084179 - MGP_C57BL6NJ_P0027329 Amdhd1 protein_coding protein_coding MGP_C57BL6NJ_T0027835.1 MGP_C57BL6NJ_G0018218.1 mouse_genomes_project 10 135576183 135578397 + MGP_C57BL6NJ_P0027835 Ndufa4l2 protein_coding protein_coding MGP_C57BL6NJ_T0026584.1 MGP_C57BL6NJ_G0017872.1 mouse_genomes_project 10 83373720 83389928 + MGP_C57BL6NJ_P0026584 Hmha1 protein_coding protein_coding MGP_C57BL6NJ_T0026585.1 MGP_C57BL6NJ_G0017872.1 mouse_genomes_project 10 83373806 83389925 + Hmha1 protein_coding retained_intron MGP_C57BL6NJ_T0026586.1 MGP_C57BL6NJ_G0017872.1 mouse_genomes_project 10 83373983 83389925 + MGP_C57BL6NJ_P0026586 Hmha1 protein_coding protein_coding MGP_C57BL6NJ_T0026587.1 MGP_C57BL6NJ_G0017872.1 mouse_genomes_project 10 83378019 83389924 + MGP_C57BL6NJ_P0026587 Hmha1 protein_coding protein_coding MGP_C57BL6NJ_T0026588.1 MGP_C57BL6NJ_G0017872.1 mouse_genomes_project 10 83380109 83389918 + Hmha1 protein_coding retained_intron MGP_C57BL6NJ_T0026922.1 MGP_C57BL6NJ_G0017952.1 mouse_genomes_project 10 84926104 84927908 + MGP_C57BL6NJ_P0026922 Smim24 protein_coding protein_coding MGP_C57BL6NJ_T0026923.1 MGP_C57BL6NJ_G0017952.1 mouse_genomes_project 10 84926665 84928153 + Smim24 protein_coding processed_transcript MGP_C57BL6NJ_T0025242.1 MGP_C57BL6NJ_G0017473.1 mouse_genomes_project 10 22466272 22484614 + MGP_C57BL6NJ_P0025242 Vnn1 protein_coding protein_coding MGP_C57BL6NJ_T0099697.1 MGP_C57BL6NJ_G0037743.1 mouse_genomes_project 10 68243158 68243264 - Gm22829 snRNA snRNA MGP_C57BL6NJ_T0025548.1 MGP_C57BL6NJ_G0017586.1 mouse_genomes_project 10 42757025 42831222 + MGP_C57BL6NJ_P0025548 Sec63 protein_coding protein_coding MGP_C57BL6NJ_T0025549.1 MGP_C57BL6NJ_G0017586.1 mouse_genomes_project 10 42757144 42829100 + Sec63 protein_coding retained_intron MGP_C57BL6NJ_T0025550.1 MGP_C57BL6NJ_G0017586.1 mouse_genomes_project 10 42757335 42810624 + Sec63 protein_coding retained_intron MGP_C57BL6NJ_T0025551.1 MGP_C57BL6NJ_G0017586.1 mouse_genomes_project 10 42815809 42827988 + Sec63 protein_coding processed_transcript MGP_C57BL6NJ_T0025552.1 MGP_C57BL6NJ_G0017586.1 mouse_genomes_project 10 42815809 42827991 + Sec63 protein_coding processed_transcript MGP_C57BL6NJ_T0003183.1 MGP_C57BL6NJ_G0002963.1 mouse_genomes_project 10 61088136 61089126 - Gm17059 antisense antisense MGP_C57BL6NJ_T0026281.1 MGP_C57BL6NJ_G0017781.1 mouse_genomes_project 10 79516530 79524499 + MGP_C57BL6NJ_P0026281 Spatc1l protein_coding protein_coding MGP_C57BL6NJ_T0026282.1 MGP_C57BL6NJ_G0017781.1 mouse_genomes_project 10 79516567 79524328 + MGP_C57BL6NJ_P0026282 Spatc1l protein_coding protein_coding MGP_C57BL6NJ_T0000965.1 MGP_C57BL6NJ_G0000875.1 mouse_genomes_project 10 126035688 126038405 + TEC TEC MGP_C57BL6NJ_T0006256.1 MGP_C57BL6NJ_G0005233.1 mouse_genomes_project 10 62346584 62357745 - Pldi lincRNA lincRNA MGP_C57BL6NJ_T0024893.1 MGP_C57BL6NJ_G0017382.1 mouse_genomes_project 10 2156090 2158874 + MGP_C57BL6NJ_P0024893 Gm10097 protein_coding protein_coding MGP_C57BL6NJ_T0027687.1 MGP_C57BL6NJ_G0018169.1 mouse_genomes_project 10 127820400 127827666 - protein_coding retained_intron MGP_C57BL6NJ_T0012711.1 MGP_C57BL6NJ_G0010756.1 mouse_genomes_project 10 52954349 52954909 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026845.1 MGP_C57BL6NJ_G0017933.1 mouse_genomes_project 10 84685448 84690749 + MGP_C57BL6NJ_P0026845 Eef2 protein_coding protein_coding MGP_C57BL6NJ_T0009820.1 MGP_C57BL6NJ_G0007905.1 mouse_genomes_project 10 115473728 115473811 - Gm44495 miRNA miRNA MGP_C57BL6NJ_T0012713.1 MGP_C57BL6NJ_G0010758.1 mouse_genomes_project 10 58754532 58755088 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006323.1 MGP_C57BL6NJ_G0005274.1 mouse_genomes_project 10 126286520 126296803 + 1700064J06Rik lincRNA lincRNA MGP_C57BL6NJ_T0026640.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83533826 83538938 + MGP_C57BL6NJ_P0026640 Cirbp protein_coding protein_coding MGP_C57BL6NJ_T0026641.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83536413 83540277 + MGP_C57BL6NJ_P0026641 Cirbp protein_coding protein_coding MGP_C57BL6NJ_T0026642.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83536475 83541405 + MGP_C57BL6NJ_P0026642 Cirbp protein_coding protein_coding MGP_C57BL6NJ_T0026643.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83536498 83538751 + Cirbp protein_coding retained_intron MGP_C57BL6NJ_T0026644.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83536521 83539759 + Cirbp protein_coding retained_intron MGP_C57BL6NJ_T0026645.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83538848 83539826 + Cirbp protein_coding retained_intron MGP_C57BL6NJ_T0026646.1 MGP_C57BL6NJ_G0017880.1 mouse_genomes_project 10 83540603 83541320 + Cirbp protein_coding retained_intron MGP_C57BL6NJ_T0027222.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93094013 93438762 - MGP_C57BL6NJ_P0027222 Ano4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027223.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93094014 93438562 - MGP_C57BL6NJ_P0027223 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027224.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93094020 93438594 - MGP_C57BL6NJ_P0027224 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027225.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93094021 93438272 - MGP_C57BL6NJ_P0027225 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027226.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93137802 93156945 - MGP_C57BL6NJ_P0027226 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027227.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93151671 93188240 - Ano4 protein_coding processed_transcript MGP_C57BL6NJ_T0027228.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93178792 93438526 - Ano4 protein_coding retained_intron MGP_C57BL6NJ_T0027229.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93198263 93533940 - MGP_C57BL6NJ_P0027229 Ano4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027230.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93228135 93438562 - MGP_C57BL6NJ_P0027230 Ano4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027231.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93228687 93438108 - MGP_C57BL6NJ_P0027231 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027232.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93251262 93500884 - MGP_C57BL6NJ_P0027232 Ano4 protein_coding protein_coding MGP_C57BL6NJ_T0027233.1 MGP_C57BL6NJ_G0018033.1 mouse_genomes_project 10 93522866 93534057 - Ano4 protein_coding processed_transcript MGP_C57BL6NJ_T0027098.1 MGP_C57BL6NJ_G0017998.1 mouse_genomes_project 10 88939028 88947621 - MGP_C57BL6NJ_P0027098 Mterf2 protein_coding protein_coding MGP_C57BL6NJ_T0027559.1 MGP_C57BL6NJ_G0018131.1 mouse_genomes_project 10 122089655 122117931 - MGP_C57BL6NJ_P0027559 Rab21 protein_coding protein_coding MGP_C57BL6NJ_T0100941.1 MGP_C57BL6NJ_G0038987.1 mouse_genomes_project 10 5208385 5208506 - Gm24726 snoRNA snoRNA MGP_C57BL6NJ_T0009770.1 MGP_C57BL6NJ_G0007855.1 mouse_genomes_project 10 45131809 45131920 - Gm24271 miRNA miRNA MGP_C57BL6NJ_T0025301.1 MGP_C57BL6NJ_G0017502.1 mouse_genomes_project 10 25615092 25730565 + MGP_C57BL6NJ_P0025301 Arhgap18 protein_coding protein_coding MGP_C57BL6NJ_T0025302.1 MGP_C57BL6NJ_G0017502.1 mouse_genomes_project 10 25635286 25793431 + MGP_C57BL6NJ_P0025302 Arhgap18 protein_coding protein_coding MGP_C57BL6NJ_T0025303.1 MGP_C57BL6NJ_G0017502.1 mouse_genomes_project 10 25690778 25719842 + MGP_C57BL6NJ_P0025303 Arhgap18 protein_coding protein_coding MGP_C57BL6NJ_T0025304.1 MGP_C57BL6NJ_G0017502.1 mouse_genomes_project 10 25733175 25793241 + Arhgap18 protein_coding processed_transcript MGP_C57BL6NJ_T0009831.1 MGP_C57BL6NJ_G0007916.1 mouse_genomes_project 10 134996905 134997026 + Mir546 miRNA miRNA MGP_C57BL6NJ_T0028064.1 MGP_C57BL6NJ_G0018318.1 mouse_genomes_project 10 138119764 138120709 + MGP_C57BL6NJ_P0028064 Olfr804 protein_coding protein_coding MGP_C57BL6NJ_T0011533.1 MGP_C57BL6NJ_G0009618.1 mouse_genomes_project 10 78287177 78287500 + Gm25545 misc_RNA misc_RNA MGP_C57BL6NJ_T0025979.1 MGP_C57BL6NJ_G0017718.1 mouse_genomes_project 10 69448298 69467139 - MGP_C57BL6NJ_P0025979 protein_coding protein_coding MGP_C57BL6NJ_T0003205.1 MGP_C57BL6NJ_G0002981.1 mouse_genomes_project 10 83684239 83684802 - Gm15122 antisense antisense MGP_C57BL6NJ_T0027703.1 MGP_C57BL6NJ_G0018179.1 mouse_genomes_project 10 129176343 129224403 + MGP_C57BL6NJ_P0027703 D930020B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0027704.1 MGP_C57BL6NJ_G0018179.1 mouse_genomes_project 10 129176456 129239477 + MGP_C57BL6NJ_P0027704 D930020B18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027705.1 MGP_C57BL6NJ_G0018179.1 mouse_genomes_project 10 129176549 129239206 + MGP_C57BL6NJ_P0027705 D930020B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0027706.1 MGP_C57BL6NJ_G0018179.1 mouse_genomes_project 10 129176627 129239206 + MGP_C57BL6NJ_P0027706 D930020B18Rik protein_coding protein_coding MGP_C57BL6NJ_T0027938.1 MGP_C57BL6NJ_G0018252.1 mouse_genomes_project 10 136502726 136524441 + MGP_C57BL6NJ_P0027938 Pan2 protein_coding protein_coding MGP_C57BL6NJ_T0027939.1 MGP_C57BL6NJ_G0018252.1 mouse_genomes_project 10 136502828 136523848 + MGP_C57BL6NJ_P0027939 Pan2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026439.1 MGP_C57BL6NJ_G0017824.1 mouse_genomes_project 10 81967162 81973423 - MGP_C57BL6NJ_P0026439 Casp14 protein_coding protein_coding MGP_C57BL6NJ_T0027615.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124378855 124433348 - MGP_C57BL6NJ_P0027615 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0027616.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124383221 124433351 - MGP_C57BL6NJ_P0027616 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0027617.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124383224 124433307 - MGP_C57BL6NJ_P0027617 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0027618.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124383556 124400366 - MGP_C57BL6NJ_P0027618 Cpsf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027619.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124387987 124433306 - MGP_C57BL6NJ_P0027619 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0027620.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124389708 124390239 - MGP_C57BL6NJ_P0027620 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0027621.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124396902 124402655 - Cpsf6 protein_coding retained_intron MGP_C57BL6NJ_T0027622.1 MGP_C57BL6NJ_G0018153.1 mouse_genomes_project 10 124407069 124438714 - MGP_C57BL6NJ_P0027622 Cpsf6 protein_coding protein_coding MGP_C57BL6NJ_T0025349.1 MGP_C57BL6NJ_G0017518.1 mouse_genomes_project 10 30372902 30375808 + MGP_C57BL6NJ_P0025349 Gm5422 protein_coding protein_coding MGP_C57BL6NJ_T0025719.1 MGP_C57BL6NJ_G0017652.1 mouse_genomes_project 10 60669555 60690483 + MGP_C57BL6NJ_P0025719 Pla2g12b protein_coding protein_coding MGP_C57BL6NJ_T0025720.1 MGP_C57BL6NJ_G0017652.1 mouse_genomes_project 10 60678025 60690477 + MGP_C57BL6NJ_P0025720 Pla2g12b protein_coding protein_coding MGP_C57BL6NJ_T0009780.1 MGP_C57BL6NJ_G0007865.1 mouse_genomes_project 10 63343285 63343370 + Mir5108 miRNA miRNA MGP_C57BL6NJ_T0027934.1 MGP_C57BL6NJ_G0018249.1 mouse_genomes_project 10 136458985 136461140 + MGP_C57BL6NJ_P0027934 Apof protein_coding protein_coding MGP_C57BL6NJ_T0025371.1 MGP_C57BL6NJ_G0017529.1 mouse_genomes_project 10 33248608 33248674 - MGP_C57BL6NJ_P0025371 Gm17567 protein_coding protein_coding MGP_C57BL6NJ_T0027122.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89924300 89957297 + MGP_C57BL6NJ_P0027122 Fbxo7 protein_coding protein_coding MGP_C57BL6NJ_T0027123.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89924356 89952020 + MGP_C57BL6NJ_P0027123 Fbxo7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027124.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89924388 89931494 + MGP_C57BL6NJ_P0027124 Fbxo7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027125.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89924558 89952050 + MGP_C57BL6NJ_P0027125 Fbxo7 protein_coding protein_coding MGP_C57BL6NJ_T0027126.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89935340 89955598 + Fbxo7 protein_coding processed_transcript MGP_C57BL6NJ_T0027127.1 MGP_C57BL6NJ_G0018007.1 mouse_genomes_project 10 89946178 89950536 + Fbxo7 protein_coding retained_intron MGP_C57BL6NJ_T0025341.1 MGP_C57BL6NJ_G0017514.1 mouse_genomes_project 10 29597498 29665510 - MGP_C57BL6NJ_P0025341 Trmt11 protein_coding protein_coding MGP_C57BL6NJ_T0026302.1 MGP_C57BL6NJ_G0017786.1 mouse_genomes_project 10 79994786 80005887 + MGP_C57BL6NJ_P0026302 Gm10787 protein_coding protein_coding MGP_C57BL6NJ_T0099688.1 MGP_C57BL6NJ_G0037734.1 mouse_genomes_project 10 49106012 49106096 - Gm24256 snRNA snRNA MGP_C57BL6NJ_T0011536.1 MGP_C57BL6NJ_G0009621.1 mouse_genomes_project 10 96492218 96492411 - Gm27999 misc_RNA misc_RNA MGP_C57BL6NJ_T0025029.1 MGP_C57BL6NJ_G0017413.1 mouse_genomes_project 10 10020268 10180890 - MGP_C57BL6NJ_P0025029 Utrn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025030.1 MGP_C57BL6NJ_G0017413.1 mouse_genomes_project 10 10020270 10533130 - MGP_C57BL6NJ_P0025030 Utrn protein_coding protein_coding MGP_C57BL6NJ_T0026482.1 MGP_C57BL6NJ_G0017843.1 mouse_genomes_project 10 82949644 82955037 - MGP_C57BL6NJ_P0026482 Odf3l2 protein_coding protein_coding MGP_C57BL6NJ_T0102721.1 MGP_C57BL6NJ_G0040516.1 mouse_genomes_project 10 137648591 137648798 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0026952.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85124721 85144706 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026953.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85124894 85130072 + MGP_C57BL6NJ_P0026953 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026954.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85124899 85134565 + MGP_C57BL6NJ_P0026954 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026955.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129499 85144710 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026956.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129501 85144713 + MGP_C57BL6NJ_P0026956 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026957.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129570 85144713 + MGP_C57BL6NJ_P0026957 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026958.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129656 85144708 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026959.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129738 85134875 + MGP_C57BL6NJ_P0026959 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026960.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85129771 85145085 + MGP_C57BL6NJ_P0026960 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026961.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85135073 85141167 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026962.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85136782 85141124 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026963.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85141331 85142186 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026964.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85141665 85144663 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0026965.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85142208 85144713 + MGP_C57BL6NJ_P0026965 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026966.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85142238 85144713 + MGP_C57BL6NJ_P0026966 Tle2 protein_coding protein_coding MGP_C57BL6NJ_T0026967.1 MGP_C57BL6NJ_G0017960.1 mouse_genomes_project 10 85142880 85144541 + Tle2 protein_coding retained_intron MGP_C57BL6NJ_T0025857.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63906319 63985697 - MGP_C57BL6NJ_P0025857 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025858.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63906568 64023907 - MGP_C57BL6NJ_P0025858 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025859.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63906572 64006153 - MGP_C57BL6NJ_P0025859 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025860.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63907373 63987877 - MGP_C57BL6NJ_P0025860 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025861.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63923647 63931207 - Hk1 protein_coding retained_intron MGP_C57BL6NJ_T0025862.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63936719 63961215 - MGP_C57BL6NJ_P0025862 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025863.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63936952 63971716 - MGP_C57BL6NJ_P0025863 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025864.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63937569 63987854 - MGP_C57BL6NJ_P0025864 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025865.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63937814 63987863 - Hk1 protein_coding retained_intron MGP_C57BL6NJ_T0025866.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64023851 - MGP_C57BL6NJ_P0025866 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025867.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025867 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025868.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64023851 - MGP_C57BL6NJ_P0025868 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025869.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025869 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025870.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025870 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025871.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025871 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025872.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025872 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025873.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025873 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025874.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64023851 - MGP_C57BL6NJ_P0025874 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025875.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958297 64019101 - MGP_C57BL6NJ_P0025875 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0025876.1 MGP_C57BL6NJ_G0017691.1 mouse_genomes_project 10 63958342 64010065 - MGP_C57BL6NJ_P0025876 Hk1 protein_coding protein_coding MGP_C57BL6NJ_T0027609.1 MGP_C57BL6NJ_G0018148.1 mouse_genomes_project 10 124034591 124047408 - MGP_C57BL6NJ_P0027609 Cct2 protein_coding protein_coding MGP_C57BL6NJ_T0006284.1 MGP_C57BL6NJ_G0005254.1 mouse_genomes_project 10 90628701 90642806 + lincRNA lincRNA MGP_C57BL6NJ_T0027100.1 MGP_C57BL6NJ_G0018000.1 mouse_genomes_project 10 89143386 89144338 + MGP_C57BL6NJ_P0027100 Gm8394 protein_coding protein_coding MGP_C57BL6NJ_T0027692.1 MGP_C57BL6NJ_G0018172.1 mouse_genomes_project 10 128356935 128429965 - MGP_C57BL6NJ_P0027692 Lemd3 protein_coding protein_coding MGP_C57BL6NJ_T0027693.1 MGP_C57BL6NJ_G0018172.1 mouse_genomes_project 10 128357374 128429965 - MGP_C57BL6NJ_P0027693 Lemd3 protein_coding protein_coding MGP_C57BL6NJ_T0027787.1 MGP_C57BL6NJ_G0018207.1 mouse_genomes_project 10 135246819 135287624 - MGP_C57BL6NJ_P0027787 Kif5a protein_coding protein_coding MGP_C57BL6NJ_T0025573.1 MGP_C57BL6NJ_G0017593.1 mouse_genomes_project 10 43605521 43621281 - MGP_C57BL6NJ_P0025573 1700021F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0025574.1 MGP_C57BL6NJ_G0017593.1 mouse_genomes_project 10 43605533 43621255 - MGP_C57BL6NJ_P0025574 1700021F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0025575.1 MGP_C57BL6NJ_G0017593.1 mouse_genomes_project 10 43605559 43606244 - 1700021F05Rik protein_coding processed_transcript MGP_C57BL6NJ_T0025576.1 MGP_C57BL6NJ_G0017593.1 mouse_genomes_project 10 43613549 43621281 - 1700021F05Rik protein_coding processed_transcript MGP_C57BL6NJ_T0012717.1 MGP_C57BL6NJ_G0010762.1 mouse_genomes_project 10 64655762 64656388 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026779.1 MGP_C57BL6NJ_G0017914.1 mouse_genomes_project 10 84261892 84264284 + MGP_C57BL6NJ_P0026779 Amh protein_coding protein_coding MGP_C57BL6NJ_T0026260.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79193874 79199995 - MGP_C57BL6NJ_P0026260 Dip2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026261.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79197222 79288063 - MGP_C57BL6NJ_P0026261 Dip2a protein_coding protein_coding MGP_C57BL6NJ_T0026262.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79197520 79220343 - Dip2a protein_coding retained_intron MGP_C57BL6NJ_T0026263.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79197537 79288063 - MGP_C57BL6NJ_P0026263 Dip2a protein_coding protein_coding MGP_C57BL6NJ_T0026264.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79197537 79288032 - MGP_C57BL6NJ_P0026264 Dip2a protein_coding protein_coding MGP_C57BL6NJ_T0026265.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79199158 79205058 - Dip2a protein_coding retained_intron MGP_C57BL6NJ_T0026266.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79217092 79226973 - MGP_C57BL6NJ_P0026266 Dip2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026267.1 MGP_C57BL6NJ_G0017775.1 mouse_genomes_project 10 79229790 79288004 - Dip2a protein_coding retained_intron MGP_C57BL6NJ_T0025709.1 MGP_C57BL6NJ_G0017648.1 mouse_genomes_project 10 60037994 60286151 + MGP_C57BL6NJ_P0025709 Sh3rf3 protein_coding protein_coding MGP_C57BL6NJ_T0025710.1 MGP_C57BL6NJ_G0017648.1 mouse_genomes_project 10 60038093 60382143 + MGP_C57BL6NJ_P0025710 Sh3rf3 protein_coding protein_coding MGP_C57BL6NJ_T0025711.1 MGP_C57BL6NJ_G0017648.1 mouse_genomes_project 10 60038694 60244736 + Sh3rf3 protein_coding retained_intron MGP_C57BL6NJ_T0025712.1 MGP_C57BL6NJ_G0017648.1 mouse_genomes_project 10 60304682 60345284 + Sh3rf3 protein_coding retained_intron MGP_C57BL6NJ_T0025713.1 MGP_C57BL6NJ_G0017648.1 mouse_genomes_project 10 60320532 60344762 + Sh3rf3 protein_coding processed_transcript MGP_C57BL6NJ_T0027998.1 MGP_C57BL6NJ_G0018276.1 mouse_genomes_project 10 137050239 137060094 + MGP_C57BL6NJ_P0027998 Mmp19 protein_coding protein_coding MGP_C57BL6NJ_T0009779.1 MGP_C57BL6NJ_G0007864.1 mouse_genomes_project 10 62565946 62566045 - Gm44308 miRNA miRNA MGP_C57BL6NJ_T0027367.1 MGP_C57BL6NJ_G0018059.1 mouse_genomes_project 10 98650127 98764237 + MGP_C57BL6NJ_P0027367 Fgd6 protein_coding protein_coding MGP_C57BL6NJ_T0027368.1 MGP_C57BL6NJ_G0018059.1 mouse_genomes_project 10 98688195 98706325 + Fgd6 protein_coding processed_transcript MGP_C57BL6NJ_T0027369.1 MGP_C57BL6NJ_G0018059.1 mouse_genomes_project 10 98752060 98758769 + Fgd6 protein_coding retained_intron MGP_C57BL6NJ_T0003192.1 MGP_C57BL6NJ_G0002970.1 mouse_genomes_project 10 70252505 70253360 - Gm16212 antisense antisense MGP_C57BL6NJ_T0003193.1 MGP_C57BL6NJ_G0002970.1 mouse_genomes_project 10 70253080 70253682 - Gm16212 antisense antisense MGP_C57BL6NJ_T0026553.1 MGP_C57BL6NJ_G0017861.1 mouse_genomes_project 10 83228406 83230210 + MGP_C57BL6NJ_P0026553 Cfd protein_coding protein_coding MGP_C57BL6NJ_T0009777.1 MGP_C57BL6NJ_G0007862.1 mouse_genomes_project 10 62341381 62341472 + Mir6408 miRNA miRNA MGP_C57BL6NJ_T0026002.1 MGP_C57BL6NJ_G0017726.1 mouse_genomes_project 10 71013470 71074831 + MGP_C57BL6NJ_P0026002 Tmem26 protein_coding protein_coding MGP_C57BL6NJ_T0027006.1 MGP_C57BL6NJ_G0017966.1 mouse_genomes_project 10 85219584 85221738 + MGP_C57BL6NJ_P0027006 protein_coding protein_coding MGP_C57BL6NJ_T0026826.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84599280 84618390 + MGP_C57BL6NJ_P0026826 Map2k2 protein_coding protein_coding MGP_C57BL6NJ_T0026827.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84599312 84617576 + MGP_C57BL6NJ_P0026827 Map2k2 protein_coding protein_coding MGP_C57BL6NJ_T0026828.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84599337 84617538 + MGP_C57BL6NJ_P0026828 Map2k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026829.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84599710 84612818 + MGP_C57BL6NJ_P0026829 Map2k2 protein_coding protein_coding MGP_C57BL6NJ_T0026830.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84612304 84613020 + Map2k2 protein_coding retained_intron MGP_C57BL6NJ_T0026831.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84614546 84616255 + Map2k2 protein_coding retained_intron MGP_C57BL6NJ_T0026832.1 MGP_C57BL6NJ_G0017930.1 mouse_genomes_project 10 84615852 84617620 + Map2k2 protein_coding retained_intron MGP_C57BL6NJ_T0026735.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83972597 83977553 - Rexo1 protein_coding retained_intron MGP_C57BL6NJ_T0026736.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83972600 83992879 - MGP_C57BL6NJ_P0026736 Rexo1 protein_coding protein_coding MGP_C57BL6NJ_T0026737.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83973339 83979638 - MGP_C57BL6NJ_P0026737 Rexo1 protein_coding protein_coding MGP_C57BL6NJ_T0026738.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83973948 83978519 - Rexo1 protein_coding retained_intron MGP_C57BL6NJ_T0026739.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83973948 83978187 - Rexo1 protein_coding retained_intron MGP_C57BL6NJ_T0026740.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83974291 83975989 - MGP_C57BL6NJ_P0026740 Rexo1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026741.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83977713 83981179 - MGP_C57BL6NJ_P0026741 Rexo1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026742.1 MGP_C57BL6NJ_G0017900.1 mouse_genomes_project 10 83979043 83981177 - Rexo1 protein_coding processed_transcript MGP_C57BL6NJ_T0026017.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71686964 71703268 - MGP_C57BL6NJ_P0026017 Cdk1 protein_coding protein_coding MGP_C57BL6NJ_T0026018.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71688653 71703233 - MGP_C57BL6NJ_P0026018 Cdk1 protein_coding protein_coding MGP_C57BL6NJ_T0026019.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71690928 71693059 - Cdk1 protein_coding retained_intron MGP_C57BL6NJ_T0026020.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71691059 71695840 - Cdk1 protein_coding retained_intron MGP_C57BL6NJ_T0026021.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71691095 71701160 - MGP_C57BL6NJ_P0026021 Cdk1 protein_coding protein_coding MGP_C57BL6NJ_T0026022.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71691133 71695764 - Cdk1 protein_coding retained_intron MGP_C57BL6NJ_T0026023.1 MGP_C57BL6NJ_G0017729.1 mouse_genomes_project 10 71695334 71703240 - Cdk1 protein_coding retained_intron MGP_C57BL6NJ_T0027009.1 MGP_C57BL6NJ_G0017969.1 mouse_genomes_project 10 85467432 85468953 - MGP_C57BL6NJ_P0027009 protein_coding protein_coding MGP_C57BL6NJ_T0027805.1 MGP_C57BL6NJ_G0018212.1 mouse_genomes_project 10 135351828 135358025 + MGP_C57BL6NJ_P0027805 Arhgap9 protein_coding protein_coding MGP_C57BL6NJ_T0009829.1 MGP_C57BL6NJ_G0007914.1 mouse_genomes_project 10 134656722 134656832 - Mir378d miRNA miRNA MGP_C57BL6NJ_T0027163.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91907889 91981343 + MGP_C57BL6NJ_P0027163 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027164.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91908689 91987972 + MGP_C57BL6NJ_P0027164 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027165.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91908879 91982249 + MGP_C57BL6NJ_P0027165 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027166.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91909111 91981341 + MGP_C57BL6NJ_P0027166 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027167.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91909232 91965801 + MGP_C57BL6NJ_P0027167 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027168.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91909651 91966346 + MGP_C57BL6NJ_P0027168 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027169.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91910227 91981347 + MGP_C57BL6NJ_P0027169 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0027170.1 MGP_C57BL6NJ_G0018019.1 mouse_genomes_project 10 91910950 91981325 + MGP_C57BL6NJ_P0027170 Igf1 protein_coding protein_coding MGP_C57BL6NJ_T0026454.1 MGP_C57BL6NJ_G0017833.1 mouse_genomes_project 10 82330741 82331821 + MGP_C57BL6NJ_P0026454 Olfr57 protein_coding protein_coding MGP_C57BL6NJ_T0026849.1 MGP_C57BL6NJ_G0017937.1 mouse_genomes_project 10 84719907 84749015 - MGP_C57BL6NJ_P0026849 Atcay protein_coding protein_coding MGP_C57BL6NJ_T0026850.1 MGP_C57BL6NJ_G0017937.1 mouse_genomes_project 10 84719907 84748967 - MGP_C57BL6NJ_P0026850 Atcay protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026851.1 MGP_C57BL6NJ_G0017937.1 mouse_genomes_project 10 84726541 84730004 - Atcay protein_coding retained_intron MGP_C57BL6NJ_T0025639.1 MGP_C57BL6NJ_G0017621.1 mouse_genomes_project 10 53181292 53193161 + MGP_C57BL6NJ_P0025639 Nepn protein_coding protein_coding MGP_C57BL6NJ_T0025640.1 MGP_C57BL6NJ_G0017621.1 mouse_genomes_project 10 53183922 53196812 + MGP_C57BL6NJ_P0025640 Nepn protein_coding protein_coding MGP_C57BL6NJ_T0027429.1 MGP_C57BL6NJ_G0018084.1 mouse_genomes_project 10 104410999 104413264 - MGP_C57BL6NJ_P0027429 Phxr2 protein_coding protein_coding MGP_C57BL6NJ_T0027189.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92474971 92512057 + MGP_C57BL6NJ_P0027189 Gnptab protein_coding protein_coding MGP_C57BL6NJ_T0027190.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92475063 92512014 + MGP_C57BL6NJ_P0027190 Gnptab protein_coding protein_coding MGP_C57BL6NJ_T0027191.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92475063 92545954 + MGP_C57BL6NJ_P0027191 Gnptab protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027192.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92475065 92545963 + MGP_C57BL6NJ_P0027192 Gnptab protein_coding protein_coding MGP_C57BL6NJ_T0027193.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92527160 92530965 + Gnptab protein_coding processed_transcript MGP_C57BL6NJ_T0027194.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92531037 92539495 + Gnptab protein_coding processed_transcript MGP_C57BL6NJ_T0027195.1 MGP_C57BL6NJ_G0018025.1 mouse_genomes_project 10 92534676 92535362 + Gnptab protein_coding retained_intron MGP_C57BL6NJ_T0025553.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42859256 42934694 + MGP_C57BL6NJ_P0025553 Scml4 protein_coding protein_coding MGP_C57BL6NJ_T0025554.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42859380 42938508 + MGP_C57BL6NJ_P0025554 Scml4 protein_coding protein_coding MGP_C57BL6NJ_T0025555.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42864227 42934559 + MGP_C57BL6NJ_P0025555 Scml4 protein_coding protein_coding MGP_C57BL6NJ_T0025556.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42902851 42939286 + MGP_C57BL6NJ_P0025556 Scml4 protein_coding protein_coding MGP_C57BL6NJ_T0025557.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42913022 42965406 + MGP_C57BL6NJ_P0025557 Scml4 protein_coding protein_coding MGP_C57BL6NJ_T0025558.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42938484 42966432 + Scml4 protein_coding retained_intron MGP_C57BL6NJ_T0025559.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42939062 42952338 + Scml4 protein_coding retained_intron MGP_C57BL6NJ_T0025560.1 MGP_C57BL6NJ_G0017587.1 mouse_genomes_project 10 42944021 42966383 + Scml4 protein_coding processed_transcript MGP_C57BL6NJ_T0025582.1 MGP_C57BL6NJ_G0017597.1 mouse_genomes_project 10 44022416 44068750 + MGP_C57BL6NJ_P0025582 Rtn4ip1 protein_coding protein_coding MGP_C57BL6NJ_T0025583.1 MGP_C57BL6NJ_G0017597.1 mouse_genomes_project 10 44022998 44068759 + MGP_C57BL6NJ_P0025583 Rtn4ip1 protein_coding protein_coding MGP_C57BL6NJ_T0012730.1 MGP_C57BL6NJ_G0010775.1 mouse_genomes_project 10 101476225 101476414 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025009.1 MGP_C57BL6NJ_G0017407.1 mouse_genomes_project 10 8090043 8103230 - MGP_C57BL6NJ_P0025009 Rab32 protein_coding protein_coding MGP_C57BL6NJ_T0027532.1 MGP_C57BL6NJ_G0018118.1 mouse_genomes_project 10 117627345 117630403 + MGP_C57BL6NJ_P0027532 Bbs10 protein_coding protein_coding MGP_C57BL6NJ_T0025621.1 MGP_C57BL6NJ_G0017613.1 mouse_genomes_project 10 52346994 52367629 - MGP_C57BL6NJ_P0025621 Gprc6a protein_coding protein_coding MGP_C57BL6NJ_T0027138.1 MGP_C57BL6NJ_G0018010.1 mouse_genomes_project 10 90603947 90605390 + MGP_C57BL6NJ_P0027138 Gm5174 protein_coding protein_coding MGP_C57BL6NJ_T0027671.1 MGP_C57BL6NJ_G0018166.1 mouse_genomes_project 10 127457735 127525314 - MGP_C57BL6NJ_P0027671 Irak3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027672.1 MGP_C57BL6NJ_G0018166.1 mouse_genomes_project 10 127458287 127525275 - MGP_C57BL6NJ_P0027672 Irak3 protein_coding protein_coding MGP_C57BL6NJ_T0027673.1 MGP_C57BL6NJ_G0018166.1 mouse_genomes_project 10 127480741 127493588 - Irak3 protein_coding processed_transcript MGP_C57BL6NJ_T0027674.1 MGP_C57BL6NJ_G0018166.1 mouse_genomes_project 10 127486670 127525403 - Irak3 protein_coding retained_intron MGP_C57BL6NJ_T0027376.1 MGP_C57BL6NJ_G0018062.1 mouse_genomes_project 10 98945255 98950218 - MGP_C57BL6NJ_P0027376 Gm4792 protein_coding protein_coding MGP_C57BL6NJ_T0027377.1 MGP_C57BL6NJ_G0018062.1 mouse_genomes_project 10 98948538 98950122 - Gm4792 protein_coding retained_intron MGP_C57BL6NJ_T0027754.1 MGP_C57BL6NJ_G0018195.1 mouse_genomes_project 10 135046511 135048280 + MGP_C57BL6NJ_P0027754 Mettl1 protein_coding protein_coding MGP_C57BL6NJ_T0027755.1 MGP_C57BL6NJ_G0018195.1 mouse_genomes_project 10 135047029 135051653 + MGP_C57BL6NJ_P0027755 Mettl1 protein_coding protein_coding MGP_C57BL6NJ_T0027756.1 MGP_C57BL6NJ_G0018195.1 mouse_genomes_project 10 135047054 135049100 + Mettl1 protein_coding retained_intron MGP_C57BL6NJ_T0012680.1 MGP_C57BL6NJ_G0010725.1 mouse_genomes_project 10 1387292 1388564 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026948.1 MGP_C57BL6NJ_G0017958.1 mouse_genomes_project 10 85075433 85091871 - MGP_C57BL6NJ_P0026948 Gna11 protein_coding protein_coding MGP_C57BL6NJ_T0026949.1 MGP_C57BL6NJ_G0017958.1 mouse_genomes_project 10 85076996 85078720 - Gna11 protein_coding retained_intron MGP_C57BL6NJ_T0026950.1 MGP_C57BL6NJ_G0017958.1 mouse_genomes_project 10 85079811 85081812 - Gna11 protein_coding retained_intron MGP_C57BL6NJ_T0026232.1 MGP_C57BL6NJ_G0017764.1 mouse_genomes_project 10 78787536 78790080 + MGP_C57BL6NJ_P0026232 Derl3 protein_coding protein_coding MGP_C57BL6NJ_T0026852.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84751325 84772691 + MGP_C57BL6NJ_P0026852 Zfr2 protein_coding protein_coding MGP_C57BL6NJ_T0026853.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84751325 84755724 + MGP_C57BL6NJ_P0026853 Zfr2 protein_coding protein_coding MGP_C57BL6NJ_T0026854.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84751346 84755748 + Zfr2 protein_coding processed_transcript MGP_C57BL6NJ_T0026855.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84751346 84762985 + Zfr2 protein_coding retained_intron MGP_C57BL6NJ_T0026856.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84751357 84772689 + Zfr2 protein_coding retained_intron MGP_C57BL6NJ_T0026857.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84768983 84772280 + MGP_C57BL6NJ_P0026857 Zfr2 protein_coding protein_coding MGP_C57BL6NJ_T0026858.1 MGP_C57BL6NJ_G0017938.1 mouse_genomes_project 10 84769618 84771114 + Zfr2 protein_coding retained_intron MGP_C57BL6NJ_T0026219.1 MGP_C57BL6NJ_G0017758.1 mouse_genomes_project 10 78643028 78654136 - MGP_C57BL6NJ_P0026219 Gm20441 protein_coding protein_coding MGP_C57BL6NJ_T0099720.1 MGP_C57BL6NJ_G0037766.1 mouse_genomes_project 10 115517234 115517340 - Gm23041 snRNA snRNA MGP_C57BL6NJ_T0025448.1 MGP_C57BL6NJ_G0017556.1 mouse_genomes_project 10 39724079 39753287 - MGP_C57BL6NJ_P0025448 Mfsd4b1 protein_coding protein_coding MGP_C57BL6NJ_T0025449.1 MGP_C57BL6NJ_G0017556.1 mouse_genomes_project 10 39734988 39753178 - Mfsd4b1 protein_coding processed_transcript MGP_C57BL6NJ_T0027529.1 MGP_C57BL6NJ_G0018116.1 mouse_genomes_project 10 117237582 117308227 - MGP_C57BL6NJ_P0027529 Zdhhc17 protein_coding protein_coding MGP_C57BL6NJ_T0027530.1 MGP_C57BL6NJ_G0018116.1 mouse_genomes_project 10 117258289 117308164 - MGP_C57BL6NJ_P0027530 Zdhhc17 protein_coding protein_coding MGP_C57BL6NJ_T0101004.1 MGP_C57BL6NJ_G0039050.1 mouse_genomes_project 10 137664986 137665827 + Gm25764 snoRNA snoRNA MGP_C57BL6NJ_T0027239.1 MGP_C57BL6NJ_G0018036.1 mouse_genomes_project 10 93794575 93851307 - MGP_C57BL6NJ_P0027239 Slc17a8 protein_coding protein_coding MGP_C57BL6NJ_T0009806.1 MGP_C57BL6NJ_G0007891.1 mouse_genomes_project 10 96488282 96488382 - Mir135a-2 miRNA miRNA MGP_C57BL6NJ_T0027409.1 MGP_C57BL6NJ_G0018069.1 mouse_genomes_project 10 100251808 100275673 - MGP_C57BL6NJ_P0027409 Mrpl42 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026457.1 MGP_C57BL6NJ_G0017836.1 mouse_genomes_project 10 82544983 82595291 + MGP_C57BL6NJ_P0026457 protein_coding protein_coding MGP_C57BL6NJ_T0027991.1 MGP_C57BL6NJ_G0018270.1 mouse_genomes_project 10 136911919 136915951 - MGP_C57BL6NJ_P0027991 Suox protein_coding protein_coding MGP_C57BL6NJ_T0028025.1 MGP_C57BL6NJ_G0018290.1 mouse_genomes_project 10 137348933 137351170 - MGP_C57BL6NJ_P0028025 protein_coding protein_coding MGP_C57BL6NJ_T0027675.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127525405 127527031 + Tmbim4 protein_coding processed_transcript MGP_C57BL6NJ_T0027676.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127525427 127527024 + Tmbim4 protein_coding processed_transcript MGP_C57BL6NJ_T0027677.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127525473 127544949 + MGP_C57BL6NJ_P0027677 Tmbim4 protein_coding protein_coding MGP_C57BL6NJ_T0027678.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127526466 127527024 + Tmbim4 protein_coding processed_transcript MGP_C57BL6NJ_T0027679.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127535366 127552020 + MGP_C57BL6NJ_P0027679 Tmbim4 protein_coding protein_coding MGP_C57BL6NJ_T0027680.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127535396 127545104 + MGP_C57BL6NJ_P0027680 Tmbim4 protein_coding protein_coding MGP_C57BL6NJ_T0027681.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127535409 127551942 + MGP_C57BL6NJ_P0027681 Tmbim4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027682.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127548075 127551842 + Tmbim4 protein_coding retained_intron MGP_C57BL6NJ_T0027683.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127549221 127551375 + Tmbim4 protein_coding retained_intron MGP_C57BL6NJ_T0027684.1 MGP_C57BL6NJ_G0018167.1 mouse_genomes_project 10 127549221 127552020 + Tmbim4 protein_coding retained_intron MGP_C57BL6NJ_T0003220.1 MGP_C57BL6NJ_G0002992.1 mouse_genomes_project 10 86838484 86841373 - 1700025N21Rik antisense antisense MGP_C57BL6NJ_T0027562.1 MGP_C57BL6NJ_G0018134.1 mouse_genomes_project 10 122196209 122250685 + MGP_C57BL6NJ_P0027562 Zfc3h1 protein_coding protein_coding MGP_C57BL6NJ_T0027563.1 MGP_C57BL6NJ_G0018134.1 mouse_genomes_project 10 122244026 122250684 + Zfc3h1 protein_coding retained_intron MGP_C57BL6NJ_T0027564.1 MGP_C57BL6NJ_G0018134.1 mouse_genomes_project 10 122245228 122248787 + Zfc3h1 protein_coding retained_intron MGP_C57BL6NJ_T0027565.1 MGP_C57BL6NJ_G0018134.1 mouse_genomes_project 10 122248991 122249675 + Zfc3h1 protein_coding retained_intron MGP_C57BL6NJ_T0025842.1 MGP_C57BL6NJ_G0017686.1 mouse_genomes_project 10 63664707 63670251 + MGP_C57BL6NJ_P0025842 Gm5424 protein_coding protein_coding MGP_C57BL6NJ_T0028098.1 MGP_C57BL6NJ_G0018344.1 mouse_genomes_project 10 138829913 138880678 + MGP_C57BL6NJ_P0028098 Tespa1 protein_coding protein_coding MGP_C57BL6NJ_T0026251.1 MGP_C57BL6NJ_G0017772.1 mouse_genomes_project 10 79071720 79114514 + MGP_C57BL6NJ_P0026251 Slc5a4a protein_coding protein_coding MGP_C57BL6NJ_T0026581.1 MGP_C57BL6NJ_G0017871.1 mouse_genomes_project 10 83353570 83372640 + MGP_C57BL6NJ_P0026581 Abca7 protein_coding protein_coding MGP_C57BL6NJ_T0026582.1 MGP_C57BL6NJ_G0017871.1 mouse_genomes_project 10 83354652 83372621 + MGP_C57BL6NJ_P0026582 Abca7 protein_coding protein_coding MGP_C57BL6NJ_T0026583.1 MGP_C57BL6NJ_G0017871.1 mouse_genomes_project 10 83354691 83372636 + MGP_C57BL6NJ_P0026583 Abca7 protein_coding protein_coding MGP_C57BL6NJ_T0025190.1 MGP_C57BL6NJ_G0017455.1 mouse_genomes_project 10 19207991 19347090 + MGP_C57BL6NJ_P0025190 Ahi1 protein_coding protein_coding MGP_C57BL6NJ_T0025191.1 MGP_C57BL6NJ_G0017455.1 mouse_genomes_project 10 19305945 19347090 + MGP_C57BL6NJ_P0025191 Ahi1 protein_coding protein_coding MGP_C57BL6NJ_T0100970.1 MGP_C57BL6NJ_G0039016.1 mouse_genomes_project 10 59928587 59928663 - Gm25055 snoRNA snoRNA MGP_C57BL6NJ_T0026647.1 MGP_C57BL6NJ_G0017881.1 mouse_genomes_project 10 83541562 83543763 + MGP_C57BL6NJ_P0026647 1600002K03Rik protein_coding protein_coding MGP_C57BL6NJ_T0028079.1 MGP_C57BL6NJ_G0018328.1 mouse_genomes_project 10 138268011 138272829 - MGP_C57BL6NJ_P0028079 Olfr812 protein_coding protein_coding MGP_C57BL6NJ_T0028080.1 MGP_C57BL6NJ_G0018328.1 mouse_genomes_project 10 138268011 138269054 - MGP_C57BL6NJ_P0028080 Olfr812 protein_coding protein_coding MGP_C57BL6NJ_T0028085.1 MGP_C57BL6NJ_G0018333.1 mouse_genomes_project 10 138409060 138410017 - MGP_C57BL6NJ_P0028085 Olfr818 protein_coding protein_coding MGP_C57BL6NJ_T0028086.1 MGP_C57BL6NJ_G0018333.1 mouse_genomes_project 10 138409302 138413057 - MGP_C57BL6NJ_P0028086 Olfr818 protein_coding protein_coding MGP_C57BL6NJ_T0099675.1 MGP_C57BL6NJ_G0037721.1 mouse_genomes_project 10 23595256 23595363 + Gm23410 snRNA snRNA MGP_C57BL6NJ_T0009834.1 MGP_C57BL6NJ_G0007919.1 mouse_genomes_project 10 136593991 136594060 + Mir6914 miRNA miRNA MGP_C57BL6NJ_T0028045.1 MGP_C57BL6NJ_G0018304.1 mouse_genomes_project 10 137847059 137847902 + MGP_C57BL6NJ_P0028045 Olfr787 protein_coding protein_coding MGP_C57BL6NJ_T0102720.1 MGP_C57BL6NJ_G0040515.1 mouse_genomes_project 10 137326134 137337621 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0028089.1 MGP_C57BL6NJ_G0018336.1 mouse_genomes_project 10 138494949 138496010 + MGP_C57BL6NJ_P0028089 Olfr820 protein_coding protein_coding MGP_C57BL6NJ_T0006250.1 MGP_C57BL6NJ_G0005227.1 mouse_genomes_project 10 39568826 39570300 - Gm26824 lincRNA lincRNA MGP_C57BL6NJ_T0025137.1 MGP_C57BL6NJ_G0017438.1 mouse_genomes_project 10 16675734 16840109 - MGP_C57BL6NJ_P0025137 Arfgef3 protein_coding protein_coding MGP_C57BL6NJ_T0026679.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83698084 83721812 + MGP_C57BL6NJ_P0026679 Apc2 protein_coding protein_coding MGP_C57BL6NJ_T0026680.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83701178 83704449 + MGP_C57BL6NJ_P0026680 Apc2 protein_coding protein_coding MGP_C57BL6NJ_T0026681.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83702934 83705443 + Apc2 protein_coding retained_intron MGP_C57BL6NJ_T0026682.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83703121 83704435 + MGP_C57BL6NJ_P0026682 Apc2 protein_coding protein_coding MGP_C57BL6NJ_T0026683.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83703122 83704494 + MGP_C57BL6NJ_P0026683 Apc2 protein_coding protein_coding MGP_C57BL6NJ_T0026684.1 MGP_C57BL6NJ_G0017888.1 mouse_genomes_project 10 83703907 83721805 + MGP_C57BL6NJ_P0026684 Apc2 protein_coding protein_coding MGP_C57BL6NJ_T0006232.1 MGP_C57BL6NJ_G0005214.1 mouse_genomes_project 10 8818216 8858216 - 4930432B10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006233.1 MGP_C57BL6NJ_G0005214.1 mouse_genomes_project 10 8828640 8858438 - 4930432B10Rik lincRNA lincRNA MGP_C57BL6NJ_T0027552.1 MGP_C57BL6NJ_G0018127.1 mouse_genomes_project 10 119503047 119505702 + MGP_C57BL6NJ_P0027552 Gm26596 protein_coding protein_coding MGP_C57BL6NJ_T0026801.1 MGP_C57BL6NJ_G0017923.1 mouse_genomes_project 10 84402531 84404645 + MGP_C57BL6NJ_P0026801 Gadd45b protein_coding protein_coding MGP_C57BL6NJ_T0025999.1 MGP_C57BL6NJ_G0017724.1 mouse_genomes_project 10 70322590 70523657 - MGP_C57BL6NJ_P0025999 Arid5b protein_coding protein_coding MGP_C57BL6NJ_T0012726.1 MGP_C57BL6NJ_G0010771.1 mouse_genomes_project 10 84426894 84427151 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025099.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12495557 12558060 + MGP_C57BL6NJ_P0025099 Nmbr protein_coding protein_coding MGP_C57BL6NJ_T0025100.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12495563 12544613 + Nmbr protein_coding processed_transcript MGP_C57BL6NJ_T0025101.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12495575 12550308 + Nmbr protein_coding processed_transcript MGP_C57BL6NJ_T0025102.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12495587 12558579 + MGP_C57BL6NJ_P0025102 Nmbr protein_coding protein_coding MGP_C57BL6NJ_T0025103.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12495593 12511633 + Nmbr protein_coding retained_intron MGP_C57BL6NJ_T0025105.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12551445 12562129 + MGP_C57BL6NJ_P0025105 Nmbr protein_coding protein_coding MGP_C57BL6NJ_T0025106.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12551507 12561862 + MGP_C57BL6NJ_P0025106 Nmbr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025107.1 MGP_C57BL6NJ_G0017427.1 mouse_genomes_project 10 12551507 12561862 + MGP_C57BL6NJ_P0025107 Nmbr protein_coding protein_coding MGP_C57BL6NJ_T0012721.1 MGP_C57BL6NJ_G0010766.1 mouse_genomes_project 10 77654963 77655395 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012723.1 MGP_C57BL6NJ_G0010768.1 mouse_genomes_project 10 78839926 78840319 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025357.1 MGP_C57BL6NJ_G0017521.1 mouse_genomes_project 10 30627537 30752919 - MGP_C57BL6NJ_P0025357 Rnf217 protein_coding protein_coding MGP_C57BL6NJ_T0099670.1 MGP_C57BL6NJ_G0037716.1 mouse_genomes_project 10 9999954 10000118 + Gm23680 snRNA snRNA MGP_C57BL6NJ_T0026444.1 MGP_C57BL6NJ_G0017828.1 mouse_genomes_project 10 82121005 82140092 + MGP_C57BL6NJ_P0026444 Olfr8 protein_coding protein_coding MGP_C57BL6NJ_T0024988.1 MGP_C57BL6NJ_G0017401.1 mouse_genomes_project 10 5594446 5920262 - MGP_C57BL6NJ_P0024988 Ust protein_coding protein_coding MGP_C57BL6NJ_T0009789.1 MGP_C57BL6NJ_G0007874.1 mouse_genomes_project 10 81676607 81676670 - Mir6908 miRNA miRNA MGP_C57BL6NJ_T0026649.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83611631 83629096 + MGP_C57BL6NJ_P0026649 Mum1 protein_coding protein_coding MGP_C57BL6NJ_T0026650.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83611852 83629093 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026651.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83611869 83617885 + MGP_C57BL6NJ_P0026651 Mum1 protein_coding protein_coding MGP_C57BL6NJ_T0026652.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83611877 83629091 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026653.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83611948 83614369 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026654.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83619398 83629096 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026655.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83619399 83622319 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026656.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83619464 83629094 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026657.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83621315 83625597 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026658.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83626742 83629093 + Mum1 protein_coding retained_intron MGP_C57BL6NJ_T0026659.1 MGP_C57BL6NJ_G0017883.1 mouse_genomes_project 10 83627804 83629093 + Mum1 protein_coding processed_transcript MGP_C57BL6NJ_T0027356.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98548613 98585367 - MGP_C57BL6NJ_P0027356 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027357.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98572380 98649944 - MGP_C57BL6NJ_P0027357 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027358.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98578958 98649875 - MGP_C57BL6NJ_P0027358 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027359.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98582174 98649832 - MGP_C57BL6NJ_P0027359 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027360.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98582631 98649869 - MGP_C57BL6NJ_P0027360 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027361.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98596790 98609396 - MGP_C57BL6NJ_P0027361 Vezt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027362.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98599511 98649904 - MGP_C57BL6NJ_P0027362 Vezt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027363.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98605935 98649928 - MGP_C57BL6NJ_P0027363 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027364.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98609332 98634838 - MGP_C57BL6NJ_P0027364 Vezt protein_coding protein_coding MGP_C57BL6NJ_T0027365.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98614217 98649876 - Vezt protein_coding retained_intron MGP_C57BL6NJ_T0027366.1 MGP_C57BL6NJ_G0018058.1 mouse_genomes_project 10 98616399 98649794 - Vezt protein_coding processed_transcript MGP_C57BL6NJ_T0025690.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59439605 59455553 + MGP_C57BL6NJ_P0025690 Gcc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025691.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59439627 59490811 + MGP_C57BL6NJ_P0025691 Gcc2 protein_coding protein_coding MGP_C57BL6NJ_T0025692.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59439663 59491169 + MGP_C57BL6NJ_P0025692 Gcc2 protein_coding protein_coding MGP_C57BL6NJ_T0025693.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59439810 59455425 + MGP_C57BL6NJ_P0025693 Gcc2 protein_coding protein_coding MGP_C57BL6NJ_T0025694.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59439988 59454136 + Gcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0025695.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59459535 59462384 + Gcc2 protein_coding retained_intron MGP_C57BL6NJ_T0025696.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59461046 59467064 + MGP_C57BL6NJ_P0025696 Gcc2 protein_coding protein_coding MGP_C57BL6NJ_T0025697.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59471504 59478332 + Gcc2 protein_coding retained_intron MGP_C57BL6NJ_T0025698.1 MGP_C57BL6NJ_G0017641.1 mouse_genomes_project 10 59483973 59491158 + Gcc2 protein_coding retained_intron MGP_C57BL6NJ_T0009832.1 MGP_C57BL6NJ_G0007917.1 mouse_genomes_project 10 136246277 136246355 + Mir677 miRNA miRNA MGP_C57BL6NJ_T0026089.1 MGP_C57BL6NJ_G0017737.1 mouse_genomes_project 10 73744068 73756794 - MGP_C57BL6NJ_P0026089 Tfam protein_coding protein_coding MGP_C57BL6NJ_T0026090.1 MGP_C57BL6NJ_G0017737.1 mouse_genomes_project 10 73747050 73753835 - Tfam protein_coding processed_transcript MGP_C57BL6NJ_T0026091.1 MGP_C57BL6NJ_G0017737.1 mouse_genomes_project 10 73747061 73756794 - MGP_C57BL6NJ_P0026091 Tfam protein_coding protein_coding MGP_C57BL6NJ_T0026092.1 MGP_C57BL6NJ_G0017737.1 mouse_genomes_project 10 73747116 73756192 - MGP_C57BL6NJ_P0026092 Tfam protein_coding protein_coding MGP_C57BL6NJ_T0026093.1 MGP_C57BL6NJ_G0017737.1 mouse_genomes_project 10 73747720 73755556 - MGP_C57BL6NJ_P0026093 Tfam protein_coding protein_coding MGP_C57BL6NJ_T0101005.1 MGP_C57BL6NJ_G0039051.1 mouse_genomes_project 10 138111121 138111245 + Gm24717 snoRNA snoRNA MGP_C57BL6NJ_T0027506.1 MGP_C57BL6NJ_G0018111.1 mouse_genomes_project 10 114420896 114509304 + MGP_C57BL6NJ_P0027506 Pawr protein_coding protein_coding MGP_C57BL6NJ_T0027099.1 MGP_C57BL6NJ_G0017999.1 mouse_genomes_project 10 88951295 89009553 - MGP_C57BL6NJ_P0027099 Cry1 protein_coding protein_coding MGP_C57BL6NJ_T0027893.1 MGP_C57BL6NJ_G0018240.1 mouse_genomes_project 10 136226339 136230126 + protein_coding retained_intron MGP_C57BL6NJ_T0000953.1 MGP_C57BL6NJ_G0000864.1 mouse_genomes_project 10 87798538 87799008 + TEC TEC MGP_C57BL6NJ_T0027335.1 MGP_C57BL6NJ_G0018053.1 mouse_genomes_project 10 98135305 98144003 - MGP_C57BL6NJ_P0027335 Snrpf protein_coding protein_coding MGP_C57BL6NJ_T0100956.1 MGP_C57BL6NJ_G0039002.1 mouse_genomes_project 10 26355602 26355674 + Gm23353 snoRNA snoRNA MGP_C57BL6NJ_T0026534.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83190658 83206678 - MGP_C57BL6NJ_P0026534 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0026537.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83195621 83206474 - Plppr3 protein_coding retained_intron MGP_C57BL6NJ_T0026538.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83195621 83206678 - Plppr3 protein_coding retained_intron MGP_C57BL6NJ_T0026539.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83195621 83206742 - MGP_C57BL6NJ_P0026539 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0026540.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83197252 83198122 - Plppr3 protein_coding retained_intron MGP_C57BL6NJ_T0026541.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83197272 83206332 - MGP_C57BL6NJ_P0026541 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0026542.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83197278 83206516 - MGP_C57BL6NJ_P0026542 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0026543.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83197694 83206497 - Plppr3 protein_coding processed_transcript MGP_C57BL6NJ_T0026544.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83197748 83206507 - MGP_C57BL6NJ_P0026544 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0026545.1 MGP_C57BL6NJ_G0017858.1 mouse_genomes_project 10 83198299 83206478 - MGP_C57BL6NJ_P0026545 Plppr3 protein_coding protein_coding MGP_C57BL6NJ_T0012735.1 MGP_C57BL6NJ_G0010780.1 mouse_genomes_project 10 112084891 112085284 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026312.1 MGP_C57BL6NJ_G0017788.1 mouse_genomes_project 10 80036237 80166191 - MGP_C57BL6NJ_P0026312 Col18a1 protein_coding protein_coding MGP_C57BL6NJ_T0026313.1 MGP_C57BL6NJ_G0017788.1 mouse_genomes_project 10 80036240 80105400 - MGP_C57BL6NJ_P0026313 Col18a1 protein_coding protein_coding MGP_C57BL6NJ_T0026314.1 MGP_C57BL6NJ_G0017788.1 mouse_genomes_project 10 80037075 80105429 - MGP_C57BL6NJ_P0026314 Col18a1 protein_coding protein_coding MGP_C57BL6NJ_T0026315.1 MGP_C57BL6NJ_G0017788.1 mouse_genomes_project 10 80068578 80077312 - MGP_C57BL6NJ_P0026315 Col18a1 protein_coding protein_coding MGP_C57BL6NJ_T0026316.1 MGP_C57BL6NJ_G0017788.1 mouse_genomes_project 10 80084295 80105670 - MGP_C57BL6NJ_P0026316 Col18a1 protein_coding protein_coding MGP_C57BL6NJ_T0099668.1 MGP_C57BL6NJ_G0037714.1 mouse_genomes_project 10 6044286 6044392 + Gm24374 snRNA snRNA MGP_C57BL6NJ_T0027780.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135208473 135214708 - MGP_C57BL6NJ_P0027780 Dtx3 protein_coding protein_coding MGP_C57BL6NJ_T0027781.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135208473 135214708 - MGP_C57BL6NJ_P0027781 Dtx3 protein_coding protein_coding MGP_C57BL6NJ_T0027782.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135208767 135214726 - MGP_C57BL6NJ_P0027782 Dtx3 protein_coding protein_coding MGP_C57BL6NJ_T0027783.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135208950 135213465 - MGP_C57BL6NJ_P0027783 Dtx3 protein_coding protein_coding MGP_C57BL6NJ_T0027784.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135211138 135214727 - MGP_C57BL6NJ_P0027784 Dtx3 protein_coding protein_coding MGP_C57BL6NJ_T0027785.1 MGP_C57BL6NJ_G0018205.1 mouse_genomes_project 10 135211667 135214718 - Dtx3 protein_coding retained_intron MGP_C57BL6NJ_T0006314.1 MGP_C57BL6NJ_G0005269.1 mouse_genomes_project 10 117953351 117961580 - 4933440J02Rik lincRNA lincRNA MGP_C57BL6NJ_T0028099.1 MGP_C57BL6NJ_G0018345.1 mouse_genomes_project 10 138907868 138915843 - MGP_C57BL6NJ_P0028099 protein_coding protein_coding MGP_C57BL6NJ_T0027531.1 MGP_C57BL6NJ_G0018117.1 mouse_genomes_project 10 117483063 117621846 + MGP_C57BL6NJ_P0027531 Osbpl8 protein_coding protein_coding MGP_C57BL6NJ_T0027472.1 MGP_C57BL6NJ_G0018097.1 mouse_genomes_project 10 108716414 108737648 - MGP_C57BL6NJ_P0027472 Alx1 protein_coding protein_coding MGP_C57BL6NJ_T0027473.1 MGP_C57BL6NJ_G0018097.1 mouse_genomes_project 10 108716415 108737376 - MGP_C57BL6NJ_P0027473 Alx1 protein_coding protein_coding MGP_C57BL6NJ_T0027474.1 MGP_C57BL6NJ_G0018097.1 mouse_genomes_project 10 108716719 108731138 - Alx1 protein_coding processed_transcript MGP_C57BL6NJ_T0026363.1 MGP_C57BL6NJ_G0017800.1 mouse_genomes_project 10 80810103 80810466 + MGP_C57BL6NJ_P0026363 Gm10142 protein_coding protein_coding MGP_C57BL6NJ_T0025590.1 MGP_C57BL6NJ_G0017601.1 mouse_genomes_project 10 45285279 45380935 + MGP_C57BL6NJ_P0025590 Prep protein_coding protein_coding MGP_C57BL6NJ_T0027440.1 MGP_C57BL6NJ_G0018090.1 mouse_genomes_project 10 105868640 105926397 - MGP_C57BL6NJ_P0027440 Tmtc3 protein_coding protein_coding MGP_C57BL6NJ_T0027441.1 MGP_C57BL6NJ_G0018090.1 mouse_genomes_project 10 105873082 105926394 - MGP_C57BL6NJ_P0027441 Tmtc3 protein_coding protein_coding MGP_C57BL6NJ_T0027442.1 MGP_C57BL6NJ_G0018090.1 mouse_genomes_project 10 105900199 105926386 - Tmtc3 protein_coding retained_intron MGP_C57BL6NJ_T0027443.1 MGP_C57BL6NJ_G0018090.1 mouse_genomes_project 10 105901418 105926314 - MGP_C57BL6NJ_P0027443 Tmtc3 protein_coding protein_coding MGP_C57BL6NJ_T0027444.1 MGP_C57BL6NJ_G0018090.1 mouse_genomes_project 10 105902754 105926373 - MGP_C57BL6NJ_P0027444 Tmtc3 protein_coding protein_coding MGP_C57BL6NJ_T0027411.1 MGP_C57BL6NJ_G0018071.1 mouse_genomes_project 10 100324654 100343413 - MGP_C57BL6NJ_P0027411 Nudt4 protein_coding protein_coding MGP_C57BL6NJ_T0003196.1 MGP_C57BL6NJ_G0002973.1 mouse_genomes_project 10 78832587 78835554 - Gm867 antisense antisense MGP_C57BL6NJ_T0026601.1 MGP_C57BL6NJ_G0017875.1 mouse_genomes_project 10 83418194 83451388 - MGP_C57BL6NJ_P0026601 Sbno2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0026602.1 MGP_C57BL6NJ_G0017875.1 mouse_genomes_project 10 83418194 83468582 - MGP_C57BL6NJ_P0026602 Sbno2 protein_coding protein_coding MGP_C57BL6NJ_T0027558.1 MGP_C57BL6NJ_G0018130.1 mouse_genomes_project 10 121987810 122045410 - MGP_C57BL6NJ_P0027558 Tbc1d15 protein_coding protein_coding MGP_C57BL6NJ_T0024855.1 MGP_C57BL6NJ_G0017374.1 mouse_genomes_project 10 922216 1135824 + MGP_C57BL6NJ_P0024855 Mthfd1l protein_coding protein_coding MGP_C57BL6NJ_T0024856.1 MGP_C57BL6NJ_G0017374.1 mouse_genomes_project 10 922229 1147440 + MGP_C57BL6NJ_P0024856 Mthfd1l protein_coding protein_coding MGP_C57BL6NJ_T0024857.1 MGP_C57BL6NJ_G0017374.1 mouse_genomes_project 10 922242 1135824 + MGP_C57BL6NJ_P0024857 Mthfd1l protein_coding protein_coding MGP_C57BL6NJ_T0024858.1 MGP_C57BL6NJ_G0017374.1 mouse_genomes_project 10 986429 1004304 + Mthfd1l protein_coding processed_transcript MGP_C57BL6NJ_T0024983.1 MGP_C57BL6NJ_G0017399.1 mouse_genomes_project 10 5184490 5238077 + MGP_C57BL6NJ_P0024983 Zc3h12d protein_coding protein_coding MGP_C57BL6NJ_T0011528.1 MGP_C57BL6NJ_G0009613.1 mouse_genomes_project 10 42248183 42248428 + Gm23533 misc_RNA misc_RNA MGP_C57BL6NJ_T0027777.1 MGP_C57BL6NJ_G0018204.1 mouse_genomes_project 10 135200512 135206443 - MGP_C57BL6NJ_P0027777 Arhgef25 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027778.1 MGP_C57BL6NJ_G0018204.1 mouse_genomes_project 10 135200515 135208150 - MGP_C57BL6NJ_P0027778 Arhgef25 protein_coding protein_coding MGP_C57BL6NJ_T0027779.1 MGP_C57BL6NJ_G0018204.1 mouse_genomes_project 10 135200515 135207919 - MGP_C57BL6NJ_P0027779 Arhgef25 protein_coding protein_coding MGP_C57BL6NJ_T0026086.1 MGP_C57BL6NJ_G0017736.1 mouse_genomes_project 10 73418125 73670191 - MGP_C57BL6NJ_P0026086 Bicc1 protein_coding protein_coding MGP_C57BL6NJ_T0026087.1 MGP_C57BL6NJ_G0017736.1 mouse_genomes_project 10 73418137 73670108 - MGP_C57BL6NJ_P0026087 Bicc1 protein_coding protein_coding MGP_C57BL6NJ_T0026088.1 MGP_C57BL6NJ_G0017736.1 mouse_genomes_project 10 73430496 73444476 - Bicc1 protein_coding retained_intron MGP_C57BL6NJ_T0099729.1 MGP_C57BL6NJ_G0037775.1 mouse_genomes_project 10 136497564 136497670 - Gm23241 snRNA snRNA MGP_C57BL6NJ_T0028087.1 MGP_C57BL6NJ_G0018334.1 mouse_genomes_project 10 138429678 138437780 - MGP_C57BL6NJ_P0028087 Olfr819 protein_coding protein_coding MGP_C57BL6NJ_T0025443.1 MGP_C57BL6NJ_G0017555.1 mouse_genomes_project 10 39674542 39707328 - MGP_C57BL6NJ_P0025443 Mfsd4b5 protein_coding protein_coding MGP_C57BL6NJ_T0025444.1 MGP_C57BL6NJ_G0017555.1 mouse_genomes_project 10 39685492 39707331 - MGP_C57BL6NJ_P0025444 Mfsd4b5 protein_coding protein_coding MGP_C57BL6NJ_T0025445.1 MGP_C57BL6NJ_G0017555.1 mouse_genomes_project 10 39687482 39707324 - MGP_C57BL6NJ_P0025445 Mfsd4b5 protein_coding protein_coding MGP_C57BL6NJ_T0025446.1 MGP_C57BL6NJ_G0017555.1 mouse_genomes_project 10 39691182 39707325 - MGP_C57BL6NJ_P0025446 Mfsd4b5 protein_coding protein_coding MGP_C57BL6NJ_T0025447.1 MGP_C57BL6NJ_G0017555.1 mouse_genomes_project 10 39692157 39692811 - MGP_C57BL6NJ_P0025447 Mfsd4b5 protein_coding protein_coding MGP_C57BL6NJ_T0101002.1 MGP_C57BL6NJ_G0039048.1 mouse_genomes_project 10 136246280 136246352 + Mir677 snoRNA snoRNA MGP_C57BL6NJ_T0003202.1 MGP_C57BL6NJ_G0002978.1 mouse_genomes_project 10 79500095 79516485 - 4930483K19Rik antisense antisense MGP_C57BL6NJ_T0000958.1 MGP_C57BL6NJ_G0000868.1 mouse_genomes_project 10 110968097 110968804 - TEC TEC MGP_C57BL6NJ_T0102141.1 MGP_C57BL6NJ_G0040176.1 mouse_genomes_project 10 8138561 8148930 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102142.1 MGP_C57BL6NJ_G0040176.1 mouse_genomes_project 10 8145667 8146664 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0012743.1 MGP_C57BL6NJ_G0010788.1 mouse_genomes_project 10 136068894 136072443 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0027325.1 MGP_C57BL6NJ_G0018050.1 mouse_genomes_project 10 98014629 98060280 + MGP_C57BL6NJ_P0027325 Hal protein_coding protein_coding MGP_C57BL6NJ_T0027326.1 MGP_C57BL6NJ_G0018050.1 mouse_genomes_project 10 98014664 98054643 + MGP_C57BL6NJ_P0027326 Hal protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027327.1 MGP_C57BL6NJ_G0018050.1 mouse_genomes_project 10 98022266 98026525 + Hal protein_coding retained_intron MGP_C57BL6NJ_T0027328.1 MGP_C57BL6NJ_G0018050.1 mouse_genomes_project 10 98026992 98054845 + Hal protein_coding processed_transcript MGP_C57BL6NJ_T0027433.1 MGP_C57BL6NJ_G0018085.1 mouse_genomes_project 10 104566710 104570968 + MGP_C57BL6NJ_P0027433 Dusp6 protein_coding protein_coding MGP_C57BL6NJ_T0025638.1 MGP_C57BL6NJ_G0017620.1 mouse_genomes_project 10 53150282 53150369 + MGP_C57BL6NJ_P0025638 Gm26741 protein_coding protein_coding MGP_C57BL6NJ_T0099695.1 MGP_C57BL6NJ_G0037741.1 mouse_genomes_project 10 64603049 64603155 - Gm26479 snRNA snRNA MGP_C57BL6NJ_T0026170.1 MGP_C57BL6NJ_G0017746.1 mouse_genomes_project 10 77868742 77995632 + MGP_C57BL6NJ_P0026170 Bcr protein_coding protein_coding MGP_C57BL6NJ_T0028082.1 MGP_C57BL6NJ_G0018330.1 mouse_genomes_project 10 138365082 138366033 - MGP_C57BL6NJ_P0028082 Olfr815 protein_coding protein_coding MGP_C57BL6NJ_T0025474.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41341260 41352086 + MGP_C57BL6NJ_P0025474 Mical1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025475.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41341364 41352083 + MGP_C57BL6NJ_P0025475 Mical1 protein_coding protein_coding MGP_C57BL6NJ_T0025476.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41341386 41350276 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025477.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41341418 41352083 + MGP_C57BL6NJ_P0025477 Mical1 protein_coding protein_coding MGP_C57BL6NJ_T0025478.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41341427 41352083 + MGP_C57BL6NJ_P0025478 Mical1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025479.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41342129 41343236 + MGP_C57BL6NJ_P0025479 Mical1 protein_coding protein_coding MGP_C57BL6NJ_T0025480.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41343528 41346216 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025481.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41345038 41346209 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025482.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41346757 41347767 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025483.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41349124 41350122 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025485.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41351161 41351771 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0025486.1 MGP_C57BL6NJ_G0017571.1 mouse_genomes_project 10 41351422 41352081 + Mical1 protein_coding retained_intron MGP_C57BL6NJ_T0027942.1 MGP_C57BL6NJ_G0018255.1 mouse_genomes_project 10 136571319 136577116 - MGP_C57BL6NJ_P0027942 Coq10a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027943.1 MGP_C57BL6NJ_G0018255.1 mouse_genomes_project 10 136571327 136578446 - MGP_C57BL6NJ_P0027943 Coq10a protein_coding protein_coding MGP_C57BL6NJ_T0100960.1 MGP_C57BL6NJ_G0039006.1 mouse_genomes_project 10 37788106 37788238 + Gm24889 snoRNA snoRNA MGP_C57BL6NJ_T0025379.1 MGP_C57BL6NJ_G0017536.1 mouse_genomes_project 10 33553597 33556677 + MGP_C57BL6NJ_P0025379 Tspyl1 protein_coding protein_coding MGP_C57BL6NJ_T0027439.1 MGP_C57BL6NJ_G0018089.1 mouse_genomes_project 10 105722734 105723349 - MGP_C57BL6NJ_P0027439 Gm9476 protein_coding protein_coding MGP_C57BL6NJ_T0025461.1 MGP_C57BL6NJ_G0017562.1 mouse_genomes_project 10 40368204 40409914 + MGP_C57BL6NJ_P0025461 Slc22a16 protein_coding protein_coding MGP_C57BL6NJ_T0025462.1 MGP_C57BL6NJ_G0017562.1 mouse_genomes_project 10 40368481 40409910 + MGP_C57BL6NJ_P0025462 Slc22a16 protein_coding protein_coding MGP_C57BL6NJ_T0027838.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135604065 135691784 - MGP_C57BL6NJ_P0027838 protein_coding protein_coding MGP_C57BL6NJ_T0027839.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135604503 135605502 - protein_coding retained_intron MGP_C57BL6NJ_T0027840.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135605139 135606047 - protein_coding retained_intron MGP_C57BL6NJ_T0027841.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135608100 135609113 - protein_coding retained_intron MGP_C57BL6NJ_T0027842.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135612299 135615822 - MGP_C57BL6NJ_P0027842 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027843.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135649117 135652674 - protein_coding retained_intron MGP_C57BL6NJ_T0027844.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135652517 135654249 - MGP_C57BL6NJ_P0027844 protein_coding protein_coding MGP_C57BL6NJ_T0027845.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135658318 135691784 - protein_coding retained_intron MGP_C57BL6NJ_T0027846.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135659847 135691606 - MGP_C57BL6NJ_P0027846 protein_coding protein_coding MGP_C57BL6NJ_T0027847.1 MGP_C57BL6NJ_G0018221.1 mouse_genomes_project 10 135670575 135691558 - MGP_C57BL6NJ_P0027847 protein_coding protein_coding MGP_C57BL6NJ_T0027627.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124786892 124808453 - MGP_C57BL6NJ_P0027627 Mdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027628.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124786892 124808453 - MGP_C57BL6NJ_P0027628 Mdm2 protein_coding protein_coding MGP_C57BL6NJ_T0027629.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124786899 124807717 - MGP_C57BL6NJ_P0027629 Mdm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027630.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124788113 124808380 - Mdm2 protein_coding retained_intron MGP_C57BL6NJ_T0027631.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124788247 124789525 - Mdm2 protein_coding retained_intron MGP_C57BL6NJ_T0027632.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124792518 124807773 - Mdm2 protein_coding processed_transcript MGP_C57BL6NJ_T0027633.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124793786 124808406 - Mdm2 protein_coding processed_transcript MGP_C57BL6NJ_T0027634.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124799926 124807987 - Mdm2 protein_coding processed_transcript MGP_C57BL6NJ_T0027635.1 MGP_C57BL6NJ_G0018155.1 mouse_genomes_project 10 124807412 124808409 - Mdm2 protein_coding retained_intron MGP_C57BL6NJ_T0026810.1 MGP_C57BL6NJ_G0017926.1 mouse_genomes_project 10 84512758 84524493 - MGP_C57BL6NJ_P0026810 Slc39a3 protein_coding protein_coding MGP_C57BL6NJ_T0026811.1 MGP_C57BL6NJ_G0017926.1 mouse_genomes_project 10 84512760 84524375 - MGP_C57BL6NJ_P0026811 Slc39a3 protein_coding protein_coding MGP_C57BL6NJ_T0026812.1 MGP_C57BL6NJ_G0017926.1 mouse_genomes_project 10 84512761 84518119 - MGP_C57BL6NJ_P0026812 Slc39a3 protein_coding protein_coding MGP_C57BL6NJ_T0026813.1 MGP_C57BL6NJ_G0017926.1 mouse_genomes_project 10 84518063 84524349 - Slc39a3 protein_coding processed_transcript MGP_C57BL6NJ_T0026814.1 MGP_C57BL6NJ_G0017926.1 mouse_genomes_project 10 84518089 84524317 - Slc39a3 protein_coding processed_transcript MGP_C57BL6NJ_T0025584.1 MGP_C57BL6NJ_G0017598.1 mouse_genomes_project 10 44072756 44286898 - MGP_C57BL6NJ_P0025584 Aim1 protein_coding protein_coding MGP_C57BL6NJ_T0012682.1 MGP_C57BL6NJ_G0010727.1 mouse_genomes_project 10 5157867 5158510 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026870.1 MGP_C57BL6NJ_G0017940.1 mouse_genomes_project 10 84785831 84788053 - MGP_C57BL6NJ_P0026870 Mrpl54 protein_coding protein_coding MGP_C57BL6NJ_T0026871.1 MGP_C57BL6NJ_G0017940.1 mouse_genomes_project 10 84786548 84788043 - Mrpl54 protein_coding retained_intron MGP_C57BL6NJ_T0025136.1 MGP_C57BL6NJ_G0017437.1 mouse_genomes_project 10 16626653 16635206 - MGP_C57BL6NJ_P0025136 Hebp2 protein_coding protein_coding MGP_C57BL6NJ_T0027458.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107243773 107632510 + Mgat4c protein_coding retained_intron MGP_C57BL6NJ_T0027459.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107243773 108044061 + MGP_C57BL6NJ_P0027459 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027460.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107243927 108028950 + Mgat4c protein_coding processed_transcript MGP_C57BL6NJ_T0027461.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107243927 108029568 + MGP_C57BL6NJ_P0027461 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027462.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107244032 108037683 + MGP_C57BL6NJ_P0027462 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027463.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107797909 108040971 + MGP_C57BL6NJ_P0027463 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027464.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107797909 108044064 + MGP_C57BL6NJ_P0027464 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027465.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107797929 107925718 + Mgat4c protein_coding processed_transcript MGP_C57BL6NJ_T0027466.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107797940 108029495 + MGP_C57BL6NJ_P0027466 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027467.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107797956 107925719 + Mgat4c protein_coding processed_transcript MGP_C57BL6NJ_T0027468.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 107798130 108044064 + MGP_C57BL6NJ_P0027468 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0027469.1 MGP_C57BL6NJ_G0018094.1 mouse_genomes_project 10 108025706 108042908 + MGP_C57BL6NJ_P0027469 Mgat4c protein_coding protein_coding MGP_C57BL6NJ_T0025812.1 MGP_C57BL6NJ_G0017672.1 mouse_genomes_project 10 62647293 62744852 - MGP_C57BL6NJ_P0025812 Adamts14 protein_coding protein_coding MGP_C57BL6NJ_T0025813.1 MGP_C57BL6NJ_G0017672.1 mouse_genomes_project 10 62648649 62744656 - MGP_C57BL6NJ_P0025813 Adamts14 protein_coding protein_coding MGP_C57BL6NJ_T0025577.1 MGP_C57BL6NJ_G0017594.1 mouse_genomes_project 10 43669583 43674675 + MGP_C57BL6NJ_P0025577 Cd24a protein_coding protein_coding MGP_C57BL6NJ_T0025773.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61709883 61739794 + MGP_C57BL6NJ_P0025773 Vsir protein_coding protein_coding MGP_C57BL6NJ_T0025774.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61709937 61723049 + Vsir protein_coding processed_transcript MGP_C57BL6NJ_T0025775.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61709939 61722831 + Vsir protein_coding processed_transcript MGP_C57BL6NJ_T0025776.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61710016 61726149 + Vsir protein_coding retained_intron MGP_C57BL6NJ_T0025777.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61710044 61734878 + MGP_C57BL6NJ_P0025777 Vsir protein_coding protein_coding MGP_C57BL6NJ_T0025778.1 MGP_C57BL6NJ_G0017665.1 mouse_genomes_project 10 61710054 61739778 + MGP_C57BL6NJ_P0025778 Vsir protein_coding protein_coding MGP_C57BL6NJ_T0025815.1 MGP_C57BL6NJ_G0017674.1 mouse_genomes_project 10 62811700 62880449 - MGP_C57BL6NJ_P0025815 Pald1 protein_coding protein_coding MGP_C57BL6NJ_T0098802.1 MGP_C57BL6NJ_G0036866.1 mouse_genomes_project 10 80974897 80975563 - pseudogene pseudogene MGP_C57BL6NJ_T0025926.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705119 64715190 + Rufy2 protein_coding retained_intron MGP_C57BL6NJ_T0025927.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705135 64742868 + MGP_C57BL6NJ_P0025927 Rufy2 protein_coding protein_coding MGP_C57BL6NJ_T0025928.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705138 64752361 + MGP_C57BL6NJ_P0025928 Rufy2 protein_coding protein_coding MGP_C57BL6NJ_T0025929.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705148 64755614 + MGP_C57BL6NJ_P0025929 Rufy2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025930.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705158 64742841 + MGP_C57BL6NJ_P0025930 Rufy2 protein_coding protein_coding MGP_C57BL6NJ_T0025931.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64705189 64740621 + MGP_C57BL6NJ_P0025931 Rufy2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0025932.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64706324 64714067 + MGP_C57BL6NJ_P0025932 Rufy2 protein_coding protein_coding MGP_C57BL6NJ_T0025933.1 MGP_C57BL6NJ_G0017705.1 mouse_genomes_project 10 64740658 64746577 + Rufy2 protein_coding retained_intron MGP_C57BL6NJ_T0027722.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130256967 130474765 + Ppm1h protein_coding retained_intron MGP_C57BL6NJ_T0027723.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130256983 130521216 + MGP_C57BL6NJ_P0027723 Ppm1h protein_coding protein_coding MGP_C57BL6NJ_T0027724.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130256987 130546043 + MGP_C57BL6NJ_P0027724 Ppm1h protein_coding protein_coding MGP_C57BL6NJ_T0027725.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130335829 130406498 + Ppm1h protein_coding processed_transcript MGP_C57BL6NJ_T0027726.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130406270 130410863 + Ppm1h protein_coding retained_intron MGP_C57BL6NJ_T0027727.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130406428 130541541 + Ppm1h protein_coding retained_intron MGP_C57BL6NJ_T0027728.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130406473 130482200 + Ppm1h protein_coding processed_transcript MGP_C57BL6NJ_T0027729.1 MGP_C57BL6NJ_G0018184.1 mouse_genomes_project 10 130493214 130541702 + MGP_C57BL6NJ_P0027729 Ppm1h protein_coding protein_coding MGP_C57BL6NJ_T0026509.1 MGP_C57BL6NJ_G0017853.1 mouse_genomes_project 10 83095070 83101542 + MGP_C57BL6NJ_P0026509 Fstl3 protein_coding protein_coding MGP_C57BL6NJ_T0026510.1 MGP_C57BL6NJ_G0017853.1 mouse_genomes_project 10 83095090 83098005 + Fstl3 protein_coding retained_intron MGP_C57BL6NJ_T0026511.1 MGP_C57BL6NJ_G0017853.1 mouse_genomes_project 10 83099492 83101519 + Fstl3 protein_coding processed_transcript MGP_C57BL6NJ_T0025380.1 MGP_C57BL6NJ_G0017537.1 mouse_genomes_project 10 33559689 33590109 - Nt5dc1 protein_coding processed_transcript MGP_C57BL6NJ_T0025382.1 MGP_C57BL6NJ_G0017537.1 mouse_genomes_project 10 33575674 33712702 - MGP_C57BL6NJ_P0025382 Nt5dc1 protein_coding protein_coding MGP_C57BL6NJ_T0025383.1 MGP_C57BL6NJ_G0017537.1 mouse_genomes_project 10 33575674 33712689 - MGP_C57BL6NJ_P0025383 Nt5dc1 protein_coding protein_coding MGP_C57BL6NJ_T0025384.1 MGP_C57BL6NJ_G0017537.1 mouse_genomes_project 10 33576330 33712678 - Nt5dc1 protein_coding processed_transcript MGP_C57BL6NJ_T0025386.1 MGP_C57BL6NJ_G0017537.1 mouse_genomes_project 10 33685598 33712631 - MGP_C57BL6NJ_P0025386 Nt5dc1 protein_coding protein_coding MGP_C57BL6NJ_T0025112.1 MGP_C57BL6NJ_G0017432.1 mouse_genomes_project 10 16057242 16069117 - MGP_C57BL6NJ_P0025112 Abracl protein_coding protein_coding MGP_C57BL6NJ_T0024881.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1664904 1956255 + Esr1 protein_coding processed_transcript MGP_C57BL6NJ_T0024882.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1665300 2067624 + MGP_C57BL6NJ_P0024882 Esr1 protein_coding protein_coding MGP_C57BL6NJ_T0024883.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1665307 1739840 + Esr1 protein_coding retained_intron MGP_C57BL6NJ_T0024884.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1665324 1916035 + Esr1 protein_coding retained_intron MGP_C57BL6NJ_T0024885.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1665332 2065771 + MGP_C57BL6NJ_P0024885 Esr1 protein_coding protein_coding MGP_C57BL6NJ_T0024886.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1778104 2064034 + MGP_C57BL6NJ_P0024886 Esr1 protein_coding protein_coding MGP_C57BL6NJ_T0024887.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1778104 2023520 + MGP_C57BL6NJ_P0024887 Esr1 protein_coding protein_coding MGP_C57BL6NJ_T0024888.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1780595 1850764 + Esr1 protein_coding processed_transcript MGP_C57BL6NJ_T0024889.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1976179 2059940 + Esr1 protein_coding processed_transcript MGP_C57BL6NJ_T0024890.1 MGP_C57BL6NJ_G0017380.1 mouse_genomes_project 10 1995442 2063666 + Esr1 protein_coding processed_transcript MGP_C57BL6NJ_T0027740.1 MGP_C57BL6NJ_G0018191.1 mouse_genomes_project 10 134975093 134998441 + MGP_C57BL6NJ_P0027740 Ctdsp2 protein_coding protein_coding MGP_C57BL6NJ_T0027741.1 MGP_C57BL6NJ_G0018191.1 mouse_genomes_project 10 134993061 134998441 + MGP_C57BL6NJ_P0027741 Ctdsp2 protein_coding protein_coding MGP_C57BL6NJ_T0026873.1 MGP_C57BL6NJ_G0017942.1 mouse_genomes_project 10 84794329 84809155 - MGP_C57BL6NJ_P0026873 Tjp3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100966.1 MGP_C57BL6NJ_G0039012.1 mouse_genomes_project 10 45507489 45507618 - Gm26016 snoRNA snoRNA MGP_C57BL6NJ_T0027648.1 MGP_C57BL6NJ_G0018163.1 mouse_genomes_project 10 126421318 126464244 - MGP_C57BL6NJ_P0027648 Cand1 protein_coding protein_coding MGP_C57BL6NJ_T0027649.1 MGP_C57BL6NJ_G0018163.1 mouse_genomes_project 10 126428386 126430273 - Cand1 protein_coding retained_intron MGP_C57BL6NJ_T0027650.1 MGP_C57BL6NJ_G0018163.1 mouse_genomes_project 10 126433842 126434673 - Cand1 protein_coding retained_intron MGP_C57BL6NJ_T0027651.1 MGP_C57BL6NJ_G0018163.1 mouse_genomes_project 10 126438541 126463492 - MGP_C57BL6NJ_P0027651 Cand1 protein_coding protein_coding MGP_C57BL6NJ_T0025025.1 MGP_C57BL6NJ_G0017411.1 mouse_genomes_project 10 8858546 8877892 + MGP_C57BL6NJ_P0025025 Fbxo30 protein_coding protein_coding MGP_C57BL6NJ_T0025026.1 MGP_C57BL6NJ_G0017411.1 mouse_genomes_project 10 8858803 8875358 + MGP_C57BL6NJ_P0025026 Fbxo30 protein_coding protein_coding MGP_C57BL6NJ_T0011530.1 MGP_C57BL6NJ_G0009615.1 mouse_genomes_project 10 51523477 51523767 - Gm23883 misc_RNA misc_RNA MGP_C57BL6NJ_T0000959.1 MGP_C57BL6NJ_G0000869.1 mouse_genomes_project 10 113427964 113428903 - TEC TEC MGP_C57BL6NJ_T0026432.1 MGP_C57BL6NJ_G0017819.1 mouse_genomes_project 10 81668292 81697910 - MGP_C57BL6NJ_P0026432 Pdxk protein_coding protein_coding MGP_C57BL6NJ_T0026886.1 MGP_C57BL6NJ_G0017945.1 mouse_genomes_project 10 84857172 84864766 + MGP_C57BL6NJ_P0026886 Tbxa2r protein_coding protein_coding MGP_C57BL6NJ_T0003234.1 MGP_C57BL6NJ_G0003003.1 mouse_genomes_project 10 104473232 104478585 - Gm16239 antisense antisense MGP_C57BL6NJ_T0025469.1 MGP_C57BL6NJ_G0017568.1 mouse_genomes_project 10 41044107 41164290 - MGP_C57BL6NJ_P0025469 Fig4 protein_coding protein_coding MGP_C57BL6NJ_T0003195.1 MGP_C57BL6NJ_G0002972.1 mouse_genomes_project 10 73592323 73593099 + Gm15647 antisense antisense MGP_C57BL6NJ_T0028097.1 MGP_C57BL6NJ_G0018343.1 mouse_genomes_project 10 138761486 138775416 - MGP_C57BL6NJ_P0028097 Neurod4 protein_coding protein_coding MGP_C57BL6NJ_T0025645.1 MGP_C57BL6NJ_G0017625.1 mouse_genomes_project 10 54165921 54174139 + MGP_C57BL6NJ_P0025645 Pln protein_coding protein_coding MGP_C57BL6NJ_T0025646.1 MGP_C57BL6NJ_G0017625.1 mouse_genomes_project 10 54165921 54174139 + MGP_C57BL6NJ_P0025646 Pln protein_coding protein_coding MGP_C57BL6NJ_T0026220.1 MGP_C57BL6NJ_G0017759.1 mouse_genomes_project 10 78647297 78654596 - MGP_C57BL6NJ_P0026220 Gstt3 protein_coding protein_coding MGP_C57BL6NJ_T0026221.1 MGP_C57BL6NJ_G0017759.1 mouse_genomes_project 10 78647982 78650443 - Gstt3 protein_coding processed_transcript MGP_C57BL6NJ_T0026222.1 MGP_C57BL6NJ_G0017759.1 mouse_genomes_project 10 78648102 78654200 - MGP_C57BL6NJ_P0026222 Gstt3 protein_coding protein_coding MGP_C57BL6NJ_T0026223.1 MGP_C57BL6NJ_G0017759.1 mouse_genomes_project 10 78648582 78650047 - MGP_C57BL6NJ_P0026223 Gstt3 protein_coding protein_coding MGP_C57BL6NJ_T0026224.1 MGP_C57BL6NJ_G0017759.1 mouse_genomes_project 10 78649936 78654232 - MGP_C57BL6NJ_P0026224 Gstt3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027146.1 MGP_C57BL6NJ_G0018013.1 mouse_genomes_project 10 90680996 90683407 - MGP_C57BL6NJ_P0027146 Fabp3-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0099722.1 MGP_C57BL6NJ_G0037768.1 mouse_genomes_project 10 117444325 117444428 - Gm22101 snRNA snRNA MGP_C57BL6NJ_T0026493.1 MGP_C57BL6NJ_G0017849.1 mouse_genomes_project 10 83033695 83053165 + MGP_C57BL6NJ_P0026493 Hcn2 protein_coding protein_coding MGP_C57BL6NJ_T0006276.1 MGP_C57BL6NJ_G0005247.1 mouse_genomes_project 10 84011804 84013986 + Gm26710 lincRNA lincRNA MGP_C57BL6NJ_T0026418.1 MGP_C57BL6NJ_G0017815.1 mouse_genomes_project 10 81402986 81461010 - MGP_C57BL6NJ_P0026418 Trappc10 protein_coding protein_coding MGP_C57BL6NJ_T0012705.1 MGP_C57BL6NJ_G0010750.1 mouse_genomes_project 10 43363172 43363527 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025232.1 MGP_C57BL6NJ_G0017469.1 mouse_genomes_project 10 21626189 21884006 - MGP_C57BL6NJ_P0025232 Eya4 protein_coding protein_coding MGP_C57BL6NJ_T0025233.1 MGP_C57BL6NJ_G0017469.1 mouse_genomes_project 10 21626784 21883998 - MGP_C57BL6NJ_P0025233 Eya4 protein_coding protein_coding MGP_C57BL6NJ_T0025663.1 MGP_C57BL6NJ_G0017630.1 mouse_genomes_project 10 57022070 57257144 - MGP_C57BL6NJ_P0025663 Tbc1d32 protein_coding protein_coding MGP_C57BL6NJ_T0009835.1 MGP_C57BL6NJ_G0007920.1 mouse_genomes_project 10 136599985 136600054 + Mir6915 miRNA miRNA MGP_C57BL6NJ_T0009762.1 MGP_C57BL6NJ_G0007847.1 mouse_genomes_project 10 18496177 18496285 - Mir6413 miRNA miRNA MGP_C57BL6NJ_T0025622.1 MGP_C57BL6NJ_G0017614.1 mouse_genomes_project 10 52422425 52467750 + Rfx6 protein_coding retained_intron MGP_C57BL6NJ_T0025623.1 MGP_C57BL6NJ_G0017614.1 mouse_genomes_project 10 52422425 52476326 + MGP_C57BL6NJ_P0025623 Rfx6 protein_coding protein_coding MGP_C57BL6NJ_T0025624.1 MGP_C57BL6NJ_G0017614.1 mouse_genomes_project 10 52430187 52476326 + MGP_C57BL6NJ_P0025624 Rfx6 protein_coding protein_coding MGP_C57BL6NJ_T0012683.1 MGP_C57BL6NJ_G0010728.1 mouse_genomes_project 10 7884468 7885681 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026808.1 MGP_C57BL6NJ_G0017925.1 mouse_genomes_project 10 84495535 84501342 - MGP_C57BL6NJ_P0026808 Diras1 protein_coding protein_coding MGP_C57BL6NJ_T0026809.1 MGP_C57BL6NJ_G0017925.1 mouse_genomes_project 10 84498037 84501595 - MGP_C57BL6NJ_P0026809 Diras1 protein_coding protein_coding MGP_C57BL6NJ_T0003203.1 MGP_C57BL6NJ_G0002979.1 mouse_genomes_project 10 79519023 79524830 - Gm15343 antisense antisense MGP_C57BL6NJ_T0100944.1 MGP_C57BL6NJ_G0038990.1 mouse_genomes_project 10 8193588 8193719 + Gm23601 snoRNA snoRNA MGP_C57BL6NJ_T0012738.1 MGP_C57BL6NJ_G0010783.1 mouse_genomes_project 10 126075308 126076216 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0026231.1 MGP_C57BL6NJ_G0017763.1 mouse_genomes_project 10 78746588 78747486 - MGP_C57BL6NJ_P0026231 Mif protein_coding protein_coding MGP_C57BL6NJ_T0026775.1 MGP_C57BL6NJ_G0017913.1 mouse_genomes_project 10 84254842 84261569 + MGP_C57BL6NJ_P0026775 Sf3a2 protein_coding protein_coding MGP_C57BL6NJ_T0026776.1 MGP_C57BL6NJ_G0017913.1 mouse_genomes_project 10 84255376 84260652 + MGP_C57BL6NJ_P0026776 Sf3a2 protein_coding protein_coding MGP_C57BL6NJ_T0026777.1 MGP_C57BL6NJ_G0017913.1 mouse_genomes_project 10 84255613 84259046 + MGP_C57BL6NJ_P0026777 Sf3a2 protein_coding protein_coding MGP_C57BL6NJ_T0026778.1 MGP_C57BL6NJ_G0017913.1 mouse_genomes_project 10 84259144 84260662 + Sf3a2 protein_coding retained_intron MGP_C57BL6NJ_T0003200.1 MGP_C57BL6NJ_G0002977.1 mouse_genomes_project 10 79338065 79352057 + 1700094J05Rik antisense antisense MGP_C57BL6NJ_T0003201.1 MGP_C57BL6NJ_G0002977.1 mouse_genomes_project 10 79347795 79348163 + 1700094J05Rik antisense antisense MGP_C57BL6NJ_T0027096.1 MGP_C57BL6NJ_G0017996.1 mouse_genomes_project 10 88912122 88917599 - MGP_C57BL6NJ_P0027096 Fhl4 protein_coding protein_coding MGP_C57BL6NJ_T0006238.1 MGP_C57BL6NJ_G0005218.1 mouse_genomes_project 10 16292906 16295914 + Gm10827 lincRNA lincRNA MGP_C57BL6NJ_T0000952.1 MGP_C57BL6NJ_G0000863.1 mouse_genomes_project 10 83929976 83930831 + TEC TEC MGP_C57BL6NJ_T0099701.1 MGP_C57BL6NJ_G0037747.1 mouse_genomes_project 10 83252123 83252230 + Gm24019 snRNA snRNA MGP_C57BL6NJ_T0024843.1 MGP_C57BL6NJ_G0017370.1 mouse_genomes_project 10 2758 12464 + MGP_C57BL6NJ_P0024843 9230019H11Rik protein_coding protein_coding MGP_C57BL6NJ_T0017592.1 MGP_C57BL6NJ_G0015531.1 mouse_genomes_project 10 83181564 83185140 - E130317F20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0025104.1 MGP_C57BL6NJ_G0017428.1 mouse_genomes_project 10 12506804 12509396 - MGP_C57BL6NJ_P0025104 Gje1 protein_coding protein_coding MGP_C57BL6NJ_T0026561.1 MGP_C57BL6NJ_G0017863.1 mouse_genomes_project 10 83252981 83259832 - MGP_C57BL6NJ_P0026561 R3hdm4 protein_coding protein_coding MGP_C57BL6NJ_T0026562.1 MGP_C57BL6NJ_G0017863.1 mouse_genomes_project 10 83253166 83259908 - MGP_C57BL6NJ_P0026562 R3hdm4 protein_coding protein_coding MGP_C57BL6NJ_T0028077.1 MGP_C57BL6NJ_G0018326.1 mouse_genomes_project 10 138215201 138216207 - MGP_C57BL6NJ_P0028077 Olfr810 protein_coding protein_coding MGP_C57BL6NJ_T0017597.1 MGP_C57BL6NJ_G0015535.1 mouse_genomes_project 10 128269494 128275192 + Gm15910 processed_transcript processed_transcript MGP_C57BL6NJ_T0027148.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90797938 90984877 - MGP_C57BL6NJ_P0027148 Stab2 protein_coding protein_coding MGP_C57BL6NJ_T0027149.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90798061 90857801 - MGP_C57BL6NJ_P0027149 Stab2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027150.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90828204 90841620 - Stab2 protein_coding retained_intron MGP_C57BL6NJ_T0027151.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90830173 90851944 - Stab2 protein_coding retained_intron MGP_C57BL6NJ_T0027152.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90886387 90911437 - Stab2 protein_coding processed_transcript MGP_C57BL6NJ_T0027153.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90964702 90984864 - Stab2 protein_coding processed_transcript MGP_C57BL6NJ_T0027154.1 MGP_C57BL6NJ_G0018015.1 mouse_genomes_project 10 90966385 90984874 - Stab2 protein_coding processed_transcript MGP_C57BL6NJ_T0099713.1 MGP_C57BL6NJ_G0037759.1 mouse_genomes_project 10 96923149 96923211 + Gm25884 snRNA snRNA MGP_C57BL6NJ_T0025280.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 23908991 23980121 - Akap7 protein_coding processed_transcript MGP_C57BL6NJ_T0025281.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 23908991 23940667 - MGP_C57BL6NJ_P0025281 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0025282.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 23910023 24046444 - MGP_C57BL6NJ_P0025282 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0025283.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 23958354 24035723 - MGP_C57BL6NJ_P0025283 Akap7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0025284.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 24008328 24043380 - MGP_C57BL6NJ_P0025284 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0025285.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 24025413 24046387 - MGP_C57BL6NJ_P0025285 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0025286.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 24030007 24044353 - MGP_C57BL6NJ_P0025286 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0025287.1 MGP_C57BL6NJ_G0017495.1 mouse_genomes_project 10 24030108 24056591 - MGP_C57BL6NJ_P0025287 Akap7 protein_coding protein_coding MGP_C57BL6NJ_T0027774.1 MGP_C57BL6NJ_G0018202.1 mouse_genomes_project 10 135182908 135190142 + MGP_C57BL6NJ_P0027774 B4galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0027837.1 MGP_C57BL6NJ_G0018220.1 mouse_genomes_project 10 135587755 135598694 - MGP_C57BL6NJ_P0027837 Nxph4 protein_coding protein_coding MGP_C57BL6NJ_T0027735.1 MGP_C57BL6NJ_G0018188.1 mouse_genomes_project 10 133043535 133152251 - MGP_C57BL6NJ_P0027735 Slc16a7 protein_coding protein_coding MGP_C57BL6NJ_T0027736.1 MGP_C57BL6NJ_G0018188.1 mouse_genomes_project 10 133044565 133130488 - MGP_C57BL6NJ_P0027736 Slc16a7 protein_coding protein_coding MGP_C57BL6NJ_T0027698.1 MGP_C57BL6NJ_G0018175.1 mouse_genomes_project 10 128860147 128893770 + MGP_C57BL6NJ_P0027698 Gns protein_coding protein_coding MGP_C57BL6NJ_T0100953.1 MGP_C57BL6NJ_G0038999.1 mouse_genomes_project 10 22347424 22347498 - Snord100 snoRNA snoRNA MGP_C57BL6NJ_T0009783.1 MGP_C57BL6NJ_G0007868.1 mouse_genomes_project 10 78907986 78908078 + Mir6409 miRNA miRNA MGP_C57BL6NJ_T0027917.1 MGP_C57BL6NJ_G0018245.1 mouse_genomes_project 10 136388265 136390152 - MGP_C57BL6NJ_P0027917 Spryd4 protein_coding protein_coding MGP_C57BL6NJ_T0003181.1 MGP_C57BL6NJ_G0002961.1 mouse_genomes_project 10 43200590 43201313 + Gm29246 antisense antisense MGP_C57BL6NJ_T0027448.1 MGP_C57BL6NJ_G0018092.1 mouse_genomes_project 10 106016597 106038097 - MGP_C57BL6NJ_P0027448 4930430F08Rik protein_coding protein_coding MGP_C57BL6NJ_T0012729.1 MGP_C57BL6NJ_G0010774.1 mouse_genomes_project 10 98240118 98240582 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025790.1 MGP_C57BL6NJ_G0017668.1 mouse_genomes_project 10 62163259 62235829 - MGP_C57BL6NJ_P0025790 Unc5b protein_coding protein_coding MGP_C57BL6NJ_T0025728.1 MGP_C57BL6NJ_G0017655.1 mouse_genomes_project 10 60889021 60889357 + MGP_C57BL6NJ_P0025728 Gm10322 protein_coding protein_coding MGP_C57BL6NJ_T0025747.1 MGP_C57BL6NJ_G0017659.1 mouse_genomes_project 10 61305691 61321458 - MGP_C57BL6NJ_P0025747 Anapc16 protein_coding protein_coding MGP_C57BL6NJ_T0025748.1 MGP_C57BL6NJ_G0017659.1 mouse_genomes_project 10 61306681 61308677 - Anapc16 protein_coding processed_transcript MGP_C57BL6NJ_T0025749.1 MGP_C57BL6NJ_G0017659.1 mouse_genomes_project 10 61308659 61309374 - Anapc16 protein_coding retained_intron MGP_C57BL6NJ_T0025750.1 MGP_C57BL6NJ_G0017659.1 mouse_genomes_project 10 61313898 61316362 - Anapc16 protein_coding retained_intron MGP_C57BL6NJ_T0027757.1 MGP_C57BL6NJ_G0018196.1 mouse_genomes_project 10 135053535 135058255 + MGP_C57BL6NJ_P0027757 Cyp27b1 protein_coding protein_coding MGP_C57BL6NJ_T0027758.1 MGP_C57BL6NJ_G0018196.1 mouse_genomes_project 10 135053535 135058292 + MGP_C57BL6NJ_P0027758 Cyp27b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027759.1 MGP_C57BL6NJ_G0018196.1 mouse_genomes_project 10 135053956 135055152 + Cyp27b1 protein_coding processed_transcript MGP_C57BL6NJ_T0026822.1 MGP_C57BL6NJ_G0017929.1 mouse_genomes_project 10 84575887 84591131 - MGP_C57BL6NJ_P0026822 Creb3l3 protein_coding protein_coding MGP_C57BL6NJ_T0026823.1 MGP_C57BL6NJ_G0017929.1 mouse_genomes_project 10 84582218 84584851 - Creb3l3 protein_coding retained_intron MGP_C57BL6NJ_T0026824.1 MGP_C57BL6NJ_G0017929.1 mouse_genomes_project 10 84582898 84584182 - Creb3l3 protein_coding retained_intron MGP_C57BL6NJ_T0026825.1 MGP_C57BL6NJ_G0017929.1 mouse_genomes_project 10 84584906 84591011 - Creb3l3 protein_coding processed_transcript MGP_C57BL6NJ_T0100990.1 MGP_C57BL6NJ_G0039036.1 mouse_genomes_project 10 111807526 111807658 - Gm24237 snoRNA snoRNA MGP_C57BL6NJ_T0025464.1 MGP_C57BL6NJ_G0017564.1 mouse_genomes_project 10 40500939 40638862 + MGP_C57BL6NJ_P0025464 Mettl24 protein_coding protein_coding MGP_C57BL6NJ_T0098801.1 MGP_C57BL6NJ_G0036865.1 mouse_genomes_project 10 78451482 78451994 - pseudogene pseudogene MGP_C57BL6NJ_T0012708.1 MGP_C57BL6NJ_G0010753.1 mouse_genomes_project 10 43938786 43939640 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0025825.1 MGP_C57BL6NJ_G0017681.1 mouse_genomes_project 10 63227560 63240546 + MGP_C57BL6NJ_P0025825 Sar1a protein_coding protein_coding MGP_C57BL6NJ_T0026951.1 MGP_C57BL6NJ_G0017959.1 mouse_genomes_project 10 85107922 85116520 + MGP_C57BL6NJ_P0026951 Aes protein_coding protein_coding MGP_C57BL6NJ_T0027919.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136415658 136440788 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027920.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136415667 136440708 + MGP_C57BL6NJ_P0027920 Timeless protein_coding protein_coding MGP_C57BL6NJ_T0027921.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136415669 136433975 + MGP_C57BL6NJ_P0027921 Timeless protein_coding protein_coding MGP_C57BL6NJ_T0027922.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136415693 136429554 + MGP_C57BL6NJ_P0027922 Timeless protein_coding protein_coding MGP_C57BL6NJ_T0027923.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136415712 136440797 + MGP_C57BL6NJ_P0027923 Timeless protein_coding protein_coding MGP_C57BL6NJ_T0027924.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136427779 136440564 + MGP_C57BL6NJ_P0027924 Timeless protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027925.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136428279 136429494 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027926.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136430217 136430889 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027927.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136430286 136431796 + Timeless protein_coding processed_transcript MGP_C57BL6NJ_T0027928.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136430507 136431574 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027929.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136435150 136435912 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027930.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136435205 136440795 + Timeless protein_coding processed_transcript MGP_C57BL6NJ_T0027931.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136437068 136437716 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0027932.1 MGP_C57BL6NJ_G0018247.1 mouse_genomes_project 10 136437474 136438228 + Timeless protein_coding retained_intron MGP_C57BL6NJ_T0025260.1 MGP_C57BL6NJ_G0017490.1 mouse_genomes_project 10 23273403 23276640 + MGP_C57BL6NJ_P0025260 Ctgf protein_coding protein_coding MGP_C57BL6NJ_T0025261.1 MGP_C57BL6NJ_G0017490.1 mouse_genomes_project 10 23273687 23276645 + MGP_C57BL6NJ_P0025261 Ctgf protein_coding protein_coding MGP_C57BL6NJ_T0025262.1 MGP_C57BL6NJ_G0017490.1 mouse_genomes_project 10 23273741 23274332 + MGP_C57BL6NJ_P0025262 Ctgf protein_coding protein_coding MGP_C57BL6NJ_T0026780.1 MGP_C57BL6NJ_G0017915.1 mouse_genomes_project 10 84265131 84268548 - MGP_C57BL6NJ_P0026780 Jsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0026781.1 MGP_C57BL6NJ_G0017915.1 mouse_genomes_project 10 84265133 84270155 - MGP_C57BL6NJ_P0026781 Jsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0026782.1 MGP_C57BL6NJ_G0017915.1 mouse_genomes_project 10 84265136 84270158 - MGP_C57BL6NJ_P0026782 Jsrp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026783.1 MGP_C57BL6NJ_G0017915.1 mouse_genomes_project 10 84266845 84270161 - MGP_C57BL6NJ_P0026783 Jsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0025256.1 MGP_C57BL6NJ_G0017487.1 mouse_genomes_project 10 22750499 22751546 - MGP_C57BL6NJ_P0025256 Taar9 protein_coding protein_coding MGP_C57BL6NJ_T0028024.1 MGP_C57BL6NJ_G0018289.1 mouse_genomes_project 10 137348905 137351170 - MGP_C57BL6NJ_P0028024 protein_coding protein_coding MGP_C57BL6NJ_T0025495.1 MGP_C57BL6NJ_G0017573.1 mouse_genomes_project 10 41355489 41383052 + MGP_C57BL6NJ_P0025495 Ppil6 protein_coding protein_coding MGP_C57BL6NJ_T0027963.1 MGP_C57BL6NJ_G0018261.1 mouse_genomes_project 10 136710440 136715394 - MGP_C57BL6NJ_P0027963 Myl6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0027964.1 MGP_C57BL6NJ_G0018261.1 mouse_genomes_project 10 136710442 136715458 - MGP_C57BL6NJ_P0027964 Myl6 protein_coding protein_coding MGP_C57BL6NJ_T0026213.1 MGP_C57BL6NJ_G0017755.1 mouse_genomes_project 10 78505039 78512429 - MGP_C57BL6NJ_P0026213 Susd2 protein_coding protein_coding MGP_C57BL6NJ_T0026214.1 MGP_C57BL6NJ_G0017755.1 mouse_genomes_project 10 78505039 78512429 - MGP_C57BL6NJ_P0026214 Susd2 protein_coding protein_coding MGP_C57BL6NJ_T0100996.1 MGP_C57BL6NJ_G0039042.1 mouse_genomes_project 10 123247196 123247333 + Gm26495 snoRNA snoRNA MGP_C57BL6NJ_T0026686.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83724819 83733276 - Pcsk4 protein_coding retained_intron MGP_C57BL6NJ_T0026687.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83724819 83733278 - MGP_C57BL6NJ_P0026687 Pcsk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0026688.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83724819 83733321 - MGP_C57BL6NJ_P0026688 Pcsk4 protein_coding protein_coding MGP_C57BL6NJ_T0026689.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83724823 83726664 - Pcsk4 protein_coding retained_intron MGP_C57BL6NJ_T0026690.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83724823 83726663 - Pcsk4 protein_coding retained_intron MGP_C57BL6NJ_T0026691.1 MGP_C57BL6NJ_G0017890.1 mouse_genomes_project 10 83725658 83733222 - MGP_C57BL6NJ_P0026691 Pcsk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0027240.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93870563 93926427 - MGP_C57BL6NJ_P0027240 Scyl2 protein_coding protein_coding MGP_C57BL6NJ_T0027241.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93871511 93886325 - Scyl2 protein_coding processed_transcript MGP_C57BL6NJ_T0027242.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93871794 93926410 - MGP_C57BL6NJ_P0027242 Scyl2 protein_coding protein_coding MGP_C57BL6NJ_T0027243.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93881605 93886029 - Scyl2 protein_coding retained_intron MGP_C57BL6NJ_T0027244.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93882603 93893471 - MGP_C57BL6NJ_P0027244 Scyl2 protein_coding protein_coding MGP_C57BL6NJ_T0027245.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93901614 93926410 - Scyl2 protein_coding retained_intron MGP_C57BL6NJ_T0027246.1 MGP_C57BL6NJ_G0018037.1 mouse_genomes_project 10 93909833 93926405 - Scyl2 protein_coding retained_intron MGP_C57BL6NJ_T0006267.1 MGP_C57BL6NJ_G0005240.1 mouse_genomes_project 10 68752202 68753147 + Gm28139 lincRNA lincRNA MGP_C57BL6NJ_T0026666.1 MGP_C57BL6NJ_G0017885.1 mouse_genomes_project 10 83644270 83647132 - MGP_C57BL6NJ_P0026666 Gamt protein_coding protein_coding MGP_C57BL6NJ_T0026667.1 MGP_C57BL6NJ_G0017885.1 mouse_genomes_project 10 83644283 83647088 - MGP_C57BL6NJ_P0026667 Gamt protein_coding protein_coding MGP_C57BL6NJ_T0026668.1 MGP_C57BL6NJ_G0017885.1 mouse_genomes_project 10 83644696 83647038 - Gamt protein_coding retained_intron MGP_C57BL6NJ_T0026669.1 MGP_C57BL6NJ_G0017885.1 mouse_genomes_project 10 83644912 83645409 - Gamt protein_coding retained_intron MGP_C57BL6NJ_T0026157.1 MGP_C57BL6NJ_G0017744.1 mouse_genomes_project 10 77767466 77820858 + MGP_C57BL6NJ_P0026157 Gnaz protein_coding protein_coding MGP_C57BL6NJ_T0026158.1 MGP_C57BL6NJ_G0017744.1 mouse_genomes_project 10 77767498 77794786 + Gnaz protein_coding processed_transcript MGP_C57BL6NJ_T0026159.1 MGP_C57BL6NJ_G0017744.1 mouse_genomes_project 10 77793582 77820849 + MGP_C57BL6NJ_P0026159 Gnaz protein_coding protein_coding MGP_C57BL6NJ_T0027806.1 MGP_C57BL6NJ_G0018213.1 mouse_genomes_project 10 135357970 135369716 - MGP_C57BL6NJ_P0027806 Gli1 protein_coding protein_coding MGP_C57BL6NJ_T0027796.1 MGP_C57BL6NJ_G0018210.1 mouse_genomes_project 10 135316971 135322486 + MGP_C57BL6NJ_P0027796 Ddit3 protein_coding protein_coding MGP_C57BL6NJ_T0027797.1 MGP_C57BL6NJ_G0018210.1 mouse_genomes_project 10 135316990 135322263 + MGP_C57BL6NJ_P0027797 Ddit3 protein_coding protein_coding MGP_C57BL6NJ_T0027798.1 MGP_C57BL6NJ_G0018210.1 mouse_genomes_project 10 135316991 135320780 + Ddit3 protein_coding retained_intron MGP_C57BL6NJ_T0027788.1 MGP_C57BL6NJ_G0018208.1 mouse_genomes_project 10 135290522 135307871 + MGP_C57BL6NJ_P0027788 Dctn2 protein_coding protein_coding MGP_C57BL6NJ_T0026332.1 MGP_C57BL6NJ_G0017792.1 mouse_genomes_project 10 80524935 80564198 - MGP_C57BL6NJ_P0026332 Fam207a protein_coding protein_coding MGP_C57BL6NJ_T0006309.1 MGP_C57BL6NJ_G0005265.1 mouse_genomes_project 10 104606892 104763412 + B530045E10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006310.1 MGP_C57BL6NJ_G0005265.1 mouse_genomes_project 10 104760886 104763412 + B530045E10Rik lincRNA lincRNA MGP_C57BL6NJ_T0027155.1 MGP_C57BL6NJ_G0018016.1 mouse_genomes_project 10 91044924 91224979 + MGP_C57BL6NJ_P0027155 1700113H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0027156.1 MGP_C57BL6NJ_G0018016.1 mouse_genomes_project 10 91044925 91224978 + MGP_C57BL6NJ_P0027156 1700113H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0027157.1 MGP_C57BL6NJ_G0018016.1 mouse_genomes_project 10 91200368 91224977 + MGP_C57BL6NJ_P0027157 1700113H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0003240.1 MGP_C57BL6NJ_G0003006.1 mouse_genomes_project 10 121542448 121557590 + Gm15723 antisense antisense MGP_C57BL6NJ_T0027144.1 MGP_C57BL6NJ_G0018012.1 mouse_genomes_project 10 90655582 90732095 + MGP_C57BL6NJ_P0027144 Ttc41 protein_coding protein_coding MGP_C57BL6NJ_T0027145.1 MGP_C57BL6NJ_G0018012.1 mouse_genomes_project 10 90655582 90673831 + MGP_C57BL6NJ_P0027145 Ttc41 protein_coding protein_coding MGP_C57BL6NJ_T0011549.1 MGP_C57BL6NJ_G0009634.1 mouse_genomes_project 10 137494864 137495169 - Gm25807 misc_RNA misc_RNA MGP_C57BL6NJ_T0088905.1 MGP_C57BL6NJ_G0033948.1 mouse_genomes_project 8 21353974 21381534 - MGP_C57BL6NJ_P0088905 Polb protein_coding protein_coding MGP_C57BL6NJ_T0089266.1 MGP_C57BL6NJ_G0034070.1 mouse_genomes_project 8 46069261 46095165 - MGP_C57BL6NJ_P0089266 Fam149a protein_coding protein_coding MGP_C57BL6NJ_T0089267.1 MGP_C57BL6NJ_G0034070.1 mouse_genomes_project 8 46069269 46118443 - MGP_C57BL6NJ_P0089267 Fam149a protein_coding protein_coding MGP_C57BL6NJ_T0089268.1 MGP_C57BL6NJ_G0034070.1 mouse_genomes_project 8 46071303 46095062 - MGP_C57BL6NJ_P0089268 Fam149a protein_coding protein_coding MGP_C57BL6NJ_T0089316.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46784697 46822930 + MGP_C57BL6NJ_P0089316 Lrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0089317.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46784702 46822661 + MGP_C57BL6NJ_P0089317 Lrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0089318.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46804612 46824752 + MGP_C57BL6NJ_P0089318 Lrp2bp protein_coding protein_coding MGP_C57BL6NJ_T0089319.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46804621 46822918 + MGP_C57BL6NJ_P0089319 Lrp2bp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089320.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46805760 46815584 + Lrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0089321.1 MGP_C57BL6NJ_G0034078.1 mouse_genomes_project 8 46817313 46824723 + Lrp2bp protein_coding processed_transcript MGP_C57BL6NJ_T0091119.1 MGP_C57BL6NJ_G0034662.1 mouse_genomes_project 8 124168112 124179334 - MGP_C57BL6NJ_P0091119 1700030J22Rik protein_coding protein_coding MGP_C57BL6NJ_T0088841.1 MGP_C57BL6NJ_G0033902.1 mouse_genomes_project 8 17035700 17038894 - MGP_C57BL6NJ_P0088841 Defb38 protein_coding protein_coding MGP_C57BL6NJ_T0090614.1 MGP_C57BL6NJ_G0034476.1 mouse_genomes_project 8 100067760 100104206 - MGP_C57BL6NJ_P0090614 Kifc3 protein_coding protein_coding MGP_C57BL6NJ_T0090615.1 MGP_C57BL6NJ_G0034476.1 mouse_genomes_project 8 100067766 100104270 - MGP_C57BL6NJ_P0090615 Kifc3 protein_coding protein_coding MGP_C57BL6NJ_T0009299.1 MGP_C57BL6NJ_G0007478.1 mouse_genomes_project 8 70772318 70794176 - lincRNA lincRNA MGP_C57BL6NJ_T0009300.1 MGP_C57BL6NJ_G0007478.1 mouse_genomes_project 8 70793213 70794390 - lincRNA lincRNA MGP_C57BL6NJ_T0088867.1 MGP_C57BL6NJ_G0033925.1 mouse_genomes_project 8 20455582 20463339 + MGP_C57BL6NJ_P0088867 Defb50 protein_coding protein_coding MGP_C57BL6NJ_T0091107.1 MGP_C57BL6NJ_G0034656.1 mouse_genomes_project 8 122752794 122777011 - MGP_C57BL6NJ_P0091107 Maf protein_coding protein_coding MGP_C57BL6NJ_T0091108.1 MGP_C57BL6NJ_G0034656.1 mouse_genomes_project 8 122771309 122777709 - MGP_C57BL6NJ_P0091108 Maf protein_coding protein_coding MGP_C57BL6NJ_T0016452.1 MGP_C57BL6NJ_G0014497.1 mouse_genomes_project 8 82565183 82566781 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089158.1 MGP_C57BL6NJ_G0034033.1 mouse_genomes_project 8 35745928 35747779 - MGP_C57BL6NJ_P0089158 Cldn23 protein_coding protein_coding MGP_C57BL6NJ_T0016456.1 MGP_C57BL6NJ_G0014501.1 mouse_genomes_project 8 84824231 84825143 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005544.1 MGP_C57BL6NJ_G0004693.1 mouse_genomes_project 8 112231075 112242622 + Gm16156 antisense antisense MGP_C57BL6NJ_T0002486.1 MGP_C57BL6NJ_G0002374.1 mouse_genomes_project 8 129654361 129655159 - TEC TEC MGP_C57BL6NJ_T0016481.1 MGP_C57BL6NJ_G0014526.1 mouse_genomes_project 8 134623291 134623456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090018.1 MGP_C57BL6NJ_G0034293.1 mouse_genomes_project 8 78595365 78610735 + MGP_C57BL6NJ_P0090018 Rasd2 protein_coding protein_coding MGP_C57BL6NJ_T0090019.1 MGP_C57BL6NJ_G0034293.1 mouse_genomes_project 8 78595923 78609031 + MGP_C57BL6NJ_P0090019 Rasd2 protein_coding protein_coding MGP_C57BL6NJ_T0091527.1 MGP_C57BL6NJ_G0034779.1 mouse_genomes_project 8 133485060 133561929 - MGP_C57BL6NJ_P0091527 Sipa1l2 protein_coding protein_coding MGP_C57BL6NJ_T0089465.1 MGP_C57BL6NJ_G0034126.1 mouse_genomes_project 8 63097130 63114622 + MGP_C57BL6NJ_P0089465 Hpf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089466.1 MGP_C57BL6NJ_G0034126.1 mouse_genomes_project 8 63097157 63114620 + MGP_C57BL6NJ_P0089466 Hpf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089467.1 MGP_C57BL6NJ_G0034126.1 mouse_genomes_project 8 63097163 63114627 + MGP_C57BL6NJ_P0089467 Hpf1 protein_coding protein_coding MGP_C57BL6NJ_T0089468.1 MGP_C57BL6NJ_G0034126.1 mouse_genomes_project 8 63097163 63113032 + MGP_C57BL6NJ_P0089468 Hpf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089469.1 MGP_C57BL6NJ_G0034126.1 mouse_genomes_project 8 63097201 63103761 + Hpf1 protein_coding retained_intron MGP_C57BL6NJ_T0090259.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89038862 89042891 - MGP_C57BL6NJ_P0090259 Rad23a protein_coding protein_coding MGP_C57BL6NJ_T0090260.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89039495 89045485 - MGP_C57BL6NJ_P0090260 Rad23a protein_coding protein_coding MGP_C57BL6NJ_T0090261.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89039754 89045509 - MGP_C57BL6NJ_P0090261 Rad23a protein_coding protein_coding MGP_C57BL6NJ_T0090262.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89040463 89045509 - MGP_C57BL6NJ_P0090262 Rad23a protein_coding protein_coding MGP_C57BL6NJ_T0090263.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89042565 89043510 - Rad23a protein_coding retained_intron MGP_C57BL6NJ_T0090264.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89042578 89043524 - Rad23a protein_coding retained_intron MGP_C57BL6NJ_T0090265.1 MGP_C57BL6NJ_G0034368.1 mouse_genomes_project 8 89043142 89045480 - Rad23a protein_coding retained_intron MGP_C57BL6NJ_T0009302.1 MGP_C57BL6NJ_G0007480.1 mouse_genomes_project 8 73757164 73758173 + 2010320M18Rik lincRNA lincRNA MGP_C57BL6NJ_T0011230.1 MGP_C57BL6NJ_G0009315.1 mouse_genomes_project 8 73009367 73009430 - Mir7066 miRNA miRNA MGP_C57BL6NJ_T0101931.1 MGP_C57BL6NJ_G0039977.1 mouse_genomes_project 8 48347728 48347862 + Gm22857 snoRNA snoRNA MGP_C57BL6NJ_T0089624.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72683316 72698424 + MGP_C57BL6NJ_P0089624 Gmip protein_coding protein_coding MGP_C57BL6NJ_T0089625.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72683327 72695524 + MGP_C57BL6NJ_P0089625 Gmip protein_coding protein_coding MGP_C57BL6NJ_T0089626.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72687128 72690406 + Gmip protein_coding processed_transcript MGP_C57BL6NJ_T0089627.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72687284 72688261 + Gmip protein_coding processed_transcript MGP_C57BL6NJ_T0089628.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72689816 72690654 + Gmip protein_coding retained_intron MGP_C57BL6NJ_T0089629.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72690437 72692788 + Gmip protein_coding processed_transcript MGP_C57BL6NJ_T0089630.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72693263 72694143 + Gmip protein_coding retained_intron MGP_C57BL6NJ_T0089631.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72694379 72695529 + MGP_C57BL6NJ_P0089631 Gmip protein_coding protein_coding MGP_C57BL6NJ_T0089632.1 MGP_C57BL6NJ_G0034173.1 mouse_genomes_project 8 72694615 72697887 + Gmip protein_coding processed_transcript MGP_C57BL6NJ_T0090662.1 MGP_C57BL6NJ_G0034491.1 mouse_genomes_project 8 100955576 100989268 - MGP_C57BL6NJ_P0090662 Got2 protein_coding protein_coding MGP_C57BL6NJ_T0090663.1 MGP_C57BL6NJ_G0034491.1 mouse_genomes_project 8 100961111 100969488 - Got2 protein_coding processed_transcript MGP_C57BL6NJ_T0088629.1 MGP_C57BL6NJ_G0033842.1 mouse_genomes_project 8 7728030 8122593 + MGP_C57BL6NJ_P0088629 Myo16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088630.1 MGP_C57BL6NJ_G0033842.1 mouse_genomes_project 8 7754771 8122584 + MGP_C57BL6NJ_P0088630 Myo16 protein_coding protein_coding MGP_C57BL6NJ_T0088583.1 MGP_C57BL6NJ_G0033823.1 mouse_genomes_project 8 1277734 1280852 + MGP_C57BL6NJ_P0088583 Snapc2 protein_coding protein_coding MGP_C57BL6NJ_T0091583.1 MGP_C57BL6NJ_G0034794.1 mouse_genomes_project 8 136996076 137056603 - MGP_C57BL6NJ_P0091583 Gm3952 protein_coding protein_coding MGP_C57BL6NJ_T0090435.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92778753 92780633 - Brd7 protein_coding processed_transcript MGP_C57BL6NJ_T0090436.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92778772 92812572 - MGP_C57BL6NJ_P0090436 Brd7 protein_coding protein_coding MGP_C57BL6NJ_T0090437.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92780500 92781635 - Brd7 protein_coding processed_transcript MGP_C57BL6NJ_T0090438.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92780519 92783201 - Brd7 protein_coding retained_intron MGP_C57BL6NJ_T0090439.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92780599 92790548 - Brd7 protein_coding processed_transcript MGP_C57BL6NJ_T0090440.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92781262 92790470 - Brd7 protein_coding processed_transcript MGP_C57BL6NJ_T0090441.1 MGP_C57BL6NJ_G0034415.1 mouse_genomes_project 8 92806438 92812392 - Brd7 protein_coding processed_transcript MGP_C57BL6NJ_T0089797.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73701815 73725829 + MGP_C57BL6NJ_P0089797 Pde4c protein_coding protein_coding MGP_C57BL6NJ_T0089798.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73702159 73730964 + MGP_C57BL6NJ_P0089798 Pde4c protein_coding protein_coding MGP_C57BL6NJ_T0089799.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73702160 73730950 + MGP_C57BL6NJ_P0089799 Pde4c protein_coding protein_coding MGP_C57BL6NJ_T0089800.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73708203 73725676 + Pde4c protein_coding processed_transcript MGP_C57BL6NJ_T0089801.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73722861 73730252 + Pde4c protein_coding retained_intron MGP_C57BL6NJ_T0089802.1 MGP_C57BL6NJ_G0034218.1 mouse_genomes_project 8 73727669 73730592 + Pde4c protein_coding retained_intron MGP_C57BL6NJ_T0089605.1 MGP_C57BL6NJ_G0034162.1 mouse_genomes_project 8 71969291 71971929 + MGP_C57BL6NJ_P0089605 Zfp930 protein_coding protein_coding MGP_C57BL6NJ_T0091387.1 MGP_C57BL6NJ_G0034735.1 mouse_genomes_project 8 130950621 130968230 + Cpne7 protein_coding retained_intron MGP_C57BL6NJ_T0091388.1 MGP_C57BL6NJ_G0034735.1 mouse_genomes_project 8 130950625 130968232 + MGP_C57BL6NJ_P0091388 Cpne7 protein_coding protein_coding MGP_C57BL6NJ_T0091389.1 MGP_C57BL6NJ_G0034735.1 mouse_genomes_project 8 130950694 130968232 + Cpne7 protein_coding retained_intron MGP_C57BL6NJ_T0091390.1 MGP_C57BL6NJ_G0034735.1 mouse_genomes_project 8 130959566 130960423 + Cpne7 protein_coding processed_transcript MGP_C57BL6NJ_T0091391.1 MGP_C57BL6NJ_G0034735.1 mouse_genomes_project 8 130961672 130964942 + Cpne7 protein_coding retained_intron MGP_C57BL6NJ_T0005485.1 MGP_C57BL6NJ_G0004647.1 mouse_genomes_project 8 705674 737535 + Gm16553 antisense antisense MGP_C57BL6NJ_T0100641.1 MGP_C57BL6NJ_G0038687.1 mouse_genomes_project 8 43204592 43204698 + Gm26181 snRNA snRNA MGP_C57BL6NJ_T0103556.1 MGP_C57BL6NJ_G0041348.1 mouse_genomes_project 8 17505995 17507835 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009328.1 MGP_C57BL6NJ_G0007503.1 mouse_genomes_project 8 91829189 91832514 + Gm19872 lincRNA lincRNA MGP_C57BL6NJ_T0091085.1 MGP_C57BL6NJ_G0034650.1 mouse_genomes_project 8 120584661 120596771 + MGP_C57BL6NJ_P0091085 Syce1l protein_coding protein_coding MGP_C57BL6NJ_T0091086.1 MGP_C57BL6NJ_G0034650.1 mouse_genomes_project 8 120584661 120596771 + MGP_C57BL6NJ_P0091086 Syce1l protein_coding protein_coding MGP_C57BL6NJ_T0103564.1 MGP_C57BL6NJ_G0041356.1 mouse_genomes_project 8 105106451 105107840 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100634.1 MGP_C57BL6NJ_G0038680.1 mouse_genomes_project 8 10996220 10996323 - Gm25014 snRNA snRNA MGP_C57BL6NJ_T0018951.1 MGP_C57BL6NJ_G0016116.1 mouse_genomes_project 8 100892815 100907198 + 4930513N10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018952.1 MGP_C57BL6NJ_G0016116.1 mouse_genomes_project 8 100892958 100896186 + 4930513N10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018953.1 MGP_C57BL6NJ_G0016116.1 mouse_genomes_project 8 100895018 100907167 + 4930513N10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0088956.1 MGP_C57BL6NJ_G0033962.1 mouse_genomes_project 8 23424912 23447515 - Ido2 protein_coding processed_transcript MGP_C57BL6NJ_T0088957.1 MGP_C57BL6NJ_G0033962.1 mouse_genomes_project 8 23425472 23475102 - MGP_C57BL6NJ_P0088957 Ido2 protein_coding protein_coding MGP_C57BL6NJ_T0088958.1 MGP_C57BL6NJ_G0033962.1 mouse_genomes_project 8 23426474 23433815 - Ido2 protein_coding retained_intron MGP_C57BL6NJ_T0088959.1 MGP_C57BL6NJ_G0033962.1 mouse_genomes_project 8 23443687 23447472 - Ido2 protein_coding processed_transcript MGP_C57BL6NJ_T0088873.1 MGP_C57BL6NJ_G0033931.1 mouse_genomes_project 8 20630682 20632759 + MGP_C57BL6NJ_P0088873 Defb13 protein_coding protein_coding MGP_C57BL6NJ_T0091190.1 MGP_C57BL6NJ_G0034690.1 mouse_genomes_project 8 127474892 127537775 + MGP_C57BL6NJ_P0091190 Crispld2 protein_coding protein_coding MGP_C57BL6NJ_T0091191.1 MGP_C57BL6NJ_G0034690.1 mouse_genomes_project 8 127474962 127536564 + MGP_C57BL6NJ_P0091191 Crispld2 protein_coding protein_coding MGP_C57BL6NJ_T0091192.1 MGP_C57BL6NJ_G0034690.1 mouse_genomes_project 8 127486911 127536564 + MGP_C57BL6NJ_P0091192 Crispld2 protein_coding protein_coding MGP_C57BL6NJ_T0091193.1 MGP_C57BL6NJ_G0034690.1 mouse_genomes_project 8 127498223 127500744 + Crispld2 protein_coding processed_transcript MGP_C57BL6NJ_T0091194.1 MGP_C57BL6NJ_G0034690.1 mouse_genomes_project 8 127515845 127535459 + Crispld2 protein_coding retained_intron MGP_C57BL6NJ_T0089147.1 MGP_C57BL6NJ_G0034023.1 mouse_genomes_project 8 33832611 33842747 + MGP_C57BL6NJ_P0089147 Mboat4 protein_coding protein_coding MGP_C57BL6NJ_T0090757.1 MGP_C57BL6NJ_G0034529.1 mouse_genomes_project 8 111494927 111503973 - MGP_C57BL6NJ_P0090757 4931428F04Rik protein_coding protein_coding MGP_C57BL6NJ_T0090758.1 MGP_C57BL6NJ_G0034529.1 mouse_genomes_project 8 111494927 111503973 - MGP_C57BL6NJ_P0090758 4931428F04Rik protein_coding protein_coding MGP_C57BL6NJ_T0090686.1 MGP_C57BL6NJ_G0034503.1 mouse_genomes_project 8 110384107 110442949 - MGP_C57BL6NJ_P0090686 Cmtm4 protein_coding protein_coding MGP_C57BL6NJ_T0091153.1 MGP_C57BL6NJ_G0034676.1 mouse_genomes_project 8 126875644 126901567 + MGP_C57BL6NJ_P0091153 Necab2 protein_coding protein_coding MGP_C57BL6NJ_T0091154.1 MGP_C57BL6NJ_G0034676.1 mouse_genomes_project 8 126875686 126901338 + Necab2 protein_coding processed_transcript MGP_C57BL6NJ_T0091155.1 MGP_C57BL6NJ_G0034676.1 mouse_genomes_project 8 126881357 126899872 + MGP_C57BL6NJ_P0091155 Necab2 protein_coding protein_coding MGP_C57BL6NJ_T0009268.1 MGP_C57BL6NJ_G0007451.1 mouse_genomes_project 8 21107819 21108695 + 1810012K16Rik lincRNA lincRNA MGP_C57BL6NJ_T0091129.1 MGP_C57BL6NJ_G0034666.1 mouse_genomes_project 8 124383394 124440253 + MGP_C57BL6NJ_P0091129 Gan protein_coding protein_coding MGP_C57BL6NJ_T0098906.1 MGP_C57BL6NJ_G0036970.1 mouse_genomes_project 8 125104008 125105181 + pseudogene pseudogene MGP_C57BL6NJ_T0099161.1 MGP_C57BL6NJ_G0037225.1 mouse_genomes_project 8 13261461 13261554 + Gm24222 rRNA rRNA MGP_C57BL6NJ_T0089922.1 MGP_C57BL6NJ_G0034259.1 mouse_genomes_project 8 74849069 74860815 - MGP_C57BL6NJ_P0089922 B3gnt3 protein_coding protein_coding MGP_C57BL6NJ_T0088889.1 MGP_C57BL6NJ_G0033938.1 mouse_genomes_project 8 20857930 20875596 - MGP_C57BL6NJ_P0088889 Ckap2 protein_coding protein_coding MGP_C57BL6NJ_T0089848.1 MGP_C57BL6NJ_G0034237.1 mouse_genomes_project 8 74503621 74506706 + MGP_C57BL6NJ_P0089848 Ocel1 protein_coding protein_coding MGP_C57BL6NJ_T0089849.1 MGP_C57BL6NJ_G0034237.1 mouse_genomes_project 8 74503662 74506013 + MGP_C57BL6NJ_P0089849 Ocel1 protein_coding protein_coding MGP_C57BL6NJ_T0089850.1 MGP_C57BL6NJ_G0034237.1 mouse_genomes_project 8 74503669 74511685 + MGP_C57BL6NJ_P0089850 Ocel1 protein_coding protein_coding MGP_C57BL6NJ_T0089851.1 MGP_C57BL6NJ_G0034237.1 mouse_genomes_project 8 74504796 74505279 + Ocel1 protein_coding retained_intron MGP_C57BL6NJ_T0005558.1 MGP_C57BL6NJ_G0004706.1 mouse_genomes_project 8 127521188 127530275 - Gm15684 antisense antisense MGP_C57BL6NJ_T0090281.1 MGP_C57BL6NJ_G0034373.1 mouse_genomes_project 8 89094662 89101926 - MGP_C57BL6NJ_P0090281 Gcdh protein_coding protein_coding MGP_C57BL6NJ_T0090282.1 MGP_C57BL6NJ_G0034373.1 mouse_genomes_project 8 89098982 89101530 - Gcdh protein_coding retained_intron MGP_C57BL6NJ_T0090283.1 MGP_C57BL6NJ_G0034373.1 mouse_genomes_project 8 89099181 89100911 - Gcdh protein_coding retained_intron MGP_C57BL6NJ_T0090284.1 MGP_C57BL6NJ_G0034373.1 mouse_genomes_project 8 89100895 89101720 - Gcdh protein_coding retained_intron MGP_C57BL6NJ_T0090285.1 MGP_C57BL6NJ_G0034373.1 mouse_genomes_project 8 89101338 89102166 - MGP_C57BL6NJ_P0090285 Gcdh protein_coding protein_coding MGP_C57BL6NJ_T0005526.1 MGP_C57BL6NJ_G0004679.1 mouse_genomes_project 8 70623609 70645844 + Gm15991 antisense antisense MGP_C57BL6NJ_T0091514.1 MGP_C57BL6NJ_G0034774.1 mouse_genomes_project 8 132892611 132900021 - MGP_C57BL6NJ_P0091514 Exoc8 protein_coding protein_coding MGP_C57BL6NJ_T0090613.1 MGP_C57BL6NJ_G0034475.1 mouse_genomes_project 8 100049137 100067809 + MGP_C57BL6NJ_P0090613 Katnb1 protein_coding protein_coding MGP_C57BL6NJ_T0009314.1 MGP_C57BL6NJ_G0007490.1 mouse_genomes_project 8 87970919 87983343 - Gm26721 lincRNA lincRNA MGP_C57BL6NJ_T0089250.1 MGP_C57BL6NJ_G0034062.1 mouse_genomes_project 8 44056327 44117684 - MGP_C57BL6NJ_P0089250 protein_coding protein_coding MGP_C57BL6NJ_T0091353.1 MGP_C57BL6NJ_G0034724.1 mouse_genomes_project 8 130332485 130338834 + MGP_C57BL6NJ_P0091353 Cdt1 protein_coding protein_coding MGP_C57BL6NJ_T0089461.1 MGP_C57BL6NJ_G0034125.1 mouse_genomes_project 8 62835310 62878641 + MGP_C57BL6NJ_P0089461 Mfap3l protein_coding protein_coding MGP_C57BL6NJ_T0089462.1 MGP_C57BL6NJ_G0034125.1 mouse_genomes_project 8 62835343 62880437 + MGP_C57BL6NJ_P0089462 Mfap3l protein_coding protein_coding MGP_C57BL6NJ_T0089463.1 MGP_C57BL6NJ_G0034125.1 mouse_genomes_project 8 62858848 62876174 + MGP_C57BL6NJ_P0089463 Mfap3l protein_coding protein_coding MGP_C57BL6NJ_T0089464.1 MGP_C57BL6NJ_G0034125.1 mouse_genomes_project 8 62859284 62876070 + MGP_C57BL6NJ_P0089464 Mfap3l protein_coding protein_coding MGP_C57BL6NJ_T0090194.1 MGP_C57BL6NJ_G0034355.1 mouse_genomes_project 8 88354371 88380471 - MGP_C57BL6NJ_P0090194 Zswim4 protein_coding protein_coding MGP_C57BL6NJ_T0088858.1 MGP_C57BL6NJ_G0033917.1 mouse_genomes_project 8 19269341 19274396 + MGP_C57BL6NJ_P0088858 Defb33 protein_coding protein_coding MGP_C57BL6NJ_T0089181.1 MGP_C57BL6NJ_G0034041.1 mouse_genomes_project 8 39804895 39871039 - MGP_C57BL6NJ_P0089181 Msr1 protein_coding protein_coding MGP_C57BL6NJ_T0089182.1 MGP_C57BL6NJ_G0034041.1 mouse_genomes_project 8 39828012 39871039 - MGP_C57BL6NJ_P0089182 Msr1 protein_coding protein_coding MGP_C57BL6NJ_T0089074.1 MGP_C57BL6NJ_G0033996.1 mouse_genomes_project 8 26366755 26371841 - MGP_C57BL6NJ_P0089074 Got1l1 protein_coding protein_coding MGP_C57BL6NJ_T0009273.1 MGP_C57BL6NJ_G0007456.1 mouse_genomes_project 8 26866476 26883077 + Gm1698 lincRNA lincRNA MGP_C57BL6NJ_T0089252.1 MGP_C57BL6NJ_G0034064.1 mouse_genomes_project 8 44239154 44292456 - MGP_C57BL6NJ_P0089252 protein_coding protein_coding MGP_C57BL6NJ_T0089263.1 MGP_C57BL6NJ_G0034068.1 mouse_genomes_project 8 45990173 46015566 - MGP_C57BL6NJ_P0089263 Klkb1 protein_coding protein_coding MGP_C57BL6NJ_T0089860.1 MGP_C57BL6NJ_G0034239.1 mouse_genomes_project 8 74516597 74528115 - MGP_C57BL6NJ_P0089860 Ushbp1 protein_coding protein_coding MGP_C57BL6NJ_T0090830.1 MGP_C57BL6NJ_G0034561.1 mouse_genomes_project 8 112228736 112230605 - MGP_C57BL6NJ_P0090830 Ctrl protein_coding protein_coding MGP_C57BL6NJ_T0016466.1 MGP_C57BL6NJ_G0014511.1 mouse_genomes_project 8 93670559 93670878 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002473.1 MGP_C57BL6NJ_G0002362.1 mouse_genomes_project 8 79003557 79003964 - TEC TEC MGP_C57BL6NJ_T0090574.1 MGP_C57BL6NJ_G0034462.1 mouse_genomes_project 8 99607852 99630377 - MGP_C57BL6NJ_P0090574 Pllp protein_coding protein_coding MGP_C57BL6NJ_T0016472.1 MGP_C57BL6NJ_G0014517.1 mouse_genomes_project 8 104502166 104504870 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090063.1 MGP_C57BL6NJ_G0034307.1 mouse_genomes_project 8 83001605 83017970 - MGP_C57BL6NJ_P0090063 Mmaa protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011245.1 MGP_C57BL6NJ_G0009330.1 mouse_genomes_project 8 88351947 88352022 + Mir23a miRNA miRNA MGP_C57BL6NJ_T0018924.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49932177 49961940 + Gm19744 processed_transcript lincRNA MGP_C57BL6NJ_T0018925.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49932234 49935999 + Gm19744 processed_transcript lincRNA MGP_C57BL6NJ_T0018926.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49932309 49933622 + Gm19744 processed_transcript antisense MGP_C57BL6NJ_T0018927.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49932553 49933027 + Gm19744 processed_transcript retained_intron MGP_C57BL6NJ_T0018928.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49932615 49933121 + Gm19744 processed_transcript antisense MGP_C57BL6NJ_T0018929.1 MGP_C57BL6NJ_G0016108.1 mouse_genomes_project 8 49946666 49962825 + Gm19744 processed_transcript lincRNA MGP_C57BL6NJ_T0101912.1 MGP_C57BL6NJ_G0039958.1 mouse_genomes_project 8 12040919 12041050 - Gm26184 snoRNA snoRNA MGP_C57BL6NJ_T0089676.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093087 73103150 + Tmem161a protein_coding processed_transcript MGP_C57BL6NJ_T0089677.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093136 73105887 + MGP_C57BL6NJ_P0089677 Tmem161a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089678.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093144 73105095 + MGP_C57BL6NJ_P0089678 Tmem161a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089679.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093147 73097622 + Tmem161a protein_coding retained_intron MGP_C57BL6NJ_T0089680.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093147 73097895 + Tmem161a protein_coding processed_transcript MGP_C57BL6NJ_T0089681.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093150 73102958 + MGP_C57BL6NJ_P0089681 Tmem161a protein_coding protein_coding MGP_C57BL6NJ_T0089682.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73093169 73104359 + MGP_C57BL6NJ_P0089682 Tmem161a protein_coding protein_coding MGP_C57BL6NJ_T0089683.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73095036 73105087 + MGP_C57BL6NJ_P0089683 Tmem161a protein_coding protein_coding MGP_C57BL6NJ_T0089684.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73097311 73098028 + Tmem161a protein_coding retained_intron MGP_C57BL6NJ_T0089685.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73097706 73101110 + Tmem161a protein_coding processed_transcript MGP_C57BL6NJ_T0089686.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73097956 73103432 + MGP_C57BL6NJ_P0089686 Tmem161a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089687.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73100952 73103533 + Tmem161a protein_coding retained_intron MGP_C57BL6NJ_T0089688.1 MGP_C57BL6NJ_G0034190.1 mouse_genomes_project 8 73102758 73104252 + Tmem161a protein_coding retained_intron MGP_C57BL6NJ_T0103554.1 MGP_C57BL6NJ_G0041346.1 mouse_genomes_project 8 17326266 17330423 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0089386.1 MGP_C57BL6NJ_G0034099.1 mouse_genomes_project 8 48827005 49003036 - MGP_C57BL6NJ_P0089386 Wwc2 protein_coding protein_coding MGP_C57BL6NJ_T0090820.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112174395 112186740 + MGP_C57BL6NJ_P0090820 Edc4 protein_coding protein_coding MGP_C57BL6NJ_T0090821.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112174465 112186723 + MGP_C57BL6NJ_P0090821 Edc4 protein_coding protein_coding MGP_C57BL6NJ_T0090822.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112174591 112188423 + MGP_C57BL6NJ_P0090822 Edc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090823.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112180483 112181660 + Edc4 protein_coding retained_intron MGP_C57BL6NJ_T0090824.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112180892 112183047 + MGP_C57BL6NJ_P0090824 Edc4 protein_coding protein_coding MGP_C57BL6NJ_T0090825.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112180906 112182228 + MGP_C57BL6NJ_P0090825 Edc4 protein_coding protein_coding MGP_C57BL6NJ_T0090826.1 MGP_C57BL6NJ_G0034558.1 mouse_genomes_project 8 112183782 112184843 + Edc4 protein_coding retained_intron MGP_C57BL6NJ_T0089431.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58354898 58374237 - MGP_C57BL6NJ_P0089431 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089432.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58354898 58368842 - MGP_C57BL6NJ_P0089432 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089433.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58366282 58374223 - MGP_C57BL6NJ_P0089433 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089434.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58367570 58374179 - MGP_C57BL6NJ_P0089434 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089435.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58367637 58374252 - MGP_C57BL6NJ_P0089435 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089436.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58368828 58374427 - MGP_C57BL6NJ_P0089436 Cep44 protein_coding protein_coding MGP_C57BL6NJ_T0089437.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58372361 58373638 - Cep44 protein_coding processed_transcript MGP_C57BL6NJ_T0089438.1 MGP_C57BL6NJ_G0034114.1 mouse_genomes_project 8 58372709 58374183 - Cep44 protein_coding processed_transcript MGP_C57BL6NJ_T0009389.1 MGP_C57BL6NJ_G0007542.1 mouse_genomes_project 8 129546585 129557013 + Gm26812 lincRNA lincRNA MGP_C57BL6NJ_T0009390.1 MGP_C57BL6NJ_G0007542.1 mouse_genomes_project 8 129548274 129556717 + Gm26812 lincRNA lincRNA MGP_C57BL6NJ_T0088570.1 MGP_C57BL6NJ_G0033820.1 mouse_genomes_project 8 1251751 1262103 + MGP_C57BL6NJ_P0088570 Lrrc8e protein_coding protein_coding MGP_C57BL6NJ_T0090051.1 MGP_C57BL6NJ_G0034304.1 mouse_genomes_project 8 82489137 82513998 - MGP_C57BL6NJ_P0090051 Lsm6 protein_coding protein_coding MGP_C57BL6NJ_T0090052.1 MGP_C57BL6NJ_G0034304.1 mouse_genomes_project 8 82490723 82513998 - MGP_C57BL6NJ_P0090052 Lsm6 protein_coding protein_coding MGP_C57BL6NJ_T0090053.1 MGP_C57BL6NJ_G0034304.1 mouse_genomes_project 8 82492309 82494483 - Lsm6 protein_coding retained_intron MGP_C57BL6NJ_T0090054.1 MGP_C57BL6NJ_G0034304.1 mouse_genomes_project 8 82492330 82497487 - Lsm6 protein_coding retained_intron MGP_C57BL6NJ_T0011203.1 MGP_C57BL6NJ_G0009288.1 mouse_genomes_project 8 6036661 6036731 - Mir7654 miRNA miRNA MGP_C57BL6NJ_T0090050.1 MGP_C57BL6NJ_G0034303.1 mouse_genomes_project 8 82151873 82405736 + MGP_C57BL6NJ_P0090050 Slc10a7 protein_coding protein_coding MGP_C57BL6NJ_T0089882.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74626809 74632107 + MGP_C57BL6NJ_P0089882 Gtpbp3 protein_coding protein_coding MGP_C57BL6NJ_T0089883.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74627427 74632107 + MGP_C57BL6NJ_P0089883 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089884.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74627434 74638443 + MGP_C57BL6NJ_P0089884 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089885.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74627440 74628285 + Gtpbp3 protein_coding retained_intron MGP_C57BL6NJ_T0089886.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74627449 74632107 + Gtpbp3 protein_coding retained_intron MGP_C57BL6NJ_T0089887.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74627457 74632107 + MGP_C57BL6NJ_P0089887 Gtpbp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089888.1 MGP_C57BL6NJ_G0034246.1 mouse_genomes_project 8 74628165 74630118 + Gtpbp3 protein_coding retained_intron MGP_C57BL6NJ_T0090313.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198293 89203541 + MGP_C57BL6NJ_P0090313 Prdx2 protein_coding protein_coding MGP_C57BL6NJ_T0090314.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198317 89203541 + MGP_C57BL6NJ_P0090314 Prdx2 protein_coding protein_coding MGP_C57BL6NJ_T0090315.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198400 89200810 + Prdx2 protein_coding retained_intron MGP_C57BL6NJ_T0090316.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198400 89199832 + Prdx2 protein_coding retained_intron MGP_C57BL6NJ_T0090317.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198473 89203541 + MGP_C57BL6NJ_P0090317 Prdx2 protein_coding protein_coding MGP_C57BL6NJ_T0090318.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198563 89200328 + MGP_C57BL6NJ_P0090318 Prdx2 protein_coding protein_coding MGP_C57BL6NJ_T0090319.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89198945 89203367 + MGP_C57BL6NJ_P0090319 Prdx2 protein_coding protein_coding MGP_C57BL6NJ_T0090320.1 MGP_C57BL6NJ_G0034379.1 mouse_genomes_project 8 89200162 89203018 + Prdx2 protein_coding retained_intron MGP_C57BL6NJ_T0016412.1 MGP_C57BL6NJ_G0014457.1 mouse_genomes_project 8 17625693 17626284 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009385.1 MGP_C57BL6NJ_G0007539.1 mouse_genomes_project 8 129073860 129074270 + Gm26784 lincRNA lincRNA MGP_C57BL6NJ_T0089442.1 MGP_C57BL6NJ_G0034117.1 mouse_genomes_project 8 59384785 59409886 + MGP_C57BL6NJ_P0089442 Scrg1 protein_coding protein_coding MGP_C57BL6NJ_T0089520.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67151289 67168375 - MGP_C57BL6NJ_P0089520 Msmo1 protein_coding protein_coding MGP_C57BL6NJ_T0089521.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67151359 67168164 - Msmo1 protein_coding processed_transcript MGP_C57BL6NJ_T0089522.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67151377 67168161 - Msmo1 protein_coding retained_intron MGP_C57BL6NJ_T0089523.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67151774 67155082 - Msmo1 protein_coding processed_transcript MGP_C57BL6NJ_T0089524.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67158347 67165674 - MGP_C57BL6NJ_P0089524 Msmo1 protein_coding protein_coding MGP_C57BL6NJ_T0089525.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67159663 67168131 - Msmo1 protein_coding retained_intron MGP_C57BL6NJ_T0089526.1 MGP_C57BL6NJ_G0034138.1 mouse_genomes_project 8 67162332 67168131 - MGP_C57BL6NJ_P0089526 Msmo1 protein_coding protein_coding MGP_C57BL6NJ_T0090196.1 MGP_C57BL6NJ_G0034357.1 mouse_genomes_project 8 88394024 88401443 - MGP_C57BL6NJ_P0090196 Mri1 protein_coding protein_coding MGP_C57BL6NJ_T0090197.1 MGP_C57BL6NJ_G0034357.1 mouse_genomes_project 8 88395140 88400532 - MGP_C57BL6NJ_P0090197 Mri1 protein_coding protein_coding MGP_C57BL6NJ_T0090198.1 MGP_C57BL6NJ_G0034357.1 mouse_genomes_project 8 88398049 88401366 - MGP_C57BL6NJ_P0090198 Mri1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090199.1 MGP_C57BL6NJ_G0034357.1 mouse_genomes_project 8 88398363 88401445 - Mri1 protein_coding processed_transcript MGP_C57BL6NJ_T0090200.1 MGP_C57BL6NJ_G0034357.1 mouse_genomes_project 8 88399910 88401445 - Mri1 protein_coding retained_intron MGP_C57BL6NJ_T0091130.1 MGP_C57BL6NJ_G0034667.1 mouse_genomes_project 8 124490018 124709445 + MGP_C57BL6NJ_P0091130 Cmip protein_coding protein_coding MGP_C57BL6NJ_T0091131.1 MGP_C57BL6NJ_G0034667.1 mouse_genomes_project 8 124594079 124709445 + MGP_C57BL6NJ_P0091131 Cmip protein_coding protein_coding MGP_C57BL6NJ_T0101958.1 MGP_C57BL6NJ_G0040004.1 mouse_genomes_project 8 100830841 100830974 - Gm26265 snoRNA snoRNA MGP_C57BL6NJ_T0090851.1 MGP_C57BL6NJ_G0034569.1 mouse_genomes_project 8 112364141 112453585 + MGP_C57BL6NJ_P0090851 Nfatc3 protein_coding protein_coding MGP_C57BL6NJ_T0090707.1 MGP_C57BL6NJ_G0034510.1 mouse_genomes_project 8 110705129 110708385 - MGP_C57BL6NJ_P0090707 Rrad protein_coding protein_coding MGP_C57BL6NJ_T0011992.1 MGP_C57BL6NJ_G0010077.1 mouse_genomes_project 8 117166194 117166485 + Gm22701 misc_RNA misc_RNA MGP_C57BL6NJ_T0090787.1 MGP_C57BL6NJ_G0034540.1 mouse_genomes_project 8 111699721 111703755 - MGP_C57BL6NJ_P0090787 Tppp3 protein_coding protein_coding MGP_C57BL6NJ_T0090788.1 MGP_C57BL6NJ_G0034540.1 mouse_genomes_project 8 111699897 111701639 - MGP_C57BL6NJ_P0090788 Tppp3 protein_coding protein_coding MGP_C57BL6NJ_T0090789.1 MGP_C57BL6NJ_G0034540.1 mouse_genomes_project 8 111699911 111700891 - MGP_C57BL6NJ_P0090789 Tppp3 protein_coding protein_coding MGP_C57BL6NJ_T0091041.1 MGP_C57BL6NJ_G0034634.1 mouse_genomes_project 8 118225670 118302589 - MGP_C57BL6NJ_P0091041 Wdr59 protein_coding protein_coding MGP_C57BL6NJ_T0091042.1 MGP_C57BL6NJ_G0034634.1 mouse_genomes_project 8 118225670 118302589 - MGP_C57BL6NJ_P0091042 Wdr59 protein_coding protein_coding MGP_C57BL6NJ_T0089215.1 MGP_C57BL6NJ_G0034050.1 mouse_genomes_project 8 41120746 41137802 + MGP_C57BL6NJ_P0089215 Adam20 protein_coding protein_coding MGP_C57BL6NJ_T0090729.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364104 111420636 + MGP_C57BL6NJ_P0090729 Cbfb protein_coding protein_coding MGP_C57BL6NJ_T0090730.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364174 111420628 + MGP_C57BL6NJ_P0090730 Cbfb protein_coding protein_coding MGP_C57BL6NJ_T0090731.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364174 111420628 + MGP_C57BL6NJ_P0090731 Cbfb protein_coding protein_coding MGP_C57BL6NJ_T0090732.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364375 111420628 + MGP_C57BL6NJ_P0090732 Cbfb protein_coding protein_coding MGP_C57BL6NJ_T0090733.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364539 111376160 + Cbfb protein_coding retained_intron MGP_C57BL6NJ_T0090734.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364922 111395031 + Cbfb protein_coding processed_transcript MGP_C57BL6NJ_T0090735.1 MGP_C57BL6NJ_G0034522.1 mouse_genomes_project 8 111364994 111395011 + Cbfb protein_coding processed_transcript MGP_C57BL6NJ_T0091178.1 MGP_C57BL6NJ_G0034688.1 mouse_genomes_project 8 127338121 127356290 + MGP_C57BL6NJ_P0091178 Klhl36 protein_coding protein_coding MGP_C57BL6NJ_T0089264.1 MGP_C57BL6NJ_G0034069.1 mouse_genomes_project 8 45990402 46031972 - MGP_C57BL6NJ_P0089264 Cyp4v3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089265.1 MGP_C57BL6NJ_G0034069.1 mouse_genomes_project 8 46028451 46065795 - MGP_C57BL6NJ_P0089265 Cyp4v3 protein_coding protein_coding MGP_C57BL6NJ_T0009329.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841514 91891762 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009330.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841514 91891763 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009331.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841514 91889534 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009332.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841546 91891761 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009333.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841818 91891217 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009334.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841836 91891763 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0009335.1 MGP_C57BL6NJ_G0007504.1 mouse_genomes_project 8 91841859 91869867 + Gm2694 lincRNA lincRNA MGP_C57BL6NJ_T0091170.1 MGP_C57BL6NJ_G0034682.1 mouse_genomes_project 8 127061958 127066139 + MGP_C57BL6NJ_P0091170 Adad2 protein_coding protein_coding MGP_C57BL6NJ_T0088830.1 MGP_C57BL6NJ_G0033897.1 mouse_genomes_project 8 16693100 16746092 - MGP_C57BL6NJ_P0088830 Angpt2 protein_coding protein_coding MGP_C57BL6NJ_T0088831.1 MGP_C57BL6NJ_G0033897.1 mouse_genomes_project 8 16694924 16702361 - Angpt2 protein_coding processed_transcript MGP_C57BL6NJ_T0089301.1 MGP_C57BL6NJ_G0034074.1 mouse_genomes_project 8 46710065 46719580 + MGP_C57BL6NJ_P0089301 Ccdc110 protein_coding protein_coding MGP_C57BL6NJ_T0089302.1 MGP_C57BL6NJ_G0034074.1 mouse_genomes_project 8 46710151 46716935 + MGP_C57BL6NJ_P0089302 Ccdc110 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016467.1 MGP_C57BL6NJ_G0014512.1 mouse_genomes_project 8 93711868 93712483 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089443.1 MGP_C57BL6NJ_G0034118.1 mouse_genomes_project 8 59414978 59420132 - MGP_C57BL6NJ_P0089443 Sap30 protein_coding protein_coding MGP_C57BL6NJ_T0099171.1 MGP_C57BL6NJ_G0037235.1 mouse_genomes_project 8 135799276 135799394 + Gm22968 rRNA rRNA MGP_C57BL6NJ_T0090790.1 MGP_C57BL6NJ_G0034541.1 mouse_genomes_project 8 111704646 111731613 - MGP_C57BL6NJ_P0090790 Zdhhc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089112.1 MGP_C57BL6NJ_G0034017.1 mouse_genomes_project 8 33310135 33333675 - MGP_C57BL6NJ_P0089112 Ubxn8 protein_coding protein_coding MGP_C57BL6NJ_T0005497.1 MGP_C57BL6NJ_G0004655.1 mouse_genomes_project 8 10759058 10765722 + Gm17023 antisense antisense MGP_C57BL6NJ_T0089222.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41334489 41479876 - MGP_C57BL6NJ_P0089222 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089223.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41334493 41460824 - MGP_C57BL6NJ_P0089223 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089224.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41334493 41398049 - MGP_C57BL6NJ_P0089224 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089225.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41334627 41385146 - MGP_C57BL6NJ_P0089225 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089226.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41342345 41343781 - Mtus1 protein_coding retained_intron MGP_C57BL6NJ_T0089227.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41344250 41360317 - Mtus1 protein_coding processed_transcript MGP_C57BL6NJ_T0089228.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41344407 41360331 - MGP_C57BL6NJ_P0089228 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089229.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41345918 41359882 - MGP_C57BL6NJ_P0089229 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089230.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41357937 41382825 - Mtus1 protein_coding processed_transcript MGP_C57BL6NJ_T0089231.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41362524 41398038 - Mtus1 protein_coding processed_transcript MGP_C57BL6NJ_T0089232.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41363084 41366142 - Mtus1 protein_coding retained_intron MGP_C57BL6NJ_T0089233.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41393264 41426021 - MGP_C57BL6NJ_P0089233 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089234.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41393379 41479876 - MGP_C57BL6NJ_P0089234 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0089235.1 MGP_C57BL6NJ_G0034053.1 mouse_genomes_project 8 41427807 41479868 - MGP_C57BL6NJ_P0089235 Mtus1 protein_coding protein_coding MGP_C57BL6NJ_T0016418.1 MGP_C57BL6NJ_G0014463.1 mouse_genomes_project 8 19543926 19544407 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090864.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112539919 112587608 + MGP_C57BL6NJ_P0090864 Prmt7 protein_coding protein_coding MGP_C57BL6NJ_T0090865.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112540006 112570294 + MGP_C57BL6NJ_P0090865 Prmt7 protein_coding protein_coding MGP_C57BL6NJ_T0090866.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112540020 112578090 + Prmt7 protein_coding retained_intron MGP_C57BL6NJ_T0090867.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112540201 112560679 + MGP_C57BL6NJ_P0090867 Prmt7 protein_coding protein_coding MGP_C57BL6NJ_T0090868.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112541509 112572964 + MGP_C57BL6NJ_P0090868 Prmt7 protein_coding protein_coding MGP_C57BL6NJ_T0090869.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112569429 112572299 + Prmt7 protein_coding processed_transcript MGP_C57BL6NJ_T0090870.1 MGP_C57BL6NJ_G0034574.1 mouse_genomes_project 8 112572665 112579628 + Prmt7 protein_coding processed_transcript MGP_C57BL6NJ_T0091109.1 MGP_C57BL6NJ_G0034657.1 mouse_genomes_project 8 123645315 123658049 + MGP_C57BL6NJ_P0091109 Dynlrb2 protein_coding protein_coding MGP_C57BL6NJ_T0090682.1 MGP_C57BL6NJ_G0034499.1 mouse_genomes_project 8 110299736 110314638 - MGP_C57BL6NJ_P0090682 Cmtm2a protein_coding protein_coding MGP_C57BL6NJ_T0089645.1 MGP_C57BL6NJ_G0034177.1 mouse_genomes_project 8 72784832 72791067 - MGP_C57BL6NJ_P0089645 Yjefn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089646.1 MGP_C57BL6NJ_G0034177.1 mouse_genomes_project 8 72784839 72799818 - MGP_C57BL6NJ_P0089646 Yjefn3 protein_coding protein_coding MGP_C57BL6NJ_T0089647.1 MGP_C57BL6NJ_G0034177.1 mouse_genomes_project 8 72784839 72788060 - MGP_C57BL6NJ_P0089647 Yjefn3 protein_coding protein_coding MGP_C57BL6NJ_T0089648.1 MGP_C57BL6NJ_G0034177.1 mouse_genomes_project 8 72784841 72785237 - Yjefn3 protein_coding processed_transcript MGP_C57BL6NJ_T0091097.1 MGP_C57BL6NJ_G0034654.1 mouse_genomes_project 8 121413964 121421595 + MGP_C57BL6NJ_P0091097 Clec3a protein_coding protein_coding MGP_C57BL6NJ_T0009257.1 MGP_C57BL6NJ_G0007444.1 mouse_genomes_project 8 8544620 8592669 + 9530052E02Rik lincRNA lincRNA MGP_C57BL6NJ_T0009258.1 MGP_C57BL6NJ_G0007444.1 mouse_genomes_project 8 8587710 8592674 + 9530052E02Rik lincRNA lincRNA MGP_C57BL6NJ_T0089734.1 MGP_C57BL6NJ_G0034198.1 mouse_genomes_project 8 73266599 73288374 - MGP_C57BL6NJ_P0089734 Upf1 protein_coding protein_coding MGP_C57BL6NJ_T0089735.1 MGP_C57BL6NJ_G0034198.1 mouse_genomes_project 8 73267433 73288094 - MGP_C57BL6NJ_P0089735 Upf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089154.1 MGP_C57BL6NJ_G0034030.1 mouse_genomes_project 8 35354638 35378943 - MGP_C57BL6NJ_P0089154 Eri1 protein_coding protein_coding MGP_C57BL6NJ_T0009306.1 MGP_C57BL6NJ_G0007484.1 mouse_genomes_project 8 77942974 78193344 - lincRNA lincRNA MGP_C57BL6NJ_T0009307.1 MGP_C57BL6NJ_G0007484.1 mouse_genomes_project 8 78183233 78193317 - lincRNA lincRNA MGP_C57BL6NJ_T0090966.1 MGP_C57BL6NJ_G0034611.1 mouse_genomes_project 8 116638017 116651484 - MGP_C57BL6NJ_P0090966 Chst4 protein_coding protein_coding MGP_C57BL6NJ_T0090636.1 MGP_C57BL6NJ_G0034482.1 mouse_genomes_project 8 100432601 100448871 - MGP_C57BL6NJ_P0090636 Cfap20 protein_coding protein_coding MGP_C57BL6NJ_T0089569.1 MGP_C57BL6NJ_G0034155.1 mouse_genomes_project 8 70959228 71042411 + MGP_C57BL6NJ_P0089569 Sh2d4a protein_coding protein_coding MGP_C57BL6NJ_T0089207.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40883699 40968598 - MGP_C57BL6NJ_P0089207 Mtmr7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089208.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40883705 40968585 - MGP_C57BL6NJ_P0089208 Mtmr7 protein_coding protein_coding MGP_C57BL6NJ_T0089209.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40886462 40922938 - MGP_C57BL6NJ_P0089209 Mtmr7 protein_coding protein_coding MGP_C57BL6NJ_T0089210.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40887265 40968601 - MGP_C57BL6NJ_P0089210 Mtmr7 protein_coding protein_coding MGP_C57BL6NJ_T0089211.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40898090 40968568 - MGP_C57BL6NJ_P0089211 Mtmr7 protein_coding protein_coding MGP_C57BL6NJ_T0089212.1 MGP_C57BL6NJ_G0034047.1 mouse_genomes_project 8 40940731 40968606 - Mtmr7 protein_coding processed_transcript MGP_C57BL6NJ_T0089441.1 MGP_C57BL6NJ_G0034116.1 mouse_genomes_project 8 59223573 59227108 + MGP_C57BL6NJ_P0089441 Hand2 protein_coding protein_coding MGP_C57BL6NJ_T0088716.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10760170 10789505 - MGP_C57BL6NJ_P0088716 Pcid2 protein_coding protein_coding MGP_C57BL6NJ_T0088717.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10760170 10789505 - MGP_C57BL6NJ_P0088717 Pcid2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088718.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10761181 10788856 - MGP_C57BL6NJ_P0088718 Pcid2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088719.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10762705 10769615 - Pcid2 protein_coding processed_transcript MGP_C57BL6NJ_T0088720.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10762877 10788877 - Pcid2 protein_coding processed_transcript MGP_C57BL6NJ_T0088721.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10768256 10781372 - MGP_C57BL6NJ_P0088721 Pcid2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088722.1 MGP_C57BL6NJ_G0033864.1 mouse_genomes_project 8 10768305 10788867 - MGP_C57BL6NJ_P0088722 Pcid2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090969.1 MGP_C57BL6NJ_G0034614.1 mouse_genomes_project 8 116725520 116727511 + MGP_C57BL6NJ_P0090969 Gm21964 protein_coding protein_coding MGP_C57BL6NJ_T0088962.1 MGP_C57BL6NJ_G0033964.1 mouse_genomes_project 8 23502985 23575255 - MGP_C57BL6NJ_P0088962 Adam18 protein_coding protein_coding MGP_C57BL6NJ_T0088963.1 MGP_C57BL6NJ_G0033964.1 mouse_genomes_project 8 23502985 23575255 - MGP_C57BL6NJ_P0088963 Adam18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088964.1 MGP_C57BL6NJ_G0033964.1 mouse_genomes_project 8 23502989 23526555 - Adam18 protein_coding processed_transcript MGP_C57BL6NJ_T0101942.1 MGP_C57BL6NJ_G0039988.1 mouse_genomes_project 8 69890162 69890312 - Gm24677 snoRNA snoRNA MGP_C57BL6NJ_T0090085.1 MGP_C57BL6NJ_G0034316.1 mouse_genomes_project 8 84639659 84762951 - MGP_C57BL6NJ_P0090085 Gab1 protein_coding protein_coding MGP_C57BL6NJ_T0090177.1 MGP_C57BL6NJ_G0034345.1 mouse_genomes_project 8 88152435 88164331 - MGP_C57BL6NJ_P0090177 Il27ra protein_coding protein_coding MGP_C57BL6NJ_T0016404.1 MGP_C57BL6NJ_G0014449.1 mouse_genomes_project 8 10701433 10701703 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011265.1 MGP_C57BL6NJ_G0009350.1 mouse_genomes_project 8 111522782 111522891 - Gm27320 miRNA miRNA MGP_C57BL6NJ_T0089368.1 MGP_C57BL6NJ_G0034091.1 mouse_genomes_project 8 48423411 48466707 - MGP_C57BL6NJ_P0089368 Trappc11 protein_coding protein_coding MGP_C57BL6NJ_T0089369.1 MGP_C57BL6NJ_G0034091.1 mouse_genomes_project 8 48423424 48458257 - Trappc11 protein_coding retained_intron MGP_C57BL6NJ_T0089370.1 MGP_C57BL6NJ_G0034091.1 mouse_genomes_project 8 48423425 48466710 - Trappc11 protein_coding retained_intron MGP_C57BL6NJ_T0089371.1 MGP_C57BL6NJ_G0034091.1 mouse_genomes_project 8 48437526 48444630 - MGP_C57BL6NJ_P0089371 Trappc11 protein_coding protein_coding MGP_C57BL6NJ_T0089372.1 MGP_C57BL6NJ_G0034091.1 mouse_genomes_project 8 48457896 48461270 - Trappc11 protein_coding retained_intron MGP_C57BL6NJ_T0088772.1 MGP_C57BL6NJ_G0033882.1 mouse_genomes_project 8 11631947 11637431 - MGP_C57BL6NJ_P0088772 Coprs protein_coding protein_coding MGP_C57BL6NJ_T0090381.1 MGP_C57BL6NJ_G0034402.1 mouse_genomes_project 8 90011985 90145905 - MGP_C57BL6NJ_P0090381 Itfg1 protein_coding protein_coding MGP_C57BL6NJ_T0089893.1 MGP_C57BL6NJ_G0034251.1 mouse_genomes_project 8 74707326 74713373 - MGP_C57BL6NJ_P0089893 Nxnl1 protein_coding protein_coding MGP_C57BL6NJ_T0089894.1 MGP_C57BL6NJ_G0034251.1 mouse_genomes_project 8 74707326 74713421 - MGP_C57BL6NJ_P0089894 Nxnl1 protein_coding protein_coding MGP_C57BL6NJ_T0089245.1 MGP_C57BL6NJ_G0034057.1 mouse_genomes_project 8 41759585 41779178 - MGP_C57BL6NJ_P0089245 Frg1 protein_coding protein_coding MGP_C57BL6NJ_T0090543.1 MGP_C57BL6NJ_G0034450.1 mouse_genomes_project 8 99027230 99029058 + MGP_C57BL6NJ_P0090543 Mt4 protein_coding protein_coding MGP_C57BL6NJ_T0101934.1 MGP_C57BL6NJ_G0039980.1 mouse_genomes_project 8 58342727 58342859 - Gm24375 snoRNA snoRNA MGP_C57BL6NJ_T0089748.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452198 73454628 - 2810428I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0089749.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452201 73454019 - 2810428I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0089750.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452201 73454333 - 2810428I15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0089751.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452201 73454659 - MGP_C57BL6NJ_P0089751 2810428I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0089752.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452205 73454644 - MGP_C57BL6NJ_P0089752 2810428I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0089753.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73452304 73454015 - 2810428I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0089754.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73453151 73454606 - 2810428I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0089755.1 MGP_C57BL6NJ_G0034204.1 mouse_genomes_project 8 73453757 73454620 - 2810428I15Rik protein_coding retained_intron MGP_C57BL6NJ_T0089337.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47299710 47371100 + MGP_C57BL6NJ_P0089337 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0089338.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47299768 47350570 + Acsl1 protein_coding retained_intron MGP_C57BL6NJ_T0089339.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47299846 47345330 + MGP_C57BL6NJ_P0089339 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0089340.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47324868 47370630 + MGP_C57BL6NJ_P0089340 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0089341.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47324868 47339611 + MGP_C57BL6NJ_P0089341 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0089342.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47326726 47369529 + MGP_C57BL6NJ_P0089342 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0089343.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47361834 47363701 + Acsl1 protein_coding retained_intron MGP_C57BL6NJ_T0089344.1 MGP_C57BL6NJ_G0034083.1 mouse_genomes_project 8 47366112 47369504 + MGP_C57BL6NJ_P0089344 Acsl1 protein_coding protein_coding MGP_C57BL6NJ_T0009317.1 MGP_C57BL6NJ_G0007493.1 mouse_genomes_project 8 88858894 88863686 + Gm26664 lincRNA lincRNA MGP_C57BL6NJ_T0090612.1 MGP_C57BL6NJ_G0034474.1 mouse_genomes_project 8 100022256 100046003 + MGP_C57BL6NJ_P0090612 Drc7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089430.1 MGP_C57BL6NJ_G0034113.1 mouse_genomes_project 8 58120318 58149871 + MGP_C57BL6NJ_P0089430 Hpgd protein_coding protein_coding MGP_C57BL6NJ_T0011250.1 MGP_C57BL6NJ_G0009335.1 mouse_genomes_project 8 89138333 89138442 - Gm24197 miRNA miRNA MGP_C57BL6NJ_T0101937.1 MGP_C57BL6NJ_G0039983.1 mouse_genomes_project 8 65099522 65099636 + Gm22324 snoRNA snoRNA MGP_C57BL6NJ_T0088731.1 MGP_C57BL6NJ_G0033867.1 mouse_genomes_project 8 10871226 10901526 - MGP_C57BL6NJ_P0088731 Grtp1 protein_coding protein_coding MGP_C57BL6NJ_T0011253.1 MGP_C57BL6NJ_G0009338.1 mouse_genomes_project 8 89992527 89992644 + Mir8109 miRNA miRNA MGP_C57BL6NJ_T0090988.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531632 117569887 + MGP_C57BL6NJ_P0090988 Cog4 protein_coding protein_coding MGP_C57BL6NJ_T0090989.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531633 117538332 + MGP_C57BL6NJ_P0090989 Cog4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090990.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531643 117536949 + MGP_C57BL6NJ_P0090990 Cog4 protein_coding protein_coding MGP_C57BL6NJ_T0090991.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531648 117534877 + Cog4 protein_coding retained_intron MGP_C57BL6NJ_T0090992.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531660 117538396 + Cog4 protein_coding processed_transcript MGP_C57BL6NJ_T0090993.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531660 117538433 + MGP_C57BL6NJ_P0090993 Cog4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090994.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531660 117538387 + MGP_C57BL6NJ_P0090994 Cog4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090995.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117531663 117569520 + MGP_C57BL6NJ_P0090995 Cog4 protein_coding protein_coding MGP_C57BL6NJ_T0090996.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117534474 117569876 + MGP_C57BL6NJ_P0090996 Cog4 protein_coding protein_coding MGP_C57BL6NJ_T0090997.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117546629 117555337 + Cog4 protein_coding retained_intron MGP_C57BL6NJ_T0090998.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117546784 117569520 + MGP_C57BL6NJ_P0090998 Cog4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090999.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117550017 117553572 + Cog4 protein_coding retained_intron MGP_C57BL6NJ_T0091000.1 MGP_C57BL6NJ_G0034622.1 mouse_genomes_project 8 117567797 117569411 + Cog4 protein_coding retained_intron MGP_C57BL6NJ_T0018954.1 MGP_C57BL6NJ_G0016117.1 mouse_genomes_project 8 104771587 104878817 - Gm15680 processed_transcript processed_transcript MGP_C57BL6NJ_T0089796.1 MGP_C57BL6NJ_G0034217.1 mouse_genomes_project 8 73694628 73698720 + MGP_C57BL6NJ_P0089796 Gm3336 protein_coding protein_coding MGP_C57BL6NJ_T0089644.1 MGP_C57BL6NJ_G0034176.1 mouse_genomes_project 8 72777396 72784739 - MGP_C57BL6NJ_P0089644 Cilp2 protein_coding protein_coding MGP_C57BL6NJ_T0091420.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131103033 131119532 + MGP_C57BL6NJ_P0091420 Zfp276 protein_coding protein_coding MGP_C57BL6NJ_T0091421.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131103109 131106475 + Zfp276 protein_coding retained_intron MGP_C57BL6NJ_T0091422.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131103122 131119530 + Zfp276 protein_coding retained_intron MGP_C57BL6NJ_T0091423.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131103524 131114857 + MGP_C57BL6NJ_P0091423 Zfp276 protein_coding protein_coding MGP_C57BL6NJ_T0091424.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131107166 131117909 + Zfp276 protein_coding retained_intron MGP_C57BL6NJ_T0091425.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131108298 131117704 + Zfp276 protein_coding retained_intron MGP_C57BL6NJ_T0091426.1 MGP_C57BL6NJ_G0034743.1 mouse_genomes_project 8 131114607 131115430 + Zfp276 protein_coding retained_intron MGP_C57BL6NJ_T0088749.1 MGP_C57BL6NJ_G0033874.1 mouse_genomes_project 8 11160324 11186318 + MGP_C57BL6NJ_P0088749 Tmem255b protein_coding protein_coding MGP_C57BL6NJ_T0088750.1 MGP_C57BL6NJ_G0033874.1 mouse_genomes_project 8 11160324 11186318 + MGP_C57BL6NJ_P0088750 Tmem255b protein_coding protein_coding MGP_C57BL6NJ_T0089570.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71052552 71462215 - MGP_C57BL6NJ_P0089570 Csgalnact1 protein_coding protein_coding MGP_C57BL6NJ_T0089571.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71053738 71462183 - MGP_C57BL6NJ_P0089571 Csgalnact1 protein_coding protein_coding MGP_C57BL6NJ_T0089572.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71083584 71462171 - MGP_C57BL6NJ_P0089572 Csgalnact1 protein_coding protein_coding MGP_C57BL6NJ_T0089573.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71159117 71462184 - Csgalnact1 protein_coding processed_transcript MGP_C57BL6NJ_T0089574.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71260574 71462183 - Csgalnact1 protein_coding processed_transcript MGP_C57BL6NJ_T0089575.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71260673 71462184 - Csgalnact1 protein_coding processed_transcript MGP_C57BL6NJ_T0089576.1 MGP_C57BL6NJ_G0034156.1 mouse_genomes_project 8 71353288 71462184 - Csgalnact1 protein_coding processed_transcript MGP_C57BL6NJ_T0011280.1 MGP_C57BL6NJ_G0009365.1 mouse_genomes_project 8 124707243 124707307 + Mir7078 miRNA miRNA MGP_C57BL6NJ_T0088709.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10716800 10736148 + MGP_C57BL6NJ_P0088709 F10 protein_coding protein_coding MGP_C57BL6NJ_T0088710.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10716814 10735372 + MGP_C57BL6NJ_P0088710 F10 protein_coding protein_coding MGP_C57BL6NJ_T0088711.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10717079 10725631 + MGP_C57BL6NJ_P0088711 F10 protein_coding protein_coding MGP_C57BL6NJ_T0088712.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10717330 10735367 + MGP_C57BL6NJ_P0088712 F10 protein_coding protein_coding MGP_C57BL6NJ_T0088713.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10717330 10735307 + MGP_C57BL6NJ_P0088713 F10 protein_coding protein_coding MGP_C57BL6NJ_T0088714.1 MGP_C57BL6NJ_G0033862.1 mouse_genomes_project 8 10717330 10734878 + MGP_C57BL6NJ_P0088714 F10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089700.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73162233 73194982 + MGP_C57BL6NJ_P0089700 Sugp2 protein_coding protein_coding MGP_C57BL6NJ_T0089701.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73162298 73172141 + MGP_C57BL6NJ_P0089701 Sugp2 protein_coding protein_coding MGP_C57BL6NJ_T0089702.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73162304 73184374 + Sugp2 protein_coding retained_intron MGP_C57BL6NJ_T0089703.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73164104 73172393 + MGP_C57BL6NJ_P0089703 Sugp2 protein_coding protein_coding MGP_C57BL6NJ_T0089704.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73173073 73187881 + Sugp2 protein_coding retained_intron MGP_C57BL6NJ_T0089705.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73177754 73181479 + Sugp2 protein_coding retained_intron MGP_C57BL6NJ_T0089706.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73181674 73213317 + Sugp2 protein_coding processed_transcript MGP_C57BL6NJ_T0089707.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73187086 73189014 + Sugp2 protein_coding retained_intron MGP_C57BL6NJ_T0089708.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73189362 73192716 + Sugp2 protein_coding processed_transcript MGP_C57BL6NJ_T0089709.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73190052 73192716 + Sugp2 protein_coding retained_intron MGP_C57BL6NJ_T0089710.1 MGP_C57BL6NJ_G0034193.1 mouse_genomes_project 8 73207036 73213316 + Sugp2 protein_coding processed_transcript MGP_C57BL6NJ_T0090679.1 MGP_C57BL6NJ_G0034497.1 mouse_genomes_project 8 110245926 110267794 - MGP_C57BL6NJ_P0090679 Tk2 protein_coding protein_coding MGP_C57BL6NJ_T0090507.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98063925 98087352 - MGP_C57BL6NJ_P0090507 Ces1f protein_coding protein_coding MGP_C57BL6NJ_T0090508.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98064277 98066429 - Ces1f protein_coding retained_intron MGP_C57BL6NJ_T0090509.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98073042 98074934 - Ces1f protein_coding retained_intron MGP_C57BL6NJ_T0090510.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98073494 98075061 - Ces1f protein_coding retained_intron MGP_C57BL6NJ_T0090511.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98081560 98082983 - Ces1f protein_coding retained_intron MGP_C57BL6NJ_T0090512.1 MGP_C57BL6NJ_G0034441.1 mouse_genomes_project 8 98081869 98087332 - MGP_C57BL6NJ_P0090512 Ces1f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0103559.1 MGP_C57BL6NJ_G0041351.1 mouse_genomes_project 8 19758689 19759967 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0090218.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88885546 88896127 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090219.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88885558 88886367 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090220.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88885578 88896513 + MGP_C57BL6NJ_P0090220 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090221.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891355 88904811 + MGP_C57BL6NJ_P0090221 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090222.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891736 88904790 + MGP_C57BL6NJ_P0090222 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090223.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891746 88895930 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090224.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891746 88896561 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090225.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891746 88900533 + MGP_C57BL6NJ_P0090225 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090226.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891753 88904789 + MGP_C57BL6NJ_P0090226 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090227.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891758 88901927 + MGP_C57BL6NJ_P0090227 Trmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090228.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891761 88900304 + MGP_C57BL6NJ_P0090228 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090229.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891772 88904811 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090230.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891772 88896419 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090231.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891773 88896002 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090232.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891774 88895165 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090233.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891775 88895999 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090234.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891775 88900452 + MGP_C57BL6NJ_P0090234 Trmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090235.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891775 88900476 + MGP_C57BL6NJ_P0090235 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090236.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88891778 88897050 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090237.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88894654 88904788 + MGP_C57BL6NJ_P0090237 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090238.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88894667 88900242 + MGP_C57BL6NJ_P0090238 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090239.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88894822 88900533 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090240.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88895579 88902134 + Trmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0090241.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88899924 88902438 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090242.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88901845 88902523 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090243.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88901976 88903264 + MGP_C57BL6NJ_P0090243 Trmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090244.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88902323 88902957 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090245.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88903400 88904789 + MGP_C57BL6NJ_P0090245 Trmt1 protein_coding protein_coding MGP_C57BL6NJ_T0090246.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88904073 88904789 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0090247.1 MGP_C57BL6NJ_G0034362.1 mouse_genomes_project 8 88904183 88904654 + Trmt1 protein_coding retained_intron MGP_C57BL6NJ_T0089531.1 MGP_C57BL6NJ_G0034142.1 mouse_genomes_project 8 67449771 67473052 - MGP_C57BL6NJ_P0089531 Trim60 protein_coding protein_coding MGP_C57BL6NJ_T0090721.1 MGP_C57BL6NJ_G0034516.1 mouse_genomes_project 8 111102820 111111362 + MGP_C57BL6NJ_P0090721 Ces2f protein_coding protein_coding MGP_C57BL6NJ_T0016477.1 MGP_C57BL6NJ_G0014522.1 mouse_genomes_project 8 124345995 124346399 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009375.1 MGP_C57BL6NJ_G0007531.1 mouse_genomes_project 8 128158679 128159405 + Gm26739 lincRNA lincRNA MGP_C57BL6NJ_T0090444.1 MGP_C57BL6NJ_G0034418.1 mouse_genomes_project 8 93122129 93166670 + MGP_C57BL6NJ_P0090444 Nod2 protein_coding protein_coding MGP_C57BL6NJ_T0090445.1 MGP_C57BL6NJ_G0034418.1 mouse_genomes_project 8 93122129 93166670 + MGP_C57BL6NJ_P0090445 Nod2 protein_coding protein_coding MGP_C57BL6NJ_T0090446.1 MGP_C57BL6NJ_G0034418.1 mouse_genomes_project 8 93122198 93141848 + Nod2 protein_coding retained_intron MGP_C57BL6NJ_T0090447.1 MGP_C57BL6NJ_G0034418.1 mouse_genomes_project 8 93126155 93166670 + MGP_C57BL6NJ_P0090447 Nod2 protein_coding protein_coding MGP_C57BL6NJ_T0089148.1 MGP_C57BL6NJ_G0034024.1 mouse_genomes_project 8 33868160 33879614 - MGP_C57BL6NJ_P0089148 Leprotl1 protein_coding protein_coding MGP_C57BL6NJ_T0089790.1 MGP_C57BL6NJ_G0034213.1 mouse_genomes_project 8 73605616 73618905 - MGP_C57BL6NJ_P0089790 Pgpep1 protein_coding protein_coding MGP_C57BL6NJ_T0011213.1 MGP_C57BL6NJ_G0009298.1 mouse_genomes_project 8 17577776 17577866 - Gm27852 miRNA miRNA MGP_C57BL6NJ_T0090207.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88553425 88700741 + Cacna1a protein_coding retained_intron MGP_C57BL6NJ_T0090208.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88584245 88830941 + MGP_C57BL6NJ_P0090208 Cacna1a protein_coding protein_coding MGP_C57BL6NJ_T0090209.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88584258 88830758 + MGP_C57BL6NJ_P0090209 Cacna1a protein_coding protein_coding MGP_C57BL6NJ_T0090210.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88728764 88735755 + Cacna1a protein_coding processed_transcript MGP_C57BL6NJ_T0090211.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88753954 88762616 + Cacna1a protein_coding retained_intron MGP_C57BL6NJ_T0090212.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88783502 88795355 + Cacna1a protein_coding retained_intron MGP_C57BL6NJ_T0090213.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88783515 88796317 + Cacna1a protein_coding retained_intron MGP_C57BL6NJ_T0090214.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88783541 88823009 + Cacna1a protein_coding retained_intron MGP_C57BL6NJ_T0090215.1 MGP_C57BL6NJ_G0034359.1 mouse_genomes_project 8 88784044 88802929 + Cacna1a protein_coding processed_transcript MGP_C57BL6NJ_T0089238.1 MGP_C57BL6NJ_G0034055.1 mouse_genomes_project 8 41597006 41694168 + MGP_C57BL6NJ_P0089238 Pcm1 protein_coding protein_coding MGP_C57BL6NJ_T0089239.1 MGP_C57BL6NJ_G0034055.1 mouse_genomes_project 8 41597043 41692090 + MGP_C57BL6NJ_P0089239 Pcm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011273.1 MGP_C57BL6NJ_G0009358.1 mouse_genomes_project 8 117230127 117230224 - Gm44489 miRNA miRNA MGP_C57BL6NJ_T0089548.1 MGP_C57BL6NJ_G0034146.1 mouse_genomes_project 8 69032390 69049895 - Tma16 protein_coding retained_intron MGP_C57BL6NJ_T0089549.1 MGP_C57BL6NJ_G0034146.1 mouse_genomes_project 8 69039801 69049917 - MGP_C57BL6NJ_P0089549 Tma16 protein_coding protein_coding MGP_C57BL6NJ_T0089550.1 MGP_C57BL6NJ_G0034146.1 mouse_genomes_project 8 69045792 69049928 - Tma16 protein_coding retained_intron MGP_C57BL6NJ_T0009341.1 MGP_C57BL6NJ_G0007509.1 mouse_genomes_project 8 96490633 96499336 + Irx3os lincRNA lincRNA MGP_C57BL6NJ_T0009342.1 MGP_C57BL6NJ_G0007509.1 mouse_genomes_project 8 96492393 96497012 + Irx3os lincRNA lincRNA MGP_C57BL6NJ_T0099169.1 MGP_C57BL6NJ_G0037233.1 mouse_genomes_project 8 80105036 80105164 - Gm27355 rRNA rRNA MGP_C57BL6NJ_T0100645.1 MGP_C57BL6NJ_G0038691.1 mouse_genomes_project 8 53526967 53527106 + Gm24929 snRNA snRNA MGP_C57BL6NJ_T0089787.1 MGP_C57BL6NJ_G0034211.1 mouse_genomes_project 8 73573645 73579448 + MGP_C57BL6NJ_P0089787 Lrrc25 protein_coding protein_coding MGP_C57BL6NJ_T0091316.1 MGP_C57BL6NJ_G0034715.1 mouse_genomes_project 8 130077723 130081452 - MGP_C57BL6NJ_P0091316 Trhr2 protein_coding protein_coding MGP_C57BL6NJ_T0091403.1 MGP_C57BL6NJ_G0034740.1 mouse_genomes_project 8 131067885 131077301 + MGP_C57BL6NJ_P0091403 Cdk10 protein_coding protein_coding MGP_C57BL6NJ_T0091404.1 MGP_C57BL6NJ_G0034740.1 mouse_genomes_project 8 131067896 131075042 + MGP_C57BL6NJ_P0091404 Cdk10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091577.1 MGP_C57BL6NJ_G0034792.1 mouse_genomes_project 8 136586171 136742140 + MGP_C57BL6NJ_P0091577 Nrp1 protein_coding protein_coding MGP_C57BL6NJ_T0091578.1 MGP_C57BL6NJ_G0034792.1 mouse_genomes_project 8 136586658 136742155 + MGP_C57BL6NJ_P0091578 Nrp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100640.1 MGP_C57BL6NJ_G0038686.1 mouse_genomes_project 8 37360196 37360298 - Gm25126 snRNA snRNA MGP_C57BL6NJ_T0090639.1 MGP_C57BL6NJ_G0034485.1 mouse_genomes_project 8 100596986 100613038 - MGP_C57BL6NJ_P0090639 Prss54 protein_coding protein_coding MGP_C57BL6NJ_T0090640.1 MGP_C57BL6NJ_G0034485.1 mouse_genomes_project 8 100597145 100612780 - MGP_C57BL6NJ_P0090640 Prss54 protein_coding protein_coding MGP_C57BL6NJ_T0090504.1 MGP_C57BL6NJ_G0034440.1 mouse_genomes_project 8 98005412 98035916 - MGP_C57BL6NJ_P0090504 Ces1e protein_coding protein_coding MGP_C57BL6NJ_T0090505.1 MGP_C57BL6NJ_G0034440.1 mouse_genomes_project 8 98005598 98035915 - MGP_C57BL6NJ_P0090505 Ces1e protein_coding protein_coding MGP_C57BL6NJ_T0090506.1 MGP_C57BL6NJ_G0034440.1 mouse_genomes_project 8 98015170 98024389 - Ces1e protein_coding retained_intron MGP_C57BL6NJ_T0090169.1 MGP_C57BL6NJ_G0034343.1 mouse_genomes_project 8 88126843 88128780 - MGP_C57BL6NJ_P0090169 2210011C24Rik protein_coding protein_coding MGP_C57BL6NJ_T0090170.1 MGP_C57BL6NJ_G0034343.1 mouse_genomes_project 8 88126860 88128033 - MGP_C57BL6NJ_P0090170 2210011C24Rik protein_coding protein_coding MGP_C57BL6NJ_T0090171.1 MGP_C57BL6NJ_G0034343.1 mouse_genomes_project 8 88127388 88128033 - MGP_C57BL6NJ_P0090171 2210011C24Rik protein_coding protein_coding MGP_C57BL6NJ_T0090172.1 MGP_C57BL6NJ_G0034343.1 mouse_genomes_project 8 88128065 88128793 - MGP_C57BL6NJ_P0090172 2210011C24Rik protein_coding protein_coding MGP_C57BL6NJ_T0090173.1 MGP_C57BL6NJ_G0034343.1 mouse_genomes_project 8 88128073 88128778 - MGP_C57BL6NJ_P0090173 2210011C24Rik protein_coding protein_coding MGP_C57BL6NJ_T0005523.1 MGP_C57BL6NJ_G0004676.1 mouse_genomes_project 8 64120112 64199166 + 4930512H18Rik antisense antisense MGP_C57BL6NJ_T0090742.1 MGP_C57BL6NJ_G0034524.1 mouse_genomes_project 8 111467295 111469811 - MGP_C57BL6NJ_P0090742 B3gnt9 protein_coding protein_coding MGP_C57BL6NJ_T0090743.1 MGP_C57BL6NJ_G0034524.1 mouse_genomes_project 8 111467296 111469809 - MGP_C57BL6NJ_P0090743 B3gnt9 protein_coding protein_coding MGP_C57BL6NJ_T0090744.1 MGP_C57BL6NJ_G0034524.1 mouse_genomes_project 8 111468979 111469809 - MGP_C57BL6NJ_P0090744 B3gnt9 protein_coding protein_coding MGP_C57BL6NJ_T0018938.1 MGP_C57BL6NJ_G0016110.1 mouse_genomes_project 8 75377825 75391391 - Gm16091 processed_transcript processed_transcript MGP_C57BL6NJ_T0011278.1 MGP_C57BL6NJ_G0009363.1 mouse_genomes_project 8 118498735 118498809 - Mir7076 miRNA miRNA MGP_C57BL6NJ_T0090953.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116353326 116449494 + MGP_C57BL6NJ_P0090953 Ap1g1 protein_coding protein_coding MGP_C57BL6NJ_T0090954.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116353669 116386495 + Ap1g1 protein_coding processed_transcript MGP_C57BL6NJ_T0090955.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116353678 116446648 + MGP_C57BL6NJ_P0090955 Ap1g1 protein_coding protein_coding MGP_C57BL6NJ_T0090956.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116427481 116434944 + Ap1g1 protein_coding retained_intron MGP_C57BL6NJ_T0090957.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116443737 116445580 + Ap1g1 protein_coding retained_intron MGP_C57BL6NJ_T0090958.1 MGP_C57BL6NJ_G0034607.1 mouse_genomes_project 8 116448397 116449493 + MGP_C57BL6NJ_P0090958 Ap1g1 protein_coding protein_coding MGP_C57BL6NJ_T0089248.1 MGP_C57BL6NJ_G0034060.1 mouse_genomes_project 8 43797841 43810045 - MGP_C57BL6NJ_P0089248 Zfp42 protein_coding protein_coding MGP_C57BL6NJ_T0088859.1 MGP_C57BL6NJ_G0033918.1 mouse_genomes_project 8 19277276 19279115 - MGP_C57BL6NJ_P0088859 Gm15056 protein_coding protein_coding MGP_C57BL6NJ_T0088860.1 MGP_C57BL6NJ_G0033918.1 mouse_genomes_project 8 19277276 19278644 - MGP_C57BL6NJ_P0088860 Gm15056 protein_coding protein_coding MGP_C57BL6NJ_T0091354.1 MGP_C57BL6NJ_G0034725.1 mouse_genomes_project 8 130340342 130342613 - MGP_C57BL6NJ_P0091354 Aprt protein_coding protein_coding MGP_C57BL6NJ_T0089236.1 MGP_C57BL6NJ_G0034054.1 mouse_genomes_project 8 41543419 41571687 - MGP_C57BL6NJ_P0089236 Fgl1 protein_coding protein_coding MGP_C57BL6NJ_T0089237.1 MGP_C57BL6NJ_G0034054.1 mouse_genomes_project 8 41551354 41571684 - Fgl1 protein_coding retained_intron MGP_C57BL6NJ_T0099159.1 MGP_C57BL6NJ_G0037223.1 mouse_genomes_project 8 2400978 2401097 - n-R5s94 rRNA rRNA MGP_C57BL6NJ_T0088883.1 MGP_C57BL6NJ_G0033936.1 mouse_genomes_project 8 20764384 20809783 - MGP_C57BL6NJ_P0088883 Nek5 protein_coding protein_coding MGP_C57BL6NJ_T0088884.1 MGP_C57BL6NJ_G0033936.1 mouse_genomes_project 8 20764399 20808392 - MGP_C57BL6NJ_P0088884 Nek5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088502.1 MGP_C57BL6NJ_G0033802.1 mouse_genomes_project 8 595666 608495 - Xab2 protein_coding retained_intron MGP_C57BL6NJ_T0088503.1 MGP_C57BL6NJ_G0033802.1 mouse_genomes_project 8 597332 608506 - MGP_C57BL6NJ_P0088503 Xab2 protein_coding protein_coding MGP_C57BL6NJ_T0088504.1 MGP_C57BL6NJ_G0033802.1 mouse_genomes_project 8 597335 608492 - Xab2 protein_coding retained_intron MGP_C57BL6NJ_T0088505.1 MGP_C57BL6NJ_G0033802.1 mouse_genomes_project 8 601562 608460 - MGP_C57BL6NJ_P0088505 Xab2 protein_coding protein_coding MGP_C57BL6NJ_T0088506.1 MGP_C57BL6NJ_G0033802.1 mouse_genomes_project 8 603240 608472 - MGP_C57BL6NJ_P0088506 Xab2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091244.1 MGP_C57BL6NJ_G0034701.1 mouse_genomes_project 8 128702222 128705981 + MGP_C57BL6NJ_P0091244 Foxf1 protein_coding protein_coding MGP_C57BL6NJ_T0009321.1 MGP_C57BL6NJ_G0007497.1 mouse_genomes_project 8 91458346 91466027 + Gm5118 lincRNA lincRNA MGP_C57BL6NJ_T0011227.1 MGP_C57BL6NJ_G0009312.1 mouse_genomes_project 8 66934293 66934403 - Mir710 miRNA miRNA MGP_C57BL6NJ_T0088499.1 MGP_C57BL6NJ_G0033801.1 mouse_genomes_project 8 574694 596320 + MGP_C57BL6NJ_P0088499 Camsap3 protein_coding protein_coding MGP_C57BL6NJ_T0088500.1 MGP_C57BL6NJ_G0033801.1 mouse_genomes_project 8 574694 596320 + MGP_C57BL6NJ_P0088500 Camsap3 protein_coding protein_coding MGP_C57BL6NJ_T0088501.1 MGP_C57BL6NJ_G0033801.1 mouse_genomes_project 8 575056 596295 + MGP_C57BL6NJ_P0088501 Camsap3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0009327.1 MGP_C57BL6NJ_G0007502.1 mouse_genomes_project 8 91827164 91828156 + 4930535O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0090067.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83407866 83447571 + MGP_C57BL6NJ_P0090067 Otud4 protein_coding protein_coding MGP_C57BL6NJ_T0090068.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83407952 83447519 + MGP_C57BL6NJ_P0090068 Otud4 protein_coding protein_coding MGP_C57BL6NJ_T0090069.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83419578 83429067 + Otud4 protein_coding retained_intron MGP_C57BL6NJ_T0090070.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83419990 83431090 + Otud4 protein_coding retained_intron MGP_C57BL6NJ_T0090071.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83430930 83438336 + MGP_C57BL6NJ_P0090071 Otud4 protein_coding protein_coding MGP_C57BL6NJ_T0090072.1 MGP_C57BL6NJ_G0034309.1 mouse_genomes_project 8 83436669 83441225 + MGP_C57BL6NJ_P0090072 Otud4 protein_coding protein_coding MGP_C57BL6NJ_T0090113.1 MGP_C57BL6NJ_G0034326.1 mouse_genomes_project 8 87399457 87431749 + MGP_C57BL6NJ_P0090113 Mgat4d protein_coding protein_coding MGP_C57BL6NJ_T0090114.1 MGP_C57BL6NJ_G0034326.1 mouse_genomes_project 8 87410668 87434667 + Mgat4d protein_coding processed_transcript MGP_C57BL6NJ_T0100679.1 MGP_C57BL6NJ_G0038725.1 mouse_genomes_project 8 129530487 129530594 + Gm24283 snRNA snRNA MGP_C57BL6NJ_T0100652.1 MGP_C57BL6NJ_G0038698.1 mouse_genomes_project 8 68516824 68516931 - Gm24205 snRNA snRNA MGP_C57BL6NJ_T0090829.1 MGP_C57BL6NJ_G0034560.1 mouse_genomes_project 8 112193951 112228521 + MGP_C57BL6NJ_P0090829 Pskh1 protein_coding protein_coding MGP_C57BL6NJ_T0009364.1 MGP_C57BL6NJ_G0007522.1 mouse_genomes_project 8 112572807 112764850 - Gm26786 lincRNA lincRNA MGP_C57BL6NJ_T0090794.1 MGP_C57BL6NJ_G0034544.1 mouse_genomes_project 8 111819109 111901649 - MGP_C57BL6NJ_P0090794 Agrp protein_coding protein_coding MGP_C57BL6NJ_T0090795.1 MGP_C57BL6NJ_G0034544.1 mouse_genomes_project 8 111819109 111820710 - MGP_C57BL6NJ_P0090795 Agrp protein_coding protein_coding MGP_C57BL6NJ_T0090796.1 MGP_C57BL6NJ_G0034544.1 mouse_genomes_project 8 111819209 111840490 - MGP_C57BL6NJ_P0090796 Agrp protein_coding protein_coding MGP_C57BL6NJ_T0101966.1 MGP_C57BL6NJ_G0040012.1 mouse_genomes_project 8 118190466 118190598 + Gm24793 snoRNA snoRNA MGP_C57BL6NJ_T0100658.1 MGP_C57BL6NJ_G0038704.1 mouse_genomes_project 8 81418768 81418874 + Gm23981 snRNA snRNA MGP_C57BL6NJ_T0005499.1 MGP_C57BL6NJ_G0004657.1 mouse_genomes_project 8 12817804 12821620 - 5830468F06Rik antisense antisense MGP_C57BL6NJ_T0089791.1 MGP_C57BL6NJ_G0034214.1 mouse_genomes_project 8 73632050 73638198 + MGP_C57BL6NJ_P0089791 Lsm4 protein_coding protein_coding MGP_C57BL6NJ_T0089792.1 MGP_C57BL6NJ_G0034214.1 mouse_genomes_project 8 73632234 73637494 + MGP_C57BL6NJ_P0089792 Lsm4 protein_coding protein_coding MGP_C57BL6NJ_T0089793.1 MGP_C57BL6NJ_G0034214.1 mouse_genomes_project 8 73637110 73637562 + Lsm4 protein_coding retained_intron MGP_C57BL6NJ_T0090672.1 MGP_C57BL6NJ_G0034494.1 mouse_genomes_project 8 108398533 108472926 - MGP_C57BL6NJ_P0090672 Cdh11 protein_coding protein_coding MGP_C57BL6NJ_T0009290.1 MGP_C57BL6NJ_G0007469.1 mouse_genomes_project 8 46336182 46350016 - lincRNA lincRNA MGP_C57BL6NJ_T0005539.1 MGP_C57BL6NJ_G0004690.1 mouse_genomes_project 8 110191063 110197863 - Gm10631 antisense antisense MGP_C57BL6NJ_T0088993.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24525859 24568996 + MGP_C57BL6NJ_P0088993 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0088994.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24530963 24588986 + MGP_C57BL6NJ_P0088994 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0088995.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24530963 24588986 + MGP_C57BL6NJ_P0088995 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0088996.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24530983 24588986 + MGP_C57BL6NJ_P0088996 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0088997.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24530986 24588053 + MGP_C57BL6NJ_P0088997 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0088998.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24531086 24569086 + Fgfr1 protein_coding processed_transcript MGP_C57BL6NJ_T0088999.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24531190 24587542 + MGP_C57BL6NJ_P0088999 Fgfr1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089000.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24531510 24588051 + MGP_C57BL6NJ_P0089000 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0089001.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24532028 24569157 + MGP_C57BL6NJ_P0089001 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0089002.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24545647 24587849 + MGP_C57BL6NJ_P0089002 Fgfr1 protein_coding protein_coding MGP_C57BL6NJ_T0089003.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24569044 24583535 + Fgfr1 protein_coding processed_transcript MGP_C57BL6NJ_T0089004.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24571501 24577110 + Fgfr1 protein_coding retained_intron MGP_C57BL6NJ_T0089005.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24576800 24588057 + Fgfr1 protein_coding retained_intron MGP_C57BL6NJ_T0089006.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24580276 24588056 + Fgfr1 protein_coding retained_intron MGP_C57BL6NJ_T0089007.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24582814 24585667 + Fgfr1 protein_coding retained_intron MGP_C57BL6NJ_T0089008.1 MGP_C57BL6NJ_G0033973.1 mouse_genomes_project 8 24583051 24585729 + Fgfr1 protein_coding retained_intron MGP_C57BL6NJ_T0089300.1 MGP_C57BL6NJ_G0034073.1 mouse_genomes_project 8 46662970 46700818 + MGP_C57BL6NJ_P0089300 Pdlim3 protein_coding protein_coding MGP_C57BL6NJ_T0089958.1 MGP_C57BL6NJ_G0034267.1 mouse_genomes_project 8 75323354 75331854 + MGP_C57BL6NJ_P0089958 Olfr373 protein_coding protein_coding MGP_C57BL6NJ_T0090632.1 MGP_C57BL6NJ_G0034480.1 mouse_genomes_project 8 100340400 100355268 + Usb1 protein_coding retained_intron MGP_C57BL6NJ_T0090633.1 MGP_C57BL6NJ_G0034480.1 mouse_genomes_project 8 100340437 100358503 + MGP_C57BL6NJ_P0090633 Usb1 protein_coding protein_coding MGP_C57BL6NJ_T0090634.1 MGP_C57BL6NJ_G0034480.1 mouse_genomes_project 8 100356140 100357820 + Usb1 protein_coding retained_intron MGP_C57BL6NJ_T0091343.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130224979 130308958 - MGP_C57BL6NJ_P0091343 Piezo1 protein_coding protein_coding MGP_C57BL6NJ_T0091344.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130224993 130243168 - MGP_C57BL6NJ_P0091344 Piezo1 protein_coding protein_coding MGP_C57BL6NJ_T0091345.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130225002 130228062 - Piezo1 protein_coding retained_intron MGP_C57BL6NJ_T0091346.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130225263 130308667 - MGP_C57BL6NJ_P0091346 Piezo1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091347.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130225263 130243167 - MGP_C57BL6NJ_P0091347 Piezo1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091348.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130225322 130226282 - Piezo1 protein_coding retained_intron MGP_C57BL6NJ_T0091349.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130225361 130225958 - Piezo1 protein_coding retained_intron MGP_C57BL6NJ_T0091350.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130226648 130227151 - Piezo1 protein_coding retained_intron MGP_C57BL6NJ_T0091351.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130228146 130228906 - Piezo1 protein_coding retained_intron MGP_C57BL6NJ_T0091352.1 MGP_C57BL6NJ_G0034723.1 mouse_genomes_project 8 130229205 130241486 - MGP_C57BL6NJ_P0091352 Piezo1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100655.1 MGP_C57BL6NJ_G0038701.1 mouse_genomes_project 8 79727791 79727898 - Gm22509 snRNA snRNA MGP_C57BL6NJ_T0089106.1 MGP_C57BL6NJ_G0034014.1 mouse_genomes_project 8 33108658 33109498 + MGP_C57BL6NJ_P0089106 5930422O12Rik protein_coding protein_coding MGP_C57BL6NJ_T0088846.1 MGP_C57BL6NJ_G0033907.1 mouse_genomes_project 8 17167451 17169703 + MGP_C57BL6NJ_P0088846 Spag11b protein_coding protein_coding MGP_C57BL6NJ_T0088847.1 MGP_C57BL6NJ_G0033907.1 mouse_genomes_project 8 17167490 17169442 + MGP_C57BL6NJ_P0088847 Spag11b protein_coding protein_coding MGP_C57BL6NJ_T0018911.1 MGP_C57BL6NJ_G0016099.1 mouse_genomes_project 8 5164389 5167834 + Gm28262 processed_transcript lincRNA MGP_C57BL6NJ_T0018912.1 MGP_C57BL6NJ_G0016099.1 mouse_genomes_project 8 5167797 5173328 + Gm28262 processed_transcript TEC MGP_C57BL6NJ_T0091294.1 MGP_C57BL6NJ_G0034712.1 mouse_genomes_project 8 129619135 129648787 - MGP_C57BL6NJ_P0091294 Car5a protein_coding protein_coding MGP_C57BL6NJ_T0091295.1 MGP_C57BL6NJ_G0034712.1 mouse_genomes_project 8 129620868 129630339 - Car5a protein_coding processed_transcript MGP_C57BL6NJ_T0091551.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135243804 135813545 + MGP_C57BL6NJ_P0091551 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091552.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135243967 135629849 + MGP_C57BL6NJ_P0091552 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091553.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135243967 135813861 + MGP_C57BL6NJ_P0091553 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091554.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244009 135609225 + Pard3 protein_coding retained_intron MGP_C57BL6NJ_T0091555.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244156 135813545 + MGP_C57BL6NJ_P0091555 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091556.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244170 135469747 + MGP_C57BL6NJ_P0091556 Pard3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091557.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244170 135566431 + MGP_C57BL6NJ_P0091557 Pard3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091558.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244206 135812380 + MGP_C57BL6NJ_P0091558 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091559.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244206 135812380 + MGP_C57BL6NJ_P0091559 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091560.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244256 135623777 + MGP_C57BL6NJ_P0091560 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091561.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244256 135623777 + MGP_C57BL6NJ_P0091561 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091562.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244256 135623777 + MGP_C57BL6NJ_P0091562 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091563.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244256 135813545 + MGP_C57BL6NJ_P0091563 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091564.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244256 135673890 + MGP_C57BL6NJ_P0091564 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091565.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244258 135623708 + MGP_C57BL6NJ_P0091565 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091566.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135244265 135597445 + MGP_C57BL6NJ_P0091566 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091567.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135253390 135623708 + MGP_C57BL6NJ_P0091567 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091568.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135493558 135630168 + MGP_C57BL6NJ_P0091568 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091569.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135552519 135557896 + Pard3 protein_coding retained_intron MGP_C57BL6NJ_T0091570.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135553415 135595672 + MGP_C57BL6NJ_P0091570 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091571.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135567548 135573027 + Pard3 protein_coding retained_intron MGP_C57BL6NJ_T0091572.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135585375 135597717 + MGP_C57BL6NJ_P0091572 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091573.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135602470 135630165 + MGP_C57BL6NJ_P0091573 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091574.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135607672 135673781 + Pard3 protein_coding retained_intron MGP_C57BL6NJ_T0091575.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135644769 135673797 + MGP_C57BL6NJ_P0091575 Pard3 protein_coding protein_coding MGP_C57BL6NJ_T0091576.1 MGP_C57BL6NJ_G0034791.1 mouse_genomes_project 8 135781294 135812423 + Pard3 protein_coding processed_transcript MGP_C57BL6NJ_T0090616.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100240492 100314661 - MGP_C57BL6NJ_P0090616 Cngb1 protein_coding protein_coding MGP_C57BL6NJ_T0090617.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100242428 100287778 - MGP_C57BL6NJ_P0090617 Cngb1 protein_coding protein_coding MGP_C57BL6NJ_T0090618.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100242434 100287798 - MGP_C57BL6NJ_P0090618 Cngb1 protein_coding protein_coding MGP_C57BL6NJ_T0090619.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296795 100311914 - Cngb1 protein_coding retained_intron MGP_C57BL6NJ_T0090620.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296795 100311914 - Cngb1 protein_coding retained_intron MGP_C57BL6NJ_T0090621.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296795 100299875 - Cngb1 protein_coding retained_intron MGP_C57BL6NJ_T0090622.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296795 100314661 - MGP_C57BL6NJ_P0090622 Cngb1 protein_coding protein_coding MGP_C57BL6NJ_T0090623.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296795 100302151 - MGP_C57BL6NJ_P0090623 Cngb1 protein_coding protein_coding MGP_C57BL6NJ_T0090624.1 MGP_C57BL6NJ_G0034477.1 mouse_genomes_project 8 100296798 100314646 - Cngb1 protein_coding retained_intron MGP_C57BL6NJ_T0009280.1 MGP_C57BL6NJ_G0007461.1 mouse_genomes_project 8 33429717 33431003 - 1700104B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0009281.1 MGP_C57BL6NJ_G0007461.1 mouse_genomes_project 8 33429717 33430998 - 1700104B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0089989.1 MGP_C57BL6NJ_G0034283.1 mouse_genomes_project 8 75847866 75863046 + MGP_C57BL6NJ_P0089989 Tmem38a protein_coding protein_coding MGP_C57BL6NJ_T0089937.1 MGP_C57BL6NJ_G0034262.1 mouse_genomes_project 8 75094497 75102213 + MGP_C57BL6NJ_P0089937 Zfp882 protein_coding protein_coding MGP_C57BL6NJ_T0089938.1 MGP_C57BL6NJ_G0034262.1 mouse_genomes_project 8 75094546 75099469 + MGP_C57BL6NJ_P0089938 Zfp882 protein_coding protein_coding MGP_C57BL6NJ_T0089939.1 MGP_C57BL6NJ_G0034262.1 mouse_genomes_project 8 75094794 75099473 + MGP_C57BL6NJ_P0089939 Zfp882 protein_coding protein_coding MGP_C57BL6NJ_T0090022.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80427830 80438050 + MGP_C57BL6NJ_P0090022 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090023.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80428160 80801758 + MGP_C57BL6NJ_P0090023 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090024.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80430675 80801753 + MGP_C57BL6NJ_P0090024 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090025.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80430675 80799742 + MGP_C57BL6NJ_P0090025 Nr3c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090026.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80430734 80438293 + MGP_C57BL6NJ_P0090026 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090027.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80430863 80800409 + MGP_C57BL6NJ_P0090027 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090028.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80437908 80799276 + MGP_C57BL6NJ_P0090028 Nr3c2 protein_coding protein_coding MGP_C57BL6NJ_T0090029.1 MGP_C57BL6NJ_G0034295.1 mouse_genomes_project 8 80690196 80741704 + Nr3c2 protein_coding processed_transcript MGP_C57BL6NJ_T0091277.1 MGP_C57BL6NJ_G0034709.1 mouse_genomes_project 8 129432300 129495268 + Jph3 protein_coding processed_transcript MGP_C57BL6NJ_T0091278.1 MGP_C57BL6NJ_G0034709.1 mouse_genomes_project 8 129435823 129496472 + MGP_C57BL6NJ_P0091278 Jph3 protein_coding protein_coding MGP_C57BL6NJ_T0091279.1 MGP_C57BL6NJ_G0034709.1 mouse_genomes_project 8 129435827 129499927 + MGP_C57BL6NJ_P0091279 Jph3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091280.1 MGP_C57BL6NJ_G0034709.1 mouse_genomes_project 8 129458908 129488221 + Jph3 protein_coding retained_intron MGP_C57BL6NJ_T0088615.1 MGP_C57BL6NJ_G0033831.1 mouse_genomes_project 8 1790695 1835050 - MGP_C57BL6NJ_P0088615 Shcbp1 protein_coding protein_coding MGP_C57BL6NJ_T0016437.1 MGP_C57BL6NJ_G0014482.1 mouse_genomes_project 8 53742513 53743479 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005547.1 MGP_C57BL6NJ_G0004696.1 mouse_genomes_project 8 116445273 116453493 - Gm17344 antisense antisense MGP_C57BL6NJ_T0005548.1 MGP_C57BL6NJ_G0004696.1 mouse_genomes_project 8 116447014 116453516 - Gm17344 antisense antisense MGP_C57BL6NJ_T0009357.1 MGP_C57BL6NJ_G0007518.1 mouse_genomes_project 8 99338768 99350027 - 9330175E14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009358.1 MGP_C57BL6NJ_G0007518.1 mouse_genomes_project 8 99345684 99350152 - 9330175E14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009359.1 MGP_C57BL6NJ_G0007518.1 mouse_genomes_project 8 99348996 99350975 - 9330175E14Rik lincRNA lincRNA MGP_C57BL6NJ_T0088949.1 MGP_C57BL6NJ_G0033959.1 mouse_genomes_project 8 22451274 22732153 + MGP_C57BL6NJ_P0088949 Zmat4 protein_coding protein_coding MGP_C57BL6NJ_T0088950.1 MGP_C57BL6NJ_G0033959.1 mouse_genomes_project 8 22487173 22907100 + MGP_C57BL6NJ_P0088950 Zmat4 protein_coding protein_coding MGP_C57BL6NJ_T0088951.1 MGP_C57BL6NJ_G0033959.1 mouse_genomes_project 8 22487173 23009630 + MGP_C57BL6NJ_P0088951 Zmat4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088952.1 MGP_C57BL6NJ_G0033959.1 mouse_genomes_project 8 22521097 22629121 + MGP_C57BL6NJ_P0088952 Zmat4 protein_coding protein_coding MGP_C57BL6NJ_T0088953.1 MGP_C57BL6NJ_G0033959.1 mouse_genomes_project 8 22768256 22857712 + Zmat4 protein_coding retained_intron MGP_C57BL6NJ_T0091516.1 MGP_C57BL6NJ_G0034776.1 mouse_genomes_project 8 132912450 132958653 - MGP_C57BL6NJ_P0091516 Egln1 protein_coding protein_coding MGP_C57BL6NJ_T0090659.1 MGP_C57BL6NJ_G0034490.1 mouse_genomes_project 8 100922325 100940662 - MGP_C57BL6NJ_P0090659 Slc38a7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090660.1 MGP_C57BL6NJ_G0034490.1 mouse_genomes_project 8 100925802 100927581 - Slc38a7 protein_coding retained_intron MGP_C57BL6NJ_T0090661.1 MGP_C57BL6NJ_G0034490.1 mouse_genomes_project 8 100927779 100929755 - Slc38a7 protein_coding retained_intron MGP_C57BL6NJ_T0005530.1 MGP_C57BL6NJ_G0004682.1 mouse_genomes_project 8 71798877 71819487 + Gm15716 antisense antisense MGP_C57BL6NJ_T0011991.1 MGP_C57BL6NJ_G0010076.1 mouse_genomes_project 8 112377020 112377515 - Gm27956 misc_RNA misc_RNA MGP_C57BL6NJ_T0089445.1 MGP_C57BL6NJ_G0034120.1 mouse_genomes_project 8 59472265 59605331 - MGP_C57BL6NJ_P0089445 Galnt7 protein_coding protein_coding MGP_C57BL6NJ_T0089446.1 MGP_C57BL6NJ_G0034120.1 mouse_genomes_project 8 59473137 59605303 - MGP_C57BL6NJ_P0089446 Galnt7 protein_coding protein_coding MGP_C57BL6NJ_T0089447.1 MGP_C57BL6NJ_G0034120.1 mouse_genomes_project 8 59474461 59486889 - Galnt7 protein_coding processed_transcript MGP_C57BL6NJ_T0089448.1 MGP_C57BL6NJ_G0034120.1 mouse_genomes_project 8 59490430 59605332 - Galnt7 protein_coding retained_intron MGP_C57BL6NJ_T0089923.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74869222 74882143 - MGP_C57BL6NJ_P0089923 Fcho1 protein_coding protein_coding MGP_C57BL6NJ_T0089924.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74869229 74886552 - MGP_C57BL6NJ_P0089924 Fcho1 protein_coding protein_coding MGP_C57BL6NJ_T0089925.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74869255 74886502 - Fcho1 protein_coding retained_intron MGP_C57BL6NJ_T0089926.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74869488 74886502 - MGP_C57BL6NJ_P0089926 Fcho1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089927.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74870472 74871942 - Fcho1 protein_coding retained_intron MGP_C57BL6NJ_T0089928.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74870524 74873015 - Fcho1 protein_coding retained_intron MGP_C57BL6NJ_T0089929.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74873377 74876389 - MGP_C57BL6NJ_P0089929 Fcho1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089930.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74875195 74877471 - Fcho1 protein_coding retained_intron MGP_C57BL6NJ_T0089931.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74876602 74886540 - MGP_C57BL6NJ_P0089931 Fcho1 protein_coding protein_coding MGP_C57BL6NJ_T0089932.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74876697 74882701 - Fcho1 protein_coding processed_transcript MGP_C57BL6NJ_T0089933.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74877652 74886483 - Fcho1 protein_coding retained_intron MGP_C57BL6NJ_T0089934.1 MGP_C57BL6NJ_G0034260.1 mouse_genomes_project 8 74878050 74884183 - MGP_C57BL6NJ_P0089934 Fcho1 protein_coding protein_coding MGP_C57BL6NJ_T0009378.1 MGP_C57BL6NJ_G0007534.1 mouse_genomes_project 8 128607787 128608051 + Gm28324 lincRNA lincRNA MGP_C57BL6NJ_T0018923.1 MGP_C57BL6NJ_G0016107.1 mouse_genomes_project 8 46482428 46498281 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018919.1 MGP_C57BL6NJ_G0016104.1 mouse_genomes_project 8 41361029 41367456 + B430010I23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0089609.1 MGP_C57BL6NJ_G0034165.1 mouse_genomes_project 8 72418742 72442807 - MGP_C57BL6NJ_P0089609 protein_coding protein_coding MGP_C57BL6NJ_T0090107.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87360913 87384861 - MGP_C57BL6NJ_P0090107 Elmod2 protein_coding protein_coding MGP_C57BL6NJ_T0090108.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87361303 87384861 - MGP_C57BL6NJ_P0090108 Elmod2 protein_coding protein_coding MGP_C57BL6NJ_T0090109.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87365317 87376105 - Elmod2 protein_coding retained_intron MGP_C57BL6NJ_T0090110.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87367595 87383829 - Elmod2 protein_coding retained_intron MGP_C57BL6NJ_T0090111.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87375700 87384779 - Elmod2 protein_coding retained_intron MGP_C57BL6NJ_T0090112.1 MGP_C57BL6NJ_G0034325.1 mouse_genomes_project 8 87380173 87384779 - Elmod2 protein_coding retained_intron MGP_C57BL6NJ_T0090483.1 MGP_C57BL6NJ_G0034429.1 mouse_genomes_project 8 96488742 96492135 - MGP_C57BL6NJ_P0090483 Irx3 protein_coding protein_coding MGP_C57BL6NJ_T0090484.1 MGP_C57BL6NJ_G0034429.1 mouse_genomes_project 8 96488742 96492134 - MGP_C57BL6NJ_P0090484 Irx3 protein_coding protein_coding MGP_C57BL6NJ_T0009395.1 MGP_C57BL6NJ_G0007546.1 mouse_genomes_project 8 131648983 131658586 - 4732419C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0009366.1 MGP_C57BL6NJ_G0007524.1 mouse_genomes_project 8 112946005 112955771 + 1110028F18Rik lincRNA lincRNA MGP_C57BL6NJ_T0089365.1 MGP_C57BL6NJ_G0034089.1 mouse_genomes_project 8 48075328 48254718 - MGP_C57BL6NJ_P0089365 Stox2 protein_coding protein_coding MGP_C57BL6NJ_T0089366.1 MGP_C57BL6NJ_G0034089.1 mouse_genomes_project 8 48075328 48189712 - MGP_C57BL6NJ_P0089366 Stox2 protein_coding protein_coding MGP_C57BL6NJ_T0088832.1 MGP_C57BL6NJ_G0033898.1 mouse_genomes_project 8 16852717 16899191 + MGP_C57BL6NJ_P0088832 Agpat5 protein_coding protein_coding MGP_C57BL6NJ_T0088833.1 MGP_C57BL6NJ_G0033898.1 mouse_genomes_project 8 16852719 16889938 + MGP_C57BL6NJ_P0088833 Agpat5 protein_coding protein_coding MGP_C57BL6NJ_T0089206.1 MGP_C57BL6NJ_G0034046.1 mouse_genomes_project 8 40840373 40883739 + MGP_C57BL6NJ_P0089206 Vps37a protein_coding protein_coding MGP_C57BL6NJ_T0091467.1 MGP_C57BL6NJ_G0034757.1 mouse_genomes_project 8 131818453 131821422 - MGP_C57BL6NJ_P0091467 Acta1 protein_coding protein_coding MGP_C57BL6NJ_T0009276.1 MGP_C57BL6NJ_G0007458.1 mouse_genomes_project 8 29975728 29982948 + 4933433F19Rik lincRNA lincRNA MGP_C57BL6NJ_T0088852.1 MGP_C57BL6NJ_G0033912.1 mouse_genomes_project 8 17260007 17262235 + MGP_C57BL6NJ_P0088852 Defb46 protein_coding protein_coding MGP_C57BL6NJ_T0090756.1 MGP_C57BL6NJ_G0034528.1 mouse_genomes_project 8 111490949 111496457 + MGP_C57BL6NJ_P0090756 Nol3 protein_coding protein_coding MGP_C57BL6NJ_T0089977.1 MGP_C57BL6NJ_G0034277.1 mouse_genomes_project 8 75678664 75704084 - MGP_C57BL6NJ_P0089977 Calr3 protein_coding protein_coding MGP_C57BL6NJ_T0089978.1 MGP_C57BL6NJ_G0034277.1 mouse_genomes_project 8 75678671 75692119 - MGP_C57BL6NJ_P0089978 Calr3 protein_coding protein_coding MGP_C57BL6NJ_T0088866.1 MGP_C57BL6NJ_G0033924.1 mouse_genomes_project 8 20406994 20425937 + MGP_C57BL6NJ_P0088866 Defb1 protein_coding protein_coding MGP_C57BL6NJ_T0090533.1 MGP_C57BL6NJ_G0034447.1 mouse_genomes_project 8 98898475 98919957 - MGP_C57BL6NJ_P0090533 Nudt21 protein_coding protein_coding MGP_C57BL6NJ_T0011270.1 MGP_C57BL6NJ_G0009355.1 mouse_genomes_project 8 114004783 114004853 + Mir140 miRNA miRNA MGP_C57BL6NJ_T0101929.1 MGP_C57BL6NJ_G0039975.1 mouse_genomes_project 8 46329885 46330022 - Gm23604 snoRNA snoRNA MGP_C57BL6NJ_T0090749.1 MGP_C57BL6NJ_G0034526.1 mouse_genomes_project 8 111479150 111483829 + MGP_C57BL6NJ_P0090749 Fbxl8 protein_coding protein_coding MGP_C57BL6NJ_T0090750.1 MGP_C57BL6NJ_G0034526.1 mouse_genomes_project 8 111479184 111483673 + MGP_C57BL6NJ_P0090750 Fbxl8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011286.1 MGP_C57BL6NJ_G0009371.1 mouse_genomes_project 8 130213666 130213760 - Gm24366 miRNA miRNA MGP_C57BL6NJ_T0090179.1 MGP_C57BL6NJ_G0034347.1 mouse_genomes_project 8 88194110 88195687 - MGP_C57BL6NJ_P0090179 Gm10643 protein_coding protein_coding MGP_C57BL6NJ_T0088746.1 MGP_C57BL6NJ_G0033871.1 mouse_genomes_project 8 11054542 11098024 + MGP_C57BL6NJ_P0088746 Tfdp1 protein_coding protein_coding MGP_C57BL6NJ_T0101970.1 MGP_C57BL6NJ_G0040016.1 mouse_genomes_project 8 129345821 129345900 - Gm23299 snoRNA snoRNA MGP_C57BL6NJ_T0088809.1 MGP_C57BL6NJ_G0033893.1 mouse_genomes_project 8 12854609 12858983 - MGP_C57BL6NJ_P0088809 BB014433 protein_coding protein_coding MGP_C57BL6NJ_T0088810.1 MGP_C57BL6NJ_G0033893.1 mouse_genomes_project 8 12854700 12855991 - MGP_C57BL6NJ_P0088810 BB014433 protein_coding protein_coding MGP_C57BL6NJ_T0088811.1 MGP_C57BL6NJ_G0033893.1 mouse_genomes_project 8 12855415 12858992 - MGP_C57BL6NJ_P0088811 BB014433 protein_coding protein_coding MGP_C57BL6NJ_T0089610.1 MGP_C57BL6NJ_G0034166.1 mouse_genomes_project 8 72474789 72489947 - MGP_C57BL6NJ_P0089610 Zfp868 protein_coding protein_coding MGP_C57BL6NJ_T0089611.1 MGP_C57BL6NJ_G0034166.1 mouse_genomes_project 8 72475346 72483786 - MGP_C57BL6NJ_P0089611 Zfp868 protein_coding protein_coding MGP_C57BL6NJ_T0089612.1 MGP_C57BL6NJ_G0034166.1 mouse_genomes_project 8 72476352 72477996 - Zfp868 protein_coding retained_intron MGP_C57BL6NJ_T0089613.1 MGP_C57BL6NJ_G0034166.1 mouse_genomes_project 8 72482801 72489944 - Zfp868 protein_coding retained_intron MGP_C57BL6NJ_T0089046.1 MGP_C57BL6NJ_G0033986.1 mouse_genomes_project 8 25064650 25083661 - MGP_C57BL6NJ_P0089046 Fnta protein_coding protein_coding MGP_C57BL6NJ_T0100674.1 MGP_C57BL6NJ_G0038720.1 mouse_genomes_project 8 118711733 118711837 + Gm23853 snRNA snRNA MGP_C57BL6NJ_T0016474.1 MGP_C57BL6NJ_G0014519.1 mouse_genomes_project 8 110961987 110963012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090951.1 MGP_C57BL6NJ_G0034605.1 mouse_genomes_project 8 116285171 116304349 + MGP_C57BL6NJ_P0090951 Zfp821 protein_coding protein_coding MGP_C57BL6NJ_T0009371.1 MGP_C57BL6NJ_G0007527.1 mouse_genomes_project 8 117550146 117633564 - Gm26816 lincRNA lincRNA MGP_C57BL6NJ_T0100636.1 MGP_C57BL6NJ_G0038682.1 mouse_genomes_project 8 23874186 23874289 + Gm23898 snRNA snRNA MGP_C57BL6NJ_T0016407.1 MGP_C57BL6NJ_G0014452.1 mouse_genomes_project 8 12909195 12910217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016410.1 MGP_C57BL6NJ_G0014455.1 mouse_genomes_project 8 17549780 17550300 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088571.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1263393 1272530 + MGP_C57BL6NJ_P0088571 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088572.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1263461 1272530 + MGP_C57BL6NJ_P0088572 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088573.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1263461 1272530 + MGP_C57BL6NJ_P0088573 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088574.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1263497 1276056 + MGP_C57BL6NJ_P0088574 Map2k7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088575.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1263542 1272532 + MGP_C57BL6NJ_P0088575 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088576.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1264737 1272530 + MGP_C57BL6NJ_P0088576 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088577.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1267896 1270474 + MGP_C57BL6NJ_P0088577 Map2k7 protein_coding protein_coding MGP_C57BL6NJ_T0088578.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1269089 1270810 + Map2k7 protein_coding processed_transcript MGP_C57BL6NJ_T0088579.1 MGP_C57BL6NJ_G0033821.1 mouse_genomes_project 8 1269269 1270933 + Map2k7 protein_coding retained_intron MGP_C57BL6NJ_T0018916.1 MGP_C57BL6NJ_G0016102.1 mouse_genomes_project 8 23982588 23987285 + Gm16933 processed_transcript processed_transcript MGP_C57BL6NJ_T0088584.1 MGP_C57BL6NJ_G0033824.1 mouse_genomes_project 8 1282277 1283904 - MGP_C57BL6NJ_P0088584 Ctxn1 protein_coding protein_coding MGP_C57BL6NJ_T0090651.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100788161 100789028 + Setd6 protein_coding processed_transcript MGP_C57BL6NJ_T0090652.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100788178 100791257 + MGP_C57BL6NJ_P0090652 Setd6 protein_coding protein_coding MGP_C57BL6NJ_T0090653.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100788408 100789484 + Setd6 protein_coding processed_transcript MGP_C57BL6NJ_T0090654.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100788857 100790766 + Setd6 protein_coding processed_transcript MGP_C57BL6NJ_T0090655.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100788866 100790313 + Setd6 protein_coding processed_transcript MGP_C57BL6NJ_T0090656.1 MGP_C57BL6NJ_G0034488.1 mouse_genomes_project 8 100789255 100791118 + Setd6 protein_coding processed_transcript MGP_C57BL6NJ_T0089788.1 MGP_C57BL6NJ_G0034212.1 mouse_genomes_project 8 73587829 73590532 - MGP_C57BL6NJ_P0089788 Gdf15 protein_coding protein_coding MGP_C57BL6NJ_T0089789.1 MGP_C57BL6NJ_G0034212.1 mouse_genomes_project 8 73587830 73590893 - MGP_C57BL6NJ_P0089789 Gdf15 protein_coding protein_coding MGP_C57BL6NJ_T0009362.1 MGP_C57BL6NJ_G0007521.1 mouse_genomes_project 8 111887841 111901606 - Gm5914 lincRNA lincRNA MGP_C57BL6NJ_T0009363.1 MGP_C57BL6NJ_G0007521.1 mouse_genomes_project 8 111887855 111901741 - Gm5914 lincRNA lincRNA MGP_C57BL6NJ_T0088594.1 MGP_C57BL6NJ_G0033826.1 mouse_genomes_project 8 1309347 1352553 - MGP_C57BL6NJ_P0088594 Elavl1 protein_coding protein_coding MGP_C57BL6NJ_T0009356.1 MGP_C57BL6NJ_G0007517.1 mouse_genomes_project 8 99289323 99291025 + Gm15889 lincRNA lincRNA MGP_C57BL6NJ_T0088617.1 MGP_C57BL6NJ_G0033833.1 mouse_genomes_project 8 2698350 2699763 + MGP_C57BL6NJ_P0088617 protein_coding protein_coding MGP_C57BL6NJ_T0088752.1 MGP_C57BL6NJ_G0033876.1 mouse_genomes_project 8 11283652 11295381 - MGP_C57BL6NJ_P0088752 1700029H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0088753.1 MGP_C57BL6NJ_G0033876.1 mouse_genomes_project 8 11283652 11295368 - MGP_C57BL6NJ_P0088753 1700029H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0088754.1 MGP_C57BL6NJ_G0033876.1 mouse_genomes_project 8 11283930 11295325 - MGP_C57BL6NJ_P0088754 1700029H14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088755.1 MGP_C57BL6NJ_G0033876.1 mouse_genomes_project 8 11283951 11295324 - MGP_C57BL6NJ_P0088755 1700029H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0088756.1 MGP_C57BL6NJ_G0033876.1 mouse_genomes_project 8 11288874 11295325 - MGP_C57BL6NJ_P0088756 1700029H14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101953.1 MGP_C57BL6NJ_G0039999.1 mouse_genomes_project 8 91336363 91336480 - Gm24781 snoRNA snoRNA MGP_C57BL6NJ_T0090675.1 MGP_C57BL6NJ_G0034496.1 mouse_genomes_project 8 110183781 110238328 + MGP_C57BL6NJ_P0090675 Bean1 protein_coding protein_coding MGP_C57BL6NJ_T0090676.1 MGP_C57BL6NJ_G0034496.1 mouse_genomes_project 8 110183781 110238328 + MGP_C57BL6NJ_P0090676 Bean1 protein_coding protein_coding MGP_C57BL6NJ_T0090677.1 MGP_C57BL6NJ_G0034496.1 mouse_genomes_project 8 110183781 110238328 + MGP_C57BL6NJ_P0090677 Bean1 protein_coding protein_coding MGP_C57BL6NJ_T0090678.1 MGP_C57BL6NJ_G0034496.1 mouse_genomes_project 8 110184206 110238339 + MGP_C57BL6NJ_P0090678 Bean1 protein_coding protein_coding MGP_C57BL6NJ_T0091061.1 MGP_C57BL6NJ_G0034637.1 mouse_genomes_project 8 118438808 118477919 + MGP_C57BL6NJ_P0091061 Zfp1 protein_coding protein_coding MGP_C57BL6NJ_T0090705.1 MGP_C57BL6NJ_G0034508.1 mouse_genomes_project 8 110659599 110664960 + MGP_C57BL6NJ_P0090705 Pdp2 protein_coding protein_coding MGP_C57BL6NJ_T0090391.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90812713 90913612 - MGP_C57BL6NJ_P0090391 Abcc12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090392.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90837381 90913643 - MGP_C57BL6NJ_P0090392 Abcc12 protein_coding protein_coding MGP_C57BL6NJ_T0090393.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90837385 90867537 - MGP_C57BL6NJ_P0090393 Abcc12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090394.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90837643 90902975 - MGP_C57BL6NJ_P0090394 Abcc12 protein_coding protein_coding MGP_C57BL6NJ_T0090395.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90837643 90902975 - MGP_C57BL6NJ_P0090395 Abcc12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090396.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90837643 90902975 - MGP_C57BL6NJ_P0090396 Abcc12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090397.1 MGP_C57BL6NJ_G0034404.1 mouse_genomes_project 8 90866750 90913643 - MGP_C57BL6NJ_P0090397 Abcc12 protein_coding protein_coding MGP_C57BL6NJ_T0090442.1 MGP_C57BL6NJ_G0034416.1 mouse_genomes_project 8 92990900 93064602 + MGP_C57BL6NJ_P0090442 Nkd1 protein_coding protein_coding MGP_C57BL6NJ_T0090881.1 MGP_C57BL6NJ_G0034582.1 mouse_genomes_project 8 113275773 113283417 - MGP_C57BL6NJ_P0090881 protein_coding protein_coding MGP_C57BL6NJ_T0090882.1 MGP_C57BL6NJ_G0034582.1 mouse_genomes_project 8 113275872 113283341 - MGP_C57BL6NJ_P0090882 protein_coding protein_coding MGP_C57BL6NJ_T0090883.1 MGP_C57BL6NJ_G0034582.1 mouse_genomes_project 8 113275949 113283427 - MGP_C57BL6NJ_P0090883 protein_coding protein_coding MGP_C57BL6NJ_T0016455.1 MGP_C57BL6NJ_G0014500.1 mouse_genomes_project 8 83910508 83913535 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090751.1 MGP_C57BL6NJ_G0034527.1 mouse_genomes_project 8 111484303 111490189 + MGP_C57BL6NJ_P0090751 Hsf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090752.1 MGP_C57BL6NJ_G0034527.1 mouse_genomes_project 8 111484331 111490346 + MGP_C57BL6NJ_P0090752 Hsf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090753.1 MGP_C57BL6NJ_G0034527.1 mouse_genomes_project 8 111484376 111490161 + MGP_C57BL6NJ_P0090753 Hsf4 protein_coding protein_coding MGP_C57BL6NJ_T0090754.1 MGP_C57BL6NJ_G0034527.1 mouse_genomes_project 8 111484376 111490348 + MGP_C57BL6NJ_P0090754 Hsf4 protein_coding protein_coding MGP_C57BL6NJ_T0090755.1 MGP_C57BL6NJ_G0034527.1 mouse_genomes_project 8 111484376 111490161 + MGP_C57BL6NJ_P0090755 Hsf4 protein_coding protein_coding MGP_C57BL6NJ_T0090136.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87778978 87787146 + MGP_C57BL6NJ_P0090136 Ddx39 protein_coding protein_coding MGP_C57BL6NJ_T0090137.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87779069 87787072 + Ddx39 protein_coding retained_intron MGP_C57BL6NJ_T0090138.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87779069 87787073 + MGP_C57BL6NJ_P0090138 Ddx39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090139.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87779073 87790690 + MGP_C57BL6NJ_P0090139 Ddx39 protein_coding protein_coding MGP_C57BL6NJ_T0090140.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87779349 87787146 + MGP_C57BL6NJ_P0090140 Ddx39 protein_coding protein_coding MGP_C57BL6NJ_T0090141.1 MGP_C57BL6NJ_G0034335.1 mouse_genomes_project 8 87783410 87785088 + Ddx39 protein_coding retained_intron MGP_C57BL6NJ_T0011274.1 MGP_C57BL6NJ_G0009359.1 mouse_genomes_project 8 117719707 117719788 - Mir3473d miRNA miRNA MGP_C57BL6NJ_T0099524.1 MGP_C57BL6NJ_G0037576.1 mouse_genomes_project 8 127585985 127588662 + Gm15898 sense_intronic sense_intronic MGP_C57BL6NJ_T0016464.1 MGP_C57BL6NJ_G0014509.1 mouse_genomes_project 8 90158875 90159940 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090347.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313037 89320927 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0090348.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313037 89320856 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0090349.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313037 89320970 - MGP_C57BL6NJ_P0090349 Wdr83 protein_coding protein_coding MGP_C57BL6NJ_T0090350.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313038 89320139 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0090351.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313039 89314274 - MGP_C57BL6NJ_P0090351 Wdr83 protein_coding protein_coding MGP_C57BL6NJ_T0090352.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313040 89314294 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0090353.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313054 89321530 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0090354.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89313830 89320897 - MGP_C57BL6NJ_P0090354 Wdr83 protein_coding protein_coding MGP_C57BL6NJ_T0090355.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89314126 89320898 - MGP_C57BL6NJ_P0090355 Wdr83 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090356.1 MGP_C57BL6NJ_G0034389.1 mouse_genomes_project 8 89319918 89320893 - Wdr83 protein_coding retained_intron MGP_C57BL6NJ_T0101933.1 MGP_C57BL6NJ_G0039979.1 mouse_genomes_project 8 54534536 54534652 + Gm23666 snoRNA snoRNA MGP_C57BL6NJ_T0090540.1 MGP_C57BL6NJ_G0034449.1 mouse_genomes_project 8 98950919 98982730 - MGP_C57BL6NJ_P0090540 Bbs2 protein_coding protein_coding MGP_C57BL6NJ_T0090541.1 MGP_C57BL6NJ_G0034449.1 mouse_genomes_project 8 98951109 98953179 - Bbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0090542.1 MGP_C57BL6NJ_G0034449.1 mouse_genomes_project 8 98958105 98962745 - Bbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0090895.1 MGP_C57BL6NJ_G0034588.1 mouse_genomes_project 8 113463583 113467633 + MGP_C57BL6NJ_P0090895 Nip7 protein_coding protein_coding MGP_C57BL6NJ_T0090896.1 MGP_C57BL6NJ_G0034588.1 mouse_genomes_project 8 113463583 113467633 + MGP_C57BL6NJ_P0090896 Nip7 protein_coding protein_coding MGP_C57BL6NJ_T0090190.1 MGP_C57BL6NJ_G0034353.1 mouse_genomes_project 8 88290006 88304217 + MGP_C57BL6NJ_P0090190 4930432K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0090191.1 MGP_C57BL6NJ_G0034353.1 mouse_genomes_project 8 88290140 88314400 + MGP_C57BL6NJ_P0090191 4930432K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0090192.1 MGP_C57BL6NJ_G0034353.1 mouse_genomes_project 8 88290233 88314399 + MGP_C57BL6NJ_P0090192 4930432K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0089260.1 MGP_C57BL6NJ_G0034066.1 mouse_genomes_project 8 45765318 45785807 + MGP_C57BL6NJ_P0089260 Mtnr1a protein_coding protein_coding MGP_C57BL6NJ_T0089261.1 MGP_C57BL6NJ_G0034066.1 mouse_genomes_project 8 45765555 45784807 + MGP_C57BL6NJ_P0089261 Mtnr1a protein_coding protein_coding MGP_C57BL6NJ_T0009294.1 MGP_C57BL6NJ_G0007473.1 mouse_genomes_project 8 59234687 59245206 + lincRNA lincRNA MGP_C57BL6NJ_T0009256.1 MGP_C57BL6NJ_G0007443.1 mouse_genomes_project 8 8456901 8460931 - 3930402G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0089891.1 MGP_C57BL6NJ_G0034249.1 mouse_genomes_project 8 74688031 74693128 + MGP_C57BL6NJ_P0089891 Mvb12a protein_coding protein_coding MGP_C57BL6NJ_T0088535.1 MGP_C57BL6NJ_G0033810.1 mouse_genomes_project 8 702934 713593 - MGP_C57BL6NJ_P0088535 Clec4g protein_coding protein_coding MGP_C57BL6NJ_T0088536.1 MGP_C57BL6NJ_G0033810.1 mouse_genomes_project 8 712103 716691 - MGP_C57BL6NJ_P0088536 Clec4g protein_coding protein_coding MGP_C57BL6NJ_T0088537.1 MGP_C57BL6NJ_G0033810.1 mouse_genomes_project 8 713253 714693 - Clec4g protein_coding retained_intron MGP_C57BL6NJ_T0091032.1 MGP_C57BL6NJ_G0034631.1 mouse_genomes_project 8 118027135 118062213 - MGP_C57BL6NJ_P0091032 Rfwd3 protein_coding protein_coding MGP_C57BL6NJ_T0090832.1 MGP_C57BL6NJ_G0034563.1 mouse_genomes_project 8 112236329 112240161 - MGP_C57BL6NJ_P0090832 Lcat protein_coding protein_coding MGP_C57BL6NJ_T0091358.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130399884 130500643 - MGP_C57BL6NJ_P0091358 Cbfa2t3 protein_coding protein_coding MGP_C57BL6NJ_T0091359.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130400608 130462266 - MGP_C57BL6NJ_P0091359 Cbfa2t3 protein_coding protein_coding MGP_C57BL6NJ_T0091360.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130401083 130462369 - MGP_C57BL6NJ_P0091360 Cbfa2t3 protein_coding protein_coding MGP_C57BL6NJ_T0091361.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130418056 130462888 - MGP_C57BL6NJ_P0091361 Cbfa2t3 protein_coding protein_coding MGP_C57BL6NJ_T0091362.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130418060 130430726 - Cbfa2t3 protein_coding processed_transcript MGP_C57BL6NJ_T0091363.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130422046 130462305 - Cbfa2t3 protein_coding processed_transcript MGP_C57BL6NJ_T0091364.1 MGP_C57BL6NJ_G0034729.1 mouse_genomes_project 8 130434287 130500436 - Cbfa2t3 protein_coding retained_intron MGP_C57BL6NJ_T0090906.1 MGP_C57BL6NJ_G0034591.1 mouse_genomes_project 8 113564077 113600781 + MGP_C57BL6NJ_P0090906 Cyb5b protein_coding protein_coding MGP_C57BL6NJ_T0091076.1 MGP_C57BL6NJ_G0034647.1 mouse_genomes_project 8 118861623 118870468 + MGP_C57BL6NJ_P0091076 Terf2ip protein_coding protein_coding MGP_C57BL6NJ_T0101946.1 MGP_C57BL6NJ_G0039992.1 mouse_genomes_project 8 76445771 76445911 - Gm22532 snoRNA snoRNA MGP_C57BL6NJ_T0090062.1 MGP_C57BL6NJ_G0034306.1 mouse_genomes_project 8 82938806 82979587 - MGP_C57BL6NJ_P0090062 1700011L22Rik protein_coding protein_coding MGP_C57BL6NJ_T0009386.1 MGP_C57BL6NJ_G0007540.1 mouse_genomes_project 8 129203247 129208941 + 1700030M09Rik lincRNA lincRNA MGP_C57BL6NJ_T0009387.1 MGP_C57BL6NJ_G0007540.1 mouse_genomes_project 8 129203253 129208251 + 1700030M09Rik lincRNA lincRNA MGP_C57BL6NJ_T0011287.1 MGP_C57BL6NJ_G0009372.1 mouse_genomes_project 8 130393411 130393522 - Mir6396 miRNA miRNA MGP_C57BL6NJ_T0090323.1 MGP_C57BL6NJ_G0034382.1 mouse_genomes_project 8 89241507 89248225 - MGP_C57BL6NJ_P0090323 Best2 protein_coding protein_coding MGP_C57BL6NJ_T0005529.1 MGP_C57BL6NJ_G0004681.1 mouse_genomes_project 8 71154688 71156222 + Gm15656 antisense antisense MGP_C57BL6NJ_T0009322.1 MGP_C57BL6NJ_G0007498.1 mouse_genomes_project 8 91479688 91564555 + Gm27246 lincRNA lincRNA MGP_C57BL6NJ_T0016429.1 MGP_C57BL6NJ_G0014474.1 mouse_genomes_project 8 35964274 35967499 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088971.1 MGP_C57BL6NJ_G0033966.1 mouse_genomes_project 8 23634643 23724910 - MGP_C57BL6NJ_P0088971 Adam5 protein_coding protein_coding MGP_C57BL6NJ_T0088972.1 MGP_C57BL6NJ_G0033966.1 mouse_genomes_project 8 23634643 23742690 - MGP_C57BL6NJ_P0088972 Adam5 protein_coding protein_coding MGP_C57BL6NJ_T0088973.1 MGP_C57BL6NJ_G0033966.1 mouse_genomes_project 8 23634752 23742616 - Adam5 protein_coding processed_transcript MGP_C57BL6NJ_T0088974.1 MGP_C57BL6NJ_G0033966.1 mouse_genomes_project 8 23642130 23743000 - MGP_C57BL6NJ_P0088974 Adam5 protein_coding protein_coding MGP_C57BL6NJ_T0091176.1 MGP_C57BL6NJ_G0034687.1 mouse_genomes_project 8 127280602 127314208 - MGP_C57BL6NJ_P0091176 Cotl1 protein_coding protein_coding MGP_C57BL6NJ_T0091177.1 MGP_C57BL6NJ_G0034687.1 mouse_genomes_project 8 127280602 127314265 - MGP_C57BL6NJ_P0091177 Cotl1 protein_coding protein_coding MGP_C57BL6NJ_T0090324.1 MGP_C57BL6NJ_G0034383.1 mouse_genomes_project 8 89251738 89259083 - MGP_C57BL6NJ_P0090324 Asna1 protein_coding protein_coding MGP_C57BL6NJ_T0088623.1 MGP_C57BL6NJ_G0033838.1 mouse_genomes_project 8 7298273 7304326 + MGP_C57BL6NJ_P0088623 Gm10217 protein_coding protein_coding MGP_C57BL6NJ_T0090142.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87787048 87805124 - MGP_C57BL6NJ_P0090142 Adgre5 protein_coding protein_coding MGP_C57BL6NJ_T0090143.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87787048 87805124 - MGP_C57BL6NJ_P0090143 Adgre5 protein_coding protein_coding MGP_C57BL6NJ_T0090144.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87787159 87804967 - MGP_C57BL6NJ_P0090144 Adgre5 protein_coding protein_coding MGP_C57BL6NJ_T0090145.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87787161 87804971 - MGP_C57BL6NJ_P0090145 Adgre5 protein_coding protein_coding MGP_C57BL6NJ_T0090146.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87787615 87788607 - Adgre5 protein_coding retained_intron MGP_C57BL6NJ_T0090147.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87789023 87792102 - Adgre5 protein_coding retained_intron MGP_C57BL6NJ_T0090148.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87791345 87792128 - Adgre5 protein_coding retained_intron MGP_C57BL6NJ_T0090149.1 MGP_C57BL6NJ_G0034336.1 mouse_genomes_project 8 87797331 87804981 - MGP_C57BL6NJ_P0090149 Adgre5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100644.1 MGP_C57BL6NJ_G0038690.1 mouse_genomes_project 8 51792727 51792790 + Gm23986 snRNA snRNA MGP_C57BL6NJ_T0089880.1 MGP_C57BL6NJ_G0034245.1 mouse_genomes_project 8 74614899 74624718 - MGP_C57BL6NJ_P0089880 Ano8 protein_coding protein_coding MGP_C57BL6NJ_T0089881.1 MGP_C57BL6NJ_G0034245.1 mouse_genomes_project 8 74615261 74624510 - MGP_C57BL6NJ_P0089881 Ano8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090361.1 MGP_C57BL6NJ_G0034392.1 mouse_genomes_project 8 89359346 89373540 - MGP_C57BL6NJ_P0090361 Zfp791 protein_coding protein_coding MGP_C57BL6NJ_T0089095.1 MGP_C57BL6NJ_G0034007.1 mouse_genomes_project 8 30627827 30641306 - MGP_C57BL6NJ_P0089095 Mak16 protein_coding protein_coding MGP_C57BL6NJ_T0090862.1 MGP_C57BL6NJ_G0034572.1 mouse_genomes_project 8 112495690 112525377 + MGP_C57BL6NJ_P0090862 Slc7a6 protein_coding protein_coding MGP_C57BL6NJ_T0009284.1 MGP_C57BL6NJ_G0007463.1 mouse_genomes_project 8 33811623 33813137 + Gm26768 lincRNA lincRNA MGP_C57BL6NJ_T0089251.1 MGP_C57BL6NJ_G0034063.1 mouse_genomes_project 8 44197795 44241411 - MGP_C57BL6NJ_P0089251 protein_coding protein_coding MGP_C57BL6NJ_T0090127.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87732063 87762386 - MGP_C57BL6NJ_P0090127 Pkn1 protein_coding protein_coding MGP_C57BL6NJ_T0090128.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87732392 87757267 - MGP_C57BL6NJ_P0090128 Pkn1 protein_coding protein_coding MGP_C57BL6NJ_T0090129.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87732400 87762304 - MGP_C57BL6NJ_P0090129 Pkn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090130.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87732428 87737869 - Pkn1 protein_coding retained_intron MGP_C57BL6NJ_T0090131.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87732888 87734082 - Pkn1 protein_coding processed_transcript MGP_C57BL6NJ_T0090132.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87735331 87735901 - Pkn1 protein_coding retained_intron MGP_C57BL6NJ_T0090133.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87735786 87740137 - Pkn1 protein_coding processed_transcript MGP_C57BL6NJ_T0090134.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87740085 87743891 - Pkn1 protein_coding retained_intron MGP_C57BL6NJ_T0090135.1 MGP_C57BL6NJ_G0034334.1 mouse_genomes_project 8 87753126 87762374 - Pkn1 protein_coding retained_intron MGP_C57BL6NJ_T0011247.1 MGP_C57BL6NJ_G0009332.1 mouse_genomes_project 8 88352244 88352351 + Mir24-2 miRNA miRNA MGP_C57BL6NJ_T0088637.1 MGP_C57BL6NJ_G0033846.1 mouse_genomes_project 8 9009766 9036928 - MGP_C57BL6NJ_P0088637 Rab20 protein_coding protein_coding MGP_C57BL6NJ_T0089383.1 MGP_C57BL6NJ_G0034096.1 mouse_genomes_project 8 48659835 48661591 + MGP_C57BL6NJ_P0089383 protein_coding protein_coding MGP_C57BL6NJ_T0018920.1 MGP_C57BL6NJ_G0016105.1 mouse_genomes_project 8 41574526 41577292 + Gm16348 processed_transcript processed_transcript MGP_C57BL6NJ_T0018921.1 MGP_C57BL6NJ_G0016105.1 mouse_genomes_project 8 41574527 41576919 + Gm16348 processed_transcript processed_transcript MGP_C57BL6NJ_T0090266.1 MGP_C57BL6NJ_G0034369.1 mouse_genomes_project 8 89046693 89051778 - MGP_C57BL6NJ_P0090266 Calr protein_coding protein_coding MGP_C57BL6NJ_T0090267.1 MGP_C57BL6NJ_G0034369.1 mouse_genomes_project 8 89047439 89049760 - Calr protein_coding retained_intron MGP_C57BL6NJ_T0090268.1 MGP_C57BL6NJ_G0034369.1 mouse_genomes_project 8 89050280 89051674 - Calr protein_coding retained_intron MGP_C57BL6NJ_T0090269.1 MGP_C57BL6NJ_G0034369.1 mouse_genomes_project 8 89050593 89051670 - Calr protein_coding retained_intron MGP_C57BL6NJ_T0089033.1 MGP_C57BL6NJ_G0033980.1 mouse_genomes_project 8 24822225 24842190 + MGP_C57BL6NJ_P0089033 Lsm1 protein_coding protein_coding MGP_C57BL6NJ_T0091164.1 MGP_C57BL6NJ_G0034680.1 mouse_genomes_project 8 127023460 127046652 + MGP_C57BL6NJ_P0091164 Dnaaf1 protein_coding protein_coding MGP_C57BL6NJ_T0091132.1 MGP_C57BL6NJ_G0034668.1 mouse_genomes_project 8 124748020 124905492 + MGP_C57BL6NJ_P0091132 Plcg2 protein_coding protein_coding MGP_C57BL6NJ_T0009354.1 MGP_C57BL6NJ_G0007515.1 mouse_genomes_project 8 97096647 97097080 - lincRNA lincRNA MGP_C57BL6NJ_T0090100.1 MGP_C57BL6NJ_G0034320.1 mouse_genomes_project 8 86776594 86787859 - MGP_C57BL6NJ_P0090100 Zfp330 protein_coding protein_coding MGP_C57BL6NJ_T0100676.1 MGP_C57BL6NJ_G0038722.1 mouse_genomes_project 8 120468548 120468710 - Gm24291 snRNA snRNA MGP_C57BL6NJ_T0016447.1 MGP_C57BL6NJ_G0014492.1 mouse_genomes_project 8 77055290 77055773 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088902.1 MGP_C57BL6NJ_G0033946.1 mouse_genomes_project 8 21290757 21315051 - MGP_C57BL6NJ_P0088902 protein_coding protein_coding MGP_C57BL6NJ_T0088903.1 MGP_C57BL6NJ_G0033946.1 mouse_genomes_project 8 21290795 21314982 - MGP_C57BL6NJ_P0088903 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090195.1 MGP_C57BL6NJ_G0034356.1 mouse_genomes_project 8 88389643 88393880 - MGP_C57BL6NJ_P0090195 D8Ertd738e protein_coding protein_coding MGP_C57BL6NJ_T0011980.1 MGP_C57BL6NJ_G0010065.1 mouse_genomes_project 8 31069796 31070020 - Gm23539 misc_RNA misc_RNA MGP_C57BL6NJ_T0090592.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99782947 99805846 + MGP_C57BL6NJ_P0090592 Coq9 protein_coding protein_coding MGP_C57BL6NJ_T0090593.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99783031 99801667 + Coq9 protein_coding retained_intron MGP_C57BL6NJ_T0090594.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99783041 99788619 + Coq9 protein_coding retained_intron MGP_C57BL6NJ_T0090595.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99783055 99804146 + Coq9 protein_coding retained_intron MGP_C57BL6NJ_T0090596.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99783055 99804221 + MGP_C57BL6NJ_P0090596 Coq9 protein_coding protein_coding MGP_C57BL6NJ_T0090597.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99801074 99801867 + Coq9 protein_coding retained_intron MGP_C57BL6NJ_T0090598.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99801926 99804169 + Coq9 protein_coding processed_transcript MGP_C57BL6NJ_T0090599.1 MGP_C57BL6NJ_G0034467.1 mouse_genomes_project 8 99804465 99805288 + Coq9 protein_coding retained_intron MGP_C57BL6NJ_T0011995.1 MGP_C57BL6NJ_G0010080.1 mouse_genomes_project 8 131415670 131415951 + Gm22314 misc_RNA misc_RNA MGP_C57BL6NJ_T0101965.1 MGP_C57BL6NJ_G0040011.1 mouse_genomes_project 8 117614278 117614426 + Gm26132 snoRNA snoRNA MGP_C57BL6NJ_T0002481.1 MGP_C57BL6NJ_G0002369.1 mouse_genomes_project 8 115372603 115374309 + TEC TEC MGP_C57BL6NJ_T0099162.1 MGP_C57BL6NJ_G0037226.1 mouse_genomes_project 8 35662781 35662895 + Gm22216 rRNA rRNA MGP_C57BL6NJ_T0089517.1 MGP_C57BL6NJ_G0034135.1 mouse_genomes_project 8 66294756 66326388 - MGP_C57BL6NJ_P0089517 Sgol2b protein_coding protein_coding MGP_C57BL6NJ_T0089960.1 MGP_C57BL6NJ_G0034269.1 mouse_genomes_project 8 75365225 75374934 + Tpm4 protein_coding processed_transcript MGP_C57BL6NJ_T0089961.1 MGP_C57BL6NJ_G0034269.1 mouse_genomes_project 8 75365509 75383881 + MGP_C57BL6NJ_P0089961 Tpm4 protein_coding protein_coding MGP_C57BL6NJ_T0089962.1 MGP_C57BL6NJ_G0034269.1 mouse_genomes_project 8 75365572 75381842 + MGP_C57BL6NJ_P0089962 Tpm4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089982.1 MGP_C57BL6NJ_G0034279.1 mouse_genomes_project 8 75727294 75741946 - MGP_C57BL6NJ_P0089982 Cherp protein_coding protein_coding MGP_C57BL6NJ_T0011238.1 MGP_C57BL6NJ_G0009323.1 mouse_genomes_project 8 88018470 88021260 - miRNA miRNA MGP_C57BL6NJ_T0089044.1 MGP_C57BL6NJ_G0033984.1 mouse_genomes_project 8 25001255 25037705 - MGP_C57BL6NJ_P0089044 Hgsnat protein_coding protein_coding MGP_C57BL6NJ_T0089742.1 MGP_C57BL6NJ_G0034201.1 mouse_genomes_project 8 73394053 73420325 - MGP_C57BL6NJ_P0089742 Klhl26 protein_coding protein_coding MGP_C57BL6NJ_T0089743.1 MGP_C57BL6NJ_G0034201.1 mouse_genomes_project 8 73394053 73420325 - MGP_C57BL6NJ_P0089743 Klhl26 protein_coding protein_coding MGP_C57BL6NJ_T0091163.1 MGP_C57BL6NJ_G0034679.1 mouse_genomes_project 8 127008981 127023426 - MGP_C57BL6NJ_P0091163 Hsdl1 protein_coding protein_coding MGP_C57BL6NJ_T0088626.1 MGP_C57BL6NJ_G0033840.1 mouse_genomes_project 8 7421335 7435784 + MGP_C57BL6NJ_P0088626 Abhd13 protein_coding protein_coding MGP_C57BL6NJ_T0088627.1 MGP_C57BL6NJ_G0033840.1 mouse_genomes_project 8 7421345 7435784 + MGP_C57BL6NJ_P0088627 Abhd13 protein_coding protein_coding MGP_C57BL6NJ_T0098899.1 MGP_C57BL6NJ_G0036963.1 mouse_genomes_project 8 34807632 34808790 + pseudogene pseudogene MGP_C57BL6NJ_T0090807.1 MGP_C57BL6NJ_G0034548.1 mouse_genomes_project 8 111968864 111971803 - MGP_C57BL6NJ_P0090807 Acd protein_coding protein_coding MGP_C57BL6NJ_T0090831.1 MGP_C57BL6NJ_G0034562.1 mouse_genomes_project 8 112232506 112235171 - MGP_C57BL6NJ_P0090831 Psmb10 protein_coding protein_coding MGP_C57BL6NJ_T0005492.1 MGP_C57BL6NJ_G0004653.1 mouse_genomes_project 8 10556821 10561689 - Gm15353 antisense antisense MGP_C57BL6NJ_T0005493.1 MGP_C57BL6NJ_G0004653.1 mouse_genomes_project 8 10556965 10561679 - Gm15353 antisense antisense MGP_C57BL6NJ_T0088965.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23577711 23590986 - MGP_C57BL6NJ_P0088965 Adam3 protein_coding protein_coding MGP_C57BL6NJ_T0088966.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23577718 23633403 - MGP_C57BL6NJ_P0088966 Adam3 protein_coding protein_coding MGP_C57BL6NJ_T0088967.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23577787 23633349 - MGP_C57BL6NJ_P0088967 Adam3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088968.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23582963 23633339 - MGP_C57BL6NJ_P0088968 Adam3 protein_coding protein_coding MGP_C57BL6NJ_T0088969.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23626769 23633351 - Adam3 protein_coding processed_transcript MGP_C57BL6NJ_T0088970.1 MGP_C57BL6NJ_G0033965.1 mouse_genomes_project 8 23626769 23633333 - MGP_C57BL6NJ_P0088970 Adam3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011251.1 MGP_C57BL6NJ_G0009336.1 mouse_genomes_project 8 89298495 89298581 + Mir7070 miRNA miRNA MGP_C57BL6NJ_T0091548.1 MGP_C57BL6NJ_G0034788.1 mouse_genomes_project 8 134745850 134752676 - MGP_C57BL6NJ_P0091548 Irf2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0099563.1 MGP_C57BL6NJ_G0037610.1 mouse_genomes_project 8 10029506 10083667 + Gm5607 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0099564.1 MGP_C57BL6NJ_G0037610.1 mouse_genomes_project 8 10029506 10083688 + Gm5607 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0089862.1 MGP_C57BL6NJ_G0034241.1 mouse_genomes_project 8 74538321 74542202 + MGP_C57BL6NJ_P0089862 Ankle1 protein_coding protein_coding MGP_C57BL6NJ_T0089863.1 MGP_C57BL6NJ_G0034241.1 mouse_genomes_project 8 74538327 74542166 + Ankle1 protein_coding retained_intron MGP_C57BL6NJ_T0089864.1 MGP_C57BL6NJ_G0034241.1 mouse_genomes_project 8 74538333 74541788 + Ankle1 protein_coding retained_intron MGP_C57BL6NJ_T0089865.1 MGP_C57BL6NJ_G0034241.1 mouse_genomes_project 8 74538335 74541795 + MGP_C57BL6NJ_P0089865 Ankle1 protein_coding protein_coding MGP_C57BL6NJ_T0089866.1 MGP_C57BL6NJ_G0034241.1 mouse_genomes_project 8 74540002 74541469 + Ankle1 protein_coding retained_intron MGP_C57BL6NJ_T0089035.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24854659 24882092 - MGP_C57BL6NJ_P0089035 Ash2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089036.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24855005 24882099 - MGP_C57BL6NJ_P0089036 Ash2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089037.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24855535 24882087 - MGP_C57BL6NJ_P0089037 Ash2l protein_coding protein_coding MGP_C57BL6NJ_T0089038.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24860889 24861716 - Ash2l protein_coding retained_intron MGP_C57BL6NJ_T0089039.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24861284 24869715 - Ash2l protein_coding retained_intron MGP_C57BL6NJ_T0089040.1 MGP_C57BL6NJ_G0033982.1 mouse_genomes_project 8 24865141 24869171 - Ash2l protein_coding processed_transcript MGP_C57BL6NJ_T0009301.1 MGP_C57BL6NJ_G0007479.1 mouse_genomes_project 8 70896065 70903288 - lincRNA lincRNA MGP_C57BL6NJ_T0090808.1 MGP_C57BL6NJ_G0034549.1 mouse_genomes_project 8 111971861 111974201 + MGP_C57BL6NJ_P0090808 Pard6a protein_coding protein_coding MGP_C57BL6NJ_T0090809.1 MGP_C57BL6NJ_G0034549.1 mouse_genomes_project 8 111972354 111974200 + MGP_C57BL6NJ_P0090809 Pard6a protein_coding protein_coding MGP_C57BL6NJ_T0011237.1 MGP_C57BL6NJ_G0009322.1 mouse_genomes_project 8 87787675 87787782 - Mir1668 miRNA miRNA MGP_C57BL6NJ_T0089010.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617253 24707023 + MGP_C57BL6NJ_P0089010 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089011.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617936 24704720 + Whsc1l1 protein_coding retained_intron MGP_C57BL6NJ_T0089012.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617936 24707781 + MGP_C57BL6NJ_P0089012 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089013.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617936 24752563 + MGP_C57BL6NJ_P0089013 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089014.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617936 24747866 + MGP_C57BL6NJ_P0089014 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089015.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24617971 24693410 + Whsc1l1 protein_coding retained_intron MGP_C57BL6NJ_T0089016.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24666244 24752563 + MGP_C57BL6NJ_P0089016 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089017.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24704248 24707759 + Whsc1l1 protein_coding retained_intron MGP_C57BL6NJ_T0089018.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24725314 24747866 + MGP_C57BL6NJ_P0089018 Whsc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0089019.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24730720 24741654 + Whsc1l1 protein_coding retained_intron MGP_C57BL6NJ_T0089020.1 MGP_C57BL6NJ_G0033975.1 mouse_genomes_project 8 24732150 24733177 + Whsc1l1 protein_coding retained_intron MGP_C57BL6NJ_T0103557.1 MGP_C57BL6NJ_G0041349.1 mouse_genomes_project 8 18912955 18929141 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0089509.1 MGP_C57BL6NJ_G0034133.1 mouse_genomes_project 8 64342505 64411702 - MGP_C57BL6NJ_P0089509 Anxa10 protein_coding protein_coding MGP_C57BL6NJ_T0089510.1 MGP_C57BL6NJ_G0034133.1 mouse_genomes_project 8 64342984 64411708 - MGP_C57BL6NJ_P0089510 Anxa10 protein_coding protein_coding MGP_C57BL6NJ_T0089794.1 MGP_C57BL6NJ_G0034215.1 mouse_genomes_project 8 73659961 73662838 + MGP_C57BL6NJ_P0089794 Jund protein_coding protein_coding MGP_C57BL6NJ_T0089075.1 MGP_C57BL6NJ_G0033997.1 mouse_genomes_project 8 26397292 26401105 - MGP_C57BL6NJ_P0089075 Adrb3 protein_coding protein_coding MGP_C57BL6NJ_T0089076.1 MGP_C57BL6NJ_G0033997.1 mouse_genomes_project 8 26397517 26400100 - MGP_C57BL6NJ_P0089076 Adrb3 protein_coding protein_coding MGP_C57BL6NJ_T0089077.1 MGP_C57BL6NJ_G0033997.1 mouse_genomes_project 8 26398315 26400011 - MGP_C57BL6NJ_P0089077 Adrb3 protein_coding protein_coding MGP_C57BL6NJ_T0088751.1 MGP_C57BL6NJ_G0033875.1 mouse_genomes_project 8 11190239 11221524 - MGP_C57BL6NJ_P0088751 Gas6 protein_coding protein_coding MGP_C57BL6NJ_T0100677.1 MGP_C57BL6NJ_G0038723.1 mouse_genomes_project 8 122658161 122658265 - Gm23677 snRNA snRNA MGP_C57BL6NJ_T0011288.1 MGP_C57BL6NJ_G0009373.1 mouse_genomes_project 8 130937511 130937580 + Mir7079 miRNA miRNA MGP_C57BL6NJ_T0091505.1 MGP_C57BL6NJ_G0034771.1 mouse_genomes_project 8 132790363 132833786 + MGP_C57BL6NJ_P0091505 Trim67 protein_coding protein_coding MGP_C57BL6NJ_T0091506.1 MGP_C57BL6NJ_G0034771.1 mouse_genomes_project 8 132790436 132833797 + MGP_C57BL6NJ_P0091506 Trim67 protein_coding protein_coding MGP_C57BL6NJ_T0002469.1 MGP_C57BL6NJ_G0002358.1 mouse_genomes_project 8 10998337 11000452 - TEC TEC MGP_C57BL6NJ_T0091579.1 MGP_C57BL6NJ_G0034793.1 mouse_genomes_project 8 136931961 136983308 + MGP_C57BL6NJ_P0091579 Itgb1 protein_coding protein_coding MGP_C57BL6NJ_T0091580.1 MGP_C57BL6NJ_G0034793.1 mouse_genomes_project 8 136932064 136982725 + MGP_C57BL6NJ_P0091580 Itgb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091581.1 MGP_C57BL6NJ_G0034793.1 mouse_genomes_project 8 136932177 136960869 + Itgb1 protein_coding retained_intron MGP_C57BL6NJ_T0091582.1 MGP_C57BL6NJ_G0034793.1 mouse_genomes_project 8 136974440 136982497 + MGP_C57BL6NJ_P0091582 Itgb1 protein_coding protein_coding MGP_C57BL6NJ_T0090338.1 MGP_C57BL6NJ_G0034387.1 mouse_genomes_project 8 89305575 89305990 - MGP_C57BL6NJ_P0090338 Gm5741 protein_coding protein_coding MGP_C57BL6NJ_T0090804.1 MGP_C57BL6NJ_G0034547.1 mouse_genomes_project 8 111956979 111964353 + MGP_C57BL6NJ_P0090804 Rltpr protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090805.1 MGP_C57BL6NJ_G0034547.1 mouse_genomes_project 8 111961611 111968884 + MGP_C57BL6NJ_P0090805 Rltpr protein_coding protein_coding MGP_C57BL6NJ_T0090806.1 MGP_C57BL6NJ_G0034547.1 mouse_genomes_project 8 111964853 111968909 + MGP_C57BL6NJ_P0090806 Rltpr protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088773.1 MGP_C57BL6NJ_G0033883.1 mouse_genomes_project 8 11642969 11643767 + MGP_C57BL6NJ_P0088773 protein_coding protein_coding MGP_C57BL6NJ_T0090448.1 MGP_C57BL6NJ_G0034419.1 mouse_genomes_project 8 93187800 93242752 + MGP_C57BL6NJ_P0090448 Cyld protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090449.1 MGP_C57BL6NJ_G0034419.1 mouse_genomes_project 8 93190617 93242748 + MGP_C57BL6NJ_P0090449 Cyld protein_coding protein_coding MGP_C57BL6NJ_T0016445.1 MGP_C57BL6NJ_G0014490.1 mouse_genomes_project 8 75119210 75120738 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011268.1 MGP_C57BL6NJ_G0009353.1 mouse_genomes_project 8 112248378 112248441 - Mir7074 miRNA miRNA MGP_C57BL6NJ_T0100683.1 MGP_C57BL6NJ_G0038729.1 mouse_genomes_project 8 135226904 135227075 + Gm22730 snRNA snRNA MGP_C57BL6NJ_T0090271.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89062425 89074678 + MGP_C57BL6NJ_P0090271 Farsa protein_coding protein_coding MGP_C57BL6NJ_T0090272.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89062431 89074677 + Farsa protein_coding retained_intron MGP_C57BL6NJ_T0090273.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89062445 89072447 + Farsa protein_coding retained_intron MGP_C57BL6NJ_T0090274.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89062453 89074678 + MGP_C57BL6NJ_P0090274 Farsa protein_coding protein_coding MGP_C57BL6NJ_T0090275.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89062456 89074677 + MGP_C57BL6NJ_P0090275 Farsa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090276.1 MGP_C57BL6NJ_G0034371.1 mouse_genomes_project 8 89072983 89074431 + Farsa protein_coding retained_intron MGP_C57BL6NJ_T0016427.1 MGP_C57BL6NJ_G0014472.1 mouse_genomes_project 8 34083579 34084551 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099522.1 MGP_C57BL6NJ_G0037574.1 mouse_genomes_project 8 70471360 70471750 - sense_intronic sense_intronic MGP_C57BL6NJ_T0016413.1 MGP_C57BL6NJ_G0014458.1 mouse_genomes_project 8 18898339 18898978 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009360.1 MGP_C57BL6NJ_G0007519.1 mouse_genomes_project 8 104791015 104798828 + lincRNA lincRNA MGP_C57BL6NJ_T0005486.1 MGP_C57BL6NJ_G0004648.1 mouse_genomes_project 8 8733397 8751152 + Gm15418 antisense antisense MGP_C57BL6NJ_T0088647.1 MGP_C57BL6NJ_G0033850.1 mouse_genomes_project 8 9198928 9224467 - MGP_C57BL6NJ_P0088647 Ankrd10 protein_coding protein_coding MGP_C57BL6NJ_T0088648.1 MGP_C57BL6NJ_G0033850.1 mouse_genomes_project 8 9201496 9224467 - MGP_C57BL6NJ_P0088648 Ankrd10 protein_coding protein_coding MGP_C57BL6NJ_T0009384.1 MGP_C57BL6NJ_G0007538.1 mouse_genomes_project 8 129060181 129066090 + Gm26747 lincRNA lincRNA MGP_C57BL6NJ_T0090929.1 MGP_C57BL6NJ_G0034596.1 mouse_genomes_project 8 114033918 114044063 - MGP_C57BL6NJ_P0090929 Psmd7 protein_coding protein_coding MGP_C57BL6NJ_T0009382.1 MGP_C57BL6NJ_G0007536.1 mouse_genomes_project 8 128822381 128825503 - lincRNA lincRNA MGP_C57BL6NJ_T0088632.1 MGP_C57BL6NJ_G0033844.1 mouse_genomes_project 8 8745071 8867068 - MGP_C57BL6NJ_P0088632 Col4a1 protein_coding protein_coding MGP_C57BL6NJ_T0088633.1 MGP_C57BL6NJ_G0033844.1 mouse_genomes_project 8 8759050 8763451 - Col4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0016450.1 MGP_C57BL6NJ_G0014495.1 mouse_genomes_project 8 80388927 80389720 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018962.1 MGP_C57BL6NJ_G0016122.1 mouse_genomes_project 8 132830781 132862255 + Gm16163 processed_transcript processed_transcript MGP_C57BL6NJ_T0090708.1 MGP_C57BL6NJ_G0034511.1 mouse_genomes_project 8 110718089 110720216 - MGP_C57BL6NJ_P0090708 Fam96b protein_coding protein_coding MGP_C57BL6NJ_T0090709.1 MGP_C57BL6NJ_G0034511.1 mouse_genomes_project 8 110718091 110719950 - Fam96b protein_coding retained_intron MGP_C57BL6NJ_T0090710.1 MGP_C57BL6NJ_G0034511.1 mouse_genomes_project 8 110718098 110719952 - MGP_C57BL6NJ_P0090710 Fam96b protein_coding protein_coding MGP_C57BL6NJ_T0088781.1 MGP_C57BL6NJ_G0033886.1 mouse_genomes_project 8 11780095 11852232 - MGP_C57BL6NJ_P0088781 Erich1 protein_coding protein_coding MGP_C57BL6NJ_T0091146.1 MGP_C57BL6NJ_G0034674.1 mouse_genomes_project 8 126823995 126840301 + MGP_C57BL6NJ_P0091146 Mlycd protein_coding protein_coding MGP_C57BL6NJ_T0091147.1 MGP_C57BL6NJ_G0034674.1 mouse_genomes_project 8 126824015 126840286 + Mlycd protein_coding retained_intron MGP_C57BL6NJ_T0089834.1 MGP_C57BL6NJ_G0034235.1 mouse_genomes_project 8 74399441 74491866 + MGP_C57BL6NJ_P0089834 Myo9b protein_coding protein_coding MGP_C57BL6NJ_T0089835.1 MGP_C57BL6NJ_G0034235.1 mouse_genomes_project 8 74399441 74491866 + MGP_C57BL6NJ_P0089835 Myo9b protein_coding protein_coding MGP_C57BL6NJ_T0089836.1 MGP_C57BL6NJ_G0034235.1 mouse_genomes_project 8 74399441 74491866 + MGP_C57BL6NJ_P0089836 Myo9b protein_coding protein_coding MGP_C57BL6NJ_T0089837.1 MGP_C57BL6NJ_G0034235.1 mouse_genomes_project 8 74399496 74491871 + MGP_C57BL6NJ_P0089837 Myo9b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0018942.1 MGP_C57BL6NJ_G0016112.1 mouse_genomes_project 8 81199142 81280333 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018943.1 MGP_C57BL6NJ_G0016112.1 mouse_genomes_project 8 81253012 81381775 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018944.1 MGP_C57BL6NJ_G0016112.1 mouse_genomes_project 8 81377163 81381003 + processed_transcript processed_transcript MGP_C57BL6NJ_T0101955.1 MGP_C57BL6NJ_G0040001.1 mouse_genomes_project 8 95703585 95703717 - Gm22428 snoRNA snoRNA MGP_C57BL6NJ_T0090164.1 MGP_C57BL6NJ_G0034341.1 mouse_genomes_project 8 88111310 88113228 + MGP_C57BL6NJ_P0090164 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016411.1 MGP_C57BL6NJ_G0014456.1 mouse_genomes_project 8 17578361 17581041 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090545.1 MGP_C57BL6NJ_G0034452.1 mouse_genomes_project 8 99069641 99070591 + MGP_C57BL6NJ_P0090545 Mt2 protein_coding protein_coding MGP_C57BL6NJ_T0089414.1 MGP_C57BL6NJ_G0034108.1 mouse_genomes_project 8 56274680 56283922 + MGP_C57BL6NJ_P0089414 Spata4 protein_coding protein_coding MGP_C57BL6NJ_T0089373.1 MGP_C57BL6NJ_G0034092.1 mouse_genomes_project 8 48466903 48489160 + MGP_C57BL6NJ_P0089373 Rwdd4a protein_coding protein_coding MGP_C57BL6NJ_T0089374.1 MGP_C57BL6NJ_G0034092.1 mouse_genomes_project 8 48466903 48487614 + MGP_C57BL6NJ_P0089374 Rwdd4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089375.1 MGP_C57BL6NJ_G0034092.1 mouse_genomes_project 8 48466925 48479404 + MGP_C57BL6NJ_P0089375 Rwdd4a protein_coding protein_coding MGP_C57BL6NJ_T0089376.1 MGP_C57BL6NJ_G0034092.1 mouse_genomes_project 8 48484242 48487625 + Rwdd4a protein_coding processed_transcript MGP_C57BL6NJ_T0089377.1 MGP_C57BL6NJ_G0034092.1 mouse_genomes_project 8 48486792 48489290 + Rwdd4a protein_coding retained_intron MGP_C57BL6NJ_T0088644.1 MGP_C57BL6NJ_G0033848.1 mouse_genomes_project 8 9076515 9115006 - MGP_C57BL6NJ_P0088644 Cars2 protein_coding protein_coding MGP_C57BL6NJ_T0088645.1 MGP_C57BL6NJ_G0033848.1 mouse_genomes_project 8 9076517 9114912 - MGP_C57BL6NJ_P0088645 Cars2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016430.1 MGP_C57BL6NJ_G0014475.1 mouse_genomes_project 8 36337415 36338459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090569.1 MGP_C57BL6NJ_G0034460.1 mouse_genomes_project 8 99530604 99592312 + MGP_C57BL6NJ_P0090569 Rspry1 protein_coding protein_coding MGP_C57BL6NJ_T0090570.1 MGP_C57BL6NJ_G0034460.1 mouse_genomes_project 8 99530627 99556348 + MGP_C57BL6NJ_P0090570 Rspry1 protein_coding protein_coding MGP_C57BL6NJ_T0090571.1 MGP_C57BL6NJ_G0034460.1 mouse_genomes_project 8 99559469 99563038 + Rspry1 protein_coding retained_intron MGP_C57BL6NJ_T0011982.1 MGP_C57BL6NJ_G0010067.1 mouse_genomes_project 8 46903883 46904156 + Gm23030 misc_RNA misc_RNA MGP_C57BL6NJ_T0090641.1 MGP_C57BL6NJ_G0034486.1 mouse_genomes_project 8 100691209 100706095 + MGP_C57BL6NJ_P0090641 Gins3 protein_coding protein_coding MGP_C57BL6NJ_T0099168.1 MGP_C57BL6NJ_G0037232.1 mouse_genomes_project 8 75340882 75340969 + Gm24747 rRNA rRNA MGP_C57BL6NJ_T0089065.1 MGP_C57BL6NJ_G0033992.1 mouse_genomes_project 8 26202281 26215858 + MGP_C57BL6NJ_P0089065 Prosc protein_coding protein_coding MGP_C57BL6NJ_T0089066.1 MGP_C57BL6NJ_G0033992.1 mouse_genomes_project 8 26202281 26209967 + MGP_C57BL6NJ_P0089066 Prosc protein_coding protein_coding MGP_C57BL6NJ_T0090529.1 MGP_C57BL6NJ_G0034446.1 mouse_genomes_project 8 98847042 98891772 - MGP_C57BL6NJ_P0090529 Amfr protein_coding protein_coding MGP_C57BL6NJ_T0090530.1 MGP_C57BL6NJ_G0034446.1 mouse_genomes_project 8 98848356 98850371 - Amfr protein_coding retained_intron MGP_C57BL6NJ_T0090531.1 MGP_C57BL6NJ_G0034446.1 mouse_genomes_project 8 98848412 98849416 - Amfr protein_coding processed_transcript MGP_C57BL6NJ_T0090532.1 MGP_C57BL6NJ_G0034446.1 mouse_genomes_project 8 98876422 98891236 - MGP_C57BL6NJ_P0090532 Amfr protein_coding protein_coding MGP_C57BL6NJ_T0089078.1 MGP_C57BL6NJ_G0033998.1 mouse_genomes_project 8 26431756 26448223 + MGP_C57BL6NJ_P0089078 Eif4ebp1 protein_coding protein_coding MGP_C57BL6NJ_T0089731.1 MGP_C57BL6NJ_G0034197.1 mouse_genomes_project 8 73250814 73266665 + MGP_C57BL6NJ_P0089731 Gdf1 protein_coding protein_coding MGP_C57BL6NJ_T0089732.1 MGP_C57BL6NJ_G0034197.1 mouse_genomes_project 8 73250814 73266670 + MGP_C57BL6NJ_P0089732 Gdf1 protein_coding protein_coding MGP_C57BL6NJ_T0089733.1 MGP_C57BL6NJ_G0034197.1 mouse_genomes_project 8 73253389 73257729 + Gdf1 protein_coding retained_intron MGP_C57BL6NJ_T0090257.1 MGP_C57BL6NJ_G0034366.1 mouse_genomes_project 8 89020350 89027795 - MGP_C57BL6NJ_P0090257 Dand5 protein_coding protein_coding MGP_C57BL6NJ_T0091232.1 MGP_C57BL6NJ_G0034699.1 mouse_genomes_project 8 128235492 128237053 + Cox4i1 protein_coding retained_intron MGP_C57BL6NJ_T0091233.1 MGP_C57BL6NJ_G0034699.1 mouse_genomes_project 8 128235514 128241445 + MGP_C57BL6NJ_P0091233 Cox4i1 protein_coding protein_coding MGP_C57BL6NJ_T0091234.1 MGP_C57BL6NJ_G0034699.1 mouse_genomes_project 8 128235567 128241277 + MGP_C57BL6NJ_P0091234 Cox4i1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091235.1 MGP_C57BL6NJ_G0034699.1 mouse_genomes_project 8 128239821 128241345 + Cox4i1 protein_coding retained_intron MGP_C57BL6NJ_T0091236.1 MGP_C57BL6NJ_G0034699.1 mouse_genomes_project 8 128240383 128241439 + Cox4i1 protein_coding retained_intron MGP_C57BL6NJ_T0101950.1 MGP_C57BL6NJ_G0039996.1 mouse_genomes_project 8 88545202 88545335 - Gm23626 snoRNA snoRNA MGP_C57BL6NJ_T0090683.1 MGP_C57BL6NJ_G0034500.1 mouse_genomes_project 8 110355543 110355764 + MGP_C57BL6NJ_P0090683 Gm11020 protein_coding protein_coding MGP_C57BL6NJ_T0088890.1 MGP_C57BL6NJ_G0033939.1 mouse_genomes_project 8 20886182 20917379 + MGP_C57BL6NJ_P0088890 Vps36 protein_coding protein_coding MGP_C57BL6NJ_T0088891.1 MGP_C57BL6NJ_G0033939.1 mouse_genomes_project 8 20886215 20902793 + Vps36 protein_coding processed_transcript MGP_C57BL6NJ_T0088892.1 MGP_C57BL6NJ_G0033939.1 mouse_genomes_project 8 20913528 20915168 + Vps36 protein_coding retained_intron MGP_C57BL6NJ_T0011271.1 MGP_C57BL6NJ_G0009356.1 mouse_genomes_project 8 115444395 115444474 + Mir3108 miRNA miRNA MGP_C57BL6NJ_T0090779.1 MGP_C57BL6NJ_G0034538.1 mouse_genomes_project 8 111602046 111636426 - MGP_C57BL6NJ_P0090779 Kctd19 protein_coding protein_coding MGP_C57BL6NJ_T0090780.1 MGP_C57BL6NJ_G0034538.1 mouse_genomes_project 8 111602046 111636426 - MGP_C57BL6NJ_P0090780 Kctd19 protein_coding protein_coding MGP_C57BL6NJ_T0090781.1 MGP_C57BL6NJ_G0034538.1 mouse_genomes_project 8 111602181 111606568 - MGP_C57BL6NJ_P0090781 Kctd19 protein_coding protein_coding MGP_C57BL6NJ_T0090782.1 MGP_C57BL6NJ_G0034538.1 mouse_genomes_project 8 111614976 111636380 - MGP_C57BL6NJ_P0090782 Kctd19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005559.1 MGP_C57BL6NJ_G0004707.1 mouse_genomes_project 8 129200987 129202347 + Gm27045 antisense antisense MGP_C57BL6NJ_T0009345.1 MGP_C57BL6NJ_G0007512.1 mouse_genomes_project 8 96734143 96751239 + Gm28516 lincRNA lincRNA MGP_C57BL6NJ_T0091357.1 MGP_C57BL6NJ_G0034728.1 mouse_genomes_project 8 130390617 130393886 - MGP_C57BL6NJ_P0091357 Pabpn1l protein_coding protein_coding MGP_C57BL6NJ_T0091329.1 MGP_C57BL6NJ_G0034719.1 mouse_genomes_project 8 130155834 130185654 - MGP_C57BL6NJ_P0091329 Mvd protein_coding protein_coding MGP_C57BL6NJ_T0100680.1 MGP_C57BL6NJ_G0038726.1 mouse_genomes_project 8 130278429 130278536 - Gm26497 snRNA snRNA MGP_C57BL6NJ_T0090568.1 MGP_C57BL6NJ_G0034459.1 mouse_genomes_project 8 99502888 99530376 - MGP_C57BL6NJ_P0090568 Fam192a protein_coding protein_coding MGP_C57BL6NJ_T0089868.1 MGP_C57BL6NJ_G0034243.1 mouse_genomes_project 8 74603806 74604633 + MGP_C57BL6NJ_P0089868 Mrpl34 protein_coding protein_coding MGP_C57BL6NJ_T0009282.1 MGP_C57BL6NJ_G0007462.1 mouse_genomes_project 8 33755137 33764922 + Gm9951 lincRNA lincRNA MGP_C57BL6NJ_T0009283.1 MGP_C57BL6NJ_G0007462.1 mouse_genomes_project 8 33763701 33766126 + Gm9951 lincRNA lincRNA MGP_C57BL6NJ_T0090722.1 MGP_C57BL6NJ_G0034517.1 mouse_genomes_project 8 111117117 111126596 + MGP_C57BL6NJ_P0090722 Ces2g protein_coding protein_coding MGP_C57BL6NJ_T0090961.1 MGP_C57BL6NJ_G0034609.1 mouse_genomes_project 8 116538368 116555288 - MGP_C57BL6NJ_P0090961 Marveld3 protein_coding protein_coding MGP_C57BL6NJ_T0090962.1 MGP_C57BL6NJ_G0034609.1 mouse_genomes_project 8 116543339 116555323 - MGP_C57BL6NJ_P0090962 Marveld3 protein_coding protein_coding MGP_C57BL6NJ_T0090963.1 MGP_C57BL6NJ_G0034609.1 mouse_genomes_project 8 116552744 116555173 - Marveld3 protein_coding retained_intron MGP_C57BL6NJ_T0016479.1 MGP_C57BL6NJ_G0014524.1 mouse_genomes_project 8 129249167 129249619 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011277.1 MGP_C57BL6NJ_G0009362.1 mouse_genomes_project 8 118227100 118227223 + Mir1957b miRNA miRNA MGP_C57BL6NJ_T0088922.1 MGP_C57BL6NJ_G0033952.1 mouse_genomes_project 8 21602191 21695130 + MGP_C57BL6NJ_P0088922 Kat6a protein_coding protein_coding MGP_C57BL6NJ_T0088923.1 MGP_C57BL6NJ_G0033952.1 mouse_genomes_project 8 21602205 21695130 + MGP_C57BL6NJ_P0088923 Kat6a protein_coding protein_coding MGP_C57BL6NJ_T0088924.1 MGP_C57BL6NJ_G0033952.1 mouse_genomes_project 8 21661789 21671596 + Kat6a protein_coding processed_transcript MGP_C57BL6NJ_T0090575.1 MGP_C57BL6NJ_G0034463.1 mouse_genomes_project 8 99683491 99689583 + MGP_C57BL6NJ_P0090575 Ccl22 protein_coding protein_coding MGP_C57BL6NJ_T0090576.1 MGP_C57BL6NJ_G0034463.1 mouse_genomes_project 8 99683581 99687757 + Ccl22 protein_coding processed_transcript MGP_C57BL6NJ_T0090150.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 87984414 88031699 + MGP_C57BL6NJ_P0090150 Adgrl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090151.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 87985970 88033639 + MGP_C57BL6NJ_P0090151 Adgrl1 protein_coding protein_coding MGP_C57BL6NJ_T0090152.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 87985998 88031699 + MGP_C57BL6NJ_P0090152 Adgrl1 protein_coding protein_coding MGP_C57BL6NJ_T0090153.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 87986018 88031675 + MGP_C57BL6NJ_P0090153 Adgrl1 protein_coding protein_coding MGP_C57BL6NJ_T0090154.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 87986018 88031675 + MGP_C57BL6NJ_P0090154 Adgrl1 protein_coding protein_coding MGP_C57BL6NJ_T0090155.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 88012119 88021756 + Adgrl1 protein_coding processed_transcript MGP_C57BL6NJ_T0090157.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 88026280 88029184 + Adgrl1 protein_coding retained_intron MGP_C57BL6NJ_T0090158.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 88027842 88029516 + Adgrl1 protein_coding retained_intron MGP_C57BL6NJ_T0090159.1 MGP_C57BL6NJ_G0034337.1 mouse_genomes_project 8 88029342 88030553 + MGP_C57BL6NJ_P0090159 Adgrl1 protein_coding protein_coding MGP_C57BL6NJ_T0090844.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112287715 112319398 + MGP_C57BL6NJ_P0090844 Dus2 protein_coding protein_coding MGP_C57BL6NJ_T0090846.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112309250 112358435 + MGP_C57BL6NJ_P0090846 Dus2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090847.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112309250 112358414 + MGP_C57BL6NJ_P0090847 Dus2 protein_coding protein_coding MGP_C57BL6NJ_T0090848.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112309265 112336251 + Dus2 protein_coding retained_intron MGP_C57BL6NJ_T0090849.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112338383 112350864 + Dus2 protein_coding retained_intron MGP_C57BL6NJ_T0090850.1 MGP_C57BL6NJ_G0034567.1 mouse_genomes_project 8 112353302 112356794 + Dus2 protein_coding retained_intron MGP_C57BL6NJ_T0090798.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111900823 111950670 + Ctcf protein_coding processed_transcript MGP_C57BL6NJ_T0090799.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111900834 111951945 + MGP_C57BL6NJ_P0090799 Ctcf protein_coding protein_coding MGP_C57BL6NJ_T0090800.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111901190 111931439 + Ctcf protein_coding processed_transcript MGP_C57BL6NJ_T0090801.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111901321 111931156 + Ctcf protein_coding processed_transcript MGP_C57BL6NJ_T0090802.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111943250 111949640 + Ctcf protein_coding retained_intron MGP_C57BL6NJ_T0090803.1 MGP_C57BL6NJ_G0034546.1 mouse_genomes_project 8 111943250 111946807 + Ctcf protein_coding processed_transcript MGP_C57BL6NJ_T0090488.1 MGP_C57BL6NJ_G0034432.1 mouse_genomes_project 8 97609423 97637355 + MGP_C57BL6NJ_P0090488 Mmp2 protein_coding protein_coding MGP_C57BL6NJ_T0089082.1 MGP_C57BL6NJ_G0034001.1 mouse_genomes_project 8 26646758 26657411 - MGP_C57BL6NJ_P0089082 Chrna6 protein_coding protein_coding MGP_C57BL6NJ_T0098902.1 MGP_C57BL6NJ_G0036966.1 mouse_genomes_project 8 92559807 92560246 - pseudogene pseudogene MGP_C57BL6NJ_T0011224.1 MGP_C57BL6NJ_G0009309.1 mouse_genomes_project 8 48527802 48527882 + Gm27409 miRNA miRNA MGP_C57BL6NJ_T0091544.1 MGP_C57BL6NJ_G0034784.1 mouse_genomes_project 8 134103127 134140358 + MGP_C57BL6NJ_P0091544 Kcnk1 protein_coding protein_coding MGP_C57BL6NJ_T0091133.1 MGP_C57BL6NJ_G0034669.1 mouse_genomes_project 8 124931647 124941778 - MGP_C57BL6NJ_P0091133 Sdr42e1 protein_coding protein_coding MGP_C57BL6NJ_T0091134.1 MGP_C57BL6NJ_G0034669.1 mouse_genomes_project 8 124931650 124943920 - MGP_C57BL6NJ_P0091134 Sdr42e1 protein_coding protein_coding MGP_C57BL6NJ_T0091135.1 MGP_C57BL6NJ_G0034669.1 mouse_genomes_project 8 124933581 124943920 - MGP_C57BL6NJ_P0091135 Sdr42e1 protein_coding protein_coding MGP_C57BL6NJ_T0005518.1 MGP_C57BL6NJ_G0004672.1 mouse_genomes_project 8 56241424 56274887 - 5330439A09Rik antisense antisense MGP_C57BL6NJ_T0009383.1 MGP_C57BL6NJ_G0007537.1 mouse_genomes_project 8 128886664 128994965 - Gm26815 lincRNA lincRNA MGP_C57BL6NJ_T0088649.1 MGP_C57BL6NJ_G0033851.1 mouse_genomes_project 8 9245477 9270832 - MGP_C57BL6NJ_P0088649 1700016D06Rik protein_coding protein_coding MGP_C57BL6NJ_T0088650.1 MGP_C57BL6NJ_G0033851.1 mouse_genomes_project 8 9246031 9251273 - 1700016D06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0088651.1 MGP_C57BL6NJ_G0033851.1 mouse_genomes_project 8 9246032 9296976 - MGP_C57BL6NJ_P0088651 1700016D06Rik protein_coding protein_coding MGP_C57BL6NJ_T0088652.1 MGP_C57BL6NJ_G0033851.1 mouse_genomes_project 8 9246033 9253142 - MGP_C57BL6NJ_P0088652 1700016D06Rik protein_coding protein_coding MGP_C57BL6NJ_T0091033.1 MGP_C57BL6NJ_G0034632.1 mouse_genomes_project 8 118075027 118101214 - MGP_C57BL6NJ_P0091033 Mlkl protein_coding protein_coding MGP_C57BL6NJ_T0091034.1 MGP_C57BL6NJ_G0034632.1 mouse_genomes_project 8 118075030 118101214 - MGP_C57BL6NJ_P0091034 Mlkl protein_coding protein_coding MGP_C57BL6NJ_T0091035.1 MGP_C57BL6NJ_G0034632.1 mouse_genomes_project 8 118075032 118079215 - Mlkl protein_coding processed_transcript MGP_C57BL6NJ_T0091036.1 MGP_C57BL6NJ_G0034632.1 mouse_genomes_project 8 118094857 118100830 - MGP_C57BL6NJ_P0091036 Mlkl protein_coding protein_coding MGP_C57BL6NJ_T0088983.1 MGP_C57BL6NJ_G0033968.1 mouse_genomes_project 8 23885504 23958182 - MGP_C57BL6NJ_P0088983 Adam9 protein_coding protein_coding MGP_C57BL6NJ_T0009310.1 MGP_C57BL6NJ_G0007487.1 mouse_genomes_project 8 84824088 84829222 - Gm27048 lincRNA lincRNA MGP_C57BL6NJ_T0011984.1 MGP_C57BL6NJ_G0010069.1 mouse_genomes_project 8 67849148 67849291 + Gm25403 misc_RNA misc_RNA MGP_C57BL6NJ_T0089819.1 MGP_C57BL6NJ_G0034227.1 mouse_genomes_project 8 73852253 73854555 + MGP_C57BL6NJ_P0089819 protein_coding protein_coding MGP_C57BL6NJ_T0090772.1 MGP_C57BL6NJ_G0034536.1 mouse_genomes_project 8 111567233 111589152 + MGP_C57BL6NJ_P0090772 Slc9a5 protein_coding protein_coding MGP_C57BL6NJ_T0089555.1 MGP_C57BL6NJ_G0034150.1 mouse_genomes_project 8 69445255 69476676 + MGP_C57BL6NJ_P0089555 Naf1 protein_coding protein_coding MGP_C57BL6NJ_T0016482.1 MGP_C57BL6NJ_G0014527.1 mouse_genomes_project 8 135762965 135763400 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091543.1 MGP_C57BL6NJ_G0034783.1 mouse_genomes_project 8 134014583 134051494 + MGP_C57BL6NJ_P0091543 BC021891 protein_coding protein_coding MGP_C57BL6NJ_T0088842.1 MGP_C57BL6NJ_G0033903.1 mouse_genomes_project 8 17065237 17074225 - MGP_C57BL6NJ_P0088842 Defb39 protein_coding protein_coding MGP_C57BL6NJ_T0002471.1 MGP_C57BL6NJ_G0002360.1 mouse_genomes_project 8 21976784 21977635 + TEC TEC MGP_C57BL6NJ_T0089177.1 MGP_C57BL6NJ_G0034038.1 mouse_genomes_project 8 36999095 37006000 + MGP_C57BL6NJ_P0089177 AI429214 protein_coding protein_coding MGP_C57BL6NJ_T0011976.1 MGP_C57BL6NJ_G0010061.1 mouse_genomes_project 8 9292527 9292771 - Gm27854 misc_RNA misc_RNA MGP_C57BL6NJ_T0005563.1 MGP_C57BL6NJ_G0004710.1 mouse_genomes_project 8 129656813 129657785 - Gm27011 antisense antisense MGP_C57BL6NJ_T0091110.1 MGP_C57BL6NJ_G0034658.1 mouse_genomes_project 8 123726139 123906349 - MGP_C57BL6NJ_P0091110 Cdyl2 protein_coding protein_coding MGP_C57BL6NJ_T0089411.1 MGP_C57BL6NJ_G0034105.1 mouse_genomes_project 8 55729289 55841166 + MGP_C57BL6NJ_P0089411 Vegfc protein_coding protein_coding MGP_C57BL6NJ_T0091460.1 MGP_C57BL6NJ_G0034753.1 mouse_genomes_project 8 131549202 131551259 + Rhou protein_coding retained_intron MGP_C57BL6NJ_T0091461.1 MGP_C57BL6NJ_G0034753.1 mouse_genomes_project 8 131549202 131559183 + MGP_C57BL6NJ_P0091461 Rhou protein_coding protein_coding MGP_C57BL6NJ_T0090724.1 MGP_C57BL6NJ_G0034519.1 mouse_genomes_project 8 111182919 111196040 + MGP_C57BL6NJ_P0090724 Ces3b protein_coding protein_coding MGP_C57BL6NJ_T0090725.1 MGP_C57BL6NJ_G0034519.1 mouse_genomes_project 8 111182919 111196040 + MGP_C57BL6NJ_P0090725 Ces3b protein_coding protein_coding MGP_C57BL6NJ_T0011293.1 MGP_C57BL6NJ_G0009378.1 mouse_genomes_project 8 136586339 136586419 + Mir1903 miRNA miRNA MGP_C57BL6NJ_T0005553.1 MGP_C57BL6NJ_G0004701.1 mouse_genomes_project 8 121595540 121599133 - Gm16116 antisense antisense MGP_C57BL6NJ_T0089653.1 MGP_C57BL6NJ_G0034181.1 mouse_genomes_project 8 72920888 72947440 - MGP_C57BL6NJ_P0089653 Mau2 protein_coding protein_coding MGP_C57BL6NJ_T0089654.1 MGP_C57BL6NJ_G0034181.1 mouse_genomes_project 8 72920888 72947489 - MGP_C57BL6NJ_P0089654 Mau2 protein_coding protein_coding MGP_C57BL6NJ_T0091007.1 MGP_C57BL6NJ_G0034625.1 mouse_genomes_project 8 117672489 117697996 - MGP_C57BL6NJ_P0091007 Ddx19a protein_coding protein_coding MGP_C57BL6NJ_T0091008.1 MGP_C57BL6NJ_G0034625.1 mouse_genomes_project 8 117675148 117677512 - Ddx19a protein_coding retained_intron MGP_C57BL6NJ_T0091009.1 MGP_C57BL6NJ_G0034625.1 mouse_genomes_project 8 117677350 117698043 - Ddx19a protein_coding retained_intron MGP_C57BL6NJ_T0089662.1 MGP_C57BL6NJ_G0034185.1 mouse_genomes_project 8 72998374 73027711 - MGP_C57BL6NJ_P0089662 Ncan protein_coding protein_coding MGP_C57BL6NJ_T0090493.1 MGP_C57BL6NJ_G0034435.1 mouse_genomes_project 8 97748194 97789612 + MGP_C57BL6NJ_P0090493 Slc6a2 protein_coding protein_coding MGP_C57BL6NJ_T0090494.1 MGP_C57BL6NJ_G0034435.1 mouse_genomes_project 8 97749162 97792355 + MGP_C57BL6NJ_P0090494 Slc6a2 protein_coding protein_coding MGP_C57BL6NJ_T0090005.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78366440 78407728 + MGP_C57BL6NJ_P0090005 Hmgxb4 protein_coding protein_coding MGP_C57BL6NJ_T0090006.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78366763 78372883 + Hmgxb4 protein_coding processed_transcript MGP_C57BL6NJ_T0090007.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78366763 78407734 + MGP_C57BL6NJ_P0090007 Hmgxb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090008.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78366775 78372305 + Hmgxb4 protein_coding processed_transcript MGP_C57BL6NJ_T0090009.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78366796 78373869 + Hmgxb4 protein_coding retained_intron MGP_C57BL6NJ_T0090010.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78391977 78407669 + MGP_C57BL6NJ_P0090010 Hmgxb4 protein_coding protein_coding MGP_C57BL6NJ_T0090011.1 MGP_C57BL6NJ_G0034289.1 mouse_genomes_project 8 78398610 78399832 + Hmgxb4 protein_coding retained_intron MGP_C57BL6NJ_T0089334.1 MGP_C57BL6NJ_G0034081.1 mouse_genomes_project 8 47005540 47010028 - MGP_C57BL6NJ_P0089334 Slc25a4 protein_coding protein_coding MGP_C57BL6NJ_T0089335.1 MGP_C57BL6NJ_G0034081.1 mouse_genomes_project 8 47006713 47009774 - Slc25a4 protein_coding retained_intron MGP_C57BL6NJ_T0089405.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55178524 55234770 - MGP_C57BL6NJ_P0089405 Neil3 protein_coding protein_coding MGP_C57BL6NJ_T0089406.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55197972 55205665 - Neil3 protein_coding processed_transcript MGP_C57BL6NJ_T0089407.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55197972 55205719 - MGP_C57BL6NJ_P0089407 Neil3 protein_coding protein_coding MGP_C57BL6NJ_T0089408.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55197998 55206800 - MGP_C57BL6NJ_P0089408 Neil3 protein_coding protein_coding MGP_C57BL6NJ_T0089409.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55198703 55234671 - Neil3 protein_coding retained_intron MGP_C57BL6NJ_T0089410.1 MGP_C57BL6NJ_G0034104.1 mouse_genomes_project 8 55203743 55234383 - MGP_C57BL6NJ_P0089410 Neil3 protein_coding protein_coding MGP_C57BL6NJ_T0089823.1 MGP_C57BL6NJ_G0034231.1 mouse_genomes_project 8 73901222 73913095 + MGP_C57BL6NJ_P0089823 Map1s protein_coding protein_coding MGP_C57BL6NJ_T0005506.1 MGP_C57BL6NJ_G0004662.1 mouse_genomes_project 8 21899624 21910374 - Gm15816 antisense antisense MGP_C57BL6NJ_T0090422.1 MGP_C57BL6NJ_G0034412.1 mouse_genomes_project 8 92559748 92601980 + MGP_C57BL6NJ_P0090422 Heatr3 protein_coding protein_coding MGP_C57BL6NJ_T0090423.1 MGP_C57BL6NJ_G0034412.1 mouse_genomes_project 8 92581182 92582863 + Heatr3 protein_coding retained_intron MGP_C57BL6NJ_T0090424.1 MGP_C57BL6NJ_G0034412.1 mouse_genomes_project 8 92585707 92601973 + Heatr3 protein_coding retained_intron MGP_C57BL6NJ_T0090425.1 MGP_C57BL6NJ_G0034412.1 mouse_genomes_project 8 92588671 92591194 + Heatr3 protein_coding retained_intron MGP_C57BL6NJ_T0016448.1 MGP_C57BL6NJ_G0014493.1 mouse_genomes_project 8 78768876 78769608 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088897.1 MGP_C57BL6NJ_G0033942.1 mouse_genomes_project 8 21084664 21107720 - MGP_C57BL6NJ_P0088897 Slc25a15 protein_coding protein_coding MGP_C57BL6NJ_T0089805.1 MGP_C57BL6NJ_G0034220.1 mouse_genomes_project 8 73739004 73741277 - MGP_C57BL6NJ_P0089805 Mpv17l2 protein_coding protein_coding MGP_C57BL6NJ_T0090174.1 MGP_C57BL6NJ_G0034344.1 mouse_genomes_project 8 88143621 88151337 + Palm3 protein_coding retained_intron MGP_C57BL6NJ_T0090175.1 MGP_C57BL6NJ_G0034344.1 mouse_genomes_project 8 88143621 88152444 + MGP_C57BL6NJ_P0090175 Palm3 protein_coding protein_coding MGP_C57BL6NJ_T0090176.1 MGP_C57BL6NJ_G0034344.1 mouse_genomes_project 8 88148223 88149198 + Palm3 protein_coding retained_intron MGP_C57BL6NJ_T0101928.1 MGP_C57BL6NJ_G0039974.1 mouse_genomes_project 8 43879579 43879709 + Gm22986 snoRNA snoRNA MGP_C57BL6NJ_T0101935.1 MGP_C57BL6NJ_G0039981.1 mouse_genomes_project 8 59498210 59498324 + Gm25379 snoRNA snoRNA MGP_C57BL6NJ_T0089047.1 MGP_C57BL6NJ_G0033987.1 mouse_genomes_project 8 25090133 25193964 - MGP_C57BL6NJ_P0089047 Hook3 protein_coding protein_coding MGP_C57BL6NJ_T0089048.1 MGP_C57BL6NJ_G0033987.1 mouse_genomes_project 8 25106792 25142404 - MGP_C57BL6NJ_P0089048 Hook3 protein_coding protein_coding MGP_C57BL6NJ_T0089049.1 MGP_C57BL6NJ_G0033987.1 mouse_genomes_project 8 25106801 25113588 - Hook3 protein_coding retained_intron MGP_C57BL6NJ_T0090182.1 MGP_C57BL6NJ_G0034350.1 mouse_genomes_project 8 88227608 88235307 - MGP_C57BL6NJ_P0090182 Dcaf15 protein_coding protein_coding MGP_C57BL6NJ_T0090183.1 MGP_C57BL6NJ_G0034350.1 mouse_genomes_project 8 88227986 88235282 - MGP_C57BL6NJ_P0090183 Dcaf15 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099170.1 MGP_C57BL6NJ_G0037234.1 mouse_genomes_project 8 122081525 122081625 - Gm22556 rRNA rRNA MGP_C57BL6NJ_T0005498.1 MGP_C57BL6NJ_G0004656.1 mouse_genomes_project 8 12757122 12757643 - Gm16350 antisense antisense MGP_C57BL6NJ_T0089107.1 MGP_C57BL6NJ_G0034015.1 mouse_genomes_project 8 33200961 33247189 + MGP_C57BL6NJ_P0089107 Tex15 protein_coding protein_coding MGP_C57BL6NJ_T0089108.1 MGP_C57BL6NJ_G0034015.1 mouse_genomes_project 8 33203445 33275483 + MGP_C57BL6NJ_P0089108 Tex15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089109.1 MGP_C57BL6NJ_G0034015.1 mouse_genomes_project 8 33203445 33263425 + MGP_C57BL6NJ_P0089109 Tex15 protein_coding protein_coding MGP_C57BL6NJ_T0089110.1 MGP_C57BL6NJ_G0034015.1 mouse_genomes_project 8 33260410 33275483 + MGP_C57BL6NJ_P0089110 Tex15 protein_coding protein_coding MGP_C57BL6NJ_T0089619.1 MGP_C57BL6NJ_G0034170.1 mouse_genomes_project 8 72611948 72648378 - MGP_C57BL6NJ_P0089619 Gm20422 protein_coding protein_coding MGP_C57BL6NJ_T0089621.1 MGP_C57BL6NJ_G0034170.1 mouse_genomes_project 8 72612270 72638102 - MGP_C57BL6NJ_P0089621 Gm20422 protein_coding protein_coding MGP_C57BL6NJ_T0091010.1 MGP_C57BL6NJ_G0034626.1 mouse_genomes_project 8 117708596 117741552 - MGP_C57BL6NJ_P0091010 Ddx19b protein_coding protein_coding MGP_C57BL6NJ_T0091179.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127388844 127438446 + MGP_C57BL6NJ_P0091179 Usp10 protein_coding protein_coding MGP_C57BL6NJ_T0091180.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127389298 127438451 + MGP_C57BL6NJ_P0091180 Usp10 protein_coding protein_coding MGP_C57BL6NJ_T0091181.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127389317 127433518 + Usp10 protein_coding processed_transcript MGP_C57BL6NJ_T0091182.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127389341 127432825 + MGP_C57BL6NJ_P0091182 Usp10 protein_coding protein_coding MGP_C57BL6NJ_T0091183.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127422500 127427141 + Usp10 protein_coding processed_transcript MGP_C57BL6NJ_T0091184.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127426725 127434182 + Usp10 protein_coding retained_intron MGP_C57BL6NJ_T0091185.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127426836 127433294 + Usp10 protein_coding retained_intron MGP_C57BL6NJ_T0091186.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127432853 127436208 + Usp10 protein_coding retained_intron MGP_C57BL6NJ_T0091187.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127433542 127435702 + Usp10 protein_coding retained_intron MGP_C57BL6NJ_T0091188.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127434165 127437760 + MGP_C57BL6NJ_P0091188 Usp10 protein_coding protein_coding MGP_C57BL6NJ_T0091189.1 MGP_C57BL6NJ_G0034689.1 mouse_genomes_project 8 127437096 127438448 + Usp10 protein_coding processed_transcript MGP_C57BL6NJ_T0016400.1 MGP_C57BL6NJ_G0014445.1 mouse_genomes_project 8 1109320 1111706 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091438.1 MGP_C57BL6NJ_G0034746.1 mouse_genomes_project 8 131233506 131263431 + MGP_C57BL6NJ_P0091438 Tcf25 protein_coding protein_coding MGP_C57BL6NJ_T0091439.1 MGP_C57BL6NJ_G0034746.1 mouse_genomes_project 8 131233517 131265712 + MGP_C57BL6NJ_P0091439 Tcf25 protein_coding protein_coding MGP_C57BL6NJ_T0005538.1 MGP_C57BL6NJ_G0004689.1 mouse_genomes_project 8 104359169 104381646 + Gm15679 antisense antisense MGP_C57BL6NJ_T0090657.1 MGP_C57BL6NJ_G0034489.1 mouse_genomes_project 8 100791697 100893448 - MGP_C57BL6NJ_P0090657 Cnot1 protein_coding protein_coding MGP_C57BL6NJ_T0090658.1 MGP_C57BL6NJ_G0034489.1 mouse_genomes_project 8 100791697 100893448 - MGP_C57BL6NJ_P0090658 Cnot1 protein_coding protein_coding MGP_C57BL6NJ_T0088488.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 451303 468328 + MGP_C57BL6NJ_P0088488 Mcoln1 protein_coding protein_coding MGP_C57BL6NJ_T0088489.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 451350 460039 + MGP_C57BL6NJ_P0088489 Mcoln1 protein_coding protein_coding MGP_C57BL6NJ_T0088490.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 458876 468328 + Mcoln1 protein_coding retained_intron MGP_C57BL6NJ_T0088491.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 463764 466118 + Mcoln1 protein_coding retained_intron MGP_C57BL6NJ_T0088492.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 464693 465903 + Mcoln1 protein_coding retained_intron MGP_C57BL6NJ_T0088493.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 465777 468320 + Mcoln1 protein_coding retained_intron MGP_C57BL6NJ_T0088494.1 MGP_C57BL6NJ_G0033798.1 mouse_genomes_project 8 467657 468328 + Mcoln1 protein_coding retained_intron MGP_C57BL6NJ_T0101917.1 MGP_C57BL6NJ_G0039963.1 mouse_genomes_project 8 16596845 16596974 - Gm25763 snoRNA snoRNA MGP_C57BL6NJ_T0089617.1 MGP_C57BL6NJ_G0034168.1 mouse_genomes_project 8 72569360 72573753 - MGP_C57BL6NJ_P0089617 Zfp869 protein_coding protein_coding MGP_C57BL6NJ_T0090074.1 MGP_C57BL6NJ_G0034311.1 mouse_genomes_project 8 83483280 83553187 + MGP_C57BL6NJ_P0090074 Anapc10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091237.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128318722 128340680 + MGP_C57BL6NJ_P0091237 Irf8 protein_coding protein_coding MGP_C57BL6NJ_T0091238.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128318723 128325628 + Irf8 protein_coding retained_intron MGP_C57BL6NJ_T0091239.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128318749 128337464 + MGP_C57BL6NJ_P0091239 Irf8 protein_coding protein_coding MGP_C57BL6NJ_T0091240.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128321003 128339567 + MGP_C57BL6NJ_P0091240 Irf8 protein_coding protein_coding MGP_C57BL6NJ_T0091242.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128329465 128337719 + Irf8 protein_coding retained_intron MGP_C57BL6NJ_T0091243.1 MGP_C57BL6NJ_G0034700.1 mouse_genomes_project 8 128336194 128337697 + Irf8 protein_coding processed_transcript MGP_C57BL6NJ_T0090970.1 MGP_C57BL6NJ_G0034615.1 mouse_genomes_project 8 116765497 116793167 - MGP_C57BL6NJ_P0090970 Calb2 protein_coding protein_coding MGP_C57BL6NJ_T0090496.1 MGP_C57BL6NJ_G0034437.1 mouse_genomes_project 8 97851115 97876637 - MGP_C57BL6NJ_P0090496 Ces1b protein_coding protein_coding MGP_C57BL6NJ_T0011207.1 MGP_C57BL6NJ_G0009292.1 mouse_genomes_project 8 10628242 10628372 + Gm38671 miRNA miRNA MGP_C57BL6NJ_T0018917.1 MGP_C57BL6NJ_G0016103.1 mouse_genomes_project 8 24562093 24569511 - Gm16159 processed_transcript processed_transcript MGP_C57BL6NJ_T0018918.1 MGP_C57BL6NJ_G0016103.1 mouse_genomes_project 8 24566105 24566988 - Gm16159 processed_transcript processed_transcript MGP_C57BL6NJ_T0016471.1 MGP_C57BL6NJ_G0014516.1 mouse_genomes_project 8 102765643 102766633 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016428.1 MGP_C57BL6NJ_G0014473.1 mouse_genomes_project 8 34993804 34994342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089111.1 MGP_C57BL6NJ_G0034016.1 mouse_genomes_project 8 33290205 33310344 + MGP_C57BL6NJ_P0089111 Ppp2cb protein_coding protein_coding MGP_C57BL6NJ_T0089151.1 MGP_C57BL6NJ_G0034027.1 mouse_genomes_project 8 34640936 34653507 + MGP_C57BL6NJ_P0089151 Dusp4 protein_coding protein_coding MGP_C57BL6NJ_T0091330.1 MGP_C57BL6NJ_G0034720.1 mouse_genomes_project 8 130196245 130202732 - MGP_C57BL6NJ_P0091330 Snai3 protein_coding protein_coding MGP_C57BL6NJ_T0089821.1 MGP_C57BL6NJ_G0034229.1 mouse_genomes_project 8 73872741 73886324 - MGP_C57BL6NJ_P0089821 Slc5a5 protein_coding protein_coding MGP_C57BL6NJ_T0091043.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118318811 118416174 + MGP_C57BL6NJ_P0091043 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091044.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118319015 118416484 + MGP_C57BL6NJ_P0091044 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091045.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118319015 118416484 + MGP_C57BL6NJ_P0091045 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091046.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118319217 118414232 + MGP_C57BL6NJ_P0091046 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091047.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118320338 118413427 + MGP_C57BL6NJ_P0091047 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091048.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118320488 118416180 + MGP_C57BL6NJ_P0091048 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091049.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118320681 118412390 + MGP_C57BL6NJ_P0091049 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091050.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118320705 118412955 + MGP_C57BL6NJ_P0091050 Znrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091051.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118321561 118413025 + MGP_C57BL6NJ_P0091051 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091052.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118321561 118416484 + MGP_C57BL6NJ_P0091052 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091053.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118321683 118399871 + Znrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0091054.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118324476 118412118 + MGP_C57BL6NJ_P0091054 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091055.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118347767 118397303 + Znrf1 protein_coding processed_transcript MGP_C57BL6NJ_T0091056.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118397254 118413416 + MGP_C57BL6NJ_P0091056 Znrf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091057.1 MGP_C57BL6NJ_G0034635.1 mouse_genomes_project 8 118399802 118412229 + MGP_C57BL6NJ_P0091057 Znrf1 protein_coding protein_coding MGP_C57BL6NJ_T0090816.1 MGP_C57BL6NJ_G0034554.1 mouse_genomes_project 8 112112985 112133169 + MGP_C57BL6NJ_P0090816 Tsnaxip1 protein_coding protein_coding MGP_C57BL6NJ_T0090086.1 MGP_C57BL6NJ_G0034317.1 mouse_genomes_project 8 84875201 84911034 - MGP_C57BL6NJ_P0090086 Usp38 protein_coding protein_coding MGP_C57BL6NJ_T0002474.1 MGP_C57BL6NJ_G0002363.1 mouse_genomes_project 8 88344343 88346524 + TEC TEC MGP_C57BL6NJ_T0098904.1 MGP_C57BL6NJ_G0036968.1 mouse_genomes_project 8 99928612 99933690 - pseudogene pseudogene MGP_C57BL6NJ_T0091273.1 MGP_C57BL6NJ_G0034708.1 mouse_genomes_project 8 129267729 129328304 - MGP_C57BL6NJ_P0091273 Zcchc14 protein_coding protein_coding MGP_C57BL6NJ_T0091274.1 MGP_C57BL6NJ_G0034708.1 mouse_genomes_project 8 129269376 129275385 - MGP_C57BL6NJ_P0091274 Zcchc14 protein_coding protein_coding MGP_C57BL6NJ_T0091275.1 MGP_C57BL6NJ_G0034708.1 mouse_genomes_project 8 129277084 129278089 - Zcchc14 protein_coding retained_intron MGP_C57BL6NJ_T0091276.1 MGP_C57BL6NJ_G0034708.1 mouse_genomes_project 8 129279454 129303168 - Zcchc14 protein_coding retained_intron MGP_C57BL6NJ_T0016444.1 MGP_C57BL6NJ_G0014489.1 mouse_genomes_project 8 71526584 71527206 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090920.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113852640 113861717 - Nob1 protein_coding retained_intron MGP_C57BL6NJ_T0090921.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113852640 113865196 - MGP_C57BL6NJ_P0090921 Nob1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090922.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113852750 113865210 - MGP_C57BL6NJ_P0090922 Nob1 protein_coding protein_coding MGP_C57BL6NJ_T0090923.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113856392 113865141 - Nob1 protein_coding retained_intron MGP_C57BL6NJ_T0090924.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113857849 113865206 - Nob1 protein_coding retained_intron MGP_C57BL6NJ_T0090925.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113858210 113862482 - Nob1 protein_coding processed_transcript MGP_C57BL6NJ_T0090926.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113858308 113858821 - Nob1 protein_coding retained_intron MGP_C57BL6NJ_T0090927.1 MGP_C57BL6NJ_G0034594.1 mouse_genomes_project 8 113858504 113865181 - MGP_C57BL6NJ_P0090927 Nob1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009337.1 MGP_C57BL6NJ_G0007506.1 mouse_genomes_project 8 91865943 91867126 - 1700120C18Rik lincRNA lincRNA MGP_C57BL6NJ_T0101975.1 MGP_C57BL6NJ_G0040021.1 mouse_genomes_project 8 137279894 137280026 + Gm22545 snoRNA snoRNA MGP_C57BL6NJ_T0088580.1 MGP_C57BL6NJ_G0033822.1 mouse_genomes_project 8 1272846 1276056 + MGP_C57BL6NJ_P0088580 Tgfbr3l protein_coding protein_coding MGP_C57BL6NJ_T0088581.1 MGP_C57BL6NJ_G0033822.1 mouse_genomes_project 8 1273265 1274154 + Tgfbr3l protein_coding processed_transcript MGP_C57BL6NJ_T0088582.1 MGP_C57BL6NJ_G0033822.1 mouse_genomes_project 8 1274961 1276056 + Tgfbr3l protein_coding processed_transcript MGP_C57BL6NJ_T0091399.1 MGP_C57BL6NJ_G0034738.1 mouse_genomes_project 8 131041658 131054118 - MGP_C57BL6NJ_P0091399 Chmp1a protein_coding protein_coding MGP_C57BL6NJ_T0091400.1 MGP_C57BL6NJ_G0034738.1 mouse_genomes_project 8 131042999 131051127 - Chmp1a protein_coding retained_intron MGP_C57BL6NJ_T0091401.1 MGP_C57BL6NJ_G0034738.1 mouse_genomes_project 8 131050944 131054121 - Chmp1a protein_coding retained_intron MGP_C57BL6NJ_T0088854.1 MGP_C57BL6NJ_G0033914.1 mouse_genomes_project 8 17318575 17320507 + MGP_C57BL6NJ_P0088854 Defb3 protein_coding protein_coding MGP_C57BL6NJ_T0090321.1 MGP_C57BL6NJ_G0034380.1 mouse_genomes_project 8 89205615 89207455 - MGP_C57BL6NJ_P0090321 Junb protein_coding protein_coding MGP_C57BL6NJ_T0090762.1 MGP_C57BL6NJ_G0034533.1 mouse_genomes_project 8 111531968 111545207 - MGP_C57BL6NJ_P0090762 Lrrc29 protein_coding protein_coding MGP_C57BL6NJ_T0089736.1 MGP_C57BL6NJ_G0034199.1 mouse_genomes_project 8 73309683 73318191 + MGP_C57BL6NJ_P0089736 Comp protein_coding protein_coding MGP_C57BL6NJ_T0011257.1 MGP_C57BL6NJ_G0009342.1 mouse_genomes_project 8 95425042 95425161 - Gm44382 miRNA miRNA MGP_C57BL6NJ_T0101960.1 MGP_C57BL6NJ_G0040006.1 mouse_genomes_project 8 107185638 107185763 - Gm22223 snoRNA snoRNA MGP_C57BL6NJ_T0101948.1 MGP_C57BL6NJ_G0039994.1 mouse_genomes_project 8 80703018 80703148 - Gm24838 snoRNA snoRNA MGP_C57BL6NJ_T0018959.1 MGP_C57BL6NJ_G0016120.1 mouse_genomes_project 8 117863157 117883961 - 9430091E24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018960.1 MGP_C57BL6NJ_G0016120.1 mouse_genomes_project 8 117863347 117883982 - 9430091E24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0089786.1 MGP_C57BL6NJ_G0034210.1 mouse_genomes_project 8 73553770 73565120 - MGP_C57BL6NJ_P0089786 Ssbp4 protein_coding protein_coding MGP_C57BL6NJ_T0009298.1 MGP_C57BL6NJ_G0007477.1 mouse_genomes_project 8 67542873 67590098 - lincRNA lincRNA MGP_C57BL6NJ_T0090476.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 95977603 96348589 + MGP_C57BL6NJ_P0090476 Fto protein_coding protein_coding MGP_C57BL6NJ_T0090477.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 95977606 96111854 + Fto protein_coding retained_intron MGP_C57BL6NJ_T0090478.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 95977629 96200253 + Fto protein_coding retained_intron MGP_C57BL6NJ_T0090479.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 95977639 96162162 + Fto protein_coding retained_intron MGP_C57BL6NJ_T0090480.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 96054455 96077909 + MGP_C57BL6NJ_P0090480 Fto protein_coding protein_coding MGP_C57BL6NJ_T0090481.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 96057274 96077533 + MGP_C57BL6NJ_P0090481 Fto protein_coding protein_coding MGP_C57BL6NJ_T0090482.1 MGP_C57BL6NJ_G0034428.1 mouse_genomes_project 8 96138559 96347099 + Fto protein_coding processed_transcript MGP_C57BL6NJ_T0005500.1 MGP_C57BL6NJ_G0004658.1 mouse_genomes_project 8 14097130 14103433 + Gm16346 antisense antisense MGP_C57BL6NJ_T0101914.1 MGP_C57BL6NJ_G0039960.1 mouse_genomes_project 8 14772452 14772572 + Gm25278 snoRNA snoRNA MGP_C57BL6NJ_T0090357.1 MGP_C57BL6NJ_G0034390.1 mouse_genomes_project 8 89320963 89322623 + MGP_C57BL6NJ_P0090357 Wdr83os protein_coding protein_coding MGP_C57BL6NJ_T0090358.1 MGP_C57BL6NJ_G0034390.1 mouse_genomes_project 8 89321196 89322623 + Wdr83os protein_coding retained_intron MGP_C57BL6NJ_T0090359.1 MGP_C57BL6NJ_G0034390.1 mouse_genomes_project 8 89321211 89322616 + MGP_C57BL6NJ_P0090359 Wdr83os protein_coding protein_coding MGP_C57BL6NJ_T0018913.1 MGP_C57BL6NJ_G0016100.1 mouse_genomes_project 8 10341100 10342403 + 4931415C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018914.1 MGP_C57BL6NJ_G0016100.1 mouse_genomes_project 8 10341341 10349110 + 4931415C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0009320.1 MGP_C57BL6NJ_G0007496.1 mouse_genomes_project 8 91290094 91290765 - Gm27168 lincRNA lincRNA MGP_C57BL6NJ_T0016409.1 MGP_C57BL6NJ_G0014454.1 mouse_genomes_project 8 17301907 17302745 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005546.1 MGP_C57BL6NJ_G0004695.1 mouse_genomes_project 8 115424242 115427853 - Gm20686 antisense antisense MGP_C57BL6NJ_T0016446.1 MGP_C57BL6NJ_G0014491.1 mouse_genomes_project 8 75684029 75684432 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101968.1 MGP_C57BL6NJ_G0040014.1 mouse_genomes_project 8 125447339 125447469 + Gm25200 snoRNA snoRNA MGP_C57BL6NJ_T0091028.1 MGP_C57BL6NJ_G0034630.1 mouse_genomes_project 8 117892922 118015004 - MGP_C57BL6NJ_P0091028 Glg1 protein_coding protein_coding MGP_C57BL6NJ_T0091029.1 MGP_C57BL6NJ_G0034630.1 mouse_genomes_project 8 117896026 117917344 - MGP_C57BL6NJ_P0091029 Glg1 protein_coding protein_coding MGP_C57BL6NJ_T0091030.1 MGP_C57BL6NJ_G0034630.1 mouse_genomes_project 8 117896066 118014988 - MGP_C57BL6NJ_P0091030 Glg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091031.1 MGP_C57BL6NJ_G0034630.1 mouse_genomes_project 8 117896399 118015004 - MGP_C57BL6NJ_P0091031 Glg1 protein_coding protein_coding MGP_C57BL6NJ_T0100665.1 MGP_C57BL6NJ_G0038711.1 mouse_genomes_project 8 96752717 96752821 + Gm24254 snRNA snRNA MGP_C57BL6NJ_T0103563.1 MGP_C57BL6NJ_G0041355.1 mouse_genomes_project 8 71323928 71324228 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011222.1 MGP_C57BL6NJ_G0009307.1 mouse_genomes_project 8 38402091 38402161 - Mir383 miRNA miRNA MGP_C57BL6NJ_T0091025.1 MGP_C57BL6NJ_G0034629.1 mouse_genomes_project 8 117824143 117846869 + MGP_C57BL6NJ_P0091025 Pdpr protein_coding protein_coding MGP_C57BL6NJ_T0091026.1 MGP_C57BL6NJ_G0034629.1 mouse_genomes_project 8 117824168 117869954 + MGP_C57BL6NJ_P0091026 Pdpr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091027.1 MGP_C57BL6NJ_G0034629.1 mouse_genomes_project 8 117824325 117874584 + MGP_C57BL6NJ_P0091027 Pdpr protein_coding protein_coding MGP_C57BL6NJ_T0016408.1 MGP_C57BL6NJ_G0014453.1 mouse_genomes_project 8 16657384 16657759 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089618.1 MGP_C57BL6NJ_G0034169.1 mouse_genomes_project 8 72610706 72620194 - MGP_C57BL6NJ_P0089618 Zfp963 protein_coding protein_coding MGP_C57BL6NJ_T0089620.1 MGP_C57BL6NJ_G0034169.1 mouse_genomes_project 8 72612043 72620202 - MGP_C57BL6NJ_P0089620 Zfp963 protein_coding protein_coding MGP_C57BL6NJ_T0009270.1 MGP_C57BL6NJ_G0007453.1 mouse_genomes_project 8 23299192 23316834 + Gm26714 lincRNA lincRNA MGP_C57BL6NJ_T0090684.1 MGP_C57BL6NJ_G0034501.1 mouse_genomes_project 8 110356213 110365410 + MGP_C57BL6NJ_P0090684 Cmtm2b protein_coding protein_coding MGP_C57BL6NJ_T0088708.1 MGP_C57BL6NJ_G0033861.1 mouse_genomes_project 8 10705526 10715302 + MGP_C57BL6NJ_P0088708 F7 protein_coding protein_coding MGP_C57BL6NJ_T0089213.1 MGP_C57BL6NJ_G0034048.1 mouse_genomes_project 8 41010749 41017809 + MGP_C57BL6NJ_P0089213 Adam24 protein_coding protein_coding MGP_C57BL6NJ_T0088824.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16570160 16807429 + MGP_C57BL6NJ_P0088824 Mcph1 protein_coding protein_coding MGP_C57BL6NJ_T0088825.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16570193 16715749 + MGP_C57BL6NJ_P0088825 Mcph1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088826.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16570605 16692785 + Mcph1 protein_coding retained_intron MGP_C57BL6NJ_T0088827.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16570611 16629160 + MGP_C57BL6NJ_P0088827 Mcph1 protein_coding protein_coding MGP_C57BL6NJ_T0088828.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16621821 16628139 + MGP_C57BL6NJ_P0088828 Mcph1 protein_coding protein_coding MGP_C57BL6NJ_T0088829.1 MGP_C57BL6NJ_G0033896.1 mouse_genomes_project 8 16628850 16651533 + MGP_C57BL6NJ_P0088829 Mcph1 protein_coding protein_coding MGP_C57BL6NJ_T0091156.1 MGP_C57BL6NJ_G0034677.1 mouse_genomes_project 8 126908368 126944422 - MGP_C57BL6NJ_P0091156 Slc38a8 protein_coding protein_coding MGP_C57BL6NJ_T0091157.1 MGP_C57BL6NJ_G0034677.1 mouse_genomes_project 8 126914285 126932122 - MGP_C57BL6NJ_P0091157 Slc38a8 protein_coding protein_coding MGP_C57BL6NJ_T0091158.1 MGP_C57BL6NJ_G0034677.1 mouse_genomes_project 8 126914863 126928736 - Slc38a8 protein_coding retained_intron MGP_C57BL6NJ_T0091159.1 MGP_C57BL6NJ_G0034677.1 mouse_genomes_project 8 126928040 126944018 - MGP_C57BL6NJ_P0091159 Slc38a8 protein_coding protein_coding MGP_C57BL6NJ_T0091160.1 MGP_C57BL6NJ_G0034677.1 mouse_genomes_project 8 126931219 126944419 - MGP_C57BL6NJ_P0091160 Slc38a8 protein_coding protein_coding MGP_C57BL6NJ_T0090217.1 MGP_C57BL6NJ_G0034361.1 mouse_genomes_project 8 88869967 88876492 - MGP_C57BL6NJ_P0090217 protein_coding protein_coding MGP_C57BL6NJ_T0091355.1 MGP_C57BL6NJ_G0034726.1 mouse_genomes_project 8 130343943 130379652 - MGP_C57BL6NJ_P0091355 Galns protein_coding protein_coding MGP_C57BL6NJ_T0090186.1 MGP_C57BL6NJ_G0034352.1 mouse_genomes_project 8 88273128 88289847 - MGP_C57BL6NJ_P0090186 Cc2d1a protein_coding protein_coding MGP_C57BL6NJ_T0090187.1 MGP_C57BL6NJ_G0034352.1 mouse_genomes_project 8 88273128 88289918 - MGP_C57BL6NJ_P0090187 Cc2d1a protein_coding protein_coding MGP_C57BL6NJ_T0090188.1 MGP_C57BL6NJ_G0034352.1 mouse_genomes_project 8 88273137 88277089 - Cc2d1a protein_coding retained_intron MGP_C57BL6NJ_T0090189.1 MGP_C57BL6NJ_G0034352.1 mouse_genomes_project 8 88288432 88289879 - Cc2d1a protein_coding processed_transcript MGP_C57BL6NJ_T0088845.1 MGP_C57BL6NJ_G0033906.1 mouse_genomes_project 8 17150980 17153769 + MGP_C57BL6NJ_P0088845 Defb34 protein_coding protein_coding MGP_C57BL6NJ_T0100678.1 MGP_C57BL6NJ_G0038724.1 mouse_genomes_project 8 125767547 125767654 - Gm24035 snRNA snRNA MGP_C57BL6NJ_T0011981.1 MGP_C57BL6NJ_G0010066.1 mouse_genomes_project 8 31196793 31196894 - Gm24184 misc_RNA misc_RNA MGP_C57BL6NJ_T0090079.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84565720 84610656 - MGP_C57BL6NJ_P0090079 Smarca5 protein_coding protein_coding MGP_C57BL6NJ_T0090080.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84572698 84610584 - Smarca5 protein_coding processed_transcript MGP_C57BL6NJ_T0090081.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84576639 84578912 - Smarca5 protein_coding retained_intron MGP_C57BL6NJ_T0090082.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84576951 84578075 - Smarca5 protein_coding retained_intron MGP_C57BL6NJ_T0090083.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84585108 84586729 - Smarca5 protein_coding retained_intron MGP_C57BL6NJ_T0090084.1 MGP_C57BL6NJ_G0034315.1 mouse_genomes_project 8 84595592 84596403 - Smarca5 protein_coding retained_intron MGP_C57BL6NJ_T0090685.1 MGP_C57BL6NJ_G0034502.1 mouse_genomes_project 8 110376206 110382683 + MGP_C57BL6NJ_P0090685 Cmtm3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088898.1 MGP_C57BL6NJ_G0033943.1 mouse_genomes_project 8 21120217 21139521 + MGP_C57BL6NJ_P0088898 Mrps31 protein_coding protein_coding MGP_C57BL6NJ_T0090497.1 MGP_C57BL6NJ_G0034438.1 mouse_genomes_project 8 97897063 97929320 - MGP_C57BL6NJ_P0090497 Ces1c protein_coding protein_coding MGP_C57BL6NJ_T0090498.1 MGP_C57BL6NJ_G0034438.1 mouse_genomes_project 8 97910178 97929332 - Ces1c protein_coding retained_intron MGP_C57BL6NJ_T0090499.1 MGP_C57BL6NJ_G0034438.1 mouse_genomes_project 8 97911612 97922624 - MGP_C57BL6NJ_P0090499 Ces1c protein_coding protein_coding MGP_C57BL6NJ_T0090031.1 MGP_C57BL6NJ_G0034297.1 mouse_genomes_project 8 81131611 81168668 + MGP_C57BL6NJ_P0090031 Prmt9 protein_coding protein_coding MGP_C57BL6NJ_T0090032.1 MGP_C57BL6NJ_G0034297.1 mouse_genomes_project 8 81131621 81146224 + Prmt9 protein_coding retained_intron MGP_C57BL6NJ_T0090033.1 MGP_C57BL6NJ_G0034297.1 mouse_genomes_project 8 81131624 81168668 + MGP_C57BL6NJ_P0090033 Prmt9 protein_coding protein_coding MGP_C57BL6NJ_T0090034.1 MGP_C57BL6NJ_G0034297.1 mouse_genomes_project 8 81145907 81147339 + Prmt9 protein_coding retained_intron MGP_C57BL6NJ_T0090101.1 MGP_C57BL6NJ_G0034321.1 mouse_genomes_project 8 86878016 87127555 + MGP_C57BL6NJ_P0090101 Rnf150 protein_coding protein_coding MGP_C57BL6NJ_T0091136.1 MGP_C57BL6NJ_G0034670.1 mouse_genomes_project 8 124977890 125057046 + MGP_C57BL6NJ_P0091136 Hsd17b2 protein_coding protein_coding MGP_C57BL6NJ_T0090491.1 MGP_C57BL6NJ_G0034434.1 mouse_genomes_project 8 97688391 97689392 + MGP_C57BL6NJ_P0090491 Capns2 protein_coding protein_coding MGP_C57BL6NJ_T0100639.1 MGP_C57BL6NJ_G0038685.1 mouse_genomes_project 8 36374742 36374893 - Gm26150 snRNA snRNA MGP_C57BL6NJ_T0011264.1 MGP_C57BL6NJ_G0009349.1 mouse_genomes_project 8 110791154 110791229 - Gm44328 miRNA miRNA MGP_C57BL6NJ_T0009291.1 MGP_C57BL6NJ_G0007470.1 mouse_genomes_project 8 47578906 47591565 - lincRNA lincRNA MGP_C57BL6NJ_T0090123.1 MGP_C57BL6NJ_G0034331.1 mouse_genomes_project 8 87667946 87671674 + MGP_C57BL6NJ_P0090123 Dnajb1 protein_coding protein_coding MGP_C57BL6NJ_T0090256.1 MGP_C57BL6NJ_G0034365.1 mouse_genomes_project 8 88928031 88931869 + MGP_C57BL6NJ_P0090256 G430095P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0088868.1 MGP_C57BL6NJ_G0033926.1 mouse_genomes_project 8 20477828 20478304 + MGP_C57BL6NJ_P0088868 Defb2 protein_coding protein_coding MGP_C57BL6NJ_T0100661.1 MGP_C57BL6NJ_G0038707.1 mouse_genomes_project 8 89586381 89586488 + Gm22336 snRNA snRNA MGP_C57BL6NJ_T0099523.1 MGP_C57BL6NJ_G0037575.1 mouse_genomes_project 8 90307764 90310162 + Hm629797 sense_intronic sense_intronic MGP_C57BL6NJ_T0016453.1 MGP_C57BL6NJ_G0014498.1 mouse_genomes_project 8 83305094 83306069 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089122.1 MGP_C57BL6NJ_G0034020.1 mouse_genomes_project 8 33442885 33448544 - MGP_C57BL6NJ_P0089122 Smim18 protein_coding protein_coding MGP_C57BL6NJ_T0091456.1 MGP_C57BL6NJ_G0034751.1 mouse_genomes_project 8 131396975 131407685 - MGP_C57BL6NJ_P0091456 Dbndd1 protein_coding protein_coding MGP_C57BL6NJ_T0091457.1 MGP_C57BL6NJ_G0034751.1 mouse_genomes_project 8 131397944 131407620 - MGP_C57BL6NJ_P0091457 Dbndd1 protein_coding protein_coding MGP_C57BL6NJ_T0091458.1 MGP_C57BL6NJ_G0034751.1 mouse_genomes_project 8 131397944 131407693 - MGP_C57BL6NJ_P0091458 Dbndd1 protein_coding protein_coding MGP_C57BL6NJ_T0011244.1 MGP_C57BL6NJ_G0009329.1 mouse_genomes_project 8 88320657 88320746 - Mir181c miRNA miRNA MGP_C57BL6NJ_T0088715.1 MGP_C57BL6NJ_G0033863.1 mouse_genomes_project 8 10740379 10757988 + MGP_C57BL6NJ_P0088715 Proz protein_coding protein_coding MGP_C57BL6NJ_T0090277.1 MGP_C57BL6NJ_G0034372.1 mouse_genomes_project 8 89077531 89095730 + MGP_C57BL6NJ_P0090277 Syce2 protein_coding protein_coding MGP_C57BL6NJ_T0090278.1 MGP_C57BL6NJ_G0034372.1 mouse_genomes_project 8 89077531 89096505 + MGP_C57BL6NJ_P0090278 Syce2 protein_coding protein_coding MGP_C57BL6NJ_T0090279.1 MGP_C57BL6NJ_G0034372.1 mouse_genomes_project 8 89077612 89095740 + MGP_C57BL6NJ_P0090279 Syce2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090280.1 MGP_C57BL6NJ_G0034372.1 mouse_genomes_project 8 89077857 89094286 + Syce2 protein_coding retained_intron MGP_C57BL6NJ_T0009308.1 MGP_C57BL6NJ_G0007485.1 mouse_genomes_project 8 81217204 81222257 + 1700092C02Rik lincRNA lincRNA MGP_C57BL6NJ_T0011259.1 MGP_C57BL6NJ_G0009344.1 mouse_genomes_project 8 99234388 99234459 + Mir138-2 miRNA miRNA MGP_C57BL6NJ_T0088612.1 MGP_C57BL6NJ_G0033829.1 mouse_genomes_project 8 1648636 1671167 + MGP_C57BL6NJ_P0088612 Zfp958 protein_coding protein_coding MGP_C57BL6NJ_T0088613.1 MGP_C57BL6NJ_G0033829.1 mouse_genomes_project 8 1667457 1670998 + MGP_C57BL6NJ_P0088613 Zfp958 protein_coding protein_coding MGP_C57BL6NJ_T0090306.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89184373 89194771 - MGP_C57BL6NJ_P0090306 Rnaseh2a protein_coding protein_coding MGP_C57BL6NJ_T0090307.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89184384 89184823 - Rnaseh2a protein_coding retained_intron MGP_C57BL6NJ_T0090308.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89184429 89194693 - MGP_C57BL6NJ_P0090308 Rnaseh2a protein_coding protein_coding MGP_C57BL6NJ_T0090309.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89184680 89194668 - Rnaseh2a protein_coding retained_intron MGP_C57BL6NJ_T0090310.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89194313 89198474 - MGP_C57BL6NJ_P0090310 Rnaseh2a protein_coding protein_coding MGP_C57BL6NJ_T0090311.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89194658 89195583 - MGP_C57BL6NJ_P0090311 Rnaseh2a protein_coding protein_coding MGP_C57BL6NJ_T0090312.1 MGP_C57BL6NJ_G0034378.1 mouse_genomes_project 8 89194935 89198288 - Rnaseh2a protein_coding processed_transcript MGP_C57BL6NJ_T0009274.1 MGP_C57BL6NJ_G0007457.1 mouse_genomes_project 8 27925963 27928058 + Gm26795 lincRNA lincRNA MGP_C57BL6NJ_T0009275.1 MGP_C57BL6NJ_G0007457.1 mouse_genomes_project 8 27925990 27926767 + Gm26795 lincRNA lincRNA MGP_C57BL6NJ_T0090631.1 MGP_C57BL6NJ_G0034479.1 mouse_genomes_project 8 100334212 100340026 - MGP_C57BL6NJ_P0090631 Zfp319 protein_coding protein_coding MGP_C57BL6NJ_T0090736.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111430250 111467711 + MGP_C57BL6NJ_P0090736 D230025D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0090737.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111430311 111465783 + D230025D16Rik protein_coding retained_intron MGP_C57BL6NJ_T0090738.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111430311 111467414 + MGP_C57BL6NJ_P0090738 D230025D16Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090739.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111430372 111467711 + MGP_C57BL6NJ_P0090739 D230025D16Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090740.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111436070 111453705 + MGP_C57BL6NJ_P0090740 D230025D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0090741.1 MGP_C57BL6NJ_G0034523.1 mouse_genomes_project 8 111461150 111466423 + D230025D16Rik protein_coding retained_intron MGP_C57BL6NJ_T0009316.1 MGP_C57BL6NJ_G0007492.1 mouse_genomes_project 8 88352349 88353039 + Gm26532 lincRNA lincRNA MGP_C57BL6NJ_T0016459.1 MGP_C57BL6NJ_G0014504.1 mouse_genomes_project 8 85743280 85743631 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089101.1 MGP_C57BL6NJ_G0034011.1 mouse_genomes_project 8 31512083 31580025 - MGP_C57BL6NJ_P0089101 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0089415.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56300245 56398094 - MGP_C57BL6NJ_P0089415 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089416.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56300423 56403803 - MGP_C57BL6NJ_P0089416 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089417.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56300803 56321266 - Wdr17 protein_coding retained_intron MGP_C57BL6NJ_T0089418.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56300822 56403783 - MGP_C57BL6NJ_P0089418 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089419.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56300834 56403762 - MGP_C57BL6NJ_P0089419 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089420.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56321872 56328070 - Wdr17 protein_coding retained_intron MGP_C57BL6NJ_T0089421.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56341498 56367426 - MGP_C57BL6NJ_P0089421 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089422.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56341542 56403765 - Wdr17 protein_coding processed_transcript MGP_C57BL6NJ_T0089423.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56364716 56403763 - MGP_C57BL6NJ_P0089423 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089424.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56365048 56403889 - Wdr17 protein_coding processed_transcript MGP_C57BL6NJ_T0089425.1 MGP_C57BL6NJ_G0034109.1 mouse_genomes_project 8 56370607 56570710 - MGP_C57BL6NJ_P0089425 Wdr17 protein_coding protein_coding MGP_C57BL6NJ_T0089608.1 MGP_C57BL6NJ_G0034164.1 mouse_genomes_project 8 72164380 72165591 - MGP_C57BL6NJ_P0089608 protein_coding protein_coding MGP_C57BL6NJ_T0098905.1 MGP_C57BL6NJ_G0036969.1 mouse_genomes_project 8 123941011 123942347 - pseudogene pseudogene MGP_C57BL6NJ_T0091217.1 MGP_C57BL6NJ_G0034695.1 mouse_genomes_project 8 128133333 128146736 - Gins2 protein_coding retained_intron MGP_C57BL6NJ_T0091218.1 MGP_C57BL6NJ_G0034695.1 mouse_genomes_project 8 128133333 128147060 - MGP_C57BL6NJ_P0091218 Gins2 protein_coding protein_coding MGP_C57BL6NJ_T0091219.1 MGP_C57BL6NJ_G0034695.1 mouse_genomes_project 8 128136244 128142874 - Gins2 protein_coding retained_intron MGP_C57BL6NJ_T0091220.1 MGP_C57BL6NJ_G0034695.1 mouse_genomes_project 8 128136855 128146790 - Gins2 protein_coding processed_transcript MGP_C57BL6NJ_T0089825.1 MGP_C57BL6NJ_G0034233.1 mouse_genomes_project 8 74176053 74188328 + MGP_C57BL6NJ_P0089825 protein_coding protein_coding MGP_C57BL6NJ_T0101910.1 MGP_C57BL6NJ_G0039956.1 mouse_genomes_project 8 4919324 4919453 + Gm25169 snoRNA snoRNA MGP_C57BL6NJ_T0089359.1 MGP_C57BL6NJ_G0034087.1 mouse_genomes_project 8 47591794 47708659 + MGP_C57BL6NJ_P0089359 Irf2 protein_coding protein_coding MGP_C57BL6NJ_T0089384.1 MGP_C57BL6NJ_G0034097.1 mouse_genomes_project 8 48821445 48823728 + MGP_C57BL6NJ_P0089384 Cldn24 protein_coding protein_coding MGP_C57BL6NJ_T0090382.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90145914 90190897 + Phkb protein_coding processed_transcript MGP_C57BL6NJ_T0090383.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90145946 90243175 + MGP_C57BL6NJ_P0090383 Phkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090384.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90145957 90378215 + MGP_C57BL6NJ_P0090384 Phkb protein_coding protein_coding MGP_C57BL6NJ_T0090385.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90145963 90228514 + Phkb protein_coding processed_transcript MGP_C57BL6NJ_T0090386.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90145971 90228248 + MGP_C57BL6NJ_P0090386 Phkb protein_coding protein_coding MGP_C57BL6NJ_T0090387.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90147742 90204381 + MGP_C57BL6NJ_P0090387 Phkb protein_coding protein_coding MGP_C57BL6NJ_T0090388.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90148006 90190984 + MGP_C57BL6NJ_P0090388 Phkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090389.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90332538 90345480 + MGP_C57BL6NJ_P0090389 Phkb protein_coding protein_coding MGP_C57BL6NJ_T0090390.1 MGP_C57BL6NJ_G0034403.1 mouse_genomes_project 8 90350734 90377480 + Phkb protein_coding processed_transcript MGP_C57BL6NJ_T0090077.1 MGP_C57BL6NJ_G0034313.1 mouse_genomes_project 8 84337846 84357034 + MGP_C57BL6NJ_P0090077 Gypa protein_coding protein_coding MGP_C57BL6NJ_T0090874.1 MGP_C57BL6NJ_G0034578.1 mouse_genomes_project 8 112862484 112912265 + MGP_C57BL6NJ_P0090874 Cdh3 protein_coding protein_coding MGP_C57BL6NJ_T0088496.1 MGP_C57BL6NJ_G0033800.1 mouse_genomes_project 8 526802 532573 + protein_coding retained_intron MGP_C57BL6NJ_T0088497.1 MGP_C57BL6NJ_G0033800.1 mouse_genomes_project 8 526807 550501 + protein_coding retained_intron MGP_C57BL6NJ_T0088498.1 MGP_C57BL6NJ_G0033800.1 mouse_genomes_project 8 526810 570698 + MGP_C57BL6NJ_P0088498 protein_coding protein_coding MGP_C57BL6NJ_T0005568.1 MGP_C57BL6NJ_G0004715.1 mouse_genomes_project 8 133274222 133277146 - Gm16237 antisense antisense MGP_C57BL6NJ_T0002475.1 MGP_C57BL6NJ_G0002364.1 mouse_genomes_project 8 89705629 89706259 + TEC TEC MGP_C57BL6NJ_T0002476.1 MGP_C57BL6NJ_G0002364.1 mouse_genomes_project 8 89705629 89706267 + TEC TEC MGP_C57BL6NJ_T0101924.1 MGP_C57BL6NJ_G0039970.1 mouse_genomes_project 8 33389262 33389406 + Gm24727 snoRNA snoRNA MGP_C57BL6NJ_T0101944.1 MGP_C57BL6NJ_G0039990.1 mouse_genomes_project 8 73029865 73029991 - Gm25906 snoRNA snoRNA MGP_C57BL6NJ_T0089918.1 MGP_C57BL6NJ_G0034257.1 mouse_genomes_project 8 74833896 74837651 + Jak3 protein_coding retained_intron MGP_C57BL6NJ_T0089919.1 MGP_C57BL6NJ_G0034257.1 mouse_genomes_project 8 74835679 74847575 + Jak3 protein_coding retained_intron MGP_C57BL6NJ_T0089920.1 MGP_C57BL6NJ_G0034257.1 mouse_genomes_project 8 74835682 74845910 + MGP_C57BL6NJ_P0089920 Jak3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089941.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147907 75169169 + MGP_C57BL6NJ_P0089941 Zfp961 protein_coding protein_coding MGP_C57BL6NJ_T0089942.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147917 75169169 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089943.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147935 75168762 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089944.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147936 75167114 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089945.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147939 75166889 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089946.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147940 75167165 + MGP_C57BL6NJ_P0089946 Zfp961 protein_coding protein_coding MGP_C57BL6NJ_T0089947.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147946 75167005 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089948.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147949 75167354 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089949.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147950 75165080 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089950.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147950 75167815 + MGP_C57BL6NJ_P0089950 Zfp961 protein_coding protein_coding MGP_C57BL6NJ_T0089951.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147960 75192235 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089952.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75147960 75170552 + MGP_C57BL6NJ_P0089952 Zfp961 protein_coding protein_coding MGP_C57BL6NJ_T0089953.1 MGP_C57BL6NJ_G0034264.1 mouse_genomes_project 8 75151519 75167012 + Zfp961 protein_coding processed_transcript MGP_C57BL6NJ_T0089785.1 MGP_C57BL6NJ_G0034209.1 mouse_genomes_project 8 73550760 73553568 + MGP_C57BL6NJ_P0089785 Isyna1 protein_coding protein_coding MGP_C57BL6NJ_T0089080.1 MGP_C57BL6NJ_G0034000.1 mouse_genomes_project 8 26609080 26640934 + MGP_C57BL6NJ_P0089080 Chrnb3 protein_coding protein_coding MGP_C57BL6NJ_T0089081.1 MGP_C57BL6NJ_G0034000.1 mouse_genomes_project 8 26609080 26640934 + MGP_C57BL6NJ_P0089081 Chrnb3 protein_coding protein_coding MGP_C57BL6NJ_T0101962.1 MGP_C57BL6NJ_G0040008.1 mouse_genomes_project 8 116423282 116423367 + Snord71 snoRNA snoRNA MGP_C57BL6NJ_T0091372.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130891270 130908170 + MGP_C57BL6NJ_P0091372 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0091373.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130893507 130927919 + MGP_C57BL6NJ_P0091373 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0091374.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130893756 130927922 + MGP_C57BL6NJ_P0091374 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0091375.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130893804 130927912 + MGP_C57BL6NJ_P0091375 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0091376.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130893836 130927910 + Spg7 protein_coding retained_intron MGP_C57BL6NJ_T0091377.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130902123 130917616 + MGP_C57BL6NJ_P0091377 Spg7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091378.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130908591 130917642 + Spg7 protein_coding retained_intron MGP_C57BL6NJ_T0091379.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130908963 130927912 + MGP_C57BL6NJ_P0091379 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0091380.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130915891 130924412 + Spg7 protein_coding retained_intron MGP_C57BL6NJ_T0091381.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130916061 130920370 + Spg7 protein_coding processed_transcript MGP_C57BL6NJ_T0091382.1 MGP_C57BL6NJ_G0034733.1 mouse_genomes_project 8 130920329 130927912 + MGP_C57BL6NJ_P0091382 Spg7 protein_coding protein_coding MGP_C57BL6NJ_T0090405.1 MGP_C57BL6NJ_G0034406.1 mouse_genomes_project 8 91088264 91089169 + MGP_C57BL6NJ_P0090405 Gm10638 protein_coding protein_coding MGP_C57BL6NJ_T0090714.1 MGP_C57BL6NJ_G0034513.1 mouse_genomes_project 8 110937312 110946486 + MGP_C57BL6NJ_P0090714 Ces2b protein_coding protein_coding MGP_C57BL6NJ_T0090715.1 MGP_C57BL6NJ_G0034513.1 mouse_genomes_project 8 110937341 110945000 + MGP_C57BL6NJ_P0090715 Ces2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089269.1 MGP_C57BL6NJ_G0034071.1 mouse_genomes_project 8 46134000 46153968 - MGP_C57BL6NJ_P0089269 Tlr3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089815.1 MGP_C57BL6NJ_G0034225.1 mouse_genomes_project 8 73819357 73823923 - MGP_C57BL6NJ_P0089815 Arrdc2 protein_coding protein_coding MGP_C57BL6NJ_T0009304.1 MGP_C57BL6NJ_G0007482.1 mouse_genomes_project 8 75367639 75371063 - Gm26586 lincRNA lincRNA MGP_C57BL6NJ_T0101957.1 MGP_C57BL6NJ_G0040003.1 mouse_genomes_project 8 100830841 100830976 - Gm26265 snoRNA snoRNA MGP_C57BL6NJ_T0089262.1 MGP_C57BL6NJ_G0034067.1 mouse_genomes_project 8 45957821 45982828 - MGP_C57BL6NJ_P0089262 F11 protein_coding protein_coding MGP_C57BL6NJ_T0011281.1 MGP_C57BL6NJ_G0009366.1 mouse_genomes_project 8 124806282 124806337 - Gm27361 miRNA miRNA MGP_C57BL6NJ_T0090898.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113475571 113506015 - MGP_C57BL6NJ_P0090898 Terf2 protein_coding protein_coding MGP_C57BL6NJ_T0090899.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113475573 113505660 - MGP_C57BL6NJ_P0090899 Terf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090900.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113475573 113506015 - MGP_C57BL6NJ_P0090900 Terf2 protein_coding protein_coding MGP_C57BL6NJ_T0090901.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113476099 113505984 - MGP_C57BL6NJ_P0090901 Terf2 protein_coding protein_coding MGP_C57BL6NJ_T0090902.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113481688 113506017 - MGP_C57BL6NJ_P0090902 Terf2 protein_coding protein_coding MGP_C57BL6NJ_T0090903.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113482490 113486046 - Terf2 protein_coding retained_intron MGP_C57BL6NJ_T0090904.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113485598 113487625 - Terf2 protein_coding retained_intron MGP_C57BL6NJ_T0090905.1 MGP_C57BL6NJ_G0034590.1 mouse_genomes_project 8 113485607 113489401 - Terf2 protein_coding retained_intron MGP_C57BL6NJ_T0091260.1 MGP_C57BL6NJ_G0034703.1 mouse_genomes_project 8 128734022 128736747 + MGP_C57BL6NJ_P0091260 Foxc2 protein_coding protein_coding MGP_C57BL6NJ_T0005509.1 MGP_C57BL6NJ_G0004664.1 mouse_genomes_project 8 26202103 26202769 - Proscos antisense antisense MGP_C57BL6NJ_T0005510.1 MGP_C57BL6NJ_G0004664.1 mouse_genomes_project 8 26202108 26202724 - Proscos antisense antisense MGP_C57BL6NJ_T0011979.1 MGP_C57BL6NJ_G0010064.1 mouse_genomes_project 8 25339893 25340152 - Gm22227 misc_RNA misc_RNA MGP_C57BL6NJ_T0011212.1 MGP_C57BL6NJ_G0009297.1 mouse_genomes_project 8 14043443 14043525 - Mir3106 miRNA miRNA MGP_C57BL6NJ_T0089487.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63744905 63761267 + MGP_C57BL6NJ_P0089487 Cbr4 protein_coding protein_coding MGP_C57BL6NJ_T0089488.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63744906 63748771 + MGP_C57BL6NJ_P0089488 Cbr4 protein_coding protein_coding MGP_C57BL6NJ_T0089489.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63744926 63749089 + Cbr4 protein_coding retained_intron MGP_C57BL6NJ_T0089490.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63744940 63761114 + Cbr4 protein_coding retained_intron MGP_C57BL6NJ_T0089491.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63748593 63761114 + Cbr4 protein_coding retained_intron MGP_C57BL6NJ_T0089492.1 MGP_C57BL6NJ_G0034130.1 mouse_genomes_project 8 63752613 63761174 + Cbr4 protein_coding retained_intron MGP_C57BL6NJ_T0101922.1 MGP_C57BL6NJ_G0039968.1 mouse_genomes_project 8 24654499 24654629 + Gm24992 snoRNA snoRNA MGP_C57BL6NJ_T0090933.1 MGP_C57BL6NJ_G0034599.1 mouse_genomes_project 8 116114049 116131614 - MGP_C57BL6NJ_P0090933 Dhx38 protein_coding protein_coding MGP_C57BL6NJ_T0090723.1 MGP_C57BL6NJ_G0034518.1 mouse_genomes_project 8 111160071 111172537 + MGP_C57BL6NJ_P0090723 Ces2h protein_coding protein_coding MGP_C57BL6NJ_T0090577.1 MGP_C57BL6NJ_G0034464.1 mouse_genomes_project 8 99711180 99718117 + Cx3cl1 protein_coding processed_transcript MGP_C57BL6NJ_T0090578.1 MGP_C57BL6NJ_G0034464.1 mouse_genomes_project 8 99711180 99723243 + MGP_C57BL6NJ_P0090578 Cx3cl1 protein_coding protein_coding MGP_C57BL6NJ_T0090579.1 MGP_C57BL6NJ_G0034464.1 mouse_genomes_project 8 99711375 99718810 + MGP_C57BL6NJ_P0090579 Cx3cl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090580.1 MGP_C57BL6NJ_G0034464.1 mouse_genomes_project 8 99711396 99719194 + MGP_C57BL6NJ_P0090580 Cx3cl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090201.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88402411 88414475 - MGP_C57BL6NJ_P0090201 Ccdc130 protein_coding protein_coding MGP_C57BL6NJ_T0090202.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88402420 88406025 - Ccdc130 protein_coding retained_intron MGP_C57BL6NJ_T0090203.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88403233 88410957 - MGP_C57BL6NJ_P0090203 Ccdc130 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090204.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88404514 88406264 - Ccdc130 protein_coding retained_intron MGP_C57BL6NJ_T0090205.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88408024 88414485 - MGP_C57BL6NJ_P0090205 Ccdc130 protein_coding protein_coding MGP_C57BL6NJ_T0090206.1 MGP_C57BL6NJ_G0034358.1 mouse_genomes_project 8 88408299 88414482 - Ccdc130 protein_coding retained_intron MGP_C57BL6NJ_T0005557.1 MGP_C57BL6NJ_G0004705.1 mouse_genomes_project 8 124251273 124258416 + Gm15395 antisense antisense MGP_C57BL6NJ_T0005536.1 MGP_C57BL6NJ_G0004687.1 mouse_genomes_project 8 96301636 96309918 - Gm3235 antisense antisense MGP_C57BL6NJ_T0091507.1 MGP_C57BL6NJ_G0034772.1 mouse_genomes_project 8 132838438 132861581 - MGP_C57BL6NJ_P0091507 2810004N23Rik protein_coding protein_coding MGP_C57BL6NJ_T0098897.1 MGP_C57BL6NJ_G0036961.1 mouse_genomes_project 8 7311066 7311416 - pseudogene pseudogene MGP_C57BL6NJ_T0011243.1 MGP_C57BL6NJ_G0009328.1 mouse_genomes_project 8 88320500 88320572 - Mir181d miRNA miRNA MGP_C57BL6NJ_T0090371.1 MGP_C57BL6NJ_G0034398.1 mouse_genomes_project 8 89677570 89705785 - MGP_C57BL6NJ_P0090371 4921524J17Rik protein_coding protein_coding MGP_C57BL6NJ_T0090372.1 MGP_C57BL6NJ_G0034398.1 mouse_genomes_project 8 89677664 89705668 - MGP_C57BL6NJ_P0090372 4921524J17Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090516.1 MGP_C57BL6NJ_G0034444.1 mouse_genomes_project 8 98345691 98382130 - MGP_C57BL6NJ_P0090516 Ces5a protein_coding protein_coding MGP_C57BL6NJ_T0089816.1 MGP_C57BL6NJ_G0034226.1 mouse_genomes_project 8 73826251 73843627 - MGP_C57BL6NJ_P0089816 Kcnn1 protein_coding protein_coding MGP_C57BL6NJ_T0089817.1 MGP_C57BL6NJ_G0034226.1 mouse_genomes_project 8 73826251 73843627 - MGP_C57BL6NJ_P0089817 Kcnn1 protein_coding protein_coding MGP_C57BL6NJ_T0089818.1 MGP_C57BL6NJ_G0034226.1 mouse_genomes_project 8 73827358 73843600 - MGP_C57BL6NJ_P0089818 Kcnn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090513.1 MGP_C57BL6NJ_G0034442.1 mouse_genomes_project 8 98109720 98160630 - MGP_C57BL6NJ_P0090513 Ces1g protein_coding protein_coding MGP_C57BL6NJ_T0090514.1 MGP_C57BL6NJ_G0034442.1 mouse_genomes_project 8 98110256 98160476 - MGP_C57BL6NJ_P0090514 Ces1g protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090378.1 MGP_C57BL6NJ_G0034400.1 mouse_genomes_project 8 89819108 89837664 - MGP_C57BL6NJ_P0090378 Dnaja2 protein_coding protein_coding MGP_C57BL6NJ_T0090124.1 MGP_C57BL6NJ_G0034332.1 mouse_genomes_project 8 87713519 87727090 + MGP_C57BL6NJ_P0090124 Gipc1 protein_coding protein_coding MGP_C57BL6NJ_T0016415.1 MGP_C57BL6NJ_G0014460.1 mouse_genomes_project 8 19261047 19261783 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005504.1 MGP_C57BL6NJ_G0004661.1 mouse_genomes_project 8 21536925 21540697 + 1700041G16Rik antisense antisense MGP_C57BL6NJ_T0005505.1 MGP_C57BL6NJ_G0004661.1 mouse_genomes_project 8 21539434 21539892 + 1700041G16Rik antisense antisense MGP_C57BL6NJ_T0011267.1 MGP_C57BL6NJ_G0009352.1 mouse_genomes_project 8 111878971 111879079 + Mir1966 miRNA miRNA MGP_C57BL6NJ_T0090687.1 MGP_C57BL6NJ_G0034504.1 mouse_genomes_project 8 110468718 110495438 - MGP_C57BL6NJ_P0090687 Dync1li2 protein_coding protein_coding MGP_C57BL6NJ_T0009285.1 MGP_C57BL6NJ_G0007464.1 mouse_genomes_project 8 33962196 33971483 + Gm29243 lincRNA lincRNA MGP_C57BL6NJ_T0016431.1 MGP_C57BL6NJ_G0014476.1 mouse_genomes_project 8 37878222 37879249 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016468.1 MGP_C57BL6NJ_G0014513.1 mouse_genomes_project 8 99779281 99781144 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100682.1 MGP_C57BL6NJ_G0038728.1 mouse_genomes_project 8 132323205 132323291 + Gm24459 snRNA snRNA MGP_C57BL6NJ_T0089428.1 MGP_C57BL6NJ_G0034112.1 mouse_genomes_project 8 57729410 57844334 + Glra3 protein_coding processed_transcript MGP_C57BL6NJ_T0089429.1 MGP_C57BL6NJ_G0034112.1 mouse_genomes_project 8 57729459 57937636 + MGP_C57BL6NJ_P0089429 Glra3 protein_coding protein_coding MGP_C57BL6NJ_T0009351.1 MGP_C57BL6NJ_G0007514.1 mouse_genomes_project 8 97067080 97069663 - Gm21817 lincRNA lincRNA MGP_C57BL6NJ_T0018949.1 MGP_C57BL6NJ_G0016115.1 mouse_genomes_project 8 91746301 91752172 - Gm27208 processed_transcript lincRNA MGP_C57BL6NJ_T0018950.1 MGP_C57BL6NJ_G0016115.1 mouse_genomes_project 8 91751689 91752794 - Gm27208 processed_transcript TEC MGP_C57BL6NJ_T0011269.1 MGP_C57BL6NJ_G0009354.1 mouse_genomes_project 8 113505494 113505576 - Mir7075 miRNA miRNA MGP_C57BL6NJ_T0088904.1 MGP_C57BL6NJ_G0033947.1 mouse_genomes_project 8 21348549 21353392 + MGP_C57BL6NJ_P0088904 Dkk4 protein_coding protein_coding MGP_C57BL6NJ_T0088541.1 MGP_C57BL6NJ_G0033814.1 mouse_genomes_project 8 924855 934040 - MGP_C57BL6NJ_P0088541 Cd209b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088542.1 MGP_C57BL6NJ_G0033814.1 mouse_genomes_project 8 924857 934029 - MGP_C57BL6NJ_P0088542 Cd209b protein_coding protein_coding MGP_C57BL6NJ_T0088543.1 MGP_C57BL6NJ_G0033814.1 mouse_genomes_project 8 925806 934029 - MGP_C57BL6NJ_P0088543 Cd209b protein_coding protein_coding MGP_C57BL6NJ_T0088544.1 MGP_C57BL6NJ_G0033814.1 mouse_genomes_project 8 925877 934009 - MGP_C57BL6NJ_P0088544 Cd209b protein_coding protein_coding MGP_C57BL6NJ_T0090975.1 MGP_C57BL6NJ_G0034618.1 mouse_genomes_project 8 117291523 117395694 + MGP_C57BL6NJ_P0090975 Vac14 protein_coding protein_coding MGP_C57BL6NJ_T0089071.1 MGP_C57BL6NJ_G0033994.1 mouse_genomes_project 8 26289992 26294793 - MGP_C57BL6NJ_P0089071 Brf2 protein_coding protein_coding MGP_C57BL6NJ_T0090964.1 MGP_C57BL6NJ_G0034610.1 mouse_genomes_project 8 116597302 116606669 + MGP_C57BL6NJ_P0090964 Tat protein_coding protein_coding MGP_C57BL6NJ_T0090965.1 MGP_C57BL6NJ_G0034610.1 mouse_genomes_project 8 116597371 116601560 + MGP_C57BL6NJ_P0090965 Tat protein_coding protein_coding MGP_C57BL6NJ_T0090249.1 MGP_C57BL6NJ_G0034364.1 mouse_genomes_project 8 88906465 88909724 + MGP_C57BL6NJ_P0090249 Lyl1 protein_coding protein_coding MGP_C57BL6NJ_T0090791.1 MGP_C57BL6NJ_G0034542.1 mouse_genomes_project 8 111753896 111760767 + MGP_C57BL6NJ_P0090791 Hsd11b2 protein_coding protein_coding MGP_C57BL6NJ_T0090362.1 MGP_C57BL6NJ_G0034393.1 mouse_genomes_project 8 89436197 89438494 + MGP_C57BL6NJ_P0090362 Cks1brt protein_coding protein_coding MGP_C57BL6NJ_T0011266.1 MGP_C57BL6NJ_G0009351.1 mouse_genomes_project 8 111523354 111523451 - Mir328 miRNA miRNA MGP_C57BL6NJ_T0089803.1 MGP_C57BL6NJ_G0034219.1 mouse_genomes_project 8 73736212 73739037 + MGP_C57BL6NJ_P0089803 Rab3a protein_coding protein_coding MGP_C57BL6NJ_T0089804.1 MGP_C57BL6NJ_G0034219.1 mouse_genomes_project 8 73736813 73738056 + Rab3a protein_coding retained_intron MGP_C57BL6NJ_T0091222.1 MGP_C57BL6NJ_G0034697.1 mouse_genomes_project 8 128168891 128235311 - MGP_C57BL6NJ_P0091222 Gm27021 protein_coding protein_coding MGP_C57BL6NJ_T0088851.1 MGP_C57BL6NJ_G0033911.1 mouse_genomes_project 8 17248063 17248301 + MGP_C57BL6NJ_P0088851 Defb6 protein_coding protein_coding MGP_C57BL6NJ_T0090973.1 MGP_C57BL6NJ_G0034617.1 mouse_genomes_project 8 116910501 117283252 + MGP_C57BL6NJ_P0090973 Hydin protein_coding protein_coding MGP_C57BL6NJ_T0090974.1 MGP_C57BL6NJ_G0034617.1 mouse_genomes_project 8 116910507 117283056 + MGP_C57BL6NJ_P0090974 Hydin protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100657.1 MGP_C57BL6NJ_G0038703.1 mouse_genomes_project 8 81153450 81153558 - Gm23468 snRNA snRNA MGP_C57BL6NJ_T0090416.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538569 92556835 + MGP_C57BL6NJ_P0090416 Cnep1r1 protein_coding protein_coding MGP_C57BL6NJ_T0090417.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538578 92552583 + Cnep1r1 protein_coding processed_transcript MGP_C57BL6NJ_T0090418.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538587 92556839 + MGP_C57BL6NJ_P0090418 Cnep1r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090419.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538600 92556209 + Cnep1r1 protein_coding retained_intron MGP_C57BL6NJ_T0090420.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538600 92553416 + MGP_C57BL6NJ_P0090420 Cnep1r1 protein_coding protein_coding MGP_C57BL6NJ_T0090421.1 MGP_C57BL6NJ_G0034411.1 mouse_genomes_project 8 92538607 92552799 + MGP_C57BL6NJ_P0090421 Cnep1r1 protein_coding protein_coding MGP_C57BL6NJ_T0005560.1 MGP_C57BL6NJ_G0004708.1 mouse_genomes_project 8 129512070 129513018 + Gm20406 antisense antisense MGP_C57BL6NJ_T0088869.1 MGP_C57BL6NJ_G0033927.1 mouse_genomes_project 8 20500015 20505027 + MGP_C57BL6NJ_P0088869 Defb10 protein_coding protein_coding MGP_C57BL6NJ_T0100671.1 MGP_C57BL6NJ_G0038717.1 mouse_genomes_project 8 113414376 113414486 - Gm22085 snRNA snRNA MGP_C57BL6NJ_T0089737.1 MGP_C57BL6NJ_G0034200.1 mouse_genomes_project 8 73318480 73380489 - Crtc1 protein_coding retained_intron MGP_C57BL6NJ_T0089738.1 MGP_C57BL6NJ_G0034200.1 mouse_genomes_project 8 73318480 73380489 - MGP_C57BL6NJ_P0089738 Crtc1 protein_coding protein_coding MGP_C57BL6NJ_T0089739.1 MGP_C57BL6NJ_G0034200.1 mouse_genomes_project 8 73333826 73338870 - Crtc1 protein_coding retained_intron MGP_C57BL6NJ_T0089740.1 MGP_C57BL6NJ_G0034200.1 mouse_genomes_project 8 73340920 73380485 - Crtc1 protein_coding retained_intron MGP_C57BL6NJ_T0089741.1 MGP_C57BL6NJ_G0034200.1 mouse_genomes_project 8 73342198 73372159 - Crtc1 protein_coding processed_transcript MGP_C57BL6NJ_T0088877.1 MGP_C57BL6NJ_G0033934.1 mouse_genomes_project 8 20670327 20751176 - MGP_C57BL6NJ_P0088877 Atp7b protein_coding protein_coding MGP_C57BL6NJ_T0088878.1 MGP_C57BL6NJ_G0033934.1 mouse_genomes_project 8 20672186 20750890 - MGP_C57BL6NJ_P0088878 Atp7b protein_coding protein_coding MGP_C57BL6NJ_T0090462.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95757888 95776995 - MGP_C57BL6NJ_P0090462 Aktip protein_coding protein_coding MGP_C57BL6NJ_T0090466.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95769346 95780282 - MGP_C57BL6NJ_P0090466 Aktip protein_coding protein_coding MGP_C57BL6NJ_T0090467.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95769346 95779759 - MGP_C57BL6NJ_P0090467 Aktip protein_coding protein_coding MGP_C57BL6NJ_T0090468.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95770316 95779840 - MGP_C57BL6NJ_P0090468 Aktip protein_coding protein_coding MGP_C57BL6NJ_T0090469.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95770478 95779844 - MGP_C57BL6NJ_P0090469 Aktip protein_coding protein_coding MGP_C57BL6NJ_T0090470.1 MGP_C57BL6NJ_G0034426.1 mouse_genomes_project 8 95776928 95777754 - Aktip protein_coding processed_transcript MGP_C57BL6NJ_T0089188.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40736996 40808505 + MGP_C57BL6NJ_P0089188 Zdhhc2 protein_coding protein_coding MGP_C57BL6NJ_T0089189.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40737002 40838857 + MGP_C57BL6NJ_P0089189 Zdhhc2 protein_coding protein_coding MGP_C57BL6NJ_T0089190.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40737003 40790105 + Zdhhc2 protein_coding retained_intron MGP_C57BL6NJ_T0089191.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40737021 40807049 + MGP_C57BL6NJ_P0089191 Zdhhc2 protein_coding protein_coding MGP_C57BL6NJ_T0089192.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40737285 40777198 + Zdhhc2 protein_coding processed_transcript MGP_C57BL6NJ_T0089201.1 MGP_C57BL6NJ_G0034044.1 mouse_genomes_project 8 40829061 40838859 + Zdhhc2 protein_coding processed_transcript MGP_C57BL6NJ_T0091001.1 MGP_C57BL6NJ_G0034623.1 mouse_genomes_project 8 117570117 117591408 - MGP_C57BL6NJ_P0091001 Fuk protein_coding protein_coding MGP_C57BL6NJ_T0089168.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36541740 36717409 - MGP_C57BL6NJ_P0089168 Dlc1 protein_coding protein_coding MGP_C57BL6NJ_T0089169.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36541740 36590423 - MGP_C57BL6NJ_P0089169 Dlc1 protein_coding protein_coding MGP_C57BL6NJ_T0089170.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36544226 36952676 - MGP_C57BL6NJ_P0089170 Dlc1 protein_coding protein_coding MGP_C57BL6NJ_T0089171.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36546122 36551223 - Dlc1 protein_coding retained_intron MGP_C57BL6NJ_T0089172.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36568294 36590354 - Dlc1 protein_coding retained_intron MGP_C57BL6NJ_T0089173.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36837716 36952591 - Dlc1 protein_coding retained_intron MGP_C57BL6NJ_T0089174.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36847599 36952656 - Dlc1 protein_coding retained_intron MGP_C57BL6NJ_T0089175.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36935837 36952670 - Dlc1 protein_coding retained_intron MGP_C57BL6NJ_T0089176.1 MGP_C57BL6NJ_G0034037.1 mouse_genomes_project 8 36938808 36953377 - MGP_C57BL6NJ_P0089176 Dlc1 protein_coding protein_coding MGP_C57BL6NJ_T0090833.1 MGP_C57BL6NJ_G0034564.1 mouse_genomes_project 8 112240368 112262915 - MGP_C57BL6NJ_P0090833 Slc12a4 protein_coding protein_coding MGP_C57BL6NJ_T0090834.1 MGP_C57BL6NJ_G0034564.1 mouse_genomes_project 8 112240368 112262986 - MGP_C57BL6NJ_P0090834 Slc12a4 protein_coding protein_coding MGP_C57BL6NJ_T0090835.1 MGP_C57BL6NJ_G0034564.1 mouse_genomes_project 8 112243433 112244916 - Slc12a4 protein_coding retained_intron MGP_C57BL6NJ_T0090836.1 MGP_C57BL6NJ_G0034564.1 mouse_genomes_project 8 112250617 112261291 - MGP_C57BL6NJ_P0090836 Slc12a4 protein_coding protein_coding MGP_C57BL6NJ_T0090837.1 MGP_C57BL6NJ_G0034564.1 mouse_genomes_project 8 112257166 112262945 - Slc12a4 protein_coding retained_intron MGP_C57BL6NJ_T0005551.1 MGP_C57BL6NJ_G0004699.1 mouse_genomes_project 8 119458293 119474317 - Gm26994 antisense antisense MGP_C57BL6NJ_T0089329.1 MGP_C57BL6NJ_G0034080.1 mouse_genomes_project 8 46950407 46968680 + MGP_C57BL6NJ_P0089329 Cfap97 protein_coding protein_coding MGP_C57BL6NJ_T0089330.1 MGP_C57BL6NJ_G0034080.1 mouse_genomes_project 8 46962415 46969284 + Cfap97 protein_coding processed_transcript MGP_C57BL6NJ_T0089331.1 MGP_C57BL6NJ_G0034080.1 mouse_genomes_project 8 46962438 46968929 + MGP_C57BL6NJ_P0089331 Cfap97 protein_coding protein_coding MGP_C57BL6NJ_T0089332.1 MGP_C57BL6NJ_G0034080.1 mouse_genomes_project 8 46962458 46994321 + MGP_C57BL6NJ_P0089332 Cfap97 protein_coding protein_coding MGP_C57BL6NJ_T0089333.1 MGP_C57BL6NJ_G0034080.1 mouse_genomes_project 8 46962762 46994329 + MGP_C57BL6NJ_P0089333 Cfap97 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090889.1 MGP_C57BL6NJ_G0034586.1 mouse_genomes_project 8 113451437 113453926 - MGP_C57BL6NJ_P0090889 Pdf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090892.1 MGP_C57BL6NJ_G0034586.1 mouse_genomes_project 8 113453259 113455321 - MGP_C57BL6NJ_P0090892 Pdf protein_coding protein_coding MGP_C57BL6NJ_T0016469.1 MGP_C57BL6NJ_G0014514.1 mouse_genomes_project 8 100615050 100617154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089091.1 MGP_C57BL6NJ_G0034005.1 mouse_genomes_project 8 30568501 30589159 + MGP_C57BL6NJ_P0089091 Rnf122 protein_coding protein_coding MGP_C57BL6NJ_T0089092.1 MGP_C57BL6NJ_G0034005.1 mouse_genomes_project 8 30568511 30578778 + Rnf122 protein_coding retained_intron MGP_C57BL6NJ_T0089093.1 MGP_C57BL6NJ_G0034005.1 mouse_genomes_project 8 30568829 30587342 + MGP_C57BL6NJ_P0089093 Rnf122 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088865.1 MGP_C57BL6NJ_G0033923.1 mouse_genomes_project 8 19547634 20006567 - MGP_C57BL6NJ_P0088865 protein_coding protein_coding MGP_C57BL6NJ_T0090886.1 MGP_C57BL6NJ_G0034585.1 mouse_genomes_project 8 113437242 113452501 + MGP_C57BL6NJ_P0090886 Vps4a protein_coding protein_coding MGP_C57BL6NJ_T0090887.1 MGP_C57BL6NJ_G0034585.1 mouse_genomes_project 8 113445758 113449427 + Vps4a protein_coding retained_intron MGP_C57BL6NJ_T0090888.1 MGP_C57BL6NJ_G0034585.1 mouse_genomes_project 8 113448994 113449846 + Vps4a protein_coding retained_intron MGP_C57BL6NJ_T0089240.1 MGP_C57BL6NJ_G0034056.1 mouse_genomes_project 8 41700278 41736906 - MGP_C57BL6NJ_P0089240 Asah1 protein_coding protein_coding MGP_C57BL6NJ_T0089241.1 MGP_C57BL6NJ_G0034056.1 mouse_genomes_project 8 41700742 41710119 - Asah1 protein_coding retained_intron MGP_C57BL6NJ_T0089242.1 MGP_C57BL6NJ_G0034056.1 mouse_genomes_project 8 41701391 41703938 - Asah1 protein_coding retained_intron MGP_C57BL6NJ_T0089243.1 MGP_C57BL6NJ_G0034056.1 mouse_genomes_project 8 41706261 41736768 - MGP_C57BL6NJ_P0089243 Asah1 protein_coding protein_coding MGP_C57BL6NJ_T0089244.1 MGP_C57BL6NJ_G0034056.1 mouse_genomes_project 8 41714106 41736906 - MGP_C57BL6NJ_P0089244 Asah1 protein_coding protein_coding MGP_C57BL6NJ_T0005487.1 MGP_C57BL6NJ_G0004649.1 mouse_genomes_project 8 8955321 8974061 - Gm15419 antisense antisense MGP_C57BL6NJ_T0088925.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21728651 21910722 + MGP_C57BL6NJ_P0088925 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088926.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21728689 21911283 + MGP_C57BL6NJ_P0088926 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088927.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21728943 21909096 + MGP_C57BL6NJ_P0088927 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088928.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21791705 21909579 + MGP_C57BL6NJ_P0088928 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088929.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21791734 21910070 + MGP_C57BL6NJ_P0088929 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088930.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21791837 21910070 + MGP_C57BL6NJ_P0088930 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088931.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21818109 21911286 + MGP_C57BL6NJ_P0088931 Ank1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088932.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21818125 21911286 + MGP_C57BL6NJ_P0088932 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088933.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21818161 21911286 + MGP_C57BL6NJ_P0088933 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088934.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21818375 21910477 + MGP_C57BL6NJ_P0088934 Ank1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088935.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21818375 21910477 + MGP_C57BL6NJ_P0088935 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088936.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21855280 21884474 + MGP_C57BL6NJ_P0088936 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088937.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21881784 21887877 + Ank1 protein_coding retained_intron MGP_C57BL6NJ_T0088938.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21899860 21910068 + MGP_C57BL6NJ_P0088938 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088939.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21899935 21909483 + MGP_C57BL6NJ_P0088939 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088940.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21900107 21909094 + MGP_C57BL6NJ_P0088940 Ank1 protein_coding protein_coding MGP_C57BL6NJ_T0088941.1 MGP_C57BL6NJ_G0033953.1 mouse_genomes_project 8 21900923 21909158 + Ank1 protein_coding retained_intron MGP_C57BL6NJ_T0100672.1 MGP_C57BL6NJ_G0038718.1 mouse_genomes_project 8 116424951 116425053 - Gm25321 snRNA snRNA MGP_C57BL6NJ_T0090366.1 MGP_C57BL6NJ_G0034397.1 mouse_genomes_project 8 89595544 89632361 - MGP_C57BL6NJ_P0090366 Mylk3 protein_coding protein_coding MGP_C57BL6NJ_T0090367.1 MGP_C57BL6NJ_G0034397.1 mouse_genomes_project 8 89595688 89648013 - MGP_C57BL6NJ_P0090367 Mylk3 protein_coding protein_coding MGP_C57BL6NJ_T0090368.1 MGP_C57BL6NJ_G0034397.1 mouse_genomes_project 8 89598294 89632384 - MGP_C57BL6NJ_P0090368 Mylk3 protein_coding protein_coding MGP_C57BL6NJ_T0090369.1 MGP_C57BL6NJ_G0034397.1 mouse_genomes_project 8 89626284 89653380 - MGP_C57BL6NJ_P0090369 Mylk3 protein_coding protein_coding MGP_C57BL6NJ_T0090370.1 MGP_C57BL6NJ_G0034397.1 mouse_genomes_project 8 89627461 89648069 - Mylk3 protein_coding retained_intron MGP_C57BL6NJ_T0090811.1 MGP_C57BL6NJ_G0034551.1 mouse_genomes_project 8 111978995 111980949 + MGP_C57BL6NJ_P0090811 4933405L10Rik protein_coding protein_coding MGP_C57BL6NJ_T0088622.1 MGP_C57BL6NJ_G0033837.1 mouse_genomes_project 8 6585199 7204316 - MGP_C57BL6NJ_P0088622 Fam155a protein_coding protein_coding MGP_C57BL6NJ_T0091462.1 MGP_C57BL6NJ_G0034754.1 mouse_genomes_project 8 131717713 131747958 + MGP_C57BL6NJ_P0091462 Rab4a protein_coding protein_coding MGP_C57BL6NJ_T0091463.1 MGP_C57BL6NJ_G0034754.1 mouse_genomes_project 8 131717796 131747156 + MGP_C57BL6NJ_P0091463 Rab4a protein_coding protein_coding MGP_C57BL6NJ_T0091517.1 MGP_C57BL6NJ_G0034777.1 mouse_genomes_project 8 133037885 133063954 + MGP_C57BL6NJ_P0091517 Tsnax protein_coding protein_coding MGP_C57BL6NJ_T0089890.1 MGP_C57BL6NJ_G0034248.1 mouse_genomes_project 8 74679359 74682533 - MGP_C57BL6NJ_P0089890 Bst2 protein_coding protein_coding MGP_C57BL6NJ_T0088987.1 MGP_C57BL6NJ_G0033971.1 mouse_genomes_project 8 23984680 24059033 - MGP_C57BL6NJ_P0088987 Plekha2 protein_coding protein_coding MGP_C57BL6NJ_T0088988.1 MGP_C57BL6NJ_G0033971.1 mouse_genomes_project 8 23986375 24058824 - MGP_C57BL6NJ_P0088988 Plekha2 protein_coding protein_coding MGP_C57BL6NJ_T0088989.1 MGP_C57BL6NJ_G0033971.1 mouse_genomes_project 8 23988471 24058611 - MGP_C57BL6NJ_P0088989 Plekha2 protein_coding protein_coding MGP_C57BL6NJ_T0088990.1 MGP_C57BL6NJ_G0033971.1 mouse_genomes_project 8 24017742 24047676 - MGP_C57BL6NJ_P0088990 Plekha2 protein_coding protein_coding MGP_C57BL6NJ_T0011975.1 MGP_C57BL6NJ_G0010060.1 mouse_genomes_project 8 4804825 4805027 + Gm27545 misc_RNA misc_RNA MGP_C57BL6NJ_T0089345.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47387042 47418299 + MGP_C57BL6NJ_P0089345 Cenpu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089346.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47387047 47417876 + MGP_C57BL6NJ_P0089346 Cenpu protein_coding protein_coding MGP_C57BL6NJ_T0089347.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47387048 47391392 + Cenpu protein_coding retained_intron MGP_C57BL6NJ_T0089348.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47387074 47416660 + MGP_C57BL6NJ_P0089348 Cenpu protein_coding protein_coding MGP_C57BL6NJ_T0089349.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47395232 47397591 + Cenpu protein_coding processed_transcript MGP_C57BL6NJ_T0089350.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47396861 47411122 + Cenpu protein_coding retained_intron MGP_C57BL6NJ_T0089351.1 MGP_C57BL6NJ_G0034084.1 mouse_genomes_project 8 47411464 47416670 + Cenpu protein_coding retained_intron MGP_C57BL6NJ_T0089551.1 MGP_C57BL6NJ_G0034147.1 mouse_genomes_project 8 69080205 69082226 + MGP_C57BL6NJ_P0089551 Tktl2 protein_coding protein_coding MGP_C57BL6NJ_T0089552.1 MGP_C57BL6NJ_G0034147.1 mouse_genomes_project 8 69080208 69086791 + MGP_C57BL6NJ_P0089552 Tktl2 protein_coding protein_coding MGP_C57BL6NJ_T0089530.1 MGP_C57BL6NJ_G0034141.1 mouse_genomes_project 8 67434881 67440877 - MGP_C57BL6NJ_P0089530 Trim75 protein_coding protein_coding MGP_C57BL6NJ_T0088566.1 MGP_C57BL6NJ_G0033819.1 mouse_genomes_project 8 1232823 1239965 - MGP_C57BL6NJ_P0088566 Prr36 protein_coding protein_coding MGP_C57BL6NJ_T0088567.1 MGP_C57BL6NJ_G0033819.1 mouse_genomes_project 8 1237701 1239565 - MGP_C57BL6NJ_P0088567 Prr36 protein_coding protein_coding MGP_C57BL6NJ_T0088568.1 MGP_C57BL6NJ_G0033819.1 mouse_genomes_project 8 1238624 1239805 - MGP_C57BL6NJ_P0088568 Prr36 protein_coding protein_coding MGP_C57BL6NJ_T0088569.1 MGP_C57BL6NJ_G0033819.1 mouse_genomes_project 8 1239060 1240112 - MGP_C57BL6NJ_P0088569 Prr36 protein_coding protein_coding MGP_C57BL6NJ_T0016417.1 MGP_C57BL6NJ_G0014462.1 mouse_genomes_project 8 19543896 19544164 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090450.1 MGP_C57BL6NJ_G0034420.1 mouse_genomes_project 8 93539037 93562080 - MGP_C57BL6NJ_P0090450 Sall1 protein_coding protein_coding MGP_C57BL6NJ_T0088839.1 MGP_C57BL6NJ_G0033900.1 mouse_genomes_project 8 16989459 16992776 - MGP_C57BL6NJ_P0088839 Defb40 protein_coding protein_coding MGP_C57BL6NJ_T0101916.1 MGP_C57BL6NJ_G0039962.1 mouse_genomes_project 8 16474449 16474580 - Gm24469 snoRNA snoRNA MGP_C57BL6NJ_T0090604.1 MGP_C57BL6NJ_G0034471.1 mouse_genomes_project 8 99886270 99906468 + MGP_C57BL6NJ_P0090604 Adgrg5 protein_coding protein_coding MGP_C57BL6NJ_T0090605.1 MGP_C57BL6NJ_G0034471.1 mouse_genomes_project 8 99886270 99906478 + MGP_C57BL6NJ_P0090605 Adgrg5 protein_coding protein_coding MGP_C57BL6NJ_T0090606.1 MGP_C57BL6NJ_G0034471.1 mouse_genomes_project 8 99886270 99897252 + MGP_C57BL6NJ_P0090606 Adgrg5 protein_coding protein_coding MGP_C57BL6NJ_T0090607.1 MGP_C57BL6NJ_G0034471.1 mouse_genomes_project 8 99886275 99906468 + MGP_C57BL6NJ_P0090607 Adgrg5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090608.1 MGP_C57BL6NJ_G0034471.1 mouse_genomes_project 8 99896902 99897820 + Adgrg5 protein_coding processed_transcript MGP_C57BL6NJ_T0091069.1 MGP_C57BL6NJ_G0034644.1 mouse_genomes_project 8 118782622 118797371 + MGP_C57BL6NJ_P0091069 Gabarapl2 protein_coding protein_coding MGP_C57BL6NJ_T0091070.1 MGP_C57BL6NJ_G0034644.1 mouse_genomes_project 8 118782677 118783691 + Gabarapl2 protein_coding retained_intron MGP_C57BL6NJ_T0018945.1 MGP_C57BL6NJ_G0016113.1 mouse_genomes_project 8 89052031 89053259 + 1700122E12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018946.1 MGP_C57BL6NJ_G0016113.1 mouse_genomes_project 8 89052281 89053060 + 1700122E12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0089367.1 MGP_C57BL6NJ_G0034090.1 mouse_genomes_project 8 48318157 48320388 + MGP_C57BL6NJ_P0089367 protein_coding protein_coding MGP_C57BL6NJ_T0091058.1 MGP_C57BL6NJ_G0034636.1 mouse_genomes_project 8 118414238 118419041 - Ldhd protein_coding retained_intron MGP_C57BL6NJ_T0091059.1 MGP_C57BL6NJ_G0034636.1 mouse_genomes_project 8 118415956 118420789 - Ldhd protein_coding retained_intron MGP_C57BL6NJ_T0091060.1 MGP_C57BL6NJ_G0034636.1 mouse_genomes_project 8 118416724 118420828 - MGP_C57BL6NJ_P0091060 Ldhd protein_coding protein_coding MGP_C57BL6NJ_T0089999.1 MGP_C57BL6NJ_G0034286.1 mouse_genomes_project 8 76023347 76025342 + MGP_C57BL6NJ_P0089999 F2rl3 protein_coding protein_coding MGP_C57BL6NJ_T0090819.1 MGP_C57BL6NJ_G0034557.1 mouse_genomes_project 8 112151041 112173917 + MGP_C57BL6NJ_P0090819 Nutf2-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0089959.1 MGP_C57BL6NJ_G0034268.1 mouse_genomes_project 8 75336706 75340158 + MGP_C57BL6NJ_P0089959 Olfr374 protein_coding protein_coding MGP_C57BL6NJ_T0089761.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73456187 73473101 - MGP_C57BL6NJ_P0089761 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089765.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73456380 73477856 - MGP_C57BL6NJ_P0089765 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089766.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73461322 73473118 - MGP_C57BL6NJ_P0089766 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089767.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73461530 73473217 - MGP_C57BL6NJ_P0089767 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089768.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73462053 73473118 - MGP_C57BL6NJ_P0089768 Kxd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089769.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73462616 73477856 - MGP_C57BL6NJ_P0089769 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089770.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73463321 73473028 - MGP_C57BL6NJ_P0089770 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089771.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73468291 73477683 - MGP_C57BL6NJ_P0089771 Kxd1 protein_coding protein_coding MGP_C57BL6NJ_T0089772.1 MGP_C57BL6NJ_G0034206.1 mouse_genomes_project 8 73469008 73473042 - Kxd1 protein_coding retained_intron MGP_C57BL6NJ_T0089983.1 MGP_C57BL6NJ_G0034280.1 mouse_genomes_project 8 75749175 75762469 - MGP_C57BL6NJ_P0089983 Slc35e1 protein_coding protein_coding MGP_C57BL6NJ_T0089984.1 MGP_C57BL6NJ_G0034280.1 mouse_genomes_project 8 75753108 75762072 - MGP_C57BL6NJ_P0089984 Slc35e1 protein_coding protein_coding MGP_C57BL6NJ_T0090431.1 MGP_C57BL6NJ_G0034414.1 mouse_genomes_project 8 92713549 92777689 + MGP_C57BL6NJ_P0090431 Adcy7 protein_coding protein_coding MGP_C57BL6NJ_T0090432.1 MGP_C57BL6NJ_G0034414.1 mouse_genomes_project 8 92725968 92777689 + MGP_C57BL6NJ_P0090432 Adcy7 protein_coding protein_coding MGP_C57BL6NJ_T0090433.1 MGP_C57BL6NJ_G0034414.1 mouse_genomes_project 8 92732050 92777689 + MGP_C57BL6NJ_P0090433 Adcy7 protein_coding protein_coding MGP_C57BL6NJ_T0090434.1 MGP_C57BL6NJ_G0034414.1 mouse_genomes_project 8 92737188 92777689 + MGP_C57BL6NJ_P0090434 Adcy7 protein_coding protein_coding MGP_C57BL6NJ_T0089560.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70346380 70642367 - MGP_C57BL6NJ_P0089560 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089561.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70346380 70642367 - MGP_C57BL6NJ_P0089561 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089562.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70346387 70478671 - MGP_C57BL6NJ_P0089562 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089563.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70353345 70642367 - MGP_C57BL6NJ_P0089563 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089564.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70354179 70576319 - MGP_C57BL6NJ_P0089564 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089565.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70368824 70478609 - MGP_C57BL6NJ_P0089565 Psd3 protein_coding protein_coding MGP_C57BL6NJ_T0089566.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70448186 70733204 - Psd3 protein_coding retained_intron MGP_C57BL6NJ_T0089567.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70540545 70569507 - Psd3 protein_coding processed_transcript MGP_C57BL6NJ_T0089568.1 MGP_C57BL6NJ_G0034154.1 mouse_genomes_project 8 70569034 70618719 - Psd3 protein_coding retained_intron MGP_C57BL6NJ_T0091472.1 MGP_C57BL6NJ_G0034761.1 mouse_genomes_project 8 131965578 131993094 + MGP_C57BL6NJ_P0091472 Urb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091473.1 MGP_C57BL6NJ_G0034761.1 mouse_genomes_project 8 131965613 131993095 + MGP_C57BL6NJ_P0091473 Urb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089744.1 MGP_C57BL6NJ_G0034202.1 mouse_genomes_project 8 73427256 73430739 - MGP_C57BL6NJ_P0089744 Tmem59l protein_coding protein_coding MGP_C57BL6NJ_T0089193.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40819562 40830950 - MGP_C57BL6NJ_P0089193 Cnot7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089194.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40819562 40840345 - MGP_C57BL6NJ_P0089194 Cnot7 protein_coding protein_coding MGP_C57BL6NJ_T0089195.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40819564 40844438 - MGP_C57BL6NJ_P0089195 Cnot7 protein_coding protein_coding MGP_C57BL6NJ_T0089196.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40819565 40840309 - Cnot7 protein_coding retained_intron MGP_C57BL6NJ_T0089197.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40819569 40840309 - MGP_C57BL6NJ_P0089197 Cnot7 protein_coding protein_coding MGP_C57BL6NJ_T0089198.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40820058 40839895 - MGP_C57BL6NJ_P0089198 Cnot7 protein_coding protein_coding MGP_C57BL6NJ_T0089199.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40821036 40829671 - Cnot7 protein_coding processed_transcript MGP_C57BL6NJ_T0089200.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40822619 40836267 - Cnot7 protein_coding retained_intron MGP_C57BL6NJ_T0089202.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40829331 40836184 - Cnot7 protein_coding processed_transcript MGP_C57BL6NJ_T0089203.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40835916 40840313 - Cnot7 protein_coding processed_transcript MGP_C57BL6NJ_T0089204.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40838613 40844426 - Cnot7 protein_coding processed_transcript MGP_C57BL6NJ_T0089205.1 MGP_C57BL6NJ_G0034045.1 mouse_genomes_project 8 40838693 40839895 - Cnot7 protein_coding processed_transcript MGP_C57BL6NJ_T0005567.1 MGP_C57BL6NJ_G0004714.1 mouse_genomes_project 8 132288085 132296028 - Gm15775 antisense antisense MGP_C57BL6NJ_T0100681.1 MGP_C57BL6NJ_G0038727.1 mouse_genomes_project 8 130800990 130801097 - Gm24445 snRNA snRNA MGP_C57BL6NJ_T0089099.1 MGP_C57BL6NJ_G0034009.1 mouse_genomes_project 8 31277508 31280218 - MGP_C57BL6NJ_P0089099 protein_coding protein_coding MGP_C57BL6NJ_T0088991.1 MGP_C57BL6NJ_G0033972.1 mouse_genomes_project 8 24117719 24164611 - MGP_C57BL6NJ_P0088991 Tacc1 protein_coding protein_coding MGP_C57BL6NJ_T0088992.1 MGP_C57BL6NJ_G0033972.1 mouse_genomes_project 8 24117719 24164611 - MGP_C57BL6NJ_P0088992 Tacc1 protein_coding protein_coding MGP_C57BL6NJ_T0088487.1 MGP_C57BL6NJ_G0033797.1 mouse_genomes_project 8 443984 448055 + MGP_C57BL6NJ_P0088487 Zfp358 protein_coding protein_coding MGP_C57BL6NJ_T0088472.1 MGP_C57BL6NJ_G0033792.1 mouse_genomes_project 8 55683 192168 - MGP_C57BL6NJ_P0088472 Insr protein_coding protein_coding MGP_C57BL6NJ_T0088473.1 MGP_C57BL6NJ_G0033792.1 mouse_genomes_project 8 120376 192102 - Insr protein_coding retained_intron MGP_C57BL6NJ_T0011258.1 MGP_C57BL6NJ_G0009343.1 mouse_genomes_project 8 97700116 97700174 - Gm22151 miRNA miRNA MGP_C57BL6NJ_T0090555.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99392721 99449905 + MGP_C57BL6NJ_P0090555 Nlrc5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090556.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99392721 99451285 + MGP_C57BL6NJ_P0090556 Nlrc5 protein_coding protein_coding MGP_C57BL6NJ_T0090557.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99392721 99446913 + MGP_C57BL6NJ_P0090557 Nlrc5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090558.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99396084 99429153 + Nlrc5 protein_coding retained_intron MGP_C57BL6NJ_T0090559.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99403517 99413068 + MGP_C57BL6NJ_P0090559 Nlrc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090560.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99445107 99447186 + Nlrc5 protein_coding retained_intron MGP_C57BL6NJ_T0090561.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99449079 99451281 + Nlrc5 protein_coding retained_intron MGP_C57BL6NJ_T0090562.1 MGP_C57BL6NJ_G0034457.1 mouse_genomes_project 8 99449079 99451277 + MGP_C57BL6NJ_P0090562 Nlrc5 protein_coding protein_coding MGP_C57BL6NJ_T0011256.1 MGP_C57BL6NJ_G0009341.1 mouse_genomes_project 8 93536529 93536623 + Mir8110 miRNA miRNA MGP_C57BL6NJ_T0005491.1 MGP_C57BL6NJ_G0004652.1 mouse_genomes_project 8 10537362 10554284 - Gm15347 antisense antisense MGP_C57BL6NJ_T0089394.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49273968 49476613 - MGP_C57BL6NJ_P0089394 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0089395.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49275984 49932539 - MGP_C57BL6NJ_P0089395 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0089396.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49276007 49749397 - MGP_C57BL6NJ_P0089396 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0089397.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49327622 49351799 - Tenm3 protein_coding processed_transcript MGP_C57BL6NJ_T0089398.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49386966 49619594 - MGP_C57BL6NJ_P0089398 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0089399.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49453458 49619940 - MGP_C57BL6NJ_P0089399 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0089400.1 MGP_C57BL6NJ_G0034101.1 mouse_genomes_project 8 49453458 49619747 - MGP_C57BL6NJ_P0089400 Tenm3 protein_coding protein_coding MGP_C57BL6NJ_T0100664.1 MGP_C57BL6NJ_G0038710.1 mouse_genomes_project 8 94136934 94137041 - Gm26331 snRNA snRNA MGP_C57BL6NJ_T0018922.1 MGP_C57BL6NJ_G0016106.1 mouse_genomes_project 8 45755066 45760920 - AY512931 processed_transcript processed_transcript MGP_C57BL6NJ_T0089623.1 MGP_C57BL6NJ_G0034172.1 mouse_genomes_project 8 72665793 72682387 + MGP_C57BL6NJ_P0089623 Atp13a1 protein_coding protein_coding MGP_C57BL6NJ_T0089867.1 MGP_C57BL6NJ_G0034242.1 mouse_genomes_project 8 74595580 74602538 - MGP_C57BL6NJ_P0089867 Abhd8 protein_coding protein_coding MGP_C57BL6NJ_T0089795.1 MGP_C57BL6NJ_G0034216.1 mouse_genomes_project 8 73661759 73662302 - MGP_C57BL6NJ_P0089795 protein_coding protein_coding MGP_C57BL6NJ_T0090495.1 MGP_C57BL6NJ_G0034436.1 mouse_genomes_project 8 97813238 97842020 - MGP_C57BL6NJ_P0090495 Ces1a protein_coding protein_coding MGP_C57BL6NJ_T0090982.1 MGP_C57BL6NJ_G0034620.1 mouse_genomes_project 8 117418308 117419178 - Il34 protein_coding processed_transcript MGP_C57BL6NJ_T0090983.1 MGP_C57BL6NJ_G0034620.1 mouse_genomes_project 8 117418319 117490525 - MGP_C57BL6NJ_P0090983 Il34 protein_coding protein_coding MGP_C57BL6NJ_T0090984.1 MGP_C57BL6NJ_G0034620.1 mouse_genomes_project 8 117418319 117490494 - MGP_C57BL6NJ_P0090984 Il34 protein_coding protein_coding MGP_C57BL6NJ_T0090985.1 MGP_C57BL6NJ_G0034620.1 mouse_genomes_project 8 117431715 117472877 - Il34 protein_coding processed_transcript MGP_C57BL6NJ_T0090986.1 MGP_C57BL6NJ_G0034620.1 mouse_genomes_project 8 117432004 117490546 - Il34 protein_coding processed_transcript MGP_C57BL6NJ_T0005507.1 MGP_C57BL6NJ_G0004663.1 mouse_genomes_project 8 25154652 25177438 + 1700047A11Rik antisense antisense MGP_C57BL6NJ_T0005508.1 MGP_C57BL6NJ_G0004663.1 mouse_genomes_project 8 25154659 25161340 + 1700047A11Rik antisense antisense MGP_C57BL6NJ_T0088545.1 MGP_C57BL6NJ_G0033815.1 mouse_genomes_project 8 944479 950380 - MGP_C57BL6NJ_P0088545 Cd209c protein_coding protein_coding MGP_C57BL6NJ_T0088546.1 MGP_C57BL6NJ_G0033815.1 mouse_genomes_project 8 944551 953887 - MGP_C57BL6NJ_P0088546 Cd209c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090379.1 MGP_C57BL6NJ_G0034401.1 mouse_genomes_project 8 89929395 89982596 - MGP_C57BL6NJ_P0090379 Neto2 protein_coding protein_coding MGP_C57BL6NJ_T0090380.1 MGP_C57BL6NJ_G0034401.1 mouse_genomes_project 8 89929522 89992297 - MGP_C57BL6NJ_P0090380 Neto2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088874.1 MGP_C57BL6NJ_G0033932.1 mouse_genomes_project 8 20642163 20647753 + MGP_C57BL6NJ_P0088874 Fam90a1a protein_coding protein_coding MGP_C57BL6NJ_T0100653.1 MGP_C57BL6NJ_G0038699.1 mouse_genomes_project 8 69815387 69815511 - Gm24274 snRNA snRNA MGP_C57BL6NJ_T0009295.1 MGP_C57BL6NJ_G0007474.1 mouse_genomes_project 8 59420325 59443862 + 2500002B13Rik lincRNA lincRNA MGP_C57BL6NJ_T0088540.1 MGP_C57BL6NJ_G0033813.1 mouse_genomes_project 8 890283 897036 - MGP_C57BL6NJ_P0088540 Cd209d protein_coding protein_coding MGP_C57BL6NJ_T0089813.1 MGP_C57BL6NJ_G0034223.1 mouse_genomes_project 8 73758466 73772782 - MGP_C57BL6NJ_P0089813 Mast3 protein_coding protein_coding MGP_C57BL6NJ_T0091545.1 MGP_C57BL6NJ_G0034785.1 mouse_genomes_project 8 134428086 134537063 + MGP_C57BL6NJ_P0091545 Slc35f3 protein_coding protein_coding MGP_C57BL6NJ_T0091402.1 MGP_C57BL6NJ_G0034739.1 mouse_genomes_project 8 131054215 131065090 + MGP_C57BL6NJ_P0091402 Spata33 protein_coding protein_coding MGP_C57BL6NJ_T0011289.1 MGP_C57BL6NJ_G0009374.1 mouse_genomes_project 8 130963155 130963222 + Mir7080 miRNA miRNA MGP_C57BL6NJ_T0101952.1 MGP_C57BL6NJ_G0039998.1 mouse_genomes_project 8 90553023 90553147 + Gm23904 snoRNA snoRNA MGP_C57BL6NJ_T0098901.1 MGP_C57BL6NJ_G0036965.1 mouse_genomes_project 8 83450006 83450565 - pseudogene pseudogene MGP_C57BL6NJ_T0011235.1 MGP_C57BL6NJ_G0009320.1 mouse_genomes_project 8 75736821 75736895 - Mir7068 miRNA miRNA MGP_C57BL6NJ_T0089214.1 MGP_C57BL6NJ_G0034049.1 mouse_genomes_project 8 41095316 41171395 + MGP_C57BL6NJ_P0089214 protein_coding protein_coding MGP_C57BL6NJ_T0088507.1 MGP_C57BL6NJ_G0033803.1 mouse_genomes_project 8 608740 611487 + MGP_C57BL6NJ_P0088507 Pet100 protein_coding protein_coding MGP_C57BL6NJ_T0090295.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89121309 89152133 - MGP_C57BL6NJ_P0090295 Mast1 protein_coding protein_coding MGP_C57BL6NJ_T0090296.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89121312 89136923 - Mast1 protein_coding retained_intron MGP_C57BL6NJ_T0090297.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89121314 89152139 - MGP_C57BL6NJ_P0090297 Mast1 protein_coding protein_coding MGP_C57BL6NJ_T0090299.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89133931 89138555 - Mast1 protein_coding retained_intron MGP_C57BL6NJ_T0090300.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89136537 89141709 - Mast1 protein_coding retained_intron MGP_C57BL6NJ_T0090301.1 MGP_C57BL6NJ_G0034376.1 mouse_genomes_project 8 89149703 89152124 - Mast1 protein_coding retained_intron MGP_C57BL6NJ_T0011971.1 MGP_C57BL6NJ_G0010056.1 mouse_genomes_project 8 725674 725987 - Gm23886 misc_RNA misc_RNA MGP_C57BL6NJ_T0089756.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456178 73458286 - MGP_C57BL6NJ_P0089756 protein_coding protein_coding MGP_C57BL6NJ_T0089757.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456178 73458512 - MGP_C57BL6NJ_P0089757 protein_coding protein_coding MGP_C57BL6NJ_T0089758.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456178 73458281 - MGP_C57BL6NJ_P0089758 protein_coding protein_coding MGP_C57BL6NJ_T0089759.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456179 73458310 - protein_coding retained_intron MGP_C57BL6NJ_T0089760.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456181 73458348 - MGP_C57BL6NJ_P0089760 protein_coding protein_coding MGP_C57BL6NJ_T0089762.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456243 73458732 - MGP_C57BL6NJ_P0089762 protein_coding protein_coding MGP_C57BL6NJ_T0089763.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456247 73457554 - MGP_C57BL6NJ_P0089763 protein_coding protein_coding MGP_C57BL6NJ_T0089764.1 MGP_C57BL6NJ_G0034205.1 mouse_genomes_project 8 73456360 73457876 - MGP_C57BL6NJ_P0089764 protein_coding protein_coding MGP_C57BL6NJ_T0090500.1 MGP_C57BL6NJ_G0034439.1 mouse_genomes_project 8 97963106 98001009 - MGP_C57BL6NJ_P0090500 Ces1d protein_coding protein_coding MGP_C57BL6NJ_T0090501.1 MGP_C57BL6NJ_G0034439.1 mouse_genomes_project 8 97963341 97967113 - Ces1d protein_coding processed_transcript MGP_C57BL6NJ_T0090502.1 MGP_C57BL6NJ_G0034439.1 mouse_genomes_project 8 97963367 97974576 - Ces1d protein_coding processed_transcript MGP_C57BL6NJ_T0090503.1 MGP_C57BL6NJ_G0034439.1 mouse_genomes_project 8 97997975 98000948 - Ces1d protein_coding processed_transcript MGP_C57BL6NJ_T0091173.1 MGP_C57BL6NJ_G0034684.1 mouse_genomes_project 8 127116885 127145220 + MGP_C57BL6NJ_P0091173 Wfdc1 protein_coding protein_coding MGP_C57BL6NJ_T0005484.1 MGP_C57BL6NJ_G0004646.1 mouse_genomes_project 8 663998 665147 - antisense antisense MGP_C57BL6NJ_T0090455.1 MGP_C57BL6NJ_G0034423.1 mouse_genomes_project 8 95464786 95696863 + MGP_C57BL6NJ_P0090455 Chd9 protein_coding protein_coding MGP_C57BL6NJ_T0090457.1 MGP_C57BL6NJ_G0034423.1 mouse_genomes_project 8 95546893 95694327 + MGP_C57BL6NJ_P0090457 Chd9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091093.1 MGP_C57BL6NJ_G0034653.1 mouse_genomes_project 8 121184705 121209710 + Vat1l protein_coding processed_transcript MGP_C57BL6NJ_T0091094.1 MGP_C57BL6NJ_G0034653.1 mouse_genomes_project 8 121184723 121368522 + MGP_C57BL6NJ_P0091094 Vat1l protein_coding protein_coding MGP_C57BL6NJ_T0091095.1 MGP_C57BL6NJ_G0034653.1 mouse_genomes_project 8 121184727 121209704 + MGP_C57BL6NJ_P0091095 Vat1l protein_coding protein_coding MGP_C57BL6NJ_T0091096.1 MGP_C57BL6NJ_G0034653.1 mouse_genomes_project 8 121362566 121368521 + Vat1l protein_coding retained_intron MGP_C57BL6NJ_T0016436.1 MGP_C57BL6NJ_G0014481.1 mouse_genomes_project 8 42655803 42656620 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088603.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528060 1554875 + MGP_C57BL6NJ_P0088603 Cers4 protein_coding protein_coding MGP_C57BL6NJ_T0088604.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528174 1551936 + MGP_C57BL6NJ_P0088604 Cers4 protein_coding protein_coding MGP_C57BL6NJ_T0088605.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528233 1567891 + MGP_C57BL6NJ_P0088605 Cers4 protein_coding protein_coding MGP_C57BL6NJ_T0088606.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528436 1559903 + MGP_C57BL6NJ_P0088606 Cers4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088607.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528483 1561333 + Cers4 protein_coding retained_intron MGP_C57BL6NJ_T0088608.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528486 1561175 + MGP_C57BL6NJ_P0088608 Cers4 protein_coding protein_coding MGP_C57BL6NJ_T0088609.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528492 1558678 + Cers4 protein_coding retained_intron MGP_C57BL6NJ_T0088610.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528516 1558769 + Cers4 protein_coding retained_intron MGP_C57BL6NJ_T0088611.1 MGP_C57BL6NJ_G0033828.1 mouse_genomes_project 8 1528555 1556744 + Cers4 protein_coding retained_intron MGP_C57BL6NJ_T0090360.1 MGP_C57BL6NJ_G0034391.1 mouse_genomes_project 8 89323552 89348617 + MGP_C57BL6NJ_P0090360 Man2b1 protein_coding protein_coding MGP_C57BL6NJ_T0091441.1 MGP_C57BL6NJ_G0034748.1 mouse_genomes_project 8 131275471 131286601 + MGP_C57BL6NJ_P0091441 Tubb3 protein_coding protein_coding MGP_C57BL6NJ_T0009377.1 MGP_C57BL6NJ_G0007533.1 mouse_genomes_project 8 128475849 128478125 + Gm26878 lincRNA lincRNA MGP_C57BL6NJ_T0011252.1 MGP_C57BL6NJ_G0009337.1 mouse_genomes_project 8 89361711 89361768 - Gm23388 miRNA miRNA MGP_C57BL6NJ_T0089935.1 MGP_C57BL6NJ_G0034261.1 mouse_genomes_project 8 75063321 75078927 + MGP_C57BL6NJ_P0089935 Zfp709 protein_coding protein_coding MGP_C57BL6NJ_T0089936.1 MGP_C57BL6NJ_G0034261.1 mouse_genomes_project 8 75063669 75064036 + Zfp709 protein_coding processed_transcript MGP_C57BL6NJ_T0103561.1 MGP_C57BL6NJ_G0041353.1 mouse_genomes_project 8 20223087 20224368 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0088798.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12700876 12803798 + MGP_C57BL6NJ_P0088798 Arhgef10 protein_coding protein_coding MGP_C57BL6NJ_T0088799.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12700930 12720226 + Arhgef10 protein_coding retained_intron MGP_C57BL6NJ_T0088800.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12700937 12757259 + MGP_C57BL6NJ_P0088800 Arhgef10 protein_coding protein_coding MGP_C57BL6NJ_T0088801.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12700951 12803798 + MGP_C57BL6NJ_P0088801 Arhgef10 protein_coding protein_coding MGP_C57BL6NJ_T0088802.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12740259 12803795 + MGP_C57BL6NJ_P0088802 Arhgef10 protein_coding protein_coding MGP_C57BL6NJ_T0088803.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12791605 12792371 + Arhgef10 protein_coding processed_transcript MGP_C57BL6NJ_T0088804.1 MGP_C57BL6NJ_G0033891.1 mouse_genomes_project 8 12798864 12803787 + Arhgef10 protein_coding processed_transcript MGP_C57BL6NJ_T0088855.1 MGP_C57BL6NJ_G0033915.1 mouse_genomes_project 8 17469669 17471507 - MGP_C57BL6NJ_P0088855 Defb8 protein_coding protein_coding MGP_C57BL6NJ_T0089990.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75897774 75948902 + MGP_C57BL6NJ_P0089990 Nwd1 protein_coding protein_coding MGP_C57BL6NJ_T0089991.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75897785 75963178 + MGP_C57BL6NJ_P0089991 Nwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089992.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75897828 75967067 + MGP_C57BL6NJ_P0089992 Nwd1 protein_coding protein_coding MGP_C57BL6NJ_T0089993.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75897834 75969922 + MGP_C57BL6NJ_P0089993 Nwd1 protein_coding protein_coding MGP_C57BL6NJ_T0089994.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75905234 75963248 + MGP_C57BL6NJ_P0089994 Nwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089995.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75908834 75963209 + MGP_C57BL6NJ_P0089995 Nwd1 protein_coding protein_coding MGP_C57BL6NJ_T0089996.1 MGP_C57BL6NJ_G0034284.1 mouse_genomes_project 8 75934298 75948299 + Nwd1 protein_coding processed_transcript MGP_C57BL6NJ_T0090818.1 MGP_C57BL6NJ_G0034556.1 mouse_genomes_project 8 112145519 112147367 + MGP_C57BL6NJ_P0090818 Thap11 protein_coding protein_coding MGP_C57BL6NJ_T0011977.1 MGP_C57BL6NJ_G0010062.1 mouse_genomes_project 8 9999596 9999913 + Gm22207 misc_RNA misc_RNA MGP_C57BL6NJ_T0011275.1 MGP_C57BL6NJ_G0009360.1 mouse_genomes_project 8 117760984 117761061 - Gm24103 miRNA miRNA MGP_C57BL6NJ_T0099229.1 MGP_C57BL6NJ_G0037293.1 mouse_genomes_project 8 72194129 72194425 + Gm25661 ribozyme ribozyme MGP_C57BL6NJ_T0091437.1 MGP_C57BL6NJ_G0034745.1 mouse_genomes_project 8 131192521 131229198 + MGP_C57BL6NJ_P0091437 Spire2 protein_coding protein_coding MGP_C57BL6NJ_T0088843.1 MGP_C57BL6NJ_G0033904.1 mouse_genomes_project 8 17133181 17136090 - MGP_C57BL6NJ_P0088843 Defb12 protein_coding protein_coding MGP_C57BL6NJ_T0088948.1 MGP_C57BL6NJ_G0033958.1 mouse_genomes_project 8 22202773 22244822 + MGP_C57BL6NJ_P0088948 Sfrp1 protein_coding protein_coding MGP_C57BL6NJ_T0090810.1 MGP_C57BL6NJ_G0034550.1 mouse_genomes_project 8 111974362 111978638 - MGP_C57BL6NJ_P0090810 Enkd1 protein_coding protein_coding MGP_C57BL6NJ_T0090020.1 MGP_C57BL6NJ_G0034294.1 mouse_genomes_project 8 78835030 79410826 + MGP_C57BL6NJ_P0090020 1700007B14Rik protein_coding protein_coding MGP_C57BL6NJ_T0090021.1 MGP_C57BL6NJ_G0034294.1 mouse_genomes_project 8 78835319 79410851 + MGP_C57BL6NJ_P0090021 1700007B14Rik protein_coding protein_coding MGP_C57BL6NJ_T0011292.1 MGP_C57BL6NJ_G0009377.1 mouse_genomes_project 8 136502556 136502634 - Mir21c miRNA miRNA MGP_C57BL6NJ_T0088744.1 MGP_C57BL6NJ_G0033870.1 mouse_genomes_project 8 11000998 11035460 + MGP_C57BL6NJ_P0088744 Tmco3 protein_coding protein_coding MGP_C57BL6NJ_T0088745.1 MGP_C57BL6NJ_G0033870.1 mouse_genomes_project 8 11001157 11033938 + MGP_C57BL6NJ_P0088745 Tmco3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090936.1 MGP_C57BL6NJ_G0034601.1 mouse_genomes_project 8 116141140 116145183 - MGP_C57BL6NJ_P0090936 Hp protein_coding protein_coding MGP_C57BL6NJ_T0091398.1 MGP_C57BL6NJ_G0034737.1 mouse_genomes_project 8 131020979 131039205 + MGP_C57BL6NJ_P0091398 Dpep1 protein_coding protein_coding MGP_C57BL6NJ_T0098898.1 MGP_C57BL6NJ_G0036962.1 mouse_genomes_project 8 24611655 24612621 + pseudogene pseudogene MGP_C57BL6NJ_T0090410.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92040019 92292231 - MGP_C57BL6NJ_P0090410 Zfp423 protein_coding protein_coding MGP_C57BL6NJ_T0090411.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92040732 92360462 - MGP_C57BL6NJ_P0090411 Zfp423 protein_coding protein_coding MGP_C57BL6NJ_T0090412.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92167133 92355089 - MGP_C57BL6NJ_P0090412 Zfp423 protein_coding protein_coding MGP_C57BL6NJ_T0090413.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92167288 92187922 - MGP_C57BL6NJ_P0090413 Zfp423 protein_coding protein_coding MGP_C57BL6NJ_T0090414.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92167457 92343881 - Zfp423 protein_coding processed_transcript MGP_C57BL6NJ_T0090415.1 MGP_C57BL6NJ_G0034410.1 mouse_genomes_project 8 92167474 92348573 - Zfp423 protein_coding processed_transcript MGP_C57BL6NJ_T0009260.1 MGP_C57BL6NJ_G0007446.1 mouse_genomes_project 8 9309159 9320735 + 1700128E19Rik lincRNA lincRNA MGP_C57BL6NJ_T0088906.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21387308 21435332 - MGP_C57BL6NJ_P0088906 Ikbkb protein_coding protein_coding MGP_C57BL6NJ_T0088907.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21387309 21435294 - MGP_C57BL6NJ_P0088907 Ikbkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088908.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21387309 21435288 - MGP_C57BL6NJ_P0088908 Ikbkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088909.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21387864 21435343 - MGP_C57BL6NJ_P0088909 Ikbkb protein_coding protein_coding MGP_C57BL6NJ_T0088910.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21388204 21389579 - MGP_C57BL6NJ_P0088910 Ikbkb protein_coding protein_coding MGP_C57BL6NJ_T0088911.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21388453 21435332 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088912.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21396107 21397123 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088913.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21404080 21435294 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088914.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21409308 21435293 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088915.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21410853 21422832 - MGP_C57BL6NJ_P0088915 Ikbkb protein_coding protein_coding MGP_C57BL6NJ_T0088916.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21417897 21435313 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088917.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21420606 21435328 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088918.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21430761 21435317 - Ikbkb protein_coding retained_intron MGP_C57BL6NJ_T0088919.1 MGP_C57BL6NJ_G0033949.1 mouse_genomes_project 8 21431205 21435279 - Ikbkb protein_coding processed_transcript MGP_C57BL6NJ_T0011221.1 MGP_C57BL6NJ_G0009306.1 mouse_genomes_project 8 35911601 35911664 - Gm22030 miRNA miRNA MGP_C57BL6NJ_T0100666.1 MGP_C57BL6NJ_G0038712.1 mouse_genomes_project 8 102397246 102397348 + Gm25160 snRNA snRNA MGP_C57BL6NJ_T0089614.1 MGP_C57BL6NJ_G0034167.1 mouse_genomes_project 8 72519868 72532301 + Zfp964 protein_coding retained_intron MGP_C57BL6NJ_T0089615.1 MGP_C57BL6NJ_G0034167.1 mouse_genomes_project 8 72519881 72536394 + MGP_C57BL6NJ_P0089615 Zfp964 protein_coding protein_coding MGP_C57BL6NJ_T0089616.1 MGP_C57BL6NJ_G0034167.1 mouse_genomes_project 8 72528674 72533582 + MGP_C57BL6NJ_P0089616 Zfp964 protein_coding protein_coding MGP_C57BL6NJ_T0089622.1 MGP_C57BL6NJ_G0034171.1 mouse_genomes_project 8 72636828 72648284 - MGP_C57BL6NJ_P0089622 Zfp866 protein_coding protein_coding MGP_C57BL6NJ_T0009318.1 MGP_C57BL6NJ_G0007494.1 mouse_genomes_project 8 91255752 91256631 + 2010110E17Rik lincRNA lincRNA MGP_C57BL6NJ_T0101967.1 MGP_C57BL6NJ_G0040013.1 mouse_genomes_project 8 120459514 120459645 - Gm25766 snoRNA snoRNA MGP_C57BL6NJ_T0011255.1 MGP_C57BL6NJ_G0009340.1 mouse_genomes_project 8 92559934 92560003 + Mir7071 miRNA miRNA MGP_C57BL6NJ_T0090458.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95713550 95769692 + MGP_C57BL6NJ_P0090458 Rbl2 protein_coding protein_coding MGP_C57BL6NJ_T0090459.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95713587 95723453 + Rbl2 protein_coding retained_intron MGP_C57BL6NJ_T0090460.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95752540 95760952 + Rbl2 protein_coding retained_intron MGP_C57BL6NJ_T0090461.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95752577 95759897 + Rbl2 protein_coding processed_transcript MGP_C57BL6NJ_T0090463.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95758090 95761674 + Rbl2 protein_coding retained_intron MGP_C57BL6NJ_T0090464.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95759501 95761614 + Rbl2 protein_coding retained_intron MGP_C57BL6NJ_T0090465.1 MGP_C57BL6NJ_G0034425.1 mouse_genomes_project 8 95760976 95761935 + Rbl2 protein_coding retained_intron MGP_C57BL6NJ_T0088495.1 MGP_C57BL6NJ_G0033799.1 mouse_genomes_project 8 469640 499252 + MGP_C57BL6NJ_P0088495 Pnpla6 protein_coding protein_coding MGP_C57BL6NJ_T0101941.1 MGP_C57BL6NJ_G0039987.1 mouse_genomes_project 8 69510455 69510584 - Gm25275 snoRNA snoRNA MGP_C57BL6NJ_T0091281.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129501963 129529621 - MGP_C57BL6NJ_P0091281 Klhdc4 protein_coding protein_coding MGP_C57BL6NJ_T0091282.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129501983 129529592 - Klhdc4 protein_coding retained_intron MGP_C57BL6NJ_T0091283.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129501994 129503079 - Klhdc4 protein_coding retained_intron MGP_C57BL6NJ_T0091284.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129502197 129529532 - MGP_C57BL6NJ_P0091284 Klhdc4 protein_coding protein_coding MGP_C57BL6NJ_T0091285.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129502197 129529532 - MGP_C57BL6NJ_P0091285 Klhdc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091286.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129502197 129529532 - MGP_C57BL6NJ_P0091286 Klhdc4 protein_coding protein_coding MGP_C57BL6NJ_T0091287.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129503833 129510976 - Klhdc4 protein_coding processed_transcript MGP_C57BL6NJ_T0091288.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129505135 129507250 - Klhdc4 protein_coding retained_intron MGP_C57BL6NJ_T0091289.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129526619 129529561 - Klhdc4 protein_coding retained_intron MGP_C57BL6NJ_T0091290.1 MGP_C57BL6NJ_G0034710.1 mouse_genomes_project 8 129526913 129529556 - MGP_C57BL6NJ_P0091290 Klhdc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101971.1 MGP_C57BL6NJ_G0040017.1 mouse_genomes_project 8 130935574 130935660 + Snord68 snoRNA snoRNA MGP_C57BL6NJ_T0016397.1 MGP_C57BL6NJ_G0014442.1 mouse_genomes_project 8 858151 858607 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011204.1 MGP_C57BL6NJ_G0009289.1 mouse_genomes_project 8 7204025 7204178 - miRNA miRNA MGP_C57BL6NJ_T0011989.1 MGP_C57BL6NJ_G0010074.1 mouse_genomes_project 8 99632174 99632444 - Gm22846 misc_RNA misc_RNA MGP_C57BL6NJ_T0088747.1 MGP_C57BL6NJ_G0033872.1 mouse_genomes_project 8 11108554 11118942 - MGP_C57BL6NJ_P0088747 Atp4b protein_coding protein_coding MGP_C57BL6NJ_T0089084.1 MGP_C57BL6NJ_G0034003.1 mouse_genomes_project 8 27984952 28590619 - MGP_C57BL6NJ_P0089084 Unc5d protein_coding protein_coding MGP_C57BL6NJ_T0089085.1 MGP_C57BL6NJ_G0034003.1 mouse_genomes_project 8 27991003 28201545 - MGP_C57BL6NJ_P0089085 Unc5d protein_coding unknown_likely_coding MGP_C57BL6NJ_T0005535.1 MGP_C57BL6NJ_G0004686.1 mouse_genomes_project 8 89611848 89612272 + antisense antisense MGP_C57BL6NJ_T0101927.1 MGP_C57BL6NJ_G0039973.1 mouse_genomes_project 8 42968304 42968372 - Gm23531 snoRNA snoRNA MGP_C57BL6NJ_T0011263.1 MGP_C57BL6NJ_G0009348.1 mouse_genomes_project 8 108526983 108527078 - Gm26301 miRNA miRNA MGP_C57BL6NJ_T0088862.1 MGP_C57BL6NJ_G0033920.1 mouse_genomes_project 8 19330655 19331711 - MGP_C57BL6NJ_P0088862 AY761185 protein_coding protein_coding MGP_C57BL6NJ_T0091584.1 MGP_C57BL6NJ_G0034795.1 mouse_genomes_project 8 137239630 137332300 - MGP_C57BL6NJ_P0091584 Ccdc7a protein_coding protein_coding MGP_C57BL6NJ_T0091585.1 MGP_C57BL6NJ_G0034795.1 mouse_genomes_project 8 137239630 137332329 - MGP_C57BL6NJ_P0091585 Ccdc7a protein_coding protein_coding MGP_C57BL6NJ_T0011211.1 MGP_C57BL6NJ_G0009296.1 mouse_genomes_project 8 12124213 12124321 + Gm44347 miRNA miRNA MGP_C57BL6NJ_T0090987.1 MGP_C57BL6NJ_G0034621.1 mouse_genomes_project 8 117495113 117531413 - MGP_C57BL6NJ_P0090987 Sf3b3 protein_coding protein_coding MGP_C57BL6NJ_T0090406.1 MGP_C57BL6NJ_G0034407.1 mouse_genomes_project 8 91209044 91255323 - MGP_C57BL6NJ_P0090406 N4bp1 protein_coding protein_coding MGP_C57BL6NJ_T0099525.1 MGP_C57BL6NJ_G0037577.1 mouse_genomes_project 8 128062681 128063753 + Gm26971 sense_intronic sense_intronic MGP_C57BL6NJ_T0088853.1 MGP_C57BL6NJ_G0033913.1 mouse_genomes_project 8 17267671 17270364 + MGP_C57BL6NJ_P0088853 Defb5 protein_coding protein_coding MGP_C57BL6NJ_T0088871.1 MGP_C57BL6NJ_G0033929.1 mouse_genomes_project 8 20571549 20573556 - MGP_C57BL6NJ_P0088871 Defb11 protein_coding protein_coding MGP_C57BL6NJ_T0088774.1 MGP_C57BL6NJ_G0033884.1 mouse_genomes_project 8 11653187 11689559 + MGP_C57BL6NJ_P0088774 Fbxo25 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0088775.1 MGP_C57BL6NJ_G0033884.1 mouse_genomes_project 8 11653199 11690428 + MGP_C57BL6NJ_P0088775 Fbxo25 protein_coding protein_coding MGP_C57BL6NJ_T0089963.1 MGP_C57BL6NJ_G0034270.1 mouse_genomes_project 8 75391735 75415434 + MGP_C57BL6NJ_P0089963 Rab8a protein_coding protein_coding MGP_C57BL6NJ_T0089964.1 MGP_C57BL6NJ_G0034270.1 mouse_genomes_project 8 75391848 75407308 + Rab8a protein_coding processed_transcript MGP_C57BL6NJ_T0089965.1 MGP_C57BL6NJ_G0034270.1 mouse_genomes_project 8 75391894 75407502 + Rab8a protein_coding retained_intron MGP_C57BL6NJ_T0090055.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82740248 82789278 + MGP_C57BL6NJ_P0090055 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090056.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82740248 82922098 + MGP_C57BL6NJ_P0090056 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090057.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82740422 82919211 + MGP_C57BL6NJ_P0090057 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090058.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82841610 82922121 + MGP_C57BL6NJ_P0090058 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090059.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82843766 82921547 + MGP_C57BL6NJ_P0090059 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090060.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82901638 82919209 + MGP_C57BL6NJ_P0090060 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0090061.1 MGP_C57BL6NJ_G0034305.1 mouse_genomes_project 8 82904803 82918116 + MGP_C57BL6NJ_P0090061 Zfp827 protein_coding protein_coding MGP_C57BL6NJ_T0100642.1 MGP_C57BL6NJ_G0038688.1 mouse_genomes_project 8 46635217 46635343 - Gm25309 snRNA snRNA MGP_C57BL6NJ_T0016439.1 MGP_C57BL6NJ_G0014484.1 mouse_genomes_project 8 63331722 63332095 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016478.1 MGP_C57BL6NJ_G0014523.1 mouse_genomes_project 8 128308038 128308719 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099165.1 MGP_C57BL6NJ_G0037229.1 mouse_genomes_project 8 48903230 48903343 + n-R5s97 rRNA rRNA MGP_C57BL6NJ_T0089559.1 MGP_C57BL6NJ_G0034153.1 mouse_genomes_project 8 70163890 70188657 + MGP_C57BL6NJ_P0089559 Nat3 protein_coding protein_coding MGP_C57BL6NJ_T0101969.1 MGP_C57BL6NJ_G0040015.1 mouse_genomes_project 8 126094182 126094270 + Gm22999 snoRNA snoRNA MGP_C57BL6NJ_T0089180.1 MGP_C57BL6NJ_G0034040.1 mouse_genomes_project 8 39223591 39366511 + MGP_C57BL6NJ_P0089180 Tusc3 protein_coding protein_coding MGP_C57BL6NJ_T0091366.1 MGP_C57BL6NJ_G0034731.1 mouse_genomes_project 8 130653765 130672919 + MGP_C57BL6NJ_P0091366 Cdh15 protein_coding protein_coding MGP_C57BL6NJ_T0011282.1 MGP_C57BL6NJ_G0009367.1 mouse_genomes_project 8 127972879 127972970 - Gm22715 miRNA miRNA MGP_C57BL6NJ_T0089852.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74506446 74514230 - Nr2f6 protein_coding processed_transcript MGP_C57BL6NJ_T0089853.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74506450 74514284 - MGP_C57BL6NJ_P0089853 Nr2f6 protein_coding protein_coding MGP_C57BL6NJ_T0089854.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74506951 74508114 - Nr2f6 protein_coding processed_transcript MGP_C57BL6NJ_T0089855.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74506976 74508114 - Nr2f6 protein_coding processed_transcript MGP_C57BL6NJ_T0089856.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74507441 74508114 - Nr2f6 protein_coding processed_transcript MGP_C57BL6NJ_T0089857.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74508075 74513233 - Nr2f6 protein_coding processed_transcript MGP_C57BL6NJ_T0089858.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74508075 74513414 - MGP_C57BL6NJ_P0089858 Nr2f6 protein_coding protein_coding MGP_C57BL6NJ_T0089859.1 MGP_C57BL6NJ_G0034238.1 mouse_genomes_project 8 74508142 74513501 - MGP_C57BL6NJ_P0089859 Nr2f6 protein_coding protein_coding MGP_C57BL6NJ_T0090547.1 MGP_C57BL6NJ_G0034454.1 mouse_genomes_project 8 99117300 99224935 + MGP_C57BL6NJ_P0090547 Nup93 protein_coding protein_coding MGP_C57BL6NJ_T0090548.1 MGP_C57BL6NJ_G0034454.1 mouse_genomes_project 8 99134679 99225144 + MGP_C57BL6NJ_P0090548 Nup93 protein_coding protein_coding MGP_C57BL6NJ_T0090165.1 MGP_C57BL6NJ_G0034342.1 mouse_genomes_project 8 88114307 88117576 + MGP_C57BL6NJ_P0090165 1700067K01Rik protein_coding protein_coding MGP_C57BL6NJ_T0090166.1 MGP_C57BL6NJ_G0034342.1 mouse_genomes_project 8 88114509 88117476 + MGP_C57BL6NJ_P0090166 1700067K01Rik protein_coding protein_coding MGP_C57BL6NJ_T0090167.1 MGP_C57BL6NJ_G0034342.1 mouse_genomes_project 8 88114509 88117470 + MGP_C57BL6NJ_P0090167 1700067K01Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090168.1 MGP_C57BL6NJ_G0034342.1 mouse_genomes_project 8 88115134 88116095 + 1700067K01Rik protein_coding retained_intron MGP_C57BL6NJ_T0101932.1 MGP_C57BL6NJ_G0039978.1 mouse_genomes_project 8 50059328 50059460 - Gm25830 snoRNA snoRNA MGP_C57BL6NJ_T0091327.1 MGP_C57BL6NJ_G0034717.1 mouse_genomes_project 8 130143838 130145458 + MGP_C57BL6NJ_P0091327 Il17c protein_coding protein_coding MGP_C57BL6NJ_T0089997.1 MGP_C57BL6NJ_G0034285.1 mouse_genomes_project 8 75978453 76000203 + MGP_C57BL6NJ_P0089997 Sin3b protein_coding protein_coding MGP_C57BL6NJ_T0089998.1 MGP_C57BL6NJ_G0034285.1 mouse_genomes_project 8 75978453 76019671 + MGP_C57BL6NJ_P0089998 Sin3b protein_coding protein_coding MGP_C57BL6NJ_T0016460.1 MGP_C57BL6NJ_G0014505.1 mouse_genomes_project 8 85785062 85786675 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005524.1 MGP_C57BL6NJ_G0004677.1 mouse_genomes_project 8 68928967 68931880 - Gm15354 antisense antisense MGP_C57BL6NJ_T0090815.1 MGP_C57BL6NJ_G0034553.1 mouse_genomes_project 8 112045862 112112592 - MGP_C57BL6NJ_P0090815 Ranbp10 protein_coding protein_coding MGP_C57BL6NJ_T0089633.1 MGP_C57BL6NJ_G0034174.1 mouse_genomes_project 8 72701523 72711699 + MGP_C57BL6NJ_P0089633 Lpar2 protein_coding protein_coding MGP_C57BL6NJ_T0089634.1 MGP_C57BL6NJ_G0034174.1 mouse_genomes_project 8 72701659 72711700 + MGP_C57BL6NJ_P0089634 Lpar2 protein_coding protein_coding MGP_C57BL6NJ_T0100635.1 MGP_C57BL6NJ_G0038681.1 mouse_genomes_project 8 21555034 21555152 - Gm24735 snRNA snRNA MGP_C57BL6NJ_T0088872.1 MGP_C57BL6NJ_G0033930.1 mouse_genomes_project 8 20597061 20610820 - MGP_C57BL6NJ_P0088872 Defb15 protein_coding protein_coding MGP_C57BL6NJ_T0009309.1 MGP_C57BL6NJ_G0007486.1 mouse_genomes_project 8 83028725 83041288 + Gm4890 lincRNA lincRNA MGP_C57BL6NJ_T0090014.1 MGP_C57BL6NJ_G0034291.1 mouse_genomes_project 8 78476856 78486030 + MGP_C57BL6NJ_P0090014 Hmox1 protein_coding protein_coding MGP_C57BL6NJ_T0090015.1 MGP_C57BL6NJ_G0034291.1 mouse_genomes_project 8 78476906 78481885 + Hmox1 protein_coding retained_intron MGP_C57BL6NJ_T0090016.1 MGP_C57BL6NJ_G0034291.1 mouse_genomes_project 8 78477115 78482638 + MGP_C57BL6NJ_P0090016 Hmox1 protein_coding protein_coding MGP_C57BL6NJ_T0089901.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74748685 74760804 + MGP_C57BL6NJ_P0089901 Fam129c protein_coding protein_coding MGP_C57BL6NJ_T0089902.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74748819 74760792 + Fam129c protein_coding retained_intron MGP_C57BL6NJ_T0089903.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74750213 74752126 + Fam129c protein_coding processed_transcript MGP_C57BL6NJ_T0089904.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74750947 74755102 + Fam129c protein_coding retained_intron MGP_C57BL6NJ_T0089905.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74755134 74755811 + Fam129c protein_coding retained_intron MGP_C57BL6NJ_T0089906.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74755218 74760792 + Fam129c protein_coding retained_intron MGP_C57BL6NJ_T0089907.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74757611 74760439 + MGP_C57BL6NJ_P0089907 Fam129c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089908.1 MGP_C57BL6NJ_G0034254.1 mouse_genomes_project 8 74757828 74760801 + MGP_C57BL6NJ_P0089908 Fam129c protein_coding protein_coding MGP_C57BL6NJ_T0009365.1 MGP_C57BL6NJ_G0007523.1 mouse_genomes_project 8 112618126 112635418 + Gm10629 lincRNA lincRNA MGP_C57BL6NJ_T0090763.1 MGP_C57BL6NJ_G0034534.1 mouse_genomes_project 8 111545284 111547988 + MGP_C57BL6NJ_P0090763 Tmem208 protein_coding protein_coding MGP_C57BL6NJ_T0090764.1 MGP_C57BL6NJ_G0034534.1 mouse_genomes_project 8 111545292 111547986 + MGP_C57BL6NJ_P0090764 Tmem208 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090765.1 MGP_C57BL6NJ_G0034534.1 mouse_genomes_project 8 111545318 111547983 + MGP_C57BL6NJ_P0090765 Tmem208 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090766.1 MGP_C57BL6NJ_G0034534.1 mouse_genomes_project 8 111545325 111554138 + MGP_C57BL6NJ_P0090766 Tmem208 protein_coding protein_coding MGP_C57BL6NJ_T0090767.1 MGP_C57BL6NJ_G0034534.1 mouse_genomes_project 8 111545385 111553720 + MGP_C57BL6NJ_P0090767 Tmem208 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088552.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187775 1208775 + protein_coding retained_intron MGP_C57BL6NJ_T0088553.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187775 1231332 + MGP_C57BL6NJ_P0088553 protein_coding protein_coding MGP_C57BL6NJ_T0088554.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187775 1215488 + MGP_C57BL6NJ_P0088554 protein_coding protein_coding MGP_C57BL6NJ_T0088555.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187782 1231507 + MGP_C57BL6NJ_P0088555 protein_coding protein_coding MGP_C57BL6NJ_T0088556.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187795 1231327 + MGP_C57BL6NJ_P0088556 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088557.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187809 1225009 + protein_coding retained_intron MGP_C57BL6NJ_T0088558.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1187947 1231327 + MGP_C57BL6NJ_P0088558 protein_coding protein_coding MGP_C57BL6NJ_T0088559.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1209082 1209924 + protein_coding retained_intron MGP_C57BL6NJ_T0088560.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1213078 1226360 + protein_coding processed_transcript MGP_C57BL6NJ_T0088561.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1222586 1229006 + protein_coding retained_intron MGP_C57BL6NJ_T0088562.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1226655 1231323 + protein_coding retained_intron MGP_C57BL6NJ_T0088563.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1226899 1229621 + protein_coding retained_intron MGP_C57BL6NJ_T0088564.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1229009 1229884 + protein_coding retained_intron MGP_C57BL6NJ_T0088565.1 MGP_C57BL6NJ_G0033818.1 mouse_genomes_project 8 1229529 1234538 + MGP_C57BL6NJ_P0088565 protein_coding protein_coding MGP_C57BL6NJ_T0011223.1 MGP_C57BL6NJ_G0009308.1 mouse_genomes_project 8 40605055 40605110 - Mir7666 miRNA miRNA MGP_C57BL6NJ_T0005531.1 MGP_C57BL6NJ_G0004683.1 mouse_genomes_project 8 81096935 81098448 + 0610038B21Rik antisense antisense MGP_C57BL6NJ_T0005532.1 MGP_C57BL6NJ_G0004683.1 mouse_genomes_project 8 81097983 81103918 + 0610038B21Rik antisense antisense MGP_C57BL6NJ_T0089651.1 MGP_C57BL6NJ_G0034180.1 mouse_genomes_project 8 72804134 72852220 - MGP_C57BL6NJ_P0089651 Gatad2a protein_coding protein_coding MGP_C57BL6NJ_T0089652.1 MGP_C57BL6NJ_G0034180.1 mouse_genomes_project 8 72804139 72898155 - MGP_C57BL6NJ_P0089652 Gatad2a protein_coding protein_coding MGP_C57BL6NJ_T0089336.1 MGP_C57BL6NJ_G0034082.1 mouse_genomes_project 8 47098071 47100693 - MGP_C57BL6NJ_P0089336 Helt protein_coding protein_coding MGP_C57BL6NJ_T0090407.1 MGP_C57BL6NJ_G0034408.1 mouse_genomes_project 8 91837556 91841295 - MGP_C57BL6NJ_P0090407 Cbln1 protein_coding protein_coding MGP_C57BL6NJ_T0090408.1 MGP_C57BL6NJ_G0034408.1 mouse_genomes_project 8 91837940 91841089 - MGP_C57BL6NJ_P0090408 Cbln1 protein_coding protein_coding MGP_C57BL6NJ_T0016425.1 MGP_C57BL6NJ_G0014470.1 mouse_genomes_project 8 32099138 32100094 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005527.1 MGP_C57BL6NJ_G0004680.1 mouse_genomes_project 8 71064205 71068065 + 1700125H03Rik antisense antisense MGP_C57BL6NJ_T0005528.1 MGP_C57BL6NJ_G0004680.1 mouse_genomes_project 8 71064237 71071482 + 1700125H03Rik antisense antisense MGP_C57BL6NJ_T0009269.1 MGP_C57BL6NJ_G0007452.1 mouse_genomes_project 8 21192338 21195382 + Gm17491 lincRNA lincRNA MGP_C57BL6NJ_T0002479.1 MGP_C57BL6NJ_G0002367.1 mouse_genomes_project 8 113529777 113530560 + TEC TEC MGP_C57BL6NJ_T0091161.1 MGP_C57BL6NJ_G0034678.1 mouse_genomes_project 8 126952826 127006099 - MGP_C57BL6NJ_P0091161 Mbtps1 protein_coding protein_coding MGP_C57BL6NJ_T0091162.1 MGP_C57BL6NJ_G0034678.1 mouse_genomes_project 8 126952826 127006099 - MGP_C57BL6NJ_P0091162 Mbtps1 protein_coding protein_coding MGP_C57BL6NJ_T0089113.1 MGP_C57BL6NJ_G0034018.1 mouse_genomes_project 8 33346325 33369644 + Gsr protein_coding processed_transcript MGP_C57BL6NJ_T0089114.1 MGP_C57BL6NJ_G0034018.1 mouse_genomes_project 8 33347040 33395621 + MGP_C57BL6NJ_P0089114 Gsr protein_coding protein_coding MGP_C57BL6NJ_T0089115.1 MGP_C57BL6NJ_G0034018.1 mouse_genomes_project 8 33364446 33381097 + Gsr protein_coding processed_transcript MGP_C57BL6NJ_T0011208.1 MGP_C57BL6NJ_G0009293.1 mouse_genomes_project 8 10820437 10820498 + Mir7065 miRNA miRNA MGP_C57BL6NJ_T0089352.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47413870 47457750 - MGP_C57BL6NJ_P0089352 Primpol protein_coding protein_coding MGP_C57BL6NJ_T0089353.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47414453 47457750 - Primpol protein_coding retained_intron MGP_C57BL6NJ_T0089354.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47416884 47457760 - MGP_C57BL6NJ_P0089354 Primpol protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089355.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47425350 47432306 - Primpol protein_coding processed_transcript MGP_C57BL6NJ_T0089356.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47445707 47453565 - MGP_C57BL6NJ_P0089356 Primpol protein_coding protein_coding MGP_C57BL6NJ_T0089357.1 MGP_C57BL6NJ_G0034085.1 mouse_genomes_project 8 47451327 47457762 - Primpol protein_coding retained_intron MGP_C57BL6NJ_T0089253.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45619342 45744989 + MGP_C57BL6NJ_P0089253 Fat1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089254.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45619571 45745837 + MGP_C57BL6NJ_P0089254 Fat1 protein_coding protein_coding MGP_C57BL6NJ_T0089255.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45635370 45745837 + MGP_C57BL6NJ_P0089255 Fat1 protein_coding protein_coding MGP_C57BL6NJ_T0089256.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45726936 45745825 + MGP_C57BL6NJ_P0089256 Fat1 protein_coding protein_coding MGP_C57BL6NJ_T0089257.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45738111 45744411 + MGP_C57BL6NJ_P0089257 Fat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089258.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45738111 45744411 + MGP_C57BL6NJ_P0089258 Fat1 protein_coding protein_coding MGP_C57BL6NJ_T0089259.1 MGP_C57BL6NJ_G0034065.1 mouse_genomes_project 8 45738713 45744080 + Fat1 protein_coding retained_intron MGP_C57BL6NJ_T0090040.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81828869 81836548 + MGP_C57BL6NJ_P0090040 Ttc29 protein_coding protein_coding MGP_C57BL6NJ_T0090041.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81828874 81836406 + MGP_C57BL6NJ_P0090041 Ttc29 protein_coding protein_coding MGP_C57BL6NJ_T0090042.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81828887 81833591 + Ttc29 protein_coding processed_transcript MGP_C57BL6NJ_T0090043.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81828914 82021744 + MGP_C57BL6NJ_P0090043 Ttc29 protein_coding protein_coding MGP_C57BL6NJ_T0090044.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81828922 81833535 + Ttc29 protein_coding processed_transcript MGP_C57BL6NJ_T0090045.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81834366 82021101 + MGP_C57BL6NJ_P0090045 Ttc29 protein_coding protein_coding MGP_C57BL6NJ_T0090046.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 81869933 81896440 + Ttc29 protein_coding retained_intron MGP_C57BL6NJ_T0090047.1 MGP_C57BL6NJ_G0034300.1 mouse_genomes_project 8 82017524 82021192 + Ttc29 protein_coding processed_transcript MGP_C57BL6NJ_T0011202.1 MGP_C57BL6NJ_G0009287.1 mouse_genomes_project 8 2774602 2774671 + Gm22565 miRNA miRNA MGP_C57BL6NJ_T0016480.1 MGP_C57BL6NJ_G0014525.1 mouse_genomes_project 8 131771493 131771860 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089427.1 MGP_C57BL6NJ_G0034111.1 mouse_genomes_project 8 57652595 57690487 - MGP_C57BL6NJ_P0089427 Adam29 protein_coding protein_coding MGP_C57BL6NJ_T0005545.1 MGP_C57BL6NJ_G0004694.1 mouse_genomes_project 8 113435665 113437179 - Gm16208 antisense antisense MGP_C57BL6NJ_T0090719.1 MGP_C57BL6NJ_G0034515.1 mouse_genomes_project 8 111081726 111090139 + MGP_C57BL6NJ_P0090719 Ces2e protein_coding protein_coding MGP_C57BL6NJ_T0090720.1 MGP_C57BL6NJ_G0034515.1 mouse_genomes_project 8 111081726 111090139 + MGP_C57BL6NJ_P0090720 Ces2e protein_coding protein_coding MGP_C57BL6NJ_T0101911.1 MGP_C57BL6NJ_G0039957.1 mouse_genomes_project 8 11623263 11623393 + Gm24698 snoRNA snoRNA MGP_C57BL6NJ_T0090878.1 MGP_C57BL6NJ_G0034580.1 mouse_genomes_project 8 113050775 113240710 + MGP_C57BL6NJ_P0090878 Tango6 protein_coding protein_coding MGP_C57BL6NJ_T0090000.1 MGP_C57BL6NJ_G0034287.1 mouse_genomes_project 8 76086324 76626826 - MGP_C57BL6NJ_P0090000 Large protein_coding protein_coding MGP_C57BL6NJ_T0090001.1 MGP_C57BL6NJ_G0034287.1 mouse_genomes_project 8 76086324 76625746 - MGP_C57BL6NJ_P0090001 Large protein_coding protein_coding MGP_C57BL6NJ_T0090002.1 MGP_C57BL6NJ_G0034287.1 mouse_genomes_project 8 76308352 76364265 - Large protein_coding retained_intron MGP_C57BL6NJ_T0089773.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73477623 73486184 + MGP_C57BL6NJ_P0089773 Fkbp8 protein_coding protein_coding MGP_C57BL6NJ_T0089774.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73477646 73486182 + MGP_C57BL6NJ_P0089774 Fkbp8 protein_coding protein_coding MGP_C57BL6NJ_T0089775.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73477661 73483430 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089776.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73477745 73486183 + MGP_C57BL6NJ_P0089776 Fkbp8 protein_coding protein_coding MGP_C57BL6NJ_T0089777.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73477908 73481575 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089778.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73478715 73480560 + MGP_C57BL6NJ_P0089778 Fkbp8 protein_coding protein_coding MGP_C57BL6NJ_T0089779.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73482100 73485027 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089780.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73482710 73485812 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089781.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73483097 73485827 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089782.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73483160 73485723 + Fkbp8 protein_coding retained_intron MGP_C57BL6NJ_T0089783.1 MGP_C57BL6NJ_G0034207.1 mouse_genomes_project 8 73484972 73485913 + MGP_C57BL6NJ_P0089783 Fkbp8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088624.1 MGP_C57BL6NJ_G0033839.1 mouse_genomes_project 8 7412301 7419952 - MGP_C57BL6NJ_P0088624 Lig4 protein_coding protein_coding MGP_C57BL6NJ_T0088625.1 MGP_C57BL6NJ_G0033839.1 mouse_genomes_project 8 7413158 7421315 - MGP_C57BL6NJ_P0088625 Lig4 protein_coding protein_coding MGP_C57BL6NJ_T0016403.1 MGP_C57BL6NJ_G0014448.1 mouse_genomes_project 8 10651522 10651726 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009374.1 MGP_C57BL6NJ_G0007530.1 mouse_genomes_project 8 128147286 128153929 + Gm10614 lincRNA lincRNA MGP_C57BL6NJ_T0011283.1 MGP_C57BL6NJ_G0009368.1 mouse_genomes_project 8 128093324 128093383 + Mir7687 miRNA miRNA MGP_C57BL6NJ_T0005552.1 MGP_C57BL6NJ_G0004700.1 mouse_genomes_project 8 121332428 121345929 - 4933408N05Rik antisense antisense MGP_C57BL6NJ_T0089826.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74358614 74399188 - MGP_C57BL6NJ_P0089826 Haus8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089827.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74361362 74399661 - MGP_C57BL6NJ_P0089827 Haus8 protein_coding protein_coding MGP_C57BL6NJ_T0089828.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74361362 74399104 - MGP_C57BL6NJ_P0089828 Haus8 protein_coding protein_coding MGP_C57BL6NJ_T0089829.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74365735 74399188 - Haus8 protein_coding processed_transcript MGP_C57BL6NJ_T0089830.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74366330 74366946 - Haus8 protein_coding retained_intron MGP_C57BL6NJ_T0089831.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74366357 74399206 - Haus8 protein_coding processed_transcript MGP_C57BL6NJ_T0089832.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74369465 74399170 - Haus8 protein_coding retained_intron MGP_C57BL6NJ_T0089833.1 MGP_C57BL6NJ_G0034234.1 mouse_genomes_project 8 74373724 74399086 - Haus8 protein_coding processed_transcript MGP_C57BL6NJ_T0090365.1 MGP_C57BL6NJ_G0034396.1 mouse_genomes_project 8 89569603 89577753 + MGP_C57BL6NJ_P0090365 Orc6 protein_coding protein_coding MGP_C57BL6NJ_T0011972.1 MGP_C57BL6NJ_G0010057.1 mouse_genomes_project 8 1136523 1136776 - Gm23888 misc_RNA misc_RNA MGP_C57BL6NJ_T0089970.1 MGP_C57BL6NJ_G0034274.1 mouse_genomes_project 8 75463605 75487619 + MGP_C57BL6NJ_P0089970 Ap1m1 protein_coding protein_coding MGP_C57BL6NJ_T0089971.1 MGP_C57BL6NJ_G0034274.1 mouse_genomes_project 8 75463697 75480314 + MGP_C57BL6NJ_P0089971 Ap1m1 protein_coding protein_coding MGP_C57BL6NJ_T0089972.1 MGP_C57BL6NJ_G0034274.1 mouse_genomes_project 8 75463910 75482250 + MGP_C57BL6NJ_P0089972 Ap1m1 protein_coding protein_coding MGP_C57BL6NJ_T0089973.1 MGP_C57BL6NJ_G0034274.1 mouse_genomes_project 8 75483287 75486841 + Ap1m1 protein_coding retained_intron MGP_C57BL6NJ_T0089974.1 MGP_C57BL6NJ_G0034274.1 mouse_genomes_project 8 75483367 75487147 + Ap1m1 protein_coding retained_intron MGP_C57BL6NJ_T0009305.1 MGP_C57BL6NJ_G0007483.1 mouse_genomes_project 8 75762788 75775354 + Gm17435 lincRNA lincRNA MGP_C57BL6NJ_T0089869.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74611123 + Dda1 protein_coding processed_transcript MGP_C57BL6NJ_T0089870.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74614975 + Dda1 protein_coding processed_transcript MGP_C57BL6NJ_T0089871.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74611252 + Dda1 protein_coding retained_intron MGP_C57BL6NJ_T0089872.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74614975 + Dda1 protein_coding processed_transcript MGP_C57BL6NJ_T0089873.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74614975 + MGP_C57BL6NJ_P0089873 Dda1 protein_coding protein_coding MGP_C57BL6NJ_T0089874.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608075 74614975 + MGP_C57BL6NJ_P0089874 Dda1 protein_coding protein_coding MGP_C57BL6NJ_T0089875.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608081 74614975 + MGP_C57BL6NJ_P0089875 Dda1 protein_coding protein_coding MGP_C57BL6NJ_T0089876.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608087 74611659 + Dda1 protein_coding retained_intron MGP_C57BL6NJ_T0089877.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608087 74613851 + Dda1 protein_coding retained_intron MGP_C57BL6NJ_T0089878.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74608161 74611492 + Dda1 protein_coding retained_intron MGP_C57BL6NJ_T0089879.1 MGP_C57BL6NJ_G0034244.1 mouse_genomes_project 8 74609287 74614975 + Dda1 protein_coding processed_transcript MGP_C57BL6NJ_T0088840.1 MGP_C57BL6NJ_G0033901.1 mouse_genomes_project 8 17000809 17005632 - MGP_C57BL6NJ_P0088840 Defb37 protein_coding protein_coding MGP_C57BL6NJ_T0005515.1 MGP_C57BL6NJ_G0004669.1 mouse_genomes_project 8 46482425 46583384 - Sorbs2os antisense antisense MGP_C57BL6NJ_T0018939.1 MGP_C57BL6NJ_G0016111.1 mouse_genomes_project 8 80084709 80428374 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018940.1 MGP_C57BL6NJ_G0016111.1 mouse_genomes_project 8 80270574 80428562 - processed_transcript processed_transcript MGP_C57BL6NJ_T0018941.1 MGP_C57BL6NJ_G0016111.1 mouse_genomes_project 8 80366441 80429010 - processed_transcript retained_intron MGP_C57BL6NJ_T0002482.1 MGP_C57BL6NJ_G0002370.1 mouse_genomes_project 8 127600366 127601891 + TEC TEC MGP_C57BL6NJ_T0090118.1 MGP_C57BL6NJ_G0034329.1 mouse_genomes_project 8 87620402 87625361 + MGP_C57BL6NJ_P0090118 Ndufb7 protein_coding protein_coding MGP_C57BL6NJ_T0090119.1 MGP_C57BL6NJ_G0034329.1 mouse_genomes_project 8 87620489 87625361 + Ndufb7 protein_coding retained_intron MGP_C57BL6NJ_T0090845.1 MGP_C57BL6NJ_G0034568.1 mouse_genomes_project 8 112307364 112309626 - MGP_C57BL6NJ_P0090845 Ddx28 protein_coding protein_coding MGP_C57BL6NJ_T0088533.1 MGP_C57BL6NJ_G0033808.1 mouse_genomes_project 8 669109 674098 + MGP_C57BL6NJ_P0088533 Trappc5 protein_coding protein_coding MGP_C57BL6NJ_T0088616.1 MGP_C57BL6NJ_G0033832.1 mouse_genomes_project 8 2166805 2187096 - MGP_C57BL6NJ_P0088616 Slc10a2 protein_coding protein_coding MGP_C57BL6NJ_T0009255.1 MGP_C57BL6NJ_G0007442.1 mouse_genomes_project 8 4637381 4685867 + Gm17215 lincRNA lincRNA MGP_C57BL6NJ_T0089656.1 MGP_C57BL6NJ_G0034183.1 mouse_genomes_project 8 72978355 72985498 + MGP_C57BL6NJ_P0089656 Tm6sf2 protein_coding protein_coding MGP_C57BL6NJ_T0089657.1 MGP_C57BL6NJ_G0034183.1 mouse_genomes_project 8 72978363 72985484 + MGP_C57BL6NJ_P0089657 Tm6sf2 protein_coding protein_coding MGP_C57BL6NJ_T0089658.1 MGP_C57BL6NJ_G0034183.1 mouse_genomes_project 8 72979712 72981146 + Tm6sf2 protein_coding retained_intron MGP_C57BL6NJ_T0089659.1 MGP_C57BL6NJ_G0034183.1 mouse_genomes_project 8 72980860 72983561 + Tm6sf2 protein_coding retained_intron MGP_C57BL6NJ_T0089660.1 MGP_C57BL6NJ_G0034183.1 mouse_genomes_project 8 72982837 72984052 + Tm6sf2 protein_coding retained_intron MGP_C57BL6NJ_T0016406.1 MGP_C57BL6NJ_G0014451.1 mouse_genomes_project 8 11902462 11903069 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089577.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518222 71559594 + MGP_C57BL6NJ_P0089577 Ints10 protein_coding protein_coding MGP_C57BL6NJ_T0089578.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518228 71552697 + MGP_C57BL6NJ_P0089578 Ints10 protein_coding protein_coding MGP_C57BL6NJ_T0089579.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518249 71526519 + Ints10 protein_coding retained_intron MGP_C57BL6NJ_T0089580.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518249 71559592 + MGP_C57BL6NJ_P0089580 Ints10 protein_coding protein_coding MGP_C57BL6NJ_T0089581.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518267 71526519 + Ints10 protein_coding retained_intron MGP_C57BL6NJ_T0089582.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71518307 71559592 + MGP_C57BL6NJ_P0089582 Ints10 protein_coding protein_coding MGP_C57BL6NJ_T0089583.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71539575 71542240 + Ints10 protein_coding retained_intron MGP_C57BL6NJ_T0089584.1 MGP_C57BL6NJ_G0034157.1 mouse_genomes_project 8 71548313 71557685 + MGP_C57BL6NJ_P0089584 Ints10 protein_coding protein_coding MGP_C57BL6NJ_T0005550.1 MGP_C57BL6NJ_G0004698.1 mouse_genomes_project 8 117490259 117492099 + Gm15895 antisense antisense MGP_C57BL6NJ_T0088539.1 MGP_C57BL6NJ_G0033812.1 mouse_genomes_project 8 864020 870365 - MGP_C57BL6NJ_P0088539 Cd209e protein_coding protein_coding MGP_C57BL6NJ_T0090373.1 MGP_C57BL6NJ_G0034399.1 mouse_genomes_project 8 89771136 89808145 + MGP_C57BL6NJ_P0090373 Gpt2 protein_coding protein_coding MGP_C57BL6NJ_T0090374.1 MGP_C57BL6NJ_G0034399.1 mouse_genomes_project 8 89771167 89805419 + MGP_C57BL6NJ_P0090374 Gpt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090375.1 MGP_C57BL6NJ_G0034399.1 mouse_genomes_project 8 89771169 89771868 + Gpt2 protein_coding processed_transcript MGP_C57BL6NJ_T0090376.1 MGP_C57BL6NJ_G0034399.1 mouse_genomes_project 8 89796561 89802079 + Gpt2 protein_coding retained_intron MGP_C57BL6NJ_T0090377.1 MGP_C57BL6NJ_G0034399.1 mouse_genomes_project 8 89799993 89806265 + Gpt2 protein_coding processed_transcript MGP_C57BL6NJ_T0009391.1 MGP_C57BL6NJ_G0007543.1 mouse_genomes_project 8 129553168 129553995 - lincRNA lincRNA MGP_C57BL6NJ_T0089032.1 MGP_C57BL6NJ_G0033979.1 mouse_genomes_project 8 24801194 24821844 - MGP_C57BL6NJ_P0089032 Bag4 protein_coding protein_coding MGP_C57BL6NJ_T0011241.1 MGP_C57BL6NJ_G0009326.1 mouse_genomes_project 8 88128136 88128255 - Mir1199 miRNA miRNA MGP_C57BL6NJ_T0089585.1 MGP_C57BL6NJ_G0034158.1 mouse_genomes_project 8 71612059 71641079 + MGP_C57BL6NJ_P0089585 Lpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089586.1 MGP_C57BL6NJ_G0034158.1 mouse_genomes_project 8 71612161 71623554 + Lpl protein_coding retained_intron MGP_C57BL6NJ_T0089587.1 MGP_C57BL6NJ_G0034158.1 mouse_genomes_project 8 71612257 71640564 + MGP_C57BL6NJ_P0089587 Lpl protein_coding protein_coding MGP_C57BL6NJ_T0089588.1 MGP_C57BL6NJ_G0034158.1 mouse_genomes_project 8 71624616 71629692 + Lpl protein_coding processed_transcript MGP_C57BL6NJ_T0011228.1 MGP_C57BL6NJ_G0009313.1 mouse_genomes_project 8 67550958 67551042 - Gm24333 miRNA miRNA MGP_C57BL6NJ_T0011236.1 MGP_C57BL6NJ_G0009321.1 mouse_genomes_project 8 76276392 76276472 + Mir28b miRNA miRNA MGP_C57BL6NJ_T0090861.1 MGP_C57BL6NJ_G0034571.1 mouse_genomes_project 8 112476367 112490722 + MGP_C57BL6NJ_P0090861 Pla2g15 protein_coding protein_coding MGP_C57BL6NJ_T0016422.1 MGP_C57BL6NJ_G0014467.1 mouse_genomes_project 8 21888286 21888541 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005533.1 MGP_C57BL6NJ_G0004684.1 mouse_genomes_project 8 84358090 84360722 - 4930505O20Rik antisense antisense MGP_C57BL6NJ_T0100637.1 MGP_C57BL6NJ_G0038683.1 mouse_genomes_project 8 26669359 26669466 - Gm24410 snRNA snRNA MGP_C57BL6NJ_T0100646.1 MGP_C57BL6NJ_G0038692.1 mouse_genomes_project 8 53797482 53797673 - Gm25813 snRNA snRNA MGP_C57BL6NJ_T0090163.1 MGP_C57BL6NJ_G0034340.1 mouse_genomes_project 8 88074940 88104283 + MGP_C57BL6NJ_P0090163 Prkaca protein_coding protein_coding MGP_C57BL6NJ_T0089449.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 59724071 59901691 - MGP_C57BL6NJ_P0089449 Galntl6 protein_coding protein_coding MGP_C57BL6NJ_T0089450.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 59724079 60943001 - MGP_C57BL6NJ_P0089450 Galntl6 protein_coding protein_coding MGP_C57BL6NJ_T0089451.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 59744825 59791360 - Galntl6 protein_coding processed_transcript MGP_C57BL6NJ_T0089452.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 60399546 60941988 - Galntl6 protein_coding retained_intron MGP_C57BL6NJ_T0089453.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 60399632 60941937 - MGP_C57BL6NJ_P0089453 Galntl6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089454.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 60399752 60701588 - MGP_C57BL6NJ_P0089454 Galntl6 protein_coding protein_coding MGP_C57BL6NJ_T0089455.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 60477780 60701683 - Galntl6 protein_coding processed_transcript MGP_C57BL6NJ_T0089456.1 MGP_C57BL6NJ_G0034121.1 mouse_genomes_project 8 60518527 60942221 - MGP_C57BL6NJ_P0089456 Galntl6 protein_coding protein_coding MGP_C57BL6NJ_T0099526.1 MGP_C57BL6NJ_G0037578.1 mouse_genomes_project 8 129621838 129622505 - sense_intronic sense_intronic MGP_C57BL6NJ_T0090258.1 MGP_C57BL6NJ_G0034367.1 mouse_genomes_project 8 89036365 89040326 + MGP_C57BL6NJ_P0090258 Gadd45gip1 protein_coding protein_coding MGP_C57BL6NJ_T0016420.1 MGP_C57BL6NJ_G0014465.1 mouse_genomes_project 8 20450012 20450433 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101964.1 MGP_C57BL6NJ_G0040010.1 mouse_genomes_project 8 117526992 117527068 - Gm22193 snoRNA snoRNA MGP_C57BL6NJ_T0090760.1 MGP_C57BL6NJ_G0034531.1 mouse_genomes_project 8 111512107 111520355 + MGP_C57BL6NJ_P0090760 E2f4 protein_coding protein_coding MGP_C57BL6NJ_T0088769.1 MGP_C57BL6NJ_G0033880.1 mouse_genomes_project 8 11518881 11531624 + MGP_C57BL6NJ_P0088769 Upf3a protein_coding protein_coding MGP_C57BL6NJ_T0090625.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100318641 100321226 + MGP_C57BL6NJ_P0090625 Tepp protein_coding protein_coding MGP_C57BL6NJ_T0090626.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100318661 100328619 + MGP_C57BL6NJ_P0090626 Tepp protein_coding protein_coding MGP_C57BL6NJ_T0090627.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100319673 100329405 + MGP_C57BL6NJ_P0090627 Tepp protein_coding protein_coding MGP_C57BL6NJ_T0090628.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100319677 100329405 + MGP_C57BL6NJ_P0090628 Tepp protein_coding protein_coding MGP_C57BL6NJ_T0090629.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100328513 100334399 + Tepp protein_coding retained_intron MGP_C57BL6NJ_T0090630.1 MGP_C57BL6NJ_G0034478.1 mouse_genomes_project 8 100328571 100334287 + MGP_C57BL6NJ_P0090630 Tepp protein_coding protein_coding MGP_C57BL6NJ_T0090248.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88904878 88913149 - Nfix protein_coding processed_transcript MGP_C57BL6NJ_T0090250.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88909720 88912647 - Nfix protein_coding processed_transcript MGP_C57BL6NJ_T0090251.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88909720 88978337 - MGP_C57BL6NJ_P0090251 Nfix protein_coding protein_coding MGP_C57BL6NJ_T0090252.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88909721 88978728 - MGP_C57BL6NJ_P0090252 Nfix protein_coding protein_coding MGP_C57BL6NJ_T0090253.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88913544 89005216 - MGP_C57BL6NJ_P0090253 Nfix protein_coding protein_coding MGP_C57BL6NJ_T0090254.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88913564 88919258 - Nfix protein_coding retained_intron MGP_C57BL6NJ_T0090255.1 MGP_C57BL6NJ_G0034363.1 mouse_genomes_project 8 88918984 89005100 - MGP_C57BL6NJ_P0090255 Nfix protein_coding protein_coding MGP_C57BL6NJ_T0089519.1 MGP_C57BL6NJ_G0034137.1 mouse_genomes_project 8 67017250 67122882 - MGP_C57BL6NJ_P0089519 Cpe protein_coding protein_coding MGP_C57BL6NJ_T0091063.1 MGP_C57BL6NJ_G0034639.1 mouse_genomes_project 8 118523236 118546013 - MGP_C57BL6NJ_P0091063 Bcar1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091064.1 MGP_C57BL6NJ_G0034639.1 mouse_genomes_project 8 118523253 118557812 - MGP_C57BL6NJ_P0091064 Bcar1 protein_coding protein_coding MGP_C57BL6NJ_T0089518.1 MGP_C57BL6NJ_G0034136.1 mouse_genomes_project 8 66397756 66610340 - MGP_C57BL6NJ_P0089518 Tll1 protein_coding protein_coding MGP_C57BL6NJ_T0088782.1 MGP_C57BL6NJ_G0033887.1 mouse_genomes_project 8 11852365 11854495 + MGP_C57BL6NJ_P0088782 protein_coding protein_coding MGP_C57BL6NJ_T0016419.1 MGP_C57BL6NJ_G0014464.1 mouse_genomes_project 8 19543927 19544164 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090451.1 MGP_C57BL6NJ_G0034421.1 mouse_genomes_project 8 93670558 93671059 - MGP_C57BL6NJ_P0090451 protein_coding protein_coding MGP_C57BL6NJ_T0089486.1 MGP_C57BL6NJ_G0034129.1 mouse_genomes_project 8 63460386 63653782 + MGP_C57BL6NJ_P0089486 Sh3rf1 protein_coding protein_coding MGP_C57BL6NJ_T0090064.1 MGP_C57BL6NJ_G0034308.1 mouse_genomes_project 8 83072294 83109120 - MGP_C57BL6NJ_P0090064 Smad1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090065.1 MGP_C57BL6NJ_G0034308.1 mouse_genomes_project 8 83075469 83141404 - MGP_C57BL6NJ_P0090065 Smad1 protein_coding protein_coding MGP_C57BL6NJ_T0090066.1 MGP_C57BL6NJ_G0034308.1 mouse_genomes_project 8 83089245 83141404 - MGP_C57BL6NJ_P0090066 Smad1 protein_coding protein_coding MGP_C57BL6NJ_T0088834.1 MGP_C57BL6NJ_G0033899.1 mouse_genomes_project 8 16944556 16965237 - Xkr5 protein_coding processed_transcript MGP_C57BL6NJ_T0088835.1 MGP_C57BL6NJ_G0033899.1 mouse_genomes_project 8 16944556 16965341 - MGP_C57BL6NJ_P0088835 Xkr5 protein_coding protein_coding MGP_C57BL6NJ_T0088836.1 MGP_C57BL6NJ_G0033899.1 mouse_genomes_project 8 16944556 16965339 - MGP_C57BL6NJ_P0088836 Xkr5 protein_coding protein_coding MGP_C57BL6NJ_T0088837.1 MGP_C57BL6NJ_G0033899.1 mouse_genomes_project 8 16944559 16965282 - MGP_C57BL6NJ_P0088837 Xkr5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088838.1 MGP_C57BL6NJ_G0033899.1 mouse_genomes_project 8 16944915 16965303 - MGP_C57BL6NJ_P0088838 Xkr5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089270.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256390 46592803 + MGP_C57BL6NJ_P0089270 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089271.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256390 46592803 + MGP_C57BL6NJ_P0089271 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089272.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256390 46592803 + MGP_C57BL6NJ_P0089272 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089273.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256396 46539745 + Sorbs2 protein_coding retained_intron MGP_C57BL6NJ_T0089274.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256400 46556704 + MGP_C57BL6NJ_P0089274 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089275.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46256420 46538276 + MGP_C57BL6NJ_P0089275 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089276.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46383478 46506049 + MGP_C57BL6NJ_P0089276 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089277.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46383536 46592770 + MGP_C57BL6NJ_P0089277 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089278.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46383705 46506071 + MGP_C57BL6NJ_P0089278 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089279.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46383918 46407378 + Sorbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0089280.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46383934 46506874 + MGP_C57BL6NJ_P0089280 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089281.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416317 46585228 + MGP_C57BL6NJ_P0089281 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089282.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416695 46538276 + MGP_C57BL6NJ_P0089282 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089283.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416701 46592800 + MGP_C57BL6NJ_P0089283 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089284.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416721 46505908 + Sorbs2 protein_coding retained_intron MGP_C57BL6NJ_T0089285.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416734 46506831 + MGP_C57BL6NJ_P0089285 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089286.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416809 46502661 + Sorbs2 protein_coding retained_intron MGP_C57BL6NJ_T0089287.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46416829 46534051 + MGP_C57BL6NJ_P0089287 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089288.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46420018 46519332 + MGP_C57BL6NJ_P0089288 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089289.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46447337 46519381 + MGP_C57BL6NJ_P0089289 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089290.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46447341 46519341 + MGP_C57BL6NJ_P0089290 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089291.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46492058 46592809 + MGP_C57BL6NJ_P0089291 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089292.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46524637 46592801 + MGP_C57BL6NJ_P0089292 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089293.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46525375 46561033 + Sorbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0089294.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46531236 46554191 + MGP_C57BL6NJ_P0089294 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089295.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46531952 46554159 + MGP_C57BL6NJ_P0089295 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089296.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46533751 46537291 + Sorbs2 protein_coding retained_intron MGP_C57BL6NJ_T0089297.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46537066 46556378 + MGP_C57BL6NJ_P0089297 Sorbs2 protein_coding protein_coding MGP_C57BL6NJ_T0089298.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46565934 46568006 + Sorbs2 protein_coding retained_intron MGP_C57BL6NJ_T0089299.1 MGP_C57BL6NJ_G0034072.1 mouse_genomes_project 8 46569890 46571454 + Sorbs2 protein_coding processed_transcript MGP_C57BL6NJ_T0090398.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90958337 91057143 + MGP_C57BL6NJ_P0090398 Lonp2 protein_coding protein_coding MGP_C57BL6NJ_T0090399.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90958337 91064385 + MGP_C57BL6NJ_P0090399 Lonp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090400.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90958381 90977129 + Lonp2 protein_coding processed_transcript MGP_C57BL6NJ_T0090401.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90958399 91057143 + MGP_C57BL6NJ_P0090401 Lonp2 protein_coding protein_coding MGP_C57BL6NJ_T0090402.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90966859 91004458 + Lonp2 protein_coding processed_transcript MGP_C57BL6NJ_T0090403.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90987031 91057144 + MGP_C57BL6NJ_P0090403 Lonp2 protein_coding protein_coding MGP_C57BL6NJ_T0090404.1 MGP_C57BL6NJ_G0034405.1 mouse_genomes_project 8 90987031 91057144 + MGP_C57BL6NJ_P0090404 Lonp2 protein_coding protein_coding MGP_C57BL6NJ_T0088474.1 MGP_C57BL6NJ_G0033793.1 mouse_genomes_project 8 270989 326337 + MGP_C57BL6NJ_P0088474 A430078G23Rik protein_coding protein_coding MGP_C57BL6NJ_T0089163.1 MGP_C57BL6NJ_G0034036.1 mouse_genomes_project 8 36427618 36483764 + MGP_C57BL6NJ_P0089163 6430573F11Rik protein_coding protein_coding MGP_C57BL6NJ_T0089164.1 MGP_C57BL6NJ_G0034036.1 mouse_genomes_project 8 36427644 36485128 + MGP_C57BL6NJ_P0089164 6430573F11Rik protein_coding protein_coding MGP_C57BL6NJ_T0089165.1 MGP_C57BL6NJ_G0034036.1 mouse_genomes_project 8 36428252 36482399 + MGP_C57BL6NJ_P0089165 6430573F11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089166.1 MGP_C57BL6NJ_G0034036.1 mouse_genomes_project 8 36459263 36483821 + MGP_C57BL6NJ_P0089166 6430573F11Rik protein_coding protein_coding MGP_C57BL6NJ_T0089167.1 MGP_C57BL6NJ_G0034036.1 mouse_genomes_project 8 36476308 36483401 + 6430573F11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0090563.1 MGP_C57BL6NJ_G0034458.1 mouse_genomes_project 8 99457002 99498488 + MGP_C57BL6NJ_P0090563 Cpne2 protein_coding protein_coding MGP_C57BL6NJ_T0090564.1 MGP_C57BL6NJ_G0034458.1 mouse_genomes_project 8 99457051 99476774 + Cpne2 protein_coding retained_intron MGP_C57BL6NJ_T0090565.1 MGP_C57BL6NJ_G0034458.1 mouse_genomes_project 8 99457079 99477770 + Cpne2 protein_coding processed_transcript MGP_C57BL6NJ_T0090566.1 MGP_C57BL6NJ_G0034458.1 mouse_genomes_project 8 99457079 99498349 + MGP_C57BL6NJ_P0090566 Cpne2 protein_coding protein_coding MGP_C57BL6NJ_T0090567.1 MGP_C57BL6NJ_G0034458.1 mouse_genomes_project 8 99490609 99498073 + Cpne2 protein_coding retained_intron MGP_C57BL6NJ_T0099521.1 MGP_C57BL6NJ_G0037573.1 mouse_genomes_project 8 33592336 33593314 - Gm26978 sense_intronic sense_intronic MGP_C57BL6NJ_T0101915.1 MGP_C57BL6NJ_G0039961.1 mouse_genomes_project 8 16213742 16213852 - Gm25665 snoRNA snoRNA MGP_C57BL6NJ_T0088730.1 MGP_C57BL6NJ_G0033866.1 mouse_genomes_project 8 10850177 10869696 + MGP_C57BL6NJ_P0088730 Lamp1 protein_coding protein_coding MGP_C57BL6NJ_T0089413.1 MGP_C57BL6NJ_G0034107.1 mouse_genomes_project 8 56222173 56261419 + MGP_C57BL6NJ_P0089413 Asb5 protein_coding protein_coding MGP_C57BL6NJ_T0009312.1 MGP_C57BL6NJ_G0007489.1 mouse_genomes_project 8 85605892 85607089 - 4930579O11Rik lincRNA lincRNA MGP_C57BL6NJ_T0009313.1 MGP_C57BL6NJ_G0007489.1 mouse_genomes_project 8 85605920 85607135 - 4930579O11Rik lincRNA lincRNA MGP_C57BL6NJ_T0089086.1 MGP_C57BL6NJ_G0034004.1 mouse_genomes_project 8 30545264 30554711 + MGP_C57BL6NJ_P0089086 Dusp26 protein_coding protein_coding MGP_C57BL6NJ_T0089087.1 MGP_C57BL6NJ_G0034004.1 mouse_genomes_project 8 30545431 30554710 + MGP_C57BL6NJ_P0089087 Dusp26 protein_coding protein_coding MGP_C57BL6NJ_T0089088.1 MGP_C57BL6NJ_G0034004.1 mouse_genomes_project 8 30545597 30549896 + Dusp26 protein_coding retained_intron MGP_C57BL6NJ_T0089089.1 MGP_C57BL6NJ_G0034004.1 mouse_genomes_project 8 30549313 30554710 + MGP_C57BL6NJ_P0089089 Dusp26 protein_coding protein_coding MGP_C57BL6NJ_T0089090.1 MGP_C57BL6NJ_G0034004.1 mouse_genomes_project 8 30551671 30554255 + Dusp26 protein_coding processed_transcript MGP_C57BL6NJ_T0090873.1 MGP_C57BL6NJ_G0034577.1 mouse_genomes_project 8 112851634 112858914 + MGP_C57BL6NJ_P0090873 6030452D12Rik protein_coding protein_coding MGP_C57BL6NJ_T0088686.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10550745 10557090 + MGP_C57BL6NJ_P0088686 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088687.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10550766 10698546 + MGP_C57BL6NJ_P0088687 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088688.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10550887 10568071 + Mcf2l protein_coding processed_transcript MGP_C57BL6NJ_T0088689.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10593218 10700398 + MGP_C57BL6NJ_P0088689 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088690.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10593855 10700002 + MGP_C57BL6NJ_P0088690 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088691.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10593873 10671856 + Mcf2l protein_coding processed_transcript MGP_C57BL6NJ_T0088692.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10593937 10698802 + MGP_C57BL6NJ_P0088692 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088693.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10604595 10697670 + MGP_C57BL6NJ_P0088693 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088694.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10628220 10667847 + Mcf2l protein_coding retained_intron MGP_C57BL6NJ_T0088695.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10628254 10693522 + MGP_C57BL6NJ_P0088695 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088696.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10628415 10699999 + MGP_C57BL6NJ_P0088696 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088697.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10629717 10698768 + MGP_C57BL6NJ_P0088697 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088698.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10629785 10699994 + MGP_C57BL6NJ_P0088698 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088699.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10663970 10696961 + MGP_C57BL6NJ_P0088699 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088700.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10663975 10691039 + MGP_C57BL6NJ_P0088700 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088701.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10663990 10699998 + MGP_C57BL6NJ_P0088701 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088702.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10690986 10700020 + MGP_C57BL6NJ_P0088702 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088703.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10691002 10697587 + MGP_C57BL6NJ_P0088703 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088704.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10691310 10696932 + MGP_C57BL6NJ_P0088704 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088705.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10692554 10694858 + Mcf2l protein_coding retained_intron MGP_C57BL6NJ_T0088706.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10693053 10698492 + MGP_C57BL6NJ_P0088706 Mcf2l protein_coding protein_coding MGP_C57BL6NJ_T0088707.1 MGP_C57BL6NJ_G0033860.1 mouse_genomes_project 8 10696668 10698500 + Mcf2l protein_coding retained_intron MGP_C57BL6NJ_T0091474.1 MGP_C57BL6NJ_G0034762.1 mouse_genomes_project 8 132193793 132311712 + MGP_C57BL6NJ_P0091474 Galnt2 protein_coding protein_coding MGP_C57BL6NJ_T0091475.1 MGP_C57BL6NJ_G0034762.1 mouse_genomes_project 8 132193910 132298543 + Galnt2 protein_coding processed_transcript MGP_C57BL6NJ_T0091476.1 MGP_C57BL6NJ_G0034762.1 mouse_genomes_project 8 132258420 132287037 + Galnt2 protein_coding processed_transcript MGP_C57BL6NJ_T0091477.1 MGP_C57BL6NJ_G0034762.1 mouse_genomes_project 8 132258683 132311714 + Galnt2 protein_coding processed_transcript MGP_C57BL6NJ_T0011220.1 MGP_C57BL6NJ_G0009305.1 mouse_genomes_project 8 35678680 35678807 - Gm44474 miRNA miRNA MGP_C57BL6NJ_T0089150.1 MGP_C57BL6NJ_G0034026.1 mouse_genomes_project 8 34093150 34093594 + MGP_C57BL6NJ_P0089150 protein_coding protein_coding MGP_C57BL6NJ_T0089152.1 MGP_C57BL6NJ_G0034028.1 mouse_genomes_project 8 34664381 34808271 - MGP_C57BL6NJ_P0089152 Tnks protein_coding protein_coding MGP_C57BL6NJ_T0090759.1 MGP_C57BL6NJ_G0034530.1 mouse_genomes_project 8 111504368 111510543 - MGP_C57BL6NJ_P0090759 Exoc3l protein_coding protein_coding MGP_C57BL6NJ_T0088944.1 MGP_C57BL6NJ_G0033956.1 mouse_genomes_project 8 21996146 22008602 - MGP_C57BL6NJ_P0088944 Gins4 protein_coding protein_coding MGP_C57BL6NJ_T0088666.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10277642 10341014 - MGP_C57BL6NJ_P0088666 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088667.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10277642 10341163 - MGP_C57BL6NJ_P0088667 Tubgcp3 protein_coding protein_coding MGP_C57BL6NJ_T0088668.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10277644 10303033 - Tubgcp3 protein_coding retained_intron MGP_C57BL6NJ_T0088669.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10278532 10303006 - Tubgcp3 protein_coding retained_intron MGP_C57BL6NJ_T0088670.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10286828 10323898 - Tubgcp3 protein_coding retained_intron MGP_C57BL6NJ_T0088671.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10295436 10341038 - Tubgcp3 protein_coding retained_intron MGP_C57BL6NJ_T0088672.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10314961 10322180 - Tubgcp3 protein_coding retained_intron MGP_C57BL6NJ_T0088673.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10319257 10323912 - MGP_C57BL6NJ_P0088673 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088674.1 MGP_C57BL6NJ_G0033858.1 mouse_genomes_project 8 10319292 10340874 - MGP_C57BL6NJ_P0088674 Tubgcp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098907.1 MGP_C57BL6NJ_G0036971.1 mouse_genomes_project 8 128745791 128746881 + pseudogene pseudogene MGP_C57BL6NJ_T0089606.1 MGP_C57BL6NJ_G0034163.1 mouse_genomes_project 8 72076195 72091401 + MGP_C57BL6NJ_P0089606 D130040H23Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089607.1 MGP_C57BL6NJ_G0034163.1 mouse_genomes_project 8 72089096 72091483 + MGP_C57BL6NJ_P0089607 D130040H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0088901.1 MGP_C57BL6NJ_G0033945.1 mouse_genomes_project 8 21188747 21283290 + MGP_C57BL6NJ_P0088901 Slc20a2 protein_coding protein_coding MGP_C57BL6NJ_T0089806.1 MGP_C57BL6NJ_G0034221.1 mouse_genomes_project 8 73743128 73747017 - MGP_C57BL6NJ_P0089806 Ifi30 protein_coding protein_coding MGP_C57BL6NJ_T0101961.1 MGP_C57BL6NJ_G0040007.1 mouse_genomes_project 8 112284970 112285101 - Gm22972 snoRNA snoRNA MGP_C57BL6NJ_T0090602.1 MGP_C57BL6NJ_G0034470.1 mouse_genomes_project 8 99855761 99872627 - MGP_C57BL6NJ_P0090602 Ccdc102a protein_coding protein_coding MGP_C57BL6NJ_T0090603.1 MGP_C57BL6NJ_G0034470.1 mouse_genomes_project 8 99868091 99872050 - MGP_C57BL6NJ_P0090603 Ccdc102a protein_coding protein_coding MGP_C57BL6NJ_T0090952.1 MGP_C57BL6NJ_G0034606.1 mouse_genomes_project 8 116305867 116317156 - MGP_C57BL6NJ_P0090952 Atxn1l protein_coding protein_coding MGP_C57BL6NJ_T0091221.1 MGP_C57BL6NJ_G0034696.1 mouse_genomes_project 8 128168707 128198738 - MGP_C57BL6NJ_P0091221 1190005I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0091223.1 MGP_C57BL6NJ_G0034696.1 mouse_genomes_project 8 128168906 128213809 - MGP_C57BL6NJ_P0091223 1190005I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0091224.1 MGP_C57BL6NJ_G0034696.1 mouse_genomes_project 8 128169040 128198609 - MGP_C57BL6NJ_P0091224 1190005I06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091122.1 MGP_C57BL6NJ_G0034664.1 mouse_genomes_project 8 124196153 124302226 - MGP_C57BL6NJ_P0091122 Pkd1l2 protein_coding protein_coding MGP_C57BL6NJ_T0091123.1 MGP_C57BL6NJ_G0034664.1 mouse_genomes_project 8 124196153 124302226 - MGP_C57BL6NJ_P0091123 Pkd1l2 protein_coding protein_coding MGP_C57BL6NJ_T0091124.1 MGP_C57BL6NJ_G0034664.1 mouse_genomes_project 8 124209820 124239056 - Pkd1l2 protein_coding retained_intron MGP_C57BL6NJ_T0091125.1 MGP_C57BL6NJ_G0034664.1 mouse_genomes_project 8 124238510 124243620 - Pkd1l2 protein_coding retained_intron MGP_C57BL6NJ_T0088662.1 MGP_C57BL6NJ_G0033854.1 mouse_genomes_project 8 9917086 9918925 + MGP_C57BL6NJ_P0088662 A230072I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0089502.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64204418 64241963 + MGP_C57BL6NJ_P0089502 Ddx60 protein_coding protein_coding MGP_C57BL6NJ_T0089503.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64204420 64325059 + MGP_C57BL6NJ_P0089503 Ddx60 protein_coding protein_coding MGP_C57BL6NJ_T0089504.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64204420 64217532 + MGP_C57BL6NJ_P0089504 Ddx60 protein_coding protein_coding MGP_C57BL6NJ_T0089505.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64204420 64325053 + MGP_C57BL6NJ_P0089505 Ddx60 protein_coding protein_coding MGP_C57BL6NJ_T0089506.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64264685 64268857 + Ddx60 protein_coding retained_intron MGP_C57BL6NJ_T0089507.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64304509 64309156 + Ddx60 protein_coding retained_intron MGP_C57BL6NJ_T0089508.1 MGP_C57BL6NJ_G0034132.1 mouse_genomes_project 8 64310366 64320794 + Ddx60 protein_coding retained_intron MGP_C57BL6NJ_T0009315.1 MGP_C57BL6NJ_G0007491.1 mouse_genomes_project 8 88335997 88341142 - Gm26887 lincRNA lincRNA MGP_C57BL6NJ_T0099167.1 MGP_C57BL6NJ_G0037231.1 mouse_genomes_project 8 66561591 66561713 + Gm22586 rRNA rRNA MGP_C57BL6NJ_T0100656.1 MGP_C57BL6NJ_G0038702.1 mouse_genomes_project 8 80751729 80751901 + Gm23260 snRNA snRNA MGP_C57BL6NJ_T0088849.1 MGP_C57BL6NJ_G0033909.1 mouse_genomes_project 8 17210450 17211306 + MGP_C57BL6NJ_P0088849 Defb14 protein_coding protein_coding MGP_C57BL6NJ_T0100663.1 MGP_C57BL6NJ_G0038709.1 mouse_genomes_project 8 91009813 91009921 - Gm22305 snRNA snRNA MGP_C57BL6NJ_T0009297.1 MGP_C57BL6NJ_G0007476.1 mouse_genomes_project 8 63521521 63528874 - 1700001D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0016441.1 MGP_C57BL6NJ_G0014486.1 mouse_genomes_project 8 66158566 66159568 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009379.1 MGP_C57BL6NJ_G0007535.1 mouse_genomes_project 8 128667224 128698746 - Fendrr lincRNA lincRNA MGP_C57BL6NJ_T0009380.1 MGP_C57BL6NJ_G0007535.1 mouse_genomes_project 8 128671145 128672756 - Fendrr lincRNA lincRNA MGP_C57BL6NJ_T0009381.1 MGP_C57BL6NJ_G0007535.1 mouse_genomes_project 8 128671461 128698824 - Fendrr lincRNA lincRNA MGP_C57BL6NJ_T0091464.1 MGP_C57BL6NJ_G0034755.1 mouse_genomes_project 8 131754984 131777219 - MGP_C57BL6NJ_P0091464 Ccsap protein_coding protein_coding MGP_C57BL6NJ_T0091465.1 MGP_C57BL6NJ_G0034755.1 mouse_genomes_project 8 131754997 131777898 - MGP_C57BL6NJ_P0091465 Ccsap protein_coding protein_coding MGP_C57BL6NJ_T0005517.1 MGP_C57BL6NJ_G0004671.1 mouse_genomes_project 8 47902484 47913865 - 4930579M01Rik antisense antisense MGP_C57BL6NJ_T0101913.1 MGP_C57BL6NJ_G0039959.1 mouse_genomes_project 8 13047700 13047833 - Gm24231 snoRNA snoRNA MGP_C57BL6NJ_T0009394.1 MGP_C57BL6NJ_G0007545.1 mouse_genomes_project 8 131080141 131091198 + 4933417D19Rik lincRNA lincRNA MGP_C57BL6NJ_T0089247.1 MGP_C57BL6NJ_G0034059.1 mouse_genomes_project 8 43670087 43682548 + MGP_C57BL6NJ_P0089247 Triml2 protein_coding protein_coding MGP_C57BL6NJ_T0089470.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63117430 63161698 - MGP_C57BL6NJ_P0089470 Clcn3 protein_coding protein_coding MGP_C57BL6NJ_T0089471.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63117907 63130003 - Clcn3 protein_coding processed_transcript MGP_C57BL6NJ_T0089472.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63118942 63161825 - MGP_C57BL6NJ_P0089472 Clcn3 protein_coding protein_coding MGP_C57BL6NJ_T0089473.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63118969 63162310 - Clcn3 protein_coding retained_intron MGP_C57BL6NJ_T0089474.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63118969 63192845 - MGP_C57BL6NJ_P0089474 Clcn3 protein_coding protein_coding MGP_C57BL6NJ_T0089475.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63118969 63192845 - MGP_C57BL6NJ_P0089475 Clcn3 protein_coding protein_coding MGP_C57BL6NJ_T0089476.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63135331 63161856 - Clcn3 protein_coding retained_intron MGP_C57BL6NJ_T0089477.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63142424 63192850 - Clcn3 protein_coding retained_intron MGP_C57BL6NJ_T0089478.1 MGP_C57BL6NJ_G0034127.1 mouse_genomes_project 8 63145707 63192892 - Clcn3 protein_coding retained_intron MGP_C57BL6NJ_T0089694.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73147837 73162148 - MGP_C57BL6NJ_P0089694 Armc6 protein_coding protein_coding MGP_C57BL6NJ_T0089695.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73147863 73150455 - Armc6 protein_coding retained_intron MGP_C57BL6NJ_T0089696.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73148142 73149956 - Armc6 protein_coding retained_intron MGP_C57BL6NJ_T0089697.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73150851 73152843 - Armc6 protein_coding retained_intron MGP_C57BL6NJ_T0089698.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73152275 73162131 - Armc6 protein_coding retained_intron MGP_C57BL6NJ_T0089699.1 MGP_C57BL6NJ_G0034192.1 mouse_genomes_project 8 73152983 73161808 - MGP_C57BL6NJ_P0089699 Armc6 protein_coding protein_coding MGP_C57BL6NJ_T0005511.1 MGP_C57BL6NJ_G0004665.1 mouse_genomes_project 8 33517315 33538181 + Gm26632 antisense antisense MGP_C57BL6NJ_T0090582.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99756999 99782906 - MGP_C57BL6NJ_P0090582 Ciapin1 protein_coding protein_coding MGP_C57BL6NJ_T0090583.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99759020 99782985 - MGP_C57BL6NJ_P0090583 Ciapin1 protein_coding protein_coding MGP_C57BL6NJ_T0090584.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99762137 99763396 - Ciapin1 protein_coding retained_intron MGP_C57BL6NJ_T0090585.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99762223 99765917 - Ciapin1 protein_coding processed_transcript MGP_C57BL6NJ_T0090586.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99762913 99776498 - MGP_C57BL6NJ_P0090586 Ciapin1 protein_coding protein_coding MGP_C57BL6NJ_T0090587.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99763838 99765915 - Ciapin1 protein_coding retained_intron MGP_C57BL6NJ_T0090588.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99764418 99775780 - Ciapin1 protein_coding processed_transcript MGP_C57BL6NJ_T0090589.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99769151 99782892 - MGP_C57BL6NJ_P0090589 Ciapin1 protein_coding protein_coding MGP_C57BL6NJ_T0090590.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99775731 99782888 - Ciapin1 protein_coding processed_transcript MGP_C57BL6NJ_T0090591.1 MGP_C57BL6NJ_G0034466.1 mouse_genomes_project 8 99776491 99782669 - Ciapin1 protein_coding processed_transcript MGP_C57BL6NJ_T0101919.1 MGP_C57BL6NJ_G0039965.1 mouse_genomes_project 8 22065049 22065181 - Gm24335 snoRNA snoRNA MGP_C57BL6NJ_T0088748.1 MGP_C57BL6NJ_G0033873.1 mouse_genomes_project 8 11128600 11146586 + MGP_C57BL6NJ_P0088748 Grk1 protein_coding protein_coding MGP_C57BL6NJ_T0091137.1 MGP_C57BL6NJ_G0034671.1 mouse_genomes_project 8 125093505 125103876 - MGP_C57BL6NJ_P0091137 Mphosph6 protein_coding protein_coding MGP_C57BL6NJ_T0090950.1 MGP_C57BL6NJ_G0034604.1 mouse_genomes_project 8 116247238 116272050 - MGP_C57BL6NJ_P0090950 Ist1 protein_coding protein_coding MGP_C57BL6NJ_T0088621.1 MGP_C57BL6NJ_G0033836.1 mouse_genomes_project 8 6012445 6037106 - MGP_C57BL6NJ_P0088621 Arglu1 protein_coding protein_coding MGP_C57BL6NJ_T0016402.1 MGP_C57BL6NJ_G0014447.1 mouse_genomes_project 8 8323936 8324377 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089824.1 MGP_C57BL6NJ_G0034232.1 mouse_genomes_project 8 73927853 73929486 + MGP_C57BL6NJ_P0089824 protein_coding protein_coding MGP_C57BL6NJ_T0101923.1 MGP_C57BL6NJ_G0039969.1 mouse_genomes_project 8 30609103 30609207 - Snord13 snoRNA snoRNA MGP_C57BL6NJ_T0100647.1 MGP_C57BL6NJ_G0038693.1 mouse_genomes_project 8 55074905 55074967 + Gm27964 snRNA snRNA MGP_C57BL6NJ_T0091195.1 MGP_C57BL6NJ_G0034691.1 mouse_genomes_project 8 127569647 127592408 - MGP_C57BL6NJ_P0091195 Zdhhc7 protein_coding protein_coding MGP_C57BL6NJ_T0091196.1 MGP_C57BL6NJ_G0034691.1 mouse_genomes_project 8 127570955 127577294 - Zdhhc7 protein_coding retained_intron MGP_C57BL6NJ_T0091197.1 MGP_C57BL6NJ_G0034691.1 mouse_genomes_project 8 127575680 127578534 - Zdhhc7 protein_coding retained_intron MGP_C57BL6NJ_T0091198.1 MGP_C57BL6NJ_G0034691.1 mouse_genomes_project 8 127575870 127578727 - Zdhhc7 protein_coding retained_intron MGP_C57BL6NJ_T0091199.1 MGP_C57BL6NJ_G0034691.1 mouse_genomes_project 8 127583900 127591998 - Zdhhc7 protein_coding processed_transcript MGP_C57BL6NJ_T0102578.1 MGP_C57BL6NJ_G0040406.1 mouse_genomes_project 8 18527313 18549009 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0090193.1 MGP_C57BL6NJ_G0034354.1 mouse_genomes_project 8 88315542 88318362 - MGP_C57BL6NJ_P0090193 Nanos3 protein_coding protein_coding MGP_C57BL6NJ_T0090030.1 MGP_C57BL6NJ_G0034296.1 mouse_genomes_project 8 80807934 81097787 - MGP_C57BL6NJ_P0090030 Arhgap10 protein_coding protein_coding MGP_C57BL6NJ_T0091518.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133310985 + MGP_C57BL6NJ_P0091518 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091519.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133310985 + MGP_C57BL6NJ_P0091519 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091520.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133311692 + MGP_C57BL6NJ_P0091520 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091521.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133310985 + MGP_C57BL6NJ_P0091521 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091522.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133311692 + MGP_C57BL6NJ_P0091522 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091523.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086904 133310985 + MGP_C57BL6NJ_P0091523 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091524.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086918 133125314 + MGP_C57BL6NJ_P0091524 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091525.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133086939 133310982 + MGP_C57BL6NJ_P0091525 Disc1 protein_coding protein_coding MGP_C57BL6NJ_T0091526.1 MGP_C57BL6NJ_G0034778.1 mouse_genomes_project 8 133122295 133137001 + Disc1 protein_coding processed_transcript MGP_C57BL6NJ_T0011219.1 MGP_C57BL6NJ_G0009304.1 mouse_genomes_project 8 33906768 33906859 - Mir6395 miRNA miRNA MGP_C57BL6NJ_T0088737.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10964190 11000792 - MGP_C57BL6NJ_P0088737 Dcun1d2 protein_coding protein_coding MGP_C57BL6NJ_T0088738.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10964198 11001111 - MGP_C57BL6NJ_P0088738 Dcun1d2 protein_coding protein_coding MGP_C57BL6NJ_T0088739.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10964199 11000816 - MGP_C57BL6NJ_P0088739 Dcun1d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088740.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10964199 11000827 - MGP_C57BL6NJ_P0088740 Dcun1d2 protein_coding protein_coding MGP_C57BL6NJ_T0088741.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10964200 11001110 - Dcun1d2 protein_coding processed_transcript MGP_C57BL6NJ_T0088742.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10968138 11000819 - MGP_C57BL6NJ_P0088742 Dcun1d2 protein_coding protein_coding MGP_C57BL6NJ_T0088743.1 MGP_C57BL6NJ_G0033869.1 mouse_genomes_project 8 10989862 10994698 - Dcun1d2 protein_coding retained_intron MGP_C57BL6NJ_T0100662.1 MGP_C57BL6NJ_G0038708.1 mouse_genomes_project 8 90617452 90617550 + Gm24490 snRNA snRNA MGP_C57BL6NJ_T0088791.1 MGP_C57BL6NJ_G0033889.1 mouse_genomes_project 8 12533909 12536008 - MGP_C57BL6NJ_P0088791 protein_coding protein_coding MGP_C57BL6NJ_T0100668.1 MGP_C57BL6NJ_G0038714.1 mouse_genomes_project 8 104427763 104427870 + Gm24693 snRNA snRNA MGP_C57BL6NJ_T0090726.1 MGP_C57BL6NJ_G0034520.1 mouse_genomes_project 8 111184739 111340363 + MGP_C57BL6NJ_P0090726 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090727.1 MGP_C57BL6NJ_G0034520.1 mouse_genomes_project 8 111191166 111259665 + MGP_C57BL6NJ_P0090727 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089030.1 MGP_C57BL6NJ_G0033977.1 mouse_genomes_project 8 24758240 24789279 - MGP_C57BL6NJ_P0089030 Ddhd2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011272.1 MGP_C57BL6NJ_G0009357.1 mouse_genomes_project 8 117166327 117166387 + miRNA miRNA MGP_C57BL6NJ_T0090102.1 MGP_C57BL6NJ_G0034322.1 mouse_genomes_project 8 87202958 87204048 - MGP_C57BL6NJ_P0090102 Gm10645 protein_coding protein_coding MGP_C57BL6NJ_T0089178.1 MGP_C57BL6NJ_G0034039.1 mouse_genomes_project 8 37590654 38854476 - MGP_C57BL6NJ_P0089178 Sgcz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089179.1 MGP_C57BL6NJ_G0034039.1 mouse_genomes_project 8 37590910 38854476 - MGP_C57BL6NJ_P0089179 Sgcz protein_coding protein_coding MGP_C57BL6NJ_T0011249.1 MGP_C57BL6NJ_G0009334.1 mouse_genomes_project 8 89073367 89073429 + Mir7069 miRNA miRNA MGP_C57BL6NJ_T0090948.1 MGP_C57BL6NJ_G0034603.1 mouse_genomes_project 8 116185914 116248509 + MGP_C57BL6NJ_P0090948 protein_coding protein_coding MGP_C57BL6NJ_T0090949.1 MGP_C57BL6NJ_G0034603.1 mouse_genomes_project 8 116185914 116246638 + MGP_C57BL6NJ_P0090949 protein_coding protein_coding MGP_C57BL6NJ_T0002468.1 MGP_C57BL6NJ_G0002357.1 mouse_genomes_project 8 10972337 10973423 - TEC TEC MGP_C57BL6NJ_T0011225.1 MGP_C57BL6NJ_G0009310.1 mouse_genomes_project 8 53489985 53490130 - Gm44387 miRNA miRNA MGP_C57BL6NJ_T0090156.1 MGP_C57BL6NJ_G0034338.1 mouse_genomes_project 8 88024032 88048149 - MGP_C57BL6NJ_P0090156 Gm10644 protein_coding protein_coding MGP_C57BL6NJ_T0091549.1 MGP_C57BL6NJ_G0034789.1 mouse_genomes_project 8 135101569 135119054 - MGP_C57BL6NJ_P0091549 Tomm20 protein_coding protein_coding MGP_C57BL6NJ_T0090471.1 MGP_C57BL6NJ_G0034427.1 mouse_genomes_project 8 95875475 95977334 - MGP_C57BL6NJ_P0090471 Rpgrip1l protein_coding protein_coding MGP_C57BL6NJ_T0090472.1 MGP_C57BL6NJ_G0034427.1 mouse_genomes_project 8 95877401 95977294 - MGP_C57BL6NJ_P0090472 Rpgrip1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090473.1 MGP_C57BL6NJ_G0034427.1 mouse_genomes_project 8 95878622 95977283 - MGP_C57BL6NJ_P0090473 Rpgrip1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090474.1 MGP_C57BL6NJ_G0034427.1 mouse_genomes_project 8 95933323 95940454 - Rpgrip1l protein_coding retained_intron MGP_C57BL6NJ_T0090475.1 MGP_C57BL6NJ_G0034427.1 mouse_genomes_project 8 95972107 95975152 - MGP_C57BL6NJ_P0090475 Rpgrip1l protein_coding protein_coding MGP_C57BL6NJ_T0089589.1 MGP_C57BL6NJ_G0034159.1 mouse_genomes_project 8 71791787 71848102 - MGP_C57BL6NJ_P0089589 Slc18a1 protein_coding protein_coding MGP_C57BL6NJ_T0089590.1 MGP_C57BL6NJ_G0034159.1 mouse_genomes_project 8 71821174 71834644 - Slc18a1 protein_coding retained_intron MGP_C57BL6NJ_T0089591.1 MGP_C57BL6NJ_G0034159.1 mouse_genomes_project 8 71826289 71832924 - Slc18a1 protein_coding retained_intron MGP_C57BL6NJ_T0089592.1 MGP_C57BL6NJ_G0034159.1 mouse_genomes_project 8 71832516 71848115 - Slc18a1 protein_coding processed_transcript MGP_C57BL6NJ_T0089593.1 MGP_C57BL6NJ_G0034159.1 mouse_genomes_project 8 71832584 71848089 - Slc18a1 protein_coding processed_transcript MGP_C57BL6NJ_T0088653.1 MGP_C57BL6NJ_G0033852.1 mouse_genomes_project 8 9326219 9427157 + MGP_C57BL6NJ_P0088653 Arhgef7 protein_coding protein_coding MGP_C57BL6NJ_T0088654.1 MGP_C57BL6NJ_G0033852.1 mouse_genomes_project 8 9326366 9428815 + MGP_C57BL6NJ_P0088654 Arhgef7 protein_coding protein_coding MGP_C57BL6NJ_T0088655.1 MGP_C57BL6NJ_G0033852.1 mouse_genomes_project 8 9386978 9439315 + MGP_C57BL6NJ_P0088655 Arhgef7 protein_coding protein_coding MGP_C57BL6NJ_T0088656.1 MGP_C57BL6NJ_G0033852.1 mouse_genomes_project 8 9416467 9420441 + Arhgef7 protein_coding processed_transcript MGP_C57BL6NJ_T0088657.1 MGP_C57BL6NJ_G0033852.1 mouse_genomes_project 8 9434333 9436396 + Arhgef7 protein_coding processed_transcript MGP_C57BL6NJ_T0005554.1 MGP_C57BL6NJ_G0004702.1 mouse_genomes_project 8 121645374 121647943 - Gm16117 antisense antisense MGP_C57BL6NJ_T0009355.1 MGP_C57BL6NJ_G0007516.1 mouse_genomes_project 8 98616016 98681086 - Gm26843 lincRNA lincRNA MGP_C57BL6NJ_T0002487.1 MGP_C57BL6NJ_G0002375.1 mouse_genomes_project 8 131269638 131270291 - TEC TEC MGP_C57BL6NJ_T0089975.1 MGP_C57BL6NJ_G0034275.1 mouse_genomes_project 8 75561806 75564430 + MGP_C57BL6NJ_P0089975 Klf2 protein_coding protein_coding MGP_C57BL6NJ_T0088945.1 MGP_C57BL6NJ_G0033957.1 mouse_genomes_project 8 22012286 22029147 - MGP_C57BL6NJ_P0088945 Golga7 protein_coding protein_coding MGP_C57BL6NJ_T0088946.1 MGP_C57BL6NJ_G0033957.1 mouse_genomes_project 8 22012286 22029094 - MGP_C57BL6NJ_P0088946 Golga7 protein_coding protein_coding MGP_C57BL6NJ_T0088947.1 MGP_C57BL6NJ_G0033957.1 mouse_genomes_project 8 22014337 22017250 - Golga7 protein_coding retained_intron MGP_C57BL6NJ_T0091442.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310649 131347120 + MGP_C57BL6NJ_P0091442 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091443.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310649 131347120 + MGP_C57BL6NJ_P0091443 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091444.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310649 131344367 + MGP_C57BL6NJ_P0091444 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091445.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310659 131335860 + MGP_C57BL6NJ_P0091445 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091446.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310668 131347120 + MGP_C57BL6NJ_P0091446 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091447.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310671 131335796 + MGP_C57BL6NJ_P0091447 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091448.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310675 131338564 + MGP_C57BL6NJ_P0091448 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0091449.1 MGP_C57BL6NJ_G0034749.1 mouse_genomes_project 8 131310971 131347112 + MGP_C57BL6NJ_P0091449 Def8 protein_coding protein_coding MGP_C57BL6NJ_T0011260.1 MGP_C57BL6NJ_G0009345.1 mouse_genomes_project 8 99427420 99427480 + Mir7072 miRNA miRNA MGP_C57BL6NJ_T0090302.1 MGP_C57BL6NJ_G0034377.1 mouse_genomes_project 8 89172864 89183310 + MGP_C57BL6NJ_P0090302 Rtbdn protein_coding protein_coding MGP_C57BL6NJ_T0090303.1 MGP_C57BL6NJ_G0034377.1 mouse_genomes_project 8 89172864 89183310 + MGP_C57BL6NJ_P0090303 Rtbdn protein_coding protein_coding MGP_C57BL6NJ_T0090304.1 MGP_C57BL6NJ_G0034377.1 mouse_genomes_project 8 89175573 89183310 + MGP_C57BL6NJ_P0090304 Rtbdn protein_coding protein_coding MGP_C57BL6NJ_T0090305.1 MGP_C57BL6NJ_G0034377.1 mouse_genomes_project 8 89176894 89183218 + MGP_C57BL6NJ_P0090305 Rtbdn protein_coding protein_coding MGP_C57BL6NJ_T0100648.1 MGP_C57BL6NJ_G0038694.1 mouse_genomes_project 8 55074995 55075057 + Gm22841 snRNA snRNA MGP_C57BL6NJ_T0090546.1 MGP_C57BL6NJ_G0034453.1 mouse_genomes_project 8 99076168 99077405 + MGP_C57BL6NJ_P0090546 Mt1 protein_coding protein_coding MGP_C57BL6NJ_T0090117.1 MGP_C57BL6NJ_G0034328.1 mouse_genomes_project 8 87592816 87593912 + MGP_C57BL6NJ_P0090117 Olfr370 protein_coding protein_coding MGP_C57BL6NJ_T0088658.1 MGP_C57BL6NJ_G0033853.1 mouse_genomes_project 8 9444569 9461093 + MGP_C57BL6NJ_P0088658 Tex29 protein_coding protein_coding MGP_C57BL6NJ_T0088659.1 MGP_C57BL6NJ_G0033853.1 mouse_genomes_project 8 9444706 9448254 + Tex29 protein_coding processed_transcript MGP_C57BL6NJ_T0088660.1 MGP_C57BL6NJ_G0033853.1 mouse_genomes_project 8 9445014 9461037 + MGP_C57BL6NJ_P0088660 Tex29 protein_coding protein_coding MGP_C57BL6NJ_T0088661.1 MGP_C57BL6NJ_G0033853.1 mouse_genomes_project 8 9446156 9461089 + Tex29 protein_coding processed_transcript MGP_C57BL6NJ_T0090745.1 MGP_C57BL6NJ_G0034525.1 mouse_genomes_project 8 111472943 111479112 - MGP_C57BL6NJ_P0090745 Tradd protein_coding protein_coding MGP_C57BL6NJ_T0090746.1 MGP_C57BL6NJ_G0034525.1 mouse_genomes_project 8 111473847 111474778 - Tradd protein_coding retained_intron MGP_C57BL6NJ_T0090747.1 MGP_C57BL6NJ_G0034525.1 mouse_genomes_project 8 111473940 111479084 - MGP_C57BL6NJ_P0090747 Tradd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090748.1 MGP_C57BL6NJ_G0034525.1 mouse_genomes_project 8 111474414 111479106 - MGP_C57BL6NJ_P0090748 Tradd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101951.1 MGP_C57BL6NJ_G0039997.1 mouse_genomes_project 8 89286470 89286540 + Gm25506 snoRNA snoRNA MGP_C57BL6NJ_T0089723.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237099 73248030 + MGP_C57BL6NJ_P0089723 Cope protein_coding protein_coding MGP_C57BL6NJ_T0089724.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237322 73240999 + Cope protein_coding retained_intron MGP_C57BL6NJ_T0089725.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237350 73248033 + Cope protein_coding retained_intron MGP_C57BL6NJ_T0089726.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237354 73245065 + MGP_C57BL6NJ_P0089726 Cope protein_coding protein_coding MGP_C57BL6NJ_T0089727.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237374 73241504 + Cope protein_coding retained_intron MGP_C57BL6NJ_T0089728.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73237377 73247812 + MGP_C57BL6NJ_P0089728 Cope protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089729.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73240279 73248030 + MGP_C57BL6NJ_P0089729 Cope protein_coding protein_coding MGP_C57BL6NJ_T0089730.1 MGP_C57BL6NJ_G0034196.1 mouse_genomes_project 8 73243084 73248030 + MGP_C57BL6NJ_P0089730 Cope protein_coding protein_coding MGP_C57BL6NJ_T0090103.1 MGP_C57BL6NJ_G0034323.1 mouse_genomes_project 8 87203229 87314936 + MGP_C57BL6NJ_P0090103 Tbc1d9 protein_coding protein_coding MGP_C57BL6NJ_T0090104.1 MGP_C57BL6NJ_G0034323.1 mouse_genomes_project 8 87203737 87315448 + MGP_C57BL6NJ_P0090104 Tbc1d9 protein_coding protein_coding MGP_C57BL6NJ_T0090105.1 MGP_C57BL6NJ_G0034323.1 mouse_genomes_project 8 87300552 87313464 + Tbc1d9 protein_coding retained_intron MGP_C57BL6NJ_T0090181.1 MGP_C57BL6NJ_G0034349.1 mouse_genomes_project 8 88197385 88227526 + MGP_C57BL6NJ_P0090181 Rfx1 protein_coding protein_coding MGP_C57BL6NJ_T0088646.1 MGP_C57BL6NJ_G0033849.1 mouse_genomes_project 8 9122386 9131085 + MGP_C57BL6NJ_P0088646 Ing1 protein_coding protein_coding MGP_C57BL6NJ_T0091331.1 MGP_C57BL6NJ_G0034721.1 mouse_genomes_project 8 130208186 130218071 - MGP_C57BL6NJ_P0091331 Rnf166 protein_coding protein_coding MGP_C57BL6NJ_T0091332.1 MGP_C57BL6NJ_G0034721.1 mouse_genomes_project 8 130208901 130210267 - Rnf166 protein_coding retained_intron MGP_C57BL6NJ_T0091333.1 MGP_C57BL6NJ_G0034721.1 mouse_genomes_project 8 130210048 130217695 - Rnf166 protein_coding processed_transcript MGP_C57BL6NJ_T0005525.1 MGP_C57BL6NJ_G0004678.1 mouse_genomes_project 8 68994253 68997608 - Gm15356 antisense antisense MGP_C57BL6NJ_T0088620.1 MGP_C57BL6NJ_G0033835.1 mouse_genomes_project 8 6007689 6010609 + MGP_C57BL6NJ_P0088620 protein_coding protein_coding MGP_C57BL6NJ_T0091211.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 127741784 128108214 + MGP_C57BL6NJ_P0091211 Gse1 protein_coding protein_coding MGP_C57BL6NJ_T0091212.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 128025747 128136091 + MGP_C57BL6NJ_P0091212 Gse1 protein_coding protein_coding MGP_C57BL6NJ_T0091213.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 128090559 128134181 + MGP_C57BL6NJ_P0091213 Gse1 protein_coding protein_coding MGP_C57BL6NJ_T0091214.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 128092131 128134027 + MGP_C57BL6NJ_P0091214 Gse1 protein_coding protein_coding MGP_C57BL6NJ_T0091215.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 128125983 128127973 + Gse1 protein_coding retained_intron MGP_C57BL6NJ_T0091216.1 MGP_C57BL6NJ_G0034694.1 mouse_genomes_project 8 128126031 128129911 + Gse1 protein_coding processed_transcript MGP_C57BL6NJ_T0100654.1 MGP_C57BL6NJ_G0038700.1 mouse_genomes_project 8 75234223 75234381 + Gm25052 snRNA snRNA MGP_C57BL6NJ_T0009392.1 MGP_C57BL6NJ_G0007544.1 mouse_genomes_project 8 129984422 129987500 + Gm22 lincRNA lincRNA MGP_C57BL6NJ_T0009393.1 MGP_C57BL6NJ_G0007544.1 mouse_genomes_project 8 129984422 129987504 + Gm22 lincRNA lincRNA MGP_C57BL6NJ_T0100670.1 MGP_C57BL6NJ_G0038716.1 mouse_genomes_project 8 110559155 110559262 + Gm22148 snRNA snRNA MGP_C57BL6NJ_T0089457.1 MGP_C57BL6NJ_G0034122.1 mouse_genomes_project 8 60942115 60944658 + MGP_C57BL6NJ_P0089457 BC030500 protein_coding protein_coding MGP_C57BL6NJ_T0089458.1 MGP_C57BL6NJ_G0034122.1 mouse_genomes_project 8 60942617 60943557 + MGP_C57BL6NJ_P0089458 BC030500 protein_coding protein_coding MGP_C57BL6NJ_T0089966.1 MGP_C57BL6NJ_G0034271.1 mouse_genomes_project 8 75419091 75430987 + MGP_C57BL6NJ_P0089966 Hsh2d protein_coding protein_coding MGP_C57BL6NJ_T0089967.1 MGP_C57BL6NJ_G0034271.1 mouse_genomes_project 8 75423564 75431024 + MGP_C57BL6NJ_P0089967 Hsh2d protein_coding protein_coding MGP_C57BL6NJ_T0091037.1 MGP_C57BL6NJ_G0034633.1 mouse_genomes_project 8 118108171 118130437 - Fa2h protein_coding processed_transcript MGP_C57BL6NJ_T0091038.1 MGP_C57BL6NJ_G0034633.1 mouse_genomes_project 8 118108177 118165662 - MGP_C57BL6NJ_P0091038 Fa2h protein_coding protein_coding MGP_C57BL6NJ_T0091039.1 MGP_C57BL6NJ_G0034633.1 mouse_genomes_project 8 118108801 118111094 - Fa2h protein_coding processed_transcript MGP_C57BL6NJ_T0091040.1 MGP_C57BL6NJ_G0034633.1 mouse_genomes_project 8 118110506 118165656 - Fa2h protein_coding retained_intron MGP_C57BL6NJ_T0089822.1 MGP_C57BL6NJ_G0034230.1 mouse_genomes_project 8 73888288 73892706 - MGP_C57BL6NJ_P0089822 Rpl18a protein_coding protein_coding MGP_C57BL6NJ_T0098903.1 MGP_C57BL6NJ_G0036967.1 mouse_genomes_project 8 93670123 93670966 - pseudogene pseudogene MGP_C57BL6NJ_T0089104.1 MGP_C57BL6NJ_G0034013.1 mouse_genomes_project 8 33065749 33097418 + MGP_C57BL6NJ_P0089104 Purg protein_coding protein_coding MGP_C57BL6NJ_T0089105.1 MGP_C57BL6NJ_G0034013.1 mouse_genomes_project 8 33065749 33066956 + MGP_C57BL6NJ_P0089105 Purg protein_coding protein_coding MGP_C57BL6NJ_T0091270.1 MGP_C57BL6NJ_G0034707.1 mouse_genomes_project 8 129257726 129267787 + MGP_C57BL6NJ_P0091270 protein_coding protein_coding MGP_C57BL6NJ_T0091271.1 MGP_C57BL6NJ_G0034707.1 mouse_genomes_project 8 129257842 129260475 + protein_coding retained_intron MGP_C57BL6NJ_T0091272.1 MGP_C57BL6NJ_G0034707.1 mouse_genomes_project 8 129257846 129267073 + protein_coding retained_intron MGP_C57BL6NJ_T0090838.1 MGP_C57BL6NJ_G0034565.1 mouse_genomes_project 8 112270010 112275910 - MGP_C57BL6NJ_P0090838 Dpep3 protein_coding protein_coding MGP_C57BL6NJ_T0011970.1 MGP_C57BL6NJ_G0010055.1 mouse_genomes_project 8 602774 603101 + Gm22204 misc_RNA misc_RNA MGP_C57BL6NJ_T0005494.1 MGP_C57BL6NJ_G0004654.1 mouse_genomes_project 8 10577108 10593582 - Gm15351 antisense antisense MGP_C57BL6NJ_T0005495.1 MGP_C57BL6NJ_G0004654.1 mouse_genomes_project 8 10590488 10593721 - Gm15351 antisense antisense MGP_C57BL6NJ_T0005496.1 MGP_C57BL6NJ_G0004654.1 mouse_genomes_project 8 10592544 10593436 - Gm15351 antisense antisense MGP_C57BL6NJ_T0091508.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132861584 132892369 + MGP_C57BL6NJ_P0091508 Gnpat protein_coding protein_coding MGP_C57BL6NJ_T0091509.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132861623 132889040 + MGP_C57BL6NJ_P0091509 Gnpat protein_coding protein_coding MGP_C57BL6NJ_T0091510.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132885757 132889361 + Gnpat protein_coding retained_intron MGP_C57BL6NJ_T0091511.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132885826 132891860 + Gnpat protein_coding retained_intron MGP_C57BL6NJ_T0091512.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132887808 132889219 + Gnpat protein_coding retained_intron MGP_C57BL6NJ_T0091513.1 MGP_C57BL6NJ_G0034773.1 mouse_genomes_project 8 132889940 132891930 + Gnpat protein_coding retained_intron MGP_C57BL6NJ_T0090907.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713497 113763758 + Nfat5 protein_coding retained_intron MGP_C57BL6NJ_T0090908.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713497 113819721 + MGP_C57BL6NJ_P0090908 Nfat5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090909.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713497 113812414 + MGP_C57BL6NJ_P0090909 Nfat5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090910.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713536 113762447 + Nfat5 protein_coding retained_intron MGP_C57BL6NJ_T0090911.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713586 113812365 + MGP_C57BL6NJ_P0090911 Nfat5 protein_coding protein_coding MGP_C57BL6NJ_T0090912.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713586 113819712 + MGP_C57BL6NJ_P0090912 Nfat5 protein_coding protein_coding MGP_C57BL6NJ_T0090913.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113713853 113814109 + MGP_C57BL6NJ_P0090913 Nfat5 protein_coding protein_coding MGP_C57BL6NJ_T0090914.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113773697 113807592 + Nfat5 protein_coding retained_intron MGP_C57BL6NJ_T0090915.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113773697 113796092 + Nfat5 protein_coding retained_intron MGP_C57BL6NJ_T0090916.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113774102 113810846 + MGP_C57BL6NJ_P0090916 Nfat5 protein_coding protein_coding MGP_C57BL6NJ_T0090917.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113783630 113801957 + MGP_C57BL6NJ_P0090917 Nfat5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090918.1 MGP_C57BL6NJ_G0034592.1 mouse_genomes_project 8 113796171 113813717 + MGP_C57BL6NJ_P0090918 Nfat5 protein_coding protein_coding MGP_C57BL6NJ_T0088508.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610626 612801 - Pcp2 protein_coding retained_intron MGP_C57BL6NJ_T0088509.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610626 612801 - MGP_C57BL6NJ_P0088509 Pcp2 protein_coding protein_coding MGP_C57BL6NJ_T0088510.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610632 612801 - Pcp2 protein_coding retained_intron MGP_C57BL6NJ_T0088511.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610632 612258 - MGP_C57BL6NJ_P0088511 Pcp2 protein_coding protein_coding MGP_C57BL6NJ_T0088512.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610632 612538 - MGP_C57BL6NJ_P0088512 Pcp2 protein_coding protein_coding MGP_C57BL6NJ_T0088513.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610632 612305 - MGP_C57BL6NJ_P0088513 Pcp2 protein_coding protein_coding MGP_C57BL6NJ_T0088514.1 MGP_C57BL6NJ_G0033804.1 mouse_genomes_project 8 610635 612781 - Pcp2 protein_coding processed_transcript MGP_C57BL6NJ_T0091440.1 MGP_C57BL6NJ_G0034747.1 mouse_genomes_project 8 131268645 131274792 + MGP_C57BL6NJ_P0091440 Mc1r protein_coding protein_coding MGP_C57BL6NJ_T0090184.1 MGP_C57BL6NJ_G0034351.1 mouse_genomes_project 8 88264527 88272828 + MGP_C57BL6NJ_P0090184 Podnl1 protein_coding protein_coding MGP_C57BL6NJ_T0090185.1 MGP_C57BL6NJ_G0034351.1 mouse_genomes_project 8 88266356 88272817 + Podnl1 protein_coding retained_intron MGP_C57BL6NJ_T0009296.1 MGP_C57BL6NJ_G0007475.1 mouse_genomes_project 8 63193042 63195514 + B230317F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0089378.1 MGP_C57BL6NJ_G0034093.1 mouse_genomes_project 8 48607340 48615321 - MGP_C57BL6NJ_P0089378 Ing2 protein_coding protein_coding MGP_C57BL6NJ_T0089379.1 MGP_C57BL6NJ_G0034093.1 mouse_genomes_project 8 48607340 48613852 - MGP_C57BL6NJ_P0089379 Ing2 protein_coding protein_coding MGP_C57BL6NJ_T0089380.1 MGP_C57BL6NJ_G0034093.1 mouse_genomes_project 8 48608917 48615719 - MGP_C57BL6NJ_P0089380 Ing2 protein_coding protein_coding MGP_C57BL6NJ_T0005501.1 MGP_C57BL6NJ_G0004659.1 mouse_genomes_project 8 14309582 14312311 + Gm16347 antisense antisense MGP_C57BL6NJ_T0005502.1 MGP_C57BL6NJ_G0004659.1 mouse_genomes_project 8 14309593 14313448 + Gm16347 antisense antisense MGP_C57BL6NJ_T0088955.1 MGP_C57BL6NJ_G0033961.1 mouse_genomes_project 8 23314005 23315810 - MGP_C57BL6NJ_P0088955 1810011O10Rik protein_coding protein_coding MGP_C57BL6NJ_T0011974.1 MGP_C57BL6NJ_G0010059.1 mouse_genomes_project 8 4801332 4801531 + Gm27585 misc_RNA misc_RNA MGP_C57BL6NJ_T0090544.1 MGP_C57BL6NJ_G0034451.1 mouse_genomes_project 8 99046766 99048306 + MGP_C57BL6NJ_P0090544 Mt3 protein_coding protein_coding MGP_C57BL6NJ_T0101943.1 MGP_C57BL6NJ_G0039989.1 mouse_genomes_project 8 70679766 70679897 + Gm22018 snoRNA snoRNA MGP_C57BL6NJ_T0089050.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194119 25222242 + MGP_C57BL6NJ_P0089050 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089051.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194122 25222041 + MGP_C57BL6NJ_P0089051 protein_coding protein_coding MGP_C57BL6NJ_T0089052.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194127 25205002 + MGP_C57BL6NJ_P0089052 protein_coding protein_coding MGP_C57BL6NJ_T0089053.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194215 25205393 + MGP_C57BL6NJ_P0089053 protein_coding protein_coding MGP_C57BL6NJ_T0089054.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194229 25221751 + MGP_C57BL6NJ_P0089054 protein_coding protein_coding MGP_C57BL6NJ_T0089055.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194305 25223588 + MGP_C57BL6NJ_P0089055 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089056.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25194403 25205002 + MGP_C57BL6NJ_P0089056 protein_coding protein_coding MGP_C57BL6NJ_T0089057.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25195219 25200979 + MGP_C57BL6NJ_P0089057 protein_coding protein_coding MGP_C57BL6NJ_T0089058.1 MGP_C57BL6NJ_G0033988.1 mouse_genomes_project 8 25198616 25221995 + MGP_C57BL6NJ_P0089058 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088723.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10789666 10835475 + MGP_C57BL6NJ_P0088723 Cul4a protein_coding protein_coding MGP_C57BL6NJ_T0088724.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10789785 10808143 + MGP_C57BL6NJ_P0088724 Cul4a protein_coding protein_coding MGP_C57BL6NJ_T0088725.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10789981 10805667 + Cul4a protein_coding retained_intron MGP_C57BL6NJ_T0088726.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10807445 10834897 + MGP_C57BL6NJ_P0088726 Cul4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088727.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10824208 10826958 + Cul4a protein_coding retained_intron MGP_C57BL6NJ_T0088728.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10824672 10834154 + Cul4a protein_coding processed_transcript MGP_C57BL6NJ_T0088729.1 MGP_C57BL6NJ_G0033865.1 mouse_genomes_project 8 10831759 10835475 + Cul4a protein_coding retained_intron MGP_C57BL6NJ_T0089220.1 MGP_C57BL6NJ_G0034052.1 mouse_genomes_project 8 41269966 41286775 + Pdgfrl protein_coding retained_intron MGP_C57BL6NJ_T0089221.1 MGP_C57BL6NJ_G0034052.1 mouse_genomes_project 8 41269987 41334361 + MGP_C57BL6NJ_P0089221 Pdgfrl protein_coding protein_coding MGP_C57BL6NJ_T0090073.1 MGP_C57BL6NJ_G0034310.1 mouse_genomes_project 8 83453182 83483240 - MGP_C57BL6NJ_P0090073 Abce1 protein_coding protein_coding MGP_C57BL6NJ_T0089479.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207427 63350781 + MGP_C57BL6NJ_P0089479 Nek1 protein_coding protein_coding MGP_C57BL6NJ_T0089480.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207427 63350788 + MGP_C57BL6NJ_P0089480 Nek1 protein_coding protein_coding MGP_C57BL6NJ_T0089481.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207432 63253559 + Nek1 protein_coding retained_intron MGP_C57BL6NJ_T0089482.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207471 63326947 + Nek1 protein_coding retained_intron MGP_C57BL6NJ_T0089483.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207473 63239708 + Nek1 protein_coding retained_intron MGP_C57BL6NJ_T0089484.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63207473 63239167 + Nek1 protein_coding retained_intron MGP_C57BL6NJ_T0089485.1 MGP_C57BL6NJ_G0034128.1 mouse_genomes_project 8 63258850 63303117 + MGP_C57BL6NJ_P0089485 Nek1 protein_coding protein_coding MGP_C57BL6NJ_T0089064.1 MGP_C57BL6NJ_G0033991.1 mouse_genomes_project 8 26182882 26198499 + MGP_C57BL6NJ_P0089064 Erlin2 protein_coding protein_coding MGP_C57BL6NJ_T0016449.1 MGP_C57BL6NJ_G0014494.1 mouse_genomes_project 8 79749184 79750192 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089322.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46828531 46950793 - MGP_C57BL6NJ_P0089322 Snx25 protein_coding protein_coding MGP_C57BL6NJ_T0089323.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46828546 46913271 - Snx25 protein_coding retained_intron MGP_C57BL6NJ_T0089324.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46828727 46876614 - MGP_C57BL6NJ_P0089324 Snx25 protein_coding protein_coding MGP_C57BL6NJ_T0089325.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46844678 46851727 - Snx25 protein_coding processed_transcript MGP_C57BL6NJ_T0089326.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46851350 46920670 - MGP_C57BL6NJ_P0089326 Snx25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089327.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46851394 46886023 - Snx25 protein_coding processed_transcript MGP_C57BL6NJ_T0089328.1 MGP_C57BL6NJ_G0034079.1 mouse_genomes_project 8 46876171 46901830 - Snx25 protein_coding retained_intron MGP_C57BL6NJ_T0090452.1 MGP_C57BL6NJ_G0034422.1 mouse_genomes_project 8 94840683 94943991 - MGP_C57BL6NJ_P0090452 Tox3 protein_coding protein_coding MGP_C57BL6NJ_T0090453.1 MGP_C57BL6NJ_G0034422.1 mouse_genomes_project 8 94846349 94943779 - MGP_C57BL6NJ_P0090453 Tox3 protein_coding protein_coding MGP_C57BL6NJ_T0090454.1 MGP_C57BL6NJ_G0034422.1 mouse_genomes_project 8 94851226 94943774 - MGP_C57BL6NJ_P0090454 Tox3 protein_coding protein_coding MGP_C57BL6NJ_T0011246.1 MGP_C57BL6NJ_G0009331.1 mouse_genomes_project 8 88352101 88352188 + Mir27a miRNA miRNA MGP_C57BL6NJ_T0018915.1 MGP_C57BL6NJ_G0016101.1 mouse_genomes_project 8 16651343 16679991 - Gm16725 processed_transcript processed_transcript MGP_C57BL6NJ_T0090106.1 MGP_C57BL6NJ_G0034324.1 mouse_genomes_project 8 87337260 87345379 + MGP_C57BL6NJ_P0090106 Ucp1 protein_coding protein_coding MGP_C57BL6NJ_T0089957.1 MGP_C57BL6NJ_G0034266.1 mouse_genomes_project 8 75323332 75331902 + MGP_C57BL6NJ_P0089957 Olfr372 protein_coding protein_coding MGP_C57BL6NJ_T0089155.1 MGP_C57BL6NJ_G0034031.1 mouse_genomes_project 8 35481618 35584054 + MGP_C57BL6NJ_P0089155 Mfhas1 protein_coding protein_coding MGP_C57BL6NJ_T0089156.1 MGP_C57BL6NJ_G0034031.1 mouse_genomes_project 8 35507953 35581626 + Mfhas1 protein_coding processed_transcript MGP_C57BL6NJ_T0089246.1 MGP_C57BL6NJ_G0034058.1 mouse_genomes_project 8 43615955 43628786 - MGP_C57BL6NJ_P0089246 Triml1 protein_coding protein_coding MGP_C57BL6NJ_T0088817.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 13746743 15461883 - MGP_C57BL6NJ_P0088817 Csmd1 protein_coding protein_coding MGP_C57BL6NJ_T0088818.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 13746751 13840158 - Csmd1 protein_coding retained_intron MGP_C57BL6NJ_T0088819.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 13945111 15461883 - Csmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0088820.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 14163753 15461883 - Csmd1 protein_coding retained_intron MGP_C57BL6NJ_T0088821.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 14218448 15462188 - Csmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0088822.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 15136558 15461987 - Csmd1 protein_coding retained_intron MGP_C57BL6NJ_T0088823.1 MGP_C57BL6NJ_G0033895.1 mouse_genomes_project 8 15298270 15461979 - Csmd1 protein_coding processed_transcript MGP_C57BL6NJ_T0018930.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59206854 59222995 - AV026068 processed_transcript retained_intron MGP_C57BL6NJ_T0018931.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59206854 59223326 - AV026068 processed_transcript lincRNA MGP_C57BL6NJ_T0018932.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59206854 59223450 - AV026068 processed_transcript lincRNA MGP_C57BL6NJ_T0018933.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59206854 59222916 - AV026068 processed_transcript lincRNA MGP_C57BL6NJ_T0018934.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59206860 59207948 - AV026068 processed_transcript lincRNA MGP_C57BL6NJ_T0018935.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59207832 59223421 - AV026068 processed_transcript retained_intron MGP_C57BL6NJ_T0018936.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59209528 59223358 - AV026068 processed_transcript retained_intron MGP_C57BL6NJ_T0018937.1 MGP_C57BL6NJ_G0016109.1 mouse_genomes_project 8 59216869 59223339 - AV026068 processed_transcript retained_intron MGP_C57BL6NJ_T0091586.1 MGP_C57BL6NJ_G0034796.1 mouse_genomes_project 8 137337251 137470408 + MGP_C57BL6NJ_P0091586 Ccdc7b protein_coding protein_coding MGP_C57BL6NJ_T0091587.1 MGP_C57BL6NJ_G0034796.1 mouse_genomes_project 8 137337257 137457051 + MGP_C57BL6NJ_P0091587 Ccdc7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091588.1 MGP_C57BL6NJ_G0034796.1 mouse_genomes_project 8 137337322 137470408 + MGP_C57BL6NJ_P0091588 Ccdc7b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091589.1 MGP_C57BL6NJ_G0034796.1 mouse_genomes_project 8 137337340 137470408 + MGP_C57BL6NJ_P0091589 Ccdc7b protein_coding protein_coding MGP_C57BL6NJ_T0091591.1 MGP_C57BL6NJ_G0034796.1 mouse_genomes_project 8 137408299 137457053 + Ccdc7b protein_coding processed_transcript MGP_C57BL6NJ_T0005513.1 MGP_C57BL6NJ_G0004667.1 mouse_genomes_project 8 41396364 41407952 + Gm16193 antisense antisense MGP_C57BL6NJ_T0090635.1 MGP_C57BL6NJ_G0034481.1 mouse_genomes_project 8 100364944 100389970 + MGP_C57BL6NJ_P0090635 Mmp15 protein_coding protein_coding MGP_C57BL6NJ_T0005483.1 MGP_C57BL6NJ_G0004645.1 mouse_genomes_project 8 171414 172352 + Gm16180 antisense antisense MGP_C57BL6NJ_T0005540.1 MGP_C57BL6NJ_G0004691.1 mouse_genomes_project 8 110720057 110736874 + 1700082M22Rik antisense antisense MGP_C57BL6NJ_T0005541.1 MGP_C57BL6NJ_G0004691.1 mouse_genomes_project 8 110730903 110736734 + 1700082M22Rik antisense antisense MGP_C57BL6NJ_T0101949.1 MGP_C57BL6NJ_G0039995.1 mouse_genomes_project 8 86406883 86407019 + Gm25138 snoRNA snoRNA MGP_C57BL6NJ_T0090692.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110562285 110574642 - Nae1 protein_coding processed_transcript MGP_C57BL6NJ_T0090693.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110562285 110586115 - MGP_C57BL6NJ_P0090693 Nae1 protein_coding protein_coding MGP_C57BL6NJ_T0090694.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110562285 110586114 - MGP_C57BL6NJ_P0090694 Nae1 protein_coding protein_coding MGP_C57BL6NJ_T0090695.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110562291 110568245 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090696.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110562294 110569299 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090697.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110564455 110568305 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090698.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110568792 110579376 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090699.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110571085 110574674 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090700.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110574365 110586066 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090701.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110574794 110578795 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0090702.1 MGP_C57BL6NJ_G0034506.1 mouse_genomes_project 8 110579490 110586092 - Nae1 protein_coding retained_intron MGP_C57BL6NJ_T0016423.1 MGP_C57BL6NJ_G0014468.1 mouse_genomes_project 8 27481482 27482470 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089895.1 MGP_C57BL6NJ_G0034252.1 mouse_genomes_project 8 74716487 74738410 + MGP_C57BL6NJ_P0089895 Slc27a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089807.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73748528 73757063 - MGP_C57BL6NJ_P0089807 Pik3r2 protein_coding protein_coding MGP_C57BL6NJ_T0089808.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73748813 73749741 - MGP_C57BL6NJ_P0089808 Pik3r2 protein_coding protein_coding MGP_C57BL6NJ_T0089809.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73748992 73750017 - Pik3r2 protein_coding retained_intron MGP_C57BL6NJ_T0089810.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73752343 73753514 - Pik3r2 protein_coding retained_intron MGP_C57BL6NJ_T0089811.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73752723 73755037 - MGP_C57BL6NJ_P0089811 Pik3r2 protein_coding protein_coding MGP_C57BL6NJ_T0089812.1 MGP_C57BL6NJ_G0034222.1 mouse_genomes_project 8 73755358 73757029 - Pik3r2 protein_coding processed_transcript MGP_C57BL6NJ_T0005556.1 MGP_C57BL6NJ_G0004704.1 mouse_genomes_project 8 122774952 122777148 + Gm15655 antisense antisense MGP_C57BL6NJ_T0011215.1 MGP_C57BL6NJ_G0009300.1 mouse_genomes_project 8 21903343 21903471 + Mir486 miRNA miRNA MGP_C57BL6NJ_T0091466.1 MGP_C57BL6NJ_G0034756.1 mouse_genomes_project 8 131771457 131771900 + MGP_C57BL6NJ_P0091466 protein_coding protein_coding MGP_C57BL6NJ_T0090120.1 MGP_C57BL6NJ_G0034330.1 mouse_genomes_project 8 87625434 87650671 - MGP_C57BL6NJ_P0090120 Tecr protein_coding protein_coding MGP_C57BL6NJ_T0090121.1 MGP_C57BL6NJ_G0034330.1 mouse_genomes_project 8 87625434 87650671 - MGP_C57BL6NJ_P0090121 Tecr protein_coding protein_coding MGP_C57BL6NJ_T0090122.1 MGP_C57BL6NJ_G0034330.1 mouse_genomes_project 8 87625434 87650609 - MGP_C57BL6NJ_P0090122 Tecr protein_coding protein_coding MGP_C57BL6NJ_T0091071.1 MGP_C57BL6NJ_G0034645.1 mouse_genomes_project 8 118812909 118842092 - MGP_C57BL6NJ_P0091071 Adat1 protein_coding protein_coding MGP_C57BL6NJ_T0091072.1 MGP_C57BL6NJ_G0034645.1 mouse_genomes_project 8 118817801 118842154 - MGP_C57BL6NJ_P0091072 Adat1 protein_coding protein_coding MGP_C57BL6NJ_T0089303.1 MGP_C57BL6NJ_G0034075.1 mouse_genomes_project 8 46730194 46756535 - MGP_C57BL6NJ_P0089303 1700029J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0089304.1 MGP_C57BL6NJ_G0034075.1 mouse_genomes_project 8 46730196 46756535 - MGP_C57BL6NJ_P0089304 1700029J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0009339.1 MGP_C57BL6NJ_G0007508.1 mouse_genomes_project 8 92604505 92604974 + 9430002A10Rik lincRNA lincRNA MGP_C57BL6NJ_T0009340.1 MGP_C57BL6NJ_G0007508.1 mouse_genomes_project 8 92604505 92604980 + 9430002A10Rik lincRNA lincRNA MGP_C57BL6NJ_T0011254.1 MGP_C57BL6NJ_G0009339.1 mouse_genomes_project 8 90921007 90921129 + Gm44348 miRNA miRNA MGP_C57BL6NJ_T0089986.1 MGP_C57BL6NJ_G0034282.1 mouse_genomes_project 8 75840990 75846852 - MGP_C57BL6NJ_P0089986 Smim7 protein_coding protein_coding MGP_C57BL6NJ_T0089987.1 MGP_C57BL6NJ_G0034282.1 mouse_genomes_project 8 75843289 75846813 - MGP_C57BL6NJ_P0089987 Smim7 protein_coding protein_coding MGP_C57BL6NJ_T0089988.1 MGP_C57BL6NJ_G0034282.1 mouse_genomes_project 8 75846351 75846826 - Smim7 protein_coding retained_intron MGP_C57BL6NJ_T0005488.1 MGP_C57BL6NJ_G0004650.1 mouse_genomes_project 8 9443073 9444496 - Gm15875 antisense antisense MGP_C57BL6NJ_T0091459.1 MGP_C57BL6NJ_G0034752.1 mouse_genomes_project 8 131411245 131429104 + MGP_C57BL6NJ_P0091459 Gas8 protein_coding protein_coding MGP_C57BL6NJ_T0099166.1 MGP_C57BL6NJ_G0037230.1 mouse_genomes_project 8 56552375 56552494 + n-R5s98 rRNA rRNA MGP_C57BL6NJ_T0016457.1 MGP_C57BL6NJ_G0014502.1 mouse_genomes_project 8 85097619 85098207 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090160.1 MGP_C57BL6NJ_G0034339.1 mouse_genomes_project 8 88048450 88072448 + MGP_C57BL6NJ_P0090160 Asf1b protein_coding protein_coding MGP_C57BL6NJ_T0090161.1 MGP_C57BL6NJ_G0034339.1 mouse_genomes_project 8 88048657 88070098 + Asf1b protein_coding processed_transcript MGP_C57BL6NJ_T0090162.1 MGP_C57BL6NJ_G0034339.1 mouse_genomes_project 8 88067292 88070796 + Asf1b protein_coding retained_intron MGP_C57BL6NJ_T0005566.1 MGP_C57BL6NJ_G0004713.1 mouse_genomes_project 8 132268443 132269819 - 1810008B01Rik antisense antisense MGP_C57BL6NJ_T0016465.1 MGP_C57BL6NJ_G0014510.1 mouse_genomes_project 8 93299654 93302009 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090852.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112453366 112460022 - MGP_C57BL6NJ_P0090852 Esrp2 protein_coding protein_coding MGP_C57BL6NJ_T0090853.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112455272 112459861 - MGP_C57BL6NJ_P0090853 Esrp2 protein_coding protein_coding MGP_C57BL6NJ_T0090854.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112455775 112456123 - Esrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0090855.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112455862 112457772 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0090856.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112456315 112457176 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0090857.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112456575 112457176 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0090858.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112456849 112458144 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0090859.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112457006 112457989 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0090860.1 MGP_C57BL6NJ_G0034570.1 mouse_genomes_project 8 112459230 112459733 - Esrp2 protein_coding retained_intron MGP_C57BL6NJ_T0088783.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 11857757 12639732 + MGP_C57BL6NJ_P0088783 Dlgap2 protein_coding protein_coding MGP_C57BL6NJ_T0088784.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 11857767 12640304 + MGP_C57BL6NJ_P0088784 Dlgap2 protein_coding protein_coding MGP_C57BL6NJ_T0088785.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 11948577 12639332 + MGP_C57BL6NJ_P0088785 Dlgap2 protein_coding protein_coding MGP_C57BL6NJ_T0088786.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 11948577 12639732 + MGP_C57BL6NJ_P0088786 Dlgap2 protein_coding protein_coding MGP_C57BL6NJ_T0088787.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 12161508 12289073 + Dlgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0088788.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 12161722 12312841 + Dlgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0088789.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 12161770 12624402 + Dlgap2 protein_coding retained_intron MGP_C57BL6NJ_T0088790.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 12531386 12551003 + Dlgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0088792.1 MGP_C57BL6NJ_G0033888.1 mouse_genomes_project 8 12567853 12640022 + Dlgap2 protein_coding processed_transcript MGP_C57BL6NJ_T0090971.1 MGP_C57BL6NJ_G0034616.1 mouse_genomes_project 8 116848482 116854032 + MGP_C57BL6NJ_P0090971 Cmtr2 protein_coding protein_coding MGP_C57BL6NJ_T0090972.1 MGP_C57BL6NJ_G0034616.1 mouse_genomes_project 8 116850806 116857304 + MGP_C57BL6NJ_P0090972 Cmtr2 protein_coding protein_coding MGP_C57BL6NJ_T0091492.1 MGP_C57BL6NJ_G0034767.1 mouse_genomes_project 8 132621886 132654181 - MGP_C57BL6NJ_P0091492 2310022B05Rik protein_coding protein_coding MGP_C57BL6NJ_T0088885.1 MGP_C57BL6NJ_G0033937.1 mouse_genomes_project 8 20813013 20856191 - MGP_C57BL6NJ_P0088885 Nek3 protein_coding protein_coding MGP_C57BL6NJ_T0088886.1 MGP_C57BL6NJ_G0033937.1 mouse_genomes_project 8 20813013 20856214 - MGP_C57BL6NJ_P0088886 Nek3 protein_coding protein_coding MGP_C57BL6NJ_T0088887.1 MGP_C57BL6NJ_G0033937.1 mouse_genomes_project 8 20813016 20852265 - MGP_C57BL6NJ_P0088887 Nek3 protein_coding protein_coding MGP_C57BL6NJ_T0088888.1 MGP_C57BL6NJ_G0033937.1 mouse_genomes_project 8 20813416 20817033 - Nek3 protein_coding retained_intron MGP_C57BL6NJ_T0089594.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71847525 71872143 + MGP_C57BL6NJ_P0089594 Atp6v1b2 protein_coding protein_coding MGP_C57BL6NJ_T0089595.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71847647 71866161 + Atp6v1b2 protein_coding retained_intron MGP_C57BL6NJ_T0089596.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71847666 71861135 + Atp6v1b2 protein_coding retained_intron MGP_C57BL6NJ_T0089597.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71847668 71855466 + Atp6v1b2 protein_coding retained_intron MGP_C57BL6NJ_T0089598.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71861098 71861949 + Atp6v1b2 protein_coding retained_intron MGP_C57BL6NJ_T0089599.1 MGP_C57BL6NJ_G0034160.1 mouse_genomes_project 8 71862013 71867138 + Atp6v1b2 protein_coding retained_intron MGP_C57BL6NJ_T0090038.1 MGP_C57BL6NJ_G0034299.1 mouse_genomes_project 8 81256793 81330853 - MGP_C57BL6NJ_P0090038 Ednra protein_coding protein_coding MGP_C57BL6NJ_T0090039.1 MGP_C57BL6NJ_G0034299.1 mouse_genomes_project 8 81263456 81330881 - Ednra protein_coding retained_intron MGP_C57BL6NJ_T0090797.1 MGP_C57BL6NJ_G0034545.1 mouse_genomes_project 8 111868912 111885700 + MGP_C57BL6NJ_P0090797 Fam65a protein_coding protein_coding MGP_C57BL6NJ_T0090339.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89309759 89313165 + MGP_C57BL6NJ_P0090339 Dhps protein_coding protein_coding MGP_C57BL6NJ_T0090340.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89309798 89313159 + MGP_C57BL6NJ_P0090340 Dhps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090341.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89309808 89310865 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0090342.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89310303 89311583 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0090343.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89311060 89312011 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0090344.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89311060 89313154 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0090345.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89311582 89312450 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0090346.1 MGP_C57BL6NJ_G0034388.1 mouse_genomes_project 8 89312701 89313154 + Dhps protein_coding retained_intron MGP_C57BL6NJ_T0016442.1 MGP_C57BL6NJ_G0014487.1 mouse_genomes_project 8 68326313 68326598 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089556.1 MGP_C57BL6NJ_G0034151.1 mouse_genomes_project 8 70127441 70128788 + MGP_C57BL6NJ_P0089556 Nat1 protein_coding protein_coding MGP_C57BL6NJ_T0090783.1 MGP_C57BL6NJ_G0034539.1 mouse_genomes_project 8 111636494 111672820 + Lrrc36 protein_coding processed_transcript MGP_C57BL6NJ_T0090784.1 MGP_C57BL6NJ_G0034539.1 mouse_genomes_project 8 111636545 111651036 + Lrrc36 protein_coding processed_transcript MGP_C57BL6NJ_T0090785.1 MGP_C57BL6NJ_G0034539.1 mouse_genomes_project 8 111636545 111696315 + MGP_C57BL6NJ_P0090785 Lrrc36 protein_coding protein_coding MGP_C57BL6NJ_T0090786.1 MGP_C57BL6NJ_G0034539.1 mouse_genomes_project 8 111651772 111696313 + MGP_C57BL6NJ_P0090786 Lrrc36 protein_coding protein_coding MGP_C57BL6NJ_T0090075.1 MGP_C57BL6NJ_G0034312.1 mouse_genomes_project 8 83752516 83776734 - Hhip protein_coding processed_transcript MGP_C57BL6NJ_T0090076.1 MGP_C57BL6NJ_G0034312.1 mouse_genomes_project 8 83756746 83853517 - MGP_C57BL6NJ_P0090076 Hhip protein_coding protein_coding MGP_C57BL6NJ_T0009326.1 MGP_C57BL6NJ_G0007501.1 mouse_genomes_project 8 91719713 91738262 - Gm27207 lincRNA lincRNA MGP_C57BL6NJ_T0088942.1 MGP_C57BL6NJ_G0033954.1 mouse_genomes_project 8 21915956 21921633 + MGP_C57BL6NJ_P0088942 Nkx6-3 protein_coding protein_coding MGP_C57BL6NJ_T0088475.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 329047 393733 + Arhgef18 protein_coding retained_intron MGP_C57BL6NJ_T0088476.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 329079 399694 + MGP_C57BL6NJ_P0088476 Arhgef18 protein_coding protein_coding MGP_C57BL6NJ_T0088477.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 329114 368657 + Arhgef18 protein_coding processed_transcript MGP_C57BL6NJ_T0088478.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 329114 369025 + MGP_C57BL6NJ_P0088478 Arhgef18 protein_coding protein_coding MGP_C57BL6NJ_T0088479.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 376377 399693 + Arhgef18 protein_coding retained_intron MGP_C57BL6NJ_T0088480.1 MGP_C57BL6NJ_G0033794.1 mouse_genomes_project 8 393850 397361 + Arhgef18 protein_coding retained_intron MGP_C57BL6NJ_T0088628.1 MGP_C57BL6NJ_G0033841.1 mouse_genomes_project 8 7452665 7484522 + MGP_C57BL6NJ_P0088628 Tnfsf13b protein_coding protein_coding MGP_C57BL6NJ_T0091126.1 MGP_C57BL6NJ_G0034665.1 mouse_genomes_project 8 124315632 124355565 + MGP_C57BL6NJ_P0091126 Bco1 protein_coding protein_coding MGP_C57BL6NJ_T0091127.1 MGP_C57BL6NJ_G0034665.1 mouse_genomes_project 8 124315643 124353063 + MGP_C57BL6NJ_P0091127 Bco1 protein_coding protein_coding MGP_C57BL6NJ_T0091128.1 MGP_C57BL6NJ_G0034665.1 mouse_genomes_project 8 124315776 124355161 + MGP_C57BL6NJ_P0091128 Bco1 protein_coding protein_coding MGP_C57BL6NJ_T0101925.1 MGP_C57BL6NJ_G0039971.1 mouse_genomes_project 8 39201769 39201902 - Gm23128 snoRNA snoRNA MGP_C57BL6NJ_T0002472.1 MGP_C57BL6NJ_G0002361.1 mouse_genomes_project 8 44865721 44866549 - TEC TEC MGP_C57BL6NJ_T0090048.1 MGP_C57BL6NJ_G0034301.1 mouse_genomes_project 8 82066008 82069644 - MGP_C57BL6NJ_P0090048 Pou4f2 protein_coding protein_coding MGP_C57BL6NJ_T0101973.1 MGP_C57BL6NJ_G0040019.1 mouse_genomes_project 8 135117979 135118113 - Gm26397 snoRNA snoRNA MGP_C57BL6NJ_T0088921.1 MGP_C57BL6NJ_G0033951.1 mouse_genomes_project 8 21517157 21536762 - MGP_C57BL6NJ_P0088921 Ap3m2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091018.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117778940 117806987 - MGP_C57BL6NJ_P0091018 Clec18a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091019.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117778940 117806987 - MGP_C57BL6NJ_P0091019 Clec18a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091020.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117778940 117806987 - MGP_C57BL6NJ_P0091020 Clec18a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091021.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117794429 117806761 - MGP_C57BL6NJ_P0091021 Clec18a protein_coding protein_coding MGP_C57BL6NJ_T0091022.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117794429 117806987 - MGP_C57BL6NJ_P0091022 Clec18a protein_coding protein_coding MGP_C57BL6NJ_T0091023.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117794430 117806987 - MGP_C57BL6NJ_P0091023 Clec18a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091024.1 MGP_C57BL6NJ_G0034628.1 mouse_genomes_project 8 117794430 117818652 - MGP_C57BL6NJ_P0091024 Clec18a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011276.1 MGP_C57BL6NJ_G0009361.1 mouse_genomes_project 8 117934484 117934566 + Gm23193 miRNA miRNA MGP_C57BL6NJ_T0090885.1 MGP_C57BL6NJ_G0034584.1 mouse_genomes_project 8 113334659 113419072 + MGP_C57BL6NJ_P0090885 Sntb2 protein_coding protein_coding MGP_C57BL6NJ_T0089216.1 MGP_C57BL6NJ_G0034051.1 mouse_genomes_project 8 41202745 41265100 + MGP_C57BL6NJ_P0089216 Slc7a2 protein_coding protein_coding MGP_C57BL6NJ_T0089217.1 MGP_C57BL6NJ_G0034051.1 mouse_genomes_project 8 41202911 41241728 + MGP_C57BL6NJ_P0089217 Slc7a2 protein_coding protein_coding MGP_C57BL6NJ_T0089218.1 MGP_C57BL6NJ_G0034051.1 mouse_genomes_project 8 41239543 41264805 + MGP_C57BL6NJ_P0089218 Slc7a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0089219.1 MGP_C57BL6NJ_G0034051.1 mouse_genomes_project 8 41241183 41260518 + MGP_C57BL6NJ_P0089219 Slc7a2 protein_coding protein_coding MGP_C57BL6NJ_T0091087.1 MGP_C57BL6NJ_G0034651.1 mouse_genomes_project 8 120643246 120806874 - MGP_C57BL6NJ_P0091087 Adamts18 protein_coding protein_coding MGP_C57BL6NJ_T0088763.1 MGP_C57BL6NJ_G0033878.1 mouse_genomes_project 8 11447614 11476480 + MGP_C57BL6NJ_P0088763 4932443I19Rik protein_coding protein_coding MGP_C57BL6NJ_T0089444.1 MGP_C57BL6NJ_G0034119.1 mouse_genomes_project 8 59448727 59464460 + MGP_C57BL6NJ_P0089444 protein_coding protein_coding MGP_C57BL6NJ_T0103558.1 MGP_C57BL6NJ_G0041350.1 mouse_genomes_project 8 19227588 19228587 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0089820.1 MGP_C57BL6NJ_G0034228.1 mouse_genomes_project 8 73857343 73862440 - MGP_C57BL6NJ_P0089820 Ccdc124 protein_coding protein_coding MGP_C57BL6NJ_T0089100.1 MGP_C57BL6NJ_G0034010.1 mouse_genomes_project 8 31374071 31481676 - MGP_C57BL6NJ_P0089100 Nrg1 protein_coding protein_coding MGP_C57BL6NJ_T0091062.1 MGP_C57BL6NJ_G0034638.1 mouse_genomes_project 8 118494221 118500145 - MGP_C57BL6NJ_P0091062 Ctrb1 protein_coding protein_coding MGP_C57BL6NJ_T0016433.1 MGP_C57BL6NJ_G0014478.1 mouse_genomes_project 8 41194849 41196049 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011218.1 MGP_C57BL6NJ_G0009303.1 mouse_genomes_project 8 25314463 25314548 + Gm44299 miRNA miRNA MGP_C57BL6NJ_T0090549.1 MGP_C57BL6NJ_G0034455.1 mouse_genomes_project 8 99239269 99276289 + MGP_C57BL6NJ_P0090549 Slc12a3 protein_coding protein_coding MGP_C57BL6NJ_T0099158.1 MGP_C57BL6NJ_G0037222.1 mouse_genomes_project 8 2150762 2150881 - n-R5s93 rRNA rRNA MGP_C57BL6NJ_T0088631.1 MGP_C57BL6NJ_G0033843.1 mouse_genomes_project 8 8523791 8545229 - MGP_C57BL6NJ_P0088631 Irs2 protein_coding protein_coding MGP_C57BL6NJ_T0091120.1 MGP_C57BL6NJ_G0034663.1 mouse_genomes_project 8 124182200 124194012 - MGP_C57BL6NJ_P0091120 Gcsh protein_coding protein_coding MGP_C57BL6NJ_T0091121.1 MGP_C57BL6NJ_G0034663.1 mouse_genomes_project 8 124184226 124191826 - Gcsh protein_coding processed_transcript MGP_C57BL6NJ_T0009373.1 MGP_C57BL6NJ_G0007529.1 mouse_genomes_project 8 127709773 127739478 - A330074K22Rik lincRNA lincRNA MGP_C57BL6NJ_T0089426.1 MGP_C57BL6NJ_G0034110.1 mouse_genomes_project 8 56640591 56772687 + MGP_C57BL6NJ_P0089426 Gpm6a protein_coding protein_coding MGP_C57BL6NJ_T0011248.1 MGP_C57BL6NJ_G0009333.1 mouse_genomes_project 8 88352254 88352337 - Mir3074-2 miRNA miRNA MGP_C57BL6NJ_T0091383.1 MGP_C57BL6NJ_G0034734.1 mouse_genomes_project 8 130932461 130937781 + MGP_C57BL6NJ_P0091383 Rpl13 protein_coding protein_coding MGP_C57BL6NJ_T0091384.1 MGP_C57BL6NJ_G0034734.1 mouse_genomes_project 8 130932762 130936178 + Rpl13 protein_coding retained_intron MGP_C57BL6NJ_T0091385.1 MGP_C57BL6NJ_G0034734.1 mouse_genomes_project 8 130932764 130937001 + Rpl13 protein_coding retained_intron MGP_C57BL6NJ_T0091386.1 MGP_C57BL6NJ_G0034734.1 mouse_genomes_project 8 130932764 130937781 + Rpl13 protein_coding retained_intron MGP_C57BL6NJ_T0089079.1 MGP_C57BL6NJ_G0033999.1 mouse_genomes_project 8 26561214 26583883 + MGP_C57BL6NJ_P0089079 Tex24 protein_coding protein_coding MGP_C57BL6NJ_T0101963.1 MGP_C57BL6NJ_G0040009.1 mouse_genomes_project 8 117523137 117523226 - Snord111 snoRNA snoRNA MGP_C57BL6NJ_T0089784.1 MGP_C57BL6NJ_G0034208.1 mouse_genomes_project 8 73490530 73549138 + MGP_C57BL6NJ_P0089784 Ell protein_coding protein_coding MGP_C57BL6NJ_T0011209.1 MGP_C57BL6NJ_G0009294.1 mouse_genomes_project 8 10886499 10886567 - Mir1968 miRNA miRNA MGP_C57BL6NJ_T0090489.1 MGP_C57BL6NJ_G0034433.1 mouse_genomes_project 8 97639287 97707780 + MGP_C57BL6NJ_P0090489 Lpcat2 protein_coding protein_coding MGP_C57BL6NJ_T0090490.1 MGP_C57BL6NJ_G0034433.1 mouse_genomes_project 8 97639417 97657288 + Lpcat2 protein_coding processed_transcript MGP_C57BL6NJ_T0090492.1 MGP_C57BL6NJ_G0034433.1 mouse_genomes_project 8 97692902 97706569 + Lpcat2 protein_coding processed_transcript MGP_C57BL6NJ_T0018961.1 MGP_C57BL6NJ_G0016121.1 mouse_genomes_project 8 130095863 130098272 + Gm20681 processed_transcript processed_transcript MGP_C57BL6NJ_T0009388.1 MGP_C57BL6NJ_G0007541.1 mouse_genomes_project 8 129331955 129332419 + Gm27030 lincRNA lincRNA MGP_C57BL6NJ_T0101926.1 MGP_C57BL6NJ_G0039972.1 mouse_genomes_project 8 39201770 39201902 - Gm23128 snoRNA snoRNA MGP_C57BL6NJ_T0018958.1 MGP_C57BL6NJ_G0016119.1 mouse_genomes_project 8 116513754 116521840 + Gm16349 processed_transcript processed_transcript MGP_C57BL6NJ_T0089459.1 MGP_C57BL6NJ_G0034123.1 mouse_genomes_project 8 62609289 62689154 - MGP_C57BL6NJ_P0089459 Gm10283 protein_coding protein_coding MGP_C57BL6NJ_T0091470.1 MGP_C57BL6NJ_G0034760.1 mouse_genomes_project 8 131935541 131965415 - MGP_C57BL6NJ_P0091470 Taf5l protein_coding protein_coding MGP_C57BL6NJ_T0091471.1 MGP_C57BL6NJ_G0034760.1 mouse_genomes_project 8 131935541 131962815 - MGP_C57BL6NJ_P0091471 Taf5l protein_coding protein_coding MGP_C57BL6NJ_T0009278.1 MGP_C57BL6NJ_G0007460.1 mouse_genomes_project 8 32534095 32607910 - Gm3985 lincRNA lincRNA MGP_C57BL6NJ_T0009279.1 MGP_C57BL6NJ_G0007460.1 mouse_genomes_project 8 32536065 32597768 - Gm3985 lincRNA lincRNA MGP_C57BL6NJ_T0088896.1 MGP_C57BL6NJ_G0033941.1 mouse_genomes_project 8 20988615 21080529 + MGP_C57BL6NJ_P0088896 Tpte protein_coding protein_coding MGP_C57BL6NJ_T0088844.1 MGP_C57BL6NJ_G0033905.1 mouse_genomes_project 8 17133832 17134051 - MGP_C57BL6NJ_P0088844 Defb35 protein_coding protein_coding MGP_C57BL6NJ_T0090827.1 MGP_C57BL6NJ_G0034559.1 mouse_genomes_project 8 112187081 112188538 + MGP_C57BL6NJ_P0090827 Nrn1l protein_coding protein_coding MGP_C57BL6NJ_T0090828.1 MGP_C57BL6NJ_G0034559.1 mouse_genomes_project 8 112187086 112188532 + MGP_C57BL6NJ_P0090828 Nrn1l protein_coding protein_coding MGP_C57BL6NJ_T0091200.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127606141 127664548 + MGP_C57BL6NJ_P0091200 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091201.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127606141 127650291 + MGP_C57BL6NJ_P0091201 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091202.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127606142 127664546 + MGP_C57BL6NJ_P0091202 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091203.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127640200 127641256 + MGP_C57BL6NJ_P0091203 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091204.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127640441 127648262 + MGP_C57BL6NJ_P0091204 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091205.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127640666 127662130 + MGP_C57BL6NJ_P0091205 6430548M08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091206.1 MGP_C57BL6NJ_G0034692.1 mouse_genomes_project 8 127655105 127660628 + 6430548M08Rik protein_coding processed_transcript MGP_C57BL6NJ_T0089083.1 MGP_C57BL6NJ_G0034002.1 mouse_genomes_project 8 26698186 26743786 + MGP_C57BL6NJ_P0089083 protein_coding protein_coding MGP_C57BL6NJ_T0089649.1 MGP_C57BL6NJ_G0034178.1 mouse_genomes_project 8 72791279 72799664 - MGP_C57BL6NJ_P0089649 Ndufa13 protein_coding protein_coding MGP_C57BL6NJ_T0089045.1 MGP_C57BL6NJ_G0033985.1 mouse_genomes_project 8 25041569 25060043 - MGP_C57BL6NJ_P0089045 Pomk protein_coding protein_coding MGP_C57BL6NJ_T0090180.1 MGP_C57BL6NJ_G0034348.1 mouse_genomes_project 8 88195785 88197837 - MGP_C57BL6NJ_P0090180 protein_coding protein_coding MGP_C57BL6NJ_T0091088.1 MGP_C57BL6NJ_G0034652.1 mouse_genomes_project 8 121105946 121126911 + MGP_C57BL6NJ_P0091088 Nudt7 protein_coding protein_coding MGP_C57BL6NJ_T0091089.1 MGP_C57BL6NJ_G0034652.1 mouse_genomes_project 8 121105963 121124474 + MGP_C57BL6NJ_P0091089 Nudt7 protein_coding protein_coding MGP_C57BL6NJ_T0091090.1 MGP_C57BL6NJ_G0034652.1 mouse_genomes_project 8 121106007 121124484 + MGP_C57BL6NJ_P0091090 Nudt7 protein_coding protein_coding MGP_C57BL6NJ_T0091091.1 MGP_C57BL6NJ_G0034652.1 mouse_genomes_project 8 121106030 121124478 + MGP_C57BL6NJ_P0091091 Nudt7 protein_coding protein_coding MGP_C57BL6NJ_T0091092.1 MGP_C57BL6NJ_G0034652.1 mouse_genomes_project 8 121106031 121120572 + MGP_C57BL6NJ_P0091092 Nudt7 protein_coding protein_coding MGP_C57BL6NJ_T0011217.1 MGP_C57BL6NJ_G0009302.1 mouse_genomes_project 8 24122297 24122406 - Mir8108 miRNA miRNA MGP_C57BL6NJ_T0101945.1 MGP_C57BL6NJ_G0039991.1 mouse_genomes_project 8 73890009 73890140 - Snora68 snoRNA snoRNA MGP_C57BL6NJ_T0091083.1 MGP_C57BL6NJ_G0034649.1 mouse_genomes_project 8 120577035 120586627 + MGP_C57BL6NJ_P0091083 Mon1b protein_coding protein_coding MGP_C57BL6NJ_T0091084.1 MGP_C57BL6NJ_G0034649.1 mouse_genomes_project 8 120577248 120586627 + MGP_C57BL6NJ_P0091084 Mon1b protein_coding protein_coding MGP_C57BL6NJ_T0101974.1 MGP_C57BL6NJ_G0040020.1 mouse_genomes_project 8 137020035 137020162 + Gm26100 snoRNA snoRNA MGP_C57BL6NJ_T0009277.1 MGP_C57BL6NJ_G0007459.1 mouse_genomes_project 8 31579419 31587639 + Gm26578 lincRNA lincRNA MGP_C57BL6NJ_T0005570.1 MGP_C57BL6NJ_G0004717.1 mouse_genomes_project 8 134718765 134748543 + Gm26759 antisense antisense MGP_C57BL6NJ_T0016440.1 MGP_C57BL6NJ_G0014485.1 mouse_genomes_project 8 63621361 63624403 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100638.1 MGP_C57BL6NJ_G0038684.1 mouse_genomes_project 8 31773172 31773287 + Gm22140 snRNA snRNA MGP_C57BL6NJ_T0088848.1 MGP_C57BL6NJ_G0033908.1 mouse_genomes_project 8 17185555 17187248 + MGP_C57BL6NJ_P0088848 Spag11a protein_coding protein_coding MGP_C57BL6NJ_T0009287.1 MGP_C57BL6NJ_G0007466.1 mouse_genomes_project 8 35474160 35482793 - Gm16793 lincRNA lincRNA MGP_C57BL6NJ_T0089711.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73216228 73219849 + MGP_C57BL6NJ_P0089711 Homer3 protein_coding protein_coding MGP_C57BL6NJ_T0089712.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73216228 73227680 + MGP_C57BL6NJ_P0089712 Homer3 protein_coding protein_coding MGP_C57BL6NJ_T0089713.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73216400 73227680 + MGP_C57BL6NJ_P0089713 Homer3 protein_coding protein_coding MGP_C57BL6NJ_T0089714.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73216435 73219621 + Homer3 protein_coding retained_intron MGP_C57BL6NJ_T0089715.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73218564 73227672 + MGP_C57BL6NJ_P0089715 Homer3 protein_coding protein_coding MGP_C57BL6NJ_T0089716.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73219249 73225057 + Homer3 protein_coding retained_intron MGP_C57BL6NJ_T0089717.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73222492 73224922 + Homer3 protein_coding retained_intron MGP_C57BL6NJ_T0089718.1 MGP_C57BL6NJ_G0034194.1 mouse_genomes_project 8 73224394 73226788 + MGP_C57BL6NJ_P0089718 Homer3 protein_coding protein_coding MGP_C57BL6NJ_T0103560.1 MGP_C57BL6NJ_G0041352.1 mouse_genomes_project 8 20006399 20006567 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0088960.1 MGP_C57BL6NJ_G0033963.1 mouse_genomes_project 8 23482904 23494415 - MGP_C57BL6NJ_P0088960 Ido1 protein_coding protein_coding MGP_C57BL6NJ_T0088961.1 MGP_C57BL6NJ_G0033963.1 mouse_genomes_project 8 23482904 23495758 - MGP_C57BL6NJ_P0088961 Ido1 protein_coding protein_coding MGP_C57BL6NJ_T0005534.1 MGP_C57BL6NJ_G0004685.1 mouse_genomes_project 8 88794476 88802216 - Gm16183 antisense antisense MGP_C57BL6NJ_T0089116.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33431016 33479173 + MGP_C57BL6NJ_P0089116 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089117.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33431225 33479173 + MGP_C57BL6NJ_P0089117 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089118.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33431316 33453233 + MGP_C57BL6NJ_P0089118 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089119.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33431494 33435012 + MGP_C57BL6NJ_P0089119 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089120.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33431522 33479182 + MGP_C57BL6NJ_P0089120 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089121.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33432626 33460577 + MGP_C57BL6NJ_P0089121 Gtf2e2 protein_coding protein_coding MGP_C57BL6NJ_T0089123.1 MGP_C57BL6NJ_G0034019.1 mouse_genomes_project 8 33467011 33478787 + Gtf2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0091098.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121435173 122396436 + MGP_C57BL6NJ_P0091098 Wwox protein_coding protein_coding MGP_C57BL6NJ_T0091099.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121435213 121885940 + MGP_C57BL6NJ_P0091099 Wwox protein_coding protein_coding MGP_C57BL6NJ_T0091100.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121435213 121724042 + MGP_C57BL6NJ_P0091100 Wwox protein_coding protein_coding MGP_C57BL6NJ_T0091101.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121435220 121449307 + Wwox protein_coding processed_transcript MGP_C57BL6NJ_T0091102.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121435220 121475823 + MGP_C57BL6NJ_P0091102 Wwox protein_coding protein_coding MGP_C57BL6NJ_T0091103.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121443728 121516122 + Wwox protein_coding processed_transcript MGP_C57BL6NJ_T0091104.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121612754 121711809 + Wwox protein_coding processed_transcript MGP_C57BL6NJ_T0091105.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121717641 122045316 + Wwox protein_coding processed_transcript MGP_C57BL6NJ_T0091106.1 MGP_C57BL6NJ_G0034655.1 mouse_genomes_project 8 121717641 122395871 + Wwox protein_coding processed_transcript MGP_C57BL6NJ_T0090703.1 MGP_C57BL6NJ_G0034507.1 mouse_genomes_project 8 110595084 110604543 + MGP_C57BL6NJ_P0090703 Car7 protein_coding protein_coding MGP_C57BL6NJ_T0090704.1 MGP_C57BL6NJ_G0034507.1 mouse_genomes_project 8 110602075 110603259 + Car7 protein_coding retained_intron MGP_C57BL6NJ_T0089311.1 MGP_C57BL6NJ_G0034077.1 mouse_genomes_project 8 46782296 46785262 - MGP_C57BL6NJ_P0089311 Ankrd37 protein_coding protein_coding MGP_C57BL6NJ_T0089312.1 MGP_C57BL6NJ_G0034077.1 mouse_genomes_project 8 46782305 46785262 - Ankrd37 protein_coding processed_transcript MGP_C57BL6NJ_T0089313.1 MGP_C57BL6NJ_G0034077.1 mouse_genomes_project 8 46782308 46784961 - Ankrd37 protein_coding retained_intron MGP_C57BL6NJ_T0089314.1 MGP_C57BL6NJ_G0034077.1 mouse_genomes_project 8 46782359 46783263 - Ankrd37 protein_coding processed_transcript MGP_C57BL6NJ_T0089315.1 MGP_C57BL6NJ_G0034077.1 mouse_genomes_project 8 46783526 46785244 - Ankrd37 protein_coding retained_intron MGP_C57BL6NJ_T0011210.1 MGP_C57BL6NJ_G0009295.1 mouse_genomes_project 8 11623257 11623351 + miRNA miRNA MGP_C57BL6NJ_T0016454.1 MGP_C57BL6NJ_G0014499.1 mouse_genomes_project 8 83477096 83478039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011973.1 MGP_C57BL6NJ_G0010058.1 mouse_genomes_project 8 1299453 1299737 + Gm26102 misc_RNA misc_RNA MGP_C57BL6NJ_T0088595.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352662 1394112 + MGP_C57BL6NJ_P0088595 Ccl25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088596.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352679 1382382 + MGP_C57BL6NJ_P0088596 Ccl25 protein_coding non_stop_decay MGP_C57BL6NJ_T0088597.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352682 1382382 + MGP_C57BL6NJ_P0088597 Ccl25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088598.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352685 1393768 + MGP_C57BL6NJ_P0088598 Ccl25 protein_coding protein_coding MGP_C57BL6NJ_T0088599.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352688 1387691 + MGP_C57BL6NJ_P0088599 Ccl25 protein_coding protein_coding MGP_C57BL6NJ_T0088600.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1352693 1360752 + Ccl25 protein_coding processed_transcript MGP_C57BL6NJ_T0088601.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1383181 1394134 + MGP_C57BL6NJ_P0088601 Ccl25 protein_coding protein_coding MGP_C57BL6NJ_T0088602.1 MGP_C57BL6NJ_G0033827.1 mouse_genomes_project 8 1383181 1392107 + MGP_C57BL6NJ_P0088602 Ccl25 protein_coding protein_coding MGP_C57BL6NJ_T0005521.1 MGP_C57BL6NJ_G0004674.1 mouse_genomes_project 8 60500591 60501624 + Gm15882 antisense antisense MGP_C57BL6NJ_T0089067.1 MGP_C57BL6NJ_G0033993.1 mouse_genomes_project 8 26248902 26289596 + MGP_C57BL6NJ_P0089067 Adgra2 protein_coding protein_coding MGP_C57BL6NJ_T0089068.1 MGP_C57BL6NJ_G0033993.1 mouse_genomes_project 8 26248917 26289597 + MGP_C57BL6NJ_P0089068 Adgra2 protein_coding protein_coding MGP_C57BL6NJ_T0089069.1 MGP_C57BL6NJ_G0033993.1 mouse_genomes_project 8 26278407 26283109 + MGP_C57BL6NJ_P0089069 Adgra2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089070.1 MGP_C57BL6NJ_G0033993.1 mouse_genomes_project 8 26281643 26287784 + MGP_C57BL6NJ_P0089070 Adgra2 protein_coding protein_coding MGP_C57BL6NJ_T0018947.1 MGP_C57BL6NJ_G0016114.1 mouse_genomes_project 8 89289614 89296870 - A230103J11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018948.1 MGP_C57BL6NJ_G0016114.1 mouse_genomes_project 8 89289643 89296853 - A230103J11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018955.1 MGP_C57BL6NJ_G0016118.1 mouse_genomes_project 8 112458447 112461148 + 1810019D21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018956.1 MGP_C57BL6NJ_G0016118.1 mouse_genomes_project 8 112458482 112460939 + 1810019D21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018957.1 MGP_C57BL6NJ_G0016118.1 mouse_genomes_project 8 112460112 112461573 + 1810019D21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0091504.1 MGP_C57BL6NJ_G0034770.1 mouse_genomes_project 8 132731228 132742672 - MGP_C57BL6NJ_P0091504 Fam89a protein_coding protein_coding MGP_C57BL6NJ_T0099228.1 MGP_C57BL6NJ_G0037292.1 mouse_genomes_project 8 812687 812977 - Rprl3 ribozyme ribozyme MGP_C57BL6NJ_T0088954.1 MGP_C57BL6NJ_G0033960.1 mouse_genomes_project 8 23026914 23040206 + MGP_C57BL6NJ_P0088954 protein_coding protein_coding MGP_C57BL6NJ_T0009272.1 MGP_C57BL6NJ_G0007455.1 mouse_genomes_project 8 26310983 26317733 + lincRNA lincRNA MGP_C57BL6NJ_T0011216.1 MGP_C57BL6NJ_G0009301.1 mouse_genomes_project 8 21903361 21903451 - Mir3107 miRNA miRNA MGP_C57BL6NJ_T0101930.1 MGP_C57BL6NJ_G0039976.1 mouse_genomes_project 8 46329886 46330018 - Gm23604 snoRNA snoRNA MGP_C57BL6NJ_T0090178.1 MGP_C57BL6NJ_G0034346.1 mouse_genomes_project 8 88164684 88166756 - MGP_C57BL6NJ_P0090178 Rln3 protein_coding protein_coding MGP_C57BL6NJ_T0100650.1 MGP_C57BL6NJ_G0038696.1 mouse_genomes_project 8 62220928 62221032 + Gm26164 snRNA snRNA MGP_C57BL6NJ_T0090049.1 MGP_C57BL6NJ_G0034302.1 mouse_genomes_project 8 82146657 82151467 - MGP_C57BL6NJ_P0090049 Rbmxl1 protein_coding protein_coding MGP_C57BL6NJ_T0088870.1 MGP_C57BL6NJ_G0033928.1 mouse_genomes_project 8 20538077 20538482 - MGP_C57BL6NJ_P0088870 Defb9 protein_coding protein_coding MGP_C57BL6NJ_T0016438.1 MGP_C57BL6NJ_G0014483.1 mouse_genomes_project 8 60700389 60701331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016470.1 MGP_C57BL6NJ_G0014515.1 mouse_genomes_project 8 102617762 102619161 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090959.1 MGP_C57BL6NJ_G0034608.1 mouse_genomes_project 8 116453602 116493554 + Phlpp2 protein_coding retained_intron MGP_C57BL6NJ_T0090960.1 MGP_C57BL6NJ_G0034608.1 mouse_genomes_project 8 116453679 116529652 + MGP_C57BL6NJ_P0090960 Phlpp2 protein_coding protein_coding MGP_C57BL6NJ_T0005514.1 MGP_C57BL6NJ_G0004668.1 mouse_genomes_project 8 45703007 45708177 - Gm2366 antisense antisense MGP_C57BL6NJ_T0089536.1 MGP_C57BL6NJ_G0034144.1 mouse_genomes_project 8 67530357 67532805 + MGP_C57BL6NJ_P0089536 Gm10663 protein_coding protein_coding MGP_C57BL6NJ_T0089661.1 MGP_C57BL6NJ_G0034184.1 mouse_genomes_project 8 72988960 72996294 + MGP_C57BL6NJ_P0089661 Hapln4 protein_coding protein_coding MGP_C57BL6NJ_T0088665.1 MGP_C57BL6NJ_G0033857.1 mouse_genomes_project 8 10230227 10260887 + MGP_C57BL6NJ_P0088665 Spaca7 protein_coding protein_coding MGP_C57BL6NJ_T0088515.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618330 634622 + MGP_C57BL6NJ_P0088515 Stxbp2 protein_coding protein_coding MGP_C57BL6NJ_T0088516.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618527 622870 + Stxbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0088517.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618528 623015 + Stxbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0088518.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618528 621300 + Stxbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0088519.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618532 622111 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088520.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618540 623118 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088521.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 618545 633773 + MGP_C57BL6NJ_P0088521 Stxbp2 protein_coding protein_coding MGP_C57BL6NJ_T0088522.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 620290 621442 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088523.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 622791 623095 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088524.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 624541 631951 + Stxbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0088525.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 628423 633772 + Stxbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0088526.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 631653 632884 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088527.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 631710 632969 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088528.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 631783 633766 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0088529.1 MGP_C57BL6NJ_G0033805.1 mouse_genomes_project 8 632558 633773 + Stxbp2 protein_coding retained_intron MGP_C57BL6NJ_T0089985.1 MGP_C57BL6NJ_G0034281.1 mouse_genomes_project 8 75764412 75824175 - MGP_C57BL6NJ_P0089985 Med26 protein_coding protein_coding MGP_C57BL6NJ_T0088861.1 MGP_C57BL6NJ_G0033919.1 mouse_genomes_project 8 19298821 19303637 - MGP_C57BL6NJ_P0088861 Gm6040 protein_coding protein_coding MGP_C57BL6NJ_T0089381.1 MGP_C57BL6NJ_G0034094.1 mouse_genomes_project 8 48615553 48617215 + MGP_C57BL6NJ_P0089381 protein_coding protein_coding MGP_C57BL6NJ_T0090706.1 MGP_C57BL6NJ_G0034509.1 mouse_genomes_project 8 110690444 110700700 - MGP_C57BL6NJ_P0090706 Cdh16 protein_coding protein_coding MGP_C57BL6NJ_T0100673.1 MGP_C57BL6NJ_G0038719.1 mouse_genomes_project 8 117082151 117082258 - Gm23627 snRNA snRNA MGP_C57BL6NJ_T0091077.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119474784 119787994 + Cntnap4 protein_coding retained_intron MGP_C57BL6NJ_T0091078.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119474784 119811214 + MGP_C57BL6NJ_P0091078 Cntnap4 protein_coding protein_coding MGP_C57BL6NJ_T0091079.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119474784 119811226 + MGP_C57BL6NJ_P0091079 Cntnap4 protein_coding protein_coding MGP_C57BL6NJ_T0091080.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119474796 119717631 + Cntnap4 protein_coding retained_intron MGP_C57BL6NJ_T0091081.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119639008 119644483 + Cntnap4 protein_coding processed_transcript MGP_C57BL6NJ_T0091082.1 MGP_C57BL6NJ_G0034648.1 mouse_genomes_project 8 119694388 119722092 + Cntnap4 protein_coding processed_transcript MGP_C57BL6NJ_T0090839.1 MGP_C57BL6NJ_G0034566.1 mouse_genomes_project 8 112281413 112288128 - MGP_C57BL6NJ_P0090839 Dpep2 protein_coding protein_coding MGP_C57BL6NJ_T0090840.1 MGP_C57BL6NJ_G0034566.1 mouse_genomes_project 8 112281414 112292835 - MGP_C57BL6NJ_P0090840 Dpep2 protein_coding protein_coding MGP_C57BL6NJ_T0090841.1 MGP_C57BL6NJ_G0034566.1 mouse_genomes_project 8 112281419 112288138 - MGP_C57BL6NJ_P0090841 Dpep2 protein_coding protein_coding MGP_C57BL6NJ_T0090842.1 MGP_C57BL6NJ_G0034566.1 mouse_genomes_project 8 112284216 112288101 - Dpep2 protein_coding retained_intron MGP_C57BL6NJ_T0090843.1 MGP_C57BL6NJ_G0034566.1 mouse_genomes_project 8 112284968 112288129 - Dpep2 protein_coding retained_intron MGP_C57BL6NJ_T0090087.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85255758 85693260 + MGP_C57BL6NJ_P0090087 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090088.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85255760 86039518 + MGP_C57BL6NJ_P0090088 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090089.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85255764 86102348 + MGP_C57BL6NJ_P0090089 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090090.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85255764 86099868 + MGP_C57BL6NJ_P0090090 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090091.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85255764 86100100 + MGP_C57BL6NJ_P0090091 Inpp4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090092.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85660502 86099873 + MGP_C57BL6NJ_P0090092 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090093.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85716138 85769237 + Inpp4b protein_coding processed_transcript MGP_C57BL6NJ_T0090094.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85719034 85848055 + Inpp4b protein_coding processed_transcript MGP_C57BL6NJ_T0090095.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85722615 86039518 + MGP_C57BL6NJ_P0090095 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090096.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85805908 85922347 + Inpp4b protein_coding processed_transcript MGP_C57BL6NJ_T0090097.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85819202 86099882 + MGP_C57BL6NJ_P0090097 Inpp4b protein_coding protein_coding MGP_C57BL6NJ_T0090098.1 MGP_C57BL6NJ_G0034318.1 mouse_genomes_project 8 85855369 85870112 + Inpp4b protein_coding processed_transcript MGP_C57BL6NJ_T0016475.1 MGP_C57BL6NJ_G0014520.1 mouse_genomes_project 8 111924740 111926522 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090456.1 MGP_C57BL6NJ_G0034424.1 mouse_genomes_project 8 95546419 95546896 - MGP_C57BL6NJ_P0090456 protein_coding protein_coding MGP_C57BL6NJ_T0089157.1 MGP_C57BL6NJ_G0034032.1 mouse_genomes_project 8 35680512 35739274 + MGP_C57BL6NJ_P0089157 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0088770.1 MGP_C57BL6NJ_G0033881.1 mouse_genomes_project 8 11606552 11628808 + MGP_C57BL6NJ_P0088770 Champ1 protein_coding protein_coding MGP_C57BL6NJ_T0088771.1 MGP_C57BL6NJ_G0033881.1 mouse_genomes_project 8 11606615 11626980 + MGP_C57BL6NJ_P0088771 Champ1 protein_coding protein_coding MGP_C57BL6NJ_T0089185.1 MGP_C57BL6NJ_G0034043.1 mouse_genomes_project 8 40604638 40679593 + MGP_C57BL6NJ_P0089185 Micu3 protein_coding protein_coding MGP_C57BL6NJ_T0089186.1 MGP_C57BL6NJ_G0034043.1 mouse_genomes_project 8 40605342 40681243 + MGP_C57BL6NJ_P0089186 Micu3 protein_coding protein_coding MGP_C57BL6NJ_T0089187.1 MGP_C57BL6NJ_G0034043.1 mouse_genomes_project 8 40656992 40670525 + Micu3 protein_coding retained_intron MGP_C57BL6NJ_T0091468.1 MGP_C57BL6NJ_G0034758.1 mouse_genomes_project 8 131823805 131875922 - MGP_C57BL6NJ_P0091468 Nup133 protein_coding protein_coding MGP_C57BL6NJ_T0002478.1 MGP_C57BL6NJ_G0002366.1 mouse_genomes_project 8 111897352 111899127 + TEC TEC MGP_C57BL6NJ_T0089663.1 MGP_C57BL6NJ_G0034186.1 mouse_genomes_project 8 73037637 73046023 - MGP_C57BL6NJ_P0089663 Rfxank protein_coding protein_coding MGP_C57BL6NJ_T0089665.1 MGP_C57BL6NJ_G0034186.1 mouse_genomes_project 8 73040218 73045914 - MGP_C57BL6NJ_P0089665 Rfxank protein_coding unknown_likely_coding MGP_C57BL6NJ_T0009343.1 MGP_C57BL6NJ_G0007510.1 mouse_genomes_project 8 96566622 96576348 + Gm28511 lincRNA lincRNA MGP_C57BL6NJ_T0090600.1 MGP_C57BL6NJ_G0034468.1 mouse_genomes_project 8 99808400 99816723 + MGP_C57BL6NJ_P0090600 Polr2c protein_coding protein_coding MGP_C57BL6NJ_T0102321.1 MGP_C57BL6NJ_G0040282.1 mouse_genomes_project 8 75102414 75104710 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102322.1 MGP_C57BL6NJ_G0040282.1 mouse_genomes_project 8 75103060 75103683 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0016461.1 MGP_C57BL6NJ_G0014506.1 mouse_genomes_project 8 86585022 86585980 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090322.1 MGP_C57BL6NJ_G0034381.1 mouse_genomes_project 8 89220404 89235219 + MGP_C57BL6NJ_P0090322 Hook2 protein_coding protein_coding MGP_C57BL6NJ_T0011284.1 MGP_C57BL6NJ_G0009369.1 mouse_genomes_project 8 128702445 128702543 - Gm27530 miRNA miRNA MGP_C57BL6NJ_T0091334.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218149 130226374 + MGP_C57BL6NJ_P0091334 Ctu2 protein_coding protein_coding MGP_C57BL6NJ_T0091335.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218215 130227420 + MGP_C57BL6NJ_P0091335 Ctu2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091336.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218219 130225023 + Ctu2 protein_coding retained_intron MGP_C57BL6NJ_T0091337.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218219 130221527 + MGP_C57BL6NJ_P0091337 Ctu2 protein_coding protein_coding MGP_C57BL6NJ_T0091338.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218226 130222657 + MGP_C57BL6NJ_P0091338 Ctu2 protein_coding protein_coding MGP_C57BL6NJ_T0091339.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130218249 130222262 + Ctu2 protein_coding retained_intron MGP_C57BL6NJ_T0091340.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130220006 130221559 + Ctu2 protein_coding retained_intron MGP_C57BL6NJ_T0091341.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130224203 130225022 + Ctu2 protein_coding retained_intron MGP_C57BL6NJ_T0091342.1 MGP_C57BL6NJ_G0034722.1 mouse_genomes_project 8 130224238 130225026 + MGP_C57BL6NJ_P0091342 Ctu2 protein_coding protein_coding MGP_C57BL6NJ_T0088920.1 MGP_C57BL6NJ_G0033950.1 mouse_genomes_project 8 21482093 21511448 + MGP_C57BL6NJ_P0088920 Plat protein_coding protein_coding MGP_C57BL6NJ_T0091365.1 MGP_C57BL6NJ_G0034730.1 mouse_genomes_project 8 130577625 130618037 + MGP_C57BL6NJ_P0091365 Acsf3 protein_coding protein_coding MGP_C57BL6NJ_T0011994.1 MGP_C57BL6NJ_G0010079.1 mouse_genomes_project 8 128296244 128296499 - Gm24239 misc_RNA misc_RNA MGP_C57BL6NJ_T0009292.1 MGP_C57BL6NJ_G0007471.1 mouse_genomes_project 8 48194546 48353673 - lincRNA lincRNA MGP_C57BL6NJ_T0011214.1 MGP_C57BL6NJ_G0009299.1 mouse_genomes_project 8 21861136 21861261 - Gm44365 miRNA miRNA MGP_C57BL6NJ_T0089159.1 MGP_C57BL6NJ_G0034034.1 mouse_genomes_project 8 36038403 36097115 + MGP_C57BL6NJ_P0089159 D8Ertd82e protein_coding protein_coding MGP_C57BL6NJ_T0089160.1 MGP_C57BL6NJ_G0034034.1 mouse_genomes_project 8 36038436 36050187 + D8Ertd82e protein_coding retained_intron MGP_C57BL6NJ_T0089161.1 MGP_C57BL6NJ_G0034034.1 mouse_genomes_project 8 36038436 36046322 + D8Ertd82e protein_coding retained_intron MGP_C57BL6NJ_T0091489.1 MGP_C57BL6NJ_G0034766.1 mouse_genomes_project 8 132554869 132594571 + MGP_C57BL6NJ_P0091489 Capn9 protein_coding protein_coding MGP_C57BL6NJ_T0091490.1 MGP_C57BL6NJ_G0034766.1 mouse_genomes_project 8 132554871 132565953 + MGP_C57BL6NJ_P0091490 Capn9 protein_coding protein_coding MGP_C57BL6NJ_T0091491.1 MGP_C57BL6NJ_G0034766.1 mouse_genomes_project 8 132587361 132590466 + Capn9 protein_coding processed_transcript MGP_C57BL6NJ_T0090863.1 MGP_C57BL6NJ_G0034573.1 mouse_genomes_project 8 112527110 112539917 - MGP_C57BL6NJ_P0090863 Slc7a6os protein_coding protein_coding MGP_C57BL6NJ_T0089527.1 MGP_C57BL6NJ_G0034139.1 mouse_genomes_project 8 67174475 67291012 - MGP_C57BL6NJ_P0089527 Klhl2 protein_coding protein_coding MGP_C57BL6NJ_T0090879.1 MGP_C57BL6NJ_G0034581.1 mouse_genomes_project 8 113259506 113273448 + MGP_C57BL6NJ_P0090879 Has3 protein_coding protein_coding MGP_C57BL6NJ_T0090880.1 MGP_C57BL6NJ_G0034581.1 mouse_genomes_project 8 113260100 113271716 + MGP_C57BL6NJ_P0090880 Has3 protein_coding protein_coding MGP_C57BL6NJ_T0090363.1 MGP_C57BL6NJ_G0034394.1 mouse_genomes_project 8 89499563 89500502 + MGP_C57BL6NJ_P0090363 Olfr371 protein_coding protein_coding MGP_C57BL6NJ_T0009346.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97056480 97087579 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009347.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97056480 97087290 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009348.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97056480 97078329 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009349.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97056692 97087350 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009350.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97066623 97087223 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009352.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97076388 97078329 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0009353.1 MGP_C57BL6NJ_G0007513.1 mouse_genomes_project 8 97078390 97087328 - Crnde lincRNA lincRNA MGP_C57BL6NJ_T0090928.1 MGP_C57BL6NJ_G0034595.1 mouse_genomes_project 8 113877743 114012069 + MGP_C57BL6NJ_P0090928 Wwp2 protein_coding protein_coding MGP_C57BL6NJ_T0091488.1 MGP_C57BL6NJ_G0034765.1 mouse_genomes_project 8 132535663 132548855 - MGP_C57BL6NJ_P0091488 Agt protein_coding protein_coding MGP_C57BL6NJ_T0101972.1 MGP_C57BL6NJ_G0040018.1 mouse_genomes_project 8 131356211 131356325 + Gm25428 snoRNA snoRNA MGP_C57BL6NJ_T0089954.1 MGP_C57BL6NJ_G0034265.1 mouse_genomes_project 8 75187305 75210343 - MGP_C57BL6NJ_P0089954 Cyp4f18 protein_coding protein_coding MGP_C57BL6NJ_T0089955.1 MGP_C57BL6NJ_G0034265.1 mouse_genomes_project 8 75187306 75191742 - Cyp4f18 protein_coding processed_transcript MGP_C57BL6NJ_T0089956.1 MGP_C57BL6NJ_G0034265.1 mouse_genomes_project 8 75188377 75192058 - Cyp4f18 protein_coding processed_transcript MGP_C57BL6NJ_T0016399.1 MGP_C57BL6NJ_G0014444.1 mouse_genomes_project 8 1000726 1014147 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090550.1 MGP_C57BL6NJ_G0034456.1 mouse_genomes_project 8 99297838 99306760 + MGP_C57BL6NJ_P0090550 Herpud1 protein_coding protein_coding MGP_C57BL6NJ_T0090551.1 MGP_C57BL6NJ_G0034456.1 mouse_genomes_project 8 99297895 99306741 + MGP_C57BL6NJ_P0090551 Herpud1 protein_coding protein_coding MGP_C57BL6NJ_T0090552.1 MGP_C57BL6NJ_G0034456.1 mouse_genomes_project 8 99298953 99303861 + Herpud1 protein_coding processed_transcript MGP_C57BL6NJ_T0090553.1 MGP_C57BL6NJ_G0034456.1 mouse_genomes_project 8 99298999 99303701 + Herpud1 protein_coding processed_transcript MGP_C57BL6NJ_T0090554.1 MGP_C57BL6NJ_G0034456.1 mouse_genomes_project 8 99304919 99306292 + Herpud1 protein_coding retained_intron MGP_C57BL6NJ_T0090680.1 MGP_C57BL6NJ_G0034498.1 mouse_genomes_project 8 110270156 110285613 + MGP_C57BL6NJ_P0090680 Cklf protein_coding protein_coding MGP_C57BL6NJ_T0090681.1 MGP_C57BL6NJ_G0034498.1 mouse_genomes_project 8 110270242 110284340 + MGP_C57BL6NJ_P0090681 Cklf protein_coding protein_coding MGP_C57BL6NJ_T0016398.1 MGP_C57BL6NJ_G0014443.1 mouse_genomes_project 8 858151 858451 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011205.1 MGP_C57BL6NJ_G0009290.1 mouse_genomes_project 8 9224406 9224449 - Mir7238 miRNA miRNA MGP_C57BL6NJ_T0089537.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68098658 69028019 + protein_coding processed_transcript MGP_C57BL6NJ_T0089538.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68098767 69027430 + MGP_C57BL6NJ_P0089538 protein_coding protein_coding MGP_C57BL6NJ_T0089539.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68098783 69027772 + MGP_C57BL6NJ_P0089539 protein_coding protein_coding MGP_C57BL6NJ_T0089540.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68098795 68480394 + protein_coding retained_intron MGP_C57BL6NJ_T0089541.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68098844 69029696 + MGP_C57BL6NJ_P0089541 protein_coding protein_coding MGP_C57BL6NJ_T0089542.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68099283 69028486 + MGP_C57BL6NJ_P0089542 protein_coding protein_coding MGP_C57BL6NJ_T0089543.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68479222 69029684 + MGP_C57BL6NJ_P0089543 protein_coding protein_coding MGP_C57BL6NJ_T0089544.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68654221 69029684 + MGP_C57BL6NJ_P0089544 protein_coding protein_coding MGP_C57BL6NJ_T0089545.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68654221 69029684 + MGP_C57BL6NJ_P0089545 protein_coding protein_coding MGP_C57BL6NJ_T0089546.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68930638 69028480 + MGP_C57BL6NJ_P0089546 protein_coding protein_coding MGP_C57BL6NJ_T0089547.1 MGP_C57BL6NJ_G0034145.1 mouse_genomes_project 8 68930645 69028490 + MGP_C57BL6NJ_P0089547 protein_coding protein_coding MGP_C57BL6NJ_T0005522.1 MGP_C57BL6NJ_G0004675.1 mouse_genomes_project 8 63337186 63422826 - Gm16178 antisense antisense MGP_C57BL6NJ_T0091011.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117752188 117755995 + MGP_C57BL6NJ_P0091011 Aars protein_coding protein_coding MGP_C57BL6NJ_T0091012.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117752923 117764888 + Aars protein_coding retained_intron MGP_C57BL6NJ_T0091013.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117752946 117777906 + MGP_C57BL6NJ_P0091013 Aars protein_coding protein_coding MGP_C57BL6NJ_T0091014.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117752960 117766507 + Aars protein_coding retained_intron MGP_C57BL6NJ_T0091015.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117760762 117761846 + Aars protein_coding retained_intron MGP_C57BL6NJ_T0091016.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117762115 117764886 + Aars protein_coding retained_intron MGP_C57BL6NJ_T0091017.1 MGP_C57BL6NJ_G0034627.1 mouse_genomes_project 8 117767675 117769767 + Aars protein_coding retained_intron MGP_C57BL6NJ_T0088732.1 MGP_C57BL6NJ_G0033868.1 mouse_genomes_project 8 10930486 10962398 - MGP_C57BL6NJ_P0088732 protein_coding protein_coding MGP_C57BL6NJ_T0088733.1 MGP_C57BL6NJ_G0033868.1 mouse_genomes_project 8 10944478 10962398 - MGP_C57BL6NJ_P0088733 protein_coding protein_coding MGP_C57BL6NJ_T0088734.1 MGP_C57BL6NJ_G0033868.1 mouse_genomes_project 8 10949527 10950351 - protein_coding retained_intron MGP_C57BL6NJ_T0088735.1 MGP_C57BL6NJ_G0033868.1 mouse_genomes_project 8 10949775 10962307 - MGP_C57BL6NJ_P0088735 protein_coding protein_coding MGP_C57BL6NJ_T0088736.1 MGP_C57BL6NJ_G0033868.1 mouse_genomes_project 8 10949907 10962332 - MGP_C57BL6NJ_P0088736 protein_coding protein_coding MGP_C57BL6NJ_T0011231.1 MGP_C57BL6NJ_G0009316.1 mouse_genomes_project 8 73778483 73778541 + Mir7240 miRNA miRNA MGP_C57BL6NJ_T0088984.1 MGP_C57BL6NJ_G0033969.1 mouse_genomes_project 8 23958610 23966386 + MGP_C57BL6NJ_P0088984 Tm2d2 protein_coding protein_coding MGP_C57BL6NJ_T0088879.1 MGP_C57BL6NJ_G0033935.1 mouse_genomes_project 8 20751591 20762396 + MGP_C57BL6NJ_P0088879 Alg11 protein_coding protein_coding MGP_C57BL6NJ_T0088880.1 MGP_C57BL6NJ_G0033935.1 mouse_genomes_project 8 20751592 20762396 + MGP_C57BL6NJ_P0088880 Alg11 protein_coding protein_coding MGP_C57BL6NJ_T0088881.1 MGP_C57BL6NJ_G0033935.1 mouse_genomes_project 8 20751610 20756318 + MGP_C57BL6NJ_P0088881 Alg11 protein_coding protein_coding MGP_C57BL6NJ_T0088882.1 MGP_C57BL6NJ_G0033935.1 mouse_genomes_project 8 20759784 20760648 + Alg11 protein_coding processed_transcript MGP_C57BL6NJ_T0088805.1 MGP_C57BL6NJ_G0033892.1 mouse_genomes_project 8 12813737 12836009 + MGP_C57BL6NJ_P0088805 Kbtbd11 protein_coding protein_coding MGP_C57BL6NJ_T0088806.1 MGP_C57BL6NJ_G0033892.1 mouse_genomes_project 8 12814018 12829769 + Kbtbd11 protein_coding processed_transcript MGP_C57BL6NJ_T0088807.1 MGP_C57BL6NJ_G0033892.1 mouse_genomes_project 8 12829965 12836009 + MGP_C57BL6NJ_P0088807 Kbtbd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088808.1 MGP_C57BL6NJ_G0033892.1 mouse_genomes_project 8 12835065 12835640 + Kbtbd11 protein_coding processed_transcript MGP_C57BL6NJ_T0011229.1 MGP_C57BL6NJ_G0009314.1 mouse_genomes_project 8 70279842 70279935 - Gm44391 miRNA miRNA MGP_C57BL6NJ_T0088585.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1284360 1300486 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0088586.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1284360 1300514 - MGP_C57BL6NJ_P0088586 Timm44 protein_coding protein_coding MGP_C57BL6NJ_T0088587.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1284378 1300472 - MGP_C57BL6NJ_P0088587 Timm44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088588.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1284613 1285365 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0088589.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1284729 1291646 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0088590.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1290713 1291583 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0088591.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1290894 1292263 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0088592.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1291944 1300483 - Timm44 protein_coding processed_transcript MGP_C57BL6NJ_T0088593.1 MGP_C57BL6NJ_G0033825.1 mouse_genomes_project 8 1292002 1300474 - Timm44 protein_coding retained_intron MGP_C57BL6NJ_T0090286.1 MGP_C57BL6NJ_G0034374.1 mouse_genomes_project 8 89110193 89114145 + MGP_C57BL6NJ_P0090286 Klf1 protein_coding protein_coding MGP_C57BL6NJ_T0091291.1 MGP_C57BL6NJ_G0034711.1 mouse_genomes_project 8 129581884 129610708 - MGP_C57BL6NJ_P0091291 Slc7a5 protein_coding protein_coding MGP_C57BL6NJ_T0091292.1 MGP_C57BL6NJ_G0034711.1 mouse_genomes_project 8 129584820 129585933 - Slc7a5 protein_coding retained_intron MGP_C57BL6NJ_T0091293.1 MGP_C57BL6NJ_G0034711.1 mouse_genomes_project 8 129590392 129599516 - Slc7a5 protein_coding processed_transcript MGP_C57BL6NJ_T0088618.1 MGP_C57BL6NJ_G0033834.1 mouse_genomes_project 8 5962493 6006662 - MGP_C57BL6NJ_P0088618 Efnb2 protein_coding protein_coding MGP_C57BL6NJ_T0088619.1 MGP_C57BL6NJ_G0033834.1 mouse_genomes_project 8 5965656 5985202 - MGP_C57BL6NJ_P0088619 Efnb2 protein_coding protein_coding MGP_C57BL6NJ_T0091317.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130098436 130139180 + MGP_C57BL6NJ_P0091317 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0091318.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130098470 130139181 + MGP_C57BL6NJ_P0091318 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0091319.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130098471 130105553 + MGP_C57BL6NJ_P0091319 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0091320.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130098475 130111572 + Zc3h18 protein_coding retained_intron MGP_C57BL6NJ_T0091321.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130098508 130139180 + MGP_C57BL6NJ_P0091321 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0091322.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130125090 130127948 + Zc3h18 protein_coding processed_transcript MGP_C57BL6NJ_T0091323.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130125160 130133224 + MGP_C57BL6NJ_P0091323 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0091324.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130129663 130139180 + Zc3h18 protein_coding retained_intron MGP_C57BL6NJ_T0091325.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130129838 130132725 + Zc3h18 protein_coding retained_intron MGP_C57BL6NJ_T0091326.1 MGP_C57BL6NJ_G0034716.1 mouse_genomes_project 8 130133145 130138069 + MGP_C57BL6NJ_P0091326 Zc3h18 protein_coding protein_coding MGP_C57BL6NJ_T0101909.1 MGP_C57BL6NJ_G0039955.1 mouse_genomes_project 8 3373792 3373936 - Gm24288 snoRNA snoRNA MGP_C57BL6NJ_T0090761.1 MGP_C57BL6NJ_G0034532.1 mouse_genomes_project 8 111520586 111525614 + MGP_C57BL6NJ_P0090761 Elmo3 protein_coding protein_coding MGP_C57BL6NJ_T0089153.1 MGP_C57BL6NJ_G0034029.1 mouse_genomes_project 8 35259555 35271747 + MGP_C57BL6NJ_P0089153 Ppp1r3b protein_coding protein_coding MGP_C57BL6NJ_T0016405.1 MGP_C57BL6NJ_G0014450.1 mouse_genomes_project 8 10769440 10770362 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016421.1 MGP_C57BL6NJ_G0014466.1 mouse_genomes_project 8 20927438 20927729 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091138.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125621797 126731779 + MGP_C57BL6NJ_P0091138 Cdh13 protein_coding protein_coding MGP_C57BL6NJ_T0091139.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125621819 126230505 + Cdh13 protein_coding retained_intron MGP_C57BL6NJ_T0091140.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125621839 126353383 + Cdh13 protein_coding retained_intron MGP_C57BL6NJ_T0091141.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125621860 126125303 + Cdh13 protein_coding retained_intron MGP_C57BL6NJ_T0091142.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125621861 126602370 + Cdh13 protein_coding retained_intron MGP_C57BL6NJ_T0091143.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 125652604 126236050 + Cdh13 protein_coding processed_transcript MGP_C57BL6NJ_T0091144.1 MGP_C57BL6NJ_G0034672.1 mouse_genomes_project 8 126681226 126720242 + Cdh13 protein_coding processed_transcript MGP_C57BL6NJ_T0091148.1 MGP_C57BL6NJ_G0034675.1 mouse_genomes_project 8 126863048 126872003 + MGP_C57BL6NJ_P0091148 Osgin1 protein_coding protein_coding MGP_C57BL6NJ_T0091149.1 MGP_C57BL6NJ_G0034675.1 mouse_genomes_project 8 126866046 126871942 + Osgin1 protein_coding processed_transcript MGP_C57BL6NJ_T0091150.1 MGP_C57BL6NJ_G0034675.1 mouse_genomes_project 8 126866091 126875182 + Osgin1 protein_coding retained_intron MGP_C57BL6NJ_T0091151.1 MGP_C57BL6NJ_G0034675.1 mouse_genomes_project 8 126866113 126873983 + Osgin1 protein_coding retained_intron MGP_C57BL6NJ_T0091152.1 MGP_C57BL6NJ_G0034675.1 mouse_genomes_project 8 126866614 126875188 + MGP_C57BL6NJ_P0091152 Osgin1 protein_coding protein_coding MGP_C57BL6NJ_T0088863.1 MGP_C57BL6NJ_G0033921.1 mouse_genomes_project 8 19547523 19843967 - MGP_C57BL6NJ_P0088863 Defa29 protein_coding protein_coding MGP_C57BL6NJ_T0089528.1 MGP_C57BL6NJ_G0034140.1 mouse_genomes_project 8 67399728 67428532 + MGP_C57BL6NJ_P0089528 Tmem192 protein_coding protein_coding MGP_C57BL6NJ_T0089529.1 MGP_C57BL6NJ_G0034140.1 mouse_genomes_project 8 67399728 67428532 + MGP_C57BL6NJ_P0089529 Tmem192 protein_coding protein_coding MGP_C57BL6NJ_T0088634.1 MGP_C57BL6NJ_G0033845.1 mouse_genomes_project 8 8867046 9005470 + MGP_C57BL6NJ_P0088634 Col4a2 protein_coding protein_coding MGP_C57BL6NJ_T0088635.1 MGP_C57BL6NJ_G0033845.1 mouse_genomes_project 8 8961082 8977423 + MGP_C57BL6NJ_P0088635 Col4a2 protein_coding protein_coding MGP_C57BL6NJ_T0088636.1 MGP_C57BL6NJ_G0033845.1 mouse_genomes_project 8 8997291 8999885 + Col4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0089554.1 MGP_C57BL6NJ_G0034149.1 mouse_genomes_project 8 69266669 69276047 + MGP_C57BL6NJ_P0089554 Npy1r protein_coding protein_coding MGP_C57BL6NJ_T0011262.1 MGP_C57BL6NJ_G0009347.1 mouse_genomes_project 8 101807243 101807334 + Gm24132 miRNA miRNA MGP_C57BL6NJ_T0089249.1 MGP_C57BL6NJ_G0034061.1 mouse_genomes_project 8 44056276 44058722 - MGP_C57BL6NJ_P0089249 protein_coding protein_coding MGP_C57BL6NJ_T0002485.1 MGP_C57BL6NJ_G0002373.1 mouse_genomes_project 8 128758823 128759501 + TEC TEC MGP_C57BL6NJ_T0009303.1 MGP_C57BL6NJ_G0007481.1 mouse_genomes_project 8 74007780 74026550 - lincRNA lincRNA MGP_C57BL6NJ_T0088538.1 MGP_C57BL6NJ_G0033811.1 mouse_genomes_project 8 742003 747635 - MGP_C57BL6NJ_P0088538 Cd209a protein_coding protein_coding MGP_C57BL6NJ_T0009271.1 MGP_C57BL6NJ_G0007454.1 mouse_genomes_project 8 25953002 25962827 - lincRNA lincRNA MGP_C57BL6NJ_T0011978.1 MGP_C57BL6NJ_G0010063.1 mouse_genomes_project 8 24708758 24709080 + Gm23094 misc_RNA misc_RNA MGP_C57BL6NJ_T0091245.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128709455 128726146 - MGP_C57BL6NJ_P0091245 Mthfsd protein_coding protein_coding MGP_C57BL6NJ_T0091246.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128712839 128719013 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091247.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715380 128726155 - MGP_C57BL6NJ_P0091247 Mthfsd protein_coding protein_coding MGP_C57BL6NJ_T0091248.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715382 128726123 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091249.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715384 128726138 - MGP_C57BL6NJ_P0091249 Mthfsd protein_coding protein_coding MGP_C57BL6NJ_T0091250.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715594 128719421 - Mthfsd protein_coding retained_intron MGP_C57BL6NJ_T0091251.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715678 128726220 - MGP_C57BL6NJ_P0091251 Mthfsd protein_coding protein_coding MGP_C57BL6NJ_T0091252.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128715764 128726207 - Mthfsd protein_coding retained_intron MGP_C57BL6NJ_T0091253.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128716535 128726116 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091254.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128716835 128723460 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091255.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128719003 128726126 - MGP_C57BL6NJ_P0091255 Mthfsd protein_coding protein_coding MGP_C57BL6NJ_T0091256.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128720550 128725471 - Mthfsd protein_coding retained_intron MGP_C57BL6NJ_T0091257.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128721679 128723517 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091258.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128721926 128726141 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0091259.1 MGP_C57BL6NJ_G0034702.1 mouse_genomes_project 8 128722302 128726171 - Mthfsd protein_coding processed_transcript MGP_C57BL6NJ_T0011987.1 MGP_C57BL6NJ_G0010072.1 mouse_genomes_project 8 92013751 92014108 + Gm24841 misc_RNA misc_RNA MGP_C57BL6NJ_T0090099.1 MGP_C57BL6NJ_G0034319.1 mouse_genomes_project 8 86321463 86399052 - MGP_C57BL6NJ_P0090099 Il15 protein_coding protein_coding MGP_C57BL6NJ_T0089460.1 MGP_C57BL6NJ_G0034124.1 mouse_genomes_project 8 62694547 62743370 + MGP_C57BL6NJ_P0089460 Aadat protein_coding protein_coding MGP_C57BL6NJ_T0089404.1 MGP_C57BL6NJ_G0034103.1 mouse_genomes_project 8 55093856 55106451 + MGP_C57BL6NJ_P0089404 Aga protein_coding protein_coding MGP_C57BL6NJ_T0090967.1 MGP_C57BL6NJ_G0034612.1 mouse_genomes_project 8 116693811 116704144 + MGP_C57BL6NJ_P0090967 Zfp612 protein_coding protein_coding MGP_C57BL6NJ_T0089861.1 MGP_C57BL6NJ_G0034240.1 mouse_genomes_project 8 74529168 74537084 + MGP_C57BL6NJ_P0089861 Babam1 protein_coding protein_coding MGP_C57BL6NJ_T0091066.1 MGP_C57BL6NJ_G0034641.1 mouse_genomes_project 8 118695116 118709105 - MGP_C57BL6NJ_P0091066 Tmem170 protein_coding protein_coding MGP_C57BL6NJ_T0089892.1 MGP_C57BL6NJ_G0034250.1 mouse_genomes_project 8 74701073 74705642 - MGP_C57BL6NJ_P0089892 Tmem221 protein_coding protein_coding MGP_C57BL6NJ_T0089655.1 MGP_C57BL6NJ_G0034182.1 mouse_genomes_project 8 72947567 72977379 + MGP_C57BL6NJ_P0089655 Sugp1 protein_coding protein_coding MGP_C57BL6NJ_T0016414.1 MGP_C57BL6NJ_G0014459.1 mouse_genomes_project 8 19245660 19246805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090674.1 MGP_C57BL6NJ_G0034495.1 mouse_genomes_project 8 110100220 110146622 + MGP_C57BL6NJ_P0090674 Cdh5 protein_coding protein_coding MGP_C57BL6NJ_T0090871.1 MGP_C57BL6NJ_G0034575.1 mouse_genomes_project 8 112587361 112673361 - MGP_C57BL6NJ_P0090871 Smpd3 protein_coding protein_coding MGP_C57BL6NJ_T0090664.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104373360 104790801 - MGP_C57BL6NJ_P0090664 Cdh8 protein_coding protein_coding MGP_C57BL6NJ_T0090665.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104373787 104790801 - MGP_C57BL6NJ_P0090665 Cdh8 protein_coding protein_coding MGP_C57BL6NJ_T0090666.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104377674 104790813 - MGP_C57BL6NJ_P0090666 Cdh8 protein_coding protein_coding MGP_C57BL6NJ_T0090667.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104377866 104790845 - MGP_C57BL6NJ_P0090667 Cdh8 protein_coding protein_coding MGP_C57BL6NJ_T0090668.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104377866 104790693 - MGP_C57BL6NJ_P0090668 Cdh8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090669.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104533084 104645950 - Cdh8 protein_coding retained_intron MGP_C57BL6NJ_T0090670.1 MGP_C57BL6NJ_G0034492.1 mouse_genomes_project 8 104587647 104790813 - MGP_C57BL6NJ_P0090670 Cdh8 protein_coding protein_coding MGP_C57BL6NJ_T0090875.1 MGP_C57BL6NJ_G0034579.1 mouse_genomes_project 8 112966327 113038535 + MGP_C57BL6NJ_P0090875 Cdh1 protein_coding protein_coding MGP_C57BL6NJ_T0090876.1 MGP_C57BL6NJ_G0034579.1 mouse_genomes_project 8 112966355 113037651 + MGP_C57BL6NJ_P0090876 Cdh1 protein_coding protein_coding MGP_C57BL6NJ_T0090877.1 MGP_C57BL6NJ_G0034579.1 mouse_genomes_project 8 112967119 113020686 + Cdh1 protein_coding processed_transcript MGP_C57BL6NJ_T0018909.1 MGP_C57BL6NJ_G0016098.1 mouse_genomes_project 8 1183495 1230163 - 4932443L11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018910.1 MGP_C57BL6NJ_G0016098.1 mouse_genomes_project 8 1199326 1229568 - 4932443L11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0103553.1 MGP_C57BL6NJ_G0041345.1 mouse_genomes_project 8 17230593 17233126 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0091225.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128220026 128235210 - MGP_C57BL6NJ_P0091225 Emc8 protein_coding protein_coding MGP_C57BL6NJ_T0091226.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128222090 128235244 - Emc8 protein_coding retained_intron MGP_C57BL6NJ_T0091227.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128223963 128235805 - MGP_C57BL6NJ_P0091227 Emc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091228.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128224136 128234995 - MGP_C57BL6NJ_P0091228 Emc8 protein_coding protein_coding MGP_C57BL6NJ_T0091229.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128224162 128235068 - MGP_C57BL6NJ_P0091229 Emc8 protein_coding protein_coding MGP_C57BL6NJ_T0091230.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128226086 128235235 - MGP_C57BL6NJ_P0091230 Emc8 protein_coding protein_coding MGP_C57BL6NJ_T0091231.1 MGP_C57BL6NJ_G0034698.1 mouse_genomes_project 8 128226759 128235345 - Emc8 protein_coding retained_intron MGP_C57BL6NJ_T0091117.1 MGP_C57BL6NJ_G0034660.1 mouse_genomes_project 8 124119108 124138333 + MGP_C57BL6NJ_P0091117 Cenpn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101918.1 MGP_C57BL6NJ_G0039964.1 mouse_genomes_project 8 16944816 16944919 + Gm22551 snoRNA snoRNA MGP_C57BL6NJ_T0089672.1 MGP_C57BL6NJ_G0034189.1 mouse_genomes_project 8 73069102 73088223 + MGP_C57BL6NJ_P0089672 protein_coding protein_coding MGP_C57BL6NJ_T0089673.1 MGP_C57BL6NJ_G0034189.1 mouse_genomes_project 8 73069102 73088223 + MGP_C57BL6NJ_P0089673 protein_coding protein_coding MGP_C57BL6NJ_T0089674.1 MGP_C57BL6NJ_G0034189.1 mouse_genomes_project 8 73069105 73088222 + MGP_C57BL6NJ_P0089674 protein_coding protein_coding MGP_C57BL6NJ_T0089675.1 MGP_C57BL6NJ_G0034189.1 mouse_genomes_project 8 73069105 73088222 + MGP_C57BL6NJ_P0089675 protein_coding protein_coding MGP_C57BL6NJ_T0005512.1 MGP_C57BL6NJ_G0004666.1 mouse_genomes_project 8 41382993 41385333 + Gm16192 antisense antisense MGP_C57BL6NJ_T0088638.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9060069 9077455 + MGP_C57BL6NJ_P0088638 Carkd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088639.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9060070 9075782 + MGP_C57BL6NJ_P0088639 Carkd protein_coding protein_coding MGP_C57BL6NJ_T0088640.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9060089 9075540 + MGP_C57BL6NJ_P0088640 Carkd protein_coding protein_coding MGP_C57BL6NJ_T0088641.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9060095 9069565 + Carkd protein_coding retained_intron MGP_C57BL6NJ_T0088642.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9060135 9072731 + Carkd protein_coding retained_intron MGP_C57BL6NJ_T0088643.1 MGP_C57BL6NJ_G0033847.1 mouse_genomes_project 8 9072456 9075762 + Carkd protein_coding retained_intron MGP_C57BL6NJ_T0091493.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132662134 132712619 - MGP_C57BL6NJ_P0091493 Ttc13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091494.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132662144 132712640 - MGP_C57BL6NJ_P0091494 Ttc13 protein_coding protein_coding MGP_C57BL6NJ_T0091495.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132662144 132712621 - MGP_C57BL6NJ_P0091495 Ttc13 protein_coding protein_coding MGP_C57BL6NJ_T0091496.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132662144 132712629 - MGP_C57BL6NJ_P0091496 Ttc13 protein_coding protein_coding MGP_C57BL6NJ_T0091497.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132664257 132665030 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0091498.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132664763 132666312 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0091499.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132664909 132669760 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0091500.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132669846 132673342 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0091501.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132670352 132672934 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0091502.1 MGP_C57BL6NJ_G0034768.1 mouse_genomes_project 8 132699149 132712638 - Ttc13 protein_coding retained_intron MGP_C57BL6NJ_T0088530.1 MGP_C57BL6NJ_G0033806.1 mouse_genomes_project 8 648343 652809 + MGP_C57BL6NJ_P0088530 Retn protein_coding protein_coding MGP_C57BL6NJ_T0088531.1 MGP_C57BL6NJ_G0033806.1 mouse_genomes_project 8 648343 650670 + MGP_C57BL6NJ_P0088531 Retn protein_coding protein_coding MGP_C57BL6NJ_T0089511.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65279606 65724579 + MGP_C57BL6NJ_P0089511 Spock3 protein_coding protein_coding MGP_C57BL6NJ_T0089512.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65279829 65724587 + MGP_C57BL6NJ_P0089512 Spock3 protein_coding protein_coding MGP_C57BL6NJ_T0089513.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65279958 65503081 + Spock3 protein_coding retained_intron MGP_C57BL6NJ_T0089514.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65279958 65724830 + MGP_C57BL6NJ_P0089514 Spock3 protein_coding protein_coding MGP_C57BL6NJ_T0089515.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65280397 65724821 + MGP_C57BL6NJ_P0089515 Spock3 protein_coding protein_coding MGP_C57BL6NJ_T0089516.1 MGP_C57BL6NJ_G0034134.1 mouse_genomes_project 8 65280522 65297169 + Spock3 protein_coding processed_transcript MGP_C57BL6NJ_T0089689.1 MGP_C57BL6NJ_G0034191.1 mouse_genomes_project 8 73106559 73137109 - Slc25a42 protein_coding retained_intron MGP_C57BL6NJ_T0089690.1 MGP_C57BL6NJ_G0034191.1 mouse_genomes_project 8 73106559 73137109 - MGP_C57BL6NJ_P0089690 Slc25a42 protein_coding protein_coding MGP_C57BL6NJ_T0089691.1 MGP_C57BL6NJ_G0034191.1 mouse_genomes_project 8 73106559 73137060 - MGP_C57BL6NJ_P0089691 Slc25a42 protein_coding protein_coding MGP_C57BL6NJ_T0089692.1 MGP_C57BL6NJ_G0034191.1 mouse_genomes_project 8 73111707 73137109 - Slc25a42 protein_coding retained_intron MGP_C57BL6NJ_T0089693.1 MGP_C57BL6NJ_G0034191.1 mouse_genomes_project 8 73116360 73137109 - Slc25a42 protein_coding retained_intron MGP_C57BL6NJ_T0090216.1 MGP_C57BL6NJ_G0034360.1 mouse_genomes_project 8 88855109 88856631 - MGP_C57BL6NJ_P0090216 Ier2 protein_coding protein_coding MGP_C57BL6NJ_T0009286.1 MGP_C57BL6NJ_G0007465.1 mouse_genomes_project 8 34140443 34165202 + lincRNA lincRNA MGP_C57BL6NJ_T0101954.1 MGP_C57BL6NJ_G0040000.1 mouse_genomes_project 8 94218099 94218231 - Gm24212 snoRNA snoRNA MGP_C57BL6NJ_T0088776.1 MGP_C57BL6NJ_G0033885.1 mouse_genomes_project 8 11701851 11723975 - MGP_C57BL6NJ_P0088776 Tdrp protein_coding protein_coding MGP_C57BL6NJ_T0088777.1 MGP_C57BL6NJ_G0033885.1 mouse_genomes_project 8 11701972 11703230 - Tdrp protein_coding processed_transcript MGP_C57BL6NJ_T0088778.1 MGP_C57BL6NJ_G0033885.1 mouse_genomes_project 8 11703598 11711652 - Tdrp protein_coding processed_transcript MGP_C57BL6NJ_T0088779.1 MGP_C57BL6NJ_G0033885.1 mouse_genomes_project 8 11703955 11724230 - MGP_C57BL6NJ_P0088779 Tdrp protein_coding protein_coding MGP_C57BL6NJ_T0088780.1 MGP_C57BL6NJ_G0033885.1 mouse_genomes_project 8 11721813 11723941 - Tdrp protein_coding retained_intron MGP_C57BL6NJ_T0009259.1 MGP_C57BL6NJ_G0007445.1 mouse_genomes_project 8 9036218 9038531 + E230013L22Rik lincRNA lincRNA MGP_C57BL6NJ_T0002484.1 MGP_C57BL6NJ_G0002372.1 mouse_genomes_project 8 128257014 128257881 + TEC TEC MGP_C57BL6NJ_T0005561.1 MGP_C57BL6NJ_G0004709.1 mouse_genomes_project 8 129610846 129612838 + BC048644 antisense antisense MGP_C57BL6NJ_T0005562.1 MGP_C57BL6NJ_G0004709.1 mouse_genomes_project 8 129610846 129621243 + BC048644 antisense antisense MGP_C57BL6NJ_T0016435.1 MGP_C57BL6NJ_G0014480.1 mouse_genomes_project 8 42464421 42466071 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002470.1 MGP_C57BL6NJ_G0002359.1 mouse_genomes_project 8 12827001 12831098 - TEC TEC MGP_C57BL6NJ_T0090711.1 MGP_C57BL6NJ_G0034512.1 mouse_genomes_project 8 110819032 110825923 + MGP_C57BL6NJ_P0090711 Ces2a protein_coding protein_coding MGP_C57BL6NJ_T0090712.1 MGP_C57BL6NJ_G0034512.1 mouse_genomes_project 8 110819047 110825927 + MGP_C57BL6NJ_P0090712 Ces2a protein_coding protein_coding MGP_C57BL6NJ_T0090713.1 MGP_C57BL6NJ_G0034512.1 mouse_genomes_project 8 110819057 110822430 + Ces2a protein_coding processed_transcript MGP_C57BL6NJ_T0090078.1 MGP_C57BL6NJ_G0034314.1 mouse_genomes_project 8 84465824 84561304 + MGP_C57BL6NJ_P0090078 Frem3 protein_coding protein_coding MGP_C57BL6NJ_T0005555.1 MGP_C57BL6NJ_G0004703.1 mouse_genomes_project 8 121703923 121713491 - Gm16118 antisense antisense MGP_C57BL6NJ_T0005565.1 MGP_C57BL6NJ_G0004712.1 mouse_genomes_project 8 131752706 131754939 - 2810455O05Rik antisense antisense MGP_C57BL6NJ_T0011239.1 MGP_C57BL6NJ_G0009324.1 mouse_genomes_project 8 88021391 88021534 - Gm44330 miRNA miRNA MGP_C57BL6NJ_T0091171.1 MGP_C57BL6NJ_G0034683.1 mouse_genomes_project 8 127073064 127084557 - MGP_C57BL6NJ_P0091171 Kcng4 protein_coding protein_coding MGP_C57BL6NJ_T0091172.1 MGP_C57BL6NJ_G0034683.1 mouse_genomes_project 8 127073064 127084891 - MGP_C57BL6NJ_P0091172 Kcng4 protein_coding protein_coding MGP_C57BL6NJ_T0016424.1 MGP_C57BL6NJ_G0014469.1 mouse_genomes_project 8 30699206 30699672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101920.1 MGP_C57BL6NJ_G0039966.1 mouse_genomes_project 8 23583059 23583183 + Gm26208 snoRNA snoRNA MGP_C57BL6NJ_T0089124.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33485950 33639438 - MGP_C57BL6NJ_P0089124 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089125.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33485951 33639416 - MGP_C57BL6NJ_P0089125 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089126.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33485954 33639381 - MGP_C57BL6NJ_P0089126 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089127.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487088 33639391 - MGP_C57BL6NJ_P0089127 Rbpms protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089128.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487359 33549978 - MGP_C57BL6NJ_P0089128 Rbpms protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089129.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487368 33510949 - MGP_C57BL6NJ_P0089129 Rbpms protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089130.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487371 33510912 - MGP_C57BL6NJ_P0089130 Rbpms protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089131.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487373 33560081 - Rbpms protein_coding processed_transcript MGP_C57BL6NJ_T0089132.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33487379 33501341 - Rbpms protein_coding retained_intron MGP_C57BL6NJ_T0089133.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33508051 33639380 - MGP_C57BL6NJ_P0089133 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089134.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33510854 33548759 - MGP_C57BL6NJ_P0089134 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089135.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33510876 33597349 - MGP_C57BL6NJ_P0089135 Rbpms protein_coding protein_coding MGP_C57BL6NJ_T0089136.1 MGP_C57BL6NJ_G0034021.1 mouse_genomes_project 8 33570542 33599331 - Rbpms protein_coding processed_transcript MGP_C57BL6NJ_T0100675.1 MGP_C57BL6NJ_G0038721.1 mouse_genomes_project 8 118915004 118915111 + Gm22827 snRNA snRNA MGP_C57BL6NJ_T0091407.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091194 131103061 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091408.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091194 131103015 - MGP_C57BL6NJ_P0091408 Vps9d1 protein_coding protein_coding MGP_C57BL6NJ_T0091409.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091194 131103187 - MGP_C57BL6NJ_P0091409 Vps9d1 protein_coding protein_coding MGP_C57BL6NJ_T0091410.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091196 131103002 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091411.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091196 131102948 - MGP_C57BL6NJ_P0091411 Vps9d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091412.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131091197 131102931 - MGP_C57BL6NJ_P0091412 Vps9d1 protein_coding protein_coding MGP_C57BL6NJ_T0091413.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131093785 131102944 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091414.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131093981 131095769 - Vps9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0091415.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131095354 131096835 - Vps9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0091416.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131095695 131096852 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091417.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131097391 131097822 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091418.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131097666 131099910 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0091419.1 MGP_C57BL6NJ_G0034742.1 mouse_genomes_project 8 131098550 131102889 - Vps9d1 protein_coding retained_intron MGP_C57BL6NJ_T0090115.1 MGP_C57BL6NJ_G0034327.1 mouse_genomes_project 8 87442177 87483061 + MGP_C57BL6NJ_P0090115 Clgn protein_coding protein_coding MGP_C57BL6NJ_T0090116.1 MGP_C57BL6NJ_G0034327.1 mouse_genomes_project 8 87442188 87481340 + MGP_C57BL6NJ_P0090116 Clgn protein_coding protein_coding MGP_C57BL6NJ_T0088532.1 MGP_C57BL6NJ_G0033807.1 mouse_genomes_project 8 658470 661614 + MGP_C57BL6NJ_P0088532 Mcemp1 protein_coding protein_coding MGP_C57BL6NJ_T0098909.1 MGP_C57BL6NJ_G0036973.1 mouse_genomes_project 8 131777350 131778353 + pseudogene pseudogene MGP_C57BL6NJ_T0088875.1 MGP_C57BL6NJ_G0033933.1 mouse_genomes_project 8 20653224 20657467 + MGP_C57BL6NJ_P0088875 Ccdc70 protein_coding protein_coding MGP_C57BL6NJ_T0088876.1 MGP_C57BL6NJ_G0033933.1 mouse_genomes_project 8 20654045 20657491 + MGP_C57BL6NJ_P0088876 Ccdc70 protein_coding protein_coding MGP_C57BL6NJ_T0089382.1 MGP_C57BL6NJ_G0034095.1 mouse_genomes_project 8 48649339 48660501 - MGP_C57BL6NJ_P0089382 Cdkn2aip protein_coding protein_coding MGP_C57BL6NJ_T0103555.1 MGP_C57BL6NJ_G0041347.1 mouse_genomes_project 8 17448059 17448998 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0089666.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73046324 73061225 + MGP_C57BL6NJ_P0089666 protein_coding protein_coding MGP_C57BL6NJ_T0089667.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73046532 73059504 + protein_coding retained_intron MGP_C57BL6NJ_T0089668.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73046536 73088223 + MGP_C57BL6NJ_P0089668 protein_coding protein_coding MGP_C57BL6NJ_T0089669.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73046538 73059518 + MGP_C57BL6NJ_P0089669 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089670.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73046548 73061230 + MGP_C57BL6NJ_P0089670 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089671.1 MGP_C57BL6NJ_G0034188.1 mouse_genomes_project 8 73047102 73061288 + MGP_C57BL6NJ_P0089671 protein_coding protein_coding MGP_C57BL6NJ_T0016463.1 MGP_C57BL6NJ_G0014508.1 mouse_genomes_project 8 89059556 89059940 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090968.1 MGP_C57BL6NJ_G0034613.1 mouse_genomes_project 8 116696849 116718586 - MGP_C57BL6NJ_P0090968 Gm17720 protein_coding protein_coding MGP_C57BL6NJ_T0090003.1 MGP_C57BL6NJ_G0034288.1 mouse_genomes_project 8 78237963 78261732 + MGP_C57BL6NJ_P0090003 Isx protein_coding protein_coding MGP_C57BL6NJ_T0090004.1 MGP_C57BL6NJ_G0034288.1 mouse_genomes_project 8 78238330 78261373 + MGP_C57BL6NJ_P0090004 Isx protein_coding protein_coding MGP_C57BL6NJ_T0016401.1 MGP_C57BL6NJ_G0014446.1 mouse_genomes_project 8 1870953 1871349 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089387.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49131445 49176875 + MGP_C57BL6NJ_P0089387 Dctd protein_coding protein_coding MGP_C57BL6NJ_T0089388.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142309 49177931 + MGP_C57BL6NJ_P0089388 Dctd protein_coding protein_coding MGP_C57BL6NJ_T0089389.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142364 49177929 + MGP_C57BL6NJ_P0089389 Dctd protein_coding protein_coding MGP_C57BL6NJ_T0089390.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142513 49177929 + MGP_C57BL6NJ_P0089390 Dctd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089391.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142516 49173957 + Dctd protein_coding retained_intron MGP_C57BL6NJ_T0089392.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142540 49174857 + Dctd protein_coding processed_transcript MGP_C57BL6NJ_T0089393.1 MGP_C57BL6NJ_G0034100.1 mouse_genomes_project 8 49142562 49190899 + MGP_C57BL6NJ_P0089393 Dctd protein_coding protein_coding MGP_C57BL6NJ_T0090638.1 MGP_C57BL6NJ_G0034484.1 mouse_genomes_project 8 100570534 100596742 + MGP_C57BL6NJ_P0090638 Ccdc113 protein_coding protein_coding MGP_C57BL6NJ_T0089021.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752956 24757783 + MGP_C57BL6NJ_P0089021 Plpp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089022.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752956 24757783 + MGP_C57BL6NJ_P0089022 Plpp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089023.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752959 24757783 + Plpp5 protein_coding retained_intron MGP_C57BL6NJ_T0089024.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752959 24757783 + MGP_C57BL6NJ_P0089024 Plpp5 protein_coding protein_coding MGP_C57BL6NJ_T0089025.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752959 24757783 + MGP_C57BL6NJ_P0089025 Plpp5 protein_coding protein_coding MGP_C57BL6NJ_T0089026.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24752995 24755047 + Plpp5 protein_coding retained_intron MGP_C57BL6NJ_T0089027.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24753277 24757779 + Plpp5 protein_coding retained_intron MGP_C57BL6NJ_T0089028.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24753351 24757783 + Plpp5 protein_coding processed_transcript MGP_C57BL6NJ_T0089029.1 MGP_C57BL6NJ_G0033976.1 mouse_genomes_project 8 24755853 24757344 + Plpp5 protein_coding retained_intron MGP_C57BL6NJ_T0088850.1 MGP_C57BL6NJ_G0033910.1 mouse_genomes_project 8 17214799 17217929 + MGP_C57BL6NJ_P0088850 Defb4 protein_coding protein_coding MGP_C57BL6NJ_T0088663.1 MGP_C57BL6NJ_G0033855.1 mouse_genomes_project 8 10039027 10043859 + MGP_C57BL6NJ_P0088663 Sox1 protein_coding protein_coding MGP_C57BL6NJ_T0090671.1 MGP_C57BL6NJ_G0034493.1 mouse_genomes_project 8 106211315 106214824 + MGP_C57BL6NJ_P0090671 protein_coding protein_coding MGP_C57BL6NJ_T0088943.1 MGP_C57BL6NJ_G0033955.1 mouse_genomes_project 8 21935604 21976726 - MGP_C57BL6NJ_P0088943 Gpat4 protein_coding protein_coding MGP_C57BL6NJ_T0100667.1 MGP_C57BL6NJ_G0038713.1 mouse_genomes_project 8 103978374 103978500 - Gm23494 snRNA snRNA MGP_C57BL6NJ_T0091174.1 MGP_C57BL6NJ_G0034685.1 mouse_genomes_project 8 127164010 127221894 + MGP_C57BL6NJ_P0091174 Atp2c2 protein_coding protein_coding MGP_C57BL6NJ_T0016416.1 MGP_C57BL6NJ_G0014461.1 mouse_genomes_project 8 19261927 19263050 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016473.1 MGP_C57BL6NJ_G0014518.1 mouse_genomes_project 8 105588958 105589459 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090768.1 MGP_C57BL6NJ_G0034535.1 mouse_genomes_project 8 111548093 111566828 - Fhod1 protein_coding retained_intron MGP_C57BL6NJ_T0090769.1 MGP_C57BL6NJ_G0034535.1 mouse_genomes_project 8 111548093 111566872 - MGP_C57BL6NJ_P0090769 Fhod1 protein_coding protein_coding MGP_C57BL6NJ_T0090770.1 MGP_C57BL6NJ_G0034535.1 mouse_genomes_project 8 111549870 111550497 - Fhod1 protein_coding retained_intron MGP_C57BL6NJ_T0090771.1 MGP_C57BL6NJ_G0034535.1 mouse_genomes_project 8 111555471 111556826 - Fhod1 protein_coding retained_intron MGP_C57BL6NJ_T0009367.1 MGP_C57BL6NJ_G0007525.1 mouse_genomes_project 8 115590885 115783059 + D030068K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0009368.1 MGP_C57BL6NJ_G0007525.1 mouse_genomes_project 8 115590886 115758010 + D030068K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0009369.1 MGP_C57BL6NJ_G0007525.1 mouse_genomes_project 8 115778384 115811206 + D030068K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0090409.1 MGP_C57BL6NJ_G0034409.1 mouse_genomes_project 8 91932980 91963560 + MGP_C57BL6NJ_P0090409 4933402J07Rik protein_coding protein_coding MGP_C57BL6NJ_T0090611.1 MGP_C57BL6NJ_G0034473.1 mouse_genomes_project 8 99983654 100012228 + MGP_C57BL6NJ_P0090611 Adgrg3 protein_coding protein_coding MGP_C57BL6NJ_T0090517.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98680759 98826049 + MGP_C57BL6NJ_P0090517 Gnao1 protein_coding protein_coding MGP_C57BL6NJ_T0090518.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98683143 98684217 + Gnao1 protein_coding retained_intron MGP_C57BL6NJ_T0090519.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98683287 98844837 + MGP_C57BL6NJ_P0090519 Gnao1 protein_coding protein_coding MGP_C57BL6NJ_T0090520.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98683289 98844405 + MGP_C57BL6NJ_P0090520 Gnao1 protein_coding protein_coding MGP_C57BL6NJ_T0090521.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98683762 98833138 + Gnao1 protein_coding processed_transcript MGP_C57BL6NJ_T0090522.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98683785 98836078 + MGP_C57BL6NJ_P0090522 Gnao1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090523.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98769119 98843612 + MGP_C57BL6NJ_P0090523 Gnao1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090524.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98825150 98826321 + Gnao1 protein_coding retained_intron MGP_C57BL6NJ_T0090525.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98826050 98843530 + MGP_C57BL6NJ_P0090525 Gnao1 protein_coding protein_coding MGP_C57BL6NJ_T0090526.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98826050 98843509 + MGP_C57BL6NJ_P0090526 Gnao1 protein_coding protein_coding MGP_C57BL6NJ_T0090527.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98828587 98832221 + Gnao1 protein_coding processed_transcript MGP_C57BL6NJ_T0090528.1 MGP_C57BL6NJ_G0034445.1 mouse_genomes_project 8 98838292 98842470 + Gnao1 protein_coding retained_intron MGP_C57BL6NJ_T0091392.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130975896 130990996 - MGP_C57BL6NJ_P0091392 Sult5a1 protein_coding protein_coding MGP_C57BL6NJ_T0091393.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130975898 130990996 - MGP_C57BL6NJ_P0091393 Sult5a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091394.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130978449 130990983 - MGP_C57BL6NJ_P0091394 Sult5a1 protein_coding protein_coding MGP_C57BL6NJ_T0091395.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130981109 130990954 - MGP_C57BL6NJ_P0091395 Sult5a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091396.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130989729 130991000 - Sult5a1 protein_coding retained_intron MGP_C57BL6NJ_T0091397.1 MGP_C57BL6NJ_G0034736.1 mouse_genomes_project 8 130989996 130991041 - Sult5a1 protein_coding retained_intron MGP_C57BL6NJ_T0016462.1 MGP_C57BL6NJ_G0014507.1 mouse_genomes_project 8 87403572 87404050 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089896.1 MGP_C57BL6NJ_G0034253.1 mouse_genomes_project 8 74743220 74747309 + MGP_C57BL6NJ_P0089896 Pgls protein_coding protein_coding MGP_C57BL6NJ_T0089897.1 MGP_C57BL6NJ_G0034253.1 mouse_genomes_project 8 74743228 74752129 + MGP_C57BL6NJ_P0089897 Pgls protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089898.1 MGP_C57BL6NJ_G0034253.1 mouse_genomes_project 8 74743255 74746705 + Pgls protein_coding retained_intron MGP_C57BL6NJ_T0089899.1 MGP_C57BL6NJ_G0034253.1 mouse_genomes_project 8 74743281 74746151 + MGP_C57BL6NJ_P0089899 Pgls protein_coding protein_coding MGP_C57BL6NJ_T0089900.1 MGP_C57BL6NJ_G0034253.1 mouse_genomes_project 8 74743335 74747309 + MGP_C57BL6NJ_P0089900 Pgls protein_coding protein_coding MGP_C57BL6NJ_T0090812.1 MGP_C57BL6NJ_G0034552.1 mouse_genomes_project 8 111984558 112032485 - MGP_C57BL6NJ_P0090812 Gfod2 protein_coding protein_coding MGP_C57BL6NJ_T0090813.1 MGP_C57BL6NJ_G0034552.1 mouse_genomes_project 8 111988121 112032451 - MGP_C57BL6NJ_P0090813 Gfod2 protein_coding protein_coding MGP_C57BL6NJ_T0090814.1 MGP_C57BL6NJ_G0034552.1 mouse_genomes_project 8 111997783 112032417 - Gfod2 protein_coding processed_transcript MGP_C57BL6NJ_T0005519.1 MGP_C57BL6NJ_G0004673.1 mouse_genomes_project 8 59223577 59226824 - Gm28063 antisense antisense MGP_C57BL6NJ_T0005520.1 MGP_C57BL6NJ_G0004673.1 mouse_genomes_project 8 59223595 59226824 - Gm28063 antisense antisense MGP_C57BL6NJ_T0089969.1 MGP_C57BL6NJ_G0034273.1 mouse_genomes_project 8 75453069 75457103 + MGP_C57BL6NJ_P0089969 Fam32a protein_coding protein_coding MGP_C57BL6NJ_T0089650.1 MGP_C57BL6NJ_G0034179.1 mouse_genomes_project 8 72799289 72800624 + MGP_C57BL6NJ_P0089650 Tssk6 protein_coding protein_coding MGP_C57BL6NJ_T0009263.1 MGP_C57BL6NJ_G0007449.1 mouse_genomes_project 8 10901621 10910417 + 2810030D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0009264.1 MGP_C57BL6NJ_G0007449.1 mouse_genomes_project 8 10901629 10910429 + 2810030D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0009265.1 MGP_C57BL6NJ_G0007449.1 mouse_genomes_project 8 10901653 10902692 + 2810030D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0009266.1 MGP_C57BL6NJ_G0007449.1 mouse_genomes_project 8 10901721 10910422 + 2810030D12Rik lincRNA lincRNA MGP_C57BL6NJ_T0099160.1 MGP_C57BL6NJ_G0037224.1 mouse_genomes_project 8 6984922 6985040 - n-R5s95 rRNA rRNA MGP_C57BL6NJ_T0090637.1 MGP_C57BL6NJ_G0034483.1 mouse_genomes_project 8 100461857 100506529 - MGP_C57BL6NJ_P0090637 Csnk2a2 protein_coding protein_coding MGP_C57BL6NJ_T0090937.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116160816 116177599 - MGP_C57BL6NJ_P0090937 Dhodh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090938.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116162720 116163525 - Dhodh protein_coding processed_transcript MGP_C57BL6NJ_T0090939.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116162946 116179739 - MGP_C57BL6NJ_P0090939 Dhodh protein_coding protein_coding MGP_C57BL6NJ_T0090940.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116162950 116179990 - MGP_C57BL6NJ_P0090940 Dhodh protein_coding protein_coding MGP_C57BL6NJ_T0090941.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116163374 116165756 - Dhodh protein_coding retained_intron MGP_C57BL6NJ_T0090942.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116163446 116164424 - Dhodh protein_coding retained_intron MGP_C57BL6NJ_T0090943.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116163519 116170946 - Dhodh protein_coding retained_intron MGP_C57BL6NJ_T0090944.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116165503 116179733 - MGP_C57BL6NJ_P0090944 Dhodh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090945.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116170751 116179787 - Dhodh protein_coding retained_intron MGP_C57BL6NJ_T0090946.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116170765 116179787 - Dhodh protein_coding retained_intron MGP_C57BL6NJ_T0090947.1 MGP_C57BL6NJ_G0034602.1 mouse_genomes_project 8 116172737 116180040 - MGP_C57BL6NJ_P0090947 Dhodh protein_coding protein_coding MGP_C57BL6NJ_T0011206.1 MGP_C57BL6NJ_G0009291.1 mouse_genomes_project 8 10332372 10332476 + Gm26483 miRNA miRNA MGP_C57BL6NJ_T0090572.1 MGP_C57BL6NJ_G0034461.1 mouse_genomes_project 8 99598786 99607375 + MGP_C57BL6NJ_P0090572 Arl2bp protein_coding protein_coding MGP_C57BL6NJ_T0090573.1 MGP_C57BL6NJ_G0034461.1 mouse_genomes_project 8 99599257 99607375 + MGP_C57BL6NJ_P0090573 Arl2bp protein_coding protein_coding MGP_C57BL6NJ_T0090919.1 MGP_C57BL6NJ_G0034593.1 mouse_genomes_project 8 113828428 113843415 - MGP_C57BL6NJ_P0090919 Nqo1 protein_coding protein_coding MGP_C57BL6NJ_T0090609.1 MGP_C57BL6NJ_G0034472.1 mouse_genomes_project 8 99942471 99980171 + MGP_C57BL6NJ_P0090609 Adgrg1 protein_coding protein_coding MGP_C57BL6NJ_T0090610.1 MGP_C57BL6NJ_G0034472.1 mouse_genomes_project 8 99949773 99980171 + MGP_C57BL6NJ_P0090610 Adgrg1 protein_coding protein_coding MGP_C57BL6NJ_T0090534.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98920173 98950887 + MGP_C57BL6NJ_P0090534 Ogfod1 protein_coding protein_coding MGP_C57BL6NJ_T0090535.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98920195 98922388 + Ogfod1 protein_coding retained_intron MGP_C57BL6NJ_T0090536.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98920198 98940762 + Ogfod1 protein_coding processed_transcript MGP_C57BL6NJ_T0090537.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98920224 98950893 + MGP_C57BL6NJ_P0090537 Ogfod1 protein_coding protein_coding MGP_C57BL6NJ_T0090538.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98920231 98939094 + Ogfod1 protein_coding processed_transcript MGP_C57BL6NJ_T0090539.1 MGP_C57BL6NJ_G0034448.1 mouse_genomes_project 8 98938041 98940763 + Ogfod1 protein_coding retained_intron MGP_C57BL6NJ_T0098900.1 MGP_C57BL6NJ_G0036964.1 mouse_genomes_project 8 78782610 78783847 + pseudogene pseudogene MGP_C57BL6NJ_T0101956.1 MGP_C57BL6NJ_G0040002.1 mouse_genomes_project 8 100818222 100818358 - Gm26493 snoRNA snoRNA MGP_C57BL6NJ_T0090890.1 MGP_C57BL6NJ_G0034587.1 mouse_genomes_project 8 113453028 113463396 - MGP_C57BL6NJ_P0090890 Cog8 protein_coding protein_coding MGP_C57BL6NJ_T0090891.1 MGP_C57BL6NJ_G0034587.1 mouse_genomes_project 8 113453034 113463391 - MGP_C57BL6NJ_P0090891 Cog8 protein_coding protein_coding MGP_C57BL6NJ_T0090893.1 MGP_C57BL6NJ_G0034587.1 mouse_genomes_project 8 113459384 113460964 - Cog8 protein_coding retained_intron MGP_C57BL6NJ_T0090894.1 MGP_C57BL6NJ_G0034587.1 mouse_genomes_project 8 113459614 113463205 - MGP_C57BL6NJ_P0090894 Cog8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011988.1 MGP_C57BL6NJ_G0010073.1 mouse_genomes_project 8 95837604 95837869 - Gm23408 misc_RNA misc_RNA MGP_C57BL6NJ_T0100643.1 MGP_C57BL6NJ_G0038689.1 mouse_genomes_project 8 47072051 47072148 + Gm24669 snRNA snRNA MGP_C57BL6NJ_T0005503.1 MGP_C57BL6NJ_G0004660.1 mouse_genomes_project 8 21415031 21424413 + Gm15346 antisense antisense MGP_C57BL6NJ_T0088985.1 MGP_C57BL6NJ_G0033970.1 mouse_genomes_project 8 23968577 23984499 - MGP_C57BL6NJ_P0088985 Htra4 protein_coding protein_coding MGP_C57BL6NJ_T0088986.1 MGP_C57BL6NJ_G0033970.1 mouse_genomes_project 8 23972780 23982867 - Htra4 protein_coding retained_intron MGP_C57BL6NJ_T0005542.1 MGP_C57BL6NJ_G0004692.1 mouse_genomes_project 8 111818735 111821097 + antisense antisense MGP_C57BL6NJ_T0005543.1 MGP_C57BL6NJ_G0004692.1 mouse_genomes_project 8 111818762 111838576 + antisense antisense MGP_C57BL6NJ_T0091068.1 MGP_C57BL6NJ_G0034643.1 mouse_genomes_project 8 118750775 118774517 - MGP_C57BL6NJ_P0091068 Tmem231 protein_coding protein_coding MGP_C57BL6NJ_T0088675.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10434013 10545733 + MGP_C57BL6NJ_P0088675 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088676.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10434015 10545733 + MGP_C57BL6NJ_P0088676 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088677.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10434068 10536725 + MGP_C57BL6NJ_P0088677 Atp11a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088678.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10487692 10490630 + Atp11a protein_coding retained_intron MGP_C57BL6NJ_T0088679.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10498646 10504784 + Atp11a protein_coding retained_intron MGP_C57BL6NJ_T0088680.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10511410 10545672 + MGP_C57BL6NJ_P0088680 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088681.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10524100 10534275 + MGP_C57BL6NJ_P0088681 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088682.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10526086 10527970 + Atp11a protein_coding processed_transcript MGP_C57BL6NJ_T0088683.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10533964 10539210 + MGP_C57BL6NJ_P0088683 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088684.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10534966 10539207 + MGP_C57BL6NJ_P0088684 Atp11a protein_coding protein_coding MGP_C57BL6NJ_T0088685.1 MGP_C57BL6NJ_G0033859.1 mouse_genomes_project 8 10538569 10542575 + Atp11a protein_coding retained_intron MGP_C57BL6NJ_T0091528.1 MGP_C57BL6NJ_G0034780.1 mouse_genomes_project 8 133758456 133761998 + MGP_C57BL6NJ_P0091528 Map10 protein_coding protein_coding MGP_C57BL6NJ_T0101938.1 MGP_C57BL6NJ_G0039984.1 mouse_genomes_project 8 65451058 65452213 - Gm24236 snoRNA snoRNA MGP_C57BL6NJ_T0088664.1 MGP_C57BL6NJ_G0033856.1 mouse_genomes_project 8 10209781 10230499 - MGP_C57BL6NJ_P0088664 protein_coding protein_coding MGP_C57BL6NJ_T0090930.1 MGP_C57BL6NJ_G0034597.1 mouse_genomes_project 8 115200843 115302227 + MGP_C57BL6NJ_P0090930 protein_coding protein_coding MGP_C57BL6NJ_T0090931.1 MGP_C57BL6NJ_G0034597.1 mouse_genomes_project 8 115212211 115468773 + MGP_C57BL6NJ_P0090931 protein_coding protein_coding MGP_C57BL6NJ_T0090426.1 MGP_C57BL6NJ_G0034413.1 mouse_genomes_project 8 92632282 92696517 + MGP_C57BL6NJ_P0090426 Papd5 protein_coding protein_coding MGP_C57BL6NJ_T0090427.1 MGP_C57BL6NJ_G0034413.1 mouse_genomes_project 8 92632282 92696523 + MGP_C57BL6NJ_P0090427 Papd5 protein_coding protein_coding MGP_C57BL6NJ_T0090428.1 MGP_C57BL6NJ_G0034413.1 mouse_genomes_project 8 92632283 92696523 + MGP_C57BL6NJ_P0090428 Papd5 protein_coding protein_coding MGP_C57BL6NJ_T0090429.1 MGP_C57BL6NJ_G0034413.1 mouse_genomes_project 8 92682362 92686218 + Papd5 protein_coding retained_intron MGP_C57BL6NJ_T0090430.1 MGP_C57BL6NJ_G0034413.1 mouse_genomes_project 8 92689046 92694486 + MGP_C57BL6NJ_P0090430 Papd5 protein_coding protein_coding MGP_C57BL6NJ_T0009376.1 MGP_C57BL6NJ_G0007532.1 mouse_genomes_project 8 128210126 128219800 + Gm26537 lincRNA lincRNA MGP_C57BL6NJ_T0009267.1 MGP_C57BL6NJ_G0007450.1 mouse_genomes_project 8 18375148 18900284 - lincRNA lincRNA MGP_C57BL6NJ_T0100669.1 MGP_C57BL6NJ_G0038715.1 mouse_genomes_project 8 108272115 108272178 + Gm24602 snRNA snRNA MGP_C57BL6NJ_T0009361.1 MGP_C57BL6NJ_G0007520.1 mouse_genomes_project 8 111355333 111363798 + Gm3830 lincRNA lincRNA MGP_C57BL6NJ_T0016443.1 MGP_C57BL6NJ_G0014488.1 mouse_genomes_project 8 69159900 69160197 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089921.1 MGP_C57BL6NJ_G0034258.1 mouse_genomes_project 8 74846564 74847926 + MGP_C57BL6NJ_P0089921 Insl3 protein_coding protein_coding MGP_C57BL6NJ_T0090728.1 MGP_C57BL6NJ_G0034521.1 mouse_genomes_project 8 111314799 111340952 + MGP_C57BL6NJ_P0090728 Ces4a protein_coding protein_coding MGP_C57BL6NJ_T0090012.1 MGP_C57BL6NJ_G0034290.1 mouse_genomes_project 8 78409441 78446947 + MGP_C57BL6NJ_P0090012 Tom1 protein_coding protein_coding MGP_C57BL6NJ_T0090013.1 MGP_C57BL6NJ_G0034290.1 mouse_genomes_project 8 78409441 78446947 + MGP_C57BL6NJ_P0090013 Tom1 protein_coding protein_coding MGP_C57BL6NJ_T0088812.1 MGP_C57BL6NJ_G0033894.1 mouse_genomes_project 8 12870039 12942259 + MGP_C57BL6NJ_P0088812 Myom2 protein_coding protein_coding MGP_C57BL6NJ_T0088813.1 MGP_C57BL6NJ_G0033894.1 mouse_genomes_project 8 12872403 12877392 + Myom2 protein_coding processed_transcript MGP_C57BL6NJ_T0088814.1 MGP_C57BL6NJ_G0033894.1 mouse_genomes_project 8 12873618 12888646 + Myom2 protein_coding retained_intron MGP_C57BL6NJ_T0088815.1 MGP_C57BL6NJ_G0033894.1 mouse_genomes_project 8 12914936 12917440 + Myom2 protein_coding retained_intron MGP_C57BL6NJ_T0088816.1 MGP_C57BL6NJ_G0033894.1 mouse_genomes_project 8 12927414 12939878 + Myom2 protein_coding processed_transcript MGP_C57BL6NJ_T0009338.1 MGP_C57BL6NJ_G0007507.1 mouse_genomes_project 8 92463900 92538408 - lincRNA lincRNA MGP_C57BL6NJ_T0090601.1 MGP_C57BL6NJ_G0034469.1 mouse_genomes_project 8 99816308 99828802 - MGP_C57BL6NJ_P0090601 Dok4 protein_coding protein_coding MGP_C57BL6NJ_T0089034.1 MGP_C57BL6NJ_G0033981.1 mouse_genomes_project 8 24846688 24852858 + MGP_C57BL6NJ_P0089034 Star protein_coding protein_coding MGP_C57BL6NJ_T0090817.1 MGP_C57BL6NJ_G0034555.1 mouse_genomes_project 8 112133170 112141148 - MGP_C57BL6NJ_P0090817 Cenpt protein_coding protein_coding MGP_C57BL6NJ_T0100649.1 MGP_C57BL6NJ_G0038695.1 mouse_genomes_project 8 61654940 61655048 + Gm24847 snRNA snRNA MGP_C57BL6NJ_T0091207.1 MGP_C57BL6NJ_G0034693.1 mouse_genomes_project 8 127665638 127678250 - MGP_C57BL6NJ_P0091207 Fam92b protein_coding protein_coding MGP_C57BL6NJ_T0091208.1 MGP_C57BL6NJ_G0034693.1 mouse_genomes_project 8 127666627 127678147 - Fam92b protein_coding retained_intron MGP_C57BL6NJ_T0091209.1 MGP_C57BL6NJ_G0034693.1 mouse_genomes_project 8 127670981 127678211 - MGP_C57BL6NJ_P0091209 Fam92b protein_coding protein_coding MGP_C57BL6NJ_T0091210.1 MGP_C57BL6NJ_G0034693.1 mouse_genomes_project 8 127675500 127678231 - Fam92b protein_coding retained_intron MGP_C57BL6NJ_T0089149.1 MGP_C57BL6NJ_G0034025.1 mouse_genomes_project 8 33887086 33910992 + MGP_C57BL6NJ_P0089149 Saraf protein_coding protein_coding MGP_C57BL6NJ_T0091175.1 MGP_C57BL6NJ_G0034686.1 mouse_genomes_project 8 127224762 127246230 - MGP_C57BL6NJ_P0091175 Tldc1 protein_coding protein_coding MGP_C57BL6NJ_T0100660.1 MGP_C57BL6NJ_G0038706.1 mouse_genomes_project 8 86133552 86133615 - Gm25267 snRNA snRNA MGP_C57BL6NJ_T0011291.1 MGP_C57BL6NJ_G0009376.1 mouse_genomes_project 8 133096094 133096152 + Gm22197 miRNA miRNA MGP_C57BL6NJ_T0090017.1 MGP_C57BL6NJ_G0034292.1 mouse_genomes_project 8 78496881 78516994 + MGP_C57BL6NJ_P0090017 Mcm5 protein_coding protein_coding MGP_C57BL6NJ_T0089493.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63771124 64178299 - MGP_C57BL6NJ_P0089493 Palld protein_coding protein_coding MGP_C57BL6NJ_T0089494.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63771126 63848429 - MGP_C57BL6NJ_P0089494 Palld protein_coding protein_coding MGP_C57BL6NJ_T0089495.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63771130 64029197 - MGP_C57BL6NJ_P0089495 Palld protein_coding protein_coding MGP_C57BL6NJ_T0089496.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63772803 63773779 - Palld protein_coding retained_intron MGP_C57BL6NJ_T0089497.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63772899 64178320 - MGP_C57BL6NJ_P0089497 Palld protein_coding protein_coding MGP_C57BL6NJ_T0089498.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63773791 63848426 - MGP_C57BL6NJ_P0089498 Palld protein_coding protein_coding MGP_C57BL6NJ_T0089499.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63782999 63791720 - Palld protein_coding retained_intron MGP_C57BL6NJ_T0089500.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63949706 64029206 - Palld protein_coding retained_intron MGP_C57BL6NJ_T0089501.1 MGP_C57BL6NJ_G0034131.1 mouse_genomes_project 8 63973453 64029197 - Palld protein_coding retained_intron MGP_C57BL6NJ_T0089137.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807495 33812114 - Dctn6 protein_coding retained_intron MGP_C57BL6NJ_T0089138.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807498 33825849 - MGP_C57BL6NJ_P0089138 Dctn6 protein_coding protein_coding MGP_C57BL6NJ_T0089139.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807638 33825589 - MGP_C57BL6NJ_P0089139 Dctn6 protein_coding protein_coding MGP_C57BL6NJ_T0089140.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807653 33824867 - Dctn6 protein_coding processed_transcript MGP_C57BL6NJ_T0089141.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807671 33823427 - MGP_C57BL6NJ_P0089141 Dctn6 protein_coding protein_coding MGP_C57BL6NJ_T0089142.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807682 33810001 - Dctn6 protein_coding retained_intron MGP_C57BL6NJ_T0089143.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33807713 33824905 - MGP_C57BL6NJ_P0089143 Dctn6 protein_coding protein_coding MGP_C57BL6NJ_T0089144.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33809586 33814679 - Dctn6 protein_coding retained_intron MGP_C57BL6NJ_T0089145.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33811777 33825530 - Dctn6 protein_coding retained_intron MGP_C57BL6NJ_T0089146.1 MGP_C57BL6NJ_G0034022.1 mouse_genomes_project 8 33811987 33825516 - MGP_C57BL6NJ_P0089146 Dctn6 protein_coding protein_coding MGP_C57BL6NJ_T0089062.1 MGP_C57BL6NJ_G0033990.1 mouse_genomes_project 8 26127394 26134874 + MGP_C57BL6NJ_P0089062 Zfp703 protein_coding protein_coding MGP_C57BL6NJ_T0089063.1 MGP_C57BL6NJ_G0033990.1 mouse_genomes_project 8 26127394 26134874 + MGP_C57BL6NJ_P0089063 Zfp703 protein_coding protein_coding MGP_C57BL6NJ_T0089814.1 MGP_C57BL6NJ_G0034224.1 mouse_genomes_project 8 73789815 73805920 + MGP_C57BL6NJ_P0089814 Il12rb1 protein_coding protein_coding MGP_C57BL6NJ_T0088757.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11299858 11316947 - Rasa3 protein_coding retained_intron MGP_C57BL6NJ_T0088758.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11299858 11412740 - MGP_C57BL6NJ_P0088758 Rasa3 protein_coding protein_coding MGP_C57BL6NJ_T0088759.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11310378 11310952 - Rasa3 protein_coding retained_intron MGP_C57BL6NJ_T0088760.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11328717 11339017 - Rasa3 protein_coding retained_intron MGP_C57BL6NJ_T0088761.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11328718 11412588 - MGP_C57BL6NJ_P0088761 Rasa3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088762.1 MGP_C57BL6NJ_G0033877.1 mouse_genomes_project 8 11331003 11412620 - Rasa3 protein_coding retained_intron MGP_C57BL6NJ_T0016434.1 MGP_C57BL6NJ_G0014479.1 mouse_genomes_project 8 42296366 42300578 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0089557.1 MGP_C57BL6NJ_G0034152.1 mouse_genomes_project 8 70131550 70139260 + MGP_C57BL6NJ_P0089557 Nat2 protein_coding protein_coding MGP_C57BL6NJ_T0089558.1 MGP_C57BL6NJ_G0034152.1 mouse_genomes_project 8 70131631 70139264 + MGP_C57BL6NJ_P0089558 Nat2 protein_coding protein_coding MGP_C57BL6NJ_T0090125.1 MGP_C57BL6NJ_G0034333.1 mouse_genomes_project 8 87729134 87733570 + Ptger1 protein_coding retained_intron MGP_C57BL6NJ_T0090126.1 MGP_C57BL6NJ_G0034333.1 mouse_genomes_project 8 87729164 87735055 + MGP_C57BL6NJ_P0090126 Ptger1 protein_coding protein_coding MGP_C57BL6NJ_T0089976.1 MGP_C57BL6NJ_G0034276.1 mouse_genomes_project 8 75584093 75675999 - MGP_C57BL6NJ_P0089976 Eps15l1 protein_coding protein_coding MGP_C57BL6NJ_T0088975.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754756 23884705 - MGP_C57BL6NJ_P0088975 Adam32 protein_coding protein_coding MGP_C57BL6NJ_T0088976.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754759 23782039 - Adam32 protein_coding retained_intron MGP_C57BL6NJ_T0088977.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754759 23796152 - MGP_C57BL6NJ_P0088977 Adam32 protein_coding protein_coding MGP_C57BL6NJ_T0088978.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754762 23884696 - MGP_C57BL6NJ_P0088978 Adam32 protein_coding protein_coding MGP_C57BL6NJ_T0088979.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754762 23809928 - MGP_C57BL6NJ_P0088979 Adam32 protein_coding protein_coding MGP_C57BL6NJ_T0088980.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23754821 23780913 - MGP_C57BL6NJ_P0088980 Adam32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088981.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23840531 23884682 - MGP_C57BL6NJ_P0088981 Adam32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088982.1 MGP_C57BL6NJ_G0033967.1 mouse_genomes_project 8 23850599 23884705 - Adam32 protein_coding retained_intron MGP_C57BL6NJ_T0089532.1 MGP_C57BL6NJ_G0034143.1 mouse_genomes_project 8 67467339 67473052 - MGP_C57BL6NJ_P0089532 protein_coding protein_coding MGP_C57BL6NJ_T0089533.1 MGP_C57BL6NJ_G0034143.1 mouse_genomes_project 8 67469219 67491886 - protein_coding processed_transcript MGP_C57BL6NJ_T0089534.1 MGP_C57BL6NJ_G0034143.1 mouse_genomes_project 8 67482025 67491962 - MGP_C57BL6NJ_P0089534 protein_coding protein_coding MGP_C57BL6NJ_T0089535.1 MGP_C57BL6NJ_G0034143.1 mouse_genomes_project 8 67482025 67492126 - MGP_C57BL6NJ_P0089535 protein_coding protein_coding MGP_C57BL6NJ_T0090872.1 MGP_C57BL6NJ_G0034576.1 mouse_genomes_project 8 112754460 112765011 + MGP_C57BL6NJ_P0090872 Zfp90 protein_coding protein_coding MGP_C57BL6NJ_T0009325.1 MGP_C57BL6NJ_G0007500.1 mouse_genomes_project 8 91569181 91659294 + Gm27169 lincRNA lincRNA MGP_C57BL6NJ_T0005537.1 MGP_C57BL6NJ_G0004688.1 mouse_genomes_project 8 99290639 99298373 - Gm15890 antisense antisense MGP_C57BL6NJ_T0009370.1 MGP_C57BL6NJ_G0007526.1 mouse_genomes_project 8 116908772 116910987 - Gm26832 lincRNA lincRNA MGP_C57BL6NJ_T0090976.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117396773 117417880 + MGP_C57BL6NJ_P0090976 Mtss1l protein_coding protein_coding MGP_C57BL6NJ_T0090977.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117397019 117418350 + MGP_C57BL6NJ_P0090977 Mtss1l protein_coding protein_coding MGP_C57BL6NJ_T0090978.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117402902 117408490 + Mtss1l protein_coding processed_transcript MGP_C57BL6NJ_T0090979.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117403831 117414133 + MGP_C57BL6NJ_P0090979 Mtss1l protein_coding protein_coding MGP_C57BL6NJ_T0090980.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117403842 117414553 + MGP_C57BL6NJ_P0090980 Mtss1l protein_coding protein_coding MGP_C57BL6NJ_T0090981.1 MGP_C57BL6NJ_G0034619.1 mouse_genomes_project 8 117413596 117414861 + Mtss1l protein_coding retained_intron MGP_C57BL6NJ_T0091328.1 MGP_C57BL6NJ_G0034718.1 mouse_genomes_project 8 130146590 130155179 - MGP_C57BL6NJ_P0091328 Cyba protein_coding protein_coding MGP_C57BL6NJ_T0089009.1 MGP_C57BL6NJ_G0033974.1 mouse_genomes_project 8 24591763 24612131 - MGP_C57BL6NJ_P0089009 Letm2 protein_coding protein_coding MGP_C57BL6NJ_T0090486.1 MGP_C57BL6NJ_G0034431.1 mouse_genomes_project 8 97447670 97454339 + MGP_C57BL6NJ_P0090486 Irx6 protein_coding protein_coding MGP_C57BL6NJ_T0090487.1 MGP_C57BL6NJ_G0034431.1 mouse_genomes_project 8 97448208 97454339 + MGP_C57BL6NJ_P0090487 Irx6 protein_coding protein_coding MGP_C57BL6NJ_T0091427.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131118086 131177712 - MGP_C57BL6NJ_P0091427 Fanca protein_coding protein_coding MGP_C57BL6NJ_T0091428.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131119076 131124010 - Fanca protein_coding processed_transcript MGP_C57BL6NJ_T0091429.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131120991 131127401 - MGP_C57BL6NJ_P0091429 Fanca protein_coding protein_coding MGP_C57BL6NJ_T0091430.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131123944 131126385 - MGP_C57BL6NJ_P0091430 Fanca protein_coding protein_coding MGP_C57BL6NJ_T0091431.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131127248 131133337 - Fanca protein_coding retained_intron MGP_C57BL6NJ_T0091432.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131136841 131177696 - Fanca protein_coding retained_intron MGP_C57BL6NJ_T0091433.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131137056 131165111 - MGP_C57BL6NJ_P0091433 Fanca protein_coding protein_coding MGP_C57BL6NJ_T0091434.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131140013 131142935 - Fanca protein_coding retained_intron MGP_C57BL6NJ_T0091435.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131153832 131177696 - MGP_C57BL6NJ_P0091435 Fanca protein_coding protein_coding MGP_C57BL6NJ_T0091436.1 MGP_C57BL6NJ_G0034744.1 mouse_genomes_project 8 131164031 131177696 - Fanca protein_coding retained_intron MGP_C57BL6NJ_T0089745.1 MGP_C57BL6NJ_G0034203.1 mouse_genomes_project 8 73436471 73451988 + MGP_C57BL6NJ_P0089745 Crlf1 protein_coding protein_coding MGP_C57BL6NJ_T0089746.1 MGP_C57BL6NJ_G0034203.1 mouse_genomes_project 8 73436674 73448837 + MGP_C57BL6NJ_P0089746 Crlf1 protein_coding protein_coding MGP_C57BL6NJ_T0089747.1 MGP_C57BL6NJ_G0034203.1 mouse_genomes_project 8 73449039 73451937 + MGP_C57BL6NJ_P0089747 Crlf1 protein_coding protein_coding MGP_C57BL6NJ_T0089358.1 MGP_C57BL6NJ_G0034086.1 mouse_genomes_project 8 47457970 47485344 + MGP_C57BL6NJ_P0089358 Casp3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091529.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133823321 133840707 + Ntpcr protein_coding processed_transcript MGP_C57BL6NJ_T0091530.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133823386 133843217 + MGP_C57BL6NJ_P0091530 Ntpcr protein_coding protein_coding MGP_C57BL6NJ_T0091531.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133823390 133833552 + Ntpcr protein_coding processed_transcript MGP_C57BL6NJ_T0091532.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133826448 133843442 + Ntpcr protein_coding processed_transcript MGP_C57BL6NJ_T0091533.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133829618 133843643 + MGP_C57BL6NJ_P0091533 Ntpcr protein_coding protein_coding MGP_C57BL6NJ_T0091534.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133829648 133831745 + Ntpcr protein_coding retained_intron MGP_C57BL6NJ_T0091535.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133829653 133834595 + MGP_C57BL6NJ_P0091535 Ntpcr protein_coding protein_coding MGP_C57BL6NJ_T0091536.1 MGP_C57BL6NJ_G0034781.1 mouse_genomes_project 8 133831250 133843405 + MGP_C57BL6NJ_P0091536 Ntpcr protein_coding protein_coding MGP_C57BL6NJ_T0005564.1 MGP_C57BL6NJ_G0004711.1 mouse_genomes_project 8 130499393 130501694 + Gm10612 antisense antisense MGP_C57BL6NJ_T0089664.1 MGP_C57BL6NJ_G0034187.1 mouse_genomes_project 8 73038158 73040565 + MGP_C57BL6NJ_P0089664 Nr2c2ap protein_coding protein_coding MGP_C57BL6NJ_T0091478.1 MGP_C57BL6NJ_G0034763.1 mouse_genomes_project 8 132338577 132355248 - MGP_C57BL6NJ_P0091478 Pgbd5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091479.1 MGP_C57BL6NJ_G0034763.1 mouse_genomes_project 8 132338582 132413463 - MGP_C57BL6NJ_P0091479 Pgbd5 protein_coding protein_coding MGP_C57BL6NJ_T0091480.1 MGP_C57BL6NJ_G0034763.1 mouse_genomes_project 8 132338586 132408147 - MGP_C57BL6NJ_P0091480 Pgbd5 protein_coding protein_coding MGP_C57BL6NJ_T0091481.1 MGP_C57BL6NJ_G0034763.1 mouse_genomes_project 8 132341438 132344426 - Pgbd5 protein_coding processed_transcript MGP_C57BL6NJ_T0091482.1 MGP_C57BL6NJ_G0034763.1 mouse_genomes_project 8 132341454 132343991 - Pgbd5 protein_coding retained_intron MGP_C57BL6NJ_T0009311.1 MGP_C57BL6NJ_G0007488.1 mouse_genomes_project 8 84909703 84935581 + lincRNA lincRNA MGP_C57BL6NJ_T0016476.1 MGP_C57BL6NJ_G0014521.1 mouse_genomes_project 8 113323427 113325164 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0090515.1 MGP_C57BL6NJ_G0034443.1 mouse_genomes_project 8 98174163 98187147 - MGP_C57BL6NJ_P0090515 Ces1h protein_coding protein_coding MGP_C57BL6NJ_T0091111.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124087106 124092946 - Cmc2 protein_coding retained_intron MGP_C57BL6NJ_T0091112.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124087106 124118875 - MGP_C57BL6NJ_P0091112 Cmc2 protein_coding protein_coding MGP_C57BL6NJ_T0091113.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124087700 124118842 - MGP_C57BL6NJ_P0091113 Cmc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091114.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124087954 124118859 - MGP_C57BL6NJ_P0091114 Cmc2 protein_coding protein_coding MGP_C57BL6NJ_T0091115.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124088036 124118866 - Cmc2 protein_coding processed_transcript MGP_C57BL6NJ_T0091116.1 MGP_C57BL6NJ_G0034659.1 mouse_genomes_project 8 124088053 124118785 - MGP_C57BL6NJ_P0091116 Cmc2 protein_coding protein_coding MGP_C57BL6NJ_T0090792.1 MGP_C57BL6NJ_G0034543.1 mouse_genomes_project 8 111761247 111818459 - MGP_C57BL6NJ_P0090792 Atp6v0d1 protein_coding protein_coding MGP_C57BL6NJ_T0090793.1 MGP_C57BL6NJ_G0034543.1 mouse_genomes_project 8 111774564 111784570 - Atp6v0d1 protein_coding retained_intron MGP_C57BL6NJ_T0011233.1 MGP_C57BL6NJ_G0009318.1 mouse_genomes_project 8 73922183 73922277 + Mir1969 miRNA miRNA MGP_C57BL6NJ_T0091296.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129656889 129704674 + MGP_C57BL6NJ_P0091296 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091297.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657631 129734921 + MGP_C57BL6NJ_P0091297 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091298.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657683 129738002 + MGP_C57BL6NJ_P0091298 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091299.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657714 129704672 + MGP_C57BL6NJ_P0091299 Banp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091300.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657719 129734681 + MGP_C57BL6NJ_P0091300 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091301.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657724 129699060 + MGP_C57BL6NJ_P0091301 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091302.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657735 129699051 + MGP_C57BL6NJ_P0091302 Banp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091303.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129657744 129699077 + MGP_C57BL6NJ_P0091303 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091304.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129682227 129684265 + Banp protein_coding retained_intron MGP_C57BL6NJ_T0091305.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129682275 129734379 + MGP_C57BL6NJ_P0091305 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091306.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129686099 129697493 + Banp protein_coding retained_intron MGP_C57BL6NJ_T0091307.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129698948 129704729 + Banp protein_coding retained_intron MGP_C57BL6NJ_T0091308.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129699094 129734702 + MGP_C57BL6NJ_P0091308 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091309.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129704579 129734351 + MGP_C57BL6NJ_P0091309 Banp protein_coding protein_coding MGP_C57BL6NJ_T0091310.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129708159 129729387 + Banp protein_coding processed_transcript MGP_C57BL6NJ_T0091311.1 MGP_C57BL6NJ_G0034713.1 mouse_genomes_project 8 129708337 129715947 + Banp protein_coding retained_intron MGP_C57BL6NJ_T0089838.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499328 74500130 + MGP_C57BL6NJ_P0089838 Use1 protein_coding protein_coding MGP_C57BL6NJ_T0089839.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499360 74502241 + MGP_C57BL6NJ_P0089839 Use1 protein_coding protein_coding MGP_C57BL6NJ_T0089840.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499540 74502056 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089841.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499540 74502056 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089842.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499566 74501155 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089843.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499566 74501322 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089844.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499707 74501009 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089845.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74499964 74500538 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089846.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74500103 74502056 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0089847.1 MGP_C57BL6NJ_G0034236.1 mouse_genomes_project 8 74501115 74501995 + Use1 protein_coding retained_intron MGP_C57BL6NJ_T0002483.1 MGP_C57BL6NJ_G0002371.1 mouse_genomes_project 8 128091594 128092429 - TEC TEC MGP_C57BL6NJ_T0011261.1 MGP_C57BL6NJ_G0009346.1 mouse_genomes_project 8 100825313 100825377 - Mir7073 miRNA miRNA MGP_C57BL6NJ_T0091262.1 MGP_C57BL6NJ_G0034705.1 mouse_genomes_project 8 129188047 129200820 - MGP_C57BL6NJ_P0091262 1700018B08Rik protein_coding protein_coding MGP_C57BL6NJ_T0091263.1 MGP_C57BL6NJ_G0034705.1 mouse_genomes_project 8 129188095 129200735 - MGP_C57BL6NJ_P0091263 1700018B08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091264.1 MGP_C57BL6NJ_G0034705.1 mouse_genomes_project 8 129188095 129200735 - MGP_C57BL6NJ_P0091264 1700018B08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091265.1 MGP_C57BL6NJ_G0034705.1 mouse_genomes_project 8 129189080 129203186 - MGP_C57BL6NJ_P0091265 1700018B08Rik protein_coding protein_coding MGP_C57BL6NJ_T0090932.1 MGP_C57BL6NJ_G0034598.1 mouse_genomes_project 8 116052548 116107014 + MGP_C57BL6NJ_P0090932 Pmfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0088864.1 MGP_C57BL6NJ_G0033922.1 mouse_genomes_project 8 19547526 20320022 - MGP_C57BL6NJ_P0088864 protein_coding protein_coding MGP_C57BL6NJ_T0090329.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89296464 89305129 + MGP_C57BL6NJ_P0090329 Fbxw9 protein_coding protein_coding MGP_C57BL6NJ_T0090330.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89296465 89305132 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0090331.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89296506 89302820 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0090332.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89296938 89305125 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0090333.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89296976 89304889 + Fbxw9 protein_coding processed_transcript MGP_C57BL6NJ_T0090334.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89302602 89304333 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0090335.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89303575 89304370 + Fbxw9 protein_coding processed_transcript MGP_C57BL6NJ_T0090336.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89303629 89304372 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0090337.1 MGP_C57BL6NJ_G0034386.1 mouse_genomes_project 8 89304070 89304906 + Fbxw9 protein_coding retained_intron MGP_C57BL6NJ_T0016432.1 MGP_C57BL6NJ_G0014477.1 mouse_genomes_project 8 38208997 38211955 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099164.1 MGP_C57BL6NJ_G0037228.1 mouse_genomes_project 8 48665813 48665937 + n-R5s96 rRNA rRNA MGP_C57BL6NJ_T0090884.1 MGP_C57BL6NJ_G0034583.1 mouse_genomes_project 8 113283465 113318928 + MGP_C57BL6NJ_P0090884 Cirh1a protein_coding protein_coding MGP_C57BL6NJ_T0009288.1 MGP_C57BL6NJ_G0007467.1 mouse_genomes_project 8 41202728 41205965 - Gm26584 lincRNA lincRNA MGP_C57BL6NJ_T0011985.1 MGP_C57BL6NJ_G0010070.1 mouse_genomes_project 8 83756791 83756966 + Gm27820 misc_RNA misc_RNA MGP_C57BL6NJ_T0091469.1 MGP_C57BL6NJ_G0034759.1 mouse_genomes_project 8 131879115 131915174 - MGP_C57BL6NJ_P0091469 Abcb10 protein_coding protein_coding MGP_C57BL6NJ_T0011240.1 MGP_C57BL6NJ_G0009325.1 mouse_genomes_project 8 88118433 88118570 + Mir8111 miRNA miRNA MGP_C57BL6NJ_T0091356.1 MGP_C57BL6NJ_G0034727.1 mouse_genomes_project 8 130379790 130383753 + MGP_C57BL6NJ_P0091356 Trappc2l protein_coding protein_coding MGP_C57BL6NJ_T0011226.1 MGP_C57BL6NJ_G0009311.1 mouse_genomes_project 8 58384667 58384776 + Gm25992 miRNA miRNA MGP_C57BL6NJ_T0089600.1 MGP_C57BL6NJ_G0034161.1 mouse_genomes_project 8 71892229 71946339 - MGP_C57BL6NJ_P0089600 Lzts1 protein_coding protein_coding MGP_C57BL6NJ_T0089601.1 MGP_C57BL6NJ_G0034161.1 mouse_genomes_project 8 71895054 71900505 - MGP_C57BL6NJ_P0089601 Lzts1 protein_coding protein_coding MGP_C57BL6NJ_T0089602.1 MGP_C57BL6NJ_G0034161.1 mouse_genomes_project 8 71926207 71946329 - Lzts1 protein_coding processed_transcript MGP_C57BL6NJ_T0089603.1 MGP_C57BL6NJ_G0034161.1 mouse_genomes_project 8 71944267 71946319 - Lzts1 protein_coding processed_transcript MGP_C57BL6NJ_T0089604.1 MGP_C57BL6NJ_G0034161.1 mouse_genomes_project 8 71945827 71946303 - Lzts1 protein_coding retained_intron MGP_C57BL6NJ_T0090443.1 MGP_C57BL6NJ_G0034417.1 mouse_genomes_project 8 93101673 93110959 - MGP_C57BL6NJ_P0090443 Snx20 protein_coding protein_coding MGP_C57BL6NJ_T0089094.1 MGP_C57BL6NJ_G0034006.1 mouse_genomes_project 8 30609555 30637284 + MGP_C57BL6NJ_P0089094 Tti2 protein_coding protein_coding MGP_C57BL6NJ_T0011234.1 MGP_C57BL6NJ_G0009319.1 mouse_genomes_project 8 74786162 74786222 - Mir6769b miRNA miRNA MGP_C57BL6NJ_T0089910.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74779532 74829128 - MGP_C57BL6NJ_P0089910 Unc13a protein_coding protein_coding MGP_C57BL6NJ_T0089911.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74784169 74829107 - MGP_C57BL6NJ_P0089911 Unc13a protein_coding protein_coding MGP_C57BL6NJ_T0089912.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74791424 74798243 - MGP_C57BL6NJ_P0089912 Unc13a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089913.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74791690 74799414 - Unc13a protein_coding retained_intron MGP_C57BL6NJ_T0089914.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74798305 74803368 - MGP_C57BL6NJ_P0089914 Unc13a protein_coding protein_coding MGP_C57BL6NJ_T0089915.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74811021 74815878 - MGP_C57BL6NJ_P0089915 Unc13a protein_coding protein_coding MGP_C57BL6NJ_T0089916.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74817723 74829112 - Unc13a protein_coding retained_intron MGP_C57BL6NJ_T0089917.1 MGP_C57BL6NJ_G0034256.1 mouse_genomes_project 8 74817728 74825460 - Unc13a protein_coding retained_intron MGP_C57BL6NJ_T0091515.1 MGP_C57BL6NJ_G0034775.1 mouse_genomes_project 8 132900201 132907668 + MGP_C57BL6NJ_P0091515 Sprtn protein_coding protein_coding MGP_C57BL6NJ_T0089072.1 MGP_C57BL6NJ_G0033995.1 mouse_genomes_project 8 26306351 26342824 - MGP_C57BL6NJ_P0089072 Rab11fip1 protein_coding protein_coding MGP_C57BL6NJ_T0089073.1 MGP_C57BL6NJ_G0033995.1 mouse_genomes_project 8 26306351 26342824 - MGP_C57BL6NJ_P0089073 Rab11fip1 protein_coding protein_coding MGP_C57BL6NJ_T0089553.1 MGP_C57BL6NJ_G0034148.1 mouse_genomes_project 8 69228262 69236305 - MGP_C57BL6NJ_P0089553 Npy5r protein_coding protein_coding MGP_C57BL6NJ_T0091590.1 MGP_C57BL6NJ_G0034797.1 mouse_genomes_project 8 137403570 137406135 - MGP_C57BL6NJ_P0091590 Gm10999 protein_coding protein_coding MGP_C57BL6NJ_T0088899.1 MGP_C57BL6NJ_G0033944.1 mouse_genomes_project 8 21174662 21188927 - MGP_C57BL6NJ_P0088899 Smim19 protein_coding protein_coding MGP_C57BL6NJ_T0088900.1 MGP_C57BL6NJ_G0033944.1 mouse_genomes_project 8 21174662 21188927 - MGP_C57BL6NJ_P0088900 Smim19 protein_coding protein_coding MGP_C57BL6NJ_T0009293.1 MGP_C57BL6NJ_G0007472.1 mouse_genomes_project 8 58507836 58509173 + lincRNA lincRNA MGP_C57BL6NJ_T0089635.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715133 72769355 + MGP_C57BL6NJ_P0089635 Pbx4 protein_coding protein_coding MGP_C57BL6NJ_T0089636.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715266 72748010 + Pbx4 protein_coding retained_intron MGP_C57BL6NJ_T0089637.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715279 72769355 + MGP_C57BL6NJ_P0089637 Pbx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089638.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715302 72767749 + MGP_C57BL6NJ_P0089638 Pbx4 protein_coding protein_coding MGP_C57BL6NJ_T0089639.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715304 72769355 + MGP_C57BL6NJ_P0089639 Pbx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089640.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72715332 72769355 + MGP_C57BL6NJ_P0089640 Pbx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0089641.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72734470 72754772 + Pbx4 protein_coding processed_transcript MGP_C57BL6NJ_T0089642.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72755905 72767701 + Pbx4 protein_coding retained_intron MGP_C57BL6NJ_T0089643.1 MGP_C57BL6NJ_G0034175.1 mouse_genomes_project 8 72756079 72769355 + Pbx4 protein_coding retained_intron MGP_C57BL6NJ_T0090485.1 MGP_C57BL6NJ_G0034430.1 mouse_genomes_project 8 97089254 97092915 + MGP_C57BL6NJ_P0090485 Irx5 protein_coding protein_coding MGP_C57BL6NJ_T0016426.1 MGP_C57BL6NJ_G0014471.1 mouse_genomes_project 8 34065442 34065829 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091483.1 MGP_C57BL6NJ_G0034764.1 mouse_genomes_project 8 132497672 132531188 + MGP_C57BL6NJ_P0091483 Cog2 protein_coding protein_coding MGP_C57BL6NJ_T0091484.1 MGP_C57BL6NJ_G0034764.1 mouse_genomes_project 8 132497709 132506837 + MGP_C57BL6NJ_P0091484 Cog2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091485.1 MGP_C57BL6NJ_G0034764.1 mouse_genomes_project 8 132497710 132522680 + Cog2 protein_coding retained_intron MGP_C57BL6NJ_T0091486.1 MGP_C57BL6NJ_G0034764.1 mouse_genomes_project 8 132497724 132506809 + MGP_C57BL6NJ_P0091486 Cog2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091487.1 MGP_C57BL6NJ_G0034764.1 mouse_genomes_project 8 132512114 132521299 + Cog2 protein_coding retained_intron MGP_C57BL6NJ_T0011990.1 MGP_C57BL6NJ_G0010075.1 mouse_genomes_project 8 111404468 111404557 + Gm24629 misc_RNA misc_RNA MGP_C57BL6NJ_T0089183.1 MGP_C57BL6NJ_G0034042.1 mouse_genomes_project 8 40573857 40581641 - MGP_C57BL6NJ_P0089183 Fgf20 protein_coding protein_coding MGP_C57BL6NJ_T0089184.1 MGP_C57BL6NJ_G0034042.1 mouse_genomes_project 8 40574416 40605512 - MGP_C57BL6NJ_P0089184 Fgf20 protein_coding protein_coding MGP_C57BL6NJ_T0088614.1 MGP_C57BL6NJ_G0033830.1 mouse_genomes_project 8 1732654 1733481 - MGP_C57BL6NJ_P0088614 protein_coding protein_coding MGP_C57BL6NJ_T0101921.1 MGP_C57BL6NJ_G0039967.1 mouse_genomes_project 8 24625917 24626048 - Gm23184 snoRNA snoRNA MGP_C57BL6NJ_T0091002.1 MGP_C57BL6NJ_G0034624.1 mouse_genomes_project 8 117611084 117668833 + MGP_C57BL6NJ_P0091002 St3gal2 protein_coding protein_coding MGP_C57BL6NJ_T0091003.1 MGP_C57BL6NJ_G0034624.1 mouse_genomes_project 8 117611084 117666176 + MGP_C57BL6NJ_P0091003 St3gal2 protein_coding protein_coding MGP_C57BL6NJ_T0091004.1 MGP_C57BL6NJ_G0034624.1 mouse_genomes_project 8 117611120 117651842 + St3gal2 protein_coding processed_transcript MGP_C57BL6NJ_T0091005.1 MGP_C57BL6NJ_G0034624.1 mouse_genomes_project 8 117625178 117652041 + St3gal2 protein_coding processed_transcript MGP_C57BL6NJ_T0091006.1 MGP_C57BL6NJ_G0034624.1 mouse_genomes_project 8 117634153 117651867 + St3gal2 protein_coding processed_transcript MGP_C57BL6NJ_T0090270.1 MGP_C57BL6NJ_G0034370.1 mouse_genomes_project 8 89059515 89062390 - MGP_C57BL6NJ_P0090270 protein_coding protein_coding MGP_C57BL6NJ_T0005516.1 MGP_C57BL6NJ_G0004670.1 mouse_genomes_project 8 46951246 46954738 + Gm15634 antisense antisense MGP_C57BL6NJ_T0089059.1 MGP_C57BL6NJ_G0033989.1 mouse_genomes_project 8 25239070 25243799 + MGP_C57BL6NJ_P0089059 Thap1 protein_coding protein_coding MGP_C57BL6NJ_T0089060.1 MGP_C57BL6NJ_G0033989.1 mouse_genomes_project 8 25239091 25243634 + MGP_C57BL6NJ_P0089060 Thap1 protein_coding protein_coding MGP_C57BL6NJ_T0089061.1 MGP_C57BL6NJ_G0033989.1 mouse_genomes_project 8 25239113 25240271 + Thap1 protein_coding retained_intron MGP_C57BL6NJ_T0002467.1 MGP_C57BL6NJ_G0002356.1 mouse_genomes_project 8 1558122 1558336 - TEC TEC MGP_C57BL6NJ_T0089719.1 MGP_C57BL6NJ_G0034195.1 mouse_genomes_project 8 73226184 73237071 - MGP_C57BL6NJ_P0089719 Ddx49 protein_coding protein_coding MGP_C57BL6NJ_T0089720.1 MGP_C57BL6NJ_G0034195.1 mouse_genomes_project 8 73226195 73237034 - Ddx49 protein_coding retained_intron MGP_C57BL6NJ_T0089721.1 MGP_C57BL6NJ_G0034195.1 mouse_genomes_project 8 73226904 73229056 - Ddx49 protein_coding retained_intron MGP_C57BL6NJ_T0089722.1 MGP_C57BL6NJ_G0034195.1 mouse_genomes_project 8 73229138 73237045 - Ddx49 protein_coding retained_intron MGP_C57BL6NJ_T0091503.1 MGP_C57BL6NJ_G0034769.1 mouse_genomes_project 8 132712795 132725247 + MGP_C57BL6NJ_P0091503 Arv1 protein_coding protein_coding MGP_C57BL6NJ_T0090581.1 MGP_C57BL6NJ_G0034465.1 mouse_genomes_project 8 99748075 99749658 + MGP_C57BL6NJ_P0090581 Ccl17 protein_coding protein_coding MGP_C57BL6NJ_T0016458.1 MGP_C57BL6NJ_G0014503.1 mouse_genomes_project 8 85217628 85218601 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011993.1 MGP_C57BL6NJ_G0010078.1 mouse_genomes_project 8 119486377 119486482 + Gm22664 misc_RNA misc_RNA MGP_C57BL6NJ_T0091165.1 MGP_C57BL6NJ_G0034681.1 mouse_genomes_project 8 127046172 127054480 - MGP_C57BL6NJ_P0091165 Taf1c protein_coding protein_coding MGP_C57BL6NJ_T0091166.1 MGP_C57BL6NJ_G0034681.1 mouse_genomes_project 8 127046172 127054480 - MGP_C57BL6NJ_P0091166 Taf1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091167.1 MGP_C57BL6NJ_G0034681.1 mouse_genomes_project 8 127047016 127048043 - Taf1c protein_coding processed_transcript MGP_C57BL6NJ_T0091168.1 MGP_C57BL6NJ_G0034681.1 mouse_genomes_project 8 127047584 127048911 - Taf1c protein_coding retained_intron MGP_C57BL6NJ_T0091169.1 MGP_C57BL6NJ_G0034681.1 mouse_genomes_project 8 127047825 127049776 - Taf1c protein_coding processed_transcript MGP_C57BL6NJ_T0011290.1 MGP_C57BL6NJ_G0009375.1 mouse_genomes_project 8 131966674 131966756 + Mir1967 miRNA miRNA MGP_C57BL6NJ_T0089909.1 MGP_C57BL6NJ_G0034255.1 mouse_genomes_project 8 74765588 74780025 + MGP_C57BL6NJ_P0089909 Colgalt1 protein_coding protein_coding MGP_C57BL6NJ_T0099527.1 MGP_C57BL6NJ_G0037579.1 mouse_genomes_project 8 130866792 130869734 + 2810013P06Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0091067.1 MGP_C57BL6NJ_G0034642.1 mouse_genomes_project 8 118726178 118748164 - MGP_C57BL6NJ_P0091067 Chst5 protein_coding protein_coding MGP_C57BL6NJ_T0009319.1 MGP_C57BL6NJ_G0007495.1 mouse_genomes_project 8 91272496 91289012 + Gm27167 lincRNA lincRNA MGP_C57BL6NJ_T0016451.1 MGP_C57BL6NJ_G0014496.1 mouse_genomes_project 8 82146927 82148327 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0088484.1 MGP_C57BL6NJ_G0033796.1 mouse_genomes_project 8 417323 436928 + MGP_C57BL6NJ_P0088484 1700019B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0088485.1 MGP_C57BL6NJ_G0033796.1 mouse_genomes_project 8 417323 436928 + MGP_C57BL6NJ_P0088485 1700019B03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0088486.1 MGP_C57BL6NJ_G0033796.1 mouse_genomes_project 8 424135 436931 + MGP_C57BL6NJ_P0088486 1700019B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0009336.1 MGP_C57BL6NJ_G0007505.1 mouse_genomes_project 8 91844757 91861357 - Gm27016 lincRNA lincRNA MGP_C57BL6NJ_T0090326.1 MGP_C57BL6NJ_G0034385.1 mouse_genomes_project 8 89272468 89294038 + MGP_C57BL6NJ_P0090326 Tnpo2 protein_coding protein_coding MGP_C57BL6NJ_T0090327.1 MGP_C57BL6NJ_G0034385.1 mouse_genomes_project 8 89272721 89294038 + MGP_C57BL6NJ_P0090327 Tnpo2 protein_coding protein_coding MGP_C57BL6NJ_T0090328.1 MGP_C57BL6NJ_G0034385.1 mouse_genomes_project 8 89273944 89294042 + MGP_C57BL6NJ_P0090328 Tnpo2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0009289.1 MGP_C57BL6NJ_G0007468.1 mouse_genomes_project 8 42195449 42426665 + 2810404M03Rik lincRNA lincRNA MGP_C57BL6NJ_T0089096.1 MGP_C57BL6NJ_G0034008.1 mouse_genomes_project 8 30670323 30726360 + MGP_C57BL6NJ_P0089096 Fut10 protein_coding protein_coding MGP_C57BL6NJ_T0089097.1 MGP_C57BL6NJ_G0034008.1 mouse_genomes_project 8 30670339 30750433 + MGP_C57BL6NJ_P0089097 Fut10 protein_coding protein_coding MGP_C57BL6NJ_T0089098.1 MGP_C57BL6NJ_G0034008.1 mouse_genomes_project 8 30684253 30724595 + Fut10 protein_coding processed_transcript MGP_C57BL6NJ_T0090035.1 MGP_C57BL6NJ_G0034298.1 mouse_genomes_project 8 81184979 81198936 - MGP_C57BL6NJ_P0090035 Tmem184c protein_coding protein_coding MGP_C57BL6NJ_T0090036.1 MGP_C57BL6NJ_G0034298.1 mouse_genomes_project 8 81191783 81198981 - MGP_C57BL6NJ_P0090036 Tmem184c protein_coding protein_coding MGP_C57BL6NJ_T0090037.1 MGP_C57BL6NJ_G0034298.1 mouse_genomes_project 8 81195280 81198951 - MGP_C57BL6NJ_P0090037 Tmem184c protein_coding protein_coding MGP_C57BL6NJ_T0011279.1 MGP_C57BL6NJ_G0009364.1 mouse_genomes_project 8 124701015 124701072 + Mir7077 miRNA miRNA MGP_C57BL6NJ_T0089102.1 MGP_C57BL6NJ_G0034012.1 mouse_genomes_project 8 32909874 33064951 - MGP_C57BL6NJ_P0089102 Wrn protein_coding protein_coding MGP_C57BL6NJ_T0089103.1 MGP_C57BL6NJ_G0034012.1 mouse_genomes_project 8 32909874 33064951 - MGP_C57BL6NJ_P0089103 Wrn protein_coding protein_coding MGP_C57BL6NJ_T0101939.1 MGP_C57BL6NJ_G0039985.1 mouse_genomes_project 8 66259240 66259371 + Gm24580 snoRNA snoRNA MGP_C57BL6NJ_T0090773.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111588920 111601481 + MGP_C57BL6NJ_P0090773 Plekhg4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0090774.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111592513 111594800 + MGP_C57BL6NJ_P0090774 Plekhg4 protein_coding protein_coding MGP_C57BL6NJ_T0090775.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111594143 111602099 + MGP_C57BL6NJ_P0090775 Plekhg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090776.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111594620 111601481 + MGP_C57BL6NJ_P0090776 Plekhg4 protein_coding protein_coding MGP_C57BL6NJ_T0090777.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111594620 111602102 + MGP_C57BL6NJ_P0090777 Plekhg4 protein_coding protein_coding MGP_C57BL6NJ_T0090778.1 MGP_C57BL6NJ_G0034537.1 mouse_genomes_project 8 111599733 111602095 + Plekhg4 protein_coding retained_intron MGP_C57BL6NJ_T0091065.1 MGP_C57BL6NJ_G0034640.1 mouse_genomes_project 8 118589136 118682197 - MGP_C57BL6NJ_P0091065 Cfdp1 protein_coding protein_coding MGP_C57BL6NJ_T0101936.1 MGP_C57BL6NJ_G0039982.1 mouse_genomes_project 8 63015617 63015725 - Gm23329 snoRNA snoRNA MGP_C57BL6NJ_T0011242.1 MGP_C57BL6NJ_G0009327.1 mouse_genomes_project 8 88216632 88216720 + Mir709 miRNA miRNA MGP_C57BL6NJ_T0090325.1 MGP_C57BL6NJ_G0034384.1 mouse_genomes_project 8 89260632 89264083 + MGP_C57BL6NJ_P0090325 2310036O22Rik protein_coding protein_coding MGP_C57BL6NJ_T0099163.1 MGP_C57BL6NJ_G0037227.1 mouse_genomes_project 8 45262660 45262767 + Gm26089 rRNA rRNA MGP_C57BL6NJ_T0089385.1 MGP_C57BL6NJ_G0034098.1 mouse_genomes_project 8 48825404 48826398 + MGP_C57BL6NJ_P0089385 Cldn22 protein_coding protein_coding MGP_C57BL6NJ_T0091312.1 MGP_C57BL6NJ_G0034714.1 mouse_genomes_project 8 129996994 130055963 + MGP_C57BL6NJ_P0091312 Zfpm1 protein_coding protein_coding MGP_C57BL6NJ_T0091313.1 MGP_C57BL6NJ_G0034714.1 mouse_genomes_project 8 130025174 130041630 + Zfpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0091314.1 MGP_C57BL6NJ_G0034714.1 mouse_genomes_project 8 130051417 130053741 + Zfpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0091315.1 MGP_C57BL6NJ_G0034714.1 mouse_genomes_project 8 130051505 130054473 + MGP_C57BL6NJ_P0091315 Zfpm1 protein_coding protein_coding MGP_C57BL6NJ_T0089031.1 MGP_C57BL6NJ_G0033978.1 mouse_genomes_project 8 24789407 24806361 + MGP_C57BL6NJ_P0089031 protein_coding protein_coding MGP_C57BL6NJ_T0089412.1 MGP_C57BL6NJ_G0034106.1 mouse_genomes_project 8 56191269 56200835 - MGP_C57BL6NJ_P0089412 Spcs3 protein_coding protein_coding MGP_C57BL6NJ_T0089360.1 MGP_C57BL6NJ_G0034088.1 mouse_genomes_project 8 47859885 47906394 + Enpp6 protein_coding retained_intron MGP_C57BL6NJ_T0089361.1 MGP_C57BL6NJ_G0034088.1 mouse_genomes_project 8 47859887 47977327 + Enpp6 protein_coding retained_intron MGP_C57BL6NJ_T0089362.1 MGP_C57BL6NJ_G0034088.1 mouse_genomes_project 8 47859887 47977327 + MGP_C57BL6NJ_P0089362 Enpp6 protein_coding protein_coding MGP_C57BL6NJ_T0089363.1 MGP_C57BL6NJ_G0034088.1 mouse_genomes_project 8 47859914 47970854 + MGP_C57BL6NJ_P0089363 Enpp6 protein_coding protein_coding MGP_C57BL6NJ_T0089364.1 MGP_C57BL6NJ_G0034088.1 mouse_genomes_project 8 47956290 47971536 + MGP_C57BL6NJ_P0089364 Enpp6 protein_coding protein_coding MGP_C57BL6NJ_T0090934.1 MGP_C57BL6NJ_G0034600.1 mouse_genomes_project 8 116131904 116140062 + MGP_C57BL6NJ_P0090934 Txnl4b protein_coding protein_coding MGP_C57BL6NJ_T0090935.1 MGP_C57BL6NJ_G0034600.1 mouse_genomes_project 8 116134898 116139534 + MGP_C57BL6NJ_P0090935 Txnl4b protein_coding protein_coding MGP_C57BL6NJ_T0005569.1 MGP_C57BL6NJ_G0004716.1 mouse_genomes_project 8 134000525 134012278 + A730098A19Rik antisense antisense MGP_C57BL6NJ_T0091550.1 MGP_C57BL6NJ_G0034790.1 mouse_genomes_project 8 135120361 135147545 - MGP_C57BL6NJ_P0091550 Rbm34 protein_coding protein_coding MGP_C57BL6NJ_T0090364.1 MGP_C57BL6NJ_G0034395.1 mouse_genomes_project 8 89524958 89569189 - MGP_C57BL6NJ_P0090364 Vps35 protein_coding protein_coding MGP_C57BL6NJ_T0009323.1 MGP_C57BL6NJ_G0007499.1 mouse_genomes_project 8 91535976 91565995 - Gm10637 lincRNA lincRNA MGP_C57BL6NJ_T0009324.1 MGP_C57BL6NJ_G0007499.1 mouse_genomes_project 8 91561238 91566006 - Gm10637 lincRNA lincRNA MGP_C57BL6NJ_T0009344.1 MGP_C57BL6NJ_G0007511.1 mouse_genomes_project 8 96612963 96618465 - Gm28515 lincRNA lincRNA MGP_C57BL6NJ_T0089439.1 MGP_C57BL6NJ_G0034115.1 mouse_genomes_project 8 58374469 58395374 + Fbxo8 protein_coding retained_intron MGP_C57BL6NJ_T0089440.1 MGP_C57BL6NJ_G0034115.1 mouse_genomes_project 8 58374510 58415873 + MGP_C57BL6NJ_P0089440 Fbxo8 protein_coding protein_coding MGP_C57BL6NJ_T0088481.1 MGP_C57BL6NJ_G0033795.1 mouse_genomes_project 8 400197 412256 - MGP_C57BL6NJ_P0088481 Pex11g protein_coding protein_coding MGP_C57BL6NJ_T0088482.1 MGP_C57BL6NJ_G0033795.1 mouse_genomes_project 8 400200 412221 - MGP_C57BL6NJ_P0088482 Pex11g protein_coding protein_coding MGP_C57BL6NJ_T0088483.1 MGP_C57BL6NJ_G0033795.1 mouse_genomes_project 8 407795 412246 - MGP_C57BL6NJ_P0088483 Pex11g protein_coding protein_coding MGP_C57BL6NJ_T0101976.1 MGP_C57BL6NJ_G0040022.1 mouse_genomes_project 8 137387416 137387548 - Gm22374 snoRNA snoRNA MGP_C57BL6NJ_T0100651.1 MGP_C57BL6NJ_G0038697.1 mouse_genomes_project 8 68151503 68151610 - Gm23515 snRNA snRNA MGP_C57BL6NJ_T0088534.1 MGP_C57BL6NJ_G0033809.1 mouse_genomes_project 8 674579 688632 - MGP_C57BL6NJ_P0088534 Fcer2a protein_coding protein_coding MGP_C57BL6NJ_T0091261.1 MGP_C57BL6NJ_G0034704.1 mouse_genomes_project 8 128745791 128748496 + MGP_C57BL6NJ_P0091261 Foxl1 protein_coding protein_coding MGP_C57BL6NJ_T0091450.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131368220 131396174 + MGP_C57BL6NJ_P0091450 Afg3l1 protein_coding protein_coding MGP_C57BL6NJ_T0091451.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131368220 131396174 + MGP_C57BL6NJ_P0091451 Afg3l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091452.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131368257 131371334 + Afg3l1 protein_coding retained_intron MGP_C57BL6NJ_T0091453.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131370406 131382251 + Afg3l1 protein_coding processed_transcript MGP_C57BL6NJ_T0091454.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131385218 131391191 + Afg3l1 protein_coding retained_intron MGP_C57BL6NJ_T0091455.1 MGP_C57BL6NJ_G0034750.1 mouse_genomes_project 8 131393343 131393873 + Afg3l1 protein_coding retained_intron MGP_C57BL6NJ_T0009372.1 MGP_C57BL6NJ_G0007528.1 mouse_genomes_project 8 127592507 127594830 + A130014A01Rik lincRNA lincRNA MGP_C57BL6NJ_T0089889.1 MGP_C57BL6NJ_G0034247.1 mouse_genomes_project 8 74636613 74649589 - MGP_C57BL6NJ_P0089889 Plvap protein_coding protein_coding MGP_C57BL6NJ_T0011986.1 MGP_C57BL6NJ_G0010071.1 mouse_genomes_project 8 87821734 87822021 + Gm22024 misc_RNA misc_RNA MGP_C57BL6NJ_T0089041.1 MGP_C57BL6NJ_G0033983.1 mouse_genomes_project 8 24890952 24993890 + MGP_C57BL6NJ_P0089041 Kcnu1 protein_coding protein_coding MGP_C57BL6NJ_T0089042.1 MGP_C57BL6NJ_G0033983.1 mouse_genomes_project 8 24962461 24993891 + MGP_C57BL6NJ_P0089042 Kcnu1 protein_coding protein_coding MGP_C57BL6NJ_T0089043.1 MGP_C57BL6NJ_G0033983.1 mouse_genomes_project 8 24962473 24974279 + MGP_C57BL6NJ_P0089043 Kcnu1 protein_coding protein_coding MGP_C57BL6NJ_T0101940.1 MGP_C57BL6NJ_G0039986.1 mouse_genomes_project 8 68411907 68412042 + Gm26123 snoRNA snoRNA MGP_C57BL6NJ_T0089162.1 MGP_C57BL6NJ_G0034035.1 mouse_genomes_project 8 36174185 36210811 - MGP_C57BL6NJ_P0089162 Lonrf1 protein_coding protein_coding MGP_C57BL6NJ_T0091537.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133846913 134000929 - MGP_C57BL6NJ_P0091537 Pcnx2 protein_coding protein_coding MGP_C57BL6NJ_T0091538.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133846914 133942238 - Pcnx2 protein_coding retained_intron MGP_C57BL6NJ_T0091539.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133846916 133870499 - Pcnx2 protein_coding retained_intron MGP_C57BL6NJ_T0091540.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133928481 133930358 - Pcnx2 protein_coding retained_intron MGP_C57BL6NJ_T0091541.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133939994 134000929 - MGP_C57BL6NJ_P0091541 Pcnx2 protein_coding protein_coding MGP_C57BL6NJ_T0091542.1 MGP_C57BL6NJ_G0034782.1 mouse_genomes_project 8 133963876 134000887 - Pcnx2 protein_coding processed_transcript MGP_C57BL6NJ_T0089979.1 MGP_C57BL6NJ_G0034278.1 mouse_genomes_project 8 75704093 75727807 + MGP_C57BL6NJ_P0089979 1700030K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0089980.1 MGP_C57BL6NJ_G0034278.1 mouse_genomes_project 8 75704145 75727447 + MGP_C57BL6NJ_P0089980 1700030K09Rik protein_coding protein_coding MGP_C57BL6NJ_T0089981.1 MGP_C57BL6NJ_G0034278.1 mouse_genomes_project 8 75724695 75725457 + 1700030K09Rik protein_coding retained_intron MGP_C57BL6NJ_T0090642.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100743327 100781463 + MGP_C57BL6NJ_P0090642 Ndrg4 protein_coding protein_coding MGP_C57BL6NJ_T0090643.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100744432 100787203 + MGP_C57BL6NJ_P0090643 Ndrg4 protein_coding protein_coding MGP_C57BL6NJ_T0090644.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100744589 100787199 + MGP_C57BL6NJ_P0090644 Ndrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090645.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100744624 100787212 + MGP_C57BL6NJ_P0090645 Ndrg4 protein_coding protein_coding MGP_C57BL6NJ_T0090646.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100778892 100783391 + Ndrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0090647.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100781428 100783889 + Ndrg4 protein_coding retained_intron MGP_C57BL6NJ_T0090648.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100782225 100786165 + Ndrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0090649.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100782784 100783798 + Ndrg4 protein_coding retained_intron MGP_C57BL6NJ_T0090650.1 MGP_C57BL6NJ_G0034487.1 mouse_genomes_project 8 100784143 100785462 + Ndrg4 protein_coding retained_intron MGP_C57BL6NJ_T0090897.1 MGP_C57BL6NJ_G0034589.1 mouse_genomes_project 8 113468190 113472278 - MGP_C57BL6NJ_P0090897 Tmed6 protein_coding protein_coding MGP_C57BL6NJ_T0098908.1 MGP_C57BL6NJ_G0036972.1 mouse_genomes_project 8 130185887 130187872 + pseudogene pseudogene MGP_C57BL6NJ_T0088893.1 MGP_C57BL6NJ_G0033940.1 mouse_genomes_project 8 20923848 20960613 + MGP_C57BL6NJ_P0088893 Thsd1 protein_coding protein_coding MGP_C57BL6NJ_T0088894.1 MGP_C57BL6NJ_G0033940.1 mouse_genomes_project 8 20923880 20959658 + MGP_C57BL6NJ_P0088894 Thsd1 protein_coding protein_coding MGP_C57BL6NJ_T0088895.1 MGP_C57BL6NJ_G0033940.1 mouse_genomes_project 8 20923897 20959656 + Thsd1 protein_coding processed_transcript MGP_C57BL6NJ_T0091073.1 MGP_C57BL6NJ_G0034646.1 mouse_genomes_project 8 118843290 118861553 - MGP_C57BL6NJ_P0091073 Kars protein_coding protein_coding MGP_C57BL6NJ_T0091074.1 MGP_C57BL6NJ_G0034646.1 mouse_genomes_project 8 118843294 118861588 - MGP_C57BL6NJ_P0091074 Kars protein_coding protein_coding MGP_C57BL6NJ_T0091075.1 MGP_C57BL6NJ_G0034646.1 mouse_genomes_project 8 118843294 118861531 - MGP_C57BL6NJ_P0091075 Kars protein_coding protein_coding MGP_C57BL6NJ_T0089305.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46756810 46782353 + MGP_C57BL6NJ_P0089305 Ufsp2 protein_coding protein_coding MGP_C57BL6NJ_T0089306.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46756816 46782252 + Ufsp2 protein_coding retained_intron MGP_C57BL6NJ_T0089307.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46756826 46764257 + Ufsp2 protein_coding retained_intron MGP_C57BL6NJ_T0089308.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46756832 46768763 + Ufsp2 protein_coding processed_transcript MGP_C57BL6NJ_T0089309.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46756860 46763774 + Ufsp2 protein_coding processed_transcript MGP_C57BL6NJ_T0089310.1 MGP_C57BL6NJ_G0034076.1 mouse_genomes_project 8 46780522 46782255 + Ufsp2 protein_coding retained_intron MGP_C57BL6NJ_T0089940.1 MGP_C57BL6NJ_G0034263.1 mouse_genomes_project 8 75110685 75121073 + MGP_C57BL6NJ_P0089940 Zfp617 protein_coding protein_coding MGP_C57BL6NJ_T0088793.1 MGP_C57BL6NJ_G0033890.1 mouse_genomes_project 8 12669207 12682577 + MGP_C57BL6NJ_P0088793 Cln8 protein_coding protein_coding MGP_C57BL6NJ_T0088794.1 MGP_C57BL6NJ_G0033890.1 mouse_genomes_project 8 12675905 12682920 + MGP_C57BL6NJ_P0088794 Cln8 protein_coding protein_coding MGP_C57BL6NJ_T0088795.1 MGP_C57BL6NJ_G0033890.1 mouse_genomes_project 8 12675971 12689581 + MGP_C57BL6NJ_P0088795 Cln8 protein_coding protein_coding MGP_C57BL6NJ_T0088796.1 MGP_C57BL6NJ_G0033890.1 mouse_genomes_project 8 12676864 12682647 + MGP_C57BL6NJ_P0088796 Cln8 protein_coding protein_coding MGP_C57BL6NJ_T0088797.1 MGP_C57BL6NJ_G0033890.1 mouse_genomes_project 8 12677219 12682780 + MGP_C57BL6NJ_P0088797 Cln8 protein_coding protein_coding MGP_C57BL6NJ_T0005489.1 MGP_C57BL6NJ_G0004651.1 mouse_genomes_project 8 10504581 10508166 - Gm15350 antisense antisense MGP_C57BL6NJ_T0005490.1 MGP_C57BL6NJ_G0004651.1 mouse_genomes_project 8 10504581 10510111 - Gm15350 antisense antisense MGP_C57BL6NJ_T0091405.1 MGP_C57BL6NJ_G0034741.1 mouse_genomes_project 8 131077305 131081257 - MGP_C57BL6NJ_P0091405 Spata2l protein_coding protein_coding MGP_C57BL6NJ_T0091406.1 MGP_C57BL6NJ_G0034741.1 mouse_genomes_project 8 131077308 131081260 - MGP_C57BL6NJ_P0091406 Spata2l protein_coding protein_coding MGP_C57BL6NJ_T0090287.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89117966 89120876 + MGP_C57BL6NJ_P0090287 Dnase2a protein_coding protein_coding MGP_C57BL6NJ_T0090288.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89117966 89121115 + MGP_C57BL6NJ_P0090288 Dnase2a protein_coding protein_coding MGP_C57BL6NJ_T0090289.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89118053 89118607 + Dnase2a protein_coding retained_intron MGP_C57BL6NJ_T0090290.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89118053 89118875 + Dnase2a protein_coding retained_intron MGP_C57BL6NJ_T0090291.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89118096 89119332 + MGP_C57BL6NJ_P0090291 Dnase2a protein_coding protein_coding MGP_C57BL6NJ_T0090292.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89118127 89123876 + Dnase2a protein_coding processed_transcript MGP_C57BL6NJ_T0090293.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89118137 89119371 + MGP_C57BL6NJ_P0090293 Dnase2a protein_coding protein_coding MGP_C57BL6NJ_T0090294.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89119241 89120868 + Dnase2a protein_coding processed_transcript MGP_C57BL6NJ_T0090298.1 MGP_C57BL6NJ_G0034375.1 mouse_genomes_project 8 89122797 89135462 + Dnase2a protein_coding processed_transcript MGP_C57BL6NJ_T0009261.1 MGP_C57BL6NJ_G0007447.1 mouse_genomes_project 8 9920478 9920880 + Gm29175 lincRNA lincRNA MGP_C57BL6NJ_T0103562.1 MGP_C57BL6NJ_G0041354.1 mouse_genomes_project 8 20376650 20377476 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0011983.1 MGP_C57BL6NJ_G0010068.1 mouse_genomes_project 8 67375906 67375997 + Gm26210 misc_RNA misc_RNA MGP_C57BL6NJ_T0091118.1 MGP_C57BL6NJ_G0034661.1 mouse_genomes_project 8 124140808 124157810 + MGP_C57BL6NJ_P0091118 Atmin protein_coding protein_coding MGP_C57BL6NJ_T0090688.1 MGP_C57BL6NJ_G0034505.1 mouse_genomes_project 8 110499109 110561145 - MGP_C57BL6NJ_P0090688 Terb1 protein_coding protein_coding MGP_C57BL6NJ_T0090689.1 MGP_C57BL6NJ_G0034505.1 mouse_genomes_project 8 110499427 110561141 - MGP_C57BL6NJ_P0090689 Terb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090690.1 MGP_C57BL6NJ_G0034505.1 mouse_genomes_project 8 110499428 110561140 - MGP_C57BL6NJ_P0090690 Terb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0090691.1 MGP_C57BL6NJ_G0034505.1 mouse_genomes_project 8 110500968 110561168 - MGP_C57BL6NJ_P0090691 Terb1 protein_coding protein_coding MGP_C57BL6NJ_T0091145.1 MGP_C57BL6NJ_G0034673.1 mouse_genomes_project 8 126750446 126754825 + MGP_C57BL6NJ_P0091145 Hsbp1 protein_coding protein_coding MGP_C57BL6NJ_T0091266.1 MGP_C57BL6NJ_G0034706.1 mouse_genomes_project 8 129210038 129246203 - MGP_C57BL6NJ_P0091266 Fbxo31 protein_coding protein_coding MGP_C57BL6NJ_T0091267.1 MGP_C57BL6NJ_G0034706.1 mouse_genomes_project 8 129214597 129222985 - Fbxo31 protein_coding processed_transcript MGP_C57BL6NJ_T0091268.1 MGP_C57BL6NJ_G0034706.1 mouse_genomes_project 8 129216221 129223851 - Fbxo31 protein_coding retained_intron MGP_C57BL6NJ_T0091269.1 MGP_C57BL6NJ_G0034706.1 mouse_genomes_project 8 129228218 129246187 - MGP_C57BL6NJ_P0091269 Fbxo31 protein_coding protein_coding MGP_C57BL6NJ_T0009262.1 MGP_C57BL6NJ_G0007448.1 mouse_genomes_project 8 10380308 10394140 - Gm15348 lincRNA lincRNA MGP_C57BL6NJ_T0088550.1 MGP_C57BL6NJ_G0033817.1 mouse_genomes_project 8 1155804 1158814 + MGP_C57BL6NJ_P0088550 Cd209g protein_coding protein_coding MGP_C57BL6NJ_T0091547.1 MGP_C57BL6NJ_G0034787.1 mouse_genomes_project 8 134563296 134622109 - MGP_C57BL6NJ_P0091547 Tarbp1 protein_coding protein_coding MGP_C57BL6NJ_T0011232.1 MGP_C57BL6NJ_G0009317.1 mouse_genomes_project 8 73889758 73889821 - Mir7067 miRNA miRNA MGP_C57BL6NJ_T0101947.1 MGP_C57BL6NJ_G0039993.1 mouse_genomes_project 8 79465532 79465659 - Gm22544 snoRNA snoRNA MGP_C57BL6NJ_T0100684.1 MGP_C57BL6NJ_G0038730.1 mouse_genomes_project 8 136887332 136887439 + Gm26002 snRNA snRNA MGP_C57BL6NJ_T0089968.1 MGP_C57BL6NJ_G0034272.1 mouse_genomes_project 8 75434363 75442968 - MGP_C57BL6NJ_P0089968 Cib3 protein_coding protein_coding MGP_C57BL6NJ_T0002477.1 MGP_C57BL6NJ_G0002365.1 mouse_genomes_project 8 105544903 105546920 + TEC TEC MGP_C57BL6NJ_T0100659.1 MGP_C57BL6NJ_G0038705.1 mouse_genomes_project 8 82726158 82726265 - Gm22044 snRNA snRNA MGP_C57BL6NJ_T0091367.1 MGP_C57BL6NJ_G0034732.1 mouse_genomes_project 8 130691848 130789904 - MGP_C57BL6NJ_P0091367 protein_coding protein_coding MGP_C57BL6NJ_T0091368.1 MGP_C57BL6NJ_G0034732.1 mouse_genomes_project 8 130694448 130789904 - MGP_C57BL6NJ_P0091368 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091369.1 MGP_C57BL6NJ_G0034732.1 mouse_genomes_project 8 130694777 130728437 - MGP_C57BL6NJ_P0091369 protein_coding protein_coding MGP_C57BL6NJ_T0091370.1 MGP_C57BL6NJ_G0034732.1 mouse_genomes_project 8 130707535 130728606 - MGP_C57BL6NJ_P0091370 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091371.1 MGP_C57BL6NJ_G0034732.1 mouse_genomes_project 8 130718513 130789884 - protein_coding retained_intron MGP_C57BL6NJ_T0091546.1 MGP_C57BL6NJ_G0034786.1 mouse_genomes_project 8 134559150 134562079 + MGP_C57BL6NJ_P0091546 Coa6 protein_coding protein_coding MGP_C57BL6NJ_T0101959.1 MGP_C57BL6NJ_G0040005.1 mouse_genomes_project 8 101458848 101458980 - Gm22780 snoRNA snoRNA MGP_C57BL6NJ_T0011285.1 MGP_C57BL6NJ_G0009370.1 mouse_genomes_project 8 129685801 129685864 + Mir7237 miRNA miRNA MGP_C57BL6NJ_T0002480.1 MGP_C57BL6NJ_G0002368.1 mouse_genomes_project 8 115239567 115244775 + TEC TEC MGP_C57BL6NJ_T0088764.1 MGP_C57BL6NJ_G0033879.1 mouse_genomes_project 8 11491054 11515205 + MGP_C57BL6NJ_P0088764 Cdc16 protein_coding protein_coding MGP_C57BL6NJ_T0088765.1 MGP_C57BL6NJ_G0033879.1 mouse_genomes_project 8 11491055 11496386 + Cdc16 protein_coding processed_transcript MGP_C57BL6NJ_T0088766.1 MGP_C57BL6NJ_G0033879.1 mouse_genomes_project 8 11491093 11499866 + Cdc16 protein_coding processed_transcript MGP_C57BL6NJ_T0088767.1 MGP_C57BL6NJ_G0033879.1 mouse_genomes_project 8 11492145 11496389 + Cdc16 protein_coding retained_intron MGP_C57BL6NJ_T0088768.1 MGP_C57BL6NJ_G0033879.1 mouse_genomes_project 8 11512268 11515205 + Cdc16 protein_coding retained_intron MGP_C57BL6NJ_T0005549.1 MGP_C57BL6NJ_G0004697.1 mouse_genomes_project 8 117431471 117437141 + Gm15894 antisense antisense MGP_C57BL6NJ_T0011360.1 MGP_C57BL6NJ_G0009445.1 mouse_genomes_project 9 113856724 113856810 + Gm23156 miRNA miRNA MGP_C57BL6NJ_T0091732.1 MGP_C57BL6NJ_G0034848.1 mouse_genomes_project 9 12093466 12100697 - MGP_C57BL6NJ_P0091732 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091733.1 MGP_C57BL6NJ_G0034848.1 mouse_genomes_project 9 12093472 12110025 - MGP_C57BL6NJ_P0091733 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091734.1 MGP_C57BL6NJ_G0034848.1 mouse_genomes_project 9 12093474 12100653 - MGP_C57BL6NJ_P0091734 1700012B09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091735.1 MGP_C57BL6NJ_G0034848.1 mouse_genomes_project 9 12095065 12110042 - MGP_C57BL6NJ_P0091735 1700012B09Rik protein_coding protein_coding MGP_C57BL6NJ_T0091736.1 MGP_C57BL6NJ_G0034848.1 mouse_genomes_project 9 12095065 12110025 - MGP_C57BL6NJ_P0091736 1700012B09Rik protein_coding protein_coding MGP_C57BL6NJ_T0092500.1 MGP_C57BL6NJ_G0035182.1 mouse_genomes_project 9 43769625 43774846 + MGP_C57BL6NJ_P0092500 Thy1 protein_coding protein_coding MGP_C57BL6NJ_T0002571.1 MGP_C57BL6NJ_G0002458.1 mouse_genomes_project 9 105076515 105077572 + TEC TEC MGP_C57BL6NJ_T0092079.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25339902 25355724 - Acad8 protein_coding retained_intron MGP_C57BL6NJ_T0092080.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25339902 25364182 - MGP_C57BL6NJ_P0092080 Acad8 protein_coding protein_coding MGP_C57BL6NJ_T0092081.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25339911 25364165 - MGP_C57BL6NJ_P0092081 Acad8 protein_coding protein_coding MGP_C57BL6NJ_T0092082.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25341143 25343723 - Acad8 protein_coding retained_intron MGP_C57BL6NJ_T0092083.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25344966 25364124 - MGP_C57BL6NJ_P0092083 Acad8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092084.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25345027 25364122 - MGP_C57BL6NJ_P0092084 Acad8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092085.1 MGP_C57BL6NJ_G0034993.1 mouse_genomes_project 9 25355693 25364121 - Acad8 protein_coding retained_intron MGP_C57BL6NJ_T0092869.1 MGP_C57BL6NJ_G0035289.1 mouse_genomes_project 9 51392579 51415901 - MGP_C57BL6NJ_P0092869 4833427G06Rik protein_coding protein_coding MGP_C57BL6NJ_T0092764.1 MGP_C57BL6NJ_G0035261.1 mouse_genomes_project 9 49226893 49255218 + MGP_C57BL6NJ_P0092764 Zw10 protein_coding protein_coding MGP_C57BL6NJ_T0099174.1 MGP_C57BL6NJ_G0037238.1 mouse_genomes_project 9 34426647 34426755 - Gm24188 rRNA rRNA MGP_C57BL6NJ_T0100708.1 MGP_C57BL6NJ_G0038754.1 mouse_genomes_project 9 50041668 50041775 - Gm25633 snRNA snRNA MGP_C57BL6NJ_T0011347.1 MGP_C57BL6NJ_G0009432.1 mouse_genomes_project 9 95922651 95922755 - Mir6386 miRNA miRNA MGP_C57BL6NJ_T0092018.1 MGP_C57BL6NJ_G0034969.1 mouse_genomes_project 9 20192466 20197601 - MGP_C57BL6NJ_P0092018 Acp5 protein_coding protein_coding MGP_C57BL6NJ_T0092019.1 MGP_C57BL6NJ_G0034969.1 mouse_genomes_project 9 20192466 20201429 - MGP_C57BL6NJ_P0092019 Acp5 protein_coding protein_coding MGP_C57BL6NJ_T0092020.1 MGP_C57BL6NJ_G0034969.1 mouse_genomes_project 9 20192466 20196334 - MGP_C57BL6NJ_P0092020 Acp5 protein_coding protein_coding MGP_C57BL6NJ_T0095090.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113465043 113476133 + MGP_C57BL6NJ_P0095090 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095091.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113465281 113476771 + MGP_C57BL6NJ_P0095091 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095092.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113465286 113476751 + MGP_C57BL6NJ_P0095092 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095093.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113465286 113476751 + MGP_C57BL6NJ_P0095093 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095094.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113465297 113476751 + MGP_C57BL6NJ_P0095094 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095095.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113467134 113469364 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095096.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113467908 113468674 + MGP_C57BL6NJ_P0095096 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095097.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113468781 113469634 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095098.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113468810 113469895 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095099.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113469071 113476133 + MGP_C57BL6NJ_P0095099 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095100.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113469970 113470897 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095101.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113470780 113472991 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095102.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113471422 113473153 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095103.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113471522 113473631 + MGP_C57BL6NJ_P0095103 Usp19 protein_coding protein_coding MGP_C57BL6NJ_T0095104.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113473136 113474054 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0095105.1 MGP_C57BL6NJ_G0035794.1 mouse_genomes_project 9 113474583 113476131 + Usp19 protein_coding retained_intron MGP_C57BL6NJ_T0016632.1 MGP_C57BL6NJ_G0014677.1 mouse_genomes_project 9 116406638 116406991 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016514.1 MGP_C57BL6NJ_G0014559.1 mouse_genomes_project 9 60081325 60081859 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005585.1 MGP_C57BL6NJ_G0004726.1 mouse_genomes_project 9 27585555 27595956 + Gm15520 antisense antisense MGP_C57BL6NJ_T0093727.1 MGP_C57BL6NJ_G0035522.1 mouse_genomes_project 9 76319135 76354346 + Wdr72 protein_coding processed_transcript MGP_C57BL6NJ_T0093728.1 MGP_C57BL6NJ_G0035522.1 mouse_genomes_project 9 76319135 76498992 + MGP_C57BL6NJ_P0093728 Wdr72 protein_coding protein_coding MGP_C57BL6NJ_T0093729.1 MGP_C57BL6NJ_G0035522.1 mouse_genomes_project 9 76319183 76323635 + Wdr72 protein_coding processed_transcript MGP_C57BL6NJ_T0093730.1 MGP_C57BL6NJ_G0035522.1 mouse_genomes_project 9 76343921 76497512 + MGP_C57BL6NJ_P0093730 Wdr72 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093731.1 MGP_C57BL6NJ_G0035522.1 mouse_genomes_project 9 76488168 76499097 + Wdr72 protein_coding processed_transcript MGP_C57BL6NJ_T0091743.1 MGP_C57BL6NJ_G0034851.1 mouse_genomes_project 9 12205440 12216020 + MGP_C57BL6NJ_P0091743 Gpr83 protein_coding protein_coding MGP_C57BL6NJ_T0091744.1 MGP_C57BL6NJ_G0034851.1 mouse_genomes_project 9 12205484 12215541 + MGP_C57BL6NJ_P0091744 Gpr83 protein_coding protein_coding MGP_C57BL6NJ_T0091745.1 MGP_C57BL6NJ_G0034851.1 mouse_genomes_project 9 12210570 12216020 + Gpr83 protein_coding retained_intron MGP_C57BL6NJ_T0094253.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100864742 100932248 - MGP_C57BL6NJ_P0094253 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094254.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100864750 100932264 - MGP_C57BL6NJ_P0094254 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094255.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100864750 100932309 - MGP_C57BL6NJ_P0094255 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094256.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100864992 100932268 - MGP_C57BL6NJ_P0094256 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094257.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100866822 100932263 - MGP_C57BL6NJ_P0094257 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094258.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100866993 100904312 - MGP_C57BL6NJ_P0094258 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094259.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100880488 100896336 - Pxylp1 protein_coding processed_transcript MGP_C57BL6NJ_T0094260.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100880598 100935504 - MGP_C57BL6NJ_P0094260 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094261.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100881287 100932255 - Pxylp1 protein_coding retained_intron MGP_C57BL6NJ_T0094262.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100881404 100904389 - MGP_C57BL6NJ_P0094262 Pxylp1 protein_coding protein_coding MGP_C57BL6NJ_T0094263.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100897881 100904391 - Pxylp1 protein_coding processed_transcript MGP_C57BL6NJ_T0094264.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100902211 100934925 - Pxylp1 protein_coding processed_transcript MGP_C57BL6NJ_T0094265.1 MGP_C57BL6NJ_G0035641.1 mouse_genomes_project 9 100930465 100932268 - Pxylp1 protein_coding retained_intron MGP_C57BL6NJ_T0005640.1 MGP_C57BL6NJ_G0004764.1 mouse_genomes_project 9 78728933 78730203 + Gm27234 antisense antisense MGP_C57BL6NJ_T0093988.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636546 89739757 + MGP_C57BL6NJ_P0093988 Dopey1 protein_coding protein_coding MGP_C57BL6NJ_T0093989.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636562 89691320 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093990.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636565 89738155 + MGP_C57BL6NJ_P0093990 Dopey1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093991.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636571 89681698 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093992.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636603 89682822 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093993.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636603 89696060 + MGP_C57BL6NJ_P0093993 Dopey1 protein_coding protein_coding MGP_C57BL6NJ_T0093994.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89636606 89739638 + MGP_C57BL6NJ_P0093994 Dopey1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093995.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89654813 89739640 + MGP_C57BL6NJ_P0093995 Dopey1 protein_coding protein_coding MGP_C57BL6NJ_T0093996.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89663255 89666061 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093997.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89665589 89668491 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093998.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89675554 89679525 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0093999.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89682168 89690596 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0094000.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89682460 89699430 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0094001.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89704211 89708156 + MGP_C57BL6NJ_P0094001 Dopey1 protein_coding protein_coding MGP_C57BL6NJ_T0094002.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89706562 89729093 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0094003.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89714397 89738459 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0094004.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89715823 89738464 + MGP_C57BL6NJ_P0094004 Dopey1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094005.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89725423 89731720 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0094006.1 MGP_C57BL6NJ_G0035588.1 mouse_genomes_project 9 89732219 89738464 + Dopey1 protein_coding retained_intron MGP_C57BL6NJ_T0091821.1 MGP_C57BL6NJ_G0034887.1 mouse_genomes_project 9 17157238 17158177 + MGP_C57BL6NJ_P0091821 Olfr849 protein_coding protein_coding MGP_C57BL6NJ_T0092748.1 MGP_C57BL6NJ_G0035251.1 mouse_genomes_project 9 48457593 48507613 + MGP_C57BL6NJ_P0092748 Nxpe4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0012000.1 MGP_C57BL6NJ_G0010085.1 mouse_genomes_project 9 42136825 42136884 - Gm24420 misc_RNA misc_RNA MGP_C57BL6NJ_T0092333.1 MGP_C57BL6NJ_G0035079.1 mouse_genomes_project 9 37327573 37328518 + MGP_C57BL6NJ_P0092333 Olfr890 protein_coding protein_coding MGP_C57BL6NJ_T0092408.1 MGP_C57BL6NJ_G0035142.1 mouse_genomes_project 9 39200687 39201623 + MGP_C57BL6NJ_P0092408 Olfr970 protein_coding protein_coding MGP_C57BL6NJ_T0016639.1 MGP_C57BL6NJ_G0014684.1 mouse_genomes_project 9 127540994 127541342 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093889.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811082 82843214 + Senp6 protein_coding retained_intron MGP_C57BL6NJ_T0093890.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811082 82895408 + MGP_C57BL6NJ_P0093890 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093891.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811115 82863257 + MGP_C57BL6NJ_P0093891 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093892.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811278 82895236 + MGP_C57BL6NJ_P0093892 Senp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093893.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811703 82894317 + MGP_C57BL6NJ_P0093893 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093894.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82811996 82836228 + Senp6 protein_coding processed_transcript MGP_C57BL6NJ_T0093895.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82841032 82870860 + MGP_C57BL6NJ_P0093895 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093896.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82851901 82894167 + MGP_C57BL6NJ_P0093896 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093897.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82863525 82868251 + MGP_C57BL6NJ_P0093897 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093898.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82863542 82870932 + Senp6 protein_coding processed_transcript MGP_C57BL6NJ_T0093899.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82872677 82885402 + MGP_C57BL6NJ_P0093899 Senp6 protein_coding protein_coding MGP_C57BL6NJ_T0093900.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82885202 82894626 + Senp6 protein_coding retained_intron MGP_C57BL6NJ_T0093901.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82887854 82894164 + Senp6 protein_coding retained_intron MGP_C57BL6NJ_T0093902.1 MGP_C57BL6NJ_G0035570.1 mouse_genomes_project 9 82892499 82894460 + Senp6 protein_coding retained_intron MGP_C57BL6NJ_T0093217.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61633430 61759413 - MGP_C57BL6NJ_P0093217 Lrrc49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093218.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61653123 61758729 - MGP_C57BL6NJ_P0093218 Lrrc49 protein_coding protein_coding MGP_C57BL6NJ_T0093219.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61653125 61759447 - MGP_C57BL6NJ_P0093219 Lrrc49 protein_coding protein_coding MGP_C57BL6NJ_T0093220.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61653125 61759407 - MGP_C57BL6NJ_P0093220 Lrrc49 protein_coding protein_coding MGP_C57BL6NJ_T0093221.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61653135 61758823 - MGP_C57BL6NJ_P0093221 Lrrc49 protein_coding protein_coding MGP_C57BL6NJ_T0093222.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61653718 61664396 - Lrrc49 protein_coding retained_intron MGP_C57BL6NJ_T0093223.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61675522 61759192 - Lrrc49 protein_coding retained_intron MGP_C57BL6NJ_T0093224.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61676076 61720535 - Lrrc49 protein_coding processed_transcript MGP_C57BL6NJ_T0093225.1 MGP_C57BL6NJ_G0035402.1 mouse_genomes_project 9 61750694 61758961 - MGP_C57BL6NJ_P0093225 Lrrc49 protein_coding protein_coding MGP_C57BL6NJ_T0092077.1 MGP_C57BL6NJ_G0034991.1 mouse_genomes_project 9 25166732 25212199 - MGP_C57BL6NJ_P0092077 Glb1l3 protein_coding protein_coding MGP_C57BL6NJ_T0009540.1 MGP_C57BL6NJ_G0007660.1 mouse_genomes_project 9 124114305 124135061 + Gm17399 lincRNA lincRNA MGP_C57BL6NJ_T0002590.1 MGP_C57BL6NJ_G0002477.1 mouse_genomes_project 9 108615219 108617391 - TEC TEC MGP_C57BL6NJ_T0102021.1 MGP_C57BL6NJ_G0040067.1 mouse_genomes_project 9 72419432 72419545 + Gm24615 snoRNA snoRNA MGP_C57BL6NJ_T0091837.1 MGP_C57BL6NJ_G0034903.1 mouse_genomes_project 9 18089482 18113279 + MGP_C57BL6NJ_P0091837 Olfr872 protein_coding protein_coding MGP_C57BL6NJ_T0016494.1 MGP_C57BL6NJ_G0014539.1 mouse_genomes_project 9 29940874 29941921 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094359.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104815872 104844575 - MGP_C57BL6NJ_P0094359 Il20rb protein_coding protein_coding MGP_C57BL6NJ_T0094360.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104815874 104824984 - Il20rb protein_coding retained_intron MGP_C57BL6NJ_T0094361.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104815957 104819917 - Il20rb protein_coding processed_transcript MGP_C57BL6NJ_T0094362.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104816683 104819889 - Il20rb protein_coding retained_intron MGP_C57BL6NJ_T0094363.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104817230 104828656 - Il20rb protein_coding processed_transcript MGP_C57BL6NJ_T0094364.1 MGP_C57BL6NJ_G0035670.1 mouse_genomes_project 9 104823816 104844172 - Il20rb protein_coding retained_intron MGP_C57BL6NJ_T0093457.1 MGP_C57BL6NJ_G0035468.1 mouse_genomes_project 9 68166203 68172333 - MGP_C57BL6NJ_P0093457 Fbxl22 protein_coding protein_coding MGP_C57BL6NJ_T0094353.1 MGP_C57BL6NJ_G0035668.1 mouse_genomes_project 9 103965124 103991308 - MGP_C57BL6NJ_P0094353 Cldn18 protein_coding protein_coding MGP_C57BL6NJ_T0094354.1 MGP_C57BL6NJ_G0035668.1 mouse_genomes_project 9 103967483 103998512 - MGP_C57BL6NJ_P0094354 Cldn18 protein_coding protein_coding MGP_C57BL6NJ_T0094355.1 MGP_C57BL6NJ_G0035668.1 mouse_genomes_project 9 103967845 103991254 - MGP_C57BL6NJ_P0094355 Cldn18 protein_coding protein_coding MGP_C57BL6NJ_T0094356.1 MGP_C57BL6NJ_G0035668.1 mouse_genomes_project 9 103968385 103998512 - MGP_C57BL6NJ_P0094356 Cldn18 protein_coding protein_coding MGP_C57BL6NJ_T0094503.1 MGP_C57BL6NJ_G0035699.1 mouse_genomes_project 9 108659359 108679551 - Ackr4 protein_coding processed_transcript MGP_C57BL6NJ_T0094506.1 MGP_C57BL6NJ_G0035699.1 mouse_genomes_project 9 108675131 108708109 - MGP_C57BL6NJ_P0094506 Ackr4 protein_coding protein_coding MGP_C57BL6NJ_T0094507.1 MGP_C57BL6NJ_G0035699.1 mouse_genomes_project 9 108675262 108680010 - MGP_C57BL6NJ_P0094507 Ackr4 protein_coding protein_coding MGP_C57BL6NJ_T0092758.1 MGP_C57BL6NJ_G0035257.1 mouse_genomes_project 9 48800435 48986093 - MGP_C57BL6NJ_P0092758 Zbtb16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091826.1 MGP_C57BL6NJ_G0034892.1 mouse_genomes_project 9 17328954 17329946 + MGP_C57BL6NJ_P0091826 Olfr855 protein_coding protein_coding MGP_C57BL6NJ_T0092936.1 MGP_C57BL6NJ_G0035319.1 mouse_genomes_project 9 55162346 55222829 - MGP_C57BL6NJ_P0092936 Acsbg1 protein_coding protein_coding MGP_C57BL6NJ_T0092937.1 MGP_C57BL6NJ_G0035319.1 mouse_genomes_project 9 55186023 55204108 - MGP_C57BL6NJ_P0092937 Acsbg1 protein_coding protein_coding MGP_C57BL6NJ_T0092938.1 MGP_C57BL6NJ_G0035319.1 mouse_genomes_project 9 55186049 55208296 - MGP_C57BL6NJ_P0092938 Acsbg1 protein_coding protein_coding MGP_C57BL6NJ_T0092939.1 MGP_C57BL6NJ_G0035319.1 mouse_genomes_project 9 55186069 55222654 - MGP_C57BL6NJ_P0092939 Acsbg1 protein_coding protein_coding MGP_C57BL6NJ_T0092940.1 MGP_C57BL6NJ_G0035319.1 mouse_genomes_project 9 55207132 55208167 - Acsbg1 protein_coding retained_intron MGP_C57BL6NJ_T0095794.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085567 128115516 + MGP_C57BL6NJ_P0095794 Nktr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095795.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085574 128129641 + MGP_C57BL6NJ_P0095795 Nktr protein_coding protein_coding MGP_C57BL6NJ_T0095796.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085576 128115434 + MGP_C57BL6NJ_P0095796 Nktr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095797.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085613 128113950 + MGP_C57BL6NJ_P0095797 Nktr protein_coding protein_coding MGP_C57BL6NJ_T0095798.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085615 128102810 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0095799.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128085641 128108248 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0095800.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128091167 128120991 + MGP_C57BL6NJ_P0095800 Nktr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095801.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128091201 128122638 + MGP_C57BL6NJ_P0095801 Nktr protein_coding protein_coding MGP_C57BL6NJ_T0095802.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128091584 128104312 + MGP_C57BL6NJ_P0095802 Nktr protein_coding protein_coding MGP_C57BL6NJ_T0095803.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128102194 128104380 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0095804.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128103943 128115470 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0095805.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128123583 128127194 + MGP_C57BL6NJ_P0095805 Nktr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095806.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128124012 128125445 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0095807.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128124464 128127655 + MGP_C57BL6NJ_P0095807 Nktr protein_coding protein_coding MGP_C57BL6NJ_T0095808.1 MGP_C57BL6NJ_G0035947.1 mouse_genomes_project 9 128125324 128127154 + Nktr protein_coding retained_intron MGP_C57BL6NJ_T0100710.1 MGP_C57BL6NJ_G0038756.1 mouse_genomes_project 9 53189216 53189334 + Gm22242 snRNA snRNA MGP_C57BL6NJ_T0093072.1 MGP_C57BL6NJ_G0035362.1 mouse_genomes_project 9 58360078 58389463 + MGP_C57BL6NJ_P0093072 Scamp2 protein_coding protein_coding MGP_C57BL6NJ_T0100691.1 MGP_C57BL6NJ_G0038737.1 mouse_genomes_project 9 18033159 18033312 + Gm25914 snRNA snRNA MGP_C57BL6NJ_T0095711.1 MGP_C57BL6NJ_G0035919.1 mouse_genomes_project 9 125508026 125540325 + MGP_C57BL6NJ_P0095711 Acvr2b protein_coding protein_coding MGP_C57BL6NJ_T0095712.1 MGP_C57BL6NJ_G0035919.1 mouse_genomes_project 9 125508083 125540325 + MGP_C57BL6NJ_P0095712 Acvr2b protein_coding protein_coding MGP_C57BL6NJ_T0095713.1 MGP_C57BL6NJ_G0035919.1 mouse_genomes_project 9 125508128 125540285 + MGP_C57BL6NJ_P0095713 Acvr2b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094468.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107836223 107884840 + MGP_C57BL6NJ_P0094468 Topbp1 protein_coding protein_coding MGP_C57BL6NJ_T0094469.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107836239 107837007 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094470.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107836511 107842542 + MGP_C57BL6NJ_P0094470 Topbp1 protein_coding protein_coding MGP_C57BL6NJ_T0094471.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107858785 107867880 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094472.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107858811 107860617 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094473.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107863695 107874774 + MGP_C57BL6NJ_P0094473 Topbp1 protein_coding protein_coding MGP_C57BL6NJ_T0094474.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107876366 107879460 + MGP_C57BL6NJ_P0094474 Topbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094475.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107876668 107877419 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094476.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107878339 107879821 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094477.1 MGP_C57BL6NJ_G0035691.1 mouse_genomes_project 9 107878960 107884313 + Topbp1 protein_coding retained_intron MGP_C57BL6NJ_T0094443.1 MGP_C57BL6NJ_G0035685.1 mouse_genomes_project 9 107494324 107526844 + Slco2a1 protein_coding processed_transcript MGP_C57BL6NJ_T0094444.1 MGP_C57BL6NJ_G0035685.1 mouse_genomes_project 9 107514092 107601642 + MGP_C57BL6NJ_P0094444 Slco2a1 protein_coding protein_coding MGP_C57BL6NJ_T0094445.1 MGP_C57BL6NJ_G0035685.1 mouse_genomes_project 9 107514244 107517976 + Slco2a1 protein_coding retained_intron MGP_C57BL6NJ_T0094446.1 MGP_C57BL6NJ_G0035685.1 mouse_genomes_project 9 107514589 107609556 + MGP_C57BL6NJ_P0094446 Slco2a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092378.1 MGP_C57BL6NJ_G0035118.1 mouse_genomes_project 9 38364343 38365462 - MGP_C57BL6NJ_P0092378 Olfr938 protein_coding protein_coding MGP_C57BL6NJ_T0095873.1 MGP_C57BL6NJ_G0035972.1 mouse_genomes_project 9 129626151 129649066 + MGP_C57BL6NJ_P0095873 Exosc7 protein_coding protein_coding MGP_C57BL6NJ_T0095874.1 MGP_C57BL6NJ_G0035972.1 mouse_genomes_project 9 129626194 129632721 + Exosc7 protein_coding retained_intron MGP_C57BL6NJ_T0095875.1 MGP_C57BL6NJ_G0035972.1 mouse_genomes_project 9 129639321 129643865 + Exosc7 protein_coding processed_transcript MGP_C57BL6NJ_T0092791.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50881191 50895963 - MGP_C57BL6NJ_P0092791 AU019823 protein_coding protein_coding MGP_C57BL6NJ_T0092792.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50881195 50895963 - MGP_C57BL6NJ_P0092792 AU019823 protein_coding protein_coding MGP_C57BL6NJ_T0092793.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50881437 50895415 - MGP_C57BL6NJ_P0092793 AU019823 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092794.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50883846 50895766 - MGP_C57BL6NJ_P0092794 AU019823 protein_coding protein_coding MGP_C57BL6NJ_T0092795.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50883955 50895780 - MGP_C57BL6NJ_P0092795 AU019823 protein_coding protein_coding MGP_C57BL6NJ_T0092796.1 MGP_C57BL6NJ_G0035276.1 mouse_genomes_project 9 50883988 50895763 - MGP_C57BL6NJ_P0092796 AU019823 protein_coding protein_coding MGP_C57BL6NJ_T0092749.1 MGP_C57BL6NJ_G0035252.1 mouse_genomes_project 9 48544141 48557455 + MGP_C57BL6NJ_P0092749 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0011322.1 MGP_C57BL6NJ_G0009407.1 mouse_genomes_project 9 45098733 45098798 - Mir7086 miRNA miRNA MGP_C57BL6NJ_T0094539.1 MGP_C57BL6NJ_G0035704.1 mouse_genomes_project 9 109797935 109800345 - MGP_C57BL6NJ_P0094539 Nudt16 protein_coding protein_coding MGP_C57BL6NJ_T0094540.1 MGP_C57BL6NJ_G0035704.1 mouse_genomes_project 9 109798364 109800838 - MGP_C57BL6NJ_P0094540 Nudt16 protein_coding protein_coding MGP_C57BL6NJ_T0094541.1 MGP_C57BL6NJ_G0035704.1 mouse_genomes_project 9 109798705 109800813 - Nudt16 protein_coding retained_intron MGP_C57BL6NJ_T0094542.1 MGP_C57BL6NJ_G0035704.1 mouse_genomes_project 9 109798705 109800813 - Nudt16 protein_coding retained_intron MGP_C57BL6NJ_T0094543.1 MGP_C57BL6NJ_G0035704.1 mouse_genomes_project 9 109799239 109800806 - MGP_C57BL6NJ_P0094543 Nudt16 protein_coding protein_coding MGP_C57BL6NJ_T0009473.1 MGP_C57BL6NJ_G0007612.1 mouse_genomes_project 9 84283813 84289617 + Gm27226 lincRNA lincRNA MGP_C57BL6NJ_T0019039.1 MGP_C57BL6NJ_G0016148.1 mouse_genomes_project 9 102731651 102733015 - 4930579K19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0019040.1 MGP_C57BL6NJ_G0016148.1 mouse_genomes_project 9 102731882 102733034 - 4930579K19Rik processed_transcript TEC MGP_C57BL6NJ_T0019041.1 MGP_C57BL6NJ_G0016148.1 mouse_genomes_project 9 102732382 102733034 - 4930579K19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0095630.1 MGP_C57BL6NJ_G0035897.1 mouse_genomes_project 9 120964500 121036914 - MGP_C57BL6NJ_P0095630 Stt3b protein_coding protein_coding MGP_C57BL6NJ_T0092718.1 MGP_C57BL6NJ_G0035244.1 mouse_genomes_project 9 46180411 46183698 + MGP_C57BL6NJ_P0092718 Apoa5 protein_coding protein_coding MGP_C57BL6NJ_T0092719.1 MGP_C57BL6NJ_G0035244.1 mouse_genomes_project 9 46180856 46183698 + MGP_C57BL6NJ_P0092719 Apoa5 protein_coding protein_coding MGP_C57BL6NJ_T0016504.1 MGP_C57BL6NJ_G0014549.1 mouse_genomes_project 9 36840479 36843256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093175.1 MGP_C57BL6NJ_G0035392.1 mouse_genomes_project 9 60498220 60504905 - MGP_C57BL6NJ_P0093175 Tmem202 protein_coding protein_coding MGP_C57BL6NJ_T0092355.1 MGP_C57BL6NJ_G0035101.1 mouse_genomes_project 9 37933702 37934632 - MGP_C57BL6NJ_P0092355 Olfr917 protein_coding protein_coding MGP_C57BL6NJ_T0094926.1 MGP_C57BL6NJ_G0035766.1 mouse_genomes_project 9 112816292 112820285 + MGP_C57BL6NJ_P0094926 Actl11 protein_coding protein_coding MGP_C57BL6NJ_T0101992.1 MGP_C57BL6NJ_G0040038.1 mouse_genomes_project 9 22589771 22589866 + Gm22380 snoRNA snoRNA MGP_C57BL6NJ_T0091833.1 MGP_C57BL6NJ_G0034899.1 mouse_genomes_project 9 17870476 17871553 - MGP_C57BL6NJ_P0091833 Olfr866 protein_coding protein_coding MGP_C57BL6NJ_T0094021.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89981216 90103603 - MGP_C57BL6NJ_P0094021 Snap91 protein_coding protein_coding MGP_C57BL6NJ_T0094022.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89981226 90024834 - Snap91 protein_coding retained_intron MGP_C57BL6NJ_T0094023.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89981229 90103613 - MGP_C57BL6NJ_P0094023 Snap91 protein_coding protein_coding MGP_C57BL6NJ_T0094024.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89981229 90103613 - MGP_C57BL6NJ_P0094024 Snap91 protein_coding protein_coding MGP_C57BL6NJ_T0094025.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89981971 90103578 - MGP_C57BL6NJ_P0094025 Snap91 protein_coding protein_coding MGP_C57BL6NJ_T0094026.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 89990765 90014792 - Snap91 protein_coding retained_intron MGP_C57BL6NJ_T0094027.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 90008690 90014966 - Snap91 protein_coding retained_intron MGP_C57BL6NJ_T0094028.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 90022577 90047841 - Snap91 protein_coding processed_transcript MGP_C57BL6NJ_T0094029.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 90038980 90103818 - Snap91 protein_coding retained_intron MGP_C57BL6NJ_T0094030.1 MGP_C57BL6NJ_G0035593.1 mouse_genomes_project 9 90053626 90103561 - MGP_C57BL6NJ_P0094030 Snap91 protein_coding protein_coding MGP_C57BL6NJ_T0091843.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18282944 18318723 - MGP_C57BL6NJ_P0091843 Zfp26 protein_coding protein_coding MGP_C57BL6NJ_T0091844.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18285002 18318520 - Zfp26 protein_coding retained_intron MGP_C57BL6NJ_T0091845.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18287034 18318552 - Zfp26 protein_coding retained_intron MGP_C57BL6NJ_T0091846.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18288271 18292976 - Zfp26 protein_coding processed_transcript MGP_C57BL6NJ_T0091847.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18293629 18318725 - Zfp26 protein_coding retained_intron MGP_C57BL6NJ_T0091848.1 MGP_C57BL6NJ_G0034908.1 mouse_genomes_project 9 18295918 18318390 - MGP_C57BL6NJ_P0091848 Zfp26 protein_coding protein_coding MGP_C57BL6NJ_T0094689.1 MGP_C57BL6NJ_G0035729.1 mouse_genomes_project 9 111294790 111297068 + MGP_C57BL6NJ_P0094689 Iqcf1 protein_coding protein_coding MGP_C57BL6NJ_T0094690.1 MGP_C57BL6NJ_G0035729.1 mouse_genomes_project 9 111294815 111297073 + MGP_C57BL6NJ_P0094690 Iqcf1 protein_coding protein_coding MGP_C57BL6NJ_T0005609.1 MGP_C57BL6NJ_G0004743.1 mouse_genomes_project 9 54185425 54200137 + Gm16124 antisense antisense MGP_C57BL6NJ_T0091999.1 MGP_C57BL6NJ_G0034959.1 mouse_genomes_project 9 19984745 19988767 + MGP_C57BL6NJ_P0091999 Swsap1 protein_coding protein_coding MGP_C57BL6NJ_T0095598.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119510446 119576201 - MGP_C57BL6NJ_P0095598 Fbxl2 protein_coding protein_coding MGP_C57BL6NJ_T0095599.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119523514 119576233 - MGP_C57BL6NJ_P0095599 Fbxl2 protein_coding protein_coding MGP_C57BL6NJ_T0095600.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119524844 119576198 - MGP_C57BL6NJ_P0095600 Fbxl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095601.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119530146 119538180 - Fbxl2 protein_coding retained_intron MGP_C57BL6NJ_T0095602.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119536052 119576246 - Fbxl2 protein_coding retained_intron MGP_C57BL6NJ_T0095603.1 MGP_C57BL6NJ_G0035879.1 mouse_genomes_project 9 119552726 119597554 - Fbxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0093065.1 MGP_C57BL6NJ_G0035359.1 mouse_genomes_project 9 58316974 58330006 + MGP_C57BL6NJ_P0093065 Cox5a protein_coding protein_coding MGP_C57BL6NJ_T0100705.1 MGP_C57BL6NJ_G0038751.1 mouse_genomes_project 9 45761462 45761561 - Gm24646 snRNA snRNA MGP_C57BL6NJ_T0002588.1 MGP_C57BL6NJ_G0002475.1 mouse_genomes_project 9 108093293 108095525 - TEC TEC MGP_C57BL6NJ_T0095915.1 MGP_C57BL6NJ_G0035988.1 mouse_genomes_project 9 130590726 130605676 + MGP_C57BL6NJ_P0095915 Ccr3 protein_coding protein_coding MGP_C57BL6NJ_T0011335.1 MGP_C57BL6NJ_G0009420.1 mouse_genomes_project 9 66169028 66169135 - miRNA miRNA MGP_C57BL6NJ_T0092901.1 MGP_C57BL6NJ_G0035305.1 mouse_genomes_project 9 54089521 54122421 - MGP_C57BL6NJ_P0092901 Acat1 protein_coding protein_coding MGP_C57BL6NJ_T0092902.1 MGP_C57BL6NJ_G0035305.1 mouse_genomes_project 9 54091486 54092757 - Acat1 protein_coding processed_transcript MGP_C57BL6NJ_T0092903.1 MGP_C57BL6NJ_G0035305.1 mouse_genomes_project 9 54106611 54122369 - Acat1 protein_coding retained_intron MGP_C57BL6NJ_T0092720.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46184947 46193412 + MGP_C57BL6NJ_P0092720 Zpr1 protein_coding protein_coding MGP_C57BL6NJ_T0092721.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46184975 46193295 + MGP_C57BL6NJ_P0092721 Zpr1 protein_coding protein_coding MGP_C57BL6NJ_T0092722.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46185067 46187568 + MGP_C57BL6NJ_P0092722 Zpr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092723.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46185410 46188516 + Zpr1 protein_coding retained_intron MGP_C57BL6NJ_T0092724.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46187235 46188388 + Zpr1 protein_coding retained_intron MGP_C57BL6NJ_T0092725.1 MGP_C57BL6NJ_G0035245.1 mouse_genomes_project 9 46187912 46189435 + Zpr1 protein_coding retained_intron MGP_C57BL6NJ_T0092498.1 MGP_C57BL6NJ_G0035180.1 mouse_genomes_project 9 43439225 43507024 + MGP_C57BL6NJ_P0092498 Nectin1 protein_coding protein_coding MGP_C57BL6NJ_T0091891.1 MGP_C57BL6NJ_G0034918.1 mouse_genomes_project 9 18754231 18759873 + MGP_C57BL6NJ_P0091891 A230050P20Rik protein_coding protein_coding MGP_C57BL6NJ_T0091892.1 MGP_C57BL6NJ_G0034918.1 mouse_genomes_project 9 18754247 18759873 + A230050P20Rik protein_coding retained_intron MGP_C57BL6NJ_T0091893.1 MGP_C57BL6NJ_G0034918.1 mouse_genomes_project 9 18754269 18755685 + A230050P20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0091894.1 MGP_C57BL6NJ_G0034918.1 mouse_genomes_project 9 18754866 18759361 + A230050P20Rik protein_coding retained_intron MGP_C57BL6NJ_T0091895.1 MGP_C57BL6NJ_G0034918.1 mouse_genomes_project 9 18756361 18758711 + A230050P20Rik protein_coding retained_intron MGP_C57BL6NJ_T0095714.1 MGP_C57BL6NJ_G0035920.1 mouse_genomes_project 9 125551757 125578388 + MGP_C57BL6NJ_P0095714 Exog protein_coding protein_coding MGP_C57BL6NJ_T0095715.1 MGP_C57BL6NJ_G0035920.1 mouse_genomes_project 9 125551785 125577101 + MGP_C57BL6NJ_P0095715 Exog protein_coding protein_coding MGP_C57BL6NJ_T0002596.1 MGP_C57BL6NJ_G0002483.1 mouse_genomes_project 9 110831259 110834239 + TEC TEC MGP_C57BL6NJ_T0002526.1 MGP_C57BL6NJ_G0002414.1 mouse_genomes_project 9 75268824 75271057 + TEC TEC MGP_C57BL6NJ_T0016513.1 MGP_C57BL6NJ_G0014558.1 mouse_genomes_project 9 59618208 59618376 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092404.1 MGP_C57BL6NJ_G0035138.1 mouse_genomes_project 9 39116235 39117174 + MGP_C57BL6NJ_P0092404 Olfr150 protein_coding protein_coding MGP_C57BL6NJ_T0092123.1 MGP_C57BL6NJ_G0035007.1 mouse_genomes_project 9 29796831 29863015 - MGP_C57BL6NJ_P0092123 Aplp2 protein_coding protein_coding MGP_C57BL6NJ_T0092124.1 MGP_C57BL6NJ_G0035007.1 mouse_genomes_project 9 29796831 29863015 - MGP_C57BL6NJ_P0092124 Aplp2 protein_coding protein_coding MGP_C57BL6NJ_T0002608.1 MGP_C57BL6NJ_G0002495.1 mouse_genomes_project 9 115170121 115171061 + TEC TEC MGP_C57BL6NJ_T0093886.1 MGP_C57BL6NJ_G0035569.1 mouse_genomes_project 9 82547986 82712549 - MGP_C57BL6NJ_P0093886 Filip1 protein_coding protein_coding MGP_C57BL6NJ_T0093887.1 MGP_C57BL6NJ_G0035569.1 mouse_genomes_project 9 82547992 82563630 - Filip1 protein_coding processed_transcript MGP_C57BL6NJ_T0093888.1 MGP_C57BL6NJ_G0035569.1 mouse_genomes_project 9 82553596 82696900 - MGP_C57BL6NJ_P0093888 Filip1 protein_coding protein_coding MGP_C57BL6NJ_T0095477.1 MGP_C57BL6NJ_G0035858.1 mouse_genomes_project 9 116126715 116141731 + MGP_C57BL6NJ_P0095477 Prss46 protein_coding protein_coding MGP_C57BL6NJ_T0095478.1 MGP_C57BL6NJ_G0035858.1 mouse_genomes_project 9 116131626 116141725 + MGP_C57BL6NJ_P0095478 Prss46 protein_coding protein_coding MGP_C57BL6NJ_T0095844.1 MGP_C57BL6NJ_G0035962.1 mouse_genomes_project 9 129264916 129310351 + MGP_C57BL6NJ_P0095844 Tcaim protein_coding protein_coding MGP_C57BL6NJ_T0095845.1 MGP_C57BL6NJ_G0035962.1 mouse_genomes_project 9 129264938 129271238 + Tcaim protein_coding processed_transcript MGP_C57BL6NJ_T0095846.1 MGP_C57BL6NJ_G0035962.1 mouse_genomes_project 9 129264973 129310344 + MGP_C57BL6NJ_P0095846 Tcaim protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094488.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570112 108607267 + Nphp3 protein_coding retained_intron MGP_C57BL6NJ_T0094489.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570114 108615433 + MGP_C57BL6NJ_P0094489 Nphp3 protein_coding protein_coding MGP_C57BL6NJ_T0094490.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570222 108614724 + MGP_C57BL6NJ_P0094490 Nphp3 protein_coding protein_coding MGP_C57BL6NJ_T0094491.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570222 108739504 + MGP_C57BL6NJ_P0094491 Nphp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094492.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570326 108584251 + Nphp3 protein_coding retained_intron MGP_C57BL6NJ_T0094493.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108570335 108613959 + MGP_C57BL6NJ_P0094493 Nphp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094494.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108599421 108601984 + Nphp3 protein_coding retained_intron MGP_C57BL6NJ_T0094495.1 MGP_C57BL6NJ_G0035695.1 mouse_genomes_project 9 108603409 108606072 + MGP_C57BL6NJ_P0094495 Nphp3 protein_coding protein_coding MGP_C57BL6NJ_T0098915.1 MGP_C57BL6NJ_G0036979.1 mouse_genomes_project 9 44127862 44133334 - pseudogene pseudogene MGP_C57BL6NJ_T0094095.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523494 93534354 + MGP_C57BL6NJ_P0094095 Ctsh protein_coding protein_coding MGP_C57BL6NJ_T0094096.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523609 93544965 + MGP_C57BL6NJ_P0094096 Ctsh protein_coding protein_coding MGP_C57BL6NJ_T0094097.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523848 93544963 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0094098.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523863 93524681 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0094099.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523879 93533171 + MGP_C57BL6NJ_P0094099 Ctsh protein_coding protein_coding MGP_C57BL6NJ_T0094100.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523880 93544963 + MGP_C57BL6NJ_P0094100 Ctsh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094101.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523896 93536276 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0094102.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93523901 93544617 + MGP_C57BL6NJ_P0094102 Ctsh protein_coding protein_coding MGP_C57BL6NJ_T0094103.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93529084 93530555 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0094104.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93531453 93540817 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0094105.1 MGP_C57BL6NJ_G0035613.1 mouse_genomes_project 9 93540627 93544625 + Ctsh protein_coding retained_intron MGP_C57BL6NJ_T0092167.1 MGP_C57BL6NJ_G0035019.1 mouse_genomes_project 9 34040719 34092277 - MGP_C57BL6NJ_P0092167 Dcps protein_coding protein_coding MGP_C57BL6NJ_T0092168.1 MGP_C57BL6NJ_G0035019.1 mouse_genomes_project 9 34040723 34092275 - MGP_C57BL6NJ_P0092168 Dcps protein_coding protein_coding MGP_C57BL6NJ_T0092169.1 MGP_C57BL6NJ_G0035019.1 mouse_genomes_project 9 34042618 34092209 - MGP_C57BL6NJ_P0092169 Dcps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091985.1 MGP_C57BL6NJ_G0034953.1 mouse_genomes_project 9 19811692 19870222 - MGP_C57BL6NJ_P0091985 Dock6 protein_coding protein_coding MGP_C57BL6NJ_T0091987.1 MGP_C57BL6NJ_G0034953.1 mouse_genomes_project 9 19853914 19870175 - MGP_C57BL6NJ_P0091987 Dock6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093771.1 MGP_C57BL6NJ_G0035532.1 mouse_genomes_project 9 77837715 77900271 - MGP_C57BL6NJ_P0093771 Tmod3 protein_coding protein_coding MGP_C57BL6NJ_T0009502.1 MGP_C57BL6NJ_G0007632.1 mouse_genomes_project 9 101119568 101127327 + Gm26767 lincRNA lincRNA MGP_C57BL6NJ_T0092138.1 MGP_C57BL6NJ_G0035010.1 mouse_genomes_project 9 30114094 30151582 - MGP_C57BL6NJ_P0092138 Tmem45b protein_coding protein_coding MGP_C57BL6NJ_T0092490.1 MGP_C57BL6NJ_G0035174.1 mouse_genomes_project 9 42599167 42746697 - MGP_C57BL6NJ_P0092490 Arhgef12 protein_coding protein_coding MGP_C57BL6NJ_T0092491.1 MGP_C57BL6NJ_G0035174.1 mouse_genomes_project 9 42599168 42746465 - MGP_C57BL6NJ_P0092491 Arhgef12 protein_coding protein_coding MGP_C57BL6NJ_T0092290.1 MGP_C57BL6NJ_G0035054.1 mouse_genomes_project 9 36463740 36485100 + MGP_C57BL6NJ_P0092290 Hepacam protein_coding protein_coding MGP_C57BL6NJ_T0011370.1 MGP_C57BL6NJ_G0009455.1 mouse_genomes_project 9 125087232 125087322 + Mir26a-1 miRNA miRNA MGP_C57BL6NJ_T0002508.1 MGP_C57BL6NJ_G0002396.1 mouse_genomes_project 9 74024220 74026519 - TEC TEC MGP_C57BL6NJ_T0011334.1 MGP_C57BL6NJ_G0009419.1 mouse_genomes_project 9 65614391 65614518 + Gm24106 miRNA miRNA MGP_C57BL6NJ_T0009531.1 MGP_C57BL6NJ_G0007654.1 mouse_genomes_project 9 115482554 115489003 - Gm42775 lincRNA lincRNA MGP_C57BL6NJ_T0016560.1 MGP_C57BL6NJ_G0014605.1 mouse_genomes_project 9 88177041 88177486 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094986.1 MGP_C57BL6NJ_G0035775.1 mouse_genomes_project 9 112949071 112952631 + MGP_C57BL6NJ_P0094986 Gmppb protein_coding protein_coding MGP_C57BL6NJ_T0094987.1 MGP_C57BL6NJ_G0035775.1 mouse_genomes_project 9 112949098 112949411 + Gmppb protein_coding processed_transcript MGP_C57BL6NJ_T0094988.1 MGP_C57BL6NJ_G0035775.1 mouse_genomes_project 9 112949118 112951746 + Gmppb protein_coding retained_intron MGP_C57BL6NJ_T0094989.1 MGP_C57BL6NJ_G0035775.1 mouse_genomes_project 9 112949154 112951532 + MGP_C57BL6NJ_P0094989 Gmppb protein_coding protein_coding MGP_C57BL6NJ_T0094990.1 MGP_C57BL6NJ_G0035775.1 mouse_genomes_project 9 112949284 112951349 + Gmppb protein_coding retained_intron MGP_C57BL6NJ_T0091721.1 MGP_C57BL6NJ_G0034843.1 mouse_genomes_project 9 11767936 11821792 - MGP_C57BL6NJ_P0091721 Kdm4d protein_coding protein_coding MGP_C57BL6NJ_T0092326.1 MGP_C57BL6NJ_G0035073.1 mouse_genomes_project 9 37202687 37203617 + MGP_C57BL6NJ_P0092326 Olfr883 protein_coding protein_coding MGP_C57BL6NJ_T0009424.1 MGP_C57BL6NJ_G0007572.1 mouse_genomes_project 9 43847364 43856134 + Gm26737 lincRNA lincRNA MGP_C57BL6NJ_T0092944.1 MGP_C57BL6NJ_G0035321.1 mouse_genomes_project 9 55275727 55295513 - MGP_C57BL6NJ_P0092944 Wdr61 protein_coding protein_coding MGP_C57BL6NJ_T0092945.1 MGP_C57BL6NJ_G0035321.1 mouse_genomes_project 9 55278147 55295528 - MGP_C57BL6NJ_P0092945 Wdr61 protein_coding protein_coding MGP_C57BL6NJ_T0092946.1 MGP_C57BL6NJ_G0035321.1 mouse_genomes_project 9 55280212 55281807 - Wdr61 protein_coding retained_intron MGP_C57BL6NJ_T0092947.1 MGP_C57BL6NJ_G0035321.1 mouse_genomes_project 9 55283517 55285350 - Wdr61 protein_coding retained_intron MGP_C57BL6NJ_T0092323.1 MGP_C57BL6NJ_G0035070.1 mouse_genomes_project 9 37070602 37071653 + MGP_C57BL6NJ_P0092323 Olfr145 protein_coding protein_coding MGP_C57BL6NJ_T0092250.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35770499 35810404 - MGP_C57BL6NJ_P0092250 Stt3a protein_coding protein_coding MGP_C57BL6NJ_T0092251.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35773578 35795816 - MGP_C57BL6NJ_P0092251 Stt3a protein_coding protein_coding MGP_C57BL6NJ_T0092252.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35793282 35810369 - MGP_C57BL6NJ_P0092252 Stt3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092253.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35798491 35799495 - Stt3a protein_coding retained_intron MGP_C57BL6NJ_T0092254.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35798914 35810100 - MGP_C57BL6NJ_P0092254 Stt3a protein_coding protein_coding MGP_C57BL6NJ_T0092255.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35805408 35810323 - Stt3a protein_coding retained_intron MGP_C57BL6NJ_T0092256.1 MGP_C57BL6NJ_G0035047.1 mouse_genomes_project 9 35805628 35810366 - Stt3a protein_coding retained_intron MGP_C57BL6NJ_T0100718.1 MGP_C57BL6NJ_G0038764.1 mouse_genomes_project 9 68001184 68001286 - Gm23428 snRNA snRNA MGP_C57BL6NJ_T0094144.1 MGP_C57BL6NJ_G0035619.1 mouse_genomes_project 9 95844205 95860939 + MGP_C57BL6NJ_P0094144 Plscr5 protein_coding protein_coding MGP_C57BL6NJ_T0093183.1 MGP_C57BL6NJ_G0035395.1 mouse_genomes_project 9 60597766 60643270 + MGP_C57BL6NJ_P0093183 Parp6 protein_coding protein_coding MGP_C57BL6NJ_T0093870.1 MGP_C57BL6NJ_G0035564.1 mouse_genomes_project 9 81184249 81240008 - MGP_C57BL6NJ_P0093870 Slc17a5 protein_coding protein_coding MGP_C57BL6NJ_T0093871.1 MGP_C57BL6NJ_G0035564.1 mouse_genomes_project 9 81184267 81239982 - MGP_C57BL6NJ_P0093871 Slc17a5 protein_coding protein_coding MGP_C57BL6NJ_T0093872.1 MGP_C57BL6NJ_G0035564.1 mouse_genomes_project 9 81216451 81239994 - MGP_C57BL6NJ_P0093872 Slc17a5 protein_coding protein_coding MGP_C57BL6NJ_T0092387.1 MGP_C57BL6NJ_G0035127.1 mouse_genomes_project 9 38832165 38841919 - MGP_C57BL6NJ_P0092387 Olfr44 protein_coding protein_coding MGP_C57BL6NJ_T0005571.1 MGP_C57BL6NJ_G0004718.1 mouse_genomes_project 9 4701156 4730309 - AV064505 antisense antisense MGP_C57BL6NJ_T0093369.1 MGP_C57BL6NJ_G0035443.1 mouse_genomes_project 9 66705560 66733422 + MGP_C57BL6NJ_P0093369 Parp16 protein_coding protein_coding MGP_C57BL6NJ_T0093479.1 MGP_C57BL6NJ_G0035474.1 mouse_genomes_project 9 68542256 68622086 - MGP_C57BL6NJ_P0093479 Rab8b protein_coding protein_coding MGP_C57BL6NJ_T0095754.1 MGP_C57BL6NJ_G0035938.1 mouse_genomes_project 9 126801381 126802108 + MGP_C57BL6NJ_P0095754 5830454E08Rik protein_coding protein_coding MGP_C57BL6NJ_T0092775.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49700288 50012557 - MGP_C57BL6NJ_P0092775 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092776.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49700300 49768930 - MGP_C57BL6NJ_P0092776 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092777.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49705749 50012504 - MGP_C57BL6NJ_P0092777 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092778.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49717981 50012522 - MGP_C57BL6NJ_P0092778 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092780.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49724271 49743762 - MGP_C57BL6NJ_P0092780 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092781.1 MGP_C57BL6NJ_G0035267.1 mouse_genomes_project 9 49731921 50012390 - MGP_C57BL6NJ_P0092781 Ncam1 protein_coding protein_coding MGP_C57BL6NJ_T0092634.1 MGP_C57BL6NJ_G0035217.1 mouse_genomes_project 9 44785234 44796455 - MGP_C57BL6NJ_P0092634 Cd3g protein_coding protein_coding MGP_C57BL6NJ_T0092635.1 MGP_C57BL6NJ_G0035217.1 mouse_genomes_project 9 44785416 44786483 - Cd3g protein_coding retained_intron MGP_C57BL6NJ_T0092636.1 MGP_C57BL6NJ_G0035217.1 mouse_genomes_project 9 44789282 44796455 - MGP_C57BL6NJ_P0092636 Cd3g protein_coding protein_coding MGP_C57BL6NJ_T0005668.1 MGP_C57BL6NJ_G0004781.1 mouse_genomes_project 9 101066455 101072533 + Gm16010 antisense antisense MGP_C57BL6NJ_T0005669.1 MGP_C57BL6NJ_G0004781.1 mouse_genomes_project 9 101067963 101068935 + Gm16010 antisense antisense MGP_C57BL6NJ_T0011342.1 MGP_C57BL6NJ_G0009427.1 mouse_genomes_project 9 74074648 74074738 + Gm27450 miRNA miRNA MGP_C57BL6NJ_T0091819.1 MGP_C57BL6NJ_G0034885.1 mouse_genomes_project 9 17075898 17076840 - MGP_C57BL6NJ_P0091819 Olfr846 protein_coding protein_coding MGP_C57BL6NJ_T0092524.1 MGP_C57BL6NJ_G0035186.1 mouse_genomes_project 9 43871365 43875952 + MGP_C57BL6NJ_P0092524 Mcam protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092525.1 MGP_C57BL6NJ_G0035186.1 mouse_genomes_project 9 43871707 43881143 + MGP_C57BL6NJ_P0092525 Mcam protein_coding protein_coding MGP_C57BL6NJ_T0092526.1 MGP_C57BL6NJ_G0035186.1 mouse_genomes_project 9 43873561 43874290 + MGP_C57BL6NJ_P0092526 Mcam protein_coding protein_coding MGP_C57BL6NJ_T0092527.1 MGP_C57BL6NJ_G0035186.1 mouse_genomes_project 9 43873878 43876700 + Mcam protein_coding retained_intron MGP_C57BL6NJ_T0092011.1 MGP_C57BL6NJ_G0034966.1 mouse_genomes_project 9 20130433 20144606 - MGP_C57BL6NJ_P0092011 Ecsit protein_coding protein_coding MGP_C57BL6NJ_T0092012.1 MGP_C57BL6NJ_G0034966.1 mouse_genomes_project 9 20130433 20144617 - MGP_C57BL6NJ_P0092012 Ecsit protein_coding protein_coding MGP_C57BL6NJ_T0092013.1 MGP_C57BL6NJ_G0034966.1 mouse_genomes_project 9 20130433 20144581 - MGP_C57BL6NJ_P0092013 Ecsit protein_coding protein_coding MGP_C57BL6NJ_T0092014.1 MGP_C57BL6NJ_G0034966.1 mouse_genomes_project 9 20131678 20144606 - MGP_C57BL6NJ_P0092014 Ecsit protein_coding protein_coding MGP_C57BL6NJ_T0092762.1 MGP_C57BL6NJ_G0035260.1 mouse_genomes_project 9 49153224 49213869 + MGP_C57BL6NJ_P0092762 Usp28 protein_coding protein_coding MGP_C57BL6NJ_T0092763.1 MGP_C57BL6NJ_G0035260.1 mouse_genomes_project 9 49153283 49213866 + MGP_C57BL6NJ_P0092763 Usp28 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093360.1 MGP_C57BL6NJ_G0035437.1 mouse_genomes_project 9 66391542 66421319 - MGP_C57BL6NJ_P0093360 Slc24a1 protein_coding protein_coding MGP_C57BL6NJ_T0005680.1 MGP_C57BL6NJ_G0004791.1 mouse_genomes_project 9 110023803 110033879 + antisense antisense MGP_C57BL6NJ_T0094618.1 MGP_C57BL6NJ_G0035717.1 mouse_genomes_project 9 110969072 110973358 + MGP_C57BL6NJ_P0094618 Tlr9 protein_coding protein_coding MGP_C57BL6NJ_T0098912.1 MGP_C57BL6NJ_G0036976.1 mouse_genomes_project 9 37381201 37382127 + pseudogene pseudogene MGP_C57BL6NJ_T0005687.1 MGP_C57BL6NJ_G0004796.1 mouse_genomes_project 9 111242424 111243162 - Gm28959 antisense antisense MGP_C57BL6NJ_T0102042.1 MGP_C57BL6NJ_G0040088.1 mouse_genomes_project 9 112018211 112018341 + Gm23595 snoRNA snoRNA MGP_C57BL6NJ_T0005589.1 MGP_C57BL6NJ_G0004730.1 mouse_genomes_project 9 35810659 35837066 + antisense antisense MGP_C57BL6NJ_T0092401.1 MGP_C57BL6NJ_G0035135.1 mouse_genomes_project 9 39041079 39042015 + MGP_C57BL6NJ_P0092401 Olfr963 protein_coding protein_coding MGP_C57BL6NJ_T0093763.1 MGP_C57BL6NJ_G0035529.1 mouse_genomes_project 9 77665879 77669753 + MGP_C57BL6NJ_P0093763 Bcl2l10 protein_coding protein_coding MGP_C57BL6NJ_T0092496.1 MGP_C57BL6NJ_G0035178.1 mouse_genomes_project 9 42909503 42933871 + MGP_C57BL6NJ_P0092496 protein_coding protein_coding MGP_C57BL6NJ_T0009507.1 MGP_C57BL6NJ_G0007637.1 mouse_genomes_project 9 104660163 104662077 - Gm28167 lincRNA lincRNA MGP_C57BL6NJ_T0002613.1 MGP_C57BL6NJ_G0002500.1 mouse_genomes_project 9 116182934 116185723 - TEC TEC MGP_C57BL6NJ_T0091801.1 MGP_C57BL6NJ_G0034870.1 mouse_genomes_project 9 16071755 16096766 - MGP_C57BL6NJ_P0091801 Zfp558 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091802.1 MGP_C57BL6NJ_G0034870.1 mouse_genomes_project 9 16072372 16092062 - MGP_C57BL6NJ_P0091802 Zfp558 protein_coding protein_coding MGP_C57BL6NJ_T0091803.1 MGP_C57BL6NJ_G0034870.1 mouse_genomes_project 9 16075837 16096771 - Zfp558 protein_coding processed_transcript MGP_C57BL6NJ_T0091804.1 MGP_C57BL6NJ_G0034870.1 mouse_genomes_project 9 16091392 16091925 - Zfp558 protein_coding processed_transcript MGP_C57BL6NJ_T0002493.1 MGP_C57BL6NJ_G0002381.1 mouse_genomes_project 9 31303616 31305430 - TEC TEC MGP_C57BL6NJ_T0091823.1 MGP_C57BL6NJ_G0034889.1 mouse_genomes_project 9 17233126 17234065 + MGP_C57BL6NJ_P0091823 Olfr851 protein_coding protein_coding MGP_C57BL6NJ_T0095301.1 MGP_C57BL6NJ_G0035825.1 mouse_genomes_project 9 114396611 114437390 - MGP_C57BL6NJ_P0095301 protein_coding protein_coding MGP_C57BL6NJ_T0095302.1 MGP_C57BL6NJ_G0035825.1 mouse_genomes_project 9 114396955 114437390 - MGP_C57BL6NJ_P0095302 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094179.1 MGP_C57BL6NJ_G0035629.1 mouse_genomes_project 9 99454816 99463190 + MGP_C57BL6NJ_P0094179 Paqr9 protein_coding protein_coding MGP_C57BL6NJ_T0016543.1 MGP_C57BL6NJ_G0014588.1 mouse_genomes_project 9 79334721 79335019 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092332.1 MGP_C57BL6NJ_G0035078.1 mouse_genomes_project 9 37298183 37299219 + MGP_C57BL6NJ_P0092332 Olfr889 protein_coding protein_coding MGP_C57BL6NJ_T0102037.1 MGP_C57BL6NJ_G0040083.1 mouse_genomes_project 9 104247015 104247149 + Gm23594 snoRNA snoRNA MGP_C57BL6NJ_T0092374.1 MGP_C57BL6NJ_G0035114.1 mouse_genomes_project 9 38276913 38278642 - MGP_C57BL6NJ_P0092374 Olfr935 protein_coding protein_coding MGP_C57BL6NJ_T0093328.1 MGP_C57BL6NJ_G0035430.1 mouse_genomes_project 9 65568606 65644807 - MGP_C57BL6NJ_P0093328 Map2k1 protein_coding protein_coding MGP_C57BL6NJ_T0093329.1 MGP_C57BL6NJ_G0035430.1 mouse_genomes_project 9 65569365 65570701 - Map2k1 protein_coding retained_intron MGP_C57BL6NJ_T0093330.1 MGP_C57BL6NJ_G0035430.1 mouse_genomes_project 9 65569573 65571093 - Map2k1 protein_coding retained_intron MGP_C57BL6NJ_T0093331.1 MGP_C57BL6NJ_G0035430.1 mouse_genomes_project 9 65570125 65581104 - Map2k1 protein_coding processed_transcript MGP_C57BL6NJ_T0092230.1 MGP_C57BL6NJ_G0035039.1 mouse_genomes_project 9 35262078 35269942 - 9230113P08Rik protein_coding retained_intron MGP_C57BL6NJ_T0092231.1 MGP_C57BL6NJ_G0035039.1 mouse_genomes_project 9 35268830 35269923 - MGP_C57BL6NJ_P0092231 9230113P08Rik protein_coding protein_coding MGP_C57BL6NJ_T0095836.1 MGP_C57BL6NJ_G0035959.1 mouse_genomes_project 9 128581305 128704495 - MGP_C57BL6NJ_P0095836 Ano10 protein_coding protein_coding MGP_C57BL6NJ_T0095435.1 MGP_C57BL6NJ_G0035849.1 mouse_genomes_project 9 115850554 115853872 - MGP_C57BL6NJ_P0095435 Nradd protein_coding protein_coding MGP_C57BL6NJ_T0095436.1 MGP_C57BL6NJ_G0035849.1 mouse_genomes_project 9 115850927 115852742 - MGP_C57BL6NJ_P0095436 Nradd protein_coding protein_coding MGP_C57BL6NJ_T0095437.1 MGP_C57BL6NJ_G0035849.1 mouse_genomes_project 9 115851304 115853798 - MGP_C57BL6NJ_P0095437 Nradd protein_coding protein_coding MGP_C57BL6NJ_T0095438.1 MGP_C57BL6NJ_G0035849.1 mouse_genomes_project 9 115851999 115853851 - Nradd protein_coding retained_intron MGP_C57BL6NJ_T0092023.1 MGP_C57BL6NJ_G0034971.1 mouse_genomes_project 9 20253183 20270847 + MGP_C57BL6NJ_P0092023 Zfp872 protein_coding protein_coding MGP_C57BL6NJ_T0092024.1 MGP_C57BL6NJ_G0034971.1 mouse_genomes_project 9 20265790 20269348 + MGP_C57BL6NJ_P0092024 Zfp872 protein_coding protein_coding MGP_C57BL6NJ_T0093924.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85822849 85936748 - MGP_C57BL6NJ_P0093924 Phip protein_coding protein_coding MGP_C57BL6NJ_T0093925.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85827012 85853734 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093926.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85845618 85848849 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093927.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85850691 85936640 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093928.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85851973 85853454 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093929.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85854526 85858475 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093930.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85858017 85893239 - MGP_C57BL6NJ_P0093930 Phip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093931.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85860804 85868055 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093932.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85873780 85936658 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093933.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85874390 85887783 - MGP_C57BL6NJ_P0093933 Phip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093934.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85876507 85878296 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093935.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85886511 85888815 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093936.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85887821 85935500 - MGP_C57BL6NJ_P0093936 Phip protein_coding protein_coding MGP_C57BL6NJ_T0093937.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85890629 85893696 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093938.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85905032 85936648 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0093939.1 MGP_C57BL6NJ_G0035576.1 mouse_genomes_project 9 85916331 85936651 - Phip protein_coding retained_intron MGP_C57BL6NJ_T0091897.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18771277 18775254 + MGP_C57BL6NJ_P0091897 Ppan protein_coding protein_coding MGP_C57BL6NJ_T0091898.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18771352 18773417 + Ppan protein_coding retained_intron MGP_C57BL6NJ_T0091899.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18771369 18772758 + Ppan protein_coding retained_intron MGP_C57BL6NJ_T0091900.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18771387 18775254 + Ppan protein_coding retained_intron MGP_C57BL6NJ_T0091901.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18773713 18774430 + Ppan protein_coding retained_intron MGP_C57BL6NJ_T0091902.1 MGP_C57BL6NJ_G0034920.1 mouse_genomes_project 9 18774282 18774758 + Ppan protein_coding retained_intron MGP_C57BL6NJ_T0095208.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113865505 113866507 + Slc26a6 protein_coding processed_transcript MGP_C57BL6NJ_T0095209.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113865570 113874366 + MGP_C57BL6NJ_P0095209 Slc26a6 protein_coding protein_coding MGP_C57BL6NJ_T0095210.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866259 113873051 + MGP_C57BL6NJ_P0095210 Slc26a6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095211.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866259 113876591 + MGP_C57BL6NJ_P0095211 Slc26a6 protein_coding protein_coding MGP_C57BL6NJ_T0095212.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866265 113874366 + MGP_C57BL6NJ_P0095212 Slc26a6 protein_coding protein_coding MGP_C57BL6NJ_T0095213.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866296 113874366 + Slc26a6 protein_coding retained_intron MGP_C57BL6NJ_T0095214.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866316 113874366 + Slc26a6 protein_coding retained_intron MGP_C57BL6NJ_T0095215.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113866357 113874366 + MGP_C57BL6NJ_P0095215 Slc26a6 protein_coding protein_coding MGP_C57BL6NJ_T0095216.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113867884 113874366 + MGP_C57BL6NJ_P0095216 Slc26a6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095217.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113868046 113877086 + MGP_C57BL6NJ_P0095217 Slc26a6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095218.1 MGP_C57BL6NJ_G0035808.1 mouse_genomes_project 9 113876442 113877082 + MGP_C57BL6NJ_P0095218 Slc26a6 protein_coding protein_coding MGP_C57BL6NJ_T0093100.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58873688 58969806 - MGP_C57BL6NJ_P0093100 Ccdc33 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093101.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58873695 58951112 - MGP_C57BL6NJ_P0093101 Ccdc33 protein_coding protein_coding MGP_C57BL6NJ_T0093102.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58873696 58969885 - MGP_C57BL6NJ_P0093102 Ccdc33 protein_coding protein_coding MGP_C57BL6NJ_T0093103.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58873700 58951040 - MGP_C57BL6NJ_P0093103 Ccdc33 protein_coding protein_coding MGP_C57BL6NJ_T0093104.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58873737 58875995 - Ccdc33 protein_coding retained_intron MGP_C57BL6NJ_T0093105.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58878250 58886905 - Ccdc33 protein_coding processed_transcript MGP_C57BL6NJ_T0093107.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58913398 58965422 - Ccdc33 protein_coding processed_transcript MGP_C57BL6NJ_T0093108.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58922899 58927956 - Ccdc33 protein_coding retained_intron MGP_C57BL6NJ_T0093111.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58935142 58951112 - Ccdc33 protein_coding retained_intron MGP_C57BL6NJ_T0093112.1 MGP_C57BL6NJ_G0035375.1 mouse_genomes_project 9 58960600 58969869 - MGP_C57BL6NJ_P0093112 Ccdc33 protein_coding protein_coding MGP_C57BL6NJ_T0095409.1 MGP_C57BL6NJ_G0035844.1 mouse_genomes_project 9 115583239 115606267 - MGP_C57BL6NJ_P0095409 Ptpn23 protein_coding protein_coding MGP_C57BL6NJ_T0095410.1 MGP_C57BL6NJ_G0035844.1 mouse_genomes_project 9 115583481 115584405 - MGP_C57BL6NJ_P0095410 Ptpn23 protein_coding protein_coding MGP_C57BL6NJ_T0095411.1 MGP_C57BL6NJ_G0035844.1 mouse_genomes_project 9 115583997 115584807 - Ptpn23 protein_coding retained_intron MGP_C57BL6NJ_T0095412.1 MGP_C57BL6NJ_G0035844.1 mouse_genomes_project 9 115587336 115588561 - Ptpn23 protein_coding retained_intron MGP_C57BL6NJ_T0093593.1 MGP_C57BL6NJ_G0035500.1 mouse_genomes_project 9 73490456 73497949 - MGP_C57BL6NJ_P0093593 Polr2m protein_coding protein_coding MGP_C57BL6NJ_T0093598.1 MGP_C57BL6NJ_G0035500.1 mouse_genomes_project 9 73493465 73497904 - MGP_C57BL6NJ_P0093598 Polr2m protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095500.1 MGP_C57BL6NJ_G0035865.1 mouse_genomes_project 9 116300045 116306626 - MGP_C57BL6NJ_P0095500 protein_coding protein_coding MGP_C57BL6NJ_T0095501.1 MGP_C57BL6NJ_G0035865.1 mouse_genomes_project 9 116304443 116307496 - MGP_C57BL6NJ_P0095501 protein_coding protein_coding MGP_C57BL6NJ_T0100702.1 MGP_C57BL6NJ_G0038748.1 mouse_genomes_project 9 44241855 44241972 - Gm22540 snRNA snRNA MGP_C57BL6NJ_T0092418.1 MGP_C57BL6NJ_G0035152.1 mouse_genomes_project 9 39449376 39450373 + MGP_C57BL6NJ_P0092418 Olfr981 protein_coding protein_coding MGP_C57BL6NJ_T0092329.1 MGP_C57BL6NJ_G0035075.1 mouse_genomes_project 9 37239924 37240854 + MGP_C57BL6NJ_P0092329 Olfr885 protein_coding protein_coding MGP_C57BL6NJ_T0091965.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529425 19579724 + MGP_C57BL6NJ_P0091965 Carm1 protein_coding protein_coding MGP_C57BL6NJ_T0091966.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529444 19579744 + MGP_C57BL6NJ_P0091966 Carm1 protein_coding protein_coding MGP_C57BL6NJ_T0091967.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529454 19579724 + Carm1 protein_coding retained_intron MGP_C57BL6NJ_T0091968.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529454 19579724 + MGP_C57BL6NJ_P0091968 Carm1 protein_coding protein_coding MGP_C57BL6NJ_T0091969.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529458 19579724 + MGP_C57BL6NJ_P0091969 Carm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091970.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19529585 19569724 + Carm1 protein_coding processed_transcript MGP_C57BL6NJ_T0091971.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19565360 19570596 + Carm1 protein_coding processed_transcript MGP_C57BL6NJ_T0091972.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19577474 19578457 + Carm1 protein_coding processed_transcript MGP_C57BL6NJ_T0091973.1 MGP_C57BL6NJ_G0034946.1 mouse_genomes_project 9 19577659 19578386 + Carm1 protein_coding processed_transcript MGP_C57BL6NJ_T0016511.1 MGP_C57BL6NJ_G0014556.1 mouse_genomes_project 9 50421530 50422533 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092555.1 MGP_C57BL6NJ_G0035195.1 mouse_genomes_project 9 44091399 44093275 + MGP_C57BL6NJ_P0092555 H2afx protein_coding protein_coding MGP_C57BL6NJ_T0016586.1 MGP_C57BL6NJ_G0014631.1 mouse_genomes_project 9 96301021 96301487 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016616.1 MGP_C57BL6NJ_G0014661.1 mouse_genomes_project 9 107026898 107028399 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095157.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113560910 113580443 - MGP_C57BL6NJ_P0095157 P4htm protein_coding protein_coding MGP_C57BL6NJ_T0095158.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113561227 113561606 - P4htm protein_coding processed_transcript MGP_C57BL6NJ_T0095159.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113562637 113564993 - P4htm protein_coding retained_intron MGP_C57BL6NJ_T0095160.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113563607 113580352 - P4htm protein_coding retained_intron MGP_C57BL6NJ_T0095161.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113565047 113580356 - MGP_C57BL6NJ_P0095161 P4htm protein_coding protein_coding MGP_C57BL6NJ_T0095162.1 MGP_C57BL6NJ_G0035801.1 mouse_genomes_project 9 113565047 113580122 - MGP_C57BL6NJ_P0095162 P4htm protein_coding protein_coding MGP_C57BL6NJ_T0011997.1 MGP_C57BL6NJ_G0010082.1 mouse_genomes_project 9 16197390 16197696 + Gm25295 misc_RNA misc_RNA MGP_C57BL6NJ_T0102046.1 MGP_C57BL6NJ_G0040092.1 mouse_genomes_project 9 115298421 115298559 - Gm23377 snoRNA snoRNA MGP_C57BL6NJ_T0093022.1 MGP_C57BL6NJ_G0035346.1 mouse_genomes_project 9 57648161 57662523 - MGP_C57BL6NJ_P0093022 Snx33 protein_coding protein_coding MGP_C57BL6NJ_T0093772.1 MGP_C57BL6NJ_G0035533.1 mouse_genomes_project 9 77906003 77951806 - MGP_C57BL6NJ_P0093772 Tmod2 protein_coding protein_coding MGP_C57BL6NJ_T0093773.1 MGP_C57BL6NJ_G0035533.1 mouse_genomes_project 9 77906003 77939610 - MGP_C57BL6NJ_P0093773 Tmod2 protein_coding protein_coding MGP_C57BL6NJ_T0093774.1 MGP_C57BL6NJ_G0035533.1 mouse_genomes_project 9 77914198 77938128 - MGP_C57BL6NJ_P0093774 Tmod2 protein_coding protein_coding MGP_C57BL6NJ_T0095177.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113692187 113732278 + MGP_C57BL6NJ_P0095177 Prkar2a protein_coding protein_coding MGP_C57BL6NJ_T0095178.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113695016 113756529 + MGP_C57BL6NJ_P0095178 Prkar2a protein_coding protein_coding MGP_C57BL6NJ_T0095179.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113695330 113753087 + MGP_C57BL6NJ_P0095179 Prkar2a protein_coding protein_coding MGP_C57BL6NJ_T0095180.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113720979 113750356 + MGP_C57BL6NJ_P0095180 Prkar2a protein_coding protein_coding MGP_C57BL6NJ_T0095181.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113745979 113747304 + Prkar2a protein_coding retained_intron MGP_C57BL6NJ_T0095182.1 MGP_C57BL6NJ_G0035804.1 mouse_genomes_project 9 113754337 113755596 + Prkar2a protein_coding processed_transcript MGP_C57BL6NJ_T0093777.1 MGP_C57BL6NJ_G0035536.1 mouse_genomes_project 9 78125327 78262278 + MGP_C57BL6NJ_P0093777 Bmp5 protein_coding protein_coding MGP_C57BL6NJ_T0093778.1 MGP_C57BL6NJ_G0035536.1 mouse_genomes_project 9 78185784 78202604 + Bmp5 protein_coding processed_transcript MGP_C57BL6NJ_T0002568.1 MGP_C57BL6NJ_G0002455.1 mouse_genomes_project 9 103572544 103573235 + TEC TEC MGP_C57BL6NJ_T0094050.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91660071 91726894 - MGP_C57BL6NJ_P0094050 Snx14 protein_coding protein_coding MGP_C57BL6NJ_T0094051.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91660073 91681438 - Snx14 protein_coding retained_intron MGP_C57BL6NJ_T0094052.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91660073 91726841 - MGP_C57BL6NJ_P0094052 Snx14 protein_coding protein_coding MGP_C57BL6NJ_T0094053.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91660085 91726901 - MGP_C57BL6NJ_P0094053 Snx14 protein_coding protein_coding MGP_C57BL6NJ_T0094054.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91660088 91726857 - MGP_C57BL6NJ_P0094054 Snx14 protein_coding protein_coding MGP_C57BL6NJ_T0094055.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91664913 91726872 - MGP_C57BL6NJ_P0094055 Snx14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094056.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91675022 91677291 - Snx14 protein_coding retained_intron MGP_C57BL6NJ_T0094058.1 MGP_C57BL6NJ_G0035600.1 mouse_genomes_project 9 91703209 91726855 - Snx14 protein_coding retained_intron MGP_C57BL6NJ_T0011343.1 MGP_C57BL6NJ_G0009428.1 mouse_genomes_project 9 75133273 75133395 + Gm27353 miRNA miRNA MGP_C57BL6NJ_T0092015.1 MGP_C57BL6NJ_G0034967.1 mouse_genomes_project 9 20160961 20171496 + MGP_C57BL6NJ_P0092015 Cnn1 protein_coding protein_coding MGP_C57BL6NJ_T0005681.1 MGP_C57BL6NJ_G0004792.1 mouse_genomes_project 9 110171163 110181260 + Gm19667 antisense antisense MGP_C57BL6NJ_T0092797.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50895819 50903496 + MGP_C57BL6NJ_P0092797 Pih1d2 protein_coding protein_coding MGP_C57BL6NJ_T0092798.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50895831 50901142 + Pih1d2 protein_coding retained_intron MGP_C57BL6NJ_T0092799.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50895835 50900277 + MGP_C57BL6NJ_P0092799 Pih1d2 protein_coding protein_coding MGP_C57BL6NJ_T0092800.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50895881 50903499 + MGP_C57BL6NJ_P0092800 Pih1d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092801.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50896019 50897316 + Pih1d2 protein_coding retained_intron MGP_C57BL6NJ_T0092802.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50896048 50899689 + MGP_C57BL6NJ_P0092802 Pih1d2 protein_coding protein_coding MGP_C57BL6NJ_T0092803.1 MGP_C57BL6NJ_G0035277.1 mouse_genomes_project 9 50896505 50899564 + MGP_C57BL6NJ_P0092803 Pih1d2 protein_coding protein_coding MGP_C57BL6NJ_T0009426.1 MGP_C57BL6NJ_G0007574.1 mouse_genomes_project 9 44243363 44245133 + C030014I23Rik lincRNA lincRNA MGP_C57BL6NJ_T0009427.1 MGP_C57BL6NJ_G0007574.1 mouse_genomes_project 9 44244217 44247580 + C030014I23Rik lincRNA lincRNA MGP_C57BL6NJ_T0002507.1 MGP_C57BL6NJ_G0002395.1 mouse_genomes_project 9 73981137 73983132 - TEC TEC MGP_C57BL6NJ_T0093095.1 MGP_C57BL6NJ_G0035373.1 mouse_genomes_project 9 58779989 58802730 + MGP_C57BL6NJ_P0093095 Sema7a protein_coding protein_coding MGP_C57BL6NJ_T0093736.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326671 77349753 + MGP_C57BL6NJ_P0093736 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093737.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326671 77349734 + MGP_C57BL6NJ_P0093737 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093738.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326734 77328126 + Arpp19 protein_coding retained_intron MGP_C57BL6NJ_T0093739.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326734 77346278 + MGP_C57BL6NJ_P0093739 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093740.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326736 77347150 + MGP_C57BL6NJ_P0093740 Arpp19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093741.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326775 77349753 + MGP_C57BL6NJ_P0093741 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093742.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77326806 77346333 + MGP_C57BL6NJ_P0093742 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093743.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77327471 77346262 + MGP_C57BL6NJ_P0093743 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093744.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77327569 77346245 + MGP_C57BL6NJ_P0093744 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093745.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77341416 77346823 + MGP_C57BL6NJ_P0093745 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0093746.1 MGP_C57BL6NJ_G0035525.1 mouse_genomes_project 9 77341490 77347516 + MGP_C57BL6NJ_P0093746 Arpp19 protein_coding protein_coding MGP_C57BL6NJ_T0012011.1 MGP_C57BL6NJ_G0010096.1 mouse_genomes_project 9 111443180 111443446 + Gm26185 misc_RNA misc_RNA MGP_C57BL6NJ_T0092236.1 MGP_C57BL6NJ_G0035044.1 mouse_genomes_project 9 35674653 35677502 - MGP_C57BL6NJ_P0092236 A630095E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0092237.1 MGP_C57BL6NJ_G0035044.1 mouse_genomes_project 9 35674653 35677502 - MGP_C57BL6NJ_P0092237 A630095E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0092238.1 MGP_C57BL6NJ_G0035044.1 mouse_genomes_project 9 35674655 35685457 - A630095E13Rik protein_coding retained_intron MGP_C57BL6NJ_T0094031.1 MGP_C57BL6NJ_G0035594.1 mouse_genomes_project 9 90233728 90238168 + MGP_C57BL6NJ_P0094031 Ripply2 protein_coding protein_coding MGP_C57BL6NJ_T0094032.1 MGP_C57BL6NJ_G0035594.1 mouse_genomes_project 9 90233754 90238169 + MGP_C57BL6NJ_P0094032 Ripply2 protein_coding protein_coding MGP_C57BL6NJ_T0094852.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112522115 112530900 - MGP_C57BL6NJ_P0094852 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094853.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112522636 112538978 - MGP_C57BL6NJ_P0094853 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094854.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112522638 112540607 - Slc38a3 protein_coding retained_intron MGP_C57BL6NJ_T0094855.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112522642 112539030 - MGP_C57BL6NJ_P0094855 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094856.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112522642 112540572 - MGP_C57BL6NJ_P0094856 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094857.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112526391 112528014 - MGP_C57BL6NJ_P0094857 Slc38a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094858.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112526421 112527601 - MGP_C57BL6NJ_P0094858 Slc38a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094859.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112526441 112527392 - Slc38a3 protein_coding retained_intron MGP_C57BL6NJ_T0094860.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112527773 112528633 - Slc38a3 protein_coding retained_intron MGP_C57BL6NJ_T0094861.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112528268 112530591 - Slc38a3 protein_coding processed_transcript MGP_C57BL6NJ_T0094862.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112529001 112541134 - MGP_C57BL6NJ_P0094862 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094863.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112529182 112540604 - MGP_C57BL6NJ_P0094863 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094864.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112530007 112537065 - MGP_C57BL6NJ_P0094864 Slc38a3 protein_coding protein_coding MGP_C57BL6NJ_T0094865.1 MGP_C57BL6NJ_G0035759.1 mouse_genomes_project 9 112530590 112540617 - Slc38a3 protein_coding processed_transcript MGP_C57BL6NJ_T0095549.1 MGP_C57BL6NJ_G0035872.1 mouse_genomes_project 9 116786662 116839223 + MGP_C57BL6NJ_P0095549 Dclk3 protein_coding protein_coding MGP_C57BL6NJ_T0011324.1 MGP_C57BL6NJ_G0009409.1 mouse_genomes_project 9 48635232 48635329 - Gm23653 miRNA miRNA MGP_C57BL6NJ_T0091928.1 MGP_C57BL6NJ_G0034935.1 mouse_genomes_project 9 19177708 19183208 - MGP_C57BL6NJ_P0091928 S1pr5 protein_coding protein_coding MGP_C57BL6NJ_T0094418.1 MGP_C57BL6NJ_G0035681.1 mouse_genomes_project 9 107110003 107118133 + MGP_C57BL6NJ_P0094418 Anapc13 protein_coding protein_coding MGP_C57BL6NJ_T0094419.1 MGP_C57BL6NJ_G0035681.1 mouse_genomes_project 9 107110031 107117958 + MGP_C57BL6NJ_P0094419 Anapc13 protein_coding protein_coding MGP_C57BL6NJ_T0094420.1 MGP_C57BL6NJ_G0035681.1 mouse_genomes_project 9 107110370 107117950 + MGP_C57BL6NJ_P0094420 Anapc13 protein_coding protein_coding MGP_C57BL6NJ_T0094421.1 MGP_C57BL6NJ_G0035681.1 mouse_genomes_project 9 107110386 107117950 + MGP_C57BL6NJ_P0094421 Anapc13 protein_coding protein_coding MGP_C57BL6NJ_T0094422.1 MGP_C57BL6NJ_G0035681.1 mouse_genomes_project 9 107112219 107113435 + Anapc13 protein_coding retained_intron MGP_C57BL6NJ_T0100719.1 MGP_C57BL6NJ_G0038765.1 mouse_genomes_project 9 68687551 68687649 - Gm24225 snRNA snRNA MGP_C57BL6NJ_T0002552.1 MGP_C57BL6NJ_G0002439.1 mouse_genomes_project 9 94843822 94846297 - TEC TEC MGP_C57BL6NJ_T0019063.1 MGP_C57BL6NJ_G0016157.1 mouse_genomes_project 9 123144771 123149092 + processed_transcript processed_transcript MGP_C57BL6NJ_T0094282.1 MGP_C57BL6NJ_G0035646.1 mouse_genomes_project 9 102420015 102540915 + MGP_C57BL6NJ_P0094282 Nmnat3 protein_coding protein_coding MGP_C57BL6NJ_T0094283.1 MGP_C57BL6NJ_G0035646.1 mouse_genomes_project 9 102420035 102504456 + Nmnat3 protein_coding processed_transcript MGP_C57BL6NJ_T0094284.1 MGP_C57BL6NJ_G0035646.1 mouse_genomes_project 9 102429177 102489511 + Nmnat3 protein_coding retained_intron MGP_C57BL6NJ_T0094285.1 MGP_C57BL6NJ_G0035646.1 mouse_genomes_project 9 102429177 102563265 + MGP_C57BL6NJ_P0094285 Nmnat3 protein_coding protein_coding MGP_C57BL6NJ_T0094287.1 MGP_C57BL6NJ_G0035646.1 mouse_genomes_project 9 102487809 102553408 + MGP_C57BL6NJ_P0094287 Nmnat3 protein_coding protein_coding MGP_C57BL6NJ_T0101991.1 MGP_C57BL6NJ_G0040037.1 mouse_genomes_project 9 18773832 18773912 + Gm23008 snoRNA snoRNA MGP_C57BL6NJ_T0092302.1 MGP_C57BL6NJ_G0035058.1 mouse_genomes_project 9 36660427 36672996 + MGP_C57BL6NJ_P0092302 Esam protein_coding protein_coding MGP_C57BL6NJ_T0092303.1 MGP_C57BL6NJ_G0035058.1 mouse_genomes_project 9 36661130 36671791 + MGP_C57BL6NJ_P0092303 Esam protein_coding protein_coding MGP_C57BL6NJ_T0092304.1 MGP_C57BL6NJ_G0035058.1 mouse_genomes_project 9 36664840 36666232 + MGP_C57BL6NJ_P0092304 Esam protein_coding protein_coding MGP_C57BL6NJ_T0092305.1 MGP_C57BL6NJ_G0035058.1 mouse_genomes_project 9 36665514 36668878 + MGP_C57BL6NJ_P0092305 Esam protein_coding protein_coding MGP_C57BL6NJ_T0092306.1 MGP_C57BL6NJ_G0035058.1 mouse_genomes_project 9 36670928 36672169 + Esam protein_coding retained_intron MGP_C57BL6NJ_T0095692.1 MGP_C57BL6NJ_G0035911.1 mouse_genomes_project 9 125209582 125227888 - MGP_C57BL6NJ_P0095692 Acaa1b protein_coding protein_coding MGP_C57BL6NJ_T0095693.1 MGP_C57BL6NJ_G0035911.1 mouse_genomes_project 9 125210700 125217687 - Acaa1b protein_coding retained_intron MGP_C57BL6NJ_T0019051.1 MGP_C57BL6NJ_G0016153.1 mouse_genomes_project 9 113049476 113053716 + 4930447F24Rik processed_transcript antisense MGP_C57BL6NJ_T0019052.1 MGP_C57BL6NJ_G0016153.1 mouse_genomes_project 9 113052666 113054379 + 4930447F24Rik processed_transcript antisense MGP_C57BL6NJ_T0019053.1 MGP_C57BL6NJ_G0016153.1 mouse_genomes_project 9 113053139 113053527 + 4930447F24Rik processed_transcript retained_intron MGP_C57BL6NJ_T0011356.1 MGP_C57BL6NJ_G0009441.1 mouse_genomes_project 9 113012133 113012251 - miRNA miRNA MGP_C57BL6NJ_T0092948.1 MGP_C57BL6NJ_G0035322.1 mouse_genomes_project 9 55325721 55334084 + MGP_C57BL6NJ_P0092948 Crabp1 protein_coding protein_coding MGP_C57BL6NJ_T0095751.1 MGP_C57BL6NJ_G0035936.1 mouse_genomes_project 9 126758014 126792354 + MGP_C57BL6NJ_P0095751 Entpd3 protein_coding protein_coding MGP_C57BL6NJ_T0095752.1 MGP_C57BL6NJ_G0035936.1 mouse_genomes_project 9 126782099 126785020 + Entpd3 protein_coding retained_intron MGP_C57BL6NJ_T0095314.1 MGP_C57BL6NJ_G0035833.1 mouse_genomes_project 9 114831144 114859535 - MGP_C57BL6NJ_P0095314 Fbxw26 protein_coding protein_coding MGP_C57BL6NJ_T0092782.1 MGP_C57BL6NJ_G0035269.1 mouse_genomes_project 9 50761230 50774785 + MGP_C57BL6NJ_P0092782 Plet1 protein_coding protein_coding MGP_C57BL6NJ_T0092783.1 MGP_C57BL6NJ_G0035269.1 mouse_genomes_project 9 50761232 50770032 + MGP_C57BL6NJ_P0092783 Plet1 protein_coding protein_coding MGP_C57BL6NJ_T0016502.1 MGP_C57BL6NJ_G0014547.1 mouse_genomes_project 9 35565445 35565837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101994.1 MGP_C57BL6NJ_G0040040.1 mouse_genomes_project 9 23852039 23852148 - Gm25861 snoRNA snoRNA MGP_C57BL6NJ_T0092711.1 MGP_C57BL6NJ_G0035241.1 mouse_genomes_project 9 46139444 46141331 + MGP_C57BL6NJ_P0092711 Apoa1 protein_coding protein_coding MGP_C57BL6NJ_T0092712.1 MGP_C57BL6NJ_G0035241.1 mouse_genomes_project 9 46139585 46140838 + Apoa1 protein_coding retained_intron MGP_C57BL6NJ_T0100692.1 MGP_C57BL6NJ_G0038738.1 mouse_genomes_project 9 18063277 18063422 - Gm26290 snRNA snRNA MGP_C57BL6NJ_T0099188.1 MGP_C57BL6NJ_G0037252.1 mouse_genomes_project 9 121368971 121369090 - n-R5s92 rRNA rRNA MGP_C57BL6NJ_T0016625.1 MGP_C57BL6NJ_G0014670.1 mouse_genomes_project 9 111965680 111965979 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002579.1 MGP_C57BL6NJ_G0002466.1 mouse_genomes_project 9 106355621 106357870 - TEC TEC MGP_C57BL6NJ_T0091594.1 MGP_C57BL6NJ_G0034799.1 mouse_genomes_project 9 197272 276822 + MGP_C57BL6NJ_P0091594 Cwf19l2 protein_coding protein_coding MGP_C57BL6NJ_T0092086.1 MGP_C57BL6NJ_G0034994.1 mouse_genomes_project 9 25364292 25371946 + MGP_C57BL6NJ_P0092086 Thyn1 protein_coding protein_coding MGP_C57BL6NJ_T0094106.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93565226 93591499 - MGP_C57BL6NJ_P0094106 Morf4l1 protein_coding protein_coding MGP_C57BL6NJ_T0094107.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93565231 93591395 - Morf4l1 protein_coding retained_intron MGP_C57BL6NJ_T0094108.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93565411 93591485 - MGP_C57BL6NJ_P0094108 Morf4l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094109.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93565495 93591044 - Morf4l1 protein_coding processed_transcript MGP_C57BL6NJ_T0094110.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93567305 93569100 - Morf4l1 protein_coding retained_intron MGP_C57BL6NJ_T0094111.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93572699 93573606 - Morf4l1 protein_coding retained_intron MGP_C57BL6NJ_T0094112.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93573124 93591414 - MGP_C57BL6NJ_P0094112 Morf4l1 protein_coding protein_coding MGP_C57BL6NJ_T0094113.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93573602 93591284 - Morf4l1 protein_coding processed_transcript MGP_C57BL6NJ_T0094114.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93573602 93591453 - MGP_C57BL6NJ_P0094114 Morf4l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094115.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93578741 93591365 - Morf4l1 protein_coding retained_intron MGP_C57BL6NJ_T0094116.1 MGP_C57BL6NJ_G0035614.1 mouse_genomes_project 9 93584391 93591338 - Morf4l1 protein_coding retained_intron MGP_C57BL6NJ_T0092200.1 MGP_C57BL6NJ_G0035024.1 mouse_genomes_project 9 34182289 34190433 + MGP_C57BL6NJ_P0092200 Rpusd4 protein_coding protein_coding MGP_C57BL6NJ_T0092201.1 MGP_C57BL6NJ_G0035024.1 mouse_genomes_project 9 34186716 34189678 + Rpusd4 protein_coding retained_intron MGP_C57BL6NJ_T0092202.1 MGP_C57BL6NJ_G0035024.1 mouse_genomes_project 9 34187072 34188188 + Rpusd4 protein_coding retained_intron MGP_C57BL6NJ_T0092203.1 MGP_C57BL6NJ_G0035024.1 mouse_genomes_project 9 34189664 34192199 + MGP_C57BL6NJ_P0092203 Rpusd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101990.1 MGP_C57BL6NJ_G0040036.1 mouse_genomes_project 9 18772559 18772644 + Gm24067 snoRNA snoRNA MGP_C57BL6NJ_T0093287.1 MGP_C57BL6NJ_G0035420.1 mouse_genomes_project 9 64484598 64703424 - MGP_C57BL6NJ_P0093287 Map2k5 protein_coding protein_coding MGP_C57BL6NJ_T0092445.1 MGP_C57BL6NJ_G0035162.1 mouse_genomes_project 9 40124810 40125212 + MGP_C57BL6NJ_P0092445 Gm21915 protein_coding protein_coding MGP_C57BL6NJ_T0093582.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73108921 73172228 - MGP_C57BL6NJ_P0093582 Aqp9 protein_coding protein_coding MGP_C57BL6NJ_T0093583.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73108923 73172199 - MGP_C57BL6NJ_P0093583 Aqp9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093584.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73108924 73171572 - MGP_C57BL6NJ_P0093584 Aqp9 protein_coding protein_coding MGP_C57BL6NJ_T0093585.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73110106 73177566 - MGP_C57BL6NJ_P0093585 Aqp9 protein_coding protein_coding MGP_C57BL6NJ_T0093586.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73171911 73174141 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0093587.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73171967 73176802 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0093588.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73172413 73177591 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0093589.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73172413 73176542 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0093590.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73172414 73177586 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0093591.1 MGP_C57BL6NJ_G0035498.1 mouse_genomes_project 9 73174055 73176758 - Aqp9 protein_coding processed_transcript MGP_C57BL6NJ_T0019023.1 MGP_C57BL6NJ_G0016144.1 mouse_genomes_project 9 88966885 88990772 - 9330154J02Rik processed_transcript antisense MGP_C57BL6NJ_T0019024.1 MGP_C57BL6NJ_G0016144.1 mouse_genomes_project 9 88966885 88989926 - 9330154J02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0019025.1 MGP_C57BL6NJ_G0016144.1 mouse_genomes_project 9 88966946 88990964 - 9330154J02Rik processed_transcript antisense MGP_C57BL6NJ_T0019026.1 MGP_C57BL6NJ_G0016144.1 mouse_genomes_project 9 88968170 88989925 - 9330154J02Rik processed_transcript retained_intron MGP_C57BL6NJ_T0011368.1 MGP_C57BL6NJ_G0009453.1 mouse_genomes_project 9 121146797 121146917 - Gm22243 miRNA miRNA MGP_C57BL6NJ_T0016593.1 MGP_C57BL6NJ_G0014638.1 mouse_genomes_project 9 99297403 99298133 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093487.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732956 68754262 - MGP_C57BL6NJ_P0093487 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093488.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732956 68759761 - MGP_C57BL6NJ_P0093488 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093489.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732956 68759622 - MGP_C57BL6NJ_P0093489 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093490.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732958 68754157 - MGP_C57BL6NJ_P0093490 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093491.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732959 68754317 - MGP_C57BL6NJ_P0093491 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093492.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732959 68759564 - MGP_C57BL6NJ_P0093492 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093493.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732972 68759541 - MGP_C57BL6NJ_P0093493 Tpm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093494.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732972 68759556 - MGP_C57BL6NJ_P0093494 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093495.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732981 68759630 - MGP_C57BL6NJ_P0093495 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093496.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68732988 68754133 - MGP_C57BL6NJ_P0093496 Tpm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093497.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68734690 68759527 - MGP_C57BL6NJ_P0093497 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093498.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68734692 68754064 - MGP_C57BL6NJ_P0093498 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093499.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68738249 68759619 - MGP_C57BL6NJ_P0093499 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093500.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68738249 68759568 - MGP_C57BL6NJ_P0093500 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093501.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68738323 68754196 - MGP_C57BL6NJ_P0093501 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093502.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68738346 68759498 - MGP_C57BL6NJ_P0093502 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093503.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68738405 68754088 - MGP_C57BL6NJ_P0093503 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093504.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68739205 68759617 - MGP_C57BL6NJ_P0093504 Tpm1 protein_coding protein_coding MGP_C57BL6NJ_T0093505.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68740277 68743183 - Tpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0093506.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68742577 68759473 - Tpm1 protein_coding retained_intron MGP_C57BL6NJ_T0093507.1 MGP_C57BL6NJ_G0035477.1 mouse_genomes_project 9 68744135 68759546 - Tpm1 protein_coding processed_transcript MGP_C57BL6NJ_T0011313.1 MGP_C57BL6NJ_G0009398.1 mouse_genomes_project 9 30808579 30808705 + Gm44453 miRNA miRNA MGP_C57BL6NJ_T0011357.1 MGP_C57BL6NJ_G0009442.1 mouse_genomes_project 9 113550343 113550463 - Gm24083 miRNA miRNA MGP_C57BL6NJ_T0016559.1 MGP_C57BL6NJ_G0014604.1 mouse_genomes_project 9 86973560 86984176 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016630.1 MGP_C57BL6NJ_G0014675.1 mouse_genomes_project 9 115075571 115075971 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009486.1 MGP_C57BL6NJ_G0007621.1 mouse_genomes_project 9 94368384 94371943 - Gm28703 lincRNA lincRNA MGP_C57BL6NJ_T0016578.1 MGP_C57BL6NJ_G0014623.1 mouse_genomes_project 9 93722537 93722812 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092345.1 MGP_C57BL6NJ_G0035091.1 mouse_genomes_project 9 37705299 37706232 + MGP_C57BL6NJ_P0092345 Olfr904 protein_coding protein_coding MGP_C57BL6NJ_T0002558.1 MGP_C57BL6NJ_G0002445.1 mouse_genomes_project 9 96222282 96226351 - TEC TEC MGP_C57BL6NJ_T0093020.1 MGP_C57BL6NJ_G0035344.1 mouse_genomes_project 9 57575242 57578547 - MGP_C57BL6NJ_P0093020 Odf3l1 protein_coding protein_coding MGP_C57BL6NJ_T0009490.1 MGP_C57BL6NJ_G0007625.1 mouse_genomes_project 9 96416422 96443972 + lincRNA lincRNA MGP_C57BL6NJ_T0009491.1 MGP_C57BL6NJ_G0007625.1 mouse_genomes_project 9 96417682 96491443 + lincRNA lincRNA MGP_C57BL6NJ_T0016554.1 MGP_C57BL6NJ_G0014599.1 mouse_genomes_project 9 85100703 85101454 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091829.1 MGP_C57BL6NJ_G0034895.1 mouse_genomes_project 9 17676883 17681008 - MGP_C57BL6NJ_P0091829 Olfr860 protein_coding protein_coding MGP_C57BL6NJ_T0091756.1 MGP_C57BL6NJ_G0034856.1 mouse_genomes_project 9 12640247 12659751 - MGP_C57BL6NJ_P0091756 Med17 protein_coding protein_coding MGP_C57BL6NJ_T0094165.1 MGP_C57BL6NJ_G0035626.1 mouse_genomes_project 9 98521273 99102380 + MGP_C57BL6NJ_P0094165 Slc9a9 protein_coding protein_coding MGP_C57BL6NJ_T0094166.1 MGP_C57BL6NJ_G0035626.1 mouse_genomes_project 9 98521296 98573070 + Slc9a9 protein_coding processed_transcript MGP_C57BL6NJ_T0094167.1 MGP_C57BL6NJ_G0035626.1 mouse_genomes_project 9 98792066 99102387 + MGP_C57BL6NJ_P0094167 Slc9a9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094168.1 MGP_C57BL6NJ_G0035626.1 mouse_genomes_project 9 98991932 98994739 + Slc9a9 protein_coding retained_intron MGP_C57BL6NJ_T0094289.1 MGP_C57BL6NJ_G0035649.1 mouse_genomes_project 9 102638037 102661574 + MGP_C57BL6NJ_P0094289 Rbp2 protein_coding protein_coding MGP_C57BL6NJ_T0094290.1 MGP_C57BL6NJ_G0035649.1 mouse_genomes_project 9 102638088 102661444 + MGP_C57BL6NJ_P0094290 Rbp2 protein_coding protein_coding MGP_C57BL6NJ_T0094291.1 MGP_C57BL6NJ_G0035649.1 mouse_genomes_project 9 102642459 102661564 + MGP_C57BL6NJ_P0094291 Rbp2 protein_coding protein_coding MGP_C57BL6NJ_T0094292.1 MGP_C57BL6NJ_G0035649.1 mouse_genomes_project 9 102643619 102650783 + Rbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0102054.1 MGP_C57BL6NJ_G0040100.1 mouse_genomes_project 9 129680740 129680873 + Gm23323 snoRNA snoRNA MGP_C57BL6NJ_T0011320.1 MGP_C57BL6NJ_G0009405.1 mouse_genomes_project 9 44092162 44092303 - Gm44335 miRNA miRNA MGP_C57BL6NJ_T0094819.1 MGP_C57BL6NJ_G0035755.1 mouse_genomes_project 9 112447789 112453814 + MGP_C57BL6NJ_P0094819 Hyal3 protein_coding protein_coding MGP_C57BL6NJ_T0094820.1 MGP_C57BL6NJ_G0035755.1 mouse_genomes_project 9 112448267 112454340 + MGP_C57BL6NJ_P0094820 Hyal3 protein_coding protein_coding MGP_C57BL6NJ_T0094821.1 MGP_C57BL6NJ_G0035755.1 mouse_genomes_project 9 112451733 112453643 + MGP_C57BL6NJ_P0094821 Hyal3 protein_coding protein_coding MGP_C57BL6NJ_T0016624.1 MGP_C57BL6NJ_G0014669.1 mouse_genomes_project 9 111896085 111897292 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094218.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100163796 100295406 + MGP_C57BL6NJ_P0094218 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094219.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100163827 100296423 + MGP_C57BL6NJ_P0094219 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094220.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100163859 100216332 + Tfdp2 protein_coding processed_transcript MGP_C57BL6NJ_T0094221.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100163928 100295413 + MGP_C57BL6NJ_P0094221 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094222.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100169636 100269440 + MGP_C57BL6NJ_P0094222 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094223.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100227227 100288024 + MGP_C57BL6NJ_P0094223 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094224.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100227264 100262057 + MGP_C57BL6NJ_P0094224 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094225.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100227281 100295409 + MGP_C57BL6NJ_P0094225 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094226.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100227798 100296347 + MGP_C57BL6NJ_P0094226 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0094227.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100262760 100265911 + Tfdp2 protein_coding retained_intron MGP_C57BL6NJ_T0094228.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100279412 100282560 + Tfdp2 protein_coding retained_intron MGP_C57BL6NJ_T0094229.1 MGP_C57BL6NJ_G0035636.1 mouse_genomes_project 9 100288007 100295345 + MGP_C57BL6NJ_P0094229 Tfdp2 protein_coding protein_coding MGP_C57BL6NJ_T0091834.1 MGP_C57BL6NJ_G0034900.1 mouse_genomes_project 9 17899003 17899999 - MGP_C57BL6NJ_P0091834 Olfr867 protein_coding protein_coding MGP_C57BL6NJ_T0016517.1 MGP_C57BL6NJ_G0014562.1 mouse_genomes_project 9 60855887 60856164 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101995.1 MGP_C57BL6NJ_G0040041.1 mouse_genomes_project 9 23885144 23885272 - Gm25346 snoRNA snoRNA MGP_C57BL6NJ_T0002603.1 MGP_C57BL6NJ_G0002490.1 mouse_genomes_project 9 113506103 113508037 + TEC TEC MGP_C57BL6NJ_T0095823.1 MGP_C57BL6NJ_G0035956.1 mouse_genomes_project 9 128344669 128374619 + MGP_C57BL6NJ_P0095823 Fam198a protein_coding protein_coding MGP_C57BL6NJ_T0095339.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115082677 115258050 + MGP_C57BL6NJ_P0095339 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095340.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115083017 115169887 + MGP_C57BL6NJ_P0095340 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095341.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115083081 115258042 + MGP_C57BL6NJ_P0095341 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095342.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115127420 115167437 + Map4 protein_coding processed_transcript MGP_C57BL6NJ_T0095343.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115207105 115246863 + MGP_C57BL6NJ_P0095343 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095344.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115226244 115258041 + MGP_C57BL6NJ_P0095344 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095345.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115226248 115257268 + MGP_C57BL6NJ_P0095345 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095346.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115226266 115258048 + MGP_C57BL6NJ_P0095346 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095347.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115236756 115242910 + Map4 protein_coding processed_transcript MGP_C57BL6NJ_T0095348.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115241741 115256182 + MGP_C57BL6NJ_P0095348 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095349.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115241741 115256592 + MGP_C57BL6NJ_P0095349 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095350.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115242981 115255890 + MGP_C57BL6NJ_P0095350 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095351.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115243005 115256009 + MGP_C57BL6NJ_P0095351 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095352.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115251686 115254130 + Map4 protein_coding retained_intron MGP_C57BL6NJ_T0095353.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115252135 115256245 + MGP_C57BL6NJ_P0095353 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0095354.1 MGP_C57BL6NJ_G0035838.1 mouse_genomes_project 9 115253894 115256592 + MGP_C57BL6NJ_P0095354 Map4 protein_coding protein_coding MGP_C57BL6NJ_T0102049.1 MGP_C57BL6NJ_G0040095.1 mouse_genomes_project 9 119306146 119306263 - Gm25059 snoRNA snoRNA MGP_C57BL6NJ_T0091635.1 MGP_C57BL6NJ_G0034814.1 mouse_genomes_project 9 4391309 4409780 - MGP_C57BL6NJ_P0091635 Mmp1b protein_coding protein_coding MGP_C57BL6NJ_T0093568.1 MGP_C57BL6NJ_G0035492.1 mouse_genomes_project 9 72368822 72420598 - MGP_C57BL6NJ_P0093568 Rnf111 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093569.1 MGP_C57BL6NJ_G0035492.1 mouse_genomes_project 9 72368829 72452383 - MGP_C57BL6NJ_P0093569 Rnf111 protein_coding protein_coding MGP_C57BL6NJ_T0093570.1 MGP_C57BL6NJ_G0035492.1 mouse_genomes_project 9 72368830 72452012 - MGP_C57BL6NJ_P0093570 Rnf111 protein_coding protein_coding MGP_C57BL6NJ_T0016600.1 MGP_C57BL6NJ_G0014645.1 mouse_genomes_project 9 101094217 101094518 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101988.1 MGP_C57BL6NJ_G0040034.1 mouse_genomes_project 9 12709946 12710022 - Gm24339 snoRNA snoRNA MGP_C57BL6NJ_T0102014.1 MGP_C57BL6NJ_G0040060.1 mouse_genomes_project 9 65555065 65555164 + Gm23136 snoRNA snoRNA MGP_C57BL6NJ_T0092000.1 MGP_C57BL6NJ_G0034960.1 mouse_genomes_project 9 19989395 19994073 - MGP_C57BL6NJ_P0092000 Epor protein_coding protein_coding MGP_C57BL6NJ_T0092001.1 MGP_C57BL6NJ_G0034960.1 mouse_genomes_project 9 19989555 19993136 - MGP_C57BL6NJ_P0092001 Epor protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016566.1 MGP_C57BL6NJ_G0014611.1 mouse_genomes_project 9 90656086 90656564 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005686.1 MGP_C57BL6NJ_G0004795.1 mouse_genomes_project 9 111081862 111109103 - Gm29123 antisense antisense MGP_C57BL6NJ_T0002514.1 MGP_C57BL6NJ_G0002402.1 mouse_genomes_project 9 74410174 74411157 + TEC TEC MGP_C57BL6NJ_T0092027.1 MGP_C57BL6NJ_G0034974.1 mouse_genomes_project 9 20355581 20387327 - MGP_C57BL6NJ_P0092027 Zfp810 protein_coding protein_coding MGP_C57BL6NJ_T0092671.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45716289 45741913 + MGP_C57BL6NJ_P0092671 Bace1 protein_coding protein_coding MGP_C57BL6NJ_T0092672.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45716289 45740032 + MGP_C57BL6NJ_P0092672 Bace1 protein_coding protein_coding MGP_C57BL6NJ_T0092673.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45716949 45734723 + MGP_C57BL6NJ_P0092673 Bace1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092674.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45717623 45732257 + Bace1 protein_coding processed_transcript MGP_C57BL6NJ_T0092675.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45730272 45739770 + Bace1 protein_coding retained_intron MGP_C57BL6NJ_T0092676.1 MGP_C57BL6NJ_G0035234.1 mouse_genomes_project 9 45732176 45737913 + MGP_C57BL6NJ_P0092676 Bace1 protein_coding protein_coding MGP_C57BL6NJ_T0093066.1 MGP_C57BL6NJ_G0035360.1 mouse_genomes_project 9 58335206 58340779 + MGP_C57BL6NJ_P0093066 Fam219b protein_coding protein_coding MGP_C57BL6NJ_T0094922.1 MGP_C57BL6NJ_G0035765.1 mouse_genomes_project 9 112790555 112804062 + MGP_C57BL6NJ_P0094922 Mst1r protein_coding protein_coding MGP_C57BL6NJ_T0094923.1 MGP_C57BL6NJ_G0035765.1 mouse_genomes_project 9 112790589 112804060 + MGP_C57BL6NJ_P0094923 Mst1r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094924.1 MGP_C57BL6NJ_G0035765.1 mouse_genomes_project 9 112798687 112799413 + Mst1r protein_coding retained_intron MGP_C57BL6NJ_T0094925.1 MGP_C57BL6NJ_G0035765.1 mouse_genomes_project 9 112799908 112800589 + Mst1r protein_coding retained_intron MGP_C57BL6NJ_T0095881.1 MGP_C57BL6NJ_G0035976.1 mouse_genomes_project 9 129905512 130007288 + MGP_C57BL6NJ_P0095881 Lars2 protein_coding protein_coding MGP_C57BL6NJ_T0091738.1 MGP_C57BL6NJ_G0034850.1 mouse_genomes_project 9 12123665 12179807 + MGP_C57BL6NJ_P0091738 Mre11a protein_coding protein_coding MGP_C57BL6NJ_T0091739.1 MGP_C57BL6NJ_G0034850.1 mouse_genomes_project 9 12123687 12182284 + MGP_C57BL6NJ_P0091739 Mre11a protein_coding protein_coding MGP_C57BL6NJ_T0091740.1 MGP_C57BL6NJ_G0034850.1 mouse_genomes_project 9 12123713 12139156 + MGP_C57BL6NJ_P0091740 Mre11a protein_coding protein_coding MGP_C57BL6NJ_T0091741.1 MGP_C57BL6NJ_G0034850.1 mouse_genomes_project 9 12136695 12151380 + MGP_C57BL6NJ_P0091741 Mre11a protein_coding protein_coding MGP_C57BL6NJ_T0091742.1 MGP_C57BL6NJ_G0034850.1 mouse_genomes_project 9 12136708 12143385 + MGP_C57BL6NJ_P0091742 Mre11a protein_coding protein_coding MGP_C57BL6NJ_T0005622.1 MGP_C57BL6NJ_G0004751.1 mouse_genomes_project 9 60966052 60973493 + Gm7616 antisense antisense MGP_C57BL6NJ_T0092289.1 MGP_C57BL6NJ_G0035053.1 mouse_genomes_project 9 36380377 36444874 - MGP_C57BL6NJ_P0092289 Ccdc15 protein_coding protein_coding MGP_C57BL6NJ_T0092226.1 MGP_C57BL6NJ_G0035035.1 mouse_genomes_project 9 34715557 34717143 - MGP_C57BL6NJ_P0092226 Gm17727 protein_coding protein_coding MGP_C57BL6NJ_T0011363.1 MGP_C57BL6NJ_G0009448.1 mouse_genomes_project 9 115469080 115469203 + Mir6236 miRNA miRNA MGP_C57BL6NJ_T0092382.1 MGP_C57BL6NJ_G0035122.1 mouse_genomes_project 9 38540308 38541253 - MGP_C57BL6NJ_P0092382 Olfr1537 protein_coding protein_coding MGP_C57BL6NJ_T0092344.1 MGP_C57BL6NJ_G0035090.1 mouse_genomes_project 9 37686930 37687986 + MGP_C57BL6NJ_P0092344 Olfr902 protein_coding protein_coding MGP_C57BL6NJ_T0002600.1 MGP_C57BL6NJ_G0002487.1 mouse_genomes_project 9 113105601 113106331 - TEC TEC MGP_C57BL6NJ_T0095810.1 MGP_C57BL6NJ_G0035949.1 mouse_genomes_project 9 128151632 128157939 + MGP_C57BL6NJ_P0095810 Klhl40 protein_coding protein_coding MGP_C57BL6NJ_T0091961.1 MGP_C57BL6NJ_G0034944.1 mouse_genomes_project 9 19484395 19487202 - MGP_C57BL6NJ_P0091961 Tmed1 protein_coding protein_coding MGP_C57BL6NJ_T0011366.1 MGP_C57BL6NJ_G0009451.1 mouse_genomes_project 9 117514418 117514494 - Mir128-2 miRNA miRNA MGP_C57BL6NJ_T0095616.1 MGP_C57BL6NJ_G0035892.1 mouse_genomes_project 9 120401333 120419393 + MGP_C57BL6NJ_P0095616 Cmtm6 protein_coding protein_coding MGP_C57BL6NJ_T0002538.1 MGP_C57BL6NJ_G0002426.1 mouse_genomes_project 9 88880980 88882332 + TEC TEC MGP_C57BL6NJ_T0005679.1 MGP_C57BL6NJ_G0004790.1 mouse_genomes_project 9 109880131 109883911 + Gm20643 antisense antisense MGP_C57BL6NJ_T0018998.1 MGP_C57BL6NJ_G0016133.1 mouse_genomes_project 9 60971959 60977811 - Gm15507 processed_transcript processed_transcript MGP_C57BL6NJ_T0018999.1 MGP_C57BL6NJ_G0016133.1 mouse_genomes_project 9 60972161 60977811 - Gm15507 processed_transcript processed_transcript MGP_C57BL6NJ_T0019000.1 MGP_C57BL6NJ_G0016133.1 mouse_genomes_project 9 60975044 60977841 - Gm15507 processed_transcript processed_transcript MGP_C57BL6NJ_T0005611.1 MGP_C57BL6NJ_G0004745.1 mouse_genomes_project 9 56161697 56162696 - Gm17226 antisense antisense MGP_C57BL6NJ_T0005612.1 MGP_C57BL6NJ_G0004745.1 mouse_genomes_project 9 56161708 56163037 - Gm17226 antisense antisense MGP_C57BL6NJ_T0092935.1 MGP_C57BL6NJ_G0035318.1 mouse_genomes_project 9 55144126 55162131 + MGP_C57BL6NJ_P0092935 Idh3a protein_coding protein_coding MGP_C57BL6NJ_T0092342.1 MGP_C57BL6NJ_G0035088.1 mouse_genomes_project 9 37620929 37623039 + MGP_C57BL6NJ_P0092342 Olfr147 protein_coding protein_coding MGP_C57BL6NJ_T0009513.1 MGP_C57BL6NJ_G0007643.1 mouse_genomes_project 9 107260326 107260586 - Gm28621 lincRNA lincRNA MGP_C57BL6NJ_T0092353.1 MGP_C57BL6NJ_G0035099.1 mouse_genomes_project 9 37869464 37870415 + MGP_C57BL6NJ_P0092353 Olfr914 protein_coding protein_coding MGP_C57BL6NJ_T0095725.1 MGP_C57BL6NJ_G0035926.1 mouse_genomes_project 9 126110529 126140682 + MGP_C57BL6NJ_P0095725 Ttc21a protein_coding protein_coding MGP_C57BL6NJ_T0095726.1 MGP_C57BL6NJ_G0035926.1 mouse_genomes_project 9 126110558 126139942 + Ttc21a protein_coding retained_intron MGP_C57BL6NJ_T0095727.1 MGP_C57BL6NJ_G0035926.1 mouse_genomes_project 9 126110559 126135565 + Ttc21a protein_coding retained_intron MGP_C57BL6NJ_T0095728.1 MGP_C57BL6NJ_G0035926.1 mouse_genomes_project 9 126134506 126139058 + Ttc21a protein_coding retained_intron MGP_C57BL6NJ_T0009493.1 MGP_C57BL6NJ_G0007627.1 mouse_genomes_project 9 96685488 96698115 - 1700034K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009494.1 MGP_C57BL6NJ_G0007627.1 mouse_genomes_project 9 96685488 96721693 - 1700034K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009495.1 MGP_C57BL6NJ_G0007627.1 mouse_genomes_project 9 96685569 96721699 - 1700034K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009496.1 MGP_C57BL6NJ_G0007627.1 mouse_genomes_project 9 96715356 96721690 - 1700034K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0091727.1 MGP_C57BL6NJ_G0034846.1 mouse_genomes_project 9 12032015 12042226 - MGP_C57BL6NJ_P0091727 Piwil4 protein_coding protein_coding MGP_C57BL6NJ_T0091728.1 MGP_C57BL6NJ_G0034846.1 mouse_genomes_project 9 12038933 12077845 - MGP_C57BL6NJ_P0091728 Piwil4 protein_coding protein_coding MGP_C57BL6NJ_T0091729.1 MGP_C57BL6NJ_G0034846.1 mouse_genomes_project 9 12038934 12055629 - MGP_C57BL6NJ_P0091729 Piwil4 protein_coding protein_coding MGP_C57BL6NJ_T0091730.1 MGP_C57BL6NJ_G0034846.1 mouse_genomes_project 9 12039513 12077857 - MGP_C57BL6NJ_P0091730 Piwil4 protein_coding protein_coding MGP_C57BL6NJ_T0100728.1 MGP_C57BL6NJ_G0038774.1 mouse_genomes_project 9 75095934 75096041 + Gm23567 snRNA snRNA MGP_C57BL6NJ_T0005626.1 MGP_C57BL6NJ_G0004754.1 mouse_genomes_project 9 68492472 68496654 - BC050972 antisense antisense MGP_C57BL6NJ_T0005627.1 MGP_C57BL6NJ_G0004754.1 mouse_genomes_project 9 68492705 68496354 - BC050972 antisense antisense MGP_C57BL6NJ_T0005628.1 MGP_C57BL6NJ_G0004754.1 mouse_genomes_project 9 68492734 68499516 - BC050972 antisense antisense MGP_C57BL6NJ_T0102331.1 MGP_C57BL6NJ_G0040287.1 mouse_genomes_project 9 112150109 112150998 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102332.1 MGP_C57BL6NJ_G0040287.1 mouse_genomes_project 9 112150684 112154812 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0009436.1 MGP_C57BL6NJ_G0007581.1 mouse_genomes_project 9 57831054 57831852 - 2700012I20Rik lincRNA lincRNA MGP_C57BL6NJ_T0095278.1 MGP_C57BL6NJ_G0035818.1 mouse_genomes_project 9 114057874 114068034 - MGP_C57BL6NJ_P0095278 Tma7 protein_coding protein_coding MGP_C57BL6NJ_T0095279.1 MGP_C57BL6NJ_G0035818.1 mouse_genomes_project 9 114061193 114068243 - MGP_C57BL6NJ_P0095279 Tma7 protein_coding protein_coding MGP_C57BL6NJ_T0095280.1 MGP_C57BL6NJ_G0035818.1 mouse_genomes_project 9 114067718 114068021 - Tma7 protein_coding retained_intron MGP_C57BL6NJ_T0019006.1 MGP_C57BL6NJ_G0016136.1 mouse_genomes_project 9 65441726 65447926 + Scarletltr processed_transcript processed_transcript MGP_C57BL6NJ_T0005575.1 MGP_C57BL6NJ_G0004721.1 mouse_genomes_project 9 18478016 18487796 + Fbxl12os antisense antisense MGP_C57BL6NJ_T0005576.1 MGP_C57BL6NJ_G0004721.1 mouse_genomes_project 9 18478203 18485519 + Fbxl12os antisense antisense MGP_C57BL6NJ_T0005577.1 MGP_C57BL6NJ_G0004721.1 mouse_genomes_project 9 18478351 18485524 + Fbxl12os antisense antisense MGP_C57BL6NJ_T0005578.1 MGP_C57BL6NJ_G0004721.1 mouse_genomes_project 9 18485255 18486421 + Fbxl12os antisense antisense MGP_C57BL6NJ_T0005580.1 MGP_C57BL6NJ_G0004723.1 mouse_genomes_project 9 20265686 20284821 - 1810064F22Rik antisense antisense MGP_C57BL6NJ_T0005581.1 MGP_C57BL6NJ_G0004723.1 mouse_genomes_project 9 20275586 20284842 - 1810064F22Rik antisense antisense MGP_C57BL6NJ_T0005582.1 MGP_C57BL6NJ_G0004723.1 mouse_genomes_project 9 20276146 20277352 - 1810064F22Rik antisense antisense MGP_C57BL6NJ_T0016637.1 MGP_C57BL6NJ_G0014682.1 mouse_genomes_project 9 126509119 126509709 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094270.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101128858 101167899 - MGP_C57BL6NJ_P0094270 Slc25a36 protein_coding protein_coding MGP_C57BL6NJ_T0094271.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101129462 101138942 - MGP_C57BL6NJ_P0094271 Slc25a36 protein_coding protein_coding MGP_C57BL6NJ_T0094272.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101133579 101167749 - MGP_C57BL6NJ_P0094272 Slc25a36 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094273.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101133865 101139724 - Slc25a36 protein_coding retained_intron MGP_C57BL6NJ_T0094274.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101134867 101144412 - Slc25a36 protein_coding processed_transcript MGP_C57BL6NJ_T0094275.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101135033 101144529 - Slc25a36 protein_coding processed_transcript MGP_C57BL6NJ_T0094276.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101144086 101154596 - MGP_C57BL6NJ_P0094276 Slc25a36 protein_coding protein_coding MGP_C57BL6NJ_T0094277.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101147188 101167729 - Slc25a36 protein_coding retained_intron MGP_C57BL6NJ_T0094278.1 MGP_C57BL6NJ_G0035643.1 mouse_genomes_project 9 101153678 101167775 - Slc25a36 protein_coding retained_intron MGP_C57BL6NJ_T0093810.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79943934 80062473 - MGP_C57BL6NJ_P0093810 Lrrc1 protein_coding protein_coding MGP_C57BL6NJ_T0093811.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79944091 80061698 - MGP_C57BL6NJ_P0093811 Lrrc1 protein_coding protein_coding MGP_C57BL6NJ_T0093812.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79944185 79962941 - Lrrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0093813.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79944200 79956450 - MGP_C57BL6NJ_P0093813 Lrrc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093814.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79948156 79956746 - Lrrc1 protein_coding retained_intron MGP_C57BL6NJ_T0093815.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79962946 80062453 - MGP_C57BL6NJ_P0093815 Lrrc1 protein_coding protein_coding MGP_C57BL6NJ_T0093816.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79972344 80014577 - Lrrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0093817.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 79986406 80062451 - Lrrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0093818.1 MGP_C57BL6NJ_G0035543.1 mouse_genomes_project 9 80058118 80062393 - Lrrc1 protein_coding retained_intron MGP_C57BL6NJ_T0005655.1 MGP_C57BL6NJ_G0004775.1 mouse_genomes_project 9 99513979 99547162 - Gm16126 antisense antisense MGP_C57BL6NJ_T0093458.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68172376 68256285 - MGP_C57BL6NJ_P0093458 Usp3 protein_coding protein_coding MGP_C57BL6NJ_T0093459.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68173954 68256143 - MGP_C57BL6NJ_P0093459 Usp3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093460.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68174947 68256179 - MGP_C57BL6NJ_P0093460 Usp3 protein_coding protein_coding MGP_C57BL6NJ_T0093461.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68175597 68256101 - Usp3 protein_coding retained_intron MGP_C57BL6NJ_T0093462.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68175795 68256149 - MGP_C57BL6NJ_P0093462 Usp3 protein_coding protein_coding MGP_C57BL6NJ_T0093463.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68175969 68178786 - Usp3 protein_coding retained_intron MGP_C57BL6NJ_T0093464.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68176128 68179267 - Usp3 protein_coding retained_intron MGP_C57BL6NJ_T0093465.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68185107 68188846 - Usp3 protein_coding retained_intron MGP_C57BL6NJ_T0093466.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68185422 68199406 - Usp3 protein_coding processed_transcript MGP_C57BL6NJ_T0093467.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68204516 68227535 - Usp3 protein_coding retained_intron MGP_C57BL6NJ_T0093468.1 MGP_C57BL6NJ_G0035469.1 mouse_genomes_project 9 68206921 68236688 - Usp3 protein_coding processed_transcript MGP_C57BL6NJ_T0011355.1 MGP_C57BL6NJ_G0009440.1 mouse_genomes_project 9 112990487 112990573 + Mir7088 miRNA miRNA MGP_C57BL6NJ_T0091937.1 MGP_C57BL6NJ_G0034938.1 mouse_genomes_project 9 19232815 19235562 - MGP_C57BL6NJ_P0091937 Cdkn2d protein_coding protein_coding MGP_C57BL6NJ_T0002556.1 MGP_C57BL6NJ_G0002443.1 mouse_genomes_project 9 94966912 94967800 - TEC TEC MGP_C57BL6NJ_T0016582.1 MGP_C57BL6NJ_G0014627.1 mouse_genomes_project 9 94447988 94448280 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092285.1 MGP_C57BL6NJ_G0035051.1 mouse_genomes_project 9 36306221 36321112 + MGP_C57BL6NJ_P0092285 Tmem218 protein_coding protein_coding MGP_C57BL6NJ_T0002592.1 MGP_C57BL6NJ_G0002479.1 mouse_genomes_project 9 108887935 108890916 - TEC TEC MGP_C57BL6NJ_T0100741.1 MGP_C57BL6NJ_G0038787.1 mouse_genomes_project 9 98486043 98486139 + Gm24178 snRNA snRNA MGP_C57BL6NJ_T0099182.1 MGP_C57BL6NJ_G0037246.1 mouse_genomes_project 9 100490007 100490089 - Gm27289 rRNA rRNA MGP_C57BL6NJ_T0098913.1 MGP_C57BL6NJ_G0036977.1 mouse_genomes_project 9 37763508 37764440 + pseudogene pseudogene MGP_C57BL6NJ_T0092056.1 MGP_C57BL6NJ_G0034984.1 mouse_genomes_project 9 22867888 22868531 + MGP_C57BL6NJ_P0092056 Cypt4 protein_coding protein_coding MGP_C57BL6NJ_T0009423.1 MGP_C57BL6NJ_G0007571.1 mouse_genomes_project 9 43139055 43139951 + Gm28215 lincRNA lincRNA MGP_C57BL6NJ_T0092228.1 MGP_C57BL6NJ_G0035037.1 mouse_genomes_project 9 35110114 35111243 - MGP_C57BL6NJ_P0092228 Gm5916 protein_coding protein_coding MGP_C57BL6NJ_T0094306.1 MGP_C57BL6NJ_G0035657.1 mouse_genomes_project 9 103205019 103220336 + MGP_C57BL6NJ_P0094306 Faim protein_coding protein_coding MGP_C57BL6NJ_T0094307.1 MGP_C57BL6NJ_G0035657.1 mouse_genomes_project 9 103205032 103209294 + Faim protein_coding retained_intron MGP_C57BL6NJ_T0094308.1 MGP_C57BL6NJ_G0035657.1 mouse_genomes_project 9 103205038 103211870 + Faim protein_coding retained_intron MGP_C57BL6NJ_T0094309.1 MGP_C57BL6NJ_G0035657.1 mouse_genomes_project 9 103210462 103220320 + MGP_C57BL6NJ_P0094309 Faim protein_coding protein_coding MGP_C57BL6NJ_T0002566.1 MGP_C57BL6NJ_G0002453.1 mouse_genomes_project 9 103494304 103496059 - TEC TEC MGP_C57BL6NJ_T0092376.1 MGP_C57BL6NJ_G0035116.1 mouse_genomes_project 9 38330717 38331653 - MGP_C57BL6NJ_P0092376 Olfr936 protein_coding protein_coding MGP_C57BL6NJ_T0091914.1 MGP_C57BL6NJ_G0034931.1 mouse_genomes_project 9 19028442 19057746 - MGP_C57BL6NJ_P0091914 Tyk2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091915.1 MGP_C57BL6NJ_G0034931.1 mouse_genomes_project 9 19028447 19053882 - MGP_C57BL6NJ_P0091915 Tyk2 protein_coding protein_coding MGP_C57BL6NJ_T0016536.1 MGP_C57BL6NJ_G0014581.1 mouse_genomes_project 9 76969645 76969952 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102043.1 MGP_C57BL6NJ_G0040089.1 mouse_genomes_project 9 112875196 112875324 + Gm24944 snoRNA snoRNA MGP_C57BL6NJ_T0005636.1 MGP_C57BL6NJ_G0004761.1 mouse_genomes_project 9 74681830 74684872 - Gm27241 antisense antisense MGP_C57BL6NJ_T0005637.1 MGP_C57BL6NJ_G0004761.1 mouse_genomes_project 9 74681964 74685044 - Gm27241 antisense antisense MGP_C57BL6NJ_T0018977.1 MGP_C57BL6NJ_G0016128.1 mouse_genomes_project 9 39766763 39786896 + 1700110K17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018978.1 MGP_C57BL6NJ_G0016128.1 mouse_genomes_project 9 39776805 39786890 + 1700110K17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0095530.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116570442 116613619 - MGP_C57BL6NJ_P0095530 Mlh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095531.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116570469 116613864 - MGP_C57BL6NJ_P0095531 Mlh1 protein_coding protein_coding MGP_C57BL6NJ_T0095532.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116570746 116572851 - Mlh1 protein_coding retained_intron MGP_C57BL6NJ_T0095533.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116572084 116573163 - Mlh1 protein_coding retained_intron MGP_C57BL6NJ_T0095534.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116572102 116613673 - Mlh1 protein_coding retained_intron MGP_C57BL6NJ_T0095535.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116583494 116589980 - Mlh1 protein_coding retained_intron MGP_C57BL6NJ_T0095536.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116583780 116599113 - MGP_C57BL6NJ_P0095536 Mlh1 protein_coding protein_coding MGP_C57BL6NJ_T0095537.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116591457 116604283 - MGP_C57BL6NJ_P0095537 Mlh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095538.1 MGP_C57BL6NJ_G0035869.1 mouse_genomes_project 9 116598809 116613607 - Mlh1 protein_coding processed_transcript MGP_C57BL6NJ_T0009453.1 MGP_C57BL6NJ_G0007594.1 mouse_genomes_project 9 71637689 71719920 + B230323A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009454.1 MGP_C57BL6NJ_G0007594.1 mouse_genomes_project 9 71640095 71719274 + B230323A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0092409.1 MGP_C57BL6NJ_G0035143.1 mouse_genomes_project 9 39251997 39252921 + MGP_C57BL6NJ_P0092409 Olfr971 protein_coding protein_coding MGP_C57BL6NJ_T0098914.1 MGP_C57BL6NJ_G0036978.1 mouse_genomes_project 9 39057947 39058846 - pseudogene pseudogene MGP_C57BL6NJ_T0095609.1 MGP_C57BL6NJ_G0035885.1 mouse_genomes_project 9 120020109 120102639 + MGP_C57BL6NJ_P0095609 Glb1 protein_coding protein_coding MGP_C57BL6NJ_T0011327.1 MGP_C57BL6NJ_G0009412.1 mouse_genomes_project 9 52493130 52493221 - Gm27686 miRNA miRNA MGP_C57BL6NJ_T0009482.1 MGP_C57BL6NJ_G0007619.1 mouse_genomes_project 9 93282308 93321953 + 4930524O08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009483.1 MGP_C57BL6NJ_G0007619.1 mouse_genomes_project 9 93282733 93294777 + 4930524O08Rik lincRNA lincRNA MGP_C57BL6NJ_T0009484.1 MGP_C57BL6NJ_G0007619.1 mouse_genomes_project 9 93282771 93294119 + 4930524O08Rik lincRNA lincRNA MGP_C57BL6NJ_T0102032.1 MGP_C57BL6NJ_G0040078.1 mouse_genomes_project 9 91813090 91813162 - Snord50a snoRNA snoRNA MGP_C57BL6NJ_T0092885.1 MGP_C57BL6NJ_G0035297.1 mouse_genomes_project 9 52501426 52557471 - MGP_C57BL6NJ_P0092885 Zc3h12c protein_coding protein_coding MGP_C57BL6NJ_T0016614.1 MGP_C57BL6NJ_G0014659.1 mouse_genomes_project 9 105858490 105858853 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099530.1 MGP_C57BL6NJ_G0037581.1 mouse_genomes_project 9 28141759 28143786 - Gm15521 sense_intronic sense_intronic MGP_C57BL6NJ_T0094811.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094811 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094812.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094812 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094813.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094813 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094814.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094814 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094815.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094815 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094816.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112445858 112450501 + MGP_C57BL6NJ_P0094816 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0094818.1 MGP_C57BL6NJ_G0035754.1 mouse_genomes_project 9 112447088 112451032 + MGP_C57BL6NJ_P0094818 Nat6 protein_coding protein_coding MGP_C57BL6NJ_T0093819.1 MGP_C57BL6NJ_G0035544.1 mouse_genomes_project 9 80158657 80194573 + MGP_C57BL6NJ_P0093819 Klhl31 protein_coding protein_coding MGP_C57BL6NJ_T0102326.1 MGP_C57BL6NJ_G0040285.1 mouse_genomes_project 9 59065303 59071068 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102327.1 MGP_C57BL6NJ_G0040285.1 mouse_genomes_project 9 59070439 59070956 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0100744.1 MGP_C57BL6NJ_G0038790.1 mouse_genomes_project 9 108078812 108078915 - Gm26360 snRNA snRNA MGP_C57BL6NJ_T0016631.1 MGP_C57BL6NJ_G0014676.1 mouse_genomes_project 9 115128836 115129604 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095106.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113483195 113491424 + MGP_C57BL6NJ_P0095106 Qars protein_coding protein_coding MGP_C57BL6NJ_T0095107.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113483540 113486570 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095108.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113483540 113487681 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095109.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113483540 113486554 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095110.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113483553 113491419 + MGP_C57BL6NJ_P0095110 Qars protein_coding protein_coding MGP_C57BL6NJ_T0095111.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113484961 113491419 + MGP_C57BL6NJ_P0095111 Qars protein_coding protein_coding MGP_C57BL6NJ_T0095112.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113487032 113488880 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095113.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113487092 113488374 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095114.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113488588 113489669 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095115.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113488591 113490641 + MGP_C57BL6NJ_P0095115 Qars protein_coding protein_coding MGP_C57BL6NJ_T0095116.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113488612 113489446 + Qars protein_coding processed_transcript MGP_C57BL6NJ_T0095117.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113489026 113489613 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095118.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113489208 113489841 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095119.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113489546 113491419 + MGP_C57BL6NJ_P0095119 Qars protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095120.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113490230 113490678 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095121.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113490233 113491412 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0095122.1 MGP_C57BL6NJ_G0035795.1 mouse_genomes_project 9 113490301 113491419 + Qars protein_coding retained_intron MGP_C57BL6NJ_T0093142.1 MGP_C57BL6NJ_G0035381.1 mouse_genomes_project 9 59185514 59216805 - MGP_C57BL6NJ_P0093142 Loxl1 protein_coding protein_coding MGP_C57BL6NJ_T0093376.1 MGP_C57BL6NJ_G0035446.1 mouse_genomes_project 9 66842093 66856646 + MGP_C57BL6NJ_P0093376 Pdcd7 protein_coding protein_coding MGP_C57BL6NJ_T0094304.1 MGP_C57BL6NJ_G0035655.1 mouse_genomes_project 9 103094203 103095707 + MGP_C57BL6NJ_P0094304 7420426K07Rik protein_coding protein_coding MGP_C57BL6NJ_T0095934.1 MGP_C57BL6NJ_G0035994.1 mouse_genomes_project 9 131050616 131050679 + MGP_C57BL6NJ_P0095934 Gm21836 protein_coding protein_coding MGP_C57BL6NJ_T0002543.1 MGP_C57BL6NJ_G0002430.1 mouse_genomes_project 9 90000641 90002948 - TEC TEC MGP_C57BL6NJ_T0092343.1 MGP_C57BL6NJ_G0035089.1 mouse_genomes_project 9 37664941 37665877 + MGP_C57BL6NJ_P0092343 Olfr901 protein_coding protein_coding MGP_C57BL6NJ_T0092291.1 MGP_C57BL6NJ_G0035055.1 mouse_genomes_project 9 36506717 36518838 + Robo4 protein_coding retained_intron MGP_C57BL6NJ_T0092292.1 MGP_C57BL6NJ_G0035055.1 mouse_genomes_project 9 36506717 36518842 + MGP_C57BL6NJ_P0092292 Robo4 protein_coding protein_coding MGP_C57BL6NJ_T0092293.1 MGP_C57BL6NJ_G0035055.1 mouse_genomes_project 9 36506853 36518840 + MGP_C57BL6NJ_P0092293 Robo4 protein_coding protein_coding MGP_C57BL6NJ_T0092294.1 MGP_C57BL6NJ_G0035055.1 mouse_genomes_project 9 36506866 36518841 + MGP_C57BL6NJ_P0092294 Robo4 protein_coding protein_coding MGP_C57BL6NJ_T0093566.1 MGP_C57BL6NJ_G0035490.1 mouse_genomes_project 9 72134938 72342930 + MGP_C57BL6NJ_P0093566 Myo1e protein_coding protein_coding MGP_C57BL6NJ_T0091912.1 MGP_C57BL6NJ_G0034929.1 mouse_genomes_project 9 18988626 18994621 - MGP_C57BL6NJ_P0091912 Fdx1l protein_coding protein_coding MGP_C57BL6NJ_T0092114.1 MGP_C57BL6NJ_G0035003.1 mouse_genomes_project 9 29528884 29552110 - MGP_C57BL6NJ_P0092114 Adamts15 protein_coding protein_coding MGP_C57BL6NJ_T0099187.1 MGP_C57BL6NJ_G0037251.1 mouse_genomes_project 9 116972461 116972579 - n-R5s90 rRNA rRNA MGP_C57BL6NJ_T0092030.1 MGP_C57BL6NJ_G0034977.1 mouse_genomes_project 9 20561225 20582289 - MGP_C57BL6NJ_P0092030 Rp9 protein_coding protein_coding MGP_C57BL6NJ_T0094180.1 MGP_C57BL6NJ_G0035630.1 mouse_genomes_project 9 99536287 99606057 + MGP_C57BL6NJ_P0094180 Pcolce2 protein_coding protein_coding MGP_C57BL6NJ_T0094181.1 MGP_C57BL6NJ_G0035630.1 mouse_genomes_project 9 99586747 99602644 + Pcolce2 protein_coding processed_transcript MGP_C57BL6NJ_T0016588.1 MGP_C57BL6NJ_G0014633.1 mouse_genomes_project 9 96681800 96682133 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095381.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115294450 115324268 + MGP_C57BL6NJ_P0095381 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095382.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115309182 115424310 + MGP_C57BL6NJ_P0095382 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095383.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115309239 115395615 + Smarcc1 protein_coding retained_intron MGP_C57BL6NJ_T0095384.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115309239 115419775 + MGP_C57BL6NJ_P0095384 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095385.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115309239 115424327 + MGP_C57BL6NJ_P0095385 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095386.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115309239 115364400 + MGP_C57BL6NJ_P0095386 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095387.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115365828 115387905 + Smarcc1 protein_coding retained_intron MGP_C57BL6NJ_T0095388.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115419391 115421884 + MGP_C57BL6NJ_P0095388 Smarcc1 protein_coding protein_coding MGP_C57BL6NJ_T0095389.1 MGP_C57BL6NJ_G0035840.1 mouse_genomes_project 9 115420877 115421875 + Smarcc1 protein_coding retained_intron MGP_C57BL6NJ_T0091638.1 MGP_C57BL6NJ_G0034817.1 mouse_genomes_project 9 4529820 4538932 + MGP_C57BL6NJ_P0091638 protein_coding protein_coding MGP_C57BL6NJ_T0093080.1 MGP_C57BL6NJ_G0035369.1 mouse_genomes_project 9 58529216 58574270 + MGP_C57BL6NJ_P0093080 Edc3 protein_coding protein_coding MGP_C57BL6NJ_T0093081.1 MGP_C57BL6NJ_G0035369.1 mouse_genomes_project 9 58529231 58573174 + MGP_C57BL6NJ_P0093081 Edc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093082.1 MGP_C57BL6NJ_G0035369.1 mouse_genomes_project 9 58529243 58536649 + MGP_C57BL6NJ_P0093082 Edc3 protein_coding protein_coding MGP_C57BL6NJ_T0091993.1 MGP_C57BL6NJ_G0034956.1 mouse_genomes_project 9 19946348 19952467 - MGP_C57BL6NJ_P0091993 Tmem205 protein_coding protein_coding MGP_C57BL6NJ_T0091994.1 MGP_C57BL6NJ_G0034956.1 mouse_genomes_project 9 19946348 19952467 - MGP_C57BL6NJ_P0091994 Tmem205 protein_coding protein_coding MGP_C57BL6NJ_T0016583.1 MGP_C57BL6NJ_G0014628.1 mouse_genomes_project 9 94790255 94790697 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091910.1 MGP_C57BL6NJ_G0034927.1 mouse_genomes_project 9 18941525 18950362 + MGP_C57BL6NJ_P0091910 Icam5 protein_coding protein_coding MGP_C57BL6NJ_T0005621.1 MGP_C57BL6NJ_G0004750.1 mouse_genomes_project 9 58968876 58970051 + Gm16131 antisense antisense MGP_C57BL6NJ_T0092224.1 MGP_C57BL6NJ_G0035033.1 mouse_genomes_project 9 34685697 34686901 + MGP_C57BL6NJ_P0092224 Gm17677 protein_coding protein_coding MGP_C57BL6NJ_T0016533.1 MGP_C57BL6NJ_G0014578.1 mouse_genomes_project 9 75857809 75857969 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092784.1 MGP_C57BL6NJ_G0035270.1 mouse_genomes_project 9 50790987 50797841 - MGP_C57BL6NJ_P0092784 Pts protein_coding protein_coding MGP_C57BL6NJ_T0016496.1 MGP_C57BL6NJ_G0014541.1 mouse_genomes_project 9 32788828 32789060 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092365.1 MGP_C57BL6NJ_G0035105.1 mouse_genomes_project 9 38020404 38024472 + MGP_C57BL6NJ_P0092365 Olfr920 protein_coding protein_coding MGP_C57BL6NJ_T0091602.1 MGP_C57BL6NJ_G0034805.1 mouse_genomes_project 9 2205791 2214562 + MGP_C57BL6NJ_P0091602 Casp1 protein_coding protein_coding MGP_C57BL6NJ_T0095837.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128783233 128812627 + MGP_C57BL6NJ_P0095837 Abhd5 protein_coding protein_coding MGP_C57BL6NJ_T0095838.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128783355 128812627 + MGP_C57BL6NJ_P0095838 Abhd5 protein_coding protein_coding MGP_C57BL6NJ_T0095839.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128783355 128810928 + MGP_C57BL6NJ_P0095839 Abhd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095840.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128783357 128791092 + Abhd5 protein_coding processed_transcript MGP_C57BL6NJ_T0095841.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128783357 128809035 + MGP_C57BL6NJ_P0095841 Abhd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095842.1 MGP_C57BL6NJ_G0035960.1 mouse_genomes_project 9 128794664 128799332 + MGP_C57BL6NJ_P0095842 Abhd5 protein_coding protein_coding MGP_C57BL6NJ_T0093653.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74512953 74556421 - MGP_C57BL6NJ_P0093653 Tex9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093654.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74521131 74556421 - MGP_C57BL6NJ_P0093654 Tex9 protein_coding protein_coding MGP_C57BL6NJ_T0093655.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74522903 74538628 - Tex9 protein_coding retained_intron MGP_C57BL6NJ_T0093656.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74523634 74556677 - MGP_C57BL6NJ_P0093656 Tex9 protein_coding protein_coding MGP_C57BL6NJ_T0093657.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74523662 74556672 - MGP_C57BL6NJ_P0093657 Tex9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093658.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74523738 74556566 - MGP_C57BL6NJ_P0093658 Tex9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093659.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74523760 74556462 - MGP_C57BL6NJ_P0093659 Tex9 protein_coding protein_coding MGP_C57BL6NJ_T0093660.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74524485 74556426 - Tex9 protein_coding retained_intron MGP_C57BL6NJ_T0093661.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74524504 74544807 - Tex9 protein_coding processed_transcript MGP_C57BL6NJ_T0093662.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74524534 74552540 - MGP_C57BL6NJ_P0093662 Tex9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093663.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74542240 74543107 - Tex9 protein_coding retained_intron MGP_C57BL6NJ_T0093664.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74542340 74551299 - MGP_C57BL6NJ_P0093664 Tex9 protein_coding protein_coding MGP_C57BL6NJ_T0093665.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74542341 74556404 - MGP_C57BL6NJ_P0093665 Tex9 protein_coding protein_coding MGP_C57BL6NJ_T0093666.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74544743 74556554 - Tex9 protein_coding retained_intron MGP_C57BL6NJ_T0093667.1 MGP_C57BL6NJ_G0035507.1 mouse_genomes_project 9 74544922 74556400 - Tex9 protein_coding retained_intron MGP_C57BL6NJ_T0016535.1 MGP_C57BL6NJ_G0014580.1 mouse_genomes_project 9 76828802 76828992 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095136.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113538101 113547633 + MGP_C57BL6NJ_P0095136 protein_coding protein_coding MGP_C57BL6NJ_T0095137.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113538254 113541037 + MGP_C57BL6NJ_P0095137 protein_coding protein_coding MGP_C57BL6NJ_T0095138.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113538285 113539479 + protein_coding retained_intron MGP_C57BL6NJ_T0095139.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113538295 113540153 + protein_coding retained_intron MGP_C57BL6NJ_T0095140.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113538349 113547627 + MGP_C57BL6NJ_P0095140 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095141.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113547248 113547618 + protein_coding retained_intron MGP_C57BL6NJ_T0095142.1 MGP_C57BL6NJ_G0035797.1 mouse_genomes_project 9 113547252 113547613 + protein_coding retained_intron MGP_C57BL6NJ_T0093227.1 MGP_C57BL6NJ_G0035404.1 mouse_genomes_project 9 61869492 61957381 + MGP_C57BL6NJ_P0093227 Uaca protein_coding protein_coding MGP_C57BL6NJ_T0100730.1 MGP_C57BL6NJ_G0038776.1 mouse_genomes_project 9 78340142 78340226 - Gm25300 snRNA snRNA MGP_C57BL6NJ_T0092330.1 MGP_C57BL6NJ_G0035076.1 mouse_genomes_project 9 37265406 37266336 + MGP_C57BL6NJ_P0092330 Olfr887 protein_coding protein_coding MGP_C57BL6NJ_T0005591.1 MGP_C57BL6NJ_G0004732.1 mouse_genomes_project 9 40176987 40177756 - Gm16095 antisense antisense MGP_C57BL6NJ_T0093083.1 MGP_C57BL6NJ_G0035370.1 mouse_genomes_project 9 58572481 58589394 - MGP_C57BL6NJ_P0093083 Clk3 protein_coding protein_coding MGP_C57BL6NJ_T0002513.1 MGP_C57BL6NJ_G0002401.1 mouse_genomes_project 9 74408022 74409581 + TEC TEC MGP_C57BL6NJ_T0093693.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112337 75144409 + MGP_C57BL6NJ_P0093693 Ccpg1 protein_coding protein_coding MGP_C57BL6NJ_T0093694.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112412 75129808 + MGP_C57BL6NJ_P0093694 Ccpg1 protein_coding protein_coding MGP_C57BL6NJ_T0093695.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112486 75142007 + MGP_C57BL6NJ_P0093695 Ccpg1 protein_coding protein_coding MGP_C57BL6NJ_T0093696.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112494 75114989 + Ccpg1 protein_coding retained_intron MGP_C57BL6NJ_T0093697.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112513 75144069 + MGP_C57BL6NJ_P0093697 Ccpg1 protein_coding protein_coding MGP_C57BL6NJ_T0093698.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112513 75144407 + MGP_C57BL6NJ_P0093698 Ccpg1 protein_coding protein_coding MGP_C57BL6NJ_T0093699.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112516 75130080 + Ccpg1 protein_coding retained_intron MGP_C57BL6NJ_T0093700.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75112527 75142000 + MGP_C57BL6NJ_P0093700 Ccpg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093703.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75137956 75140046 + Ccpg1 protein_coding retained_intron MGP_C57BL6NJ_T0093706.1 MGP_C57BL6NJ_G0035515.1 mouse_genomes_project 9 75143041 75144409 + Ccpg1 protein_coding retained_intron MGP_C57BL6NJ_T0002501.1 MGP_C57BL6NJ_G0002389.1 mouse_genomes_project 9 56966125 56967694 + TEC TEC MGP_C57BL6NJ_T0016519.1 MGP_C57BL6NJ_G0014564.1 mouse_genomes_project 9 66792761 66793149 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016527.1 MGP_C57BL6NJ_G0014572.1 mouse_genomes_project 9 74260143 74260760 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002548.1 MGP_C57BL6NJ_G0002435.1 mouse_genomes_project 9 92637456 92666295 + TEC TEC MGP_C57BL6NJ_T0019034.1 MGP_C57BL6NJ_G0016147.1 mouse_genomes_project 9 100800034 100808012 + C430002N11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019035.1 MGP_C57BL6NJ_G0016147.1 mouse_genomes_project 9 100800047 100808807 + C430002N11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019036.1 MGP_C57BL6NJ_G0016147.1 mouse_genomes_project 9 100800047 100818047 + C430002N11Rik processed_transcript lincRNA MGP_C57BL6NJ_T0019037.1 MGP_C57BL6NJ_G0016147.1 mouse_genomes_project 9 100800057 100808024 + C430002N11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019038.1 MGP_C57BL6NJ_G0016147.1 mouse_genomes_project 9 100800073 100807703 + C430002N11Rik processed_transcript lincRNA MGP_C57BL6NJ_T0009489.1 MGP_C57BL6NJ_G0007624.1 mouse_genomes_project 9 95962041 95966523 - Gm29139 lincRNA lincRNA MGP_C57BL6NJ_T0093578.1 MGP_C57BL6NJ_G0035497.1 mouse_genomes_project 9 72796241 72936638 - MGP_C57BL6NJ_P0093578 Lipc protein_coding protein_coding MGP_C57BL6NJ_T0093579.1 MGP_C57BL6NJ_G0035497.1 mouse_genomes_project 9 72796379 72826915 - MGP_C57BL6NJ_P0093579 Lipc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093580.1 MGP_C57BL6NJ_G0035497.1 mouse_genomes_project 9 72796379 72835068 - MGP_C57BL6NJ_P0093580 Lipc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093581.1 MGP_C57BL6NJ_G0035497.1 mouse_genomes_project 9 72796379 72835017 - MGP_C57BL6NJ_P0093581 Lipc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093361.1 MGP_C57BL6NJ_G0035438.1 mouse_genomes_project 9 66432702 66461135 + MGP_C57BL6NJ_P0093361 Vwa9 protein_coding protein_coding MGP_C57BL6NJ_T0093362.1 MGP_C57BL6NJ_G0035438.1 mouse_genomes_project 9 66432807 66461135 + MGP_C57BL6NJ_P0093362 Vwa9 protein_coding protein_coding MGP_C57BL6NJ_T0002546.1 MGP_C57BL6NJ_G0002433.1 mouse_genomes_project 9 91016508 91018337 - TEC TEC MGP_C57BL6NJ_T0093716.1 MGP_C57BL6NJ_G0035518.1 mouse_genomes_project 9 75236200 75237252 + MGP_C57BL6NJ_P0093716 Khdc3 protein_coding protein_coding MGP_C57BL6NJ_T0093717.1 MGP_C57BL6NJ_G0035518.1 mouse_genomes_project 9 75236762 75238803 + MGP_C57BL6NJ_P0093717 Khdc3 protein_coding protein_coding MGP_C57BL6NJ_T0093718.1 MGP_C57BL6NJ_G0035518.1 mouse_genomes_project 9 75236762 75238803 + MGP_C57BL6NJ_P0093718 Khdc3 protein_coding protein_coding MGP_C57BL6NJ_T0093720.1 MGP_C57BL6NJ_G0035518.1 mouse_genomes_project 9 75236874 75238557 + MGP_C57BL6NJ_P0093720 Khdc3 protein_coding protein_coding MGP_C57BL6NJ_T0092235.1 MGP_C57BL6NJ_G0035043.1 mouse_genomes_project 9 35616349 35617707 - MGP_C57BL6NJ_P0092235 Gm17689 protein_coding protein_coding MGP_C57BL6NJ_T0092009.1 MGP_C57BL6NJ_G0034965.1 mouse_genomes_project 9 20113643 20129533 - MGP_C57BL6NJ_P0092009 Zfp653 protein_coding protein_coding MGP_C57BL6NJ_T0092010.1 MGP_C57BL6NJ_G0034965.1 mouse_genomes_project 9 20113643 20129533 - MGP_C57BL6NJ_P0092010 Zfp653 protein_coding protein_coding MGP_C57BL6NJ_T0002509.1 MGP_C57BL6NJ_G0002397.1 mouse_genomes_project 9 74041335 74043761 - TEC TEC MGP_C57BL6NJ_T0092888.1 MGP_C57BL6NJ_G0035300.1 mouse_genomes_project 9 53789331 53873616 + MGP_C57BL6NJ_P0092888 Exph5 protein_coding protein_coding MGP_C57BL6NJ_T0092889.1 MGP_C57BL6NJ_G0035300.1 mouse_genomes_project 9 53834598 53865059 + Exph5 protein_coding retained_intron MGP_C57BL6NJ_T0092890.1 MGP_C57BL6NJ_G0035300.1 mouse_genomes_project 9 53834703 53849149 + Exph5 protein_coding retained_intron MGP_C57BL6NJ_T0093327.1 MGP_C57BL6NJ_G0035429.1 mouse_genomes_project 9 65557700 65564266 + MGP_C57BL6NJ_P0093327 Snapc5 protein_coding protein_coding MGP_C57BL6NJ_T0009517.1 MGP_C57BL6NJ_G0007646.1 mouse_genomes_project 9 110866824 110868047 - Gm29208 lincRNA lincRNA MGP_C57BL6NJ_T0005643.1 MGP_C57BL6NJ_G0004767.1 mouse_genomes_project 9 82406968 82409100 + 4930562D21Rik antisense antisense MGP_C57BL6NJ_T0095481.1 MGP_C57BL6NJ_G0035860.1 mouse_genomes_project 9 116150741 116168689 - MGP_C57BL6NJ_P0095481 Tmie protein_coding protein_coding MGP_C57BL6NJ_T0095482.1 MGP_C57BL6NJ_G0035860.1 mouse_genomes_project 9 116164017 116167881 - Tmie protein_coding processed_transcript MGP_C57BL6NJ_T0095483.1 MGP_C57BL6NJ_G0035860.1 mouse_genomes_project 9 116164065 116164611 - Tmie protein_coding retained_intron MGP_C57BL6NJ_T0009514.1 MGP_C57BL6NJ_G0007644.1 mouse_genomes_project 9 108482875 108526528 - Gm29154 lincRNA lincRNA MGP_C57BL6NJ_T0009515.1 MGP_C57BL6NJ_G0007644.1 mouse_genomes_project 9 108482978 108525814 - Gm29154 lincRNA lincRNA MGP_C57BL6NJ_T0095876.1 MGP_C57BL6NJ_G0035973.1 mouse_genomes_project 9 129666995 129673461 + MGP_C57BL6NJ_P0095876 Clec3b protein_coding protein_coding MGP_C57BL6NJ_T0093873.1 MGP_C57BL6NJ_G0035565.1 mouse_genomes_project 9 81271565 81388680 + MGP_C57BL6NJ_P0093873 Cd109 protein_coding protein_coding MGP_C57BL6NJ_T0093874.1 MGP_C57BL6NJ_G0035565.1 mouse_genomes_project 9 81271782 81274109 + Cd109 protein_coding processed_transcript MGP_C57BL6NJ_T0095746.1 MGP_C57BL6NJ_G0035934.1 mouse_genomes_project 9 126496760 126690689 + MGP_C57BL6NJ_P0095746 Myrip protein_coding protein_coding MGP_C57BL6NJ_T0095747.1 MGP_C57BL6NJ_G0035934.1 mouse_genomes_project 9 126595324 126636251 + MGP_C57BL6NJ_P0095747 Myrip protein_coding protein_coding MGP_C57BL6NJ_T0095748.1 MGP_C57BL6NJ_G0035934.1 mouse_genomes_project 9 126621311 126628798 + Myrip protein_coding processed_transcript MGP_C57BL6NJ_T0095749.1 MGP_C57BL6NJ_G0035934.1 mouse_genomes_project 9 126638995 126644073 + Myrip protein_coding processed_transcript MGP_C57BL6NJ_T0092773.1 MGP_C57BL6NJ_G0035266.1 mouse_genomes_project 9 49633505 49682635 - MGP_C57BL6NJ_P0092773 Ttc12 protein_coding protein_coding MGP_C57BL6NJ_T0092774.1 MGP_C57BL6NJ_G0035266.1 mouse_genomes_project 9 49654090 49682625 - Ttc12 protein_coding retained_intron MGP_C57BL6NJ_T0002490.1 MGP_C57BL6NJ_G0002378.1 mouse_genomes_project 9 28609416 28655550 - TEC TEC MGP_C57BL6NJ_T0016613.1 MGP_C57BL6NJ_G0014658.1 mouse_genomes_project 9 105757190 105757443 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005599.1 MGP_C57BL6NJ_G0004738.1 mouse_genomes_project 9 45734318 45735907 - Gm16536 antisense antisense MGP_C57BL6NJ_T0011337.1 MGP_C57BL6NJ_G0009422.1 mouse_genomes_project 9 69490137 69490201 - Mir7241 miRNA miRNA MGP_C57BL6NJ_T0091807.1 MGP_C57BL6NJ_G0034873.1 mouse_genomes_project 9 16429995 16431049 - MGP_C57BL6NJ_P0091807 Olfr24 protein_coding protein_coding MGP_C57BL6NJ_T0095046.1 MGP_C57BL6NJ_G0035786.1 mouse_genomes_project 9 113285314 113286214 + Gpx1 protein_coding retained_intron MGP_C57BL6NJ_T0095047.1 MGP_C57BL6NJ_G0035786.1 mouse_genomes_project 9 113285465 113286755 + MGP_C57BL6NJ_P0095047 Gpx1 protein_coding protein_coding MGP_C57BL6NJ_T0095048.1 MGP_C57BL6NJ_G0035786.1 mouse_genomes_project 9 113285654 113286662 + MGP_C57BL6NJ_P0095048 Gpx1 protein_coding protein_coding MGP_C57BL6NJ_T0095049.1 MGP_C57BL6NJ_G0035786.1 mouse_genomes_project 9 113285687 113286662 + MGP_C57BL6NJ_P0095049 Gpx1 protein_coding protein_coding MGP_C57BL6NJ_T0091908.1 MGP_C57BL6NJ_G0034925.1 mouse_genomes_project 9 18924309 18938289 + MGP_C57BL6NJ_P0091908 Icam1 protein_coding protein_coding MGP_C57BL6NJ_T0095788.1 MGP_C57BL6NJ_G0035945.1 mouse_genomes_project 9 128043631 128070251 - MGP_C57BL6NJ_P0095788 Sec22c protein_coding protein_coding MGP_C57BL6NJ_T0095789.1 MGP_C57BL6NJ_G0035945.1 mouse_genomes_project 9 128047694 128070687 - MGP_C57BL6NJ_P0095789 Sec22c protein_coding protein_coding MGP_C57BL6NJ_T0095790.1 MGP_C57BL6NJ_G0035945.1 mouse_genomes_project 9 128049223 128070201 - MGP_C57BL6NJ_P0095790 Sec22c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095791.1 MGP_C57BL6NJ_G0035945.1 mouse_genomes_project 9 128052870 128055146 - Sec22c protein_coding retained_intron MGP_C57BL6NJ_T0095792.1 MGP_C57BL6NJ_G0035945.1 mouse_genomes_project 9 128060288 128070712 - MGP_C57BL6NJ_P0095792 Sec22c protein_coding protein_coding MGP_C57BL6NJ_T0091827.1 MGP_C57BL6NJ_G0034893.1 mouse_genomes_project 9 17360677 17386922 + MGP_C57BL6NJ_P0091827 Zfp317 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095822.1 MGP_C57BL6NJ_G0035955.1 mouse_genomes_project 9 128327745 128338645 + MGP_C57BL6NJ_P0095822 1700048O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0095615.1 MGP_C57BL6NJ_G0035891.1 mouse_genomes_project 9 120346958 120387406 + MGP_C57BL6NJ_P0095615 Dync1li1 protein_coding protein_coding MGP_C57BL6NJ_T0095750.1 MGP_C57BL6NJ_G0035935.1 mouse_genomes_project 9 126708593 126711315 + MGP_C57BL6NJ_P0095750 Eif1b protein_coding protein_coding MGP_C57BL6NJ_T0093334.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65717077 65755849 - MGP_C57BL6NJ_P0093334 Dis3l protein_coding protein_coding MGP_C57BL6NJ_T0093335.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65717077 65755153 - MGP_C57BL6NJ_P0093335 Dis3l protein_coding protein_coding MGP_C57BL6NJ_T0093336.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65717109 65755827 - MGP_C57BL6NJ_P0093336 Dis3l protein_coding protein_coding MGP_C57BL6NJ_T0093337.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65734504 65755852 - Dis3l protein_coding retained_intron MGP_C57BL6NJ_T0093338.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65744215 65751293 - MGP_C57BL6NJ_P0093338 Dis3l protein_coding protein_coding MGP_C57BL6NJ_T0093339.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65751328 65755459 - Dis3l protein_coding processed_transcript MGP_C57BL6NJ_T0093340.1 MGP_C57BL6NJ_G0035433.1 mouse_genomes_project 9 65754152 65755953 - Dis3l protein_coding retained_intron MGP_C57BL6NJ_T0002545.1 MGP_C57BL6NJ_G0002432.1 mouse_genomes_project 9 91005501 91008307 + TEC TEC MGP_C57BL6NJ_T0012010.1 MGP_C57BL6NJ_G0010095.1 mouse_genomes_project 9 107497507 107497829 + Gm25842 misc_RNA misc_RNA MGP_C57BL6NJ_T0011296.1 MGP_C57BL6NJ_G0009381.1 mouse_genomes_project 9 4824417 4824468 + Mir5618 miRNA miRNA MGP_C57BL6NJ_T0100697.1 MGP_C57BL6NJ_G0038743.1 mouse_genomes_project 9 31224647 31224754 - Gm22060 snRNA snRNA MGP_C57BL6NJ_T0092351.1 MGP_C57BL6NJ_G0035097.1 mouse_genomes_project 9 37788208 37788978 + MGP_C57BL6NJ_P0092351 protein_coding protein_coding MGP_C57BL6NJ_T0092321.1 MGP_C57BL6NJ_G0035068.1 mouse_genomes_project 9 36973472 36974520 + MGP_C57BL6NJ_P0092321 Olfr876 protein_coding protein_coding MGP_C57BL6NJ_T0100706.1 MGP_C57BL6NJ_G0038752.1 mouse_genomes_project 9 46568578 46568685 - Gm22805 snRNA snRNA MGP_C57BL6NJ_T0005694.1 MGP_C57BL6NJ_G0004801.1 mouse_genomes_project 9 112308680 112309762 - Gm17118 antisense antisense MGP_C57BL6NJ_T0016547.1 MGP_C57BL6NJ_G0014592.1 mouse_genomes_project 9 79783327 79783729 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005601.1 MGP_C57BL6NJ_G0004740.1 mouse_genomes_project 9 50755502 50777126 - Plet1os antisense antisense MGP_C57BL6NJ_T0005602.1 MGP_C57BL6NJ_G0004740.1 mouse_genomes_project 9 50755506 50774108 - Plet1os antisense antisense MGP_C57BL6NJ_T0092391.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38936883 38957009 - MGP_C57BL6NJ_P0092391 AW551984 protein_coding protein_coding MGP_C57BL6NJ_T0092392.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38936997 38956572 - MGP_C57BL6NJ_P0092392 AW551984 protein_coding protein_coding MGP_C57BL6NJ_T0092393.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38938449 38940479 - AW551984 protein_coding retained_intron MGP_C57BL6NJ_T0092394.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38940084 38941739 - AW551984 protein_coding retained_intron MGP_C57BL6NJ_T0092395.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38952542 38957288 - MGP_C57BL6NJ_P0092395 AW551984 protein_coding protein_coding MGP_C57BL6NJ_T0092396.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38953179 38956512 - AW551984 protein_coding retained_intron MGP_C57BL6NJ_T0092397.1 MGP_C57BL6NJ_G0035131.1 mouse_genomes_project 9 38953441 38956263 - MGP_C57BL6NJ_P0092397 AW551984 protein_coding protein_coding MGP_C57BL6NJ_T0009415.1 MGP_C57BL6NJ_G0007566.1 mouse_genomes_project 9 34813015 35123291 - lincRNA lincRNA MGP_C57BL6NJ_T0009416.1 MGP_C57BL6NJ_G0007566.1 mouse_genomes_project 9 34813056 35123343 - lincRNA lincRNA MGP_C57BL6NJ_T0016497.1 MGP_C57BL6NJ_G0014542.1 mouse_genomes_project 9 33073125 33073687 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002605.1 MGP_C57BL6NJ_G0002492.1 mouse_genomes_project 9 113837595 113837937 + TEC TEC MGP_C57BL6NJ_T0002615.1 MGP_C57BL6NJ_G0002502.1 mouse_genomes_project 9 116757792 116759272 + TEC TEC MGP_C57BL6NJ_T0101983.1 MGP_C57BL6NJ_G0040029.1 mouse_genomes_project 9 12698439 12698572 + Gm22620 snoRNA snoRNA MGP_C57BL6NJ_T0102044.1 MGP_C57BL6NJ_G0040090.1 mouse_genomes_project 9 113386868 113386977 - Gm25456 snoRNA snoRNA MGP_C57BL6NJ_T0002614.1 MGP_C57BL6NJ_G0002501.1 mouse_genomes_project 9 116383300 116383713 - TEC TEC MGP_C57BL6NJ_T0016584.1 MGP_C57BL6NJ_G0014629.1 mouse_genomes_project 9 96008341 96008869 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092882.1 MGP_C57BL6NJ_G0035296.1 mouse_genomes_project 9 52433719 52477586 + MGP_C57BL6NJ_P0092882 Rdx protein_coding protein_coding MGP_C57BL6NJ_T0092883.1 MGP_C57BL6NJ_G0035296.1 mouse_genomes_project 9 52434510 52477586 + MGP_C57BL6NJ_P0092883 Rdx protein_coding protein_coding MGP_C57BL6NJ_T0092884.1 MGP_C57BL6NJ_G0035296.1 mouse_genomes_project 9 52434510 52462921 + MGP_C57BL6NJ_P0092884 Rdx protein_coding protein_coding MGP_C57BL6NJ_T0002593.1 MGP_C57BL6NJ_G0002480.1 mouse_genomes_project 9 109731011 109734256 + TEC TEC MGP_C57BL6NJ_T0016521.1 MGP_C57BL6NJ_G0014566.1 mouse_genomes_project 9 72856273 72859005 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002506.1 MGP_C57BL6NJ_G0002394.1 mouse_genomes_project 9 73937065 73939806 - TEC TEC MGP_C57BL6NJ_T0092178.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120585 34127316 - MGP_C57BL6NJ_P0092178 Foxred1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092179.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120587 34127334 - Foxred1 protein_coding retained_intron MGP_C57BL6NJ_T0092180.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120587 34127350 - Foxred1 protein_coding retained_intron MGP_C57BL6NJ_T0092181.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120587 34127360 - MGP_C57BL6NJ_P0092181 Foxred1 protein_coding protein_coding MGP_C57BL6NJ_T0092182.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120587 34127381 - MGP_C57BL6NJ_P0092182 Foxred1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092183.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34120587 34127435 - MGP_C57BL6NJ_P0092183 Foxred1 protein_coding protein_coding MGP_C57BL6NJ_T0092184.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34121245 34122302 - Foxred1 protein_coding retained_intron MGP_C57BL6NJ_T0092185.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34121564 34122614 - MGP_C57BL6NJ_P0092185 Foxred1 protein_coding protein_coding MGP_C57BL6NJ_T0092186.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34122466 34127326 - Foxred1 protein_coding retained_intron MGP_C57BL6NJ_T0092187.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34122602 34127376 - MGP_C57BL6NJ_P0092187 Foxred1 protein_coding protein_coding MGP_C57BL6NJ_T0092188.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34123917 34127302 - MGP_C57BL6NJ_P0092188 Foxred1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092189.1 MGP_C57BL6NJ_G0035022.1 mouse_genomes_project 9 34123927 34127277 - MGP_C57BL6NJ_P0092189 Foxred1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009506.1 MGP_C57BL6NJ_G0007636.1 mouse_genomes_project 9 104335694 104349055 + 4930519F24Rik lincRNA lincRNA MGP_C57BL6NJ_T0093332.1 MGP_C57BL6NJ_G0035431.1 mouse_genomes_project 9 65623921 65625083 + MGP_C57BL6NJ_P0093332 Uchl4 protein_coding protein_coding MGP_C57BL6NJ_T0092325.1 MGP_C57BL6NJ_G0035072.1 mouse_genomes_project 9 37170010 37170958 + MGP_C57BL6NJ_P0092325 Olfr881 protein_coding protein_coding MGP_C57BL6NJ_T0095332.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115020630 115038947 + MGP_C57BL6NJ_P0095332 Cdc25a protein_coding protein_coding MGP_C57BL6NJ_T0095333.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115020991 115026532 + MGP_C57BL6NJ_P0095333 Cdc25a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095334.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115021357 115037699 + MGP_C57BL6NJ_P0095334 Cdc25a protein_coding protein_coding MGP_C57BL6NJ_T0095336.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115029381 115035052 + Cdc25a protein_coding retained_intron MGP_C57BL6NJ_T0095337.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115032767 115037419 + Cdc25a protein_coding retained_intron MGP_C57BL6NJ_T0095338.1 MGP_C57BL6NJ_G0035837.1 mouse_genomes_project 9 115033887 115034422 + Cdc25a protein_coding retained_intron MGP_C57BL6NJ_T0091874.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18507188 18511086 + Ubl5 protein_coding retained_intron MGP_C57BL6NJ_T0091875.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18507628 18511275 + MGP_C57BL6NJ_P0091875 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091876.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18508381 18511088 + MGP_C57BL6NJ_P0091876 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091877.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18508650 18509960 + MGP_C57BL6NJ_P0091877 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091878.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509131 18511086 + MGP_C57BL6NJ_P0091878 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091879.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509144 18510217 + Ubl5 protein_coding retained_intron MGP_C57BL6NJ_T0091880.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509144 18511451 + MGP_C57BL6NJ_P0091880 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091881.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509145 18511086 + MGP_C57BL6NJ_P0091881 Ubl5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091882.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509178 18511080 + MGP_C57BL6NJ_P0091882 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091883.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509351 18511086 + MGP_C57BL6NJ_P0091883 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0091884.1 MGP_C57BL6NJ_G0034913.1 mouse_genomes_project 9 18509528 18511087 + MGP_C57BL6NJ_P0091884 Ubl5 protein_coding protein_coding MGP_C57BL6NJ_T0093690.1 MGP_C57BL6NJ_G0035513.1 mouse_genomes_project 9 75085190 75144388 + MGP_C57BL6NJ_P0093690 Gm44503 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016506.1 MGP_C57BL6NJ_G0014551.1 mouse_genomes_project 9 38215973 38216767 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092400.1 MGP_C57BL6NJ_G0035134.1 mouse_genomes_project 9 39005307 39006256 + MGP_C57BL6NJ_P0092400 Olfr961 protein_coding protein_coding MGP_C57BL6NJ_T0092954.1 MGP_C57BL6NJ_G0035325.1 mouse_genomes_project 9 55521451 55523451 - MGP_C57BL6NJ_P0092954 AY074887 protein_coding protein_coding MGP_C57BL6NJ_T0094957.1 MGP_C57BL6NJ_G0035771.1 mouse_genomes_project 9 112872050 112873707 - MGP_C57BL6NJ_P0094957 Fam212a protein_coding protein_coding MGP_C57BL6NJ_T0094958.1 MGP_C57BL6NJ_G0035771.1 mouse_genomes_project 9 112872460 112873460 - MGP_C57BL6NJ_P0094958 Fam212a protein_coding protein_coding MGP_C57BL6NJ_T0095080.1 MGP_C57BL6NJ_G0035792.1 mouse_genomes_project 9 113435362 113440774 + MGP_C57BL6NJ_P0095080 Ccdc71 protein_coding protein_coding MGP_C57BL6NJ_T0095081.1 MGP_C57BL6NJ_G0035792.1 mouse_genomes_project 9 113435370 113438103 + MGP_C57BL6NJ_P0095081 Ccdc71 protein_coding protein_coding MGP_C57BL6NJ_T0095082.1 MGP_C57BL6NJ_G0035792.1 mouse_genomes_project 9 113436255 113440642 + MGP_C57BL6NJ_P0095082 Ccdc71 protein_coding protein_coding MGP_C57BL6NJ_T0094241.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100712457 100787496 - MGP_C57BL6NJ_P0094241 Zbtb38 protein_coding protein_coding MGP_C57BL6NJ_T0094242.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100715119 100765188 - MGP_C57BL6NJ_P0094242 Zbtb38 protein_coding protein_coding MGP_C57BL6NJ_T0094243.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100715954 100750911 - MGP_C57BL6NJ_P0094243 Zbtb38 protein_coding non_stop_decay MGP_C57BL6NJ_T0094244.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100717094 100751361 - MGP_C57BL6NJ_P0094244 Zbtb38 protein_coding protein_coding MGP_C57BL6NJ_T0094245.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100718173 100750626 - MGP_C57BL6NJ_P0094245 Zbtb38 protein_coding protein_coding MGP_C57BL6NJ_T0094246.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100749270 100762549 - Zbtb38 protein_coding processed_transcript MGP_C57BL6NJ_T0094247.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100763363 100787350 - Zbtb38 protein_coding retained_intron MGP_C57BL6NJ_T0094248.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100763363 100764854 - Zbtb38 protein_coding processed_transcript MGP_C57BL6NJ_T0094249.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100764971 100766283 - Zbtb38 protein_coding processed_transcript MGP_C57BL6NJ_T0094250.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100765068 100766182 - Zbtb38 protein_coding retained_intron MGP_C57BL6NJ_T0094251.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100781945 100787392 - Zbtb38 protein_coding retained_intron MGP_C57BL6NJ_T0094252.1 MGP_C57BL6NJ_G0035640.1 mouse_genomes_project 9 100782143 100787358 - Zbtb38 protein_coding processed_transcript MGP_C57BL6NJ_T0005692.1 MGP_C57BL6NJ_G0004799.1 mouse_genomes_project 9 112157999 112159458 - Gm17041 antisense antisense MGP_C57BL6NJ_T0100734.1 MGP_C57BL6NJ_G0038780.1 mouse_genomes_project 9 87720295 87720459 + Gm26126 snRNA snRNA MGP_C57BL6NJ_T0092460.1 MGP_C57BL6NJ_G0035166.1 mouse_genomes_project 9 40391319 40459409 - MGP_C57BL6NJ_P0092460 Jhy protein_coding protein_coding MGP_C57BL6NJ_T0092461.1 MGP_C57BL6NJ_G0035166.1 mouse_genomes_project 9 40391321 40394089 - Jhy protein_coding retained_intron MGP_C57BL6NJ_T0092462.1 MGP_C57BL6NJ_G0035166.1 mouse_genomes_project 9 40456186 40457634 - MGP_C57BL6NJ_P0092462 Jhy protein_coding protein_coding MGP_C57BL6NJ_T0016548.1 MGP_C57BL6NJ_G0014593.1 mouse_genomes_project 9 80070235 80071436 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009485.1 MGP_C57BL6NJ_G0007620.1 mouse_genomes_project 9 93567305 93569100 + Gm26882 lincRNA lincRNA MGP_C57BL6NJ_T0092273.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35956843 36162870 - MGP_C57BL6NJ_P0092273 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092274.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35956843 36237211 - MGP_C57BL6NJ_P0092274 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092275.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35956846 36237236 - MGP_C57BL6NJ_P0092275 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092276.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35958339 36038277 - MGP_C57BL6NJ_P0092276 Pknox2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092277.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35958503 36162840 - Pknox2 protein_coding processed_transcript MGP_C57BL6NJ_T0092278.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 35989286 36162840 - Pknox2 protein_coding retained_intron MGP_C57BL6NJ_T0092279.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36002347 36162840 - Pknox2 protein_coding retained_intron MGP_C57BL6NJ_T0092280.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36004119 36162840 - MGP_C57BL6NJ_P0092280 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092281.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36004132 36223071 - MGP_C57BL6NJ_P0092281 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092282.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36004148 36237244 - MGP_C57BL6NJ_P0092282 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092283.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36023598 36233844 - MGP_C57BL6NJ_P0092283 Pknox2 protein_coding protein_coding MGP_C57BL6NJ_T0092284.1 MGP_C57BL6NJ_G0035050.1 mouse_genomes_project 9 36061959 36237188 - Pknox2 protein_coding processed_transcript MGP_C57BL6NJ_T0018964.1 MGP_C57BL6NJ_G0016124.1 mouse_genomes_project 9 12714055 12718828 + Gm16568 processed_transcript processed_transcript MGP_C57BL6NJ_T0091737.1 MGP_C57BL6NJ_G0034849.1 mouse_genomes_project 9 12119220 12121976 - MGP_C57BL6NJ_P0091737 Ankrd49 protein_coding protein_coding MGP_C57BL6NJ_T0093631.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327475 74394224 + MGP_C57BL6NJ_P0093631 Zfp280d protein_coding protein_coding MGP_C57BL6NJ_T0093632.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327502 74416740 + MGP_C57BL6NJ_P0093632 Zfp280d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093633.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327503 74417827 + MGP_C57BL6NJ_P0093633 Zfp280d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093634.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327511 74342508 + Zfp280d protein_coding processed_transcript MGP_C57BL6NJ_T0093635.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327575 74341196 + Zfp280d protein_coding processed_transcript MGP_C57BL6NJ_T0093636.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74327577 74352353 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093637.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74348465 74417845 + MGP_C57BL6NJ_P0093637 Zfp280d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093638.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74348497 74418100 + MGP_C57BL6NJ_P0093638 Zfp280d protein_coding protein_coding MGP_C57BL6NJ_T0093639.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74351904 74376181 + MGP_C57BL6NJ_P0093639 Zfp280d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093640.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74360274 74362381 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093641.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74365228 74366810 + Zfp280d protein_coding processed_transcript MGP_C57BL6NJ_T0093642.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74365268 74377240 + MGP_C57BL6NJ_P0093642 Zfp280d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093643.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74365790 74372888 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093644.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74376187 74382439 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093645.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74381378 74383467 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093646.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74384211 74387715 + Zfp280d protein_coding retained_intron MGP_C57BL6NJ_T0093647.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74384257 74416276 + MGP_C57BL6NJ_P0093647 Zfp280d protein_coding protein_coding MGP_C57BL6NJ_T0093648.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74391878 74416997 + MGP_C57BL6NJ_P0093648 Zfp280d protein_coding protein_coding MGP_C57BL6NJ_T0093649.1 MGP_C57BL6NJ_G0035505.1 mouse_genomes_project 9 74413144 74417956 + MGP_C57BL6NJ_P0093649 Zfp280d protein_coding protein_coding MGP_C57BL6NJ_T0095884.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130146589 130184632 - Slc6a20b protein_coding retained_intron MGP_C57BL6NJ_T0095885.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130146592 130184798 - MGP_C57BL6NJ_P0095885 Slc6a20b protein_coding protein_coding MGP_C57BL6NJ_T0095886.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130147592 130180795 - Slc6a20b protein_coding processed_transcript MGP_C57BL6NJ_T0095887.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130147598 130184560 - MGP_C57BL6NJ_P0095887 Slc6a20b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095888.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130161793 130184516 - MGP_C57BL6NJ_P0095888 Slc6a20b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095889.1 MGP_C57BL6NJ_G0035979.1 mouse_genomes_project 9 130163397 130184734 - Slc6a20b protein_coding processed_transcript MGP_C57BL6NJ_T0002535.1 MGP_C57BL6NJ_G0002423.1 mouse_genomes_project 9 86082460 86085217 + TEC TEC MGP_C57BL6NJ_T0093770.1 MGP_C57BL6NJ_G0035531.1 mouse_genomes_project 9 77766510 77791319 + MGP_C57BL6NJ_P0093770 Leo1 protein_coding protein_coding MGP_C57BL6NJ_T0094692.1 MGP_C57BL6NJ_G0035731.1 mouse_genomes_project 9 111309386 111310824 + MGP_C57BL6NJ_P0094692 Iqcf5 protein_coding protein_coding MGP_C57BL6NJ_T0095315.1 MGP_C57BL6NJ_G0035834.1 mouse_genomes_project 9 114949889 114959136 + MGP_C57BL6NJ_P0095315 Spink8 protein_coding protein_coding MGP_C57BL6NJ_T0095316.1 MGP_C57BL6NJ_G0035834.1 mouse_genomes_project 9 114955079 114965166 + MGP_C57BL6NJ_P0095316 Spink8 protein_coding protein_coding MGP_C57BL6NJ_T0095317.1 MGP_C57BL6NJ_G0035834.1 mouse_genomes_project 9 114955162 114965161 + MGP_C57BL6NJ_P0095317 Spink8 protein_coding protein_coding MGP_C57BL6NJ_T0005709.1 MGP_C57BL6NJ_G0004813.1 mouse_genomes_project 9 115150811 115153679 - Gm43732 antisense antisense MGP_C57BL6NJ_T0002491.1 MGP_C57BL6NJ_G0002379.1 mouse_genomes_project 9 31255053 31258084 - TEC TEC MGP_C57BL6NJ_T0091704.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11076133 11097680 - MGP_C57BL6NJ_P0091704 Cep57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091705.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11076136 11097741 - MGP_C57BL6NJ_P0091705 Cep57 protein_coding protein_coding MGP_C57BL6NJ_T0091706.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11076166 11097644 - MGP_C57BL6NJ_P0091706 Cep57 protein_coding protein_coding MGP_C57BL6NJ_T0091707.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11076890 11097714 - MGP_C57BL6NJ_P0091707 Cep57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091708.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11076948 11097589 - MGP_C57BL6NJ_P0091708 Cep57 protein_coding protein_coding MGP_C57BL6NJ_T0091709.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11077088 11078756 - Cep57 protein_coding retained_intron MGP_C57BL6NJ_T0091710.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11077157 11087007 - MGP_C57BL6NJ_P0091710 Cep57 protein_coding protein_coding MGP_C57BL6NJ_T0091711.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11079061 11087251 - MGP_C57BL6NJ_P0091711 Cep57 protein_coding protein_coding MGP_C57BL6NJ_T0091712.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11081397 11087287 - Cep57 protein_coding retained_intron MGP_C57BL6NJ_T0091713.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11081773 11097742 - MGP_C57BL6NJ_P0091713 Cep57 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091714.1 MGP_C57BL6NJ_G0034839.1 mouse_genomes_project 9 11081788 11084739 - Cep57 protein_coding retained_intron MGP_C57BL6NJ_T0094394.1 MGP_C57BL6NJ_G0035675.1 mouse_genomes_project 9 105486649 105514486 + MGP_C57BL6NJ_P0094394 Msl2 protein_coding protein_coding MGP_C57BL6NJ_T0094395.1 MGP_C57BL6NJ_G0035675.1 mouse_genomes_project 9 105487310 105517489 + MGP_C57BL6NJ_P0094395 Msl2 protein_coding protein_coding MGP_C57BL6NJ_T0092336.1 MGP_C57BL6NJ_G0035082.1 mouse_genomes_project 9 37425895 37426844 + MGP_C57BL6NJ_P0092336 Olfr894 protein_coding protein_coding MGP_C57BL6NJ_T0092407.1 MGP_C57BL6NJ_G0035141.1 mouse_genomes_project 9 39176796 39177732 + MGP_C57BL6NJ_P0092407 Olfr969 protein_coding protein_coding MGP_C57BL6NJ_T0102030.1 MGP_C57BL6NJ_G0040076.1 mouse_genomes_project 9 91150987 91151119 - Gm25528 snoRNA snoRNA MGP_C57BL6NJ_T0092416.1 MGP_C57BL6NJ_G0035150.1 mouse_genomes_project 9 39422211 39424949 - MGP_C57BL6NJ_P0092416 Olfr979 protein_coding protein_coding MGP_C57BL6NJ_T0091888.1 MGP_C57BL6NJ_G0034916.1 mouse_genomes_project 9 18649810 18696697 - MGP_C57BL6NJ_P0091888 Col5a3 protein_coding protein_coding MGP_C57BL6NJ_T0091889.1 MGP_C57BL6NJ_G0034916.1 mouse_genomes_project 9 18662395 18696697 - Col5a3 protein_coding retained_intron MGP_C57BL6NJ_T0092497.1 MGP_C57BL6NJ_G0035179.1 mouse_genomes_project 9 42965843 42991194 + MGP_C57BL6NJ_P0092497 Trim29 protein_coding protein_coding MGP_C57BL6NJ_T0092406.1 MGP_C57BL6NJ_G0035140.1 mouse_genomes_project 9 39152261 39153288 - MGP_C57BL6NJ_P0092406 Olfr968 protein_coding protein_coding MGP_C57BL6NJ_T0011358.1 MGP_C57BL6NJ_G0009443.1 mouse_genomes_project 9 113550367 113550441 + Mir191 miRNA miRNA MGP_C57BL6NJ_T0099181.1 MGP_C57BL6NJ_G0037245.1 mouse_genomes_project 9 90431133 90431267 + Gm24649 rRNA rRNA MGP_C57BL6NJ_T0094771.1 MGP_C57BL6NJ_G0035746.1 mouse_genomes_project 9 112400941 112405670 + MGP_C57BL6NJ_P0094771 Tmem115 protein_coding protein_coding MGP_C57BL6NJ_T0101985.1 MGP_C57BL6NJ_G0040031.1 mouse_genomes_project 9 12699971 12700071 + snoRNA snoRNA MGP_C57BL6NJ_T0093067.1 MGP_C57BL6NJ_G0035361.1 mouse_genomes_project 9 58341841 58350342 - MGP_C57BL6NJ_P0093067 Mpi protein_coding protein_coding MGP_C57BL6NJ_T0093068.1 MGP_C57BL6NJ_G0035361.1 mouse_genomes_project 9 58345842 58349845 - Mpi protein_coding retained_intron MGP_C57BL6NJ_T0093069.1 MGP_C57BL6NJ_G0035361.1 mouse_genomes_project 9 58346175 58347258 - Mpi protein_coding retained_intron MGP_C57BL6NJ_T0093070.1 MGP_C57BL6NJ_G0035361.1 mouse_genomes_project 9 58346715 58350288 - MGP_C57BL6NJ_P0093070 Mpi protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093071.1 MGP_C57BL6NJ_G0035361.1 mouse_genomes_project 9 58347554 58350295 - Mpi protein_coding retained_intron MGP_C57BL6NJ_T0092031.1 MGP_C57BL6NJ_G0034978.1 mouse_genomes_project 9 20567204 20574977 + MGP_C57BL6NJ_P0092031 Gm17545 protein_coding protein_coding MGP_C57BL6NJ_T0009412.1 MGP_C57BL6NJ_G0007563.1 mouse_genomes_project 9 32898409 32920412 + 7630403G23Rik lincRNA lincRNA MGP_C57BL6NJ_T0093060.1 MGP_C57BL6NJ_G0035354.1 mouse_genomes_project 9 58012119 58026435 + MGP_C57BL6NJ_P0093060 Trcg1 protein_coding protein_coding MGP_C57BL6NJ_T0094280.1 MGP_C57BL6NJ_G0035645.1 mouse_genomes_project 9 101530337 102156527 - MGP_C57BL6NJ_P0094280 Clstn2 protein_coding protein_coding MGP_C57BL6NJ_T0094281.1 MGP_C57BL6NJ_G0035645.1 mouse_genomes_project 9 101539199 102156329 - MGP_C57BL6NJ_P0094281 Clstn2 protein_coding protein_coding MGP_C57BL6NJ_T0100749.1 MGP_C57BL6NJ_G0038795.1 mouse_genomes_project 9 112788910 112789009 + Gm23856 snRNA snRNA MGP_C57BL6NJ_T0009421.1 MGP_C57BL6NJ_G0007569.1 mouse_genomes_project 9 35704043 35726835 - 1700027I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0005667.1 MGP_C57BL6NJ_G0004780.1 mouse_genomes_project 9 100736885 100742507 + A930006L05Rik antisense antisense MGP_C57BL6NJ_T0092026.1 MGP_C57BL6NJ_G0034973.1 mouse_genomes_project 9 20323295 20335598 - MGP_C57BL6NJ_P0092026 Zfp599 protein_coding protein_coding MGP_C57BL6NJ_T0095484.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116168445 116171298 + Als2cl protein_coding processed_transcript MGP_C57BL6NJ_T0095485.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116168749 116190348 + MGP_C57BL6NJ_P0095485 Als2cl protein_coding protein_coding MGP_C57BL6NJ_T0095486.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116168781 116190354 + MGP_C57BL6NJ_P0095486 Als2cl protein_coding protein_coding MGP_C57BL6NJ_T0095487.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116168808 116173456 + MGP_C57BL6NJ_P0095487 Als2cl protein_coding protein_coding MGP_C57BL6NJ_T0095488.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116168912 116190351 + MGP_C57BL6NJ_P0095488 Als2cl protein_coding protein_coding MGP_C57BL6NJ_T0095489.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116174323 116175898 + Als2cl protein_coding retained_intron MGP_C57BL6NJ_T0095490.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116174864 116179974 + Als2cl protein_coding retained_intron MGP_C57BL6NJ_T0095491.1 MGP_C57BL6NJ_G0035861.1 mouse_genomes_project 9 116177818 116190352 + Als2cl protein_coding processed_transcript MGP_C57BL6NJ_T0095065.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414634 113436417 - MGP_C57BL6NJ_P0095065 Klhdc8b protein_coding protein_coding MGP_C57BL6NJ_T0095066.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414656 113419717 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095067.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414656 113417803 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095068.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414656 113419376 - MGP_C57BL6NJ_P0095068 Klhdc8b protein_coding protein_coding MGP_C57BL6NJ_T0095069.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414830 113419403 - MGP_C57BL6NJ_P0095069 Klhdc8b protein_coding protein_coding MGP_C57BL6NJ_T0095070.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113414971 113435912 - MGP_C57BL6NJ_P0095070 Klhdc8b protein_coding protein_coding MGP_C57BL6NJ_T0095071.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113415266 113417368 - Klhdc8b protein_coding processed_transcript MGP_C57BL6NJ_T0095072.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113418253 113419765 - Klhdc8b protein_coding processed_transcript MGP_C57BL6NJ_T0095073.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113418274 113419800 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095074.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113419586 113435765 - Klhdc8b protein_coding processed_transcript MGP_C57BL6NJ_T0095075.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113421671 113435765 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095076.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113421673 113431786 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095077.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113421864 113435909 - Klhdc8b protein_coding processed_transcript MGP_C57BL6NJ_T0095078.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113433271 113434914 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095079.1 MGP_C57BL6NJ_G0035791.1 mouse_genomes_project 9 113434068 113435764 - Klhdc8b protein_coding retained_intron MGP_C57BL6NJ_T0095813.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128174072 128218427 - MGP_C57BL6NJ_P0095813 Ccdc13 protein_coding protein_coding MGP_C57BL6NJ_T0095814.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128174078 128187860 - MGP_C57BL6NJ_P0095814 Ccdc13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095815.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128174613 128188006 - Ccdc13 protein_coding retained_intron MGP_C57BL6NJ_T0095816.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128176256 128187842 - MGP_C57BL6NJ_P0095816 Ccdc13 protein_coding protein_coding MGP_C57BL6NJ_T0095817.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128176767 128187945 - Ccdc13 protein_coding retained_intron MGP_C57BL6NJ_T0095818.1 MGP_C57BL6NJ_G0035951.1 mouse_genomes_project 9 128195057 128208775 - Ccdc13 protein_coding retained_intron MGP_C57BL6NJ_T0009535.1 MGP_C57BL6NJ_G0007658.1 mouse_genomes_project 9 117638898 117640642 + 2900079G21Rik lincRNA lincRNA MGP_C57BL6NJ_T0009536.1 MGP_C57BL6NJ_G0007658.1 mouse_genomes_project 9 117638915 117693673 + 2900079G21Rik lincRNA lincRNA MGP_C57BL6NJ_T0009537.1 MGP_C57BL6NJ_G0007658.1 mouse_genomes_project 9 117639002 117640640 + 2900079G21Rik lincRNA lincRNA MGP_C57BL6NJ_T0009538.1 MGP_C57BL6NJ_G0007658.1 mouse_genomes_project 9 117663726 117764168 + 2900079G21Rik lincRNA lincRNA MGP_C57BL6NJ_T0092559.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138189 44151792 + MGP_C57BL6NJ_P0092559 Hyou1 protein_coding protein_coding MGP_C57BL6NJ_T0092560.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138245 44150927 + MGP_C57BL6NJ_P0092560 Hyou1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092561.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138256 44150140 + Hyou1 protein_coding retained_intron MGP_C57BL6NJ_T0092562.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138272 44151786 + MGP_C57BL6NJ_P0092562 Hyou1 protein_coding protein_coding MGP_C57BL6NJ_T0092563.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138283 44144770 + Hyou1 protein_coding retained_intron MGP_C57BL6NJ_T0092564.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44138322 44150506 + MGP_C57BL6NJ_P0092564 Hyou1 protein_coding protein_coding MGP_C57BL6NJ_T0092565.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44139228 44142848 + MGP_C57BL6NJ_P0092565 Hyou1 protein_coding protein_coding MGP_C57BL6NJ_T0092566.1 MGP_C57BL6NJ_G0035198.1 mouse_genomes_project 9 44150064 44150716 + Hyou1 protein_coding retained_intron MGP_C57BL6NJ_T0016611.1 MGP_C57BL6NJ_G0014656.1 mouse_genomes_project 9 105464772 105465136 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093436.1 MGP_C57BL6NJ_G0035462.1 mouse_genomes_project 9 67646866 67653095 + MGP_C57BL6NJ_P0093436 Ppib protein_coding protein_coding MGP_C57BL6NJ_T0094703.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111466912 111493801 - MGP_C57BL6NJ_P0094703 Tex264 protein_coding protein_coding MGP_C57BL6NJ_T0094704.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111466912 111493660 - MGP_C57BL6NJ_P0094704 Tex264 protein_coding protein_coding MGP_C57BL6NJ_T0094705.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111466918 111493893 - MGP_C57BL6NJ_P0094705 Tex264 protein_coding protein_coding MGP_C57BL6NJ_T0094706.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111467158 111472124 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0094707.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111467214 111493897 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0094708.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111467403 111493905 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0094709.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111470556 111493887 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0094710.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111486158 111493283 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0094711.1 MGP_C57BL6NJ_G0035735.1 mouse_genomes_project 9 111492910 111493881 - Tex264 protein_coding processed_transcript MGP_C57BL6NJ_T0005574.1 MGP_C57BL6NJ_G0004720.1 mouse_genomes_project 9 12041797 12056214 + Gm10706 antisense antisense MGP_C57BL6NJ_T0095606.1 MGP_C57BL6NJ_G0035882.1 mouse_genomes_project 9 119924546 119925209 + MGP_C57BL6NJ_P0095606 protein_coding protein_coding MGP_C57BL6NJ_T0016487.1 MGP_C57BL6NJ_G0014532.1 mouse_genomes_project 9 11754027 11755103 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095450.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886475 115952171 + MGP_C57BL6NJ_P0095450 Ccdc12 protein_coding protein_coding MGP_C57BL6NJ_T0095451.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886497 115887647 + Ccdc12 protein_coding retained_intron MGP_C57BL6NJ_T0095452.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886502 115940566 + Ccdc12 protein_coding retained_intron MGP_C57BL6NJ_T0095453.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886510 115951820 + MGP_C57BL6NJ_P0095453 Ccdc12 protein_coding protein_coding MGP_C57BL6NJ_T0095454.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886514 115949302 + Ccdc12 protein_coding retained_intron MGP_C57BL6NJ_T0095455.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115886584 115952078 + Ccdc12 protein_coding processed_transcript MGP_C57BL6NJ_T0095456.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115896968 115951850 + Ccdc12 protein_coding processed_transcript MGP_C57BL6NJ_T0095457.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115950458 115952152 + MGP_C57BL6NJ_P0095457 Ccdc12 protein_coding protein_coding MGP_C57BL6NJ_T0095458.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115950575 115952158 + Ccdc12 protein_coding retained_intron MGP_C57BL6NJ_T0095459.1 MGP_C57BL6NJ_G0035851.1 mouse_genomes_project 9 115950608 115952029 + Ccdc12 protein_coding retained_intron MGP_C57BL6NJ_T0094279.1 MGP_C57BL6NJ_G0035644.1 mouse_genomes_project 9 101419712 101443555 - MGP_C57BL6NJ_P0094279 Trim42 protein_coding protein_coding MGP_C57BL6NJ_T0093538.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71895762 71915642 + MGP_C57BL6NJ_P0093538 Bnip2 protein_coding protein_coding MGP_C57BL6NJ_T0093539.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71895800 71915580 + MGP_C57BL6NJ_P0093539 Bnip2 protein_coding protein_coding MGP_C57BL6NJ_T0093540.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71895811 71911299 + MGP_C57BL6NJ_P0093540 Bnip2 protein_coding protein_coding MGP_C57BL6NJ_T0093541.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71895813 71906450 + MGP_C57BL6NJ_P0093541 Bnip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093542.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71901774 71914440 + MGP_C57BL6NJ_P0093542 Bnip2 protein_coding protein_coding MGP_C57BL6NJ_T0093543.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71904467 71909530 + Bnip2 protein_coding retained_intron MGP_C57BL6NJ_T0093544.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71905523 71910929 + Bnip2 protein_coding processed_transcript MGP_C57BL6NJ_T0093545.1 MGP_C57BL6NJ_G0035486.1 mouse_genomes_project 9 71910670 71912055 + MGP_C57BL6NJ_P0093545 Bnip2 protein_coding protein_coding MGP_C57BL6NJ_T0095913.1 MGP_C57BL6NJ_G0035986.1 mouse_genomes_project 9 130533693 130540349 - MGP_C57BL6NJ_P0095913 Ccr1 protein_coding protein_coding MGP_C57BL6NJ_T0016603.1 MGP_C57BL6NJ_G0014648.1 mouse_genomes_project 9 101305397 101305683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094047.1 MGP_C57BL6NJ_G0035599.1 mouse_genomes_project 9 91609849 91655545 + MGP_C57BL6NJ_P0094047 Nt5e protein_coding protein_coding MGP_C57BL6NJ_T0094048.1 MGP_C57BL6NJ_G0035599.1 mouse_genomes_project 9 91610272 91613854 + Nt5e protein_coding retained_intron MGP_C57BL6NJ_T0094049.1 MGP_C57BL6NJ_G0035599.1 mouse_genomes_project 9 91610287 91651297 + Nt5e protein_coding retained_intron MGP_C57BL6NJ_T0091627.1 MGP_C57BL6NJ_G0034812.1 mouse_genomes_project 9 4286007 4296827 + MGP_C57BL6NJ_P0091627 Mmp13 protein_coding protein_coding MGP_C57BL6NJ_T0005716.1 MGP_C57BL6NJ_G0004820.1 mouse_genomes_project 9 124918479 124957623 - Gm2415 antisense antisense MGP_C57BL6NJ_T0005717.1 MGP_C57BL6NJ_G0004820.1 mouse_genomes_project 9 124918562 124957633 - Gm2415 antisense antisense MGP_C57BL6NJ_T0005718.1 MGP_C57BL6NJ_G0004820.1 mouse_genomes_project 9 124933300 124957622 - Gm2415 antisense antisense MGP_C57BL6NJ_T0005719.1 MGP_C57BL6NJ_G0004820.1 mouse_genomes_project 9 124955822 124957819 - Gm2415 antisense antisense MGP_C57BL6NJ_T0091806.1 MGP_C57BL6NJ_G0034872.1 mouse_genomes_project 9 16113639 16133261 - MGP_C57BL6NJ_P0091806 protein_coding protein_coding MGP_C57BL6NJ_T0094169.1 MGP_C57BL6NJ_G0035627.1 mouse_genomes_project 9 99269500 99276908 - MGP_C57BL6NJ_P0094169 Chst2 protein_coding protein_coding MGP_C57BL6NJ_T0095303.1 MGP_C57BL6NJ_G0035826.1 mouse_genomes_project 9 114408682 114484391 - MGP_C57BL6NJ_P0095303 protein_coding protein_coding MGP_C57BL6NJ_T0093141.1 MGP_C57BL6NJ_G0035380.1 mouse_genomes_project 9 59117930 59140396 + MGP_C57BL6NJ_P0093141 Stoml1 protein_coding protein_coding MGP_C57BL6NJ_T0095916.1 MGP_C57BL6NJ_G0035989.1 mouse_genomes_project 9 130675860 130687444 + MGP_C57BL6NJ_P0095916 Ccr2 protein_coding protein_coding MGP_C57BL6NJ_T0095917.1 MGP_C57BL6NJ_G0035989.1 mouse_genomes_project 9 130676068 130683027 + MGP_C57BL6NJ_P0095917 Ccr2 protein_coding protein_coding MGP_C57BL6NJ_T0095918.1 MGP_C57BL6NJ_G0035989.1 mouse_genomes_project 9 130676093 130682437 + MGP_C57BL6NJ_P0095918 Ccr2 protein_coding protein_coding MGP_C57BL6NJ_T0095919.1 MGP_C57BL6NJ_G0035989.1 mouse_genomes_project 9 130679512 130683027 + MGP_C57BL6NJ_P0095919 Ccr2 protein_coding protein_coding MGP_C57BL6NJ_T0009534.1 MGP_C57BL6NJ_G0007657.1 mouse_genomes_project 9 117632207 117632871 + 2310075C17Rik lincRNA lincRNA MGP_C57BL6NJ_T0092225.1 MGP_C57BL6NJ_G0035034.1 mouse_genomes_project 9 34715557 34728977 - MGP_C57BL6NJ_P0092225 Gm27235 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100690.1 MGP_C57BL6NJ_G0038736.1 mouse_genomes_project 9 16345335 16345437 + Gm24546 snRNA snRNA MGP_C57BL6NJ_T0016563.1 MGP_C57BL6NJ_G0014608.1 mouse_genomes_project 9 90361020 90361362 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009463.1 MGP_C57BL6NJ_G0007603.1 mouse_genomes_project 9 77112534 77157407 + Gm20649 lincRNA lincRNA MGP_C57BL6NJ_T0093011.1 MGP_C57BL6NJ_G0035340.1 mouse_genomes_project 9 56832351 56857520 - MGP_C57BL6NJ_P0093011 Tspan3 protein_coding protein_coding MGP_C57BL6NJ_T0091995.1 MGP_C57BL6NJ_G0034957.1 mouse_genomes_project 9 19952402 19960803 + MGP_C57BL6NJ_P0091995 Ccdc159 protein_coding protein_coding MGP_C57BL6NJ_T0091996.1 MGP_C57BL6NJ_G0034957.1 mouse_genomes_project 9 19952402 19960803 + MGP_C57BL6NJ_P0091996 Ccdc159 protein_coding protein_coding MGP_C57BL6NJ_T0093299.1 MGP_C57BL6NJ_G0035424.1 mouse_genomes_project 9 64976950 65091751 - MGP_C57BL6NJ_P0093299 Smad3 protein_coding protein_coding MGP_C57BL6NJ_T0093300.1 MGP_C57BL6NJ_G0035424.1 mouse_genomes_project 9 64984954 64996725 - MGP_C57BL6NJ_P0093300 Smad3 protein_coding protein_coding MGP_C57BL6NJ_T0093301.1 MGP_C57BL6NJ_G0035424.1 mouse_genomes_project 9 64984982 65044600 - MGP_C57BL6NJ_P0093301 Smad3 protein_coding protein_coding MGP_C57BL6NJ_T0093302.1 MGP_C57BL6NJ_G0035424.1 mouse_genomes_project 9 64996325 65084834 - MGP_C57BL6NJ_P0093302 Smad3 protein_coding protein_coding MGP_C57BL6NJ_T0093303.1 MGP_C57BL6NJ_G0035424.1 mouse_genomes_project 9 64997990 65075818 - Smad3 protein_coding processed_transcript MGP_C57BL6NJ_T0092369.1 MGP_C57BL6NJ_G0035109.1 mouse_genomes_project 9 38122651 38123700 + MGP_C57BL6NJ_P0092369 Olfr26 protein_coding protein_coding MGP_C57BL6NJ_T0002563.1 MGP_C57BL6NJ_G0002450.1 mouse_genomes_project 9 102051126 102052676 - TEC TEC MGP_C57BL6NJ_T0005665.1 MGP_C57BL6NJ_G0004778.1 mouse_genomes_project 9 99963161 99964633 - antisense antisense MGP_C57BL6NJ_T0011302.1 MGP_C57BL6NJ_G0009387.1 mouse_genomes_project 9 12698092 12698159 + miRNA miRNA MGP_C57BL6NJ_T0009448.1 MGP_C57BL6NJ_G0007591.1 mouse_genomes_project 9 65405200 65409470 + 1110036E04Rik lincRNA lincRNA MGP_C57BL6NJ_T0093747.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371277 77423072 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0093748.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371450 77531506 + MGP_C57BL6NJ_P0093748 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093749.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371468 77437158 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0093750.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371648 77526366 + MGP_C57BL6NJ_P0093750 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093751.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371827 77482102 + MGP_C57BL6NJ_P0093751 Myo5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093752.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77371862 77526769 + MGP_C57BL6NJ_P0093752 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093753.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77446807 77453406 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0093754.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77489728 77526300 + Myo5a protein_coding processed_transcript MGP_C57BL6NJ_T0093755.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77489791 77500761 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0093756.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77491439 77502861 + MGP_C57BL6NJ_P0093756 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093757.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77491538 77525809 + MGP_C57BL6NJ_P0093757 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093758.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77491540 77507980 + MGP_C57BL6NJ_P0093758 Myo5a protein_coding protein_coding MGP_C57BL6NJ_T0093759.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77496599 77499653 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0093760.1 MGP_C57BL6NJ_G0035526.1 mouse_genomes_project 9 77500433 77510413 + Myo5a protein_coding retained_intron MGP_C57BL6NJ_T0016601.1 MGP_C57BL6NJ_G0014646.1 mouse_genomes_project 9 101281099 101282936 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012002.1 MGP_C57BL6NJ_G0010087.1 mouse_genomes_project 9 55082630 55082848 + Gm25980 misc_RNA misc_RNA MGP_C57BL6NJ_T0093251.1 MGP_C57BL6NJ_G0035410.1 mouse_genomes_project 9 63247619 63260978 - MGP_C57BL6NJ_P0093251 Glce protein_coding protein_coding MGP_C57BL6NJ_T0093252.1 MGP_C57BL6NJ_G0035410.1 mouse_genomes_project 9 63247619 63314626 - MGP_C57BL6NJ_P0093252 Glce protein_coding protein_coding MGP_C57BL6NJ_T0093253.1 MGP_C57BL6NJ_G0035410.1 mouse_genomes_project 9 63250382 63261212 - Glce protein_coding retained_intron MGP_C57BL6NJ_T0093254.1 MGP_C57BL6NJ_G0035410.1 mouse_genomes_project 9 63260839 63314671 - MGP_C57BL6NJ_P0093254 Glce protein_coding protein_coding MGP_C57BL6NJ_T0093255.1 MGP_C57BL6NJ_G0035410.1 mouse_genomes_project 9 63270686 63314625 - Glce protein_coding processed_transcript MGP_C57BL6NJ_T0009440.1 MGP_C57BL6NJ_G0007585.1 mouse_genomes_project 9 59273433 59277115 + 1700072B07Rik lincRNA lincRNA MGP_C57BL6NJ_T0093537.1 MGP_C57BL6NJ_G0035485.1 mouse_genomes_project 9 71636659 71639890 - MGP_C57BL6NJ_P0093537 Foxb1 protein_coding protein_coding MGP_C57BL6NJ_T0092002.1 MGP_C57BL6NJ_G0034961.1 mouse_genomes_project 9 20002023 20019864 - MGP_C57BL6NJ_P0092002 Rgl3 protein_coding protein_coding MGP_C57BL6NJ_T0011996.1 MGP_C57BL6NJ_G0010081.1 mouse_genomes_project 9 35133 35217 - Gm27679 misc_RNA misc_RNA MGP_C57BL6NJ_T0009455.1 MGP_C57BL6NJ_G0007595.1 mouse_genomes_project 9 72093100 72123662 - Gm26849 lincRNA lincRNA MGP_C57BL6NJ_T0092950.1 MGP_C57BL6NJ_G0035324.1 mouse_genomes_project 9 55489668 55521146 + MGP_C57BL6NJ_P0092950 Hykk protein_coding protein_coding MGP_C57BL6NJ_T0092951.1 MGP_C57BL6NJ_G0035324.1 mouse_genomes_project 9 55489696 55498946 + Hykk protein_coding retained_intron MGP_C57BL6NJ_T0092952.1 MGP_C57BL6NJ_G0035324.1 mouse_genomes_project 9 55489697 55509362 + Hykk protein_coding retained_intron MGP_C57BL6NJ_T0092953.1 MGP_C57BL6NJ_G0035324.1 mouse_genomes_project 9 55489732 55491626 + Hykk protein_coding processed_transcript MGP_C57BL6NJ_T0095219.1 MGP_C57BL6NJ_G0035809.1 mouse_genomes_project 9 113878651 113879596 + MGP_C57BL6NJ_P0095219 Tmem89 protein_coding protein_coding MGP_C57BL6NJ_T0095220.1 MGP_C57BL6NJ_G0035809.1 mouse_genomes_project 9 113878651 113879596 + MGP_C57BL6NJ_P0095220 Tmem89 protein_coding protein_coding MGP_C57BL6NJ_T0009409.1 MGP_C57BL6NJ_G0007560.1 mouse_genomes_project 9 31703386 31729837 - Gm27162 lincRNA lincRNA MGP_C57BL6NJ_T0092193.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34133761 34182199 - MGP_C57BL6NJ_P0092193 Fam118b protein_coding protein_coding MGP_C57BL6NJ_T0092194.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34133816 34182224 - MGP_C57BL6NJ_P0092194 Fam118b protein_coding protein_coding MGP_C57BL6NJ_T0092195.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34133816 34182196 - MGP_C57BL6NJ_P0092195 Fam118b protein_coding protein_coding MGP_C57BL6NJ_T0092196.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34134031 34152375 - MGP_C57BL6NJ_P0092196 Fam118b protein_coding protein_coding MGP_C57BL6NJ_T0092197.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34138373 34182186 - MGP_C57BL6NJ_P0092197 Fam118b protein_coding protein_coding MGP_C57BL6NJ_T0092198.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34148995 34182199 - Fam118b protein_coding retained_intron MGP_C57BL6NJ_T0092199.1 MGP_C57BL6NJ_G0035023.1 mouse_genomes_project 9 34180746 34182199 - Fam118b protein_coding retained_intron MGP_C57BL6NJ_T0092334.1 MGP_C57BL6NJ_G0035080.1 mouse_genomes_project 9 37364811 37365762 - MGP_C57BL6NJ_P0092334 Olfr891 protein_coding protein_coding MGP_C57BL6NJ_T0092417.1 MGP_C57BL6NJ_G0035151.1 mouse_genomes_project 9 39431135 39433155 - MGP_C57BL6NJ_P0092417 Olfr980 protein_coding protein_coding MGP_C57BL6NJ_T0016549.1 MGP_C57BL6NJ_G0014594.1 mouse_genomes_project 9 81015096 81015663 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016572.1 MGP_C57BL6NJ_G0014617.1 mouse_genomes_project 9 91906741 91907035 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016501.1 MGP_C57BL6NJ_G0014546.1 mouse_genomes_project 9 35502389 35502588 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095355.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258414 115294573 - MGP_C57BL6NJ_P0095355 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095356.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258414 115294176 - MGP_C57BL6NJ_P0095356 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095357.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258414 115294165 - MGP_C57BL6NJ_P0095357 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095358.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258414 115276281 - MGP_C57BL6NJ_P0095358 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095359.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258415 115286901 - Dhx30 protein_coding retained_intron MGP_C57BL6NJ_T0095360.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258415 115291820 - MGP_C57BL6NJ_P0095360 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095361.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258415 115294180 - MGP_C57BL6NJ_P0095361 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095362.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258415 115259086 - MGP_C57BL6NJ_P0095362 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095363.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258415 115259145 - MGP_C57BL6NJ_P0095363 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095364.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258416 115294154 - MGP_C57BL6NJ_P0095364 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095365.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258417 115294078 - MGP_C57BL6NJ_P0095365 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095366.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115258612 115259610 - MGP_C57BL6NJ_P0095366 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095367.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115260413 115261549 - Dhx30 protein_coding retained_intron MGP_C57BL6NJ_T0095368.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115262037 115265565 - Dhx30 protein_coding retained_intron MGP_C57BL6NJ_T0095369.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115263894 115287357 - Dhx30 protein_coding retained_intron MGP_C57BL6NJ_T0095370.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115267053 115276233 - MGP_C57BL6NJ_P0095370 Dhx30 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095371.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115267161 115293527 - MGP_C57BL6NJ_P0095371 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095372.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115267203 115276232 - MGP_C57BL6NJ_P0095372 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095373.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115273942 115292049 - MGP_C57BL6NJ_P0095373 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095374.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115274030 115293830 - MGP_C57BL6NJ_P0095374 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095375.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115286019 115294162 - MGP_C57BL6NJ_P0095375 Dhx30 protein_coding protein_coding MGP_C57BL6NJ_T0095376.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115289820 115294174 - Dhx30 protein_coding processed_transcript MGP_C57BL6NJ_T0095377.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115290918 115294117 - Dhx30 protein_coding retained_intron MGP_C57BL6NJ_T0095378.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115291856 115294375 - Dhx30 protein_coding processed_transcript MGP_C57BL6NJ_T0095379.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115292164 115293851 - Dhx30 protein_coding processed_transcript MGP_C57BL6NJ_T0095380.1 MGP_C57BL6NJ_G0035839.1 mouse_genomes_project 9 115292233 115294128 - Dhx30 protein_coding processed_transcript MGP_C57BL6NJ_T0002520.1 MGP_C57BL6NJ_G0002408.1 mouse_genomes_project 9 74802505 74802717 + TEC TEC MGP_C57BL6NJ_T0092324.1 MGP_C57BL6NJ_G0035071.1 mouse_genomes_project 9 37090152 37091217 + MGP_C57BL6NJ_P0092324 Olfr878 protein_coding protein_coding MGP_C57BL6NJ_T0095811.1 MGP_C57BL6NJ_G0035950.1 mouse_genomes_project 9 128158135 128168953 - MGP_C57BL6NJ_P0095811 Hhatl protein_coding protein_coding MGP_C57BL6NJ_T0095812.1 MGP_C57BL6NJ_G0035950.1 mouse_genomes_project 9 128158141 128167476 - MGP_C57BL6NJ_P0095812 Hhatl protein_coding protein_coding MGP_C57BL6NJ_T0016526.1 MGP_C57BL6NJ_G0014571.1 mouse_genomes_project 9 74221905 74223889 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092402.1 MGP_C57BL6NJ_G0035136.1 mouse_genomes_project 9 39073538 39074568 - MGP_C57BL6NJ_P0092402 Olfr149 protein_coding protein_coding MGP_C57BL6NJ_T0092601.1 MGP_C57BL6NJ_G0035210.1 mouse_genomes_project 9 44547087 44571799 - MGP_C57BL6NJ_P0092601 Arcn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092602.1 MGP_C57BL6NJ_G0035210.1 mouse_genomes_project 9 44559245 44571925 - Arcn1 protein_coding retained_intron MGP_C57BL6NJ_T0092603.1 MGP_C57BL6NJ_G0035210.1 mouse_genomes_project 9 44560153 44564219 - Arcn1 protein_coding processed_transcript MGP_C57BL6NJ_T0002572.1 MGP_C57BL6NJ_G0002459.1 mouse_genomes_project 9 105265007 105268032 + TEC TEC MGP_C57BL6NJ_T0005620.1 MGP_C57BL6NJ_G0004749.1 mouse_genomes_project 9 58877292 58893866 + Gm16130 antisense antisense MGP_C57BL6NJ_T0093821.1 MGP_C57BL6NJ_G0035546.1 mouse_genomes_project 9 80482504 80555107 + MGP_C57BL6NJ_P0093821 Elovl5 protein_coding protein_coding MGP_C57BL6NJ_T0093822.1 MGP_C57BL6NJ_G0035546.1 mouse_genomes_project 9 80482574 80528255 + Elovl5 protein_coding retained_intron MGP_C57BL6NJ_T0093823.1 MGP_C57BL6NJ_G0035546.1 mouse_genomes_project 9 80488757 80550419 + MGP_C57BL6NJ_P0093823 Elovl5 protein_coding protein_coding MGP_C57BL6NJ_T0093824.1 MGP_C57BL6NJ_G0035546.1 mouse_genomes_project 9 80508125 80531544 + MGP_C57BL6NJ_P0093824 Elovl5 protein_coding protein_coding MGP_C57BL6NJ_T0091885.1 MGP_C57BL6NJ_G0034914.1 mouse_genomes_project 9 18516451 18531440 + MGP_C57BL6NJ_P0091885 Pin1 protein_coding protein_coding MGP_C57BL6NJ_T0002533.1 MGP_C57BL6NJ_G0002421.1 mouse_genomes_project 9 79853116 79853667 + TEC TEC MGP_C57BL6NJ_T0011349.1 MGP_C57BL6NJ_G0009434.1 mouse_genomes_project 9 106766253 106766305 - Mir7243 miRNA miRNA MGP_C57BL6NJ_T0100731.1 MGP_C57BL6NJ_G0038777.1 mouse_genomes_project 9 85354455 85354516 - Gm22836 snRNA snRNA MGP_C57BL6NJ_T0095920.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130695429 130700965 + MGP_C57BL6NJ_P0095920 Ccr5 protein_coding protein_coding MGP_C57BL6NJ_T0095921.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130695459 130699050 + Ccr5 protein_coding processed_transcript MGP_C57BL6NJ_T0095922.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130695459 130705686 + MGP_C57BL6NJ_P0095922 Ccr5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095923.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130695467 130698514 + MGP_C57BL6NJ_P0095923 Ccr5 protein_coding protein_coding MGP_C57BL6NJ_T0095924.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130700466 130704035 + Ccr5 protein_coding processed_transcript MGP_C57BL6NJ_T0095925.1 MGP_C57BL6NJ_G0035990.1 mouse_genomes_project 9 130702532 130722533 + Ccr5 protein_coding processed_transcript MGP_C57BL6NJ_T0093922.1 MGP_C57BL6NJ_G0035575.1 mouse_genomes_project 9 85786510 85804424 + MGP_C57BL6NJ_P0093922 Irak1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0093923.1 MGP_C57BL6NJ_G0035575.1 mouse_genomes_project 9 85786776 85803757 + MGP_C57BL6NJ_P0093923 Irak1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0002569.1 MGP_C57BL6NJ_G0002456.1 mouse_genomes_project 9 104501094 104502240 - TEC TEC MGP_C57BL6NJ_T0092892.1 MGP_C57BL6NJ_G0035302.1 mouse_genomes_project 9 53908358 53936957 + MGP_C57BL6NJ_P0092892 4930550C14Rik protein_coding protein_coding MGP_C57BL6NJ_T0092552.1 MGP_C57BL6NJ_G0035192.1 mouse_genomes_project 9 44040873 44054364 - MGP_C57BL6NJ_P0092552 Hinfp protein_coding protein_coding MGP_C57BL6NJ_T0009398.1 MGP_C57BL6NJ_G0007549.1 mouse_genomes_project 9 18282732 18434072 + lincRNA lincRNA MGP_C57BL6NJ_T0002528.1 MGP_C57BL6NJ_G0002416.1 mouse_genomes_project 9 76063449 76070427 - TEC TEC MGP_C57BL6NJ_T0094403.1 MGP_C57BL6NJ_G0035677.1 mouse_genomes_project 9 106366808 106817669 - MGP_C57BL6NJ_P0094403 Ephb1 protein_coding protein_coding MGP_C57BL6NJ_T0094404.1 MGP_C57BL6NJ_G0035677.1 mouse_genomes_project 9 106367251 106817669 - MGP_C57BL6NJ_P0094404 Ephb1 protein_coding protein_coding MGP_C57BL6NJ_T0094406.1 MGP_C57BL6NJ_G0035677.1 mouse_genomes_project 9 106489044 106817669 - MGP_C57BL6NJ_P0094406 Ephb1 protein_coding protein_coding MGP_C57BL6NJ_T0092932.1 MGP_C57BL6NJ_G0035316.1 mouse_genomes_project 9 55084427 55090463 + MGP_C57BL6NJ_P0092932 Sh2d7 protein_coding protein_coding MGP_C57BL6NJ_T0092933.1 MGP_C57BL6NJ_G0035316.1 mouse_genomes_project 9 55084431 55089097 + MGP_C57BL6NJ_P0092933 Sh2d7 protein_coding protein_coding MGP_C57BL6NJ_T0093167.1 MGP_C57BL6NJ_G0035390.1 mouse_genomes_project 9 60277083 60314491 - MGP_C57BL6NJ_P0093167 Bbs4 protein_coding protein_coding MGP_C57BL6NJ_T0100700.1 MGP_C57BL6NJ_G0038746.1 mouse_genomes_project 9 40875539 40875645 - Gm25401 snRNA snRNA MGP_C57BL6NJ_T0101984.1 MGP_C57BL6NJ_G0040030.1 mouse_genomes_project 9 12698772 12698846 + Gm24357 snoRNA snoRNA MGP_C57BL6NJ_T0091940.1 MGP_C57BL6NJ_G0034940.1 mouse_genomes_project 9 19271907 19312298 + MGP_C57BL6NJ_P0091940 Slc44a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091941.1 MGP_C57BL6NJ_G0034940.1 mouse_genomes_project 9 19295092 19312291 + MGP_C57BL6NJ_P0091941 Slc44a2 protein_coding protein_coding MGP_C57BL6NJ_T0091849.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18327095 18336799 - MGP_C57BL6NJ_P0091849 Zfp426 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091850.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18327254 18351264 - MGP_C57BL6NJ_P0091850 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091851.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18327466 18336686 - MGP_C57BL6NJ_P0091851 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091852.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18328372 18351264 - MGP_C57BL6NJ_P0091852 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091853.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18329531 18332009 - Zfp426 protein_coding retained_intron MGP_C57BL6NJ_T0091854.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18329677 18351253 - MGP_C57BL6NJ_P0091854 Zfp426 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091855.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18329722 18349329 - MGP_C57BL6NJ_P0091855 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091856.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18331651 18336783 - MGP_C57BL6NJ_P0091856 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091857.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18333482 18351223 - MGP_C57BL6NJ_P0091857 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0091858.1 MGP_C57BL6NJ_G0034909.1 mouse_genomes_project 9 18334958 18351233 - MGP_C57BL6NJ_P0091858 Zfp426 protein_coding protein_coding MGP_C57BL6NJ_T0100720.1 MGP_C57BL6NJ_G0038766.1 mouse_genomes_project 9 68823219 68823367 + Gm22145 snRNA snRNA MGP_C57BL6NJ_T0011341.1 MGP_C57BL6NJ_G0009426.1 mouse_genomes_project 9 72797668 72797750 - Gm25149 miRNA miRNA MGP_C57BL6NJ_T0092021.1 MGP_C57BL6NJ_G0034970.1 mouse_genomes_project 9 20226624 20228137 + MGP_C57BL6NJ_P0092021 Pigyl protein_coding protein_coding MGP_C57BL6NJ_T0092022.1 MGP_C57BL6NJ_G0034970.1 mouse_genomes_project 9 20226724 20228104 + MGP_C57BL6NJ_P0092022 Pigyl protein_coding protein_coding MGP_C57BL6NJ_T0005713.1 MGP_C57BL6NJ_G0004817.1 mouse_genomes_project 9 120894853 120900508 - Gm4665 antisense antisense MGP_C57BL6NJ_T0092789.1 MGP_C57BL6NJ_G0035274.1 mouse_genomes_project 9 50872289 50879801 - MGP_C57BL6NJ_P0092789 Sdhd protein_coding protein_coding MGP_C57BL6NJ_T0094782.1 MGP_C57BL6NJ_G0035749.1 mouse_genomes_project 9 112414294 112418316 + MGP_C57BL6NJ_P0094782 Zmynd10 protein_coding protein_coding MGP_C57BL6NJ_T0094783.1 MGP_C57BL6NJ_G0035749.1 mouse_genomes_project 9 112414300 112414866 + Zmynd10 protein_coding processed_transcript MGP_C57BL6NJ_T0094784.1 MGP_C57BL6NJ_G0035749.1 mouse_genomes_project 9 112414450 112418316 + MGP_C57BL6NJ_P0094784 Zmynd10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094785.1 MGP_C57BL6NJ_G0035749.1 mouse_genomes_project 9 112416159 112417208 + Zmynd10 protein_coding retained_intron MGP_C57BL6NJ_T0094786.1 MGP_C57BL6NJ_G0035749.1 mouse_genomes_project 9 112417485 112418216 + Zmynd10 protein_coding retained_intron MGP_C57BL6NJ_T0002583.1 MGP_C57BL6NJ_G0002470.1 mouse_genomes_project 9 106737932 106739183 + TEC TEC MGP_C57BL6NJ_T0016617.1 MGP_C57BL6NJ_G0014662.1 mouse_genomes_project 9 107031374 107031575 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094497.1 MGP_C57BL6NJ_G0035697.1 mouse_genomes_project 9 108618213 108635968 - MGP_C57BL6NJ_P0094497 Uba5 protein_coding protein_coding MGP_C57BL6NJ_T0094498.1 MGP_C57BL6NJ_G0035697.1 mouse_genomes_project 9 108619264 108629987 - MGP_C57BL6NJ_P0094498 Uba5 protein_coding protein_coding MGP_C57BL6NJ_T0094499.1 MGP_C57BL6NJ_G0035697.1 mouse_genomes_project 9 108621198 108635897 - MGP_C57BL6NJ_P0094499 Uba5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094500.1 MGP_C57BL6NJ_G0035697.1 mouse_genomes_project 9 108630569 108633296 - Uba5 protein_coding retained_intron MGP_C57BL6NJ_T0005675.1 MGP_C57BL6NJ_G0004786.1 mouse_genomes_project 9 103548923 103554592 - 4930422M22Rik antisense antisense MGP_C57BL6NJ_T0092432.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39735104 39789624 - MGP_C57BL6NJ_P0092432 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092433.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39735110 39980322 - MGP_C57BL6NJ_P0092433 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092434.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39735113 39789252 - MGP_C57BL6NJ_P0092434 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092435.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39735116 39908666 - MGP_C57BL6NJ_P0092435 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092436.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39739747 39836685 - MGP_C57BL6NJ_P0092436 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092437.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39739778 39908760 - MGP_C57BL6NJ_P0092437 Gramd1b protein_coding protein_coding MGP_C57BL6NJ_T0092438.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39741901 39748867 - Gramd1b protein_coding retained_intron MGP_C57BL6NJ_T0092439.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39760079 39776860 - Gramd1b protein_coding retained_intron MGP_C57BL6NJ_T0092440.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39760843 39836983 - Gramd1b protein_coding processed_transcript MGP_C57BL6NJ_T0092441.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39760845 39836969 - Gramd1b protein_coding processed_transcript MGP_C57BL6NJ_T0092442.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39776817 39918293 - Gramd1b protein_coding processed_transcript MGP_C57BL6NJ_T0092443.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39776830 39918283 - Gramd1b protein_coding processed_transcript MGP_C57BL6NJ_T0092444.1 MGP_C57BL6NJ_G0035161.1 mouse_genomes_project 9 39776877 39821061 - Gramd1b protein_coding processed_transcript MGP_C57BL6NJ_T0094409.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107058616 107060625 - Cep63 protein_coding TEC MGP_C57BL6NJ_T0094410.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107060596 107109832 - MGP_C57BL6NJ_P0094410 Cep63 protein_coding protein_coding MGP_C57BL6NJ_T0094411.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107060600 107109040 - MGP_C57BL6NJ_P0094411 Cep63 protein_coding protein_coding MGP_C57BL6NJ_T0094412.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107060705 107061189 - Cep63 protein_coding retained_intron MGP_C57BL6NJ_T0094413.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107065960 107104519 - Cep63 protein_coding retained_intron MGP_C57BL6NJ_T0094414.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107073778 107078312 - Cep63 protein_coding retained_intron MGP_C57BL6NJ_T0094415.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107097868 107109731 - MGP_C57BL6NJ_P0094415 Cep63 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094416.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107101371 107110217 - MGP_C57BL6NJ_P0094416 Cep63 protein_coding protein_coding MGP_C57BL6NJ_T0094417.1 MGP_C57BL6NJ_G0035680.1 mouse_genomes_project 9 107101421 107110217 - MGP_C57BL6NJ_P0094417 Cep63 protein_coding protein_coding MGP_C57BL6NJ_T0092771.1 MGP_C57BL6NJ_G0035264.1 mouse_genomes_project 9 49532872 49601766 + MGP_C57BL6NJ_P0092771 Drd2 protein_coding protein_coding MGP_C57BL6NJ_T0012001.1 MGP_C57BL6NJ_G0010086.1 mouse_genomes_project 9 44123919 44124196 + Gm22141 misc_RNA misc_RNA MGP_C57BL6NJ_T0092062.1 MGP_C57BL6NJ_G0034988.1 mouse_genomes_project 9 23792353 23918305 + MGP_C57BL6NJ_P0092062 Eepd1 protein_coding protein_coding MGP_C57BL6NJ_T0092063.1 MGP_C57BL6NJ_G0034988.1 mouse_genomes_project 9 23793669 23798116 + Eepd1 protein_coding processed_transcript MGP_C57BL6NJ_T0011353.1 MGP_C57BL6NJ_G0009438.1 mouse_genomes_project 9 110922690 110922778 + Mirlet7g miRNA miRNA MGP_C57BL6NJ_T0011362.1 MGP_C57BL6NJ_G0009447.1 mouse_genomes_project 9 115034694 115034762 + Mir7089 miRNA miRNA MGP_C57BL6NJ_T0093229.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62479480 62525621 + MGP_C57BL6NJ_P0093229 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093230.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62479497 62525029 + MGP_C57BL6NJ_P0093230 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093231.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62479972 62525611 + MGP_C57BL6NJ_P0093231 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093232.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480495 62516489 + MGP_C57BL6NJ_P0093232 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093233.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480499 62524961 + MGP_C57BL6NJ_P0093233 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093234.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480530 62514563 + MGP_C57BL6NJ_P0093234 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093235.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480531 62525614 + MGP_C57BL6NJ_P0093235 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093236.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480552 62523840 + MGP_C57BL6NJ_P0093236 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093237.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480552 62523840 + MGP_C57BL6NJ_P0093237 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093238.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480596 62509016 + MGP_C57BL6NJ_P0093238 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093239.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480628 62524100 + MGP_C57BL6NJ_P0093239 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093240.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62480786 62524100 + MGP_C57BL6NJ_P0093240 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093241.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62481443 62501761 + MGP_C57BL6NJ_P0093241 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093242.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62482635 62524100 + MGP_C57BL6NJ_P0093242 Tle3 protein_coding protein_coding MGP_C57BL6NJ_T0093243.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62508982 62517258 + Tle3 protein_coding processed_transcript MGP_C57BL6NJ_T0093244.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62509584 62524959 + Tle3 protein_coding retained_intron MGP_C57BL6NJ_T0093245.1 MGP_C57BL6NJ_G0035406.1 mouse_genomes_project 9 62517060 62525543 + Tle3 protein_coding processed_transcript MGP_C57BL6NJ_T0016606.1 MGP_C57BL6NJ_G0014651.1 mouse_genomes_project 9 103128067 103128506 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092265.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35875732 35912255 + MGP_C57BL6NJ_P0092265 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0092266.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35886353 35940518 + MGP_C57BL6NJ_P0092266 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0092267.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35891731 35925197 + MGP_C57BL6NJ_P0092267 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0092268.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35905460 35940234 + MGP_C57BL6NJ_P0092268 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0092269.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35905579 35929371 + MGP_C57BL6NJ_P0092269 Fez1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092270.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35930468 35932356 + MGP_C57BL6NJ_P0092270 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0092271.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35931693 35940394 + Fez1 protein_coding retained_intron MGP_C57BL6NJ_T0092272.1 MGP_C57BL6NJ_G0035049.1 mouse_genomes_project 9 35932093 35940514 + MGP_C57BL6NJ_P0092272 Fez1 protein_coding protein_coding MGP_C57BL6NJ_T0094691.1 MGP_C57BL6NJ_G0035730.1 mouse_genomes_project 9 111298048 111341876 - Iqcf3 protein_coding processed_transcript MGP_C57BL6NJ_T0094693.1 MGP_C57BL6NJ_G0035730.1 mouse_genomes_project 9 111340572 111363538 - MGP_C57BL6NJ_P0094693 Iqcf3 protein_coding protein_coding MGP_C57BL6NJ_T0094694.1 MGP_C57BL6NJ_G0035730.1 mouse_genomes_project 9 111340981 111363536 - MGP_C57BL6NJ_P0094694 Iqcf3 protein_coding protein_coding MGP_C57BL6NJ_T0094695.1 MGP_C57BL6NJ_G0035730.1 mouse_genomes_project 9 111353991 111363506 - MGP_C57BL6NJ_P0094695 Iqcf3 protein_coding protein_coding MGP_C57BL6NJ_T0094696.1 MGP_C57BL6NJ_G0035730.1 mouse_genomes_project 9 111354537 111363506 - MGP_C57BL6NJ_P0094696 Iqcf3 protein_coding protein_coding MGP_C57BL6NJ_T0093124.1 MGP_C57BL6NJ_G0035377.1 mouse_genomes_project 9 59015278 59018235 - MGP_C57BL6NJ_P0093124 Islr protein_coding protein_coding MGP_C57BL6NJ_T0093125.1 MGP_C57BL6NJ_G0035377.1 mouse_genomes_project 9 59015278 59017568 - MGP_C57BL6NJ_P0093125 Islr protein_coding protein_coding MGP_C57BL6NJ_T0016525.1 MGP_C57BL6NJ_G0014570.1 mouse_genomes_project 9 74171816 74174415 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019054.1 MGP_C57BL6NJ_G0016154.1 mouse_genomes_project 9 113836184 113837345 - Gm35025 processed_transcript lincRNA MGP_C57BL6NJ_T0019055.1 MGP_C57BL6NJ_G0016154.1 mouse_genomes_project 9 113836316 113837066 - Gm35025 processed_transcript lincRNA MGP_C57BL6NJ_T0019056.1 MGP_C57BL6NJ_G0016154.1 mouse_genomes_project 9 113836413 113837108 - Gm35025 processed_transcript TEC MGP_C57BL6NJ_T0009410.1 MGP_C57BL6NJ_G0007561.1 mouse_genomes_project 9 31838350 31894629 + lincRNA lincRNA MGP_C57BL6NJ_T0094301.1 MGP_C57BL6NJ_G0035652.1 mouse_genomes_project 9 103031086 103033665 + MGP_C57BL6NJ_P0094301 Prr23a1 protein_coding protein_coding MGP_C57BL6NJ_T0092920.1 MGP_C57BL6NJ_G0035312.1 mouse_genomes_project 9 54568039 54608724 - MGP_C57BL6NJ_P0092920 Tnfaip8l3 protein_coding protein_coding MGP_C57BL6NJ_T0016532.1 MGP_C57BL6NJ_G0014577.1 mouse_genomes_project 9 75194800 75195107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009400.1 MGP_C57BL6NJ_G0007551.1 mouse_genomes_project 9 18945615 18949108 - Gm26592 lincRNA lincRNA MGP_C57BL6NJ_T0100695.1 MGP_C57BL6NJ_G0038741.1 mouse_genomes_project 9 20915620 20915705 - Gm27639 snRNA snRNA MGP_C57BL6NJ_T0009408.1 MGP_C57BL6NJ_G0007559.1 mouse_genomes_project 9 31619416 31642594 + Gm3331 lincRNA lincRNA MGP_C57BL6NJ_T0092463.1 MGP_C57BL6NJ_G0035167.1 mouse_genomes_project 9 40468065 40479936 - MGP_C57BL6NJ_P0092463 Crtam protein_coding protein_coding MGP_C57BL6NJ_T0092464.1 MGP_C57BL6NJ_G0035167.1 mouse_genomes_project 9 40468108 40500331 - MGP_C57BL6NJ_P0092464 Crtam protein_coding protein_coding MGP_C57BL6NJ_T0092465.1 MGP_C57BL6NJ_G0035167.1 mouse_genomes_project 9 40468110 40500331 - MGP_C57BL6NJ_P0092465 Crtam protein_coding protein_coding MGP_C57BL6NJ_T0092466.1 MGP_C57BL6NJ_G0035167.1 mouse_genomes_project 9 40468111 40500373 - MGP_C57BL6NJ_P0092466 Crtam protein_coding protein_coding MGP_C57BL6NJ_T0095466.1 MGP_C57BL6NJ_G0035853.1 mouse_genomes_project 9 115983370 116013604 + MGP_C57BL6NJ_P0095466 Myl3 protein_coding protein_coding MGP_C57BL6NJ_T0095467.1 MGP_C57BL6NJ_G0035853.1 mouse_genomes_project 9 116008398 116013900 + MGP_C57BL6NJ_P0095467 Myl3 protein_coding protein_coding MGP_C57BL6NJ_T0095468.1 MGP_C57BL6NJ_G0035853.1 mouse_genomes_project 9 116012891 116014251 + Myl3 protein_coding retained_intron MGP_C57BL6NJ_T0091831.1 MGP_C57BL6NJ_G0034897.1 mouse_genomes_project 9 17750890 17756172 + MGP_C57BL6NJ_P0091831 Olfr77 protein_coding protein_coding MGP_C57BL6NJ_T0016529.1 MGP_C57BL6NJ_G0014574.1 mouse_genomes_project 9 74617061 74617269 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094829.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112465338 112473184 - MGP_C57BL6NJ_P0094829 Sema3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094830.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112465881 112476892 - MGP_C57BL6NJ_P0094830 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094831.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112466017 112476862 - MGP_C57BL6NJ_P0094831 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094832.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112466018 112474319 - MGP_C57BL6NJ_P0094832 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094833.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112466019 112473065 - MGP_C57BL6NJ_P0094833 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094834.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112466019 112476856 - MGP_C57BL6NJ_P0094834 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094835.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112467467 112468971 - Sema3b protein_coding retained_intron MGP_C57BL6NJ_T0094836.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112469279 112469831 - Sema3b protein_coding retained_intron MGP_C57BL6NJ_T0094837.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112470813 112472932 - MGP_C57BL6NJ_P0094837 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094838.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112470968 112474579 - MGP_C57BL6NJ_P0094838 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094839.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112471000 112474346 - MGP_C57BL6NJ_P0094839 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094840.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112471830 112474344 - MGP_C57BL6NJ_P0094840 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094841.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112472709 112476883 - MGP_C57BL6NJ_P0094841 Sema3b protein_coding protein_coding MGP_C57BL6NJ_T0094842.1 MGP_C57BL6NJ_G0035757.1 mouse_genomes_project 9 112472753 112474848 - Sema3b protein_coding processed_transcript MGP_C57BL6NJ_T0100740.1 MGP_C57BL6NJ_G0038786.1 mouse_genomes_project 9 98103043 98103200 + Gm24200 snRNA snRNA MGP_C57BL6NJ_T0005696.1 MGP_C57BL6NJ_G0004803.1 mouse_genomes_project 9 112425805 112435409 - Gm9917 antisense antisense MGP_C57BL6NJ_T0005697.1 MGP_C57BL6NJ_G0004803.1 mouse_genomes_project 9 112429846 112435412 - Gm9917 antisense antisense MGP_C57BL6NJ_T0005698.1 MGP_C57BL6NJ_G0004803.1 mouse_genomes_project 9 112430749 112433928 - Gm9917 antisense antisense MGP_C57BL6NJ_T0005699.1 MGP_C57BL6NJ_G0004803.1 mouse_genomes_project 9 112431353 112433784 - Gm9917 antisense antisense MGP_C57BL6NJ_T0092350.1 MGP_C57BL6NJ_G0035096.1 mouse_genomes_project 9 37786861 37788949 + MGP_C57BL6NJ_P0092350 protein_coding protein_coding MGP_C57BL6NJ_T0091643.1 MGP_C57BL6NJ_G0034821.1 mouse_genomes_project 9 4726767 4734263 + MGP_C57BL6NJ_P0091643 Mmp7 protein_coding protein_coding MGP_C57BL6NJ_T0002555.1 MGP_C57BL6NJ_G0002442.1 mouse_genomes_project 9 94930865 94931605 - TEC TEC MGP_C57BL6NJ_T0002517.1 MGP_C57BL6NJ_G0002405.1 mouse_genomes_project 9 74660977 74663088 + TEC TEC MGP_C57BL6NJ_T0091946.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392551 19484770 + MGP_C57BL6NJ_P0091946 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091947.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392575 19484154 + MGP_C57BL6NJ_P0091947 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091948.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392588 19484156 + MGP_C57BL6NJ_P0091948 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091949.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392611 19442727 + MGP_C57BL6NJ_P0091949 Dnm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091950.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392614 19484142 + MGP_C57BL6NJ_P0091950 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091951.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392619 19484140 + MGP_C57BL6NJ_P0091951 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091952.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392739 19483418 + MGP_C57BL6NJ_P0091952 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091953.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392739 19467845 + MGP_C57BL6NJ_P0091953 Dnm2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091954.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392886 19469382 + Dnm2 protein_coding processed_transcript MGP_C57BL6NJ_T0091955.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19392887 19484770 + MGP_C57BL6NJ_P0091955 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091956.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19430618 19431082 + Dnm2 protein_coding processed_transcript MGP_C57BL6NJ_T0091957.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19451324 19477353 + MGP_C57BL6NJ_P0091957 Dnm2 protein_coding protein_coding MGP_C57BL6NJ_T0091958.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19455149 19484775 + Dnm2 protein_coding retained_intron MGP_C57BL6NJ_T0091959.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19471984 19481638 + Dnm2 protein_coding retained_intron MGP_C57BL6NJ_T0091960.1 MGP_C57BL6NJ_G0034943.1 mouse_genomes_project 9 19482122 19483415 + Dnm2 protein_coding processed_transcript MGP_C57BL6NJ_T0002488.1 MGP_C57BL6NJ_G0002376.1 mouse_genomes_project 9 19218427 19221123 + TEC TEC MGP_C57BL6NJ_T0094316.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495820 103516175 + MGP_C57BL6NJ_P0094316 Cep70 protein_coding protein_coding MGP_C57BL6NJ_T0094317.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495895 103550321 + MGP_C57BL6NJ_P0094317 Cep70 protein_coding protein_coding MGP_C57BL6NJ_T0094318.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495906 103506920 + Cep70 protein_coding retained_intron MGP_C57BL6NJ_T0094319.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495914 103517341 + MGP_C57BL6NJ_P0094319 Cep70 protein_coding protein_coding MGP_C57BL6NJ_T0094320.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495916 103547902 + MGP_C57BL6NJ_P0094320 Cep70 protein_coding protein_coding MGP_C57BL6NJ_T0094321.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495935 103515044 + MGP_C57BL6NJ_P0094321 Cep70 protein_coding protein_coding MGP_C57BL6NJ_T0094322.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103495979 103528254 + MGP_C57BL6NJ_P0094322 Cep70 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094323.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103498739 103515479 + Cep70 protein_coding retained_intron MGP_C57BL6NJ_T0094324.1 MGP_C57BL6NJ_G0035661.1 mouse_genomes_project 9 103541406 103546268 + Cep70 protein_coding retained_intron MGP_C57BL6NJ_T0102050.1 MGP_C57BL6NJ_G0040096.1 mouse_genomes_project 9 125401789 125401918 - Gm22729 snoRNA snoRNA MGP_C57BL6NJ_T0011328.1 MGP_C57BL6NJ_G0009413.1 mouse_genomes_project 9 52505105 52505222 + Mir6244 miRNA miRNA MGP_C57BL6NJ_T0091715.1 MGP_C57BL6NJ_G0034840.1 mouse_genomes_project 9 11098404 11117225 + MGP_C57BL6NJ_P0091715 Fam76b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091716.1 MGP_C57BL6NJ_G0034840.1 mouse_genomes_project 9 11098404 11117225 + MGP_C57BL6NJ_P0091716 Fam76b protein_coding protein_coding MGP_C57BL6NJ_T0091717.1 MGP_C57BL6NJ_G0034840.1 mouse_genomes_project 9 11098423 11101946 + Fam76b protein_coding retained_intron MGP_C57BL6NJ_T0091718.1 MGP_C57BL6NJ_G0034840.1 mouse_genomes_project 9 11107391 11110755 + Fam76b protein_coding retained_intron MGP_C57BL6NJ_T0009544.1 MGP_C57BL6NJ_G0007664.1 mouse_genomes_project 9 126064899 126067060 - Gm2449 lincRNA lincRNA MGP_C57BL6NJ_T0092029.1 MGP_C57BL6NJ_G0034976.1 mouse_genomes_project 9 20515642 20557608 + MGP_C57BL6NJ_P0092029 9530077C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0091820.1 MGP_C57BL6NJ_G0034886.1 mouse_genomes_project 9 17090259 17091198 - MGP_C57BL6NJ_P0091820 Olfr847 protein_coding protein_coding MGP_C57BL6NJ_T0092335.1 MGP_C57BL6NJ_G0035081.1 mouse_genomes_project 9 37399113 37400055 + MGP_C57BL6NJ_P0092335 Olfr893 protein_coding protein_coding MGP_C57BL6NJ_T0092567.1 MGP_C57BL6NJ_G0035199.1 mouse_genomes_project 9 44156893 44162413 + MGP_C57BL6NJ_P0092567 Slc37a4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092568.1 MGP_C57BL6NJ_G0035199.1 mouse_genomes_project 9 44157618 44162406 + MGP_C57BL6NJ_P0092568 Slc37a4 protein_coding protein_coding MGP_C57BL6NJ_T0101981.1 MGP_C57BL6NJ_G0040027.1 mouse_genomes_project 9 12697324 12697395 + Gm24299 snoRNA snoRNA MGP_C57BL6NJ_T0016577.1 MGP_C57BL6NJ_G0014622.1 mouse_genomes_project 9 93722530 93725268 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011346.1 MGP_C57BL6NJ_G0009431.1 mouse_genomes_project 9 93257207 93257276 - Mir184 miRNA miRNA MGP_C57BL6NJ_T0011329.1 MGP_C57BL6NJ_G0009414.1 mouse_genomes_project 9 53903914 53903996 - Mir130c miRNA miRNA MGP_C57BL6NJ_T0016488.1 MGP_C57BL6NJ_G0014533.1 mouse_genomes_project 9 12073326 12073854 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094057.1 MGP_C57BL6NJ_G0035601.1 mouse_genomes_project 9 91691133 91744549 - MGP_C57BL6NJ_P0094057 Gm20537 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094059.1 MGP_C57BL6NJ_G0035601.1 mouse_genomes_project 9 91704140 91744434 - MGP_C57BL6NJ_P0094059 Gm20537 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009438.1 MGP_C57BL6NJ_G0007583.1 mouse_genomes_project 9 58328868 58335215 - Gm26631 lincRNA lincRNA MGP_C57BL6NJ_T0093283.1 MGP_C57BL6NJ_G0035418.1 mouse_genomes_project 9 64172229 64281834 - MGP_C57BL6NJ_P0093283 Pias1 protein_coding protein_coding MGP_C57BL6NJ_T0002587.1 MGP_C57BL6NJ_G0002474.1 mouse_genomes_project 9 107986147 107986465 + TEC TEC MGP_C57BL6NJ_T0002539.1 MGP_C57BL6NJ_G0002427.1 mouse_genomes_project 9 89729284 89729756 - TEC TEC MGP_C57BL6NJ_T0002540.1 MGP_C57BL6NJ_G0002427.1 mouse_genomes_project 9 89729284 89729398 - TEC TEC MGP_C57BL6NJ_T0093512.1 MGP_C57BL6NJ_G0035480.1 mouse_genomes_project 9 69599945 69601744 - MGP_C57BL6NJ_P0093512 C2cd4a protein_coding protein_coding MGP_C57BL6NJ_T0016485.1 MGP_C57BL6NJ_G0014530.1 mouse_genomes_project 9 4755062 4757738 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099539.1 MGP_C57BL6NJ_G0037590.1 mouse_genomes_project 9 120915796 120921254 + Gm27002 sense_intronic sense_intronic MGP_C57BL6NJ_T0016640.1 MGP_C57BL6NJ_G0014685.1 mouse_genomes_project 9 129839335 129839702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102003.1 MGP_C57BL6NJ_G0040049.1 mouse_genomes_project 9 40287260 40287350 + Snord14e snoRNA snoRNA MGP_C57BL6NJ_T0092914.1 MGP_C57BL6NJ_G0035307.1 mouse_genomes_project 9 54202981 54228089 - MGP_C57BL6NJ_P0092914 Rab39 protein_coding protein_coding MGP_C57BL6NJ_T0093574.1 MGP_C57BL6NJ_G0035496.1 mouse_genomes_project 9 72650199 72764132 + MGP_C57BL6NJ_P0093574 Adam10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093575.1 MGP_C57BL6NJ_G0035496.1 mouse_genomes_project 9 72650199 72765979 + MGP_C57BL6NJ_P0093575 Adam10 protein_coding protein_coding MGP_C57BL6NJ_T0093576.1 MGP_C57BL6NJ_G0035496.1 mouse_genomes_project 9 72650218 72732442 + MGP_C57BL6NJ_P0093576 Adam10 protein_coding protein_coding MGP_C57BL6NJ_T0093577.1 MGP_C57BL6NJ_G0035496.1 mouse_genomes_project 9 72761802 72764128 + Adam10 protein_coding retained_intron MGP_C57BL6NJ_T0093940.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078295 86118720 - MGP_C57BL6NJ_P0093940 Hmgn3 protein_coding protein_coding MGP_C57BL6NJ_T0093941.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078300 86079178 - Hmgn3 protein_coding processed_transcript MGP_C57BL6NJ_T0093942.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078300 86118745 - MGP_C57BL6NJ_P0093942 Hmgn3 protein_coding protein_coding MGP_C57BL6NJ_T0093943.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078300 86118805 - MGP_C57BL6NJ_P0093943 Hmgn3 protein_coding protein_coding MGP_C57BL6NJ_T0093944.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078320 86079484 - Hmgn3 protein_coding retained_intron MGP_C57BL6NJ_T0093945.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078533 86080921 - Hmgn3 protein_coding retained_intron MGP_C57BL6NJ_T0093946.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86078730 86118792 - MGP_C57BL6NJ_P0093946 Hmgn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093947.1 MGP_C57BL6NJ_G0035577.1 mouse_genomes_project 9 86079072 86079446 - Hmgn3 protein_coding retained_intron MGP_C57BL6NJ_T0095617.1 MGP_C57BL6NJ_G0035893.1 mouse_genomes_project 9 120426856 120461623 - MGP_C57BL6NJ_P0095617 Cmtm7 protein_coding protein_coding MGP_C57BL6NJ_T0095618.1 MGP_C57BL6NJ_G0035893.1 mouse_genomes_project 9 120426856 120461623 - MGP_C57BL6NJ_P0095618 Cmtm7 protein_coding protein_coding MGP_C57BL6NJ_T0094619.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110979907 110999793 - MGP_C57BL6NJ_P0094619 Alas1 protein_coding protein_coding MGP_C57BL6NJ_T0094620.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110979910 111000189 - MGP_C57BL6NJ_P0094620 Alas1 protein_coding protein_coding MGP_C57BL6NJ_T0094621.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110980379 110999919 - MGP_C57BL6NJ_P0094621 Alas1 protein_coding protein_coding MGP_C57BL6NJ_T0094622.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110980394 110990087 - Alas1 protein_coding processed_transcript MGP_C57BL6NJ_T0094623.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110980647 110985183 - MGP_C57BL6NJ_P0094623 Alas1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094624.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110981841 110983537 - Alas1 protein_coding retained_intron MGP_C57BL6NJ_T0094625.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110983130 110986486 - Alas1 protein_coding retained_intron MGP_C57BL6NJ_T0094626.1 MGP_C57BL6NJ_G0035718.1 mouse_genomes_project 9 110985268 110999915 - MGP_C57BL6NJ_P0094626 Alas1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092216.1 MGP_C57BL6NJ_G0035029.1 mouse_genomes_project 9 34499734 34632212 + MGP_C57BL6NJ_P0092216 Pate2 protein_coding protein_coding MGP_C57BL6NJ_T0092217.1 MGP_C57BL6NJ_G0035029.1 mouse_genomes_project 9 34503323 34575682 + Pate2 protein_coding processed_transcript MGP_C57BL6NJ_T0092220.1 MGP_C57BL6NJ_G0035029.1 mouse_genomes_project 9 34597858 34601109 + MGP_C57BL6NJ_P0092220 Pate2 protein_coding protein_coding MGP_C57BL6NJ_T0092221.1 MGP_C57BL6NJ_G0035029.1 mouse_genomes_project 9 34597870 34599635 + Pate2 protein_coding retained_intron MGP_C57BL6NJ_T0002567.1 MGP_C57BL6NJ_G0002454.1 mouse_genomes_project 9 103557499 103560368 + TEC TEC MGP_C57BL6NJ_T0100696.1 MGP_C57BL6NJ_G0038742.1 mouse_genomes_project 9 28879319 28879426 - Gm26435 snRNA snRNA MGP_C57BL6NJ_T0092403.1 MGP_C57BL6NJ_G0035137.1 mouse_genomes_project 9 39093591 39094530 + MGP_C57BL6NJ_P0092403 Olfr965 protein_coding protein_coding MGP_C57BL6NJ_T0094635.1 MGP_C57BL6NJ_G0035721.1 mouse_genomes_project 9 111220005 111221823 + MGP_C57BL6NJ_P0094635 protein_coding protein_coding MGP_C57BL6NJ_T0102013.1 MGP_C57BL6NJ_G0040059.1 mouse_genomes_project 9 65554277 65554347 + Gm22571 snoRNA snoRNA MGP_C57BL6NJ_T0005584.1 MGP_C57BL6NJ_G0004725.1 mouse_genomes_project 9 22576796 22657296 + Gm10701 antisense antisense MGP_C57BL6NJ_T0005587.1 MGP_C57BL6NJ_G0004728.1 mouse_genomes_project 9 31506328 31507848 - Gm27240 antisense antisense MGP_C57BL6NJ_T0095399.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115529256 115570092 + MGP_C57BL6NJ_P0095399 Scap protein_coding protein_coding MGP_C57BL6NJ_T0095400.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115529264 115550410 + Scap protein_coding retained_intron MGP_C57BL6NJ_T0095401.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115529324 115583108 + MGP_C57BL6NJ_P0095401 Scap protein_coding protein_coding MGP_C57BL6NJ_T0095402.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115529518 115550258 + MGP_C57BL6NJ_P0095402 Scap protein_coding protein_coding MGP_C57BL6NJ_T0095403.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115529604 115569324 + MGP_C57BL6NJ_P0095403 Scap protein_coding protein_coding MGP_C57BL6NJ_T0095404.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115541290 115550258 + MGP_C57BL6NJ_P0095404 Scap protein_coding protein_coding MGP_C57BL6NJ_T0095405.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115558281 115560782 + Scap protein_coding retained_intron MGP_C57BL6NJ_T0095406.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115558714 115569293 + Scap protein_coding processed_transcript MGP_C57BL6NJ_T0095407.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115571320 115573706 + Scap protein_coding retained_intron MGP_C57BL6NJ_T0095408.1 MGP_C57BL6NJ_G0035843.1 mouse_genomes_project 9 115575303 115575787 + Scap protein_coding retained_intron MGP_C57BL6NJ_T0100735.1 MGP_C57BL6NJ_G0038781.1 mouse_genomes_project 9 89907269 89907383 - Gm25949 snRNA snRNA MGP_C57BL6NJ_T0092414.1 MGP_C57BL6NJ_G0035148.1 mouse_genomes_project 9 39378683 39381496 - MGP_C57BL6NJ_P0092414 Olfr976 protein_coding protein_coding MGP_C57BL6NJ_T0091962.1 MGP_C57BL6NJ_G0034945.1 mouse_genomes_project 9 19500920 19527865 + MGP_C57BL6NJ_P0091962 AB124611 protein_coding protein_coding MGP_C57BL6NJ_T0091963.1 MGP_C57BL6NJ_G0034945.1 mouse_genomes_project 9 19500945 19527858 + MGP_C57BL6NJ_P0091963 AB124611 protein_coding protein_coding MGP_C57BL6NJ_T0091964.1 MGP_C57BL6NJ_G0034945.1 mouse_genomes_project 9 19500972 19527863 + MGP_C57BL6NJ_P0091964 AB124611 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095723.1 MGP_C57BL6NJ_G0035924.1 mouse_genomes_project 9 126067091 126099499 + MGP_C57BL6NJ_P0095723 Wdr48 protein_coding protein_coding MGP_C57BL6NJ_T0093478.1 MGP_C57BL6NJ_G0035473.1 mouse_genomes_project 9 68509038 68533313 - MGP_C57BL6NJ_P0093478 Aph1c protein_coding protein_coding MGP_C57BL6NJ_T0095272.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114043104 114057428 - MGP_C57BL6NJ_P0095272 Atrip protein_coding protein_coding MGP_C57BL6NJ_T0095273.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114043142 114057356 - MGP_C57BL6NJ_P0095273 Atrip protein_coding protein_coding MGP_C57BL6NJ_T0095274.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114043167 114045593 - Atrip protein_coding retained_intron MGP_C57BL6NJ_T0095275.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114044018 114048697 - MGP_C57BL6NJ_P0095275 Atrip protein_coding protein_coding MGP_C57BL6NJ_T0095276.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114050768 114052823 - Atrip protein_coding retained_intron MGP_C57BL6NJ_T0095277.1 MGP_C57BL6NJ_G0035817.1 mouse_genomes_project 9 114055049 114057370 - Atrip protein_coding retained_intron MGP_C57BL6NJ_T0016531.1 MGP_C57BL6NJ_G0014576.1 mouse_genomes_project 9 74941431 74941738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005641.1 MGP_C57BL6NJ_G0004765.1 mouse_genomes_project 9 81021150 81022353 - 4930542C12Rik antisense antisense MGP_C57BL6NJ_T0092386.1 MGP_C57BL6NJ_G0035126.1 mouse_genomes_project 9 38806553 38807790 - MGP_C57BL6NJ_P0092386 Olfr955 protein_coding protein_coding MGP_C57BL6NJ_T0009422.1 MGP_C57BL6NJ_G0007570.1 mouse_genomes_project 9 39980093 39982559 + Gm17540 lincRNA lincRNA MGP_C57BL6NJ_T0016510.1 MGP_C57BL6NJ_G0014555.1 mouse_genomes_project 9 49218946 49219639 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093064.1 MGP_C57BL6NJ_G0035358.1 mouse_genomes_project 9 58297009 58298355 + MGP_C57BL6NJ_P0093064 Rpp25 protein_coding protein_coding MGP_C57BL6NJ_T0009459.1 MGP_C57BL6NJ_G0007599.1 mouse_genomes_project 9 74583226 74597213 - 4930509E16Rik lincRNA lincRNA MGP_C57BL6NJ_T0094718.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111664053 111722799 - MGP_C57BL6NJ_P0094718 Manf protein_coding protein_coding MGP_C57BL6NJ_T0094720.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111698731 111721210 - MGP_C57BL6NJ_P0094720 Manf protein_coding protein_coding MGP_C57BL6NJ_T0094724.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111718341 111722906 - MGP_C57BL6NJ_P0094724 Manf protein_coding protein_coding MGP_C57BL6NJ_T0094725.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111719679 111722342 - MGP_C57BL6NJ_P0094725 Manf protein_coding protein_coding MGP_C57BL6NJ_T0094726.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111720010 111722797 - MGP_C57BL6NJ_P0094726 Manf protein_coding protein_coding MGP_C57BL6NJ_T0094727.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111720957 111722842 - Manf protein_coding retained_intron MGP_C57BL6NJ_T0094728.1 MGP_C57BL6NJ_G0035738.1 mouse_genomes_project 9 111721488 111722844 - Manf protein_coding retained_intron MGP_C57BL6NJ_T0092759.1 MGP_C57BL6NJ_G0035258.1 mouse_genomes_project 9 49051873 49064599 - MGP_C57BL6NJ_P0092759 Htr3a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092760.1 MGP_C57BL6NJ_G0035258.1 mouse_genomes_project 9 49051880 49064733 - MGP_C57BL6NJ_P0092760 Htr3a protein_coding protein_coding MGP_C57BL6NJ_T0012012.1 MGP_C57BL6NJ_G0010097.1 mouse_genomes_project 9 115285917 115286045 - Gm27855 misc_RNA misc_RNA MGP_C57BL6NJ_T0095721.1 MGP_C57BL6NJ_G0035922.1 mouse_genomes_project 9 125735558 125852410 - MGP_C57BL6NJ_P0095721 Scn10a protein_coding protein_coding MGP_C57BL6NJ_T0095221.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113908313 113926306 + MGP_C57BL6NJ_P0095221 Uqcrc1 protein_coding protein_coding MGP_C57BL6NJ_T0095222.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113908394 113921575 + MGP_C57BL6NJ_P0095222 Uqcrc1 protein_coding protein_coding MGP_C57BL6NJ_T0095223.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113908395 113921391 + MGP_C57BL6NJ_P0095223 Uqcrc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095224.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113908572 113921110 + Uqcrc1 protein_coding retained_intron MGP_C57BL6NJ_T0095225.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113915181 113921697 + MGP_C57BL6NJ_P0095225 Uqcrc1 protein_coding protein_coding MGP_C57BL6NJ_T0095226.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113922847 113926302 + Uqcrc1 protein_coding retained_intron MGP_C57BL6NJ_T0095227.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113924099 113926223 + MGP_C57BL6NJ_P0095227 Uqcrc1 protein_coding protein_coding MGP_C57BL6NJ_T0095228.1 MGP_C57BL6NJ_G0035810.1 mouse_genomes_project 9 113924993 113925795 + Uqcrc1 protein_coding retained_intron MGP_C57BL6NJ_T0011325.1 MGP_C57BL6NJ_G0009410.1 mouse_genomes_project 9 51416852 51416929 - Mir34c miRNA miRNA MGP_C57BL6NJ_T0005654.1 MGP_C57BL6NJ_G0004774.1 mouse_genomes_project 9 99396342 99397661 + Gm28424 antisense antisense MGP_C57BL6NJ_T0094045.1 MGP_C57BL6NJ_G0035598.1 mouse_genomes_project 9 90976469 91007477 - MGP_C57BL6NJ_P0094045 Tbx18 protein_coding protein_coding MGP_C57BL6NJ_T0094046.1 MGP_C57BL6NJ_G0035598.1 mouse_genomes_project 9 91000613 91006714 - Tbx18 protein_coding processed_transcript MGP_C57BL6NJ_T0091977.1 MGP_C57BL6NJ_G0034948.1 mouse_genomes_project 9 19582978 19586227 + MGP_C57BL6NJ_P0091977 1810026J23Rik protein_coding protein_coding MGP_C57BL6NJ_T0094091.1 MGP_C57BL6NJ_G0035612.1 mouse_genomes_project 9 93371845 93377785 + MGP_C57BL6NJ_P0094091 Rasgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0094092.1 MGP_C57BL6NJ_G0035612.1 mouse_genomes_project 9 93371846 93377772 + MGP_C57BL6NJ_P0094092 Rasgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0094093.1 MGP_C57BL6NJ_G0035612.1 mouse_genomes_project 9 93371846 93496568 + MGP_C57BL6NJ_P0094093 Rasgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0094094.1 MGP_C57BL6NJ_G0035612.1 mouse_genomes_project 9 93371849 93390060 + Rasgrf1 protein_coding retained_intron MGP_C57BL6NJ_T0091640.1 MGP_C57BL6NJ_G0034819.1 mouse_genomes_project 9 4606409 4617508 + MGP_C57BL6NJ_P0091640 Mmp27 protein_coding protein_coding MGP_C57BL6NJ_T0091641.1 MGP_C57BL6NJ_G0034819.1 mouse_genomes_project 9 4606409 4617491 + MGP_C57BL6NJ_P0091641 Mmp27 protein_coding protein_coding MGP_C57BL6NJ_T0093875.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82312169 82438374 - MGP_C57BL6NJ_P0093875 Col12a1 protein_coding protein_coding MGP_C57BL6NJ_T0093876.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82312169 82326135 - MGP_C57BL6NJ_P0093876 Col12a1 protein_coding protein_coding MGP_C57BL6NJ_T0093877.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82314937 82438576 - MGP_C57BL6NJ_P0093877 Col12a1 protein_coding protein_coding MGP_C57BL6NJ_T0093878.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82410216 82438576 - Col12a1 protein_coding retained_intron MGP_C57BL6NJ_T0093879.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82432396 82438687 - Col12a1 protein_coding retained_intron MGP_C57BL6NJ_T0093880.1 MGP_C57BL6NJ_G0035566.1 mouse_genomes_project 9 82434767 82438350 - Col12a1 protein_coding retained_intron MGP_C57BL6NJ_T0091913.1 MGP_C57BL6NJ_G0034930.1 mouse_genomes_project 9 18995274 19016433 - MGP_C57BL6NJ_P0091913 Raver1 protein_coding protein_coding MGP_C57BL6NJ_T0011331.1 MGP_C57BL6NJ_G0009416.1 mouse_genomes_project 9 59084648 59084753 + Mir6385 miRNA miRNA MGP_C57BL6NJ_T0093573.1 MGP_C57BL6NJ_G0035495.1 mouse_genomes_project 9 72623595 72625205 + MGP_C57BL6NJ_P0093573 Gm10642 protein_coding protein_coding MGP_C57BL6NJ_T0005590.1 MGP_C57BL6NJ_G0004731.1 mouse_genomes_project 9 36091912 36096826 + Gm3896 antisense antisense MGP_C57BL6NJ_T0092578.1 MGP_C57BL6NJ_G0035208.1 mouse_genomes_project 9 44472004 44485056 + MGP_C57BL6NJ_P0092578 Treh protein_coding protein_coding MGP_C57BL6NJ_T0092579.1 MGP_C57BL6NJ_G0035208.1 mouse_genomes_project 9 44472006 44485055 + MGP_C57BL6NJ_P0092579 Treh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092580.1 MGP_C57BL6NJ_G0035208.1 mouse_genomes_project 9 44472020 44485056 + MGP_C57BL6NJ_P0092580 Treh protein_coding protein_coding MGP_C57BL6NJ_T0092581.1 MGP_C57BL6NJ_G0035208.1 mouse_genomes_project 9 44482046 44484767 + MGP_C57BL6NJ_P0092581 Treh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002537.1 MGP_C57BL6NJ_G0002425.1 mouse_genomes_project 9 88432248 88434089 - TEC TEC MGP_C57BL6NJ_T0005706.1 MGP_C57BL6NJ_G0004810.1 mouse_genomes_project 9 114079505 114084478 - Gm7628 antisense antisense MGP_C57BL6NJ_T0092210.1 MGP_C57BL6NJ_G0035026.1 mouse_genomes_project 9 34466088 34487982 - MGP_C57BL6NJ_P0092210 Ddx25 protein_coding protein_coding MGP_C57BL6NJ_T0099528.1 MGP_C57BL6NJ_G0037580.1 mouse_genomes_project 9 26639449 26640807 + Gm15606 sense_intronic sense_intronic MGP_C57BL6NJ_T0099529.1 MGP_C57BL6NJ_G0037580.1 mouse_genomes_project 9 26639502 26641084 + Gm15606 sense_intronic sense_intronic MGP_C57BL6NJ_T0095883.1 MGP_C57BL6NJ_G0035978.1 mouse_genomes_project 9 130082588 130143503 + MGP_C57BL6NJ_P0095883 Sacm1l protein_coding protein_coding MGP_C57BL6NJ_T0002525.1 MGP_C57BL6NJ_G0002413.1 mouse_genomes_project 9 75152341 75154188 + TEC TEC MGP_C57BL6NJ_T0016491.1 MGP_C57BL6NJ_G0014536.1 mouse_genomes_project 9 20803737 20804532 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011314.1 MGP_C57BL6NJ_G0009399.1 mouse_genomes_project 9 38362056 38362140 + Gm25032 miRNA miRNA MGP_C57BL6NJ_T0101999.1 MGP_C57BL6NJ_G0040045.1 mouse_genomes_project 9 37758647 37758771 + Gm23271 snoRNA snoRNA MGP_C57BL6NJ_T0009464.1 MGP_C57BL6NJ_G0007604.1 mouse_genomes_project 9 77116977 77119454 - Gm28182 lincRNA lincRNA MGP_C57BL6NJ_T0095704.1 MGP_C57BL6NJ_G0035916.1 mouse_genomes_project 9 125435130 125439238 - MGP_C57BL6NJ_P0095704 Myd88 protein_coding protein_coding MGP_C57BL6NJ_T0095705.1 MGP_C57BL6NJ_G0035916.1 mouse_genomes_project 9 125435142 125439199 - Myd88 protein_coding retained_intron MGP_C57BL6NJ_T0095707.1 MGP_C57BL6NJ_G0035916.1 mouse_genomes_project 9 125438886 125440608 - MGP_C57BL6NJ_P0095707 Myd88 protein_coding protein_coding MGP_C57BL6NJ_T0005707.1 MGP_C57BL6NJ_G0004811.1 mouse_genomes_project 9 114483907 114497293 + antisense antisense MGP_C57BL6NJ_T0095163.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113586341 113618074 - MGP_C57BL6NJ_P0095163 Arih2 protein_coding protein_coding MGP_C57BL6NJ_T0095164.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113586349 113590017 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0095165.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113588088 113644717 - MGP_C57BL6NJ_P0095165 Arih2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095166.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113588210 113592089 - MGP_C57BL6NJ_P0095166 Arih2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095167.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113588345 113590762 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0095168.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113588676 113591365 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0095169.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113593301 113644718 - MGP_C57BL6NJ_P0095169 Arih2 protein_coding protein_coding MGP_C57BL6NJ_T0095170.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113593385 113617912 - MGP_C57BL6NJ_P0095170 Arih2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095171.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113598173 113618722 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0095172.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113599173 113644650 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0095173.1 MGP_C57BL6NJ_G0035802.1 mouse_genomes_project 9 113640039 113644701 - Arih2 protein_coding retained_intron MGP_C57BL6NJ_T0093298.1 MGP_C57BL6NJ_G0035423.1 mouse_genomes_project 9 64933324 64972073 + MGP_C57BL6NJ_P0093298 Aagab protein_coding protein_coding MGP_C57BL6NJ_T0092415.1 MGP_C57BL6NJ_G0035149.1 mouse_genomes_project 9 39415390 39416505 + MGP_C57BL6NJ_P0092415 Olfr978 protein_coding protein_coding MGP_C57BL6NJ_T0092804.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50911576 50940169 - MGP_C57BL6NJ_P0092804 Dlat protein_coding protein_coding MGP_C57BL6NJ_T0092805.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50913471 50921305 - Dlat protein_coding retained_intron MGP_C57BL6NJ_T0092806.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50914399 50923133 - Dlat protein_coding processed_transcript MGP_C57BL6NJ_T0092807.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50916861 50921006 - Dlat protein_coding retained_intron MGP_C57BL6NJ_T0092808.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50917178 50924572 - Dlat protein_coding processed_transcript MGP_C57BL6NJ_T0092809.1 MGP_C57BL6NJ_G0035278.1 mouse_genomes_project 9 50920976 50926839 - Dlat protein_coding retained_intron MGP_C57BL6NJ_T0092646.1 MGP_C57BL6NJ_G0035223.1 mouse_genomes_project 9 44927038 44958333 - MGP_C57BL6NJ_P0092646 Gm10684 protein_coding protein_coding MGP_C57BL6NJ_T0009470.1 MGP_C57BL6NJ_G0007609.1 mouse_genomes_project 9 81936547 81936986 + Gm28620 lincRNA lincRNA MGP_C57BL6NJ_T0094797.1 MGP_C57BL6NJ_G0035751.1 mouse_genomes_project 9 112430251 112433109 + MGP_C57BL6NJ_P0094797 Tusc2 protein_coding protein_coding MGP_C57BL6NJ_T0094798.1 MGP_C57BL6NJ_G0035751.1 mouse_genomes_project 9 112430347 112430945 + Tusc2 protein_coding processed_transcript MGP_C57BL6NJ_T0094799.1 MGP_C57BL6NJ_G0035751.1 mouse_genomes_project 9 112430366 112431993 + MGP_C57BL6NJ_P0094799 Tusc2 protein_coding protein_coding MGP_C57BL6NJ_T0009396.1 MGP_C57BL6NJ_G0007547.1 mouse_genomes_project 9 10478023 10478426 - Gm29176 lincRNA lincRNA MGP_C57BL6NJ_T0093077.1 MGP_C57BL6NJ_G0035366.1 mouse_genomes_project 9 58433821 58455144 - MGP_C57BL6NJ_P0093077 Csk protein_coding protein_coding MGP_C57BL6NJ_T0092125.1 MGP_C57BL6NJ_G0035008.1 mouse_genomes_project 9 29947183 30000962 + MGP_C57BL6NJ_P0092125 Prdm10 protein_coding protein_coding MGP_C57BL6NJ_T0092126.1 MGP_C57BL6NJ_G0035008.1 mouse_genomes_project 9 29983513 30063344 + MGP_C57BL6NJ_P0092126 Prdm10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092127.1 MGP_C57BL6NJ_G0035008.1 mouse_genomes_project 9 29984677 30000951 + Prdm10 protein_coding retained_intron MGP_C57BL6NJ_T0092128.1 MGP_C57BL6NJ_G0035008.1 mouse_genomes_project 9 29985465 30060151 + MGP_C57BL6NJ_P0092128 Prdm10 protein_coding protein_coding MGP_C57BL6NJ_T0092904.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54126634 54185687 - MGP_C57BL6NJ_P0092904 Cul5 protein_coding protein_coding MGP_C57BL6NJ_T0092905.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54126634 54188194 - MGP_C57BL6NJ_P0092905 Cul5 protein_coding protein_coding MGP_C57BL6NJ_T0092906.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54128652 54134087 - Cul5 protein_coding retained_intron MGP_C57BL6NJ_T0092907.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54129076 54185691 - MGP_C57BL6NJ_P0092907 Cul5 protein_coding protein_coding MGP_C57BL6NJ_T0092908.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54129868 54185466 - MGP_C57BL6NJ_P0092908 Cul5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092909.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54141306 54164467 - Cul5 protein_coding retained_intron MGP_C57BL6NJ_T0092910.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54146000 54185667 - Cul5 protein_coding retained_intron MGP_C57BL6NJ_T0092911.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54156451 54164563 - Cul5 protein_coding retained_intron MGP_C57BL6NJ_T0092912.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54164321 54174871 - Cul5 protein_coding processed_transcript MGP_C57BL6NJ_T0092913.1 MGP_C57BL6NJ_G0035306.1 mouse_genomes_project 9 54171542 54185252 - MGP_C57BL6NJ_P0092913 Cul5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092985.1 MGP_C57BL6NJ_G0035333.1 mouse_genomes_project 9 55931527 56046977 + MGP_C57BL6NJ_P0092985 Tmem266 protein_coding protein_coding MGP_C57BL6NJ_T0092986.1 MGP_C57BL6NJ_G0035333.1 mouse_genomes_project 9 55931563 56046977 + MGP_C57BL6NJ_P0092986 Tmem266 protein_coding protein_coding MGP_C57BL6NJ_T0092987.1 MGP_C57BL6NJ_G0035333.1 mouse_genomes_project 9 55937815 56045990 + Tmem266 protein_coding processed_transcript MGP_C57BL6NJ_T0102052.1 MGP_C57BL6NJ_G0040098.1 mouse_genomes_project 9 126317884 126318087 + Gm26448 snoRNA snoRNA MGP_C57BL6NJ_T0093176.1 MGP_C57BL6NJ_G0035393.1 mouse_genomes_project 9 60520312 60545717 + MGP_C57BL6NJ_P0093176 Hexa protein_coding protein_coding MGP_C57BL6NJ_T0002529.1 MGP_C57BL6NJ_G0002417.1 mouse_genomes_project 9 78010406 78011094 + TEC TEC MGP_C57BL6NJ_T0095769.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127237276 127387539 - Ulk4 protein_coding processed_transcript MGP_C57BL6NJ_T0095770.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127241462 127321961 - Ulk4 protein_coding retained_intron MGP_C57BL6NJ_T0095771.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127241462 127578874 - MGP_C57BL6NJ_P0095771 Ulk4 protein_coding protein_coding MGP_C57BL6NJ_T0095772.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127243412 127578847 - MGP_C57BL6NJ_P0095772 Ulk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095773.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127350627 127578858 - MGP_C57BL6NJ_P0095773 Ulk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095774.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127350631 127578849 - MGP_C57BL6NJ_P0095774 Ulk4 protein_coding protein_coding MGP_C57BL6NJ_T0095775.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127380373 127578874 - Ulk4 protein_coding retained_intron MGP_C57BL6NJ_T0095776.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127441031 127551168 - MGP_C57BL6NJ_P0095776 Ulk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095777.1 MGP_C57BL6NJ_G0035940.1 mouse_genomes_project 9 127444525 127479185 - Ulk4 protein_coding processed_transcript MGP_C57BL6NJ_T0016591.1 MGP_C57BL6NJ_G0014636.1 mouse_genomes_project 9 98246116 98246462 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091788.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15924789 16007340 - MGP_C57BL6NJ_P0091788 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091789.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15925858 15992891 - MGP_C57BL6NJ_P0091789 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091790.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15925859 15999316 - MGP_C57BL6NJ_P0091790 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091791.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15987578 15992777 - Naalad2 protein_coding retained_intron MGP_C57BL6NJ_T0091792.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15991912 16012774 - MGP_C57BL6NJ_P0091792 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091793.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15992683 16012776 - MGP_C57BL6NJ_P0091793 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091794.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15994927 16012797 - MGP_C57BL6NJ_P0091794 Naalad2 protein_coding protein_coding MGP_C57BL6NJ_T0091795.1 MGP_C57BL6NJ_G0034866.1 mouse_genomes_project 9 15995033 16012778 - Naalad2 protein_coding processed_transcript MGP_C57BL6NJ_T0094078.1 MGP_C57BL6NJ_G0035606.1 mouse_genomes_project 9 92291010 92294345 + MGP_C57BL6NJ_P0094078 protein_coding protein_coding MGP_C57BL6NJ_T0094478.1 MGP_C57BL6NJ_G0035692.1 mouse_genomes_project 9 107893389 107904253 - MGP_C57BL6NJ_P0094478 Cdv3 protein_coding protein_coding MGP_C57BL6NJ_T0094479.1 MGP_C57BL6NJ_G0035692.1 mouse_genomes_project 9 107893431 107904745 - MGP_C57BL6NJ_P0094479 Cdv3 protein_coding protein_coding MGP_C57BL6NJ_T0094480.1 MGP_C57BL6NJ_G0035692.1 mouse_genomes_project 9 107900729 107904106 - Cdv3 protein_coding retained_intron MGP_C57BL6NJ_T0092627.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44736999 44780436 - MGP_C57BL6NJ_P0092627 Ube4a protein_coding protein_coding MGP_C57BL6NJ_T0092628.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44739716 44780476 - MGP_C57BL6NJ_P0092628 Ube4a protein_coding protein_coding MGP_C57BL6NJ_T0092629.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44747791 44780395 - MGP_C57BL6NJ_P0092629 Ube4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092630.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44747891 44780401 - MGP_C57BL6NJ_P0092630 Ube4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092631.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44760905 44780433 - Ube4a protein_coding retained_intron MGP_C57BL6NJ_T0092632.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44767835 44780430 - MGP_C57BL6NJ_P0092632 Ube4a protein_coding protein_coding MGP_C57BL6NJ_T0092633.1 MGP_C57BL6NJ_G0035216.1 mouse_genomes_project 9 44771177 44780412 - Ube4a protein_coding retained_intron MGP_C57BL6NJ_T0094632.1 MGP_C57BL6NJ_G0035720.1 mouse_genomes_project 9 111141829 111159525 + MGP_C57BL6NJ_P0094632 Dusp7 protein_coding protein_coding MGP_C57BL6NJ_T0094633.1 MGP_C57BL6NJ_G0035720.1 mouse_genomes_project 9 111142809 111144651 + Dusp7 protein_coding processed_transcript MGP_C57BL6NJ_T0094634.1 MGP_C57BL6NJ_G0035720.1 mouse_genomes_project 9 111144519 111147632 + MGP_C57BL6NJ_P0094634 Dusp7 protein_coding protein_coding MGP_C57BL6NJ_T0005588.1 MGP_C57BL6NJ_G0004729.1 mouse_genomes_project 9 33830201 33841457 - Kirrel3os antisense antisense MGP_C57BL6NJ_T0092057.1 MGP_C57BL6NJ_G0034985.1 mouse_genomes_project 9 22969980 23023671 - MGP_C57BL6NJ_P0092057 Tbx20 protein_coding protein_coding MGP_C57BL6NJ_T0092058.1 MGP_C57BL6NJ_G0034985.1 mouse_genomes_project 9 22989404 23023671 - MGP_C57BL6NJ_P0092058 Tbx20 protein_coding protein_coding MGP_C57BL6NJ_T0091596.1 MGP_C57BL6NJ_G0034801.1 mouse_genomes_project 9 1132292 1146777 - MGP_C57BL6NJ_P0091596 Aasdhppt protein_coding protein_coding MGP_C57BL6NJ_T0099173.1 MGP_C57BL6NJ_G0037237.1 mouse_genomes_project 9 33873303 33873433 + Gm23702 rRNA rRNA MGP_C57BL6NJ_T0094336.1 MGP_C57BL6NJ_G0035664.1 mouse_genomes_project 9 103738774 103834145 - MGP_C57BL6NJ_P0094336 Armc8 protein_coding protein_coding MGP_C57BL6NJ_T0094337.1 MGP_C57BL6NJ_G0035664.1 mouse_genomes_project 9 103782448 103833892 - MGP_C57BL6NJ_P0094337 Armc8 protein_coding protein_coding MGP_C57BL6NJ_T0094338.1 MGP_C57BL6NJ_G0035664.1 mouse_genomes_project 9 103814664 103833909 - Armc8 protein_coding retained_intron MGP_C57BL6NJ_T0092915.1 MGP_C57BL6NJ_G0035308.1 mouse_genomes_project 9 54290551 54347763 + MGP_C57BL6NJ_P0092915 Slc35f2 protein_coding protein_coding MGP_C57BL6NJ_T0016493.1 MGP_C57BL6NJ_G0014538.1 mouse_genomes_project 9 29741630 29742407 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016550.1 MGP_C57BL6NJ_G0014595.1 mouse_genomes_project 9 82572677 82572957 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094125.1 MGP_C57BL6NJ_G0035616.1 mouse_genomes_project 9 93700036 93774728 - MGP_C57BL6NJ_P0094125 Tbc1d2b protein_coding protein_coding MGP_C57BL6NJ_T0094126.1 MGP_C57BL6NJ_G0035616.1 mouse_genomes_project 9 93732681 93774763 - MGP_C57BL6NJ_P0094126 Tbc1d2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094127.1 MGP_C57BL6NJ_G0035616.1 mouse_genomes_project 9 93741892 93774730 - MGP_C57BL6NJ_P0094127 Tbc1d2b protein_coding protein_coding MGP_C57BL6NJ_T0094128.1 MGP_C57BL6NJ_G0035616.1 mouse_genomes_project 9 93744775 93759540 - Tbc1d2b protein_coding processed_transcript MGP_C57BL6NJ_T0092113.1 MGP_C57BL6NJ_G0035002.1 mouse_genomes_project 9 29034010 29076136 + MGP_C57BL6NJ_P0092113 Snx19 protein_coding protein_coding MGP_C57BL6NJ_T0091673.1 MGP_C57BL6NJ_G0034829.1 mouse_genomes_project 9 5635562 5770769 + MGP_C57BL6NJ_P0091673 Trpc6 protein_coding protein_coding MGP_C57BL6NJ_T0091817.1 MGP_C57BL6NJ_G0034883.1 mouse_genomes_project 9 17035326 17036256 + MGP_C57BL6NJ_P0091817 protein_coding protein_coding MGP_C57BL6NJ_T0002581.1 MGP_C57BL6NJ_G0002468.1 mouse_genomes_project 9 106503493 106509473 - TEC TEC MGP_C57BL6NJ_T0002523.1 MGP_C57BL6NJ_G0002411.1 mouse_genomes_project 9 75010890 75012331 + TEC TEC MGP_C57BL6NJ_T0102000.1 MGP_C57BL6NJ_G0040046.1 mouse_genomes_project 9 38883817 38883944 - Gm24278 snoRNA snoRNA MGP_C57BL6NJ_T0094012.1 MGP_C57BL6NJ_G0035590.1 mouse_genomes_project 9 89758755 89761498 + MGP_C57BL6NJ_P0094012 Rwdd2a protein_coding protein_coding MGP_C57BL6NJ_T0094013.1 MGP_C57BL6NJ_G0035590.1 mouse_genomes_project 9 89758780 89761664 + MGP_C57BL6NJ_P0094013 Rwdd2a protein_coding protein_coding MGP_C57BL6NJ_T0094014.1 MGP_C57BL6NJ_G0035590.1 mouse_genomes_project 9 89758817 89761605 + MGP_C57BL6NJ_P0094014 Rwdd2a protein_coding protein_coding MGP_C57BL6NJ_T0009547.1 MGP_C57BL6NJ_G0007667.1 mouse_genomes_project 9 129022771 129133689 + 9530059O14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009548.1 MGP_C57BL6NJ_G0007667.1 mouse_genomes_project 9 129022775 129032033 + 9530059O14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009549.1 MGP_C57BL6NJ_G0007667.1 mouse_genomes_project 9 129022776 129134320 + 9530059O14Rik lincRNA lincRNA MGP_C57BL6NJ_T0009467.1 MGP_C57BL6NJ_G0007606.1 mouse_genomes_project 9 79518133 79523405 + Gm19541 lincRNA lincRNA MGP_C57BL6NJ_T0098917.1 MGP_C57BL6NJ_G0036981.1 mouse_genomes_project 9 70652184 70652620 + pseudogene pseudogene MGP_C57BL6NJ_T0100709.1 MGP_C57BL6NJ_G0038755.1 mouse_genomes_project 9 51179460 51179566 + Gm25558 snRNA snRNA MGP_C57BL6NJ_T0100711.1 MGP_C57BL6NJ_G0038757.1 mouse_genomes_project 9 56177746 56177837 - Gm23407 snRNA snRNA MGP_C57BL6NJ_T0091682.1 MGP_C57BL6NJ_G0034833.1 mouse_genomes_project 9 6792056 8121800 - MGP_C57BL6NJ_P0091682 Cntn5 protein_coding protein_coding MGP_C57BL6NJ_T0091683.1 MGP_C57BL6NJ_G0034833.1 mouse_genomes_project 9 6792134 8121849 - MGP_C57BL6NJ_P0091683 Cntn5 protein_coding protein_coding MGP_C57BL6NJ_T0091684.1 MGP_C57BL6NJ_G0034833.1 mouse_genomes_project 9 6792528 7607663 - MGP_C57BL6NJ_P0091684 Cntn5 protein_coding protein_coding MGP_C57BL6NJ_T0091685.1 MGP_C57BL6NJ_G0034833.1 mouse_genomes_project 9 6792528 7607663 - MGP_C57BL6NJ_P0091685 Cntn5 protein_coding protein_coding MGP_C57BL6NJ_T0091686.1 MGP_C57BL6NJ_G0034833.1 mouse_genomes_project 9 7836834 8121523 - Cntn5 protein_coding retained_intron MGP_C57BL6NJ_T0102031.1 MGP_C57BL6NJ_G0040077.1 mouse_genomes_project 9 91281352 91281482 - Gm23176 snoRNA snoRNA MGP_C57BL6NJ_T0093685.1 MGP_C57BL6NJ_G0035510.1 mouse_genomes_project 9 74921249 75038521 + MGP_C57BL6NJ_P0093685 Prtg protein_coding protein_coding MGP_C57BL6NJ_T0093686.1 MGP_C57BL6NJ_G0035510.1 mouse_genomes_project 9 75031863 75033542 + Prtg protein_coding retained_intron MGP_C57BL6NJ_T0093561.1 MGP_C57BL6NJ_G0035488.1 mouse_genomes_project 9 71938784 71945371 - MGP_C57BL6NJ_P0093561 Gcnt3 protein_coding protein_coding MGP_C57BL6NJ_T0091751.1 MGP_C57BL6NJ_G0034853.1 mouse_genomes_project 9 12362856 12406021 - MGP_C57BL6NJ_P0091751 Panx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091752.1 MGP_C57BL6NJ_G0034853.1 mouse_genomes_project 9 12363209 12405580 - MGP_C57BL6NJ_P0091752 Panx1 protein_coding protein_coding MGP_C57BL6NJ_T0091753.1 MGP_C57BL6NJ_G0034853.1 mouse_genomes_project 9 12364989 12367580 - Panx1 protein_coding retained_intron MGP_C57BL6NJ_T0092997.1 MGP_C57BL6NJ_G0035336.1 mouse_genomes_project 9 56172003 56580563 - MGP_C57BL6NJ_P0092997 Scaper protein_coding protein_coding MGP_C57BL6NJ_T0092998.1 MGP_C57BL6NJ_G0035336.1 mouse_genomes_project 9 56365449 56599294 - MGP_C57BL6NJ_P0092998 Scaper protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094151.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 95970755 96000912 + 1700057G04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0094152.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 95970755 96018481 + MGP_C57BL6NJ_P0094152 1700057G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0094153.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 95970755 96036571 + MGP_C57BL6NJ_P0094153 1700057G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0094154.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 95970786 96025869 + 1700057G04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0094155.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 96018302 96036514 + MGP_C57BL6NJ_P0094155 1700057G04Rik protein_coding protein_coding MGP_C57BL6NJ_T0094156.1 MGP_C57BL6NJ_G0035622.1 mouse_genomes_project 9 96025882 96036571 + MGP_C57BL6NJ_P0094156 1700057G04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016565.1 MGP_C57BL6NJ_G0014610.1 mouse_genomes_project 9 90361268 90361729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002489.1 MGP_C57BL6NJ_G0002377.1 mouse_genomes_project 9 22967306 22969160 - TEC TEC MGP_C57BL6NJ_T0002502.1 MGP_C57BL6NJ_G0002390.1 mouse_genomes_project 9 57127507 57129543 - TEC TEC MGP_C57BL6NJ_T0092472.1 MGP_C57BL6NJ_G0035169.1 mouse_genomes_project 9 41552535 41717185 - MGP_C57BL6NJ_P0092472 Sorl1 protein_coding protein_coding MGP_C57BL6NJ_T0092473.1 MGP_C57BL6NJ_G0035169.1 mouse_genomes_project 9 41557554 41560690 - Sorl1 protein_coding retained_intron MGP_C57BL6NJ_T0092474.1 MGP_C57BL6NJ_G0035169.1 mouse_genomes_project 9 41563664 41570661 - Sorl1 protein_coding retained_intron MGP_C57BL6NJ_T0092475.1 MGP_C57BL6NJ_G0035169.1 mouse_genomes_project 9 41570598 41571925 - Sorl1 protein_coding processed_transcript MGP_C57BL6NJ_T0095031.1 MGP_C57BL6NJ_G0035782.1 mouse_genomes_project 9 113219472 113225245 + MGP_C57BL6NJ_P0095031 Nicn1 protein_coding protein_coding MGP_C57BL6NJ_T0095032.1 MGP_C57BL6NJ_G0035782.1 mouse_genomes_project 9 113219487 113222291 + Nicn1 protein_coding retained_intron MGP_C57BL6NJ_T0095033.1 MGP_C57BL6NJ_G0035782.1 mouse_genomes_project 9 113219498 113222259 + Nicn1 protein_coding processed_transcript MGP_C57BL6NJ_T0095034.1 MGP_C57BL6NJ_G0035782.1 mouse_genomes_project 9 113222601 113223527 + Nicn1 protein_coding retained_intron MGP_C57BL6NJ_T0093381.1 MGP_C57BL6NJ_G0035450.1 mouse_genomes_project 9 66925031 66934532 - MGP_C57BL6NJ_P0093381 Slc51b protein_coding protein_coding MGP_C57BL6NJ_T0093000.1 MGP_C57BL6NJ_G0035338.1 mouse_genomes_project 9 56729159 56750169 + MGP_C57BL6NJ_P0093000 Rcn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093001.1 MGP_C57BL6NJ_G0035338.1 mouse_genomes_project 9 56729171 56747364 + MGP_C57BL6NJ_P0093001 Rcn2 protein_coding protein_coding MGP_C57BL6NJ_T0093002.1 MGP_C57BL6NJ_G0035338.1 mouse_genomes_project 9 56729184 56731541 + Rcn2 protein_coding retained_intron MGP_C57BL6NJ_T0093003.1 MGP_C57BL6NJ_G0035338.1 mouse_genomes_project 9 56729199 56741420 + Rcn2 protein_coding retained_intron MGP_C57BL6NJ_T0095420.1 MGP_C57BL6NJ_G0035847.1 mouse_genomes_project 9 115685962 115698894 + MGP_C57BL6NJ_P0095420 Kif9 protein_coding protein_coding MGP_C57BL6NJ_T0095421.1 MGP_C57BL6NJ_G0035847.1 mouse_genomes_project 9 115685998 115742444 + MGP_C57BL6NJ_P0095421 Kif9 protein_coding protein_coding MGP_C57BL6NJ_T0095422.1 MGP_C57BL6NJ_G0035847.1 mouse_genomes_project 9 115685998 115742585 + MGP_C57BL6NJ_P0095422 Kif9 protein_coding protein_coding MGP_C57BL6NJ_T0095423.1 MGP_C57BL6NJ_G0035847.1 mouse_genomes_project 9 115685998 115739537 + MGP_C57BL6NJ_P0095423 Kif9 protein_coding protein_coding MGP_C57BL6NJ_T0095424.1 MGP_C57BL6NJ_G0035847.1 mouse_genomes_project 9 115687209 115741243 + MGP_C57BL6NJ_P0095424 Kif9 protein_coding protein_coding MGP_C57BL6NJ_T0093106.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58909683 58998808 + Stra6 protein_coding retained_intron MGP_C57BL6NJ_T0093109.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58925196 58997999 + MGP_C57BL6NJ_P0093109 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093110.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58925271 58996212 + MGP_C57BL6NJ_P0093110 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093113.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58985864 59012969 + MGP_C57BL6NJ_P0093113 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093114.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58986125 59012967 + MGP_C57BL6NJ_P0093114 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093115.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58986277 58997648 + MGP_C57BL6NJ_P0093115 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093116.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58988673 58997221 + MGP_C57BL6NJ_P0093116 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093117.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58990793 58997973 + MGP_C57BL6NJ_P0093117 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093118.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58990851 58997889 + MGP_C57BL6NJ_P0093118 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093119.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58990851 59013010 + MGP_C57BL6NJ_P0093119 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093120.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58991311 58997895 + MGP_C57BL6NJ_P0093120 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093121.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58991441 58997905 + MGP_C57BL6NJ_P0093121 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093122.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58991441 59013010 + MGP_C57BL6NJ_P0093122 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0093123.1 MGP_C57BL6NJ_G0035376.1 mouse_genomes_project 9 58991586 58996143 + MGP_C57BL6NJ_P0093123 Stra6 protein_coding protein_coding MGP_C57BL6NJ_T0092367.1 MGP_C57BL6NJ_G0035107.1 mouse_genomes_project 9 38082390 38083522 + MGP_C57BL6NJ_P0092367 Olfr922 protein_coding protein_coding MGP_C57BL6NJ_T0016486.1 MGP_C57BL6NJ_G0014531.1 mouse_genomes_project 9 10149370 10150355 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094800.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112434941 112439776 + MGP_C57BL6NJ_P0094800 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094801.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112434941 112437391 + MGP_C57BL6NJ_P0094801 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094802.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112436113 112439773 + MGP_C57BL6NJ_P0094802 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094803.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112436137 112438960 + MGP_C57BL6NJ_P0094803 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094804.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112436391 112437609 + MGP_C57BL6NJ_P0094804 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094805.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112436801 112439769 + MGP_C57BL6NJ_P0094805 Hyal2 protein_coding protein_coding MGP_C57BL6NJ_T0094806.1 MGP_C57BL6NJ_G0035752.1 mouse_genomes_project 9 112438206 112439200 + Hyal2 protein_coding retained_intron MGP_C57BL6NJ_T0094909.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112653597 112740812 - MGP_C57BL6NJ_P0094909 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094910.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112653606 112753527 - MGP_C57BL6NJ_P0094910 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094911.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112658002 112660318 - protein_coding retained_intron MGP_C57BL6NJ_T0094912.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112667584 112671195 - protein_coding retained_intron MGP_C57BL6NJ_T0094913.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112667817 112671710 - MGP_C57BL6NJ_P0094913 protein_coding protein_coding MGP_C57BL6NJ_T0094914.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112671718 112753497 - MGP_C57BL6NJ_P0094914 protein_coding protein_coding MGP_C57BL6NJ_T0094915.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112679856 112753499 - protein_coding processed_transcript MGP_C57BL6NJ_T0094916.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112691212 112726416 - protein_coding processed_transcript MGP_C57BL6NJ_T0094917.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112726301 112733039 - protein_coding retained_intron MGP_C57BL6NJ_T0094918.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112738675 112753486 - protein_coding retained_intron MGP_C57BL6NJ_T0094919.1 MGP_C57BL6NJ_G0035763.1 mouse_genomes_project 9 112749604 112754001 - protein_coding retained_intron MGP_C57BL6NJ_T0092152.1 MGP_C57BL6NJ_G0035016.1 mouse_genomes_project 9 31431327 31526472 + Ets1 protein_coding retained_intron MGP_C57BL6NJ_T0092153.1 MGP_C57BL6NJ_G0035016.1 mouse_genomes_project 9 31431345 31446568 + Ets1 protein_coding retained_intron MGP_C57BL6NJ_T0092154.1 MGP_C57BL6NJ_G0035016.1 mouse_genomes_project 9 31492236 31554781 + MGP_C57BL6NJ_P0092154 Ets1 protein_coding protein_coding MGP_C57BL6NJ_T0092155.1 MGP_C57BL6NJ_G0035016.1 mouse_genomes_project 9 31492571 31554203 + MGP_C57BL6NJ_P0092155 Ets1 protein_coding protein_coding MGP_C57BL6NJ_T0092156.1 MGP_C57BL6NJ_G0035016.1 mouse_genomes_project 9 31492571 31554206 + MGP_C57BL6NJ_P0092156 Ets1 protein_coding protein_coding MGP_C57BL6NJ_T0094722.1 MGP_C57BL6NJ_G0035739.1 mouse_genomes_project 9 111710377 111718355 - MGP_C57BL6NJ_P0094722 Rbm15b protein_coding protein_coding MGP_C57BL6NJ_T0094723.1 MGP_C57BL6NJ_G0035739.1 mouse_genomes_project 9 111714210 111715079 - MGP_C57BL6NJ_P0094723 Rbm15b protein_coding protein_coding MGP_C57BL6NJ_T0016509.1 MGP_C57BL6NJ_G0014554.1 mouse_genomes_project 9 45713593 45714600 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016541.1 MGP_C57BL6NJ_G0014586.1 mouse_genomes_project 9 79099053 79099429 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092348.1 MGP_C57BL6NJ_G0035094.1 mouse_genomes_project 9 37747485 37748418 + MGP_C57BL6NJ_P0092348 Olfr907 protein_coding protein_coding MGP_C57BL6NJ_T0009419.1 MGP_C57BL6NJ_G0007568.1 mouse_genomes_project 9 35262078 35269941 - lincRNA lincRNA MGP_C57BL6NJ_T0009420.1 MGP_C57BL6NJ_G0007568.1 mouse_genomes_project 9 35268830 35269383 - lincRNA lincRNA MGP_C57BL6NJ_T0095553.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454200 117587276 - MGP_C57BL6NJ_P0095553 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095554.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454200 117585236 - MGP_C57BL6NJ_P0095554 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095555.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454200 117587276 - MGP_C57BL6NJ_P0095555 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095556.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454200 117585459 - MGP_C57BL6NJ_P0095556 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095557.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454343 117585279 - MGP_C57BL6NJ_P0095557 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095558.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454345 117639045 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095559.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454367 117639640 - MGP_C57BL6NJ_P0095559 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095560.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454369 117637128 - MGP_C57BL6NJ_P0095560 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095561.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117454846 117587157 - MGP_C57BL6NJ_P0095561 Arpp21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095562.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117512002 117622003 - MGP_C57BL6NJ_P0095562 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095563.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117550938 117639463 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095564.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117551951 117639640 - MGP_C57BL6NJ_P0095564 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095565.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117559229 117622093 - MGP_C57BL6NJ_P0095565 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095566.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117575157 117638248 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095567.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117578634 117622068 - MGP_C57BL6NJ_P0095567 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095568.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117578680 117622068 - MGP_C57BL6NJ_P0095568 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095569.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117578718 117638437 - MGP_C57BL6NJ_P0095569 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095570.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117579598 117587436 - MGP_C57BL6NJ_P0095570 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095571.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117579598 117587439 - MGP_C57BL6NJ_P0095571 Arpp21 protein_coding protein_coding MGP_C57BL6NJ_T0095572.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117580538 117587414 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095573.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117580544 117587459 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095574.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117580573 117587436 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095575.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117582219 117587390 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095576.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117582249 117585603 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095577.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117582292 117585459 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095578.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117582546 117585446 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0095579.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117585244 117636529 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095580.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117587101 117638494 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095581.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117587138 117640560 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095582.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117587171 117587950 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095583.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117587439 117587984 - Arpp21 protein_coding processed_transcript MGP_C57BL6NJ_T0095584.1 MGP_C57BL6NJ_G0035874.1 mouse_genomes_project 9 117603376 117622046 - Arpp21 protein_coding retained_intron MGP_C57BL6NJ_T0091824.1 MGP_C57BL6NJ_G0034890.1 mouse_genomes_project 9 17277686 17278604 - MGP_C57BL6NJ_P0091824 Olfr853 protein_coding protein_coding MGP_C57BL6NJ_T0095592.1 MGP_C57BL6NJ_G0035877.1 mouse_genomes_project 9 119344713 119462348 + MGP_C57BL6NJ_P0095592 Clasp2 protein_coding protein_coding MGP_C57BL6NJ_T0095593.1 MGP_C57BL6NJ_G0035877.1 mouse_genomes_project 9 119344713 119462348 + MGP_C57BL6NJ_P0095593 Clasp2 protein_coding protein_coding MGP_C57BL6NJ_T0095594.1 MGP_C57BL6NJ_G0035877.1 mouse_genomes_project 9 119344727 119460793 + MGP_C57BL6NJ_P0095594 Clasp2 protein_coding protein_coding MGP_C57BL6NJ_T0091840.1 MGP_C57BL6NJ_G0034906.1 mouse_genomes_project 9 18180278 18199512 - MGP_C57BL6NJ_P0091840 Olfr18 protein_coding protein_coding MGP_C57BL6NJ_T0011338.1 MGP_C57BL6NJ_G0009423.1 mouse_genomes_project 9 69491919 69491998 - Mir7242 miRNA miRNA MGP_C57BL6NJ_T0092232.1 MGP_C57BL6NJ_G0035040.1 mouse_genomes_project 9 35450234 35453289 + MGP_C57BL6NJ_P0092232 Gm7257 protein_coding protein_coding MGP_C57BL6NJ_T0019065.1 MGP_C57BL6NJ_G0016159.1 mouse_genomes_project 9 130236340 130259875 + Gm17200 processed_transcript processed_transcript MGP_C57BL6NJ_T0094346.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103899744 103908045 + MGP_C57BL6NJ_P0094346 Dzip1l protein_coding protein_coding MGP_C57BL6NJ_T0094347.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103899790 103945841 + MGP_C57BL6NJ_P0094347 Dzip1l protein_coding protein_coding MGP_C57BL6NJ_T0094348.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103899826 103945841 + MGP_C57BL6NJ_P0094348 Dzip1l protein_coding protein_coding MGP_C57BL6NJ_T0094349.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103900091 103945841 + MGP_C57BL6NJ_P0094349 Dzip1l protein_coding protein_coding MGP_C57BL6NJ_T0094350.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103905109 103945748 + MGP_C57BL6NJ_P0094350 Dzip1l protein_coding protein_coding MGP_C57BL6NJ_T0094351.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103917888 103924730 + Dzip1l protein_coding processed_transcript MGP_C57BL6NJ_T0094352.1 MGP_C57BL6NJ_G0035667.1 mouse_genomes_project 9 103924009 103927479 + Dzip1l protein_coding retained_intron MGP_C57BL6NJ_T0095780.1 MGP_C57BL6NJ_G0035942.1 mouse_genomes_project 9 127834459 127840320 - MGP_C57BL6NJ_P0095780 Cck protein_coding protein_coding MGP_C57BL6NJ_T0100733.1 MGP_C57BL6NJ_G0038779.1 mouse_genomes_project 9 87224639 87224824 + Gm26146 snRNA snRNA MGP_C57BL6NJ_T0091660.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4982386 5064876 - MGP_C57BL6NJ_P0091660 Yap1 protein_coding protein_coding MGP_C57BL6NJ_T0091661.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4982386 5064884 - MGP_C57BL6NJ_P0091661 Yap1 protein_coding protein_coding MGP_C57BL6NJ_T0091662.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4984884 5064678 - MGP_C57BL6NJ_P0091662 Yap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091663.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4984884 5064678 - MGP_C57BL6NJ_P0091663 Yap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091664.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4984884 5061991 - MGP_C57BL6NJ_P0091664 Yap1 protein_coding protein_coding MGP_C57BL6NJ_T0091665.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 4984884 5064678 - MGP_C57BL6NJ_P0091665 Yap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091666.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 5018795 5022309 - Yap1 protein_coding processed_transcript MGP_C57BL6NJ_T0091667.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 5030283 5064045 - Yap1 protein_coding processed_transcript MGP_C57BL6NJ_T0091668.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 5030325 5064063 - Yap1 protein_coding processed_transcript MGP_C57BL6NJ_T0091669.1 MGP_C57BL6NJ_G0034825.1 mouse_genomes_project 9 5057195 5064884 - Yap1 protein_coding retained_intron MGP_C57BL6NJ_T0016570.1 MGP_C57BL6NJ_G0014615.1 mouse_genomes_project 9 91416000 91416586 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005603.1 MGP_C57BL6NJ_G0004741.1 mouse_genomes_project 9 51610263 51615960 + 2010007H06Rik antisense antisense MGP_C57BL6NJ_T0005604.1 MGP_C57BL6NJ_G0004741.1 mouse_genomes_project 9 51612045 51612671 + 2010007H06Rik antisense antisense MGP_C57BL6NJ_T0011998.1 MGP_C57BL6NJ_G0010083.1 mouse_genomes_project 9 18688664 18688985 + Gm26274 misc_RNA misc_RNA MGP_C57BL6NJ_T0092157.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33381284 33384549 + MGP_C57BL6NJ_P0092157 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092158.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33381515 33405965 + Kirrel3 protein_coding processed_transcript MGP_C57BL6NJ_T0092159.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33381516 33955568 + MGP_C57BL6NJ_P0092159 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092160.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33384123 33957004 + MGP_C57BL6NJ_P0092160 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092161.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33384185 33957004 + MGP_C57BL6NJ_P0092161 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092162.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33384185 33951166 + MGP_C57BL6NJ_P0092162 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092163.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33384218 33956598 + MGP_C57BL6NJ_P0092163 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092164.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33384326 33956598 + MGP_C57BL6NJ_P0092164 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0092165.1 MGP_C57BL6NJ_G0035017.1 mouse_genomes_project 9 33936739 33951164 + MGP_C57BL6NJ_P0092165 Kirrel3 protein_coding protein_coding MGP_C57BL6NJ_T0016552.1 MGP_C57BL6NJ_G0014597.1 mouse_genomes_project 9 83705896 83706890 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094866.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112551094 112556333 - MGP_C57BL6NJ_P0094866 Gnat1 protein_coding protein_coding MGP_C57BL6NJ_T0094867.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112551097 112556255 - Gnat1 protein_coding retained_intron MGP_C57BL6NJ_T0094868.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112551917 112553062 - Gnat1 protein_coding retained_intron MGP_C57BL6NJ_T0094869.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112552865 112555046 - Gnat1 protein_coding processed_transcript MGP_C57BL6NJ_T0094870.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112553555 112556235 - Gnat1 protein_coding retained_intron MGP_C57BL6NJ_T0094871.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112553594 112556206 - MGP_C57BL6NJ_P0094871 Gnat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094872.1 MGP_C57BL6NJ_G0035760.1 mouse_genomes_project 9 112553994 112554956 - Gnat1 protein_coding processed_transcript MGP_C57BL6NJ_T0092129.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30070000 30107875 + MGP_C57BL6NJ_P0092129 Nfrkb protein_coding protein_coding MGP_C57BL6NJ_T0092130.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30070005 30107875 + MGP_C57BL6NJ_P0092130 Nfrkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092131.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30070012 30078828 + MGP_C57BL6NJ_P0092131 Nfrkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092132.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30070021 30107875 + MGP_C57BL6NJ_P0092132 Nfrkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092133.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30070025 30106722 + MGP_C57BL6NJ_P0092133 Nfrkb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092134.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30076473 30084076 + Nfrkb protein_coding retained_intron MGP_C57BL6NJ_T0092135.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30082109 30084048 + Nfrkb protein_coding retained_intron MGP_C57BL6NJ_T0092136.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30084096 30107875 + Nfrkb protein_coding retained_intron MGP_C57BL6NJ_T0092137.1 MGP_C57BL6NJ_G0035009.1 mouse_genomes_project 9 30094241 30095287 + Nfrkb protein_coding retained_intron MGP_C57BL6NJ_T0005676.1 MGP_C57BL6NJ_G0004787.1 mouse_genomes_project 9 103989643 104033440 + Gm16004 antisense antisense MGP_C57BL6NJ_T0094927.1 MGP_C57BL6NJ_G0035767.1 mouse_genomes_project 9 112823497 112837515 + MGP_C57BL6NJ_P0094927 Camkv protein_coding protein_coding MGP_C57BL6NJ_T0094928.1 MGP_C57BL6NJ_G0035767.1 mouse_genomes_project 9 112823721 112837501 + Camkv protein_coding retained_intron MGP_C57BL6NJ_T0094929.1 MGP_C57BL6NJ_G0035767.1 mouse_genomes_project 9 112823731 112834012 + MGP_C57BL6NJ_P0094929 Camkv protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094930.1 MGP_C57BL6NJ_G0035767.1 mouse_genomes_project 9 112825123 112833361 + MGP_C57BL6NJ_P0094930 Camkv protein_coding protein_coding MGP_C57BL6NJ_T0094931.1 MGP_C57BL6NJ_G0035767.1 mouse_genomes_project 9 112833082 112837507 + MGP_C57BL6NJ_P0094931 Camkv protein_coding protein_coding MGP_C57BL6NJ_T0092380.1 MGP_C57BL6NJ_G0035120.1 mouse_genomes_project 9 38465305 38484708 + MGP_C57BL6NJ_P0092380 Olfr943 protein_coding protein_coding MGP_C57BL6NJ_T0016540.1 MGP_C57BL6NJ_G0014585.1 mouse_genomes_project 9 79091359 79092113 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093915.1 MGP_C57BL6NJ_G0035572.1 mouse_genomes_project 9 83074202 83221371 - MGP_C57BL6NJ_P0093915 Impg1 protein_coding protein_coding MGP_C57BL6NJ_T0093916.1 MGP_C57BL6NJ_G0035572.1 mouse_genomes_project 9 83074865 83221414 - MGP_C57BL6NJ_P0093916 Impg1 protein_coding protein_coding MGP_C57BL6NJ_T0093917.1 MGP_C57BL6NJ_G0035572.1 mouse_genomes_project 9 83149988 83221371 - MGP_C57BL6NJ_P0093917 Impg1 protein_coding protein_coding MGP_C57BL6NJ_T0100747.1 MGP_C57BL6NJ_G0038793.1 mouse_genomes_project 9 111636928 111637032 - Gm22384 snRNA snRNA MGP_C57BL6NJ_T0092873.1 MGP_C57BL6NJ_G0035293.1 mouse_genomes_project 9 51621244 51663361 - MGP_C57BL6NJ_P0092873 1810046K07Rik protein_coding protein_coding MGP_C57BL6NJ_T0092874.1 MGP_C57BL6NJ_G0035293.1 mouse_genomes_project 9 51622002 51647141 - MGP_C57BL6NJ_P0092874 1810046K07Rik protein_coding protein_coding MGP_C57BL6NJ_T0093650.1 MGP_C57BL6NJ_G0035506.1 mouse_genomes_project 9 74500646 74511289 + MGP_C57BL6NJ_P0093650 Mns1 protein_coding protein_coding MGP_C57BL6NJ_T0093651.1 MGP_C57BL6NJ_G0035506.1 mouse_genomes_project 9 74501161 74515302 + MGP_C57BL6NJ_P0093651 Mns1 protein_coding protein_coding MGP_C57BL6NJ_T0093652.1 MGP_C57BL6NJ_G0035506.1 mouse_genomes_project 9 74501170 74524585 + MGP_C57BL6NJ_P0093652 Mns1 protein_coding protein_coding MGP_C57BL6NJ_T0092891.1 MGP_C57BL6NJ_G0035301.1 mouse_genomes_project 9 53884491 53904977 + MGP_C57BL6NJ_P0092891 Kdelc2 protein_coding protein_coding MGP_C57BL6NJ_T0092089.1 MGP_C57BL6NJ_G0034997.1 mouse_genomes_project 9 25479982 25537868 - MGP_C57BL6NJ_P0092089 Jam3 protein_coding protein_coding MGP_C57BL6NJ_T0092090.1 MGP_C57BL6NJ_G0034997.1 mouse_genomes_project 9 25483265 25537865 - MGP_C57BL6NJ_P0092090 Jam3 protein_coding protein_coding MGP_C57BL6NJ_T0093724.1 MGP_C57BL6NJ_G0035521.1 mouse_genomes_project 9 75636902 76171243 - MGP_C57BL6NJ_P0093724 Unc13c protein_coding protein_coding MGP_C57BL6NJ_T0093725.1 MGP_C57BL6NJ_G0035521.1 mouse_genomes_project 9 75636906 76171241 - MGP_C57BL6NJ_P0093725 Unc13c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093726.1 MGP_C57BL6NJ_G0035521.1 mouse_genomes_project 9 75638346 76144970 - MGP_C57BL6NJ_P0093726 Unc13c protein_coding protein_coding MGP_C57BL6NJ_T0094699.1 MGP_C57BL6NJ_G0035734.1 mouse_genomes_project 9 111451288 111456297 - MGP_C57BL6NJ_P0094699 Grm2 protein_coding protein_coding MGP_C57BL6NJ_T0094700.1 MGP_C57BL6NJ_G0035734.1 mouse_genomes_project 9 111451310 111464212 - MGP_C57BL6NJ_P0094700 Grm2 protein_coding protein_coding MGP_C57BL6NJ_T0094701.1 MGP_C57BL6NJ_G0035734.1 mouse_genomes_project 9 111453078 111464214 - MGP_C57BL6NJ_P0094701 Grm2 protein_coding protein_coding MGP_C57BL6NJ_T0094702.1 MGP_C57BL6NJ_G0035734.1 mouse_genomes_project 9 111453177 111454807 - Grm2 protein_coding processed_transcript MGP_C57BL6NJ_T0016568.1 MGP_C57BL6NJ_G0014613.1 mouse_genomes_project 9 91301892 91302496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102027.1 MGP_C57BL6NJ_G0040073.1 mouse_genomes_project 9 88583091 88583227 + Gm25125 snoRNA snoRNA MGP_C57BL6NJ_T0092388.1 MGP_C57BL6NJ_G0035128.1 mouse_genomes_project 9 38856471 38857407 - MGP_C57BL6NJ_P0092388 Olfr957 protein_coding protein_coding MGP_C57BL6NJ_T0092222.1 MGP_C57BL6NJ_G0035032.1 mouse_genomes_project 9 34626972 34629265 - MGP_C57BL6NJ_P0092222 Pate1 protein_coding protein_coding MGP_C57BL6NJ_T0092223.1 MGP_C57BL6NJ_G0035032.1 mouse_genomes_project 9 34627318 34629284 - Pate1 protein_coding retained_intron MGP_C57BL6NJ_T0095912.1 MGP_C57BL6NJ_G0035985.1 mouse_genomes_project 9 130413617 130422777 - MGP_C57BL6NJ_P0095912 Xcr1 protein_coding protein_coding MGP_C57BL6NJ_T0005638.1 MGP_C57BL6NJ_G0004762.1 mouse_genomes_project 9 74686683 74687511 - Gm27232 antisense antisense MGP_C57BL6NJ_T0092786.1 MGP_C57BL6NJ_G0035272.1 mouse_genomes_project 9 50828583 50832909 - MGP_C57BL6NJ_P0092786 Tex12 protein_coding protein_coding MGP_C57BL6NJ_T0016599.1 MGP_C57BL6NJ_G0014644.1 mouse_genomes_project 9 100849125 100849393 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099186.1 MGP_C57BL6NJ_G0037250.1 mouse_genomes_project 9 107517485 107517589 - n-R5s89 rRNA rRNA MGP_C57BL6NJ_T0093761.1 MGP_C57BL6NJ_G0035527.1 mouse_genomes_project 9 77542476 77622183 + MGP_C57BL6NJ_P0093761 Myo5c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094159.1 MGP_C57BL6NJ_G0035624.1 mouse_genomes_project 9 96225704 96296962 + MGP_C57BL6NJ_P0094159 Plod2 protein_coding protein_coding MGP_C57BL6NJ_T0094160.1 MGP_C57BL6NJ_G0035624.1 mouse_genomes_project 9 96225745 96296954 + MGP_C57BL6NJ_P0094160 Plod2 protein_coding protein_coding MGP_C57BL6NJ_T0094161.1 MGP_C57BL6NJ_G0035624.1 mouse_genomes_project 9 96258254 96280218 + Plod2 protein_coding retained_intron MGP_C57BL6NJ_T0094162.1 MGP_C57BL6NJ_G0035624.1 mouse_genomes_project 9 96283878 96289600 + Plod2 protein_coding retained_intron MGP_C57BL6NJ_T0094163.1 MGP_C57BL6NJ_G0035624.1 mouse_genomes_project 9 96289875 96291151 + Plod2 protein_coding retained_intron MGP_C57BL6NJ_T0005623.1 MGP_C57BL6NJ_G0004752.1 mouse_genomes_project 9 68070422 68073318 - Gm28379 antisense antisense MGP_C57BL6NJ_T0005624.1 MGP_C57BL6NJ_G0004752.1 mouse_genomes_project 9 68070979 68100775 - Gm28379 antisense antisense MGP_C57BL6NJ_T0016622.1 MGP_C57BL6NJ_G0014667.1 mouse_genomes_project 9 110249611 110250002 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095890.1 MGP_C57BL6NJ_G0035980.1 mouse_genomes_project 9 130188340 130237130 - MGP_C57BL6NJ_P0095890 Slc6a20a protein_coding protein_coding MGP_C57BL6NJ_T0095891.1 MGP_C57BL6NJ_G0035980.1 mouse_genomes_project 9 130189214 130237051 - MGP_C57BL6NJ_P0095891 Slc6a20a protein_coding protein_coding MGP_C57BL6NJ_T0095892.1 MGP_C57BL6NJ_G0035980.1 mouse_genomes_project 9 130214288 130237027 - MGP_C57BL6NJ_P0095892 Slc6a20a protein_coding protein_coding MGP_C57BL6NJ_T0005677.1 MGP_C57BL6NJ_G0004788.1 mouse_genomes_project 9 108020459 108043242 + Gm16252 antisense antisense MGP_C57BL6NJ_T0093094.1 MGP_C57BL6NJ_G0035372.1 mouse_genomes_project 9 58748689 58769824 + MGP_C57BL6NJ_P0093094 Ubl7 protein_coding protein_coding MGP_C57BL6NJ_T0094761.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264291 112396342 + MGP_C57BL6NJ_P0094761 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094762.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264291 112396342 + MGP_C57BL6NJ_P0094762 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094763.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264559 112395992 + MGP_C57BL6NJ_P0094763 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094764.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264559 112396342 + MGP_C57BL6NJ_P0094764 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094765.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264723 112396342 + MGP_C57BL6NJ_P0094765 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094766.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112264748 112394463 + MGP_C57BL6NJ_P0094766 Cacna2d2 protein_coding protein_coding MGP_C57BL6NJ_T0094767.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112370996 112378966 + Cacna2d2 protein_coding processed_transcript MGP_C57BL6NJ_T0094768.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112374711 112379328 + Cacna2d2 protein_coding processed_transcript MGP_C57BL6NJ_T0094769.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112388510 112390485 + Cacna2d2 protein_coding retained_intron MGP_C57BL6NJ_T0094770.1 MGP_C57BL6NJ_G0035745.1 mouse_genomes_project 9 112393655 112394566 + Cacna2d2 protein_coding retained_intron MGP_C57BL6NJ_T0005710.1 MGP_C57BL6NJ_G0004814.1 mouse_genomes_project 9 115899372 115907238 - Gm42762 antisense antisense MGP_C57BL6NJ_T0005695.1 MGP_C57BL6NJ_G0004802.1 mouse_genomes_project 9 112414565 112417765 - Gm34106 antisense antisense MGP_C57BL6NJ_T0093414.1 MGP_C57BL6NJ_G0035460.1 mouse_genomes_project 9 67465537 67481336 + MGP_C57BL6NJ_P0093414 2810417H13Rik protein_coding protein_coding MGP_C57BL6NJ_T0093415.1 MGP_C57BL6NJ_G0035460.1 mouse_genomes_project 9 67465620 67469121 + 2810417H13Rik protein_coding retained_intron MGP_C57BL6NJ_T0093416.1 MGP_C57BL6NJ_G0035460.1 mouse_genomes_project 9 67465662 67468449 + 2810417H13Rik protein_coding retained_intron MGP_C57BL6NJ_T0092119.1 MGP_C57BL6NJ_G0035006.1 mouse_genomes_project 9 29736830 29779131 - MGP_C57BL6NJ_P0092119 St14 protein_coding protein_coding MGP_C57BL6NJ_T0092120.1 MGP_C57BL6NJ_G0035006.1 mouse_genomes_project 9 29746708 29779074 - St14 protein_coding retained_intron MGP_C57BL6NJ_T0092121.1 MGP_C57BL6NJ_G0035006.1 mouse_genomes_project 9 29747308 29750225 - St14 protein_coding retained_intron MGP_C57BL6NJ_T0092122.1 MGP_C57BL6NJ_G0035006.1 mouse_genomes_project 9 29753443 29779074 - MGP_C57BL6NJ_P0092122 St14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091628.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4361363 4366770 + MGP_C57BL6NJ_P0091628 Mmp12 protein_coding protein_coding MGP_C57BL6NJ_T0091629.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4361379 4376012 + MGP_C57BL6NJ_P0091629 Mmp12 protein_coding protein_coding MGP_C57BL6NJ_T0091630.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4364356 4392627 + MGP_C57BL6NJ_P0091630 Mmp12 protein_coding protein_coding MGP_C57BL6NJ_T0091631.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4364356 4378009 + MGP_C57BL6NJ_P0091631 Mmp12 protein_coding protein_coding MGP_C57BL6NJ_T0091632.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4364388 4375211 + Mmp12 protein_coding retained_intron MGP_C57BL6NJ_T0091633.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4364388 4365316 + Mmp12 protein_coding processed_transcript MGP_C57BL6NJ_T0091634.1 MGP_C57BL6NJ_G0034813.1 mouse_genomes_project 9 4364388 4376436 + MGP_C57BL6NJ_P0091634 Mmp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093882.1 MGP_C57BL6NJ_G0035568.1 mouse_genomes_project 9 82494116 82521298 - MGP_C57BL6NJ_P0093882 Tmem30a protein_coding protein_coding MGP_C57BL6NJ_T0093883.1 MGP_C57BL6NJ_G0035568.1 mouse_genomes_project 9 82494116 82521375 - MGP_C57BL6NJ_P0093883 Tmem30a protein_coding protein_coding MGP_C57BL6NJ_T0093884.1 MGP_C57BL6NJ_G0035568.1 mouse_genomes_project 9 82497715 82521298 - Tmem30a protein_coding retained_intron MGP_C57BL6NJ_T0093885.1 MGP_C57BL6NJ_G0035568.1 mouse_genomes_project 9 82502017 82521298 - Tmem30a protein_coding retained_intron MGP_C57BL6NJ_T0016618.1 MGP_C57BL6NJ_G0014663.1 mouse_genomes_project 9 107952135 107952512 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092965.1 MGP_C57BL6NJ_G0035330.1 mouse_genomes_project 9 55741239 55802344 + MGP_C57BL6NJ_P0092965 Ube2q2 protein_coding protein_coding MGP_C57BL6NJ_T0092966.1 MGP_C57BL6NJ_G0035330.1 mouse_genomes_project 9 55741479 55803479 + MGP_C57BL6NJ_P0092966 Ube2q2 protein_coding protein_coding MGP_C57BL6NJ_T0092967.1 MGP_C57BL6NJ_G0035330.1 mouse_genomes_project 9 55789493 55802155 + Ube2q2 protein_coding retained_intron MGP_C57BL6NJ_T0095605.1 MGP_C57BL6NJ_G0035881.1 mouse_genomes_project 9 119924502 119925209 + MGP_C57BL6NJ_P0095605 protein_coding protein_coding MGP_C57BL6NJ_T0009407.1 MGP_C57BL6NJ_G0007558.1 mouse_genomes_project 9 29728045 29729904 - Gm17508 lincRNA lincRNA MGP_C57BL6NJ_T0094060.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91734951 91776530 - MGP_C57BL6NJ_P0094060 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094061.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91740379 91774399 - MGP_C57BL6NJ_P0094061 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094062.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91740582 91775739 - MGP_C57BL6NJ_P0094062 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094063.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91740631 91776287 - MGP_C57BL6NJ_P0094063 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094064.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91741880 91775739 - MGP_C57BL6NJ_P0094064 Syncrip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094065.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91743510 91776530 - MGP_C57BL6NJ_P0094065 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094066.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91744070 91774387 - MGP_C57BL6NJ_P0094066 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094067.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91744070 91776134 - MGP_C57BL6NJ_P0094067 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094068.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91758262 91774378 - Syncrip protein_coding retained_intron MGP_C57BL6NJ_T0094069.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91770526 91774803 - MGP_C57BL6NJ_P0094069 Syncrip protein_coding protein_coding MGP_C57BL6NJ_T0094070.1 MGP_C57BL6NJ_G0035602.1 mouse_genomes_project 9 91772386 91774858 - Syncrip protein_coding retained_intron MGP_C57BL6NJ_T0095174.1 MGP_C57BL6NJ_G0035803.1 mouse_genomes_project 9 113661520 113663910 + Slc25a20 protein_coding retained_intron MGP_C57BL6NJ_T0095175.1 MGP_C57BL6NJ_G0035803.1 mouse_genomes_project 9 113661530 113687647 + MGP_C57BL6NJ_P0095175 Slc25a20 protein_coding protein_coding MGP_C57BL6NJ_T0095176.1 MGP_C57BL6NJ_G0035803.1 mouse_genomes_project 9 113674187 113682310 + Slc25a20 protein_coding retained_intron MGP_C57BL6NJ_T0016604.1 MGP_C57BL6NJ_G0014649.1 mouse_genomes_project 9 102435604 102437941 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016620.1 MGP_C57BL6NJ_G0014665.1 mouse_genomes_project 9 108756613 108757226 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095862.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129579029 129626084 - MGP_C57BL6NJ_P0095862 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095863.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129587015 129626142 - MGP_C57BL6NJ_P0095863 Zdhhc3 protein_coding protein_coding MGP_C57BL6NJ_T0095864.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129589701 129626117 - MGP_C57BL6NJ_P0095864 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095865.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129590369 129626103 - MGP_C57BL6NJ_P0095865 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095866.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129590909 129626115 - MGP_C57BL6NJ_P0095866 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095867.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129591169 129613292 - MGP_C57BL6NJ_P0095867 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095868.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129593227 129626058 - MGP_C57BL6NJ_P0095868 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095869.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129595717 129626141 - Zdhhc3 protein_coding retained_intron MGP_C57BL6NJ_T0095870.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129597165 129626061 - MGP_C57BL6NJ_P0095870 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095871.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129601902 129626115 - MGP_C57BL6NJ_P0095871 Zdhhc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095872.1 MGP_C57BL6NJ_G0035971.1 mouse_genomes_project 9 129613262 129625769 - MGP_C57BL6NJ_P0095872 Zdhhc3 protein_coding protein_coding MGP_C57BL6NJ_T0091838.1 MGP_C57BL6NJ_G0034904.1 mouse_genomes_project 9 18148524 18152810 + MGP_C57BL6NJ_P0091838 Olfr39 protein_coding protein_coding MGP_C57BL6NJ_T0092088.1 MGP_C57BL6NJ_G0034996.1 mouse_genomes_project 9 25398390 25477403 + MGP_C57BL6NJ_P0092088 Ncapd3 protein_coding protein_coding MGP_C57BL6NJ_T0018974.1 MGP_C57BL6NJ_G0016127.1 mouse_genomes_project 9 34812404 34814407 - Gm3428 processed_transcript TEC MGP_C57BL6NJ_T0018975.1 MGP_C57BL6NJ_G0016127.1 mouse_genomes_project 9 34813015 34814351 - Gm3428 processed_transcript lincRNA MGP_C57BL6NJ_T0018976.1 MGP_C57BL6NJ_G0016127.1 mouse_genomes_project 9 34813056 34814403 - Gm3428 processed_transcript lincRNA MGP_C57BL6NJ_T0093918.1 MGP_C57BL6NJ_G0035573.1 mouse_genomes_project 9 84481438 84486954 - MGP_C57BL6NJ_P0093918 Htr1b protein_coding protein_coding MGP_C57BL6NJ_T0093919.1 MGP_C57BL6NJ_G0035573.1 mouse_genomes_project 9 84484468 84485741 - MGP_C57BL6NJ_P0093919 Htr1b protein_coding protein_coding MGP_C57BL6NJ_T0102025.1 MGP_C57BL6NJ_G0040071.1 mouse_genomes_project 9 80587292 80587419 - Gm23609 snoRNA snoRNA MGP_C57BL6NJ_T0002565.1 MGP_C57BL6NJ_G0002452.1 mouse_genomes_project 9 102884351 102884866 - TEC TEC MGP_C57BL6NJ_T0093719.1 MGP_C57BL6NJ_G0035519.1 mouse_genomes_project 9 75236834 75253626 + MGP_C57BL6NJ_P0093719 Gm20509 protein_coding protein_coding MGP_C57BL6NJ_T0016576.1 MGP_C57BL6NJ_G0014621.1 mouse_genomes_project 9 93503999 93504642 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009523.1 MGP_C57BL6NJ_G0007651.1 mouse_genomes_project 9 113549581 113551223 + 4833445I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0009524.1 MGP_C57BL6NJ_G0007651.1 mouse_genomes_project 9 113549941 113550823 + 4833445I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0092286.1 MGP_C57BL6NJ_G0035052.1 mouse_genomes_project 9 36332058 36360192 - MGP_C57BL6NJ_P0092286 Slc37a2 protein_coding protein_coding MGP_C57BL6NJ_T0092287.1 MGP_C57BL6NJ_G0035052.1 mouse_genomes_project 9 36333225 36359868 - MGP_C57BL6NJ_P0092287 Slc37a2 protein_coding protein_coding MGP_C57BL6NJ_T0092288.1 MGP_C57BL6NJ_G0035052.1 mouse_genomes_project 9 36333421 36338064 - Slc37a2 protein_coding retained_intron MGP_C57BL6NJ_T0102028.1 MGP_C57BL6NJ_G0040074.1 mouse_genomes_project 9 88908519 88908649 - Gm22830 snoRNA snoRNA MGP_C57BL6NJ_T0002542.1 MGP_C57BL6NJ_G0002429.1 mouse_genomes_project 9 89920260 89922783 + TEC TEC MGP_C57BL6NJ_T0091986.1 MGP_C57BL6NJ_G0034954.1 mouse_genomes_project 9 19851909 19853746 + MGP_C57BL6NJ_P0091986 Angptl8 protein_coding protein_coding MGP_C57BL6NJ_T0005703.1 MGP_C57BL6NJ_G0004807.1 mouse_genomes_project 9 112881832 112885805 - 4921523L03Rik antisense antisense MGP_C57BL6NJ_T0011359.1 MGP_C57BL6NJ_G0009444.1 mouse_genomes_project 9 113550825 113550910 + Mir425 miRNA miRNA MGP_C57BL6NJ_T0002527.1 MGP_C57BL6NJ_G0002415.1 mouse_genomes_project 9 75735389 75737417 - TEC TEC MGP_C57BL6NJ_T0093546.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919838 71930188 + MGP_C57BL6NJ_P0093546 Gtf2a2 protein_coding protein_coding MGP_C57BL6NJ_T0093547.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919842 71930060 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093548.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919853 71930059 + MGP_C57BL6NJ_P0093548 Gtf2a2 protein_coding protein_coding MGP_C57BL6NJ_T0093549.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919854 71930060 + MGP_C57BL6NJ_P0093549 Gtf2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093550.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919856 71929837 + Gtf2a2 protein_coding processed_transcript MGP_C57BL6NJ_T0093551.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919859 71925543 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093552.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919859 71930059 + MGP_C57BL6NJ_P0093552 Gtf2a2 protein_coding protein_coding MGP_C57BL6NJ_T0093553.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919862 71926796 + MGP_C57BL6NJ_P0093553 Gtf2a2 protein_coding protein_coding MGP_C57BL6NJ_T0093554.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919867 71926791 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093555.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919872 71922927 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093556.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919883 71926808 + MGP_C57BL6NJ_P0093556 Gtf2a2 protein_coding protein_coding MGP_C57BL6NJ_T0093557.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71919931 71930060 + MGP_C57BL6NJ_P0093557 Gtf2a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093558.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71923100 71930059 + Gtf2a2 protein_coding processed_transcript MGP_C57BL6NJ_T0093559.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71924107 71927232 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093560.1 MGP_C57BL6NJ_G0035487.1 mouse_genomes_project 9 71926369 71930059 + Gtf2a2 protein_coding retained_intron MGP_C57BL6NJ_T0093868.1 MGP_C57BL6NJ_G0035562.1 mouse_genomes_project 9 81125906 81127357 - MGP_C57BL6NJ_P0093868 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0102048.1 MGP_C57BL6NJ_G0040094.1 mouse_genomes_project 9 117946361 117946493 + Gm24957 snoRNA snoRNA MGP_C57BL6NJ_T0016595.1 MGP_C57BL6NJ_G0014640.1 mouse_genomes_project 9 99581962 99582551 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092667.1 MGP_C57BL6NJ_G0035233.1 mouse_genomes_project 9 45636565 45703511 - MGP_C57BL6NJ_P0092667 Cep164 protein_coding protein_coding MGP_C57BL6NJ_T0092668.1 MGP_C57BL6NJ_G0035233.1 mouse_genomes_project 9 45637877 45703380 - MGP_C57BL6NJ_P0092668 Cep164 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092669.1 MGP_C57BL6NJ_G0035233.1 mouse_genomes_project 9 45640359 45642151 - Cep164 protein_coding retained_intron MGP_C57BL6NJ_T0092670.1 MGP_C57BL6NJ_G0035233.1 mouse_genomes_project 9 45649400 45675468 - MGP_C57BL6NJ_P0092670 Cep164 protein_coding protein_coding MGP_C57BL6NJ_T0092211.1 MGP_C57BL6NJ_G0035027.1 mouse_genomes_project 9 34488048 34496589 + Pus3 protein_coding retained_intron MGP_C57BL6NJ_T0092212.1 MGP_C57BL6NJ_G0035027.1 mouse_genomes_project 9 34488913 34496852 + MGP_C57BL6NJ_P0092212 Pus3 protein_coding protein_coding MGP_C57BL6NJ_T0092213.1 MGP_C57BL6NJ_G0035027.1 mouse_genomes_project 9 34488919 34496290 + MGP_C57BL6NJ_P0092213 Pus3 protein_coding protein_coding MGP_C57BL6NJ_T0093284.1 MGP_C57BL6NJ_G0035419.1 mouse_genomes_project 9 64459003 64469795 - MGP_C57BL6NJ_P0093284 Skor1 protein_coding protein_coding MGP_C57BL6NJ_T0093285.1 MGP_C57BL6NJ_G0035419.1 mouse_genomes_project 9 64459003 64467845 - MGP_C57BL6NJ_P0093285 Skor1 protein_coding protein_coding MGP_C57BL6NJ_T0093286.1 MGP_C57BL6NJ_G0035419.1 mouse_genomes_project 9 64459009 64467814 - MGP_C57BL6NJ_P0093286 Skor1 protein_coding protein_coding MGP_C57BL6NJ_T0002606.1 MGP_C57BL6NJ_G0002493.1 mouse_genomes_project 9 113926685 113927224 - TEC TEC MGP_C57BL6NJ_T0012009.1 MGP_C57BL6NJ_G0010094.1 mouse_genomes_project 9 102884329 102884436 - Gm27919 misc_RNA misc_RNA MGP_C57BL6NJ_T0093281.1 MGP_C57BL6NJ_G0035417.1 mouse_genomes_project 9 64148013 64168071 + MGP_C57BL6NJ_P0093281 Calml4 protein_coding protein_coding MGP_C57BL6NJ_T0093282.1 MGP_C57BL6NJ_G0035417.1 mouse_genomes_project 9 64148013 64168071 + MGP_C57BL6NJ_P0093282 Calml4 protein_coding protein_coding MGP_C57BL6NJ_T0093062.1 MGP_C57BL6NJ_G0035356.1 mouse_genomes_project 9 58205182 58234159 - MGP_C57BL6NJ_P0093062 Ppcdc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092499.1 MGP_C57BL6NJ_G0035181.1 mouse_genomes_project 9 43533429 43535983 + MGP_C57BL6NJ_P0092499 Gm3898 protein_coding protein_coding MGP_C57BL6NJ_T0092140.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30863525 31029279 + MGP_C57BL6NJ_P0092140 Arhgap32 protein_coding protein_coding MGP_C57BL6NJ_T0092141.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30876959 30933613 + MGP_C57BL6NJ_P0092141 Arhgap32 protein_coding protein_coding MGP_C57BL6NJ_T0092142.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30933557 30962975 + Arhgap32 protein_coding retained_intron MGP_C57BL6NJ_T0092143.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30962059 31022051 + MGP_C57BL6NJ_P0092143 Arhgap32 protein_coding protein_coding MGP_C57BL6NJ_T0092144.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30984173 31025078 + MGP_C57BL6NJ_P0092144 Arhgap32 protein_coding protein_coding MGP_C57BL6NJ_T0092145.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 30984516 31007001 + MGP_C57BL6NJ_P0092145 Arhgap32 protein_coding protein_coding MGP_C57BL6NJ_T0092146.1 MGP_C57BL6NJ_G0035012.1 mouse_genomes_project 9 31006181 31010482 + Arhgap32 protein_coding retained_intron MGP_C57BL6NJ_T0093084.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58619099 58667014 - MGP_C57BL6NJ_P0093084 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093085.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58619102 58667016 - MGP_C57BL6NJ_P0093085 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093086.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58619105 58620395 - Arid3b protein_coding processed_transcript MGP_C57BL6NJ_T0093087.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58619259 58664544 - MGP_C57BL6NJ_P0093087 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093088.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58620907 58624980 - MGP_C57BL6NJ_P0093088 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093089.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58621169 58666786 - MGP_C57BL6NJ_P0093089 Arid3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093090.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58623444 58667069 - MGP_C57BL6NJ_P0093090 Arid3b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093091.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58623445 58667101 - MGP_C57BL6NJ_P0093091 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093092.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58626908 58650942 - MGP_C57BL6NJ_P0093092 Arid3b protein_coding protein_coding MGP_C57BL6NJ_T0093093.1 MGP_C57BL6NJ_G0035371.1 mouse_genomes_project 9 58636888 58667078 - Arid3b protein_coding retained_intron MGP_C57BL6NJ_T0092055.1 MGP_C57BL6NJ_G0034983.1 mouse_genomes_project 9 22792804 22948312 - MGP_C57BL6NJ_P0092055 Dpy19l2 protein_coding protein_coding MGP_C57BL6NJ_T0094345.1 MGP_C57BL6NJ_G0035666.1 mouse_genomes_project 9 103880379 103892744 + MGP_C57BL6NJ_P0094345 A4gnt protein_coding protein_coding MGP_C57BL6NJ_T0095010.1 MGP_C57BL6NJ_G0035778.1 mouse_genomes_project 9 112989425 112993993 + MGP_C57BL6NJ_P0095010 Mst1 protein_coding protein_coding MGP_C57BL6NJ_T0095011.1 MGP_C57BL6NJ_G0035778.1 mouse_genomes_project 9 112989443 112993985 + MGP_C57BL6NJ_P0095011 Mst1 protein_coding protein_coding MGP_C57BL6NJ_T0095012.1 MGP_C57BL6NJ_G0035778.1 mouse_genomes_project 9 112989472 112991304 + MGP_C57BL6NJ_P0095012 Mst1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095013.1 MGP_C57BL6NJ_G0035778.1 mouse_genomes_project 9 112993294 112993988 + MGP_C57BL6NJ_P0095013 Mst1 protein_coding protein_coding MGP_C57BL6NJ_T0093599.1 MGP_C57BL6NJ_G0035502.1 mouse_genomes_project 9 73522426 73619723 - Myzap protein_coding retained_intron MGP_C57BL6NJ_T0093600.1 MGP_C57BL6NJ_G0035502.1 mouse_genomes_project 9 73522426 73619723 - MGP_C57BL6NJ_P0093600 Myzap protein_coding protein_coding MGP_C57BL6NJ_T0093601.1 MGP_C57BL6NJ_G0035502.1 mouse_genomes_project 9 73523137 73619628 - MGP_C57BL6NJ_P0093601 Myzap protein_coding protein_coding MGP_C57BL6NJ_T0093602.1 MGP_C57BL6NJ_G0035502.1 mouse_genomes_project 9 73586645 73606570 - MGP_C57BL6NJ_P0093602 Myzap protein_coding protein_coding MGP_C57BL6NJ_T0093603.1 MGP_C57BL6NJ_G0035502.1 mouse_genomes_project 9 73590099 73619705 - MGP_C57BL6NJ_P0093603 Myzap protein_coding protein_coding MGP_C57BL6NJ_T0092398.1 MGP_C57BL6NJ_G0035132.1 mouse_genomes_project 9 38966424 38967441 + MGP_C57BL6NJ_P0092398 Olfr148 protein_coding protein_coding MGP_C57BL6NJ_T0092638.1 MGP_C57BL6NJ_G0035219.1 mouse_genomes_project 9 44815478 44826326 - MGP_C57BL6NJ_P0092638 Cd3e protein_coding protein_coding MGP_C57BL6NJ_T0093126.1 MGP_C57BL6NJ_G0035378.1 mouse_genomes_project 9 59058704 59064692 - MGP_C57BL6NJ_P0093126 Islr2 protein_coding protein_coding MGP_C57BL6NJ_T0093127.1 MGP_C57BL6NJ_G0035378.1 mouse_genomes_project 9 59058704 59066726 - MGP_C57BL6NJ_P0093127 Islr2 protein_coding protein_coding MGP_C57BL6NJ_T0093128.1 MGP_C57BL6NJ_G0035378.1 mouse_genomes_project 9 59058704 59064941 - MGP_C57BL6NJ_P0093128 Islr2 protein_coding protein_coding MGP_C57BL6NJ_T0093129.1 MGP_C57BL6NJ_G0035378.1 mouse_genomes_project 9 59058704 59064206 - MGP_C57BL6NJ_P0093129 Islr2 protein_coding protein_coding MGP_C57BL6NJ_T0093130.1 MGP_C57BL6NJ_G0035378.1 mouse_genomes_project 9 59058704 59064122 - MGP_C57BL6NJ_P0093130 Islr2 protein_coding protein_coding MGP_C57BL6NJ_T0018996.1 MGP_C57BL6NJ_G0016132.1 mouse_genomes_project 9 57810758 57827646 - Gm10658 processed_transcript processed_transcript MGP_C57BL6NJ_T0018997.1 MGP_C57BL6NJ_G0016132.1 mouse_genomes_project 9 57811331 57827805 - Gm10658 processed_transcript processed_transcript MGP_C57BL6NJ_T0094524.1 MGP_C57BL6NJ_G0035701.1 mouse_genomes_project 9 108874323 108923513 - MGP_C57BL6NJ_P0094524 Acpp protein_coding protein_coding MGP_C57BL6NJ_T0094525.1 MGP_C57BL6NJ_G0035701.1 mouse_genomes_project 9 108877056 108887233 - Acpp protein_coding processed_transcript MGP_C57BL6NJ_T0094526.1 MGP_C57BL6NJ_G0035701.1 mouse_genomes_project 9 108885007 108923492 - MGP_C57BL6NJ_P0094526 Acpp protein_coding protein_coding MGP_C57BL6NJ_T0094527.1 MGP_C57BL6NJ_G0035701.1 mouse_genomes_project 9 108892680 108923467 - Acpp protein_coding retained_intron MGP_C57BL6NJ_T0094528.1 MGP_C57BL6NJ_G0035701.1 mouse_genomes_project 9 108904947 108923492 - Acpp protein_coding retained_intron MGP_C57BL6NJ_T0005631.1 MGP_C57BL6NJ_G0004757.1 mouse_genomes_project 9 71331250 71333820 - Gm16144 antisense antisense MGP_C57BL6NJ_T0100714.1 MGP_C57BL6NJ_G0038760.1 mouse_genomes_project 9 64766895 64767037 + Gm25995 snRNA snRNA MGP_C57BL6NJ_T0093863.1 MGP_C57BL6NJ_G0035561.1 mouse_genomes_project 9 81085933 81121499 + MGP_C57BL6NJ_P0093863 Mto1 protein_coding protein_coding MGP_C57BL6NJ_T0093864.1 MGP_C57BL6NJ_G0035561.1 mouse_genomes_project 9 81085933 81121499 + MGP_C57BL6NJ_P0093864 Mto1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093865.1 MGP_C57BL6NJ_G0035561.1 mouse_genomes_project 9 81107496 81116737 + Mto1 protein_coding retained_intron MGP_C57BL6NJ_T0093866.1 MGP_C57BL6NJ_G0035561.1 mouse_genomes_project 9 81107789 81122695 + MGP_C57BL6NJ_P0093866 Mto1 protein_coding protein_coding MGP_C57BL6NJ_T0093867.1 MGP_C57BL6NJ_G0035561.1 mouse_genomes_project 9 81116388 81121180 + Mto1 protein_coding retained_intron MGP_C57BL6NJ_T0002616.1 MGP_C57BL6NJ_G0002503.1 mouse_genomes_project 9 124386721 124387559 - TEC TEC MGP_C57BL6NJ_T0092064.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25076768 25104457 + MGP_C57BL6NJ_P0092064 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0092065.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25076843 25099120 + MGP_C57BL6NJ_P0092065 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0092066.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25076864 25106216 + MGP_C57BL6NJ_P0092066 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0092067.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25076891 25101023 + MGP_C57BL6NJ_P0092067 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0092068.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25094602 25104445 + MGP_C57BL6NJ_P0092068 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0092069.1 MGP_C57BL6NJ_G0034989.1 mouse_genomes_project 9 25098324 25106222 + MGP_C57BL6NJ_P0092069 B3gat1 protein_coding protein_coding MGP_C57BL6NJ_T0091984.1 MGP_C57BL6NJ_G0034952.1 mouse_genomes_project 9 19776009 19809604 - MGP_C57BL6NJ_P0091984 Kank2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095647.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124013182 124039744 + MGP_C57BL6NJ_P0095647 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0095648.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124013240 124037221 + MGP_C57BL6NJ_P0095648 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0095649.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124013262 124034966 + MGP_C57BL6NJ_P0095649 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0095650.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124013299 124045699 + MGP_C57BL6NJ_P0095650 Azi2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095651.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124013370 124022897 + Azi2 protein_coding retained_intron MGP_C57BL6NJ_T0095652.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124021991 124036971 + MGP_C57BL6NJ_P0095652 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0095653.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124022052 124024261 + Azi2 protein_coding retained_intron MGP_C57BL6NJ_T0095654.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124023488 124036366 + MGP_C57BL6NJ_P0095654 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0095655.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124028108 124036268 + Azi2 protein_coding retained_intron MGP_C57BL6NJ_T0095656.1 MGP_C57BL6NJ_G0035902.1 mouse_genomes_project 9 124033516 124036742 + MGP_C57BL6NJ_P0095656 Azi2 protein_coding protein_coding MGP_C57BL6NJ_T0091603.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2216124 2234944 + MGP_C57BL6NJ_P0091603 Casp4 protein_coding protein_coding MGP_C57BL6NJ_T0091604.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2216145 2249033 + MGP_C57BL6NJ_P0091604 Casp4 protein_coding protein_coding MGP_C57BL6NJ_T0091605.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2216156 2240452 + Casp4 protein_coding retained_intron MGP_C57BL6NJ_T0091606.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2216156 2239562 + MGP_C57BL6NJ_P0091606 Casp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091607.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2216161 2232971 + Casp4 protein_coding retained_intron MGP_C57BL6NJ_T0091608.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2232629 2248339 + MGP_C57BL6NJ_P0091608 Casp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091609.1 MGP_C57BL6NJ_G0034806.1 mouse_genomes_project 9 2234578 2238446 + Casp4 protein_coding retained_intron MGP_C57BL6NJ_T0093192.1 MGP_C57BL6NJ_G0035398.1 mouse_genomes_project 9 60737132 60753863 - MGP_C57BL6NJ_P0093192 Senp8 protein_coding protein_coding MGP_C57BL6NJ_T0093193.1 MGP_C57BL6NJ_G0035398.1 mouse_genomes_project 9 60737132 60753863 - MGP_C57BL6NJ_P0093193 Senp8 protein_coding protein_coding MGP_C57BL6NJ_T0016571.1 MGP_C57BL6NJ_G0014616.1 mouse_genomes_project 9 91562000 91562822 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092239.1 MGP_C57BL6NJ_G0035045.1 mouse_genomes_project 9 35726865 35732498 + MGP_C57BL6NJ_P0092239 Acrv1 protein_coding protein_coding MGP_C57BL6NJ_T0092240.1 MGP_C57BL6NJ_G0035045.1 mouse_genomes_project 9 35726899 35731020 + Acrv1 protein_coding retained_intron MGP_C57BL6NJ_T0095282.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114082070 114106707 + MGP_C57BL6NJ_P0095282 Plxnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095283.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114082633 114087180 + MGP_C57BL6NJ_P0095283 Plxnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095284.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114083391 114087180 + MGP_C57BL6NJ_P0095284 Plxnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095285.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114091644 114095672 + MGP_C57BL6NJ_P0095285 Plxnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095286.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114092193 114093500 + Plxnb1 protein_coding retained_intron MGP_C57BL6NJ_T0095287.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114092655 114093624 + Plxnb1 protein_coding retained_intron MGP_C57BL6NJ_T0095288.1 MGP_C57BL6NJ_G0035820.1 mouse_genomes_project 9 114093486 114095701 + Plxnb1 protein_coding retained_intron MGP_C57BL6NJ_T0091903.1 MGP_C57BL6NJ_G0034921.1 mouse_genomes_project 9 18777427 18781677 - MGP_C57BL6NJ_P0091903 Eif3g protein_coding protein_coding MGP_C57BL6NJ_T0002602.1 MGP_C57BL6NJ_G0002489.1 mouse_genomes_project 9 113444181 113445196 + TEC TEC MGP_C57BL6NJ_T0011351.1 MGP_C57BL6NJ_G0009436.1 mouse_genomes_project 9 109654360 109654464 + Gm23391 miRNA miRNA MGP_C57BL6NJ_T0093881.1 MGP_C57BL6NJ_G0035567.1 mouse_genomes_project 9 82480411 82485023 - MGP_C57BL6NJ_P0093881 Cox7a2 protein_coding protein_coding MGP_C57BL6NJ_T0009401.1 MGP_C57BL6NJ_G0007552.1 mouse_genomes_project 9 19373175 19379654 - Gm16853 lincRNA lincRNA MGP_C57BL6NJ_T0093477.1 MGP_C57BL6NJ_G0035472.1 mouse_genomes_project 9 68490833 68492869 + MGP_C57BL6NJ_P0093477 Gm10647 protein_coding protein_coding MGP_C57BL6NJ_T0092370.1 MGP_C57BL6NJ_G0035110.1 mouse_genomes_project 9 38147390 38148779 + MGP_C57BL6NJ_P0092370 protein_coding protein_coding MGP_C57BL6NJ_T0092743.1 MGP_C57BL6NJ_G0035250.1 mouse_genomes_project 9 48417525 48443331 - MGP_C57BL6NJ_P0092743 Nxpe2 protein_coding protein_coding MGP_C57BL6NJ_T0092744.1 MGP_C57BL6NJ_G0035250.1 mouse_genomes_project 9 48418663 48443267 - MGP_C57BL6NJ_P0092744 Nxpe2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092745.1 MGP_C57BL6NJ_G0035250.1 mouse_genomes_project 9 48427132 48456017 - MGP_C57BL6NJ_P0092745 Nxpe2 protein_coding protein_coding MGP_C57BL6NJ_T0092746.1 MGP_C57BL6NJ_G0035250.1 mouse_genomes_project 9 48431917 48443287 - Nxpe2 protein_coding processed_transcript MGP_C57BL6NJ_T0092747.1 MGP_C57BL6NJ_G0035250.1 mouse_genomes_project 9 48432245 48456017 - Nxpe2 protein_coding processed_transcript MGP_C57BL6NJ_T0095851.1 MGP_C57BL6NJ_G0035965.1 mouse_genomes_project 9 129380237 129387891 + MGP_C57BL6NJ_P0095851 Zkscan7 protein_coding protein_coding MGP_C57BL6NJ_T0009542.1 MGP_C57BL6NJ_G0007662.1 mouse_genomes_project 9 124956238 124957141 + Gm16295 lincRNA lincRNA MGP_C57BL6NJ_T0093531.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71306749 71346017 + MGP_C57BL6NJ_P0093531 Anxa2 protein_coding protein_coding MGP_C57BL6NJ_T0093532.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71306845 71339479 + MGP_C57BL6NJ_P0093532 Anxa2 protein_coding protein_coding MGP_C57BL6NJ_T0093533.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71307195 71338081 + MGP_C57BL6NJ_P0093533 Anxa2 protein_coding protein_coding MGP_C57BL6NJ_T0093534.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71332686 71346017 + Anxa2 protein_coding retained_intron MGP_C57BL6NJ_T0093535.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71334332 71345735 + MGP_C57BL6NJ_P0093535 Anxa2 protein_coding protein_coding MGP_C57BL6NJ_T0093536.1 MGP_C57BL6NJ_G0035484.1 mouse_genomes_project 9 71341004 71342330 + Anxa2 protein_coding retained_intron MGP_C57BL6NJ_T0016587.1 MGP_C57BL6NJ_G0014632.1 mouse_genomes_project 9 96371935 96372749 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094843.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112482564 112505108 - MGP_C57BL6NJ_P0094843 Gnai2 protein_coding protein_coding MGP_C57BL6NJ_T0094844.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112482564 112505053 - MGP_C57BL6NJ_P0094844 Gnai2 protein_coding protein_coding MGP_C57BL6NJ_T0094845.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112483379 112484487 - Gnai2 protein_coding retained_intron MGP_C57BL6NJ_T0094846.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112484095 112484952 - Gnai2 protein_coding retained_intron MGP_C57BL6NJ_T0094847.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112484940 112496352 - MGP_C57BL6NJ_P0094847 Gnai2 protein_coding protein_coding MGP_C57BL6NJ_T0094848.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112489339 112505075 - Gnai2 protein_coding retained_intron MGP_C57BL6NJ_T0094849.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112489771 112490708 - Gnai2 protein_coding retained_intron MGP_C57BL6NJ_T0094850.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112489893 112505078 - MGP_C57BL6NJ_P0094850 Gnai2 protein_coding protein_coding MGP_C57BL6NJ_T0094851.1 MGP_C57BL6NJ_G0035758.1 mouse_genomes_project 9 112504840 112505084 - MGP_C57BL6NJ_P0094851 Gnai2 protein_coding protein_coding MGP_C57BL6NJ_T0093364.1 MGP_C57BL6NJ_G0035440.1 mouse_genomes_project 9 66508355 66561330 + MGP_C57BL6NJ_P0093364 Dpp8 protein_coding protein_coding MGP_C57BL6NJ_T0093365.1 MGP_C57BL6NJ_G0035440.1 mouse_genomes_project 9 66508619 66559670 + MGP_C57BL6NJ_P0093365 Dpp8 protein_coding protein_coding MGP_C57BL6NJ_T0019020.1 MGP_C57BL6NJ_G0016142.1 mouse_genomes_project 9 82646590 82647022 + Gm3211 processed_transcript processed_transcript MGP_C57BL6NJ_T0099177.1 MGP_C57BL6NJ_G0037241.1 mouse_genomes_project 9 63756112 63756221 + n-R5s84 rRNA rRNA MGP_C57BL6NJ_T0016635.1 MGP_C57BL6NJ_G0014680.1 mouse_genomes_project 9 122944871 122945233 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095042.1 MGP_C57BL6NJ_G0035785.1 mouse_genomes_project 9 113239584 113244685 + Rhoa protein_coding retained_intron MGP_C57BL6NJ_T0095043.1 MGP_C57BL6NJ_G0035785.1 mouse_genomes_project 9 113239942 113280231 + MGP_C57BL6NJ_P0095043 Rhoa protein_coding protein_coding MGP_C57BL6NJ_T0095044.1 MGP_C57BL6NJ_G0035785.1 mouse_genomes_project 9 113239974 113272352 + MGP_C57BL6NJ_P0095044 Rhoa protein_coding protein_coding MGP_C57BL6NJ_T0095045.1 MGP_C57BL6NJ_G0035785.1 mouse_genomes_project 9 113271995 113280248 + Rhoa protein_coding retained_intron MGP_C57BL6NJ_T0005670.1 MGP_C57BL6NJ_G0004782.1 mouse_genomes_project 9 101139788 101142995 + Gm16185 antisense antisense MGP_C57BL6NJ_T0091815.1 MGP_C57BL6NJ_G0034881.1 mouse_genomes_project 9 16830451 16831406 + MGP_C57BL6NJ_P0091815 Olfr836 protein_coding protein_coding MGP_C57BL6NJ_T0094157.1 MGP_C57BL6NJ_G0035623.1 mouse_genomes_project 9 96131412 96168181 + MGP_C57BL6NJ_P0094157 Plscr4 protein_coding protein_coding MGP_C57BL6NJ_T0094158.1 MGP_C57BL6NJ_G0035623.1 mouse_genomes_project 9 96131433 96161069 + Plscr4 protein_coding retained_intron MGP_C57BL6NJ_T0009456.1 MGP_C57BL6NJ_G0007596.1 mouse_genomes_project 9 74228113 74228562 - Gm27159 lincRNA lincRNA MGP_C57BL6NJ_T0094080.1 MGP_C57BL6NJ_G0035608.1 mouse_genomes_project 9 92436443 92446498 - MGP_C57BL6NJ_P0094080 protein_coding protein_coding MGP_C57BL6NJ_T0100746.1 MGP_C57BL6NJ_G0038792.1 mouse_genomes_project 9 110731460 110731541 + Gm24631 snRNA snRNA MGP_C57BL6NJ_T0009519.1 MGP_C57BL6NJ_G0007648.1 mouse_genomes_project 9 112214765 112215528 - 4930429P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0009520.1 MGP_C57BL6NJ_G0007648.1 mouse_genomes_project 9 112215263 112217464 - 4930429P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0095632.1 MGP_C57BL6NJ_G0035899.1 mouse_genomes_project 9 121875875 121970840 - MGP_C57BL6NJ_P0095632 Tgfbr2 protein_coding protein_coding MGP_C57BL6NJ_T0095633.1 MGP_C57BL6NJ_G0035899.1 mouse_genomes_project 9 121875875 121970840 - MGP_C57BL6NJ_P0095633 Tgfbr2 protein_coding protein_coding MGP_C57BL6NJ_T0094405.1 MGP_C57BL6NJ_G0035678.1 mouse_genomes_project 9 106383152 106387893 + MGP_C57BL6NJ_P0094405 9630041A04Rik protein_coding protein_coding MGP_C57BL6NJ_T0091723.1 MGP_C57BL6NJ_G0034845.1 mouse_genomes_project 9 11871909 11940071 - MGP_C57BL6NJ_P0091723 Amotl1 protein_coding protein_coding MGP_C57BL6NJ_T0091724.1 MGP_C57BL6NJ_G0034845.1 mouse_genomes_project 9 11879790 11883169 - Amotl1 protein_coding retained_intron MGP_C57BL6NJ_T0091725.1 MGP_C57BL6NJ_G0034845.1 mouse_genomes_project 9 11918863 11940772 - MGP_C57BL6NJ_P0091725 Amotl1 protein_coding protein_coding MGP_C57BL6NJ_T0091726.1 MGP_C57BL6NJ_G0034845.1 mouse_genomes_project 9 11918897 11939875 - MGP_C57BL6NJ_P0091726 Amotl1 protein_coding protein_coding MGP_C57BL6NJ_T0093592.1 MGP_C57BL6NJ_G0035499.1 mouse_genomes_project 9 73218169 73300862 + MGP_C57BL6NJ_P0093592 Aldh1a2 protein_coding protein_coding MGP_C57BL6NJ_T0094019.1 MGP_C57BL6NJ_G0035592.1 mouse_genomes_project 9 89954742 89973690 + MGP_C57BL6NJ_P0094019 Prss35 protein_coding protein_coding MGP_C57BL6NJ_T0094020.1 MGP_C57BL6NJ_G0035592.1 mouse_genomes_project 9 89954742 89973861 + MGP_C57BL6NJ_P0094020 Prss35 protein_coding protein_coding MGP_C57BL6NJ_T0092779.1 MGP_C57BL6NJ_G0035268.1 mouse_genomes_project 9 49719039 49763325 + MGP_C57BL6NJ_P0092779 Gm11149 protein_coding protein_coding MGP_C57BL6NJ_T0091982.1 MGP_C57BL6NJ_G0034950.1 mouse_genomes_project 9 19723915 19751667 + MGP_C57BL6NJ_P0091982 Ldlr protein_coding protein_coding MGP_C57BL6NJ_T0093687.1 MGP_C57BL6NJ_G0035511.1 mouse_genomes_project 9 75051983 75078520 + MGP_C57BL6NJ_P0093687 Pygo1 protein_coding protein_coding MGP_C57BL6NJ_T0016569.1 MGP_C57BL6NJ_G0014614.1 mouse_genomes_project 9 91391595 91393066 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094759.1 MGP_C57BL6NJ_G0035744.1 mouse_genomes_project 9 112200014 112211015 + MGP_C57BL6NJ_P0094759 6430571L13Rik protein_coding protein_coding MGP_C57BL6NJ_T0094760.1 MGP_C57BL6NJ_G0035744.1 mouse_genomes_project 9 112209452 112215900 + 6430571L13Rik protein_coding processed_transcript MGP_C57BL6NJ_T0095413.1 MGP_C57BL6NJ_G0035845.1 mouse_genomes_project 9 115618767 115622035 + MGP_C57BL6NJ_P0095413 Ngp protein_coding protein_coding MGP_C57BL6NJ_T0100737.1 MGP_C57BL6NJ_G0038783.1 mouse_genomes_project 9 93817418 93817589 + Gm22717 snRNA snRNA MGP_C57BL6NJ_T0093058.1 MGP_C57BL6NJ_G0035352.1 mouse_genomes_project 9 57902046 57906681 - MGP_C57BL6NJ_P0093058 Neil1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102016.1 MGP_C57BL6NJ_G0040062.1 mouse_genomes_project 9 66350572 66350714 - Gm24347 snoRNA snoRNA MGP_C57BL6NJ_T0009457.1 MGP_C57BL6NJ_G0007597.1 mouse_genomes_project 9 74258294 74281978 - Gm27188 lincRNA lincRNA MGP_C57BL6NJ_T0095331.1 MGP_C57BL6NJ_G0035836.1 mouse_genomes_project 9 114987203 114991069 - MGP_C57BL6NJ_P0095331 Camp protein_coding protein_coding MGP_C57BL6NJ_T0093368.1 MGP_C57BL6NJ_G0035442.1 mouse_genomes_project 9 66623381 66671460 + MGP_C57BL6NJ_P0093368 Igdcc3 protein_coding protein_coding MGP_C57BL6NJ_T0011361.1 MGP_C57BL6NJ_G0009446.1 mouse_genomes_project 9 113949826 113949908 + Mir711 miRNA miRNA MGP_C57BL6NJ_T0092371.1 MGP_C57BL6NJ_G0035111.1 mouse_genomes_project 9 38200378 38201418 + MGP_C57BL6NJ_P0092371 Olfr930 protein_coding protein_coding MGP_C57BL6NJ_T0092558.1 MGP_C57BL6NJ_G0035197.1 mouse_genomes_project 9 44106382 44122333 - MGP_C57BL6NJ_P0092558 Vps11 protein_coding protein_coding MGP_C57BL6NJ_T0009458.1 MGP_C57BL6NJ_G0007598.1 mouse_genomes_project 9 74467401 74468012 + Gm27255 lincRNA lincRNA MGP_C57BL6NJ_T0094303.1 MGP_C57BL6NJ_G0035654.1 mouse_genomes_project 9 103055245 103057062 + MGP_C57BL6NJ_P0094303 Prr23a3 protein_coding protein_coding MGP_C57BL6NJ_T0091760.1 MGP_C57BL6NJ_G0034858.1 mouse_genomes_project 9 12688406 12695355 + MGP_C57BL6NJ_P0091760 Taf1d protein_coding protein_coding MGP_C57BL6NJ_T0091761.1 MGP_C57BL6NJ_G0034858.1 mouse_genomes_project 9 12688406 12695355 + MGP_C57BL6NJ_P0091761 Taf1d protein_coding protein_coding MGP_C57BL6NJ_T0095658.1 MGP_C57BL6NJ_G0035904.1 mouse_genomes_project 9 124468156 124475308 + MGP_C57BL6NJ_P0095658 Eomes protein_coding protein_coding MGP_C57BL6NJ_T0095659.1 MGP_C57BL6NJ_G0035904.1 mouse_genomes_project 9 124468288 124476074 + MGP_C57BL6NJ_P0095659 Eomes protein_coding protein_coding MGP_C57BL6NJ_T0095660.1 MGP_C57BL6NJ_G0035904.1 mouse_genomes_project 9 124468805 124472702 + MGP_C57BL6NJ_P0095660 Eomes protein_coding protein_coding MGP_C57BL6NJ_T0094266.1 MGP_C57BL6NJ_G0035642.1 mouse_genomes_project 9 100990993 101069333 - MGP_C57BL6NJ_P0094266 Spsb4 protein_coding protein_coding MGP_C57BL6NJ_T0094267.1 MGP_C57BL6NJ_G0035642.1 mouse_genomes_project 9 100990996 101031689 - Spsb4 protein_coding processed_transcript MGP_C57BL6NJ_T0094268.1 MGP_C57BL6NJ_G0035642.1 mouse_genomes_project 9 100991483 101019469 - Spsb4 protein_coding processed_transcript MGP_C57BL6NJ_T0094269.1 MGP_C57BL6NJ_G0035642.1 mouse_genomes_project 9 101041541 101069254 - Spsb4 protein_coding retained_intron MGP_C57BL6NJ_T0093211.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 60982823 61552310 - MGP_C57BL6NJ_P0093211 Thsd4 protein_coding protein_coding MGP_C57BL6NJ_T0093212.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 60982823 61566219 - MGP_C57BL6NJ_P0093212 Thsd4 protein_coding protein_coding MGP_C57BL6NJ_T0093213.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 60985611 61162765 - MGP_C57BL6NJ_P0093213 Thsd4 protein_coding protein_coding MGP_C57BL6NJ_T0093214.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 61010177 61018687 - Thsd4 protein_coding retained_intron MGP_C57BL6NJ_T0093215.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 61473133 61579917 - MGP_C57BL6NJ_P0093215 Thsd4 protein_coding protein_coding MGP_C57BL6NJ_T0093216.1 MGP_C57BL6NJ_G0035401.1 mouse_genomes_project 9 61565058 61566191 - Thsd4 protein_coding processed_transcript MGP_C57BL6NJ_T0018963.1 MGP_C57BL6NJ_G0016123.1 mouse_genomes_project 9 5022325 5033492 + Gm20416 processed_transcript processed_transcript MGP_C57BL6NJ_T0092481.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42022335 42083349 - MGP_C57BL6NJ_P0092481 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092482.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42022335 42068713 - MGP_C57BL6NJ_P0092482 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092483.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42023437 42072575 - MGP_C57BL6NJ_P0092483 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092484.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42024009 42038262 - Tbcel protein_coding processed_transcript MGP_C57BL6NJ_T0092485.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42025694 42083356 - MGP_C57BL6NJ_P0092485 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092486.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42025808 42083309 - MGP_C57BL6NJ_P0092486 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092487.1 MGP_C57BL6NJ_G0035172.1 mouse_genomes_project 9 42059930 42123918 - MGP_C57BL6NJ_P0092487 Tbcel protein_coding protein_coding MGP_C57BL6NJ_T0092540.1 MGP_C57BL6NJ_G0035189.1 mouse_genomes_project 9 43990129 43994282 - MGP_C57BL6NJ_P0092540 Pdzd3 protein_coding protein_coding MGP_C57BL6NJ_T0005724.1 MGP_C57BL6NJ_G0004824.1 mouse_genomes_project 9 130187606 130189544 + Gm17120 antisense antisense MGP_C57BL6NJ_T0016589.1 MGP_C57BL6NJ_G0014634.1 mouse_genomes_project 9 97118923 97119926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094447.1 MGP_C57BL6NJ_G0035686.1 mouse_genomes_project 9 107628333 107681173 + Rab6b protein_coding processed_transcript MGP_C57BL6NJ_T0094448.1 MGP_C57BL6NJ_G0035686.1 mouse_genomes_project 9 107628353 107703791 + MGP_C57BL6NJ_P0094448 Rab6b protein_coding protein_coding MGP_C57BL6NJ_T0092823.1 MGP_C57BL6NJ_G0035280.1 mouse_genomes_project 9 51022582 51029405 - MGP_C57BL6NJ_P0092823 2310030G06Rik protein_coding protein_coding MGP_C57BL6NJ_T0009437.1 MGP_C57BL6NJ_G0007582.1 mouse_genomes_project 9 57936761 57947700 + 1700041C23Rik lincRNA lincRNA MGP_C57BL6NJ_T0002582.1 MGP_C57BL6NJ_G0002469.1 mouse_genomes_project 9 106629305 106633672 + TEC TEC MGP_C57BL6NJ_T0092410.1 MGP_C57BL6NJ_G0035144.1 mouse_genomes_project 9 39287735 39288680 + MGP_C57BL6NJ_P0092410 Olfr972 protein_coding protein_coding MGP_C57BL6NJ_T0093712.1 MGP_C57BL6NJ_G0035517.1 mouse_genomes_project 9 75177051 75232000 + MGP_C57BL6NJ_P0093712 Rab27a protein_coding protein_coding MGP_C57BL6NJ_T0093713.1 MGP_C57BL6NJ_G0035517.1 mouse_genomes_project 9 75177054 75231963 + MGP_C57BL6NJ_P0093713 Rab27a protein_coding protein_coding MGP_C57BL6NJ_T0093714.1 MGP_C57BL6NJ_G0035517.1 mouse_genomes_project 9 75177181 75218857 + Rab27a protein_coding retained_intron MGP_C57BL6NJ_T0093715.1 MGP_C57BL6NJ_G0035517.1 mouse_genomes_project 9 75229203 75230786 + Rab27a protein_coding retained_intron MGP_C57BL6NJ_T0092582.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485054 44526840 - MGP_C57BL6NJ_P0092582 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092583.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485058 44537461 - MGP_C57BL6NJ_P0092583 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092584.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485058 44512010 - MGP_C57BL6NJ_P0092584 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092585.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485058 44511985 - MGP_C57BL6NJ_P0092585 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092586.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485058 44514368 - MGP_C57BL6NJ_P0092586 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092587.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485058 44526819 - MGP_C57BL6NJ_P0092587 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092588.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485060 44515125 - MGP_C57BL6NJ_P0092588 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092589.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485060 44500478 - MGP_C57BL6NJ_P0092589 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092590.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44485060 44526840 - MGP_C57BL6NJ_P0092590 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092591.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44486384 44496590 - Phldb1 protein_coding retained_intron MGP_C57BL6NJ_T0092592.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44493208 44495176 - Phldb1 protein_coding retained_intron MGP_C57BL6NJ_T0092593.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44496478 44502853 - MGP_C57BL6NJ_P0092593 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092594.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44499706 44509691 - MGP_C57BL6NJ_P0092594 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092595.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44501783 44537513 - MGP_C57BL6NJ_P0092595 Phldb1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092596.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44502317 44507172 - MGP_C57BL6NJ_P0092596 Phldb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092597.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44514868 44520169 - MGP_C57BL6NJ_P0092597 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092598.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44515038 44520132 - MGP_C57BL6NJ_P0092598 Phldb1 protein_coding protein_coding MGP_C57BL6NJ_T0092599.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44517076 44526090 - Phldb1 protein_coding retained_intron MGP_C57BL6NJ_T0092600.1 MGP_C57BL6NJ_G0035209.1 mouse_genomes_project 9 44524749 44525226 - Phldb1 protein_coding processed_transcript MGP_C57BL6NJ_T0095313.1 MGP_C57BL6NJ_G0035832.1 mouse_genomes_project 9 114776250 114815173 - MGP_C57BL6NJ_P0095313 Fbxw18 protein_coding protein_coding MGP_C57BL6NJ_T0102029.1 MGP_C57BL6NJ_G0040075.1 mouse_genomes_project 9 89912075 89912203 + Gm22138 snoRNA snoRNA MGP_C57BL6NJ_T0093845.1 MGP_C57BL6NJ_G0035554.1 mouse_genomes_project 9 80916884 80917877 - MGP_C57BL6NJ_P0093845 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093846.1 MGP_C57BL6NJ_G0035554.1 mouse_genomes_project 9 80916884 80929581 - MGP_C57BL6NJ_P0093846 protein_coding protein_coding MGP_C57BL6NJ_T0093848.1 MGP_C57BL6NJ_G0035554.1 mouse_genomes_project 9 80916916 80918916 - protein_coding processed_transcript MGP_C57BL6NJ_T0093849.1 MGP_C57BL6NJ_G0035554.1 mouse_genomes_project 9 80916916 80918931 - MGP_C57BL6NJ_P0093849 protein_coding protein_coding MGP_C57BL6NJ_T0093852.1 MGP_C57BL6NJ_G0035554.1 mouse_genomes_project 9 80917215 80918362 - MGP_C57BL6NJ_P0093852 protein_coding protein_coding MGP_C57BL6NJ_T0092147.1 MGP_C57BL6NJ_G0035013.1 mouse_genomes_project 9 31077783 31111711 - MGP_C57BL6NJ_P0092147 Kcnj5 protein_coding protein_coding MGP_C57BL6NJ_T0094007.1 MGP_C57BL6NJ_G0035589.1 mouse_genomes_project 9 89738210 89758592 - MGP_C57BL6NJ_P0094007 Pgm3 protein_coding protein_coding MGP_C57BL6NJ_T0094008.1 MGP_C57BL6NJ_G0035589.1 mouse_genomes_project 9 89738834 89758593 - MGP_C57BL6NJ_P0094008 Pgm3 protein_coding protein_coding MGP_C57BL6NJ_T0094009.1 MGP_C57BL6NJ_G0035589.1 mouse_genomes_project 9 89739089 89741774 - Pgm3 protein_coding retained_intron MGP_C57BL6NJ_T0094010.1 MGP_C57BL6NJ_G0035589.1 mouse_genomes_project 9 89739514 89758558 - Pgm3 protein_coding retained_intron MGP_C57BL6NJ_T0094011.1 MGP_C57BL6NJ_G0035589.1 mouse_genomes_project 9 89740356 89758607 - Pgm3 protein_coding retained_intron MGP_C57BL6NJ_T0092637.1 MGP_C57BL6NJ_G0035218.1 mouse_genomes_project 9 44797816 44803075 + MGP_C57BL6NJ_P0092637 Cd3d protein_coding protein_coding MGP_C57BL6NJ_T0095306.1 MGP_C57BL6NJ_G0035828.1 mouse_genomes_project 9 114513839 114515998 - Fbxw19 protein_coding retained_intron MGP_C57BL6NJ_T0095307.1 MGP_C57BL6NJ_G0035828.1 mouse_genomes_project 9 114515755 114531184 - MGP_C57BL6NJ_P0095307 Fbxw19 protein_coding protein_coding MGP_C57BL6NJ_T0016607.1 MGP_C57BL6NJ_G0014652.1 mouse_genomes_project 9 103468521 103469041 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101986.1 MGP_C57BL6NJ_G0040032.1 mouse_genomes_project 9 12700158 12700291 + snoRNA snoRNA MGP_C57BL6NJ_T0016594.1 MGP_C57BL6NJ_G0014639.1 mouse_genomes_project 9 99517046 99517488 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091812.1 MGP_C57BL6NJ_G0034878.1 mouse_genomes_project 9 16645501 16646440 + MGP_C57BL6NJ_P0091812 Olfr832 protein_coding protein_coding MGP_C57BL6NJ_T0093131.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59081569 59114463 - MGP_C57BL6NJ_P0093131 Pml protein_coding protein_coding MGP_C57BL6NJ_T0093132.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59081569 59114559 - MGP_C57BL6NJ_P0093132 Pml protein_coding protein_coding MGP_C57BL6NJ_T0093133.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59082035 59096737 - Pml protein_coding retained_intron MGP_C57BL6NJ_T0093134.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59083244 59114433 - MGP_C57BL6NJ_P0093134 Pml protein_coding protein_coding MGP_C57BL6NJ_T0093135.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59083756 59093479 - Pml protein_coding processed_transcript MGP_C57BL6NJ_T0093136.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59084548 59114559 - MGP_C57BL6NJ_P0093136 Pml protein_coding protein_coding MGP_C57BL6NJ_T0093137.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59093199 59114559 - MGP_C57BL6NJ_P0093137 Pml protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093138.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59093742 59096747 - Pml protein_coding retained_intron MGP_C57BL6NJ_T0093139.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59111853 59114396 - MGP_C57BL6NJ_P0093139 Pml protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093140.1 MGP_C57BL6NJ_G0035379.1 mouse_genomes_project 9 59111898 59114559 - MGP_C57BL6NJ_P0093140 Pml protein_coding protein_coding MGP_C57BL6NJ_T0093341.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65808215 66143376 + MGP_C57BL6NJ_P0093341 Megf11 protein_coding protein_coding MGP_C57BL6NJ_T0093342.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65808215 66151606 + MGP_C57BL6NJ_P0093342 Megf11 protein_coding protein_coding MGP_C57BL6NJ_T0093343.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65808215 66149691 + MGP_C57BL6NJ_P0093343 Megf11 protein_coding protein_coding MGP_C57BL6NJ_T0093344.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65808272 66086028 + Megf11 protein_coding retained_intron MGP_C57BL6NJ_T0093345.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65912386 66150209 + MGP_C57BL6NJ_P0093345 Megf11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093346.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65919918 65927684 + Megf11 protein_coding processed_transcript MGP_C57BL6NJ_T0093347.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65920183 66130154 + Megf11 protein_coding retained_intron MGP_C57BL6NJ_T0093348.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 65966625 66074245 + Megf11 protein_coding processed_transcript MGP_C57BL6NJ_T0093349.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 66098583 66134806 + MGP_C57BL6NJ_P0093349 Megf11 protein_coding protein_coding MGP_C57BL6NJ_T0093350.1 MGP_C57BL6NJ_G0035434.1 mouse_genomes_project 9 66136181 66148334 + Megf11 protein_coding processed_transcript MGP_C57BL6NJ_T0095623.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120671468 120955196 + MGP_C57BL6NJ_P0095623 Osbpl10 protein_coding protein_coding MGP_C57BL6NJ_T0095624.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120696506 120881731 + MGP_C57BL6NJ_P0095624 Osbpl10 protein_coding protein_coding MGP_C57BL6NJ_T0095625.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120715591 120954122 + MGP_C57BL6NJ_P0095625 Osbpl10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095626.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120763586 120778458 + MGP_C57BL6NJ_P0095626 Osbpl10 protein_coding protein_coding MGP_C57BL6NJ_T0095627.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120778424 120954126 + MGP_C57BL6NJ_P0095627 Osbpl10 protein_coding protein_coding MGP_C57BL6NJ_T0095628.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120793980 120937960 + Osbpl10 protein_coding processed_transcript MGP_C57BL6NJ_T0095629.1 MGP_C57BL6NJ_G0035896.1 mouse_genomes_project 9 120831763 120936354 + Osbpl10 protein_coding processed_transcript MGP_C57BL6NJ_T0093820.1 MGP_C57BL6NJ_G0035545.1 mouse_genomes_project 9 80296094 80338859 + MGP_C57BL6NJ_P0093820 Gclc protein_coding protein_coding MGP_C57BL6NJ_T0092115.1 MGP_C57BL6NJ_G0035004.1 mouse_genomes_project 9 29576022 29596208 + MGP_C57BL6NJ_P0092115 Adamts8 protein_coding protein_coding MGP_C57BL6NJ_T0092116.1 MGP_C57BL6NJ_G0035004.1 mouse_genomes_project 9 29576918 29597190 + MGP_C57BL6NJ_P0092116 Adamts8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095706.1 MGP_C57BL6NJ_G0035917.1 mouse_genomes_project 9 125438872 125441949 + MGP_C57BL6NJ_P0095706 protein_coding protein_coding MGP_C57BL6NJ_T0095708.1 MGP_C57BL6NJ_G0035917.1 mouse_genomes_project 9 125440243 125447861 + MGP_C57BL6NJ_P0095708 protein_coding protein_coding MGP_C57BL6NJ_T0095709.1 MGP_C57BL6NJ_G0035917.1 mouse_genomes_project 9 125440610 125452513 + protein_coding retained_intron MGP_C57BL6NJ_T0011333.1 MGP_C57BL6NJ_G0009418.1 mouse_genomes_project 9 63440763 63440868 - Gm25603 miRNA miRNA MGP_C57BL6NJ_T0016638.1 MGP_C57BL6NJ_G0014683.1 mouse_genomes_project 9 126591180 126591607 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093688.1 MGP_C57BL6NJ_G0035512.1 mouse_genomes_project 9 75085123 75099585 + MGP_C57BL6NJ_P0093688 Dyx1c1 protein_coding protein_coding MGP_C57BL6NJ_T0093689.1 MGP_C57BL6NJ_G0035512.1 mouse_genomes_project 9 75085123 75099588 + MGP_C57BL6NJ_P0093689 Dyx1c1 protein_coding protein_coding MGP_C57BL6NJ_T0094170.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99330018 99396086 - MGP_C57BL6NJ_P0094170 U2surp protein_coding protein_coding MGP_C57BL6NJ_T0094171.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99334098 99396188 - MGP_C57BL6NJ_P0094171 U2surp protein_coding protein_coding MGP_C57BL6NJ_T0094172.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99334474 99396187 - MGP_C57BL6NJ_P0094172 U2surp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094173.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99334525 99396053 - MGP_C57BL6NJ_P0094173 U2surp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094174.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99355111 99359328 - U2surp protein_coding retained_intron MGP_C57BL6NJ_T0094175.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99370369 99396051 - MGP_C57BL6NJ_P0094175 U2surp protein_coding protein_coding MGP_C57BL6NJ_T0094176.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99376052 99396048 - MGP_C57BL6NJ_P0094176 U2surp protein_coding protein_coding MGP_C57BL6NJ_T0094177.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99386190 99396077 - U2surp protein_coding retained_intron MGP_C57BL6NJ_T0094178.1 MGP_C57BL6NJ_G0035628.1 mouse_genomes_project 9 99393225 99396071 - U2surp protein_coding retained_intron MGP_C57BL6NJ_T0091610.1 MGP_C57BL6NJ_G0034807.1 mouse_genomes_project 9 2257525 2283865 + MGP_C57BL6NJ_P0091610 Casp12 protein_coding protein_coding MGP_C57BL6NJ_T0091611.1 MGP_C57BL6NJ_G0034807.1 mouse_genomes_project 9 2257571 2283714 + MGP_C57BL6NJ_P0091611 Casp12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091612.1 MGP_C57BL6NJ_G0034807.1 mouse_genomes_project 9 2257574 2266146 + Casp12 protein_coding retained_intron MGP_C57BL6NJ_T0091613.1 MGP_C57BL6NJ_G0034807.1 mouse_genomes_project 9 2257591 2267149 + Casp12 protein_coding retained_intron MGP_C57BL6NJ_T0091614.1 MGP_C57BL6NJ_G0034807.1 mouse_genomes_project 9 2257599 2271572 + MGP_C57BL6NJ_P0091614 Casp12 protein_coding protein_coding MGP_C57BL6NJ_T0094230.1 MGP_C57BL6NJ_G0035637.1 mouse_genomes_project 9 100312790 100346176 - MGP_C57BL6NJ_P0094230 Atp1b3 protein_coding protein_coding MGP_C57BL6NJ_T0094231.1 MGP_C57BL6NJ_G0035637.1 mouse_genomes_project 9 100318803 100323717 - Atp1b3 protein_coding retained_intron MGP_C57BL6NJ_T0094232.1 MGP_C57BL6NJ_G0035637.1 mouse_genomes_project 9 100325940 100331211 - Atp1b3 protein_coding processed_transcript MGP_C57BL6NJ_T0093860.1 MGP_C57BL6NJ_G0035559.1 mouse_genomes_project 9 81066955 81080797 - MGP_C57BL6NJ_P0093860 Mb21d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093861.1 MGP_C57BL6NJ_G0035559.1 mouse_genomes_project 9 81068091 81080990 - MGP_C57BL6NJ_P0093861 Mb21d1 protein_coding protein_coding MGP_C57BL6NJ_T0100755.1 MGP_C57BL6NJ_G0038801.1 mouse_genomes_project 9 124456972 124457053 - Gm22479 snRNA snRNA MGP_C57BL6NJ_T0101979.1 MGP_C57BL6NJ_G0040025.1 mouse_genomes_project 9 12695802 12695925 + Gm25500 snoRNA snoRNA MGP_C57BL6NJ_T0093734.1 MGP_C57BL6NJ_G0035524.1 mouse_genomes_project 9 77222049 77312330 + MGP_C57BL6NJ_P0093734 Fam214a protein_coding protein_coding MGP_C57BL6NJ_T0093735.1 MGP_C57BL6NJ_G0035524.1 mouse_genomes_project 9 77247558 77312330 + MGP_C57BL6NJ_P0093735 Fam214a protein_coding protein_coding MGP_C57BL6NJ_T0093177.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60558528 60587661 + MGP_C57BL6NJ_P0093177 Celf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093178.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60558803 60587661 + MGP_C57BL6NJ_P0093178 Celf6 protein_coding protein_coding MGP_C57BL6NJ_T0093179.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60558803 60587661 + MGP_C57BL6NJ_P0093179 Celf6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093180.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60558989 60587666 + MGP_C57BL6NJ_P0093180 Celf6 protein_coding protein_coding MGP_C57BL6NJ_T0093181.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60583054 60583808 + Celf6 protein_coding retained_intron MGP_C57BL6NJ_T0093182.1 MGP_C57BL6NJ_G0035394.1 mouse_genomes_project 9 60584429 60586498 + Celf6 protein_coding retained_intron MGP_C57BL6NJ_T0002534.1 MGP_C57BL6NJ_G0002422.1 mouse_genomes_project 9 84911013 84911617 + TEC TEC MGP_C57BL6NJ_T0091597.1 MGP_C57BL6NJ_G0034802.1 mouse_genomes_project 9 1147025 1170012 + MGP_C57BL6NJ_P0091597 Kbtbd3 protein_coding protein_coding MGP_C57BL6NJ_T0016557.1 MGP_C57BL6NJ_G0014602.1 mouse_genomes_project 9 86459147 86459535 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094959.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112882645 112889833 + MGP_C57BL6NJ_P0094959 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0094960.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885838 112888211 + MGP_C57BL6NJ_P0094960 Cdhr4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094961.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885874 112886723 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094962.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885880 112889821 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094963.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885904 112886507 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094964.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885911 112889824 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094965.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112885931 112887079 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094966.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112886054 112887811 + Cdhr4 protein_coding processed_transcript MGP_C57BL6NJ_T0094967.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112886092 112889833 + MGP_C57BL6NJ_P0094967 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0094968.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112886146 112887306 + Cdhr4 protein_coding retained_intron MGP_C57BL6NJ_T0094970.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112886764 112889828 + MGP_C57BL6NJ_P0094970 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0094971.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112887520 112889829 + MGP_C57BL6NJ_P0094971 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0094972.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112887741 112889826 + MGP_C57BL6NJ_P0094972 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0094973.1 MGP_C57BL6NJ_G0035772.1 mouse_genomes_project 9 112887826 112889828 + MGP_C57BL6NJ_P0094973 Cdhr4 protein_coding protein_coding MGP_C57BL6NJ_T0016585.1 MGP_C57BL6NJ_G0014630.1 mouse_genomes_project 9 96223417 96223565 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100717.1 MGP_C57BL6NJ_G0038763.1 mouse_genomes_project 9 67477604 67477712 + Gm23248 snRNA snRNA MGP_C57BL6NJ_T0011312.1 MGP_C57BL6NJ_G0009397.1 mouse_genomes_project 9 26744339 26744436 + Gm44316 miRNA miRNA MGP_C57BL6NJ_T0093143.1 MGP_C57BL6NJ_G0035382.1 mouse_genomes_project 9 59262870 59273299 - MGP_C57BL6NJ_P0093143 Tbc1d21 protein_coding protein_coding MGP_C57BL6NJ_T0002530.1 MGP_C57BL6NJ_G0002418.1 mouse_genomes_project 9 78440634 78445304 + TEC TEC MGP_C57BL6NJ_T0095060.1 MGP_C57BL6NJ_G0035788.1 mouse_genomes_project 9 113346329 113367312 + MGP_C57BL6NJ_P0095060 1700102P08Rik protein_coding protein_coding MGP_C57BL6NJ_T0095061.1 MGP_C57BL6NJ_G0035788.1 mouse_genomes_project 9 113346358 113354279 + MGP_C57BL6NJ_P0095061 1700102P08Rik protein_coding protein_coding MGP_C57BL6NJ_T0100716.1 MGP_C57BL6NJ_G0038762.1 mouse_genomes_project 9 66690733 66690849 - Rnu5g snRNA snRNA MGP_C57BL6NJ_T0091822.1 MGP_C57BL6NJ_G0034888.1 mouse_genomes_project 9 17196172 17197120 - MGP_C57BL6NJ_P0091822 Olfr850 protein_coding protein_coding MGP_C57BL6NJ_T0093675.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74739533 74838220 + MGP_C57BL6NJ_P0093675 Nedd4 protein_coding protein_coding MGP_C57BL6NJ_T0093676.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74739625 74752391 + Nedd4 protein_coding retained_intron MGP_C57BL6NJ_T0093677.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74739669 74806336 + MGP_C57BL6NJ_P0093677 Nedd4 protein_coding protein_coding MGP_C57BL6NJ_T0093678.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74739674 74797812 + MGP_C57BL6NJ_P0093678 Nedd4 protein_coding protein_coding MGP_C57BL6NJ_T0093679.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74739677 74740487 + Nedd4 protein_coding processed_transcript MGP_C57BL6NJ_T0093680.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74747400 74752372 + Nedd4 protein_coding retained_intron MGP_C57BL6NJ_T0093681.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74747411 74805901 + MGP_C57BL6NJ_P0093681 Nedd4 protein_coding protein_coding MGP_C57BL6NJ_T0093682.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74827549 74836526 + MGP_C57BL6NJ_P0093682 Nedd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093683.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74829521 74835521 + Nedd4 protein_coding retained_intron MGP_C57BL6NJ_T0093684.1 MGP_C57BL6NJ_G0035509.1 mouse_genomes_project 9 74834206 74835631 + Nedd4 protein_coding retained_intron MGP_C57BL6NJ_T0094129.1 MGP_C57BL6NJ_G0035617.1 mouse_genomes_project 9 94938355 94946533 - MGP_C57BL6NJ_P0094129 Zic1 protein_coding protein_coding MGP_C57BL6NJ_T0094130.1 MGP_C57BL6NJ_G0035617.1 mouse_genomes_project 9 94940797 94946575 - MGP_C57BL6NJ_P0094130 Zic1 protein_coding protein_coding MGP_C57BL6NJ_T0094131.1 MGP_C57BL6NJ_G0035617.1 mouse_genomes_project 9 94942287 94943766 - Zic1 protein_coding processed_transcript MGP_C57BL6NJ_T0095778.1 MGP_C57BL6NJ_G0035941.1 mouse_genomes_project 9 127697083 127815234 + MGP_C57BL6NJ_P0095778 Trak1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095779.1 MGP_C57BL6NJ_G0035941.1 mouse_genomes_project 9 127701150 127815228 + MGP_C57BL6NJ_P0095779 Trak1 protein_coding protein_coding MGP_C57BL6NJ_T0093025.1 MGP_C57BL6NJ_G0035349.1 mouse_genomes_project 9 57739021 57816934 + MGP_C57BL6NJ_P0093025 Ptpn9 protein_coding protein_coding MGP_C57BL6NJ_T0092257.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35833543 35851747 - MGP_C57BL6NJ_P0092257 Ei24 protein_coding protein_coding MGP_C57BL6NJ_T0092258.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35833543 35851664 - MGP_C57BL6NJ_P0092258 Ei24 protein_coding protein_coding MGP_C57BL6NJ_T0092259.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35834262 35837592 - Ei24 protein_coding retained_intron MGP_C57BL6NJ_T0092260.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35834561 35837110 - Ei24 protein_coding retained_intron MGP_C57BL6NJ_T0092261.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35837173 35840404 - Ei24 protein_coding retained_intron MGP_C57BL6NJ_T0092262.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35839995 35851411 - MGP_C57BL6NJ_P0092262 Ei24 protein_coding protein_coding MGP_C57BL6NJ_T0092263.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35840004 35844661 - MGP_C57BL6NJ_P0092263 Ei24 protein_coding protein_coding MGP_C57BL6NJ_T0092264.1 MGP_C57BL6NJ_G0035048.1 mouse_genomes_project 9 35840913 35851752 - MGP_C57BL6NJ_P0092264 Ei24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093145.1 MGP_C57BL6NJ_G0035384.1 mouse_genomes_project 9 59430973 59449005 - MGP_C57BL6NJ_P0093145 Cd276 protein_coding protein_coding MGP_C57BL6NJ_T0093146.1 MGP_C57BL6NJ_G0035384.1 mouse_genomes_project 9 59430975 59463193 - MGP_C57BL6NJ_P0093146 Cd276 protein_coding protein_coding MGP_C57BL6NJ_T0092730.1 MGP_C57BL6NJ_G0035247.1 mouse_genomes_project 9 46216266 46234113 - MGP_C57BL6NJ_P0092730 4931429L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0092731.1 MGP_C57BL6NJ_G0035247.1 mouse_genomes_project 9 46216909 46225863 - MGP_C57BL6NJ_P0092731 4931429L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0092732.1 MGP_C57BL6NJ_G0035247.1 mouse_genomes_project 9 46224574 46230218 - MGP_C57BL6NJ_P0092732 4931429L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0095781.1 MGP_C57BL6NJ_G0035943.1 mouse_genomes_project 9 127926665 127999361 - MGP_C57BL6NJ_P0095781 Lyzl4 protein_coding protein_coding MGP_C57BL6NJ_T0095782.1 MGP_C57BL6NJ_G0035943.1 mouse_genomes_project 9 127926671 127999891 - MGP_C57BL6NJ_P0095782 Lyzl4 protein_coding protein_coding MGP_C57BL6NJ_T0095783.1 MGP_C57BL6NJ_G0035943.1 mouse_genomes_project 9 127932909 127999321 - MGP_C57BL6NJ_P0095783 Lyzl4 protein_coding protein_coding MGP_C57BL6NJ_T0095933.1 MGP_C57BL6NJ_G0035993.1 mouse_genomes_project 9 131003048 131008246 + MGP_C57BL6NJ_P0095933 Nlrp4g protein_coding protein_coding MGP_C57BL6NJ_T0094437.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107334784 107412299 + MGP_C57BL6NJ_P0094437 Ryk protein_coding protein_coding MGP_C57BL6NJ_T0094438.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107334839 107412710 + MGP_C57BL6NJ_P0094438 Ryk protein_coding protein_coding MGP_C57BL6NJ_T0094439.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107334849 107413062 + MGP_C57BL6NJ_P0094439 Ryk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094440.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107346100 107362520 + Ryk protein_coding processed_transcript MGP_C57BL6NJ_T0094441.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107372182 107386556 + Ryk protein_coding retained_intron MGP_C57BL6NJ_T0094442.1 MGP_C57BL6NJ_G0035684.1 mouse_genomes_project 9 107403351 107404343 + Ryk protein_coding retained_intron MGP_C57BL6NJ_T0093732.1 MGP_C57BL6NJ_G0035523.1 mouse_genomes_project 9 77125954 77157712 + MGP_C57BL6NJ_P0093732 Onecut1 protein_coding protein_coding MGP_C57BL6NJ_T0093733.1 MGP_C57BL6NJ_G0035523.1 mouse_genomes_project 9 77130517 77156291 + Onecut1 protein_coding processed_transcript MGP_C57BL6NJ_T0016597.1 MGP_C57BL6NJ_G0014642.1 mouse_genomes_project 9 100543350 100544044 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092752.1 MGP_C57BL6NJ_G0035255.1 mouse_genomes_project 9 48622461 48623081 + MGP_C57BL6NJ_P0092752 Gm5617 protein_coding protein_coding MGP_C57BL6NJ_T0100743.1 MGP_C57BL6NJ_G0038789.1 mouse_genomes_project 9 106837967 106838070 + Gm22894 snRNA snRNA MGP_C57BL6NJ_T0095894.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130252569 130277299 - Lztfl1 protein_coding processed_transcript MGP_C57BL6NJ_T0095895.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130255165 130277202 - MGP_C57BL6NJ_P0095895 Lztfl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095896.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130258881 130272299 - MGP_C57BL6NJ_P0095896 Lztfl1 protein_coding protein_coding MGP_C57BL6NJ_T0095897.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130258913 130277278 - MGP_C57BL6NJ_P0095897 Lztfl1 protein_coding protein_coding MGP_C57BL6NJ_T0095898.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130264989 130266998 - Lztfl1 protein_coding retained_intron MGP_C57BL6NJ_T0095899.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130266737 130277227 - Lztfl1 protein_coding processed_transcript MGP_C57BL6NJ_T0095900.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130272152 130277221 - Lztfl1 protein_coding processed_transcript MGP_C57BL6NJ_T0095901.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130272156 130277223 - Lztfl1 protein_coding processed_transcript MGP_C57BL6NJ_T0095902.1 MGP_C57BL6NJ_G0035982.1 mouse_genomes_project 9 130274559 130277256 - Lztfl1 protein_coding retained_intron MGP_C57BL6NJ_T0093691.1 MGP_C57BL6NJ_G0035514.1 mouse_genomes_project 9 75106142 75112285 - MGP_C57BL6NJ_P0093691 Ccpg1os protein_coding protein_coding MGP_C57BL6NJ_T0093692.1 MGP_C57BL6NJ_G0035514.1 mouse_genomes_project 9 75110454 75112291 - Ccpg1os protein_coding retained_intron MGP_C57BL6NJ_T0099532.1 MGP_C57BL6NJ_G0037583.1 mouse_genomes_project 9 56940014 56941481 - Gm29322 sense_intronic sense_intronic MGP_C57BL6NJ_T0002541.1 MGP_C57BL6NJ_G0002428.1 mouse_genomes_project 9 89888658 89889817 - TEC TEC MGP_C57BL6NJ_T0102011.1 MGP_C57BL6NJ_G0040057.1 mouse_genomes_project 9 65553452 65553520 + Gm23344 snoRNA snoRNA MGP_C57BL6NJ_T0092032.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20591418 21044031 + MGP_C57BL6NJ_P0092032 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092033.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20591425 21044025 + MGP_C57BL6NJ_P0092033 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092034.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20591434 21044025 + MGP_C57BL6NJ_P0092034 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092035.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20591434 20631970 + MGP_C57BL6NJ_P0092035 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092036.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20591570 20632016 + MGP_C57BL6NJ_P0092036 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092037.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20606499 21044031 + MGP_C57BL6NJ_P0092037 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092038.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20628799 20705651 + Bbs9 protein_coding processed_transcript MGP_C57BL6NJ_T0092039.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20700553 20758937 + Bbs9 protein_coding processed_transcript MGP_C57BL6NJ_T0092040.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20766970 21044031 + MGP_C57BL6NJ_P0092040 Bbs9 protein_coding protein_coding MGP_C57BL6NJ_T0092041.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20774882 21044031 + MGP_C57BL6NJ_P0092041 Bbs9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092042.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20791292 20814156 + Bbs9 protein_coding retained_intron MGP_C57BL6NJ_T0092043.1 MGP_C57BL6NJ_G0034979.1 mouse_genomes_project 9 20812392 21044025 + Bbs9 protein_coding retained_intron MGP_C57BL6NJ_T0092229.1 MGP_C57BL6NJ_G0035038.1 mouse_genomes_project 9 35110114 35116100 - MGP_C57BL6NJ_P0092229 9230110F15Rik protein_coding protein_coding MGP_C57BL6NJ_T0093359.1 MGP_C57BL6NJ_G0035436.1 mouse_genomes_project 9 66263326 66387140 + MGP_C57BL6NJ_P0093359 Dennd4a protein_coding protein_coding MGP_C57BL6NJ_T0095847.1 MGP_C57BL6NJ_G0035963.1 mouse_genomes_project 9 129311669 129318982 - MGP_C57BL6NJ_P0095847 Gm35549 protein_coding protein_coding MGP_C57BL6NJ_T0095848.1 MGP_C57BL6NJ_G0035963.1 mouse_genomes_project 9 129311669 129318982 - MGP_C57BL6NJ_P0095848 Gm35549 protein_coding protein_coding MGP_C57BL6NJ_T0095849.1 MGP_C57BL6NJ_G0035963.1 mouse_genomes_project 9 129311669 129318982 - MGP_C57BL6NJ_P0095849 Gm35549 protein_coding protein_coding MGP_C57BL6NJ_T0092373.1 MGP_C57BL6NJ_G0035113.1 mouse_genomes_project 9 38262865 38263798 - MGP_C57BL6NJ_P0092373 Olfr934 protein_coding protein_coding MGP_C57BL6NJ_T0091687.1 MGP_C57BL6NJ_G0034834.1 mouse_genomes_project 9 10578641 10581511 - MGP_C57BL6NJ_P0091687 Jrkl protein_coding protein_coding MGP_C57BL6NJ_T0092899.1 MGP_C57BL6NJ_G0035304.1 mouse_genomes_project 9 54044070 54083341 + MGP_C57BL6NJ_P0092899 Npat protein_coding protein_coding MGP_C57BL6NJ_T0092900.1 MGP_C57BL6NJ_G0035304.1 mouse_genomes_project 9 54072563 54076240 + Npat protein_coding retained_intron MGP_C57BL6NJ_T0093390.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127233 67135759 + MGP_C57BL6NJ_P0093390 Pif1 protein_coding protein_coding MGP_C57BL6NJ_T0093391.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127255 67127911 + MGP_C57BL6NJ_P0093391 Pif1 protein_coding protein_coding MGP_C57BL6NJ_T0093392.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127266 67135757 + MGP_C57BL6NJ_P0093392 Pif1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093393.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127278 67130566 + Pif1 protein_coding retained_intron MGP_C57BL6NJ_T0093394.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127278 67135762 + MGP_C57BL6NJ_P0093394 Pif1 protein_coding protein_coding MGP_C57BL6NJ_T0093395.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127286 67135762 + Pif1 protein_coding retained_intron MGP_C57BL6NJ_T0093396.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127294 67135762 + MGP_C57BL6NJ_P0093396 Pif1 protein_coding protein_coding MGP_C57BL6NJ_T0093397.1 MGP_C57BL6NJ_G0035455.1 mouse_genomes_project 9 67127299 67128354 + MGP_C57BL6NJ_P0093397 Pif1 protein_coding protein_coding MGP_C57BL6NJ_T0009417.1 MGP_C57BL6NJ_G0007567.1 mouse_genomes_project 9 34939323 34948159 - Gm27187 lincRNA lincRNA MGP_C57BL6NJ_T0009418.1 MGP_C57BL6NJ_G0007567.1 mouse_genomes_project 9 34939370 34948273 - Gm27187 lincRNA lincRNA MGP_C57BL6NJ_T0095607.1 MGP_C57BL6NJ_G0035883.1 mouse_genomes_project 9 119924676 119925120 + MGP_C57BL6NJ_P0095607 protein_coding protein_coding MGP_C57BL6NJ_T0009479.1 MGP_C57BL6NJ_G0007616.1 mouse_genomes_project 9 87846955 87861915 + 4930554C24Rik lincRNA lincRNA MGP_C57BL6NJ_T0099184.1 MGP_C57BL6NJ_G0037248.1 mouse_genomes_project 9 106584528 106584646 + n-R5s88 rRNA rRNA MGP_C57BL6NJ_T0002515.1 MGP_C57BL6NJ_G0002403.1 mouse_genomes_project 9 74441510 74444264 + TEC TEC MGP_C57BL6NJ_T0092570.1 MGP_C57BL6NJ_G0035201.1 mouse_genomes_project 9 44167076 44169768 + MGP_C57BL6NJ_P0092570 Rps25 protein_coding protein_coding MGP_C57BL6NJ_T0094015.1 MGP_C57BL6NJ_G0035591.1 mouse_genomes_project 9 89768087 89904185 - MGP_C57BL6NJ_P0094015 Me1 protein_coding protein_coding MGP_C57BL6NJ_T0094016.1 MGP_C57BL6NJ_G0035591.1 mouse_genomes_project 9 89768122 89891886 - MGP_C57BL6NJ_P0094016 Me1 protein_coding protein_coding MGP_C57BL6NJ_T0094017.1 MGP_C57BL6NJ_G0035591.1 mouse_genomes_project 9 89770556 89813437 - Me1 protein_coding processed_transcript MGP_C57BL6NJ_T0094018.1 MGP_C57BL6NJ_G0035591.1 mouse_genomes_project 9 89808273 89813470 - Me1 protein_coding processed_transcript MGP_C57BL6NJ_T0002609.1 MGP_C57BL6NJ_G0002496.1 mouse_genomes_project 9 115211543 115213152 + TEC TEC MGP_C57BL6NJ_T0094314.1 MGP_C57BL6NJ_G0035660.1 mouse_genomes_project 9 103480822 103488660 - MGP_C57BL6NJ_P0094314 Faiml protein_coding protein_coding MGP_C57BL6NJ_T0094315.1 MGP_C57BL6NJ_G0035660.1 mouse_genomes_project 9 103480914 103487812 - MGP_C57BL6NJ_P0094315 Faiml protein_coding protein_coding MGP_C57BL6NJ_T0095882.1 MGP_C57BL6NJ_G0035977.1 mouse_genomes_project 9 130025351 130073365 + MGP_C57BL6NJ_P0095882 Limd1 protein_coding protein_coding MGP_C57BL6NJ_T0002497.1 MGP_C57BL6NJ_G0002385.1 mouse_genomes_project 9 33418408 33419318 + TEC TEC MGP_C57BL6NJ_T0092690.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45820606 45837847 - MGP_C57BL6NJ_P0092690 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092691.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45820624 45837577 - MGP_C57BL6NJ_P0092691 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092692.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45822054 45824046 - MGP_C57BL6NJ_P0092692 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092693.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45824983 45827239 - Sidt2 protein_coding retained_intron MGP_C57BL6NJ_T0092694.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45825411 45827641 - Sidt2 protein_coding retained_intron MGP_C57BL6NJ_T0092695.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45826233 45829395 - MGP_C57BL6NJ_P0092695 Sidt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092696.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45826981 45830399 - Sidt2 protein_coding retained_intron MGP_C57BL6NJ_T0092697.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45827810 45830863 - MGP_C57BL6NJ_P0092697 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092698.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45827898 45837781 - MGP_C57BL6NJ_P0092698 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092699.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45827960 45834431 - MGP_C57BL6NJ_P0092699 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092700.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45828276 45834372 - MGP_C57BL6NJ_P0092700 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092701.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45828313 45834604 - MGP_C57BL6NJ_P0092701 Sidt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092702.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45828348 45830915 - MGP_C57BL6NJ_P0092702 Sidt2 protein_coding protein_coding MGP_C57BL6NJ_T0092703.1 MGP_C57BL6NJ_G0035238.1 mouse_genomes_project 9 45835040 45837834 - Sidt2 protein_coding retained_intron MGP_C57BL6NJ_T0093313.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65508372 65551509 - MGP_C57BL6NJ_P0093313 Zwilch protein_coding protein_coding MGP_C57BL6NJ_T0093314.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65508897 65551263 - MGP_C57BL6NJ_P0093314 Zwilch protein_coding protein_coding MGP_C57BL6NJ_T0093315.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65508940 65518961 - Zwilch protein_coding retained_intron MGP_C57BL6NJ_T0093316.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65511132 65551299 - MGP_C57BL6NJ_P0093316 Zwilch protein_coding protein_coding MGP_C57BL6NJ_T0093317.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65511209 65524726 - MGP_C57BL6NJ_P0093317 Zwilch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093318.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65511211 65522103 - MGP_C57BL6NJ_P0093318 Zwilch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093319.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65518933 65530007 - Zwilch protein_coding retained_intron MGP_C57BL6NJ_T0093320.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65522119 65530255 - Zwilch protein_coding retained_intron MGP_C57BL6NJ_T0093321.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65529692 65551318 - MGP_C57BL6NJ_P0093321 Zwilch protein_coding protein_coding MGP_C57BL6NJ_T0093322.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65535389 65551311 - MGP_C57BL6NJ_P0093322 Zwilch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093323.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65535808 65551293 - MGP_C57BL6NJ_P0093323 Zwilch protein_coding protein_coding MGP_C57BL6NJ_T0093324.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65537096 65551295 - MGP_C57BL6NJ_P0093324 Zwilch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093325.1 MGP_C57BL6NJ_G0035427.1 mouse_genomes_project 9 65542527 65551308 - Zwilch protein_coding retained_intron MGP_C57BL6NJ_T0091796.1 MGP_C57BL6NJ_G0034867.1 mouse_genomes_project 9 16014218 16021307 + MGP_C57BL6NJ_P0091796 Ubtfl1 protein_coding protein_coding MGP_C57BL6NJ_T0091797.1 MGP_C57BL6NJ_G0034867.1 mouse_genomes_project 9 16014220 16021130 + MGP_C57BL6NJ_P0091797 Ubtfl1 protein_coding protein_coding MGP_C57BL6NJ_T0091798.1 MGP_C57BL6NJ_G0034867.1 mouse_genomes_project 9 16018898 16020547 + MGP_C57BL6NJ_P0091798 Ubtfl1 protein_coding protein_coding MGP_C57BL6NJ_T0095843.1 MGP_C57BL6NJ_G0035961.1 mouse_genomes_project 9 129206880 129261538 + MGP_C57BL6NJ_P0095843 Topaz1 protein_coding protein_coding MGP_C57BL6NJ_T0093382.1 MGP_C57BL6NJ_G0035451.1 mouse_genomes_project 9 66951227 66970564 + MGP_C57BL6NJ_P0093382 Mtfmt protein_coding protein_coding MGP_C57BL6NJ_T0093383.1 MGP_C57BL6NJ_G0035451.1 mouse_genomes_project 9 66951233 66969927 + Mtfmt protein_coding retained_intron MGP_C57BL6NJ_T0093384.1 MGP_C57BL6NJ_G0035451.1 mouse_genomes_project 9 66952470 66964787 + Mtfmt protein_coding processed_transcript MGP_C57BL6NJ_T0093385.1 MGP_C57BL6NJ_G0035451.1 mouse_genomes_project 9 66961050 66969635 + Mtfmt protein_coding retained_intron MGP_C57BL6NJ_T0002575.1 MGP_C57BL6NJ_G0002462.1 mouse_genomes_project 9 105530251 105535742 + TEC TEC MGP_C57BL6NJ_T0005614.1 MGP_C57BL6NJ_G0004747.1 mouse_genomes_project 9 57858221 57890128 - Man2c1os antisense antisense MGP_C57BL6NJ_T0005615.1 MGP_C57BL6NJ_G0004747.1 mouse_genomes_project 9 57885896 57889736 - Man2c1os antisense antisense MGP_C57BL6NJ_T0005616.1 MGP_C57BL6NJ_G0004747.1 mouse_genomes_project 9 57888820 57890082 - Man2c1os antisense antisense MGP_C57BL6NJ_T0091835.1 MGP_C57BL6NJ_G0034901.1 mouse_genomes_project 9 17952013 17955084 + MGP_C57BL6NJ_P0091835 Olfr868 protein_coding protein_coding MGP_C57BL6NJ_T0094932.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112837959 112859354 + Traip protein_coding retained_intron MGP_C57BL6NJ_T0094933.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112838779 112860099 + MGP_C57BL6NJ_P0094933 Traip protein_coding protein_coding MGP_C57BL6NJ_T0094934.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112838790 112846319 + Traip protein_coding processed_transcript MGP_C57BL6NJ_T0094935.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112838811 112848877 + MGP_C57BL6NJ_P0094935 Traip protein_coding protein_coding MGP_C57BL6NJ_T0094936.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112848222 112849493 + Traip protein_coding processed_transcript MGP_C57BL6NJ_T0094937.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112850003 112856475 + Traip protein_coding retained_intron MGP_C57BL6NJ_T0094938.1 MGP_C57BL6NJ_G0035768.1 mouse_genomes_project 9 112850064 112856572 + Traip protein_coding retained_intron MGP_C57BL6NJ_T0005644.1 MGP_C57BL6NJ_G0004768.1 mouse_genomes_project 9 83022755 83024900 - Gm27227 antisense antisense MGP_C57BL6NJ_T0101993.1 MGP_C57BL6NJ_G0040039.1 mouse_genomes_project 9 23225773 23225907 + Gm23893 snoRNA snoRNA MGP_C57BL6NJ_T0100752.1 MGP_C57BL6NJ_G0038798.1 mouse_genomes_project 9 116410848 116410911 + Gm26409 snRNA snRNA MGP_C57BL6NJ_T0092886.1 MGP_C57BL6NJ_G0035298.1 mouse_genomes_project 9 53106052 53112437 - MGP_C57BL6NJ_P0092886 AI593442 protein_coding protein_coding MGP_C57BL6NJ_T0011373.1 MGP_C57BL6NJ_G0009458.1 mouse_genomes_project 9 129137599 129137698 + Mir138-1 miRNA miRNA MGP_C57BL6NJ_T0093948.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86359475 86397681 - MGP_C57BL6NJ_P0093948 Lca5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093949.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86360546 86415677 - MGP_C57BL6NJ_P0093949 Lca5 protein_coding protein_coding MGP_C57BL6NJ_T0093950.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86362601 86415577 - MGP_C57BL6NJ_P0093950 Lca5 protein_coding protein_coding MGP_C57BL6NJ_T0093951.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86371702 86372937 - Lca5 protein_coding retained_intron MGP_C57BL6NJ_T0093952.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86392966 86415643 - Lca5 protein_coding retained_intron MGP_C57BL6NJ_T0093953.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86393942 86407988 - MGP_C57BL6NJ_P0093953 Lca5 protein_coding protein_coding MGP_C57BL6NJ_T0093954.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86394147 86397689 - Lca5 protein_coding retained_intron MGP_C57BL6NJ_T0093955.1 MGP_C57BL6NJ_G0035578.1 mouse_genomes_project 9 86397468 86415666 - MGP_C57BL6NJ_P0093955 Lca5 protein_coding protein_coding MGP_C57BL6NJ_T0016580.1 MGP_C57BL6NJ_G0014625.1 mouse_genomes_project 9 94266905 94267197 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095694.1 MGP_C57BL6NJ_G0035912.1 mouse_genomes_project 9 125229955 125232438 + MGP_C57BL6NJ_P0095694 protein_coding protein_coding MGP_C57BL6NJ_T0091722.1 MGP_C57BL6NJ_G0034844.1 mouse_genomes_project 9 11821923 11831927 + MGP_C57BL6NJ_P0091722 Cwc15 protein_coding protein_coding MGP_C57BL6NJ_T0093059.1 MGP_C57BL6NJ_G0035353.1 mouse_genomes_project 9 57913560 57916819 - MGP_C57BL6NJ_P0093059 Commd4 protein_coding protein_coding MGP_C57BL6NJ_T0100699.1 MGP_C57BL6NJ_G0038745.1 mouse_genomes_project 9 36992050 36992249 - Gm24764 snRNA snRNA MGP_C57BL6NJ_T0093841.1 MGP_C57BL6NJ_G0035551.1 mouse_genomes_project 9 80810358 80837318 + MGP_C57BL6NJ_P0093841 protein_coding protein_coding MGP_C57BL6NJ_T0093842.1 MGP_C57BL6NJ_G0035551.1 mouse_genomes_project 9 80819507 80837229 + protein_coding retained_intron MGP_C57BL6NJ_T0094496.1 MGP_C57BL6NJ_G0035696.1 mouse_genomes_project 9 108608221 108651082 + MGP_C57BL6NJ_P0094496 Gm28305 protein_coding protein_coding MGP_C57BL6NJ_T0095880.1 MGP_C57BL6NJ_G0035975.1 mouse_genomes_project 9 129783215 129784947 - MGP_C57BL6NJ_P0095880 Tmem158 protein_coding protein_coding MGP_C57BL6NJ_T0092095.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26217573 26218317 + Opcml protein_coding processed_transcript MGP_C57BL6NJ_T0092096.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26217745 27448814 + MGP_C57BL6NJ_P0092096 Opcml protein_coding protein_coding MGP_C57BL6NJ_T0092097.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26218100 26466035 + Opcml protein_coding processed_transcript MGP_C57BL6NJ_T0092098.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26860094 26862897 + Opcml protein_coding processed_transcript MGP_C57BL6NJ_T0092099.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26860742 27442999 + MGP_C57BL6NJ_P0092099 Opcml protein_coding protein_coding MGP_C57BL6NJ_T0092100.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26861028 27325006 + Opcml protein_coding retained_intron MGP_C57BL6NJ_T0092101.1 MGP_C57BL6NJ_G0035000.1 mouse_genomes_project 9 26861114 27150303 + Opcml protein_coding processed_transcript MGP_C57BL6NJ_T0093486.1 MGP_C57BL6NJ_G0035476.1 mouse_genomes_project 9 68661837 68681911 - MGP_C57BL6NJ_P0093486 Lactb protein_coding protein_coding MGP_C57BL6NJ_T0092060.1 MGP_C57BL6NJ_G0034987.1 mouse_genomes_project 9 23531053 23597224 + MGP_C57BL6NJ_P0092060 Sept7 protein_coding protein_coding MGP_C57BL6NJ_T0092061.1 MGP_C57BL6NJ_G0034987.1 mouse_genomes_project 9 23531053 23597224 + MGP_C57BL6NJ_P0092061 Sept7 protein_coding protein_coding MGP_C57BL6NJ_T0092649.1 MGP_C57BL6NJ_G0035225.1 mouse_genomes_project 9 44961163 44979063 + MGP_C57BL6NJ_P0092649 Scn4b protein_coding protein_coding MGP_C57BL6NJ_T0095439.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115854208 115883580 - MGP_C57BL6NJ_P0095439 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0095440.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115854208 115883580 - MGP_C57BL6NJ_P0095440 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0095441.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115854291 115883561 - MGP_C57BL6NJ_P0095441 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0095442.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115854462 115861471 - MGP_C57BL6NJ_P0095442 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0095443.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115854462 115868037 - MGP_C57BL6NJ_P0095443 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0095444.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115857655 115858298 - Nbeal2 protein_coding retained_intron MGP_C57BL6NJ_T0095445.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115858327 115859088 - Nbeal2 protein_coding retained_intron MGP_C57BL6NJ_T0095446.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115858989 115863869 - MGP_C57BL6NJ_P0095446 Nbeal2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095447.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115860485 115861300 - Nbeal2 protein_coding retained_intron MGP_C57BL6NJ_T0095448.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115864039 115864507 - Nbeal2 protein_coding retained_intron MGP_C57BL6NJ_T0095449.1 MGP_C57BL6NJ_G0035850.1 mouse_genomes_project 9 115867737 115874788 - MGP_C57BL6NJ_P0095449 Nbeal2 protein_coding protein_coding MGP_C57BL6NJ_T0092650.1 MGP_C57BL6NJ_G0035226.1 mouse_genomes_project 9 44995471 45028721 - MGP_C57BL6NJ_P0092650 Tmprss4 protein_coding protein_coding MGP_C57BL6NJ_T0092651.1 MGP_C57BL6NJ_G0035226.1 mouse_genomes_project 9 44995472 45028719 - MGP_C57BL6NJ_P0092651 Tmprss4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092652.1 MGP_C57BL6NJ_G0035226.1 mouse_genomes_project 9 44996050 45028689 - Tmprss4 protein_coding processed_transcript MGP_C57BL6NJ_T0092653.1 MGP_C57BL6NJ_G0035226.1 mouse_genomes_project 9 44996050 45028605 - MGP_C57BL6NJ_P0092653 Tmprss4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092654.1 MGP_C57BL6NJ_G0035226.1 mouse_genomes_project 9 44997542 45003399 - Tmprss4 protein_coding retained_intron MGP_C57BL6NJ_T0093096.1 MGP_C57BL6NJ_G0035374.1 mouse_genomes_project 9 58846509 58863226 + MGP_C57BL6NJ_P0093096 Cyp11a1 protein_coding protein_coding MGP_C57BL6NJ_T0093097.1 MGP_C57BL6NJ_G0035374.1 mouse_genomes_project 9 58854685 58872122 + MGP_C57BL6NJ_P0093097 Cyp11a1 protein_coding protein_coding MGP_C57BL6NJ_T0093098.1 MGP_C57BL6NJ_G0035374.1 mouse_genomes_project 9 58855011 58864870 + Cyp11a1 protein_coding retained_intron MGP_C57BL6NJ_T0093099.1 MGP_C57BL6NJ_G0035374.1 mouse_genomes_project 9 58859879 58870342 + MGP_C57BL6NJ_P0093099 Cyp11a1 protein_coding protein_coding MGP_C57BL6NJ_T0095311.1 MGP_C57BL6NJ_G0035830.1 mouse_genomes_project 9 114660753 114926750 - MGP_C57BL6NJ_P0095311 Fbxw24 protein_coding protein_coding MGP_C57BL6NJ_T0099535.1 MGP_C57BL6NJ_G0037586.1 mouse_genomes_project 9 106607854 106610330 - Gm29388 sense_intronic sense_intronic MGP_C57BL6NJ_T0092645.1 MGP_C57BL6NJ_G0035222.1 mouse_genomes_project 9 44899386 44928393 + MGP_C57BL6NJ_P0092645 Amica1 protein_coding protein_coding MGP_C57BL6NJ_T0092753.1 MGP_C57BL6NJ_G0035256.1 mouse_genomes_project 9 48730369 48735868 - Nnmt protein_coding processed_transcript MGP_C57BL6NJ_T0092754.1 MGP_C57BL6NJ_G0035256.1 mouse_genomes_project 9 48730369 48743621 - MGP_C57BL6NJ_P0092754 Nnmt protein_coding protein_coding MGP_C57BL6NJ_T0092755.1 MGP_C57BL6NJ_G0035256.1 mouse_genomes_project 9 48730369 48743621 - MGP_C57BL6NJ_P0092755 Nnmt protein_coding protein_coding MGP_C57BL6NJ_T0092756.1 MGP_C57BL6NJ_G0035256.1 mouse_genomes_project 9 48730383 48735942 - Nnmt protein_coding processed_transcript MGP_C57BL6NJ_T0092757.1 MGP_C57BL6NJ_G0035256.1 mouse_genomes_project 9 48741729 48743545 - Nnmt protein_coding retained_intron MGP_C57BL6NJ_T0094608.1 MGP_C57BL6NJ_G0035715.1 mouse_genomes_project 9 110937953 110943021 - MGP_C57BL6NJ_P0094608 Ppm1m protein_coding protein_coding MGP_C57BL6NJ_T0094609.1 MGP_C57BL6NJ_G0035715.1 mouse_genomes_project 9 110937953 110942724 - MGP_C57BL6NJ_P0094609 Ppm1m protein_coding protein_coding MGP_C57BL6NJ_T0094610.1 MGP_C57BL6NJ_G0035715.1 mouse_genomes_project 9 110938728 110940670 - MGP_C57BL6NJ_P0094610 Ppm1m protein_coding protein_coding MGP_C57BL6NJ_T0094611.1 MGP_C57BL6NJ_G0035715.1 mouse_genomes_project 9 110941316 110942120 - Ppm1m protein_coding retained_intron MGP_C57BL6NJ_T0094612.1 MGP_C57BL6NJ_G0035715.1 mouse_genomes_project 9 110941726 110943492 - Ppm1m protein_coding processed_transcript MGP_C57BL6NJ_T0016581.1 MGP_C57BL6NJ_G0014626.1 mouse_genomes_project 9 94283564 94283727 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095699.1 MGP_C57BL6NJ_G0035914.1 mouse_genomes_project 9 125274380 125294250 - MGP_C57BL6NJ_P0095699 Slc22a13 protein_coding protein_coding MGP_C57BL6NJ_T0092218.1 MGP_C57BL6NJ_G0035030.1 mouse_genomes_project 9 34541836 34546679 - MGP_C57BL6NJ_P0092218 Pate4 protein_coding protein_coding MGP_C57BL6NJ_T0091906.1 MGP_C57BL6NJ_G0034924.1 mouse_genomes_project 9 18903202 18917320 + MGP_C57BL6NJ_P0091906 Mrpl4 protein_coding protein_coding MGP_C57BL6NJ_T0091907.1 MGP_C57BL6NJ_G0034924.1 mouse_genomes_project 9 18903382 18918739 + MGP_C57BL6NJ_P0091907 Mrpl4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0009533.1 MGP_C57BL6NJ_G0007656.1 mouse_genomes_project 9 116895315 116900242 - Gm42523 lincRNA lincRNA MGP_C57BL6NJ_T0092307.1 MGP_C57BL6NJ_G0035059.1 mouse_genomes_project 9 36673931 36678874 + MGP_C57BL6NJ_P0092307 Vsig2 protein_coding protein_coding MGP_C57BL6NJ_T0092059.1 MGP_C57BL6NJ_G0034986.1 mouse_genomes_project 9 23385020 23431799 - MGP_C57BL6NJ_P0092059 Herpud2 protein_coding protein_coding MGP_C57BL6NJ_T0091677.1 MGP_C57BL6NJ_G0034831.1 mouse_genomes_project 9 6056540 6060523 + MGP_C57BL6NJ_P0091677 Gm16485 protein_coding protein_coding MGP_C57BL6NJ_T0005712.1 MGP_C57BL6NJ_G0004816.1 mouse_genomes_project 9 120459376 120461887 + Gm9888 antisense antisense MGP_C57BL6NJ_T0093439.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67678625 67715743 - MGP_C57BL6NJ_P0093439 Snx1 protein_coding protein_coding MGP_C57BL6NJ_T0093440.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67679616 67681840 - Snx1 protein_coding retained_intron MGP_C57BL6NJ_T0093441.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67684679 67687074 - Snx1 protein_coding retained_intron MGP_C57BL6NJ_T0093442.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67687041 67692181 - Snx1 protein_coding retained_intron MGP_C57BL6NJ_T0093443.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67687888 67717444 - MGP_C57BL6NJ_P0093443 Snx1 protein_coding protein_coding MGP_C57BL6NJ_T0093444.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67694957 67696207 - Snx1 protein_coding retained_intron MGP_C57BL6NJ_T0093445.1 MGP_C57BL6NJ_G0035464.1 mouse_genomes_project 9 67699624 67715654 - Snx1 protein_coding retained_intron MGP_C57BL6NJ_T0095146.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113551934 113554823 + MGP_C57BL6NJ_P0095146 Dalrd3 protein_coding protein_coding MGP_C57BL6NJ_T0095147.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113551958 113553568 + MGP_C57BL6NJ_P0095147 Dalrd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095148.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113551959 113554719 + MGP_C57BL6NJ_P0095148 Dalrd3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095149.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113551962 113552735 + Dalrd3 protein_coding retained_intron MGP_C57BL6NJ_T0095150.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113552744 113554030 + Dalrd3 protein_coding retained_intron MGP_C57BL6NJ_T0095151.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113553055 113553889 + Dalrd3 protein_coding retained_intron MGP_C57BL6NJ_T0095152.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113553285 113554822 + Dalrd3 protein_coding retained_intron MGP_C57BL6NJ_T0095153.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113553566 113554580 + MGP_C57BL6NJ_P0095153 Dalrd3 protein_coding protein_coding MGP_C57BL6NJ_T0095154.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113554315 113554820 + Dalrd3 protein_coding retained_intron MGP_C57BL6NJ_T0095156.1 MGP_C57BL6NJ_G0035799.1 mouse_genomes_project 9 113554440 113554704 + MGP_C57BL6NJ_P0095156 Dalrd3 protein_coding protein_coding MGP_C57BL6NJ_T0091909.1 MGP_C57BL6NJ_G0034926.1 mouse_genomes_project 9 18938864 18940023 + MGP_C57BL6NJ_P0091909 Icam4 protein_coding protein_coding MGP_C57BL6NJ_T0094311.1 MGP_C57BL6NJ_G0035659.1 mouse_genomes_project 9 103261255 103382795 - MGP_C57BL6NJ_P0094311 Pik3cb protein_coding protein_coding MGP_C57BL6NJ_T0094312.1 MGP_C57BL6NJ_G0035659.1 mouse_genomes_project 9 103263002 103382633 - MGP_C57BL6NJ_P0094312 Pik3cb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094313.1 MGP_C57BL6NJ_G0035659.1 mouse_genomes_project 9 103339704 103383329 - MGP_C57BL6NJ_P0094313 Pik3cb protein_coding protein_coding MGP_C57BL6NJ_T0011367.1 MGP_C57BL6NJ_G0009452.1 mouse_genomes_project 9 121112986 121113107 + Mir467h miRNA miRNA MGP_C57BL6NJ_T0091672.1 MGP_C57BL6NJ_G0034828.1 mouse_genomes_project 9 5291406 5308551 + MGP_C57BL6NJ_P0091672 1700128F08Rik protein_coding protein_coding MGP_C57BL6NJ_T0095631.1 MGP_C57BL6NJ_G0035898.1 mouse_genomes_project 9 121713844 121862610 + MGP_C57BL6NJ_P0095631 Gadl1 protein_coding protein_coding MGP_C57BL6NJ_T0091886.1 MGP_C57BL6NJ_G0034915.1 mouse_genomes_project 9 18546038 18606952 - MGP_C57BL6NJ_P0091886 Olfm2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091887.1 MGP_C57BL6NJ_G0034915.1 mouse_genomes_project 9 18546336 18608391 - MGP_C57BL6NJ_P0091887 Olfm2 protein_coding protein_coding MGP_C57BL6NJ_T0093073.1 MGP_C57BL6NJ_G0035363.1 mouse_genomes_project 9 58390117 58396894 + MGP_C57BL6NJ_P0093073 Ulk3 protein_coding protein_coding MGP_C57BL6NJ_T0092556.1 MGP_C57BL6NJ_G0035196.1 mouse_genomes_project 9 44093547 44100838 - MGP_C57BL6NJ_P0092556 Hmbs protein_coding protein_coding MGP_C57BL6NJ_T0092557.1 MGP_C57BL6NJ_G0035196.1 mouse_genomes_project 9 44093547 44102685 - MGP_C57BL6NJ_P0092557 Hmbs protein_coding protein_coding MGP_C57BL6NJ_T0092357.1 MGP_C57BL6NJ_G0035103.1 mouse_genomes_project 9 37966371 37967291 - MGP_C57BL6NJ_P0092357 Olfr919 protein_coding protein_coding MGP_C57BL6NJ_T0093764.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77689114 77710372 - Mapk6 protein_coding processed_transcript MGP_C57BL6NJ_T0093765.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77709554 77732915 - MGP_C57BL6NJ_P0093765 Mapk6 protein_coding protein_coding MGP_C57BL6NJ_T0093766.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77714431 77718950 - Mapk6 protein_coding retained_intron MGP_C57BL6NJ_T0093767.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77715076 77732946 - Mapk6 protein_coding retained_intron MGP_C57BL6NJ_T0093768.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77719601 77732533 - Mapk6 protein_coding processed_transcript MGP_C57BL6NJ_T0093769.1 MGP_C57BL6NJ_G0035530.1 mouse_genomes_project 9 77719754 77732935 - Mapk6 protein_coding processed_transcript MGP_C57BL6NJ_T0099179.1 MGP_C57BL6NJ_G0037243.1 mouse_genomes_project 9 67399991 67400104 + n-R5s85 rRNA rRNA MGP_C57BL6NJ_T0092025.1 MGP_C57BL6NJ_G0034972.1 mouse_genomes_project 9 20301845 20319034 + MGP_C57BL6NJ_P0092025 Zfp809 protein_coding protein_coding MGP_C57BL6NJ_T0092308.1 MGP_C57BL6NJ_G0035060.1 mouse_genomes_project 9 36679160 36687551 - MGP_C57BL6NJ_P0092308 Nrgn protein_coding protein_coding MGP_C57BL6NJ_T0092309.1 MGP_C57BL6NJ_G0035060.1 mouse_genomes_project 9 36679622 36680807 - Nrgn protein_coding processed_transcript MGP_C57BL6NJ_T0092170.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34100766 34116596 - MGP_C57BL6NJ_P0092170 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092171.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34103050 34116293 - MGP_C57BL6NJ_P0092171 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092172.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34103050 34116233 - MGP_C57BL6NJ_P0092172 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092173.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34103609 34116275 - MGP_C57BL6NJ_P0092173 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092174.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34104994 34116188 - MGP_C57BL6NJ_P0092174 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092175.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34105291 34107666 - MGP_C57BL6NJ_P0092175 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0092176.1 MGP_C57BL6NJ_G0035020.1 mouse_genomes_project 9 34107302 34115804 - MGP_C57BL6NJ_P0092176 Tirap protein_coding protein_coding MGP_C57BL6NJ_T0095595.1 MGP_C57BL6NJ_G0035878.1 mouse_genomes_project 9 119476565 119524007 + MGP_C57BL6NJ_P0095595 Ubp1 protein_coding protein_coding MGP_C57BL6NJ_T0095596.1 MGP_C57BL6NJ_G0035878.1 mouse_genomes_project 9 119476565 119524007 + MGP_C57BL6NJ_P0095596 Ubp1 protein_coding protein_coding MGP_C57BL6NJ_T0095597.1 MGP_C57BL6NJ_G0035878.1 mouse_genomes_project 9 119476994 119523625 + MGP_C57BL6NJ_P0095597 Ubp1 protein_coding protein_coding MGP_C57BL6NJ_T0095610.1 MGP_C57BL6NJ_G0035886.1 mouse_genomes_project 9 120020128 120030152 + MGP_C57BL6NJ_P0095610 Tmppe protein_coding protein_coding MGP_C57BL6NJ_T0092381.1 MGP_C57BL6NJ_G0035121.1 mouse_genomes_project 9 38518444 38519380 + MGP_C57BL6NJ_P0092381 Olfr944 protein_coding protein_coding MGP_C57BL6NJ_T0093480.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68650485 68656928 + MGP_C57BL6NJ_P0093480 Rps27l protein_coding protein_coding MGP_C57BL6NJ_T0093481.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68650490 68656930 + MGP_C57BL6NJ_P0093481 Rps27l protein_coding protein_coding MGP_C57BL6NJ_T0093482.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68650565 68656884 + MGP_C57BL6NJ_P0093482 Rps27l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093483.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68650754 68656932 + Rps27l protein_coding processed_transcript MGP_C57BL6NJ_T0093484.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68652041 68656884 + MGP_C57BL6NJ_P0093484 Rps27l protein_coding protein_coding MGP_C57BL6NJ_T0093485.1 MGP_C57BL6NJ_G0035475.1 mouse_genomes_project 9 68655978 68656927 + Rps27l protein_coding retained_intron MGP_C57BL6NJ_T0095542.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116656479 116742134 + MGP_C57BL6NJ_P0095542 Trank1 protein_coding protein_coding MGP_C57BL6NJ_T0095543.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116656680 116703749 + Trank1 protein_coding processed_transcript MGP_C57BL6NJ_T0095544.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116656836 116689818 + MGP_C57BL6NJ_P0095544 Trank1 protein_coding protein_coding MGP_C57BL6NJ_T0095545.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116721364 116742134 + Trank1 protein_coding processed_transcript MGP_C57BL6NJ_T0095546.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116721427 116735595 + Trank1 protein_coding processed_transcript MGP_C57BL6NJ_T0095547.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116721432 116731701 + Trank1 protein_coding processed_transcript MGP_C57BL6NJ_T0095548.1 MGP_C57BL6NJ_G0035871.1 mouse_genomes_project 9 116732702 116736513 + Trank1 protein_coding retained_intron MGP_C57BL6NJ_T0002522.1 MGP_C57BL6NJ_G0002410.1 mouse_genomes_project 9 74990128 74992038 + TEC TEC MGP_C57BL6NJ_T0009411.1 MGP_C57BL6NJ_G0007562.1 mouse_genomes_project 9 32799941 32859053 + Gm27164 lincRNA lincRNA MGP_C57BL6NJ_T0002510.1 MGP_C57BL6NJ_G0002398.1 mouse_genomes_project 9 74051335 74052979 - TEC TEC MGP_C57BL6NJ_T0012003.1 MGP_C57BL6NJ_G0010088.1 mouse_genomes_project 9 63205698 63205791 + Gm23221 misc_RNA misc_RNA MGP_C57BL6NJ_T0101998.1 MGP_C57BL6NJ_G0040044.1 mouse_genomes_project 9 36264191 36264306 - Gm25273 snoRNA snoRNA MGP_C57BL6NJ_T0094079.1 MGP_C57BL6NJ_G0035607.1 mouse_genomes_project 9 92436178 92446503 - MGP_C57BL6NJ_P0094079 protein_coding protein_coding MGP_C57BL6NJ_T0092619.1 MGP_C57BL6NJ_G0035213.1 mouse_genomes_project 9 44607195 44610747 - MGP_C57BL6NJ_P0092619 Ttc36 protein_coding protein_coding MGP_C57BL6NJ_T0093075.1 MGP_C57BL6NJ_G0035365.1 mouse_genomes_project 9 58407745 58424954 - MGP_C57BL6NJ_P0093075 Lman1l protein_coding protein_coding MGP_C57BL6NJ_T0093076.1 MGP_C57BL6NJ_G0035365.1 mouse_genomes_project 9 58407745 58424954 - MGP_C57BL6NJ_P0093076 Lman1l protein_coding protein_coding MGP_C57BL6NJ_T0092311.1 MGP_C57BL6NJ_G0035062.1 mouse_genomes_project 9 36750191 36787119 + MGP_C57BL6NJ_P0092311 Siae protein_coding protein_coding MGP_C57BL6NJ_T0092091.1 MGP_C57BL6NJ_G0034998.1 mouse_genomes_project 9 25682724 25713831 + MGP_C57BL6NJ_P0092091 Igsf9b protein_coding protein_coding MGP_C57BL6NJ_T0092092.1 MGP_C57BL6NJ_G0034998.1 mouse_genomes_project 9 25682726 25718457 + MGP_C57BL6NJ_P0092092 Igsf9b protein_coding protein_coding MGP_C57BL6NJ_T0092093.1 MGP_C57BL6NJ_G0034998.1 mouse_genomes_project 9 25682950 25729672 + MGP_C57BL6NJ_P0092093 Igsf9b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092992.1 MGP_C57BL6NJ_G0035335.1 mouse_genomes_project 9 56160820 56164719 + MGP_C57BL6NJ_P0092992 Isl2 protein_coding protein_coding MGP_C57BL6NJ_T0092993.1 MGP_C57BL6NJ_G0035335.1 mouse_genomes_project 9 56163296 56168329 + MGP_C57BL6NJ_P0092993 Isl2 protein_coding protein_coding MGP_C57BL6NJ_T0092994.1 MGP_C57BL6NJ_G0035335.1 mouse_genomes_project 9 56163355 56168329 + MGP_C57BL6NJ_P0092994 Isl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092995.1 MGP_C57BL6NJ_G0035335.1 mouse_genomes_project 9 56163355 56168327 + MGP_C57BL6NJ_P0092995 Isl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092996.1 MGP_C57BL6NJ_G0035335.1 mouse_genomes_project 9 56164484 56166429 + Isl2 protein_coding retained_intron MGP_C57BL6NJ_T0092045.1 MGP_C57BL6NJ_G0034981.1 mouse_genomes_project 9 22315475 22526203 + MGP_C57BL6NJ_P0092045 Npsr1 protein_coding protein_coding MGP_C57BL6NJ_T0092046.1 MGP_C57BL6NJ_G0034981.1 mouse_genomes_project 9 22315497 22552729 + MGP_C57BL6NJ_P0092046 Npsr1 protein_coding protein_coding MGP_C57BL6NJ_T0092047.1 MGP_C57BL6NJ_G0034981.1 mouse_genomes_project 9 22493207 22550144 + MGP_C57BL6NJ_P0092047 Npsr1 protein_coding protein_coding MGP_C57BL6NJ_T0092048.1 MGP_C57BL6NJ_G0034981.1 mouse_genomes_project 9 22536704 22551202 + Npsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0092005.1 MGP_C57BL6NJ_G0034963.1 mouse_genomes_project 9 20036709 20049381 + MGP_C57BL6NJ_P0092005 Prkcsh protein_coding protein_coding MGP_C57BL6NJ_T0092006.1 MGP_C57BL6NJ_G0034963.1 mouse_genomes_project 9 20036709 20049381 + MGP_C57BL6NJ_P0092006 Prkcsh protein_coding protein_coding MGP_C57BL6NJ_T0009405.1 MGP_C57BL6NJ_G0007556.1 mouse_genomes_project 9 23455908 23456355 + Gm29375 lincRNA lincRNA MGP_C57BL6NJ_T0094954.1 MGP_C57BL6NJ_G0035770.1 mouse_genomes_project 9 112870885 112885156 + Gm20661 protein_coding retained_intron MGP_C57BL6NJ_T0094955.1 MGP_C57BL6NJ_G0035770.1 mouse_genomes_project 9 112870920 112884190 + Gm20661 protein_coding retained_intron MGP_C57BL6NJ_T0094956.1 MGP_C57BL6NJ_G0035770.1 mouse_genomes_project 9 112871114 112884711 + MGP_C57BL6NJ_P0094956 Gm20661 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094388.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105376843 105441688 - MGP_C57BL6NJ_P0094388 Pccb protein_coding protein_coding MGP_C57BL6NJ_T0094389.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105376843 105441667 - MGP_C57BL6NJ_P0094389 Pccb protein_coding protein_coding MGP_C57BL6NJ_T0094390.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105379184 105380421 - Pccb protein_coding retained_intron MGP_C57BL6NJ_T0094391.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105393868 105441660 - MGP_C57BL6NJ_P0094391 Pccb protein_coding protein_coding MGP_C57BL6NJ_T0094392.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105411718 105441647 - Pccb protein_coding processed_transcript MGP_C57BL6NJ_T0094393.1 MGP_C57BL6NJ_G0035674.1 mouse_genomes_project 9 105423764 105441671 - MGP_C57BL6NJ_P0094393 Pccb protein_coding protein_coding MGP_C57BL6NJ_T0095716.1 MGP_C57BL6NJ_G0035921.1 mouse_genomes_project 9 125603616 125687518 - MGP_C57BL6NJ_P0095716 Scn5a protein_coding protein_coding MGP_C57BL6NJ_T0095717.1 MGP_C57BL6NJ_G0035921.1 mouse_genomes_project 9 125603618 125703872 - MGP_C57BL6NJ_P0095717 Scn5a protein_coding protein_coding MGP_C57BL6NJ_T0095718.1 MGP_C57BL6NJ_G0035921.1 mouse_genomes_project 9 125604532 125703872 - MGP_C57BL6NJ_P0095718 Scn5a protein_coding protein_coding MGP_C57BL6NJ_T0095719.1 MGP_C57BL6NJ_G0035921.1 mouse_genomes_project 9 125605786 125687464 - MGP_C57BL6NJ_P0095719 Scn5a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095720.1 MGP_C57BL6NJ_G0035921.1 mouse_genomes_project 9 125687376 125688343 - MGP_C57BL6NJ_P0095720 Scn5a protein_coding protein_coding MGP_C57BL6NJ_T0012018.1 MGP_C57BL6NJ_G0010103.1 mouse_genomes_project 9 129271942 129272210 + Gm25341 misc_RNA misc_RNA MGP_C57BL6NJ_T0016627.1 MGP_C57BL6NJ_G0014672.1 mouse_genomes_project 9 113076066 113076589 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009447.1 MGP_C57BL6NJ_G0007590.1 mouse_genomes_project 9 64084551 64089400 + Gm26609 lincRNA lincRNA MGP_C57BL6NJ_T0009500.1 MGP_C57BL6NJ_G0007630.1 mouse_genomes_project 9 100514291 100521102 - lincRNA lincRNA MGP_C57BL6NJ_T0016590.1 MGP_C57BL6NJ_G0014635.1 mouse_genomes_project 9 98237119 98237693 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092750.1 MGP_C57BL6NJ_G0035253.1 mouse_genomes_project 9 48594873 48607096 - MGP_C57BL6NJ_P0092750 Rexo2 protein_coding protein_coding MGP_C57BL6NJ_T0094396.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105517772 105670677 - MGP_C57BL6NJ_P0094396 Ppp2r3a protein_coding protein_coding MGP_C57BL6NJ_T0094397.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105517974 105610591 - MGP_C57BL6NJ_P0094397 Ppp2r3a protein_coding protein_coding MGP_C57BL6NJ_T0094398.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105520571 105541757 - Ppp2r3a protein_coding processed_transcript MGP_C57BL6NJ_T0094399.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105540876 105610369 - Ppp2r3a protein_coding retained_intron MGP_C57BL6NJ_T0094400.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105604110 105610523 - Ppp2r3a protein_coding retained_intron MGP_C57BL6NJ_T0094401.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105608983 105612062 - Ppp2r3a protein_coding retained_intron MGP_C57BL6NJ_T0094402.1 MGP_C57BL6NJ_G0035676.1 mouse_genomes_project 9 105617696 105623341 - Ppp2r3a protein_coding processed_transcript MGP_C57BL6NJ_T0093004.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56780575 56825355 + MGP_C57BL6NJ_P0093004 Pstpip1 protein_coding protein_coding MGP_C57BL6NJ_T0093005.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56780589 56825343 + Pstpip1 protein_coding retained_intron MGP_C57BL6NJ_T0093006.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56780589 56825339 + Pstpip1 protein_coding retained_intron MGP_C57BL6NJ_T0093007.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56812829 56818476 + Pstpip1 protein_coding processed_transcript MGP_C57BL6NJ_T0093008.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56814632 56816300 + Pstpip1 protein_coding retained_intron MGP_C57BL6NJ_T0093009.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56815597 56818535 + Pstpip1 protein_coding retained_intron MGP_C57BL6NJ_T0093010.1 MGP_C57BL6NJ_G0035339.1 mouse_genomes_project 9 56815597 56816590 + Pstpip1 protein_coding retained_intron MGP_C57BL6NJ_T0009460.1 MGP_C57BL6NJ_G0007600.1 mouse_genomes_project 9 74867638 74869802 - Gm27204 lincRNA lincRNA MGP_C57BL6NJ_T0095729.1 MGP_C57BL6NJ_G0035927.1 mouse_genomes_project 9 126145127 126159181 - MGP_C57BL6NJ_P0095729 Csrnp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093515.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 70459612 70470766 + Rora protein_coding processed_transcript MGP_C57BL6NJ_T0093516.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 70459612 71234723 + MGP_C57BL6NJ_P0093516 Rora protein_coding protein_coding MGP_C57BL6NJ_T0093517.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 70459717 71210630 + MGP_C57BL6NJ_P0093517 Rora protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093518.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 70461129 70469979 + Rora protein_coding processed_transcript MGP_C57BL6NJ_T0093519.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 71036623 71096538 + Rora protein_coding processed_transcript MGP_C57BL6NJ_T0093520.1 MGP_C57BL6NJ_G0035482.1 mouse_genomes_project 9 71136628 71225979 + MGP_C57BL6NJ_P0093520 Rora protein_coding protein_coding MGP_C57BL6NJ_T0093668.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74597594 74694400 + MGP_C57BL6NJ_P0093668 Rfx7 protein_coding protein_coding MGP_C57BL6NJ_T0093669.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74597594 74694292 + MGP_C57BL6NJ_P0093669 Rfx7 protein_coding protein_coding MGP_C57BL6NJ_T0093670.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74597597 74671397 + Rfx7 protein_coding processed_transcript MGP_C57BL6NJ_T0093671.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74597963 74680464 + MGP_C57BL6NJ_P0093671 Rfx7 protein_coding protein_coding MGP_C57BL6NJ_T0093672.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74598089 74680527 + MGP_C57BL6NJ_P0093672 Rfx7 protein_coding protein_coding MGP_C57BL6NJ_T0093673.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74665981 74668739 + Rfx7 protein_coding retained_intron MGP_C57BL6NJ_T0093674.1 MGP_C57BL6NJ_G0035508.1 mouse_genomes_project 9 74676766 74680515 + Rfx7 protein_coding retained_intron MGP_C57BL6NJ_T0094117.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93651138 93698110 + MGP_C57BL6NJ_P0094117 Adamts7 protein_coding protein_coding MGP_C57BL6NJ_T0094118.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93651147 93706081 + MGP_C57BL6NJ_P0094118 Adamts7 protein_coding protein_coding MGP_C57BL6NJ_T0094119.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93651193 93698110 + MGP_C57BL6NJ_P0094119 Adamts7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094120.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93651271 93698000 + MGP_C57BL6NJ_P0094120 Adamts7 protein_coding protein_coding MGP_C57BL6NJ_T0094121.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93651295 93698112 + MGP_C57BL6NJ_P0094121 Adamts7 protein_coding protein_coding MGP_C57BL6NJ_T0094122.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93686663 93689575 + Adamts7 protein_coding retained_intron MGP_C57BL6NJ_T0094123.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93688993 93691497 + Adamts7 protein_coding processed_transcript MGP_C57BL6NJ_T0094124.1 MGP_C57BL6NJ_G0035615.1 mouse_genomes_project 9 93693137 93698107 + Adamts7 protein_coding retained_intron MGP_C57BL6NJ_T0092539.1 MGP_C57BL6NJ_G0035188.1 mouse_genomes_project 9 43983589 43990124 + MGP_C57BL6NJ_P0092539 Ccdc153 protein_coding protein_coding MGP_C57BL6NJ_T0011336.1 MGP_C57BL6NJ_G0009421.1 mouse_genomes_project 9 68964546 68964613 - Mir190a miRNA miRNA MGP_C57BL6NJ_T0009403.1 MGP_C57BL6NJ_G0007554.1 mouse_genomes_project 9 20129219 20145301 + Gm16845 lincRNA lincRNA MGP_C57BL6NJ_T0091592.1 MGP_C57BL6NJ_G0034798.1 mouse_genomes_project 9 117497 177986 + MGP_C57BL6NJ_P0091592 Alkbh8 protein_coding protein_coding MGP_C57BL6NJ_T0091593.1 MGP_C57BL6NJ_G0034798.1 mouse_genomes_project 9 120422 176778 + MGP_C57BL6NJ_P0091593 Alkbh8 protein_coding protein_coding MGP_C57BL6NJ_T0019060.1 MGP_C57BL6NJ_G0016156.1 mouse_genomes_project 9 119975736 119994599 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019061.1 MGP_C57BL6NJ_G0016156.1 mouse_genomes_project 9 119975757 119993816 + processed_transcript processed_transcript MGP_C57BL6NJ_T0019062.1 MGP_C57BL6NJ_G0016156.1 mouse_genomes_project 9 119975849 119980419 + processed_transcript processed_transcript MGP_C57BL6NJ_T0092467.1 MGP_C57BL6NJ_G0035168.1 mouse_genomes_project 9 40506857 40660292 - MGP_C57BL6NJ_P0092467 Ubash3b protein_coding protein_coding MGP_C57BL6NJ_T0092468.1 MGP_C57BL6NJ_G0035168.1 mouse_genomes_project 9 40552843 40664264 - Ubash3b protein_coding processed_transcript MGP_C57BL6NJ_T0092469.1 MGP_C57BL6NJ_G0035168.1 mouse_genomes_project 9 40552871 40660368 - MGP_C57BL6NJ_P0092469 Ubash3b protein_coding protein_coding MGP_C57BL6NJ_T0092470.1 MGP_C57BL6NJ_G0035168.1 mouse_genomes_project 9 40552929 40664432 - MGP_C57BL6NJ_P0092470 Ubash3b protein_coding protein_coding MGP_C57BL6NJ_T0092471.1 MGP_C57BL6NJ_G0035168.1 mouse_genomes_project 9 40662809 40664441 - Ubash3b protein_coding processed_transcript MGP_C57BL6NJ_T0011297.1 MGP_C57BL6NJ_G0009382.1 mouse_genomes_project 9 5314056 5314152 + Mir1899 miRNA miRNA MGP_C57BL6NJ_T0012006.1 MGP_C57BL6NJ_G0010091.1 mouse_genomes_project 9 82779550 82779836 + Gm25433 misc_RNA misc_RNA MGP_C57BL6NJ_T0092848.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51134719 51152101 + Ppp2r1b protein_coding processed_transcript MGP_C57BL6NJ_T0092849.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146318 51185027 + MGP_C57BL6NJ_P0092849 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092850.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146318 51186459 + MGP_C57BL6NJ_P0092850 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092851.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146331 51172942 + MGP_C57BL6NJ_P0092851 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092852.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146351 51171598 + MGP_C57BL6NJ_P0092852 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092853.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146357 51185034 + MGP_C57BL6NJ_P0092853 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092854.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146358 51185027 + MGP_C57BL6NJ_P0092854 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092855.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146360 51171445 + MGP_C57BL6NJ_P0092855 Ppp2r1b protein_coding protein_coding MGP_C57BL6NJ_T0092856.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51146373 51171918 + MGP_C57BL6NJ_P0092856 Ppp2r1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092857.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51160373 51171540 + MGP_C57BL6NJ_P0092857 Ppp2r1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092858.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51164627 51169573 + Ppp2r1b protein_coding processed_transcript MGP_C57BL6NJ_T0092859.1 MGP_C57BL6NJ_G0035286.1 mouse_genomes_project 9 51169595 51170647 + Ppp2r1b protein_coding retained_intron MGP_C57BL6NJ_T0011307.1 MGP_C57BL6NJ_G0009392.1 mouse_genomes_project 9 18996603 18996695 - Mir7082 miRNA miRNA MGP_C57BL6NJ_T0005593.1 MGP_C57BL6NJ_G0004734.1 mouse_genomes_project 9 42085645 42121821 + Gm16322 antisense antisense MGP_C57BL6NJ_T0005594.1 MGP_C57BL6NJ_G0004734.1 mouse_genomes_project 9 42086664 42118570 + Gm16322 antisense antisense MGP_C57BL6NJ_T0095877.1 MGP_C57BL6NJ_G0035974.1 mouse_genomes_project 9 129689193 129735346 - MGP_C57BL6NJ_P0095877 Cdcp1 protein_coding protein_coding MGP_C57BL6NJ_T0095878.1 MGP_C57BL6NJ_G0035974.1 mouse_genomes_project 9 129691433 129698354 - Cdcp1 protein_coding retained_intron MGP_C57BL6NJ_T0095879.1 MGP_C57BL6NJ_G0035974.1 mouse_genomes_project 9 129701010 129735307 - Cdcp1 protein_coding retained_intron MGP_C57BL6NJ_T0002536.1 MGP_C57BL6NJ_G0002424.1 mouse_genomes_project 9 86422082 86424703 + TEC TEC MGP_C57BL6NJ_T0095608.1 MGP_C57BL6NJ_G0035884.1 mouse_genomes_project 9 119989164 120009683 - MGP_C57BL6NJ_P0095608 Crtap protein_coding protein_coding MGP_C57BL6NJ_T0092214.1 MGP_C57BL6NJ_G0035028.1 mouse_genomes_project 9 34490273 34499849 - MGP_C57BL6NJ_P0092214 Hyls1 protein_coding protein_coding MGP_C57BL6NJ_T0092215.1 MGP_C57BL6NJ_G0035028.1 mouse_genomes_project 9 34493908 34499548 - Hyls1 protein_coding retained_intron MGP_C57BL6NJ_T0093447.1 MGP_C57BL6NJ_G0035466.1 mouse_genomes_project 9 67755049 67823410 + Dapk2 protein_coding retained_intron MGP_C57BL6NJ_T0093448.1 MGP_C57BL6NJ_G0035466.1 mouse_genomes_project 9 67764794 67898363 + MGP_C57BL6NJ_P0093448 Dapk2 protein_coding protein_coding MGP_C57BL6NJ_T0093449.1 MGP_C57BL6NJ_G0035466.1 mouse_genomes_project 9 67822076 67895585 + MGP_C57BL6NJ_P0093449 Dapk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092916.1 MGP_C57BL6NJ_G0035309.1 mouse_genomes_project 9 54382559 54386153 + MGP_C57BL6NJ_P0092916 Sln protein_coding protein_coding MGP_C57BL6NJ_T0016537.1 MGP_C57BL6NJ_G0014582.1 mouse_genomes_project 9 77399013 77401246 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095238.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113972777 114014137 + MGP_C57BL6NJ_P0095238 Pfkfb4 protein_coding protein_coding MGP_C57BL6NJ_T0095239.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113972901 114014137 + MGP_C57BL6NJ_P0095239 Pfkfb4 protein_coding protein_coding MGP_C57BL6NJ_T0095240.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113972947 113980260 + Pfkfb4 protein_coding retained_intron MGP_C57BL6NJ_T0095241.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113972991 113973901 + Pfkfb4 protein_coding retained_intron MGP_C57BL6NJ_T0095242.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113973015 114012621 + Pfkfb4 protein_coding retained_intron MGP_C57BL6NJ_T0095243.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113973015 114012621 + MGP_C57BL6NJ_P0095243 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095244.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113973015 114012621 + MGP_C57BL6NJ_P0095244 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095245.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113979878 113993489 + Pfkfb4 protein_coding processed_transcript MGP_C57BL6NJ_T0095246.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 113994018 114010804 + MGP_C57BL6NJ_P0095246 Pfkfb4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095247.1 MGP_C57BL6NJ_G0035813.1 mouse_genomes_project 9 114000230 114014106 + Pfkfb4 protein_coding processed_transcript MGP_C57BL6NJ_T0093776.1 MGP_C57BL6NJ_G0035535.1 mouse_genomes_project 9 77983441 78027612 - MGP_C57BL6NJ_P0093776 Scg3 protein_coding protein_coding MGP_C57BL6NJ_T0093164.1 MGP_C57BL6NJ_G0035387.1 mouse_genomes_project 9 59748429 59787706 + MGP_C57BL6NJ_P0093164 Hcn4 protein_coding protein_coding MGP_C57BL6NJ_T0092887.1 MGP_C57BL6NJ_G0035299.1 mouse_genomes_project 9 53569725 53728677 - MGP_C57BL6NJ_P0092887 Ddx10 protein_coding protein_coding MGP_C57BL6NJ_T0094787.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112418551 112429264 + MGP_C57BL6NJ_P0094787 Rassf1 protein_coding protein_coding MGP_C57BL6NJ_T0094788.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112418558 112421503 + Rassf1 protein_coding retained_intron MGP_C57BL6NJ_T0094789.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112418563 112429260 + MGP_C57BL6NJ_P0094789 Rassf1 protein_coding protein_coding MGP_C57BL6NJ_T0094790.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112418586 112429260 + MGP_C57BL6NJ_P0094790 Rassf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094791.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112421579 112429260 + MGP_C57BL6NJ_P0094791 Rassf1 protein_coding protein_coding MGP_C57BL6NJ_T0094792.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112422372 112424797 + Rassf1 protein_coding processed_transcript MGP_C57BL6NJ_T0094793.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112423607 112429260 + Rassf1 protein_coding processed_transcript MGP_C57BL6NJ_T0094794.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112423739 112429260 + Rassf1 protein_coding retained_intron MGP_C57BL6NJ_T0094795.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112424931 112428835 + Rassf1 protein_coding retained_intron MGP_C57BL6NJ_T0094796.1 MGP_C57BL6NJ_G0035750.1 mouse_genomes_project 9 112424938 112427432 + Rassf1 protein_coding retained_intron MGP_C57BL6NJ_T0092150.1 MGP_C57BL6NJ_G0035015.1 mouse_genomes_project 9 31193747 31321761 - MGP_C57BL6NJ_P0092150 Fli1 protein_coding protein_coding MGP_C57BL6NJ_T0092151.1 MGP_C57BL6NJ_G0035015.1 mouse_genomes_project 9 31205937 31323027 - MGP_C57BL6NJ_P0092151 Fli1 protein_coding protein_coding MGP_C57BL6NJ_T0011352.1 MGP_C57BL6NJ_G0009437.1 mouse_genomes_project 9 110896604 110896694 + Mir135a-1 miRNA miRNA MGP_C57BL6NJ_T0092385.1 MGP_C57BL6NJ_G0035125.1 mouse_genomes_project 9 38792243 38799195 + MGP_C57BL6NJ_P0092385 protein_coding protein_coding MGP_C57BL6NJ_T0016503.1 MGP_C57BL6NJ_G0014548.1 mouse_genomes_project 9 36828331 36829325 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016546.1 MGP_C57BL6NJ_G0014591.1 mouse_genomes_project 9 79575425 79577625 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018981.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 40913946 41143996 + processed_transcript lincRNA MGP_C57BL6NJ_T0018982.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 40914075 41033299 + processed_transcript lincRNA MGP_C57BL6NJ_T0018983.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 40914110 40974544 + processed_transcript lincRNA MGP_C57BL6NJ_T0018984.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41017916 41144453 + processed_transcript lincRNA MGP_C57BL6NJ_T0018985.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41018024 41170259 + processed_transcript lincRNA MGP_C57BL6NJ_T0018986.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41132352 41146803 + processed_transcript lincRNA MGP_C57BL6NJ_T0018987.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41132832 41146806 + processed_transcript lincRNA MGP_C57BL6NJ_T0018988.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41133605 41146804 + processed_transcript processed_transcript MGP_C57BL6NJ_T0018989.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41134117 41167837 + processed_transcript lincRNA MGP_C57BL6NJ_T0018990.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41134131 41170063 + processed_transcript lincRNA MGP_C57BL6NJ_T0018991.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41134203 41146464 + processed_transcript lincRNA MGP_C57BL6NJ_T0018992.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41142470 41146714 + processed_transcript retained_intron MGP_C57BL6NJ_T0018993.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41154236 41167803 + processed_transcript lincRNA MGP_C57BL6NJ_T0018994.1 MGP_C57BL6NJ_G0016130.1 mouse_genomes_project 9 41169310 41172846 + processed_transcript retained_intron MGP_C57BL6NJ_T0005650.1 MGP_C57BL6NJ_G0004770.1 mouse_genomes_project 9 84643893 84736784 - Gm26907 antisense antisense MGP_C57BL6NJ_T0102041.1 MGP_C57BL6NJ_G0040087.1 mouse_genomes_project 9 109076328 109076471 - Gm25904 snoRNA snoRNA MGP_C57BL6NJ_T0093257.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63553884 63594750 + Anp32a protein_coding processed_transcript MGP_C57BL6NJ_T0093258.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63553920 63598744 + MGP_C57BL6NJ_P0093258 Anp32a protein_coding protein_coding MGP_C57BL6NJ_T0093259.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63554493 63591771 + MGP_C57BL6NJ_P0093259 Anp32a protein_coding protein_coding MGP_C57BL6NJ_T0093260.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63554666 63594721 + MGP_C57BL6NJ_P0093260 Anp32a protein_coding protein_coding MGP_C57BL6NJ_T0093261.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63555055 63590636 + MGP_C57BL6NJ_P0093261 Anp32a protein_coding protein_coding MGP_C57BL6NJ_T0093262.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63556654 63590649 + Anp32a protein_coding processed_transcript MGP_C57BL6NJ_T0093263.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63557390 63591768 + Anp32a protein_coding processed_transcript MGP_C57BL6NJ_T0093264.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63584004 63590729 + Anp32a protein_coding processed_transcript MGP_C57BL6NJ_T0093265.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63584010 63594356 + Anp32a protein_coding processed_transcript MGP_C57BL6NJ_T0093266.1 MGP_C57BL6NJ_G0035412.1 mouse_genomes_project 9 63590491 63597713 + Anp32a protein_coding retained_intron MGP_C57BL6NJ_T0009550.1 MGP_C57BL6NJ_G0007668.1 mouse_genomes_project 9 129376846 129395838 - A530083I20Rik lincRNA lincRNA MGP_C57BL6NJ_T0009551.1 MGP_C57BL6NJ_G0007668.1 mouse_genomes_project 9 129387137 129395824 - A530083I20Rik lincRNA lincRNA MGP_C57BL6NJ_T0095909.1 MGP_C57BL6NJ_G0035984.1 mouse_genomes_project 9 130366260 130371538 + MGP_C57BL6NJ_P0095909 Cxcr6 protein_coding protein_coding MGP_C57BL6NJ_T0009402.1 MGP_C57BL6NJ_G0007553.1 mouse_genomes_project 9 19716536 19723790 - Gm26511 lincRNA lincRNA MGP_C57BL6NJ_T0002570.1 MGP_C57BL6NJ_G0002457.1 mouse_genomes_project 9 105038101 105041351 + TEC TEC MGP_C57BL6NJ_T0005613.1 MGP_C57BL6NJ_G0004746.1 mouse_genomes_project 9 56959371 56970307 + Peak1os antisense antisense MGP_C57BL6NJ_T0011364.1 MGP_C57BL6NJ_G0009449.1 mouse_genomes_project 9 115865418 115865535 - Mir8107 miRNA miRNA MGP_C57BL6NJ_T0093226.1 MGP_C57BL6NJ_G0035403.1 mouse_genomes_project 9 61787213 61808029 + MGP_C57BL6NJ_P0093226 Larp6 protein_coding protein_coding MGP_C57BL6NJ_T0093572.1 MGP_C57BL6NJ_G0035494.1 mouse_genomes_project 9 72558034 72624519 - MGP_C57BL6NJ_P0093572 Fam63b protein_coding protein_coding MGP_C57BL6NJ_T0102051.1 MGP_C57BL6NJ_G0040097.1 mouse_genomes_project 9 126316399 126316555 + Gm24044 snoRNA snoRNA MGP_C57BL6NJ_T0009435.1 MGP_C57BL6NJ_G0007580.1 mouse_genomes_project 9 57329562 57338236 + Gm26868 lincRNA lincRNA MGP_C57BL6NJ_T0016505.1 MGP_C57BL6NJ_G0014550.1 mouse_genomes_project 9 37370983 37372018 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095001.1 MGP_C57BL6NJ_G0035777.1 mouse_genomes_project 9 112952988 112955531 + MGP_C57BL6NJ_P0095001 Amigo3 protein_coding protein_coding MGP_C57BL6NJ_T0016551.1 MGP_C57BL6NJ_G0014596.1 mouse_genomes_project 9 82817563 82817891 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005633.1 MGP_C57BL6NJ_G0004759.1 mouse_genomes_project 9 74416063 74468079 - BC065403 antisense antisense MGP_C57BL6NJ_T0005634.1 MGP_C57BL6NJ_G0004759.1 mouse_genomes_project 9 74466777 74468001 - BC065403 antisense antisense MGP_C57BL6NJ_T0016579.1 MGP_C57BL6NJ_G0014624.1 mouse_genomes_project 9 94265689 94266290 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095291.1 MGP_C57BL6NJ_G0035822.1 mouse_genomes_project 9 114173708 114191472 - MGP_C57BL6NJ_P0095291 Fbxw13 protein_coding protein_coding MGP_C57BL6NJ_T0095292.1 MGP_C57BL6NJ_G0035822.1 mouse_genomes_project 9 114173729 114191459 - MGP_C57BL6NJ_P0095292 Fbxw13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095293.1 MGP_C57BL6NJ_G0035822.1 mouse_genomes_project 9 114176007 114191017 - MGP_C57BL6NJ_P0095293 Fbxw13 protein_coding protein_coding MGP_C57BL6NJ_T0099180.1 MGP_C57BL6NJ_G0037244.1 mouse_genomes_project 9 76266434 76266553 + n-R5s86 rRNA rRNA MGP_C57BL6NJ_T0091825.1 MGP_C57BL6NJ_G0034891.1 mouse_genomes_project 9 17308002 17308950 - MGP_C57BL6NJ_P0091825 Olfr854 protein_coding protein_coding MGP_C57BL6NJ_T0094559.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110096012 110159760 - MGP_C57BL6NJ_P0094559 Atp2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094560.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110096012 110225377 - MGP_C57BL6NJ_P0094560 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094561.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110096019 110195486 - MGP_C57BL6NJ_P0094561 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094563.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110102905 110196160 - MGP_C57BL6NJ_P0094563 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094564.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110103824 110196199 - MGP_C57BL6NJ_P0094564 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094565.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110103825 110225487 - MGP_C57BL6NJ_P0094565 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094566.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110105385 110133187 - Atp2c1 protein_coding processed_transcript MGP_C57BL6NJ_T0094567.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110107189 110110196 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0094568.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110112015 110129338 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0094569.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110116154 110196143 - MGP_C57BL6NJ_P0094569 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094570.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110131783 110140290 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0094571.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110142979 110195528 - Atp2c1 protein_coding processed_transcript MGP_C57BL6NJ_T0094572.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110150990 110171034 - MGP_C57BL6NJ_P0094572 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094573.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110151983 110196113 - MGP_C57BL6NJ_P0094573 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094574.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110152647 110196561 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0094575.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110152703 110195676 - MGP_C57BL6NJ_P0094575 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094576.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110158389 110231549 - Atp2c1 protein_coding processed_transcript MGP_C57BL6NJ_T0094577.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110158389 110196549 - MGP_C57BL6NJ_P0094577 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094578.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110159746 110196171 - MGP_C57BL6NJ_P0094578 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094579.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110165295 110195730 - MGP_C57BL6NJ_P0094579 Atp2c1 protein_coding protein_coding MGP_C57BL6NJ_T0094580.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110169750 110196171 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0094581.1 MGP_C57BL6NJ_G0035708.1 mouse_genomes_project 9 110224231 110225644 - Atp2c1 protein_coding retained_intron MGP_C57BL6NJ_T0092872.1 MGP_C57BL6NJ_G0035292.1 mouse_genomes_project 9 51602008 51610305 - MGP_C57BL6NJ_P0092872 Gm684 protein_coding protein_coding MGP_C57BL6NJ_T0095063.1 MGP_C57BL6NJ_G0035790.1 mouse_genomes_project 9 113393306 113413684 + MGP_C57BL6NJ_P0095063 BC048562 protein_coding protein_coding MGP_C57BL6NJ_T0095064.1 MGP_C57BL6NJ_G0035790.1 mouse_genomes_project 9 113393318 113413484 + BC048562 protein_coding processed_transcript MGP_C57BL6NJ_T0093079.1 MGP_C57BL6NJ_G0035368.1 mouse_genomes_project 9 58516569 58524555 + MGP_C57BL6NJ_P0093079 Cyp1a1 protein_coding protein_coding MGP_C57BL6NJ_T0094213.1 MGP_C57BL6NJ_G0035635.1 mouse_genomes_project 9 100065913 100147731 + MGP_C57BL6NJ_P0094213 Gk5 protein_coding protein_coding MGP_C57BL6NJ_T0094214.1 MGP_C57BL6NJ_G0035635.1 mouse_genomes_project 9 100065926 100152149 + MGP_C57BL6NJ_P0094214 Gk5 protein_coding protein_coding MGP_C57BL6NJ_T0094215.1 MGP_C57BL6NJ_G0035635.1 mouse_genomes_project 9 100065983 100150351 + MGP_C57BL6NJ_P0094215 Gk5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094216.1 MGP_C57BL6NJ_G0035635.1 mouse_genomes_project 9 100070771 100088626 + Gk5 protein_coding processed_transcript MGP_C57BL6NJ_T0094217.1 MGP_C57BL6NJ_G0035635.1 mouse_genomes_project 9 100138460 100141010 + Gk5 protein_coding retained_intron MGP_C57BL6NJ_T0093986.1 MGP_C57BL6NJ_G0035587.1 mouse_genomes_project 9 89471468 89634343 - MGP_C57BL6NJ_P0093986 Ube2cbp protein_coding protein_coding MGP_C57BL6NJ_T0093987.1 MGP_C57BL6NJ_G0035587.1 mouse_genomes_project 9 89471904 89634343 - MGP_C57BL6NJ_P0093987 Ube2cbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011315.1 MGP_C57BL6NJ_G0009400.1 mouse_genomes_project 9 41078626 41078706 + Mir100 miRNA miRNA MGP_C57BL6NJ_T0016523.1 MGP_C57BL6NJ_G0014568.1 mouse_genomes_project 9 73949193 73949902 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094286.1 MGP_C57BL6NJ_G0035647.1 mouse_genomes_project 9 102435603 102437946 + MGP_C57BL6NJ_P0094286 protein_coding protein_coding MGP_C57BL6NJ_T0009472.1 MGP_C57BL6NJ_G0007611.1 mouse_genomes_project 9 83969629 83997714 + Gm26713 lincRNA lincRNA MGP_C57BL6NJ_T0094873.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112558120 112587847 - MGP_C57BL6NJ_P0094873 Sema3f protein_coding protein_coding MGP_C57BL6NJ_T0094874.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112559038 112582928 - MGP_C57BL6NJ_P0094874 Sema3f protein_coding protein_coding MGP_C57BL6NJ_T0094875.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112559742 112561382 - Sema3f protein_coding retained_intron MGP_C57BL6NJ_T0094876.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112559742 112587391 - MGP_C57BL6NJ_P0094876 Sema3f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094877.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112560611 112563883 - MGP_C57BL6NJ_P0094877 Sema3f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094878.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112560627 112561418 - Sema3f protein_coding retained_intron MGP_C57BL6NJ_T0094879.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112560750 112561392 - Sema3f protein_coding retained_intron MGP_C57BL6NJ_T0094880.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112563840 112570247 - Sema3f protein_coding processed_transcript MGP_C57BL6NJ_T0094881.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112564307 112570175 - MGP_C57BL6NJ_P0094881 Sema3f protein_coding protein_coding MGP_C57BL6NJ_T0094882.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112564321 112567450 - Sema3f protein_coding retained_intron MGP_C57BL6NJ_T0094883.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112564891 112586851 - MGP_C57BL6NJ_P0094883 Sema3f protein_coding protein_coding MGP_C57BL6NJ_T0094884.1 MGP_C57BL6NJ_G0035761.1 mouse_genomes_project 9 112567218 112570236 - MGP_C57BL6NJ_P0094884 Sema3f protein_coding protein_coding MGP_C57BL6NJ_T0092003.1 MGP_C57BL6NJ_G0034962.1 mouse_genomes_project 9 20020281 20036309 - MGP_C57BL6NJ_P0092003 Ccdc151 protein_coding protein_coding MGP_C57BL6NJ_T0092004.1 MGP_C57BL6NJ_G0034962.1 mouse_genomes_project 9 20020281 20036309 - MGP_C57BL6NJ_P0092004 Ccdc151 protein_coding protein_coding MGP_C57BL6NJ_T0095591.1 MGP_C57BL6NJ_G0035876.1 mouse_genomes_project 9 119269175 119318530 + MGP_C57BL6NJ_P0095591 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091617.1 MGP_C57BL6NJ_G0034809.1 mouse_genomes_project 9 3264115 3265635 - MGP_C57BL6NJ_P0091617 Ddi1 protein_coding protein_coding MGP_C57BL6NJ_T0005630.1 MGP_C57BL6NJ_G0004756.1 mouse_genomes_project 9 71195137 71210383 - Gm15511 antisense antisense MGP_C57BL6NJ_T0093840.1 MGP_C57BL6NJ_G0035550.1 mouse_genomes_project 9 80769832 80787193 + MGP_C57BL6NJ_P0093840 Gsta4 protein_coding protein_coding MGP_C57BL6NJ_T0011306.1 MGP_C57BL6NJ_G0009391.1 mouse_genomes_project 9 18941738 18941816 - Mir1900 miRNA miRNA MGP_C57BL6NJ_T0094449.1 MGP_C57BL6NJ_G0035687.1 mouse_genomes_project 9 107706344 107723222 - MGP_C57BL6NJ_P0094449 Srprb protein_coding protein_coding MGP_C57BL6NJ_T0094450.1 MGP_C57BL6NJ_G0035687.1 mouse_genomes_project 9 107707402 107723214 - Srprb protein_coding retained_intron MGP_C57BL6NJ_T0094452.1 MGP_C57BL6NJ_G0035687.1 mouse_genomes_project 9 107709072 107710991 - Srprb protein_coding processed_transcript MGP_C57BL6NJ_T0092383.1 MGP_C57BL6NJ_G0035123.1 mouse_genomes_project 9 38560553 38561516 - MGP_C57BL6NJ_P0092383 Olfr945 protein_coding protein_coding MGP_C57BL6NJ_T0091938.1 MGP_C57BL6NJ_G0034939.1 mouse_genomes_project 9 19239392 19257185 - MGP_C57BL6NJ_P0091938 Ap1m2 protein_coding protein_coding MGP_C57BL6NJ_T0091939.1 MGP_C57BL6NJ_G0034939.1 mouse_genomes_project 9 19239392 19257185 - MGP_C57BL6NJ_P0091939 Ap1m2 protein_coding protein_coding MGP_C57BL6NJ_T0095820.1 MGP_C57BL6NJ_G0035953.1 mouse_genomes_project 9 128285352 128299337 + MGP_C57BL6NJ_P0095820 Ackr2 protein_coding protein_coding MGP_C57BL6NJ_T0100722.1 MGP_C57BL6NJ_G0038768.1 mouse_genomes_project 9 72468528 72468627 + Gm23588 snRNA snRNA MGP_C57BL6NJ_T0009539.1 MGP_C57BL6NJ_G0007659.1 mouse_genomes_project 9 123832621 123840680 + Gm26614 lincRNA lincRNA MGP_C57BL6NJ_T0093017.1 MGP_C57BL6NJ_G0035343.1 mouse_genomes_project 9 57342239 57409660 - MGP_C57BL6NJ_P0093017 Lingo1 protein_coding protein_coding MGP_C57BL6NJ_T0093018.1 MGP_C57BL6NJ_G0035343.1 mouse_genomes_project 9 57342852 57359393 - MGP_C57BL6NJ_P0093018 Lingo1 protein_coding protein_coding MGP_C57BL6NJ_T0093019.1 MGP_C57BL6NJ_G0035343.1 mouse_genomes_project 9 57342869 57371407 - MGP_C57BL6NJ_P0093019 Lingo1 protein_coding protein_coding MGP_C57BL6NJ_T0005704.1 MGP_C57BL6NJ_G0004808.1 mouse_genomes_project 9 112888264 112892563 - 4930535L15Rik antisense antisense MGP_C57BL6NJ_T0102018.1 MGP_C57BL6NJ_G0040064.1 mouse_genomes_project 9 70067523 70067653 + Gm22382 snoRNA snoRNA MGP_C57BL6NJ_T0092241.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35742136 35766668 - MGP_C57BL6NJ_P0092241 Chek1 protein_coding protein_coding MGP_C57BL6NJ_T0092242.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35742136 35766952 - MGP_C57BL6NJ_P0092242 Chek1 protein_coding protein_coding MGP_C57BL6NJ_T0092243.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35743094 35766879 - MGP_C57BL6NJ_P0092243 Chek1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092244.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35743811 35766162 - MGP_C57BL6NJ_P0092244 Chek1 protein_coding protein_coding MGP_C57BL6NJ_T0092245.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35743811 35766162 - MGP_C57BL6NJ_P0092245 Chek1 protein_coding protein_coding MGP_C57BL6NJ_T0092246.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35747390 35758721 - Chek1 protein_coding retained_intron MGP_C57BL6NJ_T0092247.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35758624 35767359 - Chek1 protein_coding processed_transcript MGP_C57BL6NJ_T0092248.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35759578 35766864 - Chek1 protein_coding retained_intron MGP_C57BL6NJ_T0092249.1 MGP_C57BL6NJ_G0035046.1 mouse_genomes_project 9 35759837 35766745 - MGP_C57BL6NJ_P0092249 Chek1 protein_coding protein_coding MGP_C57BL6NJ_T0093228.1 MGP_C57BL6NJ_G0035405.1 mouse_genomes_project 9 61896606 61914342 - MGP_C57BL6NJ_P0093228 Gm9869 protein_coding protein_coding MGP_C57BL6NJ_T0092339.1 MGP_C57BL6NJ_G0035085.1 mouse_genomes_project 9 37543043 37544111 + MGP_C57BL6NJ_P0092339 Olfr25 protein_coding protein_coding MGP_C57BL6NJ_T0002584.1 MGP_C57BL6NJ_G0002471.1 mouse_genomes_project 9 107184984 107187808 - TEC TEC MGP_C57BL6NJ_T0092516.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839579 43841522 + MGP_C57BL6NJ_P0092516 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092517.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839588 43841520 + MGP_C57BL6NJ_P0092517 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092518.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839608 43841519 + MGP_C57BL6NJ_P0092518 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092519.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839643 43840828 + MGP_C57BL6NJ_P0092519 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092520.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839648 43841519 + MGP_C57BL6NJ_P0092520 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092521.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839655 43840242 + MGP_C57BL6NJ_P0092521 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092522.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839709 43841107 + MGP_C57BL6NJ_P0092522 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092523.1 MGP_C57BL6NJ_G0035185.1 mouse_genomes_project 9 43839849 43840879 + MGP_C57BL6NJ_P0092523 C1qtnf5 protein_coding protein_coding MGP_C57BL6NJ_T0092295.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36520473 36524906 - Robo3 protein_coding retained_intron MGP_C57BL6NJ_T0092296.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36520849 36528645 - Robo3 protein_coding retained_intron MGP_C57BL6NJ_T0092297.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36520849 36552126 - MGP_C57BL6NJ_P0092297 Robo3 protein_coding protein_coding MGP_C57BL6NJ_T0092298.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36520849 36536463 - MGP_C57BL6NJ_P0092298 Robo3 protein_coding protein_coding MGP_C57BL6NJ_T0092299.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36520966 36536463 - Robo3 protein_coding retained_intron MGP_C57BL6NJ_T0092300.1 MGP_C57BL6NJ_G0035056.1 mouse_genomes_project 9 36523443 36524833 - Robo3 protein_coding retained_intron MGP_C57BL6NJ_T0002611.1 MGP_C57BL6NJ_G0002498.1 mouse_genomes_project 9 115569058 115572441 - TEC TEC MGP_C57BL6NJ_T0094462.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107775446 107813738 - MGP_C57BL6NJ_P0094462 1300017J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0094463.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107775447 107781667 - 1300017J02Rik protein_coding retained_intron MGP_C57BL6NJ_T0094464.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107775549 107813665 - MGP_C57BL6NJ_P0094464 1300017J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0094465.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107776762 107791139 - MGP_C57BL6NJ_P0094465 1300017J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0094466.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107795706 107813738 - 1300017J02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0094467.1 MGP_C57BL6NJ_G0035690.1 mouse_genomes_project 9 107807994 107836091 - MGP_C57BL6NJ_P0094467 1300017J02Rik protein_coding protein_coding MGP_C57BL6NJ_T0100712.1 MGP_C57BL6NJ_G0038758.1 mouse_genomes_project 9 64338254 64338412 + Gm24526 snRNA snRNA MGP_C57BL6NJ_T0102333.1 MGP_C57BL6NJ_G0040288.1 mouse_genomes_project 9 114966475 114971262 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102334.1 MGP_C57BL6NJ_G0040288.1 mouse_genomes_project 9 114968708 114971266 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0092871.1 MGP_C57BL6NJ_G0035291.1 mouse_genomes_project 9 51543635 51571139 + MGP_C57BL6NJ_P0092871 Pou2af1 protein_coding protein_coding MGP_C57BL6NJ_T0094182.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99613042 99667620 - MGP_C57BL6NJ_P0094182 Trpc1 protein_coding protein_coding MGP_C57BL6NJ_T0094183.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99614587 99667620 - MGP_C57BL6NJ_P0094183 Trpc1 protein_coding protein_coding MGP_C57BL6NJ_T0094184.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99614587 99667620 - MGP_C57BL6NJ_P0094184 Trpc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094185.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99614587 99667620 - MGP_C57BL6NJ_P0094185 Trpc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094186.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99628402 99631510 - Trpc1 protein_coding retained_intron MGP_C57BL6NJ_T0094187.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99634424 99645131 - MGP_C57BL6NJ_P0094187 Trpc1 protein_coding protein_coding MGP_C57BL6NJ_T0094188.1 MGP_C57BL6NJ_G0035631.1 mouse_genomes_project 9 99666299 99667637 - Trpc1 protein_coding retained_intron MGP_C57BL6NJ_T0100688.1 MGP_C57BL6NJ_G0038734.1 mouse_genomes_project 9 10615139 10615246 + Gm26189 snRNA snRNA MGP_C57BL6NJ_T0016608.1 MGP_C57BL6NJ_G0014653.1 mouse_genomes_project 9 104249870 104250696 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009541.1 MGP_C57BL6NJ_G0007661.1 mouse_genomes_project 9 124388353 124390356 - Platr11 lincRNA lincRNA MGP_C57BL6NJ_T0102035.1 MGP_C57BL6NJ_G0040081.1 mouse_genomes_project 9 101525443 101525570 - Gm25607 snoRNA snoRNA MGP_C57BL6NJ_T0093147.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494166 59568965 + MGP_C57BL6NJ_P0093147 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093148.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494218 59570525 + MGP_C57BL6NJ_P0093148 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093149.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494300 59558268 + MGP_C57BL6NJ_P0093149 Nptn protein_coding non_stop_decay MGP_C57BL6NJ_T0093150.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494332 59570525 + MGP_C57BL6NJ_P0093150 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093151.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494333 59561394 + MGP_C57BL6NJ_P0093151 Nptn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093152.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494333 59568965 + MGP_C57BL6NJ_P0093152 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093153.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494362 59568965 + MGP_C57BL6NJ_P0093153 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093154.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494367 59569609 + MGP_C57BL6NJ_P0093154 Nptn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093155.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59494370 59561256 + Nptn protein_coding processed_transcript MGP_C57BL6NJ_T0093156.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59545485 59575602 + MGP_C57BL6NJ_P0093156 Nptn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093157.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59545486 59572855 + MGP_C57BL6NJ_P0093157 Nptn protein_coding protein_coding MGP_C57BL6NJ_T0093158.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59567845 59569704 + Nptn protein_coding retained_intron MGP_C57BL6NJ_T0093159.1 MGP_C57BL6NJ_G0035385.1 mouse_genomes_project 9 59569622 59570465 + Nptn protein_coding processed_transcript MGP_C57BL6NJ_T0019027.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812611 91814223 - processed_transcript lincRNA MGP_C57BL6NJ_T0019028.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812613 91814184 - processed_transcript lincRNA MGP_C57BL6NJ_T0019029.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812616 91907741 - processed_transcript retained_intron MGP_C57BL6NJ_T0019030.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812618 91813259 - processed_transcript lincRNA MGP_C57BL6NJ_T0019031.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812933 91814182 - processed_transcript retained_intron MGP_C57BL6NJ_T0019032.1 MGP_C57BL6NJ_G0016145.1 mouse_genomes_project 9 91812994 91814166 - processed_transcript retained_intron MGP_C57BL6NJ_T0091836.1 MGP_C57BL6NJ_G0034902.1 mouse_genomes_project 9 17980523 17991720 + MGP_C57BL6NJ_P0091836 Olfr869 protein_coding protein_coding MGP_C57BL6NJ_T0009439.1 MGP_C57BL6NJ_G0007584.1 mouse_genomes_project 9 58836724 58847550 + Gm17322 lincRNA lincRNA MGP_C57BL6NJ_T0092450.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278175 40287719 + MGP_C57BL6NJ_P0092450 protein_coding protein_coding MGP_C57BL6NJ_T0092451.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278426 40287719 + MGP_C57BL6NJ_P0092451 protein_coding protein_coding MGP_C57BL6NJ_T0092452.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278467 40287718 + protein_coding retained_intron MGP_C57BL6NJ_T0092453.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278470 40286112 + protein_coding processed_transcript MGP_C57BL6NJ_T0092454.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278478 40282816 + protein_coding retained_intron MGP_C57BL6NJ_T0092455.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278480 40279690 + protein_coding retained_intron MGP_C57BL6NJ_T0092456.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278493 40287719 + MGP_C57BL6NJ_P0092456 protein_coding protein_coding MGP_C57BL6NJ_T0092457.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40278652 40279753 + MGP_C57BL6NJ_P0092457 protein_coding protein_coding MGP_C57BL6NJ_T0092458.1 MGP_C57BL6NJ_G0035164.1 mouse_genomes_project 9 40279533 40280104 + protein_coding retained_intron MGP_C57BL6NJ_T0016619.1 MGP_C57BL6NJ_G0014664.1 mouse_genomes_project 9 108451578 108451972 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093610.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73880143 74155261 - MGP_C57BL6NJ_P0093610 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093611.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73881709 73936439 - Tcf12 protein_coding retained_intron MGP_C57BL6NJ_T0093612.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73881725 74155235 - MGP_C57BL6NJ_P0093612 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093613.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73881730 73936749 - MGP_C57BL6NJ_P0093613 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093614.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73881734 74155221 - MGP_C57BL6NJ_P0093614 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093615.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73882180 74155065 - MGP_C57BL6NJ_P0093615 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093616.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73882969 74155285 - MGP_C57BL6NJ_P0093616 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093617.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73887348 73936442 - MGP_C57BL6NJ_P0093617 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093618.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73887351 74155226 - MGP_C57BL6NJ_P0093618 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093619.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73896038 74154616 - MGP_C57BL6NJ_P0093619 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093620.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73908847 73925335 - Tcf12 protein_coding processed_transcript MGP_C57BL6NJ_T0093621.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73916612 74153166 - MGP_C57BL6NJ_P0093621 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093622.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73916612 73936338 - MGP_C57BL6NJ_P0093622 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093623.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73923355 74040434 - MGP_C57BL6NJ_P0093623 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093624.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73923745 74040432 - MGP_C57BL6NJ_P0093624 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093625.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73924366 74155186 - MGP_C57BL6NJ_P0093625 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093626.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73924387 74155014 - MGP_C57BL6NJ_P0093626 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093627.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73925060 73963034 - MGP_C57BL6NJ_P0093627 Tcf12 protein_coding protein_coding MGP_C57BL6NJ_T0093628.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73925838 74155206 - MGP_C57BL6NJ_P0093628 Tcf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093629.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 73983991 74155261 - Tcf12 protein_coding retained_intron MGP_C57BL6NJ_T0093630.1 MGP_C57BL6NJ_G0035504.1 mouse_genomes_project 9 74149580 74153923 - Tcf12 protein_coding retained_intron MGP_C57BL6NJ_T0100745.1 MGP_C57BL6NJ_G0038791.1 mouse_genomes_project 9 110382521 110382608 - Gm22720 snRNA snRNA MGP_C57BL6NJ_T0009461.1 MGP_C57BL6NJ_G0007601.1 mouse_genomes_project 9 75334212 75417678 + Gm27211 lincRNA lincRNA MGP_C57BL6NJ_T0094682.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111271755 111277699 + Rrp9 protein_coding processed_transcript MGP_C57BL6NJ_T0094683.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111273061 111281250 + MGP_C57BL6NJ_P0094683 Rrp9 protein_coding protein_coding MGP_C57BL6NJ_T0094684.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111273110 111281242 + Rrp9 protein_coding retained_intron MGP_C57BL6NJ_T0094685.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111273122 111273782 + Rrp9 protein_coding retained_intron MGP_C57BL6NJ_T0094686.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111276595 111277475 + Rrp9 protein_coding retained_intron MGP_C57BL6NJ_T0094687.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111279679 111281248 + MGP_C57BL6NJ_P0094687 Rrp9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094688.1 MGP_C57BL6NJ_G0035728.1 mouse_genomes_project 9 111280289 111281250 + Rrp9 protein_coding retained_intron MGP_C57BL6NJ_T0091917.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19095159 19147194 + MGP_C57BL6NJ_P0091917 Pde4a protein_coding protein_coding MGP_C57BL6NJ_T0091918.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19113064 19145573 + Pde4a protein_coding retained_intron MGP_C57BL6NJ_T0091919.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19115549 19124949 + Pde4a protein_coding retained_intron MGP_C57BL6NJ_T0091920.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19115551 19145573 + MGP_C57BL6NJ_P0091920 Pde4a protein_coding protein_coding MGP_C57BL6NJ_T0091921.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19123647 19127396 + Pde4a protein_coding retained_intron MGP_C57BL6NJ_T0091922.1 MGP_C57BL6NJ_G0034933.1 mouse_genomes_project 9 19130632 19145573 + MGP_C57BL6NJ_P0091922 Pde4a protein_coding protein_coding MGP_C57BL6NJ_T0091637.1 MGP_C57BL6NJ_G0034816.1 mouse_genomes_project 9 4494168 4508563 + MGP_C57BL6NJ_P0091637 protein_coding protein_coding MGP_C57BL6NJ_T0002580.1 MGP_C57BL6NJ_G0002467.1 mouse_genomes_project 9 106436440 106437488 + TEC TEC MGP_C57BL6NJ_T0091787.1 MGP_C57BL6NJ_G0034865.1 mouse_genomes_project 9 15893467 15915251 + MGP_C57BL6NJ_P0091787 Chordc1 protein_coding protein_coding MGP_C57BL6NJ_T0005653.1 MGP_C57BL6NJ_G0004773.1 mouse_genomes_project 9 98548996 98555612 - Gm16262 antisense antisense MGP_C57BL6NJ_T0095585.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119172593 119231064 - MGP_C57BL6NJ_P0095585 Pdcd6ip protein_coding protein_coding MGP_C57BL6NJ_T0095586.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119175321 119231049 - MGP_C57BL6NJ_P0095586 Pdcd6ip protein_coding protein_coding MGP_C57BL6NJ_T0095587.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119176419 119178144 - Pdcd6ip protein_coding retained_intron MGP_C57BL6NJ_T0095588.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119180484 119183264 - Pdcd6ip protein_coding retained_intron MGP_C57BL6NJ_T0095589.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119196097 119207069 - Pdcd6ip protein_coding processed_transcript MGP_C57BL6NJ_T0095590.1 MGP_C57BL6NJ_G0035875.1 mouse_genomes_project 9 119209166 119220176 - Pdcd6ip protein_coding retained_intron MGP_C57BL6NJ_T0091861.1 MGP_C57BL6NJ_G0034911.1 mouse_genomes_project 9 18451905 18465728 + MGP_C57BL6NJ_P0091861 Zfp846 protein_coding protein_coding MGP_C57BL6NJ_T0091862.1 MGP_C57BL6NJ_G0034911.1 mouse_genomes_project 9 18452105 18465730 + MGP_C57BL6NJ_P0091862 Zfp846 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091863.1 MGP_C57BL6NJ_G0034911.1 mouse_genomes_project 9 18458426 18465007 + MGP_C57BL6NJ_P0091863 Zfp846 protein_coding protein_coding MGP_C57BL6NJ_T0094423.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107205286 107209333 + MGP_C57BL6NJ_P0094423 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094424.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107205416 107222023 + MGP_C57BL6NJ_P0094424 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094425.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107205903 107209345 + MGP_C57BL6NJ_P0094425 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094426.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107206282 107222028 + MGP_C57BL6NJ_P0094426 Amotl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094427.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107207043 107209004 + MGP_C57BL6NJ_P0094427 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094428.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107207084 107209012 + MGP_C57BL6NJ_P0094428 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094429.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107207099 107208824 + MGP_C57BL6NJ_P0094429 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094430.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107207118 107222031 + MGP_C57BL6NJ_P0094430 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094431.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107207182 107217113 + MGP_C57BL6NJ_P0094431 Amotl2 protein_coding protein_coding MGP_C57BL6NJ_T0094432.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107210927 107216936 + Amotl2 protein_coding processed_transcript MGP_C57BL6NJ_T0094433.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107211145 107222028 + Amotl2 protein_coding retained_intron MGP_C57BL6NJ_T0094434.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107216940 107220951 + Amotl2 protein_coding processed_transcript MGP_C57BL6NJ_T0094435.1 MGP_C57BL6NJ_G0035682.1 mouse_genomes_project 9 107219340 107220937 + Amotl2 protein_coding retained_intron MGP_C57BL6NJ_T0093446.1 MGP_C57BL6NJ_G0035465.1 mouse_genomes_project 9 67717467 67734710 + MGP_C57BL6NJ_P0093446 Fam96a protein_coding protein_coding MGP_C57BL6NJ_T0091809.1 MGP_C57BL6NJ_G0034875.1 mouse_genomes_project 9 16540012 16540978 + MGP_C57BL6NJ_P0091809 Olfr829 protein_coding protein_coding MGP_C57BL6NJ_T0091942.1 MGP_C57BL6NJ_G0034941.1 mouse_genomes_project 9 19335540 19369737 + MGP_C57BL6NJ_P0091942 Ilf3 protein_coding protein_coding MGP_C57BL6NJ_T0091943.1 MGP_C57BL6NJ_G0034941.1 mouse_genomes_project 9 19335540 19373295 + MGP_C57BL6NJ_P0091943 Ilf3 protein_coding protein_coding MGP_C57BL6NJ_T0091944.1 MGP_C57BL6NJ_G0034941.1 mouse_genomes_project 9 19370811 19373304 + MGP_C57BL6NJ_P0091944 Ilf3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095673.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125112141 125132113 + Vill protein_coding retained_intron MGP_C57BL6NJ_T0095674.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125112141 125117419 + Vill protein_coding retained_intron MGP_C57BL6NJ_T0095675.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125112141 125132107 + MGP_C57BL6NJ_P0095675 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095676.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125112165 125131914 + MGP_C57BL6NJ_P0095676 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095677.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125112228 125117790 + MGP_C57BL6NJ_P0095677 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095678.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125122854 125131914 + MGP_C57BL6NJ_P0095678 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095679.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125122860 125131925 + MGP_C57BL6NJ_P0095679 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095680.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125122861 125129474 + MGP_C57BL6NJ_P0095680 Vill protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095681.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125122864 125126224 + MGP_C57BL6NJ_P0095681 Vill protein_coding protein_coding MGP_C57BL6NJ_T0095682.1 MGP_C57BL6NJ_G0035908.1 mouse_genomes_project 9 125122888 125124750 + Vill protein_coding processed_transcript MGP_C57BL6NJ_T0019033.1 MGP_C57BL6NJ_G0016146.1 mouse_genomes_project 9 99535658 99536952 - Gm16127 processed_transcript processed_transcript MGP_C57BL6NJ_T0094636.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111223239 111228578 - MGP_C57BL6NJ_P0094636 Acy1 protein_coding protein_coding MGP_C57BL6NJ_T0094637.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111223242 111228436 - Acy1 protein_coding retained_intron MGP_C57BL6NJ_T0094638.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111223248 111224973 - Acy1 protein_coding retained_intron MGP_C57BL6NJ_T0094639.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111224978 111226640 - Acy1 protein_coding retained_intron MGP_C57BL6NJ_T0094640.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111225223 111228461 - MGP_C57BL6NJ_P0094640 Acy1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094641.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111225354 111228578 - MGP_C57BL6NJ_P0094641 Acy1 protein_coding protein_coding MGP_C57BL6NJ_T0094642.1 MGP_C57BL6NJ_G0035722.1 mouse_genomes_project 9 111227155 111228446 - MGP_C57BL6NJ_P0094642 Acy1 protein_coding protein_coding MGP_C57BL6NJ_T0100723.1 MGP_C57BL6NJ_G0038769.1 mouse_genomes_project 9 72472926 72473033 - Gm23730 snRNA snRNA MGP_C57BL6NJ_T0005610.1 MGP_C57BL6NJ_G0004744.1 mouse_genomes_project 9 54805467 54832805 - Gldnos antisense antisense MGP_C57BL6NJ_T0009468.1 MGP_C57BL6NJ_G0007607.1 mouse_genomes_project 9 79875404 79910385 - 5730403I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0102038.1 MGP_C57BL6NJ_G0040084.1 mouse_genomes_project 9 105637907 105638034 + Gm24338 snoRNA snoRNA MGP_C57BL6NJ_T0092322.1 MGP_C57BL6NJ_G0035069.1 mouse_genomes_project 9 37026707 37027643 + MGP_C57BL6NJ_P0092322 Olfr877 protein_coding protein_coding MGP_C57BL6NJ_T0092573.1 MGP_C57BL6NJ_G0035204.1 mouse_genomes_project 9 44216755 44218807 - MGP_C57BL6NJ_P0092573 Upk2 protein_coding protein_coding MGP_C57BL6NJ_T0094716.1 MGP_C57BL6NJ_G0035737.1 mouse_genomes_project 9 111646417 111709490 + MGP_C57BL6NJ_P0094716 Vprbp protein_coding protein_coding MGP_C57BL6NJ_T0094717.1 MGP_C57BL6NJ_G0035737.1 mouse_genomes_project 9 111654798 111710452 + MGP_C57BL6NJ_P0094717 Vprbp protein_coding protein_coding MGP_C57BL6NJ_T0094719.1 MGP_C57BL6NJ_G0035737.1 mouse_genomes_project 9 111679232 111683159 + Vprbp protein_coding retained_intron MGP_C57BL6NJ_T0094721.1 MGP_C57BL6NJ_G0035737.1 mouse_genomes_project 9 111703753 111709656 + MGP_C57BL6NJ_P0094721 Vprbp protein_coding protein_coding MGP_C57BL6NJ_T0093794.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580492 79623099 - protein_coding retained_intron MGP_C57BL6NJ_T0093795.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580492 79840434 - MGP_C57BL6NJ_P0093795 protein_coding protein_coding MGP_C57BL6NJ_T0093796.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580492 79840441 - MGP_C57BL6NJ_P0093796 protein_coding protein_coding MGP_C57BL6NJ_T0093797.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580497 79840372 - MGP_C57BL6NJ_P0093797 protein_coding protein_coding MGP_C57BL6NJ_T0093798.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580497 79840364 - MGP_C57BL6NJ_P0093798 protein_coding protein_coding MGP_C57BL6NJ_T0093799.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580500 79739301 - MGP_C57BL6NJ_P0093799 protein_coding protein_coding MGP_C57BL6NJ_T0093800.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580500 79840487 - MGP_C57BL6NJ_P0093800 protein_coding protein_coding MGP_C57BL6NJ_T0093801.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580523 79622848 - MGP_C57BL6NJ_P0093801 protein_coding protein_coding MGP_C57BL6NJ_T0093802.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580721 79739347 - MGP_C57BL6NJ_P0093802 protein_coding protein_coding MGP_C57BL6NJ_T0093803.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79580802 79739428 - MGP_C57BL6NJ_P0093803 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093804.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79648664 79840432 - MGP_C57BL6NJ_P0093804 protein_coding protein_coding MGP_C57BL6NJ_T0093805.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79715044 79840422 - MGP_C57BL6NJ_P0093805 protein_coding protein_coding MGP_C57BL6NJ_T0093806.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79715047 79739310 - MGP_C57BL6NJ_P0093806 protein_coding protein_coding MGP_C57BL6NJ_T0093807.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79715075 79833198 - MGP_C57BL6NJ_P0093807 protein_coding protein_coding MGP_C57BL6NJ_T0093808.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79736663 79739606 - protein_coding retained_intron MGP_C57BL6NJ_T0093809.1 MGP_C57BL6NJ_G0035542.1 mouse_genomes_project 9 79839002 79846967 - protein_coding processed_transcript MGP_C57BL6NJ_T0092422.1 MGP_C57BL6NJ_G0035156.1 mouse_genomes_project 9 39552613 39553729 - MGP_C57BL6NJ_P0092422 Olfr985 protein_coding protein_coding MGP_C57BL6NJ_T0019047.1 MGP_C57BL6NJ_G0016151.1 mouse_genomes_project 9 107966382 108009680 + 5830418P13Rik processed_transcript antisense MGP_C57BL6NJ_T0019048.1 MGP_C57BL6NJ_G0016151.1 mouse_genomes_project 9 107967788 107968929 + 5830418P13Rik processed_transcript retained_intron MGP_C57BL6NJ_T0019049.1 MGP_C57BL6NJ_G0016151.1 mouse_genomes_project 9 107967812 107970433 + 5830418P13Rik processed_transcript antisense MGP_C57BL6NJ_T0094885.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112620420 112651036 - MGP_C57BL6NJ_P0094885 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094886.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112620544 112651021 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094887.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112620545 112640647 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094888.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112620549 112651020 - MGP_C57BL6NJ_P0094888 Rbm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094889.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112620549 112651027 - MGP_C57BL6NJ_P0094889 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094890.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112622013 112624336 - MGP_C57BL6NJ_P0094890 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094891.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112623382 112624284 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094892.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112624318 112630057 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094893.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112625243 112629946 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094894.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112626093 112650991 - MGP_C57BL6NJ_P0094894 Rbm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094895.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112626194 112631945 - MGP_C57BL6NJ_P0094895 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094896.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112630327 112631997 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094897.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112630534 112634113 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094898.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112631915 112634625 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094899.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112631944 112647637 - MGP_C57BL6NJ_P0094899 Rbm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094900.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112634117 112651012 - MGP_C57BL6NJ_P0094900 Rbm5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094901.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112634121 112637344 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094902.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112634145 112650535 - MGP_C57BL6NJ_P0094902 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094903.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112638527 112650999 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094904.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112640402 112650999 - MGP_C57BL6NJ_P0094904 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094905.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112640467 112650985 - MGP_C57BL6NJ_P0094905 Rbm5 protein_coding protein_coding MGP_C57BL6NJ_T0094906.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112645130 112651029 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094907.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112646644 112651026 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0094908.1 MGP_C57BL6NJ_G0035762.1 mouse_genomes_project 9 112649224 112650999 - Rbm5 protein_coding retained_intron MGP_C57BL6NJ_T0099534.1 MGP_C57BL6NJ_G0037585.1 mouse_genomes_project 9 104890874 104891322 - Gm28586 sense_intronic sense_intronic MGP_C57BL6NJ_T0102005.1 MGP_C57BL6NJ_G0040051.1 mouse_genomes_project 9 44155239 44155358 - Gm26306 snoRNA snoRNA MGP_C57BL6NJ_T0094969.1 MGP_C57BL6NJ_G0035773.1 mouse_genomes_project 9 112886497 112943939 + Gm20662 protein_coding retained_intron MGP_C57BL6NJ_T0094974.1 MGP_C57BL6NJ_G0035773.1 mouse_genomes_project 9 112888137 112929645 + MGP_C57BL6NJ_P0094974 Gm20662 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094975.1 MGP_C57BL6NJ_G0035773.1 mouse_genomes_project 9 112888175 112929637 + MGP_C57BL6NJ_P0094975 Gm20662 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016484.1 MGP_C57BL6NJ_G0014529.1 mouse_genomes_project 9 4755048 4757738 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092689.1 MGP_C57BL6NJ_G0035237.1 mouse_genomes_project 9 45812373 45818808 - MGP_C57BL6NJ_P0092689 Tagln protein_coding protein_coding MGP_C57BL6NJ_T0095497.1 MGP_C57BL6NJ_G0035864.1 mouse_genomes_project 9 116268060 116299177 + MGP_C57BL6NJ_P0095497 Lrrc2 protein_coding protein_coding MGP_C57BL6NJ_T0095498.1 MGP_C57BL6NJ_G0035864.1 mouse_genomes_project 9 116270301 116286641 + MGP_C57BL6NJ_P0095498 Lrrc2 protein_coding protein_coding MGP_C57BL6NJ_T0095499.1 MGP_C57BL6NJ_G0035864.1 mouse_genomes_project 9 116277336 116292690 + MGP_C57BL6NJ_P0095499 Lrrc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0016612.1 MGP_C57BL6NJ_G0014657.1 mouse_genomes_project 9 105700407 105700813 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019021.1 MGP_C57BL6NJ_G0016143.1 mouse_genomes_project 9 86118189 86119639 + Gm29054 processed_transcript TEC MGP_C57BL6NJ_T0019022.1 MGP_C57BL6NJ_G0016143.1 mouse_genomes_project 9 86118220 86119556 + Gm29054 processed_transcript antisense MGP_C57BL6NJ_T0099176.1 MGP_C57BL6NJ_G0037240.1 mouse_genomes_project 9 61059954 61060065 - Gm23668 rRNA rRNA MGP_C57BL6NJ_T0094038.1 MGP_C57BL6NJ_G0035596.1 mouse_genomes_project 9 90378209 90413185 + MGP_C57BL6NJ_P0094038 Mrap2 protein_coding protein_coding MGP_C57BL6NJ_T0094039.1 MGP_C57BL6NJ_G0035596.1 mouse_genomes_project 9 90378209 90413185 + MGP_C57BL6NJ_P0094039 Mrap2 protein_coding protein_coding MGP_C57BL6NJ_T0094040.1 MGP_C57BL6NJ_G0035596.1 mouse_genomes_project 9 90378246 90413185 + MGP_C57BL6NJ_P0094040 Mrap2 protein_coding protein_coding MGP_C57BL6NJ_T0100713.1 MGP_C57BL6NJ_G0038759.1 mouse_genomes_project 9 64452305 64452412 + Gm25064 snRNA snRNA MGP_C57BL6NJ_T0093168.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60361629 60462249 - MGP_C57BL6NJ_P0093168 Arih1 protein_coding protein_coding MGP_C57BL6NJ_T0093169.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60366484 60462253 - MGP_C57BL6NJ_P0093169 Arih1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093170.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60366665 60461982 - MGP_C57BL6NJ_P0093170 Arih1 protein_coding protein_coding MGP_C57BL6NJ_T0093171.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60368214 60379209 - MGP_C57BL6NJ_P0093171 Arih1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093172.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60368299 60379468 - Arih1 protein_coding retained_intron MGP_C57BL6NJ_T0093173.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60399152 60461691 - Arih1 protein_coding retained_intron MGP_C57BL6NJ_T0093174.1 MGP_C57BL6NJ_G0035391.1 mouse_genomes_project 9 60411768 60461718 - Arih1 protein_coding retained_intron MGP_C57BL6NJ_T0016489.1 MGP_C57BL6NJ_G0014534.1 mouse_genomes_project 9 19511384 19511743 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091777.1 MGP_C57BL6NJ_G0034861.1 mouse_genomes_project 9 12954625 13026417 - MGP_C57BL6NJ_P0091777 Ccdc67 protein_coding protein_coding MGP_C57BL6NJ_T0091778.1 MGP_C57BL6NJ_G0034861.1 mouse_genomes_project 9 12954631 13027725 - MGP_C57BL6NJ_P0091778 Ccdc67 protein_coding protein_coding MGP_C57BL6NJ_T0091779.1 MGP_C57BL6NJ_G0034861.1 mouse_genomes_project 9 12955317 13027695 - MGP_C57BL6NJ_P0091779 Ccdc67 protein_coding protein_coding MGP_C57BL6NJ_T0091780.1 MGP_C57BL6NJ_G0034861.1 mouse_genomes_project 9 12971398 12984273 - Ccdc67 protein_coding processed_transcript MGP_C57BL6NJ_T0091781.1 MGP_C57BL6NJ_G0034861.1 mouse_genomes_project 9 12980360 13027706 - MGP_C57BL6NJ_P0091781 Ccdc67 protein_coding protein_coding MGP_C57BL6NJ_T0092424.1 MGP_C57BL6NJ_G0035158.1 mouse_genomes_project 9 39620914 39621930 + MGP_C57BL6NJ_P0092424 Olfr986 protein_coding protein_coding MGP_C57BL6NJ_T0009452.1 MGP_C57BL6NJ_G0007593.1 mouse_genomes_project 9 70016851 70017223 + Gm28195 lincRNA lincRNA MGP_C57BL6NJ_T0091678.1 MGP_C57BL6NJ_G0034832.1 mouse_genomes_project 9 6081191 6349594 - MGP_C57BL6NJ_P0091678 Arhgap42 protein_coding protein_coding MGP_C57BL6NJ_T0091679.1 MGP_C57BL6NJ_G0034832.1 mouse_genomes_project 9 6081434 6349272 - MGP_C57BL6NJ_P0091679 Arhgap42 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091680.1 MGP_C57BL6NJ_G0034832.1 mouse_genomes_project 9 6098020 6349594 - Arhgap42 protein_coding retained_intron MGP_C57BL6NJ_T0091681.1 MGP_C57BL6NJ_G0034832.1 mouse_genomes_project 9 6250952 6349519 - MGP_C57BL6NJ_P0091681 Arhgap42 protein_coding protein_coding MGP_C57BL6NJ_T0011369.1 MGP_C57BL6NJ_G0009454.1 mouse_genomes_project 9 123967298 123967393 + Gm22008 miRNA miRNA MGP_C57BL6NJ_T0100685.1 MGP_C57BL6NJ_G0038731.1 mouse_genomes_project 9 186869 186973 + Gm23275 snRNA snRNA MGP_C57BL6NJ_T0100729.1 MGP_C57BL6NJ_G0038775.1 mouse_genomes_project 9 76595880 76595995 + Gm24141 snRNA snRNA MGP_C57BL6NJ_T0016605.1 MGP_C57BL6NJ_G0014650.1 mouse_genomes_project 9 103063770 103064623 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093274.1 MGP_C57BL6NJ_G0035414.1 mouse_genomes_project 9 63938754 64061300 + MGP_C57BL6NJ_P0093274 Itga11 protein_coding protein_coding MGP_C57BL6NJ_T0093275.1 MGP_C57BL6NJ_G0035414.1 mouse_genomes_project 9 63938788 64054427 + Itga11 protein_coding retained_intron MGP_C57BL6NJ_T0091911.1 MGP_C57BL6NJ_G0034928.1 mouse_genomes_project 9 18982093 18988200 - MGP_C57BL6NJ_P0091911 Zglp1 protein_coding protein_coding MGP_C57BL6NJ_T0091997.1 MGP_C57BL6NJ_G0034958.1 mouse_genomes_project 9 19961966 19977875 + MGP_C57BL6NJ_P0091997 Plppr2 protein_coding protein_coding MGP_C57BL6NJ_T0091998.1 MGP_C57BL6NJ_G0034958.1 mouse_genomes_project 9 19963375 19976981 + MGP_C57BL6NJ_P0091998 Plppr2 protein_coding protein_coding MGP_C57BL6NJ_T0012005.1 MGP_C57BL6NJ_G0010090.1 mouse_genomes_project 9 80754044 80754375 - Rn7sk misc_RNA misc_RNA MGP_C57BL6NJ_T0016520.1 MGP_C57BL6NJ_G0014565.1 mouse_genomes_project 9 67401805 67402322 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011308.1 MGP_C57BL6NJ_G0009393.1 mouse_genomes_project 9 19474536 19474606 - Mir199a-1 miRNA miRNA MGP_C57BL6NJ_T0011316.1 MGP_C57BL6NJ_G0009401.1 mouse_genomes_project 9 41083917 41084013 + Mirlet7a-2 miRNA miRNA MGP_C57BL6NJ_T0016490.1 MGP_C57BL6NJ_G0014535.1 mouse_genomes_project 9 20595628 20596141 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093256.1 MGP_C57BL6NJ_G0035411.1 mouse_genomes_project 9 63474085 63485719 - MGP_C57BL6NJ_P0093256 Spesp1 protein_coding protein_coding MGP_C57BL6NJ_T0093307.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65484097 65509347 + MGP_C57BL6NJ_P0093307 Lctl protein_coding protein_coding MGP_C57BL6NJ_T0093308.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65484122 65485086 + Lctl protein_coding retained_intron MGP_C57BL6NJ_T0093309.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65484179 65484962 + Lctl protein_coding processed_transcript MGP_C57BL6NJ_T0093310.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65484209 65509343 + MGP_C57BL6NJ_P0093310 Lctl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093311.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65488551 65509334 + MGP_C57BL6NJ_P0093311 Lctl protein_coding protein_coding MGP_C57BL6NJ_T0093312.1 MGP_C57BL6NJ_G0035426.1 mouse_genomes_project 9 65488995 65495826 + Lctl protein_coding retained_intron MGP_C57BL6NJ_T0091719.1 MGP_C57BL6NJ_G0034841.1 mouse_genomes_project 9 11579067 11628929 + MGP_C57BL6NJ_P0091719 Sesn3 protein_coding protein_coding MGP_C57BL6NJ_T0095620.1 MGP_C57BL6NJ_G0035895.1 mouse_genomes_project 9 120578816 120613142 - MGP_C57BL6NJ_P0095620 Gpd1l protein_coding protein_coding MGP_C57BL6NJ_T0095621.1 MGP_C57BL6NJ_G0035895.1 mouse_genomes_project 9 120582817 120613304 - MGP_C57BL6NJ_P0095621 Gpd1l protein_coding protein_coding MGP_C57BL6NJ_T0095622.1 MGP_C57BL6NJ_G0035895.1 mouse_genomes_project 9 120590455 120598830 - Gpd1l protein_coding processed_transcript MGP_C57BL6NJ_T0095858.1 MGP_C57BL6NJ_G0035970.1 mouse_genomes_project 9 129542535 129543628 + Tgm4 protein_coding processed_transcript MGP_C57BL6NJ_T0095859.1 MGP_C57BL6NJ_G0035970.1 mouse_genomes_project 9 129542537 129564350 + Tgm4 protein_coding processed_transcript MGP_C57BL6NJ_T0095860.1 MGP_C57BL6NJ_G0035970.1 mouse_genomes_project 9 129542537 129580431 + MGP_C57BL6NJ_P0095860 Tgm4 protein_coding protein_coding MGP_C57BL6NJ_T0095861.1 MGP_C57BL6NJ_G0035970.1 mouse_genomes_project 9 129548164 129561932 + Tgm4 protein_coding retained_intron MGP_C57BL6NJ_T0095289.1 MGP_C57BL6NJ_G0035821.1 mouse_genomes_project 9 114132771 114153757 - MGP_C57BL6NJ_P0095289 Fbxw21 protein_coding protein_coding MGP_C57BL6NJ_T0095290.1 MGP_C57BL6NJ_G0035821.1 mouse_genomes_project 9 114138312 114153756 - MGP_C57BL6NJ_P0095290 Fbxw21 protein_coding protein_coding MGP_C57BL6NJ_T0009546.1 MGP_C57BL6NJ_G0007666.1 mouse_genomes_project 9 128727604 128732830 - Gm26797 lincRNA lincRNA MGP_C57BL6NJ_T0094310.1 MGP_C57BL6NJ_G0035658.1 mouse_genomes_project 9 103225421 103260317 - MGP_C57BL6NJ_P0094310 Gm1123 protein_coding protein_coding MGP_C57BL6NJ_T0092639.1 MGP_C57BL6NJ_G0035220.1 mouse_genomes_project 9 44860953 44874229 + MGP_C57BL6NJ_P0092639 Mpzl2 protein_coding protein_coding MGP_C57BL6NJ_T0002560.1 MGP_C57BL6NJ_G0002447.1 mouse_genomes_project 9 99974220 99976447 + TEC TEC MGP_C57BL6NJ_T0093370.1 MGP_C57BL6NJ_G0035444.1 mouse_genomes_project 9 66759203 66774670 + MGP_C57BL6NJ_P0093370 protein_coding protein_coding MGP_C57BL6NJ_T0093371.1 MGP_C57BL6NJ_G0035444.1 mouse_genomes_project 9 66759846 66774600 + MGP_C57BL6NJ_P0093371 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092765.1 MGP_C57BL6NJ_G0035262.1 mouse_genomes_project 9 49282311 49286209 + Tmprss5 protein_coding retained_intron MGP_C57BL6NJ_T0092766.1 MGP_C57BL6NJ_G0035262.1 mouse_genomes_project 9 49282311 49297100 + MGP_C57BL6NJ_P0092766 Tmprss5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092767.1 MGP_C57BL6NJ_G0035262.1 mouse_genomes_project 9 49282404 49296506 + MGP_C57BL6NJ_P0092767 Tmprss5 protein_coding protein_coding MGP_C57BL6NJ_T0092768.1 MGP_C57BL6NJ_G0035262.1 mouse_genomes_project 9 49282404 49296506 + MGP_C57BL6NJ_P0092768 Tmprss5 protein_coding protein_coding MGP_C57BL6NJ_T0092769.1 MGP_C57BL6NJ_G0035262.1 mouse_genomes_project 9 49288516 49297100 + MGP_C57BL6NJ_P0092769 Tmprss5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0005689.1 MGP_C57BL6NJ_G0004798.1 mouse_genomes_project 9 111722473 111724762 + 4930524O07Rik antisense antisense MGP_C57BL6NJ_T0005690.1 MGP_C57BL6NJ_G0004798.1 mouse_genomes_project 9 111723097 111724760 + 4930524O07Rik antisense antisense MGP_C57BL6NJ_T0005691.1 MGP_C57BL6NJ_G0004798.1 mouse_genomes_project 9 111723539 111726109 + 4930524O07Rik antisense antisense MGP_C57BL6NJ_T0092501.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43797306 43826758 + MGP_C57BL6NJ_P0092501 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092502.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43797363 43825086 + MGP_C57BL6NJ_P0092502 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092503.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43799728 43825125 + MGP_C57BL6NJ_P0092503 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092504.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43802473 43806200 + MGP_C57BL6NJ_P0092504 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092505.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43816111 43825083 + MGP_C57BL6NJ_P0092505 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092506.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43816112 43825609 + MGP_C57BL6NJ_P0092506 Usp2 protein_coding protein_coding MGP_C57BL6NJ_T0092507.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43818346 43823657 + MGP_C57BL6NJ_P0092507 Usp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092508.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43823624 43825496 + Usp2 protein_coding processed_transcript MGP_C57BL6NJ_T0092509.1 MGP_C57BL6NJ_G0035183.1 mouse_genomes_project 9 43823830 43825090 + Usp2 protein_coding processed_transcript MGP_C57BL6NJ_T0094089.1 MGP_C57BL6NJ_G0035611.1 mouse_genomes_project 9 93175896 93189133 - MGP_C57BL6NJ_P0094089 Ankrd34c protein_coding protein_coding MGP_C57BL6NJ_T0094090.1 MGP_C57BL6NJ_G0035611.1 mouse_genomes_project 9 93179126 93189103 - MGP_C57BL6NJ_P0094090 Ankrd34c protein_coding protein_coding MGP_C57BL6NJ_T0095722.1 MGP_C57BL6NJ_G0035923.1 mouse_genomes_project 9 125902400 125980869 - MGP_C57BL6NJ_P0095722 Scn11a protein_coding protein_coding MGP_C57BL6NJ_T0009516.1 MGP_C57BL6NJ_G0007645.1 mouse_genomes_project 9 108948107 108972191 + Gm28548 lincRNA lincRNA MGP_C57BL6NJ_T0094602.1 MGP_C57BL6NJ_G0035713.1 mouse_genomes_project 9 110897721 110902833 - MGP_C57BL6NJ_P0094602 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094603.1 MGP_C57BL6NJ_G0035713.1 mouse_genomes_project 9 110899774 110900598 - MGP_C57BL6NJ_P0094603 protein_coding protein_coding MGP_C57BL6NJ_T0094604.1 MGP_C57BL6NJ_G0035713.1 mouse_genomes_project 9 110900070 110900591 - MGP_C57BL6NJ_P0094604 protein_coding protein_coding MGP_C57BL6NJ_T0012015.1 MGP_C57BL6NJ_G0010100.1 mouse_genomes_project 9 124262478 124262785 + Gm22198 misc_RNA misc_RNA MGP_C57BL6NJ_T0016598.1 MGP_C57BL6NJ_G0014643.1 mouse_genomes_project 9 100590277 100590482 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009428.1 MGP_C57BL6NJ_G0007575.1 mouse_genomes_project 9 45263863 45277913 - 4833428L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0005632.1 MGP_C57BL6NJ_G0004758.1 mouse_genomes_project 9 71894696 71896265 - Gm28731 antisense antisense MGP_C57BL6NJ_T0094643.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230309 111237922 - MGP_C57BL6NJ_P0094643 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094644.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230312 111237922 - MGP_C57BL6NJ_P0094644 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094645.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230316 111237807 - MGP_C57BL6NJ_P0094645 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094646.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230368 111237687 - MGP_C57BL6NJ_P0094646 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094647.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230640 111235102 - MGP_C57BL6NJ_P0094647 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094648.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111230960 111237864 - MGP_C57BL6NJ_P0094648 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094649.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111231040 111237761 - MGP_C57BL6NJ_P0094649 Abhd14a protein_coding protein_coding MGP_C57BL6NJ_T0094650.1 MGP_C57BL6NJ_G0035723.1 mouse_genomes_project 9 111233639 111234396 - Abhd14a protein_coding retained_intron MGP_C57BL6NJ_T0016518.1 MGP_C57BL6NJ_G0014563.1 mouse_genomes_project 9 64767742 64768652 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011303.1 MGP_C57BL6NJ_G0009388.1 mouse_genomes_project 9 15696759 15696870 - Gm44498 miRNA miRNA MGP_C57BL6NJ_T0016596.1 MGP_C57BL6NJ_G0014641.1 mouse_genomes_project 9 100240639 100240880 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092571.1 MGP_C57BL6NJ_G0035202.1 mouse_genomes_project 9 44169522 44178439 - MGP_C57BL6NJ_P0092571 Ccdc84 protein_coding protein_coding MGP_C57BL6NJ_T0094481.1 MGP_C57BL6NJ_G0035693.1 mouse_genomes_project 9 107967571 108030729 - MGP_C57BL6NJ_P0094481 Bfsp2 protein_coding protein_coding MGP_C57BL6NJ_T0094482.1 MGP_C57BL6NJ_G0035693.1 mouse_genomes_project 9 107967575 107991736 - Bfsp2 protein_coding processed_transcript MGP_C57BL6NJ_T0102010.1 MGP_C57BL6NJ_G0040056.1 mouse_genomes_project 9 61458027 61458150 + Gm22099 snoRNA snoRNA MGP_C57BL6NJ_T0093166.1 MGP_C57BL6NJ_G0035389.1 mouse_genomes_project 9 60240866 60270024 + MGP_C57BL6NJ_P0093166 Adpgk protein_coding protein_coding MGP_C57BL6NJ_T0102053.1 MGP_C57BL6NJ_G0040099.1 mouse_genomes_project 9 126319449 126319598 + Snora62 snoRNA snoRNA MGP_C57BL6NJ_T0091618.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 3912225 4194044 - MGP_C57BL6NJ_P0091618 Dync2h1 protein_coding protein_coding MGP_C57BL6NJ_T0091619.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 3912225 4181663 - MGP_C57BL6NJ_P0091619 Dync2h1 protein_coding protein_coding MGP_C57BL6NJ_T0091620.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 3913026 4181574 - MGP_C57BL6NJ_P0091620 Dync2h1 protein_coding protein_coding MGP_C57BL6NJ_T0091621.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 3913187 4181643 - MGP_C57BL6NJ_P0091621 Dync2h1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091622.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 3926717 3944250 - Dync2h1 protein_coding retained_intron MGP_C57BL6NJ_T0091623.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 4016110 4107761 - MGP_C57BL6NJ_P0091623 Dync2h1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091624.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 4143494 4181661 - Dync2h1 protein_coding retained_intron MGP_C57BL6NJ_T0091625.1 MGP_C57BL6NJ_G0034810.1 mouse_genomes_project 9 4149962 4181582 - MGP_C57BL6NJ_P0091625 Dync2h1 protein_coding protein_coding MGP_C57BL6NJ_T0091839.1 MGP_C57BL6NJ_G0034905.1 mouse_genomes_project 9 18166515 18167577 + MGP_C57BL6NJ_P0091839 Olfr873 protein_coding protein_coding MGP_C57BL6NJ_T0092528.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43879993 43976971 - MGP_C57BL6NJ_P0092528 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092529.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43879994 43976911 - MGP_C57BL6NJ_P0092529 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092530.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43879999 43884193 - Cbl protein_coding processed_transcript MGP_C57BL6NJ_T0092531.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43887199 43976918 - MGP_C57BL6NJ_P0092531 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092532.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43889163 43976906 - MGP_C57BL6NJ_P0092532 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092533.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43893287 43894487 - MGP_C57BL6NJ_P0092533 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092534.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43893846 43894460 - Cbl protein_coding retained_intron MGP_C57BL6NJ_T0092535.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43894006 43897286 - Cbl protein_coding retained_intron MGP_C57BL6NJ_T0092536.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43900364 43904208 - MGP_C57BL6NJ_P0092536 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0092537.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43909108 43927433 - Cbl protein_coding processed_transcript MGP_C57BL6NJ_T0092538.1 MGP_C57BL6NJ_G0035187.1 mouse_genomes_project 9 43913468 43976466 - MGP_C57BL6NJ_P0092538 Cbl protein_coding protein_coding MGP_C57BL6NJ_T0009462.1 MGP_C57BL6NJ_G0007602.1 mouse_genomes_project 9 76818311 76820886 - lincRNA lincRNA MGP_C57BL6NJ_T0093267.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63644328 63779100 - MGP_C57BL6NJ_P0093267 Coro2b protein_coding protein_coding MGP_C57BL6NJ_T0093268.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63650413 63654701 - MGP_C57BL6NJ_P0093268 Coro2b protein_coding protein_coding MGP_C57BL6NJ_T0093269.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63654635 63751740 - MGP_C57BL6NJ_P0093269 Coro2b protein_coding protein_coding MGP_C57BL6NJ_T0093270.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63654962 63655950 - Coro2b protein_coding retained_intron MGP_C57BL6NJ_T0093271.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63656033 63659206 - MGP_C57BL6NJ_P0093271 Coro2b protein_coding protein_coding MGP_C57BL6NJ_T0093272.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63659193 63761520 - MGP_C57BL6NJ_P0093272 Coro2b protein_coding protein_coding MGP_C57BL6NJ_T0093273.1 MGP_C57BL6NJ_G0035413.1 mouse_genomes_project 9 63680947 63779016 - Coro2b protein_coding retained_intron MGP_C57BL6NJ_T0011310.1 MGP_C57BL6NJ_G0009395.1 mouse_genomes_project 9 19823837 19823897 - Mir7083 miRNA miRNA MGP_C57BL6NJ_T0093074.1 MGP_C57BL6NJ_G0035364.1 mouse_genomes_project 9 58400679 58406942 - MGP_C57BL6NJ_P0093074 Cplx3 protein_coding protein_coding MGP_C57BL6NJ_T0092647.1 MGP_C57BL6NJ_G0035224.1 mouse_genomes_project 9 44937738 44952797 + MGP_C57BL6NJ_P0092647 Scn2b protein_coding protein_coding MGP_C57BL6NJ_T0092648.1 MGP_C57BL6NJ_G0035224.1 mouse_genomes_project 9 44937743 44952795 + MGP_C57BL6NJ_P0092648 Scn2b protein_coding protein_coding MGP_C57BL6NJ_T0094712.1 MGP_C57BL6NJ_G0035736.1 mouse_genomes_project 9 111496059 111607789 - MGP_C57BL6NJ_P0094712 Rad54l2 protein_coding protein_coding MGP_C57BL6NJ_T0094713.1 MGP_C57BL6NJ_G0035736.1 mouse_genomes_project 9 111496767 111501271 - MGP_C57BL6NJ_P0094713 Rad54l2 protein_coding protein_coding MGP_C57BL6NJ_T0094714.1 MGP_C57BL6NJ_G0035736.1 mouse_genomes_project 9 111533745 111534715 - MGP_C57BL6NJ_P0094714 Rad54l2 protein_coding protein_coding MGP_C57BL6NJ_T0094715.1 MGP_C57BL6NJ_G0035736.1 mouse_genomes_project 9 111605353 111607771 - Rad54l2 protein_coding retained_intron MGP_C57BL6NJ_T0018995.1 MGP_C57BL6NJ_G0016131.1 mouse_genomes_project 9 43839635 43841295 - Gm20444 processed_transcript processed_transcript MGP_C57BL6NJ_T0095914.1 MGP_C57BL6NJ_G0035987.1 mouse_genomes_project 9 130548626 130550086 - MGP_C57BL6NJ_P0095914 Ccr1l1 protein_coding protein_coding MGP_C57BL6NJ_T0092354.1 MGP_C57BL6NJ_G0035100.1 mouse_genomes_project 9 37925608 37926541 - MGP_C57BL6NJ_P0092354 Olfr916 protein_coding protein_coding MGP_C57BL6NJ_T0002532.1 MGP_C57BL6NJ_G0002420.1 mouse_genomes_project 9 79792492 79793501 - TEC TEC MGP_C57BL6NJ_T0011309.1 MGP_C57BL6NJ_G0009394.1 mouse_genomes_project 9 19607242 19607375 - Mir1946b miRNA miRNA MGP_C57BL6NJ_T0005652.1 MGP_C57BL6NJ_G0004772.1 mouse_genomes_project 9 89903691 89909480 + A330041J22Rik antisense antisense MGP_C57BL6NJ_T0092510.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43834036 43841522 + MGP_C57BL6NJ_P0092510 Mfrp protein_coding protein_coding MGP_C57BL6NJ_T0092511.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43834045 43838827 + MGP_C57BL6NJ_P0092511 Mfrp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092512.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43834061 43841519 + MGP_C57BL6NJ_P0092512 Mfrp protein_coding protein_coding MGP_C57BL6NJ_T0092513.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43834077 43841519 + MGP_C57BL6NJ_P0092513 Mfrp protein_coding protein_coding MGP_C57BL6NJ_T0092514.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43834095 43835605 + MGP_C57BL6NJ_P0092514 Mfrp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092515.1 MGP_C57BL6NJ_G0035184.1 mouse_genomes_project 9 43837483 43838729 + MGP_C57BL6NJ_P0092515 Mfrp protein_coding protein_coding MGP_C57BL6NJ_T0100721.1 MGP_C57BL6NJ_G0038767.1 mouse_genomes_project 9 70262511 70262618 - Gm22169 snRNA snRNA MGP_C57BL6NJ_T0100689.1 MGP_C57BL6NJ_G0038735.1 mouse_genomes_project 9 12586270 12586425 - Gm22658 snRNA snRNA MGP_C57BL6NJ_T0094740.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112106567 112147552 - MGP_C57BL6NJ_P0094740 Mapkapk3 protein_coding protein_coding MGP_C57BL6NJ_T0094741.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112106575 112147422 - Mapkapk3 protein_coding retained_intron MGP_C57BL6NJ_T0094742.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112107684 112108933 - Mapkapk3 protein_coding retained_intron MGP_C57BL6NJ_T0094743.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112107823 112147019 - MGP_C57BL6NJ_P0094743 Mapkapk3 protein_coding protein_coding MGP_C57BL6NJ_T0094744.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112110412 112113565 - Mapkapk3 protein_coding processed_transcript MGP_C57BL6NJ_T0094745.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112111183 112147454 - Mapkapk3 protein_coding retained_intron MGP_C57BL6NJ_T0094746.1 MGP_C57BL6NJ_G0035741.1 mouse_genomes_project 9 112115330 112136788 - MGP_C57BL6NJ_P0094746 Mapkapk3 protein_coding protein_coding MGP_C57BL6NJ_T0092963.1 MGP_C57BL6NJ_G0035328.1 mouse_genomes_project 9 55591237 55606799 - MGP_C57BL6NJ_P0092963 Chrna3 protein_coding protein_coding MGP_C57BL6NJ_T0095083.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113454177 113454823 + MGP_C57BL6NJ_P0095083 Lamb2 protein_coding protein_coding MGP_C57BL6NJ_T0095084.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113454298 113464972 + MGP_C57BL6NJ_P0095084 Lamb2 protein_coding protein_coding MGP_C57BL6NJ_T0095085.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113454313 113455095 + MGP_C57BL6NJ_P0095085 Lamb2 protein_coding protein_coding MGP_C57BL6NJ_T0095086.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113454319 113455028 + MGP_C57BL6NJ_P0095086 Lamb2 protein_coding protein_coding MGP_C57BL6NJ_T0095087.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113454322 113454626 + Lamb2 protein_coding retained_intron MGP_C57BL6NJ_T0095088.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113462259 113463113 + Lamb2 protein_coding retained_intron MGP_C57BL6NJ_T0095089.1 MGP_C57BL6NJ_G0035793.1 mouse_genomes_project 9 113463318 113463974 + Lamb2 protein_coding retained_intron MGP_C57BL6NJ_T0005711.1 MGP_C57BL6NJ_G0004815.1 mouse_genomes_project 9 116914184 116914798 + Gm43236 antisense antisense MGP_C57BL6NJ_T0091832.1 MGP_C57BL6NJ_G0034898.1 mouse_genomes_project 9 17761557 17763134 - MGP_C57BL6NJ_P0091832 protein_coding protein_coding MGP_C57BL6NJ_T0018968.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34033217 34047234 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018969.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34033256 34034581 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018970.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34033725 34039952 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018971.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34034292 34042702 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018972.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34034376 34040380 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018973.1 MGP_C57BL6NJ_G0016126.1 mouse_genomes_project 9 34034506 34043209 + 4930581F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0095612.1 MGP_C57BL6NJ_G0035888.1 mouse_genomes_project 9 120139192 120206341 - MGP_C57BL6NJ_P0095612 Trim71 protein_coding protein_coding MGP_C57BL6NJ_T0005666.1 MGP_C57BL6NJ_G0004779.1 mouse_genomes_project 9 99972697 99986272 - Gm28085 antisense antisense MGP_C57BL6NJ_T0095493.1 MGP_C57BL6NJ_G0035863.1 mouse_genomes_project 9 116256209 116262674 - MGP_C57BL6NJ_P0095493 Tdgf1 protein_coding protein_coding MGP_C57BL6NJ_T0095494.1 MGP_C57BL6NJ_G0035863.1 mouse_genomes_project 9 116256849 116262610 - MGP_C57BL6NJ_P0095494 Tdgf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095495.1 MGP_C57BL6NJ_G0035863.1 mouse_genomes_project 9 116258871 116262591 - MGP_C57BL6NJ_P0095495 Tdgf1 protein_coding protein_coding MGP_C57BL6NJ_T0095496.1 MGP_C57BL6NJ_G0035863.1 mouse_genomes_project 9 116259157 116261387 - MGP_C57BL6NJ_P0095496 Tdgf1 protein_coding protein_coding MGP_C57BL6NJ_T0002550.1 MGP_C57BL6NJ_G0002437.1 mouse_genomes_project 9 93641654 93648065 - TEC TEC MGP_C57BL6NJ_T0012017.1 MGP_C57BL6NJ_G0010102.1 mouse_genomes_project 9 127535965 127536211 + Gm22987 misc_RNA misc_RNA MGP_C57BL6NJ_T0095062.1 MGP_C57BL6NJ_G0035789.1 mouse_genomes_project 9 113360100 113385309 - MGP_C57BL6NJ_P0095062 Ccdc36 protein_coding protein_coding MGP_C57BL6NJ_T0093389.1 MGP_C57BL6NJ_G0035454.1 mouse_genomes_project 9 67080797 67114275 - MGP_C57BL6NJ_P0093389 Plekho2 protein_coding protein_coding MGP_C57BL6NJ_T0098911.1 MGP_C57BL6NJ_G0036975.1 mouse_genomes_project 9 16847108 16848057 + pseudogene pseudogene MGP_C57BL6NJ_T0093248.1 MGP_C57BL6NJ_G0035409.1 mouse_genomes_project 9 63127267 63211926 - Paqr5 protein_coding processed_transcript MGP_C57BL6NJ_T0093249.1 MGP_C57BL6NJ_G0035409.1 mouse_genomes_project 9 63127524 63211981 - MGP_C57BL6NJ_P0093249 Paqr5 protein_coding protein_coding MGP_C57BL6NJ_T0093250.1 MGP_C57BL6NJ_G0035409.1 mouse_genomes_project 9 63129832 63153846 - MGP_C57BL6NJ_P0093250 Paqr5 protein_coding protein_coding MGP_C57BL6NJ_T0002549.1 MGP_C57BL6NJ_G0002436.1 mouse_genomes_project 9 92678871 92682742 - TEC TEC MGP_C57BL6NJ_T0094288.1 MGP_C57BL6NJ_G0035648.1 mouse_genomes_project 9 102565787 102592295 + MGP_C57BL6NJ_P0094288 Rbp1 protein_coding protein_coding MGP_C57BL6NJ_T0093521.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244355 71284127 + MGP_C57BL6NJ_P0093521 Ice2 protein_coding protein_coding MGP_C57BL6NJ_T0093522.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244372 71283075 + Ice2 protein_coding retained_intron MGP_C57BL6NJ_T0093523.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244376 71257073 + MGP_C57BL6NJ_P0093523 Ice2 protein_coding protein_coding MGP_C57BL6NJ_T0093524.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244382 71257447 + MGP_C57BL6NJ_P0093524 Ice2 protein_coding protein_coding MGP_C57BL6NJ_T0093525.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244384 71257085 + MGP_C57BL6NJ_P0093525 Ice2 protein_coding protein_coding MGP_C57BL6NJ_T0093526.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244386 71257704 + MGP_C57BL6NJ_P0093526 Ice2 protein_coding protein_coding MGP_C57BL6NJ_T0093527.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71244406 71261207 + MGP_C57BL6NJ_P0093527 Ice2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093528.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71245097 71256932 + Ice2 protein_coding retained_intron MGP_C57BL6NJ_T0093529.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71267733 71276710 + Ice2 protein_coding processed_transcript MGP_C57BL6NJ_T0093530.1 MGP_C57BL6NJ_G0035483.1 mouse_genomes_project 9 71267891 71278029 + Ice2 protein_coding retained_intron MGP_C57BL6NJ_T0091816.1 MGP_C57BL6NJ_G0034882.1 mouse_genomes_project 9 16964396 16965503 - MGP_C57BL6NJ_P0091816 Olfr843 protein_coding protein_coding MGP_C57BL6NJ_T0102328.1 MGP_C57BL6NJ_G0040286.1 mouse_genomes_project 9 81054759 81058152 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102329.1 MGP_C57BL6NJ_G0040286.1 mouse_genomes_project 9 81056647 81058726 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102330.1 MGP_C57BL6NJ_G0040286.1 mouse_genomes_project 9 81057198 81059559 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0094510.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108735461 108845163 - MGP_C57BL6NJ_P0094510 Dnajc13 protein_coding protein_coding MGP_C57BL6NJ_T0094511.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108736231 108739517 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094512.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108736352 108742860 - Dnajc13 protein_coding processed_transcript MGP_C57BL6NJ_T0094513.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108736446 108743118 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094514.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108736496 108829060 - MGP_C57BL6NJ_P0094514 Dnajc13 protein_coding protein_coding MGP_C57BL6NJ_T0094515.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108742849 108749437 - MGP_C57BL6NJ_P0094515 Dnajc13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094516.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108748749 108751729 - MGP_C57BL6NJ_P0094516 Dnajc13 protein_coding protein_coding MGP_C57BL6NJ_T0094517.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108751438 108754675 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094518.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108769433 108774335 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094519.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108776467 108788983 - MGP_C57BL6NJ_P0094519 Dnajc13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094520.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108779882 108787883 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094521.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108783422 108790379 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094522.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108810587 108811227 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0094523.1 MGP_C57BL6NJ_G0035700.1 mouse_genomes_project 9 108819754 108845136 - Dnajc13 protein_coding retained_intron MGP_C57BL6NJ_T0016574.1 MGP_C57BL6NJ_G0014619.1 mouse_genomes_project 9 92427303 92427594 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005721.1 MGP_C57BL6NJ_G0004822.1 mouse_genomes_project 9 127935819 127952804 + Lyzl4os antisense antisense MGP_C57BL6NJ_T0005722.1 MGP_C57BL6NJ_G0004822.1 mouse_genomes_project 9 127935842 127967357 + Lyzl4os antisense antisense MGP_C57BL6NJ_T0093511.1 MGP_C57BL6NJ_G0035479.1 mouse_genomes_project 9 69521804 69525000 + MGP_C57BL6NJ_P0093511 C2cd4b protein_coding protein_coding MGP_C57BL6NJ_T0016592.1 MGP_C57BL6NJ_G0014637.1 mouse_genomes_project 9 99280854 99282714 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009404.1 MGP_C57BL6NJ_G0007555.1 mouse_genomes_project 9 23432131 23455797 + Gm29642 lincRNA lincRNA MGP_C57BL6NJ_T0091688.1 MGP_C57BL6NJ_G0034835.1 mouse_genomes_project 9 10583508 10624494 + MGP_C57BL6NJ_P0091688 Ccdc82 protein_coding protein_coding MGP_C57BL6NJ_T0091689.1 MGP_C57BL6NJ_G0034835.1 mouse_genomes_project 9 10583521 10590079 + MGP_C57BL6NJ_P0091689 Ccdc82 protein_coding protein_coding MGP_C57BL6NJ_T0002531.1 MGP_C57BL6NJ_G0002419.1 mouse_genomes_project 9 79199567 79202838 + TEC TEC MGP_C57BL6NJ_T0016545.1 MGP_C57BL6NJ_G0014590.1 mouse_genomes_project 9 79463119 79463357 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094339.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103841040 103849743 + MGP_C57BL6NJ_P0094339 Dbr1 protein_coding protein_coding MGP_C57BL6NJ_T0094340.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103841069 103847683 + MGP_C57BL6NJ_P0094340 Dbr1 protein_coding protein_coding MGP_C57BL6NJ_T0094341.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103841321 103847291 + MGP_C57BL6NJ_P0094341 Dbr1 protein_coding protein_coding MGP_C57BL6NJ_T0094342.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103841349 103847300 + MGP_C57BL6NJ_P0094342 Dbr1 protein_coding protein_coding MGP_C57BL6NJ_T0094343.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103845443 103849080 + MGP_C57BL6NJ_P0094343 Dbr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094344.1 MGP_C57BL6NJ_G0035665.1 mouse_genomes_project 9 103845538 103847931 + MGP_C57BL6NJ_P0094344 Dbr1 protein_coding protein_coding MGP_C57BL6NJ_T0092663.1 MGP_C57BL6NJ_G0035230.1 mouse_genomes_project 9 45213223 45243395 + MGP_C57BL6NJ_P0092663 Fxyd6 protein_coding protein_coding MGP_C57BL6NJ_T0091864.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18488642 18506624 - MGP_C57BL6NJ_P0091864 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091865.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18488754 18509058 - Fbxl12 protein_coding processed_transcript MGP_C57BL6NJ_T0091866.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502150 18509066 - MGP_C57BL6NJ_P0091866 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091867.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502187 18503742 - MGP_C57BL6NJ_P0091867 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091868.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502187 18509058 - MGP_C57BL6NJ_P0091868 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091869.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502188 18509066 - MGP_C57BL6NJ_P0091869 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091870.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502190 18509078 - MGP_C57BL6NJ_P0091870 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091871.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18502190 18507117 - MGP_C57BL6NJ_P0091871 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091872.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18503202 18509069 - MGP_C57BL6NJ_P0091872 Fbxl12 protein_coding protein_coding MGP_C57BL6NJ_T0091873.1 MGP_C57BL6NJ_G0034912.1 mouse_genomes_project 9 18505873 18509053 - Fbxl12 protein_coding retained_intron MGP_C57BL6NJ_T0016512.1 MGP_C57BL6NJ_G0014557.1 mouse_genomes_project 9 55909412 55910505 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092761.1 MGP_C57BL6NJ_G0035259.1 mouse_genomes_project 9 49094599 49127041 - MGP_C57BL6NJ_P0092761 Htr3b protein_coding protein_coding MGP_C57BL6NJ_T0093474.1 MGP_C57BL6NJ_G0035471.1 mouse_genomes_project 9 68460416 68489285 - MGP_C57BL6NJ_P0093474 Aph1b protein_coding protein_coding MGP_C57BL6NJ_T0093475.1 MGP_C57BL6NJ_G0035471.1 mouse_genomes_project 9 68460423 68489231 - MGP_C57BL6NJ_P0093475 Aph1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093476.1 MGP_C57BL6NJ_G0035471.1 mouse_genomes_project 9 68464407 68489171 - MGP_C57BL6NJ_P0093476 Aph1b protein_coding protein_coding MGP_C57BL6NJ_T0002511.1 MGP_C57BL6NJ_G0002399.1 mouse_genomes_project 9 74082554 74085232 - TEC TEC MGP_C57BL6NJ_T0095183.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793829 113818594 + MGP_C57BL6NJ_P0095183 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095184.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793829 113808023 + MGP_C57BL6NJ_P0095184 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095185.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793855 113808868 + Ip6k2 protein_coding retained_intron MGP_C57BL6NJ_T0095186.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793898 113807011 + Ip6k2 protein_coding retained_intron MGP_C57BL6NJ_T0095187.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793898 113807726 + MGP_C57BL6NJ_P0095187 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095188.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113793898 113807379 + MGP_C57BL6NJ_P0095188 Ip6k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095189.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113806027 113818599 + MGP_C57BL6NJ_P0095189 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095190.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113806027 113809303 + MGP_C57BL6NJ_P0095190 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095191.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113806097 113807476 + MGP_C57BL6NJ_P0095191 Ip6k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095192.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113806164 113808028 + MGP_C57BL6NJ_P0095192 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095193.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113806385 113807727 + MGP_C57BL6NJ_P0095193 Ip6k2 protein_coding protein_coding MGP_C57BL6NJ_T0095194.1 MGP_C57BL6NJ_G0035805.1 mouse_genomes_project 9 113808220 113809406 + Ip6k2 protein_coding retained_intron MGP_C57BL6NJ_T0094651.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238031 111241853 + MGP_C57BL6NJ_P0094651 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094652.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238035 111241878 + MGP_C57BL6NJ_P0094652 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094653.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238447 111242356 + MGP_C57BL6NJ_P0094653 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094654.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238883 111243166 + MGP_C57BL6NJ_P0094654 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094655.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238918 111242324 + MGP_C57BL6NJ_P0094655 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094656.1 MGP_C57BL6NJ_G0035724.1 mouse_genomes_project 9 111238957 111242296 + MGP_C57BL6NJ_P0094656 Abhd14b protein_coding protein_coding MGP_C57BL6NJ_T0094369.1 MGP_C57BL6NJ_G0035672.1 mouse_genomes_project 9 104912327 104931222 - MGP_C57BL6NJ_P0094369 Slc35g2 protein_coding protein_coding MGP_C57BL6NJ_T0094370.1 MGP_C57BL6NJ_G0035672.1 mouse_genomes_project 9 104912329 104913055 - Slc35g2 protein_coding processed_transcript MGP_C57BL6NJ_T0092751.1 MGP_C57BL6NJ_G0035254.1 mouse_genomes_project 9 48615667 48622447 - MGP_C57BL6NJ_P0092751 Rbm7 protein_coding protein_coding MGP_C57BL6NJ_T0091599.1 MGP_C57BL6NJ_G0034804.1 mouse_genomes_project 9 1252723 1683823 - MGP_C57BL6NJ_P0091599 Gria4 protein_coding protein_coding MGP_C57BL6NJ_T0091600.1 MGP_C57BL6NJ_G0034804.1 mouse_genomes_project 9 1252723 1683823 - MGP_C57BL6NJ_P0091600 Gria4 protein_coding protein_coding MGP_C57BL6NJ_T0091601.1 MGP_C57BL6NJ_G0034804.1 mouse_genomes_project 9 1319489 1683823 - MGP_C57BL6NJ_P0091601 Gria4 protein_coding protein_coding MGP_C57BL6NJ_T0019042.1 MGP_C57BL6NJ_G0016149.1 mouse_genomes_project 9 103155497 103163060 - Foxl2os processed_transcript lincRNA MGP_C57BL6NJ_T0019043.1 MGP_C57BL6NJ_G0016149.1 mouse_genomes_project 9 103161550 103162045 - Foxl2os processed_transcript retained_intron MGP_C57BL6NJ_T0019044.1 MGP_C57BL6NJ_G0016149.1 mouse_genomes_project 9 103161632 103162559 - Foxl2os processed_transcript retained_intron MGP_C57BL6NJ_T0002574.1 MGP_C57BL6NJ_G0002461.1 mouse_genomes_project 9 105527355 105529389 + TEC TEC MGP_C57BL6NJ_T0002503.1 MGP_C57BL6NJ_G0002391.1 mouse_genomes_project 9 59462859 59463890 + TEC TEC MGP_C57BL6NJ_T0005629.1 MGP_C57BL6NJ_G0004755.1 mouse_genomes_project 9 68533285 68534121 + Gm17098 antisense antisense MGP_C57BL6NJ_T0091690.1 MGP_C57BL6NJ_G0034836.1 mouse_genomes_project 9 10672285 10673661 + MGP_C57BL6NJ_P0091690 Phxr4 protein_coding protein_coding MGP_C57BL6NJ_T0100707.1 MGP_C57BL6NJ_G0038753.1 mouse_genomes_project 9 47555927 47556034 - Gm22286 snRNA snRNA MGP_C57BL6NJ_T0100687.1 MGP_C57BL6NJ_G0038733.1 mouse_genomes_project 9 6413542 6413604 + Gm22815 snRNA snRNA MGP_C57BL6NJ_T0094822.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112454622 112459984 + MGP_C57BL6NJ_P0094822 Ifrd2 protein_coding protein_coding MGP_C57BL6NJ_T0094823.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112454706 112459984 + Ifrd2 protein_coding retained_intron MGP_C57BL6NJ_T0094824.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112454737 112458675 + MGP_C57BL6NJ_P0094824 Ifrd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094825.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112457416 112458288 + Ifrd2 protein_coding retained_intron MGP_C57BL6NJ_T0094826.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112458087 112459654 + MGP_C57BL6NJ_P0094826 Ifrd2 protein_coding protein_coding MGP_C57BL6NJ_T0094827.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112459030 112459700 + MGP_C57BL6NJ_P0094827 Ifrd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094828.1 MGP_C57BL6NJ_G0035756.1 mouse_genomes_project 9 112459572 112460331 + Ifrd2 protein_coding processed_transcript MGP_C57BL6NJ_T0009543.1 MGP_C57BL6NJ_G0007663.1 mouse_genomes_project 9 125547112 125551665 - 4930516B21Rik lincRNA lincRNA MGP_C57BL6NJ_T0092488.1 MGP_C57BL6NJ_G0035173.1 mouse_genomes_project 9 42134243 42579055 - MGP_C57BL6NJ_P0092488 Grik4 protein_coding protein_coding MGP_C57BL6NJ_T0092489.1 MGP_C57BL6NJ_G0035173.1 mouse_genomes_project 9 42136464 42440943 - MGP_C57BL6NJ_P0092489 Grik4 protein_coding protein_coding MGP_C57BL6NJ_T0093372.1 MGP_C57BL6NJ_G0035445.1 mouse_genomes_project 9 66789489 66827288 + MGP_C57BL6NJ_P0093372 Clpx protein_coding protein_coding MGP_C57BL6NJ_T0093373.1 MGP_C57BL6NJ_G0035445.1 mouse_genomes_project 9 66789524 66827289 + MGP_C57BL6NJ_P0093373 Clpx protein_coding protein_coding MGP_C57BL6NJ_T0093374.1 MGP_C57BL6NJ_G0035445.1 mouse_genomes_project 9 66789561 66804458 + Clpx protein_coding retained_intron MGP_C57BL6NJ_T0093375.1 MGP_C57BL6NJ_G0035445.1 mouse_genomes_project 9 66805379 66813641 + MGP_C57BL6NJ_P0093375 Clpx protein_coding protein_coding MGP_C57BL6NJ_T0093304.1 MGP_C57BL6NJ_G0035425.1 mouse_genomes_project 9 65300431 65372673 - MGP_C57BL6NJ_P0093304 Smad6 protein_coding protein_coding MGP_C57BL6NJ_T0093305.1 MGP_C57BL6NJ_G0035425.1 mouse_genomes_project 9 65301364 65367601 - Smad6 protein_coding processed_transcript MGP_C57BL6NJ_T0093306.1 MGP_C57BL6NJ_G0035425.1 mouse_genomes_project 9 65372373 65372646 - MGP_C57BL6NJ_P0093306 Smad6 protein_coding protein_coding MGP_C57BL6NJ_T0093975.1 MGP_C57BL6NJ_G0035584.1 mouse_genomes_project 9 88408991 88415895 - MGP_C57BL6NJ_P0093975 Fam46a protein_coding protein_coding MGP_C57BL6NJ_T0093976.1 MGP_C57BL6NJ_G0035584.1 mouse_genomes_project 9 88408991 88415671 - MGP_C57BL6NJ_P0093976 Fam46a protein_coding protein_coding MGP_C57BL6NJ_T0095035.1 MGP_C57BL6NJ_G0035783.1 mouse_genomes_project 9 113225599 113232752 + Amt protein_coding processed_transcript MGP_C57BL6NJ_T0095036.1 MGP_C57BL6NJ_G0035783.1 mouse_genomes_project 9 113225616 113233483 + MGP_C57BL6NJ_P0095036 Amt protein_coding protein_coding MGP_C57BL6NJ_T0095037.1 MGP_C57BL6NJ_G0035783.1 mouse_genomes_project 9 113225656 113226278 + Amt protein_coding retained_intron MGP_C57BL6NJ_T0095038.1 MGP_C57BL6NJ_G0035783.1 mouse_genomes_project 9 113225668 113228190 + Amt protein_coding retained_intron MGP_C57BL6NJ_T0019007.1 MGP_C57BL6NJ_G0016137.1 mouse_genomes_project 9 74454315 74462825 + Gm27230 processed_transcript lincRNA MGP_C57BL6NJ_T0019008.1 MGP_C57BL6NJ_G0016137.1 mouse_genomes_project 9 74454321 74461042 + Gm27230 processed_transcript lincRNA MGP_C57BL6NJ_T0019009.1 MGP_C57BL6NJ_G0016137.1 mouse_genomes_project 9 74461733 74462407 + Gm27230 processed_transcript retained_intron MGP_C57BL6NJ_T0102020.1 MGP_C57BL6NJ_G0040066.1 mouse_genomes_project 9 72067721 72067852 - Gm24257 snoRNA snoRNA MGP_C57BL6NJ_T0005656.1 MGP_C57BL6NJ_G0004776.1 mouse_genomes_project 9 99781333 99783433 - 1700065D16Rik antisense antisense MGP_C57BL6NJ_T0005657.1 MGP_C57BL6NJ_G0004776.1 mouse_genomes_project 9 99781335 99784238 - 1700065D16Rik antisense antisense MGP_C57BL6NJ_T0005658.1 MGP_C57BL6NJ_G0004776.1 mouse_genomes_project 9 99781335 99783787 - 1700065D16Rik antisense antisense MGP_C57BL6NJ_T0005659.1 MGP_C57BL6NJ_G0004776.1 mouse_genomes_project 9 99781336 99783787 - 1700065D16Rik antisense antisense MGP_C57BL6NJ_T0005660.1 MGP_C57BL6NJ_G0004776.1 mouse_genomes_project 9 99781467 99784236 - 1700065D16Rik antisense antisense MGP_C57BL6NJ_T0101980.1 MGP_C57BL6NJ_G0040026.1 mouse_genomes_project 9 12697052 12697183 + Gm24455 snoRNA snoRNA MGP_C57BL6NJ_T0092319.1 MGP_C57BL6NJ_G0035066.1 mouse_genomes_project 9 36909749 36911583 + MGP_C57BL6NJ_P0092319 Olfr874 protein_coding protein_coding MGP_C57BL6NJ_T0005600.1 MGP_C57BL6NJ_G0004739.1 mouse_genomes_project 9 46154402 46155311 - Gm10680 antisense antisense MGP_C57BL6NJ_T0005572.1 MGP_C57BL6NJ_G0004719.1 mouse_genomes_project 9 6345897 6371305 + Gm16833 antisense antisense MGP_C57BL6NJ_T0005573.1 MGP_C57BL6NJ_G0004719.1 mouse_genomes_project 9 6371104 6371305 + Gm16833 antisense antisense MGP_C57BL6NJ_T0009475.1 MGP_C57BL6NJ_G0007614.1 mouse_genomes_project 9 86208428 86225944 - Gm27216 lincRNA lincRNA MGP_C57BL6NJ_T0009476.1 MGP_C57BL6NJ_G0007614.1 mouse_genomes_project 9 86208438 86226462 - Gm27216 lincRNA lincRNA MGP_C57BL6NJ_T0009477.1 MGP_C57BL6NJ_G0007614.1 mouse_genomes_project 9 86208455 86226409 - Gm27216 lincRNA lincRNA MGP_C57BL6NJ_T0093968.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 86938251 87150045 + MGP_C57BL6NJ_P0093968 Bckdhb protein_coding protein_coding MGP_C57BL6NJ_T0093969.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 86938276 87092773 + MGP_C57BL6NJ_P0093969 Bckdhb protein_coding protein_coding MGP_C57BL6NJ_T0093970.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 86960291 87150046 + MGP_C57BL6NJ_P0093970 Bckdhb protein_coding protein_coding MGP_C57BL6NJ_T0093971.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 87054648 87150004 + Bckdhb protein_coding processed_transcript MGP_C57BL6NJ_T0093972.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 87066520 87150045 + Bckdhb protein_coding processed_transcript MGP_C57BL6NJ_T0093973.1 MGP_C57BL6NJ_G0035582.1 mouse_genomes_project 9 87132791 87150046 + Bckdhb protein_coding processed_transcript MGP_C57BL6NJ_T0102019.1 MGP_C57BL6NJ_G0040065.1 mouse_genomes_project 9 70305837 70305910 + Gm22962 snoRNA snoRNA MGP_C57BL6NJ_T0092346.1 MGP_C57BL6NJ_G0035092.1 mouse_genomes_project 9 37715701 37716638 + MGP_C57BL6NJ_P0092346 Olfr905 protein_coding protein_coding MGP_C57BL6NJ_T0095460.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115962647 115990179 - MGP_C57BL6NJ_P0095460 Pth1r protein_coding protein_coding MGP_C57BL6NJ_T0095461.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115962650 115983855 - MGP_C57BL6NJ_P0095461 Pth1r protein_coding protein_coding MGP_C57BL6NJ_T0095462.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115962698 115984229 - MGP_C57BL6NJ_P0095462 Pth1r protein_coding protein_coding MGP_C57BL6NJ_T0095463.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115962810 115983810 - MGP_C57BL6NJ_P0095463 Pth1r protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095464.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115969153 115990113 - MGP_C57BL6NJ_P0095464 Pth1r protein_coding protein_coding MGP_C57BL6NJ_T0095465.1 MGP_C57BL6NJ_G0035852.1 mouse_genomes_project 9 115973286 115990202 - MGP_C57BL6NJ_P0095465 Pth1r protein_coding protein_coding MGP_C57BL6NJ_T0092078.1 MGP_C57BL6NJ_G0034992.1 mouse_genomes_project 9 25242419 25285945 - MGP_C57BL6NJ_P0092078 Gm1110 protein_coding protein_coding MGP_C57BL6NJ_T0092824.1 MGP_C57BL6NJ_G0035281.1 mouse_genomes_project 9 51033955 51035238 - MGP_C57BL6NJ_P0092824 Hspb2 protein_coding protein_coding MGP_C57BL6NJ_T0005583.1 MGP_C57BL6NJ_G0004724.1 mouse_genomes_project 9 22532509 22536628 - Gm15600 antisense antisense MGP_C57BL6NJ_T0095425.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115750002 115848053 + MGP_C57BL6NJ_P0095425 Setd2 protein_coding protein_coding MGP_C57BL6NJ_T0095426.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115766915 115848034 + MGP_C57BL6NJ_P0095426 Setd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095427.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115770241 115783359 + MGP_C57BL6NJ_P0095427 Setd2 protein_coding protein_coding MGP_C57BL6NJ_T0095428.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115780067 115786683 + Setd2 protein_coding retained_intron MGP_C57BL6NJ_T0095429.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115780149 115789476 + Setd2 protein_coding retained_intron MGP_C57BL6NJ_T0095430.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115796586 115848027 + MGP_C57BL6NJ_P0095430 Setd2 protein_coding protein_coding MGP_C57BL6NJ_T0095431.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115796848 115821866 + MGP_C57BL6NJ_P0095431 Setd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095432.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115821730 115834291 + Setd2 protein_coding retained_intron MGP_C57BL6NJ_T0095433.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115831356 115847568 + MGP_C57BL6NJ_P0095433 Setd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095434.1 MGP_C57BL6NJ_G0035848.1 mouse_genomes_project 9 115847020 115848027 + Setd2 protein_coding retained_intron MGP_C57BL6NJ_T0005592.1 MGP_C57BL6NJ_G0004733.1 mouse_genomes_project 9 41611475 41624624 + Gm16214 antisense antisense MGP_C57BL6NJ_T0099175.1 MGP_C57BL6NJ_G0037239.1 mouse_genomes_project 9 36102537 36102646 + n-R5s82 rRNA rRNA MGP_C57BL6NJ_T0009414.1 MGP_C57BL6NJ_G0007565.1 mouse_genomes_project 9 34439336 34441285 - lincRNA lincRNA MGP_C57BL6NJ_T0092664.1 MGP_C57BL6NJ_G0035231.1 mouse_genomes_project 9 45250374 45257522 + MGP_C57BL6NJ_P0092664 Fxyd2 protein_coding protein_coding MGP_C57BL6NJ_T0092665.1 MGP_C57BL6NJ_G0035231.1 mouse_genomes_project 9 45253373 45257512 + MGP_C57BL6NJ_P0092665 Fxyd2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092372.1 MGP_C57BL6NJ_G0035112.1 mouse_genomes_project 9 38255699 38256702 + MGP_C57BL6NJ_P0092372 Olfr933 protein_coding protein_coding MGP_C57BL6NJ_T0099531.1 MGP_C57BL6NJ_G0037582.1 mouse_genomes_project 9 41134772 41135106 + Gm28119 sense_intronic sense_intronic MGP_C57BL6NJ_T0009469.1 MGP_C57BL6NJ_G0007608.1 mouse_genomes_project 9 80754655 80757621 + C920006O11Rik lincRNA lincRNA MGP_C57BL6NJ_T0002500.1 MGP_C57BL6NJ_G0002388.1 mouse_genomes_project 9 34790113 34791184 + TEC TEC MGP_C57BL6NJ_T0002498.1 MGP_C57BL6NJ_G0002386.1 mouse_genomes_project 9 33451020 33470942 + TEC TEC MGP_C57BL6NJ_T0005579.1 MGP_C57BL6NJ_G0004722.1 mouse_genomes_project 9 19016199 19054929 + 1700084C06Rik antisense antisense MGP_C57BL6NJ_T0091636.1 MGP_C57BL6NJ_G0034815.1 mouse_genomes_project 9 4469007 4480331 + MGP_C57BL6NJ_P0091636 Mmp3 protein_coding protein_coding MGP_C57BL6NJ_T0011372.1 MGP_C57BL6NJ_G0009457.1 mouse_genomes_project 9 128678223 128678362 - Mir8106 miRNA miRNA MGP_C57BL6NJ_T0002505.1 MGP_C57BL6NJ_G0002393.1 mouse_genomes_project 9 73889452 73892655 - TEC TEC MGP_C57BL6NJ_T0016515.1 MGP_C57BL6NJ_G0014560.1 mouse_genomes_project 9 60446643 60447118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002618.1 MGP_C57BL6NJ_G0002505.1 mouse_genomes_project 9 128129437 128132746 - TEC TEC MGP_C57BL6NJ_T0009509.1 MGP_C57BL6NJ_G0007639.1 mouse_genomes_project 9 105761664 105767459 + Gm28979 lincRNA lincRNA MGP_C57BL6NJ_T0092234.1 MGP_C57BL6NJ_G0035042.1 mouse_genomes_project 9 35559910 35570356 - MGP_C57BL6NJ_P0092234 Gm5615 protein_coding protein_coding MGP_C57BL6NJ_T0092301.1 MGP_C57BL6NJ_G0035057.1 mouse_genomes_project 9 36618555 36656498 + MGP_C57BL6NJ_P0092301 Msantd2 protein_coding protein_coding MGP_C57BL6NJ_T0016575.1 MGP_C57BL6NJ_G0014620.1 mouse_genomes_project 9 93209709 93210172 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102007.1 MGP_C57BL6NJ_G0040053.1 mouse_genomes_project 9 46499725 46499855 + Gm22659 snoRNA snoRNA MGP_C57BL6NJ_T0011304.1 MGP_C57BL6NJ_G0009389.1 mouse_genomes_project 9 17879715 17879782 + Gm26231 miRNA miRNA MGP_C57BL6NJ_T0102039.1 MGP_C57BL6NJ_G0040085.1 mouse_genomes_project 9 105812930 105813062 - Gm24638 snoRNA snoRNA MGP_C57BL6NJ_T0092412.1 MGP_C57BL6NJ_G0035146.1 mouse_genomes_project 9 39364196 39365276 + MGP_C57BL6NJ_P0092412 Olfr974 protein_coding protein_coding MGP_C57BL6NJ_T0094595.1 MGP_C57BL6NJ_G0035711.1 mouse_genomes_project 9 110579727 110688572 - MGP_C57BL6NJ_P0094595 Col6a5 protein_coding protein_coding MGP_C57BL6NJ_T0094596.1 MGP_C57BL6NJ_G0035711.1 mouse_genomes_project 9 110580975 110676678 - MGP_C57BL6NJ_P0094596 Col6a5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094597.1 MGP_C57BL6NJ_G0035711.1 mouse_genomes_project 9 110582325 110688572 - MGP_C57BL6NJ_P0094597 Col6a5 protein_coding protein_coding MGP_C57BL6NJ_T0094598.1 MGP_C57BL6NJ_G0035711.1 mouse_genomes_project 9 110599336 110605459 - Col6a5 protein_coding retained_intron MGP_C57BL6NJ_T0092320.1 MGP_C57BL6NJ_G0035067.1 mouse_genomes_project 9 36940143 36941517 + MGP_C57BL6NJ_P0092320 Olfr875 protein_coding protein_coding MGP_C57BL6NJ_T0094613.1 MGP_C57BL6NJ_G0035716.1 mouse_genomes_project 9 110948379 110961865 + MGP_C57BL6NJ_P0094613 Twf2 protein_coding protein_coding MGP_C57BL6NJ_T0094614.1 MGP_C57BL6NJ_G0035716.1 mouse_genomes_project 9 110948408 110958732 + MGP_C57BL6NJ_P0094614 Twf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094615.1 MGP_C57BL6NJ_G0035716.1 mouse_genomes_project 9 110948416 110959295 + MGP_C57BL6NJ_P0094615 Twf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094616.1 MGP_C57BL6NJ_G0035716.1 mouse_genomes_project 9 110952067 110961863 + MGP_C57BL6NJ_P0094616 Twf2 protein_coding protein_coding MGP_C57BL6NJ_T0094617.1 MGP_C57BL6NJ_G0035716.1 mouse_genomes_project 9 110960703 110961497 + Twf2 protein_coding retained_intron MGP_C57BL6NJ_T0093408.1 MGP_C57BL6NJ_G0035458.1 mouse_genomes_project 9 67246335 67391275 - MGP_C57BL6NJ_P0093408 Zfp609 protein_coding protein_coding MGP_C57BL6NJ_T0093409.1 MGP_C57BL6NJ_G0035458.1 mouse_genomes_project 9 67253814 67255089 - Zfp609 protein_coding processed_transcript MGP_C57BL6NJ_T0093410.1 MGP_C57BL6NJ_G0035458.1 mouse_genomes_project 9 67354918 67357494 - MGP_C57BL6NJ_P0093410 Zfp609 protein_coding protein_coding MGP_C57BL6NJ_T0016492.1 MGP_C57BL6NJ_G0014537.1 mouse_genomes_project 9 20811493 20811961 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092839.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51062095 51132947 + MGP_C57BL6NJ_P0092839 Alg9 protein_coding protein_coding MGP_C57BL6NJ_T0092840.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51062381 51132961 + MGP_C57BL6NJ_P0092840 Alg9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092841.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51062443 51078312 + MGP_C57BL6NJ_P0092841 Alg9 protein_coding protein_coding MGP_C57BL6NJ_T0092842.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51062622 51070448 + Alg9 protein_coding processed_transcript MGP_C57BL6NJ_T0092843.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51063185 51066181 + Alg9 protein_coding processed_transcript MGP_C57BL6NJ_T0092844.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51092765 51132182 + MGP_C57BL6NJ_P0092844 Alg9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092845.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51099409 51132781 + MGP_C57BL6NJ_P0092845 Alg9 protein_coding protein_coding MGP_C57BL6NJ_T0092846.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51113153 51132390 + Alg9 protein_coding processed_transcript MGP_C57BL6NJ_T0092847.1 MGP_C57BL6NJ_G0035285.1 mouse_genomes_project 9 51125224 51132510 + Alg9 protein_coding processed_transcript MGP_C57BL6NJ_T0102047.1 MGP_C57BL6NJ_G0040093.1 mouse_genomes_project 9 115298422 115298548 - Gm23377 snoRNA snoRNA MGP_C57BL6NJ_T0016553.1 MGP_C57BL6NJ_G0014598.1 mouse_genomes_project 9 83802934 83803805 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002521.1 MGP_C57BL6NJ_G0002409.1 mouse_genomes_project 9 74813685 74819141 + TEC TEC MGP_C57BL6NJ_T0093411.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67392632 67460320 - MGP_C57BL6NJ_P0093411 Trip4 protein_coding protein_coding MGP_C57BL6NJ_T0093412.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67402648 67416804 - Trip4 protein_coding retained_intron MGP_C57BL6NJ_T0093413.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67452377 67486856 - MGP_C57BL6NJ_P0093413 Trip4 protein_coding protein_coding MGP_C57BL6NJ_T0093417.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67469877 67486789 - Trip4 protein_coding processed_transcript MGP_C57BL6NJ_T0093418.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67470215 67486856 - Trip4 protein_coding processed_transcript MGP_C57BL6NJ_T0093419.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67470681 67486864 - Trip4 protein_coding processed_transcript MGP_C57BL6NJ_T0093420.1 MGP_C57BL6NJ_G0035459.1 mouse_genomes_project 9 67475704 67486856 - Trip4 protein_coding retained_intron MGP_C57BL6NJ_T0016534.1 MGP_C57BL6NJ_G0014579.1 mouse_genomes_project 9 76598739 76599217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102580.1 MGP_C57BL6NJ_G0040407.1 mouse_genomes_project 9 103717686 103732412 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102581.1 MGP_C57BL6NJ_G0040407.1 mouse_genomes_project 9 103731900 103736187 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0016530.1 MGP_C57BL6NJ_G0014575.1 mouse_genomes_project 9 74672758 74673575 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011298.1 MGP_C57BL6NJ_G0009383.1 mouse_genomes_project 9 6806749 6806850 - Gm26195 miRNA miRNA MGP_C57BL6NJ_T0091813.1 MGP_C57BL6NJ_G0034879.1 mouse_genomes_project 9 16687226 16688165 + MGP_C57BL6NJ_P0091813 Olfr834 protein_coding protein_coding MGP_C57BL6NJ_T0091695.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11014427 11074823 + MGP_C57BL6NJ_P0091695 Mtmr2 protein_coding protein_coding MGP_C57BL6NJ_T0091696.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11015198 11074823 + MGP_C57BL6NJ_P0091696 Mtmr2 protein_coding protein_coding MGP_C57BL6NJ_T0091697.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11015202 11047962 + Mtmr2 protein_coding processed_transcript MGP_C57BL6NJ_T0091698.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11015214 11074823 + MGP_C57BL6NJ_P0091698 Mtmr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091699.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11015336 11050476 + MGP_C57BL6NJ_P0091699 Mtmr2 protein_coding protein_coding MGP_C57BL6NJ_T0091700.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11015406 11050476 + MGP_C57BL6NJ_P0091700 Mtmr2 protein_coding protein_coding MGP_C57BL6NJ_T0091701.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11028600 11056344 + MGP_C57BL6NJ_P0091701 Mtmr2 protein_coding protein_coding MGP_C57BL6NJ_T0091702.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11029363 11050474 + Mtmr2 protein_coding processed_transcript MGP_C57BL6NJ_T0091703.1 MGP_C57BL6NJ_G0034838.1 mouse_genomes_project 9 11060277 11074822 + Mtmr2 protein_coding retained_intron MGP_C57BL6NJ_T0092826.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51048915 51054511 - MGP_C57BL6NJ_P0092826 1110032A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0092827.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51049770 51054180 - MGP_C57BL6NJ_P0092827 1110032A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0092828.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51049772 51052172 - MGP_C57BL6NJ_P0092828 1110032A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0092829.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51049796 51062597 - 1110032A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0092830.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51049799 51050632 - 1110032A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0092831.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51049926 51054219 - MGP_C57BL6NJ_P0092831 1110032A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0092832.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51050766 51054157 - 1110032A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0092833.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51050880 51054228 - 1110032A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0092837.1 MGP_C57BL6NJ_G0035283.1 mouse_genomes_project 9 51054652 51057007 - 1110032A03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0101982.1 MGP_C57BL6NJ_G0040028.1 mouse_genomes_project 9 12698095 12698232 + Gm25791 snoRNA snoRNA MGP_C57BL6NJ_T0095123.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492288 113509166 + MGP_C57BL6NJ_P0095123 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095124.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492569 113504145 + MGP_C57BL6NJ_P0095124 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095125.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492585 113521708 + MGP_C57BL6NJ_P0095125 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095126.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492592 113537808 + MGP_C57BL6NJ_P0095126 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095127.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492596 113537979 + MGP_C57BL6NJ_P0095127 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095128.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492634 113504131 + MGP_C57BL6NJ_P0095128 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095129.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492637 113504171 + MGP_C57BL6NJ_P0095129 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095130.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492638 113521477 + MGP_C57BL6NJ_P0095130 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095131.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492880 113505899 + Qrich1 protein_coding retained_intron MGP_C57BL6NJ_T0095132.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113492904 113504167 + MGP_C57BL6NJ_P0095132 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095133.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113503683 113508916 + MGP_C57BL6NJ_P0095133 Qrich1 protein_coding protein_coding MGP_C57BL6NJ_T0095134.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113532629 113537384 + Qrich1 protein_coding retained_intron MGP_C57BL6NJ_T0095135.1 MGP_C57BL6NJ_G0035796.1 mouse_genomes_project 9 113532967 113537215 + Qrich1 protein_coding retained_intron MGP_C57BL6NJ_T0092478.1 MGP_C57BL6NJ_G0035171.1 mouse_genomes_project 9 41939737 41954118 - Tecta protein_coding processed_transcript MGP_C57BL6NJ_T0092479.1 MGP_C57BL6NJ_G0035171.1 mouse_genomes_project 9 41939740 42009961 - MGP_C57BL6NJ_P0092479 Tecta protein_coding protein_coding MGP_C57BL6NJ_T0092480.1 MGP_C57BL6NJ_G0035171.1 mouse_genomes_project 9 41939813 42009759 - MGP_C57BL6NJ_P0092480 Tecta protein_coding protein_coding MGP_C57BL6NJ_T0094939.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863332 112863899 + Uba7 protein_coding processed_transcript MGP_C57BL6NJ_T0094940.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863361 112871884 + MGP_C57BL6NJ_P0094940 Uba7 protein_coding protein_coding MGP_C57BL6NJ_T0094941.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863397 112871884 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094942.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863402 112871884 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094943.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863409 112868323 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094944.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863433 112863978 + Uba7 protein_coding processed_transcript MGP_C57BL6NJ_T0094945.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863433 112871884 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094946.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863482 112871886 + MGP_C57BL6NJ_P0094946 Uba7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094947.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112863783 112871888 + MGP_C57BL6NJ_P0094947 Uba7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094948.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112864135 112864794 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094949.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112864718 112865352 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094950.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112867566 112870613 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094951.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112868717 112871027 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094952.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112870852 112871881 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094953.1 MGP_C57BL6NJ_G0035769.1 mouse_genomes_project 9 112870862 112871779 + Uba7 protein_coding retained_intron MGP_C57BL6NJ_T0094453.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107725085 107753274 - MGP_C57BL6NJ_P0094453 Trf protein_coding protein_coding MGP_C57BL6NJ_T0094454.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107729759 107753445 - MGP_C57BL6NJ_P0094454 Trf protein_coding protein_coding MGP_C57BL6NJ_T0094455.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107729989 107732971 - Trf protein_coding retained_intron MGP_C57BL6NJ_T0094456.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107731532 107740831 - MGP_C57BL6NJ_P0094456 Trf protein_coding protein_coding MGP_C57BL6NJ_T0094457.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107731600 107743028 - MGP_C57BL6NJ_P0094457 Trf protein_coding protein_coding MGP_C57BL6NJ_T0094458.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107736778 107753271 - MGP_C57BL6NJ_P0094458 Trf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094459.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107741859 107743640 - Trf protein_coding retained_intron MGP_C57BL6NJ_T0094460.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107743061 107753267 - MGP_C57BL6NJ_P0094460 Trf protein_coding protein_coding MGP_C57BL6NJ_T0094461.1 MGP_C57BL6NJ_G0035689.1 mouse_genomes_project 9 107744049 107751443 - MGP_C57BL6NJ_P0094461 Trf protein_coding protein_coding MGP_C57BL6NJ_T0091671.1 MGP_C57BL6NJ_G0034827.1 mouse_genomes_project 9 5143807 5202583 - MGP_C57BL6NJ_P0091671 Cep126 protein_coding protein_coding MGP_C57BL6NJ_T0094752.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112186446 112197763 - MGP_C57BL6NJ_P0094752 Hemk1 protein_coding protein_coding MGP_C57BL6NJ_T0094753.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112187054 112197730 - Hemk1 protein_coding retained_intron MGP_C57BL6NJ_T0094754.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112187072 112196076 - Hemk1 protein_coding processed_transcript MGP_C57BL6NJ_T0094755.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112187074 112188815 - Hemk1 protein_coding retained_intron MGP_C57BL6NJ_T0094756.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112187353 112197745 - MGP_C57BL6NJ_P0094756 Hemk1 protein_coding protein_coding MGP_C57BL6NJ_T0094757.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112188722 112190213 - Hemk1 protein_coding retained_intron MGP_C57BL6NJ_T0094758.1 MGP_C57BL6NJ_G0035743.1 mouse_genomes_project 9 112194557 112197714 - Hemk1 protein_coding retained_intron MGP_C57BL6NJ_T0002524.1 MGP_C57BL6NJ_G0002412.1 mouse_genomes_project 9 75098808 75100082 - TEC TEC MGP_C57BL6NJ_T0005605.1 MGP_C57BL6NJ_G0004742.1 mouse_genomes_project 9 52206004 52249256 - Arhgap20os antisense antisense MGP_C57BL6NJ_T0005606.1 MGP_C57BL6NJ_G0004742.1 mouse_genomes_project 9 52212697 52249173 - Arhgap20os antisense antisense MGP_C57BL6NJ_T0005607.1 MGP_C57BL6NJ_G0004742.1 mouse_genomes_project 9 52212705 52249255 - Arhgap20os antisense antisense MGP_C57BL6NJ_T0005608.1 MGP_C57BL6NJ_G0004742.1 mouse_genomes_project 9 52213562 52249158 - Arhgap20os antisense antisense MGP_C57BL6NJ_T0100727.1 MGP_C57BL6NJ_G0038773.1 mouse_genomes_project 9 74705823 74705930 + Gm23057 snRNA snRNA MGP_C57BL6NJ_T0095784.1 MGP_C57BL6NJ_G0035944.1 mouse_genomes_project 9 128000510 128036536 + MGP_C57BL6NJ_P0095784 Vipr1 protein_coding protein_coding MGP_C57BL6NJ_T0095785.1 MGP_C57BL6NJ_G0035944.1 mouse_genomes_project 9 128000845 128023860 + Vipr1 protein_coding processed_transcript MGP_C57BL6NJ_T0095786.1 MGP_C57BL6NJ_G0035944.1 mouse_genomes_project 9 128028196 128029489 + Vipr1 protein_coding retained_intron MGP_C57BL6NJ_T0095787.1 MGP_C57BL6NJ_G0035944.1 mouse_genomes_project 9 128032294 128033091 + Vipr1 protein_coding retained_intron MGP_C57BL6NJ_T0091808.1 MGP_C57BL6NJ_G0034874.1 mouse_genomes_project 9 16496474 16497413 - MGP_C57BL6NJ_P0091808 Olfr828 protein_coding protein_coding MGP_C57BL6NJ_T0093701.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75135487 75172587 - MGP_C57BL6NJ_P0093701 Pigb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093702.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75136549 75143726 - MGP_C57BL6NJ_P0093702 Pigb protein_coding protein_coding MGP_C57BL6NJ_T0093704.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75141779 75171908 - MGP_C57BL6NJ_P0093704 Pigb protein_coding protein_coding MGP_C57BL6NJ_T0093705.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75142732 75171860 - MGP_C57BL6NJ_P0093705 Pigb protein_coding protein_coding MGP_C57BL6NJ_T0093707.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75143764 75171908 - MGP_C57BL6NJ_P0093707 Pigb protein_coding protein_coding MGP_C57BL6NJ_T0093708.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75145679 75147273 - Pigb protein_coding retained_intron MGP_C57BL6NJ_T0093709.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75150393 75169000 - MGP_C57BL6NJ_P0093709 Pigb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093710.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75159899 75162939 - Pigb protein_coding retained_intron MGP_C57BL6NJ_T0093711.1 MGP_C57BL6NJ_G0035516.1 mouse_genomes_project 9 75165194 75166982 - Pigb protein_coding retained_intron MGP_C57BL6NJ_T0011330.1 MGP_C57BL6NJ_G0009415.1 mouse_genomes_project 9 55269307 55269376 + Mir5710 miRNA miRNA MGP_C57BL6NJ_T0092988.1 MGP_C57BL6NJ_G0035334.1 mouse_genomes_project 9 56068987 56130100 - MGP_C57BL6NJ_P0092988 Etfa protein_coding protein_coding MGP_C57BL6NJ_T0092989.1 MGP_C57BL6NJ_G0035334.1 mouse_genomes_project 9 56089898 56105025 - Etfa protein_coding processed_transcript MGP_C57BL6NJ_T0092990.1 MGP_C57BL6NJ_G0035334.1 mouse_genomes_project 9 56104248 56129977 - Etfa protein_coding processed_transcript MGP_C57BL6NJ_T0092991.1 MGP_C57BL6NJ_G0035334.1 mouse_genomes_project 9 56106337 56129665 - Etfa protein_coding processed_transcript MGP_C57BL6NJ_T0011299.1 MGP_C57BL6NJ_G0009384.1 mouse_genomes_project 9 7043236 7043327 + Mir6237 miRNA miRNA MGP_C57BL6NJ_T0093792.1 MGP_C57BL6NJ_G0035541.1 mouse_genomes_project 9 79423703 79517201 - MGP_C57BL6NJ_P0093792 Tinag protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093793.1 MGP_C57BL6NJ_G0035541.1 mouse_genomes_project 9 79423703 79517246 - MGP_C57BL6NJ_P0093793 Tinag protein_coding protein_coding MGP_C57BL6NJ_T0005672.1 MGP_C57BL6NJ_G0004784.1 mouse_genomes_project 9 102126769 102129119 + 4921534H16Rik antisense antisense MGP_C57BL6NJ_T0005673.1 MGP_C57BL6NJ_G0004784.1 mouse_genomes_project 9 102126769 102135525 + 4921534H16Rik antisense antisense MGP_C57BL6NJ_T0093956.1 MGP_C57BL6NJ_G0035579.1 mouse_genomes_project 9 86533877 86628053 + MGP_C57BL6NJ_P0093956 Sh3bgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0093957.1 MGP_C57BL6NJ_G0035579.1 mouse_genomes_project 9 86533879 86534562 + Sh3bgrl2 protein_coding retained_intron MGP_C57BL6NJ_T0093958.1 MGP_C57BL6NJ_G0035579.1 mouse_genomes_project 9 86533900 86627519 + MGP_C57BL6NJ_P0093958 Sh3bgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0093959.1 MGP_C57BL6NJ_G0035579.1 mouse_genomes_project 9 86534009 86589292 + MGP_C57BL6NJ_P0093959 Sh3bgrl2 protein_coding protein_coding MGP_C57BL6NJ_T0002604.1 MGP_C57BL6NJ_G0002491.1 mouse_genomes_project 9 113520601 113521747 + TEC TEC MGP_C57BL6NJ_T0091720.1 MGP_C57BL6NJ_G0034842.1 mouse_genomes_project 9 11658772 11690771 - MGP_C57BL6NJ_P0091720 Endod1 protein_coding protein_coding MGP_C57BL6NJ_T0095039.1 MGP_C57BL6NJ_G0035784.1 mouse_genomes_project 9 113234138 113239136 - MGP_C57BL6NJ_P0095039 Tcta protein_coding protein_coding MGP_C57BL6NJ_T0095040.1 MGP_C57BL6NJ_G0035784.1 mouse_genomes_project 9 113234834 113239306 - MGP_C57BL6NJ_P0095040 Tcta protein_coding protein_coding MGP_C57BL6NJ_T0095041.1 MGP_C57BL6NJ_G0035784.1 mouse_genomes_project 9 113235070 113239094 - MGP_C57BL6NJ_P0095041 Tcta protein_coding protein_coding MGP_C57BL6NJ_T0095604.1 MGP_C57BL6NJ_G0035880.1 mouse_genomes_project 9 119611042 119655586 + MGP_C57BL6NJ_P0095604 Susd5 protein_coding protein_coding MGP_C57BL6NJ_T0005682.1 MGP_C57BL6NJ_G0004793.1 mouse_genomes_project 9 110891276 110902186 + D030055H07Rik antisense antisense MGP_C57BL6NJ_T0005683.1 MGP_C57BL6NJ_G0004793.1 mouse_genomes_project 9 110897432 110902232 + D030055H07Rik antisense antisense MGP_C57BL6NJ_T0005684.1 MGP_C57BL6NJ_G0004793.1 mouse_genomes_project 9 110898820 110902682 + D030055H07Rik antisense antisense MGP_C57BL6NJ_T0093026.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57827878 57845335 + MGP_C57BL6NJ_P0093026 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093027.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57831176 57886157 + MGP_C57BL6NJ_P0093027 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093028.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57832214 57886155 + MGP_C57BL6NJ_P0093028 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093029.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57832237 57886157 + MGP_C57BL6NJ_P0093029 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093030.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57832466 57851239 + MGP_C57BL6NJ_P0093030 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093031.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57836996 57886157 + MGP_C57BL6NJ_P0093031 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093032.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57842419 57886157 + MGP_C57BL6NJ_P0093032 Sin3a protein_coding protein_coding MGP_C57BL6NJ_T0093033.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57851083 57855336 + Sin3a protein_coding retained_intron MGP_C57BL6NJ_T0093034.1 MGP_C57BL6NJ_G0035350.1 mouse_genomes_project 9 57871248 57882982 + Sin3a protein_coding retained_intron MGP_C57BL6NJ_T0005651.1 MGP_C57BL6NJ_G0004771.1 mouse_genomes_project 9 86404811 86429065 + Gm2087 antisense antisense MGP_C57BL6NJ_T0095742.1 MGP_C57BL6NJ_G0035933.1 mouse_genomes_project 9 126339996 126359471 + MGP_C57BL6NJ_P0095742 Mobp protein_coding protein_coding MGP_C57BL6NJ_T0095743.1 MGP_C57BL6NJ_G0035933.1 mouse_genomes_project 9 126339996 126366172 + MGP_C57BL6NJ_P0095743 Mobp protein_coding protein_coding MGP_C57BL6NJ_T0095744.1 MGP_C57BL6NJ_G0035933.1 mouse_genomes_project 9 126339996 126371565 + MGP_C57BL6NJ_P0095744 Mobp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095745.1 MGP_C57BL6NJ_G0035933.1 mouse_genomes_project 9 126339996 126366172 + MGP_C57BL6NJ_P0095745 Mobp protein_coding protein_coding MGP_C57BL6NJ_T0011295.1 MGP_C57BL6NJ_G0009380.1 mouse_genomes_project 9 1291865 1291949 - Gm23811 miRNA miRNA MGP_C57BL6NJ_T0092733.1 MGP_C57BL6NJ_G0035248.1 mouse_genomes_project 9 46962311 46967883 + MGP_C57BL6NJ_P0092733 Gm4791 protein_coding protein_coding MGP_C57BL6NJ_T0092177.1 MGP_C57BL6NJ_G0035021.1 mouse_genomes_project 9 34116479 34129916 + protein_coding processed_transcript MGP_C57BL6NJ_T0092190.1 MGP_C57BL6NJ_G0035021.1 mouse_genomes_project 9 34127668 34132863 + MGP_C57BL6NJ_P0092190 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092191.1 MGP_C57BL6NJ_G0035021.1 mouse_genomes_project 9 34128273 34129231 + protein_coding retained_intron MGP_C57BL6NJ_T0092192.1 MGP_C57BL6NJ_G0035021.1 mouse_genomes_project 9 34131695 34162340 + MGP_C57BL6NJ_P0092192 protein_coding protein_coding MGP_C57BL6NJ_T0093847.1 MGP_C57BL6NJ_G0035555.1 mouse_genomes_project 9 80916892 80918483 - MGP_C57BL6NJ_P0093847 Omt2b protein_coding protein_coding MGP_C57BL6NJ_T0093850.1 MGP_C57BL6NJ_G0035555.1 mouse_genomes_project 9 80916916 80918916 - MGP_C57BL6NJ_P0093850 Omt2b protein_coding protein_coding MGP_C57BL6NJ_T0093851.1 MGP_C57BL6NJ_G0035555.1 mouse_genomes_project 9 80917068 80918331 - MGP_C57BL6NJ_P0093851 Omt2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093853.1 MGP_C57BL6NJ_G0035555.1 mouse_genomes_project 9 80917415 80918459 - Omt2b protein_coding retained_intron MGP_C57BL6NJ_T0093854.1 MGP_C57BL6NJ_G0035555.1 mouse_genomes_project 9 80917948 80918459 - MGP_C57BL6NJ_P0093854 Omt2b protein_coding protein_coding MGP_C57BL6NJ_T0005701.1 MGP_C57BL6NJ_G0004805.1 mouse_genomes_project 9 112642850 112643630 + Gm37850 antisense antisense MGP_C57BL6NJ_T0095683.1 MGP_C57BL6NJ_G0035909.1 mouse_genomes_project 9 125132114 125153819 - MGP_C57BL6NJ_P0095683 Plcd1 protein_coding protein_coding MGP_C57BL6NJ_T0092868.1 MGP_C57BL6NJ_G0035288.1 mouse_genomes_project 9 51368607 51388361 - MGP_C57BL6NJ_P0092868 Layn protein_coding protein_coding MGP_C57BL6NJ_T0092399.1 MGP_C57BL6NJ_G0035133.1 mouse_genomes_project 9 38977208 38979518 + MGP_C57BL6NJ_P0092399 Olfr960 protein_coding protein_coding MGP_C57BL6NJ_T0092870.1 MGP_C57BL6NJ_G0035290.1 mouse_genomes_project 9 51430958 51434658 + MGP_C57BL6NJ_P0092870 Btg4 protein_coding protein_coding MGP_C57BL6NJ_T0012013.1 MGP_C57BL6NJ_G0010098.1 mouse_genomes_project 9 116586807 116587083 - Gm24860 misc_RNA misc_RNA MGP_C57BL6NJ_T0002492.1 MGP_C57BL6NJ_G0002380.1 mouse_genomes_project 9 31285399 31288032 - TEC TEC MGP_C57BL6NJ_T0092688.1 MGP_C57BL6NJ_G0035236.1 mouse_genomes_project 9 45788307 45812438 + MGP_C57BL6NJ_P0092688 Pcsk7 protein_coding protein_coding MGP_C57BL6NJ_T0002607.1 MGP_C57BL6NJ_G0002494.1 mouse_genomes_project 9 114820064 114821604 + TEC TEC MGP_C57BL6NJ_T0009505.1 MGP_C57BL6NJ_G0007635.1 mouse_genomes_project 9 103617068 103618526 + Gm28087 lincRNA lincRNA MGP_C57BL6NJ_T0093604.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73653850 73805449 - MGP_C57BL6NJ_P0093604 Cgnl1 protein_coding protein_coding MGP_C57BL6NJ_T0093605.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73653850 73805449 - MGP_C57BL6NJ_P0093605 Cgnl1 protein_coding protein_coding MGP_C57BL6NJ_T0093606.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73656200 73658450 - Cgnl1 protein_coding retained_intron MGP_C57BL6NJ_T0093607.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73656552 73805407 - MGP_C57BL6NJ_P0093607 Cgnl1 protein_coding protein_coding MGP_C57BL6NJ_T0093608.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73657678 73658671 - Cgnl1 protein_coding retained_intron MGP_C57BL6NJ_T0093609.1 MGP_C57BL6NJ_G0035503.1 mouse_genomes_project 9 73659973 73675691 - Cgnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0093721.1 MGP_C57BL6NJ_G0035520.1 mouse_genomes_project 9 75247812 75259632 + MGP_C57BL6NJ_P0093721 Rsl24d1 protein_coding protein_coding MGP_C57BL6NJ_T0093722.1 MGP_C57BL6NJ_G0035520.1 mouse_genomes_project 9 75247867 75258244 + MGP_C57BL6NJ_P0093722 Rsl24d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093723.1 MGP_C57BL6NJ_G0035520.1 mouse_genomes_project 9 75248960 75258191 + MGP_C57BL6NJ_P0093723 Rsl24d1 protein_coding protein_coding MGP_C57BL6NJ_T0102036.1 MGP_C57BL6NJ_G0040082.1 mouse_genomes_project 9 104027769 104027896 - Gm23949 snoRNA snoRNA MGP_C57BL6NJ_T0093977.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88816902 88881237 - MGP_C57BL6NJ_P0093977 Ibtk protein_coding protein_coding MGP_C57BL6NJ_T0093978.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88817084 88881237 - MGP_C57BL6NJ_P0093978 Ibtk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093979.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88817099 88852367 - Ibtk protein_coding retained_intron MGP_C57BL6NJ_T0093980.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88839711 88850082 - Ibtk protein_coding retained_intron MGP_C57BL6NJ_T0093981.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88851726 88881217 - Ibtk protein_coding retained_intron MGP_C57BL6NJ_T0093982.1 MGP_C57BL6NJ_G0035585.1 mouse_genomes_project 9 88859836 88862779 - Ibtk protein_coding retained_intron MGP_C57BL6NJ_T0091974.1 MGP_C57BL6NJ_G0034947.1 mouse_genomes_project 9 19578965 19583088 - MGP_C57BL6NJ_P0091974 Yipf2 protein_coding protein_coding MGP_C57BL6NJ_T0091975.1 MGP_C57BL6NJ_G0034947.1 mouse_genomes_project 9 19578965 19583088 - MGP_C57BL6NJ_P0091975 Yipf2 protein_coding protein_coding MGP_C57BL6NJ_T0091976.1 MGP_C57BL6NJ_G0034947.1 mouse_genomes_project 9 19578965 19583088 - MGP_C57BL6NJ_P0091976 Yipf2 protein_coding protein_coding MGP_C57BL6NJ_T0099537.1 MGP_C57BL6NJ_G0037588.1 mouse_genomes_project 9 113342606 113343730 + Gm37963 sense_intronic sense_intronic MGP_C57BL6NJ_T0092139.1 MGP_C57BL6NJ_G0035011.1 mouse_genomes_project 9 30563216 30635706 - MGP_C57BL6NJ_P0092139 Barx2 protein_coding protein_coding MGP_C57BL6NJ_T0093378.1 MGP_C57BL6NJ_G0035448.1 mouse_genomes_project 9 66900453 66903422 - MGP_C57BL6NJ_P0093378 Kbtbd13 protein_coding protein_coding MGP_C57BL6NJ_T0095475.1 MGP_C57BL6NJ_G0035857.1 mouse_genomes_project 9 116113336 116121369 + MGP_C57BL6NJ_P0095475 Prss45 protein_coding protein_coding MGP_C57BL6NJ_T0095476.1 MGP_C57BL6NJ_G0035857.1 mouse_genomes_project 9 116113336 116121366 + MGP_C57BL6NJ_P0095476 Prss45 protein_coding protein_coding MGP_C57BL6NJ_T0093387.1 MGP_C57BL6NJ_G0035453.1 mouse_genomes_project 9 67024176 67039720 - MGP_C57BL6NJ_P0093387 Ankdd1a protein_coding protein_coding MGP_C57BL6NJ_T0093388.1 MGP_C57BL6NJ_G0035453.1 mouse_genomes_project 9 67024176 67042921 - MGP_C57BL6NJ_P0093388 Ankdd1a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092312.1 MGP_C57BL6NJ_G0035063.1 mouse_genomes_project 9 36787982 36795953 - Tbrg1 protein_coding retained_intron MGP_C57BL6NJ_T0092313.1 MGP_C57BL6NJ_G0035063.1 mouse_genomes_project 9 36787982 36796052 - MGP_C57BL6NJ_P0092313 Tbrg1 protein_coding protein_coding MGP_C57BL6NJ_T0092314.1 MGP_C57BL6NJ_G0035063.1 mouse_genomes_project 9 36790711 36795898 - Tbrg1 protein_coding retained_intron MGP_C57BL6NJ_T0092315.1 MGP_C57BL6NJ_G0035063.1 mouse_genomes_project 9 36792653 36795908 - Tbrg1 protein_coding retained_intron MGP_C57BL6NJ_T0091978.1 MGP_C57BL6NJ_G0034949.1 mouse_genomes_project 9 19612024 19702866 + MGP_C57BL6NJ_P0091978 Smarca4 protein_coding protein_coding MGP_C57BL6NJ_T0091979.1 MGP_C57BL6NJ_G0034949.1 mouse_genomes_project 9 19612024 19702853 + MGP_C57BL6NJ_P0091979 Smarca4 protein_coding protein_coding MGP_C57BL6NJ_T0091980.1 MGP_C57BL6NJ_G0034949.1 mouse_genomes_project 9 19612119 19702002 + MGP_C57BL6NJ_P0091980 Smarca4 protein_coding protein_coding MGP_C57BL6NJ_T0091981.1 MGP_C57BL6NJ_G0034949.1 mouse_genomes_project 9 19633280 19683582 + MGP_C57BL6NJ_P0091981 Smarca4 protein_coding protein_coding MGP_C57BL6NJ_T0011350.1 MGP_C57BL6NJ_G0009435.1 mouse_genomes_project 9 109018073 109018148 + Mir2136 miRNA miRNA MGP_C57BL6NJ_T0093567.1 MGP_C57BL6NJ_G0035491.1 mouse_genomes_project 9 72351017 72364955 - MGP_C57BL6NJ_P0093567 Ccnb2 protein_coding protein_coding MGP_C57BL6NJ_T0002599.1 MGP_C57BL6NJ_G0002486.1 mouse_genomes_project 9 112698027 112699112 - TEC TEC MGP_C57BL6NJ_T0005693.1 MGP_C57BL6NJ_G0004800.1 mouse_genomes_project 9 112288750 112295461 - Gm17141 antisense antisense MGP_C57BL6NJ_T0011344.1 MGP_C57BL6NJ_G0009429.1 mouse_genomes_project 9 78275032 78275136 + Gm44355 miRNA miRNA MGP_C57BL6NJ_T0012004.1 MGP_C57BL6NJ_G0010089.1 mouse_genomes_project 9 79222292 79222585 - Gm23791 misc_RNA misc_RNA MGP_C57BL6NJ_T0005595.1 MGP_C57BL6NJ_G0004735.1 mouse_genomes_project 9 43843731 43845174 + antisense antisense MGP_C57BL6NJ_T0093401.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67212272 67240805 + Oaz2 protein_coding processed_transcript MGP_C57BL6NJ_T0093402.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67213920 67239748 + Oaz2 protein_coding processed_transcript MGP_C57BL6NJ_T0093403.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67221906 67242834 + MGP_C57BL6NJ_P0093403 Oaz2 protein_coding protein_coding MGP_C57BL6NJ_T0093404.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67221937 67240470 + Oaz2 protein_coding retained_intron MGP_C57BL6NJ_T0093405.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67221944 67242800 + MGP_C57BL6NJ_P0093405 Oaz2 protein_coding protein_coding MGP_C57BL6NJ_T0093406.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67221949 67240461 + MGP_C57BL6NJ_P0093406 Oaz2 protein_coding protein_coding MGP_C57BL6NJ_T0093407.1 MGP_C57BL6NJ_G0035457.1 mouse_genomes_project 9 67239728 67241370 + MGP_C57BL6NJ_P0093407 Oaz2 protein_coding protein_coding MGP_C57BL6NJ_T0100738.1 MGP_C57BL6NJ_G0038784.1 mouse_genomes_project 9 93839268 93839445 + Gm22866 snRNA snRNA MGP_C57BL6NJ_T0095663.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124608045 124931731 + MGP_C57BL6NJ_P0095663 Itga9 protein_coding protein_coding MGP_C57BL6NJ_T0095664.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124696686 124828097 + Itga9 protein_coding processed_transcript MGP_C57BL6NJ_T0095665.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124725708 124928453 + MGP_C57BL6NJ_P0095665 Itga9 protein_coding protein_coding MGP_C57BL6NJ_T0095666.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124828149 124866903 + MGP_C57BL6NJ_P0095666 Itga9 protein_coding protein_coding MGP_C57BL6NJ_T0095667.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124862682 124900344 + Itga9 protein_coding processed_transcript MGP_C57BL6NJ_T0095668.1 MGP_C57BL6NJ_G0035906.1 mouse_genomes_project 9 124900472 124928042 + Itga9 protein_coding processed_transcript MGP_C57BL6NJ_T0016567.1 MGP_C57BL6NJ_G0014612.1 mouse_genomes_project 9 91047208 91047710 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092016.1 MGP_C57BL6NJ_G0034968.1 mouse_genomes_project 9 20178736 20179917 - MGP_C57BL6NJ_P0092016 Elof1 protein_coding protein_coding MGP_C57BL6NJ_T0092017.1 MGP_C57BL6NJ_G0034968.1 mouse_genomes_project 9 20178737 20182896 - MGP_C57BL6NJ_P0092017 Elof1 protein_coding protein_coding MGP_C57BL6NJ_T0092476.1 MGP_C57BL6NJ_G0035170.1 mouse_genomes_project 9 41859279 41869403 - MGP_C57BL6NJ_P0092476 Sc5d protein_coding protein_coding MGP_C57BL6NJ_T0092477.1 MGP_C57BL6NJ_G0035170.1 mouse_genomes_project 9 41859835 41869303 - MGP_C57BL6NJ_P0092477 Sc5d protein_coding protein_coding MGP_C57BL6NJ_T0093186.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60673124 60712092 + MGP_C57BL6NJ_P0093186 Gramd2 protein_coding protein_coding MGP_C57BL6NJ_T0093187.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60705805 60719065 + MGP_C57BL6NJ_P0093187 Gramd2 protein_coding protein_coding MGP_C57BL6NJ_T0093188.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60705932 60714593 + MGP_C57BL6NJ_P0093188 Gramd2 protein_coding protein_coding MGP_C57BL6NJ_T0093189.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60708325 60712010 + Gramd2 protein_coding retained_intron MGP_C57BL6NJ_T0093190.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60709349 60714483 + MGP_C57BL6NJ_P0093190 Gramd2 protein_coding protein_coding MGP_C57BL6NJ_T0093191.1 MGP_C57BL6NJ_G0035397.1 mouse_genomes_project 9 60712284 60719065 + Gramd2 protein_coding retained_intron MGP_C57BL6NJ_T0092347.1 MGP_C57BL6NJ_G0035093.1 mouse_genomes_project 9 37733260 37734196 + MGP_C57BL6NJ_P0092347 Olfr906 protein_coding protein_coding MGP_C57BL6NJ_T0094592.1 MGP_C57BL6NJ_G0035710.1 mouse_genomes_project 9 110396895 110548057 - MGP_C57BL6NJ_P0094592 Col6a6 protein_coding protein_coding MGP_C57BL6NJ_T0094593.1 MGP_C57BL6NJ_G0035710.1 mouse_genomes_project 9 110398503 110547982 - MGP_C57BL6NJ_P0094593 Col6a6 protein_coding protein_coding MGP_C57BL6NJ_T0094594.1 MGP_C57BL6NJ_G0035710.1 mouse_genomes_project 9 110486280 110527529 - MGP_C57BL6NJ_P0094594 Col6a6 protein_coding protein_coding MGP_C57BL6NJ_T0095237.1 MGP_C57BL6NJ_G0035812.1 mouse_genomes_project 9 113967009 113968164 + MGP_C57BL6NJ_P0095237 Ucn2 protein_coding protein_coding MGP_C57BL6NJ_T0102022.1 MGP_C57BL6NJ_G0040068.1 mouse_genomes_project 9 75997515 75997645 - Gm25105 snoRNA snoRNA MGP_C57BL6NJ_T0011319.1 MGP_C57BL6NJ_G0009404.1 mouse_genomes_project 9 42494184 42494263 - Gm27509 miRNA miRNA MGP_C57BL6NJ_T0094544.1 MGP_C57BL6NJ_G0035705.1 mouse_genomes_project 9 109816978 109818715 - MGP_C57BL6NJ_P0094544 1700080E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0094545.1 MGP_C57BL6NJ_G0035705.1 mouse_genomes_project 9 109817934 109818699 - MGP_C57BL6NJ_P0094545 1700080E11Rik protein_coding protein_coding MGP_C57BL6NJ_T0092102.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27519722 28534277 - MGP_C57BL6NJ_P0092102 Ntm protein_coding protein_coding MGP_C57BL6NJ_T0092103.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27520989 27952240 - MGP_C57BL6NJ_P0092103 Ntm protein_coding protein_coding MGP_C57BL6NJ_T0092104.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27521208 27539137 - MGP_C57BL6NJ_P0092104 Ntm protein_coding protein_coding MGP_C57BL6NJ_T0092105.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27521471 27539137 - MGP_C57BL6NJ_P0092105 Ntm protein_coding protein_coding MGP_C57BL6NJ_T0092106.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27533979 27951772 - MGP_C57BL6NJ_P0092106 Ntm protein_coding protein_coding MGP_C57BL6NJ_T0092107.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27534105 27717501 - Ntm protein_coding processed_transcript MGP_C57BL6NJ_T0092108.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27534128 27636801 - Ntm protein_coding processed_transcript MGP_C57BL6NJ_T0092109.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27538115 28534278 - Ntm protein_coding retained_intron MGP_C57BL6NJ_T0092110.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27708296 28534278 - Ntm protein_coding retained_intron MGP_C57BL6NJ_T0092111.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 27951623 28534267 - Ntm protein_coding processed_transcript MGP_C57BL6NJ_T0092112.1 MGP_C57BL6NJ_G0035001.1 mouse_genomes_project 9 28513037 28534289 - Ntm protein_coding processed_transcript MGP_C57BL6NJ_T0092734.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560514 47899245 + MGP_C57BL6NJ_P0092734 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0092735.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560552 47896382 + MGP_C57BL6NJ_P0092735 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0092736.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560585 47903497 + MGP_C57BL6NJ_P0092736 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0092737.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560598 47896824 + MGP_C57BL6NJ_P0092737 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0092738.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560598 47899240 + MGP_C57BL6NJ_P0092738 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0092739.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560693 47861852 + Cadm1 protein_coding retained_intron MGP_C57BL6NJ_T0092740.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560693 47834042 + Cadm1 protein_coding retained_intron MGP_C57BL6NJ_T0092741.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560714 47856738 + Cadm1 protein_coding processed_transcript MGP_C57BL6NJ_T0092742.1 MGP_C57BL6NJ_G0035249.1 mouse_genomes_project 9 47560714 47896185 + MGP_C57BL6NJ_P0092742 Cadm1 protein_coding protein_coding MGP_C57BL6NJ_T0099183.1 MGP_C57BL6NJ_G0037247.1 mouse_genomes_project 9 100555783 100555899 - n-R5s87 rRNA rRNA MGP_C57BL6NJ_T0091731.1 MGP_C57BL6NJ_G0034847.1 mouse_genomes_project 9 12085340 12089004 - MGP_C57BL6NJ_P0091731 Fut4 protein_coding protein_coding MGP_C57BL6NJ_T0100686.1 MGP_C57BL6NJ_G0038732.1 mouse_genomes_project 9 3664016 3664121 - Gm23097 snRNA snRNA MGP_C57BL6NJ_T0094920.1 MGP_C57BL6NJ_G0035764.1 mouse_genomes_project 9 112769451 112786817 + MGP_C57BL6NJ_P0094920 Mon1a protein_coding protein_coding MGP_C57BL6NJ_T0094921.1 MGP_C57BL6NJ_G0035764.1 mouse_genomes_project 9 112769482 112786822 + MGP_C57BL6NJ_P0094921 Mon1a protein_coding protein_coding MGP_C57BL6NJ_T0009471.1 MGP_C57BL6NJ_G0007610.1 mouse_genomes_project 9 82868398 82870818 - Gm17477 lincRNA lincRNA MGP_C57BL6NJ_T0016544.1 MGP_C57BL6NJ_G0014589.1 mouse_genomes_project 9 79462922 79463127 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094533.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109714807 109746123 + MGP_C57BL6NJ_P0094533 Mrpl3 protein_coding protein_coding MGP_C57BL6NJ_T0094534.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109714807 109742707 + MGP_C57BL6NJ_P0094534 Mrpl3 protein_coding protein_coding MGP_C57BL6NJ_T0094535.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109714838 109723488 + MGP_C57BL6NJ_P0094535 Mrpl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094536.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109714838 109717196 + MGP_C57BL6NJ_P0094536 Mrpl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094537.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109714869 109743701 + MGP_C57BL6NJ_P0094537 Mrpl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094538.1 MGP_C57BL6NJ_G0035703.1 mouse_genomes_project 9 109737422 109740352 + Mrpl3 protein_coding retained_intron MGP_C57BL6NJ_T0011300.1 MGP_C57BL6NJ_G0009385.1 mouse_genomes_project 9 10883067 10883168 + Gm22643 miRNA miRNA MGP_C57BL6NJ_T0102034.1 MGP_C57BL6NJ_G0040080.1 mouse_genomes_project 9 99519267 99519377 + Gm25582 snoRNA snoRNA MGP_C57BL6NJ_T0092087.1 MGP_C57BL6NJ_G0034995.1 mouse_genomes_project 9 25369118 25397719 - MGP_C57BL6NJ_P0092087 Vps26b protein_coding protein_coding MGP_C57BL6NJ_T0009445.1 MGP_C57BL6NJ_G0007589.1 mouse_genomes_project 9 62477911 62479308 - Gm10655 lincRNA lincRNA MGP_C57BL6NJ_T0009446.1 MGP_C57BL6NJ_G0007589.1 mouse_genomes_project 9 62477992 62478742 - Gm10655 lincRNA lincRNA MGP_C57BL6NJ_T0095850.1 MGP_C57BL6NJ_G0035964.1 mouse_genomes_project 9 129328014 129339311 - MGP_C57BL6NJ_P0095850 Zfp445 protein_coding protein_coding MGP_C57BL6NJ_T0092541.1 MGP_C57BL6NJ_G0035190.1 mouse_genomes_project 9 43996603 44013543 - MGP_C57BL6NJ_P0092541 Nlrx1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095050.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113296985 113346070 + MGP_C57BL6NJ_P0095050 Usp4 protein_coding protein_coding MGP_C57BL6NJ_T0095051.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113297006 113337500 + MGP_C57BL6NJ_P0095051 Usp4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095052.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113297029 113306951 + Usp4 protein_coding retained_intron MGP_C57BL6NJ_T0095053.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113297045 113346045 + MGP_C57BL6NJ_P0095053 Usp4 protein_coding protein_coding MGP_C57BL6NJ_T0095054.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113305584 113307066 + Usp4 protein_coding processed_transcript MGP_C57BL6NJ_T0095055.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113311452 113314471 + Usp4 protein_coding retained_intron MGP_C57BL6NJ_T0095056.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113319532 113321852 + Usp4 protein_coding retained_intron MGP_C57BL6NJ_T0095057.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113324302 113345784 + MGP_C57BL6NJ_P0095057 Usp4 protein_coding protein_coding MGP_C57BL6NJ_T0095058.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113332980 113345317 + MGP_C57BL6NJ_P0095058 Usp4 protein_coding protein_coding MGP_C57BL6NJ_T0095059.1 MGP_C57BL6NJ_G0035787.1 mouse_genomes_project 9 113344400 113345770 + Usp4 protein_coding retained_intron MGP_C57BL6NJ_T0095268.1 MGP_C57BL6NJ_G0035816.1 mouse_genomes_project 9 114041290 114043092 - MGP_C57BL6NJ_P0095268 Trex1 protein_coding protein_coding MGP_C57BL6NJ_T0095270.1 MGP_C57BL6NJ_G0035816.1 mouse_genomes_project 9 114041295 114042609 - MGP_C57BL6NJ_P0095270 Trex1 protein_coding protein_coding MGP_C57BL6NJ_T0011318.1 MGP_C57BL6NJ_G0009403.1 mouse_genomes_project 9 42052790 42052859 + Gm44311 miRNA miRNA MGP_C57BL6NJ_T0100748.1 MGP_C57BL6NJ_G0038794.1 mouse_genomes_project 9 111942934 111943041 + Gm22454 snRNA snRNA MGP_C57BL6NJ_T0002544.1 MGP_C57BL6NJ_G0002431.1 mouse_genomes_project 9 90417475 90418553 - TEC TEC MGP_C57BL6NJ_T0092577.1 MGP_C57BL6NJ_G0035207.1 mouse_genomes_project 9 44386023 44419678 + MGP_C57BL6NJ_P0092577 Ddx6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0019001.1 MGP_C57BL6NJ_G0016134.1 mouse_genomes_project 9 64724136 64818204 + Gm16759 processed_transcript lincRNA MGP_C57BL6NJ_T0019002.1 MGP_C57BL6NJ_G0016134.1 mouse_genomes_project 9 64724909 64896960 + Gm16759 processed_transcript lincRNA MGP_C57BL6NJ_T0019003.1 MGP_C57BL6NJ_G0016134.1 mouse_genomes_project 9 64724916 64750620 + Gm16759 processed_transcript lincRNA MGP_C57BL6NJ_T0019004.1 MGP_C57BL6NJ_G0016134.1 mouse_genomes_project 9 64857228 64895290 + Gm16759 processed_transcript processed_transcript MGP_C57BL6NJ_T0094674.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111266139 111272742 - MGP_C57BL6NJ_P0094674 Parp3 protein_coding protein_coding MGP_C57BL6NJ_T0094675.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111266437 111272169 - MGP_C57BL6NJ_P0094675 Parp3 protein_coding protein_coding MGP_C57BL6NJ_T0094676.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111266799 111271962 - Parp3 protein_coding retained_intron MGP_C57BL6NJ_T0094677.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111266799 111272462 - MGP_C57BL6NJ_P0094677 Parp3 protein_coding protein_coding MGP_C57BL6NJ_T0094678.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111266805 111267829 - Parp3 protein_coding retained_intron MGP_C57BL6NJ_T0094679.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111270214 111271897 - MGP_C57BL6NJ_P0094679 Parp3 protein_coding protein_coding MGP_C57BL6NJ_T0094680.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111270421 111272389 - Parp3 protein_coding retained_intron MGP_C57BL6NJ_T0094681.1 MGP_C57BL6NJ_G0035727.1 mouse_genomes_project 9 111270451 111272188 - MGP_C57BL6NJ_P0094681 Parp3 protein_coding protein_coding MGP_C57BL6NJ_T0091828.1 MGP_C57BL6NJ_G0034894.1 mouse_genomes_project 9 17515249 17519867 + MGP_C57BL6NJ_P0091828 Olfr58 protein_coding protein_coding MGP_C57BL6NJ_T0100726.1 MGP_C57BL6NJ_G0038772.1 mouse_genomes_project 9 74307246 74307350 - Gm25163 snRNA snRNA MGP_C57BL6NJ_T0094436.1 MGP_C57BL6NJ_G0035683.1 mouse_genomes_project 9 107228257 107246063 + MGP_C57BL6NJ_P0094436 Gm5627 protein_coding protein_coding MGP_C57BL6NJ_T0093023.1 MGP_C57BL6NJ_G0035347.1 mouse_genomes_project 9 57672999 57673923 + MGP_C57BL6NJ_P0093023 Imp3 protein_coding protein_coding MGP_C57BL6NJ_T0094145.1 MGP_C57BL6NJ_G0035620.1 mouse_genomes_project 9 95904478 95930743 + MGP_C57BL6NJ_P0094145 Plscr1 protein_coding protein_coding MGP_C57BL6NJ_T0094146.1 MGP_C57BL6NJ_G0035620.1 mouse_genomes_project 9 95905070 95930440 + MGP_C57BL6NJ_P0094146 Plscr1 protein_coding protein_coding MGP_C57BL6NJ_T0094147.1 MGP_C57BL6NJ_G0035620.1 mouse_genomes_project 9 95905132 95928576 + MGP_C57BL6NJ_P0094147 Plscr1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094148.1 MGP_C57BL6NJ_G0035620.1 mouse_genomes_project 9 95921688 95930442 + Plscr1 protein_coding retained_intron MGP_C57BL6NJ_T0095281.1 MGP_C57BL6NJ_G0035819.1 mouse_genomes_project 9 114068148 114078145 + MGP_C57BL6NJ_P0095281 Ccdc51 protein_coding protein_coding MGP_C57BL6NJ_T0094041.1 MGP_C57BL6NJ_G0035597.1 mouse_genomes_project 9 90418716 90496229 - MGP_C57BL6NJ_P0094041 Cep162 protein_coding protein_coding MGP_C57BL6NJ_T0094042.1 MGP_C57BL6NJ_G0035597.1 mouse_genomes_project 9 90435039 90440144 - Cep162 protein_coding processed_transcript MGP_C57BL6NJ_T0094043.1 MGP_C57BL6NJ_G0035597.1 mouse_genomes_project 9 90458720 90461703 - Cep162 protein_coding retained_intron MGP_C57BL6NJ_T0094044.1 MGP_C57BL6NJ_G0035597.1 mouse_genomes_project 9 90459478 90495981 - Cep162 protein_coding retained_intron MGP_C57BL6NJ_T0002562.1 MGP_C57BL6NJ_G0002449.1 mouse_genomes_project 9 101359904 101361784 + TEC TEC MGP_C57BL6NJ_T0100751.1 MGP_C57BL6NJ_G0038797.1 mouse_genomes_project 9 114381032 114381139 - Gm22821 snRNA snRNA MGP_C57BL6NJ_T0092379.1 MGP_C57BL6NJ_G0035119.1 mouse_genomes_project 9 38424373 38441727 + MGP_C57BL6NJ_P0092379 Olfr27 protein_coding protein_coding MGP_C57BL6NJ_T0092825.1 MGP_C57BL6NJ_G0035282.1 mouse_genomes_project 9 51035641 51039517 + MGP_C57BL6NJ_P0092825 Cryab protein_coding protein_coding MGP_C57BL6NJ_T0093869.1 MGP_C57BL6NJ_G0035563.1 mouse_genomes_project 9 81127024 81128406 - MGP_C57BL6NJ_P0093869 protein_coding protein_coding MGP_C57BL6NJ_T0091890.1 MGP_C57BL6NJ_G0034917.1 mouse_genomes_project 9 18700133 18707793 + MGP_C57BL6NJ_P0091890 Rdh8 protein_coding protein_coding MGP_C57BL6NJ_T0093858.1 MGP_C57BL6NJ_G0035557.1 mouse_genomes_project 9 80999094 81003622 - MGP_C57BL6NJ_P0093858 Ooep protein_coding protein_coding MGP_C57BL6NJ_T0009399.1 MGP_C57BL6NJ_G0007550.1 mouse_genomes_project 9 18478301 18483010 - Gm26521 lincRNA lincRNA MGP_C57BL6NJ_T0092204.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34329173 34367560 + MGP_C57BL6NJ_P0092204 Cdon protein_coding protein_coding MGP_C57BL6NJ_T0092205.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34329599 34367535 + MGP_C57BL6NJ_P0092205 Cdon protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092206.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34329642 34430686 + MGP_C57BL6NJ_P0092206 Cdon protein_coding protein_coding MGP_C57BL6NJ_T0092207.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34331633 34392230 + MGP_C57BL6NJ_P0092207 Cdon protein_coding protein_coding MGP_C57BL6NJ_T0092208.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34364270 34430685 + MGP_C57BL6NJ_P0092208 Cdon protein_coding protein_coding MGP_C57BL6NJ_T0092209.1 MGP_C57BL6NJ_G0035025.1 mouse_genomes_project 9 34369672 34391160 + MGP_C57BL6NJ_P0092209 Cdon protein_coding protein_coding MGP_C57BL6NJ_T0093202.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60957538 60975108 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0093203.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60957538 60964802 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0093204.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60957538 60964885 - MGP_C57BL6NJ_P0093204 Nr2e3 protein_coding protein_coding MGP_C57BL6NJ_T0093205.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60957754 60964878 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0093206.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60957895 60964842 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0093207.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60961517 60963559 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0093208.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60962138 60964162 - Nr2e3 protein_coding processed_transcript MGP_C57BL6NJ_T0093209.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60963365 60975104 - Nr2e3 protein_coding processed_transcript MGP_C57BL6NJ_T0093210.1 MGP_C57BL6NJ_G0035400.1 mouse_genomes_project 9 60963485 60964842 - Nr2e3 protein_coding retained_intron MGP_C57BL6NJ_T0091598.1 MGP_C57BL6NJ_G0034803.1 mouse_genomes_project 9 1225177 1228504 + MGP_C57BL6NJ_P0091598 Msantd4 protein_coding protein_coding MGP_C57BL6NJ_T0092377.1 MGP_C57BL6NJ_G0035117.1 mouse_genomes_project 9 38344082 38345018 - MGP_C57BL6NJ_P0092377 Olfr937 protein_coding protein_coding MGP_C57BL6NJ_T0009504.1 MGP_C57BL6NJ_G0007634.1 mouse_genomes_project 9 102926351 103007549 - E330023G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0016626.1 MGP_C57BL6NJ_G0014671.1 mouse_genomes_project 9 112046551 112047820 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092070.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25106164 25149369 - MGP_C57BL6NJ_P0092070 Glb1l2 protein_coding protein_coding MGP_C57BL6NJ_T0092071.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25106165 25149405 - MGP_C57BL6NJ_P0092071 Glb1l2 protein_coding protein_coding MGP_C57BL6NJ_T0092072.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25106888 25149358 - MGP_C57BL6NJ_P0092072 Glb1l2 protein_coding protein_coding MGP_C57BL6NJ_T0092073.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25108323 25145522 - MGP_C57BL6NJ_P0092073 Glb1l2 protein_coding protein_coding MGP_C57BL6NJ_T0092074.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25110617 25111591 - Glb1l2 protein_coding retained_intron MGP_C57BL6NJ_T0092075.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25117143 25135156 - Glb1l2 protein_coding retained_intron MGP_C57BL6NJ_T0092076.1 MGP_C57BL6NJ_G0034990.1 mouse_genomes_project 9 25123796 25149359 - MGP_C57BL6NJ_P0092076 Glb1l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092375.1 MGP_C57BL6NJ_G0035115.1 mouse_genomes_project 9 38303660 38305513 - MGP_C57BL6NJ_P0092375 Olfr146 protein_coding protein_coding MGP_C57BL6NJ_T0091615.1 MGP_C57BL6NJ_G0034808.1 mouse_genomes_project 9 3165981 3380985 + MGP_C57BL6NJ_P0091615 Pdgfd protein_coding protein_coding MGP_C57BL6NJ_T0091616.1 MGP_C57BL6NJ_G0034808.1 mouse_genomes_project 9 3166030 3382309 + MGP_C57BL6NJ_P0091616 Pdgfd protein_coding protein_coding MGP_C57BL6NJ_T0092094.1 MGP_C57BL6NJ_G0034999.1 mouse_genomes_project 9 25808255 25813141 + MGP_C57BL6NJ_P0092094 Spata19 protein_coding protein_coding MGP_C57BL6NJ_T0092881.1 MGP_C57BL6NJ_G0035295.1 mouse_genomes_project 9 52325170 52345382 - MGP_C57BL6NJ_P0092881 Fdx1 protein_coding protein_coding MGP_C57BL6NJ_T0009508.1 MGP_C57BL6NJ_G0007638.1 mouse_genomes_project 9 104806314 104807905 + Gm28166 lincRNA lincRNA MGP_C57BL6NJ_T0092495.1 MGP_C57BL6NJ_G0035177.1 mouse_genomes_project 9 42868415 42887763 - MGP_C57BL6NJ_P0092495 Oaf protein_coding protein_coding MGP_C57BL6NJ_T0009492.1 MGP_C57BL6NJ_G0007626.1 mouse_genomes_project 9 96595863 96617894 + Gm28054 lincRNA lincRNA MGP_C57BL6NJ_T0092717.1 MGP_C57BL6NJ_G0035243.1 mouse_genomes_project 9 46152477 46155241 + MGP_C57BL6NJ_P0092717 Apoa4 protein_coding protein_coding MGP_C57BL6NJ_T0093247.1 MGP_C57BL6NJ_G0035408.1 mouse_genomes_project 9 63077142 63119372 - MGP_C57BL6NJ_P0093247 Kif23 protein_coding protein_coding MGP_C57BL6NJ_T0002519.1 MGP_C57BL6NJ_G0002407.1 mouse_genomes_project 9 74774814 74778316 + TEC TEC MGP_C57BL6NJ_T0092405.1 MGP_C57BL6NJ_G0035139.1 mouse_genomes_project 9 39130645 39131578 + MGP_C57BL6NJ_P0092405 Olfr967 protein_coding protein_coding MGP_C57BL6NJ_T0002504.1 MGP_C57BL6NJ_G0002392.1 mouse_genomes_project 9 73877460 73879192 - TEC TEC MGP_C57BL6NJ_T0095819.1 MGP_C57BL6NJ_G0035952.1 mouse_genomes_project 9 128227525 128236966 - MGP_C57BL6NJ_P0095819 Higd1a protein_coding protein_coding MGP_C57BL6NJ_T0100698.1 MGP_C57BL6NJ_G0038744.1 mouse_genomes_project 9 34395959 34396121 + Gm25630 snRNA snRNA MGP_C57BL6NJ_T0093024.1 MGP_C57BL6NJ_G0035348.1 mouse_genomes_project 9 57687876 57724397 + MGP_C57BL6NJ_P0093024 Snupn protein_coding protein_coding MGP_C57BL6NJ_T0011340.1 MGP_C57BL6NJ_G0009425.1 mouse_genomes_project 9 72349022 72349082 - Mir5626 miRNA miRNA MGP_C57BL6NJ_T0092340.1 MGP_C57BL6NJ_G0035086.1 mouse_genomes_project 9 37574217 37575213 + MGP_C57BL6NJ_P0092340 Olfr250 protein_coding protein_coding MGP_C57BL6NJ_T0092049.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22650420 22730277 - MGP_C57BL6NJ_P0092049 Dpy19l1 protein_coding protein_coding MGP_C57BL6NJ_T0092050.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22650422 22747523 - MGP_C57BL6NJ_P0092050 Dpy19l1 protein_coding protein_coding MGP_C57BL6NJ_T0092051.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22650447 22747523 - MGP_C57BL6NJ_P0092051 Dpy19l1 protein_coding protein_coding MGP_C57BL6NJ_T0092052.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22650695 22663838 - Dpy19l1 protein_coding retained_intron MGP_C57BL6NJ_T0092053.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22662167 22666297 - Dpy19l1 protein_coding retained_intron MGP_C57BL6NJ_T0092054.1 MGP_C57BL6NJ_G0034982.1 mouse_genomes_project 9 22724435 22741555 - Dpy19l1 protein_coding processed_transcript MGP_C57BL6NJ_T0002494.1 MGP_C57BL6NJ_G0002382.1 mouse_genomes_project 9 31315472 31317399 - TEC TEC MGP_C57BL6NJ_T0092117.1 MGP_C57BL6NJ_G0035005.1 mouse_genomes_project 9 29674225 29715165 + MGP_C57BL6NJ_P0092117 Zbtb44 protein_coding protein_coding MGP_C57BL6NJ_T0092118.1 MGP_C57BL6NJ_G0035005.1 mouse_genomes_project 9 29699487 29714893 + MGP_C57BL6NJ_P0092118 Zbtb44 protein_coding protein_coding MGP_C57BL6NJ_T0092358.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 37985802 38010948 + MGP_C57BL6NJ_P0092358 Vwa5a protein_coding protein_coding MGP_C57BL6NJ_T0092359.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 37985806 38010373 + MGP_C57BL6NJ_P0092359 Vwa5a protein_coding protein_coding MGP_C57BL6NJ_T0092360.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 37986572 37990223 + MGP_C57BL6NJ_P0092360 Vwa5a protein_coding protein_coding MGP_C57BL6NJ_T0092361.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 37996090 38002330 + Vwa5a protein_coding retained_intron MGP_C57BL6NJ_T0092362.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 38002121 38003757 + Vwa5a protein_coding retained_intron MGP_C57BL6NJ_T0092363.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 38003597 38005601 + Vwa5a protein_coding retained_intron MGP_C57BL6NJ_T0092364.1 MGP_C57BL6NJ_G0035104.1 mouse_genomes_project 9 38003795 38009531 + MGP_C57BL6NJ_P0092364 Vwa5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009498.1 MGP_C57BL6NJ_G0007629.1 mouse_genomes_project 9 100422405 100424761 - BC043934 lincRNA lincRNA MGP_C57BL6NJ_T0009499.1 MGP_C57BL6NJ_G0007629.1 mouse_genomes_project 9 100422406 100424057 - BC043934 lincRNA lincRNA MGP_C57BL6NJ_T0092949.1 MGP_C57BL6NJ_G0035323.1 mouse_genomes_project 9 55435212 55483977 + MGP_C57BL6NJ_P0092949 Ireb2 protein_coding protein_coding MGP_C57BL6NJ_T0093962.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844293 86878902 + Ttk protein_coding retained_intron MGP_C57BL6NJ_T0093963.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844294 86881798 + MGP_C57BL6NJ_P0093963 Ttk protein_coding protein_coding MGP_C57BL6NJ_T0093964.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844322 86881795 + MGP_C57BL6NJ_P0093964 Ttk protein_coding protein_coding MGP_C57BL6NJ_T0093965.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844338 86847131 + Ttk protein_coding retained_intron MGP_C57BL6NJ_T0093966.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844345 86854023 + Ttk protein_coding processed_transcript MGP_C57BL6NJ_T0093967.1 MGP_C57BL6NJ_G0035581.1 mouse_genomes_project 9 86844370 86852687 + MGP_C57BL6NJ_P0093967 Ttk protein_coding protein_coding MGP_C57BL6NJ_T0092787.1 MGP_C57BL6NJ_G0035273.1 mouse_genomes_project 9 50847185 50857771 + MGP_C57BL6NJ_P0092787 Il18 protein_coding protein_coding MGP_C57BL6NJ_T0092788.1 MGP_C57BL6NJ_G0035273.1 mouse_genomes_project 9 50847185 50857771 + MGP_C57BL6NJ_P0092788 Il18 protein_coding protein_coding MGP_C57BL6NJ_T0094132.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94943119 94965309 + MGP_C57BL6NJ_P0094132 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094133.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94953640 94954407 + Zic4 protein_coding processed_transcript MGP_C57BL6NJ_T0094134.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94954085 94965651 + MGP_C57BL6NJ_P0094134 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094135.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94954167 94967380 + Zic4 protein_coding retained_intron MGP_C57BL6NJ_T0094136.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94954243 94975538 + MGP_C57BL6NJ_P0094136 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094137.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94954771 94965934 + Zic4 protein_coding retained_intron MGP_C57BL6NJ_T0094138.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94956277 94965583 + MGP_C57BL6NJ_P0094138 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094139.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94956486 94974703 + MGP_C57BL6NJ_P0094139 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094140.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94956623 94959197 + Zic4 protein_coding retained_intron MGP_C57BL6NJ_T0094141.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94964590 94971235 + Zic4 protein_coding retained_intron MGP_C57BL6NJ_T0094142.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94965035 94976981 + MGP_C57BL6NJ_P0094142 Zic4 protein_coding protein_coding MGP_C57BL6NJ_T0094143.1 MGP_C57BL6NJ_G0035618.1 mouse_genomes_project 9 94969246 94975789 + Zic4 protein_coding processed_transcript MGP_C57BL6NJ_T0092446.1 MGP_C57BL6NJ_G0035163.1 mouse_genomes_project 9 40140156 40225682 + Clmp protein_coding processed_transcript MGP_C57BL6NJ_T0092447.1 MGP_C57BL6NJ_G0035163.1 mouse_genomes_project 9 40140206 40253720 + MGP_C57BL6NJ_P0092447 Clmp protein_coding protein_coding MGP_C57BL6NJ_T0092448.1 MGP_C57BL6NJ_G0035163.1 mouse_genomes_project 9 40140229 40225805 + Clmp protein_coding retained_intron MGP_C57BL6NJ_T0092449.1 MGP_C57BL6NJ_G0035163.1 mouse_genomes_project 9 40241599 40250877 + Clmp protein_coding processed_transcript MGP_C57BL6NJ_T0095926.1 MGP_C57BL6NJ_G0035991.1 mouse_genomes_project 9 130869521 130894754 - MGP_C57BL6NJ_P0095926 2010315B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0095927.1 MGP_C57BL6NJ_G0035991.1 mouse_genomes_project 9 130871358 130894700 - MGP_C57BL6NJ_P0095927 2010315B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0095928.1 MGP_C57BL6NJ_G0035991.1 mouse_genomes_project 9 130871548 130893957 - MGP_C57BL6NJ_P0095928 2010315B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0095929.1 MGP_C57BL6NJ_G0035991.1 mouse_genomes_project 9 130871560 130894729 - MGP_C57BL6NJ_P0095929 2010315B03Rik protein_coding protein_coding MGP_C57BL6NJ_T0095930.1 MGP_C57BL6NJ_G0035991.1 mouse_genomes_project 9 130878791 130894729 - 2010315B03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0094302.1 MGP_C57BL6NJ_G0035653.1 mouse_genomes_project 9 103046973 103047854 + MGP_C57BL6NJ_P0094302 protein_coding protein_coding MGP_C57BL6NJ_T0009497.1 MGP_C57BL6NJ_G0007628.1 mouse_genomes_project 9 98518572 98520183 - Gm29395 lincRNA lincRNA MGP_C57BL6NJ_T0093246.1 MGP_C57BL6NJ_G0035407.1 mouse_genomes_project 9 63070530 63071785 - MGP_C57BL6NJ_P0093246 Gm10073 protein_coding protein_coding MGP_C57BL6NJ_T0091674.1 MGP_C57BL6NJ_G0034830.1 mouse_genomes_project 9 5979457 6053361 + MGP_C57BL6NJ_P0091674 Pgr protein_coding protein_coding MGP_C57BL6NJ_T0091675.1 MGP_C57BL6NJ_G0034830.1 mouse_genomes_project 9 5980043 6028142 + Pgr protein_coding retained_intron MGP_C57BL6NJ_T0091676.1 MGP_C57BL6NJ_G0034830.1 mouse_genomes_project 9 5980092 6050167 + MGP_C57BL6NJ_P0091676 Pgr protein_coding protein_coding MGP_C57BL6NJ_T0011339.1 MGP_C57BL6NJ_G0009424.1 mouse_genomes_project 9 71310016 71310104 + Mir3109 miRNA miRNA MGP_C57BL6NJ_T0093450.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 67990965 68014545 + Herc1 protein_coding retained_intron MGP_C57BL6NJ_T0093451.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 67991041 68166520 + MGP_C57BL6NJ_P0093451 Herc1 protein_coding protein_coding MGP_C57BL6NJ_T0093452.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 68094486 68104566 + Herc1 protein_coding retained_intron MGP_C57BL6NJ_T0093453.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 68103392 68119116 + MGP_C57BL6NJ_P0093453 Herc1 protein_coding protein_coding MGP_C57BL6NJ_T0093454.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 68122980 68131099 + Herc1 protein_coding retained_intron MGP_C57BL6NJ_T0093455.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 68150769 68158609 + Herc1 protein_coding retained_intron MGP_C57BL6NJ_T0093456.1 MGP_C57BL6NJ_G0035467.1 mouse_genomes_project 9 68158342 68165338 + Herc1 protein_coding retained_intron MGP_C57BL6NJ_T0011317.1 MGP_C57BL6NJ_G0009402.1 mouse_genomes_project 9 41134790 41134867 + Mir125b-1 miRNA miRNA MGP_C57BL6NJ_T0011311.1 MGP_C57BL6NJ_G0009396.1 mouse_genomes_project 9 20179691 20179761 - Mir7084 miRNA miRNA MGP_C57BL6NJ_T0016542.1 MGP_C57BL6NJ_G0014587.1 mouse_genomes_project 9 79209185 79210083 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092423.1 MGP_C57BL6NJ_G0035157.1 mouse_genomes_project 9 39573892 39576651 + MGP_C57BL6NJ_P0092423 Tmem225 protein_coding protein_coding MGP_C57BL6NJ_T0094164.1 MGP_C57BL6NJ_G0035625.1 mouse_genomes_project 9 98359037 98379244 - MGP_C57BL6NJ_P0094164 1190002N15Rik protein_coding protein_coding MGP_C57BL6NJ_T0091916.1 MGP_C57BL6NJ_G0034932.1 mouse_genomes_project 9 19065069 19076435 - MGP_C57BL6NJ_P0091916 Cdc37 protein_coding protein_coding MGP_C57BL6NJ_T0091746.1 MGP_C57BL6NJ_G0034852.1 mouse_genomes_project 9 12234496 12252567 - MGP_C57BL6NJ_P0091746 Izumo1r protein_coding protein_coding MGP_C57BL6NJ_T0091747.1 MGP_C57BL6NJ_G0034852.1 mouse_genomes_project 9 12241731 12252632 - MGP_C57BL6NJ_P0091747 Izumo1r protein_coding protein_coding MGP_C57BL6NJ_T0091748.1 MGP_C57BL6NJ_G0034852.1 mouse_genomes_project 9 12248705 12252615 - MGP_C57BL6NJ_P0091748 Izumo1r protein_coding protein_coding MGP_C57BL6NJ_T0091749.1 MGP_C57BL6NJ_G0034852.1 mouse_genomes_project 9 12248710 12252439 - MGP_C57BL6NJ_P0091749 Izumo1r protein_coding protein_coding MGP_C57BL6NJ_T0091750.1 MGP_C57BL6NJ_G0034852.1 mouse_genomes_project 9 12249452 12252437 - MGP_C57BL6NJ_P0091750 Izumo1r protein_coding protein_coding MGP_C57BL6NJ_T0092368.1 MGP_C57BL6NJ_G0035108.1 mouse_genomes_project 9 38095427 38096495 + MGP_C57BL6NJ_P0092368 Olfr923 protein_coding protein_coding MGP_C57BL6NJ_T0095267.1 MGP_C57BL6NJ_G0035815.1 mouse_genomes_project 9 114041290 114057375 - MGP_C57BL6NJ_P0095267 Gm42641 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095269.1 MGP_C57BL6NJ_G0035815.1 mouse_genomes_project 9 114041293 114057424 - Gm42641 protein_coding retained_intron MGP_C57BL6NJ_T0095271.1 MGP_C57BL6NJ_G0035815.1 mouse_genomes_project 9 114041827 114043696 - MGP_C57BL6NJ_P0095271 Gm42641 protein_coding protein_coding MGP_C57BL6NJ_T0100750.1 MGP_C57BL6NJ_G0038796.1 mouse_genomes_project 9 113745048 113745155 - Gm24259 snRNA snRNA MGP_C57BL6NJ_T0011345.1 MGP_C57BL6NJ_G0009430.1 mouse_genomes_project 9 80096772 80096848 + Gm25250 miRNA miRNA MGP_C57BL6NJ_T0005639.1 MGP_C57BL6NJ_G0004763.1 mouse_genomes_project 9 78259810 78384154 - Gm26903 antisense antisense MGP_C57BL6NJ_T0093377.1 MGP_C57BL6NJ_G0035447.1 mouse_genomes_project 9 66858063 66889426 + MGP_C57BL6NJ_P0093377 Ubap1l protein_coding protein_coding MGP_C57BL6NJ_T0016561.1 MGP_C57BL6NJ_G0014606.1 mouse_genomes_project 9 88934138 88934946 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011301.1 MGP_C57BL6NJ_G0009386.1 mouse_genomes_project 9 12695861 12695920 + Mir7650 miRNA miRNA MGP_C57BL6NJ_T0009449.1 MGP_C57BL6NJ_G0007592.1 mouse_genomes_project 9 69521079 69524278 - lincRNA lincRNA MGP_C57BL6NJ_T0009450.1 MGP_C57BL6NJ_G0007592.1 mouse_genomes_project 9 69521080 69524278 - lincRNA lincRNA MGP_C57BL6NJ_T0009451.1 MGP_C57BL6NJ_G0007592.1 mouse_genomes_project 9 69521080 69524300 - lincRNA lincRNA MGP_C57BL6NJ_T0091814.1 MGP_C57BL6NJ_G0034880.1 mouse_genomes_project 9 16737228 16738164 + MGP_C57BL6NJ_P0091814 Olfr835 protein_coding protein_coding MGP_C57BL6NJ_T0093571.1 MGP_C57BL6NJ_G0035493.1 mouse_genomes_project 9 72497964 72551258 + MGP_C57BL6NJ_P0093571 Sltm protein_coding protein_coding MGP_C57BL6NJ_T0100742.1 MGP_C57BL6NJ_G0038788.1 mouse_genomes_project 9 99872313 99872491 + Gm24004 snRNA snRNA MGP_C57BL6NJ_T0094071.1 MGP_C57BL6NJ_G0035603.1 mouse_genomes_project 9 91851557 91876442 + MGP_C57BL6NJ_P0094071 Zfp949 protein_coding protein_coding MGP_C57BL6NJ_T0094072.1 MGP_C57BL6NJ_G0035603.1 mouse_genomes_project 9 91851581 91872667 + MGP_C57BL6NJ_P0094072 Zfp949 protein_coding protein_coding MGP_C57BL6NJ_T0094073.1 MGP_C57BL6NJ_G0035603.1 mouse_genomes_project 9 91851622 91873564 + Zfp949 protein_coding retained_intron MGP_C57BL6NJ_T0094074.1 MGP_C57BL6NJ_G0035603.1 mouse_genomes_project 9 91851637 91858861 + MGP_C57BL6NJ_P0094074 Zfp949 protein_coding protein_coding MGP_C57BL6NJ_T0094075.1 MGP_C57BL6NJ_G0035603.1 mouse_genomes_project 9 91851720 91876442 + MGP_C57BL6NJ_P0094075 Zfp949 protein_coding protein_coding MGP_C57BL6NJ_T0002617.1 MGP_C57BL6NJ_G0002504.1 mouse_genomes_project 9 126372646 126373280 + TEC TEC MGP_C57BL6NJ_T0094582.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352034 110388371 + Pik3r4 protein_coding retained_intron MGP_C57BL6NJ_T0094583.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352037 110353816 + MGP_C57BL6NJ_P0094583 Pik3r4 protein_coding protein_coding MGP_C57BL6NJ_T0094584.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352064 110364747 + Pik3r4 protein_coding retained_intron MGP_C57BL6NJ_T0094585.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352071 110372873 + Pik3r4 protein_coding retained_intron MGP_C57BL6NJ_T0094586.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352086 110396618 + MGP_C57BL6NJ_P0094586 Pik3r4 protein_coding protein_coding MGP_C57BL6NJ_T0094587.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352226 110396744 + MGP_C57BL6NJ_P0094587 Pik3r4 protein_coding protein_coding MGP_C57BL6NJ_T0094588.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110352257 110358053 + MGP_C57BL6NJ_P0094588 Pik3r4 protein_coding protein_coding MGP_C57BL6NJ_T0094589.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110367445 110378056 + MGP_C57BL6NJ_P0094589 Pik3r4 protein_coding protein_coding MGP_C57BL6NJ_T0094590.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110370219 110372412 + Pik3r4 protein_coding retained_intron MGP_C57BL6NJ_T0094591.1 MGP_C57BL6NJ_G0035709.1 mouse_genomes_project 9 110390796 110395481 + Pik3r4 protein_coding retained_intron MGP_C57BL6NJ_T0092356.1 MGP_C57BL6NJ_G0035102.1 mouse_genomes_project 9 37941393 37942371 - MGP_C57BL6NJ_P0092356 Olfr918 protein_coding protein_coding MGP_C57BL6NJ_T0009525.1 MGP_C57BL6NJ_G0007652.1 mouse_genomes_project 9 113972213 113972570 - Gm38004 lincRNA lincRNA MGP_C57BL6NJ_T0094673.1 MGP_C57BL6NJ_G0035726.1 mouse_genomes_project 9 111258363 111260340 - MGP_C57BL6NJ_P0094673 Gpr62 protein_coding protein_coding MGP_C57BL6NJ_T0102009.1 MGP_C57BL6NJ_G0040055.1 mouse_genomes_project 9 54152064 54152193 + Gm22304 snoRNA snoRNA MGP_C57BL6NJ_T0005635.1 MGP_C57BL6NJ_G0004760.1 mouse_genomes_project 9 74503714 74504415 - Gm27231 antisense antisense MGP_C57BL6NJ_T0093184.1 MGP_C57BL6NJ_G0035396.1 mouse_genomes_project 9 60649360 60672356 + MGP_C57BL6NJ_P0093184 Pkm protein_coding protein_coding MGP_C57BL6NJ_T0093185.1 MGP_C57BL6NJ_G0035396.1 mouse_genomes_project 9 60649360 60672356 + MGP_C57BL6NJ_P0093185 Pkm protein_coding protein_coding MGP_C57BL6NJ_T0091811.1 MGP_C57BL6NJ_G0034877.1 mouse_genomes_project 9 16632098 16645944 - MGP_C57BL6NJ_P0091811 protein_coding protein_coding MGP_C57BL6NJ_T0091896.1 MGP_C57BL6NJ_G0034919.1 mouse_genomes_project 9 18759398 18765269 - MGP_C57BL6NJ_P0091896 Angptl6 protein_coding protein_coding MGP_C57BL6NJ_T0009397.1 MGP_C57BL6NJ_G0007548.1 mouse_genomes_project 9 12191205 12193428 + Gm16302 lincRNA lincRNA MGP_C57BL6NJ_T0016633.1 MGP_C57BL6NJ_G0014678.1 mouse_genomes_project 9 121173109 121175059 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095824.1 MGP_C57BL6NJ_G0035957.1 mouse_genomes_project 9 128376016 128390470 - MGP_C57BL6NJ_P0095824 Pomgnt2 protein_coding protein_coding MGP_C57BL6NJ_T0091762.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700397 12716875 - MGP_C57BL6NJ_P0091762 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091763.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700397 12742217 - MGP_C57BL6NJ_P0091763 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091764.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700399 12716982 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0091765.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700402 12724577 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0091766.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700402 12742217 - MGP_C57BL6NJ_P0091766 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091767.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700579 12739139 - MGP_C57BL6NJ_P0091767 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091768.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12700755 12701440 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0091769.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12706481 12709662 - MGP_C57BL6NJ_P0091769 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091770.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12709024 12715461 - MGP_C57BL6NJ_P0091770 Cep295 protein_coding protein_coding MGP_C57BL6NJ_T0091771.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12709087 12710559 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0091772.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12727607 12735333 - Cep295 protein_coding processed_transcript MGP_C57BL6NJ_T0091773.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12728796 12735863 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0091774.1 MGP_C57BL6NJ_G0034859.1 mouse_genomes_project 9 12730702 12736244 - Cep295 protein_coding retained_intron MGP_C57BL6NJ_T0092420.1 MGP_C57BL6NJ_G0035154.1 mouse_genomes_project 9 39514262 39515804 - MGP_C57BL6NJ_P0092420 Olfr983 protein_coding protein_coding MGP_C57BL6NJ_T0092677.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45740938 45788608 - MGP_C57BL6NJ_P0092677 Rnf214 protein_coding protein_coding MGP_C57BL6NJ_T0092678.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45741204 45788616 - MGP_C57BL6NJ_P0092678 Rnf214 protein_coding protein_coding MGP_C57BL6NJ_T0092679.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45741204 45788146 - MGP_C57BL6NJ_P0092679 Rnf214 protein_coding protein_coding MGP_C57BL6NJ_T0092680.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45741803 45788112 - Rnf214 protein_coding retained_intron MGP_C57BL6NJ_T0092681.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45741812 45788600 - MGP_C57BL6NJ_P0092681 Rnf214 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092682.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45742347 45788633 - MGP_C57BL6NJ_P0092682 Rnf214 protein_coding protein_coding MGP_C57BL6NJ_T0092683.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45746320 45749301 - Rnf214 protein_coding retained_intron MGP_C57BL6NJ_T0092684.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45751389 45754179 - Rnf214 protein_coding retained_intron MGP_C57BL6NJ_T0092685.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45772413 45780385 - Rnf214 protein_coding retained_intron MGP_C57BL6NJ_T0092686.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45772708 45788126 - MGP_C57BL6NJ_P0092686 Rnf214 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092687.1 MGP_C57BL6NJ_G0035235.1 mouse_genomes_project 9 45777942 45781993 - Rnf214 protein_coding retained_intron MGP_C57BL6NJ_T0095613.1 MGP_C57BL6NJ_G0035889.1 mouse_genomes_project 9 120151004 120151732 + MGP_C57BL6NJ_P0095613 protein_coding protein_coding MGP_C57BL6NJ_T0092219.1 MGP_C57BL6NJ_G0035031.1 mouse_genomes_project 9 34574341 34577427 - MGP_C57BL6NJ_P0092219 Pate3 protein_coding protein_coding MGP_C57BL6NJ_T0094976.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892659 112947441 + MGP_C57BL6NJ_P0094976 Ip6k1 protein_coding protein_coding MGP_C57BL6NJ_T0094977.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892787 112943516 + MGP_C57BL6NJ_P0094977 Ip6k1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094978.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892792 112944370 + Ip6k1 protein_coding processed_transcript MGP_C57BL6NJ_T0094979.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892801 112944768 + Ip6k1 protein_coding retained_intron MGP_C57BL6NJ_T0094980.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892804 112932458 + MGP_C57BL6NJ_P0094980 Ip6k1 protein_coding protein_coding MGP_C57BL6NJ_T0094981.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112892829 112939582 + MGP_C57BL6NJ_P0094981 Ip6k1 protein_coding protein_coding MGP_C57BL6NJ_T0094982.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112919740 112944266 + MGP_C57BL6NJ_P0094982 Ip6k1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094983.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112919772 112929603 + Ip6k1 protein_coding processed_transcript MGP_C57BL6NJ_T0094984.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112929571 112944802 + MGP_C57BL6NJ_P0094984 Ip6k1 protein_coding protein_coding MGP_C57BL6NJ_T0094985.1 MGP_C57BL6NJ_G0035774.1 mouse_genomes_project 9 112943531 112944198 + MGP_C57BL6NJ_P0094985 Ip6k1 protein_coding protein_coding MGP_C57BL6NJ_T0009488.1 MGP_C57BL6NJ_G0007623.1 mouse_genomes_project 9 94992966 95166909 + Gm29478 lincRNA lincRNA MGP_C57BL6NJ_T0092922.1 MGP_C57BL6NJ_G0035314.1 mouse_genomes_project 9 54823007 54873224 + MGP_C57BL6NJ_P0092922 Gldn protein_coding protein_coding MGP_C57BL6NJ_T0092459.1 MGP_C57BL6NJ_G0035165.1 mouse_genomes_project 9 40370000 40373810 + MGP_C57BL6NJ_P0092459 Bsx protein_coding protein_coding MGP_C57BL6NJ_T0093061.1 MGP_C57BL6NJ_G0035355.1 mouse_genomes_project 9 58028892 58039206 - MGP_C57BL6NJ_P0093061 1700017B05Rik protein_coding protein_coding MGP_C57BL6NJ_T0102033.1 MGP_C57BL6NJ_G0040079.1 mouse_genomes_project 9 96203477 96203608 - Gm25417 snoRNA snoRNA MGP_C57BL6NJ_T0009487.1 MGP_C57BL6NJ_G0007622.1 mouse_genomes_project 9 94917575 94921525 + Gm28652 lincRNA lincRNA MGP_C57BL6NJ_T0092923.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54889807 55046084 - MGP_C57BL6NJ_P0092923 Dmxl2 protein_coding protein_coding MGP_C57BL6NJ_T0092924.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54889813 54906744 - Dmxl2 protein_coding retained_intron MGP_C57BL6NJ_T0092925.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54889909 54970125 - MGP_C57BL6NJ_P0092925 Dmxl2 protein_coding protein_coding MGP_C57BL6NJ_T0092926.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54890760 55045954 - MGP_C57BL6NJ_P0092926 Dmxl2 protein_coding protein_coding MGP_C57BL6NJ_T0092927.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54940598 55006570 - MGP_C57BL6NJ_P0092927 Dmxl2 protein_coding protein_coding MGP_C57BL6NJ_T0092928.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54948188 55046029 - Dmxl2 protein_coding retained_intron MGP_C57BL6NJ_T0092929.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 54970035 54971706 - Dmxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0092930.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 55003847 55046084 - Dmxl2 protein_coding retained_intron MGP_C57BL6NJ_T0092931.1 MGP_C57BL6NJ_G0035315.1 mouse_genomes_project 9 55006256 55046218 - MGP_C57BL6NJ_P0092931 Dmxl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093832.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80687732 80746680 + MGP_C57BL6NJ_P0093832 Ick protein_coding protein_coding MGP_C57BL6NJ_T0093833.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80687775 80691970 + MGP_C57BL6NJ_P0093833 Ick protein_coding protein_coding MGP_C57BL6NJ_T0093834.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80691383 80697008 + Ick protein_coding processed_transcript MGP_C57BL6NJ_T0093835.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80691781 80712658 + Ick protein_coding retained_intron MGP_C57BL6NJ_T0093836.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80691824 80704195 + MGP_C57BL6NJ_P0093836 Ick protein_coding protein_coding MGP_C57BL6NJ_T0093837.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80691840 80744155 + MGP_C57BL6NJ_P0093837 Ick protein_coding protein_coding MGP_C57BL6NJ_T0093838.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80691855 80750849 + MGP_C57BL6NJ_P0093838 Ick protein_coding protein_coding MGP_C57BL6NJ_T0093839.1 MGP_C57BL6NJ_G0035549.1 mouse_genomes_project 9 80734067 80749195 + Ick protein_coding retained_intron MGP_C57BL6NJ_T0002577.1 MGP_C57BL6NJ_G0002464.1 mouse_genomes_project 9 105598092 105599445 - TEC TEC MGP_C57BL6NJ_T0099536.1 MGP_C57BL6NJ_G0037587.1 mouse_genomes_project 9 111700207 111701035 + Gm37612 sense_intronic sense_intronic MGP_C57BL6NJ_T0005714.1 MGP_C57BL6NJ_G0004818.1 mouse_genomes_project 9 120910852 120912298 - Gm26962 antisense antisense MGP_C57BL6NJ_T0005705.1 MGP_C57BL6NJ_G0004809.1 mouse_genomes_project 9 112900934 112910427 - antisense antisense MGP_C57BL6NJ_T0092327.1 MGP_C57BL6NJ_G0035074.1 mouse_genomes_project 9 37223864 37225437 + MGP_C57BL6NJ_P0092327 Olfr884 protein_coding protein_coding MGP_C57BL6NJ_T0092328.1 MGP_C57BL6NJ_G0035074.1 mouse_genomes_project 9 37224507 37225437 + MGP_C57BL6NJ_P0092328 Olfr884 protein_coding protein_coding MGP_C57BL6NJ_T0093421.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67486993 67627072 + MGP_C57BL6NJ_P0093421 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093422.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487043 67588465 + Csnk1g1 protein_coding retained_intron MGP_C57BL6NJ_T0093423.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487046 67630175 + MGP_C57BL6NJ_P0093423 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093424.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487055 67630181 + MGP_C57BL6NJ_P0093424 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093425.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487089 67535248 + MGP_C57BL6NJ_P0093425 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093426.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487099 67553619 + Csnk1g1 protein_coding retained_intron MGP_C57BL6NJ_T0093427.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487157 67625606 + MGP_C57BL6NJ_P0093427 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093428.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67487508 67628241 + MGP_C57BL6NJ_P0093428 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093429.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67502278 67616053 + MGP_C57BL6NJ_P0093429 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093430.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67534936 67630171 + MGP_C57BL6NJ_P0093430 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093431.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67592057 67617497 + MGP_C57BL6NJ_P0093431 Csnk1g1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093432.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67594380 67597335 + Csnk1g1 protein_coding retained_intron MGP_C57BL6NJ_T0093433.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67594404 67624895 + MGP_C57BL6NJ_P0093433 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093434.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67594747 67616053 + MGP_C57BL6NJ_P0093434 Csnk1g1 protein_coding protein_coding MGP_C57BL6NJ_T0093435.1 MGP_C57BL6NJ_G0035461.1 mouse_genomes_project 9 67621183 67624913 + Csnk1g1 protein_coding retained_intron MGP_C57BL6NJ_T0092785.1 MGP_C57BL6NJ_G0035271.1 mouse_genomes_project 9 50803890 50825065 - MGP_C57BL6NJ_P0092785 Bco2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092553.1 MGP_C57BL6NJ_G0035193.1 mouse_genomes_project 9 44058000 44070373 - MGP_C57BL6NJ_P0092553 C2cd2l protein_coding protein_coding MGP_C57BL6NJ_T0092572.1 MGP_C57BL6NJ_G0035203.1 mouse_genomes_project 9 44194609 44201244 - MGP_C57BL6NJ_P0092572 Foxr1 protein_coding protein_coding MGP_C57BL6NJ_T0093016.1 MGP_C57BL6NJ_G0035342.1 mouse_genomes_project 9 57132120 57218307 + MGP_C57BL6NJ_P0093016 Hmg20a protein_coding protein_coding MGP_C57BL6NJ_T0009442.1 MGP_C57BL6NJ_G0007587.1 mouse_genomes_project 9 61759007 61761677 + B930082K07Rik lincRNA lincRNA MGP_C57BL6NJ_T0092411.1 MGP_C57BL6NJ_G0035145.1 mouse_genomes_project 9 39332119 39333043 + MGP_C57BL6NJ_P0092411 Olfr229 protein_coding protein_coding MGP_C57BL6NJ_T0092968.1 MGP_C57BL6NJ_G0035331.1 mouse_genomes_project 9 55804897 55821591 + MGP_C57BL6NJ_P0092968 Fbxo22 protein_coding protein_coding MGP_C57BL6NJ_T0092969.1 MGP_C57BL6NJ_G0035331.1 mouse_genomes_project 9 55804930 55821584 + MGP_C57BL6NJ_P0092969 Fbxo22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092970.1 MGP_C57BL6NJ_G0035331.1 mouse_genomes_project 9 55804932 55821577 + MGP_C57BL6NJ_P0092970 Fbxo22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092971.1 MGP_C57BL6NJ_G0035331.1 mouse_genomes_project 9 55809607 55818182 + MGP_C57BL6NJ_P0092971 Fbxo22 protein_coding protein_coding MGP_C57BL6NJ_T0095024.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113120590 113188271 - MGP_C57BL6NJ_P0095024 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095025.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113121900 113188128 - MGP_C57BL6NJ_P0095025 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095026.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113121911 113188231 - MGP_C57BL6NJ_P0095026 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095027.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113121914 113188049 - MGP_C57BL6NJ_P0095027 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095028.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113134134 113188064 - MGP_C57BL6NJ_P0095028 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095029.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113134172 113188022 - MGP_C57BL6NJ_P0095029 Dag1 protein_coding protein_coding MGP_C57BL6NJ_T0095030.1 MGP_C57BL6NJ_G0035781.1 mouse_genomes_project 9 113172253 113188064 - Dag1 protein_coding retained_intron MGP_C57BL6NJ_T0101977.1 MGP_C57BL6NJ_G0040023.1 mouse_genomes_project 9 136787 136917 + Gm24918 snoRNA snoRNA MGP_C57BL6NJ_T0094550.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110087865 110098232 + MGP_C57BL6NJ_P0094550 Aste1 protein_coding protein_coding MGP_C57BL6NJ_T0094551.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110087873 110094617 + Aste1 protein_coding retained_intron MGP_C57BL6NJ_T0094552.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110087888 110097941 + Aste1 protein_coding retained_intron MGP_C57BL6NJ_T0094553.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110088017 110094087 + MGP_C57BL6NJ_P0094553 Aste1 protein_coding protein_coding MGP_C57BL6NJ_T0094554.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110089689 110097647 + MGP_C57BL6NJ_P0094554 Aste1 protein_coding protein_coding MGP_C57BL6NJ_T0094555.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110090287 110097802 + MGP_C57BL6NJ_P0094555 Aste1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094556.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110090287 110104692 + MGP_C57BL6NJ_P0094556 Aste1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094557.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110093261 110097802 + Aste1 protein_coding processed_transcript MGP_C57BL6NJ_T0094558.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110093948 110098232 + MGP_C57BL6NJ_P0094558 Aste1 protein_coding protein_coding MGP_C57BL6NJ_T0094562.1 MGP_C57BL6NJ_G0035707.1 mouse_genomes_project 9 110101620 110103732 + Aste1 protein_coding retained_intron MGP_C57BL6NJ_T0093194.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60754109 60942855 + MGP_C57BL6NJ_P0093194 Myo9a protein_coding protein_coding MGP_C57BL6NJ_T0093195.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60754109 60942855 + MGP_C57BL6NJ_P0093195 Myo9a protein_coding protein_coding MGP_C57BL6NJ_T0093196.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60754109 60942855 + MGP_C57BL6NJ_P0093196 Myo9a protein_coding protein_coding MGP_C57BL6NJ_T0093197.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60883841 60897148 + Myo9a protein_coding processed_transcript MGP_C57BL6NJ_T0093198.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60907596 60917340 + Myo9a protein_coding retained_intron MGP_C57BL6NJ_T0093199.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60916912 60922480 + Myo9a protein_coding retained_intron MGP_C57BL6NJ_T0093200.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60918165 60924403 + Myo9a protein_coding retained_intron MGP_C57BL6NJ_T0093201.1 MGP_C57BL6NJ_G0035399.1 mouse_genomes_project 9 60921727 60922770 + Myo9a protein_coding retained_intron MGP_C57BL6NJ_T0009501.1 MGP_C57BL6NJ_G0007631.1 mouse_genomes_project 9 101099058 101118693 - Gm19325 lincRNA lincRNA MGP_C57BL6NJ_T0091785.1 MGP_C57BL6NJ_G0034864.1 mouse_genomes_project 9 13336682 13824698 - MGP_C57BL6NJ_P0091785 Fat3 protein_coding protein_coding MGP_C57BL6NJ_T0091786.1 MGP_C57BL6NJ_G0034864.1 mouse_genomes_project 9 13336823 13555883 - MGP_C57BL6NJ_P0091786 Fat3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0016539.1 MGP_C57BL6NJ_G0014584.1 mouse_genomes_project 9 78038432 78042038 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091805.1 MGP_C57BL6NJ_G0034871.1 mouse_genomes_project 9 16096881 16104036 + MGP_C57BL6NJ_P0091805 Mbd3l1 protein_coding protein_coding MGP_C57BL6NJ_T0002499.1 MGP_C57BL6NJ_G0002387.1 mouse_genomes_project 9 34277561 34278714 - TEC TEC MGP_C57BL6NJ_T0095539.1 MGP_C57BL6NJ_G0035870.1 mouse_genomes_project 9 116614001 116621162 + MGP_C57BL6NJ_P0095539 Epm2aip1 protein_coding protein_coding MGP_C57BL6NJ_T0095540.1 MGP_C57BL6NJ_G0035870.1 mouse_genomes_project 9 116614017 116621166 + MGP_C57BL6NJ_P0095540 Epm2aip1 protein_coding protein_coding MGP_C57BL6NJ_T0095541.1 MGP_C57BL6NJ_G0035870.1 mouse_genomes_project 9 116616174 116619614 + Epm2aip1 protein_coding processed_transcript MGP_C57BL6NJ_T0005685.1 MGP_C57BL6NJ_G0004794.1 mouse_genomes_project 9 111000022 111001476 + 4930500F10Rik antisense antisense MGP_C57BL6NJ_T0091983.1 MGP_C57BL6NJ_G0034951.1 mouse_genomes_project 9 19757211 19765147 - MGP_C57BL6NJ_P0091983 Spc24 protein_coding protein_coding MGP_C57BL6NJ_T0093469.1 MGP_C57BL6NJ_G0035470.1 mouse_genomes_project 9 68390879 68447440 + MGP_C57BL6NJ_P0093469 Car12 protein_coding protein_coding MGP_C57BL6NJ_T0093470.1 MGP_C57BL6NJ_G0035470.1 mouse_genomes_project 9 68390920 68435069 + Car12 protein_coding retained_intron MGP_C57BL6NJ_T0093471.1 MGP_C57BL6NJ_G0035470.1 mouse_genomes_project 9 68390921 68428475 + Car12 protein_coding retained_intron MGP_C57BL6NJ_T0093472.1 MGP_C57BL6NJ_G0035470.1 mouse_genomes_project 9 68390923 68447437 + MGP_C57BL6NJ_P0093472 Car12 protein_coding protein_coding MGP_C57BL6NJ_T0093473.1 MGP_C57BL6NJ_G0035470.1 mouse_genomes_project 9 68428306 68444912 + MGP_C57BL6NJ_P0093473 Car12 protein_coding protein_coding MGP_C57BL6NJ_T0093363.1 MGP_C57BL6NJ_G0035439.1 mouse_genomes_project 9 66461145 66497670 - MGP_C57BL6NJ_P0093363 Hacd3 protein_coding protein_coding MGP_C57BL6NJ_T0005674.1 MGP_C57BL6NJ_G0004785.1 mouse_genomes_project 9 102759434 102760690 + Gm37637 antisense antisense MGP_C57BL6NJ_T0093379.1 MGP_C57BL6NJ_G0035449.1 mouse_genomes_project 9 66910257 66927132 + MGP_C57BL6NJ_P0093379 Rasl12 protein_coding protein_coding MGP_C57BL6NJ_T0093380.1 MGP_C57BL6NJ_G0035449.1 mouse_genomes_project 9 66910257 66924987 + MGP_C57BL6NJ_P0093380 Rasl12 protein_coding protein_coding MGP_C57BL6NJ_T0016507.1 MGP_C57BL6NJ_G0014552.1 mouse_genomes_project 9 41212077 41213057 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102012.1 MGP_C57BL6NJ_G0040058.1 mouse_genomes_project 9 65553827 65553926 + Snord16a snoRNA snoRNA MGP_C57BL6NJ_T0002495.1 MGP_C57BL6NJ_G0002383.1 mouse_genomes_project 9 31774127 31775475 + TEC TEC MGP_C57BL6NJ_T0092666.1 MGP_C57BL6NJ_G0035232.1 mouse_genomes_project 9 45276973 45623008 + MGP_C57BL6NJ_P0092666 Dscaml1 protein_coding protein_coding MGP_C57BL6NJ_T0100694.1 MGP_C57BL6NJ_G0038740.1 mouse_genomes_project 9 18336393 18336507 + Gm23316 snRNA snRNA MGP_C57BL6NJ_T0092413.1 MGP_C57BL6NJ_G0035147.1 mouse_genomes_project 9 39373926 39374859 - MGP_C57BL6NJ_P0092413 Olfr975 protein_coding protein_coding MGP_C57BL6NJ_T0095394.1 MGP_C57BL6NJ_G0035842.1 mouse_genomes_project 9 115500272 115517544 + MGP_C57BL6NJ_P0095394 Elp6 protein_coding protein_coding MGP_C57BL6NJ_T0095395.1 MGP_C57BL6NJ_G0035842.1 mouse_genomes_project 9 115500303 115518323 + MGP_C57BL6NJ_P0095395 Elp6 protein_coding protein_coding MGP_C57BL6NJ_T0095396.1 MGP_C57BL6NJ_G0035842.1 mouse_genomes_project 9 115500339 115515793 + MGP_C57BL6NJ_P0095396 Elp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095397.1 MGP_C57BL6NJ_G0035842.1 mouse_genomes_project 9 115500595 115510681 + MGP_C57BL6NJ_P0095397 Elp6 protein_coding protein_coding MGP_C57BL6NJ_T0095398.1 MGP_C57BL6NJ_G0035842.1 mouse_genomes_project 9 115504572 115508901 + Elp6 protein_coding retained_intron MGP_C57BL6NJ_T0095661.1 MGP_C57BL6NJ_G0035905.1 mouse_genomes_project 9 124501162 124582493 + MGP_C57BL6NJ_P0095661 Golga4 protein_coding protein_coding MGP_C57BL6NJ_T0095662.1 MGP_C57BL6NJ_G0035905.1 mouse_genomes_project 9 124501247 124582498 + MGP_C57BL6NJ_P0095662 Golga4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094033.1 MGP_C57BL6NJ_G0035595.1 mouse_genomes_project 9 90240265 90308247 + MGP_C57BL6NJ_P0094033 Cyb5r4 protein_coding protein_coding MGP_C57BL6NJ_T0094034.1 MGP_C57BL6NJ_G0035595.1 mouse_genomes_project 9 90240338 90294125 + Cyb5r4 protein_coding processed_transcript MGP_C57BL6NJ_T0094035.1 MGP_C57BL6NJ_G0035595.1 mouse_genomes_project 9 90247815 90268792 + Cyb5r4 protein_coding retained_intron MGP_C57BL6NJ_T0094036.1 MGP_C57BL6NJ_G0035595.1 mouse_genomes_project 9 90277438 90302056 + MGP_C57BL6NJ_P0094036 Cyb5r4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094037.1 MGP_C57BL6NJ_G0035595.1 mouse_genomes_project 9 90280612 90307854 + MGP_C57BL6NJ_P0094037 Cyb5r4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102024.1 MGP_C57BL6NJ_G0040070.1 mouse_genomes_project 9 79164289 79164409 - Gm22938 snoRNA snoRNA MGP_C57BL6NJ_T0005586.1 MGP_C57BL6NJ_G0004727.1 mouse_genomes_project 9 31286067 31294607 + Gm27201 antisense antisense MGP_C57BL6NJ_T0019057.1 MGP_C57BL6NJ_G0016155.1 mouse_genomes_project 9 116306411 116331439 + Gm10030 processed_transcript antisense MGP_C57BL6NJ_T0019058.1 MGP_C57BL6NJ_G0016155.1 mouse_genomes_project 9 116320458 116329935 + Gm10030 processed_transcript retained_intron MGP_C57BL6NJ_T0019059.1 MGP_C57BL6NJ_G0016155.1 mouse_genomes_project 9 116328220 116330240 + Gm10030 processed_transcript processed_transcript MGP_C57BL6NJ_T0095669.1 MGP_C57BL6NJ_G0035907.1 mouse_genomes_project 9 124957816 125101365 + MGP_C57BL6NJ_P0095669 Ctdspl protein_coding protein_coding MGP_C57BL6NJ_T0095670.1 MGP_C57BL6NJ_G0035907.1 mouse_genomes_project 9 124958089 125098016 + MGP_C57BL6NJ_P0095670 Ctdspl protein_coding protein_coding MGP_C57BL6NJ_T0095671.1 MGP_C57BL6NJ_G0035907.1 mouse_genomes_project 9 124961093 125089065 + Ctdspl protein_coding processed_transcript MGP_C57BL6NJ_T0095672.1 MGP_C57BL6NJ_G0035907.1 mouse_genomes_project 9 125088437 125098276 + Ctdspl protein_coding retained_intron MGP_C57BL6NJ_T0102040.1 MGP_C57BL6NJ_G0040086.1 mouse_genomes_project 9 107528405 107528535 - Gm22595 snoRNA snoRNA MGP_C57BL6NJ_T0093035.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889527 57892943 + MGP_C57BL6NJ_P0093035 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093036.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889527 57901513 + MGP_C57BL6NJ_P0093036 Man2c1 protein_coding protein_coding MGP_C57BL6NJ_T0093037.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889605 57895583 + MGP_C57BL6NJ_P0093037 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093038.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889605 57899501 + MGP_C57BL6NJ_P0093038 Man2c1 protein_coding protein_coding MGP_C57BL6NJ_T0093039.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889607 57893918 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093040.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889607 57900994 + MGP_C57BL6NJ_P0093040 Man2c1 protein_coding protein_coding MGP_C57BL6NJ_T0093041.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889614 57890091 + Man2c1 protein_coding processed_transcript MGP_C57BL6NJ_T0093042.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889623 57898185 + MGP_C57BL6NJ_P0093042 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093043.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889623 57900995 + MGP_C57BL6NJ_P0093043 Man2c1 protein_coding protein_coding MGP_C57BL6NJ_T0093044.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57889623 57896590 + MGP_C57BL6NJ_P0093044 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093045.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57890211 57893892 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093046.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57893730 57896317 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093047.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57894378 57895790 + MGP_C57BL6NJ_P0093047 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093048.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57895531 57896624 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093049.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57896829 57899519 + MGP_C57BL6NJ_P0093049 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093050.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57897212 57899202 + MGP_C57BL6NJ_P0093050 Man2c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093051.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57897654 57898784 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093052.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57898286 57901004 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093053.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57898286 57899503 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093054.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57898667 57899970 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093055.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57899068 57900998 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093056.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57899473 57901004 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0093057.1 MGP_C57BL6NJ_G0035351.1 mouse_genomes_project 9 57900168 57900998 + Man2c1 protein_coding retained_intron MGP_C57BL6NJ_T0092166.1 MGP_C57BL6NJ_G0035018.1 mouse_genomes_project 9 33968663 34033300 - MGP_C57BL6NJ_P0092166 St3gal4 protein_coding protein_coding MGP_C57BL6NJ_T0095695.1 MGP_C57BL6NJ_G0035913.1 mouse_genomes_project 9 125245487 125266242 - MGP_C57BL6NJ_P0095695 Slc22a14 protein_coding protein_coding MGP_C57BL6NJ_T0095696.1 MGP_C57BL6NJ_G0035913.1 mouse_genomes_project 9 125245488 125467588 - MGP_C57BL6NJ_P0095696 Slc22a14 protein_coding protein_coding MGP_C57BL6NJ_T0095697.1 MGP_C57BL6NJ_G0035913.1 mouse_genomes_project 9 125245700 125249685 - MGP_C57BL6NJ_P0095697 Slc22a14 protein_coding protein_coding MGP_C57BL6NJ_T0095698.1 MGP_C57BL6NJ_G0035913.1 mouse_genomes_project 9 125256998 125266197 - MGP_C57BL6NJ_P0095698 Slc22a14 protein_coding protein_coding MGP_C57BL6NJ_T0011332.1 MGP_C57BL6NJ_G0009417.1 mouse_genomes_project 9 63314533 63314610 - Mir5133 miRNA miRNA MGP_C57BL6NJ_T0100724.1 MGP_C57BL6NJ_G0038770.1 mouse_genomes_project 9 72492892 72493000 + Gm22229 snRNA snRNA MGP_C57BL6NJ_T0095731.1 MGP_C57BL6NJ_G0035929.1 mouse_genomes_project 9 126232231 126249320 - MGP_C57BL6NJ_P0095731 Cx3cr1 protein_coding protein_coding MGP_C57BL6NJ_T0092972.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55817374 55886068 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092973.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55817375 55886098 - MGP_C57BL6NJ_P0092973 Nrg4 protein_coding protein_coding MGP_C57BL6NJ_T0092974.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55818374 55843181 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092975.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55818450 55886060 - MGP_C57BL6NJ_P0092975 Nrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092976.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55818453 55930874 - MGP_C57BL6NJ_P0092976 Nrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092977.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55818454 55886045 - MGP_C57BL6NJ_P0092977 Nrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092978.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55818518 55886054 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092979.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55821384 55886045 - MGP_C57BL6NJ_P0092979 Nrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092980.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55841419 55886075 - MGP_C57BL6NJ_P0092980 Nrg4 protein_coding protein_coding MGP_C57BL6NJ_T0092981.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55842783 55930969 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092982.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55851153 55886060 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092983.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55860554 55886071 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092984.1 MGP_C57BL6NJ_G0035332.1 mouse_genomes_project 9 55910328 55929312 - Nrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092860.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51185030 51320398 - MGP_C57BL6NJ_P0092860 Sik2 protein_coding protein_coding MGP_C57BL6NJ_T0092861.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51185030 51320298 - MGP_C57BL6NJ_P0092861 Sik2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092862.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51185030 51320261 - MGP_C57BL6NJ_P0092862 Sik2 protein_coding protein_coding MGP_C57BL6NJ_T0092863.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51185030 51320261 - MGP_C57BL6NJ_P0092863 Sik2 protein_coding protein_coding MGP_C57BL6NJ_T0092864.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51222727 51320351 - Sik2 protein_coding processed_transcript MGP_C57BL6NJ_T0092865.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51225025 51320309 - Sik2 protein_coding processed_transcript MGP_C57BL6NJ_T0092866.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51228299 51320325 - Sik2 protein_coding retained_intron MGP_C57BL6NJ_T0092867.1 MGP_C57BL6NJ_G0035287.1 mouse_genomes_project 9 51306908 51320336 - Sik2 protein_coding retained_intron MGP_C57BL6NJ_T0016524.1 MGP_C57BL6NJ_G0014569.1 mouse_genomes_project 9 73990467 73990566 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095470.1 MGP_C57BL6NJ_G0035855.1 mouse_genomes_project 9 116092725 116096762 + MGP_C57BL6NJ_P0095470 Prss44 protein_coding protein_coding MGP_C57BL6NJ_T0095471.1 MGP_C57BL6NJ_G0035855.1 mouse_genomes_project 9 116092758 116103278 + MGP_C57BL6NJ_P0095471 Prss44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095472.1 MGP_C57BL6NJ_G0035855.1 mouse_genomes_project 9 116093213 116095292 + MGP_C57BL6NJ_P0095472 Prss44 protein_coding protein_coding MGP_C57BL6NJ_T0095473.1 MGP_C57BL6NJ_G0035855.1 mouse_genomes_project 9 116093979 116095711 + Prss44 protein_coding retained_intron MGP_C57BL6NJ_T0092390.1 MGP_C57BL6NJ_G0035130.1 mouse_genomes_project 9 38919436 38920491 - MGP_C57BL6NJ_P0092390 Olfr959 protein_coding protein_coding MGP_C57BL6NJ_T0094657.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111245839 111255490 + MGP_C57BL6NJ_P0094657 protein_coding protein_coding MGP_C57BL6NJ_T0094658.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111245955 111254471 + protein_coding processed_transcript MGP_C57BL6NJ_T0094659.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111246003 111258417 + MGP_C57BL6NJ_P0094659 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094660.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111248240 111249232 + protein_coding processed_transcript MGP_C57BL6NJ_T0094661.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111248315 111254916 + protein_coding retained_intron MGP_C57BL6NJ_T0094662.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111248328 111256320 + MGP_C57BL6NJ_P0094662 protein_coding protein_coding MGP_C57BL6NJ_T0094663.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111250079 111250835 + protein_coding processed_transcript MGP_C57BL6NJ_T0094664.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111250492 111255474 + MGP_C57BL6NJ_P0094664 protein_coding protein_coding MGP_C57BL6NJ_T0094665.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111254790 111255264 + protein_coding retained_intron MGP_C57BL6NJ_T0094666.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111255055 111255733 + MGP_C57BL6NJ_P0094666 protein_coding protein_coding MGP_C57BL6NJ_T0094667.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111255451 111257951 + MGP_C57BL6NJ_P0094667 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094668.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111255668 111256557 + protein_coding retained_intron MGP_C57BL6NJ_T0094669.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111255693 111257340 + MGP_C57BL6NJ_P0094669 protein_coding protein_coding MGP_C57BL6NJ_T0094670.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111256138 111256807 + protein_coding processed_transcript MGP_C57BL6NJ_T0094671.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111256265 111258097 + MGP_C57BL6NJ_P0094671 protein_coding protein_coding MGP_C57BL6NJ_T0094672.1 MGP_C57BL6NJ_G0035725.1 mouse_genomes_project 9 111256448 111257066 + protein_coding retained_intron MGP_C57BL6NJ_T0100703.1 MGP_C57BL6NJ_G0038749.1 mouse_genomes_project 9 44707253 44707371 + Gm26249 snRNA snRNA MGP_C57BL6NJ_T0019050.1 MGP_C57BL6NJ_G0016152.1 mouse_genomes_project 9 112951504 112958422 + Gm20529 processed_transcript processed_transcript MGP_C57BL6NJ_T0095809.1 MGP_C57BL6NJ_G0035948.1 mouse_genomes_project 9 128132835 128144545 + MGP_C57BL6NJ_P0095809 Zfp651 protein_coding protein_coding MGP_C57BL6NJ_T0093862.1 MGP_C57BL6NJ_G0035560.1 mouse_genomes_project 9 81085590 81086512 - MGP_C57BL6NJ_P0093862 Gm17324 protein_coding protein_coding MGP_C57BL6NJ_T0095793.1 MGP_C57BL6NJ_G0035946.1 mouse_genomes_project 9 128075610 128078143 + MGP_C57BL6NJ_P0095793 Deb1 protein_coding protein_coding MGP_C57BL6NJ_T0094529.1 MGP_C57BL6NJ_G0035702.1 mouse_genomes_project 9 109150910 109524704 + MGP_C57BL6NJ_P0094529 Cpne4 protein_coding protein_coding MGP_C57BL6NJ_T0094530.1 MGP_C57BL6NJ_G0035702.1 mouse_genomes_project 9 109170027 109524456 + MGP_C57BL6NJ_P0094530 Cpne4 protein_coding protein_coding MGP_C57BL6NJ_T0094531.1 MGP_C57BL6NJ_G0035702.1 mouse_genomes_project 9 109172793 109695400 + MGP_C57BL6NJ_P0094531 Cpne4 protein_coding protein_coding MGP_C57BL6NJ_T0094532.1 MGP_C57BL6NJ_G0035702.1 mouse_genomes_project 9 109173097 109695400 + MGP_C57BL6NJ_P0094532 Cpne4 protein_coding protein_coding MGP_C57BL6NJ_T0092007.1 MGP_C57BL6NJ_G0034964.1 mouse_genomes_project 9 20050160 20076147 - MGP_C57BL6NJ_P0092007 Elavl3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092008.1 MGP_C57BL6NJ_G0034964.1 mouse_genomes_project 9 20050166 20110259 - MGP_C57BL6NJ_P0092008 Elavl3 protein_coding protein_coding MGP_C57BL6NJ_T0091644.1 MGP_C57BL6NJ_G0034822.1 mouse_genomes_project 9 4804068 4834064 + MGP_C57BL6NJ_P0091644 Tmem123 protein_coding protein_coding MGP_C57BL6NJ_T0091645.1 MGP_C57BL6NJ_G0034822.1 mouse_genomes_project 9 4804176 4830779 + MGP_C57BL6NJ_P0091645 Tmem123 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091646.1 MGP_C57BL6NJ_G0034822.1 mouse_genomes_project 9 4804192 4834059 + MGP_C57BL6NJ_P0091646 Tmem123 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091639.1 MGP_C57BL6NJ_G0034818.1 mouse_genomes_project 9 4593025 4603075 + MGP_C57BL6NJ_P0091639 Mmp8 protein_coding protein_coding MGP_C57BL6NJ_T0093903.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82916973 83072712 + MGP_C57BL6NJ_P0093903 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093904.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82916980 82921952 + Myo6 protein_coding retained_intron MGP_C57BL6NJ_T0093905.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82916982 83072711 + MGP_C57BL6NJ_P0093905 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093906.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82917169 83069080 + MGP_C57BL6NJ_P0093906 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093907.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82974186 83069033 + MGP_C57BL6NJ_P0093907 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093908.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82974204 83072712 + MGP_C57BL6NJ_P0093908 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093909.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 82974212 83072712 + MGP_C57BL6NJ_P0093909 Myo6 protein_coding protein_coding MGP_C57BL6NJ_T0093910.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 83021496 83026117 + Myo6 protein_coding retained_intron MGP_C57BL6NJ_T0093911.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 83044837 83045932 + Myo6 protein_coding retained_intron MGP_C57BL6NJ_T0093912.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 83045704 83052035 + Myo6 protein_coding retained_intron MGP_C57BL6NJ_T0093913.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 83066753 83068778 + Myo6 protein_coding processed_transcript MGP_C57BL6NJ_T0093914.1 MGP_C57BL6NJ_G0035571.1 mouse_genomes_project 9 83067896 83069585 + Myo6 protein_coding retained_intron MGP_C57BL6NJ_T0101987.1 MGP_C57BL6NJ_G0040033.1 mouse_genomes_project 9 12709746 12709816 - Scarna9 snoRNA snoRNA MGP_C57BL6NJ_T0093160.1 MGP_C57BL6NJ_G0035386.1 mouse_genomes_project 9 59570496 59576939 - Rec114 protein_coding processed_transcript MGP_C57BL6NJ_T0093161.1 MGP_C57BL6NJ_G0035386.1 mouse_genomes_project 9 59570524 59581916 - Rec114 protein_coding processed_transcript MGP_C57BL6NJ_T0093162.1 MGP_C57BL6NJ_G0035386.1 mouse_genomes_project 9 59570527 59578014 - MGP_C57BL6NJ_P0093162 Rec114 protein_coding protein_coding MGP_C57BL6NJ_T0093163.1 MGP_C57BL6NJ_G0035386.1 mouse_genomes_project 9 59570588 59663641 - MGP_C57BL6NJ_P0093163 Rec114 protein_coding protein_coding MGP_C57BL6NJ_T0005720.1 MGP_C57BL6NJ_G0004821.1 mouse_genomes_project 9 127201297 127207770 - 4930593C16Rik antisense antisense MGP_C57BL6NJ_T0016555.1 MGP_C57BL6NJ_G0014600.1 mouse_genomes_project 9 85448875 85449203 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009521.1 MGP_C57BL6NJ_G0007649.1 mouse_genomes_project 9 112460786 112464740 - Lsmem2 lincRNA lincRNA MGP_C57BL6NJ_T0093859.1 MGP_C57BL6NJ_G0035558.1 mouse_genomes_project 9 81021971 81050894 + MGP_C57BL6NJ_P0093859 Ddx43 protein_coding protein_coding MGP_C57BL6NJ_T0095318.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971291 114983354 + MGP_C57BL6NJ_P0095318 Nme6 protein_coding protein_coding MGP_C57BL6NJ_T0095319.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971308 114982918 + MGP_C57BL6NJ_P0095319 Nme6 protein_coding protein_coding MGP_C57BL6NJ_T0095320.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971330 114972149 + Nme6 protein_coding retained_intron MGP_C57BL6NJ_T0095321.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971330 114983264 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0095322.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971340 114982427 + MGP_C57BL6NJ_P0095322 Nme6 protein_coding protein_coding MGP_C57BL6NJ_T0095323.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971345 114983048 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0095324.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971346 114983345 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0095325.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971366 114974184 + Nme6 protein_coding retained_intron MGP_C57BL6NJ_T0095326.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971445 114982975 + MGP_C57BL6NJ_P0095326 Nme6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095327.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971606 114982969 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0095328.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971750 114981968 + Nme6 protein_coding retained_intron MGP_C57BL6NJ_T0095329.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971752 114982936 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0095330.1 MGP_C57BL6NJ_G0035835.1 mouse_genomes_project 9 114971850 114983505 + Nme6 protein_coding processed_transcript MGP_C57BL6NJ_T0016528.1 MGP_C57BL6NJ_G0014573.1 mouse_genomes_project 9 74343441 74343886 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094325.1 MGP_C57BL6NJ_G0035662.1 mouse_genomes_project 9 103559879 103608055 - MGP_C57BL6NJ_P0094325 Esyt3 protein_coding protein_coding MGP_C57BL6NJ_T0094326.1 MGP_C57BL6NJ_G0035662.1 mouse_genomes_project 9 103567713 103572422 - Esyt3 protein_coding retained_intron MGP_C57BL6NJ_T0094327.1 MGP_C57BL6NJ_G0035662.1 mouse_genomes_project 9 103567757 103574729 - MGP_C57BL6NJ_P0094327 Esyt3 protein_coding protein_coding MGP_C57BL6NJ_T0094328.1 MGP_C57BL6NJ_G0035662.1 mouse_genomes_project 9 103582531 103588519 - Esyt3 protein_coding retained_intron MGP_C57BL6NJ_T0094329.1 MGP_C57BL6NJ_G0035662.1 mouse_genomes_project 9 103605135 103608094 - Esyt3 protein_coding retained_intron MGP_C57BL6NJ_T0016556.1 MGP_C57BL6NJ_G0014601.1 mouse_genomes_project 9 86041810 86041976 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095469.1 MGP_C57BL6NJ_G0035854.1 mouse_genomes_project 9 116070833 116076422 + MGP_C57BL6NJ_P0095469 Prss42 protein_coding protein_coding MGP_C57BL6NJ_T0093437.1 MGP_C57BL6NJ_G0035463.1 mouse_genomes_project 9 67651641 67656197 - MGP_C57BL6NJ_P0093437 Snx22 protein_coding protein_coding MGP_C57BL6NJ_T0093438.1 MGP_C57BL6NJ_G0035463.1 mouse_genomes_project 9 67653566 67656146 - MGP_C57BL6NJ_P0093438 Snx22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092384.1 MGP_C57BL6NJ_G0035124.1 mouse_genomes_project 9 38626698 38627664 - MGP_C57BL6NJ_P0092384 Olfr948 protein_coding protein_coding MGP_C57BL6NJ_T0011326.1 MGP_C57BL6NJ_G0009411.1 mouse_genomes_project 9 51417783 51417867 - Mir34b miRNA miRNA MGP_C57BL6NJ_T0098919.1 MGP_C57BL6NJ_G0036983.1 mouse_genomes_project 9 115207652 115210831 + pseudogene pseudogene MGP_C57BL6NJ_T0102002.1 MGP_C57BL6NJ_G0040048.1 mouse_genomes_project 9 40283431 40283517 + Snord14d snoRNA snoRNA MGP_C57BL6NJ_T0002598.1 MGP_C57BL6NJ_G0002485.1 mouse_genomes_project 9 112556702 112557902 + TEC TEC MGP_C57BL6NJ_T0093513.1 MGP_C57BL6NJ_G0035481.1 mouse_genomes_project 9 69609806 69771678 + MGP_C57BL6NJ_P0093513 Vps13c protein_coding protein_coding MGP_C57BL6NJ_T0093514.1 MGP_C57BL6NJ_G0035481.1 mouse_genomes_project 9 69609837 69763067 + MGP_C57BL6NJ_P0093514 Vps13c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091757.1 MGP_C57BL6NJ_G0034857.1 mouse_genomes_project 9 12663220 12683824 - MGP_C57BL6NJ_P0091757 4931406C07Rik protein_coding protein_coding MGP_C57BL6NJ_T0091758.1 MGP_C57BL6NJ_G0034857.1 mouse_genomes_project 9 12663220 12688641 - MGP_C57BL6NJ_P0091758 4931406C07Rik protein_coding protein_coding MGP_C57BL6NJ_T0091759.1 MGP_C57BL6NJ_G0034857.1 mouse_genomes_project 9 12663220 12688360 - MGP_C57BL6NJ_P0091759 4931406C07Rik protein_coding protein_coding MGP_C57BL6NJ_T0002610.1 MGP_C57BL6NJ_G0002497.1 mouse_genomes_project 9 115524046 115526633 - TEC TEC MGP_C57BL6NJ_T0092713.1 MGP_C57BL6NJ_G0035242.1 mouse_genomes_project 9 46143797 46146095 - MGP_C57BL6NJ_P0092713 Apoc3 protein_coding protein_coding MGP_C57BL6NJ_T0092714.1 MGP_C57BL6NJ_G0035242.1 mouse_genomes_project 9 46143915 46146134 - MGP_C57BL6NJ_P0092714 Apoc3 protein_coding protein_coding MGP_C57BL6NJ_T0092715.1 MGP_C57BL6NJ_G0035242.1 mouse_genomes_project 9 46144062 46146471 - MGP_C57BL6NJ_P0092715 Apoc3 protein_coding protein_coding MGP_C57BL6NJ_T0092716.1 MGP_C57BL6NJ_G0035242.1 mouse_genomes_project 9 46145271 46146304 - MGP_C57BL6NJ_P0092716 Apoc3 protein_coding protein_coding MGP_C57BL6NJ_T0016615.1 MGP_C57BL6NJ_G0014660.1 mouse_genomes_project 9 105871217 105872070 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091782.1 MGP_C57BL6NJ_G0034862.1 mouse_genomes_project 9 13123608 13153579 + MGP_C57BL6NJ_P0091782 Slc36a4 protein_coding protein_coding MGP_C57BL6NJ_T0094330.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103636136 103692572 - MGP_C57BL6NJ_P0094330 Mras protein_coding protein_coding MGP_C57BL6NJ_T0094331.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103638644 103692072 - MGP_C57BL6NJ_P0094331 Mras protein_coding protein_coding MGP_C57BL6NJ_T0094332.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103638695 103681079 - MGP_C57BL6NJ_P0094332 Mras protein_coding protein_coding MGP_C57BL6NJ_T0094333.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103640449 103645412 - Mras protein_coding retained_intron MGP_C57BL6NJ_T0094334.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103643556 103653404 - Mras protein_coding retained_intron MGP_C57BL6NJ_T0094335.1 MGP_C57BL6NJ_G0035663.1 mouse_genomes_project 9 103643717 103673665 - MGP_C57BL6NJ_P0094335 Mras protein_coding protein_coding MGP_C57BL6NJ_T0009526.1 MGP_C57BL6NJ_G0007653.1 mouse_genomes_project 9 114880921 114926750 - lincRNA lincRNA MGP_C57BL6NJ_T0009527.1 MGP_C57BL6NJ_G0007653.1 mouse_genomes_project 9 114880922 114888141 - lincRNA lincRNA MGP_C57BL6NJ_T0009528.1 MGP_C57BL6NJ_G0007653.1 mouse_genomes_project 9 114880928 114888778 - lincRNA lincRNA MGP_C57BL6NJ_T0009529.1 MGP_C57BL6NJ_G0007653.1 mouse_genomes_project 9 114880928 114888720 - lincRNA lincRNA MGP_C57BL6NJ_T0009530.1 MGP_C57BL6NJ_G0007653.1 mouse_genomes_project 9 114888047 114926750 - lincRNA lincRNA MGP_C57BL6NJ_T0009474.1 MGP_C57BL6NJ_G0007613.1 mouse_genomes_project 9 85165600 85168793 + 1700063H06Rik lincRNA lincRNA MGP_C57BL6NJ_T0095825.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518084 128539731 + MGP_C57BL6NJ_P0095825 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095826.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518092 128575124 + MGP_C57BL6NJ_P0095826 Snrk protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095827.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518111 128539839 + MGP_C57BL6NJ_P0095827 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095828.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518140 128575129 + MGP_C57BL6NJ_P0095828 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095829.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518148 128570574 + MGP_C57BL6NJ_P0095829 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095830.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518160 128539686 + MGP_C57BL6NJ_P0095830 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095831.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518176 128573585 + MGP_C57BL6NJ_P0095831 Snrk protein_coding protein_coding MGP_C57BL6NJ_T0095832.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128518553 128539531 + Snrk protein_coding processed_transcript MGP_C57BL6NJ_T0095833.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128564261 128570576 + Snrk protein_coding retained_intron MGP_C57BL6NJ_T0095834.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128568053 128570675 + Snrk protein_coding retained_intron MGP_C57BL6NJ_T0095835.1 MGP_C57BL6NJ_G0035958.1 mouse_genomes_project 9 128572292 128573016 + Snrk protein_coding processed_transcript MGP_C57BL6NJ_T0016602.1 MGP_C57BL6NJ_G0014647.1 mouse_genomes_project 9 101299382 101300478 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011999.1 MGP_C57BL6NJ_G0010084.1 mouse_genomes_project 9 19675323 19675507 + Gm27373 misc_RNA misc_RNA MGP_C57BL6NJ_T0100736.1 MGP_C57BL6NJ_G0038782.1 mouse_genomes_project 9 91819662 91819778 - Gm22985 snRNA snRNA MGP_C57BL6NJ_T0092574.1 MGP_C57BL6NJ_G0035205.1 mouse_genomes_project 9 44248643 44279419 + MGP_C57BL6NJ_P0092574 Bcl9l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011294.1 MGP_C57BL6NJ_G0009379.1 mouse_genomes_project 9 1212007 1212074 - Gm23992 miRNA miRNA MGP_C57BL6NJ_T0092331.1 MGP_C57BL6NJ_G0035077.1 mouse_genomes_project 9 37291011 37292319 + MGP_C57BL6NJ_P0092331 Olfr888 protein_coding protein_coding MGP_C57BL6NJ_T0101996.1 MGP_C57BL6NJ_G0040042.1 mouse_genomes_project 9 32773746 32773877 + Gm25439 snoRNA snoRNA MGP_C57BL6NJ_T0009510.1 MGP_C57BL6NJ_G0007640.1 mouse_genomes_project 9 106808892 106817670 + Gm26846 lincRNA lincRNA MGP_C57BL6NJ_T0095143.1 MGP_C57BL6NJ_G0035798.1 mouse_genomes_project 9 113547925 113548959 - Ndufaf3 protein_coding retained_intron MGP_C57BL6NJ_T0095144.1 MGP_C57BL6NJ_G0035798.1 mouse_genomes_project 9 113548007 113548976 - MGP_C57BL6NJ_P0095144 Ndufaf3 protein_coding protein_coding MGP_C57BL6NJ_T0095145.1 MGP_C57BL6NJ_G0035798.1 mouse_genomes_project 9 113548225 113548979 - Ndufaf3 protein_coding retained_intron MGP_C57BL6NJ_T0093775.1 MGP_C57BL6NJ_G0035534.1 mouse_genomes_project 9 77966040 77978082 + MGP_C57BL6NJ_P0093775 Lysmd2 protein_coding protein_coding MGP_C57BL6NJ_T0094627.1 MGP_C57BL6NJ_G0035719.1 mouse_genomes_project 9 111050908 111123184 + MGP_C57BL6NJ_P0094627 Poc1a protein_coding protein_coding MGP_C57BL6NJ_T0094628.1 MGP_C57BL6NJ_G0035719.1 mouse_genomes_project 9 111051227 111123197 + MGP_C57BL6NJ_P0094628 Poc1a protein_coding protein_coding MGP_C57BL6NJ_T0094629.1 MGP_C57BL6NJ_G0035719.1 mouse_genomes_project 9 111060676 111123826 + Poc1a protein_coding processed_transcript MGP_C57BL6NJ_T0094630.1 MGP_C57BL6NJ_G0035719.1 mouse_genomes_project 9 111070591 111123182 + Poc1a protein_coding processed_transcript MGP_C57BL6NJ_T0094631.1 MGP_C57BL6NJ_G0035719.1 mouse_genomes_project 9 111099600 111123183 + Poc1a protein_coding processed_transcript MGP_C57BL6NJ_T0094087.1 MGP_C57BL6NJ_G0035610.1 mouse_genomes_project 9 93147398 93153262 - MGP_C57BL6NJ_P0094087 Tmed3 protein_coding protein_coding MGP_C57BL6NJ_T0094088.1 MGP_C57BL6NJ_G0035610.1 mouse_genomes_project 9 93151438 93153017 - Tmed3 protein_coding retained_intron MGP_C57BL6NJ_T0092421.1 MGP_C57BL6NJ_G0035155.1 mouse_genomes_project 9 39525593 39526538 - MGP_C57BL6NJ_P0092421 Olfr984 protein_coding protein_coding MGP_C57BL6NJ_T0100754.1 MGP_C57BL6NJ_G0038800.1 mouse_genomes_project 9 120519518 120519622 + Gm23889 snRNA snRNA MGP_C57BL6NJ_T0092427.1 MGP_C57BL6NJ_G0035160.1 mouse_genomes_project 9 39708755 39733496 + MGP_C57BL6NJ_P0092427 Scn3b protein_coding protein_coding MGP_C57BL6NJ_T0092428.1 MGP_C57BL6NJ_G0035160.1 mouse_genomes_project 9 39708880 39720372 + Scn3b protein_coding processed_transcript MGP_C57BL6NJ_T0092429.1 MGP_C57BL6NJ_G0035160.1 mouse_genomes_project 9 39708891 39719029 + Scn3b protein_coding retained_intron MGP_C57BL6NJ_T0092430.1 MGP_C57BL6NJ_G0035160.1 mouse_genomes_project 9 39709040 39718275 + Scn3b protein_coding retained_intron MGP_C57BL6NJ_T0092431.1 MGP_C57BL6NJ_G0035160.1 mouse_genomes_project 9 39709298 39730281 + MGP_C57BL6NJ_P0092431 Scn3b protein_coding protein_coding MGP_C57BL6NJ_T0009518.1 MGP_C57BL6NJ_G0007647.1 mouse_genomes_project 9 112092652 112095430 + 1700039M15Rik lincRNA lincRNA MGP_C57BL6NJ_T0091652.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4880397 4908295 - MGP_C57BL6NJ_P0091652 Birc3 protein_coding protein_coding MGP_C57BL6NJ_T0091653.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4880961 4892721 - MGP_C57BL6NJ_P0091653 Birc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0091654.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4881392 4891732 - MGP_C57BL6NJ_P0091654 Birc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091655.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4887442 4908254 - MGP_C57BL6NJ_P0091655 Birc3 protein_coding protein_coding MGP_C57BL6NJ_T0091656.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4892196 4908441 - MGP_C57BL6NJ_P0091656 Birc3 protein_coding protein_coding MGP_C57BL6NJ_T0091657.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4892215 4908457 - MGP_C57BL6NJ_P0091657 Birc3 protein_coding protein_coding MGP_C57BL6NJ_T0091658.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4898688 4908128 - Birc3 protein_coding processed_transcript MGP_C57BL6NJ_T0091659.1 MGP_C57BL6NJ_G0034824.1 mouse_genomes_project 9 4901143 4908168 - Birc3 protein_coding processed_transcript MGP_C57BL6NJ_T0094149.1 MGP_C57BL6NJ_G0035621.1 mouse_genomes_project 9 95934210 95940657 + MGP_C57BL6NJ_P0094149 Plscr2 protein_coding protein_coding MGP_C57BL6NJ_T0094150.1 MGP_C57BL6NJ_G0035621.1 mouse_genomes_project 9 95934452 95957280 + MGP_C57BL6NJ_P0094150 Plscr2 protein_coding protein_coding MGP_C57BL6NJ_T0016538.1 MGP_C57BL6NJ_G0014583.1 mouse_genomes_project 9 77439108 77440331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012007.1 MGP_C57BL6NJ_G0010092.1 mouse_genomes_project 9 91857557 91857847 + Gm26461 misc_RNA misc_RNA MGP_C57BL6NJ_T0019005.1 MGP_C57BL6NJ_G0016135.1 mouse_genomes_project 9 65392582 65396786 - 1700055C04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0100701.1 MGP_C57BL6NJ_G0038747.1 mouse_genomes_project 9 43617180 43617285 - Gm23326 snRNA snRNA MGP_C57BL6NJ_T0092655.1 MGP_C57BL6NJ_G0035227.1 mouse_genomes_project 9 45004752 45017597 + BC049352 protein_coding lincRNA MGP_C57BL6NJ_T0092656.1 MGP_C57BL6NJ_G0035227.1 mouse_genomes_project 9 45004779 45079666 + BC049352 protein_coding lincRNA MGP_C57BL6NJ_T0092657.1 MGP_C57BL6NJ_G0035227.1 mouse_genomes_project 9 45020394 45079666 + BC049352 protein_coding lincRNA MGP_C57BL6NJ_T0092658.1 MGP_C57BL6NJ_G0035227.1 mouse_genomes_project 9 45020394 45079627 + MGP_C57BL6NJ_P0092658 BC049352 protein_coding protein_coding MGP_C57BL6NJ_T0019012.1 MGP_C57BL6NJ_G0016139.1 mouse_genomes_project 9 77108400 77116942 + Gm16551 processed_transcript lincRNA MGP_C57BL6NJ_T0019013.1 MGP_C57BL6NJ_G0016139.1 mouse_genomes_project 9 77112508 77124147 + Gm16551 processed_transcript lincRNA MGP_C57BL6NJ_T0019014.1 MGP_C57BL6NJ_G0016139.1 mouse_genomes_project 9 77112574 77113439 + Gm16551 processed_transcript retained_intron MGP_C57BL6NJ_T0019015.1 MGP_C57BL6NJ_G0016139.1 mouse_genomes_project 9 77112597 77116941 + Gm16551 processed_transcript lincRNA MGP_C57BL6NJ_T0019016.1 MGP_C57BL6NJ_G0016139.1 mouse_genomes_project 9 77113066 77115273 + Gm16551 processed_transcript retained_intron MGP_C57BL6NJ_T0002553.1 MGP_C57BL6NJ_G0002440.1 mouse_genomes_project 9 94896599 94899032 - TEC TEC MGP_C57BL6NJ_T0005688.1 MGP_C57BL6NJ_G0004797.1 mouse_genomes_project 9 111447724 111451758 + Gm28111 antisense antisense MGP_C57BL6NJ_T0093276.1 MGP_C57BL6NJ_G0035415.1 mouse_genomes_project 9 64070260 64092817 - MGP_C57BL6NJ_P0093276 Fem1b protein_coding protein_coding MGP_C57BL6NJ_T0093779.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78383816 78525873 + MGP_C57BL6NJ_P0093779 Hmgcll1 protein_coding protein_coding MGP_C57BL6NJ_T0093780.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78383816 78525873 + MGP_C57BL6NJ_P0093780 Hmgcll1 protein_coding protein_coding MGP_C57BL6NJ_T0093781.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78383945 78523710 + MGP_C57BL6NJ_P0093781 Hmgcll1 protein_coding protein_coding MGP_C57BL6NJ_T0093782.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78383975 78452789 + Hmgcll1 protein_coding retained_intron MGP_C57BL6NJ_T0093783.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78383976 78447179 + Hmgcll1 protein_coding retained_intron MGP_C57BL6NJ_T0093784.1 MGP_C57BL6NJ_G0035537.1 mouse_genomes_project 9 78384016 78523621 + MGP_C57BL6NJ_P0093784 Hmgcll1 protein_coding protein_coding MGP_C57BL6NJ_T0098918.1 MGP_C57BL6NJ_G0036982.1 mouse_genomes_project 9 103059972 103064635 - pseudogene pseudogene MGP_C57BL6NJ_T0092626.1 MGP_C57BL6NJ_G0035215.1 mouse_genomes_project 9 44725414 44734611 - MGP_C57BL6NJ_P0092626 Atp5l protein_coding protein_coding MGP_C57BL6NJ_T0094233.1 MGP_C57BL6NJ_G0035638.1 mouse_genomes_project 9 100466491 100473315 - MGP_C57BL6NJ_P0094233 protein_coding protein_coding MGP_C57BL6NJ_T0094234.1 MGP_C57BL6NJ_G0035638.1 mouse_genomes_project 9 100468613 100473293 - protein_coding processed_transcript MGP_C57BL6NJ_T0099533.1 MGP_C57BL6NJ_G0037584.1 mouse_genomes_project 9 91729442 91731595 - Gm28229 sense_intronic sense_intronic MGP_C57BL6NJ_T0012008.1 MGP_C57BL6NJ_G0010093.1 mouse_genomes_project 9 93502063 93502331 + Gm23759 misc_RNA misc_RNA MGP_C57BL6NJ_T0092569.1 MGP_C57BL6NJ_G0035200.1 mouse_genomes_project 9 44163203 44166911 - MGP_C57BL6NJ_P0092569 Trappc4 protein_coding protein_coding MGP_C57BL6NJ_T0093326.1 MGP_C57BL6NJ_G0035428.1 mouse_genomes_project 9 65551791 65556966 + MGP_C57BL6NJ_P0093326 Rpl4 protein_coding protein_coding MGP_C57BL6NJ_T0094483.1 MGP_C57BL6NJ_G0035694.1 mouse_genomes_project 9 108033258 108254927 - MGP_C57BL6NJ_P0094483 Tmem108 protein_coding protein_coding MGP_C57BL6NJ_T0094484.1 MGP_C57BL6NJ_G0035694.1 mouse_genomes_project 9 108034089 108325885 - MGP_C57BL6NJ_P0094484 Tmem108 protein_coding protein_coding MGP_C57BL6NJ_T0094485.1 MGP_C57BL6NJ_G0035694.1 mouse_genomes_project 9 108034747 108325842 - MGP_C57BL6NJ_P0094485 Tmem108 protein_coding protein_coding MGP_C57BL6NJ_T0094486.1 MGP_C57BL6NJ_G0035694.1 mouse_genomes_project 9 108034750 108043923 - Tmem108 protein_coding retained_intron MGP_C57BL6NJ_T0094487.1 MGP_C57BL6NJ_G0035694.1 mouse_genomes_project 9 108316298 108325838 - Tmem108 protein_coding retained_intron MGP_C57BL6NJ_T0005678.1 MGP_C57BL6NJ_G0004789.1 mouse_genomes_project 9 108110576 108119378 + 4932413F04Rik antisense antisense MGP_C57BL6NJ_T0092337.1 MGP_C57BL6NJ_G0035083.1 mouse_genomes_project 9 37465544 37466486 + MGP_C57BL6NJ_P0092337 Olfr143 protein_coding protein_coding MGP_C57BL6NJ_T0100693.1 MGP_C57BL6NJ_G0038739.1 mouse_genomes_project 9 18105108 18105204 - Gm25425 snRNA snRNA MGP_C57BL6NJ_T0092893.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 53943302 54043764 - MGP_C57BL6NJ_P0092893 Atm protein_coding protein_coding MGP_C57BL6NJ_T0092894.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 53943899 54043743 - MGP_C57BL6NJ_P0092894 Atm protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092895.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 53944258 53946714 - Atm protein_coding retained_intron MGP_C57BL6NJ_T0092896.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 53949528 53957771 - MGP_C57BL6NJ_P0092896 Atm protein_coding protein_coding MGP_C57BL6NJ_T0092897.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 54028060 54043697 - Atm protein_coding retained_intron MGP_C57BL6NJ_T0092898.1 MGP_C57BL6NJ_G0035303.1 mouse_genomes_project 9 54033408 54043632 - MGP_C57BL6NJ_P0092898 Atm protein_coding protein_coding MGP_C57BL6NJ_T0005700.1 MGP_C57BL6NJ_G0004804.1 mouse_genomes_project 9 112442809 112454406 - Gm16343 antisense antisense MGP_C57BL6NJ_T0094729.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111723751 112083342 - MGP_C57BL6NJ_P0094729 Dock3 protein_coding protein_coding MGP_C57BL6NJ_T0094730.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111724032 111746243 - MGP_C57BL6NJ_P0094730 Dock3 protein_coding protein_coding MGP_C57BL6NJ_T0094731.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111727702 111734363 - MGP_C57BL6NJ_P0094731 Dock3 protein_coding protein_coding MGP_C57BL6NJ_T0094732.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111739306 111741367 - Dock3 protein_coding processed_transcript MGP_C57BL6NJ_T0094733.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111744600 111746545 - Dock3 protein_coding retained_intron MGP_C57BL6NJ_T0094734.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111747738 111789155 - MGP_C57BL6NJ_P0094734 Dock3 protein_coding protein_coding MGP_C57BL6NJ_T0094735.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111780726 111804997 - MGP_C57BL6NJ_P0094735 Dock3 protein_coding protein_coding MGP_C57BL6NJ_T0094736.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111868413 111870868 - Dock3 protein_coding retained_intron MGP_C57BL6NJ_T0094737.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111899400 112083301 - Dock3 protein_coding retained_intron MGP_C57BL6NJ_T0094738.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111928368 112083289 - Dock3 protein_coding retained_intron MGP_C57BL6NJ_T0094739.1 MGP_C57BL6NJ_G0035740.1 mouse_genomes_project 9 111958850 112083015 - Dock3 protein_coding retained_intron MGP_C57BL6NJ_T0094697.1 MGP_C57BL6NJ_G0035732.1 mouse_genomes_project 9 111370201 111372843 - MGP_C57BL6NJ_P0094697 Iqcf4 protein_coding protein_coding MGP_C57BL6NJ_T0094305.1 MGP_C57BL6NJ_G0035656.1 mouse_genomes_project 9 103163367 103164608 + MGP_C57BL6NJ_P0094305 Foxl2 protein_coding protein_coding MGP_C57BL6NJ_T0092310.1 MGP_C57BL6NJ_G0035061.1 mouse_genomes_project 9 36739639 36750065 - MGP_C57BL6NJ_P0092310 Spa17 protein_coding protein_coding MGP_C57BL6NJ_T0002595.1 MGP_C57BL6NJ_G0002482.1 mouse_genomes_project 9 110437990 110438615 + TEC TEC MGP_C57BL6NJ_T0095229.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113933491 113964807 + MGP_C57BL6NJ_P0095229 Col7a1 protein_coding protein_coding MGP_C57BL6NJ_T0095230.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113933650 113964807 + MGP_C57BL6NJ_P0095230 Col7a1 protein_coding protein_coding MGP_C57BL6NJ_T0095231.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113934392 113935320 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0095232.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113947568 113948247 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0095233.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113949597 113960147 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0095234.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113955267 113957121 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0095235.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113962585 113964435 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0095236.1 MGP_C57BL6NJ_G0035811.1 mouse_genomes_project 9 113962818 113963848 + Col7a1 protein_coding retained_intron MGP_C57BL6NJ_T0093012.1 MGP_C57BL6NJ_G0035341.1 mouse_genomes_project 9 56897626 56944795 - MGP_C57BL6NJ_P0093012 Peak1 protein_coding protein_coding MGP_C57BL6NJ_T0093013.1 MGP_C57BL6NJ_G0035341.1 mouse_genomes_project 9 56901629 57131544 - MGP_C57BL6NJ_P0093013 Peak1 protein_coding protein_coding MGP_C57BL6NJ_T0093014.1 MGP_C57BL6NJ_G0035341.1 mouse_genomes_project 9 56962038 57131519 - MGP_C57BL6NJ_P0093014 Peak1 protein_coding protein_coding MGP_C57BL6NJ_T0093015.1 MGP_C57BL6NJ_G0035341.1 mouse_genomes_project 9 57130175 57131527 - Peak1 protein_coding retained_intron MGP_C57BL6NJ_T0092425.1 MGP_C57BL6NJ_G0035159.1 mouse_genomes_project 9 39626676 39650967 + MGP_C57BL6NJ_P0092425 Zfp202 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092426.1 MGP_C57BL6NJ_G0035159.1 mouse_genomes_project 9 39644655 39649232 + MGP_C57BL6NJ_P0092426 Zfp202 protein_coding protein_coding MGP_C57BL6NJ_T0094698.1 MGP_C57BL6NJ_G0035733.1 mouse_genomes_project 9 111431470 111432564 + MGP_C57BL6NJ_P0094698 Iqcf6 protein_coding protein_coding MGP_C57BL6NJ_T0093165.1 MGP_C57BL6NJ_G0035388.1 mouse_genomes_project 9 59801422 59972091 - MGP_C57BL6NJ_P0093165 Neo1 protein_coding protein_coding MGP_C57BL6NJ_T0091755.1 MGP_C57BL6NJ_G0034855.1 mouse_genomes_project 9 12619197 12639289 + MGP_C57BL6NJ_P0091755 Vstm5 protein_coding protein_coding MGP_C57BL6NJ_T0005671.1 MGP_C57BL6NJ_G0004783.1 mouse_genomes_project 9 101419766 101443542 + Gm15891 antisense antisense MGP_C57BL6NJ_T0016628.1 MGP_C57BL6NJ_G0014673.1 mouse_genomes_project 9 113272681 113273045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094501.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108637719 108639668 + Acad11 protein_coding retained_intron MGP_C57BL6NJ_T0094502.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108637758 108707872 + MGP_C57BL6NJ_P0094502 Acad11 protein_coding protein_coding MGP_C57BL6NJ_T0094504.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108666217 108693039 + Acad11 protein_coding processed_transcript MGP_C57BL6NJ_T0094505.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108672511 108687554 + MGP_C57BL6NJ_P0094505 Acad11 protein_coding protein_coding MGP_C57BL6NJ_T0094508.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108689914 108693377 + Acad11 protein_coding retained_intron MGP_C57BL6NJ_T0094509.1 MGP_C57BL6NJ_G0035698.1 mouse_genomes_project 9 108705014 108708195 + Acad11 protein_coding processed_transcript MGP_C57BL6NJ_T0095201.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113838566 113865199 + MGP_C57BL6NJ_P0095201 Celsr3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095202.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113838566 113865192 + MGP_C57BL6NJ_P0095202 Celsr3 protein_coding protein_coding MGP_C57BL6NJ_T0095203.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113843986 113845067 + MGP_C57BL6NJ_P0095203 Celsr3 protein_coding protein_coding MGP_C57BL6NJ_T0095204.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113846718 113848820 + Celsr3 protein_coding retained_intron MGP_C57BL6NJ_T0095205.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113854855 113855472 + Celsr3 protein_coding retained_intron MGP_C57BL6NJ_T0095206.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113855481 113856167 + Celsr3 protein_coding retained_intron MGP_C57BL6NJ_T0095207.1 MGP_C57BL6NJ_G0035807.1 mouse_genomes_project 9 113855499 113860981 + MGP_C57BL6NJ_P0095207 Celsr3 protein_coding protein_coding MGP_C57BL6NJ_T0002547.1 MGP_C57BL6NJ_G0002434.1 mouse_genomes_project 9 92291071 92293476 - TEC TEC MGP_C57BL6NJ_T0094085.1 MGP_C57BL6NJ_G0035609.1 mouse_genomes_project 9 93027688 93065434 - MGP_C57BL6NJ_P0094085 AF529169 protein_coding protein_coding MGP_C57BL6NJ_T0094086.1 MGP_C57BL6NJ_G0035609.1 mouse_genomes_project 9 93031573 93044832 - MGP_C57BL6NJ_P0094086 AF529169 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100739.1 MGP_C57BL6NJ_G0038785.1 mouse_genomes_project 9 95441704 95441809 + Gm26101 snRNA snRNA MGP_C57BL6NJ_T0091783.1 MGP_C57BL6NJ_G0034863.1 mouse_genomes_project 9 13242267 13299911 - MGP_C57BL6NJ_P0091783 Mtnr1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0091784.1 MGP_C57BL6NJ_G0034863.1 mouse_genomes_project 9 13286327 13299815 - MGP_C57BL6NJ_P0091784 Mtnr1b protein_coding protein_coding MGP_C57BL6NJ_T0092662.1 MGP_C57BL6NJ_G0035229.1 mouse_genomes_project 9 45160824 45189154 + MGP_C57BL6NJ_P0092662 Tmprss13 protein_coding protein_coding MGP_C57BL6NJ_T0002612.1 MGP_C57BL6NJ_G0002499.1 mouse_genomes_project 9 115762156 115764243 + TEC TEC MGP_C57BL6NJ_T0092964.1 MGP_C57BL6NJ_G0035329.1 mouse_genomes_project 9 55608395 55630831 - MGP_C57BL6NJ_P0092964 Chrnb4 protein_coding protein_coding MGP_C57BL6NJ_T0092316.1 MGP_C57BL6NJ_G0035064.1 mouse_genomes_project 9 36798641 36807864 - MGP_C57BL6NJ_P0092316 Panx3 protein_coding protein_coding MGP_C57BL6NJ_T0092317.1 MGP_C57BL6NJ_G0035064.1 mouse_genomes_project 9 36802862 36807815 - MGP_C57BL6NJ_P0092317 Panx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093386.1 MGP_C57BL6NJ_G0035452.1 mouse_genomes_project 9 66978442 67011199 + MGP_C57BL6NJ_P0093386 Spg21 protein_coding protein_coding MGP_C57BL6NJ_T0102015.1 MGP_C57BL6NJ_G0040061.1 mouse_genomes_project 9 65555527 65555598 + Gm22455 snoRNA snoRNA MGP_C57BL6NJ_T0095502.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116348334 116371035 + MGP_C57BL6NJ_P0095502 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095503.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116348355 116373309 + MGP_C57BL6NJ_P0095503 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095504.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116348355 116352309 + MGP_C57BL6NJ_P0095504 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095505.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116348355 116371035 + MGP_C57BL6NJ_P0095505 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095506.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116348373 116354854 + MGP_C57BL6NJ_P0095506 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095507.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116352261 116357266 + MGP_C57BL6NJ_P0095507 Ltf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095508.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116354231 116355349 + Ltf protein_coding retained_intron MGP_C57BL6NJ_T0095509.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116356967 116358339 + Ltf protein_coding retained_intron MGP_C57BL6NJ_T0095510.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116357205 116366350 + MGP_C57BL6NJ_P0095510 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0095511.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116361670 116371019 + MGP_C57BL6NJ_P0095511 Ltf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095512.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116366180 116371019 + Ltf protein_coding retained_intron MGP_C57BL6NJ_T0095513.1 MGP_C57BL6NJ_G0035866.1 mouse_genomes_project 9 116369346 116372868 + MGP_C57BL6NJ_P0095513 Ltf protein_coding protein_coding MGP_C57BL6NJ_T0005661.1 MGP_C57BL6NJ_G0004777.1 mouse_genomes_project 9 99883534 99902169 - Gm16794 antisense antisense MGP_C57BL6NJ_T0005662.1 MGP_C57BL6NJ_G0004777.1 mouse_genomes_project 9 99884420 99897417 - Gm16794 antisense antisense MGP_C57BL6NJ_T0005663.1 MGP_C57BL6NJ_G0004777.1 mouse_genomes_project 9 99886471 99897426 - Gm16794 antisense antisense MGP_C57BL6NJ_T0005664.1 MGP_C57BL6NJ_G0004777.1 mouse_genomes_project 9 99887158 99898175 - Gm16794 antisense antisense MGP_C57BL6NJ_T0095514.1 MGP_C57BL6NJ_G0035867.1 mouse_genomes_project 9 116385005 116387790 - MGP_C57BL6NJ_P0095514 Ccrl2 protein_coding protein_coding MGP_C57BL6NJ_T0095515.1 MGP_C57BL6NJ_G0035867.1 mouse_genomes_project 9 116385351 116388039 - MGP_C57BL6NJ_P0095515 Ccrl2 protein_coding protein_coding MGP_C57BL6NJ_T0095516.1 MGP_C57BL6NJ_G0035867.1 mouse_genomes_project 9 116386549 116387766 - MGP_C57BL6NJ_P0095516 Ccrl2 protein_coding protein_coding MGP_C57BL6NJ_T0092419.1 MGP_C57BL6NJ_G0035153.1 mouse_genomes_project 9 39496628 39497594 + MGP_C57BL6NJ_P0092419 Olfr982 protein_coding protein_coding MGP_C57BL6NJ_T0095312.1 MGP_C57BL6NJ_G0035831.1 mouse_genomes_project 9 114726165 114757564 - MGP_C57BL6NJ_P0095312 Fbxw25 protein_coding protein_coding MGP_C57BL6NJ_T0092604.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44572034 44590029 + Ift46 protein_coding processed_transcript MGP_C57BL6NJ_T0092605.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578420 44600510 + MGP_C57BL6NJ_P0092605 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092606.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578445 44589933 + MGP_C57BL6NJ_P0092606 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092607.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578536 44594121 + Ift46 protein_coding processed_transcript MGP_C57BL6NJ_T0092608.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578539 44579901 + Ift46 protein_coding processed_transcript MGP_C57BL6NJ_T0092609.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578585 44591845 + MGP_C57BL6NJ_P0092609 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092610.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44578748 44589925 + MGP_C57BL6NJ_P0092610 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092611.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44579185 44589994 + MGP_C57BL6NJ_P0092611 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092612.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44581841 44598691 + MGP_C57BL6NJ_P0092612 Ift46 protein_coding protein_coding MGP_C57BL6NJ_T0092613.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44585737 44590003 + Ift46 protein_coding retained_intron MGP_C57BL6NJ_T0092614.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44592098 44595361 + Ift46 protein_coding processed_transcript MGP_C57BL6NJ_T0092615.1 MGP_C57BL6NJ_G0035211.1 mouse_genomes_project 9 44597239 44598532 + Ift46 protein_coding retained_intron MGP_C57BL6NJ_T0094599.1 MGP_C57BL6NJ_G0035712.1 mouse_genomes_project 9 110719191 110728060 - Col6a4 protein_coding processed_transcript MGP_C57BL6NJ_T0094600.1 MGP_C57BL6NJ_G0035712.1 mouse_genomes_project 9 110720198 110832569 - MGP_C57BL6NJ_P0094600 Col6a4 protein_coding protein_coding MGP_C57BL6NJ_T0094601.1 MGP_C57BL6NJ_G0035712.1 mouse_genomes_project 9 110804000 110805267 - Col6a4 protein_coding processed_transcript MGP_C57BL6NJ_T0098910.1 MGP_C57BL6NJ_G0036974.1 mouse_genomes_project 9 16672977 16673246 - pseudogene pseudogene MGP_C57BL6NJ_T0009425.1 MGP_C57BL6NJ_G0007573.1 mouse_genomes_project 9 43860684 43871382 - Gm10687 lincRNA lincRNA MGP_C57BL6NJ_T0019010.1 MGP_C57BL6NJ_G0016138.1 mouse_genomes_project 9 75171926 75174977 + 2310009A05Rik processed_transcript antisense MGP_C57BL6NJ_T0019011.1 MGP_C57BL6NJ_G0016138.1 mouse_genomes_project 9 75171938 75174577 + 2310009A05Rik processed_transcript retained_intron MGP_C57BL6NJ_T0092493.1 MGP_C57BL6NJ_G0035176.1 mouse_genomes_project 9 42766554 42857507 - MGP_C57BL6NJ_P0092493 Pou2f3 protein_coding protein_coding MGP_C57BL6NJ_T0092494.1 MGP_C57BL6NJ_G0035176.1 mouse_genomes_project 9 42767155 42851324 - MGP_C57BL6NJ_P0092494 Pou2f3 protein_coding protein_coding MGP_C57BL6NJ_T0095294.1 MGP_C57BL6NJ_G0035823.1 mouse_genomes_project 9 114226229 114245824 - MGP_C57BL6NJ_P0095294 Fbxw20 protein_coding protein_coding MGP_C57BL6NJ_T0095295.1 MGP_C57BL6NJ_G0035823.1 mouse_genomes_project 9 114229136 114245803 - Fbxw20 protein_coding retained_intron MGP_C57BL6NJ_T0095296.1 MGP_C57BL6NJ_G0035823.1 mouse_genomes_project 9 114230604 114245794 - MGP_C57BL6NJ_P0095296 Fbxw20 protein_coding protein_coding MGP_C57BL6NJ_T0091775.1 MGP_C57BL6NJ_G0034860.1 mouse_genomes_project 9 12900305 12940022 + MGP_C57BL6NJ_P0091775 Smco4 protein_coding protein_coding MGP_C57BL6NJ_T0091776.1 MGP_C57BL6NJ_G0034860.1 mouse_genomes_project 9 12915624 12940019 + MGP_C57BL6NJ_P0091776 Smco4 protein_coding protein_coding MGP_C57BL6NJ_T0009430.1 MGP_C57BL6NJ_G0007577.1 mouse_genomes_project 9 46868711 46886068 + 2900052N01Rik lincRNA lincRNA MGP_C57BL6NJ_T0009431.1 MGP_C57BL6NJ_G0007577.1 mouse_genomes_project 9 46868821 46886068 + 2900052N01Rik lincRNA lincRNA MGP_C57BL6NJ_T0009432.1 MGP_C57BL6NJ_G0007577.1 mouse_genomes_project 9 46868845 46881269 + 2900052N01Rik lincRNA lincRNA MGP_C57BL6NJ_T0099185.1 MGP_C57BL6NJ_G0037249.1 mouse_genomes_project 9 107023309 107023421 + Gm25669 rRNA rRNA MGP_C57BL6NJ_T0009545.1 MGP_C57BL6NJ_G0007665.1 mouse_genomes_project 9 127179311 127180790 - 1700020M21Rik lincRNA lincRNA MGP_C57BL6NJ_T0100715.1 MGP_C57BL6NJ_G0038761.1 mouse_genomes_project 9 66683174 66683290 - Gm25313 snRNA snRNA MGP_C57BL6NJ_T0102045.1 MGP_C57BL6NJ_G0040091.1 mouse_genomes_project 9 113805275 113805422 - Gm23034 snoRNA snoRNA MGP_C57BL6NJ_T0009429.1 MGP_C57BL6NJ_G0007576.1 mouse_genomes_project 9 46240481 46243503 - 4930448E22Rik lincRNA lincRNA MGP_C57BL6NJ_T0011371.1 MGP_C57BL6NJ_G0009456.1 mouse_genomes_project 9 127232094 127232156 + Mir7090 miRNA miRNA MGP_C57BL6NJ_T0093562.1 MGP_C57BL6NJ_G0035489.1 mouse_genomes_project 9 72003253 72060519 - MGP_C57BL6NJ_P0093562 Fam81a protein_coding protein_coding MGP_C57BL6NJ_T0093563.1 MGP_C57BL6NJ_G0035489.1 mouse_genomes_project 9 72016279 72016806 - Fam81a protein_coding retained_intron MGP_C57BL6NJ_T0093564.1 MGP_C57BL6NJ_G0035489.1 mouse_genomes_project 9 72043897 72060744 - MGP_C57BL6NJ_P0093564 Fam81a protein_coding protein_coding MGP_C57BL6NJ_T0093565.1 MGP_C57BL6NJ_G0035489.1 mouse_genomes_project 9 72043928 72061485 - MGP_C57BL6NJ_P0093565 Fam81a protein_coding protein_coding MGP_C57BL6NJ_T0092542.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44018680 44024107 - Abcg4 protein_coding retained_intron MGP_C57BL6NJ_T0092543.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44018680 44032745 - MGP_C57BL6NJ_P0092543 Abcg4 protein_coding protein_coding MGP_C57BL6NJ_T0092544.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44018682 44033816 - MGP_C57BL6NJ_P0092544 Abcg4 protein_coding protein_coding MGP_C57BL6NJ_T0092545.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44019944 44025331 - Abcg4 protein_coding retained_intron MGP_C57BL6NJ_T0092546.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44020587 44025093 - MGP_C57BL6NJ_P0092546 Abcg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092547.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44022563 44032737 - Abcg4 protein_coding processed_transcript MGP_C57BL6NJ_T0092548.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44022995 44025284 - Abcg4 protein_coding retained_intron MGP_C57BL6NJ_T0092549.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44026140 44027151 - Abcg4 protein_coding retained_intron MGP_C57BL6NJ_T0092550.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44027338 44033558 - MGP_C57BL6NJ_P0092550 Abcg4 protein_coding protein_coding MGP_C57BL6NJ_T0092551.1 MGP_C57BL6NJ_G0035191.1 mouse_genomes_project 9 44027401 44033339 - MGP_C57BL6NJ_P0092551 Abcg4 protein_coding protein_coding MGP_C57BL6NJ_T0002586.1 MGP_C57BL6NJ_G0002473.1 mouse_genomes_project 9 107973431 107975639 + TEC TEC MGP_C57BL6NJ_T0095893.1 MGP_C57BL6NJ_G0035981.1 mouse_genomes_project 9 130236683 130339688 + MGP_C57BL6NJ_P0095893 Ccr9 protein_coding protein_coding MGP_C57BL6NJ_T0095903.1 MGP_C57BL6NJ_G0035981.1 mouse_genomes_project 9 130323172 130339686 + MGP_C57BL6NJ_P0095903 Ccr9 protein_coding protein_coding MGP_C57BL6NJ_T0095904.1 MGP_C57BL6NJ_G0035981.1 mouse_genomes_project 9 130323188 130339249 + MGP_C57BL6NJ_P0095904 Ccr9 protein_coding protein_coding MGP_C57BL6NJ_T0095905.1 MGP_C57BL6NJ_G0035981.1 mouse_genomes_project 9 130323190 130339694 + MGP_C57BL6NJ_P0095905 Ccr9 protein_coding protein_coding MGP_C57BL6NJ_T0095906.1 MGP_C57BL6NJ_G0035981.1 mouse_genomes_project 9 130332180 130341180 + MGP_C57BL6NJ_P0095906 Ccr9 protein_coding protein_coding MGP_C57BL6NJ_T0094747.1 MGP_C57BL6NJ_G0035742.1 mouse_genomes_project 9 112153645 112159607 + MGP_C57BL6NJ_P0094747 Cish protein_coding protein_coding MGP_C57BL6NJ_T0094748.1 MGP_C57BL6NJ_G0035742.1 mouse_genomes_project 9 112154329 112160404 + MGP_C57BL6NJ_P0094748 Cish protein_coding protein_coding MGP_C57BL6NJ_T0094749.1 MGP_C57BL6NJ_G0035742.1 mouse_genomes_project 9 112154526 112159563 + Cish protein_coding processed_transcript MGP_C57BL6NJ_T0094750.1 MGP_C57BL6NJ_G0035742.1 mouse_genomes_project 9 112154531 112158171 + MGP_C57BL6NJ_P0094750 Cish protein_coding protein_coding MGP_C57BL6NJ_T0094751.1 MGP_C57BL6NJ_G0035742.1 mouse_genomes_project 9 112156774 112158078 + Cish protein_coding processed_transcript MGP_C57BL6NJ_T0016558.1 MGP_C57BL6NJ_G0014603.1 mouse_genomes_project 9 86477466 86477872 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005702.1 MGP_C57BL6NJ_G0004806.1 mouse_genomes_project 9 112822900 112824218 - Gm37974 antisense antisense MGP_C57BL6NJ_T0102004.1 MGP_C57BL6NJ_G0040050.1 mouse_genomes_project 9 41926494 41926626 - Gm26272 snoRNA snoRNA MGP_C57BL6NJ_T0093288.1 MGP_C57BL6NJ_G0035421.1 mouse_genomes_project 9 64719982 64724363 - 2300009A05Rik protein_coding processed_transcript MGP_C57BL6NJ_T0093289.1 MGP_C57BL6NJ_G0035421.1 mouse_genomes_project 9 64719982 64724777 - MGP_C57BL6NJ_P0093289 2300009A05Rik protein_coding protein_coding MGP_C57BL6NJ_T0093290.1 MGP_C57BL6NJ_G0035421.1 mouse_genomes_project 9 64719983 64724363 - 2300009A05Rik protein_coding processed_transcript MGP_C57BL6NJ_T0093291.1 MGP_C57BL6NJ_G0035421.1 mouse_genomes_project 9 64723011 64724782 - 2300009A05Rik protein_coding retained_intron MGP_C57BL6NJ_T0095634.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122396946 123144699 - MGP_C57BL6NJ_P0095634 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095635.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122401499 123144715 - MGP_C57BL6NJ_P0095635 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095636.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122401782 122681344 - MGP_C57BL6NJ_P0095636 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095637.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122402225 123144362 - MGP_C57BL6NJ_P0095637 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095638.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122402225 123555112 - MGP_C57BL6NJ_P0095638 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095639.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122402226 123144353 - MGP_C57BL6NJ_P0095639 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095640.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122402740 123144719 - MGP_C57BL6NJ_P0095640 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095641.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122407037 122681357 - MGP_C57BL6NJ_P0095641 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095642.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122515664 123144718 - Rbms3 protein_coding retained_intron MGP_C57BL6NJ_T0095643.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122662537 123144037 - MGP_C57BL6NJ_P0095643 Rbms3 protein_coding protein_coding MGP_C57BL6NJ_T0095644.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122708740 123144715 - Rbms3 protein_coding processed_transcript MGP_C57BL6NJ_T0095645.1 MGP_C57BL6NJ_G0035900.1 mouse_genomes_project 9 122809395 123143833 - Rbms3 protein_coding processed_transcript MGP_C57BL6NJ_T0091904.1 MGP_C57BL6NJ_G0034922.1 mouse_genomes_project 9 18790326 18849957 - MGP_C57BL6NJ_P0091904 Dnmt1 protein_coding protein_coding MGP_C57BL6NJ_T0016508.1 MGP_C57BL6NJ_G0014553.1 mouse_genomes_project 9 45090600 45090836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091830.1 MGP_C57BL6NJ_G0034896.1 mouse_genomes_project 9 17722302 17723337 - MGP_C57BL6NJ_P0091830 Olfr862 protein_coding protein_coding MGP_C57BL6NJ_T0100732.1 MGP_C57BL6NJ_G0038778.1 mouse_genomes_project 9 85382706 85382803 - Gm24393 snRNA snRNA MGP_C57BL6NJ_T0016564.1 MGP_C57BL6NJ_G0014609.1 mouse_genomes_project 9 90361020 90361729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0019045.1 MGP_C57BL6NJ_G0016150.1 mouse_genomes_project 9 106216518 106307106 - Gm29521 processed_transcript lincRNA MGP_C57BL6NJ_T0019046.1 MGP_C57BL6NJ_G0016150.1 mouse_genomes_project 9 106303936 106307148 - Gm29521 processed_transcript retained_intron MGP_C57BL6NJ_T0094293.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102733143 102736739 + Copb2 protein_coding retained_intron MGP_C57BL6NJ_T0094294.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102733153 102757270 + MGP_C57BL6NJ_P0094294 Copb2 protein_coding protein_coding MGP_C57BL6NJ_T0094295.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102748838 102750110 + Copb2 protein_coding retained_intron MGP_C57BL6NJ_T0094296.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102755732 102756717 + Copb2 protein_coding retained_intron MGP_C57BL6NJ_T0094297.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102756233 102756919 + Copb2 protein_coding retained_intron MGP_C57BL6NJ_T0094298.1 MGP_C57BL6NJ_G0035650.1 mouse_genomes_project 9 102756434 102757149 + Copb2 protein_coding retained_intron MGP_C57BL6NJ_T0091800.1 MGP_C57BL6NJ_G0034869.1 mouse_genomes_project 9 16055143 16058000 + MGP_C57BL6NJ_P0091800 Mbd3l2 protein_coding protein_coding MGP_C57BL6NJ_T0093787.1 MGP_C57BL6NJ_G0035539.1 mouse_genomes_project 9 78619297 78732968 - MGP_C57BL6NJ_P0093787 Hcrtr2 protein_coding protein_coding MGP_C57BL6NJ_T0093788.1 MGP_C57BL6NJ_G0035539.1 mouse_genomes_project 9 78623371 78733213 - MGP_C57BL6NJ_P0093788 Hcrtr2 protein_coding protein_coding MGP_C57BL6NJ_T0093789.1 MGP_C57BL6NJ_G0035539.1 mouse_genomes_project 9 78731032 78732679 - Hcrtr2 protein_coding retained_intron MGP_C57BL6NJ_T0095474.1 MGP_C57BL6NJ_G0035856.1 mouse_genomes_project 9 116105438 116110588 + MGP_C57BL6NJ_P0095474 Prss43 protein_coding protein_coding MGP_C57BL6NJ_T0009406.1 MGP_C57BL6NJ_G0007557.1 mouse_genomes_project 9 25575166 25579282 - lincRNA lincRNA MGP_C57BL6NJ_T0102008.1 MGP_C57BL6NJ_G0040054.1 mouse_genomes_project 9 52688967 52689100 + Gm25562 snoRNA snoRNA MGP_C57BL6NJ_T0011354.1 MGP_C57BL6NJ_G0009439.1 mouse_genomes_project 9 112083053 112083141 - Gm22238 miRNA miRNA MGP_C57BL6NJ_T0094192.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783512 99794212 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094193.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783512 99892938 + MGP_C57BL6NJ_P0094193 Atr protein_coding protein_coding MGP_C57BL6NJ_T0094194.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783554 99834634 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094195.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783565 99789454 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094196.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783570 99787671 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094197.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783584 99795804 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094198.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99783640 99892918 + MGP_C57BL6NJ_P0094198 Atr protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094199.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99817406 99819805 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094200.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99835116 99837502 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094201.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99848433 99852591 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094202.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99871645 99873420 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0094203.1 MGP_C57BL6NJ_G0035633.1 mouse_genomes_project 9 99877572 99882484 + Atr protein_coding retained_intron MGP_C57BL6NJ_T0091670.1 MGP_C57BL6NJ_G0034826.1 mouse_genomes_project 9 5093035 5114141 - MGP_C57BL6NJ_P0091670 9230110C19Rik protein_coding protein_coding MGP_C57BL6NJ_T0009441.1 MGP_C57BL6NJ_G0007586.1 mouse_genomes_project 9 59360519 59374840 + 4930461G14Rik lincRNA lincRNA MGP_C57BL6NJ_T0002591.1 MGP_C57BL6NJ_G0002478.1 mouse_genomes_project 9 108844337 108845850 + TEC TEC MGP_C57BL6NJ_T0092389.1 MGP_C57BL6NJ_G0035129.1 mouse_genomes_project 9 38895640 38896582 - MGP_C57BL6NJ_P0092389 Olfr958 protein_coding protein_coding MGP_C57BL6NJ_T0093508.1 MGP_C57BL6NJ_G0035478.1 mouse_genomes_project 9 68945337 69136417 - MGP_C57BL6NJ_P0093508 Tln2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093509.1 MGP_C57BL6NJ_G0035478.1 mouse_genomes_project 9 68945345 69308700 - MGP_C57BL6NJ_P0093509 Tln2 protein_coding protein_coding MGP_C57BL6NJ_T0093510.1 MGP_C57BL6NJ_G0035478.1 mouse_genomes_project 9 68949396 69289559 - MGP_C57BL6NJ_P0093510 Tln2 protein_coding protein_coding MGP_C57BL6NJ_T0016522.1 MGP_C57BL6NJ_G0014567.1 mouse_genomes_project 9 73864731 73864993 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099565.1 MGP_C57BL6NJ_G0037611.1 mouse_genomes_project 9 130328146 130350255 - Gm17021 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0002585.1 MGP_C57BL6NJ_G0002472.1 mouse_genomes_project 9 107636920 107639394 + TEC TEC MGP_C57BL6NJ_T0016641.1 MGP_C57BL6NJ_G0014686.1 mouse_genomes_project 9 130318464 130318738 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092554.1 MGP_C57BL6NJ_G0035194.1 mouse_genomes_project 9 44078175 44090306 + MGP_C57BL6NJ_P0092554 Dpagt1 protein_coding protein_coding MGP_C57BL6NJ_T0002554.1 MGP_C57BL6NJ_G0002441.1 mouse_genomes_project 9 94915218 94917042 - TEC TEC MGP_C57BL6NJ_T0092772.1 MGP_C57BL6NJ_G0035265.1 mouse_genomes_project 9 49609725 49623713 - MGP_C57BL6NJ_P0092772 Ankk1 protein_coding protein_coding MGP_C57BL6NJ_T0016483.1 MGP_C57BL6NJ_G0014528.1 mouse_genomes_project 9 4755048 4757735 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095297.1 MGP_C57BL6NJ_G0035824.1 mouse_genomes_project 9 114362436 114368640 - MGP_C57BL6NJ_P0095297 protein_coding protein_coding MGP_C57BL6NJ_T0095298.1 MGP_C57BL6NJ_G0035824.1 mouse_genomes_project 9 114362482 114484408 - MGP_C57BL6NJ_P0095298 protein_coding protein_coding MGP_C57BL6NJ_T0095299.1 MGP_C57BL6NJ_G0035824.1 mouse_genomes_project 9 114362772 114484403 - MGP_C57BL6NJ_P0095299 protein_coding protein_coding MGP_C57BL6NJ_T0095300.1 MGP_C57BL6NJ_G0035824.1 mouse_genomes_project 9 114377047 114483729 - MGP_C57BL6NJ_P0095300 protein_coding protein_coding MGP_C57BL6NJ_T0092338.1 MGP_C57BL6NJ_G0035084.1 mouse_genomes_project 9 37483272 37484223 + MGP_C57BL6NJ_P0092338 Olfr895 protein_coding protein_coding MGP_C57BL6NJ_T0002564.1 MGP_C57BL6NJ_G0002451.1 mouse_genomes_project 9 102645892 102647049 + TEC TEC MGP_C57BL6NJ_T0002551.1 MGP_C57BL6NJ_G0002438.1 mouse_genomes_project 9 94692356 94695862 - TEC TEC MGP_C57BL6NJ_T0092918.1 MGP_C57BL6NJ_G0035311.1 mouse_genomes_project 9 54455152 54520551 - MGP_C57BL6NJ_P0092918 Elmod1 protein_coding protein_coding MGP_C57BL6NJ_T0092919.1 MGP_C57BL6NJ_G0035311.1 mouse_genomes_project 9 54455152 54483381 - MGP_C57BL6NJ_P0092919 Elmod1 protein_coding protein_coding MGP_C57BL6NJ_T0095614.1 MGP_C57BL6NJ_G0035890.1 mouse_genomes_project 9 120234105 120290575 - MGP_C57BL6NJ_P0095614 Cnot10 protein_coding protein_coding MGP_C57BL6NJ_T0092640.1 MGP_C57BL6NJ_G0035221.1 mouse_genomes_project 9 44875399 44897642 + MGP_C57BL6NJ_P0092640 Mpzl3 protein_coding protein_coding MGP_C57BL6NJ_T0092641.1 MGP_C57BL6NJ_G0035221.1 mouse_genomes_project 9 44875401 44885383 + Mpzl3 protein_coding retained_intron MGP_C57BL6NJ_T0092642.1 MGP_C57BL6NJ_G0035221.1 mouse_genomes_project 9 44875422 44886670 + MGP_C57BL6NJ_P0092642 Mpzl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092643.1 MGP_C57BL6NJ_G0035221.1 mouse_genomes_project 9 44879462 44885867 + Mpzl3 protein_coding retained_intron MGP_C57BL6NJ_T0092644.1 MGP_C57BL6NJ_G0035221.1 mouse_genomes_project 9 44890810 44895366 + Mpzl3 protein_coding retained_intron MGP_C57BL6NJ_T0095753.1 MGP_C57BL6NJ_G0035937.1 mouse_genomes_project 9 126795552 126798689 + MGP_C57BL6NJ_P0095753 Rpl14 protein_coding protein_coding MGP_C57BL6NJ_T0094365.1 MGP_C57BL6NJ_G0035671.1 mouse_genomes_project 9 104850079 104906274 - MGP_C57BL6NJ_P0094365 Nck1 protein_coding protein_coding MGP_C57BL6NJ_T0094366.1 MGP_C57BL6NJ_G0035671.1 mouse_genomes_project 9 104852789 104864633 - MGP_C57BL6NJ_P0094366 Nck1 protein_coding protein_coding MGP_C57BL6NJ_T0094367.1 MGP_C57BL6NJ_G0035671.1 mouse_genomes_project 9 104855363 104906262 - MGP_C57BL6NJ_P0094367 Nck1 protein_coding protein_coding MGP_C57BL6NJ_T0094368.1 MGP_C57BL6NJ_G0035671.1 mouse_genomes_project 9 104855586 104905871 - MGP_C57BL6NJ_P0094368 Nck1 protein_coding protein_coding MGP_C57BL6NJ_T0093857.1 MGP_C57BL6NJ_G0035556.1 mouse_genomes_project 9 80987493 80989792 - MGP_C57BL6NJ_P0093857 Dppa5a protein_coding protein_coding MGP_C57BL6NJ_T0095414.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115628945 115685599 - MGP_C57BL6NJ_P0095414 Klhl18 protein_coding protein_coding MGP_C57BL6NJ_T0095415.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115628953 115685595 - MGP_C57BL6NJ_P0095415 Klhl18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095416.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115628953 115685694 - MGP_C57BL6NJ_P0095416 Klhl18 protein_coding protein_coding MGP_C57BL6NJ_T0095417.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115633735 115635598 - Klhl18 protein_coding retained_intron MGP_C57BL6NJ_T0095418.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115639201 115658773 - MGP_C57BL6NJ_P0095418 Klhl18 protein_coding protein_coding MGP_C57BL6NJ_T0095419.1 MGP_C57BL6NJ_G0035846.1 mouse_genomes_project 9 115640420 115650662 - Klhl18 protein_coding retained_intron MGP_C57BL6NJ_T0092318.1 MGP_C57BL6NJ_G0035065.1 mouse_genomes_project 9 36859577 36873492 - MGP_C57BL6NJ_P0092318 Olfr160 protein_coding protein_coding MGP_C57BL6NJ_T0011365.1 MGP_C57BL6NJ_G0009450.1 mouse_genomes_project 9 116221081 116221158 + Gm24269 miRNA miRNA MGP_C57BL6NJ_T0009532.1 MGP_C57BL6NJ_G0007655.1 mouse_genomes_project 9 115885651 115886428 + Gm42470 lincRNA lincRNA MGP_C57BL6NJ_T0092934.1 MGP_C57BL6NJ_G0035317.1 mouse_genomes_project 9 55090236 55110648 - MGP_C57BL6NJ_P0092934 Cib2 protein_coding protein_coding MGP_C57BL6NJ_T0099538.1 MGP_C57BL6NJ_G0037589.1 mouse_genomes_project 9 113566770 113567284 - Gm38163 sense_intronic sense_intronic MGP_C57BL6NJ_T0018965.1 MGP_C57BL6NJ_G0016125.1 mouse_genomes_project 9 19160238 19161262 + Gm16754 processed_transcript retained_intron MGP_C57BL6NJ_T0018966.1 MGP_C57BL6NJ_G0016125.1 mouse_genomes_project 9 19160238 19167436 + Gm16754 processed_transcript antisense MGP_C57BL6NJ_T0018967.1 MGP_C57BL6NJ_G0016125.1 mouse_genomes_project 9 19160270 19167843 + Gm16754 processed_transcript antisense MGP_C57BL6NJ_T0095755.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127206183 127227644 + MGP_C57BL6NJ_P0095755 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095756.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210381 127237516 + MGP_C57BL6NJ_P0095756 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095757.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210456 127237515 + MGP_C57BL6NJ_P0095757 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095758.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210467 127233456 + Ctnnb1 protein_coding retained_intron MGP_C57BL6NJ_T0095759.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210559 127237515 + MGP_C57BL6NJ_P0095759 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095760.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210604 127228719 + MGP_C57BL6NJ_P0095760 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095761.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127210799 127228302 + MGP_C57BL6NJ_P0095761 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095762.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127227229 127236526 + MGP_C57BL6NJ_P0095762 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095763.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127228097 127232408 + MGP_C57BL6NJ_P0095763 Ctnnb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095764.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127232133 127232850 + Ctnnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0095765.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127232305 127234648 + Ctnnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0095766.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127232465 127234543 + MGP_C57BL6NJ_P0095766 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095767.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127232922 127236034 + MGP_C57BL6NJ_P0095767 Ctnnb1 protein_coding protein_coding MGP_C57BL6NJ_T0095768.1 MGP_C57BL6NJ_G0035939.1 mouse_genomes_project 9 127233875 127234833 + Ctnnb1 protein_coding retained_intron MGP_C57BL6NJ_T0091905.1 MGP_C57BL6NJ_G0034923.1 mouse_genomes_project 9 18862928 18873678 - MGP_C57BL6NJ_P0091905 S1pr2 protein_coding protein_coding MGP_C57BL6NJ_T0092726.1 MGP_C57BL6NJ_G0035246.1 mouse_genomes_project 9 46194813 46207006 + Bud13 protein_coding retained_intron MGP_C57BL6NJ_T0092727.1 MGP_C57BL6NJ_G0035246.1 mouse_genomes_project 9 46194813 46211690 + MGP_C57BL6NJ_P0092727 Bud13 protein_coding protein_coding MGP_C57BL6NJ_T0092728.1 MGP_C57BL6NJ_G0035246.1 mouse_genomes_project 9 46199685 46211690 + MGP_C57BL6NJ_P0092728 Bud13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092729.1 MGP_C57BL6NJ_G0035246.1 mouse_genomes_project 9 46199707 46203483 + Bud13 protein_coding retained_intron MGP_C57BL6NJ_T0091923.1 MGP_C57BL6NJ_G0034934.1 mouse_genomes_project 9 19164526 19174129 - MGP_C57BL6NJ_P0091923 Keap1 protein_coding protein_coding MGP_C57BL6NJ_T0091924.1 MGP_C57BL6NJ_G0034934.1 mouse_genomes_project 9 19164527 19173868 - MGP_C57BL6NJ_P0091924 Keap1 protein_coding protein_coding MGP_C57BL6NJ_T0091925.1 MGP_C57BL6NJ_G0034934.1 mouse_genomes_project 9 19164863 19173610 - MGP_C57BL6NJ_P0091925 Keap1 protein_coding protein_coding MGP_C57BL6NJ_T0091926.1 MGP_C57BL6NJ_G0034934.1 mouse_genomes_project 9 19165429 19173876 - MGP_C57BL6NJ_P0091926 Keap1 protein_coding protein_coding MGP_C57BL6NJ_T0091927.1 MGP_C57BL6NJ_G0034934.1 mouse_genomes_project 9 19170919 19171990 - Keap1 protein_coding processed_transcript MGP_C57BL6NJ_T0101997.1 MGP_C57BL6NJ_G0040043.1 mouse_genomes_project 9 34060870 34061014 + Gm24262 snoRNA snoRNA MGP_C57BL6NJ_T0099178.1 MGP_C57BL6NJ_G0037242.1 mouse_genomes_project 9 65403867 65403962 + Gm25606 rRNA rRNA MGP_C57BL6NJ_T0016621.1 MGP_C57BL6NJ_G0014666.1 mouse_genomes_project 9 108930960 108931675 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009433.1 MGP_C57BL6NJ_G0007578.1 mouse_genomes_project 9 49222647 49226778 - 1700042D02Rik lincRNA lincRNA MGP_C57BL6NJ_T0009481.1 MGP_C57BL6NJ_G0007618.1 mouse_genomes_project 9 93257817 93261003 + 1700017I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0094371.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 104957883 105111471 + MGP_C57BL6NJ_P0094371 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094372.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105012953 105352716 + MGP_C57BL6NJ_P0094372 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094373.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105012953 105181530 + MGP_C57BL6NJ_P0094373 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094374.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013105 105113072 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0094375.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013118 105085985 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0094376.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013118 105086004 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0094377.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013118 105352715 + MGP_C57BL6NJ_P0094377 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094378.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013121 105250781 + MGP_C57BL6NJ_P0094378 Stag1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094379.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013141 105351570 + MGP_C57BL6NJ_P0094379 Stag1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094380.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013273 105351577 + MGP_C57BL6NJ_P0094380 Stag1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094381.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105013275 105160139 + MGP_C57BL6NJ_P0094381 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094382.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105181442 105351587 + Stag1 protein_coding processed_transcript MGP_C57BL6NJ_T0094383.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105219165 105232832 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0094384.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105228703 105351005 + MGP_C57BL6NJ_P0094384 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094385.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105231809 105239463 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0094386.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105280281 105345851 + MGP_C57BL6NJ_P0094386 Stag1 protein_coding protein_coding MGP_C57BL6NJ_T0094387.1 MGP_C57BL6NJ_G0035673.1 mouse_genomes_project 9 105349939 105353546 + Stag1 protein_coding retained_intron MGP_C57BL6NJ_T0095684.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125162776 125186586 + Dlec1 protein_coding retained_intron MGP_C57BL6NJ_T0095685.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125162776 125209612 + MGP_C57BL6NJ_P0095685 Dlec1 protein_coding protein_coding MGP_C57BL6NJ_T0095686.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125162776 125209030 + MGP_C57BL6NJ_P0095686 Dlec1 protein_coding protein_coding MGP_C57BL6NJ_T0095687.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125162807 125195980 + MGP_C57BL6NJ_P0095687 Dlec1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095688.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125179952 125205568 + Dlec1 protein_coding retained_intron MGP_C57BL6NJ_T0095689.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125188302 125189521 + Dlec1 protein_coding retained_intron MGP_C57BL6NJ_T0095690.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125189657 125195978 + Dlec1 protein_coding retained_intron MGP_C57BL6NJ_T0095691.1 MGP_C57BL6NJ_G0035910.1 mouse_genomes_project 9 125189808 125191528 + Dlec1 protein_coding retained_intron MGP_C57BL6NJ_T0093277.1 MGP_C57BL6NJ_G0035416.1 mouse_genomes_project 9 64126938 64141374 + MGP_C57BL6NJ_P0093277 Cln6 protein_coding protein_coding MGP_C57BL6NJ_T0093278.1 MGP_C57BL6NJ_G0035416.1 mouse_genomes_project 9 64126945 64135386 + MGP_C57BL6NJ_P0093278 Cln6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093279.1 MGP_C57BL6NJ_G0035416.1 mouse_genomes_project 9 64135382 64140079 + MGP_C57BL6NJ_P0093279 Cln6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093280.1 MGP_C57BL6NJ_G0035416.1 mouse_genomes_project 9 64136400 64140530 + MGP_C57BL6NJ_P0093280 Cln6 protein_coding protein_coding MGP_C57BL6NJ_T0094235.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100545489 100650930 - MGP_C57BL6NJ_P0094235 Rasa2 protein_coding protein_coding MGP_C57BL6NJ_T0094236.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100548494 100551369 - Rasa2 protein_coding retained_intron MGP_C57BL6NJ_T0094237.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100552471 100650849 - MGP_C57BL6NJ_P0094237 Rasa2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094238.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100562774 100578036 - Rasa2 protein_coding retained_intron MGP_C57BL6NJ_T0094239.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100563480 100570059 - Rasa2 protein_coding retained_intron MGP_C57BL6NJ_T0094240.1 MGP_C57BL6NJ_G0035639.1 mouse_genomes_project 9 100577880 100586599 - Rasa2 protein_coding retained_intron MGP_C57BL6NJ_T0092616.1 MGP_C57BL6NJ_G0035212.1 mouse_genomes_project 9 44601571 44607038 - Tmem25 protein_coding processed_transcript MGP_C57BL6NJ_T0092617.1 MGP_C57BL6NJ_G0035212.1 mouse_genomes_project 9 44601571 44607038 - MGP_C57BL6NJ_P0092617 Tmem25 protein_coding protein_coding MGP_C57BL6NJ_T0092618.1 MGP_C57BL6NJ_G0035212.1 mouse_genomes_project 9 44601571 44607103 - MGP_C57BL6NJ_P0092618 Tmem25 protein_coding protein_coding MGP_C57BL6NJ_T0094777.1 MGP_C57BL6NJ_G0035748.1 mouse_genomes_project 9 112409222 112412703 + MGP_C57BL6NJ_P0094777 Nprl2 protein_coding protein_coding MGP_C57BL6NJ_T0094778.1 MGP_C57BL6NJ_G0035748.1 mouse_genomes_project 9 112409237 112411631 + MGP_C57BL6NJ_P0094778 Nprl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094779.1 MGP_C57BL6NJ_G0035748.1 mouse_genomes_project 9 112409241 112412692 + Nprl2 protein_coding retained_intron MGP_C57BL6NJ_T0094780.1 MGP_C57BL6NJ_G0035748.1 mouse_genomes_project 9 112409257 112410686 + Nprl2 protein_coding retained_intron MGP_C57BL6NJ_T0094781.1 MGP_C57BL6NJ_G0035748.1 mouse_genomes_project 9 112410974 112411457 + Nprl2 protein_coding retained_intron MGP_C57BL6NJ_T0099278.1 MGP_C57BL6NJ_G0037342.1 mouse_genomes_project 9 65703973 65704108 + Gm24289 scaRNA scaRNA MGP_C57BL6NJ_T0009434.1 MGP_C57BL6NJ_G0007579.1 mouse_genomes_project 9 53745127 53768802 + 4930510E17Rik lincRNA lincRNA MGP_C57BL6NJ_T0099172.1 MGP_C57BL6NJ_G0037236.1 mouse_genomes_project 9 10082595 10082716 + Gm25365 rRNA rRNA MGP_C57BL6NJ_T0009443.1 MGP_C57BL6NJ_G0007588.1 mouse_genomes_project 9 61812347 61844421 + 1700036A12Rik lincRNA lincRNA MGP_C57BL6NJ_T0009444.1 MGP_C57BL6NJ_G0007588.1 mouse_genomes_project 9 61843746 61844100 + 1700036A12Rik lincRNA lincRNA MGP_C57BL6NJ_T0002496.1 MGP_C57BL6NJ_G0002384.1 mouse_genomes_project 9 33322981 33344576 - TEC TEC MGP_C57BL6NJ_T0016499.1 MGP_C57BL6NJ_G0014544.1 mouse_genomes_project 9 34503562 34503851 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093292.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64746387 64933163 - MGP_C57BL6NJ_P0093292 Iqch protein_coding protein_coding MGP_C57BL6NJ_T0093293.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64746552 64933118 - MGP_C57BL6NJ_P0093293 Iqch protein_coding protein_coding MGP_C57BL6NJ_T0093294.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64746552 64933118 - MGP_C57BL6NJ_P0093294 Iqch protein_coding protein_coding MGP_C57BL6NJ_T0093295.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64746594 64933153 - MGP_C57BL6NJ_P0093295 Iqch protein_coding protein_coding MGP_C57BL6NJ_T0093296.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64746767 64933087 - MGP_C57BL6NJ_P0093296 Iqch protein_coding protein_coding MGP_C57BL6NJ_T0093297.1 MGP_C57BL6NJ_G0035422.1 mouse_genomes_project 9 64913353 64933155 - Iqch protein_coding retained_intron MGP_C57BL6NJ_T0092810.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50946383 50981471 - MGP_C57BL6NJ_P0092810 Dixdc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092811.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50946386 51010873 - MGP_C57BL6NJ_P0092811 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092812.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50946390 50982253 - Dixdc1 protein_coding retained_intron MGP_C57BL6NJ_T0092813.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50946390 51010965 - MGP_C57BL6NJ_P0092813 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092814.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50949829 50979649 - Dixdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0092815.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50949829 51022409 - MGP_C57BL6NJ_P0092815 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092816.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50949893 50967339 - Dixdc1 protein_coding retained_intron MGP_C57BL6NJ_T0092817.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50959671 50976690 - MGP_C57BL6NJ_P0092817 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092818.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50972864 50982328 - Dixdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0092819.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50976358 50981526 - Dixdc1 protein_coding retained_intron MGP_C57BL6NJ_T0092820.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50976536 50980662 - Dixdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0092821.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50992537 51022339 - MGP_C57BL6NJ_P0092821 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092822.1 MGP_C57BL6NJ_G0035279.1 mouse_genomes_project 9 50993040 51010836 - MGP_C57BL6NJ_P0092822 Dixdc1 protein_coding protein_coding MGP_C57BL6NJ_T0092962.1 MGP_C57BL6NJ_G0035327.1 mouse_genomes_project 9 55560614 55587674 + MGP_C57BL6NJ_P0092962 Chrna5 protein_coding protein_coding MGP_C57BL6NJ_T0016636.1 MGP_C57BL6NJ_G0014681.1 mouse_genomes_project 9 123308365 123310836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0091595.1 MGP_C57BL6NJ_G0034800.1 mouse_genomes_project 9 332077 721539 + MGP_C57BL6NJ_P0091595 Gucy1a2 protein_coding protein_coding MGP_C57BL6NJ_T0102026.1 MGP_C57BL6NJ_G0040072.1 mouse_genomes_project 9 85149813 85149944 + Gm23748 snoRNA snoRNA MGP_C57BL6NJ_T0091691.1 MGP_C57BL6NJ_G0034837.1 mouse_genomes_project 9 10881831 10973718 + MGP_C57BL6NJ_P0091691 protein_coding protein_coding MGP_C57BL6NJ_T0091692.1 MGP_C57BL6NJ_G0034837.1 mouse_genomes_project 9 10883487 10971673 + MGP_C57BL6NJ_P0091692 protein_coding protein_coding MGP_C57BL6NJ_T0091693.1 MGP_C57BL6NJ_G0034837.1 mouse_genomes_project 9 10924258 10971675 + protein_coding processed_transcript MGP_C57BL6NJ_T0091694.1 MGP_C57BL6NJ_G0034837.1 mouse_genomes_project 9 10924258 10973863 + MGP_C57BL6NJ_P0091694 protein_coding protein_coding MGP_C57BL6NJ_T0093366.1 MGP_C57BL6NJ_G0035441.1 mouse_genomes_project 9 66581450 66620168 + MGP_C57BL6NJ_P0093366 Igdcc4 protein_coding protein_coding MGP_C57BL6NJ_T0093367.1 MGP_C57BL6NJ_G0035441.1 mouse_genomes_project 9 66581499 66617808 + MGP_C57BL6NJ_P0093367 Igdcc4 protein_coding protein_coding MGP_C57BL6NJ_T0016609.1 MGP_C57BL6NJ_G0014654.1 mouse_genomes_project 9 104751200 104751465 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092233.1 MGP_C57BL6NJ_G0035041.1 mouse_genomes_project 9 35495745 35497320 + MGP_C57BL6NJ_P0092233 Gm9513 protein_coding protein_coding MGP_C57BL6NJ_T0016498.1 MGP_C57BL6NJ_G0014543.1 mouse_genomes_project 9 34196387 34196705 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095657.1 MGP_C57BL6NJ_G0035903.1 mouse_genomes_project 9 124040433 124114271 - MGP_C57BL6NJ_P0095657 Cmc1 protein_coding protein_coding MGP_C57BL6NJ_T0091988.1 MGP_C57BL6NJ_G0034955.1 mouse_genomes_project 9 19927017 19937719 - MGP_C57BL6NJ_P0091988 Rab3d protein_coding protein_coding MGP_C57BL6NJ_T0091989.1 MGP_C57BL6NJ_G0034955.1 mouse_genomes_project 9 19927036 19937666 - MGP_C57BL6NJ_P0091989 Rab3d protein_coding protein_coding MGP_C57BL6NJ_T0091990.1 MGP_C57BL6NJ_G0034955.1 mouse_genomes_project 9 19928168 19937644 - MGP_C57BL6NJ_P0091990 Rab3d protein_coding protein_coding MGP_C57BL6NJ_T0091991.1 MGP_C57BL6NJ_G0034955.1 mouse_genomes_project 9 19934418 19937616 - MGP_C57BL6NJ_P0091991 Rab3d protein_coding protein_coding MGP_C57BL6NJ_T0091992.1 MGP_C57BL6NJ_G0034955.1 mouse_genomes_project 9 19935141 19937648 - Rab3d protein_coding retained_intron MGP_C57BL6NJ_T0094807.1 MGP_C57BL6NJ_G0035753.1 mouse_genomes_project 9 112443916 112448682 + MGP_C57BL6NJ_P0094807 Hyal1 protein_coding protein_coding MGP_C57BL6NJ_T0094808.1 MGP_C57BL6NJ_G0035753.1 mouse_genomes_project 9 112443927 112446534 + MGP_C57BL6NJ_P0094808 Hyal1 protein_coding protein_coding MGP_C57BL6NJ_T0094809.1 MGP_C57BL6NJ_G0035753.1 mouse_genomes_project 9 112443947 112447950 + MGP_C57BL6NJ_P0094809 Hyal1 protein_coding protein_coding MGP_C57BL6NJ_T0094810.1 MGP_C57BL6NJ_G0035753.1 mouse_genomes_project 9 112443979 112446390 + MGP_C57BL6NJ_P0094810 Hyal1 protein_coding protein_coding MGP_C57BL6NJ_T0094817.1 MGP_C57BL6NJ_G0035753.1 mouse_genomes_project 9 112446568 112448646 + Hyal1 protein_coding retained_intron MGP_C57BL6NJ_T0095854.1 MGP_C57BL6NJ_G0035967.1 mouse_genomes_project 9 129440931 129446842 - MGP_C57BL6NJ_P0095854 1110059G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0095855.1 MGP_C57BL6NJ_G0035967.1 mouse_genomes_project 9 129443377 129446795 - MGP_C57BL6NJ_P0095855 1110059G10Rik protein_coding protein_coding MGP_C57BL6NJ_T0019017.1 MGP_C57BL6NJ_G0016140.1 mouse_genomes_project 9 80062561 80064070 + Gm19569 processed_transcript lincRNA MGP_C57BL6NJ_T0019018.1 MGP_C57BL6NJ_G0016140.1 mouse_genomes_project 9 80062804 80064070 + Gm19569 processed_transcript retained_intron MGP_C57BL6NJ_T0094772.1 MGP_C57BL6NJ_G0035747.1 mouse_genomes_project 9 112406003 112408862 - MGP_C57BL6NJ_P0094772 Cyb561d2 protein_coding protein_coding MGP_C57BL6NJ_T0094773.1 MGP_C57BL6NJ_G0035747.1 mouse_genomes_project 9 112406571 112409190 - MGP_C57BL6NJ_P0094773 Cyb561d2 protein_coding protein_coding MGP_C57BL6NJ_T0094774.1 MGP_C57BL6NJ_G0035747.1 mouse_genomes_project 9 112406577 112408522 - MGP_C57BL6NJ_P0094774 Cyb561d2 protein_coding protein_coding MGP_C57BL6NJ_T0094775.1 MGP_C57BL6NJ_G0035747.1 mouse_genomes_project 9 112406873 112409121 - Cyb561d2 protein_coding processed_transcript MGP_C57BL6NJ_T0094776.1 MGP_C57BL6NJ_G0035747.1 mouse_genomes_project 9 112407038 112409124 - MGP_C57BL6NJ_P0094776 Cyb561d2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011321.1 MGP_C57BL6NJ_G0009406.1 mouse_genomes_project 9 44159865 44159931 + Mir7085 miRNA miRNA MGP_C57BL6NJ_T0002589.1 MGP_C57BL6NJ_G0002476.1 mouse_genomes_project 9 108154070 108155659 - TEC TEC MGP_C57BL6NJ_T0102023.1 MGP_C57BL6NJ_G0040069.1 mouse_genomes_project 9 77041067 77041210 + Gm22315 snoRNA snoRNA MGP_C57BL6NJ_T0005723.1 MGP_C57BL6NJ_G0004823.1 mouse_genomes_project 9 128197984 128208889 + Gm17163 antisense antisense MGP_C57BL6NJ_T0091810.1 MGP_C57BL6NJ_G0034876.1 mouse_genomes_project 9 16560051 16560999 + MGP_C57BL6NJ_P0091810 Olfr830 protein_coding protein_coding MGP_C57BL6NJ_T0093785.1 MGP_C57BL6NJ_G0035538.1 mouse_genomes_project 9 78554849 78604922 - MGP_C57BL6NJ_P0093785 Gfral protein_coding protein_coding MGP_C57BL6NJ_T0093786.1 MGP_C57BL6NJ_G0035538.1 mouse_genomes_project 9 78554849 78604922 - MGP_C57BL6NJ_P0093786 Gfral protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094189.1 MGP_C57BL6NJ_G0035632.1 mouse_genomes_project 9 99669903 99771202 - MGP_C57BL6NJ_P0094189 Pls1 protein_coding protein_coding MGP_C57BL6NJ_T0094190.1 MGP_C57BL6NJ_G0035632.1 mouse_genomes_project 9 99701154 99740868 - MGP_C57BL6NJ_P0094190 Pls1 protein_coding protein_coding MGP_C57BL6NJ_T0094191.1 MGP_C57BL6NJ_G0035632.1 mouse_genomes_project 9 99702527 99771227 - Pls1 protein_coding processed_transcript MGP_C57BL6NJ_T0002518.1 MGP_C57BL6NJ_G0002406.1 mouse_genomes_project 9 74770492 74771981 + TEC TEC MGP_C57BL6NJ_T0092921.1 MGP_C57BL6NJ_G0035313.1 mouse_genomes_project 9 54703567 54730472 - MGP_C57BL6NJ_P0092921 Cyp19a1 protein_coding protein_coding MGP_C57BL6NJ_T0095611.1 MGP_C57BL6NJ_G0035887.1 mouse_genomes_project 9 120120145 120127277 - MGP_C57BL6NJ_P0095611 Ccr4 protein_coding protein_coding MGP_C57BL6NJ_T0002559.1 MGP_C57BL6NJ_G0002446.1 mouse_genomes_project 9 99277646 99278740 + TEC TEC MGP_C57BL6NJ_T0091859.1 MGP_C57BL6NJ_G0034910.1 mouse_genomes_project 9 18353576 18381256 - MGP_C57BL6NJ_P0091859 Zfp266 protein_coding protein_coding MGP_C57BL6NJ_T0091860.1 MGP_C57BL6NJ_G0034910.1 mouse_genomes_project 9 18357634 18381247 - MGP_C57BL6NJ_P0091860 Zfp266 protein_coding protein_coding MGP_C57BL6NJ_T0005625.1 MGP_C57BL6NJ_G0004753.1 mouse_genomes_project 9 68232650 68244683 + Gm15563 antisense antisense MGP_C57BL6NJ_T0094407.1 MGP_C57BL6NJ_G0035679.1 mouse_genomes_project 9 106980329 107021783 + MGP_C57BL6NJ_P0094407 Ky protein_coding protein_coding MGP_C57BL6NJ_T0094408.1 MGP_C57BL6NJ_G0035679.1 mouse_genomes_project 9 106996881 107003605 + Ky protein_coding retained_intron MGP_C57BL6NJ_T0002601.1 MGP_C57BL6NJ_G0002488.1 mouse_genomes_project 9 113107134 113107952 - TEC TEC MGP_C57BL6NJ_T0092620.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44611149 44689518 - MGP_C57BL6NJ_P0092620 Kmt2a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0092621.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44611150 44689540 - MGP_C57BL6NJ_P0092621 Kmt2a protein_coding protein_coding MGP_C57BL6NJ_T0092622.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44611150 44689518 - MGP_C57BL6NJ_P0092622 Kmt2a protein_coding protein_coding MGP_C57BL6NJ_T0092623.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44622475 44627911 - MGP_C57BL6NJ_P0092623 Kmt2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092624.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44630530 44656651 - MGP_C57BL6NJ_P0092624 Kmt2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092625.1 MGP_C57BL6NJ_G0035214.1 mouse_genomes_project 9 44650029 44689540 - MGP_C57BL6NJ_P0092625 Kmt2a protein_coding protein_coding MGP_C57BL6NJ_T0093063.1 MGP_C57BL6NJ_G0035357.1 mouse_genomes_project 9 58235397 58262121 - MGP_C57BL6NJ_P0093063 Scamp5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0093960.1 MGP_C57BL6NJ_G0035580.1 mouse_genomes_project 9 86784252 86813713 - MGP_C57BL6NJ_P0093960 Elovl4 protein_coding protein_coding MGP_C57BL6NJ_T0093961.1 MGP_C57BL6NJ_G0035580.1 mouse_genomes_project 9 86786223 86813738 - MGP_C57BL6NJ_P0093961 Elovl4 protein_coding protein_coding MGP_C57BL6NJ_T0095821.1 MGP_C57BL6NJ_G0035954.1 mouse_genomes_project 9 128302630 128304580 - MGP_C57BL6NJ_P0095821 Cyp8b1 protein_coding protein_coding MGP_C57BL6NJ_T0016634.1 MGP_C57BL6NJ_G0014679.1 mouse_genomes_project 9 122936745 122937296 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092941.1 MGP_C57BL6NJ_G0035320.1 mouse_genomes_project 9 55259867 55275754 + MGP_C57BL6NJ_P0092941 Dnaja4 protein_coding protein_coding MGP_C57BL6NJ_T0092942.1 MGP_C57BL6NJ_G0035320.1 mouse_genomes_project 9 55260508 55270331 + MGP_C57BL6NJ_P0092942 Dnaja4 protein_coding protein_coding MGP_C57BL6NJ_T0092943.1 MGP_C57BL6NJ_G0035320.1 mouse_genomes_project 9 55260553 55277308 + MGP_C57BL6NJ_P0092943 Dnaja4 protein_coding protein_coding MGP_C57BL6NJ_T0016573.1 MGP_C57BL6NJ_G0014618.1 mouse_genomes_project 9 91906741 91907032 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0016516.1 MGP_C57BL6NJ_G0014561.1 mouse_genomes_project 9 60769983 60770470 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102006.1 MGP_C57BL6NJ_G0040052.1 mouse_genomes_project 9 44539075 44539210 - Gm24166 snoRNA snoRNA MGP_C57BL6NJ_T0011348.1 MGP_C57BL6NJ_G0009433.1 mouse_genomes_project 9 98610902 98610964 + Mir7656 miRNA miRNA MGP_C57BL6NJ_T0094299.1 MGP_C57BL6NJ_G0035651.1 mouse_genomes_project 9 102757617 102773042 - MGP_C57BL6NJ_P0094299 Mrps22 protein_coding protein_coding MGP_C57BL6NJ_T0094300.1 MGP_C57BL6NJ_G0035651.1 mouse_genomes_project 9 102766567 102773027 - Mrps22 protein_coding retained_intron MGP_C57BL6NJ_T0018979.1 MGP_C57BL6NJ_G0016129.1 mouse_genomes_project 9 40249147 40252582 - Gm16096 processed_transcript processed_transcript MGP_C57BL6NJ_T0018980.1 MGP_C57BL6NJ_G0016129.1 mouse_genomes_project 9 40249153 40251867 - Gm16096 processed_transcript processed_transcript MGP_C57BL6NJ_T0094451.1 MGP_C57BL6NJ_G0035688.1 mouse_genomes_project 9 107708879 107753308 - MGP_C57BL6NJ_P0094451 Gm20425 protein_coding protein_coding MGP_C57BL6NJ_T0095730.1 MGP_C57BL6NJ_G0035928.1 mouse_genomes_project 9 126197339 126207183 - MGP_C57BL6NJ_P0095730 Xirp1 protein_coding protein_coding MGP_C57BL6NJ_T0093351.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66158909 66180148 - MGP_C57BL6NJ_P0093351 Rab11a protein_coding protein_coding MGP_C57BL6NJ_T0093352.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159011 66168125 - Rab11a protein_coding retained_intron MGP_C57BL6NJ_T0093353.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159112 66169115 - MGP_C57BL6NJ_P0093353 Rab11a protein_coding protein_coding MGP_C57BL6NJ_T0093354.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159176 66168858 - Rab11a protein_coding processed_transcript MGP_C57BL6NJ_T0093355.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159255 66180029 - MGP_C57BL6NJ_P0093355 Rab11a protein_coding protein_coding MGP_C57BL6NJ_T0093356.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159349 66180029 - MGP_C57BL6NJ_P0093356 Rab11a protein_coding protein_coding MGP_C57BL6NJ_T0093357.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66159359 66180158 - MGP_C57BL6NJ_P0093357 Rab11a protein_coding protein_coding MGP_C57BL6NJ_T0093358.1 MGP_C57BL6NJ_G0035435.1 mouse_genomes_project 9 66169095 66178917 - Rab11a protein_coding processed_transcript MGP_C57BL6NJ_T0092659.1 MGP_C57BL6NJ_G0035228.1 mouse_genomes_project 9 45083482 45101240 - MGP_C57BL6NJ_P0092659 Il10ra protein_coding protein_coding MGP_C57BL6NJ_T0092660.1 MGP_C57BL6NJ_G0035228.1 mouse_genomes_project 9 45083485 45101240 - MGP_C57BL6NJ_P0092660 Il10ra protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092661.1 MGP_C57BL6NJ_G0035228.1 mouse_genomes_project 9 45084172 45101237 - MGP_C57BL6NJ_P0092661 Il10ra protein_coding protein_coding MGP_C57BL6NJ_T0092044.1 MGP_C57BL6NJ_G0034980.1 mouse_genomes_project 9 21409457 21679304 + MGP_C57BL6NJ_P0092044 Bmper protein_coding protein_coding MGP_C57BL6NJ_T0002512.1 MGP_C57BL6NJ_G0002400.1 mouse_genomes_project 9 74368262 74370268 + TEC TEC MGP_C57BL6NJ_T0092955.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523242 55530483 + MGP_C57BL6NJ_P0092955 Psma4 protein_coding protein_coding MGP_C57BL6NJ_T0092956.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523250 55528839 + Psma4 protein_coding retained_intron MGP_C57BL6NJ_T0092957.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523257 55527485 + Psma4 protein_coding retained_intron MGP_C57BL6NJ_T0092958.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523267 55525259 + Psma4 protein_coding processed_transcript MGP_C57BL6NJ_T0092959.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523267 55529386 + MGP_C57BL6NJ_P0092959 Psma4 protein_coding protein_coding MGP_C57BL6NJ_T0092960.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523342 55525879 + Psma4 protein_coding retained_intron MGP_C57BL6NJ_T0092961.1 MGP_C57BL6NJ_G0035326.1 mouse_genomes_project 9 55523556 55528752 + MGP_C57BL6NJ_P0092961 Psma4 protein_coding protein_coding MGP_C57BL6NJ_T0095857.1 MGP_C57BL6NJ_G0035969.1 mouse_genomes_project 9 129527331 129531301 + MGP_C57BL6NJ_P0095857 Tmem42 protein_coding protein_coding MGP_C57BL6NJ_T0102001.1 MGP_C57BL6NJ_G0040047.1 mouse_genomes_project 9 40283019 40283105 + Snord14c snoRNA snoRNA MGP_C57BL6NJ_T0092790.1 MGP_C57BL6NJ_G0035275.1 mouse_genomes_project 9 50879852 50881272 + MGP_C57BL6NJ_P0092790 Timm8b protein_coding protein_coding MGP_C57BL6NJ_T0012016.1 MGP_C57BL6NJ_G0010101.1 mouse_genomes_project 9 127044855 127045176 - Gm23624 misc_RNA misc_RNA MGP_C57BL6NJ_T0095732.1 MGP_C57BL6NJ_G0035930.1 mouse_genomes_project 9 126273576 126276350 + MGP_C57BL6NJ_P0095732 Ccr8 protein_coding protein_coding MGP_C57BL6NJ_T0101978.1 MGP_C57BL6NJ_G0040024.1 mouse_genomes_project 9 2002752 2002887 + Gm24896 snoRNA snoRNA MGP_C57BL6NJ_T0093974.1 MGP_C57BL6NJ_G0035583.1 mouse_genomes_project 9 88401677 88401765 + MGP_C57BL6NJ_P0093974 Gm11114 protein_coding protein_coding MGP_C57BL6NJ_T0095155.1 MGP_C57BL6NJ_G0035800.1 mouse_genomes_project 9 113554359 113560788 - MGP_C57BL6NJ_P0095155 Wdr6 protein_coding protein_coding MGP_C57BL6NJ_T0016610.1 MGP_C57BL6NJ_G0014655.1 mouse_genomes_project 9 104989581 104990573 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002516.1 MGP_C57BL6NJ_G0002404.1 mouse_genomes_project 9 74503395 74506634 + TEC TEC MGP_C57BL6NJ_T0095619.1 MGP_C57BL6NJ_G0035894.1 mouse_genomes_project 9 120468980 120525498 - MGP_C57BL6NJ_P0095619 Cmtm8 protein_coding protein_coding MGP_C57BL6NJ_T0100753.1 MGP_C57BL6NJ_G0038799.1 mouse_genomes_project 9 120253081 120253186 - Gm23232 snRNA snRNA MGP_C57BL6NJ_T0093762.1 MGP_C57BL6NJ_G0035528.1 mouse_genomes_project 9 77628121 77663086 + MGP_C57BL6NJ_P0093762 Gnb5 protein_coding protein_coding MGP_C57BL6NJ_T0091929.1 MGP_C57BL6NJ_G0034936.1 mouse_genomes_project 9 19206574 19217727 + MGP_C57BL6NJ_P0091929 Atg4d protein_coding protein_coding MGP_C57BL6NJ_T0092705.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 45910944 46135059 + MGP_C57BL6NJ_P0092705 Sik3 protein_coding protein_coding MGP_C57BL6NJ_T0092706.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 45910988 46133140 + MGP_C57BL6NJ_P0092706 Sik3 protein_coding protein_coding MGP_C57BL6NJ_T0092707.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 45911072 46132099 + MGP_C57BL6NJ_P0092707 Sik3 protein_coding protein_coding MGP_C57BL6NJ_T0092708.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 45911104 46113788 + MGP_C57BL6NJ_P0092708 Sik3 protein_coding protein_coding MGP_C57BL6NJ_T0092709.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 46063559 46135053 + Sik3 protein_coding processed_transcript MGP_C57BL6NJ_T0092710.1 MGP_C57BL6NJ_G0035240.1 mouse_genomes_project 9 46130435 46132099 + MGP_C57BL6NJ_P0092710 Sik3 protein_coding protein_coding MGP_C57BL6NJ_T0095022.1 MGP_C57BL6NJ_G0035780.1 mouse_genomes_project 9 113005026 113106988 - MGP_C57BL6NJ_P0095022 Bsn protein_coding protein_coding MGP_C57BL6NJ_T0095023.1 MGP_C57BL6NJ_G0035780.1 mouse_genomes_project 9 113005027 113019418 - MGP_C57BL6NJ_P0095023 Bsn protein_coding protein_coding MGP_C57BL6NJ_T0092028.1 MGP_C57BL6NJ_G0034975.1 mouse_genomes_project 9 20415181 20491275 - MGP_C57BL6NJ_P0092028 Anln protein_coding protein_coding MGP_C57BL6NJ_T0093825.1 MGP_C57BL6NJ_G0035547.1 mouse_genomes_project 9 80626957 80642502 + MGP_C57BL6NJ_P0093825 Gcm1 protein_coding protein_coding MGP_C57BL6NJ_T0016562.1 MGP_C57BL6NJ_G0014607.1 mouse_genomes_project 9 89480301 89480845 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0095907.1 MGP_C57BL6NJ_G0035983.1 mouse_genomes_project 9 130348825 130413202 - MGP_C57BL6NJ_P0095907 Fyco1 protein_coding protein_coding MGP_C57BL6NJ_T0095908.1 MGP_C57BL6NJ_G0035983.1 mouse_genomes_project 9 130349201 130412869 - MGP_C57BL6NJ_P0095908 Fyco1 protein_coding protein_coding MGP_C57BL6NJ_T0095910.1 MGP_C57BL6NJ_G0035983.1 mouse_genomes_project 9 130389793 130413184 - MGP_C57BL6NJ_P0095910 Fyco1 protein_coding protein_coding MGP_C57BL6NJ_T0095911.1 MGP_C57BL6NJ_G0035983.1 mouse_genomes_project 9 130399484 130413189 - Fyco1 protein_coding retained_intron MGP_C57BL6NJ_T0093594.1 MGP_C57BL6NJ_G0035501.1 mouse_genomes_project 9 73491318 73619628 - MGP_C57BL6NJ_P0093594 Gcom1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093595.1 MGP_C57BL6NJ_G0035501.1 mouse_genomes_project 9 73491318 73619628 - MGP_C57BL6NJ_P0093595 Gcom1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0093596.1 MGP_C57BL6NJ_G0035501.1 mouse_genomes_project 9 73491318 73619628 - MGP_C57BL6NJ_P0093596 Gcom1 protein_coding protein_coding MGP_C57BL6NJ_T0093597.1 MGP_C57BL6NJ_G0035501.1 mouse_genomes_project 9 73491318 73619628 - MGP_C57BL6NJ_P0093597 Gcom1 protein_coding protein_coding MGP_C57BL6NJ_T0002576.1 MGP_C57BL6NJ_G0002463.1 mouse_genomes_project 9 105566353 105568237 + TEC TEC MGP_C57BL6NJ_T0091642.1 MGP_C57BL6NJ_G0034820.1 mouse_genomes_project 9 4654644 4708841 + MGP_C57BL6NJ_P0091642 Mmp20 protein_coding protein_coding MGP_C57BL6NJ_T0016495.1 MGP_C57BL6NJ_G0014540.1 mouse_genomes_project 9 31424222 31424640 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0005645.1 MGP_C57BL6NJ_G0004769.1 mouse_genomes_project 9 84484676 84501885 + D430036J16Rik antisense antisense MGP_C57BL6NJ_T0005646.1 MGP_C57BL6NJ_G0004769.1 mouse_genomes_project 9 84485055 84502412 + D430036J16Rik antisense antisense MGP_C57BL6NJ_T0005647.1 MGP_C57BL6NJ_G0004769.1 mouse_genomes_project 9 84485158 84501451 + D430036J16Rik antisense antisense MGP_C57BL6NJ_T0005648.1 MGP_C57BL6NJ_G0004769.1 mouse_genomes_project 9 84485483 84502341 + D430036J16Rik antisense antisense MGP_C57BL6NJ_T0005649.1 MGP_C57BL6NJ_G0004769.1 mouse_genomes_project 9 84485543 84501608 + D430036J16Rik antisense antisense MGP_C57BL6NJ_T0092704.1 MGP_C57BL6NJ_G0035239.1 mouse_genomes_project 9 45847953 45878456 - MGP_C57BL6NJ_P0092704 Pafah1b2 protein_coding protein_coding MGP_C57BL6NJ_T0100704.1 MGP_C57BL6NJ_G0038750.1 mouse_genomes_project 9 45489729 45489836 - Gm22069 snRNA snRNA MGP_C57BL6NJ_T0095700.1 MGP_C57BL6NJ_G0035915.1 mouse_genomes_project 9 125329805 125421809 - MGP_C57BL6NJ_P0095700 Oxsr1 protein_coding protein_coding MGP_C57BL6NJ_T0095701.1 MGP_C57BL6NJ_G0035915.1 mouse_genomes_project 9 125332043 125421704 - MGP_C57BL6NJ_P0095701 Oxsr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095702.1 MGP_C57BL6NJ_G0035915.1 mouse_genomes_project 9 125332518 125334736 - Oxsr1 protein_coding retained_intron MGP_C57BL6NJ_T0095703.1 MGP_C57BL6NJ_G0035915.1 mouse_genomes_project 9 125334141 125356146 - MGP_C57BL6NJ_P0095703 Oxsr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002594.1 MGP_C57BL6NJ_G0002481.1 mouse_genomes_project 9 109832675 109834084 + TEC TEC MGP_C57BL6NJ_T0093920.1 MGP_C57BL6NJ_G0035574.1 mouse_genomes_project 9 84741298 85104067 + MGP_C57BL6NJ_P0093920 Mei4 protein_coding protein_coding MGP_C57BL6NJ_T0093921.1 MGP_C57BL6NJ_G0035574.1 mouse_genomes_project 9 84741478 84908222 + MGP_C57BL6NJ_P0093921 Mei4 protein_coding protein_coding MGP_C57BL6NJ_T0009413.1 MGP_C57BL6NJ_G0007564.1 mouse_genomes_project 9 33492998 33493777 - Gm26662 lincRNA lincRNA MGP_C57BL6NJ_T0091754.1 MGP_C57BL6NJ_G0034854.1 mouse_genomes_project 9 12412380 12474569 - MGP_C57BL6NJ_P0091754 Hephl1 protein_coding protein_coding MGP_C57BL6NJ_T0095492.1 MGP_C57BL6NJ_G0035862.1 mouse_genomes_project 9 116208491 116212544 - MGP_C57BL6NJ_P0095492 Gm590 protein_coding protein_coding MGP_C57BL6NJ_T0092875.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52134856 52160583 + Arhgap20 protein_coding retained_intron MGP_C57BL6NJ_T0092876.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52134864 52198876 + Arhgap20 protein_coding retained_intron MGP_C57BL6NJ_T0092877.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52134871 52227040 + MGP_C57BL6NJ_P0092877 Arhgap20 protein_coding protein_coding MGP_C57BL6NJ_T0092878.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52135095 52227049 + MGP_C57BL6NJ_P0092878 Arhgap20 protein_coding protein_coding MGP_C57BL6NJ_T0092879.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52188895 52202588 + Arhgap20 protein_coding processed_transcript MGP_C57BL6NJ_T0092880.1 MGP_C57BL6NJ_G0035294.1 mouse_genomes_project 9 52204962 52221833 + Arhgap20 protein_coding processed_transcript MGP_C57BL6NJ_T0002578.1 MGP_C57BL6NJ_G0002465.1 mouse_genomes_project 9 105600134 105602819 - TEC TEC MGP_C57BL6NJ_T0016629.1 MGP_C57BL6NJ_G0014674.1 mouse_genomes_project 9 114597607 114598820 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0092341.1 MGP_C57BL6NJ_G0035087.1 mouse_genomes_project 9 37584633 37590309 + MGP_C57BL6NJ_P0092341 Olfr251 protein_coding protein_coding MGP_C57BL6NJ_T0009478.1 MGP_C57BL6NJ_G0007615.1 mouse_genomes_project 9 86688249 86689998 + Gm2109 lincRNA lincRNA MGP_C57BL6NJ_T0005715.1 MGP_C57BL6NJ_G0004819.1 mouse_genomes_project 9 121776672 121787887 - Gm16142 antisense antisense MGP_C57BL6NJ_T0091930.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19216815 19232322 - MGP_C57BL6NJ_P0091930 Kri1 protein_coding protein_coding MGP_C57BL6NJ_T0091931.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19216994 19232306 - MGP_C57BL6NJ_P0091931 Kri1 protein_coding protein_coding MGP_C57BL6NJ_T0091932.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19217226 19218752 - Kri1 protein_coding retained_intron MGP_C57BL6NJ_T0091933.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19223749 19232322 - Kri1 protein_coding retained_intron MGP_C57BL6NJ_T0091934.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19225831 19232309 - Kri1 protein_coding retained_intron MGP_C57BL6NJ_T0091935.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19226791 19232322 - Kri1 protein_coding retained_intron MGP_C57BL6NJ_T0091936.1 MGP_C57BL6NJ_G0034937.1 mouse_genomes_project 9 19231877 19232309 - Kri1 protein_coding retained_intron MGP_C57BL6NJ_T0092352.1 MGP_C57BL6NJ_G0035098.1 mouse_genomes_project 9 37855776 37858159 + MGP_C57BL6NJ_P0092352 Olfr913 protein_coding protein_coding MGP_C57BL6NJ_T0095856.1 MGP_C57BL6NJ_G0035968.1 mouse_genomes_project 9 129446922 129524815 + MGP_C57BL6NJ_P0095856 Kif15 protein_coding protein_coding MGP_C57BL6NJ_T0093144.1 MGP_C57BL6NJ_G0035383.1 mouse_genomes_project 9 59395323 59406466 + MGP_C57BL6NJ_P0093144 6030419C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0011323.1 MGP_C57BL6NJ_G0009408.1 mouse_genomes_project 9 45822270 45822340 - Mir7087 miRNA miRNA MGP_C57BL6NJ_T0091647.1 MGP_C57BL6NJ_G0034823.1 mouse_genomes_project 9 4849136 4869038 - MGP_C57BL6NJ_P0091647 Birc2 protein_coding protein_coding MGP_C57BL6NJ_T0091648.1 MGP_C57BL6NJ_G0034823.1 mouse_genomes_project 9 4849145 4865965 - MGP_C57BL6NJ_P0091648 Birc2 protein_coding protein_coding MGP_C57BL6NJ_T0091649.1 MGP_C57BL6NJ_G0034823.1 mouse_genomes_project 9 4865493 4868786 - Birc2 protein_coding processed_transcript MGP_C57BL6NJ_T0091650.1 MGP_C57BL6NJ_G0034823.1 mouse_genomes_project 9 4866457 4869044 - Birc2 protein_coding retained_intron MGP_C57BL6NJ_T0091651.1 MGP_C57BL6NJ_G0034823.1 mouse_genomes_project 9 4868667 4869045 - MGP_C57BL6NJ_P0091651 Birc2 protein_coding protein_coding MGP_C57BL6NJ_T0002561.1 MGP_C57BL6NJ_G0002448.1 mouse_genomes_project 9 100187978 100191407 + TEC TEC MGP_C57BL6NJ_T0092999.1 MGP_C57BL6NJ_G0035337.1 mouse_genomes_project 9 56624776 56643102 - MGP_C57BL6NJ_P0092999 4930563M21Rik protein_coding protein_coding MGP_C57BL6NJ_T0092575.1 MGP_C57BL6NJ_G0035206.1 mouse_genomes_project 9 44279300 44293848 - MGP_C57BL6NJ_P0092575 Cxcr5 protein_coding protein_coding MGP_C57BL6NJ_T0092576.1 MGP_C57BL6NJ_G0035206.1 mouse_genomes_project 9 44279300 44326121 - MGP_C57BL6NJ_P0092576 Cxcr5 protein_coding protein_coding MGP_C57BL6NJ_T0091945.1 MGP_C57BL6NJ_G0034942.1 mouse_genomes_project 9 19379770 19387707 + MGP_C57BL6NJ_P0091945 Qtrt1 protein_coding protein_coding MGP_C57BL6NJ_T0091626.1 MGP_C57BL6NJ_G0034811.1 mouse_genomes_project 9 4194163 4219830 + MGP_C57BL6NJ_P0091626 protein_coding protein_coding MGP_C57BL6NJ_T0005596.1 MGP_C57BL6NJ_G0004736.1 mouse_genomes_project 9 44995742 44997907 + Gm17099 antisense antisense MGP_C57BL6NJ_T0005617.1 MGP_C57BL6NJ_G0004748.1 mouse_genomes_project 9 58604700 58664269 + antisense antisense MGP_C57BL6NJ_T0005618.1 MGP_C57BL6NJ_G0004748.1 mouse_genomes_project 9 58656252 58664603 + antisense antisense MGP_C57BL6NJ_T0005619.1 MGP_C57BL6NJ_G0004748.1 mouse_genomes_project 9 58657654 58664508 + antisense antisense MGP_C57BL6NJ_T0095195.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113820627 113831091 + MGP_C57BL6NJ_P0095195 Nckipsd protein_coding protein_coding MGP_C57BL6NJ_T0095196.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113820632 113823409 + MGP_C57BL6NJ_P0095196 Nckipsd protein_coding protein_coding MGP_C57BL6NJ_T0095197.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113820680 113823865 + MGP_C57BL6NJ_P0095197 Nckipsd protein_coding protein_coding MGP_C57BL6NJ_T0095198.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113824184 113826341 + MGP_C57BL6NJ_P0095198 Nckipsd protein_coding protein_coding MGP_C57BL6NJ_T0095199.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113825687 113826586 + Nckipsd protein_coding retained_intron MGP_C57BL6NJ_T0095200.1 MGP_C57BL6NJ_G0035806.1 mouse_genomes_project 9 113827095 113828371 + Nckipsd protein_coding retained_intron MGP_C57BL6NJ_T0092492.1 MGP_C57BL6NJ_G0035175.1 mouse_genomes_project 9 42750585 42758322 - MGP_C57BL6NJ_P0092492 Tmem136 protein_coding protein_coding MGP_C57BL6NJ_T0002597.1 MGP_C57BL6NJ_G0002484.1 mouse_genomes_project 9 112500516 112502280 - TEC TEC MGP_C57BL6NJ_T0095308.1 MGP_C57BL6NJ_G0035829.1 mouse_genomes_project 9 114610338 114626559 - MGP_C57BL6NJ_P0095308 Fbxw15 protein_coding protein_coding MGP_C57BL6NJ_T0095309.1 MGP_C57BL6NJ_G0035829.1 mouse_genomes_project 9 114610345 114626547 - MGP_C57BL6NJ_P0095309 Fbxw15 protein_coding protein_coding MGP_C57BL6NJ_T0095310.1 MGP_C57BL6NJ_G0035829.1 mouse_genomes_project 9 114614895 114626545 - MGP_C57BL6NJ_P0095310 Fbxw15 protein_coding protein_coding MGP_C57BL6NJ_T0094546.1 MGP_C57BL6NJ_G0035706.1 mouse_genomes_project 9 109831706 110087998 - MGP_C57BL6NJ_P0094546 Nek11 protein_coding protein_coding MGP_C57BL6NJ_T0094547.1 MGP_C57BL6NJ_G0035706.1 mouse_genomes_project 9 109832524 110085495 - MGP_C57BL6NJ_P0094547 Nek11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094548.1 MGP_C57BL6NJ_G0035706.1 mouse_genomes_project 9 109928148 110087761 - MGP_C57BL6NJ_P0094548 Nek11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094549.1 MGP_C57BL6NJ_G0035706.1 mouse_genomes_project 9 109980779 110087732 - MGP_C57BL6NJ_P0094549 Nek11 protein_coding protein_coding MGP_C57BL6NJ_T0012014.1 MGP_C57BL6NJ_G0010099.1 mouse_genomes_project 9 118889482 118889779 + Gm22492 misc_RNA misc_RNA MGP_C57BL6NJ_T0009503.1 MGP_C57BL6NJ_G0007633.1 mouse_genomes_project 9 102313121 102313748 - 2610303G11Rik lincRNA lincRNA MGP_C57BL6NJ_T0092148.1 MGP_C57BL6NJ_G0035014.1 mouse_genomes_project 9 31143131 31170931 + MGP_C57BL6NJ_P0092148 Kcnj1 protein_coding protein_coding MGP_C57BL6NJ_T0092149.1 MGP_C57BL6NJ_G0035014.1 mouse_genomes_project 9 31165725 31170931 + MGP_C57BL6NJ_P0092149 Kcnj1 protein_coding protein_coding MGP_C57BL6NJ_T0093983.1 MGP_C57BL6NJ_G0035586.1 mouse_genomes_project 9 88989021 88993672 + MGP_C57BL6NJ_P0093983 Tpbg protein_coding protein_coding MGP_C57BL6NJ_T0093984.1 MGP_C57BL6NJ_G0035586.1 mouse_genomes_project 9 88989506 88993672 + MGP_C57BL6NJ_P0093984 Tpbg protein_coding protein_coding MGP_C57BL6NJ_T0093985.1 MGP_C57BL6NJ_G0035586.1 mouse_genomes_project 9 88990001 88990566 + Tpbg protein_coding processed_transcript MGP_C57BL6NJ_T0095724.1 MGP_C57BL6NJ_G0035925.1 mouse_genomes_project 9 126098592 126110482 - MGP_C57BL6NJ_P0095724 Gorasp1 protein_coding protein_coding MGP_C57BL6NJ_T0095248.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114019740 114041135 + MGP_C57BL6NJ_P0095248 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095249.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114019760 114041082 + MGP_C57BL6NJ_P0095249 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095250.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114019777 114041082 + Shisa5 protein_coding retained_intron MGP_C57BL6NJ_T0095251.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114021591 114040101 + MGP_C57BL6NJ_P0095251 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095252.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114024230 114034759 + MGP_C57BL6NJ_P0095252 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095253.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034464 114040313 + MGP_C57BL6NJ_P0095253 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095254.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034523 114039736 + MGP_C57BL6NJ_P0095254 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095255.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034527 114040382 + MGP_C57BL6NJ_P0095255 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095256.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034548 114039710 + MGP_C57BL6NJ_P0095256 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095257.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034566 114040371 + MGP_C57BL6NJ_P0095257 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095258.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034568 114039769 + MGP_C57BL6NJ_P0095258 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095259.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034570 114040089 + MGP_C57BL6NJ_P0095259 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095260.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034579 114039732 + MGP_C57BL6NJ_P0095260 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095261.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114034803 114040216 + MGP_C57BL6NJ_P0095261 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095262.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114036222 114040060 + Shisa5 protein_coding processed_transcript MGP_C57BL6NJ_T0095263.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114038229 114040565 + MGP_C57BL6NJ_P0095263 Shisa5 protein_coding protein_coding MGP_C57BL6NJ_T0095264.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114038314 114039909 + Shisa5 protein_coding processed_transcript MGP_C57BL6NJ_T0095265.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114038378 114039849 + Shisa5 protein_coding processed_transcript MGP_C57BL6NJ_T0095266.1 MGP_C57BL6NJ_G0035814.1 mouse_genomes_project 9 114039297 114039833 + Shisa5 protein_coding retained_intron MGP_C57BL6NJ_T0016500.1 MGP_C57BL6NJ_G0014545.1 mouse_genomes_project 9 34518486 34518756 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0094605.1 MGP_C57BL6NJ_G0035714.1 mouse_genomes_project 9 110914774 110934944 + MGP_C57BL6NJ_P0094605 Wdr82 protein_coding protein_coding MGP_C57BL6NJ_T0094606.1 MGP_C57BL6NJ_G0035714.1 mouse_genomes_project 9 110914775 110917820 + Wdr82 protein_coding retained_intron MGP_C57BL6NJ_T0094607.1 MGP_C57BL6NJ_G0035714.1 mouse_genomes_project 9 110920523 110930307 + MGP_C57BL6NJ_P0094607 Wdr82 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094204.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897535 100000492 + MGP_C57BL6NJ_P0094204 Xrn1 protein_coding protein_coding MGP_C57BL6NJ_T0094205.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897542 100005938 + MGP_C57BL6NJ_P0094205 Xrn1 protein_coding protein_coding MGP_C57BL6NJ_T0094206.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897568 99910546 + MGP_C57BL6NJ_P0094206 Xrn1 protein_coding protein_coding MGP_C57BL6NJ_T0094207.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897607 99943183 + Xrn1 protein_coding retained_intron MGP_C57BL6NJ_T0094208.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897634 100000492 + Xrn1 protein_coding retained_intron MGP_C57BL6NJ_T0094209.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99897637 99955608 + MGP_C57BL6NJ_P0094209 Xrn1 protein_coding protein_coding MGP_C57BL6NJ_T0094210.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99914536 99918151 + Xrn1 protein_coding retained_intron MGP_C57BL6NJ_T0094211.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99916308 99921125 + Xrn1 protein_coding retained_intron MGP_C57BL6NJ_T0094212.1 MGP_C57BL6NJ_G0035634.1 mouse_genomes_project 9 99962690 99965736 + Xrn1 protein_coding retained_intron MGP_C57BL6NJ_T0095852.1 MGP_C57BL6NJ_G0035966.1 mouse_genomes_project 9 129417057 129425010 + MGP_C57BL6NJ_P0095852 Zfp105 protein_coding protein_coding MGP_C57BL6NJ_T0095853.1 MGP_C57BL6NJ_G0035966.1 mouse_genomes_project 9 129417084 129423660 + MGP_C57BL6NJ_P0095853 Zfp105 protein_coding protein_coding MGP_C57BL6NJ_T0005597.1 MGP_C57BL6NJ_G0004737.1 mouse_genomes_project 9 45159989 45163783 - 1700003G13Rik antisense antisense MGP_C57BL6NJ_T0005598.1 MGP_C57BL6NJ_G0004737.1 mouse_genomes_project 9 45159990 45163804 - 1700003G13Rik antisense antisense MGP_C57BL6NJ_T0092349.1 MGP_C57BL6NJ_G0035095.1 mouse_genomes_project 9 37772447 37773387 + MGP_C57BL6NJ_P0092349 Olfr911-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0092834.1 MGP_C57BL6NJ_G0035284.1 mouse_genomes_project 9 51054296 51058728 + Fdxacb1 protein_coding retained_intron MGP_C57BL6NJ_T0092835.1 MGP_C57BL6NJ_G0035284.1 mouse_genomes_project 9 51054309 51057650 + MGP_C57BL6NJ_P0092835 Fdxacb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0092836.1 MGP_C57BL6NJ_G0035284.1 mouse_genomes_project 9 51054315 51058666 + MGP_C57BL6NJ_P0092836 Fdxacb1 protein_coding protein_coding MGP_C57BL6NJ_T0092838.1 MGP_C57BL6NJ_G0035284.1 mouse_genomes_project 9 51056120 51057596 + MGP_C57BL6NJ_P0092838 Fdxacb1 protein_coding protein_coding MGP_C57BL6NJ_T0019019.1 MGP_C57BL6NJ_G0016141.1 mouse_genomes_project 9 82521508 82531103 + 4930429F24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002557.1 MGP_C57BL6NJ_G0002444.1 mouse_genomes_project 9 95365322 95366147 - TEC TEC MGP_C57BL6NJ_T0002573.1 MGP_C57BL6NJ_G0002460.1 mouse_genomes_project 9 105501644 105503246 + TEC TEC MGP_C57BL6NJ_T0092227.1 MGP_C57BL6NJ_G0035036.1 mouse_genomes_project 9 34726925 34728988 - MGP_C57BL6NJ_P0092227 D730048I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0102582.1 MGP_C57BL6NJ_G0035901.1 mouse_genomes_project 9 123835477 123984021 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102583.1 MGP_C57BL6NJ_G0035901.1 mouse_genomes_project 9 123879161 123984183 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102584.1 MGP_C57BL6NJ_G0035901.1 mouse_genomes_project 9 123927829 123984183 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102585.1 MGP_C57BL6NJ_G0035901.1 mouse_genomes_project 9 123982843 124012943 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0093021.1 MGP_C57BL6NJ_G0035345.1 mouse_genomes_project 9 57596069 57630831 + MGP_C57BL6NJ_P0093021 Cspg4 protein_coding protein_coding MGP_C57BL6NJ_T0101989.1 MGP_C57BL6NJ_G0040035.1 mouse_genomes_project 9 17154010 17154139 + Gm23048 snoRNA snoRNA MGP_C57BL6NJ_T0095517.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116457559 116542200 + MGP_C57BL6NJ_P0095517 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095518.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116458078 116567883 + MGP_C57BL6NJ_P0095518 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095519.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116458080 116566437 + MGP_C57BL6NJ_P0095519 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095520.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116458102 116567883 + MGP_C57BL6NJ_P0095520 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095521.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116458164 116567885 + MGP_C57BL6NJ_P0095521 Lrrfip2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0095522.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116458412 116566437 + MGP_C57BL6NJ_P0095522 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095523.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116459642 116566437 + MGP_C57BL6NJ_P0095523 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095525.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116527617 116556414 + MGP_C57BL6NJ_P0095525 Lrrfip2 protein_coding protein_coding MGP_C57BL6NJ_T0095526.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116535466 116567883 + Lrrfip2 protein_coding processed_transcript MGP_C57BL6NJ_T0095527.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116541879 116548273 + Lrrfip2 protein_coding retained_intron MGP_C57BL6NJ_T0095528.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116556407 116558724 + Lrrfip2 protein_coding retained_intron MGP_C57BL6NJ_T0095529.1 MGP_C57BL6NJ_G0035868.1 mouse_genomes_project 9 116561384 116566168 + Lrrfip2 protein_coding retained_intron MGP_C57BL6NJ_T0009512.1 MGP_C57BL6NJ_G0007642.1 mouse_genomes_project 9 107178615 107179565 + 4930533D04Rik lincRNA lincRNA MGP_C57BL6NJ_T0091799.1 MGP_C57BL6NJ_G0034868.1 mouse_genomes_project 9 16037714 16039169 + MGP_C57BL6NJ_P0091799 Gm5612 protein_coding protein_coding MGP_C57BL6NJ_T0093790.1 MGP_C57BL6NJ_G0035540.1 mouse_genomes_project 9 78917112 79004002 - MGP_C57BL6NJ_P0093790 Fam83b protein_coding protein_coding MGP_C57BL6NJ_T0093791.1 MGP_C57BL6NJ_G0035540.1 mouse_genomes_project 9 78917763 78980982 - MGP_C57BL6NJ_P0093791 Fam83b protein_coding protein_coding MGP_C57BL6NJ_T0005708.1 MGP_C57BL6NJ_G0004812.1 mouse_genomes_project 9 114583933 114610517 + antisense antisense MGP_C57BL6NJ_T0093333.1 MGP_C57BL6NJ_G0035432.1 mouse_genomes_project 9 65685480 65714328 + MGP_C57BL6NJ_P0093333 Tipin protein_coding protein_coding MGP_C57BL6NJ_T0019064.1 MGP_C57BL6NJ_G0016158.1 mouse_genomes_project 9 128811677 128831633 - A730085K08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0095014.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112994393 113003436 - MGP_C57BL6NJ_P0095014 Apeh protein_coding protein_coding MGP_C57BL6NJ_T0095015.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112994403 112995018 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095016.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112994403 113003456 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095017.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112994903 112995458 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095018.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112995137 112997510 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095019.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 112995765 113003466 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095020.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 113001333 113003010 - Apeh protein_coding retained_intron MGP_C57BL6NJ_T0095021.1 MGP_C57BL6NJ_G0035779.1 mouse_genomes_project 9 113001612 113003469 - MGP_C57BL6NJ_P0095021 Apeh protein_coding protein_coding MGP_C57BL6NJ_T0094357.1 MGP_C57BL6NJ_G0035669.1 mouse_genomes_project 9 104168969 104171034 - MGP_C57BL6NJ_P0094357 Sox14 protein_coding protein_coding MGP_C57BL6NJ_T0094358.1 MGP_C57BL6NJ_G0035669.1 mouse_genomes_project 9 104169083 104170519 - MGP_C57BL6NJ_P0094358 Sox14 protein_coding protein_coding MGP_C57BL6NJ_T0093398.1 MGP_C57BL6NJ_G0035456.1 mouse_genomes_project 9 67172961 67204819 + MGP_C57BL6NJ_P0093398 Rbpms2 protein_coding protein_coding MGP_C57BL6NJ_T0093399.1 MGP_C57BL6NJ_G0035456.1 mouse_genomes_project 9 67173853 67204796 + MGP_C57BL6NJ_P0093399 Rbpms2 protein_coding protein_coding MGP_C57BL6NJ_T0093400.1 MGP_C57BL6NJ_G0035456.1 mouse_genomes_project 9 67174068 67202417 + MGP_C57BL6NJ_P0093400 Rbpms2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094991.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951363 112992336 - MGP_C57BL6NJ_P0094991 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0094992.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951494 112988312 - MGP_C57BL6NJ_P0094992 Rnf123 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0094993.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951501 112988291 - MGP_C57BL6NJ_P0094993 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0094994.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951506 112988730 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0094995.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951506 112988291 - MGP_C57BL6NJ_P0094995 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0094996.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951506 112988365 - MGP_C57BL6NJ_P0094996 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0094997.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112951522 112952060 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0094998.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112952054 112959560 - MGP_C57BL6NJ_P0094998 Rnf123 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0094999.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112952063 112988365 - MGP_C57BL6NJ_P0094999 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0095000.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112952071 112952529 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0095002.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112955728 112988718 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0095003.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112955895 112956869 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0095004.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112956389 112959595 - MGP_C57BL6NJ_P0095004 Rnf123 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095005.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112957997 112961819 - Rnf123 protein_coding retained_intron MGP_C57BL6NJ_T0095006.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112970989 112987259 - MGP_C57BL6NJ_P0095006 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0095007.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112971048 112988295 - MGP_C57BL6NJ_P0095007 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0095008.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112971856 112988256 - MGP_C57BL6NJ_P0095008 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0095009.1 MGP_C57BL6NJ_G0035776.1 mouse_genomes_project 9 112986711 112992334 - MGP_C57BL6NJ_P0095009 Rnf123 protein_coding protein_coding MGP_C57BL6NJ_T0093078.1 MGP_C57BL6NJ_G0035367.1 mouse_genomes_project 9 58495921 58502640 - MGP_C57BL6NJ_P0093078 Cyp1a2 protein_coding protein_coding MGP_C57BL6NJ_T0016623.1 MGP_C57BL6NJ_G0014668.1 mouse_genomes_project 9 110862282 110862886 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0093826.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80660227 80687197 - MGP_C57BL6NJ_P0093826 Fbxo9 protein_coding protein_coding MGP_C57BL6NJ_T0093827.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80660230 80687606 - MGP_C57BL6NJ_P0093827 Fbxo9 protein_coding protein_coding MGP_C57BL6NJ_T0093828.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80660569 80663370 - Fbxo9 protein_coding retained_intron MGP_C57BL6NJ_T0093829.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80664336 80666175 - Fbxo9 protein_coding retained_intron MGP_C57BL6NJ_T0093830.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80674017 80687145 - MGP_C57BL6NJ_P0093830 Fbxo9 protein_coding protein_coding MGP_C57BL6NJ_T0093831.1 MGP_C57BL6NJ_G0035548.1 mouse_genomes_project 9 80678334 80687128 - MGP_C57BL6NJ_P0093831 Fbxo9 protein_coding protein_coding MGP_C57BL6NJ_T0095479.1 MGP_C57BL6NJ_G0035859.1 mouse_genomes_project 9 116143175 116149660 + MGP_C57BL6NJ_P0095479 Prss50 protein_coding protein_coding MGP_C57BL6NJ_T0095480.1 MGP_C57BL6NJ_G0035859.1 mouse_genomes_project 9 116146396 116149659 + MGP_C57BL6NJ_P0095480 Prss50 protein_coding protein_coding MGP_C57BL6NJ_T0095304.1 MGP_C57BL6NJ_G0035827.1 mouse_genomes_project 9 114465449 114484387 - MGP_C57BL6NJ_P0095304 Fbxw16 protein_coding protein_coding MGP_C57BL6NJ_T0095305.1 MGP_C57BL6NJ_G0035827.1 mouse_genomes_project 9 114465454 114484403 - Fbxw16 protein_coding retained_intron MGP_C57BL6NJ_T0095733.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126294905 126311086 + MGP_C57BL6NJ_P0095733 Slc25a38 protein_coding protein_coding MGP_C57BL6NJ_T0095734.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126294936 126307281 + MGP_C57BL6NJ_P0095734 Slc25a38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095735.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126294939 126306910 + Slc25a38 protein_coding processed_transcript MGP_C57BL6NJ_T0095736.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126294939 126296129 + Slc25a38 protein_coding processed_transcript MGP_C57BL6NJ_T0095737.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126294955 126310233 + MGP_C57BL6NJ_P0095737 Slc25a38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095738.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126299973 126308800 + MGP_C57BL6NJ_P0095738 Slc25a38 protein_coding protein_coding MGP_C57BL6NJ_T0095739.1 MGP_C57BL6NJ_G0035931.1 mouse_genomes_project 9 126300112 126306885 + Slc25a38 protein_coding processed_transcript MGP_C57BL6NJ_T0095550.1 MGP_C57BL6NJ_G0035873.1 mouse_genomes_project 9 116914198 117059299 - MGP_C57BL6NJ_P0095550 Stac protein_coding protein_coding MGP_C57BL6NJ_T0095551.1 MGP_C57BL6NJ_G0035873.1 mouse_genomes_project 9 116914198 117059176 - MGP_C57BL6NJ_P0095551 Stac protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0095552.1 MGP_C57BL6NJ_G0035873.1 mouse_genomes_project 9 116993492 117059280 - Stac protein_coding processed_transcript MGP_C57BL6NJ_T0091818.1 MGP_C57BL6NJ_G0034884.1 mouse_genomes_project 9 17054369 17055311 + MGP_C57BL6NJ_P0091818 Olfr845 protein_coding protein_coding MGP_C57BL6NJ_T0095740.1 MGP_C57BL6NJ_G0035932.1 mouse_genomes_project 9 126315385 126321404 + MGP_C57BL6NJ_P0095740 Rpsa protein_coding protein_coding MGP_C57BL6NJ_T0095741.1 MGP_C57BL6NJ_G0035932.1 mouse_genomes_project 9 126315439 126320602 + MGP_C57BL6NJ_P0095741 Rpsa protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011305.1 MGP_C57BL6NJ_G0009390.1 mouse_genomes_project 9 18797213 18797288 - Mir7081 miRNA miRNA MGP_C57BL6NJ_T0009522.1 MGP_C57BL6NJ_G0007650.1 mouse_genomes_project 9 112461385 112461837 + Gm38150 lincRNA lincRNA MGP_C57BL6NJ_T0091841.1 MGP_C57BL6NJ_G0034907.1 mouse_genomes_project 9 18203111 18232003 - MGP_C57BL6NJ_P0091841 Zfp560 protein_coding protein_coding MGP_C57BL6NJ_T0091842.1 MGP_C57BL6NJ_G0034907.1 mouse_genomes_project 9 18211638 18232003 - Zfp560 protein_coding retained_intron MGP_C57BL6NJ_T0009511.1 MGP_C57BL6NJ_G0007641.1 mouse_genomes_project 9 107034566 107044704 + Gm29387 lincRNA lincRNA MGP_C57BL6NJ_T0005642.1 MGP_C57BL6NJ_G0004766.1 mouse_genomes_project 9 81287016 81287771 - 4921509A06Rik antisense antisense MGP_C57BL6NJ_T0095710.1 MGP_C57BL6NJ_G0035918.1 mouse_genomes_project 9 125459409 125499193 + MGP_C57BL6NJ_P0095710 Xylb protein_coding protein_coding MGP_C57BL6NJ_T0092917.1 MGP_C57BL6NJ_G0035310.1 mouse_genomes_project 9 54421591 54424139 + MGP_C57BL6NJ_P0092917 Gm16380 protein_coding protein_coding MGP_C57BL6NJ_T0102324.1 MGP_C57BL6NJ_G0040284.1 mouse_genomes_project 9 39475139 39475898 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102325.1 MGP_C57BL6NJ_G0040284.1 mouse_genomes_project 9 39475329 39480109 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0009480.1 MGP_C57BL6NJ_G0007617.1 mouse_genomes_project 9 91539917 91543058 + Gm28231 lincRNA lincRNA MGP_C57BL6NJ_T0102323.1 MGP_C57BL6NJ_G0040283.1 mouse_genomes_project 9 12190957 12191305 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0009465.1 MGP_C57BL6NJ_G0007605.1 mouse_genomes_project 9 77733133 77740830 + 4933433G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0009466.1 MGP_C57BL6NJ_G0007605.1 mouse_genomes_project 9 77733133 77738658 + 4933433G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0100725.1 MGP_C57BL6NJ_G0038771.1 mouse_genomes_project 9 74165219 74165318 - Gm25045 snRNA snRNA MGP_C57BL6NJ_T0102017.1 MGP_C57BL6NJ_G0040063.1 mouse_genomes_project 9 67528899 67529031 - Gm22657 snoRNA snoRNA MGP_C57BL6NJ_T0092366.1 MGP_C57BL6NJ_G0035106.1 mouse_genomes_project 9 38042346 38045615 + MGP_C57BL6NJ_P0092366 Olfr921 protein_coding protein_coding MGP_C57BL6NJ_T0095390.1 MGP_C57BL6NJ_G0035841.1 mouse_genomes_project 9 115430529 115446610 + MGP_C57BL6NJ_P0095390 Cspg5 protein_coding protein_coding MGP_C57BL6NJ_T0095391.1 MGP_C57BL6NJ_G0035841.1 mouse_genomes_project 9 115432229 115434352 + Cspg5 protein_coding retained_intron MGP_C57BL6NJ_T0095392.1 MGP_C57BL6NJ_G0035841.1 mouse_genomes_project 9 115432277 115446598 + MGP_C57BL6NJ_P0095392 Cspg5 protein_coding protein_coding MGP_C57BL6NJ_T0095393.1 MGP_C57BL6NJ_G0035841.1 mouse_genomes_project 9 115432344 115446613 + MGP_C57BL6NJ_P0095393 Cspg5 protein_coding protein_coding MGP_C57BL6NJ_T0098916.1 MGP_C57BL6NJ_G0036980.1 mouse_genomes_project 9 58277169 58277723 + pseudogene pseudogene MGP_C57BL6NJ_T0092770.1 MGP_C57BL6NJ_G0035263.1 mouse_genomes_project 9 49455173 49465385 + MGP_C57BL6NJ_P0092770 Gm4894 protein_coding protein_coding MGP_C57BL6NJ_T0009942.1 MGP_C57BL6NJ_G0008027.1 mouse_genomes_project 11 106450668 106450738 - Mir7116 miRNA miRNA MGP_C57BL6NJ_T0032745.1 MGP_C57BL6NJ_G0019523.1 mouse_genomes_project 11 105867253 105869141 - MGP_C57BL6NJ_P0032745 Krtap16-1 protein_coding protein_coding MGP_C57BL6NJ_T0029714.1 MGP_C57BL6NJ_G0018750.1 mouse_genomes_project 11 60066879 60067939 - MGP_C57BL6NJ_P0029714 Olfr329-ps protein_coding protein_coding MGP_C57BL6NJ_T0029715.1 MGP_C57BL6NJ_G0018750.1 mouse_genomes_project 11 60066879 60069371 - MGP_C57BL6NJ_P0029715 Olfr329-ps protein_coding protein_coding MGP_C57BL6NJ_T0029716.1 MGP_C57BL6NJ_G0018750.1 mouse_genomes_project 11 60067431 60068647 - MGP_C57BL6NJ_P0029716 Olfr329-ps protein_coding protein_coding MGP_C57BL6NJ_T0012879.1 MGP_C57BL6NJ_G0010924.1 mouse_genomes_project 11 43519206 43519496 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029597.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 55974703 56010094 - MGP_C57BL6NJ_P0029597 Lyrm7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029598.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 55988320 56009786 - MGP_C57BL6NJ_P0029598 Lyrm7 protein_coding protein_coding MGP_C57BL6NJ_T0029599.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 55988321 56009766 - MGP_C57BL6NJ_P0029599 Lyrm7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029600.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 55989600 56000916 - Lyrm7 protein_coding retained_intron MGP_C57BL6NJ_T0029601.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 55989640 56009787 - Lyrm7 protein_coding processed_transcript MGP_C57BL6NJ_T0029602.1 MGP_C57BL6NJ_G0018711.1 mouse_genomes_project 11 56000603 56009763 - Lyrm7 protein_coding retained_intron MGP_C57BL6NJ_T0006549.1 MGP_C57BL6NJ_G0005454.1 mouse_genomes_project 11 130189321 130196535 + Gm12589 lincRNA lincRNA MGP_C57BL6NJ_T0034196.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124743595 124765653 + MGP_C57BL6NJ_P0034196 Mfsd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034197.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744450 124750079 + Mfsd11 protein_coding retained_intron MGP_C57BL6NJ_T0034198.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744629 124745214 + Mfsd11 protein_coding processed_transcript MGP_C57BL6NJ_T0034199.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744917 124765660 + MGP_C57BL6NJ_P0034199 Mfsd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034200.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744934 124745412 + Mfsd11 protein_coding retained_intron MGP_C57BL6NJ_T0034201.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744975 124766515 + MGP_C57BL6NJ_P0034201 Mfsd11 protein_coding protein_coding MGP_C57BL6NJ_T0034202.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124744984 124745872 + Mfsd11 protein_coding retained_intron MGP_C57BL6NJ_T0034203.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124745050 124766398 + MGP_C57BL6NJ_P0034203 Mfsd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034204.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124745181 124765108 + MGP_C57BL6NJ_P0034204 Mfsd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034205.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124745233 124764886 + MGP_C57BL6NJ_P0034205 Mfsd11 protein_coding protein_coding MGP_C57BL6NJ_T0034206.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124750106 124752635 + Mfsd11 protein_coding retained_intron MGP_C57BL6NJ_T0034207.1 MGP_C57BL6NJ_G0019835.1 mouse_genomes_project 11 124759307 124764778 + Mfsd11 protein_coding processed_transcript MGP_C57BL6NJ_T0034520.1 MGP_C57BL6NJ_G0019898.1 mouse_genomes_project 11 128780739 128789025 + MGP_C57BL6NJ_P0034520 Gcgr protein_coding protein_coding MGP_C57BL6NJ_T0034521.1 MGP_C57BL6NJ_G0019898.1 mouse_genomes_project 11 128780784 128789027 + Gcgr protein_coding processed_transcript MGP_C57BL6NJ_T0034522.1 MGP_C57BL6NJ_G0019898.1 mouse_genomes_project 11 128780814 128789024 + Gcgr protein_coding processed_transcript MGP_C57BL6NJ_T0034523.1 MGP_C57BL6NJ_G0019898.1 mouse_genomes_project 11 128784720 128786750 + Gcgr protein_coding processed_transcript MGP_C57BL6NJ_T0034524.1 MGP_C57BL6NJ_G0019898.1 mouse_genomes_project 11 128784797 128788738 + MGP_C57BL6NJ_P0034524 Gcgr protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032988.1 MGP_C57BL6NJ_G0019585.1 mouse_genomes_project 11 107412193 107415989 + MGP_C57BL6NJ_P0032988 Psme3 protein_coding protein_coding MGP_C57BL6NJ_T0032989.1 MGP_C57BL6NJ_G0019585.1 mouse_genomes_project 11 107412193 107419520 + MGP_C57BL6NJ_P0032989 Psme3 protein_coding protein_coding MGP_C57BL6NJ_T0032990.1 MGP_C57BL6NJ_G0019585.1 mouse_genomes_project 11 107412957 107416575 + MGP_C57BL6NJ_P0032990 Psme3 protein_coding protein_coding MGP_C57BL6NJ_T0032991.1 MGP_C57BL6NJ_G0019585.1 mouse_genomes_project 11 107413003 107416005 + Psme3 protein_coding processed_transcript MGP_C57BL6NJ_T0032992.1 MGP_C57BL6NJ_G0019585.1 mouse_genomes_project 11 107415814 107418082 + Psme3 protein_coding processed_transcript MGP_C57BL6NJ_T0099751.1 MGP_C57BL6NJ_G0037797.1 mouse_genomes_project 11 48291317 48291478 - Gm23039 snRNA snRNA MGP_C57BL6NJ_T0099769.1 MGP_C57BL6NJ_G0037815.1 mouse_genomes_project 11 78028691 78028782 - Gm22733 snRNA snRNA MGP_C57BL6NJ_T0029706.1 MGP_C57BL6NJ_G0018744.1 mouse_genomes_project 11 59929272 59934186 + MGP_C57BL6NJ_P0029706 1810065E05Rik protein_coding protein_coding MGP_C57BL6NJ_T0029846.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61729268 61808872 - MGP_C57BL6NJ_P0029846 Pemt protein_coding protein_coding MGP_C57BL6NJ_T0029847.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61729272 61730169 - Pemt protein_coding processed_transcript MGP_C57BL6NJ_T0029848.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61729485 61798980 - Pemt protein_coding processed_transcript MGP_C57BL6NJ_T0029849.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61729502 61802243 - MGP_C57BL6NJ_P0029849 Pemt protein_coding protein_coding MGP_C57BL6NJ_T0029850.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61732812 61808926 - MGP_C57BL6NJ_P0029850 Pemt protein_coding protein_coding MGP_C57BL6NJ_T0029851.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61735517 61781221 - Pemt protein_coding processed_transcript MGP_C57BL6NJ_T0029852.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61735537 61743989 - Pemt protein_coding processed_transcript MGP_C57BL6NJ_T0029853.1 MGP_C57BL6NJ_G0018803.1 mouse_genomes_project 11 61806981 61808922 - Pemt protein_coding processed_transcript MGP_C57BL6NJ_T0032256.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100292494 100316963 - MGP_C57BL6NJ_P0032256 Itga3 protein_coding protein_coding MGP_C57BL6NJ_T0032257.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100292494 100324479 - MGP_C57BL6NJ_P0032257 Itga3 protein_coding protein_coding MGP_C57BL6NJ_T0032258.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100292494 100324566 - MGP_C57BL6NJ_P0032258 Itga3 protein_coding protein_coding MGP_C57BL6NJ_T0032259.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100301257 100304161 - Itga3 protein_coding retained_intron MGP_C57BL6NJ_T0032260.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100306230 100310038 - Itga3 protein_coding retained_intron MGP_C57BL6NJ_T0032261.1 MGP_C57BL6NJ_G0019369.1 mouse_genomes_project 11 100310925 100324562 - MGP_C57BL6NJ_P0032261 Itga3 protein_coding protein_coding MGP_C57BL6NJ_T0006539.1 MGP_C57BL6NJ_G0005444.1 mouse_genomes_project 11 127192798 127197091 + Gm26508 lincRNA lincRNA MGP_C57BL6NJ_T0011571.1 MGP_C57BL6NJ_G0009656.1 mouse_genomes_project 11 101587681 101587761 - Gm27898 misc_RNA misc_RNA MGP_C57BL6NJ_T0028964.1 MGP_C57BL6NJ_G0018543.1 mouse_genomes_project 11 32974417 33024656 - MGP_C57BL6NJ_P0028964 Kcnip1 protein_coding protein_coding MGP_C57BL6NJ_T0028965.1 MGP_C57BL6NJ_G0018543.1 mouse_genomes_project 11 32974425 33205140 - MGP_C57BL6NJ_P0028965 Kcnip1 protein_coding protein_coding MGP_C57BL6NJ_T0028966.1 MGP_C57BL6NJ_G0018543.1 mouse_genomes_project 11 32974425 33205198 - MGP_C57BL6NJ_P0028966 Kcnip1 protein_coding protein_coding MGP_C57BL6NJ_T0028967.1 MGP_C57BL6NJ_G0018543.1 mouse_genomes_project 11 32985815 33360726 - Kcnip1 protein_coding processed_transcript MGP_C57BL6NJ_T0028968.1 MGP_C57BL6NJ_G0018543.1 mouse_genomes_project 11 32986139 33360562 - Kcnip1 protein_coding processed_transcript MGP_C57BL6NJ_T0033840.1 MGP_C57BL6NJ_G0019773.1 mouse_genomes_project 11 122972485 122979333 - MGP_C57BL6NJ_P0033840 Ush1g protein_coding protein_coding MGP_C57BL6NJ_T0003301.1 MGP_C57BL6NJ_G0003052.1 mouse_genomes_project 11 46602093 46604827 + Gm12167 antisense antisense MGP_C57BL6NJ_T0006374.1 MGP_C57BL6NJ_G0005318.1 mouse_genomes_project 11 31271633 31277601 - Gm12108 lincRNA lincRNA MGP_C57BL6NJ_T0032563.1 MGP_C57BL6NJ_G0019448.1 mouse_genomes_project 11 103960578 103969301 + MGP_C57BL6NJ_P0032563 Ppp1r1b protein_coding protein_coding MGP_C57BL6NJ_T0032564.1 MGP_C57BL6NJ_G0019448.1 mouse_genomes_project 11 103962339 103969286 + Ppp1r1b protein_coding retained_intron MGP_C57BL6NJ_T0032565.1 MGP_C57BL6NJ_G0019448.1 mouse_genomes_project 11 103962699 103968889 + Ppp1r1b protein_coding retained_intron MGP_C57BL6NJ_T0032566.1 MGP_C57BL6NJ_G0019448.1 mouse_genomes_project 11 103962973 103968784 + Ppp1r1b protein_coding processed_transcript MGP_C57BL6NJ_T0032567.1 MGP_C57BL6NJ_G0019448.1 mouse_genomes_project 11 103966080 103968601 + Ppp1r1b protein_coding processed_transcript MGP_C57BL6NJ_T0003416.1 MGP_C57BL6NJ_G0003145.1 mouse_genomes_project 11 100597498 100598904 - Gm11521 antisense antisense MGP_C57BL6NJ_T0009881.1 MGP_C57BL6NJ_G0007966.1 mouse_genomes_project 11 62073068 62073186 - Gm27711 miRNA miRNA MGP_C57BL6NJ_T0034226.1 MGP_C57BL6NJ_G0019839.1 mouse_genomes_project 11 125458659 125463306 + MGP_C57BL6NJ_P0034226 Gm11733 protein_coding protein_coding MGP_C57BL6NJ_T0031937.1 MGP_C57BL6NJ_G0019292.1 mouse_genomes_project 11 91359284 91374652 + MGP_C57BL6NJ_P0031937 Ska2 protein_coding protein_coding MGP_C57BL6NJ_T0031938.1 MGP_C57BL6NJ_G0019292.1 mouse_genomes_project 11 91359301 91374651 + Ska2 protein_coding processed_transcript MGP_C57BL6NJ_T0031939.1 MGP_C57BL6NJ_G0019292.1 mouse_genomes_project 11 91365919 91372124 + Ska2 protein_coding processed_transcript MGP_C57BL6NJ_T0003312.1 MGP_C57BL6NJ_G0003062.1 mouse_genomes_project 11 54441097 54442332 - Gm12212 antisense antisense MGP_C57BL6NJ_T0031185.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78807003 78827411 + MGP_C57BL6NJ_P0031185 Inpp5k protein_coding protein_coding MGP_C57BL6NJ_T0031186.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78807044 78827403 + Inpp5k protein_coding retained_intron MGP_C57BL6NJ_T0031187.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78807052 78811284 + Inpp5k protein_coding retained_intron MGP_C57BL6NJ_T0031188.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78807070 78827405 + MGP_C57BL6NJ_P0031188 Inpp5k protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031189.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78815247 78825816 + Inpp5k protein_coding retained_intron MGP_C57BL6NJ_T0031190.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78825325 78826271 + Inpp5k protein_coding processed_transcript MGP_C57BL6NJ_T0031191.1 MGP_C57BL6NJ_G0019110.1 mouse_genomes_project 11 78825385 78826404 + MGP_C57BL6NJ_P0031191 Inpp5k protein_coding protein_coding MGP_C57BL6NJ_T0012921.1 MGP_C57BL6NJ_G0010966.1 mouse_genomes_project 11 59286378 59286669 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102761.1 MGP_C57BL6NJ_G0040556.1 mouse_genomes_project 11 100063798 100064533 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0034110.1 MGP_C57BL6NJ_G0019819.1 mouse_genomes_project 11 124232987 124243408 + MGP_C57BL6NJ_P0034110 Ubald2 protein_coding protein_coding MGP_C57BL6NJ_T0034111.1 MGP_C57BL6NJ_G0019819.1 mouse_genomes_project 11 124233402 124239412 + Ubald2 protein_coding processed_transcript MGP_C57BL6NJ_T0006443.1 MGP_C57BL6NJ_G0005377.1 mouse_genomes_project 11 79890931 79898665 + Gm26780 lincRNA lincRNA MGP_C57BL6NJ_T0031808.1 MGP_C57BL6NJ_G0019264.1 mouse_genomes_project 11 88893560 88905277 - MGP_C57BL6NJ_P0031808 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031809.1 MGP_C57BL6NJ_G0019264.1 mouse_genomes_project 11 88894830 88905013 - MGP_C57BL6NJ_P0031809 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032776.1 MGP_C57BL6NJ_G0019541.1 mouse_genomes_project 11 106288258 106290837 + MGP_C57BL6NJ_P0032776 Gast protein_coding protein_coding MGP_C57BL6NJ_T0101016.1 MGP_C57BL6NJ_G0039062.1 mouse_genomes_project 11 10331897 10332038 + Gm22156 snoRNA snoRNA MGP_C57BL6NJ_T0006379.1 MGP_C57BL6NJ_G0005323.1 mouse_genomes_project 11 33510243 33511838 + Gm12121 lincRNA lincRNA MGP_C57BL6NJ_T0029480.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54435949 54446485 + MGP_C57BL6NJ_P0029480 Shroom1 protein_coding protein_coding MGP_C57BL6NJ_T0029481.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54435974 54446017 + MGP_C57BL6NJ_P0029481 Shroom1 protein_coding protein_coding MGP_C57BL6NJ_T0029482.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54435990 54446474 + Shroom1 protein_coding retained_intron MGP_C57BL6NJ_T0029483.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54435993 54446220 + Shroom1 protein_coding retained_intron MGP_C57BL6NJ_T0029484.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54436023 54446021 + MGP_C57BL6NJ_P0029484 Shroom1 protein_coding protein_coding MGP_C57BL6NJ_T0029485.1 MGP_C57BL6NJ_G0018686.1 mouse_genomes_project 11 54444214 54444572 + Shroom1 protein_coding processed_transcript MGP_C57BL6NJ_T0031339.1 MGP_C57BL6NJ_G0019143.1 mouse_genomes_project 11 80908797 80994261 - MGP_C57BL6NJ_P0031339 Taok1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031427.1 MGP_C57BL6NJ_G0019158.1 mouse_genomes_project 11 81634179 81636325 - Rpl23a protein_coding retained_intron MGP_C57BL6NJ_T0031428.1 MGP_C57BL6NJ_G0019158.1 mouse_genomes_project 11 81634182 81634878 - Rpl23a protein_coding retained_intron MGP_C57BL6NJ_T0031429.1 MGP_C57BL6NJ_G0019158.1 mouse_genomes_project 11 81634182 81636832 - MGP_C57BL6NJ_P0031429 Rpl23a protein_coding protein_coding MGP_C57BL6NJ_T0003494.1 MGP_C57BL6NJ_G0003209.1 mouse_genomes_project 11 124273219 124283087 + Gm11739 antisense antisense MGP_C57BL6NJ_T0029582.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660687 55839995 + MGP_C57BL6NJ_P0029582 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0029583.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660729 55690700 + Rapgef6 protein_coding processed_transcript MGP_C57BL6NJ_T0029584.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660730 55837689 + MGP_C57BL6NJ_P0029584 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0029585.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660730 55770417 + MGP_C57BL6NJ_P0029585 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0029586.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660751 55699966 + Rapgef6 protein_coding processed_transcript MGP_C57BL6NJ_T0029587.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55660890 55840004 + MGP_C57BL6NJ_P0029587 Rapgef6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029588.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55729196 55774272 + Rapgef6 protein_coding processed_transcript MGP_C57BL6NJ_T0029589.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55757773 55826482 + MGP_C57BL6NJ_P0029589 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0029590.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55757773 55826561 + MGP_C57BL6NJ_P0029590 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0029591.1 MGP_C57BL6NJ_G0018709.1 mouse_genomes_project 11 55829888 55837196 + MGP_C57BL6NJ_P0029591 Rapgef6 protein_coding protein_coding MGP_C57BL6NJ_T0030973.1 MGP_C57BL6NJ_G0019039.1 mouse_genomes_project 11 75886669 75902737 + MGP_C57BL6NJ_P0030973 P2rx1 protein_coding protein_coding MGP_C57BL6NJ_T0030974.1 MGP_C57BL6NJ_G0019039.1 mouse_genomes_project 11 75886881 75901663 + MGP_C57BL6NJ_P0030974 P2rx1 protein_coding protein_coding MGP_C57BL6NJ_T0030975.1 MGP_C57BL6NJ_G0019039.1 mouse_genomes_project 11 75897327 75902734 + P2rx1 protein_coding retained_intron MGP_C57BL6NJ_T0012835.1 MGP_C57BL6NJ_G0010880.1 mouse_genomes_project 11 25668014 25668538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101090.1 MGP_C57BL6NJ_G0039136.1 mouse_genomes_project 11 127936644 127936724 + Gm23663 snoRNA snoRNA MGP_C57BL6NJ_T0029747.1 MGP_C57BL6NJ_G0018772.1 mouse_genomes_project 11 60525909 60557983 - MGP_C57BL6NJ_P0029747 Zfp39 protein_coding protein_coding MGP_C57BL6NJ_T0101026.1 MGP_C57BL6NJ_G0039072.1 mouse_genomes_project 11 26171766 26171898 - Gm25387 snoRNA snoRNA MGP_C57BL6NJ_T0006406.1 MGP_C57BL6NJ_G0005347.1 mouse_genomes_project 11 59394203 59397107 - Gm12249 lincRNA lincRNA MGP_C57BL6NJ_T0012814.1 MGP_C57BL6NJ_G0010859.1 mouse_genomes_project 11 19526509 19526803 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099784.1 MGP_C57BL6NJ_G0037830.1 mouse_genomes_project 11 91737718 91737825 - Gm23137 snRNA snRNA MGP_C57BL6NJ_T0099766.1 MGP_C57BL6NJ_G0037812.1 mouse_genomes_project 11 75764227 75764389 + Gm26121 snRNA snRNA MGP_C57BL6NJ_T0031312.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80822181 80832200 + MGP_C57BL6NJ_P0031312 Coro6 protein_coding protein_coding MGP_C57BL6NJ_T0031313.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80822415 80823730 + MGP_C57BL6NJ_P0031313 Coro6 protein_coding protein_coding MGP_C57BL6NJ_T0031314.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80822471 80831217 + MGP_C57BL6NJ_P0031314 Coro6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031315.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80823611 80831317 + MGP_C57BL6NJ_P0031315 Coro6 protein_coding protein_coding MGP_C57BL6NJ_T0031316.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80823611 80831317 + MGP_C57BL6NJ_P0031316 Coro6 protein_coding protein_coding MGP_C57BL6NJ_T0031317.1 MGP_C57BL6NJ_G0019137.1 mouse_genomes_project 11 80823686 80831217 + MGP_C57BL6NJ_P0031317 Coro6 protein_coding protein_coding MGP_C57BL6NJ_T0032772.1 MGP_C57BL6NJ_G0019540.1 mouse_genomes_project 11 106270346 106272777 + MGP_C57BL6NJ_P0032772 Eif1 protein_coding protein_coding MGP_C57BL6NJ_T0032773.1 MGP_C57BL6NJ_G0019540.1 mouse_genomes_project 11 106270822 106271603 + MGP_C57BL6NJ_P0032773 Eif1 protein_coding protein_coding MGP_C57BL6NJ_T0032774.1 MGP_C57BL6NJ_G0019540.1 mouse_genomes_project 11 106271131 106271963 + Eif1 protein_coding processed_transcript MGP_C57BL6NJ_T0032775.1 MGP_C57BL6NJ_G0019540.1 mouse_genomes_project 11 106271321 106272430 + MGP_C57BL6NJ_P0032775 Eif1 protein_coding protein_coding MGP_C57BL6NJ_T0006490.1 MGP_C57BL6NJ_G0005409.1 mouse_genomes_project 11 101638024 101651370 + Gm53 lincRNA lincRNA MGP_C57BL6NJ_T0006491.1 MGP_C57BL6NJ_G0005409.1 mouse_genomes_project 11 101638551 101651584 + Gm53 lincRNA lincRNA MGP_C57BL6NJ_T0006492.1 MGP_C57BL6NJ_G0005409.1 mouse_genomes_project 11 101639439 101648579 + Gm53 lincRNA lincRNA MGP_C57BL6NJ_T0006493.1 MGP_C57BL6NJ_G0005409.1 mouse_genomes_project 11 101648495 101651754 + Gm53 lincRNA lincRNA MGP_C57BL6NJ_T0033907.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123254126 123276227 + MGP_C57BL6NJ_P0033907 Nup85 protein_coding protein_coding MGP_C57BL6NJ_T0033908.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123254217 123259584 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0033909.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123259807 123274085 + MGP_C57BL6NJ_P0033909 Nup85 protein_coding protein_coding MGP_C57BL6NJ_T0033910.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123268207 123274281 + MGP_C57BL6NJ_P0033910 Nup85 protein_coding protein_coding MGP_C57BL6NJ_T0033911.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123272745 123273661 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0033912.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123273337 123274276 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0033913.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123273882 123276148 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0033914.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123273989 123274520 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0033915.1 MGP_C57BL6NJ_G0019786.1 mouse_genomes_project 11 123275298 123276025 + Nup85 protein_coding processed_transcript MGP_C57BL6NJ_T0098972.1 MGP_C57BL6NJ_G0037036.1 mouse_genomes_project 11 124124532 124124648 - n-R5s74 rRNA rRNA MGP_C57BL6NJ_T0012922.1 MGP_C57BL6NJ_G0010967.1 mouse_genomes_project 11 59536625 59537295 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034233.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125767009 125781365 - MGP_C57BL6NJ_P0034233 Tmc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034234.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125767009 125782356 - MGP_C57BL6NJ_P0034234 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0034235.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125767081 125770095 - Tmc6 protein_coding retained_intron MGP_C57BL6NJ_T0034236.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125771101 125774057 - MGP_C57BL6NJ_P0034236 Tmc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034237.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125776370 125782338 - MGP_C57BL6NJ_P0034237 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0034238.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125776730 125781367 - MGP_C57BL6NJ_P0034238 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0034239.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125780458 125782661 - MGP_C57BL6NJ_P0034239 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0034240.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125780654 125783915 - MGP_C57BL6NJ_P0034240 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0034241.1 MGP_C57BL6NJ_G0019841.1 mouse_genomes_project 11 125780908 125782375 - MGP_C57BL6NJ_P0034241 Tmc6 protein_coding protein_coding MGP_C57BL6NJ_T0032878.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106877998 106903499 - MGP_C57BL6NJ_P0032878 Stat3 protein_coding protein_coding MGP_C57BL6NJ_T0032879.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106879414 106881505 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032880.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106879428 106933019 - MGP_C57BL6NJ_P0032880 Stat3 protein_coding protein_coding MGP_C57BL6NJ_T0032881.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106879873 106933118 - MGP_C57BL6NJ_P0032881 Stat3 protein_coding protein_coding MGP_C57BL6NJ_T0032882.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106880670 106884936 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032883.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106884221 106884995 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032884.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106884716 106885626 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032885.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106885163 106890362 - Stat3 protein_coding processed_transcript MGP_C57BL6NJ_T0032886.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106885680 106886315 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032887.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106885682 106889583 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032888.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106893791 106896530 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032889.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106896198 106896965 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0032890.1 MGP_C57BL6NJ_G0019564.1 mouse_genomes_project 11 106896774 106899343 - Stat3 protein_coding retained_intron MGP_C57BL6NJ_T0013019.1 MGP_C57BL6NJ_G0011064.1 mouse_genomes_project 11 96700481 96701430 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012945.1 MGP_C57BL6NJ_G0010990.1 mouse_genomes_project 11 64741171 64741469 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032766.1 MGP_C57BL6NJ_G0019536.1 mouse_genomes_project 11 106122556 106125425 - Krt14 protein_coding processed_transcript MGP_C57BL6NJ_T0032767.1 MGP_C57BL6NJ_G0019536.1 mouse_genomes_project 11 106122556 106126919 - MGP_C57BL6NJ_P0032767 Krt14 protein_coding protein_coding MGP_C57BL6NJ_T0032065.1 MGP_C57BL6NJ_G0019322.1 mouse_genomes_project 11 93552609 93575548 + MGP_C57BL6NJ_P0032065 Trim25 protein_coding protein_coding MGP_C57BL6NJ_T0032066.1 MGP_C57BL6NJ_G0019322.1 mouse_genomes_project 11 93552609 93575548 + MGP_C57BL6NJ_P0032066 Trim25 protein_coding protein_coding MGP_C57BL6NJ_T0032067.1 MGP_C57BL6NJ_G0019322.1 mouse_genomes_project 11 93552609 93568957 + MGP_C57BL6NJ_P0032067 Trim25 protein_coding protein_coding MGP_C57BL6NJ_T0102749.1 MGP_C57BL6NJ_G0040544.1 mouse_genomes_project 11 77276543 77277549 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032347.1 MGP_C57BL6NJ_G0019397.1 mouse_genomes_project 11 101686830 101695834 + MGP_C57BL6NJ_P0032347 Hoxb6 protein_coding protein_coding MGP_C57BL6NJ_T0032348.1 MGP_C57BL6NJ_G0019397.1 mouse_genomes_project 11 101693434 101695833 + MGP_C57BL6NJ_P0032348 Hoxb6 protein_coding protein_coding MGP_C57BL6NJ_T0031280.1 MGP_C57BL6NJ_G0019131.1 mouse_genomes_project 11 80202739 80218325 + MGP_C57BL6NJ_P0031280 Tmigd1 protein_coding protein_coding MGP_C57BL6NJ_T0031281.1 MGP_C57BL6NJ_G0019131.1 mouse_genomes_project 11 80205055 80211808 + MGP_C57BL6NJ_P0031281 Tmigd1 protein_coding protein_coding MGP_C57BL6NJ_T0031282.1 MGP_C57BL6NJ_G0019131.1 mouse_genomes_project 11 80205125 80218324 + MGP_C57BL6NJ_P0031282 Tmigd1 protein_coding protein_coding MGP_C57BL6NJ_T0031283.1 MGP_C57BL6NJ_G0019131.1 mouse_genomes_project 11 80205142 80217835 + Tmigd1 protein_coding processed_transcript MGP_C57BL6NJ_T0034298.1 MGP_C57BL6NJ_G0019857.1 mouse_genomes_project 11 126413634 126428569 - MGP_C57BL6NJ_P0034298 BC100451 protein_coding protein_coding MGP_C57BL6NJ_T0034299.1 MGP_C57BL6NJ_G0019857.1 mouse_genomes_project 11 126413689 126415291 - MGP_C57BL6NJ_P0034299 BC100451 protein_coding protein_coding MGP_C57BL6NJ_T0033761.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122215724 122261582 + MGP_C57BL6NJ_P0033761 protein_coding protein_coding MGP_C57BL6NJ_T0033762.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122215728 122258067 + protein_coding processed_transcript MGP_C57BL6NJ_T0033763.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122217460 122261582 + MGP_C57BL6NJ_P0033763 protein_coding protein_coding MGP_C57BL6NJ_T0033764.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122223705 122258177 + MGP_C57BL6NJ_P0033764 protein_coding protein_coding MGP_C57BL6NJ_T0033765.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122228281 122257784 + protein_coding processed_transcript MGP_C57BL6NJ_T0033766.1 MGP_C57BL6NJ_G0019751.1 mouse_genomes_project 11 122256390 122260855 + protein_coding processed_transcript MGP_C57BL6NJ_T0006523.1 MGP_C57BL6NJ_G0005432.1 mouse_genomes_project 11 121614933 121637718 - Gm11690 lincRNA lincRNA MGP_C57BL6NJ_T0009961.1 MGP_C57BL6NJ_G0008046.1 mouse_genomes_project 11 123525617 123525680 + Mir5621 miRNA miRNA MGP_C57BL6NJ_T0101080.1 MGP_C57BL6NJ_G0039126.1 mouse_genomes_project 11 104784757 104784879 - Gm23451 snoRNA snoRNA MGP_C57BL6NJ_T0099802.1 MGP_C57BL6NJ_G0037848.1 mouse_genomes_project 11 112822419 112822563 - Gm25556 snRNA snRNA MGP_C57BL6NJ_T0006331.1 MGP_C57BL6NJ_G0005282.1 mouse_genomes_project 11 1293237 1301080 + Gm11959 lincRNA lincRNA MGP_C57BL6NJ_T0006522.1 MGP_C57BL6NJ_G0005431.1 mouse_genomes_project 11 121479695 121483626 + 1700025D23Rik lincRNA lincRNA MGP_C57BL6NJ_T0028508.1 MGP_C57BL6NJ_G0018434.1 mouse_genomes_project 11 6596843 6632973 + Abca13 protein_coding processed_transcript MGP_C57BL6NJ_T0028509.1 MGP_C57BL6NJ_G0018434.1 mouse_genomes_project 11 6596843 7152522 + MGP_C57BL6NJ_P0028509 Abca13 protein_coding protein_coding MGP_C57BL6NJ_T0028510.1 MGP_C57BL6NJ_G0018434.1 mouse_genomes_project 11 6598352 6675697 + MGP_C57BL6NJ_P0028510 Abca13 protein_coding protein_coding MGP_C57BL6NJ_T0102154.1 MGP_C57BL6NJ_G0040183.1 mouse_genomes_project 11 111062025 111063352 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102733.1 MGP_C57BL6NJ_G0040528.1 mouse_genomes_project 11 51631292 51632293 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030193.1 MGP_C57BL6NJ_G0018872.1 mouse_genomes_project 11 68442548 68795652 - MGP_C57BL6NJ_P0030193 Shisa6 protein_coding protein_coding MGP_C57BL6NJ_T0030194.1 MGP_C57BL6NJ_G0018872.1 mouse_genomes_project 11 68448295 68795821 - MGP_C57BL6NJ_P0030194 Shisa6 protein_coding protein_coding MGP_C57BL6NJ_T0030195.1 MGP_C57BL6NJ_G0018872.1 mouse_genomes_project 11 68621534 68772705 - Shisa6 protein_coding processed_transcript MGP_C57BL6NJ_T0009843.1 MGP_C57BL6NJ_G0007928.1 mouse_genomes_project 11 1961733 1961791 + Mir6918 miRNA miRNA MGP_C57BL6NJ_T0012065.1 MGP_C57BL6NJ_G0010147.1 mouse_genomes_project 11 76954174 76955111 + MGP_C57BL6NJ_P0012065 Olfr22-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0031558.1 MGP_C57BL6NJ_G0019193.1 mouse_genomes_project 11 83180722 83298905 + MGP_C57BL6NJ_P0031558 Rab11fip4 protein_coding protein_coding MGP_C57BL6NJ_T0031559.1 MGP_C57BL6NJ_G0019193.1 mouse_genomes_project 11 83255800 83282941 + MGP_C57BL6NJ_P0031559 Rab11fip4 protein_coding protein_coding MGP_C57BL6NJ_T0013021.1 MGP_C57BL6NJ_G0011066.1 mouse_genomes_project 11 97760353 97760934 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028450.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3782068 3838806 + MGP_C57BL6NJ_P0028450 Ccm2 protein_coding protein_coding MGP_C57BL6NJ_T0028451.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3782091 3831536 + MGP_C57BL6NJ_P0028451 Ccm2 protein_coding protein_coding MGP_C57BL6NJ_T0028452.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3796997 3838796 + MGP_C57BL6NJ_P0028452 Ccm2 protein_coding protein_coding MGP_C57BL6NJ_T0028453.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3797926 3835195 + MGP_C57BL6NJ_P0028453 Ccm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028454.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3797935 3799767 + Ccm2 protein_coding processed_transcript MGP_C57BL6NJ_T0028455.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3797948 3835132 + MGP_C57BL6NJ_P0028455 Ccm2 protein_coding protein_coding MGP_C57BL6NJ_T0028456.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3798044 3838804 + MGP_C57BL6NJ_P0028456 Ccm2 protein_coding protein_coding MGP_C57BL6NJ_T0028457.1 MGP_C57BL6NJ_G0018419.1 mouse_genomes_project 11 3835109 3836331 + Ccm2 protein_coding retained_intron MGP_C57BL6NJ_T0028740.1 MGP_C57BL6NJ_G0018487.1 mouse_genomes_project 11 22715932 22745466 - MGP_C57BL6NJ_P0028740 A830031A19Rik protein_coding protein_coding MGP_C57BL6NJ_T0099804.1 MGP_C57BL6NJ_G0037850.1 mouse_genomes_project 11 113498596 113498703 - Gm25889 snRNA snRNA MGP_C57BL6NJ_T0031227.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79340189 79473132 - Glod4 protein_coding retained_intron MGP_C57BL6NJ_T0031239.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79438075 79473120 - MGP_C57BL6NJ_P0031239 Glod4 protein_coding protein_coding MGP_C57BL6NJ_T0031243.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79449005 79473182 - MGP_C57BL6NJ_P0031243 Glod4 protein_coding protein_coding MGP_C57BL6NJ_T0031244.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79449102 79473108 - MGP_C57BL6NJ_P0031244 Glod4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031245.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79449289 79472916 - MGP_C57BL6NJ_P0031245 Glod4 protein_coding protein_coding MGP_C57BL6NJ_T0031246.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79462700 79473067 - MGP_C57BL6NJ_P0031246 Glod4 protein_coding protein_coding MGP_C57BL6NJ_T0031247.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79463703 79469029 - Glod4 protein_coding retained_intron MGP_C57BL6NJ_T0031248.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79463975 79473126 - MGP_C57BL6NJ_P0031248 Glod4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031249.1 MGP_C57BL6NJ_G0019119.1 mouse_genomes_project 11 79467169 79473095 - MGP_C57BL6NJ_P0031249 Glod4 protein_coding protein_coding MGP_C57BL6NJ_T0017670.1 MGP_C57BL6NJ_G0015573.1 mouse_genomes_project 11 70325482 70353376 + 9130017K11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017671.1 MGP_C57BL6NJ_G0015573.1 mouse_genomes_project 11 70326354 70327771 + 9130017K11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0009945.1 MGP_C57BL6NJ_G0008030.1 mouse_genomes_project 11 107468895 107468991 - Gm25593 miRNA miRNA MGP_C57BL6NJ_T0012836.1 MGP_C57BL6NJ_G0010881.1 mouse_genomes_project 11 25879939 25880158 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031752.1 MGP_C57BL6NJ_G0019250.1 mouse_genomes_project 11 87658933 87661211 + MGP_C57BL6NJ_P0031752 Wfdc17 protein_coding protein_coding MGP_C57BL6NJ_T0006344.1 MGP_C57BL6NJ_G0005294.1 mouse_genomes_project 11 19235753 19236192 - Gm12037 lincRNA lincRNA MGP_C57BL6NJ_T0030385.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71833897 71834901 - protein_coding retained_intron MGP_C57BL6NJ_T0030386.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71833897 71858190 - MGP_C57BL6NJ_P0030386 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030387.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71833950 71853882 - MGP_C57BL6NJ_P0030387 protein_coding protein_coding MGP_C57BL6NJ_T0030388.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71834111 71837565 - MGP_C57BL6NJ_P0030388 protein_coding protein_coding MGP_C57BL6NJ_T0030389.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71834281 71858221 - MGP_C57BL6NJ_P0030389 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030390.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71835927 71839388 - protein_coding retained_intron MGP_C57BL6NJ_T0030391.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71842828 71843857 - MGP_C57BL6NJ_P0030391 protein_coding protein_coding MGP_C57BL6NJ_T0030392.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71844457 71849552 - protein_coding retained_intron MGP_C57BL6NJ_T0030393.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71849190 71854487 - protein_coding retained_intron MGP_C57BL6NJ_T0030394.1 MGP_C57BL6NJ_G0018917.1 mouse_genomes_project 11 71849606 71853900 - protein_coding retained_intron MGP_C57BL6NJ_T0033890.1 MGP_C57BL6NJ_G0019782.1 mouse_genomes_project 11 123143938 123159076 + MGP_C57BL6NJ_P0033890 Armc7 protein_coding protein_coding MGP_C57BL6NJ_T0033891.1 MGP_C57BL6NJ_G0019782.1 mouse_genomes_project 11 123143969 123152439 + Armc7 protein_coding processed_transcript MGP_C57BL6NJ_T0033892.1 MGP_C57BL6NJ_G0019782.1 mouse_genomes_project 11 123144013 123153948 + Armc7 protein_coding processed_transcript MGP_C57BL6NJ_T0033893.1 MGP_C57BL6NJ_G0019782.1 mouse_genomes_project 11 123144225 123157671 + Armc7 protein_coding processed_transcript MGP_C57BL6NJ_T0029539.1 MGP_C57BL6NJ_G0018701.1 mouse_genomes_project 11 55084267 55132077 - MGP_C57BL6NJ_P0029539 Slc22a4 protein_coding protein_coding MGP_C57BL6NJ_T0029540.1 MGP_C57BL6NJ_G0018701.1 mouse_genomes_project 11 55093203 55108956 - Slc22a4 protein_coding processed_transcript MGP_C57BL6NJ_T0029541.1 MGP_C57BL6NJ_G0018701.1 mouse_genomes_project 11 55115370 55131939 - Slc22a4 protein_coding processed_transcript MGP_C57BL6NJ_T0034688.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129555399 129573756 + MGP_C57BL6NJ_P0034688 Hexdc protein_coding protein_coding MGP_C57BL6NJ_T0034689.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129555401 129573748 + MGP_C57BL6NJ_P0034689 Hexdc protein_coding protein_coding MGP_C57BL6NJ_T0034690.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129555741 129570991 + Hexdc protein_coding processed_transcript MGP_C57BL6NJ_T0034691.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129555767 129566391 + Hexdc protein_coding processed_transcript MGP_C57BL6NJ_T0034692.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129559024 129573748 + MGP_C57BL6NJ_P0034692 Hexdc protein_coding protein_coding MGP_C57BL6NJ_T0034693.1 MGP_C57BL6NJ_G0019933.1 mouse_genomes_project 11 129563371 129572127 + MGP_C57BL6NJ_P0034693 Hexdc protein_coding protein_coding MGP_C57BL6NJ_T0033755.1 MGP_C57BL6NJ_G0019749.1 mouse_genomes_project 11 122146830 122150638 + MGP_C57BL6NJ_P0033755 Rpl38 protein_coding protein_coding MGP_C57BL6NJ_T0033756.1 MGP_C57BL6NJ_G0019749.1 mouse_genomes_project 11 122146854 122150638 + MGP_C57BL6NJ_P0033756 Rpl38 protein_coding protein_coding MGP_C57BL6NJ_T0033757.1 MGP_C57BL6NJ_G0019749.1 mouse_genomes_project 11 122146915 122150638 + MGP_C57BL6NJ_P0033757 Rpl38 protein_coding protein_coding MGP_C57BL6NJ_T0033758.1 MGP_C57BL6NJ_G0019749.1 mouse_genomes_project 11 122146932 122150638 + MGP_C57BL6NJ_P0033758 Rpl38 protein_coding protein_coding MGP_C57BL6NJ_T0031638.1 MGP_C57BL6NJ_G0019212.1 mouse_genomes_project 11 85770494 85780778 - MGP_C57BL6NJ_P0031638 Gm17268 protein_coding protein_coding MGP_C57BL6NJ_T0101081.1 MGP_C57BL6NJ_G0039127.1 mouse_genomes_project 11 109137775 109137912 + Gm22683 snoRNA snoRNA MGP_C57BL6NJ_T0033460.1 MGP_C57BL6NJ_G0019682.1 mouse_genomes_project 11 112633870 112659115 + MGP_C57BL6NJ_P0033460 Kcnh6 protein_coding protein_coding MGP_C57BL6NJ_T0033461.1 MGP_C57BL6NJ_G0019682.1 mouse_genomes_project 11 112633919 112659557 + MGP_C57BL6NJ_P0033461 Kcnh6 protein_coding protein_coding MGP_C57BL6NJ_T0033462.1 MGP_C57BL6NJ_G0019682.1 mouse_genomes_project 11 112633949 112659072 + MGP_C57BL6NJ_P0033462 Kcnh6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033463.1 MGP_C57BL6NJ_G0019682.1 mouse_genomes_project 11 112639518 112643219 + Kcnh6 protein_coding processed_transcript MGP_C57BL6NJ_T0013091.1 MGP_C57BL6NJ_G0011136.1 mouse_genomes_project 11 129332932 129333225 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032733.1 MGP_C57BL6NJ_G0019511.1 mouse_genomes_project 11 105644948 105657829 - MGP_C57BL6NJ_P0032733 Gm11564 protein_coding protein_coding MGP_C57BL6NJ_T0030948.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75554845 75589734 + Ankfy1 protein_coding retained_intron MGP_C57BL6NJ_T0030949.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75554845 75645190 + MGP_C57BL6NJ_P0030949 Ankfy1 protein_coding protein_coding MGP_C57BL6NJ_T0030950.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75554845 75642950 + MGP_C57BL6NJ_P0030950 Ankfy1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030951.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75576962 75639317 + Ankfy1 protein_coding processed_transcript MGP_C57BL6NJ_T0030952.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75626003 75626978 + Ankfy1 protein_coding retained_intron MGP_C57BL6NJ_T0030953.1 MGP_C57BL6NJ_G0019035.1 mouse_genomes_project 11 75630547 75639482 + Ankfy1 protein_coding retained_intron MGP_C57BL6NJ_T0031020.1 MGP_C57BL6NJ_G0019056.1 mouse_genomes_project 11 76370802 76374243 - MGP_C57BL6NJ_P0031020 Olfr378 protein_coding protein_coding MGP_C57BL6NJ_T0028935.1 MGP_C57BL6NJ_G0018532.1 mouse_genomes_project 11 31763333 31768176 - MGP_C57BL6NJ_P0028935 Efcab9 protein_coding protein_coding MGP_C57BL6NJ_T0028936.1 MGP_C57BL6NJ_G0018532.1 mouse_genomes_project 11 31763922 31774109 - MGP_C57BL6NJ_P0028936 Efcab9 protein_coding protein_coding MGP_C57BL6NJ_T0028615.1 MGP_C57BL6NJ_G0018459.1 mouse_genomes_project 11 18630163 18663868 - MGP_C57BL6NJ_P0028615 Slc1a4 protein_coding protein_coding MGP_C57BL6NJ_T0032586.1 MGP_C57BL6NJ_G0019454.1 mouse_genomes_project 11 104071314 104072598 - MGP_C57BL6NJ_P0032586 Mien1 protein_coding protein_coding MGP_C57BL6NJ_T0031473.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81816705 81822383 + MGP_C57BL6NJ_P0031473 Unc119 protein_coding protein_coding MGP_C57BL6NJ_T0031474.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81816721 81821068 + Unc119 protein_coding retained_intron MGP_C57BL6NJ_T0031475.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81816729 81822383 + MGP_C57BL6NJ_P0031475 Unc119 protein_coding protein_coding MGP_C57BL6NJ_T0031476.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81816768 81822115 + Unc119 protein_coding retained_intron MGP_C57BL6NJ_T0031477.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81819884 81822198 + MGP_C57BL6NJ_P0031477 Unc119 protein_coding protein_coding MGP_C57BL6NJ_T0031478.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81820129 81821338 + Unc119 protein_coding retained_intron MGP_C57BL6NJ_T0031479.1 MGP_C57BL6NJ_G0019168.1 mouse_genomes_project 11 81821153 81822217 + Unc119 protein_coding retained_intron MGP_C57BL6NJ_T0030699.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73104965 73108327 + Arrb2 protein_coding retained_intron MGP_C57BL6NJ_T0030700.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73104967 73113005 + MGP_C57BL6NJ_P0030700 Arrb2 protein_coding protein_coding MGP_C57BL6NJ_T0030701.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73104967 73113005 + MGP_C57BL6NJ_P0030701 Arrb2 protein_coding protein_coding MGP_C57BL6NJ_T0030702.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73104975 73113159 + MGP_C57BL6NJ_P0030702 Arrb2 protein_coding protein_coding MGP_C57BL6NJ_T0030703.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73105007 73109936 + MGP_C57BL6NJ_P0030703 Arrb2 protein_coding protein_coding MGP_C57BL6NJ_T0030704.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73105012 73111078 + MGP_C57BL6NJ_P0030704 Arrb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030705.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73105061 73113014 + MGP_C57BL6NJ_P0030705 Arrb2 protein_coding protein_coding MGP_C57BL6NJ_T0030706.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73109029 73112564 + Arrb2 protein_coding retained_intron MGP_C57BL6NJ_T0030707.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73109233 73111053 + Arrb2 protein_coding retained_intron MGP_C57BL6NJ_T0030708.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73109622 73111884 + Arrb2 protein_coding retained_intron MGP_C57BL6NJ_T0030709.1 MGP_C57BL6NJ_G0018985.1 mouse_genomes_project 11 73110912 73112559 + Arrb2 protein_coding retained_intron MGP_C57BL6NJ_T0017665.1 MGP_C57BL6NJ_G0015569.1 mouse_genomes_project 11 61465394 61472250 - 1700007J10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017666.1 MGP_C57BL6NJ_G0015569.1 mouse_genomes_project 11 61465394 61479632 - 1700007J10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012802.1 MGP_C57BL6NJ_G0010847.1 mouse_genomes_project 11 17559353 17559497 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099778.1 MGP_C57BL6NJ_G0037824.1 mouse_genomes_project 11 89283550 89283657 + Gm23506 snRNA snRNA MGP_C57BL6NJ_T0032603.1 MGP_C57BL6NJ_G0019458.1 mouse_genomes_project 11 104229174 104238606 - MGP_C57BL6NJ_P0032603 Ormdl3 protein_coding protein_coding MGP_C57BL6NJ_T0006381.1 MGP_C57BL6NJ_G0005325.1 mouse_genomes_project 11 37223533 37237715 + Gm12128 lincRNA lincRNA MGP_C57BL6NJ_T0012991.1 MGP_C57BL6NJ_G0011036.1 mouse_genomes_project 11 83038015 83038522 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013079.1 MGP_C57BL6NJ_G0011124.1 mouse_genomes_project 11 122463794 122464195 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013060.1 MGP_C57BL6NJ_G0011105.1 mouse_genomes_project 11 112392567 112393834 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028153.1 MGP_C57BL6NJ_G0018351.1 mouse_genomes_project 11 338072 379563 - MGP_C57BL6NJ_P0028153 Rnf185 protein_coding protein_coding MGP_C57BL6NJ_T0028154.1 MGP_C57BL6NJ_G0018351.1 mouse_genomes_project 11 338072 379563 - MGP_C57BL6NJ_P0028154 Rnf185 protein_coding protein_coding MGP_C57BL6NJ_T0028155.1 MGP_C57BL6NJ_G0018351.1 mouse_genomes_project 11 339966 379534 - Rnf185 protein_coding processed_transcript MGP_C57BL6NJ_T0032740.1 MGP_C57BL6NJ_G0019518.1 mouse_genomes_project 11 105774808 105815116 + MGP_C57BL6NJ_P0032740 protein_coding protein_coding MGP_C57BL6NJ_T0003290.1 MGP_C57BL6NJ_G0003041.1 mouse_genomes_project 11 33049852 33055968 + Gm12120 antisense antisense MGP_C57BL6NJ_T0031550.1 MGP_C57BL6NJ_G0019191.1 mouse_genomes_project 11 83100939 83109574 - MGP_C57BL6NJ_P0031550 Gm21975 protein_coding protein_coding MGP_C57BL6NJ_T0029561.1 MGP_C57BL6NJ_G0018704.1 mouse_genomes_project 11 55367745 55370142 - MGP_C57BL6NJ_P0029561 Csf2 protein_coding protein_coding MGP_C57BL6NJ_T0029740.1 MGP_C57BL6NJ_G0018767.1 mouse_genomes_project 11 60447198 60461947 + MGP_C57BL6NJ_P0029740 Gm12258 protein_coding protein_coding MGP_C57BL6NJ_T0029741.1 MGP_C57BL6NJ_G0018767.1 mouse_genomes_project 11 60447201 60451402 + Gm12258 protein_coding processed_transcript MGP_C57BL6NJ_T0017620.1 MGP_C57BL6NJ_G0015545.1 mouse_genomes_project 11 3957233 3961329 - Gm11981 processed_transcript processed_transcript MGP_C57BL6NJ_T0032223.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99812918 99826583 - MGP_C57BL6NJ_P0032223 Xylt2 protein_coding protein_coding MGP_C57BL6NJ_T0032224.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99813654 99826583 - MGP_C57BL6NJ_P0032224 Xylt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032225.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99815294 99817260 - MGP_C57BL6NJ_P0032225 Xylt2 protein_coding protein_coding MGP_C57BL6NJ_T0032226.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99815938 99816870 - Xylt2 protein_coding retained_intron MGP_C57BL6NJ_T0032227.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99817594 99826475 - MGP_C57BL6NJ_P0032227 Xylt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032228.1 MGP_C57BL6NJ_G0019359.1 mouse_genomes_project 11 99825030 99826481 - Xylt2 protein_coding processed_transcript MGP_C57BL6NJ_T0032416.1 MGP_C57BL6NJ_G0019412.1 mouse_genomes_project 11 102473704 102486636 + MGP_C57BL6NJ_P0032416 Sp6 protein_coding protein_coding MGP_C57BL6NJ_T0032417.1 MGP_C57BL6NJ_G0019412.1 mouse_genomes_project 11 102480752 102486633 + MGP_C57BL6NJ_P0032417 Sp6 protein_coding protein_coding MGP_C57BL6NJ_T0028929.1 MGP_C57BL6NJ_G0018528.1 mouse_genomes_project 11 31516623 31523065 + MGP_C57BL6NJ_P0028929 Hbq1a protein_coding protein_coding MGP_C57BL6NJ_T0006488.1 MGP_C57BL6NJ_G0005407.1 mouse_genomes_project 11 101167121 101168134 - Gm11527 lincRNA lincRNA MGP_C57BL6NJ_T0012820.1 MGP_C57BL6NJ_G0010865.1 mouse_genomes_project 11 19957508 19958081 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012915.1 MGP_C57BL6NJ_G0010960.1 mouse_genomes_project 11 56101935 56102389 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006376.1 MGP_C57BL6NJ_G0005320.1 mouse_genomes_project 11 32175760 32198434 - Gm12111 lincRNA lincRNA MGP_C57BL6NJ_T0028311.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2143728 2156990 - Gas2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0028312.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2145118 2156996 - MGP_C57BL6NJ_P0028312 Gas2l1 protein_coding protein_coding MGP_C57BL6NJ_T0028315.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2152026 2157023 - MGP_C57BL6NJ_P0028315 Gas2l1 protein_coding protein_coding MGP_C57BL6NJ_T0028316.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2152035 2156973 - MGP_C57BL6NJ_P0028316 Gas2l1 protein_coding protein_coding MGP_C57BL6NJ_T0028317.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2152124 2156547 - Gas2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0028318.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2155568 2156974 - MGP_C57BL6NJ_P0028318 Gas2l1 protein_coding protein_coding MGP_C57BL6NJ_T0028319.1 MGP_C57BL6NJ_G0018387.1 mouse_genomes_project 11 2156112 2156990 - Gas2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0033050.1 MGP_C57BL6NJ_G0019600.1 mouse_genomes_project 11 107791720 107798204 + Rdm1 protein_coding processed_transcript MGP_C57BL6NJ_T0033051.1 MGP_C57BL6NJ_G0019600.1 mouse_genomes_project 11 107792467 107803399 + MGP_C57BL6NJ_P0033051 Rdm1 protein_coding protein_coding MGP_C57BL6NJ_T0033052.1 MGP_C57BL6NJ_G0019600.1 mouse_genomes_project 11 107792497 107801136 + Rdm1 protein_coding processed_transcript MGP_C57BL6NJ_T0033053.1 MGP_C57BL6NJ_G0019600.1 mouse_genomes_project 11 107792914 107803371 + MGP_C57BL6NJ_P0033053 Rdm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033054.1 MGP_C57BL6NJ_G0019600.1 mouse_genomes_project 11 107801040 107803259 + Rdm1 protein_coding retained_intron MGP_C57BL6NJ_T0030656.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72831358 72835020 + MGP_C57BL6NJ_P0030656 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030657.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832516 72835019 + MGP_C57BL6NJ_P0030657 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030658.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832605 72833461 + Slc16a11 protein_coding retained_intron MGP_C57BL6NJ_T0030659.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832686 72835020 + MGP_C57BL6NJ_P0030659 Slc16a11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030660.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832721 72835021 + MGP_C57BL6NJ_P0030660 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030661.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832725 72835024 + MGP_C57BL6NJ_P0030661 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030662.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832725 72834139 + MGP_C57BL6NJ_P0030662 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030663.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832727 72833594 + MGP_C57BL6NJ_P0030663 Slc16a11 protein_coding protein_coding MGP_C57BL6NJ_T0030664.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72832728 72834282 + Slc16a11 protein_coding processed_transcript MGP_C57BL6NJ_T0030665.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72833168 72834087 + Slc16a11 protein_coding retained_intron MGP_C57BL6NJ_T0030666.1 MGP_C57BL6NJ_G0018975.1 mouse_genomes_project 11 72833424 72835020 + Slc16a11 protein_coding retained_intron MGP_C57BL6NJ_T0006472.1 MGP_C57BL6NJ_G0005396.1 mouse_genomes_project 11 93198300 93202256 + C030037D09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006473.1 MGP_C57BL6NJ_G0005396.1 mouse_genomes_project 11 93198459 93210322 + C030037D09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006474.1 MGP_C57BL6NJ_G0005396.1 mouse_genomes_project 11 93200144 93203829 + C030037D09Rik lincRNA lincRNA MGP_C57BL6NJ_T0032744.1 MGP_C57BL6NJ_G0019522.1 mouse_genomes_project 11 105860568 105861597 - MGP_C57BL6NJ_P0032744 Krtap29-1 protein_coding protein_coding MGP_C57BL6NJ_T0028925.1 MGP_C57BL6NJ_G0018526.1 mouse_genomes_project 11 31495030 31495985 + MGP_C57BL6NJ_P0028925 Hba-a1 protein_coding protein_coding MGP_C57BL6NJ_T0028926.1 MGP_C57BL6NJ_G0018526.1 mouse_genomes_project 11 31495330 31495958 + Hba-a1 protein_coding retained_intron MGP_C57BL6NJ_T0031067.1 MGP_C57BL6NJ_G0019084.1 mouse_genomes_project 11 77411947 77412942 + MGP_C57BL6NJ_P0031067 Olfr412 protein_coding protein_coding MGP_C57BL6NJ_T0101087.1 MGP_C57BL6NJ_G0039133.1 mouse_genomes_project 11 124516111 124516187 + Snord1c snoRNA snoRNA MGP_C57BL6NJ_T0030697.1 MGP_C57BL6NJ_G0018984.1 mouse_genomes_project 11 73059528 73083460 - MGP_C57BL6NJ_P0030697 Pelp1 protein_coding protein_coding MGP_C57BL6NJ_T0030698.1 MGP_C57BL6NJ_G0018984.1 mouse_genomes_project 11 73076062 73083463 - MGP_C57BL6NJ_P0030698 Pelp1 protein_coding protein_coding MGP_C57BL6NJ_T0033507.1 MGP_C57BL6NJ_G0019696.1 mouse_genomes_project 11 112954880 112958302 - MGP_C57BL6NJ_P0033507 Cd79b protein_coding protein_coding MGP_C57BL6NJ_T0033508.1 MGP_C57BL6NJ_G0019696.1 mouse_genomes_project 11 112954883 112958069 - MGP_C57BL6NJ_P0033508 Cd79b protein_coding protein_coding MGP_C57BL6NJ_T0030065.1 MGP_C57BL6NJ_G0018844.1 mouse_genomes_project 11 64268126 64269242 + Ttc19 protein_coding processed_transcript MGP_C57BL6NJ_T0030066.1 MGP_C57BL6NJ_G0018844.1 mouse_genomes_project 11 64268135 64301328 + MGP_C57BL6NJ_P0030066 Ttc19 protein_coding protein_coding MGP_C57BL6NJ_T0030067.1 MGP_C57BL6NJ_G0018844.1 mouse_genomes_project 11 64268137 64302508 + MGP_C57BL6NJ_P0030067 Ttc19 protein_coding protein_coding MGP_C57BL6NJ_T0030068.1 MGP_C57BL6NJ_G0018844.1 mouse_genomes_project 11 64270327 64314943 + MGP_C57BL6NJ_P0030068 Ttc19 protein_coding protein_coding MGP_C57BL6NJ_T0030069.1 MGP_C57BL6NJ_G0018844.1 mouse_genomes_project 11 64295570 64315271 + Ttc19 protein_coding processed_transcript MGP_C57BL6NJ_T0030196.1 MGP_C57BL6NJ_G0018873.1 mouse_genomes_project 11 69207067 69225621 + MGP_C57BL6NJ_P0030196 Pirt protein_coding protein_coding MGP_C57BL6NJ_T0029384.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368432 52391239 + MGP_C57BL6NJ_P0029384 Phykpl protein_coding protein_coding MGP_C57BL6NJ_T0029385.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368432 52390004 + MGP_C57BL6NJ_P0029385 Phykpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029386.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368464 52388078 + MGP_C57BL6NJ_P0029386 Phykpl protein_coding protein_coding MGP_C57BL6NJ_T0029387.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368478 52383760 + Phykpl protein_coding retained_intron MGP_C57BL6NJ_T0029388.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368482 52370993 + Phykpl protein_coding retained_intron MGP_C57BL6NJ_T0029389.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52368486 52376976 + Phykpl protein_coding retained_intron MGP_C57BL6NJ_T0029390.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52375116 52377551 + Phykpl protein_coding retained_intron MGP_C57BL6NJ_T0029391.1 MGP_C57BL6NJ_G0018658.1 mouse_genomes_project 11 52386016 52387817 + Phykpl protein_coding retained_intron MGP_C57BL6NJ_T0034052.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123908369 123915413 - MGP_C57BL6NJ_P0034052 Mrpl38 protein_coding protein_coding MGP_C57BL6NJ_T0034053.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123908373 123915320 - Mrpl38 protein_coding retained_intron MGP_C57BL6NJ_T0034054.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123909337 123915334 - Mrpl38 protein_coding retained_intron MGP_C57BL6NJ_T0034055.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123910606 123911001 - Mrpl38 protein_coding retained_intron MGP_C57BL6NJ_T0034056.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123910800 123911172 - Mrpl38 protein_coding retained_intron MGP_C57BL6NJ_T0034057.1 MGP_C57BL6NJ_G0019809.1 mouse_genomes_project 11 123914326 123915410 - Mrpl38 protein_coding retained_intron MGP_C57BL6NJ_T0012756.1 MGP_C57BL6NJ_G0010801.1 mouse_genomes_project 11 1245921 1246433 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011564.1 MGP_C57BL6NJ_G0009649.1 mouse_genomes_project 11 75673305 75673497 - Gm22075 misc_RNA misc_RNA MGP_C57BL6NJ_T0028251.1 MGP_C57BL6NJ_G0018374.1 mouse_genomes_project 11 1251587 1254832 + Osm protein_coding processed_transcript MGP_C57BL6NJ_T0028252.1 MGP_C57BL6NJ_G0018374.1 mouse_genomes_project 11 1251587 1256194 + MGP_C57BL6NJ_P0028252 Osm protein_coding protein_coding MGP_C57BL6NJ_T0017730.1 MGP_C57BL6NJ_G0015610.1 mouse_genomes_project 11 114647119 114649208 + Gm11650 processed_transcript processed_transcript MGP_C57BL6NJ_T0033010.1 MGP_C57BL6NJ_G0019592.1 mouse_genomes_project 11 107560593 107573671 + MGP_C57BL6NJ_P0033010 Rundc1 protein_coding protein_coding MGP_C57BL6NJ_T0032947.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317114 107319337 + MGP_C57BL6NJ_P0032947 Ramp2 protein_coding protein_coding MGP_C57BL6NJ_T0032948.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317398 107318771 + Ramp2 protein_coding retained_intron MGP_C57BL6NJ_T0032949.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317477 107338132 + MGP_C57BL6NJ_P0032949 Ramp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032950.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317515 107319337 + MGP_C57BL6NJ_P0032950 Ramp2 protein_coding protein_coding MGP_C57BL6NJ_T0032951.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317518 107319337 + MGP_C57BL6NJ_P0032951 Ramp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032952.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107317653 107318723 + MGP_C57BL6NJ_P0032952 Ramp2 protein_coding protein_coding MGP_C57BL6NJ_T0032953.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107318019 107319337 + Ramp2 protein_coding retained_intron MGP_C57BL6NJ_T0032954.1 MGP_C57BL6NJ_G0019579.1 mouse_genomes_project 11 107318179 107319151 + MGP_C57BL6NJ_P0032954 Ramp2 protein_coding protein_coding MGP_C57BL6NJ_T0034536.1 MGP_C57BL6NJ_G0019904.1 mouse_genomes_project 11 128860497 128871771 + MGP_C57BL6NJ_P0034536 Anapc11 protein_coding protein_coding MGP_C57BL6NJ_T0034537.1 MGP_C57BL6NJ_G0019904.1 mouse_genomes_project 11 128860516 128862765 + Anapc11 protein_coding retained_intron MGP_C57BL6NJ_T0034538.1 MGP_C57BL6NJ_G0019904.1 mouse_genomes_project 11 128860608 128869349 + MGP_C57BL6NJ_P0034538 Anapc11 protein_coding protein_coding MGP_C57BL6NJ_T0034539.1 MGP_C57BL6NJ_G0019904.1 mouse_genomes_project 11 128867516 128869065 + Anapc11 protein_coding processed_transcript MGP_C57BL6NJ_T0102753.1 MGP_C57BL6NJ_G0040548.1 mouse_genomes_project 11 87629578 87630406 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003391.1 MGP_C57BL6NJ_G0003128.1 mouse_genomes_project 11 85309581 85315683 + Gm11418 antisense antisense MGP_C57BL6NJ_T0006513.1 MGP_C57BL6NJ_G0005426.1 mouse_genomes_project 11 119316928 119341683 + Gm11680 lincRNA lincRNA MGP_C57BL6NJ_T0031762.1 MGP_C57BL6NJ_G0019254.1 mouse_genomes_project 11 87818179 87879454 + MGP_C57BL6NJ_P0031762 Hnf1b protein_coding protein_coding MGP_C57BL6NJ_T0031763.1 MGP_C57BL6NJ_G0019254.1 mouse_genomes_project 11 87818354 87878569 + MGP_C57BL6NJ_P0031763 Hnf1b protein_coding protein_coding MGP_C57BL6NJ_T0031764.1 MGP_C57BL6NJ_G0019254.1 mouse_genomes_project 11 87819547 87835206 + MGP_C57BL6NJ_P0031764 Hnf1b protein_coding protein_coding MGP_C57BL6NJ_T0034579.1 MGP_C57BL6NJ_G0019911.1 mouse_genomes_project 11 128921389 128928232 - MGP_C57BL6NJ_P0034579 Notum protein_coding protein_coding MGP_C57BL6NJ_T0034580.1 MGP_C57BL6NJ_G0019911.1 mouse_genomes_project 11 128921389 128928455 - MGP_C57BL6NJ_P0034580 Notum protein_coding protein_coding MGP_C57BL6NJ_T0034581.1 MGP_C57BL6NJ_G0019911.1 mouse_genomes_project 11 128921446 128925670 - Notum protein_coding retained_intron MGP_C57BL6NJ_T0034582.1 MGP_C57BL6NJ_G0019911.1 mouse_genomes_project 11 128925188 128928801 - MGP_C57BL6NJ_P0034582 Notum protein_coding protein_coding MGP_C57BL6NJ_T0031055.1 MGP_C57BL6NJ_G0019077.1 mouse_genomes_project 11 77154691 77155703 + MGP_C57BL6NJ_P0031055 Olfr402 protein_coding protein_coding MGP_C57BL6NJ_T0013024.1 MGP_C57BL6NJ_G0011069.1 mouse_genomes_project 11 100429912 100430344 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098959.1 MGP_C57BL6NJ_G0037023.1 mouse_genomes_project 11 25915856 25915938 + n-R5s68 rRNA rRNA MGP_C57BL6NJ_T0006366.1 MGP_C57BL6NJ_G0005312.1 mouse_genomes_project 11 27645166 27656933 + 2810471M01Rik lincRNA lincRNA MGP_C57BL6NJ_T0032248.1 MGP_C57BL6NJ_G0019367.1 mouse_genomes_project 11 100258163 100274156 + MGP_C57BL6NJ_P0032248 Samd14 protein_coding protein_coding MGP_C57BL6NJ_T0032249.1 MGP_C57BL6NJ_G0019367.1 mouse_genomes_project 11 100258166 100269709 + Samd14 protein_coding processed_transcript MGP_C57BL6NJ_T0032250.1 MGP_C57BL6NJ_G0019367.1 mouse_genomes_project 11 100258515 100268185 + MGP_C57BL6NJ_P0032250 Samd14 protein_coding protein_coding MGP_C57BL6NJ_T0031340.1 MGP_C57BL6NJ_G0019144.1 mouse_genomes_project 11 81093267 81122871 + MGP_C57BL6NJ_P0031340 Nufip2 protein_coding protein_coding MGP_C57BL6NJ_T0031341.1 MGP_C57BL6NJ_G0019144.1 mouse_genomes_project 11 81093284 81157379 + MGP_C57BL6NJ_P0031341 Nufip2 protein_coding protein_coding MGP_C57BL6NJ_T0031342.1 MGP_C57BL6NJ_G0019144.1 mouse_genomes_project 11 81094571 81100425 + Nufip2 protein_coding processed_transcript MGP_C57BL6NJ_T0031343.1 MGP_C57BL6NJ_G0019144.1 mouse_genomes_project 11 81094713 81100223 + Nufip2 protein_coding processed_transcript MGP_C57BL6NJ_T0013016.1 MGP_C57BL6NJ_G0011061.1 mouse_genomes_project 11 95252393 95252933 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029081.1 MGP_C57BL6NJ_G0018573.1 mouse_genomes_project 11 43799026 43817361 - MGP_C57BL6NJ_P0029081 Ttc1 protein_coding protein_coding MGP_C57BL6NJ_T0029082.1 MGP_C57BL6NJ_G0018573.1 mouse_genomes_project 11 43799523 43817335 - MGP_C57BL6NJ_P0029082 Ttc1 protein_coding protein_coding MGP_C57BL6NJ_T0029083.1 MGP_C57BL6NJ_G0018573.1 mouse_genomes_project 11 43814535 43817345 - Ttc1 protein_coding processed_transcript MGP_C57BL6NJ_T0031344.1 MGP_C57BL6NJ_G0019145.1 mouse_genomes_project 11 81130874 81135408 - Cryba1 protein_coding retained_intron MGP_C57BL6NJ_T0031345.1 MGP_C57BL6NJ_G0019145.1 mouse_genomes_project 11 81130886 81138857 - MGP_C57BL6NJ_P0031345 Cryba1 protein_coding protein_coding MGP_C57BL6NJ_T0029151.1 MGP_C57BL6NJ_G0018594.1 mouse_genomes_project 11 46963526 46985649 - MGP_C57BL6NJ_P0029151 Timd2 protein_coding protein_coding MGP_C57BL6NJ_T0029152.1 MGP_C57BL6NJ_G0018594.1 mouse_genomes_project 11 46964575 47013444 - MGP_C57BL6NJ_P0029152 Timd2 protein_coding protein_coding MGP_C57BL6NJ_T0029153.1 MGP_C57BL6NJ_G0018594.1 mouse_genomes_project 11 46964575 46995183 - MGP_C57BL6NJ_P0029153 Timd2 protein_coding protein_coding MGP_C57BL6NJ_T0029154.1 MGP_C57BL6NJ_G0018594.1 mouse_genomes_project 11 46965464 46984821 - MGP_C57BL6NJ_P0029154 Timd2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029155.1 MGP_C57BL6NJ_G0018594.1 mouse_genomes_project 11 46982317 47013446 - MGP_C57BL6NJ_P0029155 Timd2 protein_coding protein_coding MGP_C57BL6NJ_T0030222.1 MGP_C57BL6NJ_G0018881.1 mouse_genomes_project 11 69625247 69659746 + MGP_C57BL6NJ_P0030222 Myh8 protein_coding protein_coding MGP_C57BL6NJ_T0030223.1 MGP_C57BL6NJ_G0018881.1 mouse_genomes_project 11 69625541 69644507 + Myh8 protein_coding retained_intron MGP_C57BL6NJ_T0030224.1 MGP_C57BL6NJ_G0018881.1 mouse_genomes_project 11 69625541 69630272 + MGP_C57BL6NJ_P0030224 Myh8 protein_coding protein_coding MGP_C57BL6NJ_T0030225.1 MGP_C57BL6NJ_G0018881.1 mouse_genomes_project 11 69628114 69641439 + Myh8 protein_coding retained_intron MGP_C57BL6NJ_T0003492.1 MGP_C57BL6NJ_G0003207.1 mouse_genomes_project 11 123660963 123663785 + antisense antisense MGP_C57BL6NJ_T0006541.1 MGP_C57BL6NJ_G0005446.1 mouse_genomes_project 11 127244021 127260623 - Gm11755 lincRNA lincRNA MGP_C57BL6NJ_T0032097.1 MGP_C57BL6NJ_G0019333.1 mouse_genomes_project 11 95385836 95392624 + MGP_C57BL6NJ_P0032097 Cox11 protein_coding protein_coding MGP_C57BL6NJ_T0032098.1 MGP_C57BL6NJ_G0019333.1 mouse_genomes_project 11 95386165 95392245 + MGP_C57BL6NJ_P0032098 Cox11 protein_coding protein_coding MGP_C57BL6NJ_T0009900.1 MGP_C57BL6NJ_G0007985.1 mouse_genomes_project 11 73482885 73482978 - Gm22760 miRNA miRNA MGP_C57BL6NJ_T0031749.1 MGP_C57BL6NJ_G0019247.1 mouse_genomes_project 11 87595750 87596326 - MGP_C57BL6NJ_P0031749 Rpl9-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0032930.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107211437 107219718 - MGP_C57BL6NJ_P0032930 Plekhh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032931.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107211437 107220114 - MGP_C57BL6NJ_P0032931 Plekhh3 protein_coding protein_coding MGP_C57BL6NJ_T0032932.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107211437 107214379 - MGP_C57BL6NJ_P0032932 Plekhh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032933.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107211440 107220080 - MGP_C57BL6NJ_P0032933 Plekhh3 protein_coding protein_coding MGP_C57BL6NJ_T0032934.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107212925 107214083 - Plekhh3 protein_coding processed_transcript MGP_C57BL6NJ_T0032935.1 MGP_C57BL6NJ_G0019575.1 mouse_genomes_project 11 107216236 107219117 - MGP_C57BL6NJ_P0032935 Plekhh3 protein_coding protein_coding MGP_C57BL6NJ_T0006391.1 MGP_C57BL6NJ_G0005335.1 mouse_genomes_project 11 45333088 45390424 + Gm12160 lincRNA lincRNA MGP_C57BL6NJ_T0030147.1 MGP_C57BL6NJ_G0018858.1 mouse_genomes_project 11 65011390 65054577 + MGP_C57BL6NJ_P0030147 Cdrt4 protein_coding protein_coding MGP_C57BL6NJ_T0032188.1 MGP_C57BL6NJ_G0019350.1 mouse_genomes_project 11 99581925 99588168 - Spata20 protein_coding processed_transcript MGP_C57BL6NJ_T0032189.1 MGP_C57BL6NJ_G0019350.1 mouse_genomes_project 11 99581925 99588415 - MGP_C57BL6NJ_P0032189 Spata20 protein_coding protein_coding MGP_C57BL6NJ_T0032190.1 MGP_C57BL6NJ_G0019350.1 mouse_genomes_project 11 99586105 99587479 - Spata20 protein_coding processed_transcript MGP_C57BL6NJ_T0032191.1 MGP_C57BL6NJ_G0019350.1 mouse_genomes_project 11 99586419 99588166 - Spata20 protein_coding processed_transcript MGP_C57BL6NJ_T0032192.1 MGP_C57BL6NJ_G0019350.1 mouse_genomes_project 11 99587674 99589246 - Spata20 protein_coding processed_transcript MGP_C57BL6NJ_T0101089.1 MGP_C57BL6NJ_G0039135.1 mouse_genomes_project 11 124518203 124518277 + Snord1a snoRNA snoRNA MGP_C57BL6NJ_T0033641.1 MGP_C57BL6NJ_G0019721.1 mouse_genomes_project 11 116082876 116087955 - MGP_C57BL6NJ_P0033641 E030025P04Rik protein_coding protein_coding MGP_C57BL6NJ_T0006432.1 MGP_C57BL6NJ_G0005369.1 mouse_genomes_project 11 74291260 74359272 + 9230020A06Rik lincRNA lincRNA MGP_C57BL6NJ_T0006433.1 MGP_C57BL6NJ_G0005369.1 mouse_genomes_project 11 74330991 74358565 + 9230020A06Rik lincRNA lincRNA MGP_C57BL6NJ_T0017636.1 MGP_C57BL6NJ_G0015553.1 mouse_genomes_project 11 22115690 22116393 + 1700030C12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017637.1 MGP_C57BL6NJ_G0015553.1 mouse_genomes_project 11 22115694 22117408 + 1700030C12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017638.1 MGP_C57BL6NJ_G0015553.1 mouse_genomes_project 11 22115720 22116939 + 1700030C12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017639.1 MGP_C57BL6NJ_G0015553.1 mouse_genomes_project 11 22116597 22117391 + 1700030C12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012760.1 MGP_C57BL6NJ_G0010805.1 mouse_genomes_project 11 2819412 2819689 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032472.1 MGP_C57BL6NJ_G0019426.1 mouse_genomes_project 11 103039082 103111193 - MGP_C57BL6NJ_P0032472 Srcin1 protein_coding protein_coding MGP_C57BL6NJ_T0032473.1 MGP_C57BL6NJ_G0019426.1 mouse_genomes_project 11 103044910 103110031 - MGP_C57BL6NJ_P0032473 Srcin1 protein_coding protein_coding MGP_C57BL6NJ_T0032474.1 MGP_C57BL6NJ_G0019426.1 mouse_genomes_project 11 103049627 103109922 - MGP_C57BL6NJ_P0032474 Srcin1 protein_coding protein_coding MGP_C57BL6NJ_T0032475.1 MGP_C57BL6NJ_G0019426.1 mouse_genomes_project 11 103067948 103109907 - MGP_C57BL6NJ_P0032475 Srcin1 protein_coding protein_coding MGP_C57BL6NJ_T0032476.1 MGP_C57BL6NJ_G0019426.1 mouse_genomes_project 11 103086920 103111204 - Srcin1 protein_coding processed_transcript MGP_C57BL6NJ_T0099756.1 MGP_C57BL6NJ_G0037802.1 mouse_genomes_project 11 62571339 62571436 + Gm23341 snRNA snRNA MGP_C57BL6NJ_T0013075.1 MGP_C57BL6NJ_G0011120.1 mouse_genomes_project 11 121122496 121123001 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029071.1 MGP_C57BL6NJ_G0018569.1 mouse_genomes_project 11 43590594 43652098 + MGP_C57BL6NJ_P0029071 Ccnjl protein_coding protein_coding MGP_C57BL6NJ_T0029072.1 MGP_C57BL6NJ_G0018569.1 mouse_genomes_project 11 43591056 43618607 + Ccnjl protein_coding processed_transcript MGP_C57BL6NJ_T0009913.1 MGP_C57BL6NJ_G0007998.1 mouse_genomes_project 11 81510791 81510863 + Mir451a miRNA miRNA MGP_C57BL6NJ_T0034395.1 MGP_C57BL6NJ_G0019876.1 mouse_genomes_project 11 127720612 127731899 - MGP_C57BL6NJ_P0034395 Nptx1 protein_coding protein_coding MGP_C57BL6NJ_T0009940.1 MGP_C57BL6NJ_G0008025.1 mouse_genomes_project 11 103872203 103872260 + Mir5119 miRNA miRNA MGP_C57BL6NJ_T0101024.1 MGP_C57BL6NJ_G0039070.1 mouse_genomes_project 11 24452617 24452747 + Gm23514 snoRNA snoRNA MGP_C57BL6NJ_T0102757.1 MGP_C57BL6NJ_G0040552.1 mouse_genomes_project 11 99729546 99731185 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099791.1 MGP_C57BL6NJ_G0037837.1 mouse_genomes_project 11 101440976 101441160 - Gm22423 snRNA snRNA MGP_C57BL6NJ_T0012766.1 MGP_C57BL6NJ_G0010811.1 mouse_genomes_project 11 3795868 3796318 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009846.1 MGP_C57BL6NJ_G0007931.1 mouse_genomes_project 11 3695430 3695483 - Gm22123 miRNA miRNA MGP_C57BL6NJ_T0030674.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72853838 72856447 - MGP_C57BL6NJ_P0030674 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030676.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72853846 72856496 - MGP_C57BL6NJ_P0030676 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030677.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72853846 72856547 - MGP_C57BL6NJ_P0030677 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030678.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72853846 72856557 - MGP_C57BL6NJ_P0030678 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030679.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72853846 72854837 - MGP_C57BL6NJ_P0030679 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030681.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72854002 72856321 - MGP_C57BL6NJ_P0030681 0610010K14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030682.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72854011 72856132 - 0610010K14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0030683.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72854019 72856406 - 0610010K14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0030684.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72854376 72856504 - MGP_C57BL6NJ_P0030684 0610010K14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030685.1 MGP_C57BL6NJ_G0018978.1 mouse_genomes_project 11 72855096 72856555 - 0610010K14Rik protein_coding retained_intron MGP_C57BL6NJ_T0031834.1 MGP_C57BL6NJ_G0019268.1 mouse_genomes_project 11 88996002 89001373 - MGP_C57BL6NJ_P0031834 Znhit3 protein_coding protein_coding MGP_C57BL6NJ_T0031835.1 MGP_C57BL6NJ_G0019268.1 mouse_genomes_project 11 88996343 89001356 - Znhit3 protein_coding processed_transcript MGP_C57BL6NJ_T0031836.1 MGP_C57BL6NJ_G0019268.1 mouse_genomes_project 11 88996521 89001373 - Znhit3 protein_coding processed_transcript MGP_C57BL6NJ_T0031837.1 MGP_C57BL6NJ_G0019268.1 mouse_genomes_project 11 88996557 89001312 - Znhit3 protein_coding processed_transcript MGP_C57BL6NJ_T0031838.1 MGP_C57BL6NJ_G0019268.1 mouse_genomes_project 11 89000445 89001331 - Znhit3 protein_coding retained_intron MGP_C57BL6NJ_T0012838.1 MGP_C57BL6NJ_G0010883.1 mouse_genomes_project 11 26370144 26370865 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034463.1 MGP_C57BL6NJ_G0019886.1 mouse_genomes_project 11 128581378 128583891 + MGP_C57BL6NJ_P0034463 0610009L18Rik protein_coding protein_coding MGP_C57BL6NJ_T0013085.1 MGP_C57BL6NJ_G0011130.1 mouse_genomes_project 11 124318936 124319239 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034614.1 MGP_C57BL6NJ_G0019915.1 mouse_genomes_project 11 128992178 128994678 + MGP_C57BL6NJ_P0034614 Rac3 protein_coding protein_coding MGP_C57BL6NJ_T0034615.1 MGP_C57BL6NJ_G0019915.1 mouse_genomes_project 11 128992281 128994315 + MGP_C57BL6NJ_P0034615 Rac3 protein_coding protein_coding MGP_C57BL6NJ_T0034616.1 MGP_C57BL6NJ_G0019915.1 mouse_genomes_project 11 128992722 128994274 + Rac3 protein_coding processed_transcript MGP_C57BL6NJ_T0030219.1 MGP_C57BL6NJ_G0018880.1 mouse_genomes_project 11 69580150 69606269 + MGP_C57BL6NJ_P0030219 Myh4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030220.1 MGP_C57BL6NJ_G0018880.1 mouse_genomes_project 11 69580552 69606375 + MGP_C57BL6NJ_P0030220 Myh4 protein_coding protein_coding MGP_C57BL6NJ_T0030221.1 MGP_C57BL6NJ_G0018880.1 mouse_genomes_project 11 69583120 69606334 + MGP_C57BL6NJ_P0030221 Myh4 protein_coding protein_coding MGP_C57BL6NJ_T0028611.1 MGP_C57BL6NJ_G0018458.1 mouse_genomes_project 11 18536151 18558496 - MGP_C57BL6NJ_P0028611 Cep68 protein_coding protein_coding MGP_C57BL6NJ_T0028612.1 MGP_C57BL6NJ_G0018458.1 mouse_genomes_project 11 18547497 18558496 - MGP_C57BL6NJ_P0028612 Cep68 protein_coding protein_coding MGP_C57BL6NJ_T0028613.1 MGP_C57BL6NJ_G0018458.1 mouse_genomes_project 11 18547498 18558507 - MGP_C57BL6NJ_P0028613 Cep68 protein_coding protein_coding MGP_C57BL6NJ_T0028614.1 MGP_C57BL6NJ_G0018458.1 mouse_genomes_project 11 18550632 18558461 - Cep68 protein_coding retained_intron MGP_C57BL6NJ_T0029347.1 MGP_C57BL6NJ_G0018646.1 mouse_genomes_project 11 51589226 51599033 - MGP_C57BL6NJ_P0029347 Zfp354b protein_coding protein_coding MGP_C57BL6NJ_T0029348.1 MGP_C57BL6NJ_G0018646.1 mouse_genomes_project 11 51589694 51598333 - MGP_C57BL6NJ_P0029348 Zfp354b protein_coding protein_coding MGP_C57BL6NJ_T0029349.1 MGP_C57BL6NJ_G0018646.1 mouse_genomes_project 11 51595967 51598049 - Zfp354b protein_coding processed_transcript MGP_C57BL6NJ_T0031043.1 MGP_C57BL6NJ_G0019071.1 mouse_genomes_project 11 76970563 76971654 + MGP_C57BL6NJ_P0031043 Olfr397 protein_coding protein_coding MGP_C57BL6NJ_T0032339.1 MGP_C57BL6NJ_G0019393.1 mouse_genomes_project 11 101582475 101585607 + MGP_C57BL6NJ_P0032339 Hoxb13 protein_coding protein_coding MGP_C57BL6NJ_T0031653.1 MGP_C57BL6NJ_G0019220.1 mouse_genomes_project 11 86506321 86558487 - MGP_C57BL6NJ_P0031653 Cct6b protein_coding protein_coding MGP_C57BL6NJ_T0031654.1 MGP_C57BL6NJ_G0019220.1 mouse_genomes_project 11 86506321 86558502 - MGP_C57BL6NJ_P0031654 Cct6b protein_coding protein_coding MGP_C57BL6NJ_T0034635.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092949 129100152 - MGP_C57BL6NJ_P0034635 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0034636.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092950 129094196 - Dus1l protein_coding retained_intron MGP_C57BL6NJ_T0034637.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092950 129100144 - MGP_C57BL6NJ_P0034637 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0034638.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092950 129100144 - MGP_C57BL6NJ_P0034638 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0034639.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092952 129093599 - Dus1l protein_coding retained_intron MGP_C57BL6NJ_T0034640.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092954 129100138 - Dus1l protein_coding retained_intron MGP_C57BL6NJ_T0034641.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129092954 129100147 - MGP_C57BL6NJ_P0034641 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0034642.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129096522 129100126 - MGP_C57BL6NJ_P0034642 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0034643.1 MGP_C57BL6NJ_G0019921.1 mouse_genomes_project 11 129097593 129100142 - MGP_C57BL6NJ_P0034643 Dus1l protein_coding protein_coding MGP_C57BL6NJ_T0028677.1 MGP_C57BL6NJ_G0018475.1 mouse_genomes_project 11 21542763 21546045 + MGP_C57BL6NJ_P0028677 Zrsr1 protein_coding protein_coding MGP_C57BL6NJ_T0029755.1 MGP_C57BL6NJ_G0018777.1 mouse_genomes_project 11 60621918 60629390 + MGP_C57BL6NJ_P0029755 Trim17 protein_coding protein_coding MGP_C57BL6NJ_T0034705.1 MGP_C57BL6NJ_G0019936.1 mouse_genomes_project 11 129612379 129678586 + MGP_C57BL6NJ_P0034705 Foxk2 protein_coding protein_coding MGP_C57BL6NJ_T0034706.1 MGP_C57BL6NJ_G0019936.1 mouse_genomes_project 11 129644353 129650699 + Foxk2 protein_coding processed_transcript MGP_C57BL6NJ_T0034707.1 MGP_C57BL6NJ_G0019936.1 mouse_genomes_project 11 129652110 129654766 + Foxk2 protein_coding retained_intron MGP_C57BL6NJ_T0029206.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726008 49741369 + MGP_C57BL6NJ_P0029206 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029207.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726012 49738096 + MGP_C57BL6NJ_P0029207 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029208.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726201 49736452 + Zfp62 protein_coding processed_transcript MGP_C57BL6NJ_T0029209.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726201 49737726 + Zfp62 protein_coding retained_intron MGP_C57BL6NJ_T0029210.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726201 49737927 + MGP_C57BL6NJ_P0029210 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029211.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726214 49741632 + MGP_C57BL6NJ_P0029211 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029212.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726222 49738486 + MGP_C57BL6NJ_P0029212 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029213.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49726450 49737993 + MGP_C57BL6NJ_P0029213 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029214.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49727035 49740579 + MGP_C57BL6NJ_P0029214 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029215.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49735503 49741625 + MGP_C57BL6NJ_P0029215 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029216.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49736407 49738139 + MGP_C57BL6NJ_P0029216 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0029217.1 MGP_C57BL6NJ_G0018612.1 mouse_genomes_project 11 49737364 49741625 + MGP_C57BL6NJ_P0029217 Zfp62 protein_coding protein_coding MGP_C57BL6NJ_T0013036.1 MGP_C57BL6NJ_G0011081.1 mouse_genomes_project 11 105093033 105096788 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012917.1 MGP_C57BL6NJ_G0010962.1 mouse_genomes_project 11 56661725 56661895 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028350.1 MGP_C57BL6NJ_G0018392.1 mouse_genomes_project 11 2289684 2362401 - MGP_C57BL6NJ_P0028350 Kremen1 protein_coding protein_coding MGP_C57BL6NJ_T0028351.1 MGP_C57BL6NJ_G0018392.1 mouse_genomes_project 11 2303544 2338820 - MGP_C57BL6NJ_P0028351 Kremen1 protein_coding protein_coding MGP_C57BL6NJ_T0013084.1 MGP_C57BL6NJ_G0011129.1 mouse_genomes_project 11 124180489 124180945 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028515.1 MGP_C57BL6NJ_G0018436.1 mouse_genomes_project 11 8849322 9037117 - MGP_C57BL6NJ_P0028515 Zpbp protein_coding protein_coding MGP_C57BL6NJ_T0033351.1 MGP_C57BL6NJ_G0019656.1 mouse_genomes_project 11 109929446 110020831 - MGP_C57BL6NJ_P0033351 Gm884 protein_coding protein_coding MGP_C57BL6NJ_T0012060.1 MGP_C57BL6NJ_G0010143.1 mouse_genomes_project 11 76379951 76380885 - MGP_C57BL6NJ_P0012060 Olfr379-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0029062.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43493932 43498465 + MGP_C57BL6NJ_P0029062 Slu7 protein_coding protein_coding MGP_C57BL6NJ_T0029063.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43493932 43505571 + MGP_C57BL6NJ_P0029063 Slu7 protein_coding protein_coding MGP_C57BL6NJ_T0029064.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43493947 43508167 + MGP_C57BL6NJ_P0029064 Slu7 protein_coding protein_coding MGP_C57BL6NJ_T0029065.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43497531 43508167 + MGP_C57BL6NJ_P0029065 Slu7 protein_coding protein_coding MGP_C57BL6NJ_T0029066.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43497563 43499398 + Slu7 protein_coding processed_transcript MGP_C57BL6NJ_T0029067.1 MGP_C57BL6NJ_G0018567.1 mouse_genomes_project 11 43501592 43502818 + Slu7 protein_coding processed_transcript MGP_C57BL6NJ_T0017694.1 MGP_C57BL6NJ_G0015585.1 mouse_genomes_project 11 88905196 88906887 + 4930502E09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0030822.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73686982 73713592 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030823.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73686996 73713606 - MGP_C57BL6NJ_P0030823 Nup88 protein_coding protein_coding MGP_C57BL6NJ_T0030824.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687001 73690287 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030825.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687006 73713595 - MGP_C57BL6NJ_P0030825 Nup88 protein_coding protein_coding MGP_C57BL6NJ_T0030826.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687026 73713587 - MGP_C57BL6NJ_P0030826 Nup88 protein_coding protein_coding MGP_C57BL6NJ_T0030827.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687100 73713513 - MGP_C57BL6NJ_P0030827 Nup88 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030828.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687803 73689025 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030829.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687862 73688413 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030830.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73687904 73688662 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030831.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73688337 73688959 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030832.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73688607 73692740 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030833.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73693489 73713594 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030834.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73698374 73700376 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030835.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73699072 73700827 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0030836.1 MGP_C57BL6NJ_G0019009.1 mouse_genomes_project 11 73700113 73705705 - Nup88 protein_coding retained_intron MGP_C57BL6NJ_T0012860.1 MGP_C57BL6NJ_G0010905.1 mouse_genomes_project 11 32032364 32033322 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033642.1 MGP_C57BL6NJ_G0019722.1 mouse_genomes_project 11 116176361 116259279 - MGP_C57BL6NJ_P0033642 Rgs9 protein_coding protein_coding MGP_C57BL6NJ_T0033643.1 MGP_C57BL6NJ_G0019722.1 mouse_genomes_project 11 116176367 116202705 - MGP_C57BL6NJ_P0033643 Rgs9 protein_coding protein_coding MGP_C57BL6NJ_T0033644.1 MGP_C57BL6NJ_G0019722.1 mouse_genomes_project 11 116186048 116259216 - MGP_C57BL6NJ_P0033644 Rgs9 protein_coding protein_coding MGP_C57BL6NJ_T0033645.1 MGP_C57BL6NJ_G0019722.1 mouse_genomes_project 11 116191745 116199519 - Rgs9 protein_coding processed_transcript MGP_C57BL6NJ_T0033646.1 MGP_C57BL6NJ_G0019722.1 mouse_genomes_project 11 116209402 116259256 - MGP_C57BL6NJ_P0033646 Rgs9 protein_coding protein_coding MGP_C57BL6NJ_T0032016.1 MGP_C57BL6NJ_G0019309.1 mouse_genomes_project 11 92245901 92258563 - MGP_C57BL6NJ_P0032016 protein_coding protein_coding MGP_C57BL6NJ_T0003480.1 MGP_C57BL6NJ_G0003199.1 mouse_genomes_project 11 116323285 116338503 - Gm11696 antisense antisense MGP_C57BL6NJ_T0003481.1 MGP_C57BL6NJ_G0003199.1 mouse_genomes_project 11 116324221 116324876 - Gm11696 antisense antisense MGP_C57BL6NJ_T0003482.1 MGP_C57BL6NJ_G0003199.1 mouse_genomes_project 11 116327775 116338947 - Gm11696 antisense antisense MGP_C57BL6NJ_T0003483.1 MGP_C57BL6NJ_G0003199.1 mouse_genomes_project 11 116328178 116338536 - Gm11696 antisense antisense MGP_C57BL6NJ_T0012063.1 MGP_C57BL6NJ_G0010146.1 mouse_genomes_project 11 76920818 76924762 + MGP_C57BL6NJ_P0012063 Olfr396-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012064.1 MGP_C57BL6NJ_G0010146.1 mouse_genomes_project 11 76924042 76924675 + MGP_C57BL6NJ_P0012064 Olfr396-ps1 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0030155.1 MGP_C57BL6NJ_G0018862.1 mouse_genomes_project 11 66070068 66196616 - MGP_C57BL6NJ_P0030155 Cox10 protein_coding protein_coding MGP_C57BL6NJ_T0030156.1 MGP_C57BL6NJ_G0018862.1 mouse_genomes_project 11 66188517 66196618 - Cox10 protein_coding processed_transcript MGP_C57BL6NJ_T0029788.1 MGP_C57BL6NJ_G0018786.1 mouse_genomes_project 11 60945090 60988054 - MGP_C57BL6NJ_P0029788 Wnt3a protein_coding protein_coding MGP_C57BL6NJ_T0101064.1 MGP_C57BL6NJ_G0039110.1 mouse_genomes_project 11 87286235 87286367 - Gm23951 snoRNA snoRNA MGP_C57BL6NJ_T0031159.1 MGP_C57BL6NJ_G0019105.1 mouse_genomes_project 11 78635625 78674711 + MGP_C57BL6NJ_P0031159 Prpf8 protein_coding protein_coding MGP_C57BL6NJ_T0031160.1 MGP_C57BL6NJ_G0019105.1 mouse_genomes_project 11 78635629 78674713 + MGP_C57BL6NJ_P0031160 Prpf8 protein_coding protein_coding MGP_C57BL6NJ_T0031161.1 MGP_C57BL6NJ_G0019105.1 mouse_genomes_project 11 78635664 78644630 + MGP_C57BL6NJ_P0031161 Prpf8 protein_coding protein_coding MGP_C57BL6NJ_T0031162.1 MGP_C57BL6NJ_G0019105.1 mouse_genomes_project 11 78635901 78674719 + MGP_C57BL6NJ_P0031162 Prpf8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031163.1 MGP_C57BL6NJ_G0019105.1 mouse_genomes_project 11 78641055 78642745 + Prpf8 protein_coding retained_intron MGP_C57BL6NJ_T0012975.1 MGP_C57BL6NJ_G0011020.1 mouse_genomes_project 11 77365921 77366843 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028821.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28658592 28712592 + MGP_C57BL6NJ_P0028821 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028822.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28658592 28714007 + MGP_C57BL6NJ_P0028822 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028823.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28658592 28712592 + MGP_C57BL6NJ_P0028823 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028824.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28658593 28711787 + MGP_C57BL6NJ_P0028824 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028825.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28659419 28712592 + MGP_C57BL6NJ_P0028825 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028826.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28687167 28712592 + MGP_C57BL6NJ_P0028826 Rtn4 protein_coding protein_coding MGP_C57BL6NJ_T0028827.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28702387 28712111 + Rtn4 protein_coding processed_transcript MGP_C57BL6NJ_T0028828.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28702462 28712023 + Rtn4 protein_coding processed_transcript MGP_C57BL6NJ_T0028829.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28705173 28712023 + Rtn4 protein_coding processed_transcript MGP_C57BL6NJ_T0028830.1 MGP_C57BL6NJ_G0018504.1 mouse_genomes_project 11 28710685 28711961 + Rtn4 protein_coding processed_transcript MGP_C57BL6NJ_T0028795.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28321207 28461657 + MGP_C57BL6NJ_P0028795 Ccdc88a protein_coding protein_coding MGP_C57BL6NJ_T0028796.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28321326 28373096 + MGP_C57BL6NJ_P0028796 Ccdc88a protein_coding protein_coding MGP_C57BL6NJ_T0028797.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28407513 28412247 + Ccdc88a protein_coding processed_transcript MGP_C57BL6NJ_T0028798.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28414906 28433512 + MGP_C57BL6NJ_P0028798 Ccdc88a protein_coding protein_coding MGP_C57BL6NJ_T0028799.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28421372 28454955 + MGP_C57BL6NJ_P0028799 Ccdc88a protein_coding protein_coding MGP_C57BL6NJ_T0028800.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28436689 28454367 + MGP_C57BL6NJ_P0028800 Ccdc88a protein_coding protein_coding MGP_C57BL6NJ_T0028801.1 MGP_C57BL6NJ_G0018499.1 mouse_genomes_project 11 28444704 28448635 + Ccdc88a protein_coding processed_transcript MGP_C57BL6NJ_T0013076.1 MGP_C57BL6NJ_G0011121.1 mouse_genomes_project 11 121770962 121772095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099246.1 MGP_C57BL6NJ_G0037310.1 mouse_genomes_project 11 123941933 123942059 - Gm26413 scaRNA scaRNA MGP_C57BL6NJ_T0029401.1 MGP_C57BL6NJ_G0018662.1 mouse_genomes_project 11 52438699 52446473 - MGP_C57BL6NJ_P0029401 N4bp3 protein_coding protein_coding MGP_C57BL6NJ_T0029402.1 MGP_C57BL6NJ_G0018662.1 mouse_genomes_project 11 52441190 52446468 - MGP_C57BL6NJ_P0029402 N4bp3 protein_coding protein_coding MGP_C57BL6NJ_T0029403.1 MGP_C57BL6NJ_G0018662.1 mouse_genomes_project 11 52441255 52446451 - MGP_C57BL6NJ_P0029403 N4bp3 protein_coding protein_coding MGP_C57BL6NJ_T0099768.1 MGP_C57BL6NJ_G0037814.1 mouse_genomes_project 11 77808560 77808667 + Gm24211 snRNA snRNA MGP_C57BL6NJ_T0032541.1 MGP_C57BL6NJ_G0019443.1 mouse_genomes_project 11 103625741 103642970 - MGP_C57BL6NJ_P0032541 Stac2 protein_coding protein_coding MGP_C57BL6NJ_T0032542.1 MGP_C57BL6NJ_G0019443.1 mouse_genomes_project 11 103629216 103632617 - MGP_C57BL6NJ_P0032542 Stac2 protein_coding protein_coding MGP_C57BL6NJ_T0099786.1 MGP_C57BL6NJ_G0037832.1 mouse_genomes_project 11 93417031 93417138 + Gm23507 snRNA snRNA MGP_C57BL6NJ_T0003298.1 MGP_C57BL6NJ_G0003049.1 mouse_genomes_project 11 44801971 44805100 - Gm12158 antisense antisense MGP_C57BL6NJ_T0013012.1 MGP_C57BL6NJ_G0011057.1 mouse_genomes_project 11 92319757 92319930 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028542.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9551230 9613623 - MGP_C57BL6NJ_P0028542 Grb10 protein_coding protein_coding MGP_C57BL6NJ_T0028543.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9557457 9559356 - Grb10 protein_coding processed_transcript MGP_C57BL6NJ_T0028544.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9565629 9567070 - Grb10 protein_coding processed_transcript MGP_C57BL6NJ_T0028545.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9570339 9576764 - Grb10 protein_coding processed_transcript MGP_C57BL6NJ_T0028546.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9575483 9662406 - MGP_C57BL6NJ_P0028546 Grb10 protein_coding protein_coding MGP_C57BL6NJ_T0028547.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9589463 9649051 - MGP_C57BL6NJ_P0028547 Grb10 protein_coding protein_coding MGP_C57BL6NJ_T0028548.1 MGP_C57BL6NJ_G0018441.1 mouse_genomes_project 11 9589557 9649459 - MGP_C57BL6NJ_P0028548 Grb10 protein_coding protein_coding MGP_C57BL6NJ_T0017648.1 MGP_C57BL6NJ_G0015560.1 mouse_genomes_project 11 46016486 46049692 + F630206G17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012951.1 MGP_C57BL6NJ_G0010996.1 mouse_genomes_project 11 68833419 68834398 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003427.1 MGP_C57BL6NJ_G0003153.1 mouse_genomes_project 11 102196882 102198350 + Gm11537 antisense antisense MGP_C57BL6NJ_T0029524.1 MGP_C57BL6NJ_G0018697.1 mouse_genomes_project 11 54792829 54793736 - MGP_C57BL6NJ_P0029524 Gm17334 protein_coding protein_coding MGP_C57BL6NJ_T0030710.1 MGP_C57BL6NJ_G0018986.1 mouse_genomes_project 11 73125845 73127164 + MGP_C57BL6NJ_P0030710 Med11 protein_coding protein_coding MGP_C57BL6NJ_T0030711.1 MGP_C57BL6NJ_G0018986.1 mouse_genomes_project 11 73125845 73127651 + MGP_C57BL6NJ_P0030711 Med11 protein_coding protein_coding MGP_C57BL6NJ_T0030712.1 MGP_C57BL6NJ_G0018986.1 mouse_genomes_project 11 73125858 73127488 + Med11 protein_coding retained_intron MGP_C57BL6NJ_T0012994.1 MGP_C57BL6NJ_G0011039.1 mouse_genomes_project 11 84507083 84507497 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017755.1 MGP_C57BL6NJ_G0015618.1 mouse_genomes_project 11 128406512 128409864 - 2810410L24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017756.1 MGP_C57BL6NJ_G0015618.1 mouse_genomes_project 11 128408819 128410965 - 2810410L24Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0034512.1 MGP_C57BL6NJ_G0019896.1 mouse_genomes_project 11 128731258 128735711 + MGP_C57BL6NJ_P0034512 Mrpl12 protein_coding protein_coding MGP_C57BL6NJ_T0034513.1 MGP_C57BL6NJ_G0019896.1 mouse_genomes_project 11 128731672 128735103 + Mrpl12 protein_coding processed_transcript MGP_C57BL6NJ_T0099758.1 MGP_C57BL6NJ_G0037804.1 mouse_genomes_project 11 63893461 63893568 - Gm23721 snRNA snRNA MGP_C57BL6NJ_T0029722.1 MGP_C57BL6NJ_G0018755.1 mouse_genomes_project 11 60142224 60150793 - MGP_C57BL6NJ_P0029722 2210407C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0029723.1 MGP_C57BL6NJ_G0018755.1 mouse_genomes_project 11 60142229 60148210 - MGP_C57BL6NJ_P0029723 2210407C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0029724.1 MGP_C57BL6NJ_G0018755.1 mouse_genomes_project 11 60147032 60148203 - 2210407C18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0003447.1 MGP_C57BL6NJ_G0003168.1 mouse_genomes_project 11 107440655 107462835 - antisense antisense MGP_C57BL6NJ_T0017679.1 MGP_C57BL6NJ_G0015578.1 mouse_genomes_project 11 78594140 78599278 + Mir22hg processed_transcript processed_transcript MGP_C57BL6NJ_T0017680.1 MGP_C57BL6NJ_G0015578.1 mouse_genomes_project 11 78594245 78596631 + Mir22hg processed_transcript processed_transcript MGP_C57BL6NJ_T0006499.1 MGP_C57BL6NJ_G0005414.1 mouse_genomes_project 11 107773634 107774196 + Gm11635 lincRNA lincRNA MGP_C57BL6NJ_T0006500.1 MGP_C57BL6NJ_G0005414.1 mouse_genomes_project 11 107773720 107778822 + Gm11635 lincRNA lincRNA MGP_C57BL6NJ_T0006333.1 MGP_C57BL6NJ_G0005284.1 mouse_genomes_project 11 4558316 4578657 - Gm11986 lincRNA lincRNA MGP_C57BL6NJ_T0013061.1 MGP_C57BL6NJ_G0011106.1 mouse_genomes_project 11 112493561 112494570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034336.1 MGP_C57BL6NJ_G0019864.1 mouse_genomes_project 11 127132791 127142875 + MGP_C57BL6NJ_P0034336 Cbx2 protein_coding protein_coding MGP_C57BL6NJ_T0034337.1 MGP_C57BL6NJ_G0019864.1 mouse_genomes_project 11 127135329 127139643 + Cbx2 protein_coding processed_transcript MGP_C57BL6NJ_T0029608.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56064348 56110534 - Tnip1 protein_coding processed_transcript MGP_C57BL6NJ_T0029609.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56064348 56117312 - MGP_C57BL6NJ_P0029609 Tnip1 protein_coding protein_coding MGP_C57BL6NJ_T0029610.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56065098 56110556 - MGP_C57BL6NJ_P0029610 Tnip1 protein_coding protein_coding MGP_C57BL6NJ_T0029611.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56072172 56074637 - Tnip1 protein_coding retained_intron MGP_C57BL6NJ_T0029612.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56080261 56110552 - MGP_C57BL6NJ_P0029612 Tnip1 protein_coding protein_coding MGP_C57BL6NJ_T0029613.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56087570 56110477 - MGP_C57BL6NJ_P0029613 Tnip1 protein_coding protein_coding MGP_C57BL6NJ_T0029614.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56095059 56110517 - Tnip1 protein_coding processed_transcript MGP_C57BL6NJ_T0029615.1 MGP_C57BL6NJ_G0018714.1 mouse_genomes_project 11 56095113 56117311 - Tnip1 protein_coding processed_transcript MGP_C57BL6NJ_T0012962.1 MGP_C57BL6NJ_G0011007.1 mouse_genomes_project 11 73101348 73101886 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017684.1 MGP_C57BL6NJ_G0015581.1 mouse_genomes_project 11 81759187 81760296 - Gm11193 processed_transcript processed_transcript MGP_C57BL6NJ_T0034286.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126190605 126312250 - MGP_C57BL6NJ_P0034286 Cyth1 protein_coding protein_coding MGP_C57BL6NJ_T0034287.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126226197 126274366 - MGP_C57BL6NJ_P0034287 Cyth1 protein_coding protein_coding MGP_C57BL6NJ_T0034288.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126226197 126312340 - MGP_C57BL6NJ_P0034288 Cyth1 protein_coding protein_coding MGP_C57BL6NJ_T0034289.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126226206 126312308 - MGP_C57BL6NJ_P0034289 Cyth1 protein_coding protein_coding MGP_C57BL6NJ_T0034290.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126247003 126288603 - Cyth1 protein_coding processed_transcript MGP_C57BL6NJ_T0034291.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126247458 126280649 - Cyth1 protein_coding processed_transcript MGP_C57BL6NJ_T0034292.1 MGP_C57BL6NJ_G0019854.1 mouse_genomes_project 11 126247477 126274366 - MGP_C57BL6NJ_P0034292 Cyth1 protein_coding protein_coding MGP_C57BL6NJ_T0029728.1 MGP_C57BL6NJ_G0018758.1 mouse_genomes_project 11 60267256 60268177 + MGP_C57BL6NJ_P0029728 Olfr319 protein_coding protein_coding MGP_C57BL6NJ_T0029721.1 MGP_C57BL6NJ_G0018754.1 mouse_genomes_project 11 60131365 60132487 + MGP_C57BL6NJ_P0029721 Olfr324 protein_coding protein_coding MGP_C57BL6NJ_T0028250.1 MGP_C57BL6NJ_G0018373.1 mouse_genomes_project 11 1230788 1234973 + MGP_C57BL6NJ_P0028250 Gatsl3 protein_coding protein_coding MGP_C57BL6NJ_T0032318.1 MGP_C57BL6NJ_G0019385.1 mouse_genomes_project 11 101181420 101236609 - MGP_C57BL6NJ_P0032318 B4galnt2 protein_coding protein_coding MGP_C57BL6NJ_T0034686.1 MGP_C57BL6NJ_G0019931.1 mouse_genomes_project 11 129511590 129513293 + MGP_C57BL6NJ_P0034686 Uts2r protein_coding protein_coding MGP_C57BL6NJ_T0028963.1 MGP_C57BL6NJ_G0018542.1 mouse_genomes_project 11 32944232 32970254 + MGP_C57BL6NJ_P0028963 D130052B06Rik protein_coding protein_coding MGP_C57BL6NJ_T0030607.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72612637 72616679 + MGP_C57BL6NJ_P0030607 Phf23 protein_coding protein_coding MGP_C57BL6NJ_T0030608.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72612755 72615046 + Phf23 protein_coding retained_intron MGP_C57BL6NJ_T0030609.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72612781 72616676 + MGP_C57BL6NJ_P0030609 Phf23 protein_coding protein_coding MGP_C57BL6NJ_T0030610.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72613492 72615421 + MGP_C57BL6NJ_P0030610 Phf23 protein_coding protein_coding MGP_C57BL6NJ_T0030611.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72613702 72615166 + Phf23 protein_coding processed_transcript MGP_C57BL6NJ_T0030612.1 MGP_C57BL6NJ_G0018967.1 mouse_genomes_project 11 72613718 72615067 + Phf23 protein_coding processed_transcript MGP_C57BL6NJ_T0003438.1 MGP_C57BL6NJ_G0003162.1 mouse_genomes_project 11 105189905 105190463 + Gm11940 antisense antisense MGP_C57BL6NJ_T0032345.1 MGP_C57BL6NJ_G0019396.1 mouse_genomes_project 11 101680987 101684517 + MGP_C57BL6NJ_P0032345 Hoxb7 protein_coding protein_coding MGP_C57BL6NJ_T0032346.1 MGP_C57BL6NJ_G0019396.1 mouse_genomes_project 11 101683079 101683848 + Hoxb7 protein_coding processed_transcript MGP_C57BL6NJ_T0032710.1 MGP_C57BL6NJ_G0019489.1 mouse_genomes_project 11 105356075 105356811 - MGP_C57BL6NJ_P0032710 protein_coding protein_coding MGP_C57BL6NJ_T0099760.1 MGP_C57BL6NJ_G0037806.1 mouse_genomes_project 11 71397280 71397383 + Gm22608 snRNA snRNA MGP_C57BL6NJ_T0030942.1 MGP_C57BL6NJ_G0019033.1 mouse_genomes_project 11 75339891 75347416 - Spns3 protein_coding processed_transcript MGP_C57BL6NJ_T0030943.1 MGP_C57BL6NJ_G0019033.1 mouse_genomes_project 11 75343127 75397377 - MGP_C57BL6NJ_P0030943 Spns3 protein_coding protein_coding MGP_C57BL6NJ_T0030944.1 MGP_C57BL6NJ_G0019033.1 mouse_genomes_project 11 75343132 75397172 - MGP_C57BL6NJ_P0030944 Spns3 protein_coding protein_coding MGP_C57BL6NJ_T0029976.1 MGP_C57BL6NJ_G0018828.1 mouse_genomes_project 11 63203281 63246820 - MGP_C57BL6NJ_P0029976 Slc47a2 protein_coding protein_coding MGP_C57BL6NJ_T0029977.1 MGP_C57BL6NJ_G0018828.1 mouse_genomes_project 11 63205571 63246810 - MGP_C57BL6NJ_P0029977 Slc47a2 protein_coding protein_coding MGP_C57BL6NJ_T0029978.1 MGP_C57BL6NJ_G0018828.1 mouse_genomes_project 11 63240875 63246544 - Slc47a2 protein_coding processed_transcript MGP_C57BL6NJ_T0017657.1 MGP_C57BL6NJ_G0015566.1 mouse_genomes_project 11 60623560 60635863 - 2310058D17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029119.1 MGP_C57BL6NJ_G0018583.1 mouse_genomes_project 11 46288440 46390187 + MGP_C57BL6NJ_P0029119 Adam19 protein_coding protein_coding MGP_C57BL6NJ_T0029120.1 MGP_C57BL6NJ_G0018583.1 mouse_genomes_project 11 46288506 46298690 + Adam19 protein_coding processed_transcript MGP_C57BL6NJ_T0029121.1 MGP_C57BL6NJ_G0018583.1 mouse_genomes_project 11 46367585 46386715 + Adam19 protein_coding processed_transcript MGP_C57BL6NJ_T0029122.1 MGP_C57BL6NJ_G0018583.1 mouse_genomes_project 11 46375352 46380510 + Adam19 protein_coding retained_intron MGP_C57BL6NJ_T0034464.1 MGP_C57BL6NJ_G0019887.1 mouse_genomes_project 11 128594232 128600867 + MGP_C57BL6NJ_P0034464 Fscn2 protein_coding protein_coding MGP_C57BL6NJ_T0034465.1 MGP_C57BL6NJ_G0019887.1 mouse_genomes_project 11 128599240 128600647 + Fscn2 protein_coding processed_transcript MGP_C57BL6NJ_T0034466.1 MGP_C57BL6NJ_G0019887.1 mouse_genomes_project 11 128599411 128600519 + Fscn2 protein_coding processed_transcript MGP_C57BL6NJ_T0099746.1 MGP_C57BL6NJ_G0037792.1 mouse_genomes_project 11 34300143 34300250 + Gm25799 snRNA snRNA MGP_C57BL6NJ_T0031115.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78018446 78270906 + MGP_C57BL6NJ_P0031115 Smg6 protein_coding protein_coding MGP_C57BL6NJ_T0031116.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78023150 78270906 + MGP_C57BL6NJ_P0031116 Smg6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031117.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78086551 78089397 + Smg6 protein_coding retained_intron MGP_C57BL6NJ_T0031118.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78091043 78245915 + MGP_C57BL6NJ_P0031118 Smg6 protein_coding protein_coding MGP_C57BL6NJ_T0031119.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78238980 78245915 + Smg6 protein_coding processed_transcript MGP_C57BL6NJ_T0031120.1 MGP_C57BL6NJ_G0019094.1 mouse_genomes_project 11 78266090 78269640 + Smg6 protein_coding processed_transcript MGP_C57BL6NJ_T0028278.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1819293 1911556 - MGP_C57BL6NJ_P0028278 Nf2 protein_coding protein_coding MGP_C57BL6NJ_T0028279.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1819295 1912107 - MGP_C57BL6NJ_P0028279 Nf2 protein_coding protein_coding MGP_C57BL6NJ_T0028280.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1821403 1839492 - Nf2 protein_coding retained_intron MGP_C57BL6NJ_T0028281.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1836321 1893377 - Nf2 protein_coding processed_transcript MGP_C57BL6NJ_T0028282.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1838820 1870609 - MGP_C57BL6NJ_P0028282 Nf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028283.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1845583 1911765 - MGP_C57BL6NJ_P0028283 Nf2 protein_coding protein_coding MGP_C57BL6NJ_T0028284.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1848813 1869684 - Nf2 protein_coding processed_transcript MGP_C57BL6NJ_T0028285.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1848862 1872991 - MGP_C57BL6NJ_P0028285 Nf2 protein_coding protein_coding MGP_C57BL6NJ_T0028286.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1854243 1874840 - MGP_C57BL6NJ_P0028286 Nf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028287.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1872948 1883616 - Nf2 protein_coding processed_transcript MGP_C57BL6NJ_T0028288.1 MGP_C57BL6NJ_G0018382.1 mouse_genomes_project 11 1888565 1911696 - MGP_C57BL6NJ_P0028288 Nf2 protein_coding protein_coding MGP_C57BL6NJ_T0099763.1 MGP_C57BL6NJ_G0037809.1 mouse_genomes_project 11 71768959 71769064 + Gm23194 snRNA snRNA MGP_C57BL6NJ_T0030976.1 MGP_C57BL6NJ_G0019040.1 mouse_genomes_project 11 75906530 75929363 + Camkk1 protein_coding retained_intron MGP_C57BL6NJ_T0030977.1 MGP_C57BL6NJ_G0019040.1 mouse_genomes_project 11 75906565 75929374 + MGP_C57BL6NJ_P0030977 Camkk1 protein_coding protein_coding MGP_C57BL6NJ_T0030978.1 MGP_C57BL6NJ_G0019040.1 mouse_genomes_project 11 75914107 75927594 + MGP_C57BL6NJ_P0030978 Camkk1 protein_coding protein_coding MGP_C57BL6NJ_T0032911.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113217 107118148 + MGP_C57BL6NJ_P0032911 Mlx protein_coding protein_coding MGP_C57BL6NJ_T0032912.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113217 107118148 + MGP_C57BL6NJ_P0032912 Mlx protein_coding protein_coding MGP_C57BL6NJ_T0032913.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113230 107117067 + Mlx protein_coding processed_transcript MGP_C57BL6NJ_T0032914.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113230 107117087 + Mlx protein_coding processed_transcript MGP_C57BL6NJ_T0032915.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113240 107118148 + MGP_C57BL6NJ_P0032915 Mlx protein_coding protein_coding MGP_C57BL6NJ_T0032916.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107113244 107114906 + MGP_C57BL6NJ_P0032916 Mlx protein_coding protein_coding MGP_C57BL6NJ_T0032917.1 MGP_C57BL6NJ_G0019570.1 mouse_genomes_project 11 107115602 107117459 + Mlx protein_coding processed_transcript MGP_C57BL6NJ_T0034250.1 MGP_C57BL6NJ_G0019845.1 mouse_genomes_project 11 125817902 125821685 + MGP_C57BL6NJ_P0034250 Syngr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034251.1 MGP_C57BL6NJ_G0019845.1 mouse_genomes_project 11 125817905 125822493 + MGP_C57BL6NJ_P0034251 Syngr2 protein_coding protein_coding MGP_C57BL6NJ_T0034252.1 MGP_C57BL6NJ_G0019845.1 mouse_genomes_project 11 125817914 125822502 + MGP_C57BL6NJ_P0034252 Syngr2 protein_coding protein_coding MGP_C57BL6NJ_T0034253.1 MGP_C57BL6NJ_G0019845.1 mouse_genomes_project 11 125820467 125821328 + MGP_C57BL6NJ_P0034253 Syngr2 protein_coding protein_coding MGP_C57BL6NJ_T0034254.1 MGP_C57BL6NJ_G0019845.1 mouse_genomes_project 11 125821200 125821622 + Syngr2 protein_coding retained_intron MGP_C57BL6NJ_T0028667.1 MGP_C57BL6NJ_G0018472.1 mouse_genomes_project 11 21396112 21551639 - MGP_C57BL6NJ_P0028667 Gm28048 protein_coding protein_coding MGP_C57BL6NJ_T0034487.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705009 128711049 + MGP_C57BL6NJ_P0034487 Ccdc137 protein_coding protein_coding MGP_C57BL6NJ_T0034488.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705020 128706264 + Ccdc137 protein_coding processed_transcript MGP_C57BL6NJ_T0034489.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705032 128705740 + Ccdc137 protein_coding retained_intron MGP_C57BL6NJ_T0034490.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705036 128707006 + MGP_C57BL6NJ_P0034490 Ccdc137 protein_coding protein_coding MGP_C57BL6NJ_T0034491.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705041 128709107 + MGP_C57BL6NJ_P0034491 Ccdc137 protein_coding protein_coding MGP_C57BL6NJ_T0034492.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128705080 128706899 + Ccdc137 protein_coding processed_transcript MGP_C57BL6NJ_T0034493.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128706695 128709223 + Ccdc137 protein_coding retained_intron MGP_C57BL6NJ_T0034494.1 MGP_C57BL6NJ_G0019893.1 mouse_genomes_project 11 128709156 128711048 + Ccdc137 protein_coding processed_transcript MGP_C57BL6NJ_T0013088.1 MGP_C57BL6NJ_G0011133.1 mouse_genomes_project 11 125950812 125951236 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003468.1 MGP_C57BL6NJ_G0003188.1 mouse_genomes_project 11 113553701 113555040 - Gm11706 antisense antisense MGP_C57BL6NJ_T0003314.1 MGP_C57BL6NJ_G0003064.1 mouse_genomes_project 11 55368074 55374970 + Gm12223 antisense antisense MGP_C57BL6NJ_T0030166.1 MGP_C57BL6NJ_G0018866.1 mouse_genomes_project 11 67171396 67336988 - MGP_C57BL6NJ_P0030166 Arhgap44 protein_coding protein_coding MGP_C57BL6NJ_T0030167.1 MGP_C57BL6NJ_G0018866.1 mouse_genomes_project 11 67171399 67337311 - MGP_C57BL6NJ_P0030167 Arhgap44 protein_coding protein_coding MGP_C57BL6NJ_T0030168.1 MGP_C57BL6NJ_G0018866.1 mouse_genomes_project 11 67171400 67337254 - MGP_C57BL6NJ_P0030168 Arhgap44 protein_coding protein_coding MGP_C57BL6NJ_T0030169.1 MGP_C57BL6NJ_G0018866.1 mouse_genomes_project 11 67221950 67336917 - MGP_C57BL6NJ_P0030169 Arhgap44 protein_coding protein_coding MGP_C57BL6NJ_T0011575.1 MGP_C57BL6NJ_G0009660.1 mouse_genomes_project 11 111709733 111709829 + Gm24290 misc_RNA misc_RNA MGP_C57BL6NJ_T0034172.1 MGP_C57BL6NJ_G0019831.1 mouse_genomes_project 11 124688390 124716983 - MGP_C57BL6NJ_P0034172 Mxra7 protein_coding protein_coding MGP_C57BL6NJ_T0034173.1 MGP_C57BL6NJ_G0019831.1 mouse_genomes_project 11 124692979 124716950 - MGP_C57BL6NJ_P0034173 Mxra7 protein_coding protein_coding MGP_C57BL6NJ_T0034174.1 MGP_C57BL6NJ_G0019831.1 mouse_genomes_project 11 124693227 124716940 - MGP_C57BL6NJ_P0034174 Mxra7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003513.1 MGP_C57BL6NJ_G0003224.1 mouse_genomes_project 11 128776886 128780595 - Gm11789 antisense antisense MGP_C57BL6NJ_T0003514.1 MGP_C57BL6NJ_G0003224.1 mouse_genomes_project 11 128776912 128781529 - Gm11789 antisense antisense MGP_C57BL6NJ_T0003515.1 MGP_C57BL6NJ_G0003224.1 mouse_genomes_project 11 128776938 128781825 - Gm11789 antisense antisense MGP_C57BL6NJ_T0003516.1 MGP_C57BL6NJ_G0003224.1 mouse_genomes_project 11 128778304 128781554 - Gm11789 antisense antisense MGP_C57BL6NJ_T0003517.1 MGP_C57BL6NJ_G0003224.1 mouse_genomes_project 11 128780249 128781538 - Gm11789 antisense antisense MGP_C57BL6NJ_T0012881.1 MGP_C57BL6NJ_G0010926.1 mouse_genomes_project 11 43736694 43737378 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012878.1 MGP_C57BL6NJ_G0010923.1 mouse_genomes_project 11 41717544 41717876 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032107.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98078848 98080688 + Car10 protein_coding processed_transcript MGP_C57BL6NJ_T0032108.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98079224 98504913 + MGP_C57BL6NJ_P0032108 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0032109.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98079224 98373038 + MGP_C57BL6NJ_P0032109 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0032110.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98079224 98618977 + MGP_C57BL6NJ_P0032110 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0032111.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98079234 98618512 + MGP_C57BL6NJ_P0032111 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0032112.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98080111 98172142 + MGP_C57BL6NJ_P0032112 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0032113.1 MGP_C57BL6NJ_G0019336.1 mouse_genomes_project 11 98080111 98618981 + MGP_C57BL6NJ_P0032113 Car10 protein_coding protein_coding MGP_C57BL6NJ_T0003400.1 MGP_C57BL6NJ_G0003134.1 mouse_genomes_project 11 90403820 90413623 + Brip1os antisense antisense MGP_C57BL6NJ_T0003401.1 MGP_C57BL6NJ_G0003134.1 mouse_genomes_project 11 90403833 90517453 + Brip1os antisense antisense MGP_C57BL6NJ_T0032871.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106846036 106876362 + MGP_C57BL6NJ_P0032871 protein_coding protein_coding MGP_C57BL6NJ_T0032872.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106846095 106849757 + MGP_C57BL6NJ_P0032872 protein_coding protein_coding MGP_C57BL6NJ_T0032873.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106846341 106876362 + MGP_C57BL6NJ_P0032873 protein_coding protein_coding MGP_C57BL6NJ_T0032874.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106848354 106851230 + MGP_C57BL6NJ_P0032874 protein_coding protein_coding MGP_C57BL6NJ_T0032875.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106848493 106876361 + MGP_C57BL6NJ_P0032875 protein_coding protein_coding MGP_C57BL6NJ_T0032876.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106848494 106867228 + protein_coding processed_transcript MGP_C57BL6NJ_T0032877.1 MGP_C57BL6NJ_G0019563.1 mouse_genomes_project 11 106870215 106871304 + protein_coding processed_transcript MGP_C57BL6NJ_T0012783.1 MGP_C57BL6NJ_G0010828.1 mouse_genomes_project 11 11937025 11937404 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030484.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72252974 72261912 - MGP_C57BL6NJ_P0030484 Senp3 protein_coding protein_coding MGP_C57BL6NJ_T0030485.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72252975 72254836 - Senp3 protein_coding retained_intron MGP_C57BL6NJ_T0030486.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72252980 72262150 - MGP_C57BL6NJ_P0030486 Senp3 protein_coding protein_coding MGP_C57BL6NJ_T0030487.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72253134 72258185 - Senp3 protein_coding retained_intron MGP_C57BL6NJ_T0030488.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72253200 72258753 - MGP_C57BL6NJ_P0030488 Senp3 protein_coding protein_coding MGP_C57BL6NJ_T0030489.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72253812 72254303 - Senp3 protein_coding retained_intron MGP_C57BL6NJ_T0030490.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72254092 72256807 - Senp3 protein_coding processed_transcript MGP_C57BL6NJ_T0030491.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72256907 72258079 - Senp3 protein_coding retained_intron MGP_C57BL6NJ_T0030492.1 MGP_C57BL6NJ_G0018938.1 mouse_genomes_project 11 72258222 72259261 - Senp3 protein_coding retained_intron MGP_C57BL6NJ_T0029960.1 MGP_C57BL6NJ_G0018825.1 mouse_genomes_project 11 63035708 63060899 - MGP_C57BL6NJ_P0029960 Usp22 protein_coding protein_coding MGP_C57BL6NJ_T0029961.1 MGP_C57BL6NJ_G0018825.1 mouse_genomes_project 11 63037942 63041316 - Usp22 protein_coding retained_intron MGP_C57BL6NJ_T0029962.1 MGP_C57BL6NJ_G0018825.1 mouse_genomes_project 11 63039633 63043308 - Usp22 protein_coding retained_intron MGP_C57BL6NJ_T0029963.1 MGP_C57BL6NJ_G0018825.1 mouse_genomes_project 11 63045318 63052199 - MGP_C57BL6NJ_P0029963 Usp22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029964.1 MGP_C57BL6NJ_G0018825.1 mouse_genomes_project 11 63046695 63060873 - Usp22 protein_coding retained_intron MGP_C57BL6NJ_T0033928.1 MGP_C57BL6NJ_G0019788.1 mouse_genomes_project 11 123297387 123301502 + MGP_C57BL6NJ_P0033928 Mrps7 protein_coding protein_coding MGP_C57BL6NJ_T0033929.1 MGP_C57BL6NJ_G0019788.1 mouse_genomes_project 11 123298329 123300464 + Mrps7 protein_coding processed_transcript MGP_C57BL6NJ_T0034482.1 MGP_C57BL6NJ_G0019891.1 mouse_genomes_project 11 128692020 128699167 - Pde6g protein_coding processed_transcript MGP_C57BL6NJ_T0034483.1 MGP_C57BL6NJ_G0019891.1 mouse_genomes_project 11 128692039 128699185 - Pde6g protein_coding processed_transcript MGP_C57BL6NJ_T0034484.1 MGP_C57BL6NJ_G0019891.1 mouse_genomes_project 11 128692041 128699233 - MGP_C57BL6NJ_P0034484 Pde6g protein_coding protein_coding MGP_C57BL6NJ_T0029352.1 MGP_C57BL6NJ_G0018648.1 mouse_genomes_project 11 51623150 51626110 - MGP_C57BL6NJ_P0029352 Prop1 protein_coding protein_coding MGP_C57BL6NJ_T0029353.1 MGP_C57BL6NJ_G0018648.1 mouse_genomes_project 11 51623536 51624799 - Prop1 protein_coding retained_intron MGP_C57BL6NJ_T0029354.1 MGP_C57BL6NJ_G0018648.1 mouse_genomes_project 11 51624558 51626096 - MGP_C57BL6NJ_P0029354 Prop1 protein_coding protein_coding MGP_C57BL6NJ_T0032405.1 MGP_C57BL6NJ_G0019409.1 mouse_genomes_project 11 102382922 102384311 + Prr15l protein_coding processed_transcript MGP_C57BL6NJ_T0032406.1 MGP_C57BL6NJ_G0019409.1 mouse_genomes_project 11 102384120 102390386 + MGP_C57BL6NJ_P0032406 Prr15l protein_coding protein_coding MGP_C57BL6NJ_T0032407.1 MGP_C57BL6NJ_G0019409.1 mouse_genomes_project 11 102384142 102392568 + MGP_C57BL6NJ_P0032407 Prr15l protein_coding protein_coding MGP_C57BL6NJ_T0032408.1 MGP_C57BL6NJ_G0019409.1 mouse_genomes_project 11 102384212 102390381 + MGP_C57BL6NJ_P0032408 Prr15l protein_coding protein_coding MGP_C57BL6NJ_T0032409.1 MGP_C57BL6NJ_G0019409.1 mouse_genomes_project 11 102386119 102390018 + MGP_C57BL6NJ_P0032409 Prr15l protein_coding protein_coding MGP_C57BL6NJ_T0013051.1 MGP_C57BL6NJ_G0011096.1 mouse_genomes_project 11 110006333 110007197 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033333.1 MGP_C57BL6NJ_G0019652.1 mouse_genomes_project 11 109581694 109629397 - MGP_C57BL6NJ_P0033333 Map3k14 protein_coding protein_coding MGP_C57BL6NJ_T0033334.1 MGP_C57BL6NJ_G0019652.1 mouse_genomes_project 11 109582737 109583780 - Map3k14 protein_coding processed_transcript MGP_C57BL6NJ_T0033335.1 MGP_C57BL6NJ_G0019652.1 mouse_genomes_project 11 109598969 109604208 - Map3k14 protein_coding processed_transcript MGP_C57BL6NJ_T0033336.1 MGP_C57BL6NJ_G0019652.1 mouse_genomes_project 11 109601273 109602074 - Map3k14 protein_coding processed_transcript MGP_C57BL6NJ_T0029453.1 MGP_C57BL6NJ_G0018677.1 mouse_genomes_project 11 53288039 53300024 + 9530068E07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0029454.1 MGP_C57BL6NJ_G0018677.1 mouse_genomes_project 11 53288039 53304502 + MGP_C57BL6NJ_P0029454 9530068E07Rik protein_coding protein_coding MGP_C57BL6NJ_T0029455.1 MGP_C57BL6NJ_G0018677.1 mouse_genomes_project 11 53288039 53304507 + MGP_C57BL6NJ_P0029455 9530068E07Rik protein_coding protein_coding MGP_C57BL6NJ_T0029456.1 MGP_C57BL6NJ_G0018677.1 mouse_genomes_project 11 53288257 53299056 + 9530068E07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028253.1 MGP_C57BL6NJ_G0018375.1 mouse_genomes_project 11 1273899 1291663 + MGP_C57BL6NJ_P0028253 Lif protein_coding protein_coding MGP_C57BL6NJ_T0028254.1 MGP_C57BL6NJ_G0018375.1 mouse_genomes_project 11 1285944 1287398 + Lif protein_coding processed_transcript MGP_C57BL6NJ_T0028255.1 MGP_C57BL6NJ_G0018375.1 mouse_genomes_project 11 1286243 1291663 + MGP_C57BL6NJ_P0028255 Lif protein_coding protein_coding MGP_C57BL6NJ_T0032575.1 MGP_C57BL6NJ_G0019450.1 mouse_genomes_project 11 104005189 104006332 + MGP_C57BL6NJ_P0032575 Tcap protein_coding protein_coding MGP_C57BL6NJ_T0003371.1 MGP_C57BL6NJ_G0003111.1 mouse_genomes_project 11 72262203 72272550 + Tnfsf13os antisense antisense MGP_C57BL6NJ_T0003372.1 MGP_C57BL6NJ_G0003111.1 mouse_genomes_project 11 72264394 72272927 + Tnfsf13os antisense antisense MGP_C57BL6NJ_T0003373.1 MGP_C57BL6NJ_G0003111.1 mouse_genomes_project 11 72264566 72272927 + Tnfsf13os antisense antisense MGP_C57BL6NJ_T0030070.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64302507 64459632 - MGP_C57BL6NJ_P0030070 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030071.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64302507 64439104 - MGP_C57BL6NJ_P0030071 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030072.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64302802 64370347 - MGP_C57BL6NJ_P0030072 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030073.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64303713 64308041 - MGP_C57BL6NJ_P0030073 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030074.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64303909 64347234 - MGP_C57BL6NJ_P0030074 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030075.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64303909 64346458 - MGP_C57BL6NJ_P0030075 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030076.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64303909 64439070 - MGP_C57BL6NJ_P0030076 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030077.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64312081 64316884 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030078.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64312331 64317008 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030079.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64313950 64317783 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030080.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64327294 64332335 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030081.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64329860 64338833 - Ncor1 protein_coding processed_transcript MGP_C57BL6NJ_T0030082.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64332218 64384564 - MGP_C57BL6NJ_P0030082 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030083.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64341348 64359420 - Ncor1 protein_coding processed_transcript MGP_C57BL6NJ_T0030084.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64357106 64439104 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030085.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64364325 64375035 - MGP_C57BL6NJ_P0030085 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030086.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64364370 64376711 - MGP_C57BL6NJ_P0030086 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030087.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64364390 64375184 - MGP_C57BL6NJ_P0030087 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030088.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64364392 64460106 - MGP_C57BL6NJ_P0030088 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030089.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64367666 64375093 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030090.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64376624 64439104 - MGP_C57BL6NJ_P0030090 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030091.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64383953 64387097 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030092.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64387090 64395000 - Ncor1 protein_coding retained_intron MGP_C57BL6NJ_T0030093.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64393287 64459623 - MGP_C57BL6NJ_P0030093 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0030094.1 MGP_C57BL6NJ_G0018845.1 mouse_genomes_project 11 64417525 64460841 - MGP_C57BL6NJ_P0030094 Ncor1 protein_coding protein_coding MGP_C57BL6NJ_T0006428.1 MGP_C57BL6NJ_G0005365.1 mouse_genomes_project 11 73356246 73359829 - lincRNA lincRNA MGP_C57BL6NJ_T0003506.1 MGP_C57BL6NJ_G0003217.1 mouse_genomes_project 11 126172324 126175749 + Gm11738 antisense antisense MGP_C57BL6NJ_T0099781.1 MGP_C57BL6NJ_G0037827.1 mouse_genomes_project 11 91593359 91593465 - Gm22883 snRNA snRNA MGP_C57BL6NJ_T0028202.1 MGP_C57BL6NJ_G0018362.1 mouse_genomes_project 11 927872 971196 - MGP_C57BL6NJ_P0028202 4930556J24Rik protein_coding protein_coding MGP_C57BL6NJ_T0032760.1 MGP_C57BL6NJ_G0019533.1 mouse_genomes_project 11 106047741 106051912 - MGP_C57BL6NJ_P0032760 Krt15 protein_coding protein_coding MGP_C57BL6NJ_T0032761.1 MGP_C57BL6NJ_G0019533.1 mouse_genomes_project 11 106049018 106050382 - Krt15 protein_coding retained_intron MGP_C57BL6NJ_T0032232.1 MGP_C57BL6NJ_G0019362.1 mouse_genomes_project 11 99951758 99957802 - MGP_C57BL6NJ_P0032232 Tmem92 protein_coding protein_coding MGP_C57BL6NJ_T0032233.1 MGP_C57BL6NJ_G0019362.1 mouse_genomes_project 11 99952305 99957599 - MGP_C57BL6NJ_P0032233 Tmem92 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032234.1 MGP_C57BL6NJ_G0019362.1 mouse_genomes_project 11 99952305 99957599 - MGP_C57BL6NJ_P0032234 Tmem92 protein_coding protein_coding MGP_C57BL6NJ_T0032703.1 MGP_C57BL6NJ_G0019484.1 mouse_genomes_project 11 105187819 105191930 - MGP_C57BL6NJ_P0032703 Krt10 protein_coding protein_coding MGP_C57BL6NJ_T0098956.1 MGP_C57BL6NJ_G0037020.1 mouse_genomes_project 11 8710138 8710268 + Gm23065 rRNA rRNA MGP_C57BL6NJ_T0034355.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127411971 127431188 + MGP_C57BL6NJ_P0034355 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034356.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127412110 127431188 + MGP_C57BL6NJ_P0034356 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034357.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127412112 127417537 + MGP_C57BL6NJ_P0034357 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034358.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127414600 127419224 + Gaa protein_coding processed_transcript MGP_C57BL6NJ_T0034359.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127418652 127422411 + MGP_C57BL6NJ_P0034359 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034360.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127418940 127419705 + MGP_C57BL6NJ_P0034360 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034361.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127421798 127425297 + MGP_C57BL6NJ_P0034361 Gaa protein_coding protein_coding MGP_C57BL6NJ_T0034362.1 MGP_C57BL6NJ_G0019869.1 mouse_genomes_project 11 127422960 127423573 + Gaa protein_coding processed_transcript MGP_C57BL6NJ_T0013034.1 MGP_C57BL6NJ_G0011079.1 mouse_genomes_project 11 103659663 103659819 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029218.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49773805 49800220 + MGP_C57BL6NJ_P0029218 Mgat1 protein_coding protein_coding MGP_C57BL6NJ_T0029219.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49773860 49800225 + MGP_C57BL6NJ_P0029219 Mgat1 protein_coding protein_coding MGP_C57BL6NJ_T0029220.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49774023 49775075 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029221.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49774181 49775032 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029222.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49774845 49797889 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029223.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49777091 49800193 + MGP_C57BL6NJ_P0029223 Mgat1 protein_coding protein_coding MGP_C57BL6NJ_T0029224.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49777097 49798020 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029225.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49778571 49781252 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029226.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49780126 49800228 + MGP_C57BL6NJ_P0029226 Mgat1 protein_coding protein_coding MGP_C57BL6NJ_T0029227.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49780179 49787587 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029228.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49780186 49797889 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0029229.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49780204 49798489 + MGP_C57BL6NJ_P0029229 Mgat1 protein_coding protein_coding MGP_C57BL6NJ_T0029230.1 MGP_C57BL6NJ_G0018613.1 mouse_genomes_project 11 49785858 49787449 + Mgat1 protein_coding processed_transcript MGP_C57BL6NJ_T0006508.1 MGP_C57BL6NJ_G0005421.1 mouse_genomes_project 11 116315520 116324102 + 1700096J18Rik lincRNA lincRNA MGP_C57BL6NJ_T0032841.1 MGP_C57BL6NJ_G0019554.1 mouse_genomes_project 11 106608039 106637136 - MGP_C57BL6NJ_P0032841 Zfp385c protein_coding protein_coding MGP_C57BL6NJ_T0032842.1 MGP_C57BL6NJ_G0019554.1 mouse_genomes_project 11 106610453 106638127 - Zfp385c protein_coding processed_transcript MGP_C57BL6NJ_T0032843.1 MGP_C57BL6NJ_G0019554.1 mouse_genomes_project 11 106611216 106644031 - MGP_C57BL6NJ_P0032843 Zfp385c protein_coding protein_coding MGP_C57BL6NJ_T0032844.1 MGP_C57BL6NJ_G0019554.1 mouse_genomes_project 11 106619040 106672401 - MGP_C57BL6NJ_P0032844 Zfp385c protein_coding protein_coding MGP_C57BL6NJ_T0032319.1 MGP_C57BL6NJ_G0019386.1 mouse_genomes_project 11 101287956 101346277 - MGP_C57BL6NJ_P0032319 Igf2bp1 protein_coding protein_coding MGP_C57BL6NJ_T0032320.1 MGP_C57BL6NJ_G0019386.1 mouse_genomes_project 11 101294228 101298606 - Igf2bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0032321.1 MGP_C57BL6NJ_G0019386.1 mouse_genomes_project 11 101307444 101316895 - Igf2bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0032322.1 MGP_C57BL6NJ_G0019386.1 mouse_genomes_project 11 101308279 101316912 - Igf2bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0032323.1 MGP_C57BL6NJ_G0019386.1 mouse_genomes_project 11 101312682 101316909 - Igf2bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0099799.1 MGP_C57BL6NJ_G0037845.1 mouse_genomes_project 11 107826509 107826700 + Rnu2-10 snRNA snRNA MGP_C57BL6NJ_T0017602.1 MGP_C57BL6NJ_G0015539.1 mouse_genomes_project 11 224424 239136 + Gm11944 processed_transcript processed_transcript MGP_C57BL6NJ_T0031072.1 MGP_C57BL6NJ_G0019086.1 mouse_genomes_project 11 77692684 77715135 + MGP_C57BL6NJ_P0031072 Ccdc92b protein_coding protein_coding MGP_C57BL6NJ_T0012808.1 MGP_C57BL6NJ_G0010853.1 mouse_genomes_project 11 18443664 18443887 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102740.1 MGP_C57BL6NJ_G0040535.1 mouse_genomes_project 11 60619624 60620035 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0031337.1 MGP_C57BL6NJ_G0019142.1 mouse_genomes_project 11 80886611 80890145 - MGP_C57BL6NJ_P0031337 Gm10392 protein_coding protein_coding MGP_C57BL6NJ_T0029111.1 MGP_C57BL6NJ_G0018580.1 mouse_genomes_project 11 46155351 46172018 - MGP_C57BL6NJ_P0029111 Lsm11 protein_coding protein_coding MGP_C57BL6NJ_T0029112.1 MGP_C57BL6NJ_G0018580.1 mouse_genomes_project 11 46158162 46172018 - MGP_C57BL6NJ_P0029112 Lsm11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011577.1 MGP_C57BL6NJ_G0009662.1 mouse_genomes_project 11 124730244 124730417 - Gm27401 misc_RNA misc_RNA MGP_C57BL6NJ_T0028947.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32460193 32471249 - MGP_C57BL6NJ_P0028947 Npm1 protein_coding protein_coding MGP_C57BL6NJ_T0028948.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32460416 32471115 - MGP_C57BL6NJ_P0028948 Npm1 protein_coding protein_coding MGP_C57BL6NJ_T0028949.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32460417 32462508 - Npm1 protein_coding processed_transcript MGP_C57BL6NJ_T0028950.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32462969 32471120 - MGP_C57BL6NJ_P0028950 Npm1 protein_coding protein_coding MGP_C57BL6NJ_T0028951.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32463370 32471119 - MGP_C57BL6NJ_P0028951 Npm1 protein_coding protein_coding MGP_C57BL6NJ_T0028952.1 MGP_C57BL6NJ_G0018537.1 mouse_genomes_project 11 32464068 32465320 - Npm1 protein_coding processed_transcript MGP_C57BL6NJ_T0012061.1 MGP_C57BL6NJ_G0010144.1 mouse_genomes_project 11 76632359 76639896 + MGP_C57BL6NJ_P0012061 Olfr387-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0034165.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124518909 124542481 - MGP_C57BL6NJ_P0034165 St6galnac2 protein_coding protein_coding MGP_C57BL6NJ_T0034166.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124519495 124523285 - St6galnac2 protein_coding processed_transcript MGP_C57BL6NJ_T0034167.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124521089 124524897 - St6galnac2 protein_coding processed_transcript MGP_C57BL6NJ_T0034168.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124525289 124528423 - St6galnac2 protein_coding processed_transcript MGP_C57BL6NJ_T0034169.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124528522 124529524 - St6galnac2 protein_coding processed_transcript MGP_C57BL6NJ_T0034170.1 MGP_C57BL6NJ_G0019829.1 mouse_genomes_project 11 124536741 124542222 - St6galnac2 protein_coding processed_transcript MGP_C57BL6NJ_T0031250.1 MGP_C57BL6NJ_G0019123.1 mouse_genomes_project 11 79473171 79480076 + MGP_C57BL6NJ_P0031250 Rnmtl1 protein_coding protein_coding MGP_C57BL6NJ_T0031251.1 MGP_C57BL6NJ_G0019123.1 mouse_genomes_project 11 79473192 79474341 + Rnmtl1 protein_coding retained_intron MGP_C57BL6NJ_T0031252.1 MGP_C57BL6NJ_G0019123.1 mouse_genomes_project 11 79478668 79479965 + Rnmtl1 protein_coding processed_transcript MGP_C57BL6NJ_T0101019.1 MGP_C57BL6NJ_G0039065.1 mouse_genomes_project 11 19256093 19256222 - Gm22807 snoRNA snoRNA MGP_C57BL6NJ_T0012869.1 MGP_C57BL6NJ_G0010914.1 mouse_genomes_project 11 37843362 37844509 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030534.1 MGP_C57BL6NJ_G0018953.1 mouse_genomes_project 11 72459159 72466885 - MGP_C57BL6NJ_P0030534 Tnk1 protein_coding protein_coding MGP_C57BL6NJ_T0030535.1 MGP_C57BL6NJ_G0018953.1 mouse_genomes_project 11 72459373 72465280 - MGP_C57BL6NJ_P0030535 Tnk1 protein_coding protein_coding MGP_C57BL6NJ_T0030536.1 MGP_C57BL6NJ_G0018953.1 mouse_genomes_project 11 72460229 72463757 - MGP_C57BL6NJ_P0030536 Tnk1 protein_coding protein_coding MGP_C57BL6NJ_T0030537.1 MGP_C57BL6NJ_G0018953.1 mouse_genomes_project 11 72462634 72466885 - MGP_C57BL6NJ_P0030537 Tnk1 protein_coding protein_coding MGP_C57BL6NJ_T0030538.1 MGP_C57BL6NJ_G0018953.1 mouse_genomes_project 11 72463735 72466863 - MGP_C57BL6NJ_P0030538 Tnk1 protein_coding protein_coding MGP_C57BL6NJ_T0034653.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129277842 129288198 + MGP_C57BL6NJ_P0034653 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034654.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129278415 129286170 + MGP_C57BL6NJ_P0034654 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034655.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129278429 129288423 + MGP_C57BL6NJ_P0034655 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034656.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129278433 129286284 + MGP_C57BL6NJ_P0034656 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034657.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129278443 129290291 + MGP_C57BL6NJ_P0034657 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034658.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129280050 129284696 + MGP_C57BL6NJ_P0034658 Slc16a3 protein_coding protein_coding MGP_C57BL6NJ_T0034659.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129280500 129283635 + Slc16a3 protein_coding processed_transcript MGP_C57BL6NJ_T0034660.1 MGP_C57BL6NJ_G0019924.1 mouse_genomes_project 11 129284648 129285654 + Slc16a3 protein_coding retained_intron MGP_C57BL6NJ_T0012930.1 MGP_C57BL6NJ_G0010975.1 mouse_genomes_project 11 61197013 61197318 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003452.1 MGP_C57BL6NJ_G0003173.1 mouse_genomes_project 11 108184860 108185577 + Gm20659 antisense antisense MGP_C57BL6NJ_T0028578.1 MGP_C57BL6NJ_G0018448.1 mouse_genomes_project 11 15052079 15055498 + MGP_C57BL6NJ_P0028578 Cnrip1 protein_coding protein_coding MGP_C57BL6NJ_T0028579.1 MGP_C57BL6NJ_G0018448.1 mouse_genomes_project 11 15052296 15054736 + Cnrip1 protein_coding retained_intron MGP_C57BL6NJ_T0028580.1 MGP_C57BL6NJ_G0018448.1 mouse_genomes_project 11 15052311 15083237 + MGP_C57BL6NJ_P0028580 Cnrip1 protein_coding protein_coding MGP_C57BL6NJ_T0034175.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124727882 124733732 - Jmjd6 protein_coding retained_intron MGP_C57BL6NJ_T0034176.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124727882 124733900 - MGP_C57BL6NJ_P0034176 Jmjd6 protein_coding protein_coding MGP_C57BL6NJ_T0034177.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124727883 124733741 - Jmjd6 protein_coding retained_intron MGP_C57BL6NJ_T0034178.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124727883 124733806 - MGP_C57BL6NJ_P0034178 Jmjd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034179.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124727885 124731702 - MGP_C57BL6NJ_P0034179 Jmjd6 protein_coding protein_coding MGP_C57BL6NJ_T0034180.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124728038 124733156 - MGP_C57BL6NJ_P0034180 Jmjd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034181.1 MGP_C57BL6NJ_G0019832.1 mouse_genomes_project 11 124728063 124733171 - MGP_C57BL6NJ_P0034181 Jmjd6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017716.1 MGP_C57BL6NJ_G0015597.1 mouse_genomes_project 11 103608382 103612173 + Gm11629 processed_transcript processed_transcript MGP_C57BL6NJ_T0099793.1 MGP_C57BL6NJ_G0037839.1 mouse_genomes_project 11 104108271 104108405 - Gm25106 snRNA snRNA MGP_C57BL6NJ_T0030573.1 MGP_C57BL6NJ_G0018960.1 mouse_genomes_project 11 72529582 72534341 - MGP_C57BL6NJ_P0030573 Eif5a protein_coding protein_coding MGP_C57BL6NJ_T0030574.1 MGP_C57BL6NJ_G0018960.1 mouse_genomes_project 11 72530322 72533785 - MGP_C57BL6NJ_P0030574 Eif5a protein_coding protein_coding MGP_C57BL6NJ_T0032737.1 MGP_C57BL6NJ_G0019515.1 mouse_genomes_project 11 105698467 105699612 + MGP_C57BL6NJ_P0032737 Gm11568 protein_coding protein_coding MGP_C57BL6NJ_T0031037.1 MGP_C57BL6NJ_G0019066.1 mouse_genomes_project 11 76815963 76818726 - MGP_C57BL6NJ_P0031037 Olfr392 protein_coding protein_coding MGP_C57BL6NJ_T0031038.1 MGP_C57BL6NJ_G0019066.1 mouse_genomes_project 11 76816577 76818723 - MGP_C57BL6NJ_P0031038 Olfr392 protein_coding protein_coding MGP_C57BL6NJ_T0033470.1 MGP_C57BL6NJ_G0019686.1 mouse_genomes_project 11 112788910 112792797 - MGP_C57BL6NJ_P0033470 Limd2 protein_coding protein_coding MGP_C57BL6NJ_T0033471.1 MGP_C57BL6NJ_G0019686.1 mouse_genomes_project 11 112790968 112792064 - Limd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033472.1 MGP_C57BL6NJ_G0019686.1 mouse_genomes_project 11 112791085 112792582 - MGP_C57BL6NJ_P0033472 Limd2 protein_coding protein_coding MGP_C57BL6NJ_T0033473.1 MGP_C57BL6NJ_G0019686.1 mouse_genomes_project 11 112791305 112793515 - MGP_C57BL6NJ_P0033473 Limd2 protein_coding protein_coding MGP_C57BL6NJ_T0003323.1 MGP_C57BL6NJ_G0003071.1 mouse_genomes_project 11 56991644 57324607 + antisense antisense MGP_C57BL6NJ_T0009932.1 MGP_C57BL6NJ_G0008017.1 mouse_genomes_project 11 102526735 102526842 + Mir8103 miRNA miRNA MGP_C57BL6NJ_T0003329.1 MGP_C57BL6NJ_G0003077.1 mouse_genomes_project 11 60660527 60663111 + antisense antisense MGP_C57BL6NJ_T0003330.1 MGP_C57BL6NJ_G0003077.1 mouse_genomes_project 11 60660527 60663111 + antisense antisense MGP_C57BL6NJ_T0033016.1 MGP_C57BL6NJ_G0019595.1 mouse_genomes_project 11 107601425 107608911 - MGP_C57BL6NJ_P0033016 Vat1 protein_coding protein_coding MGP_C57BL6NJ_T0031705.1 MGP_C57BL6NJ_G0019233.1 mouse_genomes_project 11 87079468 87095684 + MGP_C57BL6NJ_P0031705 Slfn4 protein_coding protein_coding MGP_C57BL6NJ_T0031706.1 MGP_C57BL6NJ_G0019233.1 mouse_genomes_project 11 87079476 87095512 + MGP_C57BL6NJ_P0031706 Slfn4 protein_coding protein_coding MGP_C57BL6NJ_T0032639.1 MGP_C57BL6NJ_G0019465.1 mouse_genomes_project 11 104472765 104480167 - MGP_C57BL6NJ_P0032639 Nr1d1 protein_coding protein_coding MGP_C57BL6NJ_T0032640.1 MGP_C57BL6NJ_G0019465.1 mouse_genomes_project 11 104474180 104475260 - Nr1d1 protein_coding processed_transcript MGP_C57BL6NJ_T0017633.1 MGP_C57BL6NJ_G0015550.1 mouse_genomes_project 11 21400668 21404991 + Gm20456 processed_transcript processed_transcript MGP_C57BL6NJ_T0012774.1 MGP_C57BL6NJ_G0010819.1 mouse_genomes_project 11 6185295 6186192 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099327.1 MGP_C57BL6NJ_G0037389.1 mouse_genomes_project 11 103051564 103053848 - Gm11611 sense_intronic sense_intronic MGP_C57BL6NJ_T0009862.1 MGP_C57BL6NJ_G0007947.1 mouse_genomes_project 11 43421000 43421065 - Mir146 miRNA miRNA MGP_C57BL6NJ_T0032995.1 MGP_C57BL6NJ_G0019587.1 mouse_genomes_project 11 107431336 107440426 + MGP_C57BL6NJ_P0032995 Aoc3 protein_coding protein_coding MGP_C57BL6NJ_T0032996.1 MGP_C57BL6NJ_G0019587.1 mouse_genomes_project 11 107431800 107450227 + MGP_C57BL6NJ_P0032996 Aoc3 protein_coding protein_coding MGP_C57BL6NJ_T0032075.1 MGP_C57BL6NJ_G0019327.1 mouse_genomes_project 11 94052634 94292056 - MGP_C57BL6NJ_P0032075 protein_coding protein_coding MGP_C57BL6NJ_T0032076.1 MGP_C57BL6NJ_G0019327.1 mouse_genomes_project 11 94052733 94180241 - MGP_C57BL6NJ_P0032076 protein_coding protein_coding MGP_C57BL6NJ_T0034683.1 MGP_C57BL6NJ_G0019929.1 mouse_genomes_project 11 129462249 129464712 - MGP_C57BL6NJ_P0034683 Tex19.2 protein_coding protein_coding MGP_C57BL6NJ_T0032008.1 MGP_C57BL6NJ_G0019306.1 mouse_genomes_project 11 92207645 92218234 + MGP_C57BL6NJ_P0032008 Mks1 protein_coding protein_coding MGP_C57BL6NJ_T0032009.1 MGP_C57BL6NJ_G0019306.1 mouse_genomes_project 11 92207657 92213744 + Mks1 protein_coding retained_intron MGP_C57BL6NJ_T0032010.1 MGP_C57BL6NJ_G0019306.1 mouse_genomes_project 11 92208095 92213744 + Mks1 protein_coding retained_intron MGP_C57BL6NJ_T0032011.1 MGP_C57BL6NJ_G0019306.1 mouse_genomes_project 11 92210993 92211722 + Mks1 protein_coding retained_intron MGP_C57BL6NJ_T0032012.1 MGP_C57BL6NJ_G0019306.1 mouse_genomes_project 11 92216367 92217692 + Mks1 protein_coding retained_intron MGP_C57BL6NJ_T0101037.1 MGP_C57BL6NJ_G0039083.1 mouse_genomes_project 11 57536209 57536285 - Gm24253 snoRNA snoRNA MGP_C57BL6NJ_T0029640.1 MGP_C57BL6NJ_G0018723.1 mouse_genomes_project 11 56644814 56659148 - MGP_C57BL6NJ_P0029640 Atox1 protein_coding protein_coding MGP_C57BL6NJ_T0029641.1 MGP_C57BL6NJ_G0018723.1 mouse_genomes_project 11 56644817 56659106 - Atox1 protein_coding processed_transcript MGP_C57BL6NJ_T0033805.1 MGP_C57BL6NJ_G0019763.1 mouse_genomes_project 11 122680173 122691995 - MGP_C57BL6NJ_P0033805 Cd300e protein_coding protein_coding MGP_C57BL6NJ_T0029440.1 MGP_C57BL6NJ_G0018673.1 mouse_genomes_project 11 52988640 53006477 - MGP_C57BL6NJ_P0029440 Olfr1373 protein_coding protein_coding MGP_C57BL6NJ_T0011560.1 MGP_C57BL6NJ_G0009645.1 mouse_genomes_project 11 59393301 59393572 + Gm26025 misc_RNA misc_RNA MGP_C57BL6NJ_T0032153.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99358028 99393718 - MGP_C57BL6NJ_P0032153 Luc7l3 protein_coding protein_coding MGP_C57BL6NJ_T0032154.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99361199 99367200 - MGP_C57BL6NJ_P0032154 Luc7l3 protein_coding protein_coding MGP_C57BL6NJ_T0032155.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99361199 99393748 - MGP_C57BL6NJ_P0032155 Luc7l3 protein_coding protein_coding MGP_C57BL6NJ_T0032156.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99361277 99393748 - MGP_C57BL6NJ_P0032156 Luc7l3 protein_coding protein_coding MGP_C57BL6NJ_T0032157.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99361277 99393748 - MGP_C57BL6NJ_P0032157 Luc7l3 protein_coding protein_coding MGP_C57BL6NJ_T0032158.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99361467 99363362 - MGP_C57BL6NJ_P0032158 Luc7l3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032159.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99362912 99393655 - MGP_C57BL6NJ_P0032159 Luc7l3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032160.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99367139 99368351 - Luc7l3 protein_coding retained_intron MGP_C57BL6NJ_T0032161.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99367147 99369164 - Luc7l3 protein_coding processed_transcript MGP_C57BL6NJ_T0032162.1 MGP_C57BL6NJ_G0019346.1 mouse_genomes_project 11 99367188 99370364 - Luc7l3 protein_coding retained_intron MGP_C57BL6NJ_T0030738.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73255003 73313616 + MGP_C57BL6NJ_P0030738 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030739.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73255012 73313287 + MGP_C57BL6NJ_P0030739 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030740.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73255020 73313612 + MGP_C57BL6NJ_P0030740 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030741.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73255139 73313617 + MGP_C57BL6NJ_P0030741 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030742.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73255192 73312874 + MGP_C57BL6NJ_P0030742 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030743.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73291027 73297070 + Mink1 protein_coding processed_transcript MGP_C57BL6NJ_T0030744.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73294028 73313617 + MGP_C57BL6NJ_P0030744 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030745.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73296238 73304524 + MGP_C57BL6NJ_P0030745 Mink1 protein_coding protein_coding MGP_C57BL6NJ_T0030746.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73296261 73304179 + MGP_C57BL6NJ_P0030746 Mink1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030747.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73303800 73304873 + Mink1 protein_coding retained_intron MGP_C57BL6NJ_T0030748.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73304911 73305928 + Mink1 protein_coding retained_intron MGP_C57BL6NJ_T0030749.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73306837 73307849 + Mink1 protein_coding retained_intron MGP_C57BL6NJ_T0030750.1 MGP_C57BL6NJ_G0018994.1 mouse_genomes_project 11 73307190 73310141 + Mink1 protein_coding retained_intron MGP_C57BL6NJ_T0003378.1 MGP_C57BL6NJ_G0003116.1 mouse_genomes_project 11 80328427 80329387 - Gm12343 antisense antisense MGP_C57BL6NJ_T0003493.1 MGP_C57BL6NJ_G0003208.1 mouse_genomes_project 11 123684092 123689748 - Sap30bpos antisense antisense MGP_C57BL6NJ_T0032478.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103203746 103228587 + Mllt6 protein_coding processed_transcript MGP_C57BL6NJ_T0032479.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103203746 103231517 + MGP_C57BL6NJ_P0032479 Mllt6 protein_coding protein_coding MGP_C57BL6NJ_T0032480.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103203746 103231517 + MGP_C57BL6NJ_P0032480 Mllt6 protein_coding protein_coding MGP_C57BL6NJ_T0032481.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103205088 103219318 + Mllt6 protein_coding processed_transcript MGP_C57BL6NJ_T0032482.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103221821 103224154 + Mllt6 protein_coding processed_transcript MGP_C57BL6NJ_T0032483.1 MGP_C57BL6NJ_G0019428.1 mouse_genomes_project 11 103221821 103224154 + Mllt6 protein_coding processed_transcript MGP_C57BL6NJ_T0012865.1 MGP_C57BL6NJ_G0010910.1 mouse_genomes_project 11 32753695 32754227 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098969.1 MGP_C57BL6NJ_G0037033.1 mouse_genomes_project 11 94879875 94879994 - n-R5s72 rRNA rRNA MGP_C57BL6NJ_T0032562.1 MGP_C57BL6NJ_G0019447.1 mouse_genomes_project 11 103936261 103940495 - MGP_C57BL6NJ_P0032562 Neurod2 protein_coding protein_coding MGP_C57BL6NJ_T0011554.1 MGP_C57BL6NJ_G0009639.1 mouse_genomes_project 11 15597299 15597623 + Gm23959 misc_RNA misc_RNA MGP_C57BL6NJ_T0013082.1 MGP_C57BL6NJ_G0011127.1 mouse_genomes_project 11 123358778 123358847 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029605.1 MGP_C57BL6NJ_G0018713.1 mouse_genomes_project 11 56056014 56063138 + MGP_C57BL6NJ_P0029605 Gpx3 protein_coding protein_coding MGP_C57BL6NJ_T0029606.1 MGP_C57BL6NJ_G0018713.1 mouse_genomes_project 11 56056333 56063939 + MGP_C57BL6NJ_P0029606 Gpx3 protein_coding protein_coding MGP_C57BL6NJ_T0029607.1 MGP_C57BL6NJ_G0018713.1 mouse_genomes_project 11 56056487 56063096 + MGP_C57BL6NJ_P0029607 Gpx3 protein_coding protein_coding MGP_C57BL6NJ_T0028511.1 MGP_C57BL6NJ_G0018435.1 mouse_genomes_project 11 8682166 8833244 + MGP_C57BL6NJ_P0028511 Vwc2 protein_coding protein_coding MGP_C57BL6NJ_T0028512.1 MGP_C57BL6NJ_G0018435.1 mouse_genomes_project 11 8682687 8838649 + MGP_C57BL6NJ_P0028512 Vwc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028513.1 MGP_C57BL6NJ_G0018435.1 mouse_genomes_project 11 8683794 8836356 + MGP_C57BL6NJ_P0028513 Vwc2 protein_coding protein_coding MGP_C57BL6NJ_T0028514.1 MGP_C57BL6NJ_G0018435.1 mouse_genomes_project 11 8684428 8701053 + Vwc2 protein_coding processed_transcript MGP_C57BL6NJ_T0099747.1 MGP_C57BL6NJ_G0037793.1 mouse_genomes_project 11 36222446 36222552 + Gm22127 snRNA snRNA MGP_C57BL6NJ_T0003376.1 MGP_C57BL6NJ_G0003114.1 mouse_genomes_project 11 78138448 78141284 - Gm12333 antisense antisense MGP_C57BL6NJ_T0029995.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405324 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0029996.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405354 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0029997.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405324 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0029998.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405354 - MGP_C57BL6NJ_P0029998 Mapk7 protein_coding protein_coding MGP_C57BL6NJ_T0029999.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405324 - MGP_C57BL6NJ_P0029999 Mapk7 protein_coding protein_coding MGP_C57BL6NJ_T0030000.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63399869 63405354 - MGP_C57BL6NJ_P0030000 Mapk7 protein_coding protein_coding MGP_C57BL6NJ_T0030001.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63400516 63401996 - MGP_C57BL6NJ_P0030001 Mapk7 protein_coding protein_coding MGP_C57BL6NJ_T0030002.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402359 63404763 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030003.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402613 63405324 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030004.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402635 63405324 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030005.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402653 63405464 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030006.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402663 63405324 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030007.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402663 63405246 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0030008.1 MGP_C57BL6NJ_G0018832.1 mouse_genomes_project 11 63402699 63405246 - Mapk7 protein_coding processed_transcript MGP_C57BL6NJ_T0012876.1 MGP_C57BL6NJ_G0010921.1 mouse_genomes_project 11 41273956 41274500 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034099.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124134372 124210837 - MGP_C57BL6NJ_P0034099 Rnf157 protein_coding protein_coding MGP_C57BL6NJ_T0034100.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124134372 124157024 - MGP_C57BL6NJ_P0034100 Rnf157 protein_coding protein_coding MGP_C57BL6NJ_T0034101.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124134372 124210837 - MGP_C57BL6NJ_P0034101 Rnf157 protein_coding protein_coding MGP_C57BL6NJ_T0034102.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124136358 124145474 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034103.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124136425 124145948 - MGP_C57BL6NJ_P0034103 Rnf157 protein_coding protein_coding MGP_C57BL6NJ_T0034104.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124150763 124157448 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034105.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124152079 124153581 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034106.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124155323 124157250 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034107.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124157194 124157955 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034108.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124157831 124187572 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0034109.1 MGP_C57BL6NJ_G0019818.1 mouse_genomes_project 11 124199080 124210865 - Rnf157 protein_coding processed_transcript MGP_C57BL6NJ_T0030945.1 MGP_C57BL6NJ_G0019034.1 mouse_genomes_project 11 75459513 75551321 + MGP_C57BL6NJ_P0030945 Ube2g1 protein_coding protein_coding MGP_C57BL6NJ_T0030946.1 MGP_C57BL6NJ_G0019034.1 mouse_genomes_project 11 75459513 75551321 + MGP_C57BL6NJ_P0030946 Ube2g1 protein_coding protein_coding MGP_C57BL6NJ_T0030947.1 MGP_C57BL6NJ_G0019034.1 mouse_genomes_project 11 75459549 75544980 + Ube2g1 protein_coding retained_intron MGP_C57BL6NJ_T0029990.1 MGP_C57BL6NJ_G0018831.1 mouse_genomes_project 11 63393143 63399307 + MGP_C57BL6NJ_P0029990 Mfap4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029991.1 MGP_C57BL6NJ_G0018831.1 mouse_genomes_project 11 63393507 63399958 + MGP_C57BL6NJ_P0029991 Mfap4 protein_coding protein_coding MGP_C57BL6NJ_T0029992.1 MGP_C57BL6NJ_G0018831.1 mouse_genomes_project 11 63393537 63399133 + MGP_C57BL6NJ_P0029992 Mfap4 protein_coding protein_coding MGP_C57BL6NJ_T0029993.1 MGP_C57BL6NJ_G0018831.1 mouse_genomes_project 11 63393567 63395029 + Mfap4 protein_coding processed_transcript MGP_C57BL6NJ_T0029994.1 MGP_C57BL6NJ_G0018831.1 mouse_genomes_project 11 63393592 63399958 + Mfap4 protein_coding processed_transcript MGP_C57BL6NJ_T0009842.1 MGP_C57BL6NJ_G0007927.1 mouse_genomes_project 11 1152346 1152429 + Mir3060 miRNA miRNA MGP_C57BL6NJ_T0028574.1 MGP_C57BL6NJ_G0018446.1 mouse_genomes_project 11 14948222 14951295 + MGP_C57BL6NJ_P0028574 Fbxo48 protein_coding protein_coding MGP_C57BL6NJ_T0028575.1 MGP_C57BL6NJ_G0018446.1 mouse_genomes_project 11 14948257 14951620 + MGP_C57BL6NJ_P0028575 Fbxo48 protein_coding protein_coding MGP_C57BL6NJ_T0034555.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882234 128888833 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034556.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882234 128889104 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034557.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882234 128888878 - MGP_C57BL6NJ_P0034557 Sirt7 protein_coding protein_coding MGP_C57BL6NJ_T0034558.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882236 128888863 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034559.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882250 128888884 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034560.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882282 128884841 - MGP_C57BL6NJ_P0034560 Sirt7 protein_coding protein_coding MGP_C57BL6NJ_T0034561.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128882631 128883232 - Sirt7 protein_coding processed_transcript MGP_C57BL6NJ_T0034562.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128884862 128888854 - Sirt7 protein_coding processed_transcript MGP_C57BL6NJ_T0034563.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128885853 128886666 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034564.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128887143 128888856 - Sirt7 protein_coding retained_intron MGP_C57BL6NJ_T0034565.1 MGP_C57BL6NJ_G0019907.1 mouse_genomes_project 11 128887853 128888848 - MGP_C57BL6NJ_P0034565 Sirt7 protein_coding protein_coding MGP_C57BL6NJ_T0003317.1 MGP_C57BL6NJ_G0003066.1 mouse_genomes_project 11 55869132 55875706 + Gm12227 antisense antisense MGP_C57BL6NJ_T0003485.1 MGP_C57BL6NJ_G0003201.1 mouse_genomes_project 11 116777161 116779211 + Gm11684 antisense antisense MGP_C57BL6NJ_T0028724.1 MGP_C57BL6NJ_G0018483.1 mouse_genomes_project 11 22273919 22294919 - MGP_C57BL6NJ_P0028724 Pex13 protein_coding protein_coding MGP_C57BL6NJ_T0028725.1 MGP_C57BL6NJ_G0018483.1 mouse_genomes_project 11 22276896 22294812 - MGP_C57BL6NJ_P0028725 Pex13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028726.1 MGP_C57BL6NJ_G0018483.1 mouse_genomes_project 11 22283267 22294802 - Pex13 protein_coding processed_transcript MGP_C57BL6NJ_T0028727.1 MGP_C57BL6NJ_G0018483.1 mouse_genomes_project 11 22283520 22294633 - Pex13 protein_coding processed_transcript MGP_C57BL6NJ_T0003341.1 MGP_C57BL6NJ_G0003086.1 mouse_genomes_project 11 64485926 64507436 + Gm12278 antisense antisense MGP_C57BL6NJ_T0034650.1 MGP_C57BL6NJ_G0019923.1 mouse_genomes_project 11 129133588 129251379 - MGP_C57BL6NJ_P0034650 Ccdc57 protein_coding protein_coding MGP_C57BL6NJ_T0034651.1 MGP_C57BL6NJ_G0019923.1 mouse_genomes_project 11 129133601 129187793 - Ccdc57 protein_coding processed_transcript MGP_C57BL6NJ_T0034652.1 MGP_C57BL6NJ_G0019923.1 mouse_genomes_project 11 129187913 129199850 - Ccdc57 protein_coding processed_transcript MGP_C57BL6NJ_T0013069.1 MGP_C57BL6NJ_G0011114.1 mouse_genomes_project 11 116102689 116103697 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032754.1 MGP_C57BL6NJ_G0019530.1 mouse_genomes_project 11 106007163 106011196 - MGP_C57BL6NJ_P0032754 Krt35 protein_coding protein_coding MGP_C57BL6NJ_T0032755.1 MGP_C57BL6NJ_G0019530.1 mouse_genomes_project 11 106007165 106011212 - Krt35 protein_coding retained_intron MGP_C57BL6NJ_T0031972.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91924573 91948987 + MGP_C57BL6NJ_P0031972 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0031973.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91924630 91948987 + MGP_C57BL6NJ_P0031973 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0031974.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91924637 91931799 + MGP_C57BL6NJ_P0031974 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0031975.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91924875 91930585 + MGP_C57BL6NJ_P0031975 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0031976.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91925308 91947857 + MGP_C57BL6NJ_P0031976 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0031977.1 MGP_C57BL6NJ_G0019299.1 mouse_genomes_project 11 91928053 91933931 + MGP_C57BL6NJ_P0031977 Mtmr4 protein_coding protein_coding MGP_C57BL6NJ_T0003328.1 MGP_C57BL6NJ_G0003076.1 mouse_genomes_project 11 60558159 60559938 + Gm12257 antisense antisense MGP_C57BL6NJ_T0034277.1 MGP_C57BL6NJ_G0019852.1 mouse_genomes_project 11 126025946 126069117 + MGP_C57BL6NJ_P0034277 Pgs1 protein_coding protein_coding MGP_C57BL6NJ_T0034278.1 MGP_C57BL6NJ_G0019852.1 mouse_genomes_project 11 126026539 126069117 + MGP_C57BL6NJ_P0034278 Pgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034279.1 MGP_C57BL6NJ_G0019852.1 mouse_genomes_project 11 126042915 126069031 + MGP_C57BL6NJ_P0034279 Pgs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034280.1 MGP_C57BL6NJ_G0019852.1 mouse_genomes_project 11 126056271 126069117 + Pgs1 protein_coding retained_intron MGP_C57BL6NJ_T0033285.1 MGP_C57BL6NJ_G0019643.1 mouse_genomes_project 11 109317685 109343887 - MGP_C57BL6NJ_P0033285 Dcakd protein_coding protein_coding MGP_C57BL6NJ_T0033286.1 MGP_C57BL6NJ_G0019643.1 mouse_genomes_project 11 109317687 109321187 - Dcakd protein_coding retained_intron MGP_C57BL6NJ_T0033287.1 MGP_C57BL6NJ_G0019643.1 mouse_genomes_project 11 109323282 109361965 - MGP_C57BL6NJ_P0033287 Dcakd protein_coding protein_coding MGP_C57BL6NJ_T0033288.1 MGP_C57BL6NJ_G0019643.1 mouse_genomes_project 11 109360648 109361924 - Dcakd protein_coding retained_intron MGP_C57BL6NJ_T0033289.1 MGP_C57BL6NJ_G0019643.1 mouse_genomes_project 11 109360922 109361994 - Dcakd protein_coding processed_transcript MGP_C57BL6NJ_T0034124.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124347359 124353092 + MGP_C57BL6NJ_P0034124 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034125.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124347555 124352135 + MGP_C57BL6NJ_P0034125 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034126.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124347596 124351719 + Sphk1 protein_coding retained_intron MGP_C57BL6NJ_T0034127.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348178 124353092 + MGP_C57BL6NJ_P0034127 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034128.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348345 124353105 + MGP_C57BL6NJ_P0034128 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034129.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348878 124353109 + MGP_C57BL6NJ_P0034129 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034130.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348885 124353103 + Sphk1 protein_coding retained_intron MGP_C57BL6NJ_T0034131.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348888 124352147 + MGP_C57BL6NJ_P0034131 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034132.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348891 124351776 + MGP_C57BL6NJ_P0034132 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034133.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124348907 124353109 + MGP_C57BL6NJ_P0034133 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034134.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124349359 124353092 + MGP_C57BL6NJ_P0034134 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034135.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124349685 124352071 + Sphk1 protein_coding processed_transcript MGP_C57BL6NJ_T0034136.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124349702 124352430 + MGP_C57BL6NJ_P0034136 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034137.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124350009 124352133 + MGP_C57BL6NJ_P0034137 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0034138.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124350594 124351723 + Sphk1 protein_coding retained_intron MGP_C57BL6NJ_T0034139.1 MGP_C57BL6NJ_G0019822.1 mouse_genomes_project 11 124351174 124353105 + MGP_C57BL6NJ_P0034139 Sphk1 protein_coding protein_coding MGP_C57BL6NJ_T0031407.1 MGP_C57BL6NJ_G0019155.1 mouse_genomes_project 11 81611004 81618856 - Traf4 protein_coding retained_intron MGP_C57BL6NJ_T0031408.1 MGP_C57BL6NJ_G0019155.1 mouse_genomes_project 11 81611905 81618856 - MGP_C57BL6NJ_P0031408 Traf4 protein_coding protein_coding MGP_C57BL6NJ_T0031409.1 MGP_C57BL6NJ_G0019155.1 mouse_genomes_project 11 81612421 81618707 - MGP_C57BL6NJ_P0031409 Traf4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031410.1 MGP_C57BL6NJ_G0019155.1 mouse_genomes_project 11 81613298 81618783 - Traf4 protein_coding retained_intron MGP_C57BL6NJ_T0029075.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43748881 43773926 + MGP_C57BL6NJ_P0029075 Pwwp2a protein_coding protein_coding MGP_C57BL6NJ_T0029076.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43748941 43787070 + MGP_C57BL6NJ_P0029076 Pwwp2a protein_coding protein_coding MGP_C57BL6NJ_T0029077.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43749363 43750841 + Pwwp2a protein_coding processed_transcript MGP_C57BL6NJ_T0029078.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43750931 43773926 + MGP_C57BL6NJ_P0029078 Pwwp2a protein_coding protein_coding MGP_C57BL6NJ_T0029079.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43771977 43788150 + Pwwp2a protein_coding processed_transcript MGP_C57BL6NJ_T0029080.1 MGP_C57BL6NJ_G0018572.1 mouse_genomes_project 11 43784314 43787491 + Pwwp2a protein_coding processed_transcript MGP_C57BL6NJ_T0034378.1 MGP_C57BL6NJ_G0019873.1 mouse_genomes_project 11 127511035 127540225 + MGP_C57BL6NJ_P0034378 Slc26a11 protein_coding protein_coding MGP_C57BL6NJ_T0034379.1 MGP_C57BL6NJ_G0019873.1 mouse_genomes_project 11 127511066 127520339 + Slc26a11 protein_coding processed_transcript MGP_C57BL6NJ_T0034380.1 MGP_C57BL6NJ_G0019873.1 mouse_genomes_project 11 127511071 127529017 + Slc26a11 protein_coding processed_transcript MGP_C57BL6NJ_T0034381.1 MGP_C57BL6NJ_G0019873.1 mouse_genomes_project 11 127520732 127540195 + Slc26a11 protein_coding processed_transcript MGP_C57BL6NJ_T0028301.1 MGP_C57BL6NJ_G0018385.1 mouse_genomes_project 11 2013084 2022395 - MGP_C57BL6NJ_P0028301 Nefh protein_coding protein_coding MGP_C57BL6NJ_T0030451.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72210904 72231150 + MGP_C57BL6NJ_P0030451 Fxr2 protein_coding protein_coding MGP_C57BL6NJ_T0030452.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72218029 72219288 + Fxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0030453.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72221409 72227654 + Fxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0030454.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72227457 72228934 + Fxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0030455.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72228981 72229575 + Fxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0030456.1 MGP_C57BL6NJ_G0018933.1 mouse_genomes_project 11 72230172 72230776 + Fxr2 protein_coding processed_transcript MGP_C57BL6NJ_T0099775.1 MGP_C57BL6NJ_G0037821.1 mouse_genomes_project 11 86367652 86367759 - Gm24612 snRNA snRNA MGP_C57BL6NJ_T0006345.1 MGP_C57BL6NJ_G0005295.1 mouse_genomes_project 11 19974879 19980226 - lincRNA lincRNA MGP_C57BL6NJ_T0031472.1 MGP_C57BL6NJ_G0019167.1 mouse_genomes_project 11 81797239 81816006 + MGP_C57BL6NJ_P0031472 Pigs protein_coding protein_coding MGP_C57BL6NJ_T0009924.1 MGP_C57BL6NJ_G0008009.1 mouse_genomes_project 11 92104767 92104882 - Mir142b miRNA miRNA MGP_C57BL6NJ_T0033073.1 MGP_C57BL6NJ_G0019604.1 mouse_genomes_project 11 108084645 108102347 - MGP_C57BL6NJ_P0033073 Meox1 protein_coding protein_coding MGP_C57BL6NJ_T0028877.1 MGP_C57BL6NJ_G0018517.1 mouse_genomes_project 11 31029350 31092296 + MGP_C57BL6NJ_P0028877 Cpeb4 protein_coding protein_coding MGP_C57BL6NJ_T0028878.1 MGP_C57BL6NJ_G0018517.1 mouse_genomes_project 11 31029365 31096353 + MGP_C57BL6NJ_P0028878 Cpeb4 protein_coding protein_coding MGP_C57BL6NJ_T0028879.1 MGP_C57BL6NJ_G0018517.1 mouse_genomes_project 11 31030414 31096353 + MGP_C57BL6NJ_P0028879 Cpeb4 protein_coding protein_coding MGP_C57BL6NJ_T0033480.1 MGP_C57BL6NJ_G0019689.1 mouse_genomes_project 11 112833374 112855337 - MGP_C57BL6NJ_P0033480 Ccdc47 protein_coding protein_coding MGP_C57BL6NJ_T0033481.1 MGP_C57BL6NJ_G0019689.1 mouse_genomes_project 11 112839418 112843068 - MGP_C57BL6NJ_P0033481 Ccdc47 protein_coding protein_coding MGP_C57BL6NJ_T0033482.1 MGP_C57BL6NJ_G0019689.1 mouse_genomes_project 11 112840257 112844075 - MGP_C57BL6NJ_P0033482 Ccdc47 protein_coding protein_coding MGP_C57BL6NJ_T0033483.1 MGP_C57BL6NJ_G0019689.1 mouse_genomes_project 11 112840644 112841545 - MGP_C57BL6NJ_P0033483 Ccdc47 protein_coding protein_coding MGP_C57BL6NJ_T0033484.1 MGP_C57BL6NJ_G0019689.1 mouse_genomes_project 11 112842932 112844182 - Ccdc47 protein_coding processed_transcript MGP_C57BL6NJ_T0003370.1 MGP_C57BL6NJ_G0003110.1 mouse_genomes_project 11 71995641 72000770 + Dnah2os antisense antisense MGP_C57BL6NJ_T0011550.1 MGP_C57BL6NJ_G0009635.1 mouse_genomes_project 11 608237 608414 - Gm27624 misc_RNA misc_RNA MGP_C57BL6NJ_T0098805.1 MGP_C57BL6NJ_G0036869.1 mouse_genomes_project 11 44759185 44759602 + pseudogene pseudogene MGP_C57BL6NJ_T0029644.1 MGP_C57BL6NJ_G0018725.1 mouse_genomes_project 11 56715387 56819885 - MGP_C57BL6NJ_P0029644 Glra1 protein_coding protein_coding MGP_C57BL6NJ_T0029645.1 MGP_C57BL6NJ_G0018725.1 mouse_genomes_project 11 56715962 56819797 - MGP_C57BL6NJ_P0029645 Glra1 protein_coding protein_coding MGP_C57BL6NJ_T0012866.1 MGP_C57BL6NJ_G0010911.1 mouse_genomes_project 11 34727630 34728102 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102736.1 MGP_C57BL6NJ_G0040531.1 mouse_genomes_project 11 54993044 54993216 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0029238.1 MGP_C57BL6NJ_G0018621.1 mouse_genomes_project 11 50046099 50046771 + MGP_C57BL6NJ_P0029238 Olfr1385 protein_coding protein_coding MGP_C57BL6NJ_T0034152.1 MGP_C57BL6NJ_G0019826.1 mouse_genomes_project 11 124485044 124494561 - MGP_C57BL6NJ_P0034152 Cygb protein_coding protein_coding MGP_C57BL6NJ_T0006408.1 MGP_C57BL6NJ_G0005349.1 mouse_genomes_project 11 61645248 61655496 + Gm12714 lincRNA lincRNA MGP_C57BL6NJ_T0034346.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127355289 127358419 + Ccdc40 protein_coding processed_transcript MGP_C57BL6NJ_T0034347.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127355295 127358335 + Ccdc40 protein_coding processed_transcript MGP_C57BL6NJ_T0034348.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127355819 127407189 + MGP_C57BL6NJ_P0034348 Ccdc40 protein_coding protein_coding MGP_C57BL6NJ_T0034349.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127355824 127408747 + MGP_C57BL6NJ_P0034349 Ccdc40 protein_coding protein_coding MGP_C57BL6NJ_T0034350.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127366190 127396117 + Ccdc40 protein_coding retained_intron MGP_C57BL6NJ_T0034351.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127397842 127408669 + Ccdc40 protein_coding retained_intron MGP_C57BL6NJ_T0034352.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127403215 127409426 + Ccdc40 protein_coding processed_transcript MGP_C57BL6NJ_T0034353.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127404054 127407409 + Ccdc40 protein_coding retained_intron MGP_C57BL6NJ_T0034354.1 MGP_C57BL6NJ_G0019868.1 mouse_genomes_project 11 127407160 127408539 + Ccdc40 protein_coding retained_intron MGP_C57BL6NJ_T0013056.1 MGP_C57BL6NJ_G0011101.1 mouse_genomes_project 11 111465141 111465730 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009879.1 MGP_C57BL6NJ_G0007964.1 mouse_genomes_project 11 61966155 61966235 - Mir6921 miRNA miRNA MGP_C57BL6NJ_T0030731.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73230123 73231243 + MGP_C57BL6NJ_P0030731 Pld2 protein_coding protein_coding MGP_C57BL6NJ_T0030732.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73230365 73250240 + MGP_C57BL6NJ_P0030732 Pld2 protein_coding protein_coding MGP_C57BL6NJ_T0030733.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73230402 73250240 + MGP_C57BL6NJ_P0030733 Pld2 protein_coding protein_coding MGP_C57BL6NJ_T0030734.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73230415 73236458 + MGP_C57BL6NJ_P0030734 Pld2 protein_coding protein_coding MGP_C57BL6NJ_T0030735.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73244148 73249233 + Pld2 protein_coding retained_intron MGP_C57BL6NJ_T0030736.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73247767 73249357 + MGP_C57BL6NJ_P0030736 Pld2 protein_coding protein_coding MGP_C57BL6NJ_T0030737.1 MGP_C57BL6NJ_G0018993.1 mouse_genomes_project 11 73247932 73249607 + Pld2 protein_coding retained_intron MGP_C57BL6NJ_T0032735.1 MGP_C57BL6NJ_G0019513.1 mouse_genomes_project 11 105665960 105667225 - MGP_C57BL6NJ_P0032735 2300003K06Rik protein_coding protein_coding MGP_C57BL6NJ_T0017752.1 MGP_C57BL6NJ_G0015615.1 mouse_genomes_project 11 126564369 126567358 - Gm11748 processed_transcript processed_transcript MGP_C57BL6NJ_T0012902.1 MGP_C57BL6NJ_G0010947.1 mouse_genomes_project 11 51650258 51653606 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006506.1 MGP_C57BL6NJ_G0005419.1 mouse_genomes_project 11 113727417 113728450 - Gm11707 lincRNA lincRNA MGP_C57BL6NJ_T0101083.1 MGP_C57BL6NJ_G0039129.1 mouse_genomes_project 11 113174711 113174781 + Snord104 snoRNA snoRNA MGP_C57BL6NJ_T0009855.1 MGP_C57BL6NJ_G0007940.1 mouse_genomes_project 11 27715169 27715238 - Mir216c miRNA miRNA MGP_C57BL6NJ_T0013062.1 MGP_C57BL6NJ_G0011107.1 mouse_genomes_project 11 113770818 113771650 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012786.1 MGP_C57BL6NJ_G0010831.1 mouse_genomes_project 11 12566469 12567066 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033592.1 MGP_C57BL6NJ_G0019712.1 mouse_genomes_project 11 114305134 114325838 + MGP_C57BL6NJ_P0033592 Psmd12 protein_coding protein_coding MGP_C57BL6NJ_T0033593.1 MGP_C57BL6NJ_G0019712.1 mouse_genomes_project 11 114305178 114332027 + MGP_C57BL6NJ_P0033593 Psmd12 protein_coding protein_coding MGP_C57BL6NJ_T0033594.1 MGP_C57BL6NJ_G0019712.1 mouse_genomes_project 11 114305227 114325408 + MGP_C57BL6NJ_P0033594 Psmd12 protein_coding protein_coding MGP_C57BL6NJ_T0009920.1 MGP_C57BL6NJ_G0008005.1 mouse_genomes_project 11 88977575 88977642 + Gm23564 miRNA miRNA MGP_C57BL6NJ_T0033692.1 MGP_C57BL6NJ_G0019734.1 mouse_genomes_project 11 117131217 117200886 - MGP_C57BL6NJ_P0033692 Abca9 protein_coding protein_coding MGP_C57BL6NJ_T0033693.1 MGP_C57BL6NJ_G0019734.1 mouse_genomes_project 11 117186584 117200745 - Abca9 protein_coding processed_transcript MGP_C57BL6NJ_T0033119.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108415818 108422673 + MGP_C57BL6NJ_P0033119 G6pc3 protein_coding protein_coding MGP_C57BL6NJ_T0033120.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108415867 108422673 + MGP_C57BL6NJ_P0033120 G6pc3 protein_coding protein_coding MGP_C57BL6NJ_T0033121.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108415953 108420733 + G6pc3 protein_coding processed_transcript MGP_C57BL6NJ_T0033122.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108416019 108421792 + G6pc3 protein_coding processed_transcript MGP_C57BL6NJ_T0033123.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108420400 108422244 + G6pc3 protein_coding processed_transcript MGP_C57BL6NJ_T0033124.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108420610 108422190 + G6pc3 protein_coding processed_transcript MGP_C57BL6NJ_T0033125.1 MGP_C57BL6NJ_G0019616.1 mouse_genomes_project 11 108420616 108422343 + G6pc3 protein_coding processed_transcript MGP_C57BL6NJ_T0003469.1 MGP_C57BL6NJ_G0003189.1 mouse_genomes_project 11 113797456 113797683 + antisense antisense MGP_C57BL6NJ_T0029621.1 MGP_C57BL6NJ_G0018717.1 mouse_genomes_project 11 56262472 56277362 + MGP_C57BL6NJ_P0029621 Gm2a protein_coding protein_coding MGP_C57BL6NJ_T0006496.1 MGP_C57BL6NJ_G0005411.1 mouse_genomes_project 11 103457621 103466821 + Gm11630 lincRNA lincRNA MGP_C57BL6NJ_T0099801.1 MGP_C57BL6NJ_G0037847.1 mouse_genomes_project 11 111645252 111645357 + Gm25362 snRNA snRNA MGP_C57BL6NJ_T0029562.1 MGP_C57BL6NJ_G0018705.1 mouse_genomes_project 11 55388106 55390081 - MGP_C57BL6NJ_P0029562 Il3 protein_coding protein_coding MGP_C57BL6NJ_T0032005.1 MGP_C57BL6NJ_G0019305.1 mouse_genomes_project 11 92155799 92177700 - MGP_C57BL6NJ_P0032005 Lpo protein_coding protein_coding MGP_C57BL6NJ_T0032006.1 MGP_C57BL6NJ_G0019305.1 mouse_genomes_project 11 92168217 92169154 - Lpo protein_coding retained_intron MGP_C57BL6NJ_T0032007.1 MGP_C57BL6NJ_G0019305.1 mouse_genomes_project 11 92169382 92180812 - MGP_C57BL6NJ_P0032007 Lpo protein_coding protein_coding MGP_C57BL6NJ_T0029408.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52490515 52562710 - MGP_C57BL6NJ_P0029408 Sec24a protein_coding protein_coding MGP_C57BL6NJ_T0029409.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52493228 52562303 - MGP_C57BL6NJ_P0029409 Sec24a protein_coding protein_coding MGP_C57BL6NJ_T0029410.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52524328 52562523 - MGP_C57BL6NJ_P0029410 Sec24a protein_coding protein_coding MGP_C57BL6NJ_T0029411.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52524328 52562530 - MGP_C57BL6NJ_P0029411 Sec24a protein_coding protein_coding MGP_C57BL6NJ_T0029412.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52531674 52563253 - Sec24a protein_coding retained_intron MGP_C57BL6NJ_T0029413.1 MGP_C57BL6NJ_G0018665.1 mouse_genomes_project 11 52544420 52569636 - Sec24a protein_coding retained_intron MGP_C57BL6NJ_T0032726.1 MGP_C57BL6NJ_G0019504.1 mouse_genomes_project 11 105522690 105522843 - MGP_C57BL6NJ_P0032726 Gm14190 protein_coding protein_coding MGP_C57BL6NJ_T0032863.1 MGP_C57BL6NJ_G0019560.1 mouse_genomes_project 11 106742452 106744312 - MGP_C57BL6NJ_P0032863 Hcrt protein_coding protein_coding MGP_C57BL6NJ_T0032864.1 MGP_C57BL6NJ_G0019560.1 mouse_genomes_project 11 106743074 106744315 - MGP_C57BL6NJ_P0032864 Hcrt protein_coding protein_coding MGP_C57BL6NJ_T0029188.1 MGP_C57BL6NJ_G0018604.1 mouse_genomes_project 11 49415165 49428065 - protein_coding processed_transcript MGP_C57BL6NJ_T0032797.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106390289 106410871 - MGP_C57BL6NJ_P0032797 Nt5c3b protein_coding protein_coding MGP_C57BL6NJ_T0032798.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106390289 106414085 - MGP_C57BL6NJ_P0032798 Nt5c3b protein_coding protein_coding MGP_C57BL6NJ_T0032800.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106397329 106410837 - MGP_C57BL6NJ_P0032800 Nt5c3b protein_coding protein_coding MGP_C57BL6NJ_T0032801.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106397832 106399495 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032802.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106402728 106410698 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032803.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106402765 106410855 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032804.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106403515 106410798 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032805.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106408073 106410711 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032806.1 MGP_C57BL6NJ_G0019546.1 mouse_genomes_project 11 106409334 106410709 - Nt5c3b protein_coding processed_transcript MGP_C57BL6NJ_T0032835.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106599766 106607296 + MGP_C57BL6NJ_P0032835 Nkiras2 protein_coding protein_coding MGP_C57BL6NJ_T0032836.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106600806 106606913 + MGP_C57BL6NJ_P0032836 Nkiras2 protein_coding protein_coding MGP_C57BL6NJ_T0032837.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106603398 106608104 + MGP_C57BL6NJ_P0032837 Nkiras2 protein_coding protein_coding MGP_C57BL6NJ_T0032838.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106603442 106605375 + Nkiras2 protein_coding processed_transcript MGP_C57BL6NJ_T0032839.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106603470 106607083 + Nkiras2 protein_coding processed_transcript MGP_C57BL6NJ_T0032840.1 MGP_C57BL6NJ_G0019553.1 mouse_genomes_project 11 106603533 106606614 + MGP_C57BL6NJ_P0032840 Nkiras2 protein_coding protein_coding MGP_C57BL6NJ_T0099329.1 MGP_C57BL6NJ_G0037391.1 mouse_genomes_project 11 115253630 115254692 + Gm11656 sense_intronic sense_intronic MGP_C57BL6NJ_T0099330.1 MGP_C57BL6NJ_G0037391.1 mouse_genomes_project 11 115253646 115256825 + Gm11656 sense_intronic sense_intronic MGP_C57BL6NJ_T0031013.1 MGP_C57BL6NJ_G0019052.1 mouse_genomes_project 11 76265653 76280879 + MGP_C57BL6NJ_P0031013 Spata22 protein_coding protein_coding MGP_C57BL6NJ_T0031014.1 MGP_C57BL6NJ_G0019052.1 mouse_genomes_project 11 76265653 76304384 + MGP_C57BL6NJ_P0031014 Spata22 protein_coding protein_coding MGP_C57BL6NJ_T0099738.1 MGP_C57BL6NJ_G0037784.1 mouse_genomes_project 11 16965903 16966072 - Gm25426 snRNA snRNA MGP_C57BL6NJ_T0028779.1 MGP_C57BL6NJ_G0018496.1 mouse_genomes_project 11 28097334 28128129 + Pnpt1 protein_coding processed_transcript MGP_C57BL6NJ_T0028780.1 MGP_C57BL6NJ_G0018496.1 mouse_genomes_project 11 28097338 28102154 + Pnpt1 protein_coding processed_transcript MGP_C57BL6NJ_T0028781.1 MGP_C57BL6NJ_G0018496.1 mouse_genomes_project 11 28097338 28128277 + MGP_C57BL6NJ_P0028781 Pnpt1 protein_coding protein_coding MGP_C57BL6NJ_T0028782.1 MGP_C57BL6NJ_G0018496.1 mouse_genomes_project 11 28104789 28112073 + Pnpt1 protein_coding processed_transcript MGP_C57BL6NJ_T0012889.1 MGP_C57BL6NJ_G0010934.1 mouse_genomes_project 11 48984026 48985298 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006455.1 MGP_C57BL6NJ_G0005385.1 mouse_genomes_project 11 86408415 86411372 + Gm11426 lincRNA lincRNA MGP_C57BL6NJ_T0099319.1 MGP_C57BL6NJ_G0037382.1 mouse_genomes_project 11 274572 275911 - Gm11948 sense_intronic sense_intronic MGP_C57BL6NJ_T0012785.1 MGP_C57BL6NJ_G0010830.1 mouse_genomes_project 11 12428089 12428638 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034577.1 MGP_C57BL6NJ_G0019910.1 mouse_genomes_project 11 128909730 128911858 - MGP_C57BL6NJ_P0034577 Myadml2 protein_coding protein_coding MGP_C57BL6NJ_T0034578.1 MGP_C57BL6NJ_G0019910.1 mouse_genomes_project 11 128909731 128910782 - Myadml2 protein_coding processed_transcript MGP_C57BL6NJ_T0009962.1 MGP_C57BL6NJ_G0008047.1 mouse_genomes_project 11 124993038 124993148 + Mir6516 miRNA miRNA MGP_C57BL6NJ_T0032999.1 MGP_C57BL6NJ_G0019590.1 mouse_genomes_project 11 107540715 107553134 - MGP_C57BL6NJ_P0032999 Aarsd1 protein_coding protein_coding MGP_C57BL6NJ_T0033001.1 MGP_C57BL6NJ_G0019590.1 mouse_genomes_project 11 107544730 107552903 - Aarsd1 protein_coding processed_transcript MGP_C57BL6NJ_T0033002.1 MGP_C57BL6NJ_G0019590.1 mouse_genomes_project 11 107545331 107552901 - Aarsd1 protein_coding retained_intron MGP_C57BL6NJ_T0033003.1 MGP_C57BL6NJ_G0019590.1 mouse_genomes_project 11 107549232 107550049 - Aarsd1 protein_coding retained_intron MGP_C57BL6NJ_T0033004.1 MGP_C57BL6NJ_G0019590.1 mouse_genomes_project 11 107552266 107552925 - Aarsd1 protein_coding retained_intron MGP_C57BL6NJ_T0017635.1 MGP_C57BL6NJ_G0015552.1 mouse_genomes_project 11 21650331 21661723 + processed_transcript processed_transcript MGP_C57BL6NJ_T0030301.1 MGP_C57BL6NJ_G0018900.1 mouse_genomes_project 11 71415986 71422587 - MGP_C57BL6NJ_P0030301 Odf4 protein_coding protein_coding MGP_C57BL6NJ_T0030302.1 MGP_C57BL6NJ_G0018900.1 mouse_genomes_project 11 71415987 71422619 - MGP_C57BL6NJ_P0030302 Odf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030303.1 MGP_C57BL6NJ_G0018900.1 mouse_genomes_project 11 71416114 71422354 - MGP_C57BL6NJ_P0030303 Odf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030304.1 MGP_C57BL6NJ_G0018900.1 mouse_genomes_project 11 71416970 71422612 - MGP_C57BL6NJ_P0030304 Odf4 protein_coding protein_coding MGP_C57BL6NJ_T0029580.1 MGP_C57BL6NJ_G0018708.1 mouse_genomes_project 11 55565815 55656083 + MGP_C57BL6NJ_P0029580 Fnip1 protein_coding protein_coding MGP_C57BL6NJ_T0029581.1 MGP_C57BL6NJ_G0018708.1 mouse_genomes_project 11 55596013 55634975 + MGP_C57BL6NJ_P0029581 Fnip1 protein_coding protein_coding MGP_C57BL6NJ_T0032713.1 MGP_C57BL6NJ_G0019492.1 mouse_genomes_project 11 105373769 105374373 - MGP_C57BL6NJ_P0032713 Krtap3-1 protein_coding protein_coding MGP_C57BL6NJ_T0032717.1 MGP_C57BL6NJ_G0019496.1 mouse_genomes_project 11 105406483 105407242 - MGP_C57BL6NJ_P0032717 Krtap9-3 protein_coding protein_coding MGP_C57BL6NJ_T0031708.1 MGP_C57BL6NJ_G0019235.1 mouse_genomes_project 11 87191844 87203882 - MGP_C57BL6NJ_P0031708 Slfn14 protein_coding protein_coding MGP_C57BL6NJ_T0033616.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301117 115762051 + MGP_C57BL6NJ_P0033616 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033617.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301191 115762050 + MGP_C57BL6NJ_P0033617 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033618.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301202 115351142 + Cep112 protein_coding retained_intron MGP_C57BL6NJ_T0033619.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301216 115316261 + MGP_C57BL6NJ_P0033619 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033620.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301386 115410420 + MGP_C57BL6NJ_P0033620 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033621.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301429 115762051 + MGP_C57BL6NJ_P0033621 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033622.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115301537 115761695 + MGP_C57BL6NJ_P0033622 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033623.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115378360 115761786 + MGP_C57BL6NJ_P0033623 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033624.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115410410 115451145 + Cep112 protein_coding retained_intron MGP_C57BL6NJ_T0033625.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115466639 115654142 + MGP_C57BL6NJ_P0033625 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033626.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115484830 115553968 + Cep112 protein_coding processed_transcript MGP_C57BL6NJ_T0033627.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115524937 115761689 + Cep112 protein_coding processed_transcript MGP_C57BL6NJ_T0033628.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115528822 115757302 + Cep112 protein_coding processed_transcript MGP_C57BL6NJ_T0033629.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115572070 115761785 + MGP_C57BL6NJ_P0033629 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033630.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115572077 115762051 + MGP_C57BL6NJ_P0033630 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033631.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115572086 115761790 + MGP_C57BL6NJ_P0033631 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0033632.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115602256 115705554 + Cep112 protein_coding processed_transcript MGP_C57BL6NJ_T0033633.1 MGP_C57BL6NJ_G0019719.1 mouse_genomes_project 11 115648609 115760798 + MGP_C57BL6NJ_P0033633 Cep112 protein_coding protein_coding MGP_C57BL6NJ_T0013030.1 MGP_C57BL6NJ_G0011075.1 mouse_genomes_project 11 102498906 102499383 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029532.1 MGP_C57BL6NJ_G0018699.1 mouse_genomes_project 11 54899149 54934409 - MGP_C57BL6NJ_P0029532 Slc22a5 protein_coding protein_coding MGP_C57BL6NJ_T0029533.1 MGP_C57BL6NJ_G0018699.1 mouse_genomes_project 11 54900104 54912414 - MGP_C57BL6NJ_P0029533 Slc22a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029534.1 MGP_C57BL6NJ_G0018699.1 mouse_genomes_project 11 54914415 54934344 - MGP_C57BL6NJ_P0029534 Slc22a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030381.1 MGP_C57BL6NJ_G0018916.1 mouse_genomes_project 11 71744996 71765397 - MGP_C57BL6NJ_P0030381 Gucy2e protein_coding protein_coding MGP_C57BL6NJ_T0030382.1 MGP_C57BL6NJ_G0018916.1 mouse_genomes_project 11 71744999 71765397 - MGP_C57BL6NJ_P0030382 Gucy2e protein_coding protein_coding MGP_C57BL6NJ_T0030383.1 MGP_C57BL6NJ_G0018916.1 mouse_genomes_project 11 71748037 71765411 - MGP_C57BL6NJ_P0030383 Gucy2e protein_coding protein_coding MGP_C57BL6NJ_T0030384.1 MGP_C57BL6NJ_G0018916.1 mouse_genomes_project 11 71755023 71765397 - Gucy2e protein_coding processed_transcript MGP_C57BL6NJ_T0098971.1 MGP_C57BL6NJ_G0037035.1 mouse_genomes_project 11 114706355 114706467 + Gm27595 rRNA rRNA MGP_C57BL6NJ_T0029145.1 MGP_C57BL6NJ_G0018590.1 mouse_genomes_project 11 46725856 46753312 + MGP_C57BL6NJ_P0029145 Havcr2 protein_coding protein_coding MGP_C57BL6NJ_T0029146.1 MGP_C57BL6NJ_G0018590.1 mouse_genomes_project 11 46725890 46753303 + MGP_C57BL6NJ_P0029146 Havcr2 protein_coding protein_coding MGP_C57BL6NJ_T0006468.1 MGP_C57BL6NJ_G0005394.1 mouse_genomes_project 11 92466507 92479058 + Gm15892 lincRNA lincRNA MGP_C57BL6NJ_T0006469.1 MGP_C57BL6NJ_G0005394.1 mouse_genomes_project 11 92477939 92478608 + Gm15892 lincRNA lincRNA MGP_C57BL6NJ_T0006470.1 MGP_C57BL6NJ_G0005394.1 mouse_genomes_project 11 92477999 92479034 + Gm15892 lincRNA lincRNA MGP_C57BL6NJ_T0003351.1 MGP_C57BL6NJ_G0003095.1 mouse_genomes_project 11 65010622 65011277 - Cdrt4os2 antisense antisense MGP_C57BL6NJ_T0012775.1 MGP_C57BL6NJ_G0010820.1 mouse_genomes_project 11 6553035 6553855 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033530.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113357137 113432888 - MGP_C57BL6NJ_P0033530 Pecam1 protein_coding protein_coding MGP_C57BL6NJ_T0033531.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113357142 113433098 - MGP_C57BL6NJ_P0033531 Pecam1 protein_coding protein_coding MGP_C57BL6NJ_T0033532.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113364091 113368017 - Pecam1 protein_coding retained_intron MGP_C57BL6NJ_T0033533.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113364703 113481843 - MGP_C57BL6NJ_P0033533 Pecam1 protein_coding protein_coding MGP_C57BL6NJ_T0033534.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113399596 113408215 - Pecam1 protein_coding retained_intron MGP_C57BL6NJ_T0033535.1 MGP_C57BL6NJ_G0019702.1 mouse_genomes_project 11 113407950 113432782 - MGP_C57BL6NJ_P0033535 Pecam1 protein_coding protein_coding MGP_C57BL6NJ_T0013072.1 MGP_C57BL6NJ_G0011117.1 mouse_genomes_project 11 118909468 118911636 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003272.1 MGP_C57BL6NJ_G0003028.1 mouse_genomes_project 11 9479890 9499512 + 1700042O10Rik antisense antisense MGP_C57BL6NJ_T0099783.1 MGP_C57BL6NJ_G0037829.1 mouse_genomes_project 11 91714083 91715608 + Gm22068 snRNA snRNA MGP_C57BL6NJ_T0029048.1 MGP_C57BL6NJ_G0018564.1 mouse_genomes_project 11 43057290 43058821 + MGP_C57BL6NJ_P0029048 Gm9972 protein_coding protein_coding MGP_C57BL6NJ_T0031121.1 MGP_C57BL6NJ_G0019095.1 mouse_genomes_project 11 78271022 78275977 - MGP_C57BL6NJ_P0031121 Hic1 protein_coding protein_coding MGP_C57BL6NJ_T0031122.1 MGP_C57BL6NJ_G0019095.1 mouse_genomes_project 11 78273610 78274604 - Hic1 protein_coding processed_transcript MGP_C57BL6NJ_T0034669.1 MGP_C57BL6NJ_G0019926.1 mouse_genomes_project 11 129368135 129370805 - MGP_C57BL6NJ_P0034669 Cd7 protein_coding protein_coding MGP_C57BL6NJ_T0034670.1 MGP_C57BL6NJ_G0019926.1 mouse_genomes_project 11 129369271 129370805 - Cd7 protein_coding retained_intron MGP_C57BL6NJ_T0012805.1 MGP_C57BL6NJ_G0010850.1 mouse_genomes_project 11 17996156 17996804 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033407.1 MGP_C57BL6NJ_G0019670.1 mouse_genomes_project 11 111108807 111169494 + MGP_C57BL6NJ_P0033407 Itgb3 protein_coding protein_coding MGP_C57BL6NJ_T0033408.1 MGP_C57BL6NJ_G0019670.1 mouse_genomes_project 11 111138164 111168831 + Itgb3 protein_coding processed_transcript MGP_C57BL6NJ_T0006384.1 MGP_C57BL6NJ_G0005328.1 mouse_genomes_project 11 40314432 40315392 - 3110004A20Rik lincRNA lincRNA MGP_C57BL6NJ_T0030468.1 MGP_C57BL6NJ_G0018936.1 mouse_genomes_project 11 72243977 72245918 - MGP_C57BL6NJ_P0030468 Cd68 protein_coding protein_coding MGP_C57BL6NJ_T0030469.1 MGP_C57BL6NJ_G0018936.1 mouse_genomes_project 11 72244070 72245827 - Cd68 protein_coding processed_transcript MGP_C57BL6NJ_T0030470.1 MGP_C57BL6NJ_G0018936.1 mouse_genomes_project 11 72244135 72245827 - MGP_C57BL6NJ_P0030470 Cd68 protein_coding protein_coding MGP_C57BL6NJ_T0032215.1 MGP_C57BL6NJ_G0019357.1 mouse_genomes_project 11 99785070 99799211 - MGP_C57BL6NJ_P0032215 Eme1 protein_coding protein_coding MGP_C57BL6NJ_T0032216.1 MGP_C57BL6NJ_G0019357.1 mouse_genomes_project 11 99787806 99790576 - Eme1 protein_coding processed_transcript MGP_C57BL6NJ_T0032217.1 MGP_C57BL6NJ_G0019357.1 mouse_genomes_project 11 99789939 99790751 - Eme1 protein_coding processed_transcript MGP_C57BL6NJ_T0032218.1 MGP_C57BL6NJ_G0019357.1 mouse_genomes_project 11 99790620 99798918 - Eme1 protein_coding processed_transcript MGP_C57BL6NJ_T0034475.1 MGP_C57BL6NJ_G0019889.1 mouse_genomes_project 11 128613067 128682084 - MGP_C57BL6NJ_P0034475 Nploc4 protein_coding protein_coding MGP_C57BL6NJ_T0034476.1 MGP_C57BL6NJ_G0019889.1 mouse_genomes_project 11 128613067 128682084 - MGP_C57BL6NJ_P0034476 Nploc4 protein_coding protein_coding MGP_C57BL6NJ_T0034477.1 MGP_C57BL6NJ_G0019889.1 mouse_genomes_project 11 128615015 128616201 - Nploc4 protein_coding processed_transcript MGP_C57BL6NJ_T0034478.1 MGP_C57BL6NJ_G0019889.1 mouse_genomes_project 11 128638951 128664622 - Nploc4 protein_coding processed_transcript MGP_C57BL6NJ_T0034479.1 MGP_C57BL6NJ_G0019889.1 mouse_genomes_project 11 128648325 128655998 - Nploc4 protein_coding processed_transcript MGP_C57BL6NJ_T0099792.1 MGP_C57BL6NJ_G0037838.1 mouse_genomes_project 11 104050927 104051018 - Gm25048 snRNA snRNA MGP_C57BL6NJ_T0032769.1 MGP_C57BL6NJ_G0019538.1 mouse_genomes_project 11 106183867 106188680 - MGP_C57BL6NJ_P0032769 Krt17 protein_coding protein_coding MGP_C57BL6NJ_T0012824.1 MGP_C57BL6NJ_G0010869.1 mouse_genomes_project 11 20377142 20378086 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028954.1 MGP_C57BL6NJ_G0018539.1 mouse_genomes_project 11 32519261 32840837 - MGP_C57BL6NJ_P0028954 Ranbp17 protein_coding protein_coding MGP_C57BL6NJ_T0028957.1 MGP_C57BL6NJ_G0018539.1 mouse_genomes_project 11 32603967 32840733 - MGP_C57BL6NJ_P0028957 Ranbp17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028958.1 MGP_C57BL6NJ_G0018539.1 mouse_genomes_project 11 32610340 32637304 - Ranbp17 protein_coding processed_transcript MGP_C57BL6NJ_T0028959.1 MGP_C57BL6NJ_G0018539.1 mouse_genomes_project 11 32791888 32840721 - MGP_C57BL6NJ_P0028959 Ranbp17 protein_coding protein_coding MGP_C57BL6NJ_T0028960.1 MGP_C57BL6NJ_G0018539.1 mouse_genomes_project 11 32806207 32840185 - MGP_C57BL6NJ_P0028960 Ranbp17 protein_coding protein_coding MGP_C57BL6NJ_T0003271.1 MGP_C57BL6NJ_G0003027.1 mouse_genomes_project 11 9290592 9291899 - Gm12000 antisense antisense MGP_C57BL6NJ_T0033157.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531339 108535484 - Atxn7l3 protein_coding retained_intron MGP_C57BL6NJ_T0033158.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531339 108537352 - MGP_C57BL6NJ_P0033158 Atxn7l3 protein_coding protein_coding MGP_C57BL6NJ_T0033159.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531339 108538514 - MGP_C57BL6NJ_P0033159 Atxn7l3 protein_coding protein_coding MGP_C57BL6NJ_T0033160.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531339 108537027 - MGP_C57BL6NJ_P0033160 Atxn7l3 protein_coding protein_coding MGP_C57BL6NJ_T0033161.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531339 108536203 - MGP_C57BL6NJ_P0033161 Atxn7l3 protein_coding protein_coding MGP_C57BL6NJ_T0033162.1 MGP_C57BL6NJ_G0019621.1 mouse_genomes_project 11 108531340 108538512 - MGP_C57BL6NJ_P0033162 Atxn7l3 protein_coding protein_coding MGP_C57BL6NJ_T0003369.1 MGP_C57BL6NJ_G0003109.1 mouse_genomes_project 11 71944007 71945195 + Kdm6bos antisense antisense MGP_C57BL6NJ_T0012999.1 MGP_C57BL6NJ_G0011044.1 mouse_genomes_project 11 86538184 86538586 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006489.1 MGP_C57BL6NJ_G0005408.1 mouse_genomes_project 11 101565717 101566967 + Gm11535 lincRNA lincRNA MGP_C57BL6NJ_T0029052.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477840 43484973 - MGP_C57BL6NJ_P0029052 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029053.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477854 43484703 - MGP_C57BL6NJ_P0029053 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029054.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477855 43481708 - MGP_C57BL6NJ_P0029054 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029055.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477859 43484924 - MGP_C57BL6NJ_P0029055 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029056.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477863 43484939 - MGP_C57BL6NJ_P0029056 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029057.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477864 43484685 - MGP_C57BL6NJ_P0029057 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029058.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43477868 43484703 - MGP_C57BL6NJ_P0029058 Pttg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029059.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43478611 43484949 - MGP_C57BL6NJ_P0029059 Pttg1 protein_coding protein_coding MGP_C57BL6NJ_T0029060.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43481636 43484840 - Pttg1 protein_coding processed_transcript MGP_C57BL6NJ_T0029061.1 MGP_C57BL6NJ_G0018566.1 mouse_genomes_project 11 43483343 43484935 - Pttg1 protein_coding retained_intron MGP_C57BL6NJ_T0034293.1 MGP_C57BL6NJ_G0019855.1 mouse_genomes_project 11 126324841 126357221 - MGP_C57BL6NJ_P0034293 Usp36 protein_coding protein_coding MGP_C57BL6NJ_T0034294.1 MGP_C57BL6NJ_G0019855.1 mouse_genomes_project 11 126324842 126331237 - Usp36 protein_coding retained_intron MGP_C57BL6NJ_T0034295.1 MGP_C57BL6NJ_G0019855.1 mouse_genomes_project 11 126326042 126328473 - Usp36 protein_coding retained_intron MGP_C57BL6NJ_T0034296.1 MGP_C57BL6NJ_G0019855.1 mouse_genomes_project 11 126350918 126357196 - Usp36 protein_coding retained_intron MGP_C57BL6NJ_T0032729.1 MGP_C57BL6NJ_G0019507.1 mouse_genomes_project 11 105614047 105614790 - MGP_C57BL6NJ_P0032729 Krtap4-8 protein_coding protein_coding MGP_C57BL6NJ_T0028587.1 MGP_C57BL6NJ_G0018452.1 mouse_genomes_project 11 15290517 15295837 + C1d protein_coding processed_transcript MGP_C57BL6NJ_T0028588.1 MGP_C57BL6NJ_G0018452.1 mouse_genomes_project 11 15290530 15297221 + C1d protein_coding processed_transcript MGP_C57BL6NJ_T0028589.1 MGP_C57BL6NJ_G0018452.1 mouse_genomes_project 11 15290532 15302103 + MGP_C57BL6NJ_P0028589 C1d protein_coding protein_coding MGP_C57BL6NJ_T0028590.1 MGP_C57BL6NJ_G0018452.1 mouse_genomes_project 11 15290626 15299551 + MGP_C57BL6NJ_P0028590 C1d protein_coding protein_coding MGP_C57BL6NJ_T0028591.1 MGP_C57BL6NJ_G0018452.1 mouse_genomes_project 11 15296547 15299487 + C1d protein_coding processed_transcript MGP_C57BL6NJ_T0102745.1 MGP_C57BL6NJ_G0040540.1 mouse_genomes_project 11 76616979 76622866 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0028701.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 21913363 22108498 + MGP_C57BL6NJ_P0028701 Usp34 protein_coding protein_coding MGP_C57BL6NJ_T0028702.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 21913384 22107682 + MGP_C57BL6NJ_P0028702 Usp34 protein_coding protein_coding MGP_C57BL6NJ_T0028703.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22030231 22035953 + Usp34 protein_coding processed_transcript MGP_C57BL6NJ_T0028704.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22035355 22073102 + MGP_C57BL6NJ_P0028704 Usp34 protein_coding protein_coding MGP_C57BL6NJ_T0028705.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22074353 22077313 + Usp34 protein_coding processed_transcript MGP_C57BL6NJ_T0028706.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22074492 22077026 + Usp34 protein_coding processed_transcript MGP_C57BL6NJ_T0028707.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22088493 22106306 + MGP_C57BL6NJ_P0028707 Usp34 protein_coding protein_coding MGP_C57BL6NJ_T0028708.1 MGP_C57BL6NJ_G0018479.1 mouse_genomes_project 11 22104742 22105261 + Usp34 protein_coding processed_transcript MGP_C57BL6NJ_T0033808.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122750983 122768656 - MGP_C57BL6NJ_P0033808 Cd300lf protein_coding protein_coding MGP_C57BL6NJ_T0033809.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122750983 122768656 - MGP_C57BL6NJ_P0033809 Cd300lf protein_coding protein_coding MGP_C57BL6NJ_T0033810.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122750983 122768656 - MGP_C57BL6NJ_P0033810 Cd300lf protein_coding protein_coding MGP_C57BL6NJ_T0033811.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122753563 122768655 - Cd300lf protein_coding processed_transcript MGP_C57BL6NJ_T0033812.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122754976 122761560 - Cd300lf protein_coding processed_transcript MGP_C57BL6NJ_T0033813.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122755060 122761507 - Cd300lf protein_coding processed_transcript MGP_C57BL6NJ_T0033814.1 MGP_C57BL6NJ_G0019765.1 mouse_genomes_project 11 122755072 122761501 - Cd300lf protein_coding processed_transcript MGP_C57BL6NJ_T0029165.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49262790 49268732 + Rack1 protein_coding retained_intron MGP_C57BL6NJ_T0029166.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49262815 49269846 + Rack1 protein_coding processed_transcript MGP_C57BL6NJ_T0029167.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49262818 49270192 + MGP_C57BL6NJ_P0029167 Rack1 protein_coding protein_coding MGP_C57BL6NJ_T0029168.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49262832 49265126 + Rack1 protein_coding retained_intron MGP_C57BL6NJ_T0029169.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49265610 49269831 + Rack1 protein_coding processed_transcript MGP_C57BL6NJ_T0029170.1 MGP_C57BL6NJ_G0018598.1 mouse_genomes_project 11 49269205 49269851 + Rack1 protein_coding processed_transcript MGP_C57BL6NJ_T0006411.1 MGP_C57BL6NJ_G0005352.1 mouse_genomes_project 11 62735842 62743908 + Gm26534 lincRNA lincRNA MGP_C57BL6NJ_T0006466.1 MGP_C57BL6NJ_G0005392.1 mouse_genomes_project 11 92103512 92105197 + Mir142hg lincRNA lincRNA MGP_C57BL6NJ_T0032148.1 MGP_C57BL6NJ_G0019344.1 mouse_genomes_project 11 99305363 99311547 - MGP_C57BL6NJ_P0032148 Wfikkn2 protein_coding protein_coding MGP_C57BL6NJ_T0032149.1 MGP_C57BL6NJ_G0019344.1 mouse_genomes_project 11 99311286 99314845 - Wfikkn2 protein_coding processed_transcript MGP_C57BL6NJ_T0006497.1 MGP_C57BL6NJ_G0005412.1 mouse_genomes_project 11 106021734 106028076 - Gm12347 lincRNA lincRNA MGP_C57BL6NJ_T0032465.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 102937490 103032130 + MGP_C57BL6NJ_P0032465 Arhgap23 protein_coding protein_coding MGP_C57BL6NJ_T0032466.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 102937562 103021448 + MGP_C57BL6NJ_P0032466 Arhgap23 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032467.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 102965823 102973767 + Arhgap23 protein_coding processed_transcript MGP_C57BL6NJ_T0032468.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 102979684 103032128 + MGP_C57BL6NJ_P0032468 Arhgap23 protein_coding protein_coding MGP_C57BL6NJ_T0032469.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 102981654 103032130 + MGP_C57BL6NJ_P0032469 Arhgap23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032471.1 MGP_C57BL6NJ_G0019424.1 mouse_genomes_project 11 103020928 103032126 + MGP_C57BL6NJ_P0032471 Arhgap23 protein_coding protein_coding MGP_C57BL6NJ_T0032213.1 MGP_C57BL6NJ_G0019356.1 mouse_genomes_project 11 99768317 99785291 + MGP_C57BL6NJ_P0032213 Lrrc59 protein_coding protein_coding MGP_C57BL6NJ_T0032214.1 MGP_C57BL6NJ_G0019356.1 mouse_genomes_project 11 99768364 99775287 + Lrrc59 protein_coding retained_intron MGP_C57BL6NJ_T0003415.1 MGP_C57BL6NJ_G0003144.1 mouse_genomes_project 11 100569552 100582388 + Gm11520 antisense antisense MGP_C57BL6NJ_T0012763.1 MGP_C57BL6NJ_G0010808.1 mouse_genomes_project 11 3667069 3667389 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011555.1 MGP_C57BL6NJ_G0009640.1 mouse_genomes_project 11 19629221 19629490 - Gm22600 misc_RNA misc_RNA MGP_C57BL6NJ_T0032071.1 MGP_C57BL6NJ_G0019324.1 mouse_genomes_project 11 93640097 93659347 + MGP_C57BL6NJ_P0032071 Gm525 protein_coding protein_coding MGP_C57BL6NJ_T0032072.1 MGP_C57BL6NJ_G0019324.1 mouse_genomes_project 11 93641265 93659272 + MGP_C57BL6NJ_P0032072 Gm525 protein_coding protein_coding MGP_C57BL6NJ_T0030104.1 MGP_C57BL6NJ_G0018849.1 mouse_genomes_project 11 64600557 64628888 + Trpv2 protein_coding processed_transcript MGP_C57BL6NJ_T0030105.1 MGP_C57BL6NJ_G0018849.1 mouse_genomes_project 11 64600609 64629065 + MGP_C57BL6NJ_P0030105 Trpv2 protein_coding protein_coding MGP_C57BL6NJ_T0030106.1 MGP_C57BL6NJ_G0018849.1 mouse_genomes_project 11 64601618 64607340 + Trpv2 protein_coding processed_transcript MGP_C57BL6NJ_T0030107.1 MGP_C57BL6NJ_G0018849.1 mouse_genomes_project 11 64602196 64628888 + MGP_C57BL6NJ_P0030107 Trpv2 protein_coding protein_coding MGP_C57BL6NJ_T0030108.1 MGP_C57BL6NJ_G0018849.1 mouse_genomes_project 11 64607302 64628888 + Trpv2 protein_coding processed_transcript MGP_C57BL6NJ_T0031986.1 MGP_C57BL6NJ_G0019302.1 mouse_genomes_project 11 92083839 92091563 + MGP_C57BL6NJ_P0031986 Supt4a protein_coding protein_coding MGP_C57BL6NJ_T0031987.1 MGP_C57BL6NJ_G0019302.1 mouse_genomes_project 11 92083839 92091569 + MGP_C57BL6NJ_P0031987 Supt4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031988.1 MGP_C57BL6NJ_G0019302.1 mouse_genomes_project 11 92083840 92091569 + MGP_C57BL6NJ_P0031988 Supt4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030368.1 MGP_C57BL6NJ_G0018911.1 mouse_genomes_project 11 71637262 71639798 - MGP_C57BL6NJ_P0030368 9130213A22Rik protein_coding protein_coding MGP_C57BL6NJ_T0033649.1 MGP_C57BL6NJ_G0019724.1 mouse_genomes_project 11 116390905 116398830 + MGP_C57BL6NJ_P0033649 9930022D16Rik protein_coding protein_coding MGP_C57BL6NJ_T0031668.1 MGP_C57BL6NJ_G0019223.1 mouse_genomes_project 11 86602194 86672417 - MGP_C57BL6NJ_P0031668 Rffl protein_coding protein_coding MGP_C57BL6NJ_T0031669.1 MGP_C57BL6NJ_G0019223.1 mouse_genomes_project 11 86604376 86645632 - MGP_C57BL6NJ_P0031669 Rffl protein_coding protein_coding MGP_C57BL6NJ_T0031670.1 MGP_C57BL6NJ_G0019223.1 mouse_genomes_project 11 86605790 86626871 - MGP_C57BL6NJ_P0031670 Rffl protein_coding protein_coding MGP_C57BL6NJ_T0031671.1 MGP_C57BL6NJ_G0019223.1 mouse_genomes_project 11 86611037 86645876 - MGP_C57BL6NJ_P0031671 Rffl protein_coding protein_coding MGP_C57BL6NJ_T0028741.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22750606 22857412 + MGP_C57BL6NJ_P0028741 Bcl11a protein_coding protein_coding MGP_C57BL6NJ_T0028742.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22750667 22858341 + MGP_C57BL6NJ_P0028742 Bcl11a protein_coding protein_coding MGP_C57BL6NJ_T0028743.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22750697 22763459 + Bcl11a protein_coding retained_intron MGP_C57BL6NJ_T0028744.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22750723 22852667 + MGP_C57BL6NJ_P0028744 Bcl11a protein_coding protein_coding MGP_C57BL6NJ_T0028745.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22753220 22857776 + MGP_C57BL6NJ_P0028745 Bcl11a protein_coding protein_coding MGP_C57BL6NJ_T0028746.1 MGP_C57BL6NJ_G0018488.1 mouse_genomes_project 11 22826606 22847529 + Bcl11a protein_coding processed_transcript MGP_C57BL6NJ_T0032084.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95039964 95099083 - MGP_C57BL6NJ_P0032084 Hlf protein_coding protein_coding MGP_C57BL6NJ_T0032085.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95042418 95097878 - Hlf protein_coding processed_transcript MGP_C57BL6NJ_T0032086.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95042570 95096408 - Hlf protein_coding processed_transcript MGP_C57BL6NJ_T0032087.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95044255 95088169 - Hlf protein_coding processed_transcript MGP_C57BL6NJ_T0032088.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95048976 95096174 - MGP_C57BL6NJ_P0032088 Hlf protein_coding protein_coding MGP_C57BL6NJ_T0032089.1 MGP_C57BL6NJ_G0019331.1 mouse_genomes_project 11 95096123 95097778 - Hlf protein_coding processed_transcript MGP_C57BL6NJ_T0099324.1 MGP_C57BL6NJ_G0037387.1 mouse_genomes_project 11 84167162 84168855 - C030013C21Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0034583.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941015 128942392 + Aspscr1 protein_coding retained_intron MGP_C57BL6NJ_T0034584.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941068 128943997 + Aspscr1 protein_coding retained_intron MGP_C57BL6NJ_T0034585.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941105 128969495 + MGP_C57BL6NJ_P0034585 Aspscr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034586.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941111 128977388 + MGP_C57BL6NJ_P0034586 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034587.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941125 128977010 + MGP_C57BL6NJ_P0034587 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034588.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941140 128957083 + MGP_C57BL6NJ_P0034588 Aspscr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034589.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941401 128957186 + MGP_C57BL6NJ_P0034589 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034590.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941416 128957182 + MGP_C57BL6NJ_P0034590 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034591.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941416 128946468 + MGP_C57BL6NJ_P0034591 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034592.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941434 128957142 + MGP_C57BL6NJ_P0034592 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034593.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128941446 128954716 + MGP_C57BL6NJ_P0034593 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034594.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128944675 128977380 + MGP_C57BL6NJ_P0034594 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034595.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128945240 128946460 + MGP_C57BL6NJ_P0034595 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034596.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128945353 128957312 + MGP_C57BL6NJ_P0034596 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034597.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128954707 128977381 + MGP_C57BL6NJ_P0034597 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034598.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128957288 128977381 + MGP_C57BL6NJ_P0034598 Aspscr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034599.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128957324 128977179 + MGP_C57BL6NJ_P0034599 Aspscr1 protein_coding protein_coding MGP_C57BL6NJ_T0034600.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128970444 128977382 + MGP_C57BL6NJ_P0034600 Aspscr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034601.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128976595 128977380 + Aspscr1 protein_coding retained_intron MGP_C57BL6NJ_T0034602.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128976697 128977385 + Aspscr1 protein_coding retained_intron MGP_C57BL6NJ_T0034603.1 MGP_C57BL6NJ_G0019912.1 mouse_genomes_project 11 128976795 128977383 + Aspscr1 protein_coding retained_intron MGP_C57BL6NJ_T0030030.1 MGP_C57BL6NJ_G0018836.1 mouse_genomes_project 11 63606775 63656120 - Slc5a10 protein_coding processed_transcript MGP_C57BL6NJ_T0030031.1 MGP_C57BL6NJ_G0018836.1 mouse_genomes_project 11 63606776 63655240 - MGP_C57BL6NJ_P0030031 Slc5a10 protein_coding protein_coding MGP_C57BL6NJ_T0030032.1 MGP_C57BL6NJ_G0018836.1 mouse_genomes_project 11 63606776 63656093 - MGP_C57BL6NJ_P0030032 Slc5a10 protein_coding protein_coding MGP_C57BL6NJ_T0030033.1 MGP_C57BL6NJ_G0018836.1 mouse_genomes_project 11 63606786 63655291 - MGP_C57BL6NJ_P0030033 Slc5a10 protein_coding protein_coding MGP_C57BL6NJ_T0102751.1 MGP_C57BL6NJ_G0040546.1 mouse_genomes_project 11 79366180 79366642 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003281.1 MGP_C57BL6NJ_G0003033.1 mouse_genomes_project 11 17191374 17192749 + Gm16141 antisense antisense MGP_C57BL6NJ_T0029710.1 MGP_C57BL6NJ_G0018748.1 mouse_genomes_project 11 60003088 60005869 - MGP_C57BL6NJ_P0029710 Olfr332 protein_coding protein_coding MGP_C57BL6NJ_T0029711.1 MGP_C57BL6NJ_G0018748.1 mouse_genomes_project 11 60003725 60005883 - MGP_C57BL6NJ_P0029711 Olfr332 protein_coding protein_coding MGP_C57BL6NJ_T0029826.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61534472 61553699 - MGP_C57BL6NJ_P0029826 Flcn protein_coding protein_coding MGP_C57BL6NJ_T0029827.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61534521 61553607 - Flcn protein_coding retained_intron MGP_C57BL6NJ_T0029828.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61534854 61553271 - MGP_C57BL6NJ_P0029828 Flcn protein_coding protein_coding MGP_C57BL6NJ_T0029829.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61547441 61553284 - Flcn protein_coding processed_transcript MGP_C57BL6NJ_T0029830.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61548204 61553677 - MGP_C57BL6NJ_P0029830 Flcn protein_coding protein_coding MGP_C57BL6NJ_T0029831.1 MGP_C57BL6NJ_G0018798.1 mouse_genomes_project 11 61552710 61553394 - Flcn protein_coding retained_intron MGP_C57BL6NJ_T0029603.1 MGP_C57BL6NJ_G0018712.1 mouse_genomes_project 11 56015564 56019676 + MGP_C57BL6NJ_P0029603 Hint1 protein_coding protein_coding MGP_C57BL6NJ_T0029604.1 MGP_C57BL6NJ_G0018712.1 mouse_genomes_project 11 56015662 56019482 + MGP_C57BL6NJ_P0029604 Hint1 protein_coding protein_coding MGP_C57BL6NJ_T0029463.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54319663 54397748 + MGP_C57BL6NJ_P0029463 Aff4 protein_coding protein_coding MGP_C57BL6NJ_T0029464.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54340862 54345337 + MGP_C57BL6NJ_P0029464 Aff4 protein_coding protein_coding MGP_C57BL6NJ_T0029465.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54341419 54348755 + Aff4 protein_coding retained_intron MGP_C57BL6NJ_T0029466.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54345396 54348527 + Aff4 protein_coding retained_intron MGP_C57BL6NJ_T0029467.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54345782 54372452 + MGP_C57BL6NJ_P0029467 Aff4 protein_coding protein_coding MGP_C57BL6NJ_T0029468.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54345790 54374134 + Aff4 protein_coding processed_transcript MGP_C57BL6NJ_T0029469.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54380461 54385462 + Aff4 protein_coding retained_intron MGP_C57BL6NJ_T0029470.1 MGP_C57BL6NJ_G0018681.1 mouse_genomes_project 11 54386611 54391751 + Aff4 protein_coding retained_intron MGP_C57BL6NJ_T0029190.1 MGP_C57BL6NJ_G0018606.1 mouse_genomes_project 11 49583762 49605559 + MGP_C57BL6NJ_P0029190 Ifi47 protein_coding protein_coding MGP_C57BL6NJ_T0029191.1 MGP_C57BL6NJ_G0018606.1 mouse_genomes_project 11 49593876 49604021 + Ifi47 protein_coding processed_transcript MGP_C57BL6NJ_T0029193.1 MGP_C57BL6NJ_G0018606.1 mouse_genomes_project 11 49594215 49605557 + MGP_C57BL6NJ_P0029193 Ifi47 protein_coding protein_coding MGP_C57BL6NJ_T0009968.1 MGP_C57BL6NJ_G0008053.1 mouse_genomes_project 11 128213010 128213108 - Mir338 miRNA miRNA MGP_C57BL6NJ_T0006425.1 MGP_C57BL6NJ_G0005363.1 mouse_genomes_project 11 69427639 69435277 - 2310065F04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006426.1 MGP_C57BL6NJ_G0005363.1 mouse_genomes_project 11 69429187 69432012 - 2310065F04Rik lincRNA lincRNA MGP_C57BL6NJ_T0012793.1 MGP_C57BL6NJ_G0010838.1 mouse_genomes_project 11 14613300 14614213 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101076.1 MGP_C57BL6NJ_G0039122.1 mouse_genomes_project 11 103340972 103341067 - Gm27326 snoRNA snoRNA MGP_C57BL6NJ_T0028720.1 MGP_C57BL6NJ_G0018482.1 mouse_genomes_project 11 22184677 22259654 - MGP_C57BL6NJ_P0028720 0610010F05Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028721.1 MGP_C57BL6NJ_G0018482.1 mouse_genomes_project 11 22192926 22259645 - MGP_C57BL6NJ_P0028721 0610010F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0028722.1 MGP_C57BL6NJ_G0018482.1 mouse_genomes_project 11 22196315 22218118 - MGP_C57BL6NJ_P0028722 0610010F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0028723.1 MGP_C57BL6NJ_G0018482.1 mouse_genomes_project 11 22254981 22259736 - MGP_C57BL6NJ_P0028723 0610010F05Rik protein_coding protein_coding MGP_C57BL6NJ_T0029670.1 MGP_C57BL6NJ_G0018734.1 mouse_genomes_project 11 59544160 59561508 + MGP_C57BL6NJ_P0029670 Cnot8 protein_coding protein_coding MGP_C57BL6NJ_T0029671.1 MGP_C57BL6NJ_G0018734.1 mouse_genomes_project 11 59544236 59561508 + MGP_C57BL6NJ_P0029671 Cnot8 protein_coding protein_coding MGP_C57BL6NJ_T0029672.1 MGP_C57BL6NJ_G0018734.1 mouse_genomes_project 11 59544373 59552351 + MGP_C57BL6NJ_P0029672 Cnot8 protein_coding protein_coding MGP_C57BL6NJ_T0029673.1 MGP_C57BL6NJ_G0018734.1 mouse_genomes_project 11 59556231 59560172 + Cnot8 protein_coding processed_transcript MGP_C57BL6NJ_T0033694.1 MGP_C57BL6NJ_G0019735.1 mouse_genomes_project 11 117209501 117289108 - MGP_C57BL6NJ_P0033694 Abca6 protein_coding protein_coding MGP_C57BL6NJ_T0033695.1 MGP_C57BL6NJ_G0019735.1 mouse_genomes_project 11 117272365 117289108 - Abca6 protein_coding processed_transcript MGP_C57BL6NJ_T0003385.1 MGP_C57BL6NJ_G0003123.1 mouse_genomes_project 11 83265610 83270328 - Rab11fip4os2 antisense antisense MGP_C57BL6NJ_T0003386.1 MGP_C57BL6NJ_G0003123.1 mouse_genomes_project 11 83269111 83270373 - Rab11fip4os2 antisense antisense MGP_C57BL6NJ_T0017720.1 MGP_C57BL6NJ_G0015601.1 mouse_genomes_project 11 106305034 106306221 - Gm20394 processed_transcript processed_transcript MGP_C57BL6NJ_T0033360.1 MGP_C57BL6NJ_G0019661.1 mouse_genomes_project 11 110187682 110231631 + MGP_C57BL6NJ_P0033360 Wnt3 protein_coding protein_coding MGP_C57BL6NJ_T0017721.1 MGP_C57BL6NJ_G0015602.1 mouse_genomes_project 11 106364967 106365712 + Gm12348 processed_transcript processed_transcript MGP_C57BL6NJ_T0028769.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27333743 27546414 - MGP_C57BL6NJ_P0028769 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028770.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27333750 27546414 - MGP_C57BL6NJ_P0028770 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028771.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27333750 27546442 - MGP_C57BL6NJ_P0028771 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028772.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27335210 27546113 - MGP_C57BL6NJ_P0028772 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028773.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27336875 27383066 - MGP_C57BL6NJ_P0028773 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028774.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27336902 27535750 - MGP_C57BL6NJ_P0028774 Ccdc85a protein_coding protein_coding MGP_C57BL6NJ_T0028775.1 MGP_C57BL6NJ_G0018494.1 mouse_genomes_project 11 27534509 27546384 - Ccdc85a protein_coding retained_intron MGP_C57BL6NJ_T0028203.1 MGP_C57BL6NJ_G0018363.1 mouse_genomes_project 11 958485 974232 + MGP_C57BL6NJ_P0028203 Pes1 protein_coding protein_coding MGP_C57BL6NJ_T0028204.1 MGP_C57BL6NJ_G0018363.1 mouse_genomes_project 11 958519 965253 + Pes1 protein_coding processed_transcript MGP_C57BL6NJ_T0028205.1 MGP_C57BL6NJ_G0018363.1 mouse_genomes_project 11 958559 971302 + Pes1 protein_coding processed_transcript MGP_C57BL6NJ_T0003512.1 MGP_C57BL6NJ_G0003223.1 mouse_genomes_project 11 128736051 128739041 - Gm11788 antisense antisense MGP_C57BL6NJ_T0012784.1 MGP_C57BL6NJ_G0010829.1 mouse_genomes_project 11 12288134 12288537 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034171.1 MGP_C57BL6NJ_G0019830.1 mouse_genomes_project 11 124613220 124658453 - MGP_C57BL6NJ_P0034171 protein_coding protein_coding MGP_C57BL6NJ_T0009887.1 MGP_C57BL6NJ_G0007972.1 mouse_genomes_project 11 70653628 70653748 + Mir6406 miRNA miRNA MGP_C57BL6NJ_T0009950.1 MGP_C57BL6NJ_G0008035.1 mouse_genomes_project 11 109323486 109323560 - Mir6931 miRNA miRNA MGP_C57BL6NJ_T0101039.1 MGP_C57BL6NJ_G0039085.1 mouse_genomes_project 11 60211223 60211355 + Gm22599 snoRNA snoRNA MGP_C57BL6NJ_T0006402.1 MGP_C57BL6NJ_G0005343.1 mouse_genomes_project 11 52761875 53142038 - lincRNA lincRNA MGP_C57BL6NJ_T0033332.1 MGP_C57BL6NJ_G0019651.1 mouse_genomes_project 11 109570062 109580368 - MGP_C57BL6NJ_P0033332 Spata32 protein_coding protein_coding MGP_C57BL6NJ_T0029907.1 MGP_C57BL6NJ_G0018812.1 mouse_genomes_project 11 62331082 62349098 + Alkbh5 protein_coding processed_transcript MGP_C57BL6NJ_T0029908.1 MGP_C57BL6NJ_G0018812.1 mouse_genomes_project 11 62332679 62353255 + MGP_C57BL6NJ_P0029908 Alkbh5 protein_coding protein_coding MGP_C57BL6NJ_T0006532.1 MGP_C57BL6NJ_G0005439.1 mouse_genomes_project 11 124969879 124971713 + Gm11731 lincRNA lincRNA MGP_C57BL6NJ_T0012871.1 MGP_C57BL6NJ_G0010916.1 mouse_genomes_project 11 40259564 40260225 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098964.1 MGP_C57BL6NJ_G0037028.1 mouse_genomes_project 11 75101811 75101927 + n-R5s70 rRNA rRNA MGP_C57BL6NJ_T0029113.1 MGP_C57BL6NJ_G0018581.1 mouse_genomes_project 11 46173925 46182577 - MGP_C57BL6NJ_P0029113 Thg1l protein_coding protein_coding MGP_C57BL6NJ_T0029114.1 MGP_C57BL6NJ_G0018581.1 mouse_genomes_project 11 46173925 46182271 - MGP_C57BL6NJ_P0029114 Thg1l protein_coding protein_coding MGP_C57BL6NJ_T0029115.1 MGP_C57BL6NJ_G0018581.1 mouse_genomes_project 11 46177278 46181500 - Thg1l protein_coding processed_transcript MGP_C57BL6NJ_T0029116.1 MGP_C57BL6NJ_G0018581.1 mouse_genomes_project 11 46178260 46182240 - Thg1l protein_coding processed_transcript MGP_C57BL6NJ_T0029117.1 MGP_C57BL6NJ_G0018581.1 mouse_genomes_project 11 46181352 46182566 - Thg1l protein_coding processed_transcript MGP_C57BL6NJ_T0029725.1 MGP_C57BL6NJ_G0018756.1 mouse_genomes_project 11 60159790 60160762 - MGP_C57BL6NJ_P0029725 Olfr323 protein_coding protein_coding MGP_C57BL6NJ_T0029726.1 MGP_C57BL6NJ_G0018756.1 mouse_genomes_project 11 60159790 60160759 - MGP_C57BL6NJ_P0029726 Olfr323 protein_coding protein_coding MGP_C57BL6NJ_T0006377.1 MGP_C57BL6NJ_G0005321.1 mouse_genomes_project 11 32363963 32384047 + lincRNA lincRNA MGP_C57BL6NJ_T0029902.1 MGP_C57BL6NJ_G0018811.1 mouse_genomes_project 11 62257543 62323073 + MGP_C57BL6NJ_P0029902 Myo15 protein_coding protein_coding MGP_C57BL6NJ_T0029903.1 MGP_C57BL6NJ_G0018811.1 mouse_genomes_project 11 62257543 62323073 + MGP_C57BL6NJ_P0029903 Myo15 protein_coding protein_coding MGP_C57BL6NJ_T0029904.1 MGP_C57BL6NJ_G0018811.1 mouse_genomes_project 11 62257543 62323073 + MGP_C57BL6NJ_P0029904 Myo15 protein_coding protein_coding MGP_C57BL6NJ_T0029905.1 MGP_C57BL6NJ_G0018811.1 mouse_genomes_project 11 62268153 62302528 + MGP_C57BL6NJ_P0029905 Myo15 protein_coding protein_coding MGP_C57BL6NJ_T0029906.1 MGP_C57BL6NJ_G0018811.1 mouse_genomes_project 11 62302349 62314695 + Myo15 protein_coding retained_intron MGP_C57BL6NJ_T0013074.1 MGP_C57BL6NJ_G0011119.1 mouse_genomes_project 11 121033615 121034398 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031105.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 77997622 78018422 - MGP_C57BL6NJ_P0031105 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031106.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 77997772 78018299 - Srr protein_coding processed_transcript MGP_C57BL6NJ_T0031107.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 77998056 78018397 - MGP_C57BL6NJ_P0031107 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031108.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 77998062 78018572 - MGP_C57BL6NJ_P0031108 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031109.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 77998082 78018397 - MGP_C57BL6NJ_P0031109 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031110.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 78001004 78018306 - MGP_C57BL6NJ_P0031110 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031111.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 78001485 78018284 - MGP_C57BL6NJ_P0031111 Srr protein_coding protein_coding MGP_C57BL6NJ_T0031112.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 78001630 78018327 - Srr protein_coding retained_intron MGP_C57BL6NJ_T0031113.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 78001715 78018299 - Srr protein_coding retained_intron MGP_C57BL6NJ_T0031114.1 MGP_C57BL6NJ_G0019093.1 mouse_genomes_project 11 78002365 78018282 - MGP_C57BL6NJ_P0031114 Srr protein_coding protein_coding MGP_C57BL6NJ_T0028631.1 MGP_C57BL6NJ_G0018463.1 mouse_genomes_project 11 19518266 19571991 + Peli1 protein_coding retained_intron MGP_C57BL6NJ_T0028632.1 MGP_C57BL6NJ_G0018463.1 mouse_genomes_project 11 19518266 19580316 + MGP_C57BL6NJ_P0028632 Peli1 protein_coding protein_coding MGP_C57BL6NJ_T0028633.1 MGP_C57BL6NJ_G0018463.1 mouse_genomes_project 11 19519093 19579395 + Peli1 protein_coding retained_intron MGP_C57BL6NJ_T0028634.1 MGP_C57BL6NJ_G0018463.1 mouse_genomes_project 11 19565224 19580316 + MGP_C57BL6NJ_P0028634 Peli1 protein_coding protein_coding MGP_C57BL6NJ_T0012762.1 MGP_C57BL6NJ_G0010807.1 mouse_genomes_project 11 3446945 3447289 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030721.1 MGP_C57BL6NJ_G0018989.1 mouse_genomes_project 11 73192571 73198506 + MGP_C57BL6NJ_P0030721 Tm4sf5 protein_coding protein_coding MGP_C57BL6NJ_T0030722.1 MGP_C57BL6NJ_G0018989.1 mouse_genomes_project 11 73197297 73198210 + Tm4sf5 protein_coding processed_transcript MGP_C57BL6NJ_T0030723.1 MGP_C57BL6NJ_G0018989.1 mouse_genomes_project 11 73197533 73198295 + Tm4sf5 protein_coding retained_intron MGP_C57BL6NJ_T0011562.1 MGP_C57BL6NJ_G0009647.1 mouse_genomes_project 11 69720615 69720928 + Gm26476 misc_RNA misc_RNA MGP_C57BL6NJ_T0030516.1 MGP_C57BL6NJ_G0018946.1 mouse_genomes_project 11 72398155 72403752 - MGP_C57BL6NJ_P0030516 Fgf11 protein_coding protein_coding MGP_C57BL6NJ_T0030517.1 MGP_C57BL6NJ_G0018946.1 mouse_genomes_project 11 72398160 72403893 - MGP_C57BL6NJ_P0030517 Fgf11 protein_coding protein_coding MGP_C57BL6NJ_T0003287.1 MGP_C57BL6NJ_G0003038.1 mouse_genomes_project 11 28465934 28468173 + Gm12089 antisense antisense MGP_C57BL6NJ_T0034514.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128738485 128745834 + MGP_C57BL6NJ_P0034514 Slc25a10 protein_coding protein_coding MGP_C57BL6NJ_T0034515.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128738533 128745240 + Slc25a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034516.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128738554 128742560 + Slc25a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034517.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128738560 128743563 + Slc25a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034518.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128742745 128744610 + Slc25a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034519.1 MGP_C57BL6NJ_G0019897.1 mouse_genomes_project 11 128744371 128744924 + Slc25a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034732.1 MGP_C57BL6NJ_G0019944.1 mouse_genomes_project 11 130081780 130095295 + MGP_C57BL6NJ_P0034732 Metrnl protein_coding protein_coding MGP_C57BL6NJ_T0034733.1 MGP_C57BL6NJ_G0019944.1 mouse_genomes_project 11 130081999 130095068 + MGP_C57BL6NJ_P0034733 Metrnl protein_coding protein_coding MGP_C57BL6NJ_T0033352.1 MGP_C57BL6NJ_G0019657.1 mouse_genomes_project 11 110037140 110044950 - MGP_C57BL6NJ_P0033352 Lyzl6 protein_coding protein_coding MGP_C57BL6NJ_T0033353.1 MGP_C57BL6NJ_G0019657.1 mouse_genomes_project 11 110037143 110044961 - MGP_C57BL6NJ_P0033353 Lyzl6 protein_coding protein_coding MGP_C57BL6NJ_T0033354.1 MGP_C57BL6NJ_G0019657.1 mouse_genomes_project 11 110037146 110041092 - Lyzl6 protein_coding processed_transcript MGP_C57BL6NJ_T0009875.1 MGP_C57BL6NJ_G0007960.1 mouse_genomes_project 11 55795243 55795320 - Gm26116 miRNA miRNA MGP_C57BL6NJ_T0006533.1 MGP_C57BL6NJ_G0005440.1 mouse_genomes_project 11 124992480 124994646 + Snhg20 lincRNA lincRNA MGP_C57BL6NJ_T0006534.1 MGP_C57BL6NJ_G0005440.1 mouse_genomes_project 11 124992480 124993148 + Snhg20 lincRNA lincRNA MGP_C57BL6NJ_T0006535.1 MGP_C57BL6NJ_G0005440.1 mouse_genomes_project 11 124992492 124994645 + Snhg20 lincRNA lincRNA MGP_C57BL6NJ_T0030873.1 MGP_C57BL6NJ_G0019015.1 mouse_genomes_project 11 73833363 73900024 - MGP_C57BL6NJ_P0030873 Nlrp1a protein_coding protein_coding MGP_C57BL6NJ_T0030874.1 MGP_C57BL6NJ_G0019015.1 mouse_genomes_project 11 73833363 73897724 - MGP_C57BL6NJ_P0030874 Nlrp1a protein_coding protein_coding MGP_C57BL6NJ_T0030541.1 MGP_C57BL6NJ_G0018956.1 mouse_genomes_project 11 72491821 72502860 - MGP_C57BL6NJ_P0030541 Acap1 protein_coding protein_coding MGP_C57BL6NJ_T0030542.1 MGP_C57BL6NJ_G0018956.1 mouse_genomes_project 11 72491821 72508093 - MGP_C57BL6NJ_P0030542 Acap1 protein_coding protein_coding MGP_C57BL6NJ_T0030543.1 MGP_C57BL6NJ_G0018956.1 mouse_genomes_project 11 72491879 72513089 - MGP_C57BL6NJ_P0030543 Acap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030544.1 MGP_C57BL6NJ_G0018956.1 mouse_genomes_project 11 72493737 72498672 - Acap1 protein_coding processed_transcript MGP_C57BL6NJ_T0030545.1 MGP_C57BL6NJ_G0018956.1 mouse_genomes_project 11 72501902 72503020 - Acap1 protein_coding processed_transcript MGP_C57BL6NJ_T0030046.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63917316 64087439 + Specc1 protein_coding retained_intron MGP_C57BL6NJ_T0030047.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63917316 64107259 + MGP_C57BL6NJ_P0030047 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030048.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63917332 64107711 + MGP_C57BL6NJ_P0030048 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030049.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63917363 64011133 + Specc1 protein_coding retained_intron MGP_C57BL6NJ_T0030050.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63917368 64197899 + MGP_C57BL6NJ_P0030050 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030051.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63937969 64039344 + Specc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030052.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63967166 64107259 + MGP_C57BL6NJ_P0030052 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030053.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63982020 64110914 + MGP_C57BL6NJ_P0030053 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030054.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63982036 64198428 + MGP_C57BL6NJ_P0030054 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030055.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63992328 64200832 + MGP_C57BL6NJ_P0030055 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030056.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 63992328 64202716 + MGP_C57BL6NJ_P0030056 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030057.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042631 64202710 + MGP_C57BL6NJ_P0030057 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030058.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042635 64198048 + MGP_C57BL6NJ_P0030058 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030059.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042681 64043958 + Specc1 protein_coding retained_intron MGP_C57BL6NJ_T0030060.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042695 64107272 + MGP_C57BL6NJ_P0030060 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030061.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042727 64107710 + MGP_C57BL6NJ_P0030061 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0030062.1 MGP_C57BL6NJ_G0018841.1 mouse_genomes_project 11 64042733 64202716 + MGP_C57BL6NJ_P0030062 Specc1 protein_coding protein_coding MGP_C57BL6NJ_T0012847.1 MGP_C57BL6NJ_G0010892.1 mouse_genomes_project 11 28653886 28655481 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003364.1 MGP_C57BL6NJ_G0003104.1 mouse_genomes_project 11 70624443 70628404 - C78197 antisense antisense MGP_C57BL6NJ_T0003384.1 MGP_C57BL6NJ_G0003122.1 mouse_genomes_project 11 83199396 83215481 - Rab11fip4os1 antisense antisense MGP_C57BL6NJ_T0029938.1 MGP_C57BL6NJ_G0018819.1 mouse_genomes_project 11 62676746 62708459 + MGP_C57BL6NJ_P0029938 Dhrs7b protein_coding protein_coding MGP_C57BL6NJ_T0032277.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100598513 100644343 + MGP_C57BL6NJ_P0032277 Fam117a protein_coding protein_coding MGP_C57BL6NJ_T0032278.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100598515 100637554 + Fam117a protein_coding processed_transcript MGP_C57BL6NJ_T0032279.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100601426 100638103 + Fam117a protein_coding processed_transcript MGP_C57BL6NJ_T0032280.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100601428 100625522 + Fam117a protein_coding processed_transcript MGP_C57BL6NJ_T0032281.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100601457 100637558 + Fam117a protein_coding processed_transcript MGP_C57BL6NJ_T0032282.1 MGP_C57BL6NJ_G0019374.1 mouse_genomes_project 11 100637937 100640056 + Fam117a protein_coding processed_transcript MGP_C57BL6NJ_T0032283.1 MGP_C57BL6NJ_G0019375.1 mouse_genomes_project 11 100648497 100651631 + MGP_C57BL6NJ_P0032283 Slc35b1 protein_coding protein_coding MGP_C57BL6NJ_T0032284.1 MGP_C57BL6NJ_G0019375.1 mouse_genomes_project 11 100648631 100655517 + MGP_C57BL6NJ_P0032284 Slc35b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032285.1 MGP_C57BL6NJ_G0019375.1 mouse_genomes_project 11 100648642 100655518 + MGP_C57BL6NJ_P0032285 Slc35b1 protein_coding protein_coding MGP_C57BL6NJ_T0032286.1 MGP_C57BL6NJ_G0019375.1 mouse_genomes_project 11 100648646 100650052 + Slc35b1 protein_coding retained_intron MGP_C57BL6NJ_T0032287.1 MGP_C57BL6NJ_G0019375.1 mouse_genomes_project 11 100653725 100654394 + Slc35b1 protein_coding retained_intron MGP_C57BL6NJ_T0029832.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61561477 61562370 - Cops3 protein_coding processed_transcript MGP_C57BL6NJ_T0029833.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61561477 61585262 - MGP_C57BL6NJ_P0029833 Cops3 protein_coding protein_coding MGP_C57BL6NJ_T0029834.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61565033 61580609 - MGP_C57BL6NJ_P0029834 Cops3 protein_coding protein_coding MGP_C57BL6NJ_T0029835.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61566959 61585262 - Cops3 protein_coding processed_transcript MGP_C57BL6NJ_T0029836.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61567987 61576967 - Cops3 protein_coding processed_transcript MGP_C57BL6NJ_T0029837.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61569883 61585262 - Cops3 protein_coding processed_transcript MGP_C57BL6NJ_T0029838.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61576764 61585176 - MGP_C57BL6NJ_P0029838 Cops3 protein_coding protein_coding MGP_C57BL6NJ_T0029839.1 MGP_C57BL6NJ_G0018799.1 mouse_genomes_project 11 61580311 61585236 - Cops3 protein_coding processed_transcript MGP_C57BL6NJ_T0030154.1 MGP_C57BL6NJ_G0018861.1 mouse_genomes_project 11 65990260 66028982 - MGP_C57BL6NJ_P0030154 Hs3st3b1 protein_coding protein_coding MGP_C57BL6NJ_T0030417.1 MGP_C57BL6NJ_G0018923.1 mouse_genomes_project 11 71937997 71938835 + Naa38 protein_coding processed_transcript MGP_C57BL6NJ_T0030418.1 MGP_C57BL6NJ_G0018923.1 mouse_genomes_project 11 71938157 71939191 + MGP_C57BL6NJ_P0030418 Naa38 protein_coding protein_coding MGP_C57BL6NJ_T0030419.1 MGP_C57BL6NJ_G0018923.1 mouse_genomes_project 11 71938324 71939191 + Naa38 protein_coding processed_transcript MGP_C57BL6NJ_T0030420.1 MGP_C57BL6NJ_G0018923.1 mouse_genomes_project 11 71938628 71939191 + Naa38 protein_coding processed_transcript MGP_C57BL6NJ_T0003509.1 MGP_C57BL6NJ_G0003220.1 mouse_genomes_project 11 128128797 128135693 - Gm11767 antisense antisense MGP_C57BL6NJ_T0034242.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125783792 125785867 + MGP_C57BL6NJ_P0034242 Tmc8 protein_coding protein_coding MGP_C57BL6NJ_T0034243.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125784013 125796343 + MGP_C57BL6NJ_P0034243 Tmc8 protein_coding protein_coding MGP_C57BL6NJ_T0034244.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125784031 125796425 + MGP_C57BL6NJ_P0034244 Tmc8 protein_coding protein_coding MGP_C57BL6NJ_T0034245.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125784101 125794607 + MGP_C57BL6NJ_P0034245 Tmc8 protein_coding protein_coding MGP_C57BL6NJ_T0034246.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125784374 125796398 + MGP_C57BL6NJ_P0034246 Tmc8 protein_coding protein_coding MGP_C57BL6NJ_T0034247.1 MGP_C57BL6NJ_G0019842.1 mouse_genomes_project 11 125792911 125794337 + Tmc8 protein_coding retained_intron MGP_C57BL6NJ_T0006454.1 MGP_C57BL6NJ_G0005384.1 mouse_genomes_project 11 85725785 85729149 + Gm11419 lincRNA lincRNA MGP_C57BL6NJ_T0033634.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115841736 115878825 + MGP_C57BL6NJ_P0033634 Axin2 protein_coding protein_coding MGP_C57BL6NJ_T0033635.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115842187 115844989 + MGP_C57BL6NJ_P0033635 Axin2 protein_coding protein_coding MGP_C57BL6NJ_T0033636.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115842723 115845004 + MGP_C57BL6NJ_P0033636 Axin2 protein_coding protein_coding MGP_C57BL6NJ_T0033637.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115843035 115844900 + MGP_C57BL6NJ_P0033637 Axin2 protein_coding protein_coding MGP_C57BL6NJ_T0033638.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115844586 115877553 + MGP_C57BL6NJ_P0033638 Axin2 protein_coding protein_coding MGP_C57BL6NJ_T0033639.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115863420 115867113 + Axin2 protein_coding processed_transcript MGP_C57BL6NJ_T0033640.1 MGP_C57BL6NJ_G0019720.1 mouse_genomes_project 11 115869559 115878825 + Axin2 protein_coding processed_transcript MGP_C57BL6NJ_T0006332.1 MGP_C57BL6NJ_G0005283.1 mouse_genomes_project 11 1304590 1306070 + Gm11958 lincRNA lincRNA MGP_C57BL6NJ_T0028728.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22294633 22363415 + MGP_C57BL6NJ_P0028728 Pus10 protein_coding protein_coding MGP_C57BL6NJ_T0028729.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22294656 22362064 + MGP_C57BL6NJ_P0028729 Pus10 protein_coding protein_coding MGP_C57BL6NJ_T0028730.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22294966 22363415 + MGP_C57BL6NJ_P0028730 Pus10 protein_coding protein_coding MGP_C57BL6NJ_T0028731.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22295147 22302273 + Pus10 protein_coding retained_intron MGP_C57BL6NJ_T0028732.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22295470 22302159 + MGP_C57BL6NJ_P0028732 Pus10 protein_coding protein_coding MGP_C57BL6NJ_T0028733.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22348127 22359610 + Pus10 protein_coding retained_intron MGP_C57BL6NJ_T0028734.1 MGP_C57BL6NJ_G0018484.1 mouse_genomes_project 11 22349201 22361937 + Pus10 protein_coding retained_intron MGP_C57BL6NJ_T0029441.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53102553 53117094 + MGP_C57BL6NJ_P0029441 Skp1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029442.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53102567 53118858 + MGP_C57BL6NJ_P0029442 Skp1a protein_coding protein_coding MGP_C57BL6NJ_T0029443.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53102595 53110553 + Skp1a protein_coding retained_intron MGP_C57BL6NJ_T0029444.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53102595 53117097 + MGP_C57BL6NJ_P0029444 Skp1a protein_coding protein_coding MGP_C57BL6NJ_T0029445.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53102747 53118858 + MGP_C57BL6NJ_P0029445 Skp1a protein_coding protein_coding MGP_C57BL6NJ_T0029446.1 MGP_C57BL6NJ_G0018674.1 mouse_genomes_project 11 53108992 53118058 + MGP_C57BL6NJ_P0029446 Skp1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029642.1 MGP_C57BL6NJ_G0018724.1 mouse_genomes_project 11 56667524 56705999 + MGP_C57BL6NJ_P0029642 G3bp1 protein_coding protein_coding MGP_C57BL6NJ_T0029643.1 MGP_C57BL6NJ_G0018724.1 mouse_genomes_project 11 56667557 56688369 + G3bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0032578.1 MGP_C57BL6NJ_G0019452.1 mouse_genomes_project 11 104010056 104014943 - Pgap3 protein_coding processed_transcript MGP_C57BL6NJ_T0032579.1 MGP_C57BL6NJ_G0019452.1 mouse_genomes_project 11 104010056 104024714 - MGP_C57BL6NJ_P0032579 Pgap3 protein_coding protein_coding MGP_C57BL6NJ_T0032580.1 MGP_C57BL6NJ_G0019452.1 mouse_genomes_project 11 104011003 104024659 - MGP_C57BL6NJ_P0032580 Pgap3 protein_coding protein_coding MGP_C57BL6NJ_T0032581.1 MGP_C57BL6NJ_G0019452.1 mouse_genomes_project 11 104014192 104024638 - Pgap3 protein_coding processed_transcript MGP_C57BL6NJ_T0032582.1 MGP_C57BL6NJ_G0019452.1 mouse_genomes_project 11 104022794 104024661 - Pgap3 protein_coding processed_transcript MGP_C57BL6NJ_T0017658.1 MGP_C57BL6NJ_G0015567.1 mouse_genomes_project 11 60890330 60892880 - 2610507I01Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012890.1 MGP_C57BL6NJ_G0010935.1 mouse_genomes_project 11 49001179 49001840 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003463.1 MGP_C57BL6NJ_G0003184.1 mouse_genomes_project 11 112587521 112609628 - Gm11651 antisense antisense MGP_C57BL6NJ_T0003464.1 MGP_C57BL6NJ_G0003184.1 mouse_genomes_project 11 112593557 112609600 - Gm11651 antisense antisense MGP_C57BL6NJ_T0013040.1 MGP_C57BL6NJ_G0011085.1 mouse_genomes_project 11 105870677 105871136 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030376.1 MGP_C57BL6NJ_G0018914.1 mouse_genomes_project 11 71679521 71692386 + MGP_C57BL6NJ_P0030376 Alox12b protein_coding protein_coding MGP_C57BL6NJ_T0032617.1 MGP_C57BL6NJ_G0019462.1 mouse_genomes_project 11 104378701 104392664 + MGP_C57BL6NJ_P0032617 Csf3 protein_coding protein_coding MGP_C57BL6NJ_T0017667.1 MGP_C57BL6NJ_G0015570.1 mouse_genomes_project 11 64631423 64633354 + 2410006H16Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011569.1 MGP_C57BL6NJ_G0009654.1 mouse_genomes_project 11 93706410 93706672 - Gm24734 misc_RNA misc_RNA MGP_C57BL6NJ_T0032705.1 MGP_C57BL6NJ_G0019486.1 mouse_genomes_project 11 105280841 105295969 - MGP_C57BL6NJ_P0032705 Krt23 protein_coding protein_coding MGP_C57BL6NJ_T0013027.1 MGP_C57BL6NJ_G0011072.1 mouse_genomes_project 11 101635560 101636117 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032647.1 MGP_C57BL6NJ_G0019467.1 mouse_genomes_project 11 104516007 104546440 + MGP_C57BL6NJ_P0032647 Casc3 protein_coding protein_coding MGP_C57BL6NJ_T0032648.1 MGP_C57BL6NJ_G0019467.1 mouse_genomes_project 11 104516156 104546432 + MGP_C57BL6NJ_P0032648 Casc3 protein_coding protein_coding MGP_C57BL6NJ_T0032649.1 MGP_C57BL6NJ_G0019467.1 mouse_genomes_project 11 104516498 104517277 + Casc3 protein_coding processed_transcript MGP_C57BL6NJ_T0032650.1 MGP_C57BL6NJ_G0019467.1 mouse_genomes_project 11 104516509 104531988 + Casc3 protein_coding processed_transcript MGP_C57BL6NJ_T0031585.1 MGP_C57BL6NJ_G0019200.1 mouse_genomes_project 11 83827514 83844408 + MGP_C57BL6NJ_P0031585 Rnf135 protein_coding protein_coding MGP_C57BL6NJ_T0031586.1 MGP_C57BL6NJ_G0019200.1 mouse_genomes_project 11 83827886 83832312 + Rnf135 protein_coding processed_transcript MGP_C57BL6NJ_T0028313.1 MGP_C57BL6NJ_G0018388.1 mouse_genomes_project 11 2147868 2152040 + MGP_C57BL6NJ_P0028313 Rasl10a protein_coding protein_coding MGP_C57BL6NJ_T0028314.1 MGP_C57BL6NJ_G0018388.1 mouse_genomes_project 11 2150620 2151717 + Rasl10a protein_coding processed_transcript MGP_C57BL6NJ_T0009874.1 MGP_C57BL6NJ_G0007959.1 mouse_genomes_project 11 54781375 54781433 - Mir7671 miRNA miRNA MGP_C57BL6NJ_T0030613.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72617136 72626676 + MGP_C57BL6NJ_P0030613 Dvl2 protein_coding protein_coding MGP_C57BL6NJ_T0030614.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72617158 72628866 + MGP_C57BL6NJ_P0030614 Dvl2 protein_coding protein_coding MGP_C57BL6NJ_T0030615.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72617362 72623526 + Dvl2 protein_coding retained_intron MGP_C57BL6NJ_T0030616.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72617376 72622578 + Dvl2 protein_coding retained_intron MGP_C57BL6NJ_T0030617.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72621999 72624038 + Dvl2 protein_coding retained_intron MGP_C57BL6NJ_T0030618.1 MGP_C57BL6NJ_G0018968.1 mouse_genomes_project 11 72623544 72624634 + Dvl2 protein_coding retained_intron MGP_C57BL6NJ_T0013094.1 MGP_C57BL6NJ_G0011139.1 mouse_genomes_project 11 129449024 129449835 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029397.1 MGP_C57BL6NJ_G0018661.1 mouse_genomes_project 11 52417001 52429631 - MGP_C57BL6NJ_P0029397 Rmnd5b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029398.1 MGP_C57BL6NJ_G0018661.1 mouse_genomes_project 11 52417003 52429880 - MGP_C57BL6NJ_P0029398 Rmnd5b protein_coding protein_coding MGP_C57BL6NJ_T0029399.1 MGP_C57BL6NJ_G0018661.1 mouse_genomes_project 11 52417369 52419165 - MGP_C57BL6NJ_P0029399 Rmnd5b protein_coding protein_coding MGP_C57BL6NJ_T0029400.1 MGP_C57BL6NJ_G0018661.1 mouse_genomes_project 11 52423319 52429737 - Rmnd5b protein_coding processed_transcript MGP_C57BL6NJ_T0009877.1 MGP_C57BL6NJ_G0007962.1 mouse_genomes_project 11 60612988 60613126 - Gm44313 miRNA miRNA MGP_C57BL6NJ_T0031583.1 MGP_C57BL6NJ_G0019199.1 mouse_genomes_project 11 83793943 83822126 + MGP_C57BL6NJ_P0031583 Adap2 protein_coding protein_coding MGP_C57BL6NJ_T0031584.1 MGP_C57BL6NJ_G0019199.1 mouse_genomes_project 11 83793954 83805833 + MGP_C57BL6NJ_P0031584 Adap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028443.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3736717 3751128 - MGP_C57BL6NJ_P0028443 Myo1g protein_coding protein_coding MGP_C57BL6NJ_T0028444.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3736843 3751067 - MGP_C57BL6NJ_P0028444 Myo1g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028445.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3738038 3738855 - Myo1g protein_coding retained_intron MGP_C57BL6NJ_T0028446.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3743133 3751128 - Myo1g protein_coding retained_intron MGP_C57BL6NJ_T0028447.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3744672 3745670 - Myo1g protein_coding retained_intron MGP_C57BL6NJ_T0028448.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3748167 3751135 - MGP_C57BL6NJ_P0028448 Myo1g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028449.1 MGP_C57BL6NJ_G0018418.1 mouse_genomes_project 11 3749216 3749674 - MGP_C57BL6NJ_P0028449 Myo1g protein_coding protein_coding MGP_C57BL6NJ_T0012887.1 MGP_C57BL6NJ_G0010932.1 mouse_genomes_project 11 46831558 46832135 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034271.1 MGP_C57BL6NJ_G0019850.1 mouse_genomes_project 11 125883953 125889484 - Tha1 protein_coding processed_transcript MGP_C57BL6NJ_T0034272.1 MGP_C57BL6NJ_G0019850.1 mouse_genomes_project 11 125883953 125889462 - MGP_C57BL6NJ_P0034272 Tha1 protein_coding protein_coding MGP_C57BL6NJ_T0034273.1 MGP_C57BL6NJ_G0019850.1 mouse_genomes_project 11 125885725 125887913 - Tha1 protein_coding processed_transcript MGP_C57BL6NJ_T0031155.1 MGP_C57BL6NJ_G0019104.1 mouse_genomes_project 11 78594316 78602263 + Tlcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0031156.1 MGP_C57BL6NJ_G0019104.1 mouse_genomes_project 11 78600686 78602927 + MGP_C57BL6NJ_P0031156 Tlcd2 protein_coding protein_coding MGP_C57BL6NJ_T0031157.1 MGP_C57BL6NJ_G0019104.1 mouse_genomes_project 11 78600686 78603169 + MGP_C57BL6NJ_P0031157 Tlcd2 protein_coding protein_coding MGP_C57BL6NJ_T0031158.1 MGP_C57BL6NJ_G0019104.1 mouse_genomes_project 11 78601318 78602667 + Tlcd2 protein_coding retained_intron MGP_C57BL6NJ_T0003422.1 MGP_C57BL6NJ_G0003150.1 mouse_genomes_project 11 101685378 101701175 - Hoxb5os antisense antisense MGP_C57BL6NJ_T0003423.1 MGP_C57BL6NJ_G0003150.1 mouse_genomes_project 11 101687837 101699346 - Hoxb5os antisense antisense MGP_C57BL6NJ_T0101007.1 MGP_C57BL6NJ_G0039053.1 mouse_genomes_project 11 754409 754508 + Gm24013 snoRNA snoRNA MGP_C57BL6NJ_T0017698.1 MGP_C57BL6NJ_G0015587.1 mouse_genomes_project 11 99182987 99207735 + B230206L02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017699.1 MGP_C57BL6NJ_G0015587.1 mouse_genomes_project 11 99183004 99207735 + B230206L02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017700.1 MGP_C57BL6NJ_G0015587.1 mouse_genomes_project 11 99185162 99188348 + B230206L02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029293.1 MGP_C57BL6NJ_G0018635.1 mouse_genomes_project 11 50889911 50926275 - MGP_C57BL6NJ_P0029293 Maml1 protein_coding protein_coding MGP_C57BL6NJ_T0030400.1 MGP_C57BL6NJ_G0018919.1 mouse_genomes_project 11 71860672 71867455 + MGP_C57BL6NJ_P0030400 Kcnab3 protein_coding protein_coding MGP_C57BL6NJ_T0030401.1 MGP_C57BL6NJ_G0018919.1 mouse_genomes_project 11 71862280 71867455 + Kcnab3 protein_coding retained_intron MGP_C57BL6NJ_T0030402.1 MGP_C57BL6NJ_G0018919.1 mouse_genomes_project 11 71864738 71866556 + Kcnab3 protein_coding retained_intron MGP_C57BL6NJ_T0033359.1 MGP_C57BL6NJ_G0019660.1 mouse_genomes_project 11 110139415 110161873 - MGP_C57BL6NJ_P0033359 Wnt9b protein_coding protein_coding MGP_C57BL6NJ_T0102153.1 MGP_C57BL6NJ_G0040182.1 mouse_genomes_project 11 93490477 93490823 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0033005.1 MGP_C57BL6NJ_G0019591.1 mouse_genomes_project 11 107554320 107560842 - MGP_C57BL6NJ_P0033005 Ptges3l protein_coding protein_coding MGP_C57BL6NJ_T0033006.1 MGP_C57BL6NJ_G0019591.1 mouse_genomes_project 11 107554320 107560178 - MGP_C57BL6NJ_P0033006 Ptges3l protein_coding protein_coding MGP_C57BL6NJ_T0033007.1 MGP_C57BL6NJ_G0019591.1 mouse_genomes_project 11 107556379 107560178 - MGP_C57BL6NJ_P0033007 Ptges3l protein_coding protein_coding MGP_C57BL6NJ_T0033008.1 MGP_C57BL6NJ_G0019591.1 mouse_genomes_project 11 107556926 107559365 - MGP_C57BL6NJ_P0033008 Ptges3l protein_coding protein_coding MGP_C57BL6NJ_T0033009.1 MGP_C57BL6NJ_G0019591.1 mouse_genomes_project 11 107557340 107559741 - Ptges3l protein_coding retained_intron MGP_C57BL6NJ_T0003417.1 MGP_C57BL6NJ_G0003146.1 mouse_genomes_project 11 100637995 100648248 - Gm29477 antisense antisense MGP_C57BL6NJ_T0030792.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73393027 - MGP_C57BL6NJ_P0030792 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030793.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73392894 - MGP_C57BL6NJ_P0030793 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030794.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73391311 - MGP_C57BL6NJ_P0030794 Camta2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030795.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73392865 - MGP_C57BL6NJ_P0030795 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030796.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73392875 - MGP_C57BL6NJ_P0030796 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030797.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372809 73392865 - MGP_C57BL6NJ_P0030797 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030798.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372810 73392877 - MGP_C57BL6NJ_P0030798 Camta2 protein_coding protein_coding MGP_C57BL6NJ_T0030799.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73372812 73388698 - Camta2 protein_coding retained_intron MGP_C57BL6NJ_T0030800.1 MGP_C57BL6NJ_G0019003.1 mouse_genomes_project 11 73390835 73392870 - Camta2 protein_coding retained_intron MGP_C57BL6NJ_T0017659.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61222549 61230531 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017660.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61222572 61227957 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017661.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61222984 61223740 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017662.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61223040 61226991 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017663.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61223555 61227043 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017664.1 MGP_C57BL6NJ_G0015568.1 mouse_genomes_project 11 61224528 61227957 + 4933439C10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029095.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44653106 44704899 + MGP_C57BL6NJ_P0029095 Rnf145 protein_coding protein_coding MGP_C57BL6NJ_T0029096.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44653125 44659718 + Rnf145 protein_coding processed_transcript MGP_C57BL6NJ_T0029097.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44654801 44694374 + MGP_C57BL6NJ_P0029097 Rnf145 protein_coding protein_coding MGP_C57BL6NJ_T0029098.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44655664 44688322 + Rnf145 protein_coding processed_transcript MGP_C57BL6NJ_T0029099.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44696227 44699434 + Rnf145 protein_coding processed_transcript MGP_C57BL6NJ_T0029100.1 MGP_C57BL6NJ_G0018577.1 mouse_genomes_project 11 44699415 44701374 + Rnf145 protein_coding processed_transcript MGP_C57BL6NJ_T0102758.1 MGP_C57BL6NJ_G0040553.1 mouse_genomes_project 11 99924805 99925593 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003319.1 MGP_C57BL6NJ_G0003068.1 mouse_genomes_project 11 56307592 56311882 + Slc36a3os antisense antisense MGP_C57BL6NJ_T0003519.1 MGP_C57BL6NJ_G0003226.1 mouse_genomes_project 11 128926782 128929441 + Notumos antisense antisense MGP_C57BL6NJ_T0006343.1 MGP_C57BL6NJ_G0005293.1 mouse_genomes_project 11 18446662 18447440 - Gm12031 lincRNA lincRNA MGP_C57BL6NJ_T0033702.1 MGP_C57BL6NJ_G0019737.1 mouse_genomes_project 11 117461917 117601753 + MGP_C57BL6NJ_P0033702 Map2k6 protein_coding protein_coding MGP_C57BL6NJ_T0033703.1 MGP_C57BL6NJ_G0019737.1 mouse_genomes_project 11 117461917 117589895 + MGP_C57BL6NJ_P0033703 Map2k6 protein_coding protein_coding MGP_C57BL6NJ_T0033704.1 MGP_C57BL6NJ_G0019737.1 mouse_genomes_project 11 117462054 117589895 + Map2k6 protein_coding processed_transcript MGP_C57BL6NJ_T0033705.1 MGP_C57BL6NJ_G0019737.1 mouse_genomes_project 11 117550626 117575796 + Map2k6 protein_coding processed_transcript MGP_C57BL6NJ_T0033706.1 MGP_C57BL6NJ_G0019737.1 mouse_genomes_project 11 117554528 117574200 + Map2k6 protein_coding processed_transcript MGP_C57BL6NJ_T0032865.1 MGP_C57BL6NJ_G0019561.1 mouse_genomes_project 11 106747401 106752327 - MGP_C57BL6NJ_P0032865 Ghdc protein_coding protein_coding MGP_C57BL6NJ_T0032866.1 MGP_C57BL6NJ_G0019561.1 mouse_genomes_project 11 106748180 106750083 - Ghdc protein_coding processed_transcript MGP_C57BL6NJ_T0032867.1 MGP_C57BL6NJ_G0019561.1 mouse_genomes_project 11 106751061 106752312 - MGP_C57BL6NJ_P0032867 Ghdc protein_coding protein_coding MGP_C57BL6NJ_T0029175.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49310311 49323400 + MGP_C57BL6NJ_P0029175 protein_coding protein_coding MGP_C57BL6NJ_T0029176.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49310317 49314278 + MGP_C57BL6NJ_P0029176 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029177.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49311360 49318392 + MGP_C57BL6NJ_P0029177 protein_coding protein_coding MGP_C57BL6NJ_T0029178.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49311650 49318449 + MGP_C57BL6NJ_P0029178 protein_coding protein_coding MGP_C57BL6NJ_T0029179.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49311683 49324001 + MGP_C57BL6NJ_P0029179 protein_coding protein_coding MGP_C57BL6NJ_T0029180.1 MGP_C57BL6NJ_G0018600.1 mouse_genomes_project 11 49320746 49325023 + protein_coding retained_intron MGP_C57BL6NJ_T0029772.1 MGP_C57BL6NJ_G0018781.1 mouse_genomes_project 11 60864917 60872176 - MGP_C57BL6NJ_P0029772 Gjc2 protein_coding protein_coding MGP_C57BL6NJ_T0029773.1 MGP_C57BL6NJ_G0018781.1 mouse_genomes_project 11 60864917 60872563 - MGP_C57BL6NJ_P0029773 Gjc2 protein_coding protein_coding MGP_C57BL6NJ_T0030322.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71489706 71514349 - MGP_C57BL6NJ_P0030322 Pfas protein_coding protein_coding MGP_C57BL6NJ_T0030323.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71489709 71498267 - Pfas protein_coding retained_intron MGP_C57BL6NJ_T0030324.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71490469 71494599 - Pfas protein_coding retained_intron MGP_C57BL6NJ_T0030325.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71491925 71495340 - MGP_C57BL6NJ_P0030325 Pfas protein_coding protein_coding MGP_C57BL6NJ_T0030326.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71494713 71495816 - Pfas protein_coding retained_intron MGP_C57BL6NJ_T0030327.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71496972 71503555 - MGP_C57BL6NJ_P0030327 Pfas protein_coding protein_coding MGP_C57BL6NJ_T0030328.1 MGP_C57BL6NJ_G0018904.1 mouse_genomes_project 11 71502844 71514340 - Pfas protein_coding retained_intron MGP_C57BL6NJ_T0029634.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56584432 56614154 - MGP_C57BL6NJ_P0029634 Sparc protein_coding protein_coding MGP_C57BL6NJ_T0029635.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56584432 56614336 - MGP_C57BL6NJ_P0029635 Sparc protein_coding protein_coding MGP_C57BL6NJ_T0029636.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56585318 56592307 - Sparc protein_coding processed_transcript MGP_C57BL6NJ_T0029637.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56585452 56594728 - Sparc protein_coding processed_transcript MGP_C57BL6NJ_T0029638.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56591984 56614154 - MGP_C57BL6NJ_P0029638 Sparc protein_coding protein_coding MGP_C57BL6NJ_T0029639.1 MGP_C57BL6NJ_G0018722.1 mouse_genomes_project 11 56601766 56614156 - Sparc protein_coding processed_transcript MGP_C57BL6NJ_T0034369.1 MGP_C57BL6NJ_G0019871.1 mouse_genomes_project 11 127459957 127500353 + MGP_C57BL6NJ_P0034369 Card14 protein_coding protein_coding MGP_C57BL6NJ_T0034370.1 MGP_C57BL6NJ_G0019871.1 mouse_genomes_project 11 127469057 127500353 + MGP_C57BL6NJ_P0034370 Card14 protein_coding protein_coding MGP_C57BL6NJ_T0034371.1 MGP_C57BL6NJ_G0019871.1 mouse_genomes_project 11 127476875 127500165 + Card14 protein_coding processed_transcript MGP_C57BL6NJ_T0034372.1 MGP_C57BL6NJ_G0019871.1 mouse_genomes_project 11 127479169 127500352 + Card14 protein_coding processed_transcript MGP_C57BL6NJ_T0034070.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123954109 123965769 - Acox1 protein_coding processed_transcript MGP_C57BL6NJ_T0034071.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123954109 123985210 - MGP_C57BL6NJ_P0034071 Acox1 protein_coding protein_coding MGP_C57BL6NJ_T0034072.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123954109 123985454 - MGP_C57BL6NJ_P0034072 Acox1 protein_coding protein_coding MGP_C57BL6NJ_T0034073.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123954109 123973078 - MGP_C57BL6NJ_P0034073 Acox1 protein_coding protein_coding MGP_C57BL6NJ_T0034074.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123957564 123964192 - Acox1 protein_coding processed_transcript MGP_C57BL6NJ_T0034075.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123961047 123965919 - Acox1 protein_coding processed_transcript MGP_C57BL6NJ_T0034076.1 MGP_C57BL6NJ_G0019811.1 mouse_genomes_project 11 123972531 123985138 - Acox1 protein_coding processed_transcript MGP_C57BL6NJ_T0031006.1 MGP_C57BL6NJ_G0019050.1 mouse_genomes_project 11 76201581 76236545 + MGP_C57BL6NJ_P0031006 Trpv3 protein_coding protein_coding MGP_C57BL6NJ_T0009922.1 MGP_C57BL6NJ_G0008007.1 mouse_genomes_project 11 90814775 90814867 - Mir21a miRNA miRNA MGP_C57BL6NJ_T0029251.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449843 50492214 + MGP_C57BL6NJ_P0029251 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029252.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449843 50492214 + MGP_C57BL6NJ_P0029252 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029253.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449843 50492214 + MGP_C57BL6NJ_P0029253 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029254.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449845 50492214 + MGP_C57BL6NJ_P0029254 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029255.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449863 50480135 + Mapk9 protein_coding processed_transcript MGP_C57BL6NJ_T0029256.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50449985 50477906 + Mapk9 protein_coding processed_transcript MGP_C57BL6NJ_T0029257.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50457305 50492204 + MGP_C57BL6NJ_P0029257 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029258.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50457322 50478834 + Mapk9 protein_coding processed_transcript MGP_C57BL6NJ_T0029259.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50457349 50489103 + MGP_C57BL6NJ_P0029259 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0029260.1 MGP_C57BL6NJ_G0018627.1 mouse_genomes_project 11 50457349 50489103 + MGP_C57BL6NJ_P0029260 Mapk9 protein_coding protein_coding MGP_C57BL6NJ_T0003429.1 MGP_C57BL6NJ_G0003155.1 mouse_genomes_project 11 102638117 102638803 + Gm11583 antisense antisense MGP_C57BL6NJ_T0033525.1 MGP_C57BL6NJ_G0019701.1 mouse_genomes_project 11 113175865 113301593 - MGP_C57BL6NJ_P0033525 Tex2 protein_coding protein_coding MGP_C57BL6NJ_T0033526.1 MGP_C57BL6NJ_G0019701.1 mouse_genomes_project 11 113177314 113254269 - MGP_C57BL6NJ_P0033526 Tex2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033527.1 MGP_C57BL6NJ_G0019701.1 mouse_genomes_project 11 113222787 113263144 - MGP_C57BL6NJ_P0033527 Tex2 protein_coding protein_coding MGP_C57BL6NJ_T0033528.1 MGP_C57BL6NJ_G0019701.1 mouse_genomes_project 11 113252221 113302086 - MGP_C57BL6NJ_P0033528 Tex2 protein_coding protein_coding MGP_C57BL6NJ_T0033529.1 MGP_C57BL6NJ_G0019701.1 mouse_genomes_project 11 113252606 113264631 - MGP_C57BL6NJ_P0033529 Tex2 protein_coding protein_coding MGP_C57BL6NJ_T0031729.1 MGP_C57BL6NJ_G0019240.1 mouse_genomes_project 11 87358172 87362480 + MGP_C57BL6NJ_P0031729 1700020L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0031730.1 MGP_C57BL6NJ_G0019240.1 mouse_genomes_project 11 87361533 87362075 + MGP_C57BL6NJ_P0031730 1700020L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0029294.1 MGP_C57BL6NJ_G0018636.1 mouse_genomes_project 11 50928174 50968057 - MGP_C57BL6NJ_P0029294 Canx protein_coding protein_coding MGP_C57BL6NJ_T0029295.1 MGP_C57BL6NJ_G0018636.1 mouse_genomes_project 11 50928680 50968057 - MGP_C57BL6NJ_P0029295 Canx protein_coding protein_coding MGP_C57BL6NJ_T0029296.1 MGP_C57BL6NJ_G0018636.1 mouse_genomes_project 11 50930412 50933592 - Canx protein_coding processed_transcript MGP_C57BL6NJ_T0029297.1 MGP_C57BL6NJ_G0018636.1 mouse_genomes_project 11 50931577 50932533 - Canx protein_coding processed_transcript MGP_C57BL6NJ_T0029298.1 MGP_C57BL6NJ_G0018636.1 mouse_genomes_project 11 50933051 50935204 - Canx protein_coding processed_transcript MGP_C57BL6NJ_T0033376.1 MGP_C57BL6NJ_G0019665.1 mouse_genomes_project 11 110635788 110638013 + MGP_C57BL6NJ_P0033376 Sppl2c protein_coding protein_coding MGP_C57BL6NJ_T0033377.1 MGP_C57BL6NJ_G0019665.1 mouse_genomes_project 11 110635788 110640583 + MGP_C57BL6NJ_P0033377 Sppl2c protein_coding protein_coding MGP_C57BL6NJ_T0028658.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20516466 20814390 - MGP_C57BL6NJ_P0028658 Ehbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028659.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20516466 20813433 - MGP_C57BL6NJ_P0028659 Ehbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028660.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20516466 20814390 - MGP_C57BL6NJ_P0028660 Ehbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028661.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20630016 20694478 - Ehbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0028662.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20668010 20813467 - MGP_C57BL6NJ_P0028662 Ehbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028663.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20690508 20692882 - Ehbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0028664.1 MGP_C57BL6NJ_G0018469.1 mouse_genomes_project 11 20761303 20866804 - Ehbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0034158.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515265 124519405 + MGP_C57BL6NJ_P0034158 1810032O08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034159.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515274 124519405 + MGP_C57BL6NJ_P0034159 1810032O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0034160.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515274 124519402 + MGP_C57BL6NJ_P0034160 1810032O08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034161.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515301 124516228 + 1810032O08Rik protein_coding retained_intron MGP_C57BL6NJ_T0034162.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515313 124518193 + MGP_C57BL6NJ_P0034162 1810032O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0034163.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124515486 124517580 + MGP_C57BL6NJ_P0034163 1810032O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0034164.1 MGP_C57BL6NJ_G0019828.1 mouse_genomes_project 11 124516297 124519406 + MGP_C57BL6NJ_P0034164 1810032O08Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034148.1 MGP_C57BL6NJ_G0019825.1 mouse_genomes_project 11 124419096 124459313 - MGP_C57BL6NJ_P0034148 Rhbdf2 protein_coding protein_coding MGP_C57BL6NJ_T0034149.1 MGP_C57BL6NJ_G0019825.1 mouse_genomes_project 11 124419100 124462132 - MGP_C57BL6NJ_P0034149 Rhbdf2 protein_coding protein_coding MGP_C57BL6NJ_T0034150.1 MGP_C57BL6NJ_G0019825.1 mouse_genomes_project 11 124422017 124423526 - Rhbdf2 protein_coding processed_transcript MGP_C57BL6NJ_T0034151.1 MGP_C57BL6NJ_G0019825.1 mouse_genomes_project 11 124424183 124459360 - Rhbdf2 protein_coding retained_intron MGP_C57BL6NJ_T0028269.1 MGP_C57BL6NJ_G0018378.1 mouse_genomes_project 11 1682500 1727351 + MGP_C57BL6NJ_P0028269 Ascc2 protein_coding protein_coding MGP_C57BL6NJ_T0028270.1 MGP_C57BL6NJ_G0018378.1 mouse_genomes_project 11 1682500 1729665 + MGP_C57BL6NJ_P0028270 Ascc2 protein_coding protein_coding MGP_C57BL6NJ_T0030906.1 MGP_C57BL6NJ_G0019022.1 mouse_genomes_project 11 75019911 75022800 - MGP_C57BL6NJ_P0030906 Gm43951 protein_coding protein_coding MGP_C57BL6NJ_T0031508.1 MGP_C57BL6NJ_G0019178.1 mouse_genomes_project 11 82025059 82032158 + MGP_C57BL6NJ_P0031508 Ift20 protein_coding protein_coding MGP_C57BL6NJ_T0031509.1 MGP_C57BL6NJ_G0019178.1 mouse_genomes_project 11 82025126 82030075 + MGP_C57BL6NJ_P0031509 Ift20 protein_coding protein_coding MGP_C57BL6NJ_T0031510.1 MGP_C57BL6NJ_G0019178.1 mouse_genomes_project 11 82025141 82030182 + MGP_C57BL6NJ_P0031510 Ift20 protein_coding protein_coding MGP_C57BL6NJ_T0031511.1 MGP_C57BL6NJ_G0019178.1 mouse_genomes_project 11 82025143 82030182 + Ift20 protein_coding retained_intron MGP_C57BL6NJ_T0031512.1 MGP_C57BL6NJ_G0019178.1 mouse_genomes_project 11 82025171 82030182 + Ift20 protein_coding retained_intron MGP_C57BL6NJ_T0012828.1 MGP_C57BL6NJ_G0010873.1 mouse_genomes_project 11 21315647 21317074 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012877.1 MGP_C57BL6NJ_G0010922.1 mouse_genomes_project 11 41510581 41511494 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101021.1 MGP_C57BL6NJ_G0039067.1 mouse_genomes_project 11 21409217 21409319 + Gm23772 snoRNA snoRNA MGP_C57BL6NJ_T0031570.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83671359 83707931 - MGP_C57BL6NJ_P0031570 Crlf3 protein_coding protein_coding MGP_C57BL6NJ_T0031571.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83672350 83707948 - MGP_C57BL6NJ_P0031571 Crlf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031572.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83672350 83707931 - MGP_C57BL6NJ_P0031572 Crlf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031573.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83680964 83707955 - Crlf3 protein_coding processed_transcript MGP_C57BL6NJ_T0031574.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83681086 83682769 - Crlf3 protein_coding retained_intron MGP_C57BL6NJ_T0031575.1 MGP_C57BL6NJ_G0019196.1 mouse_genomes_project 11 83684181 83707880 - MGP_C57BL6NJ_P0031575 Crlf3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099750.1 MGP_C57BL6NJ_G0037796.1 mouse_genomes_project 11 40901390 40901546 - Gm24446 snRNA snRNA MGP_C57BL6NJ_T0033715.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120558305 120907874 - MGP_C57BL6NJ_P0033715 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033716.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120558305 120907862 - MGP_C57BL6NJ_P0033716 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033717.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120558305 120907865 - MGP_C57BL6NJ_P0033717 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033718.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120700997 121002064 - MGP_C57BL6NJ_P0033718 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033719.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120799071 120907885 - MGP_C57BL6NJ_P0033719 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033720.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120864130 121002072 - MGP_C57BL6NJ_P0033720 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033721.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120901614 121002063 - MGP_C57BL6NJ_P0033721 Slc39a11 protein_coding protein_coding MGP_C57BL6NJ_T0033722.1 MGP_C57BL6NJ_G0019741.1 mouse_genomes_project 11 120919660 121002063 - Slc39a11 protein_coding processed_transcript MGP_C57BL6NJ_T0032793.1 MGP_C57BL6NJ_G0019545.1 mouse_genomes_project 11 106379714 106392793 + MGP_C57BL6NJ_P0032793 Fkbp10 protein_coding protein_coding MGP_C57BL6NJ_T0032794.1 MGP_C57BL6NJ_G0019545.1 mouse_genomes_project 11 106379783 106392081 + MGP_C57BL6NJ_P0032794 Fkbp10 protein_coding protein_coding MGP_C57BL6NJ_T0032795.1 MGP_C57BL6NJ_G0019545.1 mouse_genomes_project 11 106379862 106390058 + MGP_C57BL6NJ_P0032795 Fkbp10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032796.1 MGP_C57BL6NJ_G0019545.1 mouse_genomes_project 11 106388392 106389665 + Fkbp10 protein_coding retained_intron MGP_C57BL6NJ_T0032799.1 MGP_C57BL6NJ_G0019545.1 mouse_genomes_project 11 106391006 106392269 + Fkbp10 protein_coding retained_intron MGP_C57BL6NJ_T0034684.1 MGP_C57BL6NJ_G0019930.1 mouse_genomes_project 11 129494559 129496736 + MGP_C57BL6NJ_P0034684 Tex19.1 protein_coding protein_coding MGP_C57BL6NJ_T0034685.1 MGP_C57BL6NJ_G0019930.1 mouse_genomes_project 11 129494573 129495284 + MGP_C57BL6NJ_P0034685 Tex19.1 protein_coding protein_coding MGP_C57BL6NJ_T0031046.1 MGP_C57BL6NJ_G0019073.1 mouse_genomes_project 11 77047454 77059681 - MGP_C57BL6NJ_P0031046 Olfr139 protein_coding protein_coding MGP_C57BL6NJ_T0031047.1 MGP_C57BL6NJ_G0019073.1 mouse_genomes_project 11 77047454 77048402 - MGP_C57BL6NJ_P0031047 Olfr139 protein_coding protein_coding MGP_C57BL6NJ_T0031048.1 MGP_C57BL6NJ_G0019073.1 mouse_genomes_project 11 77053565 77057163 - Olfr139 protein_coding processed_transcript MGP_C57BL6NJ_T0030095.1 MGP_C57BL6NJ_G0018846.1 mouse_genomes_project 11 64460759 64523285 + MGP_C57BL6NJ_P0030095 Pigl protein_coding protein_coding MGP_C57BL6NJ_T0030096.1 MGP_C57BL6NJ_G0018846.1 mouse_genomes_project 11 64460907 64520107 + Pigl protein_coding processed_transcript MGP_C57BL6NJ_T0098808.1 MGP_C57BL6NJ_G0036872.1 mouse_genomes_project 11 76325700 76326650 - pseudogene pseudogene MGP_C57BL6NJ_T0034412.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128135757 128204106 + MGP_C57BL6NJ_P0034412 Baiap2 protein_coding protein_coding MGP_C57BL6NJ_T0034413.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128135757 128204106 + MGP_C57BL6NJ_P0034413 Baiap2 protein_coding protein_coding MGP_C57BL6NJ_T0034414.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128135757 128199945 + MGP_C57BL6NJ_P0034414 Baiap2 protein_coding protein_coding MGP_C57BL6NJ_T0034415.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128135757 128199945 + MGP_C57BL6NJ_P0034415 Baiap2 protein_coding protein_coding MGP_C57BL6NJ_T0034416.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128135757 128199945 + MGP_C57BL6NJ_P0034416 Baiap2 protein_coding protein_coding MGP_C57BL6NJ_T0034417.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128136110 128153534 + Baiap2 protein_coding processed_transcript MGP_C57BL6NJ_T0034418.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128136466 128178685 + Baiap2 protein_coding processed_transcript MGP_C57BL6NJ_T0034419.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128153022 128153389 + Baiap2 protein_coding processed_transcript MGP_C57BL6NJ_T0034420.1 MGP_C57BL6NJ_G0019879.1 mouse_genomes_project 11 128194973 128199523 + Baiap2 protein_coding processed_transcript MGP_C57BL6NJ_T0012986.1 MGP_C57BL6NJ_G0011031.1 mouse_genomes_project 11 82055836 82056118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029087.1 MGP_C57BL6NJ_G0018575.1 mouse_genomes_project 11 44519391 44533338 + MGP_C57BL6NJ_P0029087 Il12b protein_coding protein_coding MGP_C57BL6NJ_T0029088.1 MGP_C57BL6NJ_G0018575.1 mouse_genomes_project 11 44519391 44533361 + MGP_C57BL6NJ_P0029088 Il12b protein_coding protein_coding MGP_C57BL6NJ_T0006407.1 MGP_C57BL6NJ_G0005348.1 mouse_genomes_project 11 60501151 60502341 + Gm12259 lincRNA lincRNA MGP_C57BL6NJ_T0012969.1 MGP_C57BL6NJ_G0011014.1 mouse_genomes_project 11 75711376 75713296 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101059.1 MGP_C57BL6NJ_G0039105.1 mouse_genomes_project 11 81634933 81635004 - Snord4a snoRNA snoRNA MGP_C57BL6NJ_T0031810.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909305 88949594 - MGP_C57BL6NJ_P0031810 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031811.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909305 88949543 - MGP_C57BL6NJ_P0031811 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031812.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909305 88949622 - MGP_C57BL6NJ_P0031812 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031813.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909750 88949031 - MGP_C57BL6NJ_P0031813 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031814.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909805 88949451 - MGP_C57BL6NJ_P0031814 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031815.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909916 88949545 - MGP_C57BL6NJ_P0031815 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031816.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88909954 88949487 - MGP_C57BL6NJ_P0031816 Ggnbp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031817.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88911080 88914154 - MGP_C57BL6NJ_P0031817 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031818.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88911456 88949530 - MGP_C57BL6NJ_P0031818 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031819.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88914106 88915670 - Ggnbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0031820.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88931016 88937323 - Ggnbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0031821.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88932569 88939488 - Ggnbp2 protein_coding retained_intron MGP_C57BL6NJ_T0031822.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88939547 88949296 - MGP_C57BL6NJ_P0031822 Ggnbp2 protein_coding protein_coding MGP_C57BL6NJ_T0031823.1 MGP_C57BL6NJ_G0019265.1 mouse_genomes_project 11 88947708 88949584 - Ggnbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0012776.1 MGP_C57BL6NJ_G0010821.1 mouse_genomes_project 11 7207835 7208305 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031626.1 MGP_C57BL6NJ_G0019206.1 mouse_genomes_project 11 84135543 84139705 + MGP_C57BL6NJ_P0031626 Cdk5r1 protein_coding protein_coding MGP_C57BL6NJ_T0031627.1 MGP_C57BL6NJ_G0019206.1 mouse_genomes_project 11 84135576 84136444 + MGP_C57BL6NJ_P0031627 Cdk5r1 protein_coding protein_coding MGP_C57BL6NJ_T0003302.1 MGP_C57BL6NJ_G0003053.1 mouse_genomes_project 11 50756186 50757109 - Gm12195 antisense antisense MGP_C57BL6NJ_T0006484.1 MGP_C57BL6NJ_G0005404.1 mouse_genomes_project 11 100899575 100906752 + Gm11528 lincRNA lincRNA MGP_C57BL6NJ_T0030349.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586379 71588604 + MGP_C57BL6NJ_P0030349 Tmem107 protein_coding protein_coding MGP_C57BL6NJ_T0030350.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586384 71588867 + MGP_C57BL6NJ_P0030350 Tmem107 protein_coding protein_coding MGP_C57BL6NJ_T0030351.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586386 71588397 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030352.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586427 71587077 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030353.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586446 71588835 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030354.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586491 71588598 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030355.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586509 71588390 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030356.1 MGP_C57BL6NJ_G0018908.1 mouse_genomes_project 11 71586875 71588134 + Tmem107 protein_coding processed_transcript MGP_C57BL6NJ_T0030009.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63420183 63427971 + MGP_C57BL6NJ_P0030009 B9d1 protein_coding protein_coding MGP_C57BL6NJ_T0030010.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63420242 63427971 + B9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0030011.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63420291 63423468 + B9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0030012.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63420294 63427971 + B9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0030013.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63424155 63427971 + MGP_C57BL6NJ_P0030013 B9d1 protein_coding protein_coding MGP_C57BL6NJ_T0030014.1 MGP_C57BL6NJ_G0018833.1 mouse_genomes_project 11 63427354 63427971 + B9d1 protein_coding processed_transcript MGP_C57BL6NJ_T0012953.1 MGP_C57BL6NJ_G0010998.1 mouse_genomes_project 11 70514392 70514777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032422.1 MGP_C57BL6NJ_G0019414.1 mouse_genomes_project 11 102496501 102503297 - MGP_C57BL6NJ_P0032422 Lrrc46 protein_coding protein_coding MGP_C57BL6NJ_T0017751.1 MGP_C57BL6NJ_G0015614.1 mouse_genomes_project 11 125594468 125597079 + 2900041M22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0003454.1 MGP_C57BL6NJ_G0003175.1 mouse_genomes_project 11 108368396 108369094 - Gm11586 antisense antisense MGP_C57BL6NJ_T0017610.1 MGP_C57BL6NJ_G0015542.1 mouse_genomes_project 11 482454 483124 + Gm11947 processed_transcript processed_transcript MGP_C57BL6NJ_T0031646.1 MGP_C57BL6NJ_G0019218.1 mouse_genomes_project 11 85932062 86066188 - Ccl1 protein_coding processed_transcript MGP_C57BL6NJ_T0031647.1 MGP_C57BL6NJ_G0019218.1 mouse_genomes_project 11 85932062 85935202 - MGP_C57BL6NJ_P0031647 Ccl1 protein_coding protein_coding MGP_C57BL6NJ_T0031648.1 MGP_C57BL6NJ_G0019218.1 mouse_genomes_project 11 85932064 85935202 - MGP_C57BL6NJ_P0031648 Ccl1 protein_coding protein_coding MGP_C57BL6NJ_T0003435.1 MGP_C57BL6NJ_G0003161.1 mouse_genomes_project 11 104504064 104516436 - Gm12359 antisense antisense MGP_C57BL6NJ_T0003436.1 MGP_C57BL6NJ_G0003161.1 mouse_genomes_project 11 104504666 104516436 - Gm12359 antisense antisense MGP_C57BL6NJ_T0003437.1 MGP_C57BL6NJ_G0003161.1 mouse_genomes_project 11 104511014 104516407 - Gm12359 antisense antisense MGP_C57BL6NJ_T0009885.1 MGP_C57BL6NJ_G0007970.1 mouse_genomes_project 11 67955660 67955760 - Mir744 miRNA miRNA MGP_C57BL6NJ_T0034227.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125639172 125764459 + MGP_C57BL6NJ_P0034227 Tnrc6c protein_coding protein_coding MGP_C57BL6NJ_T0034228.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125639456 125764450 + Tnrc6c protein_coding retained_intron MGP_C57BL6NJ_T0034229.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125639696 125764461 + MGP_C57BL6NJ_P0034229 Tnrc6c protein_coding protein_coding MGP_C57BL6NJ_T0034230.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125711578 125761996 + MGP_C57BL6NJ_P0034230 Tnrc6c protein_coding protein_coding MGP_C57BL6NJ_T0034231.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125732899 125747022 + Tnrc6c protein_coding retained_intron MGP_C57BL6NJ_T0034232.1 MGP_C57BL6NJ_G0019840.1 mouse_genomes_project 11 125746951 125749029 + Tnrc6c protein_coding retained_intron MGP_C57BL6NJ_T0028665.1 MGP_C57BL6NJ_G0018470.1 mouse_genomes_project 11 21052443 21060426 + MGP_C57BL6NJ_P0028665 Tmem17 protein_coding protein_coding MGP_C57BL6NJ_T0102770.1 MGP_C57BL6NJ_G0040565.1 mouse_genomes_project 11 107467789 107468693 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009926.1 MGP_C57BL6NJ_G0008011.1 mouse_genomes_project 11 92812762 92812854 + Mir378b miRNA miRNA MGP_C57BL6NJ_T0098957.1 MGP_C57BL6NJ_G0037021.1 mouse_genomes_project 11 21645462 21645562 - Gm23740 rRNA rRNA MGP_C57BL6NJ_T0009960.1 MGP_C57BL6NJ_G0008045.1 mouse_genomes_project 11 123111526 123111626 - Mir3968 miRNA miRNA MGP_C57BL6NJ_T0006410.1 MGP_C57BL6NJ_G0005351.1 mouse_genomes_project 11 61876803 61879815 - 4930412M03Rik lincRNA lincRNA MGP_C57BL6NJ_T0031824.1 MGP_C57BL6NJ_G0019266.1 mouse_genomes_project 11 88956638 88960515 - MGP_C57BL6NJ_P0031824 Pigw protein_coding protein_coding MGP_C57BL6NJ_T0031825.1 MGP_C57BL6NJ_G0019266.1 mouse_genomes_project 11 88957166 88960605 - MGP_C57BL6NJ_P0031825 Pigw protein_coding protein_coding MGP_C57BL6NJ_T0031485.1 MGP_C57BL6NJ_G0019172.1 mouse_genomes_project 11 81956660 81984746 - MGP_C57BL6NJ_P0031485 Sarm1 protein_coding protein_coding MGP_C57BL6NJ_T0031486.1 MGP_C57BL6NJ_G0019172.1 mouse_genomes_project 11 81957543 81969509 - Sarm1 protein_coding retained_intron MGP_C57BL6NJ_T0031487.1 MGP_C57BL6NJ_G0019172.1 mouse_genomes_project 11 81957621 81985038 - MGP_C57BL6NJ_P0031487 Sarm1 protein_coding protein_coding MGP_C57BL6NJ_T0031488.1 MGP_C57BL6NJ_G0019172.1 mouse_genomes_project 11 81968544 81973006 - Sarm1 protein_coding retained_intron MGP_C57BL6NJ_T0031489.1 MGP_C57BL6NJ_G0019172.1 mouse_genomes_project 11 81976665 81984970 - Sarm1 protein_coding processed_transcript MGP_C57BL6NJ_T0032684.1 MGP_C57BL6NJ_G0019475.1 mouse_genomes_project 11 104837365 104860919 - MGP_C57BL6NJ_P0032684 Tns4 protein_coding protein_coding MGP_C57BL6NJ_T0032685.1 MGP_C57BL6NJ_G0019475.1 mouse_genomes_project 11 104839864 104845558 - Tns4 protein_coding processed_transcript MGP_C57BL6NJ_T0032686.1 MGP_C57BL6NJ_G0019475.1 mouse_genomes_project 11 104842377 104847035 - Tns4 protein_coding retained_intron MGP_C57BL6NJ_T0032687.1 MGP_C57BL6NJ_G0019475.1 mouse_genomes_project 11 104857083 104860898 - Tns4 protein_coding retained_intron MGP_C57BL6NJ_T0031275.1 MGP_C57BL6NJ_G0019129.1 mouse_genomes_project 11 80026396 80063542 - MGP_C57BL6NJ_P0031275 Gosr1 protein_coding protein_coding MGP_C57BL6NJ_T0031276.1 MGP_C57BL6NJ_G0019129.1 mouse_genomes_project 11 80048288 80063530 - Gosr1 protein_coding processed_transcript MGP_C57BL6NJ_T0013028.1 MGP_C57BL6NJ_G0011073.1 mouse_genomes_project 11 102227677 102228064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032698.1 MGP_C57BL6NJ_G0019480.1 mouse_genomes_project 11 105106159 105114843 - MGP_C57BL6NJ_P0032698 Krt25 protein_coding protein_coding MGP_C57BL6NJ_T0009891.1 MGP_C57BL6NJ_G0007976.1 mouse_genomes_project 11 72242807 72242890 + Mir1934 miRNA miRNA MGP_C57BL6NJ_T0000981.1 MGP_C57BL6NJ_G0000891.1 mouse_genomes_project 11 101346687 101347510 - TEC TEC MGP_C57BL6NJ_T0033827.1 MGP_C57BL6NJ_G0019768.1 mouse_genomes_project 11 122829795 122895148 + MGP_C57BL6NJ_P0033827 Tmem104 protein_coding protein_coding MGP_C57BL6NJ_T0033828.1 MGP_C57BL6NJ_G0019768.1 mouse_genomes_project 11 122829795 122895148 + MGP_C57BL6NJ_P0033828 Tmem104 protein_coding protein_coding MGP_C57BL6NJ_T0033829.1 MGP_C57BL6NJ_G0019768.1 mouse_genomes_project 11 122829819 122842556 + Tmem104 protein_coding processed_transcript MGP_C57BL6NJ_T0033830.1 MGP_C57BL6NJ_G0019768.1 mouse_genomes_project 11 122829859 122893889 + Tmem104 protein_coding processed_transcript MGP_C57BL6NJ_T0032219.1 MGP_C57BL6NJ_G0019358.1 mouse_genomes_project 11 99799013 99809106 + MGP_C57BL6NJ_P0032219 Mrpl27 protein_coding protein_coding MGP_C57BL6NJ_T0032220.1 MGP_C57BL6NJ_G0019358.1 mouse_genomes_project 11 99799022 99808935 + Mrpl27 protein_coding processed_transcript MGP_C57BL6NJ_T0032221.1 MGP_C57BL6NJ_G0019358.1 mouse_genomes_project 11 99799257 99808638 + Mrpl27 protein_coding processed_transcript MGP_C57BL6NJ_T0032222.1 MGP_C57BL6NJ_G0019358.1 mouse_genomes_project 11 99799277 99808734 + Mrpl27 protein_coding processed_transcript MGP_C57BL6NJ_T0012794.1 MGP_C57BL6NJ_G0010839.1 mouse_genomes_project 11 15020082 15024311 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031788.1 MGP_C57BL6NJ_G0019260.1 mouse_genomes_project 11 88140993 88175018 - MGP_C57BL6NJ_P0031788 Gm11437 protein_coding protein_coding MGP_C57BL6NJ_T0013014.1 MGP_C57BL6NJ_G0011059.1 mouse_genomes_project 11 92792361 92792686 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029330.1 MGP_C57BL6NJ_G0018642.1 mouse_genomes_project 11 51496929 51505133 - MGP_C57BL6NJ_P0029330 Zfp879 protein_coding protein_coding MGP_C57BL6NJ_T0006446.1 MGP_C57BL6NJ_G0005380.1 mouse_genomes_project 11 81925907 81926702 + Gm11195 lincRNA lincRNA MGP_C57BL6NJ_T0011574.1 MGP_C57BL6NJ_G0009659.1 mouse_genomes_project 11 108723612 108723863 - Gm23563 misc_RNA misc_RNA MGP_C57BL6NJ_T0101057.1 MGP_C57BL6NJ_G0039103.1 mouse_genomes_project 11 81053987 81054119 - Gm23132 snoRNA snoRNA MGP_C57BL6NJ_T0029563.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55428009 55494155 + MGP_C57BL6NJ_P0029563 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029564.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55428216 55490934 + MGP_C57BL6NJ_P0029564 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029565.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55428233 55449881 + MGP_C57BL6NJ_P0029565 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029566.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55428413 55490938 + MGP_C57BL6NJ_P0029566 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029567.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55428413 55494151 + MGP_C57BL6NJ_P0029567 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029568.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55437885 55449328 + MGP_C57BL6NJ_P0029568 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029569.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55439116 55490596 + MGP_C57BL6NJ_P0029569 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029570.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55439156 55490934 + MGP_C57BL6NJ_P0029570 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029571.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55439156 55490934 + MGP_C57BL6NJ_P0029571 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029572.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55439208 55466674 + MGP_C57BL6NJ_P0029572 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029573.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55439208 55465115 + MGP_C57BL6NJ_P0029573 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029574.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55444076 55490900 + MGP_C57BL6NJ_P0029574 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029575.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55444372 55466458 + MGP_C57BL6NJ_P0029575 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0029576.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55462883 55490938 + Acsl6 protein_coding processed_transcript MGP_C57BL6NJ_T0029577.1 MGP_C57BL6NJ_G0018706.1 mouse_genomes_project 11 55473274 55490927 + MGP_C57BL6NJ_P0029577 Acsl6 protein_coding protein_coding MGP_C57BL6NJ_T0017715.1 MGP_C57BL6NJ_G0015596.1 mouse_genomes_project 11 103182671 103200651 - Gm11613 processed_transcript processed_transcript MGP_C57BL6NJ_T0034527.1 MGP_C57BL6NJ_G0019900.1 mouse_genomes_project 11 128802890 128804044 - MGP_C57BL6NJ_P0034527 Ppp1r27 protein_coding protein_coding MGP_C57BL6NJ_T0028230.1 MGP_C57BL6NJ_G0018369.1 mouse_genomes_project 11 1148184 1154155 + MGP_C57BL6NJ_P0028230 Rnf215 protein_coding protein_coding MGP_C57BL6NJ_T0028231.1 MGP_C57BL6NJ_G0018369.1 mouse_genomes_project 11 1148196 1150351 + MGP_C57BL6NJ_P0028231 Rnf215 protein_coding protein_coding MGP_C57BL6NJ_T0028232.1 MGP_C57BL6NJ_G0018369.1 mouse_genomes_project 11 1148264 1150200 + MGP_C57BL6NJ_P0028232 Rnf215 protein_coding protein_coding MGP_C57BL6NJ_T0028233.1 MGP_C57BL6NJ_G0018369.1 mouse_genomes_project 11 1148484 1150138 + Rnf215 protein_coding processed_transcript MGP_C57BL6NJ_T0030413.1 MGP_C57BL6NJ_G0018921.1 mouse_genomes_project 11 71905097 71910455 + MGP_C57BL6NJ_P0030413 Gm17305 protein_coding protein_coding MGP_C57BL6NJ_T0099795.1 MGP_C57BL6NJ_G0037841.1 mouse_genomes_project 11 104678992 104679099 + Gm22061 snRNA snRNA MGP_C57BL6NJ_T0013006.1 MGP_C57BL6NJ_G0011051.1 mouse_genomes_project 11 89341507 89341965 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030432.1 MGP_C57BL6NJ_G0018928.1 mouse_genomes_project 11 72132262 72134427 - Wrap53 protein_coding processed_transcript MGP_C57BL6NJ_T0030433.1 MGP_C57BL6NJ_G0018928.1 mouse_genomes_project 11 72132263 72151454 - MGP_C57BL6NJ_P0030433 Wrap53 protein_coding protein_coding MGP_C57BL6NJ_T0030434.1 MGP_C57BL6NJ_G0018928.1 mouse_genomes_project 11 72149837 72152385 - MGP_C57BL6NJ_P0030434 Wrap53 protein_coding protein_coding MGP_C57BL6NJ_T0009965.1 MGP_C57BL6NJ_G0008050.1 mouse_genomes_project 11 126956285 126956351 - Gm25040 miRNA miRNA MGP_C57BL6NJ_T0012974.1 MGP_C57BL6NJ_G0011019.1 mouse_genomes_project 11 77084526 77085148 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029944.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62794131 62815657 + MGP_C57BL6NJ_P0029944 Map2k3 protein_coding protein_coding MGP_C57BL6NJ_T0029945.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62794152 62809648 + Map2k3 protein_coding retained_intron MGP_C57BL6NJ_T0029946.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62794152 62804165 + Map2k3 protein_coding retained_intron MGP_C57BL6NJ_T0029947.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62794164 62815640 + MGP_C57BL6NJ_P0029947 Map2k3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029948.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62803928 62808828 + Map2k3 protein_coding processed_transcript MGP_C57BL6NJ_T0029949.1 MGP_C57BL6NJ_G0018822.1 mouse_genomes_project 11 62813507 62814667 + Map2k3 protein_coding retained_intron MGP_C57BL6NJ_T0029774.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60873224 60881302 - MGP_C57BL6NJ_P0029774 Guk1 protein_coding protein_coding MGP_C57BL6NJ_T0029775.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60873396 60877091 - MGP_C57BL6NJ_P0029775 Guk1 protein_coding protein_coding MGP_C57BL6NJ_T0029776.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60873459 60874805 - Guk1 protein_coding retained_intron MGP_C57BL6NJ_T0029777.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60873505 60874204 - Guk1 protein_coding retained_intron MGP_C57BL6NJ_T0029778.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60875531 60881162 - Guk1 protein_coding retained_intron MGP_C57BL6NJ_T0029779.1 MGP_C57BL6NJ_G0018782.1 mouse_genomes_project 11 60876141 60881563 - MGP_C57BL6NJ_P0029779 Guk1 protein_coding protein_coding MGP_C57BL6NJ_T0030377.1 MGP_C57BL6NJ_G0018915.1 mouse_genomes_project 11 71709210 71723142 - MGP_C57BL6NJ_P0030377 Alox8 protein_coding protein_coding MGP_C57BL6NJ_T0030378.1 MGP_C57BL6NJ_G0018915.1 mouse_genomes_project 11 71710368 71723108 - MGP_C57BL6NJ_P0030378 Alox8 protein_coding protein_coding MGP_C57BL6NJ_T0030379.1 MGP_C57BL6NJ_G0018915.1 mouse_genomes_project 11 71715170 71723110 - Alox8 protein_coding retained_intron MGP_C57BL6NJ_T0030380.1 MGP_C57BL6NJ_G0018915.1 mouse_genomes_project 11 71716835 71722683 - Alox8 protein_coding retained_intron MGP_C57BL6NJ_T0101073.1 MGP_C57BL6NJ_G0039119.1 mouse_genomes_project 11 95536018 95536155 - Gm22762 snoRNA snoRNA MGP_C57BL6NJ_T0101066.1 MGP_C57BL6NJ_G0039112.1 mouse_genomes_project 11 91736481 91770801 + snoRNA snoRNA MGP_C57BL6NJ_T0032342.1 MGP_C57BL6NJ_G0019395.1 mouse_genomes_project 11 101671864 101679698 + MGP_C57BL6NJ_P0032342 Hoxb8 protein_coding protein_coding MGP_C57BL6NJ_T0032343.1 MGP_C57BL6NJ_G0019395.1 mouse_genomes_project 11 101672515 101678698 + MGP_C57BL6NJ_P0032343 Hoxb8 protein_coding protein_coding MGP_C57BL6NJ_T0032344.1 MGP_C57BL6NJ_G0019395.1 mouse_genomes_project 11 101672684 101679076 + MGP_C57BL6NJ_P0032344 Hoxb8 protein_coding protein_coding MGP_C57BL6NJ_T0006537.1 MGP_C57BL6NJ_G0005442.1 mouse_genomes_project 11 125497989 125508381 + Gm11734 lincRNA lincRNA MGP_C57BL6NJ_T0029546.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55212560 55228293 + MGP_C57BL6NJ_P0029546 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029547.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213389 55245986 + MGP_C57BL6NJ_P0029547 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029548.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213428 55242096 + P4ha2 protein_coding retained_intron MGP_C57BL6NJ_T0029549.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213428 55245986 + MGP_C57BL6NJ_P0029549 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029550.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213440 55225744 + P4ha2 protein_coding retained_intron MGP_C57BL6NJ_T0029551.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213440 55245996 + MGP_C57BL6NJ_P0029551 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029552.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213445 55224423 + MGP_C57BL6NJ_P0029552 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029553.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213456 55225672 + MGP_C57BL6NJ_P0029553 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029554.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213533 55225683 + MGP_C57BL6NJ_P0029554 P4ha2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029555.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55213710 55225683 + MGP_C57BL6NJ_P0029555 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029556.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55221428 55228383 + MGP_C57BL6NJ_P0029556 P4ha2 protein_coding protein_coding MGP_C57BL6NJ_T0029557.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55225129 55234355 + MGP_C57BL6NJ_P0029557 P4ha2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029558.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55227311 55228383 + P4ha2 protein_coding processed_transcript MGP_C57BL6NJ_T0029559.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55239006 55240396 + P4ha2 protein_coding retained_intron MGP_C57BL6NJ_T0029560.1 MGP_C57BL6NJ_G0018703.1 mouse_genomes_project 11 55242026 55245999 + P4ha2 protein_coding retained_intron MGP_C57BL6NJ_T0031920.1 MGP_C57BL6NJ_G0019285.1 mouse_genomes_project 11 90917996 90927703 + MGP_C57BL6NJ_P0031920 Ptrh2 protein_coding protein_coding MGP_C57BL6NJ_T0031921.1 MGP_C57BL6NJ_G0019285.1 mouse_genomes_project 11 90917996 90927703 + MGP_C57BL6NJ_P0031921 Ptrh2 protein_coding protein_coding MGP_C57BL6NJ_T0033744.1 MGP_C57BL6NJ_G0019747.1 mouse_genomes_project 11 121087690 121114867 - MGP_C57BL6NJ_P0033744 Cdc42ep4 protein_coding protein_coding MGP_C57BL6NJ_T0033745.1 MGP_C57BL6NJ_G0019747.1 mouse_genomes_project 11 121087692 121115430 - MGP_C57BL6NJ_P0033745 Cdc42ep4 protein_coding protein_coding MGP_C57BL6NJ_T0033746.1 MGP_C57BL6NJ_G0019747.1 mouse_genomes_project 11 121089823 121100210 - MGP_C57BL6NJ_P0033746 Cdc42ep4 protein_coding protein_coding MGP_C57BL6NJ_T0033747.1 MGP_C57BL6NJ_G0019747.1 mouse_genomes_project 11 121090145 121114703 - MGP_C57BL6NJ_P0033747 Cdc42ep4 protein_coding protein_coding MGP_C57BL6NJ_T0029124.1 MGP_C57BL6NJ_G0018585.1 mouse_genomes_project 11 46438471 46568623 - MGP_C57BL6NJ_P0029124 Cyfip2 protein_coding protein_coding MGP_C57BL6NJ_T0029125.1 MGP_C57BL6NJ_G0018585.1 mouse_genomes_project 11 46438471 46568122 - MGP_C57BL6NJ_P0029125 Cyfip2 protein_coding protein_coding MGP_C57BL6NJ_T0029126.1 MGP_C57BL6NJ_G0018585.1 mouse_genomes_project 11 46438476 46568058 - MGP_C57BL6NJ_P0029126 Cyfip2 protein_coding protein_coding MGP_C57BL6NJ_T0029127.1 MGP_C57BL6NJ_G0018585.1 mouse_genomes_project 11 46440692 46520664 - MGP_C57BL6NJ_P0029127 Cyfip2 protein_coding protein_coding MGP_C57BL6NJ_T0029129.1 MGP_C57BL6NJ_G0018585.1 mouse_genomes_project 11 46543019 46567984 - MGP_C57BL6NJ_P0029129 Cyfip2 protein_coding protein_coding MGP_C57BL6NJ_T0006510.1 MGP_C57BL6NJ_G0005423.1 mouse_genomes_project 11 116856251 116858848 + 1700023C21Rik lincRNA lincRNA MGP_C57BL6NJ_T0029027.1 MGP_C57BL6NJ_G0018559.1 mouse_genomes_project 11 40599833 40606593 - MGP_C57BL6NJ_P0029027 Ccng1 protein_coding protein_coding MGP_C57BL6NJ_T0029028.1 MGP_C57BL6NJ_G0018559.1 mouse_genomes_project 11 40600371 40605220 - Ccng1 protein_coding processed_transcript MGP_C57BL6NJ_T0030199.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69346907 69362859 - MGP_C57BL6NJ_P0030199 Adprm protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030200.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69347043 69362835 - MGP_C57BL6NJ_P0030200 Adprm protein_coding protein_coding MGP_C57BL6NJ_T0030201.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69347271 69349530 - Adprm protein_coding processed_transcript MGP_C57BL6NJ_T0030202.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69350698 69362850 - Adprm protein_coding processed_transcript MGP_C57BL6NJ_T0030203.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69350739 69362856 - Adprm protein_coding processed_transcript MGP_C57BL6NJ_T0030204.1 MGP_C57BL6NJ_G0018875.1 mouse_genomes_project 11 69350884 69362854 - Adprm protein_coding processed_transcript MGP_C57BL6NJ_T0012768.1 MGP_C57BL6NJ_G0010813.1 mouse_genomes_project 11 3960209 3960787 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029341.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51565489 51577588 - MGP_C57BL6NJ_P0029341 Zfp2 protein_coding protein_coding MGP_C57BL6NJ_T0029342.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51565489 51582920 - MGP_C57BL6NJ_P0029342 Zfp2 protein_coding protein_coding MGP_C57BL6NJ_T0029343.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51565836 51582943 - MGP_C57BL6NJ_P0029343 Zfp2 protein_coding protein_coding MGP_C57BL6NJ_T0029344.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51568024 51582909 - Zfp2 protein_coding processed_transcript MGP_C57BL6NJ_T0029345.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51571961 51582930 - Zfp2 protein_coding processed_transcript MGP_C57BL6NJ_T0029346.1 MGP_C57BL6NJ_G0018645.1 mouse_genomes_project 11 51572767 51582912 - Zfp2 protein_coding processed_transcript MGP_C57BL6NJ_T0013049.1 MGP_C57BL6NJ_G0011094.1 mouse_genomes_project 11 108950120 108950918 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102590.1 MGP_C57BL6NJ_G0040410.1 mouse_genomes_project 11 109032972 109058277 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0009880.1 MGP_C57BL6NJ_G0007965.1 mouse_genomes_project 11 61967879 61967945 - Mir6922 miRNA miRNA MGP_C57BL6NJ_T0028519.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9275691 9352490 + MGP_C57BL6NJ_P0028519 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0028520.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9275691 9304701 + MGP_C57BL6NJ_P0028520 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0028521.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9276613 9372616 + MGP_C57BL6NJ_P0028521 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0028522.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9276901 9373430 + MGP_C57BL6NJ_P0028522 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0028523.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9276917 9359831 + MGP_C57BL6NJ_P0028523 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0028524.1 MGP_C57BL6NJ_G0018438.1 mouse_genomes_project 11 9277133 9370302 + MGP_C57BL6NJ_P0028524 Ikzf1 protein_coding protein_coding MGP_C57BL6NJ_T0033965.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123545115 123555980 + MGP_C57BL6NJ_P0033965 Tsen54 protein_coding protein_coding MGP_C57BL6NJ_T0033966.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123545115 123555980 + MGP_C57BL6NJ_P0033966 Tsen54 protein_coding protein_coding MGP_C57BL6NJ_T0033967.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123545137 123545937 + Tsen54 protein_coding retained_intron MGP_C57BL6NJ_T0033968.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123545162 123551518 + Tsen54 protein_coding retained_intron MGP_C57BL6NJ_T0033969.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123545196 123551497 + Tsen54 protein_coding retained_intron MGP_C57BL6NJ_T0033970.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123546089 123552689 + MGP_C57BL6NJ_P0033970 Tsen54 protein_coding protein_coding MGP_C57BL6NJ_T0033971.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123551699 123555975 + MGP_C57BL6NJ_P0033971 Tsen54 protein_coding protein_coding MGP_C57BL6NJ_T0033972.1 MGP_C57BL6NJ_G0019794.1 mouse_genomes_project 11 123551835 123555155 + MGP_C57BL6NJ_P0033972 Tsen54 protein_coding protein_coding MGP_C57BL6NJ_T0031979.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 91995245 92076222 + Rnf43 protein_coding retained_intron MGP_C57BL6NJ_T0031980.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 91995610 92064709 + Rnf43 protein_coding processed_transcript MGP_C57BL6NJ_T0031981.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 91997072 92080828 + MGP_C57BL6NJ_P0031981 Rnf43 protein_coding protein_coding MGP_C57BL6NJ_T0031982.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 91997139 92083072 + MGP_C57BL6NJ_P0031982 Rnf43 protein_coding protein_coding MGP_C57BL6NJ_T0031983.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 92073659 92076814 + Rnf43 protein_coding retained_intron MGP_C57BL6NJ_T0031984.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 92075661 92077401 + Rnf43 protein_coding retained_intron MGP_C57BL6NJ_T0031985.1 MGP_C57BL6NJ_G0019301.1 mouse_genomes_project 11 92080207 92080756 + Rnf43 protein_coding processed_transcript MGP_C57BL6NJ_T0029742.1 MGP_C57BL6NJ_G0018768.1 mouse_genomes_project 11 60466455 60469001 + MGP_C57BL6NJ_P0029742 protein_coding protein_coding MGP_C57BL6NJ_T0006346.1 MGP_C57BL6NJ_G0005296.1 mouse_genomes_project 11 20968751 20969652 - Gm12050 lincRNA lincRNA MGP_C57BL6NJ_T0029633.1 MGP_C57BL6NJ_G0018721.1 mouse_genomes_project 11 56419498 56495104 - MGP_C57BL6NJ_P0029633 Fat2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032440.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102690479 102775669 - MGP_C57BL6NJ_P0032440 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032441.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102690479 102775206 - MGP_C57BL6NJ_P0032441 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032442.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102690481 102775737 - MGP_C57BL6NJ_P0032442 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032443.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102691545 102697133 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032444.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102691570 102727969 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032445.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102691570 102775152 - MGP_C57BL6NJ_P0032445 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032446.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102691795 102697966 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032447.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102698207 102709409 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032448.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102707749 102718361 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032449.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102709038 102711334 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032450.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102714159 102721181 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032451.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102716486 102727981 - Npepps protein_coding processed_transcript MGP_C57BL6NJ_T0032452.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102716491 102728886 - MGP_C57BL6NJ_P0032452 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032453.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102721153 102761343 - MGP_C57BL6NJ_P0032453 Npepps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032454.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102728063 102729249 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032455.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102728736 102775128 - MGP_C57BL6NJ_P0032455 Npepps protein_coding protein_coding MGP_C57BL6NJ_T0032456.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102730530 102775190 - MGP_C57BL6NJ_P0032456 Npepps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032457.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102749284 102775653 - Npepps protein_coding retained_intron MGP_C57BL6NJ_T0032458.1 MGP_C57BL6NJ_G0019420.1 mouse_genomes_project 11 102749955 102761335 - MGP_C57BL6NJ_P0032458 Npepps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017719.1 MGP_C57BL6NJ_G0015600.1 mouse_genomes_project 11 104360619 104361114 - Gm12356 processed_transcript processed_transcript MGP_C57BL6NJ_T0006404.1 MGP_C57BL6NJ_G0005345.1 mouse_genomes_project 11 55291185 55331857 - 4933405E24Rik lincRNA lincRNA MGP_C57BL6NJ_T0003388.1 MGP_C57BL6NJ_G0003125.1 mouse_genomes_project 11 84535558 84543478 - 4930507D10Rik antisense antisense MGP_C57BL6NJ_T0033228.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108742451 108832640 - MGP_C57BL6NJ_P0033228 Gpatch8 protein_coding protein_coding MGP_C57BL6NJ_T0033229.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108743743 108774553 - Gpatch8 protein_coding processed_transcript MGP_C57BL6NJ_T0033230.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108773599 108832640 - Gpatch8 protein_coding processed_transcript MGP_C57BL6NJ_T0033231.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108774278 108832640 - Gpatch8 protein_coding processed_transcript MGP_C57BL6NJ_T0033232.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108809840 108832617 - Gpatch8 protein_coding processed_transcript MGP_C57BL6NJ_T0033233.1 MGP_C57BL6NJ_G0019629.1 mouse_genomes_project 11 108810730 108832833 - Gpatch8 protein_coding processed_transcript MGP_C57BL6NJ_T0003352.1 MGP_C57BL6NJ_G0003096.1 mouse_genomes_project 11 65051934 65065256 - Cdrt4os1 antisense antisense MGP_C57BL6NJ_T0003353.1 MGP_C57BL6NJ_G0003096.1 mouse_genomes_project 11 65060584 65065262 - Cdrt4os1 antisense antisense MGP_C57BL6NJ_T0028975.1 MGP_C57BL6NJ_G0018546.1 mouse_genomes_project 11 33575200 33578952 - MGP_C57BL6NJ_P0028975 Foxi1 protein_coding protein_coding MGP_C57BL6NJ_T0003279.1 MGP_C57BL6NJ_G0003032.1 mouse_genomes_project 11 17186520 17188618 + Gm16140 antisense antisense MGP_C57BL6NJ_T0003280.1 MGP_C57BL6NJ_G0003032.1 mouse_genomes_project 11 17186522 17188226 + Gm16140 antisense antisense MGP_C57BL6NJ_T0012758.1 MGP_C57BL6NJ_G0010803.1 mouse_genomes_project 11 2617694 2617949 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031750.1 MGP_C57BL6NJ_G0019248.1 mouse_genomes_project 11 87598548 87600060 - MGP_C57BL6NJ_P0031750 Ccl3 protein_coding protein_coding MGP_C57BL6NJ_T0033151.1 MGP_C57BL6NJ_G0019619.1 mouse_genomes_project 11 108506575 108519705 + MGP_C57BL6NJ_P0033151 Asb16 protein_coding protein_coding MGP_C57BL6NJ_T0032741.1 MGP_C57BL6NJ_G0019519.1 mouse_genomes_project 11 105797134 105798055 + MGP_C57BL6NJ_P0032741 Gm11565 protein_coding protein_coding MGP_C57BL6NJ_T0032023.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92454822 92461205 + MGP_C57BL6NJ_P0032023 Srsf1 protein_coding protein_coding MGP_C57BL6NJ_T0032024.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92455167 92458940 + MGP_C57BL6NJ_P0032024 Srsf1 protein_coding protein_coding MGP_C57BL6NJ_T0032025.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92455174 92456276 + Srsf1 protein_coding retained_intron MGP_C57BL6NJ_T0032026.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92455252 92457860 + MGP_C57BL6NJ_P0032026 Srsf1 protein_coding protein_coding MGP_C57BL6NJ_T0032027.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92456016 92458922 + MGP_C57BL6NJ_P0032027 Srsf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032028.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92456038 92458572 + MGP_C57BL6NJ_P0032028 Srsf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032029.1 MGP_C57BL6NJ_G0019312.1 mouse_genomes_project 11 92456861 92458501 + Srsf1 protein_coding retained_intron MGP_C57BL6NJ_T0032997.1 MGP_C57BL6NJ_G0019588.1 mouse_genomes_project 11 107489084 107501555 + MGP_C57BL6NJ_P0032997 G6pc protein_coding protein_coding MGP_C57BL6NJ_T0034037.1 MGP_C57BL6NJ_G0019806.1 mouse_genomes_project 11 123842389 123851190 - MGP_C57BL6NJ_P0034037 Wbp2 protein_coding protein_coding MGP_C57BL6NJ_T0034038.1 MGP_C57BL6NJ_G0019806.1 mouse_genomes_project 11 123843068 123851190 - MGP_C57BL6NJ_P0034038 Wbp2 protein_coding protein_coding MGP_C57BL6NJ_T0034039.1 MGP_C57BL6NJ_G0019806.1 mouse_genomes_project 11 123843213 123845610 - Wbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0034040.1 MGP_C57BL6NJ_G0019806.1 mouse_genomes_project 11 123845953 123851190 - Wbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0034041.1 MGP_C57BL6NJ_G0019806.1 mouse_genomes_project 11 123847232 123851167 - Wbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0028988.1 MGP_C57BL6NJ_G0018550.1 mouse_genomes_project 11 34513586 35150748 + MGP_C57BL6NJ_P0028988 Slit3 protein_coding protein_coding MGP_C57BL6NJ_T0028989.1 MGP_C57BL6NJ_G0018550.1 mouse_genomes_project 11 34564773 34635400 + Slit3 protein_coding processed_transcript MGP_C57BL6NJ_T0028990.1 MGP_C57BL6NJ_G0018550.1 mouse_genomes_project 11 34570927 34921590 + Slit3 protein_coding processed_transcript MGP_C57BL6NJ_T0028991.1 MGP_C57BL6NJ_G0018550.1 mouse_genomes_project 11 34898440 35150383 + MGP_C57BL6NJ_P0028991 Slit3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028992.1 MGP_C57BL6NJ_G0018550.1 mouse_genomes_project 11 34959499 35040526 + Slit3 protein_coding processed_transcript MGP_C57BL6NJ_T0013022.1 MGP_C57BL6NJ_G0011067.1 mouse_genomes_project 11 98666820 98668031 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012965.1 MGP_C57BL6NJ_G0011010.1 mouse_genomes_project 11 73616742 73617343 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009864.1 MGP_C57BL6NJ_G0007949.1 mouse_genomes_project 11 46340411 46340532 + Mir8100 miRNA miRNA MGP_C57BL6NJ_T0099759.1 MGP_C57BL6NJ_G0037805.1 mouse_genomes_project 11 67843216 67843326 + Gm26128 snRNA snRNA MGP_C57BL6NJ_T0012772.1 MGP_C57BL6NJ_G0010817.1 mouse_genomes_project 11 4108951 4109717 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034495.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128711551 128714293 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034496.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712009 128713960 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034497.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712123 128714286 - MGP_C57BL6NJ_P0034497 Arl16 protein_coding protein_coding MGP_C57BL6NJ_T0034498.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712276 128714151 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034499.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712283 128714020 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034500.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712298 128714106 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034501.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712439 128714167 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034502.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712453 128714107 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034503.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712455 128714082 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034504.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128712600 128714119 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034505.1 MGP_C57BL6NJ_G0019894.1 mouse_genomes_project 11 128713590 128714139 - Arl16 protein_coding processed_transcript MGP_C57BL6NJ_T0031695.1 MGP_C57BL6NJ_G0019229.1 mouse_genomes_project 11 86793830 86821206 - MGP_C57BL6NJ_P0031695 Slfn9 protein_coding protein_coding MGP_C57BL6NJ_T0031696.1 MGP_C57BL6NJ_G0019229.1 mouse_genomes_project 11 86794613 86821205 - MGP_C57BL6NJ_P0031696 Slfn9 protein_coding protein_coding MGP_C57BL6NJ_T0031700.1 MGP_C57BL6NJ_G0019229.1 mouse_genomes_project 11 86796186 86820513 - MGP_C57BL6NJ_P0031700 Slfn9 protein_coding protein_coding MGP_C57BL6NJ_T0032077.1 MGP_C57BL6NJ_G0019328.1 mouse_genomes_project 11 94663686 94683951 - MGP_C57BL6NJ_P0032077 Pctp protein_coding protein_coding MGP_C57BL6NJ_T0032694.1 MGP_C57BL6NJ_G0019478.1 mouse_genomes_project 11 105016236 105027542 - MGP_C57BL6NJ_P0032694 Krt222 protein_coding protein_coding MGP_C57BL6NJ_T0032695.1 MGP_C57BL6NJ_G0019478.1 mouse_genomes_project 11 105017365 105027560 - MGP_C57BL6NJ_P0032695 Krt222 protein_coding protein_coding MGP_C57BL6NJ_T0032696.1 MGP_C57BL6NJ_G0019478.1 mouse_genomes_project 11 105018418 105022351 - Krt222 protein_coding processed_transcript MGP_C57BL6NJ_T0028937.1 MGP_C57BL6NJ_G0018533.1 mouse_genomes_project 11 31775282 31872832 + MGP_C57BL6NJ_P0028937 Stk10 protein_coding protein_coding MGP_C57BL6NJ_T0028938.1 MGP_C57BL6NJ_G0018533.1 mouse_genomes_project 11 31830196 31841735 + Stk10 protein_coding retained_intron MGP_C57BL6NJ_T0034566.1 MGP_C57BL6NJ_G0019908.1 mouse_genomes_project 11 128888980 128897422 - MGP_C57BL6NJ_P0034566 Mafg protein_coding protein_coding MGP_C57BL6NJ_T0034567.1 MGP_C57BL6NJ_G0019908.1 mouse_genomes_project 11 128892870 128894661 - MGP_C57BL6NJ_P0034567 Mafg protein_coding protein_coding MGP_C57BL6NJ_T0034568.1 MGP_C57BL6NJ_G0019908.1 mouse_genomes_project 11 128893004 128894500 - MGP_C57BL6NJ_P0034568 Mafg protein_coding protein_coding MGP_C57BL6NJ_T0034569.1 MGP_C57BL6NJ_G0019908.1 mouse_genomes_project 11 128893095 128894012 - MGP_C57BL6NJ_P0034569 Mafg protein_coding protein_coding MGP_C57BL6NJ_T0034570.1 MGP_C57BL6NJ_G0019908.1 mouse_genomes_project 11 128895087 128897378 - Mafg protein_coding processed_transcript MGP_C57BL6NJ_T0034115.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124279657 124300305 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0034116.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124279657 124300339 - MGP_C57BL6NJ_P0034116 Prpsap1 protein_coding protein_coding MGP_C57BL6NJ_T0034117.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124280111 124287151 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0034118.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124280188 124282056 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0034119.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124280212 124286570 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0034120.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124286890 124304133 - MGP_C57BL6NJ_P0034120 Prpsap1 protein_coding protein_coding MGP_C57BL6NJ_T0034121.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124287122 124300280 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0034122.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124287364 124300326 - MGP_C57BL6NJ_P0034122 Prpsap1 protein_coding protein_coding MGP_C57BL6NJ_T0034123.1 MGP_C57BL6NJ_G0019821.1 mouse_genomes_project 11 124295521 124300318 - Prpsap1 protein_coding processed_transcript MGP_C57BL6NJ_T0101069.1 MGP_C57BL6NJ_G0039115.1 mouse_genomes_project 11 91736481 91743296 + snoRNA snoRNA MGP_C57BL6NJ_T0033074.1 MGP_C57BL6NJ_G0019605.1 mouse_genomes_project 11 108173209 108179169 - MGP_C57BL6NJ_P0033074 Sost protein_coding protein_coding MGP_C57BL6NJ_T0034182.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124733728 124740861 + MGP_C57BL6NJ_P0034182 Mettl23 protein_coding protein_coding MGP_C57BL6NJ_T0034183.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734005 124741473 + Mettl23 protein_coding retained_intron MGP_C57BL6NJ_T0034184.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734011 124736584 + Mettl23 protein_coding retained_intron MGP_C57BL6NJ_T0034185.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734035 124736506 + Mettl23 protein_coding retained_intron MGP_C57BL6NJ_T0034186.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734123 124740750 + Mettl23 protein_coding retained_intron MGP_C57BL6NJ_T0034187.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734125 124739504 + MGP_C57BL6NJ_P0034187 Mettl23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034188.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124734125 124738806 + MGP_C57BL6NJ_P0034188 Mettl23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034189.1 MGP_C57BL6NJ_G0019833.1 mouse_genomes_project 11 124739351 124745419 + MGP_C57BL6NJ_P0034189 Mettl23 protein_coding protein_coding MGP_C57BL6NJ_T0003327.1 MGP_C57BL6NJ_G0003075.1 mouse_genomes_project 11 60527463 60529302 + Gm12256 antisense antisense MGP_C57BL6NJ_T0006400.1 MGP_C57BL6NJ_G0005342.1 mouse_genomes_project 11 51949824 51982061 - lincRNA lincRNA MGP_C57BL6NJ_T0006401.1 MGP_C57BL6NJ_G0005342.1 mouse_genomes_project 11 51950242 51981169 - lincRNA lincRNA MGP_C57BL6NJ_T0009919.1 MGP_C57BL6NJ_G0008004.1 mouse_genomes_project 11 86877997 86878060 - Gm27598 miRNA miRNA MGP_C57BL6NJ_T0013086.1 MGP_C57BL6NJ_G0011131.1 mouse_genomes_project 11 124366852 124367085 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028619.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19074021 19122612 - MGP_C57BL6NJ_P0028619 Aftph protein_coding protein_coding MGP_C57BL6NJ_T0028620.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19074028 19138209 - MGP_C57BL6NJ_P0028620 Aftph protein_coding protein_coding MGP_C57BL6NJ_T0028621.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19074660 19122147 - MGP_C57BL6NJ_P0028621 Aftph protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028622.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19074925 19081747 - Aftph protein_coding retained_intron MGP_C57BL6NJ_T0028623.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19075062 19121177 - MGP_C57BL6NJ_P0028623 Aftph protein_coding protein_coding MGP_C57BL6NJ_T0028624.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19084958 19104486 - Aftph protein_coding retained_intron MGP_C57BL6NJ_T0028625.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19093141 19104412 - Aftph protein_coding retained_intron MGP_C57BL6NJ_T0028626.1 MGP_C57BL6NJ_G0018461.1 mouse_genomes_project 11 19100788 19104392 - Aftph protein_coding retained_intron MGP_C57BL6NJ_T0029414.1 MGP_C57BL6NJ_G0018666.1 mouse_genomes_project 11 52569688 52598679 + MGP_C57BL6NJ_P0029414 Sar1b protein_coding protein_coding MGP_C57BL6NJ_T0029415.1 MGP_C57BL6NJ_G0018666.1 mouse_genomes_project 11 52569695 52589626 + Sar1b protein_coding processed_transcript MGP_C57BL6NJ_T0032762.1 MGP_C57BL6NJ_G0019534.1 mouse_genomes_project 11 106056635 106061946 - MGP_C57BL6NJ_P0032762 Krt19 protein_coding protein_coding MGP_C57BL6NJ_T0032763.1 MGP_C57BL6NJ_G0019534.1 mouse_genomes_project 11 106056732 106059525 - Krt19 protein_coding processed_transcript MGP_C57BL6NJ_T0032764.1 MGP_C57BL6NJ_G0019534.1 mouse_genomes_project 11 106057945 106064493 - Krt19 protein_coding processed_transcript MGP_C57BL6NJ_T0003345.1 MGP_C57BL6NJ_G0003090.1 mouse_genomes_project 11 64634312 64636295 + Lrrc75aos2 antisense antisense MGP_C57BL6NJ_T0003346.1 MGP_C57BL6NJ_G0003090.1 mouse_genomes_project 11 64634313 64635570 + Lrrc75aos2 antisense antisense MGP_C57BL6NJ_T0012886.1 MGP_C57BL6NJ_G0010931.1 mouse_genomes_project 11 46262044 46262386 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031645.1 MGP_C57BL6NJ_G0019217.1 mouse_genomes_project 11 85865130 85866745 + MGP_C57BL6NJ_P0031645 Ccl8 protein_coding protein_coding MGP_C57BL6NJ_T0031253.1 MGP_C57BL6NJ_G0019124.1 mouse_genomes_project 11 79486654 79656539 - MGP_C57BL6NJ_P0031253 Nxn protein_coding protein_coding MGP_C57BL6NJ_T0031254.1 MGP_C57BL6NJ_G0019124.1 mouse_genomes_project 11 79486687 79656491 - MGP_C57BL6NJ_P0031254 Nxn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031255.1 MGP_C57BL6NJ_G0019124.1 mouse_genomes_project 11 79616448 79656467 - Nxn protein_coding processed_transcript MGP_C57BL6NJ_T0029198.1 MGP_C57BL6NJ_G0018609.1 mouse_genomes_project 11 49661018 49667296 + MGP_C57BL6NJ_P0029198 Olfr1395 protein_coding protein_coding MGP_C57BL6NJ_T0029199.1 MGP_C57BL6NJ_G0018609.1 mouse_genomes_project 11 49666342 49667296 + MGP_C57BL6NJ_P0029199 Olfr1395 protein_coding protein_coding MGP_C57BL6NJ_T0101063.1 MGP_C57BL6NJ_G0039109.1 mouse_genomes_project 11 87211488 87211585 + Snord7 snoRNA snoRNA MGP_C57BL6NJ_T0031596.1 MGP_C57BL6NJ_G0019202.1 mouse_genomes_project 11 83949605 84005146 + MGP_C57BL6NJ_P0031596 Rhbdl3 protein_coding protein_coding MGP_C57BL6NJ_T0031597.1 MGP_C57BL6NJ_G0019202.1 mouse_genomes_project 11 83968377 83972846 + Rhbdl3 protein_coding retained_intron MGP_C57BL6NJ_T0031598.1 MGP_C57BL6NJ_G0019202.1 mouse_genomes_project 11 83995714 84002873 + Rhbdl3 protein_coding retained_intron MGP_C57BL6NJ_T0017702.1 MGP_C57BL6NJ_G0015589.1 mouse_genomes_project 11 101167824 101170292 + 4833417C18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029392.1 MGP_C57BL6NJ_G0018659.1 mouse_genomes_project 11 52386849 52393595 - MGP_C57BL6NJ_P0029392 Hnrnpab protein_coding protein_coding MGP_C57BL6NJ_T0029393.1 MGP_C57BL6NJ_G0018659.1 mouse_genomes_project 11 52387618 52393595 - MGP_C57BL6NJ_P0029393 Hnrnpab protein_coding protein_coding MGP_C57BL6NJ_T0029394.1 MGP_C57BL6NJ_G0018659.1 mouse_genomes_project 11 52387923 52393595 - MGP_C57BL6NJ_P0029394 Hnrnpab protein_coding protein_coding MGP_C57BL6NJ_T0012803.1 MGP_C57BL6NJ_G0010848.1 mouse_genomes_project 11 17583410 17585758 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101070.1 MGP_C57BL6NJ_G0039116.1 mouse_genomes_project 11 91736481 91736697 + Rnu3b4 snoRNA snoRNA MGP_C57BL6NJ_T0033293.1 MGP_C57BL6NJ_G0019645.1 mouse_genomes_project 11 109418004 109448304 - MGP_C57BL6NJ_P0033293 Plcd3 protein_coding protein_coding MGP_C57BL6NJ_T0033294.1 MGP_C57BL6NJ_G0019645.1 mouse_genomes_project 11 109418004 109425995 - MGP_C57BL6NJ_P0033294 Plcd3 protein_coding protein_coding MGP_C57BL6NJ_T0033295.1 MGP_C57BL6NJ_G0019645.1 mouse_genomes_project 11 109418285 109419451 - Plcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0033296.1 MGP_C57BL6NJ_G0019645.1 mouse_genomes_project 11 109428253 109448264 - Plcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0033297.1 MGP_C57BL6NJ_G0019645.1 mouse_genomes_project 11 109429430 109448237 - Plcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0032484.1 MGP_C57BL6NJ_G0019429.1 mouse_genomes_project 11 103231879 103235247 + MGP_C57BL6NJ_P0032484 Cisd3 protein_coding protein_coding MGP_C57BL6NJ_T0032485.1 MGP_C57BL6NJ_G0019429.1 mouse_genomes_project 11 103231896 103235247 + MGP_C57BL6NJ_P0032485 Cisd3 protein_coding protein_coding MGP_C57BL6NJ_T0032486.1 MGP_C57BL6NJ_G0019429.1 mouse_genomes_project 11 103232006 103235249 + MGP_C57BL6NJ_P0032486 Cisd3 protein_coding protein_coding MGP_C57BL6NJ_T0028262.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1516240 1634205 - MGP_C57BL6NJ_P0028262 Mtmr3 protein_coding protein_coding MGP_C57BL6NJ_T0028263.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1516247 1523739 - Mtmr3 protein_coding processed_transcript MGP_C57BL6NJ_T0028264.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1516247 1585205 - MGP_C57BL6NJ_P0028264 Mtmr3 protein_coding protein_coding MGP_C57BL6NJ_T0028265.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1516262 1567355 - MGP_C57BL6NJ_P0028265 Mtmr3 protein_coding protein_coding MGP_C57BL6NJ_T0028266.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1517931 1634253 - MGP_C57BL6NJ_P0028266 Mtmr3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028267.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1518124 1567355 - MGP_C57BL6NJ_P0028267 Mtmr3 protein_coding protein_coding MGP_C57BL6NJ_T0028268.1 MGP_C57BL6NJ_G0018377.1 mouse_genomes_project 11 1527179 1528691 - Mtmr3 protein_coding processed_transcript MGP_C57BL6NJ_T0006398.1 MGP_C57BL6NJ_G0005340.1 mouse_genomes_project 11 50868430 50922793 + Gm26542 lincRNA lincRNA MGP_C57BL6NJ_T0101052.1 MGP_C57BL6NJ_G0039098.1 mouse_genomes_project 11 75468236 75468385 - Gm24143 snoRNA snoRNA MGP_C57BL6NJ_T0013032.1 MGP_C57BL6NJ_G0011077.1 mouse_genomes_project 11 102588287 102588407 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009905.1 MGP_C57BL6NJ_G0007990.1 mouse_genomes_project 11 78279842 78279933 + Mir212 miRNA miRNA MGP_C57BL6NJ_T0029181.1 MGP_C57BL6NJ_G0018601.1 mouse_genomes_project 11 49334615 49344765 - Irgm1 protein_coding processed_transcript MGP_C57BL6NJ_T0029182.1 MGP_C57BL6NJ_G0018601.1 mouse_genomes_project 11 49337892 49344456 - MGP_C57BL6NJ_P0029182 Irgm1 protein_coding protein_coding MGP_C57BL6NJ_T0029183.1 MGP_C57BL6NJ_G0018601.1 mouse_genomes_project 11 49338765 49344502 - MGP_C57BL6NJ_P0029183 Irgm1 protein_coding protein_coding MGP_C57BL6NJ_T0013008.1 MGP_C57BL6NJ_G0011053.1 mouse_genomes_project 11 90863447 90864046 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028417.1 MGP_C57BL6NJ_G0018411.1 mouse_genomes_project 11 3461026 3469880 - MGP_C57BL6NJ_P0028417 Ddx56 protein_coding protein_coding MGP_C57BL6NJ_T0028418.1 MGP_C57BL6NJ_G0018411.1 mouse_genomes_project 11 3467414 3468500 - Ddx56 protein_coding retained_intron MGP_C57BL6NJ_T0028419.1 MGP_C57BL6NJ_G0018411.1 mouse_genomes_project 11 3467744 3469880 - MGP_C57BL6NJ_P0028419 Ddx56 protein_coding protein_coding MGP_C57BL6NJ_T0028420.1 MGP_C57BL6NJ_G0018411.1 mouse_genomes_project 11 3469153 3469854 - Ddx56 protein_coding retained_intron MGP_C57BL6NJ_T0006395.1 MGP_C57BL6NJ_G0005338.1 mouse_genomes_project 11 46805450 46826280 + Gm12171 lincRNA lincRNA MGP_C57BL6NJ_T0006396.1 MGP_C57BL6NJ_G0005338.1 mouse_genomes_project 11 46811301 46825281 + Gm12171 lincRNA lincRNA MGP_C57BL6NJ_T0029068.1 MGP_C57BL6NJ_G0018568.1 mouse_genomes_project 11 43531013 43554096 + MGP_C57BL6NJ_P0029068 C1qtnf2 protein_coding protein_coding MGP_C57BL6NJ_T0029069.1 MGP_C57BL6NJ_G0018568.1 mouse_genomes_project 11 43531043 43554116 + MGP_C57BL6NJ_P0029069 C1qtnf2 protein_coding protein_coding MGP_C57BL6NJ_T0029070.1 MGP_C57BL6NJ_G0018568.1 mouse_genomes_project 11 43537566 43553455 + MGP_C57BL6NJ_P0029070 C1qtnf2 protein_coding protein_coding MGP_C57BL6NJ_T0006427.1 MGP_C57BL6NJ_G0005364.1 mouse_genomes_project 11 73323992 73326527 - Gm12315 lincRNA lincRNA MGP_C57BL6NJ_T0033356.1 MGP_C57BL6NJ_G0019659.1 mouse_genomes_project 11 110086309 110109960 - MGP_C57BL6NJ_P0033356 Gosr2 protein_coding protein_coding MGP_C57BL6NJ_T0033357.1 MGP_C57BL6NJ_G0019659.1 mouse_genomes_project 11 110088178 110109756 - MGP_C57BL6NJ_P0033357 Gosr2 protein_coding protein_coding MGP_C57BL6NJ_T0033358.1 MGP_C57BL6NJ_G0019659.1 mouse_genomes_project 11 110088385 110109760 - Gosr2 protein_coding processed_transcript MGP_C57BL6NJ_T0033790.1 MGP_C57BL6NJ_G0019756.1 mouse_genomes_project 11 122413356 122429336 + MGP_C57BL6NJ_P0033790 Cd300a protein_coding protein_coding MGP_C57BL6NJ_T0033791.1 MGP_C57BL6NJ_G0019756.1 mouse_genomes_project 11 122413356 122429336 + MGP_C57BL6NJ_P0033791 Cd300a protein_coding protein_coding MGP_C57BL6NJ_T0033792.1 MGP_C57BL6NJ_G0019756.1 mouse_genomes_project 11 122413609 122418152 + Cd300a protein_coding processed_transcript MGP_C57BL6NJ_T0017685.1 MGP_C57BL6NJ_G0015582.1 mouse_genomes_project 11 86734783 86741606 - Unc45bos processed_transcript processed_transcript MGP_C57BL6NJ_T0032131.1 MGP_C57BL6NJ_G0019340.1 mouse_genomes_project 11 98975493 98995666 - MGP_C57BL6NJ_P0032131 Gm20390 protein_coding protein_coding MGP_C57BL6NJ_T0013070.1 MGP_C57BL6NJ_G0011115.1 mouse_genomes_project 11 118415018 118415850 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006348.1 MGP_C57BL6NJ_G0005298.1 mouse_genomes_project 11 21140386 21150955 - Gm26829 lincRNA lincRNA MGP_C57BL6NJ_T0006339.1 MGP_C57BL6NJ_G0005290.1 mouse_genomes_project 11 16907010 16911183 - Gm28401 lincRNA lincRNA MGP_C57BL6NJ_T0006340.1 MGP_C57BL6NJ_G0005290.1 mouse_genomes_project 11 16907105 16911202 - Gm28401 lincRNA lincRNA MGP_C57BL6NJ_T0032550.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103752739 103798441 - MGP_C57BL6NJ_P0032550 Med1 protein_coding protein_coding MGP_C57BL6NJ_T0032551.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103753596 103764564 - Med1 protein_coding processed_transcript MGP_C57BL6NJ_T0032552.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103755847 103798264 - MGP_C57BL6NJ_P0032552 Med1 protein_coding protein_coding MGP_C57BL6NJ_T0032553.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103758359 103761629 - Med1 protein_coding processed_transcript MGP_C57BL6NJ_T0032554.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103769969 103782789 - Med1 protein_coding processed_transcript MGP_C57BL6NJ_T0032555.1 MGP_C57BL6NJ_G0019445.1 mouse_genomes_project 11 103770517 103798457 - Med1 protein_coding processed_transcript MGP_C57BL6NJ_T0031036.1 MGP_C57BL6NJ_G0019065.1 mouse_genomes_project 11 76799742 76804063 - MGP_C57BL6NJ_P0031036 Olfr391-ps protein_coding protein_coding MGP_C57BL6NJ_T0031042.1 MGP_C57BL6NJ_G0019070.1 mouse_genomes_project 11 76940957 76942007 + MGP_C57BL6NJ_P0031042 Olfr23 protein_coding protein_coding MGP_C57BL6NJ_T0006354.1 MGP_C57BL6NJ_G0005304.1 mouse_genomes_project 11 22888518 22892367 - Gm12065 lincRNA lincRNA MGP_C57BL6NJ_T0012797.1 MGP_C57BL6NJ_G0010842.1 mouse_genomes_project 11 15692024 15692705 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032891.1 MGP_C57BL6NJ_G0019565.1 mouse_genomes_project 11 106959549 106974646 - MGP_C57BL6NJ_P0032891 Ptrf protein_coding protein_coding MGP_C57BL6NJ_T0032892.1 MGP_C57BL6NJ_G0019565.1 mouse_genomes_project 11 106968165 106974310 - Ptrf protein_coding processed_transcript MGP_C57BL6NJ_T0006527.1 MGP_C57BL6NJ_G0005435.1 mouse_genomes_project 11 123308923 123320146 + Gm26613 lincRNA lincRNA MGP_C57BL6NJ_T0033612.1 MGP_C57BL6NJ_G0019718.1 mouse_genomes_project 11 115216086 115272425 + MGP_C57BL6NJ_P0033612 Apoh protein_coding protein_coding MGP_C57BL6NJ_T0033613.1 MGP_C57BL6NJ_G0019718.1 mouse_genomes_project 11 115256895 115272370 + MGP_C57BL6NJ_P0033613 Apoh protein_coding protein_coding MGP_C57BL6NJ_T0033614.1 MGP_C57BL6NJ_G0019718.1 mouse_genomes_project 11 115256900 115283788 + MGP_C57BL6NJ_P0033614 Apoh protein_coding protein_coding MGP_C57BL6NJ_T0033615.1 MGP_C57BL6NJ_G0019718.1 mouse_genomes_project 11 115271812 115290345 + MGP_C57BL6NJ_P0033615 Apoh protein_coding protein_coding MGP_C57BL6NJ_T0031801.1 MGP_C57BL6NJ_G0019262.1 mouse_genomes_project 11 88557715 88564967 - MGP_C57BL6NJ_P0031801 Lhx1 protein_coding protein_coding MGP_C57BL6NJ_T0031802.1 MGP_C57BL6NJ_G0019262.1 mouse_genomes_project 11 88558873 88561763 - MGP_C57BL6NJ_P0031802 Lhx1 protein_coding protein_coding MGP_C57BL6NJ_T0031803.1 MGP_C57BL6NJ_G0019262.1 mouse_genomes_project 11 88559137 88561499 - Lhx1 protein_coding retained_intron MGP_C57BL6NJ_T0031804.1 MGP_C57BL6NJ_G0019262.1 mouse_genomes_project 11 88561327 88562143 - MGP_C57BL6NJ_P0031804 Lhx1 protein_coding protein_coding MGP_C57BL6NJ_T0031028.1 MGP_C57BL6NJ_G0019062.1 mouse_genomes_project 11 76673029 76718055 + MGP_C57BL6NJ_P0031028 Zfp735 protein_coding protein_coding MGP_C57BL6NJ_T0031029.1 MGP_C57BL6NJ_G0019062.1 mouse_genomes_project 11 76673050 76715088 + Zfp735 protein_coding processed_transcript MGP_C57BL6NJ_T0031030.1 MGP_C57BL6NJ_G0019062.1 mouse_genomes_project 11 76677955 76715020 + Zfp735 protein_coding processed_transcript MGP_C57BL6NJ_T0028478.1 MGP_C57BL6NJ_G0018424.1 mouse_genomes_project 11 4083740 4085769 - Gm11983 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0028479.1 MGP_C57BL6NJ_G0018424.1 mouse_genomes_project 11 4084922 4085240 - MGP_C57BL6NJ_P0028479 Gm11983 protein_coding protein_coding MGP_C57BL6NJ_T0101045.1 MGP_C57BL6NJ_G0039091.1 mouse_genomes_project 11 71589000 71589135 + Snord118 snoRNA snoRNA MGP_C57BL6NJ_T0033796.1 MGP_C57BL6NJ_G0019758.1 mouse_genomes_project 11 122488677 122505482 - Cd300c protein_coding processed_transcript MGP_C57BL6NJ_T0033797.1 MGP_C57BL6NJ_G0019758.1 mouse_genomes_project 11 122488829 122494477 - MGP_C57BL6NJ_P0033797 Cd300c protein_coding protein_coding MGP_C57BL6NJ_T0033798.1 MGP_C57BL6NJ_G0019758.1 mouse_genomes_project 11 122488839 122494477 - MGP_C57BL6NJ_P0033798 Cd300c protein_coding protein_coding MGP_C57BL6NJ_T0030494.1 MGP_C57BL6NJ_G0018940.1 mouse_genomes_project 11 72262911 72265620 - MGP_C57BL6NJ_P0030494 Tnfsf13 protein_coding protein_coding MGP_C57BL6NJ_T0030495.1 MGP_C57BL6NJ_G0018940.1 mouse_genomes_project 11 72262997 72265850 - MGP_C57BL6NJ_P0030495 Tnfsf13 protein_coding protein_coding MGP_C57BL6NJ_T0099739.1 MGP_C57BL6NJ_G0037785.1 mouse_genomes_project 11 18501181 18501284 - Gm26253 snRNA snRNA MGP_C57BL6NJ_T0028224.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1107776 1130781 - MGP_C57BL6NJ_P0028224 Sec14l2 protein_coding protein_coding MGP_C57BL6NJ_T0028225.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1108512 1130646 - Sec14l2 protein_coding processed_transcript MGP_C57BL6NJ_T0028226.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1108512 1121208 - Sec14l2 protein_coding processed_transcript MGP_C57BL6NJ_T0028227.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1115393 1120958 - Sec14l2 protein_coding processed_transcript MGP_C57BL6NJ_T0028228.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1123103 1135365 - Sec14l2 protein_coding processed_transcript MGP_C57BL6NJ_T0028229.1 MGP_C57BL6NJ_G0018368.1 mouse_genomes_project 11 1128406 1130703 - Sec14l2 protein_coding processed_transcript MGP_C57BL6NJ_T0033837.1 MGP_C57BL6NJ_G0019771.1 mouse_genomes_project 11 122928858 122950867 - MGP_C57BL6NJ_P0033837 Fads6 protein_coding protein_coding MGP_C57BL6NJ_T0033838.1 MGP_C57BL6NJ_G0019771.1 mouse_genomes_project 11 122948317 122951016 - Fads6 protein_coding processed_transcript MGP_C57BL6NJ_T0030403.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71884048 71889386 - Chd3 protein_coding retained_intron MGP_C57BL6NJ_T0030404.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71884048 71886795 - Chd3 protein_coding retained_intron MGP_C57BL6NJ_T0030405.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71884048 71910455 - MGP_C57BL6NJ_P0030405 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0030406.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71885126 71910455 - MGP_C57BL6NJ_P0030406 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0030407.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71885911 71905858 - MGP_C57BL6NJ_P0030407 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0030408.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71886911 71887910 - Chd3 protein_coding retained_intron MGP_C57BL6NJ_T0030409.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71894645 71895243 - Chd3 protein_coding retained_intron MGP_C57BL6NJ_T0030410.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71895238 71897689 - MGP_C57BL6NJ_P0030410 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0030411.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71901785 71902800 - MGP_C57BL6NJ_P0030411 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0030412.1 MGP_C57BL6NJ_G0018920.1 mouse_genomes_project 11 71901802 71902800 - MGP_C57BL6NJ_P0030412 Chd3 protein_coding protein_coding MGP_C57BL6NJ_T0012997.1 MGP_C57BL6NJ_G0011042.1 mouse_genomes_project 11 86513064 86513358 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030357.1 MGP_C57BL6NJ_G0018909.1 mouse_genomes_project 11 71604742 71608637 + MGP_C57BL6NJ_P0030357 Vamp2 protein_coding protein_coding MGP_C57BL6NJ_T0030358.1 MGP_C57BL6NJ_G0018909.1 mouse_genomes_project 11 71604762 71606943 + MGP_C57BL6NJ_P0030358 Vamp2 protein_coding protein_coding MGP_C57BL6NJ_T0030359.1 MGP_C57BL6NJ_G0018909.1 mouse_genomes_project 11 71604774 71605928 + Vamp2 protein_coding retained_intron MGP_C57BL6NJ_T0030360.1 MGP_C57BL6NJ_G0018909.1 mouse_genomes_project 11 71604795 71606303 + Vamp2 protein_coding processed_transcript MGP_C57BL6NJ_T0030361.1 MGP_C57BL6NJ_G0018909.1 mouse_genomes_project 11 71605858 71606429 + Vamp2 protein_coding retained_intron MGP_C57BL6NJ_T0031299.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80417500 80561905 - MGP_C57BL6NJ_P0031299 Efcab5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031300.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80418013 80531916 - MGP_C57BL6NJ_P0031300 Efcab5 protein_coding protein_coding MGP_C57BL6NJ_T0031301.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80418042 80432090 - Efcab5 protein_coding retained_intron MGP_C57BL6NJ_T0031302.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80418283 80488278 - MGP_C57BL6NJ_P0031302 Efcab5 protein_coding protein_coding MGP_C57BL6NJ_T0031303.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80431747 80470405 - Efcab5 protein_coding retained_intron MGP_C57BL6NJ_T0031304.1 MGP_C57BL6NJ_G0019135.1 mouse_genomes_project 11 80488054 80509802 - Efcab5 protein_coding processed_transcript MGP_C57BL6NJ_T0006383.1 MGP_C57BL6NJ_G0005327.1 mouse_genomes_project 11 39829992 40178097 + lincRNA lincRNA MGP_C57BL6NJ_T0003299.1 MGP_C57BL6NJ_G0003050.1 mouse_genomes_project 11 46386640 46389960 - Gm16033 antisense antisense MGP_C57BL6NJ_T0031017.1 MGP_C57BL6NJ_G0019054.1 mouse_genomes_project 11 76298158 76302349 + MGP_C57BL6NJ_P0031017 Olfr376 protein_coding protein_coding MGP_C57BL6NJ_T0032500.1 MGP_C57BL6NJ_G0019435.1 mouse_genomes_project 11 103337576 103343228 - MGP_C57BL6NJ_P0032500 Rpl23 protein_coding protein_coding MGP_C57BL6NJ_T0032501.1 MGP_C57BL6NJ_G0019435.1 mouse_genomes_project 11 103338087 103343067 - Rpl23 protein_coding processed_transcript MGP_C57BL6NJ_T0032502.1 MGP_C57BL6NJ_G0019435.1 mouse_genomes_project 11 103338105 103338685 - Rpl23 protein_coding processed_transcript MGP_C57BL6NJ_T0032503.1 MGP_C57BL6NJ_G0019435.1 mouse_genomes_project 11 103342152 103343153 - Rpl23 protein_coding processed_transcript MGP_C57BL6NJ_T0032504.1 MGP_C57BL6NJ_G0019435.1 mouse_genomes_project 11 103342194 103343173 - MGP_C57BL6NJ_P0032504 Rpl23 protein_coding protein_coding MGP_C57BL6NJ_T0000973.1 MGP_C57BL6NJ_G0000883.1 mouse_genomes_project 11 17056904 17059868 - TEC TEC MGP_C57BL6NJ_T0028332.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2192597 2199886 + MGP_C57BL6NJ_P0028332 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028333.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2192748 2194259 + Rhbdd3 protein_coding processed_transcript MGP_C57BL6NJ_T0028334.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2192944 2194179 + Rhbdd3 protein_coding processed_transcript MGP_C57BL6NJ_T0028335.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193104 2197144 + MGP_C57BL6NJ_P0028335 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028336.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193110 2199886 + MGP_C57BL6NJ_P0028336 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028337.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193147 2197049 + MGP_C57BL6NJ_P0028337 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028338.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193279 2197055 + MGP_C57BL6NJ_P0028338 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028339.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193828 2199886 + MGP_C57BL6NJ_P0028339 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028340.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193841 2199023 + MGP_C57BL6NJ_P0028340 Rhbdd3 protein_coding protein_coding MGP_C57BL6NJ_T0028341.1 MGP_C57BL6NJ_G0018390.1 mouse_genomes_project 11 2193908 2199888 + Rhbdd3 protein_coding processed_transcript MGP_C57BL6NJ_T0101009.1 MGP_C57BL6NJ_G0039055.1 mouse_genomes_project 11 2691055 2691185 - Gm22471 snoRNA snoRNA MGP_C57BL6NJ_T0028458.1 MGP_C57BL6NJ_G0018420.1 mouse_genomes_project 11 3839884 3848117 - MGP_C57BL6NJ_P0028458 protein_coding protein_coding MGP_C57BL6NJ_T0028459.1 MGP_C57BL6NJ_G0018420.1 mouse_genomes_project 11 3839953 3841454 - MGP_C57BL6NJ_P0028459 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028460.1 MGP_C57BL6NJ_G0018420.1 mouse_genomes_project 11 3839964 3842000 - MGP_C57BL6NJ_P0028460 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031054.1 MGP_C57BL6NJ_G0019076.1 mouse_genomes_project 11 77128498 77129446 + MGP_C57BL6NJ_P0031054 Olfr401 protein_coding protein_coding MGP_C57BL6NJ_T0031217.1 MGP_C57BL6NJ_G0019117.1 mouse_genomes_project 11 79230155 79238744 - MGP_C57BL6NJ_P0031217 Fam101b protein_coding protein_coding MGP_C57BL6NJ_T0031639.1 MGP_C57BL6NJ_G0019213.1 mouse_genomes_project 11 85777796 85779669 + MGP_C57BL6NJ_P0031639 Ccl2 protein_coding protein_coding MGP_C57BL6NJ_T0031640.1 MGP_C57BL6NJ_G0019213.1 mouse_genomes_project 11 85777835 85779666 + Ccl2 protein_coding retained_intron MGP_C57BL6NJ_T0012910.1 MGP_C57BL6NJ_G0010955.1 mouse_genomes_project 11 54964986 54965385 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032262.1 MGP_C57BL6NJ_G0019370.1 mouse_genomes_project 11 100370526 100375702 + MGP_C57BL6NJ_P0032262 Dlx3 protein_coding protein_coding MGP_C57BL6NJ_T0003406.1 MGP_C57BL6NJ_G0003138.1 mouse_genomes_project 11 92816280 92823936 + Gm15893 antisense antisense MGP_C57BL6NJ_T0003449.1 MGP_C57BL6NJ_G0003170.1 mouse_genomes_project 11 107751653 107760557 - antisense antisense MGP_C57BL6NJ_T0032734.1 MGP_C57BL6NJ_G0019512.1 mouse_genomes_project 11 105653181 105653650 - MGP_C57BL6NJ_P0032734 protein_coding protein_coding MGP_C57BL6NJ_T0006439.1 MGP_C57BL6NJ_G0005374.1 mouse_genomes_project 11 75903392 75906327 - 4732414G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006440.1 MGP_C57BL6NJ_G0005374.1 mouse_genomes_project 11 75903392 75906364 - 4732414G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0029752.1 MGP_C57BL6NJ_G0018774.1 mouse_genomes_project 11 60590656 60596985 - MGP_C57BL6NJ_P0029752 protein_coding protein_coding MGP_C57BL6NJ_T0017611.1 MGP_C57BL6NJ_G0015543.1 mouse_genomes_project 11 601338 610987 - Tug1 processed_transcript antisense MGP_C57BL6NJ_T0017612.1 MGP_C57BL6NJ_G0015543.1 mouse_genomes_project 11 601347 612273 - Tug1 processed_transcript antisense MGP_C57BL6NJ_T0017613.1 MGP_C57BL6NJ_G0015543.1 mouse_genomes_project 11 601347 610991 - Tug1 processed_transcript antisense MGP_C57BL6NJ_T0017614.1 MGP_C57BL6NJ_G0015543.1 mouse_genomes_project 11 610301 612503 - Tug1 processed_transcript antisense MGP_C57BL6NJ_T0017615.1 MGP_C57BL6NJ_G0015543.1 mouse_genomes_project 11 611522 613134 - Tug1 processed_transcript TEC MGP_C57BL6NJ_T0028635.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19670614 19760569 + MGP_C57BL6NJ_P0028635 Vps54 protein_coding protein_coding MGP_C57BL6NJ_T0028636.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19670614 19760583 + MGP_C57BL6NJ_P0028636 Vps54 protein_coding protein_coding MGP_C57BL6NJ_T0028637.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19702720 19759771 + MGP_C57BL6NJ_P0028637 Vps54 protein_coding protein_coding MGP_C57BL6NJ_T0028638.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19713228 19727873 + Vps54 protein_coding processed_transcript MGP_C57BL6NJ_T0028639.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19737183 19744091 + Vps54 protein_coding processed_transcript MGP_C57BL6NJ_T0028640.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19751557 19754046 + Vps54 protein_coding processed_transcript MGP_C57BL6NJ_T0028641.1 MGP_C57BL6NJ_G0018464.1 mouse_genomes_project 11 19753133 19759984 + Vps54 protein_coding processed_transcript MGP_C57BL6NJ_T0003521.1 MGP_C57BL6NJ_G0003228.1 mouse_genomes_project 11 129138094 129141310 + Gm11773 antisense antisense MGP_C57BL6NJ_T0101049.1 MGP_C57BL6NJ_G0039095.1 mouse_genomes_project 11 73985200 73985334 - Gm23266 snoRNA snoRNA MGP_C57BL6NJ_T0031375.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81359268 81407262 + MGP_C57BL6NJ_P0031375 Sez6 protein_coding protein_coding MGP_C57BL6NJ_T0031376.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81359307 81407262 + Sez6 protein_coding retained_intron MGP_C57BL6NJ_T0031377.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81359385 81392305 + Sez6 protein_coding retained_intron MGP_C57BL6NJ_T0031378.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81359480 81407254 + MGP_C57BL6NJ_P0031378 Sez6 protein_coding protein_coding MGP_C57BL6NJ_T0031379.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81359507 81406275 + Sez6 protein_coding retained_intron MGP_C57BL6NJ_T0031380.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81379631 81383089 + Sez6 protein_coding processed_transcript MGP_C57BL6NJ_T0031381.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81382179 81407262 + MGP_C57BL6NJ_P0031381 Sez6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031382.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81397213 81402704 + MGP_C57BL6NJ_P0031382 Sez6 protein_coding protein_coding MGP_C57BL6NJ_T0031383.1 MGP_C57BL6NJ_G0019149.1 mouse_genomes_project 11 81401388 81402590 + Sez6 protein_coding retained_intron MGP_C57BL6NJ_T0030898.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 74964020 74965395 - 4933427D14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0030899.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 74964020 75023419 - MGP_C57BL6NJ_P0030899 4933427D14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030900.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 74964021 75023227 - MGP_C57BL6NJ_P0030900 4933427D14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030901.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 74964188 75019731 - MGP_C57BL6NJ_P0030901 4933427D14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030902.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 74965484 74988075 - 4933427D14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0030903.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 75008187 75023391 - MGP_C57BL6NJ_P0030903 4933427D14Rik protein_coding protein_coding MGP_C57BL6NJ_T0030904.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 75011175 75023180 - 4933427D14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0030905.1 MGP_C57BL6NJ_G0019021.1 mouse_genomes_project 11 75011422 75018572 - 4933427D14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0009878.1 MGP_C57BL6NJ_G0007963.1 mouse_genomes_project 11 61037891 61037987 - Gm24756 miRNA miRNA MGP_C57BL6NJ_T0028461.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3857643 3868182 - MGP_C57BL6NJ_P0028461 Tbrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028462.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3857644 3868206 - MGP_C57BL6NJ_P0028462 Tbrg4 protein_coding protein_coding MGP_C57BL6NJ_T0028463.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3858587 3868182 - MGP_C57BL6NJ_P0028463 Tbrg4 protein_coding protein_coding MGP_C57BL6NJ_T0028464.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3858589 3868182 - MGP_C57BL6NJ_P0028464 Tbrg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028465.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3859418 3860195 - Tbrg4 protein_coding retained_intron MGP_C57BL6NJ_T0028466.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3861720 3863080 - Tbrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0028467.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3861750 3862610 - Tbrg4 protein_coding retained_intron MGP_C57BL6NJ_T0028468.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3862166 3863416 - Tbrg4 protein_coding retained_intron MGP_C57BL6NJ_T0028469.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3862344 3863230 - Tbrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0028470.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3863161 3868206 - MGP_C57BL6NJ_P0028470 Tbrg4 protein_coding protein_coding MGP_C57BL6NJ_T0028471.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3865364 3868161 - Tbrg4 protein_coding processed_transcript MGP_C57BL6NJ_T0028472.1 MGP_C57BL6NJ_G0018421.1 mouse_genomes_project 11 3866048 3867623 - MGP_C57BL6NJ_P0028472 Tbrg4 protein_coding protein_coding MGP_C57BL6NJ_T0030034.1 MGP_C57BL6NJ_G0018837.1 mouse_genomes_project 11 63619441 63622209 + Fam83g protein_coding processed_transcript MGP_C57BL6NJ_T0030035.1 MGP_C57BL6NJ_G0018837.1 mouse_genomes_project 11 63619769 63645319 + MGP_C57BL6NJ_P0030035 Fam83g protein_coding protein_coding MGP_C57BL6NJ_T0003518.1 MGP_C57BL6NJ_G0003225.1 mouse_genomes_project 11 128911369 128924687 + Myadml2os antisense antisense MGP_C57BL6NJ_T0006409.1 MGP_C57BL6NJ_G0005350.1 mouse_genomes_project 11 61671408 61671799 + 1810063I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0012854.1 MGP_C57BL6NJ_G0010899.1 mouse_genomes_project 11 29817128 29817518 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032073.1 MGP_C57BL6NJ_G0019325.1 mouse_genomes_project 11 93904004 93905699 - MGP_C57BL6NJ_P0032073 Nog protein_coding protein_coding MGP_C57BL6NJ_T0102739.1 MGP_C57BL6NJ_G0040534.1 mouse_genomes_project 11 60105025 60107557 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003358.1 MGP_C57BL6NJ_G0003100.1 mouse_genomes_project 11 69199989 69246149 - Gm12298 antisense antisense MGP_C57BL6NJ_T0006431.1 MGP_C57BL6NJ_G0005368.1 mouse_genomes_project 11 74205259 74213034 - Gm16013 lincRNA lincRNA MGP_C57BL6NJ_T0032423.1 MGP_C57BL6NJ_G0019415.1 mouse_genomes_project 11 102503445 102511099 + MGP_C57BL6NJ_P0032423 Mrpl10 protein_coding protein_coding MGP_C57BL6NJ_T0032424.1 MGP_C57BL6NJ_G0019415.1 mouse_genomes_project 11 102503480 102510404 + MGP_C57BL6NJ_P0032424 Mrpl10 protein_coding protein_coding MGP_C57BL6NJ_T0031989.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92108334 92135197 + MGP_C57BL6NJ_P0031989 Bzrap1 protein_coding protein_coding MGP_C57BL6NJ_T0031990.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92108380 92135197 + MGP_C57BL6NJ_P0031990 Bzrap1 protein_coding protein_coding MGP_C57BL6NJ_T0031991.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92112524 92114189 + Bzrap1 protein_coding processed_transcript MGP_C57BL6NJ_T0031992.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92125399 92128806 + MGP_C57BL6NJ_P0031992 Bzrap1 protein_coding protein_coding MGP_C57BL6NJ_T0031993.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92125806 92135197 + MGP_C57BL6NJ_P0031993 Bzrap1 protein_coding protein_coding MGP_C57BL6NJ_T0031994.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92126361 92135197 + Bzrap1 protein_coding retained_intron MGP_C57BL6NJ_T0031995.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92128061 92135197 + Bzrap1 protein_coding retained_intron MGP_C57BL6NJ_T0031996.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92128220 92129556 + Bzrap1 protein_coding retained_intron MGP_C57BL6NJ_T0031997.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92129562 92134010 + MGP_C57BL6NJ_P0031997 Bzrap1 protein_coding protein_coding MGP_C57BL6NJ_T0031998.1 MGP_C57BL6NJ_G0019303.1 mouse_genomes_project 11 92130843 92132464 + Bzrap1 protein_coding retained_intron MGP_C57BL6NJ_T0099731.1 MGP_C57BL6NJ_G0037777.1 mouse_genomes_project 11 620103 620232 - Gm26393 snRNA snRNA MGP_C57BL6NJ_T0032739.1 MGP_C57BL6NJ_G0019517.1 mouse_genomes_project 11 105721451 105723100 + MGP_C57BL6NJ_P0032739 Gm11567 protein_coding protein_coding MGP_C57BL6NJ_T0101078.1 MGP_C57BL6NJ_G0039124.1 mouse_genomes_project 11 104400020 104400124 - Gm22059 snoRNA snoRNA MGP_C57BL6NJ_T0101015.1 MGP_C57BL6NJ_G0039061.1 mouse_genomes_project 11 8999938 9000066 - Gm26458 snoRNA snoRNA MGP_C57BL6NJ_T0029734.1 MGP_C57BL6NJ_G0018764.1 mouse_genomes_project 11 60371507 60376628 + MGP_C57BL6NJ_P0029734 Olfr315 protein_coding protein_coding MGP_C57BL6NJ_T0029735.1 MGP_C57BL6NJ_G0018764.1 mouse_genomes_project 11 60376208 60377206 + MGP_C57BL6NJ_P0029735 Olfr315 protein_coding protein_coding MGP_C57BL6NJ_T0006486.1 MGP_C57BL6NJ_G0005406.1 mouse_genomes_project 11 100993788 100997970 - lincRNA lincRNA MGP_C57BL6NJ_T0006487.1 MGP_C57BL6NJ_G0005406.1 mouse_genomes_project 11 100995724 100997970 - lincRNA lincRNA MGP_C57BL6NJ_T0012924.1 MGP_C57BL6NJ_G0010969.1 mouse_genomes_project 11 59892938 59893730 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028302.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2067550 2128095 + MGP_C57BL6NJ_P0028302 Ap1b1 protein_coding protein_coding MGP_C57BL6NJ_T0028303.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2067550 2128033 + MGP_C57BL6NJ_P0028303 Ap1b1 protein_coding protein_coding MGP_C57BL6NJ_T0028304.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2067638 2100139 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0028305.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2067660 2101249 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0028306.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2091175 2100139 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0028307.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2091231 2128033 + MGP_C57BL6NJ_P0028307 Ap1b1 protein_coding protein_coding MGP_C57BL6NJ_T0028308.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2116280 2118094 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0028309.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2122672 2125706 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0028310.1 MGP_C57BL6NJ_G0018386.1 mouse_genomes_project 11 2124067 2125725 + Ap1b1 protein_coding processed_transcript MGP_C57BL6NJ_T0102744.1 MGP_C57BL6NJ_G0040539.1 mouse_genomes_project 11 76518833 76519768 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003331.1 MGP_C57BL6NJ_G0003078.1 mouse_genomes_project 11 61079344 61083789 + Gm15755 antisense antisense MGP_C57BL6NJ_T0029185.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49386567 49653760 + MGP_C57BL6NJ_P0029185 Olfr56 protein_coding protein_coding MGP_C57BL6NJ_T0029186.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49386567 49653760 + MGP_C57BL6NJ_P0029186 Olfr56 protein_coding protein_coding MGP_C57BL6NJ_T0029187.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49386567 49653760 + MGP_C57BL6NJ_P0029187 Olfr56 protein_coding protein_coding MGP_C57BL6NJ_T0029192.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49594210 49644880 + Olfr56 protein_coding retained_intron MGP_C57BL6NJ_T0029194.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49594228 49653693 + MGP_C57BL6NJ_P0029194 Olfr56 protein_coding protein_coding MGP_C57BL6NJ_T0029197.1 MGP_C57BL6NJ_G0018603.1 mouse_genomes_project 11 49636471 49653692 + MGP_C57BL6NJ_P0029197 Olfr56 protein_coding protein_coding MGP_C57BL6NJ_T0012920.1 MGP_C57BL6NJ_G0010965.1 mouse_genomes_project 11 58800906 58803200 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031411.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81619372 81629859 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031412.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81619372 81629923 - MGP_C57BL6NJ_P0031412 Nek8 protein_coding protein_coding MGP_C57BL6NJ_T0031413.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81619376 81620654 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031414.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81619787 81629875 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031415.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81620520 81621300 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031416.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81622238 81623095 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031417.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81623296 81629862 - Nek8 protein_coding retained_intron MGP_C57BL6NJ_T0031418.1 MGP_C57BL6NJ_G0019156.1 mouse_genomes_project 11 81624492 81629882 - MGP_C57BL6NJ_P0031418 Nek8 protein_coding protein_coding MGP_C57BL6NJ_T0101084.1 MGP_C57BL6NJ_G0039130.1 mouse_genomes_project 11 113174961 113175096 + Gm22711 snoRNA snoRNA MGP_C57BL6NJ_T0102156.1 MGP_C57BL6NJ_G0040185.1 mouse_genomes_project 11 125380340 125381421 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102157.1 MGP_C57BL6NJ_G0040185.1 mouse_genomes_project 11 125380399 125380831 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0031093.1 MGP_C57BL6NJ_G0019091.1 mouse_genomes_project 11 77937648 77987635 - MGP_C57BL6NJ_P0031093 Sgsm2 protein_coding protein_coding MGP_C57BL6NJ_T0031094.1 MGP_C57BL6NJ_G0019091.1 mouse_genomes_project 11 77937653 77987635 - MGP_C57BL6NJ_P0031094 Sgsm2 protein_coding protein_coding MGP_C57BL6NJ_T0031095.1 MGP_C57BL6NJ_G0019091.1 mouse_genomes_project 11 77944962 77949005 - Sgsm2 protein_coding retained_intron MGP_C57BL6NJ_T0031096.1 MGP_C57BL6NJ_G0019091.1 mouse_genomes_project 11 77955840 77957504 - Sgsm2 protein_coding retained_intron MGP_C57BL6NJ_T0031097.1 MGP_C57BL6NJ_G0019091.1 mouse_genomes_project 11 77955850 77956800 - Sgsm2 protein_coding retained_intron MGP_C57BL6NJ_T0033011.1 MGP_C57BL6NJ_G0019593.1 mouse_genomes_project 11 107582607 107584104 + protein_coding processed_transcript MGP_C57BL6NJ_T0033012.1 MGP_C57BL6NJ_G0019593.1 mouse_genomes_project 11 107582615 107588371 + MGP_C57BL6NJ_P0033012 protein_coding protein_coding MGP_C57BL6NJ_T0101079.1 MGP_C57BL6NJ_G0039125.1 mouse_genomes_project 11 104763219 104763334 + Gm26394 snoRNA snoRNA MGP_C57BL6NJ_T0033961.1 MGP_C57BL6NJ_G0019793.1 mouse_genomes_project 11 123528976 123543345 - MGP_C57BL6NJ_P0033961 Caskin2 protein_coding protein_coding MGP_C57BL6NJ_T0033962.1 MGP_C57BL6NJ_G0019793.1 mouse_genomes_project 11 123529793 123530675 - Caskin2 protein_coding processed_transcript MGP_C57BL6NJ_T0033963.1 MGP_C57BL6NJ_G0019793.1 mouse_genomes_project 11 123534529 123537817 - MGP_C57BL6NJ_P0033963 Caskin2 protein_coding protein_coding MGP_C57BL6NJ_T0033964.1 MGP_C57BL6NJ_G0019793.1 mouse_genomes_project 11 123536491 123543354 - MGP_C57BL6NJ_P0033964 Caskin2 protein_coding protein_coding MGP_C57BL6NJ_T0033588.1 MGP_C57BL6NJ_G0019711.1 mouse_genomes_project 11 114000793 114292139 - MGP_C57BL6NJ_P0033588 Pitpnc1 protein_coding protein_coding MGP_C57BL6NJ_T0033589.1 MGP_C57BL6NJ_G0019711.1 mouse_genomes_project 11 114000793 114140058 - MGP_C57BL6NJ_P0033589 Pitpnc1 protein_coding protein_coding MGP_C57BL6NJ_T0033590.1 MGP_C57BL6NJ_G0019711.1 mouse_genomes_project 11 114019152 114151960 - MGP_C57BL6NJ_P0033590 Pitpnc1 protein_coding protein_coding MGP_C57BL6NJ_T0033591.1 MGP_C57BL6NJ_G0019711.1 mouse_genomes_project 11 114123025 114139947 - Pitpnc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030340.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71560025 71566761 + MGP_C57BL6NJ_P0030340 Aurkb protein_coding protein_coding MGP_C57BL6NJ_T0030341.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71560030 71566761 + MGP_C57BL6NJ_P0030341 Aurkb protein_coding protein_coding MGP_C57BL6NJ_T0030342.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71560049 71563315 + Aurkb protein_coding processed_transcript MGP_C57BL6NJ_T0030343.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71560068 71563393 + Aurkb protein_coding retained_intron MGP_C57BL6NJ_T0030344.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71563073 71564170 + Aurkb protein_coding retained_intron MGP_C57BL6NJ_T0030345.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71563624 71564172 + Aurkb protein_coding retained_intron MGP_C57BL6NJ_T0030346.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71563665 71565834 + Aurkb protein_coding retained_intron MGP_C57BL6NJ_T0030347.1 MGP_C57BL6NJ_G0018906.1 mouse_genomes_project 11 71565659 71566236 + Aurkb protein_coding processed_transcript MGP_C57BL6NJ_T0029792.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61110895 61156938 - MGP_C57BL6NJ_P0029792 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029793.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61110905 61156946 - MGP_C57BL6NJ_P0029793 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029794.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61132467 61156938 - MGP_C57BL6NJ_P0029794 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029795.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61132473 61156852 - MGP_C57BL6NJ_P0029795 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029796.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61142558 61156938 - MGP_C57BL6NJ_P0029796 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029797.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61142780 61154439 - MGP_C57BL6NJ_P0029797 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029798.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61142812 61156855 - MGP_C57BL6NJ_P0029798 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0029799.1 MGP_C57BL6NJ_G0018789.1 mouse_genomes_project 11 61142973 61158125 - MGP_C57BL6NJ_P0029799 Snap47 protein_coding protein_coding MGP_C57BL6NJ_T0101027.1 MGP_C57BL6NJ_G0039073.1 mouse_genomes_project 11 28833587 28833727 + Gm22588 snoRNA snoRNA MGP_C57BL6NJ_T0029745.1 MGP_C57BL6NJ_G0018771.1 mouse_genomes_project 11 60502402 60521045 + MGP_C57BL6NJ_P0029745 2810021J22Rik protein_coding protein_coding MGP_C57BL6NJ_T0029746.1 MGP_C57BL6NJ_G0018771.1 mouse_genomes_project 11 60502453 60515761 + MGP_C57BL6NJ_P0029746 2810021J22Rik protein_coding protein_coding MGP_C57BL6NJ_T0029264.1 MGP_C57BL6NJ_G0018629.1 mouse_genomes_project 11 50640516 50724644 + MGP_C57BL6NJ_P0029264 Rnf130 protein_coding protein_coding MGP_C57BL6NJ_T0029265.1 MGP_C57BL6NJ_G0018629.1 mouse_genomes_project 11 50640518 50724639 + MGP_C57BL6NJ_P0029265 Rnf130 protein_coding protein_coding MGP_C57BL6NJ_T0029266.1 MGP_C57BL6NJ_G0018629.1 mouse_genomes_project 11 50711626 50724644 + Rnf130 protein_coding processed_transcript MGP_C57BL6NJ_T0012927.1 MGP_C57BL6NJ_G0010972.1 mouse_genomes_project 11 60241205 60242235 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029983.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63352447 63358112 - MGP_C57BL6NJ_P0029983 Rnf112 protein_coding protein_coding MGP_C57BL6NJ_T0029984.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63352447 63358011 - MGP_C57BL6NJ_P0029984 Rnf112 protein_coding protein_coding MGP_C57BL6NJ_T0029985.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63352447 63358011 - MGP_C57BL6NJ_P0029985 Rnf112 protein_coding protein_coding MGP_C57BL6NJ_T0029986.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63356050 63358137 - Rnf112 protein_coding processed_transcript MGP_C57BL6NJ_T0029987.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63356268 63357925 - Rnf112 protein_coding processed_transcript MGP_C57BL6NJ_T0029988.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63356740 63357948 - Rnf112 protein_coding processed_transcript MGP_C57BL6NJ_T0029989.1 MGP_C57BL6NJ_G0018830.1 mouse_genomes_project 11 63356921 63357939 - Rnf112 protein_coding processed_transcript MGP_C57BL6NJ_T0028776.1 MGP_C57BL6NJ_G0018495.1 mouse_genomes_project 11 27829148 27904474 + MGP_C57BL6NJ_P0028776 Efemp1 protein_coding protein_coding MGP_C57BL6NJ_T0028777.1 MGP_C57BL6NJ_G0018495.1 mouse_genomes_project 11 27829188 27899257 + Efemp1 protein_coding processed_transcript MGP_C57BL6NJ_T0028778.1 MGP_C57BL6NJ_G0018495.1 mouse_genomes_project 11 27893395 27904474 + MGP_C57BL6NJ_P0028778 Efemp1 protein_coding protein_coding MGP_C57BL6NJ_T0009935.1 MGP_C57BL6NJ_G0008020.1 mouse_genomes_project 11 103222843 103222914 + Mir6927 miRNA miRNA MGP_C57BL6NJ_T0012916.1 MGP_C57BL6NJ_G0010961.1 mouse_genomes_project 11 56291764 56292007 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029657.1 MGP_C57BL6NJ_G0018729.1 mouse_genomes_project 11 58877797 58893956 + MGP_C57BL6NJ_P0029657 Mfap3 protein_coding protein_coding MGP_C57BL6NJ_T0029658.1 MGP_C57BL6NJ_G0018729.1 mouse_genomes_project 11 58877819 58889235 + Mfap3 protein_coding retained_intron MGP_C57BL6NJ_T0029659.1 MGP_C57BL6NJ_G0018729.1 mouse_genomes_project 11 58877820 58893955 + MGP_C57BL6NJ_P0029659 Mfap3 protein_coding protein_coding MGP_C57BL6NJ_T0029660.1 MGP_C57BL6NJ_G0018729.1 mouse_genomes_project 11 58882116 58889672 + MGP_C57BL6NJ_P0029660 Mfap3 protein_coding protein_coding MGP_C57BL6NJ_T0006511.1 MGP_C57BL6NJ_G0005424.1 mouse_genomes_project 11 117626941 117628834 + Gm11682 lincRNA lincRNA MGP_C57BL6NJ_T0032731.1 MGP_C57BL6NJ_G0019509.1 mouse_genomes_project 11 105626132 105627211 - MGP_C57BL6NJ_P0032731 Gm11596 protein_coding protein_coding MGP_C57BL6NJ_T0012809.1 MGP_C57BL6NJ_G0010854.1 mouse_genomes_project 11 18615972 18616293 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032918.1 MGP_C57BL6NJ_G0019571.1 mouse_genomes_project 11 107117763 107121377 - MGP_C57BL6NJ_P0032918 Psmc3ip protein_coding protein_coding MGP_C57BL6NJ_T0032919.1 MGP_C57BL6NJ_G0019571.1 mouse_genomes_project 11 107118072 107121341 - Psmc3ip protein_coding retained_intron MGP_C57BL6NJ_T0032920.1 MGP_C57BL6NJ_G0019571.1 mouse_genomes_project 11 107118097 107120101 - Psmc3ip protein_coding retained_intron MGP_C57BL6NJ_T0032921.1 MGP_C57BL6NJ_G0019571.1 mouse_genomes_project 11 107118427 107121317 - MGP_C57BL6NJ_P0032921 Psmc3ip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011572.1 MGP_C57BL6NJ_G0009657.1 mouse_genomes_project 11 101588106 101588242 - Gm27605 misc_RNA misc_RNA MGP_C57BL6NJ_T0003332.1 MGP_C57BL6NJ_G0003079.1 mouse_genomes_project 11 61516011 61523385 - Gm12264 antisense antisense MGP_C57BL6NJ_T0032394.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102354646 102367456 - MGP_C57BL6NJ_P0032394 Cdk5rap3 protein_coding protein_coding MGP_C57BL6NJ_T0032395.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102354646 102367456 - MGP_C57BL6NJ_P0032395 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032396.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102355036 102355979 - Cdk5rap3 protein_coding retained_intron MGP_C57BL6NJ_T0032397.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102360454 102361868 - Cdk5rap3 protein_coding retained_intron MGP_C57BL6NJ_T0032398.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102360943 102367352 - MGP_C57BL6NJ_P0032398 Cdk5rap3 protein_coding protein_coding MGP_C57BL6NJ_T0032399.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102360960 102367067 - MGP_C57BL6NJ_P0032399 Cdk5rap3 protein_coding protein_coding MGP_C57BL6NJ_T0032400.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102360982 102367389 - MGP_C57BL6NJ_P0032400 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032401.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102361215 102367326 - MGP_C57BL6NJ_P0032401 Cdk5rap3 protein_coding protein_coding MGP_C57BL6NJ_T0032402.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102361236 102367374 - MGP_C57BL6NJ_P0032402 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032403.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102361346 102367374 - MGP_C57BL6NJ_P0032403 Cdk5rap3 protein_coding protein_coding MGP_C57BL6NJ_T0032404.1 MGP_C57BL6NJ_G0019408.1 mouse_genomes_project 11 102361683 102367327 - Cdk5rap3 protein_coding retained_intron MGP_C57BL6NJ_T0031643.1 MGP_C57BL6NJ_G0019216.1 mouse_genomes_project 11 85848940 85850496 + MGP_C57BL6NJ_P0031643 Ccl12 protein_coding protein_coding MGP_C57BL6NJ_T0031644.1 MGP_C57BL6NJ_G0019216.1 mouse_genomes_project 11 85848947 85850463 + Ccl12 protein_coding processed_transcript MGP_C57BL6NJ_T0033106.1 MGP_C57BL6NJ_G0019612.1 mouse_genomes_project 11 108326243 108327390 - MGP_C57BL6NJ_P0033106 Pyy protein_coding protein_coding MGP_C57BL6NJ_T0033107.1 MGP_C57BL6NJ_G0019612.1 mouse_genomes_project 11 108326243 108327400 - MGP_C57BL6NJ_P0033107 Pyy protein_coding protein_coding MGP_C57BL6NJ_T0033108.1 MGP_C57BL6NJ_G0019612.1 mouse_genomes_project 11 108326247 108326984 - MGP_C57BL6NJ_P0033108 Pyy protein_coding protein_coding MGP_C57BL6NJ_T0033109.1 MGP_C57BL6NJ_G0019612.1 mouse_genomes_project 11 108326528 108327400 - Pyy protein_coding retained_intron MGP_C57BL6NJ_T0031018.1 MGP_C57BL6NJ_G0019055.1 mouse_genomes_project 11 76332704 76337124 - MGP_C57BL6NJ_P0031018 Olfr1 protein_coding protein_coding MGP_C57BL6NJ_T0031019.1 MGP_C57BL6NJ_G0019055.1 mouse_genomes_project 11 76333060 76337124 - MGP_C57BL6NJ_P0031019 Olfr1 protein_coding protein_coding MGP_C57BL6NJ_T0033608.1 MGP_C57BL6NJ_G0019717.1 mouse_genomes_project 11 114792751 115216661 - MGP_C57BL6NJ_P0033608 Prkca protein_coding protein_coding MGP_C57BL6NJ_T0033609.1 MGP_C57BL6NJ_G0019717.1 mouse_genomes_project 11 114797541 114839751 - MGP_C57BL6NJ_P0033609 Prkca protein_coding protein_coding MGP_C57BL6NJ_T0033610.1 MGP_C57BL6NJ_G0019717.1 mouse_genomes_project 11 114838452 114872708 - Prkca protein_coding processed_transcript MGP_C57BL6NJ_T0033611.1 MGP_C57BL6NJ_G0019717.1 mouse_genomes_project 11 115057158 115216381 - Prkca protein_coding processed_transcript MGP_C57BL6NJ_T0006394.1 MGP_C57BL6NJ_G0005337.1 mouse_genomes_project 11 46711172 46718059 - 2310031A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0028411.1 MGP_C57BL6NJ_G0018408.1 mouse_genomes_project 11 3289317 3395478 - MGP_C57BL6NJ_P0028411 Nudcd3 protein_coding protein_coding MGP_C57BL6NJ_T0028412.1 MGP_C57BL6NJ_G0018408.1 mouse_genomes_project 11 3289612 3303012 - Nudcd3 protein_coding processed_transcript MGP_C57BL6NJ_T0028413.1 MGP_C57BL6NJ_G0018408.1 mouse_genomes_project 11 3290084 3386336 - MGP_C57BL6NJ_P0028413 Nudcd3 protein_coding protein_coding MGP_C57BL6NJ_T0028414.1 MGP_C57BL6NJ_G0018408.1 mouse_genomes_project 11 3306527 3386336 - Nudcd3 protein_coding retained_intron MGP_C57BL6NJ_T0029476.1 MGP_C57BL6NJ_G0018684.1 mouse_genomes_project 11 54406940 54413993 + Gdf9 protein_coding processed_transcript MGP_C57BL6NJ_T0029477.1 MGP_C57BL6NJ_G0018684.1 mouse_genomes_project 11 54408759 54409698 + Gdf9 protein_coding processed_transcript MGP_C57BL6NJ_T0029478.1 MGP_C57BL6NJ_G0018684.1 mouse_genomes_project 11 54409216 54414995 + MGP_C57BL6NJ_P0029478 Gdf9 protein_coding protein_coding MGP_C57BL6NJ_T0003467.1 MGP_C57BL6NJ_G0003187.1 mouse_genomes_project 11 112756239 112758273 - antisense antisense MGP_C57BL6NJ_T0029040.1 MGP_C57BL6NJ_G0018562.1 mouse_genomes_project 11 42281783 42298415 - MGP_C57BL6NJ_P0029040 Gabra6 protein_coding protein_coding MGP_C57BL6NJ_T0029041.1 MGP_C57BL6NJ_G0018562.1 mouse_genomes_project 11 42281784 42298417 - MGP_C57BL6NJ_P0029041 Gabra6 protein_coding protein_coding MGP_C57BL6NJ_T0029042.1 MGP_C57BL6NJ_G0018562.1 mouse_genomes_project 11 42282606 42298438 - MGP_C57BL6NJ_P0029042 Gabra6 protein_coding protein_coding MGP_C57BL6NJ_T0028473.1 MGP_C57BL6NJ_G0018422.1 mouse_genomes_project 11 3877620 3879605 - Wap protein_coding processed_transcript MGP_C57BL6NJ_T0028474.1 MGP_C57BL6NJ_G0018422.1 mouse_genomes_project 11 3877620 3880580 - MGP_C57BL6NJ_P0028474 Wap protein_coding protein_coding MGP_C57BL6NJ_T0028475.1 MGP_C57BL6NJ_G0018422.1 mouse_genomes_project 11 3877677 3879594 - Wap protein_coding processed_transcript MGP_C57BL6NJ_T0032090.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95211460 95385748 - MGP_C57BL6NJ_P0032090 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032091.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95228134 95286661 - MGP_C57BL6NJ_P0032091 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032092.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95270934 95385726 - MGP_C57BL6NJ_P0032092 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032093.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95340466 95385729 - MGP_C57BL6NJ_P0032093 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032094.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95345524 95385740 - MGP_C57BL6NJ_P0032094 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032095.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95362386 95378581 - MGP_C57BL6NJ_P0032095 Stxbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032096.1 MGP_C57BL6NJ_G0019332.1 mouse_genomes_project 11 95377874 95385737 - Stxbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0003310.1 MGP_C57BL6NJ_G0003060.1 mouse_genomes_project 11 53148578 53158703 + A630014C17Rik antisense antisense MGP_C57BL6NJ_T0012944.1 MGP_C57BL6NJ_G0010989.1 mouse_genomes_project 11 64318260 64318561 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101031.1 MGP_C57BL6NJ_G0039077.1 mouse_genomes_project 11 49126106 49126225 + Gm24422 snoRNA snoRNA MGP_C57BL6NJ_T0102752.1 MGP_C57BL6NJ_G0040547.1 mouse_genomes_project 11 87165849 87176768 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030041.1 MGP_C57BL6NJ_G0018840.1 mouse_genomes_project 11 63825161 63885177 - MGP_C57BL6NJ_P0030041 Akap10 protein_coding protein_coding MGP_C57BL6NJ_T0030042.1 MGP_C57BL6NJ_G0018840.1 mouse_genomes_project 11 63825526 63832628 - Akap10 protein_coding processed_transcript MGP_C57BL6NJ_T0030043.1 MGP_C57BL6NJ_G0018840.1 mouse_genomes_project 11 63826870 63884935 - MGP_C57BL6NJ_P0030043 Akap10 protein_coding protein_coding MGP_C57BL6NJ_T0030044.1 MGP_C57BL6NJ_G0018840.1 mouse_genomes_project 11 63846622 63885151 - MGP_C57BL6NJ_P0030044 Akap10 protein_coding protein_coding MGP_C57BL6NJ_T0030045.1 MGP_C57BL6NJ_G0018840.1 mouse_genomes_project 11 63876828 63885132 - Akap10 protein_coding processed_transcript MGP_C57BL6NJ_T0003296.1 MGP_C57BL6NJ_G0003047.1 mouse_genomes_project 11 43299883 43354085 - Gm12147 antisense antisense MGP_C57BL6NJ_T0012826.1 MGP_C57BL6NJ_G0010871.1 mouse_genomes_project 11 20922560 20924465 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030725.1 MGP_C57BL6NJ_G0018991.1 mouse_genomes_project 11 73206824 73208365 + MGP_C57BL6NJ_P0030725 Gltpd2 protein_coding protein_coding MGP_C57BL6NJ_T0030726.1 MGP_C57BL6NJ_G0018991.1 mouse_genomes_project 11 73207267 73208148 + MGP_C57BL6NJ_P0030726 Gltpd2 protein_coding protein_coding MGP_C57BL6NJ_T0031124.1 MGP_C57BL6NJ_G0019097.1 mouse_genomes_project 11 78285546 78300041 - MGP_C57BL6NJ_P0031124 Dph1 protein_coding protein_coding MGP_C57BL6NJ_T0031125.1 MGP_C57BL6NJ_G0019097.1 mouse_genomes_project 11 78285599 78291223 - Dph1 protein_coding retained_intron MGP_C57BL6NJ_T0031127.1 MGP_C57BL6NJ_G0019097.1 mouse_genomes_project 11 78286199 78289212 - Dph1 protein_coding processed_transcript MGP_C57BL6NJ_T0031128.1 MGP_C57BL6NJ_G0019097.1 mouse_genomes_project 11 78287092 78291415 - Dph1 protein_coding processed_transcript MGP_C57BL6NJ_T0031129.1 MGP_C57BL6NJ_G0019097.1 mouse_genomes_project 11 78288724 78300763 - MGP_C57BL6NJ_P0031129 Dph1 protein_coding protein_coding MGP_C57BL6NJ_T0029360.1 MGP_C57BL6NJ_G0018653.1 mouse_genomes_project 11 51793783 51806877 + MGP_C57BL6NJ_P0029360 Zfp354a protein_coding protein_coding MGP_C57BL6NJ_T0029361.1 MGP_C57BL6NJ_G0018653.1 mouse_genomes_project 11 51793785 51794598 + Zfp354a protein_coding processed_transcript MGP_C57BL6NJ_T0029362.1 MGP_C57BL6NJ_G0018653.1 mouse_genomes_project 11 51793820 51808314 + MGP_C57BL6NJ_P0029362 Zfp354a protein_coding protein_coding MGP_C57BL6NJ_T0029363.1 MGP_C57BL6NJ_G0018653.1 mouse_genomes_project 11 51794341 51806249 + MGP_C57BL6NJ_P0029363 Zfp354a protein_coding protein_coding MGP_C57BL6NJ_T0029364.1 MGP_C57BL6NJ_G0018653.1 mouse_genomes_project 11 51794648 51806200 + MGP_C57BL6NJ_P0029364 Zfp354a protein_coding protein_coding MGP_C57BL6NJ_T0009912.1 MGP_C57BL6NJ_G0007997.1 mouse_genomes_project 11 81510791 81510863 - Mir451b miRNA miRNA MGP_C57BL6NJ_T0032699.1 MGP_C57BL6NJ_G0019481.1 mouse_genomes_project 11 105122706 105132072 - Krt26 protein_coding processed_transcript MGP_C57BL6NJ_T0032700.1 MGP_C57BL6NJ_G0019481.1 mouse_genomes_project 11 105122770 105132073 - MGP_C57BL6NJ_P0032700 Krt26 protein_coding protein_coding MGP_C57BL6NJ_T0031440.1 MGP_C57BL6NJ_G0019161.1 mouse_genomes_project 11 81665206 81706199 - MGP_C57BL6NJ_P0031440 Supt6 protein_coding protein_coding MGP_C57BL6NJ_T0031441.1 MGP_C57BL6NJ_G0019161.1 mouse_genomes_project 11 81665488 81682135 - Supt6 protein_coding retained_intron MGP_C57BL6NJ_T0006352.1 MGP_C57BL6NJ_G0005302.1 mouse_genomes_project 11 21741036 21760125 + 1700061J23Rik lincRNA lincRNA MGP_C57BL6NJ_T0032922.1 MGP_C57BL6NJ_G0019572.1 mouse_genomes_project 11 107122262 107157494 - Fam134c protein_coding processed_transcript MGP_C57BL6NJ_T0032923.1 MGP_C57BL6NJ_G0019572.1 mouse_genomes_project 11 107122453 107157494 - MGP_C57BL6NJ_P0032923 Fam134c protein_coding protein_coding MGP_C57BL6NJ_T0032924.1 MGP_C57BL6NJ_G0019572.1 mouse_genomes_project 11 107122459 107157308 - MGP_C57BL6NJ_P0032924 Fam134c protein_coding protein_coding MGP_C57BL6NJ_T0032925.1 MGP_C57BL6NJ_G0019572.1 mouse_genomes_project 11 107123940 107157366 - Fam134c protein_coding processed_transcript MGP_C57BL6NJ_T0032926.1 MGP_C57BL6NJ_G0019572.1 mouse_genomes_project 11 107124523 107157494 - Fam134c protein_coding processed_transcript MGP_C57BL6NJ_T0033350.1 MGP_C57BL6NJ_G0019655.1 mouse_genomes_project 11 109826670 109891350 - MGP_C57BL6NJ_P0033350 Lrrc37a protein_coding protein_coding MGP_C57BL6NJ_T0033180.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108657220 108665572 + MGP_C57BL6NJ_P0033180 Rundc3a protein_coding protein_coding MGP_C57BL6NJ_T0033181.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108657220 108665572 + MGP_C57BL6NJ_P0033181 Rundc3a protein_coding protein_coding MGP_C57BL6NJ_T0033182.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108657220 108665572 + MGP_C57BL6NJ_P0033182 Rundc3a protein_coding protein_coding MGP_C57BL6NJ_T0033183.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108657220 108666373 + MGP_C57BL6NJ_P0033183 Rundc3a protein_coding protein_coding MGP_C57BL6NJ_T0033184.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108661681 108666373 + Rundc3a protein_coding retained_intron MGP_C57BL6NJ_T0033185.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108661936 108663597 + Rundc3a protein_coding processed_transcript MGP_C57BL6NJ_T0033186.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108662984 108666047 + Rundc3a protein_coding processed_transcript MGP_C57BL6NJ_T0033187.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108663381 108666044 + Rundc3a protein_coding processed_transcript MGP_C57BL6NJ_T0033188.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108663573 108665970 + Rundc3a protein_coding processed_transcript MGP_C57BL6NJ_T0033189.1 MGP_C57BL6NJ_G0019624.1 mouse_genomes_project 11 108663675 108664603 + Rundc3a protein_coding processed_transcript MGP_C57BL6NJ_T0003457.1 MGP_C57BL6NJ_G0003178.1 mouse_genomes_project 11 109716099 109721475 + Arhgap27os3 antisense antisense MGP_C57BL6NJ_T0102410.1 MGP_C57BL6NJ_G0040329.1 mouse_genomes_project 11 77266863 77306662 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102411.1 MGP_C57BL6NJ_G0040329.1 mouse_genomes_project 11 77267338 77268274 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0012872.1 MGP_C57BL6NJ_G0010917.1 mouse_genomes_project 11 40266405 40266931 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101013.1 MGP_C57BL6NJ_G0039059.1 mouse_genomes_project 11 3862483 3862619 - Snora5c snoRNA snoRNA MGP_C57BL6NJ_T0099737.1 MGP_C57BL6NJ_G0037783.1 mouse_genomes_project 11 16890533 16890635 + Gm23093 snRNA snRNA MGP_C57BL6NJ_T0009928.1 MGP_C57BL6NJ_G0008013.1 mouse_genomes_project 11 101294084 101294176 - Mir3063 miRNA miRNA MGP_C57BL6NJ_T0013033.1 MGP_C57BL6NJ_G0011078.1 mouse_genomes_project 11 103547284 103547728 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012779.1 MGP_C57BL6NJ_G0010824.1 mouse_genomes_project 11 8880290 8881120 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028894.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31412389 31425105 - MGP_C57BL6NJ_P0028894 Rhbdf1 protein_coding protein_coding MGP_C57BL6NJ_T0028895.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31412390 31420122 - Rhbdf1 protein_coding retained_intron MGP_C57BL6NJ_T0028896.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31412391 31425085 - MGP_C57BL6NJ_P0028896 Rhbdf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028897.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31412608 31413944 - MGP_C57BL6NJ_P0028897 Rhbdf1 protein_coding protein_coding MGP_C57BL6NJ_T0028898.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31412754 31413705 - Rhbdf1 protein_coding retained_intron MGP_C57BL6NJ_T0028899.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31413203 31414075 - Rhbdf1 protein_coding retained_intron MGP_C57BL6NJ_T0028900.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31417090 31425085 - MGP_C57BL6NJ_P0028900 Rhbdf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028901.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31417872 31425049 - MGP_C57BL6NJ_P0028901 Rhbdf1 protein_coding protein_coding MGP_C57BL6NJ_T0028902.1 MGP_C57BL6NJ_G0018522.1 mouse_genomes_project 11 31418813 31425064 - MGP_C57BL6NJ_P0028902 Rhbdf1 protein_coding protein_coding MGP_C57BL6NJ_T0032751.1 MGP_C57BL6NJ_G0019528.1 mouse_genomes_project 11 105958721 105963921 - MGP_C57BL6NJ_P0032751 Krt31 protein_coding protein_coding MGP_C57BL6NJ_T0017753.1 MGP_C57BL6NJ_G0015616.1 mouse_genomes_project 11 127732775 127756184 + Gm11762 processed_transcript processed_transcript MGP_C57BL6NJ_T0006447.1 MGP_C57BL6NJ_G0005381.1 mouse_genomes_project 11 83306904 83307695 + Gm11205 lincRNA lincRNA MGP_C57BL6NJ_T0102768.1 MGP_C57BL6NJ_G0040563.1 mouse_genomes_project 11 105840626 105840866 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032459.1 MGP_C57BL6NJ_G0019421.1 mouse_genomes_project 11 102825851 102841193 + MGP_C57BL6NJ_P0032459 Mrpl45 protein_coding protein_coding MGP_C57BL6NJ_T0032460.1 MGP_C57BL6NJ_G0019421.1 mouse_genomes_project 11 102826043 102832055 + MGP_C57BL6NJ_P0032460 Mrpl45 protein_coding protein_coding MGP_C57BL6NJ_T0033676.1 MGP_C57BL6NJ_G0019730.1 mouse_genomes_project 11 116672485 116726015 - MGP_C57BL6NJ_P0033676 Fam20a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033677.1 MGP_C57BL6NJ_G0019730.1 mouse_genomes_project 11 116676211 116679154 - Fam20a protein_coding retained_intron MGP_C57BL6NJ_T0033678.1 MGP_C57BL6NJ_G0019730.1 mouse_genomes_project 11 116677370 116685691 - Fam20a protein_coding retained_intron MGP_C57BL6NJ_T0003304.1 MGP_C57BL6NJ_G0003055.1 mouse_genomes_project 11 51374916 51380379 - Gm12200 antisense antisense MGP_C57BL6NJ_T0009863.1 MGP_C57BL6NJ_G0007948.1 mouse_genomes_project 11 44599818 44599872 + Gm22121 miRNA miRNA MGP_C57BL6NJ_T0029356.1 MGP_C57BL6NJ_G0018650.1 mouse_genomes_project 11 51655494 51663763 + MGP_C57BL6NJ_P0029356 Olfr1377 protein_coding protein_coding MGP_C57BL6NJ_T0029357.1 MGP_C57BL6NJ_G0018650.1 mouse_genomes_project 11 51658185 51664070 + MGP_C57BL6NJ_P0029357 Olfr1377 protein_coding protein_coding MGP_C57BL6NJ_T0003507.1 MGP_C57BL6NJ_G0003218.1 mouse_genomes_project 11 126531119 126541915 - Gm11747 antisense antisense MGP_C57BL6NJ_T0028437.1 MGP_C57BL6NJ_G0018415.1 mouse_genomes_project 11 3634054 3638249 + MGP_C57BL6NJ_P0028437 Ppia protein_coding protein_coding MGP_C57BL6NJ_T0028438.1 MGP_C57BL6NJ_G0018415.1 mouse_genomes_project 11 3634479 3637049 + Ppia protein_coding retained_intron MGP_C57BL6NJ_T0028439.1 MGP_C57BL6NJ_G0018415.1 mouse_genomes_project 11 3634487 3638244 + Ppia protein_coding retained_intron MGP_C57BL6NJ_T0003262.1 MGP_C57BL6NJ_G0003021.1 mouse_genomes_project 11 1661404 1669662 - Gm11961 antisense antisense MGP_C57BL6NJ_T0003263.1 MGP_C57BL6NJ_G0003021.1 mouse_genomes_project 11 1667271 1671907 - Gm11961 antisense antisense MGP_C57BL6NJ_T0032612.1 MGP_C57BL6NJ_G0019461.1 mouse_genomes_project 11 104360252 104373418 + MGP_C57BL6NJ_P0032612 Psmd3 protein_coding protein_coding MGP_C57BL6NJ_T0032613.1 MGP_C57BL6NJ_G0019461.1 mouse_genomes_project 11 104360263 104369957 + Psmd3 protein_coding retained_intron MGP_C57BL6NJ_T0032614.1 MGP_C57BL6NJ_G0019461.1 mouse_genomes_project 11 104360289 104372488 + Psmd3 protein_coding retained_intron MGP_C57BL6NJ_T0032615.1 MGP_C57BL6NJ_G0019461.1 mouse_genomes_project 11 104365485 104371279 + MGP_C57BL6NJ_P0032615 Psmd3 protein_coding protein_coding MGP_C57BL6NJ_T0032616.1 MGP_C57BL6NJ_G0019461.1 mouse_genomes_project 11 104367900 104368909 + Psmd3 protein_coding retained_intron MGP_C57BL6NJ_T0003303.1 MGP_C57BL6NJ_G0003054.1 mouse_genomes_project 11 51372504 51373750 - Gm12199 antisense antisense MGP_C57BL6NJ_T0012867.1 MGP_C57BL6NJ_G0010912.1 mouse_genomes_project 11 35243145 35243824 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028100.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 95559 154550 + MGP_C57BL6NJ_P0028100 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028101.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 95846 120050 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0028102.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 95846 154557 + MGP_C57BL6NJ_P0028102 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028103.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 95872 106601 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0028104.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 95917 117797 + MGP_C57BL6NJ_P0028104 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028105.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 96178 154554 + MGP_C57BL6NJ_P0028105 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028106.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 96204 154556 + MGP_C57BL6NJ_P0028106 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028107.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 96813 154555 + MGP_C57BL6NJ_P0028107 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028108.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 125478 140097 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0028109.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 125478 140060 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0028110.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 125524 149368 + MGP_C57BL6NJ_P0028110 Eif4enif1 protein_coding protein_coding MGP_C57BL6NJ_T0028111.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 144137 150944 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0028112.1 MGP_C57BL6NJ_G0018346.1 mouse_genomes_project 11 145463 149350 + Eif4enif1 protein_coding retained_intron MGP_C57BL6NJ_T0032425.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102512513 102531872 + MGP_C57BL6NJ_P0032425 Osbpl7 protein_coding protein_coding MGP_C57BL6NJ_T0032426.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102512705 102514709 + Osbpl7 protein_coding processed_transcript MGP_C57BL6NJ_T0032427.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102512705 102531872 + MGP_C57BL6NJ_P0032427 Osbpl7 protein_coding protein_coding MGP_C57BL6NJ_T0032428.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102514211 102514861 + Osbpl7 protein_coding retained_intron MGP_C57BL6NJ_T0032429.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102516381 102520323 + Osbpl7 protein_coding retained_intron MGP_C57BL6NJ_T0032430.1 MGP_C57BL6NJ_G0019416.1 mouse_genomes_project 11 102529850 102531239 + Osbpl7 protein_coding retained_intron MGP_C57BL6NJ_T0003284.1 MGP_C57BL6NJ_G0003036.1 mouse_genomes_project 11 22844765 22857042 - 4930538E20Rik antisense antisense MGP_C57BL6NJ_T0003285.1 MGP_C57BL6NJ_G0003036.1 mouse_genomes_project 11 22851110 22856999 - 4930538E20Rik antisense antisense MGP_C57BL6NJ_T0033506.1 MGP_C57BL6NJ_G0019695.1 mouse_genomes_project 11 112940603 112942198 - MGP_C57BL6NJ_P0033506 Gh protein_coding protein_coding MGP_C57BL6NJ_T0031876.1 MGP_C57BL6NJ_G0019277.1 mouse_genomes_project 11 90074796 90109439 + MGP_C57BL6NJ_P0031876 Tbx4 protein_coding protein_coding MGP_C57BL6NJ_T0031877.1 MGP_C57BL6NJ_G0019277.1 mouse_genomes_project 11 90078437 90109441 + MGP_C57BL6NJ_P0031877 Tbx4 protein_coding protein_coding MGP_C57BL6NJ_T0031878.1 MGP_C57BL6NJ_G0019277.1 mouse_genomes_project 11 90088756 90109439 + MGP_C57BL6NJ_P0031878 Tbx4 protein_coding protein_coding MGP_C57BL6NJ_T0028767.1 MGP_C57BL6NJ_G0018492.1 mouse_genomes_project 11 25386366 25386988 + MGP_C57BL6NJ_P0028767 Gm6899 protein_coding protein_coding MGP_C57BL6NJ_T0033955.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123486698 123515820 + MGP_C57BL6NJ_P0033955 protein_coding protein_coding MGP_C57BL6NJ_T0033956.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123486699 123516144 + MGP_C57BL6NJ_P0033956 protein_coding protein_coding MGP_C57BL6NJ_T0033957.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123486710 123516063 + MGP_C57BL6NJ_P0033957 protein_coding protein_coding MGP_C57BL6NJ_T0033958.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123487977 123502056 + protein_coding processed_transcript MGP_C57BL6NJ_T0033959.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123500829 123528827 + MGP_C57BL6NJ_P0033959 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033960.1 MGP_C57BL6NJ_G0019792.1 mouse_genomes_project 11 123518831 123521772 + MGP_C57BL6NJ_P0033960 protein_coding protein_coding MGP_C57BL6NJ_T0033575.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113804821 113913965 - MGP_C57BL6NJ_P0033575 Bptf protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033576.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113804822 113914277 - MGP_C57BL6NJ_P0033576 Bptf protein_coding protein_coding MGP_C57BL6NJ_T0033577.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113804824 113914617 - MGP_C57BL6NJ_P0033577 Bptf protein_coding protein_coding MGP_C57BL6NJ_T0033578.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113804824 113914617 - MGP_C57BL6NJ_P0033578 Bptf protein_coding protein_coding MGP_C57BL6NJ_T0033579.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113807245 113815491 - Bptf protein_coding processed_transcript MGP_C57BL6NJ_T0033580.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113814825 113819070 - Bptf protein_coding processed_transcript MGP_C57BL6NJ_T0033581.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113818460 113824469 - MGP_C57BL6NJ_P0033581 Bptf protein_coding protein_coding MGP_C57BL6NJ_T0033582.1 MGP_C57BL6NJ_G0019709.1 mouse_genomes_project 11 113832068 113839585 - MGP_C57BL6NJ_P0033582 Bptf protein_coding protein_coding MGP_C57BL6NJ_T0006380.1 MGP_C57BL6NJ_G0005324.1 mouse_genomes_project 11 34276248 34278441 + Gm12711 lincRNA lincRNA MGP_C57BL6NJ_T0028234.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1154105 1160648 - Ccdc157 protein_coding processed_transcript MGP_C57BL6NJ_T0028235.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1154105 1173279 - MGP_C57BL6NJ_P0028235 Ccdc157 protein_coding protein_coding MGP_C57BL6NJ_T0028236.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1154105 1173281 - MGP_C57BL6NJ_P0028236 Ccdc157 protein_coding protein_coding MGP_C57BL6NJ_T0028237.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1161796 1173206 - Ccdc157 protein_coding processed_transcript MGP_C57BL6NJ_T0028238.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1162990 1173206 - Ccdc157 protein_coding processed_transcript MGP_C57BL6NJ_T0028239.1 MGP_C57BL6NJ_G0018370.1 mouse_genomes_project 11 1164473 1173240 - Ccdc157 protein_coding processed_transcript MGP_C57BL6NJ_T0028274.1 MGP_C57BL6NJ_G0018380.1 mouse_genomes_project 11 1750393 1788639 + MGP_C57BL6NJ_P0028274 Zmat5 protein_coding protein_coding MGP_C57BL6NJ_T0028275.1 MGP_C57BL6NJ_G0018380.1 mouse_genomes_project 11 1750423 1788365 + Zmat5 protein_coding processed_transcript MGP_C57BL6NJ_T0028276.1 MGP_C57BL6NJ_G0018380.1 mouse_genomes_project 11 1777633 1783554 + Zmat5 protein_coding processed_transcript MGP_C57BL6NJ_T0030988.1 MGP_C57BL6NJ_G0019045.1 mouse_genomes_project 11 76103565 76105084 - MGP_C57BL6NJ_P0030988 Emc6 protein_coding protein_coding MGP_C57BL6NJ_T0030989.1 MGP_C57BL6NJ_G0019045.1 mouse_genomes_project 11 76104382 76105049 - MGP_C57BL6NJ_P0030989 Emc6 protein_coding protein_coding MGP_C57BL6NJ_T0029647.1 MGP_C57BL6NJ_G0018727.1 mouse_genomes_project 11 58321470 58329812 + MGP_C57BL6NJ_P0029647 Gria1 protein_coding protein_coding MGP_C57BL6NJ_T0029648.1 MGP_C57BL6NJ_G0018727.1 mouse_genomes_project 11 58321845 58673305 + MGP_C57BL6NJ_P0029648 Gria1 protein_coding protein_coding MGP_C57BL6NJ_T0029649.1 MGP_C57BL6NJ_G0018727.1 mouse_genomes_project 11 58321991 58673304 + MGP_C57BL6NJ_P0029649 Gria1 protein_coding protein_coding MGP_C57BL6NJ_T0029650.1 MGP_C57BL6NJ_G0018727.1 mouse_genomes_project 11 58327573 58673301 + MGP_C57BL6NJ_P0029650 Gria1 protein_coding protein_coding MGP_C57BL6NJ_T0029651.1 MGP_C57BL6NJ_G0018727.1 mouse_genomes_project 11 58517248 58530475 + Gria1 protein_coding processed_transcript MGP_C57BL6NJ_T0012925.1 MGP_C57BL6NJ_G0010970.1 mouse_genomes_project 11 59896489 59896708 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029664.1 MGP_C57BL6NJ_G0018732.1 mouse_genomes_project 11 59225641 59229759 - MGP_C57BL6NJ_P0029664 Hand1 protein_coding protein_coding MGP_C57BL6NJ_T0029665.1 MGP_C57BL6NJ_G0018732.1 mouse_genomes_project 11 59225643 59229084 - MGP_C57BL6NJ_P0029665 Hand1 protein_coding protein_coding MGP_C57BL6NJ_T0029666.1 MGP_C57BL6NJ_G0018732.1 mouse_genomes_project 11 59228630 59229759 - MGP_C57BL6NJ_P0029666 Hand1 protein_coding protein_coding MGP_C57BL6NJ_T0029487.1 MGP_C57BL6NJ_G0018688.1 mouse_genomes_project 11 54455242 54458944 - MGP_C57BL6NJ_P0029487 Sowaha protein_coding protein_coding MGP_C57BL6NJ_T0009884.1 MGP_C57BL6NJ_G0007969.1 mouse_genomes_project 11 67239309 67239408 - Gm25991 miRNA miRNA MGP_C57BL6NJ_T0003342.1 MGP_C57BL6NJ_G0003087.1 mouse_genomes_project 11 64534117 64534792 + Gm12949 antisense antisense MGP_C57BL6NJ_T0033950.1 MGP_C57BL6NJ_G0019791.1 mouse_genomes_project 11 123343338 123409889 - MGP_C57BL6NJ_P0033950 Grb2 protein_coding protein_coding MGP_C57BL6NJ_T0033951.1 MGP_C57BL6NJ_G0019791.1 mouse_genomes_project 11 123343338 123410116 - MGP_C57BL6NJ_P0033951 Grb2 protein_coding protein_coding MGP_C57BL6NJ_T0033952.1 MGP_C57BL6NJ_G0019791.1 mouse_genomes_project 11 123343338 123419180 - MGP_C57BL6NJ_P0033952 Grb2 protein_coding protein_coding MGP_C57BL6NJ_T0033953.1 MGP_C57BL6NJ_G0019791.1 mouse_genomes_project 11 123343943 123419159 - MGP_C57BL6NJ_P0033953 Grb2 protein_coding protein_coding MGP_C57BL6NJ_T0033954.1 MGP_C57BL6NJ_G0019791.1 mouse_genomes_project 11 123351162 123410510 - MGP_C57BL6NJ_P0033954 Grb2 protein_coding protein_coding MGP_C57BL6NJ_T0017691.1 MGP_C57BL6NJ_G0015584.1 mouse_genomes_project 11 87527394 87572687 + E230016K23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017692.1 MGP_C57BL6NJ_G0015584.1 mouse_genomes_project 11 87527422 87547376 + E230016K23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017693.1 MGP_C57BL6NJ_G0015584.1 mouse_genomes_project 11 87569954 87571196 + E230016K23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012834.1 MGP_C57BL6NJ_G0010879.1 mouse_genomes_project 11 25643002 25655664 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003324.1 MGP_C57BL6NJ_G0003072.1 mouse_genomes_project 11 58994695 59022644 - 4933424L21Rik antisense antisense MGP_C57BL6NJ_T0031242.1 MGP_C57BL6NJ_G0019122.1 mouse_genomes_project 11 79445106 79446162 + MGP_C57BL6NJ_P0031242 Dbil5 protein_coding protein_coding MGP_C57BL6NJ_T0031912.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90814573 90917848 - MGP_C57BL6NJ_P0031912 Vmp1 protein_coding protein_coding MGP_C57BL6NJ_T0031913.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90816409 90834453 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031914.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90816499 90818471 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031915.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90816748 90818358 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031916.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90816751 90834485 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031917.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90876187 90897790 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031918.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90898770 90917833 - Vmp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031919.1 MGP_C57BL6NJ_G0019284.1 mouse_genomes_project 11 90898870 90905392 - MGP_C57BL6NJ_P0031919 Vmp1 protein_coding protein_coding MGP_C57BL6NJ_T0012938.1 MGP_C57BL6NJ_G0010983.1 mouse_genomes_project 11 62661285 62661779 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032722.1 MGP_C57BL6NJ_G0019501.1 mouse_genomes_project 11 105468476 105468994 - MGP_C57BL6NJ_P0032722 Gm11555 protein_coding protein_coding MGP_C57BL6NJ_T0032723.1 MGP_C57BL6NJ_G0019501.1 mouse_genomes_project 11 105468537 105468939 - MGP_C57BL6NJ_P0032723 Gm11555 protein_coding protein_coding MGP_C57BL6NJ_T0032229.1 MGP_C57BL6NJ_G0019360.1 mouse_genomes_project 11 99843891 99858989 - MGP_C57BL6NJ_P0032229 Gm11541 protein_coding protein_coding MGP_C57BL6NJ_T0034373.1 MGP_C57BL6NJ_G0019872.1 mouse_genomes_project 11 127498402 127510981 - MGP_C57BL6NJ_P0034373 Sgsh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034374.1 MGP_C57BL6NJ_G0019872.1 mouse_genomes_project 11 127501219 127511009 - Sgsh protein_coding processed_transcript MGP_C57BL6NJ_T0034375.1 MGP_C57BL6NJ_G0019872.1 mouse_genomes_project 11 127501255 127510995 - MGP_C57BL6NJ_P0034375 Sgsh protein_coding protein_coding MGP_C57BL6NJ_T0034376.1 MGP_C57BL6NJ_G0019872.1 mouse_genomes_project 11 127501395 127502839 - Sgsh protein_coding processed_transcript MGP_C57BL6NJ_T0034377.1 MGP_C57BL6NJ_G0019872.1 mouse_genomes_project 11 127501776 127508180 - Sgsh protein_coding processed_transcript MGP_C57BL6NJ_T0006502.1 MGP_C57BL6NJ_G0005416.1 mouse_genomes_project 11 108905541 108911384 - 2810433D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0006503.1 MGP_C57BL6NJ_G0005416.1 mouse_genomes_project 11 108908285 108911334 - 2810433D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0012827.1 MGP_C57BL6NJ_G0010872.1 mouse_genomes_project 11 21167773 21168063 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017701.1 MGP_C57BL6NJ_G0015588.1 mouse_genomes_project 11 99826632 99836662 + Gm11542 processed_transcript processed_transcript MGP_C57BL6NJ_T0099762.1 MGP_C57BL6NJ_G0037808.1 mouse_genomes_project 11 71590588 71590689 + Gm25371 snRNA snRNA MGP_C57BL6NJ_T0034467.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128601753 128611433 - Faap100 protein_coding retained_intron MGP_C57BL6NJ_T0034468.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128602260 128611462 - MGP_C57BL6NJ_P0034468 Faap100 protein_coding protein_coding MGP_C57BL6NJ_T0034469.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128602579 128603587 - Faap100 protein_coding retained_intron MGP_C57BL6NJ_T0034470.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128605669 128606866 - Faap100 protein_coding processed_transcript MGP_C57BL6NJ_T0034471.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128605724 128611434 - Faap100 protein_coding retained_intron MGP_C57BL6NJ_T0034472.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128608867 128611407 - Faap100 protein_coding processed_transcript MGP_C57BL6NJ_T0034473.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128609683 128611172 - Faap100 protein_coding processed_transcript MGP_C57BL6NJ_T0034474.1 MGP_C57BL6NJ_G0019888.1 mouse_genomes_project 11 128610020 128611433 - Faap100 protein_coding processed_transcript MGP_C57BL6NJ_T0031944.1 MGP_C57BL6NJ_G0019294.1 mouse_genomes_project 11 91482274 91634110 - MGP_C57BL6NJ_P0031944 Ppm1e protein_coding protein_coding MGP_C57BL6NJ_T0031945.1 MGP_C57BL6NJ_G0019294.1 mouse_genomes_project 11 91500055 91633724 - Ppm1e protein_coding processed_transcript MGP_C57BL6NJ_T0033017.1 MGP_C57BL6NJ_G0019596.1 mouse_genomes_project 11 107607679 107614464 + Rnd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033018.1 MGP_C57BL6NJ_G0019596.1 mouse_genomes_project 11 107608164 107613716 + Rnd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033019.1 MGP_C57BL6NJ_G0019596.1 mouse_genomes_project 11 107610855 107614464 + MGP_C57BL6NJ_P0033019 Rnd2 protein_coding protein_coding MGP_C57BL6NJ_T0013095.1 MGP_C57BL6NJ_G0011140.1 mouse_genomes_project 11 129516786 129517241 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032530.1 MGP_C57BL6NJ_G0019440.1 mouse_genomes_project 11 103569608 103580050 - MGP_C57BL6NJ_P0032530 Arl5c protein_coding protein_coding MGP_C57BL6NJ_T0012813.1 MGP_C57BL6NJ_G0010858.1 mouse_genomes_project 11 19255816 19256023 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030311.1 MGP_C57BL6NJ_G0018902.1 mouse_genomes_project 11 71470581 71474912 + MGP_C57BL6NJ_P0030311 Slc25a35 protein_coding protein_coding MGP_C57BL6NJ_T0030312.1 MGP_C57BL6NJ_G0018902.1 mouse_genomes_project 11 71470597 71474178 + Slc25a35 protein_coding processed_transcript MGP_C57BL6NJ_T0030313.1 MGP_C57BL6NJ_G0018902.1 mouse_genomes_project 11 71470598 71476898 + MGP_C57BL6NJ_P0030313 Slc25a35 protein_coding protein_coding MGP_C57BL6NJ_T0030504.1 MGP_C57BL6NJ_G0018943.1 mouse_genomes_project 11 72354490 72356569 - MGP_C57BL6NJ_P0030504 Slc35g3 protein_coding protein_coding MGP_C57BL6NJ_T0028320.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2161484 2192938 - MGP_C57BL6NJ_P0028320 Ewsr1 protein_coding protein_coding MGP_C57BL6NJ_T0028321.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2161493 2192739 - MGP_C57BL6NJ_P0028321 Ewsr1 protein_coding protein_coding MGP_C57BL6NJ_T0028322.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2161692 2192714 - MGP_C57BL6NJ_P0028322 Ewsr1 protein_coding protein_coding MGP_C57BL6NJ_T0028323.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2161769 2162687 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028324.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2165181 2172997 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028325.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2165491 2171921 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028326.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2165594 2175809 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028327.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2165594 2173368 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028328.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2173886 2192738 - MGP_C57BL6NJ_P0028328 Ewsr1 protein_coding protein_coding MGP_C57BL6NJ_T0028329.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2175490 2179613 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0028330.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2184035 2192768 - MGP_C57BL6NJ_P0028330 Ewsr1 protein_coding protein_coding MGP_C57BL6NJ_T0028331.1 MGP_C57BL6NJ_G0018389.1 mouse_genomes_project 11 2187108 2192739 - Ewsr1 protein_coding processed_transcript MGP_C57BL6NJ_T0030801.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73393282 73406402 - MGP_C57BL6NJ_P0030801 Inca1 protein_coding protein_coding MGP_C57BL6NJ_T0030802.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73393282 73406402 - MGP_C57BL6NJ_P0030802 Inca1 protein_coding protein_coding MGP_C57BL6NJ_T0030803.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73393282 73406402 - MGP_C57BL6NJ_P0030803 Inca1 protein_coding protein_coding MGP_C57BL6NJ_T0030804.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73393282 73406402 - MGP_C57BL6NJ_P0030804 Inca1 protein_coding protein_coding MGP_C57BL6NJ_T0030805.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73393290 73406356 - MGP_C57BL6NJ_P0030805 Inca1 protein_coding protein_coding MGP_C57BL6NJ_T0030806.1 MGP_C57BL6NJ_G0019004.1 mouse_genomes_project 11 73394036 73402218 - MGP_C57BL6NJ_P0030806 Inca1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099733.1 MGP_C57BL6NJ_G0037779.1 mouse_genomes_project 11 5227725 5227787 - Gm27393 snRNA snRNA MGP_C57BL6NJ_T0099800.1 MGP_C57BL6NJ_G0037846.1 mouse_genomes_project 11 108825842 108825946 - Gm25337 snRNA snRNA MGP_C57BL6NJ_T0031539.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906040 82911542 + Nf1 protein_coding processed_transcript MGP_C57BL6NJ_T0031540.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906139 83166061 + MGP_C57BL6NJ_P0031540 Nf1 protein_coding protein_coding MGP_C57BL6NJ_T0031541.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906172 83171309 + MGP_C57BL6NJ_P0031541 Nf1 protein_coding protein_coding MGP_C57BL6NJ_T0031542.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906234 83013785 + Nf1 protein_coding retained_intron MGP_C57BL6NJ_T0031543.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906347 83061903 + MGP_C57BL6NJ_P0031543 Nf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031544.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 82906347 83062753 + MGP_C57BL6NJ_P0031544 Nf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031545.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 83032315 83059307 + Nf1 protein_coding processed_transcript MGP_C57BL6NJ_T0031546.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 83032315 83059307 + Nf1 protein_coding processed_transcript MGP_C57BL6NJ_T0031556.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 83122709 83157240 + Nf1 protein_coding retained_intron MGP_C57BL6NJ_T0031557.1 MGP_C57BL6NJ_G0019188.1 mouse_genomes_project 11 83132199 83167167 + MGP_C57BL6NJ_P0031557 Nf1 protein_coding protein_coding MGP_C57BL6NJ_T0034627.1 MGP_C57BL6NJ_G0019919.1 mouse_genomes_project 11 129065548 129068855 - Rfng protein_coding processed_transcript MGP_C57BL6NJ_T0034628.1 MGP_C57BL6NJ_G0019919.1 mouse_genomes_project 11 129065550 129068877 - MGP_C57BL6NJ_P0034628 Rfng protein_coding protein_coding MGP_C57BL6NJ_T0013053.1 MGP_C57BL6NJ_G0011098.1 mouse_genomes_project 11 110969846 110970258 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033735.1 MGP_C57BL6NJ_G0019745.1 mouse_genomes_project 11 121039478 121049750 + MGP_C57BL6NJ_P0033735 D11Wsu47e protein_coding protein_coding MGP_C57BL6NJ_T0033736.1 MGP_C57BL6NJ_G0019745.1 mouse_genomes_project 11 121039506 121043280 + MGP_C57BL6NJ_P0033736 D11Wsu47e protein_coding protein_coding MGP_C57BL6NJ_T0033737.1 MGP_C57BL6NJ_G0019745.1 mouse_genomes_project 11 121039513 121049750 + MGP_C57BL6NJ_P0033737 D11Wsu47e protein_coding protein_coding MGP_C57BL6NJ_T0033738.1 MGP_C57BL6NJ_G0019745.1 mouse_genomes_project 11 121040152 121043195 + MGP_C57BL6NJ_P0033738 D11Wsu47e protein_coding protein_coding MGP_C57BL6NJ_T0000982.1 MGP_C57BL6NJ_G0000892.1 mouse_genomes_project 11 112562924 112564474 + TEC TEC MGP_C57BL6NJ_T0013002.1 MGP_C57BL6NJ_G0011047.1 mouse_genomes_project 11 87759476 87760101 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099785.1 MGP_C57BL6NJ_G0037831.1 mouse_genomes_project 11 92028426 92028526 - Gm25968 snRNA snRNA MGP_C57BL6NJ_T0029074.1 MGP_C57BL6NJ_G0018571.1 mouse_genomes_project 11 43661180 43666647 - MGP_C57BL6NJ_P0029074 Fabp6 protein_coding protein_coding MGP_C57BL6NJ_T0030422.1 MGP_C57BL6NJ_G0018925.1 mouse_genomes_project 11 71941014 71955656 - MGP_C57BL6NJ_P0030422 Kdm6b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030423.1 MGP_C57BL6NJ_G0018925.1 mouse_genomes_project 11 71941018 71957862 - MGP_C57BL6NJ_P0030423 Kdm6b protein_coding protein_coding MGP_C57BL6NJ_T0030424.1 MGP_C57BL6NJ_G0018925.1 mouse_genomes_project 11 71945772 71946710 - Kdm6b protein_coding processed_transcript MGP_C57BL6NJ_T0099321.1 MGP_C57BL6NJ_G0037384.1 mouse_genomes_project 11 56683541 56683665 + Gm12238 sense_intronic sense_intronic MGP_C57BL6NJ_T0029318.1 MGP_C57BL6NJ_G0018639.1 mouse_genomes_project 11 51036491 51079369 - MGP_C57BL6NJ_P0029318 Rufy1 protein_coding protein_coding MGP_C57BL6NJ_T0029319.1 MGP_C57BL6NJ_G0018639.1 mouse_genomes_project 11 51036578 51061739 - Rufy1 protein_coding processed_transcript MGP_C57BL6NJ_T0029320.1 MGP_C57BL6NJ_G0018639.1 mouse_genomes_project 11 51055094 51070235 - Rufy1 protein_coding processed_transcript MGP_C57BL6NJ_T0099743.1 MGP_C57BL6NJ_G0037789.1 mouse_genomes_project 11 23256186 23256259 - Gm22787 snRNA snRNA MGP_C57BL6NJ_T0034396.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127792235 128014524 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034397.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127792325 127972792 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034398.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127792345 128036388 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034399.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127792479 128092438 + MGP_C57BL6NJ_P0034399 Rptor protein_coding protein_coding MGP_C57BL6NJ_T0034400.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127793028 128092607 + MGP_C57BL6NJ_P0034400 Rptor protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034401.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127846221 128059192 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034402.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 127989285 128038299 + MGP_C57BL6NJ_P0034402 Rptor protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034403.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 128001758 128060581 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034404.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 128014294 128048975 + MGP_C57BL6NJ_P0034404 Rptor protein_coding protein_coding MGP_C57BL6NJ_T0034405.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 128048935 128089173 + MGP_C57BL6NJ_P0034405 Rptor protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034406.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 128048985 128050479 + Rptor protein_coding retained_intron MGP_C57BL6NJ_T0034407.1 MGP_C57BL6NJ_G0019877.1 mouse_genomes_project 11 128050120 128078088 + MGP_C57BL6NJ_P0034407 Rptor protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030471.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72246700 72252177 - Eif4a1 protein_coding retained_intron MGP_C57BL6NJ_T0030472.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72246700 72252177 - MGP_C57BL6NJ_P0030472 Eif4a1 protein_coding protein_coding MGP_C57BL6NJ_T0030473.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72246701 72252177 - Eif4a1 protein_coding retained_intron MGP_C57BL6NJ_T0030474.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72246989 72248097 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030475.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72247148 72247923 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030476.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72247219 72248149 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030477.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72248341 72252283 - MGP_C57BL6NJ_P0030477 Eif4a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030478.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72249014 72252176 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030479.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72249022 72250743 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030480.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72249992 72252175 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030481.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72250039 72251590 - Eif4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0030482.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72250107 72251082 - Eif4a1 protein_coding retained_intron MGP_C57BL6NJ_T0030483.1 MGP_C57BL6NJ_G0018937.1 mouse_genomes_project 11 72250328 72251310 - Eif4a1 protein_coding retained_intron MGP_C57BL6NJ_T0029134.1 MGP_C57BL6NJ_G0018588.1 mouse_genomes_project 11 46659360 46669419 + Fam71b protein_coding processed_transcript MGP_C57BL6NJ_T0029135.1 MGP_C57BL6NJ_G0018588.1 mouse_genomes_project 11 46667533 46670786 + MGP_C57BL6NJ_P0029135 Fam71b protein_coding protein_coding MGP_C57BL6NJ_T0028256.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1371117 1472808 - MGP_C57BL6NJ_P0028256 Hormad2 protein_coding protein_coding MGP_C57BL6NJ_T0028257.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1371117 1473166 - MGP_C57BL6NJ_P0028257 Hormad2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028258.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1371686 1473145 - MGP_C57BL6NJ_P0028258 Hormad2 protein_coding protein_coding MGP_C57BL6NJ_T0028259.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1454215 1457410 - Hormad2 protein_coding processed_transcript MGP_C57BL6NJ_T0028260.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1454395 1473168 - MGP_C57BL6NJ_P0028260 Hormad2 protein_coding protein_coding MGP_C57BL6NJ_T0028261.1 MGP_C57BL6NJ_G0018376.1 mouse_genomes_project 11 1457461 1465816 - Hormad2 protein_coding processed_transcript MGP_C57BL6NJ_T0009854.1 MGP_C57BL6NJ_G0007939.1 mouse_genomes_project 11 27715162 27715248 + Mir216b miRNA miRNA MGP_C57BL6NJ_T0032937.1 MGP_C57BL6NJ_G0019577.1 mouse_genomes_project 11 107221750 107224197 - MGP_C57BL6NJ_P0032937 Ccr10 protein_coding protein_coding MGP_C57BL6NJ_T0009948.1 MGP_C57BL6NJ_G0008033.1 mouse_genomes_project 11 108668737 108668805 - Mir6930 miRNA miRNA MGP_C57BL6NJ_T0099779.1 MGP_C57BL6NJ_G0037825.1 mouse_genomes_project 11 89649160 89649307 + Gm23765 snRNA snRNA MGP_C57BL6NJ_T0012905.1 MGP_C57BL6NJ_G0010950.1 mouse_genomes_project 11 54314117 54314505 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003375.1 MGP_C57BL6NJ_G0003113.1 mouse_genomes_project 11 78089963 78090685 - Gm28180 antisense antisense MGP_C57BL6NJ_T0033411.1 MGP_C57BL6NJ_G0019672.1 mouse_genomes_project 11 111624393 111656015 + MGP_C57BL6NJ_P0033411 Efcab3 protein_coding protein_coding MGP_C57BL6NJ_T0033412.1 MGP_C57BL6NJ_G0019672.1 mouse_genomes_project 11 111627542 111673364 + MGP_C57BL6NJ_P0033412 Efcab3 protein_coding protein_coding MGP_C57BL6NJ_T0033413.1 MGP_C57BL6NJ_G0019672.1 mouse_genomes_project 11 111659144 111684594 + MGP_C57BL6NJ_P0033413 Efcab3 protein_coding protein_coding MGP_C57BL6NJ_T0033414.1 MGP_C57BL6NJ_G0019672.1 mouse_genomes_project 11 111679931 111684592 + Efcab3 protein_coding processed_transcript MGP_C57BL6NJ_T0030269.1 MGP_C57BL6NJ_G0018893.1 mouse_genomes_project 11 70951209 71003688 + MGP_C57BL6NJ_P0030269 Pik3r6 protein_coding protein_coding MGP_C57BL6NJ_T0030270.1 MGP_C57BL6NJ_G0018893.1 mouse_genomes_project 11 70951209 71003688 + MGP_C57BL6NJ_P0030270 Pik3r6 protein_coding protein_coding MGP_C57BL6NJ_T0030271.1 MGP_C57BL6NJ_G0018893.1 mouse_genomes_project 11 70951281 71003688 + Pik3r6 protein_coding processed_transcript MGP_C57BL6NJ_T0030272.1 MGP_C57BL6NJ_G0018893.1 mouse_genomes_project 11 70986041 70995377 + Pik3r6 protein_coding processed_transcript MGP_C57BL6NJ_T0030273.1 MGP_C57BL6NJ_G0018893.1 mouse_genomes_project 11 71003053 71003686 + Pik3r6 protein_coding processed_transcript MGP_C57BL6NJ_T0029236.1 MGP_C57BL6NJ_G0018619.1 mouse_genomes_project 11 49988197 49989133 + MGP_C57BL6NJ_P0029236 Olfr1388 protein_coding protein_coding MGP_C57BL6NJ_T0012821.1 MGP_C57BL6NJ_G0010866.1 mouse_genomes_project 11 19979347 19980064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028668.1 MGP_C57BL6NJ_G0018473.1 mouse_genomes_project 11 21396115 21422451 - MGP_C57BL6NJ_P0028668 B3gnt2 protein_coding protein_coding MGP_C57BL6NJ_T0028669.1 MGP_C57BL6NJ_G0018473.1 mouse_genomes_project 11 21396233 21422838 - MGP_C57BL6NJ_P0028669 B3gnt2 protein_coding protein_coding MGP_C57BL6NJ_T0028670.1 MGP_C57BL6NJ_G0018473.1 mouse_genomes_project 11 21397951 21423302 - MGP_C57BL6NJ_P0028670 B3gnt2 protein_coding protein_coding MGP_C57BL6NJ_T0031453.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81757180 81760085 + MGP_C57BL6NJ_P0031453 BC030499 protein_coding protein_coding MGP_C57BL6NJ_T0031454.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81757231 81761682 + BC030499 protein_coding retained_intron MGP_C57BL6NJ_T0031455.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81757233 81760158 + BC030499 protein_coding retained_intron MGP_C57BL6NJ_T0031456.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81757268 81760173 + BC030499 protein_coding retained_intron MGP_C57BL6NJ_T0031457.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81757895 81758503 + BC030499 protein_coding retained_intron MGP_C57BL6NJ_T0031458.1 MGP_C57BL6NJ_G0019164.1 mouse_genomes_project 11 81760146 81763145 + BC030499 protein_coding retained_intron MGP_C57BL6NJ_T0102767.1 MGP_C57BL6NJ_G0040562.1 mouse_genomes_project 11 105835154 105835571 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006361.1 MGP_C57BL6NJ_G0005310.1 mouse_genomes_project 11 23969078 24112910 + 4933427E13Rik lincRNA lincRNA MGP_C57BL6NJ_T0006363.1 MGP_C57BL6NJ_G0005310.1 mouse_genomes_project 11 24071018 24112914 + 4933427E13Rik lincRNA lincRNA MGP_C57BL6NJ_T0006364.1 MGP_C57BL6NJ_G0005310.1 mouse_genomes_project 11 24071047 24075630 + 4933427E13Rik lincRNA lincRNA MGP_C57BL6NJ_T0006365.1 MGP_C57BL6NJ_G0005310.1 mouse_genomes_project 11 24074868 24103964 + 4933427E13Rik lincRNA lincRNA MGP_C57BL6NJ_T0034525.1 MGP_C57BL6NJ_G0019899.1 mouse_genomes_project 11 128792875 128802613 - Fam195b protein_coding processed_transcript MGP_C57BL6NJ_T0034526.1 MGP_C57BL6NJ_G0019899.1 mouse_genomes_project 11 128792875 128802639 - MGP_C57BL6NJ_P0034526 Fam195b protein_coding protein_coding MGP_C57BL6NJ_T0012864.1 MGP_C57BL6NJ_G0010909.1 mouse_genomes_project 11 32712255 32712643 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017749.1 MGP_C57BL6NJ_G0015612.1 mouse_genomes_project 11 121592694 121593636 + 1700092K14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011568.1 MGP_C57BL6NJ_G0009653.1 mouse_genomes_project 11 90547421 90547524 + Gm25427 misc_RNA misc_RNA MGP_C57BL6NJ_T0000979.1 MGP_C57BL6NJ_G0000889.1 mouse_genomes_project 11 45450383 45474215 - TEC TEC MGP_C57BL6NJ_T0101011.1 MGP_C57BL6NJ_G0039057.1 mouse_genomes_project 11 3781329 3781418 - Gm24000 snoRNA snoRNA MGP_C57BL6NJ_T0003446.1 MGP_C57BL6NJ_G0003167.1 mouse_genomes_project 11 107356729 107359055 - antisense antisense MGP_C57BL6NJ_T0012926.1 MGP_C57BL6NJ_G0010971.1 mouse_genomes_project 11 60049912 60050196 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031859.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89497208 89666927 + MGP_C57BL6NJ_P0031859 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031860.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89497209 90009220 + MGP_C57BL6NJ_P0031860 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031861.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89497226 89526093 + MGP_C57BL6NJ_P0031861 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031862.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89497253 90008511 + MGP_C57BL6NJ_P0031862 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031863.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89497253 90008511 + MGP_C57BL6NJ_P0031863 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031864.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89620136 90009219 + MGP_C57BL6NJ_P0031864 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031865.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89624729 89652395 + MGP_C57BL6NJ_P0031865 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031866.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89647969 89651316 + Bcas3 protein_coding processed_transcript MGP_C57BL6NJ_T0031867.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89665562 90009219 + MGP_C57BL6NJ_P0031867 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031868.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89665573 90009219 + MGP_C57BL6NJ_P0031868 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031869.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89748522 89772540 + Bcas3 protein_coding processed_transcript MGP_C57BL6NJ_T0031870.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89811579 90009216 + Bcas3 protein_coding processed_transcript MGP_C57BL6NJ_T0031871.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 89978825 90008551 + MGP_C57BL6NJ_P0031871 Bcas3 protein_coding protein_coding MGP_C57BL6NJ_T0031872.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 90004573 90008807 + Bcas3 protein_coding processed_transcript MGP_C57BL6NJ_T0031873.1 MGP_C57BL6NJ_G0019274.1 mouse_genomes_project 11 90005126 90008468 + Bcas3 protein_coding processed_transcript MGP_C57BL6NJ_T0012752.1 MGP_C57BL6NJ_G0010797.1 mouse_genomes_project 11 849933 853151 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006347.1 MGP_C57BL6NJ_G0005297.1 mouse_genomes_project 11 21020877 21031632 + Gm12051 lincRNA lincRNA MGP_C57BL6NJ_T0031033.1 MGP_C57BL6NJ_G0019064.1 mouse_genomes_project 11 76783478 76788388 + MGP_C57BL6NJ_P0031033 Olfr390 protein_coding protein_coding MGP_C57BL6NJ_T0031034.1 MGP_C57BL6NJ_G0019064.1 mouse_genomes_project 11 76783496 76787919 + MGP_C57BL6NJ_P0031034 Olfr390 protein_coding protein_coding MGP_C57BL6NJ_T0031035.1 MGP_C57BL6NJ_G0019064.1 mouse_genomes_project 11 76787452 76788388 + MGP_C57BL6NJ_P0031035 Olfr390 protein_coding protein_coding MGP_C57BL6NJ_T0032861.1 MGP_C57BL6NJ_G0019559.1 mouse_genomes_project 11 106720199 106741124 - MGP_C57BL6NJ_P0032861 Kcnh4 protein_coding protein_coding MGP_C57BL6NJ_T0032862.1 MGP_C57BL6NJ_G0019559.1 mouse_genomes_project 11 106720205 106741326 - MGP_C57BL6NJ_P0032862 Kcnh4 protein_coding protein_coding MGP_C57BL6NJ_T0030568.1 MGP_C57BL6NJ_G0018959.1 mouse_genomes_project 11 72526431 72529120 + MGP_C57BL6NJ_P0030568 Gps2 protein_coding protein_coding MGP_C57BL6NJ_T0030569.1 MGP_C57BL6NJ_G0018959.1 mouse_genomes_project 11 72526593 72529134 + MGP_C57BL6NJ_P0030569 Gps2 protein_coding protein_coding MGP_C57BL6NJ_T0030570.1 MGP_C57BL6NJ_G0018959.1 mouse_genomes_project 11 72526735 72529135 + MGP_C57BL6NJ_P0030570 Gps2 protein_coding protein_coding MGP_C57BL6NJ_T0030571.1 MGP_C57BL6NJ_G0018959.1 mouse_genomes_project 11 72527388 72528424 + Gps2 protein_coding processed_transcript MGP_C57BL6NJ_T0030572.1 MGP_C57BL6NJ_G0018959.1 mouse_genomes_project 11 72528584 72529100 + MGP_C57BL6NJ_P0030572 Gps2 protein_coding protein_coding MGP_C57BL6NJ_T0028559.1 MGP_C57BL6NJ_G0018443.1 mouse_genomes_project 11 14184295 14213007 + MGP_C57BL6NJ_P0028559 Vstm2a protein_coding protein_coding MGP_C57BL6NJ_T0028560.1 MGP_C57BL6NJ_G0018443.1 mouse_genomes_project 11 14184374 14376060 + MGP_C57BL6NJ_P0028560 Vstm2a protein_coding protein_coding MGP_C57BL6NJ_T0028561.1 MGP_C57BL6NJ_G0018443.1 mouse_genomes_project 11 14184612 14210908 + MGP_C57BL6NJ_P0028561 Vstm2a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006421.1 MGP_C57BL6NJ_G0005361.1 mouse_genomes_project 11 67459786 67471795 - Gm12295 lincRNA lincRNA MGP_C57BL6NJ_T0006422.1 MGP_C57BL6NJ_G0005361.1 mouse_genomes_project 11 67469897 67565115 - Gm12295 lincRNA lincRNA MGP_C57BL6NJ_T0033278.1 MGP_C57BL6NJ_G0019639.1 mouse_genomes_project 11 109194169 109195732 + MGP_C57BL6NJ_P0033278 Fam187a protein_coding protein_coding MGP_C57BL6NJ_T0030518.1 MGP_C57BL6NJ_G0018947.1 mouse_genomes_project 11 72405638 72407660 - MGP_C57BL6NJ_P0030518 Tmem102 protein_coding protein_coding MGP_C57BL6NJ_T0034382.1 MGP_C57BL6NJ_G0019874.1 mouse_genomes_project 11 127549595 127656363 + MGP_C57BL6NJ_P0034382 Rnf213 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034383.1 MGP_C57BL6NJ_G0019874.1 mouse_genomes_project 11 127551945 127657620 + MGP_C57BL6NJ_P0034383 Rnf213 protein_coding protein_coding MGP_C57BL6NJ_T0034384.1 MGP_C57BL6NJ_G0019874.1 mouse_genomes_project 11 127551945 127657623 + MGP_C57BL6NJ_P0034384 Rnf213 protein_coding protein_coding MGP_C57BL6NJ_T0034385.1 MGP_C57BL6NJ_G0019874.1 mouse_genomes_project 11 127648261 127657622 + MGP_C57BL6NJ_P0034385 Rnf213 protein_coding protein_coding MGP_C57BL6NJ_T0003496.1 MGP_C57BL6NJ_G0003211.1 mouse_genomes_project 11 124603402 124610609 + BC018473 antisense antisense MGP_C57BL6NJ_T0003497.1 MGP_C57BL6NJ_G0003211.1 mouse_genomes_project 11 124603404 124607078 + BC018473 antisense antisense MGP_C57BL6NJ_T0003498.1 MGP_C57BL6NJ_G0003211.1 mouse_genomes_project 11 124603584 124607078 + BC018473 antisense antisense MGP_C57BL6NJ_T0003499.1 MGP_C57BL6NJ_G0003211.1 mouse_genomes_project 11 124604198 124607078 + BC018473 antisense antisense MGP_C57BL6NJ_T0013093.1 MGP_C57BL6NJ_G0011138.1 mouse_genomes_project 11 129449024 129449840 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028390.1 MGP_C57BL6NJ_G0018405.1 mouse_genomes_project 11 3070971 3085243 - MGP_C57BL6NJ_P0028390 Gck protein_coding protein_coding MGP_C57BL6NJ_T0028391.1 MGP_C57BL6NJ_G0018405.1 mouse_genomes_project 11 3070971 3085243 - MGP_C57BL6NJ_P0028391 Gck protein_coding protein_coding MGP_C57BL6NJ_T0028392.1 MGP_C57BL6NJ_G0018405.1 mouse_genomes_project 11 3070974 3123012 - MGP_C57BL6NJ_P0028392 Gck protein_coding protein_coding MGP_C57BL6NJ_T0028393.1 MGP_C57BL6NJ_G0018405.1 mouse_genomes_project 11 3071720 3072239 - MGP_C57BL6NJ_P0028393 Gck protein_coding protein_coding MGP_C57BL6NJ_T0012800.1 MGP_C57BL6NJ_G0010845.1 mouse_genomes_project 11 16640437 16642331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029719.1 MGP_C57BL6NJ_G0018752.1 mouse_genomes_project 11 60094517 60096244 - MGP_C57BL6NJ_P0029719 Olfr224 protein_coding protein_coding MGP_C57BL6NJ_T0009944.1 MGP_C57BL6NJ_G0008029.1 mouse_genomes_project 11 107182306 107182362 - Gm27626 miRNA miRNA MGP_C57BL6NJ_T0029479.1 MGP_C57BL6NJ_G0018685.1 mouse_genomes_project 11 54433548 54435855 - MGP_C57BL6NJ_P0029479 Gm10447 protein_coding protein_coding MGP_C57BL6NJ_T0006542.1 MGP_C57BL6NJ_G0005447.1 mouse_genomes_project 11 127273732 127279078 + Gm26888 lincRNA lincRNA MGP_C57BL6NJ_T0029123.1 MGP_C57BL6NJ_G0018584.1 mouse_genomes_project 11 46390998 46410399 - MGP_C57BL6NJ_P0029123 Nipal4 protein_coding protein_coding MGP_C57BL6NJ_T0017622.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14929811 14947947 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017623.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14929816 14947966 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017624.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14929979 14947890 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017625.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14930243 14947948 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017626.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14930286 14948130 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017627.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14930359 14947930 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0017628.1 MGP_C57BL6NJ_G0015547.1 mouse_genomes_project 11 14933832 14947941 - Eldr processed_transcript processed_transcript MGP_C57BL6NJ_T0009898.1 MGP_C57BL6NJ_G0007983.1 mouse_genomes_project 11 73110585 73110649 + Mir7115 miRNA miRNA MGP_C57BL6NJ_T0099243.1 MGP_C57BL6NJ_G0037307.1 mouse_genomes_project 11 71891293 71891437 - Gm22442 scaRNA scaRNA MGP_C57BL6NJ_T0034019.1 MGP_C57BL6NJ_G0019802.1 mouse_genomes_project 11 123750031 123754655 - MGP_C57BL6NJ_P0034019 Galk1 protein_coding protein_coding MGP_C57BL6NJ_T0031933.1 MGP_C57BL6NJ_G0019289.1 mouse_genomes_project 11 91281784 91324177 - MGP_C57BL6NJ_P0031933 Gdpd1 protein_coding protein_coding MGP_C57BL6NJ_T0029395.1 MGP_C57BL6NJ_G0018660.1 mouse_genomes_project 11 52411647 52417045 + MGP_C57BL6NJ_P0029395 Nhp2 protein_coding protein_coding MGP_C57BL6NJ_T0029396.1 MGP_C57BL6NJ_G0018660.1 mouse_genomes_project 11 52411683 52416760 + Nhp2 protein_coding retained_intron MGP_C57BL6NJ_T0032099.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95393383 95436791 - MGP_C57BL6NJ_P0032099 Tom1l1 protein_coding protein_coding MGP_C57BL6NJ_T0032100.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95393383 95436769 - MGP_C57BL6NJ_P0032100 Tom1l1 protein_coding protein_coding MGP_C57BL6NJ_T0032101.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95393921 95397622 - Tom1l1 protein_coding retained_intron MGP_C57BL6NJ_T0032102.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95394528 95436760 - MGP_C57BL6NJ_P0032102 Tom1l1 protein_coding protein_coding MGP_C57BL6NJ_T0032103.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95404774 95411015 - Tom1l1 protein_coding retained_intron MGP_C57BL6NJ_T0032104.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95419291 95436778 - MGP_C57BL6NJ_P0032104 Tom1l1 protein_coding protein_coding MGP_C57BL6NJ_T0032105.1 MGP_C57BL6NJ_G0019334.1 mouse_genomes_project 11 95432479 95437556 - Tom1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0031564.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83609730 83656437 + MGP_C57BL6NJ_P0031564 Suz12 protein_coding protein_coding MGP_C57BL6NJ_T0031565.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83609730 83656438 + MGP_C57BL6NJ_P0031565 Suz12 protein_coding protein_coding MGP_C57BL6NJ_T0031566.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83612210 83620623 + Suz12 protein_coding retained_intron MGP_C57BL6NJ_T0031567.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83612241 83634908 + Suz12 protein_coding retained_intron MGP_C57BL6NJ_T0031568.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83612415 83634838 + MGP_C57BL6NJ_P0031568 Suz12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031569.1 MGP_C57BL6NJ_G0019195.1 mouse_genomes_project 11 83646128 83654316 + MGP_C57BL6NJ_P0031569 Suz12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030923.1 MGP_C57BL6NJ_G0019029.1 mouse_genomes_project 11 75224002 75245963 - MGP_C57BL6NJ_P0030923 Smtnl2 protein_coding protein_coding MGP_C57BL6NJ_T0030924.1 MGP_C57BL6NJ_G0019029.1 mouse_genomes_project 11 75232588 75235823 - Smtnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0030925.1 MGP_C57BL6NJ_G0019029.1 mouse_genomes_project 11 75234200 75235456 - Smtnl2 protein_coding processed_transcript MGP_C57BL6NJ_T0030028.1 MGP_C57BL6NJ_G0018835.1 mouse_genomes_project 11 63582530 63606779 + MGP_C57BL6NJ_P0030028 Grap protein_coding protein_coding MGP_C57BL6NJ_T0030029.1 MGP_C57BL6NJ_G0018835.1 mouse_genomes_project 11 63600610 63601445 + Grap protein_coding processed_transcript MGP_C57BL6NJ_T0034713.1 MGP_C57BL6NJ_G0019938.1 mouse_genomes_project 11 129721809 129756370 - MGP_C57BL6NJ_P0034713 Rab40b protein_coding protein_coding MGP_C57BL6NJ_T0034714.1 MGP_C57BL6NJ_G0019938.1 mouse_genomes_project 11 129723686 129756184 - Rab40b protein_coding processed_transcript MGP_C57BL6NJ_T0034715.1 MGP_C57BL6NJ_G0019938.1 mouse_genomes_project 11 129725275 129756340 - Rab40b protein_coding processed_transcript MGP_C57BL6NJ_T0034716.1 MGP_C57BL6NJ_G0019938.1 mouse_genomes_project 11 129725294 129756349 - Rab40b protein_coding processed_transcript MGP_C57BL6NJ_T0017695.1 MGP_C57BL6NJ_G0015586.1 mouse_genomes_project 11 89968666 90015251 - 2610027K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017696.1 MGP_C57BL6NJ_G0015586.1 mouse_genomes_project 11 89972793 90015265 - 2610027K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017697.1 MGP_C57BL6NJ_G0015586.1 mouse_genomes_project 11 89972879 89981156 - 2610027K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0009889.1 MGP_C57BL6NJ_G0007974.1 mouse_genomes_project 11 72066649 72066727 - Gm27493 miRNA miRNA MGP_C57BL6NJ_T0012796.1 MGP_C57BL6NJ_G0010841.1 mouse_genomes_project 11 15334614 15335457 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012839.1 MGP_C57BL6NJ_G0010884.1 mouse_genomes_project 11 26380855 26381331 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028735.1 MGP_C57BL6NJ_G0018485.1 mouse_genomes_project 11 22367385 22402415 - MGP_C57BL6NJ_P0028735 Rel protein_coding protein_coding MGP_C57BL6NJ_T0006338.1 MGP_C57BL6NJ_G0005289.1 mouse_genomes_project 11 16733374 16857140 - Gm12023 lincRNA lincRNA MGP_C57BL6NJ_T0017678.1 MGP_C57BL6NJ_G0015577.1 mouse_genomes_project 11 78279014 78285537 + 1700016P03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0099797.1 MGP_C57BL6NJ_G0037843.1 mouse_genomes_project 11 107766150 107766341 + Gm26316 snRNA snRNA MGP_C57BL6NJ_T0028927.1 MGP_C57BL6NJ_G0018527.1 mouse_genomes_project 11 31515331 31517941 + MGP_C57BL6NJ_P0028927 protein_coding protein_coding MGP_C57BL6NJ_T0028928.1 MGP_C57BL6NJ_G0018527.1 mouse_genomes_project 11 31515367 31517942 + protein_coding retained_intron MGP_C57BL6NJ_T0032410.1 MGP_C57BL6NJ_G0019410.1 mouse_genomes_project 11 102392562 102400286 - Pnpo protein_coding processed_transcript MGP_C57BL6NJ_T0032411.1 MGP_C57BL6NJ_G0019410.1 mouse_genomes_project 11 102392564 102400375 - MGP_C57BL6NJ_P0032411 Pnpo protein_coding protein_coding MGP_C57BL6NJ_T0031900.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90724222 90774227 - MGP_C57BL6NJ_P0031900 Rps6kb1 protein_coding protein_coding MGP_C57BL6NJ_T0031901.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90727384 90774227 - Rps6kb1 protein_coding retained_intron MGP_C57BL6NJ_T0031902.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90727950 90738236 - Rps6kb1 protein_coding processed_transcript MGP_C57BL6NJ_T0031903.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90740208 90746630 - Rps6kb1 protein_coding processed_transcript MGP_C57BL6NJ_T0031904.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90740573 90774196 - MGP_C57BL6NJ_P0031904 Rps6kb1 protein_coding protein_coding MGP_C57BL6NJ_T0031905.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90746234 90761214 - Rps6kb1 protein_coding retained_intron MGP_C57BL6NJ_T0031906.1 MGP_C57BL6NJ_G0019282.1 mouse_genomes_project 11 90761145 90774187 - MGP_C57BL6NJ_P0031906 Rps6kb1 protein_coding protein_coding MGP_C57BL6NJ_T0028969.1 MGP_C57BL6NJ_G0018544.1 mouse_genomes_project 11 33329521 33340162 + MGP_C57BL6NJ_P0028969 Kcnmb1 protein_coding protein_coding MGP_C57BL6NJ_T0028374.1 MGP_C57BL6NJ_G0018400.1 mouse_genomes_project 11 2962244 2964338 - MGP_C57BL6NJ_P0028374 Pgam2 protein_coding protein_coding MGP_C57BL6NJ_T0033055.1 MGP_C57BL6NJ_G0019601.1 mouse_genomes_project 11 107837411 107839703 + MGP_C57BL6NJ_P0033055 Arl4d protein_coding protein_coding MGP_C57BL6NJ_T0017632.1 MGP_C57BL6NJ_G0015549.1 mouse_genomes_project 11 19811515 19815295 + Gm12043 processed_transcript processed_transcript MGP_C57BL6NJ_T0034341.1 MGP_C57BL6NJ_G0019866.1 mouse_genomes_project 11 127192798 127201447 - MGP_C57BL6NJ_P0034341 Cbx4 protein_coding protein_coding MGP_C57BL6NJ_T0034342.1 MGP_C57BL6NJ_G0019866.1 mouse_genomes_project 11 127196598 127201447 - Cbx4 protein_coding processed_transcript MGP_C57BL6NJ_T0031292.1 MGP_C57BL6NJ_G0019133.1 mouse_genomes_project 11 80313274 80351660 + MGP_C57BL6NJ_P0031292 Slc6a4 protein_coding protein_coding MGP_C57BL6NJ_T0031293.1 MGP_C57BL6NJ_G0019133.1 mouse_genomes_project 11 80313287 80351661 + MGP_C57BL6NJ_P0031293 Slc6a4 protein_coding protein_coding MGP_C57BL6NJ_T0031294.1 MGP_C57BL6NJ_G0019133.1 mouse_genomes_project 11 80328787 80332567 + MGP_C57BL6NJ_P0031294 Slc6a4 protein_coding protein_coding MGP_C57BL6NJ_T0031295.1 MGP_C57BL6NJ_G0019133.1 mouse_genomes_project 11 80337688 80341858 + Slc6a4 protein_coding retained_intron MGP_C57BL6NJ_T0033378.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695766 110800246 + MGP_C57BL6NJ_P0033378 protein_coding protein_coding MGP_C57BL6NJ_T0033379.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695855 110761547 + protein_coding retained_intron MGP_C57BL6NJ_T0033380.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695860 110772698 + MGP_C57BL6NJ_P0033380 protein_coding protein_coding MGP_C57BL6NJ_T0033381.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695891 110796591 + MGP_C57BL6NJ_P0033381 protein_coding protein_coding MGP_C57BL6NJ_T0033382.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695949 110772782 + MGP_C57BL6NJ_P0033382 protein_coding protein_coding MGP_C57BL6NJ_T0033383.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695955 110772758 + protein_coding processed_transcript MGP_C57BL6NJ_T0033384.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695957 110761154 + MGP_C57BL6NJ_P0033384 protein_coding protein_coding MGP_C57BL6NJ_T0033385.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110695960 110796375 + MGP_C57BL6NJ_P0033385 protein_coding protein_coding MGP_C57BL6NJ_T0033386.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110747401 110796343 + MGP_C57BL6NJ_P0033386 protein_coding protein_coding MGP_C57BL6NJ_T0033387.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110747401 110796343 + MGP_C57BL6NJ_P0033387 protein_coding protein_coding MGP_C57BL6NJ_T0033388.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110784950 110796397 + protein_coding processed_transcript MGP_C57BL6NJ_T0033389.1 MGP_C57BL6NJ_G0019666.1 mouse_genomes_project 11 110788857 110796366 + protein_coding processed_transcript MGP_C57BL6NJ_T0013077.1 MGP_C57BL6NJ_G0011122.1 mouse_genomes_project 11 122139776 122140078 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030264.1 MGP_C57BL6NJ_G0018892.1 mouse_genomes_project 11 70877685 70946136 + MGP_C57BL6NJ_P0030264 Pik3r5 protein_coding protein_coding MGP_C57BL6NJ_T0030265.1 MGP_C57BL6NJ_G0018892.1 mouse_genomes_project 11 70877689 70924715 + Pik3r5 protein_coding processed_transcript MGP_C57BL6NJ_T0030266.1 MGP_C57BL6NJ_G0018892.1 mouse_genomes_project 11 70877724 70885937 + Pik3r5 protein_coding processed_transcript MGP_C57BL6NJ_T0030267.1 MGP_C57BL6NJ_G0018892.1 mouse_genomes_project 11 70921745 70944546 + Pik3r5 protein_coding processed_transcript MGP_C57BL6NJ_T0030268.1 MGP_C57BL6NJ_G0018892.1 mouse_genomes_project 11 70923431 70941627 + Pik3r5 protein_coding processed_transcript MGP_C57BL6NJ_T0102731.1 MGP_C57BL6NJ_G0040526.1 mouse_genomes_project 11 46801063 46801363 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101032.1 MGP_C57BL6NJ_G0039078.1 mouse_genomes_project 11 49263324 49263391 + Gm25296 snoRNA snoRNA MGP_C57BL6NJ_T0030755.1 MGP_C57BL6NJ_G0018996.1 mouse_genomes_project 11 73314981 73316009 + MGP_C57BL6NJ_P0030755 4930544D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0030756.1 MGP_C57BL6NJ_G0018996.1 mouse_genomes_project 11 73315027 73316004 + 4930544D05Rik protein_coding retained_intron MGP_C57BL6NJ_T0030757.1 MGP_C57BL6NJ_G0018996.1 mouse_genomes_project 11 73315030 73316024 + MGP_C57BL6NJ_P0030757 4930544D05Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030758.1 MGP_C57BL6NJ_G0018996.1 mouse_genomes_project 11 73315043 73316011 + MGP_C57BL6NJ_P0030758 4930544D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0012937.1 MGP_C57BL6NJ_G0010982.1 mouse_genomes_project 11 62657636 62660237 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032967.1 MGP_C57BL6NJ_G0019582.1 mouse_genomes_project 11 107371647 107372794 - MGP_C57BL6NJ_P0032967 Coa3 protein_coding protein_coding MGP_C57BL6NJ_T0032968.1 MGP_C57BL6NJ_G0019582.1 mouse_genomes_project 11 107372017 107372623 - MGP_C57BL6NJ_P0032968 Coa3 protein_coding protein_coding MGP_C57BL6NJ_T0012853.1 MGP_C57BL6NJ_G0010898.1 mouse_genomes_project 11 29765905 29766655 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006512.1 MGP_C57BL6NJ_G0005425.1 mouse_genomes_project 11 118992711 118997762 - Gm11674 lincRNA lincRNA MGP_C57BL6NJ_T0017642.1 MGP_C57BL6NJ_G0015556.1 mouse_genomes_project 11 29277310 29293326 + Gm8098 processed_transcript processed_transcript MGP_C57BL6NJ_T0029815.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61397574 61467163 + protein_coding processed_transcript MGP_C57BL6NJ_T0029816.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61398764 61523924 + MGP_C57BL6NJ_P0029816 protein_coding protein_coding MGP_C57BL6NJ_T0029817.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61398776 61516949 + MGP_C57BL6NJ_P0029817 protein_coding protein_coding MGP_C57BL6NJ_T0029818.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61398776 61523918 + MGP_C57BL6NJ_P0029818 protein_coding protein_coding MGP_C57BL6NJ_T0029819.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61398776 61516949 + MGP_C57BL6NJ_P0029819 protein_coding protein_coding MGP_C57BL6NJ_T0029820.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61467158 61517328 + MGP_C57BL6NJ_P0029820 protein_coding protein_coding MGP_C57BL6NJ_T0029821.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61471027 61516949 + MGP_C57BL6NJ_P0029821 protein_coding protein_coding MGP_C57BL6NJ_T0029822.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61480326 61489716 + protein_coding processed_transcript MGP_C57BL6NJ_T0029823.1 MGP_C57BL6NJ_G0018796.1 mouse_genomes_project 11 61500898 61516949 + MGP_C57BL6NJ_P0029823 protein_coding protein_coding MGP_C57BL6NJ_T0032204.1 MGP_C57BL6NJ_G0019353.1 mouse_genomes_project 11 99647967 99660146 - Rsad1 protein_coding processed_transcript MGP_C57BL6NJ_T0032205.1 MGP_C57BL6NJ_G0019353.1 mouse_genomes_project 11 99647967 99660090 - MGP_C57BL6NJ_P0032205 Rsad1 protein_coding protein_coding MGP_C57BL6NJ_T0032206.1 MGP_C57BL6NJ_G0019353.1 mouse_genomes_project 11 99652719 99659683 - Rsad1 protein_coding processed_transcript MGP_C57BL6NJ_T0032207.1 MGP_C57BL6NJ_G0019353.1 mouse_genomes_project 11 99652784 99659493 - Rsad1 protein_coding processed_transcript MGP_C57BL6NJ_T0030539.1 MGP_C57BL6NJ_G0018954.1 mouse_genomes_project 11 72486938 72488273 - MGP_C57BL6NJ_P0030539 Tmem95 protein_coding protein_coding MGP_C57BL6NJ_T0098806.1 MGP_C57BL6NJ_G0036870.1 mouse_genomes_project 11 60898685 60899160 - pseudogene pseudogene MGP_C57BL6NJ_T0012751.1 MGP_C57BL6NJ_G0010796.1 mouse_genomes_project 11 661677 662574 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009966.1 MGP_C57BL6NJ_G0008051.1 mouse_genomes_project 11 127276159 127276221 - Mir6934 miRNA miRNA MGP_C57BL6NJ_T0031040.1 MGP_C57BL6NJ_G0019068.1 mouse_genomes_project 11 76878208 76879141 - MGP_C57BL6NJ_P0031040 Olfr394 protein_coding protein_coding MGP_C57BL6NJ_T0003339.1 MGP_C57BL6NJ_G0003084.1 mouse_genomes_project 11 63419425 63420099 - B9d1os antisense antisense MGP_C57BL6NJ_T0029326.1 MGP_C57BL6NJ_G0018641.1 mouse_genomes_project 11 51470245 51489787 - MGP_C57BL6NJ_P0029326 Zfp354c protein_coding protein_coding MGP_C57BL6NJ_T0029327.1 MGP_C57BL6NJ_G0018641.1 mouse_genomes_project 11 51473723 51488555 - MGP_C57BL6NJ_P0029327 Zfp354c protein_coding protein_coding MGP_C57BL6NJ_T0029328.1 MGP_C57BL6NJ_G0018641.1 mouse_genomes_project 11 51476352 51489783 - Zfp354c protein_coding processed_transcript MGP_C57BL6NJ_T0029329.1 MGP_C57BL6NJ_G0018641.1 mouse_genomes_project 11 51488372 51489821 - Zfp354c protein_coding processed_transcript MGP_C57BL6NJ_T0029732.1 MGP_C57BL6NJ_G0018762.1 mouse_genomes_project 11 60325200 60326184 - MGP_C57BL6NJ_P0029732 protein_coding protein_coding MGP_C57BL6NJ_T0098807.1 MGP_C57BL6NJ_G0036871.1 mouse_genomes_project 11 73230082 73230660 - pseudogene pseudogene MGP_C57BL6NJ_T0003414.1 MGP_C57BL6NJ_G0003143.1 mouse_genomes_project 11 100396923 100410864 + Dlx4os antisense antisense MGP_C57BL6NJ_T0033234.1 MGP_C57BL6NJ_G0019630.1 mouse_genomes_project 11 108859876 108862940 - MGP_C57BL6NJ_P0033234 Gm11627 protein_coding protein_coding MGP_C57BL6NJ_T0033235.1 MGP_C57BL6NJ_G0019630.1 mouse_genomes_project 11 108859922 108862754 - Gm11627 protein_coding processed_transcript MGP_C57BL6NJ_T0033236.1 MGP_C57BL6NJ_G0019630.1 mouse_genomes_project 11 108859969 108862598 - MGP_C57BL6NJ_P0033236 Gm11627 protein_coding protein_coding MGP_C57BL6NJ_T0029461.1 MGP_C57BL6NJ_G0018680.1 mouse_genomes_project 11 54289888 54298498 + MGP_C57BL6NJ_P0029461 Zcchc10 protein_coding protein_coding MGP_C57BL6NJ_T0029462.1 MGP_C57BL6NJ_G0018680.1 mouse_genomes_project 11 54292615 54297676 + MGP_C57BL6NJ_P0029462 Zcchc10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003448.1 MGP_C57BL6NJ_G0003169.1 mouse_genomes_project 11 107599256 107600071 - Gm11626 antisense antisense MGP_C57BL6NJ_T0032305.1 MGP_C57BL6NJ_G0019382.1 mouse_genomes_project 11 101110673 101113847 + MGP_C57BL6NJ_P0032305 Phospho1 protein_coding protein_coding MGP_C57BL6NJ_T0032306.1 MGP_C57BL6NJ_G0019382.1 mouse_genomes_project 11 101112770 101113600 + MGP_C57BL6NJ_P0032306 Phospho1 protein_coding protein_coding MGP_C57BL6NJ_T0017718.1 MGP_C57BL6NJ_G0015599.1 mouse_genomes_project 11 103962202 103969781 - 1700003D09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017722.1 MGP_C57BL6NJ_G0015603.1 mouse_genomes_project 11 109626784 109629670 - 1700028N14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0032689.1 MGP_C57BL6NJ_G0019477.1 mouse_genomes_project 11 104990114 105014493 - MGP_C57BL6NJ_P0032689 Smarce1 protein_coding protein_coding MGP_C57BL6NJ_T0032690.1 MGP_C57BL6NJ_G0019477.1 mouse_genomes_project 11 105002696 105004308 - Smarce1 protein_coding processed_transcript MGP_C57BL6NJ_T0032691.1 MGP_C57BL6NJ_G0019477.1 mouse_genomes_project 11 105003105 105013921 - Smarce1 protein_coding processed_transcript MGP_C57BL6NJ_T0032692.1 MGP_C57BL6NJ_G0019477.1 mouse_genomes_project 11 105003185 105013889 - Smarce1 protein_coding processed_transcript MGP_C57BL6NJ_T0032693.1 MGP_C57BL6NJ_G0019477.1 mouse_genomes_project 11 105008774 105013922 - Smarce1 protein_coding processed_transcript MGP_C57BL6NJ_T0032295.1 MGP_C57BL6NJ_G0019379.1 mouse_genomes_project 11 100954386 100972683 + MGP_C57BL6NJ_P0032295 Phb protein_coding protein_coding MGP_C57BL6NJ_T0032296.1 MGP_C57BL6NJ_G0019379.1 mouse_genomes_project 11 100954434 100959477 + Phb protein_coding processed_transcript MGP_C57BL6NJ_T0032297.1 MGP_C57BL6NJ_G0019379.1 mouse_genomes_project 11 100954444 100956448 + Phb protein_coding processed_transcript MGP_C57BL6NJ_T0032298.1 MGP_C57BL6NJ_G0019379.1 mouse_genomes_project 11 100954498 100971618 + MGP_C57BL6NJ_P0032298 Phb protein_coding protein_coding MGP_C57BL6NJ_T0032299.1 MGP_C57BL6NJ_G0019379.1 mouse_genomes_project 11 100959284 100967127 + Phb protein_coding processed_transcript MGP_C57BL6NJ_T0033671.1 MGP_C57BL6NJ_G0019729.1 mouse_genomes_project 11 116651039 116655596 + Prkar1a protein_coding processed_transcript MGP_C57BL6NJ_T0033672.1 MGP_C57BL6NJ_G0019729.1 mouse_genomes_project 11 116651039 116672394 + MGP_C57BL6NJ_P0033672 Prkar1a protein_coding protein_coding MGP_C57BL6NJ_T0033673.1 MGP_C57BL6NJ_G0019729.1 mouse_genomes_project 11 116652209 116664491 + MGP_C57BL6NJ_P0033673 Prkar1a protein_coding protein_coding MGP_C57BL6NJ_T0033674.1 MGP_C57BL6NJ_G0019729.1 mouse_genomes_project 11 116652555 116672394 + MGP_C57BL6NJ_P0033674 Prkar1a protein_coding protein_coding MGP_C57BL6NJ_T0033675.1 MGP_C57BL6NJ_G0019729.1 mouse_genomes_project 11 116668681 116669714 + Prkar1a protein_coding processed_transcript MGP_C57BL6NJ_T0032711.1 MGP_C57BL6NJ_G0019490.1 mouse_genomes_project 11 105361280 105364618 - MGP_C57BL6NJ_P0032711 Krtap3-2 protein_coding protein_coding MGP_C57BL6NJ_T0033817.1 MGP_C57BL6NJ_G0019766.1 mouse_genomes_project 11 122801791 122823454 + MGP_C57BL6NJ_P0033817 Slc9a3r1 protein_coding protein_coding MGP_C57BL6NJ_T0102756.1 MGP_C57BL6NJ_G0040551.1 mouse_genomes_project 11 87656233 87656377 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003273.1 MGP_C57BL6NJ_G0003029.1 mouse_genomes_project 11 9948458 9971139 + Gm12002 antisense antisense MGP_C57BL6NJ_T0003274.1 MGP_C57BL6NJ_G0003029.1 mouse_genomes_project 11 9948477 9969839 + Gm12002 antisense antisense MGP_C57BL6NJ_T0003275.1 MGP_C57BL6NJ_G0003029.1 mouse_genomes_project 11 9956195 9985236 + Gm12002 antisense antisense MGP_C57BL6NJ_T0006415.1 MGP_C57BL6NJ_G0005355.1 mouse_genomes_project 11 63909240 63911062 + Gm12273 lincRNA lincRNA MGP_C57BL6NJ_T0012773.1 MGP_C57BL6NJ_G0010818.1 mouse_genomes_project 11 5465181 5466913 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003306.1 MGP_C57BL6NJ_G0003057.1 mouse_genomes_project 11 51994842 51996431 + Gm12569 antisense antisense MGP_C57BL6NJ_T0003307.1 MGP_C57BL6NJ_G0003057.1 mouse_genomes_project 11 51995502 51996286 + Gm12569 antisense antisense MGP_C57BL6NJ_T0017729.1 MGP_C57BL6NJ_G0015609.1 mouse_genomes_project 11 114362840 114382142 - A830035A12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0032243.1 MGP_C57BL6NJ_G0019365.1 mouse_genomes_project 11 100216102 100216966 + MGP_C57BL6NJ_P0032243 Hils1 protein_coding protein_coding MGP_C57BL6NJ_T0003502.1 MGP_C57BL6NJ_G0003213.1 mouse_genomes_project 11 125197901 125203690 - Gm16045 antisense antisense MGP_C57BL6NJ_T0031742.1 MGP_C57BL6NJ_G0019244.1 mouse_genomes_project 11 87455567 87460312 - MGP_C57BL6NJ_P0031742 Ccl5 protein_coding protein_coding MGP_C57BL6NJ_T0031743.1 MGP_C57BL6NJ_G0019244.1 mouse_genomes_project 11 87458517 87460307 - Ccl5 protein_coding retained_intron MGP_C57BL6NJ_T0030875.1 MGP_C57BL6NJ_G0019016.1 mouse_genomes_project 11 73907970 73975267 - MGP_C57BL6NJ_P0030875 Nlrp1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030876.1 MGP_C57BL6NJ_G0019016.1 mouse_genomes_project 11 73907970 73949060 - MGP_C57BL6NJ_P0030876 Nlrp1b protein_coding protein_coding MGP_C57BL6NJ_T0030877.1 MGP_C57BL6NJ_G0019016.1 mouse_genomes_project 11 73907995 73975267 - MGP_C57BL6NJ_P0030877 Nlrp1b protein_coding protein_coding MGP_C57BL6NJ_T0030878.1 MGP_C57BL6NJ_G0019016.1 mouse_genomes_project 11 73910857 73948902 - MGP_C57BL6NJ_P0030878 Nlrp1b protein_coding protein_coding MGP_C57BL6NJ_T0030879.1 MGP_C57BL6NJ_G0019016.1 mouse_genomes_project 11 73910864 73973001 - MGP_C57BL6NJ_P0030879 Nlrp1b protein_coding protein_coding MGP_C57BL6NJ_T0012899.1 MGP_C57BL6NJ_G0010944.1 mouse_genomes_project 11 50293016 50293503 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003456.1 MGP_C57BL6NJ_G0003177.1 mouse_genomes_project 11 109552222 109554409 - Gm20511 antisense antisense MGP_C57BL6NJ_T0031330.1 MGP_C57BL6NJ_G0019140.1 mouse_genomes_project 11 80878088 80883359 - MGP_C57BL6NJ_P0031330 Trp53i13 protein_coding protein_coding MGP_C57BL6NJ_T0031331.1 MGP_C57BL6NJ_G0019140.1 mouse_genomes_project 11 80878600 80882752 - Trp53i13 protein_coding processed_transcript MGP_C57BL6NJ_T0031332.1 MGP_C57BL6NJ_G0019140.1 mouse_genomes_project 11 80878959 80883024 - Trp53i13 protein_coding processed_transcript MGP_C57BL6NJ_T0031333.1 MGP_C57BL6NJ_G0019140.1 mouse_genomes_project 11 80879090 80885683 - MGP_C57BL6NJ_P0031333 Trp53i13 protein_coding protein_coding MGP_C57BL6NJ_T0031334.1 MGP_C57BL6NJ_G0019140.1 mouse_genomes_project 11 80882732 80885932 - Trp53i13 protein_coding processed_transcript MGP_C57BL6NJ_T0098960.1 MGP_C57BL6NJ_G0037024.1 mouse_genomes_project 11 51468816 51468929 + Gm23392 rRNA rRNA MGP_C57BL6NJ_T0028790.1 MGP_C57BL6NJ_G0018498.1 mouse_genomes_project 11 28185486 28211214 - MGP_C57BL6NJ_P0028790 Cfap36 protein_coding protein_coding MGP_C57BL6NJ_T0028791.1 MGP_C57BL6NJ_G0018498.1 mouse_genomes_project 11 28189726 28211093 - Cfap36 protein_coding retained_intron MGP_C57BL6NJ_T0028792.1 MGP_C57BL6NJ_G0018498.1 mouse_genomes_project 11 28194544 28210727 - MGP_C57BL6NJ_P0028792 Cfap36 protein_coding protein_coding MGP_C57BL6NJ_T0028793.1 MGP_C57BL6NJ_G0018498.1 mouse_genomes_project 11 28207628 28210873 - Cfap36 protein_coding retained_intron MGP_C57BL6NJ_T0028794.1 MGP_C57BL6NJ_G0018498.1 mouse_genomes_project 11 28208537 28210997 - Cfap36 protein_coding retained_intron MGP_C57BL6NJ_T0012798.1 MGP_C57BL6NJ_G0010843.1 mouse_genomes_project 11 16303617 16304149 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032658.1 MGP_C57BL6NJ_G0019470.1 mouse_genomes_project 11 104635734 104656142 + MGP_C57BL6NJ_P0032658 Cdc6 protein_coding protein_coding MGP_C57BL6NJ_T0032659.1 MGP_C57BL6NJ_G0019470.1 mouse_genomes_project 11 104635782 104656146 + MGP_C57BL6NJ_P0032659 Cdc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032660.1 MGP_C57BL6NJ_G0019470.1 mouse_genomes_project 11 104636084 104654099 + MGP_C57BL6NJ_P0032660 Cdc6 protein_coding protein_coding MGP_C57BL6NJ_T0032661.1 MGP_C57BL6NJ_G0019470.1 mouse_genomes_project 11 104652671 104653667 + Cdc6 protein_coding retained_intron MGP_C57BL6NJ_T0003465.1 MGP_C57BL6NJ_G0003185.1 mouse_genomes_project 11 112676165 112676867 - Gm11646 antisense antisense MGP_C57BL6NJ_T0028483.1 MGP_C57BL6NJ_G0018427.1 mouse_genomes_project 11 4491467 4499279 - MGP_C57BL6NJ_P0028483 Igfbp3 protein_coding protein_coding MGP_C57BL6NJ_T0028484.1 MGP_C57BL6NJ_G0018427.1 mouse_genomes_project 11 4493067 4499305 - MGP_C57BL6NJ_P0028484 Igfbp3 protein_coding protein_coding MGP_C57BL6NJ_T0032166.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99423295 99487145 - MGP_C57BL6NJ_P0032166 Abcc3 protein_coding protein_coding MGP_C57BL6NJ_T0032167.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99423298 99487145 - MGP_C57BL6NJ_P0032167 Abcc3 protein_coding protein_coding MGP_C57BL6NJ_T0032168.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99423655 99431124 - Abcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0032169.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99447447 99458684 - Abcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0032170.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99448092 99487089 - Abcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0032171.1 MGP_C57BL6NJ_G0019348.1 mouse_genomes_project 11 99467434 99487166 - Abcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0031500.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 81999424 82011389 + MGP_C57BL6NJ_P0031500 Poldip2 protein_coding protein_coding MGP_C57BL6NJ_T0031501.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 81999619 82001213 + Poldip2 protein_coding processed_transcript MGP_C57BL6NJ_T0031502.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 81999647 82010824 + MGP_C57BL6NJ_P0031502 Poldip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031503.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 82003461 82006585 + Poldip2 protein_coding retained_intron MGP_C57BL6NJ_T0031504.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 82004051 82007238 + Poldip2 protein_coding retained_intron MGP_C57BL6NJ_T0031505.1 MGP_C57BL6NJ_G0019176.1 mouse_genomes_project 11 82006983 82007914 + Poldip2 protein_coding retained_intron MGP_C57BL6NJ_T0017750.1 MGP_C57BL6NJ_G0015613.1 mouse_genomes_project 11 125389860 125402539 + Gm11732 processed_transcript processed_transcript MGP_C57BL6NJ_T0034629.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129068941 129071003 + Gps1 protein_coding retained_intron MGP_C57BL6NJ_T0034630.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129068944 129092532 + MGP_C57BL6NJ_P0034630 Gps1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034631.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129068944 129092846 + MGP_C57BL6NJ_P0034631 Gps1 protein_coding protein_coding MGP_C57BL6NJ_T0034632.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129068974 129092851 + MGP_C57BL6NJ_P0034632 Gps1 protein_coding protein_coding MGP_C57BL6NJ_T0034633.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129069245 129084798 + MGP_C57BL6NJ_P0034633 Gps1 protein_coding protein_coding MGP_C57BL6NJ_T0034634.1 MGP_C57BL6NJ_G0019920.1 mouse_genomes_project 11 129073831 129074821 + Gps1 protein_coding retained_intron MGP_C57BL6NJ_T0033726.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121001160 121017202 + MGP_C57BL6NJ_P0033726 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0033727.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121001319 121015147 + MGP_C57BL6NJ_P0033727 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0033728.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121006679 121008242 + Cog1 protein_coding retained_intron MGP_C57BL6NJ_T0033729.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121009367 121022136 + MGP_C57BL6NJ_P0033729 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0033730.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121009504 121014377 + MGP_C57BL6NJ_P0033730 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0033731.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121009522 121014413 + MGP_C57BL6NJ_P0033731 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0033732.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121010567 121015148 + MGP_C57BL6NJ_P0033732 Cog1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033733.1 MGP_C57BL6NJ_G0019743.1 mouse_genomes_project 11 121011272 121015148 + MGP_C57BL6NJ_P0033733 Cog1 protein_coding protein_coding MGP_C57BL6NJ_T0028881.1 MGP_C57BL6NJ_G0018519.1 mouse_genomes_project 11 31170393 31230876 + MGP_C57BL6NJ_P0028881 Nsg2 protein_coding protein_coding MGP_C57BL6NJ_T0028882.1 MGP_C57BL6NJ_G0018519.1 mouse_genomes_project 11 31170393 31187664 + MGP_C57BL6NJ_P0028882 Nsg2 protein_coding protein_coding MGP_C57BL6NJ_T0028883.1 MGP_C57BL6NJ_G0018519.1 mouse_genomes_project 11 31170432 31203036 + MGP_C57BL6NJ_P0028883 Nsg2 protein_coding protein_coding MGP_C57BL6NJ_T0033544.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113502230 113515291 - MGP_C57BL6NJ_P0033544 Polg2 protein_coding protein_coding MGP_C57BL6NJ_T0033545.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113502230 113515313 - MGP_C57BL6NJ_P0033545 Polg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033546.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113502710 113515249 - MGP_C57BL6NJ_P0033546 Polg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033547.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113505021 113515249 - MGP_C57BL6NJ_P0033547 Polg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033548.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113507778 113508987 - Polg2 protein_coding retained_intron MGP_C57BL6NJ_T0033549.1 MGP_C57BL6NJ_G0019704.1 mouse_genomes_project 11 113510651 113515278 - MGP_C57BL6NJ_P0033549 Polg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0006477.1 MGP_C57BL6NJ_G0005399.1 mouse_genomes_project 11 93694414 93696665 - Gm11497 lincRNA lincRNA MGP_C57BL6NJ_T0034153.1 MGP_C57BL6NJ_G0019827.1 mouse_genomes_project 11 124493781 124511993 + MGP_C57BL6NJ_P0034153 protein_coding protein_coding MGP_C57BL6NJ_T0034154.1 MGP_C57BL6NJ_G0019827.1 mouse_genomes_project 11 124493781 124511698 + MGP_C57BL6NJ_P0034154 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034155.1 MGP_C57BL6NJ_G0019827.1 mouse_genomes_project 11 124494102 124511995 + MGP_C57BL6NJ_P0034155 protein_coding protein_coding MGP_C57BL6NJ_T0034156.1 MGP_C57BL6NJ_G0019827.1 mouse_genomes_project 11 124500068 124511993 + MGP_C57BL6NJ_P0034156 protein_coding protein_coding MGP_C57BL6NJ_T0034157.1 MGP_C57BL6NJ_G0019827.1 mouse_genomes_project 11 124500116 124503077 + protein_coding retained_intron MGP_C57BL6NJ_T0101088.1 MGP_C57BL6NJ_G0039134.1 mouse_genomes_project 11 124517753 124517828 + Snord1b snoRNA snoRNA MGP_C57BL6NJ_T0012949.1 MGP_C57BL6NJ_G0010994.1 mouse_genomes_project 11 67207527 67208017 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012823.1 MGP_C57BL6NJ_G0010868.1 mouse_genomes_project 11 20175022 20175668 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029919.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62575536 62618018 - MGP_C57BL6NJ_P0029919 Top3a protein_coding protein_coding MGP_C57BL6NJ_T0029920.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62575537 62617940 - MGP_C57BL6NJ_P0029920 Top3a protein_coding protein_coding MGP_C57BL6NJ_T0029921.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62577369 62617918 - MGP_C57BL6NJ_P0029921 Top3a protein_coding protein_coding MGP_C57BL6NJ_T0029922.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62577712 62617917 - MGP_C57BL6NJ_P0029922 Top3a protein_coding protein_coding MGP_C57BL6NJ_T0029923.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62584935 62588157 - Top3a protein_coding retained_intron MGP_C57BL6NJ_T0029924.1 MGP_C57BL6NJ_G0018816.1 mouse_genomes_project 11 62597195 62617952 - MGP_C57BL6NJ_P0029924 Top3a protein_coding protein_coding MGP_C57BL6NJ_T0029699.1 MGP_C57BL6NJ_G0018742.1 mouse_genomes_project 11 59811751 59829800 + MGP_C57BL6NJ_P0029699 Sh3bp5l protein_coding protein_coding MGP_C57BL6NJ_T0029700.1 MGP_C57BL6NJ_G0018742.1 mouse_genomes_project 11 59811777 59829797 + MGP_C57BL6NJ_P0029700 Sh3bp5l protein_coding protein_coding MGP_C57BL6NJ_T0029701.1 MGP_C57BL6NJ_G0018742.1 mouse_genomes_project 11 59812070 59812537 + Sh3bp5l protein_coding processed_transcript MGP_C57BL6NJ_T0029702.1 MGP_C57BL6NJ_G0018742.1 mouse_genomes_project 11 59812302 59829792 + Sh3bp5l protein_coding processed_transcript MGP_C57BL6NJ_T0029703.1 MGP_C57BL6NJ_G0018742.1 mouse_genomes_project 11 59827383 59829022 + Sh3bp5l protein_coding processed_transcript MGP_C57BL6NJ_T0017640.1 MGP_C57BL6NJ_G0015554.1 mouse_genomes_project 11 22177774 22178559 - Gm12060 processed_transcript processed_transcript MGP_C57BL6NJ_T0031691.1 MGP_C57BL6NJ_G0019228.1 mouse_genomes_project 11 86762135 86762957 + Slfn5 protein_coding processed_transcript MGP_C57BL6NJ_T0031692.1 MGP_C57BL6NJ_G0019228.1 mouse_genomes_project 11 86762881 86772312 + MGP_C57BL6NJ_P0031692 Slfn5 protein_coding protein_coding MGP_C57BL6NJ_T0031693.1 MGP_C57BL6NJ_G0019228.1 mouse_genomes_project 11 86762888 86775241 + MGP_C57BL6NJ_P0031693 Slfn5 protein_coding protein_coding MGP_C57BL6NJ_T0031694.1 MGP_C57BL6NJ_G0019228.1 mouse_genomes_project 11 86765447 86774206 + MGP_C57BL6NJ_P0031694 Slfn5 protein_coding protein_coding MGP_C57BL6NJ_T0028592.1 MGP_C57BL6NJ_G0018453.1 mouse_genomes_project 11 16021036 16037063 - MGP_C57BL6NJ_P0028592 Etaa1 protein_coding protein_coding MGP_C57BL6NJ_T0003451.1 MGP_C57BL6NJ_G0003172.1 mouse_genomes_project 11 108163172 108171325 + 4930417O22Rik antisense antisense MGP_C57BL6NJ_T0032777.1 MGP_C57BL6NJ_G0019542.1 mouse_genomes_project 11 106302666 106311460 - MGP_C57BL6NJ_P0032777 Hap1 protein_coding protein_coding MGP_C57BL6NJ_T0032778.1 MGP_C57BL6NJ_G0019542.1 mouse_genomes_project 11 106304197 106311419 - MGP_C57BL6NJ_P0032778 Hap1 protein_coding protein_coding MGP_C57BL6NJ_T0032779.1 MGP_C57BL6NJ_G0019542.1 mouse_genomes_project 11 106304636 106309372 - MGP_C57BL6NJ_P0032779 Hap1 protein_coding protein_coding MGP_C57BL6NJ_T0032780.1 MGP_C57BL6NJ_G0019542.1 mouse_genomes_project 11 106304756 106307237 - MGP_C57BL6NJ_P0032780 Hap1 protein_coding protein_coding MGP_C57BL6NJ_T0032781.1 MGP_C57BL6NJ_G0019542.1 mouse_genomes_project 11 106307587 106310715 - MGP_C57BL6NJ_P0032781 Hap1 protein_coding protein_coding MGP_C57BL6NJ_T0003277.1 MGP_C57BL6NJ_G0003031.1 mouse_genomes_project 11 16037157 16042762 + Etaa1os antisense antisense MGP_C57BL6NJ_T0003278.1 MGP_C57BL6NJ_G0003031.1 mouse_genomes_project 11 16037191 16038286 + Etaa1os antisense antisense MGP_C57BL6NJ_T0013065.1 MGP_C57BL6NJ_G0011110.1 mouse_genomes_project 11 114133128 114133479 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017656.1 MGP_C57BL6NJ_G0015565.1 mouse_genomes_project 11 59804015 59805467 + 1700047K16Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0009958.1 MGP_C57BL6NJ_G0008043.1 mouse_genomes_project 11 114856929 114856998 + Mir7223 miRNA miRNA MGP_C57BL6NJ_T0029889.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62179335 62195753 - MGP_C57BL6NJ_P0029889 Atpaf2 protein_coding protein_coding MGP_C57BL6NJ_T0029890.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62180187 62195720 - MGP_C57BL6NJ_P0029890 Atpaf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029891.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62182546 62195744 - Atpaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0029892.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62184503 62195737 - Atpaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0029893.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62186082 62197159 - Atpaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0029894.1 MGP_C57BL6NJ_G0018808.1 mouse_genomes_project 11 62187916 62195738 - Atpaf2 protein_coding retained_intron MGP_C57BL6NJ_T0032749.1 MGP_C57BL6NJ_G0019526.1 mouse_genomes_project 11 105921387 105941208 - MGP_C57BL6NJ_P0032749 Krt33b protein_coding protein_coding MGP_C57BL6NJ_T0031494.1 MGP_C57BL6NJ_G0019174.1 mouse_genomes_project 11 81990719 81992354 + MGP_C57BL6NJ_P0031494 Sebox protein_coding protein_coding MGP_C57BL6NJ_T0031495.1 MGP_C57BL6NJ_G0019174.1 mouse_genomes_project 11 81990771 81992347 + MGP_C57BL6NJ_P0031495 Sebox protein_coding protein_coding MGP_C57BL6NJ_T0029232.1 MGP_C57BL6NJ_G0018615.1 mouse_genomes_project 11 49853742 49854693 + MGP_C57BL6NJ_P0029232 Olfr10 protein_coding protein_coding MGP_C57BL6NJ_T0029950.1 MGP_C57BL6NJ_G0018823.1 mouse_genomes_project 11 62887521 62939117 + MGP_C57BL6NJ_P0029950 Kcnj12 protein_coding protein_coding MGP_C57BL6NJ_T0029951.1 MGP_C57BL6NJ_G0018823.1 mouse_genomes_project 11 62933789 62939117 + MGP_C57BL6NJ_P0029951 Kcnj12 protein_coding protein_coding MGP_C57BL6NJ_T0029952.1 MGP_C57BL6NJ_G0018823.1 mouse_genomes_project 11 62933789 62939113 + MGP_C57BL6NJ_P0029952 Kcnj12 protein_coding protein_coding MGP_C57BL6NJ_T0029592.1 MGP_C57BL6NJ_G0018710.1 mouse_genomes_project 11 55857938 55932599 - MGP_C57BL6NJ_P0029592 Cdc42se2 protein_coding protein_coding MGP_C57BL6NJ_T0029593.1 MGP_C57BL6NJ_G0018710.1 mouse_genomes_project 11 55864052 55932570 - MGP_C57BL6NJ_P0029593 Cdc42se2 protein_coding protein_coding MGP_C57BL6NJ_T0029594.1 MGP_C57BL6NJ_G0018710.1 mouse_genomes_project 11 55881189 55932565 - Cdc42se2 protein_coding processed_transcript MGP_C57BL6NJ_T0029595.1 MGP_C57BL6NJ_G0018710.1 mouse_genomes_project 11 55881513 55932549 - Cdc42se2 protein_coding processed_transcript MGP_C57BL6NJ_T0029596.1 MGP_C57BL6NJ_G0018710.1 mouse_genomes_project 11 55881666 55904261 - Cdc42se2 protein_coding processed_transcript MGP_C57BL6NJ_T0011553.1 MGP_C57BL6NJ_G0009638.1 mouse_genomes_project 11 610640 610787 - Gm27640 misc_RNA misc_RNA MGP_C57BL6NJ_T0030671.1 MGP_C57BL6NJ_G0018977.1 mouse_genomes_project 11 72842768 72848380 - MGP_C57BL6NJ_P0030671 Bcl6b protein_coding protein_coding MGP_C57BL6NJ_T0030672.1 MGP_C57BL6NJ_G0018977.1 mouse_genomes_project 11 72847180 72848318 - MGP_C57BL6NJ_P0030672 Bcl6b protein_coding protein_coding MGP_C57BL6NJ_T0030673.1 MGP_C57BL6NJ_G0018977.1 mouse_genomes_project 11 72847249 72848439 - Bcl6b protein_coding retained_intron MGP_C57BL6NJ_T0029368.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52023090 52034987 + MGP_C57BL6NJ_P0029368 protein_coding protein_coding MGP_C57BL6NJ_T0029369.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52023090 52033380 + MGP_C57BL6NJ_P0029369 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029370.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024474 52042392 + MGP_C57BL6NJ_P0029370 protein_coding protein_coding MGP_C57BL6NJ_T0029371.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024510 52036620 + MGP_C57BL6NJ_P0029371 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029372.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024522 52028865 + protein_coding retained_intron MGP_C57BL6NJ_T0029373.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024524 52033725 + protein_coding retained_intron MGP_C57BL6NJ_T0029374.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024529 52034983 + MGP_C57BL6NJ_P0029374 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029375.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024534 52033421 + protein_coding retained_intron MGP_C57BL6NJ_T0029376.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52024546 52042394 + MGP_C57BL6NJ_P0029376 protein_coding protein_coding MGP_C57BL6NJ_T0029377.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52033359 52038570 + protein_coding retained_intron MGP_C57BL6NJ_T0029378.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52034811 52042392 + MGP_C57BL6NJ_P0029378 protein_coding protein_coding MGP_C57BL6NJ_T0029379.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52034972 52037598 + protein_coding retained_intron MGP_C57BL6NJ_T0029380.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52036268 52036873 + protein_coding retained_intron MGP_C57BL6NJ_T0029381.1 MGP_C57BL6NJ_G0018656.1 mouse_genomes_project 11 52040736 52041828 + protein_coding retained_intron MGP_C57BL6NJ_T0032068.1 MGP_C57BL6NJ_G0019323.1 mouse_genomes_project 11 93590905 93633147 - MGP_C57BL6NJ_P0032068 Dgke protein_coding protein_coding MGP_C57BL6NJ_T0032069.1 MGP_C57BL6NJ_G0019323.1 mouse_genomes_project 11 93593219 93624147 - MGP_C57BL6NJ_P0032069 Dgke protein_coding protein_coding MGP_C57BL6NJ_T0032070.1 MGP_C57BL6NJ_G0019323.1 mouse_genomes_project 11 93594805 93624147 - MGP_C57BL6NJ_P0032070 Dgke protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013001.1 MGP_C57BL6NJ_G0011046.1 mouse_genomes_project 11 87633553 87633742 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012981.1 MGP_C57BL6NJ_G0011026.1 mouse_genomes_project 11 80916406 80918116 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012914.1 MGP_C57BL6NJ_G0010959.1 mouse_genomes_project 11 55529992 55530290 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011570.1 MGP_C57BL6NJ_G0009655.1 mouse_genomes_project 11 100205327 100205443 + Gm24877 misc_RNA misc_RNA MGP_C57BL6NJ_T0030215.1 MGP_C57BL6NJ_G0018879.1 mouse_genomes_project 11 69528245 69556142 + MGP_C57BL6NJ_P0030215 Myh1 protein_coding protein_coding MGP_C57BL6NJ_T0030216.1 MGP_C57BL6NJ_G0018879.1 mouse_genomes_project 11 69528304 69556062 + MGP_C57BL6NJ_P0030216 Myh1 protein_coding protein_coding MGP_C57BL6NJ_T0030217.1 MGP_C57BL6NJ_G0018879.1 mouse_genomes_project 11 69528331 69530449 + MGP_C57BL6NJ_P0030217 Myh1 protein_coding protein_coding MGP_C57BL6NJ_T0030218.1 MGP_C57BL6NJ_G0018879.1 mouse_genomes_project 11 69528597 69556140 + MGP_C57BL6NJ_P0030218 Myh1 protein_coding protein_coding MGP_C57BL6NJ_T0028870.1 MGP_C57BL6NJ_G0018515.1 mouse_genomes_project 11 30482285 30495053 - MGP_C57BL6NJ_P0028870 Stc2 protein_coding protein_coding MGP_C57BL6NJ_T0028871.1 MGP_C57BL6NJ_G0018515.1 mouse_genomes_project 11 30482964 30494082 - Stc2 protein_coding processed_transcript MGP_C57BL6NJ_T0028872.1 MGP_C57BL6NJ_G0018515.1 mouse_genomes_project 11 30490419 30493145 - Stc2 protein_coding processed_transcript MGP_C57BL6NJ_T0028873.1 MGP_C57BL6NJ_G0018515.1 mouse_genomes_project 11 30492977 30495026 - Stc2 protein_coding processed_transcript MGP_C57BL6NJ_T0028874.1 MGP_C57BL6NJ_G0018515.1 mouse_genomes_project 11 30492981 30494035 - Stc2 protein_coding processed_transcript MGP_C57BL6NJ_T0006436.1 MGP_C57BL6NJ_G0005372.1 mouse_genomes_project 11 74529143 74530213 - Gm12326 lincRNA lincRNA MGP_C57BL6NJ_T0006437.1 MGP_C57BL6NJ_G0005372.1 mouse_genomes_project 11 74529757 74530194 - Gm12326 lincRNA lincRNA MGP_C57BL6NJ_T0034300.1 MGP_C57BL6NJ_G0019858.1 mouse_genomes_project 11 126478438 126483839 - MGP_C57BL6NJ_P0034300 Lgals3bp protein_coding protein_coding MGP_C57BL6NJ_T0034301.1 MGP_C57BL6NJ_G0019858.1 mouse_genomes_project 11 126478438 126487780 - MGP_C57BL6NJ_P0034301 Lgals3bp protein_coding protein_coding MGP_C57BL6NJ_T0034302.1 MGP_C57BL6NJ_G0019858.1 mouse_genomes_project 11 126482294 126487540 - MGP_C57BL6NJ_P0034302 Lgals3bp protein_coding protein_coding MGP_C57BL6NJ_T0034303.1 MGP_C57BL6NJ_G0019858.1 mouse_genomes_project 11 126482496 126487560 - Lgals3bp protein_coding processed_transcript MGP_C57BL6NJ_T0034304.1 MGP_C57BL6NJ_G0019858.1 mouse_genomes_project 11 126485448 126486726 - MGP_C57BL6NJ_P0034304 Lgals3bp protein_coding protein_coding MGP_C57BL6NJ_T0031520.1 MGP_C57BL6NJ_G0019183.1 mouse_genomes_project 11 82443124 82484262 + MGP_C57BL6NJ_P0031520 Nos2 protein_coding protein_coding MGP_C57BL6NJ_T0031521.1 MGP_C57BL6NJ_G0019183.1 mouse_genomes_project 11 82447537 82483760 + MGP_C57BL6NJ_P0031521 Nos2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032230.1 MGP_C57BL6NJ_G0019361.1 mouse_genomes_project 11 99899125 99900358 + MGP_C57BL6NJ_P0032230 Cdc34b protein_coding protein_coding MGP_C57BL6NJ_T0032231.1 MGP_C57BL6NJ_G0019361.1 mouse_genomes_project 11 99899125 99900377 + MGP_C57BL6NJ_P0032231 Cdc34b protein_coding protein_coding MGP_C57BL6NJ_T0017651.1 MGP_C57BL6NJ_G0015563.1 mouse_genomes_project 11 54555700 54558318 - A430108G06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017652.1 MGP_C57BL6NJ_G0015563.1 mouse_genomes_project 11 54555776 54558326 - A430108G06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012992.1 MGP_C57BL6NJ_G0011037.1 mouse_genomes_project 11 83506674 83507415 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011552.1 MGP_C57BL6NJ_G0009637.1 mouse_genomes_project 11 610403 610491 - Gm27937 misc_RNA misc_RNA MGP_C57BL6NJ_T0033865.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123077863 123082081 - MGP_C57BL6NJ_P0033865 Atp5h protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033866.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079262 123081596 - Atp5h protein_coding processed_transcript MGP_C57BL6NJ_T0033867.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079262 123080592 - Atp5h protein_coding processed_transcript MGP_C57BL6NJ_T0033868.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079262 123083536 - MGP_C57BL6NJ_P0033868 Atp5h protein_coding protein_coding MGP_C57BL6NJ_T0033869.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079262 123083491 - MGP_C57BL6NJ_P0033869 Atp5h protein_coding protein_coding MGP_C57BL6NJ_T0033870.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079262 123083536 - MGP_C57BL6NJ_P0033870 Atp5h protein_coding protein_coding MGP_C57BL6NJ_T0033871.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079321 123082081 - MGP_C57BL6NJ_P0033871 Atp5h protein_coding protein_coding MGP_C57BL6NJ_T0033872.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123079391 123082315 - MGP_C57BL6NJ_P0033872 Atp5h protein_coding protein_coding MGP_C57BL6NJ_T0033873.1 MGP_C57BL6NJ_G0019778.1 mouse_genomes_project 11 123080426 123082647 - Atp5h protein_coding processed_transcript MGP_C57BL6NJ_T0029156.1 MGP_C57BL6NJ_G0018595.1 mouse_genomes_project 11 47044568 47062475 + MGP_C57BL6NJ_P0029156 Havcr1 protein_coding protein_coding MGP_C57BL6NJ_T0029157.1 MGP_C57BL6NJ_G0018595.1 mouse_genomes_project 11 47048939 47088173 + MGP_C57BL6NJ_P0029157 Havcr1 protein_coding protein_coding MGP_C57BL6NJ_T0029158.1 MGP_C57BL6NJ_G0018595.1 mouse_genomes_project 11 47056740 47088171 + MGP_C57BL6NJ_P0029158 Havcr1 protein_coding protein_coding MGP_C57BL6NJ_T0029159.1 MGP_C57BL6NJ_G0018595.1 mouse_genomes_project 11 47057397 47088173 + MGP_C57BL6NJ_P0029159 Havcr1 protein_coding protein_coding MGP_C57BL6NJ_T0029845.1 MGP_C57BL6NJ_G0018802.1 mouse_genomes_project 11 61721080 61722842 - MGP_C57BL6NJ_P0029845 Rasd1 protein_coding protein_coding MGP_C57BL6NJ_T0028191.1 MGP_C57BL6NJ_G0018359.1 mouse_genomes_project 11 875398 880800 + MGP_C57BL6NJ_P0028191 Dusp18 protein_coding protein_coding MGP_C57BL6NJ_T0028192.1 MGP_C57BL6NJ_G0018359.1 mouse_genomes_project 11 875398 882743 + MGP_C57BL6NJ_P0028192 Dusp18 protein_coding protein_coding MGP_C57BL6NJ_T0031723.1 MGP_C57BL6NJ_G0019238.1 mouse_genomes_project 11 87329659 87339357 + MGP_C57BL6NJ_P0031723 Rasl10b protein_coding protein_coding MGP_C57BL6NJ_T0031724.1 MGP_C57BL6NJ_G0019238.1 mouse_genomes_project 11 87330210 87341562 + MGP_C57BL6NJ_P0031724 Rasl10b protein_coding protein_coding MGP_C57BL6NJ_T0031725.1 MGP_C57BL6NJ_G0019238.1 mouse_genomes_project 11 87330210 87341560 + MGP_C57BL6NJ_P0031725 Rasl10b protein_coding protein_coding MGP_C57BL6NJ_T0031726.1 MGP_C57BL6NJ_G0019238.1 mouse_genomes_project 11 87330594 87341561 + MGP_C57BL6NJ_P0031726 Rasl10b protein_coding protein_coding MGP_C57BL6NJ_T0101062.1 MGP_C57BL6NJ_G0039108.1 mouse_genomes_project 11 83503036 83503168 - Gm24454 snoRNA snoRNA MGP_C57BL6NJ_T0003367.1 MGP_C57BL6NJ_G0003107.1 mouse_genomes_project 11 71827114 71828441 + Cntrobos antisense antisense MGP_C57BL6NJ_T0034506.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128714320 128722005 + Hgs protein_coding processed_transcript MGP_C57BL6NJ_T0034507.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128714320 128730630 + MGP_C57BL6NJ_P0034507 Hgs protein_coding protein_coding MGP_C57BL6NJ_T0034508.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128714320 128724044 + MGP_C57BL6NJ_P0034508 Hgs protein_coding protein_coding MGP_C57BL6NJ_T0034509.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128714320 128730625 + MGP_C57BL6NJ_P0034509 Hgs protein_coding protein_coding MGP_C57BL6NJ_T0034510.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128714320 128730625 + MGP_C57BL6NJ_P0034510 Hgs protein_coding protein_coding MGP_C57BL6NJ_T0034511.1 MGP_C57BL6NJ_G0019895.1 mouse_genomes_project 11 128724226 128726899 + MGP_C57BL6NJ_P0034511 Hgs protein_coding protein_coding MGP_C57BL6NJ_T0101086.1 MGP_C57BL6NJ_G0039132.1 mouse_genomes_project 11 123446501 123446636 + Gm23699 snoRNA snoRNA MGP_C57BL6NJ_T0033940.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123307633 123321629 - MGP_C57BL6NJ_P0033940 Slc25a19 protein_coding protein_coding MGP_C57BL6NJ_T0033941.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123308901 123316264 - MGP_C57BL6NJ_P0033941 Slc25a19 protein_coding protein_coding MGP_C57BL6NJ_T0033942.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123310010 123311347 - Slc25a19 protein_coding processed_transcript MGP_C57BL6NJ_T0033943.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123311103 123321546 - Slc25a19 protein_coding processed_transcript MGP_C57BL6NJ_T0033944.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123316445 123321545 - Slc25a19 protein_coding processed_transcript MGP_C57BL6NJ_T0033945.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123316850 123321551 - Slc25a19 protein_coding processed_transcript MGP_C57BL6NJ_T0033946.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123317315 123321720 - Slc25a19 protein_coding processed_transcript MGP_C57BL6NJ_T0033947.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123317637 123321551 - MGP_C57BL6NJ_P0033947 Slc25a19 protein_coding protein_coding MGP_C57BL6NJ_T0033948.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123317658 123321387 - MGP_C57BL6NJ_P0033948 Slc25a19 protein_coding protein_coding MGP_C57BL6NJ_T0033949.1 MGP_C57BL6NJ_G0019790.1 mouse_genomes_project 11 123317713 123321569 - MGP_C57BL6NJ_P0033949 Slc25a19 protein_coding protein_coding MGP_C57BL6NJ_T0028760.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25253720 25384855 - MGP_C57BL6NJ_P0028760 Vrk2 protein_coding protein_coding MGP_C57BL6NJ_T0028761.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25253802 25387046 - MGP_C57BL6NJ_P0028761 Vrk2 protein_coding protein_coding MGP_C57BL6NJ_T0028762.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25325214 25386748 - Vrk2 protein_coding retained_intron MGP_C57BL6NJ_T0028763.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25325630 25349211 - Vrk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028764.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25336676 25387049 - Vrk2 protein_coding retained_intron MGP_C57BL6NJ_T0028765.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25347693 25387125 - MGP_C57BL6NJ_P0028765 Vrk2 protein_coding protein_coding MGP_C57BL6NJ_T0028766.1 MGP_C57BL6NJ_G0018491.1 mouse_genomes_project 11 25376422 25386729 - Vrk2 protein_coding processed_transcript MGP_C57BL6NJ_T0009845.1 MGP_C57BL6NJ_G0007930.1 mouse_genomes_project 11 3620268 3620332 + Mir7651 miRNA miRNA MGP_C57BL6NJ_T0034440.1 MGP_C57BL6NJ_G0019883.1 mouse_genomes_project 11 128308555 128310333 + MGP_C57BL6NJ_P0034440 1810043H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0034441.1 MGP_C57BL6NJ_G0019883.1 mouse_genomes_project 11 128308571 128309991 + MGP_C57BL6NJ_P0034441 1810043H04Rik protein_coding protein_coding MGP_C57BL6NJ_T0034442.1 MGP_C57BL6NJ_G0019883.1 mouse_genomes_project 11 128308726 128310042 + 1810043H04Rik protein_coding retained_intron MGP_C57BL6NJ_T0101047.1 MGP_C57BL6NJ_G0039093.1 mouse_genomes_project 11 72248711 72248855 - Gm25835 snoRNA snoRNA MGP_C57BL6NJ_T0012799.1 MGP_C57BL6NJ_G0010844.1 mouse_genomes_project 11 16449394 16451492 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006529.1 MGP_C57BL6NJ_G0005437.1 mouse_genomes_project 11 124104794 124107441 + Gm26730 lincRNA lincRNA MGP_C57BL6NJ_T0032135.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99026860 99084354 + Spag9 protein_coding processed_transcript MGP_C57BL6NJ_T0032136.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99026872 99091910 + Spag9 protein_coding processed_transcript MGP_C57BL6NJ_T0032137.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99026872 99169954 + MGP_C57BL6NJ_P0032137 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032138.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084295 99140187 + MGP_C57BL6NJ_P0032138 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032139.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084843 99151434 + MGP_C57BL6NJ_P0032139 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032140.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084915 99101810 + Spag9 protein_coding processed_transcript MGP_C57BL6NJ_T0032141.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084930 99169949 + MGP_C57BL6NJ_P0032141 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032142.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084930 99169949 + MGP_C57BL6NJ_P0032142 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032143.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99084993 99169954 + MGP_C57BL6NJ_P0032143 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032144.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99085090 99169952 + MGP_C57BL6NJ_P0032144 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0032145.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99112471 99136540 + Spag9 protein_coding processed_transcript MGP_C57BL6NJ_T0032146.1 MGP_C57BL6NJ_G0019342.1 mouse_genomes_project 11 99124907 99169954 + MGP_C57BL6NJ_P0032146 Spag9 protein_coding protein_coding MGP_C57BL6NJ_T0033684.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117042856 117124925 - MGP_C57BL6NJ_P0033684 Abca8a protein_coding protein_coding MGP_C57BL6NJ_T0033685.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117042858 117124884 - MGP_C57BL6NJ_P0033685 Abca8a protein_coding protein_coding MGP_C57BL6NJ_T0033686.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117043531 117126306 - MGP_C57BL6NJ_P0033686 Abca8a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033687.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117044070 117047304 - Abca8a protein_coding processed_transcript MGP_C57BL6NJ_T0033688.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117087266 117092356 - Abca8a protein_coding processed_transcript MGP_C57BL6NJ_T0033689.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117097722 117099307 - Abca8a protein_coding processed_transcript MGP_C57BL6NJ_T0033690.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117099240 117104612 - MGP_C57BL6NJ_P0033690 Abca8a protein_coding protein_coding MGP_C57BL6NJ_T0033691.1 MGP_C57BL6NJ_G0019733.1 mouse_genomes_project 11 117113118 117124884 - MGP_C57BL6NJ_P0033691 Abca8a protein_coding protein_coding MGP_C57BL6NJ_T0099742.1 MGP_C57BL6NJ_G0037788.1 mouse_genomes_project 11 22409464 22409609 - Gm23827 snRNA snRNA MGP_C57BL6NJ_T0029813.1 MGP_C57BL6NJ_G0018794.1 mouse_genomes_project 11 61297605 61298724 - MGP_C57BL6NJ_P0029813 Olfr222 protein_coding protein_coding MGP_C57BL6NJ_T0102400.1 MGP_C57BL6NJ_G0040326.1 mouse_genomes_project 11 2918496 2942573 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102401.1 MGP_C57BL6NJ_G0040326.1 mouse_genomes_project 11 2918517 2945407 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102402.1 MGP_C57BL6NJ_G0040326.1 mouse_genomes_project 11 2918517 2942937 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102403.1 MGP_C57BL6NJ_G0040326.1 mouse_genomes_project 11 2918584 2944634 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102404.1 MGP_C57BL6NJ_G0040326.1 mouse_genomes_project 11 2921690 2945125 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0033658.1 MGP_C57BL6NJ_G0019726.1 mouse_genomes_project 11 116436276 116461352 - MGP_C57BL6NJ_P0033658 Slc16a6 protein_coding protein_coding MGP_C57BL6NJ_T0033659.1 MGP_C57BL6NJ_G0019726.1 mouse_genomes_project 11 116438143 116461048 - MGP_C57BL6NJ_P0033659 Slc16a6 protein_coding protein_coding MGP_C57BL6NJ_T0033660.1 MGP_C57BL6NJ_G0019726.1 mouse_genomes_project 11 116446254 116458739 - MGP_C57BL6NJ_P0033660 Slc16a6 protein_coding protein_coding MGP_C57BL6NJ_T0033661.1 MGP_C57BL6NJ_G0019726.1 mouse_genomes_project 11 116452777 116460953 - Slc16a6 protein_coding processed_transcript MGP_C57BL6NJ_T0101082.1 MGP_C57BL6NJ_G0039128.1 mouse_genomes_project 11 110712790 110712923 - Gm22743 snoRNA snoRNA MGP_C57BL6NJ_T0006536.1 MGP_C57BL6NJ_G0005441.1 mouse_genomes_project 11 125371920 125372900 + Gm11729 lincRNA lincRNA MGP_C57BL6NJ_T0012884.1 MGP_C57BL6NJ_G0010929.1 mouse_genomes_project 11 45456559 45459017 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034208.1 MGP_C57BL6NJ_G0019836.1 mouse_genomes_project 11 124814855 124889076 + MGP_C57BL6NJ_P0034208 Mgat5b protein_coding protein_coding MGP_C57BL6NJ_T0034209.1 MGP_C57BL6NJ_G0019836.1 mouse_genomes_project 11 124849430 124876439 + Mgat5b protein_coding processed_transcript MGP_C57BL6NJ_T0034210.1 MGP_C57BL6NJ_G0019836.1 mouse_genomes_project 11 124868935 124880525 + MGP_C57BL6NJ_P0034210 Mgat5b protein_coding protein_coding MGP_C57BL6NJ_T0034211.1 MGP_C57BL6NJ_G0019836.1 mouse_genomes_project 11 124875204 124889068 + Mgat5b protein_coding retained_intron MGP_C57BL6NJ_T0006358.1 MGP_C57BL6NJ_G0005308.1 mouse_genomes_project 11 23429785 23439506 - Gm10466 lincRNA lincRNA MGP_C57BL6NJ_T0003490.1 MGP_C57BL6NJ_G0003205.1 mouse_genomes_project 11 123067100 123070421 - antisense antisense MGP_C57BL6NJ_T0031211.1 MGP_C57BL6NJ_G0019115.1 mouse_genomes_project 11 79030366 79138335 - MGP_C57BL6NJ_P0031211 Rph3al protein_coding protein_coding MGP_C57BL6NJ_T0031212.1 MGP_C57BL6NJ_G0019115.1 mouse_genomes_project 11 79031504 79111662 - MGP_C57BL6NJ_P0031212 Rph3al protein_coding protein_coding MGP_C57BL6NJ_T0031213.1 MGP_C57BL6NJ_G0019115.1 mouse_genomes_project 11 79098765 79126488 - MGP_C57BL6NJ_P0031213 Rph3al protein_coding protein_coding MGP_C57BL6NJ_T0031214.1 MGP_C57BL6NJ_G0019115.1 mouse_genomes_project 11 79099782 79138294 - MGP_C57BL6NJ_P0031214 Rph3al protein_coding protein_coding MGP_C57BL6NJ_T0031215.1 MGP_C57BL6NJ_G0019115.1 mouse_genomes_project 11 79105611 79139026 - MGP_C57BL6NJ_P0031215 Rph3al protein_coding protein_coding MGP_C57BL6NJ_T0032728.1 MGP_C57BL6NJ_G0019506.1 mouse_genomes_project 11 105604554 105605359 - MGP_C57BL6NJ_P0032728 protein_coding protein_coding MGP_C57BL6NJ_T0032732.1 MGP_C57BL6NJ_G0019510.1 mouse_genomes_project 11 105626303 105627718 - MGP_C57BL6NJ_P0032732 Gm11569 protein_coding protein_coding MGP_C57BL6NJ_T0012842.1 MGP_C57BL6NJ_G0010887.1 mouse_genomes_project 11 27943679 27944564 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030626.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72633629 72663909 + MGP_C57BL6NJ_P0030626 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030627.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72633785 72648923 + MGP_C57BL6NJ_P0030627 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030628.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72633819 72644696 + Dlg4 protein_coding processed_transcript MGP_C57BL6NJ_T0030629.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72635010 72663909 + MGP_C57BL6NJ_P0030629 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030630.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72635284 72663909 + MGP_C57BL6NJ_P0030630 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030631.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72635420 72648819 + MGP_C57BL6NJ_P0030631 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030632.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72641538 72648801 + MGP_C57BL6NJ_P0030632 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030633.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72644457 72648661 + MGP_C57BL6NJ_P0030633 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030634.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72647413 72656702 + MGP_C57BL6NJ_P0030634 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030635.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72647694 72648580 + MGP_C57BL6NJ_P0030635 Dlg4 protein_coding protein_coding MGP_C57BL6NJ_T0030636.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72648306 72649404 + Dlg4 protein_coding retained_intron MGP_C57BL6NJ_T0030637.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72657480 72662996 + MGP_C57BL6NJ_P0030637 Dlg4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030638.1 MGP_C57BL6NJ_G0018970.1 mouse_genomes_project 11 72662573 72663095 + Dlg4 protein_coding retained_intron MGP_C57BL6NJ_T0033355.1 MGP_C57BL6NJ_G0019658.1 mouse_genomes_project 11 110055627 110056637 + MGP_C57BL6NJ_P0033355 Rprml protein_coding protein_coding MGP_C57BL6NJ_T0000972.1 MGP_C57BL6NJ_G0000882.1 mouse_genomes_project 11 17053266 17056435 - TEC TEC MGP_C57BL6NJ_T0006389.1 MGP_C57BL6NJ_G0005333.1 mouse_genomes_project 11 44726855 44731768 + 4930597A21Rik lincRNA lincRNA MGP_C57BL6NJ_T0013081.1 MGP_C57BL6NJ_G0011126.1 mouse_genomes_project 11 123279244 123279781 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032538.1 MGP_C57BL6NJ_G0019442.1 mouse_genomes_project 11 103612351 103619684 + MGP_C57BL6NJ_P0032538 Rpl19 protein_coding protein_coding MGP_C57BL6NJ_T0032539.1 MGP_C57BL6NJ_G0019442.1 mouse_genomes_project 11 103612384 103614428 + Rpl19 protein_coding retained_intron MGP_C57BL6NJ_T0032540.1 MGP_C57BL6NJ_G0019442.1 mouse_genomes_project 11 103612413 103619674 + MGP_C57BL6NJ_P0032540 Rpl19 protein_coding protein_coding MGP_C57BL6NJ_T0028516.1 MGP_C57BL6NJ_G0018437.1 mouse_genomes_project 11 9036802 9064462 + protein_coding processed_transcript MGP_C57BL6NJ_T0028517.1 MGP_C57BL6NJ_G0018437.1 mouse_genomes_project 11 9038990 9097620 + MGP_C57BL6NJ_P0028517 protein_coding protein_coding MGP_C57BL6NJ_T0028518.1 MGP_C57BL6NJ_G0018437.1 mouse_genomes_project 11 9065190 9097618 + MGP_C57BL6NJ_P0028518 protein_coding protein_coding MGP_C57BL6NJ_T0003318.1 MGP_C57BL6NJ_G0003067.1 mouse_genomes_project 11 55967756 55972805 + Lyrm7os antisense antisense MGP_C57BL6NJ_T0003484.1 MGP_C57BL6NJ_G0003200.1 mouse_genomes_project 11 116418260 116419231 - Gm15642 antisense antisense MGP_C57BL6NJ_T0101030.1 MGP_C57BL6NJ_G0039076.1 mouse_genomes_project 11 45843540 45843672 + Gm22284 snoRNA snoRNA MGP_C57BL6NJ_T0012790.1 MGP_C57BL6NJ_G0010835.1 mouse_genomes_project 11 14158980 14159598 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006387.1 MGP_C57BL6NJ_G0005331.1 mouse_genomes_project 11 44048004 44233515 + Gm12153 lincRNA lincRNA MGP_C57BL6NJ_T0009916.1 MGP_C57BL6NJ_G0008001.1 mouse_genomes_project 11 83314550 83314616 + Mir193a miRNA miRNA MGP_C57BL6NJ_T0003325.1 MGP_C57BL6NJ_G0003073.1 mouse_genomes_project 11 59030076 59032488 - 4933426K07Rik antisense antisense MGP_C57BL6NJ_T0028415.1 MGP_C57BL6NJ_G0018409.1 mouse_genomes_project 11 3395091 3396706 + MGP_C57BL6NJ_P0028415 A730071L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0009973.1 MGP_C57BL6NJ_G0008058.1 mouse_genomes_project 11 128580050 128580114 - Mir6935 miRNA miRNA MGP_C57BL6NJ_T0006388.1 MGP_C57BL6NJ_G0005332.1 mouse_genomes_project 11 44370483 44373391 - lincRNA lincRNA MGP_C57BL6NJ_T0012982.1 MGP_C57BL6NJ_G0011027.1 mouse_genomes_project 11 81027099 81027279 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029043.1 MGP_C57BL6NJ_G0018563.1 mouse_genomes_project 11 42399333 42630744 + MGP_C57BL6NJ_P0029043 Gabrb2 protein_coding protein_coding MGP_C57BL6NJ_T0029044.1 MGP_C57BL6NJ_G0018563.1 mouse_genomes_project 11 42399340 42405483 + Gabrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0029045.1 MGP_C57BL6NJ_G0018563.1 mouse_genomes_project 11 42404123 42475742 + Gabrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0029046.1 MGP_C57BL6NJ_G0018563.1 mouse_genomes_project 11 42404154 42524699 + Gabrb2 protein_coding processed_transcript MGP_C57BL6NJ_T0029047.1 MGP_C57BL6NJ_G0018563.1 mouse_genomes_project 11 42404194 42628607 + MGP_C57BL6NJ_P0029047 Gabrb2 protein_coding protein_coding MGP_C57BL6NJ_T0028352.1 MGP_C57BL6NJ_G0018393.1 mouse_genomes_project 11 2377290 2555708 - MGP_C57BL6NJ_P0028352 Znrf3 protein_coding protein_coding MGP_C57BL6NJ_T0028353.1 MGP_C57BL6NJ_G0018393.1 mouse_genomes_project 11 2379647 2485314 - MGP_C57BL6NJ_P0028353 Znrf3 protein_coding protein_coding MGP_C57BL6NJ_T0034058.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123920336 123945804 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034059.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123920336 123925191 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034060.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123920336 123946177 - MGP_C57BL6NJ_P0034060 Fbf1 protein_coding protein_coding MGP_C57BL6NJ_T0034061.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123920337 123943938 - MGP_C57BL6NJ_P0034061 Fbf1 protein_coding protein_coding MGP_C57BL6NJ_T0034062.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123921293 123928819 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034063.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123932742 123935514 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034064.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123932773 123936917 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034065.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123933109 123946178 - MGP_C57BL6NJ_P0034065 Fbf1 protein_coding protein_coding MGP_C57BL6NJ_T0034066.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123934000 123943907 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034067.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123941352 123946190 - Fbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0034068.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123942703 123946172 - MGP_C57BL6NJ_P0034068 Fbf1 protein_coding protein_coding MGP_C57BL6NJ_T0034069.1 MGP_C57BL6NJ_G0019810.1 mouse_genomes_project 11 123943806 123945789 - Fbf1 protein_coding retained_intron MGP_C57BL6NJ_T0012942.1 MGP_C57BL6NJ_G0010987.1 mouse_genomes_project 11 63935880 63936265 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012806.1 MGP_C57BL6NJ_G0010851.1 mouse_genomes_project 11 18035026 18035858 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031551.1 MGP_C57BL6NJ_G0019192.1 mouse_genomes_project 11 83112371 83116400 - MGP_C57BL6NJ_P0031551 Evi2a protein_coding protein_coding MGP_C57BL6NJ_T0031552.1 MGP_C57BL6NJ_G0019192.1 mouse_genomes_project 11 83112379 83116421 - MGP_C57BL6NJ_P0031552 Evi2a protein_coding protein_coding MGP_C57BL6NJ_T0031553.1 MGP_C57BL6NJ_G0019192.1 mouse_genomes_project 11 83112768 83113587 - MGP_C57BL6NJ_P0031553 Evi2a protein_coding protein_coding MGP_C57BL6NJ_T0031554.1 MGP_C57BL6NJ_G0019192.1 mouse_genomes_project 11 83113496 83113958 - MGP_C57BL6NJ_P0031554 Evi2a protein_coding protein_coding MGP_C57BL6NJ_T0031555.1 MGP_C57BL6NJ_G0019192.1 mouse_genomes_project 11 83113879 83116421 - Evi2a protein_coding processed_transcript MGP_C57BL6NJ_T0029942.1 MGP_C57BL6NJ_G0018821.1 mouse_genomes_project 11 62764296 62775923 - MGP_C57BL6NJ_P0029942 Natd1 protein_coding protein_coding MGP_C57BL6NJ_T0029943.1 MGP_C57BL6NJ_G0018821.1 mouse_genomes_project 11 62768004 62776861 - Natd1 protein_coding processed_transcript MGP_C57BL6NJ_T0031603.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84032944 84055499 + MGP_C57BL6NJ_P0031603 Zfp207 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031604.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84032944 84045998 + MGP_C57BL6NJ_P0031604 Zfp207 protein_coding protein_coding MGP_C57BL6NJ_T0031605.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84032968 84046001 + MGP_C57BL6NJ_P0031605 Zfp207 protein_coding protein_coding MGP_C57BL6NJ_T0031606.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84032996 84044036 + MGP_C57BL6NJ_P0031606 Zfp207 protein_coding protein_coding MGP_C57BL6NJ_T0031607.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84033062 84045319 + MGP_C57BL6NJ_P0031607 Zfp207 protein_coding protein_coding MGP_C57BL6NJ_T0031608.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84035511 84041633 + MGP_C57BL6NJ_P0031608 Zfp207 protein_coding protein_coding MGP_C57BL6NJ_T0031609.1 MGP_C57BL6NJ_G0019204.1 mouse_genomes_project 11 84038878 84054587 + MGP_C57BL6NJ_P0031609 Zfp207 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031767.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87944282 88028162 + MGP_C57BL6NJ_P0031767 Synrg protein_coding protein_coding MGP_C57BL6NJ_T0031768.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87944282 88022998 + MGP_C57BL6NJ_P0031768 Synrg protein_coding protein_coding MGP_C57BL6NJ_T0031769.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87944330 88022972 + MGP_C57BL6NJ_P0031769 Synrg protein_coding protein_coding MGP_C57BL6NJ_T0031770.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87944330 88022972 + MGP_C57BL6NJ_P0031770 Synrg protein_coding protein_coding MGP_C57BL6NJ_T0031771.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87962286 87970661 + Synrg protein_coding processed_transcript MGP_C57BL6NJ_T0031772.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87963130 87971721 + MGP_C57BL6NJ_P0031772 Synrg protein_coding protein_coding MGP_C57BL6NJ_T0031773.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 87970660 87972137 + Synrg protein_coding retained_intron MGP_C57BL6NJ_T0031774.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 88000933 88023455 + Synrg protein_coding retained_intron MGP_C57BL6NJ_T0031775.1 MGP_C57BL6NJ_G0019256.1 mouse_genomes_project 11 88008746 88022054 + Synrg protein_coding retained_intron MGP_C57BL6NJ_T0030716.1 MGP_C57BL6NJ_G0018988.1 mouse_genomes_project 11 73133597 73134520 + MGP_C57BL6NJ_P0030716 Zmynd15 protein_coding protein_coding MGP_C57BL6NJ_T0030717.1 MGP_C57BL6NJ_G0018988.1 mouse_genomes_project 11 73133794 73134554 + MGP_C57BL6NJ_P0030717 Zmynd15 protein_coding protein_coding MGP_C57BL6NJ_T0030718.1 MGP_C57BL6NJ_G0018988.1 mouse_genomes_project 11 73133853 73139857 + Zmynd15 protein_coding retained_intron MGP_C57BL6NJ_T0030719.1 MGP_C57BL6NJ_G0018988.1 mouse_genomes_project 11 73134222 73139748 + MGP_C57BL6NJ_P0030719 Zmynd15 protein_coding protein_coding MGP_C57BL6NJ_T0030720.1 MGP_C57BL6NJ_G0018988.1 mouse_genomes_project 11 73134227 73139744 + MGP_C57BL6NJ_P0030720 Zmynd15 protein_coding protein_coding MGP_C57BL6NJ_T0012781.1 MGP_C57BL6NJ_G0010826.1 mouse_genomes_project 11 10617808 10618913 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033511.1 MGP_C57BL6NJ_G0019698.1 mouse_genomes_project 11 113010432 113022655 + MGP_C57BL6NJ_P0033511 Prr29 protein_coding protein_coding MGP_C57BL6NJ_T0033512.1 MGP_C57BL6NJ_G0019698.1 mouse_genomes_project 11 113020385 113023099 + MGP_C57BL6NJ_P0033512 Prr29 protein_coding protein_coding MGP_C57BL6NJ_T0033513.1 MGP_C57BL6NJ_G0019698.1 mouse_genomes_project 11 113020385 113022889 + MGP_C57BL6NJ_P0033513 Prr29 protein_coding protein_coding MGP_C57BL6NJ_T0033514.1 MGP_C57BL6NJ_G0019698.1 mouse_genomes_project 11 113020398 113022462 + MGP_C57BL6NJ_P0033514 Prr29 protein_coding protein_coding MGP_C57BL6NJ_T0030240.1 MGP_C57BL6NJ_G0018886.1 mouse_genomes_project 11 70166774 70186860 + MGP_C57BL6NJ_P0030240 Gsg1l2 protein_coding protein_coding MGP_C57BL6NJ_T0030241.1 MGP_C57BL6NJ_G0018886.1 mouse_genomes_project 11 70173109 70182290 + MGP_C57BL6NJ_P0030241 Gsg1l2 protein_coding protein_coding MGP_C57BL6NJ_T0028985.1 MGP_C57BL6NJ_G0018549.1 mouse_genomes_project 11 34205508 34231682 - MGP_C57BL6NJ_P0028985 Spdl1 protein_coding protein_coding MGP_C57BL6NJ_T0028986.1 MGP_C57BL6NJ_G0018549.1 mouse_genomes_project 11 34218785 34220692 - Spdl1 protein_coding retained_intron MGP_C57BL6NJ_T0028987.1 MGP_C57BL6NJ_G0018549.1 mouse_genomes_project 11 34228378 34231633 - Spdl1 protein_coding retained_intron MGP_C57BL6NJ_T0017682.1 MGP_C57BL6NJ_G0015580.1 mouse_genomes_project 11 78992004 79023253 + Gm12339 processed_transcript antisense MGP_C57BL6NJ_T0017683.1 MGP_C57BL6NJ_G0015580.1 mouse_genomes_project 11 78992456 79023271 + Gm12339 processed_transcript processed_transcript MGP_C57BL6NJ_T0032821.1 MGP_C57BL6NJ_G0019551.1 mouse_genomes_project 11 106554388 106561213 + MGP_C57BL6NJ_P0032821 Cnp protein_coding protein_coding MGP_C57BL6NJ_T0032822.1 MGP_C57BL6NJ_G0019551.1 mouse_genomes_project 11 106554596 106555935 + Cnp protein_coding processed_transcript MGP_C57BL6NJ_T0032823.1 MGP_C57BL6NJ_G0019551.1 mouse_genomes_project 11 106555008 106561213 + Cnp protein_coding processed_transcript MGP_C57BL6NJ_T0032824.1 MGP_C57BL6NJ_G0019551.1 mouse_genomes_project 11 106555375 106572356 + Cnp protein_coding processed_transcript MGP_C57BL6NJ_T0006544.1 MGP_C57BL6NJ_G0005449.1 mouse_genomes_project 11 128131505 128135069 + Gm11766 lincRNA lincRNA MGP_C57BL6NJ_T0032757.1 MGP_C57BL6NJ_G0019532.1 mouse_genomes_project 11 106033296 106037536 - MGP_C57BL6NJ_P0032757 Krt13 protein_coding protein_coding MGP_C57BL6NJ_T0032758.1 MGP_C57BL6NJ_G0019532.1 mouse_genomes_project 11 106033870 106034804 - Krt13 protein_coding retained_intron MGP_C57BL6NJ_T0032759.1 MGP_C57BL6NJ_G0019532.1 mouse_genomes_project 11 106035114 106036547 - Krt13 protein_coding processed_transcript MGP_C57BL6NJ_T0031956.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91896980 91915740 + MGP_C57BL6NJ_P0031956 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031957.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906489 91921606 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031958.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906524 91922959 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031959.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906533 91916530 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031960.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906547 91922959 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031961.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906561 91916358 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031962.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91906612 91922965 + MGP_C57BL6NJ_P0031962 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031963.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91907005 91921694 + MGP_C57BL6NJ_P0031963 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031964.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91910398 91922959 + MGP_C57BL6NJ_P0031964 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031965.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91910418 91922795 + MGP_C57BL6NJ_P0031965 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031966.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91910426 91916530 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031967.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91910431 91922959 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031968.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91911566 91921461 + MGP_C57BL6NJ_P0031968 Sept4 protein_coding protein_coding MGP_C57BL6NJ_T0031969.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91915723 91922284 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031970.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91921287 91922414 + Sept4 protein_coding retained_intron MGP_C57BL6NJ_T0031971.1 MGP_C57BL6NJ_G0019298.1 mouse_genomes_project 11 91921896 91922959 + Sept4 protein_coding processed_transcript MGP_C57BL6NJ_T0032172.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032172 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032173.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032173 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032174.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032174 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032175.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032175 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032176.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032176 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032177.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032177 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032178.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032178 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032179.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032179 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032180.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504428 99577157 - MGP_C57BL6NJ_P0032180 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032181.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504443 99577228 - MGP_C57BL6NJ_P0032181 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032182.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99504673 99577157 - MGP_C57BL6NJ_P0032182 Cacna1g protein_coding protein_coding MGP_C57BL6NJ_T0032183.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99505891 99507717 - Cacna1g protein_coding processed_transcript MGP_C57BL6NJ_T0032184.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99507518 99513225 - Cacna1g protein_coding processed_transcript MGP_C57BL6NJ_T0032185.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99514850 99520347 - Cacna1g protein_coding processed_transcript MGP_C57BL6NJ_T0032186.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99521110 99522333 - Cacna1g protein_coding processed_transcript MGP_C57BL6NJ_T0032187.1 MGP_C57BL6NJ_G0019349.1 mouse_genomes_project 11 99522822 99576698 - Cacna1g protein_coding processed_transcript MGP_C57BL6NJ_T0031023.1 MGP_C57BL6NJ_G0019058.1 mouse_genomes_project 11 76452512 76458717 - MGP_C57BL6NJ_P0031023 Olfr381 protein_coding protein_coding MGP_C57BL6NJ_T0031024.1 MGP_C57BL6NJ_G0019058.1 mouse_genomes_project 11 76452512 76454062 - MGP_C57BL6NJ_P0031024 Olfr381 protein_coding protein_coding MGP_C57BL6NJ_T0099780.1 MGP_C57BL6NJ_G0037826.1 mouse_genomes_project 11 90655302 90655408 - Gm26439 snRNA snRNA MGP_C57BL6NJ_T0033899.1 MGP_C57BL6NJ_G0019784.1 mouse_genomes_project 11 123168542 123188505 - MGP_C57BL6NJ_P0033899 Hn1 protein_coding protein_coding MGP_C57BL6NJ_T0033900.1 MGP_C57BL6NJ_G0019784.1 mouse_genomes_project 11 123168825 123188266 - Hn1 protein_coding processed_transcript MGP_C57BL6NJ_T0033901.1 MGP_C57BL6NJ_G0019784.1 mouse_genomes_project 11 123168924 123188466 - Hn1 protein_coding processed_transcript MGP_C57BL6NJ_T0033902.1 MGP_C57BL6NJ_G0019784.1 mouse_genomes_project 11 123171175 123188489 - Hn1 protein_coding processed_transcript MGP_C57BL6NJ_T0033903.1 MGP_C57BL6NJ_G0019784.1 mouse_genomes_project 11 123173798 123188234 - Hn1 protein_coding processed_transcript MGP_C57BL6NJ_T0012935.1 MGP_C57BL6NJ_G0010980.1 mouse_genomes_project 11 62472064 62476347 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009903.1 MGP_C57BL6NJ_G0007988.1 mouse_genomes_project 11 75834592 75834682 + Gm44467 miRNA miRNA MGP_C57BL6NJ_T0030275.1 MGP_C57BL6NJ_G0018895.1 mouse_genomes_project 11 71038817 71050328 + MGP_C57BL6NJ_P0030275 Ccdc42 protein_coding protein_coding MGP_C57BL6NJ_T0030276.1 MGP_C57BL6NJ_G0018895.1 mouse_genomes_project 11 71038929 71050307 + MGP_C57BL6NJ_P0030276 Ccdc42 protein_coding protein_coding MGP_C57BL6NJ_T0030277.1 MGP_C57BL6NJ_G0018895.1 mouse_genomes_project 11 71045823 71050316 + MGP_C57BL6NJ_P0030277 Ccdc42 protein_coding protein_coding MGP_C57BL6NJ_T0030370.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71644981 71669261 + MGP_C57BL6NJ_P0030370 Aloxe3 protein_coding protein_coding MGP_C57BL6NJ_T0030371.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71645300 71655637 + Aloxe3 protein_coding retained_intron MGP_C57BL6NJ_T0030372.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71645488 71653603 + MGP_C57BL6NJ_P0030372 Aloxe3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030373.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71653220 71654185 + Aloxe3 protein_coding retained_intron MGP_C57BL6NJ_T0030374.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71653395 71662980 + Aloxe3 protein_coding retained_intron MGP_C57BL6NJ_T0030375.1 MGP_C57BL6NJ_G0018913.1 mouse_genomes_project 11 71655668 71663058 + Aloxe3 protein_coding retained_intron MGP_C57BL6NJ_T0034049.1 MGP_C57BL6NJ_G0019808.1 mouse_genomes_project 11 123893787 123907677 - MGP_C57BL6NJ_P0034049 Trim65 protein_coding protein_coding MGP_C57BL6NJ_T0034050.1 MGP_C57BL6NJ_G0019808.1 mouse_genomes_project 11 123901358 123907681 - Trim65 protein_coding processed_transcript MGP_C57BL6NJ_T0034051.1 MGP_C57BL6NJ_G0019808.1 mouse_genomes_project 11 123901358 123907679 - MGP_C57BL6NJ_P0034051 Trim65 protein_coding protein_coding MGP_C57BL6NJ_T0012996.1 MGP_C57BL6NJ_G0011041.1 mouse_genomes_project 11 85292073 85292892 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032809.1 MGP_C57BL6NJ_G0019548.1 mouse_genomes_project 11 106434847 106444971 - MGP_C57BL6NJ_P0032809 Klhl11 protein_coding protein_coding MGP_C57BL6NJ_T0033442.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112201299 112395884 + MGP_C57BL6NJ_P0033442 Tanc2 protein_coding protein_coding MGP_C57BL6NJ_T0033443.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112201304 112548533 + MGP_C57BL6NJ_P0033443 Tanc2 protein_coding protein_coding MGP_C57BL6NJ_T0033444.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112237553 112331456 + Tanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0033445.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112324254 112325544 + MGP_C57BL6NJ_P0033445 Tanc2 protein_coding protein_coding MGP_C57BL6NJ_T0033446.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112394370 112542949 + MGP_C57BL6NJ_P0033446 Tanc2 protein_coding protein_coding MGP_C57BL6NJ_T0033447.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112513905 112543348 + MGP_C57BL6NJ_P0033447 Tanc2 protein_coding protein_coding MGP_C57BL6NJ_T0033448.1 MGP_C57BL6NJ_G0019678.1 mouse_genomes_project 11 112521347 112535391 + Tanc2 protein_coding processed_transcript MGP_C57BL6NJ_T0031049.1 MGP_C57BL6NJ_G0019074.1 mouse_genomes_project 11 77056905 77057908 - MGP_C57BL6NJ_P0031049 Olfr399 protein_coding protein_coding MGP_C57BL6NJ_T0003379.1 MGP_C57BL6NJ_G0003117.1 mouse_genomes_project 11 81464356 81467010 - Dhrs13os antisense antisense MGP_C57BL6NJ_T0099787.1 MGP_C57BL6NJ_G0037833.1 mouse_genomes_project 11 93652872 93652976 - Gm22534 snRNA snRNA MGP_C57BL6NJ_T0031466.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81791796 81796606 + MGP_C57BL6NJ_P0031466 Aldoc protein_coding protein_coding MGP_C57BL6NJ_T0031467.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81791996 81793522 + Aldoc protein_coding retained_intron MGP_C57BL6NJ_T0031468.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81793024 81795585 + MGP_C57BL6NJ_P0031468 Aldoc protein_coding protein_coding MGP_C57BL6NJ_T0031469.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81793150 81794943 + Aldoc protein_coding processed_transcript MGP_C57BL6NJ_T0031470.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81793889 81794386 + Aldoc protein_coding processed_transcript MGP_C57BL6NJ_T0031471.1 MGP_C57BL6NJ_G0019166.1 mouse_genomes_project 11 81794153 81795533 + Aldoc protein_coding processed_transcript MGP_C57BL6NJ_T0102746.1 MGP_C57BL6NJ_G0040541.1 mouse_genomes_project 11 76724568 76725127 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030920.1 MGP_C57BL6NJ_G0019028.1 mouse_genomes_project 11 75176406 75194811 - MGP_C57BL6NJ_P0030920 Tekt1 protein_coding protein_coding MGP_C57BL6NJ_T0030921.1 MGP_C57BL6NJ_G0019028.1 mouse_genomes_project 11 75176406 75194234 - MGP_C57BL6NJ_P0030921 Tekt1 protein_coding protein_coding MGP_C57BL6NJ_T0030922.1 MGP_C57BL6NJ_G0019028.1 mouse_genomes_project 11 75176413 75195380 - MGP_C57BL6NJ_P0030922 Tekt1 protein_coding protein_coding MGP_C57BL6NJ_T0009956.1 MGP_C57BL6NJ_G0008041.1 mouse_genomes_project 11 113671323 113671427 - Gm27322 miRNA miRNA MGP_C57BL6NJ_T0017725.1 MGP_C57BL6NJ_G0015605.1 mouse_genomes_project 11 110136001 110136584 + Gm11642 processed_transcript processed_transcript MGP_C57BL6NJ_T0012885.1 MGP_C57BL6NJ_G0010930.1 mouse_genomes_project 11 46021995 46022384 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033855.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064266 123074781 + MGP_C57BL6NJ_P0033855 Ict1 protein_coding protein_coding MGP_C57BL6NJ_T0033856.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064268 123074769 + MGP_C57BL6NJ_P0033856 Ict1 protein_coding protein_coding MGP_C57BL6NJ_T0033857.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064271 123073026 + MGP_C57BL6NJ_P0033857 Ict1 protein_coding protein_coding MGP_C57BL6NJ_T0033858.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064281 123072160 + Ict1 protein_coding retained_intron MGP_C57BL6NJ_T0033859.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064285 123072368 + MGP_C57BL6NJ_P0033859 Ict1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033860.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064291 123072866 + Ict1 protein_coding processed_transcript MGP_C57BL6NJ_T0033861.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064296 123072358 + Ict1 protein_coding retained_intron MGP_C57BL6NJ_T0033862.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123064336 123072831 + Ict1 protein_coding processed_transcript MGP_C57BL6NJ_T0033863.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123071967 123072826 + Ict1 protein_coding retained_intron MGP_C57BL6NJ_T0033864.1 MGP_C57BL6NJ_G0019777.1 mouse_genomes_project 11 123072266 123073015 + Ict1 protein_coding retained_intron MGP_C57BL6NJ_T0033583.1 MGP_C57BL6NJ_G0019710.1 mouse_genomes_project 11 113956710 113980803 - MGP_C57BL6NJ_P0033583 Nol11 protein_coding protein_coding MGP_C57BL6NJ_T0033584.1 MGP_C57BL6NJ_G0019710.1 mouse_genomes_project 11 113956710 113980803 - MGP_C57BL6NJ_P0033584 Nol11 protein_coding protein_coding MGP_C57BL6NJ_T0033585.1 MGP_C57BL6NJ_G0019710.1 mouse_genomes_project 11 113957407 113958481 - Nol11 protein_coding processed_transcript MGP_C57BL6NJ_T0033586.1 MGP_C57BL6NJ_G0019710.1 mouse_genomes_project 11 113968642 113976243 - Nol11 protein_coding processed_transcript MGP_C57BL6NJ_T0033587.1 MGP_C57BL6NJ_G0019710.1 mouse_genomes_project 11 113977961 113980774 - Nol11 protein_coding processed_transcript MGP_C57BL6NJ_T0012067.1 MGP_C57BL6NJ_G0010149.1 mouse_genomes_project 11 77354557 77355528 + MGP_C57BL6NJ_P0012067 Olfr409-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0028993.1 MGP_C57BL6NJ_G0018551.1 mouse_genomes_project 11 35219834 35241650 + MGP_C57BL6NJ_P0028993 Pank3 protein_coding protein_coding MGP_C57BL6NJ_T0029727.1 MGP_C57BL6NJ_G0018757.1 mouse_genomes_project 11 60174946 60186858 + MGP_C57BL6NJ_P0029727 Trim58 protein_coding protein_coding MGP_C57BL6NJ_T0011561.1 MGP_C57BL6NJ_G0009646.1 mouse_genomes_project 11 61863155 61863282 + Gm27511 misc_RNA misc_RNA MGP_C57BL6NJ_T0030063.1 MGP_C57BL6NJ_G0018842.1 mouse_genomes_project 11 64231555 64252267 + MGP_C57BL6NJ_P0030063 Adora2b protein_coding protein_coding MGP_C57BL6NJ_T0028421.1 MGP_C57BL6NJ_G0018412.1 mouse_genomes_project 11 3473125 3477627 - MGP_C57BL6NJ_P0028421 Tmed4 protein_coding protein_coding MGP_C57BL6NJ_T0028422.1 MGP_C57BL6NJ_G0018412.1 mouse_genomes_project 11 3474417 3477627 - Tmed4 protein_coding retained_intron MGP_C57BL6NJ_T0028423.1 MGP_C57BL6NJ_G0018412.1 mouse_genomes_project 11 3476497 3477622 - MGP_C57BL6NJ_P0028423 Tmed4 protein_coding protein_coding MGP_C57BL6NJ_T0032495.1 MGP_C57BL6NJ_G0019433.1 mouse_genomes_project 11 103298448 103304138 - Cwc25 protein_coding processed_transcript MGP_C57BL6NJ_T0032496.1 MGP_C57BL6NJ_G0019433.1 mouse_genomes_project 11 103298582 103324990 - MGP_C57BL6NJ_P0032496 Cwc25 protein_coding protein_coding MGP_C57BL6NJ_T0032497.1 MGP_C57BL6NJ_G0019433.1 mouse_genomes_project 11 103300635 103305369 - MGP_C57BL6NJ_P0032497 Cwc25 protein_coding protein_coding MGP_C57BL6NJ_T0032498.1 MGP_C57BL6NJ_G0019433.1 mouse_genomes_project 11 103314694 103324974 - MGP_C57BL6NJ_P0032498 Cwc25 protein_coding protein_coding MGP_C57BL6NJ_T0003432.1 MGP_C57BL6NJ_G0003158.1 mouse_genomes_project 11 103274400 103276461 + Gm11614 antisense antisense MGP_C57BL6NJ_T0028482.1 MGP_C57BL6NJ_G0018426.1 mouse_genomes_project 11 4483211 4487928 + MGP_C57BL6NJ_P0028482 Igfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0033126.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108423023 108459169 - MGP_C57BL6NJ_P0033126 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033127.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424335 108459127 - MGP_C57BL6NJ_P0033127 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033128.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424338 108425777 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033129.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424340 108426460 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033130.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424340 108447932 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033131.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424340 108425150 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033132.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424340 108459142 - MGP_C57BL6NJ_P0033132 Hdac5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033133.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424340 108425160 - MGP_C57BL6NJ_P0033133 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033134.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424342 108459169 - MGP_C57BL6NJ_P0033134 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033135.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424342 108459139 - MGP_C57BL6NJ_P0033135 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033136.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108424828 108426671 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033137.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108425272 108427487 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033138.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108427270 108428085 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033139.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108427555 108428949 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033140.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108427981 108429408 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033141.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108434478 108459145 - MGP_C57BL6NJ_P0033141 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033142.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108435219 108447931 - MGP_C57BL6NJ_P0033142 Hdac5 protein_coding protein_coding MGP_C57BL6NJ_T0033143.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108435622 108447932 - Hdac5 protein_coding retained_intron MGP_C57BL6NJ_T0033144.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108447713 108459136 - Hdac5 protein_coding processed_transcript MGP_C57BL6NJ_T0033145.1 MGP_C57BL6NJ_G0019617.1 mouse_genomes_project 11 108448155 108459149 - Hdac5 protein_coding processed_transcript MGP_C57BL6NJ_T0029925.1 MGP_C57BL6NJ_G0018817.1 mouse_genomes_project 11 62618176 62621720 + MGP_C57BL6NJ_P0029925 Smcr8 protein_coding protein_coding MGP_C57BL6NJ_T0029926.1 MGP_C57BL6NJ_G0018817.1 mouse_genomes_project 11 62618177 62629976 + MGP_C57BL6NJ_P0029926 Smcr8 protein_coding protein_coding MGP_C57BL6NJ_T0031736.1 MGP_C57BL6NJ_G0019242.1 mouse_genomes_project 11 87394327 87415852 + Taf15 protein_coding processed_transcript MGP_C57BL6NJ_T0031737.1 MGP_C57BL6NJ_G0019242.1 mouse_genomes_project 11 87394333 87432947 + MGP_C57BL6NJ_P0031737 Taf15 protein_coding protein_coding MGP_C57BL6NJ_T0031738.1 MGP_C57BL6NJ_G0019242.1 mouse_genomes_project 11 87394352 87408402 + Taf15 protein_coding retained_intron MGP_C57BL6NJ_T0031739.1 MGP_C57BL6NJ_G0019242.1 mouse_genomes_project 11 87394356 87415684 + Taf15 protein_coding processed_transcript MGP_C57BL6NJ_T0031740.1 MGP_C57BL6NJ_G0019242.1 mouse_genomes_project 11 87415665 87432947 + MGP_C57BL6NJ_P0031740 Taf15 protein_coding protein_coding MGP_C57BL6NJ_T0013020.1 MGP_C57BL6NJ_G0011065.1 mouse_genomes_project 11 97736502 97738691 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032352.1 MGP_C57BL6NJ_G0019400.1 mouse_genomes_project 11 101717462 101741975 + MGP_C57BL6NJ_P0032352 Hoxb3 protein_coding protein_coding MGP_C57BL6NJ_T0032353.1 MGP_C57BL6NJ_G0019400.1 mouse_genomes_project 11 101722198 101738320 + MGP_C57BL6NJ_P0032353 Hoxb3 protein_coding protein_coding MGP_C57BL6NJ_T0032354.1 MGP_C57BL6NJ_G0019400.1 mouse_genomes_project 11 101734993 101735791 + Hoxb3 protein_coding processed_transcript MGP_C57BL6NJ_T0032355.1 MGP_C57BL6NJ_G0019400.1 mouse_genomes_project 11 101737785 101740552 + MGP_C57BL6NJ_P0032355 Hoxb3 protein_coding protein_coding MGP_C57BL6NJ_T0028364.1 MGP_C57BL6NJ_G0018397.1 mouse_genomes_project 11 2848761 2852448 - MGP_C57BL6NJ_P0028364 Mrps24 protein_coding protein_coding MGP_C57BL6NJ_T0028365.1 MGP_C57BL6NJ_G0018397.1 mouse_genomes_project 11 2849104 2852428 - Mrps24 protein_coding retained_intron MGP_C57BL6NJ_T0028366.1 MGP_C57BL6NJ_G0018397.1 mouse_genomes_project 11 2849301 2860400 - Mrps24 protein_coding processed_transcript MGP_C57BL6NJ_T0028367.1 MGP_C57BL6NJ_G0018397.1 mouse_genomes_project 11 2849333 2852451 - Mrps24 protein_coding retained_intron MGP_C57BL6NJ_T0028368.1 MGP_C57BL6NJ_G0018397.1 mouse_genomes_project 11 2849438 2852403 - Mrps24 protein_coding retained_intron MGP_C57BL6NJ_T0031058.1 MGP_C57BL6NJ_G0019079.1 mouse_genomes_project 11 77266779 77268304 - MGP_C57BL6NJ_P0031058 protein_coding protein_coding MGP_C57BL6NJ_T0099789.1 MGP_C57BL6NJ_G0037835.1 mouse_genomes_project 11 100161917 100162042 + Gm22456 snRNA snRNA MGP_C57BL6NJ_T0034140.1 MGP_C57BL6NJ_G0019823.1 mouse_genomes_project 11 124354174 124360452 - Ube2o protein_coding processed_transcript MGP_C57BL6NJ_T0034141.1 MGP_C57BL6NJ_G0019823.1 mouse_genomes_project 11 124354174 124399434 - MGP_C57BL6NJ_P0034141 Ube2o protein_coding protein_coding MGP_C57BL6NJ_T0034142.1 MGP_C57BL6NJ_G0019823.1 mouse_genomes_project 11 124362185 124365276 - Ube2o protein_coding processed_transcript MGP_C57BL6NJ_T0032611.1 MGP_C57BL6NJ_G0019460.1 mouse_genomes_project 11 104342254 104355533 + MGP_C57BL6NJ_P0032611 Gsdma protein_coding protein_coding MGP_C57BL6NJ_T0029416.1 MGP_C57BL6NJ_G0018667.1 mouse_genomes_project 11 52621159 52657492 - MGP_C57BL6NJ_P0029416 Jade2 protein_coding protein_coding MGP_C57BL6NJ_T0029417.1 MGP_C57BL6NJ_G0018667.1 mouse_genomes_project 11 52650743 52665509 - Jade2 protein_coding processed_transcript MGP_C57BL6NJ_T0003334.1 MGP_C57BL6NJ_G0003081.1 mouse_genomes_project 11 61703309 61704563 - Med9os antisense antisense MGP_C57BL6NJ_T0003335.1 MGP_C57BL6NJ_G0003081.1 mouse_genomes_project 11 61703309 61704512 - Med9os antisense antisense MGP_C57BL6NJ_T0003336.1 MGP_C57BL6NJ_G0003081.1 mouse_genomes_project 11 61703309 61704562 - Med9os antisense antisense MGP_C57BL6NJ_T0099545.1 MGP_C57BL6NJ_G0037595.1 mouse_genomes_project 11 103896178 103898153 + Gm20644 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0032736.1 MGP_C57BL6NJ_G0019514.1 mouse_genomes_project 11 105689891 105690959 - MGP_C57BL6NJ_P0032736 Krtap4-16 protein_coding protein_coding MGP_C57BL6NJ_T0031059.1 MGP_C57BL6NJ_G0019080.1 mouse_genomes_project 11 77293371 77299477 + MGP_C57BL6NJ_P0031059 Olfr59 protein_coding protein_coding MGP_C57BL6NJ_T0031060.1 MGP_C57BL6NJ_G0019080.1 mouse_genomes_project 11 77293386 77300338 + MGP_C57BL6NJ_P0031060 Olfr59 protein_coding protein_coding MGP_C57BL6NJ_T0031061.1 MGP_C57BL6NJ_G0019080.1 mouse_genomes_project 11 77293410 77299476 + MGP_C57BL6NJ_P0031061 Olfr59 protein_coding protein_coding MGP_C57BL6NJ_T0031062.1 MGP_C57BL6NJ_G0019080.1 mouse_genomes_project 11 77294560 77299641 + MGP_C57BL6NJ_P0031062 Olfr59 protein_coding protein_coding MGP_C57BL6NJ_T0028903.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31428432 31479274 - MGP_C57BL6NJ_P0028903 Nprl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028908.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31434067 31465900 - Nprl3 protein_coding processed_transcript MGP_C57BL6NJ_T0028909.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31434067 31479274 - MGP_C57BL6NJ_P0028909 Nprl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028910.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31434767 31479292 - MGP_C57BL6NJ_P0028910 Nprl3 protein_coding protein_coding MGP_C57BL6NJ_T0028911.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31434858 31479243 - MGP_C57BL6NJ_P0028911 Nprl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028912.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31435739 31443914 - Nprl3 protein_coding retained_intron MGP_C57BL6NJ_T0028913.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31435747 31479214 - MGP_C57BL6NJ_P0028913 Nprl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028914.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31435755 31479132 - MGP_C57BL6NJ_P0028914 Nprl3 protein_coding protein_coding MGP_C57BL6NJ_T0028915.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31446359 31449454 - Nprl3 protein_coding retained_intron MGP_C57BL6NJ_T0028916.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31446405 31447549 - Nprl3 protein_coding retained_intron MGP_C57BL6NJ_T0028917.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31449312 31463546 - Nprl3 protein_coding retained_intron MGP_C57BL6NJ_T0028918.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31449375 31479243 - MGP_C57BL6NJ_P0028918 Nprl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028919.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31451173 31459665 - Nprl3 protein_coding processed_transcript MGP_C57BL6NJ_T0028920.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31457265 31459765 - Nprl3 protein_coding processed_transcript MGP_C57BL6NJ_T0028921.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31459649 31479200 - MGP_C57BL6NJ_P0028921 Nprl3 protein_coding protein_coding MGP_C57BL6NJ_T0028922.1 MGP_C57BL6NJ_G0018523.1 mouse_genomes_project 11 31474179 31479136 - Nprl3 protein_coding processed_transcript MGP_C57BL6NJ_T0030314.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474879 71477718 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030315.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474879 71475408 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030316.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474879 71476322 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030317.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474879 71476376 - MGP_C57BL6NJ_P0030317 Rangrf protein_coding protein_coding MGP_C57BL6NJ_T0030318.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474882 71475739 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030319.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474883 71475841 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030320.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474890 71475764 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0030321.1 MGP_C57BL6NJ_G0018903.1 mouse_genomes_project 11 71474893 71475592 - Rangrf protein_coding processed_transcript MGP_C57BL6NJ_T0101025.1 MGP_C57BL6NJ_G0039071.1 mouse_genomes_project 11 25918631 25918750 - Gm24850 snoRNA snoRNA MGP_C57BL6NJ_T0030914.1 MGP_C57BL6NJ_G0019026.1 mouse_genomes_project 11 75129863 75137299 + MGP_C57BL6NJ_P0030914 Xaf1 protein_coding protein_coding MGP_C57BL6NJ_T0030915.1 MGP_C57BL6NJ_G0019026.1 mouse_genomes_project 11 75129864 75144225 + MGP_C57BL6NJ_P0030915 Xaf1 protein_coding protein_coding MGP_C57BL6NJ_T0030916.1 MGP_C57BL6NJ_G0019026.1 mouse_genomes_project 11 75129873 75140319 + MGP_C57BL6NJ_P0030916 Xaf1 protein_coding protein_coding MGP_C57BL6NJ_T0030917.1 MGP_C57BL6NJ_G0019026.1 mouse_genomes_project 11 75129897 75136987 + MGP_C57BL6NJ_P0030917 Xaf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030918.1 MGP_C57BL6NJ_G0019026.1 mouse_genomes_project 11 75129899 75137006 + Xaf1 protein_coding retained_intron MGP_C57BL6NJ_T0031166.1 MGP_C57BL6NJ_G0019107.1 mouse_genomes_project 11 78678838 78691952 + MGP_C57BL6NJ_P0031166 Scarf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031167.1 MGP_C57BL6NJ_G0019107.1 mouse_genomes_project 11 78678841 78691954 + MGP_C57BL6NJ_P0031167 Scarf1 protein_coding protein_coding MGP_C57BL6NJ_T0031517.1 MGP_C57BL6NJ_G0019182.1 mouse_genomes_project 11 82336806 82359221 + MGP_C57BL6NJ_P0031517 Lyrm9 protein_coding protein_coding MGP_C57BL6NJ_T0031518.1 MGP_C57BL6NJ_G0019182.1 mouse_genomes_project 11 82336826 82350799 + MGP_C57BL6NJ_P0031518 Lyrm9 protein_coding protein_coding MGP_C57BL6NJ_T0031519.1 MGP_C57BL6NJ_G0019182.1 mouse_genomes_project 11 82336851 82351818 + Lyrm9 protein_coding processed_transcript MGP_C57BL6NJ_T0031482.1 MGP_C57BL6NJ_G0019171.1 mouse_genomes_project 11 81950027 81956276 + MGP_C57BL6NJ_P0031482 Slc46a1 protein_coding protein_coding MGP_C57BL6NJ_T0031483.1 MGP_C57BL6NJ_G0019171.1 mouse_genomes_project 11 81950080 81955953 + MGP_C57BL6NJ_P0031483 Slc46a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031484.1 MGP_C57BL6NJ_G0019171.1 mouse_genomes_project 11 81954556 81956390 + Slc46a1 protein_coding retained_intron MGP_C57BL6NJ_T0017621.1 MGP_C57BL6NJ_G0015546.1 mouse_genomes_project 11 9229500 9276089 - Gm11999 processed_transcript processed_transcript MGP_C57BL6NJ_T0012857.1 MGP_C57BL6NJ_G0010902.1 mouse_genomes_project 11 30083269 30083873 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031548.1 MGP_C57BL6NJ_G0019190.1 mouse_genomes_project 11 83099268 83116401 - MGP_C57BL6NJ_P0031548 protein_coding protein_coding MGP_C57BL6NJ_T0031549.1 MGP_C57BL6NJ_G0019190.1 mouse_genomes_project 11 83099268 83116371 - MGP_C57BL6NJ_P0031549 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099803.1 MGP_C57BL6NJ_G0037849.1 mouse_genomes_project 11 112899734 112899842 + Gm23645 snRNA snRNA MGP_C57BL6NJ_T0013005.1 MGP_C57BL6NJ_G0011050.1 mouse_genomes_project 11 89210735 89211403 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031642.1 MGP_C57BL6NJ_G0019215.1 mouse_genomes_project 11 85800042 85807786 + MGP_C57BL6NJ_P0031642 Ccl11 protein_coding protein_coding MGP_C57BL6NJ_T0031516.1 MGP_C57BL6NJ_G0019181.1 mouse_genomes_project 11 82260858 82262082 - MGP_C57BL6NJ_P0031516 Fam58b protein_coding protein_coding MGP_C57BL6NJ_T0000977.1 MGP_C57BL6NJ_G0000887.1 mouse_genomes_project 11 44752904 44758885 - TEC TEC MGP_C57BL6NJ_T0031130.1 MGP_C57BL6NJ_G0019098.1 mouse_genomes_project 11 78303304 78383130 + MGP_C57BL6NJ_P0031130 Rtn4rl1 protein_coding protein_coding MGP_C57BL6NJ_T0034311.1 MGP_C57BL6NJ_G0019860.1 mouse_genomes_project 11 126515066 126530763 + MGP_C57BL6NJ_P0034311 C1qtnf1 protein_coding protein_coding MGP_C57BL6NJ_T0034312.1 MGP_C57BL6NJ_G0019860.1 mouse_genomes_project 11 126515308 126536883 + MGP_C57BL6NJ_P0034312 C1qtnf1 protein_coding protein_coding MGP_C57BL6NJ_T0034313.1 MGP_C57BL6NJ_G0019860.1 mouse_genomes_project 11 126520642 126536883 + MGP_C57BL6NJ_P0034313 C1qtnf1 protein_coding protein_coding MGP_C57BL6NJ_T0034314.1 MGP_C57BL6NJ_G0019860.1 mouse_genomes_project 11 126530390 126530770 + MGP_C57BL6NJ_P0034314 C1qtnf1 protein_coding protein_coding MGP_C57BL6NJ_T0012761.1 MGP_C57BL6NJ_G0010806.1 mouse_genomes_project 11 3370412 3370768 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003354.1 MGP_C57BL6NJ_G0003097.1 mouse_genomes_project 11 66071668 66075483 + 9630013K17Rik antisense antisense MGP_C57BL6NJ_T0028195.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 920564 - MGP_C57BL6NJ_P0028195 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028196.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 922290 - MGP_C57BL6NJ_P0028196 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028197.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 922489 - MGP_C57BL6NJ_P0028197 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028198.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 922408 - MGP_C57BL6NJ_P0028198 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028199.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 922374 - MGP_C57BL6NJ_P0028199 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028200.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 922325 - MGP_C57BL6NJ_P0028200 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0028201.1 MGP_C57BL6NJ_G0018361.1 mouse_genomes_project 11 902361 920579 - MGP_C57BL6NJ_P0028201 Tcn2 protein_coding protein_coding MGP_C57BL6NJ_T0003394.1 MGP_C57BL6NJ_G0003130.1 mouse_genomes_project 11 86753193 86772981 - Slfn5os antisense antisense MGP_C57BL6NJ_T0030247.1 MGP_C57BL6NJ_G0018888.1 mouse_genomes_project 11 70257332 70326132 - MGP_C57BL6NJ_P0030247 Usp43 protein_coding protein_coding MGP_C57BL6NJ_T0030248.1 MGP_C57BL6NJ_G0018888.1 mouse_genomes_project 11 70257332 70326132 - MGP_C57BL6NJ_P0030248 Usp43 protein_coding protein_coding MGP_C57BL6NJ_T0030249.1 MGP_C57BL6NJ_G0018888.1 mouse_genomes_project 11 70258166 70274858 - Usp43 protein_coding retained_intron MGP_C57BL6NJ_T0030250.1 MGP_C57BL6NJ_G0018888.1 mouse_genomes_project 11 70299953 70325188 - Usp43 protein_coding processed_transcript MGP_C57BL6NJ_T0031025.1 MGP_C57BL6NJ_G0019059.1 mouse_genomes_project 11 76499279 76500218 - MGP_C57BL6NJ_P0031025 Olfr382 protein_coding protein_coding MGP_C57BL6NJ_T0012893.1 MGP_C57BL6NJ_G0010938.1 mouse_genomes_project 11 49504409 49505447 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101020.1 MGP_C57BL6NJ_G0039066.1 mouse_genomes_project 11 19682289 19682428 - Gm23582 snoRNA snoRNA MGP_C57BL6NJ_T0003380.1 MGP_C57BL6NJ_G0003118.1 mouse_genomes_project 11 81742235 81742564 - Gm11192 antisense antisense MGP_C57BL6NJ_T0029687.1 MGP_C57BL6NJ_G0018739.1 mouse_genomes_project 11 59750180 59772196 + MGP_C57BL6NJ_P0029687 protein_coding protein_coding MGP_C57BL6NJ_T0028141.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 265630 293153 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028142.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 265630 331580 - MGP_C57BL6NJ_P0028142 Limk2 protein_coding protein_coding MGP_C57BL6NJ_T0028143.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 265630 293153 - MGP_C57BL6NJ_P0028143 Limk2 protein_coding protein_coding MGP_C57BL6NJ_T0028144.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 267114 292798 - MGP_C57BL6NJ_P0028144 Limk2 protein_coding protein_coding MGP_C57BL6NJ_T0028145.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 271464 273817 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028146.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 273769 276868 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028147.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 274407 277203 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028148.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 276867 331580 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028149.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 277184 277680 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028150.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 280030 290939 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028151.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 282313 293112 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028152.1 MGP_C57BL6NJ_G0018350.1 mouse_genomes_project 11 318553 331595 - Limk2 protein_coding processed_transcript MGP_C57BL6NJ_T0009849.1 MGP_C57BL6NJ_G0007934.1 mouse_genomes_project 11 20040506 20040595 - Gm22990 miRNA miRNA MGP_C57BL6NJ_T0029299.1 MGP_C57BL6NJ_G0018637.1 mouse_genomes_project 11 50998744 51003982 + MGP_C57BL6NJ_P0029299 Cby3 protein_coding protein_coding MGP_C57BL6NJ_T0029300.1 MGP_C57BL6NJ_G0018637.1 mouse_genomes_project 11 51002043 51003982 + MGP_C57BL6NJ_P0029300 Cby3 protein_coding protein_coding MGP_C57BL6NJ_T0013039.1 MGP_C57BL6NJ_G0011084.1 mouse_genomes_project 11 105669678 105669966 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033260.1 MGP_C57BL6NJ_G0019636.1 mouse_genomes_project 11 109143738 109145930 + MGP_C57BL6NJ_P0033260 Higd1b protein_coding protein_coding MGP_C57BL6NJ_T0033261.1 MGP_C57BL6NJ_G0019636.1 mouse_genomes_project 11 109144185 109145930 + MGP_C57BL6NJ_P0033261 Higd1b protein_coding protein_coding MGP_C57BL6NJ_T0033262.1 MGP_C57BL6NJ_G0019636.1 mouse_genomes_project 11 109144335 109145930 + MGP_C57BL6NJ_P0033262 Higd1b protein_coding protein_coding MGP_C57BL6NJ_T0009975.1 MGP_C57BL6NJ_G0008060.1 mouse_genomes_project 11 129755263 129755323 - Mir7236 miRNA miRNA MGP_C57BL6NJ_T0012985.1 MGP_C57BL6NJ_G0011030.1 mouse_genomes_project 11 81601701 81601944 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030261.1 MGP_C57BL6NJ_G0018891.1 mouse_genomes_project 11 70642100 70825740 - MGP_C57BL6NJ_P0030261 Ntn1 protein_coding protein_coding MGP_C57BL6NJ_T0030262.1 MGP_C57BL6NJ_G0018891.1 mouse_genomes_project 11 70642100 70843812 - MGP_C57BL6NJ_P0030262 Ntn1 protein_coding protein_coding MGP_C57BL6NJ_T0030263.1 MGP_C57BL6NJ_G0018891.1 mouse_genomes_project 11 70824557 70825926 - MGP_C57BL6NJ_P0030263 Ntn1 protein_coding protein_coding MGP_C57BL6NJ_T0006515.1 MGP_C57BL6NJ_G0005428.1 mouse_genomes_project 11 120098907 120099964 + 4933434M16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006516.1 MGP_C57BL6NJ_G0005428.1 mouse_genomes_project 11 120098932 120108064 + 4933434M16Rik lincRNA lincRNA MGP_C57BL6NJ_T0028709.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22106486 22115476 - MGP_C57BL6NJ_P0028709 Ahsa2 protein_coding protein_coding MGP_C57BL6NJ_T0028710.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22107520 22110244 - Ahsa2 protein_coding processed_transcript MGP_C57BL6NJ_T0028711.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22108258 22109362 - Ahsa2 protein_coding processed_transcript MGP_C57BL6NJ_T0028712.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22108335 22115825 - MGP_C57BL6NJ_P0028712 Ahsa2 protein_coding protein_coding MGP_C57BL6NJ_T0028713.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22108364 22109015 - Ahsa2 protein_coding processed_transcript MGP_C57BL6NJ_T0028714.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22109046 22115843 - MGP_C57BL6NJ_P0028714 Ahsa2 protein_coding protein_coding MGP_C57BL6NJ_T0028715.1 MGP_C57BL6NJ_G0018480.1 mouse_genomes_project 11 22111091 22115833 - MGP_C57BL6NJ_P0028715 Ahsa2 protein_coding protein_coding MGP_C57BL6NJ_T0032543.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103678657 103750200 - MGP_C57BL6NJ_P0032543 Fbxl20 protein_coding protein_coding MGP_C57BL6NJ_T0032544.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103687050 103750194 - Fbxl20 protein_coding retained_intron MGP_C57BL6NJ_T0032545.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103692310 103697166 - MGP_C57BL6NJ_P0032545 Fbxl20 protein_coding protein_coding MGP_C57BL6NJ_T0032546.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103695463 103750989 - MGP_C57BL6NJ_P0032546 Fbxl20 protein_coding protein_coding MGP_C57BL6NJ_T0032547.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103698841 103726884 - Fbxl20 protein_coding processed_transcript MGP_C57BL6NJ_T0032548.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103706630 103726884 - MGP_C57BL6NJ_P0032548 Fbxl20 protein_coding protein_coding MGP_C57BL6NJ_T0032549.1 MGP_C57BL6NJ_G0019444.1 mouse_genomes_project 11 103725903 103726868 - Fbxl20 protein_coding processed_transcript MGP_C57BL6NJ_T0099331.1 MGP_C57BL6NJ_G0037392.1 mouse_genomes_project 11 126971744 126972708 - Gm11749 sense_intronic sense_intronic MGP_C57BL6NJ_T0029616.1 MGP_C57BL6NJ_G0018715.1 mouse_genomes_project 11 56133483 56191299 - MGP_C57BL6NJ_P0029616 Anxa6 protein_coding protein_coding MGP_C57BL6NJ_T0029617.1 MGP_C57BL6NJ_G0018715.1 mouse_genomes_project 11 56133483 56191299 - MGP_C57BL6NJ_P0029617 Anxa6 protein_coding protein_coding MGP_C57BL6NJ_T0029618.1 MGP_C57BL6NJ_G0018715.1 mouse_genomes_project 11 56145315 56191269 - Anxa6 protein_coding processed_transcript MGP_C57BL6NJ_T0011576.1 MGP_C57BL6NJ_G0009661.1 mouse_genomes_project 11 114682084 114682371 + Gm23120 misc_RNA misc_RNA MGP_C57BL6NJ_T0003283.1 MGP_C57BL6NJ_G0003035.1 mouse_genomes_project 11 22772266 22797475 - Gm12064 antisense antisense MGP_C57BL6NJ_T0029679.1 MGP_C57BL6NJ_G0018736.1 mouse_genomes_project 11 59623286 59632426 + MGP_C57BL6NJ_P0029679 Mrpl22 protein_coding protein_coding MGP_C57BL6NJ_T0029680.1 MGP_C57BL6NJ_G0018736.1 mouse_genomes_project 11 59623312 59629078 + Mrpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0029681.1 MGP_C57BL6NJ_G0018736.1 mouse_genomes_project 11 59623325 59630156 + Mrpl22 protein_coding processed_transcript MGP_C57BL6NJ_T0028184.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 667978 839183 - MGP_C57BL6NJ_P0028184 Osbp2 protein_coding protein_coding MGP_C57BL6NJ_T0028185.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 667980 839033 - MGP_C57BL6NJ_P0028185 Osbp2 protein_coding protein_coding MGP_C57BL6NJ_T0028186.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 668165 687579 - MGP_C57BL6NJ_P0028186 Osbp2 protein_coding protein_coding MGP_C57BL6NJ_T0028187.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 682100 739582 - MGP_C57BL6NJ_P0028187 Osbp2 protein_coding protein_coding MGP_C57BL6NJ_T0028188.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 682160 740525 - MGP_C57BL6NJ_P0028188 Osbp2 protein_coding protein_coding MGP_C57BL6NJ_T0028189.1 MGP_C57BL6NJ_G0018357.1 mouse_genomes_project 11 689764 839183 - Osbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0012908.1 MGP_C57BL6NJ_G0010953.1 mouse_genomes_project 11 54743290 54743643 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032706.1 MGP_C57BL6NJ_G0019487.1 mouse_genomes_project 11 105316941 105324164 - MGP_C57BL6NJ_P0032706 Krt39 protein_coding protein_coding MGP_C57BL6NJ_T0032707.1 MGP_C57BL6NJ_G0019487.1 mouse_genomes_project 11 105317451 105324084 - MGP_C57BL6NJ_P0032707 Krt39 protein_coding protein_coding MGP_C57BL6NJ_T0030998.1 MGP_C57BL6NJ_G0019048.1 mouse_genomes_project 11 76130835 76156158 + MGP_C57BL6NJ_P0030998 Shpk protein_coding protein_coding MGP_C57BL6NJ_T0030999.1 MGP_C57BL6NJ_G0019048.1 mouse_genomes_project 11 76130835 76156149 + MGP_C57BL6NJ_P0030999 Shpk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031707.1 MGP_C57BL6NJ_G0019234.1 mouse_genomes_project 11 87096792 87127099 + MGP_C57BL6NJ_P0031707 Slfn3 protein_coding protein_coding MGP_C57BL6NJ_T0032993.1 MGP_C57BL6NJ_G0019586.1 mouse_genomes_project 11 107421045 107427439 + MGP_C57BL6NJ_P0032993 Aoc2 protein_coding protein_coding MGP_C57BL6NJ_T0032994.1 MGP_C57BL6NJ_G0019586.1 mouse_genomes_project 11 107421069 107427231 + MGP_C57BL6NJ_P0032994 Aoc2 protein_coding protein_coding MGP_C57BL6NJ_T0030546.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509718 72513232 - MGP_C57BL6NJ_P0030546 2810408A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0030547.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509724 72513224 - MGP_C57BL6NJ_P0030547 2810408A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0030548.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509729 72513276 - MGP_C57BL6NJ_P0030548 2810408A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0030549.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509729 72513313 - MGP_C57BL6NJ_P0030549 2810408A11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030550.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509729 72513295 - MGP_C57BL6NJ_P0030550 2810408A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0030551.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509832 72513325 - 2810408A11Rik protein_coding retained_intron MGP_C57BL6NJ_T0030552.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72509832 72513295 - MGP_C57BL6NJ_P0030552 2810408A11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030553.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72510571 72512012 - 2810408A11Rik protein_coding retained_intron MGP_C57BL6NJ_T0030554.1 MGP_C57BL6NJ_G0018957.1 mouse_genomes_project 11 72511575 72513277 - MGP_C57BL6NJ_P0030554 2810408A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0032556.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103809271 103858431 + MGP_C57BL6NJ_P0032556 Cdk12 protein_coding protein_coding MGP_C57BL6NJ_T0032557.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103809526 103853582 + MGP_C57BL6NJ_P0032557 Cdk12 protein_coding protein_coding MGP_C57BL6NJ_T0032558.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103809547 103857911 + MGP_C57BL6NJ_P0032558 Cdk12 protein_coding protein_coding MGP_C57BL6NJ_T0032559.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103827234 103832356 + Cdk12 protein_coding processed_transcript MGP_C57BL6NJ_T0032560.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103848614 103888752 + Cdk12 protein_coding processed_transcript MGP_C57BL6NJ_T0032561.1 MGP_C57BL6NJ_G0019446.1 mouse_genomes_project 11 103873099 103877609 + Cdk12 protein_coding processed_transcript MGP_C57BL6NJ_T0029404.1 MGP_C57BL6NJ_G0018663.1 mouse_genomes_project 11 52446584 52454129 + MGP_C57BL6NJ_P0029404 protein_coding protein_coding MGP_C57BL6NJ_T0029405.1 MGP_C57BL6NJ_G0018663.1 mouse_genomes_project 11 52446586 52454128 + MGP_C57BL6NJ_P0029405 protein_coding protein_coding MGP_C57BL6NJ_T0012875.1 MGP_C57BL6NJ_G0010920.1 mouse_genomes_project 11 40460604 40460950 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029195.1 MGP_C57BL6NJ_G0018607.1 mouse_genomes_project 11 49624511 49625492 - MGP_C57BL6NJ_P0029195 Olfr1396 protein_coding protein_coding MGP_C57BL6NJ_T0099244.1 MGP_C57BL6NJ_G0037308.1 mouse_genomes_project 11 91239916 91240047 - Gm22387 scaRNA scaRNA MGP_C57BL6NJ_T0030776.1 MGP_C57BL6NJ_G0019000.1 mouse_genomes_project 11 73352156 73356181 - MGP_C57BL6NJ_P0030776 Pfn1 protein_coding protein_coding MGP_C57BL6NJ_T0030777.1 MGP_C57BL6NJ_G0019000.1 mouse_genomes_project 11 73353475 73356158 - MGP_C57BL6NJ_P0030777 Pfn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030778.1 MGP_C57BL6NJ_G0019000.1 mouse_genomes_project 11 73354148 73356145 - Pfn1 protein_coding retained_intron MGP_C57BL6NJ_T0030779.1 MGP_C57BL6NJ_G0019000.1 mouse_genomes_project 11 73354158 73356135 - MGP_C57BL6NJ_P0030779 Pfn1 protein_coding protein_coding MGP_C57BL6NJ_T0029240.1 MGP_C57BL6NJ_G0018623.1 mouse_genomes_project 11 50167136 50216442 + Flt4 protein_coding processed_transcript MGP_C57BL6NJ_T0029241.1 MGP_C57BL6NJ_G0018623.1 mouse_genomes_project 11 50167136 50242774 + MGP_C57BL6NJ_P0029241 Flt4 protein_coding protein_coding MGP_C57BL6NJ_T0033401.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111067538 111085685 + MGP_C57BL6NJ_P0033401 Myl4 protein_coding protein_coding MGP_C57BL6NJ_T0033402.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111070501 111087149 + MGP_C57BL6NJ_P0033402 Myl4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033403.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111076954 111084951 + MGP_C57BL6NJ_P0033403 Myl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033404.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111080262 111087146 + Myl4 protein_coding retained_intron MGP_C57BL6NJ_T0033405.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111081976 111086284 + Myl4 protein_coding retained_intron MGP_C57BL6NJ_T0033406.1 MGP_C57BL6NJ_G0019669.1 mouse_genomes_project 11 111084900 111095647 + MGP_C57BL6NJ_P0033406 Myl4 protein_coding protein_coding MGP_C57BL6NJ_T0003479.1 MGP_C57BL6NJ_G0003198.1 mouse_genomes_project 11 115863856 115866569 - Gm11670 antisense antisense MGP_C57BL6NJ_T0032505.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103364234 103372094 + MGP_C57BL6NJ_P0032505 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032506.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103364804 103406073 + MGP_C57BL6NJ_P0032506 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032507.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103364906 103372574 + Lasp1 protein_coding retained_intron MGP_C57BL6NJ_T0032508.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103365072 103400914 + MGP_C57BL6NJ_P0032508 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032509.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103365232 103400902 + MGP_C57BL6NJ_P0032509 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032510.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103365405 103400870 + MGP_C57BL6NJ_P0032510 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032511.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103365531 103390230 + MGP_C57BL6NJ_P0032511 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032512.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103365537 103372174 + MGP_C57BL6NJ_P0032512 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032513.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103367232 103390232 + MGP_C57BL6NJ_P0032513 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032514.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103370446 103403426 + MGP_C57BL6NJ_P0032514 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032515.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103371564 103372155 + MGP_C57BL6NJ_P0032515 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032516.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103371756 103381028 + MGP_C57BL6NJ_P0032516 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032517.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103380493 103390271 + MGP_C57BL6NJ_P0032517 Lasp1 protein_coding protein_coding MGP_C57BL6NJ_T0032518.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103400495 103403512 + Lasp1 protein_coding retained_intron MGP_C57BL6NJ_T0032519.1 MGP_C57BL6NJ_G0019436.1 mouse_genomes_project 11 103400730 103401691 + Lasp1 protein_coding retained_intron MGP_C57BL6NJ_T0006342.1 MGP_C57BL6NJ_G0005292.1 mouse_genomes_project 11 17855870 17859184 - lincRNA lincRNA MGP_C57BL6NJ_T0028381.1 MGP_C57BL6NJ_G0018402.1 mouse_genomes_project 11 3027911 3038053 + MGP_C57BL6NJ_P0028381 Aebp1 protein_coding protein_coding MGP_C57BL6NJ_T0028382.1 MGP_C57BL6NJ_G0018402.1 mouse_genomes_project 11 3033566 3038053 + MGP_C57BL6NJ_P0028382 Aebp1 protein_coding protein_coding MGP_C57BL6NJ_T0028383.1 MGP_C57BL6NJ_G0018402.1 mouse_genomes_project 11 3035112 3036106 + Aebp1 protein_coding processed_transcript MGP_C57BL6NJ_T0031079.1 MGP_C57BL6NJ_G0019088.1 mouse_genomes_project 11 77748838 77803491 - Pafah1b1 protein_coding retained_intron MGP_C57BL6NJ_T0031080.1 MGP_C57BL6NJ_G0019088.1 mouse_genomes_project 11 77748838 77803826 - MGP_C57BL6NJ_P0031080 Pafah1b1 protein_coding protein_coding MGP_C57BL6NJ_T0031081.1 MGP_C57BL6NJ_G0019088.1 mouse_genomes_project 11 77748839 77803474 - Pafah1b1 protein_coding retained_intron MGP_C57BL6NJ_T0031082.1 MGP_C57BL6NJ_G0019088.1 mouse_genomes_project 11 77748839 77803014 - MGP_C57BL6NJ_P0031082 Pafah1b1 protein_coding protein_coding MGP_C57BL6NJ_T0031083.1 MGP_C57BL6NJ_G0019088.1 mouse_genomes_project 11 77766063 77802327 - MGP_C57BL6NJ_P0031083 Pafah1b1 protein_coding protein_coding MGP_C57BL6NJ_T0003395.1 MGP_C57BL6NJ_G0003131.1 mouse_genomes_project 11 89360564 89361013 + Appbp2os antisense pseudogene MGP_C57BL6NJ_T0003396.1 MGP_C57BL6NJ_G0003131.1 mouse_genomes_project 11 89360960 89364101 + Appbp2os antisense antisense MGP_C57BL6NJ_T0013038.1 MGP_C57BL6NJ_G0011083.1 mouse_genomes_project 11 105596879 105597047 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034315.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564728 126577004 + MGP_C57BL6NJ_P0034315 Engase protein_coding protein_coding MGP_C57BL6NJ_T0034316.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564840 126567076 + MGP_C57BL6NJ_P0034316 Engase protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034317.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564845 126570859 + MGP_C57BL6NJ_P0034317 Engase protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034318.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564859 126576882 + MGP_C57BL6NJ_P0034318 Engase protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034319.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564871 126575568 + MGP_C57BL6NJ_P0034319 Engase protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034320.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126564882 126577004 + MGP_C57BL6NJ_P0034320 Engase protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034321.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126568916 126570741 + Engase protein_coding retained_intron MGP_C57BL6NJ_T0034322.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126570183 126575568 + Engase protein_coding retained_intron MGP_C57BL6NJ_T0034323.1 MGP_C57BL6NJ_G0019861.1 mouse_genomes_project 11 126572284 126575304 + MGP_C57BL6NJ_P0034323 Engase protein_coding protein_coding MGP_C57BL6NJ_T0012970.1 MGP_C57BL6NJ_G0011015.1 mouse_genomes_project 11 76157694 76157913 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101085.1 MGP_C57BL6NJ_G0039131.1 mouse_genomes_project 11 113174963 113175096 + Gm22711 snoRNA snoRNA MGP_C57BL6NJ_T0031879.1 MGP_C57BL6NJ_G0019278.1 mouse_genomes_project 11 90256548 90403644 - MGP_C57BL6NJ_P0031879 Brip1 protein_coding protein_coding MGP_C57BL6NJ_T0031880.1 MGP_C57BL6NJ_G0019278.1 mouse_genomes_project 11 90397488 90403615 - Brip1 protein_coding processed_transcript MGP_C57BL6NJ_T0031881.1 MGP_C57BL6NJ_G0019278.1 mouse_genomes_project 11 90398154 90403617 - Brip1 protein_coding processed_transcript MGP_C57BL6NJ_T0009907.1 MGP_C57BL6NJ_G0007992.1 mouse_genomes_project 11 78435159 78435280 - miRNA miRNA MGP_C57BL6NJ_T0017601.1 MGP_C57BL6NJ_G0015538.1 mouse_genomes_project 11 220854 250893 - Gm12592 processed_transcript processed_transcript MGP_C57BL6NJ_T0012818.1 MGP_C57BL6NJ_G0010863.1 mouse_genomes_project 11 19731201 19731502 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029359.1 MGP_C57BL6NJ_G0018652.1 mouse_genomes_project 11 51713928 51714870 + MGP_C57BL6NJ_P0029359 Olfr54 protein_coding protein_coding MGP_C57BL6NJ_T0031436.1 MGP_C57BL6NJ_G0019160.1 mouse_genomes_project 11 81647540 81663965 + MGP_C57BL6NJ_P0031436 Proca1 protein_coding protein_coding MGP_C57BL6NJ_T0031437.1 MGP_C57BL6NJ_G0019160.1 mouse_genomes_project 11 81648852 81663928 + MGP_C57BL6NJ_P0031437 Proca1 protein_coding protein_coding MGP_C57BL6NJ_T0031438.1 MGP_C57BL6NJ_G0019160.1 mouse_genomes_project 11 81648882 81664224 + MGP_C57BL6NJ_P0031438 Proca1 protein_coding protein_coding MGP_C57BL6NJ_T0031439.1 MGP_C57BL6NJ_G0019160.1 mouse_genomes_project 11 81662887 81663552 + Proca1 protein_coding processed_transcript MGP_C57BL6NJ_T0033487.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112888643 112895581 - MGP_C57BL6NJ_P0033487 Ftsj3 protein_coding protein_coding MGP_C57BL6NJ_T0033488.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112889400 112890200 - Ftsj3 protein_coding retained_intron MGP_C57BL6NJ_T0033489.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112890510 112892056 - Ftsj3 protein_coding retained_intron MGP_C57BL6NJ_T0033490.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112892877 112893497 - Ftsj3 protein_coding retained_intron MGP_C57BL6NJ_T0033491.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112893793 112895298 - Ftsj3 protein_coding retained_intron MGP_C57BL6NJ_T0033492.1 MGP_C57BL6NJ_G0019691.1 mouse_genomes_project 11 112894364 112895306 - Ftsj3 protein_coding retained_intron MGP_C57BL6NJ_T0009954.1 MGP_C57BL6NJ_G0008039.1 mouse_genomes_project 11 113520248 113520315 - Mir3064 miRNA miRNA MGP_C57BL6NJ_T0031496.1 MGP_C57BL6NJ_G0019175.1 mouse_genomes_project 11 81994327 81999404 - MGP_C57BL6NJ_P0031496 Tmem199 protein_coding protein_coding MGP_C57BL6NJ_T0031497.1 MGP_C57BL6NJ_G0019175.1 mouse_genomes_project 11 81994524 81996091 - Tmem199 protein_coding retained_intron MGP_C57BL6NJ_T0031498.1 MGP_C57BL6NJ_G0019175.1 mouse_genomes_project 11 81995780 81999277 - Tmem199 protein_coding retained_intron MGP_C57BL6NJ_T0031499.1 MGP_C57BL6NJ_G0019175.1 mouse_genomes_project 11 81996745 81999315 - Tmem199 protein_coding retained_intron MGP_C57BL6NJ_T0032720.1 MGP_C57BL6NJ_G0019499.1 mouse_genomes_project 11 105452778 105453752 - MGP_C57BL6NJ_P0032720 Krtap4-2 protein_coding protein_coding MGP_C57BL6NJ_T0030555.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72513409 72515943 + Neurl4 protein_coding processed_transcript MGP_C57BL6NJ_T0030556.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514153 72526059 + MGP_C57BL6NJ_P0030556 Neurl4 protein_coding protein_coding MGP_C57BL6NJ_T0030557.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514153 72526059 + MGP_C57BL6NJ_P0030557 Neurl4 protein_coding protein_coding MGP_C57BL6NJ_T0030558.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514153 72526059 + MGP_C57BL6NJ_P0030558 Neurl4 protein_coding protein_coding MGP_C57BL6NJ_T0030559.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514228 72526364 + MGP_C57BL6NJ_P0030559 Neurl4 protein_coding protein_coding MGP_C57BL6NJ_T0030560.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514570 72518141 + Neurl4 protein_coding retained_intron MGP_C57BL6NJ_T0030561.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72514699 72516458 + Neurl4 protein_coding processed_transcript MGP_C57BL6NJ_T0030562.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72515935 72525875 + MGP_C57BL6NJ_P0030562 Neurl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030563.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72516578 72521279 + MGP_C57BL6NJ_P0030563 Neurl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030564.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72519807 72521065 + Neurl4 protein_coding retained_intron MGP_C57BL6NJ_T0030565.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72521178 72522868 + Neurl4 protein_coding retained_intron MGP_C57BL6NJ_T0030566.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72521519 72523409 + Neurl4 protein_coding retained_intron MGP_C57BL6NJ_T0030567.1 MGP_C57BL6NJ_G0018958.1 mouse_genomes_project 11 72523579 72525696 + MGP_C57BL6NJ_P0030567 Neurl4 protein_coding protein_coding MGP_C57BL6NJ_T0003368.1 MGP_C57BL6NJ_G0003108.1 mouse_genomes_project 11 71864239 71866535 - Kcnab3os antisense antisense MGP_C57BL6NJ_T0003360.1 MGP_C57BL6NJ_G0003102.1 mouse_genomes_project 11 69542678 69580097 - Gm12300 antisense antisense MGP_C57BL6NJ_T0003361.1 MGP_C57BL6NJ_G0003102.1 mouse_genomes_project 11 69555445 69571320 - Gm12300 antisense antisense MGP_C57BL6NJ_T0003362.1 MGP_C57BL6NJ_G0003102.1 mouse_genomes_project 11 69555762 69579805 - Gm12300 antisense antisense MGP_C57BL6NJ_T0029235.1 MGP_C57BL6NJ_G0018618.1 mouse_genomes_project 11 49974931 49976004 + MGP_C57BL6NJ_P0029235 Olfr1389 protein_coding protein_coding MGP_C57BL6NJ_T0033647.1 MGP_C57BL6NJ_G0019723.1 mouse_genomes_project 11 116338123 116378158 + MGP_C57BL6NJ_P0033647 Gna13 protein_coding protein_coding MGP_C57BL6NJ_T0033648.1 MGP_C57BL6NJ_G0019723.1 mouse_genomes_project 11 116338123 116355838 + MGP_C57BL6NJ_P0033648 Gna13 protein_coding protein_coding MGP_C57BL6NJ_T0102760.1 MGP_C57BL6NJ_G0040555.1 mouse_genomes_project 11 99990947 99991692 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032825.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106562302 106564271 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032826.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106562302 106600691 - MGP_C57BL6NJ_P0032826 Dnajc7 protein_coding protein_coding MGP_C57BL6NJ_T0032827.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106562748 106564977 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032828.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106563824 106571655 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032829.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106571513 106600099 - MGP_C57BL6NJ_P0032829 Dnajc7 protein_coding protein_coding MGP_C57BL6NJ_T0032830.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106571520 106600120 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032831.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106571645 106577335 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032832.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106573590 106593979 - MGP_C57BL6NJ_P0032832 Dnajc7 protein_coding protein_coding MGP_C57BL6NJ_T0032833.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106578053 106600102 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0032834.1 MGP_C57BL6NJ_G0019552.1 mouse_genomes_project 11 106578962 106600182 - Dnajc7 protein_coding processed_transcript MGP_C57BL6NJ_T0030919.1 MGP_C57BL6NJ_G0019027.1 mouse_genomes_project 11 75144935 75149881 + MGP_C57BL6NJ_P0030919 Fbxo39 protein_coding protein_coding MGP_C57BL6NJ_T0102754.1 MGP_C57BL6NJ_G0040549.1 mouse_genomes_project 11 87641096 87641943 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003434.1 MGP_C57BL6NJ_G0003160.1 mouse_genomes_project 11 104253765 104254548 + antisense antisense MGP_C57BL6NJ_T0030788.1 MGP_C57BL6NJ_G0019002.1 mouse_genomes_project 11 73367117 73372763 - MGP_C57BL6NJ_P0030788 Spag7 protein_coding protein_coding MGP_C57BL6NJ_T0030789.1 MGP_C57BL6NJ_G0019002.1 mouse_genomes_project 11 73367349 73372565 - Spag7 protein_coding retained_intron MGP_C57BL6NJ_T0030790.1 MGP_C57BL6NJ_G0019002.1 mouse_genomes_project 11 73367686 73372626 - Spag7 protein_coding retained_intron MGP_C57BL6NJ_T0030791.1 MGP_C57BL6NJ_G0019002.1 mouse_genomes_project 11 73367745 73372637 - MGP_C57BL6NJ_P0030791 Spag7 protein_coding protein_coding MGP_C57BL6NJ_T0031649.1 MGP_C57BL6NJ_G0019219.1 mouse_genomes_project 11 86152694 86216248 + MGP_C57BL6NJ_P0031649 Tmem132e protein_coding protein_coding MGP_C57BL6NJ_T0031650.1 MGP_C57BL6NJ_G0019219.1 mouse_genomes_project 11 86152694 86216253 + MGP_C57BL6NJ_P0031650 Tmem132e protein_coding protein_coding MGP_C57BL6NJ_T0031651.1 MGP_C57BL6NJ_G0019219.1 mouse_genomes_project 11 86152917 86204644 + Tmem132e protein_coding processed_transcript MGP_C57BL6NJ_T0031652.1 MGP_C57BL6NJ_G0019219.1 mouse_genomes_project 11 86208177 86212820 + Tmem132e protein_coding retained_intron MGP_C57BL6NJ_T0034248.1 MGP_C57BL6NJ_G0019843.1 mouse_genomes_project 11 125805877 125815497 + MGP_C57BL6NJ_P0034248 6030468B19Rik protein_coding protein_coding MGP_C57BL6NJ_T0031636.1 MGP_C57BL6NJ_G0019211.1 mouse_genomes_project 11 85600179 85605920 + 5530401A14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0031637.1 MGP_C57BL6NJ_G0019211.1 mouse_genomes_project 11 85600185 85634935 + MGP_C57BL6NJ_P0031637 5530401A14Rik protein_coding protein_coding MGP_C57BL6NJ_T0012941.1 MGP_C57BL6NJ_G0010986.1 mouse_genomes_project 11 63324272 63324686 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003522.1 MGP_C57BL6NJ_G0003229.1 mouse_genomes_project 11 129293266 129294187 + Gm28192 antisense antisense MGP_C57BL6NJ_T0032768.1 MGP_C57BL6NJ_G0019537.1 mouse_genomes_project 11 106148102 106155359 - MGP_C57BL6NJ_P0032768 Krt16 protein_coding protein_coding MGP_C57BL6NJ_T0030458.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72234549 72242407 - MGP_C57BL6NJ_P0030458 Mpdu1 protein_coding protein_coding MGP_C57BL6NJ_T0030459.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72234813 72242329 - MGP_C57BL6NJ_P0030459 Mpdu1 protein_coding protein_coding MGP_C57BL6NJ_T0030460.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72234879 72242352 - MGP_C57BL6NJ_P0030460 Mpdu1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030461.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72234981 72236133 - Mpdu1 protein_coding retained_intron MGP_C57BL6NJ_T0030462.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72235006 72242352 - MGP_C57BL6NJ_P0030462 Mpdu1 protein_coding protein_coding MGP_C57BL6NJ_T0030463.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72235014 72242283 - MGP_C57BL6NJ_P0030463 Mpdu1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030464.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72235065 72236106 - Mpdu1 protein_coding retained_intron MGP_C57BL6NJ_T0030465.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72235585 72242269 - Mpdu1 protein_coding retained_intron MGP_C57BL6NJ_T0030466.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72236199 72242325 - Mpdu1 protein_coding retained_intron MGP_C57BL6NJ_T0030467.1 MGP_C57BL6NJ_G0018935.1 mouse_genomes_project 11 72236328 72237258 - Mpdu1 protein_coding retained_intron MGP_C57BL6NJ_T0006341.1 MGP_C57BL6NJ_G0005291.1 mouse_genomes_project 11 17246092 17256843 + 4933406G16Rik lincRNA lincRNA MGP_C57BL6NJ_T0012822.1 MGP_C57BL6NJ_G0010867.1 mouse_genomes_project 11 19979680 19980064 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003392.1 MGP_C57BL6NJ_G0003129.1 mouse_genomes_project 11 86577973 86579415 - Gm11423 antisense antisense MGP_C57BL6NJ_T0003393.1 MGP_C57BL6NJ_G0003129.1 mouse_genomes_project 11 86578203 86579415 - Gm11423 antisense antisense MGP_C57BL6NJ_T0013007.1 MGP_C57BL6NJ_G0011052.1 mouse_genomes_project 11 90143889 90144368 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003276.1 MGP_C57BL6NJ_G0003030.1 mouse_genomes_project 11 14799370 14814642 - Egfros antisense antisense MGP_C57BL6NJ_T0034334.1 MGP_C57BL6NJ_G0019863.1 mouse_genomes_project 11 127097996 127102638 + MGP_C57BL6NJ_P0034334 Enpp7 protein_coding protein_coding MGP_C57BL6NJ_T0034335.1 MGP_C57BL6NJ_G0019863.1 mouse_genomes_project 11 127098024 127102462 + MGP_C57BL6NJ_P0034335 Enpp7 protein_coding protein_coding MGP_C57BL6NJ_T0006351.1 MGP_C57BL6NJ_G0005301.1 mouse_genomes_project 11 21285677 21289577 + Gm12056 lincRNA lincRNA MGP_C57BL6NJ_T0009964.1 MGP_C57BL6NJ_G0008049.1 mouse_genomes_project 11 126044390 126044471 + Mir6933 miRNA miRNA MGP_C57BL6NJ_T0028934.1 MGP_C57BL6NJ_G0018531.1 mouse_genomes_project 11 31691743 31757270 + MGP_C57BL6NJ_P0028934 Ubtd2 protein_coding protein_coding MGP_C57BL6NJ_T0098966.1 MGP_C57BL6NJ_G0037030.1 mouse_genomes_project 11 87720955 87721065 - Gm22311 rRNA rRNA MGP_C57BL6NJ_T0099740.1 MGP_C57BL6NJ_G0037786.1 mouse_genomes_project 11 21431306 21431410 + Gm24917 snRNA snRNA MGP_C57BL6NJ_T0099245.1 MGP_C57BL6NJ_G0037309.1 mouse_genomes_project 11 123941933 123942060 - Gm26413 scaRNA scaRNA MGP_C57BL6NJ_T0032311.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101146435 101154958 + MGP_C57BL6NJ_P0032311 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032312.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101151514 101154958 + MGP_C57BL6NJ_P0032312 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032313.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101151528 101154958 + MGP_C57BL6NJ_P0032313 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032314.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101151887 101154958 + MGP_C57BL6NJ_P0032314 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032315.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101151893 101154958 + MGP_C57BL6NJ_P0032315 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032316.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101152455 101154958 + MGP_C57BL6NJ_P0032316 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032317.1 MGP_C57BL6NJ_G0019384.1 mouse_genomes_project 11 101152832 101154958 + MGP_C57BL6NJ_P0032317 Gngt2 protein_coding protein_coding MGP_C57BL6NJ_T0032750.1 MGP_C57BL6NJ_G0019527.1 mouse_genomes_project 11 105948666 105953630 - MGP_C57BL6NJ_P0032750 Krt34 protein_coding protein_coding MGP_C57BL6NJ_T0032782.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106324874 106328633 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032783.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106326535 106359842 - MGP_C57BL6NJ_P0032783 Jup protein_coding protein_coding MGP_C57BL6NJ_T0032784.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106326975 106330042 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032785.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106328212 106359842 - MGP_C57BL6NJ_P0032785 Jup protein_coding protein_coding MGP_C57BL6NJ_T0032786.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106328273 106329225 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032787.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106341138 106345167 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032788.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106345389 106359856 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032789.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106345469 106348816 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0032790.1 MGP_C57BL6NJ_G0019543.1 mouse_genomes_project 11 106345478 106348845 - Jup protein_coding processed_transcript MGP_C57BL6NJ_T0003476.1 MGP_C57BL6NJ_G0003195.1 mouse_genomes_project 11 114854113 114854721 + Gm11657 antisense antisense MGP_C57BL6NJ_T0028576.1 MGP_C57BL6NJ_G0018447.1 mouse_genomes_project 11 14969624 15010841 - MGP_C57BL6NJ_P0028576 Plek protein_coding protein_coding MGP_C57BL6NJ_T0028577.1 MGP_C57BL6NJ_G0018447.1 mouse_genomes_project 11 14993102 15002362 - MGP_C57BL6NJ_P0028577 Plek protein_coding protein_coding MGP_C57BL6NJ_T0102759.1 MGP_C57BL6NJ_G0040554.1 mouse_genomes_project 11 99973957 99974687 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012987.1 MGP_C57BL6NJ_G0011032.1 mouse_genomes_project 11 82073293 82074412 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032855.1 MGP_C57BL6NJ_G0019557.1 mouse_genomes_project 11 106693803 106694529 + MGP_C57BL6NJ_P0032855 Hspb9 protein_coding protein_coding MGP_C57BL6NJ_T0032856.1 MGP_C57BL6NJ_G0019557.1 mouse_genomes_project 11 106693875 106694527 + MGP_C57BL6NJ_P0032856 Hspb9 protein_coding protein_coding MGP_C57BL6NJ_T0012929.1 MGP_C57BL6NJ_G0010974.1 mouse_genomes_project 11 61184616 61186098 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029200.1 MGP_C57BL6NJ_G0018610.1 mouse_genomes_project 11 49677967 49678906 + MGP_C57BL6NJ_P0029200 Olfr1394 protein_coding protein_coding MGP_C57BL6NJ_T0030751.1 MGP_C57BL6NJ_G0018995.1 mouse_genomes_project 11 73314016 73318328 - MGP_C57BL6NJ_P0030751 Chrne protein_coding protein_coding MGP_C57BL6NJ_T0030752.1 MGP_C57BL6NJ_G0018995.1 mouse_genomes_project 11 73314016 73318350 - MGP_C57BL6NJ_P0030752 Chrne protein_coding protein_coding MGP_C57BL6NJ_T0030753.1 MGP_C57BL6NJ_G0018995.1 mouse_genomes_project 11 73314018 73314807 - Chrne protein_coding retained_intron MGP_C57BL6NJ_T0030754.1 MGP_C57BL6NJ_G0018995.1 mouse_genomes_project 11 73314026 73314831 - Chrne protein_coding retained_intron MGP_C57BL6NJ_T0032079.1 MGP_C57BL6NJ_G0019330.1 mouse_genomes_project 11 94885047 94951394 + Mmd protein_coding processed_transcript MGP_C57BL6NJ_T0032080.1 MGP_C57BL6NJ_G0019330.1 mouse_genomes_project 11 94885047 94953753 + Mmd protein_coding processed_transcript MGP_C57BL6NJ_T0032081.1 MGP_C57BL6NJ_G0019330.1 mouse_genomes_project 11 94885049 94930592 + Mmd protein_coding processed_transcript MGP_C57BL6NJ_T0032082.1 MGP_C57BL6NJ_G0019330.1 mouse_genomes_project 11 94951953 94971484 + MGP_C57BL6NJ_P0032082 Mmd protein_coding protein_coding MGP_C57BL6NJ_T0032083.1 MGP_C57BL6NJ_G0019330.1 mouse_genomes_project 11 94951973 94981724 + MGP_C57BL6NJ_P0032083 Mmd protein_coding protein_coding MGP_C57BL6NJ_T0009882.1 MGP_C57BL6NJ_G0007967.1 mouse_genomes_project 11 62564141 62564205 + Mir5100 miRNA miRNA MGP_C57BL6NJ_T0012816.1 MGP_C57BL6NJ_G0010861.1 mouse_genomes_project 11 19658985 19659587 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099771.1 MGP_C57BL6NJ_G0037817.1 mouse_genomes_project 11 82334614 82334701 + Gm23219 snRNA snRNA MGP_C57BL6NJ_T0028584.1 MGP_C57BL6NJ_G0018451.1 mouse_genomes_project 11 15235216 15243587 - MGP_C57BL6NJ_P0028584 Pno1 protein_coding protein_coding MGP_C57BL6NJ_T0028585.1 MGP_C57BL6NJ_G0018451.1 mouse_genomes_project 11 15240807 15243073 - Pno1 protein_coding processed_transcript MGP_C57BL6NJ_T0029184.1 MGP_C57BL6NJ_G0018602.1 mouse_genomes_project 11 49364069 49374569 - MGP_C57BL6NJ_P0029184 Gm5431 protein_coding protein_coding MGP_C57BL6NJ_T0028342.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200059 2229359 - MGP_C57BL6NJ_P0028342 Emid1 protein_coding protein_coding MGP_C57BL6NJ_T0028343.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200059 2252146 - MGP_C57BL6NJ_P0028343 Emid1 protein_coding protein_coding MGP_C57BL6NJ_T0028344.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200060 2252129 - MGP_C57BL6NJ_P0028344 Emid1 protein_coding protein_coding MGP_C57BL6NJ_T0028345.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200065 2228230 - MGP_C57BL6NJ_P0028345 Emid1 protein_coding protein_coding MGP_C57BL6NJ_T0028346.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200439 2227823 - Emid1 protein_coding retained_intron MGP_C57BL6NJ_T0028347.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2200701 2227644 - MGP_C57BL6NJ_P0028347 Emid1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028348.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2230555 2252126 - MGP_C57BL6NJ_P0028348 Emid1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028349.1 MGP_C57BL6NJ_G0018391.1 mouse_genomes_project 11 2233988 2250173 - Emid1 protein_coding processed_transcript MGP_C57BL6NJ_T0033723.1 MGP_C57BL6NJ_G0019742.1 mouse_genomes_project 11 120967544 120976006 + MGP_C57BL6NJ_P0033723 Sstr2 protein_coding protein_coding MGP_C57BL6NJ_T0033724.1 MGP_C57BL6NJ_G0019742.1 mouse_genomes_project 11 120967678 120975873 + MGP_C57BL6NJ_P0033724 Sstr2 protein_coding protein_coding MGP_C57BL6NJ_T0033725.1 MGP_C57BL6NJ_G0019742.1 mouse_genomes_project 11 120974234 120975614 + MGP_C57BL6NJ_P0033725 Sstr2 protein_coding protein_coding MGP_C57BL6NJ_T0003430.1 MGP_C57BL6NJ_G0003156.1 mouse_genomes_project 11 102774847 102777996 + Gm11592 antisense antisense MGP_C57BL6NJ_T0012837.1 MGP_C57BL6NJ_G0010882.1 mouse_genomes_project 11 26278014 26278411 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033930.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301383 123306349 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0033931.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301383 123306389 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0033932.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301383 123306431 - MGP_C57BL6NJ_P0033932 Mif4gd protein_coding protein_coding MGP_C57BL6NJ_T0033933.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301383 123305965 - MGP_C57BL6NJ_P0033933 Mif4gd protein_coding protein_coding MGP_C57BL6NJ_T0033934.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301614 123306340 - MGP_C57BL6NJ_P0033934 Mif4gd protein_coding protein_coding MGP_C57BL6NJ_T0033935.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301672 123306292 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0033936.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301882 123306361 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0033937.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123301977 123305588 - MGP_C57BL6NJ_P0033937 Mif4gd protein_coding protein_coding MGP_C57BL6NJ_T0033938.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123302642 123306366 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0033939.1 MGP_C57BL6NJ_G0019789.1 mouse_genomes_project 11 123305563 123306382 - Mif4gd protein_coding processed_transcript MGP_C57BL6NJ_T0030236.1 MGP_C57BL6NJ_G0018884.1 mouse_genomes_project 11 70045377 70147309 - MGP_C57BL6NJ_P0030236 Glp2r protein_coding protein_coding MGP_C57BL6NJ_T0030239.1 MGP_C57BL6NJ_G0018884.1 mouse_genomes_project 11 70092463 70163334 - MGP_C57BL6NJ_P0030239 Glp2r protein_coding protein_coding MGP_C57BL6NJ_T0009883.1 MGP_C57BL6NJ_G0007968.1 mouse_genomes_project 11 66747611 66747757 - Gm24275 miRNA miRNA MGP_C57BL6NJ_T0033420.1 MGP_C57BL6NJ_G0019674.1 mouse_genomes_project 11 111715412 111715781 + MGP_C57BL6NJ_P0033420 Gm10842 protein_coding protein_coding MGP_C57BL6NJ_T0031514.1 MGP_C57BL6NJ_G0019180.1 mouse_genomes_project 11 82061695 82201476 - MGP_C57BL6NJ_P0031514 Nlk protein_coding protein_coding MGP_C57BL6NJ_T0031515.1 MGP_C57BL6NJ_G0019180.1 mouse_genomes_project 11 82115307 82200597 - Nlk protein_coding retained_intron MGP_C57BL6NJ_T0012932.1 MGP_C57BL6NJ_G0010977.1 mouse_genomes_project 11 62119689 62120651 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009910.1 MGP_C57BL6NJ_G0007995.1 mouse_genomes_project 11 80401113 80401222 - Mir423 miRNA miRNA MGP_C57BL6NJ_T0099247.1 MGP_C57BL6NJ_G0037311.1 mouse_genomes_project 11 124992933 124993126 + Gm26083 scaRNA scaRNA MGP_C57BL6NJ_T0029406.1 MGP_C57BL6NJ_G0018664.1 mouse_genomes_project 11 52483840 52487333 - MGP_C57BL6NJ_P0029406 0610009B22Rik protein_coding protein_coding MGP_C57BL6NJ_T0029407.1 MGP_C57BL6NJ_G0018664.1 mouse_genomes_project 11 52483840 52487112 - MGP_C57BL6NJ_P0029407 0610009B22Rik protein_coding protein_coding MGP_C57BL6NJ_T0033175.1 MGP_C57BL6NJ_G0019623.1 mouse_genomes_project 11 108606366 108622803 - MGP_C57BL6NJ_P0033175 Slc4a1 protein_coding protein_coding MGP_C57BL6NJ_T0033176.1 MGP_C57BL6NJ_G0019623.1 mouse_genomes_project 11 108616605 108618092 - Slc4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0033177.1 MGP_C57BL6NJ_G0019623.1 mouse_genomes_project 11 108617685 108621227 - Slc4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0033178.1 MGP_C57BL6NJ_G0019623.1 mouse_genomes_project 11 108617718 108622770 - Slc4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0033179.1 MGP_C57BL6NJ_G0019623.1 mouse_genomes_project 11 108618909 108623726 - Slc4a1 protein_coding processed_transcript MGP_C57BL6NJ_T0034661.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129291171 129320691 - MGP_C57BL6NJ_P0034661 Csnk1d protein_coding protein_coding MGP_C57BL6NJ_T0034662.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129291171 129320453 - MGP_C57BL6NJ_P0034662 Csnk1d protein_coding protein_coding MGP_C57BL6NJ_T0034663.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129293070 129295109 - Csnk1d protein_coding processed_transcript MGP_C57BL6NJ_T0034664.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129293195 129301048 - Csnk1d protein_coding processed_transcript MGP_C57BL6NJ_T0034665.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129297034 129297484 - Csnk1d protein_coding processed_transcript MGP_C57BL6NJ_T0034666.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129301894 129320232 - MGP_C57BL6NJ_P0034666 Csnk1d protein_coding protein_coding MGP_C57BL6NJ_T0034667.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129301912 129320348 - MGP_C57BL6NJ_P0034667 Csnk1d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034668.1 MGP_C57BL6NJ_G0019925.1 mouse_genomes_project 11 129312201 129320412 - Csnk1d protein_coding retained_intron MGP_C57BL6NJ_T0028848.1 MGP_C57BL6NJ_G0018508.1 mouse_genomes_project 11 29542927 29697448 - MGP_C57BL6NJ_P0028848 Acyp2 protein_coding protein_coding MGP_C57BL6NJ_T0009896.1 MGP_C57BL6NJ_G0007981.1 mouse_genomes_project 11 72853357 72853441 + Mir497 miRNA miRNA MGP_C57BL6NJ_T0029011.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40525514 40541363 - MGP_C57BL6NJ_P0029011 Mat2b protein_coding protein_coding MGP_C57BL6NJ_T0029012.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40525514 40544599 - MGP_C57BL6NJ_P0029012 Mat2b protein_coding protein_coding MGP_C57BL6NJ_T0029013.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40526856 40541210 - MGP_C57BL6NJ_P0029013 Mat2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029014.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40526910 40531427 - Mat2b protein_coding retained_intron MGP_C57BL6NJ_T0029015.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40530894 40532017 - Mat2b protein_coding retained_intron MGP_C57BL6NJ_T0029016.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40531685 40541217 - Mat2b protein_coding retained_intron MGP_C57BL6NJ_T0029017.1 MGP_C57BL6NJ_G0018556.1 mouse_genomes_project 11 40533536 40544383 - Mat2b protein_coding retained_intron MGP_C57BL6NJ_T0017674.1 MGP_C57BL6NJ_G0015575.1 mouse_genomes_project 11 75031460 75034773 + 4930563E22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017675.1 MGP_C57BL6NJ_G0015575.1 mouse_genomes_project 11 75031494 75034767 + 4930563E22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0102412.1 MGP_C57BL6NJ_G0040330.1 mouse_genomes_project 11 86795423 86881532 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0032730.1 MGP_C57BL6NJ_G0019508.1 mouse_genomes_project 11 105619249 105620413 + MGP_C57BL6NJ_P0032730 Krtap4-9 protein_coding protein_coding MGP_C57BL6NJ_T0009876.1 MGP_C57BL6NJ_G0007961.1 mouse_genomes_project 11 56702386 56702442 + Mir7652 miRNA miRNA MGP_C57BL6NJ_T0034609.1 MGP_C57BL6NJ_G0019914.1 mouse_genomes_project 11 128984640 128991837 + MGP_C57BL6NJ_P0034609 Lrrc45 protein_coding protein_coding MGP_C57BL6NJ_T0034610.1 MGP_C57BL6NJ_G0019914.1 mouse_genomes_project 11 128984666 128991832 + MGP_C57BL6NJ_P0034610 Lrrc45 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034611.1 MGP_C57BL6NJ_G0019914.1 mouse_genomes_project 11 128984693 128986270 + MGP_C57BL6NJ_P0034611 Lrrc45 protein_coding protein_coding MGP_C57BL6NJ_T0034612.1 MGP_C57BL6NJ_G0019914.1 mouse_genomes_project 11 128988228 128990686 + Lrrc45 protein_coding retained_intron MGP_C57BL6NJ_T0034613.1 MGP_C57BL6NJ_G0019914.1 mouse_genomes_project 11 128990444 128991621 + Lrrc45 protein_coding retained_intron MGP_C57BL6NJ_T0032356.1 MGP_C57BL6NJ_G0019401.1 mouse_genomes_project 11 101744563 101747764 + Hoxb2 protein_coding retained_intron MGP_C57BL6NJ_T0032357.1 MGP_C57BL6NJ_G0019401.1 mouse_genomes_project 11 101745669 101748118 + MGP_C57BL6NJ_P0032357 Hoxb2 protein_coding protein_coding MGP_C57BL6NJ_T0031922.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90929596 90996336 - MGP_C57BL6NJ_P0031922 Cltc protein_coding protein_coding MGP_C57BL6NJ_T0031923.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90929900 90996272 - MGP_C57BL6NJ_P0031923 Cltc protein_coding protein_coding MGP_C57BL6NJ_T0031924.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90930562 90938943 - MGP_C57BL6NJ_P0031924 Cltc protein_coding protein_coding MGP_C57BL6NJ_T0031925.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90936183 90937676 - Cltc protein_coding processed_transcript MGP_C57BL6NJ_T0031926.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90958401 90961607 - Cltc protein_coding retained_intron MGP_C57BL6NJ_T0031927.1 MGP_C57BL6NJ_G0019286.1 mouse_genomes_project 11 90959321 90961576 - Cltc protein_coding processed_transcript MGP_C57BL6NJ_T0012952.1 MGP_C57BL6NJ_G0010997.1 mouse_genomes_project 11 70451017 70451732 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032300.1 MGP_C57BL6NJ_G0019380.1 mouse_genomes_project 11 101015773 101074343 + MGP_C57BL6NJ_P0032300 Zfp652 protein_coding protein_coding MGP_C57BL6NJ_T0032301.1 MGP_C57BL6NJ_G0019380.1 mouse_genomes_project 11 101016672 101144335 + MGP_C57BL6NJ_P0032301 Zfp652 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032303.1 MGP_C57BL6NJ_G0019380.1 mouse_genomes_project 11 101049630 101074343 + MGP_C57BL6NJ_P0032303 Zfp652 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032304.1 MGP_C57BL6NJ_G0019380.1 mouse_genomes_project 11 101049697 101066701 + MGP_C57BL6NJ_P0032304 Zfp652 protein_coding protein_coding MGP_C57BL6NJ_T0033566.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113559097 113671381 - MGP_C57BL6NJ_P0033566 Smurf2 protein_coding protein_coding MGP_C57BL6NJ_T0033567.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113561056 113670941 - Smurf2 protein_coding processed_transcript MGP_C57BL6NJ_T0033568.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113561056 113671136 - MGP_C57BL6NJ_P0033568 Smurf2 protein_coding protein_coding MGP_C57BL6NJ_T0033569.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113561644 113671025 - MGP_C57BL6NJ_P0033569 Smurf2 protein_coding protein_coding MGP_C57BL6NJ_T0033570.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113564501 113568790 - Smurf2 protein_coding processed_transcript MGP_C57BL6NJ_T0033571.1 MGP_C57BL6NJ_G0019707.1 mouse_genomes_project 11 113570371 113579083 - Smurf2 protein_coding processed_transcript MGP_C57BL6NJ_T0028783.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28136696 28184752 + MGP_C57BL6NJ_P0028783 Smek2 protein_coding protein_coding MGP_C57BL6NJ_T0028784.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28136696 28173604 + MGP_C57BL6NJ_P0028784 Smek2 protein_coding protein_coding MGP_C57BL6NJ_T0028785.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28137685 28152287 + MGP_C57BL6NJ_P0028785 Smek2 protein_coding protein_coding MGP_C57BL6NJ_T0028786.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28161125 28165105 + Smek2 protein_coding processed_transcript MGP_C57BL6NJ_T0028787.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28161136 28173411 + MGP_C57BL6NJ_P0028787 Smek2 protein_coding protein_coding MGP_C57BL6NJ_T0028788.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28169551 28182511 + Smek2 protein_coding processed_transcript MGP_C57BL6NJ_T0028789.1 MGP_C57BL6NJ_G0018497.1 mouse_genomes_project 11 28177578 28184752 + MGP_C57BL6NJ_P0028789 Smek2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029458.1 MGP_C57BL6NJ_G0018679.1 mouse_genomes_project 11 54214296 54259894 - MGP_C57BL6NJ_P0029458 Hspa4 protein_coding protein_coding MGP_C57BL6NJ_T0029459.1 MGP_C57BL6NJ_G0018679.1 mouse_genomes_project 11 54219009 54223724 - Hspa4 protein_coding retained_intron MGP_C57BL6NJ_T0029460.1 MGP_C57BL6NJ_G0018679.1 mouse_genomes_project 11 54220729 54259848 - Hspa4 protein_coding processed_transcript MGP_C57BL6NJ_T0031757.1 MGP_C57BL6NJ_G0019253.1 mouse_genomes_project 11 87708726 87741260 + MGP_C57BL6NJ_P0031757 Heatr6 protein_coding protein_coding MGP_C57BL6NJ_T0031758.1 MGP_C57BL6NJ_G0019253.1 mouse_genomes_project 11 87708744 87739533 + Heatr6 protein_coding processed_transcript MGP_C57BL6NJ_T0031759.1 MGP_C57BL6NJ_G0019253.1 mouse_genomes_project 11 87709059 87712135 + Heatr6 protein_coding processed_transcript MGP_C57BL6NJ_T0031760.1 MGP_C57BL6NJ_G0019253.1 mouse_genomes_project 11 87717005 87721599 + Heatr6 protein_coding retained_intron MGP_C57BL6NJ_T0031761.1 MGP_C57BL6NJ_G0019253.1 mouse_genomes_project 11 87731971 87736429 + Heatr6 protein_coding processed_transcript MGP_C57BL6NJ_T0006471.1 MGP_C57BL6NJ_G0005395.1 mouse_genomes_project 11 92701325 92704948 + Gm44783 lincRNA lincRNA MGP_C57BL6NJ_T0006543.1 MGP_C57BL6NJ_G0005448.1 mouse_genomes_project 11 127344910 127349166 + lincRNA lincRNA MGP_C57BL6NJ_T0034702.1 MGP_C57BL6NJ_G0019935.1 mouse_genomes_project 11 129588349 129608246 + MGP_C57BL6NJ_P0034702 Narf protein_coding protein_coding MGP_C57BL6NJ_T0034703.1 MGP_C57BL6NJ_G0019935.1 mouse_genomes_project 11 129595654 129596565 + Narf protein_coding retained_intron MGP_C57BL6NJ_T0034704.1 MGP_C57BL6NJ_G0019935.1 mouse_genomes_project 11 129596136 129596928 + Narf protein_coding retained_intron MGP_C57BL6NJ_T0017726.1 MGP_C57BL6NJ_G0015606.1 mouse_genomes_project 11 111050684 111062287 - Gm22000 processed_transcript processed_transcript MGP_C57BL6NJ_T0099770.1 MGP_C57BL6NJ_G0037816.1 mouse_genomes_project 11 80282841 80282991 + Gm22611 snRNA snRNA MGP_C57BL6NJ_T0031396.1 MGP_C57BL6NJ_G0019152.1 mouse_genomes_project 11 81472275 81495718 + MGP_C57BL6NJ_P0031396 Flot2 protein_coding protein_coding MGP_C57BL6NJ_T0031397.1 MGP_C57BL6NJ_G0019152.1 mouse_genomes_project 11 81472275 81495718 + MGP_C57BL6NJ_P0031397 Flot2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031398.1 MGP_C57BL6NJ_G0019152.1 mouse_genomes_project 11 81472285 81495715 + MGP_C57BL6NJ_P0031398 Flot2 protein_coding protein_coding MGP_C57BL6NJ_T0031399.1 MGP_C57BL6NJ_G0019152.1 mouse_genomes_project 11 81472328 81495718 + MGP_C57BL6NJ_P0031399 Flot2 protein_coding protein_coding MGP_C57BL6NJ_T0031400.1 MGP_C57BL6NJ_G0019152.1 mouse_genomes_project 11 81474648 81495718 + Flot2 protein_coding processed_transcript MGP_C57BL6NJ_T0012980.1 MGP_C57BL6NJ_G0011025.1 mouse_genomes_project 11 80483326 80486728 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003433.1 MGP_C57BL6NJ_G0003159.1 mouse_genomes_project 11 104071643 104072653 + Gm12352 antisense antisense MGP_C57BL6NJ_T0034571.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128899533 128907370 - MGP_C57BL6NJ_P0034571 Pycr1 protein_coding protein_coding MGP_C57BL6NJ_T0034572.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128903115 128907448 - MGP_C57BL6NJ_P0034572 Pycr1 protein_coding protein_coding MGP_C57BL6NJ_T0034573.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128904923 128907343 - MGP_C57BL6NJ_P0034573 Pycr1 protein_coding protein_coding MGP_C57BL6NJ_T0034574.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128905177 128907404 - MGP_C57BL6NJ_P0034574 Pycr1 protein_coding protein_coding MGP_C57BL6NJ_T0034575.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128905413 128907469 - MGP_C57BL6NJ_P0034575 Pycr1 protein_coding protein_coding MGP_C57BL6NJ_T0034576.1 MGP_C57BL6NJ_G0019909.1 mouse_genomes_project 11 128906444 128907404 - Pycr1 protein_coding retained_intron MGP_C57BL6NJ_T0031218.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79262343 79406613 - MGP_C57BL6NJ_P0031218 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031219.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79262413 79406590 - MGP_C57BL6NJ_P0031219 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031220.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79262414 79406583 - MGP_C57BL6NJ_P0031220 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031221.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79279468 79309892 - Vps53 protein_coding retained_intron MGP_C57BL6NJ_T0031222.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79280407 79406465 - MGP_C57BL6NJ_P0031222 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031223.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79280412 79406465 - MGP_C57BL6NJ_P0031223 Vps53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031224.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79280412 79406482 - MGP_C57BL6NJ_P0031224 Vps53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031225.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79336266 79406498 - MGP_C57BL6NJ_P0031225 Vps53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031226.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79336881 79392029 - MGP_C57BL6NJ_P0031226 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031228.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79340649 79406553 - Vps53 protein_coding retained_intron MGP_C57BL6NJ_T0031229.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79340765 79401601 - Vps53 protein_coding processed_transcript MGP_C57BL6NJ_T0031230.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79340770 79359395 - Vps53 protein_coding processed_transcript MGP_C57BL6NJ_T0031231.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79355078 79380801 - Vps53 protein_coding processed_transcript MGP_C57BL6NJ_T0031232.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79356845 79406600 - MGP_C57BL6NJ_P0031232 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0031233.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79396329 79406578 - Vps53 protein_coding processed_transcript MGP_C57BL6NJ_T0031234.1 MGP_C57BL6NJ_G0019118.1 mouse_genomes_project 11 79402767 79406604 - MGP_C57BL6NJ_P0031234 Vps53 protein_coding protein_coding MGP_C57BL6NJ_T0033348.1 MGP_C57BL6NJ_G0019654.1 mouse_genomes_project 11 109735669 109784168 - MGP_C57BL6NJ_P0033348 Plekhm1 protein_coding protein_coding MGP_C57BL6NJ_T0033349.1 MGP_C57BL6NJ_G0019654.1 mouse_genomes_project 11 109738035 109766250 - MGP_C57BL6NJ_P0033349 Plekhm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003404.1 MGP_C57BL6NJ_G0003136.1 mouse_genomes_project 11 92145052 92150516 - Gm11505 antisense antisense MGP_C57BL6NJ_T0017681.1 MGP_C57BL6NJ_G0015579.1 mouse_genomes_project 11 78762221 78767328 - 4931413K12Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0028768.1 MGP_C57BL6NJ_G0018493.1 mouse_genomes_project 11 27273543 27274307 - MGP_C57BL6NJ_P0028768 Gm6685 protein_coding protein_coding MGP_C57BL6NJ_T0012911.1 MGP_C57BL6NJ_G0010956.1 mouse_genomes_project 11 55068177 55068620 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028605.1 MGP_C57BL6NJ_G0018456.1 mouse_genomes_project 11 18349173 18407751 - MGP_C57BL6NJ_P0028605 Actr2 protein_coding protein_coding MGP_C57BL6NJ_T0028606.1 MGP_C57BL6NJ_G0018456.1 mouse_genomes_project 11 18368912 18407705 - Actr2 protein_coding processed_transcript MGP_C57BL6NJ_T0028607.1 MGP_C57BL6NJ_G0018456.1 mouse_genomes_project 11 18391232 18407747 - Actr2 protein_coding retained_intron MGP_C57BL6NJ_T0033284.1 MGP_C57BL6NJ_G0019642.1 mouse_genomes_project 11 109253638 109261063 - MGP_C57BL6NJ_P0033284 C1ql1 protein_coding protein_coding MGP_C57BL6NJ_T0009888.1 MGP_C57BL6NJ_G0007973.1 mouse_genomes_project 11 71494566 71494671 - Mir3062 miRNA miRNA MGP_C57BL6NJ_T0030814.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578468 73687030 + MGP_C57BL6NJ_P0030814 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030815.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578472 73685228 + Rabep1 protein_coding retained_intron MGP_C57BL6NJ_T0030816.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578482 73631562 + MGP_C57BL6NJ_P0030816 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030817.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578489 73685223 + MGP_C57BL6NJ_P0030817 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030818.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578615 73684865 + MGP_C57BL6NJ_P0030818 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030819.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578632 73684571 + MGP_C57BL6NJ_P0030819 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030820.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578665 73684408 + MGP_C57BL6NJ_P0030820 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0030821.1 MGP_C57BL6NJ_G0019008.1 mouse_genomes_project 11 73578665 73684408 + MGP_C57BL6NJ_P0030821 Rabep1 protein_coding protein_coding MGP_C57BL6NJ_T0033993.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123627087 123629629 - Recql5 protein_coding retained_intron MGP_C57BL6NJ_T0033994.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123627087 123671120 - MGP_C57BL6NJ_P0033994 Recql5 protein_coding protein_coding MGP_C57BL6NJ_T0033995.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123627087 123671120 - MGP_C57BL6NJ_P0033995 Recql5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033996.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123629907 123665028 - MGP_C57BL6NJ_P0033996 Recql5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033997.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123630757 123671120 - Recql5 protein_coding retained_intron MGP_C57BL6NJ_T0033998.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123631301 123641737 - Recql5 protein_coding processed_transcript MGP_C57BL6NJ_T0034003.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123650490 123671120 - MGP_C57BL6NJ_P0034003 Recql5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034004.1 MGP_C57BL6NJ_G0019797.1 mouse_genomes_project 11 123663084 123665196 - Recql5 protein_coding retained_intron MGP_C57BL6NJ_T0029717.1 MGP_C57BL6NJ_G0018751.1 mouse_genomes_project 11 60077939 60083810 - MGP_C57BL6NJ_P0029717 Olfr328 protein_coding protein_coding MGP_C57BL6NJ_T0029718.1 MGP_C57BL6NJ_G0018751.1 mouse_genomes_project 11 60077939 60078872 - MGP_C57BL6NJ_P0029718 Olfr328 protein_coding protein_coding MGP_C57BL6NJ_T0032810.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106448582 106501656 - MGP_C57BL6NJ_P0032810 Acly protein_coding protein_coding MGP_C57BL6NJ_T0032811.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106448585 106501656 - MGP_C57BL6NJ_P0032811 Acly protein_coding protein_coding MGP_C57BL6NJ_T0032812.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106448587 106497254 - MGP_C57BL6NJ_P0032812 Acly protein_coding protein_coding MGP_C57BL6NJ_T0032813.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106449455 106451769 - Acly protein_coding processed_transcript MGP_C57BL6NJ_T0032814.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106454531 106466472 - Acly protein_coding processed_transcript MGP_C57BL6NJ_T0032815.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106470234 106471085 - Acly protein_coding processed_transcript MGP_C57BL6NJ_T0032816.1 MGP_C57BL6NJ_G0019549.1 mouse_genomes_project 11 106472565 106501525 - MGP_C57BL6NJ_P0032816 Acly protein_coding protein_coding MGP_C57BL6NJ_T0029661.1 MGP_C57BL6NJ_G0018730.1 mouse_genomes_project 11 59018701 59177552 + MGP_C57BL6NJ_P0029661 Galnt10 protein_coding protein_coding MGP_C57BL6NJ_T0029662.1 MGP_C57BL6NJ_G0018730.1 mouse_genomes_project 11 59018724 59114537 + MGP_C57BL6NJ_P0029662 Galnt10 protein_coding protein_coding MGP_C57BL6NJ_T0012819.1 MGP_C57BL6NJ_G0010864.1 mouse_genomes_project 11 19893215 19893428 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031274.1 MGP_C57BL6NJ_G0019128.1 mouse_genomes_project 11 79970013 79995625 + MGP_C57BL6NJ_P0031274 Tusc5 protein_coding protein_coding MGP_C57BL6NJ_T0029171.1 MGP_C57BL6NJ_G0018599.1 mouse_genomes_project 11 49270161 49281142 - MGP_C57BL6NJ_P0029171 Trim41 protein_coding protein_coding MGP_C57BL6NJ_T0029172.1 MGP_C57BL6NJ_G0018599.1 mouse_genomes_project 11 49272143 49276153 - MGP_C57BL6NJ_P0029172 Trim41 protein_coding protein_coding MGP_C57BL6NJ_T0029173.1 MGP_C57BL6NJ_G0018599.1 mouse_genomes_project 11 49272854 49280742 - MGP_C57BL6NJ_P0029173 Trim41 protein_coding protein_coding MGP_C57BL6NJ_T0029174.1 MGP_C57BL6NJ_G0018599.1 mouse_genomes_project 11 49272956 49279989 - MGP_C57BL6NJ_P0029174 Trim41 protein_coding protein_coding MGP_C57BL6NJ_T0006368.1 MGP_C57BL6NJ_G0005314.1 mouse_genomes_project 11 28546689 28548568 + Gm12088 lincRNA lincRNA MGP_C57BL6NJ_T0028831.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28712723 29020663 - MGP_C57BL6NJ_P0028831 Eml6 protein_coding protein_coding MGP_C57BL6NJ_T0028832.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28713809 28744558 - Eml6 protein_coding retained_intron MGP_C57BL6NJ_T0028833.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28716324 28721113 - Eml6 protein_coding retained_intron MGP_C57BL6NJ_T0028834.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28717139 28719166 - Eml6 protein_coding retained_intron MGP_C57BL6NJ_T0028835.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28719603 28735356 - MGP_C57BL6NJ_P0028835 Eml6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028836.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28782282 28783393 - Eml6 protein_coding retained_intron MGP_C57BL6NJ_T0028837.1 MGP_C57BL6NJ_G0018505.1 mouse_genomes_project 11 28789636 28801956 - MGP_C57BL6NJ_P0028837 Eml6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032697.1 MGP_C57BL6NJ_G0019479.1 mouse_genomes_project 11 105063899 105070165 - MGP_C57BL6NJ_P0032697 Krt24 protein_coding protein_coding MGP_C57BL6NJ_T0031084.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77857253 77904112 + MGP_C57BL6NJ_P0031084 Mettl16 protein_coding protein_coding MGP_C57BL6NJ_T0031085.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77857253 77914743 + MGP_C57BL6NJ_P0031085 Mettl16 protein_coding protein_coding MGP_C57BL6NJ_T0031086.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77857339 77860045 + MGP_C57BL6NJ_P0031086 Mettl16 protein_coding protein_coding MGP_C57BL6NJ_T0031087.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77857348 77904112 + MGP_C57BL6NJ_P0031087 Mettl16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031088.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77889716 77903181 + Mettl16 protein_coding retained_intron MGP_C57BL6NJ_T0031089.1 MGP_C57BL6NJ_G0019089.1 mouse_genomes_project 11 77894921 77903729 + Mettl16 protein_coding processed_transcript MGP_C57BL6NJ_T0034088.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124085882 124104665 - Exoc7 protein_coding processed_transcript MGP_C57BL6NJ_T0034089.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124085882 124104665 - MGP_C57BL6NJ_P0034089 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0034090.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124085882 124104665 - MGP_C57BL6NJ_P0034090 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0034091.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124085882 124104665 - MGP_C57BL6NJ_P0034091 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0034092.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124086944 124088362 - Exoc7 protein_coding processed_transcript MGP_C57BL6NJ_T0034093.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124086990 124089352 - Exoc7 protein_coding processed_transcript MGP_C57BL6NJ_T0034094.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124090453 124095693 - Exoc7 protein_coding processed_transcript MGP_C57BL6NJ_T0034095.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124093606 124104583 - MGP_C57BL6NJ_P0034095 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0034096.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124102542 124104658 - MGP_C57BL6NJ_P0034096 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0034097.1 MGP_C57BL6NJ_G0019816.1 mouse_genomes_project 11 124102961 124105164 - MGP_C57BL6NJ_P0034097 Exoc7 protein_coding protein_coding MGP_C57BL6NJ_T0029897.1 MGP_C57BL6NJ_G0018810.1 mouse_genomes_project 11 62242804 62250059 + Drg2 protein_coding retained_intron MGP_C57BL6NJ_T0029898.1 MGP_C57BL6NJ_G0018810.1 mouse_genomes_project 11 62242804 62256959 + MGP_C57BL6NJ_P0029898 Drg2 protein_coding protein_coding MGP_C57BL6NJ_T0029899.1 MGP_C57BL6NJ_G0018810.1 mouse_genomes_project 11 62242837 62250857 + Drg2 protein_coding retained_intron MGP_C57BL6NJ_T0029900.1 MGP_C57BL6NJ_G0018810.1 mouse_genomes_project 11 62247634 62248541 + Drg2 protein_coding retained_intron MGP_C57BL6NJ_T0029901.1 MGP_C57BL6NJ_G0018810.1 mouse_genomes_project 11 62249712 62251252 + Drg2 protein_coding retained_intron MGP_C57BL6NJ_T0006525.1 MGP_C57BL6NJ_G0005434.1 mouse_genomes_project 11 121837298 121879820 - 4932435O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006526.1 MGP_C57BL6NJ_G0005434.1 mouse_genomes_project 11 121837540 121849449 - 4932435O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0034644.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129112905 129131607 - MGP_C57BL6NJ_P0034644 Fasn protein_coding protein_coding MGP_C57BL6NJ_T0034645.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129114164 129131155 - MGP_C57BL6NJ_P0034645 Fasn protein_coding protein_coding MGP_C57BL6NJ_T0034646.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129114606 129115665 - Fasn protein_coding retained_intron MGP_C57BL6NJ_T0034647.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129115623 129116761 - Fasn protein_coding retained_intron MGP_C57BL6NJ_T0034648.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129121554 129122515 - Fasn protein_coding retained_intron MGP_C57BL6NJ_T0034649.1 MGP_C57BL6NJ_G0019922.1 mouse_genomes_project 11 129129831 129130840 - MGP_C57BL6NJ_P0034649 Fasn protein_coding protein_coding MGP_C57BL6NJ_T0031090.1 MGP_C57BL6NJ_G0019090.1 mouse_genomes_project 11 77917546 77930459 + MGP_C57BL6NJ_P0031090 Mnt protein_coding protein_coding MGP_C57BL6NJ_T0031091.1 MGP_C57BL6NJ_G0019090.1 mouse_genomes_project 11 77923437 77924835 + Mnt protein_coding retained_intron MGP_C57BL6NJ_T0031092.1 MGP_C57BL6NJ_G0019090.1 mouse_genomes_project 11 77924579 77930867 + MGP_C57BL6NJ_P0031092 Mnt protein_coding protein_coding MGP_C57BL6NJ_T0034009.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123711979 123749987 + MGP_C57BL6NJ_P0034009 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034010.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123711995 123749986 + MGP_C57BL6NJ_P0034010 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034011.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123711995 123749986 + MGP_C57BL6NJ_P0034011 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034012.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123712113 123735192 + Itgb4 protein_coding processed_transcript MGP_C57BL6NJ_T0034013.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123712249 123749987 + MGP_C57BL6NJ_P0034013 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034014.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123715056 123749987 + MGP_C57BL6NJ_P0034014 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034015.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123715056 123749987 + MGP_C57BL6NJ_P0034015 Itgb4 protein_coding protein_coding MGP_C57BL6NJ_T0034016.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123727201 123728406 + Itgb4 protein_coding processed_transcript MGP_C57BL6NJ_T0034017.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123728307 123729329 + Itgb4 protein_coding processed_transcript MGP_C57BL6NJ_T0034018.1 MGP_C57BL6NJ_G0019801.1 mouse_genomes_project 11 123733363 123734762 + Itgb4 protein_coding processed_transcript MGP_C57BL6NJ_T0003343.1 MGP_C57BL6NJ_G0003088.1 mouse_genomes_project 11 64572212 64573207 - Gm12279 antisense antisense MGP_C57BL6NJ_T0032927.1 MGP_C57BL6NJ_G0019573.1 mouse_genomes_project 11 107157538 107164868 + MGP_C57BL6NJ_P0032927 Tubg1 protein_coding protein_coding MGP_C57BL6NJ_T0012782.1 MGP_C57BL6NJ_G0010827.1 mouse_genomes_project 11 10695120 10695838 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012976.1 MGP_C57BL6NJ_G0011021.1 mouse_genomes_project 11 77812305 77812473 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029335.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51538670 51554206 - MGP_C57BL6NJ_P0029335 Zfp454 protein_coding protein_coding MGP_C57BL6NJ_T0029336.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51538670 51554264 - MGP_C57BL6NJ_P0029336 Zfp454 protein_coding protein_coding MGP_C57BL6NJ_T0029337.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51538943 51554273 - MGP_C57BL6NJ_P0029337 Zfp454 protein_coding protein_coding MGP_C57BL6NJ_T0029338.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51540111 51554414 - Zfp454 protein_coding processed_transcript MGP_C57BL6NJ_T0029339.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51543832 51554414 - MGP_C57BL6NJ_P0029339 Zfp454 protein_coding protein_coding MGP_C57BL6NJ_T0029340.1 MGP_C57BL6NJ_G0018644.1 mouse_genomes_project 11 51544044 51554293 - Zfp454 protein_coding processed_transcript MGP_C57BL6NJ_T0012988.1 MGP_C57BL6NJ_G0011033.1 mouse_genomes_project 11 82214732 82215756 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012830.1 MGP_C57BL6NJ_G0010875.1 mouse_genomes_project 11 22588627 22588886 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006405.1 MGP_C57BL6NJ_G0005346.1 mouse_genomes_project 11 58937431 58939515 + Gm12243 lincRNA lincRNA MGP_C57BL6NJ_T0032263.1 MGP_C57BL6NJ_G0019371.1 mouse_genomes_project 11 100392318 100398135 - MGP_C57BL6NJ_P0032263 Dlx4 protein_coding protein_coding MGP_C57BL6NJ_T0032264.1 MGP_C57BL6NJ_G0019371.1 mouse_genomes_project 11 100395498 100397673 - Dlx4 protein_coding processed_transcript MGP_C57BL6NJ_T0034081.1 MGP_C57BL6NJ_G0019813.1 mouse_genomes_project 11 124006939 124024439 - MGP_C57BL6NJ_P0034081 Evpl protein_coding protein_coding MGP_C57BL6NJ_T0006485.1 MGP_C57BL6NJ_G0005405.1 mouse_genomes_project 11 100957786 100960554 + Gm26830 lincRNA lincRNA MGP_C57BL6NJ_T0033759.1 MGP_C57BL6NJ_G0019750.1 mouse_genomes_project 11 122153727 122209300 + MGP_C57BL6NJ_P0033759 Ttyh2 protein_coding protein_coding MGP_C57BL6NJ_T0033760.1 MGP_C57BL6NJ_G0019750.1 mouse_genomes_project 11 122153812 122177981 + Ttyh2 protein_coding processed_transcript MGP_C57BL6NJ_T0030993.1 MGP_C57BL6NJ_G0019047.1 mouse_genomes_project 11 76115103 76130418 - MGP_C57BL6NJ_P0030993 Ctns protein_coding protein_coding MGP_C57BL6NJ_T0030994.1 MGP_C57BL6NJ_G0019047.1 mouse_genomes_project 11 76115104 76130418 - MGP_C57BL6NJ_P0030994 Ctns protein_coding protein_coding MGP_C57BL6NJ_T0030995.1 MGP_C57BL6NJ_G0019047.1 mouse_genomes_project 11 76117859 76120314 - Ctns protein_coding retained_intron MGP_C57BL6NJ_T0030996.1 MGP_C57BL6NJ_G0019047.1 mouse_genomes_project 11 76122818 76130397 - Ctns protein_coding retained_intron MGP_C57BL6NJ_T0030997.1 MGP_C57BL6NJ_G0019047.1 mouse_genomes_project 11 76123220 76130371 - Ctns protein_coding processed_transcript MGP_C57BL6NJ_T0028946.1 MGP_C57BL6NJ_G0018536.1 mouse_genomes_project 11 32425689 32455192 - MGP_C57BL6NJ_P0028946 Fgf18 protein_coding protein_coding MGP_C57BL6NJ_T0003305.1 MGP_C57BL6NJ_G0003056.1 mouse_genomes_project 11 51515906 51517157 - Gm12660 antisense antisense MGP_C57BL6NJ_T0034721.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129815302 129992653 + MGP_C57BL6NJ_P0034721 Tbcd protein_coding protein_coding MGP_C57BL6NJ_T0034722.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129858741 129867367 + MGP_C57BL6NJ_P0034722 Tbcd protein_coding protein_coding MGP_C57BL6NJ_T0034723.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129870351 129950020 + MGP_C57BL6NJ_P0034723 Tbcd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034725.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129917147 129966041 + Tbcd protein_coding processed_transcript MGP_C57BL6NJ_T0034726.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129924001 129966018 + Tbcd protein_coding retained_intron MGP_C57BL6NJ_T0034727.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129973950 129992652 + Tbcd protein_coding retained_intron MGP_C57BL6NJ_T0034728.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129977253 129992652 + Tbcd protein_coding processed_transcript MGP_C57BL6NJ_T0034729.1 MGP_C57BL6NJ_G0019941.1 mouse_genomes_project 11 129977339 129992652 + Tbcd protein_coding processed_transcript MGP_C57BL6NJ_T0003292.1 MGP_C57BL6NJ_G0003043.1 mouse_genomes_project 11 35552573 35558605 + antisense antisense MGP_C57BL6NJ_T0033831.1 MGP_C57BL6NJ_G0019769.1 mouse_genomes_project 11 122897294 122914629 - MGP_C57BL6NJ_P0033831 Grin2c protein_coding protein_coding MGP_C57BL6NJ_T0033832.1 MGP_C57BL6NJ_G0019769.1 mouse_genomes_project 11 122897294 122916443 - MGP_C57BL6NJ_P0033832 Grin2c protein_coding protein_coding MGP_C57BL6NJ_T0012993.1 MGP_C57BL6NJ_G0011038.1 mouse_genomes_project 11 83517258 83517405 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033415.1 MGP_C57BL6NJ_G0019673.1 mouse_genomes_project 11 111693404 111708930 + MGP_C57BL6NJ_P0033415 Mettl2 protein_coding protein_coding MGP_C57BL6NJ_T0033416.1 MGP_C57BL6NJ_G0019673.1 mouse_genomes_project 11 111693458 111708930 + Mettl2 protein_coding processed_transcript MGP_C57BL6NJ_T0033417.1 MGP_C57BL6NJ_G0019673.1 mouse_genomes_project 11 111699426 111707517 + Mettl2 protein_coding processed_transcript MGP_C57BL6NJ_T0033418.1 MGP_C57BL6NJ_G0019673.1 mouse_genomes_project 11 111699437 111702634 + Mettl2 protein_coding processed_transcript MGP_C57BL6NJ_T0033419.1 MGP_C57BL6NJ_G0019673.1 mouse_genomes_project 11 111704540 111708930 + Mettl2 protein_coding processed_transcript MGP_C57BL6NJ_T0033464.1 MGP_C57BL6NJ_G0019683.1 mouse_genomes_project 11 112661879 112684339 + MGP_C57BL6NJ_P0033464 Dcaf7 protein_coding protein_coding MGP_C57BL6NJ_T0033465.1 MGP_C57BL6NJ_G0019683.1 mouse_genomes_project 11 112661907 112673688 + Dcaf7 protein_coding retained_intron MGP_C57BL6NJ_T0031041.1 MGP_C57BL6NJ_G0019069.1 mouse_genomes_project 11 76900472 76901411 - MGP_C57BL6NJ_P0031041 Olfr395 protein_coding protein_coding MGP_C57BL6NJ_T0029278.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50826599 50839287 - MGP_C57BL6NJ_P0029278 Sqstm1 protein_coding protein_coding MGP_C57BL6NJ_T0029279.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50827385 50839323 - MGP_C57BL6NJ_P0029279 Sqstm1 protein_coding protein_coding MGP_C57BL6NJ_T0029280.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50827400 50830188 - MGP_C57BL6NJ_P0029280 Sqstm1 protein_coding protein_coding MGP_C57BL6NJ_T0029281.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50827844 50839261 - MGP_C57BL6NJ_P0029281 Sqstm1 protein_coding protein_coding MGP_C57BL6NJ_T0029282.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50829545 50834596 - Sqstm1 protein_coding retained_intron MGP_C57BL6NJ_T0029283.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50829676 50830352 - Sqstm1 protein_coding retained_intron MGP_C57BL6NJ_T0029284.1 MGP_C57BL6NJ_G0018632.1 mouse_genomes_project 11 50834174 50835815 - Sqstm1 protein_coding retained_intron MGP_C57BL6NJ_T0030505.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72367772 72382010 + MGP_C57BL6NJ_P0030505 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030506.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72367772 72385824 + MGP_C57BL6NJ_P0030506 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030507.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72367822 72383749 + MGP_C57BL6NJ_P0030507 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030508.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72367844 72380110 + MGP_C57BL6NJ_P0030508 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030509.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72368277 72377839 + MGP_C57BL6NJ_P0030509 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030510.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72368372 72377823 + MGP_C57BL6NJ_P0030510 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030511.1 MGP_C57BL6NJ_G0018944.1 mouse_genomes_project 11 72377206 72381474 + MGP_C57BL6NJ_P0030511 Zbtb4 protein_coding protein_coding MGP_C57BL6NJ_T0030928.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75284603 75295017 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030929.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75284603 75295017 + MGP_C57BL6NJ_P0030929 Mybbp1a protein_coding protein_coding MGP_C57BL6NJ_T0030930.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75284605 75294478 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030931.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75284625 75286822 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030932.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75287020 75287812 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030933.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75291465 75294254 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030934.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75292886 75293955 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0030935.1 MGP_C57BL6NJ_G0019031.1 mouse_genomes_project 11 75293822 75294351 + Mybbp1a protein_coding retained_intron MGP_C57BL6NJ_T0032150.1 MGP_C57BL6NJ_G0019345.1 mouse_genomes_project 11 99352083 99356124 + MGP_C57BL6NJ_P0032150 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032151.1 MGP_C57BL6NJ_G0019345.1 mouse_genomes_project 11 99352116 99356124 + MGP_C57BL6NJ_P0032151 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032152.1 MGP_C57BL6NJ_G0019345.1 mouse_genomes_project 11 99354790 99356124 + MGP_C57BL6NJ_P0032152 protein_coding protein_coding MGP_C57BL6NJ_T0034421.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128204636 128248786 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0034422.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128204636 128209732 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0034423.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128204636 128248689 - MGP_C57BL6NJ_P0034423 Aatk protein_coding protein_coding MGP_C57BL6NJ_T0034424.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128206539 128223213 - MGP_C57BL6NJ_P0034424 Aatk protein_coding protein_coding MGP_C57BL6NJ_T0034425.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128209718 128216999 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0034426.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128211013 128217258 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0034427.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128213637 128216974 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0034428.1 MGP_C57BL6NJ_G0019880.1 mouse_genomes_project 11 128216839 128220306 - Aatk protein_coding processed_transcript MGP_C57BL6NJ_T0031632.1 MGP_C57BL6NJ_G0019209.1 mouse_genomes_project 11 84543542 84557003 + MGP_C57BL6NJ_P0031632 Spaca3 protein_coding protein_coding MGP_C57BL6NJ_T0031633.1 MGP_C57BL6NJ_G0019209.1 mouse_genomes_project 11 84543549 84557007 + MGP_C57BL6NJ_P0031633 Spaca3 protein_coding protein_coding MGP_C57BL6NJ_T0030251.1 MGP_C57BL6NJ_G0018889.1 mouse_genomes_project 11 70328786 70351186 - Cfap52 protein_coding processed_transcript MGP_C57BL6NJ_T0030252.1 MGP_C57BL6NJ_G0018889.1 mouse_genomes_project 11 70328788 70373116 - MGP_C57BL6NJ_P0030252 Cfap52 protein_coding protein_coding MGP_C57BL6NJ_T0030253.1 MGP_C57BL6NJ_G0018889.1 mouse_genomes_project 11 70328931 70336572 - Cfap52 protein_coding processed_transcript MGP_C57BL6NJ_T0030254.1 MGP_C57BL6NJ_G0018889.1 mouse_genomes_project 11 70344523 70373125 - MGP_C57BL6NJ_P0030254 Cfap52 protein_coding protein_coding MGP_C57BL6NJ_T0012817.1 MGP_C57BL6NJ_G0010862.1 mouse_genomes_project 11 19715686 19715866 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031744.1 MGP_C57BL6NJ_G0019245.1 mouse_genomes_project 11 87518257 87523975 - MGP_C57BL6NJ_P0031744 Ccl9 protein_coding protein_coding MGP_C57BL6NJ_T0031745.1 MGP_C57BL6NJ_G0019245.1 mouse_genomes_project 11 87520656 87522481 - Ccl9 protein_coding processed_transcript MGP_C57BL6NJ_T0099796.1 MGP_C57BL6NJ_G0037842.1 mouse_genomes_project 11 107526890 107527070 - Gm25475 snRNA snRNA MGP_C57BL6NJ_T0034604.1 MGP_C57BL6NJ_G0019913.1 mouse_genomes_project 11 128978879 128979921 - protein_coding processed_transcript MGP_C57BL6NJ_T0034605.1 MGP_C57BL6NJ_G0019913.1 mouse_genomes_project 11 128978879 128984454 - MGP_C57BL6NJ_P0034605 protein_coding protein_coding MGP_C57BL6NJ_T0034606.1 MGP_C57BL6NJ_G0019913.1 mouse_genomes_project 11 128978879 128984448 - MGP_C57BL6NJ_P0034606 protein_coding protein_coding MGP_C57BL6NJ_T0034607.1 MGP_C57BL6NJ_G0019913.1 mouse_genomes_project 11 128978879 128984448 - MGP_C57BL6NJ_P0034607 protein_coding protein_coding MGP_C57BL6NJ_T0034608.1 MGP_C57BL6NJ_G0019913.1 mouse_genomes_project 11 128978880 128984454 - MGP_C57BL6NJ_P0034608 protein_coding protein_coding MGP_C57BL6NJ_T0006373.1 MGP_C57BL6NJ_G0005317.1 mouse_genomes_project 11 30985699 30991350 + Gm12107 lincRNA lincRNA MGP_C57BL6NJ_T0006507.1 MGP_C57BL6NJ_G0005420.1 mouse_genomes_project 11 114341177 114358304 - C330019F10Rik lincRNA lincRNA MGP_C57BL6NJ_T0032294.1 MGP_C57BL6NJ_G0019378.1 mouse_genomes_project 11 100842742 100861943 - MGP_C57BL6NJ_P0032294 Ngfr protein_coding protein_coding MGP_C57BL6NJ_T0034678.1 MGP_C57BL6NJ_G0019928.1 mouse_genomes_project 11 129399398 129414784 - MGP_C57BL6NJ_P0034678 Sectm1a protein_coding protein_coding MGP_C57BL6NJ_T0034679.1 MGP_C57BL6NJ_G0019928.1 mouse_genomes_project 11 129399398 129414865 - MGP_C57BL6NJ_P0034679 Sectm1a protein_coding protein_coding MGP_C57BL6NJ_T0034680.1 MGP_C57BL6NJ_G0019928.1 mouse_genomes_project 11 129399908 129414781 - MGP_C57BL6NJ_P0034680 Sectm1a protein_coding protein_coding MGP_C57BL6NJ_T0034681.1 MGP_C57BL6NJ_G0019928.1 mouse_genomes_project 11 129399926 129414775 - MGP_C57BL6NJ_P0034681 Sectm1a protein_coding protein_coding MGP_C57BL6NJ_T0034682.1 MGP_C57BL6NJ_G0019928.1 mouse_genomes_project 11 129401027 129414770 - Sectm1a protein_coding processed_transcript MGP_C57BL6NJ_T0033361.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110235455 110381894 - MGP_C57BL6NJ_P0033361 Nsf protein_coding protein_coding MGP_C57BL6NJ_T0033362.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110236598 110241105 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033363.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110236607 110237774 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033364.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110263193 110287888 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033365.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110277034 110288010 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033366.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110299195 110381862 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033367.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110328101 110381862 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033368.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110329128 110363969 - MGP_C57BL6NJ_P0033368 Nsf protein_coding protein_coding MGP_C57BL6NJ_T0033369.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110329232 110346298 - Nsf protein_coding retained_intron MGP_C57BL6NJ_T0033370.1 MGP_C57BL6NJ_G0019662.1 mouse_genomes_project 11 110346294 110363969 - MGP_C57BL6NJ_P0033370 Nsf protein_coding protein_coding MGP_C57BL6NJ_T0029331.1 MGP_C57BL6NJ_G0018643.1 mouse_genomes_project 11 51515259 51517013 + Grm6 protein_coding processed_transcript MGP_C57BL6NJ_T0029332.1 MGP_C57BL6NJ_G0018643.1 mouse_genomes_project 11 51515259 51532346 + MGP_C57BL6NJ_P0029332 Grm6 protein_coding protein_coding MGP_C57BL6NJ_T0029333.1 MGP_C57BL6NJ_G0018643.1 mouse_genomes_project 11 51515560 51532317 + MGP_C57BL6NJ_P0029333 Grm6 protein_coding protein_coding MGP_C57BL6NJ_T0029334.1 MGP_C57BL6NJ_G0018643.1 mouse_genomes_project 11 51521759 51532348 + Grm6 protein_coding processed_transcript MGP_C57BL6NJ_T0028666.1 MGP_C57BL6NJ_G0018471.1 mouse_genomes_project 11 21316786 21421895 - MGP_C57BL6NJ_P0028666 Gm12057 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102747.1 MGP_C57BL6NJ_G0040542.1 mouse_genomes_project 11 76886905 76886946 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098967.1 MGP_C57BL6NJ_G0037031.1 mouse_genomes_project 11 89955259 89955375 + Gm23473 rRNA rRNA MGP_C57BL6NJ_T0003264.1 MGP_C57BL6NJ_G0003022.1 mouse_genomes_project 11 2621342 2628255 + Gm11963 antisense antisense MGP_C57BL6NJ_T0000971.1 MGP_C57BL6NJ_G0000881.1 mouse_genomes_project 11 16565214 16565809 + TEC TEC MGP_C57BL6NJ_T0032418.1 MGP_C57BL6NJ_G0019413.1 mouse_genomes_project 11 102491837 102495858 + MGP_C57BL6NJ_P0032418 Scrn2 protein_coding protein_coding MGP_C57BL6NJ_T0032419.1 MGP_C57BL6NJ_G0019413.1 mouse_genomes_project 11 102491851 102493106 + Scrn2 protein_coding retained_intron MGP_C57BL6NJ_T0032420.1 MGP_C57BL6NJ_G0019413.1 mouse_genomes_project 11 102491900 102495850 + Scrn2 protein_coding retained_intron MGP_C57BL6NJ_T0032421.1 MGP_C57BL6NJ_G0019413.1 mouse_genomes_project 11 102492033 102494176 + MGP_C57BL6NJ_P0032421 Scrn2 protein_coding protein_coding MGP_C57BL6NJ_T0032266.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100529334 100569370 - MGP_C57BL6NJ_P0032266 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032267.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100529334 100569370 - MGP_C57BL6NJ_P0032267 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032268.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100529334 100568726 - MGP_C57BL6NJ_P0032268 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032269.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100529334 100568726 - MGP_C57BL6NJ_P0032269 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032270.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100529334 100569325 - MGP_C57BL6NJ_P0032270 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032271.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100530398 100536970 - MGP_C57BL6NJ_P0032271 Kat7 protein_coding protein_coding MGP_C57BL6NJ_T0032272.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100536977 100569313 - Kat7 protein_coding processed_transcript MGP_C57BL6NJ_T0032273.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100539216 100548094 - Kat7 protein_coding processed_transcript MGP_C57BL6NJ_T0032274.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100559726 100569332 - Kat7 protein_coding processed_transcript MGP_C57BL6NJ_T0032275.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100561368 100568637 - Kat7 protein_coding processed_transcript MGP_C57BL6NJ_T0032276.1 MGP_C57BL6NJ_G0019373.1 mouse_genomes_project 11 100564280 100568693 - Kat7 protein_coding processed_transcript MGP_C57BL6NJ_T0003382.1 MGP_C57BL6NJ_G0003120.1 mouse_genomes_project 11 82559946 82569718 + Gm11201 antisense antisense MGP_C57BL6NJ_T0003470.1 MGP_C57BL6NJ_G0003190.1 mouse_genomes_project 11 113799859 113802180 + antisense antisense MGP_C57BL6NJ_T0003471.1 MGP_C57BL6NJ_G0003190.1 mouse_genomes_project 11 113799964 113802185 + antisense antisense MGP_C57BL6NJ_T0033409.1 MGP_C57BL6NJ_G0019671.1 mouse_genomes_project 11 111189637 111269059 + MGP_C57BL6NJ_P0033409 protein_coding protein_coding MGP_C57BL6NJ_T0033410.1 MGP_C57BL6NJ_G0019671.1 mouse_genomes_project 11 111212816 111235063 + protein_coding processed_transcript MGP_C57BL6NJ_T0033985.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123591289 123627085 + MGP_C57BL6NJ_P0033985 Myo15b protein_coding protein_coding MGP_C57BL6NJ_T0033986.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123610379 123613019 + Myo15b protein_coding processed_transcript MGP_C57BL6NJ_T0033987.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123610397 123614127 + MGP_C57BL6NJ_P0033987 Myo15b protein_coding protein_coding MGP_C57BL6NJ_T0033988.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123613288 123621938 + MGP_C57BL6NJ_P0033988 Myo15b protein_coding protein_coding MGP_C57BL6NJ_T0033989.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123620928 123621939 + MGP_C57BL6NJ_P0033989 Myo15b protein_coding protein_coding MGP_C57BL6NJ_T0033990.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123621299 123627081 + Myo15b protein_coding retained_intron MGP_C57BL6NJ_T0033991.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123622093 123627096 + MGP_C57BL6NJ_P0033991 Myo15b protein_coding protein_coding MGP_C57BL6NJ_T0033992.1 MGP_C57BL6NJ_G0019796.1 mouse_genomes_project 11 123624731 123625662 + Myo15b protein_coding retained_intron MGP_C57BL6NJ_T0013017.1 MGP_C57BL6NJ_G0011062.1 mouse_genomes_project 11 95276216 95276879 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012956.1 MGP_C57BL6NJ_G0011001.1 mouse_genomes_project 11 72208679 72208861 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031277.1 MGP_C57BL6NJ_G0019130.1 mouse_genomes_project 11 80081152 80148890 - MGP_C57BL6NJ_P0031277 Cpd protein_coding protein_coding MGP_C57BL6NJ_T0031278.1 MGP_C57BL6NJ_G0019130.1 mouse_genomes_project 11 80088491 80093369 - Cpd protein_coding retained_intron MGP_C57BL6NJ_T0031279.1 MGP_C57BL6NJ_G0019130.1 mouse_genomes_project 11 80109567 80112678 - Cpd protein_coding retained_intron MGP_C57BL6NJ_T0013004.1 MGP_C57BL6NJ_G0011049.1 mouse_genomes_project 11 89194799 89195208 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031148.1 MGP_C57BL6NJ_G0019102.1 mouse_genomes_project 11 78563224 78570445 - MGP_C57BL6NJ_P0031148 Serpinf2 protein_coding protein_coding MGP_C57BL6NJ_T0031149.1 MGP_C57BL6NJ_G0019102.1 mouse_genomes_project 11 78563228 78571046 - MGP_C57BL6NJ_P0031149 Serpinf2 protein_coding protein_coding MGP_C57BL6NJ_T0031150.1 MGP_C57BL6NJ_G0019102.1 mouse_genomes_project 11 78567458 78571136 - MGP_C57BL6NJ_P0031150 Serpinf2 protein_coding protein_coding MGP_C57BL6NJ_T0031151.1 MGP_C57BL6NJ_G0019102.1 mouse_genomes_project 11 78567977 78571123 - MGP_C57BL6NJ_P0031151 Serpinf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098970.1 MGP_C57BL6NJ_G0037034.1 mouse_genomes_project 11 103883507 103883614 - n-R5s73 rRNA rRNA MGP_C57BL6NJ_T0013045.1 MGP_C57BL6NJ_G0011090.1 mouse_genomes_project 11 108148316 108148715 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006483.1 MGP_C57BL6NJ_G0005403.1 mouse_genomes_project 11 100476358 100478698 - Gm11515 lincRNA lincRNA MGP_C57BL6NJ_T0032381.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102250989 102257589 - MGP_C57BL6NJ_P0032381 Nfe2l1 protein_coding protein_coding MGP_C57BL6NJ_T0032382.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102250989 102263454 - MGP_C57BL6NJ_P0032382 Nfe2l1 protein_coding protein_coding MGP_C57BL6NJ_T0032383.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102251174 102261295 - MGP_C57BL6NJ_P0032383 Nfe2l1 protein_coding protein_coding MGP_C57BL6NJ_T0032384.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102253668 102257703 - MGP_C57BL6NJ_P0032384 Nfe2l1 protein_coding protein_coding MGP_C57BL6NJ_T0032385.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102254045 102257584 - MGP_C57BL6NJ_P0032385 Nfe2l1 protein_coding protein_coding MGP_C57BL6NJ_T0032386.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102254921 102256301 - Nfe2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0032387.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102255798 102258128 - Nfe2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0032388.1 MGP_C57BL6NJ_G0019406.1 mouse_genomes_project 11 102261308 102263077 - Nfe2l1 protein_coding processed_transcript MGP_C57BL6NJ_T0009955.1 MGP_C57BL6NJ_G0008040.1 mouse_genomes_project 11 113520726 113520827 - Gm25994 miRNA miRNA MGP_C57BL6NJ_T0034625.1 MGP_C57BL6NJ_G0019918.1 mouse_genomes_project 11 129041635 129045924 + MGP_C57BL6NJ_P0034625 Hmga1-rs1 protein_coding protein_coding MGP_C57BL6NJ_T0034626.1 MGP_C57BL6NJ_G0019918.1 mouse_genomes_project 11 129042682 129042802 + MGP_C57BL6NJ_P0034626 Hmga1-rs1 protein_coding protein_coding MGP_C57BL6NJ_T0006452.1 MGP_C57BL6NJ_G0005383.1 mouse_genomes_project 11 83638384 83643462 - Gm26563 lincRNA lincRNA MGP_C57BL6NJ_T0006453.1 MGP_C57BL6NJ_G0005383.1 mouse_genomes_project 11 83639510 83652183 - Gm26563 lincRNA lincRNA MGP_C57BL6NJ_T0000983.1 MGP_C57BL6NJ_G0000893.1 mouse_genomes_project 11 128841835 128843003 + TEC TEC MGP_C57BL6NJ_T0101044.1 MGP_C57BL6NJ_G0039090.1 mouse_genomes_project 11 64832016 64832157 + Gm24151 snoRNA snoRNA MGP_C57BL6NJ_T0028880.1 MGP_C57BL6NJ_G0018518.1 mouse_genomes_project 11 31129205 31146760 + MGP_C57BL6NJ_P0028880 4930524B15Rik protein_coding protein_coding MGP_C57BL6NJ_T0032969.1 MGP_C57BL6NJ_G0019583.1 mouse_genomes_project 11 107372691 107381603 + Cntd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032970.1 MGP_C57BL6NJ_G0019583.1 mouse_genomes_project 11 107372775 107383759 + MGP_C57BL6NJ_P0032970 Cntd1 protein_coding protein_coding MGP_C57BL6NJ_T0032971.1 MGP_C57BL6NJ_G0019583.1 mouse_genomes_project 11 107380914 107391375 + Cntd1 protein_coding processed_transcript MGP_C57BL6NJ_T0017717.1 MGP_C57BL6NJ_G0015598.1 mouse_genomes_project 11 103680558 103681526 - Gm11632 processed_transcript processed_transcript MGP_C57BL6NJ_T0029979.1 MGP_C57BL6NJ_G0018829.1 mouse_genomes_project 11 63247360 63284629 - MGP_C57BL6NJ_P0029979 Slc47a1 protein_coding protein_coding MGP_C57BL6NJ_T0029980.1 MGP_C57BL6NJ_G0018829.1 mouse_genomes_project 11 63247361 63284612 - MGP_C57BL6NJ_P0029980 Slc47a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029981.1 MGP_C57BL6NJ_G0018829.1 mouse_genomes_project 11 63267779 63272226 - Slc47a1 protein_coding processed_transcript MGP_C57BL6NJ_T0029982.1 MGP_C57BL6NJ_G0018829.1 mouse_genomes_project 11 63267956 63284893 - MGP_C57BL6NJ_P0029982 Slc47a1 protein_coding protein_coding MGP_C57BL6NJ_T0028838.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29102754 29278016 - MGP_C57BL6NJ_P0028838 Sptbn1 protein_coding protein_coding MGP_C57BL6NJ_T0028839.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29102755 29106609 - Sptbn1 protein_coding retained_intron MGP_C57BL6NJ_T0028840.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29102755 29224405 - MGP_C57BL6NJ_P0028840 Sptbn1 protein_coding protein_coding MGP_C57BL6NJ_T0028841.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29104872 29108970 - Sptbn1 protein_coding retained_intron MGP_C57BL6NJ_T0028842.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29110144 29202890 - MGP_C57BL6NJ_P0028842 Sptbn1 protein_coding protein_coding MGP_C57BL6NJ_T0028843.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29113230 29114719 - Sptbn1 protein_coding retained_intron MGP_C57BL6NJ_T0028844.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29113307 29277061 - MGP_C57BL6NJ_P0028844 Sptbn1 protein_coding protein_coding MGP_C57BL6NJ_T0028845.1 MGP_C57BL6NJ_G0018506.1 mouse_genomes_project 11 29221291 29278022 - Sptbn1 protein_coding retained_intron MGP_C57BL6NJ_T0028525.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9387923 9413613 - Fignl1 protein_coding processed_transcript MGP_C57BL6NJ_T0028526.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9387935 9404963 - Fignl1 protein_coding processed_transcript MGP_C57BL6NJ_T0028527.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9403789 9413650 - MGP_C57BL6NJ_P0028527 Fignl1 protein_coding protein_coding MGP_C57BL6NJ_T0028528.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9403789 9413650 - MGP_C57BL6NJ_P0028528 Fignl1 protein_coding protein_coding MGP_C57BL6NJ_T0028529.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9403789 9413647 - MGP_C57BL6NJ_P0028529 Fignl1 protein_coding protein_coding MGP_C57BL6NJ_T0028530.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9404053 9413620 - MGP_C57BL6NJ_P0028530 Fignl1 protein_coding protein_coding MGP_C57BL6NJ_T0028531.1 MGP_C57BL6NJ_G0018439.1 mouse_genomes_project 11 9406198 9413636 - MGP_C57BL6NJ_P0028531 Fignl1 protein_coding protein_coding MGP_C57BL6NJ_T0031065.1 MGP_C57BL6NJ_G0019083.1 mouse_genomes_project 11 77392662 77393711 - MGP_C57BL6NJ_P0031065 Olfr411 protein_coding protein_coding MGP_C57BL6NJ_T0031066.1 MGP_C57BL6NJ_G0019083.1 mouse_genomes_project 11 77392930 77398651 - MGP_C57BL6NJ_P0031066 Olfr411 protein_coding protein_coding MGP_C57BL6NJ_T0012845.1 MGP_C57BL6NJ_G0010890.1 mouse_genomes_project 11 28298708 28298966 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032017.1 MGP_C57BL6NJ_G0019310.1 mouse_genomes_project 11 92296921 92298005 - MGP_C57BL6NJ_P0032017 Olfr464 protein_coding protein_coding MGP_C57BL6NJ_T0032018.1 MGP_C57BL6NJ_G0019310.1 mouse_genomes_project 11 92297566 92299539 - MGP_C57BL6NJ_P0032018 Olfr464 protein_coding protein_coding MGP_C57BL6NJ_T0029895.1 MGP_C57BL6NJ_G0018809.1 mouse_genomes_project 11 62195846 62237656 + MGP_C57BL6NJ_P0029895 Gid4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029896.1 MGP_C57BL6NJ_G0018809.1 mouse_genomes_project 11 62195963 62227116 + MGP_C57BL6NJ_P0029896 Gid4 protein_coding protein_coding MGP_C57BL6NJ_T0029489.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54502580 54517930 + MGP_C57BL6NJ_P0029489 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029490.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54503069 54528673 + MGP_C57BL6NJ_P0029490 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029491.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54503093 54534143 + MGP_C57BL6NJ_P0029491 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029492.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54503123 54528674 + MGP_C57BL6NJ_P0029492 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029493.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54503231 54526476 + MGP_C57BL6NJ_P0029493 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029494.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54503250 54526425 + MGP_C57BL6NJ_P0029494 Sept8 protein_coding protein_coding MGP_C57BL6NJ_T0029495.1 MGP_C57BL6NJ_G0018690.1 mouse_genomes_project 11 54515402 54520593 + Sept8 protein_coding processed_transcript MGP_C57BL6NJ_T0098961.1 MGP_C57BL6NJ_G0037025.1 mouse_genomes_project 11 59154473 59154592 + n-R5s69 rRNA rRNA MGP_C57BL6NJ_T0028923.1 MGP_C57BL6NJ_G0018525.1 mouse_genomes_project 11 31487799 31489500 + MGP_C57BL6NJ_P0028923 Hba-x protein_coding protein_coding MGP_C57BL6NJ_T0028924.1 MGP_C57BL6NJ_G0018525.1 mouse_genomes_project 11 31488292 31489500 + MGP_C57BL6NJ_P0028924 Hba-x protein_coding protein_coding MGP_C57BL6NJ_T0029840.1 MGP_C57BL6NJ_G0018800.1 mouse_genomes_project 11 61584870 61622609 + Nt5m protein_coding processed_transcript MGP_C57BL6NJ_T0029841.1 MGP_C57BL6NJ_G0018800.1 mouse_genomes_project 11 61584870 61627044 + Nt5m protein_coding processed_transcript MGP_C57BL6NJ_T0029842.1 MGP_C57BL6NJ_G0018800.1 mouse_genomes_project 11 61593496 61622609 + MGP_C57BL6NJ_P0029842 Nt5m protein_coding protein_coding MGP_C57BL6NJ_T0029843.1 MGP_C57BL6NJ_G0018800.1 mouse_genomes_project 11 61593527 61622609 + Nt5m protein_coding processed_transcript MGP_C57BL6NJ_T0028498.1 MGP_C57BL6NJ_G0018431.1 mouse_genomes_project 11 6406956 6433354 - MGP_C57BL6NJ_P0028498 Sun3 protein_coding protein_coding MGP_C57BL6NJ_T0028499.1 MGP_C57BL6NJ_G0018431.1 mouse_genomes_project 11 6406956 6443390 - MGP_C57BL6NJ_P0028499 Sun3 protein_coding protein_coding MGP_C57BL6NJ_T0003453.1 MGP_C57BL6NJ_G0003174.1 mouse_genomes_project 11 108246238 108251071 - E130111B04Rik antisense antisense MGP_C57BL6NJ_T0032807.1 MGP_C57BL6NJ_G0019547.1 mouse_genomes_project 11 106414193 106429255 + MGP_C57BL6NJ_P0032807 Klhl10 protein_coding protein_coding MGP_C57BL6NJ_T0032808.1 MGP_C57BL6NJ_G0019547.1 mouse_genomes_project 11 106414203 106418293 + MGP_C57BL6NJ_P0032808 Klhl10 protein_coding protein_coding MGP_C57BL6NJ_T0011559.1 MGP_C57BL6NJ_G0009644.1 mouse_genomes_project 11 54708673 54708983 + Gm22275 misc_RNA misc_RNA MGP_C57BL6NJ_T0012780.1 MGP_C57BL6NJ_G0010825.1 mouse_genomes_project 11 9748100 9751009 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012769.1 MGP_C57BL6NJ_G0010814.1 mouse_genomes_project 11 4020819 4022509 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032524.1 MGP_C57BL6NJ_G0019438.1 mouse_genomes_project 11 103422646 103424373 - Fbxo47 protein_coding retained_intron MGP_C57BL6NJ_T0032525.1 MGP_C57BL6NJ_G0019438.1 mouse_genomes_project 11 103422646 103457182 - MGP_C57BL6NJ_P0032525 Fbxo47 protein_coding protein_coding MGP_C57BL6NJ_T0029786.1 MGP_C57BL6NJ_G0018785.1 mouse_genomes_project 11 60903034 60922163 - MGP_C57BL6NJ_P0029786 Arf1 protein_coding protein_coding MGP_C57BL6NJ_T0029787.1 MGP_C57BL6NJ_G0018785.1 mouse_genomes_project 11 60903036 60922271 - MGP_C57BL6NJ_P0029787 Arf1 protein_coding protein_coding MGP_C57BL6NJ_T0017754.1 MGP_C57BL6NJ_G0015617.1 mouse_genomes_project 11 128364104 128365854 + Gm11769 processed_transcript processed_transcript MGP_C57BL6NJ_T0013009.1 MGP_C57BL6NJ_G0011054.1 mouse_genomes_project 11 91328883 91329354 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006459.1 MGP_C57BL6NJ_G0005387.1 mouse_genomes_project 11 87780584 87816807 - Gm12576 lincRNA lincRNA MGP_C57BL6NJ_T0009866.1 MGP_C57BL6NJ_G0007951.1 mouse_genomes_project 11 50372234 50372311 + Gm23813 miRNA miRNA MGP_C57BL6NJ_T0102772.1 MGP_C57BL6NJ_G0040567.1 mouse_genomes_project 11 129047928 129050577 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032903.1 MGP_C57BL6NJ_G0019567.1 mouse_genomes_project 11 107082454 107103359 + MGP_C57BL6NJ_P0032903 Naglu protein_coding protein_coding MGP_C57BL6NJ_T0032904.1 MGP_C57BL6NJ_G0019567.1 mouse_genomes_project 11 107083994 107102258 + Naglu protein_coding processed_transcript MGP_C57BL6NJ_T0032905.1 MGP_C57BL6NJ_G0019567.1 mouse_genomes_project 11 107084404 107102493 + Naglu protein_coding processed_transcript MGP_C57BL6NJ_T0017686.1 MGP_C57BL6NJ_G0015583.1 mouse_genomes_project 11 87208884 87211816 + AA465934 processed_transcript antisense MGP_C57BL6NJ_T0017687.1 MGP_C57BL6NJ_G0015583.1 mouse_genomes_project 11 87208905 87211817 + AA465934 processed_transcript antisense MGP_C57BL6NJ_T0017688.1 MGP_C57BL6NJ_G0015583.1 mouse_genomes_project 11 87208913 87209481 + AA465934 processed_transcript retained_intron MGP_C57BL6NJ_T0017689.1 MGP_C57BL6NJ_G0015583.1 mouse_genomes_project 11 87208927 87211814 + AA465934 processed_transcript antisense MGP_C57BL6NJ_T0017690.1 MGP_C57BL6NJ_G0015583.1 mouse_genomes_project 11 87208928 87211815 + AA465934 processed_transcript retained_intron MGP_C57BL6NJ_T0031073.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77724379 77731436 + Cluh protein_coding processed_transcript MGP_C57BL6NJ_T0031074.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77724399 77744790 + MGP_C57BL6NJ_P0031074 Cluh protein_coding protein_coding MGP_C57BL6NJ_T0031075.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77724399 77745732 + MGP_C57BL6NJ_P0031075 Cluh protein_coding protein_coding MGP_C57BL6NJ_T0031076.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77724424 77745732 + Cluh protein_coding retained_intron MGP_C57BL6NJ_T0031077.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77724714 77732224 + Cluh protein_coding processed_transcript MGP_C57BL6NJ_T0031078.1 MGP_C57BL6NJ_G0019087.1 mouse_genomes_project 11 77739366 77740193 + Cluh protein_coding retained_intron MGP_C57BL6NJ_T0030242.1 MGP_C57BL6NJ_G0018887.1 mouse_genomes_project 11 70195148 70197772 + Dhrs7c protein_coding processed_transcript MGP_C57BL6NJ_T0030243.1 MGP_C57BL6NJ_G0018887.1 mouse_genomes_project 11 70195232 70198140 + Dhrs7c protein_coding processed_transcript MGP_C57BL6NJ_T0030244.1 MGP_C57BL6NJ_G0018887.1 mouse_genomes_project 11 70195237 70198301 + Dhrs7c protein_coding processed_transcript MGP_C57BL6NJ_T0030245.1 MGP_C57BL6NJ_G0018887.1 mouse_genomes_project 11 70195238 70196028 + Dhrs7c protein_coding processed_transcript MGP_C57BL6NJ_T0030246.1 MGP_C57BL6NJ_G0018887.1 mouse_genomes_project 11 70195248 70212963 + MGP_C57BL6NJ_P0030246 Dhrs7c protein_coding protein_coding MGP_C57BL6NJ_T0006370.1 MGP_C57BL6NJ_G0005316.1 mouse_genomes_project 11 30937260 30977513 - D630024D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006371.1 MGP_C57BL6NJ_G0005316.1 mouse_genomes_project 11 30947809 30977564 - D630024D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006372.1 MGP_C57BL6NJ_G0005316.1 mouse_genomes_project 11 30969505 30977513 - D630024D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0034281.1 MGP_C57BL6NJ_G0019853.1 mouse_genomes_project 11 126066828 126186799 - MGP_C57BL6NJ_P0034281 Dnah17 protein_coding protein_coding MGP_C57BL6NJ_T0034282.1 MGP_C57BL6NJ_G0019853.1 mouse_genomes_project 11 126066828 126186799 - MGP_C57BL6NJ_P0034282 Dnah17 protein_coding protein_coding MGP_C57BL6NJ_T0034283.1 MGP_C57BL6NJ_G0019853.1 mouse_genomes_project 11 126068185 126158410 - MGP_C57BL6NJ_P0034283 Dnah17 protein_coding protein_coding MGP_C57BL6NJ_T0034284.1 MGP_C57BL6NJ_G0019853.1 mouse_genomes_project 11 126133684 126140092 - MGP_C57BL6NJ_P0034284 Dnah17 protein_coding protein_coding MGP_C57BL6NJ_T0034285.1 MGP_C57BL6NJ_G0019853.1 mouse_genomes_project 11 126168817 126183294 - MGP_C57BL6NJ_P0034285 Dnah17 protein_coding protein_coding MGP_C57BL6NJ_T0030853.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73727723 73747872 - MGP_C57BL6NJ_P0030853 Dhx33 protein_coding protein_coding MGP_C57BL6NJ_T0030854.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73730142 73737613 - MGP_C57BL6NJ_P0030854 Dhx33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030855.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73730383 73747855 - MGP_C57BL6NJ_P0030855 Dhx33 protein_coding protein_coding MGP_C57BL6NJ_T0030856.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73730383 73747775 - MGP_C57BL6NJ_P0030856 Dhx33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030857.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73735347 73738821 - Dhx33 protein_coding retained_intron MGP_C57BL6NJ_T0030858.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73735757 73739626 - MGP_C57BL6NJ_P0030858 Dhx33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030859.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73736742 73737650 - Dhx33 protein_coding retained_intron MGP_C57BL6NJ_T0030860.1 MGP_C57BL6NJ_G0019012.1 mouse_genomes_project 11 73742748 73747872 - Dhx33 protein_coding retained_intron MGP_C57BL6NJ_T0006538.1 MGP_C57BL6NJ_G0005443.1 mouse_genomes_project 11 126892238 126894695 + Gm11750 lincRNA lincRNA MGP_C57BL6NJ_T0012883.1 MGP_C57BL6NJ_G0010928.1 mouse_genomes_project 11 44611644 44612647 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003365.1 MGP_C57BL6NJ_G0003105.1 mouse_genomes_project 11 71035060 71038754 - Ccdc42os antisense antisense MGP_C57BL6NJ_T0003523.1 MGP_C57BL6NJ_G0003230.1 mouse_genomes_project 11 129360637 129384694 + Gm11775 antisense antisense MGP_C57BL6NJ_T0034029.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123824643 123841567 - MGP_C57BL6NJ_P0034029 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0034030.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123824644 123841778 - MGP_C57BL6NJ_P0034030 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0034031.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123824644 123841778 - MGP_C57BL6NJ_P0034031 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0034032.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123825102 123841441 - MGP_C57BL6NJ_P0034032 Unc13d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034033.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123825186 123841407 - MGP_C57BL6NJ_P0034033 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0034034.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123831329 123832890 - Unc13d protein_coding retained_intron MGP_C57BL6NJ_T0034035.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123839924 123840868 - MGP_C57BL6NJ_P0034035 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0034036.1 MGP_C57BL6NJ_G0019805.1 mouse_genomes_project 11 123840287 123841758 - MGP_C57BL6NJ_P0034036 Unc13d protein_coding protein_coding MGP_C57BL6NJ_T0033818.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122825104 122829664 - MGP_C57BL6NJ_P0033818 Nat9 protein_coding protein_coding MGP_C57BL6NJ_T0033819.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122825104 122830153 - MGP_C57BL6NJ_P0033819 Nat9 protein_coding protein_coding MGP_C57BL6NJ_T0033820.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122825104 122829641 - MGP_C57BL6NJ_P0033820 Nat9 protein_coding protein_coding MGP_C57BL6NJ_T0033821.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122825104 122829699 - MGP_C57BL6NJ_P0033821 Nat9 protein_coding protein_coding MGP_C57BL6NJ_T0033822.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122826772 122829571 - Nat9 protein_coding processed_transcript MGP_C57BL6NJ_T0033823.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122826876 122829390 - Nat9 protein_coding processed_transcript MGP_C57BL6NJ_T0033824.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122827066 122830151 - Nat9 protein_coding processed_transcript MGP_C57BL6NJ_T0033825.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122827067 122830168 - Nat9 protein_coding processed_transcript MGP_C57BL6NJ_T0033826.1 MGP_C57BL6NJ_G0019767.1 mouse_genomes_project 11 122827250 122829585 - Nat9 protein_coding processed_transcript MGP_C57BL6NJ_T0033603.1 MGP_C57BL6NJ_G0019714.1 mouse_genomes_project 11 114553713 114567098 - MGP_C57BL6NJ_P0033603 Cacng1 protein_coding protein_coding MGP_C57BL6NJ_T0009897.1 MGP_C57BL6NJ_G0007982.1 mouse_genomes_project 11 72853682 72853776 + Mir195a miRNA miRNA MGP_C57BL6NJ_T0030886.1 MGP_C57BL6NJ_G0019018.1 mouse_genomes_project 11 74819752 74829279 - MGP_C57BL6NJ_P0030886 Aipl1 protein_coding protein_coding MGP_C57BL6NJ_T0030887.1 MGP_C57BL6NJ_G0019018.1 mouse_genomes_project 11 74820506 74829299 - MGP_C57BL6NJ_P0030887 Aipl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030861.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73752419 73764430 - MGP_C57BL6NJ_P0030861 Derl2 protein_coding protein_coding MGP_C57BL6NJ_T0030862.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73752698 73764424 - MGP_C57BL6NJ_P0030862 Derl2 protein_coding protein_coding MGP_C57BL6NJ_T0030863.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73755606 73764457 - MGP_C57BL6NJ_P0030863 Derl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030864.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73757377 73764431 - Derl2 protein_coding retained_intron MGP_C57BL6NJ_T0030865.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73758309 73764463 - MGP_C57BL6NJ_P0030865 Derl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030866.1 MGP_C57BL6NJ_G0019013.1 mouse_genomes_project 11 73759753 73764400 - MGP_C57BL6NJ_P0030866 Derl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012936.1 MGP_C57BL6NJ_G0010981.1 mouse_genomes_project 11 62525837 62526218 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030421.1 MGP_C57BL6NJ_G0018924.1 mouse_genomes_project 11 71939029 71940745 - MGP_C57BL6NJ_P0030421 Tmem88 protein_coding protein_coding MGP_C57BL6NJ_T0031797.1 MGP_C57BL6NJ_G0019261.1 mouse_genomes_project 11 88452766 88552954 - MGP_C57BL6NJ_P0031797 Aatf protein_coding protein_coding MGP_C57BL6NJ_T0031798.1 MGP_C57BL6NJ_G0019261.1 mouse_genomes_project 11 88452794 88526550 - Aatf protein_coding processed_transcript MGP_C57BL6NJ_T0031799.1 MGP_C57BL6NJ_G0019261.1 mouse_genomes_project 11 88475484 88482509 - Aatf protein_coding retained_intron MGP_C57BL6NJ_T0031800.1 MGP_C57BL6NJ_G0019261.1 mouse_genomes_project 11 88499750 88552954 - Aatf protein_coding retained_intron MGP_C57BL6NJ_T0013054.1 MGP_C57BL6NJ_G0011099.1 mouse_genomes_project 11 111070769 111071059 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029800.1 MGP_C57BL6NJ_G0018790.1 mouse_genomes_project 11 61156983 61168624 + MGP_C57BL6NJ_P0029800 Jmjd4 protein_coding protein_coding MGP_C57BL6NJ_T0029801.1 MGP_C57BL6NJ_G0018790.1 mouse_genomes_project 11 61156983 61168718 + MGP_C57BL6NJ_P0029801 Jmjd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029802.1 MGP_C57BL6NJ_G0018790.1 mouse_genomes_project 11 61156983 61168624 + MGP_C57BL6NJ_P0029802 Jmjd4 protein_coding protein_coding MGP_C57BL6NJ_T0029803.1 MGP_C57BL6NJ_G0018790.1 mouse_genomes_project 11 61157059 61166257 + Jmjd4 protein_coding retained_intron MGP_C57BL6NJ_T0012928.1 MGP_C57BL6NJ_G0010973.1 mouse_genomes_project 11 60612053 60612518 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031372.1 MGP_C57BL6NJ_G0019148.1 mouse_genomes_project 11 81306421 81319921 - MGP_C57BL6NJ_P0031372 Pipox protein_coding protein_coding MGP_C57BL6NJ_T0031373.1 MGP_C57BL6NJ_G0019148.1 mouse_genomes_project 11 81306866 81308493 - Pipox protein_coding retained_intron MGP_C57BL6NJ_T0031374.1 MGP_C57BL6NJ_G0019148.1 mouse_genomes_project 11 81308425 81310351 - Pipox protein_coding processed_transcript MGP_C57BL6NJ_T0003511.1 MGP_C57BL6NJ_G0003222.1 mouse_genomes_project 11 128460767 128461656 - Gm11772 antisense antisense MGP_C57BL6NJ_T0028818.1 MGP_C57BL6NJ_G0018503.1 mouse_genomes_project 11 28498795 28535263 + MGP_C57BL6NJ_P0028818 Clhc1 protein_coding protein_coding MGP_C57BL6NJ_T0028819.1 MGP_C57BL6NJ_G0018503.1 mouse_genomes_project 11 28516130 28535242 + Clhc1 protein_coding processed_transcript MGP_C57BL6NJ_T0028820.1 MGP_C57BL6NJ_G0018503.1 mouse_genomes_project 11 28516147 28535100 + Clhc1 protein_coding processed_transcript MGP_C57BL6NJ_T0012848.1 MGP_C57BL6NJ_G0010893.1 mouse_genomes_project 11 28824374 28824846 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012792.1 MGP_C57BL6NJ_G0010837.1 mouse_genomes_project 11 14477541 14481516 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013089.1 MGP_C57BL6NJ_G0011134.1 mouse_genomes_project 11 126266343 126266811 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028440.1 MGP_C57BL6NJ_G0018416.1 mouse_genomes_project 11 3646627 3665295 - MGP_C57BL6NJ_P0028440 H2afv protein_coding protein_coding MGP_C57BL6NJ_T0028441.1 MGP_C57BL6NJ_G0018416.1 mouse_genomes_project 11 3647536 3665204 - MGP_C57BL6NJ_P0028441 H2afv protein_coding protein_coding MGP_C57BL6NJ_T0006350.1 MGP_C57BL6NJ_G0005300.1 mouse_genomes_project 11 21280226 21284626 - Gm12055 lincRNA lincRNA MGP_C57BL6NJ_T0017728.1 MGP_C57BL6NJ_G0015608.1 mouse_genomes_project 11 114243899 114251339 + Gm11714 processed_transcript processed_transcript MGP_C57BL6NJ_T0003322.1 MGP_C57BL6NJ_G0003070.1 mouse_genomes_project 11 56715995 56729734 + Gm12236 antisense antisense MGP_C57BL6NJ_T0099805.1 MGP_C57BL6NJ_G0037851.1 mouse_genomes_project 11 116003737 116003844 - Gm24149 snRNA snRNA MGP_C57BL6NJ_T0102734.1 MGP_C57BL6NJ_G0040529.1 mouse_genomes_project 11 51837007 51857883 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0033104.1 MGP_C57BL6NJ_G0019611.1 mouse_genomes_project 11 108319497 108320887 - MGP_C57BL6NJ_P0033104 Ppy protein_coding protein_coding MGP_C57BL6NJ_T0033105.1 MGP_C57BL6NJ_G0019611.1 mouse_genomes_project 11 108319497 108320878 - MGP_C57BL6NJ_P0033105 Ppy protein_coding protein_coding MGP_C57BL6NJ_T0028846.1 MGP_C57BL6NJ_G0018507.1 mouse_genomes_project 11 29453070 29503710 - MGP_C57BL6NJ_P0028846 4930505A04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028847.1 MGP_C57BL6NJ_G0018507.1 mouse_genomes_project 11 29453070 29503691 - MGP_C57BL6NJ_P0028847 4930505A04Rik protein_coding protein_coding MGP_C57BL6NJ_T0030500.1 MGP_C57BL6NJ_G0018942.1 mouse_genomes_project 11 72328621 72353238 - MGP_C57BL6NJ_P0030500 Polr2a protein_coding protein_coding MGP_C57BL6NJ_T0030501.1 MGP_C57BL6NJ_G0018942.1 mouse_genomes_project 11 72329034 72352824 - MGP_C57BL6NJ_P0030501 Polr2a protein_coding protein_coding MGP_C57BL6NJ_T0030502.1 MGP_C57BL6NJ_G0018942.1 mouse_genomes_project 11 72330835 72331973 - Polr2a protein_coding processed_transcript MGP_C57BL6NJ_T0030503.1 MGP_C57BL6NJ_G0018942.1 mouse_genomes_project 11 72336249 72337196 - Polr2a protein_coding processed_transcript MGP_C57BL6NJ_T0029744.1 MGP_C57BL6NJ_G0018770.1 mouse_genomes_project 11 60481464 60483281 + MGP_C57BL6NJ_P0029744 protein_coding protein_coding MGP_C57BL6NJ_T0030530.1 MGP_C57BL6NJ_G0018952.1 mouse_genomes_project 11 72454530 72459191 + MGP_C57BL6NJ_P0030530 Plscr3 protein_coding protein_coding MGP_C57BL6NJ_T0030531.1 MGP_C57BL6NJ_G0018952.1 mouse_genomes_project 11 72454771 72460213 + MGP_C57BL6NJ_P0030531 Plscr3 protein_coding protein_coding MGP_C57BL6NJ_T0030532.1 MGP_C57BL6NJ_G0018952.1 mouse_genomes_project 11 72454771 72456530 + MGP_C57BL6NJ_P0030532 Plscr3 protein_coding protein_coding MGP_C57BL6NJ_T0030533.1 MGP_C57BL6NJ_G0018952.1 mouse_genomes_project 11 72454830 72459198 + MGP_C57BL6NJ_P0030533 Plscr3 protein_coding protein_coding MGP_C57BL6NJ_T0003337.1 MGP_C57BL6NJ_G0003082.1 mouse_genomes_project 11 62008773 62009894 + Gm12265 antisense antisense MGP_C57BL6NJ_T0003297.1 MGP_C57BL6NJ_G0003048.1 mouse_genomes_project 11 43642805 43644317 - Gm12150 antisense antisense MGP_C57BL6NJ_T0003408.1 MGP_C57BL6NJ_G0003140.1 mouse_genomes_project 11 93417838 93447664 + Scpep1os antisense antisense MGP_C57BL6NJ_T0006464.1 MGP_C57BL6NJ_G0005390.1 mouse_genomes_project 11 88836254 88850238 - Gm11431 lincRNA lincRNA MGP_C57BL6NJ_T0030149.1 MGP_C57BL6NJ_G0018860.1 mouse_genomes_project 11 65201464 65232012 + MGP_C57BL6NJ_P0030149 Pmp22 protein_coding protein_coding MGP_C57BL6NJ_T0030150.1 MGP_C57BL6NJ_G0018860.1 mouse_genomes_project 11 65203994 65232013 + MGP_C57BL6NJ_P0030150 Pmp22 protein_coding protein_coding MGP_C57BL6NJ_T0030151.1 MGP_C57BL6NJ_G0018860.1 mouse_genomes_project 11 65205051 65230950 + MGP_C57BL6NJ_P0030151 Pmp22 protein_coding protein_coding MGP_C57BL6NJ_T0030152.1 MGP_C57BL6NJ_G0018860.1 mouse_genomes_project 11 65205285 65206972 + Pmp22 protein_coding processed_transcript MGP_C57BL6NJ_T0030153.1 MGP_C57BL6NJ_G0018860.1 mouse_genomes_project 11 65205550 65231032 + MGP_C57BL6NJ_P0030153 Pmp22 protein_coding protein_coding MGP_C57BL6NJ_T0013068.1 MGP_C57BL6NJ_G0011113.1 mouse_genomes_project 11 115939040 115940143 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003428.1 MGP_C57BL6NJ_G0003154.1 mouse_genomes_project 11 102371136 102376096 - Gm11525 antisense antisense MGP_C57BL6NJ_T0013003.1 MGP_C57BL6NJ_G0011048.1 mouse_genomes_project 11 89167924 89168451 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102737.1 MGP_C57BL6NJ_G0040532.1 mouse_genomes_project 11 59496673 59506853 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0029285.1 MGP_C57BL6NJ_G0018633.1 mouse_genomes_project 11 50839385 50861285 + MGP_C57BL6NJ_P0029285 Mgat4b protein_coding protein_coding MGP_C57BL6NJ_T0029286.1 MGP_C57BL6NJ_G0018633.1 mouse_genomes_project 11 50855520 50866525 + MGP_C57BL6NJ_P0029286 Mgat4b protein_coding protein_coding MGP_C57BL6NJ_T0029287.1 MGP_C57BL6NJ_G0018633.1 mouse_genomes_project 11 50860925 50866525 + MGP_C57BL6NJ_P0029287 Mgat4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029288.1 MGP_C57BL6NJ_G0018633.1 mouse_genomes_project 11 50860933 50863189 + Mgat4b protein_coding retained_intron MGP_C57BL6NJ_T0029289.1 MGP_C57BL6NJ_G0018633.1 mouse_genomes_project 11 50865444 50866339 + Mgat4b protein_coding retained_intron MGP_C57BL6NJ_T0032045.1 MGP_C57BL6NJ_G0019316.1 mouse_genomes_project 11 92745090 92746294 + MGP_C57BL6NJ_P0032045 Ccdc182 protein_coding protein_coding MGP_C57BL6NJ_T0017703.1 MGP_C57BL6NJ_G0015590.1 mouse_genomes_project 11 101861943 101878024 - Gm11529 processed_transcript processed_transcript MGP_C57BL6NJ_T0003510.1 MGP_C57BL6NJ_G0003221.1 mouse_genomes_project 11 128440615 128442527 - Gm11770 antisense antisense MGP_C57BL6NJ_T0017603.1 MGP_C57BL6NJ_G0015540.1 mouse_genomes_project 11 379564 384298 + 8430429K09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017604.1 MGP_C57BL6NJ_G0015540.1 mouse_genomes_project 11 379636 384162 + 8430429K09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017605.1 MGP_C57BL6NJ_G0015540.1 mouse_genomes_project 11 379671 423409 + 8430429K09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017606.1 MGP_C57BL6NJ_G0015540.1 mouse_genomes_project 11 379671 385537 + 8430429K09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017607.1 MGP_C57BL6NJ_G0015540.1 mouse_genomes_project 11 379679 384215 + 8430429K09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0032743.1 MGP_C57BL6NJ_G0019521.1 mouse_genomes_project 11 105826195 105827272 + MGP_C57BL6NJ_P0032743 Krtap9-5 protein_coding protein_coding MGP_C57BL6NJ_T0000974.1 MGP_C57BL6NJ_G0000884.1 mouse_genomes_project 11 17182999 17183866 - TEC TEC MGP_C57BL6NJ_T0029350.1 MGP_C57BL6NJ_G0018647.1 mouse_genomes_project 11 51610059 51613114 - MGP_C57BL6NJ_P0029350 4933414I15Rik protein_coding protein_coding MGP_C57BL6NJ_T0029351.1 MGP_C57BL6NJ_G0018647.1 mouse_genomes_project 11 51611046 51613090 - 4933414I15Rik protein_coding processed_transcript MGP_C57BL6NJ_T0006367.1 MGP_C57BL6NJ_G0005313.1 mouse_genomes_project 11 27720604 27786770 + Gm12082 lincRNA lincRNA MGP_C57BL6NJ_T0003524.1 MGP_C57BL6NJ_G0003231.1 mouse_genomes_project 11 130216668 130217326 - Gm15643 antisense antisense MGP_C57BL6NJ_T0006545.1 MGP_C57BL6NJ_G0005450.1 mouse_genomes_project 11 128732984 128735228 - Gm16755 lincRNA lincRNA MGP_C57BL6NJ_T0032907.1 MGP_C57BL6NJ_G0019569.1 mouse_genomes_project 11 107108251 107112560 + MGP_C57BL6NJ_P0032907 Coasy protein_coding protein_coding MGP_C57BL6NJ_T0032908.1 MGP_C57BL6NJ_G0019569.1 mouse_genomes_project 11 107108304 107111561 + Coasy protein_coding processed_transcript MGP_C57BL6NJ_T0032909.1 MGP_C57BL6NJ_G0019569.1 mouse_genomes_project 11 107108311 107112560 + MGP_C57BL6NJ_P0032909 Coasy protein_coding protein_coding MGP_C57BL6NJ_T0032910.1 MGP_C57BL6NJ_G0019569.1 mouse_genomes_project 11 107109581 107110866 + Coasy protein_coding processed_transcript MGP_C57BL6NJ_T0031839.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051346 89056116 + Car4 protein_coding retained_intron MGP_C57BL6NJ_T0031840.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051348 89059605 + MGP_C57BL6NJ_P0031840 Car4 protein_coding protein_coding MGP_C57BL6NJ_T0031841.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051371 89055479 + Car4 protein_coding processed_transcript MGP_C57BL6NJ_T0031842.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051385 89058124 + MGP_C57BL6NJ_P0031842 Car4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031843.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051387 89059595 + MGP_C57BL6NJ_P0031843 Car4 protein_coding protein_coding MGP_C57BL6NJ_T0031844.1 MGP_C57BL6NJ_G0019269.1 mouse_genomes_project 11 89051664 89057789 + MGP_C57BL6NJ_P0031844 Car4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034408.1 MGP_C57BL6NJ_G0019878.1 mouse_genomes_project 11 128106859 128109124 + MGP_C57BL6NJ_P0034408 Chmp6 protein_coding protein_coding MGP_C57BL6NJ_T0034409.1 MGP_C57BL6NJ_G0019878.1 mouse_genomes_project 11 128106904 128112568 + MGP_C57BL6NJ_P0034409 Chmp6 protein_coding protein_coding MGP_C57BL6NJ_T0034410.1 MGP_C57BL6NJ_G0019878.1 mouse_genomes_project 11 128108851 128112078 + Chmp6 protein_coding retained_intron MGP_C57BL6NJ_T0034411.1 MGP_C57BL6NJ_G0019878.1 mouse_genomes_project 11 128109760 128111658 + Chmp6 protein_coding retained_intron MGP_C57BL6NJ_T0032389.1 MGP_C57BL6NJ_G0019407.1 mouse_genomes_project 11 102285255 102286976 + Copz2 protein_coding retained_intron MGP_C57BL6NJ_T0032390.1 MGP_C57BL6NJ_G0019407.1 mouse_genomes_project 11 102285261 102299351 + MGP_C57BL6NJ_P0032390 Copz2 protein_coding protein_coding MGP_C57BL6NJ_T0032391.1 MGP_C57BL6NJ_G0019407.1 mouse_genomes_project 11 102285266 102289539 + MGP_C57BL6NJ_P0032391 Copz2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032392.1 MGP_C57BL6NJ_G0019407.1 mouse_genomes_project 11 102289285 102292326 + Copz2 protein_coding retained_intron MGP_C57BL6NJ_T0032393.1 MGP_C57BL6NJ_G0019407.1 mouse_genomes_project 11 102289516 102299351 + MGP_C57BL6NJ_P0032393 Copz2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033793.1 MGP_C57BL6NJ_G0019757.1 mouse_genomes_project 11 122451513 122465310 - MGP_C57BL6NJ_P0033793 Cd300lb protein_coding protein_coding MGP_C57BL6NJ_T0033794.1 MGP_C57BL6NJ_G0019757.1 mouse_genomes_project 11 122451513 122465295 - MGP_C57BL6NJ_P0033794 Cd300lb protein_coding protein_coding MGP_C57BL6NJ_T0033795.1 MGP_C57BL6NJ_G0019757.1 mouse_genomes_project 11 122459310 122465211 - Cd300lb protein_coding processed_transcript MGP_C57BL6NJ_T0029033.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42089855 42145958 - MGP_C57BL6NJ_P0029033 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0029034.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42089855 42145191 - MGP_C57BL6NJ_P0029034 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0029035.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42094474 42143003 - MGP_C57BL6NJ_P0029035 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0029036.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42114215 42143116 - MGP_C57BL6NJ_P0029036 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0029037.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42139143 42145958 - MGP_C57BL6NJ_P0029037 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0029038.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42140449 42145488 - Gabra1 protein_coding processed_transcript MGP_C57BL6NJ_T0029039.1 MGP_C57BL6NJ_G0018561.1 mouse_genomes_project 11 42142719 42145938 - MGP_C57BL6NJ_P0029039 Gabra1 protein_coding protein_coding MGP_C57BL6NJ_T0031628.1 MGP_C57BL6NJ_G0019207.1 mouse_genomes_project 11 84140646 84461157 - MGP_C57BL6NJ_P0031628 Myo1d protein_coding protein_coding MGP_C57BL6NJ_T0031629.1 MGP_C57BL6NJ_G0019207.1 mouse_genomes_project 11 84253003 84461157 - MGP_C57BL6NJ_P0031629 Myo1d protein_coding protein_coding MGP_C57BL6NJ_T0031630.1 MGP_C57BL6NJ_G0019207.1 mouse_genomes_project 11 84351182 84461135 - Myo1d protein_coding retained_intron MGP_C57BL6NJ_T0031216.1 MGP_C57BL6NJ_G0019116.1 mouse_genomes_project 11 79209537 79213195 + MGP_C57BL6NJ_P0031216 1700016K19Rik protein_coding protein_coding MGP_C57BL6NJ_T0102769.1 MGP_C57BL6NJ_G0040564.1 mouse_genomes_project 11 106148247 106152480 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0031260.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79678184 79838698 - MGP_C57BL6NJ_P0031260 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031261.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79678184 79780810 - MGP_C57BL6NJ_P0031261 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031262.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79678185 79780386 - MGP_C57BL6NJ_P0031262 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031263.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79678201 79733159 - MGP_C57BL6NJ_P0031263 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031264.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79680554 79765321 - MGP_C57BL6NJ_P0031264 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031265.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79684490 79698627 - Abr protein_coding processed_transcript MGP_C57BL6NJ_T0031266.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79717217 79732992 - MGP_C57BL6NJ_P0031266 Abr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031267.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79723135 79762787 - Abr protein_coding retained_intron MGP_C57BL6NJ_T0031268.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79728931 79761711 - MGP_C57BL6NJ_P0031268 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031269.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79745162 79844890 - MGP_C57BL6NJ_P0031269 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031270.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79745216 79898775 - MGP_C57BL6NJ_P0031270 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031271.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79745272 79889860 - MGP_C57BL6NJ_P0031271 Abr protein_coding protein_coding MGP_C57BL6NJ_T0031272.1 MGP_C57BL6NJ_G0019126.1 mouse_genomes_project 11 79751902 79762766 - Abr protein_coding processed_transcript MGP_C57BL6NJ_T0003504.1 MGP_C57BL6NJ_G0003215.1 mouse_genomes_project 11 125791620 125793037 - Gm11724 antisense antisense MGP_C57BL6NJ_T0017616.1 MGP_C57BL6NJ_G0015544.1 mouse_genomes_project 11 3757850 3760848 - Snhg15 processed_transcript processed_transcript MGP_C57BL6NJ_T0017617.1 MGP_C57BL6NJ_G0015544.1 mouse_genomes_project 11 3757851 3758990 - Snhg15 processed_transcript processed_transcript MGP_C57BL6NJ_T0017618.1 MGP_C57BL6NJ_G0015544.1 mouse_genomes_project 11 3757884 3760529 - Snhg15 processed_transcript processed_transcript MGP_C57BL6NJ_T0017619.1 MGP_C57BL6NJ_G0015544.1 mouse_genomes_project 11 3759986 3760834 - Snhg15 processed_transcript processed_transcript MGP_C57BL6NJ_T0033218.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108718136 108734764 - MGP_C57BL6NJ_P0033218 Itga2b protein_coding protein_coding MGP_C57BL6NJ_T0033219.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108718143 108721030 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033220.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108720678 108722209 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033221.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108720736 108723454 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033222.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108721311 108732080 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033223.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108722088 108723248 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033224.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108722398 108725724 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033225.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108726100 108726826 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033226.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108731167 108731836 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0033227.1 MGP_C57BL6NJ_G0019628.1 mouse_genomes_project 11 108732680 108735003 - Itga2b protein_coding processed_transcript MGP_C57BL6NJ_T0031854.1 MGP_C57BL6NJ_G0019271.1 mouse_genomes_project 11 89275243 89303505 + MGP_C57BL6NJ_P0031854 1700125H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0031855.1 MGP_C57BL6NJ_G0019271.1 mouse_genomes_project 11 89275935 89303505 + MGP_C57BL6NJ_P0031855 1700125H20Rik protein_coding protein_coding MGP_C57BL6NJ_T0033241.1 MGP_C57BL6NJ_G0019633.1 mouse_genomes_project 11 108977673 108992633 - MGP_C57BL6NJ_P0033241 Ccdc43 protein_coding protein_coding MGP_C57BL6NJ_T0033242.1 MGP_C57BL6NJ_G0019633.1 mouse_genomes_project 11 108977675 108992585 - MGP_C57BL6NJ_P0033242 Ccdc43 protein_coding protein_coding MGP_C57BL6NJ_T0033243.1 MGP_C57BL6NJ_G0019633.1 mouse_genomes_project 11 108979327 108992387 - Ccdc43 protein_coding processed_transcript MGP_C57BL6NJ_T0033244.1 MGP_C57BL6NJ_G0019633.1 mouse_genomes_project 11 108983264 108992585 - Ccdc43 protein_coding processed_transcript MGP_C57BL6NJ_T0033245.1 MGP_C57BL6NJ_G0019633.1 mouse_genomes_project 11 108984655 108992521 - Ccdc43 protein_coding processed_transcript MGP_C57BL6NJ_T0028480.1 MGP_C57BL6NJ_G0018425.1 mouse_genomes_project 11 4343512 4462139 + MGP_C57BL6NJ_P0028480 Adcy1 protein_coding protein_coding MGP_C57BL6NJ_T0028481.1 MGP_C57BL6NJ_G0018425.1 mouse_genomes_project 11 4443514 4456512 + Adcy1 protein_coding processed_transcript MGP_C57BL6NJ_T0003443.1 MGP_C57BL6NJ_G0003164.1 mouse_genomes_project 11 105965655 106000949 + Gm11571 antisense antisense MGP_C57BL6NJ_T0006498.1 MGP_C57BL6NJ_G0005413.1 mouse_genomes_project 11 106221182 106223223 + Gm12349 lincRNA lincRNA MGP_C57BL6NJ_T0030170.1 MGP_C57BL6NJ_G0018867.1 mouse_genomes_project 11 67326260 67334241 - MGP_C57BL6NJ_P0030170 1700086D15Rik protein_coding protein_coding MGP_C57BL6NJ_T0030171.1 MGP_C57BL6NJ_G0018867.1 mouse_genomes_project 11 67326260 67334240 - MGP_C57BL6NJ_P0030171 1700086D15Rik protein_coding protein_coding MGP_C57BL6NJ_T0003333.1 MGP_C57BL6NJ_G0003080.1 mouse_genomes_project 11 61553762 61562174 + Gm16062 antisense antisense MGP_C57BL6NJ_T0011556.1 MGP_C57BL6NJ_G0009641.1 mouse_genomes_project 11 42924457 42924769 + Gm25543 misc_RNA misc_RNA MGP_C57BL6NJ_T0009921.1 MGP_C57BL6NJ_G0008006.1 mouse_genomes_project 11 89937093 89937180 - Mir5110 miRNA miRNA MGP_C57BL6NJ_T0033375.1 MGP_C57BL6NJ_G0019664.1 mouse_genomes_project 11 110574807 110624993 + MGP_C57BL6NJ_P0033375 Crhr1 protein_coding protein_coding MGP_C57BL6NJ_T0101008.1 MGP_C57BL6NJ_G0039054.1 mouse_genomes_project 11 2123514 2123611 + Gm24958 snoRNA snoRNA MGP_C57BL6NJ_T0032163.1 MGP_C57BL6NJ_G0019347.1 mouse_genomes_project 11 99404040 99419510 + MGP_C57BL6NJ_P0032163 Ankrd40 protein_coding protein_coding MGP_C57BL6NJ_T0032164.1 MGP_C57BL6NJ_G0019347.1 mouse_genomes_project 11 99404040 99419700 + MGP_C57BL6NJ_P0032164 Ankrd40 protein_coding protein_coding MGP_C57BL6NJ_T0032165.1 MGP_C57BL6NJ_G0019347.1 mouse_genomes_project 11 99418290 99420149 + Ankrd40 protein_coding retained_intron MGP_C57BL6NJ_T0009886.1 MGP_C57BL6NJ_G0007971.1 mouse_genomes_project 11 69413638 69413710 + Mir6923 miRNA miRNA MGP_C57BL6NJ_T0033667.1 MGP_C57BL6NJ_G0019728.1 mouse_genomes_project 11 116566550 116607810 - MGP_C57BL6NJ_P0033667 Wipi1 protein_coding protein_coding MGP_C57BL6NJ_T0033668.1 MGP_C57BL6NJ_G0019728.1 mouse_genomes_project 11 116568345 116607810 - MGP_C57BL6NJ_P0033668 Wipi1 protein_coding protein_coding MGP_C57BL6NJ_T0033669.1 MGP_C57BL6NJ_G0019728.1 mouse_genomes_project 11 116575278 116607810 - MGP_C57BL6NJ_P0033669 Wipi1 protein_coding protein_coding MGP_C57BL6NJ_T0033670.1 MGP_C57BL6NJ_G0019728.1 mouse_genomes_project 11 116607616 116608345 - Wipi1 protein_coding processed_transcript MGP_C57BL6NJ_T0009909.1 MGP_C57BL6NJ_G0007994.1 mouse_genomes_project 11 78717962 78718045 + Mir3971 miRNA miRNA MGP_C57BL6NJ_T0028492.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6381563 6401097 - MGP_C57BL6NJ_P0028492 Hus1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028493.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6381563 6401128 - MGP_C57BL6NJ_P0028493 Hus1 protein_coding protein_coding MGP_C57BL6NJ_T0028494.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6383782 6401065 - Hus1 protein_coding retained_intron MGP_C57BL6NJ_T0028495.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6385766 6401101 - Hus1 protein_coding retained_intron MGP_C57BL6NJ_T0028496.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6388049 6400615 - Hus1 protein_coding retained_intron MGP_C57BL6NJ_T0028497.1 MGP_C57BL6NJ_G0018430.1 mouse_genomes_project 11 6395925 6401065 - Hus1 protein_coding processed_transcript MGP_C57BL6NJ_T0003300.1 MGP_C57BL6NJ_G0003051.1 mouse_genomes_project 11 46386754 46387858 - Gm16034 antisense antisense MGP_C57BL6NJ_T0003308.1 MGP_C57BL6NJ_G0003058.1 mouse_genomes_project 11 52818891 52819950 + Gm12204 antisense antisense MGP_C57BL6NJ_T0009970.1 MGP_C57BL6NJ_G0008055.1 mouse_genomes_project 11 128270936 128271048 - Gm25948 miRNA miRNA MGP_C57BL6NJ_T0031999.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92142849 92153785 + MGP_C57BL6NJ_P0031999 Mpo protein_coding protein_coding MGP_C57BL6NJ_T0032000.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92143063 92145315 + MGP_C57BL6NJ_P0032000 Mpo protein_coding protein_coding MGP_C57BL6NJ_T0032001.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92143477 92153785 + MGP_C57BL6NJ_P0032001 Mpo protein_coding protein_coding MGP_C57BL6NJ_T0032002.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92144471 92149288 + MGP_C57BL6NJ_P0032002 Mpo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032003.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92151909 92153197 + MGP_C57BL6NJ_P0032003 Mpo protein_coding protein_coding MGP_C57BL6NJ_T0032004.1 MGP_C57BL6NJ_G0019304.1 mouse_genomes_project 11 92152488 92153745 + Mpo protein_coding retained_intron MGP_C57BL6NJ_T0034694.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129573688 129580410 - MGP_C57BL6NJ_P0034694 BC017643 protein_coding protein_coding MGP_C57BL6NJ_T0034695.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129573688 129580406 - MGP_C57BL6NJ_P0034695 BC017643 protein_coding protein_coding MGP_C57BL6NJ_T0034696.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129574764 129579887 - BC017643 protein_coding retained_intron MGP_C57BL6NJ_T0034697.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129575047 129578483 - BC017643 protein_coding retained_intron MGP_C57BL6NJ_T0034698.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129575326 129580196 - MGP_C57BL6NJ_P0034698 BC017643 protein_coding protein_coding MGP_C57BL6NJ_T0034699.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129575670 129580336 - MGP_C57BL6NJ_P0034699 BC017643 protein_coding protein_coding MGP_C57BL6NJ_T0034700.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129575697 129580423 - MGP_C57BL6NJ_P0034700 BC017643 protein_coding protein_coding MGP_C57BL6NJ_T0034701.1 MGP_C57BL6NJ_G0019934.1 mouse_genomes_project 11 129577871 129580324 - BC017643 protein_coding processed_transcript MGP_C57BL6NJ_T0032412.1 MGP_C57BL6NJ_G0019411.1 mouse_genomes_project 11 102409869 102436123 - MGP_C57BL6NJ_P0032412 Sp2 protein_coding protein_coding MGP_C57BL6NJ_T0032413.1 MGP_C57BL6NJ_G0019411.1 mouse_genomes_project 11 102409870 102436146 - MGP_C57BL6NJ_P0032413 Sp2 protein_coding protein_coding MGP_C57BL6NJ_T0032414.1 MGP_C57BL6NJ_G0019411.1 mouse_genomes_project 11 102410002 102425142 - MGP_C57BL6NJ_P0032414 Sp2 protein_coding protein_coding MGP_C57BL6NJ_T0032415.1 MGP_C57BL6NJ_G0019411.1 mouse_genomes_project 11 102410748 102441394 - MGP_C57BL6NJ_P0032415 Sp2 protein_coding protein_coding MGP_C57BL6NJ_T0029939.1 MGP_C57BL6NJ_G0018820.1 mouse_genomes_project 11 62714987 62735763 - MGP_C57BL6NJ_P0029939 Tmem11 protein_coding protein_coding MGP_C57BL6NJ_T0029940.1 MGP_C57BL6NJ_G0018820.1 mouse_genomes_project 11 62714987 62735997 - MGP_C57BL6NJ_P0029940 Tmem11 protein_coding protein_coding MGP_C57BL6NJ_T0029941.1 MGP_C57BL6NJ_G0018820.1 mouse_genomes_project 11 62715522 62735512 - MGP_C57BL6NJ_P0029941 Tmem11 protein_coding protein_coding MGP_C57BL6NJ_T0032040.1 MGP_C57BL6NJ_G0019315.1 mouse_genomes_project 11 92648887 92656007 + MGP_C57BL6NJ_P0032040 Mrps23 protein_coding protein_coding MGP_C57BL6NJ_T0032041.1 MGP_C57BL6NJ_G0019315.1 mouse_genomes_project 11 92648910 92656007 + MGP_C57BL6NJ_P0032041 Mrps23 protein_coding protein_coding MGP_C57BL6NJ_T0032042.1 MGP_C57BL6NJ_G0019315.1 mouse_genomes_project 11 92648923 92655170 + MGP_C57BL6NJ_P0032042 Mrps23 protein_coding protein_coding MGP_C57BL6NJ_T0032043.1 MGP_C57BL6NJ_G0019315.1 mouse_genomes_project 11 92648923 92654730 + MGP_C57BL6NJ_P0032043 Mrps23 protein_coding protein_coding MGP_C57BL6NJ_T0032044.1 MGP_C57BL6NJ_G0019315.1 mouse_genomes_project 11 92648943 92655471 + MGP_C57BL6NJ_P0032044 Mrps23 protein_coding protein_coding MGP_C57BL6NJ_T0098965.1 MGP_C57BL6NJ_G0037029.1 mouse_genomes_project 11 77362731 77362850 + n-R5s71 rRNA rRNA MGP_C57BL6NJ_T0028694.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858242 21904022 + MGP_C57BL6NJ_P0028694 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0028695.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858242 21904022 + MGP_C57BL6NJ_P0028695 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0028696.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858256 21902658 + MGP_C57BL6NJ_P0028696 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0028697.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858259 21886570 + Xpo1 protein_coding processed_transcript MGP_C57BL6NJ_T0028698.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858279 21904674 + MGP_C57BL6NJ_P0028698 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0028699.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21858790 21869837 + MGP_C57BL6NJ_P0028699 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0028700.1 MGP_C57BL6NJ_G0018478.1 mouse_genomes_project 11 21891067 21893875 + MGP_C57BL6NJ_P0028700 Xpo1 protein_coding protein_coding MGP_C57BL6NJ_T0012906.1 MGP_C57BL6NJ_G0010951.1 mouse_genomes_project 11 54483052 54483628 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031805.1 MGP_C57BL6NJ_G0019263.1 mouse_genomes_project 11 88885937 88892354 - MGP_C57BL6NJ_P0031805 Mrm1 protein_coding protein_coding MGP_C57BL6NJ_T0031806.1 MGP_C57BL6NJ_G0019263.1 mouse_genomes_project 11 88887581 88888229 - Mrm1 protein_coding retained_intron MGP_C57BL6NJ_T0031807.1 MGP_C57BL6NJ_G0019263.1 mouse_genomes_project 11 88887841 88891573 - Mrm1 protein_coding processed_transcript MGP_C57BL6NJ_T0009930.1 MGP_C57BL6NJ_G0008015.1 mouse_genomes_project 11 101711427 101711537 + Mir10a miRNA miRNA MGP_C57BL6NJ_T0017649.1 MGP_C57BL6NJ_G0015561.1 mouse_genomes_project 11 49316492 49326307 - Gm16170 processed_transcript processed_transcript MGP_C57BL6NJ_T0003348.1 MGP_C57BL6NJ_G0003092.1 mouse_genomes_project 11 64808191 64811572 - antisense antisense MGP_C57BL6NJ_T0030228.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69825970 70049191 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030229.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69927073 69965097 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030230.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69966064 69984970 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030231.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69966100 70072885 + MGP_C57BL6NJ_P0030231 Gas7 protein_coding protein_coding MGP_C57BL6NJ_T0030232.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69976080 70072830 + MGP_C57BL6NJ_P0030232 Gas7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030233.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69976114 70054412 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030234.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 69976124 70049176 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030235.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 70036456 70067590 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0030237.1 MGP_C57BL6NJ_G0018883.1 mouse_genomes_project 11 70066073 70067466 + Gas7 protein_coding processed_transcript MGP_C57BL6NJ_T0003340.1 MGP_C57BL6NJ_G0003085.1 mouse_genomes_project 11 63442817 63443640 + Gm12272 antisense antisense MGP_C57BL6NJ_T0012957.1 MGP_C57BL6NJ_G0011002.1 mouse_genomes_project 11 72324647 72325237 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003265.1 MGP_C57BL6NJ_G0003023.1 mouse_genomes_project 11 3085433 3086859 + Gm11967 antisense antisense MGP_C57BL6NJ_T0099782.1 MGP_C57BL6NJ_G0037828.1 mouse_genomes_project 11 91710234 91710398 + Rnu1a1 snRNA snRNA MGP_C57BL6NJ_T0017644.1 MGP_C57BL6NJ_G0015558.1 mouse_genomes_project 11 33340481 33463617 - 4930469K13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029707.1 MGP_C57BL6NJ_G0018745.1 mouse_genomes_project 11 59940716 59949738 + MGP_C57BL6NJ_P0029707 Gm12253 protein_coding protein_coding MGP_C57BL6NJ_T0030780.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73360537 73365860 + MGP_C57BL6NJ_P0030780 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030781.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73360537 73364141 + MGP_C57BL6NJ_P0030781 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030782.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73360539 73365860 + MGP_C57BL6NJ_P0030782 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030783.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73360620 73361754 + MGP_C57BL6NJ_P0030783 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030784.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73361022 73361783 + MGP_C57BL6NJ_P0030784 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030785.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73361131 73365857 + MGP_C57BL6NJ_P0030785 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0030786.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73361674 73364180 + Eno3 protein_coding retained_intron MGP_C57BL6NJ_T0030787.1 MGP_C57BL6NJ_G0019001.1 mouse_genomes_project 11 73364108 73365611 + MGP_C57BL6NJ_P0030787 Eno3 protein_coding protein_coding MGP_C57BL6NJ_T0011557.1 MGP_C57BL6NJ_G0009642.1 mouse_genomes_project 11 51159078 51159354 - Gm23824 misc_RNA misc_RNA MGP_C57BL6NJ_T0032641.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104501879 104514208 + MGP_C57BL6NJ_P0032641 Msl1 protein_coding protein_coding MGP_C57BL6NJ_T0032642.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104502148 104507410 + MGP_C57BL6NJ_P0032642 Msl1 protein_coding protein_coding MGP_C57BL6NJ_T0032643.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104502157 104512792 + MGP_C57BL6NJ_P0032643 Msl1 protein_coding protein_coding MGP_C57BL6NJ_T0032644.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104505011 104511965 + MGP_C57BL6NJ_P0032644 Msl1 protein_coding protein_coding MGP_C57BL6NJ_T0032645.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104506522 104510477 + MGP_C57BL6NJ_P0032645 Msl1 protein_coding protein_coding MGP_C57BL6NJ_T0032646.1 MGP_C57BL6NJ_G0019466.1 mouse_genomes_project 11 104510628 104512137 + Msl1 protein_coding processed_transcript MGP_C57BL6NJ_T0098810.1 MGP_C57BL6NJ_G0036874.1 mouse_genomes_project 11 128891544 128892045 - pseudogene pseudogene MGP_C57BL6NJ_T0031893.1 MGP_C57BL6NJ_G0019280.1 mouse_genomes_project 11 90478129 90573165 - MGP_C57BL6NJ_P0031893 Med13 protein_coding protein_coding MGP_C57BL6NJ_T0031894.1 MGP_C57BL6NJ_G0019280.1 mouse_genomes_project 11 90483621 90489675 - Med13 protein_coding processed_transcript MGP_C57BL6NJ_T0031895.1 MGP_C57BL6NJ_G0019280.1 mouse_genomes_project 11 90486448 90490067 - Med13 protein_coding retained_intron MGP_C57BL6NJ_T0031896.1 MGP_C57BL6NJ_G0019280.1 mouse_genomes_project 11 90545221 90546399 - Med13 protein_coding retained_intron MGP_C57BL6NJ_T0012829.1 MGP_C57BL6NJ_G0010874.1 mouse_genomes_project 11 21342098 21342535 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031587.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855089 83913451 + MGP_C57BL6NJ_P0031587 Rhot1 protein_coding protein_coding MGP_C57BL6NJ_T0031588.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855125 83914546 + MGP_C57BL6NJ_P0031588 Rhot1 protein_coding protein_coding MGP_C57BL6NJ_T0031589.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855154 83914125 + MGP_C57BL6NJ_P0031589 Rhot1 protein_coding protein_coding MGP_C57BL6NJ_T0031590.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855183 83897548 + Rhot1 protein_coding retained_intron MGP_C57BL6NJ_T0031591.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855189 83913406 + MGP_C57BL6NJ_P0031591 Rhot1 protein_coding protein_coding MGP_C57BL6NJ_T0031592.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855217 83891996 + Rhot1 protein_coding retained_intron MGP_C57BL6NJ_T0031593.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83855357 83914135 + MGP_C57BL6NJ_P0031593 Rhot1 protein_coding protein_coding MGP_C57BL6NJ_T0031594.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83895266 83913377 + Rhot1 protein_coding processed_transcript MGP_C57BL6NJ_T0031595.1 MGP_C57BL6NJ_G0019201.1 mouse_genomes_project 11 83897927 83900038 + Rhot1 protein_coding retained_intron MGP_C57BL6NJ_T0029504.1 MGP_C57BL6NJ_G0018692.1 mouse_genomes_project 11 54596616 54615023 - Il4 protein_coding processed_transcript MGP_C57BL6NJ_T0029505.1 MGP_C57BL6NJ_G0018692.1 mouse_genomes_project 11 54610224 54616468 - MGP_C57BL6NJ_P0029505 Il4 protein_coding protein_coding MGP_C57BL6NJ_T0029506.1 MGP_C57BL6NJ_G0018692.1 mouse_genomes_project 11 54610224 54615137 - MGP_C57BL6NJ_P0029506 Il4 protein_coding protein_coding MGP_C57BL6NJ_T0029507.1 MGP_C57BL6NJ_G0018692.1 mouse_genomes_project 11 54610224 54616151 - MGP_C57BL6NJ_P0029507 Il4 protein_coding protein_coding MGP_C57BL6NJ_T0012750.1 MGP_C57BL6NJ_G0010795.1 mouse_genomes_project 11 593352 594823 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012747.1 MGP_C57BL6NJ_G0010792.1 mouse_genomes_project 11 401261 401737 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032817.1 MGP_C57BL6NJ_G0019550.1 mouse_genomes_project 11 106520025 106549152 + Ttc25 protein_coding retained_intron MGP_C57BL6NJ_T0032818.1 MGP_C57BL6NJ_G0019550.1 mouse_genomes_project 11 106520041 106524542 + Ttc25 protein_coding retained_intron MGP_C57BL6NJ_T0032819.1 MGP_C57BL6NJ_G0019550.1 mouse_genomes_project 11 106520132 106551139 + MGP_C57BL6NJ_P0032819 Ttc25 protein_coding protein_coding MGP_C57BL6NJ_T0032820.1 MGP_C57BL6NJ_G0019550.1 mouse_genomes_project 11 106523878 106524660 + Ttc25 protein_coding retained_intron MGP_C57BL6NJ_T0029619.1 MGP_C57BL6NJ_G0018716.1 mouse_genomes_project 11 56207292 56237858 - MGP_C57BL6NJ_P0029619 Ccdc69 protein_coding protein_coding MGP_C57BL6NJ_T0029620.1 MGP_C57BL6NJ_G0018716.1 mouse_genomes_project 11 56208291 56237882 - MGP_C57BL6NJ_P0029620 Ccdc69 protein_coding protein_coding MGP_C57BL6NJ_T0033246.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109066854 109085598 + MGP_C57BL6NJ_P0033246 Adam11 protein_coding protein_coding MGP_C57BL6NJ_T0033247.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109066854 109085598 + MGP_C57BL6NJ_P0033247 Adam11 protein_coding protein_coding MGP_C57BL6NJ_T0033248.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109067449 109076810 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033249.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109067546 109077170 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033250.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109075102 109077103 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033251.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109076817 109078997 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033252.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109079416 109081460 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033253.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109079452 109081737 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0033254.1 MGP_C57BL6NJ_G0019634.1 mouse_genomes_project 11 109081889 109083803 + Adam11 protein_coding processed_transcript MGP_C57BL6NJ_T0029000.1 MGP_C57BL6NJ_G0018554.1 mouse_genomes_project 11 35289831 35441180 - MGP_C57BL6NJ_P0029000 Wwc1 protein_coding protein_coding MGP_C57BL6NJ_T0029001.1 MGP_C57BL6NJ_G0018554.1 mouse_genomes_project 11 35303729 35305089 - Wwc1 protein_coding processed_transcript MGP_C57BL6NJ_T0029002.1 MGP_C57BL6NJ_G0018554.1 mouse_genomes_project 11 35323134 35330717 - Wwc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030888.1 MGP_C57BL6NJ_G0019019.1 mouse_genomes_project 11 74833811 74835062 + MGP_C57BL6NJ_P0030888 Fam64a protein_coding protein_coding MGP_C57BL6NJ_T0030889.1 MGP_C57BL6NJ_G0019019.1 mouse_genomes_project 11 74834234 74839150 + MGP_C57BL6NJ_P0030889 Fam64a protein_coding protein_coding MGP_C57BL6NJ_T0030890.1 MGP_C57BL6NJ_G0019019.1 mouse_genomes_project 11 74834281 74835444 + Fam64a protein_coding processed_transcript MGP_C57BL6NJ_T0030891.1 MGP_C57BL6NJ_G0019019.1 mouse_genomes_project 11 74834303 74837873 + Fam64a protein_coding processed_transcript MGP_C57BL6NJ_T0030892.1 MGP_C57BL6NJ_G0019019.1 mouse_genomes_project 11 74834701 74836820 + MGP_C57BL6NJ_P0030892 Fam64a protein_coding protein_coding MGP_C57BL6NJ_T0099806.1 MGP_C57BL6NJ_G0037852.1 mouse_genomes_project 11 116487465 116487576 - Gm22378 snRNA snRNA MGP_C57BL6NJ_T0032078.1 MGP_C57BL6NJ_G0019329.1 mouse_genomes_project 11 94713259 94719404 + MGP_C57BL6NJ_P0032078 Tmem100 protein_coding protein_coding MGP_C57BL6NJ_T0017707.1 MGP_C57BL6NJ_G0015592.1 mouse_genomes_project 11 102367229 102409996 + D030028A08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017708.1 MGP_C57BL6NJ_G0015592.1 mouse_genomes_project 11 102400671 102421537 + D030028A08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017709.1 MGP_C57BL6NJ_G0015592.1 mouse_genomes_project 11 102400695 102416545 + D030028A08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017710.1 MGP_C57BL6NJ_G0015592.1 mouse_genomes_project 11 102400818 102420372 + D030028A08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0031934.1 MGP_C57BL6NJ_G0019290.1 mouse_genomes_project 11 91327832 91336871 - MGP_C57BL6NJ_P0031934 Smg8 protein_coding protein_coding MGP_C57BL6NJ_T0031935.1 MGP_C57BL6NJ_G0019290.1 mouse_genomes_project 11 91327836 91335479 - MGP_C57BL6NJ_P0031935 Smg8 protein_coding protein_coding MGP_C57BL6NJ_T0017668.1 MGP_C57BL6NJ_G0015571.1 mouse_genomes_project 11 68400485 68542206 + Gm12296 processed_transcript processed_transcript MGP_C57BL6NJ_T0028501.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6519726 6537290 + MGP_C57BL6NJ_P0028501 protein_coding protein_coding MGP_C57BL6NJ_T0028502.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6520029 6535883 + MGP_C57BL6NJ_P0028502 protein_coding protein_coding MGP_C57BL6NJ_T0028503.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6520108 6521155 + protein_coding retained_intron MGP_C57BL6NJ_T0028504.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6520268 6535812 + MGP_C57BL6NJ_P0028504 protein_coding protein_coding MGP_C57BL6NJ_T0028505.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6520412 6538734 + MGP_C57BL6NJ_P0028505 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028506.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6526836 6537310 + MGP_C57BL6NJ_P0028506 protein_coding protein_coding MGP_C57BL6NJ_T0028507.1 MGP_C57BL6NJ_G0018433.1 mouse_genomes_project 11 6535575 6538643 + protein_coding retained_intron MGP_C57BL6NJ_T0034255.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125823735 125834111 - MGP_C57BL6NJ_P0034255 Tk1 protein_coding protein_coding MGP_C57BL6NJ_T0034256.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125823833 125824673 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0034257.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125824114 125825443 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0034258.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125829658 125833856 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0034259.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125829736 125833886 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0034260.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125830476 125833866 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0034261.1 MGP_C57BL6NJ_G0019846.1 mouse_genomes_project 11 125832852 125833836 - Tk1 protein_coding retained_intron MGP_C57BL6NJ_T0013042.1 MGP_C57BL6NJ_G0011087.1 mouse_genomes_project 11 107401799 107402438 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099748.1 MGP_C57BL6NJ_G0037794.1 mouse_genomes_project 11 38469526 38469633 - Gm23520 snRNA snRNA MGP_C57BL6NJ_T0031580.1 MGP_C57BL6NJ_G0019198.1 mouse_genomes_project 11 83775387 83780844 - MGP_C57BL6NJ_P0031580 Tefm protein_coding protein_coding MGP_C57BL6NJ_T0031581.1 MGP_C57BL6NJ_G0019198.1 mouse_genomes_project 11 83775387 83778578 - MGP_C57BL6NJ_P0031581 Tefm protein_coding protein_coding MGP_C57BL6NJ_T0031582.1 MGP_C57BL6NJ_G0019198.1 mouse_genomes_project 11 83776655 83780812 - MGP_C57BL6NJ_P0031582 Tefm protein_coding protein_coding MGP_C57BL6NJ_T0009938.1 MGP_C57BL6NJ_G0008023.1 mouse_genomes_project 11 103618305 103618385 + Gm27597 miRNA miRNA MGP_C57BL6NJ_T0033094.1 MGP_C57BL6NJ_G0019609.1 mouse_genomes_project 11 108257495 108273188 + MGP_C57BL6NJ_P0033094 Cd300lg protein_coding protein_coding MGP_C57BL6NJ_T0033095.1 MGP_C57BL6NJ_G0019609.1 mouse_genomes_project 11 108257495 108273188 + MGP_C57BL6NJ_P0033095 Cd300lg protein_coding protein_coding MGP_C57BL6NJ_T0033096.1 MGP_C57BL6NJ_G0019609.1 mouse_genomes_project 11 108257495 108266502 + MGP_C57BL6NJ_P0033096 Cd300lg protein_coding protein_coding MGP_C57BL6NJ_T0033097.1 MGP_C57BL6NJ_G0019609.1 mouse_genomes_project 11 108257495 108273188 + MGP_C57BL6NJ_P0033097 Cd300lg protein_coding protein_coding MGP_C57BL6NJ_T0013026.1 MGP_C57BL6NJ_G0011071.1 mouse_genomes_project 11 101063480 101063655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012843.1 MGP_C57BL6NJ_G0010888.1 mouse_genomes_project 11 28279159 28280099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012068.1 MGP_C57BL6NJ_G0010150.1 mouse_genomes_project 11 124002383 124006157 + MGP_C57BL6NJ_P0012068 Cdk3-ps polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012069.1 MGP_C57BL6NJ_G0010150.1 mouse_genomes_project 11 124002866 124003565 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012070.1 MGP_C57BL6NJ_G0010150.1 mouse_genomes_project 11 124002920 124006668 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0033082.1 MGP_C57BL6NJ_G0019607.1 mouse_genomes_project 11 108197970 108205948 + MGP_C57BL6NJ_P0033082 1700006E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0033083.1 MGP_C57BL6NJ_G0019607.1 mouse_genomes_project 11 108197975 108204542 + MGP_C57BL6NJ_P0033083 1700006E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0033084.1 MGP_C57BL6NJ_G0019607.1 mouse_genomes_project 11 108200747 108205956 + MGP_C57BL6NJ_P0033084 1700006E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0032198.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99604413 99627196 - Mycbpap protein_coding retained_intron MGP_C57BL6NJ_T0032199.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99604413 99606636 - Mycbpap protein_coding processed_transcript MGP_C57BL6NJ_T0032200.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99604413 99610420 - MGP_C57BL6NJ_P0032200 Mycbpap protein_coding protein_coding MGP_C57BL6NJ_T0032201.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99604413 99627196 - MGP_C57BL6NJ_P0032201 Mycbpap protein_coding protein_coding MGP_C57BL6NJ_T0032202.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99606070 99606623 - Mycbpap protein_coding retained_intron MGP_C57BL6NJ_T0032203.1 MGP_C57BL6NJ_G0019352.1 mouse_genomes_project 11 99610764 99613226 - Mycbpap protein_coding retained_intron MGP_C57BL6NJ_T0009923.1 MGP_C57BL6NJ_G0008008.1 mouse_genomes_project 11 91363054 91363140 + Mir301 miRNA miRNA MGP_C57BL6NJ_T0031404.1 MGP_C57BL6NJ_G0019154.1 mouse_genomes_project 11 81540864 81609206 + MGP_C57BL6NJ_P0031404 Fam222b protein_coding protein_coding MGP_C57BL6NJ_T0031405.1 MGP_C57BL6NJ_G0019154.1 mouse_genomes_project 11 81540912 81608581 + MGP_C57BL6NJ_P0031405 Fam222b protein_coding protein_coding MGP_C57BL6NJ_T0031406.1 MGP_C57BL6NJ_G0019154.1 mouse_genomes_project 11 81567533 81609206 + MGP_C57BL6NJ_P0031406 Fam222b protein_coding protein_coding MGP_C57BL6NJ_T0099761.1 MGP_C57BL6NJ_G0037807.1 mouse_genomes_project 11 71501891 71501975 + Gm25819 snRNA snRNA MGP_C57BL6NJ_T0099736.1 MGP_C57BL6NJ_G0037782.1 mouse_genomes_project 11 14716181 14716288 - Gm25698 snRNA snRNA MGP_C57BL6NJ_T0102764.1 MGP_C57BL6NJ_G0040559.1 mouse_genomes_project 11 105515720 105515843 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032654.1 MGP_C57BL6NJ_G0019469.1 mouse_genomes_project 11 104580907 104619838 + MGP_C57BL6NJ_P0032654 Wipf2 protein_coding protein_coding MGP_C57BL6NJ_T0032655.1 MGP_C57BL6NJ_G0019469.1 mouse_genomes_project 11 104580907 104632972 + MGP_C57BL6NJ_P0032655 Wipf2 protein_coding protein_coding MGP_C57BL6NJ_T0032656.1 MGP_C57BL6NJ_G0019469.1 mouse_genomes_project 11 104581434 104620379 + Wipf2 protein_coding retained_intron MGP_C57BL6NJ_T0032657.1 MGP_C57BL6NJ_G0019469.1 mouse_genomes_project 11 104618711 104619636 + Wipf2 protein_coding retained_intron MGP_C57BL6NJ_T0101029.1 MGP_C57BL6NJ_G0039075.1 mouse_genomes_project 11 34612967 34613104 + Gm26070 snoRNA snoRNA MGP_C57BL6NJ_T0029472.1 MGP_C57BL6NJ_G0018683.1 mouse_genomes_project 11 54403839 54406745 - MGP_C57BL6NJ_P0029472 Uqcrq protein_coding protein_coding MGP_C57BL6NJ_T0029473.1 MGP_C57BL6NJ_G0018683.1 mouse_genomes_project 11 54404870 54406749 - Uqcrq protein_coding processed_transcript MGP_C57BL6NJ_T0029474.1 MGP_C57BL6NJ_G0018683.1 mouse_genomes_project 11 54404870 54406745 - MGP_C57BL6NJ_P0029474 Uqcrq protein_coding protein_coding MGP_C57BL6NJ_T0029475.1 MGP_C57BL6NJ_G0018683.1 mouse_genomes_project 11 54404870 54406352 - MGP_C57BL6NJ_P0029475 Uqcrq protein_coding protein_coding MGP_C57BL6NJ_T0028980.1 MGP_C57BL6NJ_G0018548.1 mouse_genomes_project 11 33687296 33800262 + MGP_C57BL6NJ_P0028980 Fam196b protein_coding protein_coding MGP_C57BL6NJ_T0028981.1 MGP_C57BL6NJ_G0018548.1 mouse_genomes_project 11 33687296 33800261 + MGP_C57BL6NJ_P0028981 Fam196b protein_coding protein_coding MGP_C57BL6NJ_T0031026.1 MGP_C57BL6NJ_G0019060.1 mouse_genomes_project 11 76571579 76572518 - MGP_C57BL6NJ_P0031026 Olfr385 protein_coding protein_coding MGP_C57BL6NJ_T0034434.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128298491 128308359 - MGP_C57BL6NJ_P0034434 Enthd2 protein_coding protein_coding MGP_C57BL6NJ_T0034435.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128298491 128308359 - MGP_C57BL6NJ_P0034435 Enthd2 protein_coding protein_coding MGP_C57BL6NJ_T0034436.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128298491 128308359 - MGP_C57BL6NJ_P0034436 Enthd2 protein_coding protein_coding MGP_C57BL6NJ_T0034437.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128302120 128307013 - Enthd2 protein_coding processed_transcript MGP_C57BL6NJ_T0034438.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128305157 128306888 - Enthd2 protein_coding processed_transcript MGP_C57BL6NJ_T0034439.1 MGP_C57BL6NJ_G0019882.1 mouse_genomes_project 11 128306526 128308328 - Enthd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033604.1 MGP_C57BL6NJ_G0019715.1 mouse_genomes_project 11 114582938 114647789 - MGP_C57BL6NJ_P0033604 Cacng4 protein_coding protein_coding MGP_C57BL6NJ_T0033605.1 MGP_C57BL6NJ_G0019715.1 mouse_genomes_project 11 114585808 114592691 - Cacng4 protein_coding processed_transcript MGP_C57BL6NJ_T0030369.1 MGP_C57BL6NJ_G0018912.1 mouse_genomes_project 11 71637612 71643141 + MGP_C57BL6NJ_P0030369 Hes7 protein_coding protein_coding MGP_C57BL6NJ_T0028642.1 MGP_C57BL6NJ_G0018465.1 mouse_genomes_project 11 19761370 19769330 - Ugp2 protein_coding processed_transcript MGP_C57BL6NJ_T0028643.1 MGP_C57BL6NJ_G0018465.1 mouse_genomes_project 11 19761386 19762949 - Ugp2 protein_coding processed_transcript MGP_C57BL6NJ_T0028644.1 MGP_C57BL6NJ_G0018465.1 mouse_genomes_project 11 19761468 19811321 - MGP_C57BL6NJ_P0028644 Ugp2 protein_coding protein_coding MGP_C57BL6NJ_T0033973.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123556934 123588692 + MGP_C57BL6NJ_P0033973 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033974.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123556943 123588690 + MGP_C57BL6NJ_P0033974 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033975.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123556943 123578357 + MGP_C57BL6NJ_P0033975 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033976.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123564853 123577799 + MGP_C57BL6NJ_P0033976 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033977.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123566810 123578304 + MGP_C57BL6NJ_P0033977 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033978.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123567199 123578364 + MGP_C57BL6NJ_P0033978 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033979.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123567208 123578392 + MGP_C57BL6NJ_P0033979 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033980.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123586163 123587232 + Llgl2 protein_coding retained_intron MGP_C57BL6NJ_T0033981.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123586647 123587771 + Llgl2 protein_coding processed_transcript MGP_C57BL6NJ_T0033982.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123586714 123588692 + MGP_C57BL6NJ_P0033982 Llgl2 protein_coding protein_coding MGP_C57BL6NJ_T0033983.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123587144 123588496 + Llgl2 protein_coding retained_intron MGP_C57BL6NJ_T0033984.1 MGP_C57BL6NJ_G0019795.1 mouse_genomes_project 11 123587943 123588692 + Llgl2 protein_coding retained_intron MGP_C57BL6NJ_T0029275.1 MGP_C57BL6NJ_G0018631.1 mouse_genomes_project 11 50798294 50802199 + 3010026O09Rik protein_coding processed_transcript MGP_C57BL6NJ_T0029276.1 MGP_C57BL6NJ_G0018631.1 mouse_genomes_project 11 50798699 50827349 + MGP_C57BL6NJ_P0029276 3010026O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0029277.1 MGP_C57BL6NJ_G0018631.1 mouse_genomes_project 11 50798757 50824297 + MGP_C57BL6NJ_P0029277 3010026O09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031731.1 MGP_C57BL6NJ_G0019241.1 mouse_genomes_project 11 87362014 87384269 - MGP_C57BL6NJ_P0031731 Mmp28 protein_coding protein_coding MGP_C57BL6NJ_T0031732.1 MGP_C57BL6NJ_G0019241.1 mouse_genomes_project 11 87363122 87384208 - MGP_C57BL6NJ_P0031732 Mmp28 protein_coding protein_coding MGP_C57BL6NJ_T0031733.1 MGP_C57BL6NJ_G0019241.1 mouse_genomes_project 11 87363122 87384318 - MGP_C57BL6NJ_P0031733 Mmp28 protein_coding protein_coding MGP_C57BL6NJ_T0031734.1 MGP_C57BL6NJ_G0019241.1 mouse_genomes_project 11 87364307 87384239 - MGP_C57BL6NJ_P0031734 Mmp28 protein_coding protein_coding MGP_C57BL6NJ_T0031735.1 MGP_C57BL6NJ_G0019241.1 mouse_genomes_project 11 87372632 87384318 - Mmp28 protein_coding processed_transcript MGP_C57BL6NJ_T0034540.1 MGP_C57BL6NJ_G0019905.1 mouse_genomes_project 11 128872049 128872666 + MGP_C57BL6NJ_P0034540 Npb protein_coding protein_coding MGP_C57BL6NJ_T0034541.1 MGP_C57BL6NJ_G0019905.1 mouse_genomes_project 11 128872049 128872666 + MGP_C57BL6NJ_P0034541 Npb protein_coding protein_coding MGP_C57BL6NJ_T0034542.1 MGP_C57BL6NJ_G0019905.1 mouse_genomes_project 11 128872077 128872606 + MGP_C57BL6NJ_P0034542 Npb protein_coding protein_coding MGP_C57BL6NJ_T0098962.1 MGP_C57BL6NJ_G0037026.1 mouse_genomes_project 11 61556819 61556956 + Gm24939 rRNA rRNA MGP_C57BL6NJ_T0101060.1 MGP_C57BL6NJ_G0039106.1 mouse_genomes_project 11 81636303 81636372 - Snord42b snoRNA snoRNA MGP_C57BL6NJ_T0029201.1 MGP_C57BL6NJ_G0018611.1 mouse_genomes_project 11 49683536 49705049 - MGP_C57BL6NJ_P0029201 Btnl9 protein_coding protein_coding MGP_C57BL6NJ_T0029202.1 MGP_C57BL6NJ_G0018611.1 mouse_genomes_project 11 49686985 49704935 - MGP_C57BL6NJ_P0029202 Btnl9 protein_coding protein_coding MGP_C57BL6NJ_T0029203.1 MGP_C57BL6NJ_G0018611.1 mouse_genomes_project 11 49687253 49688607 - Btnl9 protein_coding retained_intron MGP_C57BL6NJ_T0029204.1 MGP_C57BL6NJ_G0018611.1 mouse_genomes_project 11 49692757 49704927 - MGP_C57BL6NJ_P0029204 Btnl9 protein_coding protein_coding MGP_C57BL6NJ_T0029205.1 MGP_C57BL6NJ_G0018611.1 mouse_genomes_project 11 49700186 49704957 - Btnl9 protein_coding processed_transcript MGP_C57BL6NJ_T0029514.1 MGP_C57BL6NJ_G0018695.1 mouse_genomes_project 11 54730504 54734818 + MGP_C57BL6NJ_P0029514 Il5 protein_coding protein_coding MGP_C57BL6NJ_T0101033.1 MGP_C57BL6NJ_G0039079.1 mouse_genomes_project 11 49264490 49264571 + Snord96a snoRNA snoRNA MGP_C57BL6NJ_T0030644.1 MGP_C57BL6NJ_G0018972.1 mouse_genomes_project 11 72715188 72727831 + MGP_C57BL6NJ_P0030644 Asgr2 protein_coding protein_coding MGP_C57BL6NJ_T0030645.1 MGP_C57BL6NJ_G0018972.1 mouse_genomes_project 11 72715510 72728301 + MGP_C57BL6NJ_P0030645 Asgr2 protein_coding protein_coding MGP_C57BL6NJ_T0030646.1 MGP_C57BL6NJ_G0018972.1 mouse_genomes_project 11 72720132 72728276 + Asgr2 protein_coding retained_intron MGP_C57BL6NJ_T0006337.1 MGP_C57BL6NJ_G0005288.1 mouse_genomes_project 11 16598128 16623987 - Gm12022 lincRNA lincRNA MGP_C57BL6NJ_T0012858.1 MGP_C57BL6NJ_G0010903.1 mouse_genomes_project 11 30209266 30210045 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031686.1 MGP_C57BL6NJ_G0019227.1 mouse_genomes_project 11 86717692 86754256 + MGP_C57BL6NJ_P0031686 Unc45b protein_coding protein_coding MGP_C57BL6NJ_T0031687.1 MGP_C57BL6NJ_G0019227.1 mouse_genomes_project 11 86718395 86754256 + MGP_C57BL6NJ_P0031687 Unc45b protein_coding protein_coding MGP_C57BL6NJ_T0031688.1 MGP_C57BL6NJ_G0019227.1 mouse_genomes_project 11 86718395 86754256 + MGP_C57BL6NJ_P0031688 Unc45b protein_coding protein_coding MGP_C57BL6NJ_T0031689.1 MGP_C57BL6NJ_G0019227.1 mouse_genomes_project 11 86738839 86739626 + Unc45b protein_coding processed_transcript MGP_C57BL6NJ_T0031690.1 MGP_C57BL6NJ_G0019227.1 mouse_genomes_project 11 86744454 86748610 + Unc45b protein_coding processed_transcript MGP_C57BL6NJ_T0028168.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 487469 - Smtn protein_coding processed_transcript MGP_C57BL6NJ_T0028169.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 476154 - MGP_C57BL6NJ_P0028169 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028170.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 487456 - MGP_C57BL6NJ_P0028170 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028171.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 487509 - MGP_C57BL6NJ_P0028171 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028172.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 487509 - MGP_C57BL6NJ_P0028172 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028173.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 465741 485615 - MGP_C57BL6NJ_P0028173 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028174.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 468756 470771 - Smtn protein_coding processed_transcript MGP_C57BL6NJ_T0028175.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 480676 488829 - MGP_C57BL6NJ_P0028175 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028176.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 480819 487468 - MGP_C57BL6NJ_P0028176 Smtn protein_coding protein_coding MGP_C57BL6NJ_T0028177.1 MGP_C57BL6NJ_G0018355.1 mouse_genomes_project 11 483030 487466 - Smtn protein_coding processed_transcript MGP_C57BL6NJ_T0029196.1 MGP_C57BL6NJ_G0018608.1 mouse_genomes_project 11 49624511 49626609 - MGP_C57BL6NJ_P0029196 Olfr1396 protein_coding protein_coding MGP_C57BL6NJ_T0030157.1 MGP_C57BL6NJ_G0018863.1 mouse_genomes_project 11 66573294 66574792 - MGP_C57BL6NJ_P0030157 F930015N05Rik protein_coding protein_coding MGP_C57BL6NJ_T0003462.1 MGP_C57BL6NJ_G0003183.1 mouse_genomes_project 11 111764080 111769991 - 1700052K11Rik antisense antisense MGP_C57BL6NJ_T0006430.1 MGP_C57BL6NJ_G0005367.1 mouse_genomes_project 11 73777124 73778697 - 6330403K07Rik lincRNA lincRNA MGP_C57BL6NJ_T0034480.1 MGP_C57BL6NJ_G0019890.1 mouse_genomes_project 11 128687060 128691357 + MGP_C57BL6NJ_P0034480 Tspan10 protein_coding protein_coding MGP_C57BL6NJ_T0034481.1 MGP_C57BL6NJ_G0019890.1 mouse_genomes_project 11 128687087 128688722 + Tspan10 protein_coding processed_transcript MGP_C57BL6NJ_T0029674.1 MGP_C57BL6NJ_G0018735.1 mouse_genomes_project 11 59562915 59615207 - MGP_C57BL6NJ_P0029674 Gemin5 protein_coding protein_coding MGP_C57BL6NJ_T0029675.1 MGP_C57BL6NJ_G0018735.1 mouse_genomes_project 11 59564203 59615207 - MGP_C57BL6NJ_P0029675 Gemin5 protein_coding protein_coding MGP_C57BL6NJ_T0029676.1 MGP_C57BL6NJ_G0018735.1 mouse_genomes_project 11 59564203 59615207 - MGP_C57BL6NJ_P0029676 Gemin5 protein_coding protein_coding MGP_C57BL6NJ_T0029677.1 MGP_C57BL6NJ_G0018735.1 mouse_genomes_project 11 59579837 59582388 - Gemin5 protein_coding processed_transcript MGP_C57BL6NJ_T0029678.1 MGP_C57BL6NJ_G0018735.1 mouse_genomes_project 11 59599143 59604799 - MGP_C57BL6NJ_P0029678 Gemin5 protein_coding protein_coding MGP_C57BL6NJ_T0030348.1 MGP_C57BL6NJ_G0018907.1 mouse_genomes_project 11 71575313 71577175 + MGP_C57BL6NJ_P0030348 Borcs6 protein_coding protein_coding MGP_C57BL6NJ_T0012804.1 MGP_C57BL6NJ_G0010849.1 mouse_genomes_project 11 17964965 17966313 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006478.1 MGP_C57BL6NJ_G0005400.1 mouse_genomes_project 11 93906089 93917096 + lincRNA lincRNA MGP_C57BL6NJ_T0032376.1 MGP_C57BL6NJ_G0019405.1 mouse_genomes_project 11 102221365 102236209 + MGP_C57BL6NJ_P0032376 Cbx1 protein_coding protein_coding MGP_C57BL6NJ_T0032377.1 MGP_C57BL6NJ_G0019405.1 mouse_genomes_project 11 102221375 102241232 + MGP_C57BL6NJ_P0032377 Cbx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032378.1 MGP_C57BL6NJ_G0019405.1 mouse_genomes_project 11 102221397 102241723 + MGP_C57BL6NJ_P0032378 Cbx1 protein_coding protein_coding MGP_C57BL6NJ_T0032379.1 MGP_C57BL6NJ_G0019405.1 mouse_genomes_project 11 102221413 102233645 + Cbx1 protein_coding retained_intron MGP_C57BL6NJ_T0032380.1 MGP_C57BL6NJ_G0019405.1 mouse_genomes_project 11 102221487 102241623 + MGP_C57BL6NJ_P0032380 Cbx1 protein_coding protein_coding MGP_C57BL6NJ_T0013063.1 MGP_C57BL6NJ_G0011108.1 mouse_genomes_project 11 113961969 113962302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031727.1 MGP_C57BL6NJ_G0019239.1 mouse_genomes_project 11 87342424 87349916 - MGP_C57BL6NJ_P0031727 Gas2l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031728.1 MGP_C57BL6NJ_G0019239.1 mouse_genomes_project 11 87342424 87349916 - MGP_C57BL6NJ_P0031728 Gas2l2 protein_coding protein_coding MGP_C57BL6NJ_T0028209.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1030787 1041778 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028210.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1030790 1043044 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028211.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1030937 1042664 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028212.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1031107 1046887 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028213.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1031107 1048574 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028214.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1031107 1048574 + MGP_C57BL6NJ_P0028214 Sec14l4 protein_coding protein_coding MGP_C57BL6NJ_T0028215.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1031166 1046887 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0028216.1 MGP_C57BL6NJ_G0018365.1 mouse_genomes_project 11 1041061 1046887 + Sec14l4 protein_coding processed_transcript MGP_C57BL6NJ_T0012896.1 MGP_C57BL6NJ_G0010941.1 mouse_genomes_project 11 50150089 50150631 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012939.1 MGP_C57BL6NJ_G0010984.1 mouse_genomes_project 11 63013230 63013947 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003377.1 MGP_C57BL6NJ_G0003115.1 mouse_genomes_project 11 79060345 79060871 + Gm16075 antisense antisense MGP_C57BL6NJ_T0029447.1 MGP_C57BL6NJ_G0018675.1 mouse_genomes_project 11 53124288 53155703 - MGP_C57BL6NJ_P0029447 Tcf7 protein_coding protein_coding MGP_C57BL6NJ_T0000976.1 MGP_C57BL6NJ_G0000886.1 mouse_genomes_project 11 30840820 30841185 + TEC TEC MGP_C57BL6NJ_T0030954.1 MGP_C57BL6NJ_G0019036.1 mouse_genomes_project 11 75650275 75668875 - MGP_C57BL6NJ_P0030954 Cyb5d2 protein_coding protein_coding MGP_C57BL6NJ_T0030955.1 MGP_C57BL6NJ_G0019036.1 mouse_genomes_project 11 75650288 75668721 - MGP_C57BL6NJ_P0030955 Cyb5d2 protein_coding protein_coding MGP_C57BL6NJ_T0030956.1 MGP_C57BL6NJ_G0019036.1 mouse_genomes_project 11 75651921 75669113 - Cyb5d2 protein_coding processed_transcript MGP_C57BL6NJ_T0030957.1 MGP_C57BL6NJ_G0019036.1 mouse_genomes_project 11 75665907 75668860 - Cyb5d2 protein_coding retained_intron MGP_C57BL6NJ_T0012791.1 MGP_C57BL6NJ_G0010836.1 mouse_genomes_project 11 14392371 14393437 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031098.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77988645 77996204 + MGP_C57BL6NJ_P0031098 Tsr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031099.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77988652 78000606 + MGP_C57BL6NJ_P0031099 Tsr1 protein_coding protein_coding MGP_C57BL6NJ_T0031100.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77988672 77993119 + Tsr1 protein_coding retained_intron MGP_C57BL6NJ_T0031101.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77988688 77999758 + MGP_C57BL6NJ_P0031101 Tsr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031102.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77992976 77995169 + Tsr1 protein_coding retained_intron MGP_C57BL6NJ_T0031103.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77995233 77999578 + MGP_C57BL6NJ_P0031103 Tsr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031104.1 MGP_C57BL6NJ_G0019092.1 mouse_genomes_project 11 77996474 77999607 + Tsr1 protein_coding retained_intron MGP_C57BL6NJ_T0017669.1 MGP_C57BL6NJ_G0015572.1 mouse_genomes_project 11 69306130 69319629 + Gm12299 processed_transcript processed_transcript MGP_C57BL6NJ_T0031305.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80564028 80752169 + MGP_C57BL6NJ_P0031305 Ssh2 protein_coding protein_coding MGP_C57BL6NJ_T0031306.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80564028 80820015 + MGP_C57BL6NJ_P0031306 Ssh2 protein_coding protein_coding MGP_C57BL6NJ_T0031307.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80705565 80709008 + Ssh2 protein_coding retained_intron MGP_C57BL6NJ_T0031308.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80707099 80774855 + Ssh2 protein_coding processed_transcript MGP_C57BL6NJ_T0031309.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80707101 80815313 + MGP_C57BL6NJ_P0031309 Ssh2 protein_coding protein_coding MGP_C57BL6NJ_T0031310.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80707107 80793203 + Ssh2 protein_coding retained_intron MGP_C57BL6NJ_T0031311.1 MGP_C57BL6NJ_G0019136.1 mouse_genomes_project 11 80750452 80753019 + Ssh2 protein_coding retained_intron MGP_C57BL6NJ_T0029365.1 MGP_C57BL6NJ_G0018654.1 mouse_genomes_project 11 51888339 51891333 + MGP_C57BL6NJ_P0029365 Olfr1371 protein_coding protein_coding MGP_C57BL6NJ_T0030395.1 MGP_C57BL6NJ_G0018918.1 mouse_genomes_project 11 71858394 71860208 + MGP_C57BL6NJ_P0030395 Trappc1 protein_coding protein_coding MGP_C57BL6NJ_T0030396.1 MGP_C57BL6NJ_G0018918.1 mouse_genomes_project 11 71858477 71860208 + MGP_C57BL6NJ_P0030396 Trappc1 protein_coding protein_coding MGP_C57BL6NJ_T0030397.1 MGP_C57BL6NJ_G0018918.1 mouse_genomes_project 11 71858489 71860208 + MGP_C57BL6NJ_P0030397 Trappc1 protein_coding protein_coding MGP_C57BL6NJ_T0030398.1 MGP_C57BL6NJ_G0018918.1 mouse_genomes_project 11 71858571 71860208 + MGP_C57BL6NJ_P0030398 Trappc1 protein_coding protein_coding MGP_C57BL6NJ_T0030399.1 MGP_C57BL6NJ_G0018918.1 mouse_genomes_project 11 71858852 71859647 + Trappc1 protein_coding processed_transcript MGP_C57BL6NJ_T0012998.1 MGP_C57BL6NJ_G0011043.1 mouse_genomes_project 11 86515921 86517024 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013011.1 MGP_C57BL6NJ_G0011056.1 mouse_genomes_project 11 91776533 91777913 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009844.1 MGP_C57BL6NJ_G0007929.1 mouse_genomes_project 11 2123507 2123611 + miRNA miRNA MGP_C57BL6NJ_T0028616.1 MGP_C57BL6NJ_G0018460.1 mouse_genomes_project 11 18899245 19021472 + MGP_C57BL6NJ_P0028616 Sertad2 protein_coding protein_coding MGP_C57BL6NJ_T0028617.1 MGP_C57BL6NJ_G0018460.1 mouse_genomes_project 11 19000119 19021472 + MGP_C57BL6NJ_P0028617 Sertad2 protein_coding protein_coding MGP_C57BL6NJ_T0028618.1 MGP_C57BL6NJ_G0018460.1 mouse_genomes_project 11 19015312 19017223 + MGP_C57BL6NJ_P0028618 Sertad2 protein_coding protein_coding MGP_C57BL6NJ_T0030015.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432311 63497254 - MGP_C57BL6NJ_P0030015 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030016.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432311 63497238 - MGP_C57BL6NJ_P0030016 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030017.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432311 63497238 - MGP_C57BL6NJ_P0030017 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030018.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432311 63497254 - MGP_C57BL6NJ_P0030018 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030019.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432312 63497256 - MGP_C57BL6NJ_P0030019 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030020.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63432312 63497256 - MGP_C57BL6NJ_P0030020 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030021.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63438229 63463553 - MGP_C57BL6NJ_P0030021 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030022.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63449845 63461493 - MGP_C57BL6NJ_P0030022 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030023.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63451573 63463722 - Epn2 protein_coding retained_intron MGP_C57BL6NJ_T0030024.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63463685 63497227 - MGP_C57BL6NJ_P0030024 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030025.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63463871 63497227 - MGP_C57BL6NJ_P0030025 Epn2 protein_coding protein_coding MGP_C57BL6NJ_T0030026.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63463928 63497231 - Epn2 protein_coding processed_transcript MGP_C57BL6NJ_T0030027.1 MGP_C57BL6NJ_G0018834.1 mouse_genomes_project 11 63472854 63497239 - Epn2 protein_coding processed_transcript MGP_C57BL6NJ_T0012841.1 MGP_C57BL6NJ_G0010886.1 mouse_genomes_project 11 26954749 26957832 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031765.1 MGP_C57BL6NJ_G0019255.1 mouse_genomes_project 11 87916739 87942943 + MGP_C57BL6NJ_P0031765 Ddx52 protein_coding protein_coding MGP_C57BL6NJ_T0031766.1 MGP_C57BL6NJ_G0019255.1 mouse_genomes_project 11 87922797 87930266 + Ddx52 protein_coding processed_transcript MGP_C57BL6NJ_T0030893.1 MGP_C57BL6NJ_G0019020.1 mouse_genomes_project 11 74839307 74933922 - MGP_C57BL6NJ_P0030893 Pitpnm3 protein_coding protein_coding MGP_C57BL6NJ_T0030894.1 MGP_C57BL6NJ_G0019020.1 mouse_genomes_project 11 74839307 74933865 - MGP_C57BL6NJ_P0030894 Pitpnm3 protein_coding protein_coding MGP_C57BL6NJ_T0030895.1 MGP_C57BL6NJ_G0019020.1 mouse_genomes_project 11 74842888 74843829 - Pitpnm3 protein_coding processed_transcript MGP_C57BL6NJ_T0030896.1 MGP_C57BL6NJ_G0019020.1 mouse_genomes_project 11 74849098 74853015 - Pitpnm3 protein_coding retained_intron MGP_C57BL6NJ_T0030897.1 MGP_C57BL6NJ_G0019020.1 mouse_genomes_project 11 74859257 74933922 - Pitpnm3 protein_coding retained_intron MGP_C57BL6NJ_T0032324.1 MGP_C57BL6NJ_G0019387.1 mouse_genomes_project 11 101366684 101372930 + MGP_C57BL6NJ_P0032324 protein_coding protein_coding MGP_C57BL6NJ_T0032325.1 MGP_C57BL6NJ_G0019387.1 mouse_genomes_project 11 101367185 101372930 + MGP_C57BL6NJ_P0032325 protein_coding protein_coding MGP_C57BL6NJ_T0006465.1 MGP_C57BL6NJ_G0005391.1 mouse_genomes_project 11 91324371 91325073 - Gm11479 lincRNA lincRNA MGP_C57BL6NJ_T0029301.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022180 51032735 + MGP_C57BL6NJ_P0029301 Hnrnph1 protein_coding protein_coding MGP_C57BL6NJ_T0029302.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022909 51032734 + MGP_C57BL6NJ_P0029302 Hnrnph1 protein_coding protein_coding MGP_C57BL6NJ_T0029303.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022941 51032735 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029304.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022955 51028991 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029305.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022959 51032306 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029306.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022959 51029577 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029307.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51022959 51032735 + MGP_C57BL6NJ_P0029307 Hnrnph1 protein_coding protein_coding MGP_C57BL6NJ_T0029308.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51023481 51028522 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029309.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51023481 51027355 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029310.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51023481 51026575 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029311.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51023491 51032308 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029312.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51029331 51030645 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029313.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51029471 51030418 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029314.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51029563 51032555 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029315.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51029626 51030305 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029316.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51030196 51031078 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0029317.1 MGP_C57BL6NJ_G0018638.1 mouse_genomes_project 11 51031347 51032555 + Hnrnph1 protein_coding processed_transcript MGP_C57BL6NJ_T0033110.1 MGP_C57BL6NJ_G0019613.1 mouse_genomes_project 11 108368360 108372321 + Nags protein_coding processed_transcript MGP_C57BL6NJ_T0033111.1 MGP_C57BL6NJ_G0019613.1 mouse_genomes_project 11 108368396 108372321 + MGP_C57BL6NJ_P0033111 Nags protein_coding protein_coding MGP_C57BL6NJ_T0033112.1 MGP_C57BL6NJ_G0019613.1 mouse_genomes_project 11 108369213 108372321 + Nags protein_coding processed_transcript MGP_C57BL6NJ_T0030540.1 MGP_C57BL6NJ_G0018955.1 mouse_genomes_project 11 72488515 72491661 - MGP_C57BL6NJ_P0030540 Kctd11 protein_coding protein_coding MGP_C57BL6NJ_T0028904.1 MGP_C57BL6NJ_G0018524.1 mouse_genomes_project 11 31429309 31434827 + MGP_C57BL6NJ_P0028904 Mpg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028905.1 MGP_C57BL6NJ_G0018524.1 mouse_genomes_project 11 31429315 31435505 + MGP_C57BL6NJ_P0028905 Mpg protein_coding protein_coding MGP_C57BL6NJ_T0028906.1 MGP_C57BL6NJ_G0018524.1 mouse_genomes_project 11 31429334 31431202 + Mpg protein_coding retained_intron MGP_C57BL6NJ_T0028907.1 MGP_C57BL6NJ_G0018524.1 mouse_genomes_project 11 31429343 31434049 + MGP_C57BL6NJ_P0028907 Mpg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032718.1 MGP_C57BL6NJ_G0019497.1 mouse_genomes_project 11 105429603 105431923 - MGP_C57BL6NJ_P0032718 Gm11938 protein_coding protein_coding MGP_C57BL6NJ_T0030178.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67908030 68010884 - MGP_C57BL6NJ_P0030178 Map2k4 protein_coding protein_coding MGP_C57BL6NJ_T0030179.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67910120 67940945 - MGP_C57BL6NJ_P0030179 Map2k4 protein_coding protein_coding MGP_C57BL6NJ_T0030180.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67911515 67917374 - Map2k4 protein_coding processed_transcript MGP_C57BL6NJ_T0030181.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67916647 68010872 - MGP_C57BL6NJ_P0030181 Map2k4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030182.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67932330 68010873 - MGP_C57BL6NJ_P0030182 Map2k4 protein_coding protein_coding MGP_C57BL6NJ_T0030183.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67932331 68010872 - MGP_C57BL6NJ_P0030183 Map2k4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030184.1 MGP_C57BL6NJ_G0018869.1 mouse_genomes_project 11 67940880 67966766 - Map2k4 protein_coding processed_transcript MGP_C57BL6NJ_T0032752.1 MGP_C57BL6NJ_G0019529.1 mouse_genomes_project 11 105995813 106000406 - Krt32 protein_coding processed_transcript MGP_C57BL6NJ_T0032753.1 MGP_C57BL6NJ_G0019529.1 mouse_genomes_project 11 105995822 106003197 - MGP_C57BL6NJ_P0032753 Krt32 protein_coding protein_coding MGP_C57BL6NJ_T0030441.1 MGP_C57BL6NJ_G0018930.1 mouse_genomes_project 11 72172904 72178998 - MGP_C57BL6NJ_P0030441 Atp1b2 protein_coding protein_coding MGP_C57BL6NJ_T0030442.1 MGP_C57BL6NJ_G0018930.1 mouse_genomes_project 11 72172909 72179111 - Atp1b2 protein_coding processed_transcript MGP_C57BL6NJ_T0030443.1 MGP_C57BL6NJ_G0018930.1 mouse_genomes_project 11 72173834 72175910 - MGP_C57BL6NJ_P0030443 Atp1b2 protein_coding protein_coding MGP_C57BL6NJ_T0030444.1 MGP_C57BL6NJ_G0018930.1 mouse_genomes_project 11 72174526 72176782 - Atp1b2 protein_coding processed_transcript MGP_C57BL6NJ_T0030445.1 MGP_C57BL6NJ_G0018930.1 mouse_genomes_project 11 72175312 72176331 - Atp1b2 protein_coding processed_transcript MGP_C57BL6NJ_T0012844.1 MGP_C57BL6NJ_G0010889.1 mouse_genomes_project 11 28283970 28284198 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009915.1 MGP_C57BL6NJ_G0008000.1 mouse_genomes_project 11 82266101 82266198 - Gm23840 miRNA miRNA MGP_C57BL6NJ_T0012849.1 MGP_C57BL6NJ_G0010894.1 mouse_genomes_project 11 28973278 28974094 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033276.1 MGP_C57BL6NJ_G0019638.1 mouse_genomes_project 11 109190204 109194217 + MGP_C57BL6NJ_P0033276 Ccdc103 protein_coding protein_coding MGP_C57BL6NJ_T0033277.1 MGP_C57BL6NJ_G0019638.1 mouse_genomes_project 11 109190245 109193524 + MGP_C57BL6NJ_P0033277 Ccdc103 protein_coding protein_coding MGP_C57BL6NJ_T0031936.1 MGP_C57BL6NJ_G0019291.1 mouse_genomes_project 11 91339249 91358759 - MGP_C57BL6NJ_P0031936 Prr11 protein_coding protein_coding MGP_C57BL6NJ_T0029486.1 MGP_C57BL6NJ_G0018687.1 mouse_genomes_project 11 54448422 54449153 - MGP_C57BL6NJ_P0029486 Gm9837 protein_coding protein_coding MGP_C57BL6NJ_T0029731.1 MGP_C57BL6NJ_G0018761.1 mouse_genomes_project 11 60325116 60327337 - MGP_C57BL6NJ_P0029731 Olfr317 protein_coding protein_coding MGP_C57BL6NJ_T0033802.1 MGP_C57BL6NJ_G0019761.1 mouse_genomes_project 11 122642867 122663254 - MGP_C57BL6NJ_P0033802 Cd300ld2 protein_coding protein_coding MGP_C57BL6NJ_T0033804.1 MGP_C57BL6NJ_G0019761.1 mouse_genomes_project 11 122660735 122663254 - MGP_C57BL6NJ_P0033804 Cd300ld2 protein_coding protein_coding MGP_C57BL6NJ_T0006356.1 MGP_C57BL6NJ_G0005306.1 mouse_genomes_project 11 23131741 23431426 + lincRNA lincRNA MGP_C57BL6NJ_T0101058.1 MGP_C57BL6NJ_G0039104.1 mouse_genomes_project 11 81634546 81634611 - Snord42a snoRNA snoRNA MGP_C57BL6NJ_T0009967.1 MGP_C57BL6NJ_G0008052.1 mouse_genomes_project 11 127549430 127549520 + Mir1932 miRNA miRNA MGP_C57BL6NJ_T0012754.1 MGP_C57BL6NJ_G0010799.1 mouse_genomes_project 11 1119701 1120171 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012833.1 MGP_C57BL6NJ_G0010878.1 mouse_genomes_project 11 25505682 25506151 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030766.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347549 73348421 + Rnf167 protein_coding processed_transcript MGP_C57BL6NJ_T0030767.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347601 73351728 + MGP_C57BL6NJ_P0030767 Rnf167 protein_coding protein_coding MGP_C57BL6NJ_T0030768.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347601 73351719 + MGP_C57BL6NJ_P0030768 Rnf167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030769.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347869 73350080 + MGP_C57BL6NJ_P0030769 Rnf167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030770.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347875 73351717 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0030771.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73347883 73348569 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0030772.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73348257 73350649 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0030773.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73348389 73351398 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0030774.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73349436 73349847 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0030775.1 MGP_C57BL6NJ_G0018999.1 mouse_genomes_project 11 73350250 73350649 + Rnf167 protein_coding retained_intron MGP_C57BL6NJ_T0028424.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3495593 3565583 + MGP_C57BL6NJ_P0028424 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028425.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3495601 3501638 + Ogdh protein_coding retained_intron MGP_C57BL6NJ_T0028426.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3495626 3565519 + MGP_C57BL6NJ_P0028426 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028427.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3495628 3565533 + MGP_C57BL6NJ_P0028427 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028428.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3495945 3519267 + MGP_C57BL6NJ_P0028428 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028429.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3496132 3519151 + MGP_C57BL6NJ_P0028429 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028430.1 MGP_C57BL6NJ_G0018413.1 mouse_genomes_project 11 3496565 3565533 + MGP_C57BL6NJ_P0028430 Ogdh protein_coding protein_coding MGP_C57BL6NJ_T0028206.1 MGP_C57BL6NJ_G0018364.1 mouse_genomes_project 11 979733 995515 + MGP_C57BL6NJ_P0028206 Gal3st1 protein_coding protein_coding MGP_C57BL6NJ_T0028207.1 MGP_C57BL6NJ_G0018364.1 mouse_genomes_project 11 979810 995504 + MGP_C57BL6NJ_P0028207 Gal3st1 protein_coding protein_coding MGP_C57BL6NJ_T0028208.1 MGP_C57BL6NJ_G0018364.1 mouse_genomes_project 11 986383 995497 + MGP_C57BL6NJ_P0028208 Gal3st1 protein_coding protein_coding MGP_C57BL6NJ_T0009953.1 MGP_C57BL6NJ_G0008038.1 mouse_genomes_project 11 112209972 112210089 + Gm23990 miRNA miRNA MGP_C57BL6NJ_T0034621.1 MGP_C57BL6NJ_G0019917.1 mouse_genomes_project 11 129000246 129004786 - MGP_C57BL6NJ_P0034621 Cbr2 protein_coding protein_coding MGP_C57BL6NJ_T0034622.1 MGP_C57BL6NJ_G0019917.1 mouse_genomes_project 11 129000261 129002777 - Cbr2 protein_coding retained_intron MGP_C57BL6NJ_T0034623.1 MGP_C57BL6NJ_G0019917.1 mouse_genomes_project 11 129000536 129004616 - MGP_C57BL6NJ_P0034623 Cbr2 protein_coding protein_coding MGP_C57BL6NJ_T0034624.1 MGP_C57BL6NJ_G0019917.1 mouse_genomes_project 11 129002784 129004624 - Cbr2 protein_coding retained_intron MGP_C57BL6NJ_T0031318.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80832200 80839363 - MGP_C57BL6NJ_P0031318 Ankrd13b protein_coding protein_coding MGP_C57BL6NJ_T0031319.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80832200 80853868 - MGP_C57BL6NJ_P0031319 Ankrd13b protein_coding protein_coding MGP_C57BL6NJ_T0031320.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80832202 80835341 - Ankrd13b protein_coding retained_intron MGP_C57BL6NJ_T0031321.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80832202 80853880 - MGP_C57BL6NJ_P0031321 Ankrd13b protein_coding protein_coding MGP_C57BL6NJ_T0031322.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80833830 80839692 - Ankrd13b protein_coding retained_intron MGP_C57BL6NJ_T0031323.1 MGP_C57BL6NJ_G0019138.1 mouse_genomes_project 11 80834487 80839174 - MGP_C57BL6NJ_P0031323 Ankrd13b protein_coding protein_coding MGP_C57BL6NJ_T0003500.1 MGP_C57BL6NJ_G0003212.1 mouse_genomes_project 11 125010616 125012736 - Gm11730 antisense antisense MGP_C57BL6NJ_T0003501.1 MGP_C57BL6NJ_G0003212.1 mouse_genomes_project 11 125010753 125012696 - Gm11730 antisense antisense MGP_C57BL6NJ_T0029189.1 MGP_C57BL6NJ_G0018605.1 mouse_genomes_project 11 49421544 49572151 - protein_coding processed_transcript MGP_C57BL6NJ_T0012946.1 MGP_C57BL6NJ_G0010991.1 mouse_genomes_project 11 64801067 64802284 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032701.1 MGP_C57BL6NJ_G0019482.1 mouse_genomes_project 11 105141167 105149080 - MGP_C57BL6NJ_P0032701 Krt27 protein_coding protein_coding MGP_C57BL6NJ_T0009856.1 MGP_C57BL6NJ_G0007941.1 mouse_genomes_project 11 27725543 27725615 + Mir216a miRNA miRNA MGP_C57BL6NJ_T0003503.1 MGP_C57BL6NJ_G0003214.1 mouse_genomes_project 11 125785042 125786772 - Gm11723 antisense antisense MGP_C57BL6NJ_T0003407.1 MGP_C57BL6NJ_G0003139.1 mouse_genomes_project 11 93342976 93392921 + antisense antisense MGP_C57BL6NJ_T0013023.1 MGP_C57BL6NJ_G0011068.1 mouse_genomes_project 11 98727644 98728114 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013064.1 MGP_C57BL6NJ_G0011109.1 mouse_genomes_project 11 113982521 113983058 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032477.1 MGP_C57BL6NJ_G0019427.1 mouse_genomes_project 11 103165556 103167870 - MGP_C57BL6NJ_P0032477 E130012A19Rik protein_coding protein_coding MGP_C57BL6NJ_T0031000.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76166697 76193628 + MGP_C57BL6NJ_P0031000 Trpv1 protein_coding protein_coding MGP_C57BL6NJ_T0031001.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76170663 76192896 + MGP_C57BL6NJ_P0031001 Trpv1 protein_coding protein_coding MGP_C57BL6NJ_T0031002.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76170663 76192896 + MGP_C57BL6NJ_P0031002 Trpv1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031003.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76172450 76193631 + MGP_C57BL6NJ_P0031003 Trpv1 protein_coding protein_coding MGP_C57BL6NJ_T0031004.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76172714 76187268 + MGP_C57BL6NJ_P0031004 Trpv1 protein_coding protein_coding MGP_C57BL6NJ_T0031005.1 MGP_C57BL6NJ_G0019049.1 mouse_genomes_project 11 76184754 76186668 + Trpv1 protein_coding processed_transcript MGP_C57BL6NJ_T0006456.1 MGP_C57BL6NJ_G0005386.1 mouse_genomes_project 11 87134962 87137253 + lincRNA lincRNA MGP_C57BL6NJ_T0006457.1 MGP_C57BL6NJ_G0005386.1 mouse_genomes_project 11 87134962 87140002 + lincRNA lincRNA MGP_C57BL6NJ_T0006458.1 MGP_C57BL6NJ_G0005386.1 mouse_genomes_project 11 87135532 87135977 + lincRNA lincRNA MGP_C57BL6NJ_T0012058.1 MGP_C57BL6NJ_G0010141.1 mouse_genomes_project 11 61341005 61342265 + MGP_C57BL6NJ_P0012058 Olfr225 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0034324.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126577556 127015764 - MGP_C57BL6NJ_P0034324 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034325.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126577558 126860920 - MGP_C57BL6NJ_P0034325 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034326.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126578949 127015786 - MGP_C57BL6NJ_P0034326 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034327.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126578949 127017805 - MGP_C57BL6NJ_P0034327 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034328.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126578997 127015764 - MGP_C57BL6NJ_P0034328 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034329.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126579788 127015766 - MGP_C57BL6NJ_P0034329 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034330.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126584291 126596090 - MGP_C57BL6NJ_P0034330 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034331.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126591578 126662528 - MGP_C57BL6NJ_P0034331 Rbfox3 protein_coding protein_coding MGP_C57BL6NJ_T0034332.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126914839 126994908 - Rbfox3 protein_coding processed_transcript MGP_C57BL6NJ_T0034333.1 MGP_C57BL6NJ_G0019862.1 mouse_genomes_project 11 126914841 127014219 - Rbfox3 protein_coding processed_transcript MGP_C57BL6NJ_T0028865.1 MGP_C57BL6NJ_G0018513.1 mouse_genomes_project 11 30057518 30067861 - MGP_C57BL6NJ_P0028865 Chac2 protein_coding protein_coding MGP_C57BL6NJ_T0028866.1 MGP_C57BL6NJ_G0018513.1 mouse_genomes_project 11 30057763 30067845 - MGP_C57BL6NJ_P0028866 Chac2 protein_coding protein_coding MGP_C57BL6NJ_T0003466.1 MGP_C57BL6NJ_G0003186.1 mouse_genomes_project 11 112692765 112693945 - Taco1os antisense antisense MGP_C57BL6NJ_T0034458.1 MGP_C57BL6NJ_G0019885.1 mouse_genomes_project 11 128458480 128518801 + MGP_C57BL6NJ_P0034458 Bahcc1 protein_coding protein_coding MGP_C57BL6NJ_T0034459.1 MGP_C57BL6NJ_G0019885.1 mouse_genomes_project 11 128458480 128518815 + MGP_C57BL6NJ_P0034459 Bahcc1 protein_coding protein_coding MGP_C57BL6NJ_T0034460.1 MGP_C57BL6NJ_G0019885.1 mouse_genomes_project 11 128461978 128462818 + Bahcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0034461.1 MGP_C57BL6NJ_G0019885.1 mouse_genomes_project 11 128462232 128518801 + MGP_C57BL6NJ_P0034461 Bahcc1 protein_coding protein_coding MGP_C57BL6NJ_T0034462.1 MGP_C57BL6NJ_G0019885.1 mouse_genomes_project 11 128515231 128518686 + Bahcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0003311.1 MGP_C57BL6NJ_G0003061.1 mouse_genomes_project 11 54047753 54062098 - antisense antisense MGP_C57BL6NJ_T0012903.1 MGP_C57BL6NJ_G0010948.1 mouse_genomes_project 11 51851313 51852552 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029627.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56378976 56402740 + MGP_C57BL6NJ_P0029627 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029628.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56379003 56410750 + MGP_C57BL6NJ_P0029628 protein_coding protein_coding MGP_C57BL6NJ_T0029629.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56379015 56388872 + protein_coding processed_transcript MGP_C57BL6NJ_T0029630.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56379027 56396699 + MGP_C57BL6NJ_P0029630 protein_coding protein_coding MGP_C57BL6NJ_T0029631.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56379029 56408257 + MGP_C57BL6NJ_P0029631 protein_coding protein_coding MGP_C57BL6NJ_T0029632.1 MGP_C57BL6NJ_G0018720.1 mouse_genomes_project 11 56388404 56407099 + MGP_C57BL6NJ_P0029632 protein_coding protein_coding MGP_C57BL6NJ_T0000978.1 MGP_C57BL6NJ_G0000888.1 mouse_genomes_project 11 45364825 45365128 - TEC TEC MGP_C57BL6NJ_T0030667.1 MGP_C57BL6NJ_G0018976.1 mouse_genomes_project 11 72835395 72839635 - MGP_C57BL6NJ_P0030667 Slc16a13 protein_coding protein_coding MGP_C57BL6NJ_T0030668.1 MGP_C57BL6NJ_G0018976.1 mouse_genomes_project 11 72837344 72839449 - MGP_C57BL6NJ_P0030668 Slc16a13 protein_coding protein_coding MGP_C57BL6NJ_T0030669.1 MGP_C57BL6NJ_G0018976.1 mouse_genomes_project 11 72837782 72839705 - MGP_C57BL6NJ_P0030669 Slc16a13 protein_coding protein_coding MGP_C57BL6NJ_T0030670.1 MGP_C57BL6NJ_G0018976.1 mouse_genomes_project 11 72837895 72839425 - MGP_C57BL6NJ_P0030670 Slc16a13 protein_coding protein_coding MGP_C57BL6NJ_T0013046.1 MGP_C57BL6NJ_G0011091.1 mouse_genomes_project 11 108332706 108333031 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028736.1 MGP_C57BL6NJ_G0018486.1 mouse_genomes_project 11 22519949 22553558 - MGP_C57BL6NJ_P0028736 Papolg protein_coding protein_coding MGP_C57BL6NJ_T0028737.1 MGP_C57BL6NJ_G0018486.1 mouse_genomes_project 11 22522547 22525774 - MGP_C57BL6NJ_P0028737 Papolg protein_coding protein_coding MGP_C57BL6NJ_T0028738.1 MGP_C57BL6NJ_G0018486.1 mouse_genomes_project 11 22523714 22550209 - Papolg protein_coding processed_transcript MGP_C57BL6NJ_T0028739.1 MGP_C57BL6NJ_G0018486.1 mouse_genomes_project 11 22527368 22553541 - MGP_C57BL6NJ_P0028739 Papolg protein_coding protein_coding MGP_C57BL6NJ_T0032013.1 MGP_C57BL6NJ_G0019307.1 mouse_genomes_project 11 92218430 92230693 - MGP_C57BL6NJ_P0032013 Epx protein_coding protein_coding MGP_C57BL6NJ_T0032014.1 MGP_C57BL6NJ_G0019307.1 mouse_genomes_project 11 92224529 92226925 - Epx protein_coding processed_transcript MGP_C57BL6NJ_T0009936.1 MGP_C57BL6NJ_G0008021.1 mouse_genomes_project 11 103297864 103298003 + Mir8102 miRNA miRNA MGP_C57BL6NJ_T0034268.1 MGP_C57BL6NJ_G0019848.1 mouse_genomes_project 11 125859165 125865695 + MGP_C57BL6NJ_P0034268 Birc5 protein_coding protein_coding MGP_C57BL6NJ_T0034269.1 MGP_C57BL6NJ_G0019848.1 mouse_genomes_project 11 125859233 125865706 + MGP_C57BL6NJ_P0034269 Birc5 protein_coding protein_coding MGP_C57BL6NJ_T0032490.1 MGP_C57BL6NJ_G0019431.1 mouse_genomes_project 11 103251640 103263194 + MGP_C57BL6NJ_P0032490 Psmb3 protein_coding protein_coding MGP_C57BL6NJ_T0032491.1 MGP_C57BL6NJ_G0019431.1 mouse_genomes_project 11 103251675 103256306 + Psmb3 protein_coding retained_intron MGP_C57BL6NJ_T0032492.1 MGP_C57BL6NJ_G0019431.1 mouse_genomes_project 11 103261755 103263194 + Psmb3 protein_coding retained_intron MGP_C57BL6NJ_T0013015.1 MGP_C57BL6NJ_G0011060.1 mouse_genomes_project 11 92904581 92905110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032972.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383319 107397310 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0032973.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383319 107397318 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0032974.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383319 107397344 - MGP_C57BL6NJ_P0032974 Becn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032975.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383321 107397328 - MGP_C57BL6NJ_P0032975 Becn1 protein_coding protein_coding MGP_C57BL6NJ_T0032976.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383933 107397295 - MGP_C57BL6NJ_P0032976 Becn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032977.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107383945 107389099 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0032978.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107384937 107387556 - Becn1 protein_coding processed_transcript MGP_C57BL6NJ_T0032979.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107385541 107396795 - MGP_C57BL6NJ_P0032979 Becn1 protein_coding protein_coding MGP_C57BL6NJ_T0032980.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107386440 107391365 - MGP_C57BL6NJ_P0032980 Becn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032981.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107386556 107397296 - MGP_C57BL6NJ_P0032981 Becn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032982.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107386587 107390494 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0032983.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107390604 107397264 - MGP_C57BL6NJ_P0032983 Becn1 protein_coding protein_coding MGP_C57BL6NJ_T0032984.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107390964 107397307 - MGP_C57BL6NJ_P0032984 Becn1 protein_coding protein_coding MGP_C57BL6NJ_T0032985.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107391283 107397298 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0032986.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107393134 107397313 - Becn1 protein_coding processed_transcript MGP_C57BL6NJ_T0032987.1 MGP_C57BL6NJ_G0019584.1 mouse_genomes_project 11 107396518 107397299 - Becn1 protein_coding retained_intron MGP_C57BL6NJ_T0028970.1 MGP_C57BL6NJ_G0018545.1 mouse_genomes_project 11 33412155 33457360 + MGP_C57BL6NJ_P0028970 Lcp2 protein_coding protein_coding MGP_C57BL6NJ_T0028971.1 MGP_C57BL6NJ_G0018545.1 mouse_genomes_project 11 33412387 33455291 + MGP_C57BL6NJ_P0028971 Lcp2 protein_coding protein_coding MGP_C57BL6NJ_T0028972.1 MGP_C57BL6NJ_G0018545.1 mouse_genomes_project 11 33412420 33457345 + MGP_C57BL6NJ_P0028972 Lcp2 protein_coding protein_coding MGP_C57BL6NJ_T0028973.1 MGP_C57BL6NJ_G0018545.1 mouse_genomes_project 11 33443450 33443866 + Lcp2 protein_coding processed_transcript MGP_C57BL6NJ_T0028974.1 MGP_C57BL6NJ_G0018545.1 mouse_genomes_project 11 33452157 33455820 + Lcp2 protein_coding processed_transcript MGP_C57BL6NJ_T0028271.1 MGP_C57BL6NJ_G0018379.1 mouse_genomes_project 11 1747688 1750058 - MGP_C57BL6NJ_P0028271 Uqcr10 protein_coding protein_coding MGP_C57BL6NJ_T0028272.1 MGP_C57BL6NJ_G0018379.1 mouse_genomes_project 11 1747690 1750050 - Uqcr10 protein_coding processed_transcript MGP_C57BL6NJ_T0028273.1 MGP_C57BL6NJ_G0018379.1 mouse_genomes_project 11 1747697 1749769 - Uqcr10 protein_coding processed_transcript MGP_C57BL6NJ_T0032351.1 MGP_C57BL6NJ_G0019399.1 mouse_genomes_project 11 101712529 101715775 + MGP_C57BL6NJ_P0032351 Hoxb4 protein_coding protein_coding MGP_C57BL6NJ_T0006353.1 MGP_C57BL6NJ_G0005303.1 mouse_genomes_project 11 22746973 22747782 + Gm12063 lincRNA lincRNA MGP_C57BL6NJ_T0003350.1 MGP_C57BL6NJ_G0003094.1 mouse_genomes_project 11 64979131 64981615 - Tvp23bos antisense antisense MGP_C57BL6NJ_T0030288.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71295025 71341256 - MGP_C57BL6NJ_P0030288 Ndel1 protein_coding protein_coding MGP_C57BL6NJ_T0030289.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71295701 71321377 - Ndel1 protein_coding processed_transcript MGP_C57BL6NJ_T0030290.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71310197 71361239 - MGP_C57BL6NJ_P0030290 Ndel1 protein_coding protein_coding MGP_C57BL6NJ_T0030291.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71310212 71341162 - MGP_C57BL6NJ_P0030291 Ndel1 protein_coding protein_coding MGP_C57BL6NJ_T0030292.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71317626 71348120 - Ndel1 protein_coding processed_transcript MGP_C57BL6NJ_T0030293.1 MGP_C57BL6NJ_G0018897.1 mouse_genomes_project 11 71321370 71353120 - Ndel1 protein_coding processed_transcript MGP_C57BL6NJ_T0009848.1 MGP_C57BL6NJ_G0007933.1 mouse_genomes_project 11 19785133 19785221 - Mir1933 miRNA miRNA MGP_C57BL6NJ_T0030295.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71390852 71393804 + MGP_C57BL6NJ_P0030295 Rpl26 protein_coding protein_coding MGP_C57BL6NJ_T0030296.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71390879 71393780 + MGP_C57BL6NJ_P0030296 Rpl26 protein_coding protein_coding MGP_C57BL6NJ_T0030297.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71390896 71392589 + MGP_C57BL6NJ_P0030297 Rpl26 protein_coding protein_coding MGP_C57BL6NJ_T0030298.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71390904 71393803 + MGP_C57BL6NJ_P0030298 Rpl26 protein_coding protein_coding MGP_C57BL6NJ_T0030299.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71392122 71393803 + Rpl26 protein_coding retained_intron MGP_C57BL6NJ_T0030300.1 MGP_C57BL6NJ_G0018899.1 mouse_genomes_project 11 71392503 71396250 + Rpl26 protein_coding processed_transcript MGP_C57BL6NJ_T0030907.1 MGP_C57BL6NJ_G0019023.1 mouse_genomes_project 11 75023506 75025975 + MGP_C57BL6NJ_P0030907 Txndc17 protein_coding protein_coding MGP_C57BL6NJ_T0030908.1 MGP_C57BL6NJ_G0019023.1 mouse_genomes_project 11 75023574 75024637 + Txndc17 protein_coding retained_intron MGP_C57BL6NJ_T0033493.1 MGP_C57BL6NJ_G0019692.1 mouse_genomes_project 11 112895655 112902649 + MGP_C57BL6NJ_P0033493 Psmc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033494.1 MGP_C57BL6NJ_G0019692.1 mouse_genomes_project 11 112895655 112902649 + MGP_C57BL6NJ_P0033494 Psmc5 protein_coding protein_coding MGP_C57BL6NJ_T0031140.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78530747 78545376 - MGP_C57BL6NJ_P0031140 Serpinf1 protein_coding protein_coding MGP_C57BL6NJ_T0031141.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78531042 78540462 - MGP_C57BL6NJ_P0031141 Serpinf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031142.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78531199 78538196 - MGP_C57BL6NJ_P0031142 Serpinf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031143.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78536379 78545261 - MGP_C57BL6NJ_P0031143 Serpinf1 protein_coding protein_coding MGP_C57BL6NJ_T0031144.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78536438 78537661 - Serpinf1 protein_coding retained_intron MGP_C57BL6NJ_T0031145.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78537386 78545230 - MGP_C57BL6NJ_P0031145 Serpinf1 protein_coding protein_coding MGP_C57BL6NJ_T0031146.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78537935 78545227 - MGP_C57BL6NJ_P0031146 Serpinf1 protein_coding protein_coding MGP_C57BL6NJ_T0031147.1 MGP_C57BL6NJ_G0019101.1 mouse_genomes_project 11 78538781 78540763 - MGP_C57BL6NJ_P0031147 Serpinf1 protein_coding protein_coding MGP_C57BL6NJ_T0098809.1 MGP_C57BL6NJ_G0036873.1 mouse_genomes_project 11 120804141 120808179 + pseudogene pseudogene MGP_C57BL6NJ_T0033098.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108274582 108307677 - MGP_C57BL6NJ_P0033098 Mpp2 protein_coding protein_coding MGP_C57BL6NJ_T0033099.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108275091 108301671 - MGP_C57BL6NJ_P0033099 Mpp2 protein_coding protein_coding MGP_C57BL6NJ_T0033100.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108279627 108301606 - Mpp2 protein_coding processed_transcript MGP_C57BL6NJ_T0033101.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108282206 108304924 - Mpp2 protein_coding retained_intron MGP_C57BL6NJ_T0033102.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108299838 108307629 - Mpp2 protein_coding processed_transcript MGP_C57BL6NJ_T0033103.1 MGP_C57BL6NJ_G0019610.1 mouse_genomes_project 11 108299892 108307617 - Mpp2 protein_coding processed_transcript MGP_C57BL6NJ_T0031716.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87216208 87251359 + MGP_C57BL6NJ_P0031716 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0031717.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87219667 87325546 + MGP_C57BL6NJ_P0031717 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0031718.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87219887 87262882 + Ap2b1 protein_coding retained_intron MGP_C57BL6NJ_T0031719.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87219918 87319108 + MGP_C57BL6NJ_P0031719 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0031720.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87219958 87323523 + MGP_C57BL6NJ_P0031720 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0031721.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87220136 87234751 + MGP_C57BL6NJ_P0031721 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0031722.1 MGP_C57BL6NJ_G0019237.1 mouse_genomes_project 11 87225422 87323155 + MGP_C57BL6NJ_P0031722 Ap2b1 protein_coding protein_coding MGP_C57BL6NJ_T0009943.1 MGP_C57BL6NJ_G0008028.1 mouse_genomes_project 11 107042463 107042533 + Mir6928 miRNA miRNA MGP_C57BL6NJ_T0006438.1 MGP_C57BL6NJ_G0005373.1 mouse_genomes_project 11 74710117 74721767 - 4930401O10Rik lincRNA lincRNA MGP_C57BL6NJ_T0033438.1 MGP_C57BL6NJ_G0019677.1 mouse_genomes_project 11 111963288 112057046 - MGP_C57BL6NJ_P0033438 March10 protein_coding protein_coding MGP_C57BL6NJ_T0033439.1 MGP_C57BL6NJ_G0019677.1 mouse_genomes_project 11 111966235 111974075 - March10 protein_coding processed_transcript MGP_C57BL6NJ_T0033440.1 MGP_C57BL6NJ_G0019677.1 mouse_genomes_project 11 111999969 112012708 - MGP_C57BL6NJ_P0033440 March10 protein_coding protein_coding MGP_C57BL6NJ_T0033441.1 MGP_C57BL6NJ_G0019677.1 mouse_genomes_project 11 112004926 112062385 - MGP_C57BL6NJ_P0033441 March10 protein_coding protein_coding MGP_C57BL6NJ_T0102742.1 MGP_C57BL6NJ_G0040537.1 mouse_genomes_project 11 76359036 76359126 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0028178.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 612954 653743 + MGP_C57BL6NJ_P0028178 Morc2a protein_coding protein_coding MGP_C57BL6NJ_T0028179.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 613219 632851 + MGP_C57BL6NJ_P0028179 Morc2a protein_coding protein_coding MGP_C57BL6NJ_T0028180.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 613713 653849 + MGP_C57BL6NJ_P0028180 Morc2a protein_coding protein_coding MGP_C57BL6NJ_T0028181.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 643347 647280 + Morc2a protein_coding processed_transcript MGP_C57BL6NJ_T0028182.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 643707 644592 + Morc2a protein_coding processed_transcript MGP_C57BL6NJ_T0028183.1 MGP_C57BL6NJ_G0018356.1 mouse_genomes_project 11 643802 647062 + Morc2a protein_coding processed_transcript MGP_C57BL6NJ_T0013059.1 MGP_C57BL6NJ_G0011104.1 mouse_genomes_project 11 111749838 111751683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012755.1 MGP_C57BL6NJ_G0010800.1 mouse_genomes_project 11 1141321 1143133 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031392.1 MGP_C57BL6NJ_G0019151.1 mouse_genomes_project 11 81466624 81472211 + MGP_C57BL6NJ_P0031392 Dhrs13 protein_coding protein_coding MGP_C57BL6NJ_T0031393.1 MGP_C57BL6NJ_G0019151.1 mouse_genomes_project 11 81466693 81472136 + MGP_C57BL6NJ_P0031393 Dhrs13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031394.1 MGP_C57BL6NJ_G0019151.1 mouse_genomes_project 11 81466696 81472209 + MGP_C57BL6NJ_P0031394 Dhrs13 protein_coding protein_coding MGP_C57BL6NJ_T0031395.1 MGP_C57BL6NJ_G0019151.1 mouse_genomes_project 11 81466703 81467822 + MGP_C57BL6NJ_P0031395 Dhrs13 protein_coding protein_coding MGP_C57BL6NJ_T0102730.1 MGP_C57BL6NJ_G0040525.1 mouse_genomes_project 11 30276291 30282848 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0029736.1 MGP_C57BL6NJ_G0018765.1 mouse_genomes_project 11 60381080 60385140 + MGP_C57BL6NJ_P0029736 Olfr314 protein_coding protein_coding MGP_C57BL6NJ_T0029737.1 MGP_C57BL6NJ_G0018765.1 mouse_genomes_project 11 60384258 60385389 + MGP_C57BL6NJ_P0029737 Olfr314 protein_coding protein_coding MGP_C57BL6NJ_T0029720.1 MGP_C57BL6NJ_G0018753.1 mouse_genomes_project 11 60113690 60114584 + MGP_C57BL6NJ_P0029720 Olfr325 protein_coding protein_coding MGP_C57BL6NJ_T0032630.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104436651 104451372 + Thra protein_coding processed_transcript MGP_C57BL6NJ_T0032631.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104436814 104451631 + Thra protein_coding processed_transcript MGP_C57BL6NJ_T0032632.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104436917 104451435 + Thra protein_coding processed_transcript MGP_C57BL6NJ_T0032633.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104437824 104457018 + Thra protein_coding processed_transcript MGP_C57BL6NJ_T0032634.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104437824 104473840 + MGP_C57BL6NJ_P0032634 Thra protein_coding protein_coding MGP_C57BL6NJ_T0032635.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104437886 104468382 + MGP_C57BL6NJ_P0032635 Thra protein_coding protein_coding MGP_C57BL6NJ_T0032636.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104438171 104456318 + MGP_C57BL6NJ_P0032636 Thra protein_coding protein_coding MGP_C57BL6NJ_T0032637.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104440246 104451770 + Thra protein_coding processed_transcript MGP_C57BL6NJ_T0032638.1 MGP_C57BL6NJ_G0019464.1 mouse_genomes_project 11 104451578 104473237 + MGP_C57BL6NJ_P0032638 Thra protein_coding protein_coding MGP_C57BL6NJ_T0003495.1 MGP_C57BL6NJ_G0003210.1 mouse_genomes_project 11 124345687 124349512 - Gm29292 antisense antisense MGP_C57BL6NJ_T0032791.1 MGP_C57BL6NJ_G0019544.1 mouse_genomes_project 11 106372474 106378855 - MGP_C57BL6NJ_P0032791 P3h4 protein_coding protein_coding MGP_C57BL6NJ_T0032792.1 MGP_C57BL6NJ_G0019544.1 mouse_genomes_project 11 106373384 106375893 - MGP_C57BL6NJ_P0032792 P3h4 protein_coding protein_coding MGP_C57BL6NJ_T0099754.1 MGP_C57BL6NJ_G0037800.1 mouse_genomes_project 11 55588058 55588166 + Gm24198 snRNA snRNA MGP_C57BL6NJ_T0029418.1 MGP_C57BL6NJ_G0018668.1 mouse_genomes_project 11 52783817 52795376 + MGP_C57BL6NJ_P0029418 Cdkn2aipnl protein_coding protein_coding MGP_C57BL6NJ_T0029419.1 MGP_C57BL6NJ_G0018668.1 mouse_genomes_project 11 52784048 52794286 + MGP_C57BL6NJ_P0029419 Cdkn2aipnl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032117.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98906680 98944639 + MGP_C57BL6NJ_P0032117 Mbtd1 protein_coding protein_coding MGP_C57BL6NJ_T0032118.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98906920 98944649 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032119.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98907021 98931272 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032120.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98907022 98932733 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032121.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98907031 98970996 + MGP_C57BL6NJ_P0032121 Mbtd1 protein_coding protein_coding MGP_C57BL6NJ_T0032122.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98907694 98953442 + MGP_C57BL6NJ_P0032122 Mbtd1 protein_coding protein_coding MGP_C57BL6NJ_T0032123.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98927547 98969577 + MGP_C57BL6NJ_P0032123 Mbtd1 protein_coding protein_coding MGP_C57BL6NJ_T0032124.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98932317 98935585 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032125.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98935579 98955945 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032126.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98940919 98955654 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032127.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98946230 98949483 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0032128.1 MGP_C57BL6NJ_G0019338.1 mouse_genomes_project 11 98948703 98962864 + Mbtd1 protein_coding processed_transcript MGP_C57BL6NJ_T0012873.1 MGP_C57BL6NJ_G0010918.1 mouse_genomes_project 11 40347618 40348084 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013029.1 MGP_C57BL6NJ_G0011074.1 mouse_genomes_project 11 102309858 102310665 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033056.1 MGP_C57BL6NJ_G0019602.1 mouse_genomes_project 11 107921846 107924624 + Dhx8 protein_coding retained_intron MGP_C57BL6NJ_T0033057.1 MGP_C57BL6NJ_G0019602.1 mouse_genomes_project 11 107921877 107957676 + MGP_C57BL6NJ_P0033057 Dhx8 protein_coding protein_coding MGP_C57BL6NJ_T0033058.1 MGP_C57BL6NJ_G0019602.1 mouse_genomes_project 11 107921956 107923367 + Dhx8 protein_coding retained_intron MGP_C57BL6NJ_T0033059.1 MGP_C57BL6NJ_G0019602.1 mouse_genomes_project 11 107921968 107957125 + MGP_C57BL6NJ_P0033059 Dhx8 protein_coding protein_coding MGP_C57BL6NJ_T0033060.1 MGP_C57BL6NJ_G0019602.1 mouse_genomes_project 11 107940088 107941486 + Dhx8 protein_coding retained_intron MGP_C57BL6NJ_T0009927.1 MGP_C57BL6NJ_G0008012.1 mouse_genomes_project 11 96917048 96917117 - Gm22702 miRNA miRNA MGP_C57BL6NJ_T0009871.1 MGP_C57BL6NJ_G0007956.1 mouse_genomes_project 11 52929574 52929685 - Gm24157 miRNA miRNA MGP_C57BL6NJ_T0028930.1 MGP_C57BL6NJ_G0018529.1 mouse_genomes_project 11 31518680 31519490 + MGP_C57BL6NJ_P0028930 protein_coding protein_coding MGP_C57BL6NJ_T0028931.1 MGP_C57BL6NJ_G0018529.1 mouse_genomes_project 11 31518819 31519447 + protein_coding retained_intron MGP_C57BL6NJ_T0012983.1 MGP_C57BL6NJ_G0011028.1 mouse_genomes_project 11 81032233 81033000 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033466.1 MGP_C57BL6NJ_G0019684.1 mouse_genomes_project 11 112693700 112701252 + MGP_C57BL6NJ_P0033466 Taco1 protein_coding protein_coding MGP_C57BL6NJ_T0006375.1 MGP_C57BL6NJ_G0005319.1 mouse_genomes_project 11 32049625 32050589 - 4930555O08Rik lincRNA lincRNA MGP_C57BL6NJ_T0033595.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114381698 114417459 + Helz protein_coding processed_transcript MGP_C57BL6NJ_T0033596.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114381724 114519366 + MGP_C57BL6NJ_P0033596 Helz protein_coding protein_coding MGP_C57BL6NJ_T0033597.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114381728 114536945 + MGP_C57BL6NJ_P0033597 Helz protein_coding protein_coding MGP_C57BL6NJ_T0033598.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114381736 114543828 + MGP_C57BL6NJ_P0033598 Helz protein_coding protein_coding MGP_C57BL6NJ_T0033599.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114473480 114519366 + MGP_C57BL6NJ_P0033599 Helz protein_coding protein_coding MGP_C57BL6NJ_T0033600.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114481581 114493175 + Helz protein_coding processed_transcript MGP_C57BL6NJ_T0033601.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114518130 114520168 + Helz protein_coding processed_transcript MGP_C57BL6NJ_T0033602.1 MGP_C57BL6NJ_G0019713.1 mouse_genomes_project 11 114520133 114536515 + Helz protein_coding processed_transcript MGP_C57BL6NJ_T0028222.1 MGP_C57BL6NJ_G0018367.1 mouse_genomes_project 11 1099096 1106183 - MGP_C57BL6NJ_P0028222 Mtfp1 protein_coding protein_coding MGP_C57BL6NJ_T0028223.1 MGP_C57BL6NJ_G0018367.1 mouse_genomes_project 11 1102050 1102757 - Mtfp1 protein_coding processed_transcript MGP_C57BL6NJ_T0033020.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107634843 107702158 - MGP_C57BL6NJ_P0033020 Brca1 protein_coding protein_coding MGP_C57BL6NJ_T0033021.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107644114 107655841 - Brca1 protein_coding retained_intron MGP_C57BL6NJ_T0033022.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107660185 107669931 - Brca1 protein_coding retained_intron MGP_C57BL6NJ_T0033023.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107671664 107672330 - MGP_C57BL6NJ_P0033023 Brca1 protein_coding protein_coding MGP_C57BL6NJ_T0033024.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107671678 107672678 - Brca1 protein_coding processed_transcript MGP_C57BL6NJ_T0033025.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107672978 107702234 - MGP_C57BL6NJ_P0033025 Brca1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033026.1 MGP_C57BL6NJ_G0019597.1 mouse_genomes_project 11 107680444 107701861 - MGP_C57BL6NJ_P0033026 Brca1 protein_coding protein_coding MGP_C57BL6NJ_T0009890.1 MGP_C57BL6NJ_G0007975.1 mouse_genomes_project 11 72213285 72213405 - Mir467f miRNA miRNA MGP_C57BL6NJ_T0029439.1 MGP_C57BL6NJ_G0018672.1 mouse_genomes_project 11 52988640 53006477 - MGP_C57BL6NJ_P0029439 Olfr1382 protein_coding protein_coding MGP_C57BL6NJ_T0017712.1 MGP_C57BL6NJ_G0015594.1 mouse_genomes_project 11 102510576 102513318 - Gm11574 processed_transcript processed_transcript MGP_C57BL6NJ_T0099788.1 MGP_C57BL6NJ_G0037834.1 mouse_genomes_project 11 98418651 98418758 - Gm24856 snRNA snRNA MGP_C57BL6NJ_T0012891.1 MGP_C57BL6NJ_G0010936.1 mouse_genomes_project 11 49028818 49029349 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033263.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109146362 109189968 - MGP_C57BL6NJ_P0033263 Eftud2 protein_coding protein_coding MGP_C57BL6NJ_T0033264.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109146362 109189986 - MGP_C57BL6NJ_P0033264 Eftud2 protein_coding protein_coding MGP_C57BL6NJ_T0033265.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109146366 109152117 - MGP_C57BL6NJ_P0033265 Eftud2 protein_coding protein_coding MGP_C57BL6NJ_T0033266.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109146690 109186715 - MGP_C57BL6NJ_P0033266 Eftud2 protein_coding protein_coding MGP_C57BL6NJ_T0033267.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109146727 109149137 - MGP_C57BL6NJ_P0033267 Eftud2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033268.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109147339 109148565 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033269.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109148100 109155878 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033270.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109157092 109168117 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033271.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109170506 109186691 - MGP_C57BL6NJ_P0033271 Eftud2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033272.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109171761 109173866 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033273.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109173758 109189965 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033274.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109177763 109186716 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0033275.1 MGP_C57BL6NJ_G0019637.1 mouse_genomes_project 11 109185964 109189936 - Eftud2 protein_coding retained_intron MGP_C57BL6NJ_T0012861.1 MGP_C57BL6NJ_G0010906.1 mouse_genomes_project 11 32152713 32153292 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032597.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104196716 104205494 + MGP_C57BL6NJ_P0032597 Zpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032598.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104196749 104205494 + MGP_C57BL6NJ_P0032598 Zpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032599.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104196769 104205485 + MGP_C57BL6NJ_P0032599 Zpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032600.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104196771 104205485 + MGP_C57BL6NJ_P0032600 Zpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032601.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104196797 104205362 + MGP_C57BL6NJ_P0032601 Zpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032602.1 MGP_C57BL6NJ_G0019457.1 mouse_genomes_project 11 104202271 104205214 + Zpbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0013031.1 MGP_C57BL6NJ_G0011076.1 mouse_genomes_project 11 102562074 102562468 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030686.1 MGP_C57BL6NJ_G0018980.1 mouse_genomes_project 11 72856766 72858423 - MGP_C57BL6NJ_P0030686 Rnasek protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030687.1 MGP_C57BL6NJ_G0018980.1 mouse_genomes_project 11 72856766 72858485 - MGP_C57BL6NJ_P0030687 Rnasek protein_coding protein_coding MGP_C57BL6NJ_T0030688.1 MGP_C57BL6NJ_G0018980.1 mouse_genomes_project 11 72856769 72857701 - MGP_C57BL6NJ_P0030688 Rnasek protein_coding protein_coding MGP_C57BL6NJ_T0032331.1 MGP_C57BL6NJ_G0019389.1 mouse_genomes_project 11 101399354 101417303 - MGP_C57BL6NJ_P0032331 Ube2z protein_coding protein_coding MGP_C57BL6NJ_T0013066.1 MGP_C57BL6NJ_G0011111.1 mouse_genomes_project 11 115299198 115299684 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003486.1 MGP_C57BL6NJ_G0003202.1 mouse_genomes_project 11 116805785 116811421 + Gm11683 antisense antisense MGP_C57BL6NJ_T0029883.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129560 62173095 + MGP_C57BL6NJ_P0029883 Lrrc48 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029884.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129773 62148393 + MGP_C57BL6NJ_P0029884 Lrrc48 protein_coding protein_coding MGP_C57BL6NJ_T0029885.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129773 62173198 + MGP_C57BL6NJ_P0029885 Lrrc48 protein_coding protein_coding MGP_C57BL6NJ_T0029886.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129773 62154503 + MGP_C57BL6NJ_P0029886 Lrrc48 protein_coding protein_coding MGP_C57BL6NJ_T0029887.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129801 62152364 + Lrrc48 protein_coding processed_transcript MGP_C57BL6NJ_T0029888.1 MGP_C57BL6NJ_G0018807.1 mouse_genomes_project 11 62129824 62173190 + MGP_C57BL6NJ_P0029888 Lrrc48 protein_coding protein_coding MGP_C57BL6NJ_T0099777.1 MGP_C57BL6NJ_G0037823.1 mouse_genomes_project 11 87448962 87449069 + Gm23247 snRNA snRNA MGP_C57BL6NJ_T0006521.1 MGP_C57BL6NJ_G0005430.1 mouse_genomes_project 11 120513309 120521532 - 4732490B19Rik lincRNA lincRNA MGP_C57BL6NJ_T0017608.1 MGP_C57BL6NJ_G0015541.1 mouse_genomes_project 11 478373 484651 + Gm11946 processed_transcript processed_transcript MGP_C57BL6NJ_T0017609.1 MGP_C57BL6NJ_G0015541.1 mouse_genomes_project 11 479164 485073 + Gm11946 processed_transcript processed_transcript MGP_C57BL6NJ_T0017723.1 MGP_C57BL6NJ_G0015604.1 mouse_genomes_project 11 110109785 110134884 + C130046K22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017724.1 MGP_C57BL6NJ_G0015604.1 mouse_genomes_project 11 110109785 110115078 + C130046K22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0028649.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20048224 20148468 + MGP_C57BL6NJ_P0028649 Wdpcp protein_coding protein_coding MGP_C57BL6NJ_T0028650.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20048224 20402877 + MGP_C57BL6NJ_P0028650 Wdpcp protein_coding protein_coding MGP_C57BL6NJ_T0028651.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20048294 20189180 + Wdpcp protein_coding processed_transcript MGP_C57BL6NJ_T0028652.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20181194 20203434 + Wdpcp protein_coding processed_transcript MGP_C57BL6NJ_T0028653.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20186740 20241921 + Wdpcp protein_coding processed_transcript MGP_C57BL6NJ_T0028654.1 MGP_C57BL6NJ_G0018467.1 mouse_genomes_project 11 20311077 20314945 + Wdpcp protein_coding processed_transcript MGP_C57BL6NJ_T0029267.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50753529 50795881 + MGP_C57BL6NJ_P0029267 Tbc1d9b protein_coding protein_coding MGP_C57BL6NJ_T0029268.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50753529 50796636 + MGP_C57BL6NJ_P0029268 Tbc1d9b protein_coding protein_coding MGP_C57BL6NJ_T0029269.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50753535 50762563 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0029270.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50757531 50762673 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0029271.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50767287 50772311 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0029272.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50768676 50773546 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0029273.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50770236 50772070 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0029274.1 MGP_C57BL6NJ_G0018630.1 mouse_genomes_project 11 50784654 50787087 + Tbc1d9b protein_coding processed_transcript MGP_C57BL6NJ_T0031776.1 MGP_C57BL6NJ_G0019257.1 mouse_genomes_project 11 88031238 88054504 - MGP_C57BL6NJ_P0031776 Dusp14 protein_coding protein_coding MGP_C57BL6NJ_T0031777.1 MGP_C57BL6NJ_G0019257.1 mouse_genomes_project 11 88031238 88054060 - MGP_C57BL6NJ_P0031777 Dusp14 protein_coding protein_coding MGP_C57BL6NJ_T0031778.1 MGP_C57BL6NJ_G0019257.1 mouse_genomes_project 11 88031242 88054282 - MGP_C57BL6NJ_P0031778 Dusp14 protein_coding protein_coding MGP_C57BL6NJ_T0031779.1 MGP_C57BL6NJ_G0019257.1 mouse_genomes_project 11 88031611 88052783 - MGP_C57BL6NJ_P0031779 Dusp14 protein_coding protein_coding MGP_C57BL6NJ_T0031780.1 MGP_C57BL6NJ_G0019257.1 mouse_genomes_project 11 88032177 88054964 - MGP_C57BL6NJ_P0031780 Dusp14 protein_coding protein_coding MGP_C57BL6NJ_T0003460.1 MGP_C57BL6NJ_G0003181.1 mouse_genomes_project 11 110712688 110721140 - Gm11659 antisense antisense MGP_C57BL6NJ_T0006414.1 MGP_C57BL6NJ_G0005354.1 mouse_genomes_project 11 63819329 63821494 + Gm26964 lincRNA lincRNA MGP_C57BL6NJ_T0031346.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81181003 81290707 + MGP_C57BL6NJ_P0031346 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031347.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81181058 81197899 + Myo18a protein_coding retained_intron MGP_C57BL6NJ_T0031348.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81183360 81195110 + MGP_C57BL6NJ_P0031348 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031349.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81184493 81290707 + MGP_C57BL6NJ_P0031349 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031350.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81189914 81290707 + MGP_C57BL6NJ_P0031350 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031351.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81194968 81290707 + MGP_C57BL6NJ_P0031351 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031352.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81194968 81290707 + MGP_C57BL6NJ_P0031352 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031353.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81194996 81289869 + MGP_C57BL6NJ_P0031353 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031354.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81194996 81289870 + MGP_C57BL6NJ_P0031354 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031355.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81195019 81289575 + MGP_C57BL6NJ_P0031355 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031357.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221076 81290564 + MGP_C57BL6NJ_P0031357 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031358.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221115 81233806 + MGP_C57BL6NJ_P0031358 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031359.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221128 81290707 + MGP_C57BL6NJ_P0031359 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031360.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221128 81289836 + MGP_C57BL6NJ_P0031360 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031361.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221153 81289783 + MGP_C57BL6NJ_P0031361 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031362.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81221153 81289564 + MGP_C57BL6NJ_P0031362 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031363.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81232751 81290707 + MGP_C57BL6NJ_P0031363 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031364.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81245771 81248859 + Myo18a protein_coding processed_transcript MGP_C57BL6NJ_T0031365.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81259308 81262790 + Myo18a protein_coding processed_transcript MGP_C57BL6NJ_T0031366.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81262154 81268136 + Myo18a protein_coding retained_intron MGP_C57BL6NJ_T0031367.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81272708 81278183 + Myo18a protein_coding retained_intron MGP_C57BL6NJ_T0031368.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81273913 81278054 + Myo18a protein_coding retained_intron MGP_C57BL6NJ_T0031369.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81278592 81284089 + MGP_C57BL6NJ_P0031369 Myo18a protein_coding protein_coding MGP_C57BL6NJ_T0031370.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81282205 81289803 + Myo18a protein_coding retained_intron MGP_C57BL6NJ_T0031371.1 MGP_C57BL6NJ_G0019146.1 mouse_genomes_project 11 81285013 81289922 + Myo18a protein_coding processed_transcript MGP_C57BL6NJ_T0028627.1 MGP_C57BL6NJ_G0018462.1 mouse_genomes_project 11 19227848 19235329 - MGP_C57BL6NJ_P0028627 Lgalsl protein_coding protein_coding MGP_C57BL6NJ_T0028628.1 MGP_C57BL6NJ_G0018462.1 mouse_genomes_project 11 19230622 19235028 - Lgalsl protein_coding processed_transcript MGP_C57BL6NJ_T0028629.1 MGP_C57BL6NJ_G0018462.1 mouse_genomes_project 11 19233584 19235329 - Lgalsl protein_coding processed_transcript MGP_C57BL6NJ_T0028630.1 MGP_C57BL6NJ_G0018462.1 mouse_genomes_project 11 19234069 19235295 - Lgalsl protein_coding processed_transcript MGP_C57BL6NJ_T0012984.1 MGP_C57BL6NJ_G0011029.1 mouse_genomes_project 11 81162363 81164316 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034443.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128316636 128364889 - MGP_C57BL6NJ_P0034443 Slc38a10 protein_coding protein_coding MGP_C57BL6NJ_T0034444.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128317117 128364621 - MGP_C57BL6NJ_P0034444 Slc38a10 protein_coding protein_coding MGP_C57BL6NJ_T0034445.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128318297 128319665 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034446.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128318354 128321265 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034447.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128318468 128323123 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034448.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128318481 128323135 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034449.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128318549 128323004 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034450.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128321213 128323015 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034451.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128323680 128364822 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034452.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128331548 128364889 - MGP_C57BL6NJ_P0034452 Slc38a10 protein_coding protein_coding MGP_C57BL6NJ_T0034453.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128336520 128364889 - MGP_C57BL6NJ_P0034453 Slc38a10 protein_coding protein_coding MGP_C57BL6NJ_T0034454.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128345536 128364863 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034455.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128348353 128364830 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034456.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128351516 128364865 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0034457.1 MGP_C57BL6NJ_G0019884.1 mouse_genomes_project 11 128352655 128356331 - Slc38a10 protein_coding processed_transcript MGP_C57BL6NJ_T0012863.1 MGP_C57BL6NJ_G0010908.1 mouse_genomes_project 11 32480831 32481278 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012859.1 MGP_C57BL6NJ_G0010904.1 mouse_genomes_project 11 31382914 31383536 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003356.1 MGP_C57BL6NJ_G0003099.1 mouse_genomes_project 11 66196633 66200409 + 2810001G20Rik antisense antisense MGP_C57BL6NJ_T0003357.1 MGP_C57BL6NJ_G0003099.1 mouse_genomes_project 11 66196731 66200409 + 2810001G20Rik antisense antisense MGP_C57BL6NJ_T0029754.1 MGP_C57BL6NJ_G0018776.1 mouse_genomes_project 11 60612690 60614836 + MGP_C57BL6NJ_P0029754 Hist3h2a protein_coding protein_coding MGP_C57BL6NJ_T0030172.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67350846 67452175 - MGP_C57BL6NJ_P0030172 Myocd protein_coding protein_coding MGP_C57BL6NJ_T0030173.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67350859 67452223 - MGP_C57BL6NJ_P0030173 Myocd protein_coding protein_coding MGP_C57BL6NJ_T0030174.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67351058 67356443 - Myocd protein_coding processed_transcript MGP_C57BL6NJ_T0030175.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67352713 67392848 - MGP_C57BL6NJ_P0030175 Myocd protein_coding protein_coding MGP_C57BL6NJ_T0030176.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67370378 67379728 - MGP_C57BL6NJ_P0030176 Myocd protein_coding protein_coding MGP_C57BL6NJ_T0030177.1 MGP_C57BL6NJ_G0018868.1 mouse_genomes_project 11 67398022 67452088 - Myocd protein_coding processed_transcript MGP_C57BL6NJ_T0032716.1 MGP_C57BL6NJ_G0019495.1 mouse_genomes_project 11 105399597 105400476 - MGP_C57BL6NJ_P0032716 Krtap1-3 protein_coding protein_coding MGP_C57BL6NJ_T0013025.1 MGP_C57BL6NJ_G0011070.1 mouse_genomes_project 11 100733437 100733613 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032062.1 MGP_C57BL6NJ_G0019321.1 mouse_genomes_project 11 93494445 93543360 + MGP_C57BL6NJ_P0032062 Coil protein_coding protein_coding MGP_C57BL6NJ_T0032063.1 MGP_C57BL6NJ_G0019321.1 mouse_genomes_project 11 93521604 93543360 + MGP_C57BL6NJ_P0032063 Coil protein_coding protein_coding MGP_C57BL6NJ_T0032064.1 MGP_C57BL6NJ_G0019321.1 mouse_genomes_project 11 93535107 93542701 + Coil protein_coding retained_intron MGP_C57BL6NJ_T0029526.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54805970 54820942 - Gm12216 protein_coding processed_transcript MGP_C57BL6NJ_T0029527.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54806843 54892066 - Gm12216 protein_coding processed_transcript MGP_C57BL6NJ_T0029528.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54809167 54892178 - MGP_C57BL6NJ_P0029528 Gm12216 protein_coding protein_coding MGP_C57BL6NJ_T0029529.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54830171 54892151 - Gm12216 protein_coding processed_transcript MGP_C57BL6NJ_T0029530.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54838115 54892178 - MGP_C57BL6NJ_P0029530 Gm12216 protein_coding protein_coding MGP_C57BL6NJ_T0029531.1 MGP_C57BL6NJ_G0018698.1 mouse_genomes_project 11 54841817 54892178 - MGP_C57BL6NJ_P0029531 Gm12216 protein_coding protein_coding MGP_C57BL6NJ_T0006540.1 MGP_C57BL6NJ_G0005445.1 mouse_genomes_project 11 127225881 127232875 - Gm11754 lincRNA lincRNA MGP_C57BL6NJ_T0032360.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878071 102186711 + MGP_C57BL6NJ_P0032360 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032361.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878071 102186900 + MGP_C57BL6NJ_P0032361 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032362.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878078 101907613 + MGP_C57BL6NJ_P0032362 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032363.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878102 102158518 + Skap1 protein_coding retained_intron MGP_C57BL6NJ_T0032364.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878105 102186711 + MGP_C57BL6NJ_P0032364 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032365.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878111 101996760 + MGP_C57BL6NJ_P0032365 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032366.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101878159 102094645 + MGP_C57BL6NJ_P0032366 Skap1 protein_coding protein_coding MGP_C57BL6NJ_T0032367.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101897781 101907613 + Skap1 protein_coding processed_transcript MGP_C57BL6NJ_T0032368.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 101903853 102129250 + Skap1 protein_coding retained_intron MGP_C57BL6NJ_T0032369.1 MGP_C57BL6NJ_G0019403.1 mouse_genomes_project 11 102133053 102138021 + Skap1 protein_coding retained_intron MGP_C57BL6NJ_T0030446.1 MGP_C57BL6NJ_G0018931.1 mouse_genomes_project 11 72189170 72192272 - MGP_C57BL6NJ_P0030446 Shbg protein_coding protein_coding MGP_C57BL6NJ_T0030447.1 MGP_C57BL6NJ_G0018931.1 mouse_genomes_project 11 72190014 72191307 - Shbg protein_coding processed_transcript MGP_C57BL6NJ_T0101034.1 MGP_C57BL6NJ_G0039080.1 mouse_genomes_project 11 49265597 49265665 + Snord95 snoRNA snoRNA MGP_C57BL6NJ_T0031610.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080928 84087608 + Psmd11 protein_coding retained_intron MGP_C57BL6NJ_T0031611.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080936 84129436 + MGP_C57BL6NJ_P0031611 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031612.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080938 84131769 + MGP_C57BL6NJ_P0031612 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031613.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080949 84129121 + MGP_C57BL6NJ_P0031613 Psmd11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031614.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080957 84129833 + Psmd11 protein_coding retained_intron MGP_C57BL6NJ_T0031615.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080959 84099931 + MGP_C57BL6NJ_P0031615 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031616.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080978 84114981 + MGP_C57BL6NJ_P0031616 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031617.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080999 84110533 + MGP_C57BL6NJ_P0031617 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031618.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080999 84129066 + MGP_C57BL6NJ_P0031618 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031619.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84080999 84124934 + MGP_C57BL6NJ_P0031619 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031620.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84081003 84110714 + MGP_C57BL6NJ_P0031620 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031621.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84082190 84110718 + MGP_C57BL6NJ_P0031621 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031622.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84110658 84129402 + MGP_C57BL6NJ_P0031622 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031623.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84114998 84129241 + MGP_C57BL6NJ_P0031623 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031624.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84116950 84131769 + MGP_C57BL6NJ_P0031624 Psmd11 protein_coding protein_coding MGP_C57BL6NJ_T0031625.1 MGP_C57BL6NJ_G0019205.1 mouse_genomes_project 11 84116954 84129168 + MGP_C57BL6NJ_P0031625 Psmd11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009974.1 MGP_C57BL6NJ_G0008059.1 mouse_genomes_project 11 128888686 128888740 - Mir6936 miRNA miRNA MGP_C57BL6NJ_T0003320.1 MGP_C57BL6NJ_G0003069.1 mouse_genomes_project 11 56366646 56372358 - Slc36a1os antisense antisense MGP_C57BL6NJ_T0003321.1 MGP_C57BL6NJ_G0003069.1 mouse_genomes_project 11 56367769 56372540 - Slc36a1os antisense antisense MGP_C57BL6NJ_T0006355.1 MGP_C57BL6NJ_G0005305.1 mouse_genomes_project 11 22891160 22907326 + Gm12066 lincRNA lincRNA MGP_C57BL6NJ_T0031324.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80859645 80877776 + MGP_C57BL6NJ_P0031324 Git1 protein_coding protein_coding MGP_C57BL6NJ_T0031325.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80859645 80877776 + MGP_C57BL6NJ_P0031325 Git1 protein_coding protein_coding MGP_C57BL6NJ_T0031326.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80867411 80873105 + Git1 protein_coding retained_intron MGP_C57BL6NJ_T0031327.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80870977 80875075 + Git1 protein_coding retained_intron MGP_C57BL6NJ_T0031328.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80872468 80874822 + Git1 protein_coding retained_intron MGP_C57BL6NJ_T0031329.1 MGP_C57BL6NJ_G0019139.1 mouse_genomes_project 11 80875125 80876029 + Git1 protein_coding retained_intron MGP_C57BL6NJ_T0030985.1 MGP_C57BL6NJ_G0019044.1 mouse_genomes_project 11 76088467 76100732 + MGP_C57BL6NJ_P0030985 P2rx5 protein_coding protein_coding MGP_C57BL6NJ_T0030986.1 MGP_C57BL6NJ_G0019044.1 mouse_genomes_project 11 76088631 76098545 + MGP_C57BL6NJ_P0030986 P2rx5 protein_coding protein_coding MGP_C57BL6NJ_T0030987.1 MGP_C57BL6NJ_G0019044.1 mouse_genomes_project 11 76088631 76098545 + MGP_C57BL6NJ_P0030987 P2rx5 protein_coding protein_coding MGP_C57BL6NJ_T0003421.1 MGP_C57BL6NJ_G0003149.1 mouse_genomes_project 11 101346225 101348410 + Gm29202 antisense antisense MGP_C57BL6NJ_T0013010.1 MGP_C57BL6NJ_G0011055.1 mouse_genomes_project 11 91578678 91578950 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029769.1 MGP_C57BL6NJ_G0018780.1 mouse_genomes_project 11 60844744 60853144 - MGP_C57BL6NJ_P0029769 Iba57 protein_coding protein_coding MGP_C57BL6NJ_T0029770.1 MGP_C57BL6NJ_G0018780.1 mouse_genomes_project 11 60850527 60852722 - MGP_C57BL6NJ_P0029770 Iba57 protein_coding protein_coding MGP_C57BL6NJ_T0029771.1 MGP_C57BL6NJ_G0018780.1 mouse_genomes_project 11 60850759 60853105 - MGP_C57BL6NJ_P0029771 Iba57 protein_coding protein_coding MGP_C57BL6NJ_T0028608.1 MGP_C57BL6NJ_G0018457.1 mouse_genomes_project 11 18507969 18528770 + Rab1a protein_coding processed_transcript MGP_C57BL6NJ_T0028609.1 MGP_C57BL6NJ_G0018457.1 mouse_genomes_project 11 18508139 18532689 + Rab1a protein_coding processed_transcript MGP_C57BL6NJ_T0028610.1 MGP_C57BL6NJ_G0018457.1 mouse_genomes_project 11 18508160 18535929 + MGP_C57BL6NJ_P0028610 Rab1a protein_coding protein_coding MGP_C57BL6NJ_T0028394.1 MGP_C57BL6NJ_G0018406.1 mouse_genomes_project 11 3128619 3140707 + MGP_C57BL6NJ_P0028394 Ykt6 protein_coding protein_coding MGP_C57BL6NJ_T0028395.1 MGP_C57BL6NJ_G0018406.1 mouse_genomes_project 11 3132230 3136128 + Ykt6 protein_coding processed_transcript MGP_C57BL6NJ_T0032074.1 MGP_C57BL6NJ_G0019326.1 mouse_genomes_project 11 94018859 94050475 - MGP_C57BL6NJ_P0032074 protein_coding protein_coding MGP_C57BL6NJ_T0030187.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68054659 68400984 - MGP_C57BL6NJ_P0030187 Dnah9 protein_coding protein_coding MGP_C57BL6NJ_T0030188.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68054780 68232402 - MGP_C57BL6NJ_P0030188 Dnah9 protein_coding protein_coding MGP_C57BL6NJ_T0030189.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68076144 68084951 - Dnah9 protein_coding retained_intron MGP_C57BL6NJ_T0030190.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68132389 68153354 - MGP_C57BL6NJ_P0030190 Dnah9 protein_coding protein_coding MGP_C57BL6NJ_T0030191.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68350890 68400895 - MGP_C57BL6NJ_P0030191 Dnah9 protein_coding protein_coding MGP_C57BL6NJ_T0030192.1 MGP_C57BL6NJ_G0018871.1 mouse_genomes_project 11 68391214 68401002 - Dnah9 protein_coding retained_intron MGP_C57BL6NJ_T0031641.1 MGP_C57BL6NJ_G0019214.1 mouse_genomes_project 11 85787931 85789745 + MGP_C57BL6NJ_P0031641 Ccl7 protein_coding protein_coding MGP_C57BL6NJ_T0029743.1 MGP_C57BL6NJ_G0018769.1 mouse_genomes_project 11 60481322 60482223 + MGP_C57BL6NJ_P0029743 protein_coding protein_coding MGP_C57BL6NJ_T0012840.1 MGP_C57BL6NJ_G0010885.1 mouse_genomes_project 11 26767795 26768039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009906.1 MGP_C57BL6NJ_G0007991.1 mouse_genomes_project 11 78280136 78280202 + Mir132 miRNA miRNA MGP_C57BL6NJ_T0031235.1 MGP_C57BL6NJ_G0019120.1 mouse_genomes_project 11 79406636 79442332 + Fam57a protein_coding processed_transcript MGP_C57BL6NJ_T0031236.1 MGP_C57BL6NJ_G0019120.1 mouse_genomes_project 11 79429646 79430608 + Fam57a protein_coding retained_intron MGP_C57BL6NJ_T0031237.1 MGP_C57BL6NJ_G0019120.1 mouse_genomes_project 11 79429683 79436779 + MGP_C57BL6NJ_P0031237 Fam57a protein_coding protein_coding MGP_C57BL6NJ_T0031238.1 MGP_C57BL6NJ_G0019120.1 mouse_genomes_project 11 79429716 79436927 + MGP_C57BL6NJ_P0031238 Fam57a protein_coding protein_coding MGP_C57BL6NJ_T0006467.1 MGP_C57BL6NJ_G0005393.1 mouse_genomes_project 11 92447118 92454810 - 2010015M23Rik lincRNA lincRNA MGP_C57BL6NJ_T0033550.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113516130 113526077 - MGP_C57BL6NJ_P0033550 Ddx5 protein_coding protein_coding MGP_C57BL6NJ_T0033551.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113517323 113526039 - MGP_C57BL6NJ_P0033551 Ddx5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033552.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113519531 113526033 - MGP_C57BL6NJ_P0033552 Ddx5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033553.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113519669 113521207 - Ddx5 protein_coding processed_transcript MGP_C57BL6NJ_T0033554.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113520867 113526012 - Ddx5 protein_coding processed_transcript MGP_C57BL6NJ_T0033555.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113521288 113522602 - Ddx5 protein_coding retained_intron MGP_C57BL6NJ_T0033556.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113522698 113523606 - Ddx5 protein_coding processed_transcript MGP_C57BL6NJ_T0033557.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113523051 113526730 - MGP_C57BL6NJ_P0033557 Ddx5 protein_coding protein_coding MGP_C57BL6NJ_T0033558.1 MGP_C57BL6NJ_G0019705.1 mouse_genomes_project 11 113523626 113526428 - MGP_C57BL6NJ_P0033558 Ddx5 protein_coding protein_coding MGP_C57BL6NJ_T0003424.1 MGP_C57BL6NJ_G0003151.1 mouse_genomes_project 11 101730311 101736125 - Gm11536 antisense antisense MGP_C57BL6NJ_T0031631.1 MGP_C57BL6NJ_G0019208.1 mouse_genomes_project 11 84494444 84506337 + MGP_C57BL6NJ_P0031631 Tmem98 protein_coding protein_coding MGP_C57BL6NJ_T0029791.1 MGP_C57BL6NJ_G0018788.1 mouse_genomes_project 11 61076552 61079541 - MGP_C57BL6NJ_P0029791 Prss38 protein_coding protein_coding MGP_C57BL6NJ_T0029420.1 MGP_C57BL6NJ_G0018669.1 mouse_genomes_project 11 52815611 52818518 - protein_coding processed_transcript MGP_C57BL6NJ_T0029421.1 MGP_C57BL6NJ_G0018669.1 mouse_genomes_project 11 52815687 52818801 - protein_coding processed_transcript MGP_C57BL6NJ_T0030619.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72626747 72631973 - MGP_C57BL6NJ_P0030619 Acadvl protein_coding protein_coding MGP_C57BL6NJ_T0030620.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72626753 72627476 - Acadvl protein_coding retained_intron MGP_C57BL6NJ_T0030621.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72626808 72631952 - MGP_C57BL6NJ_P0030621 Acadvl protein_coding protein_coding MGP_C57BL6NJ_T0030622.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72627786 72629139 - Acadvl protein_coding retained_intron MGP_C57BL6NJ_T0030623.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72629753 72631942 - Acadvl protein_coding retained_intron MGP_C57BL6NJ_T0030624.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72630607 72631976 - Acadvl protein_coding retained_intron MGP_C57BL6NJ_T0030625.1 MGP_C57BL6NJ_G0018969.1 mouse_genomes_project 11 72630682 72631964 - Acadvl protein_coding retained_intron MGP_C57BL6NJ_T0034734.1 MGP_C57BL6NJ_G0019945.1 mouse_genomes_project 11 130217469 130224011 + Ptchd3 protein_coding retained_intron MGP_C57BL6NJ_T0034735.1 MGP_C57BL6NJ_G0019945.1 mouse_genomes_project 11 130217469 130230646 + MGP_C57BL6NJ_P0034735 Ptchd3 protein_coding protein_coding MGP_C57BL6NJ_T0003349.1 MGP_C57BL6NJ_G0003093.1 mouse_genomes_project 11 64814015 64820645 + Zfp286os antisense antisense MGP_C57BL6NJ_T0029496.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558391 54593869 + MGP_C57BL6NJ_P0029496 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0029497.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558391 54594731 + MGP_C57BL6NJ_P0029497 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0029498.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558409 54593866 + MGP_C57BL6NJ_P0029498 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0029499.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558538 54593823 + MGP_C57BL6NJ_P0029499 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0029500.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558728 54570144 + Kif3a protein_coding processed_transcript MGP_C57BL6NJ_T0029501.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54558873 54570769 + MGP_C57BL6NJ_P0029501 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0029502.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54570128 54577909 + MGP_C57BL6NJ_P0029502 Kif3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029503.1 MGP_C57BL6NJ_G0018691.1 mouse_genomes_project 11 54584963 54594064 + MGP_C57BL6NJ_P0029503 Kif3a protein_coding protein_coding MGP_C57BL6NJ_T0013080.1 MGP_C57BL6NJ_G0011125.1 mouse_genomes_project 11 123161632 123161791 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032583.1 MGP_C57BL6NJ_G0019453.1 mouse_genomes_project 11 104040133 104071323 + MGP_C57BL6NJ_P0032583 Erbb2 protein_coding protein_coding MGP_C57BL6NJ_T0032584.1 MGP_C57BL6NJ_G0019453.1 mouse_genomes_project 11 104040156 104070684 + Erbb2 protein_coding processed_transcript MGP_C57BL6NJ_T0032585.1 MGP_C57BL6NJ_G0019453.1 mouse_genomes_project 11 104057884 104058377 + Erbb2 protein_coding processed_transcript MGP_C57BL6NJ_T0101018.1 MGP_C57BL6NJ_G0039064.1 mouse_genomes_project 11 13335466 13335596 + Gm25490 snoRNA snoRNA MGP_C57BL6NJ_T0029234.1 MGP_C57BL6NJ_G0018617.1 mouse_genomes_project 11 49876917 49877853 + MGP_C57BL6NJ_P0029234 Olfr1390 protein_coding protein_coding MGP_C57BL6NJ_T0009867.1 MGP_C57BL6NJ_G0007952.1 mouse_genomes_project 11 50505094 50505209 + Gm23492 miRNA miRNA MGP_C57BL6NJ_T0030603.1 MGP_C57BL6NJ_G0018966.1 mouse_genomes_project 11 72607982 72611713 + MGP_C57BL6NJ_P0030603 Gabarap protein_coding protein_coding MGP_C57BL6NJ_T0030604.1 MGP_C57BL6NJ_G0018966.1 mouse_genomes_project 11 72608478 72611702 + MGP_C57BL6NJ_P0030604 Gabarap protein_coding protein_coding MGP_C57BL6NJ_T0030605.1 MGP_C57BL6NJ_G0018966.1 mouse_genomes_project 11 72608523 72611697 + Gabarap protein_coding retained_intron MGP_C57BL6NJ_T0030606.1 MGP_C57BL6NJ_G0018966.1 mouse_genomes_project 11 72608646 72609441 + Gabarap protein_coding processed_transcript MGP_C57BL6NJ_T0101074.1 MGP_C57BL6NJ_G0039120.1 mouse_genomes_project 11 97876413 97876556 + Gm25113 snoRNA snoRNA MGP_C57BL6NJ_T0031672.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86678084 86695040 - MGP_C57BL6NJ_P0031672 Rad51d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031673.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86678349 86695065 - MGP_C57BL6NJ_P0031673 Rad51d protein_coding protein_coding MGP_C57BL6NJ_T0031674.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86680387 86695040 - MGP_C57BL6NJ_P0031674 Rad51d protein_coding protein_coding MGP_C57BL6NJ_T0031675.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86680387 86695040 - MGP_C57BL6NJ_P0031675 Rad51d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031676.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86680387 86695040 - MGP_C57BL6NJ_P0031676 Rad51d protein_coding protein_coding MGP_C57BL6NJ_T0031677.1 MGP_C57BL6NJ_G0019224.1 mouse_genomes_project 11 86680387 86695040 - MGP_C57BL6NJ_P0031677 Rad51d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0012895.1 MGP_C57BL6NJ_G0010940.1 mouse_genomes_project 11 49942058 49942970 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101042.1 MGP_C57BL6NJ_G0039088.1 mouse_genomes_project 11 64631996 64632068 + Snord49a snoRNA snoRNA MGP_C57BL6NJ_T0101056.1 MGP_C57BL6NJ_G0039102.1 mouse_genomes_project 11 80593492 80593580 - Gm24989 snoRNA snoRNA MGP_C57BL6NJ_T0030137.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64901882 64936326 + MGP_C57BL6NJ_P0030137 Fbxw10 protein_coding protein_coding MGP_C57BL6NJ_T0030138.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64901936 64936323 + MGP_C57BL6NJ_P0030138 Fbxw10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030139.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64901936 64936323 + MGP_C57BL6NJ_P0030139 Fbxw10 protein_coding protein_coding MGP_C57BL6NJ_T0030140.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64901941 64907353 + Fbxw10 protein_coding retained_intron MGP_C57BL6NJ_T0030141.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64901945 64936304 + MGP_C57BL6NJ_P0030141 Fbxw10 protein_coding protein_coding MGP_C57BL6NJ_T0030142.1 MGP_C57BL6NJ_G0018856.1 mouse_genomes_project 11 64933719 64935614 + Fbxw10 protein_coding processed_transcript MGP_C57BL6NJ_T0101051.1 MGP_C57BL6NJ_G0039097.1 mouse_genomes_project 11 74635612 74635743 - Gm22927 snoRNA snoRNA MGP_C57BL6NJ_T0102762.1 MGP_C57BL6NJ_G0040557.1 mouse_genomes_project 11 100082811 100083553 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030589.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72583936 72596603 - MGP_C57BL6NJ_P0030589 Elp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030590.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72583938 72597583 - MGP_C57BL6NJ_P0030590 Elp5 protein_coding protein_coding MGP_C57BL6NJ_T0030591.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72583942 72596594 - Elp5 protein_coding retained_intron MGP_C57BL6NJ_T0030592.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72583946 72585212 - Elp5 protein_coding retained_intron MGP_C57BL6NJ_T0030593.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72584955 72596392 - MGP_C57BL6NJ_P0030593 Elp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030594.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72585323 72596592 - Elp5 protein_coding retained_intron MGP_C57BL6NJ_T0030595.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72586520 72596542 - Elp5 protein_coding retained_intron MGP_C57BL6NJ_T0030596.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72586538 72597970 - MGP_C57BL6NJ_P0030596 Elp5 protein_coding protein_coding MGP_C57BL6NJ_T0030597.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72591055 72598848 - MGP_C57BL6NJ_P0030597 Elp5 protein_coding protein_coding MGP_C57BL6NJ_T0030598.1 MGP_C57BL6NJ_G0018964.1 mouse_genomes_project 11 72596365 72597027 - MGP_C57BL6NJ_P0030598 Elp5 protein_coding protein_coding MGP_C57BL6NJ_T0028953.1 MGP_C57BL6NJ_G0018538.1 mouse_genomes_project 11 32508218 32511056 - MGP_C57BL6NJ_P0028953 Tlx3 protein_coding protein_coding MGP_C57BL6NJ_T0102407.1 MGP_C57BL6NJ_G0040328.1 mouse_genomes_project 11 76341039 76347973 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102408.1 MGP_C57BL6NJ_G0040328.1 mouse_genomes_project 11 76341241 76351420 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102409.1 MGP_C57BL6NJ_G0040328.1 mouse_genomes_project 11 76341503 76351452 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0031978.1 MGP_C57BL6NJ_G0019300.1 mouse_genomes_project 11 91949848 91992066 + MGP_C57BL6NJ_P0031978 Hsf5 protein_coding protein_coding MGP_C57BL6NJ_T0029542.1 MGP_C57BL6NJ_G0018702.1 mouse_genomes_project 11 55162950 55176939 - MGP_C57BL6NJ_P0029542 Pdlim4 protein_coding protein_coding MGP_C57BL6NJ_T0029543.1 MGP_C57BL6NJ_G0018702.1 mouse_genomes_project 11 55163943 55172820 - MGP_C57BL6NJ_P0029543 Pdlim4 protein_coding protein_coding MGP_C57BL6NJ_T0029544.1 MGP_C57BL6NJ_G0018702.1 mouse_genomes_project 11 55166974 55176998 - Pdlim4 protein_coding retained_intron MGP_C57BL6NJ_T0029545.1 MGP_C57BL6NJ_G0018702.1 mouse_genomes_project 11 55171746 55172592 - Pdlim4 protein_coding processed_transcript MGP_C57BL6NJ_T0009865.1 MGP_C57BL6NJ_G0007950.1 mouse_genomes_project 11 46413977 46414034 + Mir7239 miRNA miRNA MGP_C57BL6NJ_T0032349.1 MGP_C57BL6NJ_G0019398.1 mouse_genomes_project 11 101697600 101700386 + Hoxb5 protein_coding retained_intron MGP_C57BL6NJ_T0032350.1 MGP_C57BL6NJ_G0019398.1 mouse_genomes_project 11 101697776 101700385 + MGP_C57BL6NJ_P0032350 Hoxb5 protein_coding protein_coding MGP_C57BL6NJ_T0029646.1 MGP_C57BL6NJ_G0018726.1 mouse_genomes_project 11 57273395 57289366 - MGP_C57BL6NJ_P0029646 Nmur2 protein_coding protein_coding MGP_C57BL6NJ_T0006429.1 MGP_C57BL6NJ_G0005366.1 mouse_genomes_project 11 73466679 73475362 - Gm12320 lincRNA lincRNA MGP_C57BL6NJ_T0011567.1 MGP_C57BL6NJ_G0009652.1 mouse_genomes_project 11 89440235 89440533 - Gm22587 misc_RNA misc_RNA MGP_C57BL6NJ_T0033013.1 MGP_C57BL6NJ_G0019594.1 mouse_genomes_project 11 107591138 107601379 + MGP_C57BL6NJ_P0033013 Ifi35 protein_coding protein_coding MGP_C57BL6NJ_T0033014.1 MGP_C57BL6NJ_G0019594.1 mouse_genomes_project 11 107591175 107600806 + Ifi35 protein_coding retained_intron MGP_C57BL6NJ_T0033015.1 MGP_C57BL6NJ_G0019594.1 mouse_genomes_project 11 107591301 107601145 + MGP_C57BL6NJ_P0033015 Ifi35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031928.1 MGP_C57BL6NJ_G0019287.1 mouse_genomes_project 11 91007541 91050641 - MGP_C57BL6NJ_P0031928 Dhx40 protein_coding protein_coding MGP_C57BL6NJ_T0031929.1 MGP_C57BL6NJ_G0019287.1 mouse_genomes_project 11 91014333 91043986 - MGP_C57BL6NJ_P0031929 Dhx40 protein_coding protein_coding MGP_C57BL6NJ_T0031930.1 MGP_C57BL6NJ_G0019287.1 mouse_genomes_project 11 91023762 91028423 - Dhx40 protein_coding processed_transcript MGP_C57BL6NJ_T0031931.1 MGP_C57BL6NJ_G0019287.1 mouse_genomes_project 11 91042480 91049934 - Dhx40 protein_coding processed_transcript MGP_C57BL6NJ_T0009847.1 MGP_C57BL6NJ_G0007932.1 mouse_genomes_project 11 14625881 14625982 - Gm24714 miRNA miRNA MGP_C57BL6NJ_T0030036.1 MGP_C57BL6NJ_G0018838.1 mouse_genomes_project 11 63664947 63699166 - MGP_C57BL6NJ_P0030036 Prpsap2 protein_coding protein_coding MGP_C57BL6NJ_T0030037.1 MGP_C57BL6NJ_G0018838.1 mouse_genomes_project 11 63692563 63699144 - Prpsap2 protein_coding processed_transcript MGP_C57BL6NJ_T0003309.1 MGP_C57BL6NJ_G0003059.1 mouse_genomes_project 11 53104282 53108748 + Gm12207 antisense antisense MGP_C57BL6NJ_T0029147.1 MGP_C57BL6NJ_G0018591.1 mouse_genomes_project 11 46785600 46799546 + MGP_C57BL6NJ_P0029147 Gm12169 protein_coding protein_coding MGP_C57BL6NJ_T0006517.1 MGP_C57BL6NJ_G0005429.1 mouse_genomes_project 11 120341102 120511833 - 2610035D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006518.1 MGP_C57BL6NJ_G0005429.1 mouse_genomes_project 11 120341102 120511817 - 2610035D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006519.1 MGP_C57BL6NJ_G0005429.1 mouse_genomes_project 11 120341102 120481235 - 2610035D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006520.1 MGP_C57BL6NJ_G0005429.1 mouse_genomes_project 11 120341724 120481235 - 2610035D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0012934.1 MGP_C57BL6NJ_G0010979.1 mouse_genomes_project 11 62235938 62236699 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012900.1 MGP_C57BL6NJ_G0010945.1 mouse_genomes_project 11 50377131 50377510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006514.1 MGP_C57BL6NJ_G0005427.1 mouse_genomes_project 11 120058502 120068504 - Gm11681 lincRNA lincRNA MGP_C57BL6NJ_T0029810.1 MGP_C57BL6NJ_G0018793.1 mouse_genomes_project 11 61262214 61293866 + MGP_C57BL6NJ_P0029810 Nlrp3 protein_coding protein_coding MGP_C57BL6NJ_T0029811.1 MGP_C57BL6NJ_G0018793.1 mouse_genomes_project 11 61263332 61293867 + MGP_C57BL6NJ_P0029811 Nlrp3 protein_coding protein_coding MGP_C57BL6NJ_T0029812.1 MGP_C57BL6NJ_G0018793.1 mouse_genomes_project 11 61263402 61270733 + MGP_C57BL6NJ_P0029812 Nlrp3 protein_coding protein_coding MGP_C57BL6NJ_T0031021.1 MGP_C57BL6NJ_G0019057.1 mouse_genomes_project 11 76413733 76418550 - MGP_C57BL6NJ_P0031021 Olfr380 protein_coding protein_coding MGP_C57BL6NJ_T0031022.1 MGP_C57BL6NJ_G0019057.1 mouse_genomes_project 11 76413733 76421798 - MGP_C57BL6NJ_P0031022 Olfr380 protein_coding protein_coding MGP_C57BL6NJ_T0011573.1 MGP_C57BL6NJ_G0009658.1 mouse_genomes_project 11 106755956 106756244 - Gm24358 misc_RNA misc_RNA MGP_C57BL6NJ_T0013035.1 MGP_C57BL6NJ_G0011080.1 mouse_genomes_project 11 103788887 103789629 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033495.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112902707 112907328 - MGP_C57BL6NJ_P0033495 Smarcd2 protein_coding protein_coding MGP_C57BL6NJ_T0033496.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112902707 112912536 - MGP_C57BL6NJ_P0033496 Smarcd2 protein_coding protein_coding MGP_C57BL6NJ_T0033497.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112903242 112905191 - Smarcd2 protein_coding retained_intron MGP_C57BL6NJ_T0033498.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112903327 112904465 - Smarcd2 protein_coding retained_intron MGP_C57BL6NJ_T0033499.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112903547 112905275 - MGP_C57BL6NJ_P0033499 Smarcd2 protein_coding protein_coding MGP_C57BL6NJ_T0033500.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112904261 112905600 - Smarcd2 protein_coding retained_intron MGP_C57BL6NJ_T0033501.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112904840 112912529 - Smarcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033502.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112905267 112907012 - Smarcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0033503.1 MGP_C57BL6NJ_G0019693.1 mouse_genomes_project 11 112906419 112907057 - Smarcd2 protein_coding retained_intron MGP_C57BL6NJ_T0031050.1 MGP_C57BL6NJ_G0019075.1 mouse_genomes_project 11 77076176 77095007 + MGP_C57BL6NJ_P0031050 protein_coding protein_coding MGP_C57BL6NJ_T0031051.1 MGP_C57BL6NJ_G0019075.1 mouse_genomes_project 11 77076176 77090814 + MGP_C57BL6NJ_P0031051 protein_coding protein_coding MGP_C57BL6NJ_T0031052.1 MGP_C57BL6NJ_G0019075.1 mouse_genomes_project 11 77076386 77090035 + protein_coding processed_transcript MGP_C57BL6NJ_T0031053.1 MGP_C57BL6NJ_G0019075.1 mouse_genomes_project 11 77076406 77089763 + MGP_C57BL6NJ_P0031053 protein_coding protein_coding MGP_C57BL6NJ_T0017645.1 MGP_C57BL6NJ_G0015559.1 mouse_genomes_project 11 41635946 41916834 + processed_transcript processed_transcript MGP_C57BL6NJ_T0017646.1 MGP_C57BL6NJ_G0015559.1 mouse_genomes_project 11 41825504 41922681 + processed_transcript processed_transcript MGP_C57BL6NJ_T0017647.1 MGP_C57BL6NJ_G0015559.1 mouse_genomes_project 11 41911038 41920675 + processed_transcript processed_transcript MGP_C57BL6NJ_T0006530.1 MGP_C57BL6NJ_G0005438.1 mouse_genomes_project 11 124940000 124945711 - Gm11728 lincRNA lincRNA MGP_C57BL6NJ_T0006531.1 MGP_C57BL6NJ_G0005438.1 mouse_genomes_project 11 124943246 124945706 - Gm11728 lincRNA lincRNA MGP_C57BL6NJ_T0028857.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 29958936 30190482 + MGP_C57BL6NJ_P0028857 Asb3 protein_coding protein_coding MGP_C57BL6NJ_T0028862.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 30032822 30191853 + MGP_C57BL6NJ_P0028862 Asb3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028863.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 30032835 30175253 + MGP_C57BL6NJ_P0028863 Asb3 protein_coding protein_coding MGP_C57BL6NJ_T0028864.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 30032864 30114318 + Asb3 protein_coding retained_intron MGP_C57BL6NJ_T0028867.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 30076394 30190391 + MGP_C57BL6NJ_P0028867 Asb3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028868.1 MGP_C57BL6NJ_G0018511.1 mouse_genomes_project 11 30145718 30148751 + Asb3 protein_coding retained_intron MGP_C57BL6NJ_T0034086.1 MGP_C57BL6NJ_G0019815.1 mouse_genomes_project 11 124078722 124081722 + MGP_C57BL6NJ_P0034086 Galr2 protein_coding protein_coding MGP_C57BL6NJ_T0034087.1 MGP_C57BL6NJ_G0019815.1 mouse_genomes_project 11 124079269 124081445 + Galr2 protein_coding processed_transcript MGP_C57BL6NJ_T0003363.1 MGP_C57BL6NJ_G0003103.1 mouse_genomes_project 11 69951208 69957031 - Gm12301 antisense antisense MGP_C57BL6NJ_T0034528.1 MGP_C57BL6NJ_G0019901.1 mouse_genomes_project 11 128817846 128833420 - MGP_C57BL6NJ_P0034528 P4hb protein_coding protein_coding MGP_C57BL6NJ_T0034529.1 MGP_C57BL6NJ_G0019901.1 mouse_genomes_project 11 128817853 128818785 - P4hb protein_coding processed_transcript MGP_C57BL6NJ_T0034530.1 MGP_C57BL6NJ_G0019901.1 mouse_genomes_project 11 128818493 128833008 - MGP_C57BL6NJ_P0034530 P4hb protein_coding protein_coding MGP_C57BL6NJ_T0031874.1 MGP_C57BL6NJ_G0019275.1 mouse_genomes_project 11 90015592 90024990 + MGP_C57BL6NJ_P0031874 Tbx2 protein_coding protein_coding MGP_C57BL6NJ_T0033205.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108695288 108701804 + MGP_C57BL6NJ_P0033205 Grn protein_coding protein_coding MGP_C57BL6NJ_T0033206.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108695491 108699441 + MGP_C57BL6NJ_P0033206 Grn protein_coding protein_coding MGP_C57BL6NJ_T0033207.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108697779 108699252 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033208.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108698926 108699588 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033209.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108699093 108700257 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033210.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108699096 108699886 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033211.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108699712 108700939 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033212.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108700279 108701568 + MGP_C57BL6NJ_P0033212 Grn protein_coding protein_coding MGP_C57BL6NJ_T0033213.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108700300 108701059 + Grn protein_coding retained_intron MGP_C57BL6NJ_T0033214.1 MGP_C57BL6NJ_G0019626.1 mouse_genomes_project 11 108700410 108702043 + MGP_C57BL6NJ_P0033214 Grn protein_coding protein_coding MGP_C57BL6NJ_T0033803.1 MGP_C57BL6NJ_G0019762.1 mouse_genomes_project 11 122657669 122663368 - MGP_C57BL6NJ_P0033803 protein_coding protein_coding MGP_C57BL6NJ_T0003266.1 MGP_C57BL6NJ_G0003024.1 mouse_genomes_project 11 3698630 3715465 + Gm11973 antisense antisense MGP_C57BL6NJ_T0003267.1 MGP_C57BL6NJ_G0003024.1 mouse_genomes_project 11 3698670 3720923 + Gm11973 antisense antisense MGP_C57BL6NJ_T0003268.1 MGP_C57BL6NJ_G0003024.1 mouse_genomes_project 11 3698682 3720923 + Gm11973 antisense antisense MGP_C57BL6NJ_T0030435.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72152488 72164198 + MGP_C57BL6NJ_P0030435 Trp53 protein_coding protein_coding MGP_C57BL6NJ_T0030436.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72152488 72164198 + MGP_C57BL6NJ_P0030436 Trp53 protein_coding protein_coding MGP_C57BL6NJ_T0030437.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72152488 72164199 + MGP_C57BL6NJ_P0030437 Trp53 protein_coding protein_coding MGP_C57BL6NJ_T0030438.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72152531 72162647 + Trp53 protein_coding processed_transcript MGP_C57BL6NJ_T0030439.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72152534 72164199 + MGP_C57BL6NJ_P0030439 Trp53 protein_coding protein_coding MGP_C57BL6NJ_T0030440.1 MGP_C57BL6NJ_G0018929.1 mouse_genomes_project 11 72160825 72161952 + Trp53 protein_coding processed_transcript MGP_C57BL6NJ_T0032604.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104303151 104335886 + MGP_C57BL6NJ_P0032604 Gsdma2 protein_coding protein_coding MGP_C57BL6NJ_T0032605.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104303155 104305471 + Gsdma2 protein_coding processed_transcript MGP_C57BL6NJ_T0032606.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104303155 104335875 + MGP_C57BL6NJ_P0032606 Gsdma2 protein_coding protein_coding MGP_C57BL6NJ_T0032607.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104303161 104304432 + Gsdma2 protein_coding processed_transcript MGP_C57BL6NJ_T0032608.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104303167 104305043 + Gsdma2 protein_coding processed_transcript MGP_C57BL6NJ_T0032609.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104306006 104323612 + Gsdma2 protein_coding processed_transcript MGP_C57BL6NJ_T0032610.1 MGP_C57BL6NJ_G0019459.1 mouse_genomes_project 11 104323072 104326539 + Gsdma2 protein_coding processed_transcript MGP_C57BL6NJ_T0003383.1 MGP_C57BL6NJ_G0003121.1 mouse_genomes_project 11 83067613 83069926 - AU040972 antisense antisense MGP_C57BL6NJ_T0102771.1 MGP_C57BL6NJ_G0040566.1 mouse_genomes_project 11 115576542 115577504 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006419.1 MGP_C57BL6NJ_G0005359.1 mouse_genomes_project 11 66285321 66304574 + Gm12290 lincRNA lincRNA MGP_C57BL6NJ_T0030727.1 MGP_C57BL6NJ_G0018992.1 mouse_genomes_project 11 73214541 73215632 + Psmb6 protein_coding retained_intron MGP_C57BL6NJ_T0030728.1 MGP_C57BL6NJ_G0018992.1 mouse_genomes_project 11 73214560 73216857 + MGP_C57BL6NJ_P0030728 Psmb6 protein_coding protein_coding MGP_C57BL6NJ_T0030729.1 MGP_C57BL6NJ_G0018992.1 mouse_genomes_project 11 73215317 73216401 + Psmb6 protein_coding retained_intron MGP_C57BL6NJ_T0030730.1 MGP_C57BL6NJ_G0018992.1 mouse_genomes_project 11 73216279 73217066 + Psmb6 protein_coding retained_intron MGP_C57BL6NJ_T0034724.1 MGP_C57BL6NJ_G0019942.1 mouse_genomes_project 11 129882675 129891032 - MGP_C57BL6NJ_P0034724 Zfp750 protein_coding protein_coding MGP_C57BL6NJ_T0003472.1 MGP_C57BL6NJ_G0003191.1 mouse_genomes_project 11 113946140 113957198 + Gm11715 antisense antisense MGP_C57BL6NJ_T0031445.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81725243 81727530 + 2610507B11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0031446.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81725243 81756963 + MGP_C57BL6NJ_P0031446 2610507B11Rik protein_coding protein_coding MGP_C57BL6NJ_T0031447.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81725969 81727464 + 2610507B11Rik protein_coding retained_intron MGP_C57BL6NJ_T0031448.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81729630 81731678 + 2610507B11Rik protein_coding retained_intron MGP_C57BL6NJ_T0031449.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81735468 81736922 + 2610507B11Rik protein_coding retained_intron MGP_C57BL6NJ_T0031450.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81736648 81738385 + MGP_C57BL6NJ_P0031450 2610507B11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031451.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81748908 81752585 + 2610507B11Rik protein_coding retained_intron MGP_C57BL6NJ_T0031452.1 MGP_C57BL6NJ_G0019163.1 mouse_genomes_project 11 81752541 81755356 + 2610507B11Rik protein_coding retained_intron MGP_C57BL6NJ_T0034218.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125128959 125315782 + MGP_C57BL6NJ_P0034218 Sept9 protein_coding protein_coding MGP_C57BL6NJ_T0034219.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125172567 125315770 + MGP_C57BL6NJ_P0034219 Sept9 protein_coding protein_coding MGP_C57BL6NJ_T0034220.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125206793 125315777 + MGP_C57BL6NJ_P0034220 Sept9 protein_coding protein_coding MGP_C57BL6NJ_T0034221.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125258367 125305669 + MGP_C57BL6NJ_P0034221 Sept9 protein_coding protein_coding MGP_C57BL6NJ_T0034222.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125277004 125309833 + MGP_C57BL6NJ_P0034222 Sept9 protein_coding protein_coding MGP_C57BL6NJ_T0034223.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125284640 125315086 + Sept9 protein_coding retained_intron MGP_C57BL6NJ_T0034224.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125306636 125310456 + Sept9 protein_coding retained_intron MGP_C57BL6NJ_T0034225.1 MGP_C57BL6NJ_G0019838.1 mouse_genomes_project 11 125312816 125314323 + Sept9 protein_coding retained_intron MGP_C57BL6NJ_T0101040.1 MGP_C57BL6NJ_G0039086.1 mouse_genomes_project 11 62646187 62646313 + Gm24945 snoRNA snoRNA MGP_C57BL6NJ_T0033146.1 MGP_C57BL6NJ_G0019618.1 mouse_genomes_project 11 108482626 108501082 + MGP_C57BL6NJ_P0033146 BC030867 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033147.1 MGP_C57BL6NJ_G0019618.1 mouse_genomes_project 11 108482626 108501082 + MGP_C57BL6NJ_P0033147 BC030867 protein_coding protein_coding MGP_C57BL6NJ_T0033148.1 MGP_C57BL6NJ_G0019618.1 mouse_genomes_project 11 108489391 108494356 + BC030867 protein_coding processed_transcript MGP_C57BL6NJ_T0033149.1 MGP_C57BL6NJ_G0019618.1 mouse_genomes_project 11 108489395 108494354 + BC030867 protein_coding processed_transcript MGP_C57BL6NJ_T0033150.1 MGP_C57BL6NJ_G0019618.1 mouse_genomes_project 11 108495703 108501082 + BC030867 protein_coding processed_transcript MGP_C57BL6NJ_T0033714.1 MGP_C57BL6NJ_G0019740.1 mouse_genomes_project 11 120048048 120053585 + MGP_C57BL6NJ_P0033714 Sox9 protein_coding protein_coding MGP_C57BL6NJ_T0009850.1 MGP_C57BL6NJ_G0007935.1 mouse_genomes_project 11 22115686 22115777 - miRNA miRNA MGP_C57BL6NJ_T0029488.1 MGP_C57BL6NJ_G0018689.1 mouse_genomes_project 11 54458835 54459753 + MGP_C57BL6NJ_P0029488 Gm9945 protein_coding protein_coding MGP_C57BL6NJ_T0013067.1 MGP_C57BL6NJ_G0011112.1 mouse_genomes_project 11 115611638 115612062 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009872.1 MGP_C57BL6NJ_G0007957.1 mouse_genomes_project 11 52958891 52958982 + Mir3061 miRNA miRNA MGP_C57BL6NJ_T0032770.1 MGP_C57BL6NJ_G0019539.1 mouse_genomes_project 11 106190532 106193629 - Krt42 protein_coding retained_intron MGP_C57BL6NJ_T0032771.1 MGP_C57BL6NJ_G0019539.1 mouse_genomes_project 11 106190537 106197532 - MGP_C57BL6NJ_P0032771 Krt42 protein_coding protein_coding MGP_C57BL6NJ_T0009893.1 MGP_C57BL6NJ_G0007978.1 mouse_genomes_project 11 72597022 72597145 + Gm44349 miRNA miRNA MGP_C57BL6NJ_T0034190.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741021 124744250 - MGP_C57BL6NJ_P0034190 Srsf2 protein_coding protein_coding MGP_C57BL6NJ_T0034191.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741024 124743375 - Srsf2 protein_coding retained_intron MGP_C57BL6NJ_T0034192.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741026 124743242 - MGP_C57BL6NJ_P0034192 Srsf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034193.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741164 124744228 - MGP_C57BL6NJ_P0034193 Srsf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034194.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741174 124744228 - MGP_C57BL6NJ_P0034194 Srsf2 protein_coding protein_coding MGP_C57BL6NJ_T0034195.1 MGP_C57BL6NJ_G0019834.1 mouse_genomes_project 11 124741220 124742727 - Srsf2 protein_coding processed_transcript MGP_C57BL6NJ_T0032928.1 MGP_C57BL6NJ_G0019574.1 mouse_genomes_project 11 107199055 107210546 + MGP_C57BL6NJ_P0032928 Tubg2 protein_coding protein_coding MGP_C57BL6NJ_T0032929.1 MGP_C57BL6NJ_G0019574.1 mouse_genomes_project 11 107199268 107210547 + MGP_C57BL6NJ_P0032929 Tubg2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031857.1 MGP_C57BL6NJ_G0019273.1 mouse_genomes_project 11 89454863 89491095 + MGP_C57BL6NJ_P0031857 Ppm1d protein_coding protein_coding MGP_C57BL6NJ_T0031858.1 MGP_C57BL6NJ_G0019273.1 mouse_genomes_project 11 89455783 89481249 + MGP_C57BL6NJ_P0031858 Ppm1d protein_coding protein_coding MGP_C57BL6NJ_T0000970.1 MGP_C57BL6NJ_G0000880.1 mouse_genomes_project 11 13942886 13943522 + TEC TEC MGP_C57BL6NJ_T0006334.1 MGP_C57BL6NJ_G0005285.1 mouse_genomes_project 11 11841176 11953988 - lincRNA lincRNA MGP_C57BL6NJ_T0101053.1 MGP_C57BL6NJ_G0039099.1 mouse_genomes_project 11 77996687 77996780 + Snord91a snoRNA snoRNA MGP_C57BL6NJ_T0032704.1 MGP_C57BL6NJ_G0019485.1 mouse_genomes_project 11 105220730 105227324 - MGP_C57BL6NJ_P0032704 Krt12 protein_coding protein_coding MGP_C57BL6NJ_T0013073.1 MGP_C57BL6NJ_G0011118.1 mouse_genomes_project 11 119252896 119253675 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009933.1 MGP_C57BL6NJ_G0008018.1 mouse_genomes_project 11 102622104 102622160 - Mir7235 miRNA miRNA MGP_C57BL6NJ_T0032526.1 MGP_C57BL6NJ_G0019439.1 mouse_genomes_project 11 103498643 103566693 - MGP_C57BL6NJ_P0032526 Plxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0032527.1 MGP_C57BL6NJ_G0019439.1 mouse_genomes_project 11 103499061 103566648 - MGP_C57BL6NJ_P0032527 Plxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0032528.1 MGP_C57BL6NJ_G0019439.1 mouse_genomes_project 11 103513197 103566682 - Plxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0032529.1 MGP_C57BL6NJ_G0019439.1 mouse_genomes_project 11 103556748 103566679 - MGP_C57BL6NJ_P0032529 Plxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0028119.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 200135 203509 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028120.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 200428 224512 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028121.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 200463 208406 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028122.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 200542 224512 + MGP_C57BL6NJ_P0028122 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0028123.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 203309 210862 + MGP_C57BL6NJ_P0028123 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0028124.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 203309 224512 + MGP_C57BL6NJ_P0028124 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0028125.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 203755 224512 + MGP_C57BL6NJ_P0028125 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0028126.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 203773 224512 + MGP_C57BL6NJ_P0028126 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0028127.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 204775 223571 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028128.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 205511 207985 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028129.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 206184 208212 + Patz1 protein_coding processed_transcript MGP_C57BL6NJ_T0028130.1 MGP_C57BL6NJ_G0018348.1 mouse_genomes_project 11 213716 223096 + MGP_C57BL6NJ_P0028130 Patz1 protein_coding protein_coding MGP_C57BL6NJ_T0101022.1 MGP_C57BL6NJ_G0039068.1 mouse_genomes_project 11 21766535 21766644 - Gm24398 snoRNA snoRNA MGP_C57BL6NJ_T0030362.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71611466 71623663 + MGP_C57BL6NJ_P0030362 Per1 protein_coding protein_coding MGP_C57BL6NJ_T0030363.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71616152 71627165 + MGP_C57BL6NJ_P0030363 Per1 protein_coding protein_coding MGP_C57BL6NJ_T0030364.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71617356 71618253 + MGP_C57BL6NJ_P0030364 Per1 protein_coding protein_coding MGP_C57BL6NJ_T0030365.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71617362 71627153 + MGP_C57BL6NJ_P0030365 Per1 protein_coding protein_coding MGP_C57BL6NJ_T0030366.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71617713 71623501 + MGP_C57BL6NJ_P0030366 Per1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030367.1 MGP_C57BL6NJ_G0018910.1 mouse_genomes_project 11 71617726 71627165 + MGP_C57BL6NJ_P0030367 Per1 protein_coding protein_coding MGP_C57BL6NJ_T0003473.1 MGP_C57BL6NJ_G0003192.1 mouse_genomes_project 11 114140470 114147225 + Gm11716 antisense antisense MGP_C57BL6NJ_T0031039.1 MGP_C57BL6NJ_G0019067.1 mouse_genomes_project 11 76848973 76849912 - MGP_C57BL6NJ_P0031039 Olfr393 protein_coding protein_coding MGP_C57BL6NJ_T0030238.1 MGP_C57BL6NJ_G0018885.1 mouse_genomes_project 11 70081361 70089367 + MGP_C57BL6NJ_P0030238 Rcvrn protein_coding protein_coding MGP_C57BL6NJ_T0029003.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35475584 36779258 - MGP_C57BL6NJ_P0029003 Tenm2 protein_coding protein_coding MGP_C57BL6NJ_T0029004.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35476590 36462706 - MGP_C57BL6NJ_P0029004 Tenm2 protein_coding protein_coding MGP_C57BL6NJ_T0029005.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35476963 36462706 - MGP_C57BL6NJ_P0029005 Tenm2 protein_coding protein_coding MGP_C57BL6NJ_T0029006.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35613393 36462706 - Tenm2 protein_coding processed_transcript MGP_C57BL6NJ_T0029007.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35614665 36174079 - Tenm2 protein_coding processed_transcript MGP_C57BL6NJ_T0029008.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35639832 35984049 - Tenm2 protein_coding processed_transcript MGP_C57BL6NJ_T0029009.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 35871799 35920156 - Tenm2 protein_coding processed_transcript MGP_C57BL6NJ_T0029010.1 MGP_C57BL6NJ_G0018555.1 mouse_genomes_project 11 36462744 36779340 - Tenm2 protein_coding processed_transcript MGP_C57BL6NJ_T0009902.1 MGP_C57BL6NJ_G0007987.1 mouse_genomes_project 11 75510619 75510692 + Gm25678 miRNA miRNA MGP_C57BL6NJ_T0012789.1 MGP_C57BL6NJ_G0010834.1 mouse_genomes_project 11 13365480 13373675 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003402.1 MGP_C57BL6NJ_G0003135.1 mouse_genomes_project 11 91371583 91376917 - Gm11491 antisense antisense MGP_C57BL6NJ_T0003403.1 MGP_C57BL6NJ_G0003135.1 mouse_genomes_project 11 91371801 91376970 - Gm11491 antisense antisense MGP_C57BL6NJ_T0031655.1 MGP_C57BL6NJ_G0019221.1 mouse_genomes_project 11 86558525 86560116 + MGP_C57BL6NJ_P0031655 Zfp830 protein_coding protein_coding MGP_C57BL6NJ_T0012901.1 MGP_C57BL6NJ_G0010946.1 mouse_genomes_project 11 50989970 50990232 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003344.1 MGP_C57BL6NJ_G0003089.1 mouse_genomes_project 11 64588810 64590717 - Gm12280 antisense antisense MGP_C57BL6NJ_T0006382.1 MGP_C57BL6NJ_G0005326.1 mouse_genomes_project 11 38139236 38165659 - Gm12130 lincRNA lincRNA MGP_C57BL6NJ_T0030097.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64536195 64560098 - MGP_C57BL6NJ_P0030097 Cenpv protein_coding protein_coding MGP_C57BL6NJ_T0030098.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64536198 64539155 - Cenpv protein_coding retained_intron MGP_C57BL6NJ_T0030099.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64536392 64559322 - Cenpv protein_coding processed_transcript MGP_C57BL6NJ_T0030100.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64538751 64559466 - Cenpv protein_coding processed_transcript MGP_C57BL6NJ_T0030101.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64554744 64559840 - MGP_C57BL6NJ_P0030101 Cenpv protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030102.1 MGP_C57BL6NJ_G0018847.1 mouse_genomes_project 11 64554975 64559840 - Cenpv protein_coding processed_transcript MGP_C57BL6NJ_T0033390.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110801384 110915575 - MGP_C57BL6NJ_P0033390 Kansl1 protein_coding protein_coding MGP_C57BL6NJ_T0033391.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110801656 110915575 - MGP_C57BL6NJ_P0033391 Kansl1 protein_coding protein_coding MGP_C57BL6NJ_T0033392.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110801656 110944900 - MGP_C57BL6NJ_P0033392 Kansl1 protein_coding protein_coding MGP_C57BL6NJ_T0033393.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110801700 110914982 - MGP_C57BL6NJ_P0033393 Kansl1 protein_coding protein_coding MGP_C57BL6NJ_T0033394.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110803076 110811805 - Kansl1 protein_coding processed_transcript MGP_C57BL6NJ_T0033395.1 MGP_C57BL6NJ_G0019667.1 mouse_genomes_project 11 110898179 110944030 - MGP_C57BL6NJ_P0033395 Kansl1 protein_coding protein_coding MGP_C57BL6NJ_T0017641.1 MGP_C57BL6NJ_G0015555.1 mouse_genomes_project 11 28134715 28137365 - A630052C17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0029049.1 MGP_C57BL6NJ_G0018565.1 mouse_genomes_project 11 43187226 43196829 + Atp10b protein_coding processed_transcript MGP_C57BL6NJ_T0029050.1 MGP_C57BL6NJ_G0018565.1 mouse_genomes_project 11 43188948 43302378 + MGP_C57BL6NJ_P0029050 Atp10b protein_coding protein_coding MGP_C57BL6NJ_T0029051.1 MGP_C57BL6NJ_G0018565.1 mouse_genomes_project 11 43193208 43238478 + Atp10b protein_coding processed_transcript MGP_C57BL6NJ_T0028489.1 MGP_C57BL6NJ_G0018429.1 mouse_genomes_project 11 6209550 6359776 - MGP_C57BL6NJ_P0028489 Pkd1l1 protein_coding protein_coding MGP_C57BL6NJ_T0028490.1 MGP_C57BL6NJ_G0018429.1 mouse_genomes_project 11 6209617 6335789 - MGP_C57BL6NJ_P0028490 Pkd1l1 protein_coding protein_coding MGP_C57BL6NJ_T0028491.1 MGP_C57BL6NJ_G0018429.1 mouse_genomes_project 11 6226586 6247087 - Pkd1l1 protein_coding processed_transcript MGP_C57BL6NJ_T0031205.1 MGP_C57BL6NJ_G0019113.1 mouse_genomes_project 11 78925260 78961406 + MGP_C57BL6NJ_P0031205 Ywhae protein_coding protein_coding MGP_C57BL6NJ_T0031206.1 MGP_C57BL6NJ_G0019113.1 mouse_genomes_project 11 78925304 78960184 + MGP_C57BL6NJ_P0031206 Ywhae protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031207.1 MGP_C57BL6NJ_G0019113.1 mouse_genomes_project 11 78925352 78950584 + Ywhae protein_coding retained_intron MGP_C57BL6NJ_T0031208.1 MGP_C57BL6NJ_G0019113.1 mouse_genomes_project 11 78925539 78950340 + MGP_C57BL6NJ_P0031208 Ywhae protein_coding protein_coding MGP_C57BL6NJ_T0031209.1 MGP_C57BL6NJ_G0019113.1 mouse_genomes_project 11 78944895 78952783 + Ywhae protein_coding retained_intron MGP_C57BL6NJ_T0009869.1 MGP_C57BL6NJ_G0007954.1 mouse_genomes_project 11 50863666 50863728 + Mir6919 miRNA miRNA MGP_C57BL6NJ_T0032678.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104812098 104826250 + MGP_C57BL6NJ_P0032678 Igfbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032679.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104812614 104822744 + MGP_C57BL6NJ_P0032679 Igfbp4 protein_coding protein_coding MGP_C57BL6NJ_T0032680.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104813040 104819403 + Igfbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0032681.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104814639 104822963 + Igfbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0032682.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104815808 104822858 + Igfbp4 protein_coding processed_transcript MGP_C57BL6NJ_T0032683.1 MGP_C57BL6NJ_G0019474.1 mouse_genomes_project 11 104818353 104822855 + MGP_C57BL6NJ_P0032683 Igfbp4 protein_coding protein_coding MGP_C57BL6NJ_T0029073.1 MGP_C57BL6NJ_G0018570.1 mouse_genomes_project 11 43652140 43654180 + MGP_C57BL6NJ_P0029073 4933415A04Rik protein_coding protein_coding MGP_C57BL6NJ_T0030512.1 MGP_C57BL6NJ_G0018945.1 mouse_genomes_project 11 72385836 72398031 - MGP_C57BL6NJ_P0030512 Chrnb1 protein_coding protein_coding MGP_C57BL6NJ_T0030513.1 MGP_C57BL6NJ_G0018945.1 mouse_genomes_project 11 72394791 72396358 - Chrnb1 protein_coding retained_intron MGP_C57BL6NJ_T0030514.1 MGP_C57BL6NJ_G0018945.1 mouse_genomes_project 11 72394866 72395908 - Chrnb1 protein_coding retained_intron MGP_C57BL6NJ_T0030515.1 MGP_C57BL6NJ_G0018945.1 mouse_genomes_project 11 72395607 72397993 - Chrnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0003520.1 MGP_C57BL6NJ_G0003227.1 mouse_genomes_project 11 128957160 128977385 - Gm17178 antisense antisense MGP_C57BL6NJ_T0030867.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73764798 73770366 + MGP_C57BL6NJ_P0030867 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0030868.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73764798 73772559 + MGP_C57BL6NJ_P0030868 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0030869.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73764798 73771254 + MGP_C57BL6NJ_P0030869 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0030870.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73765046 73770355 + MGP_C57BL6NJ_P0030870 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0030871.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73765049 73770346 + MGP_C57BL6NJ_P0030871 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0030872.1 MGP_C57BL6NJ_G0019014.1 mouse_genomes_project 11 73765078 73770383 + MGP_C57BL6NJ_P0030872 Mis12 protein_coding protein_coding MGP_C57BL6NJ_T0003355.1 MGP_C57BL6NJ_G0003098.1 mouse_genomes_project 11 66129669 66132267 + Gm12289 antisense antisense MGP_C57BL6NJ_T0032059.1 MGP_C57BL6NJ_G0019319.1 mouse_genomes_project 11 93435554 93470101 - MGP_C57BL6NJ_P0032059 Scpep1 protein_coding protein_coding MGP_C57BL6NJ_T0032662.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104660022 104724049 + MGP_C57BL6NJ_P0032662 Rara protein_coding protein_coding MGP_C57BL6NJ_T0032663.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104669905 104724049 + MGP_C57BL6NJ_P0032663 Rara protein_coding protein_coding MGP_C57BL6NJ_T0032664.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104669925 104724829 + MGP_C57BL6NJ_P0032664 Rara protein_coding protein_coding MGP_C57BL6NJ_T0032665.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104670535 104682953 + Rara protein_coding processed_transcript MGP_C57BL6NJ_T0032666.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104672259 104724829 + MGP_C57BL6NJ_P0032666 Rara protein_coding protein_coding MGP_C57BL6NJ_T0032667.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104672260 104683082 + Rara protein_coding processed_transcript MGP_C57BL6NJ_T0032668.1 MGP_C57BL6NJ_G0019471.1 mouse_genomes_project 11 104708091 104724829 + MGP_C57BL6NJ_P0032668 Rara protein_coding protein_coding MGP_C57BL6NJ_T0032727.1 MGP_C57BL6NJ_G0019505.1 mouse_genomes_project 11 105565724 105565802 - MGP_C57BL6NJ_P0032727 Gm14180 protein_coding protein_coding MGP_C57BL6NJ_T0033116.1 MGP_C57BL6NJ_G0019615.1 mouse_genomes_project 11 108387231 108411428 - MGP_C57BL6NJ_P0033116 Lsm12 protein_coding protein_coding MGP_C57BL6NJ_T0033117.1 MGP_C57BL6NJ_G0019615.1 mouse_genomes_project 11 108387231 108411495 - MGP_C57BL6NJ_P0033117 Lsm12 protein_coding protein_coding MGP_C57BL6NJ_T0033118.1 MGP_C57BL6NJ_G0019615.1 mouse_genomes_project 11 108388701 108407552 - Lsm12 protein_coding processed_transcript MGP_C57BL6NJ_T0033874.1 MGP_C57BL6NJ_G0019779.1 mouse_genomes_project 11 123083701 123094848 + MGP_C57BL6NJ_P0033874 Kctd2 protein_coding protein_coding MGP_C57BL6NJ_T0033875.1 MGP_C57BL6NJ_G0019779.1 mouse_genomes_project 11 123083723 123094848 + MGP_C57BL6NJ_P0033875 Kctd2 protein_coding protein_coding MGP_C57BL6NJ_T0033876.1 MGP_C57BL6NJ_G0019779.1 mouse_genomes_project 11 123083755 123093615 + MGP_C57BL6NJ_P0033876 Kctd2 protein_coding protein_coding MGP_C57BL6NJ_T0033877.1 MGP_C57BL6NJ_G0019779.1 mouse_genomes_project 11 123083885 123086003 + Kctd2 protein_coding retained_intron MGP_C57BL6NJ_T0033878.1 MGP_C57BL6NJ_G0019779.1 mouse_genomes_project 11 123092926 123093775 + Kctd2 protein_coding processed_transcript MGP_C57BL6NJ_T0032708.1 MGP_C57BL6NJ_G0019488.1 mouse_genomes_project 11 105342491 105348069 - MGP_C57BL6NJ_P0032708 Krt40 protein_coding protein_coding MGP_C57BL6NJ_T0032709.1 MGP_C57BL6NJ_G0019488.1 mouse_genomes_project 11 105342491 105348069 - MGP_C57BL6NJ_P0032709 Krt40 protein_coding protein_coding MGP_C57BL6NJ_T0031547.1 MGP_C57BL6NJ_G0019189.1 mouse_genomes_project 11 83086947 83090050 - MGP_C57BL6NJ_P0031547 Omg protein_coding protein_coding MGP_C57BL6NJ_T0034212.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125032283 125069765 + Sec14l1 protein_coding retained_intron MGP_C57BL6NJ_T0034213.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125032287 125082566 + MGP_C57BL6NJ_P0034213 Sec14l1 protein_coding protein_coding MGP_C57BL6NJ_T0034214.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125032353 125080860 + MGP_C57BL6NJ_P0034214 Sec14l1 protein_coding protein_coding MGP_C57BL6NJ_T0034215.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125032353 125082569 + MGP_C57BL6NJ_P0034215 Sec14l1 protein_coding protein_coding MGP_C57BL6NJ_T0034216.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125032367 125045860 + Sec14l1 protein_coding processed_transcript MGP_C57BL6NJ_T0034217.1 MGP_C57BL6NJ_G0019837.1 mouse_genomes_project 11 125075737 125077144 + Sec14l1 protein_coding retained_intron MGP_C57BL6NJ_T0028131.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 250117 264346 + MGP_C57BL6NJ_P0028131 Pik3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0028132.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 250444 252070 + Pik3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0028133.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 250503 263058 + MGP_C57BL6NJ_P0028133 Pik3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0028134.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 250509 253929 + Pik3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0028135.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 250524 253931 + MGP_C57BL6NJ_P0028135 Pik3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0028136.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 252038 253646 + Pik3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0028137.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 252075 263049 + MGP_C57BL6NJ_P0028137 Pik3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0028138.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 252417 263067 + MGP_C57BL6NJ_P0028138 Pik3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0028139.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 252938 253927 + Pik3ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0028140.1 MGP_C57BL6NJ_G0018349.1 mouse_genomes_project 11 254345 263380 + Pik3ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0034718.1 MGP_C57BL6NJ_G0019940.1 mouse_genomes_project 11 129798294 129813845 + MGP_C57BL6NJ_P0034718 Fn3k protein_coding protein_coding MGP_C57BL6NJ_T0034719.1 MGP_C57BL6NJ_G0019940.1 mouse_genomes_project 11 129798348 129806345 + MGP_C57BL6NJ_P0034719 Fn3k protein_coding protein_coding MGP_C57BL6NJ_T0034720.1 MGP_C57BL6NJ_G0019940.1 mouse_genomes_project 11 129798349 129806869 + MGP_C57BL6NJ_P0034720 Fn3k protein_coding protein_coding MGP_C57BL6NJ_T0030521.1 MGP_C57BL6NJ_G0018950.1 mouse_genomes_project 11 72427041 72439893 - MGP_C57BL6NJ_P0030521 Nlgn2 protein_coding protein_coding MGP_C57BL6NJ_T0030522.1 MGP_C57BL6NJ_G0018950.1 mouse_genomes_project 11 72427041 72444529 - MGP_C57BL6NJ_P0030522 Nlgn2 protein_coding protein_coding MGP_C57BL6NJ_T0030523.1 MGP_C57BL6NJ_G0018950.1 mouse_genomes_project 11 72432782 72439303 - MGP_C57BL6NJ_P0030523 Nlgn2 protein_coding protein_coding MGP_C57BL6NJ_T0030524.1 MGP_C57BL6NJ_G0018950.1 mouse_genomes_project 11 72433087 72433603 - Nlgn2 protein_coding retained_intron MGP_C57BL6NJ_T0012954.1 MGP_C57BL6NJ_G0010999.1 mouse_genomes_project 11 71590063 71590234 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028944.1 MGP_C57BL6NJ_G0018535.1 mouse_genomes_project 11 32087642 32093944 - MGP_C57BL6NJ_P0028944 Smim23 protein_coding protein_coding MGP_C57BL6NJ_T0028945.1 MGP_C57BL6NJ_G0018535.1 mouse_genomes_project 11 32089486 32093987 - MGP_C57BL6NJ_P0028945 Smim23 protein_coding protein_coding MGP_C57BL6NJ_T0003338.1 MGP_C57BL6NJ_G0003083.1 mouse_genomes_project 11 62783027 62793966 - Map2k3os antisense antisense MGP_C57BL6NJ_T0033215.1 MGP_C57BL6NJ_G0019627.1 mouse_genomes_project 11 108701975 108712531 - MGP_C57BL6NJ_P0033215 Fam171a2 protein_coding protein_coding MGP_C57BL6NJ_T0033216.1 MGP_C57BL6NJ_G0019627.1 mouse_genomes_project 11 108703742 108704772 - Fam171a2 protein_coding processed_transcript MGP_C57BL6NJ_T0033217.1 MGP_C57BL6NJ_G0019627.1 mouse_genomes_project 11 108705227 108712443 - Fam171a2 protein_coding processed_transcript MGP_C57BL6NJ_T0003425.1 MGP_C57BL6NJ_G0003152.1 mouse_genomes_project 11 101737088 101748878 - Hoxb3os antisense antisense MGP_C57BL6NJ_T0003426.1 MGP_C57BL6NJ_G0003152.1 mouse_genomes_project 11 101739525 101741968 - Hoxb3os antisense antisense MGP_C57BL6NJ_T0029290.1 MGP_C57BL6NJ_G0018634.1 mouse_genomes_project 11 50867890 50869893 - MGP_C57BL6NJ_P0029290 protein_coding protein_coding MGP_C57BL6NJ_T0029291.1 MGP_C57BL6NJ_G0018634.1 mouse_genomes_project 11 50867893 50869954 - MGP_C57BL6NJ_P0029291 protein_coding protein_coding MGP_C57BL6NJ_T0029292.1 MGP_C57BL6NJ_G0018634.1 mouse_genomes_project 11 50867893 50870038 - MGP_C57BL6NJ_P0029292 protein_coding protein_coding MGP_C57BL6NJ_T0034042.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123874526 123876894 - Trim47 protein_coding processed_transcript MGP_C57BL6NJ_T0034043.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123874526 123879014 - MGP_C57BL6NJ_P0034043 Trim47 protein_coding protein_coding MGP_C57BL6NJ_T0034044.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123874526 123879023 - MGP_C57BL6NJ_P0034044 Trim47 protein_coding protein_coding MGP_C57BL6NJ_T0034045.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123874983 123875858 - Trim47 protein_coding processed_transcript MGP_C57BL6NJ_T0034046.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123875113 123876515 - Trim47 protein_coding processed_transcript MGP_C57BL6NJ_T0034047.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123875166 123876810 - Trim47 protein_coding processed_transcript MGP_C57BL6NJ_T0034048.1 MGP_C57BL6NJ_G0019807.1 mouse_genomes_project 11 123876585 123903763 - Trim47 protein_coding processed_transcript MGP_C57BL6NJ_T0031164.1 MGP_C57BL6NJ_G0019106.1 mouse_genomes_project 11 78675357 78678432 + MGP_C57BL6NJ_P0031164 Rilp protein_coding protein_coding MGP_C57BL6NJ_T0031165.1 MGP_C57BL6NJ_G0019106.1 mouse_genomes_project 11 78675730 78678427 + Rilp protein_coding retained_intron MGP_C57BL6NJ_T0030911.1 MGP_C57BL6NJ_G0019025.1 mouse_genomes_project 11 75063971 75088696 - MGP_C57BL6NJ_P0030911 Slc13a5 protein_coding protein_coding MGP_C57BL6NJ_T0030912.1 MGP_C57BL6NJ_G0019025.1 mouse_genomes_project 11 75082095 75088696 - MGP_C57BL6NJ_P0030912 Slc13a5 protein_coding protein_coding MGP_C57BL6NJ_T0030913.1 MGP_C57BL6NJ_G0019025.1 mouse_genomes_project 11 75083400 75089316 - MGP_C57BL6NJ_P0030913 Slc13a5 protein_coding protein_coding MGP_C57BL6NJ_T0028955.1 MGP_C57BL6NJ_G0018540.1 mouse_genomes_project 11 32580602 32581582 - Gm12117 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0028956.1 MGP_C57BL6NJ_G0018540.1 mouse_genomes_project 11 32580723 32581179 - MGP_C57BL6NJ_P0028956 Gm12117 protein_coding protein_coding MGP_C57BL6NJ_T0032032.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92510826 92512877 + Cuedc1 protein_coding processed_transcript MGP_C57BL6NJ_T0032033.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92511914 92635310 + MGP_C57BL6NJ_P0032033 Cuedc1 protein_coding protein_coding MGP_C57BL6NJ_T0032034.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92512058 92624406 + Cuedc1 protein_coding retained_intron MGP_C57BL6NJ_T0032035.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92589979 92635310 + MGP_C57BL6NJ_P0032035 Cuedc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032036.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92609118 92635306 + MGP_C57BL6NJ_P0032036 Cuedc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032037.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92621343 92622321 + Cuedc1 protein_coding retained_intron MGP_C57BL6NJ_T0032038.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92624934 92627758 + Cuedc1 protein_coding processed_transcript MGP_C57BL6NJ_T0032039.1 MGP_C57BL6NJ_G0019314.1 mouse_genomes_project 11 92626746 92634174 + Cuedc1 protein_coding retained_intron MGP_C57BL6NJ_T0031946.1 MGP_C57BL6NJ_G0019295.1 mouse_genomes_project 11 91653511 91689860 - MGP_C57BL6NJ_P0031946 Rad51c protein_coding protein_coding MGP_C57BL6NJ_T0031947.1 MGP_C57BL6NJ_G0019295.1 mouse_genomes_project 11 91655455 91689843 - MGP_C57BL6NJ_P0031947 Rad51c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031948.1 MGP_C57BL6NJ_G0019295.1 mouse_genomes_project 11 91655961 91690291 - MGP_C57BL6NJ_P0031948 Rad51c protein_coding protein_coding MGP_C57BL6NJ_T0031949.1 MGP_C57BL6NJ_G0019295.1 mouse_genomes_project 11 91656248 91689760 - MGP_C57BL6NJ_P0031949 Rad51c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033044.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107738561 107749699 + MGP_C57BL6NJ_P0033044 Tmem106a protein_coding protein_coding MGP_C57BL6NJ_T0033045.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107738561 107749699 + MGP_C57BL6NJ_P0033045 Tmem106a protein_coding protein_coding MGP_C57BL6NJ_T0033046.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107738563 107747345 + Tmem106a protein_coding processed_transcript MGP_C57BL6NJ_T0033047.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107738576 107746851 + MGP_C57BL6NJ_P0033047 Tmem106a protein_coding protein_coding MGP_C57BL6NJ_T0033048.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107738619 107746806 + MGP_C57BL6NJ_P0033048 Tmem106a protein_coding protein_coding MGP_C57BL6NJ_T0033049.1 MGP_C57BL6NJ_G0019599.1 mouse_genomes_project 11 107743671 107748677 + Tmem106a protein_coding processed_transcript MGP_C57BL6NJ_T0012778.1 MGP_C57BL6NJ_G0010823.1 mouse_genomes_project 11 7900059 7900372 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032765.1 MGP_C57BL6NJ_G0019535.1 mouse_genomes_project 11 106104763 106112645 - MGP_C57BL6NJ_P0032765 Krt9 protein_coding protein_coding MGP_C57BL6NJ_T0030274.1 MGP_C57BL6NJ_G0018894.1 mouse_genomes_project 11 71007165 71009225 + MGP_C57BL6NJ_P0030274 Mfsd6l protein_coding protein_coding MGP_C57BL6NJ_T0033314.1 MGP_C57BL6NJ_G0019647.1 mouse_genomes_project 11 109465782 109471517 + MGP_C57BL6NJ_P0033314 Hexim1 protein_coding protein_coding MGP_C57BL6NJ_T0003487.1 MGP_C57BL6NJ_G0003203.1 mouse_genomes_project 11 116954136 116955956 + Gm11697 antisense antisense MGP_C57BL6NJ_T0034343.1 MGP_C57BL6NJ_G0019867.1 mouse_genomes_project 11 127265238 127355115 - MGP_C57BL6NJ_P0034343 Tbc1d16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034344.1 MGP_C57BL6NJ_G0019867.1 mouse_genomes_project 11 127265246 127355190 - MGP_C57BL6NJ_P0034344 Tbc1d16 protein_coding protein_coding MGP_C57BL6NJ_T0034345.1 MGP_C57BL6NJ_G0019867.1 mouse_genomes_project 11 127332478 127346727 - MGP_C57BL6NJ_P0034345 Tbc1d16 protein_coding protein_coding MGP_C57BL6NJ_T0033781.1 MGP_C57BL6NJ_G0019754.1 mouse_genomes_project 11 122303816 122311638 + MGP_C57BL6NJ_P0033781 Gpr142 protein_coding protein_coding MGP_C57BL6NJ_T0033782.1 MGP_C57BL6NJ_G0019754.1 mouse_genomes_project 11 122303816 122311638 + MGP_C57BL6NJ_P0033782 Gpr142 protein_coding protein_coding MGP_C57BL6NJ_T0029814.1 MGP_C57BL6NJ_G0018795.1 mouse_genomes_project 11 61317314 61318425 - MGP_C57BL6NJ_P0029814 Olfr223 protein_coding protein_coding MGP_C57BL6NJ_T0029622.1 MGP_C57BL6NJ_G0018718.1 mouse_genomes_project 11 56292884 56323317 - MGP_C57BL6NJ_P0029622 Slc36a3 protein_coding protein_coding MGP_C57BL6NJ_T0029623.1 MGP_C57BL6NJ_G0018718.1 mouse_genomes_project 11 56292894 56323295 - MGP_C57BL6NJ_P0029623 Slc36a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029624.1 MGP_C57BL6NJ_G0018718.1 mouse_genomes_project 11 56321099 56323317 - MGP_C57BL6NJ_P0029624 Slc36a3 protein_coding protein_coding MGP_C57BL6NJ_T0009870.1 MGP_C57BL6NJ_G0007955.1 mouse_genomes_project 11 51002067 51002162 - Mir804 miRNA miRNA MGP_C57BL6NJ_T0032245.1 MGP_C57BL6NJ_G0019366.1 mouse_genomes_project 11 100239325 100255186 + MGP_C57BL6NJ_P0032245 Ppp1r9b protein_coding protein_coding MGP_C57BL6NJ_T0032246.1 MGP_C57BL6NJ_G0019366.1 mouse_genomes_project 11 100241170 100249617 + Ppp1r9b protein_coding processed_transcript MGP_C57BL6NJ_T0032247.1 MGP_C57BL6NJ_G0019366.1 mouse_genomes_project 11 100244354 100255186 + MGP_C57BL6NJ_P0032247 Ppp1r9b protein_coding protein_coding MGP_C57BL6NJ_T0003478.1 MGP_C57BL6NJ_G0003197.1 mouse_genomes_project 11 115408102 115412669 - Cep112os1 antisense antisense MGP_C57BL6NJ_T0012950.1 MGP_C57BL6NJ_G0010995.1 mouse_genomes_project 11 67344129 67344719 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030448.1 MGP_C57BL6NJ_G0018932.1 mouse_genomes_project 11 72198159 72200006 + MGP_C57BL6NJ_P0030448 Sat2 protein_coding protein_coding MGP_C57BL6NJ_T0030449.1 MGP_C57BL6NJ_G0018932.1 mouse_genomes_project 11 72198187 72199594 + Sat2 protein_coding retained_intron MGP_C57BL6NJ_T0030450.1 MGP_C57BL6NJ_G0018932.1 mouse_genomes_project 11 72198187 72200006 + MGP_C57BL6NJ_P0030450 Sat2 protein_coding protein_coding MGP_C57BL6NJ_T0032288.1 MGP_C57BL6NJ_G0019376.1 mouse_genomes_project 11 100682094 100765406 + MGP_C57BL6NJ_P0032288 Spop protein_coding protein_coding MGP_C57BL6NJ_T0032289.1 MGP_C57BL6NJ_G0019376.1 mouse_genomes_project 11 100682094 100746493 + MGP_C57BL6NJ_P0032289 Spop protein_coding protein_coding MGP_C57BL6NJ_T0032290.1 MGP_C57BL6NJ_G0019376.1 mouse_genomes_project 11 100682199 100746514 + MGP_C57BL6NJ_P0032290 Spop protein_coding protein_coding MGP_C57BL6NJ_T0032291.1 MGP_C57BL6NJ_G0019376.1 mouse_genomes_project 11 100682288 100765406 + MGP_C57BL6NJ_P0032291 Spop protein_coding protein_coding MGP_C57BL6NJ_T0032292.1 MGP_C57BL6NJ_G0019376.1 mouse_genomes_project 11 100746497 100762315 + Spop protein_coding processed_transcript MGP_C57BL6NJ_T0032293.1 MGP_C57BL6NJ_G0019377.1 mouse_genomes_project 11 100781845 100786571 - MGP_C57BL6NJ_P0032293 Nxph3 protein_coding protein_coding MGP_C57BL6NJ_T0033515.1 MGP_C57BL6NJ_G0019699.1 mouse_genomes_project 11 113023196 113028222 - MGP_C57BL6NJ_P0033515 Icam2 protein_coding protein_coding MGP_C57BL6NJ_T0033516.1 MGP_C57BL6NJ_G0019699.1 mouse_genomes_project 11 113024100 113026242 - MGP_C57BL6NJ_P0033516 Icam2 protein_coding protein_coding MGP_C57BL6NJ_T0033517.1 MGP_C57BL6NJ_G0019699.1 mouse_genomes_project 11 113024346 113035127 - MGP_C57BL6NJ_P0033517 Icam2 protein_coding protein_coding MGP_C57BL6NJ_T0033518.1 MGP_C57BL6NJ_G0019699.1 mouse_genomes_project 11 113026128 113035130 - MGP_C57BL6NJ_P0033518 Icam2 protein_coding protein_coding MGP_C57BL6NJ_T0033519.1 MGP_C57BL6NJ_G0019699.1 mouse_genomes_project 11 113026485 113028437 - Icam2 protein_coding retained_intron MGP_C57BL6NJ_T0029785.1 MGP_C57BL6NJ_G0018784.1 mouse_genomes_project 11 60898760 60902361 + MGP_C57BL6NJ_P0029785 2310033P09Rik protein_coding protein_coding MGP_C57BL6NJ_T0029160.1 MGP_C57BL6NJ_G0018596.1 mouse_genomes_project 11 47123006 47161020 + MGP_C57BL6NJ_P0029160 Timd4 protein_coding protein_coding MGP_C57BL6NJ_T0009908.1 MGP_C57BL6NJ_G0007993.1 mouse_genomes_project 11 78596317 78596412 + Mir22 miRNA miRNA MGP_C57BL6NJ_T0030197.1 MGP_C57BL6NJ_G0018874.1 mouse_genomes_project 11 69334144 69344335 + MGP_C57BL6NJ_P0030197 Tmem220 protein_coding protein_coding MGP_C57BL6NJ_T0030198.1 MGP_C57BL6NJ_G0018874.1 mouse_genomes_project 11 69334144 69343781 + MGP_C57BL6NJ_P0030198 Tmem220 protein_coding protein_coding MGP_C57BL6NJ_T0034363.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127435657 127452279 - MGP_C57BL6NJ_P0034363 Eif4a3 protein_coding protein_coding MGP_C57BL6NJ_T0034364.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127435658 127436371 - Eif4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0034365.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127435658 127436305 - Eif4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0034366.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127442503 127445788 - Eif4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0034367.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127442844 127452204 - MGP_C57BL6NJ_P0034367 Eif4a3 protein_coding protein_coding MGP_C57BL6NJ_T0034368.1 MGP_C57BL6NJ_G0019870.1 mouse_genomes_project 11 127449883 127452208 - Eif4a3 protein_coding processed_transcript MGP_C57BL6NJ_T0028869.1 MGP_C57BL6NJ_G0018514.1 mouse_genomes_project 11 30280849 30280936 - MGP_C57BL6NJ_P0028869 Gm17332 protein_coding protein_coding MGP_C57BL6NJ_T0031063.1 MGP_C57BL6NJ_G0019081.1 mouse_genomes_project 11 77309781 77310797 + MGP_C57BL6NJ_P0031063 protein_coding protein_coding MGP_C57BL6NJ_T0012923.1 MGP_C57BL6NJ_G0010968.1 mouse_genomes_project 11 59642502 59643776 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030205.1 MGP_C57BL6NJ_G0018876.1 mouse_genomes_project 11 69362934 69376849 + MGP_C57BL6NJ_P0030205 Sco1 protein_coding protein_coding MGP_C57BL6NJ_T0030206.1 MGP_C57BL6NJ_G0018876.1 mouse_genomes_project 11 69362934 69377087 + MGP_C57BL6NJ_P0030206 Sco1 protein_coding protein_coding MGP_C57BL6NJ_T0030207.1 MGP_C57BL6NJ_G0018876.1 mouse_genomes_project 11 69365292 69375594 + Sco1 protein_coding processed_transcript MGP_C57BL6NJ_T0030208.1 MGP_C57BL6NJ_G0018876.1 mouse_genomes_project 11 69369844 69378585 + Sco1 protein_coding processed_transcript MGP_C57BL6NJ_T0012807.1 MGP_C57BL6NJ_G0010852.1 mouse_genomes_project 11 18351566 18351830 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034543.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128873659 128881799 - MGP_C57BL6NJ_P0034543 Pcyt2 protein_coding protein_coding MGP_C57BL6NJ_T0034544.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128874215 128881788 - MGP_C57BL6NJ_P0034544 Pcyt2 protein_coding protein_coding MGP_C57BL6NJ_T0034545.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128874470 128875908 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034546.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128874674 128875880 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034547.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128875426 128876873 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034548.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128876003 128881771 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034549.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128876394 128877494 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034550.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128876733 128877388 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034551.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128876775 128878324 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034552.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128876828 128881776 - Pcyt2 protein_coding processed_transcript MGP_C57BL6NJ_T0034553.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128879038 128881773 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0034554.1 MGP_C57BL6NJ_G0019906.1 mouse_genomes_project 11 128879309 128881732 - Pcyt2 protein_coding retained_intron MGP_C57BL6NJ_T0012759.1 MGP_C57BL6NJ_G0010804.1 mouse_genomes_project 11 2768867 2769311 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033536.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483224 113502772 + MGP_C57BL6NJ_P0033536 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033537.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483238 113501107 + MGP_C57BL6NJ_P0033537 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033538.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483238 113501530 + MGP_C57BL6NJ_P0033538 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033539.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483238 113501107 + MGP_C57BL6NJ_P0033539 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033540.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483263 113502697 + MGP_C57BL6NJ_P0033540 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033541.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483266 113502695 + MGP_C57BL6NJ_P0033541 Milr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033542.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113483266 113501743 + MGP_C57BL6NJ_P0033542 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0033543.1 MGP_C57BL6NJ_G0019703.1 mouse_genomes_project 11 113486941 113502698 + MGP_C57BL6NJ_P0033543 Milr1 protein_coding protein_coding MGP_C57BL6NJ_T0099755.1 MGP_C57BL6NJ_G0037801.1 mouse_genomes_project 11 59131441 59131544 + Gm24582 snRNA snRNA MGP_C57BL6NJ_T0099773.1 MGP_C57BL6NJ_G0037819.1 mouse_genomes_project 11 83228801 83228904 - Gm25867 snRNA snRNA MGP_C57BL6NJ_T0030713.1 MGP_C57BL6NJ_G0018987.1 mouse_genomes_project 11 73127906 73133642 - MGP_C57BL6NJ_P0030713 Cxcl16 protein_coding protein_coding MGP_C57BL6NJ_T0030714.1 MGP_C57BL6NJ_G0018987.1 mouse_genomes_project 11 73128161 73133066 - MGP_C57BL6NJ_P0030714 Cxcl16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030715.1 MGP_C57BL6NJ_G0018987.1 mouse_genomes_project 11 73128873 73133490 - Cxcl16 protein_coding retained_intron MGP_C57BL6NJ_T0003409.1 MGP_C57BL6NJ_G0003141.1 mouse_genomes_project 11 93631025 93635371 + Dgkeos antisense antisense MGP_C57BL6NJ_T0003410.1 MGP_C57BL6NJ_G0003141.1 mouse_genomes_project 11 93632384 93635371 + Dgkeos antisense antisense MGP_C57BL6NJ_T0003411.1 MGP_C57BL6NJ_G0003141.1 mouse_genomes_project 11 93632570 93634159 + Dgkeos antisense antisense MGP_C57BL6NJ_T0003412.1 MGP_C57BL6NJ_G0003141.1 mouse_genomes_project 11 93632574 93634159 + Dgkeos antisense antisense MGP_C57BL6NJ_T0031940.1 MGP_C57BL6NJ_G0019293.1 mouse_genomes_project 11 91377088 91476052 + MGP_C57BL6NJ_P0031940 Trim37 protein_coding protein_coding MGP_C57BL6NJ_T0031941.1 MGP_C57BL6NJ_G0019293.1 mouse_genomes_project 11 91377316 91401632 + MGP_C57BL6NJ_P0031941 Trim37 protein_coding protein_coding MGP_C57BL6NJ_T0031942.1 MGP_C57BL6NJ_G0019293.1 mouse_genomes_project 11 91440005 91462874 + Trim37 protein_coding retained_intron MGP_C57BL6NJ_T0031943.1 MGP_C57BL6NJ_G0019293.1 mouse_genomes_project 11 91443560 91473627 + MGP_C57BL6NJ_P0031943 Trim37 protein_coding protein_coding MGP_C57BL6NJ_T0099767.1 MGP_C57BL6NJ_G0037813.1 mouse_genomes_project 11 76755829 76755936 + Gm22381 snRNA snRNA MGP_C57BL6NJ_T0099776.1 MGP_C57BL6NJ_G0037822.1 mouse_genomes_project 11 87188232 87188423 + Gm23444 snRNA snRNA MGP_C57BL6NJ_T0029321.1 MGP_C57BL6NJ_G0018640.1 mouse_genomes_project 11 51253943 51466739 + MGP_C57BL6NJ_P0029321 Adamts2 protein_coding protein_coding MGP_C57BL6NJ_T0029322.1 MGP_C57BL6NJ_G0018640.1 mouse_genomes_project 11 51254665 51455564 + MGP_C57BL6NJ_P0029322 Adamts2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029323.1 MGP_C57BL6NJ_G0018640.1 mouse_genomes_project 11 51433420 51434257 + Adamts2 protein_coding processed_transcript MGP_C57BL6NJ_T0029324.1 MGP_C57BL6NJ_G0018640.1 mouse_genomes_project 11 51438908 51439937 + Adamts2 protein_coding processed_transcript MGP_C57BL6NJ_T0029325.1 MGP_C57BL6NJ_G0018640.1 mouse_genomes_project 11 51454345 51457275 + Adamts2 protein_coding processed_transcript MGP_C57BL6NJ_T0012770.1 MGP_C57BL6NJ_G0010815.1 mouse_genomes_project 11 4025208 4026010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028976.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33598539 34172709 - MGP_C57BL6NJ_P0028976 Dock2 protein_coding protein_coding MGP_C57BL6NJ_T0028977.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33602283 33603395 - Dock2 protein_coding retained_intron MGP_C57BL6NJ_T0028978.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33645516 34172709 - MGP_C57BL6NJ_P0028978 Dock2 protein_coding protein_coding MGP_C57BL6NJ_T0028979.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33680127 33685112 - Dock2 protein_coding retained_intron MGP_C57BL6NJ_T0028982.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33736507 34074052 - MGP_C57BL6NJ_P0028982 Dock2 protein_coding protein_coding MGP_C57BL6NJ_T0028983.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33814902 34172700 - Dock2 protein_coding retained_intron MGP_C57BL6NJ_T0028984.1 MGP_C57BL6NJ_G0018547.1 mouse_genomes_project 11 33814902 34172709 - MGP_C57BL6NJ_P0028984 Dock2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032336.1 MGP_C57BL6NJ_G0019391.1 mouse_genomes_project 11 101459715 101475480 - MGP_C57BL6NJ_P0032336 Calcoco2 protein_coding protein_coding MGP_C57BL6NJ_T0028277.1 MGP_C57BL6NJ_G0018381.1 mouse_genomes_project 11 1787861 1797748 - MGP_C57BL6NJ_P0028277 Cabp7 protein_coding protein_coding MGP_C57BL6NJ_T0029578.1 MGP_C57BL6NJ_G0018707.1 mouse_genomes_project 11 55500050 55554405 + Meikin protein_coding retained_intron MGP_C57BL6NJ_T0029579.1 MGP_C57BL6NJ_G0018707.1 mouse_genomes_project 11 55500050 55554440 + MGP_C57BL6NJ_P0029579 Meikin protein_coding protein_coding MGP_C57BL6NJ_T0011578.1 MGP_C57BL6NJ_G0009663.1 mouse_genomes_project 11 125049586 125049914 + Gm22667 misc_RNA misc_RNA MGP_C57BL6NJ_T0029688.1 MGP_C57BL6NJ_G0018740.1 mouse_genomes_project 11 59788096 59795641 + MGP_C57BL6NJ_P0029688 Zfp692 protein_coding protein_coding MGP_C57BL6NJ_T0029689.1 MGP_C57BL6NJ_G0018740.1 mouse_genomes_project 11 59788199 59795655 + MGP_C57BL6NJ_P0029689 Zfp692 protein_coding protein_coding MGP_C57BL6NJ_T0029457.1 MGP_C57BL6NJ_G0018678.1 mouse_genomes_project 11 53689710 54130062 + MGP_C57BL6NJ_P0029457 Fstl4 protein_coding protein_coding MGP_C57BL6NJ_T0013083.1 MGP_C57BL6NJ_G0011128.1 mouse_genomes_project 11 123448615 123448829 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029101.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44759185 45173711 + MGP_C57BL6NJ_P0029101 Ebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029102.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44759185 45174245 + MGP_C57BL6NJ_P0029102 Ebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029103.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44759185 45176808 + MGP_C57BL6NJ_P0029103 Ebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029104.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44759731 44789301 + Ebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029105.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44759794 44785950 + Ebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029106.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 44764263 44785940 + Ebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029107.1 MGP_C57BL6NJ_G0018578.1 mouse_genomes_project 11 45075611 45140629 + Ebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0099328.1 MGP_C57BL6NJ_G0037390.1 mouse_genomes_project 11 114307566 114308758 + Gm11722 sense_intronic sense_intronic MGP_C57BL6NJ_T0003389.1 MGP_C57BL6NJ_G0003126.1 mouse_genomes_project 11 84772086 84783046 + Gm11417 antisense antisense MGP_C57BL6NJ_T0003418.1 MGP_C57BL6NJ_G0003147.1 mouse_genomes_project 11 100998932 101015855 - Zfp652os antisense antisense MGP_C57BL6NJ_T0034708.1 MGP_C57BL6NJ_G0019937.1 mouse_genomes_project 11 129682546 129720130 - MGP_C57BL6NJ_P0034708 Wdr45b protein_coding protein_coding MGP_C57BL6NJ_T0034709.1 MGP_C57BL6NJ_G0019937.1 mouse_genomes_project 11 129684473 129697622 - Wdr45b protein_coding processed_transcript MGP_C57BL6NJ_T0034710.1 MGP_C57BL6NJ_G0019937.1 mouse_genomes_project 11 129687334 129720026 - MGP_C57BL6NJ_P0034710 Wdr45b protein_coding protein_coding MGP_C57BL6NJ_T0034711.1 MGP_C57BL6NJ_G0019937.1 mouse_genomes_project 11 129691614 129720078 - MGP_C57BL6NJ_P0034711 Wdr45b protein_coding protein_coding MGP_C57BL6NJ_T0034712.1 MGP_C57BL6NJ_G0019937.1 mouse_genomes_project 11 129711391 129720086 - Wdr45b protein_coding retained_intron MGP_C57BL6NJ_T0031531.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82791095 82807511 - MGP_C57BL6NJ_P0031531 Wsb1 protein_coding protein_coding MGP_C57BL6NJ_T0031532.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82791111 82794748 - Wsb1 protein_coding retained_intron MGP_C57BL6NJ_T0031533.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82791999 82800383 - MGP_C57BL6NJ_P0031533 Wsb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031534.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82792030 82794673 - Wsb1 protein_coding processed_transcript MGP_C57BL6NJ_T0031535.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82795011 82807509 - MGP_C57BL6NJ_P0031535 Wsb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031536.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82795123 82807310 - MGP_C57BL6NJ_P0031536 Wsb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031537.1 MGP_C57BL6NJ_G0019186.1 mouse_genomes_project 11 82795831 82803864 - Wsb1 protein_coding retained_intron MGP_C57BL6NJ_T0033881.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123127172 123142670 + MGP_C57BL6NJ_P0033881 Slc16a5 protein_coding protein_coding MGP_C57BL6NJ_T0033882.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123127204 123137611 + MGP_C57BL6NJ_P0033882 Slc16a5 protein_coding protein_coding MGP_C57BL6NJ_T0033883.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123127262 123137716 + Slc16a5 protein_coding processed_transcript MGP_C57BL6NJ_T0033884.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123127307 123141193 + MGP_C57BL6NJ_P0033884 Slc16a5 protein_coding protein_coding MGP_C57BL6NJ_T0033885.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123128498 123142670 + Slc16a5 protein_coding processed_transcript MGP_C57BL6NJ_T0033886.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123128513 123129703 + Slc16a5 protein_coding processed_transcript MGP_C57BL6NJ_T0033887.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123128516 123137716 + Slc16a5 protein_coding processed_transcript MGP_C57BL6NJ_T0033888.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123128522 123137660 + Slc16a5 protein_coding processed_transcript MGP_C57BL6NJ_T0033889.1 MGP_C57BL6NJ_G0019781.1 mouse_genomes_project 11 123129254 123141878 + Slc16a5 protein_coding retained_intron MGP_C57BL6NJ_T0031430.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81641659 81645987 + MGP_C57BL6NJ_P0031430 Rab34 protein_coding protein_coding MGP_C57BL6NJ_T0031431.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81642098 81646334 + MGP_C57BL6NJ_P0031431 Rab34 protein_coding protein_coding MGP_C57BL6NJ_T0031432.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81642459 81643526 + Rab34 protein_coding retained_intron MGP_C57BL6NJ_T0031433.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81642556 81646345 + MGP_C57BL6NJ_P0031433 Rab34 protein_coding protein_coding MGP_C57BL6NJ_T0031434.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81642807 81645263 + Rab34 protein_coding retained_intron MGP_C57BL6NJ_T0031435.1 MGP_C57BL6NJ_G0019159.1 mouse_genomes_project 11 81643572 81644153 + Rab34 protein_coding retained_intron MGP_C57BL6NJ_T0012868.1 MGP_C57BL6NJ_G0010913.1 mouse_genomes_project 11 35464994 35465730 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032845.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106674819 106684229 - MGP_C57BL6NJ_P0032845 Dhx58 protein_coding protein_coding MGP_C57BL6NJ_T0032846.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106674998 106676556 - Dhx58 protein_coding processed_transcript MGP_C57BL6NJ_T0032847.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106675188 106679193 - Dhx58 protein_coding processed_transcript MGP_C57BL6NJ_T0032848.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106681349 106684211 - Dhx58 protein_coding processed_transcript MGP_C57BL6NJ_T0032849.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106682105 106683305 - Dhx58 protein_coding processed_transcript MGP_C57BL6NJ_T0032850.1 MGP_C57BL6NJ_G0019555.1 mouse_genomes_project 11 106682717 106684229 - Dhx58 protein_coding processed_transcript MGP_C57BL6NJ_T0032893.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107019991 107031866 + Atp6v0a1 protein_coding processed_transcript MGP_C57BL6NJ_T0032894.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107019991 107056927 + Atp6v0a1 protein_coding processed_transcript MGP_C57BL6NJ_T0032895.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107019991 107074520 + MGP_C57BL6NJ_P0032895 Atp6v0a1 protein_coding protein_coding MGP_C57BL6NJ_T0032896.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107019991 107075815 + MGP_C57BL6NJ_P0032896 Atp6v0a1 protein_coding protein_coding MGP_C57BL6NJ_T0032897.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107020026 107075809 + MGP_C57BL6NJ_P0032897 Atp6v0a1 protein_coding protein_coding MGP_C57BL6NJ_T0032898.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107021196 107030971 + MGP_C57BL6NJ_P0032898 Atp6v0a1 protein_coding protein_coding MGP_C57BL6NJ_T0032899.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107022360 107075815 + MGP_C57BL6NJ_P0032899 Atp6v0a1 protein_coding protein_coding MGP_C57BL6NJ_T0032900.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107031592 107037956 + Atp6v0a1 protein_coding processed_transcript MGP_C57BL6NJ_T0032901.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107051949 107061341 + Atp6v0a1 protein_coding processed_transcript MGP_C57BL6NJ_T0032902.1 MGP_C57BL6NJ_G0019566.1 mouse_genomes_project 11 107055918 107056930 + Atp6v0a1 protein_coding processed_transcript MGP_C57BL6NJ_T0028889.1 MGP_C57BL6NJ_G0018521.1 mouse_genomes_project 11 31408219 31411789 + MGP_C57BL6NJ_P0028889 Snrnp25 protein_coding protein_coding MGP_C57BL6NJ_T0028890.1 MGP_C57BL6NJ_G0018521.1 mouse_genomes_project 11 31408250 31411213 + MGP_C57BL6NJ_P0028890 Snrnp25 protein_coding protein_coding MGP_C57BL6NJ_T0028891.1 MGP_C57BL6NJ_G0018521.1 mouse_genomes_project 11 31408262 31410456 + Snrnp25 protein_coding processed_transcript MGP_C57BL6NJ_T0028892.1 MGP_C57BL6NJ_G0018521.1 mouse_genomes_project 11 31408292 31411678 + MGP_C57BL6NJ_P0028892 Snrnp25 protein_coding protein_coding MGP_C57BL6NJ_T0028893.1 MGP_C57BL6NJ_G0018521.1 mouse_genomes_project 11 31409566 31411789 + Snrnp25 protein_coding retained_intron MGP_C57BL6NJ_T0032470.1 MGP_C57BL6NJ_G0019425.1 mouse_genomes_project 11 103020567 103030068 - MGP_C57BL6NJ_P0032470 4933428G20Rik protein_coding protein_coding MGP_C57BL6NJ_T0033894.1 MGP_C57BL6NJ_G0019783.1 mouse_genomes_project 11 123159028 123160424 - MGP_C57BL6NJ_P0033894 Nt5c protein_coding protein_coding MGP_C57BL6NJ_T0033895.1 MGP_C57BL6NJ_G0019783.1 mouse_genomes_project 11 123159028 123160471 - MGP_C57BL6NJ_P0033895 Nt5c protein_coding protein_coding MGP_C57BL6NJ_T0033896.1 MGP_C57BL6NJ_G0019783.1 mouse_genomes_project 11 123159246 123160460 - Nt5c protein_coding retained_intron MGP_C57BL6NJ_T0033897.1 MGP_C57BL6NJ_G0019783.1 mouse_genomes_project 11 123159308 123159811 - Nt5c protein_coding retained_intron MGP_C57BL6NJ_T0033898.1 MGP_C57BL6NJ_G0019783.1 mouse_genomes_project 11 123159379 123159980 - Nt5c protein_coding retained_intron MGP_C57BL6NJ_T0031753.1 MGP_C57BL6NJ_G0019251.1 mouse_genomes_project 11 87663957 87666291 + MGP_C57BL6NJ_P0031753 Wfdc18 protein_coding protein_coding MGP_C57BL6NJ_T0031754.1 MGP_C57BL6NJ_G0019251.1 mouse_genomes_project 11 87664065 87666282 + MGP_C57BL6NJ_P0031754 Wfdc18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031755.1 MGP_C57BL6NJ_G0019251.1 mouse_genomes_project 11 87664067 87665641 + Wfdc18 protein_coding retained_intron MGP_C57BL6NJ_T0012892.1 MGP_C57BL6NJ_G0010937.1 mouse_genomes_project 11 49196009 49207991 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029704.1 MGP_C57BL6NJ_G0018743.1 mouse_genomes_project 11 59877906 59891178 + MGP_C57BL6NJ_P0029704 Lypd8 protein_coding protein_coding MGP_C57BL6NJ_T0029705.1 MGP_C57BL6NJ_G0018743.1 mouse_genomes_project 11 59877906 59890987 + MGP_C57BL6NJ_P0029705 Lypd8 protein_coding protein_coding MGP_C57BL6NJ_T0009861.1 MGP_C57BL6NJ_G0007946.1 mouse_genomes_project 11 37652932 37653017 - Gm25693 miRNA miRNA MGP_C57BL6NJ_T0028582.1 MGP_C57BL6NJ_G0018450.1 mouse_genomes_project 11 15209389 15264655 + Wdr92 protein_coding processed_transcript MGP_C57BL6NJ_T0028586.1 MGP_C57BL6NJ_G0018450.1 mouse_genomes_project 11 15243936 15265537 + MGP_C57BL6NJ_P0028586 Wdr92 protein_coding protein_coding MGP_C57BL6NJ_T0009857.1 MGP_C57BL6NJ_G0007942.1 mouse_genomes_project 11 27732259 27732367 + Mir217 miRNA miRNA MGP_C57BL6NJ_T0006494.1 MGP_C57BL6NJ_G0005410.1 mouse_genomes_project 11 102137800 102175074 - 2010300F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006495.1 MGP_C57BL6NJ_G0005410.1 mouse_genomes_project 11 102173669 102175048 - 2010300F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0031480.1 MGP_C57BL6NJ_G0019169.1 mouse_genomes_project 11 81830795 81859749 - MGP_C57BL6NJ_P0031480 Foxn1 protein_coding protein_coding MGP_C57BL6NJ_T0101006.1 MGP_C57BL6NJ_G0039052.1 mouse_genomes_project 11 404542 404659 - Gm24439 snoRNA snoRNA MGP_C57BL6NJ_T0029149.1 MGP_C57BL6NJ_G0018593.1 mouse_genomes_project 11 46873788 46912097 - MGP_C57BL6NJ_P0029149 Dppa1 protein_coding protein_coding MGP_C57BL6NJ_T0029150.1 MGP_C57BL6NJ_G0018593.1 mouse_genomes_project 11 46876602 46912097 - MGP_C57BL6NJ_P0029150 Dppa1 protein_coding protein_coding MGP_C57BL6NJ_T0099744.1 MGP_C57BL6NJ_G0037790.1 mouse_genomes_project 11 25126993 25127157 - Gm22868 snRNA snRNA MGP_C57BL6NJ_T0009952.1 MGP_C57BL6NJ_G0008037.1 mouse_genomes_project 11 110898398 110898543 - miRNA miRNA MGP_C57BL6NJ_T0012855.1 MGP_C57BL6NJ_G0010900.1 mouse_genomes_project 11 29888665 29889027 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003474.1 MGP_C57BL6NJ_G0003193.1 mouse_genomes_project 11 114201336 114203323 + Gm11712 antisense antisense MGP_C57BL6NJ_T0012964.1 MGP_C57BL6NJ_G0011009.1 mouse_genomes_project 11 73482852 73483125 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003315.1 MGP_C57BL6NJ_G0003065.1 mouse_genomes_project 11 55467755 55482891 - Gm12224 antisense antisense MGP_C57BL6NJ_T0003316.1 MGP_C57BL6NJ_G0003065.1 mouse_genomes_project 11 55472020 55482842 - Gm12224 antisense antisense MGP_C57BL6NJ_T0029709.1 MGP_C57BL6NJ_G0018747.1 mouse_genomes_project 11 59965290 59966356 - MGP_C57BL6NJ_P0029709 Olfr30 protein_coding protein_coding MGP_C57BL6NJ_T0031335.1 MGP_C57BL6NJ_G0019141.1 mouse_genomes_project 11 80885072 80890992 + MGP_C57BL6NJ_P0031335 Abhd15 protein_coding protein_coding MGP_C57BL6NJ_T0031336.1 MGP_C57BL6NJ_G0019141.1 mouse_genomes_project 11 80885935 80909538 + MGP_C57BL6NJ_P0031336 Abhd15 protein_coding protein_coding MGP_C57BL6NJ_T0031338.1 MGP_C57BL6NJ_G0019141.1 mouse_genomes_project 11 80889564 80909536 + MGP_C57BL6NJ_P0031338 Abhd15 protein_coding protein_coding MGP_C57BL6NJ_T0098963.1 MGP_C57BL6NJ_G0037027.1 mouse_genomes_project 11 70469356 70469482 + Gm26157 rRNA rRNA MGP_C57BL6NJ_T0030761.1 MGP_C57BL6NJ_G0018998.1 mouse_genomes_project 11 73344511 73347374 - MGP_C57BL6NJ_P0030761 Slc25a11 protein_coding protein_coding MGP_C57BL6NJ_T0030762.1 MGP_C57BL6NJ_G0018998.1 mouse_genomes_project 11 73345010 73346226 - Slc25a11 protein_coding retained_intron MGP_C57BL6NJ_T0030763.1 MGP_C57BL6NJ_G0018998.1 mouse_genomes_project 11 73345546 73347794 - MGP_C57BL6NJ_P0030763 Slc25a11 protein_coding protein_coding MGP_C57BL6NJ_T0030764.1 MGP_C57BL6NJ_G0018998.1 mouse_genomes_project 11 73346224 73347294 - Slc25a11 protein_coding retained_intron MGP_C57BL6NJ_T0030765.1 MGP_C57BL6NJ_G0018998.1 mouse_genomes_project 11 73346230 73347215 - MGP_C57BL6NJ_P0030765 Slc25a11 protein_coding protein_coding MGP_C57BL6NJ_T0029231.1 MGP_C57BL6NJ_G0018614.1 mouse_genomes_project 11 49833393 49854693 + MGP_C57BL6NJ_P0029231 protein_coding protein_coding MGP_C57BL6NJ_T0032756.1 MGP_C57BL6NJ_G0019531.1 mouse_genomes_project 11 106017970 106021590 - MGP_C57BL6NJ_P0032756 Krt36 protein_coding protein_coding MGP_C57BL6NJ_T0028289.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1940050 1964589 + MGP_C57BL6NJ_P0028289 Nipsnap1 protein_coding protein_coding MGP_C57BL6NJ_T0028290.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1940098 1964006 + MGP_C57BL6NJ_P0028290 Nipsnap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028291.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1940104 1951934 + Nipsnap1 protein_coding processed_transcript MGP_C57BL6NJ_T0028292.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1950723 1959448 + MGP_C57BL6NJ_P0028292 Nipsnap1 protein_coding protein_coding MGP_C57BL6NJ_T0028293.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1950735 1960290 + Nipsnap1 protein_coding processed_transcript MGP_C57BL6NJ_T0028294.1 MGP_C57BL6NJ_G0018383.1 mouse_genomes_project 11 1950793 1951646 + Nipsnap1 protein_coding processed_transcript MGP_C57BL6NJ_T0032742.1 MGP_C57BL6NJ_G0019520.1 mouse_genomes_project 11 105810519 105815115 + MGP_C57BL6NJ_P0032742 protein_coding protein_coding MGP_C57BL6NJ_T0012795.1 MGP_C57BL6NJ_G0010840.1 mouse_genomes_project 11 15100025 15100180 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003295.1 MGP_C57BL6NJ_G0003046.1 mouse_genomes_project 11 43269255 43271957 - Gm12144 antisense antisense MGP_C57BL6NJ_T0033904.1 MGP_C57BL6NJ_G0019785.1 mouse_genomes_project 11 123202484 123216299 - MGP_C57BL6NJ_P0033904 Sumo2 protein_coding protein_coding MGP_C57BL6NJ_T0033905.1 MGP_C57BL6NJ_G0019785.1 mouse_genomes_project 11 123210011 123216199 - Sumo2 protein_coding retained_intron MGP_C57BL6NJ_T0033906.1 MGP_C57BL6NJ_G0019785.1 mouse_genomes_project 11 123214401 123216212 - Sumo2 protein_coding retained_intron MGP_C57BL6NJ_T0031950.1 MGP_C57BL6NJ_G0019296.1 mouse_genomes_project 11 91690401 91881472 + MGP_C57BL6NJ_P0031950 Tex14 protein_coding protein_coding MGP_C57BL6NJ_T0031951.1 MGP_C57BL6NJ_G0019296.1 mouse_genomes_project 11 91716319 91800664 + MGP_C57BL6NJ_P0031951 Tex14 protein_coding protein_coding MGP_C57BL6NJ_T0031952.1 MGP_C57BL6NJ_G0019296.1 mouse_genomes_project 11 91860874 91880606 + MGP_C57BL6NJ_P0031952 Tex14 protein_coding protein_coding MGP_C57BL6NJ_T0031953.1 MGP_C57BL6NJ_G0019296.1 mouse_genomes_project 11 91863154 91881468 + MGP_C57BL6NJ_P0031953 Tex14 protein_coding protein_coding MGP_C57BL6NJ_T0031954.1 MGP_C57BL6NJ_G0019296.1 mouse_genomes_project 11 91867297 91881315 + Tex14 protein_coding processed_transcript MGP_C57BL6NJ_T0012831.1 MGP_C57BL6NJ_G0010876.1 mouse_genomes_project 11 23254638 23256163 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032715.1 MGP_C57BL6NJ_G0019494.1 mouse_genomes_project 11 105390846 105391439 - MGP_C57BL6NJ_P0032715 Krtap1-4 protein_coding protein_coding MGP_C57BL6NJ_T0033650.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116405525 116419234 + MGP_C57BL6NJ_P0033650 Amz2 protein_coding protein_coding MGP_C57BL6NJ_T0033651.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116405555 116437790 + MGP_C57BL6NJ_P0033651 Amz2 protein_coding protein_coding MGP_C57BL6NJ_T0033652.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116405561 116410601 + Amz2 protein_coding retained_intron MGP_C57BL6NJ_T0033653.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116405805 116418078 + MGP_C57BL6NJ_P0033653 Amz2 protein_coding protein_coding MGP_C57BL6NJ_T0033654.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116412271 116415714 + Amz2 protein_coding processed_transcript MGP_C57BL6NJ_T0033655.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116414867 116415819 + Amz2 protein_coding retained_intron MGP_C57BL6NJ_T0033656.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116415080 116418337 + Amz2 protein_coding processed_transcript MGP_C57BL6NJ_T0033657.1 MGP_C57BL6NJ_G0019725.1 mouse_genomes_project 11 116423478 116438231 + Amz2 protein_coding processed_transcript MGP_C57BL6NJ_T0028961.1 MGP_C57BL6NJ_G0018541.1 mouse_genomes_project 11 32891743 32924118 - MGP_C57BL6NJ_P0028961 Gabrp protein_coding protein_coding MGP_C57BL6NJ_T0028962.1 MGP_C57BL6NJ_G0018541.1 mouse_genomes_project 11 32917531 32924120 - MGP_C57BL6NJ_P0028962 Gabrp protein_coding protein_coding MGP_C57BL6NJ_T0033734.1 MGP_C57BL6NJ_G0019744.1 mouse_genomes_project 11 121014066 121039222 - MGP_C57BL6NJ_P0033734 Fam104a protein_coding protein_coding MGP_C57BL6NJ_T0006441.1 MGP_C57BL6NJ_G0005375.1 mouse_genomes_project 11 78545405 78546015 - Gm12336 lincRNA lincRNA MGP_C57BL6NJ_T0029448.1 MGP_C57BL6NJ_G0018676.1 mouse_genomes_project 11 53251194 53280754 + MGP_C57BL6NJ_P0029448 Vdac1 protein_coding protein_coding MGP_C57BL6NJ_T0029449.1 MGP_C57BL6NJ_G0018676.1 mouse_genomes_project 11 53251469 53279853 + MGP_C57BL6NJ_P0029449 Vdac1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029450.1 MGP_C57BL6NJ_G0018676.1 mouse_genomes_project 11 53265455 53268131 + Vdac1 protein_coding processed_transcript MGP_C57BL6NJ_T0029451.1 MGP_C57BL6NJ_G0018676.1 mouse_genomes_project 11 53265618 53279880 + MGP_C57BL6NJ_P0029451 Vdac1 protein_coding protein_coding MGP_C57BL6NJ_T0029452.1 MGP_C57BL6NJ_G0018676.1 mouse_genomes_project 11 53278553 53280148 + Vdac1 protein_coding retained_intron MGP_C57BL6NJ_T0033682.1 MGP_C57BL6NJ_G0019732.1 mouse_genomes_project 11 116948293 117023072 - MGP_C57BL6NJ_P0033682 Abca8b protein_coding protein_coding MGP_C57BL6NJ_T0033683.1 MGP_C57BL6NJ_G0019732.1 mouse_genomes_project 11 116950376 117022970 - MGP_C57BL6NJ_P0033683 Abca8b protein_coding protein_coding MGP_C57BL6NJ_T0006386.1 MGP_C57BL6NJ_G0005330.1 mouse_genomes_project 11 43434184 43435886 + Gm12148 lincRNA lincRNA MGP_C57BL6NJ_T0012963.1 MGP_C57BL6NJ_G0011008.1 mouse_genomes_project 11 73205353 73205672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029953.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63008678 63033295 + MGP_C57BL6NJ_P0029953 Tnfrsf13b protein_coding protein_coding MGP_C57BL6NJ_T0029954.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63008681 63030794 + MGP_C57BL6NJ_P0029954 Tnfrsf13b protein_coding protein_coding MGP_C57BL6NJ_T0029955.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63008712 63030837 + MGP_C57BL6NJ_P0029955 Tnfrsf13b protein_coding protein_coding MGP_C57BL6NJ_T0029956.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63024789 63031565 + MGP_C57BL6NJ_P0029956 Tnfrsf13b protein_coding protein_coding MGP_C57BL6NJ_T0029957.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63026415 63031856 + Tnfrsf13b protein_coding processed_transcript MGP_C57BL6NJ_T0029958.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63026453 63031729 + Tnfrsf13b protein_coding processed_transcript MGP_C57BL6NJ_T0029959.1 MGP_C57BL6NJ_G0018824.1 mouse_genomes_project 11 63026619 63031682 + Tnfrsf13b protein_coding processed_transcript MGP_C57BL6NJ_T0034082.1 MGP_C57BL6NJ_G0019814.1 mouse_genomes_project 11 124032422 124065760 - Srp68 protein_coding processed_transcript MGP_C57BL6NJ_T0034083.1 MGP_C57BL6NJ_G0019814.1 mouse_genomes_project 11 124032422 124065760 - MGP_C57BL6NJ_P0034083 Srp68 protein_coding protein_coding MGP_C57BL6NJ_T0034084.1 MGP_C57BL6NJ_G0019814.1 mouse_genomes_project 11 124032422 124065678 - MGP_C57BL6NJ_P0034084 Srp68 protein_coding protein_coding MGP_C57BL6NJ_T0034085.1 MGP_C57BL6NJ_G0019814.1 mouse_genomes_project 11 124036052 124048595 - Srp68 protein_coding processed_transcript MGP_C57BL6NJ_T0033459.1 MGP_C57BL6NJ_G0019681.1 mouse_genomes_project 11 112620440 112631190 + MGP_C57BL6NJ_P0033459 Ace3 protein_coding protein_coding MGP_C57BL6NJ_T0030038.1 MGP_C57BL6NJ_G0018839.1 mouse_genomes_project 11 63712740 63807464 - MGP_C57BL6NJ_P0030038 Ulk2 protein_coding protein_coding MGP_C57BL6NJ_T0030039.1 MGP_C57BL6NJ_G0018839.1 mouse_genomes_project 11 63714593 63806893 - Ulk2 protein_coding processed_transcript MGP_C57BL6NJ_T0030040.1 MGP_C57BL6NJ_G0018839.1 mouse_genomes_project 11 63741530 63745650 - Ulk2 protein_coding processed_transcript MGP_C57BL6NJ_T0003347.1 MGP_C57BL6NJ_G0003091.1 mouse_genomes_project 11 64664385 64668470 + Lrrc75aos1 antisense antisense MGP_C57BL6NJ_T0029927.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62629792 62652875 - MGP_C57BL6NJ_P0029927 Shmt1 protein_coding protein_coding MGP_C57BL6NJ_T0029928.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62630589 62641013 - Shmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0029929.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62630832 62648631 - MGP_C57BL6NJ_P0029929 Shmt1 protein_coding protein_coding MGP_C57BL6NJ_T0029930.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62630832 62648631 - MGP_C57BL6NJ_P0029930 Shmt1 protein_coding protein_coding MGP_C57BL6NJ_T0029931.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62630832 62648631 - MGP_C57BL6NJ_P0029931 Shmt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029932.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62630936 62636627 - Shmt1 protein_coding retained_intron MGP_C57BL6NJ_T0029933.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62631284 62634862 - Shmt1 protein_coding retained_intron MGP_C57BL6NJ_T0029934.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62634637 62639463 - Shmt1 protein_coding retained_intron MGP_C57BL6NJ_T0029935.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62638854 62652701 - Shmt1 protein_coding retained_intron MGP_C57BL6NJ_T0029936.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62640261 62644280 - Shmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0029937.1 MGP_C57BL6NJ_G0018818.1 mouse_genomes_project 11 62645954 62654758 - Shmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0028755.1 MGP_C57BL6NJ_G0018490.1 mouse_genomes_project 11 25175145 25254275 + MGP_C57BL6NJ_P0028755 Fancl protein_coding protein_coding MGP_C57BL6NJ_T0028756.1 MGP_C57BL6NJ_G0018490.1 mouse_genomes_project 11 25176212 25251523 + Fancl protein_coding processed_transcript MGP_C57BL6NJ_T0028757.1 MGP_C57BL6NJ_G0018490.1 mouse_genomes_project 11 25176212 25210708 + MGP_C57BL6NJ_P0028757 Fancl protein_coding protein_coding MGP_C57BL6NJ_T0028758.1 MGP_C57BL6NJ_G0018490.1 mouse_genomes_project 11 25176212 25253820 + MGP_C57BL6NJ_P0028758 Fancl protein_coding protein_coding MGP_C57BL6NJ_T0028759.1 MGP_C57BL6NJ_G0018490.1 mouse_genomes_project 11 25250733 25253829 + MGP_C57BL6NJ_P0028759 Fancl protein_coding protein_coding MGP_C57BL6NJ_T0031703.1 MGP_C57BL6NJ_G0019231.1 mouse_genomes_project 11 86908431 86913908 + MGP_C57BL6NJ_P0031703 Slfn2 protein_coding protein_coding MGP_C57BL6NJ_T0028190.1 MGP_C57BL6NJ_G0018358.1 mouse_genomes_project 11 865482 875257 - MGP_C57BL6NJ_P0028190 4921536K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0003508.1 MGP_C57BL6NJ_G0003219.1 mouse_genomes_project 11 128012159 128025713 - Rptoros antisense antisense MGP_C57BL6NJ_T0034485.1 MGP_C57BL6NJ_G0019892.1 mouse_genomes_project 11 128703500 128704963 - MGP_C57BL6NJ_P0034485 Oxld1 protein_coding protein_coding MGP_C57BL6NJ_T0034486.1 MGP_C57BL6NJ_G0019892.1 mouse_genomes_project 11 128703779 128704831 - MGP_C57BL6NJ_P0034486 Oxld1 protein_coding protein_coding MGP_C57BL6NJ_T0033298.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448327 109461749 + MGP_C57BL6NJ_P0033298 Acbd4 protein_coding protein_coding MGP_C57BL6NJ_T0033299.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448327 109461752 + MGP_C57BL6NJ_P0033299 Acbd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033300.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448331 109450667 + Acbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0033301.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448331 109452038 + MGP_C57BL6NJ_P0033301 Acbd4 protein_coding protein_coding MGP_C57BL6NJ_T0033302.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448333 109461751 + MGP_C57BL6NJ_P0033302 Acbd4 protein_coding protein_coding MGP_C57BL6NJ_T0033303.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448354 109450031 + Acbd4 protein_coding retained_intron MGP_C57BL6NJ_T0033304.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448357 109450820 + MGP_C57BL6NJ_P0033304 Acbd4 protein_coding protein_coding MGP_C57BL6NJ_T0033305.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109448371 109449869 + Acbd4 protein_coding retained_intron MGP_C57BL6NJ_T0033306.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109449666 109452112 + MGP_C57BL6NJ_P0033306 Acbd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033307.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109449719 109452097 + Acbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0033308.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109449721 109451492 + MGP_C57BL6NJ_P0033308 Acbd4 protein_coding protein_coding MGP_C57BL6NJ_T0033309.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109449753 109450744 + Acbd4 protein_coding retained_intron MGP_C57BL6NJ_T0033310.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109449897 109451128 + Acbd4 protein_coding retained_intron MGP_C57BL6NJ_T0033311.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109451350 109461505 + Acbd4 protein_coding retained_intron MGP_C57BL6NJ_T0033312.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109452828 109461291 + Acbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0033313.1 MGP_C57BL6NJ_G0019646.1 mouse_genomes_project 11 109452849 109461749 + Acbd4 protein_coding processed_transcript MGP_C57BL6NJ_T0028165.1 MGP_C57BL6NJ_G0018354.1 mouse_genomes_project 11 462902 465567 + Selm protein_coding processed_transcript MGP_C57BL6NJ_T0028166.1 MGP_C57BL6NJ_G0018354.1 mouse_genomes_project 11 462920 465349 + Selm protein_coding processed_transcript MGP_C57BL6NJ_T0028167.1 MGP_C57BL6NJ_G0018354.1 mouse_genomes_project 11 463085 465570 + MGP_C57BL6NJ_P0028167 Selm protein_coding protein_coding MGP_C57BL6NJ_T0101023.1 MGP_C57BL6NJ_G0039069.1 mouse_genomes_project 11 23975040 23975168 - Gm24255 snoRNA snoRNA MGP_C57BL6NJ_T0029667.1 MGP_C57BL6NJ_G0018733.1 mouse_genomes_project 11 59436140 59494877 + MGP_C57BL6NJ_P0029667 Larp1 protein_coding protein_coding MGP_C57BL6NJ_T0029668.1 MGP_C57BL6NJ_G0018733.1 mouse_genomes_project 11 59436140 59494880 + MGP_C57BL6NJ_P0029668 Larp1 protein_coding protein_coding MGP_C57BL6NJ_T0029669.1 MGP_C57BL6NJ_G0018733.1 mouse_genomes_project 11 59471482 59472883 + Larp1 protein_coding retained_intron MGP_C57BL6NJ_T0029738.1 MGP_C57BL6NJ_G0018766.1 mouse_genomes_project 11 60390995 60401900 - MGP_C57BL6NJ_P0029738 Fam183b protein_coding protein_coding MGP_C57BL6NJ_T0029739.1 MGP_C57BL6NJ_G0018766.1 mouse_genomes_project 11 60391009 60401900 - MGP_C57BL6NJ_P0029739 Fam183b protein_coding protein_coding MGP_C57BL6NJ_T0032851.1 MGP_C57BL6NJ_G0019556.1 mouse_genomes_project 11 106684699 106692127 - Kat2a protein_coding processed_transcript MGP_C57BL6NJ_T0032852.1 MGP_C57BL6NJ_G0019556.1 mouse_genomes_project 11 106684699 106692403 - Kat2a protein_coding processed_transcript MGP_C57BL6NJ_T0032853.1 MGP_C57BL6NJ_G0019556.1 mouse_genomes_project 11 106684699 106692419 - MGP_C57BL6NJ_P0032853 Kat2a protein_coding protein_coding MGP_C57BL6NJ_T0032854.1 MGP_C57BL6NJ_G0019556.1 mouse_genomes_project 11 106684699 106692419 - MGP_C57BL6NJ_P0032854 Kat2a protein_coding protein_coding MGP_C57BL6NJ_T0032936.1 MGP_C57BL6NJ_G0019576.1 mouse_genomes_project 11 107219285 107227014 + Cntnap1 protein_coding processed_transcript MGP_C57BL6NJ_T0032938.1 MGP_C57BL6NJ_G0019576.1 mouse_genomes_project 11 107224782 107239474 + MGP_C57BL6NJ_P0032938 Cntnap1 protein_coding protein_coding MGP_C57BL6NJ_T0013096.1 MGP_C57BL6NJ_G0011141.1 mouse_genomes_project 11 129778479 129778814 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006418.1 MGP_C57BL6NJ_G0005358.1 mouse_genomes_project 11 65505987 65511515 + B130011K05Rik lincRNA lincRNA MGP_C57BL6NJ_T0033282.1 MGP_C57BL6NJ_G0019641.1 mouse_genomes_project 11 109215504 109235064 - MGP_C57BL6NJ_P0033282 Kif18b protein_coding protein_coding MGP_C57BL6NJ_T0033283.1 MGP_C57BL6NJ_G0019641.1 mouse_genomes_project 11 109226430 109235028 - Kif18b protein_coding processed_transcript MGP_C57BL6NJ_T0034098.1 MGP_C57BL6NJ_G0019817.1 mouse_genomes_project 11 124128728 124133419 - MGP_C57BL6NJ_P0034098 Foxj1 protein_coding protein_coding MGP_C57BL6NJ_T0028371.1 MGP_C57BL6NJ_G0018399.1 mouse_genomes_project 11 2949072 2961234 + MGP_C57BL6NJ_P0028371 Dbnl protein_coding protein_coding MGP_C57BL6NJ_T0028372.1 MGP_C57BL6NJ_G0018399.1 mouse_genomes_project 11 2949106 2960893 + MGP_C57BL6NJ_P0028372 Dbnl protein_coding protein_coding MGP_C57BL6NJ_T0028373.1 MGP_C57BL6NJ_G0018399.1 mouse_genomes_project 11 2949114 2961567 + MGP_C57BL6NJ_P0028373 Dbnl protein_coding protein_coding MGP_C57BL6NJ_T0102743.1 MGP_C57BL6NJ_G0040538.1 mouse_genomes_project 11 76450399 76450484 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030691.1 MGP_C57BL6NJ_G0018982.1 mouse_genomes_project 11 72935955 72942974 - MGP_C57BL6NJ_P0030691 Alox12e protein_coding protein_coding MGP_C57BL6NJ_T0030692.1 MGP_C57BL6NJ_G0018982.1 mouse_genomes_project 11 72940316 72941923 - Alox12e protein_coding retained_intron MGP_C57BL6NJ_T0030693.1 MGP_C57BL6NJ_G0018982.1 mouse_genomes_project 11 72941339 72942200 - Alox12e protein_coding retained_intron MGP_C57BL6NJ_T0030694.1 MGP_C57BL6NJ_G0018982.1 mouse_genomes_project 11 72941400 72942794 - Alox12e protein_coding retained_intron MGP_C57BL6NJ_T0013087.1 MGP_C57BL6NJ_G0011132.1 mouse_genomes_project 11 125051852 125052300 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030457.1 MGP_C57BL6NJ_G0018934.1 mouse_genomes_project 11 72233166 72234580 + MGP_C57BL6NJ_P0030457 Sox15 protein_coding protein_coding MGP_C57BL6NJ_T0033916.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123276496 123297514 - MGP_C57BL6NJ_P0033916 Gga3 protein_coding protein_coding MGP_C57BL6NJ_T0033917.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123276496 123297514 - MGP_C57BL6NJ_P0033917 Gga3 protein_coding protein_coding MGP_C57BL6NJ_T0033918.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123276496 123297514 - MGP_C57BL6NJ_P0033918 Gga3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033919.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123276605 123282727 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033920.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123277945 123281297 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033921.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123278028 123297347 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033922.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123279826 123280269 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033923.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123280177 123297339 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033924.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123280718 123297351 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033925.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123284847 123297356 - MGP_C57BL6NJ_P0033925 Gga3 protein_coding protein_coding MGP_C57BL6NJ_T0033926.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123285704 123297187 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0033927.1 MGP_C57BL6NJ_G0019787.1 mouse_genomes_project 11 123285722 123297343 - Gga3 protein_coding processed_transcript MGP_C57BL6NJ_T0034002.1 MGP_C57BL6NJ_G0019799.1 mouse_genomes_project 11 123646440 123649877 + MGP_C57BL6NJ_P0034002 Smim6 protein_coding protein_coding MGP_C57BL6NJ_T0028995.1 MGP_C57BL6NJ_G0018553.1 mouse_genomes_project 11 35259798 35285924 - MGP_C57BL6NJ_P0028995 Rars protein_coding protein_coding MGP_C57BL6NJ_T0028996.1 MGP_C57BL6NJ_G0018553.1 mouse_genomes_project 11 35267085 35271527 - Rars protein_coding processed_transcript MGP_C57BL6NJ_T0028997.1 MGP_C57BL6NJ_G0018553.1 mouse_genomes_project 11 35268845 35272921 - Rars protein_coding retained_intron MGP_C57BL6NJ_T0028998.1 MGP_C57BL6NJ_G0018553.1 mouse_genomes_project 11 35272554 35276551 - Rars protein_coding retained_intron MGP_C57BL6NJ_T0028999.1 MGP_C57BL6NJ_G0018553.1 mouse_genomes_project 11 35277912 35285879 - Rars protein_coding processed_transcript MGP_C57BL6NJ_T0006550.1 MGP_C57BL6NJ_G0005455.1 mouse_genomes_project 11 130203601 130203803 + Gm29513 lincRNA lincRNA MGP_C57BL6NJ_T0028532.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9419788 9515511 - MGP_C57BL6NJ_P0028532 Ddc protein_coding protein_coding MGP_C57BL6NJ_T0028533.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9419788 9515411 - MGP_C57BL6NJ_P0028533 Ddc protein_coding protein_coding MGP_C57BL6NJ_T0028534.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9419790 9428617 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0028535.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9419790 9506061 - MGP_C57BL6NJ_P0028535 Ddc protein_coding protein_coding MGP_C57BL6NJ_T0028536.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9425038 9443383 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0028537.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9452079 9475103 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0028538.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9453725 9506022 - MGP_C57BL6NJ_P0028538 Ddc protein_coding protein_coding MGP_C57BL6NJ_T0028539.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9472006 9506054 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0028540.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9485104 9494820 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0028541.1 MGP_C57BL6NJ_G0018440.1 mouse_genomes_project 11 9487043 9506051 - Ddc protein_coding processed_transcript MGP_C57BL6NJ_T0030813.1 MGP_C57BL6NJ_G0019007.1 mouse_genomes_project 11 73517969 73529293 - MGP_C57BL6NJ_P0030813 Scimp protein_coding protein_coding MGP_C57BL6NJ_T0030850.1 MGP_C57BL6NJ_G0019011.1 mouse_genomes_project 11 73721468 73726659 - MGP_C57BL6NJ_P0030850 C1qbp protein_coding protein_coding MGP_C57BL6NJ_T0030851.1 MGP_C57BL6NJ_G0019011.1 mouse_genomes_project 11 73721480 73722504 - C1qbp protein_coding retained_intron MGP_C57BL6NJ_T0030852.1 MGP_C57BL6NJ_G0019011.1 mouse_genomes_project 11 73724642 73726640 - C1qbp protein_coding retained_intron MGP_C57BL6NJ_T0032307.1 MGP_C57BL6NJ_G0019383.1 mouse_genomes_project 11 101141188 101151696 - Abi3 protein_coding processed_transcript MGP_C57BL6NJ_T0032308.1 MGP_C57BL6NJ_G0019383.1 mouse_genomes_project 11 101141935 101151650 - MGP_C57BL6NJ_P0032308 Abi3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032309.1 MGP_C57BL6NJ_G0019383.1 mouse_genomes_project 11 101141945 101145110 - MGP_C57BL6NJ_P0032309 Abi3 protein_coding protein_coding MGP_C57BL6NJ_T0032310.1 MGP_C57BL6NJ_G0019383.1 mouse_genomes_project 11 101146296 101151318 - Abi3 protein_coding processed_transcript MGP_C57BL6NJ_T0031064.1 MGP_C57BL6NJ_G0019082.1 mouse_genomes_project 11 77377655 77378603 - MGP_C57BL6NJ_P0031064 Olfr410 protein_coding protein_coding MGP_C57BL6NJ_T0031656.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579480 86601235 + MGP_C57BL6NJ_P0031656 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031657.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579507 86602643 + MGP_C57BL6NJ_P0031657 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031658.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579514 86594914 + Lig3 protein_coding retained_intron MGP_C57BL6NJ_T0031659.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579557 86599026 + MGP_C57BL6NJ_P0031659 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031660.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579565 86600398 + MGP_C57BL6NJ_P0031660 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031661.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579565 86600399 + MGP_C57BL6NJ_P0031661 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031662.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579570 86588677 + MGP_C57BL6NJ_P0031662 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031663.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579570 86588678 + MGP_C57BL6NJ_P0031663 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031664.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86579575 86602567 + MGP_C57BL6NJ_P0031664 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031665.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86594057 86597923 + Lig3 protein_coding retained_intron MGP_C57BL6NJ_T0031666.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86595590 86597940 + Lig3 protein_coding retained_intron MGP_C57BL6NJ_T0031667.1 MGP_C57BL6NJ_G0019222.1 mouse_genomes_project 11 86596721 86602643 + MGP_C57BL6NJ_P0031667 Lig3 protein_coding protein_coding MGP_C57BL6NJ_T0031419.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81629958 81633728 + MGP_C57BL6NJ_P0031419 Tlcd1 protein_coding protein_coding MGP_C57BL6NJ_T0031420.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81631377 81632870 + MGP_C57BL6NJ_P0031420 Tlcd1 protein_coding protein_coding MGP_C57BL6NJ_T0031421.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81631396 81633402 + Tlcd1 protein_coding processed_transcript MGP_C57BL6NJ_T0031422.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81631898 81635157 + MGP_C57BL6NJ_P0031422 Tlcd1 protein_coding protein_coding MGP_C57BL6NJ_T0031423.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81631932 81634068 + MGP_C57BL6NJ_P0031423 Tlcd1 protein_coding protein_coding MGP_C57BL6NJ_T0031424.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81631978 81632855 + Tlcd1 protein_coding retained_intron MGP_C57BL6NJ_T0031425.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81632009 81633123 + MGP_C57BL6NJ_P0031425 Tlcd1 protein_coding protein_coding MGP_C57BL6NJ_T0031426.1 MGP_C57BL6NJ_G0019157.1 mouse_genomes_project 11 81632520 81633339 + Tlcd1 protein_coding retained_intron MGP_C57BL6NJ_T0012909.1 MGP_C57BL6NJ_G0010954.1 mouse_genomes_project 11 54962988 54965798 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099752.1 MGP_C57BL6NJ_G0037798.1 mouse_genomes_project 11 52780538 52780646 + Gm26061 snRNA snRNA MGP_C57BL6NJ_T0013050.1 MGP_C57BL6NJ_G0011095.1 mouse_genomes_project 11 109030778 109032631 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031875.1 MGP_C57BL6NJ_G0019276.1 mouse_genomes_project 11 90029821 90035285 - MGP_C57BL6NJ_P0031875 Gm11444 protein_coding protein_coding MGP_C57BL6NJ_T0032906.1 MGP_C57BL6NJ_G0019568.1 mouse_genomes_project 11 107104097 107106214 + MGP_C57BL6NJ_P0032906 Hsd17b1 protein_coding protein_coding MGP_C57BL6NJ_T0034020.1 MGP_C57BL6NJ_G0019803.1 mouse_genomes_project 11 123768232 123787480 - MGP_C57BL6NJ_P0034020 H3f3b protein_coding protein_coding MGP_C57BL6NJ_T0034021.1 MGP_C57BL6NJ_G0019803.1 mouse_genomes_project 11 123768281 123784019 - MGP_C57BL6NJ_P0034021 H3f3b protein_coding protein_coding MGP_C57BL6NJ_T0012757.1 MGP_C57BL6NJ_G0010802.1 mouse_genomes_project 11 1992618 1993112 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033237.1 MGP_C57BL6NJ_G0019631.1 mouse_genomes_project 11 108890162 108893825 + MGP_C57BL6NJ_P0033237 Fzd2 protein_coding protein_coding MGP_C57BL6NJ_T0013047.1 MGP_C57BL6NJ_G0011092.1 mouse_genomes_project 11 108758755 108758926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029872.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61994669 62129350 - MGP_C57BL6NJ_P0029872 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029873.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61994670 62007132 - Tom1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0029874.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61994670 62129350 - MGP_C57BL6NJ_P0029874 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029875.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61994670 62129350 - MGP_C57BL6NJ_P0029875 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029876.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61994670 62129350 - MGP_C57BL6NJ_P0029876 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029877.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61997558 61999303 - Tom1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0029878.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61997857 62013121 - MGP_C57BL6NJ_P0029878 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029879.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 61997857 62013633 - MGP_C57BL6NJ_P0029879 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029880.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 62008533 62129350 - MGP_C57BL6NJ_P0029880 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029881.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 62008900 62129350 - MGP_C57BL6NJ_P0029881 Tom1l2 protein_coding protein_coding MGP_C57BL6NJ_T0029882.1 MGP_C57BL6NJ_G0018806.1 mouse_genomes_project 11 62020626 62129350 - Tom1l2 protein_coding processed_transcript MGP_C57BL6NJ_T0009911.1 MGP_C57BL6NJ_G0007996.1 mouse_genomes_project 11 81510626 81510692 + Mir144 miRNA miRNA MGP_C57BL6NJ_T0003431.1 MGP_C57BL6NJ_G0003157.1 mouse_genomes_project 11 103102696 103112163 + antisense antisense MGP_C57BL6NJ_T0003459.1 MGP_C57BL6NJ_G0003180.1 mouse_genomes_project 11 109734607 109736046 + Arhgap27os1 antisense antisense MGP_C57BL6NJ_T0012948.1 MGP_C57BL6NJ_G0010993.1 mouse_genomes_project 11 65918287 65919569 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030209.1 MGP_C57BL6NJ_G0018877.1 mouse_genomes_project 11 69390954 69417472 + MGP_C57BL6NJ_P0030209 Myh3 protein_coding protein_coding MGP_C57BL6NJ_T0030210.1 MGP_C57BL6NJ_G0018877.1 mouse_genomes_project 11 69390954 69417472 + MGP_C57BL6NJ_P0030210 Myh3 protein_coding protein_coding MGP_C57BL6NJ_T0030211.1 MGP_C57BL6NJ_G0018877.1 mouse_genomes_project 11 69390954 69417467 + MGP_C57BL6NJ_P0030211 Myh3 protein_coding protein_coding MGP_C57BL6NJ_T0032593.1 MGP_C57BL6NJ_G0019456.1 mouse_genomes_project 11 104099536 104191420 - MGP_C57BL6NJ_P0032593 Ikzf3 protein_coding protein_coding MGP_C57BL6NJ_T0032594.1 MGP_C57BL6NJ_G0019456.1 mouse_genomes_project 11 104101892 104112011 - Ikzf3 protein_coding processed_transcript MGP_C57BL6NJ_T0032595.1 MGP_C57BL6NJ_G0019456.1 mouse_genomes_project 11 104118806 104124677 - Ikzf3 protein_coding processed_transcript MGP_C57BL6NJ_T0032596.1 MGP_C57BL6NJ_G0019456.1 mouse_genomes_project 11 104148469 104191651 - Ikzf3 protein_coding retained_intron MGP_C57BL6NJ_T0032461.1 MGP_C57BL6NJ_G0019422.1 mouse_genomes_project 11 102843381 102865965 - MGP_C57BL6NJ_P0032461 Gpr179 protein_coding protein_coding MGP_C57BL6NJ_T0032462.1 MGP_C57BL6NJ_G0019422.1 mouse_genomes_project 11 102863379 102866026 - Gpr179 protein_coding retained_intron MGP_C57BL6NJ_T0032670.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104756653 104791793 - MGP_C57BL6NJ_P0032670 Top2a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032671.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104756654 104791916 - MGP_C57BL6NJ_P0032671 Top2a protein_coding protein_coding MGP_C57BL6NJ_T0032672.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104756782 104759436 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0032673.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104757178 104759082 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0032674.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104763658 104764972 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0032675.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104767336 104770218 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0032676.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104784319 104789937 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0032677.1 MGP_C57BL6NJ_G0019473.1 mouse_genomes_project 11 104789811 104791905 - Top2a protein_coding processed_transcript MGP_C57BL6NJ_T0028671.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21459609 21551931 - MGP_C57BL6NJ_P0028671 protein_coding protein_coding MGP_C57BL6NJ_T0028672.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21463232 21551801 - MGP_C57BL6NJ_P0028672 protein_coding protein_coding MGP_C57BL6NJ_T0028673.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21463237 21548545 - MGP_C57BL6NJ_P0028673 protein_coding protein_coding MGP_C57BL6NJ_T0028674.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21463308 21523733 - protein_coding retained_intron MGP_C57BL6NJ_T0028675.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21463496 21541133 - protein_coding processed_transcript MGP_C57BL6NJ_T0028676.1 MGP_C57BL6NJ_G0018474.1 mouse_genomes_project 11 21522937 21551733 - MGP_C57BL6NJ_P0028676 protein_coding protein_coding MGP_C57BL6NJ_T0101041.1 MGP_C57BL6NJ_G0039087.1 mouse_genomes_project 11 64631625 64631697 + Snord49b snoRNA snoRNA MGP_C57BL6NJ_T0006504.1 MGP_C57BL6NJ_G0005417.1 mouse_genomes_project 11 109171232 109423604 + Gm26668 lincRNA lincRNA MGP_C57BL6NJ_T0032724.1 MGP_C57BL6NJ_G0019502.1 mouse_genomes_project 11 105478278 105479290 - MGP_C57BL6NJ_P0032724 Gm11563 protein_coding protein_coding MGP_C57BL6NJ_T0029804.1 MGP_C57BL6NJ_G0018791.1 mouse_genomes_project 11 61171529 61182807 - MGP_C57BL6NJ_P0029804 Zfp867 protein_coding protein_coding MGP_C57BL6NJ_T0101038.1 MGP_C57BL6NJ_G0039084.1 mouse_genomes_project 11 57765547 57765643 + Gm22603 snoRNA snoRNA MGP_C57BL6NJ_T0031560.1 MGP_C57BL6NJ_G0019194.1 mouse_genomes_project 11 83542600 83574552 - MGP_C57BL6NJ_P0031560 Utp6 protein_coding protein_coding MGP_C57BL6NJ_T0031561.1 MGP_C57BL6NJ_G0019194.1 mouse_genomes_project 11 83544232 83574563 - MGP_C57BL6NJ_P0031561 Utp6 protein_coding protein_coding MGP_C57BL6NJ_T0031562.1 MGP_C57BL6NJ_G0019194.1 mouse_genomes_project 11 83546129 83552350 - Utp6 protein_coding retained_intron MGP_C57BL6NJ_T0031563.1 MGP_C57BL6NJ_G0019194.1 mouse_genomes_project 11 83570769 83574540 - Utp6 protein_coding retained_intron MGP_C57BL6NJ_T0029535.1 MGP_C57BL6NJ_G0018700.1 mouse_genomes_project 11 55025934 55081441 - MGP_C57BL6NJ_P0029535 Slc22a21 protein_coding protein_coding MGP_C57BL6NJ_T0029536.1 MGP_C57BL6NJ_G0018700.1 mouse_genomes_project 11 55037997 55038779 - Slc22a21 protein_coding processed_transcript MGP_C57BL6NJ_T0029537.1 MGP_C57BL6NJ_G0018700.1 mouse_genomes_project 11 55045228 55080979 - MGP_C57BL6NJ_P0029537 Slc22a21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029538.1 MGP_C57BL6NJ_G0018700.1 mouse_genomes_project 11 55045320 55070718 - MGP_C57BL6NJ_P0029538 Slc22a21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101061.1 MGP_C57BL6NJ_G0039107.1 mouse_genomes_project 11 82056162 82056253 - Gm22947 snoRNA snoRNA MGP_C57BL6NJ_T0099798.1 MGP_C57BL6NJ_G0037844.1 mouse_genomes_project 11 107791891 107792082 + Gm23849 snRNA snRNA MGP_C57BL6NJ_T0101055.1 MGP_C57BL6NJ_G0039101.1 mouse_genomes_project 11 80375050 80375171 + Gm22772 snoRNA snoRNA MGP_C57BL6NJ_T0012967.1 MGP_C57BL6NJ_G0011012.1 mouse_genomes_project 11 73800641 73801445 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033707.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118085210 118154826 + MGP_C57BL6NJ_P0033707 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0033708.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118085210 118154829 + MGP_C57BL6NJ_P0033708 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0033709.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118085241 118151477 + MGP_C57BL6NJ_P0033709 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0033710.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118124173 118154829 + MGP_C57BL6NJ_P0033710 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0033711.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118150514 118151366 + MGP_C57BL6NJ_P0033711 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0033712.1 MGP_C57BL6NJ_G0019738.1 mouse_genomes_project 11 118150514 118154826 + MGP_C57BL6NJ_P0033712 Kcnj16 protein_coding protein_coding MGP_C57BL6NJ_T0030648.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72758123 72786622 + Clec10a protein_coding retained_intron MGP_C57BL6NJ_T0030649.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72758370 72786665 + Clec10a protein_coding retained_intron MGP_C57BL6NJ_T0030650.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72758545 72787470 + MGP_C57BL6NJ_P0030650 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0030651.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72783826 72789445 + MGP_C57BL6NJ_P0030651 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0030652.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72783858 72789444 + MGP_C57BL6NJ_P0030652 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0030653.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72783870 72789444 + MGP_C57BL6NJ_P0030653 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0030654.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72783934 72785900 + MGP_C57BL6NJ_P0030654 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0030655.1 MGP_C57BL6NJ_G0018974.1 mouse_genomes_project 11 72784898 72787764 + MGP_C57BL6NJ_P0030655 Clec10a protein_coding protein_coding MGP_C57BL6NJ_T0033559.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113526796 113557892 + MGP_C57BL6NJ_P0033559 Cep95 protein_coding protein_coding MGP_C57BL6NJ_T0033560.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113526819 113557885 + MGP_C57BL6NJ_P0033560 Cep95 protein_coding protein_coding MGP_C57BL6NJ_T0033561.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113526831 113528845 + Cep95 protein_coding processed_transcript MGP_C57BL6NJ_T0033562.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113551357 113552871 + Cep95 protein_coding processed_transcript MGP_C57BL6NJ_T0033563.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113553254 113554810 + Cep95 protein_coding processed_transcript MGP_C57BL6NJ_T0033564.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113556865 113557893 + Cep95 protein_coding processed_transcript MGP_C57BL6NJ_T0033565.1 MGP_C57BL6NJ_G0019706.1 mouse_genomes_project 11 113556910 113558962 + MGP_C57BL6NJ_P0033565 Cep95 protein_coding protein_coding MGP_C57BL6NJ_T0102405.1 MGP_C57BL6NJ_G0040327.1 mouse_genomes_project 11 73992408 74031290 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102406.1 MGP_C57BL6NJ_G0040327.1 mouse_genomes_project 11 73992408 74035303 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0030185.1 MGP_C57BL6NJ_G0018870.1 mouse_genomes_project 11 68030563 68052616 + MGP_C57BL6NJ_P0030185 Zkscan6 protein_coding protein_coding MGP_C57BL6NJ_T0030186.1 MGP_C57BL6NJ_G0018870.1 mouse_genomes_project 11 68030632 68052617 + MGP_C57BL6NJ_P0030186 Zkscan6 protein_coding protein_coding MGP_C57BL6NJ_T0030123.1 MGP_C57BL6NJ_G0018853.1 mouse_genomes_project 11 64804103 64804502 + MGP_C57BL6NJ_P0030123 Gm10428 protein_coding protein_coding MGP_C57BL6NJ_T0003444.1 MGP_C57BL6NJ_G0003165.1 mouse_genomes_project 11 106208222 106220798 - Gm14206 antisense antisense MGP_C57BL6NJ_T0032437.1 MGP_C57BL6NJ_G0019419.1 mouse_genomes_project 11 102636841 102666030 - MGP_C57BL6NJ_P0032437 Kpnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032438.1 MGP_C57BL6NJ_G0019419.1 mouse_genomes_project 11 102639468 102641181 - Kpnb1 protein_coding retained_intron MGP_C57BL6NJ_T0032439.1 MGP_C57BL6NJ_G0019419.1 mouse_genomes_project 11 102641179 102642359 - Kpnb1 protein_coding retained_intron MGP_C57BL6NJ_T0032857.1 MGP_C57BL6NJ_G0019558.1 mouse_genomes_project 11 106694962 106718041 - MGP_C57BL6NJ_P0032857 Rab5c protein_coding protein_coding MGP_C57BL6NJ_T0032858.1 MGP_C57BL6NJ_G0019558.1 mouse_genomes_project 11 106694964 106718041 - MGP_C57BL6NJ_P0032858 Rab5c protein_coding protein_coding MGP_C57BL6NJ_T0032859.1 MGP_C57BL6NJ_G0019558.1 mouse_genomes_project 11 106698453 106710042 - MGP_C57BL6NJ_P0032859 Rab5c protein_coding protein_coding MGP_C57BL6NJ_T0032860.1 MGP_C57BL6NJ_G0019558.1 mouse_genomes_project 11 106699803 106718002 - MGP_C57BL6NJ_P0032860 Rab5c protein_coding protein_coding MGP_C57BL6NJ_T0033061.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107960059 107977594 - MGP_C57BL6NJ_P0033061 Etv4 protein_coding protein_coding MGP_C57BL6NJ_T0033062.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107960064 107977655 - MGP_C57BL6NJ_P0033062 Etv4 protein_coding protein_coding MGP_C57BL6NJ_T0033063.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107960064 107977655 - MGP_C57BL6NJ_P0033063 Etv4 protein_coding protein_coding MGP_C57BL6NJ_T0033064.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107960671 107964443 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033065.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107965953 107977145 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033066.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966092 107977542 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033067.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966123 107976775 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033068.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966342 107977506 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033069.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966429 107977544 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033070.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966429 107976650 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033071.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107966469 107977594 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033072.1 MGP_C57BL6NJ_G0019603.1 mouse_genomes_project 11 107976517 107977132 - Etv4 protein_coding processed_transcript MGP_C57BL6NJ_T0033320.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109532706 109560379 + MGP_C57BL6NJ_P0033320 Fmnl1 protein_coding protein_coding MGP_C57BL6NJ_T0033321.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109532912 109560373 + MGP_C57BL6NJ_P0033321 Fmnl1 protein_coding protein_coding MGP_C57BL6NJ_T0033322.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109532912 109560386 + MGP_C57BL6NJ_P0033322 Fmnl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033323.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109542346 109551881 + Fmnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0033324.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109546740 109552171 + Fmnl1 protein_coding processed_transcript MGP_C57BL6NJ_T0033325.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109553824 109560373 + Fmnl1 protein_coding retained_intron MGP_C57BL6NJ_T0033326.1 MGP_C57BL6NJ_G0019649.1 mouse_genomes_project 11 109558313 109559389 + MGP_C57BL6NJ_P0033326 Fmnl1 protein_coding protein_coding MGP_C57BL6NJ_T0034736.1 MGP_C57BL6NJ_G0019946.1 mouse_genomes_project 11 130298360 130298528 - MGP_C57BL6NJ_P0034736 Gm21060 protein_coding protein_coding MGP_C57BL6NJ_T0006548.1 MGP_C57BL6NJ_G0005453.1 mouse_genomes_project 11 129449217 129449623 + lincRNA lincRNA MGP_C57BL6NJ_T0101068.1 MGP_C57BL6NJ_G0039114.1 mouse_genomes_project 11 91736481 91743295 + snoRNA snoRNA MGP_C57BL6NJ_T0032725.1 MGP_C57BL6NJ_G0019503.1 mouse_genomes_project 11 105487625 105491925 - MGP_C57BL6NJ_P0032725 Krtap4-6 protein_coding protein_coding MGP_C57BL6NJ_T0030305.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71438658 71454580 - MGP_C57BL6NJ_P0030305 Arhgef15 protein_coding protein_coding MGP_C57BL6NJ_T0030306.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71438660 71456990 - MGP_C57BL6NJ_P0030306 Arhgef15 protein_coding protein_coding MGP_C57BL6NJ_T0030307.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71440030 71442884 - Arhgef15 protein_coding processed_transcript MGP_C57BL6NJ_T0030308.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71441804 71443269 - Arhgef15 protein_coding processed_transcript MGP_C57BL6NJ_T0030309.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71441950 71443109 - Arhgef15 protein_coding processed_transcript MGP_C57BL6NJ_T0030310.1 MGP_C57BL6NJ_G0018901.1 mouse_genomes_project 11 71445039 71451680 - Arhgef15 protein_coding retained_intron MGP_C57BL6NJ_T0032114.1 MGP_C57BL6NJ_G0019337.1 mouse_genomes_project 11 98877433 98906581 - Utp18 protein_coding processed_transcript MGP_C57BL6NJ_T0032115.1 MGP_C57BL6NJ_G0019337.1 mouse_genomes_project 11 98877433 98906581 - MGP_C57BL6NJ_P0032115 Utp18 protein_coding protein_coding MGP_C57BL6NJ_T0032116.1 MGP_C57BL6NJ_G0019337.1 mouse_genomes_project 11 98895258 98896019 - Utp18 protein_coding processed_transcript MGP_C57BL6NJ_T0102729.1 MGP_C57BL6NJ_G0040524.1 mouse_genomes_project 11 5345921 5347610 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032998.1 MGP_C57BL6NJ_G0019589.1 mouse_genomes_project 11 107540540 107560028 - MGP_C57BL6NJ_P0032998 Gm27029 protein_coding protein_coding MGP_C57BL6NJ_T0033000.1 MGP_C57BL6NJ_G0019589.1 mouse_genomes_project 11 107540715 107560305 - MGP_C57BL6NJ_P0033000 Gm27029 protein_coding protein_coding MGP_C57BL6NJ_T0033774.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122296109 122300766 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0033775.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122296109 122300803 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0033776.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122296109 122300790 - MGP_C57BL6NJ_P0033776 Btbd17 protein_coding protein_coding MGP_C57BL6NJ_T0033777.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122296998 122300838 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0033778.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122297177 122300792 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0033779.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122297324 122300766 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0033780.1 MGP_C57BL6NJ_G0019753.1 mouse_genomes_project 11 122297361 122300785 - Btbd17 protein_coding processed_transcript MGP_C57BL6NJ_T0031576.1 MGP_C57BL6NJ_G0019197.1 mouse_genomes_project 11 83716387 83774501 + MGP_C57BL6NJ_P0031576 Atad5 protein_coding protein_coding MGP_C57BL6NJ_T0031577.1 MGP_C57BL6NJ_G0019197.1 mouse_genomes_project 11 83716387 83774504 + MGP_C57BL6NJ_P0031577 Atad5 protein_coding protein_coding MGP_C57BL6NJ_T0031578.1 MGP_C57BL6NJ_G0019197.1 mouse_genomes_project 11 83729820 83774504 + Atad5 protein_coding processed_transcript MGP_C57BL6NJ_T0031579.1 MGP_C57BL6NJ_G0019197.1 mouse_genomes_project 11 83730939 83737159 + Atad5 protein_coding retained_intron MGP_C57BL6NJ_T0029508.1 MGP_C57BL6NJ_G0018693.1 mouse_genomes_project 11 54628981 54634192 - MGP_C57BL6NJ_P0029508 Il13 protein_coding protein_coding MGP_C57BL6NJ_T0009931.1 MGP_C57BL6NJ_G0008016.1 mouse_genomes_project 11 102285778 102285851 + Mir152 miRNA miRNA MGP_C57BL6NJ_T0012888.1 MGP_C57BL6NJ_G0010933.1 mouse_genomes_project 11 47195624 47195969 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031955.1 MGP_C57BL6NJ_G0019297.1 mouse_genomes_project 11 91894730 91897328 + MGP_C57BL6NJ_P0031955 Gm11492 protein_coding protein_coding MGP_C57BL6NJ_T0006546.1 MGP_C57BL6NJ_G0005451.1 mouse_genomes_project 11 128897589 128898947 + Gm17586 lincRNA lincRNA MGP_C57BL6NJ_T0030519.1 MGP_C57BL6NJ_G0018948.1 mouse_genomes_project 11 72420485 72422385 - MGP_C57BL6NJ_P0030519 4933402P03Rik protein_coding protein_coding MGP_C57BL6NJ_T0031678.1 MGP_C57BL6NJ_G0019225.1 mouse_genomes_project 11 86696594 86707960 + MGP_C57BL6NJ_P0031678 Fndc8 protein_coding protein_coding MGP_C57BL6NJ_T0009858.1 MGP_C57BL6NJ_G0007943.1 mouse_genomes_project 11 32270109 32270193 - Gm26052 miRNA miRNA MGP_C57BL6NJ_T0029239.1 MGP_C57BL6NJ_G0018622.1 mouse_genomes_project 11 50078447 50085634 + MGP_C57BL6NJ_P0029239 Olfr1383 protein_coding protein_coding MGP_C57BL6NJ_T0028716.1 MGP_C57BL6NJ_G0018481.1 mouse_genomes_project 11 22140408 22145519 - MGP_C57BL6NJ_P0028716 1700093K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0028717.1 MGP_C57BL6NJ_G0018481.1 mouse_genomes_project 11 22140408 22144800 - MGP_C57BL6NJ_P0028717 1700093K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0028718.1 MGP_C57BL6NJ_G0018481.1 mouse_genomes_project 11 22144364 22145519 - MGP_C57BL6NJ_P0028718 1700093K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0028719.1 MGP_C57BL6NJ_G0018481.1 mouse_genomes_project 11 22144393 22146732 - MGP_C57BL6NJ_P0028719 1700093K21Rik protein_coding protein_coding MGP_C57BL6NJ_T0012765.1 MGP_C57BL6NJ_G0010810.1 mouse_genomes_project 11 3676125 3676514 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031786.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88120418 88225974 + MGP_C57BL6NJ_P0031786 protein_coding protein_coding MGP_C57BL6NJ_T0031787.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88120446 88123858 + protein_coding processed_transcript MGP_C57BL6NJ_T0031789.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88180683 88425790 + MGP_C57BL6NJ_P0031789 protein_coding protein_coding MGP_C57BL6NJ_T0031790.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88180915 88248876 + protein_coding retained_intron MGP_C57BL6NJ_T0031791.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88188308 88244883 + MGP_C57BL6NJ_P0031791 protein_coding protein_coding MGP_C57BL6NJ_T0031792.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88188308 88225879 + MGP_C57BL6NJ_P0031792 protein_coding protein_coding MGP_C57BL6NJ_T0031793.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88188335 88225868 + MGP_C57BL6NJ_P0031793 protein_coding protein_coding MGP_C57BL6NJ_T0031794.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88206795 88425784 + MGP_C57BL6NJ_P0031794 protein_coding protein_coding MGP_C57BL6NJ_T0031795.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88206821 88425793 + MGP_C57BL6NJ_P0031795 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031796.1 MGP_C57BL6NJ_G0019259.1 mouse_genomes_project 11 88294231 88327608 + MGP_C57BL6NJ_P0031796 protein_coding protein_coding MGP_C57BL6NJ_T0030926.1 MGP_C57BL6NJ_G0019030.1 mouse_genomes_project 11 75278115 75280673 + MGP_C57BL6NJ_P0030926 Ggt6 protein_coding protein_coding MGP_C57BL6NJ_T0030927.1 MGP_C57BL6NJ_G0019030.1 mouse_genomes_project 11 75278120 75280671 + MGP_C57BL6NJ_P0030927 Ggt6 protein_coding protein_coding MGP_C57BL6NJ_T0032326.1 MGP_C57BL6NJ_G0019388.1 mouse_genomes_project 11 101377006 101399353 + MGP_C57BL6NJ_P0032326 Snf8 protein_coding protein_coding MGP_C57BL6NJ_T0032327.1 MGP_C57BL6NJ_G0019388.1 mouse_genomes_project 11 101377077 101395584 + Snf8 protein_coding processed_transcript MGP_C57BL6NJ_T0032328.1 MGP_C57BL6NJ_G0019388.1 mouse_genomes_project 11 101377086 101399353 + MGP_C57BL6NJ_P0032328 Snf8 protein_coding protein_coding MGP_C57BL6NJ_T0032329.1 MGP_C57BL6NJ_G0019388.1 mouse_genomes_project 11 101396612 101399353 + Snf8 protein_coding processed_transcript MGP_C57BL6NJ_T0032330.1 MGP_C57BL6NJ_G0019388.1 mouse_genomes_project 11 101396746 101399242 + Snf8 protein_coding processed_transcript MGP_C57BL6NJ_T0030124.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64804380 64844047 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0030125.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64833455 64844529 - MGP_C57BL6NJ_P0030125 Zfp286 protein_coding protein_coding MGP_C57BL6NJ_T0030126.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64834673 64844490 - MGP_C57BL6NJ_P0030126 Zfp286 protein_coding protein_coding MGP_C57BL6NJ_T0030127.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64835798 64844484 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0030128.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64835807 64839218 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0030129.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64838582 64844476 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0030130.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64838582 64844453 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0030131.1 MGP_C57BL6NJ_G0018854.1 mouse_genomes_project 11 64842641 64844490 - Zfp286 protein_coding processed_transcript MGP_C57BL6NJ_T0011563.1 MGP_C57BL6NJ_G0009648.1 mouse_genomes_project 11 75166319 75166590 + Gm23224 misc_RNA misc_RNA MGP_C57BL6NJ_T0029860.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61964706 61988571 - MGP_C57BL6NJ_P0029860 Srebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029861.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61965539 61977200 - MGP_C57BL6NJ_P0029861 Srebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029862.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61965747 61966658 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029863.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61966080 61977272 - MGP_C57BL6NJ_P0029863 Srebf1 protein_coding protein_coding MGP_C57BL6NJ_T0029864.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61966981 61967833 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029865.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61966983 61968242 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029866.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61967418 61969475 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029867.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61968276 61969106 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029868.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61968718 61969908 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029869.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61969806 61972919 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029870.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61972765 61977199 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029871.1 MGP_C57BL6NJ_G0018805.1 mouse_genomes_project 11 61973756 61990548 - Srebf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029690.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59796141 59804374 - MGP_C57BL6NJ_P0029690 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0029691.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59796151 59804351 - MGP_C57BL6NJ_P0029691 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0029692.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59796243 59804141 - MGP_C57BL6NJ_P0029692 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0029693.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59798252 59811359 - MGP_C57BL6NJ_P0029693 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0029694.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59798354 59800982 - MGP_C57BL6NJ_P0029694 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0029695.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59800731 59804342 - Zfp672 protein_coding processed_transcript MGP_C57BL6NJ_T0029696.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59800765 59804342 - Zfp672 protein_coding processed_transcript MGP_C57BL6NJ_T0029697.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59808242 59811367 - Zfp672 protein_coding retained_intron MGP_C57BL6NJ_T0029698.1 MGP_C57BL6NJ_G0018741.1 mouse_genomes_project 11 59808748 59811367 - MGP_C57BL6NJ_P0029698 Zfp672 protein_coding protein_coding MGP_C57BL6NJ_T0102738.1 MGP_C57BL6NJ_G0040533.1 mouse_genomes_project 11 59990703 59991643 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030064.1 MGP_C57BL6NJ_G0018843.1 mouse_genomes_project 11 64253037 64268029 - MGP_C57BL6NJ_P0030064 Zswim7 protein_coding protein_coding MGP_C57BL6NJ_T0032520.1 MGP_C57BL6NJ_G0019437.1 mouse_genomes_project 11 103408122 103410386 + MGP_C57BL6NJ_P0032520 B230217C12Rik protein_coding protein_coding MGP_C57BL6NJ_T0032521.1 MGP_C57BL6NJ_G0019437.1 mouse_genomes_project 11 103408635 103411442 + B230217C12Rik protein_coding lincRNA MGP_C57BL6NJ_T0032522.1 MGP_C57BL6NJ_G0019437.1 mouse_genomes_project 11 103408657 103411152 + B230217C12Rik protein_coding processed_transcript MGP_C57BL6NJ_T0032523.1 MGP_C57BL6NJ_G0019437.1 mouse_genomes_project 11 103408661 103410386 + B230217C12Rik protein_coding processed_transcript MGP_C57BL6NJ_T0032651.1 MGP_C57BL6NJ_G0019468.1 mouse_genomes_project 11 104549410 104567977 + MGP_C57BL6NJ_P0032651 Rapgefl1 protein_coding protein_coding MGP_C57BL6NJ_T0032652.1 MGP_C57BL6NJ_G0019468.1 mouse_genomes_project 11 104557701 104559971 + Rapgefl1 protein_coding retained_intron MGP_C57BL6NJ_T0032653.1 MGP_C57BL6NJ_G0019468.1 mouse_genomes_project 11 104564621 104567279 + Rapgefl1 protein_coding retained_intron MGP_C57BL6NJ_T0102766.1 MGP_C57BL6NJ_G0040561.1 mouse_genomes_project 11 105748309 105748512 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0031007.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76241173 76260565 - MGP_C57BL6NJ_P0031007 Aspa protein_coding protein_coding MGP_C57BL6NJ_T0031008.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76241173 76265509 - MGP_C57BL6NJ_P0031008 Aspa protein_coding protein_coding MGP_C57BL6NJ_T0031009.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76249730 76262408 - MGP_C57BL6NJ_P0031009 Aspa protein_coding protein_coding MGP_C57BL6NJ_T0031010.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76251927 76260268 - Aspa protein_coding retained_intron MGP_C57BL6NJ_T0031011.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76255759 76262738 - MGP_C57BL6NJ_P0031011 Aspa protein_coding protein_coding MGP_C57BL6NJ_T0031012.1 MGP_C57BL6NJ_G0019051.1 mouse_genomes_project 11 76258144 76260545 - MGP_C57BL6NJ_P0031012 Aspa protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032618.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104393625 104419743 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0032619.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104393625 104420344 - MGP_C57BL6NJ_P0032619 Med24 protein_coding protein_coding MGP_C57BL6NJ_T0032620.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104393877 104395515 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0032621.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104393934 104420319 - MGP_C57BL6NJ_P0032621 Med24 protein_coding protein_coding MGP_C57BL6NJ_T0032622.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104393934 104420276 - MGP_C57BL6NJ_P0032622 Med24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032623.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104395461 104396286 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0032624.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104396300 104397038 - Med24 protein_coding processed_transcript MGP_C57BL6NJ_T0032625.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104397876 104420327 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0032626.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104398680 104400101 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0032627.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104408821 104409722 - Med24 protein_coding processed_transcript MGP_C57BL6NJ_T0032628.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104409462 104420283 - MGP_C57BL6NJ_P0032628 Med24 protein_coding protein_coding MGP_C57BL6NJ_T0032629.1 MGP_C57BL6NJ_G0019463.1 mouse_genomes_project 11 104409549 104420312 - Med24 protein_coding retained_intron MGP_C57BL6NJ_T0029789.1 MGP_C57BL6NJ_G0018787.1 mouse_genomes_project 11 61005645 61034393 + MGP_C57BL6NJ_P0029789 Wnt9a protein_coding protein_coding MGP_C57BL6NJ_T0029790.1 MGP_C57BL6NJ_G0018787.1 mouse_genomes_project 11 61005647 61034393 + MGP_C57BL6NJ_P0029790 Wnt9a protein_coding protein_coding MGP_C57BL6NJ_T0009851.1 MGP_C57BL6NJ_G0007936.1 mouse_genomes_project 11 22680221 22680326 + Gm44381 miRNA miRNA MGP_C57BL6NJ_T0031256.1 MGP_C57BL6NJ_G0019125.1 mouse_genomes_project 11 79664349 79675780 + MGP_C57BL6NJ_P0031256 Timm22 protein_coding protein_coding MGP_C57BL6NJ_T0031257.1 MGP_C57BL6NJ_G0019125.1 mouse_genomes_project 11 79664540 79677743 + MGP_C57BL6NJ_P0031257 Timm22 protein_coding protein_coding MGP_C57BL6NJ_T0031258.1 MGP_C57BL6NJ_G0019125.1 mouse_genomes_project 11 79664588 79675533 + MGP_C57BL6NJ_P0031258 Timm22 protein_coding protein_coding MGP_C57BL6NJ_T0031259.1 MGP_C57BL6NJ_G0019125.1 mouse_genomes_project 11 79664602 79668094 + MGP_C57BL6NJ_P0031259 Timm22 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033572.1 MGP_C57BL6NJ_G0019708.1 mouse_genomes_project 11 113746937 113763712 - MGP_C57BL6NJ_P0033572 protein_coding protein_coding MGP_C57BL6NJ_T0033573.1 MGP_C57BL6NJ_G0019708.1 mouse_genomes_project 11 113747148 113750273 - MGP_C57BL6NJ_P0033573 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033574.1 MGP_C57BL6NJ_G0019708.1 mouse_genomes_project 11 113759275 113763540 - MGP_C57BL6NJ_P0033574 protein_coding protein_coding MGP_C57BL6NJ_T0033806.1 MGP_C57BL6NJ_G0019764.1 mouse_genomes_project 11 122723272 122785712 + Rab37 protein_coding retained_intron MGP_C57BL6NJ_T0033807.1 MGP_C57BL6NJ_G0019764.1 mouse_genomes_project 11 122723272 122800687 + MGP_C57BL6NJ_P0033807 Rab37 protein_coding protein_coding MGP_C57BL6NJ_T0033815.1 MGP_C57BL6NJ_G0019764.1 mouse_genomes_project 11 122792607 122800687 + MGP_C57BL6NJ_P0033815 Rab37 protein_coding protein_coding MGP_C57BL6NJ_T0033816.1 MGP_C57BL6NJ_G0019764.1 mouse_genomes_project 11 122792653 122796000 + Rab37 protein_coding retained_intron MGP_C57BL6NJ_T0009946.1 MGP_C57BL6NJ_G0008031.1 mouse_genomes_project 11 107554695 107554762 - Mir6929 miRNA miRNA MGP_C57BL6NJ_T0006417.1 MGP_C57BL6NJ_G0005357.1 mouse_genomes_project 11 65246394 65262211 + B430319H21Rik lincRNA lincRNA MGP_C57BL6NJ_T0030982.1 MGP_C57BL6NJ_G0019042.1 mouse_genomes_project 11 75991726 76048301 + MGP_C57BL6NJ_P0030982 Itgae protein_coding protein_coding MGP_C57BL6NJ_T0030983.1 MGP_C57BL6NJ_G0019042.1 mouse_genomes_project 11 75991726 76074245 + MGP_C57BL6NJ_P0030983 Itgae protein_coding protein_coding MGP_C57BL6NJ_T0032370.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102197635 102207612 - MGP_C57BL6NJ_P0032370 Snx11 protein_coding protein_coding MGP_C57BL6NJ_T0032371.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102197957 102207640 - MGP_C57BL6NJ_P0032371 Snx11 protein_coding protein_coding MGP_C57BL6NJ_T0032372.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102199971 102207573 - MGP_C57BL6NJ_P0032372 Snx11 protein_coding protein_coding MGP_C57BL6NJ_T0032373.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102200178 102201131 - Snx11 protein_coding processed_transcript MGP_C57BL6NJ_T0032374.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102202617 102204722 - Snx11 protein_coding processed_transcript MGP_C57BL6NJ_T0032375.1 MGP_C57BL6NJ_G0019404.1 mouse_genomes_project 11 102206380 102207601 - Snx11 protein_coding processed_transcript MGP_C57BL6NJ_T0003461.1 MGP_C57BL6NJ_G0003182.1 mouse_genomes_project 11 111049551 111050540 - Gm11665 antisense antisense MGP_C57BL6NJ_T0003286.1 MGP_C57BL6NJ_G0003037.1 mouse_genomes_project 11 27295676 27299654 + Gm12081 antisense antisense MGP_C57BL6NJ_T0034338.1 MGP_C57BL6NJ_G0019865.1 mouse_genomes_project 11 127149301 127154923 - MGP_C57BL6NJ_P0034338 Cbx8 protein_coding protein_coding MGP_C57BL6NJ_T0034339.1 MGP_C57BL6NJ_G0019865.1 mouse_genomes_project 11 127153006 127154785 - Cbx8 protein_coding processed_transcript MGP_C57BL6NJ_T0034340.1 MGP_C57BL6NJ_G0019865.1 mouse_genomes_project 11 127153137 127154865 - Cbx8 protein_coding processed_transcript MGP_C57BL6NJ_T0031845.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89079785 89245926 - MGP_C57BL6NJ_P0031845 protein_coding protein_coding MGP_C57BL6NJ_T0031846.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89080990 89128032 - MGP_C57BL6NJ_P0031846 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031847.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89081613 89084266 - MGP_C57BL6NJ_P0031847 protein_coding protein_coding MGP_C57BL6NJ_T0031848.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89126060 89140109 - MGP_C57BL6NJ_P0031848 protein_coding protein_coding MGP_C57BL6NJ_T0031849.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89135345 89142723 - MGP_C57BL6NJ_P0031849 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031850.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89148561 89151754 - protein_coding retained_intron MGP_C57BL6NJ_T0031851.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89176627 89246049 - protein_coding processed_transcript MGP_C57BL6NJ_T0031852.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89199901 89245856 - protein_coding processed_transcript MGP_C57BL6NJ_T0031853.1 MGP_C57BL6NJ_G0019270.1 mouse_genomes_project 11 89203424 89245817 - protein_coding retained_intron MGP_C57BL6NJ_T0029780.1 MGP_C57BL6NJ_G0018783.1 mouse_genomes_project 11 60892980 60896367 + MGP_C57BL6NJ_P0029780 Mrpl55 protein_coding protein_coding MGP_C57BL6NJ_T0029781.1 MGP_C57BL6NJ_G0018783.1 mouse_genomes_project 11 60892983 60896328 + MGP_C57BL6NJ_P0029781 Mrpl55 protein_coding protein_coding MGP_C57BL6NJ_T0029782.1 MGP_C57BL6NJ_G0018783.1 mouse_genomes_project 11 60892986 60896574 + MGP_C57BL6NJ_P0029782 Mrpl55 protein_coding protein_coding MGP_C57BL6NJ_T0029783.1 MGP_C57BL6NJ_G0018783.1 mouse_genomes_project 11 60892999 60896442 + MGP_C57BL6NJ_P0029783 Mrpl55 protein_coding protein_coding MGP_C57BL6NJ_T0029784.1 MGP_C57BL6NJ_G0018783.1 mouse_genomes_project 11 60893032 60896328 + MGP_C57BL6NJ_P0029784 Mrpl55 protein_coding protein_coding MGP_C57BL6NJ_T0028431.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3606090 3624797 + MGP_C57BL6NJ_P0028431 Zmiz2 protein_coding protein_coding MGP_C57BL6NJ_T0028432.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3606380 3624797 + MGP_C57BL6NJ_P0028432 Zmiz2 protein_coding protein_coding MGP_C57BL6NJ_T0028433.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3606487 3624797 + MGP_C57BL6NJ_P0028433 Zmiz2 protein_coding protein_coding MGP_C57BL6NJ_T0028434.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3613826 3624713 + MGP_C57BL6NJ_P0028434 Zmiz2 protein_coding protein_coding MGP_C57BL6NJ_T0028435.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3614243 3624569 + MGP_C57BL6NJ_P0028435 Zmiz2 protein_coding protein_coding MGP_C57BL6NJ_T0028436.1 MGP_C57BL6NJ_G0018414.1 mouse_genomes_project 11 3615367 3616487 + Zmiz2 protein_coding retained_intron MGP_C57BL6NJ_T0012904.1 MGP_C57BL6NJ_G0010949.1 mouse_genomes_project 11 53301097 53301260 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098958.1 MGP_C57BL6NJ_G0037022.1 mouse_genomes_project 11 22252856 22252973 - Gm23114 rRNA rRNA MGP_C57BL6NJ_T0099765.1 MGP_C57BL6NJ_G0037811.1 mouse_genomes_project 11 74814539 74814642 + Gm23226 snRNA snRNA MGP_C57BL6NJ_T0012931.1 MGP_C57BL6NJ_G0010976.1 mouse_genomes_project 11 61304575 61306888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032239.1 MGP_C57BL6NJ_G0019364.1 mouse_genomes_project 11 100211304 100224837 - MGP_C57BL6NJ_P0032239 Sgca protein_coding protein_coding MGP_C57BL6NJ_T0032240.1 MGP_C57BL6NJ_G0019364.1 mouse_genomes_project 11 100211310 100219186 - MGP_C57BL6NJ_P0032240 Sgca protein_coding protein_coding MGP_C57BL6NJ_T0032241.1 MGP_C57BL6NJ_G0019364.1 mouse_genomes_project 11 100211335 100221973 - MGP_C57BL6NJ_P0032241 Sgca protein_coding protein_coding MGP_C57BL6NJ_T0032242.1 MGP_C57BL6NJ_G0019364.1 mouse_genomes_project 11 100211721 100224837 - MGP_C57BL6NJ_P0032242 Sgca protein_coding protein_coding MGP_C57BL6NJ_T0032244.1 MGP_C57BL6NJ_G0019364.1 mouse_genomes_project 11 100220735 100221999 - MGP_C57BL6NJ_P0032244 Sgca protein_coding protein_coding MGP_C57BL6NJ_T0034730.1 MGP_C57BL6NJ_G0019943.1 mouse_genomes_project 11 129991685 130051928 - MGP_C57BL6NJ_P0034730 B3gntl1 protein_coding protein_coding MGP_C57BL6NJ_T0034731.1 MGP_C57BL6NJ_G0019943.1 mouse_genomes_project 11 130002756 130051928 - MGP_C57BL6NJ_P0034731 B3gntl1 protein_coding protein_coding MGP_C57BL6NJ_T0009904.1 MGP_C57BL6NJ_G0007989.1 mouse_genomes_project 11 77956538 77956606 - Mir6926 miRNA miRNA MGP_C57BL6NJ_T0033474.1 MGP_C57BL6NJ_G0019687.1 mouse_genomes_project 11 112793504 112793813 + MGP_C57BL6NJ_P0033474 Gm10840 protein_coding protein_coding MGP_C57BL6NJ_T0033433.1 MGP_C57BL6NJ_G0019676.1 mouse_genomes_project 11 111888155 111927800 + Mrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0033434.1 MGP_C57BL6NJ_G0019676.1 mouse_genomes_project 11 111888158 111953301 + MGP_C57BL6NJ_P0033434 Mrc2 protein_coding protein_coding MGP_C57BL6NJ_T0033435.1 MGP_C57BL6NJ_G0019676.1 mouse_genomes_project 11 111888180 111946036 + MGP_C57BL6NJ_P0033435 Mrc2 protein_coding protein_coding MGP_C57BL6NJ_T0033436.1 MGP_C57BL6NJ_G0019676.1 mouse_genomes_project 11 111929960 111933208 + Mrc2 protein_coding processed_transcript MGP_C57BL6NJ_T0033437.1 MGP_C57BL6NJ_G0019676.1 mouse_genomes_project 11 111942992 111945305 + Mrc2 protein_coding retained_intron MGP_C57BL6NJ_T0033113.1 MGP_C57BL6NJ_G0019614.1 mouse_genomes_project 11 108375389 108379248 - MGP_C57BL6NJ_P0033113 Tmem101 protein_coding protein_coding MGP_C57BL6NJ_T0033114.1 MGP_C57BL6NJ_G0019614.1 mouse_genomes_project 11 108377017 108379191 - Tmem101 protein_coding processed_transcript MGP_C57BL6NJ_T0033115.1 MGP_C57BL6NJ_G0019614.1 mouse_genomes_project 11 108378658 108379199 - Tmem101 protein_coding processed_transcript MGP_C57BL6NJ_T0032129.1 MGP_C57BL6NJ_G0019339.1 mouse_genomes_project 11 98975488 98981870 - MGP_C57BL6NJ_P0032129 Nme2 protein_coding protein_coding MGP_C57BL6NJ_T0032130.1 MGP_C57BL6NJ_G0019339.1 mouse_genomes_project 11 98975491 98981394 - MGP_C57BL6NJ_P0032130 Nme2 protein_coding protein_coding MGP_C57BL6NJ_T0029652.1 MGP_C57BL6NJ_G0018728.1 mouse_genomes_project 11 58838940 58877751 - MGP_C57BL6NJ_P0029652 Fam114a2 protein_coding protein_coding MGP_C57BL6NJ_T0029653.1 MGP_C57BL6NJ_G0018728.1 mouse_genomes_project 11 58839739 58877737 - MGP_C57BL6NJ_P0029653 Fam114a2 protein_coding protein_coding MGP_C57BL6NJ_T0029654.1 MGP_C57BL6NJ_G0018728.1 mouse_genomes_project 11 58839965 58877727 - MGP_C57BL6NJ_P0029654 Fam114a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029655.1 MGP_C57BL6NJ_G0018728.1 mouse_genomes_project 11 58864515 58866570 - Fam114a2 protein_coding processed_transcript MGP_C57BL6NJ_T0029656.1 MGP_C57BL6NJ_G0018728.1 mouse_genomes_project 11 58866516 58877736 - Fam114a2 protein_coding processed_transcript MGP_C57BL6NJ_T0030212.1 MGP_C57BL6NJ_G0018878.1 mouse_genomes_project 11 69498163 69525711 + MGP_C57BL6NJ_P0030212 Myh2 protein_coding protein_coding MGP_C57BL6NJ_T0030213.1 MGP_C57BL6NJ_G0018878.1 mouse_genomes_project 11 69498202 69501759 + Myh2 protein_coding retained_intron MGP_C57BL6NJ_T0030214.1 MGP_C57BL6NJ_G0018878.1 mouse_genomes_project 11 69498356 69525708 + MGP_C57BL6NJ_P0030214 Myh2 protein_coding protein_coding MGP_C57BL6NJ_T0028389.1 MGP_C57BL6NJ_G0018404.1 mouse_genomes_project 11 3066788 3068934 - MGP_C57BL6NJ_P0028389 Myl7 protein_coding protein_coding MGP_C57BL6NJ_T0003505.1 MGP_C57BL6NJ_G0003216.1 mouse_genomes_project 11 125887251 125904826 + Gm11725 antisense antisense MGP_C57BL6NJ_T0028244.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1199562 1227449 + Tbc1d10a protein_coding processed_transcript MGP_C57BL6NJ_T0028245.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1199562 1228069 + MGP_C57BL6NJ_P0028245 Tbc1d10a protein_coding protein_coding MGP_C57BL6NJ_T0028246.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1199595 1228066 + MGP_C57BL6NJ_P0028246 Tbc1d10a protein_coding protein_coding MGP_C57BL6NJ_T0028247.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1217986 1222554 + Tbc1d10a protein_coding processed_transcript MGP_C57BL6NJ_T0028248.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1224874 1226164 + Tbc1d10a protein_coding processed_transcript MGP_C57BL6NJ_T0028249.1 MGP_C57BL6NJ_G0018372.1 mouse_genomes_project 11 1225038 1226420 + Tbc1d10a protein_coding processed_transcript MGP_C57BL6NJ_T0031131.1 MGP_C57BL6NJ_G0019099.1 mouse_genomes_project 11 78414837 78465739 - MGP_C57BL6NJ_P0031131 Rpa1 protein_coding protein_coding MGP_C57BL6NJ_T0031132.1 MGP_C57BL6NJ_G0019099.1 mouse_genomes_project 11 78417021 78465725 - MGP_C57BL6NJ_P0031132 Rpa1 protein_coding protein_coding MGP_C57BL6NJ_T0031133.1 MGP_C57BL6NJ_G0019099.1 mouse_genomes_project 11 78417976 78459665 - Rpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0031134.1 MGP_C57BL6NJ_G0019099.1 mouse_genomes_project 11 78432711 78465710 - Rpa1 protein_coding retained_intron MGP_C57BL6NJ_T0031135.1 MGP_C57BL6NJ_G0019099.1 mouse_genomes_project 11 78459454 78465708 - Rpa1 protein_coding processed_transcript MGP_C57BL6NJ_T0031044.1 MGP_C57BL6NJ_G0019072.1 mouse_genomes_project 11 76996461 77008466 - MGP_C57BL6NJ_P0031044 Olfr398 protein_coding protein_coding MGP_C57BL6NJ_T0031045.1 MGP_C57BL6NJ_G0019072.1 mouse_genomes_project 11 76996461 76997406 - MGP_C57BL6NJ_P0031045 Olfr398 protein_coding protein_coding MGP_C57BL6NJ_T0017643.1 MGP_C57BL6NJ_G0015557.1 mouse_genomes_project 11 29813388 29818704 + Gm12100 processed_transcript processed_transcript MGP_C57BL6NJ_T0029233.1 MGP_C57BL6NJ_G0018616.1 mouse_genomes_project 11 49863622 49864558 + MGP_C57BL6NJ_P0029233 Olfr1391 protein_coding protein_coding MGP_C57BL6NJ_T0032531.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103585376 103608062 - MGP_C57BL6NJ_P0032531 Cacnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032532.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103586769 103608055 - MGP_C57BL6NJ_P0032532 Cacnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032533.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103590206 103603802 - MGP_C57BL6NJ_P0032533 Cacnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032534.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103590384 103608062 - MGP_C57BL6NJ_P0032534 Cacnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032535.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103590384 103608062 - MGP_C57BL6NJ_P0032535 Cacnb1 protein_coding protein_coding MGP_C57BL6NJ_T0032536.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103595084 103608462 - Cacnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0032537.1 MGP_C57BL6NJ_G0019441.1 mouse_genomes_project 11 103595119 103598011 - Cacnb1 protein_coding processed_transcript MGP_C57BL6NJ_T0033748.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121144817 121452820 - MGP_C57BL6NJ_P0033748 Sdk2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033749.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121144818 121453160 - MGP_C57BL6NJ_P0033749 Sdk2 protein_coding protein_coding MGP_C57BL6NJ_T0033750.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121161849 121179865 - Sdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0033751.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121175836 121197054 - Sdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0033752.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121226957 121452917 - MGP_C57BL6NJ_P0033752 Sdk2 protein_coding protein_coding MGP_C57BL6NJ_T0033753.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121245259 121453988 - Sdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0033754.1 MGP_C57BL6NJ_G0019748.1 mouse_genomes_project 11 121320792 121453971 - Sdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0032053.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93317979 93342876 - MGP_C57BL6NJ_P0032053 Akap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032054.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93317979 93342876 - MGP_C57BL6NJ_P0032054 Akap1 protein_coding protein_coding MGP_C57BL6NJ_T0032055.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93317979 93358073 - MGP_C57BL6NJ_P0032055 Akap1 protein_coding protein_coding MGP_C57BL6NJ_T0032056.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93318942 93357204 - MGP_C57BL6NJ_P0032056 Akap1 protein_coding protein_coding MGP_C57BL6NJ_T0032057.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93326584 93331113 - Akap1 protein_coding retained_intron MGP_C57BL6NJ_T0032058.1 MGP_C57BL6NJ_G0019318.1 mouse_genomes_project 11 93328544 93335895 - MGP_C57BL6NJ_P0032058 Akap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032587.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104080591 104086029 + MGP_C57BL6NJ_P0032587 Grb7 protein_coding protein_coding MGP_C57BL6NJ_T0032588.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104081031 104089985 + MGP_C57BL6NJ_P0032588 Grb7 protein_coding protein_coding MGP_C57BL6NJ_T0032589.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104081245 104089985 + Grb7 protein_coding retained_intron MGP_C57BL6NJ_T0032590.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104081265 104089985 + Grb7 protein_coding retained_intron MGP_C57BL6NJ_T0032591.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104086453 104088434 + Grb7 protein_coding retained_intron MGP_C57BL6NJ_T0032592.1 MGP_C57BL6NJ_G0019455.1 mouse_genomes_project 11 104088400 104089737 + Grb7 protein_coding retained_intron MGP_C57BL6NJ_T0101075.1 MGP_C57BL6NJ_G0039121.1 mouse_genomes_project 11 101374776 101374991 + Gm24949 snoRNA snoRNA MGP_C57BL6NJ_T0011551.1 MGP_C57BL6NJ_G0009636.1 mouse_genomes_project 11 608747 608983 - Gm27517 misc_RNA misc_RNA MGP_C57BL6NJ_T0017676.1 MGP_C57BL6NJ_G0015576.1 mouse_genomes_project 11 75088514 75090669 + 1700051A21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017677.1 MGP_C57BL6NJ_G0015576.1 mouse_genomes_project 11 75088937 75090651 + 1700051A21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0006509.1 MGP_C57BL6NJ_G0005422.1 mouse_genomes_project 11 116612697 116639434 + Gm11685 lincRNA lincRNA MGP_C57BL6NJ_T0013090.1 MGP_C57BL6NJ_G0011135.1 mouse_genomes_project 11 127836624 127837069 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032499.1 MGP_C57BL6NJ_G0019434.1 mouse_genomes_project 11 103331707 103335968 - MGP_C57BL6NJ_P0032499 1700001P01Rik protein_coding protein_coding MGP_C57BL6NJ_T0031192.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78829043 78859264 + MGP_C57BL6NJ_P0031192 Myo1c protein_coding protein_coding MGP_C57BL6NJ_T0031193.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78836569 78854941 + Myo1c protein_coding retained_intron MGP_C57BL6NJ_T0031194.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78836604 78859268 + MGP_C57BL6NJ_P0031194 Myo1c protein_coding protein_coding MGP_C57BL6NJ_T0031195.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78836618 78838069 + MGP_C57BL6NJ_P0031195 Myo1c protein_coding protein_coding MGP_C57BL6NJ_T0031196.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78842153 78848673 + Myo1c protein_coding retained_intron MGP_C57BL6NJ_T0031197.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78848155 78854596 + Myo1c protein_coding retained_intron MGP_C57BL6NJ_T0031198.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78853447 78855608 + Myo1c protein_coding retained_intron MGP_C57BL6NJ_T0031199.1 MGP_C57BL6NJ_G0019111.1 mouse_genomes_project 11 78855629 78857081 + Myo1c protein_coding retained_intron MGP_C57BL6NJ_T0031781.1 MGP_C57BL6NJ_G0019258.1 mouse_genomes_project 11 88068347 88120347 - MGP_C57BL6NJ_P0031781 Tada2a protein_coding protein_coding MGP_C57BL6NJ_T0031782.1 MGP_C57BL6NJ_G0019258.1 mouse_genomes_project 11 88068958 88072384 - Tada2a protein_coding processed_transcript MGP_C57BL6NJ_T0031783.1 MGP_C57BL6NJ_G0019258.1 mouse_genomes_project 11 88069063 88083231 - MGP_C57BL6NJ_P0031783 Tada2a protein_coding protein_coding MGP_C57BL6NJ_T0031784.1 MGP_C57BL6NJ_G0019258.1 mouse_genomes_project 11 88071465 88076895 - Tada2a protein_coding processed_transcript MGP_C57BL6NJ_T0031785.1 MGP_C57BL6NJ_G0019258.1 mouse_genomes_project 11 88074860 88076947 - Tada2a protein_coding processed_transcript MGP_C57BL6NJ_T0031741.1 MGP_C57BL6NJ_G0019243.1 mouse_genomes_project 11 87439541 87449982 - MGP_C57BL6NJ_P0031741 Heatr9 protein_coding protein_coding MGP_C57BL6NJ_T0009963.1 MGP_C57BL6NJ_G0008048.1 mouse_genomes_project 11 125001526 125001603 + Gm24323 miRNA miRNA MGP_C57BL6NJ_T0006435.1 MGP_C57BL6NJ_G0005371.1 mouse_genomes_project 11 74492338 74494373 - Gm12325 lincRNA lincRNA MGP_C57BL6NJ_T0031897.1 MGP_C57BL6NJ_G0019281.1 mouse_genomes_project 11 90710007 90724377 + MGP_C57BL6NJ_P0031897 Rnft1 protein_coding protein_coding MGP_C57BL6NJ_T0031898.1 MGP_C57BL6NJ_G0019281.1 mouse_genomes_project 11 90710035 90715830 + Rnft1 protein_coding processed_transcript MGP_C57BL6NJ_T0031899.1 MGP_C57BL6NJ_G0019281.1 mouse_genomes_project 11 90710080 90711456 + Rnft1 protein_coding processed_transcript MGP_C57BL6NJ_T0033485.1 MGP_C57BL6NJ_G0019690.1 mouse_genomes_project 11 112855918 112888641 + MGP_C57BL6NJ_P0033485 Ddx42 protein_coding protein_coding MGP_C57BL6NJ_T0033486.1 MGP_C57BL6NJ_G0019690.1 mouse_genomes_project 11 112875982 112878317 + Ddx42 protein_coding processed_transcript MGP_C57BL6NJ_T0028581.1 MGP_C57BL6NJ_G0018449.1 mouse_genomes_project 11 15182048 15232394 + MGP_C57BL6NJ_P0028581 Ppp3r1 protein_coding protein_coding MGP_C57BL6NJ_T0028583.1 MGP_C57BL6NJ_G0018449.1 mouse_genomes_project 11 15221558 15224978 + Ppp3r1 protein_coding processed_transcript MGP_C57BL6NJ_T0029685.1 MGP_C57BL6NJ_G0018738.1 mouse_genomes_project 11 59667294 59689093 + MGP_C57BL6NJ_P0029685 Irgm2 protein_coding protein_coding MGP_C57BL6NJ_T0029686.1 MGP_C57BL6NJ_G0018738.1 mouse_genomes_project 11 59681349 59689101 + MGP_C57BL6NJ_P0029686 Irgm2 protein_coding protein_coding MGP_C57BL6NJ_T0009914.1 MGP_C57BL6NJ_G0007999.1 mouse_genomes_project 11 81632074 81632135 + Mir7653 miRNA miRNA MGP_C57BL6NJ_T0009939.1 MGP_C57BL6NJ_G0008024.1 mouse_genomes_project 11 103845497 103845575 + Gm27399 miRNA miRNA MGP_C57BL6NJ_T0017731.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119912415 119968009 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017732.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119913303 119922513 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017733.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119913327 119919410 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017734.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119919212 119929013 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017735.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119920198 119922513 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017736.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119922389 119967575 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017737.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119922476 119967993 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017738.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119929082 119945192 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017739.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119929198 119968015 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017740.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119929273 119967993 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017741.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119936256 119945351 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017742.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119936367 119968016 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017743.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119936474 119968009 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017744.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119941475 119967994 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017745.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119941475 119967994 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017746.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119941477 120047801 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017747.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119945156 119967992 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0017748.1 MGP_C57BL6NJ_G0015611.1 mouse_genomes_project 11 119975526 120003337 - BC006965 processed_transcript processed_transcript MGP_C57BL6NJ_T0034617.1 MGP_C57BL6NJ_G0019916.1 mouse_genomes_project 11 128996107 128998021 - MGP_C57BL6NJ_P0034617 Dcxr protein_coding protein_coding MGP_C57BL6NJ_T0034618.1 MGP_C57BL6NJ_G0019916.1 mouse_genomes_project 11 128996107 128997983 - MGP_C57BL6NJ_P0034618 Dcxr protein_coding protein_coding MGP_C57BL6NJ_T0034619.1 MGP_C57BL6NJ_G0019916.1 mouse_genomes_project 11 128996133 128997984 - Dcxr protein_coding retained_intron MGP_C57BL6NJ_T0034620.1 MGP_C57BL6NJ_G0019916.1 mouse_genomes_project 11 128996163 128997969 - Dcxr protein_coding processed_transcript MGP_C57BL6NJ_T0030525.1 MGP_C57BL6NJ_G0018951.1 mouse_genomes_project 11 72445258 72446358 + MGP_C57BL6NJ_P0030525 Tmem256 protein_coding protein_coding MGP_C57BL6NJ_T0030526.1 MGP_C57BL6NJ_G0018951.1 mouse_genomes_project 11 72445268 72446363 + MGP_C57BL6NJ_P0030526 Tmem256 protein_coding protein_coding MGP_C57BL6NJ_T0030527.1 MGP_C57BL6NJ_G0018951.1 mouse_genomes_project 11 72445299 72446192 + Tmem256 protein_coding processed_transcript MGP_C57BL6NJ_T0030528.1 MGP_C57BL6NJ_G0018951.1 mouse_genomes_project 11 72445307 72446357 + Tmem256 protein_coding processed_transcript MGP_C57BL6NJ_T0030529.1 MGP_C57BL6NJ_G0018951.1 mouse_genomes_project 11 72445382 72446318 + Tmem256 protein_coding processed_transcript MGP_C57BL6NJ_T0032746.1 MGP_C57BL6NJ_G0019524.1 mouse_genomes_project 11 105880068 105880829 - MGP_C57BL6NJ_P0032746 Krtap17-1 protein_coding protein_coding MGP_C57BL6NJ_T0032487.1 MGP_C57BL6NJ_G0019430.1 mouse_genomes_project 11 103236612 103245964 - MGP_C57BL6NJ_P0032487 Pcgf2 protein_coding protein_coding MGP_C57BL6NJ_T0032488.1 MGP_C57BL6NJ_G0019430.1 mouse_genomes_project 11 103237153 103239035 - Pcgf2 protein_coding processed_transcript MGP_C57BL6NJ_T0032489.1 MGP_C57BL6NJ_G0019430.1 mouse_genomes_project 11 103243824 103246207 - Pcgf2 protein_coding processed_transcript MGP_C57BL6NJ_T0101028.1 MGP_C57BL6NJ_G0039074.1 mouse_genomes_project 11 34240275 34240402 - Gm22022 snoRNA snoRNA MGP_C57BL6NJ_T0012850.1 MGP_C57BL6NJ_G0010895.1 mouse_genomes_project 11 29563685 29564522 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032955.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325319 107338135 + MGP_C57BL6NJ_P0032955 Vps25 protein_coding protein_coding MGP_C57BL6NJ_T0032956.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325319 107336635 + MGP_C57BL6NJ_P0032956 Vps25 protein_coding protein_coding MGP_C57BL6NJ_T0032957.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325341 107338131 + MGP_C57BL6NJ_P0032957 Vps25 protein_coding protein_coding MGP_C57BL6NJ_T0032958.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325342 107337502 + MGP_C57BL6NJ_P0032958 Vps25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032959.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325347 107337909 + MGP_C57BL6NJ_P0032959 Vps25 protein_coding protein_coding MGP_C57BL6NJ_T0032960.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325365 107337642 + MGP_C57BL6NJ_P0032960 Vps25 protein_coding protein_coding MGP_C57BL6NJ_T0032961.1 MGP_C57BL6NJ_G0019580.1 mouse_genomes_project 11 107325376 107337796 + Vps25 protein_coding retained_intron MGP_C57BL6NJ_T0012846.1 MGP_C57BL6NJ_G0010891.1 mouse_genomes_project 11 28502927 28503817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013000.1 MGP_C57BL6NJ_G0011045.1 mouse_genomes_project 11 86783281 86785108 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102735.1 MGP_C57BL6NJ_G0040530.1 mouse_genomes_project 11 51890353 51891289 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030689.1 MGP_C57BL6NJ_G0018981.1 mouse_genomes_project 11 72860098 72873865 - MGP_C57BL6NJ_P0030689 Alox12 protein_coding protein_coding MGP_C57BL6NJ_T0030690.1 MGP_C57BL6NJ_G0018981.1 mouse_genomes_project 11 72867474 72873853 - MGP_C57BL6NJ_P0030690 Alox12 protein_coding protein_coding MGP_C57BL6NJ_T0006445.1 MGP_C57BL6NJ_G0005379.1 mouse_genomes_project 11 81339338 81357757 - Gm11190 lincRNA lincRNA MGP_C57BL6NJ_T0033879.1 MGP_C57BL6NJ_G0019780.1 mouse_genomes_project 11 123104116 123111836 + MGP_C57BL6NJ_P0033879 Trim80 protein_coding protein_coding MGP_C57BL6NJ_T0033880.1 MGP_C57BL6NJ_G0019780.1 mouse_genomes_project 11 123104125 123111843 + MGP_C57BL6NJ_P0033880 Trim80 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0012746.1 MGP_C57BL6NJ_G0010791.1 mouse_genomes_project 11 86237 86608 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028485.1 MGP_C57BL6NJ_G0018428.1 mouse_genomes_project 11 5792645 6036509 - MGP_C57BL6NJ_P0028485 Tns3 protein_coding protein_coding MGP_C57BL6NJ_T0028486.1 MGP_C57BL6NJ_G0018428.1 mouse_genomes_project 11 5811990 5831964 - Tns3 protein_coding processed_transcript MGP_C57BL6NJ_T0028487.1 MGP_C57BL6NJ_G0018428.1 mouse_genomes_project 11 5901342 5909155 - Tns3 protein_coding processed_transcript MGP_C57BL6NJ_T0028488.1 MGP_C57BL6NJ_G0018428.1 mouse_genomes_project 11 5909496 5942912 - Tns3 protein_coding processed_transcript MGP_C57BL6NJ_T0030724.1 MGP_C57BL6NJ_G0018990.1 mouse_genomes_project 11 73201284 73202385 - MGP_C57BL6NJ_P0030724 Vmo1 protein_coding protein_coding MGP_C57BL6NJ_T0099332.1 MGP_C57BL6NJ_G0037393.1 mouse_genomes_project 11 127306022 127306586 - Gm11753 sense_intronic sense_intronic MGP_C57BL6NJ_T0013078.1 MGP_C57BL6NJ_G0011123.1 mouse_genomes_project 11 122434888 122435343 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031459.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81767680 81791286 + MGP_C57BL6NJ_P0031459 Spag5 protein_coding protein_coding MGP_C57BL6NJ_T0031460.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81767775 81783165 + Spag5 protein_coding retained_intron MGP_C57BL6NJ_T0031461.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81767806 81782838 + Spag5 protein_coding retained_intron MGP_C57BL6NJ_T0031462.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81781089 81782059 + Spag5 protein_coding retained_intron MGP_C57BL6NJ_T0031463.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81783331 81784872 + Spag5 protein_coding retained_intron MGP_C57BL6NJ_T0031464.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81786792 81789204 + Spag5 protein_coding processed_transcript MGP_C57BL6NJ_T0031465.1 MGP_C57BL6NJ_G0019165.1 mouse_genomes_project 11 81788754 81789569 + Spag5 protein_coding retained_intron MGP_C57BL6NJ_T0032193.1 MGP_C57BL6NJ_G0019351.1 mouse_genomes_project 11 99592665 99603041 - MGP_C57BL6NJ_P0032193 Epn3 protein_coding protein_coding MGP_C57BL6NJ_T0032194.1 MGP_C57BL6NJ_G0019351.1 mouse_genomes_project 11 99594179 99602976 - Epn3 protein_coding processed_transcript MGP_C57BL6NJ_T0032195.1 MGP_C57BL6NJ_G0019351.1 mouse_genomes_project 11 99594217 99602897 - MGP_C57BL6NJ_P0032195 Epn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032196.1 MGP_C57BL6NJ_G0019351.1 mouse_genomes_project 11 99599068 99601317 - Epn3 protein_coding processed_transcript MGP_C57BL6NJ_T0032197.1 MGP_C57BL6NJ_G0019351.1 mouse_genomes_project 11 99599432 99602187 - Epn3 protein_coding processed_transcript MGP_C57BL6NJ_T0033999.1 MGP_C57BL6NJ_G0019798.1 mouse_genomes_project 11 123634458 123640753 + MGP_C57BL6NJ_P0033999 Smim5 protein_coding protein_coding MGP_C57BL6NJ_T0034000.1 MGP_C57BL6NJ_G0019798.1 mouse_genomes_project 11 123634670 123640380 + MGP_C57BL6NJ_P0034000 Smim5 protein_coding protein_coding MGP_C57BL6NJ_T0034001.1 MGP_C57BL6NJ_G0019798.1 mouse_genomes_project 11 123634694 123640197 + MGP_C57BL6NJ_P0034001 Smim5 protein_coding protein_coding MGP_C57BL6NJ_T0033163.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108548558 108565406 - MGP_C57BL6NJ_P0033163 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033164.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108548559 108565406 - MGP_C57BL6NJ_P0033164 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033165.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108549906 108561840 - MGP_C57BL6NJ_P0033165 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033166.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108549906 108560690 - MGP_C57BL6NJ_P0033166 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033167.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108549906 108560666 - MGP_C57BL6NJ_P0033167 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033168.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108549906 108565406 - MGP_C57BL6NJ_P0033168 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033169.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108549975 108561272 - MGP_C57BL6NJ_P0033169 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033170.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108550280 108561620 - MGP_C57BL6NJ_P0033170 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033171.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108550468 108566052 - MGP_C57BL6NJ_P0033171 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033172.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108553025 108553894 - Ubtf protein_coding retained_intron MGP_C57BL6NJ_T0033173.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108555740 108560661 - MGP_C57BL6NJ_P0033173 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0033174.1 MGP_C57BL6NJ_G0019622.1 mouse_genomes_project 11 108557594 108560691 - MGP_C57BL6NJ_P0033174 Ubtf protein_coding protein_coding MGP_C57BL6NJ_T0101036.1 MGP_C57BL6NJ_G0039082.1 mouse_genomes_project 11 56683529 56683669 + Gm22884 snoRNA snoRNA MGP_C57BL6NJ_T0030990.1 MGP_C57BL6NJ_G0019046.1 mouse_genomes_project 11 76105129 76113660 + MGP_C57BL6NJ_P0030990 Tax1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0030991.1 MGP_C57BL6NJ_G0019046.1 mouse_genomes_project 11 76105297 76114670 + Tax1bp3 protein_coding retained_intron MGP_C57BL6NJ_T0030992.1 MGP_C57BL6NJ_G0019046.1 mouse_genomes_project 11 76105316 76113555 + MGP_C57BL6NJ_P0030992 Tax1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0030498.1 MGP_C57BL6NJ_G0018941.1 mouse_genomes_project 11 72266315 72278806 - MGP_C57BL6NJ_P0030498 Tnfsf12 protein_coding protein_coding MGP_C57BL6NJ_T0030499.1 MGP_C57BL6NJ_G0018941.1 mouse_genomes_project 11 72267405 72278478 - MGP_C57BL6NJ_P0030499 Tnfsf12 protein_coding protein_coding MGP_C57BL6NJ_T0101035.1 MGP_C57BL6NJ_G0039081.1 mouse_genomes_project 11 52540390 52540534 - Gm25291 snoRNA snoRNA MGP_C57BL6NJ_T0031179.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78760653 78804820 + MGP_C57BL6NJ_P0031179 Pitpna protein_coding protein_coding MGP_C57BL6NJ_T0031180.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78760664 78804794 + MGP_C57BL6NJ_P0031180 Pitpna protein_coding protein_coding MGP_C57BL6NJ_T0031181.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78760675 78802746 + MGP_C57BL6NJ_P0031181 Pitpna protein_coding protein_coding MGP_C57BL6NJ_T0031182.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78760715 78771105 + Pitpna protein_coding retained_intron MGP_C57BL6NJ_T0031183.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78760715 78802449 + MGP_C57BL6NJ_P0031183 Pitpna protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031184.1 MGP_C57BL6NJ_G0019109.1 mouse_genomes_project 11 78796686 78802322 + Pitpna protein_coding processed_transcript MGP_C57BL6NJ_T0033190.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108666802 108671362 - MGP_C57BL6NJ_P0033190 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033191.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108666802 108671307 - MGP_C57BL6NJ_P0033191 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033192.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108666859 108668311 - MGP_C57BL6NJ_P0033192 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033193.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108666962 108671324 - Slc25a39 protein_coding retained_intron MGP_C57BL6NJ_T0033194.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108667608 108671326 - MGP_C57BL6NJ_P0033194 Slc25a39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033195.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108667835 108671274 - Slc25a39 protein_coding retained_intron MGP_C57BL6NJ_T0033196.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108667849 108670634 - MGP_C57BL6NJ_P0033196 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033197.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108667879 108671305 - MGP_C57BL6NJ_P0033197 Slc25a39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033198.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668206 108671281 - Slc25a39 protein_coding retained_intron MGP_C57BL6NJ_T0033199.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668301 108671133 - MGP_C57BL6NJ_P0033199 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033200.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668426 108670773 - MGP_C57BL6NJ_P0033200 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033201.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668604 108671201 - MGP_C57BL6NJ_P0033201 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033202.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668671 108671764 - MGP_C57BL6NJ_P0033202 Slc25a39 protein_coding protein_coding MGP_C57BL6NJ_T0033203.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108668840 108670626 - Slc25a39 protein_coding processed_transcript MGP_C57BL6NJ_T0033204.1 MGP_C57BL6NJ_G0019625.1 mouse_genomes_project 11 108669556 108670702 - Slc25a39 protein_coding retained_intron MGP_C57BL6NJ_T0031056.1 MGP_C57BL6NJ_G0019078.1 mouse_genomes_project 11 77194560 77204778 + MGP_C57BL6NJ_P0031056 protein_coding protein_coding MGP_C57BL6NJ_T0031057.1 MGP_C57BL6NJ_G0019078.1 mouse_genomes_project 11 77194584 77202018 + protein_coding processed_transcript MGP_C57BL6NJ_T0013018.1 MGP_C57BL6NJ_G0011063.1 mouse_genomes_project 11 95615330 95616912 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013048.1 MGP_C57BL6NJ_G0011093.1 mouse_genomes_project 11 108822348 108822669 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029130.1 MGP_C57BL6NJ_G0018587.1 mouse_genomes_project 11 46583739 46652282 - MGP_C57BL6NJ_P0029130 Itk protein_coding protein_coding MGP_C57BL6NJ_T0029131.1 MGP_C57BL6NJ_G0018587.1 mouse_genomes_project 11 46583739 46652304 - MGP_C57BL6NJ_P0029131 Itk protein_coding protein_coding MGP_C57BL6NJ_T0029132.1 MGP_C57BL6NJ_G0018587.1 mouse_genomes_project 11 46604284 46652246 - MGP_C57BL6NJ_P0029132 Itk protein_coding protein_coding MGP_C57BL6NJ_T0029133.1 MGP_C57BL6NJ_G0018587.1 mouse_genomes_project 11 46624149 46652250 - Itk protein_coding retained_intron MGP_C57BL6NJ_T0031210.1 MGP_C57BL6NJ_G0019114.1 mouse_genomes_project 11 78964526 78993303 - MGP_C57BL6NJ_P0031210 protein_coding protein_coding MGP_C57BL6NJ_T0012961.1 MGP_C57BL6NJ_G0011006.1 mouse_genomes_project 11 73099981 73480979 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030695.1 MGP_C57BL6NJ_G0018983.1 mouse_genomes_project 11 72978498 72986362 - MGP_C57BL6NJ_P0030695 Alox15 protein_coding protein_coding MGP_C57BL6NJ_T0030696.1 MGP_C57BL6NJ_G0018983.1 mouse_genomes_project 11 72978951 72980043 - Alox15 protein_coding processed_transcript MGP_C57BL6NJ_T0030255.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373666 70639885 + MGP_C57BL6NJ_P0030255 Stx8 protein_coding protein_coding MGP_C57BL6NJ_T0030256.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373942 70395073 + MGP_C57BL6NJ_P0030256 Stx8 protein_coding protein_coding MGP_C57BL6NJ_T0030257.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373953 70382065 + MGP_C57BL6NJ_P0030257 Stx8 protein_coding protein_coding MGP_C57BL6NJ_T0030258.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373963 70636843 + Stx8 protein_coding processed_transcript MGP_C57BL6NJ_T0030259.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373965 70381938 + Stx8 protein_coding processed_transcript MGP_C57BL6NJ_T0030260.1 MGP_C57BL6NJ_G0018890.1 mouse_genomes_project 11 70373979 70381115 + Stx8 protein_coding processed_transcript MGP_C57BL6NJ_T0099732.1 MGP_C57BL6NJ_G0037778.1 mouse_genomes_project 11 2352529 2352636 + Gm25142 snRNA snRNA MGP_C57BL6NJ_T0033371.1 MGP_C57BL6NJ_G0019663.1 mouse_genomes_project 11 110397637 110419644 + MGP_C57BL6NJ_P0033371 Arf2 protein_coding protein_coding MGP_C57BL6NJ_T0033372.1 MGP_C57BL6NJ_G0019663.1 mouse_genomes_project 11 110397769 110419644 + MGP_C57BL6NJ_P0033372 Arf2 protein_coding protein_coding MGP_C57BL6NJ_T0033373.1 MGP_C57BL6NJ_G0019663.1 mouse_genomes_project 11 110406392 110416205 + Arf2 protein_coding retained_intron MGP_C57BL6NJ_T0033374.1 MGP_C57BL6NJ_G0019663.1 mouse_genomes_project 11 110413895 110417934 + MGP_C57BL6NJ_P0033374 Arf2 protein_coding protein_coding MGP_C57BL6NJ_T0012940.1 MGP_C57BL6NJ_G0010985.1 mouse_genomes_project 11 63091205 63091661 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032868.1 MGP_C57BL6NJ_G0019562.1 mouse_genomes_project 11 106762174 106803965 - MGP_C57BL6NJ_P0032868 Stat5b protein_coding protein_coding MGP_C57BL6NJ_T0032869.1 MGP_C57BL6NJ_G0019562.1 mouse_genomes_project 11 106762174 106836431 - MGP_C57BL6NJ_P0032869 Stat5b protein_coding protein_coding MGP_C57BL6NJ_T0032870.1 MGP_C57BL6NJ_G0019562.1 mouse_genomes_project 11 106780146 106836245 - Stat5b protein_coding processed_transcript MGP_C57BL6NJ_T0031856.1 MGP_C57BL6NJ_G0019272.1 mouse_genomes_project 11 89312172 89360920 - MGP_C57BL6NJ_P0031856 Appbp2 protein_coding protein_coding MGP_C57BL6NJ_T0032719.1 MGP_C57BL6NJ_G0019498.1 mouse_genomes_project 11 105446339 105447354 - MGP_C57BL6NJ_P0032719 Krtap4-1 protein_coding protein_coding MGP_C57BL6NJ_T0028442.1 MGP_C57BL6NJ_G0018417.1 mouse_genomes_project 11 3690804 3699123 - MGP_C57BL6NJ_P0028442 Purb protein_coding protein_coding MGP_C57BL6NJ_T0034112.1 MGP_C57BL6NJ_G0019820.1 mouse_genomes_project 11 124245655 124258691 - MGP_C57BL6NJ_P0034112 Qrich2 protein_coding protein_coding MGP_C57BL6NJ_T0034113.1 MGP_C57BL6NJ_G0019820.1 mouse_genomes_project 11 124245659 124259581 - MGP_C57BL6NJ_P0034113 Qrich2 protein_coding protein_coding MGP_C57BL6NJ_T0034114.1 MGP_C57BL6NJ_G0019820.1 mouse_genomes_project 11 124248871 124251322 - Qrich2 protein_coding retained_intron MGP_C57BL6NJ_T0029912.1 MGP_C57BL6NJ_G0018814.1 mouse_genomes_project 11 62549601 62550200 - Flii protein_coding retained_intron MGP_C57BL6NJ_T0029913.1 MGP_C57BL6NJ_G0018814.1 mouse_genomes_project 11 62549621 62562742 - MGP_C57BL6NJ_P0029913 Flii protein_coding protein_coding MGP_C57BL6NJ_T0029914.1 MGP_C57BL6NJ_G0018814.1 mouse_genomes_project 11 62554705 62555620 - Flii protein_coding retained_intron MGP_C57BL6NJ_T0029915.1 MGP_C57BL6NJ_G0018814.1 mouse_genomes_project 11 62559843 62562702 - Flii protein_coding retained_intron MGP_C57BL6NJ_T0033520.1 MGP_C57BL6NJ_G0019700.1 mouse_genomes_project 11 113041731 113159743 - MGP_C57BL6NJ_P0033520 Ern1 protein_coding protein_coding MGP_C57BL6NJ_T0033521.1 MGP_C57BL6NJ_G0019700.1 mouse_genomes_project 11 113044532 113159799 - Ern1 protein_coding processed_transcript MGP_C57BL6NJ_T0033522.1 MGP_C57BL6NJ_G0019700.1 mouse_genomes_project 11 113060882 113159783 - MGP_C57BL6NJ_P0033522 Ern1 protein_coding protein_coding MGP_C57BL6NJ_T0033523.1 MGP_C57BL6NJ_G0019700.1 mouse_genomes_project 11 113083375 113159755 - MGP_C57BL6NJ_P0033523 Ern1 protein_coding protein_coding MGP_C57BL6NJ_T0033524.1 MGP_C57BL6NJ_G0019700.1 mouse_genomes_project 11 113127942 113159750 - MGP_C57BL6NJ_P0033524 Ern1 protein_coding protein_coding MGP_C57BL6NJ_T0003458.1 MGP_C57BL6NJ_G0003179.1 mouse_genomes_project 11 109726973 109732363 + Arhgap27os2 antisense antisense MGP_C57BL6NJ_T0032431.1 MGP_C57BL6NJ_G0019417.1 mouse_genomes_project 11 102563212 102586071 - MGP_C57BL6NJ_P0032431 Tbx21 protein_coding protein_coding MGP_C57BL6NJ_T0033152.1 MGP_C57BL6NJ_G0019620.1 mouse_genomes_project 11 108526213 108531277 + MGP_C57BL6NJ_P0033152 Tmub2 protein_coding protein_coding MGP_C57BL6NJ_T0033153.1 MGP_C57BL6NJ_G0019620.1 mouse_genomes_project 11 108526221 108529494 + Tmub2 protein_coding processed_transcript MGP_C57BL6NJ_T0033154.1 MGP_C57BL6NJ_G0019620.1 mouse_genomes_project 11 108526221 108531277 + MGP_C57BL6NJ_P0033154 Tmub2 protein_coding protein_coding MGP_C57BL6NJ_T0033155.1 MGP_C57BL6NJ_G0019620.1 mouse_genomes_project 11 108526233 108528674 + Tmub2 protein_coding processed_transcript MGP_C57BL6NJ_T0033156.1 MGP_C57BL6NJ_G0019620.1 mouse_genomes_project 11 108526478 108531277 + MGP_C57BL6NJ_P0033156 Tmub2 protein_coding protein_coding MGP_C57BL6NJ_T0012918.1 MGP_C57BL6NJ_G0010963.1 mouse_genomes_project 11 56758086 56758556 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031123.1 MGP_C57BL6NJ_G0019096.1 mouse_genomes_project 11 78283845 78286739 - MGP_C57BL6NJ_P0031123 Ovca2 protein_coding protein_coding MGP_C57BL6NJ_T0031126.1 MGP_C57BL6NJ_G0019096.1 mouse_genomes_project 11 78285704 78286691 - Ovca2 protein_coding processed_transcript MGP_C57BL6NJ_T0009949.1 MGP_C57BL6NJ_G0008034.1 mouse_genomes_project 11 108950564 108950673 - Gm22920 miRNA miRNA MGP_C57BL6NJ_T0031027.1 MGP_C57BL6NJ_G0019061.1 mouse_genomes_project 11 76585363 76586302 + MGP_C57BL6NJ_P0031027 Olfr384 protein_coding protein_coding MGP_C57BL6NJ_T0012852.1 MGP_C57BL6NJ_G0010897.1 mouse_genomes_project 11 29614770 29616459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029805.1 MGP_C57BL6NJ_G0018792.1 mouse_genomes_project 11 61203587 61223055 - MGP_C57BL6NJ_P0029805 Zkscan17 protein_coding protein_coding MGP_C57BL6NJ_T0029806.1 MGP_C57BL6NJ_G0018792.1 mouse_genomes_project 11 61216431 61223108 - Zkscan17 protein_coding processed_transcript MGP_C57BL6NJ_T0029807.1 MGP_C57BL6NJ_G0018792.1 mouse_genomes_project 11 61221054 61247515 - Zkscan17 protein_coding processed_transcript MGP_C57BL6NJ_T0029808.1 MGP_C57BL6NJ_G0018792.1 mouse_genomes_project 11 61221060 61223108 - Zkscan17 protein_coding processed_transcript MGP_C57BL6NJ_T0029809.1 MGP_C57BL6NJ_G0018792.1 mouse_genomes_project 11 61246335 61247635 - Zkscan17 protein_coding processed_transcript MGP_C57BL6NJ_T0009873.1 MGP_C57BL6NJ_G0007958.1 mouse_genomes_project 11 54385128 54385199 + Mir6920 miRNA miRNA MGP_C57BL6NJ_T0006369.1 MGP_C57BL6NJ_G0005315.1 mouse_genomes_project 11 28567291 28605560 - Gm12092 lincRNA lincRNA MGP_C57BL6NJ_T0030647.1 MGP_C57BL6NJ_G0018973.1 mouse_genomes_project 11 72750835 72754828 + protein_coding processed_transcript MGP_C57BL6NJ_T0013071.1 MGP_C57BL6NJ_G0011116.1 mouse_genomes_project 11 118782719 118783209 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003397.1 MGP_C57BL6NJ_G0003132.1 mouse_genomes_project 11 89879267 89895641 - Bcas3os1 antisense antisense MGP_C57BL6NJ_T0003398.1 MGP_C57BL6NJ_G0003132.1 mouse_genomes_project 11 89880304 89895641 - Bcas3os1 antisense antisense MGP_C57BL6NJ_T0032432.1 MGP_C57BL6NJ_G0019418.1 mouse_genomes_project 11 102611917 102625453 - MGP_C57BL6NJ_P0032432 Tbkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0032433.1 MGP_C57BL6NJ_G0019418.1 mouse_genomes_project 11 102611919 102625453 - MGP_C57BL6NJ_P0032433 Tbkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0032434.1 MGP_C57BL6NJ_G0019418.1 mouse_genomes_project 11 102611923 102625787 - MGP_C57BL6NJ_P0032434 Tbkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0032435.1 MGP_C57BL6NJ_G0019418.1 mouse_genomes_project 11 102612845 102626777 - MGP_C57BL6NJ_P0032435 Tbkbp1 protein_coding protein_coding MGP_C57BL6NJ_T0032436.1 MGP_C57BL6NJ_G0019418.1 mouse_genomes_project 11 102614152 102625789 - MGP_C57BL6NJ_P0032436 Tbkbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034531.1 MGP_C57BL6NJ_G0019902.1 mouse_genomes_project 11 128838269 128841790 - MGP_C57BL6NJ_P0034531 Arhgdia protein_coding protein_coding MGP_C57BL6NJ_T0034532.1 MGP_C57BL6NJ_G0019902.1 mouse_genomes_project 11 128838274 128841546 - MGP_C57BL6NJ_P0034532 Arhgdia protein_coding protein_coding MGP_C57BL6NJ_T0031882.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90413111 90468647 - MGP_C57BL6NJ_P0031882 Ints2 protein_coding protein_coding MGP_C57BL6NJ_T0031883.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90414518 90467643 - MGP_C57BL6NJ_P0031883 Ints2 protein_coding protein_coding MGP_C57BL6NJ_T0031884.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90422477 90433813 - MGP_C57BL6NJ_P0031884 Ints2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031885.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90429522 90440511 - Ints2 protein_coding retained_intron MGP_C57BL6NJ_T0031886.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90443004 90468638 - Ints2 protein_coding retained_intron MGP_C57BL6NJ_T0031887.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90443944 90447418 - Ints2 protein_coding retained_intron MGP_C57BL6NJ_T0031888.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90461071 90468672 - MGP_C57BL6NJ_P0031888 Ints2 protein_coding protein_coding MGP_C57BL6NJ_T0031889.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90466456 90468651 - MGP_C57BL6NJ_P0031889 Ints2 protein_coding protein_coding MGP_C57BL6NJ_T0031890.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90467122 90468615 - MGP_C57BL6NJ_P0031890 Ints2 protein_coding protein_coding MGP_C57BL6NJ_T0031891.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90467449 90468437 - Ints2 protein_coding retained_intron MGP_C57BL6NJ_T0031892.1 MGP_C57BL6NJ_G0019279.1 mouse_genomes_project 11 90467539 90468662 - Ints2 protein_coding processed_transcript MGP_C57BL6NJ_T0033027.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107702512 107712594 + MGP_C57BL6NJ_P0033027 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033028.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703136 107738271 + MGP_C57BL6NJ_P0033028 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033029.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703136 107738271 + MGP_C57BL6NJ_P0033029 Nbr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033030.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703145 107724683 + Nbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0033031.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703158 107738270 + MGP_C57BL6NJ_P0033031 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033032.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703160 107738271 + MGP_C57BL6NJ_P0033032 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033033.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107703179 107712593 + MGP_C57BL6NJ_P0033033 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033034.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107706147 107712610 + MGP_C57BL6NJ_P0033034 Nbr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033035.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107706453 107737332 + MGP_C57BL6NJ_P0033035 Nbr1 protein_coding protein_coding MGP_C57BL6NJ_T0033036.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107712566 107712629 + Nbr1 protein_coding misc_RNA MGP_C57BL6NJ_T0033037.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107714833 107721303 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033038.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107721554 107724589 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033039.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107724436 107725546 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033040.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107724829 107725555 + Nbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0033041.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107728489 107731479 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033042.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107731369 107732894 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033043.1 MGP_C57BL6NJ_G0019598.1 mouse_genomes_project 11 107734086 107737108 + Nbr1 protein_coding retained_intron MGP_C57BL6NJ_T0033783.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122370697 122384344 + MGP_C57BL6NJ_P0033783 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033784.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122371085 122389704 + MGP_C57BL6NJ_P0033784 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033785.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122371333 122390962 + MGP_C57BL6NJ_P0033785 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033786.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122371395 122389705 + MGP_C57BL6NJ_P0033786 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033787.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122371425 122384958 + MGP_C57BL6NJ_P0033787 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033788.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122371864 122384508 + MGP_C57BL6NJ_P0033788 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0033789.1 MGP_C57BL6NJ_G0019755.1 mouse_genomes_project 11 122385102 122391216 + MGP_C57BL6NJ_P0033789 Gprc5c protein_coding protein_coding MGP_C57BL6NJ_T0012748.1 MGP_C57BL6NJ_G0010793.1 mouse_genomes_project 11 585817 586189 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101054.1 MGP_C57BL6NJ_G0039100.1 mouse_genomes_project 11 77997372 77997463 + Gm22771 snoRNA snoRNA MGP_C57BL6NJ_T0012979.1 MGP_C57BL6NJ_G0011024.1 mouse_genomes_project 11 80437686 80438015 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032358.1 MGP_C57BL6NJ_G0019402.1 mouse_genomes_project 11 101762225 101764753 + MGP_C57BL6NJ_P0032358 Hoxb1 protein_coding protein_coding MGP_C57BL6NJ_T0032359.1 MGP_C57BL6NJ_G0019402.1 mouse_genomes_project 11 101762731 101763695 + Hoxb1 protein_coding processed_transcript MGP_C57BL6NJ_T0029358.1 MGP_C57BL6NJ_G0018651.1 mouse_genomes_project 11 51684929 51685853 + MGP_C57BL6NJ_P0029358 Olfr51 protein_coding protein_coding MGP_C57BL6NJ_T0028849.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29836366 29949804 + MGP_C57BL6NJ_P0028849 Psme4 protein_coding protein_coding MGP_C57BL6NJ_T0028850.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29836961 29870751 + MGP_C57BL6NJ_P0028850 Psme4 protein_coding protein_coding MGP_C57BL6NJ_T0028851.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29877897 29880090 + Psme4 protein_coding processed_transcript MGP_C57BL6NJ_T0028852.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29896458 29900500 + Psme4 protein_coding processed_transcript MGP_C57BL6NJ_T0028853.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29898739 29899408 + Psme4 protein_coding processed_transcript MGP_C57BL6NJ_T0028854.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29918739 29923103 + MGP_C57BL6NJ_P0028854 Psme4 protein_coding protein_coding MGP_C57BL6NJ_T0028855.1 MGP_C57BL6NJ_G0018509.1 mouse_genomes_project 11 29932561 29943647 + Psme4 protein_coding processed_transcript MGP_C57BL6NJ_T0012960.1 MGP_C57BL6NJ_G0011005.1 mouse_genomes_project 11 72992446 72993090 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009959.1 MGP_C57BL6NJ_G0008044.1 mouse_genomes_project 11 122902473 122902581 + Gm25837 miRNA miRNA MGP_C57BL6NJ_T0006501.1 MGP_C57BL6NJ_G0005415.1 mouse_genomes_project 11 108900637 108902292 - Gm11636 lincRNA lincRNA MGP_C57BL6NJ_T0099734.1 MGP_C57BL6NJ_G0037780.1 mouse_genomes_project 11 9679168 9679324 - Gm24036 snRNA snRNA MGP_C57BL6NJ_T0099790.1 MGP_C57BL6NJ_G0037836.1 mouse_genomes_project 11 101242927 101243052 + Gm24725 snRNA snRNA MGP_C57BL6NJ_T0032702.1 MGP_C57BL6NJ_G0019483.1 mouse_genomes_project 11 105166694 105176515 - MGP_C57BL6NJ_P0032702 Krt28 protein_coding protein_coding MGP_C57BL6NJ_T0028856.1 MGP_C57BL6NJ_G0018510.1 mouse_genomes_project 11 29958878 29968189 + MGP_C57BL6NJ_P0028856 Gpr75 protein_coding protein_coding MGP_C57BL6NJ_T0101012.1 MGP_C57BL6NJ_G0039058.1 mouse_genomes_project 11 3861972 3862105 - Gm24313 snoRNA snoRNA MGP_C57BL6NJ_T0099323.1 MGP_C57BL6NJ_G0037386.1 mouse_genomes_project 11 73602029 73610135 + Gm19967 sense_intronic sense_intronic MGP_C57BL6NJ_T0033455.1 MGP_C57BL6NJ_G0019680.1 mouse_genomes_project 11 112589858 112613898 + MGP_C57BL6NJ_P0033455 Ace protein_coding protein_coding MGP_C57BL6NJ_T0033456.1 MGP_C57BL6NJ_G0019680.1 mouse_genomes_project 11 112593230 112613194 + MGP_C57BL6NJ_P0033456 Ace protein_coding protein_coding MGP_C57BL6NJ_T0033457.1 MGP_C57BL6NJ_G0019680.1 mouse_genomes_project 11 112599338 112613187 + MGP_C57BL6NJ_P0033457 Ace protein_coding protein_coding MGP_C57BL6NJ_T0033458.1 MGP_C57BL6NJ_G0019680.1 mouse_genomes_project 11 112600735 112609047 + Ace protein_coding processed_transcript MGP_C57BL6NJ_T0102149.1 MGP_C57BL6NJ_G0040181.1 mouse_genomes_project 11 3891564 3901605 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102150.1 MGP_C57BL6NJ_G0040181.1 mouse_genomes_project 11 3891790 3892256 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102151.1 MGP_C57BL6NJ_G0040181.1 mouse_genomes_project 11 3892560 3900051 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102152.1 MGP_C57BL6NJ_G0040181.1 mouse_genomes_project 11 3892833 3901582 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0030103.1 MGP_C57BL6NJ_G0018848.1 mouse_genomes_project 11 64573336 64574891 + MGP_C57BL6NJ_P0030103 protein_coding protein_coding MGP_C57BL6NJ_T0028875.1 MGP_C57BL6NJ_G0018516.1 mouse_genomes_project 11 30807406 30814173 - MGP_C57BL6NJ_P0028875 Bod1 protein_coding protein_coding MGP_C57BL6NJ_T0028876.1 MGP_C57BL6NJ_G0018516.1 mouse_genomes_project 11 30808712 30814015 - MGP_C57BL6NJ_P0028876 Bod1 protein_coding protein_coding MGP_C57BL6NJ_T0003270.1 MGP_C57BL6NJ_G0003026.1 mouse_genomes_project 11 9143653 9166770 + Gm11998 antisense antisense MGP_C57BL6NJ_T0012959.1 MGP_C57BL6NJ_G0011004.1 mouse_genomes_project 11 72749394 72749768 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033839.1 MGP_C57BL6NJ_G0019772.1 mouse_genomes_project 11 122964460 122989590 + MGP_C57BL6NJ_P0033839 Otop2 protein_coding protein_coding MGP_C57BL6NJ_T0033841.1 MGP_C57BL6NJ_G0019772.1 mouse_genomes_project 11 122979817 122980799 + Otop2 protein_coding processed_transcript MGP_C57BL6NJ_T0033842.1 MGP_C57BL6NJ_G0019772.1 mouse_genomes_project 11 122980048 122980792 + Otop2 protein_coding processed_transcript MGP_C57BL6NJ_T0033843.1 MGP_C57BL6NJ_G0019772.1 mouse_genomes_project 11 122980212 122989590 + MGP_C57BL6NJ_P0033843 Otop2 protein_coding protein_coding MGP_C57BL6NJ_T0028655.1 MGP_C57BL6NJ_G0018468.1 mouse_genomes_project 11 20503200 20510052 - MGP_C57BL6NJ_P0028655 Otx1 protein_coding protein_coding MGP_C57BL6NJ_T0028656.1 MGP_C57BL6NJ_G0018468.1 mouse_genomes_project 11 20503205 20510147 - Otx1 protein_coding retained_intron MGP_C57BL6NJ_T0028657.1 MGP_C57BL6NJ_G0018468.1 mouse_genomes_project 11 20505294 20512255 - MGP_C57BL6NJ_P0028657 Otx1 protein_coding protein_coding MGP_C57BL6NJ_T0012897.1 MGP_C57BL6NJ_G0010942.1 mouse_genomes_project 11 50150093 50150624 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033255.1 MGP_C57BL6NJ_G0019635.1 mouse_genomes_project 11 109104734 109126609 - MGP_C57BL6NJ_P0033255 Gjc1 protein_coding protein_coding MGP_C57BL6NJ_T0033256.1 MGP_C57BL6NJ_G0019635.1 mouse_genomes_project 11 109104734 109110057 - MGP_C57BL6NJ_P0033256 Gjc1 protein_coding protein_coding MGP_C57BL6NJ_T0033257.1 MGP_C57BL6NJ_G0019635.1 mouse_genomes_project 11 109104734 109126088 - MGP_C57BL6NJ_P0033257 Gjc1 protein_coding protein_coding MGP_C57BL6NJ_T0033258.1 MGP_C57BL6NJ_G0019635.1 mouse_genomes_project 11 109105886 109110944 - Gjc1 protein_coding retained_intron MGP_C57BL6NJ_T0033259.1 MGP_C57BL6NJ_G0019635.1 mouse_genomes_project 11 109106331 109126119 - Gjc1 protein_coding processed_transcript MGP_C57BL6NJ_T0011565.1 MGP_C57BL6NJ_G0009650.1 mouse_genomes_project 11 77688289 77691347 - Gm22993 misc_RNA misc_RNA MGP_C57BL6NJ_T0032939.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107239856 107293804 - MGP_C57BL6NJ_P0032939 Ezh1 protein_coding protein_coding MGP_C57BL6NJ_T0032940.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107242024 107243172 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0032941.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107242479 107266369 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0032942.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107253453 107293799 - MGP_C57BL6NJ_P0032942 Ezh1 protein_coding protein_coding MGP_C57BL6NJ_T0032943.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107254702 107257008 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0032944.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107255367 107274713 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0032945.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107270717 107273540 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0032946.1 MGP_C57BL6NJ_G0019578.1 mouse_genomes_project 11 107285774 107293815 - Ezh1 protein_coding processed_transcript MGP_C57BL6NJ_T0101046.1 MGP_C57BL6NJ_G0039092.1 mouse_genomes_project 11 72247693 72247836 - Gm24029 snoRNA snoRNA MGP_C57BL6NJ_T0028884.1 MGP_C57BL6NJ_G0018520.1 mouse_genomes_project 11 31385209 31399460 - MGP_C57BL6NJ_P0028884 Il9r protein_coding protein_coding MGP_C57BL6NJ_T0028885.1 MGP_C57BL6NJ_G0018520.1 mouse_genomes_project 11 31386665 31399517 - MGP_C57BL6NJ_P0028885 Il9r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028886.1 MGP_C57BL6NJ_G0018520.1 mouse_genomes_project 11 31387951 31399474 - MGP_C57BL6NJ_P0028886 Il9r protein_coding protein_coding MGP_C57BL6NJ_T0028887.1 MGP_C57BL6NJ_G0018520.1 mouse_genomes_project 11 31388167 31399460 - MGP_C57BL6NJ_P0028887 Il9r protein_coding protein_coding MGP_C57BL6NJ_T0028888.1 MGP_C57BL6NJ_G0018520.1 mouse_genomes_project 11 31393925 31399517 - Il9r protein_coding retained_intron MGP_C57BL6NJ_T0028354.1 MGP_C57BL6NJ_G0018394.1 mouse_genomes_project 11 2652541 2657804 + MGP_C57BL6NJ_P0028354 Xbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028355.1 MGP_C57BL6NJ_G0018394.1 mouse_genomes_project 11 2652887 2655937 + Xbp1 protein_coding retained_intron MGP_C57BL6NJ_T0028356.1 MGP_C57BL6NJ_G0018394.1 mouse_genomes_project 11 2653545 2656854 + MGP_C57BL6NJ_P0028356 Xbp1 protein_coding protein_coding MGP_C57BL6NJ_T0028357.1 MGP_C57BL6NJ_G0018394.1 mouse_genomes_project 11 2653805 2657016 + MGP_C57BL6NJ_P0028357 Xbp1 protein_coding protein_coding MGP_C57BL6NJ_T0012815.1 MGP_C57BL6NJ_G0010860.1 mouse_genomes_project 11 19637742 19638279 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028476.1 MGP_C57BL6NJ_G0018423.1 mouse_genomes_project 11 3899845 3918688 + MGP_C57BL6NJ_P0028476 Ramp3 protein_coding protein_coding MGP_C57BL6NJ_T0028477.1 MGP_C57BL6NJ_G0018423.1 mouse_genomes_project 11 3899889 3918685 + Ramp3 protein_coding processed_transcript MGP_C57BL6NJ_T0003488.1 MGP_C57BL6NJ_G0003204.1 mouse_genomes_project 11 121576341 121579376 - antisense antisense MGP_C57BL6NJ_T0003489.1 MGP_C57BL6NJ_G0003204.1 mouse_genomes_project 11 121578571 121579273 - antisense antisense MGP_C57BL6NJ_T0101065.1 MGP_C57BL6NJ_G0039111.1 mouse_genomes_project 11 91736481 91770800 + snoRNA snoRNA MGP_C57BL6NJ_T0029854.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61868621 61964815 + Rai1 protein_coding processed_transcript MGP_C57BL6NJ_T0029855.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61868621 61964813 + MGP_C57BL6NJ_P0029855 Rai1 protein_coding protein_coding MGP_C57BL6NJ_T0029856.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61868785 61951049 + MGP_C57BL6NJ_P0029856 Rai1 protein_coding protein_coding MGP_C57BL6NJ_T0029857.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61904667 61964813 + MGP_C57BL6NJ_P0029857 Rai1 protein_coding protein_coding MGP_C57BL6NJ_T0029858.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61904669 61957643 + MGP_C57BL6NJ_P0029858 Rai1 protein_coding protein_coding MGP_C57BL6NJ_T0029859.1 MGP_C57BL6NJ_G0018804.1 mouse_genomes_project 11 61941497 61964815 + MGP_C57BL6NJ_P0029859 Rai1 protein_coding protein_coding MGP_C57BL6NJ_T0031240.1 MGP_C57BL6NJ_G0019121.1 mouse_genomes_project 11 79438075 79445163 - MGP_C57BL6NJ_P0031240 Gemin4 protein_coding protein_coding MGP_C57BL6NJ_T0031241.1 MGP_C57BL6NJ_G0019121.1 mouse_genomes_project 11 79444577 79445016 - MGP_C57BL6NJ_P0031241 Gemin4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031826.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960467 88996279 + MGP_C57BL6NJ_P0031826 Myo19 protein_coding protein_coding MGP_C57BL6NJ_T0031827.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960489 88963311 + Myo19 protein_coding processed_transcript MGP_C57BL6NJ_T0031828.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960539 88996175 + Myo19 protein_coding processed_transcript MGP_C57BL6NJ_T0031829.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960629 88961323 + Myo19 protein_coding processed_transcript MGP_C57BL6NJ_T0031830.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960672 88996184 + Myo19 protein_coding processed_transcript MGP_C57BL6NJ_T0031831.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88960686 88977544 + MGP_C57BL6NJ_P0031831 Myo19 protein_coding protein_coding MGP_C57BL6NJ_T0031832.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88962905 88996175 + Myo19 protein_coding processed_transcript MGP_C57BL6NJ_T0031833.1 MGP_C57BL6NJ_G0019267.1 mouse_genomes_project 11 88963035 88995574 + MGP_C57BL6NJ_P0031833 Myo19 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006336.1 MGP_C57BL6NJ_G0005287.1 mouse_genomes_project 11 16189223 16196622 + Gm12018 lincRNA lincRNA MGP_C57BL6NJ_T0028804.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476861 28483864 + MGP_C57BL6NJ_P0028804 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028805.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476889 28484383 + MGP_C57BL6NJ_P0028805 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028806.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476900 28480671 + Mtif2 protein_coding processed_transcript MGP_C57BL6NJ_T0028807.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476901 28495758 + MGP_C57BL6NJ_P0028807 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028808.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476903 28490641 + MGP_C57BL6NJ_P0028808 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028809.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28476910 28495719 + MGP_C57BL6NJ_P0028809 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028810.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28483756 28490748 + MGP_C57BL6NJ_P0028810 Mtif2 protein_coding protein_coding MGP_C57BL6NJ_T0028811.1 MGP_C57BL6NJ_G0018501.1 mouse_genomes_project 11 28490446 28492497 + Mtif2 protein_coding processed_transcript MGP_C57BL6NJ_T0029161.1 MGP_C57BL6NJ_G0018597.1 mouse_genomes_project 11 47218480 47945513 - MGP_C57BL6NJ_P0029161 Sgcd protein_coding protein_coding MGP_C57BL6NJ_T0029162.1 MGP_C57BL6NJ_G0018597.1 mouse_genomes_project 11 47306130 47741568 - MGP_C57BL6NJ_P0029162 Sgcd protein_coding protein_coding MGP_C57BL6NJ_T0029163.1 MGP_C57BL6NJ_G0018597.1 mouse_genomes_project 11 47696094 48008174 - Sgcd protein_coding processed_transcript MGP_C57BL6NJ_T0029164.1 MGP_C57BL6NJ_G0018597.1 mouse_genomes_project 11 47945352 48373137 - Sgcd protein_coding processed_transcript MGP_C57BL6NJ_T0102755.1 MGP_C57BL6NJ_G0040550.1 mouse_genomes_project 11 87650217 87651128 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030984.1 MGP_C57BL6NJ_G0019043.1 mouse_genomes_project 11 76048951 76051761 - MGP_C57BL6NJ_P0030984 Gsg2 protein_coding protein_coding MGP_C57BL6NJ_T0099749.1 MGP_C57BL6NJ_G0037795.1 mouse_genomes_project 11 39641395 39641540 + Gm24192 snRNA snRNA MGP_C57BL6NJ_T0030575.1 MGP_C57BL6NJ_G0018961.1 mouse_genomes_project 11 72551206 72556836 + MGP_C57BL6NJ_P0030575 Ybx2 protein_coding protein_coding MGP_C57BL6NJ_T0030576.1 MGP_C57BL6NJ_G0018961.1 mouse_genomes_project 11 72551558 72556829 + MGP_C57BL6NJ_P0030576 Ybx2 protein_coding protein_coding MGP_C57BL6NJ_T0030577.1 MGP_C57BL6NJ_G0018961.1 mouse_genomes_project 11 72555078 72555894 + Ybx2 protein_coding retained_intron MGP_C57BL6NJ_T0030578.1 MGP_C57BL6NJ_G0018961.1 mouse_genomes_project 11 72555775 72556827 + Ybx2 protein_coding retained_intron MGP_C57BL6NJ_T0006505.1 MGP_C57BL6NJ_G0005418.1 mouse_genomes_project 11 109274179 109280267 - 2410004I01Rik lincRNA lincRNA MGP_C57BL6NJ_T0006547.1 MGP_C57BL6NJ_G0005452.1 mouse_genomes_project 11 129434061 129434628 - Gm11791 lincRNA lincRNA MGP_C57BL6NJ_T0003381.1 MGP_C57BL6NJ_G0003119.1 mouse_genomes_project 11 81871731 81882904 + Slc13a2os antisense antisense MGP_C57BL6NJ_T0003445.1 MGP_C57BL6NJ_G0003166.1 mouse_genomes_project 11 106667360 106677478 + Dhx58os antisense antisense MGP_C57BL6NJ_T0032576.1 MGP_C57BL6NJ_G0019451.1 mouse_genomes_project 11 104007829 104009561 + MGP_C57BL6NJ_P0032576 Pnmt protein_coding protein_coding MGP_C57BL6NJ_T0032577.1 MGP_C57BL6NJ_G0019451.1 mouse_genomes_project 11 104008091 104008862 + Pnmt protein_coding processed_transcript MGP_C57BL6NJ_T0029748.1 MGP_C57BL6NJ_G0018773.1 mouse_genomes_project 11 60575193 60583892 + MGP_C57BL6NJ_P0029748 protein_coding protein_coding MGP_C57BL6NJ_T0029749.1 MGP_C57BL6NJ_G0018773.1 mouse_genomes_project 11 60575237 60584415 + MGP_C57BL6NJ_P0029749 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029750.1 MGP_C57BL6NJ_G0018773.1 mouse_genomes_project 11 60575342 60584222 + MGP_C57BL6NJ_P0029750 protein_coding protein_coding MGP_C57BL6NJ_T0029751.1 MGP_C57BL6NJ_G0018773.1 mouse_genomes_project 11 60575342 60584222 + MGP_C57BL6NJ_P0029751 protein_coding protein_coding MGP_C57BL6NJ_T0012787.1 MGP_C57BL6NJ_G0010832.1 mouse_genomes_project 11 12631932 12632683 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031907.1 MGP_C57BL6NJ_G0019283.1 mouse_genomes_project 11 90774412 90797412 + MGP_C57BL6NJ_P0031907 Tubd1 protein_coding protein_coding MGP_C57BL6NJ_T0031908.1 MGP_C57BL6NJ_G0019283.1 mouse_genomes_project 11 90774412 90797413 + MGP_C57BL6NJ_P0031908 Tubd1 protein_coding protein_coding MGP_C57BL6NJ_T0031909.1 MGP_C57BL6NJ_G0019283.1 mouse_genomes_project 11 90774412 90797413 + MGP_C57BL6NJ_P0031909 Tubd1 protein_coding protein_coding MGP_C57BL6NJ_T0031910.1 MGP_C57BL6NJ_G0019283.1 mouse_genomes_project 11 90774412 90797413 + MGP_C57BL6NJ_P0031910 Tubd1 protein_coding protein_coding MGP_C57BL6NJ_T0031911.1 MGP_C57BL6NJ_G0019283.1 mouse_genomes_project 11 90784600 90797413 + MGP_C57BL6NJ_P0031911 Tubd1 protein_coding protein_coding MGP_C57BL6NJ_T0006362.1 MGP_C57BL6NJ_G0005311.1 mouse_genomes_project 11 24041582 24065503 + Gm12069 lincRNA lincRNA MGP_C57BL6NJ_T0032235.1 MGP_C57BL6NJ_G0019363.1 mouse_genomes_project 11 100181203 100199590 + MGP_C57BL6NJ_P0032235 Col1a1 protein_coding protein_coding MGP_C57BL6NJ_T0032236.1 MGP_C57BL6NJ_G0019363.1 mouse_genomes_project 11 100182670 100183088 + Col1a1 protein_coding processed_transcript MGP_C57BL6NJ_T0032237.1 MGP_C57BL6NJ_G0019363.1 mouse_genomes_project 11 100183996 100184726 + Col1a1 protein_coding retained_intron MGP_C57BL6NJ_T0032238.1 MGP_C57BL6NJ_G0019363.1 mouse_genomes_project 11 100190352 100191014 + Col1a1 protein_coding retained_intron MGP_C57BL6NJ_T0012968.1 MGP_C57BL6NJ_G0011013.1 mouse_genomes_project 11 73810559 73811271 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032209.1 MGP_C57BL6NJ_G0019355.1 mouse_genomes_project 11 99678315 99682396 + MGP_C57BL6NJ_P0032209 Chad protein_coding protein_coding MGP_C57BL6NJ_T0013037.1 MGP_C57BL6NJ_G0011082.1 mouse_genomes_project 11 105561686 105561839 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033833.1 MGP_C57BL6NJ_G0019770.1 mouse_genomes_project 11 122917223 122926151 - Fdxr protein_coding processed_transcript MGP_C57BL6NJ_T0033834.1 MGP_C57BL6NJ_G0019770.1 mouse_genomes_project 11 122917223 122926287 - MGP_C57BL6NJ_P0033834 Fdxr protein_coding protein_coding MGP_C57BL6NJ_T0033835.1 MGP_C57BL6NJ_G0019770.1 mouse_genomes_project 11 122917547 122918214 - Fdxr protein_coding processed_transcript MGP_C57BL6NJ_T0033836.1 MGP_C57BL6NJ_G0019770.1 mouse_genomes_project 11 122921063 122925961 - Fdxr protein_coding processed_transcript MGP_C57BL6NJ_T0003491.1 MGP_C57BL6NJ_G0003206.1 mouse_genomes_project 11 123126743 123128153 - Gm11695 antisense antisense MGP_C57BL6NJ_T0003293.1 MGP_C57BL6NJ_G0003044.1 mouse_genomes_project 11 35757843 35761921 + antisense antisense MGP_C57BL6NJ_T0033739.1 MGP_C57BL6NJ_G0019746.1 mouse_genomes_project 11 121053270 121066331 - MGP_C57BL6NJ_P0033739 Cpsf4l protein_coding protein_coding MGP_C57BL6NJ_T0033740.1 MGP_C57BL6NJ_G0019746.1 mouse_genomes_project 11 121053270 121065834 - MGP_C57BL6NJ_P0033740 Cpsf4l protein_coding protein_coding MGP_C57BL6NJ_T0033741.1 MGP_C57BL6NJ_G0019746.1 mouse_genomes_project 11 121053270 121065840 - MGP_C57BL6NJ_P0033741 Cpsf4l protein_coding protein_coding MGP_C57BL6NJ_T0033742.1 MGP_C57BL6NJ_G0019746.1 mouse_genomes_project 11 121053270 121065281 - MGP_C57BL6NJ_P0033742 Cpsf4l protein_coding protein_coding MGP_C57BL6NJ_T0033743.1 MGP_C57BL6NJ_G0019746.1 mouse_genomes_project 11 121059325 121065838 - Cpsf4l protein_coding retained_intron MGP_C57BL6NJ_T0030675.1 MGP_C57BL6NJ_G0018979.1 mouse_genomes_project 11 72853846 72858473 - MGP_C57BL6NJ_P0030675 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030680.1 MGP_C57BL6NJ_G0018979.1 mouse_genomes_project 11 72853890 72858446 - MGP_C57BL6NJ_P0030680 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0006463.1 MGP_C57BL6NJ_G0005389.1 mouse_genomes_project 11 88786991 88790448 - 1700109G15Rik lincRNA lincRNA MGP_C57BL6NJ_T0012933.1 MGP_C57BL6NJ_G0010978.1 mouse_genomes_project 11 62228581 62229023 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032265.1 MGP_C57BL6NJ_G0019372.1 mouse_genomes_project 11 100516600 100524337 + MGP_C57BL6NJ_P0032265 Tac4 protein_coding protein_coding MGP_C57BL6NJ_T0099808.1 MGP_C57BL6NJ_G0037854.1 mouse_genomes_project 11 126242972 126243067 - Gm24060 snRNA snRNA MGP_C57BL6NJ_T0032688.1 MGP_C57BL6NJ_G0019476.1 mouse_genomes_project 11 104917869 104930048 - MGP_C57BL6NJ_P0032688 Ccr7 protein_coding protein_coding MGP_C57BL6NJ_T0009859.1 MGP_C57BL6NJ_G0007944.1 mouse_genomes_project 11 35044705 35044815 + Mir218-2 miRNA miRNA MGP_C57BL6NJ_T0006444.1 MGP_C57BL6NJ_G0005378.1 mouse_genomes_project 11 80856228 80857784 + 2210008F06Rik lincRNA lincRNA MGP_C57BL6NJ_T0031599.1 MGP_C57BL6NJ_G0019203.1 mouse_genomes_project 11 84009287 84027723 - MGP_C57BL6NJ_P0031599 5730455P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0031600.1 MGP_C57BL6NJ_G0019203.1 mouse_genomes_project 11 84009288 84027742 - MGP_C57BL6NJ_P0031600 5730455P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0031601.1 MGP_C57BL6NJ_G0019203.1 mouse_genomes_project 11 84012774 84018090 - 5730455P16Rik protein_coding retained_intron MGP_C57BL6NJ_T0031602.1 MGP_C57BL6NJ_G0019203.1 mouse_genomes_project 11 84020112 84027742 - MGP_C57BL6NJ_P0031602 5730455P16Rik protein_coding protein_coding MGP_C57BL6NJ_T0006420.1 MGP_C57BL6NJ_G0005360.1 mouse_genomes_project 11 67001836 67004990 - Gm12292 lincRNA lincRNA MGP_C57BL6NJ_T0028812.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28496324 28497393 - Rps27a protein_coding processed_transcript MGP_C57BL6NJ_T0028813.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28496324 28498706 - MGP_C57BL6NJ_P0028813 Rps27a protein_coding protein_coding MGP_C57BL6NJ_T0028814.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28496324 28498955 - MGP_C57BL6NJ_P0028814 Rps27a protein_coding protein_coding MGP_C57BL6NJ_T0028815.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28496358 28498728 - MGP_C57BL6NJ_P0028815 Rps27a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028816.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28496377 28498728 - Rps27a protein_coding processed_transcript MGP_C57BL6NJ_T0028817.1 MGP_C57BL6NJ_G0018502.1 mouse_genomes_project 11 28497961 28498737 - Rps27a protein_coding processed_transcript MGP_C57BL6NJ_T0099242.1 MGP_C57BL6NJ_G0037306.1 mouse_genomes_project 11 17936732 17936876 - Gm23386 scaRNA scaRNA MGP_C57BL6NJ_T0029237.1 MGP_C57BL6NJ_G0018620.1 mouse_genomes_project 11 50011014 50011950 + MGP_C57BL6NJ_P0029237 Olfr1387 protein_coding protein_coding MGP_C57BL6NJ_T0031679.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86707926 86715570 - MGP_C57BL6NJ_P0031679 Nle1 protein_coding protein_coding MGP_C57BL6NJ_T0031680.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86707930 86708975 - Nle1 protein_coding retained_intron MGP_C57BL6NJ_T0031681.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86707938 86711448 - MGP_C57BL6NJ_P0031681 Nle1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031682.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86708897 86711427 - Nle1 protein_coding retained_intron MGP_C57BL6NJ_T0031683.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86711264 86711795 - Nle1 protein_coding retained_intron MGP_C57BL6NJ_T0031684.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86711950 86714846 - MGP_C57BL6NJ_P0031684 Nle1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031685.1 MGP_C57BL6NJ_G0019226.1 mouse_genomes_project 11 86712080 86715501 - Nle1 protein_coding retained_intron MGP_C57BL6NJ_T0012870.1 MGP_C57BL6NJ_G0010915.1 mouse_genomes_project 11 39530267 39530910 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006385.1 MGP_C57BL6NJ_G0005329.1 mouse_genomes_project 11 43132411 43148530 - Gm12145 lincRNA lincRNA MGP_C57BL6NJ_T0032302.1 MGP_C57BL6NJ_G0019381.1 mouse_genomes_project 11 101027248 101030372 + MGP_C57BL6NJ_P0032302 B130006D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0009852.1 MGP_C57BL6NJ_G0007937.1 mouse_genomes_project 11 23387930 23388074 - Gm25507 miRNA miRNA MGP_C57BL6NJ_T0006460.1 MGP_C57BL6NJ_G0005388.1 mouse_genomes_project 11 88565091 88575235 + Lhx1os lincRNA lincRNA MGP_C57BL6NJ_T0006461.1 MGP_C57BL6NJ_G0005388.1 mouse_genomes_project 11 88565100 88575235 + Lhx1os lincRNA lincRNA MGP_C57BL6NJ_T0006462.1 MGP_C57BL6NJ_G0005388.1 mouse_genomes_project 11 88565115 88575234 + Lhx1os lincRNA lincRNA MGP_C57BL6NJ_T0012972.1 MGP_C57BL6NJ_G0011017.1 mouse_genomes_project 11 76772411 76772608 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033085.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108213245 108240565 - Mpp3 protein_coding processed_transcript MGP_C57BL6NJ_T0033086.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108213245 108239724 - MGP_C57BL6NJ_P0033086 Mpp3 protein_coding protein_coding MGP_C57BL6NJ_T0033087.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108213245 108243355 - MGP_C57BL6NJ_P0033087 Mpp3 protein_coding protein_coding MGP_C57BL6NJ_T0033088.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108213245 108240586 - MGP_C57BL6NJ_P0033088 Mpp3 protein_coding protein_coding MGP_C57BL6NJ_T0033089.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108222227 108223997 - Mpp3 protein_coding retained_intron MGP_C57BL6NJ_T0033090.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108230965 108240568 - MGP_C57BL6NJ_P0033090 Mpp3 protein_coding protein_coding MGP_C57BL6NJ_T0033091.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108234731 108240565 - Mpp3 protein_coding processed_transcript MGP_C57BL6NJ_T0033092.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108237063 108239487 - Mpp3 protein_coding processed_transcript MGP_C57BL6NJ_T0033093.1 MGP_C57BL6NJ_G0019608.1 mouse_genomes_project 11 108239016 108240386 - Mpp3 protein_coding processed_transcript MGP_C57BL6NJ_T0003387.1 MGP_C57BL6NJ_G0003124.1 mouse_genomes_project 11 83798699 83820797 - Adap2os antisense antisense MGP_C57BL6NJ_T0030119.1 MGP_C57BL6NJ_G0018852.1 mouse_genomes_project 11 64744309 64780411 - MGP_C57BL6NJ_P0030119 Zfp287 protein_coding protein_coding MGP_C57BL6NJ_T0030120.1 MGP_C57BL6NJ_G0018852.1 mouse_genomes_project 11 64758460 64780371 - MGP_C57BL6NJ_P0030120 Zfp287 protein_coding protein_coding MGP_C57BL6NJ_T0030121.1 MGP_C57BL6NJ_G0018852.1 mouse_genomes_project 11 64768754 64777197 - MGP_C57BL6NJ_P0030121 Zfp287 protein_coding protein_coding MGP_C57BL6NJ_T0030122.1 MGP_C57BL6NJ_G0018852.1 mouse_genomes_project 11 64775247 64780431 - Zfp287 protein_coding retained_intron MGP_C57BL6NJ_T0102750.1 MGP_C57BL6NJ_G0040545.1 mouse_genomes_project 11 77337030 77349866 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017713.1 MGP_C57BL6NJ_G0015595.1 mouse_genomes_project 11 103134258 103161064 + 2410003L11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017714.1 MGP_C57BL6NJ_G0015595.1 mouse_genomes_project 11 103152149 103156171 + 2410003L11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0013092.1 MGP_C57BL6NJ_G0011137.1 mouse_genomes_project 11 129430303 129430471 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012812.1 MGP_C57BL6NJ_G0010857.1 mouse_genomes_project 11 19126039 19126569 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034386.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661578 127679665 + MGP_C57BL6NJ_P0034386 Endov protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034387.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661579 127681553 + MGP_C57BL6NJ_P0034387 Endov protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034388.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661608 127679401 + MGP_C57BL6NJ_P0034388 Endov protein_coding protein_coding MGP_C57BL6NJ_T0034389.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661630 127679353 + MGP_C57BL6NJ_P0034389 Endov protein_coding protein_coding MGP_C57BL6NJ_T0034390.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661755 127675361 + MGP_C57BL6NJ_P0034390 Endov protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034391.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661880 127671057 + Endov protein_coding retained_intron MGP_C57BL6NJ_T0034392.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127661989 127673067 + Endov protein_coding processed_transcript MGP_C57BL6NJ_T0034393.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127669750 127676152 + MGP_C57BL6NJ_P0034393 Endov protein_coding protein_coding MGP_C57BL6NJ_T0034394.1 MGP_C57BL6NJ_G0019875.1 mouse_genomes_project 11 127672217 127679363 + Endov protein_coding retained_intron MGP_C57BL6NJ_T0009947.1 MGP_C57BL6NJ_G0008032.1 mouse_genomes_project 11 108459042 108459153 - Mir8101 miRNA miRNA MGP_C57BL6NJ_T0012062.1 MGP_C57BL6NJ_G0010145.1 mouse_genomes_project 11 76730325 76731388 - MGP_C57BL6NJ_P0012062 Olfr388-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0034297.1 MGP_C57BL6NJ_G0019856.1 mouse_genomes_project 11 126371135 126441159 - MGP_C57BL6NJ_P0034297 Timp2 protein_coding protein_coding MGP_C57BL6NJ_T0000980.1 MGP_C57BL6NJ_G0000890.1 mouse_genomes_project 11 88200950 88203268 + TEC TEC MGP_C57BL6NJ_T0031513.1 MGP_C57BL6NJ_G0019179.1 mouse_genomes_project 11 82032237 82041578 - MGP_C57BL6NJ_P0031513 Tmem97 protein_coding protein_coding MGP_C57BL6NJ_T0003326.1 MGP_C57BL6NJ_G0003074.1 mouse_genomes_project 11 59568982 59571427 + Gm12246 antisense antisense MGP_C57BL6NJ_T0009895.1 MGP_C57BL6NJ_G0007980.1 mouse_genomes_project 11 72853332 72853457 - Mir497b miRNA miRNA MGP_C57BL6NJ_T0012898.1 MGP_C57BL6NJ_G0010943.1 mouse_genomes_project 11 50150094 50150624 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029018.1 MGP_C57BL6NJ_G0018557.1 mouse_genomes_project 11 40550576 40584704 - MGP_C57BL6NJ_P0029018 Hmmr protein_coding protein_coding MGP_C57BL6NJ_T0029019.1 MGP_C57BL6NJ_G0018557.1 mouse_genomes_project 11 40571610 40584698 - Hmmr protein_coding processed_transcript MGP_C57BL6NJ_T0029020.1 MGP_C57BL6NJ_G0018557.1 mouse_genomes_project 11 40573544 40584698 - Hmmr protein_coding processed_transcript MGP_C57BL6NJ_T0029021.1 MGP_C57BL6NJ_G0018557.1 mouse_genomes_project 11 40575338 40584673 - Hmmr protein_coding processed_transcript MGP_C57BL6NJ_T0029733.1 MGP_C57BL6NJ_G0018763.1 mouse_genomes_project 11 60356188 60357199 + MGP_C57BL6NJ_P0029733 Olfr316 protein_coding protein_coding MGP_C57BL6NJ_T0031136.1 MGP_C57BL6NJ_G0019100.1 mouse_genomes_project 11 78465847 78527008 + MGP_C57BL6NJ_P0031136 Smyd4 protein_coding protein_coding MGP_C57BL6NJ_T0031137.1 MGP_C57BL6NJ_G0019100.1 mouse_genomes_project 11 78465909 78504342 + Smyd4 protein_coding retained_intron MGP_C57BL6NJ_T0031138.1 MGP_C57BL6NJ_G0019100.1 mouse_genomes_project 11 78508724 78511928 + Smyd4 protein_coding processed_transcript MGP_C57BL6NJ_T0031139.1 MGP_C57BL6NJ_G0019100.1 mouse_genomes_project 11 78520912 78521937 + Smyd4 protein_coding processed_transcript MGP_C57BL6NJ_T0099735.1 MGP_C57BL6NJ_G0037781.1 mouse_genomes_project 11 13292189 13292296 + Gm24707 snRNA snRNA MGP_C57BL6NJ_T0017629.1 MGP_C57BL6NJ_G0015548.1 mouse_genomes_project 11 17009507 17038032 - 8430419K02Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017630.1 MGP_C57BL6NJ_G0015548.1 mouse_genomes_project 11 17017595 17024172 - 8430419K02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017631.1 MGP_C57BL6NJ_G0015548.1 mouse_genomes_project 11 17017699 17041236 - 8430419K02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0012832.1 MGP_C57BL6NJ_G0010877.1 mouse_genomes_project 11 25197467 25198626 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033238.1 MGP_C57BL6NJ_G0019632.1 mouse_genomes_project 11 108954694 108967585 + MGP_C57BL6NJ_P0033238 Meioc protein_coding protein_coding MGP_C57BL6NJ_T0033239.1 MGP_C57BL6NJ_G0019632.1 mouse_genomes_project 11 108956566 108975225 + MGP_C57BL6NJ_P0033239 Meioc protein_coding protein_coding MGP_C57BL6NJ_T0033240.1 MGP_C57BL6NJ_G0019632.1 mouse_genomes_project 11 108956601 108966401 + Meioc protein_coding processed_transcript MGP_C57BL6NJ_T0012958.1 MGP_C57BL6NJ_G0011003.1 mouse_genomes_project 11 72566029 72566521 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029118.1 MGP_C57BL6NJ_G0018582.1 mouse_genomes_project 11 46208747 46241197 + MGP_C57BL6NJ_P0029118 Sox30 protein_coding protein_coding MGP_C57BL6NJ_T0006423.1 MGP_C57BL6NJ_G0005362.1 mouse_genomes_project 11 69249390 69257247 + lincRNA lincRNA MGP_C57BL6NJ_T0006424.1 MGP_C57BL6NJ_G0005362.1 mouse_genomes_project 11 69250629 69257750 + lincRNA lincRNA MGP_C57BL6NJ_T0029382.1 MGP_C57BL6NJ_G0018657.1 mouse_genomes_project 11 52050547 52367594 + MGP_C57BL6NJ_P0029382 Col23a1 protein_coding protein_coding MGP_C57BL6NJ_T0029383.1 MGP_C57BL6NJ_G0018657.1 mouse_genomes_project 11 52356877 52363975 + MGP_C57BL6NJ_P0029383 Col23a1 protein_coding protein_coding MGP_C57BL6NJ_T0029471.1 MGP_C57BL6NJ_G0018682.1 mouse_genomes_project 11 54398098 54399088 - MGP_C57BL6NJ_P0029471 Leap2 protein_coding protein_coding MGP_C57BL6NJ_T0012919.1 MGP_C57BL6NJ_G0010964.1 mouse_genomes_project 11 57535899 57536128 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033475.1 MGP_C57BL6NJ_G0019688.1 mouse_genomes_project 11 112795984 112840808 - Strada protein_coding processed_transcript MGP_C57BL6NJ_T0033476.1 MGP_C57BL6NJ_G0019688.1 mouse_genomes_project 11 112796005 112829509 - MGP_C57BL6NJ_P0033476 Strada protein_coding protein_coding MGP_C57BL6NJ_T0033477.1 MGP_C57BL6NJ_G0019688.1 mouse_genomes_project 11 112796502 112829535 - MGP_C57BL6NJ_P0033477 Strada protein_coding protein_coding MGP_C57BL6NJ_T0033478.1 MGP_C57BL6NJ_G0019688.1 mouse_genomes_project 11 112801129 112829512 - MGP_C57BL6NJ_P0033478 Strada protein_coding protein_coding MGP_C57BL6NJ_T0033479.1 MGP_C57BL6NJ_G0019688.1 mouse_genomes_project 11 112819269 112829545 - MGP_C57BL6NJ_P0033479 Strada protein_coding protein_coding MGP_C57BL6NJ_T0032208.1 MGP_C57BL6NJ_G0019354.1 mouse_genomes_project 11 99668858 99724021 - MGP_C57BL6NJ_P0032208 Acsf2 protein_coding protein_coding MGP_C57BL6NJ_T0032210.1 MGP_C57BL6NJ_G0019354.1 mouse_genomes_project 11 99682563 99723920 - MGP_C57BL6NJ_P0032210 Acsf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0032211.1 MGP_C57BL6NJ_G0019354.1 mouse_genomes_project 11 99682575 99686569 - Acsf2 protein_coding processed_transcript MGP_C57BL6NJ_T0032212.1 MGP_C57BL6NJ_G0019354.1 mouse_genomes_project 11 99686081 99723919 - Acsf2 protein_coding processed_transcript MGP_C57BL6NJ_T0009894.1 MGP_C57BL6NJ_G0007979.1 mouse_genomes_project 11 72628607 72628696 + Mir324 miRNA miRNA MGP_C57BL6NJ_T0003405.1 MGP_C57BL6NJ_G0003137.1 mouse_genomes_project 11 92414098 92455456 - Gm11508 antisense antisense MGP_C57BL6NJ_T0034077.1 MGP_C57BL6NJ_G0019812.1 mouse_genomes_project 11 123985263 124001699 + MGP_C57BL6NJ_P0034077 Ten1 protein_coding protein_coding MGP_C57BL6NJ_T0034078.1 MGP_C57BL6NJ_G0019812.1 mouse_genomes_project 11 123985306 123993257 + Ten1 protein_coding retained_intron MGP_C57BL6NJ_T0034079.1 MGP_C57BL6NJ_G0019812.1 mouse_genomes_project 11 123985367 124001629 + Ten1 protein_coding processed_transcript MGP_C57BL6NJ_T0034080.1 MGP_C57BL6NJ_G0019812.1 mouse_genomes_project 11 123997314 124001629 + Ten1 protein_coding processed_transcript MGP_C57BL6NJ_T0031273.1 MGP_C57BL6NJ_G0019127.1 mouse_genomes_project 11 79960699 79961906 + MGP_C57BL6NJ_P0031273 Bhlha9 protein_coding protein_coding MGP_C57BL6NJ_T0098955.1 MGP_C57BL6NJ_G0037019.1 mouse_genomes_project 11 3476067 3476181 + n-R5s67 rRNA rRNA MGP_C57BL6NJ_T0009899.1 MGP_C57BL6NJ_G0007984.1 mouse_genomes_project 11 73412235 73412305 + Mir6925 miRNA miRNA MGP_C57BL6NJ_T0009957.1 MGP_C57BL6NJ_G0008042.1 mouse_genomes_project 11 114484802 114484860 + Mir6932 miRNA miRNA MGP_C57BL6NJ_T0031442.1 MGP_C57BL6NJ_G0019162.1 mouse_genomes_project 11 81705957 81718138 + MGP_C57BL6NJ_P0031442 Sdf2 protein_coding protein_coding MGP_C57BL6NJ_T0031443.1 MGP_C57BL6NJ_G0019162.1 mouse_genomes_project 11 81711346 81718138 + Sdf2 protein_coding processed_transcript MGP_C57BL6NJ_T0031444.1 MGP_C57BL6NJ_G0019162.1 mouse_genomes_project 11 81711819 81717759 + Sdf2 protein_coding retained_intron MGP_C57BL6NJ_T0012971.1 MGP_C57BL6NJ_G0011016.1 mouse_genomes_project 11 76327553 76327940 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006378.1 MGP_C57BL6NJ_G0005322.1 mouse_genomes_project 11 32511521 32529002 + Gm12116 lincRNA lincRNA MGP_C57BL6NJ_T0030639.1 MGP_C57BL6NJ_G0018971.1 mouse_genomes_project 11 72674845 72678629 + MGP_C57BL6NJ_P0030639 Asgr1 protein_coding protein_coding MGP_C57BL6NJ_T0030640.1 MGP_C57BL6NJ_G0018971.1 mouse_genomes_project 11 72675115 72678629 + MGP_C57BL6NJ_P0030640 Asgr1 protein_coding protein_coding MGP_C57BL6NJ_T0030641.1 MGP_C57BL6NJ_G0018971.1 mouse_genomes_project 11 72675115 72678626 + MGP_C57BL6NJ_P0030641 Asgr1 protein_coding protein_coding MGP_C57BL6NJ_T0030642.1 MGP_C57BL6NJ_G0018971.1 mouse_genomes_project 11 72675458 72678629 + MGP_C57BL6NJ_P0030642 Asgr1 protein_coding protein_coding MGP_C57BL6NJ_T0030643.1 MGP_C57BL6NJ_G0018971.1 mouse_genomes_project 11 72676638 72678105 + MGP_C57BL6NJ_P0030643 Asgr1 protein_coding protein_coding MGP_C57BL6NJ_T0030294.1 MGP_C57BL6NJ_G0018898.1 mouse_genomes_project 11 71377767 71385021 + MGP_C57BL6NJ_P0030294 Rnf222 protein_coding protein_coding MGP_C57BL6NJ_T0102773.1 MGP_C57BL6NJ_G0040568.1 mouse_genomes_project 11 130244531 130249070 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0009901.1 MGP_C57BL6NJ_G0007986.1 mouse_genomes_project 11 75221650 75221759 + Mir6338 miRNA miRNA MGP_C57BL6NJ_T0029916.1 MGP_C57BL6NJ_G0018815.1 mouse_genomes_project 11 62563876 62568430 + MGP_C57BL6NJ_P0029916 Mief2 protein_coding protein_coding MGP_C57BL6NJ_T0029917.1 MGP_C57BL6NJ_G0018815.1 mouse_genomes_project 11 62563921 62566475 + Mief2 protein_coding retained_intron MGP_C57BL6NJ_T0029918.1 MGP_C57BL6NJ_G0018815.1 mouse_genomes_project 11 62563923 62566142 + Mief2 protein_coding processed_transcript MGP_C57BL6NJ_T0009972.1 MGP_C57BL6NJ_G0008057.1 mouse_genomes_project 11 128579421 128579505 - Gm23419 miRNA miRNA MGP_C57BL6NJ_T0028747.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24368471 24414614 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028748.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24368524 24386040 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028749.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24383618 24996541 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028750.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24385028 24996544 - MGP_C57BL6NJ_P0028750 5730522E02Rik protein_coding protein_coding MGP_C57BL6NJ_T0028751.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24401982 24418525 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028752.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24414381 24542205 - MGP_C57BL6NJ_P0028752 5730522E02Rik protein_coding protein_coding MGP_C57BL6NJ_T0028753.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24612875 24869440 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0028754.1 MGP_C57BL6NJ_G0018489.1 mouse_genomes_project 11 24892049 24996735 - 5730522E02Rik protein_coding processed_transcript MGP_C57BL6NJ_T0003413.1 MGP_C57BL6NJ_G0003142.1 mouse_genomes_project 11 100280827 100286352 + Gm11513 antisense antisense MGP_C57BL6NJ_T0029244.1 MGP_C57BL6NJ_G0018625.1 mouse_genomes_project 11 50264193 50307615 - MGP_C57BL6NJ_P0029244 Cnot6 protein_coding protein_coding MGP_C57BL6NJ_T0029245.1 MGP_C57BL6NJ_G0018625.1 mouse_genomes_project 11 50267388 50297769 - Cnot6 protein_coding processed_transcript MGP_C57BL6NJ_T0029246.1 MGP_C57BL6NJ_G0018625.1 mouse_genomes_project 11 50267403 50307602 - MGP_C57BL6NJ_P0029246 Cnot6 protein_coding protein_coding MGP_C57BL6NJ_T0029247.1 MGP_C57BL6NJ_G0018625.1 mouse_genomes_project 11 50270074 50272693 - Cnot6 protein_coding processed_transcript MGP_C57BL6NJ_T0029248.1 MGP_C57BL6NJ_G0018625.1 mouse_genomes_project 11 50273444 50275017 - Cnot6 protein_coding processed_transcript MGP_C57BL6NJ_T0033713.1 MGP_C57BL6NJ_G0019739.1 mouse_genomes_project 11 118193005 118205834 + MGP_C57BL6NJ_P0033713 Kcnj2 protein_coding protein_coding MGP_C57BL6NJ_T0006434.1 MGP_C57BL6NJ_G0005370.1 mouse_genomes_project 11 74436406 74447804 - Gm12324 lincRNA lincRNA MGP_C57BL6NJ_T0029136.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707738 46711669 + MGP_C57BL6NJ_P0029136 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029137.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707762 46711575 + MGP_C57BL6NJ_P0029137 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029138.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707765 46712338 + MGP_C57BL6NJ_P0029138 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029139.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707774 46713532 + MGP_C57BL6NJ_P0029139 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029140.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707784 46711911 + MGP_C57BL6NJ_P0029140 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029141.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707787 46713532 + MGP_C57BL6NJ_P0029141 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029142.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707791 46711861 + MGP_C57BL6NJ_P0029142 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0029143.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46707818 46710756 + Med7 protein_coding processed_transcript MGP_C57BL6NJ_T0029144.1 MGP_C57BL6NJ_G0018589.1 mouse_genomes_project 11 46710465 46711789 + MGP_C57BL6NJ_P0029144 Med7 protein_coding protein_coding MGP_C57BL6NJ_T0012825.1 MGP_C57BL6NJ_G0010870.1 mouse_genomes_project 11 20454368 20454932 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006403.1 MGP_C57BL6NJ_G0005344.1 mouse_genomes_project 11 52956675 52959925 - 9430098F02Rik lincRNA lincRNA MGP_C57BL6NJ_T0099322.1 MGP_C57BL6NJ_G0037385.1 mouse_genomes_project 11 70704090 70705412 - Gm12305 sense_intronic sense_intronic MGP_C57BL6NJ_T0006397.1 MGP_C57BL6NJ_G0005339.1 mouse_genomes_project 11 46919351 46927836 - Gm4926 lincRNA lincRNA MGP_C57BL6NJ_T0030414.1 MGP_C57BL6NJ_G0018922.1 mouse_genomes_project 11 71934090 71938142 - Cyb5d1 protein_coding processed_transcript MGP_C57BL6NJ_T0030415.1 MGP_C57BL6NJ_G0018922.1 mouse_genomes_project 11 71935425 71937844 - MGP_C57BL6NJ_P0030415 Cyb5d1 protein_coding protein_coding MGP_C57BL6NJ_T0030416.1 MGP_C57BL6NJ_G0018922.1 mouse_genomes_project 11 71935778 71937844 - MGP_C57BL6NJ_P0030416 Cyb5d1 protein_coding protein_coding MGP_C57BL6NJ_T0009969.1 MGP_C57BL6NJ_G0008054.1 mouse_genomes_project 11 128213012 128213099 + Mir3065 miRNA miRNA MGP_C57BL6NJ_T0034270.1 MGP_C57BL6NJ_G0019849.1 mouse_genomes_project 11 125873904 125878549 + MGP_C57BL6NJ_P0034270 Tmem235 protein_coding protein_coding MGP_C57BL6NJ_T0030159.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67147936 67171430 + MGP_C57BL6NJ_P0030159 Elac2 protein_coding protein_coding MGP_C57BL6NJ_T0030160.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67147969 67170689 + MGP_C57BL6NJ_P0030160 Elac2 protein_coding protein_coding MGP_C57BL6NJ_T0030161.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67147970 67149554 + Elac2 protein_coding processed_transcript MGP_C57BL6NJ_T0030162.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67147972 67170961 + MGP_C57BL6NJ_P0030162 Elac2 protein_coding protein_coding MGP_C57BL6NJ_T0030163.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67147989 67171428 + Elac2 protein_coding processed_transcript MGP_C57BL6NJ_T0030164.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67154366 67161400 + MGP_C57BL6NJ_P0030164 Elac2 protein_coding protein_coding MGP_C57BL6NJ_T0030165.1 MGP_C57BL6NJ_G0018865.1 mouse_genomes_project 11 67169696 67171249 + Elac2 protein_coding processed_transcript MGP_C57BL6NJ_T0009971.1 MGP_C57BL6NJ_G0008056.1 mouse_genomes_project 11 128499925 128500063 + miRNA miRNA MGP_C57BL6NJ_T0028375.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2988791 2998717 - MGP_C57BL6NJ_P0028375 Polm protein_coding protein_coding MGP_C57BL6NJ_T0028376.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2988792 2998944 - MGP_C57BL6NJ_P0028376 Polm protein_coding protein_coding MGP_C57BL6NJ_T0028377.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2990146 2991132 - Polm protein_coding processed_transcript MGP_C57BL6NJ_T0028378.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2995678 2997413 - Polm protein_coding processed_transcript MGP_C57BL6NJ_T0028379.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2997205 2998680 - Polm protein_coding processed_transcript MGP_C57BL6NJ_T0028380.1 MGP_C57BL6NJ_G0018401.1 mouse_genomes_project 11 2997228 2998721 - Polm protein_coding processed_transcript MGP_C57BL6NJ_T0033767.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122268847 122291072 + Kif19a protein_coding processed_transcript MGP_C57BL6NJ_T0033768.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122268847 122291072 + Kif19a protein_coding processed_transcript MGP_C57BL6NJ_T0033769.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122268847 122293028 + MGP_C57BL6NJ_P0033769 Kif19a protein_coding protein_coding MGP_C57BL6NJ_T0033770.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122268848 122295468 + MGP_C57BL6NJ_P0033770 Kif19a protein_coding protein_coding MGP_C57BL6NJ_T0033771.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122289551 122290460 + Kif19a protein_coding retained_intron MGP_C57BL6NJ_T0033772.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122292795 122295632 + MGP_C57BL6NJ_P0033772 Kif19a protein_coding protein_coding MGP_C57BL6NJ_T0033773.1 MGP_C57BL6NJ_G0019752.1 mouse_genomes_project 11 122292837 122294225 + Kif19a protein_coding retained_intron MGP_C57BL6NJ_T0012788.1 MGP_C57BL6NJ_G0010833.1 mouse_genomes_project 11 12922130 12923230 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031751.1 MGP_C57BL6NJ_G0019249.1 mouse_genomes_project 11 87613287 87615387 + MGP_C57BL6NJ_P0031751 Ccl4 protein_coding protein_coding MGP_C57BL6NJ_T0030520.1 MGP_C57BL6NJ_G0018949.1 mouse_genomes_project 11 72424795 72426100 - MGP_C57BL6NJ_P0030520 Spem1 protein_coding protein_coding MGP_C57BL6NJ_T0032340.1 MGP_C57BL6NJ_G0019394.1 mouse_genomes_project 11 101661425 101666564 + MGP_C57BL6NJ_P0032340 Hoxb9 protein_coding protein_coding MGP_C57BL6NJ_T0032341.1 MGP_C57BL6NJ_G0019394.1 mouse_genomes_project 11 101661491 101666564 + MGP_C57BL6NJ_P0032341 Hoxb9 protein_coding protein_coding MGP_C57BL6NJ_T0030109.1 MGP_C57BL6NJ_G0018850.1 mouse_genomes_project 11 64633430 64678205 - MGP_C57BL6NJ_P0030109 Lrrc75a protein_coding protein_coding MGP_C57BL6NJ_T0030110.1 MGP_C57BL6NJ_G0018850.1 mouse_genomes_project 11 64634369 64677722 - Lrrc75a protein_coding processed_transcript MGP_C57BL6NJ_T0030111.1 MGP_C57BL6NJ_G0018850.1 mouse_genomes_project 11 64634573 64677731 - Lrrc75a protein_coding processed_transcript MGP_C57BL6NJ_T0003450.1 MGP_C57BL6NJ_G0003171.1 mouse_genomes_project 11 108094209 108099179 + Gm11551 antisense antisense MGP_C57BL6NJ_T0033844.1 MGP_C57BL6NJ_G0019774.1 mouse_genomes_project 11 122992017 123004198 + MGP_C57BL6NJ_P0033844 Otop3 protein_coding protein_coding MGP_C57BL6NJ_T0033845.1 MGP_C57BL6NJ_G0019774.1 mouse_genomes_project 11 122992020 123004197 + MGP_C57BL6NJ_P0033845 Otop3 protein_coding protein_coding MGP_C57BL6NJ_T0033327.1 MGP_C57BL6NJ_G0019650.1 mouse_genomes_project 11 109560421 109570484 - MGP_C57BL6NJ_P0033327 1700023F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0033328.1 MGP_C57BL6NJ_G0019650.1 mouse_genomes_project 11 109560438 109564987 - MGP_C57BL6NJ_P0033328 1700023F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0033329.1 MGP_C57BL6NJ_G0019650.1 mouse_genomes_project 11 109560893 109570458 - MGP_C57BL6NJ_P0033329 1700023F06Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033330.1 MGP_C57BL6NJ_G0019650.1 mouse_genomes_project 11 109561802 109570459 - MGP_C57BL6NJ_P0033330 1700023F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0033331.1 MGP_C57BL6NJ_G0019650.1 mouse_genomes_project 11 109562843 109570484 - 1700023F06Rik protein_coding retained_intron MGP_C57BL6NJ_T0012810.1 MGP_C57BL6NJ_G0010855.1 mouse_genomes_project 11 18798553 18800069 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102765.1 MGP_C57BL6NJ_G0040560.1 mouse_genomes_project 11 105549057 105549194 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101071.1 MGP_C57BL6NJ_G0039117.1 mouse_genomes_project 11 91771178 91771393 + Rnu3b1 snoRNA snoRNA MGP_C57BL6NJ_T0030909.1 MGP_C57BL6NJ_G0019024.1 mouse_genomes_project 11 75027683 75031915 - MGP_C57BL6NJ_P0030909 Med31 protein_coding protein_coding MGP_C57BL6NJ_T0030910.1 MGP_C57BL6NJ_G0019024.1 mouse_genomes_project 11 75029167 75031376 - Med31 protein_coding retained_intron MGP_C57BL6NJ_T0034687.1 MGP_C57BL6NJ_G0019932.1 mouse_genomes_project 11 129528906 129555678 - MGP_C57BL6NJ_P0034687 Ogfod3 protein_coding protein_coding MGP_C57BL6NJ_T0028593.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17048390 17196580 - MGP_C57BL6NJ_P0028593 Meis1 protein_coding protein_coding MGP_C57BL6NJ_T0028594.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17049001 17196309 - MGP_C57BL6NJ_P0028594 Meis1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028595.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17049001 17196564 - MGP_C57BL6NJ_P0028595 Meis1 protein_coding protein_coding MGP_C57BL6NJ_T0028596.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17049235 17196553 - MGP_C57BL6NJ_P0028596 Meis1 protein_coding protein_coding MGP_C57BL6NJ_T0028597.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17049241 17189560 - Meis1 protein_coding processed_transcript MGP_C57BL6NJ_T0028598.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17049248 17196309 - MGP_C57BL6NJ_P0028598 Meis1 protein_coding protein_coding MGP_C57BL6NJ_T0028599.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17050003 17193884 - MGP_C57BL6NJ_P0028599 Meis1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028600.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17164105 17196517 - Meis1 protein_coding retained_intron MGP_C57BL6NJ_T0028601.1 MGP_C57BL6NJ_G0018454.1 mouse_genomes_project 11 17187217 17196517 - Meis1 protein_coding retained_intron MGP_C57BL6NJ_T0029108.1 MGP_C57BL6NJ_G0018579.1 mouse_genomes_project 11 46060563 46122697 + MGP_C57BL6NJ_P0029108 Clint1 protein_coding protein_coding MGP_C57BL6NJ_T0029109.1 MGP_C57BL6NJ_G0018579.1 mouse_genomes_project 11 46060563 46122697 + MGP_C57BL6NJ_P0029109 Clint1 protein_coding protein_coding MGP_C57BL6NJ_T0029110.1 MGP_C57BL6NJ_G0018579.1 mouse_genomes_project 11 46095385 46122697 + Clint1 protein_coding processed_transcript MGP_C57BL6NJ_T0032669.1 MGP_C57BL6NJ_G0019472.1 mouse_genomes_project 11 104732056 104732893 - MGP_C57BL6NJ_P0032669 Gjd3 protein_coding protein_coding MGP_C57BL6NJ_T0006442.1 MGP_C57BL6NJ_G0005376.1 mouse_genomes_project 11 78938587 78956711 - Gm26836 lincRNA lincRNA MGP_C57BL6NJ_T0003475.1 MGP_C57BL6NJ_G0003194.1 mouse_genomes_project 11 114226022 114229182 + Gm11713 antisense antisense MGP_C57BL6NJ_T0003289.1 MGP_C57BL6NJ_G0003040.1 mouse_genomes_project 11 33040650 33042665 + Gm12119 antisense antisense MGP_C57BL6NJ_T0030579.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72557770 72563407 - Slc2a4 protein_coding retained_intron MGP_C57BL6NJ_T0030580.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72558600 72563213 - MGP_C57BL6NJ_P0030580 Slc2a4 protein_coding protein_coding MGP_C57BL6NJ_T0030581.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72559023 72563396 - MGP_C57BL6NJ_P0030581 Slc2a4 protein_coding protein_coding MGP_C57BL6NJ_T0030582.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72560500 72563379 - MGP_C57BL6NJ_P0030582 Slc2a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030583.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72560500 72563206 - MGP_C57BL6NJ_P0030583 Slc2a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030584.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72560794 72563377 - MGP_C57BL6NJ_P0030584 Slc2a4 protein_coding protein_coding MGP_C57BL6NJ_T0030585.1 MGP_C57BL6NJ_G0018962.1 mouse_genomes_project 11 72561300 72563386 - MGP_C57BL6NJ_P0030585 Slc2a4 protein_coding protein_coding MGP_C57BL6NJ_T0003390.1 MGP_C57BL6NJ_G0003127.1 mouse_genomes_project 11 85100572 85117993 + 4930527B05Rik antisense antisense MGP_C57BL6NJ_T0031152.1 MGP_C57BL6NJ_G0019103.1 mouse_genomes_project 11 78572379 78587078 - MGP_C57BL6NJ_P0031152 Wdr81 protein_coding protein_coding MGP_C57BL6NJ_T0031153.1 MGP_C57BL6NJ_G0019103.1 mouse_genomes_project 11 78572383 78583722 - MGP_C57BL6NJ_P0031153 Wdr81 protein_coding protein_coding MGP_C57BL6NJ_T0031154.1 MGP_C57BL6NJ_G0019103.1 mouse_genomes_project 11 78579600 78581214 - Wdr81 protein_coding processed_transcript MGP_C57BL6NJ_T0033315.1 MGP_C57BL6NJ_G0019648.1 mouse_genomes_project 11 109485024 109494844 + MGP_C57BL6NJ_P0033315 Hexim2 protein_coding protein_coding MGP_C57BL6NJ_T0033316.1 MGP_C57BL6NJ_G0019648.1 mouse_genomes_project 11 109486533 109495537 + MGP_C57BL6NJ_P0033316 Hexim2 protein_coding protein_coding MGP_C57BL6NJ_T0033317.1 MGP_C57BL6NJ_G0019648.1 mouse_genomes_project 11 109486558 109494992 + MGP_C57BL6NJ_P0033317 Hexim2 protein_coding protein_coding MGP_C57BL6NJ_T0033318.1 MGP_C57BL6NJ_G0019648.1 mouse_genomes_project 11 109486564 109496222 + MGP_C57BL6NJ_P0033318 Hexim2 protein_coding protein_coding MGP_C57BL6NJ_T0033319.1 MGP_C57BL6NJ_G0019648.1 mouse_genomes_project 11 109487084 109494625 + MGP_C57BL6NJ_P0033319 Hexim2 protein_coding protein_coding MGP_C57BL6NJ_T0006357.1 MGP_C57BL6NJ_G0005307.1 mouse_genomes_project 11 23190237 23273316 + 4933430M04Rik lincRNA lincRNA MGP_C57BL6NJ_T0029422.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823309 52852842 + MGP_C57BL6NJ_P0029422 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029423.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823309 52857205 + MGP_C57BL6NJ_P0029423 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029424.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823309 52859633 + MGP_C57BL6NJ_P0029424 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029425.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823309 52857205 + MGP_C57BL6NJ_P0029425 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029426.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823313 52846603 + MGP_C57BL6NJ_P0029426 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029427.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823329 52852909 + MGP_C57BL6NJ_P0029427 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029428.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823342 52838515 + MGP_C57BL6NJ_P0029428 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029429.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823353 52881282 + MGP_C57BL6NJ_P0029429 Cdkl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029430.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823371 52867990 + MGP_C57BL6NJ_P0029430 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029431.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52823378 52857205 + MGP_C57BL6NJ_P0029431 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029432.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52845829 52914537 + MGP_C57BL6NJ_P0029432 Cdkl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029433.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52846053 52852764 + MGP_C57BL6NJ_P0029433 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029434.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52851401 52919206 + MGP_C57BL6NJ_P0029434 Cdkl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029435.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52851486 52919212 + MGP_C57BL6NJ_P0029435 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0029436.1 MGP_C57BL6NJ_G0018670.1 mouse_genomes_project 11 52852566 52919204 + MGP_C57BL6NJ_P0029436 Cdkl3 protein_coding protein_coding MGP_C57BL6NJ_T0028358.1 MGP_C57BL6NJ_G0018395.1 mouse_genomes_project 11 2660797 2675908 - MGP_C57BL6NJ_P0028358 Ccdc117 protein_coding protein_coding MGP_C57BL6NJ_T0012912.1 MGP_C57BL6NJ_G0010957.1 mouse_genomes_project 11 55271705 55272836 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098968.1 MGP_C57BL6NJ_G0037032.1 mouse_genomes_project 11 90626771 90626891 + Gm23667 rRNA rRNA MGP_C57BL6NJ_T0034249.1 MGP_C57BL6NJ_G0019844.1 mouse_genomes_project 11 125817877 125849811 + MGP_C57BL6NJ_P0034249 Gm20708 protein_coding protein_coding MGP_C57BL6NJ_T0013044.1 MGP_C57BL6NJ_G0011089.1 mouse_genomes_project 11 107620657 107620953 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003294.1 MGP_C57BL6NJ_G0003045.1 mouse_genomes_project 11 43233681 43299877 - Gm12146 antisense antisense MGP_C57BL6NJ_T0033606.1 MGP_C57BL6NJ_G0019716.1 mouse_genomes_project 11 114733008 114770616 - MGP_C57BL6NJ_P0033606 Cacng5 protein_coding protein_coding MGP_C57BL6NJ_T0033607.1 MGP_C57BL6NJ_G0019716.1 mouse_genomes_project 11 114733074 114774307 - MGP_C57BL6NJ_P0033607 Cacng5 protein_coding protein_coding MGP_C57BL6NJ_T0029729.1 MGP_C57BL6NJ_G0018759.1 mouse_genomes_project 11 60314961 60316465 - MGP_C57BL6NJ_P0029729 protein_coding protein_coding MGP_C57BL6NJ_T0030837.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73713845 73721466 + MGP_C57BL6NJ_P0030837 Rpain protein_coding protein_coding MGP_C57BL6NJ_T0030838.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73713859 73715552 + MGP_C57BL6NJ_P0030838 Rpain protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030839.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714112 73717795 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0030840.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714118 73715982 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0030841.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714123 73717124 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0030842.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714139 73721320 + MGP_C57BL6NJ_P0030842 Rpain protein_coding protein_coding MGP_C57BL6NJ_T0030843.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714139 73721320 + MGP_C57BL6NJ_P0030843 Rpain protein_coding protein_coding MGP_C57BL6NJ_T0030844.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714139 73721320 + MGP_C57BL6NJ_P0030844 Rpain protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030845.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714139 73721320 + MGP_C57BL6NJ_P0030845 Rpain protein_coding protein_coding MGP_C57BL6NJ_T0030846.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714139 73721320 + MGP_C57BL6NJ_P0030846 Rpain protein_coding protein_coding MGP_C57BL6NJ_T0030847.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73714161 73718062 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0030848.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73716435 73721438 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0030849.1 MGP_C57BL6NJ_G0019010.1 mouse_genomes_project 11 73718372 73721434 + Rpain protein_coding retained_intron MGP_C57BL6NJ_T0012753.1 MGP_C57BL6NJ_G0010798.1 mouse_genomes_project 11 998311 998660 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032714.1 MGP_C57BL6NJ_G0019493.1 mouse_genomes_project 11 105387760 105388801 - MGP_C57BL6NJ_P0032714 Krtap1-5 protein_coding protein_coding MGP_C57BL6NJ_T0033279.1 MGP_C57BL6NJ_G0019640.1 mouse_genomes_project 11 109196336 109207107 - MGP_C57BL6NJ_P0033279 Gfap protein_coding protein_coding MGP_C57BL6NJ_T0033280.1 MGP_C57BL6NJ_G0019640.1 mouse_genomes_project 11 109199166 109207176 - MGP_C57BL6NJ_P0033280 Gfap protein_coding protein_coding MGP_C57BL6NJ_T0033281.1 MGP_C57BL6NJ_G0019640.1 mouse_genomes_project 11 109204462 109210888 - Gfap protein_coding processed_transcript MGP_C57BL6NJ_T0017634.1 MGP_C57BL6NJ_G0015551.1 mouse_genomes_project 11 21421280 21423605 + 9130230N09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0031296.1 MGP_C57BL6NJ_G0019134.1 mouse_genomes_project 11 80364956 80401485 - MGP_C57BL6NJ_P0031296 Nsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0031297.1 MGP_C57BL6NJ_G0019134.1 mouse_genomes_project 11 80371295 80401087 - MGP_C57BL6NJ_P0031297 Nsrp1 protein_coding protein_coding MGP_C57BL6NJ_T0031298.1 MGP_C57BL6NJ_G0019134.1 mouse_genomes_project 11 80376597 80401485 - Nsrp1 protein_coding processed_transcript MGP_C57BL6NJ_T0034671.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129385794 129395561 - MGP_C57BL6NJ_P0034671 Sectm1b protein_coding protein_coding MGP_C57BL6NJ_T0034672.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129386867 129395530 - MGP_C57BL6NJ_P0034672 Sectm1b protein_coding protein_coding MGP_C57BL6NJ_T0034673.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129386872 129388700 - MGP_C57BL6NJ_P0034673 Sectm1b protein_coding protein_coding MGP_C57BL6NJ_T0034674.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129386918 129395537 - MGP_C57BL6NJ_P0034674 Sectm1b protein_coding protein_coding MGP_C57BL6NJ_T0034675.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129387293 129395447 - MGP_C57BL6NJ_P0034675 Sectm1b protein_coding protein_coding MGP_C57BL6NJ_T0034676.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129387748 129395295 - Sectm1b protein_coding retained_intron MGP_C57BL6NJ_T0034677.1 MGP_C57BL6NJ_G0019927.1 mouse_genomes_project 11 129388570 129388965 - Sectm1b protein_coding processed_transcript MGP_C57BL6NJ_T0012995.1 MGP_C57BL6NJ_G0011040.1 mouse_genomes_project 11 84746483 84748461 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009860.1 MGP_C57BL6NJ_G0007945.1 mouse_genomes_project 11 35232760 35232846 + Mir103-1 miRNA miRNA MGP_C57BL6NJ_T0033396.1 MGP_C57BL6NJ_G0019668.1 mouse_genomes_project 11 110982318 111041903 - MGP_C57BL6NJ_P0033396 Cdc27 protein_coding protein_coding MGP_C57BL6NJ_T0033397.1 MGP_C57BL6NJ_G0019668.1 mouse_genomes_project 11 110984510 111041812 - MGP_C57BL6NJ_P0033397 Cdc27 protein_coding protein_coding MGP_C57BL6NJ_T0033398.1 MGP_C57BL6NJ_G0019668.1 mouse_genomes_project 11 110987920 110999075 - Cdc27 protein_coding processed_transcript MGP_C57BL6NJ_T0033399.1 MGP_C57BL6NJ_G0019668.1 mouse_genomes_project 11 111006050 111041898 - MGP_C57BL6NJ_P0033399 Cdc27 protein_coding protein_coding MGP_C57BL6NJ_T0033400.1 MGP_C57BL6NJ_G0019668.1 mouse_genomes_project 11 111019033 111042040 - Cdc27 protein_coding processed_transcript MGP_C57BL6NJ_T0099741.1 MGP_C57BL6NJ_G0037787.1 mouse_genomes_project 11 22097765 22097872 - Gm22753 snRNA snRNA MGP_C57BL6NJ_T0034262.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125833942 125849815 + MGP_C57BL6NJ_P0034262 Afmid protein_coding protein_coding MGP_C57BL6NJ_T0034263.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125833992 125847141 + MGP_C57BL6NJ_P0034263 Afmid protein_coding protein_coding MGP_C57BL6NJ_T0034264.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125833999 125840669 + Afmid protein_coding retained_intron MGP_C57BL6NJ_T0034265.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125840122 125845324 + Afmid protein_coding retained_intron MGP_C57BL6NJ_T0034266.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125840248 125847138 + Afmid protein_coding retained_intron MGP_C57BL6NJ_T0034267.1 MGP_C57BL6NJ_G0019847.1 mouse_genomes_project 11 125840291 125845431 + Afmid protein_coding retained_intron MGP_C57BL6NJ_T0099757.1 MGP_C57BL6NJ_G0037803.1 mouse_genomes_project 11 63238735 63238842 + Gm25929 snRNA snRNA MGP_C57BL6NJ_T0030425.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 71966556 72111339 - MGP_C57BL6NJ_P0030425 Dnah2 protein_coding protein_coding MGP_C57BL6NJ_T0030426.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 71966556 72115892 - MGP_C57BL6NJ_P0030426 Dnah2 protein_coding protein_coding MGP_C57BL6NJ_T0030427.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 71966740 72113311 - MGP_C57BL6NJ_P0030427 Dnah2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030428.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 72013026 72014111 - Dnah2 protein_coding processed_transcript MGP_C57BL6NJ_T0030429.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 72073762 72115894 - Dnah2 protein_coding processed_transcript MGP_C57BL6NJ_T0030430.1 MGP_C57BL6NJ_G0018926.1 mouse_genomes_project 11 72079103 72079852 - Dnah2 protein_coding processed_transcript MGP_C57BL6NJ_T0031709.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87211826 87216162 - MGP_C57BL6NJ_P0031709 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0031710.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87212259 87216080 - MGP_C57BL6NJ_P0031710 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0031711.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87212259 87216127 - MGP_C57BL6NJ_P0031711 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0031712.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87212260 87216082 - MGP_C57BL6NJ_P0031712 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0031713.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87215088 87216123 - Pex12 protein_coding processed_transcript MGP_C57BL6NJ_T0031714.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87215214 87219771 - MGP_C57BL6NJ_P0031714 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0031715.1 MGP_C57BL6NJ_G0019236.1 mouse_genomes_project 11 87215513 87216143 - MGP_C57BL6NJ_P0031715 Pex12 protein_coding protein_coding MGP_C57BL6NJ_T0006390.1 MGP_C57BL6NJ_G0005334.1 mouse_genomes_project 11 45267189 45282784 - Gm12159 lincRNA lincRNA MGP_C57BL6NJ_T0029663.1 MGP_C57BL6NJ_G0018731.1 mouse_genomes_project 11 59194931 59203433 + MGP_C57BL6NJ_P0029663 Sap30l protein_coding protein_coding MGP_C57BL6NJ_T0032493.1 MGP_C57BL6NJ_G0019432.1 mouse_genomes_project 11 103264850 103297672 - MGP_C57BL6NJ_P0032493 Pip4k2b protein_coding protein_coding MGP_C57BL6NJ_T0032494.1 MGP_C57BL6NJ_G0019432.1 mouse_genomes_project 11 103270089 103277493 - Pip4k2b protein_coding processed_transcript MGP_C57BL6NJ_T0013055.1 MGP_C57BL6NJ_G0011100.1 mouse_genomes_project 11 111181796 111184586 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006448.1 MGP_C57BL6NJ_G0005382.1 mouse_genomes_project 11 83381928 83382837 - 9130204K15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006449.1 MGP_C57BL6NJ_G0005382.1 mouse_genomes_project 11 83381995 83486149 - 9130204K15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006450.1 MGP_C57BL6NJ_G0005382.1 mouse_genomes_project 11 83382458 83471986 - 9130204K15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006451.1 MGP_C57BL6NJ_G0005382.1 mouse_genomes_project 11 83395690 83406600 - 9130204K15Rik lincRNA lincRNA MGP_C57BL6NJ_T0012990.1 MGP_C57BL6NJ_G0011035.1 mouse_genomes_project 11 82938691 82939665 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032738.1 MGP_C57BL6NJ_G0019516.1 mouse_genomes_project 11 105704123 105704949 + MGP_C57BL6NJ_P0032738 protein_coding protein_coding MGP_C57BL6NJ_T0099241.1 MGP_C57BL6NJ_G0037305.1 mouse_genomes_project 11 9533549 9533677 - Gm25058 scaRNA scaRNA MGP_C57BL6NJ_T0032132.1 MGP_C57BL6NJ_G0019341.1 mouse_genomes_project 11 98982589 98995894 - MGP_C57BL6NJ_P0032132 Nme1 protein_coding protein_coding MGP_C57BL6NJ_T0032133.1 MGP_C57BL6NJ_G0019341.1 mouse_genomes_project 11 98985082 98993416 - MGP_C57BL6NJ_P0032133 Nme1 protein_coding protein_coding MGP_C57BL6NJ_T0032134.1 MGP_C57BL6NJ_G0019341.1 mouse_genomes_project 11 98986187 98995645 - MGP_C57BL6NJ_P0032134 Nme1 protein_coding protein_coding MGP_C57BL6NJ_T0003399.1 MGP_C57BL6NJ_G0003133.1 mouse_genomes_project 11 89943308 89952160 - Bcas3os2 antisense antisense MGP_C57BL6NJ_T0009925.1 MGP_C57BL6NJ_G0008010.1 mouse_genomes_project 11 92104790 92104854 + Mir142 miRNA miRNA MGP_C57BL6NJ_T0033337.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109698458 109732171 - MGP_C57BL6NJ_P0033337 Arhgap27 protein_coding protein_coding MGP_C57BL6NJ_T0033338.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109698459 109735087 - Arhgap27 protein_coding retained_intron MGP_C57BL6NJ_T0033339.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109698461 109716049 - MGP_C57BL6NJ_P0033339 Arhgap27 protein_coding protein_coding MGP_C57BL6NJ_T0033340.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109700127 109701072 - Arhgap27 protein_coding retained_intron MGP_C57BL6NJ_T0033341.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109700190 109700357 - Arhgap27 protein_coding processed_transcript MGP_C57BL6NJ_T0033342.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109700426 109701051 - Arhgap27 protein_coding retained_intron MGP_C57BL6NJ_T0033343.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109702229 109711074 - Arhgap27 protein_coding retained_intron MGP_C57BL6NJ_T0033344.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109706030 109710658 - Arhgap27 protein_coding retained_intron MGP_C57BL6NJ_T0033345.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109710583 109727634 - MGP_C57BL6NJ_P0033345 Arhgap27 protein_coding protein_coding MGP_C57BL6NJ_T0033346.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109711489 109727648 - MGP_C57BL6NJ_P0033346 Arhgap27 protein_coding protein_coding MGP_C57BL6NJ_T0033347.1 MGP_C57BL6NJ_G0019653.1 mouse_genomes_project 11 109731009 109734859 - MGP_C57BL6NJ_P0033347 Arhgap27 protein_coding protein_coding MGP_C57BL6NJ_T0029249.1 MGP_C57BL6NJ_G0018626.1 mouse_genomes_project 11 50394679 50408011 + Gfpt2 protein_coding retained_intron MGP_C57BL6NJ_T0029250.1 MGP_C57BL6NJ_G0018626.1 mouse_genomes_project 11 50394688 50440810 + MGP_C57BL6NJ_P0029250 Gfpt2 protein_coding protein_coding MGP_C57BL6NJ_T0011558.1 MGP_C57BL6NJ_G0009643.1 mouse_genomes_project 11 52031795 52032050 + Gm25082 misc_RNA misc_RNA MGP_C57BL6NJ_T0031200.1 MGP_C57BL6NJ_G0019112.1 mouse_genomes_project 11 78864349 78894525 + MGP_C57BL6NJ_P0031200 Crk protein_coding protein_coding MGP_C57BL6NJ_T0031201.1 MGP_C57BL6NJ_G0019112.1 mouse_genomes_project 11 78864374 78895368 + MGP_C57BL6NJ_P0031201 Crk protein_coding protein_coding MGP_C57BL6NJ_T0031202.1 MGP_C57BL6NJ_G0019112.1 mouse_genomes_project 11 78864374 78892115 + MGP_C57BL6NJ_P0031202 Crk protein_coding protein_coding MGP_C57BL6NJ_T0031203.1 MGP_C57BL6NJ_G0019112.1 mouse_genomes_project 11 78864401 78889249 + MGP_C57BL6NJ_P0031203 Crk protein_coding protein_coding MGP_C57BL6NJ_T0031204.1 MGP_C57BL6NJ_G0019112.1 mouse_genomes_project 11 78864632 78889197 + MGP_C57BL6NJ_P0031204 Crk protein_coding protein_coding MGP_C57BL6NJ_T0101010.1 MGP_C57BL6NJ_G0039056.1 mouse_genomes_project 11 3760120 3760253 - Snora9 snoRNA snoRNA MGP_C57BL6NJ_T0006480.1 MGP_C57BL6NJ_G0005402.1 mouse_genomes_project 11 95556740 95660679 + 4930405D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006481.1 MGP_C57BL6NJ_G0005402.1 mouse_genomes_project 11 95640634 95660623 + 4930405D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006482.1 MGP_C57BL6NJ_G0005402.1 mouse_genomes_project 11 95640659 95660529 + 4930405D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0034429.1 MGP_C57BL6NJ_G0019881.1 mouse_genomes_project 11 128267239 128294788 - MGP_C57BL6NJ_P0034429 Cep131 protein_coding protein_coding MGP_C57BL6NJ_T0034430.1 MGP_C57BL6NJ_G0019881.1 mouse_genomes_project 11 128267243 128267778 - Cep131 protein_coding processed_transcript MGP_C57BL6NJ_T0034431.1 MGP_C57BL6NJ_G0019881.1 mouse_genomes_project 11 128267448 128270867 - Cep131 protein_coding processed_transcript MGP_C57BL6NJ_T0034432.1 MGP_C57BL6NJ_G0019881.1 mouse_genomes_project 11 128269938 128273717 - Cep131 protein_coding processed_transcript MGP_C57BL6NJ_T0034433.1 MGP_C57BL6NJ_G0019881.1 mouse_genomes_project 11 128270898 128274832 - Cep131 protein_coding processed_transcript MGP_C57BL6NJ_T0006524.1 MGP_C57BL6NJ_G0005433.1 mouse_genomes_project 11 121651034 121652319 + Gm11691 lincRNA lincRNA MGP_C57BL6NJ_T0031401.1 MGP_C57BL6NJ_G0019153.1 mouse_genomes_project 11 81510997 81524563 - Eral1 protein_coding retained_intron MGP_C57BL6NJ_T0031402.1 MGP_C57BL6NJ_G0019153.1 mouse_genomes_project 11 81510997 81524563 - MGP_C57BL6NJ_P0031402 Eral1 protein_coding protein_coding MGP_C57BL6NJ_T0031403.1 MGP_C57BL6NJ_G0019153.1 mouse_genomes_project 11 81512152 81513593 - Eral1 protein_coding retained_intron MGP_C57BL6NJ_T0028369.1 MGP_C57BL6NJ_G0018398.1 mouse_genomes_project 11 2860404 2890518 - MGP_C57BL6NJ_P0028369 Urgcp protein_coding protein_coding MGP_C57BL6NJ_T0028370.1 MGP_C57BL6NJ_G0018398.1 mouse_genomes_project 11 2862756 2890554 - MGP_C57BL6NJ_P0028370 Urgcp protein_coding protein_coding MGP_C57BL6NJ_T0017727.1 MGP_C57BL6NJ_G0015607.1 mouse_genomes_project 11 111965396 111993915 + Gm11638 processed_transcript processed_transcript MGP_C57BL6NJ_T0099794.1 MGP_C57BL6NJ_G0037840.1 mouse_genomes_project 11 104590887 104590991 - Gm23640 snRNA snRNA MGP_C57BL6NJ_T0031538.1 MGP_C57BL6NJ_G0019187.1 mouse_genomes_project 11 82859870 82862481 - MGP_C57BL6NJ_P0031538 Gm9964 protein_coding protein_coding MGP_C57BL6NJ_T0006335.1 MGP_C57BL6NJ_G0005286.1 mouse_genomes_project 11 12385405 12428001 - 1700046C09Rik lincRNA lincRNA MGP_C57BL6NJ_T0028678.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560056 21573309 + MGP_C57BL6NJ_P0028678 Cct4 protein_coding protein_coding MGP_C57BL6NJ_T0028679.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560163 21563918 + MGP_C57BL6NJ_P0028679 Cct4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028680.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560176 21569405 + Cct4 protein_coding retained_intron MGP_C57BL6NJ_T0028681.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560187 21566625 + MGP_C57BL6NJ_P0028681 Cct4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028682.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560187 21572680 + MGP_C57BL6NJ_P0028682 Cct4 protein_coding protein_coding MGP_C57BL6NJ_T0028683.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21560189 21566678 + MGP_C57BL6NJ_P0028683 Cct4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028684.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21565152 21566630 + Cct4 protein_coding retained_intron MGP_C57BL6NJ_T0028685.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21570465 21571148 + Cct4 protein_coding processed_transcript MGP_C57BL6NJ_T0028686.1 MGP_C57BL6NJ_G0018476.1 mouse_genomes_project 11 21571462 21572384 + Cct4 protein_coding retained_intron MGP_C57BL6NJ_T0099772.1 MGP_C57BL6NJ_G0037818.1 mouse_genomes_project 11 83184672 83184776 + Gm23293 snRNA snRNA MGP_C57BL6NJ_T0031704.1 MGP_C57BL6NJ_G0019232.1 mouse_genomes_project 11 86976959 86982781 + MGP_C57BL6NJ_P0031704 Slfn1 protein_coding protein_coding MGP_C57BL6NJ_T0030958.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75669244 75733691 + Zzef1 protein_coding retained_intron MGP_C57BL6NJ_T0030959.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75669244 75808566 + MGP_C57BL6NJ_P0030959 Zzef1 protein_coding protein_coding MGP_C57BL6NJ_T0030960.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75669272 75808564 + MGP_C57BL6NJ_P0030960 Zzef1 protein_coding protein_coding MGP_C57BL6NJ_T0030961.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75713965 75806164 + MGP_C57BL6NJ_P0030961 Zzef1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030962.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75723261 75733056 + Zzef1 protein_coding processed_transcript MGP_C57BL6NJ_T0030963.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75793732 75807257 + Zzef1 protein_coding retained_intron MGP_C57BL6NJ_T0030964.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75796379 75800333 + Zzef1 protein_coding retained_intron MGP_C57BL6NJ_T0030965.1 MGP_C57BL6NJ_G0019037.1 mouse_genomes_project 11 75802279 75808566 + Zzef1 protein_coding retained_intron MGP_C57BL6NJ_T0017653.1 MGP_C57BL6NJ_G0015564.1 mouse_genomes_project 11 59187289 59194712 - 2010001A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017654.1 MGP_C57BL6NJ_G0015564.1 mouse_genomes_project 11 59187309 59194709 - 2010001A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017655.1 MGP_C57BL6NJ_G0015564.1 mouse_genomes_project 11 59187396 59194693 - 2010001A14Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0028113.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 161100 177380 - MGP_C57BL6NJ_P0028113 Drg1 protein_coding protein_coding MGP_C57BL6NJ_T0028114.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 161290 164053 - Drg1 protein_coding retained_intron MGP_C57BL6NJ_T0028115.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 165604 173531 - Drg1 protein_coding retained_intron MGP_C57BL6NJ_T0028116.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 167551 177379 - Drg1 protein_coding processed_transcript MGP_C57BL6NJ_T0028117.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 168724 177402 - Drg1 protein_coding retained_intron MGP_C57BL6NJ_T0028118.1 MGP_C57BL6NJ_G0018347.1 mouse_genomes_project 11 170321 177380 - MGP_C57BL6NJ_P0028118 Drg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013013.1 MGP_C57BL6NJ_G0011058.1 mouse_genomes_project 11 92334010 92334422 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009929.1 MGP_C57BL6NJ_G0008014.1 mouse_genomes_project 11 101652049 101652151 + Mir196a-1 miRNA miRNA MGP_C57BL6NJ_T0101067.1 MGP_C57BL6NJ_G0039113.1 mouse_genomes_project 11 91736481 91736696 + Rnu3b2 snoRNA snoRNA MGP_C57BL6NJ_T0012973.1 MGP_C57BL6NJ_G0011018.1 mouse_genomes_project 11 76838555 76840375 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033679.1 MGP_C57BL6NJ_G0019731.1 mouse_genomes_project 11 116796270 116836381 - MGP_C57BL6NJ_P0033679 1700012B07Rik protein_coding protein_coding MGP_C57BL6NJ_T0033680.1 MGP_C57BL6NJ_G0019731.1 mouse_genomes_project 11 116800158 116836357 - MGP_C57BL6NJ_P0033680 1700012B07Rik protein_coding protein_coding MGP_C57BL6NJ_T0033681.1 MGP_C57BL6NJ_G0019731.1 mouse_genomes_project 11 116800199 116822736 - MGP_C57BL6NJ_P0033681 1700012B07Rik protein_coding protein_coding MGP_C57BL6NJ_T0031481.1 MGP_C57BL6NJ_G0019170.1 mouse_genomes_project 11 81874333 81899779 - MGP_C57BL6NJ_P0031481 Slc13a2 protein_coding protein_coding MGP_C57BL6NJ_T0012066.1 MGP_C57BL6NJ_G0010148.1 mouse_genomes_project 11 77244333 77245305 + MGP_C57BL6NJ_P0012066 Olfr404-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0006476.1 MGP_C57BL6NJ_G0005398.1 mouse_genomes_project 11 93546193 93549778 - Gm11496 lincRNA lincRNA MGP_C57BL6NJ_T0029968.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63108902 63152542 - MGP_C57BL6NJ_P0029968 Aldh3a2 protein_coding protein_coding MGP_C57BL6NJ_T0029969.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63130664 63152363 - MGP_C57BL6NJ_P0029969 Aldh3a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029970.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63130673 63152542 - MGP_C57BL6NJ_P0029970 Aldh3a2 protein_coding protein_coding MGP_C57BL6NJ_T0029971.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63133347 63152542 - MGP_C57BL6NJ_P0029971 Aldh3a2 protein_coding protein_coding MGP_C57BL6NJ_T0029972.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63134892 63147692 - Aldh3a2 protein_coding processed_transcript MGP_C57BL6NJ_T0029973.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63142655 63152821 - Aldh3a2 protein_coding processed_transcript MGP_C57BL6NJ_T0029974.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63149526 63152484 - Aldh3a2 protein_coding processed_transcript MGP_C57BL6NJ_T0029975.1 MGP_C57BL6NJ_G0018827.1 mouse_genomes_project 11 63150580 63152798 - Aldh3a2 protein_coding processed_transcript MGP_C57BL6NJ_T0032962.1 MGP_C57BL6NJ_G0019581.1 mouse_genomes_project 11 107341351 107371089 + MGP_C57BL6NJ_P0032962 Wnk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032963.1 MGP_C57BL6NJ_G0019581.1 mouse_genomes_project 11 107341382 107371089 + MGP_C57BL6NJ_P0032963 Wnk4 protein_coding protein_coding MGP_C57BL6NJ_T0032964.1 MGP_C57BL6NJ_G0019581.1 mouse_genomes_project 11 107341439 107370954 + MGP_C57BL6NJ_P0032964 Wnk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032965.1 MGP_C57BL6NJ_G0019581.1 mouse_genomes_project 11 107357275 107367809 + MGP_C57BL6NJ_P0032965 Wnk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0032966.1 MGP_C57BL6NJ_G0019581.1 mouse_genomes_project 11 107370325 107371086 + MGP_C57BL6NJ_P0032966 Wnk4 protein_coding protein_coding MGP_C57BL6NJ_T0003313.1 MGP_C57BL6NJ_G0003063.1 mouse_genomes_project 11 54733664 54734330 - Gm12214 antisense antisense MGP_C57BL6NJ_T0033421.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111767364 111878231 + MGP_C57BL6NJ_P0033421 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033422.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111769303 111803932 + Tlk2 protein_coding retained_intron MGP_C57BL6NJ_T0033423.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111770364 111870736 + MGP_C57BL6NJ_P0033423 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033424.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111770488 111876449 + MGP_C57BL6NJ_P0033424 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033425.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111770553 111871150 + MGP_C57BL6NJ_P0033425 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033426.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111770570 111876449 + MGP_C57BL6NJ_P0033426 Tlk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033427.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111770788 111804635 + MGP_C57BL6NJ_P0033427 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033428.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111771001 111876454 + MGP_C57BL6NJ_P0033428 Tlk2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033429.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111801486 111833234 + Tlk2 protein_coding retained_intron MGP_C57BL6NJ_T0033430.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111802929 111842070 + MGP_C57BL6NJ_P0033430 Tlk2 protein_coding protein_coding MGP_C57BL6NJ_T0033431.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111839341 111840258 + Tlk2 protein_coding retained_intron MGP_C57BL6NJ_T0033432.1 MGP_C57BL6NJ_G0019675.1 mouse_genomes_project 11 111845121 111864330 + Tlk2 protein_coding processed_transcript MGP_C57BL6NJ_T0028687.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21577059 21589685 + MGP_C57BL6NJ_P0028687 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0028688.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21577875 21593178 + MGP_C57BL6NJ_P0028688 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0028689.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21577993 21593195 + MGP_C57BL6NJ_P0028689 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0028690.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21582911 21593185 + MGP_C57BL6NJ_P0028690 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0028691.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21585231 21599589 + MGP_C57BL6NJ_P0028691 Fam161a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028692.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21589918 21600882 + MGP_C57BL6NJ_P0028692 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0028693.1 MGP_C57BL6NJ_G0018477.1 mouse_genomes_project 11 21590004 21593184 + MGP_C57BL6NJ_P0028693 Fam161a protein_coding protein_coding MGP_C57BL6NJ_T0031932.1 MGP_C57BL6NJ_G0019288.1 mouse_genomes_project 11 91175922 91235503 - MGP_C57BL6NJ_P0031932 Ypel2 protein_coding protein_coding MGP_C57BL6NJ_T0033696.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117307488 117394154 - MGP_C57BL6NJ_P0033696 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0033697.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117307490 117394228 - MGP_C57BL6NJ_P0033697 protein_coding protein_coding MGP_C57BL6NJ_T0033698.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117326340 117394172 - MGP_C57BL6NJ_P0033698 protein_coding protein_coding MGP_C57BL6NJ_T0033699.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117351120 117394195 - protein_coding retained_intron MGP_C57BL6NJ_T0033700.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117373845 117394190 - MGP_C57BL6NJ_P0033700 protein_coding protein_coding MGP_C57BL6NJ_T0033701.1 MGP_C57BL6NJ_G0019736.1 mouse_genomes_project 11 117381602 117394266 - protein_coding processed_transcript MGP_C57BL6NJ_T0030979.1 MGP_C57BL6NJ_G0019041.1 mouse_genomes_project 11 75935083 75990461 + MGP_C57BL6NJ_P0030979 Ncbp3 protein_coding protein_coding MGP_C57BL6NJ_T0030980.1 MGP_C57BL6NJ_G0019041.1 mouse_genomes_project 11 75935170 75956775 + Ncbp3 protein_coding retained_intron MGP_C57BL6NJ_T0030981.1 MGP_C57BL6NJ_G0019041.1 mouse_genomes_project 11 75935173 75954850 + Ncbp3 protein_coding retained_intron MGP_C57BL6NJ_T0012955.1 MGP_C57BL6NJ_G0011000.1 mouse_genomes_project 11 72208081 72208470 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031068.1 MGP_C57BL6NJ_G0019085.1 mouse_genomes_project 11 77433551 77656415 - MGP_C57BL6NJ_P0031068 Rap1gap2 protein_coding protein_coding MGP_C57BL6NJ_T0031069.1 MGP_C57BL6NJ_G0019085.1 mouse_genomes_project 11 77433678 77656387 - MGP_C57BL6NJ_P0031069 Rap1gap2 protein_coding protein_coding MGP_C57BL6NJ_T0031070.1 MGP_C57BL6NJ_G0019085.1 mouse_genomes_project 11 77433679 77465389 - Rap1gap2 protein_coding processed_transcript MGP_C57BL6NJ_T0031071.1 MGP_C57BL6NJ_G0019085.1 mouse_genomes_project 11 77494704 77656353 - MGP_C57BL6NJ_P0031071 Rap1gap2 protein_coding protein_coding MGP_C57BL6NJ_T0028500.1 MGP_C57BL6NJ_G0018432.1 mouse_genomes_project 11 6442992 6467137 + MGP_C57BL6NJ_P0028500 Gm11992 protein_coding protein_coding MGP_C57BL6NJ_T0033854.1 MGP_C57BL6NJ_G0019776.1 mouse_genomes_project 11 123039129 123054831 + MGP_C57BL6NJ_P0033854 Cdr2l protein_coding protein_coding MGP_C57BL6NJ_T0006479.1 MGP_C57BL6NJ_G0005401.1 mouse_genomes_project 11 94819335 94828118 - Gm11494 lincRNA lincRNA MGP_C57BL6NJ_T0101048.1 MGP_C57BL6NJ_G0039094.1 mouse_genomes_project 11 72249494 72249638 - Gm22988 snoRNA snoRNA MGP_C57BL6NJ_T0028240.1 MGP_C57BL6NJ_G0018371.1 mouse_genomes_project 11 1173337 1195515 + MGP_C57BL6NJ_P0028240 Sf3a1 protein_coding protein_coding MGP_C57BL6NJ_T0028241.1 MGP_C57BL6NJ_G0018371.1 mouse_genomes_project 11 1173342 1186084 + Sf3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0028242.1 MGP_C57BL6NJ_G0018371.1 mouse_genomes_project 11 1173342 1184900 + Sf3a1 protein_coding retained_intron MGP_C57BL6NJ_T0028243.1 MGP_C57BL6NJ_G0018371.1 mouse_genomes_project 11 1190521 1192393 + Sf3a1 protein_coding retained_intron MGP_C57BL6NJ_T0030329.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71523085 71537310 + Ctc1 protein_coding retained_intron MGP_C57BL6NJ_T0030330.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71523245 71550852 + MGP_C57BL6NJ_P0030330 Ctc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0030331.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71523256 71550849 + MGP_C57BL6NJ_P0030331 Ctc1 protein_coding protein_coding MGP_C57BL6NJ_T0030332.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71523292 71550854 + MGP_C57BL6NJ_P0030332 Ctc1 protein_coding protein_coding MGP_C57BL6NJ_T0030333.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71523293 71534914 + Ctc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030334.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71539822 71541347 + Ctc1 protein_coding retained_intron MGP_C57BL6NJ_T0030335.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71541208 71543704 + Ctc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030336.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71543384 71549156 + Ctc1 protein_coding processed_transcript MGP_C57BL6NJ_T0030337.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71548082 71550200 + Ctc1 protein_coding retained_intron MGP_C57BL6NJ_T0030338.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71548728 71550185 + Ctc1 protein_coding retained_intron MGP_C57BL6NJ_T0030339.1 MGP_C57BL6NJ_G0018905.1 mouse_genomes_project 11 71549086 71550559 + Ctc1 protein_coding retained_intron MGP_C57BL6NJ_T0006359.1 MGP_C57BL6NJ_G0005309.1 mouse_genomes_project 11 23613412 23637551 - Gm12665 lincRNA lincRNA MGP_C57BL6NJ_T0006360.1 MGP_C57BL6NJ_G0005309.1 mouse_genomes_project 11 23613412 23637559 - Gm12665 lincRNA lincRNA MGP_C57BL6NJ_T0012059.1 MGP_C57BL6NJ_G0010142.1 mouse_genomes_project 11 76325700 76329834 - MGP_C57BL6NJ_P0012059 Olfr377-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012989.1 MGP_C57BL6NJ_G0011034.1 mouse_genomes_project 11 82767073 82767521 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000975.1 MGP_C57BL6NJ_G0000885.1 mouse_genomes_project 11 17296104 17296960 - TEC TEC MGP_C57BL6NJ_T0034143.1 MGP_C57BL6NJ_G0019824.1 mouse_genomes_project 11 124407389 124418265 + Aanat protein_coding processed_transcript MGP_C57BL6NJ_T0034144.1 MGP_C57BL6NJ_G0019824.1 mouse_genomes_project 11 124414630 124418477 + MGP_C57BL6NJ_P0034144 Aanat protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034145.1 MGP_C57BL6NJ_G0019824.1 mouse_genomes_project 11 124414630 124418612 + MGP_C57BL6NJ_P0034145 Aanat protein_coding protein_coding MGP_C57BL6NJ_T0034146.1 MGP_C57BL6NJ_G0019824.1 mouse_genomes_project 11 124416519 124418477 + MGP_C57BL6NJ_P0034146 Aanat protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034147.1 MGP_C57BL6NJ_G0019824.1 mouse_genomes_project 11 124416714 124417197 + Aanat protein_coding processed_transcript MGP_C57BL6NJ_T0029844.1 MGP_C57BL6NJ_G0018801.1 mouse_genomes_project 11 61704626 61720105 + MGP_C57BL6NJ_P0029844 Med9 protein_coding protein_coding MGP_C57BL6NJ_T0029084.1 MGP_C57BL6NJ_G0018574.1 mouse_genomes_project 11 43845849 43911683 - MGP_C57BL6NJ_P0029084 Adra1b protein_coding protein_coding MGP_C57BL6NJ_T0029085.1 MGP_C57BL6NJ_G0018574.1 mouse_genomes_project 11 43845849 43984557 - MGP_C57BL6NJ_P0029085 Adra1b protein_coding protein_coding MGP_C57BL6NJ_T0029086.1 MGP_C57BL6NJ_G0018574.1 mouse_genomes_project 11 43847266 43984557 - MGP_C57BL6NJ_P0029086 Adra1b protein_coding protein_coding MGP_C57BL6NJ_T0006349.1 MGP_C57BL6NJ_G0005299.1 mouse_genomes_project 11 21157477 21158557 + Gm12052 lincRNA lincRNA MGP_C57BL6NJ_T0011566.1 MGP_C57BL6NJ_G0009651.1 mouse_genomes_project 11 87808312 87808620 + Gm23211 misc_RNA misc_RNA MGP_C57BL6NJ_T0003282.1 MGP_C57BL6NJ_G0003034.1 mouse_genomes_project 11 22552864 22553793 + Gm12061 antisense antisense MGP_C57BL6NJ_T0003288.1 MGP_C57BL6NJ_G0003039.1 mouse_genomes_project 11 29109753 29111480 + Gm29237 antisense antisense MGP_C57BL6NJ_T0029965.1 MGP_C57BL6NJ_G0018826.1 mouse_genomes_project 11 63093022 63097819 + MGP_C57BL6NJ_P0029965 Aldh3a1 protein_coding protein_coding MGP_C57BL6NJ_T0029966.1 MGP_C57BL6NJ_G0018826.1 mouse_genomes_project 11 63094106 63103907 + MGP_C57BL6NJ_P0029966 Aldh3a1 protein_coding protein_coding MGP_C57BL6NJ_T0029967.1 MGP_C57BL6NJ_G0018826.1 mouse_genomes_project 11 63094230 63103907 + MGP_C57BL6NJ_P0029967 Aldh3a1 protein_coding protein_coding MGP_C57BL6NJ_T0033449.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112552926 112563378 - MGP_C57BL6NJ_P0033449 Cyb561 protein_coding protein_coding MGP_C57BL6NJ_T0033450.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112554316 112563360 - MGP_C57BL6NJ_P0033450 Cyb561 protein_coding protein_coding MGP_C57BL6NJ_T0033451.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112554721 112555410 - Cyb561 protein_coding processed_transcript MGP_C57BL6NJ_T0033452.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112555031 112573011 - MGP_C57BL6NJ_P0033452 Cyb561 protein_coding protein_coding MGP_C57BL6NJ_T0033453.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112555442 112563650 - MGP_C57BL6NJ_P0033453 Cyb561 protein_coding protein_coding MGP_C57BL6NJ_T0033454.1 MGP_C57BL6NJ_G0019679.1 mouse_genomes_project 11 112555787 112563708 - MGP_C57BL6NJ_P0033454 Cyb561 protein_coding protein_coding MGP_C57BL6NJ_T0034274.1 MGP_C57BL6NJ_G0019851.1 mouse_genomes_project 11 126002984 126006092 - MGP_C57BL6NJ_P0034274 Socs3 protein_coding protein_coding MGP_C57BL6NJ_T0034275.1 MGP_C57BL6NJ_G0019851.1 mouse_genomes_project 11 126005780 126006953 - Socs3 protein_coding processed_transcript MGP_C57BL6NJ_T0034276.1 MGP_C57BL6NJ_G0019851.1 mouse_genomes_project 11 126005839 126006357 - Socs3 protein_coding processed_transcript MGP_C57BL6NJ_T0033800.1 MGP_C57BL6NJ_G0019760.1 mouse_genomes_project 11 122537018 122542900 - MGP_C57BL6NJ_P0033800 Cd300c2 protein_coding protein_coding MGP_C57BL6NJ_T0033801.1 MGP_C57BL6NJ_G0019760.1 mouse_genomes_project 11 122537019 122542900 - MGP_C57BL6NJ_P0033801 Cd300c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033846.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123004977 123025020 - MGP_C57BL6NJ_P0033846 Hid1 protein_coding protein_coding MGP_C57BL6NJ_T0033847.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123004977 123025057 - MGP_C57BL6NJ_P0033847 Hid1 protein_coding protein_coding MGP_C57BL6NJ_T0033848.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123006279 123008271 - Hid1 protein_coding processed_transcript MGP_C57BL6NJ_T0033849.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123011379 123012674 - Hid1 protein_coding processed_transcript MGP_C57BL6NJ_T0033850.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123012659 123024968 - MGP_C57BL6NJ_P0033850 Hid1 protein_coding protein_coding MGP_C57BL6NJ_T0033851.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123013992 123017618 - Hid1 protein_coding processed_transcript MGP_C57BL6NJ_T0033852.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123014087 123024910 - Hid1 protein_coding processed_transcript MGP_C57BL6NJ_T0033853.1 MGP_C57BL6NJ_G0019775.1 mouse_genomes_project 11 123015973 123016614 - Hid1 protein_coding processed_transcript MGP_C57BL6NJ_T0012947.1 MGP_C57BL6NJ_G0010992.1 mouse_genomes_project 11 65319639 65319872 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029261.1 MGP_C57BL6NJ_G0018628.1 mouse_genomes_project 11 50516186 50592841 + MGP_C57BL6NJ_P0029261 Rasgef1c protein_coding protein_coding MGP_C57BL6NJ_T0029262.1 MGP_C57BL6NJ_G0018628.1 mouse_genomes_project 11 50516416 50593615 + MGP_C57BL6NJ_P0029262 Rasgef1c protein_coding protein_coding MGP_C57BL6NJ_T0029263.1 MGP_C57BL6NJ_G0018628.1 mouse_genomes_project 11 50574419 50588371 + Rasgef1c protein_coding processed_transcript MGP_C57BL6NJ_T0012907.1 MGP_C57BL6NJ_G0010952.1 mouse_genomes_project 11 54647288 54647921 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012978.1 MGP_C57BL6NJ_G0011023.1 mouse_genomes_project 11 80437686 80437990 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028939.1 MGP_C57BL6NJ_G0018534.1 mouse_genomes_project 11 31891276 32003719 + MGP_C57BL6NJ_P0028939 Fbxw11 protein_coding protein_coding MGP_C57BL6NJ_T0028940.1 MGP_C57BL6NJ_G0018534.1 mouse_genomes_project 11 31891336 31901097 + Fbxw11 protein_coding processed_transcript MGP_C57BL6NJ_T0028941.1 MGP_C57BL6NJ_G0018534.1 mouse_genomes_project 11 31891418 32003939 + MGP_C57BL6NJ_P0028941 Fbxw11 protein_coding protein_coding MGP_C57BL6NJ_T0028942.1 MGP_C57BL6NJ_G0018534.1 mouse_genomes_project 11 31891427 32003966 + MGP_C57BL6NJ_P0028942 Fbxw11 protein_coding protein_coding MGP_C57BL6NJ_T0028943.1 MGP_C57BL6NJ_G0018534.1 mouse_genomes_project 11 31891456 31978996 + MGP_C57BL6NJ_P0028943 Fbxw11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028396.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3142570 3242128 - MGP_C57BL6NJ_P0028396 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028397.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3142592 3157141 - Camk2b protein_coding processed_transcript MGP_C57BL6NJ_T0028398.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3142596 3241943 - MGP_C57BL6NJ_P0028398 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028399.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3142596 3242128 - MGP_C57BL6NJ_P0028399 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028400.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144492 3241943 - MGP_C57BL6NJ_P0028400 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028401.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144593 3241962 - MGP_C57BL6NJ_P0028401 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028402.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144596 3241925 - MGP_C57BL6NJ_P0028402 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028403.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144596 3242122 - MGP_C57BL6NJ_P0028403 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028404.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144604 3241992 - MGP_C57BL6NJ_P0028404 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028405.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3144659 3241918 - MGP_C57BL6NJ_P0028405 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028406.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3145141 3241950 - MGP_C57BL6NJ_P0028406 Camk2b protein_coding protein_coding MGP_C57BL6NJ_T0028407.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3161103 3241918 - Camk2b protein_coding processed_transcript MGP_C57BL6NJ_T0028408.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3163397 3173451 - Camk2b protein_coding processed_transcript MGP_C57BL6NJ_T0028409.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3165822 3242742 - Camk2b protein_coding processed_transcript MGP_C57BL6NJ_T0028410.1 MGP_C57BL6NJ_G0018407.1 mouse_genomes_project 11 3186211 3242038 - Camk2b protein_coding processed_transcript MGP_C57BL6NJ_T0028359.1 MGP_C57BL6NJ_G0018396.1 mouse_genomes_project 11 2701035 2832948 + MGP_C57BL6NJ_P0028359 Ankrd36 protein_coding protein_coding MGP_C57BL6NJ_T0028360.1 MGP_C57BL6NJ_G0018396.1 mouse_genomes_project 11 2701048 2715635 + MGP_C57BL6NJ_P0028360 Ankrd36 protein_coding protein_coding MGP_C57BL6NJ_T0028361.1 MGP_C57BL6NJ_G0018396.1 mouse_genomes_project 11 2701168 2795967 + MGP_C57BL6NJ_P0028361 Ankrd36 protein_coding protein_coding MGP_C57BL6NJ_T0028362.1 MGP_C57BL6NJ_G0018396.1 mouse_genomes_project 11 2705434 2715485 + Ankrd36 protein_coding processed_transcript MGP_C57BL6NJ_T0028363.1 MGP_C57BL6NJ_G0018396.1 mouse_genomes_project 11 2763466 2781048 + MGP_C57BL6NJ_P0028363 Ankrd36 protein_coding protein_coding MGP_C57BL6NJ_T0009868.1 MGP_C57BL6NJ_G0007953.1 mouse_genomes_project 11 50686083 50686181 + Mir340 miRNA miRNA MGP_C57BL6NJ_T0032147.1 MGP_C57BL6NJ_G0019343.1 mouse_genomes_project 11 99281017 99284892 + MGP_C57BL6NJ_P0032147 Tob1 protein_coding protein_coding MGP_C57BL6NJ_T0012862.1 MGP_C57BL6NJ_G0010907.1 mouse_genomes_project 11 32331937 32335323 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013097.1 MGP_C57BL6NJ_G0011142.1 mouse_genomes_project 11 130279533 130279960 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028802.1 MGP_C57BL6NJ_G0018500.1 mouse_genomes_project 11 28462605 28465880 - MGP_C57BL6NJ_P0028802 Prorsd1 protein_coding protein_coding MGP_C57BL6NJ_T0028803.1 MGP_C57BL6NJ_G0018500.1 mouse_genomes_project 11 28463724 28465882 - MGP_C57BL6NJ_P0028803 Prorsd1 protein_coding protein_coding MGP_C57BL6NJ_T0009937.1 MGP_C57BL6NJ_G0008022.1 mouse_genomes_project 11 103518025 103518095 - Gm22461 miRNA miRNA MGP_C57BL6NJ_T0012874.1 MGP_C57BL6NJ_G0010919.1 mouse_genomes_project 11 40415583 40416792 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033290.1 MGP_C57BL6NJ_G0019644.1 mouse_genomes_project 11 109361850 109376624 + Nmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0033291.1 MGP_C57BL6NJ_G0019644.1 mouse_genomes_project 11 109362006 109416613 + MGP_C57BL6NJ_P0033291 Nmt1 protein_coding protein_coding MGP_C57BL6NJ_T0033292.1 MGP_C57BL6NJ_G0019644.1 mouse_genomes_project 11 109362245 109403732 + Nmt1 protein_coding processed_transcript MGP_C57BL6NJ_T0101017.1 MGP_C57BL6NJ_G0039063.1 mouse_genomes_project 11 10349628 10349758 + Gm22789 snoRNA snoRNA MGP_C57BL6NJ_T0029909.1 MGP_C57BL6NJ_G0018813.1 mouse_genomes_project 11 62535217 62549665 + MGP_C57BL6NJ_P0029909 Llgl1 protein_coding protein_coding MGP_C57BL6NJ_T0029910.1 MGP_C57BL6NJ_G0018813.1 mouse_genomes_project 11 62535339 62549665 + MGP_C57BL6NJ_P0029910 Llgl1 protein_coding protein_coding MGP_C57BL6NJ_T0029911.1 MGP_C57BL6NJ_G0018813.1 mouse_genomes_project 11 62539675 62541548 + Llgl1 protein_coding retained_intron MGP_C57BL6NJ_T0013057.1 MGP_C57BL6NJ_G0011102.1 mouse_genomes_project 11 111582313 111583004 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028295.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1967335 2003255 + MGP_C57BL6NJ_P0028295 Thoc5 protein_coding protein_coding MGP_C57BL6NJ_T0028296.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1967358 2003253 + MGP_C57BL6NJ_P0028296 Thoc5 protein_coding protein_coding MGP_C57BL6NJ_T0028297.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1974087 1988316 + Thoc5 protein_coding processed_transcript MGP_C57BL6NJ_T0028298.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1974087 1976570 + Thoc5 protein_coding processed_transcript MGP_C57BL6NJ_T0028299.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1974087 1992334 + MGP_C57BL6NJ_P0028299 Thoc5 protein_coding protein_coding MGP_C57BL6NJ_T0028300.1 MGP_C57BL6NJ_G0018384.1 mouse_genomes_project 11 1989414 1994873 + Thoc5 protein_coding processed_transcript MGP_C57BL6NJ_T0029708.1 MGP_C57BL6NJ_G0018746.1 mouse_genomes_project 11 59954120 59962191 - MGP_C57BL6NJ_P0029708 4930504O13Rik protein_coding protein_coding MGP_C57BL6NJ_T0029355.1 MGP_C57BL6NJ_G0018649.1 mouse_genomes_project 11 51642195 51643496 + MGP_C57BL6NJ_P0029355 Olfr1378 protein_coding protein_coding MGP_C57BL6NJ_T0028549.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869427 10106268 - MGP_C57BL6NJ_P0028549 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028550.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869495 10106323 - MGP_C57BL6NJ_P0028550 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028551.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869495 10106421 - MGP_C57BL6NJ_P0028551 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028552.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869497 10049899 - MGP_C57BL6NJ_P0028552 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028553.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869497 10106424 - MGP_C57BL6NJ_P0028553 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028554.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9869930 10106264 - MGP_C57BL6NJ_P0028554 Cobl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028555.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9901005 10004293 - MGP_C57BL6NJ_P0028555 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028556.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9930409 10004241 - MGP_C57BL6NJ_P0028556 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0028557.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9938869 10106216 - Cobl protein_coding retained_intron MGP_C57BL6NJ_T0028558.1 MGP_C57BL6NJ_G0018442.1 mouse_genomes_project 11 9978670 10015318 - MGP_C57BL6NJ_P0028558 Cobl protein_coding protein_coding MGP_C57BL6NJ_T0030759.1 MGP_C57BL6NJ_G0018997.1 mouse_genomes_project 11 73339437 73342352 + MGP_C57BL6NJ_P0030759 Gp1ba protein_coding protein_coding MGP_C57BL6NJ_T0030760.1 MGP_C57BL6NJ_G0018997.1 mouse_genomes_project 11 73339459 73342136 + MGP_C57BL6NJ_P0030760 Gp1ba protein_coding protein_coding MGP_C57BL6NJ_T0030132.1 MGP_C57BL6NJ_G0018855.1 mouse_genomes_project 11 64875297 64897869 + MGP_C57BL6NJ_P0030132 Trim16 protein_coding protein_coding MGP_C57BL6NJ_T0030133.1 MGP_C57BL6NJ_G0018855.1 mouse_genomes_project 11 64875319 64906846 + MGP_C57BL6NJ_P0030133 Trim16 protein_coding protein_coding MGP_C57BL6NJ_T0030134.1 MGP_C57BL6NJ_G0018855.1 mouse_genomes_project 11 64875506 64876312 + Trim16 protein_coding processed_transcript MGP_C57BL6NJ_T0030135.1 MGP_C57BL6NJ_G0018855.1 mouse_genomes_project 11 64875535 64897869 + MGP_C57BL6NJ_P0030135 Trim16 protein_coding protein_coding MGP_C57BL6NJ_T0030136.1 MGP_C57BL6NJ_G0018855.1 mouse_genomes_project 11 64888720 64896390 + Trim16 protein_coding processed_transcript MGP_C57BL6NJ_T0012856.1 MGP_C57BL6NJ_G0010901.1 mouse_genomes_project 11 29982053 29983032 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012777.1 MGP_C57BL6NJ_G0010822.1 mouse_genomes_project 11 7759012 7759927 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033075.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108184860 108200705 - MGP_C57BL6NJ_P0033075 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033076.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108184860 108198491 - MGP_C57BL6NJ_P0033076 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033077.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108184860 108200705 - MGP_C57BL6NJ_P0033077 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033078.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108184860 108197195 - MGP_C57BL6NJ_P0033078 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033079.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108187179 108195387 - MGP_C57BL6NJ_P0033079 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033080.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108188426 108198470 - MGP_C57BL6NJ_P0033080 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0033081.1 MGP_C57BL6NJ_G0019606.1 mouse_genomes_project 11 108194292 108198443 - MGP_C57BL6NJ_P0033081 Dusp3 protein_coding protein_coding MGP_C57BL6NJ_T0012966.1 MGP_C57BL6NJ_G0011011.1 mouse_genomes_project 11 73647816 73651492 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0031526.1 MGP_C57BL6NJ_G0019185.1 mouse_genomes_project 11 82549854 82690475 - MGP_C57BL6NJ_P0031526 Ksr1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0031527.1 MGP_C57BL6NJ_G0019185.1 mouse_genomes_project 11 82549863 82690633 - MGP_C57BL6NJ_P0031527 Ksr1 protein_coding protein_coding MGP_C57BL6NJ_T0031528.1 MGP_C57BL6NJ_G0019185.1 mouse_genomes_project 11 82565394 82690633 - MGP_C57BL6NJ_P0031528 Ksr1 protein_coding protein_coding MGP_C57BL6NJ_T0031529.1 MGP_C57BL6NJ_G0019185.1 mouse_genomes_project 11 82583394 82598350 - MGP_C57BL6NJ_P0031529 Ksr1 protein_coding protein_coding MGP_C57BL6NJ_T0031530.1 MGP_C57BL6NJ_G0019185.1 mouse_genomes_project 11 82583657 82596102 - MGP_C57BL6NJ_P0031530 Ksr1 protein_coding protein_coding MGP_C57BL6NJ_T0030226.1 MGP_C57BL6NJ_G0018882.1 mouse_genomes_project 11 69676400 69733942 + MGP_C57BL6NJ_P0030226 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0030227.1 MGP_C57BL6NJ_G0018882.1 mouse_genomes_project 11 69724102 69731644 + MGP_C57BL6NJ_P0030227 protein_coding protein_coding MGP_C57BL6NJ_T0028645.1 MGP_C57BL6NJ_G0018466.1 mouse_genomes_project 11 20032705 20048183 - MGP_C57BL6NJ_P0028645 Mdh1 protein_coding protein_coding MGP_C57BL6NJ_T0028646.1 MGP_C57BL6NJ_G0018466.1 mouse_genomes_project 11 20034408 20035648 - Mdh1 protein_coding processed_transcript MGP_C57BL6NJ_T0028647.1 MGP_C57BL6NJ_G0018466.1 mouse_genomes_project 11 20035440 20040126 - Mdh1 protein_coding processed_transcript MGP_C57BL6NJ_T0028648.1 MGP_C57BL6NJ_G0018466.1 mouse_genomes_project 11 20038814 20048357 - MGP_C57BL6NJ_P0028648 Mdh1 protein_coding protein_coding MGP_C57BL6NJ_T0031356.1 MGP_C57BL6NJ_G0019147.1 mouse_genomes_project 11 81203156 81205451 - MGP_C57BL6NJ_P0031356 Gm10277 protein_coding protein_coding MGP_C57BL6NJ_T0006399.1 MGP_C57BL6NJ_G0005341.1 mouse_genomes_project 11 51822017 51828781 + 9230009I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0034022.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123789853 123823763 + MGP_C57BL6NJ_P0034022 Unk protein_coding protein_coding MGP_C57BL6NJ_T0034023.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123789853 123823763 + MGP_C57BL6NJ_P0034023 Unk protein_coding protein_coding MGP_C57BL6NJ_T0034024.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123789854 123803759 + Unk protein_coding processed_transcript MGP_C57BL6NJ_T0034025.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123800728 123823763 + Unk protein_coding processed_transcript MGP_C57BL6NJ_T0034026.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123811847 123816227 + Unk protein_coding retained_intron MGP_C57BL6NJ_T0034027.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123815843 123818616 + Unk protein_coding retained_intron MGP_C57BL6NJ_T0034028.1 MGP_C57BL6NJ_G0019804.1 mouse_genomes_project 11 123818446 123821655 + Unk protein_coding retained_intron MGP_C57BL6NJ_T0029756.1 MGP_C57BL6NJ_G0018778.1 mouse_genomes_project 11 60635905 60649073 + MGP_C57BL6NJ_P0029756 Trim11 protein_coding protein_coding MGP_C57BL6NJ_T0029757.1 MGP_C57BL6NJ_G0018778.1 mouse_genomes_project 11 60635927 60649076 + MGP_C57BL6NJ_P0029757 Trim11 protein_coding protein_coding MGP_C57BL6NJ_T0029758.1 MGP_C57BL6NJ_G0018778.1 mouse_genomes_project 11 60635928 60649075 + MGP_C57BL6NJ_P0029758 Trim11 protein_coding protein_coding MGP_C57BL6NJ_T0031697.1 MGP_C57BL6NJ_G0019230.1 mouse_genomes_project 11 86794626 86851965 - MGP_C57BL6NJ_P0031697 Slfn8 protein_coding protein_coding MGP_C57BL6NJ_T0031698.1 MGP_C57BL6NJ_G0019230.1 mouse_genomes_project 11 86794626 86852053 - MGP_C57BL6NJ_P0031698 Slfn8 protein_coding protein_coding MGP_C57BL6NJ_T0031699.1 MGP_C57BL6NJ_G0019230.1 mouse_genomes_project 11 86794822 86852053 - MGP_C57BL6NJ_P0031699 Slfn8 protein_coding protein_coding MGP_C57BL6NJ_T0031701.1 MGP_C57BL6NJ_G0019230.1 mouse_genomes_project 11 86798062 86851351 - MGP_C57BL6NJ_P0031701 Slfn8 protein_coding protein_coding MGP_C57BL6NJ_T0031702.1 MGP_C57BL6NJ_G0019230.1 mouse_genomes_project 11 86798062 86848423 - MGP_C57BL6NJ_P0031702 Slfn8 protein_coding protein_coding MGP_C57BL6NJ_T0028569.1 MGP_C57BL6NJ_G0018445.1 mouse_genomes_project 11 14736165 14879094 + MGP_C57BL6NJ_P0028569 Egfr protein_coding protein_coding MGP_C57BL6NJ_T0028570.1 MGP_C57BL6NJ_G0018445.1 mouse_genomes_project 11 14736173 14912795 + MGP_C57BL6NJ_P0028570 Egfr protein_coding protein_coding MGP_C57BL6NJ_T0028571.1 MGP_C57BL6NJ_G0018445.1 mouse_genomes_project 11 14736192 14777690 + Egfr protein_coding processed_transcript MGP_C57BL6NJ_T0028572.1 MGP_C57BL6NJ_G0018445.1 mouse_genomes_project 11 14868997 14875528 + MGP_C57BL6NJ_P0028572 Egfr protein_coding protein_coding MGP_C57BL6NJ_T0028573.1 MGP_C57BL6NJ_G0018445.1 mouse_genomes_project 11 14898382 14904006 + Egfr protein_coding processed_transcript MGP_C57BL6NJ_T0031756.1 MGP_C57BL6NJ_G0019252.1 mouse_genomes_project 11 87701970 87707673 + MGP_C57BL6NJ_P0031756 Wfdc21 protein_coding protein_coding MGP_C57BL6NJ_T0029242.1 MGP_C57BL6NJ_G0018624.1 mouse_genomes_project 11 50256308 50257817 + MGP_C57BL6NJ_P0029242 Scgb3a1 protein_coding protein_coding MGP_C57BL6NJ_T0029243.1 MGP_C57BL6NJ_G0018624.1 mouse_genomes_project 11 50256308 50257817 + MGP_C57BL6NJ_P0029243 Scgb3a1 protein_coding protein_coding MGP_C57BL6NJ_T0003477.1 MGP_C57BL6NJ_G0003196.1 mouse_genomes_project 11 115047116 115059427 + Gm11655 antisense antisense MGP_C57BL6NJ_T0029089.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44580720 44601304 - MGP_C57BL6NJ_P0029089 Ublcp1 protein_coding protein_coding MGP_C57BL6NJ_T0029090.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44580722 44585925 - Ublcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0029091.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44580722 44588513 - Ublcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0029092.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44583231 44593308 - Ublcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0029093.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44583935 44589036 - Ublcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0029094.1 MGP_C57BL6NJ_G0018576.1 mouse_genomes_project 11 44595090 44597880 - Ublcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0101072.1 MGP_C57BL6NJ_G0039118.1 mouse_genomes_project 11 91771178 91771394 + Rnu3b1 snoRNA snoRNA MGP_C57BL6NJ_T0029509.1 MGP_C57BL6NJ_G0018694.1 mouse_genomes_project 11 54651063 54715825 - MGP_C57BL6NJ_P0029509 Rad50 protein_coding protein_coding MGP_C57BL6NJ_T0029510.1 MGP_C57BL6NJ_G0018694.1 mouse_genomes_project 11 54678161 54715825 - MGP_C57BL6NJ_P0029510 Rad50 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029511.1 MGP_C57BL6NJ_G0018694.1 mouse_genomes_project 11 54684146 54685524 - Rad50 protein_coding processed_transcript MGP_C57BL6NJ_T0029512.1 MGP_C57BL6NJ_G0018694.1 mouse_genomes_project 11 54690507 54715801 - MGP_C57BL6NJ_P0029512 Rad50 protein_coding protein_coding MGP_C57BL6NJ_T0029513.1 MGP_C57BL6NJ_G0018694.1 mouse_genomes_project 11 54699414 54702495 - Rad50 protein_coding processed_transcript MGP_C57BL6NJ_T0028159.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 437885 448895 - MGP_C57BL6NJ_P0028159 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0028160.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 437894 448281 - MGP_C57BL6NJ_P0028160 protein_coding non_stop_decay MGP_C57BL6NJ_T0028161.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 437894 445641 - MGP_C57BL6NJ_P0028161 protein_coding protein_coding MGP_C57BL6NJ_T0028162.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 437894 448278 - MGP_C57BL6NJ_P0028162 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028163.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 438059 448293 - MGP_C57BL6NJ_P0028163 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028164.1 MGP_C57BL6NJ_G0018353.1 mouse_genomes_project 11 442458 448306 - MGP_C57BL6NJ_P0028164 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101050.1 MGP_C57BL6NJ_G0039096.1 mouse_genomes_project 11 74044405 74044539 - Gm23311 snoRNA snoRNA MGP_C57BL6NJ_T0031634.1 MGP_C57BL6NJ_G0019210.1 mouse_genomes_project 11 84569350 85708868 - MGP_C57BL6NJ_P0031634 Asic2 protein_coding protein_coding MGP_C57BL6NJ_T0031635.1 MGP_C57BL6NJ_G0019210.1 mouse_genomes_project 11 84569350 84859343 - MGP_C57BL6NJ_P0031635 Asic2 protein_coding protein_coding MGP_C57BL6NJ_T0030880.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74539702 74549887 + MGP_C57BL6NJ_P0030880 Wscd1 protein_coding protein_coding MGP_C57BL6NJ_T0030881.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74540467 74579428 + MGP_C57BL6NJ_P0030881 Wscd1 protein_coding protein_coding MGP_C57BL6NJ_T0030882.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74540762 74579428 + MGP_C57BL6NJ_P0030882 Wscd1 protein_coding protein_coding MGP_C57BL6NJ_T0030883.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74541158 74550743 + Wscd1 protein_coding retained_intron MGP_C57BL6NJ_T0030884.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74541158 74579428 + MGP_C57BL6NJ_P0030884 Wscd1 protein_coding protein_coding MGP_C57BL6NJ_T0030885.1 MGP_C57BL6NJ_G0019017.1 mouse_genomes_project 11 74558450 74575066 + Wscd1 protein_coding processed_transcript MGP_C57BL6NJ_T0012880.1 MGP_C57BL6NJ_G0010925.1 mouse_genomes_project 11 43681061 43682274 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0033662.1 MGP_C57BL6NJ_G0019727.1 mouse_genomes_project 11 116461127 116477751 + Arsg protein_coding processed_transcript MGP_C57BL6NJ_T0033663.1 MGP_C57BL6NJ_G0019727.1 mouse_genomes_project 11 116461127 116566545 + MGP_C57BL6NJ_P0033663 Arsg protein_coding protein_coding MGP_C57BL6NJ_T0033664.1 MGP_C57BL6NJ_G0019727.1 mouse_genomes_project 11 116472774 116477649 + Arsg protein_coding processed_transcript MGP_C57BL6NJ_T0033665.1 MGP_C57BL6NJ_G0019727.1 mouse_genomes_project 11 116473357 116566550 + MGP_C57BL6NJ_P0033665 Arsg protein_coding protein_coding MGP_C57BL6NJ_T0033666.1 MGP_C57BL6NJ_G0019727.1 mouse_genomes_project 11 116531368 116566550 + MGP_C57BL6NJ_P0033666 Arsg protein_coding protein_coding MGP_C57BL6NJ_T0003455.1 MGP_C57BL6NJ_G0003176.1 mouse_genomes_project 11 108636103 108637575 - Bloodlinc antisense antisense MGP_C57BL6NJ_T0012913.1 MGP_C57BL6NJ_G0010958.1 mouse_genomes_project 11 55317167 55317427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102155.1 MGP_C57BL6NJ_G0040184.1 mouse_genomes_project 11 114363014 114363389 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0032106.1 MGP_C57BL6NJ_G0019335.1 mouse_genomes_project 11 96413538 96415782 - MGP_C57BL6NJ_P0032106 Kif2b protein_coding protein_coding MGP_C57BL6NJ_T0099320.1 MGP_C57BL6NJ_G0037383.1 mouse_genomes_project 11 34756015 34756732 + Gm12122 sense_intronic sense_intronic MGP_C57BL6NJ_T0012801.1 MGP_C57BL6NJ_G0010846.1 mouse_genomes_project 11 16715359 16716612 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030148.1 MGP_C57BL6NJ_G0018859.1 mouse_genomes_project 11 65128787 65165262 + MGP_C57BL6NJ_P0030148 Tekt3 protein_coding protein_coding MGP_C57BL6NJ_T0029437.1 MGP_C57BL6NJ_G0018671.1 mouse_genomes_project 11 52929212 52959924 + MGP_C57BL6NJ_P0029437 Ppp2ca protein_coding protein_coding MGP_C57BL6NJ_T0029438.1 MGP_C57BL6NJ_G0018671.1 mouse_genomes_project 11 52950953 52951903 + Ppp2ca protein_coding retained_intron MGP_C57BL6NJ_T0034717.1 MGP_C57BL6NJ_G0019939.1 mouse_genomes_project 11 129784787 129794670 + MGP_C57BL6NJ_P0034717 Fn3krp protein_coding protein_coding MGP_C57BL6NJ_T0029366.1 MGP_C57BL6NJ_G0018655.1 mouse_genomes_project 11 52015011 52024312 - MGP_C57BL6NJ_P0029366 BC049762 protein_coding protein_coding MGP_C57BL6NJ_T0029367.1 MGP_C57BL6NJ_G0018655.1 mouse_genomes_project 11 52015011 52024407 - MGP_C57BL6NJ_P0029367 BC049762 protein_coding protein_coding MGP_C57BL6NJ_T0031506.1 MGP_C57BL6NJ_G0019177.1 mouse_genomes_project 11 82011502 82024970 - MGP_C57BL6NJ_P0031506 Tnfaip1 protein_coding protein_coding MGP_C57BL6NJ_T0031507.1 MGP_C57BL6NJ_G0019177.1 mouse_genomes_project 11 82011502 82025031 - MGP_C57BL6NJ_P0031507 Tnfaip1 protein_coding protein_coding MGP_C57BL6NJ_T0028416.1 MGP_C57BL6NJ_G0018410.1 mouse_genomes_project 11 3410633 3431579 - MGP_C57BL6NJ_P0028416 Npc1l1 protein_coding protein_coding MGP_C57BL6NJ_T0009853.1 MGP_C57BL6NJ_G0007938.1 mouse_genomes_project 11 24989013 24989122 + Mir6372 miRNA miRNA MGP_C57BL6NJ_T0009941.1 MGP_C57BL6NJ_G0008026.1 mouse_genomes_project 11 106414671 106414752 - Gm27374 miRNA miRNA MGP_C57BL6NJ_T0003291.1 MGP_C57BL6NJ_G0003042.1 mouse_genomes_project 11 33672183 33680590 + 4930403D09Rik antisense antisense MGP_C57BL6NJ_T0099807.1 MGP_C57BL6NJ_G0037853.1 mouse_genomes_project 11 123295118 123295225 + Gm25364 snRNA snRNA MGP_C57BL6NJ_T0032568.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103969865 104000428 + MGP_C57BL6NJ_P0032568 Stard3 protein_coding protein_coding MGP_C57BL6NJ_T0032569.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103969927 103996159 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0032570.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103969928 104000441 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0032571.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103969941 103996164 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0032572.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103994848 103997977 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0032573.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103995775 103997558 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0032574.1 MGP_C57BL6NJ_G0019449.1 mouse_genomes_project 11 103997484 103998677 + Stard3 protein_coding processed_transcript MGP_C57BL6NJ_T0013058.1 MGP_C57BL6NJ_G0011103.1 mouse_genomes_project 11 111584168 111585209 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006528.1 MGP_C57BL6NJ_G0005436.1 mouse_genomes_project 11 123725315 123734147 - B230344G16Rik lincRNA lincRNA MGP_C57BL6NJ_T0031284.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254174 80255204 + Blmh protein_coding retained_intron MGP_C57BL6NJ_T0031285.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254184 80276618 + Blmh protein_coding retained_intron MGP_C57BL6NJ_T0031286.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254266 80275635 + MGP_C57BL6NJ_P0031286 Blmh protein_coding protein_coding MGP_C57BL6NJ_T0031287.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254296 80298360 + MGP_C57BL6NJ_P0031287 Blmh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031288.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254326 80298914 + MGP_C57BL6NJ_P0031288 Blmh protein_coding protein_coding MGP_C57BL6NJ_T0031289.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254492 80263352 + MGP_C57BL6NJ_P0031289 Blmh protein_coding protein_coding MGP_C57BL6NJ_T0031290.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80254513 80260975 + MGP_C57BL6NJ_P0031290 Blmh protein_coding protein_coding MGP_C57BL6NJ_T0031291.1 MGP_C57BL6NJ_G0019132.1 mouse_genomes_project 11 80270056 80274672 + Blmh protein_coding processed_transcript MGP_C57BL6NJ_T0029824.1 MGP_C57BL6NJ_G0018797.1 mouse_genomes_project 11 61526961 61530710 - Pld6 protein_coding processed_transcript MGP_C57BL6NJ_T0029825.1 MGP_C57BL6NJ_G0018797.1 mouse_genomes_project 11 61527767 61530707 - MGP_C57BL6NJ_P0029825 Pld6 protein_coding protein_coding MGP_C57BL6NJ_T0017711.1 MGP_C57BL6NJ_G0015593.1 mouse_genomes_project 11 102482403 102488150 - Gm11532 processed_transcript processed_transcript MGP_C57BL6NJ_T0009951.1 MGP_C57BL6NJ_G0008036.1 mouse_genomes_project 11 110712856 110712927 - miRNA miRNA MGP_C57BL6NJ_T0012771.1 MGP_C57BL6NJ_G0010816.1 mouse_genomes_project 11 4073052 4073366 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0032463.1 MGP_C57BL6NJ_G0019423.1 mouse_genomes_project 11 102877635 102916410 + MGP_C57BL6NJ_P0032463 Socs7 protein_coding protein_coding MGP_C57BL6NJ_T0032464.1 MGP_C57BL6NJ_G0019423.1 mouse_genomes_project 11 102893938 102895169 + Socs7 protein_coding processed_transcript MGP_C57BL6NJ_T0099764.1 MGP_C57BL6NJ_G0037810.1 mouse_genomes_project 11 73740171 73740277 - Gm22297 snRNA snRNA MGP_C57BL6NJ_T0029515.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54790563 54797872 + MGP_C57BL6NJ_P0029515 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029516.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54790597 54795652 + MGP_C57BL6NJ_P0029516 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029517.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54790600 54798923 + MGP_C57BL6NJ_P0029517 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029518.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54790620 54796927 + Irf1 protein_coding processed_transcript MGP_C57BL6NJ_T0029519.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54790654 54794634 + MGP_C57BL6NJ_P0029519 Irf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029520.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54791025 54793487 + MGP_C57BL6NJ_P0029520 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029521.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54791035 54794743 + MGP_C57BL6NJ_P0029521 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029522.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54791043 54797872 + MGP_C57BL6NJ_P0029522 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029523.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54791057 54794506 + MGP_C57BL6NJ_P0029523 Irf1 protein_coding protein_coding MGP_C57BL6NJ_T0029525.1 MGP_C57BL6NJ_G0018696.1 mouse_genomes_project 11 54793701 54794679 + Irf1 protein_coding retained_intron MGP_C57BL6NJ_T0030812.1 MGP_C57BL6NJ_G0019006.1 mouse_genomes_project 11 73484954 73498659 + MGP_C57BL6NJ_P0030812 Zfp3 protein_coding protein_coding MGP_C57BL6NJ_T0031168.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698274 78709856 + MGP_C57BL6NJ_P0031168 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031169.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698278 78748745 + MGP_C57BL6NJ_P0031169 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031170.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698278 78742891 + MGP_C57BL6NJ_P0031170 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031171.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698323 78712310 + MGP_C57BL6NJ_P0031171 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031172.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698692 78748740 + MGP_C57BL6NJ_P0031172 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031173.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78698718 78712363 + MGP_C57BL6NJ_P0031173 Slc43a2 protein_coding protein_coding MGP_C57BL6NJ_T0031174.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78704540 78712297 + Slc43a2 protein_coding processed_transcript MGP_C57BL6NJ_T0031175.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78728939 78735186 + Slc43a2 protein_coding retained_intron MGP_C57BL6NJ_T0031176.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78734125 78739203 + Slc43a2 protein_coding processed_transcript MGP_C57BL6NJ_T0031177.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78734821 78741420 + Slc43a2 protein_coding retained_intron MGP_C57BL6NJ_T0031178.1 MGP_C57BL6NJ_G0019108.1 mouse_genomes_project 11 78734934 78740798 + Slc43a2 protein_coding processed_transcript MGP_C57BL6NJ_T0101043.1 MGP_C57BL6NJ_G0039089.1 mouse_genomes_project 11 64633061 64633133 + Snord65 snoRNA snoRNA MGP_C57BL6NJ_T0031031.1 MGP_C57BL6NJ_G0019063.1 mouse_genomes_project 11 76776866 76781069 - MGP_C57BL6NJ_P0031031 Olfr389 protein_coding protein_coding MGP_C57BL6NJ_T0031032.1 MGP_C57BL6NJ_G0019063.1 mouse_genomes_project 11 76777132 76781015 - MGP_C57BL6NJ_P0031032 Olfr389 protein_coding protein_coding MGP_C57BL6NJ_T0031015.1 MGP_C57BL6NJ_G0019053.1 mouse_genomes_project 11 76286925 76303170 + MGP_C57BL6NJ_P0031015 Olfr20 protein_coding protein_coding MGP_C57BL6NJ_T0031016.1 MGP_C57BL6NJ_G0019053.1 mouse_genomes_project 11 76289821 76303266 + MGP_C57BL6NJ_P0031016 Olfr20 protein_coding protein_coding MGP_C57BL6NJ_T0028193.1 MGP_C57BL6NJ_G0018360.1 mouse_genomes_project 11 892190 899834 - MGP_C57BL6NJ_P0028193 Slc35e4 protein_coding protein_coding MGP_C57BL6NJ_T0028194.1 MGP_C57BL6NJ_G0018360.1 mouse_genomes_project 11 892191 899834 - MGP_C57BL6NJ_P0028194 Slc35e4 protein_coding protein_coding MGP_C57BL6NJ_T0012749.1 MGP_C57BL6NJ_G0010794.1 mouse_genomes_project 11 589164 590002 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030807.1 MGP_C57BL6NJ_G0019005.1 mouse_genomes_project 11 73406794 73413814 + MGP_C57BL6NJ_P0030807 Kif1c protein_coding protein_coding MGP_C57BL6NJ_T0030808.1 MGP_C57BL6NJ_G0019005.1 mouse_genomes_project 11 73406794 73441849 + MGP_C57BL6NJ_P0030808 Kif1c protein_coding protein_coding MGP_C57BL6NJ_T0030809.1 MGP_C57BL6NJ_G0019005.1 mouse_genomes_project 11 73406807 73440272 + MGP_C57BL6NJ_P0030809 Kif1c protein_coding protein_coding MGP_C57BL6NJ_T0030810.1 MGP_C57BL6NJ_G0019005.1 mouse_genomes_project 11 73406822 73440309 + MGP_C57BL6NJ_P0030810 Kif1c protein_coding protein_coding MGP_C57BL6NJ_T0030811.1 MGP_C57BL6NJ_G0019005.1 mouse_genomes_project 11 73406896 73441849 + MGP_C57BL6NJ_P0030811 Kif1c protein_coding protein_coding MGP_C57BL6NJ_T0030936.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75294886 75333156 - MGP_C57BL6NJ_P0030936 Spns2 protein_coding protein_coding MGP_C57BL6NJ_T0030937.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75294890 75297790 - Spns2 protein_coding retained_intron MGP_C57BL6NJ_T0030938.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75295856 75299599 - Spns2 protein_coding processed_transcript MGP_C57BL6NJ_T0030939.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75295980 75299870 - MGP_C57BL6NJ_P0030939 Spns2 protein_coding protein_coding MGP_C57BL6NJ_T0030940.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75296089 75297367 - Spns2 protein_coding processed_transcript MGP_C57BL6NJ_T0030941.1 MGP_C57BL6NJ_G0019032.1 mouse_genomes_project 11 75302277 75318274 - Spns2 protein_coding processed_transcript MGP_C57BL6NJ_T0029730.1 MGP_C57BL6NJ_G0018760.1 mouse_genomes_project 11 60315015 60316417 - MGP_C57BL6NJ_P0029730 protein_coding protein_coding MGP_C57BL6NJ_T0032721.1 MGP_C57BL6NJ_G0019500.1 mouse_genomes_project 11 105462079 105463063 - MGP_C57BL6NJ_P0032721 Krtap4-7 protein_coding protein_coding MGP_C57BL6NJ_T0006416.1 MGP_C57BL6NJ_G0005356.1 mouse_genomes_project 11 64799448 64803791 + Gm27194 lincRNA lincRNA MGP_C57BL6NJ_T0028156.1 MGP_C57BL6NJ_G0018352.1 mouse_genomes_project 11 431796 437679 + MGP_C57BL6NJ_P0028156 Pla2g3 protein_coding protein_coding MGP_C57BL6NJ_T0028157.1 MGP_C57BL6NJ_G0018352.1 mouse_genomes_project 11 431811 442859 + MGP_C57BL6NJ_P0028157 Pla2g3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028158.1 MGP_C57BL6NJ_G0018352.1 mouse_genomes_project 11 432502 437676 + Pla2g3 protein_coding retained_intron MGP_C57BL6NJ_T0102732.1 MGP_C57BL6NJ_G0040527.1 mouse_genomes_project 11 46930125 46930398 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0032337.1 MGP_C57BL6NJ_G0019392.1 mouse_genomes_project 11 101519907 101553543 + MGP_C57BL6NJ_P0032337 Ttll6 protein_coding protein_coding MGP_C57BL6NJ_T0032338.1 MGP_C57BL6NJ_G0019392.1 mouse_genomes_project 11 101520340 101553543 + MGP_C57BL6NJ_P0032338 Ttll6 protein_coding protein_coding MGP_C57BL6NJ_T0013041.1 MGP_C57BL6NJ_G0011086.1 mouse_genomes_project 11 106167387 106171506 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009934.1 MGP_C57BL6NJ_G0008019.1 mouse_genomes_project 11 103200540 103200611 - Gm24158 miRNA miRNA MGP_C57BL6NJ_T0028858.1 MGP_C57BL6NJ_G0018512.1 mouse_genomes_project 11 30006631 30031069 - MGP_C57BL6NJ_P0028858 Erlec1 protein_coding protein_coding MGP_C57BL6NJ_T0028859.1 MGP_C57BL6NJ_G0018512.1 mouse_genomes_project 11 30007608 30025386 - MGP_C57BL6NJ_P0028859 Erlec1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028860.1 MGP_C57BL6NJ_G0018512.1 mouse_genomes_project 11 30011895 30025002 - MGP_C57BL6NJ_P0028860 Erlec1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0028861.1 MGP_C57BL6NJ_G0018512.1 mouse_genomes_project 11 30019598 30025119 - Erlec1 protein_coding retained_intron MGP_C57BL6NJ_T0028932.1 MGP_C57BL6NJ_G0018530.1 mouse_genomes_project 11 31572684 31656922 + MGP_C57BL6NJ_P0028932 Sh3pxd2b protein_coding protein_coding MGP_C57BL6NJ_T0028933.1 MGP_C57BL6NJ_G0018530.1 mouse_genomes_project 11 31572704 31617467 + Sh3pxd2b protein_coding retained_intron MGP_C57BL6NJ_T0009918.1 MGP_C57BL6NJ_G0008003.1 mouse_genomes_project 11 86800911 86800974 - Mir7679 miRNA miRNA MGP_C57BL6NJ_T0032747.1 MGP_C57BL6NJ_G0019525.1 mouse_genomes_project 11 105906856 105913966 - MGP_C57BL6NJ_P0032747 Krt33a protein_coding protein_coding MGP_C57BL6NJ_T0032748.1 MGP_C57BL6NJ_G0019525.1 mouse_genomes_project 11 105910119 105911741 - Krt33a protein_coding processed_transcript MGP_C57BL6NJ_T0032030.1 MGP_C57BL6NJ_G0019313.1 mouse_genomes_project 11 92479860 92496311 + MGP_C57BL6NJ_P0032030 Vezf1 protein_coding protein_coding MGP_C57BL6NJ_T0032031.1 MGP_C57BL6NJ_G0019313.1 mouse_genomes_project 11 92485169 92496311 + MGP_C57BL6NJ_P0032031 Vezf1 protein_coding protein_coding MGP_C57BL6NJ_T0012894.1 MGP_C57BL6NJ_G0010939.1 mouse_genomes_project 11 49596819 49597129 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017757.1 MGP_C57BL6NJ_G0015619.1 mouse_genomes_project 11 128455335 128457119 - 2900052L18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0032046.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 92797333 93197987 - MGP_C57BL6NJ_P0032046 Msi2 protein_coding protein_coding MGP_C57BL6NJ_T0032047.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 92803867 93197918 - MGP_C57BL6NJ_P0032047 Msi2 protein_coding protein_coding MGP_C57BL6NJ_T0032048.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 92825503 93064444 - Msi2 protein_coding retained_intron MGP_C57BL6NJ_T0032049.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 92949503 93197927 - Msi2 protein_coding retained_intron MGP_C57BL6NJ_T0032050.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 93064351 93198169 - MGP_C57BL6NJ_P0032050 Msi2 protein_coding protein_coding MGP_C57BL6NJ_T0032051.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 93164290 93197987 - MGP_C57BL6NJ_P0032051 Msi2 protein_coding protein_coding MGP_C57BL6NJ_T0032052.1 MGP_C57BL6NJ_G0019317.1 mouse_genomes_project 11 93191479 93197987 - Msi2 protein_coding processed_transcript MGP_C57BL6NJ_T0101077.1 MGP_C57BL6NJ_G0039123.1 mouse_genomes_project 11 103342429 103342566 - Snora21 snoRNA snoRNA MGP_C57BL6NJ_T0030143.1 MGP_C57BL6NJ_G0018857.1 mouse_genomes_project 11 64938313 64954036 + MGP_C57BL6NJ_P0030143 Tvp23b protein_coding protein_coding MGP_C57BL6NJ_T0030144.1 MGP_C57BL6NJ_G0018857.1 mouse_genomes_project 11 64938348 64950903 + Tvp23b protein_coding processed_transcript MGP_C57BL6NJ_T0030145.1 MGP_C57BL6NJ_G0018857.1 mouse_genomes_project 11 64938472 64944205 + Tvp23b protein_coding processed_transcript MGP_C57BL6NJ_T0030146.1 MGP_C57BL6NJ_G0018857.1 mouse_genomes_project 11 64942520 64976833 + Tvp23b protein_coding processed_transcript MGP_C57BL6NJ_T0029148.1 MGP_C57BL6NJ_G0018592.1 mouse_genomes_project 11 46842049 46859357 + MGP_C57BL6NJ_P0029148 BC053393 protein_coding protein_coding MGP_C57BL6NJ_T0033799.1 MGP_C57BL6NJ_G0019759.1 mouse_genomes_project 11 122517454 122529309 - MGP_C57BL6NJ_P0033799 Cd300ld protein_coding protein_coding MGP_C57BL6NJ_T0012767.1 MGP_C57BL6NJ_G0010812.1 mouse_genomes_project 11 3927000 3927986 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0030158.1 MGP_C57BL6NJ_G0018864.1 mouse_genomes_project 11 66573470 66670214 + MGP_C57BL6NJ_P0030158 Hs3st3a1 protein_coding protein_coding MGP_C57BL6NJ_T0003374.1 MGP_C57BL6NJ_G0003112.1 mouse_genomes_project 11 73310373 73312373 - Gm12316 antisense antisense MGP_C57BL6NJ_T0032251.1 MGP_C57BL6NJ_G0019368.1 mouse_genomes_project 11 100274326 100289423 - MGP_C57BL6NJ_P0032251 Pdk2 protein_coding protein_coding MGP_C57BL6NJ_T0032252.1 MGP_C57BL6NJ_G0019368.1 mouse_genomes_project 11 100275022 100276645 - Pdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0032253.1 MGP_C57BL6NJ_G0019368.1 mouse_genomes_project 11 100276796 100277493 - Pdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0032254.1 MGP_C57BL6NJ_G0019368.1 mouse_genomes_project 11 100277722 100288627 - Pdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0032255.1 MGP_C57BL6NJ_G0019368.1 mouse_genomes_project 11 100279982 100288944 - Pdk2 protein_coding processed_transcript MGP_C57BL6NJ_T0029022.1 MGP_C57BL6NJ_G0018558.1 mouse_genomes_project 11 40584948 40591328 + MGP_C57BL6NJ_P0029022 Nudcd2 protein_coding protein_coding MGP_C57BL6NJ_T0029023.1 MGP_C57BL6NJ_G0018558.1 mouse_genomes_project 11 40585025 40587694 + Nudcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0029024.1 MGP_C57BL6NJ_G0018558.1 mouse_genomes_project 11 40585227 40590832 + MGP_C57BL6NJ_P0029024 Nudcd2 protein_coding protein_coding MGP_C57BL6NJ_T0029025.1 MGP_C57BL6NJ_G0018558.1 mouse_genomes_project 11 40585486 40590765 + Nudcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0029026.1 MGP_C57BL6NJ_G0018558.1 mouse_genomes_project 11 40587587 40590546 + Nudcd2 protein_coding processed_transcript MGP_C57BL6NJ_T0012977.1 MGP_C57BL6NJ_G0011022.1 mouse_genomes_project 11 79785459 79785962 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0029029.1 MGP_C57BL6NJ_G0018560.1 mouse_genomes_project 11 41851971 41951101 - MGP_C57BL6NJ_P0029029 Gabrg2 protein_coding protein_coding MGP_C57BL6NJ_T0029030.1 MGP_C57BL6NJ_G0018560.1 mouse_genomes_project 11 41853477 41950776 - MGP_C57BL6NJ_P0029030 Gabrg2 protein_coding protein_coding MGP_C57BL6NJ_T0029031.1 MGP_C57BL6NJ_G0018560.1 mouse_genomes_project 11 41853479 41859279 - Gabrg2 protein_coding retained_intron MGP_C57BL6NJ_T0029032.1 MGP_C57BL6NJ_G0018560.1 mouse_genomes_project 11 41857222 41950600 - MGP_C57BL6NJ_P0029032 Gabrg2 protein_coding protein_coding MGP_C57BL6NJ_T0030966.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843641 75880606 + MGP_C57BL6NJ_P0030966 Atp2a3 protein_coding protein_coding MGP_C57BL6NJ_T0030967.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843641 75880605 + MGP_C57BL6NJ_P0030967 Atp2a3 protein_coding protein_coding MGP_C57BL6NJ_T0030968.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843641 75880605 + MGP_C57BL6NJ_P0030968 Atp2a3 protein_coding protein_coding MGP_C57BL6NJ_T0030969.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843641 75880606 + MGP_C57BL6NJ_P0030969 Atp2a3 protein_coding protein_coding MGP_C57BL6NJ_T0030970.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843641 75880605 + MGP_C57BL6NJ_P0030970 Atp2a3 protein_coding protein_coding MGP_C57BL6NJ_T0030971.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75843762 75853201 + Atp2a3 protein_coding retained_intron MGP_C57BL6NJ_T0030972.1 MGP_C57BL6NJ_G0019038.1 mouse_genomes_project 11 75869658 75871107 + Atp2a3 protein_coding processed_transcript MGP_C57BL6NJ_T0017672.1 MGP_C57BL6NJ_G0015574.1 mouse_genomes_project 11 71879320 71881501 + processed_transcript processed_transcript MGP_C57BL6NJ_T0017673.1 MGP_C57BL6NJ_G0015574.1 mouse_genomes_project 11 71879668 71880235 + processed_transcript processed_transcript MGP_C57BL6NJ_T0012764.1 MGP_C57BL6NJ_G0010809.1 mouse_genomes_project 11 3673888 3674176 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0028602.1 MGP_C57BL6NJ_G0018455.1 mouse_genomes_project 11 18201224 18311107 + MGP_C57BL6NJ_P0028602 Spred2 protein_coding protein_coding MGP_C57BL6NJ_T0028603.1 MGP_C57BL6NJ_G0018455.1 mouse_genomes_project 11 18201291 18309690 + MGP_C57BL6NJ_P0028603 Spred2 protein_coding protein_coding MGP_C57BL6NJ_T0028604.1 MGP_C57BL6NJ_G0018455.1 mouse_genomes_project 11 18231701 18298917 + MGP_C57BL6NJ_P0028604 Spred2 protein_coding protein_coding MGP_C57BL6NJ_T0028384.1 MGP_C57BL6NJ_G0018403.1 mouse_genomes_project 11 3038144 3044255 - MGP_C57BL6NJ_P0028384 Pold2 protein_coding protein_coding MGP_C57BL6NJ_T0028385.1 MGP_C57BL6NJ_G0018403.1 mouse_genomes_project 11 3038152 3039156 - Pold2 protein_coding retained_intron MGP_C57BL6NJ_T0028386.1 MGP_C57BL6NJ_G0018403.1 mouse_genomes_project 11 3040044 3043627 - MGP_C57BL6NJ_P0028386 Pold2 protein_coding protein_coding MGP_C57BL6NJ_T0028387.1 MGP_C57BL6NJ_G0018403.1 mouse_genomes_project 11 3040081 3042729 - Pold2 protein_coding retained_intron MGP_C57BL6NJ_T0028388.1 MGP_C57BL6NJ_G0018403.1 mouse_genomes_project 11 3041134 3044175 - Pold2 protein_coding processed_transcript MGP_C57BL6NJ_T0029625.1 MGP_C57BL6NJ_G0018719.1 mouse_genomes_project 11 56329876 56360032 - MGP_C57BL6NJ_P0029625 Slc36a2 protein_coding protein_coding MGP_C57BL6NJ_T0029626.1 MGP_C57BL6NJ_G0018719.1 mouse_genomes_project 11 56340494 56360032 - Slc36a2 protein_coding processed_transcript MGP_C57BL6NJ_T0030112.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679152 64698936 + MGP_C57BL6NJ_P0030112 Mmgt2 protein_coding protein_coding MGP_C57BL6NJ_T0030113.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679301 64694822 + Mmgt2 protein_coding retained_intron MGP_C57BL6NJ_T0030114.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679305 64698866 + Mmgt2 protein_coding processed_transcript MGP_C57BL6NJ_T0030115.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679308 64698798 + Mmgt2 protein_coding processed_transcript MGP_C57BL6NJ_T0030116.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679319 64699006 + MGP_C57BL6NJ_P0030116 Mmgt2 protein_coding protein_coding MGP_C57BL6NJ_T0030117.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679323 64699313 + MGP_C57BL6NJ_P0030117 Mmgt2 protein_coding protein_coding MGP_C57BL6NJ_T0030118.1 MGP_C57BL6NJ_G0018851.1 mouse_genomes_project 11 64679937 64700431 + MGP_C57BL6NJ_P0030118 Mmgt2 protein_coding protein_coding MGP_C57BL6NJ_T0013052.1 MGP_C57BL6NJ_G0011097.1 mouse_genomes_project 11 110298592 110298921 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099745.1 MGP_C57BL6NJ_G0037791.1 mouse_genomes_project 11 28280710 28280836 + Gm23109 snRNA snRNA MGP_C57BL6NJ_T0033504.1 MGP_C57BL6NJ_G0019694.1 mouse_genomes_project 11 112916235 112929183 + MGP_C57BL6NJ_P0033504 Tcam1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0033505.1 MGP_C57BL6NJ_G0019694.1 mouse_genomes_project 11 112916311 112929795 + MGP_C57BL6NJ_P0033505 Tcam1 protein_coding protein_coding MGP_C57BL6NJ_T0012811.1 MGP_C57BL6NJ_G0010856.1 mouse_genomes_project 11 18934640 18935263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003359.1 MGP_C57BL6NJ_G0003101.1 mouse_genomes_project 11 69523854 69527428 - 9430073C21Rik antisense antisense MGP_C57BL6NJ_T0030278.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71155484 71163185 + Myh10 protein_coding processed_transcript MGP_C57BL6NJ_T0030279.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71155840 71290224 + MGP_C57BL6NJ_P0030279 Myh10 protein_coding protein_coding MGP_C57BL6NJ_T0030280.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71156003 71163344 + Myh10 protein_coding processed_transcript MGP_C57BL6NJ_T0030281.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71156006 71219003 + MGP_C57BL6NJ_P0030281 Myh10 protein_coding protein_coding MGP_C57BL6NJ_T0030282.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71156037 71290204 + MGP_C57BL6NJ_P0030282 Myh10 protein_coding protein_coding MGP_C57BL6NJ_T0030283.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71156079 71242173 + Myh10 protein_coding retained_intron MGP_C57BL6NJ_T0030284.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71156241 71290216 + MGP_C57BL6NJ_P0030284 Myh10 protein_coding protein_coding MGP_C57BL6NJ_T0030285.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71255961 71262604 + Myh10 protein_coding processed_transcript MGP_C57BL6NJ_T0030286.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71285020 71286613 + Myh10 protein_coding processed_transcript MGP_C57BL6NJ_T0030287.1 MGP_C57BL6NJ_G0018896.1 mouse_genomes_project 11 71287955 71290136 + Myh10 protein_coding processed_transcript MGP_C57BL6NJ_T0030431.1 MGP_C57BL6NJ_G0018927.1 mouse_genomes_project 11 72124600 72130710 - MGP_C57BL6NJ_P0030431 Efnb3 protein_coding protein_coding MGP_C57BL6NJ_T0102741.1 MGP_C57BL6NJ_G0040536.1 mouse_genomes_project 11 61331093 61331468 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0031522.1 MGP_C57BL6NJ_G0019184.1 mouse_genomes_project 11 82486981 82510322 - MGP_C57BL6NJ_P0031522 Lgals9 protein_coding protein_coding MGP_C57BL6NJ_T0031523.1 MGP_C57BL6NJ_G0019184.1 mouse_genomes_project 11 82486986 82510300 - MGP_C57BL6NJ_P0031523 Lgals9 protein_coding protein_coding MGP_C57BL6NJ_T0031524.1 MGP_C57BL6NJ_G0019184.1 mouse_genomes_project 11 82487402 82510207 - MGP_C57BL6NJ_P0031524 Lgals9 protein_coding protein_coding MGP_C57BL6NJ_T0031525.1 MGP_C57BL6NJ_G0019184.1 mouse_genomes_project 11 82490888 82494338 - Lgals9 protein_coding retained_intron MGP_C57BL6NJ_T0009917.1 MGP_C57BL6NJ_G0008002.1 mouse_genomes_project 11 83330686 83330798 + Mir365-2 miRNA miRNA MGP_C57BL6NJ_T0030599.1 MGP_C57BL6NJ_G0018965.1 mouse_genomes_project 11 72597814 72606877 + MGP_C57BL6NJ_P0030599 Ctdnep1 protein_coding protein_coding MGP_C57BL6NJ_T0030600.1 MGP_C57BL6NJ_G0018965.1 mouse_genomes_project 11 72600584 72606388 + Ctdnep1 protein_coding retained_intron MGP_C57BL6NJ_T0030601.1 MGP_C57BL6NJ_G0018965.1 mouse_genomes_project 11 72605910 72606997 + Ctdnep1 protein_coding retained_intron MGP_C57BL6NJ_T0030602.1 MGP_C57BL6NJ_G0018965.1 mouse_genomes_project 11 72605930 72607242 + Ctdnep1 protein_coding processed_transcript MGP_C57BL6NJ_T0012882.1 MGP_C57BL6NJ_G0010927.1 mouse_genomes_project 11 44500993 44501153 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003366.1 MGP_C57BL6NJ_G0003106.1 mouse_genomes_project 11 71573376 71576080 - 9330160F10Rik antisense antisense MGP_C57BL6NJ_T0031384.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81412165 81460559 + MGP_C57BL6NJ_P0031384 Phf12 protein_coding protein_coding MGP_C57BL6NJ_T0031385.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81412213 81464884 + MGP_C57BL6NJ_P0031385 Phf12 protein_coding protein_coding MGP_C57BL6NJ_T0031386.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81456706 81460537 + MGP_C57BL6NJ_P0031386 Phf12 protein_coding protein_coding MGP_C57BL6NJ_T0031387.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81456920 81460306 + Phf12 protein_coding retained_intron MGP_C57BL6NJ_T0031388.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81456954 81460527 + MGP_C57BL6NJ_P0031388 Phf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031389.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81457021 81463192 + MGP_C57BL6NJ_P0031389 Phf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031390.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81457044 81460361 + MGP_C57BL6NJ_P0031390 Phf12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031391.1 MGP_C57BL6NJ_G0019150.1 mouse_genomes_project 11 81462454 81463922 + Phf12 protein_coding retained_intron MGP_C57BL6NJ_T0034533.1 MGP_C57BL6NJ_G0019903.1 mouse_genomes_project 11 128854197 128860442 - MGP_C57BL6NJ_P0034533 Alyref protein_coding protein_coding MGP_C57BL6NJ_T0034534.1 MGP_C57BL6NJ_G0019903.1 mouse_genomes_project 11 128856585 128857734 - Alyref protein_coding processed_transcript MGP_C57BL6NJ_T0034535.1 MGP_C57BL6NJ_G0019903.1 mouse_genomes_project 11 128857692 128860308 - Alyref protein_coding retained_intron MGP_C57BL6NJ_T0013043.1 MGP_C57BL6NJ_G0011088.1 mouse_genomes_project 11 107468862 107469099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099753.1 MGP_C57BL6NJ_G0037799.1 mouse_genomes_project 11 54364796 54364903 + Gm25930 snRNA snRNA MGP_C57BL6NJ_T0029759.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60651869 60666677 - MGP_C57BL6NJ_P0029759 Obscn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029760.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60651869 60666777 - MGP_C57BL6NJ_P0029760 Obscn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029761.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60651873 60820989 - MGP_C57BL6NJ_P0029761 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0029762.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60651876 60694596 - MGP_C57BL6NJ_P0029762 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0029763.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60667958 60820989 - MGP_C57BL6NJ_P0029763 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0029764.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60667958 60694569 - MGP_C57BL6NJ_P0029764 Obscn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0029765.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60667958 60821016 - MGP_C57BL6NJ_P0029765 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0029766.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60667959 60689041 - MGP_C57BL6NJ_P0029766 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0029767.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60668473 60820989 - MGP_C57BL6NJ_P0029767 Obscn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0029768.1 MGP_C57BL6NJ_G0018779.1 mouse_genomes_project 11 60734714 60741366 - MGP_C57BL6NJ_P0029768 Obscn protein_coding protein_coding MGP_C57BL6NJ_T0099774.1 MGP_C57BL6NJ_G0037820.1 mouse_genomes_project 11 83232425 83232533 - Gm24887 snRNA snRNA MGP_C57BL6NJ_T0006412.1 MGP_C57BL6NJ_G0005353.1 mouse_genomes_project 11 63818376 63821124 - A530017D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0006413.1 MGP_C57BL6NJ_G0005353.1 mouse_genomes_project 11 63819011 63821913 - A530017D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0017650.1 MGP_C57BL6NJ_G0015562.1 mouse_genomes_project 11 51251157 51254308 - Gm12198 processed_transcript processed_transcript MGP_C57BL6NJ_T0032015.1 MGP_C57BL6NJ_G0019308.1 mouse_genomes_project 11 92245893 92246880 - MGP_C57BL6NJ_P0032015 Olfr462 protein_coding protein_coding MGP_C57BL6NJ_T0003439.1 MGP_C57BL6NJ_G0003163.1 mouse_genomes_project 11 105222020 105222817 + A830036E02Rik antisense antisense MGP_C57BL6NJ_T0003440.1 MGP_C57BL6NJ_G0003163.1 mouse_genomes_project 11 105222307 105228163 + A830036E02Rik antisense antisense MGP_C57BL6NJ_T0003441.1 MGP_C57BL6NJ_G0003163.1 mouse_genomes_project 11 105222312 105223360 + A830036E02Rik antisense antisense MGP_C57BL6NJ_T0003442.1 MGP_C57BL6NJ_G0003163.1 mouse_genomes_project 11 105225036 105230562 + A830036E02Rik antisense antisense MGP_C57BL6NJ_T0102763.1 MGP_C57BL6NJ_G0040558.1 mouse_genomes_project 11 105485475 105485685 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0030493.1 MGP_C57BL6NJ_G0018939.1 mouse_genomes_project 11 72262642 72279055 - MGP_C57BL6NJ_P0030493 Tnfsfm13 protein_coding protein_coding MGP_C57BL6NJ_T0030496.1 MGP_C57BL6NJ_G0018939.1 mouse_genomes_project 11 72263113 72278767 - MGP_C57BL6NJ_P0030496 Tnfsfm13 protein_coding protein_coding MGP_C57BL6NJ_T0030497.1 MGP_C57BL6NJ_G0018939.1 mouse_genomes_project 11 72263296 72278766 - MGP_C57BL6NJ_P0030497 Tnfsfm13 protein_coding protein_coding MGP_C57BL6NJ_T0003269.1 MGP_C57BL6NJ_G0003025.1 mouse_genomes_project 11 4467560 4470698 - antisense antisense MGP_C57BL6NJ_T0102748.1 MGP_C57BL6NJ_G0040543.1 mouse_genomes_project 11 77112048 77117999 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006475.1 MGP_C57BL6NJ_G0005397.1 mouse_genomes_project 11 93222387 93227141 - lincRNA lincRNA MGP_C57BL6NJ_T0099325.1 MGP_C57BL6NJ_G0037388.1 mouse_genomes_project 11 92041509 92047925 + sense_intronic sense_intronic MGP_C57BL6NJ_T0099326.1 MGP_C57BL6NJ_G0037388.1 mouse_genomes_project 11 92042236 92047583 + sense_intronic sense_intronic MGP_C57BL6NJ_T0029682.1 MGP_C57BL6NJ_G0018737.1 mouse_genomes_project 11 59659627 59674099 + MGP_C57BL6NJ_P0029682 Igtp protein_coding protein_coding MGP_C57BL6NJ_T0029683.1 MGP_C57BL6NJ_G0018737.1 mouse_genomes_project 11 59659627 59674125 + MGP_C57BL6NJ_P0029683 Igtp protein_coding protein_coding MGP_C57BL6NJ_T0029684.1 MGP_C57BL6NJ_G0018737.1 mouse_genomes_project 11 59659627 59674109 + MGP_C57BL6NJ_P0029684 Igtp protein_coding protein_coding MGP_C57BL6NJ_T0032019.1 MGP_C57BL6NJ_G0019311.1 mouse_genomes_project 11 92378264 92386315 - MGP_C57BL6NJ_P0032019 Dynll2 protein_coding protein_coding MGP_C57BL6NJ_T0032020.1 MGP_C57BL6NJ_G0019311.1 mouse_genomes_project 11 92378264 92382796 - MGP_C57BL6NJ_P0032020 Dynll2 protein_coding protein_coding MGP_C57BL6NJ_T0032021.1 MGP_C57BL6NJ_G0019311.1 mouse_genomes_project 11 92378264 92385367 - MGP_C57BL6NJ_P0032021 Dynll2 protein_coding protein_coding MGP_C57BL6NJ_T0032022.1 MGP_C57BL6NJ_G0019311.1 mouse_genomes_project 11 92378894 92386138 - MGP_C57BL6NJ_P0032022 Dynll2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0031490.1 MGP_C57BL6NJ_G0019173.1 mouse_genomes_project 11 81986374 81987869 + Vtn protein_coding retained_intron MGP_C57BL6NJ_T0031491.1 MGP_C57BL6NJ_G0019173.1 mouse_genomes_project 11 81986403 81989608 + MGP_C57BL6NJ_P0031491 Vtn protein_coding protein_coding MGP_C57BL6NJ_T0031492.1 MGP_C57BL6NJ_G0019173.1 mouse_genomes_project 11 81986455 81987528 + Vtn protein_coding retained_intron MGP_C57BL6NJ_T0031493.1 MGP_C57BL6NJ_G0019173.1 mouse_genomes_project 11 81987889 81989506 + Vtn protein_coding retained_intron MGP_C57BL6NJ_T0032332.1 MGP_C57BL6NJ_G0019390.1 mouse_genomes_project 11 101423867 101430730 - MGP_C57BL6NJ_P0032332 Atp5g1 protein_coding protein_coding MGP_C57BL6NJ_T0032333.1 MGP_C57BL6NJ_G0019390.1 mouse_genomes_project 11 101423882 101430097 - MGP_C57BL6NJ_P0032333 Atp5g1 protein_coding protein_coding MGP_C57BL6NJ_T0032334.1 MGP_C57BL6NJ_G0019390.1 mouse_genomes_project 11 101428089 101430679 - MGP_C57BL6NJ_P0032334 Atp5g1 protein_coding protein_coding MGP_C57BL6NJ_T0032335.1 MGP_C57BL6NJ_G0019390.1 mouse_genomes_project 11 101428089 101430641 - MGP_C57BL6NJ_P0032335 Atp5g1 protein_coding protein_coding MGP_C57BL6NJ_T0012943.1 MGP_C57BL6NJ_G0010988.1 mouse_genomes_project 11 64291392 64291699 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0009892.1 MGP_C57BL6NJ_G0007977.1 mouse_genomes_project 11 72492286 72492349 - Mir6924 miRNA miRNA MGP_C57BL6NJ_T0032712.1 MGP_C57BL6NJ_G0019491.1 mouse_genomes_project 11 105366923 105367223 - MGP_C57BL6NJ_P0032712 Gm11939 protein_coding protein_coding MGP_C57BL6NJ_T0029128.1 MGP_C57BL6NJ_G0018586.1 mouse_genomes_project 11 46480143 46484483 + MGP_C57BL6NJ_P0029128 Fndc9 protein_coding protein_coding MGP_C57BL6NJ_T0101014.1 MGP_C57BL6NJ_G0039060.1 mouse_genomes_project 11 5356699 5356774 - Gm24051 snoRNA snoRNA MGP_C57BL6NJ_T0028994.1 MGP_C57BL6NJ_G0018552.1 mouse_genomes_project 11 35248996 35250499 - MGP_C57BL6NJ_P0028994 Fbll1 protein_coding protein_coding MGP_C57BL6NJ_T0028562.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14463535 14471490 - MGP_C57BL6NJ_P0028562 Sec61g protein_coding protein_coding MGP_C57BL6NJ_T0028563.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14464392 14471172 - MGP_C57BL6NJ_P0028563 Sec61g protein_coding protein_coding MGP_C57BL6NJ_T0028564.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14464643 14471490 - MGP_C57BL6NJ_P0028564 Sec61g protein_coding protein_coding MGP_C57BL6NJ_T0028565.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14464643 14471490 - MGP_C57BL6NJ_P0028565 Sec61g protein_coding protein_coding MGP_C57BL6NJ_T0028566.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14464648 14468050 - Sec61g protein_coding retained_intron MGP_C57BL6NJ_T0028567.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14464656 14471075 - MGP_C57BL6NJ_P0028567 Sec61g protein_coding protein_coding MGP_C57BL6NJ_T0028568.1 MGP_C57BL6NJ_G0018444.1 mouse_genomes_project 11 14469097 14471138 - Sec61g protein_coding retained_intron MGP_C57BL6NJ_T0034005.1 MGP_C57BL6NJ_G0019800.1 mouse_genomes_project 11 123670924 123704001 + MGP_C57BL6NJ_P0034005 Sap30bp protein_coding protein_coding MGP_C57BL6NJ_T0034006.1 MGP_C57BL6NJ_G0019800.1 mouse_genomes_project 11 123671215 123695043 + Sap30bp protein_coding processed_transcript MGP_C57BL6NJ_T0034007.1 MGP_C57BL6NJ_G0019800.1 mouse_genomes_project 11 123671279 123676051 + Sap30bp protein_coding processed_transcript MGP_C57BL6NJ_T0034008.1 MGP_C57BL6NJ_G0019800.1 mouse_genomes_project 11 123671316 123702811 + Sap30bp protein_coding processed_transcript MGP_C57BL6NJ_T0029753.1 MGP_C57BL6NJ_G0018775.1 mouse_genomes_project 11 60606983 60607597 + MGP_C57BL6NJ_P0029753 Hist3h2ba protein_coding protein_coding MGP_C57BL6NJ_T0030586.1 MGP_C57BL6NJ_G0018963.1 mouse_genomes_project 11 72580538 72582684 + MGP_C57BL6NJ_P0030586 Cldn7 protein_coding protein_coding MGP_C57BL6NJ_T0030587.1 MGP_C57BL6NJ_G0018963.1 mouse_genomes_project 11 72581221 72583604 + MGP_C57BL6NJ_P0030587 Cldn7 protein_coding protein_coding MGP_C57BL6NJ_T0030588.1 MGP_C57BL6NJ_G0018963.1 mouse_genomes_project 11 72582632 72583367 + MGP_C57BL6NJ_P0030588 Cldn7 protein_coding protein_coding MGP_C57BL6NJ_T0033467.1 MGP_C57BL6NJ_G0019685.1 mouse_genomes_project 11 112713637 112788100 + MGP_C57BL6NJ_P0033467 Map3k3 protein_coding protein_coding MGP_C57BL6NJ_T0033468.1 MGP_C57BL6NJ_G0019685.1 mouse_genomes_project 11 112783865 112785032 + Map3k3 protein_coding processed_transcript MGP_C57BL6NJ_T0033469.1 MGP_C57BL6NJ_G0019685.1 mouse_genomes_project 11 112784717 112786794 + Map3k3 protein_coding processed_transcript MGP_C57BL6NJ_T0031746.1 MGP_C57BL6NJ_G0019246.1 mouse_genomes_project 11 87533202 87538392 - MGP_C57BL6NJ_P0031746 Ccl6 protein_coding protein_coding MGP_C57BL6NJ_T0031747.1 MGP_C57BL6NJ_G0019246.1 mouse_genomes_project 11 87533715 87535196 - Ccl6 protein_coding retained_intron MGP_C57BL6NJ_T0031748.1 MGP_C57BL6NJ_G0019246.1 mouse_genomes_project 11 87534793 87538280 - Ccl6 protein_coding retained_intron MGP_C57BL6NJ_T0012851.1 MGP_C57BL6NJ_G0010896.1 mouse_genomes_project 11 29604724 29605441 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000969.1 MGP_C57BL6NJ_G0000879.1 mouse_genomes_project 11 7174680 7175043 - TEC TEC MGP_C57BL6NJ_T0017704.1 MGP_C57BL6NJ_G0015591.1 mouse_genomes_project 11 102301144 102313612 - Gm11523 processed_transcript lincRNA MGP_C57BL6NJ_T0017705.1 MGP_C57BL6NJ_G0015591.1 mouse_genomes_project 11 102301437 102313618 - Gm11523 processed_transcript lincRNA MGP_C57BL6NJ_T0017706.1 MGP_C57BL6NJ_G0015591.1 mouse_genomes_project 11 102301566 102313598 - Gm11523 processed_transcript antisense MGP_C57BL6NJ_T0034305.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126491976 126504766 - MGP_C57BL6NJ_P0034305 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0034306.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126491976 126504732 - MGP_C57BL6NJ_P0034306 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0034307.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126491977 126504703 - MGP_C57BL6NJ_P0034307 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0034308.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126493323 126504732 - MGP_C57BL6NJ_P0034308 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0034309.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126493323 126501474 - MGP_C57BL6NJ_P0034309 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0034310.1 MGP_C57BL6NJ_G0019859.1 mouse_genomes_project 11 126493323 126504703 - MGP_C57BL6NJ_P0034310 Cant1 protein_coding protein_coding MGP_C57BL6NJ_T0028217.1 MGP_C57BL6NJ_G0018366.1 mouse_genomes_project 11 1067110 1083332 + MGP_C57BL6NJ_P0028217 Sec14l3 protein_coding protein_coding MGP_C57BL6NJ_T0028218.1 MGP_C57BL6NJ_G0018366.1 mouse_genomes_project 11 1067160 1075181 + Sec14l3 protein_coding retained_intron MGP_C57BL6NJ_T0028219.1 MGP_C57BL6NJ_G0018366.1 mouse_genomes_project 11 1067221 1081921 + Sec14l3 protein_coding processed_transcript MGP_C57BL6NJ_T0028220.1 MGP_C57BL6NJ_G0018366.1 mouse_genomes_project 11 1067221 1081921 + Sec14l3 protein_coding processed_transcript MGP_C57BL6NJ_T0028221.1 MGP_C57BL6NJ_G0018366.1 mouse_genomes_project 11 1077141 1082357 + Sec14l3 protein_coding processed_transcript MGP_C57BL6NJ_T0003709.1 MGP_C57BL6NJ_G0003359.1 mouse_genomes_project 14 53227777 53241005 - Gm16573 antisense antisense MGP_C57BL6NJ_T0003710.1 MGP_C57BL6NJ_G0003359.1 mouse_genomes_project 14 53231304 53241021 - Gm16573 antisense antisense MGP_C57BL6NJ_T0003711.1 MGP_C57BL6NJ_G0003359.1 mouse_genomes_project 14 53238030 53241021 - Gm16573 antisense antisense MGP_C57BL6NJ_T0039292.1 MGP_C57BL6NJ_G0021528.1 mouse_genomes_project 14 26647965 26659823 - MGP_C57BL6NJ_P0039292 1700024G13Rik protein_coding protein_coding MGP_C57BL6NJ_T0040836.1 MGP_C57BL6NJ_G0022077.1 mouse_genomes_project 14 124987311 124996518 - MGP_C57BL6NJ_P0040836 Zic5 protein_coding protein_coding MGP_C57BL6NJ_T0040837.1 MGP_C57BL6NJ_G0022077.1 mouse_genomes_project 14 124989689 124990638 - Zic5 protein_coding processed_transcript MGP_C57BL6NJ_T0013277.1 MGP_C57BL6NJ_G0011322.1 mouse_genomes_project 14 122063 122886 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039645.1 MGP_C57BL6NJ_G0021664.1 mouse_genomes_project 14 46882747 46883879 - MGP_C57BL6NJ_P0039645 Olfr750 protein_coding protein_coding MGP_C57BL6NJ_T0038789.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274268 11290687 + MGP_C57BL6NJ_P0038789 Nkiras1 protein_coding protein_coding MGP_C57BL6NJ_T0038790.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274318 11286787 + MGP_C57BL6NJ_P0038790 Nkiras1 protein_coding protein_coding MGP_C57BL6NJ_T0038791.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274336 11284067 + Nkiras1 protein_coding retained_intron MGP_C57BL6NJ_T0038792.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274343 11285149 + Nkiras1 protein_coding processed_transcript MGP_C57BL6NJ_T0038793.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274359 11287182 + MGP_C57BL6NJ_P0038793 Nkiras1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038794.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274370 11283822 + Nkiras1 protein_coding retained_intron MGP_C57BL6NJ_T0038795.1 MGP_C57BL6NJ_G0021405.1 mouse_genomes_project 14 11274396 11285290 + Nkiras1 protein_coding processed_transcript MGP_C57BL6NJ_T0003689.1 MGP_C57BL6NJ_G0003341.1 mouse_genomes_project 14 28923391 28924361 + Gm17110 antisense antisense MGP_C57BL6NJ_T0039378.1 MGP_C57BL6NJ_G0021566.1 mouse_genomes_project 14 30645496 30647471 + MGP_C57BL6NJ_P0039378 4930474N05Rik protein_coding protein_coding MGP_C57BL6NJ_T0039379.1 MGP_C57BL6NJ_G0021566.1 mouse_genomes_project 14 30645546 30650728 + MGP_C57BL6NJ_P0039379 4930474N05Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099925.1 MGP_C57BL6NJ_G0037971.1 mouse_genomes_project 14 54604038 54604185 - Gm22738 snRNA snRNA MGP_C57BL6NJ_T0039854.1 MGP_C57BL6NJ_G0021717.1 mouse_genomes_project 14 51010519 51032585 - MGP_C57BL6NJ_P0039854 4931414P19Rik protein_coding protein_coding MGP_C57BL6NJ_T0040496.1 MGP_C57BL6NJ_G0021948.1 mouse_genomes_project 14 68146915 68151640 + MGP_C57BL6NJ_P0040496 Nudt18 protein_coding protein_coding MGP_C57BL6NJ_T0040629.1 MGP_C57BL6NJ_G0021989.1 mouse_genomes_project 14 75254946 75851445 + MGP_C57BL6NJ_P0040629 Enox1 protein_coding protein_coding MGP_C57BL6NJ_T0002773.1 MGP_C57BL6NJ_G0002644.1 mouse_genomes_project 14 49822640 49823209 + MGP_C57BL6NJ_P0002773 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039654.1 MGP_C57BL6NJ_G0021671.1 mouse_genomes_project 14 47037944 47038382 - MGP_C57BL6NJ_P0039654 Ang2 protein_coding protein_coding MGP_C57BL6NJ_T0040485.1 MGP_C57BL6NJ_G0021942.1 mouse_genomes_project 14 68021084 68032378 + MGP_C57BL6NJ_P0040485 Phyhip protein_coding protein_coding MGP_C57BL6NJ_T0040486.1 MGP_C57BL6NJ_G0021942.1 mouse_genomes_project 14 68022131 68026895 + MGP_C57BL6NJ_P0040486 Phyhip protein_coding protein_coding MGP_C57BL6NJ_T0040663.1 MGP_C57BL6NJ_G0022007.1 mouse_genomes_project 14 78082981 78087519 - MGP_C57BL6NJ_P0040663 Pcdh8 protein_coding protein_coding MGP_C57BL6NJ_T0040664.1 MGP_C57BL6NJ_G0022007.1 mouse_genomes_project 14 78082986 78087519 - MGP_C57BL6NJ_P0040664 Pcdh8 protein_coding protein_coding MGP_C57BL6NJ_T0040665.1 MGP_C57BL6NJ_G0022007.1 mouse_genomes_project 14 78082990 78087519 - Pcdh8 protein_coding retained_intron MGP_C57BL6NJ_T0040666.1 MGP_C57BL6NJ_G0022007.1 mouse_genomes_project 14 78085238 78087411 - Pcdh8 protein_coding processed_transcript MGP_C57BL6NJ_T0038979.1 MGP_C57BL6NJ_G0021453.1 mouse_genomes_project 14 19362223 19832325 + MGP_C57BL6NJ_P0038979 Anxa11 protein_coding protein_coding MGP_C57BL6NJ_T0038980.1 MGP_C57BL6NJ_G0021453.1 mouse_genomes_project 14 19362250 19821712 + Anxa11 protein_coding retained_intron MGP_C57BL6NJ_T0038981.1 MGP_C57BL6NJ_G0021453.1 mouse_genomes_project 14 19362250 19832325 + Anxa11 protein_coding retained_intron MGP_C57BL6NJ_T0038982.1 MGP_C57BL6NJ_G0021453.1 mouse_genomes_project 14 19362250 19822105 + MGP_C57BL6NJ_P0038982 Anxa11 protein_coding protein_coding MGP_C57BL6NJ_T0099920.1 MGP_C57BL6NJ_G0037966.1 mouse_genomes_project 14 50855569 50855676 - Gm24424 snRNA snRNA MGP_C57BL6NJ_T0002689.1 MGP_C57BL6NJ_G0002569.1 mouse_genomes_project 14 50596894 50596955 + MGP_C57BL6NJ_P0002689 Traj16 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0010191.1 MGP_C57BL6NJ_G0008276.1 mouse_genomes_project 14 42411138 42411237 - Mir378c miRNA miRNA MGP_C57BL6NJ_T0039443.1 MGP_C57BL6NJ_G0021594.1 mouse_genomes_project 14 40788326 40873481 - MGP_C57BL6NJ_P0039443 Fermt2 protein_coding protein_coding MGP_C57BL6NJ_T0039444.1 MGP_C57BL6NJ_G0021594.1 mouse_genomes_project 14 40799357 40808098 - MGP_C57BL6NJ_P0039444 Fermt2 protein_coding protein_coding MGP_C57BL6NJ_T0039445.1 MGP_C57BL6NJ_G0021594.1 mouse_genomes_project 14 40806134 40873327 - MGP_C57BL6NJ_P0039445 Fermt2 protein_coding protein_coding MGP_C57BL6NJ_T0039446.1 MGP_C57BL6NJ_G0021594.1 mouse_genomes_project 14 40846993 40873149 - Fermt2 protein_coding processed_transcript MGP_C57BL6NJ_T0002723.1 MGP_C57BL6NJ_G0002601.1 mouse_genomes_project 14 50603678 50603715 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0006841.1 MGP_C57BL6NJ_G0005652.1 mouse_genomes_project 14 20161885 20172352 + lincRNA lincRNA MGP_C57BL6NJ_T0011633.1 MGP_C57BL6NJ_G0009718.1 mouse_genomes_project 14 50502358 50502698 + Gm23704 misc_RNA misc_RNA MGP_C57BL6NJ_T0013313.1 MGP_C57BL6NJ_G0011358.1 mouse_genomes_project 14 41300854 41301233 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039551.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44665208 44725157 - MGP_C57BL6NJ_P0039551 Exoc5 protein_coding protein_coding MGP_C57BL6NJ_T0039552.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44666817 44724900 - MGP_C57BL6NJ_P0039552 Exoc5 protein_coding protein_coding MGP_C57BL6NJ_T0039553.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44668533 44673476 - Exoc5 protein_coding retained_intron MGP_C57BL6NJ_T0039554.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44669815 44676954 - MGP_C57BL6NJ_P0039554 Exoc5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039555.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44670521 44677218 - Exoc5 protein_coding retained_intron MGP_C57BL6NJ_T0039556.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44683260 44689078 - Exoc5 protein_coding retained_intron MGP_C57BL6NJ_T0039557.1 MGP_C57BL6NJ_G0021615.1 mouse_genomes_project 14 44688530 44704973 - MGP_C57BL6NJ_P0039557 Exoc5 protein_coding protein_coding MGP_C57BL6NJ_T0040796.1 MGP_C57BL6NJ_G0022059.1 mouse_genomes_project 14 121080895 121125045 + MGP_C57BL6NJ_P0040796 Dnajc3 protein_coding protein_coding MGP_C57BL6NJ_T0039278.1 MGP_C57BL6NJ_G0021525.1 mouse_genomes_project 14 26429981 26452652 - MGP_C57BL6NJ_P0039278 Timm23 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039279.1 MGP_C57BL6NJ_G0021525.1 mouse_genomes_project 14 26440862 26452577 - Timm23 protein_coding retained_intron MGP_C57BL6NJ_T0039726.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48178945 48240548 + MGP_C57BL6NJ_P0039726 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039727.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48179144 48239698 + MGP_C57BL6NJ_P0039727 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039728.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48179163 48189563 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039729.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48179170 48238677 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039730.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48179180 48240580 + MGP_C57BL6NJ_P0039730 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039731.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48180397 48239470 + MGP_C57BL6NJ_P0039731 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039732.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48183022 48210745 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039733.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48187621 48188203 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039734.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48189785 48216476 + MGP_C57BL6NJ_P0039734 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039735.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48212414 48225282 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039736.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48212459 48240579 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039737.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48221241 48225184 + MGP_C57BL6NJ_P0039737 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039738.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48221301 48226371 + MGP_C57BL6NJ_P0039738 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039739.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48222877 48225374 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039740.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48225395 48239548 + MGP_C57BL6NJ_P0039740 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039741.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48225484 48226591 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039742.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48226317 48239392 + MGP_C57BL6NJ_P0039742 Rpgrip1 protein_coding protein_coding MGP_C57BL6NJ_T0039743.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48230146 48234395 + Rpgrip1 protein_coding retained_intron MGP_C57BL6NJ_T0039744.1 MGP_C57BL6NJ_G0021691.1 mouse_genomes_project 14 48237702 48242787 + MGP_C57BL6NJ_P0039744 Rpgrip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002683.1 MGP_C57BL6NJ_G0002563.1 mouse_genomes_project 14 50591039 50591099 + MGP_C57BL6NJ_P0002683 Traj22 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040381.1 MGP_C57BL6NJ_G0021902.1 mouse_genomes_project 14 64313663 64385720 - MGP_C57BL6NJ_P0040381 Dpysl2 protein_coding protein_coding MGP_C57BL6NJ_T0099917.1 MGP_C57BL6NJ_G0037963.1 mouse_genomes_project 14 46486641 46486748 + Gm24316 snRNA snRNA MGP_C57BL6NJ_T0099930.1 MGP_C57BL6NJ_G0037976.1 mouse_genomes_project 14 73589827 73589934 - Gm23622 snRNA snRNA MGP_C57BL6NJ_T0013293.1 MGP_C57BL6NJ_G0011338.1 mouse_genomes_project 14 13635746 13635870 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040088.1 MGP_C57BL6NJ_G0021777.1 mouse_genomes_project 14 52444289 52456745 + MGP_C57BL6NJ_P0040088 Khnyn protein_coding protein_coding MGP_C57BL6NJ_T0040291.1 MGP_C57BL6NJ_G0021867.1 mouse_genomes_project 14 60801040 60824434 - MGP_C57BL6NJ_P0040291 Mtmr9 protein_coding protein_coding MGP_C57BL6NJ_T0039419.1 MGP_C57BL6NJ_G0021582.1 mouse_genomes_project 14 36182860 36191446 + MGP_C57BL6NJ_P0039419 Mbl1 protein_coding protein_coding MGP_C57BL6NJ_T0039165.1 MGP_C57BL6NJ_G0021503.1 mouse_genomes_project 14 25274433 25281579 + MGP_C57BL6NJ_P0039165 Nt5dc2 protein_coding protein_coding MGP_C57BL6NJ_T0039144.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146288 25255916 + MGP_C57BL6NJ_P0039144 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039145.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146288 25258601 + MGP_C57BL6NJ_P0039145 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039146.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146299 25155415 + MGP_C57BL6NJ_P0039146 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039147.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146307 25215531 + MGP_C57BL6NJ_P0039147 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039148.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146320 25255982 + MGP_C57BL6NJ_P0039148 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039149.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146327 25155383 + MGP_C57BL6NJ_P0039149 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039150.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146349 25159941 + Pbrm1 protein_coding processed_transcript MGP_C57BL6NJ_T0039151.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25146358 25256134 + MGP_C57BL6NJ_P0039151 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039152.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153391 25250960 + MGP_C57BL6NJ_P0039152 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039153.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153391 25255981 + MGP_C57BL6NJ_P0039153 Pbrm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039154.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153394 25257035 + MGP_C57BL6NJ_P0039154 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039155.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153394 25255982 + MGP_C57BL6NJ_P0039155 Pbrm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039156.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153394 25255963 + MGP_C57BL6NJ_P0039156 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039157.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153394 25255962 + MGP_C57BL6NJ_P0039157 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039158.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25153395 25257048 + MGP_C57BL6NJ_P0039158 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039159.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25155362 25217977 + MGP_C57BL6NJ_P0039159 Pbrm1 protein_coding protein_coding MGP_C57BL6NJ_T0039160.1 MGP_C57BL6NJ_G0021501.1 mouse_genomes_project 14 25217136 25220973 + Pbrm1 protein_coding retained_intron MGP_C57BL6NJ_T0040164.1 MGP_C57BL6NJ_G0021815.1 mouse_genomes_project 14 54577102 54599139 - MGP_C57BL6NJ_P0040164 Ska3 protein_coding protein_coding MGP_C57BL6NJ_T0039901.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51343686 51350895 + MGP_C57BL6NJ_P0039901 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039902.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51343874 51352641 + MGP_C57BL6NJ_P0039902 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039903.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51345334 51351881 + MGP_C57BL6NJ_P0039903 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039904.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51345334 51351868 + MGP_C57BL6NJ_P0039904 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039905.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51345341 51351808 + MGP_C57BL6NJ_P0039905 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039906.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51345342 51351768 + MGP_C57BL6NJ_P0039906 Pabpn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039907.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51348329 51351846 + MGP_C57BL6NJ_P0039907 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0039908.1 MGP_C57BL6NJ_G0021730.1 mouse_genomes_project 14 51348544 51349602 + MGP_C57BL6NJ_P0039908 Pabpn1 protein_coding protein_coding MGP_C57BL6NJ_T0002718.1 MGP_C57BL6NJ_G0002596.1 mouse_genomes_project 14 50554918 50554981 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0039009.1 MGP_C57BL6NJ_G0021464.1 mouse_genomes_project 14 19953231 19984797 + MGP_C57BL6NJ_P0039009 protein_coding protein_coding MGP_C57BL6NJ_T0039012.1 MGP_C57BL6NJ_G0021464.1 mouse_genomes_project 14 19953880 19985535 + protein_coding processed_transcript MGP_C57BL6NJ_T0039013.1 MGP_C57BL6NJ_G0021464.1 mouse_genomes_project 14 19981209 19991950 + MGP_C57BL6NJ_P0039013 protein_coding protein_coding MGP_C57BL6NJ_T0099341.1 MGP_C57BL6NJ_G0037401.1 mouse_genomes_project 14 17716845 17722039 - Gm17105 sense_intronic sense_intronic MGP_C57BL6NJ_T0039667.1 MGP_C57BL6NJ_G0021679.1 mouse_genomes_project 14 47705281 47708849 - MGP_C57BL6NJ_P0039667 Gm5800 protein_coding protein_coding MGP_C57BL6NJ_T0002801.1 MGP_C57BL6NJ_G0002667.1 mouse_genomes_project 14 50240027 50240796 + MGP_C57BL6NJ_P0002801 Trav21-dv12 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040094.1 MGP_C57BL6NJ_G0021783.1 mouse_genomes_project 14 52662301 52664897 - MGP_C57BL6NJ_P0040094 Mcpt4 protein_coding protein_coding MGP_C57BL6NJ_T0006905.1 MGP_C57BL6NJ_G0005702.1 mouse_genomes_project 14 121985568 121987908 + 1700006F04Rik lincRNA lincRNA MGP_C57BL6NJ_T0001058.1 MGP_C57BL6NJ_G0000967.1 mouse_genomes_project 14 99987998 100035579 - TEC TEC MGP_C57BL6NJ_T0002871.1 MGP_C57BL6NJ_G0002725.1 mouse_genomes_project 14 50376833 50377142 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0040355.1 MGP_C57BL6NJ_G0021896.1 mouse_genomes_project 14 63585630 63603244 + MGP_C57BL6NJ_P0040355 Chrna2 protein_coding protein_coding MGP_C57BL6NJ_T0040356.1 MGP_C57BL6NJ_G0021896.1 mouse_genomes_project 14 63591524 63605025 + MGP_C57BL6NJ_P0040356 Chrna2 protein_coding protein_coding MGP_C57BL6NJ_T0101260.1 MGP_C57BL6NJ_G0039306.1 mouse_genomes_project 14 111098700 111098830 - Gm25901 snoRNA snoRNA MGP_C57BL6NJ_T0010234.1 MGP_C57BL6NJ_G0008319.1 mouse_genomes_project 14 119981224 119981329 - Mir6239 miRNA miRNA MGP_C57BL6NJ_T0039686.1 MGP_C57BL6NJ_G0021682.1 mouse_genomes_project 14 47926240 47930060 + Slc39a2 protein_coding retained_intron MGP_C57BL6NJ_T0039687.1 MGP_C57BL6NJ_G0021682.1 mouse_genomes_project 14 47927863 47930999 + MGP_C57BL6NJ_P0039687 Slc39a2 protein_coding protein_coding MGP_C57BL6NJ_T0039688.1 MGP_C57BL6NJ_G0021682.1 mouse_genomes_project 14 47927909 47930053 + MGP_C57BL6NJ_P0039688 Slc39a2 protein_coding protein_coding MGP_C57BL6NJ_T0006870.1 MGP_C57BL6NJ_G0005675.1 mouse_genomes_project 14 53322147 53325229 - Gm16973 lincRNA lincRNA MGP_C57BL6NJ_T0006871.1 MGP_C57BL6NJ_G0005675.1 mouse_genomes_project 14 53323214 53327136 - Gm16973 lincRNA lincRNA MGP_C57BL6NJ_T0002668.1 MGP_C57BL6NJ_G0002548.1 mouse_genomes_project 14 50574434 50574496 + MGP_C57BL6NJ_P0002668 Traj38 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039307.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27299860 27324811 + MGP_C57BL6NJ_P0039307 Lrrc18 protein_coding protein_coding MGP_C57BL6NJ_T0039308.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27299876 27318915 + MGP_C57BL6NJ_P0039308 Lrrc18 protein_coding protein_coding MGP_C57BL6NJ_T0039309.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27299881 27318197 + MGP_C57BL6NJ_P0039309 Lrrc18 protein_coding protein_coding MGP_C57BL6NJ_T0039310.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27299924 27318358 + MGP_C57BL6NJ_P0039310 Lrrc18 protein_coding protein_coding MGP_C57BL6NJ_T0039311.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27299936 27323674 + MGP_C57BL6NJ_P0039311 Lrrc18 protein_coding protein_coding MGP_C57BL6NJ_T0039312.1 MGP_C57BL6NJ_G0021538.1 mouse_genomes_project 14 27304823 27317978 + Lrrc18 protein_coding processed_transcript MGP_C57BL6NJ_T0006898.1 MGP_C57BL6NJ_G0005696.1 mouse_genomes_project 14 107145300 107217344 - 1700128A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006899.1 MGP_C57BL6NJ_G0005696.1 mouse_genomes_project 14 107166877 107217316 - 1700128A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0039830.1 MGP_C57BL6NJ_G0021710.1 mouse_genomes_project 14 50830406 50834449 + MGP_C57BL6NJ_P0039830 Mrpl52 protein_coding protein_coding MGP_C57BL6NJ_T0039831.1 MGP_C57BL6NJ_G0021710.1 mouse_genomes_project 14 50830425 50831281 + Mrpl52 protein_coding retained_intron MGP_C57BL6NJ_T0039832.1 MGP_C57BL6NJ_G0021710.1 mouse_genomes_project 14 50830426 50830941 + Mrpl52 protein_coding retained_intron MGP_C57BL6NJ_T0039833.1 MGP_C57BL6NJ_G0021710.1 mouse_genomes_project 14 50830543 50834467 + Mrpl52 protein_coding retained_intron MGP_C57BL6NJ_T0039834.1 MGP_C57BL6NJ_G0021710.1 mouse_genomes_project 14 50830554 50834470 + MGP_C57BL6NJ_P0039834 Mrpl52 protein_coding protein_coding MGP_C57BL6NJ_T0040077.1 MGP_C57BL6NJ_G0021772.1 mouse_genomes_project 14 52308765 52323796 - MGP_C57BL6NJ_P0040077 Adcy4 protein_coding protein_coding MGP_C57BL6NJ_T0040078.1 MGP_C57BL6NJ_G0021772.1 mouse_genomes_project 14 52308800 52323773 - MGP_C57BL6NJ_P0040078 Adcy4 protein_coding protein_coding MGP_C57BL6NJ_T0002654.1 MGP_C57BL6NJ_G0002536.1 mouse_genomes_project 14 50561481 50561544 + MGP_C57BL6NJ_P0002654 Traj50 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0099904.1 MGP_C57BL6NJ_G0037950.1 mouse_genomes_project 14 15138816 15138961 + Gm23502 snRNA snRNA MGP_C57BL6NJ_T0040311.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62167615 62311269 - MGP_C57BL6NJ_P0040311 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040312.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62170641 62178284 - Hmbox1 protein_coding processed_transcript MGP_C57BL6NJ_T0040313.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62178205 62311266 - MGP_C57BL6NJ_P0040313 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040314.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62178801 62311051 - MGP_C57BL6NJ_P0040314 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040315.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62179156 62261164 - MGP_C57BL6NJ_P0040315 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040316.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62179548 62262886 - MGP_C57BL6NJ_P0040316 Hmbox1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040317.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62181046 62311275 - MGP_C57BL6NJ_P0040317 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040318.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62181293 62311266 - MGP_C57BL6NJ_P0040318 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040319.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62181326 62311266 - MGP_C57BL6NJ_P0040319 Hmbox1 protein_coding protein_coding MGP_C57BL6NJ_T0040320.1 MGP_C57BL6NJ_G0021878.1 mouse_genomes_project 14 62241652 62311266 - Hmbox1 protein_coding retained_intron MGP_C57BL6NJ_T0039417.1 MGP_C57BL6NJ_G0021581.1 mouse_genomes_project 14 36161274 36163969 + MGP_C57BL6NJ_P0039417 Sftpa1 protein_coding protein_coding MGP_C57BL6NJ_T0039418.1 MGP_C57BL6NJ_G0021581.1 mouse_genomes_project 14 36161280 36165945 + MGP_C57BL6NJ_P0039418 Sftpa1 protein_coding protein_coding MGP_C57BL6NJ_T0013296.1 MGP_C57BL6NJ_G0011341.1 mouse_genomes_project 14 19911656 19912845 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006846.1 MGP_C57BL6NJ_G0005657.1 mouse_genomes_project 14 29206320 29212925 + A930038B10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006847.1 MGP_C57BL6NJ_G0005657.1 mouse_genomes_project 14 29207145 29219566 + A930038B10Rik lincRNA lincRNA MGP_C57BL6NJ_T0039440.1 MGP_C57BL6NJ_G0021591.1 mouse_genomes_project 14 40645380 40665115 + MGP_C57BL6NJ_P0039440 Psmc6 protein_coding protein_coding MGP_C57BL6NJ_T0102850.1 MGP_C57BL6NJ_G0040644.1 mouse_genomes_project 14 39099581 39100041 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0039202.1 MGP_C57BL6NJ_G0021506.1 mouse_genomes_project 14 25351483 25354838 + MGP_C57BL6NJ_P0039202 Tnnc1 protein_coding protein_coding MGP_C57BL6NJ_T0039203.1 MGP_C57BL6NJ_G0021506.1 mouse_genomes_project 14 25351501 25354745 + MGP_C57BL6NJ_P0039203 Tnnc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039204.1 MGP_C57BL6NJ_G0021506.1 mouse_genomes_project 14 25351503 25354107 + Tnnc1 protein_coding retained_intron MGP_C57BL6NJ_T0013283.1 MGP_C57BL6NJ_G0011328.1 mouse_genomes_project 14 6011153 6011285 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038754.1 MGP_C57BL6NJ_G0021392.1 mouse_genomes_project 14 7045265 7051462 + MGP_C57BL6NJ_P0038754 Olfr31 protein_coding protein_coding MGP_C57BL6NJ_T0038755.1 MGP_C57BL6NJ_G0021392.1 mouse_genomes_project 14 7050508 7051462 + MGP_C57BL6NJ_P0038755 Olfr31 protein_coding protein_coding MGP_C57BL6NJ_T0040647.1 MGP_C57BL6NJ_G0022000.1 mouse_genomes_project 14 77616064 77626504 - Naa16 protein_coding retained_intron MGP_C57BL6NJ_T0040648.1 MGP_C57BL6NJ_G0022000.1 mouse_genomes_project 14 77616367 77679151 - MGP_C57BL6NJ_P0040648 Naa16 protein_coding protein_coding MGP_C57BL6NJ_T0040649.1 MGP_C57BL6NJ_G0022000.1 mouse_genomes_project 14 77624283 77675475 - MGP_C57BL6NJ_P0040649 Naa16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040650.1 MGP_C57BL6NJ_G0022000.1 mouse_genomes_project 14 77652323 77679065 - MGP_C57BL6NJ_P0040650 Naa16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040651.1 MGP_C57BL6NJ_G0022000.1 mouse_genomes_project 14 77672973 77679063 - Naa16 protein_coding retained_intron MGP_C57BL6NJ_T0039336.1 MGP_C57BL6NJ_G0021545.1 mouse_genomes_project 14 28334987 28345077 + MGP_C57BL6NJ_P0039336 Rbp3 protein_coding protein_coding MGP_C57BL6NJ_T0040227.1 MGP_C57BL6NJ_G0021838.1 mouse_genomes_project 14 57851606 57974199 + MGP_C57BL6NJ_P0040227 Mipep protein_coding protein_coding MGP_C57BL6NJ_T0040262.1 MGP_C57BL6NJ_G0021855.1 mouse_genomes_project 14 60200818 60210868 - MGP_C57BL6NJ_P0040262 Defb48 protein_coding protein_coding MGP_C57BL6NJ_T0040785.1 MGP_C57BL6NJ_G0022051.1 mouse_genomes_project 14 120053268 120099941 - MGP_C57BL6NJ_P0040785 Dct protein_coding protein_coding MGP_C57BL6NJ_T0039746.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48282530 48329927 - MGP_C57BL6NJ_P0039746 Chd8 protein_coding protein_coding MGP_C57BL6NJ_T0039747.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48282530 48350064 - MGP_C57BL6NJ_P0039747 Chd8 protein_coding protein_coding MGP_C57BL6NJ_T0039748.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48282830 48330146 - MGP_C57BL6NJ_P0039748 Chd8 protein_coding protein_coding MGP_C57BL6NJ_T0039749.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48282855 48290471 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039750.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48284145 48289001 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039751.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48288098 48291928 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039752.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48290114 48292075 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039753.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48292207 48297395 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039754.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48296219 48297751 - MGP_C57BL6NJ_P0039754 Chd8 protein_coding protein_coding MGP_C57BL6NJ_T0039755.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48297171 48298608 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039756.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48299328 48300298 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039757.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48314231 48319230 - Chd8 protein_coding processed_transcript MGP_C57BL6NJ_T0039758.1 MGP_C57BL6NJ_G0021693.1 mouse_genomes_project 14 48346741 48350064 - Chd8 protein_coding retained_intron MGP_C57BL6NJ_T0039124.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25026302 25041871 - MGP_C57BL6NJ_P0039124 Itih3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039125.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25026305 25042082 - MGP_C57BL6NJ_P0039125 Itih3 protein_coding protein_coding MGP_C57BL6NJ_T0039126.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25026308 25041909 - Itih3 protein_coding retained_intron MGP_C57BL6NJ_T0039127.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25026415 25041871 - MGP_C57BL6NJ_P0039127 Itih3 protein_coding protein_coding MGP_C57BL6NJ_T0039128.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25027572 25033120 - MGP_C57BL6NJ_P0039128 Itih3 protein_coding protein_coding MGP_C57BL6NJ_T0039129.1 MGP_C57BL6NJ_G0021495.1 mouse_genomes_project 14 25029690 25031862 - Itih3 protein_coding retained_intron MGP_C57BL6NJ_T0002785.1 MGP_C57BL6NJ_G0002655.1 mouse_genomes_project 14 49951420 49951932 + MGP_C57BL6NJ_P0002785 Trav13-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002786.1 MGP_C57BL6NJ_G0002655.1 mouse_genomes_project 14 49951661 49951925 + MGP_C57BL6NJ_P0002786 Trav13-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0006854.1 MGP_C57BL6NJ_G0005664.1 mouse_genomes_project 14 41992936 41998483 - Rubie lincRNA lincRNA MGP_C57BL6NJ_T0013330.1 MGP_C57BL6NJ_G0011375.1 mouse_genomes_project 14 51263233 51263663 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006866.1 MGP_C57BL6NJ_G0005671.1 mouse_genomes_project 14 48030243 48032684 - Gm16617 lincRNA lincRNA MGP_C57BL6NJ_T0040558.1 MGP_C57BL6NJ_G0021966.1 mouse_genomes_project 14 71314425 71318621 + Sucla2 protein_coding processed_transcript MGP_C57BL6NJ_T0040559.1 MGP_C57BL6NJ_G0021966.1 mouse_genomes_project 14 71314601 71362022 + MGP_C57BL6NJ_P0040559 Sucla2 protein_coding protein_coding MGP_C57BL6NJ_T0040560.1 MGP_C57BL6NJ_G0021966.1 mouse_genomes_project 14 71332528 71333117 + Sucla2 protein_coding retained_intron MGP_C57BL6NJ_T0040561.1 MGP_C57BL6NJ_G0021966.1 mouse_genomes_project 14 71356378 71356904 + Sucla2 protein_coding retained_intron MGP_C57BL6NJ_T0040562.1 MGP_C57BL6NJ_G0021966.1 mouse_genomes_project 14 71361276 71362013 + Sucla2 protein_coding processed_transcript MGP_C57BL6NJ_T0002675.1 MGP_C57BL6NJ_G0002555.1 mouse_genomes_project 14 50583669 50583728 + MGP_C57BL6NJ_P0002675 Traj30 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0099909.1 MGP_C57BL6NJ_G0037955.1 mouse_genomes_project 14 35385552 35385659 + Gm24388 snRNA snRNA MGP_C57BL6NJ_T0038929.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15355538 16461045 + MGP_C57BL6NJ_P0038929 1700112E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0038930.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15355647 16221125 + MGP_C57BL6NJ_P0038930 1700112E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0038931.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15355674 16461045 + MGP_C57BL6NJ_P0038931 1700112E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0038932.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15355674 16099205 + MGP_C57BL6NJ_P0038932 1700112E06Rik protein_coding protein_coding MGP_C57BL6NJ_T0038933.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15659166 15954975 + 1700112E06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0038934.1 MGP_C57BL6NJ_G0021444.1 mouse_genomes_project 14 15948228 15969771 + 1700112E06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0040131.1 MGP_C57BL6NJ_G0021809.1 mouse_genomes_project 14 54167349 54261438 + MGP_C57BL6NJ_P0040131 protein_coding protein_coding MGP_C57BL6NJ_T0040132.1 MGP_C57BL6NJ_G0021809.1 mouse_genomes_project 14 54167367 54186803 + MGP_C57BL6NJ_P0040132 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040133.1 MGP_C57BL6NJ_G0021809.1 mouse_genomes_project 14 54167393 54261438 + protein_coding retained_intron MGP_C57BL6NJ_T0040134.1 MGP_C57BL6NJ_G0021809.1 mouse_genomes_project 14 54191470 54217968 + MGP_C57BL6NJ_P0040134 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040135.1 MGP_C57BL6NJ_G0021809.1 mouse_genomes_project 14 54219644 54231103 + protein_coding retained_intron MGP_C57BL6NJ_T0038846.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13756880 13808755 - MGP_C57BL6NJ_P0038846 Ppp3cb protein_coding protein_coding MGP_C57BL6NJ_T0038847.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13757384 13808729 - MGP_C57BL6NJ_P0038847 Ppp3cb protein_coding protein_coding MGP_C57BL6NJ_T0038848.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13757546 13808694 - MGP_C57BL6NJ_P0038848 Ppp3cb protein_coding protein_coding MGP_C57BL6NJ_T0038849.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13759068 13761287 - Ppp3cb protein_coding retained_intron MGP_C57BL6NJ_T0038850.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13766056 13806789 - MGP_C57BL6NJ_P0038850 Ppp3cb protein_coding protein_coding MGP_C57BL6NJ_T0038851.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13767834 13774402 - Ppp3cb protein_coding retained_intron MGP_C57BL6NJ_T0038852.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13773833 13779107 - Ppp3cb protein_coding retained_intron MGP_C57BL6NJ_T0038853.1 MGP_C57BL6NJ_G0021423.1 mouse_genomes_project 14 13778993 13782428 - Ppp3cb protein_coding retained_intron MGP_C57BL6NJ_T0039338.1 MGP_C57BL6NJ_G0021547.1 mouse_genomes_project 14 28431628 28437528 + MGP_C57BL6NJ_P0039338 Gm5460 protein_coding protein_coding MGP_C57BL6NJ_T0040590.1 MGP_C57BL6NJ_G0021974.1 mouse_genomes_project 14 73177007 73238278 + MGP_C57BL6NJ_P0040590 Zc3h13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040591.1 MGP_C57BL6NJ_G0021974.1 mouse_genomes_project 14 73177015 73238270 + MGP_C57BL6NJ_P0040591 Zc3h13 protein_coding protein_coding MGP_C57BL6NJ_T0010213.1 MGP_C57BL6NJ_G0008298.1 mouse_genomes_project 14 68005975 68006057 + Mir320 miRNA miRNA MGP_C57BL6NJ_T0040060.1 MGP_C57BL6NJ_G0021763.1 mouse_genomes_project 14 52203442 52210717 + MGP_C57BL6NJ_P0040060 Gmpr2 protein_coding protein_coding MGP_C57BL6NJ_T0039349.1 MGP_C57BL6NJ_G0021555.1 mouse_genomes_project 14 28717457 28757889 + MGP_C57BL6NJ_P0039349 Glud1 protein_coding protein_coding MGP_C57BL6NJ_T0039350.1 MGP_C57BL6NJ_G0021555.1 mouse_genomes_project 14 28739680 28745247 + Glud1 protein_coding retained_intron MGP_C57BL6NJ_T0039351.1 MGP_C57BL6NJ_G0021555.1 mouse_genomes_project 14 28743222 28749904 + Glud1 protein_coding processed_transcript MGP_C57BL6NJ_T0039352.1 MGP_C57BL6NJ_G0021555.1 mouse_genomes_project 14 28745289 28753700 + MGP_C57BL6NJ_P0039352 Glud1 protein_coding protein_coding MGP_C57BL6NJ_T0039353.1 MGP_C57BL6NJ_G0021555.1 mouse_genomes_project 14 28746395 28753490 + Glud1 protein_coding processed_transcript MGP_C57BL6NJ_T0006868.1 MGP_C57BL6NJ_G0005673.1 mouse_genomes_project 14 50750036 50752172 - 5330426L24Rik lincRNA lincRNA MGP_C57BL6NJ_T0099004.1 MGP_C57BL6NJ_G0037068.1 mouse_genomes_project 14 22972585 22972689 - Gm23999 rRNA rRNA MGP_C57BL6NJ_T0017894.1 MGP_C57BL6NJ_G0015679.1 mouse_genomes_project 14 124595271 124600563 - A330035P11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017895.1 MGP_C57BL6NJ_G0015679.1 mouse_genomes_project 14 124597985 124600584 - A330035P11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0006834.1 MGP_C57BL6NJ_G0005650.1 mouse_genomes_project 14 19051108 19057106 - Gm26772 lincRNA lincRNA MGP_C57BL6NJ_T0038935.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16712896 17250882 - MGP_C57BL6NJ_P0038935 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038936.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16712896 17250882 - MGP_C57BL6NJ_P0038936 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038937.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722164 17250882 - MGP_C57BL6NJ_P0038937 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038938.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722164 17250882 - MGP_C57BL6NJ_P0038938 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038939.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722164 17250882 - MGP_C57BL6NJ_P0038939 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038940.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722851 17458370 - MGP_C57BL6NJ_P0038940 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038941.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722865 17459024 - MGP_C57BL6NJ_P0038941 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038942.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722865 17093272 - MGP_C57BL6NJ_P0038942 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038943.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16722865 17250882 - MGP_C57BL6NJ_P0038943 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038944.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16723361 17458370 - MGP_C57BL6NJ_P0038944 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038945.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16723361 17458142 - MGP_C57BL6NJ_P0038945 Kcnma1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038946.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16723491 17458290 - MGP_C57BL6NJ_P0038946 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038947.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16732551 17250882 - MGP_C57BL6NJ_P0038947 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038948.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 16732551 17250882 - MGP_C57BL6NJ_P0038948 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0038949.1 MGP_C57BL6NJ_G0021445.1 mouse_genomes_project 14 17456820 17458463 - MGP_C57BL6NJ_P0038949 Kcnma1 protein_coding protein_coding MGP_C57BL6NJ_T0006833.1 MGP_C57BL6NJ_G0005649.1 mouse_genomes_project 14 18852076 18874807 - Gm26660 lincRNA lincRNA MGP_C57BL6NJ_T0039301.1 MGP_C57BL6NJ_G0021534.1 mouse_genomes_project 14 27080771 27114164 + MGP_C57BL6NJ_P0039301 1810011H11Rik protein_coding protein_coding MGP_C57BL6NJ_T0039362.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28952333 29018072 - MGP_C57BL6NJ_P0039362 Ldb3 protein_coding protein_coding MGP_C57BL6NJ_T0039363.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28952333 29018146 - MGP_C57BL6NJ_P0039363 Ldb3 protein_coding protein_coding MGP_C57BL6NJ_T0039364.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28952333 29018146 - MGP_C57BL6NJ_P0039364 Ldb3 protein_coding protein_coding MGP_C57BL6NJ_T0039365.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28952333 29018146 - MGP_C57BL6NJ_P0039365 Ldb3 protein_coding protein_coding MGP_C57BL6NJ_T0039366.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28955094 29007814 - MGP_C57BL6NJ_P0039366 Ldb3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039367.1 MGP_C57BL6NJ_G0021561.1 mouse_genomes_project 14 28989735 29018146 - MGP_C57BL6NJ_P0039367 Ldb3 protein_coding protein_coding MGP_C57BL6NJ_T0040251.1 MGP_C57BL6NJ_G0021850.1 mouse_genomes_project 14 59556701 59626544 - MGP_C57BL6NJ_P0040251 Gucy1b2 protein_coding protein_coding MGP_C57BL6NJ_T0040252.1 MGP_C57BL6NJ_G0021850.1 mouse_genomes_project 14 59556816 59626541 - MGP_C57BL6NJ_P0040252 Gucy1b2 protein_coding protein_coding MGP_C57BL6NJ_T0040253.1 MGP_C57BL6NJ_G0021850.1 mouse_genomes_project 14 59584458 59625048 - MGP_C57BL6NJ_P0040253 Gucy1b2 protein_coding protein_coding MGP_C57BL6NJ_T0002720.1 MGP_C57BL6NJ_G0002598.1 mouse_genomes_project 14 50560130 50560173 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0039333.1 MGP_C57BL6NJ_G0021542.1 mouse_genomes_project 14 27950586 28010306 + MGP_C57BL6NJ_P0039333 Ptpn20 protein_coding protein_coding MGP_C57BL6NJ_T0039898.1 MGP_C57BL6NJ_G0021729.1 mouse_genomes_project 14 51330336 51351849 + MGP_C57BL6NJ_P0039898 Gm20521 protein_coding protein_coding MGP_C57BL6NJ_T0006887.1 MGP_C57BL6NJ_G0005687.1 mouse_genomes_project 14 67022531 67031612 - Gm27174 lincRNA lincRNA MGP_C57BL6NJ_T0003719.1 MGP_C57BL6NJ_G0003365.1 mouse_genomes_project 14 60889982 60894819 - Gm15918 antisense antisense MGP_C57BL6NJ_T0039394.1 MGP_C57BL6NJ_G0021572.1 mouse_genomes_project 14 31699593 31711385 - 2610528A11Rik protein_coding processed_transcript MGP_C57BL6NJ_T0039395.1 MGP_C57BL6NJ_G0021572.1 mouse_genomes_project 14 31699595 31707464 - MGP_C57BL6NJ_P0039395 2610528A11Rik protein_coding protein_coding MGP_C57BL6NJ_T0039653.1 MGP_C57BL6NJ_G0021670.1 mouse_genomes_project 14 46991278 46992037 + MGP_C57BL6NJ_P0039653 Rnase2b protein_coding protein_coding MGP_C57BL6NJ_T0039483.1 MGP_C57BL6NJ_G0021603.1 mouse_genomes_project 14 42617272 42656156 - MGP_C57BL6NJ_P0039483 Gch1 protein_coding protein_coding MGP_C57BL6NJ_T0099933.1 MGP_C57BL6NJ_G0037979.1 mouse_genomes_project 14 85351619 85351759 + Gm25115 snRNA snRNA MGP_C57BL6NJ_T0038865.1 MGP_C57BL6NJ_G0021428.1 mouse_genomes_project 14 13962784 13968013 + MGP_C57BL6NJ_P0038865 Fut11 protein_coding protein_coding MGP_C57BL6NJ_T0038983.1 MGP_C57BL6NJ_G0021454.1 mouse_genomes_project 14 19833032 19855359 - MGP_C57BL6NJ_P0038983 protein_coding protein_coding MGP_C57BL6NJ_T0038990.1 MGP_C57BL6NJ_G0021454.1 mouse_genomes_project 14 19834408 19855322 - MGP_C57BL6NJ_P0038990 protein_coding protein_coding MGP_C57BL6NJ_T0040716.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102124252 102344716 + MGP_C57BL6NJ_P0040716 Lmo7 protein_coding protein_coding MGP_C57BL6NJ_T0040717.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102228377 102289674 + Lmo7 protein_coding processed_transcript MGP_C57BL6NJ_T0040718.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102238004 102344711 + MGP_C57BL6NJ_P0040718 Lmo7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040719.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102239789 102293257 + Lmo7 protein_coding processed_transcript MGP_C57BL6NJ_T0040720.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102239999 102294676 + Lmo7 protein_coding retained_intron MGP_C57BL6NJ_T0040721.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102239999 102307447 + MGP_C57BL6NJ_P0040721 Lmo7 protein_coding protein_coding MGP_C57BL6NJ_T0040722.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102240311 102321534 + Lmo7 protein_coding retained_intron MGP_C57BL6NJ_T0040723.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102276795 102293060 + Lmo7 protein_coding processed_transcript MGP_C57BL6NJ_T0040724.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102284125 102344548 + MGP_C57BL6NJ_P0040724 Lmo7 protein_coding protein_coding MGP_C57BL6NJ_T0040725.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102289683 102344217 + MGP_C57BL6NJ_P0040725 Lmo7 protein_coding protein_coding MGP_C57BL6NJ_T0040726.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102292929 102308963 + Lmo7 protein_coding retained_intron MGP_C57BL6NJ_T0040727.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102292961 102297043 + Lmo7 protein_coding retained_intron MGP_C57BL6NJ_T0040728.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102329357 102340782 + Lmo7 protein_coding retained_intron MGP_C57BL6NJ_T0040729.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102336324 102343159 + Lmo7 protein_coding processed_transcript MGP_C57BL6NJ_T0040730.1 MGP_C57BL6NJ_G0022029.1 mouse_genomes_project 14 102339282 102342888 + Lmo7 protein_coding processed_transcript MGP_C57BL6NJ_T0040449.1 MGP_C57BL6NJ_G0021931.1 mouse_genomes_project 14 67343771 67595969 + MGP_C57BL6NJ_P0040449 Pebp4 protein_coding protein_coding MGP_C57BL6NJ_T0039811.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50657582 50667554 + MGP_C57BL6NJ_P0039811 Abhd4 protein_coding protein_coding MGP_C57BL6NJ_T0039812.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50657623 50661512 + Abhd4 protein_coding retained_intron MGP_C57BL6NJ_T0039813.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50657629 50661671 + MGP_C57BL6NJ_P0039813 Abhd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039814.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50657633 50667559 + MGP_C57BL6NJ_P0039814 Abhd4 protein_coding protein_coding MGP_C57BL6NJ_T0039815.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50657657 50661674 + MGP_C57BL6NJ_P0039815 Abhd4 protein_coding protein_coding MGP_C57BL6NJ_T0039816.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50661326 50668927 + MGP_C57BL6NJ_P0039816 Abhd4 protein_coding protein_coding MGP_C57BL6NJ_T0039817.1 MGP_C57BL6NJ_G0021706.1 mouse_genomes_project 14 50661631 50666244 + MGP_C57BL6NJ_P0039817 Abhd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039655.1 MGP_C57BL6NJ_G0021672.1 mouse_genomes_project 14 47046147 47046615 + MGP_C57BL6NJ_P0039655 Ear14 protein_coding protein_coding MGP_C57BL6NJ_T0038768.1 MGP_C57BL6NJ_G0021398.1 mouse_genomes_project 14 9114121 9125274 - MGP_C57BL6NJ_P0038768 Oxsm protein_coding protein_coding MGP_C57BL6NJ_T0038769.1 MGP_C57BL6NJ_G0021398.1 mouse_genomes_project 14 9115380 9118797 - MGP_C57BL6NJ_P0038769 Oxsm protein_coding protein_coding MGP_C57BL6NJ_T0038770.1 MGP_C57BL6NJ_G0021398.1 mouse_genomes_project 14 9116099 9124642 - MGP_C57BL6NJ_P0038770 Oxsm protein_coding protein_coding MGP_C57BL6NJ_T0038771.1 MGP_C57BL6NJ_G0021398.1 mouse_genomes_project 14 9117638 9124640 - MGP_C57BL6NJ_P0038771 Oxsm protein_coding protein_coding MGP_C57BL6NJ_T0101261.1 MGP_C57BL6NJ_G0039307.1 mouse_genomes_project 14 120380180 120380308 + Gm23669 snoRNA snoRNA MGP_C57BL6NJ_T0040597.1 MGP_C57BL6NJ_G0021977.1 mouse_genomes_project 14 73580587 73605505 + MGP_C57BL6NJ_P0040597 Erich6b protein_coding protein_coding MGP_C57BL6NJ_T0099908.1 MGP_C57BL6NJ_G0037954.1 mouse_genomes_project 14 34940321 34940485 + Gm25012 snRNA snRNA MGP_C57BL6NJ_T0013304.1 MGP_C57BL6NJ_G0011349.1 mouse_genomes_project 14 27193572 27194583 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013314.1 MGP_C57BL6NJ_G0011359.1 mouse_genomes_project 14 41419926 41421283 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040304.1 MGP_C57BL6NJ_G0021874.1 mouse_genomes_project 14 61389538 61400923 + MGP_C57BL6NJ_P0040304 Prss51 protein_coding protein_coding MGP_C57BL6NJ_T0040305.1 MGP_C57BL6NJ_G0021874.1 mouse_genomes_project 14 61396951 61400919 + MGP_C57BL6NJ_P0040305 Prss51 protein_coding protein_coding MGP_C57BL6NJ_T0040306.1 MGP_C57BL6NJ_G0021874.1 mouse_genomes_project 14 61396981 61400362 + MGP_C57BL6NJ_P0040306 Prss51 protein_coding protein_coding MGP_C57BL6NJ_T0003670.1 MGP_C57BL6NJ_G0003329.1 mouse_genomes_project 14 13806427 13827187 + 1810062O18Rik antisense antisense MGP_C57BL6NJ_T0003671.1 MGP_C57BL6NJ_G0003329.1 mouse_genomes_project 14 13806462 13832725 + 1810062O18Rik antisense antisense MGP_C57BL6NJ_T0003672.1 MGP_C57BL6NJ_G0003329.1 mouse_genomes_project 14 13806605 13827155 + 1810062O18Rik antisense antisense MGP_C57BL6NJ_T0003673.1 MGP_C57BL6NJ_G0003329.1 mouse_genomes_project 14 13806641 13832862 + 1810062O18Rik antisense antisense MGP_C57BL6NJ_T0003674.1 MGP_C57BL6NJ_G0003329.1 mouse_genomes_project 14 13827192 13832869 + 1810062O18Rik antisense antisense MGP_C57BL6NJ_T0040230.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58218656 58325915 + MGP_C57BL6NJ_P0040230 protein_coding protein_coding MGP_C57BL6NJ_T0040231.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58218690 58284881 + MGP_C57BL6NJ_P0040231 protein_coding protein_coding MGP_C57BL6NJ_T0040232.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58228238 58300712 + MGP_C57BL6NJ_P0040232 protein_coding protein_coding MGP_C57BL6NJ_T0040233.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58258213 58280878 + MGP_C57BL6NJ_P0040233 protein_coding protein_coding MGP_C57BL6NJ_T0040234.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58258428 58300717 + MGP_C57BL6NJ_P0040234 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040235.1 MGP_C57BL6NJ_G0021840.1 mouse_genomes_project 14 58274030 58290135 + protein_coding retained_intron MGP_C57BL6NJ_T0040239.1 MGP_C57BL6NJ_G0021842.1 mouse_genomes_project 14 58402003 58404187 + MGP_C57BL6NJ_P0040239 Arl11 protein_coding protein_coding MGP_C57BL6NJ_T0006820.1 MGP_C57BL6NJ_G0005641.1 mouse_genomes_project 14 5771796 5941119 - lincRNA lincRNA MGP_C57BL6NJ_T0006821.1 MGP_C57BL6NJ_G0005641.1 mouse_genomes_project 14 5772982 5796426 - lincRNA lincRNA MGP_C57BL6NJ_T0006822.1 MGP_C57BL6NJ_G0005641.1 mouse_genomes_project 14 5920272 5941111 - lincRNA lincRNA MGP_C57BL6NJ_T0039370.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29113752 29194025 + MGP_C57BL6NJ_P0039370 Wapl protein_coding protein_coding MGP_C57BL6NJ_T0039371.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29113788 29191899 + MGP_C57BL6NJ_P0039371 Wapl protein_coding protein_coding MGP_C57BL6NJ_T0039372.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29113946 29191994 + MGP_C57BL6NJ_P0039372 Wapl protein_coding protein_coding MGP_C57BL6NJ_T0039373.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29134820 29192259 + Wapl protein_coding processed_transcript MGP_C57BL6NJ_T0039374.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29170018 29192261 + MGP_C57BL6NJ_P0039374 Wapl protein_coding protein_coding MGP_C57BL6NJ_T0039375.1 MGP_C57BL6NJ_G0021563.1 mouse_genomes_project 14 29182851 29187141 + MGP_C57BL6NJ_P0039375 Wapl protein_coding protein_coding MGP_C57BL6NJ_T0039390.1 MGP_C57BL6NJ_G0021568.1 mouse_genomes_project 14 31635623 31646840 - MGP_C57BL6NJ_P0039390 Rgr protein_coding protein_coding MGP_C57BL6NJ_T0003715.1 MGP_C57BL6NJ_G0003363.1 mouse_genomes_project 14 58385398 58397585 - 1700109G14Rik antisense antisense MGP_C57BL6NJ_T0003716.1 MGP_C57BL6NJ_G0003363.1 mouse_genomes_project 14 58387088 58410397 - 1700109G14Rik antisense antisense MGP_C57BL6NJ_T0003717.1 MGP_C57BL6NJ_G0003363.1 mouse_genomes_project 14 58397075 58397559 - 1700109G14Rik antisense antisense MGP_C57BL6NJ_T0003698.1 MGP_C57BL6NJ_G0003350.1 mouse_genomes_project 14 50284713 50323198 - Gm43647 antisense antisense MGP_C57BL6NJ_T0002795.1 MGP_C57BL6NJ_G0002663.1 mouse_genomes_project 14 50153091 50153698 + MGP_C57BL6NJ_P0002795 B230359F08Rik TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039361.1 MGP_C57BL6NJ_G0021560.1 mouse_genomes_project 14 28937260 28948436 - MGP_C57BL6NJ_P0039361 9230112D13Rik protein_coding protein_coding MGP_C57BL6NJ_T0038697.1 MGP_C57BL6NJ_G0021372.1 mouse_genomes_project 14 444873 513011 + MGP_C57BL6NJ_P0038697 Pxk protein_coding protein_coding MGP_C57BL6NJ_T0038698.1 MGP_C57BL6NJ_G0021372.1 mouse_genomes_project 14 444873 513011 + MGP_C57BL6NJ_P0038698 Pxk protein_coding protein_coding MGP_C57BL6NJ_T0040503.1 MGP_C57BL6NJ_G0021952.1 mouse_genomes_project 14 68220847 68226630 - MGP_C57BL6NJ_P0040503 Npm2 protein_coding protein_coding MGP_C57BL6NJ_T0039033.1 MGP_C57BL6NJ_G0021467.1 mouse_genomes_project 14 20377497 20430285 + MGP_C57BL6NJ_P0039033 Dennd6a protein_coding protein_coding MGP_C57BL6NJ_T0039034.1 MGP_C57BL6NJ_G0021467.1 mouse_genomes_project 14 20377514 20436195 + MGP_C57BL6NJ_P0039034 Dennd6a protein_coding protein_coding MGP_C57BL6NJ_T0099947.1 MGP_C57BL6NJ_G0037993.1 mouse_genomes_project 14 111713970 111714077 - Gm23242 snRNA snRNA MGP_C57BL6NJ_T0039055.1 MGP_C57BL6NJ_G0021473.1 mouse_genomes_project 14 20824290 20826258 + MGP_C57BL6NJ_P0039055 Hesx1 protein_coding protein_coding MGP_C57BL6NJ_T0002808.1 MGP_C57BL6NJ_G0002672.1 mouse_genomes_project 14 50456632 50457243 + MGP_C57BL6NJ_P0002808 Trdv4 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040308.1 MGP_C57BL6NJ_G0021876.1 mouse_genomes_project 14 61425480 61781060 - MGP_C57BL6NJ_P0040308 Msra protein_coding protein_coding MGP_C57BL6NJ_T0002670.1 MGP_C57BL6NJ_G0002550.1 mouse_genomes_project 14 50577634 50577699 + MGP_C57BL6NJ_P0002670 Traj35 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039344.1 MGP_C57BL6NJ_G0021552.1 mouse_genomes_project 14 28592782 28599975 - MGP_C57BL6NJ_P0039344 Gprin2 protein_coding protein_coding MGP_C57BL6NJ_T0013359.1 MGP_C57BL6NJ_G0011404.1 mouse_genomes_project 14 105974022 105974575 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099344.1 MGP_C57BL6NJ_G0037404.1 mouse_genomes_project 14 123633431 123638693 + B930095G15Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0040678.1 MGP_C57BL6NJ_G0022013.1 mouse_genomes_project 14 87503784 87510435 - MGP_C57BL6NJ_P0040678 Pcdh20 protein_coding protein_coding MGP_C57BL6NJ_T0040679.1 MGP_C57BL6NJ_G0022013.1 mouse_genomes_project 14 87505898 87510385 - MGP_C57BL6NJ_P0040679 Pcdh20 protein_coding protein_coding MGP_C57BL6NJ_T0003723.1 MGP_C57BL6NJ_G0003369.1 mouse_genomes_project 14 66842054 66856264 - antisense antisense MGP_C57BL6NJ_T0013329.1 MGP_C57BL6NJ_G0011374.1 mouse_genomes_project 14 50728496 50729179 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040458.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67704892 67708370 - MGP_C57BL6NJ_P0040458 Pdlim2 protein_coding protein_coding MGP_C57BL6NJ_T0040459.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67705128 67708504 - MGP_C57BL6NJ_P0040459 Pdlim2 protein_coding protein_coding MGP_C57BL6NJ_T0040460.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67705146 67719262 - MGP_C57BL6NJ_P0040460 Pdlim2 protein_coding protein_coding MGP_C57BL6NJ_T0040461.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67708294 67716926 - MGP_C57BL6NJ_P0040461 Pdlim2 protein_coding protein_coding MGP_C57BL6NJ_T0040462.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67708320 67718312 - Pdlim2 protein_coding retained_intron MGP_C57BL6NJ_T0040463.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67709904 67716919 - Pdlim2 protein_coding retained_intron MGP_C57BL6NJ_T0040464.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67711925 67716913 - Pdlim2 protein_coding retained_intron MGP_C57BL6NJ_T0040465.1 MGP_C57BL6NJ_G0021936.1 mouse_genomes_project 14 67712003 67712478 - Pdlim2 protein_coding retained_intron MGP_C57BL6NJ_T0038752.1 MGP_C57BL6NJ_G0021391.1 mouse_genomes_project 14 6886075 6887098 - MGP_C57BL6NJ_P0038752 Olfr720 protein_coding protein_coding MGP_C57BL6NJ_T0038753.1 MGP_C57BL6NJ_G0021391.1 mouse_genomes_project 14 6886677 6901975 - MGP_C57BL6NJ_P0038753 Olfr720 protein_coding protein_coding MGP_C57BL6NJ_T0013339.1 MGP_C57BL6NJ_G0011384.1 mouse_genomes_project 14 57178411 57178616 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040111.1 MGP_C57BL6NJ_G0021798.1 mouse_genomes_project 14 53290921 53323298 + MGP_C57BL6NJ_P0040111 Mphosph8 protein_coding protein_coding MGP_C57BL6NJ_T0040112.1 MGP_C57BL6NJ_G0021798.1 mouse_genomes_project 14 53298099 53299845 + Mphosph8 protein_coding processed_transcript MGP_C57BL6NJ_T0040113.1 MGP_C57BL6NJ_G0021798.1 mouse_genomes_project 14 53314248 53317117 + Mphosph8 protein_coding processed_transcript MGP_C57BL6NJ_T0040114.1 MGP_C57BL6NJ_G0021798.1 mouse_genomes_project 14 53319005 53323295 + Mphosph8 protein_coding processed_transcript MGP_C57BL6NJ_T0040115.1 MGP_C57BL6NJ_G0021798.1 mouse_genomes_project 14 53319291 53323296 + Mphosph8 protein_coding processed_transcript MGP_C57BL6NJ_T0101219.1 MGP_C57BL6NJ_G0039265.1 mouse_genomes_project 14 32049701 32049832 - Gm23909 snoRNA snoRNA MGP_C57BL6NJ_T0101250.1 MGP_C57BL6NJ_G0039296.1 mouse_genomes_project 14 98347215 98347296 - Gm26006 snoRNA snoRNA MGP_C57BL6NJ_T0013365.1 MGP_C57BL6NJ_G0011410.1 mouse_genomes_project 14 126304544 126304758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038866.1 MGP_C57BL6NJ_G0021429.1 mouse_genomes_project 14 13970842 13972266 + MGP_C57BL6NJ_P0038866 Chchd1 protein_coding protein_coding MGP_C57BL6NJ_T0040797.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121129194 121155678 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040798.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121129194 121257817 - MGP_C57BL6NJ_P0040798 Uggt2 protein_coding protein_coding MGP_C57BL6NJ_T0040799.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121130348 121155438 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040800.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121130573 121154930 - Uggt2 protein_coding processed_transcript MGP_C57BL6NJ_T0040801.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121130970 121155612 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040802.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121144718 121157274 - Uggt2 protein_coding processed_transcript MGP_C57BL6NJ_T0040803.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121148327 121156382 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040804.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121148493 121155769 - Uggt2 protein_coding processed_transcript MGP_C57BL6NJ_T0040805.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121149438 121168078 - MGP_C57BL6NJ_P0040805 Uggt2 protein_coding protein_coding MGP_C57BL6NJ_T0040806.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121162621 121212121 - MGP_C57BL6NJ_P0040806 Uggt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040807.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121162621 121186036 - MGP_C57BL6NJ_P0040807 Uggt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040808.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121186163 121189842 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040809.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121198032 121203582 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0040810.1 MGP_C57BL6NJ_G0022060.1 mouse_genomes_project 14 121213117 121257817 - Uggt2 protein_coding retained_intron MGP_C57BL6NJ_T0003707.1 MGP_C57BL6NJ_G0003357.1 mouse_genomes_project 14 51562652 51565436 + Zfhx2os antisense antisense MGP_C57BL6NJ_T0040556.1 MGP_C57BL6NJ_G0021964.1 mouse_genomes_project 14 71262204 71272409 + MGP_C57BL6NJ_P0040556 Med4 protein_coding protein_coding MGP_C57BL6NJ_T0039179.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25314207 25349973 - MGP_C57BL6NJ_P0039179 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039180.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25314207 25334705 - MGP_C57BL6NJ_P0039180 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039181.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25314535 25330382 - MGP_C57BL6NJ_P0039181 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039182.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25314643 25317560 - MGP_C57BL6NJ_P0039182 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039183.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25315291 25317006 - MGP_C57BL6NJ_P0039183 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039184.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25317704 25319848 - MGP_C57BL6NJ_P0039184 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039185.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25320155 25346562 - MGP_C57BL6NJ_P0039185 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039186.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25320465 25324645 - MGP_C57BL6NJ_P0039186 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039187.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25320651 25328497 - MGP_C57BL6NJ_P0039187 Nisch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039188.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25320760 25335794 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039189.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25320958 25328817 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039190.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25324024 25326004 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039191.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25326487 25349998 - MGP_C57BL6NJ_P0039191 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039192.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25326687 25328124 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039193.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25328185 25334672 - MGP_C57BL6NJ_P0039193 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039194.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25328864 25349872 - MGP_C57BL6NJ_P0039194 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039195.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25328900 25349872 - MGP_C57BL6NJ_P0039195 Nisch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039196.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25329538 25330627 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039197.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25330287 25346483 - MGP_C57BL6NJ_P0039197 Nisch protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039198.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25331514 25334264 - Nisch protein_coding retained_intron MGP_C57BL6NJ_T0039199.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25344115 25349872 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0039200.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25345037 25349873 - MGP_C57BL6NJ_P0039200 Nisch protein_coding protein_coding MGP_C57BL6NJ_T0039201.1 MGP_C57BL6NJ_G0021505.1 mouse_genomes_project 14 25346477 25360049 - Nisch protein_coding processed_transcript MGP_C57BL6NJ_T0002753.1 MGP_C57BL6NJ_G0002626.1 mouse_genomes_project 14 49082510 49083173 + MGP_C57BL6NJ_P0002753 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039966.1 MGP_C57BL6NJ_G0021748.1 mouse_genomes_project 14 52062668 52075759 + MGP_C57BL6NJ_P0039966 Pck2 protein_coding protein_coding MGP_C57BL6NJ_T0101254.1 MGP_C57BL6NJ_G0039300.1 mouse_genomes_project 14 102797288 102797420 - Gm22347 snoRNA snoRNA MGP_C57BL6NJ_T0013348.1 MGP_C57BL6NJ_G0011393.1 mouse_genomes_project 14 78695528 78696281 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039558.1 MGP_C57BL6NJ_G0021616.1 mouse_genomes_project 14 44724998 44747138 + MGP_C57BL6NJ_P0039558 Ap5m1 protein_coding protein_coding MGP_C57BL6NJ_T0039357.1 MGP_C57BL6NJ_G0021559.1 mouse_genomes_project 14 28826623 28924364 - MGP_C57BL6NJ_P0039357 Bmpr1a protein_coding protein_coding MGP_C57BL6NJ_T0039358.1 MGP_C57BL6NJ_G0021559.1 mouse_genomes_project 14 28830375 28879471 - MGP_C57BL6NJ_P0039358 Bmpr1a protein_coding protein_coding MGP_C57BL6NJ_T0039359.1 MGP_C57BL6NJ_G0021559.1 mouse_genomes_project 14 28851139 28927265 - MGP_C57BL6NJ_P0039359 Bmpr1a protein_coding protein_coding MGP_C57BL6NJ_T0039360.1 MGP_C57BL6NJ_G0021559.1 mouse_genomes_project 14 28861598 28924205 - MGP_C57BL6NJ_P0039360 Bmpr1a protein_coding protein_coding MGP_C57BL6NJ_T0040165.1 MGP_C57BL6NJ_G0021816.1 mouse_genomes_project 14 54599214 54601721 + MGP_C57BL6NJ_P0040165 Mrpl57 protein_coding protein_coding MGP_C57BL6NJ_T0040073.1 MGP_C57BL6NJ_G0021769.1 mouse_genomes_project 14 52290042 52294456 - MGP_C57BL6NJ_P0040073 Cideb protein_coding protein_coding MGP_C57BL6NJ_T0040074.1 MGP_C57BL6NJ_G0021769.1 mouse_genomes_project 14 52290655 52294377 - Cideb protein_coding retained_intron MGP_C57BL6NJ_T0099931.1 MGP_C57BL6NJ_G0037977.1 mouse_genomes_project 14 80910533 80910697 - Gm22891 snRNA snRNA MGP_C57BL6NJ_T0039896.1 MGP_C57BL6NJ_G0021728.1 mouse_genomes_project 14 51330272 51336726 + MGP_C57BL6NJ_P0039896 Bcl2l2 protein_coding protein_coding MGP_C57BL6NJ_T0039897.1 MGP_C57BL6NJ_G0021728.1 mouse_genomes_project 14 51330276 51330963 + Bcl2l2 protein_coding retained_intron MGP_C57BL6NJ_T0039899.1 MGP_C57BL6NJ_G0021728.1 mouse_genomes_project 14 51330351 51332447 + MGP_C57BL6NJ_P0039899 Bcl2l2 protein_coding protein_coding MGP_C57BL6NJ_T0039900.1 MGP_C57BL6NJ_G0021728.1 mouse_genomes_project 14 51330402 51336587 + MGP_C57BL6NJ_P0039900 Bcl2l2 protein_coding protein_coding MGP_C57BL6NJ_T0040013.1 MGP_C57BL6NJ_G0021755.1 mouse_genomes_project 14 52122452 52134429 + MGP_C57BL6NJ_P0040013 Rnf31 protein_coding protein_coding MGP_C57BL6NJ_T0040014.1 MGP_C57BL6NJ_G0021755.1 mouse_genomes_project 14 52122488 52128402 + MGP_C57BL6NJ_P0040014 Rnf31 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040015.1 MGP_C57BL6NJ_G0021755.1 mouse_genomes_project 14 52123019 52134400 + MGP_C57BL6NJ_P0040015 Rnf31 protein_coding protein_coding MGP_C57BL6NJ_T0040016.1 MGP_C57BL6NJ_G0021755.1 mouse_genomes_project 14 52123211 52123694 + Rnf31 protein_coding retained_intron MGP_C57BL6NJ_T0040017.1 MGP_C57BL6NJ_G0021755.1 mouse_genomes_project 14 52129120 52129686 + Rnf31 protein_coding retained_intron MGP_C57BL6NJ_T0040247.1 MGP_C57BL6NJ_G0021849.1 mouse_genomes_project 14 59451954 59514023 + MGP_C57BL6NJ_P0040247 Rnaseh2b protein_coding protein_coding MGP_C57BL6NJ_T0040248.1 MGP_C57BL6NJ_G0021849.1 mouse_genomes_project 14 59492566 59534352 + MGP_C57BL6NJ_P0040248 Rnaseh2b protein_coding protein_coding MGP_C57BL6NJ_T0040249.1 MGP_C57BL6NJ_G0021849.1 mouse_genomes_project 14 59492623 59525460 + MGP_C57BL6NJ_P0040249 Rnaseh2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040250.1 MGP_C57BL6NJ_G0021849.1 mouse_genomes_project 14 59507763 59515792 + Rnaseh2b protein_coding retained_intron MGP_C57BL6NJ_T0099902.1 MGP_C57BL6NJ_G0037948.1 mouse_genomes_project 14 13969338 13969445 + Gm25328 snRNA snRNA MGP_C57BL6NJ_T0038874.1 MGP_C57BL6NJ_G0021434.1 mouse_genomes_project 14 14210631 14313535 + MGP_C57BL6NJ_P0038874 Vcl protein_coding protein_coding MGP_C57BL6NJ_T0101256.1 MGP_C57BL6NJ_G0039302.1 mouse_genomes_project 14 105640417 105640551 + Gm24280 snoRNA snoRNA MGP_C57BL6NJ_T0040487.1 MGP_C57BL6NJ_G0021943.1 mouse_genomes_project 14 68038100 68087367 - MGP_C57BL6NJ_P0040487 Bmp1 protein_coding protein_coding MGP_C57BL6NJ_T0038748.1 MGP_C57BL6NJ_G0021390.1 mouse_genomes_project 14 6826951 6835752 - MGP_C57BL6NJ_P0038748 Psmd6 protein_coding protein_coding MGP_C57BL6NJ_T0038749.1 MGP_C57BL6NJ_G0021390.1 mouse_genomes_project 14 6828677 6831318 - Psmd6 protein_coding retained_intron MGP_C57BL6NJ_T0038750.1 MGP_C57BL6NJ_G0021390.1 mouse_genomes_project 14 6830962 6832120 - Psmd6 protein_coding retained_intron MGP_C57BL6NJ_T0038751.1 MGP_C57BL6NJ_G0021390.1 mouse_genomes_project 14 6834400 6835701 - Psmd6 protein_coding retained_intron MGP_C57BL6NJ_T0040589.1 MGP_C57BL6NJ_G0021973.1 mouse_genomes_project 14 73128974 73176194 + MGP_C57BL6NJ_P0040589 Cpb2 protein_coding protein_coding MGP_C57BL6NJ_T0099916.1 MGP_C57BL6NJ_G0037962.1 mouse_genomes_project 14 45486599 45486685 + Gm22989 snRNA snRNA MGP_C57BL6NJ_T0040688.1 MGP_C57BL6NJ_G0022015.1 mouse_genomes_project 14 95760859 95762369 + MGP_C57BL6NJ_P0040688 4921530L21Rik protein_coding protein_coding MGP_C57BL6NJ_T0040654.1 MGP_C57BL6NJ_G0022003.1 mouse_genomes_project 14 77752553 77776572 - MGP_C57BL6NJ_P0040654 Wbp4 protein_coding protein_coding MGP_C57BL6NJ_T0102841.1 MGP_C57BL6NJ_G0040635.1 mouse_genomes_project 14 19819258 19830101 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040158.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567385 54575522 + MGP_C57BL6NJ_P0040158 Sap18 protein_coding protein_coding MGP_C57BL6NJ_T0040159.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567423 54575511 + MGP_C57BL6NJ_P0040159 Sap18 protein_coding protein_coding MGP_C57BL6NJ_T0040160.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567469 54568055 + Sap18 protein_coding retained_intron MGP_C57BL6NJ_T0040161.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567631 54572689 + MGP_C57BL6NJ_P0040161 Sap18 protein_coding protein_coding MGP_C57BL6NJ_T0040162.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567837 54572869 + MGP_C57BL6NJ_P0040162 Sap18 protein_coding protein_coding MGP_C57BL6NJ_T0040163.1 MGP_C57BL6NJ_G0021814.1 mouse_genomes_project 14 54567843 54572877 + MGP_C57BL6NJ_P0040163 Sap18 protein_coding protein_coding MGP_C57BL6NJ_T0101221.1 MGP_C57BL6NJ_G0039267.1 mouse_genomes_project 14 48294156 48294266 - Snord8 snoRNA snoRNA MGP_C57BL6NJ_T0039166.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281470 25283324 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039167.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281470 25285290 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039168.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281470 25282306 - MGP_C57BL6NJ_P0039168 Stab1 protein_coding protein_coding MGP_C57BL6NJ_T0039169.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281470 25311919 - MGP_C57BL6NJ_P0039169 Stab1 protein_coding protein_coding MGP_C57BL6NJ_T0039170.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281474 25287911 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039171.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281474 25282632 - Stab1 protein_coding processed_transcript MGP_C57BL6NJ_T0039172.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25281476 25286183 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039173.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25282426 25283401 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039174.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25284090 25285650 - MGP_C57BL6NJ_P0039174 Stab1 protein_coding protein_coding MGP_C57BL6NJ_T0039175.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25284841 25285455 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039176.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25299947 25300695 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039177.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25299947 25305140 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0039178.1 MGP_C57BL6NJ_G0021504.1 mouse_genomes_project 14 25301820 25311873 - Stab1 protein_coding retained_intron MGP_C57BL6NJ_T0010178.1 MGP_C57BL6NJ_G0008263.1 mouse_genomes_project 14 11183559 11183638 + Gm44469 miRNA miRNA MGP_C57BL6NJ_T0101239.1 MGP_C57BL6NJ_G0039285.1 mouse_genomes_project 14 86347682 86347825 + Gm23278 snoRNA snoRNA MGP_C57BL6NJ_T0038725.1 MGP_C57BL6NJ_G0021380.1 mouse_genomes_project 14 3717441 3717900 + MGP_C57BL6NJ_P0038725 Rpl21-ps4 protein_coding protein_coding MGP_C57BL6NJ_T0040490.1 MGP_C57BL6NJ_G0021946.1 mouse_genomes_project 14 68114068 68117751 + MGP_C57BL6NJ_P0040490 Reep4 protein_coding protein_coding MGP_C57BL6NJ_T0001052.1 MGP_C57BL6NJ_G0000961.1 mouse_genomes_project 14 66978221 66979718 + TEC TEC MGP_C57BL6NJ_T0002692.1 MGP_C57BL6NJ_G0002572.1 mouse_genomes_project 14 50600313 50600371 + MGP_C57BL6NJ_P0002692 Traj12 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039689.1 MGP_C57BL6NJ_G0021683.1 mouse_genomes_project 14 47940023 47948199 - MGP_C57BL6NJ_P0039689 Ndrg2 protein_coding protein_coding MGP_C57BL6NJ_T0039690.1 MGP_C57BL6NJ_G0021683.1 mouse_genomes_project 14 47940023 47948199 - MGP_C57BL6NJ_P0039690 Ndrg2 protein_coding protein_coding MGP_C57BL6NJ_T0006894.1 MGP_C57BL6NJ_G0005693.1 mouse_genomes_project 14 75594883 75622224 - Gm6994 lincRNA lincRNA MGP_C57BL6NJ_T0006895.1 MGP_C57BL6NJ_G0005693.1 mouse_genomes_project 14 75595507 75616809 - Gm6994 lincRNA lincRNA MGP_C57BL6NJ_T0040489.1 MGP_C57BL6NJ_G0021945.1 mouse_genomes_project 14 68097927 68105430 + MGP_C57BL6NJ_P0040489 Lgi3 protein_coding protein_coding MGP_C57BL6NJ_T0099343.1 MGP_C57BL6NJ_G0037403.1 mouse_genomes_project 14 53364562 53366134 - C030013D06Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0002747.1 MGP_C57BL6NJ_G0002620.1 mouse_genomes_project 14 48943922 48944555 + MGP_C57BL6NJ_P0002747 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101241.1 MGP_C57BL6NJ_G0039287.1 mouse_genomes_project 14 88903727 88903859 + Gm25415 snoRNA snoRNA MGP_C57BL6NJ_T0040166.1 MGP_C57BL6NJ_G0021817.1 mouse_genomes_project 14 54605677 54668641 - MGP_C57BL6NJ_P0040166 Zdhhc20 protein_coding protein_coding MGP_C57BL6NJ_T0040167.1 MGP_C57BL6NJ_G0021817.1 mouse_genomes_project 14 54605740 54668559 - MGP_C57BL6NJ_P0040167 Zdhhc20 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002777.1 MGP_C57BL6NJ_G0002647.1 mouse_genomes_project 14 49890395 49891089 + MGP_C57BL6NJ_P0002777 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0003726.1 MGP_C57BL6NJ_G0003372.1 mouse_genomes_project 14 67045641 67049004 - Gm27221 antisense antisense MGP_C57BL6NJ_T0101222.1 MGP_C57BL6NJ_G0039268.1 mouse_genomes_project 14 48370388 48370478 + Gm23758 snoRNA snoRNA MGP_C57BL6NJ_T0010175.1 MGP_C57BL6NJ_G0008260.1 mouse_genomes_project 14 3779396 3779481 + Mir5124b miRNA miRNA MGP_C57BL6NJ_T0010206.1 MGP_C57BL6NJ_G0008291.1 mouse_genomes_project 14 61909058 61909143 + Mir124a-1 miRNA miRNA MGP_C57BL6NJ_T0102844.1 MGP_C57BL6NJ_G0040638.1 mouse_genomes_project 14 38882040 38882491 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002750.1 MGP_C57BL6NJ_G0002623.1 mouse_genomes_project 14 49016192 49016808 + MGP_C57BL6NJ_P0002750 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040075.1 MGP_C57BL6NJ_G0021770.1 mouse_genomes_project 14 52301147 52302949 + MGP_C57BL6NJ_P0040075 Ltb4r2 protein_coding protein_coding MGP_C57BL6NJ_T0040735.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103587550 103611639 - MGP_C57BL6NJ_P0040735 Fbxl3 protein_coding protein_coding MGP_C57BL6NJ_T0040736.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103590164 103608506 - MGP_C57BL6NJ_P0040736 Fbxl3 protein_coding protein_coding MGP_C57BL6NJ_T0040737.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103590814 103608482 - MGP_C57BL6NJ_P0040737 Fbxl3 protein_coding protein_coding MGP_C57BL6NJ_T0040738.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103592235 103599324 - Fbxl3 protein_coding retained_intron MGP_C57BL6NJ_T0040739.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103598920 103611651 - MGP_C57BL6NJ_P0040739 Fbxl3 protein_coding protein_coding MGP_C57BL6NJ_T0040740.1 MGP_C57BL6NJ_G0022033.1 mouse_genomes_project 14 103598958 103605255 - MGP_C57BL6NJ_P0040740 Fbxl3 protein_coding protein_coding MGP_C57BL6NJ_T0040301.1 MGP_C57BL6NJ_G0021873.1 mouse_genomes_project 14 61378775 61388756 - MGP_C57BL6NJ_P0040301 Prss55 protein_coding protein_coding MGP_C57BL6NJ_T0040302.1 MGP_C57BL6NJ_G0021873.1 mouse_genomes_project 14 61378782 61388713 - MGP_C57BL6NJ_P0040302 Prss55 protein_coding protein_coding MGP_C57BL6NJ_T0040303.1 MGP_C57BL6NJ_G0021873.1 mouse_genomes_project 14 61382683 61393422 - Prss55 protein_coding processed_transcript MGP_C57BL6NJ_T0003714.1 MGP_C57BL6NJ_G0003362.1 mouse_genomes_project 14 57843589 57851622 - Mipepos antisense antisense MGP_C57BL6NJ_T0101243.1 MGP_C57BL6NJ_G0039289.1 mouse_genomes_project 14 90471015 90471129 - Gm23225 snoRNA snoRNA MGP_C57BL6NJ_T0039911.1 MGP_C57BL6NJ_G0021733.1 mouse_genomes_project 14 51386324 51389467 + MGP_C57BL6NJ_P0039911 Il25 protein_coding protein_coding MGP_C57BL6NJ_T0039927.1 MGP_C57BL6NJ_G0021739.1 mouse_genomes_project 14 51542934 51587087 + MGP_C57BL6NJ_P0039927 Thtpa protein_coding protein_coding MGP_C57BL6NJ_T0039928.1 MGP_C57BL6NJ_G0021739.1 mouse_genomes_project 14 51544007 51587474 + Thtpa protein_coding processed_transcript MGP_C57BL6NJ_T0039929.1 MGP_C57BL6NJ_G0021739.1 mouse_genomes_project 14 51544543 51588548 + MGP_C57BL6NJ_P0039929 Thtpa protein_coding protein_coding MGP_C57BL6NJ_T0039934.1 MGP_C57BL6NJ_G0021739.1 mouse_genomes_project 14 51584345 51588548 + MGP_C57BL6NJ_P0039934 Thtpa protein_coding protein_coding MGP_C57BL6NJ_T0040276.1 MGP_C57BL6NJ_G0021862.1 mouse_genomes_project 14 60429766 60442052 - MGP_C57BL6NJ_P0040276 Neil2 protein_coding protein_coding MGP_C57BL6NJ_T0039277.1 MGP_C57BL6NJ_G0021524.1 mouse_genomes_project 14 26419978 26426966 + MGP_C57BL6NJ_P0039277 protein_coding protein_coding MGP_C57BL6NJ_T0006907.1 MGP_C57BL6NJ_G0005704.1 mouse_genomes_project 14 126580869 126605103 + 1700024B18Rik lincRNA lincRNA MGP_C57BL6NJ_T0038875.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14311303 14332794 - MGP_C57BL6NJ_P0038875 Ap3m1 protein_coding protein_coding MGP_C57BL6NJ_T0038876.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14311320 14314428 - Ap3m1 protein_coding processed_transcript MGP_C57BL6NJ_T0038877.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14311395 14314642 - Ap3m1 protein_coding processed_transcript MGP_C57BL6NJ_T0038878.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14315875 14332566 - MGP_C57BL6NJ_P0038878 Ap3m1 protein_coding protein_coding MGP_C57BL6NJ_T0038879.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14318482 14332531 - MGP_C57BL6NJ_P0038879 Ap3m1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038880.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14318526 14332807 - Ap3m1 protein_coding processed_transcript MGP_C57BL6NJ_T0038881.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14321337 14332421 - Ap3m1 protein_coding processed_transcript MGP_C57BL6NJ_T0038882.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14321364 14332852 - MGP_C57BL6NJ_P0038882 Ap3m1 protein_coding protein_coding MGP_C57BL6NJ_T0038883.1 MGP_C57BL6NJ_G0021435.1 mouse_genomes_project 14 14325003 14332464 - MGP_C57BL6NJ_P0038883 Ap3m1 protein_coding protein_coding MGP_C57BL6NJ_T0039636.1 MGP_C57BL6NJ_G0021658.1 mouse_genomes_project 14 46733236 46754788 + MGP_C57BL6NJ_P0039636 Pnp protein_coding protein_coding MGP_C57BL6NJ_T0039637.1 MGP_C57BL6NJ_G0021658.1 mouse_genomes_project 14 46733440 46753111 + MGP_C57BL6NJ_P0039637 Pnp protein_coding protein_coding MGP_C57BL6NJ_T0039638.1 MGP_C57BL6NJ_G0021658.1 mouse_genomes_project 14 46733442 46753292 + MGP_C57BL6NJ_P0039638 Pnp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040065.1 MGP_C57BL6NJ_G0021766.1 mouse_genomes_project 14 52251748 52258074 - MGP_C57BL6NJ_P0040065 Rabggta protein_coding protein_coding MGP_C57BL6NJ_T0040066.1 MGP_C57BL6NJ_G0021766.1 mouse_genomes_project 14 52251752 52258052 - MGP_C57BL6NJ_P0040066 Rabggta protein_coding protein_coding MGP_C57BL6NJ_T0040067.1 MGP_C57BL6NJ_G0021766.1 mouse_genomes_project 14 52252200 52258133 - MGP_C57BL6NJ_P0040067 Rabggta protein_coding protein_coding MGP_C57BL6NJ_T0039405.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36018697 36038858 - MGP_C57BL6NJ_P0039405 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039406.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36019495 36029582 - MGP_C57BL6NJ_P0039406 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039407.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36022697 36030028 - MGP_C57BL6NJ_P0039407 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039408.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36023877 36028153 - Fam213a protein_coding retained_intron MGP_C57BL6NJ_T0039409.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36023915 36032025 - MGP_C57BL6NJ_P0039409 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039410.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36023957 36038820 - MGP_C57BL6NJ_P0039410 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039411.1 MGP_C57BL6NJ_G0021577.1 mouse_genomes_project 14 36029089 36031969 - MGP_C57BL6NJ_P0039411 Fam213a protein_coding protein_coding MGP_C57BL6NJ_T0039083.1 MGP_C57BL6NJ_G0021487.1 mouse_genomes_project 14 24542433 24589892 + MGP_C57BL6NJ_P0039083 Dcp1a protein_coding protein_coding MGP_C57BL6NJ_T0040178.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061374 56089186 + MGP_C57BL6NJ_P0040178 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040179.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061393 56103229 + MGP_C57BL6NJ_P0040179 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040180.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061399 56101505 + MGP_C57BL6NJ_P0040180 Rcbtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040181.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061407 56103229 + MGP_C57BL6NJ_P0040181 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040182.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061641 56070137 + MGP_C57BL6NJ_P0040182 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040183.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061648 56088498 + Rcbtb1 protein_coding processed_transcript MGP_C57BL6NJ_T0040184.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56061668 56070233 + MGP_C57BL6NJ_P0040184 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040185.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56065778 56095941 + MGP_C57BL6NJ_P0040185 Rcbtb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040186.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56082404 56090695 + Rcbtb1 protein_coding processed_transcript MGP_C57BL6NJ_T0040187.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56083576 56103223 + MGP_C57BL6NJ_P0040187 Rcbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0040188.1 MGP_C57BL6NJ_G0021822.1 mouse_genomes_project 14 56088559 56090656 + Rcbtb1 protein_coding retained_intron MGP_C57BL6NJ_T0039809.1 MGP_C57BL6NJ_G0021705.1 mouse_genomes_project 14 50633939 50652468 - MGP_C57BL6NJ_P0039809 Dad1 protein_coding protein_coding MGP_C57BL6NJ_T0039810.1 MGP_C57BL6NJ_G0021705.1 mouse_genomes_project 14 50638132 50652278 - MGP_C57BL6NJ_P0039810 Dad1 protein_coding protein_coding MGP_C57BL6NJ_T0102416.1 MGP_C57BL6NJ_G0040333.1 mouse_genomes_project 14 47317881 47326616 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102417.1 MGP_C57BL6NJ_G0040333.1 mouse_genomes_project 14 47317881 47326613 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102418.1 MGP_C57BL6NJ_G0040333.1 mouse_genomes_project 14 47317913 47326090 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0040259.1 MGP_C57BL6NJ_G0021853.1 mouse_genomes_project 14 59878164 59965010 - MGP_C57BL6NJ_P0040259 Ints6 protein_coding protein_coding MGP_C57BL6NJ_T0040260.1 MGP_C57BL6NJ_G0021853.1 mouse_genomes_project 14 59896625 59964556 - MGP_C57BL6NJ_P0040260 Ints6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002684.1 MGP_C57BL6NJ_G0002564.1 mouse_genomes_project 14 50592581 50592638 + MGP_C57BL6NJ_P0002684 Traj21 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0013278.1 MGP_C57BL6NJ_G0011323.1 mouse_genomes_project 14 2287221 2287822 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039644.1 MGP_C57BL6NJ_G0021663.1 mouse_genomes_project 14 46869148 46869693 - MGP_C57BL6NJ_P0039644 Rnase12 protein_coding protein_coding MGP_C57BL6NJ_T0003702.1 MGP_C57BL6NJ_G0003353.1 mouse_genomes_project 14 51079137 51083234 + 4930579G18Rik antisense antisense MGP_C57BL6NJ_T0006861.1 MGP_C57BL6NJ_G0005668.1 mouse_genomes_project 14 46651426 46658377 + Gm26782 lincRNA lincRNA MGP_C57BL6NJ_T0006862.1 MGP_C57BL6NJ_G0005668.1 mouse_genomes_project 14 46651438 46662051 + Gm26782 lincRNA lincRNA MGP_C57BL6NJ_T0099945.1 MGP_C57BL6NJ_G0037991.1 mouse_genomes_project 14 105959752 105959860 - Gm24207 snRNA snRNA MGP_C57BL6NJ_T0040634.1 MGP_C57BL6NJ_G0021993.1 mouse_genomes_project 14 76247852 76255959 - MGP_C57BL6NJ_P0040634 Fam216b protein_coding protein_coding MGP_C57BL6NJ_T0040635.1 MGP_C57BL6NJ_G0021993.1 mouse_genomes_project 14 76248544 76255951 - MGP_C57BL6NJ_P0040635 Fam216b protein_coding protein_coding MGP_C57BL6NJ_T0040636.1 MGP_C57BL6NJ_G0021993.1 mouse_genomes_project 14 76249574 76255933 - MGP_C57BL6NJ_P0040636 Fam216b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011625.1 MGP_C57BL6NJ_G0009710.1 mouse_genomes_project 14 10848396 10848722 - Gm24140 misc_RNA misc_RNA MGP_C57BL6NJ_T0040812.1 MGP_C57BL6NJ_G0022062.1 mouse_genomes_project 14 122271489 122295296 - MGP_C57BL6NJ_P0040812 Oxgr1 protein_coding protein_coding MGP_C57BL6NJ_T0101236.1 MGP_C57BL6NJ_G0039282.1 mouse_genomes_project 14 73963286 73963420 - Gm25517 snoRNA snoRNA MGP_C57BL6NJ_T0002804.1 MGP_C57BL6NJ_G0002669.1 mouse_genomes_project 14 50313520 50314108 + MGP_C57BL6NJ_P0002804 Trdv2-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002805.1 MGP_C57BL6NJ_G0002669.1 mouse_genomes_project 14 50313520 50314108 + MGP_C57BL6NJ_P0002805 Trdv2-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040072.1 MGP_C57BL6NJ_G0021768.1 mouse_genomes_project 14 52281696 52291498 + MGP_C57BL6NJ_P0040072 Nop9 protein_coding protein_coding MGP_C57BL6NJ_T0040380.1 MGP_C57BL6NJ_G0021901.1 mouse_genomes_project 14 64291556 64302258 + MGP_C57BL6NJ_P0040380 Gm10032 protein_coding protein_coding MGP_C57BL6NJ_T0013358.1 MGP_C57BL6NJ_G0011403.1 mouse_genomes_project 14 103511547 103512020 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101227.1 MGP_C57BL6NJ_G0039273.1 mouse_genomes_project 14 55478860 55478993 - Gm25614 snoRNA snoRNA MGP_C57BL6NJ_T0040254.1 MGP_C57BL6NJ_G0021851.1 mouse_genomes_project 14 59742854 59777961 + Fam124a protein_coding processed_transcript MGP_C57BL6NJ_T0040255.1 MGP_C57BL6NJ_G0021851.1 mouse_genomes_project 14 59742854 59795461 + Fam124a protein_coding processed_transcript MGP_C57BL6NJ_T0040256.1 MGP_C57BL6NJ_G0021851.1 mouse_genomes_project 14 59742854 59797914 + MGP_C57BL6NJ_P0040256 Fam124a protein_coding protein_coding MGP_C57BL6NJ_T0040257.1 MGP_C57BL6NJ_G0021851.1 mouse_genomes_project 14 59742892 59752122 + Fam124a protein_coding processed_transcript MGP_C57BL6NJ_T0010188.1 MGP_C57BL6NJ_G0008273.1 mouse_genomes_project 14 29344710 29344808 + Mir346 miRNA miRNA MGP_C57BL6NJ_T0013298.1 MGP_C57BL6NJ_G0011343.1 mouse_genomes_project 14 19911661 19912883 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039490.1 MGP_C57BL6NJ_G0021606.1 mouse_genomes_project 14 42783846 42810423 + MGP_C57BL6NJ_P0039490 Mapk1ip1l protein_coding protein_coding MGP_C57BL6NJ_T0039491.1 MGP_C57BL6NJ_G0021606.1 mouse_genomes_project 14 42783875 42810479 + MGP_C57BL6NJ_P0039491 Mapk1ip1l protein_coding protein_coding MGP_C57BL6NJ_T0039295.1 MGP_C57BL6NJ_G0021531.1 mouse_genomes_project 14 26792884 26856416 + MGP_C57BL6NJ_P0039295 Ercc6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039650.1 MGP_C57BL6NJ_G0021667.1 mouse_genomes_project 14 46931052 46934279 + MGP_C57BL6NJ_P0039650 Eddm3b protein_coding protein_coding MGP_C57BL6NJ_T0013332.1 MGP_C57BL6NJ_G0011377.1 mouse_genomes_project 14 52587626 52592148 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040653.1 MGP_C57BL6NJ_G0022002.1 mouse_genomes_project 14 77714144 77720166 + MGP_C57BL6NJ_P0040653 Kbtbd7 protein_coding protein_coding MGP_C57BL6NJ_T0039954.1 MGP_C57BL6NJ_G0021745.1 mouse_genomes_project 14 52010974 52028125 + MGP_C57BL6NJ_P0039954 Lrrc16b protein_coding protein_coding MGP_C57BL6NJ_T0039955.1 MGP_C57BL6NJ_G0021745.1 mouse_genomes_project 14 52011125 52028150 + MGP_C57BL6NJ_P0039955 Lrrc16b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038859.1 MGP_C57BL6NJ_G0021425.1 mouse_genomes_project 14 13915034 13922470 - MGP_C57BL6NJ_P0038859 Myoz1 protein_coding protein_coding MGP_C57BL6NJ_T0040283.1 MGP_C57BL6NJ_G0021865.1 mouse_genomes_project 14 60706314 60735028 + MGP_C57BL6NJ_P0040283 Fam167a protein_coding protein_coding MGP_C57BL6NJ_T0040284.1 MGP_C57BL6NJ_G0021865.1 mouse_genomes_project 14 60706329 60711666 + Fam167a protein_coding retained_intron MGP_C57BL6NJ_T0040413.1 MGP_C57BL6NJ_G0021913.1 mouse_genomes_project 14 65690285 65699769 + MGP_C57BL6NJ_P0040413 Nefl protein_coding protein_coding MGP_C57BL6NJ_T0010222.1 MGP_C57BL6NJ_G0008307.1 mouse_genomes_project 14 103489359 103489443 - Mir5130 miRNA miRNA MGP_C57BL6NJ_T0039006.1 MGP_C57BL6NJ_G0021463.1 mouse_genomes_project 14 19952590 19990500 + MGP_C57BL6NJ_P0039006 protein_coding protein_coding MGP_C57BL6NJ_T0039010.1 MGP_C57BL6NJ_G0021463.1 mouse_genomes_project 14 19953546 19984797 + MGP_C57BL6NJ_P0039010 protein_coding protein_coding MGP_C57BL6NJ_T0039014.1 MGP_C57BL6NJ_G0021463.1 mouse_genomes_project 14 19981209 19991870 + MGP_C57BL6NJ_P0039014 protein_coding protein_coding MGP_C57BL6NJ_T0002759.1 MGP_C57BL6NJ_G0002632.1 mouse_genomes_project 14 49312685 49313154 + MGP_C57BL6NJ_P0002759 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039497.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42875668 42907031 - MGP_C57BL6NJ_P0039497 Dlgap5 protein_coding protein_coding MGP_C57BL6NJ_T0039498.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42875677 42882143 - MGP_C57BL6NJ_P0039498 Dlgap5 protein_coding protein_coding MGP_C57BL6NJ_T0039499.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42876607 42906801 - Dlgap5 protein_coding retained_intron MGP_C57BL6NJ_T0039500.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42877727 42906831 - Dlgap5 protein_coding retained_intron MGP_C57BL6NJ_T0039501.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42881738 42883851 - Dlgap5 protein_coding retained_intron MGP_C57BL6NJ_T0039502.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42886386 42900419 - MGP_C57BL6NJ_P0039502 Dlgap5 protein_coding protein_coding MGP_C57BL6NJ_T0039503.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42902214 42906824 - Dlgap5 protein_coding retained_intron MGP_C57BL6NJ_T0039504.1 MGP_C57BL6NJ_G0021608.1 mouse_genomes_project 14 42902746 42905131 - Dlgap5 protein_coding processed_transcript MGP_C57BL6NJ_T0040506.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68338401 68345819 + Dok2 protein_coding processed_transcript MGP_C57BL6NJ_T0040507.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68338414 68344385 + Dok2 protein_coding processed_transcript MGP_C57BL6NJ_T0040508.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68345518 68348259 + Dok2 protein_coding processed_transcript MGP_C57BL6NJ_T0040509.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68346550 68350742 + MGP_C57BL6NJ_P0040509 Dok2 protein_coding protein_coding MGP_C57BL6NJ_T0040510.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68348125 68349116 + Dok2 protein_coding retained_intron MGP_C57BL6NJ_T0040511.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68348424 68349799 + Dok2 protein_coding processed_transcript MGP_C57BL6NJ_T0040512.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68348609 68349808 + Dok2 protein_coding processed_transcript MGP_C57BL6NJ_T0040513.1 MGP_C57BL6NJ_G0021954.1 mouse_genomes_project 14 68348956 68349842 + Dok2 protein_coding retained_intron MGP_C57BL6NJ_T0002657.1 MGP_C57BL6NJ_G0002538.1 mouse_genomes_project 14 50563699 50563760 + MGP_C57BL6NJ_P0002657 Traj48 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002658.1 MGP_C57BL6NJ_G0002538.1 mouse_genomes_project 14 50563700 50563760 + Traj48 TR_J_gene processed_transcript MGP_C57BL6NJ_T0038817.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13102520 13216177 - MGP_C57BL6NJ_P0038817 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0038818.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13105616 13216100 - MGP_C57BL6NJ_P0038818 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0038819.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13105616 13216555 - MGP_C57BL6NJ_P0038819 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0038820.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13105657 13215987 - MGP_C57BL6NJ_P0038820 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0038821.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13105700 13216112 - MGP_C57BL6NJ_P0038821 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0038822.1 MGP_C57BL6NJ_G0021411.1 mouse_genomes_project 14 13105754 13215621 - MGP_C57BL6NJ_P0038822 Gng2 protein_coding protein_coding MGP_C57BL6NJ_T0002807.1 MGP_C57BL6NJ_G0002671.1 mouse_genomes_project 14 50353048 50353574 + MGP_C57BL6NJ_P0002807 Trav23 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0038863.1 MGP_C57BL6NJ_G0021427.1 mouse_genomes_project 14 13940926 13962667 + MGP_C57BL6NJ_P0038863 Sec24c protein_coding protein_coding MGP_C57BL6NJ_T0038864.1 MGP_C57BL6NJ_G0021427.1 mouse_genomes_project 14 13940937 13962674 + MGP_C57BL6NJ_P0038864 Sec24c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0017890.1 MGP_C57BL6NJ_G0015677.1 mouse_genomes_project 14 120311602 120314130 + Gm4675 processed_transcript processed_transcript MGP_C57BL6NJ_T0017891.1 MGP_C57BL6NJ_G0015677.1 mouse_genomes_project 14 120312250 120336369 + Gm4675 processed_transcript processed_transcript MGP_C57BL6NJ_T0017892.1 MGP_C57BL6NJ_G0015677.1 mouse_genomes_project 14 120328897 120329440 + Gm4675 processed_transcript processed_transcript MGP_C57BL6NJ_T0101224.1 MGP_C57BL6NJ_G0039270.1 mouse_genomes_project 14 52839419 52839545 + Gm24118 snoRNA snoRNA MGP_C57BL6NJ_T0040671.1 MGP_C57BL6NJ_G0022011.1 mouse_genomes_project 14 85610388 86122558 - MGP_C57BL6NJ_P0040671 Diaph3 protein_coding protein_coding MGP_C57BL6NJ_T0040672.1 MGP_C57BL6NJ_G0022011.1 mouse_genomes_project 14 85611344 86122448 - MGP_C57BL6NJ_P0040672 Diaph3 protein_coding protein_coding MGP_C57BL6NJ_T0006852.1 MGP_C57BL6NJ_G0005662.1 mouse_genomes_project 14 41852160 41871048 + Gm15221 lincRNA lincRNA MGP_C57BL6NJ_T0013354.1 MGP_C57BL6NJ_G0011399.1 mouse_genomes_project 14 99482886 99483319 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0002790.1 MGP_C57BL6NJ_G0002659.1 mouse_genomes_project 14 49992616 49993194 + MGP_C57BL6NJ_P0002790 Trav3d-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002791.1 MGP_C57BL6NJ_G0002659.1 mouse_genomes_project 14 49992914 49993190 + MGP_C57BL6NJ_P0002791 Trav3d-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040631.1 MGP_C57BL6NJ_G0021991.1 mouse_genomes_project 14 75962430 76039807 - MGP_C57BL6NJ_P0040631 Dnajc15 protein_coding protein_coding MGP_C57BL6NJ_T0003724.1 MGP_C57BL6NJ_G0003370.1 mouse_genomes_project 14 66952446 66955338 + Gm27222 antisense antisense MGP_C57BL6NJ_T0040089.1 MGP_C57BL6NJ_G0021778.1 mouse_genomes_project 14 52457249 52460196 - MGP_C57BL6NJ_P0040089 Sdr39u1 protein_coding protein_coding MGP_C57BL6NJ_T0002859.1 MGP_C57BL6NJ_G0002713.1 mouse_genomes_project 14 48943983 48944555 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0040870.1 MGP_C57BL6NJ_G0022084.1 mouse_genomes_project 14 126263364 126567189 + MGP_C57BL6NJ_P0040870 Itgbl1 protein_coding protein_coding MGP_C57BL6NJ_T0040871.1 MGP_C57BL6NJ_G0022084.1 mouse_genomes_project 14 126263518 126566627 + MGP_C57BL6NJ_P0040871 Itgbl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040872.1 MGP_C57BL6NJ_G0022084.1 mouse_genomes_project 14 126264817 126567189 + MGP_C57BL6NJ_P0040872 Itgbl1 protein_coding protein_coding MGP_C57BL6NJ_T0010179.1 MGP_C57BL6NJ_G0008264.1 mouse_genomes_project 14 13957422 13957491 + Mir6946 miRNA miRNA MGP_C57BL6NJ_T0001047.1 MGP_C57BL6NJ_G0000956.1 mouse_genomes_project 14 58804199 58806346 + TEC TEC MGP_C57BL6NJ_T0010192.1 MGP_C57BL6NJ_G0008277.1 mouse_genomes_project 14 43958658 43958724 - Gm23881 miRNA miRNA MGP_C57BL6NJ_T0101208.1 MGP_C57BL6NJ_G0039254.1 mouse_genomes_project 14 13449038 13449155 - Gm24912 snoRNA snoRNA MGP_C57BL6NJ_T0040658.1 MGP_C57BL6NJ_G0022006.1 mouse_genomes_project 14 77946258 77972018 - MGP_C57BL6NJ_P0040658 Lect1 protein_coding protein_coding MGP_C57BL6NJ_T0040659.1 MGP_C57BL6NJ_G0022006.1 mouse_genomes_project 14 77946261 77972104 - MGP_C57BL6NJ_P0040659 Lect1 protein_coding protein_coding MGP_C57BL6NJ_T0040660.1 MGP_C57BL6NJ_G0022006.1 mouse_genomes_project 14 77946384 77950764 - Lect1 protein_coding retained_intron MGP_C57BL6NJ_T0040661.1 MGP_C57BL6NJ_G0022006.1 mouse_genomes_project 14 77950045 77954079 - Lect1 protein_coding processed_transcript MGP_C57BL6NJ_T0040662.1 MGP_C57BL6NJ_G0022006.1 mouse_genomes_project 14 77950555 77954227 - Lect1 protein_coding retained_intron MGP_C57BL6NJ_T0039603.1 MGP_C57BL6NJ_G0021644.1 mouse_genomes_project 14 46393778 46394953 + MGP_C57BL6NJ_P0039603 Olfr745 protein_coding protein_coding MGP_C57BL6NJ_T0002694.1 MGP_C57BL6NJ_G0002574.1 mouse_genomes_project 14 50603153 50603211 + MGP_C57BL6NJ_P0002694 Traj9 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039574.1 MGP_C57BL6NJ_G0021622.1 mouse_genomes_project 14 45641043 45685064 - MGP_C57BL6NJ_P0039574 protein_coding protein_coding MGP_C57BL6NJ_T0039576.1 MGP_C57BL6NJ_G0021622.1 mouse_genomes_project 14 45683949 45685067 - MGP_C57BL6NJ_P0039576 protein_coding protein_coding MGP_C57BL6NJ_T0102169.1 MGP_C57BL6NJ_G0040191.1 mouse_genomes_project 14 43767403 43799474 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102170.1 MGP_C57BL6NJ_G0040191.1 mouse_genomes_project 14 43798261 43799267 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0040411.1 MGP_C57BL6NJ_G0021911.1 mouse_genomes_project 14 65334395 65524465 - MGP_C57BL6NJ_P0040411 Dock5 protein_coding protein_coding MGP_C57BL6NJ_T0040787.1 MGP_C57BL6NJ_G0022053.1 mouse_genomes_project 14 120207127 120234577 + MGP_C57BL6NJ_P0040787 Gpr180 protein_coding protein_coding MGP_C57BL6NJ_T0013319.1 MGP_C57BL6NJ_G0011364.1 mouse_genomes_project 14 48468276 48469047 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006845.1 MGP_C57BL6NJ_G0005656.1 mouse_genomes_project 14 26971881 26973750 + Gm28651 lincRNA lincRNA MGP_C57BL6NJ_T0039225.1 MGP_C57BL6NJ_G0021515.1 mouse_genomes_project 14 25686734 25743276 - MGP_C57BL6NJ_P0039225 Colq protein_coding protein_coding MGP_C57BL6NJ_T0039226.1 MGP_C57BL6NJ_G0021515.1 mouse_genomes_project 14 25686812 25722885 - MGP_C57BL6NJ_P0039226 Colq protein_coding protein_coding MGP_C57BL6NJ_T0039228.1 MGP_C57BL6NJ_G0021515.1 mouse_genomes_project 14 25717700 25758543 - MGP_C57BL6NJ_P0039228 Colq protein_coding protein_coding MGP_C57BL6NJ_T0039229.1 MGP_C57BL6NJ_G0021515.1 mouse_genomes_project 14 25744275 25758519 - Colq protein_coding processed_transcript MGP_C57BL6NJ_T0039230.1 MGP_C57BL6NJ_G0021515.1 mouse_genomes_project 14 25753972 25758508 - Colq protein_coding processed_transcript MGP_C57BL6NJ_T0040668.1 MGP_C57BL6NJ_G0022009.1 mouse_genomes_project 14 78338694 78361451 + MGP_C57BL6NJ_P0040668 Olfm4 protein_coding protein_coding MGP_C57BL6NJ_T0040669.1 MGP_C57BL6NJ_G0022009.1 mouse_genomes_project 14 78338717 78361451 + MGP_C57BL6NJ_P0040669 Olfm4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0017871.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74734796 74750336 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017872.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739399 74750259 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017873.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739412 74741664 + 1700108F19Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017874.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739412 74750275 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017875.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739440 74750262 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017876.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739443 74742222 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017877.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74739487 74742222 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017878.1 MGP_C57BL6NJ_G0015670.1 mouse_genomes_project 14 74743587 74750054 + 1700108F19Rik processed_transcript lincRNA MGP_C57BL6NJ_T0002770.1 MGP_C57BL6NJ_G0002641.1 mouse_genomes_project 14 49778345 49778902 + MGP_C57BL6NJ_P0002770 Trav11d TR_V_gene TR_V_gene MGP_C57BL6NJ_T0006835.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20123650 20142929 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006836.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20124623 20177264 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006837.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20124656 20143371 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006838.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20129707 20144489 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006839.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20131464 20173450 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006840.1 MGP_C57BL6NJ_G0005651.1 mouse_genomes_project 14 20131464 20144387 + 4933413J09Rik lincRNA lincRNA MGP_C57BL6NJ_T0010208.1 MGP_C57BL6NJ_G0008293.1 mouse_genomes_project 14 64606788 64606906 + Gm27647 miRNA miRNA MGP_C57BL6NJ_T0040701.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101798590 101985576 - MGP_C57BL6NJ_P0040701 Tbc1d4 protein_coding protein_coding MGP_C57BL6NJ_T0040702.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101798598 101820787 - Tbc1d4 protein_coding retained_intron MGP_C57BL6NJ_T0040703.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101798598 101875020 - MGP_C57BL6NJ_P0040703 Tbc1d4 protein_coding protein_coding MGP_C57BL6NJ_T0040704.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101799953 101985029 - MGP_C57BL6NJ_P0040704 Tbc1d4 protein_coding protein_coding MGP_C57BL6NJ_T0040705.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101820135 101985375 - Tbc1d4 protein_coding retained_intron MGP_C57BL6NJ_T0040706.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101820357 101985210 - Tbc1d4 protein_coding retained_intron MGP_C57BL6NJ_T0040707.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101820357 101985210 - Tbc1d4 protein_coding retained_intron MGP_C57BL6NJ_T0040708.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101820526 101868570 - MGP_C57BL6NJ_P0040708 Tbc1d4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040709.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101820537 101985734 - MGP_C57BL6NJ_P0040709 Tbc1d4 protein_coding protein_coding MGP_C57BL6NJ_T0040710.1 MGP_C57BL6NJ_G0022025.1 mouse_genomes_project 14 101872400 101874964 - Tbc1d4 protein_coding retained_intron MGP_C57BL6NJ_T0011627.1 MGP_C57BL6NJ_G0009712.1 mouse_genomes_project 14 25700574 25700876 - Gm24057 misc_RNA misc_RNA MGP_C57BL6NJ_T0002700.1 MGP_C57BL6NJ_G0002580.1 mouse_genomes_project 14 50614116 50614182 + MGP_C57BL6NJ_P0002700 Traj2 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0038735.1 MGP_C57BL6NJ_G0021384.1 mouse_genomes_project 14 4963779 5433970 - MGP_C57BL6NJ_P0038735 Cadps protein_coding protein_coding MGP_C57BL6NJ_T0038736.1 MGP_C57BL6NJ_G0021384.1 mouse_genomes_project 14 4963781 5433970 - MGP_C57BL6NJ_P0038736 Cadps protein_coding protein_coding MGP_C57BL6NJ_T0038737.1 MGP_C57BL6NJ_G0021384.1 mouse_genomes_project 14 4963781 5433970 - MGP_C57BL6NJ_P0038737 Cadps protein_coding protein_coding MGP_C57BL6NJ_T0038738.1 MGP_C57BL6NJ_G0021384.1 mouse_genomes_project 14 4963781 5433970 - MGP_C57BL6NJ_P0038738 Cadps protein_coding protein_coding MGP_C57BL6NJ_T0039424.1 MGP_C57BL6NJ_G0021586.1 mouse_genomes_project 14 40071091 40079127 - MGP_C57BL6NJ_P0039424 Ptgdr protein_coding protein_coding MGP_C57BL6NJ_T0101209.1 MGP_C57BL6NJ_G0039255.1 mouse_genomes_project 14 20284168 20284299 + Gm24031 snoRNA snoRNA MGP_C57BL6NJ_T0038886.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14781319 14821741 + MGP_C57BL6NJ_P0038886 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038887.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14781344 14936956 + Kat6b protein_coding processed_transcript MGP_C57BL6NJ_T0038888.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14802769 14990112 + MGP_C57BL6NJ_P0038888 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038889.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14802784 14990519 + MGP_C57BL6NJ_P0038889 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038890.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14802853 14823273 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038891.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14802867 14990174 + MGP_C57BL6NJ_P0038891 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038892.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14803852 14936380 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038893.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14803884 14824934 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038894.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14803888 14935584 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038895.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14803891 14990519 + MGP_C57BL6NJ_P0038895 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038896.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14821380 14989247 + MGP_C57BL6NJ_P0038896 Kat6b protein_coding protein_coding MGP_C57BL6NJ_T0038897.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14916078 14988914 + MGP_C57BL6NJ_P0038897 Kat6b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038898.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14936939 14940562 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038899.1 MGP_C57BL6NJ_G0021437.1 mouse_genomes_project 14 14937559 14949604 + Kat6b protein_coding retained_intron MGP_C57BL6NJ_T0038958.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17786855 17802174 + MGP_C57BL6NJ_P0038958 E330034G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0038959.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17786877 17800479 + MGP_C57BL6NJ_P0038959 E330034G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0038960.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17786925 17791925 + E330034G19Rik protein_coding retained_intron MGP_C57BL6NJ_T0038961.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17786960 17802181 + MGP_C57BL6NJ_P0038961 E330034G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0038962.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17786973 17791694 + MGP_C57BL6NJ_P0038962 E330034G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0038963.1 MGP_C57BL6NJ_G0021447.1 mouse_genomes_project 14 17787005 17802174 + MGP_C57BL6NJ_P0038963 E330034G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0002690.1 MGP_C57BL6NJ_G0002570.1 mouse_genomes_project 14 50598182 50598242 + MGP_C57BL6NJ_P0002690 Traj15 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040859.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125487554 125557074 - MGP_C57BL6NJ_P0040859 Tmtc4 protein_coding protein_coding MGP_C57BL6NJ_T0040860.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125487561 125557008 - MGP_C57BL6NJ_P0040860 Tmtc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040861.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125488314 125556933 - MGP_C57BL6NJ_P0040861 Tmtc4 protein_coding protein_coding MGP_C57BL6NJ_T0040862.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125488343 125556933 - MGP_C57BL6NJ_P0040862 Tmtc4 protein_coding protein_coding MGP_C57BL6NJ_T0040863.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125488489 125504615 - Tmtc4 protein_coding processed_transcript MGP_C57BL6NJ_T0040864.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125493389 125497717 - Tmtc4 protein_coding retained_intron MGP_C57BL6NJ_T0040865.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125501068 125557031 - Tmtc4 protein_coding retained_intron MGP_C57BL6NJ_T0040866.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125516426 125557066 - MGP_C57BL6NJ_P0040866 Tmtc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040867.1 MGP_C57BL6NJ_G0022082.1 mouse_genomes_project 14 125547408 125556960 - Tmtc4 protein_coding processed_transcript MGP_C57BL6NJ_T0040578.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73014071 73084732 + MGP_C57BL6NJ_P0040578 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040579.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73014129 73031051 + Lcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0040580.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73014129 73085802 + MGP_C57BL6NJ_P0040580 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040581.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73014469 73085751 + MGP_C57BL6NJ_P0040581 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040582.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73014524 73115064 + MGP_C57BL6NJ_P0040582 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040583.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73019302 73116110 + MGP_C57BL6NJ_P0040583 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040584.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73019445 73085742 + MGP_C57BL6NJ_P0040584 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040585.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73060060 73063137 + Lcp1 protein_coding retained_intron MGP_C57BL6NJ_T0040586.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73061321 73083430 + Lcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0040587.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73075616 73116084 + MGP_C57BL6NJ_P0040587 Lcp1 protein_coding protein_coding MGP_C57BL6NJ_T0040588.1 MGP_C57BL6NJ_G0021972.1 mouse_genomes_project 14 73083187 73084654 + Lcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0039303.1 MGP_C57BL6NJ_G0021536.1 mouse_genomes_project 14 27152463 27241080 + MGP_C57BL6NJ_P0039303 Vstm4 protein_coding protein_coding MGP_C57BL6NJ_T0039072.1 MGP_C57BL6NJ_G0021483.1 mouse_genomes_project 14 24001476 24016361 + MGP_C57BL6NJ_P0039072 Actr8 protein_coding protein_coding MGP_C57BL6NJ_T0101206.1 MGP_C57BL6NJ_G0039252.1 mouse_genomes_project 14 4922199 4922328 - Gm24578 snoRNA snoRNA MGP_C57BL6NJ_T0002760.1 MGP_C57BL6NJ_G0002633.1 mouse_genomes_project 14 49324270 49324830 + MGP_C57BL6NJ_P0002760 Trav10n TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039441.1 MGP_C57BL6NJ_G0021592.1 mouse_genomes_project 14 40667246 40698098 + MGP_C57BL6NJ_P0039441 protein_coding protein_coding MGP_C57BL6NJ_T0003669.1 MGP_C57BL6NJ_G0003328.1 mouse_genomes_project 14 13648730 13649302 + 7330404K18Rik antisense antisense MGP_C57BL6NJ_T0040868.1 MGP_C57BL6NJ_G0022083.1 mouse_genomes_project 14 125851198 126216709 - MGP_C57BL6NJ_P0040868 Nalcn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040869.1 MGP_C57BL6NJ_G0022083.1 mouse_genomes_project 14 125851208 126216979 - MGP_C57BL6NJ_P0040869 Nalcn protein_coding protein_coding MGP_C57BL6NJ_T0006893.1 MGP_C57BL6NJ_G0005692.1 mouse_genomes_project 14 74551014 74559310 - 4930444M15Rik lincRNA lincRNA MGP_C57BL6NJ_T0040382.1 MGP_C57BL6NJ_G0021903.1 mouse_genomes_project 14 64385881 64388037 + MGP_C57BL6NJ_P0040382 Gm5464 protein_coding protein_coding MGP_C57BL6NJ_T0013295.1 MGP_C57BL6NJ_G0011340.1 mouse_genomes_project 14 19322795 19323042 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039566.1 MGP_C57BL6NJ_G0021619.1 mouse_genomes_project 14 44972818 45212463 - MGP_C57BL6NJ_P0039566 Slc35f4 protein_coding protein_coding MGP_C57BL6NJ_T0039567.1 MGP_C57BL6NJ_G0021619.1 mouse_genomes_project 14 44977405 44988309 - Slc35f4 protein_coding processed_transcript MGP_C57BL6NJ_T0039568.1 MGP_C57BL6NJ_G0021619.1 mouse_genomes_project 14 44986190 45212896 - MGP_C57BL6NJ_P0039568 Slc35f4 protein_coding protein_coding MGP_C57BL6NJ_T0039569.1 MGP_C57BL6NJ_G0021619.1 mouse_genomes_project 14 44991154 45212703 - Slc35f4 protein_coding retained_intron MGP_C57BL6NJ_T0101246.1 MGP_C57BL6NJ_G0039292.1 mouse_genomes_project 14 94687949 94688075 + Gm24680 snoRNA snoRNA MGP_C57BL6NJ_T0013349.1 MGP_C57BL6NJ_G0011394.1 mouse_genomes_project 14 87386649 87387633 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011639.1 MGP_C57BL6NJ_G0009724.1 mouse_genomes_project 14 62576292 62576368 - Gm27263 misc_RNA misc_RNA MGP_C57BL6NJ_T0013299.1 MGP_C57BL6NJ_G0011344.1 mouse_genomes_project 14 20141910 20142743 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040417.1 MGP_C57BL6NJ_G0021915.1 mouse_genomes_project 14 66201283 66224204 - MGP_C57BL6NJ_P0040417 Adamdec1 protein_coding protein_coding MGP_C57BL6NJ_T0013291.1 MGP_C57BL6NJ_G0011336.1 mouse_genomes_project 14 12224680 12225092 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010184.1 MGP_C57BL6NJ_G0008269.1 mouse_genomes_project 14 20472869 20472931 - Mir7672 miRNA miRNA MGP_C57BL6NJ_T0003705.1 MGP_C57BL6NJ_G0003355.1 mouse_genomes_project 14 51432931 51433262 + Gm29015 antisense antisense MGP_C57BL6NJ_T0006877.1 MGP_C57BL6NJ_G0005681.1 mouse_genomes_project 14 58769757 58788123 + Gm27017 lincRNA lincRNA MGP_C57BL6NJ_T0038710.1 MGP_C57BL6NJ_G0021376.1 mouse_genomes_project 14 649412 665460 - MGP_C57BL6NJ_P0038710 Fam107a protein_coding protein_coding MGP_C57BL6NJ_T0038711.1 MGP_C57BL6NJ_G0021376.1 mouse_genomes_project 14 649412 665462 - MGP_C57BL6NJ_P0038711 Fam107a protein_coding protein_coding MGP_C57BL6NJ_T0038712.1 MGP_C57BL6NJ_G0021376.1 mouse_genomes_project 14 650694 673670 - MGP_C57BL6NJ_P0038712 Fam107a protein_coding protein_coding MGP_C57BL6NJ_T0038713.1 MGP_C57BL6NJ_G0021376.1 mouse_genomes_project 14 652679 665478 - MGP_C57BL6NJ_P0038713 Fam107a protein_coding protein_coding MGP_C57BL6NJ_T0006888.1 MGP_C57BL6NJ_G0005688.1 mouse_genomes_project 14 67220788 67236332 + 4930480K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006889.1 MGP_C57BL6NJ_G0005688.1 mouse_genomes_project 14 67220838 67252116 + 4930480K23Rik lincRNA lincRNA MGP_C57BL6NJ_T0010181.1 MGP_C57BL6NJ_G0008266.1 mouse_genomes_project 14 17544812 17544866 + Mir7210 miRNA miRNA MGP_C57BL6NJ_T0013290.1 MGP_C57BL6NJ_G0011335.1 mouse_genomes_project 14 12191198 12195307 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017836.1 MGP_C57BL6NJ_G0015658.1 mouse_genomes_project 14 45285 112631 - Gm10044 processed_transcript antisense MGP_C57BL6NJ_T0017838.1 MGP_C57BL6NJ_G0015658.1 mouse_genomes_project 14 57385 112555 - Gm10044 processed_transcript antisense MGP_C57BL6NJ_T0017839.1 MGP_C57BL6NJ_G0015658.1 mouse_genomes_project 14 77205 87565 - Gm10044 processed_transcript antisense MGP_C57BL6NJ_T0017840.1 MGP_C57BL6NJ_G0015658.1 mouse_genomes_project 14 84455 87635 - Gm10044 processed_transcript retained_intron MGP_C57BL6NJ_T0017841.1 MGP_C57BL6NJ_G0015658.1 mouse_genomes_project 14 84688 112533 - Gm10044 processed_transcript antisense MGP_C57BL6NJ_T0013279.1 MGP_C57BL6NJ_G0011324.1 mouse_genomes_project 14 2310145 2310749 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039412.1 MGP_C57BL6NJ_G0021578.1 mouse_genomes_project 14 36076642 36093789 - MGP_C57BL6NJ_P0039412 Dydc2 protein_coding protein_coding MGP_C57BL6NJ_T0001059.1 MGP_C57BL6NJ_G0000968.1 mouse_genomes_project 14 104533303 104535019 + TEC TEC MGP_C57BL6NJ_T0040121.1 MGP_C57BL6NJ_G0021801.1 mouse_genomes_project 14 53541931 53621646 + MGP_C57BL6NJ_P0040121 Zmym2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039403.1 MGP_C57BL6NJ_G0021576.1 mouse_genomes_project 14 35924402 35990705 - MGP_C57BL6NJ_P0039403 Tspan14 protein_coding protein_coding MGP_C57BL6NJ_T0039404.1 MGP_C57BL6NJ_G0021576.1 mouse_genomes_project 14 35926015 35957433 - MGP_C57BL6NJ_P0039404 Tspan14 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006826.1 MGP_C57BL6NJ_G0005644.1 mouse_genomes_project 14 16715756 16717109 - A830039N20Rik lincRNA lincRNA MGP_C57BL6NJ_T0013320.1 MGP_C57BL6NJ_G0011365.1 mouse_genomes_project 14 48530305 48530578 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013324.1 MGP_C57BL6NJ_G0011369.1 mouse_genomes_project 14 49064797 49065165 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099923.1 MGP_C57BL6NJ_G0037969.1 mouse_genomes_project 14 53501789 53501848 - Gm27635 snRNA snRNA MGP_C57BL6NJ_T0010177.1 MGP_C57BL6NJ_G0008262.1 mouse_genomes_project 14 6471445 6471525 - Gm27506 miRNA miRNA MGP_C57BL6NJ_T0102855.1 MGP_C57BL6NJ_G0040649.1 mouse_genomes_project 14 47863009 47863472 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040328.1 MGP_C57BL6NJ_G0021884.1 mouse_genomes_project 14 62780818 62805449 - MGP_C57BL6NJ_P0040328 Pnoc protein_coding protein_coding MGP_C57BL6NJ_T0038689.1 MGP_C57BL6NJ_G0021368.1 mouse_genomes_project 14 140846 285248 + MGP_C57BL6NJ_P0038689 Flnb protein_coding protein_coding MGP_C57BL6NJ_T0038690.1 MGP_C57BL6NJ_G0021368.1 mouse_genomes_project 14 141041 266568 + MGP_C57BL6NJ_P0038690 Flnb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038693.1 MGP_C57BL6NJ_G0021370.1 mouse_genomes_project 14 343444 404665 + MGP_C57BL6NJ_P0038693 Abhd6 protein_coding protein_coding MGP_C57BL6NJ_T0038694.1 MGP_C57BL6NJ_G0021370.1 mouse_genomes_project 14 343508 403971 + MGP_C57BL6NJ_P0038694 Abhd6 protein_coding protein_coding MGP_C57BL6NJ_T0040130.1 MGP_C57BL6NJ_G0021808.1 mouse_genomes_project 14 54001820 54135088 - MGP_C57BL6NJ_P0040130 Cryl1 protein_coding protein_coding MGP_C57BL6NJ_T0101234.1 MGP_C57BL6NJ_G0039280.1 mouse_genomes_project 14 65786305 65786427 - Gm22319 snoRNA snoRNA MGP_C57BL6NJ_T0010217.1 MGP_C57BL6NJ_G0008302.1 mouse_genomes_project 14 76414994 76415101 - Gm23652 miRNA miRNA MGP_C57BL6NJ_T0040307.1 MGP_C57BL6NJ_G0021875.1 mouse_genomes_project 14 61407518 61416977 + MGP_C57BL6NJ_P0040307 Prss52 protein_coding protein_coding MGP_C57BL6NJ_T0039651.1 MGP_C57BL6NJ_G0021668.1 mouse_genomes_project 14 46948161 46950216 + MGP_C57BL6NJ_P0039651 Rnase6 protein_coding protein_coding MGP_C57BL6NJ_T0003695.1 MGP_C57BL6NJ_G0003347.1 mouse_genomes_project 14 40948102 40958874 + Gm15601 antisense antisense MGP_C57BL6NJ_T0101229.1 MGP_C57BL6NJ_G0039275.1 mouse_genomes_project 14 59825399 59825531 - Gm23816 snoRNA snoRNA MGP_C57BL6NJ_T0013306.1 MGP_C57BL6NJ_G0011351.1 mouse_genomes_project 14 35529787 35530790 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010220.1 MGP_C57BL6NJ_G0008305.1 mouse_genomes_project 14 97046463 97046568 - Gm27441 miRNA miRNA MGP_C57BL6NJ_T0101216.1 MGP_C57BL6NJ_G0039262.1 mouse_genomes_project 14 28500400 28500489 + Gm24998 snoRNA snoRNA MGP_C57BL6NJ_T0040383.1 MGP_C57BL6NJ_G0021904.1 mouse_genomes_project 14 64428273 64437167 + MGP_C57BL6NJ_P0040383 Pnma2 protein_coding protein_coding MGP_C57BL6NJ_T0040384.1 MGP_C57BL6NJ_G0021904.1 mouse_genomes_project 14 64428311 64435928 + MGP_C57BL6NJ_P0040384 Pnma2 protein_coding protein_coding MGP_C57BL6NJ_T0040385.1 MGP_C57BL6NJ_G0021904.1 mouse_genomes_project 14 64428345 64431837 + Pnma2 protein_coding processed_transcript MGP_C57BL6NJ_T0040386.1 MGP_C57BL6NJ_G0021904.1 mouse_genomes_project 14 64431426 64433148 + Pnma2 protein_coding processed_transcript MGP_C57BL6NJ_T0099006.1 MGP_C57BL6NJ_G0037070.1 mouse_genomes_project 14 60083263 60083382 + n-R5s47 rRNA rRNA MGP_C57BL6NJ_T0039953.1 MGP_C57BL6NJ_G0021744.1 mouse_genomes_project 14 51995326 52010180 + MGP_C57BL6NJ_P0039953 Dhrs4 protein_coding protein_coding MGP_C57BL6NJ_T0040555.1 MGP_C57BL6NJ_G0021963.1 mouse_genomes_project 14 71103729 71126880 - MGP_C57BL6NJ_P0040555 Itm2b protein_coding protein_coding MGP_C57BL6NJ_T0039489.1 MGP_C57BL6NJ_G0021605.1 mouse_genomes_project 14 42759601 42780320 + MGP_C57BL6NJ_P0039489 Socs4 protein_coding protein_coding MGP_C57BL6NJ_T0039613.1 MGP_C57BL6NJ_G0021653.1 mouse_genomes_project 14 46669915 46671782 - MGP_C57BL6NJ_P0039613 Klhl33 protein_coding protein_coding MGP_C57BL6NJ_T0040603.1 MGP_C57BL6NJ_G0021983.1 mouse_genomes_project 14 74088231 74112810 - MGP_C57BL6NJ_P0040603 Gpalpp1 protein_coding protein_coding MGP_C57BL6NJ_T0099901.1 MGP_C57BL6NJ_G0037947.1 mouse_genomes_project 14 11455633 11455789 + Gm22350 snRNA snRNA MGP_C57BL6NJ_T0039800.1 MGP_C57BL6NJ_G0021703.1 mouse_genomes_project 14 48580776 48585533 - MGP_C57BL6NJ_P0039800 Olfr1508 protein_coding protein_coding MGP_C57BL6NJ_T0039801.1 MGP_C57BL6NJ_G0021703.1 mouse_genomes_project 14 48581130 48585567 - MGP_C57BL6NJ_P0039801 Olfr1508 protein_coding protein_coding MGP_C57BL6NJ_T0039802.1 MGP_C57BL6NJ_G0021703.1 mouse_genomes_project 14 48581598 48585162 - MGP_C57BL6NJ_P0039802 Olfr1508 protein_coding protein_coding MGP_C57BL6NJ_T0038860.1 MGP_C57BL6NJ_G0021426.1 mouse_genomes_project 14 13924875 13934224 - MGP_C57BL6NJ_P0038860 Synpo2l protein_coding protein_coding MGP_C57BL6NJ_T0038861.1 MGP_C57BL6NJ_G0021426.1 mouse_genomes_project 14 13924877 13930504 - MGP_C57BL6NJ_P0038861 Synpo2l protein_coding protein_coding MGP_C57BL6NJ_T0038862.1 MGP_C57BL6NJ_G0021426.1 mouse_genomes_project 14 13925347 13934272 - MGP_C57BL6NJ_P0038862 Synpo2l protein_coding protein_coding MGP_C57BL6NJ_T0003742.1 MGP_C57BL6NJ_G0003381.1 mouse_genomes_project 14 125525443 125529667 + Gm15735 antisense antisense MGP_C57BL6NJ_T0006879.1 MGP_C57BL6NJ_G0005683.1 mouse_genomes_project 14 59634322 59638763 - lincRNA lincRNA MGP_C57BL6NJ_T0006880.1 MGP_C57BL6NJ_G0005683.1 mouse_genomes_project 14 59635743 59652761 - lincRNA lincRNA MGP_C57BL6NJ_T0006873.1 MGP_C57BL6NJ_G0005677.1 mouse_genomes_project 14 54797334 54801704 + 3110083C13Rik lincRNA lincRNA MGP_C57BL6NJ_T0039586.1 MGP_C57BL6NJ_G0021631.1 mouse_genomes_project 14 46026635 46027679 - MGP_C57BL6NJ_P0039586 Olfr732 protein_coding protein_coding MGP_C57BL6NJ_T0013328.1 MGP_C57BL6NJ_G0011373.1 mouse_genomes_project 14 50714364 50714690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039296.1 MGP_C57BL6NJ_G0021532.1 mouse_genomes_project 14 26878720 26931531 + MGP_C57BL6NJ_P0039296 Prrxl1 protein_coding protein_coding MGP_C57BL6NJ_T0039297.1 MGP_C57BL6NJ_G0021532.1 mouse_genomes_project 14 26878721 26910555 + MGP_C57BL6NJ_P0039297 Prrxl1 protein_coding protein_coding MGP_C57BL6NJ_T0039298.1 MGP_C57BL6NJ_G0021532.1 mouse_genomes_project 14 26878854 26910531 + MGP_C57BL6NJ_P0039298 Prrxl1 protein_coding protein_coding MGP_C57BL6NJ_T0039299.1 MGP_C57BL6NJ_G0021532.1 mouse_genomes_project 14 26879180 26931573 + MGP_C57BL6NJ_P0039299 Prrxl1 protein_coding protein_coding MGP_C57BL6NJ_T0040835.1 MGP_C57BL6NJ_G0022076.1 mouse_genomes_project 14 124964317 124981491 - MGP_C57BL6NJ_P0040835 Gm5089 protein_coding protein_coding MGP_C57BL6NJ_T0001036.1 MGP_C57BL6NJ_G0000945.1 mouse_genomes_project 14 15324868 15328533 + TEC TEC MGP_C57BL6NJ_T0040602.1 MGP_C57BL6NJ_G0021982.1 mouse_genomes_project 14 73944756 73955027 + MGP_C57BL6NJ_P0040602 Kctd4 protein_coding protein_coding MGP_C57BL6NJ_T0010223.1 MGP_C57BL6NJ_G0008308.1 mouse_genomes_project 14 104202346 104202451 - Gm22877 miRNA miRNA MGP_C57BL6NJ_T0040711.1 MGP_C57BL6NJ_G0022026.1 mouse_genomes_project 14 102017806 102024727 - MGP_C57BL6NJ_P0040711 Commd6 protein_coding protein_coding MGP_C57BL6NJ_T0040712.1 MGP_C57BL6NJ_G0022026.1 mouse_genomes_project 14 102017807 102024512 - MGP_C57BL6NJ_P0040712 Commd6 protein_coding protein_coding MGP_C57BL6NJ_T0040713.1 MGP_C57BL6NJ_G0022026.1 mouse_genomes_project 14 102024096 102024727 - Commd6 protein_coding retained_intron MGP_C57BL6NJ_T0040667.1 MGP_C57BL6NJ_G0022008.1 mouse_genomes_project 14 78183786 78189683 - MGP_C57BL6NJ_P0040667 Gm10845 protein_coding protein_coding MGP_C57BL6NJ_T0039059.1 MGP_C57BL6NJ_G0021476.1 mouse_genomes_project 14 21294255 21362671 + MGP_C57BL6NJ_P0039059 Fam208a protein_coding protein_coding MGP_C57BL6NJ_T0040601.1 MGP_C57BL6NJ_G0021981.1 mouse_genomes_project 14 73886648 74006038 - MGP_C57BL6NJ_P0040601 Gtf2f2 protein_coding protein_coding MGP_C57BL6NJ_T0013350.1 MGP_C57BL6NJ_G0011395.1 mouse_genomes_project 14 96150837 96151657 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040576.1 MGP_C57BL6NJ_G0021970.1 mouse_genomes_project 14 72879543 72918557 + MGP_C57BL6NJ_P0040576 5031414D18Rik protein_coding protein_coding MGP_C57BL6NJ_T0039670.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916210 47925220 + MGP_C57BL6NJ_P0039670 Mettl17 protein_coding protein_coding MGP_C57BL6NJ_T0039671.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916244 47925212 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039672.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916246 47922936 + MGP_C57BL6NJ_P0039672 Mettl17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039673.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916257 47925145 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039674.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916257 47925145 + MGP_C57BL6NJ_P0039674 Mettl17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039675.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916257 47925145 + MGP_C57BL6NJ_P0039675 Mettl17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039676.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916280 47922654 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039677.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916286 47917027 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039678.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916303 47927293 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039679.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916306 47922276 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039680.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916314 47925087 + MGP_C57BL6NJ_P0039680 Mettl17 protein_coding protein_coding MGP_C57BL6NJ_T0039681.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916320 47918641 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039682.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916322 47917031 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0039683.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916509 47916789 + MGP_C57BL6NJ_P0039683 Mettl17 protein_coding protein_coding MGP_C57BL6NJ_T0039684.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47916770 47924080 + MGP_C57BL6NJ_P0039684 Mettl17 protein_coding protein_coding MGP_C57BL6NJ_T0039685.1 MGP_C57BL6NJ_G0021681.1 mouse_genomes_project 14 47918547 47922365 + Mettl17 protein_coding retained_intron MGP_C57BL6NJ_T0017898.1 MGP_C57BL6NJ_G0015681.1 mouse_genomes_project 14 125481613 125496274 + 4930594M22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017899.1 MGP_C57BL6NJ_G0015681.1 mouse_genomes_project 14 125481650 125498026 + 4930594M22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017900.1 MGP_C57BL6NJ_G0015681.1 mouse_genomes_project 14 125481658 125506053 + 4930594M22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002757.1 MGP_C57BL6NJ_G0002630.1 mouse_genomes_project 14 49312648 49313154 + MGP_C57BL6NJ_P0002757 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0010235.1 MGP_C57BL6NJ_G0008320.1 mouse_genomes_project 14 120333803 120333906 + Mir6241 miRNA miRNA MGP_C57BL6NJ_T0038745.1 MGP_C57BL6NJ_G0021387.1 mouse_genomes_project 14 6507251 6611038 - MGP_C57BL6NJ_P0038745 Gm281 protein_coding protein_coding MGP_C57BL6NJ_T0003682.1 MGP_C57BL6NJ_G0003334.1 mouse_genomes_project 14 18954547 18960717 - Zmiz1os1 antisense antisense MGP_C57BL6NJ_T0039271.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26402973 26427576 + MGP_C57BL6NJ_P0039271 protein_coding protein_coding MGP_C57BL6NJ_T0039272.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26403046 26429397 + MGP_C57BL6NJ_P0039272 protein_coding protein_coding MGP_C57BL6NJ_T0039273.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26403089 26429282 + MGP_C57BL6NJ_P0039273 protein_coding protein_coding MGP_C57BL6NJ_T0039274.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26408900 26420013 + MGP_C57BL6NJ_P0039274 protein_coding protein_coding MGP_C57BL6NJ_T0039275.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26408900 26420309 + MGP_C57BL6NJ_P0039275 protein_coding protein_coding MGP_C57BL6NJ_T0039276.1 MGP_C57BL6NJ_G0021523.1 mouse_genomes_project 14 26409228 26420236 + MGP_C57BL6NJ_P0039276 protein_coding protein_coding MGP_C57BL6NJ_T0040104.1 MGP_C57BL6NJ_G0021793.1 mouse_genomes_project 14 52857645 52861050 - MGP_C57BL6NJ_P0040104 Gzmb protein_coding protein_coding MGP_C57BL6NJ_T0040448.1 MGP_C57BL6NJ_G0021930.1 mouse_genomes_project 14 67271228 67298891 - MGP_C57BL6NJ_P0040448 Rhobtb2 protein_coding protein_coding MGP_C57BL6NJ_T0002686.1 MGP_C57BL6NJ_G0002566.1 mouse_genomes_project 14 50594145 50594206 + MGP_C57BL6NJ_P0002686 Traj19 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040637.1 MGP_C57BL6NJ_G0021994.1 mouse_genomes_project 14 76445483 76476064 - MGP_C57BL6NJ_P0040637 Tnfsf11 protein_coding protein_coding MGP_C57BL6NJ_T0002764.1 MGP_C57BL6NJ_G0002637.1 mouse_genomes_project 14 49481527 49481762 + MGP_C57BL6NJ_P0002764 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101220.1 MGP_C57BL6NJ_G0039266.1 mouse_genomes_project 14 48123953 48124023 + Gm22354 snoRNA snoRNA MGP_C57BL6NJ_T0039596.1 MGP_C57BL6NJ_G0021638.1 mouse_genomes_project 14 46189231 46190161 + MGP_C57BL6NJ_P0039596 Olfr739 protein_coding protein_coding MGP_C57BL6NJ_T0040592.1 MGP_C57BL6NJ_G0021975.1 mouse_genomes_project 14 73374213 73448458 + MGP_C57BL6NJ_P0040592 Siah3 protein_coding protein_coding MGP_C57BL6NJ_T0040024.1 MGP_C57BL6NJ_G0021757.1 mouse_genomes_project 14 52149394 52156702 + MGP_C57BL6NJ_P0040024 Rec8 protein_coding protein_coding MGP_C57BL6NJ_T0040025.1 MGP_C57BL6NJ_G0021757.1 mouse_genomes_project 14 52149540 52150174 + Rec8 protein_coding retained_intron MGP_C57BL6NJ_T0040026.1 MGP_C57BL6NJ_G0021757.1 mouse_genomes_project 14 52154875 52155817 + Rec8 protein_coding retained_intron MGP_C57BL6NJ_T0040027.1 MGP_C57BL6NJ_G0021757.1 mouse_genomes_project 14 52156225 52156702 + Rec8 protein_coding retained_intron MGP_C57BL6NJ_T0039134.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125575 25127359 - MGP_C57BL6NJ_P0039134 Spcs1 protein_coding protein_coding MGP_C57BL6NJ_T0039135.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125575 25127422 - MGP_C57BL6NJ_P0039135 Spcs1 protein_coding protein_coding MGP_C57BL6NJ_T0039136.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125576 25127416 - MGP_C57BL6NJ_P0039136 Spcs1 protein_coding protein_coding MGP_C57BL6NJ_T0039137.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125576 25127113 - MGP_C57BL6NJ_P0039137 Spcs1 protein_coding protein_coding MGP_C57BL6NJ_T0039138.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125577 25127119 - Spcs1 protein_coding retained_intron MGP_C57BL6NJ_T0039139.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25125966 25127100 - Spcs1 protein_coding retained_intron MGP_C57BL6NJ_T0039140.1 MGP_C57BL6NJ_G0021498.1 mouse_genomes_project 14 25126145 25127117 - MGP_C57BL6NJ_P0039140 Spcs1 protein_coding protein_coding MGP_C57BL6NJ_T0013357.1 MGP_C57BL6NJ_G0011402.1 mouse_genomes_project 14 100517489 100517793 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039987.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52108832 52112056 + MGP_C57BL6NJ_P0039987 Psme1 protein_coding protein_coding MGP_C57BL6NJ_T0039988.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109069 52112238 + MGP_C57BL6NJ_P0039988 Psme1 protein_coding protein_coding MGP_C57BL6NJ_T0039989.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109114 52111352 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039990.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109165 52112238 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039991.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109177 52112084 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039992.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109195 52111113 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039993.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109247 52111652 + MGP_C57BL6NJ_P0039993 Psme1 protein_coding protein_coding MGP_C57BL6NJ_T0039994.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109284 52112091 + MGP_C57BL6NJ_P0039994 Psme1 protein_coding protein_coding MGP_C57BL6NJ_T0039995.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52109284 52112091 + MGP_C57BL6NJ_P0039995 Psme1 protein_coding protein_coding MGP_C57BL6NJ_T0039996.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52110673 52112161 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039997.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52110743 52111657 + Psme1 protein_coding retained_intron MGP_C57BL6NJ_T0039998.1 MGP_C57BL6NJ_G0021752.1 mouse_genomes_project 14 52111457 52112239 + MGP_C57BL6NJ_P0039998 Psme1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002779.1 MGP_C57BL6NJ_G0002649.1 mouse_genomes_project 14 49890650 49891128 + MGP_C57BL6NJ_P0002779 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002781.1 MGP_C57BL6NJ_G0002651.1 mouse_genomes_project 14 49935638 49936227 + MGP_C57BL6NJ_P0002781 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101240.1 MGP_C57BL6NJ_G0039286.1 mouse_genomes_project 14 87922644 87922729 - Gm24745 snoRNA snoRNA MGP_C57BL6NJ_T0039016.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191415 20326266 - MGP_C57BL6NJ_P0039016 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039017.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191420 20257128 - MGP_C57BL6NJ_P0039017 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039018.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191421 20243396 - MGP_C57BL6NJ_P0039018 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039019.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191422 20325075 - MGP_C57BL6NJ_P0039019 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039020.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191647 20324953 - MGP_C57BL6NJ_P0039020 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039021.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20191647 20324953 - MGP_C57BL6NJ_P0039021 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039022.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20192543 20326230 - MGP_C57BL6NJ_P0039022 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039023.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20192977 20243383 - MGP_C57BL6NJ_P0039023 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039024.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20200697 20222030 - MGP_C57BL6NJ_P0039024 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039025.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20205490 20221861 - Slmap protein_coding processed_transcript MGP_C57BL6NJ_T0039026.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20205566 20208343 - Slmap protein_coding retained_intron MGP_C57BL6NJ_T0039027.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20205789 20222096 - MGP_C57BL6NJ_P0039027 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039028.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20206515 20218427 - Slmap protein_coding retained_intron MGP_C57BL6NJ_T0039029.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20216365 20221944 - Slmap protein_coding retained_intron MGP_C57BL6NJ_T0039030.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20221829 20246905 - MGP_C57BL6NJ_P0039030 Slmap protein_coding protein_coding MGP_C57BL6NJ_T0039031.1 MGP_C57BL6NJ_G0021465.1 mouse_genomes_project 14 20243010 20246896 - Slmap protein_coding retained_intron MGP_C57BL6NJ_T0002645.1 MGP_C57BL6NJ_G0002529.1 mouse_genomes_project 14 50522055 50522114 + MGP_C57BL6NJ_P0002645 Trdj2 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040177.1 MGP_C57BL6NJ_G0021821.1 mouse_genomes_project 14 56016740 56031539 - MGP_C57BL6NJ_P0040177 Gm5142 protein_coding protein_coding MGP_C57BL6NJ_T0099903.1 MGP_C57BL6NJ_G0037949.1 mouse_genomes_project 14 14749311 14749403 + Gm25864 snRNA snRNA MGP_C57BL6NJ_T0040054.1 MGP_C57BL6NJ_G0021760.1 mouse_genomes_project 14 52181470 52183828 + MGP_C57BL6NJ_P0040054 Tssk4 protein_coding protein_coding MGP_C57BL6NJ_T0040055.1 MGP_C57BL6NJ_G0021760.1 mouse_genomes_project 14 52181472 52183828 + MGP_C57BL6NJ_P0040055 Tssk4 protein_coding protein_coding MGP_C57BL6NJ_T0040056.1 MGP_C57BL6NJ_G0021760.1 mouse_genomes_project 14 52181637 52183737 + MGP_C57BL6NJ_P0040056 Tssk4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010194.1 MGP_C57BL6NJ_G0008279.1 mouse_genomes_project 14 51043394 51043503 - Mir686 miRNA miRNA MGP_C57BL6NJ_T0040264.1 MGP_C57BL6NJ_G0021857.1 mouse_genomes_project 14 60239858 60248006 + MGP_C57BL6NJ_P0040264 Defb43 protein_coding protein_coding MGP_C57BL6NJ_T0039073.1 MGP_C57BL6NJ_G0021484.1 mouse_genomes_project 14 24019280 24031953 - MGP_C57BL6NJ_P0039073 Il17rb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039074.1 MGP_C57BL6NJ_G0021484.1 mouse_genomes_project 14 24019307 24032036 - MGP_C57BL6NJ_P0039074 Il17rb protein_coding protein_coding MGP_C57BL6NJ_T0039075.1 MGP_C57BL6NJ_G0021484.1 mouse_genomes_project 14 24019307 24032036 - MGP_C57BL6NJ_P0039075 Il17rb protein_coding protein_coding MGP_C57BL6NJ_T0039076.1 MGP_C57BL6NJ_G0021484.1 mouse_genomes_project 14 24019338 24031949 - MGP_C57BL6NJ_P0039076 Il17rb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013318.1 MGP_C57BL6NJ_G0011363.1 mouse_genomes_project 14 47244703 47244886 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101242.1 MGP_C57BL6NJ_G0039288.1 mouse_genomes_project 14 89645280 89645411 + Gm25495 snoRNA snoRNA MGP_C57BL6NJ_T0038760.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7563006 7796226 + MGP_C57BL6NJ_P0038760 Nek10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038761.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7577434 7788030 + MGP_C57BL6NJ_P0038761 Nek10 protein_coding protein_coding MGP_C57BL6NJ_T0038762.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7577484 7796226 + MGP_C57BL6NJ_P0038762 Nek10 protein_coding protein_coding MGP_C57BL6NJ_T0038763.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7637026 7751190 + Nek10 protein_coding processed_transcript MGP_C57BL6NJ_T0038764.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7641322 7752940 + Nek10 protein_coding retained_intron MGP_C57BL6NJ_T0038765.1 MGP_C57BL6NJ_G0021396.1 mouse_genomes_project 14 7711085 7796276 + MGP_C57BL6NJ_P0038765 Nek10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039439.1 MGP_C57BL6NJ_G0021590.1 mouse_genomes_project 14 40598464 40634175 - MGP_C57BL6NJ_P0039439 Ero1l protein_coding protein_coding MGP_C57BL6NJ_T0010199.1 MGP_C57BL6NJ_G0008284.1 mouse_genomes_project 14 54567629 54567693 + Mir3077 miRNA miRNA MGP_C57BL6NJ_T0038869.1 MGP_C57BL6NJ_G0021432.1 mouse_genomes_project 14 14002622 14062288 - MGP_C57BL6NJ_P0038869 Camk2g protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038870.1 MGP_C57BL6NJ_G0021432.1 mouse_genomes_project 14 14002627 14062364 - MGP_C57BL6NJ_P0038870 Camk2g protein_coding protein_coding MGP_C57BL6NJ_T0038871.1 MGP_C57BL6NJ_G0021432.1 mouse_genomes_project 14 14002627 14062364 - MGP_C57BL6NJ_P0038871 Camk2g protein_coding protein_coding MGP_C57BL6NJ_T0038872.1 MGP_C57BL6NJ_G0021432.1 mouse_genomes_project 14 14002627 14062364 - MGP_C57BL6NJ_P0038872 Camk2g protein_coding protein_coding MGP_C57BL6NJ_T0039343.1 MGP_C57BL6NJ_G0021551.1 mouse_genomes_project 14 28540112 28548610 - MGP_C57BL6NJ_P0039343 Npy4r protein_coding protein_coding MGP_C57BL6NJ_T0017880.1 MGP_C57BL6NJ_G0015672.1 mouse_genomes_project 14 100503239 100546797 + 4930517O19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017881.1 MGP_C57BL6NJ_G0015672.1 mouse_genomes_project 14 100503286 100547738 + 4930517O19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017882.1 MGP_C57BL6NJ_G0015672.1 mouse_genomes_project 14 100503286 100546279 + 4930517O19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0099937.1 MGP_C57BL6NJ_G0037983.1 mouse_genomes_project 14 98020341 98020504 - Gm25831 snRNA snRNA MGP_C57BL6NJ_T0006848.1 MGP_C57BL6NJ_G0005658.1 mouse_genomes_project 14 34484894 34521198 + 1700109I08Rik lincRNA lincRNA MGP_C57BL6NJ_T0006900.1 MGP_C57BL6NJ_G0005697.1 mouse_genomes_project 14 116826665 116830514 + Mir17hg lincRNA lincRNA MGP_C57BL6NJ_T0010185.1 MGP_C57BL6NJ_G0008270.1 mouse_genomes_project 14 21242411 21242530 - Gm23633 miRNA miRNA MGP_C57BL6NJ_T0002752.1 MGP_C57BL6NJ_G0002625.1 mouse_genomes_project 14 49050486 49083141 + MGP_C57BL6NJ_P0002752 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039602.1 MGP_C57BL6NJ_G0021643.1 mouse_genomes_project 14 46380083 46381188 + MGP_C57BL6NJ_P0039602 Olfr744 protein_coding protein_coding MGP_C57BL6NJ_T0003737.1 MGP_C57BL6NJ_G0003378.1 mouse_genomes_project 14 104243778 104250238 - Slain1os antisense antisense MGP_C57BL6NJ_T0013346.1 MGP_C57BL6NJ_G0011391.1 mouse_genomes_project 14 72570799 72584566 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101211.1 MGP_C57BL6NJ_G0039257.1 mouse_genomes_project 14 25141437 25141517 - Snord69 snoRNA snoRNA MGP_C57BL6NJ_T0002736.1 MGP_C57BL6NJ_G0002611.1 mouse_genomes_project 14 48695550 48696404 + MGP_C57BL6NJ_P0002736 Trav2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002737.1 MGP_C57BL6NJ_G0002611.1 mouse_genomes_project 14 48695645 48696404 + MGP_C57BL6NJ_P0002737 Trav2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040488.1 MGP_C57BL6NJ_G0021944.1 mouse_genomes_project 14 68088047 68091188 - MGP_C57BL6NJ_P0040488 Sftpc protein_coding protein_coding MGP_C57BL6NJ_T0013309.1 MGP_C57BL6NJ_G0011354.1 mouse_genomes_project 14 40512598 40513508 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003725.1 MGP_C57BL6NJ_G0003371.1 mouse_genomes_project 14 66978477 66999894 + Gm27175 antisense antisense MGP_C57BL6NJ_T0040657.1 MGP_C57BL6NJ_G0022005.1 mouse_genomes_project 14 77891168 77936430 + MGP_C57BL6NJ_P0040657 Sugt1 protein_coding protein_coding MGP_C57BL6NJ_T0002681.1 MGP_C57BL6NJ_G0002561.1 mouse_genomes_project 14 50589429 50589492 + MGP_C57BL6NJ_P0002681 Traj24 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040466.1 MGP_C57BL6NJ_G0021937.1 mouse_genomes_project 14 67721946 67750631 - MGP_C57BL6NJ_P0040466 Sorbs3 protein_coding protein_coding MGP_C57BL6NJ_T0040467.1 MGP_C57BL6NJ_G0021937.1 mouse_genomes_project 14 67722648 67748882 - MGP_C57BL6NJ_P0040467 Sorbs3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040813.1 MGP_C57BL6NJ_G0022063.1 mouse_genomes_project 14 122545352 122711217 + MGP_C57BL6NJ_P0040813 Mbnl2 protein_coding protein_coding MGP_C57BL6NJ_T0040814.1 MGP_C57BL6NJ_G0022063.1 mouse_genomes_project 14 122545352 122711217 + MGP_C57BL6NJ_P0040814 Mbnl2 protein_coding protein_coding MGP_C57BL6NJ_T0038992.1 MGP_C57BL6NJ_G0021458.1 mouse_genomes_project 14 19888440 19891877 - MGP_C57BL6NJ_P0038992 Tmem254b protein_coding protein_coding MGP_C57BL6NJ_T0038993.1 MGP_C57BL6NJ_G0021458.1 mouse_genomes_project 14 19888444 19891483 - MGP_C57BL6NJ_P0038993 Tmem254b protein_coding protein_coding MGP_C57BL6NJ_T0040092.1 MGP_C57BL6NJ_G0021781.1 mouse_genomes_project 14 52609298 52617581 - MGP_C57BL6NJ_P0040092 protein_coding protein_coding MGP_C57BL6NJ_T0099913.1 MGP_C57BL6NJ_G0037959.1 mouse_genomes_project 14 44408516 44408621 - Gm22699 snRNA snRNA MGP_C57BL6NJ_T0099948.1 MGP_C57BL6NJ_G0037994.1 mouse_genomes_project 14 112062464 112062567 + Gm26255 snRNA snRNA MGP_C57BL6NJ_T0040329.1 MGP_C57BL6NJ_G0021885.1 mouse_genomes_project 14 62918406 62982646 - MGP_C57BL6NJ_P0040329 Elp3 protein_coding protein_coding MGP_C57BL6NJ_T0013303.1 MGP_C57BL6NJ_G0011348.1 mouse_genomes_project 14 26534080 26535236 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039694.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028573 48031322 + MGP_C57BL6NJ_P0039694 Arhgef40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039695.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028687 48052742 + MGP_C57BL6NJ_P0039695 Arhgef40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039696.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028692 48053338 + MGP_C57BL6NJ_P0039696 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039697.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028698 48034510 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039698.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028718 48052709 + MGP_C57BL6NJ_P0039698 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039699.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028740 48052720 + MGP_C57BL6NJ_P0039699 Arhgef40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039700.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028763 48052714 + MGP_C57BL6NJ_P0039700 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039701.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028764 48052710 + MGP_C57BL6NJ_P0039701 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039702.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028766 48029927 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039703.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028769 48032971 + MGP_C57BL6NJ_P0039703 Arhgef40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039704.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028785 48052710 + MGP_C57BL6NJ_P0039704 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039705.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028820 48035501 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039706.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48028825 48032623 + MGP_C57BL6NJ_P0039706 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039707.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48035488 48039961 + Arhgef40 protein_coding processed_transcript MGP_C57BL6NJ_T0039708.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48035612 48040245 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039709.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48040241 48043228 + MGP_C57BL6NJ_P0039709 Arhgef40 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039710.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48041419 48042416 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039711.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48043818 48052716 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039712.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48049444 48052710 + MGP_C57BL6NJ_P0039712 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039713.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48049472 48051050 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039714.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48049519 48052713 + MGP_C57BL6NJ_P0039714 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039715.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48050657 48052108 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039716.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48051168 48052628 + MGP_C57BL6NJ_P0039716 Arhgef40 protein_coding protein_coding MGP_C57BL6NJ_T0039717.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48051574 48052458 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039718.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48051588 48052400 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0039719.1 MGP_C57BL6NJ_G0021686.1 mouse_genomes_project 14 48051675 48052399 + Arhgef40 protein_coding retained_intron MGP_C57BL6NJ_T0040309.1 MGP_C57BL6NJ_G0021877.1 mouse_genomes_project 14 61993393 62162343 + MGP_C57BL6NJ_P0040309 Kif13b protein_coding protein_coding MGP_C57BL6NJ_T0040310.1 MGP_C57BL6NJ_G0021877.1 mouse_genomes_project 14 61993464 62165667 + MGP_C57BL6NJ_P0040310 Kif13b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013307.1 MGP_C57BL6NJ_G0011352.1 mouse_genomes_project 14 38745177 38747474 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040228.1 MGP_C57BL6NJ_G0021839.1 mouse_genomes_project 14 58037319 58115997 - MGP_C57BL6NJ_P0040228 Tnfrsf19 protein_coding protein_coding MGP_C57BL6NJ_T0040229.1 MGP_C57BL6NJ_G0021839.1 mouse_genomes_project 14 58037319 58126517 - MGP_C57BL6NJ_P0040229 Tnfrsf19 protein_coding protein_coding MGP_C57BL6NJ_T0039859.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070785 51120345 - MGP_C57BL6NJ_P0039859 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039860.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070785 51082243 - MGP_C57BL6NJ_P0039860 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039861.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070785 51082322 - MGP_C57BL6NJ_P0039861 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039862.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070785 51082294 - MGP_C57BL6NJ_P0039862 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039863.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070786 51082328 - MGP_C57BL6NJ_P0039863 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039864.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070786 51120030 - MGP_C57BL6NJ_P0039864 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039865.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51070791 51082309 - MGP_C57BL6NJ_P0039865 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039866.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51071352 51120345 - MGP_C57BL6NJ_P0039866 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039867.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51071352 51081866 - MGP_C57BL6NJ_P0039867 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039868.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51071526 51073161 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039869.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51071912 51072835 - MGP_C57BL6NJ_P0039869 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039870.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51072879 51074491 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039871.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51073351 51077205 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039872.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51073621 51074672 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039873.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51073835 51078895 - Acin1 protein_coding processed_transcript MGP_C57BL6NJ_T0039874.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51073927 51076969 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039875.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51074363 51082312 - MGP_C57BL6NJ_P0039875 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039876.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51075180 51078534 - Acin1 protein_coding processed_transcript MGP_C57BL6NJ_T0039877.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51079411 51082308 - Acin1 protein_coding processed_transcript MGP_C57BL6NJ_T0039878.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51079464 51082308 - Acin1 protein_coding processed_transcript MGP_C57BL6NJ_T0039879.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51080026 51092333 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039880.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51080141 51082318 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039881.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51090434 51093304 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0039882.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51093752 51119474 - MGP_C57BL6NJ_P0039882 Acin1 protein_coding protein_coding MGP_C57BL6NJ_T0039883.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51108864 51120047 - Acin1 protein_coding processed_transcript MGP_C57BL6NJ_T0039884.1 MGP_C57BL6NJ_G0021722.1 mouse_genomes_project 14 51112348 51120029 - Acin1 protein_coding retained_intron MGP_C57BL6NJ_T0001050.1 MGP_C57BL6NJ_G0000959.1 mouse_genomes_project 14 66895937 66899498 - TEC TEC MGP_C57BL6NJ_T0101232.1 MGP_C57BL6NJ_G0039278.1 mouse_genomes_project 14 64487330 64487463 + Gm24258 snoRNA snoRNA MGP_C57BL6NJ_T0039376.1 MGP_C57BL6NJ_G0021564.1 mouse_genomes_project 14 29269995 30096284 + MGP_C57BL6NJ_P0039376 Grid1 protein_coding protein_coding MGP_C57BL6NJ_T0039070.1 MGP_C57BL6NJ_G0021482.1 mouse_genomes_project 14 23991436 23998203 + MGP_C57BL6NJ_P0039070 Selk protein_coding protein_coding MGP_C57BL6NJ_T0039071.1 MGP_C57BL6NJ_G0021482.1 mouse_genomes_project 14 23991564 23996726 + Selk protein_coding processed_transcript MGP_C57BL6NJ_T0002800.1 MGP_C57BL6NJ_G0002666.1 mouse_genomes_project 14 50206687 50207281 + MGP_C57BL6NJ_P0002800 Trav19 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039355.1 MGP_C57BL6NJ_G0021557.1 mouse_genomes_project 14 28783216 28787732 - MGP_C57BL6NJ_P0039355 Sncg protein_coding protein_coding MGP_C57BL6NJ_T0001043.1 MGP_C57BL6NJ_G0000952.1 mouse_genomes_project 14 51572305 51574487 - TEC TEC MGP_C57BL6NJ_T0017848.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58717185 58803063 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017849.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58717380 58803004 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017850.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58717818 58802992 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017851.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58717935 58769630 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017852.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58718070 58769595 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017853.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58738329 58739886 - Dleu2 processed_transcript TEC MGP_C57BL6NJ_T0017854.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58739607 58803015 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017855.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58745317 58769570 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017856.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58747929 58751990 - Dleu2 processed_transcript TEC MGP_C57BL6NJ_T0017857.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58748740 58803015 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017858.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58752396 58769430 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017859.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58752446 58769630 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017860.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58755324 58803004 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017861.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58763354 58803003 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0017862.1 MGP_C57BL6NJ_G0015663.1 mouse_genomes_project 14 58763428 58803015 - Dleu2 processed_transcript lincRNA MGP_C57BL6NJ_T0013347.1 MGP_C57BL6NJ_G0011392.1 mouse_genomes_project 14 72570799 72584561 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101233.1 MGP_C57BL6NJ_G0039279.1 mouse_genomes_project 14 65143129 65143261 + Gm24981 snoRNA snoRNA MGP_C57BL6NJ_T0101215.1 MGP_C57BL6NJ_G0039261.1 mouse_genomes_project 14 27523238 27523367 + Gm25498 snoRNA snoRNA MGP_C57BL6NJ_T0006865.1 MGP_C57BL6NJ_G0005670.1 mouse_genomes_project 14 47262218 47339871 + lincRNA lincRNA MGP_C57BL6NJ_T0039348.1 MGP_C57BL6NJ_G0021554.1 mouse_genomes_project 14 28640206 28717234 - MGP_C57BL6NJ_P0039348 Fam35a protein_coding protein_coding MGP_C57BL6NJ_T0040285.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60766695 60784322 - MGP_C57BL6NJ_P0040285 Tdh protein_coding protein_coding MGP_C57BL6NJ_T0040286.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60767000 60774608 - MGP_C57BL6NJ_P0040286 Tdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040287.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60767055 60774608 - MGP_C57BL6NJ_P0040287 Tdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040288.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60767055 60774608 - MGP_C57BL6NJ_P0040288 Tdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040289.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60769967 60771488 - Tdh protein_coding retained_intron MGP_C57BL6NJ_T0040290.1 MGP_C57BL6NJ_G0021866.1 mouse_genomes_project 14 60778204 60783986 - Tdh protein_coding processed_transcript MGP_C57BL6NJ_T0010233.1 MGP_C57BL6NJ_G0008318.1 mouse_genomes_project 14 116828213 116828293 + Mir92-1 miRNA miRNA MGP_C57BL6NJ_T0101238.1 MGP_C57BL6NJ_G0039284.1 mouse_genomes_project 14 82067624 82067758 + Gm24774 snoRNA snoRNA MGP_C57BL6NJ_T0039426.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40420819 40523617 - MGP_C57BL6NJ_P0039426 Txndc16 protein_coding protein_coding MGP_C57BL6NJ_T0039427.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40421270 40523648 - MGP_C57BL6NJ_P0039427 Txndc16 protein_coding protein_coding MGP_C57BL6NJ_T0039428.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40421278 40524551 - MGP_C57BL6NJ_P0039428 Txndc16 protein_coding protein_coding MGP_C57BL6NJ_T0039429.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40456638 40461143 - Txndc16 protein_coding retained_intron MGP_C57BL6NJ_T0039430.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40459172 40523613 - Txndc16 protein_coding retained_intron MGP_C57BL6NJ_T0039431.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40460041 40523605 - Txndc16 protein_coding retained_intron MGP_C57BL6NJ_T0039432.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40508174 40523620 - MGP_C57BL6NJ_P0039432 Txndc16 protein_coding protein_coding MGP_C57BL6NJ_T0039433.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40509453 40523625 - Txndc16 protein_coding retained_intron MGP_C57BL6NJ_T0039434.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40514369 40523587 - Txndc16 protein_coding processed_transcript MGP_C57BL6NJ_T0039435.1 MGP_C57BL6NJ_G0021588.1 mouse_genomes_project 14 40522110 40523613 - Txndc16 protein_coding processed_transcript MGP_C57BL6NJ_T0040062.1 MGP_C57BL6NJ_G0021765.1 mouse_genomes_project 14 52235046 52248522 - MGP_C57BL6NJ_P0040062 Tgm1 protein_coding protein_coding MGP_C57BL6NJ_T0040063.1 MGP_C57BL6NJ_G0021765.1 mouse_genomes_project 14 52235046 52248522 - MGP_C57BL6NJ_P0040063 Tgm1 protein_coding protein_coding MGP_C57BL6NJ_T0040064.1 MGP_C57BL6NJ_G0021765.1 mouse_genomes_project 14 52235046 52248118 - MGP_C57BL6NJ_P0040064 Tgm1 protein_coding protein_coding MGP_C57BL6NJ_T0039647.1 MGP_C57BL6NJ_G0021666.1 mouse_genomes_project 14 46906076 46922663 + MGP_C57BL6NJ_P0039647 Rnase4 protein_coding protein_coding MGP_C57BL6NJ_T0039649.1 MGP_C57BL6NJ_G0021666.1 mouse_genomes_project 14 46912558 46922663 + MGP_C57BL6NJ_P0039649 Rnase4 protein_coding protein_coding MGP_C57BL6NJ_T0039339.1 MGP_C57BL6NJ_G0021548.1 mouse_genomes_project 14 28441678 28496999 - MGP_C57BL6NJ_P0039339 A630023A22Rik protein_coding protein_coding MGP_C57BL6NJ_T0038997.1 MGP_C57BL6NJ_G0021459.1 mouse_genomes_project 14 19910606 19938484 + protein_coding processed_transcript MGP_C57BL6NJ_T0039001.1 MGP_C57BL6NJ_G0021459.1 mouse_genomes_project 14 19917031 19939890 + MGP_C57BL6NJ_P0039001 protein_coding protein_coding MGP_C57BL6NJ_T0039003.1 MGP_C57BL6NJ_G0021459.1 mouse_genomes_project 14 19935341 19938765 + protein_coding retained_intron MGP_C57BL6NJ_T0039004.1 MGP_C57BL6NJ_G0021459.1 mouse_genomes_project 14 19938201 19938681 + protein_coding retained_intron MGP_C57BL6NJ_T0039588.1 MGP_C57BL6NJ_G0021633.1 mouse_genomes_project 14 46069094 46070127 - MGP_C57BL6NJ_P0039588 Olfr734 protein_coding protein_coding MGP_C57BL6NJ_T0039377.1 MGP_C57BL6NJ_G0021565.1 mouse_genomes_project 14 30331070 30333477 - MGP_C57BL6NJ_P0039377 4930596D02Rik protein_coding protein_coding MGP_C57BL6NJ_T0011638.1 MGP_C57BL6NJ_G0009723.1 mouse_genomes_project 14 58787197 58787453 + Gm27928 misc_RNA misc_RNA MGP_C57BL6NJ_T0040076.1 MGP_C57BL6NJ_G0021771.1 mouse_genomes_project 14 52305681 52308202 + MGP_C57BL6NJ_P0040076 Ltb4r1 protein_coding protein_coding MGP_C57BL6NJ_T0101213.1 MGP_C57BL6NJ_G0039259.1 mouse_genomes_project 14 25143356 25143432 - Snord19 snoRNA snoRNA MGP_C57BL6NJ_T0040200.1 MGP_C57BL6NJ_G0021828.1 mouse_genomes_project 14 56413407 56543067 + MGP_C57BL6NJ_P0040200 Cab39l protein_coding protein_coding MGP_C57BL6NJ_T0017869.1 MGP_C57BL6NJ_G0015668.1 mouse_genomes_project 14 64986709 64996193 - Gm10860 processed_transcript processed_transcript MGP_C57BL6NJ_T0040265.1 MGP_C57BL6NJ_G0021858.1 mouse_genomes_project 14 60263898 60267641 - MGP_C57BL6NJ_P0040265 Defb30 protein_coding protein_coding MGP_C57BL6NJ_T0040266.1 MGP_C57BL6NJ_G0021858.1 mouse_genomes_project 14 60264280 60279772 - MGP_C57BL6NJ_P0040266 Defb30 protein_coding protein_coding MGP_C57BL6NJ_T0040267.1 MGP_C57BL6NJ_G0021858.1 mouse_genomes_project 14 60265605 60279777 - MGP_C57BL6NJ_P0040267 Defb30 protein_coding protein_coding MGP_C57BL6NJ_T0040268.1 MGP_C57BL6NJ_G0021858.1 mouse_genomes_project 14 60265691 60267654 - MGP_C57BL6NJ_P0040268 Defb30 protein_coding protein_coding MGP_C57BL6NJ_T0040697.1 MGP_C57BL6NJ_G0022022.1 mouse_genomes_project 14 99490677 99505392 + MGP_C57BL6NJ_P0040697 Klf5 protein_coding protein_coding MGP_C57BL6NJ_T0039420.1 MGP_C57BL6NJ_G0021583.1 mouse_genomes_project 14 36204672 36217626 - MGP_C57BL6NJ_P0039420 Sftpd protein_coding protein_coding MGP_C57BL6NJ_T0040105.1 MGP_C57BL6NJ_G0021794.1 mouse_genomes_project 14 52967643 52991113 + MGP_C57BL6NJ_P0040105 Atp12a protein_coding protein_coding MGP_C57BL6NJ_T0013345.1 MGP_C57BL6NJ_G0011390.1 mouse_genomes_project 14 72570798 72584562 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040773.1 MGP_C57BL6NJ_G0022045.1 mouse_genomes_project 14 109997394 110001643 - MGP_C57BL6NJ_P0040773 Slitrk1 protein_coding protein_coding MGP_C57BL6NJ_T0010210.1 MGP_C57BL6NJ_G0008295.1 mouse_genomes_project 14 65445934 65446044 - Mir6539 miRNA miRNA MGP_C57BL6NJ_T0040357.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63605336 63680033 - MGP_C57BL6NJ_P0040357 Ptk2b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040358.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63605338 63622339 - MGP_C57BL6NJ_P0040358 Ptk2b protein_coding protein_coding MGP_C57BL6NJ_T0040359.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63605338 63761934 - MGP_C57BL6NJ_P0040359 Ptk2b protein_coding protein_coding MGP_C57BL6NJ_T0040360.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63605343 63612757 - Ptk2b protein_coding retained_intron MGP_C57BL6NJ_T0040361.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63605920 63761864 - MGP_C57BL6NJ_P0040361 Ptk2b protein_coding protein_coding MGP_C57BL6NJ_T0040362.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63608357 63615985 - Ptk2b protein_coding retained_intron MGP_C57BL6NJ_T0040363.1 MGP_C57BL6NJ_G0021897.1 mouse_genomes_project 14 63624797 63761874 - Ptk2b protein_coding retained_intron MGP_C57BL6NJ_T0013356.1 MGP_C57BL6NJ_G0011401.1 mouse_genomes_project 14 100085813 100086110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039492.1 MGP_C57BL6NJ_G0021607.1 mouse_genomes_project 14 42855922 42868308 + MGP_C57BL6NJ_P0039492 Lgals3 protein_coding protein_coding MGP_C57BL6NJ_T0039493.1 MGP_C57BL6NJ_G0021607.1 mouse_genomes_project 14 42861712 42874050 + MGP_C57BL6NJ_P0039493 Lgals3 protein_coding protein_coding MGP_C57BL6NJ_T0039494.1 MGP_C57BL6NJ_G0021607.1 mouse_genomes_project 14 42861798 42873689 + MGP_C57BL6NJ_P0039494 Lgals3 protein_coding protein_coding MGP_C57BL6NJ_T0039495.1 MGP_C57BL6NJ_G0021607.1 mouse_genomes_project 14 42861815 42868207 + MGP_C57BL6NJ_P0039495 Lgals3 protein_coding protein_coding MGP_C57BL6NJ_T0039496.1 MGP_C57BL6NJ_G0021607.1 mouse_genomes_project 14 42861873 42873684 + MGP_C57BL6NJ_P0039496 Lgals3 protein_coding protein_coding MGP_C57BL6NJ_T0039046.1 MGP_C57BL6NJ_G0021471.1 mouse_genomes_project 14 20703191 20723781 + MGP_C57BL6NJ_P0039046 Asb14 protein_coding protein_coding MGP_C57BL6NJ_T0039047.1 MGP_C57BL6NJ_G0021471.1 mouse_genomes_project 14 20703236 20722940 + MGP_C57BL6NJ_P0039047 Asb14 protein_coding protein_coding MGP_C57BL6NJ_T0039048.1 MGP_C57BL6NJ_G0021471.1 mouse_genomes_project 14 20703246 20710993 + Asb14 protein_coding processed_transcript MGP_C57BL6NJ_T0039049.1 MGP_C57BL6NJ_G0021471.1 mouse_genomes_project 14 20703254 20713193 + MGP_C57BL6NJ_P0039049 Asb14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039050.1 MGP_C57BL6NJ_G0021471.1 mouse_genomes_project 14 20713142 20723782 + MGP_C57BL6NJ_P0039050 Asb14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040274.1 MGP_C57BL6NJ_G0021860.1 mouse_genomes_project 14 60369203 60392620 + MGP_C57BL6NJ_P0040274 Ctsb protein_coding protein_coding MGP_C57BL6NJ_T0039643.1 MGP_C57BL6NJ_G0021662.1 mouse_genomes_project 14 46860336 46861049 - MGP_C57BL6NJ_P0039643 Rnase11 protein_coding protein_coding MGP_C57BL6NJ_T0040211.1 MGP_C57BL6NJ_G0021832.1 mouse_genomes_project 14 57107196 57117864 + MGP_C57BL6NJ_P0040211 4930563I02Rik protein_coding protein_coding MGP_C57BL6NJ_T0040212.1 MGP_C57BL6NJ_G0021832.1 mouse_genomes_project 14 57107642 57117874 + MGP_C57BL6NJ_P0040212 4930563I02Rik protein_coding protein_coding MGP_C57BL6NJ_T0011636.1 MGP_C57BL6NJ_G0009721.1 mouse_genomes_project 14 58763383 58763468 + Gm27747 misc_RNA misc_RNA MGP_C57BL6NJ_T0003693.1 MGP_C57BL6NJ_G0003345.1 mouse_genomes_project 14 34555051 34556473 + antisense antisense MGP_C57BL6NJ_T0040815.1 MGP_C57BL6NJ_G0022064.1 mouse_genomes_project 14 122763679 122802329 + MGP_C57BL6NJ_P0040815 Rap2a protein_coding protein_coding MGP_C57BL6NJ_T0040816.1 MGP_C57BL6NJ_G0022064.1 mouse_genomes_project 14 122798735 122802329 + MGP_C57BL6NJ_P0040816 Rap2a protein_coding protein_coding MGP_C57BL6NJ_T0101214.1 MGP_C57BL6NJ_G0039260.1 mouse_genomes_project 14 26441429 26441626 - Gm23946 snoRNA snoRNA MGP_C57BL6NJ_T0040502.1 MGP_C57BL6NJ_G0021951.1 mouse_genomes_project 14 68209753 68215814 - MGP_C57BL6NJ_P0040502 Fgf17 protein_coding protein_coding MGP_C57BL6NJ_T0039852.1 MGP_C57BL6NJ_G0021715.1 mouse_genomes_project 14 50959184 50976201 - MGP_C57BL6NJ_P0039852 Haus4 protein_coding protein_coding MGP_C57BL6NJ_T0099935.1 MGP_C57BL6NJ_G0037981.1 mouse_genomes_project 14 92698974 92699134 - Gm23509 snRNA snRNA MGP_C57BL6NJ_T0039057.1 MGP_C57BL6NJ_G0021475.1 mouse_genomes_project 14 21087897 21265584 + MGP_C57BL6NJ_P0039057 Arhgef3 protein_coding protein_coding MGP_C57BL6NJ_T0039058.1 MGP_C57BL6NJ_G0021475.1 mouse_genomes_project 14 21195726 21265599 + MGP_C57BL6NJ_P0039058 Arhgef3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040852.1 MGP_C57BL6NJ_G0022081.1 mouse_genomes_project 14 125380061 125481704 - MGP_C57BL6NJ_P0040852 Ggact protein_coding protein_coding MGP_C57BL6NJ_T0040855.1 MGP_C57BL6NJ_G0022081.1 mouse_genomes_project 14 125456523 125481746 - MGP_C57BL6NJ_P0040855 Ggact protein_coding protein_coding MGP_C57BL6NJ_T0040856.1 MGP_C57BL6NJ_G0022081.1 mouse_genomes_project 14 125456534 125457371 - MGP_C57BL6NJ_P0040856 Ggact protein_coding protein_coding MGP_C57BL6NJ_T0040857.1 MGP_C57BL6NJ_G0022081.1 mouse_genomes_project 14 125457100 125482341 - MGP_C57BL6NJ_P0040857 Ggact protein_coding protein_coding MGP_C57BL6NJ_T0040858.1 MGP_C57BL6NJ_G0022081.1 mouse_genomes_project 14 125457149 125481669 - MGP_C57BL6NJ_P0040858 Ggact protein_coding protein_coding MGP_C57BL6NJ_T0040214.1 MGP_C57BL6NJ_G0021833.1 mouse_genomes_project 14 57244831 57284621 - MGP_C57BL6NJ_P0040214 Nupl1 protein_coding protein_coding MGP_C57BL6NJ_T0010205.1 MGP_C57BL6NJ_G0008290.1 mouse_genomes_project 14 61016168 61016247 + Mir598 miRNA miRNA MGP_C57BL6NJ_T0040522.1 MGP_C57BL6NJ_G0021957.1 mouse_genomes_project 14 70680078 70681305 - MGP_C57BL6NJ_P0040522 protein_coding protein_coding MGP_C57BL6NJ_T0040564.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72567145 72585686 + MGP_C57BL6NJ_P0040564 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040565.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72567151 72577431 + Esd protein_coding retained_intron MGP_C57BL6NJ_T0040566.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72567153 72574288 + Esd protein_coding processed_transcript MGP_C57BL6NJ_T0040567.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72567189 72580407 + MGP_C57BL6NJ_P0040567 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040568.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72567216 72584689 + MGP_C57BL6NJ_P0040568 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040569.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72570487 72580524 + MGP_C57BL6NJ_P0040569 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040570.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72570799 72584625 + MGP_C57BL6NJ_P0040570 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040571.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72570799 72584566 + MGP_C57BL6NJ_P0040571 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040572.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72573275 72578380 + Esd protein_coding retained_intron MGP_C57BL6NJ_T0040573.1 MGP_C57BL6NJ_G0021968.1 mouse_genomes_project 14 72573338 72584596 + MGP_C57BL6NJ_P0040573 Esd protein_coding protein_coding MGP_C57BL6NJ_T0040116.1 MGP_C57BL6NJ_G0021799.1 mouse_genomes_project 14 53352009 53414141 - MGP_C57BL6NJ_P0040116 Pspc1 protein_coding protein_coding MGP_C57BL6NJ_T0040117.1 MGP_C57BL6NJ_G0021799.1 mouse_genomes_project 14 53353554 53414141 - MGP_C57BL6NJ_P0040117 Pspc1 protein_coding protein_coding MGP_C57BL6NJ_T0040118.1 MGP_C57BL6NJ_G0021799.1 mouse_genomes_project 14 53379631 53392964 - Pspc1 protein_coding retained_intron MGP_C57BL6NJ_T0040119.1 MGP_C57BL6NJ_G0021799.1 mouse_genomes_project 14 53379954 53413752 - MGP_C57BL6NJ_P0040119 Pspc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003721.1 MGP_C57BL6NJ_G0003367.1 mouse_genomes_project 14 61414421 61417863 - Gm17116 antisense antisense MGP_C57BL6NJ_T0040057.1 MGP_C57BL6NJ_G0021761.1 mouse_genomes_project 14 52189082 52191704 - MGP_C57BL6NJ_P0040057 Mdp1 protein_coding protein_coding MGP_C57BL6NJ_T0040655.1 MGP_C57BL6NJ_G0022004.1 mouse_genomes_project 14 77776497 77884719 + MGP_C57BL6NJ_P0040655 Elf1 protein_coding protein_coding MGP_C57BL6NJ_T0040656.1 MGP_C57BL6NJ_G0022004.1 mouse_genomes_project 14 77813100 77884718 + MGP_C57BL6NJ_P0040656 Elf1 protein_coding protein_coding MGP_C57BL6NJ_T0039035.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20440951 20460610 + MGP_C57BL6NJ_P0039035 Arf4 protein_coding protein_coding MGP_C57BL6NJ_T0039036.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20441103 20460153 + MGP_C57BL6NJ_P0039036 Arf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039037.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20441130 20460160 + Arf4 protein_coding processed_transcript MGP_C57BL6NJ_T0039038.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20441224 20460166 + MGP_C57BL6NJ_P0039038 Arf4 protein_coding protein_coding MGP_C57BL6NJ_T0039039.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20456362 20457209 + Arf4 protein_coding retained_intron MGP_C57BL6NJ_T0039040.1 MGP_C57BL6NJ_G0021468.1 mouse_genomes_project 14 20456482 20468409 + MGP_C57BL6NJ_P0039040 Arf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039559.1 MGP_C57BL6NJ_G0021617.1 mouse_genomes_project 14 44836395 44856859 + MGP_C57BL6NJ_P0039559 Naa30 protein_coding protein_coding MGP_C57BL6NJ_T0039560.1 MGP_C57BL6NJ_G0021617.1 mouse_genomes_project 14 44836414 44853515 + MGP_C57BL6NJ_P0039560 Naa30 protein_coding protein_coding MGP_C57BL6NJ_T0039561.1 MGP_C57BL6NJ_G0021617.1 mouse_genomes_project 14 44841696 44855201 + Naa30 protein_coding retained_intron MGP_C57BL6NJ_T0039562.1 MGP_C57BL6NJ_G0021617.1 mouse_genomes_project 14 44842320 44854082 + Naa30 protein_coding retained_intron MGP_C57BL6NJ_T0006881.1 MGP_C57BL6NJ_G0005684.1 mouse_genomes_project 14 59964398 60042793 + 4931440J10Rik lincRNA lincRNA MGP_C57BL6NJ_T0040325.1 MGP_C57BL6NJ_G0021882.1 mouse_genomes_project 14 62643509 62692692 + MGP_C57BL6NJ_P0040325 Fbxo16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040326.1 MGP_C57BL6NJ_G0021882.1 mouse_genomes_project 14 62643522 62692768 + MGP_C57BL6NJ_P0040326 Fbxo16 protein_coding protein_coding MGP_C57BL6NJ_T0002636.1 MGP_C57BL6NJ_G0002521.1 mouse_genomes_project 14 50498772 50498781 + MGP_C57BL6NJ_P0002636 Trdd1 TR_D_gene TR_D_gene MGP_C57BL6NJ_T0002637.1 MGP_C57BL6NJ_G0002521.1 mouse_genomes_project 14 50498772 50498783 + Trdd1 TR_D_gene processed_transcript MGP_C57BL6NJ_T0003708.1 MGP_C57BL6NJ_G0003358.1 mouse_genomes_project 14 52094551 52106701 - Gm15932 antisense antisense MGP_C57BL6NJ_T0040335.1 MGP_C57BL6NJ_G0021888.1 mouse_genomes_project 14 63226226 63238212 + MGP_C57BL6NJ_P0040335 Pbk protein_coding protein_coding MGP_C57BL6NJ_T0040336.1 MGP_C57BL6NJ_G0021888.1 mouse_genomes_project 14 63226326 63233498 + Pbk protein_coding processed_transcript MGP_C57BL6NJ_T0040337.1 MGP_C57BL6NJ_G0021888.1 mouse_genomes_project 14 63226621 63234264 + MGP_C57BL6NJ_P0040337 Pbk protein_coding protein_coding MGP_C57BL6NJ_T0040731.1 MGP_C57BL6NJ_G0022030.1 mouse_genomes_project 14 103483391 103489448 - MGP_C57BL6NJ_P0040731 Kctd12 protein_coding protein_coding MGP_C57BL6NJ_T0040732.1 MGP_C57BL6NJ_G0022030.1 mouse_genomes_project 14 103484347 103488362 - Kctd12 protein_coding processed_transcript MGP_C57BL6NJ_T0040398.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65256139 65298309 - MGP_C57BL6NJ_P0040398 Cdca2 protein_coding protein_coding MGP_C57BL6NJ_T0040399.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65256163 65298078 - MGP_C57BL6NJ_P0040399 Cdca2 protein_coding protein_coding MGP_C57BL6NJ_T0040400.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65257604 65279202 - MGP_C57BL6NJ_P0040400 Cdca2 protein_coding protein_coding MGP_C57BL6NJ_T0040401.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65260109 65298078 - MGP_C57BL6NJ_P0040401 Cdca2 protein_coding protein_coding MGP_C57BL6NJ_T0040402.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65276596 65280449 - MGP_C57BL6NJ_P0040402 Cdca2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040403.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65281403 65297843 - Cdca2 protein_coding retained_intron MGP_C57BL6NJ_T0040404.1 MGP_C57BL6NJ_G0021908.1 mouse_genomes_project 14 65282739 65298149 - MGP_C57BL6NJ_P0040404 Cdca2 protein_coding protein_coding MGP_C57BL6NJ_T0040599.1 MGP_C57BL6NJ_G0021979.1 mouse_genomes_project 14 73703223 73729674 - MGP_C57BL6NJ_P0040599 Slc25a30 protein_coding protein_coding MGP_C57BL6NJ_T0098825.1 MGP_C57BL6NJ_G0036889.1 mouse_genomes_project 14 103485030 103489339 - pseudogene pseudogene MGP_C57BL6NJ_T0006857.1 MGP_C57BL6NJ_G0005666.1 mouse_genomes_project 14 44291753 44436359 + Otx2os1 lincRNA lincRNA MGP_C57BL6NJ_T0006858.1 MGP_C57BL6NJ_G0005666.1 mouse_genomes_project 14 44292624 44348939 + Otx2os1 lincRNA lincRNA MGP_C57BL6NJ_T0006859.1 MGP_C57BL6NJ_G0005666.1 mouse_genomes_project 14 44292727 44346907 + Otx2os1 lincRNA lincRNA MGP_C57BL6NJ_T0099949.1 MGP_C57BL6NJ_G0037995.1 mouse_genomes_project 14 113447191 113447283 - Gm22764 snRNA snRNA MGP_C57BL6NJ_T0102836.1 MGP_C57BL6NJ_G0040630.1 mouse_genomes_project 14 11898163 11898311 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002778.1 MGP_C57BL6NJ_G0002648.1 mouse_genomes_project 14 49890427 49891128 + MGP_C57BL6NJ_P0002778 Trav9n-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0003694.1 MGP_C57BL6NJ_G0003346.1 mouse_genomes_project 14 40250735 40288557 - Gm17173 antisense antisense MGP_C57BL6NJ_T0039660.1 MGP_C57BL6NJ_G0021675.1 mouse_genomes_project 14 47317881 47326616 + MGP_C57BL6NJ_P0039660 Vmn2r121 protein_coding protein_coding MGP_C57BL6NJ_T0002789.1 MGP_C57BL6NJ_G0002658.1 mouse_genomes_project 14 49992608 49993194 + MGP_C57BL6NJ_P0002789 Trav3n-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039118.1 MGP_C57BL6NJ_G0021493.1 mouse_genomes_project 14 24985158 24987510 + MGP_C57BL6NJ_P0039118 Mustn1 protein_coding protein_coding MGP_C57BL6NJ_T0102849.1 MGP_C57BL6NJ_G0040643.1 mouse_genomes_project 14 39073214 39073655 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0038825.1 MGP_C57BL6NJ_G0021414.1 mouse_genomes_project 14 13515023 13521413 - MGP_C57BL6NJ_P0038825 Kcnk16 protein_coding protein_coding MGP_C57BL6NJ_T0099547.1 MGP_C57BL6NJ_G0037597.1 mouse_genomes_project 14 65252985 65254915 - Gm20667 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0040090.1 MGP_C57BL6NJ_G0021779.1 mouse_genomes_project 14 52505786 52510135 - MGP_C57BL6NJ_P0040090 Cma1 protein_coding protein_coding MGP_C57BL6NJ_T0013312.1 MGP_C57BL6NJ_G0011357.1 mouse_genomes_project 14 41241043 41241510 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039468.1 MGP_C57BL6NJ_G0021600.1 mouse_genomes_project 14 42246480 42260534 - MGP_C57BL6NJ_P0039468 Gmfb protein_coding protein_coding MGP_C57BL6NJ_T0039469.1 MGP_C57BL6NJ_G0021600.1 mouse_genomes_project 14 42246480 42260534 - MGP_C57BL6NJ_P0039469 Gmfb protein_coding protein_coding MGP_C57BL6NJ_T0039470.1 MGP_C57BL6NJ_G0021600.1 mouse_genomes_project 14 42252593 42257907 - MGP_C57BL6NJ_P0039470 Gmfb protein_coding protein_coding MGP_C57BL6NJ_T0101210.1 MGP_C57BL6NJ_G0039256.1 mouse_genomes_project 14 21409548 21409646 - Gm25697 snoRNA snoRNA MGP_C57BL6NJ_T0002745.1 MGP_C57BL6NJ_G0002618.1 mouse_genomes_project 14 48813698 48814206 + MGP_C57BL6NJ_P0002745 Trav7d-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039745.1 MGP_C57BL6NJ_G0021692.1 mouse_genomes_project 14 48239670 48281619 - MGP_C57BL6NJ_P0039745 Supt16 protein_coding protein_coding MGP_C57BL6NJ_T0040433.1 MGP_C57BL6NJ_G0021925.1 mouse_genomes_project 14 67044331 67064069 + MGP_C57BL6NJ_P0040433 protein_coding protein_coding MGP_C57BL6NJ_T0001038.1 MGP_C57BL6NJ_G0000947.1 mouse_genomes_project 14 43274274 43276830 + TEC TEC MGP_C57BL6NJ_T0039421.1 MGP_C57BL6NJ_G0021584.1 mouse_genomes_project 14 39065424 39066042 + MGP_C57BL6NJ_P0039421 Ang5 protein_coding protein_coding MGP_C57BL6NJ_T0006818.1 MGP_C57BL6NJ_G0005640.1 mouse_genomes_project 14 1045573 1052562 + 4930455B14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006819.1 MGP_C57BL6NJ_G0005640.1 mouse_genomes_project 14 1045573 1052504 + 4930455B14Rik lincRNA lincRNA MGP_C57BL6NJ_T0040750.1 MGP_C57BL6NJ_G0022036.1 mouse_genomes_project 14 104202121 104255703 + MGP_C57BL6NJ_P0040750 Slain1 protein_coding protein_coding MGP_C57BL6NJ_T0040751.1 MGP_C57BL6NJ_G0022036.1 mouse_genomes_project 14 104202539 104255106 + MGP_C57BL6NJ_P0040751 Slain1 protein_coding protein_coding MGP_C57BL6NJ_T0040752.1 MGP_C57BL6NJ_G0022036.1 mouse_genomes_project 14 104207664 104239276 + MGP_C57BL6NJ_P0040752 Slain1 protein_coding protein_coding MGP_C57BL6NJ_T0040753.1 MGP_C57BL6NJ_G0022036.1 mouse_genomes_project 14 104216379 104255598 + MGP_C57BL6NJ_P0040753 Slain1 protein_coding protein_coding MGP_C57BL6NJ_T0013363.1 MGP_C57BL6NJ_G0011408.1 mouse_genomes_project 14 117370190 117370790 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039646.1 MGP_C57BL6NJ_G0021665.1 mouse_genomes_project 14 46906076 46918559 + MGP_C57BL6NJ_P0039646 Ang protein_coding protein_coding MGP_C57BL6NJ_T0039648.1 MGP_C57BL6NJ_G0021665.1 mouse_genomes_project 14 46912558 46918559 + MGP_C57BL6NJ_P0039648 Ang protein_coding protein_coding MGP_C57BL6NJ_T0040201.1 MGP_C57BL6NJ_G0021829.1 mouse_genomes_project 14 56555109 56590385 - MGP_C57BL6NJ_P0040201 Cdadc1 protein_coding protein_coding MGP_C57BL6NJ_T0040202.1 MGP_C57BL6NJ_G0021829.1 mouse_genomes_project 14 56555109 56590385 - MGP_C57BL6NJ_P0040202 Cdadc1 protein_coding protein_coding MGP_C57BL6NJ_T0040203.1 MGP_C57BL6NJ_G0021829.1 mouse_genomes_project 14 56558711 56590385 - MGP_C57BL6NJ_P0040203 Cdadc1 protein_coding protein_coding MGP_C57BL6NJ_T0040204.1 MGP_C57BL6NJ_G0021829.1 mouse_genomes_project 14 56561949 56590385 - MGP_C57BL6NJ_P0040204 Cdadc1 protein_coding protein_coding MGP_C57BL6NJ_T0040084.1 MGP_C57BL6NJ_G0021775.1 mouse_genomes_project 14 52401968 52428826 + MGP_C57BL6NJ_P0040084 Nynrin protein_coding protein_coding MGP_C57BL6NJ_T0040085.1 MGP_C57BL6NJ_G0021775.1 mouse_genomes_project 14 52402047 52429270 + MGP_C57BL6NJ_P0040085 Nynrin protein_coding protein_coding MGP_C57BL6NJ_T0040096.1 MGP_C57BL6NJ_G0021785.1 mouse_genomes_project 14 52677484 52680535 - MGP_C57BL6NJ_P0040096 Mcpt8 protein_coding protein_coding MGP_C57BL6NJ_T0013341.1 MGP_C57BL6NJ_G0011386.1 mouse_genomes_project 14 62195555 62195874 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040498.1 MGP_C57BL6NJ_G0021950.1 mouse_genomes_project 14 68172063 68200930 - MGP_C57BL6NJ_P0040498 Dmtn protein_coding protein_coding MGP_C57BL6NJ_T0040499.1 MGP_C57BL6NJ_G0021950.1 mouse_genomes_project 14 68172064 68197841 - MGP_C57BL6NJ_P0040499 Dmtn protein_coding protein_coding MGP_C57BL6NJ_T0040500.1 MGP_C57BL6NJ_G0021950.1 mouse_genomes_project 14 68172064 68208207 - MGP_C57BL6NJ_P0040500 Dmtn protein_coding protein_coding MGP_C57BL6NJ_T0040501.1 MGP_C57BL6NJ_G0021950.1 mouse_genomes_project 14 68174620 68199767 - MGP_C57BL6NJ_P0040501 Dmtn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002741.1 MGP_C57BL6NJ_G0002615.1 mouse_genomes_project 14 48783646 48784158 + MGP_C57BL6NJ_P0002741 Trav7-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101231.1 MGP_C57BL6NJ_G0039277.1 mouse_genomes_project 14 62101755 62101890 + Gm26225 snoRNA snoRNA MGP_C57BL6NJ_T0003680.1 MGP_C57BL6NJ_G0003333.1 mouse_genomes_project 14 17000662 17004998 + Gm29626 antisense antisense MGP_C57BL6NJ_T0003681.1 MGP_C57BL6NJ_G0003333.1 mouse_genomes_project 14 17000679 17004996 + Gm29626 antisense antisense MGP_C57BL6NJ_T0002798.1 MGP_C57BL6NJ_G0002665.1 mouse_genomes_project 14 50191691 50192414 + MGP_C57BL6NJ_P0002798 Trav18 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002799.1 MGP_C57BL6NJ_G0002665.1 mouse_genomes_project 14 50191691 50192414 + MGP_C57BL6NJ_P0002799 Trav18 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039577.1 MGP_C57BL6NJ_G0021624.1 mouse_genomes_project 14 45797457 45805180 - MGP_C57BL6NJ_P0039577 Olfr725 protein_coding protein_coding MGP_C57BL6NJ_T0039578.1 MGP_C57BL6NJ_G0021624.1 mouse_genomes_project 14 45800315 45805209 - MGP_C57BL6NJ_P0039578 Olfr725 protein_coding protein_coding MGP_C57BL6NJ_T0013360.1 MGP_C57BL6NJ_G0011405.1 mouse_genomes_project 14 109759160 109759610 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040366.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827560 63840021 + MGP_C57BL6NJ_P0040366 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040367.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827568 63844945 + MGP_C57BL6NJ_P0040367 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040368.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827631 63838907 + Stmn4 protein_coding processed_transcript MGP_C57BL6NJ_T0040369.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827631 63839118 + Stmn4 protein_coding retained_intron MGP_C57BL6NJ_T0040370.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827637 63844939 + MGP_C57BL6NJ_P0040370 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040371.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827638 63844939 + MGP_C57BL6NJ_P0040371 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040372.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827639 63844913 + MGP_C57BL6NJ_P0040372 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040373.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827642 63840026 + MGP_C57BL6NJ_P0040373 Stmn4 protein_coding protein_coding MGP_C57BL6NJ_T0040374.1 MGP_C57BL6NJ_G0021899.1 mouse_genomes_project 14 63827645 63841367 + Stmn4 protein_coding retained_intron MGP_C57BL6NJ_T0006823.1 MGP_C57BL6NJ_G0005642.1 mouse_genomes_project 14 8288851 8303650 + B230110C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0006824.1 MGP_C57BL6NJ_G0005642.1 mouse_genomes_project 14 8289412 8303112 + B230110C06Rik lincRNA lincRNA MGP_C57BL6NJ_T0003701.1 MGP_C57BL6NJ_G0003352.1 mouse_genomes_project 14 50513574 50537915 - Gm43434 antisense antisense MGP_C57BL6NJ_T0011631.1 MGP_C57BL6NJ_G0009716.1 mouse_genomes_project 14 35271433 35271612 - Gm22726 misc_RNA misc_RNA MGP_C57BL6NJ_T0013321.1 MGP_C57BL6NJ_G0011366.1 mouse_genomes_project 14 48609184 48609360 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039919.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51430587 51463321 - MGP_C57BL6NJ_P0039919 Myh7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039920.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51430591 51464175 - MGP_C57BL6NJ_P0039920 Myh7 protein_coding protein_coding MGP_C57BL6NJ_T0039921.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51430670 51464167 - MGP_C57BL6NJ_P0039921 Myh7 protein_coding protein_coding MGP_C57BL6NJ_T0039922.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51433756 51463321 - MGP_C57BL6NJ_P0039922 Myh7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039924.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51444018 51454715 - Myh7 protein_coding retained_intron MGP_C57BL6NJ_T0039925.1 MGP_C57BL6NJ_G0021736.1 mouse_genomes_project 14 51462232 51464089 - MGP_C57BL6NJ_P0039925 Myh7 protein_coding protein_coding MGP_C57BL6NJ_T0039607.1 MGP_C57BL6NJ_G0021648.1 mouse_genomes_project 14 46493142 46501238 - MGP_C57BL6NJ_P0039607 Olfr749 protein_coding protein_coding MGP_C57BL6NJ_T0101262.1 MGP_C57BL6NJ_G0039308.1 mouse_genomes_project 14 120903749 120903880 + Gm22379 snoRNA snoRNA MGP_C57BL6NJ_T0039061.1 MGP_C57BL6NJ_G0021478.1 mouse_genomes_project 14 21495090 22394852 + MGP_C57BL6NJ_P0039061 Erc2 protein_coding protein_coding MGP_C57BL6NJ_T0039062.1 MGP_C57BL6NJ_G0021478.1 mouse_genomes_project 14 21518671 22230029 + MGP_C57BL6NJ_P0039062 Erc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039223.1 MGP_C57BL6NJ_G0021513.1 mouse_genomes_project 14 25640615 25658636 - MGP_C57BL6NJ_P0039223 Mettl6 protein_coding protein_coding MGP_C57BL6NJ_T0039280.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452697 26504566 + Parg protein_coding retained_intron MGP_C57BL6NJ_T0039281.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452697 26566122 + MGP_C57BL6NJ_P0039281 Parg protein_coding protein_coding MGP_C57BL6NJ_T0039282.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452697 26564235 + MGP_C57BL6NJ_P0039282 Parg protein_coding protein_coding MGP_C57BL6NJ_T0039283.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452697 26565792 + MGP_C57BL6NJ_P0039283 Parg protein_coding protein_coding MGP_C57BL6NJ_T0039284.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452719 26459982 + MGP_C57BL6NJ_P0039284 Parg protein_coding protein_coding MGP_C57BL6NJ_T0039285.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26452780 26565792 + MGP_C57BL6NJ_P0039285 Parg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039286.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26453184 26459933 + Parg protein_coding processed_transcript MGP_C57BL6NJ_T0039287.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26465147 26503731 + MGP_C57BL6NJ_P0039287 Parg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039288.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26503638 26530264 + Parg protein_coding processed_transcript MGP_C57BL6NJ_T0039289.1 MGP_C57BL6NJ_G0021526.1 mouse_genomes_project 14 26544309 26564916 + Parg protein_coding processed_transcript MGP_C57BL6NJ_T0101244.1 MGP_C57BL6NJ_G0039290.1 mouse_genomes_project 14 91884122 91884252 - Gm24127 snoRNA snoRNA MGP_C57BL6NJ_T0013282.1 MGP_C57BL6NJ_G0011327.1 mouse_genomes_project 14 5472118 5472454 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040321.1 MGP_C57BL6NJ_G0021879.1 mouse_genomes_project 14 62311463 62403469 + MGP_C57BL6NJ_P0040321 Ints9 protein_coding protein_coding MGP_C57BL6NJ_T0011637.1 MGP_C57BL6NJ_G0009722.1 mouse_genomes_project 14 58769445 58769582 + Gm27972 misc_RNA misc_RNA MGP_C57BL6NJ_T0040415.1 MGP_C57BL6NJ_G0021914.1 mouse_genomes_project 14 66132042 66173642 - MGP_C57BL6NJ_P0040415 Adam7 protein_coding protein_coding MGP_C57BL6NJ_T0040416.1 MGP_C57BL6NJ_G0021914.1 mouse_genomes_project 14 66132534 66148046 - Adam7 protein_coding retained_intron MGP_C57BL6NJ_T0099005.1 MGP_C57BL6NJ_G0037069.1 mouse_genomes_project 14 31444046 31444162 - n-R5s46 rRNA rRNA MGP_C57BL6NJ_T0039614.1 MGP_C57BL6NJ_G0021654.1 mouse_genomes_project 14 46674468 46675986 - MGP_C57BL6NJ_P0039614 A930018M24Rik protein_coding protein_coding MGP_C57BL6NJ_T0010189.1 MGP_C57BL6NJ_G0008274.1 mouse_genomes_project 14 40201416 40201485 - Mir327 miRNA miRNA MGP_C57BL6NJ_T0040776.1 MGP_C57BL6NJ_G0022048.1 mouse_genomes_project 14 114937176 114939134 + MGP_C57BL6NJ_P0040776 protein_coding protein_coding MGP_C57BL6NJ_T0102172.1 MGP_C57BL6NJ_G0040193.1 mouse_genomes_project 14 51512317 51530258 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102173.1 MGP_C57BL6NJ_G0040193.1 mouse_genomes_project 14 51529050 51530051 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0038950.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17599771 17724568 - MGP_C57BL6NJ_P0038950 Dlg5 protein_coding protein_coding MGP_C57BL6NJ_T0038951.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17599771 17612007 - MGP_C57BL6NJ_P0038951 Dlg5 protein_coding protein_coding MGP_C57BL6NJ_T0038952.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17599771 17646310 - MGP_C57BL6NJ_P0038952 Dlg5 protein_coding protein_coding MGP_C57BL6NJ_T0038953.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17599773 17724568 - MGP_C57BL6NJ_P0038953 Dlg5 protein_coding protein_coding MGP_C57BL6NJ_T0038954.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17610202 17618111 - MGP_C57BL6NJ_P0038954 Dlg5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038955.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17612099 17614583 - Dlg5 protein_coding retained_intron MGP_C57BL6NJ_T0038956.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17621872 17624818 - Dlg5 protein_coding retained_intron MGP_C57BL6NJ_T0038957.1 MGP_C57BL6NJ_G0021446.1 mouse_genomes_project 14 17662238 17723513 - MGP_C57BL6NJ_P0038957 Dlg5 protein_coding protein_coding MGP_C57BL6NJ_T0040041.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167271 52174558 - MGP_C57BL6NJ_P0040041 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040042.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167271 52175113 - MGP_C57BL6NJ_P0040042 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040043.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167274 52174622 - MGP_C57BL6NJ_P0040043 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040044.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167318 52174661 - MGP_C57BL6NJ_P0040044 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040045.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167322 52174668 - MGP_C57BL6NJ_P0040045 Tm9sf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040046.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52167366 52174647 - MGP_C57BL6NJ_P0040046 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040047.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52169139 52174830 - MGP_C57BL6NJ_P0040047 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040048.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52169607 52172367 - Tm9sf1 protein_coding processed_transcript MGP_C57BL6NJ_T0040049.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52171402 52174678 - Tm9sf1 protein_coding retained_intron MGP_C57BL6NJ_T0040050.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52171691 52174867 - Tm9sf1 protein_coding processed_transcript MGP_C57BL6NJ_T0040051.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52171750 52172906 - Tm9sf1 protein_coding retained_intron MGP_C57BL6NJ_T0040052.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52172724 52175078 - MGP_C57BL6NJ_P0040052 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0040053.1 MGP_C57BL6NJ_G0021759.1 mouse_genomes_project 14 52173890 52174640 - MGP_C57BL6NJ_P0040053 Tm9sf1 protein_coding protein_coding MGP_C57BL6NJ_T0039597.1 MGP_C57BL6NJ_G0021639.1 mouse_genomes_project 14 46219383 46220319 + MGP_C57BL6NJ_P0039597 Olfr740 protein_coding protein_coding MGP_C57BL6NJ_T0040823.1 MGP_C57BL6NJ_G0022068.1 mouse_genomes_project 14 123868083 123922506 - MGP_C57BL6NJ_P0040823 Slc15a1 protein_coding protein_coding MGP_C57BL6NJ_T0013286.1 MGP_C57BL6NJ_G0011331.1 mouse_genomes_project 14 11543786 11544884 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039563.1 MGP_C57BL6NJ_G0021618.1 mouse_genomes_project 14 44894692 44913767 - MGP_C57BL6NJ_P0039563 1700011H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0039564.1 MGP_C57BL6NJ_G0021618.1 mouse_genomes_project 14 44894926 44913736 - MGP_C57BL6NJ_P0039564 1700011H14Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039565.1 MGP_C57BL6NJ_G0021618.1 mouse_genomes_project 14 44901145 44913736 - MGP_C57BL6NJ_P0039565 1700011H14Rik protein_coding protein_coding MGP_C57BL6NJ_T0040241.1 MGP_C57BL6NJ_G0021844.1 mouse_genomes_project 14 58460561 58542766 - MGP_C57BL6NJ_P0040241 Kpna3 protein_coding protein_coding MGP_C57BL6NJ_T0040086.1 MGP_C57BL6NJ_G0021776.1 mouse_genomes_project 14 52438240 52443577 - MGP_C57BL6NJ_P0040086 Cbln3 protein_coding protein_coding MGP_C57BL6NJ_T0040087.1 MGP_C57BL6NJ_G0021776.1 mouse_genomes_project 14 52441381 52443553 - MGP_C57BL6NJ_P0040087 Cbln3 protein_coding protein_coding MGP_C57BL6NJ_T0040079.1 MGP_C57BL6NJ_G0021773.1 mouse_genomes_project 14 52324749 52328611 - MGP_C57BL6NJ_P0040079 Ripk3 protein_coding protein_coding MGP_C57BL6NJ_T0040080.1 MGP_C57BL6NJ_G0021773.1 mouse_genomes_project 14 52324749 52328611 - MGP_C57BL6NJ_P0040080 Ripk3 protein_coding protein_coding MGP_C57BL6NJ_T0040081.1 MGP_C57BL6NJ_G0021773.1 mouse_genomes_project 14 52324749 52328611 - MGP_C57BL6NJ_P0040081 Ripk3 protein_coding protein_coding MGP_C57BL6NJ_T0039484.1 MGP_C57BL6NJ_G0021604.1 mouse_genomes_project 14 42717902 42759503 - MGP_C57BL6NJ_P0039484 Wdhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039485.1 MGP_C57BL6NJ_G0021604.1 mouse_genomes_project 14 42717902 42759461 - MGP_C57BL6NJ_P0039485 Wdhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039486.1 MGP_C57BL6NJ_G0021604.1 mouse_genomes_project 14 42717903 42759528 - MGP_C57BL6NJ_P0039486 Wdhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039487.1 MGP_C57BL6NJ_G0021604.1 mouse_genomes_project 14 42738118 42759503 - MGP_C57BL6NJ_P0039487 Wdhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039488.1 MGP_C57BL6NJ_G0021604.1 mouse_genomes_project 14 42755139 42759478 - Wdhd1 protein_coding retained_intron MGP_C57BL6NJ_T0039912.1 MGP_C57BL6NJ_G0021734.1 mouse_genomes_project 14 51390099 51394056 + MGP_C57BL6NJ_P0039912 Cmtm5 protein_coding protein_coding MGP_C57BL6NJ_T0003692.1 MGP_C57BL6NJ_G0003344.1 mouse_genomes_project 14 34019526 34053401 + Gm20642 antisense antisense MGP_C57BL6NJ_T0038739.1 MGP_C57BL6NJ_G0021385.1 mouse_genomes_project 14 5941260 6273507 + MGP_C57BL6NJ_P0038739 Synpr protein_coding protein_coding MGP_C57BL6NJ_T0038740.1 MGP_C57BL6NJ_G0021385.1 mouse_genomes_project 14 6107489 6218494 + MGP_C57BL6NJ_P0038740 Synpr protein_coding protein_coding MGP_C57BL6NJ_T0038741.1 MGP_C57BL6NJ_G0021385.1 mouse_genomes_project 14 6107515 6222161 + Synpr protein_coding retained_intron MGP_C57BL6NJ_T0038742.1 MGP_C57BL6NJ_G0021385.1 mouse_genomes_project 14 6107588 6273507 + MGP_C57BL6NJ_P0038742 Synpr protein_coding protein_coding MGP_C57BL6NJ_T0038743.1 MGP_C57BL6NJ_G0021385.1 mouse_genomes_project 14 6107602 6268550 + Synpr protein_coding retained_intron MGP_C57BL6NJ_T0039335.1 MGP_C57BL6NJ_G0021544.1 mouse_genomes_project 14 28317416 28325365 + MGP_C57BL6NJ_P0039335 Gdf2 protein_coding protein_coding MGP_C57BL6NJ_T0010226.1 MGP_C57BL6NJ_G0008311.1 mouse_genomes_project 14 109365713 109365874 + Gm24818 miRNA miRNA MGP_C57BL6NJ_T0011626.1 MGP_C57BL6NJ_G0009711.1 mouse_genomes_project 14 14550065 14550301 + Gm26372 misc_RNA misc_RNA MGP_C57BL6NJ_T0038800.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11607310 11936073 - MGP_C57BL6NJ_P0038800 Ube2e2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038801.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11607312 11943197 - MGP_C57BL6NJ_P0038801 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038802.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11607776 11935921 - MGP_C57BL6NJ_P0038802 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038803.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11608029 11936065 - MGP_C57BL6NJ_P0038803 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038804.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11608098 11636815 - Ube2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0038805.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11608098 11936017 - MGP_C57BL6NJ_P0038805 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038806.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11624122 11709612 - Ube2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0038807.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11624122 11941035 - MGP_C57BL6NJ_P0038807 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038808.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11636707 11943139 - Ube2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0038809.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11667807 11943066 - MGP_C57BL6NJ_P0038809 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038810.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11667819 11943688 - MGP_C57BL6NJ_P0038810 Ube2e2 protein_coding protein_coding MGP_C57BL6NJ_T0038811.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11667877 11943066 - Ube2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0038812.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11675896 11943114 - Ube2e2 protein_coding processed_transcript MGP_C57BL6NJ_T0038813.1 MGP_C57BL6NJ_G0021407.1 mouse_genomes_project 14 11933990 11940900 - Ube2e2 protein_coding retained_intron MGP_C57BL6NJ_T0002868.1 MGP_C57BL6NJ_G0002722.1 mouse_genomes_project 14 50136194 50136465 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002749.1 MGP_C57BL6NJ_G0002622.1 mouse_genomes_project 14 48987532 48988062 + MGP_C57BL6NJ_P0002749 Trav7n-5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039583.1 MGP_C57BL6NJ_G0021628.1 mouse_genomes_project 14 45874733 45875705 - MGP_C57BL6NJ_P0039583 Olfr729 protein_coding protein_coding MGP_C57BL6NJ_T0040322.1 MGP_C57BL6NJ_G0021880.1 mouse_genomes_project 14 62419492 62470392 - MGP_C57BL6NJ_P0040322 Extl3 protein_coding protein_coding MGP_C57BL6NJ_T0039612.1 MGP_C57BL6NJ_G0021652.1 mouse_genomes_project 14 46601329 46651623 - MGP_C57BL6NJ_P0039612 Tep1 protein_coding protein_coding MGP_C57BL6NJ_T0040124.1 MGP_C57BL6NJ_G0021804.1 mouse_genomes_project 14 53735905 53761148 - MGP_C57BL6NJ_P0040124 Gja3 protein_coding protein_coding MGP_C57BL6NJ_T0040514.1 MGP_C57BL6NJ_G0021955.1 mouse_genomes_project 14 68487584 68580739 + MGP_C57BL6NJ_P0040514 Gfra2 protein_coding protein_coding MGP_C57BL6NJ_T0040670.1 MGP_C57BL6NJ_G0022010.1 mouse_genomes_project 14 83199540 83300420 + MGP_C57BL6NJ_P0040670 Pcdh17 protein_coding protein_coding MGP_C57BL6NJ_T0010211.1 MGP_C57BL6NJ_G0008296.1 mouse_genomes_project 14 67179919 67179992 + Mir6950 miRNA miRNA MGP_C57BL6NJ_T0102857.1 MGP_C57BL6NJ_G0040651.1 mouse_genomes_project 14 58264443 58288618 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003735.1 MGP_C57BL6NJ_G0003377.1 mouse_genomes_project 14 78086114 78088950 + Gm9748 antisense antisense MGP_C57BL6NJ_T0003736.1 MGP_C57BL6NJ_G0003377.1 mouse_genomes_project 14 78086188 78088898 + Gm9748 antisense antisense MGP_C57BL6NJ_T0010221.1 MGP_C57BL6NJ_G0008306.1 mouse_genomes_project 14 101013941 101014058 + Gm22401 miRNA miRNA MGP_C57BL6NJ_T0038785.1 MGP_C57BL6NJ_G0021403.1 mouse_genomes_project 14 11201478 11230480 - Nr1d2 protein_coding retained_intron MGP_C57BL6NJ_T0038786.1 MGP_C57BL6NJ_G0021403.1 mouse_genomes_project 14 11201669 11230275 - MGP_C57BL6NJ_P0038786 Nr1d2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101212.1 MGP_C57BL6NJ_G0039258.1 mouse_genomes_project 14 25142298 25142377 - Gm24916 snoRNA snoRNA MGP_C57BL6NJ_T0013361.1 MGP_C57BL6NJ_G0011406.1 mouse_genomes_project 14 114028640 114029120 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001045.1 MGP_C57BL6NJ_G0000954.1 mouse_genomes_project 14 58788030 58790942 - TEC TEC MGP_C57BL6NJ_T0010218.1 MGP_C57BL6NJ_G0008303.1 mouse_genomes_project 14 78048461 78048559 + Mir759 miRNA miRNA MGP_C57BL6NJ_T0040191.1 MGP_C57BL6NJ_G0021824.1 mouse_genomes_project 14 56179995 56205497 - MGP_C57BL6NJ_P0040191 Phf11b protein_coding protein_coding MGP_C57BL6NJ_T0002666.1 MGP_C57BL6NJ_G0002546.1 mouse_genomes_project 14 50571781 50571842 + MGP_C57BL6NJ_P0002666 Traj40 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040107.1 MGP_C57BL6NJ_G0021796.1 mouse_genomes_project 14 53146089 53192990 - MGP_C57BL6NJ_P0040107 Cenpj protein_coding protein_coding MGP_C57BL6NJ_T0040108.1 MGP_C57BL6NJ_G0021796.1 mouse_genomes_project 14 53146247 53186388 - MGP_C57BL6NJ_P0040108 Cenpj protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099012.1 MGP_C57BL6NJ_G0037076.1 mouse_genomes_project 14 87149766 87149866 + Gm26405 rRNA rRNA MGP_C57BL6NJ_T0039436.1 MGP_C57BL6NJ_G0021589.1 mouse_genomes_project 14 40523941 40528396 + Gpr137c protein_coding processed_transcript MGP_C57BL6NJ_T0039437.1 MGP_C57BL6NJ_G0021589.1 mouse_genomes_project 14 40524215 40596501 + MGP_C57BL6NJ_P0039437 Gpr137c protein_coding protein_coding MGP_C57BL6NJ_T0039438.1 MGP_C57BL6NJ_G0021589.1 mouse_genomes_project 14 40578973 40594524 + Gpr137c protein_coding retained_intron MGP_C57BL6NJ_T0039345.1 MGP_C57BL6NJ_G0021553.1 mouse_genomes_project 14 28621247 28624024 + Syt15 protein_coding retained_intron MGP_C57BL6NJ_T0039346.1 MGP_C57BL6NJ_G0021553.1 mouse_genomes_project 14 28621698 28629400 + MGP_C57BL6NJ_P0039346 Syt15 protein_coding protein_coding MGP_C57BL6NJ_T0039347.1 MGP_C57BL6NJ_G0021553.1 mouse_genomes_project 14 28621699 28632081 + MGP_C57BL6NJ_P0039347 Syt15 protein_coding protein_coding MGP_C57BL6NJ_T0002662.1 MGP_C57BL6NJ_G0002542.1 mouse_genomes_project 14 50567572 50567633 + MGP_C57BL6NJ_P0002662 Traj44 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0010186.1 MGP_C57BL6NJ_G0008271.1 mouse_genomes_project 14 24012027 24012092 + Mir6947 miRNA miRNA MGP_C57BL6NJ_T0101223.1 MGP_C57BL6NJ_G0039269.1 mouse_genomes_project 14 51656340 51656472 - Gm23596 snoRNA snoRNA MGP_C57BL6NJ_T0002866.1 MGP_C57BL6NJ_G0002720.1 mouse_genomes_project 14 50117635 50117802 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002685.1 MGP_C57BL6NJ_G0002565.1 mouse_genomes_project 14 50593232 50593290 + MGP_C57BL6NJ_P0002685 Traj20 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039856.1 MGP_C57BL6NJ_G0021719.1 mouse_genomes_project 14 51058163 51069928 - MGP_C57BL6NJ_P0039856 Cdh24 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002722.1 MGP_C57BL6NJ_G0002600.1 mouse_genomes_project 14 50598871 50598905 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0102846.1 MGP_C57BL6NJ_G0040640.1 mouse_genomes_project 14 39005241 39005674 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006849.1 MGP_C57BL6NJ_G0005659.1 mouse_genomes_project 14 34555051 34556473 + lincRNA lincRNA MGP_C57BL6NJ_T0040330.1 MGP_C57BL6NJ_G0021886.1 mouse_genomes_project 14 62989429 63046348 + MGP_C57BL6NJ_P0040330 Nuggc protein_coding protein_coding MGP_C57BL6NJ_T0040331.1 MGP_C57BL6NJ_G0021886.1 mouse_genomes_project 14 62999075 63046261 + MGP_C57BL6NJ_P0040331 Nuggc protein_coding protein_coding MGP_C57BL6NJ_T0006875.1 MGP_C57BL6NJ_G0005679.1 mouse_genomes_project 14 58746060 58747472 - Gm27010 lincRNA lincRNA MGP_C57BL6NJ_T0039290.1 MGP_C57BL6NJ_G0021527.1 mouse_genomes_project 14 26590504 26616394 + MGP_C57BL6NJ_P0039290 Ogdhl protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039291.1 MGP_C57BL6NJ_G0021527.1 mouse_genomes_project 14 26590517 26616062 + MGP_C57BL6NJ_P0039291 Ogdhl protein_coding protein_coding MGP_C57BL6NJ_T0017842.1 MGP_C57BL6NJ_G0015660.1 mouse_genomes_project 14 15175503 15178960 + A430057M04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017843.1 MGP_C57BL6NJ_G0015660.1 mouse_genomes_project 14 15176372 15184852 + A430057M04Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002674.1 MGP_C57BL6NJ_G0002554.1 mouse_genomes_project 14 50581725 50581782 + MGP_C57BL6NJ_P0002674 Traj31 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0102840.1 MGP_C57BL6NJ_G0040634.1 mouse_genomes_project 14 19819249 19828298 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040605.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74443535 74544233 + MGP_C57BL6NJ_P0040605 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040606.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74444161 74544233 + MGP_C57BL6NJ_P0040606 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040607.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74444688 74445218 + Tsc22d1 protein_coding processed_transcript MGP_C57BL6NJ_T0040608.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74446928 74471325 + MGP_C57BL6NJ_P0040608 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040609.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74447222 74468696 + MGP_C57BL6NJ_P0040609 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040610.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74447225 74470037 + MGP_C57BL6NJ_P0040610 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040611.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74447402 74470109 + MGP_C57BL6NJ_P0040611 Tsc22d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040612.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74467462 74470079 + Tsc22d1 protein_coding processed_transcript MGP_C57BL6NJ_T0040613.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74468629 74470079 + Tsc22d1 protein_coding retained_intron MGP_C57BL6NJ_T0040614.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74509409 74543401 + MGP_C57BL6NJ_P0040614 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040615.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74523597 74543469 + MGP_C57BL6NJ_P0040615 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040616.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74524274 74543641 + MGP_C57BL6NJ_P0040616 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040617.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74540684 74544234 + MGP_C57BL6NJ_P0040617 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040618.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74540948 74544236 + MGP_C57BL6NJ_P0040618 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040619.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74541000 74542208 + MGP_C57BL6NJ_P0040619 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040620.1 MGP_C57BL6NJ_G0021985.1 mouse_genomes_project 14 74541568 74543473 + MGP_C57BL6NJ_P0040620 Tsc22d1 protein_coding protein_coding MGP_C57BL6NJ_T0040841.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125066587 125120144 + Pcca protein_coding retained_intron MGP_C57BL6NJ_T0040842.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125066594 125157491 + MGP_C57BL6NJ_P0040842 Pcca protein_coding protein_coding MGP_C57BL6NJ_T0040843.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125066602 125455608 + MGP_C57BL6NJ_P0040843 Pcca protein_coding protein_coding MGP_C57BL6NJ_T0040844.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125066608 125188581 + MGP_C57BL6NJ_P0040844 Pcca protein_coding protein_coding MGP_C57BL6NJ_T0040845.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125119850 125455492 + MGP_C57BL6NJ_P0040845 Pcca protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040846.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125139982 125205407 + Pcca protein_coding processed_transcript MGP_C57BL6NJ_T0040847.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125258663 125285714 + MGP_C57BL6NJ_P0040847 Pcca protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040848.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125258689 125455489 + MGP_C57BL6NJ_P0040848 Pcca protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040849.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125258753 125377055 + Pcca protein_coding processed_transcript MGP_C57BL6NJ_T0040850.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125285618 125377401 + Pcca protein_coding retained_intron MGP_C57BL6NJ_T0040851.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125352313 125455484 + MGP_C57BL6NJ_P0040851 Pcca protein_coding protein_coding MGP_C57BL6NJ_T0040853.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125441598 125456764 + Pcca protein_coding processed_transcript MGP_C57BL6NJ_T0040854.1 MGP_C57BL6NJ_G0022080.1 mouse_genomes_project 14 125452566 125455492 + Pcca protein_coding retained_intron MGP_C57BL6NJ_T0013302.1 MGP_C57BL6NJ_G0011347.1 mouse_genomes_project 14 24899907 24900689 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040427.1 MGP_C57BL6NJ_G0021922.1 mouse_genomes_project 14 66983215 66988850 - MGP_C57BL6NJ_P0040427 Synb protein_coding protein_coding MGP_C57BL6NJ_T0099010.1 MGP_C57BL6NJ_G0037074.1 mouse_genomes_project 14 75648328 75648438 + n-R5s48 rRNA rRNA MGP_C57BL6NJ_T0006878.1 MGP_C57BL6NJ_G0005682.1 mouse_genomes_project 14 59353836 59356274 - Gm26969 lincRNA lincRNA MGP_C57BL6NJ_T0040593.1 MGP_C57BL6NJ_G0021976.1 mouse_genomes_project 14 73511646 73521445 - MGP_C57BL6NJ_P0040593 Spert protein_coding protein_coding MGP_C57BL6NJ_T0040594.1 MGP_C57BL6NJ_G0021976.1 mouse_genomes_project 14 73511646 73522576 - MGP_C57BL6NJ_P0040594 Spert protein_coding protein_coding MGP_C57BL6NJ_T0040595.1 MGP_C57BL6NJ_G0021976.1 mouse_genomes_project 14 73511646 73522576 - MGP_C57BL6NJ_P0040595 Spert protein_coding protein_coding MGP_C57BL6NJ_T0040596.1 MGP_C57BL6NJ_G0021976.1 mouse_genomes_project 14 73511646 73521445 - MGP_C57BL6NJ_P0040596 Spert protein_coding protein_coding MGP_C57BL6NJ_T0017879.1 MGP_C57BL6NJ_G0015671.1 mouse_genomes_project 14 76236808 76257738 + Gm19301 processed_transcript processed_transcript MGP_C57BL6NJ_T0040091.1 MGP_C57BL6NJ_G0021780.1 mouse_genomes_project 14 52598796 52601224 + MGP_C57BL6NJ_P0040091 Mcpt1 protein_coding protein_coding MGP_C57BL6NJ_T0040410.1 MGP_C57BL6NJ_G0021910.1 mouse_genomes_project 14 65327696 65331903 + MGP_C57BL6NJ_P0040410 Gnrh1 protein_coding protein_coding MGP_C57BL6NJ_T0011629.1 MGP_C57BL6NJ_G0009714.1 mouse_genomes_project 14 26241184 26241281 + Gm26045 misc_RNA misc_RNA MGP_C57BL6NJ_T0010228.1 MGP_C57BL6NJ_G0008313.1 mouse_genomes_project 14 116827457 116827541 + Mir17 miRNA miRNA MGP_C57BL6NJ_T0010224.1 MGP_C57BL6NJ_G0008309.1 mouse_genomes_project 14 106313392 106313521 - Mir6390 miRNA miRNA MGP_C57BL6NJ_T0101249.1 MGP_C57BL6NJ_G0039295.1 mouse_genomes_project 14 97342091 97342229 - Gm23276 snoRNA snoRNA MGP_C57BL6NJ_T0099007.1 MGP_C57BL6NJ_G0037071.1 mouse_genomes_project 14 64084914 64085004 - Gm23899 rRNA rRNA MGP_C57BL6NJ_T0040771.1 MGP_C57BL6NJ_G0022044.1 mouse_genomes_project 14 106829998 106833073 + MGP_C57BL6NJ_P0040771 Trim52 protein_coding protein_coding MGP_C57BL6NJ_T0040772.1 MGP_C57BL6NJ_G0022044.1 mouse_genomes_project 14 106829999 106858472 + Trim52 protein_coding processed_transcript MGP_C57BL6NJ_T0039967.1 MGP_C57BL6NJ_G0021749.1 mouse_genomes_project 14 52087274 52087739 - MGP_C57BL6NJ_P0039967 A730061H03Rik protein_coding protein_coding MGP_C57BL6NJ_T0040600.1 MGP_C57BL6NJ_G0021980.1 mouse_genomes_project 14 73812645 73813283 + protein_coding retained_intron MGP_C57BL6NJ_T0040749.1 MGP_C57BL6NJ_G0022035.1 mouse_genomes_project 14 104069880 104170206 + MGP_C57BL6NJ_P0040749 Scel protein_coding protein_coding MGP_C57BL6NJ_T0039207.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25395248 25403743 + MGP_C57BL6NJ_P0039207 Bap1 protein_coding protein_coding MGP_C57BL6NJ_T0039208.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25395301 25396813 + Bap1 protein_coding retained_intron MGP_C57BL6NJ_T0039209.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25395309 25398000 + Bap1 protein_coding retained_intron MGP_C57BL6NJ_T0039210.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25395336 25403729 + Bap1 protein_coding retained_intron MGP_C57BL6NJ_T0039211.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25395378 25398936 + MGP_C57BL6NJ_P0039211 Bap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039212.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25400067 25402323 + MGP_C57BL6NJ_P0039212 Bap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039213.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25400337 25401440 + Bap1 protein_coding retained_intron MGP_C57BL6NJ_T0039214.1 MGP_C57BL6NJ_G0021509.1 mouse_genomes_project 14 25401289 25402687 + Bap1 protein_coding retained_intron MGP_C57BL6NJ_T0039069.1 MGP_C57BL6NJ_G0021481.1 mouse_genomes_project 14 22981097 22996533 + MGP_C57BL6NJ_P0039069 Lrtm1 protein_coding protein_coding MGP_C57BL6NJ_T0003733.1 MGP_C57BL6NJ_G0003375.1 mouse_genomes_project 14 73082360 73084559 - Gm15629 antisense antisense MGP_C57BL6NJ_T0002678.1 MGP_C57BL6NJ_G0002558.1 mouse_genomes_project 14 50586106 50586165 + MGP_C57BL6NJ_P0002678 Traj27 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002693.1 MGP_C57BL6NJ_G0002573.1 mouse_genomes_project 14 50600899 50600958 + MGP_C57BL6NJ_P0002693 Traj11 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0013352.1 MGP_C57BL6NJ_G0011397.1 mouse_genomes_project 14 98848789 98849729 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010212.1 MGP_C57BL6NJ_G0008297.1 mouse_genomes_project 14 67848252 67848338 - Gm44340 miRNA miRNA MGP_C57BL6NJ_T0039100.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736205 24779956 + MGP_C57BL6NJ_P0039100 Rft1 protein_coding protein_coding MGP_C57BL6NJ_T0039101.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736220 24743332 + Rft1 protein_coding processed_transcript MGP_C57BL6NJ_T0039102.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736228 24746342 + Rft1 protein_coding processed_transcript MGP_C57BL6NJ_T0039103.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736232 24747515 + Rft1 protein_coding retained_intron MGP_C57BL6NJ_T0039104.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736252 24779956 + MGP_C57BL6NJ_P0039104 Rft1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039105.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24736252 24779956 + MGP_C57BL6NJ_P0039105 Rft1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039106.1 MGP_C57BL6NJ_G0021490.1 mouse_genomes_project 14 24765378 24778470 + Rft1 protein_coding processed_transcript MGP_C57BL6NJ_T0101207.1 MGP_C57BL6NJ_G0039253.1 mouse_genomes_project 14 11863295 11863430 + Gm22499 snoRNA snoRNA MGP_C57BL6NJ_T0039205.1 MGP_C57BL6NJ_G0021507.1 mouse_genomes_project 14 25360962 25374139 + MGP_C57BL6NJ_P0039205 Sema3g protein_coding protein_coding MGP_C57BL6NJ_T0040098.1 MGP_C57BL6NJ_G0021787.1 mouse_genomes_project 14 52710207 52713212 - MGP_C57BL6NJ_P0040098 Gzme protein_coding protein_coding MGP_C57BL6NJ_T0002863.1 MGP_C57BL6NJ_G0002717.1 mouse_genomes_project 14 49662782 49663061 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0040523.1 MGP_C57BL6NJ_G0021958.1 mouse_genomes_project 14 70680078 70681259 - MGP_C57BL6NJ_P0040523 protein_coding protein_coding MGP_C57BL6NJ_T0039888.1 MGP_C57BL6NJ_G0021726.1 mouse_genomes_project 14 51294059 51301814 - MGP_C57BL6NJ_P0039888 Homez protein_coding protein_coding MGP_C57BL6NJ_T0039889.1 MGP_C57BL6NJ_G0021726.1 mouse_genomes_project 14 51295110 51307961 - MGP_C57BL6NJ_P0039889 Homez protein_coding protein_coding MGP_C57BL6NJ_T0039890.1 MGP_C57BL6NJ_G0021726.1 mouse_genomes_project 14 51296874 51298520 - MGP_C57BL6NJ_P0039890 Homez protein_coding protein_coding MGP_C57BL6NJ_T0039891.1 MGP_C57BL6NJ_G0021726.1 mouse_genomes_project 14 51299231 51314638 - MGP_C57BL6NJ_P0039891 Homez protein_coding protein_coding MGP_C57BL6NJ_T0038756.1 MGP_C57BL6NJ_G0021393.1 mouse_genomes_project 14 7059335 7068331 + MGP_C57BL6NJ_P0038756 Il3ra protein_coding protein_coding MGP_C57BL6NJ_T0040551.1 MGP_C57BL6NJ_G0021962.1 mouse_genomes_project 14 70968073 70973473 + MGP_C57BL6NJ_P0040551 Lpar6 protein_coding protein_coding MGP_C57BL6NJ_T0040824.1 MGP_C57BL6NJ_G0022069.1 mouse_genomes_project 14 123963017 124135071 - MGP_C57BL6NJ_P0040824 Dock9 protein_coding protein_coding MGP_C57BL6NJ_T0040825.1 MGP_C57BL6NJ_G0022069.1 mouse_genomes_project 14 123963017 124249276 - MGP_C57BL6NJ_P0040825 Dock9 protein_coding protein_coding MGP_C57BL6NJ_T0040826.1 MGP_C57BL6NJ_G0022069.1 mouse_genomes_project 14 123964481 124134967 - MGP_C57BL6NJ_P0040826 Dock9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002695.1 MGP_C57BL6NJ_G0002575.1 mouse_genomes_project 14 50605230 50605289 + MGP_C57BL6NJ_P0002695 Traj7 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002771.1 MGP_C57BL6NJ_G0002642.1 mouse_genomes_project 14 49778345 49778901 + MGP_C57BL6NJ_P0002771 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040574.1 MGP_C57BL6NJ_G0021969.1 mouse_genomes_project 14 72589479 72806515 - MGP_C57BL6NJ_P0040574 Lrch1 protein_coding protein_coding MGP_C57BL6NJ_T0040575.1 MGP_C57BL6NJ_G0021969.1 mouse_genomes_project 14 72603388 72806298 - MGP_C57BL6NJ_P0040575 Lrch1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006882.1 MGP_C57BL6NJ_G0005685.1 mouse_genomes_project 14 60049568 60050868 - Gm26536 lincRNA lincRNA MGP_C57BL6NJ_T0002796.1 MGP_C57BL6NJ_G0002664.1 mouse_genomes_project 14 50165756 50166233 + MGP_C57BL6NJ_P0002796 Trav17 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002797.1 MGP_C57BL6NJ_G0002664.1 mouse_genomes_project 14 50165756 50166233 + MGP_C57BL6NJ_P0002797 Trav17 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0099921.1 MGP_C57BL6NJ_G0037967.1 mouse_genomes_project 14 51008033 51008140 + Gm24705 snRNA snRNA MGP_C57BL6NJ_T0039224.1 MGP_C57BL6NJ_G0021514.1 mouse_genomes_project 14 25658684 25673464 + MGP_C57BL6NJ_P0039224 Eaf1 protein_coding protein_coding MGP_C57BL6NJ_T0039722.1 MGP_C57BL6NJ_G0021688.1 mouse_genomes_project 14 48064697 48067620 + MGP_C57BL6NJ_P0039722 Tmem253 protein_coding protein_coding MGP_C57BL6NJ_T0099941.1 MGP_C57BL6NJ_G0037987.1 mouse_genomes_project 14 100016056 100016242 - Gm22970 snRNA snRNA MGP_C57BL6NJ_T0039042.1 MGP_C57BL6NJ_G0021470.1 mouse_genomes_project 14 20495497 20622793 + MGP_C57BL6NJ_P0039042 Dnah12 protein_coding protein_coding MGP_C57BL6NJ_T0039043.1 MGP_C57BL6NJ_G0021470.1 mouse_genomes_project 14 20495669 20700271 + MGP_C57BL6NJ_P0039043 Dnah12 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039044.1 MGP_C57BL6NJ_G0021470.1 mouse_genomes_project 14 20568344 20571088 + MGP_C57BL6NJ_P0039044 Dnah12 protein_coding protein_coding MGP_C57BL6NJ_T0039045.1 MGP_C57BL6NJ_G0021470.1 mouse_genomes_project 14 20639969 20700340 + MGP_C57BL6NJ_P0039045 Dnah12 protein_coding protein_coding MGP_C57BL6NJ_T0038695.1 MGP_C57BL6NJ_G0021371.1 mouse_genomes_project 14 426974 438496 + MGP_C57BL6NJ_P0038695 protein_coding protein_coding MGP_C57BL6NJ_T0038696.1 MGP_C57BL6NJ_G0021371.1 mouse_genomes_project 14 436739 437216 + MGP_C57BL6NJ_P0038696 protein_coding protein_coding MGP_C57BL6NJ_T0040640.1 MGP_C57BL6NJ_G0021996.1 mouse_genomes_project 14 76764083 76932940 - MGP_C57BL6NJ_P0040640 Dgkh protein_coding protein_coding MGP_C57BL6NJ_T0040641.1 MGP_C57BL6NJ_G0021996.1 mouse_genomes_project 14 76764579 76960620 - MGP_C57BL6NJ_P0040641 Dgkh protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040421.1 MGP_C57BL6NJ_G0021918.1 mouse_genomes_project 14 66856208 66859913 + MGP_C57BL6NJ_P0040421 Nkx2-6 protein_coding protein_coding MGP_C57BL6NJ_T0038816.1 MGP_C57BL6NJ_G0021410.1 mouse_genomes_project 14 13007654 13021067 - MGP_C57BL6NJ_P0038816 2700060E02Rik protein_coding protein_coding MGP_C57BL6NJ_T0040632.1 MGP_C57BL6NJ_G0021992.1 mouse_genomes_project 14 76058098 76167760 + MGP_C57BL6NJ_P0040632 Epsti1 protein_coding protein_coding MGP_C57BL6NJ_T0040633.1 MGP_C57BL6NJ_G0021992.1 mouse_genomes_project 14 76058266 76124121 + MGP_C57BL6NJ_P0040633 Epsti1 protein_coding protein_coding MGP_C57BL6NJ_T0039304.1 MGP_C57BL6NJ_G0021537.1 mouse_genomes_project 14 27264469 27500054 - MGP_C57BL6NJ_P0039304 Wdfy4 protein_coding protein_coding MGP_C57BL6NJ_T0039305.1 MGP_C57BL6NJ_G0021537.1 mouse_genomes_project 14 27264492 27500054 - MGP_C57BL6NJ_P0039305 Wdfy4 protein_coding protein_coding MGP_C57BL6NJ_T0039306.1 MGP_C57BL6NJ_G0021537.1 mouse_genomes_project 14 27264860 27446900 - MGP_C57BL6NJ_P0039306 Wdfy4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039313.1 MGP_C57BL6NJ_G0021537.1 mouse_genomes_project 14 27327802 27333131 - MGP_C57BL6NJ_P0039313 Wdfy4 protein_coding protein_coding MGP_C57BL6NJ_T0039314.1 MGP_C57BL6NJ_G0021537.1 mouse_genomes_project 14 27474826 27500496 - MGP_C57BL6NJ_P0039314 Wdfy4 protein_coding protein_coding MGP_C57BL6NJ_T0038901.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056671 15064754 - MGP_C57BL6NJ_P0038901 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038902.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15071898 - MGP_C57BL6NJ_P0038902 Dusp13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038903.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15064797 - MGP_C57BL6NJ_P0038903 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038904.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15063679 - MGP_C57BL6NJ_P0038904 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038905.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15066157 - MGP_C57BL6NJ_P0038905 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038906.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15064783 - MGP_C57BL6NJ_P0038906 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038907.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056672 15071900 - MGP_C57BL6NJ_P0038907 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038908.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056675 15071920 - MGP_C57BL6NJ_P0038908 Dusp13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038909.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056866 15071898 - MGP_C57BL6NJ_P0038909 Dusp13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038910.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15056926 15071904 - MGP_C57BL6NJ_P0038910 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038911.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15063412 15071904 - Dusp13 protein_coding processed_transcript MGP_C57BL6NJ_T0038912.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15063421 15069763 - MGP_C57BL6NJ_P0038912 Dusp13 protein_coding protein_coding MGP_C57BL6NJ_T0038913.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15066789 15071916 - MGP_C57BL6NJ_P0038913 Dusp13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038914.1 MGP_C57BL6NJ_G0021439.1 mouse_genomes_project 14 15068151 15074459 - Dusp13 protein_coding processed_transcript MGP_C57BL6NJ_T0040450.1 MGP_C57BL6NJ_G0021932.1 mouse_genomes_project 14 67613920 67616633 + MGP_C57BL6NJ_P0040450 Egr3 protein_coding protein_coding MGP_C57BL6NJ_T0013311.1 MGP_C57BL6NJ_G0011356.1 mouse_genomes_project 14 41241039 41241510 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039302.1 MGP_C57BL6NJ_G0021535.1 mouse_genomes_project 14 27130143 27132971 + MGP_C57BL6NJ_P0039302 Fam170b protein_coding protein_coding MGP_C57BL6NJ_T0040790.1 MGP_C57BL6NJ_G0022056.1 mouse_genomes_project 14 120574582 120826573 - MGP_C57BL6NJ_P0040790 Abcc4 protein_coding protein_coding MGP_C57BL6NJ_T0040791.1 MGP_C57BL6NJ_G0022056.1 mouse_genomes_project 14 120574582 120826573 - MGP_C57BL6NJ_P0040791 Abcc4 protein_coding protein_coding MGP_C57BL6NJ_T0039119.1 MGP_C57BL6NJ_G0021494.1 mouse_genomes_project 14 24999051 25017913 + MGP_C57BL6NJ_P0039119 Itih4 protein_coding protein_coding MGP_C57BL6NJ_T0039120.1 MGP_C57BL6NJ_G0021494.1 mouse_genomes_project 14 24999077 25017776 + MGP_C57BL6NJ_P0039120 Itih4 protein_coding protein_coding MGP_C57BL6NJ_T0039121.1 MGP_C57BL6NJ_G0021494.1 mouse_genomes_project 14 24999077 25017880 + MGP_C57BL6NJ_P0039121 Itih4 protein_coding protein_coding MGP_C57BL6NJ_T0039122.1 MGP_C57BL6NJ_G0021494.1 mouse_genomes_project 14 24999096 25017778 + MGP_C57BL6NJ_P0039122 Itih4 protein_coding protein_coding MGP_C57BL6NJ_T0039123.1 MGP_C57BL6NJ_G0021494.1 mouse_genomes_project 14 25015092 25017781 + Itih4 protein_coding retained_intron MGP_C57BL6NJ_T0002755.1 MGP_C57BL6NJ_G0002628.1 mouse_genomes_project 14 49214720 49215294 + MGP_C57BL6NJ_P0002755 Trav8d-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0006883.1 MGP_C57BL6NJ_G0005686.1 mouse_genomes_project 14 61903852 61906404 + Mir124a-1hg lincRNA lincRNA MGP_C57BL6NJ_T0006884.1 MGP_C57BL6NJ_G0005686.1 mouse_genomes_project 14 61906342 61912362 + Mir124a-1hg lincRNA lincRNA MGP_C57BL6NJ_T0006885.1 MGP_C57BL6NJ_G0005686.1 mouse_genomes_project 14 61906770 61908878 + Mir124a-1hg lincRNA lincRNA MGP_C57BL6NJ_T0006886.1 MGP_C57BL6NJ_G0005686.1 mouse_genomes_project 14 61908096 61909093 + Mir124a-1hg lincRNA lincRNA MGP_C57BL6NJ_T0010202.1 MGP_C57BL6NJ_G0008287.1 mouse_genomes_project 14 58752124 58752208 - Mir15a miRNA miRNA MGP_C57BL6NJ_T0102419.1 MGP_C57BL6NJ_G0040334.1 mouse_genomes_project 14 67090208 67177942 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0040452.1 MGP_C57BL6NJ_G0021934.1 mouse_genomes_project 14 67676018 67693090 - MGP_C57BL6NJ_P0040452 Ccar2 protein_coding protein_coding MGP_C57BL6NJ_T0002667.1 MGP_C57BL6NJ_G0002547.1 mouse_genomes_project 14 50573822 50573885 + MGP_C57BL6NJ_P0002667 Traj39 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039610.1 MGP_C57BL6NJ_G0021650.1 mouse_genomes_project 14 46549607 46556087 - MGP_C57BL6NJ_P0039610 Ccnb1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0039505.1 MGP_C57BL6NJ_G0021609.1 mouse_genomes_project 14 42971527 43039813 + MGP_C57BL6NJ_P0039505 protein_coding protein_coding MGP_C57BL6NJ_T0039506.1 MGP_C57BL6NJ_G0021609.1 mouse_genomes_project 14 42971527 43039813 + MGP_C57BL6NJ_P0039506 protein_coding protein_coding MGP_C57BL6NJ_T0039507.1 MGP_C57BL6NJ_G0021609.1 mouse_genomes_project 14 42971527 43039813 + MGP_C57BL6NJ_P0039507 protein_coding protein_coding MGP_C57BL6NJ_T0039508.1 MGP_C57BL6NJ_G0021609.1 mouse_genomes_project 14 42971600 43039751 + MGP_C57BL6NJ_P0039508 protein_coding protein_coding MGP_C57BL6NJ_T0039509.1 MGP_C57BL6NJ_G0021609.1 mouse_genomes_project 14 43007320 43039806 + MGP_C57BL6NJ_P0039509 protein_coding protein_coding MGP_C57BL6NJ_T0040093.1 MGP_C57BL6NJ_G0021782.1 mouse_genomes_project 14 52629210 52631722 + MGP_C57BL6NJ_P0040093 Mcpt2 protein_coding protein_coding MGP_C57BL6NJ_T0039084.1 MGP_C57BL6NJ_G0021488.1 mouse_genomes_project 14 24618818 24619596 + Tkt protein_coding processed_transcript MGP_C57BL6NJ_T0039085.1 MGP_C57BL6NJ_G0021488.1 mouse_genomes_project 14 24619590 24644576 + MGP_C57BL6NJ_P0039085 Tkt protein_coding protein_coding MGP_C57BL6NJ_T0039086.1 MGP_C57BL6NJ_G0021488.1 mouse_genomes_project 14 24619640 24632583 + Tkt protein_coding retained_intron MGP_C57BL6NJ_T0039087.1 MGP_C57BL6NJ_G0021488.1 mouse_genomes_project 14 24619670 24630789 + MGP_C57BL6NJ_P0039087 Tkt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039088.1 MGP_C57BL6NJ_G0021488.1 mouse_genomes_project 14 24639558 24640874 + Tkt protein_coding retained_intron MGP_C57BL6NJ_T0040354.1 MGP_C57BL6NJ_G0021895.1 mouse_genomes_project 14 63530760 63574227 - MGP_C57BL6NJ_P0040354 Ephx2 protein_coding protein_coding MGP_C57BL6NJ_T0039926.1 MGP_C57BL6NJ_G0021738.1 mouse_genomes_project 14 51484932 51493604 + MGP_C57BL6NJ_P0039926 Ngdn protein_coding protein_coding MGP_C57BL6NJ_T0001057.1 MGP_C57BL6NJ_G0000966.1 mouse_genomes_project 14 92016920 92017291 + TEC TEC MGP_C57BL6NJ_T0040775.1 MGP_C57BL6NJ_G0022047.1 mouse_genomes_project 14 113135614 113144893 + MGP_C57BL6NJ_P0040775 Slitrk5 protein_coding protein_coding MGP_C57BL6NJ_T0039056.1 MGP_C57BL6NJ_G0021474.1 mouse_genomes_project 14 20867481 20938634 + MGP_C57BL6NJ_P0039056 Il17rd protein_coding protein_coding MGP_C57BL6NJ_T0003718.1 MGP_C57BL6NJ_G0003364.1 mouse_genomes_project 14 60768047 60774221 + Gm17232 antisense antisense MGP_C57BL6NJ_T0002738.1 MGP_C57BL6NJ_G0002612.1 mouse_genomes_project 14 48707759 48708308 + MGP_C57BL6NJ_P0002738 Trav3-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039368.1 MGP_C57BL6NJ_G0021562.1 mouse_genomes_project 14 29020082 29029619 - MGP_C57BL6NJ_P0039368 Opn4 protein_coding protein_coding MGP_C57BL6NJ_T0039369.1 MGP_C57BL6NJ_G0021562.1 mouse_genomes_project 14 29021807 29029619 - MGP_C57BL6NJ_P0039369 Opn4 protein_coding protein_coding MGP_C57BL6NJ_T0040447.1 MGP_C57BL6NJ_G0021929.1 mouse_genomes_project 14 67252474 67270642 + MGP_C57BL6NJ_P0040447 Tnfrsf10b protein_coding protein_coding MGP_C57BL6NJ_T0039598.1 MGP_C57BL6NJ_G0021640.1 mouse_genomes_project 14 46266107 46279805 + MGP_C57BL6NJ_P0039598 Olfr741 protein_coding protein_coding MGP_C57BL6NJ_T0039599.1 MGP_C57BL6NJ_G0021640.1 mouse_genomes_project 14 46278869 46279805 + MGP_C57BL6NJ_P0039599 Olfr741 protein_coding protein_coding MGP_C57BL6NJ_T0040127.1 MGP_C57BL6NJ_G0021807.1 mouse_genomes_project 14 53832651 53844268 - MGP_C57BL6NJ_P0040127 Gjb6 protein_coding protein_coding MGP_C57BL6NJ_T0040128.1 MGP_C57BL6NJ_G0021807.1 mouse_genomes_project 14 53833630 53843938 - MGP_C57BL6NJ_P0040128 Gjb6 protein_coding protein_coding MGP_C57BL6NJ_T0040129.1 MGP_C57BL6NJ_G0021807.1 mouse_genomes_project 14 53840185 53841408 - Gjb6 protein_coding processed_transcript MGP_C57BL6NJ_T0002652.1 MGP_C57BL6NJ_G0002534.1 mouse_genomes_project 14 50556123 50556189 + MGP_C57BL6NJ_P0002652 Traj53 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040193.1 MGP_C57BL6NJ_G0021826.1 mouse_genomes_project 14 56183517 56205497 - MGP_C57BL6NJ_P0040193 Gm6904 protein_coding protein_coding MGP_C57BL6NJ_T0006832.1 MGP_C57BL6NJ_G0005648.1 mouse_genomes_project 14 18391224 18395251 + Gm10398 lincRNA lincRNA MGP_C57BL6NJ_T0040714.1 MGP_C57BL6NJ_G0022027.1 mouse_genomes_project 14 102037940 102086827 + MGP_C57BL6NJ_P0040714 Uchl3 protein_coding protein_coding MGP_C57BL6NJ_T0040126.1 MGP_C57BL6NJ_G0021806.1 mouse_genomes_project 14 53820637 53824015 - MGP_C57BL6NJ_P0040126 Gm4491 protein_coding protein_coding MGP_C57BL6NJ_T0039537.1 MGP_C57BL6NJ_G0021612.1 mouse_genomes_project 14 43686030 43834597 + MGP_C57BL6NJ_P0039537 Peli2 protein_coding protein_coding MGP_C57BL6NJ_T0039246.1 MGP_C57BL6NJ_G0021518.1 mouse_genomes_project 14 25874753 25959181 - MGP_C57BL6NJ_P0039246 Ankrd28 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039247.1 MGP_C57BL6NJ_G0021518.1 mouse_genomes_project 14 25876004 26016466 - MGP_C57BL6NJ_P0039247 Ankrd28 protein_coding protein_coding MGP_C57BL6NJ_T0006867.1 MGP_C57BL6NJ_G0005672.1 mouse_genomes_project 14 48281881 48298224 + Gm26590 lincRNA lincRNA MGP_C57BL6NJ_T0101258.1 MGP_C57BL6NJ_G0039304.1 mouse_genomes_project 14 107540793 107540920 + Gm23437 snoRNA snoRNA MGP_C57BL6NJ_T0002864.1 MGP_C57BL6NJ_G0002718.1 mouse_genomes_project 14 49883863 49884357 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0039600.1 MGP_C57BL6NJ_G0021641.1 mouse_genomes_project 14 46307164 46308279 + MGP_C57BL6NJ_P0039600 Olfr742 protein_coding protein_coding MGP_C57BL6NJ_T0017837.1 MGP_C57BL6NJ_G0015659.1 mouse_genomes_project 14 51021 89024 + Gm16741 processed_transcript processed_transcript MGP_C57BL6NJ_T0039425.1 MGP_C57BL6NJ_G0021587.1 mouse_genomes_project 14 40268717 40285477 + MGP_C57BL6NJ_P0039425 Ptger2 protein_coding protein_coding MGP_C57BL6NJ_T0101204.1 MGP_C57BL6NJ_G0039250.1 mouse_genomes_project 14 2928036 2928236 + Gm22053 snoRNA snoRNA MGP_C57BL6NJ_T0101225.1 MGP_C57BL6NJ_G0039271.1 mouse_genomes_project 14 53482148 53482234 - Gm22498 snoRNA snoRNA MGP_C57BL6NJ_T0001061.1 MGP_C57BL6NJ_G0000970.1 mouse_genomes_project 14 118708799 118709714 + TEC TEC MGP_C57BL6NJ_T0010197.1 MGP_C57BL6NJ_G0008282.1 mouse_genomes_project 14 51435602 51435679 - Mir208b miRNA miRNA MGP_C57BL6NJ_T0040245.1 MGP_C57BL6NJ_G0021847.1 mouse_genomes_project 14 58721781 58730076 + MGP_C57BL6NJ_P0040245 Kcnrg protein_coding protein_coding MGP_C57BL6NJ_T0002638.1 MGP_C57BL6NJ_G0002522.1 mouse_genomes_project 14 50507530 50507546 + MGP_C57BL6NJ_P0002638 Trdd2 TR_D_gene TR_D_gene MGP_C57BL6NJ_T0040630.1 MGP_C57BL6NJ_G0021990.1 mouse_genomes_project 14 75929401 75933443 - MGP_C57BL6NJ_P0040630 Gm1587 protein_coding protein_coding MGP_C57BL6NJ_T0039413.1 MGP_C57BL6NJ_G0021579.1 mouse_genomes_project 14 36099165 36120988 + MGP_C57BL6NJ_P0039413 Dydc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039414.1 MGP_C57BL6NJ_G0021579.1 mouse_genomes_project 14 36099165 36120995 + MGP_C57BL6NJ_P0039414 Dydc1 protein_coding protein_coding MGP_C57BL6NJ_T0039415.1 MGP_C57BL6NJ_G0021579.1 mouse_genomes_project 14 36099194 36120991 + MGP_C57BL6NJ_P0039415 Dydc1 protein_coding protein_coding MGP_C57BL6NJ_T0002782.1 MGP_C57BL6NJ_G0002652.1 mouse_genomes_project 14 49935727 49936227 + MGP_C57BL6NJ_P0002782 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0038715.1 MGP_C57BL6NJ_G0021378.1 mouse_genomes_project 14 799667 1045424 - MGP_C57BL6NJ_P0038715 4930452B06Rik protein_coding protein_coding MGP_C57BL6NJ_T0013342.1 MGP_C57BL6NJ_G0011387.1 mouse_genomes_project 14 69465317 69466302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038832.1 MGP_C57BL6NJ_G0021418.1 mouse_genomes_project 14 13635019 13639292 - MGP_C57BL6NJ_P0038832 Dnajc9 protein_coding protein_coding MGP_C57BL6NJ_T0002858.1 MGP_C57BL6NJ_G0002712.1 mouse_genomes_project 14 48734301 48734799 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002788.1 MGP_C57BL6NJ_G0002657.1 mouse_genomes_project 14 49973819 49974410 + MGP_C57BL6NJ_P0002788 Trav15-2-dv6-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002748.1 MGP_C57BL6NJ_G0002621.1 mouse_genomes_project 14 48943983 48944555 + MGP_C57BL6NJ_P0002748 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0102174.1 MGP_C57BL6NJ_G0040194.1 mouse_genomes_project 14 55726323 55726806 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102175.1 MGP_C57BL6NJ_G0040194.1 mouse_genomes_project 14 55726727 55727719 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0040817.1 MGP_C57BL6NJ_G0022065.1 mouse_genomes_project 14 123240012 123279444 + MGP_C57BL6NJ_P0040817 Ipo5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002792.1 MGP_C57BL6NJ_G0002660.1 mouse_genomes_project 14 50087145 50087985 + MGP_C57BL6NJ_P0002792 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0001044.1 MGP_C57BL6NJ_G0000953.1 mouse_genomes_project 14 51575813 51576852 - TEC TEC MGP_C57BL6NJ_T0002646.1 MGP_C57BL6NJ_G0002530.1 mouse_genomes_project 14 50547725 50547789 + Traj59 TR_J_gene processed_transcript MGP_C57BL6NJ_T0002647.1 MGP_C57BL6NJ_G0002530.1 mouse_genomes_project 14 50547725 50547787 + MGP_C57BL6NJ_P0002647 Traj59 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040756.1 MGP_C57BL6NJ_G0022038.1 mouse_genomes_project 14 105102547 105109489 - MGP_C57BL6NJ_P0040756 Pou4f1 protein_coding protein_coding MGP_C57BL6NJ_T0040757.1 MGP_C57BL6NJ_G0022038.1 mouse_genomes_project 14 105104844 105106141 - Pou4f1 protein_coding processed_transcript MGP_C57BL6NJ_T0010229.1 MGP_C57BL6NJ_G0008314.1 mouse_genomes_project 14 116827637 116827733 + Mir18 miRNA miRNA MGP_C57BL6NJ_T0040689.1 MGP_C57BL6NJ_G0022016.1 mouse_genomes_project 14 96020186 96464812 - MGP_C57BL6NJ_P0040689 Klhl1 protein_coding protein_coding MGP_C57BL6NJ_T0013366.1 MGP_C57BL6NJ_G0011411.1 mouse_genomes_project 14 126576846 126577387 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102839.1 MGP_C57BL6NJ_G0040633.1 mouse_genomes_project 14 12846997 12851522 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040095.1 MGP_C57BL6NJ_G0021784.1 mouse_genomes_project 14 52662366 52664311 - MGP_C57BL6NJ_P0040095 Cma2 protein_coding protein_coding MGP_C57BL6NJ_T0038814.1 MGP_C57BL6NJ_G0021408.1 mouse_genomes_project 14 12601112 12601985 - MGP_C57BL6NJ_P0038814 Gm9637 protein_coding protein_coding MGP_C57BL6NJ_T0038868.1 MGP_C57BL6NJ_G0021431.1 mouse_genomes_project 14 13991474 14002051 - MGP_C57BL6NJ_P0038868 Ndst2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099934.1 MGP_C57BL6NJ_G0037980.1 mouse_genomes_project 14 88558954 88559068 + Gm25886 snRNA snRNA MGP_C57BL6NJ_T0101263.1 MGP_C57BL6NJ_G0039309.1 mouse_genomes_project 14 126521179 126521307 + Gm25272 snoRNA snoRNA MGP_C57BL6NJ_T0099011.1 MGP_C57BL6NJ_G0037075.1 mouse_genomes_project 14 76479228 76479343 - Gm26197 rRNA rRNA MGP_C57BL6NJ_T0011630.1 MGP_C57BL6NJ_G0009715.1 mouse_genomes_project 14 30081862 30082030 + Gm27617 misc_RNA misc_RNA MGP_C57BL6NJ_T0010187.1 MGP_C57BL6NJ_G0008272.1 mouse_genomes_project 14 24642002 24642062 + Mir3076 miRNA miRNA MGP_C57BL6NJ_T0002780.1 MGP_C57BL6NJ_G0002650.1 mouse_genomes_project 14 49923486 49924040 + MGP_C57BL6NJ_P0002780 Trav4-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0013317.1 MGP_C57BL6NJ_G0011362.1 mouse_genomes_project 14 46529592 46530088 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010216.1 MGP_C57BL6NJ_G0008301.1 mouse_genomes_project 14 76365115 76365221 - Mir1971 miRNA miRNA MGP_C57BL6NJ_T0017889.1 MGP_C57BL6NJ_G0015676.1 mouse_genomes_project 14 117615868 117712180 - Gm20713 processed_transcript processed_transcript MGP_C57BL6NJ_T0001048.1 MGP_C57BL6NJ_G0000957.1 mouse_genomes_project 14 62192310 62195715 - TEC TEC MGP_C57BL6NJ_T0039842.1 MGP_C57BL6NJ_G0021713.1 mouse_genomes_project 14 50882537 50886869 + MGP_C57BL6NJ_P0039842 Rem2 protein_coding protein_coding MGP_C57BL6NJ_T0039843.1 MGP_C57BL6NJ_G0021713.1 mouse_genomes_project 14 50882677 50884332 + Rem2 protein_coding retained_intron MGP_C57BL6NJ_T0039844.1 MGP_C57BL6NJ_G0021713.1 mouse_genomes_project 14 50882689 50886117 + MGP_C57BL6NJ_P0039844 Rem2 protein_coding protein_coding MGP_C57BL6NJ_T0039845.1 MGP_C57BL6NJ_G0021713.1 mouse_genomes_project 14 50883908 50885555 + MGP_C57BL6NJ_P0039845 Rem2 protein_coding protein_coding MGP_C57BL6NJ_T0002655.1 MGP_C57BL6NJ_G0002537.1 mouse_genomes_project 14 50562577 50562639 + MGP_C57BL6NJ_P0002655 Traj49 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0002656.1 MGP_C57BL6NJ_G0002537.1 mouse_genomes_project 14 50562577 50562636 + Traj49 TR_J_gene processed_transcript MGP_C57BL6NJ_T0099927.1 MGP_C57BL6NJ_G0037973.1 mouse_genomes_project 14 60341642 60341749 + Gm23629 snRNA snRNA MGP_C57BL6NJ_T0039910.1 MGP_C57BL6NJ_G0021732.1 mouse_genomes_project 14 51370253 51380479 - MGP_C57BL6NJ_P0039910 Efs protein_coding protein_coding MGP_C57BL6NJ_T0040831.1 MGP_C57BL6NJ_G0022074.1 mouse_genomes_project 14 124600647 124656142 + MGP_C57BL6NJ_P0040831 Tm9sf2 protein_coding protein_coding MGP_C57BL6NJ_T0040832.1 MGP_C57BL6NJ_G0022074.1 mouse_genomes_project 14 124600747 124634206 + MGP_C57BL6NJ_P0040832 Tm9sf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040833.1 MGP_C57BL6NJ_G0022074.1 mouse_genomes_project 14 124600877 124655254 + MGP_C57BL6NJ_P0040833 Tm9sf2 protein_coding protein_coding MGP_C57BL6NJ_T0040342.1 MGP_C57BL6NJ_G0021891.1 mouse_genomes_project 14 63353143 63388277 - MGP_C57BL6NJ_P0040342 Scara3 protein_coding protein_coding MGP_C57BL6NJ_T0038757.1 MGP_C57BL6NJ_G0021394.1 mouse_genomes_project 14 7138139 7139236 + MGP_C57BL6NJ_P0038757 Olfr721-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0038758.1 MGP_C57BL6NJ_G0021394.1 mouse_genomes_project 14 7138261 7139236 + MGP_C57BL6NJ_P0038758 Olfr721-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0003696.1 MGP_C57BL6NJ_G0003348.1 mouse_genomes_project 14 41798101 41801965 + antisense antisense MGP_C57BL6NJ_T0013308.1 MGP_C57BL6NJ_G0011353.1 mouse_genomes_project 14 40149196 40149980 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039461.1 MGP_C57BL6NJ_G0021597.1 mouse_genomes_project 14 41791347 41803352 - MGP_C57BL6NJ_P0039461 Bmp4 protein_coding protein_coding MGP_C57BL6NJ_T0039462.1 MGP_C57BL6NJ_G0021597.1 mouse_genomes_project 14 41791534 41803233 - MGP_C57BL6NJ_P0039462 Bmp4 protein_coding protein_coding MGP_C57BL6NJ_T0039463.1 MGP_C57BL6NJ_G0021597.1 mouse_genomes_project 14 41797578 41803218 - Bmp4 protein_coding retained_intron MGP_C57BL6NJ_T0039947.1 MGP_C57BL6NJ_G0021742.1 mouse_genomes_project 14 51596391 51606497 - MGP_C57BL6NJ_P0039947 Jph4 protein_coding protein_coding MGP_C57BL6NJ_T0039948.1 MGP_C57BL6NJ_G0021742.1 mouse_genomes_project 14 51596838 51605114 - MGP_C57BL6NJ_P0039948 Jph4 protein_coding protein_coding MGP_C57BL6NJ_T0039949.1 MGP_C57BL6NJ_G0021742.1 mouse_genomes_project 14 51599203 51600120 - Jph4 protein_coding retained_intron MGP_C57BL6NJ_T0039950.1 MGP_C57BL6NJ_G0021742.1 mouse_genomes_project 14 51601051 51606142 - Jph4 protein_coding retained_intron MGP_C57BL6NJ_T0039248.1 MGP_C57BL6NJ_G0021519.1 mouse_genomes_project 14 26248397 26285040 + MGP_C57BL6NJ_P0039248 Galnt15 protein_coding protein_coding MGP_C57BL6NJ_T0039249.1 MGP_C57BL6NJ_G0021519.1 mouse_genomes_project 14 26248818 26283070 + MGP_C57BL6NJ_P0039249 Galnt15 protein_coding protein_coding MGP_C57BL6NJ_T0003683.1 MGP_C57BL6NJ_G0003335.1 mouse_genomes_project 14 19380165 19393643 - Anxa11os antisense antisense MGP_C57BL6NJ_T0002677.1 MGP_C57BL6NJ_G0002557.1 mouse_genomes_project 14 50585464 50585529 + MGP_C57BL6NJ_P0002677 Traj28 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0001046.1 MGP_C57BL6NJ_G0000955.1 mouse_genomes_project 14 58798137 58802188 - TEC TEC MGP_C57BL6NJ_T0003685.1 MGP_C57BL6NJ_G0003337.1 mouse_genomes_project 14 20473332 20473830 + 9930004E17Rik antisense antisense MGP_C57BL6NJ_T0102171.1 MGP_C57BL6NJ_G0040192.1 mouse_genomes_project 14 47855291 47855951 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0039885.1 MGP_C57BL6NJ_G0021723.1 mouse_genomes_project 14 51119584 51124156 + MGP_C57BL6NJ_P0039885 1700123O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0040297.1 MGP_C57BL6NJ_G0021869.1 mouse_genomes_project 14 61153937 61213469 + MGP_C57BL6NJ_P0040297 Pinx1 protein_coding protein_coding MGP_C57BL6NJ_T0003699.1 MGP_C57BL6NJ_G0003351.1 mouse_genomes_project 14 50449308 50510633 - Gm42877 antisense antisense MGP_C57BL6NJ_T0003700.1 MGP_C57BL6NJ_G0003351.1 mouse_genomes_project 14 50489954 50510686 - Gm42877 antisense antisense MGP_C57BL6NJ_T0040236.1 MGP_C57BL6NJ_G0021841.1 mouse_genomes_project 14 58306273 58347933 - MGP_C57BL6NJ_P0040236 Sgcg protein_coding protein_coding MGP_C57BL6NJ_T0040237.1 MGP_C57BL6NJ_G0021841.1 mouse_genomes_project 14 58306658 58347867 - MGP_C57BL6NJ_P0040237 Sgcg protein_coding protein_coding MGP_C57BL6NJ_T0040238.1 MGP_C57BL6NJ_G0021841.1 mouse_genomes_project 14 58308030 58317655 - MGP_C57BL6NJ_P0040238 Sgcg protein_coding protein_coding MGP_C57BL6NJ_T0040137.1 MGP_C57BL6NJ_G0021811.1 mouse_genomes_project 14 54297265 54323641 - MGP_C57BL6NJ_P0040137 Eef1akmt1 protein_coding protein_coding MGP_C57BL6NJ_T0013351.1 MGP_C57BL6NJ_G0011396.1 mouse_genomes_project 14 98183156 98183654 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003664.1 MGP_C57BL6NJ_G0003325.1 mouse_genomes_project 14 3202282 3237144 + Fhitos antisense antisense MGP_C57BL6NJ_T0002724.1 MGP_C57BL6NJ_G0002602.1 mouse_genomes_project 14 50615094 50615123 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0002699.1 MGP_C57BL6NJ_G0002579.1 mouse_genomes_project 14 50613572 50613638 + MGP_C57BL6NJ_P0002699 Traj3 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0038772.1 MGP_C57BL6NJ_G0021399.1 mouse_genomes_project 14 9124745 9192481 + MGP_C57BL6NJ_P0038772 Ngly1 protein_coding protein_coding MGP_C57BL6NJ_T0038773.1 MGP_C57BL6NJ_G0021399.1 mouse_genomes_project 14 9124792 9159442 + Ngly1 protein_coding retained_intron MGP_C57BL6NJ_T0038774.1 MGP_C57BL6NJ_G0021399.1 mouse_genomes_project 14 9157119 9159565 + Ngly1 protein_coding retained_intron MGP_C57BL6NJ_T0039790.1 MGP_C57BL6NJ_G0021698.1 mouse_genomes_project 14 48450319 48457029 - MGP_C57BL6NJ_P0039790 protein_coding protein_coding MGP_C57BL6NJ_T0040690.1 MGP_C57BL6NJ_G0022017.1 mouse_genomes_project 14 97837456 98236212 - MGP_C57BL6NJ_P0040690 Dach1 protein_coding protein_coding MGP_C57BL6NJ_T0040691.1 MGP_C57BL6NJ_G0022017.1 mouse_genomes_project 14 97837456 98236212 - MGP_C57BL6NJ_P0040691 Dach1 protein_coding protein_coding MGP_C57BL6NJ_T0040692.1 MGP_C57BL6NJ_G0022017.1 mouse_genomes_project 14 97876463 98236460 - Dach1 protein_coding retained_intron MGP_C57BL6NJ_T0039356.1 MGP_C57BL6NJ_G0021558.1 mouse_genomes_project 14 28788446 28820177 + MGP_C57BL6NJ_P0039356 Mmrn2 protein_coding protein_coding MGP_C57BL6NJ_T0017870.1 MGP_C57BL6NJ_G0015669.1 mouse_genomes_project 14 70906515 70920008 - Gm17233 processed_transcript processed_transcript MGP_C57BL6NJ_T0010209.1 MGP_C57BL6NJ_G0008294.1 mouse_genomes_project 14 64821590 64821685 - Gm23178 miRNA miRNA MGP_C57BL6NJ_T0003697.1 MGP_C57BL6NJ_G0003349.1 mouse_genomes_project 14 42561658 42581521 - Gm10371 antisense antisense MGP_C57BL6NJ_T0039693.1 MGP_C57BL6NJ_G0021685.1 mouse_genomes_project 14 47960052 47960666 - MGP_C57BL6NJ_P0039693 Rnase13 protein_coding protein_coding MGP_C57BL6NJ_T0039332.1 MGP_C57BL6NJ_G0021541.1 mouse_genomes_project 14 27856928 27935571 + MGP_C57BL6NJ_P0039332 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0101257.1 MGP_C57BL6NJ_G0039303.1 mouse_genomes_project 14 107251192 107251299 - Gm24634 snoRNA snoRNA MGP_C57BL6NJ_T0040827.1 MGP_C57BL6NJ_G0022070.1 mouse_genomes_project 14 124350378 124497128 + MGP_C57BL6NJ_P0040827 Ubac2 protein_coding protein_coding MGP_C57BL6NJ_T0040811.1 MGP_C57BL6NJ_G0022061.1 mouse_genomes_project 14 121304092 122112669 + MGP_C57BL6NJ_P0040811 Hs6st3 protein_coding protein_coding MGP_C57BL6NJ_T0001055.1 MGP_C57BL6NJ_G0000964.1 mouse_genomes_project 14 86185131 86185504 - TEC TEC MGP_C57BL6NJ_T0038900.1 MGP_C57BL6NJ_G0021438.1 mouse_genomes_project 14 14995537 15033435 - MGP_C57BL6NJ_P0038900 Dupd1 protein_coding protein_coding MGP_C57BL6NJ_T0099003.1 MGP_C57BL6NJ_G0037067.1 mouse_genomes_project 14 5019738 5019848 - n-R5s45 rRNA rRNA MGP_C57BL6NJ_T0040604.1 MGP_C57BL6NJ_G0021984.1 mouse_genomes_project 14 74112885 74139374 + MGP_C57BL6NJ_P0040604 Nufip1 protein_coding protein_coding MGP_C57BL6NJ_T0002865.1 MGP_C57BL6NJ_G0002719.1 mouse_genomes_project 14 49918252 49918532 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002802.1 MGP_C57BL6NJ_G0002668.1 mouse_genomes_project 14 50245655 50246261 + MGP_C57BL6NJ_P0002802 Trdv1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002803.1 MGP_C57BL6NJ_G0002668.1 mouse_genomes_project 14 50245655 50246261 + MGP_C57BL6NJ_P0002803 Trdv1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002758.1 MGP_C57BL6NJ_G0002631.1 mouse_genomes_project 14 49312685 49313154 + MGP_C57BL6NJ_P0002758 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002663.1 MGP_C57BL6NJ_G0002543.1 mouse_genomes_project 14 50568624 50568681 + MGP_C57BL6NJ_P0002663 Traj43 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0038964.1 MGP_C57BL6NJ_G0021448.1 mouse_genomes_project 14 17963830 18002168 - MGP_C57BL6NJ_P0038964 Polr3a protein_coding protein_coding MGP_C57BL6NJ_T0039334.1 MGP_C57BL6NJ_G0021543.1 mouse_genomes_project 14 28299964 28311658 + MGP_C57BL6NJ_P0039334 Gdf10 protein_coding protein_coding MGP_C57BL6NJ_T0102853.1 MGP_C57BL6NJ_G0040647.1 mouse_genomes_project 14 47219724 47224376 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0038985.1 MGP_C57BL6NJ_G0021456.1 mouse_genomes_project 14 19833541 19855514 - MGP_C57BL6NJ_P0038985 protein_coding protein_coding MGP_C57BL6NJ_T0038986.1 MGP_C57BL6NJ_G0021456.1 mouse_genomes_project 14 19833924 19836422 - MGP_C57BL6NJ_P0038986 protein_coding protein_coding MGP_C57BL6NJ_T0038987.1 MGP_C57BL6NJ_G0021456.1 mouse_genomes_project 14 19833924 19854888 - MGP_C57BL6NJ_P0038987 protein_coding protein_coding MGP_C57BL6NJ_T0038989.1 MGP_C57BL6NJ_G0021456.1 mouse_genomes_project 14 19833968 19854890 - MGP_C57BL6NJ_P0038989 protein_coding protein_coding MGP_C57BL6NJ_T0006855.1 MGP_C57BL6NJ_G0005665.1 mouse_genomes_project 14 42267400 42270319 - Gm10101 lincRNA lincRNA MGP_C57BL6NJ_T0006856.1 MGP_C57BL6NJ_G0005665.1 mouse_genomes_project 14 42267405 42270319 - Gm10101 lincRNA lincRNA MGP_C57BL6NJ_T0039392.1 MGP_C57BL6NJ_G0021570.1 mouse_genomes_project 14 31665594 31671179 + MGP_C57BL6NJ_P0039392 Lrit2 protein_coding protein_coding MGP_C57BL6NJ_T0039250.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26306974 26312018 - MGP_C57BL6NJ_P0039250 Dph3 protein_coding protein_coding MGP_C57BL6NJ_T0039251.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26306977 26312018 - MGP_C57BL6NJ_P0039251 Dph3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039252.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26306977 26312018 - MGP_C57BL6NJ_P0039252 Dph3 protein_coding protein_coding MGP_C57BL6NJ_T0039253.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26309166 26312018 - MGP_C57BL6NJ_P0039253 Dph3 protein_coding protein_coding MGP_C57BL6NJ_T0039254.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26309280 26312101 - Dph3 protein_coding processed_transcript MGP_C57BL6NJ_T0039255.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26309284 26311695 - Dph3 protein_coding retained_intron MGP_C57BL6NJ_T0039256.1 MGP_C57BL6NJ_G0021520.1 mouse_genomes_project 14 26311104 26312018 - MGP_C57BL6NJ_P0039256 Dph3 protein_coding protein_coding MGP_C57BL6NJ_T0002649.1 MGP_C57BL6NJ_G0002532.1 mouse_genomes_project 14 50550078 50550143 + Traj57 TR_J_gene processed_transcript MGP_C57BL6NJ_T0002650.1 MGP_C57BL6NJ_G0002532.1 mouse_genomes_project 14 50550080 50550143 + MGP_C57BL6NJ_P0002650 Traj57 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040482.1 MGP_C57BL6NJ_G0021940.1 mouse_genomes_project 14 67927457 67991730 - MGP_C57BL6NJ_P0040482 Piwil2 protein_coding protein_coding MGP_C57BL6NJ_T0039080.1 MGP_C57BL6NJ_G0021486.1 mouse_genomes_project 14 24063067 24402133 - MGP_C57BL6NJ_P0039080 Cacna1d protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039081.1 MGP_C57BL6NJ_G0021486.1 mouse_genomes_project 14 24063078 24402476 - MGP_C57BL6NJ_P0039081 Cacna1d protein_coding protein_coding MGP_C57BL6NJ_T0039082.1 MGP_C57BL6NJ_G0021486.1 mouse_genomes_project 14 24063078 24554025 - MGP_C57BL6NJ_P0039082 Cacna1d protein_coding protein_coding MGP_C57BL6NJ_T0006903.1 MGP_C57BL6NJ_G0005700.1 mouse_genomes_project 14 120448945 120481008 + 1700044C05Rik lincRNA lincRNA MGP_C57BL6NJ_T0002676.1 MGP_C57BL6NJ_G0002556.1 mouse_genomes_project 14 50584749 50584809 + MGP_C57BL6NJ_P0002676 Traj29 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039662.1 MGP_C57BL6NJ_G0021676.1 mouse_genomes_project 14 47317960 47326116 + MGP_C57BL6NJ_P0039662 protein_coding protein_coding MGP_C57BL6NJ_T0039663.1 MGP_C57BL6NJ_G0021676.1 mouse_genomes_project 14 47318033 47326761 + MGP_C57BL6NJ_P0039663 protein_coding protein_coding MGP_C57BL6NJ_T0039664.1 MGP_C57BL6NJ_G0021676.1 mouse_genomes_project 14 47318098 47326611 + MGP_C57BL6NJ_P0039664 protein_coding protein_coding MGP_C57BL6NJ_T0002761.1 MGP_C57BL6NJ_G0002634.1 mouse_genomes_project 14 49324333 49324830 + MGP_C57BL6NJ_P0002761 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0001053.1 MGP_C57BL6NJ_G0000962.1 mouse_genomes_project 14 67094856 67097124 - TEC TEC MGP_C57BL6NJ_T0002671.1 MGP_C57BL6NJ_G0002551.1 mouse_genomes_project 14 50578559 50578617 + MGP_C57BL6NJ_P0002671 Traj34 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039923.1 MGP_C57BL6NJ_G0021737.1 mouse_genomes_project 14 51436835 51436928 + MGP_C57BL6NJ_P0039923 Gm17428 protein_coding protein_coding MGP_C57BL6NJ_T0002762.1 MGP_C57BL6NJ_G0002635.1 mouse_genomes_project 14 49357993 49358520 + MGP_C57BL6NJ_P0002762 Trav7d-5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0038999.1 MGP_C57BL6NJ_G0021461.1 mouse_genomes_project 14 19916984 19939908 + MGP_C57BL6NJ_P0038999 protein_coding protein_coding MGP_C57BL6NJ_T0039002.1 MGP_C57BL6NJ_G0021461.1 mouse_genomes_project 14 19917036 19939899 + MGP_C57BL6NJ_P0039002 protein_coding protein_coding MGP_C57BL6NJ_T0040789.1 MGP_C57BL6NJ_G0022055.1 mouse_genomes_project 14 120342129 120344612 + MGP_C57BL6NJ_P0040789 Gm9376 protein_coding protein_coding MGP_C57BL6NJ_T0013334.1 MGP_C57BL6NJ_G0011379.1 mouse_genomes_project 14 53423180 53423351 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039354.1 MGP_C57BL6NJ_G0021556.1 mouse_genomes_project 14 28764831 28768413 - MGP_C57BL6NJ_P0039354 Fam25c protein_coding protein_coding MGP_C57BL6NJ_T0010200.1 MGP_C57BL6NJ_G0008285.1 mouse_genomes_project 14 57254433 57254543 - Mir719 miRNA miRNA MGP_C57BL6NJ_T0040003.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118262 52121832 - MGP_C57BL6NJ_P0040003 Psme2 protein_coding protein_coding MGP_C57BL6NJ_T0040004.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118263 52121846 - MGP_C57BL6NJ_P0040004 Psme2 protein_coding protein_coding MGP_C57BL6NJ_T0040005.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118268 52119338 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040006.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118268 52120245 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040007.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118787 52120894 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040008.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118805 52121858 - MGP_C57BL6NJ_P0040008 Psme2 protein_coding protein_coding MGP_C57BL6NJ_T0040009.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52118816 52121609 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040010.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52119927 52121718 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040011.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52120050 52121693 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0040012.1 MGP_C57BL6NJ_G0021754.1 mouse_genomes_project 14 52120742 52121640 - Psme2 protein_coding retained_intron MGP_C57BL6NJ_T0099216.1 MGP_C57BL6NJ_G0037280.1 mouse_genomes_project 14 46571049 46571368 - Rpph1 ribozyme ribozyme MGP_C57BL6NJ_T0039206.1 MGP_C57BL6NJ_G0021508.1 mouse_genomes_project 14 25381484 25395017 - MGP_C57BL6NJ_P0039206 Phf7 protein_coding protein_coding MGP_C57BL6NJ_T0040830.1 MGP_C57BL6NJ_G0022073.1 mouse_genomes_project 14 124510770 124514517 + MGP_C57BL6NJ_P0040830 Timm8a2 protein_coding protein_coding MGP_C57BL6NJ_T0039803.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48616793 48622533 - MGP_C57BL6NJ_P0039803 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0039804.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48616793 48617905 - MGP_C57BL6NJ_P0039804 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0039805.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48617336 48622135 - MGP_C57BL6NJ_P0039805 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0039806.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48617348 48622529 - MGP_C57BL6NJ_P0039806 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0039807.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48617357 48622163 - MGP_C57BL6NJ_P0039807 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0039808.1 MGP_C57BL6NJ_G0021704.1 mouse_genomes_project 14 48617753 48622527 - MGP_C57BL6NJ_P0039808 Olfr1507 protein_coding protein_coding MGP_C57BL6NJ_T0013362.1 MGP_C57BL6NJ_G0011407.1 mouse_genomes_project 14 115132429 115132871 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039640.1 MGP_C57BL6NJ_G0021660.1 mouse_genomes_project 14 46816467 46819475 + MGP_C57BL6NJ_P0039640 Rnase10 protein_coding protein_coding MGP_C57BL6NJ_T0039641.1 MGP_C57BL6NJ_G0021660.1 mouse_genomes_project 14 46816645 46819475 + MGP_C57BL6NJ_P0039641 Rnase10 protein_coding protein_coding MGP_C57BL6NJ_T0039340.1 MGP_C57BL6NJ_G0021549.1 mouse_genomes_project 14 28444012 28470256 + MGP_C57BL6NJ_P0039340 Antxrl protein_coding protein_coding MGP_C57BL6NJ_T0002673.1 MGP_C57BL6NJ_G0002553.1 mouse_genomes_project 14 50579961 50580027 + MGP_C57BL6NJ_P0002673 Traj32 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0038824.1 MGP_C57BL6NJ_G0021413.1 mouse_genomes_project 14 13387218 13429001 - MGP_C57BL6NJ_P0038824 Kcnk5 protein_coding protein_coding MGP_C57BL6NJ_T0040699.1 MGP_C57BL6NJ_G0022024.1 mouse_genomes_project 14 101532516 101534896 - MGP_C57BL6NJ_P0040699 Prr30 protein_coding protein_coding MGP_C57BL6NJ_T0040700.1 MGP_C57BL6NJ_G0022024.1 mouse_genomes_project 14 101532524 101535157 - MGP_C57BL6NJ_P0040700 Prr30 protein_coding protein_coding MGP_C57BL6NJ_T0010203.1 MGP_C57BL6NJ_G0008288.1 mouse_genomes_project 14 60050381 60050518 + Mir8098 miRNA miRNA MGP_C57BL6NJ_T0006904.1 MGP_C57BL6NJ_G0005701.1 mouse_genomes_project 14 120847698 120856041 - Gm27198 lincRNA lincRNA MGP_C57BL6NJ_T0039594.1 MGP_C57BL6NJ_G0021636.1 mouse_genomes_project 14 46156211 46157150 + MGP_C57BL6NJ_P0039594 Olfr736 protein_coding protein_coding MGP_C57BL6NJ_T0098824.1 MGP_C57BL6NJ_G0036888.1 mouse_genomes_project 14 14315615 14326107 - pseudogene pseudogene MGP_C57BL6NJ_T0002644.1 MGP_C57BL6NJ_G0002528.1 mouse_genomes_project 14 50508442 50508493 + MGP_C57BL6NJ_P0002644 Trdj1 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040497.1 MGP_C57BL6NJ_G0021949.1 mouse_genomes_project 14 68152364 68169715 - MGP_C57BL6NJ_P0040497 Fam160b2 protein_coding protein_coding MGP_C57BL6NJ_T0040418.1 MGP_C57BL6NJ_G0021916.1 mouse_genomes_project 14 66251303 66300807 - MGP_C57BL6NJ_P0040418 Adam28 protein_coding protein_coding MGP_C57BL6NJ_T0040419.1 MGP_C57BL6NJ_G0021916.1 mouse_genomes_project 14 66252155 66300807 - MGP_C57BL6NJ_P0040419 Adam28 protein_coding protein_coding MGP_C57BL6NJ_T0002696.1 MGP_C57BL6NJ_G0002576.1 mouse_genomes_project 14 50606448 50606510 + MGP_C57BL6NJ_P0002696 Traj6 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039999.1 MGP_C57BL6NJ_G0021753.1 mouse_genomes_project 14 52112225 52115774 - MGP_C57BL6NJ_P0039999 Emc9 protein_coding protein_coding MGP_C57BL6NJ_T0040000.1 MGP_C57BL6NJ_G0021753.1 mouse_genomes_project 14 52112230 52113134 - Emc9 protein_coding retained_intron MGP_C57BL6NJ_T0040001.1 MGP_C57BL6NJ_G0021753.1 mouse_genomes_project 14 52112231 52116130 - MGP_C57BL6NJ_P0040001 Emc9 protein_coding protein_coding MGP_C57BL6NJ_T0040002.1 MGP_C57BL6NJ_G0021753.1 mouse_genomes_project 14 52114201 52116039 - Emc9 protein_coding retained_intron MGP_C57BL6NJ_T0039337.1 MGP_C57BL6NJ_G0021546.1 mouse_genomes_project 14 28347930 28360521 - MGP_C57BL6NJ_P0039337 Zfp488 protein_coding protein_coding MGP_C57BL6NJ_T0011634.1 MGP_C57BL6NJ_G0009719.1 mouse_genomes_project 14 53155299 53155406 + Gm22431 misc_RNA misc_RNA MGP_C57BL6NJ_T0013305.1 MGP_C57BL6NJ_G0011350.1 mouse_genomes_project 14 34935442 34935778 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040792.1 MGP_C57BL6NJ_G0022057.1 mouse_genomes_project 14 120918098 121011685 + MGP_C57BL6NJ_P0040792 Cldn10 protein_coding protein_coding MGP_C57BL6NJ_T0040793.1 MGP_C57BL6NJ_G0022057.1 mouse_genomes_project 14 120918108 121011686 + MGP_C57BL6NJ_P0040793 Cldn10 protein_coding protein_coding MGP_C57BL6NJ_T0040794.1 MGP_C57BL6NJ_G0022057.1 mouse_genomes_project 14 120989196 121012650 + MGP_C57BL6NJ_P0040794 Cldn10 protein_coding protein_coding MGP_C57BL6NJ_T0010180.1 MGP_C57BL6NJ_G0008265.1 mouse_genomes_project 14 15357773 15357886 - Gm27532 miRNA miRNA MGP_C57BL6NJ_T0039458.1 MGP_C57BL6NJ_G0021596.1 mouse_genomes_project 14 41787241 41791246 + Gm15217 protein_coding processed_transcript MGP_C57BL6NJ_T0039459.1 MGP_C57BL6NJ_G0021596.1 mouse_genomes_project 14 41787294 41791436 + MGP_C57BL6NJ_P0039459 Gm15217 protein_coding protein_coding MGP_C57BL6NJ_T0039460.1 MGP_C57BL6NJ_G0021596.1 mouse_genomes_project 14 41788954 41791196 + Gm15217 protein_coding processed_transcript MGP_C57BL6NJ_T0002687.1 MGP_C57BL6NJ_G0002567.1 mouse_genomes_project 14 50594536 50594602 + MGP_C57BL6NJ_P0002687 Traj18 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0101245.1 MGP_C57BL6NJ_G0039291.1 mouse_genomes_project 14 94136108 94136239 - Gm23324 snoRNA snoRNA MGP_C57BL6NJ_T0040423.1 MGP_C57BL6NJ_G0021920.1 mouse_genomes_project 14 66933062 66978984 - MGP_C57BL6NJ_P0040423 Slc25a37 protein_coding protein_coding MGP_C57BL6NJ_T0040424.1 MGP_C57BL6NJ_G0021920.1 mouse_genomes_project 14 66933065 66978984 - Slc25a37 protein_coding retained_intron MGP_C57BL6NJ_T0040425.1 MGP_C57BL6NJ_G0021920.1 mouse_genomes_project 14 66935390 66978839 - MGP_C57BL6NJ_P0040425 Slc25a37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039041.1 MGP_C57BL6NJ_G0021469.1 mouse_genomes_project 14 20463282 20473206 - MGP_C57BL6NJ_P0039041 Pde12 protein_coding protein_coding MGP_C57BL6NJ_T0038991.1 MGP_C57BL6NJ_G0021457.1 mouse_genomes_project 14 19888274 19891947 - MGP_C57BL6NJ_P0038991 protein_coding protein_coding MGP_C57BL6NJ_T0038994.1 MGP_C57BL6NJ_G0021457.1 mouse_genomes_project 14 19888444 19891525 - MGP_C57BL6NJ_P0038994 protein_coding protein_coding MGP_C57BL6NJ_T0038995.1 MGP_C57BL6NJ_G0021457.1 mouse_genomes_project 14 19889024 19891918 - MGP_C57BL6NJ_P0038995 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038996.1 MGP_C57BL6NJ_G0021457.1 mouse_genomes_project 14 19889031 19890063 - protein_coding retained_intron MGP_C57BL6NJ_T0040764.1 MGP_C57BL6NJ_G0022041.1 mouse_genomes_project 14 105941400 105991455 + MGP_C57BL6NJ_P0040764 Ndfip2 protein_coding protein_coding MGP_C57BL6NJ_T0040765.1 MGP_C57BL6NJ_G0022041.1 mouse_genomes_project 14 105941545 105976535 + Ndfip2 protein_coding retained_intron MGP_C57BL6NJ_T0040766.1 MGP_C57BL6NJ_G0022041.1 mouse_genomes_project 14 105973879 105991020 + Ndfip2 protein_coding retained_intron MGP_C57BL6NJ_T0040767.1 MGP_C57BL6NJ_G0022041.1 mouse_genomes_project 14 105974271 105990954 + Ndfip2 protein_coding retained_intron MGP_C57BL6NJ_T0040768.1 MGP_C57BL6NJ_G0022041.1 mouse_genomes_project 14 105976136 105991020 + Ndfip2 protein_coding processed_transcript MGP_C57BL6NJ_T0006906.1 MGP_C57BL6NJ_G0005703.1 mouse_genomes_project 14 122659101 122664823 - Gm26679 lincRNA lincRNA MGP_C57BL6NJ_T0040769.1 MGP_C57BL6NJ_G0022042.1 mouse_genomes_project 14 106604156 106609886 - MGP_C57BL6NJ_P0040769 Spry2 protein_coding protein_coding MGP_C57BL6NJ_T0099910.1 MGP_C57BL6NJ_G0037956.1 mouse_genomes_project 14 42753528 42753634 - Gm24378 snRNA snRNA MGP_C57BL6NJ_T0010225.1 MGP_C57BL6NJ_G0008310.1 mouse_genomes_project 14 106512322 106512415 + Gm22406 miRNA miRNA MGP_C57BL6NJ_T0039113.1 MGP_C57BL6NJ_G0021492.1 mouse_genomes_project 14 24923179 24982888 + MGP_C57BL6NJ_P0039113 Tmem110 protein_coding protein_coding MGP_C57BL6NJ_T0039114.1 MGP_C57BL6NJ_G0021492.1 mouse_genomes_project 14 24923183 24980472 + MGP_C57BL6NJ_P0039114 Tmem110 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039115.1 MGP_C57BL6NJ_G0021492.1 mouse_genomes_project 14 24972346 24980866 + Tmem110 protein_coding processed_transcript MGP_C57BL6NJ_T0039116.1 MGP_C57BL6NJ_G0021492.1 mouse_genomes_project 14 24976413 24978454 + Tmem110 protein_coding retained_intron MGP_C57BL6NJ_T0039117.1 MGP_C57BL6NJ_G0021492.1 mouse_genomes_project 14 24978256 24980902 + Tmem110 protein_coding retained_intron MGP_C57BL6NJ_T0040258.1 MGP_C57BL6NJ_G0021852.1 mouse_genomes_project 14 59865505 59895288 + MGP_C57BL6NJ_P0040258 Serpine3 protein_coding protein_coding MGP_C57BL6NJ_T0002648.1 MGP_C57BL6NJ_G0002531.1 mouse_genomes_project 14 50548853 50548916 + MGP_C57BL6NJ_P0002648 Traj58 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0099009.1 MGP_C57BL6NJ_G0037073.1 mouse_genomes_project 14 73685370 73685462 - Gm24876 rRNA rRNA MGP_C57BL6NJ_T0099911.1 MGP_C57BL6NJ_G0037957.1 mouse_genomes_project 14 44273035 44273139 + Gm23469 snRNA snRNA MGP_C57BL6NJ_T0099899.1 MGP_C57BL6NJ_G0037945.1 mouse_genomes_project 14 6554106 6554203 + Gm25964 snRNA snRNA MGP_C57BL6NJ_T0040818.1 MGP_C57BL6NJ_G0022066.1 mouse_genomes_project 14 123381410 123617551 + MGP_C57BL6NJ_P0040818 Farp1 protein_coding protein_coding MGP_C57BL6NJ_T0040819.1 MGP_C57BL6NJ_G0022066.1 mouse_genomes_project 14 123381774 123668476 + MGP_C57BL6NJ_P0040819 Farp1 protein_coding protein_coding MGP_C57BL6NJ_T0040820.1 MGP_C57BL6NJ_G0022066.1 mouse_genomes_project 14 123447908 123622342 + Farp1 protein_coding processed_transcript MGP_C57BL6NJ_T0040821.1 MGP_C57BL6NJ_G0022066.1 mouse_genomes_project 14 123639629 123652654 + Farp1 protein_coding retained_intron MGP_C57BL6NJ_T0040468.1 MGP_C57BL6NJ_G0021938.1 mouse_genomes_project 14 67760872 67836498 - MGP_C57BL6NJ_P0040468 Ppp3cc protein_coding protein_coding MGP_C57BL6NJ_T0040563.1 MGP_C57BL6NJ_G0021967.1 mouse_genomes_project 14 72457598 72542357 + MGP_C57BL6NJ_P0040563 Htr2a protein_coding protein_coding MGP_C57BL6NJ_T0039005.1 MGP_C57BL6NJ_G0021462.1 mouse_genomes_project 14 19952084 19981722 + protein_coding processed_transcript MGP_C57BL6NJ_T0039007.1 MGP_C57BL6NJ_G0021462.1 mouse_genomes_project 14 19952590 19990500 + MGP_C57BL6NJ_P0039007 protein_coding protein_coding MGP_C57BL6NJ_T0039008.1 MGP_C57BL6NJ_G0021462.1 mouse_genomes_project 14 19952908 19990691 + MGP_C57BL6NJ_P0039008 protein_coding protein_coding MGP_C57BL6NJ_T0039011.1 MGP_C57BL6NJ_G0021462.1 mouse_genomes_project 14 19953880 19985533 + protein_coding processed_transcript MGP_C57BL6NJ_T0039015.1 MGP_C57BL6NJ_G0021462.1 mouse_genomes_project 14 19981209 19991926 + MGP_C57BL6NJ_P0039015 protein_coding protein_coding MGP_C57BL6NJ_T0102842.1 MGP_C57BL6NJ_G0040636.1 mouse_genomes_project 14 38882038 38882501 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0039573.1 MGP_C57BL6NJ_G0021621.1 mouse_genomes_project 14 45607818 45615472 - MGP_C57BL6NJ_P0039573 Olfr722 protein_coding protein_coding MGP_C57BL6NJ_T0039464.1 MGP_C57BL6NJ_G0021598.1 mouse_genomes_project 14 42201183 42212168 + MGP_C57BL6NJ_P0039464 Cdkn3 protein_coding protein_coding MGP_C57BL6NJ_T0039465.1 MGP_C57BL6NJ_G0021598.1 mouse_genomes_project 14 42201282 42212130 + MGP_C57BL6NJ_P0039465 Cdkn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002744.1 MGP_C57BL6NJ_G0002617.1 mouse_genomes_project 14 48813698 48814207 + MGP_C57BL6NJ_P0002744 Trav7-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040018.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52134306 52140772 + MGP_C57BL6NJ_P0040018 Irf9 protein_coding protein_coding MGP_C57BL6NJ_T0040019.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52134720 52140772 + MGP_C57BL6NJ_P0040019 Irf9 protein_coding protein_coding MGP_C57BL6NJ_T0040020.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52135312 52136602 + Irf9 protein_coding retained_intron MGP_C57BL6NJ_T0040021.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52135314 52140772 + MGP_C57BL6NJ_P0040021 Irf9 protein_coding protein_coding MGP_C57BL6NJ_T0040022.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52136561 52140769 + Irf9 protein_coding retained_intron MGP_C57BL6NJ_T0040023.1 MGP_C57BL6NJ_G0021756.1 mouse_genomes_project 14 52138016 52139475 + Irf9 protein_coding retained_intron MGP_C57BL6NJ_T0011632.1 MGP_C57BL6NJ_G0009717.1 mouse_genomes_project 14 40791403 40791686 - Gm22637 misc_RNA misc_RNA MGP_C57BL6NJ_T0038782.1 MGP_C57BL6NJ_G0021402.1 mouse_genomes_project 14 10614970 11019766 + MGP_C57BL6NJ_P0038782 Thrb protein_coding protein_coding MGP_C57BL6NJ_T0038783.1 MGP_C57BL6NJ_G0021402.1 mouse_genomes_project 14 10614970 11021295 + MGP_C57BL6NJ_P0038783 Thrb protein_coding protein_coding MGP_C57BL6NJ_T0038784.1 MGP_C57BL6NJ_G0021402.1 mouse_genomes_project 14 10953701 11021293 + MGP_C57BL6NJ_P0038784 Thrb protein_coding protein_coding MGP_C57BL6NJ_T0002754.1 MGP_C57BL6NJ_G0002627.1 mouse_genomes_project 14 49111062 49111297 + MGP_C57BL6NJ_P0002754 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040058.1 MGP_C57BL6NJ_G0021762.1 mouse_genomes_project 14 52193460 52203081 - MGP_C57BL6NJ_P0040058 Nedd8 protein_coding protein_coding MGP_C57BL6NJ_T0040059.1 MGP_C57BL6NJ_G0021762.1 mouse_genomes_project 14 52193462 52203114 - MGP_C57BL6NJ_P0040059 Nedd8 protein_coding protein_coding MGP_C57BL6NJ_T0017868.1 MGP_C57BL6NJ_G0015667.1 mouse_genomes_project 14 64880351 64955531 - 4930438E09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002772.1 MGP_C57BL6NJ_G0002643.1 mouse_genomes_project 14 49795314 49795844 + MGP_C57BL6NJ_P0002772 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039442.1 MGP_C57BL6NJ_G0021593.1 mouse_genomes_project 14 40696110 40708761 - MGP_C57BL6NJ_P0039442 Gnpnat1 protein_coding protein_coding MGP_C57BL6NJ_T0013285.1 MGP_C57BL6NJ_G0011330.1 mouse_genomes_project 14 11089741 11090619 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010215.1 MGP_C57BL6NJ_G0008300.1 mouse_genomes_project 14 73150533 73150636 + Gm44482 miRNA miRNA MGP_C57BL6NJ_T0038726.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4072668 4807718 + MGP_C57BL6NJ_P0038726 Ptprg protein_coding protein_coding MGP_C57BL6NJ_T0038727.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4072689 4804241 + MGP_C57BL6NJ_P0038727 Ptprg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038728.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4072717 4510087 + Ptprg protein_coding retained_intron MGP_C57BL6NJ_T0038729.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4650529 4682294 + MGP_C57BL6NJ_P0038729 Ptprg protein_coding protein_coding MGP_C57BL6NJ_T0038730.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4752923 4804240 + MGP_C57BL6NJ_P0038730 Ptprg protein_coding protein_coding MGP_C57BL6NJ_T0038731.1 MGP_C57BL6NJ_G0021381.1 mouse_genomes_project 14 4784635 4789246 + Ptprg protein_coding processed_transcript MGP_C57BL6NJ_T0039857.1 MGP_C57BL6NJ_G0021720.1 mouse_genomes_project 14 51059267 51059720 + MGP_C57BL6NJ_P0039857 Gm20726 protein_coding protein_coding MGP_C57BL6NJ_T0040364.1 MGP_C57BL6NJ_G0021898.1 mouse_genomes_project 14 63780254 63794648 + MGP_C57BL6NJ_P0040364 Trim35 protein_coding protein_coding MGP_C57BL6NJ_T0040365.1 MGP_C57BL6NJ_G0021898.1 mouse_genomes_project 14 63780313 63791521 + MGP_C57BL6NJ_P0040365 Trim35 protein_coding protein_coding MGP_C57BL6NJ_T0039668.1 MGP_C57BL6NJ_G0021680.1 mouse_genomes_project 14 47881129 47882022 + MGP_C57BL6NJ_P0039668 Ear6 protein_coding protein_coding MGP_C57BL6NJ_T0039669.1 MGP_C57BL6NJ_G0021680.1 mouse_genomes_project 14 47881198 47882074 + MGP_C57BL6NJ_P0039669 Ear6 protein_coding protein_coding MGP_C57BL6NJ_T0040437.1 MGP_C57BL6NJ_G0021926.1 mouse_genomes_project 14 67090147 67183974 + MGP_C57BL6NJ_P0040437 Loxl2 protein_coding protein_coding MGP_C57BL6NJ_T0040438.1 MGP_C57BL6NJ_G0021926.1 mouse_genomes_project 14 67090557 67181366 + MGP_C57BL6NJ_P0040438 Loxl2 protein_coding protein_coding MGP_C57BL6NJ_T0010176.1 MGP_C57BL6NJ_G0008261.1 mouse_genomes_project 14 5223229 5223309 + Gm27907 miRNA miRNA MGP_C57BL6NJ_T0099919.1 MGP_C57BL6NJ_G0037965.1 mouse_genomes_project 14 48443299 48444864 + Gm26328 snRNA snRNA MGP_C57BL6NJ_T0101259.1 MGP_C57BL6NJ_G0039305.1 mouse_genomes_project 14 109666568 109666686 + Gm24229 snoRNA snoRNA MGP_C57BL6NJ_T0040698.1 MGP_C57BL6NJ_G0022023.1 mouse_genomes_project 14 100129116 100426924 - MGP_C57BL6NJ_P0040698 Klf12 protein_coding protein_coding MGP_C57BL6NJ_T0002809.1 MGP_C57BL6NJ_G0002673.1 mouse_genomes_project 14 50540254 50540887 - MGP_C57BL6NJ_P0002809 Trdv5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039161.1 MGP_C57BL6NJ_G0021502.1 mouse_genomes_project 14 25221064 25267477 - MGP_C57BL6NJ_P0039161 Smim4 protein_coding protein_coding MGP_C57BL6NJ_T0039162.1 MGP_C57BL6NJ_G0021502.1 mouse_genomes_project 14 25221591 25267497 - MGP_C57BL6NJ_P0039162 Smim4 protein_coding protein_coding MGP_C57BL6NJ_T0039163.1 MGP_C57BL6NJ_G0021502.1 mouse_genomes_project 14 25261506 25267422 - MGP_C57BL6NJ_P0039163 Smim4 protein_coding protein_coding MGP_C57BL6NJ_T0039164.1 MGP_C57BL6NJ_G0021502.1 mouse_genomes_project 14 25261803 25267514 - MGP_C57BL6NJ_P0039164 Smim4 protein_coding protein_coding MGP_C57BL6NJ_T0099915.1 MGP_C57BL6NJ_G0037961.1 mouse_genomes_project 14 45206864 45207005 - Gm22116 snRNA snRNA MGP_C57BL6NJ_T0039107.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24808882 24915558 + MGP_C57BL6NJ_P0039107 Sfmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0039108.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24809200 24912679 + MGP_C57BL6NJ_P0039108 Sfmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0039109.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24809648 24920308 + MGP_C57BL6NJ_P0039109 Sfmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0039110.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24810524 24915941 + MGP_C57BL6NJ_P0039110 Sfmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0039111.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24870370 24915940 + MGP_C57BL6NJ_P0039111 Sfmbt1 protein_coding protein_coding MGP_C57BL6NJ_T0039112.1 MGP_C57BL6NJ_G0021491.1 mouse_genomes_project 14 24891245 24893001 + Sfmbt1 protein_coding retained_intron MGP_C57BL6NJ_T0006863.1 MGP_C57BL6NJ_G0005669.1 mouse_genomes_project 14 47188930 47194174 + Gm21718 lincRNA lincRNA MGP_C57BL6NJ_T0006864.1 MGP_C57BL6NJ_G0005669.1 mouse_genomes_project 14 47190261 47195182 + Gm21718 lincRNA lincRNA MGP_C57BL6NJ_T0039587.1 MGP_C57BL6NJ_G0021632.1 mouse_genomes_project 14 46046818 46047812 - MGP_C57BL6NJ_P0039587 Olfr733 protein_coding protein_coding MGP_C57BL6NJ_T0017888.1 MGP_C57BL6NJ_G0015675.1 mouse_genomes_project 14 117197667 117210429 - 4930505G20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0040695.1 MGP_C57BL6NJ_G0022020.1 mouse_genomes_project 14 99241958 99265947 - MGP_C57BL6NJ_P0040695 Dis3 protein_coding protein_coding MGP_C57BL6NJ_T0099900.1 MGP_C57BL6NJ_G0037946.1 mouse_genomes_project 14 11044284 11044347 + Gm27851 snRNA snRNA MGP_C57BL6NJ_T0039913.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51396718 51425429 - MGP_C57BL6NJ_P0039913 Myh6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039914.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51396780 51426545 - MGP_C57BL6NJ_P0039914 Myh6 protein_coding protein_coding MGP_C57BL6NJ_T0039915.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51416011 51417891 - Myh6 protein_coding retained_intron MGP_C57BL6NJ_T0039916.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51423941 51426478 - MGP_C57BL6NJ_P0039916 Myh6 protein_coding protein_coding MGP_C57BL6NJ_T0039917.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51423941 51426509 - MGP_C57BL6NJ_P0039917 Myh6 protein_coding protein_coding MGP_C57BL6NJ_T0039918.1 MGP_C57BL6NJ_G0021735.1 mouse_genomes_project 14 51425253 51426831 - MGP_C57BL6NJ_P0039918 Myh6 protein_coding protein_coding MGP_C57BL6NJ_T0040758.1 MGP_C57BL6NJ_G0022039.1 mouse_genomes_project 14 105118866 105166318 - MGP_C57BL6NJ_P0040758 Rnf219 protein_coding protein_coding MGP_C57BL6NJ_T0039858.1 MGP_C57BL6NJ_G0021721.1 mouse_genomes_project 14 51069576 51076920 + MGP_C57BL6NJ_P0039858 Gm17606 protein_coding protein_coding MGP_C57BL6NJ_T0038965.1 MGP_C57BL6NJ_G0021449.1 mouse_genomes_project 14 18005822 18011288 + MGP_C57BL6NJ_P0038965 Rps24 protein_coding protein_coding MGP_C57BL6NJ_T0038966.1 MGP_C57BL6NJ_G0021449.1 mouse_genomes_project 14 18005897 18011007 + MGP_C57BL6NJ_P0038966 Rps24 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040557.1 MGP_C57BL6NJ_G0021965.1 mouse_genomes_project 14 71273727 71310036 - MGP_C57BL6NJ_P0040557 Gm5519 protein_coding protein_coding MGP_C57BL6NJ_T0102858.1 MGP_C57BL6NJ_G0040652.1 mouse_genomes_project 14 127220482 127220767 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002660.1 MGP_C57BL6NJ_G0002540.1 mouse_genomes_project 14 50566218 50566281 + MGP_C57BL6NJ_P0002660 Traj46 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039720.1 MGP_C57BL6NJ_G0021687.1 mouse_genomes_project 14 48053163 48068566 - MGP_C57BL6NJ_P0039720 Zfp219 protein_coding protein_coding MGP_C57BL6NJ_T0039721.1 MGP_C57BL6NJ_G0021687.1 mouse_genomes_project 14 48053172 48067546 - MGP_C57BL6NJ_P0039721 Zfp219 protein_coding protein_coding MGP_C57BL6NJ_T0040577.1 MGP_C57BL6NJ_G0021971.1 mouse_genomes_project 14 72961252 73012594 - MGP_C57BL6NJ_P0040577 Lrrc63 protein_coding protein_coding MGP_C57BL6NJ_T0002870.1 MGP_C57BL6NJ_G0002724.1 mouse_genomes_project 14 50293348 50293966 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0038984.1 MGP_C57BL6NJ_G0021455.1 mouse_genomes_project 14 19833452 19855514 - MGP_C57BL6NJ_P0038984 Plac9a protein_coding protein_coding MGP_C57BL6NJ_T0038988.1 MGP_C57BL6NJ_G0021455.1 mouse_genomes_project 14 19833925 19854890 - MGP_C57BL6NJ_P0038988 Plac9a protein_coding protein_coding MGP_C57BL6NJ_T0006890.1 MGP_C57BL6NJ_G0005689.1 mouse_genomes_project 14 67748317 67760634 + Gm26908 lincRNA lincRNA MGP_C57BL6NJ_T0002688.1 MGP_C57BL6NJ_G0002568.1 mouse_genomes_project 14 50595534 50595597 + MGP_C57BL6NJ_P0002688 Traj17 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0099907.1 MGP_C57BL6NJ_G0037953.1 mouse_genomes_project 14 31352450 31352556 + Gm25204 snRNA snRNA MGP_C57BL6NJ_T0039585.1 MGP_C57BL6NJ_G0021630.1 mouse_genomes_project 14 45980791 45981772 - MGP_C57BL6NJ_P0039585 Olfr731 protein_coding protein_coding MGP_C57BL6NJ_T0040341.1 MGP_C57BL6NJ_G0021890.1 mouse_genomes_project 14 63263003 63298639 + MGP_C57BL6NJ_P0040341 Ccdc25 protein_coding protein_coding MGP_C57BL6NJ_T0002672.1 MGP_C57BL6NJ_G0002552.1 mouse_genomes_project 14 50579218 50579275 + MGP_C57BL6NJ_P0002672 Traj33 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0038702.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 576570 609755 - MGP_C57BL6NJ_P0038702 Acox2 protein_coding protein_coding MGP_C57BL6NJ_T0038703.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 576570 610276 - MGP_C57BL6NJ_P0038703 Acox2 protein_coding protein_coding MGP_C57BL6NJ_T0038704.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 590516 597328 - Acox2 protein_coding processed_transcript MGP_C57BL6NJ_T0038705.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 594634 597355 - Acox2 protein_coding retained_intron MGP_C57BL6NJ_T0038706.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 598800 604445 - Acox2 protein_coding retained_intron MGP_C57BL6NJ_T0038707.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 604464 608794 - MGP_C57BL6NJ_P0038707 Acox2 protein_coding protein_coding MGP_C57BL6NJ_T0038708.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 606116 609077 - Acox2 protein_coding processed_transcript MGP_C57BL6NJ_T0038709.1 MGP_C57BL6NJ_G0021375.1 mouse_genomes_project 14 606845 607857 - Acox2 protein_coding retained_intron MGP_C57BL6NJ_T0040353.1 MGP_C57BL6NJ_G0021894.1 mouse_genomes_project 14 63469911 63524554 - MGP_C57BL6NJ_P0040353 Adam2 protein_coding protein_coding MGP_C57BL6NJ_T0017883.1 MGP_C57BL6NJ_G0015673.1 mouse_genomes_project 14 105789608 105794895 - Gm17066 processed_transcript processed_transcript MGP_C57BL6NJ_T0017884.1 MGP_C57BL6NJ_G0015673.1 mouse_genomes_project 14 105789627 105794680 - Gm17066 processed_transcript processed_transcript MGP_C57BL6NJ_T0039623.1 MGP_C57BL6NJ_G0021656.1 mouse_genomes_project 14 46713781 46715982 + MGP_C57BL6NJ_P0039623 Apex1 protein_coding protein_coding MGP_C57BL6NJ_T0039624.1 MGP_C57BL6NJ_G0021656.1 mouse_genomes_project 14 46713782 46715394 + MGP_C57BL6NJ_P0039624 Apex1 protein_coding protein_coding MGP_C57BL6NJ_T0039625.1 MGP_C57BL6NJ_G0021656.1 mouse_genomes_project 14 46713791 46714422 + MGP_C57BL6NJ_P0039625 Apex1 protein_coding protein_coding MGP_C57BL6NJ_T0039626.1 MGP_C57BL6NJ_G0021656.1 mouse_genomes_project 14 46714098 46715982 + MGP_C57BL6NJ_P0039626 Apex1 protein_coding protein_coding MGP_C57BL6NJ_T0039795.1 MGP_C57BL6NJ_G0021702.1 mouse_genomes_project 14 48553888 48568334 + MGP_C57BL6NJ_P0039795 Olfr1509 protein_coding protein_coding MGP_C57BL6NJ_T0039796.1 MGP_C57BL6NJ_G0021702.1 mouse_genomes_project 14 48553889 48567723 + MGP_C57BL6NJ_P0039796 Olfr1509 protein_coding protein_coding MGP_C57BL6NJ_T0039797.1 MGP_C57BL6NJ_G0021702.1 mouse_genomes_project 14 48553924 48567557 + MGP_C57BL6NJ_P0039797 Olfr1509 protein_coding protein_coding MGP_C57BL6NJ_T0039798.1 MGP_C57BL6NJ_G0021702.1 mouse_genomes_project 14 48566279 48567816 + MGP_C57BL6NJ_P0039798 Olfr1509 protein_coding protein_coding MGP_C57BL6NJ_T0039799.1 MGP_C57BL6NJ_G0021702.1 mouse_genomes_project 14 48567324 48568334 + MGP_C57BL6NJ_P0039799 Olfr1509 protein_coding protein_coding MGP_C57BL6NJ_T0099944.1 MGP_C57BL6NJ_G0037990.1 mouse_genomes_project 14 105932757 105932864 + Gm22290 snRNA snRNA MGP_C57BL6NJ_T0039244.1 MGP_C57BL6NJ_G0021517.1 mouse_genomes_project 14 25815432 25842873 + Btd protein_coding processed_transcript MGP_C57BL6NJ_T0039245.1 MGP_C57BL6NJ_G0021517.1 mouse_genomes_project 14 25815461 25844281 + MGP_C57BL6NJ_P0039245 Btd protein_coding protein_coding MGP_C57BL6NJ_T0002806.1 MGP_C57BL6NJ_G0002670.1 mouse_genomes_project 14 50322626 50323285 + MGP_C57BL6NJ_P0002806 Trdv2-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040777.1 MGP_C57BL6NJ_G0022049.1 mouse_genomes_project 14 116881105 116917275 + Gpc5 protein_coding retained_intron MGP_C57BL6NJ_T0040778.1 MGP_C57BL6NJ_G0022049.1 mouse_genomes_project 14 116881140 118455037 + MGP_C57BL6NJ_P0040778 Gpc5 protein_coding protein_coding MGP_C57BL6NJ_T0040779.1 MGP_C57BL6NJ_G0022049.1 mouse_genomes_project 14 116881162 117218680 + MGP_C57BL6NJ_P0040779 Gpc5 protein_coding protein_coding MGP_C57BL6NJ_T0040780.1 MGP_C57BL6NJ_G0022049.1 mouse_genomes_project 14 116881516 118454295 + MGP_C57BL6NJ_P0040780 Gpc5 protein_coding protein_coding MGP_C57BL6NJ_T0039447.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40953535 41018506 - MGP_C57BL6NJ_P0039447 Ddhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039448.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40953846 40981637 - Ddhd1 protein_coding retained_intron MGP_C57BL6NJ_T0039449.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955012 41018461 - MGP_C57BL6NJ_P0039449 Ddhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039450.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955012 41018461 - MGP_C57BL6NJ_P0039450 Ddhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039451.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955083 40983552 - Ddhd1 protein_coding retained_intron MGP_C57BL6NJ_T0039452.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955296 40963089 - MGP_C57BL6NJ_P0039452 Ddhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039453.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955688 40981148 - MGP_C57BL6NJ_P0039453 Ddhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039454.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40955778 41018505 - MGP_C57BL6NJ_P0039454 Ddhd1 protein_coding protein_coding MGP_C57BL6NJ_T0039455.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40965365 40969704 - Ddhd1 protein_coding retained_intron MGP_C57BL6NJ_T0039456.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40981073 41017764 - Ddhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0039457.1 MGP_C57BL6NJ_G0021595.1 mouse_genomes_project 14 40988768 41017781 - Ddhd1 protein_coding retained_intron MGP_C57BL6NJ_T0099932.1 MGP_C57BL6NJ_G0037978.1 mouse_genomes_project 14 85250375 85250465 - Gm23926 snRNA snRNA MGP_C57BL6NJ_T0013323.1 MGP_C57BL6NJ_G0011368.1 mouse_genomes_project 14 48761654 48761879 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040420.1 MGP_C57BL6NJ_G0021917.1 mouse_genomes_project 14 66703363 66715673 + MGP_C57BL6NJ_P0040420 Stc1 protein_coding protein_coding MGP_C57BL6NJ_T0038867.1 MGP_C57BL6NJ_G0021430.1 mouse_genomes_project 14 13975400 13991371 + MGP_C57BL6NJ_P0038867 Zswim8 protein_coding protein_coding MGP_C57BL6NJ_T0039627.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46716052 46719618 - MGP_C57BL6NJ_P0039627 Tmem55b protein_coding protein_coding MGP_C57BL6NJ_T0039628.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46716057 46719699 - MGP_C57BL6NJ_P0039628 Tmem55b protein_coding protein_coding MGP_C57BL6NJ_T0039629.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46716059 46719694 - Tmem55b protein_coding retained_intron MGP_C57BL6NJ_T0039630.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46716708 46718052 - MGP_C57BL6NJ_P0039630 Tmem55b protein_coding protein_coding MGP_C57BL6NJ_T0039631.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46717668 46719646 - MGP_C57BL6NJ_P0039631 Tmem55b protein_coding protein_coding MGP_C57BL6NJ_T0039632.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46717764 46719676 - Tmem55b protein_coding retained_intron MGP_C57BL6NJ_T0039633.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46717866 46718606 - Tmem55b protein_coding retained_intron MGP_C57BL6NJ_T0039634.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46718100 46719681 - Tmem55b protein_coding retained_intron MGP_C57BL6NJ_T0039635.1 MGP_C57BL6NJ_G0021657.1 mouse_genomes_project 14 46718177 46719643 - Tmem55b protein_coding retained_intron MGP_C57BL6NJ_T0098826.1 MGP_C57BL6NJ_G0036890.1 mouse_genomes_project 14 107444702 107444892 - pseudogene pseudogene MGP_C57BL6NJ_T0039822.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50770025 50811323 - MGP_C57BL6NJ_P0039822 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0039823.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50770027 50820290 - MGP_C57BL6NJ_P0039823 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0039824.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50770028 50812078 - MGP_C57BL6NJ_P0039824 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0039825.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50774270 50784551 - Slc7a7 protein_coding processed_transcript MGP_C57BL6NJ_T0039826.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50774719 50799829 - Slc7a7 protein_coding processed_transcript MGP_C57BL6NJ_T0039827.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50779448 50812462 - MGP_C57BL6NJ_P0039827 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0039828.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50810689 50814055 - MGP_C57BL6NJ_P0039828 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0039829.1 MGP_C57BL6NJ_G0021709.1 mouse_genomes_project 14 50810826 50820371 - MGP_C57BL6NJ_P0039829 Slc7a7 protein_coding protein_coding MGP_C57BL6NJ_T0040122.1 MGP_C57BL6NJ_G0021802.1 mouse_genomes_project 14 53676300 53705787 + MGP_C57BL6NJ_P0040122 protein_coding protein_coding MGP_C57BL6NJ_T0039582.1 MGP_C57BL6NJ_G0021627.1 mouse_genomes_project 14 45866587 45867523 - MGP_C57BL6NJ_P0039582 Olfr728 protein_coding protein_coding MGP_C57BL6NJ_T0038975.1 MGP_C57BL6NJ_G0021451.1 mouse_genomes_project 14 19199876 19206187 + Ppif protein_coding retained_intron MGP_C57BL6NJ_T0038976.1 MGP_C57BL6NJ_G0021451.1 mouse_genomes_project 14 19199892 19206191 + MGP_C57BL6NJ_P0038976 Ppif protein_coding protein_coding MGP_C57BL6NJ_T0002691.1 MGP_C57BL6NJ_G0002571.1 mouse_genomes_project 14 50599501 50599558 + MGP_C57BL6NJ_P0002691 Traj13 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0102851.1 MGP_C57BL6NJ_G0040645.1 mouse_genomes_project 14 39965561 39981646 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040120.1 MGP_C57BL6NJ_G0021800.1 mouse_genomes_project 14 53431831 53452094 - MGP_C57BL6NJ_P0040120 Zmym5 protein_coding protein_coding MGP_C57BL6NJ_T0040246.1 MGP_C57BL6NJ_G0021848.1 mouse_genomes_project 14 59433405 59452345 - MGP_C57BL6NJ_P0040246 Dleu7 protein_coding protein_coding MGP_C57BL6NJ_T0040621.1 MGP_C57BL6NJ_G0021986.1 mouse_genomes_project 14 74574669 74599903 - MGP_C57BL6NJ_P0040621 Serp2 protein_coding protein_coding MGP_C57BL6NJ_T0039601.1 MGP_C57BL6NJ_G0021642.1 mouse_genomes_project 14 46326625 46327561 + MGP_C57BL6NJ_P0039601 Olfr743 protein_coding protein_coding MGP_C57BL6NJ_T0040453.1 MGP_C57BL6NJ_G0021935.1 mouse_genomes_project 14 67693683 67698781 - MGP_C57BL6NJ_P0040453 9930012K11Rik protein_coding protein_coding MGP_C57BL6NJ_T0040454.1 MGP_C57BL6NJ_G0021935.1 mouse_genomes_project 14 67693683 67698781 - MGP_C57BL6NJ_P0040454 9930012K11Rik protein_coding protein_coding MGP_C57BL6NJ_T0040455.1 MGP_C57BL6NJ_G0021935.1 mouse_genomes_project 14 67693686 67696197 - 9930012K11Rik protein_coding retained_intron MGP_C57BL6NJ_T0040456.1 MGP_C57BL6NJ_G0021935.1 mouse_genomes_project 14 67694176 67695746 - MGP_C57BL6NJ_P0040456 9930012K11Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040457.1 MGP_C57BL6NJ_G0021935.1 mouse_genomes_project 14 67694309 67696089 - 9930012K11Rik protein_coding retained_intron MGP_C57BL6NJ_T0040217.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57673578 57740107 + MGP_C57BL6NJ_P0040217 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040218.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57674311 57740148 + MGP_C57BL6NJ_P0040218 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040219.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57674332 57739633 + Spata13 protein_coding processed_transcript MGP_C57BL6NJ_T0040220.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57739560 57827225 + MGP_C57BL6NJ_P0040220 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040221.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57740714 57759973 + MGP_C57BL6NJ_P0040221 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040222.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57753355 57757277 + Spata13 protein_coding processed_transcript MGP_C57BL6NJ_T0040223.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57757135 57810638 + MGP_C57BL6NJ_P0040223 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040224.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57787679 57827214 + MGP_C57BL6NJ_P0040224 Spata13 protein_coding protein_coding MGP_C57BL6NJ_T0040225.1 MGP_C57BL6NJ_G0021836.1 mouse_genomes_project 14 57811698 57825331 + Spata13 protein_coding retained_intron MGP_C57BL6NJ_T0039133.1 MGP_C57BL6NJ_G0021497.1 mouse_genomes_project 14 25074468 25112566 + MGP_C57BL6NJ_P0039133 Nek4 protein_coding protein_coding MGP_C57BL6NJ_T0040524.1 MGP_C57BL6NJ_G0021959.1 mouse_genomes_project 14 70737625 70757612 - MGP_C57BL6NJ_P0040524 Cysltr2 protein_coding protein_coding MGP_C57BL6NJ_T0040525.1 MGP_C57BL6NJ_G0021959.1 mouse_genomes_project 14 70737625 70757612 - MGP_C57BL6NJ_P0040525 Cysltr2 protein_coding protein_coding MGP_C57BL6NJ_T0039909.1 MGP_C57BL6NJ_G0021731.1 mouse_genomes_project 14 51360781 51366888 - MGP_C57BL6NJ_P0039909 Slc22a17 protein_coding protein_coding MGP_C57BL6NJ_T0006860.1 MGP_C57BL6NJ_G0005667.1 mouse_genomes_project 14 45841491 45854435 + lincRNA lincRNA MGP_C57BL6NJ_T0003690.1 MGP_C57BL6NJ_G0003342.1 mouse_genomes_project 14 33234826 33251046 + antisense antisense MGP_C57BL6NJ_T0040873.1 MGP_C57BL6NJ_G0022085.1 mouse_genomes_project 14 126569477 127309384 - MGP_C57BL6NJ_P0040873 Fgf14 protein_coding protein_coding MGP_C57BL6NJ_T0040874.1 MGP_C57BL6NJ_G0022085.1 mouse_genomes_project 14 126569861 126793817 - MGP_C57BL6NJ_P0040874 Fgf14 protein_coding protein_coding MGP_C57BL6NJ_T0101251.1 MGP_C57BL6NJ_G0039297.1 mouse_genomes_project 14 100719646 100719778 + Gm26367 snoRNA snoRNA MGP_C57BL6NJ_T0040548.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 70916368 71021202 - Rb1 protein_coding processed_transcript MGP_C57BL6NJ_T0040549.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 70923314 71063708 - MGP_C57BL6NJ_P0040549 Rb1 protein_coding protein_coding MGP_C57BL6NJ_T0040550.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 70924786 70931079 - Rb1 protein_coding retained_intron MGP_C57BL6NJ_T0040552.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 70968724 70969965 - Rb1 protein_coding processed_transcript MGP_C57BL6NJ_T0040553.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 70993289 70995211 - Rb1 protein_coding retained_intron MGP_C57BL6NJ_T0040554.1 MGP_C57BL6NJ_G0021961.1 mouse_genomes_project 14 71013702 71063527 - MGP_C57BL6NJ_P0040554 Rb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0002651.1 MGP_C57BL6NJ_G0002533.1 mouse_genomes_project 14 50550836 50550899 + MGP_C57BL6NJ_P0002651 Traj56 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040332.1 MGP_C57BL6NJ_G0021887.1 mouse_genomes_project 14 63067727 63178966 + MGP_C57BL6NJ_P0040332 Scara5 protein_coding protein_coding MGP_C57BL6NJ_T0040333.1 MGP_C57BL6NJ_G0021887.1 mouse_genomes_project 14 63067761 63153989 + MGP_C57BL6NJ_P0040333 Scara5 protein_coding protein_coding MGP_C57BL6NJ_T0040334.1 MGP_C57BL6NJ_G0021887.1 mouse_genomes_project 14 63077799 63153837 + Scara5 protein_coding processed_transcript MGP_C57BL6NJ_T0040795.1 MGP_C57BL6NJ_G0022058.1 mouse_genomes_project 14 121014343 121065851 - MGP_C57BL6NJ_P0040795 Dzip1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0002669.1 MGP_C57BL6NJ_G0002549.1 mouse_genomes_project 14 50575378 50575438 + MGP_C57BL6NJ_P0002669 Traj37 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039846.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50914856 50927172 - MGP_C57BL6NJ_P0039846 Prmt5 protein_coding protein_coding MGP_C57BL6NJ_T0039847.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50918664 50921120 - MGP_C57BL6NJ_P0039847 Prmt5 protein_coding protein_coding MGP_C57BL6NJ_T0039848.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50918869 50927082 - MGP_C57BL6NJ_P0039848 Prmt5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039849.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50921036 50927040 - Prmt5 protein_coding retained_intron MGP_C57BL6NJ_T0039850.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50921600 50927117 - Prmt5 protein_coding retained_intron MGP_C57BL6NJ_T0039851.1 MGP_C57BL6NJ_G0021714.1 mouse_genomes_project 14 50925797 50927008 - Prmt5 protein_coding processed_transcript MGP_C57BL6NJ_T0040781.1 MGP_C57BL6NJ_G0022050.1 mouse_genomes_project 14 118895466 120008116 + MGP_C57BL6NJ_P0040781 Gpc6 protein_coding protein_coding MGP_C57BL6NJ_T0040782.1 MGP_C57BL6NJ_G0022050.1 mouse_genomes_project 14 118895484 119637213 + Gpc6 protein_coding retained_intron MGP_C57BL6NJ_T0040783.1 MGP_C57BL6NJ_G0022050.1 mouse_genomes_project 14 118895599 120003953 + MGP_C57BL6NJ_P0040783 Gpc6 protein_coding protein_coding MGP_C57BL6NJ_T0040784.1 MGP_C57BL6NJ_G0022050.1 mouse_genomes_project 14 118895700 120002815 + MGP_C57BL6NJ_P0040784 Gpc6 protein_coding protein_coding MGP_C57BL6NJ_T0040451.1 MGP_C57BL6NJ_G0021933.1 mouse_genomes_project 14 67636619 67676033 + MGP_C57BL6NJ_P0040451 Bin3 protein_coding protein_coding MGP_C57BL6NJ_T0013355.1 MGP_C57BL6NJ_G0011400.1 mouse_genomes_project 14 99590372 99590712 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013336.1 MGP_C57BL6NJ_G0011381.1 mouse_genomes_project 14 54903964 54904322 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010182.1 MGP_C57BL6NJ_G0008267.1 mouse_genomes_project 14 19037157 19037242 + Mir3075 miRNA miRNA MGP_C57BL6NJ_T0039611.1 MGP_C57BL6NJ_G0021651.1 mouse_genomes_project 14 46571546 46598568 + MGP_C57BL6NJ_P0039611 Parp2 protein_coding protein_coding MGP_C57BL6NJ_T0039657.1 MGP_C57BL6NJ_G0021674.1 mouse_genomes_project 14 47317875 47326616 + MGP_C57BL6NJ_P0039657 protein_coding protein_coding MGP_C57BL6NJ_T0039658.1 MGP_C57BL6NJ_G0021674.1 mouse_genomes_project 14 47317875 47326616 + MGP_C57BL6NJ_P0039658 protein_coding protein_coding MGP_C57BL6NJ_T0039659.1 MGP_C57BL6NJ_G0021674.1 mouse_genomes_project 14 47317875 47326613 + MGP_C57BL6NJ_P0039659 protein_coding protein_coding MGP_C57BL6NJ_T0039661.1 MGP_C57BL6NJ_G0021674.1 mouse_genomes_project 14 47317912 47326615 + MGP_C57BL6NJ_P0039661 protein_coding protein_coding MGP_C57BL6NJ_T0099905.1 MGP_C57BL6NJ_G0037951.1 mouse_genomes_project 14 21368926 21369035 + Gm22485 snRNA snRNA MGP_C57BL6NJ_T0039294.1 MGP_C57BL6NJ_G0021530.1 mouse_genomes_project 14 26732712 26735125 - MGP_C57BL6NJ_P0039294 Slc18a3 protein_coding protein_coding MGP_C57BL6NJ_T0038827.1 MGP_C57BL6NJ_G0021416.1 mouse_genomes_project 14 13569556 13598512 - MGP_C57BL6NJ_P0038827 Ecd protein_coding protein_coding MGP_C57BL6NJ_T0003720.1 MGP_C57BL6NJ_G0003366.1 mouse_genomes_project 14 61402547 61407468 - 4930471C04Rik antisense antisense MGP_C57BL6NJ_T0002682.1 MGP_C57BL6NJ_G0002562.1 mouse_genomes_project 14 50589872 50589932 + MGP_C57BL6NJ_P0002682 Traj23 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0010198.1 MGP_C57BL6NJ_G0008283.1 mouse_genomes_project 14 52677719 52677787 - Mir6949 miRNA miRNA MGP_C57BL6NJ_T0099946.1 MGP_C57BL6NJ_G0037992.1 mouse_genomes_project 14 106995525 106995656 - Gm23459 snRNA snRNA MGP_C57BL6NJ_T0002665.1 MGP_C57BL6NJ_G0002545.1 mouse_genomes_project 14 50570131 50570186 + MGP_C57BL6NJ_P0002665 Traj41 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039581.1 MGP_C57BL6NJ_G0021626.1 mouse_genomes_project 14 45851664 45852465 + MGP_C57BL6NJ_P0039581 Olfr727 protein_coding protein_coding MGP_C57BL6NJ_T0039393.1 MGP_C57BL6NJ_G0021571.1 mouse_genomes_project 14 31675293 31695765 - MGP_C57BL6NJ_P0039393 Cdhr1 protein_coding protein_coding MGP_C57BL6NJ_T0040526.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70866441 70882886 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0040527.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70866441 70895033 + MGP_C57BL6NJ_P0040527 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040528.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870209 70897415 + MGP_C57BL6NJ_P0040528 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040529.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870231 70899203 + MGP_C57BL6NJ_P0040529 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040530.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870380 70882885 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0040531.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870396 70895084 + MGP_C57BL6NJ_P0040531 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040532.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870536 70935656 + MGP_C57BL6NJ_P0040532 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040533.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870665 70897479 + MGP_C57BL6NJ_P0040533 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040534.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870682 70896780 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0040535.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870690 70882465 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0040536.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870735 70916743 + MGP_C57BL6NJ_P0040536 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040537.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870749 70915858 + MGP_C57BL6NJ_P0040537 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040538.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870772 70916914 + MGP_C57BL6NJ_P0040538 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040539.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870783 70882839 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0040540.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870783 70899536 + MGP_C57BL6NJ_P0040540 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040541.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870830 70897546 + MGP_C57BL6NJ_P0040541 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040542.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70870851 70916756 + MGP_C57BL6NJ_P0040542 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040543.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70871073 70894665 + MGP_C57BL6NJ_P0040543 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040544.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70894635 70915298 + MGP_C57BL6NJ_P0040544 Rcbtb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040545.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70894635 70915295 + MGP_C57BL6NJ_P0040545 Rcbtb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040546.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70906579 70915214 + MGP_C57BL6NJ_P0040546 Rcbtb2 protein_coding protein_coding MGP_C57BL6NJ_T0040547.1 MGP_C57BL6NJ_G0021960.1 mouse_genomes_project 14 70907146 70915378 + Rcbtb2 protein_coding retained_intron MGP_C57BL6NJ_T0039227.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25717696 25815283 - MGP_C57BL6NJ_P0039227 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039231.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25765927 25815349 - MGP_C57BL6NJ_P0039231 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039232.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25774422 25815369 - MGP_C57BL6NJ_P0039232 Hacl1 protein_coding protein_coding MGP_C57BL6NJ_T0039233.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25774861 25783320 - Hacl1 protein_coding processed_transcript MGP_C57BL6NJ_T0039234.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25775165 25779337 - Hacl1 protein_coding processed_transcript MGP_C57BL6NJ_T0039235.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25775207 25815317 - MGP_C57BL6NJ_P0039235 Hacl1 protein_coding protein_coding MGP_C57BL6NJ_T0039236.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25775207 25815283 - MGP_C57BL6NJ_P0039236 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039237.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25775207 25815283 - MGP_C57BL6NJ_P0039237 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039238.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25775207 25815283 - MGP_C57BL6NJ_P0039238 Hacl1 protein_coding protein_coding MGP_C57BL6NJ_T0039239.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25796034 25815577 - MGP_C57BL6NJ_P0039239 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039240.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25799375 25815662 - MGP_C57BL6NJ_P0039240 Hacl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039241.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25800187 25815351 - Hacl1 protein_coding retained_intron MGP_C57BL6NJ_T0039242.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25808667 25815316 - Hacl1 protein_coding retained_intron MGP_C57BL6NJ_T0039243.1 MGP_C57BL6NJ_G0021516.1 mouse_genomes_project 14 25808806 25815691 - Hacl1 protein_coding retained_intron MGP_C57BL6NJ_T0040106.1 MGP_C57BL6NJ_G0021795.1 mouse_genomes_project 14 53010470 53144829 + MGP_C57BL6NJ_P0040106 Rnf17 protein_coding protein_coding MGP_C57BL6NJ_T0002719.1 MGP_C57BL6NJ_G0002597.1 mouse_genomes_project 14 50555469 50555523 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0040102.1 MGP_C57BL6NJ_G0021791.1 mouse_genomes_project 14 52806803 52812861 - MGP_C57BL6NJ_P0040102 Gzmf protein_coding protein_coding MGP_C57BL6NJ_T0010207.1 MGP_C57BL6NJ_G0008292.1 mouse_genomes_project 14 61909586 61909673 + Mir3078 miRNA miRNA MGP_C57BL6NJ_T0040834.1 MGP_C57BL6NJ_G0022075.1 mouse_genomes_project 14 124678505 124930190 + MGP_C57BL6NJ_P0040834 Clybl protein_coding protein_coding MGP_C57BL6NJ_T0006830.1 MGP_C57BL6NJ_G0005647.1 mouse_genomes_project 14 18140941 18141664 + 4930428N03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006831.1 MGP_C57BL6NJ_G0005647.1 mouse_genomes_project 14 18140962 18151146 + 4930428N03Rik lincRNA lincRNA MGP_C57BL6NJ_T0040652.1 MGP_C57BL6NJ_G0022001.1 mouse_genomes_project 14 77686144 77711284 + MGP_C57BL6NJ_P0040652 Mtrf1 protein_coding protein_coding MGP_C57BL6NJ_T0040412.1 MGP_C57BL6NJ_G0021912.1 mouse_genomes_project 14 65689012 65738088 - MGP_C57BL6NJ_P0040412 Nefm protein_coding protein_coding MGP_C57BL6NJ_T0040414.1 MGP_C57BL6NJ_G0021912.1 mouse_genomes_project 14 65732511 65738088 - MGP_C57BL6NJ_P0040414 Nefm protein_coding protein_coding MGP_C57BL6NJ_T0003738.1 MGP_C57BL6NJ_G0003379.1 mouse_genomes_project 14 124348496 124350043 - 1810041H14Rik antisense antisense MGP_C57BL6NJ_T0003739.1 MGP_C57BL6NJ_G0003379.1 mouse_genomes_project 14 124348582 124350277 - 1810041H14Rik antisense antisense MGP_C57BL6NJ_T0003740.1 MGP_C57BL6NJ_G0003379.1 mouse_genomes_project 14 124348630 124351182 - 1810041H14Rik antisense antisense MGP_C57BL6NJ_T0039130.1 MGP_C57BL6NJ_G0021496.1 mouse_genomes_project 14 25048690 25064488 - MGP_C57BL6NJ_P0039130 Itih1 protein_coding protein_coding MGP_C57BL6NJ_T0039131.1 MGP_C57BL6NJ_G0021496.1 mouse_genomes_project 14 25048690 25064476 - MGP_C57BL6NJ_P0039131 Itih1 protein_coding protein_coding MGP_C57BL6NJ_T0039132.1 MGP_C57BL6NJ_G0021496.1 mouse_genomes_project 14 25063888 25064485 - Itih1 protein_coding retained_intron MGP_C57BL6NJ_T0039652.1 MGP_C57BL6NJ_G0021669.1 mouse_genomes_project 14 46967489 46969255 - MGP_C57BL6NJ_P0039652 Rnase1 protein_coding protein_coding MGP_C57BL6NJ_T0039855.1 MGP_C57BL6NJ_G0021718.1 mouse_genomes_project 14 51052241 51056495 + MGP_C57BL6NJ_P0039855 Psmb11 protein_coding protein_coding MGP_C57BL6NJ_T0039579.1 MGP_C57BL6NJ_G0021625.1 mouse_genomes_project 14 45845016 45851842 + MGP_C57BL6NJ_P0039579 protein_coding protein_coding MGP_C57BL6NJ_T0039580.1 MGP_C57BL6NJ_G0021625.1 mouse_genomes_project 14 45851357 45852466 + MGP_C57BL6NJ_P0039580 protein_coding protein_coding MGP_C57BL6NJ_T0003675.1 MGP_C57BL6NJ_G0003330.1 mouse_genomes_project 14 13906967 13909993 + 2810402E24Rik antisense antisense MGP_C57BL6NJ_T0013344.1 MGP_C57BL6NJ_G0011389.1 mouse_genomes_project 14 72570797 72584564 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038691.1 MGP_C57BL6NJ_G0021369.1 mouse_genomes_project 14 298376 328318 - MGP_C57BL6NJ_P0038691 Dnase1l3 protein_coding protein_coding MGP_C57BL6NJ_T0038692.1 MGP_C57BL6NJ_G0021369.1 mouse_genomes_project 14 309706 311041 - Dnase1l3 protein_coding processed_transcript MGP_C57BL6NJ_T0040097.1 MGP_C57BL6NJ_G0021786.1 mouse_genomes_project 14 52698087 52700781 - MGP_C57BL6NJ_P0040097 Ctsg protein_coding protein_coding MGP_C57BL6NJ_T0006850.1 MGP_C57BL6NJ_G0005660.1 mouse_genomes_project 14 41026980 41028856 - A530076I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0040216.1 MGP_C57BL6NJ_G0021835.1 mouse_genomes_project 14 57396343 57399061 + MGP_C57BL6NJ_P0040216 Amer2 protein_coding protein_coding MGP_C57BL6NJ_T0003679.1 MGP_C57BL6NJ_G0003332.1 mouse_genomes_project 14 16441612 16503561 - Gm10248 antisense antisense MGP_C57BL6NJ_T0038915.1 MGP_C57BL6NJ_G0021440.1 mouse_genomes_project 14 15073825 15119679 + MGP_C57BL6NJ_P0038915 Samd8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038916.1 MGP_C57BL6NJ_G0021440.1 mouse_genomes_project 14 15073884 15119618 + MGP_C57BL6NJ_P0038916 Samd8 protein_coding protein_coding MGP_C57BL6NJ_T0038917.1 MGP_C57BL6NJ_G0021440.1 mouse_genomes_project 14 15118248 15119352 + Samd8 protein_coding retained_intron MGP_C57BL6NJ_T0099015.1 MGP_C57BL6NJ_G0037079.1 mouse_genomes_project 14 120959825 120959948 - n-R5s51 rRNA rRNA MGP_C57BL6NJ_T0006896.1 MGP_C57BL6NJ_G0005694.1 mouse_genomes_project 14 78155228 78292197 + Gm6999 lincRNA lincRNA MGP_C57BL6NJ_T0039216.1 MGP_C57BL6NJ_G0021511.1 mouse_genomes_project 14 25481268 25518229 + MGP_C57BL6NJ_P0039216 Capn7 protein_coding protein_coding MGP_C57BL6NJ_T0039217.1 MGP_C57BL6NJ_G0021511.1 mouse_genomes_project 14 25481305 25518231 + MGP_C57BL6NJ_P0039217 Capn7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039218.1 MGP_C57BL6NJ_G0021511.1 mouse_genomes_project 14 25481337 25518229 + MGP_C57BL6NJ_P0039218 Capn7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038977.1 MGP_C57BL6NJ_G0021452.1 mouse_genomes_project 14 19216963 19274365 - MGP_C57BL6NJ_P0038977 Zcchc24 protein_coding protein_coding MGP_C57BL6NJ_T0038978.1 MGP_C57BL6NJ_G0021452.1 mouse_genomes_project 14 19216965 19225117 - Zcchc24 protein_coding retained_intron MGP_C57BL6NJ_T0040282.1 MGP_C57BL6NJ_G0021864.1 mouse_genomes_project 14 60640514 60685447 - MGP_C57BL6NJ_P0040282 Blk protein_coding protein_coding MGP_C57BL6NJ_T0040715.1 MGP_C57BL6NJ_G0022028.1 mouse_genomes_project 14 102123475 102123910 - MGP_C57BL6NJ_P0040715 Gm9922 protein_coding protein_coding MGP_C57BL6NJ_T0013327.1 MGP_C57BL6NJ_G0011372.1 mouse_genomes_project 14 49714634 49715381 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010201.1 MGP_C57BL6NJ_G0008286.1 mouse_genomes_project 14 58751977 58752070 - Mir16-1 miRNA miRNA MGP_C57BL6NJ_T0040694.1 MGP_C57BL6NJ_G0022019.1 mouse_genomes_project 14 99206941 99239862 + MGP_C57BL6NJ_P0040694 Bora protein_coding protein_coding MGP_C57BL6NJ_T0013301.1 MGP_C57BL6NJ_G0011346.1 mouse_genomes_project 14 23193448 23193940 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099952.1 MGP_C57BL6NJ_G0037998.1 mouse_genomes_project 14 123109707 123109791 + Gm25781 snRNA snRNA MGP_C57BL6NJ_T0040206.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 56641163 57196273 - MGP_C57BL6NJ_P0040206 Atp8a2 protein_coding protein_coding MGP_C57BL6NJ_T0040207.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 57038425 57105596 - MGP_C57BL6NJ_P0040207 Atp8a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040208.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 57053253 57222759 - MGP_C57BL6NJ_P0040208 Atp8a2 protein_coding protein_coding MGP_C57BL6NJ_T0040209.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 57105295 57196425 - MGP_C57BL6NJ_P0040209 Atp8a2 protein_coding protein_coding MGP_C57BL6NJ_T0040210.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 57105354 57107481 - MGP_C57BL6NJ_P0040210 Atp8a2 protein_coding protein_coding MGP_C57BL6NJ_T0040213.1 MGP_C57BL6NJ_G0021831.1 mouse_genomes_project 14 57207568 57222723 - Atp8a2 protein_coding processed_transcript MGP_C57BL6NJ_T0101218.1 MGP_C57BL6NJ_G0039264.1 mouse_genomes_project 14 31826929 31827062 + Gm22469 snoRNA snoRNA MGP_C57BL6NJ_T0038787.1 MGP_C57BL6NJ_G0021404.1 mouse_genomes_project 14 11267802 11274200 - MGP_C57BL6NJ_P0038787 Rpl15 protein_coding protein_coding MGP_C57BL6NJ_T0038788.1 MGP_C57BL6NJ_G0021404.1 mouse_genomes_project 14 11272436 11274524 - MGP_C57BL6NJ_P0038788 Rpl15 protein_coding protein_coding MGP_C57BL6NJ_T0040343.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63403012 63416071 + MGP_C57BL6NJ_P0040343 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040344.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63403171 63410169 + MGP_C57BL6NJ_P0040344 Clu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040345.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63403183 63407060 + Clu protein_coding retained_intron MGP_C57BL6NJ_T0040346.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63404247 63410484 + MGP_C57BL6NJ_P0040346 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040347.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63405149 63410388 + MGP_C57BL6NJ_P0040347 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040348.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63405331 63410365 + MGP_C57BL6NJ_P0040348 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040349.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63405580 63410300 + MGP_C57BL6NJ_P0040349 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040350.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63405825 63409485 + MGP_C57BL6NJ_P0040350 Clu protein_coding protein_coding MGP_C57BL6NJ_T0040351.1 MGP_C57BL6NJ_G0021892.1 mouse_genomes_project 14 63409191 63410497 + Clu protein_coding retained_intron MGP_C57BL6NJ_T0040394.1 MGP_C57BL6NJ_G0021907.1 mouse_genomes_project 14 64775924 64988819 + MGP_C57BL6NJ_P0040394 Ebf2 protein_coding protein_coding MGP_C57BL6NJ_T0040395.1 MGP_C57BL6NJ_G0021907.1 mouse_genomes_project 14 64776218 64989960 + MGP_C57BL6NJ_P0040395 Ebf2 protein_coding protein_coding MGP_C57BL6NJ_T0040396.1 MGP_C57BL6NJ_G0021907.1 mouse_genomes_project 14 64776235 64779146 + Ebf2 protein_coding retained_intron MGP_C57BL6NJ_T0040397.1 MGP_C57BL6NJ_G0021907.1 mouse_genomes_project 14 64777276 64987729 + MGP_C57BL6NJ_P0040397 Ebf2 protein_coding protein_coding MGP_C57BL6NJ_T0039788.1 MGP_C57BL6NJ_G0021697.1 mouse_genomes_project 14 48409149 48414301 - Sall2 protein_coding processed_transcript MGP_C57BL6NJ_T0039789.1 MGP_C57BL6NJ_G0021697.1 mouse_genomes_project 14 48409149 48428900 - MGP_C57BL6NJ_P0039789 Sall2 protein_coding protein_coding MGP_C57BL6NJ_T0006853.1 MGP_C57BL6NJ_G0005663.1 mouse_genomes_project 14 41979059 41991068 + E130120K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0039219.1 MGP_C57BL6NJ_G0021512.1 mouse_genomes_project 14 25506124 25584100 - MGP_C57BL6NJ_P0039219 Sh3bp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039220.1 MGP_C57BL6NJ_G0021512.1 mouse_genomes_project 14 25520029 25563918 - MGP_C57BL6NJ_P0039220 Sh3bp5 protein_coding protein_coding MGP_C57BL6NJ_T0039221.1 MGP_C57BL6NJ_G0021512.1 mouse_genomes_project 14 25520029 25584087 - MGP_C57BL6NJ_P0039221 Sh3bp5 protein_coding protein_coding MGP_C57BL6NJ_T0039222.1 MGP_C57BL6NJ_G0021512.1 mouse_genomes_project 14 25523839 25553626 - Sh3bp5 protein_coding processed_transcript MGP_C57BL6NJ_T0002740.1 MGP_C57BL6NJ_G0002614.1 mouse_genomes_project 14 48760638 48761086 + MGP_C57BL6NJ_P0002740 Trav6-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0099928.1 MGP_C57BL6NJ_G0037974.1 mouse_genomes_project 14 67991131 67991233 - Gm24890 snRNA snRNA MGP_C57BL6NJ_T0003732.1 MGP_C57BL6NJ_G0003374.1 mouse_genomes_project 14 70269521 70286017 + Gm16549 antisense antisense MGP_C57BL6NJ_T0040242.1 MGP_C57BL6NJ_G0021845.1 mouse_genomes_project 14 58640801 58671752 - MGP_C57BL6NJ_P0040242 Spryd7 protein_coding protein_coding MGP_C57BL6NJ_T0040243.1 MGP_C57BL6NJ_G0021845.1 mouse_genomes_project 14 58643113 58671624 - MGP_C57BL6NJ_P0040243 Spryd7 protein_coding protein_coding MGP_C57BL6NJ_T0002776.1 MGP_C57BL6NJ_G0002646.1 mouse_genomes_project 14 49837588 49838160 + MGP_C57BL6NJ_P0002776 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040082.1 MGP_C57BL6NJ_G0021774.1 mouse_genomes_project 14 52369944 52379082 + MGP_C57BL6NJ_P0040082 Nfatc4 protein_coding protein_coding MGP_C57BL6NJ_T0040083.1 MGP_C57BL6NJ_G0021774.1 mouse_genomes_project 14 52369944 52379082 + MGP_C57BL6NJ_P0040083 Nfatc4 protein_coding protein_coding MGP_C57BL6NJ_T0040375.1 MGP_C57BL6NJ_G0021900.1 mouse_genomes_project 14 64128063 64232726 + MGP_C57BL6NJ_P0040375 Adra1a protein_coding protein_coding MGP_C57BL6NJ_T0040376.1 MGP_C57BL6NJ_G0021900.1 mouse_genomes_project 14 64128070 64232593 + MGP_C57BL6NJ_P0040376 Adra1a protein_coding protein_coding MGP_C57BL6NJ_T0040377.1 MGP_C57BL6NJ_G0021900.1 mouse_genomes_project 14 64128121 64133146 + Adra1a protein_coding retained_intron MGP_C57BL6NJ_T0040378.1 MGP_C57BL6NJ_G0021900.1 mouse_genomes_project 14 64128153 64229248 + MGP_C57BL6NJ_P0040378 Adra1a protein_coding protein_coding MGP_C57BL6NJ_T0040379.1 MGP_C57BL6NJ_G0021900.1 mouse_genomes_project 14 64128368 64232005 + MGP_C57BL6NJ_P0040379 Adra1a protein_coding protein_coding MGP_C57BL6NJ_T0010219.1 MGP_C57BL6NJ_G0008304.1 mouse_genomes_project 14 85892953 85893044 - Gm23438 miRNA miRNA MGP_C57BL6NJ_T0003665.1 MGP_C57BL6NJ_G0003326.1 mouse_genomes_project 14 4512617 4528224 - Gm3848 antisense antisense MGP_C57BL6NJ_T0003666.1 MGP_C57BL6NJ_G0003326.1 mouse_genomes_project 14 4527198 4528209 - Gm3848 antisense antisense MGP_C57BL6NJ_T0039510.1 MGP_C57BL6NJ_G0021610.1 mouse_genomes_project 14 43055369 43091541 - MGP_C57BL6NJ_P0039510 Atg14 protein_coding protein_coding MGP_C57BL6NJ_T0038700.1 MGP_C57BL6NJ_G0021374.1 mouse_genomes_project 14 565270 574671 + MGP_C57BL6NJ_P0038700 Kctd6 protein_coding protein_coding MGP_C57BL6NJ_T0038701.1 MGP_C57BL6NJ_G0021374.1 mouse_genomes_project 14 565612 574665 + MGP_C57BL6NJ_P0038701 Kctd6 protein_coding protein_coding MGP_C57BL6NJ_T0002867.1 MGP_C57BL6NJ_G0002721.1 mouse_genomes_project 14 50124360 50124515 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0038775.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9257775 9327048 + MGP_C57BL6NJ_P0038775 Top2b protein_coding protein_coding MGP_C57BL6NJ_T0038776.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9284237 9288087 + Top2b protein_coding retained_intron MGP_C57BL6NJ_T0038777.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9306198 9313291 + MGP_C57BL6NJ_P0038777 Top2b protein_coding protein_coding MGP_C57BL6NJ_T0038778.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9308343 9312970 + MGP_C57BL6NJ_P0038778 Top2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038779.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9309977 9321698 + MGP_C57BL6NJ_P0038779 Top2b protein_coding protein_coding MGP_C57BL6NJ_T0038780.1 MGP_C57BL6NJ_G0021400.1 mouse_genomes_project 14 9319548 9324766 + Top2b protein_coding retained_intron MGP_C57BL6NJ_T0038842.1 MGP_C57BL6NJ_G0021421.1 mouse_genomes_project 14 13709931 13735320 - MGP_C57BL6NJ_P0038842 Anxa7 protein_coding protein_coding MGP_C57BL6NJ_T0038843.1 MGP_C57BL6NJ_G0021421.1 mouse_genomes_project 14 13709931 13735320 - MGP_C57BL6NJ_P0038843 Anxa7 protein_coding protein_coding MGP_C57BL6NJ_T0038844.1 MGP_C57BL6NJ_G0021421.1 mouse_genomes_project 14 13709948 13735137 - MGP_C57BL6NJ_P0038844 Anxa7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040261.1 MGP_C57BL6NJ_G0021854.1 mouse_genomes_project 14 60050350 60180654 + MGP_C57BL6NJ_P0040261 Wdfy2 protein_coding protein_coding MGP_C57BL6NJ_T0040298.1 MGP_C57BL6NJ_G0021870.1 mouse_genomes_project 14 61238382 61245441 + MGP_C57BL6NJ_P0040298 Sox7 protein_coding protein_coding MGP_C57BL6NJ_T0001035.1 MGP_C57BL6NJ_G0000944.1 mouse_genomes_project 14 15260894 15281193 + TEC TEC MGP_C57BL6NJ_T0002756.1 MGP_C57BL6NJ_G0002629.1 mouse_genomes_project 14 49235181 49236083 + MGP_C57BL6NJ_P0002756 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039422.1 MGP_C57BL6NJ_G0021585.1 mouse_genomes_project 14 39116266 39116890 - MGP_C57BL6NJ_P0039422 Ang6 protein_coding protein_coding MGP_C57BL6NJ_T0039423.1 MGP_C57BL6NJ_G0021585.1 mouse_genomes_project 14 39116428 39116872 - MGP_C57BL6NJ_P0039423 Ang6 protein_coding protein_coding MGP_C57BL6NJ_T0099924.1 MGP_C57BL6NJ_G0037970.1 mouse_genomes_project 14 53501861 53501920 - Gm22218 snRNA snRNA MGP_C57BL6NJ_T0040393.1 MGP_C57BL6NJ_G0021906.1 mouse_genomes_project 14 64541895 64604428 - MGP_C57BL6NJ_P0040393 Ppp2r2a protein_coding protein_coding MGP_C57BL6NJ_T0001060.1 MGP_C57BL6NJ_G0000969.1 mouse_genomes_project 14 116578128 116578392 - TEC TEC MGP_C57BL6NJ_T0010190.1 MGP_C57BL6NJ_G0008275.1 mouse_genomes_project 14 41018323 41018416 - Mir5131 miRNA miRNA MGP_C57BL6NJ_T0039791.1 MGP_C57BL6NJ_G0021699.1 mouse_genomes_project 14 48471357 48472299 - MGP_C57BL6NJ_P0039791 Olfr1512 protein_coding protein_coding MGP_C57BL6NJ_T0039323.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27731501 27806679 - MGP_C57BL6NJ_P0039323 Mapk8 protein_coding protein_coding MGP_C57BL6NJ_T0039324.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27734652 27806666 - MGP_C57BL6NJ_P0039324 Mapk8 protein_coding protein_coding MGP_C57BL6NJ_T0039325.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27735708 27806663 - MGP_C57BL6NJ_P0039325 Mapk8 protein_coding protein_coding MGP_C57BL6NJ_T0039326.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27735773 27766012 - MGP_C57BL6NJ_P0039326 Mapk8 protein_coding protein_coding MGP_C57BL6NJ_T0039327.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27735908 27743912 - Mapk8 protein_coding processed_transcript MGP_C57BL6NJ_T0039328.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27735911 27765995 - MGP_C57BL6NJ_P0039328 Mapk8 protein_coding protein_coding MGP_C57BL6NJ_T0039329.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27737526 27742832 - Mapk8 protein_coding retained_intron MGP_C57BL6NJ_T0039330.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27744541 27806679 - Mapk8 protein_coding retained_intron MGP_C57BL6NJ_T0039331.1 MGP_C57BL6NJ_G0021540.1 mouse_genomes_project 14 27760687 27806678 - Mapk8 protein_coding retained_intron MGP_C57BL6NJ_T0099922.1 MGP_C57BL6NJ_G0037968.1 mouse_genomes_project 14 52215800 52215884 - Gm25887 snRNA snRNA MGP_C57BL6NJ_T0003684.1 MGP_C57BL6NJ_G0003336.1 mouse_genomes_project 14 20430278 20441061 - Arf4os antisense antisense MGP_C57BL6NJ_T0040169.1 MGP_C57BL6NJ_G0021819.1 mouse_genomes_project 14 54868106 54910493 + MGP_C57BL6NJ_P0040169 Fgf9 protein_coding protein_coding MGP_C57BL6NJ_T0040170.1 MGP_C57BL6NJ_G0021819.1 mouse_genomes_project 14 54870897 54908367 + MGP_C57BL6NJ_P0040170 Fgf9 protein_coding protein_coding MGP_C57BL6NJ_T0040171.1 MGP_C57BL6NJ_G0021819.1 mouse_genomes_project 14 54873326 54908367 + MGP_C57BL6NJ_P0040171 Fgf9 protein_coding protein_coding MGP_C57BL6NJ_T0040172.1 MGP_C57BL6NJ_G0021819.1 mouse_genomes_project 14 54874752 54907585 + MGP_C57BL6NJ_P0040172 Fgf9 protein_coding protein_coding MGP_C57BL6NJ_T0001056.1 MGP_C57BL6NJ_G0000965.1 mouse_genomes_project 14 88508933 88509368 + TEC TEC MGP_C57BL6NJ_T0011635.1 MGP_C57BL6NJ_G0009720.1 mouse_genomes_project 14 58749227 58749341 + Gm27845 misc_RNA misc_RNA MGP_C57BL6NJ_T0040696.1 MGP_C57BL6NJ_G0022021.1 mouse_genomes_project 14 99265609 99436224 + MGP_C57BL6NJ_P0040696 Pibf1 protein_coding protein_coding MGP_C57BL6NJ_T0017893.1 MGP_C57BL6NJ_G0015678.1 mouse_genomes_project 14 121257351 121275309 + Gm16835 processed_transcript processed_transcript MGP_C57BL6NJ_T0102848.1 MGP_C57BL6NJ_G0040642.1 mouse_genomes_project 14 39073212 39073654 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0038845.1 MGP_C57BL6NJ_G0021422.1 mouse_genomes_project 14 13738027 13754422 - MGP_C57BL6NJ_P0038845 Mss51 protein_coding protein_coding MGP_C57BL6NJ_T0038823.1 MGP_C57BL6NJ_G0021412.1 mouse_genomes_project 14 13318710 13326237 - MGP_C57BL6NJ_P0038823 Saysd1 protein_coding protein_coding MGP_C57BL6NJ_T0010196.1 MGP_C57BL6NJ_G0008281.1 mouse_genomes_project 14 51404596 51404679 - Mir208a miRNA miRNA MGP_C57BL6NJ_T0040099.1 MGP_C57BL6NJ_G0021788.1 mouse_genomes_project 14 52722179 52725232 - MGP_C57BL6NJ_P0040099 Gzmd protein_coding protein_coding MGP_C57BL6NJ_T0039841.1 MGP_C57BL6NJ_G0021712.1 mouse_genomes_project 14 50870601 50877935 + MGP_C57BL6NJ_P0039841 Lrp10 protein_coding protein_coding MGP_C57BL6NJ_T0013353.1 MGP_C57BL6NJ_G0011398.1 mouse_genomes_project 14 99151247 99151568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040598.1 MGP_C57BL6NJ_G0021978.1 mouse_genomes_project 14 73642164 73694015 - MGP_C57BL6NJ_P0040598 Cog3 protein_coding protein_coding MGP_C57BL6NJ_T0040625.1 MGP_C57BL6NJ_G0021988.1 mouse_genomes_project 14 75134846 75213785 + MGP_C57BL6NJ_P0040625 Ccdc122 protein_coding protein_coding MGP_C57BL6NJ_T0040626.1 MGP_C57BL6NJ_G0021988.1 mouse_genomes_project 14 75134856 75213785 + MGP_C57BL6NJ_P0040626 Ccdc122 protein_coding protein_coding MGP_C57BL6NJ_T0040627.1 MGP_C57BL6NJ_G0021988.1 mouse_genomes_project 14 75134938 75213276 + MGP_C57BL6NJ_P0040627 Ccdc122 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040628.1 MGP_C57BL6NJ_G0021988.1 mouse_genomes_project 14 75212555 75213838 + Ccdc122 protein_coding processed_transcript MGP_C57BL6NJ_T0010214.1 MGP_C57BL6NJ_G0008299.1 mouse_genomes_project 14 70934575 70934664 - Mir687 miRNA miRNA MGP_C57BL6NJ_T0099950.1 MGP_C57BL6NJ_G0037996.1 mouse_genomes_project 14 116754175 116754281 - Gm24073 snRNA snRNA MGP_C57BL6NJ_T0040422.1 MGP_C57BL6NJ_G0021919.1 mouse_genomes_project 14 66877001 66881026 + MGP_C57BL6NJ_P0040422 Nkx3-1 protein_coding protein_coding MGP_C57BL6NJ_T0003722.1 MGP_C57BL6NJ_G0003368.1 mouse_genomes_project 14 64853247 64863071 - Gm6878 antisense antisense MGP_C57BL6NJ_T0038781.1 MGP_C57BL6NJ_G0021401.1 mouse_genomes_project 14 9327102 9479579 - MGP_C57BL6NJ_P0038781 Rarb protein_coding protein_coding MGP_C57BL6NJ_T0039543.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44278201 44287770 - MGP_C57BL6NJ_P0039543 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039544.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44278693 44285404 - MGP_C57BL6NJ_P0039544 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039545.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44278693 44290036 - MGP_C57BL6NJ_P0039545 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039546.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44279438 44284464 - MGP_C57BL6NJ_P0039546 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039547.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44279475 44290167 - MGP_C57BL6NJ_P0039547 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039548.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44279827 44290031 - MGP_C57BL6NJ_P0039548 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039549.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44281872 44290031 - MGP_C57BL6NJ_P0039549 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039550.1 MGP_C57BL6NJ_G0021614.1 mouse_genomes_project 14 44281922 44288045 - MGP_C57BL6NJ_P0039550 Otx2 protein_coding protein_coding MGP_C57BL6NJ_T0039396.1 MGP_C57BL6NJ_G0021573.1 mouse_genomes_project 14 31718759 31735837 - MGP_C57BL6NJ_P0039396 Ghitm protein_coding protein_coding MGP_C57BL6NJ_T0039397.1 MGP_C57BL6NJ_G0021573.1 mouse_genomes_project 14 31718759 31736020 - MGP_C57BL6NJ_P0039397 Ghitm protein_coding protein_coding MGP_C57BL6NJ_T0002794.1 MGP_C57BL6NJ_G0002662.1 mouse_genomes_project 14 50133172 50135168 + MGP_C57BL6NJ_P0002794 Trav3-4 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0003691.1 MGP_C57BL6NJ_G0003343.1 mouse_genomes_project 14 33676045 33740282 + Nrg3os antisense antisense MGP_C57BL6NJ_T0003713.1 MGP_C57BL6NJ_G0003361.1 mouse_genomes_project 14 54250245 54254337 - Ift88os antisense antisense MGP_C57BL6NJ_T0102854.1 MGP_C57BL6NJ_G0040648.1 mouse_genomes_project 14 47807265 47807715 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0039077.1 MGP_C57BL6NJ_G0021485.1 mouse_genomes_project 14 24032162 24063596 + MGP_C57BL6NJ_P0039077 Chdh protein_coding protein_coding MGP_C57BL6NJ_T0039078.1 MGP_C57BL6NJ_G0021485.1 mouse_genomes_project 14 24032310 24050333 + Chdh protein_coding processed_transcript MGP_C57BL6NJ_T0039079.1 MGP_C57BL6NJ_G0021485.1 mouse_genomes_project 14 24045772 24061377 + MGP_C57BL6NJ_P0039079 Chdh protein_coding protein_coding MGP_C57BL6NJ_T0040840.1 MGP_C57BL6NJ_G0022079.1 mouse_genomes_project 14 125026901 125028437 + MGP_C57BL6NJ_P0040840 Gm10837 protein_coding protein_coding MGP_C57BL6NJ_T0040101.1 MGP_C57BL6NJ_G0021790.1 mouse_genomes_project 14 52780274 52789503 - MGP_C57BL6NJ_P0040101 Gzmn protein_coding protein_coding MGP_C57BL6NJ_T0039032.1 MGP_C57BL6NJ_G0021466.1 mouse_genomes_project 14 20304230 20304587 + MGP_C57BL6NJ_P0039032 Gm2178 protein_coding protein_coding MGP_C57BL6NJ_T0040491.1 MGP_C57BL6NJ_G0021947.1 mouse_genomes_project 14 68121029 68123537 + Hr protein_coding processed_transcript MGP_C57BL6NJ_T0040492.1 MGP_C57BL6NJ_G0021947.1 mouse_genomes_project 14 68121062 68123483 + Hr protein_coding processed_transcript MGP_C57BL6NJ_T0040493.1 MGP_C57BL6NJ_G0021947.1 mouse_genomes_project 14 68122504 68141120 + MGP_C57BL6NJ_P0040493 Hr protein_coding protein_coding MGP_C57BL6NJ_T0040494.1 MGP_C57BL6NJ_G0021947.1 mouse_genomes_project 14 68122873 68141768 + MGP_C57BL6NJ_P0040494 Hr protein_coding protein_coding MGP_C57BL6NJ_T0040495.1 MGP_C57BL6NJ_G0021947.1 mouse_genomes_project 14 68124717 68141764 + MGP_C57BL6NJ_P0040495 Hr protein_coding protein_coding MGP_C57BL6NJ_T0040754.1 MGP_C57BL6NJ_G0022037.1 mouse_genomes_project 14 104372553 104403009 - MGP_C57BL6NJ_P0040754 Ednrb protein_coding protein_coding MGP_C57BL6NJ_T0040755.1 MGP_C57BL6NJ_G0022037.1 mouse_genomes_project 14 104372554 104402532 - MGP_C57BL6NJ_P0040755 Ednrb protein_coding protein_coding MGP_C57BL6NJ_T0038796.1 MGP_C57BL6NJ_G0021406.1 mouse_genomes_project 14 11289466 11340772 - MGP_C57BL6NJ_P0038796 Ube2e1 protein_coding protein_coding MGP_C57BL6NJ_T0038797.1 MGP_C57BL6NJ_G0021406.1 mouse_genomes_project 14 11291657 11339947 - Ube2e1 protein_coding retained_intron MGP_C57BL6NJ_T0038798.1 MGP_C57BL6NJ_G0021406.1 mouse_genomes_project 14 11291957 11336276 - Ube2e1 protein_coding processed_transcript MGP_C57BL6NJ_T0038799.1 MGP_C57BL6NJ_G0021406.1 mouse_genomes_project 14 11328791 11340010 - Ube2e1 protein_coding retained_intron MGP_C57BL6NJ_T0006876.1 MGP_C57BL6NJ_G0005680.1 mouse_genomes_project 14 58749618 58750512 + Gm26916 lincRNA lincRNA MGP_C57BL6NJ_T0099951.1 MGP_C57BL6NJ_G0037997.1 mouse_genomes_project 14 120686161 120686261 + Gm23302 snRNA snRNA MGP_C57BL6NJ_T0038714.1 MGP_C57BL6NJ_G0021377.1 mouse_genomes_project 14 709574 739817 - MGP_C57BL6NJ_P0038714 Oit1 protein_coding protein_coding MGP_C57BL6NJ_T0099014.1 MGP_C57BL6NJ_G0037078.1 mouse_genomes_project 14 111410922 111411033 + n-R5s50 rRNA rRNA MGP_C57BL6NJ_T0002697.1 MGP_C57BL6NJ_G0002577.1 mouse_genomes_project 14 50607537 50607599 + MGP_C57BL6NJ_P0002697 Traj5 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0001051.1 MGP_C57BL6NJ_G0000960.1 mouse_genomes_project 14 66971474 66976012 - TEC TEC MGP_C57BL6NJ_T0006874.1 MGP_C57BL6NJ_G0005678.1 mouse_genomes_project 14 57511167 57635527 + Gm29266 lincRNA lincRNA MGP_C57BL6NJ_T0040168.1 MGP_C57BL6NJ_G0021818.1 mouse_genomes_project 14 54698822 54797274 - MGP_C57BL6NJ_P0040168 Micu2 protein_coding protein_coding MGP_C57BL6NJ_T0013284.1 MGP_C57BL6NJ_G0011329.1 mouse_genomes_project 14 6471187 6471723 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101205.1 MGP_C57BL6NJ_G0039251.1 mouse_genomes_project 14 3832943 3833075 + Gm25466 snoRNA snoRNA MGP_C57BL6NJ_T0017885.1 MGP_C57BL6NJ_G0015674.1 mouse_genomes_project 14 106187957 106194780 + 4930449E01Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017886.1 MGP_C57BL6NJ_G0015674.1 mouse_genomes_project 14 106190093 106190453 + 4930449E01Rik processed_transcript TEC MGP_C57BL6NJ_T0017887.1 MGP_C57BL6NJ_G0015674.1 mouse_genomes_project 14 106192733 106194787 + 4930449E01Rik processed_transcript lincRNA MGP_C57BL6NJ_T0006869.1 MGP_C57BL6NJ_G0005674.1 mouse_genomes_project 14 52418027 52429270 - Gm26751 lincRNA lincRNA MGP_C57BL6NJ_T0039300.1 MGP_C57BL6NJ_G0021533.1 mouse_genomes_project 14 26942713 26971506 - MGP_C57BL6NJ_P0039300 3425401B19Rik protein_coding protein_coding MGP_C57BL6NJ_T0039793.1 MGP_C57BL6NJ_G0021701.1 mouse_genomes_project 14 48519665 48520702 - MGP_C57BL6NJ_P0039793 protein_coding protein_coding MGP_C57BL6NJ_T0101228.1 MGP_C57BL6NJ_G0039274.1 mouse_genomes_project 14 59692606 59692736 + Gm24625 snoRNA snoRNA MGP_C57BL6NJ_T0101253.1 MGP_C57BL6NJ_G0039299.1 mouse_genomes_project 14 101629138 101629274 + Gm26173 snoRNA snoRNA MGP_C57BL6NJ_T0010227.1 MGP_C57BL6NJ_G0008312.1 mouse_genomes_project 14 112707375 112707464 + Gm22802 miRNA miRNA MGP_C57BL6NJ_T0101255.1 MGP_C57BL6NJ_G0039301.1 mouse_genomes_project 14 105274992 105275109 - Gm25724 snoRNA snoRNA MGP_C57BL6NJ_T0038699.1 MGP_C57BL6NJ_G0021373.1 mouse_genomes_project 14 514725 521734 - MGP_C57BL6NJ_P0038699 Pdhb protein_coding protein_coding MGP_C57BL6NJ_T0101237.1 MGP_C57BL6NJ_G0039283.1 mouse_genomes_project 14 76801148 76801270 + Gm26251 snoRNA snoRNA MGP_C57BL6NJ_T0040123.1 MGP_C57BL6NJ_G0021803.1 mouse_genomes_project 14 53688627 53689045 + MGP_C57BL6NJ_P0040123 protein_coding protein_coding MGP_C57BL6NJ_T0099929.1 MGP_C57BL6NJ_G0037975.1 mouse_genomes_project 14 69784180 69784314 + Gm23735 snRNA snRNA MGP_C57BL6NJ_T0040428.1 MGP_C57BL6NJ_G0021923.1 mouse_genomes_project 14 66984932 66988850 - MGP_C57BL6NJ_P0040428 Gm27179 protein_coding protein_coding MGP_C57BL6NJ_T0017867.1 MGP_C57BL6NJ_G0015666.1 mouse_genomes_project 14 64873203 64884238 - 1700120O09Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0039887.1 MGP_C57BL6NJ_G0021725.1 mouse_genomes_project 14 51154387 51215140 - MGP_C57BL6NJ_P0039887 Slc7a8 protein_coding protein_coding MGP_C57BL6NJ_T0013343.1 MGP_C57BL6NJ_G0011388.1 mouse_genomes_project 14 72570797 72584562 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039475.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42329697 42567135 + MGP_C57BL6NJ_P0039475 Samd4 protein_coding protein_coding MGP_C57BL6NJ_T0039476.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42329808 42569814 + MGP_C57BL6NJ_P0039476 Samd4 protein_coding protein_coding MGP_C57BL6NJ_T0039477.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42330349 42333424 + Samd4 protein_coding processed_transcript MGP_C57BL6NJ_T0039478.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42332952 42569808 + MGP_C57BL6NJ_P0039478 Samd4 protein_coding protein_coding MGP_C57BL6NJ_T0039479.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42462705 42464703 + Samd4 protein_coding processed_transcript MGP_C57BL6NJ_T0039480.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42462712 42565619 + MGP_C57BL6NJ_P0039480 Samd4 protein_coding protein_coding MGP_C57BL6NJ_T0039481.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42477729 42569821 + MGP_C57BL6NJ_P0039481 Samd4 protein_coding protein_coding MGP_C57BL6NJ_T0039482.1 MGP_C57BL6NJ_G0021602.1 mouse_genomes_project 14 42549953 42551920 + Samd4 protein_coding processed_transcript MGP_C57BL6NJ_T0002721.1 MGP_C57BL6NJ_G0002599.1 mouse_genomes_project 14 50576262 50576325 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0038734.1 MGP_C57BL6NJ_G0021383.1 mouse_genomes_project 14 4930339 4937128 - MGP_C57BL6NJ_P0038734 Fezf2 protein_coding protein_coding MGP_C57BL6NJ_T0039471.1 MGP_C57BL6NJ_G0021601.1 mouse_genomes_project 14 42270425 42295907 + MGP_C57BL6NJ_P0039471 Cgrrf1 protein_coding protein_coding MGP_C57BL6NJ_T0039472.1 MGP_C57BL6NJ_G0021601.1 mouse_genomes_project 14 42270510 42278704 + Cgrrf1 protein_coding retained_intron MGP_C57BL6NJ_T0039473.1 MGP_C57BL6NJ_G0021601.1 mouse_genomes_project 14 42270520 42288315 + Cgrrf1 protein_coding retained_intron MGP_C57BL6NJ_T0039474.1 MGP_C57BL6NJ_G0021601.1 mouse_genomes_project 14 42270535 42289785 + Cgrrf1 protein_coding retained_intron MGP_C57BL6NJ_T0039595.1 MGP_C57BL6NJ_G0021637.1 mouse_genomes_project 14 46178475 46179411 + MGP_C57BL6NJ_P0039595 Olfr738 protein_coding protein_coding MGP_C57BL6NJ_T0003712.1 MGP_C57BL6NJ_G0003360.1 mouse_genomes_project 14 53453268 53458392 + 2410022M11Rik antisense antisense MGP_C57BL6NJ_T0040829.1 MGP_C57BL6NJ_G0022072.1 mouse_genomes_project 14 124426796 124439659 - MGP_C57BL6NJ_P0040829 Gpr183 protein_coding protein_coding MGP_C57BL6NJ_T0003706.1 MGP_C57BL6NJ_G0003356.1 mouse_genomes_project 14 51542919 51561959 + Gm20687 antisense antisense MGP_C57BL6NJ_T0002793.1 MGP_C57BL6NJ_G0002661.1 mouse_genomes_project 14 50102709 50102973 + MGP_C57BL6NJ_P0002793 Trav13-4-dv7 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039691.1 MGP_C57BL6NJ_G0021684.1 mouse_genomes_project 14 47953143 47958592 + MGP_C57BL6NJ_P0039691 Tppp2 protein_coding protein_coding MGP_C57BL6NJ_T0039692.1 MGP_C57BL6NJ_G0021684.1 mouse_genomes_project 14 47956665 47958592 + MGP_C57BL6NJ_P0039692 Tppp2 protein_coding protein_coding MGP_C57BL6NJ_T0099342.1 MGP_C57BL6NJ_G0037402.1 mouse_genomes_project 14 42417494 42426608 + sense_intronic sense_intronic MGP_C57BL6NJ_T0002783.1 MGP_C57BL6NJ_G0002653.1 mouse_genomes_project 14 49935733 49936227 + MGP_C57BL6NJ_P0002783 Trav12-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002661.1 MGP_C57BL6NJ_G0002541.1 mouse_genomes_project 14 50566710 50566773 + MGP_C57BL6NJ_P0002661 Traj45 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039615.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46688434 46713648 - MGP_C57BL6NJ_P0039615 Osgep protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039616.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46698304 46713707 - MGP_C57BL6NJ_P0039616 Osgep protein_coding protein_coding MGP_C57BL6NJ_T0039617.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46703828 46713644 - MGP_C57BL6NJ_P0039617 Osgep protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039618.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46703832 46713686 - MGP_C57BL6NJ_P0039618 Osgep protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039619.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46703832 46713502 - MGP_C57BL6NJ_P0039619 Osgep protein_coding protein_coding MGP_C57BL6NJ_T0039620.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46703934 46705521 - Osgep protein_coding retained_intron MGP_C57BL6NJ_T0039621.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46704840 46713440 - MGP_C57BL6NJ_P0039621 Osgep protein_coding protein_coding MGP_C57BL6NJ_T0039622.1 MGP_C57BL6NJ_G0021655.1 mouse_genomes_project 14 46705240 46713657 - Osgep protein_coding retained_intron MGP_C57BL6NJ_T0003676.1 MGP_C57BL6NJ_G0003331.1 mouse_genomes_project 14 15064820 15069615 + Gm15935 antisense antisense MGP_C57BL6NJ_T0003677.1 MGP_C57BL6NJ_G0003331.1 mouse_genomes_project 14 15064842 15069910 + Gm15935 antisense antisense MGP_C57BL6NJ_T0003678.1 MGP_C57BL6NJ_G0003331.1 mouse_genomes_project 14 15064866 15069361 + Gm15935 antisense antisense MGP_C57BL6NJ_T0040429.1 MGP_C57BL6NJ_G0021924.1 mouse_genomes_project 14 67031703 67065600 + MGP_C57BL6NJ_P0040429 Gm21685 protein_coding protein_coding MGP_C57BL6NJ_T0040430.1 MGP_C57BL6NJ_G0021924.1 mouse_genomes_project 14 67031719 67047077 + Gm21685 protein_coding retained_intron MGP_C57BL6NJ_T0040431.1 MGP_C57BL6NJ_G0021924.1 mouse_genomes_project 14 67031727 67047078 + MGP_C57BL6NJ_P0040431 Gm21685 protein_coding protein_coding MGP_C57BL6NJ_T0040432.1 MGP_C57BL6NJ_G0021924.1 mouse_genomes_project 14 67031745 67044309 + Gm21685 protein_coding processed_transcript MGP_C57BL6NJ_T0040434.1 MGP_C57BL6NJ_G0021924.1 mouse_genomes_project 14 67060888 67064546 + Gm21685 protein_coding retained_intron MGP_C57BL6NJ_T0039606.1 MGP_C57BL6NJ_G0021647.1 mouse_genomes_project 14 46461646 46462673 + MGP_C57BL6NJ_P0039606 Olfr748 protein_coding protein_coding MGP_C57BL6NJ_T0040828.1 MGP_C57BL6NJ_G0022071.1 mouse_genomes_project 14 124383564 124387892 - MGP_C57BL6NJ_P0040828 Gpr18 protein_coding protein_coding MGP_C57BL6NJ_T0040734.1 MGP_C57BL6NJ_G0022032.1 mouse_genomes_project 14 103572247 103584893 + MGP_C57BL6NJ_P0040734 Cln5 protein_coding protein_coding MGP_C57BL6NJ_T0038747.1 MGP_C57BL6NJ_G0021389.1 mouse_genomes_project 14 6717681 6816736 + MGP_C57BL6NJ_P0038747 Atxn7 protein_coding protein_coding MGP_C57BL6NJ_T0039642.1 MGP_C57BL6NJ_G0021661.1 mouse_genomes_project 14 46848895 46852306 - MGP_C57BL6NJ_P0039642 Rnase9 protein_coding protein_coding MGP_C57BL6NJ_T0002765.1 MGP_C57BL6NJ_G0002638.1 mouse_genomes_project 14 49497263 49497879 + MGP_C57BL6NJ_P0002765 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002767.1 MGP_C57BL6NJ_G0002640.1 mouse_genomes_project 14 49673111 49674770 + MGP_C57BL6NJ_P0002767 Trav6d-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002769.1 MGP_C57BL6NJ_G0002640.1 mouse_genomes_project 14 49674465 49674770 + MGP_C57BL6NJ_P0002769 Trav6d-3 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0038884.1 MGP_C57BL6NJ_G0021436.1 mouse_genomes_project 14 14332917 14747406 + MGP_C57BL6NJ_P0038884 Adk protein_coding protein_coding MGP_C57BL6NJ_T0038885.1 MGP_C57BL6NJ_G0021436.1 mouse_genomes_project 14 14357844 14747411 + MGP_C57BL6NJ_P0038885 Adk protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039930.1 MGP_C57BL6NJ_G0021740.1 mouse_genomes_project 14 51549312 51581885 - MGP_C57BL6NJ_P0039930 Zfhx2 protein_coding protein_coding MGP_C57BL6NJ_T0039931.1 MGP_C57BL6NJ_G0021740.1 mouse_genomes_project 14 51555257 51561796 - Zfhx2 protein_coding retained_intron MGP_C57BL6NJ_T0039932.1 MGP_C57BL6NJ_G0021740.1 mouse_genomes_project 14 51564130 51570014 - Zfhx2 protein_coding retained_intron MGP_C57BL6NJ_T0039933.1 MGP_C57BL6NJ_G0021740.1 mouse_genomes_project 14 51579132 51581603 - Zfhx2 protein_coding retained_intron MGP_C57BL6NJ_T0040068.1 MGP_C57BL6NJ_G0021767.1 mouse_genomes_project 14 52275017 52275658 - Dhrs1 protein_coding retained_intron MGP_C57BL6NJ_T0040069.1 MGP_C57BL6NJ_G0021767.1 mouse_genomes_project 14 52275017 52281603 - Dhrs1 protein_coding retained_intron MGP_C57BL6NJ_T0040070.1 MGP_C57BL6NJ_G0021767.1 mouse_genomes_project 14 52275019 52281694 - MGP_C57BL6NJ_P0040070 Dhrs1 protein_coding protein_coding MGP_C57BL6NJ_T0040071.1 MGP_C57BL6NJ_G0021767.1 mouse_genomes_project 14 52275231 52276142 - Dhrs1 protein_coding retained_intron MGP_C57BL6NJ_T0040770.1 MGP_C57BL6NJ_G0022043.1 mouse_genomes_project 14 106817111 106817516 - MGP_C57BL6NJ_P0040770 Gm4775 protein_coding protein_coding MGP_C57BL6NJ_T0039584.1 MGP_C57BL6NJ_G0021629.1 mouse_genomes_project 14 45915400 45916357 - MGP_C57BL6NJ_P0039584 protein_coding protein_coding MGP_C57BL6NJ_T0099914.1 MGP_C57BL6NJ_G0037960.1 mouse_genomes_project 14 44654724 44654844 - Gm23470 snRNA snRNA MGP_C57BL6NJ_T0006844.1 MGP_C57BL6NJ_G0005655.1 mouse_genomes_project 14 26735316 26753815 + Gm2990 lincRNA lincRNA MGP_C57BL6NJ_T0003734.1 MGP_C57BL6NJ_G0003376.1 mouse_genomes_project 14 73810692 73812278 - Gm4285 antisense antisense MGP_C57BL6NJ_T0039956.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52030323 52037310 + MGP_C57BL6NJ_P0039956 Cpne6 protein_coding protein_coding MGP_C57BL6NJ_T0039957.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52030326 52037310 + MGP_C57BL6NJ_P0039957 Cpne6 protein_coding protein_coding MGP_C57BL6NJ_T0039958.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52030353 52037309 + Cpne6 protein_coding retained_intron MGP_C57BL6NJ_T0039959.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52030475 52033571 + MGP_C57BL6NJ_P0039959 Cpne6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039960.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52031189 52037310 + Cpne6 protein_coding retained_intron MGP_C57BL6NJ_T0039961.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52031238 52037310 + MGP_C57BL6NJ_P0039961 Cpne6 protein_coding protein_coding MGP_C57BL6NJ_T0039962.1 MGP_C57BL6NJ_G0021746.1 mouse_genomes_project 14 52031863 52037308 + MGP_C57BL6NJ_P0039962 Cpne6 protein_coding protein_coding MGP_C57BL6NJ_T0013325.1 MGP_C57BL6NJ_G0011370.1 mouse_genomes_project 14 49435206 49435574 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039051.1 MGP_C57BL6NJ_G0021472.1 mouse_genomes_project 14 20728400 20795248 - MGP_C57BL6NJ_P0039051 Appl1 protein_coding protein_coding MGP_C57BL6NJ_T0039052.1 MGP_C57BL6NJ_G0021472.1 mouse_genomes_project 14 20768171 20782527 - Appl1 protein_coding retained_intron MGP_C57BL6NJ_T0039053.1 MGP_C57BL6NJ_G0021472.1 mouse_genomes_project 14 20769464 20794516 - Appl1 protein_coding retained_intron MGP_C57BL6NJ_T0039054.1 MGP_C57BL6NJ_G0021472.1 mouse_genomes_project 14 20786612 20794479 - Appl1 protein_coding retained_intron MGP_C57BL6NJ_T0040822.1 MGP_C57BL6NJ_G0022067.1 mouse_genomes_project 14 123671074 123770881 - MGP_C57BL6NJ_P0040822 Stk24 protein_coding protein_coding MGP_C57BL6NJ_T0099013.1 MGP_C57BL6NJ_G0037077.1 mouse_genomes_project 14 103298954 103299002 + Gm23764 rRNA rRNA MGP_C57BL6NJ_T0102852.1 MGP_C57BL6NJ_G0040646.1 mouse_genomes_project 14 46174914 46175197 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013364.1 MGP_C57BL6NJ_G0011409.1 mouse_genomes_project 14 125030963 125031602 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038928.1 MGP_C57BL6NJ_G0021443.1 mouse_genomes_project 14 15316431 15322035 - MGP_C57BL6NJ_P0038928 Zfp503 protein_coding protein_coding MGP_C57BL6NJ_T0038834.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13644562 13704925 - MGP_C57BL6NJ_P0038834 Cfap70 protein_coding protein_coding MGP_C57BL6NJ_T0038835.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13644562 13704925 - MGP_C57BL6NJ_P0038835 Cfap70 protein_coding protein_coding MGP_C57BL6NJ_T0038836.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13644562 13704925 - MGP_C57BL6NJ_P0038836 Cfap70 protein_coding protein_coding MGP_C57BL6NJ_T0038837.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13644565 13704922 - MGP_C57BL6NJ_P0038837 Cfap70 protein_coding protein_coding MGP_C57BL6NJ_T0038838.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13676172 13704926 - Cfap70 protein_coding retained_intron MGP_C57BL6NJ_T0038839.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13676673 13681233 - Cfap70 protein_coding processed_transcript MGP_C57BL6NJ_T0038840.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13690909 13704923 - MGP_C57BL6NJ_P0038840 Cfap70 protein_coding protein_coding MGP_C57BL6NJ_T0038841.1 MGP_C57BL6NJ_G0021420.1 mouse_genomes_project 14 13698604 13701407 - Cfap70 protein_coding retained_intron MGP_C57BL6NJ_T0040441.1 MGP_C57BL6NJ_G0021927.1 mouse_genomes_project 14 67185446 67195616 - MGP_C57BL6NJ_P0040441 R3hcc1 protein_coding protein_coding MGP_C57BL6NJ_T0040442.1 MGP_C57BL6NJ_G0021927.1 mouse_genomes_project 14 67185447 67195525 - MGP_C57BL6NJ_P0040442 R3hcc1 protein_coding protein_coding MGP_C57BL6NJ_T0040443.1 MGP_C57BL6NJ_G0021927.1 mouse_genomes_project 14 67186471 67188161 - R3hcc1 protein_coding retained_intron MGP_C57BL6NJ_T0040444.1 MGP_C57BL6NJ_G0021927.1 mouse_genomes_project 14 67191617 67193345 - R3hcc1 protein_coding retained_intron MGP_C57BL6NJ_T0040445.1 MGP_C57BL6NJ_G0021927.1 mouse_genomes_project 14 67193656 67195585 - R3hcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0039886.1 MGP_C57BL6NJ_G0021724.1 mouse_genomes_project 14 51142503 51144315 - MGP_C57BL6NJ_P0039886 Cebpe protein_coding protein_coding MGP_C57BL6NJ_T0017863.1 MGP_C57BL6NJ_G0015664.1 mouse_genomes_project 14 63778559 63780353 - 1700001G11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017864.1 MGP_C57BL6NJ_G0015664.1 mouse_genomes_project 14 63778560 63780164 - 1700001G11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017865.1 MGP_C57BL6NJ_G0015664.1 mouse_genomes_project 14 63778720 63780107 - 1700001G11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0038826.1 MGP_C57BL6NJ_G0021415.1 mouse_genomes_project 14 13546407 13565911 + MGP_C57BL6NJ_P0038826 Nudt13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039592.1 MGP_C57BL6NJ_G0021635.1 mouse_genomes_project 14 46118572 46124322 + MGP_C57BL6NJ_P0039592 Tlr11 protein_coding protein_coding MGP_C57BL6NJ_T0039593.1 MGP_C57BL6NJ_G0021635.1 mouse_genomes_project 14 46121160 46124153 + MGP_C57BL6NJ_P0039593 Tlr11 protein_coding protein_coding MGP_C57BL6NJ_T0013326.1 MGP_C57BL6NJ_G0011371.1 mouse_genomes_project 14 49714631 49715381 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040173.1 MGP_C57BL6NJ_G0021820.1 mouse_genomes_project 14 55990316 56000424 - MGP_C57BL6NJ_P0040173 1700129C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0040174.1 MGP_C57BL6NJ_G0021820.1 mouse_genomes_project 14 55990515 56000424 - MGP_C57BL6NJ_P0040174 1700129C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0040175.1 MGP_C57BL6NJ_G0021820.1 mouse_genomes_project 14 55990518 56000424 - MGP_C57BL6NJ_P0040175 1700129C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0040176.1 MGP_C57BL6NJ_G0021820.1 mouse_genomes_project 14 55998856 56000424 - MGP_C57BL6NJ_P0040176 1700129C05Rik protein_coding protein_coding MGP_C57BL6NJ_T0006827.1 MGP_C57BL6NJ_G0005645.1 mouse_genomes_project 14 18125487 18136115 - lincRNA lincRNA MGP_C57BL6NJ_T0006828.1 MGP_C57BL6NJ_G0005645.1 mouse_genomes_project 14 18133921 18136108 - lincRNA lincRNA MGP_C57BL6NJ_T0102845.1 MGP_C57BL6NJ_G0040639.1 mouse_genomes_project 14 38948478 38948913 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013322.1 MGP_C57BL6NJ_G0011367.1 mouse_genomes_project 14 48630956 48631524 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038854.1 MGP_C57BL6NJ_G0021424.1 mouse_genomes_project 14 13811093 13870956 - MGP_C57BL6NJ_P0038854 Usp54 protein_coding protein_coding MGP_C57BL6NJ_T0038855.1 MGP_C57BL6NJ_G0021424.1 mouse_genomes_project 14 13811093 13882073 - MGP_C57BL6NJ_P0038855 Usp54 protein_coding protein_coding MGP_C57BL6NJ_T0038856.1 MGP_C57BL6NJ_G0021424.1 mouse_genomes_project 14 13840211 13849092 - MGP_C57BL6NJ_P0038856 Usp54 protein_coding protein_coding MGP_C57BL6NJ_T0038857.1 MGP_C57BL6NJ_G0021424.1 mouse_genomes_project 14 13844200 13869058 - Usp54 protein_coding retained_intron MGP_C57BL6NJ_T0038858.1 MGP_C57BL6NJ_G0021424.1 mouse_genomes_project 14 13846256 13882073 - Usp54 protein_coding retained_intron MGP_C57BL6NJ_T0099906.1 MGP_C57BL6NJ_G0037952.1 mouse_genomes_project 14 28015007 28015114 + Gm26228 snRNA snRNA MGP_C57BL6NJ_T0006901.1 MGP_C57BL6NJ_G0005698.1 mouse_genomes_project 14 120174817 120185671 + Gm26773 lincRNA lincRNA MGP_C57BL6NJ_T0010230.1 MGP_C57BL6NJ_G0008315.1 mouse_genomes_project 14 116827786 116827868 + Mir19a miRNA miRNA MGP_C57BL6NJ_T0040673.1 MGP_C57BL6NJ_G0022012.1 mouse_genomes_project 14 86410685 86520106 + MGP_C57BL6NJ_P0040673 Tdrd3 protein_coding protein_coding MGP_C57BL6NJ_T0040674.1 MGP_C57BL6NJ_G0022012.1 mouse_genomes_project 14 86410685 86555060 + MGP_C57BL6NJ_P0040674 Tdrd3 protein_coding protein_coding MGP_C57BL6NJ_T0040675.1 MGP_C57BL6NJ_G0022012.1 mouse_genomes_project 14 86410712 86555073 + MGP_C57BL6NJ_P0040675 Tdrd3 protein_coding protein_coding MGP_C57BL6NJ_T0040676.1 MGP_C57BL6NJ_G0022012.1 mouse_genomes_project 14 86455932 86480464 + MGP_C57BL6NJ_P0040676 Tdrd3 protein_coding protein_coding MGP_C57BL6NJ_T0040677.1 MGP_C57BL6NJ_G0022012.1 mouse_genomes_project 14 86470450 86487144 + MGP_C57BL6NJ_P0040677 Tdrd3 protein_coding protein_coding MGP_C57BL6NJ_T0039792.1 MGP_C57BL6NJ_G0021700.1 mouse_genomes_project 14 48519604 48520703 - MGP_C57BL6NJ_P0039792 protein_coding protein_coding MGP_C57BL6NJ_T0039794.1 MGP_C57BL6NJ_G0021700.1 mouse_genomes_project 14 48519940 48524147 - MGP_C57BL6NJ_P0039794 protein_coding protein_coding MGP_C57BL6NJ_T0002698.1 MGP_C57BL6NJ_G0002578.1 mouse_genomes_project 14 50612571 50612634 + MGP_C57BL6NJ_P0002698 Traj4 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039511.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43178580 43273493 + MGP_C57BL6NJ_P0039511 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039512.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43179433 43273493 + MGP_C57BL6NJ_P0039512 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039513.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43179438 43194456 + MGP_C57BL6NJ_P0039513 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039514.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43179516 43273500 + MGP_C57BL6NJ_P0039514 Ktn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039515.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193896 43273499 + MGP_C57BL6NJ_P0039515 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039516.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273220 + MGP_C57BL6NJ_P0039516 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039517.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039517 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039518.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273229 + MGP_C57BL6NJ_P0039518 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039519.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273215 + MGP_C57BL6NJ_P0039519 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039520.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039520 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039521.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039521 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039522.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273225 + MGP_C57BL6NJ_P0039522 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039523.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039523 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039524.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039524 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039525.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039525 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039526.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039526 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039527.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273229 + MGP_C57BL6NJ_P0039527 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039528.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273223 + MGP_C57BL6NJ_P0039528 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039529.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273224 + MGP_C57BL6NJ_P0039529 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039530.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039530 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039531.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43193927 43273227 + MGP_C57BL6NJ_P0039531 Ktn1 protein_coding protein_coding MGP_C57BL6NJ_T0039532.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43235808 43239593 + Ktn1 protein_coding retained_intron MGP_C57BL6NJ_T0039533.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43240810 43250630 + Ktn1 protein_coding retained_intron MGP_C57BL6NJ_T0039534.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43249830 43261820 + Ktn1 protein_coding retained_intron MGP_C57BL6NJ_T0039535.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43261703 43263179 + Ktn1 protein_coding retained_intron MGP_C57BL6NJ_T0039536.1 MGP_C57BL6NJ_G0021611.1 mouse_genomes_project 14 43266594 43273497 + Ktn1 protein_coding retained_intron MGP_C57BL6NJ_T0039466.1 MGP_C57BL6NJ_G0021599.1 mouse_genomes_project 14 42216224 42229035 - MGP_C57BL6NJ_P0039466 Cnih1 protein_coding protein_coding MGP_C57BL6NJ_T0039467.1 MGP_C57BL6NJ_G0021599.1 mouse_genomes_project 14 42216224 42229035 - MGP_C57BL6NJ_P0039467 Cnih1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102843.1 MGP_C57BL6NJ_G0040637.1 mouse_genomes_project 14 38882038 38882392 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0039723.1 MGP_C57BL6NJ_G0021689.1 mouse_genomes_project 14 48082240 48084156 - MGP_C57BL6NJ_P0039723 Olfr221 protein_coding protein_coding MGP_C57BL6NJ_T0038716.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1973391 2905296 - MGP_C57BL6NJ_P0038716 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038717.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1973399 3650539 - MGP_C57BL6NJ_P0038717 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038718.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1973399 3650536 - MGP_C57BL6NJ_P0038718 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038719.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1973692 2296482 - MGP_C57BL6NJ_P0038719 Fhit protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038720.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1973692 2872816 - MGP_C57BL6NJ_P0038720 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038721.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 1998159 3609675 - MGP_C57BL6NJ_P0038721 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038722.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 2188430 3609263 - Fhit protein_coding retained_intron MGP_C57BL6NJ_T0038723.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 2188537 3609646 - MGP_C57BL6NJ_P0038723 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038724.1 MGP_C57BL6NJ_G0021379.1 mouse_genomes_project 14 2294226 3650539 - MGP_C57BL6NJ_P0038724 Fhit protein_coding protein_coding MGP_C57BL6NJ_T0038925.1 MGP_C57BL6NJ_G0021442.1 mouse_genomes_project 14 15175098 15176798 - MGP_C57BL6NJ_P0038925 Comtd1 protein_coding protein_coding MGP_C57BL6NJ_T0038926.1 MGP_C57BL6NJ_G0021442.1 mouse_genomes_project 14 15175104 15176820 - Comtd1 protein_coding retained_intron MGP_C57BL6NJ_T0038927.1 MGP_C57BL6NJ_G0021442.1 mouse_genomes_project 14 15175110 15175736 - Comtd1 protein_coding retained_intron MGP_C57BL6NJ_T0040240.1 MGP_C57BL6NJ_G0021843.1 mouse_genomes_project 14 58434083 58455821 - MGP_C57BL6NJ_P0040240 Ebpl protein_coding protein_coding MGP_C57BL6NJ_T0039215.1 MGP_C57BL6NJ_G0021510.1 mouse_genomes_project 14 25404173 25467219 - MGP_C57BL6NJ_P0039215 Dnah1 protein_coding protein_coding MGP_C57BL6NJ_T0010236.1 MGP_C57BL6NJ_G0008321.1 mouse_genomes_project 14 120693475 120693579 - Mir6391 miRNA miRNA MGP_C57BL6NJ_T0038967.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 18958773 19041211 + Zmiz1 protein_coding retained_intron MGP_C57BL6NJ_T0038968.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 18958812 19171810 + MGP_C57BL6NJ_P0038968 Zmiz1 protein_coding protein_coding MGP_C57BL6NJ_T0038969.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 18958855 19169786 + MGP_C57BL6NJ_P0038969 Zmiz1 protein_coding protein_coding MGP_C57BL6NJ_T0038970.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 18958880 19154703 + Zmiz1 protein_coding retained_intron MGP_C57BL6NJ_T0038971.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 18959143 19076034 + Zmiz1 protein_coding processed_transcript MGP_C57BL6NJ_T0038972.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 19112543 19148788 + Zmiz1 protein_coding processed_transcript MGP_C57BL6NJ_T0038973.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 19113024 19150864 + MGP_C57BL6NJ_P0038973 Zmiz1 protein_coding protein_coding MGP_C57BL6NJ_T0038974.1 MGP_C57BL6NJ_G0021450.1 mouse_genomes_project 14 19161896 19163472 + Zmiz1 protein_coding retained_intron MGP_C57BL6NJ_T0002680.1 MGP_C57BL6NJ_G0002560.1 mouse_genomes_project 14 50588606 50588663 + MGP_C57BL6NJ_P0002680 Traj25 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0039892.1 MGP_C57BL6NJ_G0021727.1 mouse_genomes_project 14 51316262 51316906 - Ppp1r3e protein_coding processed_transcript MGP_C57BL6NJ_T0039893.1 MGP_C57BL6NJ_G0021727.1 mouse_genomes_project 14 51316274 51321154 - MGP_C57BL6NJ_P0039893 Ppp1r3e protein_coding protein_coding MGP_C57BL6NJ_T0039894.1 MGP_C57BL6NJ_G0021727.1 mouse_genomes_project 14 51319200 51320225 - Ppp1r3e protein_coding TEC MGP_C57BL6NJ_T0039895.1 MGP_C57BL6NJ_G0021727.1 mouse_genomes_project 14 51319200 51321142 - MGP_C57BL6NJ_P0039895 Ppp1r3e protein_coding protein_coding MGP_C57BL6NJ_T0101217.1 MGP_C57BL6NJ_G0039263.1 mouse_genomes_project 14 31188418 31188541 + Gm24394 snoRNA snoRNA MGP_C57BL6NJ_T0013292.1 MGP_C57BL6NJ_G0011337.1 mouse_genomes_project 14 12224682 12225165 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040189.1 MGP_C57BL6NJ_G0021823.1 mouse_genomes_project 14 56105674 56330156 - Phf11d protein_coding retained_intron MGP_C57BL6NJ_T0040190.1 MGP_C57BL6NJ_G0021823.1 mouse_genomes_project 14 56105674 56330160 - MGP_C57BL6NJ_P0040190 Phf11d protein_coding protein_coding MGP_C57BL6NJ_T0040194.1 MGP_C57BL6NJ_G0021823.1 mouse_genomes_project 14 56296763 56330126 - MGP_C57BL6NJ_P0040194 Phf11d protein_coding protein_coding MGP_C57BL6NJ_T0006872.1 MGP_C57BL6NJ_G0005676.1 mouse_genomes_project 14 54323695 54324440 + 1700039M10Rik lincRNA lincRNA MGP_C57BL6NJ_T0040387.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64506196 64535605 - MGP_C57BL6NJ_P0040387 Bnip3l protein_coding protein_coding MGP_C57BL6NJ_T0040388.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64506196 64535584 - MGP_C57BL6NJ_P0040388 Bnip3l protein_coding protein_coding MGP_C57BL6NJ_T0040389.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64513708 64524411 - Bnip3l protein_coding processed_transcript MGP_C57BL6NJ_T0040390.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64513887 64525014 - Bnip3l protein_coding processed_transcript MGP_C57BL6NJ_T0040391.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64513896 64524231 - Bnip3l protein_coding processed_transcript MGP_C57BL6NJ_T0040392.1 MGP_C57BL6NJ_G0021905.1 mouse_genomes_project 14 64518009 64524163 - Bnip3l protein_coding retained_intron MGP_C57BL6NJ_T0038873.1 MGP_C57BL6NJ_G0021433.1 mouse_genomes_project 14 14111784 14118508 + MGP_C57BL6NJ_P0038873 Plau protein_coding protein_coding MGP_C57BL6NJ_T0040483.1 MGP_C57BL6NJ_G0021941.1 mouse_genomes_project 14 68001214 68005937 - MGP_C57BL6NJ_P0040483 Polr3d protein_coding protein_coding MGP_C57BL6NJ_T0040484.1 MGP_C57BL6NJ_G0021941.1 mouse_genomes_project 14 68001214 68005693 - MGP_C57BL6NJ_P0040484 Polr3d protein_coding protein_coding MGP_C57BL6NJ_T0040146.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54397079 54511720 - MGP_C57BL6NJ_P0040146 Lats2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040149.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54445950 54511740 - MGP_C57BL6NJ_P0040149 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040150.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54447386 54511738 - MGP_C57BL6NJ_P0040150 Lats2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040151.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54450536 54511722 - MGP_C57BL6NJ_P0040151 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040152.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54456539 54459068 - MGP_C57BL6NJ_P0040152 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040153.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54463168 54526098 - MGP_C57BL6NJ_P0040153 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040154.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54486624 54499953 - MGP_C57BL6NJ_P0040154 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040155.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54486624 54499953 - MGP_C57BL6NJ_P0040155 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040156.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54499832 54510271 - MGP_C57BL6NJ_P0040156 Lats2 protein_coding protein_coding MGP_C57BL6NJ_T0040157.1 MGP_C57BL6NJ_G0021813.1 mouse_genomes_project 14 54499905 54512195 - Lats2 protein_coding processed_transcript MGP_C57BL6NJ_T0039835.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50836332 50846840 + MGP_C57BL6NJ_P0039835 Mmp14 protein_coding protein_coding MGP_C57BL6NJ_T0039836.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50836343 50841921 + MGP_C57BL6NJ_P0039836 Mmp14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039837.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50836384 50841893 + Mmp14 protein_coding retained_intron MGP_C57BL6NJ_T0039838.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50836438 50837986 + Mmp14 protein_coding retained_intron MGP_C57BL6NJ_T0039839.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50836586 50846275 + MGP_C57BL6NJ_P0039839 Mmp14 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039840.1 MGP_C57BL6NJ_G0021711.1 mouse_genomes_project 14 50837156 50841605 + MGP_C57BL6NJ_P0039840 Mmp14 protein_coding protein_coding MGP_C57BL6NJ_T0002631.1 MGP_C57BL6NJ_G0002518.1 mouse_genomes_project 14 50616801 50620988 + MGP_C57BL6NJ_P0002631 Trac TR_C_gene TR_C_gene MGP_C57BL6NJ_T0002632.1 MGP_C57BL6NJ_G0002518.1 mouse_genomes_project 14 50616801 50622093 + MGP_C57BL6NJ_P0002632 Trac TR_C_gene TR_C_gene MGP_C57BL6NJ_T0038759.1 MGP_C57BL6NJ_G0021395.1 mouse_genomes_project 14 7448531 7557122 + MGP_C57BL6NJ_P0038759 Slc4a7 protein_coding protein_coding MGP_C57BL6NJ_T0039570.1 MGP_C57BL6NJ_G0021620.1 mouse_genomes_project 14 45372996 45481699 - MGP_C57BL6NJ_P0039570 3632451O06Rik protein_coding protein_coding MGP_C57BL6NJ_T0039571.1 MGP_C57BL6NJ_G0021620.1 mouse_genomes_project 14 45373104 45481687 - MGP_C57BL6NJ_P0039571 3632451O06Rik protein_coding protein_coding MGP_C57BL6NJ_T0039572.1 MGP_C57BL6NJ_G0021620.1 mouse_genomes_project 14 45424143 45446773 - 3632451O06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0002659.1 MGP_C57BL6NJ_G0002539.1 mouse_genomes_project 14 50565691 50565748 + MGP_C57BL6NJ_P0002659 Traj47 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0013338.1 MGP_C57BL6NJ_G0011383.1 mouse_genomes_project 14 57165323 57165671 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039819.1 MGP_C57BL6NJ_G0021708.1 mouse_genomes_project 14 50761424 50765079 + Oxa1l protein_coding retained_intron MGP_C57BL6NJ_T0039820.1 MGP_C57BL6NJ_G0021708.1 mouse_genomes_project 14 50761424 50770257 + MGP_C57BL6NJ_P0039820 Oxa1l protein_coding protein_coding MGP_C57BL6NJ_T0039821.1 MGP_C57BL6NJ_G0021708.1 mouse_genomes_project 14 50761628 50767627 + Oxa1l protein_coding retained_intron MGP_C57BL6NJ_T0040338.1 MGP_C57BL6NJ_G0021889.1 mouse_genomes_project 14 63239427 63256488 - MGP_C57BL6NJ_P0040338 Esco2 protein_coding protein_coding MGP_C57BL6NJ_T0040339.1 MGP_C57BL6NJ_G0021889.1 mouse_genomes_project 14 63246401 63247597 - Esco2 protein_coding processed_transcript MGP_C57BL6NJ_T0040340.1 MGP_C57BL6NJ_G0021889.1 mouse_genomes_project 14 63247350 63249330 - Esco2 protein_coding processed_transcript MGP_C57BL6NJ_T0001037.1 MGP_C57BL6NJ_G0000946.1 mouse_genomes_project 14 41437895 41457443 - TEC TEC MGP_C57BL6NJ_T0013316.1 MGP_C57BL6NJ_G0011361.1 mouse_genomes_project 14 46400064 46400347 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099953.1 MGP_C57BL6NJ_G0037999.1 mouse_genomes_project 14 124915849 124915956 - Gm25464 snRNA snRNA MGP_C57BL6NJ_T0039341.1 MGP_C57BL6NJ_G0021550.1 mouse_genomes_project 14 28480237 28494816 + MGP_C57BL6NJ_P0039341 Anxa8 protein_coding protein_coding MGP_C57BL6NJ_T0039342.1 MGP_C57BL6NJ_G0021550.1 mouse_genomes_project 14 28480281 28494266 + MGP_C57BL6NJ_P0039342 Anxa8 protein_coding protein_coding MGP_C57BL6NJ_T0039772.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389681 48400142 - MGP_C57BL6NJ_P0039772 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039773.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389854 48400187 - MGP_C57BL6NJ_P0039773 Mettl3 protein_coding protein_coding MGP_C57BL6NJ_T0039774.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389862 48395362 - MGP_C57BL6NJ_P0039774 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039775.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389870 48391683 - Mettl3 protein_coding retained_intron MGP_C57BL6NJ_T0039776.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389870 48391766 - MGP_C57BL6NJ_P0039776 Mettl3 protein_coding protein_coding MGP_C57BL6NJ_T0039777.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48389870 48391765 - MGP_C57BL6NJ_P0039777 Mettl3 protein_coding protein_coding MGP_C57BL6NJ_T0039778.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48390520 48400183 - MGP_C57BL6NJ_P0039778 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039779.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48390720 48391776 - Mettl3 protein_coding retained_intron MGP_C57BL6NJ_T0039780.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48391674 48393470 - Mettl3 protein_coding retained_intron MGP_C57BL6NJ_T0039781.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48392002 48394790 - Mettl3 protein_coding retained_intron MGP_C57BL6NJ_T0039782.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48392218 48400145 - MGP_C57BL6NJ_P0039782 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039783.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48392483 48400046 - MGP_C57BL6NJ_P0039783 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039784.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48393038 48400046 - MGP_C57BL6NJ_P0039784 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039785.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48393048 48400166 - MGP_C57BL6NJ_P0039785 Mettl3 protein_coding protein_coding MGP_C57BL6NJ_T0039786.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48395369 48400158 - MGP_C57BL6NJ_P0039786 Mettl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039787.1 MGP_C57BL6NJ_G0021696.1 mouse_genomes_project 14 48398679 48400183 - Mettl3 protein_coding retained_intron MGP_C57BL6NJ_T0002653.1 MGP_C57BL6NJ_G0002535.1 mouse_genomes_project 14 50559207 50559273 + MGP_C57BL6NJ_P0002653 Traj52 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040469.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67851816 67905145 - MGP_C57BL6NJ_P0040469 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040470.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67855963 67902151 - MGP_C57BL6NJ_P0040470 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040471.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67855977 67905145 - MGP_C57BL6NJ_P0040471 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040472.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67858452 67860911 - Slc39a14 protein_coding retained_intron MGP_C57BL6NJ_T0040473.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67860607 67863596 - Slc39a14 protein_coding retained_intron MGP_C57BL6NJ_T0040474.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67863629 67905134 - Slc39a14 protein_coding retained_intron MGP_C57BL6NJ_T0040475.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67864781 67902153 - Slc39a14 protein_coding retained_intron MGP_C57BL6NJ_T0040476.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67865463 67887951 - MGP_C57BL6NJ_P0040476 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040477.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67866136 67905114 - MGP_C57BL6NJ_P0040477 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040478.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67866170 67877567 - MGP_C57BL6NJ_P0040478 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040479.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67866231 67905135 - MGP_C57BL6NJ_P0040479 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040480.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67868403 67885271 - MGP_C57BL6NJ_P0040480 Slc39a14 protein_coding protein_coding MGP_C57BL6NJ_T0040481.1 MGP_C57BL6NJ_G0021939.1 mouse_genomes_project 14 67884829 67905145 - Slc39a14 protein_coding retained_intron MGP_C57BL6NJ_T0039060.1 MGP_C57BL6NJ_G0021477.1 mouse_genomes_project 14 21361530 21388118 - MGP_C57BL6NJ_P0039060 Ccdc66 protein_coding protein_coding MGP_C57BL6NJ_T0099912.1 MGP_C57BL6NJ_G0037958.1 mouse_genomes_project 14 44321928 44322035 - Gm25380 snRNA snRNA MGP_C57BL6NJ_T0006891.1 MGP_C57BL6NJ_G0005690.1 mouse_genomes_project 14 68448224 68471618 + 2410012E07Rik lincRNA lincRNA MGP_C57BL6NJ_T0002734.1 MGP_C57BL6NJ_G0002610.1 mouse_genomes_project 14 48539741 48540690 + MGP_C57BL6NJ_P0002734 Trav1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002735.1 MGP_C57BL6NJ_G0002610.1 mouse_genomes_project 14 48539780 48540690 + MGP_C57BL6NJ_P0002735 Trav1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101230.1 MGP_C57BL6NJ_G0039276.1 mouse_genomes_project 14 59870446 59870605 + Gm25162 snoRNA snoRNA MGP_C57BL6NJ_T0039391.1 MGP_C57BL6NJ_G0021569.1 mouse_genomes_project 14 31652705 31662492 + MGP_C57BL6NJ_P0039391 Lrit1 protein_coding protein_coding MGP_C57BL6NJ_T0039402.1 MGP_C57BL6NJ_G0021575.1 mouse_genomes_project 14 35824333 35910920 - MGP_C57BL6NJ_P0039402 Sh2d4b protein_coding protein_coding MGP_C57BL6NJ_T0002860.1 MGP_C57BL6NJ_G0002714.1 mouse_genomes_project 14 48975721 48976278 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0099939.1 MGP_C57BL6NJ_G0037985.1 mouse_genomes_project 14 99549851 99549973 - Gm22984 snRNA snRNA MGP_C57BL6NJ_T0040138.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54333050 54418213 - MGP_C57BL6NJ_P0040138 Xpo4 protein_coding protein_coding MGP_C57BL6NJ_T0040139.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54334319 54417739 - MGP_C57BL6NJ_P0040139 Xpo4 protein_coding protein_coding MGP_C57BL6NJ_T0040140.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54349527 54417775 - MGP_C57BL6NJ_P0040140 Xpo4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040141.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54384457 54417739 - MGP_C57BL6NJ_P0040141 Xpo4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040142.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54396781 54417747 - Xpo4 protein_coding processed_transcript MGP_C57BL6NJ_T0040143.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54396787 54418018 - Xpo4 protein_coding retained_intron MGP_C57BL6NJ_T0040144.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54396802 54417750 - Xpo4 protein_coding retained_intron MGP_C57BL6NJ_T0040145.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54397031 54418213 - MGP_C57BL6NJ_P0040145 Xpo4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040147.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54397518 54403660 - Xpo4 protein_coding retained_intron MGP_C57BL6NJ_T0040148.1 MGP_C57BL6NJ_G0021812.1 mouse_genomes_project 14 54402964 54417772 - Xpo4 protein_coding retained_intron MGP_C57BL6NJ_T0006842.1 MGP_C57BL6NJ_G0005653.1 mouse_genomes_project 14 22426545 22429864 - Gm2670 lincRNA lincRNA MGP_C57BL6NJ_T0040195.1 MGP_C57BL6NJ_G0021827.1 mouse_genomes_project 14 56371075 56413311 - MGP_C57BL6NJ_P0040195 Setdb2 protein_coding protein_coding MGP_C57BL6NJ_T0040196.1 MGP_C57BL6NJ_G0021827.1 mouse_genomes_project 14 56371077 56413304 - MGP_C57BL6NJ_P0040196 Setdb2 protein_coding protein_coding MGP_C57BL6NJ_T0040197.1 MGP_C57BL6NJ_G0021827.1 mouse_genomes_project 14 56374089 56382634 - Setdb2 protein_coding retained_intron MGP_C57BL6NJ_T0040198.1 MGP_C57BL6NJ_G0021827.1 mouse_genomes_project 14 56395438 56413302 - MGP_C57BL6NJ_P0040198 Setdb2 protein_coding protein_coding MGP_C57BL6NJ_T0040199.1 MGP_C57BL6NJ_G0021827.1 mouse_genomes_project 14 56403572 56413300 - Setdb2 protein_coding processed_transcript MGP_C57BL6NJ_T0040643.1 MGP_C57BL6NJ_G0021998.1 mouse_genomes_project 14 77481439 77520523 - MGP_C57BL6NJ_P0040643 Zfp957 protein_coding protein_coding MGP_C57BL6NJ_T0040644.1 MGP_C57BL6NJ_G0021998.1 mouse_genomes_project 14 77481441 77495795 - MGP_C57BL6NJ_P0040644 Zfp957 protein_coding protein_coding MGP_C57BL6NJ_T0040645.1 MGP_C57BL6NJ_G0021998.1 mouse_genomes_project 14 77494847 77520596 - Zfp957 protein_coding retained_intron MGP_C57BL6NJ_T0039665.1 MGP_C57BL6NJ_G0021677.1 mouse_genomes_project 14 47319907 47325000 + MGP_C57BL6NJ_P0039665 protein_coding protein_coding MGP_C57BL6NJ_T0002787.1 MGP_C57BL6NJ_G0002656.1 mouse_genomes_project 14 49957475 49957710 + MGP_C57BL6NJ_P0002787 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0038766.1 MGP_C57BL6NJ_G0021397.1 mouse_genomes_project 14 8188368 8290216 - MGP_C57BL6NJ_P0038766 Lrrc3b protein_coding protein_coding MGP_C57BL6NJ_T0038767.1 MGP_C57BL6NJ_G0021397.1 mouse_genomes_project 14 8188369 8287734 - MGP_C57BL6NJ_P0038767 Lrrc3b protein_coding protein_coding MGP_C57BL6NJ_T0039063.1 MGP_C57BL6NJ_G0021479.1 mouse_genomes_project 14 22424362 22427593 + Wnt5a protein_coding processed_transcript MGP_C57BL6NJ_T0039064.1 MGP_C57BL6NJ_G0021479.1 mouse_genomes_project 14 22424571 22443775 + MGP_C57BL6NJ_P0039064 Wnt5a protein_coding protein_coding MGP_C57BL6NJ_T0039065.1 MGP_C57BL6NJ_G0021479.1 mouse_genomes_project 14 22429089 22430397 + Wnt5a protein_coding processed_transcript MGP_C57BL6NJ_T0039066.1 MGP_C57BL6NJ_G0021479.1 mouse_genomes_project 14 22429861 22441781 + Wnt5a protein_coding processed_transcript MGP_C57BL6NJ_T0039067.1 MGP_C57BL6NJ_G0021479.1 mouse_genomes_project 14 22429922 22430379 + Wnt5a protein_coding processed_transcript MGP_C57BL6NJ_T0006892.1 MGP_C57BL6NJ_G0005691.1 mouse_genomes_project 14 73019240 73019883 - Gm15628 lincRNA lincRNA MGP_C57BL6NJ_T0039853.1 MGP_C57BL6NJ_G0021716.1 mouse_genomes_project 14 50993500 51004518 - MGP_C57BL6NJ_P0039853 Ajuba protein_coding protein_coding MGP_C57BL6NJ_T0013297.1 MGP_C57BL6NJ_G0011342.1 mouse_genomes_project 14 19911657 19912846 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001039.1 MGP_C57BL6NJ_G0000948.1 mouse_genomes_project 14 46744276 46753278 - TEC TEC MGP_C57BL6NJ_T0002763.1 MGP_C57BL6NJ_G0002636.1 mouse_genomes_project 14 49420694 49421388 + MGP_C57BL6NJ_P0002763 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040788.1 MGP_C57BL6NJ_G0022054.1 mouse_genomes_project 14 120308602 120312401 - MGP_C57BL6NJ_P0040788 Sox21 protein_coding protein_coding MGP_C57BL6NJ_T0040192.1 MGP_C57BL6NJ_G0021825.1 mouse_genomes_project 14 56179995 56205497 - MGP_C57BL6NJ_P0040192 Phf11a protein_coding protein_coding MGP_C57BL6NJ_T0040642.1 MGP_C57BL6NJ_G0021997.1 mouse_genomes_project 14 77124101 77471486 + MGP_C57BL6NJ_P0040642 Vwa8 protein_coding protein_coding MGP_C57BL6NJ_T0010231.1 MGP_C57BL6NJ_G0008316.1 mouse_genomes_project 14 116827943 116828050 + Mir20a miRNA miRNA MGP_C57BL6NJ_T0040061.1 MGP_C57BL6NJ_G0021764.1 mouse_genomes_project 14 52211049 52213784 - MGP_C57BL6NJ_P0040061 Tinf2 protein_coding protein_coding MGP_C57BL6NJ_T0040693.1 MGP_C57BL6NJ_G0022018.1 mouse_genomes_project 14 99192361 99206651 - MGP_C57BL6NJ_P0040693 Mzt1 protein_coding protein_coding MGP_C57BL6NJ_T0013331.1 MGP_C57BL6NJ_G0011376.1 mouse_genomes_project 14 51935457 51935857 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099943.1 MGP_C57BL6NJ_G0037989.1 mouse_genomes_project 14 105236738 105236845 + Gm22021 snRNA snRNA MGP_C57BL6NJ_T0040838.1 MGP_C57BL6NJ_G0022078.1 mouse_genomes_project 14 125008207 125014864 + MGP_C57BL6NJ_P0040838 Zic2 protein_coding protein_coding MGP_C57BL6NJ_T0040839.1 MGP_C57BL6NJ_G0022078.1 mouse_genomes_project 14 125010872 125011823 + Zic2 protein_coding retained_intron MGP_C57BL6NJ_T0040504.1 MGP_C57BL6NJ_G0021953.1 mouse_genomes_project 14 68227729 68338994 - MGP_C57BL6NJ_P0040504 Xpo7 protein_coding protein_coding MGP_C57BL6NJ_T0040505.1 MGP_C57BL6NJ_G0021953.1 mouse_genomes_project 14 68227729 68338994 - MGP_C57BL6NJ_P0040505 Xpo7 protein_coding protein_coding MGP_C57BL6NJ_T0101252.1 MGP_C57BL6NJ_G0039298.1 mouse_genomes_project 14 100833433 100833557 - Gm24345 snoRNA snoRNA MGP_C57BL6NJ_T0040263.1 MGP_C57BL6NJ_G0021856.1 mouse_genomes_project 14 60225478 60228433 + MGP_C57BL6NJ_P0040263 Defb47 protein_coding protein_coding MGP_C57BL6NJ_T0017846.1 MGP_C57BL6NJ_G0015662.1 mouse_genomes_project 14 40229746 40235837 - 4930431P03Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017847.1 MGP_C57BL6NJ_G0015662.1 mouse_genomes_project 14 40230949 40235837 - 4930431P03Rik processed_transcript antisense MGP_C57BL6NJ_T0040275.1 MGP_C57BL6NJ_G0021861.1 mouse_genomes_project 14 60391853 60425117 - MGP_C57BL6NJ_P0040275 Fdft1 protein_coding protein_coding MGP_C57BL6NJ_T0040226.1 MGP_C57BL6NJ_G0021837.1 mouse_genomes_project 14 57830798 57848114 + MGP_C57BL6NJ_P0040226 C1qtnf9 protein_coding protein_coding MGP_C57BL6NJ_T0003687.1 MGP_C57BL6NJ_G0003339.1 mouse_genomes_project 14 26561509 26563560 - Gm17210 antisense antisense MGP_C57BL6NJ_T0040269.1 MGP_C57BL6NJ_G0021859.1 mouse_genomes_project 14 60276807 60278427 + MGP_C57BL6NJ_P0040269 Defb42 protein_coding protein_coding MGP_C57BL6NJ_T0040270.1 MGP_C57BL6NJ_G0021859.1 mouse_genomes_project 14 60276845 60291388 + Defb42 protein_coding processed_transcript MGP_C57BL6NJ_T0040271.1 MGP_C57BL6NJ_G0021859.1 mouse_genomes_project 14 60276910 60278375 + MGP_C57BL6NJ_P0040271 Defb42 protein_coding protein_coding MGP_C57BL6NJ_T0040272.1 MGP_C57BL6NJ_G0021859.1 mouse_genomes_project 14 60278045 60278392 + MGP_C57BL6NJ_P0040272 Defb42 protein_coding protein_coding MGP_C57BL6NJ_T0040273.1 MGP_C57BL6NJ_G0021859.1 mouse_genomes_project 14 60288277 60290179 + Defb42 protein_coding processed_transcript MGP_C57BL6NJ_T0013335.1 MGP_C57BL6NJ_G0011380.1 mouse_genomes_project 14 54182150 54183541 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013281.1 MGP_C57BL6NJ_G0011326.1 mouse_genomes_project 14 5222937 5223639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003686.1 MGP_C57BL6NJ_G0003338.1 mouse_genomes_project 14 24866954 24874368 - 1700087M22Rik antisense antisense MGP_C57BL6NJ_T0039575.1 MGP_C57BL6NJ_G0021623.1 mouse_genomes_project 14 45683949 45685064 - MGP_C57BL6NJ_P0039575 Olfr724 protein_coding protein_coding MGP_C57BL6NJ_T0040277.1 MGP_C57BL6NJ_G0021863.1 mouse_genomes_project 14 60447432 60502245 - MGP_C57BL6NJ_P0040277 Gata4 protein_coding protein_coding MGP_C57BL6NJ_T0040278.1 MGP_C57BL6NJ_G0021863.1 mouse_genomes_project 14 60448885 60498122 - MGP_C57BL6NJ_P0040278 Gata4 protein_coding protein_coding MGP_C57BL6NJ_T0040279.1 MGP_C57BL6NJ_G0021863.1 mouse_genomes_project 14 60498075 60528613 - MGP_C57BL6NJ_P0040279 Gata4 protein_coding protein_coding MGP_C57BL6NJ_T0040280.1 MGP_C57BL6NJ_G0021863.1 mouse_genomes_project 14 60498088 60528045 - MGP_C57BL6NJ_P0040280 Gata4 protein_coding protein_coding MGP_C57BL6NJ_T0040281.1 MGP_C57BL6NJ_G0021863.1 mouse_genomes_project 14 60498088 60528045 - MGP_C57BL6NJ_P0040281 Gata4 protein_coding protein_coding MGP_C57BL6NJ_T0039604.1 MGP_C57BL6NJ_G0021645.1 mouse_genomes_project 14 46408024 46409858 + MGP_C57BL6NJ_P0039604 Olfr746 protein_coding protein_coding MGP_C57BL6NJ_T0039380.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31463087 31558759 - MGP_C57BL6NJ_P0039380 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039381.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31463087 31558849 - MGP_C57BL6NJ_P0039381 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039382.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31466991 31494446 - Ccser2 protein_coding processed_transcript MGP_C57BL6NJ_T0039383.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31466992 31523638 - MGP_C57BL6NJ_P0039383 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039384.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31467247 31497253 - MGP_C57BL6NJ_P0039384 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039385.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31467294 31507430 - MGP_C57BL6NJ_P0039385 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039386.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31467510 31507632 - MGP_C57BL6NJ_P0039386 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039387.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31467669 31514950 - MGP_C57BL6NJ_P0039387 Ccser2 protein_coding protein_coding MGP_C57BL6NJ_T0039388.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31467721 31474508 - Ccser2 protein_coding retained_intron MGP_C57BL6NJ_T0039389.1 MGP_C57BL6NJ_G0021567.1 mouse_genomes_project 14 31488937 31528011 - Ccser2 protein_coding processed_transcript MGP_C57BL6NJ_T0013337.1 MGP_C57BL6NJ_G0011382.1 mouse_genomes_project 14 56387248 56387543 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011628.1 MGP_C57BL6NJ_G0009713.1 mouse_genomes_project 14 26027505 26027803 - Gm22876 misc_RNA misc_RNA MGP_C57BL6NJ_T0038744.1 MGP_C57BL6NJ_G0021386.1 mouse_genomes_project 14 6352488 6365108 + MGP_C57BL6NJ_P0038744 Sntn protein_coding protein_coding MGP_C57BL6NJ_T0040103.1 MGP_C57BL6NJ_G0021792.1 mouse_genomes_project 14 52829582 52833552 - MGP_C57BL6NJ_P0040103 Gzmc protein_coding protein_coding MGP_C57BL6NJ_T0013294.1 MGP_C57BL6NJ_G0011339.1 mouse_genomes_project 14 15926353 15926725 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039986.1 MGP_C57BL6NJ_G0021751.1 mouse_genomes_project 14 52106326 52107662 + MGP_C57BL6NJ_P0039986 Fitm1 protein_coding protein_coding MGP_C57BL6NJ_T0002742.1 MGP_C57BL6NJ_G0002616.1 mouse_genomes_project 14 48796522 48796976 + MGP_C57BL6NJ_P0002742 Trav6-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002743.1 MGP_C57BL6NJ_G0002616.1 mouse_genomes_project 14 48796522 48796976 + MGP_C57BL6NJ_P0002743 Trav6-2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039068.1 MGP_C57BL6NJ_G0021480.1 mouse_genomes_project 14 22863989 23728990 - MGP_C57BL6NJ_P0039068 Cacna2d3 protein_coding protein_coding MGP_C57BL6NJ_T0101235.1 MGP_C57BL6NJ_G0039281.1 mouse_genomes_project 14 67983026 67983136 - Gm22725 snoRNA snoRNA MGP_C57BL6NJ_T0099942.1 MGP_C57BL6NJ_G0037988.1 mouse_genomes_project 14 101078182 101078283 - Gm23538 snRNA snRNA MGP_C57BL6NJ_T0017866.1 MGP_C57BL6NJ_G0015665.1 mouse_genomes_project 14 64775069 64775762 - Gm20675 processed_transcript processed_transcript MGP_C57BL6NJ_T0040622.1 MGP_C57BL6NJ_G0021987.1 mouse_genomes_project 14 75120073 75134716 - MGP_C57BL6NJ_P0040622 Lacc1 protein_coding protein_coding MGP_C57BL6NJ_T0040623.1 MGP_C57BL6NJ_G0021987.1 mouse_genomes_project 14 75130414 75134979 - Lacc1 protein_coding retained_intron MGP_C57BL6NJ_T0040624.1 MGP_C57BL6NJ_G0021987.1 mouse_genomes_project 14 75133024 75134156 - MGP_C57BL6NJ_P0040624 Lacc1 protein_coding protein_coding MGP_C57BL6NJ_T0040244.1 MGP_C57BL6NJ_G0021846.1 mouse_genomes_project 14 58712041 58719762 + MGP_C57BL6NJ_P0040244 Trim13 protein_coding protein_coding MGP_C57BL6NJ_T0010183.1 MGP_C57BL6NJ_G0008268.1 mouse_genomes_project 14 19344846 19344956 - Gm23701 miRNA miRNA MGP_C57BL6NJ_T0039589.1 MGP_C57BL6NJ_G0021634.1 mouse_genomes_project 14 46107118 46108069 - Olfr735 protein_coding transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0039590.1 MGP_C57BL6NJ_G0021634.1 mouse_genomes_project 14 46107118 46108183 - MGP_C57BL6NJ_P0039590 Olfr735 protein_coding protein_coding MGP_C57BL6NJ_T0039591.1 MGP_C57BL6NJ_G0021634.1 mouse_genomes_project 14 46107521 46110595 - Olfr735 protein_coding processed_transcript MGP_C57BL6NJ_T0039143.1 MGP_C57BL6NJ_G0021500.1 mouse_genomes_project 14 25139584 25146240 - MGP_C57BL6NJ_P0039143 Gnl3 protein_coding protein_coding MGP_C57BL6NJ_T0006825.1 MGP_C57BL6NJ_G0005643.1 mouse_genomes_project 14 13953825 13970828 - 6230400D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0002862.1 MGP_C57BL6NJ_G0002716.1 mouse_genomes_project 14 49619096 49619264 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0002717.1 MGP_C57BL6NJ_G0002595.1 mouse_genomes_project 14 50547525 50547579 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0040323.1 MGP_C57BL6NJ_G0021881.1 mouse_genomes_project 14 62570424 62639289 - MGP_C57BL6NJ_P0040323 Fzd3 protein_coding protein_coding MGP_C57BL6NJ_T0040324.1 MGP_C57BL6NJ_G0021881.1 mouse_genomes_project 14 62579117 62604122 - Fzd3 protein_coding processed_transcript MGP_C57BL6NJ_T0039269.1 MGP_C57BL6NJ_G0021522.1 mouse_genomes_project 14 26385137 26401479 + MGP_C57BL6NJ_P0039269 Msmb protein_coding protein_coding MGP_C57BL6NJ_T0039270.1 MGP_C57BL6NJ_G0021522.1 mouse_genomes_project 14 26390698 26401479 + MGP_C57BL6NJ_P0039270 Msmb protein_coding protein_coding MGP_C57BL6NJ_T0001041.1 MGP_C57BL6NJ_G0000950.1 mouse_genomes_project 14 48472400 48474748 - TEC TEC MGP_C57BL6NJ_T0040205.1 MGP_C57BL6NJ_G0021830.1 mouse_genomes_project 14 56618619 56624997 + MGP_C57BL6NJ_P0040205 Shisa2 protein_coding protein_coding MGP_C57BL6NJ_T0040352.1 MGP_C57BL6NJ_G0021893.1 mouse_genomes_project 14 63421309 63445341 - MGP_C57BL6NJ_P0040352 Gulo protein_coding protein_coding MGP_C57BL6NJ_T0040774.1 MGP_C57BL6NJ_G0022046.1 mouse_genomes_project 14 112081095 112087603 - MGP_C57BL6NJ_P0040774 Slitrk6 protein_coding protein_coding MGP_C57BL6NJ_T0101247.1 MGP_C57BL6NJ_G0039293.1 mouse_genomes_project 14 96541969 96542099 + Gm25133 snoRNA snoRNA MGP_C57BL6NJ_T0002739.1 MGP_C57BL6NJ_G0002613.1 mouse_genomes_project 14 48746096 48746613 + MGP_C57BL6NJ_P0002739 Trav5-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039293.1 MGP_C57BL6NJ_G0021529.1 mouse_genomes_project 14 26672597 26736183 - MGP_C57BL6NJ_P0039293 Chat protein_coding protein_coding MGP_C57BL6NJ_T0039666.1 MGP_C57BL6NJ_G0021678.1 mouse_genomes_project 14 47373840 47387780 + MGP_C57BL6NJ_P0039666 protein_coding protein_coding MGP_C57BL6NJ_T0003688.1 MGP_C57BL6NJ_G0003340.1 mouse_genomes_project 14 27719568 27723761 - Gm15512 antisense antisense MGP_C57BL6NJ_T0039759.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48355742 48373403 - MGP_C57BL6NJ_P0039759 Rab2b protein_coding protein_coding MGP_C57BL6NJ_T0039760.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48355749 48373156 - MGP_C57BL6NJ_P0039760 Rab2b protein_coding protein_coding MGP_C57BL6NJ_T0039761.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48355752 48363090 - Rab2b protein_coding retained_intron MGP_C57BL6NJ_T0039762.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48355754 48373197 - MGP_C57BL6NJ_P0039762 Rab2b protein_coding protein_coding MGP_C57BL6NJ_T0039763.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48357693 48372532 - Rab2b protein_coding processed_transcript MGP_C57BL6NJ_T0039764.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48357693 48373099 - MGP_C57BL6NJ_P0039764 Rab2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039765.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48357693 48373099 - MGP_C57BL6NJ_P0039765 Rab2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039766.1 MGP_C57BL6NJ_G0021694.1 mouse_genomes_project 14 48358733 48369347 - MGP_C57BL6NJ_P0039766 Rab2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039767.1 MGP_C57BL6NJ_G0021695.1 mouse_genomes_project 14 48373003 48391405 + MGP_C57BL6NJ_P0039767 Tox4 protein_coding protein_coding MGP_C57BL6NJ_T0039768.1 MGP_C57BL6NJ_G0021695.1 mouse_genomes_project 14 48373422 48387371 + Tox4 protein_coding retained_intron MGP_C57BL6NJ_T0039769.1 MGP_C57BL6NJ_G0021695.1 mouse_genomes_project 14 48373474 48373982 + Tox4 protein_coding retained_intron MGP_C57BL6NJ_T0039770.1 MGP_C57BL6NJ_G0021695.1 mouse_genomes_project 14 48373589 48382436 + Tox4 protein_coding retained_intron MGP_C57BL6NJ_T0039771.1 MGP_C57BL6NJ_G0021695.1 mouse_genomes_project 14 48380822 48382059 + Tox4 protein_coding processed_transcript MGP_C57BL6NJ_T0013300.1 MGP_C57BL6NJ_G0011345.1 mouse_genomes_project 14 20356735 20357533 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017896.1 MGP_C57BL6NJ_G0015680.1 mouse_genomes_project 14 125001226 125006067 - 2610035F20Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017897.1 MGP_C57BL6NJ_G0015680.1 mouse_genomes_project 14 125001319 125007683 - 2610035F20Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0002766.1 MGP_C57BL6NJ_G0002639.1 mouse_genomes_project 14 49590861 49591771 + MGP_C57BL6NJ_P0002766 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040299.1 MGP_C57BL6NJ_G0021871.1 mouse_genomes_project 14 61265822 61282491 - MGP_C57BL6NJ_P0040299 4930578I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0039398.1 MGP_C57BL6NJ_G0021574.1 mouse_genomes_project 14 33077654 34289805 - MGP_C57BL6NJ_P0039398 Nrg3 protein_coding protein_coding MGP_C57BL6NJ_T0039399.1 MGP_C57BL6NJ_G0021574.1 mouse_genomes_project 14 33079179 34288283 - MGP_C57BL6NJ_P0039399 Nrg3 protein_coding protein_coding MGP_C57BL6NJ_T0039400.1 MGP_C57BL6NJ_G0021574.1 mouse_genomes_project 14 33079195 34288285 - MGP_C57BL6NJ_P0039400 Nrg3 protein_coding protein_coding MGP_C57BL6NJ_T0039401.1 MGP_C57BL6NJ_G0021574.1 mouse_genomes_project 14 33793477 34288124 - Nrg3 protein_coding retained_intron MGP_C57BL6NJ_T0010232.1 MGP_C57BL6NJ_G0008317.1 mouse_genomes_project 14 116828091 116828178 + Mir19b-1 miRNA miRNA MGP_C57BL6NJ_T0002784.1 MGP_C57BL6NJ_G0002654.1 mouse_genomes_project 14 49951361 49951932 + MGP_C57BL6NJ_P0002784 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0040100.1 MGP_C57BL6NJ_G0021789.1 mouse_genomes_project 14 52761824 52765010 - MGP_C57BL6NJ_P0040100 protein_coding protein_coding MGP_C57BL6NJ_T0003741.1 MGP_C57BL6NJ_G0003380.1 mouse_genomes_project 14 124743382 124747115 - 1700108J01Rik antisense antisense MGP_C57BL6NJ_T0040741.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103632813 103678542 - MGP_C57BL6NJ_P0040741 Mycbp2 protein_coding protein_coding MGP_C57BL6NJ_T0040742.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103632813 103887309 - MGP_C57BL6NJ_P0040742 Mycbp2 protein_coding protein_coding MGP_C57BL6NJ_T0040743.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103632813 103886927 - MGP_C57BL6NJ_P0040743 Mycbp2 protein_coding protein_coding MGP_C57BL6NJ_T0040744.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103633522 103887026 - MGP_C57BL6NJ_P0040744 Mycbp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040745.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103633535 103634799 - Mycbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0040746.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103660062 103675582 - Mycbp2 protein_coding retained_intron MGP_C57BL6NJ_T0040747.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103678591 103714884 - MGP_C57BL6NJ_P0040747 Mycbp2 protein_coding protein_coding MGP_C57BL6NJ_T0040748.1 MGP_C57BL6NJ_G0022034.1 mouse_genomes_project 14 103844679 103887323 - Mycbp2 protein_coding retained_intron MGP_C57BL6NJ_T0002774.1 MGP_C57BL6NJ_G0002645.1 mouse_genomes_project 14 49822705 49823209 + MGP_C57BL6NJ_P0002774 Trav13-1 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0039538.1 MGP_C57BL6NJ_G0021613.1 mouse_genomes_project 14 44048745 44114891 + MGP_C57BL6NJ_P0039538 Tmem260 protein_coding protein_coding MGP_C57BL6NJ_T0039539.1 MGP_C57BL6NJ_G0021613.1 mouse_genomes_project 14 44048969 44103683 + Tmem260 protein_coding retained_intron MGP_C57BL6NJ_T0039540.1 MGP_C57BL6NJ_G0021613.1 mouse_genomes_project 14 44048999 44117236 + MGP_C57BL6NJ_P0039540 Tmem260 protein_coding protein_coding MGP_C57BL6NJ_T0039541.1 MGP_C57BL6NJ_G0021613.1 mouse_genomes_project 14 44049010 44114236 + MGP_C57BL6NJ_P0039541 Tmem260 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039542.1 MGP_C57BL6NJ_G0021613.1 mouse_genomes_project 14 44049015 44110473 + Tmem260 protein_coding retained_intron MGP_C57BL6NJ_T0099926.1 MGP_C57BL6NJ_G0037972.1 mouse_genomes_project 14 58437284 58437388 - Gm25716 snRNA snRNA MGP_C57BL6NJ_T0040292.1 MGP_C57BL6NJ_G0021868.1 mouse_genomes_project 14 60893949 61112717 + MGP_C57BL6NJ_P0040292 Xkr6 protein_coding protein_coding MGP_C57BL6NJ_T0040293.1 MGP_C57BL6NJ_G0021868.1 mouse_genomes_project 14 60894121 60949661 + MGP_C57BL6NJ_P0040293 Xkr6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040294.1 MGP_C57BL6NJ_G0021868.1 mouse_genomes_project 14 60894472 60946288 + MGP_C57BL6NJ_P0040294 Xkr6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040295.1 MGP_C57BL6NJ_G0021868.1 mouse_genomes_project 14 60942635 60946576 + Xkr6 protein_coding processed_transcript MGP_C57BL6NJ_T0040296.1 MGP_C57BL6NJ_G0021868.1 mouse_genomes_project 14 61086262 61111927 + MGP_C57BL6NJ_P0040296 Xkr6 protein_coding protein_coding MGP_C57BL6NJ_T0013289.1 MGP_C57BL6NJ_G0011334.1 mouse_genomes_project 14 12191184 12195307 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0039315.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27531395 27534376 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0039316.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27531539 27723196 + MGP_C57BL6NJ_P0039316 Arhgap22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0039317.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27583174 27608232 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0039318.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27659762 27723550 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0039319.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27673320 27723552 + MGP_C57BL6NJ_P0039319 Arhgap22 protein_coding protein_coding MGP_C57BL6NJ_T0039320.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27704929 27716193 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0039321.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27715914 27718094 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0039322.1 MGP_C57BL6NJ_G0021539.1 mouse_genomes_project 14 27715993 27716943 + Arhgap22 protein_coding processed_transcript MGP_C57BL6NJ_T0013340.1 MGP_C57BL6NJ_G0011385.1 mouse_genomes_project 14 60696837 60697835 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099940.1 MGP_C57BL6NJ_G0037986.1 mouse_genomes_project 14 99560755 99560911 - Gm25130 snRNA snRNA MGP_C57BL6NJ_T0013288.1 MGP_C57BL6NJ_G0011333.1 mouse_genomes_project 14 11883034 11884204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038918.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15159220 15168373 + MGP_C57BL6NJ_P0038918 Vdac2 protein_coding protein_coding MGP_C57BL6NJ_T0038919.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15159452 15173806 + MGP_C57BL6NJ_P0038919 Vdac2 protein_coding protein_coding MGP_C57BL6NJ_T0038920.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15159675 15165783 + MGP_C57BL6NJ_P0038920 Vdac2 protein_coding protein_coding MGP_C57BL6NJ_T0038921.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15161603 15165977 + Vdac2 protein_coding processed_transcript MGP_C57BL6NJ_T0038922.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15165699 15168481 + Vdac2 protein_coding retained_intron MGP_C57BL6NJ_T0038923.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15165796 15166832 + Vdac2 protein_coding retained_intron MGP_C57BL6NJ_T0038924.1 MGP_C57BL6NJ_G0021441.1 mouse_genomes_project 14 15170207 15173445 + Vdac2 protein_coding retained_intron MGP_C57BL6NJ_T0002869.1 MGP_C57BL6NJ_G0002723.1 mouse_genomes_project 14 50227155 50227707 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0040125.1 MGP_C57BL6NJ_G0021805.1 mouse_genomes_project 14 53806815 53812842 - MGP_C57BL6NJ_P0040125 Gjb2 protein_coding protein_coding MGP_C57BL6NJ_T0102837.1 MGP_C57BL6NJ_G0040631.1 mouse_genomes_project 14 12231866 12236176 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099918.1 MGP_C57BL6NJ_G0037964.1 mouse_genomes_project 14 46706571 46706675 + Gm24689 snRNA snRNA MGP_C57BL6NJ_T0040759.1 MGP_C57BL6NJ_G0022040.1 mouse_genomes_project 14 105786969 105813640 - MGP_C57BL6NJ_P0040759 Rbm26 protein_coding protein_coding MGP_C57BL6NJ_T0040760.1 MGP_C57BL6NJ_G0022040.1 mouse_genomes_project 14 105795183 105858927 - MGP_C57BL6NJ_P0040760 Rbm26 protein_coding protein_coding MGP_C57BL6NJ_T0040761.1 MGP_C57BL6NJ_G0022040.1 mouse_genomes_project 14 105795204 105859390 - MGP_C57BL6NJ_P0040761 Rbm26 protein_coding protein_coding MGP_C57BL6NJ_T0040762.1 MGP_C57BL6NJ_G0022040.1 mouse_genomes_project 14 105795281 105859394 - MGP_C57BL6NJ_P0040762 Rbm26 protein_coding protein_coding MGP_C57BL6NJ_T0040763.1 MGP_C57BL6NJ_G0022040.1 mouse_genomes_project 14 105796259 105859331 - MGP_C57BL6NJ_P0040763 Rbm26 protein_coding protein_coding MGP_C57BL6NJ_T0013280.1 MGP_C57BL6NJ_G0011325.1 mouse_genomes_project 14 3668296 3669122 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038815.1 MGP_C57BL6NJ_G0021409.1 mouse_genomes_project 14 12944469 13008040 + MGP_C57BL6NJ_P0038815 Nid2 protein_coding protein_coding MGP_C57BL6NJ_T0039656.1 MGP_C57BL6NJ_G0021673.1 mouse_genomes_project 14 47123248 47124095 - MGP_C57BL6NJ_P0039656 Rnase2a protein_coding protein_coding MGP_C57BL6NJ_T0039141.1 MGP_C57BL6NJ_G0021499.1 mouse_genomes_project 14 25127142 25139592 + MGP_C57BL6NJ_P0039141 Glt8d1 protein_coding protein_coding MGP_C57BL6NJ_T0039142.1 MGP_C57BL6NJ_G0021499.1 mouse_genomes_project 14 25127182 25139592 + MGP_C57BL6NJ_P0039142 Glt8d1 protein_coding protein_coding MGP_C57BL6NJ_T0013287.1 MGP_C57BL6NJ_G0011332.1 mouse_genomes_project 14 11755865 11757964 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040733.1 MGP_C57BL6NJ_G0022031.1 mouse_genomes_project 14 103547900 103558306 + MGP_C57BL6NJ_P0040733 Acod1 protein_coding protein_coding MGP_C57BL6NJ_T0102838.1 MGP_C57BL6NJ_G0040632.1 mouse_genomes_project 14 12264366 12267361 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0002716.1 MGP_C57BL6NJ_G0002594.1 mouse_genomes_project 14 50546597 50546669 + TR_J_pseudogene TR_J_pseudogene MGP_C57BL6NJ_T0006843.1 MGP_C57BL6NJ_G0005654.1 mouse_genomes_project 14 26110640 26135009 + D830044D21Rik lincRNA lincRNA MGP_C57BL6NJ_T0003667.1 MGP_C57BL6NJ_G0003327.1 mouse_genomes_project 14 6616059 6651544 + Gm11100 antisense antisense MGP_C57BL6NJ_T0003668.1 MGP_C57BL6NJ_G0003327.1 mouse_genomes_project 14 6632349 6651544 + Gm11100 antisense antisense MGP_C57BL6NJ_T0039639.1 MGP_C57BL6NJ_G0021659.1 mouse_genomes_project 14 46743975 46745616 + MGP_C57BL6NJ_P0039639 Pnp2 protein_coding protein_coding MGP_C57BL6NJ_T0017844.1 MGP_C57BL6NJ_G0015661.1 mouse_genomes_project 14 40078422 40232952 + processed_transcript processed_transcript MGP_C57BL6NJ_T0017845.1 MGP_C57BL6NJ_G0015661.1 mouse_genomes_project 14 40078705 40253767 + processed_transcript processed_transcript MGP_C57BL6NJ_T0013333.1 MGP_C57BL6NJ_G0011378.1 mouse_genomes_project 14 52848858 52849867 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038833.1 MGP_C57BL6NJ_G0021419.1 mouse_genomes_project 14 13641612 13643928 - MGP_C57BL6NJ_P0038833 Mrps16 protein_coding protein_coding MGP_C57BL6NJ_T0002630.1 MGP_C57BL6NJ_G0002517.1 mouse_genomes_project 14 50534498 50540461 + MGP_C57BL6NJ_P0002630 Trdc TR_C_gene TR_C_gene MGP_C57BL6NJ_T0006851.1 MGP_C57BL6NJ_G0005661.1 mouse_genomes_project 14 41119151 41385740 + lincRNA lincRNA MGP_C57BL6NJ_T0040680.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92569226 93533230 - MGP_C57BL6NJ_P0040680 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040681.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92569518 93533230 - MGP_C57BL6NJ_P0040681 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040682.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92569791 93533190 - MGP_C57BL6NJ_P0040682 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040683.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92570015 93532720 - MGP_C57BL6NJ_P0040683 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040684.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92571328 93531293 - MGP_C57BL6NJ_P0040684 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040685.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 92742031 93528309 - MGP_C57BL6NJ_P0040685 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0040686.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 93528129 93528785 - Pcdh9 protein_coding retained_intron MGP_C57BL6NJ_T0040687.1 MGP_C57BL6NJ_G0022014.1 mouse_genomes_project 14 93528673 93533240 - MGP_C57BL6NJ_P0040687 Pcdh9 protein_coding protein_coding MGP_C57BL6NJ_T0003703.1 MGP_C57BL6NJ_G0003354.1 mouse_genomes_project 14 51428581 51429481 + Mhrt antisense antisense MGP_C57BL6NJ_T0003704.1 MGP_C57BL6NJ_G0003354.1 mouse_genomes_project 14 51428690 51434252 + Mhrt antisense antisense MGP_C57BL6NJ_T0010204.1 MGP_C57BL6NJ_G0008289.1 mouse_genomes_project 14 60079091 60079201 + Mir6541 miRNA miRNA MGP_C57BL6NJ_T0006897.1 MGP_C57BL6NJ_G0005695.1 mouse_genomes_project 14 103485030 103489339 + Gm26778 lincRNA lincRNA MGP_C57BL6NJ_T0001049.1 MGP_C57BL6NJ_G0000958.1 mouse_genomes_project 14 64454477 64455849 + TEC TEC MGP_C57BL6NJ_T0039935.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588139 51596096 - MGP_C57BL6NJ_P0039935 Ap1g2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039936.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588411 51588950 - Ap1g2 protein_coding retained_intron MGP_C57BL6NJ_T0039937.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588411 51595829 - MGP_C57BL6NJ_P0039937 Ap1g2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039938.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588411 51596110 - MGP_C57BL6NJ_P0039938 Ap1g2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039939.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588411 51596155 - MGP_C57BL6NJ_P0039939 Ap1g2 protein_coding protein_coding MGP_C57BL6NJ_T0039940.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588416 51595709 - MGP_C57BL6NJ_P0039940 Ap1g2 protein_coding protein_coding MGP_C57BL6NJ_T0039941.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51588615 51595694 - Ap1g2 protein_coding processed_transcript MGP_C57BL6NJ_T0039942.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51589996 51590349 - Ap1g2 protein_coding retained_intron MGP_C57BL6NJ_T0039943.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51591911 51594072 - Ap1g2 protein_coding retained_intron MGP_C57BL6NJ_T0039944.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51592194 51594453 - Ap1g2 protein_coding retained_intron MGP_C57BL6NJ_T0039945.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51595267 51596123 - Ap1g2 protein_coding retained_intron MGP_C57BL6NJ_T0039946.1 MGP_C57BL6NJ_G0021741.1 mouse_genomes_project 14 51595486 51596070 - Ap1g2 protein_coding processed_transcript MGP_C57BL6NJ_T0040215.1 MGP_C57BL6NJ_G0021834.1 mouse_genomes_project 14 57297545 57337117 + MGP_C57BL6NJ_P0040215 Mtmr6 protein_coding protein_coding MGP_C57BL6NJ_T0001042.1 MGP_C57BL6NJ_G0000951.1 mouse_genomes_project 14 51320614 51323290 + TEC TEC MGP_C57BL6NJ_T0040327.1 MGP_C57BL6NJ_G0021883.1 mouse_genomes_project 14 62738824 62779076 + MGP_C57BL6NJ_P0040327 Zfp395 protein_coding protein_coding MGP_C57BL6NJ_T0039416.1 MGP_C57BL6NJ_G0021580.1 mouse_genomes_project 14 36135026 36154058 + MGP_C57BL6NJ_P0039416 Mat1a protein_coding protein_coding MGP_C57BL6NJ_T0039818.1 MGP_C57BL6NJ_G0021707.1 mouse_genomes_project 14 50680840 50681871 - MGP_C57BL6NJ_P0039818 Olfr49 protein_coding protein_coding MGP_C57BL6NJ_T0099008.1 MGP_C57BL6NJ_G0037072.1 mouse_genomes_project 14 71731473 71731579 - Gm22164 rRNA rRNA MGP_C57BL6NJ_T0040646.1 MGP_C57BL6NJ_G0021999.1 mouse_genomes_project 14 77562970 77575708 - MGP_C57BL6NJ_P0040646 Rgcc protein_coding protein_coding MGP_C57BL6NJ_T0040515.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70215825 70389218 - MGP_C57BL6NJ_P0040515 Fndc3a protein_coding protein_coding MGP_C57BL6NJ_T0040516.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70217408 70285612 - MGP_C57BL6NJ_P0040516 Fndc3a protein_coding protein_coding MGP_C57BL6NJ_T0040517.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70241042 70244288 - Fndc3a protein_coding retained_intron MGP_C57BL6NJ_T0040518.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70244311 70404967 - MGP_C57BL6NJ_P0040518 Fndc3a protein_coding protein_coding MGP_C57BL6NJ_T0040519.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70254135 70338729 - MGP_C57BL6NJ_P0040519 Fndc3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040520.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70281024 70405422 - Fndc3a protein_coding retained_intron MGP_C57BL6NJ_T0040521.1 MGP_C57BL6NJ_G0021956.1 mouse_genomes_project 14 70335899 70405268 - Fndc3a protein_coding retained_intron MGP_C57BL6NJ_T0039951.1 MGP_C57BL6NJ_G0021743.1 mouse_genomes_project 14 51722160 51738849 + MGP_C57BL6NJ_P0039951 Dhrs2 protein_coding protein_coding MGP_C57BL6NJ_T0039952.1 MGP_C57BL6NJ_G0021743.1 mouse_genomes_project 14 51732079 51738662 + MGP_C57BL6NJ_P0039952 Dhrs2 protein_coding protein_coding MGP_C57BL6NJ_T0040446.1 MGP_C57BL6NJ_G0021928.1 mouse_genomes_project 14 67205004 67220575 - MGP_C57BL6NJ_P0040446 Chmp7 protein_coding protein_coding MGP_C57BL6NJ_T0006829.1 MGP_C57BL6NJ_G0005646.1 mouse_genomes_project 14 18136371 18140497 + 4931403M11Rik lincRNA lincRNA MGP_C57BL6NJ_T0102847.1 MGP_C57BL6NJ_G0040641.1 mouse_genomes_project 14 39060139 39060572 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099938.1 MGP_C57BL6NJ_G0037984.1 mouse_genomes_project 14 98752532 98752639 + Gm26139 snRNA snRNA MGP_C57BL6NJ_T0038688.1 MGP_C57BL6NJ_G0021367.1 mouse_genomes_project 14 112566 113037 + MGP_C57BL6NJ_P0038688 Gm26661 protein_coding protein_coding MGP_C57BL6NJ_T0038746.1 MGP_C57BL6NJ_G0021388.1 mouse_genomes_project 14 6650999 6663485 - MGP_C57BL6NJ_P0038746 Thoc7 protein_coding protein_coding MGP_C57BL6NJ_T0002679.1 MGP_C57BL6NJ_G0002559.1 mouse_genomes_project 14 50588281 50588341 + MGP_C57BL6NJ_P0002679 Traj26 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0001040.1 MGP_C57BL6NJ_G0000949.1 mouse_genomes_project 14 48351151 48358211 + TEC TEC MGP_C57BL6NJ_T0102856.1 MGP_C57BL6NJ_G0040650.1 mouse_genomes_project 14 48665959 48668686 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0040786.1 MGP_C57BL6NJ_G0022052.1 mouse_genomes_project 14 120178897 120201378 - MGP_C57BL6NJ_P0040786 Tgds protein_coding protein_coding MGP_C57BL6NJ_T0101248.1 MGP_C57BL6NJ_G0039294.1 mouse_genomes_project 14 96935160 96935252 + Gm24770 snoRNA snoRNA MGP_C57BL6NJ_T0039724.1 MGP_C57BL6NJ_G0021690.1 mouse_genomes_project 14 48127859 48171628 - MGP_C57BL6NJ_P0039724 Hnrnpc protein_coding protein_coding MGP_C57BL6NJ_T0039725.1 MGP_C57BL6NJ_G0021690.1 mouse_genomes_project 14 48127859 48171628 - MGP_C57BL6NJ_P0039725 Hnrnpc protein_coding protein_coding MGP_C57BL6NJ_T0039609.1 MGP_C57BL6NJ_G0021649.1 mouse_genomes_project 14 46525755 46545877 - MGP_C57BL6NJ_P0039609 Ttc5 protein_coding protein_coding MGP_C57BL6NJ_T0013315.1 MGP_C57BL6NJ_G0011360.1 mouse_genomes_project 14 45407648 45408025 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006902.1 MGP_C57BL6NJ_G0005699.1 mouse_genomes_project 14 120446799 120467663 + Gm26791 lincRNA lincRNA MGP_C57BL6NJ_T0040136.1 MGP_C57BL6NJ_G0021810.1 mouse_genomes_project 14 54268226 54290919 + MGP_C57BL6NJ_P0040136 Il17d protein_coding protein_coding MGP_C57BL6NJ_T0039968.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087338 52097398 + MGP_C57BL6NJ_P0039968 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039969.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087350 52088774 + MGP_C57BL6NJ_P0039969 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039970.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087353 52088089 + Dcaf11 protein_coding processed_transcript MGP_C57BL6NJ_T0039971.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087357 52090266 + MGP_C57BL6NJ_P0039971 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039972.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087394 52097397 + MGP_C57BL6NJ_P0039972 Dcaf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039973.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087453 52096868 + Dcaf11 protein_coding retained_intron MGP_C57BL6NJ_T0039974.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087814 52088432 + Dcaf11 protein_coding processed_transcript MGP_C57BL6NJ_T0039975.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087844 52097264 + MGP_C57BL6NJ_P0039975 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039976.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087850 52088776 + MGP_C57BL6NJ_P0039976 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039977.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087865 52091736 + MGP_C57BL6NJ_P0039977 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039978.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52087866 52097394 + MGP_C57BL6NJ_P0039978 Dcaf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039979.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52088261 52097395 + MGP_C57BL6NJ_P0039979 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039980.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52088303 52091113 + MGP_C57BL6NJ_P0039980 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039981.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52088316 52097397 + Dcaf11 protein_coding retained_intron MGP_C57BL6NJ_T0039982.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52088399 52097264 + MGP_C57BL6NJ_P0039982 Dcaf11 protein_coding protein_coding MGP_C57BL6NJ_T0039983.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52088399 52097264 + MGP_C57BL6NJ_P0039983 Dcaf11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039984.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52091723 52092176 + Dcaf11 protein_coding retained_intron MGP_C57BL6NJ_T0039985.1 MGP_C57BL6NJ_G0021750.1 mouse_genomes_project 14 52093194 52096722 + Dcaf11 protein_coding processed_transcript MGP_C57BL6NJ_T0101226.1 MGP_C57BL6NJ_G0039272.1 mouse_genomes_project 14 54066168 54066288 - Gm23593 snoRNA snoRNA MGP_C57BL6NJ_T0040638.1 MGP_C57BL6NJ_G0021995.1 mouse_genomes_project 14 76679928 76727822 - MGP_C57BL6NJ_P0040638 Akap11 protein_coding protein_coding MGP_C57BL6NJ_T0040639.1 MGP_C57BL6NJ_G0021995.1 mouse_genomes_project 14 76679928 76727874 - MGP_C57BL6NJ_P0040639 Akap11 protein_coding protein_coding MGP_C57BL6NJ_T0003743.1 MGP_C57BL6NJ_G0003382.1 mouse_genomes_project 14 126570780 126572190 + Gm28932 antisense antisense MGP_C57BL6NJ_T0013310.1 MGP_C57BL6NJ_G0011355.1 mouse_genomes_project 14 41078906 41079107 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040028.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52156706 52166991 - MGP_C57BL6NJ_P0040028 Ipo4 protein_coding protein_coding MGP_C57BL6NJ_T0040029.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52156940 52166938 - MGP_C57BL6NJ_P0040029 Ipo4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040030.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157022 52157739 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040031.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157025 52158870 - Ipo4 protein_coding processed_transcript MGP_C57BL6NJ_T0040032.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157028 52157724 - Ipo4 protein_coding processed_transcript MGP_C57BL6NJ_T0040033.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157030 52158697 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040034.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157046 52167264 - MGP_C57BL6NJ_P0040034 Ipo4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040035.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52157202 52169202 - Ipo4 protein_coding processed_transcript MGP_C57BL6NJ_T0040036.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52158604 52159231 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040037.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52160089 52161967 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040038.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52164234 52164965 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040039.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52165063 52166517 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0040040.1 MGP_C57BL6NJ_G0021758.1 mouse_genomes_project 14 52165354 52166876 - Ipo4 protein_coding retained_intron MGP_C57BL6NJ_T0038998.1 MGP_C57BL6NJ_G0021460.1 mouse_genomes_project 14 19916255 19938501 + Cphx1 protein_coding processed_transcript MGP_C57BL6NJ_T0039000.1 MGP_C57BL6NJ_G0021460.1 mouse_genomes_project 14 19916984 19939904 + MGP_C57BL6NJ_P0039000 Cphx1 protein_coding protein_coding MGP_C57BL6NJ_T0002664.1 MGP_C57BL6NJ_G0002544.1 mouse_genomes_project 14 50569633 50569697 + MGP_C57BL6NJ_P0002664 Traj42 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0040109.1 MGP_C57BL6NJ_G0021797.1 mouse_genomes_project 14 53196762 53282781 + MGP_C57BL6NJ_P0040109 Parp4 protein_coding protein_coding MGP_C57BL6NJ_T0040110.1 MGP_C57BL6NJ_G0021797.1 mouse_genomes_project 14 53278321 53282779 + Parp4 protein_coding retained_intron MGP_C57BL6NJ_T0039257.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26311782 26321911 + MGP_C57BL6NJ_P0039257 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039258.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26311784 26326779 + MGP_C57BL6NJ_P0039258 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039259.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26311821 26337729 + MGP_C57BL6NJ_P0039259 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039260.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312195 26329866 + MGP_C57BL6NJ_P0039260 Oxnad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039261.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312219 26337729 + MGP_C57BL6NJ_P0039261 Oxnad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039262.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312234 26329735 + MGP_C57BL6NJ_P0039262 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039263.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312242 26330277 + Oxnad1 protein_coding retained_intron MGP_C57BL6NJ_T0039264.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312242 26326859 + MGP_C57BL6NJ_P0039264 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039265.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26312285 26326819 + MGP_C57BL6NJ_P0039265 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039266.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26325633 26337182 + MGP_C57BL6NJ_P0039266 Oxnad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0039267.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26325696 26337379 + MGP_C57BL6NJ_P0039267 Oxnad1 protein_coding protein_coding MGP_C57BL6NJ_T0039268.1 MGP_C57BL6NJ_G0021521.1 mouse_genomes_project 14 26331052 26336809 + Oxnad1 protein_coding retained_intron MGP_C57BL6NJ_T0002861.1 MGP_C57BL6NJ_G0002715.1 mouse_genomes_project 14 49414191 49414656 + TR_V_pseudogene TR_V_pseudogene MGP_C57BL6NJ_T0040405.1 MGP_C57BL6NJ_G0021909.1 mouse_genomes_project 14 65298404 65322129 + MGP_C57BL6NJ_P0040405 Kctd9 protein_coding protein_coding MGP_C57BL6NJ_T0040406.1 MGP_C57BL6NJ_G0021909.1 mouse_genomes_project 14 65298565 65324778 + MGP_C57BL6NJ_P0040406 Kctd9 protein_coding protein_coding MGP_C57BL6NJ_T0040407.1 MGP_C57BL6NJ_G0021909.1 mouse_genomes_project 14 65298607 65312164 + MGP_C57BL6NJ_P0040407 Kctd9 protein_coding protein_coding MGP_C57BL6NJ_T0040408.1 MGP_C57BL6NJ_G0021909.1 mouse_genomes_project 14 65298752 65324629 + MGP_C57BL6NJ_P0040408 Kctd9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040409.1 MGP_C57BL6NJ_G0021909.1 mouse_genomes_project 14 65298773 65324630 + MGP_C57BL6NJ_P0040409 Kctd9 protein_coding protein_coding MGP_C57BL6NJ_T0040300.1 MGP_C57BL6NJ_G0021872.1 mouse_genomes_project 14 61287141 61333173 + MGP_C57BL6NJ_P0040300 Rp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0099936.1 MGP_C57BL6NJ_G0037982.1 mouse_genomes_project 14 96381568 96381684 + Gm24043 snRNA snRNA MGP_C57BL6NJ_T0039963.1 MGP_C57BL6NJ_G0021747.1 mouse_genomes_project 14 52040526 52047273 - MGP_C57BL6NJ_P0039963 Nrl protein_coding protein_coding MGP_C57BL6NJ_T0039964.1 MGP_C57BL6NJ_G0021747.1 mouse_genomes_project 14 52041076 52048063 - MGP_C57BL6NJ_P0039964 Nrl protein_coding protein_coding MGP_C57BL6NJ_T0039965.1 MGP_C57BL6NJ_G0021747.1 mouse_genomes_project 14 52041076 52048047 - MGP_C57BL6NJ_P0039965 Nrl protein_coding protein_coding MGP_C57BL6NJ_T0010195.1 MGP_C57BL6NJ_G0008280.1 mouse_genomes_project 14 51071673 51071735 - Mir6948 miRNA miRNA MGP_C57BL6NJ_T0039089.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24668552 24688181 - MGP_C57BL6NJ_P0039089 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039090.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24668560 24704221 - MGP_C57BL6NJ_P0039090 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039091.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24668562 24688181 - MGP_C57BL6NJ_P0039091 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039092.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24668798 24685701 - MGP_C57BL6NJ_P0039092 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039093.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24668857 24673412 - Prkcd protein_coding retained_intron MGP_C57BL6NJ_T0039094.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24671611 24685701 - MGP_C57BL6NJ_P0039094 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039095.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24671611 24685701 - MGP_C57BL6NJ_P0039095 Prkcd protein_coding protein_coding MGP_C57BL6NJ_T0039096.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24673466 24704185 - Prkcd protein_coding retained_intron MGP_C57BL6NJ_T0039097.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24675665 24681450 - Prkcd protein_coding retained_intron MGP_C57BL6NJ_T0039098.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24675774 24681259 - Prkcd protein_coding retained_intron MGP_C57BL6NJ_T0039099.1 MGP_C57BL6NJ_G0021489.1 mouse_genomes_project 14 24679711 24685224 - Prkcd protein_coding retained_intron MGP_C57BL6NJ_T0010193.1 MGP_C57BL6NJ_G0008278.1 mouse_genomes_project 14 45261648 45261753 - Gm22949 miRNA miRNA MGP_C57BL6NJ_T0038732.1 MGP_C57BL6NJ_G0021382.1 mouse_genomes_project 14 4866425 4885464 + MGP_C57BL6NJ_P0038732 3830406C13Rik protein_coding protein_coding MGP_C57BL6NJ_T0038733.1 MGP_C57BL6NJ_G0021382.1 mouse_genomes_project 14 4866425 4885464 + MGP_C57BL6NJ_P0038733 3830406C13Rik protein_coding protein_coding MGP_C57BL6NJ_T0001054.1 MGP_C57BL6NJ_G0000963.1 mouse_genomes_project 14 68992589 68993118 - TEC TEC MGP_C57BL6NJ_T0038828.1 MGP_C57BL6NJ_G0021417.1 mouse_genomes_project 14 13598552 13618943 + MGP_C57BL6NJ_P0038828 Fam149b protein_coding protein_coding MGP_C57BL6NJ_T0038829.1 MGP_C57BL6NJ_G0021417.1 mouse_genomes_project 14 13598552 13633871 + MGP_C57BL6NJ_P0038829 Fam149b protein_coding protein_coding MGP_C57BL6NJ_T0038830.1 MGP_C57BL6NJ_G0021417.1 mouse_genomes_project 14 13598552 13633871 + MGP_C57BL6NJ_P0038830 Fam149b protein_coding protein_coding MGP_C57BL6NJ_T0038831.1 MGP_C57BL6NJ_G0021417.1 mouse_genomes_project 14 13598612 13633871 + MGP_C57BL6NJ_P0038831 Fam149b protein_coding protein_coding MGP_C57BL6NJ_T0010011.1 MGP_C57BL6NJ_G0008096.1 mouse_genomes_project 12 90891676 90891755 - Mir3068 miRNA miRNA MGP_C57BL6NJ_T0035740.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86695922 86739841 + MGP_C57BL6NJ_P0035740 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035741.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86695980 86711731 + MGP_C57BL6NJ_P0035741 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035742.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696893 86748536 + MGP_C57BL6NJ_P0035742 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035743.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696894 86716797 + MGP_C57BL6NJ_P0035743 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035744.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696898 86711729 + MGP_C57BL6NJ_P0035744 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035745.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696932 86724888 + MGP_C57BL6NJ_P0035745 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035746.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696947 86708197 + MGP_C57BL6NJ_P0035746 Rbm25 protein_coding protein_coding MGP_C57BL6NJ_T0035747.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86696967 86729423 + MGP_C57BL6NJ_P0035747 Rbm25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035748.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86699383 86704884 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0035749.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86708052 86716816 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0035750.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86708137 86747433 + MGP_C57BL6NJ_P0035750 Rbm25 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035751.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86708197 86733907 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0035752.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86711680 86717176 + Rbm25 protein_coding processed_transcript MGP_C57BL6NJ_T0035753.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86713728 86717533 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0035754.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86723948 86725008 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0035755.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86728399 86729423 + Rbm25 protein_coding processed_transcript MGP_C57BL6NJ_T0035756.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86739948 86741535 + Rbm25 protein_coding processed_transcript MGP_C57BL6NJ_T0035757.1 MGP_C57BL6NJ_G0020304.1 mouse_genomes_project 12 86740276 86743322 + Rbm25 protein_coding retained_intron MGP_C57BL6NJ_T0003544.1 MGP_C57BL6NJ_G0003243.1 mouse_genomes_project 12 57304800 57374916 + Gm26973 antisense antisense MGP_C57BL6NJ_T0003545.1 MGP_C57BL6NJ_G0003243.1 mouse_genomes_project 12 57308087 57338910 + Gm26973 antisense antisense MGP_C57BL6NJ_T0003546.1 MGP_C57BL6NJ_G0003243.1 mouse_genomes_project 12 57308138 57374953 + Gm26973 antisense antisense MGP_C57BL6NJ_T0035398.1 MGP_C57BL6NJ_G0020185.1 mouse_genomes_project 12 71243713 71244337 - MGP_C57BL6NJ_P0035398 Gm9887 protein_coding protein_coding MGP_C57BL6NJ_T0035119.1 MGP_C57BL6NJ_G0020075.1 mouse_genomes_project 12 34648559 34688914 - MGP_C57BL6NJ_P0035119 Ahr protein_coding protein_coding MGP_C57BL6NJ_T0035120.1 MGP_C57BL6NJ_G0020075.1 mouse_genomes_project 12 34655445 34688499 - MGP_C57BL6NJ_P0035120 Ahr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035121.1 MGP_C57BL6NJ_G0020075.1 mouse_genomes_project 12 34664991 34678698 - Ahr protein_coding retained_intron MGP_C57BL6NJ_T0013153.1 MGP_C57BL6NJ_G0011198.1 mouse_genomes_project 12 112235704 112236185 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035312.1 MGP_C57BL6NJ_G0020156.1 mouse_genomes_project 12 59855880 59911423 - MGP_C57BL6NJ_P0035312 Sec23a protein_coding protein_coding MGP_C57BL6NJ_T0035313.1 MGP_C57BL6NJ_G0020156.1 mouse_genomes_project 12 59857201 59906525 - MGP_C57BL6NJ_P0035313 Sec23a protein_coding protein_coding MGP_C57BL6NJ_T0035314.1 MGP_C57BL6NJ_G0020156.1 mouse_genomes_project 12 59864144 59869617 - Sec23a protein_coding retained_intron MGP_C57BL6NJ_T0035315.1 MGP_C57BL6NJ_G0020156.1 mouse_genomes_project 12 59871337 59881873 - Sec23a protein_coding retained_intron MGP_C57BL6NJ_T0035316.1 MGP_C57BL6NJ_G0020156.1 mouse_genomes_project 12 59905943 59911423 - Sec23a protein_coding retained_intron MGP_C57BL6NJ_T0036342.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114435690 114469363 - MGP_C57BL6NJ_P0036342 Wars protein_coding protein_coding MGP_C57BL6NJ_T0036343.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114435690 114470339 - MGP_C57BL6NJ_P0036343 Wars protein_coding protein_coding MGP_C57BL6NJ_T0036344.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114435690 114470302 - MGP_C57BL6NJ_P0036344 Wars protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036345.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114435694 114469362 - MGP_C57BL6NJ_P0036345 Wars protein_coding protein_coding MGP_C57BL6NJ_T0036346.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114441498 114451390 - Wars protein_coding retained_intron MGP_C57BL6NJ_T0036347.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114451222 114470266 - MGP_C57BL6NJ_P0036347 Wars protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036348.1 MGP_C57BL6NJ_G0020496.1 mouse_genomes_project 12 114456864 114464526 - Wars protein_coding retained_intron MGP_C57BL6NJ_T0009991.1 MGP_C57BL6NJ_G0008076.1 mouse_genomes_project 12 44045828 44045889 + Mir5627 miRNA miRNA MGP_C57BL6NJ_T0102781.1 MGP_C57BL6NJ_G0040575.1 mouse_genomes_project 12 108887867 108900415 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0035777.1 MGP_C57BL6NJ_G0020311.1 mouse_genomes_project 12 87108648 87124941 + MGP_C57BL6NJ_P0035777 Acot1 protein_coding protein_coding MGP_C57BL6NJ_T0035092.1 MGP_C57BL6NJ_G0020064.1 mouse_genomes_project 12 32008924 32071663 - MGP_C57BL6NJ_P0035092 Cdhr3 protein_coding protein_coding MGP_C57BL6NJ_T0035973.1 MGP_C57BL6NJ_G0020372.1 mouse_genomes_project 12 90678431 90708383 - MGP_C57BL6NJ_P0035973 Vipas39 protein_coding protein_coding MGP_C57BL6NJ_T0035974.1 MGP_C57BL6NJ_G0020372.1 mouse_genomes_project 12 90678431 90706341 - MGP_C57BL6NJ_P0035974 Vipas39 protein_coding protein_coding MGP_C57BL6NJ_T0035975.1 MGP_C57BL6NJ_G0020372.1 mouse_genomes_project 12 90678431 90708383 - MGP_C57BL6NJ_P0035975 Vipas39 protein_coding protein_coding MGP_C57BL6NJ_T0034840.1 MGP_C57BL6NJ_G0019976.1 mouse_genomes_project 12 5697101 5699324 - MGP_C57BL6NJ_P0034840 Rhob protein_coding protein_coding MGP_C57BL6NJ_T0035126.1 MGP_C57BL6NJ_G0020078.1 mouse_genomes_project 12 35188217 35220018 - MGP_C57BL6NJ_P0035126 Tspan13 protein_coding protein_coding MGP_C57BL6NJ_T0035127.1 MGP_C57BL6NJ_G0020078.1 mouse_genomes_project 12 35197865 35220029 - MGP_C57BL6NJ_P0035127 Tspan13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035128.1 MGP_C57BL6NJ_G0020078.1 mouse_genomes_project 12 35197876 35217464 - MGP_C57BL6NJ_P0035128 Tspan13 protein_coding protein_coding MGP_C57BL6NJ_T0099850.1 MGP_C57BL6NJ_G0037896.1 mouse_genomes_project 12 83704241 83704348 + Gm23298 snRNA snRNA MGP_C57BL6NJ_T0000155.1 MGP_C57BL6NJ_G0000115.1 mouse_genomes_project 12 121421090 121715512 - MGP_C57BL6NJ_P0000155 Ighv8-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000383.1 MGP_C57BL6NJ_G0000302.1 mouse_genomes_project 12 121767765 121768249 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0009977.1 MGP_C57BL6NJ_G0008062.1 mouse_genomes_project 12 8784084 8784142 + Mir7675 miRNA miRNA MGP_C57BL6NJ_T0036485.1 MGP_C57BL6NJ_G0020538.1 mouse_genomes_project 12 118497836 118510215 - MGP_C57BL6NJ_P0036485 Tmem179 protein_coding protein_coding MGP_C57BL6NJ_T0035668.1 MGP_C57BL6NJ_G0020285.1 mouse_genomes_project 12 83753245 83767933 - MGP_C57BL6NJ_P0035668 Slc10a1 protein_coding protein_coding MGP_C57BL6NJ_T0099857.1 MGP_C57BL6NJ_G0037903.1 mouse_genomes_project 12 114438191 114438297 - Gm22079 snRNA snRNA MGP_C57BL6NJ_T0000032.1 MGP_C57BL6NJ_G0000024.1 mouse_genomes_project 12 119529366 119529383 - MGP_C57BL6NJ_P0000032 Ighd2-5 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0036448.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117720157 117773605 + MGP_C57BL6NJ_P0036448 Klc1 protein_coding protein_coding MGP_C57BL6NJ_T0036449.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117720264 117761743 + MGP_C57BL6NJ_P0036449 Klc1 protein_coding protein_coding MGP_C57BL6NJ_T0036450.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117720321 117773557 + MGP_C57BL6NJ_P0036450 Klc1 protein_coding protein_coding MGP_C57BL6NJ_T0036451.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117734488 117761741 + MGP_C57BL6NJ_P0036451 Klc1 protein_coding protein_coding MGP_C57BL6NJ_T0036452.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117747114 117774674 + MGP_C57BL6NJ_P0036452 Klc1 protein_coding protein_coding MGP_C57BL6NJ_T0036453.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117752029 117754739 + Klc1 protein_coding retained_intron MGP_C57BL6NJ_T0036454.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117756278 117761244 + Klc1 protein_coding processed_transcript MGP_C57BL6NJ_T0036455.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117762197 117773556 + Klc1 protein_coding retained_intron MGP_C57BL6NJ_T0036461.1 MGP_C57BL6NJ_G0020527.1 mouse_genomes_project 12 117772333 117773541 + Klc1 protein_coding retained_intron MGP_C57BL6NJ_T0003536.1 MGP_C57BL6NJ_G0003235.1 mouse_genomes_project 12 717895 720847 - Dnmt3aos antisense antisense MGP_C57BL6NJ_T0010024.1 MGP_C57BL6NJ_G0008109.1 mouse_genomes_project 12 114272457 114272534 - Gm23872 miRNA miRNA MGP_C57BL6NJ_T0003543.1 MGP_C57BL6NJ_G0003242.1 mouse_genomes_project 12 54557097 54574424 - 1700060O08Rik antisense antisense MGP_C57BL6NJ_T0010039.1 MGP_C57BL6NJ_G0008124.1 mouse_genomes_project 12 115242529 115242671 + Mir434 miRNA miRNA MGP_C57BL6NJ_T0036114.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105439808 105530396 + MGP_C57BL6NJ_P0036114 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036115.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105439829 105530140 + MGP_C57BL6NJ_P0036115 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036116.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105439837 105557385 + MGP_C57BL6NJ_P0036116 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036117.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105439846 105530140 + MGP_C57BL6NJ_P0036117 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036118.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105439887 105498357 + MGP_C57BL6NJ_P0036118 9030617O03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036119.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105448663 105530134 + MGP_C57BL6NJ_P0036119 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036120.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105525036 105533185 + MGP_C57BL6NJ_P0036120 9030617O03Rik protein_coding protein_coding MGP_C57BL6NJ_T0036125.1 MGP_C57BL6NJ_G0020410.1 mouse_genomes_project 12 105545195 105555893 + 9030617O03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0035159.1 MGP_C57BL6NJ_G0020090.1 mouse_genomes_project 12 39564448 39596200 - MGP_C57BL6NJ_P0035159 Arl4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035160.1 MGP_C57BL6NJ_G0020090.1 mouse_genomes_project 12 39564448 39596209 - MGP_C57BL6NJ_P0035160 Arl4a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035161.1 MGP_C57BL6NJ_G0020090.1 mouse_genomes_project 12 39568457 39573319 - Arl4a protein_coding processed_transcript MGP_C57BL6NJ_T0035162.1 MGP_C57BL6NJ_G0020090.1 mouse_genomes_project 12 39592123 39596262 - MGP_C57BL6NJ_P0035162 Arl4a protein_coding protein_coding MGP_C57BL6NJ_T0035163.1 MGP_C57BL6NJ_G0020090.1 mouse_genomes_project 12 39594654 39596858 - MGP_C57BL6NJ_P0035163 Arl4a protein_coding protein_coding MGP_C57BL6NJ_T0034807.1 MGP_C57BL6NJ_G0019958.1 mouse_genomes_project 12 1145665 1390962 - MGP_C57BL6NJ_P0034807 Ncoa1 protein_coding protein_coding MGP_C57BL6NJ_T0035776.1 MGP_C57BL6NJ_G0020310.1 mouse_genomes_project 12 87039915 87071370 - MGP_C57BL6NJ_P0035776 Heatr4 protein_coding protein_coding MGP_C57BL6NJ_T0035570.1 MGP_C57BL6NJ_G0020244.1 mouse_genomes_project 12 78773257 78782497 + MGP_C57BL6NJ_P0035570 Akap5 protein_coding protein_coding MGP_C57BL6NJ_T0035571.1 MGP_C57BL6NJ_G0020244.1 mouse_genomes_project 12 78773257 78782499 + MGP_C57BL6NJ_P0035571 Akap5 protein_coding protein_coding MGP_C57BL6NJ_T0035572.1 MGP_C57BL6NJ_G0020244.1 mouse_genomes_project 12 78773271 78778349 + MGP_C57BL6NJ_P0035572 Akap5 protein_coding protein_coding MGP_C57BL6NJ_T0102775.1 MGP_C57BL6NJ_G0040570.1 mouse_genomes_project 12 49061739 49063929 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0034902.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14525588 14618911 - MGP_C57BL6NJ_P0034902 Greb1 protein_coding protein_coding MGP_C57BL6NJ_T0034903.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14525588 14669958 - MGP_C57BL6NJ_P0034903 Greb1 protein_coding protein_coding MGP_C57BL6NJ_T0034904.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14527052 14618865 - MGP_C57BL6NJ_P0034904 Greb1 protein_coding protein_coding MGP_C57BL6NJ_T0034905.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14528782 14530014 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034906.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14536890 14547873 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034907.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14547601 14601948 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034908.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14562637 14568295 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034909.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14566410 14568726 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034910.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14566421 14568866 - MGP_C57BL6NJ_P0034910 Greb1 protein_coding protein_coding MGP_C57BL6NJ_T0034911.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14568157 14572045 - MGP_C57BL6NJ_P0034911 Greb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034912.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14583450 14601822 - Greb1 protein_coding retained_intron MGP_C57BL6NJ_T0034913.1 MGP_C57BL6NJ_G0020002.1 mouse_genomes_project 12 14594971 14670181 - MGP_C57BL6NJ_P0034913 Greb1 protein_coding protein_coding MGP_C57BL6NJ_T0011581.1 MGP_C57BL6NJ_G0009666.1 mouse_genomes_project 12 15611878 15612184 - Gm25925 misc_RNA misc_RNA MGP_C57BL6NJ_T0006664.1 MGP_C57BL6NJ_G0005534.1 mouse_genomes_project 12 116711978 116714919 - Gm26912 lincRNA lincRNA MGP_C57BL6NJ_T0013156.1 MGP_C57BL6NJ_G0011201.1 mouse_genomes_project 12 113011361 113012207 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035780.1 MGP_C57BL6NJ_G0020313.1 mouse_genomes_project 12 87163924 87172555 + MGP_C57BL6NJ_P0035780 Acot3 protein_coding protein_coding MGP_C57BL6NJ_T0035781.1 MGP_C57BL6NJ_G0020313.1 mouse_genomes_project 12 87163931 87172555 + MGP_C57BL6NJ_P0035781 Acot3 protein_coding protein_coding MGP_C57BL6NJ_T0099822.1 MGP_C57BL6NJ_G0037868.1 mouse_genomes_project 12 52121341 52121443 - Gm22663 snRNA snRNA MGP_C57BL6NJ_T0036401.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116852149 116855837 - MGP_C57BL6NJ_P0036401 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036402.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116853222 116855052 - MGP_C57BL6NJ_P0036402 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036403.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116853223 116855740 - MGP_C57BL6NJ_P0036403 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036404.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116853223 116855818 - MGP_C57BL6NJ_P0036404 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036405.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116853223 116855415 - MGP_C57BL6NJ_P0036405 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036406.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116853225 116855792 - MGP_C57BL6NJ_P0036406 Ankrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036407.1 MGP_C57BL6NJ_G0020511.1 mouse_genomes_project 12 116854768 116855376 - Ankrd9 protein_coding processed_transcript MGP_C57BL6NJ_T0000096.1 MGP_C57BL6NJ_G0000077.1 mouse_genomes_project 12 120291785 120292262 - MGP_C57BL6NJ_P0000096 Ighv14-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036003.1 MGP_C57BL6NJ_G0020381.1 mouse_genomes_project 12 91654778 91655212 + MGP_C57BL6NJ_P0036003 protein_coding protein_coding MGP_C57BL6NJ_T0011595.1 MGP_C57BL6NJ_G0009680.1 mouse_genomes_project 12 94822130 94822453 + Gm26477 misc_RNA misc_RNA MGP_C57BL6NJ_T0000345.1 MGP_C57BL6NJ_G0000264.1 mouse_genomes_project 12 120273719 120274018 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035797.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419423 87453953 + MGP_C57BL6NJ_P0035797 Ptgr2 protein_coding protein_coding MGP_C57BL6NJ_T0035798.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419556 87439863 + Ptgr2 protein_coding retained_intron MGP_C57BL6NJ_T0035799.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419565 87446295 + MGP_C57BL6NJ_P0035799 Ptgr2 protein_coding protein_coding MGP_C57BL6NJ_T0035800.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419572 87434206 + Ptgr2 protein_coding retained_intron MGP_C57BL6NJ_T0035801.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419575 87444272 + Ptgr2 protein_coding processed_transcript MGP_C57BL6NJ_T0035802.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419590 87441919 + Ptgr2 protein_coding processed_transcript MGP_C57BL6NJ_T0035803.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419591 87452223 + MGP_C57BL6NJ_P0035803 Ptgr2 protein_coding protein_coding MGP_C57BL6NJ_T0035804.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419597 87452975 + MGP_C57BL6NJ_P0035804 Ptgr2 protein_coding protein_coding MGP_C57BL6NJ_T0035805.1 MGP_C57BL6NJ_G0020319.1 mouse_genomes_project 12 87419604 87452223 + MGP_C57BL6NJ_P0035805 Ptgr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101106.1 MGP_C57BL6NJ_G0039152.1 mouse_genomes_project 12 40971497 40971629 - Gm25497 snoRNA snoRNA MGP_C57BL6NJ_T0006577.1 MGP_C57BL6NJ_G0005477.1 mouse_genomes_project 12 49566022 49588183 + 3110039M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0006578.1 MGP_C57BL6NJ_G0005477.1 mouse_genomes_project 12 49567029 49587961 + 3110039M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0035254.1 MGP_C57BL6NJ_G0020129.1 mouse_genomes_project 12 55601971 55602343 - MGP_C57BL6NJ_P0035254 Gm20403 protein_coding protein_coding MGP_C57BL6NJ_T0000357.1 MGP_C57BL6NJ_G0000276.1 mouse_genomes_project 12 120780189 120780487 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0098987.1 MGP_C57BL6NJ_G0037051.1 mouse_genomes_project 12 85545070 85545173 - n-R5s63 rRNA rRNA MGP_C57BL6NJ_T0010051.1 MGP_C57BL6NJ_G0008136.1 mouse_genomes_project 12 115364747 115364796 - Mir299b miRNA miRNA MGP_C57BL6NJ_T0000026.1 MGP_C57BL6NJ_G0000018.1 mouse_genomes_project 12 119500625 119500641 - MGP_C57BL6NJ_P0000026 Ighd3-2 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0013154.1 MGP_C57BL6NJ_G0011199.1 mouse_genomes_project 12 112572786 112573777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036415.1 MGP_C57BL6NJ_G0020515.1 mouse_genomes_project 12 117172135 117177704 + MGP_C57BL6NJ_P0036415 Amn protein_coding protein_coding MGP_C57BL6NJ_T0098988.1 MGP_C57BL6NJ_G0037052.1 mouse_genomes_project 12 94643063 94643180 + n-R5s65 rRNA rRNA MGP_C57BL6NJ_T0035822.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87522875 87567107 - MGP_C57BL6NJ_P0035822 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035823.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87522875 87567107 - MGP_C57BL6NJ_P0035823 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035824.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87522893 87570658 - MGP_C57BL6NJ_P0035824 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035825.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87522896 87570643 - MGP_C57BL6NJ_P0035825 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035826.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87525695 87562859 - MGP_C57BL6NJ_P0035826 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035827.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87526027 87562810 - MGP_C57BL6NJ_P0035827 Entpd5 protein_coding protein_coding MGP_C57BL6NJ_T0035828.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87529375 87545715 - Entpd5 protein_coding retained_intron MGP_C57BL6NJ_T0035829.1 MGP_C57BL6NJ_G0020323.1 mouse_genomes_project 12 87565328 87570613 - Entpd5 protein_coding processed_transcript MGP_C57BL6NJ_T0003548.1 MGP_C57BL6NJ_G0003245.1 mouse_genomes_project 12 58296093 58307249 - Gm16246 antisense antisense MGP_C57BL6NJ_T0013165.1 MGP_C57BL6NJ_G0011210.1 mouse_genomes_project 12 121619087 121619673 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013167.1 MGP_C57BL6NJ_G0011212.1 mouse_genomes_project 12 122002987 122003316 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013169.1 MGP_C57BL6NJ_G0011214.1 mouse_genomes_project 12 122093661 122094644 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010058.1 MGP_C57BL6NJ_G0008143.1 mouse_genomes_project 12 115369420 115369505 + Mir494 miRNA miRNA MGP_C57BL6NJ_T0000142.1 MGP_C57BL6NJ_G0000108.1 mouse_genomes_project 12 121202609 121202903 - MGP_C57BL6NJ_P0000142 Ighv1-24 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000143.1 MGP_C57BL6NJ_G0000108.1 mouse_genomes_project 12 121202609 121203043 - MGP_C57BL6NJ_P0000143 Ighv1-24 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035246.1 MGP_C57BL6NJ_G0020126.1 mouse_genomes_project 12 55356246 55402112 - MGP_C57BL6NJ_P0035246 Snx6 protein_coding protein_coding MGP_C57BL6NJ_T0036092.1 MGP_C57BL6NJ_G0020402.1 mouse_genomes_project 12 104283109 104453931 - MGP_C57BL6NJ_P0036092 Efcab11 protein_coding protein_coding MGP_C57BL6NJ_T0035879.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463645 88470789 + MGP_C57BL6NJ_P0035879 Eif2b2 protein_coding protein_coding MGP_C57BL6NJ_T0035880.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463668 88467004 + MGP_C57BL6NJ_P0035880 Eif2b2 protein_coding protein_coding MGP_C57BL6NJ_T0035881.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463677 88470311 + MGP_C57BL6NJ_P0035881 Eif2b2 protein_coding protein_coding MGP_C57BL6NJ_T0035882.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463679 88464114 + Eif2b2 protein_coding retained_intron MGP_C57BL6NJ_T0035883.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463710 88466991 + Eif2b2 protein_coding retained_intron MGP_C57BL6NJ_T0035884.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88463746 88467653 + Eif2b2 protein_coding retained_intron MGP_C57BL6NJ_T0035885.1 MGP_C57BL6NJ_G0020343.1 mouse_genomes_project 12 88468686 88470654 + Eif2b2 protein_coding retained_intron MGP_C57BL6NJ_T0000101.1 MGP_C57BL6NJ_G0000080.1 mouse_genomes_project 12 120350360 120350790 - MGP_C57BL6NJ_P0000101 Ighv9-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036364.1 MGP_C57BL6NJ_G0020500.1 mouse_genomes_project 12 115237377 115248421 - MGP_C57BL6NJ_P0036364 Rtl1 protein_coding protein_coding MGP_C57BL6NJ_T0035359.1 MGP_C57BL6NJ_G0020169.1 mouse_genomes_project 12 66552540 66579965 + MGP_C57BL6NJ_P0035359 Prpf39 protein_coding protein_coding MGP_C57BL6NJ_T0035360.1 MGP_C57BL6NJ_G0020169.1 mouse_genomes_project 12 66552573 66579965 + MGP_C57BL6NJ_P0035360 Prpf39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035115.1 MGP_C57BL6NJ_G0020072.1 mouse_genomes_project 12 33972455 33973554 - MGP_C57BL6NJ_P0035115 4921508M14Rik protein_coding protein_coding MGP_C57BL6NJ_T0035263.1 MGP_C57BL6NJ_G0020135.1 mouse_genomes_project 12 55868830 55906007 + MGP_C57BL6NJ_P0035263 protein_coding protein_coding MGP_C57BL6NJ_T0035264.1 MGP_C57BL6NJ_G0020135.1 mouse_genomes_project 12 55869280 55905547 + MGP_C57BL6NJ_P0035264 protein_coding protein_coding MGP_C57BL6NJ_T0013127.1 MGP_C57BL6NJ_G0011172.1 mouse_genomes_project 12 81792671 81793099 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000144.1 MGP_C57BL6NJ_G0000109.1 mouse_genomes_project 12 121255227 121255661 - MGP_C57BL6NJ_P0000144 Ighv1-39 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035876.1 MGP_C57BL6NJ_G0020340.1 mouse_genomes_project 12 88340967 88366782 + MGP_C57BL6NJ_P0035876 Dlst protein_coding protein_coding MGP_C57BL6NJ_T0035273.1 MGP_C57BL6NJ_G0020139.1 mouse_genomes_project 12 56052677 56092363 + MGP_C57BL6NJ_P0035273 Psma6 protein_coding protein_coding MGP_C57BL6NJ_T0035274.1 MGP_C57BL6NJ_G0020139.1 mouse_genomes_project 12 56068431 56092507 + MGP_C57BL6NJ_P0035274 Psma6 protein_coding protein_coding MGP_C57BL6NJ_T0035275.1 MGP_C57BL6NJ_G0020139.1 mouse_genomes_project 12 56068451 56092494 + MGP_C57BL6NJ_P0035275 Psma6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035276.1 MGP_C57BL6NJ_G0020139.1 mouse_genomes_project 12 56077360 56083437 + Psma6 protein_coding processed_transcript MGP_C57BL6NJ_T0036149.1 MGP_C57BL6NJ_G0020419.1 mouse_genomes_project 12 106827323 106857954 + MGP_C57BL6NJ_P0036149 Cpsf2 protein_coding protein_coding MGP_C57BL6NJ_T0035188.1 MGP_C57BL6NJ_G0020098.1 mouse_genomes_project 12 41081974 41117539 - MGP_C57BL6NJ_P0035188 Lrrn3 protein_coding protein_coding MGP_C57BL6NJ_T0010098.1 MGP_C57BL6NJ_G0008183.1 mouse_genomes_project 12 118770262 118770332 + Mir6940 miRNA miRNA MGP_C57BL6NJ_T0006618.1 MGP_C57BL6NJ_G0005511.1 mouse_genomes_project 12 110048266 110048908 - Gm28875 lincRNA lincRNA MGP_C57BL6NJ_T0000120.1 MGP_C57BL6NJ_G0000092.1 mouse_genomes_project 12 120636669 120637103 - MGP_C57BL6NJ_P0000120 Ighv12-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035459.1 MGP_C57BL6NJ_G0020205.1 mouse_genomes_project 12 73145638 73157381 + MGP_C57BL6NJ_P0035459 Tomm20l protein_coding protein_coding MGP_C57BL6NJ_T0035238.1 MGP_C57BL6NJ_G0020122.1 mouse_genomes_project 12 53706342 54567207 + MGP_C57BL6NJ_P0035238 Npas3 protein_coding protein_coding MGP_C57BL6NJ_T0035239.1 MGP_C57BL6NJ_G0020122.1 mouse_genomes_project 12 53706342 54567208 + MGP_C57BL6NJ_P0035239 Npas3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006603.1 MGP_C57BL6NJ_G0005496.1 mouse_genomes_project 12 89269501 89287452 - Gm26531 lincRNA lincRNA MGP_C57BL6NJ_T0035462.1 MGP_C57BL6NJ_G0020207.1 mouse_genomes_project 12 73170999 73279534 + MGP_C57BL6NJ_P0035462 2700049A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0035463.1 MGP_C57BL6NJ_G0020207.1 mouse_genomes_project 12 73170999 73279534 + MGP_C57BL6NJ_P0035463 2700049A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0035464.1 MGP_C57BL6NJ_G0020207.1 mouse_genomes_project 12 73184598 73190478 + MGP_C57BL6NJ_P0035464 2700049A03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035465.1 MGP_C57BL6NJ_G0020207.1 mouse_genomes_project 12 73207282 73279530 + MGP_C57BL6NJ_P0035465 2700049A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0034809.1 MGP_C57BL6NJ_G0019960.1 mouse_genomes_project 12 1519940 1649006 + MGP_C57BL6NJ_P0034809 Itsn2 protein_coding protein_coding MGP_C57BL6NJ_T0034810.1 MGP_C57BL6NJ_G0019960.1 mouse_genomes_project 12 1540196 1605644 + MGP_C57BL6NJ_P0034810 Itsn2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0009988.1 MGP_C57BL6NJ_G0008073.1 mouse_genomes_project 12 36262474 36262575 - Gm44326 miRNA miRNA MGP_C57BL6NJ_T0009987.1 MGP_C57BL6NJ_G0008072.1 mouse_genomes_project 12 36071635 36071709 + Mir5099 miRNA miRNA MGP_C57BL6NJ_T0035582.1 MGP_C57BL6NJ_G0020249.1 mouse_genomes_project 12 78903524 78910301 + MGP_C57BL6NJ_P0035582 Gm10451 protein_coding protein_coding MGP_C57BL6NJ_T0001001.1 MGP_C57BL6NJ_G0000911.1 mouse_genomes_project 12 118337738 118340483 - TEC TEC MGP_C57BL6NJ_T0101135.1 MGP_C57BL6NJ_G0039181.1 mouse_genomes_project 12 111504241 111504373 + Gm24986 snoRNA snoRNA MGP_C57BL6NJ_T0034772.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 653615 696400 + Dnmt3a protein_coding retained_intron MGP_C57BL6NJ_T0034773.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 654131 727410 + Dnmt3a protein_coding retained_intron MGP_C57BL6NJ_T0034774.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 654160 733303 + MGP_C57BL6NJ_P0034774 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034775.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 654641 758743 + MGP_C57BL6NJ_P0034775 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034776.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 688572 773182 + MGP_C57BL6NJ_P0034776 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034777.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 708237 773322 + MGP_C57BL6NJ_P0034777 Dnmt3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034778.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 719623 724765 + MGP_C57BL6NJ_P0034778 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034779.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 724793 736001 + MGP_C57BL6NJ_P0034779 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034780.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 745387 757869 + MGP_C57BL6NJ_P0034780 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034781.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 753475 773277 + MGP_C57BL6NJ_P0034781 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034782.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 756571 757424 + MGP_C57BL6NJ_P0034782 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034783.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 756616 758724 + MGP_C57BL6NJ_P0034783 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034784.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 757340 759113 + MGP_C57BL6NJ_P0034784 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0034785.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 759167 763353 + Dnmt3a protein_coding retained_intron MGP_C57BL6NJ_T0034786.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 763948 772227 + MGP_C57BL6NJ_P0034786 Dnmt3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034787.1 MGP_C57BL6NJ_G0019951.1 mouse_genomes_project 12 772250 773982 + MGP_C57BL6NJ_P0034787 Dnmt3a protein_coding protein_coding MGP_C57BL6NJ_T0035433.1 MGP_C57BL6NJ_G0020198.1 mouse_genomes_project 12 72151510 72198223 - MGP_C57BL6NJ_P0035433 Pygl protein_coding protein_coding MGP_C57BL6NJ_T0035434.1 MGP_C57BL6NJ_G0020198.1 mouse_genomes_project 12 72158093 72158536 - Pygl protein_coding processed_transcript MGP_C57BL6NJ_T0035435.1 MGP_C57BL6NJ_G0020198.1 mouse_genomes_project 12 72177126 72198252 - Pygl protein_coding retained_intron MGP_C57BL6NJ_T0035436.1 MGP_C57BL6NJ_G0020198.1 mouse_genomes_project 12 72180606 72197985 - Pygl protein_coding processed_transcript MGP_C57BL6NJ_T0036535.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119187732 119195294 + Crip1 protein_coding processed_transcript MGP_C57BL6NJ_T0036536.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119190119 119195261 + MGP_C57BL6NJ_P0036536 Crip1 protein_coding protein_coding MGP_C57BL6NJ_T0036537.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119193426 119195292 + MGP_C57BL6NJ_P0036537 Crip1 protein_coding protein_coding MGP_C57BL6NJ_T0036538.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119193467 119195294 + MGP_C57BL6NJ_P0036538 Crip1 protein_coding protein_coding MGP_C57BL6NJ_T0036539.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119193485 119195294 + Crip1 protein_coding retained_intron MGP_C57BL6NJ_T0036540.1 MGP_C57BL6NJ_G0020559.1 mouse_genomes_project 12 119193495 119195294 + Crip1 protein_coding retained_intron MGP_C57BL6NJ_T0010027.1 MGP_C57BL6NJ_G0008112.1 mouse_genomes_project 12 115211808 115211902 + Mir770 miRNA miRNA MGP_C57BL6NJ_T0000168.1 MGP_C57BL6NJ_G0000126.1 mouse_genomes_project 12 121965574 121966007 - MGP_C57BL6NJ_P0000168 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035190.1 MGP_C57BL6NJ_G0020100.1 mouse_genomes_project 12 44055418 44142124 + MGP_C57BL6NJ_P0035190 Pnpla8 protein_coding protein_coding MGP_C57BL6NJ_T0035191.1 MGP_C57BL6NJ_G0020100.1 mouse_genomes_project 12 44096839 44142276 + MGP_C57BL6NJ_P0035191 Pnpla8 protein_coding protein_coding MGP_C57BL6NJ_T0035192.1 MGP_C57BL6NJ_G0020100.1 mouse_genomes_project 12 44104355 44113162 + MGP_C57BL6NJ_P0035192 Pnpla8 protein_coding protein_coding MGP_C57BL6NJ_T0035193.1 MGP_C57BL6NJ_G0020100.1 mouse_genomes_project 12 44112844 44142375 + MGP_C57BL6NJ_P0035193 Pnpla8 protein_coding protein_coding MGP_C57BL6NJ_T0035194.1 MGP_C57BL6NJ_G0020100.1 mouse_genomes_project 12 44128177 44141876 + MGP_C57BL6NJ_P0035194 Pnpla8 protein_coding protein_coding MGP_C57BL6NJ_T0011579.1 MGP_C57BL6NJ_G0009664.1 mouse_genomes_project 12 1302272 1302558 + Gm22343 misc_RNA misc_RNA MGP_C57BL6NJ_T0036397.1 MGP_C57BL6NJ_G0020508.1 mouse_genomes_project 12 116719981 116741147 + MGP_C57BL6NJ_P0036397 Zfp839 protein_coding protein_coding MGP_C57BL6NJ_T0010001.1 MGP_C57BL6NJ_G0008086.1 mouse_genomes_project 12 74221275 74221384 - Gm24466 miRNA miRNA MGP_C57BL6NJ_T0036002.1 MGP_C57BL6NJ_G0020380.1 mouse_genomes_project 12 91631784 91649350 - MGP_C57BL6NJ_P0036002 protein_coding protein_coding MGP_C57BL6NJ_T0036280.1 MGP_C57BL6NJ_G0020477.1 mouse_genomes_project 12 110795945 110798212 + MGP_C57BL6NJ_P0036280 Bdkrb1 protein_coding protein_coding MGP_C57BL6NJ_T0036281.1 MGP_C57BL6NJ_G0020477.1 mouse_genomes_project 12 110795979 110797855 + MGP_C57BL6NJ_P0036281 Bdkrb1 protein_coding protein_coding MGP_C57BL6NJ_T0036282.1 MGP_C57BL6NJ_G0020477.1 mouse_genomes_project 12 110796963 110798301 + MGP_C57BL6NJ_P0036282 Bdkrb1 protein_coding protein_coding MGP_C57BL6NJ_T0101098.1 MGP_C57BL6NJ_G0039144.1 mouse_genomes_project 12 26995089 26995221 + Gm25564 snoRNA snoRNA MGP_C57BL6NJ_T0098985.1 MGP_C57BL6NJ_G0037049.1 mouse_genomes_project 12 70446392 70446510 + n-R5s61 rRNA rRNA MGP_C57BL6NJ_T0000997.1 MGP_C57BL6NJ_G0000907.1 mouse_genomes_project 12 92971629 92973539 - TEC TEC MGP_C57BL6NJ_T0010055.1 MGP_C57BL6NJ_G0008140.1 mouse_genomes_project 12 115366610 115366696 + Mir323 miRNA miRNA MGP_C57BL6NJ_T0036242.1 MGP_C57BL6NJ_G0020453.1 mouse_genomes_project 12 109171292 109176338 + MGP_C57BL6NJ_P0036242 Serpina5 protein_coding protein_coding MGP_C57BL6NJ_T0006592.1 MGP_C57BL6NJ_G0005487.1 mouse_genomes_project 12 80773501 80785263 + lincRNA lincRNA MGP_C57BL6NJ_T0006593.1 MGP_C57BL6NJ_G0005487.1 mouse_genomes_project 12 80774990 80777373 + lincRNA lincRNA MGP_C57BL6NJ_T0006594.1 MGP_C57BL6NJ_G0005487.1 mouse_genomes_project 12 80777293 80785362 + lincRNA lincRNA MGP_C57BL6NJ_T0036023.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94839913 95238176 - MGP_C57BL6NJ_P0036023 Cep128 protein_coding protein_coding MGP_C57BL6NJ_T0036024.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94839913 95115361 - MGP_C57BL6NJ_P0036024 Cep128 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036025.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94840761 94908337 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036026.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94840763 94875955 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036027.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94840763 94875955 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036028.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94840986 95031640 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036029.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 94868282 95031693 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036030.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95063960 95108476 - MGP_C57BL6NJ_P0036030 Cep128 protein_coding protein_coding MGP_C57BL6NJ_T0036031.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95133156 95238176 - Cep128 protein_coding retained_intron MGP_C57BL6NJ_T0036032.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95171117 95185190 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036033.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95191542 95238126 - Cep128 protein_coding retained_intron MGP_C57BL6NJ_T0036034.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95193364 95238176 - Cep128 protein_coding processed_transcript MGP_C57BL6NJ_T0036035.1 MGP_C57BL6NJ_G0020387.1 mouse_genomes_project 12 95216035 95238120 - Cep128 protein_coding retained_intron MGP_C57BL6NJ_T0013106.1 MGP_C57BL6NJ_G0011151.1 mouse_genomes_project 12 49305194 49306205 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101145.1 MGP_C57BL6NJ_G0039191.1 mouse_genomes_project 12 115305172 115305244 + Gm26922 snoRNA snoRNA MGP_C57BL6NJ_T0034739.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 232709 315396 + MGP_C57BL6NJ_P0034739 Asxl2 protein_coding protein_coding MGP_C57BL6NJ_T0034740.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 232709 315401 + MGP_C57BL6NJ_P0034740 Asxl2 protein_coding protein_coding MGP_C57BL6NJ_T0034741.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 232736 303873 + MGP_C57BL6NJ_P0034741 Asxl2 protein_coding protein_coding MGP_C57BL6NJ_T0034742.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 232753 310206 + MGP_C57BL6NJ_P0034742 Asxl2 protein_coding protein_coding MGP_C57BL6NJ_T0034743.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 232764 261655 + Asxl2 protein_coding retained_intron MGP_C57BL6NJ_T0034744.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 249327 303998 + MGP_C57BL6NJ_P0034744 Asxl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034745.1 MGP_C57BL6NJ_G0019949.1 mouse_genomes_project 12 301349 313320 + Asxl2 protein_coding processed_transcript MGP_C57BL6NJ_T0034996.1 MGP_C57BL6NJ_G0020029.1 mouse_genomes_project 12 24979213 24994536 + MGP_C57BL6NJ_P0034996 Cmpk2 protein_coding protein_coding MGP_C57BL6NJ_T0036208.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380625 108389042 + MGP_C57BL6NJ_P0036208 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036209.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380625 108389042 + MGP_C57BL6NJ_P0036209 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036210.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380625 108389042 + MGP_C57BL6NJ_P0036210 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036211.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380626 108389074 + MGP_C57BL6NJ_P0036211 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036212.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380659 108386471 + Ifi27 protein_coding retained_intron MGP_C57BL6NJ_T0036213.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380673 108389074 + MGP_C57BL6NJ_P0036213 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036214.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380699 108385808 + Ifi27 protein_coding retained_intron MGP_C57BL6NJ_T0036215.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108380706 108386363 + MGP_C57BL6NJ_P0036215 Ifi27 protein_coding protein_coding MGP_C57BL6NJ_T0036216.1 MGP_C57BL6NJ_G0020441.1 mouse_genomes_project 12 108386461 108389074 + Ifi27 protein_coding retained_intron MGP_C57BL6NJ_T0034812.1 MGP_C57BL6NJ_G0019962.1 mouse_genomes_project 12 1648872 1677895 - MGP_C57BL6NJ_P0034812 Fam228a protein_coding protein_coding MGP_C57BL6NJ_T0034788.1 MGP_C57BL6NJ_G0019952.1 mouse_genomes_project 12 824380 830048 + MGP_C57BL6NJ_P0034788 Pomc protein_coding protein_coding MGP_C57BL6NJ_T0101158.1 MGP_C57BL6NJ_G0039204.1 mouse_genomes_project 12 115342495 115342563 + Gm25224 snoRNA snoRNA MGP_C57BL6NJ_T0013151.1 MGP_C57BL6NJ_G0011196.1 mouse_genomes_project 12 111830630 111832299 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036272.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110400919 110406907 - MGP_C57BL6NJ_P0036272 Tcl1 protein_coding protein_coding MGP_C57BL6NJ_T0036273.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110400927 110406886 - MGP_C57BL6NJ_P0036273 Tcl1 protein_coding protein_coding MGP_C57BL6NJ_T0036274.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110401477 110406876 - MGP_C57BL6NJ_P0036274 Tcl1 protein_coding protein_coding MGP_C57BL6NJ_T0036275.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110401667 110406963 - MGP_C57BL6NJ_P0036275 Tcl1 protein_coding protein_coding MGP_C57BL6NJ_T0036276.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110401763 110406866 - MGP_C57BL6NJ_P0036276 Tcl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036277.1 MGP_C57BL6NJ_G0020474.1 mouse_genomes_project 12 110402459 110406795 - Tcl1 protein_coding processed_transcript MGP_C57BL6NJ_T0035583.1 MGP_C57BL6NJ_G0020250.1 mouse_genomes_project 12 79002505 79050180 + MGP_C57BL6NJ_P0035583 Plekhg3 protein_coding protein_coding MGP_C57BL6NJ_T0035584.1 MGP_C57BL6NJ_G0020250.1 mouse_genomes_project 12 79013939 79049549 + MGP_C57BL6NJ_P0035584 Plekhg3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035585.1 MGP_C57BL6NJ_G0020250.1 mouse_genomes_project 12 79029646 79049549 + MGP_C57BL6NJ_P0035585 Plekhg3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035909.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89123886 89160533 + MGP_C57BL6NJ_P0035909 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035910.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89123900 89198022 + MGP_C57BL6NJ_P0035910 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035911.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89123934 89187729 + MGP_C57BL6NJ_P0035911 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035912.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89123937 89362236 + MGP_C57BL6NJ_P0035912 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035913.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124195 89324670 + MGP_C57BL6NJ_P0035913 Ttll5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035914.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124196 89361684 + MGP_C57BL6NJ_P0035914 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035915.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124205 89173361 + Ttll5 protein_coding processed_transcript MGP_C57BL6NJ_T0035916.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124205 89362235 + MGP_C57BL6NJ_P0035916 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035917.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124212 89145690 + MGP_C57BL6NJ_P0035917 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035918.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124248 89147585 + Ttll5 protein_coding retained_intron MGP_C57BL6NJ_T0035919.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124248 89151220 + MGP_C57BL6NJ_P0035919 Ttll5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035920.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89124302 89362235 + MGP_C57BL6NJ_P0035920 Ttll5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035921.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89125711 89361685 + MGP_C57BL6NJ_P0035921 Ttll5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035922.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89182284 89195476 + Ttll5 protein_coding retained_intron MGP_C57BL6NJ_T0035923.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89216837 89236041 + MGP_C57BL6NJ_P0035923 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035924.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89222056 89362235 + MGP_C57BL6NJ_P0035924 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035925.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89229109 89321418 + MGP_C57BL6NJ_P0035925 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035926.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89239707 89362235 + MGP_C57BL6NJ_P0035926 Ttll5 protein_coding protein_coding MGP_C57BL6NJ_T0035927.1 MGP_C57BL6NJ_G0020354.1 mouse_genomes_project 12 89246319 89369930 + MGP_C57BL6NJ_P0035927 Ttll5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035107.1 MGP_C57BL6NJ_G0020066.1 mouse_genomes_project 12 32397693 32404109 + MGP_C57BL6NJ_P0035107 Efcab10 protein_coding protein_coding MGP_C57BL6NJ_T0010026.1 MGP_C57BL6NJ_G0008111.1 mouse_genomes_project 12 115186293 115186373 + Mir1906-2 miRNA miRNA MGP_C57BL6NJ_T0013130.1 MGP_C57BL6NJ_G0011175.1 mouse_genomes_project 12 84246759 84247071 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035039.1 MGP_C57BL6NJ_G0020047.1 mouse_genomes_project 12 29904791 29910620 + MGP_C57BL6NJ_P0035039 Fam110c protein_coding protein_coding MGP_C57BL6NJ_T0035680.1 MGP_C57BL6NJ_G0020290.1 mouse_genomes_project 12 84269685 84274635 - MGP_C57BL6NJ_P0035680 protein_coding protein_coding MGP_C57BL6NJ_T0035237.1 MGP_C57BL6NJ_G0020121.1 mouse_genomes_project 12 53134998 53608819 + MGP_C57BL6NJ_P0035237 Akap6 protein_coding protein_coding MGP_C57BL6NJ_T0034968.1 MGP_C57BL6NJ_G0020019.1 mouse_genomes_project 12 22845701 22846151 - MGP_C57BL6NJ_P0034968 Gm16372 protein_coding protein_coding MGP_C57BL6NJ_T0035620.1 MGP_C57BL6NJ_G0020265.1 mouse_genomes_project 12 81592920 81600401 - protein_coding processed_transcript MGP_C57BL6NJ_T0035621.1 MGP_C57BL6NJ_G0020265.1 mouse_genomes_project 12 81597395 81629448 - protein_coding processed_transcript MGP_C57BL6NJ_T0036077.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103396217 103469569 + MGP_C57BL6NJ_P0036077 Ttc8 protein_coding protein_coding MGP_C57BL6NJ_T0036078.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103396255 103469575 + MGP_C57BL6NJ_P0036078 Ttc8 protein_coding protein_coding MGP_C57BL6NJ_T0036079.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103396463 103445576 + MGP_C57BL6NJ_P0036079 Ttc8 protein_coding protein_coding MGP_C57BL6NJ_T0036080.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103425265 103456625 + Ttc8 protein_coding processed_transcript MGP_C57BL6NJ_T0036081.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103460071 103468929 + Ttc8 protein_coding processed_transcript MGP_C57BL6NJ_T0036082.1 MGP_C57BL6NJ_G0020400.1 mouse_genomes_project 12 103460100 103465485 + Ttc8 protein_coding processed_transcript MGP_C57BL6NJ_T0034991.1 MGP_C57BL6NJ_G0020026.1 mouse_genomes_project 12 23382408 23472431 + MGP_C57BL6NJ_P0034991 Kidins220 protein_coding protein_coding MGP_C57BL6NJ_T0034992.1 MGP_C57BL6NJ_G0020026.1 mouse_genomes_project 12 23382409 23470575 + MGP_C57BL6NJ_P0034992 Kidins220 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099841.1 MGP_C57BL6NJ_G0037887.1 mouse_genomes_project 12 71504150 71504256 - Gm24449 snRNA snRNA MGP_C57BL6NJ_T0035040.1 MGP_C57BL6NJ_G0020048.1 mouse_genomes_project 12 30016945 30017500 + MGP_C57BL6NJ_P0035040 6030469F06Rik protein_coding protein_coding MGP_C57BL6NJ_T0036241.1 MGP_C57BL6NJ_G0020452.1 mouse_genomes_project 12 109096518 109112179 - MGP_C57BL6NJ_P0036241 Serpina12 protein_coding protein_coding MGP_C57BL6NJ_T0102787.1 MGP_C57BL6NJ_G0040581.1 mouse_genomes_project 12 122469308 122469942 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0035305.1 MGP_C57BL6NJ_G0020152.1 mouse_genomes_project 12 58406051 58411534 - MGP_C57BL6NJ_P0035305 Foxa1 protein_coding protein_coding MGP_C57BL6NJ_T0036228.1 MGP_C57BL6NJ_G0020447.1 mouse_genomes_project 12 108635706 108643038 - MGP_C57BL6NJ_P0036228 Serpina16 protein_coding protein_coding MGP_C57BL6NJ_T0036229.1 MGP_C57BL6NJ_G0020447.1 mouse_genomes_project 12 108635795 108642363 - MGP_C57BL6NJ_P0036229 Serpina16 protein_coding protein_coding MGP_C57BL6NJ_T0006615.1 MGP_C57BL6NJ_G0005508.1 mouse_genomes_project 12 105603153 105611287 + A630072L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0102780.1 MGP_C57BL6NJ_G0040574.1 mouse_genomes_project 12 108887867 108900415 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000358.1 MGP_C57BL6NJ_G0000277.1 mouse_genomes_project 12 120863033 120863332 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036520.1 MGP_C57BL6NJ_G0020554.1 mouse_genomes_project 12 119035066 119037029 + MGP_C57BL6NJ_P0036520 9230104M06Rik protein_coding protein_coding MGP_C57BL6NJ_T0011596.1 MGP_C57BL6NJ_G0009681.1 mouse_genomes_project 12 100476718 100477015 - Gm26480 misc_RNA misc_RNA MGP_C57BL6NJ_T0010068.1 MGP_C57BL6NJ_G0008153.1 mouse_genomes_project 12 115378002 115378122 - Gm25252 miRNA miRNA MGP_C57BL6NJ_T0010031.1 MGP_C57BL6NJ_G0008116.1 mouse_genomes_project 12 115233996 115234057 - Mir3544 miRNA miRNA MGP_C57BL6NJ_T0036006.1 MGP_C57BL6NJ_G0020384.1 mouse_genomes_project 12 92004525 92116758 + MGP_C57BL6NJ_P0036006 Adck1 protein_coding protein_coding MGP_C57BL6NJ_T0036007.1 MGP_C57BL6NJ_G0020384.1 mouse_genomes_project 12 92004772 92116757 + MGP_C57BL6NJ_P0036007 Adck1 protein_coding protein_coding MGP_C57BL6NJ_T0099827.1 MGP_C57BL6NJ_G0037873.1 mouse_genomes_project 12 55288014 55288178 + Gm22513 snRNA snRNA MGP_C57BL6NJ_T0010033.1 MGP_C57BL6NJ_G0008118.1 mouse_genomes_project 12 115234497 115234591 + Mir665 miRNA miRNA MGP_C57BL6NJ_T0010104.1 MGP_C57BL6NJ_G0008189.1 mouse_genomes_project 12 122209426 122209501 - Mir6388 miRNA miRNA MGP_C57BL6NJ_T0098975.1 MGP_C57BL6NJ_G0037039.1 mouse_genomes_project 12 9648807 9648938 + Gm26171 rRNA rRNA MGP_C57BL6NJ_T0000156.1 MGP_C57BL6NJ_G0000116.1 mouse_genomes_project 12 121589230 121589690 - MGP_C57BL6NJ_P0000156 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011587.1 MGP_C57BL6NJ_G0009672.1 mouse_genomes_project 12 71014820 71015120 + Rn7s1 misc_RNA misc_RNA MGP_C57BL6NJ_T0036176.1 MGP_C57BL6NJ_G0020431.1 mouse_genomes_project 12 107655133 107676430 + MGP_C57BL6NJ_P0036176 Ubr7 protein_coding protein_coding MGP_C57BL6NJ_T0035144.1 MGP_C57BL6NJ_G0020088.1 mouse_genomes_project 12 37230062 38090171 + MGP_C57BL6NJ_P0035144 Dgkb protein_coding protein_coding MGP_C57BL6NJ_T0035145.1 MGP_C57BL6NJ_G0020088.1 mouse_genomes_project 12 37346582 38087451 + MGP_C57BL6NJ_P0035145 Dgkb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006669.1 MGP_C57BL6NJ_G0005538.1 mouse_genomes_project 12 118981632 118985782 - Gm26583 lincRNA lincRNA MGP_C57BL6NJ_T0035519.1 MGP_C57BL6NJ_G0020226.1 mouse_genomes_project 12 75460202 75531671 + MGP_C57BL6NJ_P0035519 Slc38a6 protein_coding protein_coding MGP_C57BL6NJ_T0035520.1 MGP_C57BL6NJ_G0020226.1 mouse_genomes_project 12 75460213 75493774 + MGP_C57BL6NJ_P0035520 Slc38a6 protein_coding protein_coding MGP_C57BL6NJ_T0035521.1 MGP_C57BL6NJ_G0020226.1 mouse_genomes_project 12 75460331 75493763 + MGP_C57BL6NJ_P0035521 Slc38a6 protein_coding protein_coding MGP_C57BL6NJ_T0035522.1 MGP_C57BL6NJ_G0020226.1 mouse_genomes_project 12 75493386 75514568 + Slc38a6 protein_coding retained_intron MGP_C57BL6NJ_T0035523.1 MGP_C57BL6NJ_G0020226.1 mouse_genomes_project 12 75519141 75528223 + Slc38a6 protein_coding retained_intron MGP_C57BL6NJ_T0099832.1 MGP_C57BL6NJ_G0037878.1 mouse_genomes_project 12 55613289 55613395 + Gm24296 snRNA snRNA MGP_C57BL6NJ_T0036552.1 MGP_C57BL6NJ_G0020563.1 mouse_genomes_project 12 119645346 119647893 + MGP_C57BL6NJ_P0036552 protein_coding protein_coding MGP_C57BL6NJ_T0013102.1 MGP_C57BL6NJ_G0011147.1 mouse_genomes_project 12 19866318 19867061 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035311.1 MGP_C57BL6NJ_G0020155.1 mouse_genomes_project 12 59160829 59165368 - MGP_C57BL6NJ_P0035311 Clec14a protein_coding protein_coding MGP_C57BL6NJ_T0034808.1 MGP_C57BL6NJ_G0019959.1 mouse_genomes_project 12 1519758 1519860 - MGP_C57BL6NJ_P0034808 Gm3625 protein_coding protein_coding MGP_C57BL6NJ_T0000134.1 MGP_C57BL6NJ_G0000104.1 mouse_genomes_project 12 120879248 120879683 - MGP_C57BL6NJ_P0000134 Ighv15-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000135.1 MGP_C57BL6NJ_G0000104.1 mouse_genomes_project 12 120879248 120879683 - MGP_C57BL6NJ_P0000135 Ighv15-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000995.1 MGP_C57BL6NJ_G0000905.1 mouse_genomes_project 12 88330910 88332480 - TEC TEC MGP_C57BL6NJ_T0009990.1 MGP_C57BL6NJ_G0008075.1 mouse_genomes_project 12 41972207 41972305 + Gm25248 miRNA miRNA MGP_C57BL6NJ_T0036409.1 MGP_C57BL6NJ_G0020513.1 mouse_genomes_project 12 117050960 117078143 - MGP_C57BL6NJ_P0036409 4930595D18Rik protein_coding protein_coding MGP_C57BL6NJ_T0034942.1 MGP_C57BL6NJ_G0020011.1 mouse_genomes_project 12 15501933 15510970 + MGP_C57BL6NJ_P0034942 Odc1 protein_coding protein_coding MGP_C57BL6NJ_T0034943.1 MGP_C57BL6NJ_G0020011.1 mouse_genomes_project 12 15504359 15510978 + MGP_C57BL6NJ_P0034943 Odc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035537.1 MGP_C57BL6NJ_G0020235.1 mouse_genomes_project 12 77676161 77770374 + MGP_C57BL6NJ_P0035537 Rhoj protein_coding protein_coding MGP_C57BL6NJ_T0035538.1 MGP_C57BL6NJ_G0020235.1 mouse_genomes_project 12 77676161 77773874 + MGP_C57BL6NJ_P0035538 Rhoj protein_coding protein_coding MGP_C57BL6NJ_T0035539.1 MGP_C57BL6NJ_G0020235.1 mouse_genomes_project 12 77676161 77768235 + MGP_C57BL6NJ_P0035539 Rhoj protein_coding protein_coding MGP_C57BL6NJ_T0035540.1 MGP_C57BL6NJ_G0020235.1 mouse_genomes_project 12 77676512 77748137 + Rhoj protein_coding retained_intron MGP_C57BL6NJ_T0035541.1 MGP_C57BL6NJ_G0020235.1 mouse_genomes_project 12 77676720 77772630 + MGP_C57BL6NJ_P0035541 Rhoj protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0006611.1 MGP_C57BL6NJ_G0005504.1 mouse_genomes_project 12 103693349 103694756 + Gm28933 lincRNA lincRNA MGP_C57BL6NJ_T0000170.1 MGP_C57BL6NJ_G0000128.1 mouse_genomes_project 12 122017888 122018331 - MGP_C57BL6NJ_P0000170 Ighv8-11 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035760.1 MGP_C57BL6NJ_G0020306.1 mouse_genomes_project 12 86832422 86861047 + MGP_C57BL6NJ_P0035760 Papln protein_coding protein_coding MGP_C57BL6NJ_T0035761.1 MGP_C57BL6NJ_G0020306.1 mouse_genomes_project 12 86832442 86861020 + MGP_C57BL6NJ_P0035761 Papln protein_coding protein_coding MGP_C57BL6NJ_T0035762.1 MGP_C57BL6NJ_G0020306.1 mouse_genomes_project 12 86832450 86849797 + Papln protein_coding retained_intron MGP_C57BL6NJ_T0034841.1 MGP_C57BL6NJ_G0019977.1 mouse_genomes_project 12 5732323 5746584 - MGP_C57BL6NJ_P0034841 Slc7a15 protein_coding protein_coding MGP_C57BL6NJ_T0034842.1 MGP_C57BL6NJ_G0019977.1 mouse_genomes_project 12 5745239 5746605 - Slc7a15 protein_coding processed_transcript MGP_C57BL6NJ_T0035218.1 MGP_C57BL6NJ_G0020112.1 mouse_genomes_project 12 51960725 51973150 + MGP_C57BL6NJ_P0035218 Coch protein_coding protein_coding MGP_C57BL6NJ_T0035219.1 MGP_C57BL6NJ_G0020112.1 mouse_genomes_project 12 51960725 51973150 + MGP_C57BL6NJ_P0035219 Coch protein_coding protein_coding MGP_C57BL6NJ_T0006636.1 MGP_C57BL6NJ_G0005524.1 mouse_genomes_project 12 113161075 113202535 - Gm15208 lincRNA lincRNA MGP_C57BL6NJ_T0013174.1 MGP_C57BL6NJ_G0011219.1 mouse_genomes_project 12 126847412 126847854 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010043.1 MGP_C57BL6NJ_G0008128.1 mouse_genomes_project 12 115259756 115259852 + Mir341 miRNA miRNA MGP_C57BL6NJ_T0035111.1 MGP_C57BL6NJ_G0020070.1 mouse_genomes_project 12 33160343 33394776 - MGP_C57BL6NJ_P0035111 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035112.1 MGP_C57BL6NJ_G0020070.1 mouse_genomes_project 12 33362368 33364156 - MGP_C57BL6NJ_P0035112 protein_coding protein_coding MGP_C57BL6NJ_T0000390.1 MGP_C57BL6NJ_G0000309.1 mouse_genomes_project 12 122458585 122458864 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036408.1 MGP_C57BL6NJ_G0020512.1 mouse_genomes_project 12 116923291 117000134 + MGP_C57BL6NJ_P0036408 Rcor1 protein_coding protein_coding MGP_C57BL6NJ_T0035997.1 MGP_C57BL6NJ_G0020377.1 mouse_genomes_project 12 90897909 90903918 + MGP_C57BL6NJ_P0035997 Slirp protein_coding protein_coding MGP_C57BL6NJ_T0035998.1 MGP_C57BL6NJ_G0020377.1 mouse_genomes_project 12 90897927 90903922 + MGP_C57BL6NJ_P0035998 Slirp protein_coding protein_coding MGP_C57BL6NJ_T0035999.1 MGP_C57BL6NJ_G0020377.1 mouse_genomes_project 12 90897933 90903902 + MGP_C57BL6NJ_P0035999 Slirp protein_coding protein_coding MGP_C57BL6NJ_T0000993.1 MGP_C57BL6NJ_G0000903.1 mouse_genomes_project 12 86119655 86120457 - TEC TEC MGP_C57BL6NJ_T0006621.1 MGP_C57BL6NJ_G0005513.1 mouse_genomes_project 12 111625706 111629148 + Gm17032 lincRNA lincRNA MGP_C57BL6NJ_T0006570.1 MGP_C57BL6NJ_G0005471.1 mouse_genomes_project 12 29276543 29280774 - Gm28806 lincRNA lincRNA MGP_C57BL6NJ_T0000006.1 MGP_C57BL6NJ_G0000004.1 mouse_genomes_project 12 119320465 119322487 - MGP_C57BL6NJ_P0000006 Ighe IG_C_gene IG_C_gene MGP_C57BL6NJ_T0003567.1 MGP_C57BL6NJ_G0003262.1 mouse_genomes_project 12 95557013 95566498 + Gm16876 antisense antisense MGP_C57BL6NJ_T0010067.1 MGP_C57BL6NJ_G0008152.1 mouse_genomes_project 12 115377704 115377786 + Mir376b miRNA miRNA MGP_C57BL6NJ_T0000348.1 MGP_C57BL6NJ_G0000267.1 mouse_genomes_project 12 120364003 120364455 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000102.1 MGP_C57BL6NJ_G0000081.1 mouse_genomes_project 12 120379264 120379695 - MGP_C57BL6NJ_P0000102 Ighv9-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035606.1 MGP_C57BL6NJ_G0020256.1 mouse_genomes_project 12 79432062 79457338 - MGP_C57BL6NJ_P0035606 Max protein_coding protein_coding MGP_C57BL6NJ_T0035607.1 MGP_C57BL6NJ_G0020256.1 mouse_genomes_project 12 79432062 79457338 - MGP_C57BL6NJ_P0035607 Max protein_coding protein_coding MGP_C57BL6NJ_T0006639.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115182256 115219838 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006640.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115182258 115207306 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006641.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115183388 115209799 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006643.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115186250 115206437 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006644.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115188707 115219843 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006645.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115189700 115219836 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006646.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115189754 115219839 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0006647.1 MGP_C57BL6NJ_G0005527.1 mouse_genomes_project 12 115196877 115197398 + Meg3 lincRNA lincRNA MGP_C57BL6NJ_T0010091.1 MGP_C57BL6NJ_G0008176.1 mouse_genomes_project 12 115403521 115403604 + Mir3072 miRNA miRNA MGP_C57BL6NJ_T0099853.1 MGP_C57BL6NJ_G0037899.1 mouse_genomes_project 12 99544411 99544518 - Gm26055 snRNA snRNA MGP_C57BL6NJ_T0013161.1 MGP_C57BL6NJ_G0011206.1 mouse_genomes_project 12 119445847 119446204 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035528.1 MGP_C57BL6NJ_G0020230.1 mouse_genomes_project 12 76126793 76151966 + MGP_C57BL6NJ_P0035528 Hif1a protein_coding protein_coding MGP_C57BL6NJ_T0035529.1 MGP_C57BL6NJ_G0020230.1 mouse_genomes_project 12 76127179 76167943 + MGP_C57BL6NJ_P0035529 Hif1a protein_coding protein_coding MGP_C57BL6NJ_T0035530.1 MGP_C57BL6NJ_G0020230.1 mouse_genomes_project 12 76145491 76147422 + Hif1a protein_coding retained_intron MGP_C57BL6NJ_T0035531.1 MGP_C57BL6NJ_G0020230.1 mouse_genomes_project 12 76156559 76158771 + Hif1a protein_coding processed_transcript MGP_C57BL6NJ_T0036370.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116354447 116426264 + MGP_C57BL6NJ_P0036370 Dync1h1 protein_coding protein_coding MGP_C57BL6NJ_T0036371.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116354600 116426247 + MGP_C57BL6NJ_P0036371 Dync1h1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036372.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116396939 116397952 + Dync1h1 protein_coding retained_intron MGP_C57BL6NJ_T0036373.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116412140 116416144 + MGP_C57BL6NJ_P0036373 Dync1h1 protein_coding protein_coding MGP_C57BL6NJ_T0036374.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116414381 116415320 + Dync1h1 protein_coding retained_intron MGP_C57BL6NJ_T0036375.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116417068 116417779 + Dync1h1 protein_coding retained_intron MGP_C57BL6NJ_T0036376.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116420252 116420820 + Dync1h1 protein_coding retained_intron MGP_C57BL6NJ_T0036377.1 MGP_C57BL6NJ_G0020503.1 mouse_genomes_project 12 116422507 116424193 + Dync1h1 protein_coding retained_intron MGP_C57BL6NJ_T0006561.1 MGP_C57BL6NJ_G0005465.1 mouse_genomes_project 12 10501263 10505772 + 4930519A11Rik lincRNA lincRNA MGP_C57BL6NJ_T0000081.1 MGP_C57BL6NJ_G0000065.1 mouse_genomes_project 12 120011801 120012285 - MGP_C57BL6NJ_P0000081 Ighv5-15 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000082.1 MGP_C57BL6NJ_G0000065.1 mouse_genomes_project 12 120011801 120012277 - MGP_C57BL6NJ_P0000082 Ighv5-15 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0098993.1 MGP_C57BL6NJ_G0037057.1 mouse_genomes_project 12 126764773 126764891 - Gm25675 rRNA rRNA MGP_C57BL6NJ_T0035236.1 MGP_C57BL6NJ_G0020120.1 mouse_genomes_project 12 52931376 52995900 + MGP_C57BL6NJ_P0035236 Arhgap5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0017799.1 MGP_C57BL6NJ_G0015635.1 mouse_genomes_project 12 117680482 117681218 + Gm15995 processed_transcript processed_transcript MGP_C57BL6NJ_T0000085.1 MGP_C57BL6NJ_G0000067.1 mouse_genomes_project 12 120055887 120056409 - MGP_C57BL6NJ_P0000085 Ighv5-17 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010018.1 MGP_C57BL6NJ_G0008103.1 mouse_genomes_project 12 106357972 106358082 + Gm24542 miRNA miRNA MGP_C57BL6NJ_T0000394.1 MGP_C57BL6NJ_G0000313.1 mouse_genomes_project 12 122615943 122616378 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035542.1 MGP_C57BL6NJ_G0020236.1 mouse_genomes_project 12 77789580 77794642 - MGP_C57BL6NJ_P0035542 Gphb5 protein_coding protein_coding MGP_C57BL6NJ_T0098984.1 MGP_C57BL6NJ_G0037048.1 mouse_genomes_project 12 69228130 69228249 - n-R5s60 rRNA rRNA MGP_C57BL6NJ_T0000093.1 MGP_C57BL6NJ_G0000074.1 mouse_genomes_project 12 120190495 120190925 - MGP_C57BL6NJ_P0000093 Ighv14-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000374.1 MGP_C57BL6NJ_G0000293.1 mouse_genomes_project 12 121327794 121328228 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000061.1 MGP_C57BL6NJ_G0000049.1 mouse_genomes_project 12 120935960 120936254 + MGP_C57BL6NJ_P0000061 Ighv1-13 IG_LV_gene IG_LV_gene MGP_C57BL6NJ_T0036160.1 MGP_C57BL6NJ_G0020422.1 mouse_genomes_project 12 107275505 107303789 - MGP_C57BL6NJ_P0036160 Lgmn protein_coding protein_coding MGP_C57BL6NJ_T0036161.1 MGP_C57BL6NJ_G0020422.1 mouse_genomes_project 12 107275519 107321965 - MGP_C57BL6NJ_P0036161 Lgmn protein_coding protein_coding MGP_C57BL6NJ_T0036130.1 MGP_C57BL6NJ_G0020413.1 mouse_genomes_project 12 105704871 105749141 - MGP_C57BL6NJ_P0036130 Smek1 protein_coding protein_coding MGP_C57BL6NJ_T0036131.1 MGP_C57BL6NJ_G0020413.1 mouse_genomes_project 12 105704871 105749141 - MGP_C57BL6NJ_P0036131 Smek1 protein_coding protein_coding MGP_C57BL6NJ_T0098991.1 MGP_C57BL6NJ_G0037055.1 mouse_genomes_project 12 110839557 110839686 + Gm22790 rRNA rRNA MGP_C57BL6NJ_T0035792.1 MGP_C57BL6NJ_G0020317.1 mouse_genomes_project 12 87272063 87274422 - MGP_C57BL6NJ_P0035792 Pnma1 protein_coding protein_coding MGP_C57BL6NJ_T0011592.1 MGP_C57BL6NJ_G0009677.1 mouse_genomes_project 12 79163341 79163623 + Gm24010 misc_RNA misc_RNA MGP_C57BL6NJ_T0036106.1 MGP_C57BL6NJ_G0020407.1 mouse_genomes_project 12 104806233 104816595 + MGP_C57BL6NJ_P0036106 Calm1 protein_coding protein_coding MGP_C57BL6NJ_T0036107.1 MGP_C57BL6NJ_G0020407.1 mouse_genomes_project 12 104806327 104810736 + Calm1 protein_coding retained_intron MGP_C57BL6NJ_T0036108.1 MGP_C57BL6NJ_G0020407.1 mouse_genomes_project 12 104806942 104816595 + MGP_C57BL6NJ_P0036108 Calm1 protein_coding protein_coding MGP_C57BL6NJ_T0036109.1 MGP_C57BL6NJ_G0020407.1 mouse_genomes_project 12 104812201 104813294 + Calm1 protein_coding retained_intron MGP_C57BL6NJ_T0035963.1 MGP_C57BL6NJ_G0020366.1 mouse_genomes_project 12 90522247 90527736 - MGP_C57BL6NJ_P0035963 Ngb protein_coding protein_coding MGP_C57BL6NJ_T0035964.1 MGP_C57BL6NJ_G0020366.1 mouse_genomes_project 12 90522247 90527719 - MGP_C57BL6NJ_P0035964 Ngb protein_coding protein_coding MGP_C57BL6NJ_T0035965.1 MGP_C57BL6NJ_G0020366.1 mouse_genomes_project 12 90522741 90527547 - MGP_C57BL6NJ_P0035965 Ngb protein_coding protein_coding MGP_C57BL6NJ_T0099334.1 MGP_C57BL6NJ_G0037395.1 mouse_genomes_project 12 57358649 57362587 + C87198 sense_intronic sense_intronic MGP_C57BL6NJ_T0099335.1 MGP_C57BL6NJ_G0037395.1 mouse_genomes_project 12 57358659 57362123 + C87198 sense_intronic sense_intronic MGP_C57BL6NJ_T0013145.1 MGP_C57BL6NJ_G0011190.1 mouse_genomes_project 12 106471032 106471379 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011584.1 MGP_C57BL6NJ_G0009669.1 mouse_genomes_project 12 46802026 46802275 - Gm25051 misc_RNA misc_RNA MGP_C57BL6NJ_T0035369.1 MGP_C57BL6NJ_G0020173.1 mouse_genomes_project 12 67900654 67901677 - MGP_C57BL6NJ_P0035369 Rpl10l protein_coding protein_coding MGP_C57BL6NJ_T0036266.1 MGP_C57BL6NJ_G0020470.1 mouse_genomes_project 12 110284018 110301269 + MGP_C57BL6NJ_P0036266 Tcl1b2 protein_coding protein_coding MGP_C57BL6NJ_T0036267.1 MGP_C57BL6NJ_G0020470.1 mouse_genomes_project 12 110287238 110330912 + MGP_C57BL6NJ_P0036267 Tcl1b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036268.1 MGP_C57BL6NJ_G0020470.1 mouse_genomes_project 12 110287252 110330914 + MGP_C57BL6NJ_P0036268 Tcl1b2 protein_coding protein_coding MGP_C57BL6NJ_T0035564.1 MGP_C57BL6NJ_G0020241.1 mouse_genomes_project 12 78554064 78614367 - MGP_C57BL6NJ_P0035564 Esr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035565.1 MGP_C57BL6NJ_G0020241.1 mouse_genomes_project 12 78554064 78614367 - MGP_C57BL6NJ_P0035565 Esr2 protein_coding protein_coding MGP_C57BL6NJ_T0035566.1 MGP_C57BL6NJ_G0020241.1 mouse_genomes_project 12 78554064 78603802 - MGP_C57BL6NJ_P0035566 Esr2 protein_coding protein_coding MGP_C57BL6NJ_T0035567.1 MGP_C57BL6NJ_G0020241.1 mouse_genomes_project 12 78554084 78614367 - MGP_C57BL6NJ_P0035567 Esr2 protein_coding protein_coding MGP_C57BL6NJ_T0034811.1 MGP_C57BL6NJ_G0019961.1 mouse_genomes_project 12 1618780 1619305 - MGP_C57BL6NJ_P0034811 Gm17541 protein_coding protein_coding MGP_C57BL6NJ_T0035698.1 MGP_C57BL6NJ_G0020293.1 mouse_genomes_project 12 84417611 84425778 - MGP_C57BL6NJ_P0035698 Adam21 protein_coding protein_coding MGP_C57BL6NJ_T0099852.1 MGP_C57BL6NJ_G0037898.1 mouse_genomes_project 12 97773442 97773603 + Gm23249 snRNA snRNA MGP_C57BL6NJ_T0035354.1 MGP_C57BL6NJ_G0020164.1 mouse_genomes_project 12 63968686 63969109 + MGP_C57BL6NJ_P0035354 Spanxn4 protein_coding protein_coding MGP_C57BL6NJ_T0036254.1 MGP_C57BL6NJ_G0020460.1 mouse_genomes_project 12 109439001 109447456 + MGP_C57BL6NJ_P0036254 Serpina3k protein_coding protein_coding MGP_C57BL6NJ_T0099812.1 MGP_C57BL6NJ_G0037858.1 mouse_genomes_project 12 7238564 7238668 - Gm22845 snRNA snRNA MGP_C57BL6NJ_T0035469.1 MGP_C57BL6NJ_G0020210.1 mouse_genomes_project 12 74153095 74154469 - MGP_C57BL6NJ_P0035469 Gpr135 protein_coding protein_coding MGP_C57BL6NJ_T0036177.1 MGP_C57BL6NJ_G0020432.1 mouse_genomes_project 12 107683384 107784938 - MGP_C57BL6NJ_P0036177 Btbd7 protein_coding protein_coding MGP_C57BL6NJ_T0006591.1 MGP_C57BL6NJ_G0005486.1 mouse_genomes_project 12 78859640 78860538 - 4930426I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0035507.1 MGP_C57BL6NJ_G0020221.1 mouse_genomes_project 12 75078097 75083105 + MGP_C57BL6NJ_P0035507 Six6 protein_coding protein_coding MGP_C57BL6NJ_T0006622.1 MGP_C57BL6NJ_G0005514.1 mouse_genomes_project 12 111757915 111765558 - 1700121N20Rik lincRNA lincRNA MGP_C57BL6NJ_T0006553.1 MGP_C57BL6NJ_G0005458.1 mouse_genomes_project 12 2374565 2423446 + 2810032G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006554.1 MGP_C57BL6NJ_G0005458.1 mouse_genomes_project 12 2418781 2423772 + 2810032G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0000090.1 MGP_C57BL6NJ_G0000071.1 mouse_genomes_project 12 120134573 120135003 - MGP_C57BL6NJ_P0000090 Ighv14-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036093.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104455005 104508633 + Tdp1 protein_coding retained_intron MGP_C57BL6NJ_T0036094.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104455022 104458176 + Tdp1 protein_coding processed_transcript MGP_C57BL6NJ_T0036095.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104455025 104527468 + MGP_C57BL6NJ_P0036095 Tdp1 protein_coding protein_coding MGP_C57BL6NJ_T0036096.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104456972 104461640 + MGP_C57BL6NJ_P0036096 Tdp1 protein_coding protein_coding MGP_C57BL6NJ_T0036097.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104461474 104527463 + MGP_C57BL6NJ_P0036097 Tdp1 protein_coding protein_coding MGP_C57BL6NJ_T0036098.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104481997 104482929 + Tdp1 protein_coding retained_intron MGP_C57BL6NJ_T0036099.1 MGP_C57BL6NJ_G0020403.1 mouse_genomes_project 12 104484355 104527468 + Tdp1 protein_coding retained_intron MGP_C57BL6NJ_T0013113.1 MGP_C57BL6NJ_G0011158.1 mouse_genomes_project 12 58107691 58108157 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098812.1 MGP_C57BL6NJ_G0036876.1 mouse_genomes_project 12 34102023 34103641 + pseudogene pseudogene MGP_C57BL6NJ_T0006670.1 MGP_C57BL6NJ_G0005539.1 mouse_genomes_project 12 121678172 121682951 + lincRNA lincRNA MGP_C57BL6NJ_T0035586.1 MGP_C57BL6NJ_G0020251.1 mouse_genomes_project 12 79051628 79185002 - MGP_C57BL6NJ_P0035586 Sptb protein_coding protein_coding MGP_C57BL6NJ_T0035587.1 MGP_C57BL6NJ_G0020251.1 mouse_genomes_project 12 79054371 79055227 - Sptb protein_coding retained_intron MGP_C57BL6NJ_T0035588.1 MGP_C57BL6NJ_G0020251.1 mouse_genomes_project 12 79067542 79184478 - MGP_C57BL6NJ_P0035588 Sptb protein_coding protein_coding MGP_C57BL6NJ_T0034895.1 MGP_C57BL6NJ_G0019997.1 mouse_genomes_project 12 10898296 11251437 + MGP_C57BL6NJ_P0034895 Nbas protein_coding protein_coding MGP_C57BL6NJ_T0035985.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90879837 90883435 - Alkbh1 protein_coding processed_transcript MGP_C57BL6NJ_T0035986.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90880166 90897837 - MGP_C57BL6NJ_P0035986 Alkbh1 protein_coding protein_coding MGP_C57BL6NJ_T0035987.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90882074 90897824 - MGP_C57BL6NJ_P0035987 Alkbh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035988.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90882074 90897826 - MGP_C57BL6NJ_P0035988 Alkbh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035989.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90882077 90897834 - MGP_C57BL6NJ_P0035989 Alkbh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035990.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90882807 90897826 - MGP_C57BL6NJ_P0035990 Alkbh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035991.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90883118 90892556 - MGP_C57BL6NJ_P0035991 Alkbh1 protein_coding protein_coding MGP_C57BL6NJ_T0035992.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90885427 90895723 - Alkbh1 protein_coding processed_transcript MGP_C57BL6NJ_T0035993.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90887243 90897831 - MGP_C57BL6NJ_P0035993 Alkbh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035994.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90887254 90897837 - Alkbh1 protein_coding retained_intron MGP_C57BL6NJ_T0035995.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90896680 90898015 - Alkbh1 protein_coding retained_intron MGP_C57BL6NJ_T0035996.1 MGP_C57BL6NJ_G0020376.1 mouse_genomes_project 12 90897508 90897916 - MGP_C57BL6NJ_P0035996 Alkbh1 protein_coding protein_coding MGP_C57BL6NJ_T0099830.1 MGP_C57BL6NJ_G0037876.1 mouse_genomes_project 12 55330134 55330298 + Gm26444 snRNA snRNA MGP_C57BL6NJ_T0035382.1 MGP_C57BL6NJ_G0020177.1 mouse_genomes_project 12 71037862 71039522 - MGP_C57BL6NJ_P0035382 Rpl36al protein_coding protein_coding MGP_C57BL6NJ_T0035383.1 MGP_C57BL6NJ_G0020177.1 mouse_genomes_project 12 71037869 71039549 - MGP_C57BL6NJ_P0035383 Rpl36al protein_coding protein_coding MGP_C57BL6NJ_T0035384.1 MGP_C57BL6NJ_G0020177.1 mouse_genomes_project 12 71037872 71039619 - MGP_C57BL6NJ_P0035384 Rpl36al protein_coding protein_coding MGP_C57BL6NJ_T0000037.1 MGP_C57BL6NJ_G0000029.1 mouse_genomes_project 12 119562934 119562957 - MGP_C57BL6NJ_P0000037 Ighd1-1 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0036379.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116459484 116463751 - MGP_C57BL6NJ_P0036379 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036380.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116459500 116462896 - MGP_C57BL6NJ_P0036380 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036381.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116460738 116461508 - protein_coding retained_intron MGP_C57BL6NJ_T0036382.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116461339 116463009 - protein_coding retained_intron MGP_C57BL6NJ_T0036383.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116461844 116469997 - MGP_C57BL6NJ_P0036383 protein_coding protein_coding MGP_C57BL6NJ_T0036384.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116462485 116463595 - MGP_C57BL6NJ_P0036384 protein_coding protein_coding MGP_C57BL6NJ_T0036385.1 MGP_C57BL6NJ_G0020505.1 mouse_genomes_project 12 116462501 116463288 - MGP_C57BL6NJ_P0036385 protein_coding protein_coding MGP_C57BL6NJ_T0003568.1 MGP_C57BL6NJ_G0003263.1 mouse_genomes_project 12 103852139 103875518 + 3300002A11Rik antisense antisense MGP_C57BL6NJ_T0003569.1 MGP_C57BL6NJ_G0003263.1 mouse_genomes_project 12 103859057 103875518 + 3300002A11Rik antisense antisense MGP_C57BL6NJ_T0010059.1 MGP_C57BL6NJ_G0008144.1 mouse_genomes_project 12 115369679 115369753 + Mir679 miRNA miRNA MGP_C57BL6NJ_T0034977.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030274 23049095 - MGP_C57BL6NJ_P0034977 Cys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034978.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030284 23049077 - MGP_C57BL6NJ_P0034978 Cys1 protein_coding protein_coding MGP_C57BL6NJ_T0034979.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030284 23049077 - MGP_C57BL6NJ_P0034979 Cys1 protein_coding protein_coding MGP_C57BL6NJ_T0034980.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030389 23048305 - MGP_C57BL6NJ_P0034980 Cys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034981.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030389 23048305 - MGP_C57BL6NJ_P0034981 Cys1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034982.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23030990 23047229 - Cys1 protein_coding processed_transcript MGP_C57BL6NJ_T0034983.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23031134 23048190 - MGP_C57BL6NJ_P0034983 Cys1 protein_coding protein_coding MGP_C57BL6NJ_T0034984.1 MGP_C57BL6NJ_G0020023.1 mouse_genomes_project 12 23032889 23048001 - MGP_C57BL6NJ_P0034984 Cys1 protein_coding protein_coding MGP_C57BL6NJ_T0101154.1 MGP_C57BL6NJ_G0039200.1 mouse_genomes_project 12 115334834 115334909 + Gm25856 snoRNA snoRNA MGP_C57BL6NJ_T0035957.1 MGP_C57BL6NJ_G0020364.1 mouse_genomes_project 12 90400910 90408257 - MGP_C57BL6NJ_P0035957 Zdhhc22 protein_coding protein_coding MGP_C57BL6NJ_T0010004.1 MGP_C57BL6NJ_G0008089.1 mouse_genomes_project 12 79002079 79002158 - Mir5135 miRNA miRNA MGP_C57BL6NJ_T0036283.1 MGP_C57BL6NJ_G0020478.1 mouse_genomes_project 12 110806401 110879410 - MGP_C57BL6NJ_P0036283 Atg2b protein_coding protein_coding MGP_C57BL6NJ_T0036284.1 MGP_C57BL6NJ_G0020478.1 mouse_genomes_project 12 110806406 110878999 - MGP_C57BL6NJ_P0036284 Atg2b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101124.1 MGP_C57BL6NJ_G0039170.1 mouse_genomes_project 12 80369559 80369689 - Gm24070 snoRNA snoRNA MGP_C57BL6NJ_T0034789.1 MGP_C57BL6NJ_G0019953.1 mouse_genomes_project 12 831983 912978 - MGP_C57BL6NJ_P0034789 Efr3b protein_coding protein_coding MGP_C57BL6NJ_T0035278.1 MGP_C57BL6NJ_G0020141.1 mouse_genomes_project 12 56249013 56250671 + MGP_C57BL6NJ_P0035278 Aldoart2 protein_coding protein_coding MGP_C57BL6NJ_T0000136.1 MGP_C57BL6NJ_G0000105.1 mouse_genomes_project 12 120899939 120900373 - MGP_C57BL6NJ_P0000136 Ighv1-9 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000137.1 MGP_C57BL6NJ_G0000105.1 mouse_genomes_project 12 120899939 120900373 - MGP_C57BL6NJ_P0000137 Ighv1-9 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035470.1 MGP_C57BL6NJ_G0020211.1 mouse_genomes_project 12 74156905 74171272 - MGP_C57BL6NJ_P0035470 L3hypdh protein_coding protein_coding MGP_C57BL6NJ_T0035471.1 MGP_C57BL6NJ_G0020211.1 mouse_genomes_project 12 74159973 74171272 - L3hypdh protein_coding retained_intron MGP_C57BL6NJ_T0035472.1 MGP_C57BL6NJ_G0020211.1 mouse_genomes_project 12 74160741 74170851 - L3hypdh protein_coding processed_transcript MGP_C57BL6NJ_T0010089.1 MGP_C57BL6NJ_G0008174.1 mouse_genomes_project 12 115397758 115397837 + Mir369 miRNA miRNA MGP_C57BL6NJ_T0035208.1 MGP_C57BL6NJ_G0020106.1 mouse_genomes_project 12 49577603 49578164 + MGP_C57BL6NJ_P0035208 Gm9804 protein_coding protein_coding MGP_C57BL6NJ_T0003577.1 MGP_C57BL6NJ_G0003270.1 mouse_genomes_project 12 116424210 116424727 - Gm17111 antisense antisense MGP_C57BL6NJ_T0035980.1 MGP_C57BL6NJ_G0020375.1 mouse_genomes_project 12 90750779 90838783 - MGP_C57BL6NJ_P0035980 Sptlc2 protein_coding protein_coding MGP_C57BL6NJ_T0035981.1 MGP_C57BL6NJ_G0020375.1 mouse_genomes_project 12 90753791 90794533 - Sptlc2 protein_coding retained_intron MGP_C57BL6NJ_T0035982.1 MGP_C57BL6NJ_G0020375.1 mouse_genomes_project 12 90755360 90775944 - Sptlc2 protein_coding processed_transcript MGP_C57BL6NJ_T0035983.1 MGP_C57BL6NJ_G0020375.1 mouse_genomes_project 12 90797142 90801066 - Sptlc2 protein_coding retained_intron MGP_C57BL6NJ_T0035984.1 MGP_C57BL6NJ_G0020375.1 mouse_genomes_project 12 90797418 90838669 - Sptlc2 protein_coding processed_transcript MGP_C57BL6NJ_T0036205.1 MGP_C57BL6NJ_G0020439.1 mouse_genomes_project 12 108351962 108352961 - MGP_C57BL6NJ_P0036205 9330161L09Rik protein_coding protein_coding MGP_C57BL6NJ_T0035580.1 MGP_C57BL6NJ_G0020247.1 mouse_genomes_project 12 78861059 78863818 + MGP_C57BL6NJ_P0035580 Hspa2 protein_coding protein_coding MGP_C57BL6NJ_T0000106.1 MGP_C57BL6NJ_G0000084.1 mouse_genomes_project 12 120454378 120454674 - MGP_C57BL6NJ_P0000106 Ighv3-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000107.1 MGP_C57BL6NJ_G0000084.1 mouse_genomes_project 12 120454378 120454815 - MGP_C57BL6NJ_P0000107 Ighv3-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010085.1 MGP_C57BL6NJ_G0008170.1 mouse_genomes_project 12 115396749 115396839 + Mir541 miRNA miRNA MGP_C57BL6NJ_T0035322.1 MGP_C57BL6NJ_G0020160.1 mouse_genomes_project 12 60012181 60026887 + MGP_C57BL6NJ_P0035322 Mia2 protein_coding protein_coding MGP_C57BL6NJ_T0035840.1 MGP_C57BL6NJ_G0020330.1 mouse_genomes_project 12 87835282 87845715 + MGP_C57BL6NJ_P0035840 Vrtn protein_coding protein_coding MGP_C57BL6NJ_T0035841.1 MGP_C57BL6NJ_G0020330.1 mouse_genomes_project 12 87836818 87845715 + MGP_C57BL6NJ_P0035841 Vrtn protein_coding protein_coding MGP_C57BL6NJ_T0035842.1 MGP_C57BL6NJ_G0020330.1 mouse_genomes_project 12 87837159 87845715 + MGP_C57BL6NJ_P0035842 Vrtn protein_coding protein_coding MGP_C57BL6NJ_T0013166.1 MGP_C57BL6NJ_G0011211.1 mouse_genomes_project 12 121667009 121667378 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035976.1 MGP_C57BL6NJ_G0020373.1 mouse_genomes_project 12 90708842 90716094 + MGP_C57BL6NJ_P0035976 Ahsa1 protein_coding protein_coding MGP_C57BL6NJ_T0035495.1 MGP_C57BL6NJ_G0020217.1 mouse_genomes_project 12 74735209 74745045 - MGP_C57BL6NJ_P0035495 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0013123.1 MGP_C57BL6NJ_G0011168.1 mouse_genomes_project 12 73920284 73921253 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013139.1 MGP_C57BL6NJ_G0011184.1 mouse_genomes_project 12 95347063 95347853 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010023.1 MGP_C57BL6NJ_G0008108.1 mouse_genomes_project 12 114202285 114202384 + Mir342 miRNA miRNA MGP_C57BL6NJ_T0035361.1 MGP_C57BL6NJ_G0020170.1 mouse_genomes_project 12 66579014 66595045 - MGP_C57BL6NJ_P0035361 Fkbp3 protein_coding protein_coding MGP_C57BL6NJ_T0010076.1 MGP_C57BL6NJ_G0008161.1 mouse_genomes_project 12 115383629 115383707 + Mir544 miRNA miRNA MGP_C57BL6NJ_T0035707.1 MGP_C57BL6NJ_G0020298.1 mouse_genomes_project 12 85112535 85404461 + MGP_C57BL6NJ_P0035707 Sipa1l1 protein_coding protein_coding MGP_C57BL6NJ_T0035708.1 MGP_C57BL6NJ_G0020298.1 mouse_genomes_project 12 85257857 85404461 + MGP_C57BL6NJ_P0035708 Sipa1l1 protein_coding protein_coding MGP_C57BL6NJ_T0036112.1 MGP_C57BL6NJ_G0020409.1 mouse_genomes_project 12 105180996 105379005 - MGP_C57BL6NJ_P0036112 Rps6ka5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036113.1 MGP_C57BL6NJ_G0020409.1 mouse_genomes_project 12 105182339 105379153 - MGP_C57BL6NJ_P0036113 Rps6ka5 protein_coding protein_coding MGP_C57BL6NJ_T0036410.1 MGP_C57BL6NJ_G0020514.1 mouse_genomes_project 12 117058868 117140145 + MGP_C57BL6NJ_P0036410 Traf3 protein_coding protein_coding MGP_C57BL6NJ_T0036411.1 MGP_C57BL6NJ_G0020514.1 mouse_genomes_project 12 117117493 117168173 + MGP_C57BL6NJ_P0036411 Traf3 protein_coding protein_coding MGP_C57BL6NJ_T0036412.1 MGP_C57BL6NJ_G0020514.1 mouse_genomes_project 12 117117493 117168169 + MGP_C57BL6NJ_P0036412 Traf3 protein_coding protein_coding MGP_C57BL6NJ_T0036413.1 MGP_C57BL6NJ_G0020514.1 mouse_genomes_project 12 117138629 117168178 + MGP_C57BL6NJ_P0036413 Traf3 protein_coding protein_coding MGP_C57BL6NJ_T0036414.1 MGP_C57BL6NJ_G0020514.1 mouse_genomes_project 12 117149501 117163585 + Traf3 protein_coding retained_intron MGP_C57BL6NJ_T0034924.1 MGP_C57BL6NJ_G0020006.1 mouse_genomes_project 12 14897896 14907849 - MGP_C57BL6NJ_P0034924 2410004P03Rik protein_coding protein_coding MGP_C57BL6NJ_T0034925.1 MGP_C57BL6NJ_G0020006.1 mouse_genomes_project 12 14900163 14907676 - MGP_C57BL6NJ_P0034925 2410004P03Rik protein_coding protein_coding MGP_C57BL6NJ_T0034926.1 MGP_C57BL6NJ_G0020006.1 mouse_genomes_project 12 14901713 14907625 - MGP_C57BL6NJ_P0034926 2410004P03Rik protein_coding protein_coding MGP_C57BL6NJ_T0000165.1 MGP_C57BL6NJ_G0000123.1 mouse_genomes_project 12 121882147 121882609 - MGP_C57BL6NJ_P0000165 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000370.1 MGP_C57BL6NJ_G0000289.1 mouse_genomes_project 12 121270490 121270918 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0099249.1 MGP_C57BL6NJ_G0037313.1 mouse_genomes_project 12 83116844 83116983 - Scarna3b scaRNA scaRNA MGP_C57BL6NJ_T0006607.1 MGP_C57BL6NJ_G0005500.1 mouse_genomes_project 12 90779814 90782843 + Gm26764 lincRNA lincRNA MGP_C57BL6NJ_T0000330.1 MGP_C57BL6NJ_G0000249.1 mouse_genomes_project 12 119721384 119721853 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034799.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1093411 1113851 - MGP_C57BL6NJ_P0034799 Cenpo protein_coding protein_coding MGP_C57BL6NJ_T0034800.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1095229 1131343 - MGP_C57BL6NJ_P0034800 Cenpo protein_coding protein_coding MGP_C57BL6NJ_T0034802.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1110786 1113811 - Cenpo protein_coding retained_intron MGP_C57BL6NJ_T0034803.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1111798 1131148 - MGP_C57BL6NJ_P0034803 Cenpo protein_coding protein_coding MGP_C57BL6NJ_T0034804.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1112662 1129381 - MGP_C57BL6NJ_P0034804 Cenpo protein_coding protein_coding MGP_C57BL6NJ_T0034805.1 MGP_C57BL6NJ_G0019956.1 mouse_genomes_project 12 1112996 1131316 - Cenpo protein_coding retained_intron MGP_C57BL6NJ_T0036581.1 MGP_C57BL6NJ_G0020574.1 mouse_genomes_project 12 125626554 125632792 + MGP_C57BL6NJ_P0036581 Sp8 protein_coding protein_coding MGP_C57BL6NJ_T0000346.1 MGP_C57BL6NJ_G0000265.1 mouse_genomes_project 12 120321285 120321580 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0099826.1 MGP_C57BL6NJ_G0037872.1 mouse_genomes_project 12 54758404 54758550 - Gm24692 snRNA snRNA MGP_C57BL6NJ_T0000378.1 MGP_C57BL6NJ_G0000297.1 mouse_genomes_project 12 121599593 122332539 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101103.1 MGP_C57BL6NJ_G0039149.1 mouse_genomes_project 12 35574001 35574111 - Gm25438 snoRNA snoRNA MGP_C57BL6NJ_T0000389.1 MGP_C57BL6NJ_G0000308.1 mouse_genomes_project 12 122400317 122400611 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0003535.1 MGP_C57BL6NJ_G0003234.1 mouse_genomes_project 12 596834 606412 - Dtnbos antisense antisense MGP_C57BL6NJ_T0101138.1 MGP_C57BL6NJ_G0039184.1 mouse_genomes_project 12 115285268 115285341 + AF357425 snoRNA snoRNA MGP_C57BL6NJ_T0036133.1 MGP_C57BL6NJ_G0020415.1 mouse_genomes_project 12 106470289 106551304 - MGP_C57BL6NJ_P0036133 Tc2n protein_coding protein_coding MGP_C57BL6NJ_T0036134.1 MGP_C57BL6NJ_G0020415.1 mouse_genomes_project 12 106471411 106544378 - MGP_C57BL6NJ_P0036134 Tc2n protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036135.1 MGP_C57BL6NJ_G0020415.1 mouse_genomes_project 12 106475395 106542009 - MGP_C57BL6NJ_P0036135 Tc2n protein_coding protein_coding MGP_C57BL6NJ_T0036136.1 MGP_C57BL6NJ_G0020415.1 mouse_genomes_project 12 106475442 106544046 - MGP_C57BL6NJ_P0036136 Tc2n protein_coding protein_coding MGP_C57BL6NJ_T0036259.1 MGP_C57BL6NJ_G0020464.1 mouse_genomes_project 12 109579948 109582943 + MGP_C57BL6NJ_P0036259 Gm1000 protein_coding protein_coding MGP_C57BL6NJ_T0013115.1 MGP_C57BL6NJ_G0011160.1 mouse_genomes_project 12 58498863 58499301 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098978.1 MGP_C57BL6NJ_G0037042.1 mouse_genomes_project 12 26696799 26696937 - Gm25923 rRNA rRNA MGP_C57BL6NJ_T0035594.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79278149 79303582 - MGP_C57BL6NJ_P0035594 Rab15 protein_coding protein_coding MGP_C57BL6NJ_T0035595.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79280068 79281029 - Rab15 protein_coding retained_intron MGP_C57BL6NJ_T0035596.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79280316 79285903 - MGP_C57BL6NJ_P0035596 Rab15 protein_coding protein_coding MGP_C57BL6NJ_T0035597.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79280524 79304173 - MGP_C57BL6NJ_P0035597 Rab15 protein_coding protein_coding MGP_C57BL6NJ_T0035598.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79280760 79300361 - MGP_C57BL6NJ_P0035598 Rab15 protein_coding protein_coding MGP_C57BL6NJ_T0035599.1 MGP_C57BL6NJ_G0020255.1 mouse_genomes_project 12 79283181 79303727 - Rab15 protein_coding retained_intron MGP_C57BL6NJ_T0036243.1 MGP_C57BL6NJ_G0020454.1 mouse_genomes_project 12 109184407 109193580 + MGP_C57BL6NJ_P0036243 Serpina3a protein_coding protein_coding MGP_C57BL6NJ_T0036244.1 MGP_C57BL6NJ_G0020454.1 mouse_genomes_project 12 109184463 109193492 + MGP_C57BL6NJ_P0036244 Serpina3a protein_coding protein_coding MGP_C57BL6NJ_T0036245.1 MGP_C57BL6NJ_G0020454.1 mouse_genomes_project 12 109187653 109193202 + MGP_C57BL6NJ_P0036245 Serpina3a protein_coding protein_coding MGP_C57BL6NJ_T0000122.1 MGP_C57BL6NJ_G0000094.1 mouse_genomes_project 12 120683503 120683991 - MGP_C57BL6NJ_P0000122 Ighv6-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000123.1 MGP_C57BL6NJ_G0000094.1 mouse_genomes_project 12 120683506 120683803 - MGP_C57BL6NJ_P0000123 Ighv6-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000013.1 MGP_C57BL6NJ_G0000008.1 mouse_genomes_project 12 119412672 119414330 - MGP_C57BL6NJ_P0000013 Ighg3 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0102778.1 MGP_C57BL6NJ_G0040572.1 mouse_genomes_project 12 108666369 108671355 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036493.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118681145 118701514 - MGP_C57BL6NJ_P0036493 Akt1 protein_coding protein_coding MGP_C57BL6NJ_T0036494.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118681997 118698874 - MGP_C57BL6NJ_P0036494 Akt1 protein_coding protein_coding MGP_C57BL6NJ_T0036495.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118683167 118684298 - Akt1 protein_coding retained_intron MGP_C57BL6NJ_T0036496.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118684418 118686962 - Akt1 protein_coding retained_intron MGP_C57BL6NJ_T0036497.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118684886 118686467 - Akt1 protein_coding retained_intron MGP_C57BL6NJ_T0036498.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118685749 118702122 - MGP_C57BL6NJ_P0036498 Akt1 protein_coding protein_coding MGP_C57BL6NJ_T0036499.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118686484 118701306 - MGP_C57BL6NJ_P0036499 Akt1 protein_coding protein_coding MGP_C57BL6NJ_T0036500.1 MGP_C57BL6NJ_G0020542.1 mouse_genomes_project 12 118686590 118695424 - Akt1 protein_coding processed_transcript MGP_C57BL6NJ_T0010050.1 MGP_C57BL6NJ_G0008135.1 mouse_genomes_project 12 115364740 115364803 + Mir299a miRNA miRNA MGP_C57BL6NJ_T0035210.1 MGP_C57BL6NJ_G0020108.1 mouse_genomes_project 12 51457089 51459978 - MGP_C57BL6NJ_P0035210 Tuba1c protein_coding protein_coding MGP_C57BL6NJ_T0036437.1 MGP_C57BL6NJ_G0020524.1 mouse_genomes_project 12 117622553 117628304 + MGP_C57BL6NJ_P0036437 Trmt61a protein_coding protein_coding MGP_C57BL6NJ_T0036438.1 MGP_C57BL6NJ_G0020524.1 mouse_genomes_project 12 117622553 117628304 + MGP_C57BL6NJ_P0036438 Trmt61a protein_coding protein_coding MGP_C57BL6NJ_T0009992.1 MGP_C57BL6NJ_G0008077.1 mouse_genomes_project 12 55235233 55235313 - Mir1892 miRNA miRNA MGP_C57BL6NJ_T0101108.1 MGP_C57BL6NJ_G0039154.1 mouse_genomes_project 12 44979805 44979936 + Gm24731 snoRNA snoRNA MGP_C57BL6NJ_T0035512.1 MGP_C57BL6NJ_G0020223.1 mouse_genomes_project 12 75252858 75266675 - MGP_C57BL6NJ_P0035512 Six4 protein_coding protein_coding MGP_C57BL6NJ_T0035513.1 MGP_C57BL6NJ_G0020223.1 mouse_genomes_project 12 75256690 75266706 - MGP_C57BL6NJ_P0035513 Six4 protein_coding protein_coding MGP_C57BL6NJ_T0000159.1 MGP_C57BL6NJ_G0000119.1 mouse_genomes_project 12 121678021 121678455 - MGP_C57BL6NJ_P0000159 Ighv1-56 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000160.1 MGP_C57BL6NJ_G0000119.1 mouse_genomes_project 12 121678225 121678315 - MGP_C57BL6NJ_P0000160 Ighv1-56 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0009997.1 MGP_C57BL6NJ_G0008082.1 mouse_genomes_project 12 71233045 71233125 - miRNA miRNA MGP_C57BL6NJ_T0000044.1 MGP_C57BL6NJ_G0000036.1 mouse_genomes_project 12 119481297 119481345 - MGP_C57BL6NJ_P0000044 Ighj2 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0000045.1 MGP_C57BL6NJ_G0000036.1 mouse_genomes_project 12 119481343 119481397 - Ighj2 IG_J_gene processed_transcript MGP_C57BL6NJ_T0009995.1 MGP_C57BL6NJ_G0008080.1 mouse_genomes_project 12 71014962 71015032 + miRNA miRNA MGP_C57BL6NJ_T0099859.1 MGP_C57BL6NJ_G0037905.1 mouse_genomes_project 12 122782589 122782696 + Gm23732 snRNA snRNA MGP_C57BL6NJ_T0036354.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115078996 115079992 + Dlk1 protein_coding retained_intron MGP_C57BL6NJ_T0036355.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079022 115089655 + MGP_C57BL6NJ_P0036355 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036356.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079664 115086961 + MGP_C57BL6NJ_P0036356 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036357.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079700 115086879 + MGP_C57BL6NJ_P0036357 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036358.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079700 115086642 + MGP_C57BL6NJ_P0036358 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036359.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079744 115089655 + MGP_C57BL6NJ_P0036359 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036360.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079864 115089655 + MGP_C57BL6NJ_P0036360 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036361.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115079869 115086621 + MGP_C57BL6NJ_P0036361 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036362.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115080404 115086023 + MGP_C57BL6NJ_P0036362 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0036363.1 MGP_C57BL6NJ_G0020499.1 mouse_genomes_project 12 115086103 115086736 + MGP_C57BL6NJ_P0036363 Dlk1 protein_coding protein_coding MGP_C57BL6NJ_T0010006.1 MGP_C57BL6NJ_G0008091.1 mouse_genomes_project 12 83116844 83116909 - Mir1843a miRNA miRNA MGP_C57BL6NJ_T0000329.1 MGP_C57BL6NJ_G0000248.1 mouse_genomes_project 12 119708710 119709157 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036322.1 MGP_C57BL6NJ_G0020489.1 mouse_genomes_project 12 113836409 113872834 + MGP_C57BL6NJ_P0036322 Cyp46a1 protein_coding protein_coding MGP_C57BL6NJ_T0010021.1 MGP_C57BL6NJ_G0008106.1 mouse_genomes_project 12 110152846 110152911 - Mir3069 miRNA miRNA MGP_C57BL6NJ_T0006617.1 MGP_C57BL6NJ_G0005510.1 mouse_genomes_project 12 107611489 107618666 - Gm21971 lincRNA lincRNA MGP_C57BL6NJ_T0000060.1 MGP_C57BL6NJ_G0000048.1 mouse_genomes_project 12 119771247 119771525 + MGP_C57BL6NJ_P0000060 Ighv5-8 IG_LV_gene IG_LV_gene MGP_C57BL6NJ_T0102784.1 MGP_C57BL6NJ_G0040578.1 mouse_genomes_project 12 109265038 109271031 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000151.1 MGP_C57BL6NJ_G0000113.1 mouse_genomes_project 12 121378298 121378732 - MGP_C57BL6NJ_P0000151 Ighv8-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000152.1 MGP_C57BL6NJ_G0000113.1 mouse_genomes_project 12 121378298 121378592 - MGP_C57BL6NJ_P0000152 Ighv8-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0013126.1 MGP_C57BL6NJ_G0011171.1 mouse_genomes_project 12 78583267 78583580 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006581.1 MGP_C57BL6NJ_G0005480.1 mouse_genomes_project 12 53028829 53031171 - 1700031P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006582.1 MGP_C57BL6NJ_G0005480.1 mouse_genomes_project 12 53030443 53031167 - 1700031P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006583.1 MGP_C57BL6NJ_G0005480.1 mouse_genomes_project 12 53030461 53031168 - 1700031P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0035379.1 MGP_C57BL6NJ_G0020175.1 mouse_genomes_project 12 71013247 71014712 - MGP_C57BL6NJ_P0035379 Rps29 protein_coding protein_coding MGP_C57BL6NJ_T0035380.1 MGP_C57BL6NJ_G0020175.1 mouse_genomes_project 12 71013883 71014580 - Rps29 protein_coding retained_intron MGP_C57BL6NJ_T0035525.1 MGP_C57BL6NJ_G0020228.1 mouse_genomes_project 12 75743226 75746508 - MGP_C57BL6NJ_P0035525 Tmem30b protein_coding protein_coding MGP_C57BL6NJ_T0000014.1 MGP_C57BL6NJ_G0000009.1 mouse_genomes_project 12 119456608 119466174 - MGP_C57BL6NJ_P0000014 Ighd IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000015.1 MGP_C57BL6NJ_G0000009.1 mouse_genomes_project 12 119459556 119466174 - MGP_C57BL6NJ_P0000015 Ighd IG_C_gene IG_C_gene MGP_C57BL6NJ_T0036548.1 MGP_C57BL6NJ_G0000009.1 mouse_genomes_project 12 119457539 119466154 - MGP_C57BL6NJ_P0036548 Ighd IG_C_gene unknown_likely_coding MGP_C57BL6NJ_T0036549.1 MGP_C57BL6NJ_G0000009.1 mouse_genomes_project 12 119457539 119466013 - MGP_C57BL6NJ_P0036549 Ighd IG_C_gene unknown_likely_coding MGP_C57BL6NJ_T0036480.1 MGP_C57BL6NJ_G0020534.1 mouse_genomes_project 12 118090255 118111146 + MGP_C57BL6NJ_P0036480 Aspg protein_coding protein_coding MGP_C57BL6NJ_T0035966.1 MGP_C57BL6NJ_G0020367.1 mouse_genomes_project 12 90532017 90573270 - MGP_C57BL6NJ_P0035966 Pomt2 protein_coding protein_coding MGP_C57BL6NJ_T0006602.1 MGP_C57BL6NJ_G0005495.1 mouse_genomes_project 12 87147843 87166797 - 4732463B04Rik lincRNA lincRNA MGP_C57BL6NJ_T0013138.1 MGP_C57BL6NJ_G0011183.1 mouse_genomes_project 12 91654778 91655212 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010044.1 MGP_C57BL6NJ_G0008129.1 mouse_genomes_project 12 115260078 115260198 + Mir1188 miRNA miRNA MGP_C57BL6NJ_T0010019.1 MGP_C57BL6NJ_G0008104.1 mouse_genomes_project 12 107574922 107575015 - Mir1936 miRNA miRNA MGP_C57BL6NJ_T0035437.1 MGP_C57BL6NJ_G0020199.1 mouse_genomes_project 12 72217498 72228125 - MGP_C57BL6NJ_P0035437 Trim9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035438.1 MGP_C57BL6NJ_G0020199.1 mouse_genomes_project 12 72217504 72321754 - MGP_C57BL6NJ_P0035438 Trim9 protein_coding protein_coding MGP_C57BL6NJ_T0035439.1 MGP_C57BL6NJ_G0020199.1 mouse_genomes_project 12 72217504 72321754 - MGP_C57BL6NJ_P0035439 Trim9 protein_coding protein_coding MGP_C57BL6NJ_T0035440.1 MGP_C57BL6NJ_G0020199.1 mouse_genomes_project 12 72236695 72321754 - MGP_C57BL6NJ_P0035440 Trim9 protein_coding protein_coding MGP_C57BL6NJ_T0013116.1 MGP_C57BL6NJ_G0011161.1 mouse_genomes_project 12 60009614 60010798 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036518.1 MGP_C57BL6NJ_G0020553.1 mouse_genomes_project 12 119011585 119014034 + MGP_C57BL6NJ_P0036518 Btbd6 protein_coding protein_coding MGP_C57BL6NJ_T0036519.1 MGP_C57BL6NJ_G0020553.1 mouse_genomes_project 12 119011666 119014034 + MGP_C57BL6NJ_P0036519 Btbd6 protein_coding protein_coding MGP_C57BL6NJ_T0035832.1 MGP_C57BL6NJ_G0020325.1 mouse_genomes_project 12 87578689 87580072 + MGP_C57BL6NJ_P0035832 Rnf113a2 protein_coding protein_coding MGP_C57BL6NJ_T0035830.1 MGP_C57BL6NJ_G0020324.1 mouse_genomes_project 12 87570699 87595243 + MGP_C57BL6NJ_P0035830 Bbof1 protein_coding protein_coding MGP_C57BL6NJ_T0035831.1 MGP_C57BL6NJ_G0020324.1 mouse_genomes_project 12 87574870 87589884 + MGP_C57BL6NJ_P0035831 Bbof1 protein_coding protein_coding MGP_C57BL6NJ_T0035833.1 MGP_C57BL6NJ_G0020324.1 mouse_genomes_project 12 87581467 87591843 + MGP_C57BL6NJ_P0035833 Bbof1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010016.1 MGP_C57BL6NJ_G0008101.1 mouse_genomes_project 12 104559912 104559990 - Gm23291 miRNA miRNA MGP_C57BL6NJ_T0036206.1 MGP_C57BL6NJ_G0020440.1 mouse_genomes_project 12 108353116 108370921 - MGP_C57BL6NJ_P0036206 Ddx24 protein_coding protein_coding MGP_C57BL6NJ_T0036207.1 MGP_C57BL6NJ_G0020440.1 mouse_genomes_project 12 108353116 108371008 - MGP_C57BL6NJ_P0036207 Ddx24 protein_coding protein_coding MGP_C57BL6NJ_T0035806.1 MGP_C57BL6NJ_G0020320.1 mouse_genomes_project 12 87454979 87487038 + MGP_C57BL6NJ_P0035806 Zfp410 protein_coding protein_coding MGP_C57BL6NJ_T0099845.1 MGP_C57BL6NJ_G0037891.1 mouse_genomes_project 12 79937287 79937386 + Gm24775 snRNA snRNA MGP_C57BL6NJ_T0000991.1 MGP_C57BL6NJ_G0000901.1 mouse_genomes_project 12 75089102 75089918 + TEC TEC MGP_C57BL6NJ_T0034945.1 MGP_C57BL6NJ_G0020013.1 mouse_genomes_project 12 19408582 19516323 + MGP_C57BL6NJ_P0034945 Asap2 protein_coding protein_coding MGP_C57BL6NJ_T0034946.1 MGP_C57BL6NJ_G0020013.1 mouse_genomes_project 12 19408582 19516323 + MGP_C57BL6NJ_P0034946 Asap2 protein_coding protein_coding MGP_C57BL6NJ_T0034947.1 MGP_C57BL6NJ_G0020013.1 mouse_genomes_project 12 19408582 19516323 + MGP_C57BL6NJ_P0034947 Asap2 protein_coding protein_coding MGP_C57BL6NJ_T0034948.1 MGP_C57BL6NJ_G0020013.1 mouse_genomes_project 12 19408582 19513511 + MGP_C57BL6NJ_P0034948 Asap2 protein_coding protein_coding MGP_C57BL6NJ_T0000138.1 MGP_C57BL6NJ_G0000106.1 mouse_genomes_project 12 120921903 120922336 - MGP_C57BL6NJ_P0000138 Ighv1-11 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0013146.1 MGP_C57BL6NJ_G0011191.1 mouse_genomes_project 12 106709189 106709536 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013121.1 MGP_C57BL6NJ_G0011166.1 mouse_genomes_project 12 64385715 64386012 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036164.1 MGP_C57BL6NJ_G0020424.1 mouse_genomes_project 12 107436651 107449020 + MGP_C57BL6NJ_P0036164 Chga protein_coding protein_coding MGP_C57BL6NJ_T0000110.1 MGP_C57BL6NJ_G0000086.1 mouse_genomes_project 12 120514938 120515373 - MGP_C57BL6NJ_P0000110 Ighv3-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0013101.1 MGP_C57BL6NJ_G0011146.1 mouse_genomes_project 12 16475175 16476146 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036253.1 MGP_C57BL6NJ_G0020459.1 mouse_genomes_project 12 109414866 109421039 + MGP_C57BL6NJ_P0036253 Serpina3j protein_coding protein_coding MGP_C57BL6NJ_T0035010.1 MGP_C57BL6NJ_G0020037.1 mouse_genomes_project 12 27385491 27447766 - MGP_C57BL6NJ_P0035010 Trappc12 protein_coding protein_coding MGP_C57BL6NJ_T0035011.1 MGP_C57BL6NJ_G0020037.1 mouse_genomes_project 12 27385491 27447707 - MGP_C57BL6NJ_P0035011 Trappc12 protein_coding protein_coding MGP_C57BL6NJ_T0035012.1 MGP_C57BL6NJ_G0020037.1 mouse_genomes_project 12 27404360 27447766 - MGP_C57BL6NJ_P0035012 Trappc12 protein_coding protein_coding MGP_C57BL6NJ_T0036338.1 MGP_C57BL6NJ_G0020494.1 mouse_genomes_project 12 114399097 114409108 - MGP_C57BL6NJ_P0036338 Slc25a29 protein_coding protein_coding MGP_C57BL6NJ_T0036339.1 MGP_C57BL6NJ_G0020494.1 mouse_genomes_project 12 114400448 114404842 - Slc25a29 protein_coding retained_intron MGP_C57BL6NJ_T0036340.1 MGP_C57BL6NJ_G0020494.1 mouse_genomes_project 12 114404168 114409045 - Slc25a29 protein_coding retained_intron MGP_C57BL6NJ_T0017769.1 MGP_C57BL6NJ_G0015626.1 mouse_genomes_project 12 84394339 84395663 - Gm17191 processed_transcript processed_transcript MGP_C57BL6NJ_T0035732.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86218491 86369819 - MGP_C57BL6NJ_P0035732 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0035733.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86218497 86523517 - MGP_C57BL6NJ_P0035733 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0035734.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86267992 86523509 - MGP_C57BL6NJ_P0035734 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0035735.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86270726 86306504 - MGP_C57BL6NJ_P0035735 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0035736.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86279431 86523509 - MGP_C57BL6NJ_P0035736 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0035737.1 MGP_C57BL6NJ_G0020301.1 mouse_genomes_project 12 86279548 86466475 - MGP_C57BL6NJ_P0035737 Dpf3 protein_coding protein_coding MGP_C57BL6NJ_T0000387.1 MGP_C57BL6NJ_G0000306.1 mouse_genomes_project 12 122325748 122326191 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035710.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85548004 86036281 + MGP_C57BL6NJ_P0035710 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035711.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85584434 86156169 + MGP_C57BL6NJ_P0035711 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035712.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85584723 86087440 + MGP_C57BL6NJ_P0035712 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035713.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85584743 86156438 + MGP_C57BL6NJ_P0035713 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035714.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85584836 86157010 + MGP_C57BL6NJ_P0035714 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035715.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585297 86157566 + MGP_C57BL6NJ_P0035715 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035716.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585297 86160254 + MGP_C57BL6NJ_P0035716 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035717.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585370 86156544 + MGP_C57BL6NJ_P0035717 Rgs6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035718.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585385 86056235 + MGP_C57BL6NJ_P0035718 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035719.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585433 86040059 + MGP_C57BL6NJ_P0035719 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035720.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585452 86156291 + MGP_C57BL6NJ_P0035720 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035721.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585647 86039997 + MGP_C57BL6NJ_P0035721 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035722.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85585823 85586791 + Rgs6 protein_coding retained_intron MGP_C57BL6NJ_T0035723.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86136010 + MGP_C57BL6NJ_P0035723 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035724.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86136010 + MGP_C57BL6NJ_P0035724 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035725.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86156169 + MGP_C57BL6NJ_P0035725 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035726.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86156169 + MGP_C57BL6NJ_P0035726 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035727.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86136133 + MGP_C57BL6NJ_P0035727 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035728.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 85615305 86132082 + MGP_C57BL6NJ_P0035728 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035729.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 86035678 86036809 + Rgs6 protein_coding retained_intron MGP_C57BL6NJ_T0035730.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 86105280 86156405 + MGP_C57BL6NJ_P0035730 Rgs6 protein_coding protein_coding MGP_C57BL6NJ_T0035731.1 MGP_C57BL6NJ_G0020300.1 mouse_genomes_project 12 86114565 86135961 + Rgs6 protein_coding retained_intron MGP_C57BL6NJ_T0036481.1 MGP_C57BL6NJ_G0020535.1 mouse_genomes_project 12 118133674 118169240 + MGP_C57BL6NJ_P0036481 Kif26a protein_coding protein_coding MGP_C57BL6NJ_T0036482.1 MGP_C57BL6NJ_G0020535.1 mouse_genomes_project 12 118166588 118168009 + Kif26a protein_coding processed_transcript MGP_C57BL6NJ_T0013100.1 MGP_C57BL6NJ_G0011145.1 mouse_genomes_project 12 13541468 13542467 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034997.1 MGP_C57BL6NJ_G0020030.1 mouse_genomes_project 12 25918493 25929686 - MGP_C57BL6NJ_P0034997 Sox11 protein_coding protein_coding MGP_C57BL6NJ_T0003532.1 MGP_C57BL6NJ_G0003233.1 mouse_genomes_project 12 208631 232864 - 1110002L01Rik antisense antisense MGP_C57BL6NJ_T0003533.1 MGP_C57BL6NJ_G0003233.1 mouse_genomes_project 12 212194 232600 - 1110002L01Rik antisense antisense MGP_C57BL6NJ_T0003534.1 MGP_C57BL6NJ_G0003233.1 mouse_genomes_project 12 212614 232567 - 1110002L01Rik antisense antisense MGP_C57BL6NJ_T0000384.1 MGP_C57BL6NJ_G0000303.1 mouse_genomes_project 12 121820733 121821027 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000167.1 MGP_C57BL6NJ_G0000125.1 mouse_genomes_project 12 121965574 121967661 - MGP_C57BL6NJ_P0000167 Ighv1-64 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010073.1 MGP_C57BL6NJ_G0008158.1 mouse_genomes_project 12 115382354 115382469 - Gm44322 miRNA miRNA MGP_C57BL6NJ_T0035844.1 MGP_C57BL6NJ_G0020332.1 mouse_genomes_project 12 87959570 87978121 - MGP_C57BL6NJ_P0035844 Npc2 protein_coding protein_coding MGP_C57BL6NJ_T0035612.1 MGP_C57BL6NJ_G0020259.1 mouse_genomes_project 12 80804227 81282386 + MGP_C57BL6NJ_P0035612 Gphn protein_coding protein_coding MGP_C57BL6NJ_T0035613.1 MGP_C57BL6NJ_G0020259.1 mouse_genomes_project 12 80804227 81282386 + MGP_C57BL6NJ_P0035613 Gphn protein_coding protein_coding MGP_C57BL6NJ_T0035614.1 MGP_C57BL6NJ_G0020259.1 mouse_genomes_project 12 80804350 81282385 + MGP_C57BL6NJ_P0035614 Gphn protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035446.1 MGP_C57BL6NJ_G0020202.1 mouse_genomes_project 12 72968124 72995358 + MGP_C57BL6NJ_P0035446 Actr10 protein_coding protein_coding MGP_C57BL6NJ_T0101101.1 MGP_C57BL6NJ_G0039147.1 mouse_genomes_project 12 32455851 32455983 - Gm23529 snoRNA snoRNA MGP_C57BL6NJ_T0035211.1 MGP_C57BL6NJ_G0020109.1 mouse_genomes_project 12 51457089 51459996 - MGP_C57BL6NJ_P0035211 Tuba1b protein_coding protein_coding MGP_C57BL6NJ_T0013155.1 MGP_C57BL6NJ_G0011200.1 mouse_genomes_project 12 112800609 112800898 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036128.1 MGP_C57BL6NJ_G0020412.1 mouse_genomes_project 12 105573192 105694578 - MGP_C57BL6NJ_P0036128 Ccdc88c protein_coding protein_coding MGP_C57BL6NJ_T0036129.1 MGP_C57BL6NJ_G0020412.1 mouse_genomes_project 12 105573192 105694578 - MGP_C57BL6NJ_P0036129 Ccdc88c protein_coding protein_coding MGP_C57BL6NJ_T0017768.1 MGP_C57BL6NJ_G0015625.1 mouse_genomes_project 12 76145373 76170197 - Gm15283 processed_transcript processed_transcript MGP_C57BL6NJ_T0098814.1 MGP_C57BL6NJ_G0036878.1 mouse_genomes_project 12 56531301 56532271 + pseudogene pseudogene MGP_C57BL6NJ_T0101095.1 MGP_C57BL6NJ_G0039141.1 mouse_genomes_project 12 19541144 19541277 + Gm25821 snoRNA snoRNA MGP_C57BL6NJ_T0000173.1 MGP_C57BL6NJ_G0000130.1 mouse_genomes_project 12 122141917 122142360 - MGP_C57BL6NJ_P0000173 Ighv8-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000174.1 MGP_C57BL6NJ_G0000130.1 mouse_genomes_project 12 122141933 122142334 - MGP_C57BL6NJ_P0000174 Ighv8-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036336.1 MGP_C57BL6NJ_G0020493.1 mouse_genomes_project 12 114363881 114388764 + MGP_C57BL6NJ_P0036336 Yy1 protein_coding protein_coding MGP_C57BL6NJ_T0036337.1 MGP_C57BL6NJ_G0020493.1 mouse_genomes_project 12 114378370 114387696 + Yy1 protein_coding retained_intron MGP_C57BL6NJ_T0035399.1 MGP_C57BL6NJ_G0020186.1 mouse_genomes_project 12 71244028 71247858 + MGP_C57BL6NJ_P0035399 Arf6 protein_coding protein_coding MGP_C57BL6NJ_T0035207.1 MGP_C57BL6NJ_G0020105.1 mouse_genomes_project 12 49551857 49570454 + MGP_C57BL6NJ_P0035207 Gm43517 protein_coding protein_coding MGP_C57BL6NJ_T0009983.1 MGP_C57BL6NJ_G0008068.1 mouse_genomes_project 12 29250707 29250811 - Gm25865 miRNA miRNA MGP_C57BL6NJ_T0010022.1 MGP_C57BL6NJ_G0008107.1 mouse_genomes_project 12 111081577 111081647 - Gm22120 miRNA miRNA MGP_C57BL6NJ_T0035498.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75013808 75056225 - MGP_C57BL6NJ_P0035498 4930447C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0035499.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75013808 75056079 - MGP_C57BL6NJ_P0035499 4930447C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0035500.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75025099 75041856 - MGP_C57BL6NJ_P0035500 4930447C04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035501.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75025153 75042052 - 4930447C04Rik protein_coding retained_intron MGP_C57BL6NJ_T0035502.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75025207 75041850 - 4930447C04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0035503.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75041812 75056176 - MGP_C57BL6NJ_P0035503 4930447C04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035504.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75049977 75078980 - MGP_C57BL6NJ_P0035504 4930447C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0035505.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75051505 75076221 - MGP_C57BL6NJ_P0035505 4930447C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0035506.1 MGP_C57BL6NJ_G0020220.1 mouse_genomes_project 12 75051509 75078289 - MGP_C57BL6NJ_P0035506 4930447C04Rik protein_coding protein_coding MGP_C57BL6NJ_T0003561.1 MGP_C57BL6NJ_G0003256.1 mouse_genomes_project 12 85916125 85922761 - 1700085C21Rik antisense antisense MGP_C57BL6NJ_T0006630.1 MGP_C57BL6NJ_G0005519.1 mouse_genomes_project 12 112438510 112458759 - Gm16086 lincRNA lincRNA MGP_C57BL6NJ_T0003555.1 MGP_C57BL6NJ_G0003250.1 mouse_genomes_project 12 76461524 76473968 - Gm29587 antisense antisense MGP_C57BL6NJ_T0000139.1 MGP_C57BL6NJ_G0000107.1 mouse_genomes_project 12 120925510 120925979 - MGP_C57BL6NJ_P0000139 Ighv1-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000140.1 MGP_C57BL6NJ_G0000107.1 mouse_genomes_project 12 120925510 120925804 - MGP_C57BL6NJ_P0000140 Ighv1-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000141.1 MGP_C57BL6NJ_G0000107.1 mouse_genomes_project 12 120925510 120925979 - MGP_C57BL6NJ_P0000141 Ighv1-12 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000095.1 MGP_C57BL6NJ_G0000076.1 mouse_genomes_project 12 120269563 120269994 - MGP_C57BL6NJ_P0000095 Ighv3-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0099815.1 MGP_C57BL6NJ_G0037861.1 mouse_genomes_project 12 11165621 11165728 - Gm22170 snRNA snRNA MGP_C57BL6NJ_T0036392.1 MGP_C57BL6NJ_G0020507.1 mouse_genomes_project 12 116673395 116710659 - Mok protein_coding retained_intron MGP_C57BL6NJ_T0036393.1 MGP_C57BL6NJ_G0020507.1 mouse_genomes_project 12 116673395 116710650 - MGP_C57BL6NJ_P0036393 Mok protein_coding protein_coding MGP_C57BL6NJ_T0036394.1 MGP_C57BL6NJ_G0020507.1 mouse_genomes_project 12 116673395 116710659 - MGP_C57BL6NJ_P0036394 Mok protein_coding protein_coding MGP_C57BL6NJ_T0036395.1 MGP_C57BL6NJ_G0020507.1 mouse_genomes_project 12 116673638 116710472 - MGP_C57BL6NJ_P0036395 Mok protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036396.1 MGP_C57BL6NJ_G0020507.1 mouse_genomes_project 12 116680652 116710647 - MGP_C57BL6NJ_P0036396 Mok protein_coding protein_coding MGP_C57BL6NJ_T0098980.1 MGP_C57BL6NJ_G0037044.1 mouse_genomes_project 12 45239286 45239370 + Gm22076 rRNA rRNA MGP_C57BL6NJ_T0010090.1 MGP_C57BL6NJ_G0008175.1 mouse_genomes_project 12 115398055 115398136 + Mir410 miRNA miRNA MGP_C57BL6NJ_T0001002.1 MGP_C57BL6NJ_G0000912.1 mouse_genomes_project 12 118722673 118725276 - TEC TEC MGP_C57BL6NJ_T0101157.1 MGP_C57BL6NJ_G0039203.1 mouse_genomes_project 12 115341073 115341144 + Gm22205 snoRNA snoRNA MGP_C57BL6NJ_T0035137.1 MGP_C57BL6NJ_G0020085.1 mouse_genomes_project 12 35581727 35923316 + MGP_C57BL6NJ_P0035137 Ispd protein_coding protein_coding MGP_C57BL6NJ_T0099336.1 MGP_C57BL6NJ_G0037396.1 mouse_genomes_project 12 88132148 88133119 - Gm17193 sense_intronic sense_intronic MGP_C57BL6NJ_T0000342.1 MGP_C57BL6NJ_G0000261.1 mouse_genomes_project 12 120075795 120076092 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034817.1 MGP_C57BL6NJ_G0019966.1 mouse_genomes_project 12 1790069 1798490 - MGP_C57BL6NJ_P0034817 Fkbp1b protein_coding protein_coding MGP_C57BL6NJ_T0010061.1 MGP_C57BL6NJ_G0008146.1 mouse_genomes_project 12 115371187 115371286 + Mir666 miRNA miRNA MGP_C57BL6NJ_T0035636.1 MGP_C57BL6NJ_G0020272.1 mouse_genomes_project 12 81867624 81940109 - MGP_C57BL6NJ_P0035636 Zfyve26 protein_coding protein_coding MGP_C57BL6NJ_T0036465.1 MGP_C57BL6NJ_G0020529.1 mouse_genomes_project 12 117782729 117796975 + MGP_C57BL6NJ_P0036465 Zfyve21 protein_coding protein_coding MGP_C57BL6NJ_T0006613.1 MGP_C57BL6NJ_G0005506.1 mouse_genomes_project 12 104177875 104179797 - 1700064M15Rik lincRNA lincRNA MGP_C57BL6NJ_T0099855.1 MGP_C57BL6NJ_G0037901.1 mouse_genomes_project 12 105426602 105426708 - Gm25801 snRNA snRNA MGP_C57BL6NJ_T0036563.1 MGP_C57BL6NJ_G0020566.1 mouse_genomes_project 12 122824579 122881053 - MGP_C57BL6NJ_P0036563 Wdr60 protein_coding protein_coding MGP_C57BL6NJ_T0035568.1 MGP_C57BL6NJ_G0020242.1 mouse_genomes_project 12 78640930 78688029 - MGP_C57BL6NJ_P0035568 Tex21 protein_coding protein_coding MGP_C57BL6NJ_T0035116.1 MGP_C57BL6NJ_G0020073.1 mouse_genomes_project 12 34102011 34103687 + MGP_C57BL6NJ_P0035116 Prps1l1 protein_coding protein_coding MGP_C57BL6NJ_T0011589.1 MGP_C57BL6NJ_G0009674.1 mouse_genomes_project 12 71881397 71881707 + Gm22058 misc_RNA misc_RNA MGP_C57BL6NJ_T0034738.1 MGP_C57BL6NJ_G0019948.1 mouse_genomes_project 12 170254 211590 + MGP_C57BL6NJ_P0034738 Kif3c protein_coding protein_coding MGP_C57BL6NJ_T0035647.1 MGP_C57BL6NJ_G0020279.1 mouse_genomes_project 12 83382634 83395466 - MGP_C57BL6NJ_P0035647 Erh protein_coding protein_coding MGP_C57BL6NJ_T0035648.1 MGP_C57BL6NJ_G0020279.1 mouse_genomes_project 12 83384561 83394957 - MGP_C57BL6NJ_P0035648 Erh protein_coding protein_coding MGP_C57BL6NJ_T0006667.1 MGP_C57BL6NJ_G0005536.1 mouse_genomes_project 12 117345753 117349945 - Gm10425 lincRNA lincRNA MGP_C57BL6NJ_T0000074.1 MGP_C57BL6NJ_G0000060.1 mouse_genomes_project 12 119904234 119904694 - MGP_C57BL6NJ_P0000074 Ighv5-9-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000075.1 MGP_C57BL6NJ_G0000060.1 mouse_genomes_project 12 119904234 119904754 - MGP_C57BL6NJ_P0000075 Ighv5-9-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035641.1 MGP_C57BL6NJ_G0020275.1 mouse_genomes_project 12 82871346 82973969 - MGP_C57BL6NJ_P0035641 Actn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035642.1 MGP_C57BL6NJ_G0020275.1 mouse_genomes_project 12 82871348 82974249 - MGP_C57BL6NJ_P0035642 Actn1 protein_coding protein_coding MGP_C57BL6NJ_T0035643.1 MGP_C57BL6NJ_G0020275.1 mouse_genomes_project 12 82872128 82973969 - MGP_C57BL6NJ_P0035643 Actn1 protein_coding protein_coding MGP_C57BL6NJ_T0035526.1 MGP_C57BL6NJ_G0020229.1 mouse_genomes_project 12 75791526 75995318 + MGP_C57BL6NJ_P0035526 Prkch protein_coding protein_coding MGP_C57BL6NJ_T0035527.1 MGP_C57BL6NJ_G0020229.1 mouse_genomes_project 12 75791572 75977393 + MGP_C57BL6NJ_P0035527 Prkch protein_coding protein_coding MGP_C57BL6NJ_T0034876.1 MGP_C57BL6NJ_G0019985.1 mouse_genomes_project 12 7793941 7816284 + MGP_C57BL6NJ_P0034876 Nt5c1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034877.1 MGP_C57BL6NJ_G0019985.1 mouse_genomes_project 12 7793947 7816287 + MGP_C57BL6NJ_P0034877 Nt5c1b protein_coding protein_coding MGP_C57BL6NJ_T0034878.1 MGP_C57BL6NJ_G0019985.1 mouse_genomes_project 12 7793947 7800276 + MGP_C57BL6NJ_P0034878 Nt5c1b protein_coding protein_coding MGP_C57BL6NJ_T0034879.1 MGP_C57BL6NJ_G0019985.1 mouse_genomes_project 12 7794012 7816284 + MGP_C57BL6NJ_P0034879 Nt5c1b protein_coding protein_coding MGP_C57BL6NJ_T0034813.1 MGP_C57BL6NJ_G0019963.1 mouse_genomes_project 12 1685821 1709860 - MGP_C57BL6NJ_P0034813 Fam228b protein_coding protein_coding MGP_C57BL6NJ_T0017777.1 MGP_C57BL6NJ_G0015631.1 mouse_genomes_project 12 106761680 106763776 + Gm20036 processed_transcript processed_transcript MGP_C57BL6NJ_T0034957.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19578092 19634027 - MGP_C57BL6NJ_P0034957 Adam17 protein_coding protein_coding MGP_C57BL6NJ_T0034958.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19578100 19634066 - MGP_C57BL6NJ_P0034958 Adam17 protein_coding protein_coding MGP_C57BL6NJ_T0034959.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19578100 19634027 - MGP_C57BL6NJ_P0034959 Adam17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034960.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19578100 19634027 - MGP_C57BL6NJ_P0034960 Adam17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034961.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19580109 19583874 - Adam17 protein_coding processed_transcript MGP_C57BL6NJ_T0034962.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19582563 19598779 - Adam17 protein_coding retained_intron MGP_C57BL6NJ_T0034963.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19584656 19587105 - Adam17 protein_coding retained_intron MGP_C57BL6NJ_T0034964.1 MGP_C57BL6NJ_G0020017.1 mouse_genomes_project 12 19606753 19633968 - MGP_C57BL6NJ_P0034964 Adam17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036041.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95507511 95660251 - MGP_C57BL6NJ_P0036041 protein_coding protein_coding MGP_C57BL6NJ_T0036042.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95512442 95616404 - MGP_C57BL6NJ_P0036042 protein_coding protein_coding MGP_C57BL6NJ_T0036043.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95576319 95586734 - protein_coding processed_transcript MGP_C57BL6NJ_T0036044.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95586841 95652952 - MGP_C57BL6NJ_P0036044 protein_coding protein_coding MGP_C57BL6NJ_T0036045.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95607642 95644921 - protein_coding processed_transcript MGP_C57BL6NJ_T0036046.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95616166 95618633 - MGP_C57BL6NJ_P0036046 protein_coding protein_coding MGP_C57BL6NJ_T0036047.1 MGP_C57BL6NJ_G0020390.1 mouse_genomes_project 12 95659615 95662202 - protein_coding processed_transcript MGP_C57BL6NJ_T0035226.1 MGP_C57BL6NJ_G0020116.1 mouse_genomes_project 12 52271108 52377009 - MGP_C57BL6NJ_P0035226 Heatr5a protein_coding protein_coding MGP_C57BL6NJ_T0035227.1 MGP_C57BL6NJ_G0020116.1 mouse_genomes_project 12 52272547 52376937 - MGP_C57BL6NJ_P0035227 Heatr5a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006665.1 MGP_C57BL6NJ_G0005535.1 mouse_genomes_project 12 117186364 117188966 + A230087F16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006666.1 MGP_C57BL6NJ_G0005535.1 mouse_genomes_project 12 117186386 117195624 + A230087F16Rik lincRNA lincRNA MGP_C57BL6NJ_T0010080.1 MGP_C57BL6NJ_G0008165.1 mouse_genomes_project 12 115389206 115389279 + Mir485 miRNA miRNA MGP_C57BL6NJ_T0036270.1 MGP_C57BL6NJ_G0020472.1 mouse_genomes_project 12 110307388 110314581 + MGP_C57BL6NJ_P0036270 Tcl1b1 protein_coding protein_coding MGP_C57BL6NJ_T0017770.1 MGP_C57BL6NJ_G0015627.1 mouse_genomes_project 12 84395272 84416504 + 6530401F13Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0036491.1 MGP_C57BL6NJ_G0020541.1 mouse_genomes_project 12 118672152 118676477 + MGP_C57BL6NJ_P0036491 Siva1 protein_coding protein_coding MGP_C57BL6NJ_T0036492.1 MGP_C57BL6NJ_G0020541.1 mouse_genomes_project 12 118672152 118676477 + MGP_C57BL6NJ_P0036492 Siva1 protein_coding protein_coding MGP_C57BL6NJ_T0000077.1 MGP_C57BL6NJ_G0000062.1 mouse_genomes_project 12 119944854 119945303 - MGP_C57BL6NJ_P0000077 Ighv2-9-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0013164.1 MGP_C57BL6NJ_G0011209.1 mouse_genomes_project 12 120528187 120528829 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035655.1 MGP_C57BL6NJ_G0020283.1 mouse_genomes_project 12 83553740 83669031 + MGP_C57BL6NJ_P0035655 Susd6 protein_coding protein_coding MGP_C57BL6NJ_T0003562.1 MGP_C57BL6NJ_G0003257.1 mouse_genomes_project 12 86053589 86094571 - Gm29530 antisense antisense MGP_C57BL6NJ_T0035113.1 MGP_C57BL6NJ_G0020071.1 mouse_genomes_project 12 33448955 33618536 - MGP_C57BL6NJ_P0035113 Hdac9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035114.1 MGP_C57BL6NJ_G0020071.1 mouse_genomes_project 12 33448968 33618644 - MGP_C57BL6NJ_P0035114 Hdac9 protein_coding protein_coding MGP_C57BL6NJ_T0000366.1 MGP_C57BL6NJ_G0000285.1 mouse_genomes_project 12 121133982 121134416 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035064.1 MGP_C57BL6NJ_G0020055.1 mouse_genomes_project 12 30531788 30546562 - MGP_C57BL6NJ_P0035064 Dus4l protein_coding protein_coding MGP_C57BL6NJ_T0035323.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60012182 60117979 + MGP_C57BL6NJ_P0035323 Ctage5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035324.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054340 60117974 + MGP_C57BL6NJ_P0035324 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035325.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054366 60117971 + MGP_C57BL6NJ_P0035325 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035326.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054383 60117974 + MGP_C57BL6NJ_P0035326 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035327.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054385 60076647 + MGP_C57BL6NJ_P0035327 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035328.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054405 60118020 + MGP_C57BL6NJ_P0035328 Ctage5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035329.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054430 60096157 + MGP_C57BL6NJ_P0035329 Ctage5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035330.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60054997 60117748 + MGP_C57BL6NJ_P0035330 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035331.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60055457 60118020 + MGP_C57BL6NJ_P0035331 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035332.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60055642 60073937 + MGP_C57BL6NJ_P0035332 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035333.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60055906 60119410 + MGP_C57BL6NJ_P0035333 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035334.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60056073 60117971 + MGP_C57BL6NJ_P0035334 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035335.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60056087 60117750 + MGP_C57BL6NJ_P0035335 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035336.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60056101 60072040 + Ctage5 protein_coding retained_intron MGP_C57BL6NJ_T0035337.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60056122 60118020 + MGP_C57BL6NJ_P0035337 Ctage5 protein_coding protein_coding MGP_C57BL6NJ_T0035338.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60060814 60117750 + MGP_C57BL6NJ_P0035338 Ctage5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035339.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60076619 60117750 + MGP_C57BL6NJ_P0035339 Ctage5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035340.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60090106 60111886 + MGP_C57BL6NJ_P0035340 Ctage5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035341.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60094001 60103064 + Ctage5 protein_coding retained_intron MGP_C57BL6NJ_T0035342.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60096070 60117438 + Ctage5 protein_coding retained_intron MGP_C57BL6NJ_T0035343.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60096199 60098385 + Ctage5 protein_coding retained_intron MGP_C57BL6NJ_T0035344.1 MGP_C57BL6NJ_G0020161.1 mouse_genomes_project 12 60107101 60116317 + Ctage5 protein_coding retained_intron MGP_C57BL6NJ_T0017778.1 MGP_C57BL6NJ_G0015632.1 mouse_genomes_project 12 107561259 107618677 - Gm28373 processed_transcript processed_transcript MGP_C57BL6NJ_T0036511.1 MGP_C57BL6NJ_G0020547.1 mouse_genomes_project 12 118847197 118853931 + MGP_C57BL6NJ_P0036511 BC022687 protein_coding protein_coding MGP_C57BL6NJ_T0036512.1 MGP_C57BL6NJ_G0020547.1 mouse_genomes_project 12 118847197 118854466 + MGP_C57BL6NJ_P0036512 BC022687 protein_coding protein_coding MGP_C57BL6NJ_T0010003.1 MGP_C57BL6NJ_G0008088.1 mouse_genomes_project 12 78330686 78330769 + Mir5101 miRNA miRNA MGP_C57BL6NJ_T0035109.1 MGP_C57BL6NJ_G0020068.1 mouse_genomes_project 12 32971025 32971911 + MGP_C57BL6NJ_P0035109 Ferd3l protein_coding protein_coding MGP_C57BL6NJ_T0036000.1 MGP_C57BL6NJ_G0020378.1 mouse_genomes_project 12 90903933 90925937 - MGP_C57BL6NJ_P0036000 Snw1 protein_coding protein_coding MGP_C57BL6NJ_T0101155.1 MGP_C57BL6NJ_G0039201.1 mouse_genomes_project 12 115336802 115336875 + Gm23787 snoRNA snoRNA MGP_C57BL6NJ_T0035220.1 MGP_C57BL6NJ_G0020113.1 mouse_genomes_project 12 51975917 52066844 - MGP_C57BL6NJ_P0035220 Strn3 protein_coding protein_coding MGP_C57BL6NJ_T0035221.1 MGP_C57BL6NJ_G0020113.1 mouse_genomes_project 12 51975917 52066844 - MGP_C57BL6NJ_P0035221 Strn3 protein_coding protein_coding MGP_C57BL6NJ_T0036196.1 MGP_C57BL6NJ_G0020437.1 mouse_genomes_project 12 108255004 108298182 - MGP_C57BL6NJ_P0036196 Asb2 protein_coding protein_coding MGP_C57BL6NJ_T0036197.1 MGP_C57BL6NJ_G0020437.1 mouse_genomes_project 12 108255008 108269446 - Asb2 protein_coding retained_intron MGP_C57BL6NJ_T0036198.1 MGP_C57BL6NJ_G0020437.1 mouse_genomes_project 12 108255008 108272289 - MGP_C57BL6NJ_P0036198 Asb2 protein_coding protein_coding MGP_C57BL6NJ_T0036199.1 MGP_C57BL6NJ_G0020437.1 mouse_genomes_project 12 108268730 108270650 - Asb2 protein_coding processed_transcript MGP_C57BL6NJ_T0035138.1 MGP_C57BL6NJ_G0020086.1 mouse_genomes_project 12 36371864 36447757 + MGP_C57BL6NJ_P0035138 Meox2 protein_coding protein_coding MGP_C57BL6NJ_T0099858.1 MGP_C57BL6NJ_G0037904.1 mouse_genomes_project 12 119250019 119250123 + Gm25622 snRNA snRNA MGP_C57BL6NJ_T0000368.1 MGP_C57BL6NJ_G0000287.1 mouse_genomes_project 12 121211475 121211907 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0011590.1 MGP_C57BL6NJ_G0009675.1 mouse_genomes_project 12 72965644 72965954 + Gm24857 misc_RNA misc_RNA MGP_C57BL6NJ_T0006634.1 MGP_C57BL6NJ_G0005523.1 mouse_genomes_project 12 113137852 113152324 - 4930465M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0006635.1 MGP_C57BL6NJ_G0005523.1 mouse_genomes_project 12 113143492 113152332 - 4930465M20Rik lincRNA lincRNA MGP_C57BL6NJ_T0036349.1 MGP_C57BL6NJ_G0020497.1 mouse_genomes_project 12 114470436 114616258 + MGP_C57BL6NJ_P0036349 Wdr25 protein_coding protein_coding MGP_C57BL6NJ_T0036350.1 MGP_C57BL6NJ_G0020497.1 mouse_genomes_project 12 114470481 114616131 + MGP_C57BL6NJ_P0036350 Wdr25 protein_coding protein_coding MGP_C57BL6NJ_T0035669.1 MGP_C57BL6NJ_G0020286.1 mouse_genomes_project 12 83833241 84016704 + MGP_C57BL6NJ_P0035669 Smoc1 protein_coding protein_coding MGP_C57BL6NJ_T0035670.1 MGP_C57BL6NJ_G0020286.1 mouse_genomes_project 12 83833261 84016700 + MGP_C57BL6NJ_P0035670 Smoc1 protein_coding protein_coding MGP_C57BL6NJ_T0035671.1 MGP_C57BL6NJ_G0020286.1 mouse_genomes_project 12 83833261 84016700 + MGP_C57BL6NJ_P0035671 Smoc1 protein_coding protein_coding MGP_C57BL6NJ_T0003559.1 MGP_C57BL6NJ_G0003254.1 mouse_genomes_project 12 84351573 84356098 + Gm28370 antisense antisense MGP_C57BL6NJ_T0000067.1 MGP_C57BL6NJ_G0000054.1 mouse_genomes_project 12 119694896 119697198 - MGP_C57BL6NJ_P0000067 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036179.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107859786 108113462 + MGP_C57BL6NJ_P0036179 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036180.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107861511 108113074 + MGP_C57BL6NJ_P0036180 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036181.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107918426 107922814 + Unc79 protein_coding retained_intron MGP_C57BL6NJ_T0036182.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107919197 107980994 + MGP_C57BL6NJ_P0036182 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036183.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107919248 108113459 + MGP_C57BL6NJ_P0036183 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036184.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107919305 108113526 + MGP_C57BL6NJ_P0036184 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036185.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 107980644 107993683 + Unc79 protein_coding retained_intron MGP_C57BL6NJ_T0036186.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 108020593 108036773 + MGP_C57BL6NJ_P0036186 Unc79 protein_coding protein_coding MGP_C57BL6NJ_T0036187.1 MGP_C57BL6NJ_G0020434.1 mouse_genomes_project 12 108060021 108073653 + MGP_C57BL6NJ_P0036187 Unc79 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035739.1 MGP_C57BL6NJ_G0020303.1 mouse_genomes_project 12 86586507 86653003 - MGP_C57BL6NJ_P0035739 Zfyve1 protein_coding protein_coding MGP_C57BL6NJ_T0035294.1 MGP_C57BL6NJ_G0020150.1 mouse_genomes_project 12 58063346 58072829 + MGP_C57BL6NJ_P0035294 Prps1l3 protein_coding protein_coding MGP_C57BL6NJ_T0101097.1 MGP_C57BL6NJ_G0039143.1 mouse_genomes_project 12 26227810 26227935 + Gm24326 snoRNA snoRNA MGP_C57BL6NJ_T0101110.1 MGP_C57BL6NJ_G0039156.1 mouse_genomes_project 12 49756193 49756321 - Gm25015 snoRNA snoRNA MGP_C57BL6NJ_T0035758.1 MGP_C57BL6NJ_G0020305.1 mouse_genomes_project 12 86753615 86800465 + MGP_C57BL6NJ_P0035758 Psen1 protein_coding protein_coding MGP_C57BL6NJ_T0035759.1 MGP_C57BL6NJ_G0020305.1 mouse_genomes_project 12 86753975 86801551 + MGP_C57BL6NJ_P0035759 Psen1 protein_coding protein_coding MGP_C57BL6NJ_T0035678.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84188195 84344487 - MGP_C57BL6NJ_P0035678 Cox16 protein_coding protein_coding MGP_C57BL6NJ_T0035679.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84188337 84344450 - MGP_C57BL6NJ_P0035679 Cox16 protein_coding protein_coding MGP_C57BL6NJ_T0035683.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84326998 84344497 - MGP_C57BL6NJ_P0035683 Cox16 protein_coding protein_coding MGP_C57BL6NJ_T0035684.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84328387 84344206 - Cox16 protein_coding processed_transcript MGP_C57BL6NJ_T0035685.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84328387 84344490 - MGP_C57BL6NJ_P0035685 Cox16 protein_coding protein_coding MGP_C57BL6NJ_T0035686.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84328389 84344228 - Cox16 protein_coding processed_transcript MGP_C57BL6NJ_T0035687.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84330528 84344504 - Cox16 protein_coding processed_transcript MGP_C57BL6NJ_T0035688.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84330549 84344491 - MGP_C57BL6NJ_P0035688 Cox16 protein_coding protein_coding MGP_C57BL6NJ_T0035692.1 MGP_C57BL6NJ_G0020289.1 mouse_genomes_project 12 84337545 84344462 - Cox16 protein_coding retained_intron MGP_C57BL6NJ_T0006637.1 MGP_C57BL6NJ_G0005525.1 mouse_genomes_project 12 113811503 113829920 - 4930478K11Rik lincRNA lincRNA MGP_C57BL6NJ_T0034814.1 MGP_C57BL6NJ_G0019964.1 mouse_genomes_project 12 1709887 1718820 + MGP_C57BL6NJ_P0034814 Pfn4 protein_coding protein_coding MGP_C57BL6NJ_T0034815.1 MGP_C57BL6NJ_G0019964.1 mouse_genomes_project 12 1710043 1718792 + MGP_C57BL6NJ_P0034815 Pfn4 protein_coding protein_coding MGP_C57BL6NJ_T0099846.1 MGP_C57BL6NJ_G0037892.1 mouse_genomes_project 12 79966322 79966482 + Gm25926 snRNA snRNA MGP_C57BL6NJ_T0036589.1 MGP_C57BL6NJ_G0020578.1 mouse_genomes_project 12 126794848 126866073 + MGP_C57BL6NJ_P0036589 Tmem196 protein_coding protein_coding MGP_C57BL6NJ_T0036590.1 MGP_C57BL6NJ_G0020578.1 mouse_genomes_project 12 126795300 126865675 + MGP_C57BL6NJ_P0036590 Tmem196 protein_coding protein_coding MGP_C57BL6NJ_T0036591.1 MGP_C57BL6NJ_G0020578.1 mouse_genomes_project 12 126795314 126861747 + MGP_C57BL6NJ_P0036591 Tmem196 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036592.1 MGP_C57BL6NJ_G0020578.1 mouse_genomes_project 12 126795448 126865568 + MGP_C57BL6NJ_P0036592 Tmem196 protein_coding protein_coding MGP_C57BL6NJ_T0036593.1 MGP_C57BL6NJ_G0020578.1 mouse_genomes_project 12 126795460 126865916 + MGP_C57BL6NJ_P0036593 Tmem196 protein_coding protein_coding MGP_C57BL6NJ_T0099546.1 MGP_C57BL6NJ_G0037596.1 mouse_genomes_project 12 75084014 75105532 + Gm26709 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0035793.1 MGP_C57BL6NJ_G0020318.1 mouse_genomes_project 12 87275108 87345824 - MGP_C57BL6NJ_P0035793 Elmsan1 protein_coding protein_coding MGP_C57BL6NJ_T0035794.1 MGP_C57BL6NJ_G0020318.1 mouse_genomes_project 12 87275210 87320997 - MGP_C57BL6NJ_P0035794 Elmsan1 protein_coding protein_coding MGP_C57BL6NJ_T0035795.1 MGP_C57BL6NJ_G0020318.1 mouse_genomes_project 12 87278877 87282218 - Elmsan1 protein_coding processed_transcript MGP_C57BL6NJ_T0035796.1 MGP_C57BL6NJ_G0020318.1 mouse_genomes_project 12 87283513 87287124 - Elmsan1 protein_coding processed_transcript MGP_C57BL6NJ_T0101128.1 MGP_C57BL6NJ_G0039174.1 mouse_genomes_project 12 85737777 85737913 - Gm22149 snoRNA snoRNA MGP_C57BL6NJ_T0036257.1 MGP_C57BL6NJ_G0020462.1 mouse_genomes_project 12 109509111 109516712 + MGP_C57BL6NJ_P0036257 Serpina3n protein_coding protein_coding MGP_C57BL6NJ_T0036252.1 MGP_C57BL6NJ_G0020458.1 mouse_genomes_project 12 109344316 109350424 + MGP_C57BL6NJ_P0036252 protein_coding protein_coding MGP_C57BL6NJ_T0000157.1 MGP_C57BL6NJ_G0000117.1 mouse_genomes_project 12 121589230 121589664 - MGP_C57BL6NJ_P0000157 Ighv1-54 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035013.1 MGP_C57BL6NJ_G0020038.1 mouse_genomes_project 12 27449140 27573473 + MGP_C57BL6NJ_P0035013 Tssc1 protein_coding protein_coding MGP_C57BL6NJ_T0101100.1 MGP_C57BL6NJ_G0039146.1 mouse_genomes_project 12 30099670 30099800 - Gm24613 snoRNA snoRNA MGP_C57BL6NJ_T0035356.1 MGP_C57BL6NJ_G0020166.1 mouse_genomes_project 12 66420542 66427223 + MGP_C57BL6NJ_P0035356 Gm527 protein_coding protein_coding MGP_C57BL6NJ_T0034894.1 MGP_C57BL6NJ_G0019996.1 mouse_genomes_project 12 10848483 10876589 - MGP_C57BL6NJ_P0034894 Ddx1 protein_coding protein_coding MGP_C57BL6NJ_T0000356.1 MGP_C57BL6NJ_G0000275.1 mouse_genomes_project 12 120762012 120762314 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036062.1 MGP_C57BL6NJ_G0020395.1 mouse_genomes_project 12 102872215 103018056 - MGP_C57BL6NJ_P0036062 Kcnk10 protein_coding protein_coding MGP_C57BL6NJ_T0101132.1 MGP_C57BL6NJ_G0039178.1 mouse_genomes_project 12 107128221 107128437 - Gm25203 snoRNA snoRNA MGP_C57BL6NJ_T0035650.1 MGP_C57BL6NJ_G0020281.1 mouse_genomes_project 12 83449030 83480613 + MGP_C57BL6NJ_P0035650 Plekhd1 protein_coding protein_coding MGP_C57BL6NJ_T0035651.1 MGP_C57BL6NJ_G0020281.1 mouse_genomes_project 12 83463252 83477083 + Plekhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0035652.1 MGP_C57BL6NJ_G0020281.1 mouse_genomes_project 12 83477155 83478406 + MGP_C57BL6NJ_P0035652 Plekhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035653.1 MGP_C57BL6NJ_G0020281.1 mouse_genomes_project 12 83478130 83479309 + Plekhd1 protein_coding retained_intron MGP_C57BL6NJ_T0013172.1 MGP_C57BL6NJ_G0011217.1 mouse_genomes_project 12 123237958 123238256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010096.1 MGP_C57BL6NJ_G0008181.1 mouse_genomes_project 12 118118346 118118422 + Mir203 miRNA miRNA MGP_C57BL6NJ_T0010086.1 MGP_C57BL6NJ_G0008171.1 mouse_genomes_project 12 115397498 115397578 - Gm24321 miRNA miRNA MGP_C57BL6NJ_T0013163.1 MGP_C57BL6NJ_G0011208.1 mouse_genomes_project 12 120447022 120447334 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036060.1 MGP_C57BL6NJ_G0020393.1 mouse_genomes_project 12 102581956 102650189 - MGP_C57BL6NJ_P0036060 Galc protein_coding protein_coding MGP_C57BL6NJ_T0035139.1 MGP_C57BL6NJ_G0020087.1 mouse_genomes_project 12 36513564 36903644 + MGP_C57BL6NJ_P0035139 Agmo protein_coding protein_coding MGP_C57BL6NJ_T0035140.1 MGP_C57BL6NJ_G0020087.1 mouse_genomes_project 12 36513673 36517369 + MGP_C57BL6NJ_P0035140 Agmo protein_coding protein_coding MGP_C57BL6NJ_T0035141.1 MGP_C57BL6NJ_G0020087.1 mouse_genomes_project 12 36513702 36709885 + Agmo protein_coding retained_intron MGP_C57BL6NJ_T0035142.1 MGP_C57BL6NJ_G0020087.1 mouse_genomes_project 12 36513783 36737311 + MGP_C57BL6NJ_P0035142 Agmo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035143.1 MGP_C57BL6NJ_G0020087.1 mouse_genomes_project 12 36513965 36883802 + MGP_C57BL6NJ_P0035143 Agmo protein_coding protein_coding MGP_C57BL6NJ_T0006663.1 MGP_C57BL6NJ_G0005533.1 mouse_genomes_project 12 116710748 116713507 + 4921507G05Rik lincRNA lincRNA MGP_C57BL6NJ_T0010025.1 MGP_C57BL6NJ_G0008110.1 mouse_genomes_project 12 114410197 114410293 + Mir345 miRNA miRNA MGP_C57BL6NJ_T0035427.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72113010 72145076 + Abhd12b protein_coding retained_intron MGP_C57BL6NJ_T0035428.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72113025 72145616 + MGP_C57BL6NJ_P0035428 Abhd12b protein_coding protein_coding MGP_C57BL6NJ_T0035429.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72113025 72145616 + MGP_C57BL6NJ_P0035429 Abhd12b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035430.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72113025 72145616 + MGP_C57BL6NJ_P0035430 Abhd12b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035431.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72113025 72145616 + MGP_C57BL6NJ_P0035431 Abhd12b protein_coding protein_coding MGP_C57BL6NJ_T0035432.1 MGP_C57BL6NJ_G0020197.1 mouse_genomes_project 12 72143776 72145076 + Abhd12b protein_coding retained_intron MGP_C57BL6NJ_T0035209.1 MGP_C57BL6NJ_G0020107.1 mouse_genomes_project 12 50612310 50948145 - MGP_C57BL6NJ_P0035209 Prkd1 protein_coding protein_coding MGP_C57BL6NJ_T0101125.1 MGP_C57BL6NJ_G0039171.1 mouse_genomes_project 12 80741996 80742117 + Gm24994 snoRNA snoRNA MGP_C57BL6NJ_T0000113.1 MGP_C57BL6NJ_G0000088.1 mouse_genomes_project 12 120558352 120558783 - MGP_C57BL6NJ_P0000113 Ighv3-6 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000114.1 MGP_C57BL6NJ_G0000088.1 mouse_genomes_project 12 120558357 120558783 - MGP_C57BL6NJ_P0000114 Ighv3-6 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035581.1 MGP_C57BL6NJ_G0020248.1 mouse_genomes_project 12 78875002 78898212 + MGP_C57BL6NJ_P0035581 Ppp1r36 protein_coding protein_coding MGP_C57BL6NJ_T0102774.1 MGP_C57BL6NJ_G0040569.1 mouse_genomes_project 12 19346108 19346234 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013099.1 MGP_C57BL6NJ_G0011144.1 mouse_genomes_project 12 11422231 11423223 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010087.1 MGP_C57BL6NJ_G0008172.1 mouse_genomes_project 12 115397498 115397577 + Mir409 miRNA miRNA MGP_C57BL6NJ_T0101120.1 MGP_C57BL6NJ_G0039166.1 mouse_genomes_project 12 67111724 67111856 - Gm23948 snoRNA snoRNA MGP_C57BL6NJ_T0036246.1 MGP_C57BL6NJ_G0020455.1 mouse_genomes_project 12 109199679 109211223 + MGP_C57BL6NJ_P0036246 Serpina3b protein_coding protein_coding MGP_C57BL6NJ_T0013129.1 MGP_C57BL6NJ_G0011174.1 mouse_genomes_project 12 82810338 82811233 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098979.1 MGP_C57BL6NJ_G0037043.1 mouse_genomes_project 12 27759093 27759208 - Gm23342 rRNA rRNA MGP_C57BL6NJ_T0098816.1 MGP_C57BL6NJ_G0036880.1 mouse_genomes_project 12 87578687 87580071 + pseudogene pseudogene MGP_C57BL6NJ_T0098977.1 MGP_C57BL6NJ_G0037041.1 mouse_genomes_project 12 24144045 24144151 + Gm22527 rRNA rRNA MGP_C57BL6NJ_T0035862.1 MGP_C57BL6NJ_G0020337.1 mouse_genomes_project 12 88187431 88202270 + MGP_C57BL6NJ_P0035862 Fcf1 protein_coding protein_coding MGP_C57BL6NJ_T0035863.1 MGP_C57BL6NJ_G0020337.1 mouse_genomes_project 12 88187515 88202258 + MGP_C57BL6NJ_P0035863 Fcf1 protein_coding protein_coding MGP_C57BL6NJ_T0035864.1 MGP_C57BL6NJ_G0020337.1 mouse_genomes_project 12 88199176 88202264 + Fcf1 protein_coding retained_intron MGP_C57BL6NJ_T0035644.1 MGP_C57BL6NJ_G0020276.1 mouse_genomes_project 12 83059462 83159068 - MGP_C57BL6NJ_P0035644 Dcaf5 protein_coding protein_coding MGP_C57BL6NJ_T0035420.1 MGP_C57BL6NJ_G0020193.1 mouse_genomes_project 12 71838325 71916802 + MGP_C57BL6NJ_P0035420 Atl1 protein_coding protein_coding MGP_C57BL6NJ_T0006612.1 MGP_C57BL6NJ_G0005505.1 mouse_genomes_project 12 104102931 104168458 + Gm26839 lincRNA lincRNA MGP_C57BL6NJ_T0010035.1 MGP_C57BL6NJ_G0008120.1 mouse_genomes_project 12 115236775 115236864 + Mir3070b miRNA miRNA MGP_C57BL6NJ_T0098989.1 MGP_C57BL6NJ_G0037053.1 mouse_genomes_project 12 101702705 101702785 - Gm23558 rRNA rRNA MGP_C57BL6NJ_T0017758.1 MGP_C57BL6NJ_G0015620.1 mouse_genomes_project 12 19497511 19501346 - Gm20535 processed_transcript processed_transcript MGP_C57BL6NJ_T0017779.1 MGP_C57BL6NJ_G0015633.1 mouse_genomes_project 12 109052017 109064243 - Gm28577 processed_transcript processed_transcript MGP_C57BL6NJ_T0000064.1 MGP_C57BL6NJ_G0000052.1 mouse_genomes_project 12 119683661 119684148 - MGP_C57BL6NJ_P0000064 Ighv5-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000065.1 MGP_C57BL6NJ_G0000052.1 mouse_genomes_project 12 119683661 119684148 - MGP_C57BL6NJ_P0000065 Ighv5-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035247.1 MGP_C57BL6NJ_G0020127.1 mouse_genomes_project 12 55470900 55474961 - MGP_C57BL6NJ_P0035247 Cfl2 protein_coding protein_coding MGP_C57BL6NJ_T0010013.1 MGP_C57BL6NJ_G0008098.1 mouse_genomes_project 12 93166526 93166592 + Gm23989 miRNA miRNA MGP_C57BL6NJ_T0101139.1 MGP_C57BL6NJ_G0039185.1 mouse_genomes_project 12 115290278 115290351 + Gm24899 snoRNA snoRNA MGP_C57BL6NJ_T0099333.1 MGP_C57BL6NJ_G0037394.1 mouse_genomes_project 12 44815790 44827435 - Gm15902 sense_intronic sense_intronic MGP_C57BL6NJ_T0000343.1 MGP_C57BL6NJ_G0000262.1 mouse_genomes_project 12 120148885 120223994 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0102413.1 MGP_C57BL6NJ_G0040331.1 mouse_genomes_project 12 109328484 109333581 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102414.1 MGP_C57BL6NJ_G0040331.1 mouse_genomes_project 12 109330731 109334287 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0035782.1 MGP_C57BL6NJ_G0020314.1 mouse_genomes_project 12 87183412 87190655 + MGP_C57BL6NJ_P0035782 Acot5 protein_coding protein_coding MGP_C57BL6NJ_T0035783.1 MGP_C57BL6NJ_G0020314.1 mouse_genomes_project 12 87183412 87190654 + MGP_C57BL6NJ_P0035783 Acot5 protein_coding protein_coding MGP_C57BL6NJ_T0035006.1 MGP_C57BL6NJ_G0020035.1 mouse_genomes_project 12 27340020 27351375 + MGP_C57BL6NJ_P0035006 Rnaseh1 protein_coding protein_coding MGP_C57BL6NJ_T0035589.1 MGP_C57BL6NJ_G0020252.1 mouse_genomes_project 12 79245327 79262762 + MGP_C57BL6NJ_P0035589 Churc1 protein_coding protein_coding MGP_C57BL6NJ_T0035592.1 MGP_C57BL6NJ_G0020252.1 mouse_genomes_project 12 79248357 79255789 + Churc1 protein_coding retained_intron MGP_C57BL6NJ_T0101092.1 MGP_C57BL6NJ_G0039138.1 mouse_genomes_project 12 9554113 9554242 + Gm25610 snoRNA snoRNA MGP_C57BL6NJ_T0017767.1 MGP_C57BL6NJ_G0015624.1 mouse_genomes_project 12 73356248 73360191 - 4930474H06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0006623.1 MGP_C57BL6NJ_G0005515.1 mouse_genomes_project 12 111888093 111904332 + Gm17033 lincRNA lincRNA MGP_C57BL6NJ_T0035032.1 MGP_C57BL6NJ_G0020043.1 mouse_genomes_project 12 29380190 29386961 + MGP_C57BL6NJ_P0035032 Tmem18 protein_coding protein_coding MGP_C57BL6NJ_T0010046.1 MGP_C57BL6NJ_G0008131.1 mouse_genomes_project 12 115267465 115267544 + Mir370 miRNA miRNA MGP_C57BL6NJ_T0035811.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510370 87522811 + MGP_C57BL6NJ_P0035811 Coq6 protein_coding protein_coding MGP_C57BL6NJ_T0035812.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510681 87522815 + MGP_C57BL6NJ_P0035812 Coq6 protein_coding protein_coding MGP_C57BL6NJ_T0035813.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510709 87522815 + Coq6 protein_coding retained_intron MGP_C57BL6NJ_T0035814.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510743 87522811 + MGP_C57BL6NJ_P0035814 Coq6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035815.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510752 87522811 + MGP_C57BL6NJ_P0035815 Coq6 protein_coding protein_coding MGP_C57BL6NJ_T0035816.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510754 87516123 + Coq6 protein_coding processed_transcript MGP_C57BL6NJ_T0035817.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510756 87522807 + Coq6 protein_coding retained_intron MGP_C57BL6NJ_T0035818.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87510777 87520050 + MGP_C57BL6NJ_P0035818 Coq6 protein_coding protein_coding MGP_C57BL6NJ_T0035819.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87517444 87521262 + Coq6 protein_coding processed_transcript MGP_C57BL6NJ_T0035820.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87517444 87522811 + Coq6 protein_coding processed_transcript MGP_C57BL6NJ_T0035821.1 MGP_C57BL6NJ_G0020322.1 mouse_genomes_project 12 87520020 87521184 + Coq6 protein_coding retained_intron MGP_C57BL6NJ_T0010062.1 MGP_C57BL6NJ_G0008147.1 mouse_genomes_project 12 115371360 115371436 + Mir543 miRNA miRNA MGP_C57BL6NJ_T0036200.1 MGP_C57BL6NJ_G0020438.1 mouse_genomes_project 12 108332348 108351479 + MGP_C57BL6NJ_P0036200 Otub2 protein_coding protein_coding MGP_C57BL6NJ_T0036201.1 MGP_C57BL6NJ_G0020438.1 mouse_genomes_project 12 108332364 108351485 + MGP_C57BL6NJ_P0036201 Otub2 protein_coding protein_coding MGP_C57BL6NJ_T0036202.1 MGP_C57BL6NJ_G0020438.1 mouse_genomes_project 12 108332432 108351485 + Otub2 protein_coding retained_intron MGP_C57BL6NJ_T0036203.1 MGP_C57BL6NJ_G0020438.1 mouse_genomes_project 12 108332651 108348041 + MGP_C57BL6NJ_P0036203 Otub2 protein_coding protein_coding MGP_C57BL6NJ_T0036204.1 MGP_C57BL6NJ_G0020438.1 mouse_genomes_project 12 108336320 108351490 + MGP_C57BL6NJ_P0036204 Otub2 protein_coding protein_coding MGP_C57BL6NJ_T0000009.1 MGP_C57BL6NJ_G0000006.1 mouse_genomes_project 12 119355334 119359081 - MGP_C57BL6NJ_P0000009 Ighg2b IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000010.1 MGP_C57BL6NJ_G0000006.1 mouse_genomes_project 12 119358654 119360303 - MGP_C57BL6NJ_P0000010 Ighg2b IG_C_gene IG_C_gene MGP_C57BL6NJ_T0035080.1 MGP_C57BL6NJ_G0020060.1 mouse_genomes_project 12 31108089 31144040 - MGP_C57BL6NJ_P0035080 Pik3cg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035081.1 MGP_C57BL6NJ_G0020060.1 mouse_genomes_project 12 31108786 31144088 - MGP_C57BL6NJ_P0035081 Pik3cg protein_coding protein_coding MGP_C57BL6NJ_T0035082.1 MGP_C57BL6NJ_G0020060.1 mouse_genomes_project 12 31110240 31143899 - MGP_C57BL6NJ_P0035082 Pik3cg protein_coding protein_coding MGP_C57BL6NJ_T0035083.1 MGP_C57BL6NJ_G0020060.1 mouse_genomes_project 12 31135979 31136438 - Pik3cg protein_coding retained_intron MGP_C57BL6NJ_T0034941.1 MGP_C57BL6NJ_G0020010.1 mouse_genomes_project 12 15269755 15357708 + MGP_C57BL6NJ_P0034941 Nol10 protein_coding protein_coding MGP_C57BL6NJ_T0035124.1 MGP_C57BL6NJ_G0020077.1 mouse_genomes_project 12 35164697 35169794 + Agr2 protein_coding retained_intron MGP_C57BL6NJ_T0035125.1 MGP_C57BL6NJ_G0020077.1 mouse_genomes_project 12 35164697 35176730 + MGP_C57BL6NJ_P0035125 Agr2 protein_coding protein_coding MGP_C57BL6NJ_T0003570.1 MGP_C57BL6NJ_G0003264.1 mouse_genomes_project 12 106995205 106997306 - Gm16339 antisense antisense MGP_C57BL6NJ_T0035004.1 MGP_C57BL6NJ_G0020033.1 mouse_genomes_project 12 27275251 27311914 - MGP_C57BL6NJ_P0035004 Colec11 protein_coding protein_coding MGP_C57BL6NJ_T0101151.1 MGP_C57BL6NJ_G0039197.1 mouse_genomes_project 12 115332604 115332679 + Gm23736 snoRNA snoRNA MGP_C57BL6NJ_T0000333.1 MGP_C57BL6NJ_G0000252.1 mouse_genomes_project 12 119806147 119806521 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0006633.1 MGP_C57BL6NJ_G0005522.1 mouse_genomes_project 12 112550074 112553254 + Gm2800 lincRNA lincRNA MGP_C57BL6NJ_T0006632.1 MGP_C57BL6NJ_G0005521.1 mouse_genomes_project 12 112510714 112526511 - Gm16084 lincRNA lincRNA MGP_C57BL6NJ_T0013134.1 MGP_C57BL6NJ_G0011179.1 mouse_genomes_project 12 87391279 87391921 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013143.1 MGP_C57BL6NJ_G0011188.1 mouse_genomes_project 12 105521820 105522291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000984.1 MGP_C57BL6NJ_G0000894.1 mouse_genomes_project 12 8703671 8704421 - TEC TEC MGP_C57BL6NJ_T0000166.1 MGP_C57BL6NJ_G0000124.1 mouse_genomes_project 12 121965574 121967673 - MGP_C57BL6NJ_P0000166 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036178.1 MGP_C57BL6NJ_G0020433.1 mouse_genomes_project 12 107808095 107809324 + MGP_C57BL6NJ_P0036178 Cox8c protein_coding protein_coding MGP_C57BL6NJ_T0036263.1 MGP_C57BL6NJ_G0020467.1 mouse_genomes_project 12 109987772 109993943 + MGP_C57BL6NJ_P0036263 4930408O17Rik protein_coding protein_coding MGP_C57BL6NJ_T0006628.1 MGP_C57BL6NJ_G0005517.1 mouse_genomes_project 12 112183782 112225398 + 1700013N06Rik lincRNA lincRNA MGP_C57BL6NJ_T0036311.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113572037 113650643 - MGP_C57BL6NJ_P0036311 protein_coding protein_coding MGP_C57BL6NJ_T0036312.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113573183 113582778 - protein_coding retained_intron MGP_C57BL6NJ_T0036313.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113579960 113582914 - protein_coding processed_transcript MGP_C57BL6NJ_T0036314.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113584605 113650545 - MGP_C57BL6NJ_P0036314 protein_coding protein_coding MGP_C57BL6NJ_T0036315.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113584864 113650592 - MGP_C57BL6NJ_P0036315 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036316.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113586181 113633256 - protein_coding processed_transcript MGP_C57BL6NJ_T0036317.1 MGP_C57BL6NJ_G0020485.1 mouse_genomes_project 12 113628109 113650542 - MGP_C57BL6NJ_P0036317 protein_coding protein_coding MGP_C57BL6NJ_T0034839.1 MGP_C57BL6NJ_G0019975.1 mouse_genomes_project 12 5492057 5522467 + MGP_C57BL6NJ_P0034839 Hs1bp3 protein_coding protein_coding MGP_C57BL6NJ_T0036269.1 MGP_C57BL6NJ_G0020471.1 mouse_genomes_project 12 110289390 110330912 + MGP_C57BL6NJ_P0036269 Tcl1b3 protein_coding protein_coding MGP_C57BL6NJ_T0035895.1 MGP_C57BL6NJ_G0020349.1 mouse_genomes_project 12 88741460 88744847 + MGP_C57BL6NJ_P0035895 Fos protein_coding protein_coding MGP_C57BL6NJ_T0035896.1 MGP_C57BL6NJ_G0020349.1 mouse_genomes_project 12 88742261 88743581 + Fos protein_coding processed_transcript MGP_C57BL6NJ_T0035897.1 MGP_C57BL6NJ_G0020349.1 mouse_genomes_project 12 88742261 88743759 + Fos protein_coding processed_transcript MGP_C57BL6NJ_T0035898.1 MGP_C57BL6NJ_G0020349.1 mouse_genomes_project 12 88742481 88743637 + Fos protein_coding processed_transcript MGP_C57BL6NJ_T0036075.1 MGP_C57BL6NJ_G0020399.1 mouse_genomes_project 12 103237316 103370541 - MGP_C57BL6NJ_P0036075 Eml5 protein_coding protein_coding MGP_C57BL6NJ_T0036076.1 MGP_C57BL6NJ_G0020399.1 mouse_genomes_project 12 103246212 103370113 - MGP_C57BL6NJ_P0036076 Eml5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010012.1 MGP_C57BL6NJ_G0008097.1 mouse_genomes_project 12 93023173 93023315 - Gm27313 miRNA miRNA MGP_C57BL6NJ_T0009982.1 MGP_C57BL6NJ_G0008067.1 mouse_genomes_project 12 27372321 27372386 + Mir6937 miRNA miRNA MGP_C57BL6NJ_T0035473.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74171421 74182744 + MGP_C57BL6NJ_P0035473 Jkamp protein_coding protein_coding MGP_C57BL6NJ_T0035474.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74171621 74181892 + Jkamp protein_coding processed_transcript MGP_C57BL6NJ_T0035475.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74171689 74189414 + MGP_C57BL6NJ_P0035475 Jkamp protein_coding protein_coding MGP_C57BL6NJ_T0035476.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74171689 74190014 + MGP_C57BL6NJ_P0035476 Jkamp protein_coding protein_coding MGP_C57BL6NJ_T0035477.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74177040 74182744 + Jkamp protein_coding retained_intron MGP_C57BL6NJ_T0035478.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74177581 74182618 + Jkamp protein_coding retained_intron MGP_C57BL6NJ_T0035479.1 MGP_C57BL6NJ_G0020212.1 mouse_genomes_project 12 74188329 74189410 + Jkamp protein_coding retained_intron MGP_C57BL6NJ_T0017780.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115252091 115255742 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017781.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115252096 115294778 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017782.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115252197 115276468 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017783.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115269534 115295798 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017784.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115269534 115283489 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017785.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115274446 115294844 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017786.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115282006 115285530 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017787.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115283215 115292721 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017788.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115283459 115295721 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017789.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115293198 115294825 + Rian processed_transcript TEC MGP_C57BL6NJ_T0017790.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115295523 115313329 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017791.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115295544 115305555 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017792.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115296095 115310336 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017793.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115299716 115300897 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017794.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115300614 115306415 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017795.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115301226 115312638 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017796.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115301230 115306436 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017797.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115301558 115310282 + Rian processed_transcript lincRNA MGP_C57BL6NJ_T0017798.1 MGP_C57BL6NJ_G0015634.1 mouse_genomes_project 12 115307833 115309659 + Rian processed_transcript TEC MGP_C57BL6NJ_T0035422.1 MGP_C57BL6NJ_G0020195.1 mouse_genomes_project 12 71917728 71939906 - MGP_C57BL6NJ_P0035422 Sav1 protein_coding protein_coding MGP_C57BL6NJ_T0036547.1 MGP_C57BL6NJ_G0020561.1 mouse_genomes_project 12 119227218 119230812 + MGP_C57BL6NJ_P0036547 Tmem121 protein_coding protein_coding MGP_C57BL6NJ_T0036483.1 MGP_C57BL6NJ_G0020536.1 mouse_genomes_project 12 118406979 118418754 - MGP_C57BL6NJ_P0036483 A730018C14Rik protein_coding protein_coding MGP_C57BL6NJ_T0010029.1 MGP_C57BL6NJ_G0008114.1 mouse_genomes_project 12 115228349 115228432 + Mir493 miRNA miRNA MGP_C57BL6NJ_T0035421.1 MGP_C57BL6NJ_G0020194.1 mouse_genomes_project 12 71916189 71922767 + MGP_C57BL6NJ_P0035421 Gm3086 protein_coding protein_coding MGP_C57BL6NJ_T0013108.1 MGP_C57BL6NJ_G0011153.1 mouse_genomes_project 12 51647569 51648043 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035968.1 MGP_C57BL6NJ_G0020369.1 mouse_genomes_project 12 90591043 90630303 - MGP_C57BL6NJ_P0035968 Tmed8 protein_coding protein_coding MGP_C57BL6NJ_T0035016.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28704680 28790000 + MGP_C57BL6NJ_P0035016 Pxdn protein_coding protein_coding MGP_C57BL6NJ_T0035017.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28704694 28759754 + Pxdn protein_coding retained_intron MGP_C57BL6NJ_T0035018.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28704694 28759202 + MGP_C57BL6NJ_P0035018 Pxdn protein_coding protein_coding MGP_C57BL6NJ_T0035019.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28766645 28772538 + Pxdn protein_coding processed_transcript MGP_C57BL6NJ_T0035020.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28766651 28769994 + Pxdn protein_coding retained_intron MGP_C57BL6NJ_T0035021.1 MGP_C57BL6NJ_G0020040.1 mouse_genomes_project 12 28770022 28772680 + Pxdn protein_coding retained_intron MGP_C57BL6NJ_T0099810.1 MGP_C57BL6NJ_G0037856.1 mouse_genomes_project 12 1699188 1699295 + Gm22003 snRNA snRNA MGP_C57BL6NJ_T0099839.1 MGP_C57BL6NJ_G0037885.1 mouse_genomes_project 12 69357677 69357863 + Gm26256 snRNA snRNA MGP_C57BL6NJ_T0000118.1 MGP_C57BL6NJ_G0000091.1 mouse_genomes_project 12 120626785 120627087 - MGP_C57BL6NJ_P0000118 Ighv13-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000119.1 MGP_C57BL6NJ_G0000091.1 mouse_genomes_project 12 120626785 120627245 - MGP_C57BL6NJ_P0000119 Ighv13-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010042.1 MGP_C57BL6NJ_G0008127.1 mouse_genomes_project 12 115243266 115243328 + Mir136 miRNA miRNA MGP_C57BL6NJ_T0035543.1 MGP_C57BL6NJ_G0020237.1 mouse_genomes_project 12 77830275 77989655 - MGP_C57BL6NJ_P0035543 Ppp2r5e protein_coding protein_coding MGP_C57BL6NJ_T0101116.1 MGP_C57BL6NJ_G0039162.1 mouse_genomes_project 12 60639249 60639380 + Gm22673 snoRNA snoRNA MGP_C57BL6NJ_T0035480.1 MGP_C57BL6NJ_G0020213.1 mouse_genomes_project 12 74189844 74281441 - MGP_C57BL6NJ_P0035480 Ccdc175 protein_coding protein_coding MGP_C57BL6NJ_T0099824.1 MGP_C57BL6NJ_G0037870.1 mouse_genomes_project 12 53033333 53033440 - Gm23296 snRNA snRNA MGP_C57BL6NJ_T0035656.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745564 83750568 + MGP_C57BL6NJ_P0035656 Srsf5 protein_coding protein_coding MGP_C57BL6NJ_T0035657.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745580 83750564 + Srsf5 protein_coding retained_intron MGP_C57BL6NJ_T0035658.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745580 83750564 + MGP_C57BL6NJ_P0035658 Srsf5 protein_coding protein_coding MGP_C57BL6NJ_T0035659.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745592 83750564 + Srsf5 protein_coding retained_intron MGP_C57BL6NJ_T0035660.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745592 83750564 + MGP_C57BL6NJ_P0035660 Srsf5 protein_coding protein_coding MGP_C57BL6NJ_T0035661.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745592 83750564 + MGP_C57BL6NJ_P0035661 Srsf5 protein_coding protein_coding MGP_C57BL6NJ_T0035662.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745594 83746909 + Srsf5 protein_coding processed_transcript MGP_C57BL6NJ_T0035663.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745608 83748565 + Srsf5 protein_coding processed_transcript MGP_C57BL6NJ_T0035664.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745630 83747589 + MGP_C57BL6NJ_P0035664 Srsf5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035665.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745639 83747031 + Srsf5 protein_coding processed_transcript MGP_C57BL6NJ_T0035666.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83745645 83750564 + MGP_C57BL6NJ_P0035666 Srsf5 protein_coding protein_coding MGP_C57BL6NJ_T0035667.1 MGP_C57BL6NJ_G0020284.1 mouse_genomes_project 12 83746436 83750558 + Srsf5 protein_coding retained_intron MGP_C57BL6NJ_T0035197.1 MGP_C57BL6NJ_G0020102.1 mouse_genomes_project 12 44702337 44934410 - MGP_C57BL6NJ_P0035197 Stxbp6 protein_coding protein_coding MGP_C57BL6NJ_T0035198.1 MGP_C57BL6NJ_G0020102.1 mouse_genomes_project 12 44705070 44934791 - MGP_C57BL6NJ_P0035198 Stxbp6 protein_coding protein_coding MGP_C57BL6NJ_T0035199.1 MGP_C57BL6NJ_G0020102.1 mouse_genomes_project 12 44711128 44869582 - Stxbp6 protein_coding processed_transcript MGP_C57BL6NJ_T0035200.1 MGP_C57BL6NJ_G0020102.1 mouse_genomes_project 12 44752675 44934452 - MGP_C57BL6NJ_P0035200 Stxbp6 protein_coding protein_coding MGP_C57BL6NJ_T0035201.1 MGP_C57BL6NJ_G0020102.1 mouse_genomes_project 12 44869549 44934616 - MGP_C57BL6NJ_P0035201 Stxbp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0009978.1 MGP_C57BL6NJ_G0008063.1 mouse_genomes_project 12 13619077 13619185 - Mir6387 miRNA miRNA MGP_C57BL6NJ_T0035625.1 MGP_C57BL6NJ_G0020269.1 mouse_genomes_project 12 81780729 81801921 - MGP_C57BL6NJ_P0035625 Vti1b protein_coding protein_coding MGP_C57BL6NJ_T0035626.1 MGP_C57BL6NJ_G0020269.1 mouse_genomes_project 12 81780882 81801702 - MGP_C57BL6NJ_P0035626 Vti1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035627.1 MGP_C57BL6NJ_G0020269.1 mouse_genomes_project 12 81781041 81794403 - MGP_C57BL6NJ_P0035627 Vti1b protein_coding protein_coding MGP_C57BL6NJ_T0035628.1 MGP_C57BL6NJ_G0020269.1 mouse_genomes_project 12 81781229 81795632 - MGP_C57BL6NJ_P0035628 Vti1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035486.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553540 74623932 + MGP_C57BL6NJ_P0035486 Lrrc9 protein_coding protein_coding MGP_C57BL6NJ_T0035487.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553607 74610626 + MGP_C57BL6NJ_P0035487 Lrrc9 protein_coding protein_coding MGP_C57BL6NJ_T0035488.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553623 74579994 + Lrrc9 protein_coding retained_intron MGP_C57BL6NJ_T0035489.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553709 74627701 + Lrrc9 protein_coding processed_transcript MGP_C57BL6NJ_T0035490.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553916 74566418 + Lrrc9 protein_coding retained_intron MGP_C57BL6NJ_T0035491.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74553923 74586702 + Lrrc9 protein_coding retained_intron MGP_C57BL6NJ_T0035492.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74561004 74625750 + MGP_C57BL6NJ_P0035492 Lrrc9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035493.1 MGP_C57BL6NJ_G0020215.1 mouse_genomes_project 12 74588565 74590153 + Lrrc9 protein_coding retained_intron MGP_C57BL6NJ_T0035022.1 MGP_C57BL6NJ_G0020041.1 mouse_genomes_project 12 28829738 28915087 - MGP_C57BL6NJ_P0035022 Tpo protein_coding protein_coding MGP_C57BL6NJ_T0035023.1 MGP_C57BL6NJ_G0020041.1 mouse_genomes_project 12 28869209 28872085 - Tpo protein_coding retained_intron MGP_C57BL6NJ_T0035024.1 MGP_C57BL6NJ_G0020041.1 mouse_genomes_project 12 28895827 28914362 - MGP_C57BL6NJ_P0035024 Tpo protein_coding protein_coding MGP_C57BL6NJ_T0034916.1 MGP_C57BL6NJ_G0020004.1 mouse_genomes_project 12 14775490 14882280 + MGP_C57BL6NJ_P0034916 Rock2 protein_coding protein_coding MGP_C57BL6NJ_T0010047.1 MGP_C57BL6NJ_G0008132.1 mouse_genomes_project 12 115334001 115334078 + Mir882 miRNA miRNA MGP_C57BL6NJ_T0036585.1 MGP_C57BL6NJ_G0020576.1 mouse_genomes_project 12 125962163 126047612 - MGP_C57BL6NJ_P0036585 Itgb8 protein_coding protein_coding MGP_C57BL6NJ_T0036586.1 MGP_C57BL6NJ_G0020576.1 mouse_genomes_project 12 125993588 126047611 - Itgb8 protein_coding retained_intron MGP_C57BL6NJ_T0036587.1 MGP_C57BL6NJ_G0020576.1 mouse_genomes_project 12 126006829 126047580 - Itgb8 protein_coding retained_intron MGP_C57BL6NJ_T0035569.1 MGP_C57BL6NJ_G0020243.1 mouse_genomes_project 12 78697869 78768187 + MGP_C57BL6NJ_P0035569 Mthfd1 protein_coding protein_coding MGP_C57BL6NJ_T0011599.1 MGP_C57BL6NJ_G0009684.1 mouse_genomes_project 12 115182533 115182616 + Gm27596 misc_RNA misc_RNA MGP_C57BL6NJ_T0000373.1 MGP_C57BL6NJ_G0000292.1 mouse_genomes_project 12 121319174 121319608 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0010010.1 MGP_C57BL6NJ_G0008095.1 mouse_genomes_project 12 90708954 90709030 + miRNA miRNA MGP_C57BL6NJ_T0036571.1 MGP_C57BL6NJ_G0020570.1 mouse_genomes_project 12 124212642 124465636 + MGP_C57BL6NJ_P0036571 Rapgef5 protein_coding protein_coding MGP_C57BL6NJ_T0036572.1 MGP_C57BL6NJ_G0020570.1 mouse_genomes_project 12 124231360 124468400 + MGP_C57BL6NJ_P0036572 Rapgef5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000184.1 MGP_C57BL6NJ_G0000137.1 mouse_genomes_project 12 122406973 122407267 - MGP_C57BL6NJ_P0000184 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000185.1 MGP_C57BL6NJ_G0000137.1 mouse_genomes_project 12 122406973 122407462 - MGP_C57BL6NJ_P0000185 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000094.1 MGP_C57BL6NJ_G0000075.1 mouse_genomes_project 12 120206517 120207089 - MGP_C57BL6NJ_P0000094 Ighv11-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0006629.1 MGP_C57BL6NJ_G0005518.1 mouse_genomes_project 12 112306359 112309911 - lincRNA lincRNA MGP_C57BL6NJ_T0006614.1 MGP_C57BL6NJ_G0005507.1 mouse_genomes_project 12 104815776 104816603 - Gm26723 lincRNA lincRNA MGP_C57BL6NJ_T0101111.1 MGP_C57BL6NJ_G0039157.1 mouse_genomes_project 12 51400054 51400171 + Gm22088 snoRNA snoRNA MGP_C57BL6NJ_T0035290.1 MGP_C57BL6NJ_G0020149.1 mouse_genomes_project 12 57500826 58018135 - MGP_C57BL6NJ_P0035290 Slc25a21 protein_coding protein_coding MGP_C57BL6NJ_T0035291.1 MGP_C57BL6NJ_G0020149.1 mouse_genomes_project 12 57502005 57979643 - MGP_C57BL6NJ_P0035291 Slc25a21 protein_coding protein_coding MGP_C57BL6NJ_T0035292.1 MGP_C57BL6NJ_G0020149.1 mouse_genomes_project 12 57517912 57563397 - Slc25a21 protein_coding processed_transcript MGP_C57BL6NJ_T0035293.1 MGP_C57BL6NJ_G0020149.1 mouse_genomes_project 12 57561548 57787009 - Slc25a21 protein_coding retained_intron MGP_C57BL6NJ_T0036083.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103698308 103912367 - MGP_C57BL6NJ_P0036083 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036084.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103698422 103911642 - MGP_C57BL6NJ_P0036084 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036085.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103698422 103982645 - MGP_C57BL6NJ_P0036085 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036086.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103700115 103799381 - MGP_C57BL6NJ_P0036086 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036087.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103712832 103799380 - MGP_C57BL6NJ_P0036087 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036088.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103799366 103869622 - Foxn3 protein_coding processed_transcript MGP_C57BL6NJ_T0036089.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103852488 103936651 - MGP_C57BL6NJ_P0036089 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036090.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103903662 103982668 - Foxn3 protein_coding retained_intron MGP_C57BL6NJ_T0036091.1 MGP_C57BL6NJ_G0020401.1 mouse_genomes_project 12 103904696 103982682 - MGP_C57BL6NJ_P0036091 Foxn3 protein_coding protein_coding MGP_C57BL6NJ_T0101153.1 MGP_C57BL6NJ_G0039199.1 mouse_genomes_project 12 115334188 115334263 + Gm22981 snoRNA snoRNA MGP_C57BL6NJ_T0034956.1 MGP_C57BL6NJ_G0020016.1 mouse_genomes_project 12 19570975 19578189 + MGP_C57BL6NJ_P0034956 Iah1 protein_coding protein_coding MGP_C57BL6NJ_T0011586.1 MGP_C57BL6NJ_G0009671.1 mouse_genomes_project 12 63043579 63043892 + Gm23213 misc_RNA misc_RNA MGP_C57BL6NJ_T0036121.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105536033 105568649 - MGP_C57BL6NJ_P0036121 Gpr68 protein_coding protein_coding MGP_C57BL6NJ_T0036122.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105536036 105568632 - MGP_C57BL6NJ_P0036122 Gpr68 protein_coding protein_coding MGP_C57BL6NJ_T0036123.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105536036 105559928 - MGP_C57BL6NJ_P0036123 Gpr68 protein_coding protein_coding MGP_C57BL6NJ_T0036124.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105538665 105559902 - Gpr68 protein_coding processed_transcript MGP_C57BL6NJ_T0036126.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105546995 105568649 - Gpr68 protein_coding processed_transcript MGP_C57BL6NJ_T0036127.1 MGP_C57BL6NJ_G0020411.1 mouse_genomes_project 12 105547183 105559928 - Gpr68 protein_coding processed_transcript MGP_C57BL6NJ_T0035878.1 MGP_C57BL6NJ_G0020342.1 mouse_genomes_project 12 88406880 88416442 - MGP_C57BL6NJ_P0035878 Pgf protein_coding protein_coding MGP_C57BL6NJ_T0006557.1 MGP_C57BL6NJ_G0005461.1 mouse_genomes_project 12 6134969 6139242 - 9930038B18Rik lincRNA lincRNA MGP_C57BL6NJ_T0035738.1 MGP_C57BL6NJ_G0020302.1 mouse_genomes_project 12 86557042 86581555 + MGP_C57BL6NJ_P0035738 Dcaf4 protein_coding protein_coding MGP_C57BL6NJ_T0035623.1 MGP_C57BL6NJ_G0020267.1 mouse_genomes_project 12 81709434 81718359 - MGP_C57BL6NJ_P0035623 Pigh protein_coding protein_coding MGP_C57BL6NJ_T0000988.1 MGP_C57BL6NJ_G0000898.1 mouse_genomes_project 12 57377089 57377953 - TEC TEC MGP_C57BL6NJ_T0098813.1 MGP_C57BL6NJ_G0036877.1 mouse_genomes_project 12 51457117 51459700 - pseudogene pseudogene MGP_C57BL6NJ_T0035241.1 MGP_C57BL6NJ_G0020124.1 mouse_genomes_project 12 55234674 55247219 - MGP_C57BL6NJ_P0035241 Sptssa protein_coding protein_coding MGP_C57BL6NJ_T0035763.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86862698 86999289 - MGP_C57BL6NJ_P0035763 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035764.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86862700 86952285 - MGP_C57BL6NJ_P0035764 Numb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035765.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86862735 86999199 - MGP_C57BL6NJ_P0035765 Numb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035766.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86864103 86914948 - MGP_C57BL6NJ_P0035766 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035767.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86864103 86914948 - MGP_C57BL6NJ_P0035767 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035768.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86864103 86914948 - MGP_C57BL6NJ_P0035768 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035769.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86872602 86999222 - MGP_C57BL6NJ_P0035769 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035770.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86876762 86999211 - MGP_C57BL6NJ_P0035770 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035771.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86876833 86999238 - MGP_C57BL6NJ_P0035771 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035772.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86879833 86999245 - MGP_C57BL6NJ_P0035772 Numb protein_coding protein_coding MGP_C57BL6NJ_T0035773.1 MGP_C57BL6NJ_G0020307.1 mouse_genomes_project 12 86903525 86952273 - Numb protein_coding retained_intron MGP_C57BL6NJ_T0036001.1 MGP_C57BL6NJ_G0020379.1 mouse_genomes_project 12 91609134 91727088 + MGP_C57BL6NJ_P0036001 protein_coding protein_coding MGP_C57BL6NJ_T0034883.1 MGP_C57BL6NJ_G0019988.1 mouse_genomes_project 12 8690602 8691169 - MGP_C57BL6NJ_P0034883 Msgn1 protein_coding protein_coding MGP_C57BL6NJ_T0035947.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363263 90378884 + MGP_C57BL6NJ_P0035947 Cipc protein_coding protein_coding MGP_C57BL6NJ_T0035948.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363263 90380024 + MGP_C57BL6NJ_P0035948 Cipc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035949.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363319 90378184 + MGP_C57BL6NJ_P0035949 Cipc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035950.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363563 90381579 + MGP_C57BL6NJ_P0035950 Cipc protein_coding protein_coding MGP_C57BL6NJ_T0035951.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363616 90369386 + Cipc protein_coding retained_intron MGP_C57BL6NJ_T0035952.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363638 90376608 + MGP_C57BL6NJ_P0035952 Cipc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035953.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363674 90376607 + MGP_C57BL6NJ_P0035953 Cipc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035954.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363686 90376524 + MGP_C57BL6NJ_P0035954 Cipc protein_coding protein_coding MGP_C57BL6NJ_T0035955.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90363710 90378100 + MGP_C57BL6NJ_P0035955 Cipc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035956.1 MGP_C57BL6NJ_G0020363.1 mouse_genomes_project 12 90368877 90379050 + MGP_C57BL6NJ_P0035956 Cipc protein_coding protein_coding MGP_C57BL6NJ_T0036386.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116532980 116669799 + MGP_C57BL6NJ_P0036386 protein_coding protein_coding MGP_C57BL6NJ_T0036387.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116589427 116652698 + MGP_C57BL6NJ_P0036387 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036388.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116589436 116591688 + protein_coding retained_intron MGP_C57BL6NJ_T0036389.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116589439 116658611 + MGP_C57BL6NJ_P0036389 protein_coding protein_coding MGP_C57BL6NJ_T0036390.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116589465 116593696 + protein_coding processed_transcript MGP_C57BL6NJ_T0036391.1 MGP_C57BL6NJ_G0020506.1 mouse_genomes_project 12 116589656 116652870 + MGP_C57BL6NJ_P0036391 protein_coding protein_coding MGP_C57BL6NJ_T0035622.1 MGP_C57BL6NJ_G0020266.1 mouse_genomes_project 12 81657173 81710410 + MGP_C57BL6NJ_P0035622 Plekhh1 protein_coding protein_coding MGP_C57BL6NJ_T0010020.1 MGP_C57BL6NJ_G0008105.1 mouse_genomes_project 12 107904167 107904302 + Gm44324 miRNA miRNA MGP_C57BL6NJ_T0036516.1 MGP_C57BL6NJ_G0020551.1 mouse_genomes_project 12 118970173 118974763 - MGP_C57BL6NJ_P0036516 Nudt14 protein_coding protein_coding MGP_C57BL6NJ_T0034866.1 MGP_C57BL6NJ_G0019981.1 mouse_genomes_project 12 6222343 6246518 + MGP_C57BL6NJ_P0034866 Matn3 protein_coding protein_coding MGP_C57BL6NJ_T0036230.1 MGP_C57BL6NJ_G0020448.1 mouse_genomes_project 12 108654885 108661508 - MGP_C57BL6NJ_P0036230 Serpina1f protein_coding protein_coding MGP_C57BL6NJ_T0036231.1 MGP_C57BL6NJ_G0020448.1 mouse_genomes_project 12 108656474 108662371 - MGP_C57BL6NJ_P0036231 Serpina1f protein_coding protein_coding MGP_C57BL6NJ_T0036232.1 MGP_C57BL6NJ_G0020448.1 mouse_genomes_project 12 108656477 108661558 - MGP_C57BL6NJ_P0036232 Serpina1f protein_coding protein_coding MGP_C57BL6NJ_T0000355.1 MGP_C57BL6NJ_G0000274.1 mouse_genomes_project 12 120748955 120749416 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0010065.1 MGP_C57BL6NJ_G0008150.1 mouse_genomes_project 12 115376878 115376964 + Mir376c miRNA miRNA MGP_C57BL6NJ_T0101102.1 MGP_C57BL6NJ_G0039148.1 mouse_genomes_project 12 33995139 33995271 + Gm24429 snoRNA snoRNA MGP_C57BL6NJ_T0009999.1 MGP_C57BL6NJ_G0008084.1 mouse_genomes_project 12 71469596 71469705 - Gm23018 miRNA miRNA MGP_C57BL6NJ_T0036165.1 MGP_C57BL6NJ_G0020425.1 mouse_genomes_project 12 107452568 107594619 - MGP_C57BL6NJ_P0036165 Itpk1 protein_coding protein_coding MGP_C57BL6NJ_T0036166.1 MGP_C57BL6NJ_G0020425.1 mouse_genomes_project 12 107468274 107478004 - Itpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0036167.1 MGP_C57BL6NJ_G0020425.1 mouse_genomes_project 12 107471864 107525927 - MGP_C57BL6NJ_P0036167 Itpk1 protein_coding protein_coding MGP_C57BL6NJ_T0036168.1 MGP_C57BL6NJ_G0020425.1 mouse_genomes_project 12 107507298 107594717 - MGP_C57BL6NJ_P0036168 Itpk1 protein_coding protein_coding MGP_C57BL6NJ_T0036399.1 MGP_C57BL6NJ_G0020510.1 mouse_genomes_project 12 116761112 116849209 + MGP_C57BL6NJ_P0036399 Tecpr2 protein_coding protein_coding MGP_C57BL6NJ_T0036400.1 MGP_C57BL6NJ_G0020510.1 mouse_genomes_project 12 116761112 116849211 + MGP_C57BL6NJ_P0036400 Tecpr2 protein_coding protein_coding MGP_C57BL6NJ_T0034818.1 MGP_C57BL6NJ_G0019967.1 mouse_genomes_project 12 1800197 1811713 + MGP_C57BL6NJ_P0034818 BC068281 protein_coding protein_coding MGP_C57BL6NJ_T0034819.1 MGP_C57BL6NJ_G0019967.1 mouse_genomes_project 12 1808945 1820090 + MGP_C57BL6NJ_P0034819 BC068281 protein_coding protein_coding MGP_C57BL6NJ_T0010084.1 MGP_C57BL6NJ_G0008169.1 mouse_genomes_project 12 115394850 115394918 + Mir377 miRNA miRNA MGP_C57BL6NJ_T0000339.1 MGP_C57BL6NJ_G0000258.1 mouse_genomes_project 12 119985338 119985650 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0102776.1 MGP_C57BL6NJ_G0040571.1 mouse_genomes_project 12 78029541 78037019 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102777.1 MGP_C57BL6NJ_G0040571.1 mouse_genomes_project 12 78030263 78037042 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0017766.1 MGP_C57BL6NJ_G0015623.1 mouse_genomes_project 12 45321901 45326419 + Gm9921 processed_transcript processed_transcript MGP_C57BL6NJ_T0035709.1 MGP_C57BL6NJ_G0020299.1 mouse_genomes_project 12 85445487 85446606 - MGP_C57BL6NJ_P0035709 Gm5435 protein_coding protein_coding MGP_C57BL6NJ_T0006619.1 MGP_C57BL6NJ_G0005512.1 mouse_genomes_project 12 110528406 110577489 + lincRNA lincRNA MGP_C57BL6NJ_T0006620.1 MGP_C57BL6NJ_G0005512.1 mouse_genomes_project 12 110528805 110577487 + lincRNA lincRNA MGP_C57BL6NJ_T0035280.1 MGP_C57BL6NJ_G0020143.1 mouse_genomes_project 12 56295119 56531858 - MGP_C57BL6NJ_P0035280 Ralgapa1 protein_coding protein_coding MGP_C57BL6NJ_T0035281.1 MGP_C57BL6NJ_G0020143.1 mouse_genomes_project 12 56306678 56531458 - MGP_C57BL6NJ_P0035281 Ralgapa1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000091.1 MGP_C57BL6NJ_G0000072.1 mouse_genomes_project 12 120148885 120224046 - MGP_C57BL6NJ_P0000091 Ighv4-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034998.1 MGP_C57BL6NJ_G0020031.1 mouse_genomes_project 12 27175038 27181196 - protein_coding processed_transcript MGP_C57BL6NJ_T0034999.1 MGP_C57BL6NJ_G0020031.1 mouse_genomes_project 12 27180537 27190288 - protein_coding processed_transcript MGP_C57BL6NJ_T0035000.1 MGP_C57BL6NJ_G0020031.1 mouse_genomes_project 12 27180765 27220269 - MGP_C57BL6NJ_P0035000 protein_coding protein_coding MGP_C57BL6NJ_T0036305.1 MGP_C57BL6NJ_G0020482.1 mouse_genomes_project 12 111263091 111333111 + MGP_C57BL6NJ_P0036305 Vrk1 protein_coding protein_coding MGP_C57BL6NJ_T0036306.1 MGP_C57BL6NJ_G0020482.1 mouse_genomes_project 12 111264090 111335483 + MGP_C57BL6NJ_P0036306 Vrk1 protein_coding protein_coding MGP_C57BL6NJ_T0036271.1 MGP_C57BL6NJ_G0020473.1 mouse_genomes_project 12 110326430 110330912 + MGP_C57BL6NJ_P0036271 Tcl1b5 protein_coding protein_coding MGP_C57BL6NJ_T0035853.1 MGP_C57BL6NJ_G0020335.1 mouse_genomes_project 12 88084989 88087353 + MGP_C57BL6NJ_P0035853 D030025P21Rik protein_coding protein_coding MGP_C57BL6NJ_T0035131.1 MGP_C57BL6NJ_G0020081.1 mouse_genomes_project 12 35343152 35386616 + MGP_C57BL6NJ_P0035131 Ankmy2 protein_coding protein_coding MGP_C57BL6NJ_T0036279.1 MGP_C57BL6NJ_G0020476.1 mouse_genomes_project 12 110754207 110785932 + MGP_C57BL6NJ_P0036279 Bdkrb2 protein_coding protein_coding MGP_C57BL6NJ_T0035616.1 MGP_C57BL6NJ_G0020261.1 mouse_genomes_project 12 81351642 81445959 + MGP_C57BL6NJ_P0035616 Mpp5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000128.1 MGP_C57BL6NJ_G0000098.1 mouse_genomes_project 12 120742167 120742607 - MGP_C57BL6NJ_P0000128 Ighv8-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000371.1 MGP_C57BL6NJ_G0000290.1 mouse_genomes_project 12 121277109 121277521 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0098990.1 MGP_C57BL6NJ_G0037054.1 mouse_genomes_project 12 109179483 109179591 + Gm23289 rRNA rRNA MGP_C57BL6NJ_T0035423.1 MGP_C57BL6NJ_G0020196.1 mouse_genomes_project 12 71965477 72057327 - MGP_C57BL6NJ_P0035423 Nin protein_coding protein_coding MGP_C57BL6NJ_T0035424.1 MGP_C57BL6NJ_G0020196.1 mouse_genomes_project 12 71972781 72057348 - MGP_C57BL6NJ_P0035424 Nin protein_coding protein_coding MGP_C57BL6NJ_T0035425.1 MGP_C57BL6NJ_G0020196.1 mouse_genomes_project 12 71972782 72066404 - MGP_C57BL6NJ_P0035425 Nin protein_coding protein_coding MGP_C57BL6NJ_T0035426.1 MGP_C57BL6NJ_G0020196.1 mouse_genomes_project 12 71972802 72066399 - MGP_C57BL6NJ_P0035426 Nin protein_coding protein_coding MGP_C57BL6NJ_T0013110.1 MGP_C57BL6NJ_G0011155.1 mouse_genomes_project 12 55578974 55580111 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036398.1 MGP_C57BL6NJ_G0020509.1 mouse_genomes_project 12 116743764 116760994 - MGP_C57BL6NJ_P0036398 Cinp protein_coding protein_coding MGP_C57BL6NJ_T0099821.1 MGP_C57BL6NJ_G0037867.1 mouse_genomes_project 12 49162948 49163055 + Gm26454 snRNA snRNA MGP_C57BL6NJ_T0006556.1 MGP_C57BL6NJ_G0005460.1 mouse_genomes_project 12 6014371 6021850 - Gm4755 lincRNA lincRNA MGP_C57BL6NJ_T0006559.1 MGP_C57BL6NJ_G0005463.1 mouse_genomes_project 12 8934254 8940838 + 4930511A02Rik lincRNA lincRNA MGP_C57BL6NJ_T0035177.1 MGP_C57BL6NJ_G0020094.1 mouse_genomes_project 12 39800504 39802985 + MGP_C57BL6NJ_P0035177 Gm7008 protein_coding protein_coding MGP_C57BL6NJ_T0035178.1 MGP_C57BL6NJ_G0020094.1 mouse_genomes_project 12 39801110 39806931 + MGP_C57BL6NJ_P0035178 Gm7008 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035179.1 MGP_C57BL6NJ_G0020094.1 mouse_genomes_project 12 39801175 39806916 + MGP_C57BL6NJ_P0035179 Gm7008 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013128.1 MGP_C57BL6NJ_G0011173.1 mouse_genomes_project 12 81797749 81798097 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000175.1 MGP_C57BL6NJ_G0000131.1 mouse_genomes_project 12 122256126 122256569 - MGP_C57BL6NJ_P0000175 Ighv1-71 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000176.1 MGP_C57BL6NJ_G0000131.1 mouse_genomes_project 12 122256126 122256428 - MGP_C57BL6NJ_P0000176 Ighv1-71 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010040.1 MGP_C57BL6NJ_G0008125.1 mouse_genomes_project 12 115242895 115242970 + Mir432 miRNA miRNA MGP_C57BL6NJ_T0013157.1 MGP_C57BL6NJ_G0011202.1 mouse_genomes_project 12 113963630 113964371 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011598.1 MGP_C57BL6NJ_G0009683.1 mouse_genomes_project 12 115168267 115168472 + Gm27528 misc_RNA misc_RNA MGP_C57BL6NJ_T0035946.1 MGP_C57BL6NJ_G0020362.1 mouse_genomes_project 12 90279077 90287941 - MGP_C57BL6NJ_P0035946 Irf2bpl protein_coding protein_coding MGP_C57BL6NJ_T0000999.1 MGP_C57BL6NJ_G0000909.1 mouse_genomes_project 12 109089543 109092177 - TEC TEC MGP_C57BL6NJ_T0000121.1 MGP_C57BL6NJ_G0000093.1 mouse_genomes_project 12 120668741 120669199 - MGP_C57BL6NJ_P0000121 Ighv6-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000040.1 MGP_C57BL6NJ_G0000032.1 mouse_genomes_project 12 119551996 119552006 - IG_D_pseudogene IG_D_pseudogene MGP_C57BL6NJ_T0099847.1 MGP_C57BL6NJ_G0037893.1 mouse_genomes_project 12 81355487 81355589 - Gm25225 snRNA snRNA MGP_C57BL6NJ_T0000078.1 MGP_C57BL6NJ_G0000063.1 mouse_genomes_project 12 119976113 119978979 - MGP_C57BL6NJ_P0000078 Ighv2-6-8 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000079.1 MGP_C57BL6NJ_G0000063.1 mouse_genomes_project 12 119976118 119978979 - MGP_C57BL6NJ_P0000079 Ighv2-6-8 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101099.1 MGP_C57BL6NJ_G0039145.1 mouse_genomes_project 12 29881972 29882105 + Gm25408 snoRNA snoRNA MGP_C57BL6NJ_T0000332.1 MGP_C57BL6NJ_G0000251.1 mouse_genomes_project 12 119771244 119771705 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101141.1 MGP_C57BL6NJ_G0039187.1 mouse_genomes_project 12 115295511 115295585 + Gm24895 snoRNA snoRNA MGP_C57BL6NJ_T0035703.1 MGP_C57BL6NJ_G0020296.1 mouse_genomes_project 12 84584519 84659701 - MGP_C57BL6NJ_P0035703 Map3k9 protein_coding protein_coding MGP_C57BL6NJ_T0035704.1 MGP_C57BL6NJ_G0020296.1 mouse_genomes_project 12 84591588 84659405 - MGP_C57BL6NJ_P0035704 Map3k9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010088.1 MGP_C57BL6NJ_G0008173.1 mouse_genomes_project 12 115397629 115397709 + Mir412 miRNA miRNA MGP_C57BL6NJ_T0101130.1 MGP_C57BL6NJ_G0039176.1 mouse_genomes_project 12 94656527 94656656 + Gm23195 snoRNA snoRNA MGP_C57BL6NJ_T0099838.1 MGP_C57BL6NJ_G0037884.1 mouse_genomes_project 12 67073470 67073573 + Gm25599 snRNA snRNA MGP_C57BL6NJ_T0010049.1 MGP_C57BL6NJ_G0008134.1 mouse_genomes_project 12 115364277 115364359 + Mir411 miRNA miRNA MGP_C57BL6NJ_T0011582.1 MGP_C57BL6NJ_G0009667.1 mouse_genomes_project 12 31300155 31300473 - Gm23875 misc_RNA misc_RNA MGP_C57BL6NJ_T0000108.1 MGP_C57BL6NJ_G0000085.1 mouse_genomes_project 12 120489096 120489563 - MGP_C57BL6NJ_P0000108 Ighv7-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000109.1 MGP_C57BL6NJ_G0000085.1 mouse_genomes_project 12 120489096 120489637 - MGP_C57BL6NJ_P0000109 Ighv7-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035535.1 MGP_C57BL6NJ_G0020233.1 mouse_genomes_project 12 76544726 76547721 + MGP_C57BL6NJ_P0035535 Dbpht2 protein_coding protein_coding MGP_C57BL6NJ_T0000377.1 MGP_C57BL6NJ_G0000296.1 mouse_genomes_project 12 121589230 121589664 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034886.1 MGP_C57BL6NJ_G0019991.1 mouse_genomes_project 12 8809412 8931808 - MGP_C57BL6NJ_P0034886 Vsnl1 protein_coding protein_coding MGP_C57BL6NJ_T0006588.1 MGP_C57BL6NJ_G0005485.1 mouse_genomes_project 12 76531560 76543194 + lincRNA lincRNA MGP_C57BL6NJ_T0006589.1 MGP_C57BL6NJ_G0005485.1 mouse_genomes_project 12 76531568 76543208 + lincRNA lincRNA MGP_C57BL6NJ_T0006590.1 MGP_C57BL6NJ_G0005485.1 mouse_genomes_project 12 76536014 76543208 + lincRNA lincRNA MGP_C57BL6NJ_T0034832.1 MGP_C57BL6NJ_G0019971.1 mouse_genomes_project 12 2055412 2374378 - MGP_C57BL6NJ_P0034832 Klhl29 protein_coding protein_coding MGP_C57BL6NJ_T0036170.1 MGP_C57BL6NJ_G0020427.1 mouse_genomes_project 12 107635726 107655831 - MGP_C57BL6NJ_P0036170 Gm20604 protein_coding protein_coding MGP_C57BL6NJ_T0035397.1 MGP_C57BL6NJ_G0020184.1 mouse_genomes_project 12 71181201 71229048 - MGP_C57BL6NJ_P0035397 Nemf protein_coding protein_coding MGP_C57BL6NJ_T0035593.1 MGP_C57BL6NJ_G0020254.1 mouse_genomes_project 12 79272406 79275749 - MGP_C57BL6NJ_P0035593 protein_coding protein_coding MGP_C57BL6NJ_T0000147.1 MGP_C57BL6NJ_G0000111.1 mouse_genomes_project 12 121290656 121291090 - MGP_C57BL6NJ_P0000147 Ighv1-43 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000148.1 MGP_C57BL6NJ_G0000111.1 mouse_genomes_project 12 121290656 121290950 - MGP_C57BL6NJ_P0000148 Ighv1-43 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034746.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408468 626432 + MGP_C57BL6NJ_P0034746 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034747.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408478 626022 + MGP_C57BL6NJ_P0034747 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034748.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408504 625983 + MGP_C57BL6NJ_P0034748 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034749.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408520 626022 + MGP_C57BL6NJ_P0034749 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034750.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408521 491409 + MGP_C57BL6NJ_P0034750 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034751.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408522 564191 + Dtnb protein_coding retained_intron MGP_C57BL6NJ_T0034752.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408540 626019 + MGP_C57BL6NJ_P0034752 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034753.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408550 625766 + MGP_C57BL6NJ_P0034753 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034754.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408552 626017 + MGP_C57BL6NJ_P0034754 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034755.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408553 503565 + Dtnb protein_coding processed_transcript MGP_C57BL6NJ_T0034756.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408557 626019 + MGP_C57BL6NJ_P0034756 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034757.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408562 626019 + MGP_C57BL6NJ_P0034757 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034758.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408610 626129 + MGP_C57BL6NJ_P0034758 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034759.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408623 436364 + MGP_C57BL6NJ_P0034759 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034760.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 408707 596195 + MGP_C57BL6NJ_P0034760 Dtnb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034761.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 409071 626015 + MGP_C57BL6NJ_P0034761 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034762.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 428897 626019 + MGP_C57BL6NJ_P0034762 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034763.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 461981 628701 + MGP_C57BL6NJ_P0034763 Dtnb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034764.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 477903 626019 + MGP_C57BL6NJ_P0034764 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034765.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 527396 562070 + Dtnb protein_coding retained_intron MGP_C57BL6NJ_T0034766.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 562641 593700 + Dtnb protein_coding processed_transcript MGP_C57BL6NJ_T0034767.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 593514 625766 + Dtnb protein_coding retained_intron MGP_C57BL6NJ_T0034768.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 593768 626022 + MGP_C57BL6NJ_P0034768 Dtnb protein_coding protein_coding MGP_C57BL6NJ_T0034769.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 618946 626022 + Dtnb protein_coding processed_transcript MGP_C57BL6NJ_T0034770.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 619156 626021 + Dtnb protein_coding retained_intron MGP_C57BL6NJ_T0034771.1 MGP_C57BL6NJ_G0019950.1 mouse_genomes_project 12 624179 626022 + Dtnb protein_coding retained_intron MGP_C57BL6NJ_T0000350.1 MGP_C57BL6NJ_G0000269.1 mouse_genomes_project 12 120530193 120530487 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0010083.1 MGP_C57BL6NJ_G0008168.1 mouse_genomes_project 12 115393459 115393538 + Mir496a miRNA miRNA MGP_C57BL6NJ_T0003525.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26491 32398 + Rab10os antisense antisense MGP_C57BL6NJ_T0003526.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26513 41365 + Rab10os antisense antisense MGP_C57BL6NJ_T0003527.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26513 29261 + Rab10os antisense antisense MGP_C57BL6NJ_T0003528.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26778 41364 + Rab10os antisense antisense MGP_C57BL6NJ_T0003529.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26819 30222 + Rab10os antisense antisense MGP_C57BL6NJ_T0003530.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 26902 40932 + Rab10os antisense antisense MGP_C57BL6NJ_T0003531.1 MGP_C57BL6NJ_G0003232.1 mouse_genomes_project 12 27598 40987 + Rab10os antisense antisense MGP_C57BL6NJ_T0000124.1 MGP_C57BL6NJ_G0000095.1 mouse_genomes_project 12 120694158 120694616 - MGP_C57BL6NJ_P0000124 Ighv6-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000125.1 MGP_C57BL6NJ_G0000095.1 mouse_genomes_project 12 120694161 120694458 - MGP_C57BL6NJ_P0000125 Ighv6-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035899.1 MGP_C57BL6NJ_G0020350.1 mouse_genomes_project 12 88878515 88922981 + MGP_C57BL6NJ_P0035899 Jdp2 protein_coding protein_coding MGP_C57BL6NJ_T0035900.1 MGP_C57BL6NJ_G0020350.1 mouse_genomes_project 12 88878826 88922980 + MGP_C57BL6NJ_P0035900 Jdp2 protein_coding protein_coding MGP_C57BL6NJ_T0035901.1 MGP_C57BL6NJ_G0020350.1 mouse_genomes_project 12 88879428 88922981 + MGP_C57BL6NJ_P0035901 Jdp2 protein_coding protein_coding MGP_C57BL6NJ_T0000994.1 MGP_C57BL6NJ_G0000904.1 mouse_genomes_project 12 86120554 86121496 + TEC TEC MGP_C57BL6NJ_T0101115.1 MGP_C57BL6NJ_G0039161.1 mouse_genomes_project 12 60631138 60631269 - Gm24377 snoRNA snoRNA MGP_C57BL6NJ_T0035224.1 MGP_C57BL6NJ_G0020115.1 mouse_genomes_project 12 52124822 52220034 - MGP_C57BL6NJ_P0035224 Hectd1 protein_coding protein_coding MGP_C57BL6NJ_T0035225.1 MGP_C57BL6NJ_G0020115.1 mouse_genomes_project 12 52124822 52220034 - MGP_C57BL6NJ_P0035225 Hectd1 protein_coding protein_coding MGP_C57BL6NJ_T0000382.1 MGP_C57BL6NJ_G0000301.1 mouse_genomes_project 12 121767759 121768192 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035681.1 MGP_C57BL6NJ_G0020291.1 mouse_genomes_project 12 84269686 84274612 - MGP_C57BL6NJ_P0035681 protein_coding protein_coding MGP_C57BL6NJ_T0009984.1 MGP_C57BL6NJ_G0008069.1 mouse_genomes_project 12 29352623 29352830 - Gm25243 miRNA miRNA MGP_C57BL6NJ_T0101123.1 MGP_C57BL6NJ_G0039169.1 mouse_genomes_project 12 75304931 75305063 - Gm23910 snoRNA snoRNA MGP_C57BL6NJ_T0035295.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063361 58153611 + Mipol1 protein_coding retained_intron MGP_C57BL6NJ_T0035296.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063368 58200118 + Mipol1 protein_coding retained_intron MGP_C57BL6NJ_T0035297.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063370 58170971 + Mipol1 protein_coding retained_intron MGP_C57BL6NJ_T0035298.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063380 58358313 + MGP_C57BL6NJ_P0035298 Mipol1 protein_coding protein_coding MGP_C57BL6NJ_T0035299.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063380 58314813 + MGP_C57BL6NJ_P0035299 Mipol1 protein_coding protein_coding MGP_C57BL6NJ_T0035300.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58063425 58212940 + Mipol1 protein_coding retained_intron MGP_C57BL6NJ_T0035301.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58120125 58327070 + MGP_C57BL6NJ_P0035301 Mipol1 protein_coding protein_coding MGP_C57BL6NJ_T0035302.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58138946 58357638 + MGP_C57BL6NJ_P0035302 Mipol1 protein_coding protein_coding MGP_C57BL6NJ_T0035303.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58151037 58152631 + Mipol1 protein_coding retained_intron MGP_C57BL6NJ_T0035304.1 MGP_C57BL6NJ_G0020151.1 mouse_genomes_project 12 58177324 58212359 + Mipol1 protein_coding processed_transcript MGP_C57BL6NJ_T0034880.1 MGP_C57BL6NJ_G0019986.1 mouse_genomes_project 12 7816893 7821751 + MGP_C57BL6NJ_P0034880 Rdh14 protein_coding protein_coding MGP_C57BL6NJ_T0036573.1 MGP_C57BL6NJ_G0020571.1 mouse_genomes_project 12 124558258 124598706 + MGP_C57BL6NJ_P0036573 Cdca7l protein_coding protein_coding MGP_C57BL6NJ_T0036574.1 MGP_C57BL6NJ_G0020571.1 mouse_genomes_project 12 124558627 124593757 + MGP_C57BL6NJ_P0036574 Cdca7l protein_coding protein_coding MGP_C57BL6NJ_T0036575.1 MGP_C57BL6NJ_G0020571.1 mouse_genomes_project 12 124558631 124595627 + MGP_C57BL6NJ_P0036575 Cdca7l protein_coding protein_coding MGP_C57BL6NJ_T0099818.1 MGP_C57BL6NJ_G0037864.1 mouse_genomes_project 12 19611144 19611243 + Gm22766 snRNA snRNA MGP_C57BL6NJ_T0013103.1 MGP_C57BL6NJ_G0011148.1 mouse_genomes_project 12 23001874 23002187 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036004.1 MGP_C57BL6NJ_G0020382.1 mouse_genomes_project 12 91654783 91655212 + MGP_C57BL6NJ_P0036004 Gm10264 protein_coding protein_coding MGP_C57BL6NJ_T0035854.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88127754 88187359 - MGP_C57BL6NJ_P0035854 Arel1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035855.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88127756 88187435 - MGP_C57BL6NJ_P0035855 Arel1 protein_coding protein_coding MGP_C57BL6NJ_T0035856.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88146018 88156195 - MGP_C57BL6NJ_P0035856 Arel1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035857.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88153109 88159740 - MGP_C57BL6NJ_P0035857 Arel1 protein_coding protein_coding MGP_C57BL6NJ_T0035858.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88154709 88158215 - MGP_C57BL6NJ_P0035858 Arel1 protein_coding protein_coding MGP_C57BL6NJ_T0035859.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88154730 88187391 - MGP_C57BL6NJ_P0035859 Arel1 protein_coding protein_coding MGP_C57BL6NJ_T0035860.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88154739 88187373 - MGP_C57BL6NJ_P0035860 Arel1 protein_coding protein_coding MGP_C57BL6NJ_T0035861.1 MGP_C57BL6NJ_G0020336.1 mouse_genomes_project 12 88163898 88181121 - Arel1 protein_coding processed_transcript MGP_C57BL6NJ_T0000179.1 MGP_C57BL6NJ_G0000133.1 mouse_genomes_project 12 122332129 122332584 - MGP_C57BL6NJ_P0000179 Ighv1-74 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036341.1 MGP_C57BL6NJ_G0020495.1 mouse_genomes_project 12 114426666 114432475 + MGP_C57BL6NJ_P0036341 Slc25a47 protein_coding protein_coding MGP_C57BL6NJ_T0035041.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30106031 30109598 + Lamb1 protein_coding retained_intron MGP_C57BL6NJ_T0035042.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30106034 30107531 + MGP_C57BL6NJ_P0035042 Lamb1 protein_coding protein_coding MGP_C57BL6NJ_T0035043.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30106137 30170250 + MGP_C57BL6NJ_P0035043 Lamb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035044.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30106158 30170168 + MGP_C57BL6NJ_P0035044 Lamb1 protein_coding protein_coding MGP_C57BL6NJ_T0035045.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30117364 30128673 + Lamb1 protein_coding retained_intron MGP_C57BL6NJ_T0035046.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30118883 30119648 + Lamb1 protein_coding retained_intron MGP_C57BL6NJ_T0035047.1 MGP_C57BL6NJ_G0020049.1 mouse_genomes_project 12 30164199 30165133 + Lamb1 protein_coding retained_intron MGP_C57BL6NJ_T0035061.1 MGP_C57BL6NJ_G0020053.1 mouse_genomes_project 12 30380774 30428092 - MGP_C57BL6NJ_P0035061 Slc26a4 protein_coding protein_coding MGP_C57BL6NJ_T0101149.1 MGP_C57BL6NJ_G0039195.1 mouse_genomes_project 12 115325525 115325607 + Gm23347 snoRNA snoRNA MGP_C57BL6NJ_T0000996.1 MGP_C57BL6NJ_G0000906.1 mouse_genomes_project 12 89377226 89377833 + TEC TEC MGP_C57BL6NJ_T0034971.1 MGP_C57BL6NJ_G0020021.1 mouse_genomes_project 12 22935707 22980598 + MGP_C57BL6NJ_P0034971 Grhl1 protein_coding protein_coding MGP_C57BL6NJ_T0034972.1 MGP_C57BL6NJ_G0020021.1 mouse_genomes_project 12 22943965 22980602 + MGP_C57BL6NJ_P0034972 Grhl1 protein_coding protein_coding MGP_C57BL6NJ_T0000326.1 MGP_C57BL6NJ_G0000245.1 mouse_genomes_project 12 119678885 119679361 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0102158.1 MGP_C57BL6NJ_G0040186.1 mouse_genomes_project 12 19030458 19030605 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0010009.1 MGP_C57BL6NJ_G0008094.1 mouse_genomes_project 12 90458441 90458537 + Gm25847 miRNA miRNA MGP_C57BL6NJ_T0035939.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90074369 90100173 - MGP_C57BL6NJ_P0035939 Angel1 protein_coding protein_coding MGP_C57BL6NJ_T0035940.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90076062 90080037 - Angel1 protein_coding processed_transcript MGP_C57BL6NJ_T0035941.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90076180 90090355 - Angel1 protein_coding processed_transcript MGP_C57BL6NJ_T0035942.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90076222 90079832 - Angel1 protein_coding processed_transcript MGP_C57BL6NJ_T0035943.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90076306 90091899 - Angel1 protein_coding processed_transcript MGP_C57BL6NJ_T0035944.1 MGP_C57BL6NJ_G0020360.1 mouse_genomes_project 12 90092058 90095652 - Angel1 protein_coding processed_transcript MGP_C57BL6NJ_T0035110.1 MGP_C57BL6NJ_G0020069.1 mouse_genomes_project 12 33002074 33004221 + MGP_C57BL6NJ_P0035110 Twist1 protein_coding protein_coding MGP_C57BL6NJ_T0035283.1 MGP_C57BL6NJ_G0020145.1 mouse_genomes_project 12 57079988 57097511 - MGP_C57BL6NJ_P0035283 Mbip protein_coding protein_coding MGP_C57BL6NJ_T0013141.1 MGP_C57BL6NJ_G0011186.1 mouse_genomes_project 12 95835437 95859938 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013098.1 MGP_C57BL6NJ_G0011143.1 mouse_genomes_project 12 2607757 2610097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099816.1 MGP_C57BL6NJ_G0037862.1 mouse_genomes_project 12 12205002 12205109 + Gm25414 snRNA snRNA MGP_C57BL6NJ_T0035135.1 MGP_C57BL6NJ_G0020083.1 mouse_genomes_project 12 35518578 35522862 + MGP_C57BL6NJ_P0035135 Sostdc1 protein_coding protein_coding MGP_C57BL6NJ_T0099250.1 MGP_C57BL6NJ_G0037314.1 mouse_genomes_project 12 110152844 110153119 - Scarna13 scaRNA scaRNA MGP_C57BL6NJ_T0035945.1 MGP_C57BL6NJ_G0020361.1 mouse_genomes_project 12 90108095 90138790 + MGP_C57BL6NJ_P0035945 Lrrc74a protein_coding protein_coding MGP_C57BL6NJ_T0000328.1 MGP_C57BL6NJ_G0000247.1 mouse_genomes_project 12 119708707 119709203 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034933.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15192489 15244695 - MGP_C57BL6NJ_P0034933 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0034934.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15192490 15244648 - MGP_C57BL6NJ_P0034934 Atp6v1c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034935.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15192490 15244686 - MGP_C57BL6NJ_P0034935 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0034936.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15192491 15220554 - MGP_C57BL6NJ_P0034936 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0034937.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15192627 15244647 - MGP_C57BL6NJ_P0034937 Atp6v1c2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034938.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15207726 15249352 - MGP_C57BL6NJ_P0034938 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0034939.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15220441 15244713 - MGP_C57BL6NJ_P0034939 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0034940.1 MGP_C57BL6NJ_G0020009.1 mouse_genomes_project 12 15220485 15249363 - MGP_C57BL6NJ_P0034940 Atp6v1c2 protein_coding protein_coding MGP_C57BL6NJ_T0000351.1 MGP_C57BL6NJ_G0000270.1 mouse_genomes_project 12 120589627 120590060 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035838.1 MGP_C57BL6NJ_G0020329.1 mouse_genomes_project 12 87783573 87799549 - MGP_C57BL6NJ_P0035838 Abcd4 protein_coding protein_coding MGP_C57BL6NJ_T0035839.1 MGP_C57BL6NJ_G0020329.1 mouse_genomes_project 12 87785178 87799387 - MGP_C57BL6NJ_P0035839 Abcd4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036416.1 MGP_C57BL6NJ_G0020516.1 mouse_genomes_project 12 117194607 117289127 - MGP_C57BL6NJ_P0036416 Cdc42bpb protein_coding protein_coding MGP_C57BL6NJ_T0006649.1 MGP_C57BL6NJ_G0005530.1 mouse_genomes_project 12 115289597 115291608 + Gm26945 lincRNA lincRNA MGP_C57BL6NJ_T0010081.1 MGP_C57BL6NJ_G0008166.1 mouse_genomes_project 12 115389923 115390005 + Mir453 miRNA miRNA MGP_C57BL6NJ_T0036162.1 MGP_C57BL6NJ_G0020423.1 mouse_genomes_project 12 107353121 107381796 + MGP_C57BL6NJ_P0036162 Golga5 protein_coding protein_coding MGP_C57BL6NJ_T0036163.1 MGP_C57BL6NJ_G0020423.1 mouse_genomes_project 12 107353897 107381796 + MGP_C57BL6NJ_P0036163 Golga5 protein_coding protein_coding MGP_C57BL6NJ_T0101133.1 MGP_C57BL6NJ_G0039179.1 mouse_genomes_project 12 107128222 107128437 - Gm25203 snoRNA snoRNA MGP_C57BL6NJ_T0102159.1 MGP_C57BL6NJ_G0040187.1 mouse_genomes_project 12 105820369 105824034 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102160.1 MGP_C57BL6NJ_G0040187.1 mouse_genomes_project 12 105823862 105824514 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0000130.1 MGP_C57BL6NJ_G0000100.1 mouse_genomes_project 12 120760484 120760931 - MGP_C57BL6NJ_P0000130 Ighv10-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036069.1 MGP_C57BL6NJ_G0020397.1 mouse_genomes_project 12 103125527 103184266 - MGP_C57BL6NJ_P0036069 Ptpn21 protein_coding protein_coding MGP_C57BL6NJ_T0036070.1 MGP_C57BL6NJ_G0020397.1 mouse_genomes_project 12 103125527 103187026 - MGP_C57BL6NJ_P0036070 Ptpn21 protein_coding protein_coding MGP_C57BL6NJ_T0036248.1 MGP_C57BL6NJ_G0020457.1 mouse_genomes_project 12 109315157 109317132 + Serpina3g protein_coding processed_transcript MGP_C57BL6NJ_T0036249.1 MGP_C57BL6NJ_G0020457.1 mouse_genomes_project 12 109315164 109322891 + MGP_C57BL6NJ_P0036249 Serpina3g protein_coding protein_coding MGP_C57BL6NJ_T0036250.1 MGP_C57BL6NJ_G0020457.1 mouse_genomes_project 12 109315171 109318178 + MGP_C57BL6NJ_P0036250 Serpina3g protein_coding protein_coding MGP_C57BL6NJ_T0036251.1 MGP_C57BL6NJ_G0020457.1 mouse_genomes_project 12 109315172 109317196 + MGP_C57BL6NJ_P0036251 Serpina3g protein_coding protein_coding MGP_C57BL6NJ_T0035590.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79245357 79408419 + MGP_C57BL6NJ_P0035590 Fntb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035591.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79245366 79407933 + MGP_C57BL6NJ_P0035591 Fntb protein_coding protein_coding MGP_C57BL6NJ_T0035600.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79318759 79409172 + MGP_C57BL6NJ_P0035600 Fntb protein_coding protein_coding MGP_C57BL6NJ_T0035601.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79318778 79326020 + Fntb protein_coding processed_transcript MGP_C57BL6NJ_T0035602.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79321640 79373240 + Fntb protein_coding processed_transcript MGP_C57BL6NJ_T0035603.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79372492 79396045 + Fntb protein_coding processed_transcript MGP_C57BL6NJ_T0035604.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79395242 79396124 + Fntb protein_coding processed_transcript MGP_C57BL6NJ_T0035605.1 MGP_C57BL6NJ_G0020253.1 mouse_genomes_project 12 79395790 79400450 + Fntb protein_coding retained_intron MGP_C57BL6NJ_T0009976.1 MGP_C57BL6NJ_G0008061.1 mouse_genomes_project 12 540572 540635 + Gm26050 miRNA miRNA MGP_C57BL6NJ_T0098976.1 MGP_C57BL6NJ_G0037040.1 mouse_genomes_project 12 10260309 10260414 - Gm27952 rRNA rRNA MGP_C57BL6NJ_T0035646.1 MGP_C57BL6NJ_G0020278.1 mouse_genomes_project 12 83255999 83351999 + MGP_C57BL6NJ_P0035646 Galnt16 protein_coding protein_coding MGP_C57BL6NJ_T0000028.1 MGP_C57BL6NJ_G0000020.1 mouse_genomes_project 12 119504074 119504084 - MGP_C57BL6NJ_P0000028 Ighd5-3 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0010041.1 MGP_C57BL6NJ_G0008126.1 mouse_genomes_project 12 115243257 115243337 - Mir3071 miRNA miRNA MGP_C57BL6NJ_T0099860.1 MGP_C57BL6NJ_G0037906.1 mouse_genomes_project 12 123123021 123123125 - Gm25112 snRNA snRNA MGP_C57BL6NJ_T0010008.1 MGP_C57BL6NJ_G0008093.1 mouse_genomes_project 12 88490134 88490197 - Mir6938 miRNA miRNA MGP_C57BL6NJ_T0035846.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87988862 88085753 - MGP_C57BL6NJ_P0035846 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035847.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87988863 88085716 - MGP_C57BL6NJ_P0035847 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035848.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87988979 88085700 - MGP_C57BL6NJ_P0035848 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035849.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87990856 87997491 - MGP_C57BL6NJ_P0035849 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035850.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87992029 87998619 - MGP_C57BL6NJ_P0035850 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035851.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 87997506 88005111 - MGP_C57BL6NJ_P0035851 Ltbp2 protein_coding protein_coding MGP_C57BL6NJ_T0035852.1 MGP_C57BL6NJ_G0020334.1 mouse_genomes_project 12 88013364 88085712 - Ltbp2 protein_coding retained_intron MGP_C57BL6NJ_T0036258.1 MGP_C57BL6NJ_G0020463.1 mouse_genomes_project 12 109575757 109577879 - MGP_C57BL6NJ_P0036258 Gsc protein_coding protein_coding MGP_C57BL6NJ_T0035400.1 MGP_C57BL6NJ_G0020187.1 mouse_genomes_project 12 71495625 71501026 - MGP_C57BL6NJ_P0035400 Vcpkmt protein_coding protein_coding MGP_C57BL6NJ_T0101118.1 MGP_C57BL6NJ_G0039164.1 mouse_genomes_project 12 66572780 66572866 + Gm25970 snoRNA snoRNA MGP_C57BL6NJ_T0000117.1 MGP_C57BL6NJ_G0000090.1 mouse_genomes_project 12 120597768 120598243 - MGP_C57BL6NJ_P0000117 Ighv3-8 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000327.1 MGP_C57BL6NJ_G0000246.1 mouse_genomes_project 12 119680203 119680640 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036110.1 MGP_C57BL6NJ_G0020408.1 mouse_genomes_project 12 104916348 105036877 - MGP_C57BL6NJ_P0036110 Ttc7b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036111.1 MGP_C57BL6NJ_G0020408.1 mouse_genomes_project 12 104916351 105151570 - MGP_C57BL6NJ_P0036111 Ttc7b protein_coding protein_coding MGP_C57BL6NJ_T0036217.1 MGP_C57BL6NJ_G0020442.1 mouse_genomes_project 12 108391001 108392515 - MGP_C57BL6NJ_P0036217 Ifi27l2a protein_coding protein_coding MGP_C57BL6NJ_T0036071.1 MGP_C57BL6NJ_G0020398.1 mouse_genomes_project 12 103196580 103238379 + MGP_C57BL6NJ_P0036071 Zc3h14 protein_coding protein_coding MGP_C57BL6NJ_T0036072.1 MGP_C57BL6NJ_G0020398.1 mouse_genomes_project 12 103196580 103238379 + MGP_C57BL6NJ_P0036072 Zc3h14 protein_coding protein_coding MGP_C57BL6NJ_T0036073.1 MGP_C57BL6NJ_G0020398.1 mouse_genomes_project 12 103196580 103238379 + MGP_C57BL6NJ_P0036073 Zc3h14 protein_coding protein_coding MGP_C57BL6NJ_T0036074.1 MGP_C57BL6NJ_G0020398.1 mouse_genomes_project 12 103221733 103238379 + MGP_C57BL6NJ_P0036074 Zc3h14 protein_coding protein_coding MGP_C57BL6NJ_T0011600.1 MGP_C57BL6NJ_G0009685.1 mouse_genomes_project 12 115186091 115186188 + Gm27335 misc_RNA misc_RNA MGP_C57BL6NJ_T0035411.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71742601 71838324 - Map4k5 protein_coding processed_transcript MGP_C57BL6NJ_T0035412.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71742601 71838230 - MGP_C57BL6NJ_P0035412 Map4k5 protein_coding protein_coding MGP_C57BL6NJ_T0035413.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71742601 71838421 - MGP_C57BL6NJ_P0035413 Map4k5 protein_coding protein_coding MGP_C57BL6NJ_T0035414.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71742602 71837981 - MGP_C57BL6NJ_P0035414 Map4k5 protein_coding protein_coding MGP_C57BL6NJ_T0035415.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71742612 71757146 - Map4k5 protein_coding retained_intron MGP_C57BL6NJ_T0035416.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71756474 71757550 - Map4k5 protein_coding processed_transcript MGP_C57BL6NJ_T0035417.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71784936 71816975 - Map4k5 protein_coding retained_intron MGP_C57BL6NJ_T0035418.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71788634 71838344 - Map4k5 protein_coding retained_intron MGP_C57BL6NJ_T0035419.1 MGP_C57BL6NJ_G0020192.1 mouse_genomes_project 12 71789104 71797520 - Map4k5 protein_coding retained_intron MGP_C57BL6NJ_T0035533.1 MGP_C57BL6NJ_G0020232.1 mouse_genomes_project 12 76224121 76512091 + MGP_C57BL6NJ_P0035533 Syt16 protein_coding protein_coding MGP_C57BL6NJ_T0035534.1 MGP_C57BL6NJ_G0020232.1 mouse_genomes_project 12 76395001 76512087 + MGP_C57BL6NJ_P0035534 Syt16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035546.1 MGP_C57BL6NJ_G0020239.1 mouse_genomes_project 12 78117205 78141965 - MGP_C57BL6NJ_P0035546 Sgpp1 protein_coding protein_coding MGP_C57BL6NJ_T0006572.1 MGP_C57BL6NJ_G0005473.1 mouse_genomes_project 12 31785507 31790522 + Gdap10 lincRNA lincRNA MGP_C57BL6NJ_T0036419.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117361595 117374237 + MGP_C57BL6NJ_P0036419 Tnfaip2 protein_coding protein_coding MGP_C57BL6NJ_T0036420.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117361784 117373897 + MGP_C57BL6NJ_P0036420 Tnfaip2 protein_coding protein_coding MGP_C57BL6NJ_T0036421.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117361788 117373897 + Tnfaip2 protein_coding retained_intron MGP_C57BL6NJ_T0036422.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117361788 117367763 + MGP_C57BL6NJ_P0036422 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036423.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117363450 117364638 + MGP_C57BL6NJ_P0036423 Tnfaip2 protein_coding protein_coding MGP_C57BL6NJ_T0036424.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117364124 117373044 + MGP_C57BL6NJ_P0036424 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036425.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117365210 117373044 + MGP_C57BL6NJ_P0036425 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036426.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117367310 117368487 + Tnfaip2 protein_coding retained_intron MGP_C57BL6NJ_T0036427.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117368736 117370688 + Tnfaip2 protein_coding retained_intron MGP_C57BL6NJ_T0036428.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117369091 117372978 + MGP_C57BL6NJ_P0036428 Tnfaip2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036429.1 MGP_C57BL6NJ_G0020519.1 mouse_genomes_project 12 117369737 117372845 + Tnfaip2 protein_coding retained_intron MGP_C57BL6NJ_T0035938.1 MGP_C57BL6NJ_G0020359.1 mouse_genomes_project 12 90051803 90065184 + MGP_C57BL6NJ_P0035938 Vash1 protein_coding protein_coding MGP_C57BL6NJ_T0036219.1 MGP_C57BL6NJ_G0020444.1 mouse_genomes_project 12 108474919 108579518 + MGP_C57BL6NJ_P0036219 Ppp4r4 protein_coding protein_coding MGP_C57BL6NJ_T0036220.1 MGP_C57BL6NJ_G0020444.1 mouse_genomes_project 12 108476189 108578591 + MGP_C57BL6NJ_P0036220 Ppp4r4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036221.1 MGP_C57BL6NJ_G0020444.1 mouse_genomes_project 12 108508260 108578753 + MGP_C57BL6NJ_P0036221 Ppp4r4 protein_coding protein_coding MGP_C57BL6NJ_T0036222.1 MGP_C57BL6NJ_G0020444.1 mouse_genomes_project 12 108531199 108542322 + MGP_C57BL6NJ_P0036222 Ppp4r4 protein_coding protein_coding MGP_C57BL6NJ_T0036223.1 MGP_C57BL6NJ_G0020444.1 mouse_genomes_project 12 108549580 108554327 + MGP_C57BL6NJ_P0036223 Ppp4r4 protein_coding protein_coding MGP_C57BL6NJ_T0010005.1 MGP_C57BL6NJ_G0008090.1 mouse_genomes_project 12 79642916 79642984 - Gm22696 miRNA miRNA MGP_C57BL6NJ_T0013150.1 MGP_C57BL6NJ_G0011195.1 mouse_genomes_project 12 111777051 111777397 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036418.1 MGP_C57BL6NJ_G0020518.1 mouse_genomes_project 12 117336309 117350181 + MGP_C57BL6NJ_P0036418 Exoc3l4 protein_coding protein_coding MGP_C57BL6NJ_T0035672.1 MGP_C57BL6NJ_G0020287.1 mouse_genomes_project 12 84028200 84170022 - MGP_C57BL6NJ_P0035672 Slc8a3 protein_coding protein_coding MGP_C57BL6NJ_T0035673.1 MGP_C57BL6NJ_G0020287.1 mouse_genomes_project 12 84028561 84169817 - MGP_C57BL6NJ_P0035673 Slc8a3 protein_coding protein_coding MGP_C57BL6NJ_T0035674.1 MGP_C57BL6NJ_G0020287.1 mouse_genomes_project 12 84029731 84170038 - MGP_C57BL6NJ_P0035674 Slc8a3 protein_coding protein_coding MGP_C57BL6NJ_T0035675.1 MGP_C57BL6NJ_G0020287.1 mouse_genomes_project 12 84032682 84127790 - MGP_C57BL6NJ_P0035675 Slc8a3 protein_coding protein_coding MGP_C57BL6NJ_T0035676.1 MGP_C57BL6NJ_G0020287.1 mouse_genomes_project 12 84044309 84170038 - Slc8a3 protein_coding retained_intron MGP_C57BL6NJ_T0035579.1 MGP_C57BL6NJ_G0020246.1 mouse_genomes_project 12 78824222 78853729 + MGP_C57BL6NJ_P0035579 Zbtb1 protein_coding protein_coding MGP_C57BL6NJ_T0034843.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919744 6002072 + MGP_C57BL6NJ_P0034843 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034844.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919744 6000945 + MGP_C57BL6NJ_P0034844 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034845.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919755 5999811 + MGP_C57BL6NJ_P0034845 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034846.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919834 6002052 + MGP_C57BL6NJ_P0034846 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034847.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919869 5953812 + Pum2 protein_coding processed_transcript MGP_C57BL6NJ_T0034848.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5919885 6002048 + MGP_C57BL6NJ_P0034848 Pum2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034849.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920030 6002045 + MGP_C57BL6NJ_P0034849 Pum2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034850.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920031 5999454 + MGP_C57BL6NJ_P0034850 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034851.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920080 5999519 + MGP_C57BL6NJ_P0034851 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034852.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920291 6002072 + MGP_C57BL6NJ_P0034852 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034853.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920346 5960074 + MGP_C57BL6NJ_P0034853 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034854.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5920375 5959843 + MGP_C57BL6NJ_P0034854 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034855.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5923144 5955934 + MGP_C57BL6NJ_P0034855 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034856.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5944530 5960357 + MGP_C57BL6NJ_P0034856 Pum2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034857.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5956669 5968889 + MGP_C57BL6NJ_P0034857 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034858.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5977631 5997689 + MGP_C57BL6NJ_P0034858 Pum2 protein_coding protein_coding MGP_C57BL6NJ_T0034859.1 MGP_C57BL6NJ_G0019978.1 mouse_genomes_project 12 5991960 5992880 + Pum2 protein_coding retained_intron MGP_C57BL6NJ_T0101109.1 MGP_C57BL6NJ_G0039155.1 mouse_genomes_project 12 45893955 45894162 + Gm24948 snoRNA snoRNA MGP_C57BL6NJ_T0013173.1 MGP_C57BL6NJ_G0011218.1 mouse_genomes_project 12 124546008 124546353 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013125.1 MGP_C57BL6NJ_G0011170.1 mouse_genomes_project 12 76592751 76594693 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035931.1 MGP_C57BL6NJ_G0020357.1 mouse_genomes_project 12 89565591 89616083 + MGP_C57BL6NJ_P0035931 Gpatch2l protein_coding protein_coding MGP_C57BL6NJ_T0013133.1 MGP_C57BL6NJ_G0011178.1 mouse_genomes_project 12 86690801 86691189 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035967.1 MGP_C57BL6NJ_G0020368.1 mouse_genomes_project 12 90573074 90589523 + MGP_C57BL6NJ_P0035967 Gstz1 protein_coding protein_coding MGP_C57BL6NJ_T0035286.1 MGP_C57BL6NJ_G0020147.1 mouse_genomes_project 12 57378865 57380747 - MGP_C57BL6NJ_P0035286 Nkx2-9 protein_coding protein_coding MGP_C57BL6NJ_T0035618.1 MGP_C57BL6NJ_G0020263.1 mouse_genomes_project 12 81473856 81505158 + MGP_C57BL6NJ_P0035618 Eif2s1 protein_coding protein_coding MGP_C57BL6NJ_T0013144.1 MGP_C57BL6NJ_G0011189.1 mouse_genomes_project 12 105881513 105882305 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036433.1 MGP_C57BL6NJ_G0020522.1 mouse_genomes_project 12 117508929 117598668 + MGP_C57BL6NJ_P0036433 Mark3 protein_coding protein_coding MGP_C57BL6NJ_T0036434.1 MGP_C57BL6NJ_G0020522.1 mouse_genomes_project 12 117508929 117598668 + MGP_C57BL6NJ_P0036434 Mark3 protein_coding protein_coding MGP_C57BL6NJ_T0036435.1 MGP_C57BL6NJ_G0020522.1 mouse_genomes_project 12 117553018 117598056 + MGP_C57BL6NJ_P0036435 Mark3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035401.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71501759 71505117 - Sos2 protein_coding retained_intron MGP_C57BL6NJ_T0035402.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71501763 71611362 - MGP_C57BL6NJ_P0035402 Sos2 protein_coding protein_coding MGP_C57BL6NJ_T0035403.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71502850 71611351 - MGP_C57BL6NJ_P0035403 Sos2 protein_coding protein_coding MGP_C57BL6NJ_T0035404.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71503086 71611137 - MGP_C57BL6NJ_P0035404 Sos2 protein_coding protein_coding MGP_C57BL6NJ_T0035405.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71503372 71507861 - Sos2 protein_coding retained_intron MGP_C57BL6NJ_T0035406.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71513426 71515800 - Sos2 protein_coding retained_intron MGP_C57BL6NJ_T0035407.1 MGP_C57BL6NJ_G0020188.1 mouse_genomes_project 12 71534719 71537393 - Sos2 protein_coding retained_intron MGP_C57BL6NJ_T0035108.1 MGP_C57BL6NJ_G0020067.1 mouse_genomes_project 12 32430443 32442417 + MGP_C57BL6NJ_P0035108 Twistnb protein_coding protein_coding MGP_C57BL6NJ_T0035062.1 MGP_C57BL6NJ_G0020054.1 mouse_genomes_project 12 30485369 30526392 - MGP_C57BL6NJ_P0035062 Bcap29 protein_coding protein_coding MGP_C57BL6NJ_T0035063.1 MGP_C57BL6NJ_G0020054.1 mouse_genomes_project 12 30485369 30526331 - MGP_C57BL6NJ_P0035063 Bcap29 protein_coding protein_coding MGP_C57BL6NJ_T0000352.1 MGP_C57BL6NJ_G0000271.1 mouse_genomes_project 12 120595471 120595766 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0010030.1 MGP_C57BL6NJ_G0008115.1 mouse_genomes_project 12 115233972 115234069 + Mir337 miRNA miRNA MGP_C57BL6NJ_T0000386.1 MGP_C57BL6NJ_G0000305.1 mouse_genomes_project 12 122088194 122088488 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035408.1 MGP_C57BL6NJ_G0020189.1 mouse_genomes_project 12 71619941 71658786 - MGP_C57BL6NJ_P0035408 L2hgdh protein_coding protein_coding MGP_C57BL6NJ_T0035282.1 MGP_C57BL6NJ_G0020144.1 mouse_genomes_project 12 56547249 56585169 + MGP_C57BL6NJ_P0035282 Brms1l protein_coding protein_coding MGP_C57BL6NJ_T0013142.1 MGP_C57BL6NJ_G0011187.1 mouse_genomes_project 12 100257891 100258245 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000083.1 MGP_C57BL6NJ_G0000066.1 mouse_genomes_project 12 120023669 120024127 - MGP_C57BL6NJ_P0000083 Ighv5-16 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000084.1 MGP_C57BL6NJ_G0000066.1 mouse_genomes_project 12 120023669 120024154 - MGP_C57BL6NJ_P0000084 Ighv5-16 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036551.1 MGP_C57BL6NJ_G0020562.1 mouse_genomes_project 12 119645299 119647893 + MGP_C57BL6NJ_P0036551 protein_coding protein_coding MGP_C57BL6NJ_T0035969.1 MGP_C57BL6NJ_G0020370.1 mouse_genomes_project 12 90629796 90637387 + Samd15 protein_coding retained_intron MGP_C57BL6NJ_T0035970.1 MGP_C57BL6NJ_G0020370.1 mouse_genomes_project 12 90630551 90648816 + MGP_C57BL6NJ_P0035970 Samd15 protein_coding protein_coding MGP_C57BL6NJ_T0035971.1 MGP_C57BL6NJ_G0020370.1 mouse_genomes_project 12 90630758 90631952 + MGP_C57BL6NJ_P0035971 Samd15 protein_coding protein_coding MGP_C57BL6NJ_T0010101.1 MGP_C57BL6NJ_G0008186.1 mouse_genomes_project 12 119476975 119477053 - Gm22175 miRNA miRNA MGP_C57BL6NJ_T0000365.1 MGP_C57BL6NJ_G0000284.1 mouse_genomes_project 12 121115722 121116150 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035892.1 MGP_C57BL6NJ_G0020346.1 mouse_genomes_project 12 88545266 88556034 + MGP_C57BL6NJ_P0035892 Zc2hc1c protein_coding protein_coding MGP_C57BL6NJ_T0036174.1 MGP_C57BL6NJ_G0020430.1 mouse_genomes_project 12 107648104 107654959 - MGP_C57BL6NJ_P0036174 AK010878 protein_coding protein_coding MGP_C57BL6NJ_T0036175.1 MGP_C57BL6NJ_G0020430.1 mouse_genomes_project 12 107653443 107654962 - MGP_C57BL6NJ_P0036175 AK010878 protein_coding protein_coding MGP_C57BL6NJ_T0101137.1 MGP_C57BL6NJ_G0039183.1 mouse_genomes_project 12 115283024 115283099 + Gm23474 snoRNA snoRNA MGP_C57BL6NJ_T0102788.1 MGP_C57BL6NJ_G0040582.1 mouse_genomes_project 12 122528518 122529151 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0000016.1 MGP_C57BL6NJ_G0000010.1 mouse_genomes_project 12 119469404 119473561 - MGP_C57BL6NJ_P0000016 Ighm IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000017.1 MGP_C57BL6NJ_G0000010.1 mouse_genomes_project 12 119471571 119473561 - MGP_C57BL6NJ_P0000017 Ighm IG_C_gene IG_C_gene MGP_C57BL6NJ_T0036550.1 MGP_C57BL6NJ_G0000010.1 mouse_genomes_project 12 119469402 119473487 - MGP_C57BL6NJ_P0036550 Ighm IG_C_gene unknown_likely_coding MGP_C57BL6NJ_T0036588.1 MGP_C57BL6NJ_G0020577.1 mouse_genomes_project 12 126271776 126299382 + MGP_C57BL6NJ_P0036588 Macc1 protein_coding protein_coding MGP_C57BL6NJ_T0101144.1 MGP_C57BL6NJ_G0039190.1 mouse_genomes_project 12 115303578 115303650 + Gm23508 snoRNA snoRNA MGP_C57BL6NJ_T0035494.1 MGP_C57BL6NJ_G0020216.1 mouse_genomes_project 12 74651345 74693854 + MGP_C57BL6NJ_P0035494 Pcnx4 protein_coding protein_coding MGP_C57BL6NJ_T0036224.1 MGP_C57BL6NJ_G0020445.1 mouse_genomes_project 12 108580472 108594328 - MGP_C57BL6NJ_P0036224 Serpina10 protein_coding protein_coding MGP_C57BL6NJ_T0036225.1 MGP_C57BL6NJ_G0020445.1 mouse_genomes_project 12 108583262 108594305 - MGP_C57BL6NJ_P0036225 Serpina10 protein_coding protein_coding MGP_C57BL6NJ_T0003566.1 MGP_C57BL6NJ_G0003261.1 mouse_genomes_project 12 94895300 94925516 + 5430427M07Rik antisense antisense MGP_C57BL6NJ_T0099825.1 MGP_C57BL6NJ_G0037871.1 mouse_genomes_project 12 54756887 54757036 + Gm22220 snRNA snRNA MGP_C57BL6NJ_T0098986.1 MGP_C57BL6NJ_G0037050.1 mouse_genomes_project 12 85082743 85082839 + n-R5s62 rRNA rRNA MGP_C57BL6NJ_T0006604.1 MGP_C57BL6NJ_G0005497.1 mouse_genomes_project 12 89487904 89515930 + Gm805 lincRNA lincRNA MGP_C57BL6NJ_T0000004.1 MGP_C57BL6NJ_G0000003.1 mouse_genomes_project 12 119304269 119309673 - MGP_C57BL6NJ_P0000004 Igha IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000005.1 MGP_C57BL6NJ_G0000003.1 mouse_genomes_project 12 119308138 119309673 - MGP_C57BL6NJ_P0000005 Igha IG_C_gene IG_C_gene MGP_C57BL6NJ_T0017774.1 MGP_C57BL6NJ_G0015629.1 mouse_genomes_project 12 103800710 103804723 - Gm20682 processed_transcript processed_transcript MGP_C57BL6NJ_T0035624.1 MGP_C57BL6NJ_G0020268.1 mouse_genomes_project 12 81753486 81781014 + MGP_C57BL6NJ_P0035624 Arg2 protein_coding protein_coding MGP_C57BL6NJ_T0000041.1 MGP_C57BL6NJ_G0000033.1 mouse_genomes_project 12 119611238 119611248 - IG_D_pseudogene IG_D_pseudogene MGP_C57BL6NJ_T0035370.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68112141 68940246 - MGP_C57BL6NJ_P0035370 Mdga2 protein_coding protein_coding MGP_C57BL6NJ_T0035371.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68113209 68113632 - MGP_C57BL6NJ_P0035371 Mdga2 protein_coding protein_coding MGP_C57BL6NJ_T0035372.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68113755 68938918 - MGP_C57BL6NJ_P0035372 Mdga2 protein_coding protein_coding MGP_C57BL6NJ_T0035373.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68114042 68938899 - MGP_C57BL6NJ_P0035373 Mdga2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035374.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68123960 68130320 - Mdga2 protein_coding retained_intron MGP_C57BL6NJ_T0035375.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68277493 68288006 - Mdga2 protein_coding processed_transcript MGP_C57BL6NJ_T0035376.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68355672 68502458 - Mdga2 protein_coding processed_transcript MGP_C57BL6NJ_T0035377.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68910125 68940239 - Mdga2 protein_coding processed_transcript MGP_C57BL6NJ_T0035378.1 MGP_C57BL6NJ_G0020174.1 mouse_genomes_project 12 68930240 68940078 - Mdga2 protein_coding processed_transcript MGP_C57BL6NJ_T0035393.1 MGP_C57BL6NJ_G0020183.1 mouse_genomes_project 12 71164766 71169203 + Klhdc2 protein_coding retained_intron MGP_C57BL6NJ_T0035394.1 MGP_C57BL6NJ_G0020183.1 mouse_genomes_project 12 71164807 71180345 + MGP_C57BL6NJ_P0035394 Klhdc2 protein_coding protein_coding MGP_C57BL6NJ_T0035395.1 MGP_C57BL6NJ_G0020183.1 mouse_genomes_project 12 71164840 71178324 + Klhdc2 protein_coding retained_intron MGP_C57BL6NJ_T0035396.1 MGP_C57BL6NJ_G0020183.1 mouse_genomes_project 12 71170486 71178352 + Klhdc2 protein_coding retained_intron MGP_C57BL6NJ_T0034969.1 MGP_C57BL6NJ_G0020020.1 mouse_genomes_project 12 22857478 22919986 + MGP_C57BL6NJ_P0034969 Taf1b protein_coding protein_coding MGP_C57BL6NJ_T0034970.1 MGP_C57BL6NJ_G0020020.1 mouse_genomes_project 12 22857529 22919779 + MGP_C57BL6NJ_P0034970 Taf1b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0034875.1 MGP_C57BL6NJ_G0019984.1 mouse_genomes_project 12 6897476 6904522 + MGP_C57BL6NJ_P0034875 Osr1 protein_coding protein_coding MGP_C57BL6NJ_T0013120.1 MGP_C57BL6NJ_G0011165.1 mouse_genomes_project 12 64189308 64190421 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034806.1 MGP_C57BL6NJ_G0019957.1 mouse_genomes_project 12 1131404 1137471 + MGP_C57BL6NJ_P0034806 Ptrhd1 protein_coding protein_coding MGP_C57BL6NJ_T0000354.1 MGP_C57BL6NJ_G0000273.1 mouse_genomes_project 12 120620731 120621022 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036233.1 MGP_C57BL6NJ_G0020449.1 mouse_genomes_project 12 109000790 109025875 - MGP_C57BL6NJ_P0036233 protein_coding protein_coding MGP_C57BL6NJ_T0000472.1 MGP_C57BL6NJ_G0000391.1 mouse_genomes_project 12 60193885 60193954 + mt-Ti Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0035084.1 MGP_C57BL6NJ_G0020061.1 mouse_genomes_project 12 31323614 31331442 + MGP_C57BL6NJ_P0035084 Ccdc71l protein_coding protein_coding MGP_C57BL6NJ_T0000027.1 MGP_C57BL6NJ_G0000019.1 mouse_genomes_project 12 119504074 119504086 - IG_D_gene processed_transcript MGP_C57BL6NJ_T0036188.1 MGP_C57BL6NJ_G0020435.1 mouse_genomes_project 12 108126368 108132345 - Prima1 protein_coding processed_transcript MGP_C57BL6NJ_T0036189.1 MGP_C57BL6NJ_G0020435.1 mouse_genomes_project 12 108126368 108171613 - MGP_C57BL6NJ_P0036189 Prima1 protein_coding protein_coding MGP_C57BL6NJ_T0036190.1 MGP_C57BL6NJ_G0020435.1 mouse_genomes_project 12 108126368 108171609 - MGP_C57BL6NJ_P0036190 Prima1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036191.1 MGP_C57BL6NJ_G0020435.1 mouse_genomes_project 12 108126728 108171591 - MGP_C57BL6NJ_P0036191 Prima1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036192.1 MGP_C57BL6NJ_G0020435.1 mouse_genomes_project 12 108165101 108165487 - Prima1 protein_coding processed_transcript MGP_C57BL6NJ_T0034837.1 MGP_C57BL6NJ_G0019973.1 mouse_genomes_project 12 5378600 5459139 + MGP_C57BL6NJ_P0034837 Ldah protein_coding protein_coding MGP_C57BL6NJ_T0003558.1 MGP_C57BL6NJ_G0003253.1 mouse_genomes_project 12 84058536 84073466 + Gm3693 antisense antisense MGP_C57BL6NJ_T0013118.1 MGP_C57BL6NJ_G0011163.1 mouse_genomes_project 12 62490003 62490976 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000007.1 MGP_C57BL6NJ_G0000005.1 mouse_genomes_project 12 119337740 119341346 - MGP_C57BL6NJ_P0000007 Ighg2c IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000008.1 MGP_C57BL6NJ_G0000005.1 mouse_genomes_project 12 119339700 119341348 - MGP_C57BL6NJ_P0000008 Ighg2c IG_C_gene IG_C_gene MGP_C57BL6NJ_T0003537.1 MGP_C57BL6NJ_G0003236.1 mouse_genomes_project 12 28833782 28836239 + Gm15691 antisense antisense MGP_C57BL6NJ_T0035122.1 MGP_C57BL6NJ_G0020076.1 mouse_genomes_project 12 35093255 35117360 + MGP_C57BL6NJ_P0035122 Agr3 protein_coding protein_coding MGP_C57BL6NJ_T0035123.1 MGP_C57BL6NJ_G0020076.1 mouse_genomes_project 12 35093257 35096020 + MGP_C57BL6NJ_P0035123 Agr3 protein_coding protein_coding MGP_C57BL6NJ_T0010036.1 MGP_C57BL6NJ_G0008121.1 mouse_genomes_project 12 115238647 115238738 + Mir431 miRNA miRNA MGP_C57BL6NJ_T0034901.1 MGP_C57BL6NJ_G0020001.1 mouse_genomes_project 12 14505529 14512382 + MGP_C57BL6NJ_P0034901 Ntsr2 protein_coding protein_coding MGP_C57BL6NJ_T0000038.1 MGP_C57BL6NJ_G0000030.1 mouse_genomes_project 12 119609751 119609768 - MGP_C57BL6NJ_P0000038 Ighd3-1 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0101143.1 MGP_C57BL6NJ_G0039189.1 mouse_genomes_project 12 115301969 115302042 + DQ267101 snoRNA snoRNA MGP_C57BL6NJ_T0099831.1 MGP_C57BL6NJ_G0037877.1 mouse_genomes_project 12 55336270 55336434 - Gm23804 snRNA snRNA MGP_C57BL6NJ_T0000380.1 MGP_C57BL6NJ_G0000299.1 mouse_genomes_project 12 121689220 121689517 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000099.1 MGP_C57BL6NJ_G0000079.1 mouse_genomes_project 12 120326472 120326766 - MGP_C57BL6NJ_P0000099 Ighv9-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000100.1 MGP_C57BL6NJ_G0000079.1 mouse_genomes_project 12 120326472 120326903 - MGP_C57BL6NJ_P0000100 Ighv9-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0006608.1 MGP_C57BL6NJ_G0005501.1 mouse_genomes_project 12 90891681 90891814 - Gm29362 lincRNA lincRNA MGP_C57BL6NJ_T0013152.1 MGP_C57BL6NJ_G0011197.1 mouse_genomes_project 12 111873082 111874572 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036105.1 MGP_C57BL6NJ_G0020406.1 mouse_genomes_project 12 104723239 104760900 - MGP_C57BL6NJ_P0036105 Nrde2 protein_coding protein_coding MGP_C57BL6NJ_T0036063.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103070935 103115089 + MGP_C57BL6NJ_P0036063 Spata7 protein_coding protein_coding MGP_C57BL6NJ_T0036064.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103070940 103081412 + Spata7 protein_coding retained_intron MGP_C57BL6NJ_T0036065.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103070945 103115089 + MGP_C57BL6NJ_P0036065 Spata7 protein_coding protein_coding MGP_C57BL6NJ_T0036066.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103070968 103075526 + Spata7 protein_coding retained_intron MGP_C57BL6NJ_T0036067.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103070975 103115086 + MGP_C57BL6NJ_P0036067 Spata7 protein_coding protein_coding MGP_C57BL6NJ_T0036068.1 MGP_C57BL6NJ_G0020396.1 mouse_genomes_project 12 103109175 103114552 + Spata7 protein_coding retained_intron MGP_C57BL6NJ_T0000341.1 MGP_C57BL6NJ_G0000260.1 mouse_genomes_project 12 120068662 120069082 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0013124.1 MGP_C57BL6NJ_G0011169.1 mouse_genomes_project 12 76183520 76183826 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036239.1 MGP_C57BL6NJ_G0020451.1 mouse_genomes_project 12 109062472 109081277 - MGP_C57BL6NJ_P0036239 Serpina9 protein_coding protein_coding MGP_C57BL6NJ_T0036240.1 MGP_C57BL6NJ_G0020451.1 mouse_genomes_project 12 109075944 109081380 - MGP_C57BL6NJ_P0036240 Serpina9 protein_coding protein_coding MGP_C57BL6NJ_T0036367.1 MGP_C57BL6NJ_G0020502.1 mouse_genomes_project 12 116185586 116324324 + MGP_C57BL6NJ_P0036367 Ppp2r5c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036368.1 MGP_C57BL6NJ_G0020502.1 mouse_genomes_project 12 116230623 116335844 + MGP_C57BL6NJ_P0036368 Ppp2r5c protein_coding protein_coding MGP_C57BL6NJ_T0036369.1 MGP_C57BL6NJ_G0020502.1 mouse_genomes_project 12 116230623 116335844 + MGP_C57BL6NJ_P0036369 Ppp2r5c protein_coding protein_coding MGP_C57BL6NJ_T0013171.1 MGP_C57BL6NJ_G0011216.1 mouse_genomes_project 12 122364979 122365632 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000337.1 MGP_C57BL6NJ_G0000256.1 mouse_genomes_project 12 119947004 119947335 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0099823.1 MGP_C57BL6NJ_G0037869.1 mouse_genomes_project 12 53032636 53032743 + Gm24859 snRNA snRNA MGP_C57BL6NJ_T0035619.1 MGP_C57BL6NJ_G0020264.1 mouse_genomes_project 12 81506838 81526253 - MGP_C57BL6NJ_P0035619 Plek2 protein_coding protein_coding MGP_C57BL6NJ_T0000080.1 MGP_C57BL6NJ_G0000064.1 mouse_genomes_project 12 119989624 119990063 - MGP_C57BL6NJ_P0000080 Ighv2-7 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000149.1 MGP_C57BL6NJ_G0000112.1 mouse_genomes_project 12 121342685 121342979 - MGP_C57BL6NJ_P0000149 Ighv1-47 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000150.1 MGP_C57BL6NJ_G0000112.1 mouse_genomes_project 12 121342685 121343158 - MGP_C57BL6NJ_P0000150 Ighv1-47 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035958.1 MGP_C57BL6NJ_G0020365.1 mouse_genomes_project 12 90440819 90514752 + MGP_C57BL6NJ_P0035958 Tmem63c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035959.1 MGP_C57BL6NJ_G0020365.1 mouse_genomes_project 12 90447201 90514747 + MGP_C57BL6NJ_P0035959 Tmem63c protein_coding protein_coding MGP_C57BL6NJ_T0035960.1 MGP_C57BL6NJ_G0020365.1 mouse_genomes_project 12 90447473 90514742 + MGP_C57BL6NJ_P0035960 Tmem63c protein_coding protein_coding MGP_C57BL6NJ_T0035961.1 MGP_C57BL6NJ_G0020365.1 mouse_genomes_project 12 90447525 90482537 + MGP_C57BL6NJ_P0035961 Tmem63c protein_coding protein_coding MGP_C57BL6NJ_T0035962.1 MGP_C57BL6NJ_G0020365.1 mouse_genomes_project 12 90462114 90514750 + MGP_C57BL6NJ_P0035962 Tmem63c protein_coding protein_coding MGP_C57BL6NJ_T0036576.1 MGP_C57BL6NJ_G0020572.1 mouse_genomes_project 12 124597981 124948199 - MGP_C57BL6NJ_P0036576 Dnah11 protein_coding protein_coding MGP_C57BL6NJ_T0036577.1 MGP_C57BL6NJ_G0020572.1 mouse_genomes_project 12 124597981 124799289 - MGP_C57BL6NJ_P0036577 Dnah11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036578.1 MGP_C57BL6NJ_G0020572.1 mouse_genomes_project 12 124624914 124638620 - Dnah11 protein_coding retained_intron MGP_C57BL6NJ_T0036579.1 MGP_C57BL6NJ_G0020572.1 mouse_genomes_project 12 124624930 124638846 - Dnah11 protein_coding processed_transcript MGP_C57BL6NJ_T0035309.1 MGP_C57BL6NJ_G0020154.1 mouse_genomes_project 12 59098571 59100687 + MGP_C57BL6NJ_P0035309 Sstr1 protein_coding protein_coding MGP_C57BL6NJ_T0035310.1 MGP_C57BL6NJ_G0020154.1 mouse_genomes_project 12 59098603 59101237 + MGP_C57BL6NJ_P0035310 Sstr1 protein_coding protein_coding MGP_C57BL6NJ_T0035388.1 MGP_C57BL6NJ_G0020181.1 mouse_genomes_project 12 71058192 71084260 - MGP_C57BL6NJ_P0035388 Pole2 protein_coding protein_coding MGP_C57BL6NJ_T0003550.1 MGP_C57BL6NJ_G0003247.1 mouse_genomes_project 12 71131406 71137068 - Gm15561 antisense antisense MGP_C57BL6NJ_T0035065.1 MGP_C57BL6NJ_G0020056.1 mouse_genomes_project 12 30546604 30851460 + MGP_C57BL6NJ_P0035065 Cog5 protein_coding protein_coding MGP_C57BL6NJ_T0035069.1 MGP_C57BL6NJ_G0020056.1 mouse_genomes_project 12 30655259 30837754 + MGP_C57BL6NJ_P0035069 Cog5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013168.1 MGP_C57BL6NJ_G0011213.1 mouse_genomes_project 12 122092527 122093676 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000359.1 MGP_C57BL6NJ_G0000278.1 mouse_genomes_project 12 120870274 120870567 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035573.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78797908 78810583 - MGP_C57BL6NJ_P0035573 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0035574.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78801909 78823452 - MGP_C57BL6NJ_P0035574 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0035575.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78801953 78822987 - MGP_C57BL6NJ_P0035575 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0035576.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78801954 78823590 - MGP_C57BL6NJ_P0035576 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0035577.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78803035 78823381 - MGP_C57BL6NJ_P0035577 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0035578.1 MGP_C57BL6NJ_G0020245.1 mouse_genomes_project 12 78803152 78823452 - MGP_C57BL6NJ_P0035578 Zbtb25 protein_coding protein_coding MGP_C57BL6NJ_T0017759.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32095305 32132350 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017760.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32109545 32131673 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017761.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32116565 32132350 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017762.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32119344 32132361 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017763.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32120078 32124321 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017764.1 MGP_C57BL6NJ_G0015621.1 mouse_genomes_project 12 32131908 32132360 - F730043M19Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0034985.1 MGP_C57BL6NJ_G0020024.1 mouse_genomes_project 12 23078504 23084410 + MGP_C57BL6NJ_P0034985 Rrm2 protein_coding protein_coding MGP_C57BL6NJ_T0034986.1 MGP_C57BL6NJ_G0020024.1 mouse_genomes_project 12 23078819 23079853 + Rrm2 protein_coding retained_intron MGP_C57BL6NJ_T0034987.1 MGP_C57BL6NJ_G0020024.1 mouse_genomes_project 12 23079015 23082033 + MGP_C57BL6NJ_P0034987 Rrm2 protein_coding protein_coding MGP_C57BL6NJ_T0034988.1 MGP_C57BL6NJ_G0020024.1 mouse_genomes_project 12 23079292 23083605 + MGP_C57BL6NJ_P0034988 Rrm2 protein_coding protein_coding MGP_C57BL6NJ_T0034833.1 MGP_C57BL6NJ_G0019972.1 mouse_genomes_project 12 5134053 5144129 + MGP_C57BL6NJ_P0034833 Apob protein_coding protein_coding MGP_C57BL6NJ_T0034834.1 MGP_C57BL6NJ_G0019972.1 mouse_genomes_project 12 5134053 5174467 + MGP_C57BL6NJ_P0034834 Apob protein_coding protein_coding MGP_C57BL6NJ_T0034835.1 MGP_C57BL6NJ_G0019972.1 mouse_genomes_project 12 5134184 5174132 + MGP_C57BL6NJ_P0034835 Apob protein_coding protein_coding MGP_C57BL6NJ_T0034836.1 MGP_C57BL6NJ_G0019972.1 mouse_genomes_project 12 5169990 5174467 + MGP_C57BL6NJ_P0034836 Apob protein_coding protein_coding MGP_C57BL6NJ_T0035532.1 MGP_C57BL6NJ_G0020231.1 mouse_genomes_project 12 76186813 76208495 + MGP_C57BL6NJ_P0035532 Snapc1 protein_coding protein_coding MGP_C57BL6NJ_T0006606.1 MGP_C57BL6NJ_G0005499.1 mouse_genomes_project 12 90296048 90297212 - Gm26698 lincRNA lincRNA MGP_C57BL6NJ_T0000034.1 MGP_C57BL6NJ_G0000026.1 mouse_genomes_project 12 119536265 119536294 - MGP_C57BL6NJ_P0000034 Ighd5-7 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0000103.1 MGP_C57BL6NJ_G0000082.1 mouse_genomes_project 12 120392581 120393046 - MGP_C57BL6NJ_P0000103 Ighv7-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010017.1 MGP_C57BL6NJ_G0008102.1 mouse_genomes_project 12 105687272 105687368 - Mir1190 miRNA miRNA MGP_C57BL6NJ_T0010045.1 MGP_C57BL6NJ_G0008130.1 mouse_genomes_project 12 115267321 115267408 + Gm23912 miRNA miRNA MGP_C57BL6NJ_T0101136.1 MGP_C57BL6NJ_G0039182.1 mouse_genomes_project 12 115280282 115280357 + Gm24564 snoRNA snoRNA MGP_C57BL6NJ_T0036137.1 MGP_C57BL6NJ_G0020416.1 mouse_genomes_project 12 106579558 106655832 - MGP_C57BL6NJ_P0036137 Fbln5 protein_coding protein_coding MGP_C57BL6NJ_T0034993.1 MGP_C57BL6NJ_G0020027.1 mouse_genomes_project 12 23515590 23517882 - MGP_C57BL6NJ_P0034993 Id2 protein_coding protein_coding MGP_C57BL6NJ_T0035240.1 MGP_C57BL6NJ_G0020123.1 mouse_genomes_project 12 54688656 54719969 - MGP_C57BL6NJ_P0035240 Egln3 protein_coding protein_coding MGP_C57BL6NJ_T0001000.1 MGP_C57BL6NJ_G0000910.1 mouse_genomes_project 12 115320481 115329390 + TEC TEC MGP_C57BL6NJ_T0003556.1 MGP_C57BL6NJ_G0003251.1 mouse_genomes_project 12 82656722 82657027 + Gm28056 antisense antisense MGP_C57BL6NJ_T0034828.1 MGP_C57BL6NJ_G0019969.1 mouse_genomes_project 12 1843539 1875581 - MGP_C57BL6NJ_P0034828 Ubxn2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034829.1 MGP_C57BL6NJ_G0019969.1 mouse_genomes_project 12 1844059 1875678 - MGP_C57BL6NJ_P0034829 Ubxn2a protein_coding protein_coding MGP_C57BL6NJ_T0010074.1 MGP_C57BL6NJ_G0008159.1 mouse_genomes_project 12 115382375 115382449 + Mir539 miRNA miRNA MGP_C57BL6NJ_T0011591.1 MGP_C57BL6NJ_G0009676.1 mouse_genomes_project 12 73792453 73792756 + Gm22959 misc_RNA misc_RNA MGP_C57BL6NJ_T0013105.1 MGP_C57BL6NJ_G0011150.1 mouse_genomes_project 12 44776641 44779544 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006596.1 MGP_C57BL6NJ_G0005489.1 mouse_genomes_project 12 82821172 82833481 - 2310015A10Rik lincRNA lincRNA MGP_C57BL6NJ_T0010028.1 MGP_C57BL6NJ_G0008113.1 mouse_genomes_project 12 115220106 115220197 + Mir673 miRNA miRNA MGP_C57BL6NJ_T0099842.1 MGP_C57BL6NJ_G0037888.1 mouse_genomes_project 12 71948994 71949097 - Gm23579 snRNA snRNA MGP_C57BL6NJ_T0010054.1 MGP_C57BL6NJ_G0008139.1 mouse_genomes_project 12 115366419 115366539 + Mir1197 miRNA miRNA MGP_C57BL6NJ_T0035230.1 MGP_C57BL6NJ_G0020118.1 mouse_genomes_project 12 52432580 52437599 - MGP_C57BL6NJ_P0035230 Gpr33 protein_coding protein_coding MGP_C57BL6NJ_T0035496.1 MGP_C57BL6NJ_G0020218.1 mouse_genomes_project 12 74768261 74786409 - MGP_C57BL6NJ_P0035496 Dhrs7 protein_coding protein_coding MGP_C57BL6NJ_T0003565.1 MGP_C57BL6NJ_G0003260.1 mouse_genomes_project 12 88313002 88314857 + Prox2os antisense antisense MGP_C57BL6NJ_T0010032.1 MGP_C57BL6NJ_G0008117.1 mouse_genomes_project 12 115234263 115234330 + Mir540 miRNA miRNA MGP_C57BL6NJ_T0035932.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89692854 89877957 + MGP_C57BL6NJ_P0035932 Esrrb protein_coding protein_coding MGP_C57BL6NJ_T0035933.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89755168 89877954 + MGP_C57BL6NJ_P0035933 Esrrb protein_coding protein_coding MGP_C57BL6NJ_T0035934.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89755168 89869581 + MGP_C57BL6NJ_P0035934 Esrrb protein_coding protein_coding MGP_C57BL6NJ_T0035935.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89755407 89876129 + MGP_C57BL6NJ_P0035935 Esrrb protein_coding protein_coding MGP_C57BL6NJ_T0035936.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89811567 89875394 + MGP_C57BL6NJ_P0035936 Esrrb protein_coding protein_coding MGP_C57BL6NJ_T0035937.1 MGP_C57BL6NJ_G0020358.1 mouse_genomes_project 12 89858467 89864026 + Esrrb protein_coding processed_transcript MGP_C57BL6NJ_T0036470.1 MGP_C57BL6NJ_G0020533.1 mouse_genomes_project 12 117966662 117968869 - MGP_C57BL6NJ_P0036470 Rd3l protein_coding protein_coding MGP_C57BL6NJ_T0036471.1 MGP_C57BL6NJ_G0020533.1 mouse_genomes_project 12 117966663 117967695 - MGP_C57BL6NJ_P0036471 Rd3l protein_coding protein_coding MGP_C57BL6NJ_T0036472.1 MGP_C57BL6NJ_G0020533.1 mouse_genomes_project 12 117966696 117968606 - MGP_C57BL6NJ_P0036472 Rd3l protein_coding protein_coding MGP_C57BL6NJ_T0036473.1 MGP_C57BL6NJ_G0020533.1 mouse_genomes_project 12 117966740 117968021 - MGP_C57BL6NJ_P0036473 Rd3l protein_coding protein_coding MGP_C57BL6NJ_T0036474.1 MGP_C57BL6NJ_G0020533.1 mouse_genomes_project 12 117966742 117968654 - MGP_C57BL6NJ_P0036474 Rd3l protein_coding protein_coding MGP_C57BL6NJ_T0098973.1 MGP_C57BL6NJ_G0037037.1 mouse_genomes_project 12 1254040 1254154 + Gm23756 rRNA rRNA MGP_C57BL6NJ_T0035677.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84188029 84395210 - MGP_C57BL6NJ_P0035677 Gm20498 protein_coding protein_coding MGP_C57BL6NJ_T0035682.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84326897 84395187 - MGP_C57BL6NJ_P0035682 Gm20498 protein_coding protein_coding MGP_C57BL6NJ_T0035689.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84330853 84395182 - MGP_C57BL6NJ_P0035689 Gm20498 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035690.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84330889 84395066 - Gm20498 protein_coding processed_transcript MGP_C57BL6NJ_T0035691.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84330911 84395182 - Gm20498 protein_coding processed_transcript MGP_C57BL6NJ_T0035693.1 MGP_C57BL6NJ_G0020288.1 mouse_genomes_project 12 84338440 84395182 - Gm20498 protein_coding processed_transcript MGP_C57BL6NJ_T0035231.1 MGP_C57BL6NJ_G0020119.1 mouse_genomes_project 12 52501784 52716345 + MGP_C57BL6NJ_P0035231 Nubpl protein_coding protein_coding MGP_C57BL6NJ_T0035232.1 MGP_C57BL6NJ_G0020119.1 mouse_genomes_project 12 52501803 52552547 + Nubpl protein_coding retained_intron MGP_C57BL6NJ_T0035233.1 MGP_C57BL6NJ_G0020119.1 mouse_genomes_project 12 52501808 52508718 + Nubpl protein_coding retained_intron MGP_C57BL6NJ_T0035234.1 MGP_C57BL6NJ_G0020119.1 mouse_genomes_project 12 52536114 52706784 + MGP_C57BL6NJ_P0035234 Nubpl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035235.1 MGP_C57BL6NJ_G0020119.1 mouse_genomes_project 12 52575853 52674409 + Nubpl protein_coding processed_transcript MGP_C57BL6NJ_T0009985.1 MGP_C57BL6NJ_G0008070.1 mouse_genomes_project 12 34321892 34321979 - Mir680-3 miRNA miRNA MGP_C57BL6NJ_T0099840.1 MGP_C57BL6NJ_G0037886.1 mouse_genomes_project 12 71007771 71007875 - Gm24499 snRNA snRNA MGP_C57BL6NJ_T0035117.1 MGP_C57BL6NJ_G0020074.1 mouse_genomes_project 12 34165803 34271480 + MGP_C57BL6NJ_P0035117 Snx13 protein_coding protein_coding MGP_C57BL6NJ_T0035118.1 MGP_C57BL6NJ_G0020074.1 mouse_genomes_project 12 34165814 34257866 + MGP_C57BL6NJ_P0035118 Snx13 protein_coding protein_coding MGP_C57BL6NJ_T0010094.1 MGP_C57BL6NJ_G0008179.1 mouse_genomes_project 12 118092810 118092895 + Mir3073a miRNA miRNA MGP_C57BL6NJ_T0006575.1 MGP_C57BL6NJ_G0005475.1 mouse_genomes_project 12 32095556 32123645 + Gm16267 lincRNA lincRNA MGP_C57BL6NJ_T0035357.1 MGP_C57BL6NJ_G0020167.1 mouse_genomes_project 12 66456504 66481020 - MGP_C57BL6NJ_P0035357 Klhl28 protein_coding protein_coding MGP_C57BL6NJ_T0006601.1 MGP_C57BL6NJ_G0005494.1 mouse_genomes_project 12 86690330 86691295 + Gm26623 lincRNA lincRNA MGP_C57BL6NJ_T0010069.1 MGP_C57BL6NJ_G0008154.1 mouse_genomes_project 12 115378027 115378095 + Mir376a miRNA miRNA MGP_C57BL6NJ_T0036507.1 MGP_C57BL6NJ_G0020545.1 mouse_genomes_project 12 118797565 118808293 + MGP_C57BL6NJ_P0036507 Pld4 protein_coding protein_coding MGP_C57BL6NJ_T0010105.1 MGP_C57BL6NJ_G0008190.1 mouse_genomes_project 12 122759567 122759688 - Gm44372 miRNA miRNA MGP_C57BL6NJ_T0017800.1 MGP_C57BL6NJ_G0015636.1 mouse_genomes_project 12 122712057 122746020 - Gm20658 processed_transcript processed_transcript MGP_C57BL6NJ_T0017801.1 MGP_C57BL6NJ_G0015636.1 mouse_genomes_project 12 122712080 122746147 - Gm20658 processed_transcript processed_transcript MGP_C57BL6NJ_T0035518.1 MGP_C57BL6NJ_G0020225.1 mouse_genomes_project 12 75453833 75460135 - MGP_C57BL6NJ_P0035518 Trmt5 protein_coding protein_coding MGP_C57BL6NJ_T0099849.1 MGP_C57BL6NJ_G0037895.1 mouse_genomes_project 12 83371405 83371509 - Gm23817 snRNA snRNA MGP_C57BL6NJ_T0006642.1 MGP_C57BL6NJ_G0005528.1 mouse_genomes_project 12 115185499 115186376 + lincRNA lincRNA MGP_C57BL6NJ_T0000145.1 MGP_C57BL6NJ_G0000110.1 mouse_genomes_project 12 121282190 121282622 - MGP_C57BL6NJ_P0000145 Ighv1-42 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000146.1 MGP_C57BL6NJ_G0000110.1 mouse_genomes_project 12 121282190 121282484 - MGP_C57BL6NJ_P0000146 Ighv1-42 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010034.1 MGP_C57BL6NJ_G0008119.1 mouse_genomes_project 12 115236126 115236215 + Mir3070a miRNA miRNA MGP_C57BL6NJ_T0035845.1 MGP_C57BL6NJ_G0020333.1 mouse_genomes_project 12 87978278 87980098 + MGP_C57BL6NJ_P0035845 Isca2 protein_coding protein_coding MGP_C57BL6NJ_T0003539.1 MGP_C57BL6NJ_G0003238.1 mouse_genomes_project 12 32178477 32215671 - Atxn7l1os1 antisense antisense MGP_C57BL6NJ_T0035035.1 MGP_C57BL6NJ_G0020046.1 mouse_genomes_project 12 29727023 29779438 + Sh3yl1 protein_coding retained_intron MGP_C57BL6NJ_T0035036.1 MGP_C57BL6NJ_G0020046.1 mouse_genomes_project 12 29727023 29779582 + MGP_C57BL6NJ_P0035036 Sh3yl1 protein_coding protein_coding MGP_C57BL6NJ_T0035037.1 MGP_C57BL6NJ_G0020046.1 mouse_genomes_project 12 29727047 29779571 + MGP_C57BL6NJ_P0035037 Sh3yl1 protein_coding protein_coding MGP_C57BL6NJ_T0035038.1 MGP_C57BL6NJ_G0020046.1 mouse_genomes_project 12 29727542 29779576 + Sh3yl1 protein_coding processed_transcript MGP_C57BL6NJ_T0035705.1 MGP_C57BL6NJ_G0020297.1 mouse_genomes_project 12 84744745 84892434 + MGP_C57BL6NJ_P0035705 Pcnx protein_coding protein_coding MGP_C57BL6NJ_T0035706.1 MGP_C57BL6NJ_G0020297.1 mouse_genomes_project 12 84745087 84892436 + MGP_C57BL6NJ_P0035706 Pcnx protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035317.1 MGP_C57BL6NJ_G0020157.1 mouse_genomes_project 12 59912856 59929543 + MGP_C57BL6NJ_P0035317 Gemin2 protein_coding protein_coding MGP_C57BL6NJ_T0035318.1 MGP_C57BL6NJ_G0020157.1 mouse_genomes_project 12 59912917 59929472 + Gemin2 protein_coding retained_intron MGP_C57BL6NJ_T0035319.1 MGP_C57BL6NJ_G0020157.1 mouse_genomes_project 12 59925631 59928892 + Gemin2 protein_coding retained_intron MGP_C57BL6NJ_T0013135.1 MGP_C57BL6NJ_G0011180.1 mouse_genomes_project 12 90088698 90089157 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099861.1 MGP_C57BL6NJ_G0037907.1 mouse_genomes_project 12 123124343 123124407 - Gm27649 snRNA snRNA MGP_C57BL6NJ_T0034816.1 MGP_C57BL6NJ_G0019965.1 mouse_genomes_project 12 1773417 1783478 + MGP_C57BL6NJ_P0034816 Sf3b6 protein_coding protein_coding MGP_C57BL6NJ_T0000338.1 MGP_C57BL6NJ_G0000257.1 mouse_genomes_project 12 119974101 119974514 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000071.1 MGP_C57BL6NJ_G0000057.1 mouse_genomes_project 12 119715370 119715830 - MGP_C57BL6NJ_P0000071 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101156.1 MGP_C57BL6NJ_G0039202.1 mouse_genomes_project 12 115339816 115339888 + Gm25854 snoRNA snoRNA MGP_C57BL6NJ_T0036330.1 MGP_C57BL6NJ_G0020491.1 mouse_genomes_project 12 114095753 114235785 + MGP_C57BL6NJ_P0036330 Evl protein_coding protein_coding MGP_C57BL6NJ_T0036331.1 MGP_C57BL6NJ_G0020491.1 mouse_genomes_project 12 114095753 114235785 + MGP_C57BL6NJ_P0036331 Evl protein_coding protein_coding MGP_C57BL6NJ_T0036332.1 MGP_C57BL6NJ_G0020491.1 mouse_genomes_project 12 114148600 114235785 + MGP_C57BL6NJ_P0036332 Evl protein_coding protein_coding MGP_C57BL6NJ_T0036333.1 MGP_C57BL6NJ_G0020491.1 mouse_genomes_project 12 114179446 114235785 + MGP_C57BL6NJ_P0036333 Evl protein_coding protein_coding MGP_C57BL6NJ_T0035410.1 MGP_C57BL6NJ_G0020191.1 mouse_genomes_project 12 71682400 71729236 - MGP_C57BL6NJ_P0035410 Cdkl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035877.1 MGP_C57BL6NJ_G0020341.1 mouse_genomes_project 12 88368286 88383987 - MGP_C57BL6NJ_P0035877 Rps6kl1 protein_coding protein_coding MGP_C57BL6NJ_T0102785.1 MGP_C57BL6NJ_G0040579.1 mouse_genomes_project 12 109459778 109465310 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036486.1 MGP_C57BL6NJ_G0020539.1 mouse_genomes_project 12 118607289 118639631 + MGP_C57BL6NJ_P0036486 Inf2 protein_coding protein_coding MGP_C57BL6NJ_T0036487.1 MGP_C57BL6NJ_G0020539.1 mouse_genomes_project 12 118607319 118639636 + MGP_C57BL6NJ_P0036487 Inf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036488.1 MGP_C57BL6NJ_G0020539.1 mouse_genomes_project 12 118607323 118639636 + MGP_C57BL6NJ_P0036488 Inf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010014.1 MGP_C57BL6NJ_G0008099.1 mouse_genomes_project 12 94967465 94967577 + Gm44370 miRNA miRNA MGP_C57BL6NJ_T0034899.1 MGP_C57BL6NJ_G0020000.1 mouse_genomes_project 12 14392200 14446077 - MGP_C57BL6NJ_P0034899 Lpin1 protein_coding protein_coding MGP_C57BL6NJ_T0034900.1 MGP_C57BL6NJ_G0020000.1 mouse_genomes_project 12 14392200 14446077 - MGP_C57BL6NJ_P0034900 Lpin1 protein_coding protein_coding MGP_C57BL6NJ_T0035279.1 MGP_C57BL6NJ_G0020142.1 mouse_genomes_project 12 56291107 56294209 + MGP_C57BL6NJ_P0035279 Insm2 protein_coding protein_coding MGP_C57BL6NJ_T0013131.1 MGP_C57BL6NJ_G0011176.1 mouse_genomes_project 12 84449622 84450058 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035536.1 MGP_C57BL6NJ_G0020234.1 mouse_genomes_project 12 77208688 77538574 - MGP_C57BL6NJ_P0035536 Kcnh5 protein_coding protein_coding MGP_C57BL6NJ_T0006558.1 MGP_C57BL6NJ_G0005462.1 mouse_genomes_project 12 6888284 6893634 - 1700022H16Rik lincRNA lincRNA MGP_C57BL6NJ_T0034955.1 MGP_C57BL6NJ_G0020015.1 mouse_genomes_project 12 19539514 19569640 + MGP_C57BL6NJ_P0034955 Cpsf3 protein_coding protein_coding MGP_C57BL6NJ_T0035255.1 MGP_C57BL6NJ_G0020130.1 mouse_genomes_project 12 55667687 55706936 - MGP_C57BL6NJ_P0035255 2700097O09Rik protein_coding protein_coding MGP_C57BL6NJ_T0035256.1 MGP_C57BL6NJ_G0020130.1 mouse_genomes_project 12 55667702 55676124 - 2700097O09Rik protein_coding retained_intron MGP_C57BL6NJ_T0035257.1 MGP_C57BL6NJ_G0020130.1 mouse_genomes_project 12 55675776 55706934 - 2700097O09Rik protein_coding retained_intron MGP_C57BL6NJ_T0000189.1 MGP_C57BL6NJ_G0000140.1 mouse_genomes_project 12 122559671 122560141 - MGP_C57BL6NJ_P0000189 Ighv1-81 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035321.1 MGP_C57BL6NJ_G0020159.1 mouse_genomes_project 12 59983498 59990687 + MGP_C57BL6NJ_P0035321 Pnn protein_coding protein_coding MGP_C57BL6NJ_T0000188.1 MGP_C57BL6NJ_G0000139.1 mouse_genomes_project 12 122502151 122502584 - MGP_C57BL6NJ_P0000188 Ighv1-80 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010053.1 MGP_C57BL6NJ_G0008138.1 mouse_genomes_project 12 115365905 115365966 + Mir380 miRNA miRNA MGP_C57BL6NJ_T0035699.1 MGP_C57BL6NJ_G0020294.1 mouse_genomes_project 12 84433764 84455147 - MGP_C57BL6NJ_P0035699 Med6 protein_coding protein_coding MGP_C57BL6NJ_T0035700.1 MGP_C57BL6NJ_G0020294.1 mouse_genomes_project 12 84433901 84434952 - Med6 protein_coding retained_intron MGP_C57BL6NJ_T0035701.1 MGP_C57BL6NJ_G0020294.1 mouse_genomes_project 12 84444660 84455194 - Med6 protein_coding retained_intron MGP_C57BL6NJ_T0034896.1 MGP_C57BL6NJ_G0019998.1 mouse_genomes_project 12 11842022 11846462 - MGP_C57BL6NJ_P0034896 Fam84a protein_coding protein_coding MGP_C57BL6NJ_T0035202.1 MGP_C57BL6NJ_G0020103.1 mouse_genomes_project 12 46648175 46785951 - MGP_C57BL6NJ_P0035202 Nova1 protein_coding protein_coding MGP_C57BL6NJ_T0035349.1 MGP_C57BL6NJ_G0020163.1 mouse_genomes_project 12 62669968 62771396 + Lrfn5 protein_coding processed_transcript MGP_C57BL6NJ_T0035350.1 MGP_C57BL6NJ_G0020163.1 mouse_genomes_project 12 62669985 62842007 + Lrfn5 protein_coding processed_transcript MGP_C57BL6NJ_T0035351.1 MGP_C57BL6NJ_G0020163.1 mouse_genomes_project 12 62670758 63032479 + MGP_C57BL6NJ_P0035351 Lrfn5 protein_coding protein_coding MGP_C57BL6NJ_T0035352.1 MGP_C57BL6NJ_G0020163.1 mouse_genomes_project 12 62670758 63018901 + MGP_C57BL6NJ_P0035352 Lrfn5 protein_coding protein_coding MGP_C57BL6NJ_T0035353.1 MGP_C57BL6NJ_G0020163.1 mouse_genomes_project 12 63030818 63032893 + Lrfn5 protein_coding retained_intron MGP_C57BL6NJ_T0036218.1 MGP_C57BL6NJ_G0020443.1 mouse_genomes_project 12 108400617 108407265 - MGP_C57BL6NJ_P0036218 Ifi27l2b protein_coding protein_coding MGP_C57BL6NJ_T0000163.1 MGP_C57BL6NJ_G0000122.1 mouse_genomes_project 12 121758496 121759070 - MGP_C57BL6NJ_P0000163 Ighv1-59 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035778.1 MGP_C57BL6NJ_G0020312.1 mouse_genomes_project 12 87145142 87153098 + MGP_C57BL6NJ_P0035778 Acot4 protein_coding protein_coding MGP_C57BL6NJ_T0035779.1 MGP_C57BL6NJ_G0020312.1 mouse_genomes_project 12 87145470 87150597 + Acot4 protein_coding retained_intron MGP_C57BL6NJ_T0101152.1 MGP_C57BL6NJ_G0039198.1 mouse_genomes_project 12 115333323 115333398 + AF357341 snoRNA snoRNA MGP_C57BL6NJ_T0036466.1 MGP_C57BL6NJ_G0020530.1 mouse_genomes_project 12 117797044 117885101 - MGP_C57BL6NJ_P0036466 Ppp1r13b protein_coding protein_coding MGP_C57BL6NJ_T0036467.1 MGP_C57BL6NJ_G0020530.1 mouse_genomes_project 12 117835697 117885086 - MGP_C57BL6NJ_P0036467 Ppp1r13b protein_coding protein_coding MGP_C57BL6NJ_T0000035.1 MGP_C57BL6NJ_G0000027.1 mouse_genomes_project 12 119536799 119536809 - MGP_C57BL6NJ_P0000035 Ighd5-5 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0009996.1 MGP_C57BL6NJ_G0008081.1 mouse_genomes_project 12 71015043 71015122 + miRNA miRNA MGP_C57BL6NJ_T0000036.1 MGP_C57BL6NJ_G0000028.1 mouse_genomes_project 12 119552284 119552301 - MGP_C57BL6NJ_P0000036 Ighd2-3 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0010093.1 MGP_C57BL6NJ_G0008178.1 mouse_genomes_project 12 116435366 116435469 + Gm27299 miRNA miRNA MGP_C57BL6NJ_T0010002.1 MGP_C57BL6NJ_G0008087.1 mouse_genomes_project 12 74588344 74588459 - Gm44392 miRNA miRNA MGP_C57BL6NJ_T0036365.1 MGP_C57BL6NJ_G0020501.1 mouse_genomes_project 12 116001615 116003645 + MGP_C57BL6NJ_P0036365 protein_coding protein_coding MGP_C57BL6NJ_T0036366.1 MGP_C57BL6NJ_G0020501.1 mouse_genomes_project 12 116001807 116003256 + MGP_C57BL6NJ_P0036366 protein_coding protein_coding MGP_C57BL6NJ_T0003576.1 MGP_C57BL6NJ_G0003269.1 mouse_genomes_project 12 114621780 114622249 + Gm28498 antisense antisense MGP_C57BL6NJ_T0013158.1 MGP_C57BL6NJ_G0011203.1 mouse_genomes_project 12 119214011 119214831 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000158.1 MGP_C57BL6NJ_G0000118.1 mouse_genomes_project 12 121678021 121678315 - MGP_C57BL6NJ_P0000158 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000372.1 MGP_C57BL6NJ_G0000291.1 mouse_genomes_project 12 121312499 121312933 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0006605.1 MGP_C57BL6NJ_G0005498.1 mouse_genomes_project 12 89615429 89630679 - 4732487G21Rik lincRNA lincRNA MGP_C57BL6NJ_T0035774.1 MGP_C57BL6NJ_G0020308.1 mouse_genomes_project 12 87036024 87038370 + MGP_C57BL6NJ_P0035774 2410016O06Rik protein_coding protein_coding MGP_C57BL6NJ_T0101159.1 MGP_C57BL6NJ_G0039205.1 mouse_genomes_project 12 117463292 117463419 + Snora28 snoRNA snoRNA MGP_C57BL6NJ_T0035544.1 MGP_C57BL6NJ_G0020238.1 mouse_genomes_project 12 78029847 78069518 - MGP_C57BL6NJ_P0035544 Wdr89 protein_coding protein_coding MGP_C57BL6NJ_T0035545.1 MGP_C57BL6NJ_G0020238.1 mouse_genomes_project 12 78030669 78069508 - MGP_C57BL6NJ_P0035545 Wdr89 protein_coding protein_coding MGP_C57BL6NJ_T0036323.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 113889054 114043915 + Eml1 protein_coding retained_intron MGP_C57BL6NJ_T0036324.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 113942480 114080499 + MGP_C57BL6NJ_P0036324 Eml1 protein_coding protein_coding MGP_C57BL6NJ_T0036325.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 113942742 114078467 + MGP_C57BL6NJ_P0036325 Eml1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036326.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 113942859 114080508 + MGP_C57BL6NJ_P0036326 Eml1 protein_coding protein_coding MGP_C57BL6NJ_T0036327.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 114001202 114080499 + Eml1 protein_coding processed_transcript MGP_C57BL6NJ_T0036328.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 114075806 114078362 + Eml1 protein_coding processed_transcript MGP_C57BL6NJ_T0036329.1 MGP_C57BL6NJ_G0020490.1 mouse_genomes_project 12 114075864 114080552 + Eml1 protein_coding processed_transcript MGP_C57BL6NJ_T0013107.1 MGP_C57BL6NJ_G0011152.1 mouse_genomes_project 12 50071695 50072690 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034989.1 MGP_C57BL6NJ_G0020025.1 mouse_genomes_project 12 23230683 23367803 + MGP_C57BL6NJ_P0034989 Mboat2 protein_coding protein_coding MGP_C57BL6NJ_T0034990.1 MGP_C57BL6NJ_G0020025.1 mouse_genomes_project 12 23230683 23367803 + MGP_C57BL6NJ_P0034990 Mboat2 protein_coding protein_coding MGP_C57BL6NJ_T0036058.1 MGP_C57BL6NJ_G0020392.1 mouse_genomes_project 12 99872570 99975217 + MGP_C57BL6NJ_P0036058 Flrt2 protein_coding protein_coding MGP_C57BL6NJ_T0036059.1 MGP_C57BL6NJ_G0020392.1 mouse_genomes_project 12 99875697 99971109 + MGP_C57BL6NJ_P0036059 Flrt2 protein_coding protein_coding MGP_C57BL6NJ_T0036541.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119197835 119205956 + MGP_C57BL6NJ_P0036541 4930427A07Rik protein_coding protein_coding MGP_C57BL6NJ_T0036542.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119197844 119198341 + 4930427A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0036543.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119197854 119207458 + MGP_C57BL6NJ_P0036543 4930427A07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036544.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119197870 119199004 + 4930427A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0036545.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119197920 119203227 + MGP_C57BL6NJ_P0036545 4930427A07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036546.1 MGP_C57BL6NJ_G0020560.1 mouse_genomes_project 12 119198985 119205959 + 4930427A07Rik protein_coding retained_intron MGP_C57BL6NJ_T0036138.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106672516 106761708 - MGP_C57BL6NJ_P0036138 Trip11 protein_coding protein_coding MGP_C57BL6NJ_T0036139.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106676010 106739161 - MGP_C57BL6NJ_P0036139 Trip11 protein_coding protein_coding MGP_C57BL6NJ_T0036140.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106716510 106728460 - MGP_C57BL6NJ_P0036140 Trip11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036141.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106731072 106761564 - MGP_C57BL6NJ_P0036141 Trip11 protein_coding protein_coding MGP_C57BL6NJ_T0036142.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106734590 106761581 - MGP_C57BL6NJ_P0036142 Trip11 protein_coding protein_coding MGP_C57BL6NJ_T0036143.1 MGP_C57BL6NJ_G0020417.1 mouse_genomes_project 12 106760716 106761596 - Trip11 protein_coding processed_transcript MGP_C57BL6NJ_T0009993.1 MGP_C57BL6NJ_G0008078.1 mouse_genomes_project 12 56531753 56531844 - Gm23394 miRNA miRNA MGP_C57BL6NJ_T0035547.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78234859 78301136 + MGP_C57BL6NJ_P0035547 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035548.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78235043 78543963 + MGP_C57BL6NJ_P0035548 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035549.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78235043 78543886 + MGP_C57BL6NJ_P0035549 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035550.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78235048 78312515 + Syne2 protein_coding retained_intron MGP_C57BL6NJ_T0035551.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78235054 78330461 + MGP_C57BL6NJ_P0035551 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035552.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78235075 78327487 + Syne2 protein_coding retained_intron MGP_C57BL6NJ_T0035553.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78271885 78300958 + MGP_C57BL6NJ_P0035553 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035554.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78330801 78335471 + Syne2 protein_coding retained_intron MGP_C57BL6NJ_T0035555.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78453795 78459311 + MGP_C57BL6NJ_P0035555 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035556.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78463109 78543957 + MGP_C57BL6NJ_P0035556 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035557.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78480277 78543886 + MGP_C57BL6NJ_P0035557 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035558.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78491379 78498222 + Syne2 protein_coding retained_intron MGP_C57BL6NJ_T0035559.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78503868 78527306 + MGP_C57BL6NJ_P0035559 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035560.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78514449 78527916 + MGP_C57BL6NJ_P0035560 Syne2 protein_coding protein_coding MGP_C57BL6NJ_T0035561.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78514732 78530851 + MGP_C57BL6NJ_P0035561 Syne2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035562.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78520629 78543963 + MGP_C57BL6NJ_P0035562 Syne2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035563.1 MGP_C57BL6NJ_G0020240.1 mouse_genomes_project 12 78533770 78538862 + Syne2 protein_coding retained_intron MGP_C57BL6NJ_T0036036.1 MGP_C57BL6NJ_G0020388.1 mouse_genomes_project 12 95256576 95395930 + MGP_C57BL6NJ_P0036036 Tshr protein_coding protein_coding MGP_C57BL6NJ_T0036037.1 MGP_C57BL6NJ_G0020388.1 mouse_genomes_project 12 95256582 95377961 + MGP_C57BL6NJ_P0036037 Tshr protein_coding protein_coding MGP_C57BL6NJ_T0036038.1 MGP_C57BL6NJ_G0020388.1 mouse_genomes_project 12 95393486 95394977 + MGP_C57BL6NJ_P0036038 Tshr protein_coding protein_coding MGP_C57BL6NJ_T0035654.1 MGP_C57BL6NJ_G0020282.1 mouse_genomes_project 12 83512689 83519185 - MGP_C57BL6NJ_P0035654 Ccdc177 protein_coding protein_coding MGP_C57BL6NJ_T0035629.1 MGP_C57BL6NJ_G0020270.1 mouse_genomes_project 12 81803574 81823225 - MGP_C57BL6NJ_P0035629 Rdh11 protein_coding protein_coding MGP_C57BL6NJ_T0035630.1 MGP_C57BL6NJ_G0020270.1 mouse_genomes_project 12 81804788 81821893 - MGP_C57BL6NJ_P0035630 Rdh11 protein_coding protein_coding MGP_C57BL6NJ_T0035631.1 MGP_C57BL6NJ_G0020270.1 mouse_genomes_project 12 81805402 81822725 - MGP_C57BL6NJ_P0035631 Rdh11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035266.1 MGP_C57BL6NJ_G0020137.1 mouse_genomes_project 12 55927009 55963718 - MGP_C57BL6NJ_P0035266 Ppp2r3c protein_coding protein_coding MGP_C57BL6NJ_T0013132.1 MGP_C57BL6NJ_G0011177.1 mouse_genomes_project 12 85498797 85499040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000031.1 MGP_C57BL6NJ_G0000023.1 mouse_genomes_project 12 119524206 119524235 - MGP_C57BL6NJ_P0000031 Ighd5-8 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0035977.1 MGP_C57BL6NJ_G0020374.1 mouse_genomes_project 12 90720720 90745427 - MGP_C57BL6NJ_P0035977 Ism2 protein_coding protein_coding MGP_C57BL6NJ_T0035978.1 MGP_C57BL6NJ_G0020374.1 mouse_genomes_project 12 90721764 90730692 - MGP_C57BL6NJ_P0035978 Ism2 protein_coding protein_coding MGP_C57BL6NJ_T0035979.1 MGP_C57BL6NJ_G0020374.1 mouse_genomes_project 12 90725967 90730628 - Ism2 protein_coding processed_transcript MGP_C57BL6NJ_T0035306.1 MGP_C57BL6NJ_G0020153.1 mouse_genomes_project 12 58433214 58488559 + MGP_C57BL6NJ_P0035306 protein_coding protein_coding MGP_C57BL6NJ_T0035307.1 MGP_C57BL6NJ_G0020153.1 mouse_genomes_project 12 58444868 58608830 + MGP_C57BL6NJ_P0035307 protein_coding protein_coding MGP_C57BL6NJ_T0035308.1 MGP_C57BL6NJ_G0020153.1 mouse_genomes_project 12 58518337 58520642 + MGP_C57BL6NJ_P0035308 protein_coding protein_coding MGP_C57BL6NJ_T0010066.1 MGP_C57BL6NJ_G0008151.1 mouse_genomes_project 12 115377378 115377462 + Mir654 miRNA miRNA MGP_C57BL6NJ_T0000132.1 MGP_C57BL6NJ_G0000102.1 mouse_genomes_project 12 120853748 120854182 - MGP_C57BL6NJ_P0000132 Ighv1-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035385.1 MGP_C57BL6NJ_G0020178.1 mouse_genomes_project 12 71039692 71042306 + MGP_C57BL6NJ_P0035385 Mgat2 protein_coding protein_coding MGP_C57BL6NJ_T0035025.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 28953124 29163224 - MGP_C57BL6NJ_P0035025 Sntg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035026.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 28953125 29163271 - MGP_C57BL6NJ_P0035026 Sntg2 protein_coding protein_coding MGP_C57BL6NJ_T0035027.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 28953631 29163161 - MGP_C57BL6NJ_P0035027 Sntg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035028.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 28953636 29163224 - MGP_C57BL6NJ_P0035028 Sntg2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035029.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 28973456 28979729 - Sntg2 protein_coding retained_intron MGP_C57BL6NJ_T0035030.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 29051481 29148052 - Sntg2 protein_coding processed_transcript MGP_C57BL6NJ_T0035031.1 MGP_C57BL6NJ_G0020042.1 mouse_genomes_project 12 29097259 29163239 - Sntg2 protein_coding processed_transcript MGP_C57BL6NJ_T0036308.1 MGP_C57BL6NJ_G0020484.1 mouse_genomes_project 12 113353435 113458930 - MGP_C57BL6NJ_P0036308 Bcl11b protein_coding protein_coding MGP_C57BL6NJ_T0036309.1 MGP_C57BL6NJ_G0020484.1 mouse_genomes_project 12 113360255 113458742 - MGP_C57BL6NJ_P0036309 Bcl11b protein_coding protein_coding MGP_C57BL6NJ_T0036310.1 MGP_C57BL6NJ_G0020484.1 mouse_genomes_project 12 113360255 113458742 - MGP_C57BL6NJ_P0036310 Bcl11b protein_coding protein_coding MGP_C57BL6NJ_T0035645.1 MGP_C57BL6NJ_G0020277.1 mouse_genomes_project 12 83191505 83235145 + MGP_C57BL6NJ_P0035645 Exd2 protein_coding protein_coding MGP_C57BL6NJ_T0000363.1 MGP_C57BL6NJ_G0000282.1 mouse_genomes_project 12 121107705 121108139 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034914.1 MGP_C57BL6NJ_G0020003.1 mouse_genomes_project 12 14680207 14695986 + MGP_C57BL6NJ_P0034914 E2f6 protein_coding protein_coding MGP_C57BL6NJ_T0034915.1 MGP_C57BL6NJ_G0020003.1 mouse_genomes_project 12 14680431 14696003 + MGP_C57BL6NJ_P0034915 E2f6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036517.1 MGP_C57BL6NJ_G0020552.1 mouse_genomes_project 12 118995002 119035724 - MGP_C57BL6NJ_P0036517 Brf1 protein_coding protein_coding MGP_C57BL6NJ_T0034885.1 MGP_C57BL6NJ_G0019990.1 mouse_genomes_project 12 8750166 8803920 + MGP_C57BL6NJ_P0034885 Smc6 protein_coding protein_coding MGP_C57BL6NJ_T0036553.1 MGP_C57BL6NJ_G0020564.1 mouse_genomes_project 12 122655792 122668661 + MGP_C57BL6NJ_P0036553 Zfp386 protein_coding protein_coding MGP_C57BL6NJ_T0036554.1 MGP_C57BL6NJ_G0020564.1 mouse_genomes_project 12 122655832 122663185 + Zfp386 protein_coding retained_intron MGP_C57BL6NJ_T0036555.1 MGP_C57BL6NJ_G0020564.1 mouse_genomes_project 12 122655844 122671429 + MGP_C57BL6NJ_P0036555 Zfp386 protein_coding protein_coding MGP_C57BL6NJ_T0036556.1 MGP_C57BL6NJ_G0020564.1 mouse_genomes_project 12 122655897 122659694 + Zfp386 protein_coding retained_intron MGP_C57BL6NJ_T0013112.1 MGP_C57BL6NJ_G0011157.1 mouse_genomes_project 12 57127496 57127727 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013149.1 MGP_C57BL6NJ_G0011194.1 mouse_genomes_project 12 109307867 109308954 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000998.1 MGP_C57BL6NJ_G0000908.1 mouse_genomes_project 12 107473195 107475337 - TEC TEC MGP_C57BL6NJ_T0010071.1 MGP_C57BL6NJ_G0008156.1 mouse_genomes_project 12 115381068 115381143 + Mir381 miRNA miRNA MGP_C57BL6NJ_T0006560.1 MGP_C57BL6NJ_G0005464.1 mouse_genomes_project 12 10380551 10386852 + Platr19 lincRNA lincRNA MGP_C57BL6NJ_T0101121.1 MGP_C57BL6NJ_G0039167.1 mouse_genomes_project 12 67117261 67117393 + Gm22782 snoRNA snoRNA MGP_C57BL6NJ_T0011594.1 MGP_C57BL6NJ_G0009679.1 mouse_genomes_project 12 90192972 90193274 + Gm25888 misc_RNA misc_RNA MGP_C57BL6NJ_T0003574.1 MGP_C57BL6NJ_G0003267.1 mouse_genomes_project 12 108270821 108290241 + antisense antisense MGP_C57BL6NJ_T0010007.1 MGP_C57BL6NJ_G0008092.1 mouse_genomes_project 12 83993985 83994069 + Mir3067 miRNA miRNA MGP_C57BL6NJ_T0099248.1 MGP_C57BL6NJ_G0037312.1 mouse_genomes_project 12 30766767 30766902 + Gm25913 scaRNA scaRNA MGP_C57BL6NJ_T0000042.1 MGP_C57BL6NJ_G0000034.1 mouse_genomes_project 12 119480343 119480397 - MGP_C57BL6NJ_P0000042 Ighj4 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0035694.1 MGP_C57BL6NJ_G0020292.1 mouse_genomes_project 12 84360472 84363519 - Synj2bp protein_coding retained_intron MGP_C57BL6NJ_T0035695.1 MGP_C57BL6NJ_G0020292.1 mouse_genomes_project 12 84360702 84395084 - MGP_C57BL6NJ_P0035695 Synj2bp protein_coding protein_coding MGP_C57BL6NJ_T0035696.1 MGP_C57BL6NJ_G0020292.1 mouse_genomes_project 12 84362677 84369999 - MGP_C57BL6NJ_P0035696 Synj2bp protein_coding protein_coding MGP_C57BL6NJ_T0035697.1 MGP_C57BL6NJ_G0020292.1 mouse_genomes_project 12 84362807 84395185 - MGP_C57BL6NJ_P0035697 Synj2bp protein_coding protein_coding MGP_C57BL6NJ_T0006638.1 MGP_C57BL6NJ_G0005526.1 mouse_genomes_project 12 114077334 114096704 - Gm16596 lincRNA lincRNA MGP_C57BL6NJ_T0006573.1 MGP_C57BL6NJ_G0005474.1 mouse_genomes_project 12 31887544 31925050 - 4933406C10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006574.1 MGP_C57BL6NJ_G0005474.1 mouse_genomes_project 12 31893117 31925044 - 4933406C10Rik lincRNA lincRNA MGP_C57BL6NJ_T0003572.1 MGP_C57BL6NJ_G0003266.1 mouse_genomes_project 12 108246228 108247867 - Gm29508 antisense antisense MGP_C57BL6NJ_T0003573.1 MGP_C57BL6NJ_G0003266.1 mouse_genomes_project 12 108246229 108248631 - Gm29508 antisense antisense MGP_C57BL6NJ_T0036286.1 MGP_C57BL6NJ_G0020480.1 mouse_genomes_project 12 110903441 110991889 + MGP_C57BL6NJ_P0036286 Ak7 protein_coding protein_coding MGP_C57BL6NJ_T0000129.1 MGP_C57BL6NJ_G0000099.1 mouse_genomes_project 12 120748955 120749458 - MGP_C57BL6NJ_P0000129 Ighv1-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000344.1 MGP_C57BL6NJ_G0000263.1 mouse_genomes_project 12 120260179 120260574 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000362.1 MGP_C57BL6NJ_G0000281.1 mouse_genomes_project 12 120944856 120945341 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0006571.1 MGP_C57BL6NJ_G0005472.1 mouse_genomes_project 12 30359616 30360294 - Gm29541 lincRNA lincRNA MGP_C57BL6NJ_T0036234.1 MGP_C57BL6NJ_G0020450.1 mouse_genomes_project 12 109047076 109058325 - MGP_C57BL6NJ_P0036234 Serpina11 protein_coding protein_coding MGP_C57BL6NJ_T0036235.1 MGP_C57BL6NJ_G0020450.1 mouse_genomes_project 12 109047088 109058295 - MGP_C57BL6NJ_P0036235 Serpina11 protein_coding protein_coding MGP_C57BL6NJ_T0036236.1 MGP_C57BL6NJ_G0020450.1 mouse_genomes_project 12 109051911 109058287 - MGP_C57BL6NJ_P0036236 Serpina11 protein_coding protein_coding MGP_C57BL6NJ_T0036237.1 MGP_C57BL6NJ_G0020450.1 mouse_genomes_project 12 109051997 109058285 - MGP_C57BL6NJ_P0036237 Serpina11 protein_coding protein_coding MGP_C57BL6NJ_T0036238.1 MGP_C57BL6NJ_G0020450.1 mouse_genomes_project 12 109053137 109058309 - Serpina11 protein_coding processed_transcript MGP_C57BL6NJ_T0009994.1 MGP_C57BL6NJ_G0008079.1 mouse_genomes_project 12 60166887 60166957 - Gm27284 miRNA miRNA MGP_C57BL6NJ_T0035014.1 MGP_C57BL6NJ_G0020039.1 mouse_genomes_project 12 28281268 28689784 + MGP_C57BL6NJ_P0035014 Myt1l protein_coding protein_coding MGP_C57BL6NJ_T0035015.1 MGP_C57BL6NJ_G0020039.1 mouse_genomes_project 12 28287755 28689784 + MGP_C57BL6NJ_P0035015 Myt1l protein_coding protein_coding MGP_C57BL6NJ_T0035836.1 MGP_C57BL6NJ_G0020328.1 mouse_genomes_project 12 87749012 87776513 + MGP_C57BL6NJ_P0035836 Vsx2 protein_coding protein_coding MGP_C57BL6NJ_T0035837.1 MGP_C57BL6NJ_G0020328.1 mouse_genomes_project 12 87749090 87776513 + MGP_C57BL6NJ_P0035837 Vsx2 protein_coding protein_coding MGP_C57BL6NJ_T0099835.1 MGP_C57BL6NJ_G0037881.1 mouse_genomes_project 12 61798493 61798600 + Gm23059 snRNA snRNA MGP_C57BL6NJ_T0098811.1 MGP_C57BL6NJ_G0036875.1 mouse_genomes_project 12 6752969 6753523 + pseudogene pseudogene MGP_C57BL6NJ_T0035287.1 MGP_C57BL6NJ_G0020148.1 mouse_genomes_project 12 57476068 57500900 + MGP_C57BL6NJ_P0035287 Pax9 protein_coding protein_coding MGP_C57BL6NJ_T0035288.1 MGP_C57BL6NJ_G0020148.1 mouse_genomes_project 12 57479944 57501015 + MGP_C57BL6NJ_P0035288 Pax9 protein_coding protein_coding MGP_C57BL6NJ_T0035289.1 MGP_C57BL6NJ_G0020148.1 mouse_genomes_project 12 57480034 57497151 + Pax9 protein_coding retained_intron MGP_C57BL6NJ_T0003557.1 MGP_C57BL6NJ_G0003252.1 mouse_genomes_project 12 83441813 83448906 - Plekhd1os antisense antisense MGP_C57BL6NJ_T0035262.1 MGP_C57BL6NJ_G0020134.1 mouse_genomes_project 12 55843762 55855998 + MGP_C57BL6NJ_P0035262 protein_coding protein_coding MGP_C57BL6NJ_T0006624.1 MGP_C57BL6NJ_G0005516.1 mouse_genomes_project 12 112019736 112054952 - 4933406K04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006625.1 MGP_C57BL6NJ_G0005516.1 mouse_genomes_project 12 112030969 112054914 - 4933406K04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006626.1 MGP_C57BL6NJ_G0005516.1 mouse_genomes_project 12 112039928 112054923 - 4933406K04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006627.1 MGP_C57BL6NJ_G0005516.1 mouse_genomes_project 12 112044774 112054952 - 4933406K04Rik lincRNA lincRNA MGP_C57BL6NJ_T0017765.1 MGP_C57BL6NJ_G0015622.1 mouse_genomes_project 12 32360007 32397600 - Atxn7l1os2 processed_transcript processed_transcript MGP_C57BL6NJ_T0035873.1 MGP_C57BL6NJ_G0020339.1 mouse_genomes_project 12 88313013 88324813 - MGP_C57BL6NJ_P0035873 Prox2 protein_coding protein_coding MGP_C57BL6NJ_T0035874.1 MGP_C57BL6NJ_G0020339.1 mouse_genomes_project 12 88313442 88336566 - MGP_C57BL6NJ_P0035874 Prox2 protein_coding protein_coding MGP_C57BL6NJ_T0035875.1 MGP_C57BL6NJ_G0020339.1 mouse_genomes_project 12 88321754 88323347 - Prox2 protein_coding retained_intron MGP_C57BL6NJ_T0010060.1 MGP_C57BL6NJ_G0008145.1 mouse_genomes_project 12 115369773 115369894 + Mir1193 miRNA miRNA MGP_C57BL6NJ_T0010063.1 MGP_C57BL6NJ_G0008148.1 mouse_genomes_project 12 115372856 115372919 + Mir495 miRNA miRNA MGP_C57BL6NJ_T0013159.1 MGP_C57BL6NJ_G0011204.1 mouse_genomes_project 12 119433967 119434518 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035222.1 MGP_C57BL6NJ_G0020114.1 mouse_genomes_project 12 52065895 52120040 + MGP_C57BL6NJ_P0035222 Ap4s1 protein_coding protein_coding MGP_C57BL6NJ_T0035223.1 MGP_C57BL6NJ_G0020114.1 mouse_genomes_project 12 52065964 52120039 + MGP_C57BL6NJ_P0035223 Ap4s1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102783.1 MGP_C57BL6NJ_G0040577.1 mouse_genomes_project 12 109247557 109252551 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101134.1 MGP_C57BL6NJ_G0039180.1 mouse_genomes_project 12 109521514 109521642 - Gm24334 snoRNA snoRNA MGP_C57BL6NJ_T0036039.1 MGP_C57BL6NJ_G0020389.1 mouse_genomes_project 12 95412801 95456568 - MGP_C57BL6NJ_P0036039 Gtf2a1 protein_coding protein_coding MGP_C57BL6NJ_T0036040.1 MGP_C57BL6NJ_G0020389.1 mouse_genomes_project 12 95415573 95457046 - MGP_C57BL6NJ_P0036040 Gtf2a1 protein_coding protein_coding MGP_C57BL6NJ_T0036061.1 MGP_C57BL6NJ_G0020394.1 mouse_genomes_project 12 102659357 102667296 + MGP_C57BL6NJ_P0036061 Gpr65 protein_coding protein_coding MGP_C57BL6NJ_T0035320.1 MGP_C57BL6NJ_G0020158.1 mouse_genomes_project 12 59943430 59976614 - MGP_C57BL6NJ_P0035320 Trappc6b protein_coding protein_coding MGP_C57BL6NJ_T0035056.1 MGP_C57BL6NJ_G0020052.1 mouse_genomes_project 12 30344393 30359165 - MGP_C57BL6NJ_P0035056 Cbll1 protein_coding protein_coding MGP_C57BL6NJ_T0035057.1 MGP_C57BL6NJ_G0020052.1 mouse_genomes_project 12 30344500 30359165 - MGP_C57BL6NJ_P0035057 Cbll1 protein_coding protein_coding MGP_C57BL6NJ_T0035058.1 MGP_C57BL6NJ_G0020052.1 mouse_genomes_project 12 30346843 30359165 - MGP_C57BL6NJ_P0035058 Cbll1 protein_coding protein_coding MGP_C57BL6NJ_T0035059.1 MGP_C57BL6NJ_G0020052.1 mouse_genomes_project 12 30347479 30359106 - MGP_C57BL6NJ_P0035059 Cbll1 protein_coding protein_coding MGP_C57BL6NJ_T0035060.1 MGP_C57BL6NJ_G0020052.1 mouse_genomes_project 12 30347489 30359104 - MGP_C57BL6NJ_P0035060 Cbll1 protein_coding protein_coding MGP_C57BL6NJ_T0034884.1 MGP_C57BL6NJ_G0019989.1 mouse_genomes_project 12 8724313 8750068 - MGP_C57BL6NJ_P0034884 Gen1 protein_coding protein_coding MGP_C57BL6NJ_T0010000.1 MGP_C57BL6NJ_G0008085.1 mouse_genomes_project 12 71700589 71700699 - Mir681 miRNA miRNA MGP_C57BL6NJ_T0101105.1 MGP_C57BL6NJ_G0039151.1 mouse_genomes_project 12 39160160 39160292 + Gm24434 snoRNA snoRNA MGP_C57BL6NJ_T0000073.1 MGP_C57BL6NJ_G0000059.1 mouse_genomes_project 12 119777337 119777862 - MGP_C57BL6NJ_P0000073 Ighv5-9 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036436.1 MGP_C57BL6NJ_G0020523.1 mouse_genomes_project 12 117613815 117616786 - MGP_C57BL6NJ_P0036436 Ckb protein_coding protein_coding MGP_C57BL6NJ_T0000181.1 MGP_C57BL6NJ_G0000135.1 mouse_genomes_project 12 122382046 122382528 - MGP_C57BL6NJ_P0000181 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0011588.1 MGP_C57BL6NJ_G0009673.1 mouse_genomes_project 12 71233048 71233348 - Rn7s2 misc_RNA misc_RNA MGP_C57BL6NJ_T0035007.1 MGP_C57BL6NJ_G0020036.1 mouse_genomes_project 12 27368290 27375172 + MGP_C57BL6NJ_P0035007 Adi1 protein_coding protein_coding MGP_C57BL6NJ_T0035008.1 MGP_C57BL6NJ_G0020036.1 mouse_genomes_project 12 27368543 27374727 + MGP_C57BL6NJ_P0035008 Adi1 protein_coding protein_coding MGP_C57BL6NJ_T0035009.1 MGP_C57BL6NJ_G0020036.1 mouse_genomes_project 12 27370864 27372734 + Adi1 protein_coding processed_transcript MGP_C57BL6NJ_T0000025.1 MGP_C57BL6NJ_G0000017.1 mouse_genomes_project 12 119482357 119482368 - MGP_C57BL6NJ_P0000025 Ighd4-1 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0013148.1 MGP_C57BL6NJ_G0011193.1 mouse_genomes_project 12 108607766 108608430 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010082.1 MGP_C57BL6NJ_G0008167.1 mouse_genomes_project 12 115392773 115392839 + Mir154 miRNA miRNA MGP_C57BL6NJ_T0035166.1 MGP_C57BL6NJ_G0020092.1 mouse_genomes_project 12 39752448 39776270 - MGP_C57BL6NJ_P0035166 Lsmem1 protein_coding protein_coding MGP_C57BL6NJ_T0000347.1 MGP_C57BL6NJ_G0000266.1 mouse_genomes_project 12 120346554 120346883 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035702.1 MGP_C57BL6NJ_G0020295.1 mouse_genomes_project 12 84492949 84528017 + MGP_C57BL6NJ_P0035702 Ttc9 protein_coding protein_coding MGP_C57BL6NJ_T0010092.1 MGP_C57BL6NJ_G0008177.1 mouse_genomes_project 12 116000595 116000677 - Mir1247 miRNA miRNA MGP_C57BL6NJ_T0003547.1 MGP_C57BL6NJ_G0003244.1 mouse_genomes_project 12 57474219 57477270 - Gm15524 antisense antisense MGP_C57BL6NJ_T0035242.1 MGP_C57BL6NJ_G0020125.1 mouse_genomes_project 12 55266094 55287054 - MGP_C57BL6NJ_P0035242 Eapp protein_coding protein_coding MGP_C57BL6NJ_T0035243.1 MGP_C57BL6NJ_G0020125.1 mouse_genomes_project 12 55266211 55287017 - MGP_C57BL6NJ_P0035243 Eapp protein_coding protein_coding MGP_C57BL6NJ_T0035244.1 MGP_C57BL6NJ_G0020125.1 mouse_genomes_project 12 55277270 55287076 - MGP_C57BL6NJ_P0035244 Eapp protein_coding protein_coding MGP_C57BL6NJ_T0035245.1 MGP_C57BL6NJ_G0020125.1 mouse_genomes_project 12 55281409 55287095 - MGP_C57BL6NJ_P0035245 Eapp protein_coding protein_coding MGP_C57BL6NJ_T0000046.1 MGP_C57BL6NJ_G0000037.1 mouse_genomes_project 12 119481610 119481663 - MGP_C57BL6NJ_P0000046 Ighj1 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0003575.1 MGP_C57BL6NJ_G0003268.1 mouse_genomes_project 12 108808835 108811625 + B430119L08Rik antisense antisense MGP_C57BL6NJ_T0003542.1 MGP_C57BL6NJ_G0003241.1 mouse_genomes_project 12 39786638 39788225 - Gm17024 antisense antisense MGP_C57BL6NJ_T0035834.1 MGP_C57BL6NJ_G0020326.1 mouse_genomes_project 12 87592185 87612411 - MGP_C57BL6NJ_P0035834 Aldh6a1 protein_coding protein_coding MGP_C57BL6NJ_T0035481.1 MGP_C57BL6NJ_G0020214.1 mouse_genomes_project 12 74306867 74333006 - Rtn1 protein_coding processed_transcript MGP_C57BL6NJ_T0035482.1 MGP_C57BL6NJ_G0020214.1 mouse_genomes_project 12 74306867 74516718 - MGP_C57BL6NJ_P0035482 Rtn1 protein_coding protein_coding MGP_C57BL6NJ_T0035483.1 MGP_C57BL6NJ_G0020214.1 mouse_genomes_project 12 74306868 74333991 - MGP_C57BL6NJ_P0035483 Rtn1 protein_coding protein_coding MGP_C57BL6NJ_T0035484.1 MGP_C57BL6NJ_G0020214.1 mouse_genomes_project 12 74307404 74333991 - MGP_C57BL6NJ_P0035484 Rtn1 protein_coding protein_coding MGP_C57BL6NJ_T0035485.1 MGP_C57BL6NJ_G0020214.1 mouse_genomes_project 12 74320304 74333953 - Rtn1 protein_coding processed_transcript MGP_C57BL6NJ_T0006631.1 MGP_C57BL6NJ_G0005520.1 mouse_genomes_project 12 112493341 112496221 + Gm16085 lincRNA lincRNA MGP_C57BL6NJ_T0036484.1 MGP_C57BL6NJ_G0020537.1 mouse_genomes_project 12 118487100 118497580 + MGP_C57BL6NJ_P0036484 A530016L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0034973.1 MGP_C57BL6NJ_G0020022.1 mouse_genomes_project 12 23014907 23026311 + MGP_C57BL6NJ_P0034973 Klf11 protein_coding protein_coding MGP_C57BL6NJ_T0034974.1 MGP_C57BL6NJ_G0020022.1 mouse_genomes_project 12 23015432 23018679 + MGP_C57BL6NJ_P0034974 Klf11 protein_coding protein_coding MGP_C57BL6NJ_T0034975.1 MGP_C57BL6NJ_G0020022.1 mouse_genomes_project 12 23015432 23017347 + MGP_C57BL6NJ_P0034975 Klf11 protein_coding protein_coding MGP_C57BL6NJ_T0034976.1 MGP_C57BL6NJ_G0020022.1 mouse_genomes_project 12 23015690 23018674 + MGP_C57BL6NJ_P0034976 Klf11 protein_coding protein_coding MGP_C57BL6NJ_T0010064.1 MGP_C57BL6NJ_G0008149.1 mouse_genomes_project 12 115374108 115374200 + Mir667 miRNA miRNA MGP_C57BL6NJ_T0036287.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998537 111050815 + MGP_C57BL6NJ_P0036287 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036288.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998544 111025523 + Papola protein_coding processed_transcript MGP_C57BL6NJ_T0036289.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998549 111053053 + MGP_C57BL6NJ_P0036289 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036290.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998566 111030045 + Papola protein_coding retained_intron MGP_C57BL6NJ_T0036291.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998571 111052780 + MGP_C57BL6NJ_P0036291 Papola protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036292.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998573 111025685 + Papola protein_coding processed_transcript MGP_C57BL6NJ_T0036293.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998576 111054866 + MGP_C57BL6NJ_P0036293 Papola protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036294.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998578 111022565 + MGP_C57BL6NJ_P0036294 Papola protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036295.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998590 111025685 + MGP_C57BL6NJ_P0036295 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036296.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998705 111053195 + MGP_C57BL6NJ_P0036296 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036297.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 110998740 111054871 + MGP_C57BL6NJ_P0036297 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036298.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111015661 111027388 + Papola protein_coding retained_intron MGP_C57BL6NJ_T0036299.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111024589 111036355 + MGP_C57BL6NJ_P0036299 Papola protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036300.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111025299 111025685 + Papola protein_coding retained_intron MGP_C57BL6NJ_T0036301.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111028275 111053032 + MGP_C57BL6NJ_P0036301 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036302.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111028326 111045168 + MGP_C57BL6NJ_P0036302 Papola protein_coding protein_coding MGP_C57BL6NJ_T0036303.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111033855 111034806 + Papola protein_coding retained_intron MGP_C57BL6NJ_T0036304.1 MGP_C57BL6NJ_G0020481.1 mouse_genomes_project 12 111044988 111051421 + MGP_C57BL6NJ_P0036304 Papola protein_coding protein_coding MGP_C57BL6NJ_T0011585.1 MGP_C57BL6NJ_G0009670.1 mouse_genomes_project 12 57006379 57006664 - Gm24685 misc_RNA misc_RNA MGP_C57BL6NJ_T0017771.1 MGP_C57BL6NJ_G0015628.1 mouse_genomes_project 12 95546611 95558417 - Gm8378 processed_transcript processed_transcript MGP_C57BL6NJ_T0017772.1 MGP_C57BL6NJ_G0015628.1 mouse_genomes_project 12 95554926 95558462 - Gm8378 processed_transcript processed_transcript MGP_C57BL6NJ_T0017773.1 MGP_C57BL6NJ_G0015628.1 mouse_genomes_project 12 95556814 95558462 - Gm8378 processed_transcript processed_transcript MGP_C57BL6NJ_T0035835.1 MGP_C57BL6NJ_G0020327.1 mouse_genomes_project 12 87612968 87704015 + MGP_C57BL6NJ_P0035835 Lin52 protein_coding protein_coding MGP_C57BL6NJ_T0035260.1 MGP_C57BL6NJ_G0020133.1 mouse_genomes_project 12 55796844 55815428 + MGP_C57BL6NJ_P0035260 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0035261.1 MGP_C57BL6NJ_G0020133.1 mouse_genomes_project 12 55796844 55815972 + MGP_C57BL6NJ_P0035261 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0035888.1 MGP_C57BL6NJ_G0020345.1 mouse_genomes_project 12 88523957 88531999 - MGP_C57BL6NJ_P0035888 Acyp1 protein_coding protein_coding MGP_C57BL6NJ_T0035889.1 MGP_C57BL6NJ_G0020345.1 mouse_genomes_project 12 88523968 88531870 - MGP_C57BL6NJ_P0035889 Acyp1 protein_coding protein_coding MGP_C57BL6NJ_T0035890.1 MGP_C57BL6NJ_G0020345.1 mouse_genomes_project 12 88524106 88545115 - MGP_C57BL6NJ_P0035890 Acyp1 protein_coding protein_coding MGP_C57BL6NJ_T0035891.1 MGP_C57BL6NJ_G0020345.1 mouse_genomes_project 12 88530456 88531982 - MGP_C57BL6NJ_P0035891 Acyp1 protein_coding protein_coding MGP_C57BL6NJ_T0000072.1 MGP_C57BL6NJ_G0000058.1 mouse_genomes_project 12 119731015 119732255 - MGP_C57BL6NJ_P0000072 Ighv2-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036247.1 MGP_C57BL6NJ_G0020456.1 mouse_genomes_project 12 109218015 109226914 - MGP_C57BL6NJ_P0036247 Serpina3c protein_coding protein_coding MGP_C57BL6NJ_T0000131.1 MGP_C57BL6NJ_G0000101.1 mouse_genomes_project 12 120824230 120824695 - MGP_C57BL6NJ_P0000131 Ighv10-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000985.1 MGP_C57BL6NJ_G0000895.1 mouse_genomes_project 12 10165966 10166496 + TEC TEC MGP_C57BL6NJ_T0036351.1 MGP_C57BL6NJ_G0020498.1 mouse_genomes_project 12 114619992 114657389 - MGP_C57BL6NJ_P0036351 Begain protein_coding protein_coding MGP_C57BL6NJ_T0036352.1 MGP_C57BL6NJ_G0020498.1 mouse_genomes_project 12 114622415 114624893 - Begain protein_coding retained_intron MGP_C57BL6NJ_T0036353.1 MGP_C57BL6NJ_G0020498.1 mouse_genomes_project 12 114625457 114641387 - Begain protein_coding processed_transcript MGP_C57BL6NJ_T0035441.1 MGP_C57BL6NJ_G0020200.1 mouse_genomes_project 12 72430284 72447418 + MGP_C57BL6NJ_P0035441 Tmx1 protein_coding protein_coding MGP_C57BL6NJ_T0035442.1 MGP_C57BL6NJ_G0020200.1 mouse_genomes_project 12 72433213 72445631 + MGP_C57BL6NJ_P0035442 Tmx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035443.1 MGP_C57BL6NJ_G0020200.1 mouse_genomes_project 12 72437016 72437752 + Tmx1 protein_coding retained_intron MGP_C57BL6NJ_T0101140.1 MGP_C57BL6NJ_G0039186.1 mouse_genomes_project 12 115293004 115293075 + Gm23600 snoRNA snoRNA MGP_C57BL6NJ_T0006585.1 MGP_C57BL6NJ_G0005482.1 mouse_genomes_project 12 71787702 71794767 + 4931403G20Rik lincRNA lincRNA MGP_C57BL6NJ_T0098974.1 MGP_C57BL6NJ_G0037038.1 mouse_genomes_project 12 2887907 2888022 + Gm23752 rRNA rRNA MGP_C57BL6NJ_T0101107.1 MGP_C57BL6NJ_G0039153.1 mouse_genomes_project 12 43533299 43533428 + Gm26326 snoRNA snoRNA MGP_C57BL6NJ_T0003538.1 MGP_C57BL6NJ_G0003237.1 mouse_genomes_project 12 30346522 30347454 + Gm29542 antisense antisense MGP_C57BL6NJ_T0000087.1 MGP_C57BL6NJ_G0000069.1 mouse_genomes_project 12 120088085 120088638 - MGP_C57BL6NJ_P0000087 Ighv7-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036522.1 MGP_C57BL6NJ_G0020556.1 mouse_genomes_project 12 119116134 119130857 + MGP_C57BL6NJ_P0036522 Tex22 protein_coding protein_coding MGP_C57BL6NJ_T0036523.1 MGP_C57BL6NJ_G0020556.1 mouse_genomes_project 12 119116134 119130855 + MGP_C57BL6NJ_P0036523 Tex22 protein_coding protein_coding MGP_C57BL6NJ_T0036524.1 MGP_C57BL6NJ_G0020556.1 mouse_genomes_project 12 119116388 119130858 + MGP_C57BL6NJ_P0036524 Tex22 protein_coding protein_coding MGP_C57BL6NJ_T0036525.1 MGP_C57BL6NJ_G0020556.1 mouse_genomes_project 12 119116410 119117004 + MGP_C57BL6NJ_P0036525 Tex22 protein_coding protein_coding MGP_C57BL6NJ_T0000334.1 MGP_C57BL6NJ_G0000253.1 mouse_genomes_project 12 119806147 119806521 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036104.1 MGP_C57BL6NJ_G0020405.1 mouse_genomes_project 12 104708358 104721152 + MGP_C57BL6NJ_P0036104 Psmc1 protein_coding protein_coding MGP_C57BL6NJ_T0098982.1 MGP_C57BL6NJ_G0037046.1 mouse_genomes_project 12 55258704 55258814 - Gm24971 rRNA rRNA MGP_C57BL6NJ_T0102779.1 MGP_C57BL6NJ_G0040573.1 mouse_genomes_project 12 108887867 108900415 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010103.1 MGP_C57BL6NJ_G0008188.1 mouse_genomes_project 12 121952670 121952746 - Gm27722 miRNA miRNA MGP_C57BL6NJ_T0036132.1 MGP_C57BL6NJ_G0020414.1 mouse_genomes_project 12 106152994 106437888 + MGP_C57BL6NJ_P0036132 Catsperb protein_coding protein_coding MGP_C57BL6NJ_T0000335.1 MGP_C57BL6NJ_G0000254.1 mouse_genomes_project 12 119913581 119913951 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035212.1 MGP_C57BL6NJ_G0020110.1 mouse_genomes_project 12 51700573 51732277 + MGP_C57BL6NJ_P0035212 G2e3 protein_coding protein_coding MGP_C57BL6NJ_T0035213.1 MGP_C57BL6NJ_G0020110.1 mouse_genomes_project 12 51700800 51728558 + MGP_C57BL6NJ_P0035213 G2e3 protein_coding protein_coding MGP_C57BL6NJ_T0035214.1 MGP_C57BL6NJ_G0020110.1 mouse_genomes_project 12 51700884 51728661 + MGP_C57BL6NJ_P0035214 G2e3 protein_coding protein_coding MGP_C57BL6NJ_T0035215.1 MGP_C57BL6NJ_G0020110.1 mouse_genomes_project 12 51709661 51718824 + G2e3 protein_coding retained_intron MGP_C57BL6NJ_T0035216.1 MGP_C57BL6NJ_G0020110.1 mouse_genomes_project 12 51725965 51729368 + G2e3 protein_coding retained_intron MGP_C57BL6NJ_T0035093.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132456 32246485 + MGP_C57BL6NJ_P0035093 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035094.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132474 32246485 + MGP_C57BL6NJ_P0035094 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035095.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132517 32374959 + MGP_C57BL6NJ_P0035095 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035096.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132526 32377420 + MGP_C57BL6NJ_P0035096 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035097.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132537 32327896 + MGP_C57BL6NJ_P0035097 Atxn7l1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035098.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32132568 32330612 + Atxn7l1 protein_coding retained_intron MGP_C57BL6NJ_T0035099.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32297726 32370036 + MGP_C57BL6NJ_P0035099 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035100.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32316074 32346697 + MGP_C57BL6NJ_P0035100 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035101.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32316086 32330612 + Atxn7l1 protein_coding retained_intron MGP_C57BL6NJ_T0035102.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32316197 32327826 + MGP_C57BL6NJ_P0035102 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035103.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32317194 32374120 + MGP_C57BL6NJ_P0035103 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0035104.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32317202 32327967 + Atxn7l1 protein_coding retained_intron MGP_C57BL6NJ_T0035105.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32347060 32370041 + Atxn7l1 protein_coding retained_intron MGP_C57BL6NJ_T0035106.1 MGP_C57BL6NJ_G0020065.1 mouse_genomes_project 12 32369086 32374948 + MGP_C57BL6NJ_P0035106 Atxn7l1 protein_coding protein_coding MGP_C57BL6NJ_T0036169.1 MGP_C57BL6NJ_G0020426.1 mouse_genomes_project 12 107611487 107654924 - MGP_C57BL6NJ_P0036169 Gm28051 protein_coding protein_coding MGP_C57BL6NJ_T0035180.1 MGP_C57BL6NJ_G0020095.1 mouse_genomes_project 12 39899815 40021596 - MGP_C57BL6NJ_P0035180 Zfp277 protein_coding protein_coding MGP_C57BL6NJ_T0035181.1 MGP_C57BL6NJ_G0020095.1 mouse_genomes_project 12 39900327 40021575 - MGP_C57BL6NJ_P0035181 Zfp277 protein_coding protein_coding MGP_C57BL6NJ_T0034888.1 MGP_C57BL6NJ_G0019993.1 mouse_genomes_project 12 9816560 9935069 + MGP_C57BL6NJ_P0034888 Fam49a protein_coding protein_coding MGP_C57BL6NJ_T0034889.1 MGP_C57BL6NJ_G0019993.1 mouse_genomes_project 12 9816560 9935069 + MGP_C57BL6NJ_P0034889 Fam49a protein_coding protein_coding MGP_C57BL6NJ_T0035033.1 MGP_C57BL6NJ_G0020044.1 mouse_genomes_project 12 29696260 29707627 + MGP_C57BL6NJ_P0035033 Fam150b protein_coding protein_coding MGP_C57BL6NJ_T0000183.1 MGP_C57BL6NJ_G0000136.1 mouse_genomes_project 12 122406973 122407429 - MGP_C57BL6NJ_P0000183 Ighv1-77 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0099856.1 MGP_C57BL6NJ_G0037902.1 mouse_genomes_project 12 105900029 105900124 - Gm22749 snRNA snRNA MGP_C57BL6NJ_T0036580.1 MGP_C57BL6NJ_G0020573.1 mouse_genomes_project 12 124986773 125058156 - MGP_C57BL6NJ_P0036580 Sp4 protein_coding protein_coding MGP_C57BL6NJ_T0036564.1 MGP_C57BL6NJ_G0020567.1 mouse_genomes_project 12 122901327 123004339 + MGP_C57BL6NJ_P0036564 Esyt2 protein_coding protein_coding MGP_C57BL6NJ_T0000376.1 MGP_C57BL6NJ_G0000295.1 mouse_genomes_project 12 121392549 121392843 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034994.1 MGP_C57BL6NJ_G0020028.1 mouse_genomes_project 12 24803633 24919529 - MGP_C57BL6NJ_P0034994 Rnf144a protein_coding protein_coding MGP_C57BL6NJ_T0034995.1 MGP_C57BL6NJ_G0020028.1 mouse_genomes_project 12 24803633 24919529 - MGP_C57BL6NJ_P0034995 Rnf144a protein_coding protein_coding MGP_C57BL6NJ_T0006562.1 MGP_C57BL6NJ_G0005466.1 mouse_genomes_project 12 13635087 13709628 + Gm5432 lincRNA lincRNA MGP_C57BL6NJ_T0003551.1 MGP_C57BL6NJ_G0003248.1 mouse_genomes_project 12 71728245 71732469 + 4930512B01Rik antisense antisense MGP_C57BL6NJ_T0003552.1 MGP_C57BL6NJ_G0003248.1 mouse_genomes_project 12 71728292 71780542 + 4930512B01Rik antisense antisense MGP_C57BL6NJ_T0101122.1 MGP_C57BL6NJ_G0039168.1 mouse_genomes_project 12 68212228 68212347 - Gm23826 snoRNA snoRNA MGP_C57BL6NJ_T0006648.1 MGP_C57BL6NJ_G0005529.1 mouse_genomes_project 12 115216744 115219840 - Gm26906 lincRNA lincRNA MGP_C57BL6NJ_T0036566.1 MGP_C57BL6NJ_G0020569.1 mouse_genomes_project 12 123131817 123421491 + Ptprn2 protein_coding processed_transcript MGP_C57BL6NJ_T0036567.1 MGP_C57BL6NJ_G0020569.1 mouse_genomes_project 12 123131826 123785298 + Ptprn2 protein_coding processed_transcript MGP_C57BL6NJ_T0036568.1 MGP_C57BL6NJ_G0020569.1 mouse_genomes_project 12 123131826 123944169 + MGP_C57BL6NJ_P0036568 Ptprn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036569.1 MGP_C57BL6NJ_G0020569.1 mouse_genomes_project 12 123131867 123494526 + Ptprn2 protein_coding retained_intron MGP_C57BL6NJ_T0036570.1 MGP_C57BL6NJ_G0020569.1 mouse_genomes_project 12 123131930 123944113 + MGP_C57BL6NJ_P0036570 Ptprn2 protein_coding protein_coding MGP_C57BL6NJ_T0036513.1 MGP_C57BL6NJ_G0020548.1 mouse_genomes_project 12 118858457 118867610 - MGP_C57BL6NJ_P0036513 Cdca4 protein_coding protein_coding MGP_C57BL6NJ_T0000104.1 MGP_C57BL6NJ_G0000083.1 mouse_genomes_project 12 120425264 120425694 - MGP_C57BL6NJ_P0000104 Ighv14-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000105.1 MGP_C57BL6NJ_G0000083.1 mouse_genomes_project 12 120425270 120425689 - MGP_C57BL6NJ_P0000105 Ighv14-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036264.1 MGP_C57BL6NJ_G0020468.1 mouse_genomes_project 12 110053501 110101682 - MGP_C57BL6NJ_P0036264 Syne3 protein_coding protein_coding MGP_C57BL6NJ_T0099833.1 MGP_C57BL6NJ_G0037879.1 mouse_genomes_project 12 56626965 56627068 - Gm22296 snRNA snRNA MGP_C57BL6NJ_T0000186.1 MGP_C57BL6NJ_G0000138.1 mouse_genomes_project 12 122450360 122450815 - MGP_C57BL6NJ_P0000186 Ighv1-78 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000187.1 MGP_C57BL6NJ_G0000138.1 mouse_genomes_project 12 122450360 122450654 - MGP_C57BL6NJ_P0000187 Ighv1-78 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036508.1 MGP_C57BL6NJ_G0020546.1 mouse_genomes_project 12 118811493 118840755 - MGP_C57BL6NJ_P0036508 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036509.1 MGP_C57BL6NJ_G0020546.1 mouse_genomes_project 12 118811500 118817425 - MGP_C57BL6NJ_P0036509 protein_coding protein_coding MGP_C57BL6NJ_T0036510.1 MGP_C57BL6NJ_G0020546.1 mouse_genomes_project 12 118811740 118814561 - MGP_C57BL6NJ_P0036510 protein_coding protein_coding MGP_C57BL6NJ_T0099837.1 MGP_C57BL6NJ_G0037883.1 mouse_genomes_project 12 65000338 65000445 + Gm24921 snRNA snRNA MGP_C57BL6NJ_T0035608.1 MGP_C57BL6NJ_G0020257.1 mouse_genomes_project 12 79773197 80032305 + MGP_C57BL6NJ_P0035608 Fut8 protein_coding protein_coding MGP_C57BL6NJ_T0035609.1 MGP_C57BL6NJ_G0020257.1 mouse_genomes_project 12 79773197 80032305 + MGP_C57BL6NJ_P0035609 Fut8 protein_coding protein_coding MGP_C57BL6NJ_T0035610.1 MGP_C57BL6NJ_G0020257.1 mouse_genomes_project 12 79774158 80032647 + MGP_C57BL6NJ_P0035610 Fut8 protein_coding protein_coding MGP_C57BL6NJ_T0035132.1 MGP_C57BL6NJ_G0020082.1 mouse_genomes_project 12 35395618 35407382 - MGP_C57BL6NJ_P0035132 Lrrc72 protein_coding protein_coding MGP_C57BL6NJ_T0035133.1 MGP_C57BL6NJ_G0020082.1 mouse_genomes_project 12 35396836 35444316 - MGP_C57BL6NJ_P0035133 Lrrc72 protein_coding protein_coding MGP_C57BL6NJ_T0035134.1 MGP_C57BL6NJ_G0020082.1 mouse_genomes_project 12 35399556 35407398 - Lrrc72 protein_coding retained_intron MGP_C57BL6NJ_T0000379.1 MGP_C57BL6NJ_G0000298.1 mouse_genomes_project 12 121678021 121678455 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0006599.1 MGP_C57BL6NJ_G0005492.1 mouse_genomes_project 12 83675970 83677981 - Gm26545 lincRNA lincRNA MGP_C57BL6NJ_T0035189.1 MGP_C57BL6NJ_G0020099.1 mouse_genomes_project 12 44041412 44045584 - MGP_C57BL6NJ_P0035189 Dnajb9 protein_coding protein_coding MGP_C57BL6NJ_T0013162.1 MGP_C57BL6NJ_G0011207.1 mouse_genomes_project 12 120010381 120010816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010070.1 MGP_C57BL6NJ_G0008155.1 mouse_genomes_project 12 115378559 115378638 + Mir300 miRNA miRNA MGP_C57BL6NJ_T0035807.1 MGP_C57BL6NJ_G0020321.1 mouse_genomes_project 12 87489848 87510547 - MGP_C57BL6NJ_P0035807 Fam161b protein_coding protein_coding MGP_C57BL6NJ_T0035808.1 MGP_C57BL6NJ_G0020321.1 mouse_genomes_project 12 87489856 87510535 - MGP_C57BL6NJ_P0035808 Fam161b protein_coding protein_coding MGP_C57BL6NJ_T0035809.1 MGP_C57BL6NJ_G0020321.1 mouse_genomes_project 12 87493824 87510506 - Fam161b protein_coding retained_intron MGP_C57BL6NJ_T0035810.1 MGP_C57BL6NJ_G0020321.1 mouse_genomes_project 12 87495691 87502188 - Fam161b protein_coding retained_intron MGP_C57BL6NJ_T0010056.1 MGP_C57BL6NJ_G0008141.1 mouse_genomes_project 12 115366912 115366993 + Mir758 miRNA miRNA MGP_C57BL6NJ_T0003578.1 MGP_C57BL6NJ_G0003271.1 mouse_genomes_project 12 123899986 124012940 - Gm5441 antisense antisense MGP_C57BL6NJ_T0003579.1 MGP_C57BL6NJ_G0003271.1 mouse_genomes_project 12 123946754 124012950 - Gm5441 antisense antisense MGP_C57BL6NJ_T0102782.1 MGP_C57BL6NJ_G0040576.1 mouse_genomes_project 12 109149715 109155966 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0035129.1 MGP_C57BL6NJ_G0020079.1 mouse_genomes_project 12 35273477 35274928 + MGP_C57BL6NJ_P0035129 Gm5434 protein_coding protein_coding MGP_C57BL6NJ_T0000992.1 MGP_C57BL6NJ_G0000902.1 mouse_genomes_project 12 85943326 85944637 - TEC TEC MGP_C57BL6NJ_T0011593.1 MGP_C57BL6NJ_G0009678.1 mouse_genomes_project 12 90019868 90019953 + Gm27993 misc_RNA misc_RNA MGP_C57BL6NJ_T0006584.1 MGP_C57BL6NJ_G0005481.1 mouse_genomes_project 12 59848569 59865541 + Gm17529 lincRNA lincRNA MGP_C57BL6NJ_T0035284.1 MGP_C57BL6NJ_G0020146.1 mouse_genomes_project 12 57301493 57304564 - MGP_C57BL6NJ_P0035284 Nkx2-1 protein_coding protein_coding MGP_C57BL6NJ_T0035285.1 MGP_C57BL6NJ_G0020146.1 mouse_genomes_project 12 57301493 57307631 - MGP_C57BL6NJ_P0035285 Nkx2-1 protein_coding protein_coding MGP_C57BL6NJ_T0036456.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117770037 117782401 - MGP_C57BL6NJ_P0036456 Xrcc3 protein_coding protein_coding MGP_C57BL6NJ_T0036457.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117770037 117779031 - MGP_C57BL6NJ_P0036457 Xrcc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036458.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117771744 117779031 - Xrcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0036459.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117771810 117776812 - Xrcc3 protein_coding retained_intron MGP_C57BL6NJ_T0036460.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117771905 117782433 - Xrcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0036462.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117776595 117779051 - Xrcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0036463.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117776730 117782412 - Xrcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0036464.1 MGP_C57BL6NJ_G0020528.1 mouse_genomes_project 12 117778333 117779051 - Xrcc3 protein_coding processed_transcript MGP_C57BL6NJ_T0003563.1 MGP_C57BL6NJ_G0003258.1 mouse_genomes_project 12 86696475 86698469 - Gm29361 antisense antisense MGP_C57BL6NJ_T0036265.1 MGP_C57BL6NJ_G0020469.1 mouse_genomes_project 12 110154458 110162680 + MGP_C57BL6NJ_P0036265 Glrx5 protein_coding protein_coding MGP_C57BL6NJ_T0036417.1 MGP_C57BL6NJ_G0020517.1 mouse_genomes_project 12 117324449 117329736 + MGP_C57BL6NJ_P0036417 A230065H16Rik protein_coding protein_coding MGP_C57BL6NJ_T0000388.1 MGP_C57BL6NJ_G0000307.1 mouse_genomes_project 12 122339669 122340103 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000086.1 MGP_C57BL6NJ_G0000068.1 mouse_genomes_project 12 120070383 120070829 - MGP_C57BL6NJ_P0000086 Ighv2-9 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0099828.1 MGP_C57BL6NJ_G0037874.1 mouse_genomes_project 12 55305597 55305761 + Gm22634 snRNA snRNA MGP_C57BL6NJ_T0101146.1 MGP_C57BL6NJ_G0039192.1 mouse_genomes_project 12 115306890 115306962 + DQ267102 snoRNA snoRNA MGP_C57BL6NJ_T0000127.1 MGP_C57BL6NJ_G0000097.1 mouse_genomes_project 12 120735502 120735960 - MGP_C57BL6NJ_P0000127 Ighv6-7 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035497.1 MGP_C57BL6NJ_G0020219.1 mouse_genomes_project 12 74887499 74924905 + MGP_C57BL6NJ_P0035497 Ppm1a protein_coding protein_coding MGP_C57BL6NJ_T0035902.1 MGP_C57BL6NJ_G0020351.1 mouse_genomes_project 12 88974856 88998939 + MGP_C57BL6NJ_P0035902 Batf protein_coding protein_coding MGP_C57BL6NJ_T0035639.1 MGP_C57BL6NJ_G0020274.1 mouse_genomes_project 12 82808494 82813763 - MGP_C57BL6NJ_P0035639 Zfp36l1 protein_coding protein_coding MGP_C57BL6NJ_T0035640.1 MGP_C57BL6NJ_G0020274.1 mouse_genomes_project 12 82809439 82813748 - MGP_C57BL6NJ_P0035640 Zfp36l1 protein_coding protein_coding MGP_C57BL6NJ_T0036005.1 MGP_C57BL6NJ_G0020383.1 mouse_genomes_project 12 91923006 91928907 - MGP_C57BL6NJ_P0036005 Gm7104 protein_coding protein_coding MGP_C57BL6NJ_T0000088.1 MGP_C57BL6NJ_G0000070.1 mouse_genomes_project 12 120106511 120106970 - MGP_C57BL6NJ_P0000088 Ighv7-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000089.1 MGP_C57BL6NJ_G0000070.1 mouse_genomes_project 12 120106511 120106970 - MGP_C57BL6NJ_P0000089 Ighv7-2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034820.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1825592 1837508 - Mfsd2b protein_coding retained_intron MGP_C57BL6NJ_T0034821.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1825592 1837511 - MGP_C57BL6NJ_P0034821 Mfsd2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034822.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1826224 1837498 - Mfsd2b protein_coding retained_intron MGP_C57BL6NJ_T0034823.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1826224 1837511 - MGP_C57BL6NJ_P0034823 Mfsd2b protein_coding protein_coding MGP_C57BL6NJ_T0034824.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1826224 1837511 - MGP_C57BL6NJ_P0034824 Mfsd2b protein_coding protein_coding MGP_C57BL6NJ_T0034825.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1826717 1837512 - Mfsd2b protein_coding retained_intron MGP_C57BL6NJ_T0034826.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1830388 1832414 - Mfsd2b protein_coding retained_intron MGP_C57BL6NJ_T0034827.1 MGP_C57BL6NJ_G0019968.1 mouse_genomes_project 12 1832100 1837512 - MGP_C57BL6NJ_P0034827 Mfsd2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036100.1 MGP_C57BL6NJ_G0020404.1 mouse_genomes_project 12 104536747 104640989 + MGP_C57BL6NJ_P0036100 Kcnk13 protein_coding protein_coding MGP_C57BL6NJ_T0036101.1 MGP_C57BL6NJ_G0020404.1 mouse_genomes_project 12 104536747 104640989 + MGP_C57BL6NJ_P0036101 Kcnk13 protein_coding protein_coding MGP_C57BL6NJ_T0036102.1 MGP_C57BL6NJ_G0020404.1 mouse_genomes_project 12 104536753 104538529 + MGP_C57BL6NJ_P0036102 Kcnk13 protein_coding protein_coding MGP_C57BL6NJ_T0036103.1 MGP_C57BL6NJ_G0020404.1 mouse_genomes_project 12 104536773 104640981 + MGP_C57BL6NJ_P0036103 Kcnk13 protein_coding protein_coding MGP_C57BL6NJ_T0035267.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55960294 56050876 + MGP_C57BL6NJ_P0035267 1110008L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0035268.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55963354 56050952 + MGP_C57BL6NJ_P0035268 1110008L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0035269.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55963467 55970562 + 1110008L16Rik protein_coding retained_intron MGP_C57BL6NJ_T0035270.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55963960 56050969 + MGP_C57BL6NJ_P0035270 1110008L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0035271.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55963978 56050989 + MGP_C57BL6NJ_P0035271 1110008L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0035272.1 MGP_C57BL6NJ_G0020138.1 mouse_genomes_project 12 55964003 56050969 + MGP_C57BL6NJ_P0035272 1110008L16Rik protein_coding protein_coding MGP_C57BL6NJ_T0099851.1 MGP_C57BL6NJ_G0037897.1 mouse_genomes_project 12 90023550 90023657 + Gm22004 snRNA snRNA MGP_C57BL6NJ_T0010015.1 MGP_C57BL6NJ_G0008100.1 mouse_genomes_project 12 95665410 95665475 - Gm22015 miRNA miRNA MGP_C57BL6NJ_T0010037.1 MGP_C57BL6NJ_G0008122.1 mouse_genomes_project 12 115239786 115239910 + Mir433 miRNA miRNA MGP_C57BL6NJ_T0101112.1 MGP_C57BL6NJ_G0039158.1 mouse_genomes_project 12 56991128 56991258 - Gm25917 snoRNA snoRNA MGP_C57BL6NJ_T0035632.1 MGP_C57BL6NJ_G0020271.1 mouse_genomes_project 12 81841583 81855334 + MGP_C57BL6NJ_P0035632 Rdh12 protein_coding protein_coding MGP_C57BL6NJ_T0035633.1 MGP_C57BL6NJ_G0020271.1 mouse_genomes_project 12 81841600 81855333 + MGP_C57BL6NJ_P0035633 Rdh12 protein_coding protein_coding MGP_C57BL6NJ_T0035634.1 MGP_C57BL6NJ_G0020271.1 mouse_genomes_project 12 81841616 81855333 + Rdh12 protein_coding retained_intron MGP_C57BL6NJ_T0035635.1 MGP_C57BL6NJ_G0020271.1 mouse_genomes_project 12 81843330 81845425 + MGP_C57BL6NJ_P0035635 Rdh12 protein_coding protein_coding MGP_C57BL6NJ_T0036565.1 MGP_C57BL6NJ_G0020568.1 mouse_genomes_project 12 123042326 123106161 + MGP_C57BL6NJ_P0036565 Ncapg2 protein_coding protein_coding MGP_C57BL6NJ_T0035034.1 MGP_C57BL6NJ_G0020045.1 mouse_genomes_project 12 29707098 29726968 - MGP_C57BL6NJ_P0035034 Acp1 protein_coding protein_coding MGP_C57BL6NJ_T0011580.1 MGP_C57BL6NJ_G0009665.1 mouse_genomes_project 12 9195238 9195546 - Gm23781 misc_RNA misc_RNA MGP_C57BL6NJ_T0000068.1 MGP_C57BL6NJ_G0000055.1 mouse_genomes_project 12 119694896 119697200 - MGP_C57BL6NJ_P0000068 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035258.1 MGP_C57BL6NJ_G0020131.1 mouse_genomes_project 12 55715857 55734985 + MGP_C57BL6NJ_P0035258 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0036321.1 MGP_C57BL6NJ_G0020488.1 mouse_genomes_project 12 113801336 113830190 + MGP_C57BL6NJ_P0036321 Hhipl1 protein_coding protein_coding MGP_C57BL6NJ_T0035387.1 MGP_C57BL6NJ_G0020180.1 mouse_genomes_project 12 71053624 71056282 + MGP_C57BL6NJ_P0035387 9330151L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0000033.1 MGP_C57BL6NJ_G0000025.1 mouse_genomes_project 12 119530232 119530261 - MGP_C57BL6NJ_P0000033 Gm37327 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0010077.1 MGP_C57BL6NJ_G0008162.1 mouse_genomes_project 12 115388075 115388151 + Mir382 miRNA miRNA MGP_C57BL6NJ_T0099836.1 MGP_C57BL6NJ_G0037882.1 mouse_genomes_project 12 63113233 63113337 + Gm24750 snRNA snRNA MGP_C57BL6NJ_T0036173.1 MGP_C57BL6NJ_G0020429.1 mouse_genomes_project 12 107637754 107641556 + MGP_C57BL6NJ_P0036173 Tmem251 protein_coding protein_coding MGP_C57BL6NJ_T0013111.1 MGP_C57BL6NJ_G0011156.1 mouse_genomes_project 12 56065363 56065886 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034897.1 MGP_C57BL6NJ_G0019999.1 mouse_genomes_project 12 13609810 13634870 - MGP_C57BL6NJ_P0034897 Trib2 protein_coding protein_coding MGP_C57BL6NJ_T0034898.1 MGP_C57BL6NJ_G0019999.1 mouse_genomes_project 12 13633968 13634962 - Trib2 protein_coding processed_transcript MGP_C57BL6NJ_T0000039.1 MGP_C57BL6NJ_G0000031.1 mouse_genomes_project 12 119612470 119612493 - MGP_C57BL6NJ_P0000039 Gm16968 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0035455.1 MGP_C57BL6NJ_G0020204.1 mouse_genomes_project 12 73048241 73131511 + MGP_C57BL6NJ_P0035455 Arid4a protein_coding protein_coding MGP_C57BL6NJ_T0035456.1 MGP_C57BL6NJ_G0020204.1 mouse_genomes_project 12 73048280 73104371 + Arid4a protein_coding processed_transcript MGP_C57BL6NJ_T0035457.1 MGP_C57BL6NJ_G0020204.1 mouse_genomes_project 12 73048959 73082202 + MGP_C57BL6NJ_P0035457 Arid4a protein_coding protein_coding MGP_C57BL6NJ_T0035458.1 MGP_C57BL6NJ_G0020204.1 mouse_genomes_project 12 73083203 73112309 + MGP_C57BL6NJ_P0035458 Arid4a protein_coding protein_coding MGP_C57BL6NJ_T0000340.1 MGP_C57BL6NJ_G0000259.1 mouse_genomes_project 12 120067083 120067527 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101142.1 MGP_C57BL6NJ_G0039188.1 mouse_genomes_project 12 115300162 115300234 + DQ267100 snoRNA snoRNA MGP_C57BL6NJ_T0099813.1 MGP_C57BL6NJ_G0037859.1 mouse_genomes_project 12 10277829 10277936 + Gm25538 snRNA snRNA MGP_C57BL6NJ_T0036526.1 MGP_C57BL6NJ_G0020557.1 mouse_genomes_project 12 119141485 119178646 + MGP_C57BL6NJ_P0036526 Mta1 protein_coding protein_coding MGP_C57BL6NJ_T0036527.1 MGP_C57BL6NJ_G0020557.1 mouse_genomes_project 12 119153775 119178100 + Mta1 protein_coding processed_transcript MGP_C57BL6NJ_T0036528.1 MGP_C57BL6NJ_G0020557.1 mouse_genomes_project 12 119172762 119174811 + Mta1 protein_coding processed_transcript MGP_C57BL6NJ_T0036529.1 MGP_C57BL6NJ_G0020557.1 mouse_genomes_project 12 119172978 119174769 + Mta1 protein_coding processed_transcript MGP_C57BL6NJ_T0010097.1 MGP_C57BL6NJ_G0008182.1 mouse_genomes_project 12 118686601 118686676 - Mir6939 miRNA miRNA MGP_C57BL6NJ_T0099843.1 MGP_C57BL6NJ_G0037889.1 mouse_genomes_project 12 72665804 72665905 + Gm24474 snRNA snRNA MGP_C57BL6NJ_T0006609.1 MGP_C57BL6NJ_G0005502.1 mouse_genomes_project 12 94570601 94588264 + Gm26512 lincRNA lincRNA MGP_C57BL6NJ_T0101104.1 MGP_C57BL6NJ_G0039150.1 mouse_genomes_project 12 38998178 38998305 + Gm24069 snoRNA snoRNA MGP_C57BL6NJ_T0101114.1 MGP_C57BL6NJ_G0039160.1 mouse_genomes_project 12 60058723 60058845 + Gm24233 snoRNA snoRNA MGP_C57BL6NJ_T0006597.1 MGP_C57BL6NJ_G0005490.1 mouse_genomes_project 12 83246960 83255926 - Gm26777 lincRNA lincRNA MGP_C57BL6NJ_T0003541.1 MGP_C57BL6NJ_G0003240.1 mouse_genomes_project 12 39775610 39778060 + Gm17056 antisense antisense MGP_C57BL6NJ_T0000171.1 MGP_C57BL6NJ_G0000129.1 mouse_genomes_project 12 122080804 122081241 - MGP_C57BL6NJ_P0000171 Ighv1-67 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000172.1 MGP_C57BL6NJ_G0000129.1 mouse_genomes_project 12 122080804 122081098 - MGP_C57BL6NJ_P0000172 Ighv1-67 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000153.1 MGP_C57BL6NJ_G0000114.1 mouse_genomes_project 12 121409199 121409633 - MGP_C57BL6NJ_P0000153 Ighv1-49 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000154.1 MGP_C57BL6NJ_G0000114.1 mouse_genomes_project 12 121409199 121409493 - MGP_C57BL6NJ_P0000154 Ighv1-49 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000169.1 MGP_C57BL6NJ_G0000127.1 mouse_genomes_project 12 121965574 121966062 - MGP_C57BL6NJ_P0000169 Ighv1-62-3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035248.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55508657 55602072 - MGP_C57BL6NJ_P0035248 Baz1a protein_coding protein_coding MGP_C57BL6NJ_T0035249.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55537708 55544956 - MGP_C57BL6NJ_P0035249 Baz1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035250.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55554967 55558609 - MGP_C57BL6NJ_P0035250 Baz1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035251.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55570693 55632861 - MGP_C57BL6NJ_P0035251 Baz1a protein_coding protein_coding MGP_C57BL6NJ_T0035252.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55591042 55601750 - MGP_C57BL6NJ_P0035252 Baz1a protein_coding protein_coding MGP_C57BL6NJ_T0035253.1 MGP_C57BL6NJ_G0020128.1 mouse_genomes_project 12 55591057 55615320 - MGP_C57BL6NJ_P0035253 Baz1a protein_coding protein_coding MGP_C57BL6NJ_T0035611.1 MGP_C57BL6NJ_G0020258.1 mouse_genomes_project 12 80167298 80169128 - MGP_C57BL6NJ_P0035611 protein_coding protein_coding MGP_C57BL6NJ_T0034865.1 MGP_C57BL6NJ_G0019980.1 mouse_genomes_project 12 6192803 6209720 + MGP_C57BL6NJ_P0034865 Laptm4a protein_coding protein_coding MGP_C57BL6NJ_T0009980.1 MGP_C57BL6NJ_G0008065.1 mouse_genomes_project 12 15276689 15276772 + Mir3066 miRNA miRNA MGP_C57BL6NJ_T0000349.1 MGP_C57BL6NJ_G0000268.1 mouse_genomes_project 12 120398807 120399083 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0000381.1 MGP_C57BL6NJ_G0000300.1 mouse_genomes_project 12 121696890 121697323 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035070.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30838248 30866198 - MGP_C57BL6NJ_P0035070 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035071.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30841372 30865886 - MGP_C57BL6NJ_P0035071 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035072.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30842802 30855116 - MGP_C57BL6NJ_P0035072 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035073.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30842913 30848633 - Hbp1 protein_coding retained_intron MGP_C57BL6NJ_T0035074.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30844822 30865271 - MGP_C57BL6NJ_P0035074 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035075.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30846331 30865833 - MGP_C57BL6NJ_P0035075 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035076.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30850288 30865884 - MGP_C57BL6NJ_P0035076 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035077.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30850874 30865873 - MGP_C57BL6NJ_P0035077 Hbp1 protein_coding protein_coding MGP_C57BL6NJ_T0035078.1 MGP_C57BL6NJ_G0020058.1 mouse_genomes_project 12 30853580 30865897 - Hbp1 protein_coding retained_intron MGP_C57BL6NJ_T0036307.1 MGP_C57BL6NJ_G0020483.1 mouse_genomes_project 12 112877788 112878793 + MGP_C57BL6NJ_P0036307 3110018I06Rik protein_coding protein_coding MGP_C57BL6NJ_T0035355.1 MGP_C57BL6NJ_G0020165.1 mouse_genomes_project 12 65933118 65936756 - MGP_C57BL6NJ_P0035355 Fscb protein_coding protein_coding MGP_C57BL6NJ_T0013137.1 MGP_C57BL6NJ_G0011182.1 mouse_genomes_project 12 91241203 91242145 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035903.1 MGP_C57BL6NJ_G0020352.1 mouse_genomes_project 12 89042530 89112780 + MGP_C57BL6NJ_P0035903 Mfsd7c protein_coding protein_coding MGP_C57BL6NJ_T0035358.1 MGP_C57BL6NJ_G0020168.1 mouse_genomes_project 12 66481225 66541791 + MGP_C57BL6NJ_P0035358 Fam179b protein_coding protein_coding MGP_C57BL6NJ_T0035217.1 MGP_C57BL6NJ_G0020111.1 mouse_genomes_project 12 51732870 51810089 + MGP_C57BL6NJ_P0035217 Scfd1 protein_coding protein_coding MGP_C57BL6NJ_T0000111.1 MGP_C57BL6NJ_G0000087.1 mouse_genomes_project 12 120525232 120525668 - MGP_C57BL6NJ_P0000111 Ighv3-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000112.1 MGP_C57BL6NJ_G0000087.1 mouse_genomes_project 12 120525232 120525531 - MGP_C57BL6NJ_P0000112 Ighv3-5 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035409.1 MGP_C57BL6NJ_G0020190.1 mouse_genomes_project 12 71658873 71679758 + MGP_C57BL6NJ_P0035409 Atp5s protein_coding protein_coding MGP_C57BL6NJ_T0006552.1 MGP_C57BL6NJ_G0005457.1 mouse_genomes_project 12 637775 638033 + lincRNA lincRNA MGP_C57BL6NJ_T0099819.1 MGP_C57BL6NJ_G0037865.1 mouse_genomes_project 12 31972078 31972180 - Gm24922 snRNA snRNA MGP_C57BL6NJ_T0035615.1 MGP_C57BL6NJ_G0020260.1 mouse_genomes_project 12 81289149 81337278 + MGP_C57BL6NJ_P0035615 Fam71d protein_coding protein_coding MGP_C57BL6NJ_T0013117.1 MGP_C57BL6NJ_G0011162.1 mouse_genomes_project 12 60226401 60227376 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034917.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14882653 14894600 - Pqlc3 protein_coding retained_intron MGP_C57BL6NJ_T0034918.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14882653 14894686 - MGP_C57BL6NJ_P0034918 Pqlc3 protein_coding protein_coding MGP_C57BL6NJ_T0034919.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14887528 14894593 - MGP_C57BL6NJ_P0034919 Pqlc3 protein_coding protein_coding MGP_C57BL6NJ_T0034920.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14888077 14894594 - Pqlc3 protein_coding processed_transcript MGP_C57BL6NJ_T0034921.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14888222 14894684 - MGP_C57BL6NJ_P0034921 Pqlc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034922.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14890209 14894976 - Pqlc3 protein_coding processed_transcript MGP_C57BL6NJ_T0034923.1 MGP_C57BL6NJ_G0020005.1 mouse_genomes_project 12 14890209 14894976 - Pqlc3 protein_coding processed_transcript MGP_C57BL6NJ_T0034891.1 MGP_C57BL6NJ_G0019995.1 mouse_genomes_project 12 10540845 10546664 - MGP_C57BL6NJ_P0034891 Mycn protein_coding protein_coding MGP_C57BL6NJ_T0034892.1 MGP_C57BL6NJ_G0019995.1 mouse_genomes_project 12 10540845 10545366 - MGP_C57BL6NJ_P0034892 Mycn protein_coding protein_coding MGP_C57BL6NJ_T0034893.1 MGP_C57BL6NJ_G0019995.1 mouse_genomes_project 12 10545693 10546575 - Mycn protein_coding processed_transcript MGP_C57BL6NJ_T0034860.1 MGP_C57BL6NJ_G0019979.1 mouse_genomes_project 12 6021991 6046481 + MGP_C57BL6NJ_P0034860 Sdc1 protein_coding protein_coding MGP_C57BL6NJ_T0034861.1 MGP_C57BL6NJ_G0019979.1 mouse_genomes_project 12 6021992 6040547 + Sdc1 protein_coding retained_intron MGP_C57BL6NJ_T0034862.1 MGP_C57BL6NJ_G0019979.1 mouse_genomes_project 12 6022081 6045828 + MGP_C57BL6NJ_P0034862 Sdc1 protein_coding protein_coding MGP_C57BL6NJ_T0034863.1 MGP_C57BL6NJ_G0019979.1 mouse_genomes_project 12 6022410 6041506 + MGP_C57BL6NJ_P0034863 Sdc1 protein_coding protein_coding MGP_C57BL6NJ_T0034864.1 MGP_C57BL6NJ_G0019979.1 mouse_genomes_project 12 6022471 6041112 + Sdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0013147.1 MGP_C57BL6NJ_G0011192.1 mouse_genomes_project 12 106750941 106751401 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006650.1 MGP_C57BL6NJ_G0005531.1 mouse_genomes_project 12 115348692 115355694 + B830012L14Rik lincRNA lincRNA MGP_C57BL6NJ_T0035085.1 MGP_C57BL6NJ_G0020062.1 mouse_genomes_project 12 31782703 31816635 + MGP_C57BL6NJ_P0035085 Nampt protein_coding protein_coding MGP_C57BL6NJ_T0035203.1 MGP_C57BL6NJ_G0020104.1 mouse_genomes_project 12 49549398 49551048 + Foxg1 protein_coding processed_transcript MGP_C57BL6NJ_T0035204.1 MGP_C57BL6NJ_G0020104.1 mouse_genomes_project 12 49549538 49550339 + Foxg1 protein_coding processed_transcript MGP_C57BL6NJ_T0035205.1 MGP_C57BL6NJ_G0020104.1 mouse_genomes_project 12 49549621 49553539 + MGP_C57BL6NJ_P0035205 Foxg1 protein_coding protein_coding MGP_C57BL6NJ_T0035206.1 MGP_C57BL6NJ_G0020104.1 mouse_genomes_project 12 49549745 49553545 + MGP_C57BL6NJ_P0035206 Foxg1 protein_coding protein_coding MGP_C57BL6NJ_T0034830.1 MGP_C57BL6NJ_G0019970.1 mouse_genomes_project 12 1885507 2017907 + MGP_C57BL6NJ_P0034830 Atad2b protein_coding protein_coding MGP_C57BL6NJ_T0034831.1 MGP_C57BL6NJ_G0019970.1 mouse_genomes_project 12 1885812 2021262 + MGP_C57BL6NJ_P0034831 Atad2b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035005.1 MGP_C57BL6NJ_G0020034.1 mouse_genomes_project 12 27319496 27324595 - MGP_C57BL6NJ_P0035005 Rps7 protein_coding protein_coding MGP_C57BL6NJ_T0034874.1 MGP_C57BL6NJ_G0019983.1 mouse_genomes_project 12 6310614 6317012 + MGP_C57BL6NJ_P0034874 Ttc32 protein_coding protein_coding MGP_C57BL6NJ_T0099814.1 MGP_C57BL6NJ_G0037860.1 mouse_genomes_project 12 11148639 11148746 - Gm24142 snRNA snRNA MGP_C57BL6NJ_T0000391.1 MGP_C57BL6NJ_G0000310.1 mouse_genomes_project 12 122473857 122474290 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0006587.1 MGP_C57BL6NJ_G0005484.1 mouse_genomes_project 12 73427104 73428159 - 1700083H02Rik lincRNA lincRNA MGP_C57BL6NJ_T0036489.1 MGP_C57BL6NJ_G0020540.1 mouse_genomes_project 12 118644449 118665718 + MGP_C57BL6NJ_P0036489 Adssl1 protein_coding protein_coding MGP_C57BL6NJ_T0036490.1 MGP_C57BL6NJ_G0020540.1 mouse_genomes_project 12 118644451 118665733 + MGP_C57BL6NJ_P0036490 Adssl1 protein_coding protein_coding MGP_C57BL6NJ_T0036469.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 117959173 118052842 + MGP_C57BL6NJ_P0036469 Tdrd9 protein_coding protein_coding MGP_C57BL6NJ_T0036475.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 117981309 118052338 + MGP_C57BL6NJ_P0036475 Tdrd9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036476.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 117981309 118052338 + MGP_C57BL6NJ_P0036476 Tdrd9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036477.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 118001933 118015912 + Tdrd9 protein_coding retained_intron MGP_C57BL6NJ_T0036478.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 118016355 118030743 + Tdrd9 protein_coding processed_transcript MGP_C57BL6NJ_T0036479.1 MGP_C57BL6NJ_G0020532.1 mouse_genomes_project 12 118047141 118051608 + Tdrd9 protein_coding retained_intron MGP_C57BL6NJ_T0000133.1 MGP_C57BL6NJ_G0000103.1 mouse_genomes_project 12 120853748 120854219 - MGP_C57BL6NJ_P0000133 Ighv1-7 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034928.1 MGP_C57BL6NJ_G0020008.1 mouse_genomes_project 12 15174343 15189579 + Pdia6 protein_coding retained_intron MGP_C57BL6NJ_T0034929.1 MGP_C57BL6NJ_G0020008.1 mouse_genomes_project 12 15174343 15192539 + MGP_C57BL6NJ_P0034929 Pdia6 protein_coding protein_coding MGP_C57BL6NJ_T0034930.1 MGP_C57BL6NJ_G0020008.1 mouse_genomes_project 12 15174406 15181993 + Pdia6 protein_coding processed_transcript MGP_C57BL6NJ_T0034931.1 MGP_C57BL6NJ_G0020008.1 mouse_genomes_project 12 15181640 15185416 + Pdia6 protein_coding retained_intron MGP_C57BL6NJ_T0034932.1 MGP_C57BL6NJ_G0020008.1 mouse_genomes_project 12 15185009 15186709 + Pdia6 protein_coding processed_transcript MGP_C57BL6NJ_T0035649.1 MGP_C57BL6NJ_G0020280.1 mouse_genomes_project 12 83395339 83438337 + MGP_C57BL6NJ_P0035649 Slc39a9 protein_coding protein_coding MGP_C57BL6NJ_T0000161.1 MGP_C57BL6NJ_G0000120.1 mouse_genomes_project 12 121715069 121715512 - MGP_C57BL6NJ_P0000161 Ighv8-8 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000375.1 MGP_C57BL6NJ_G0000294.1 mouse_genomes_project 12 121354937 121355232 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035048.1 MGP_C57BL6NJ_G0020050.1 mouse_genomes_project 12 30172259 30194259 - MGP_C57BL6NJ_P0035048 Dld protein_coding protein_coding MGP_C57BL6NJ_T0099820.1 MGP_C57BL6NJ_G0037866.1 mouse_genomes_project 12 34589288 34589395 + Gm26071 snRNA snRNA MGP_C57BL6NJ_T0010079.1 MGP_C57BL6NJ_G0008164.1 mouse_genomes_project 12 115389036 115389102 + Mir668 miRNA miRNA MGP_C57BL6NJ_T0000331.1 MGP_C57BL6NJ_G0000250.1 mouse_genomes_project 12 119733476 119733929 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0017775.1 MGP_C57BL6NJ_G0015630.1 mouse_genomes_project 12 104793308 104800340 + Gm10433 processed_transcript processed_transcript MGP_C57BL6NJ_T0017776.1 MGP_C57BL6NJ_G0015630.1 mouse_genomes_project 12 104794113 104799545 + Gm10433 processed_transcript processed_transcript MGP_C57BL6NJ_T0099844.1 MGP_C57BL6NJ_G0037890.1 mouse_genomes_project 12 78877779 78877853 - Gm25563 snRNA snRNA MGP_C57BL6NJ_T0013119.1 MGP_C57BL6NJ_G0011164.1 mouse_genomes_project 12 62599638 62600167 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010100.1 MGP_C57BL6NJ_G0008185.1 mouse_genomes_project 12 119104973 119105073 - Gm44471 miRNA miRNA MGP_C57BL6NJ_T0000364.1 MGP_C57BL6NJ_G0000283.1 mouse_genomes_project 12 121110605 121111030 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035904.1 MGP_C57BL6NJ_G0020353.1 mouse_genomes_project 12 89114654 89123750 - MGP_C57BL6NJ_P0035904 0610007P14Rik protein_coding protein_coding MGP_C57BL6NJ_T0035905.1 MGP_C57BL6NJ_G0020353.1 mouse_genomes_project 12 89114865 89123740 - 0610007P14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0035906.1 MGP_C57BL6NJ_G0020353.1 mouse_genomes_project 12 89118324 89123772 - 0610007P14Rik protein_coding retained_intron MGP_C57BL6NJ_T0035907.1 MGP_C57BL6NJ_G0020353.1 mouse_genomes_project 12 89118559 89121478 - 0610007P14Rik protein_coding retained_intron MGP_C57BL6NJ_T0035908.1 MGP_C57BL6NJ_G0020353.1 mouse_genomes_project 12 89118766 89123778 - MGP_C57BL6NJ_P0035908 0610007P14Rik protein_coding protein_coding MGP_C57BL6NJ_T0000392.1 MGP_C57BL6NJ_G0000311.1 mouse_genomes_project 12 122527426 122527738 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036378.1 MGP_C57BL6NJ_G0020504.1 mouse_genomes_project 12 116427007 116444198 - MGP_C57BL6NJ_P0036378 1700001K19Rik protein_coding protein_coding MGP_C57BL6NJ_T0000369.1 MGP_C57BL6NJ_G0000288.1 mouse_genomes_project 12 121250639 121251072 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0036320.1 MGP_C57BL6NJ_G0020487.1 mouse_genomes_project 12 113682264 113762058 - MGP_C57BL6NJ_P0036320 Ccdc85c protein_coding protein_coding MGP_C57BL6NJ_T0099848.1 MGP_C57BL6NJ_G0037894.1 mouse_genomes_project 12 81739073 81739178 - Gm27297 snRNA snRNA MGP_C57BL6NJ_T0034737.1 MGP_C57BL6NJ_G0019947.1 mouse_genomes_project 12 38417 110869 - MGP_C57BL6NJ_P0034737 Rab10 protein_coding protein_coding MGP_C57BL6NJ_T0003553.1 MGP_C57BL6NJ_G0003249.1 mouse_genomes_project 12 73023567 73047848 - 3110056K07Rik antisense antisense MGP_C57BL6NJ_T0003554.1 MGP_C57BL6NJ_G0003249.1 mouse_genomes_project 12 73042047 73048084 - 3110056K07Rik antisense antisense MGP_C57BL6NJ_T0099854.1 MGP_C57BL6NJ_G0037900.1 mouse_genomes_project 12 103038900 103038963 + Gm25486 snRNA snRNA MGP_C57BL6NJ_T0013160.1 MGP_C57BL6NJ_G0011205.1 mouse_genomes_project 12 119445389 119445843 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0034927.1 MGP_C57BL6NJ_G0020007.1 mouse_genomes_project 12 15082119 15086908 - MGP_C57BL6NJ_P0034927 Kcnf1 protein_coding protein_coding MGP_C57BL6NJ_T0036260.1 MGP_C57BL6NJ_G0020465.1 mouse_genomes_project 12 109808782 109872324 - MGP_C57BL6NJ_P0036260 Dicer1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035514.1 MGP_C57BL6NJ_G0020224.1 mouse_genomes_project 12 75280951 75445312 + MGP_C57BL6NJ_P0035514 Mnat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035515.1 MGP_C57BL6NJ_G0020224.1 mouse_genomes_project 12 75280951 75446449 + MGP_C57BL6NJ_P0035515 Mnat1 protein_coding protein_coding MGP_C57BL6NJ_T0035516.1 MGP_C57BL6NJ_G0020224.1 mouse_genomes_project 12 75280951 75402061 + MGP_C57BL6NJ_P0035516 Mnat1 protein_coding protein_coding MGP_C57BL6NJ_T0035517.1 MGP_C57BL6NJ_G0020224.1 mouse_genomes_project 12 75281072 75444995 + MGP_C57BL6NJ_P0035517 Mnat1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006579.1 MGP_C57BL6NJ_G0005478.1 mouse_genomes_project 12 49659624 49663496 - 1810007C17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006569.1 MGP_C57BL6NJ_G0005470.1 mouse_genomes_project 12 29203672 29260092 - 2310016D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0101129.1 MGP_C57BL6NJ_G0039175.1 mouse_genomes_project 12 90891679 90891815 - Mir3068 snoRNA snoRNA MGP_C57BL6NJ_T0010102.1 MGP_C57BL6NJ_G0008187.1 mouse_genomes_project 12 120749287 120749347 - Mir7094-2 miRNA miRNA MGP_C57BL6NJ_T0010048.1 MGP_C57BL6NJ_G0008133.1 mouse_genomes_project 12 115363110 115363176 + Mir379 miRNA miRNA MGP_C57BL6NJ_T0035886.1 MGP_C57BL6NJ_G0020344.1 mouse_genomes_project 12 88478689 88522151 - MGP_C57BL6NJ_P0035886 Mlh3 protein_coding protein_coding MGP_C57BL6NJ_T0035887.1 MGP_C57BL6NJ_G0020344.1 mouse_genomes_project 12 88478689 88522124 - MGP_C57BL6NJ_P0035887 Mlh3 protein_coding protein_coding MGP_C57BL6NJ_T0035893.1 MGP_C57BL6NJ_G0020347.1 mouse_genomes_project 12 88556189 88600819 - MGP_C57BL6NJ_P0035893 Nek9 protein_coding protein_coding MGP_C57BL6NJ_T0101094.1 MGP_C57BL6NJ_G0039140.1 mouse_genomes_project 12 15503206 15503342 + Gm22748 snoRNA snoRNA MGP_C57BL6NJ_T0000367.1 MGP_C57BL6NJ_G0000286.1 mouse_genomes_project 12 121153099 121153532 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0010072.1 MGP_C57BL6NJ_G0008157.1 mouse_genomes_project 12 115381579 115381661 + Mir487b miRNA miRNA MGP_C57BL6NJ_T0101113.1 MGP_C57BL6NJ_G0039159.1 mouse_genomes_project 12 57322019 57322151 + Gm25760 snoRNA snoRNA MGP_C57BL6NJ_T0035389.1 MGP_C57BL6NJ_G0020182.1 mouse_genomes_project 12 71100167 71101632 + Klhdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0035390.1 MGP_C57BL6NJ_G0020182.1 mouse_genomes_project 12 71100823 71148914 + MGP_C57BL6NJ_P0035390 Klhdc1 protein_coding protein_coding MGP_C57BL6NJ_T0035391.1 MGP_C57BL6NJ_G0020182.1 mouse_genomes_project 12 71100905 71101634 + Klhdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0035392.1 MGP_C57BL6NJ_G0020182.1 mouse_genomes_project 12 71100909 71147601 + MGP_C57BL6NJ_P0035392 Klhdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035345.1 MGP_C57BL6NJ_G0020162.1 mouse_genomes_project 12 60129518 60150553 - MGP_C57BL6NJ_P0035345 Fbxo33 protein_coding protein_coding MGP_C57BL6NJ_T0035346.1 MGP_C57BL6NJ_G0020162.1 mouse_genomes_project 12 60129520 60133300 - MGP_C57BL6NJ_P0035346 Fbxo33 protein_coding protein_coding MGP_C57BL6NJ_T0035347.1 MGP_C57BL6NJ_G0020162.1 mouse_genomes_project 12 60129521 60134553 - Fbxo33 protein_coding retained_intron MGP_C57BL6NJ_T0035348.1 MGP_C57BL6NJ_G0020162.1 mouse_genomes_project 12 60133415 60149629 - MGP_C57BL6NJ_P0035348 Fbxo33 protein_coding protein_coding MGP_C57BL6NJ_T0011597.1 MGP_C57BL6NJ_G0009682.1 mouse_genomes_project 12 108053670 108053832 + Gm27976 misc_RNA misc_RNA MGP_C57BL6NJ_T0036430.1 MGP_C57BL6NJ_G0020520.1 mouse_genomes_project 12 117404264 117405477 - MGP_C57BL6NJ_P0036430 Gm266 protein_coding protein_coding MGP_C57BL6NJ_T0000076.1 MGP_C57BL6NJ_G0000061.1 mouse_genomes_project 12 119937139 119937599 - MGP_C57BL6NJ_P0000076 Ighv5-12-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0013104.1 MGP_C57BL6NJ_G0011149.1 mouse_genomes_project 12 30273025 30275683 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035784.1 MGP_C57BL6NJ_G0020315.1 mouse_genomes_project 12 87223497 87235555 + MGP_C57BL6NJ_P0035784 Acot6 protein_coding protein_coding MGP_C57BL6NJ_T0036278.1 MGP_C57BL6NJ_G0020475.1 mouse_genomes_project 12 110646265 110683199 + MGP_C57BL6NJ_P0036278 D430019H16Rik protein_coding protein_coding MGP_C57BL6NJ_T0000989.1 MGP_C57BL6NJ_G0000899.1 mouse_genomes_project 12 58389273 58394108 + TEC TEC MGP_C57BL6NJ_T0035386.1 MGP_C57BL6NJ_G0020179.1 mouse_genomes_project 12 71044616 71054843 - MGP_C57BL6NJ_P0035386 Dnaaf2 protein_coding protein_coding MGP_C57BL6NJ_T0036443.1 MGP_C57BL6NJ_G0020526.1 mouse_genomes_project 12 117663874 117689578 + MGP_C57BL6NJ_P0036443 Apopt1 protein_coding protein_coding MGP_C57BL6NJ_T0036444.1 MGP_C57BL6NJ_G0020526.1 mouse_genomes_project 12 117663893 117716296 + MGP_C57BL6NJ_P0036444 Apopt1 protein_coding protein_coding MGP_C57BL6NJ_T0036445.1 MGP_C57BL6NJ_G0020526.1 mouse_genomes_project 12 117663893 117711583 + MGP_C57BL6NJ_P0036445 Apopt1 protein_coding protein_coding MGP_C57BL6NJ_T0036446.1 MGP_C57BL6NJ_G0020526.1 mouse_genomes_project 12 117663897 117676874 + MGP_C57BL6NJ_P0036446 Apopt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036447.1 MGP_C57BL6NJ_G0020526.1 mouse_genomes_project 12 117663899 117681206 + MGP_C57BL6NJ_P0036447 Apopt1 protein_coding protein_coding MGP_C57BL6NJ_T0036439.1 MGP_C57BL6NJ_G0020525.1 mouse_genomes_project 12 117660103 117663871 - MGP_C57BL6NJ_P0036439 Bag5 protein_coding protein_coding MGP_C57BL6NJ_T0036440.1 MGP_C57BL6NJ_G0020525.1 mouse_genomes_project 12 117660519 117663541 - MGP_C57BL6NJ_P0036440 Bag5 protein_coding protein_coding MGP_C57BL6NJ_T0036441.1 MGP_C57BL6NJ_G0020525.1 mouse_genomes_project 12 117661824 117663567 - MGP_C57BL6NJ_P0036441 Bag5 protein_coding protein_coding MGP_C57BL6NJ_T0036442.1 MGP_C57BL6NJ_G0020525.1 mouse_genomes_project 12 117661890 117663567 - MGP_C57BL6NJ_P0036442 Bag5 protein_coding protein_coding MGP_C57BL6NJ_T0000115.1 MGP_C57BL6NJ_G0000089.1 mouse_genomes_project 12 120573992 120574286 - MGP_C57BL6NJ_P0000115 Ighv9-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000116.1 MGP_C57BL6NJ_G0000089.1 mouse_genomes_project 12 120573992 120574421 - MGP_C57BL6NJ_P0000116 Ighv9-4 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036048.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95680233 95723371 - MGP_C57BL6NJ_P0036048 Sel1l protein_coding protein_coding MGP_C57BL6NJ_T0036049.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95680233 95723371 - MGP_C57BL6NJ_P0036049 Sel1l protein_coding protein_coding MGP_C57BL6NJ_T0036050.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95680255 95688179 - Sel1l protein_coding processed_transcript MGP_C57BL6NJ_T0036051.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95680843 95723343 - MGP_C57BL6NJ_P0036051 Sel1l protein_coding protein_coding MGP_C57BL6NJ_T0036052.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95682865 95723344 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0036053.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95689722 95692467 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0036054.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95694199 95723344 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0036055.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95699096 95706151 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0036056.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95706388 95723353 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0036057.1 MGP_C57BL6NJ_G0020391.1 mouse_genomes_project 12 95715671 95723354 - Sel1l protein_coding retained_intron MGP_C57BL6NJ_T0006551.1 MGP_C57BL6NJ_G0005456.1 mouse_genomes_project 12 144812 159826 - Gm26520 lincRNA lincRNA MGP_C57BL6NJ_T0010075.1 MGP_C57BL6NJ_G0008160.1 mouse_genomes_project 12 115383067 115383248 + Gm27379 miRNA miRNA MGP_C57BL6NJ_T0000353.1 MGP_C57BL6NJ_G0000272.1 mouse_genomes_project 12 120602052 120602343 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035066.1 MGP_C57BL6NJ_G0020057.1 mouse_genomes_project 12 30600805 30607865 - MGP_C57BL6NJ_P0035066 Gpr22 protein_coding protein_coding MGP_C57BL6NJ_T0035067.1 MGP_C57BL6NJ_G0020057.1 mouse_genomes_project 12 30602650 30607886 - MGP_C57BL6NJ_P0035067 Gpr22 protein_coding protein_coding MGP_C57BL6NJ_T0035068.1 MGP_C57BL6NJ_G0020057.1 mouse_genomes_project 12 30603387 30607872 - MGP_C57BL6NJ_P0035068 Gpr22 protein_coding protein_coding MGP_C57BL6NJ_T0000092.1 MGP_C57BL6NJ_G0000073.1 mouse_genomes_project 12 120178615 120179078 - MGP_C57BL6NJ_P0000092 Ighv11-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101131.1 MGP_C57BL6NJ_G0039177.1 mouse_genomes_project 12 95433455 95433598 - Gm25776 snoRNA snoRNA MGP_C57BL6NJ_T0099817.1 MGP_C57BL6NJ_G0037863.1 mouse_genomes_project 12 12583473 12583577 + Gm26449 snRNA snRNA MGP_C57BL6NJ_T0000336.1 MGP_C57BL6NJ_G0000255.1 mouse_genomes_project 12 119942844 119943225 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0101150.1 MGP_C57BL6NJ_G0039196.1 mouse_genomes_project 12 115331749 115331818 + AF357428 snoRNA snoRNA MGP_C57BL6NJ_T0010107.1 MGP_C57BL6NJ_G0008192.1 mouse_genomes_project 12 123916066 123916135 + Mir153 miRNA miRNA MGP_C57BL6NJ_T0101127.1 MGP_C57BL6NJ_G0039173.1 mouse_genomes_project 12 85737776 85737913 - Gm22149 snoRNA snoRNA MGP_C57BL6NJ_T0035381.1 MGP_C57BL6NJ_G0020176.1 mouse_genomes_project 12 71024208 71034162 + MGP_C57BL6NJ_P0035381 Lrr1 protein_coding protein_coding MGP_C57BL6NJ_T0009986.1 MGP_C57BL6NJ_G0008071.1 mouse_genomes_project 12 34434486 34434600 + Gm44396 miRNA miRNA MGP_C57BL6NJ_T0101093.1 MGP_C57BL6NJ_G0039139.1 mouse_genomes_project 12 10788024 10788159 - Gm24208 snoRNA snoRNA MGP_C57BL6NJ_T0035972.1 MGP_C57BL6NJ_G0020371.1 mouse_genomes_project 12 90660768 90673263 - MGP_C57BL6NJ_P0035972 Noxred1 protein_coding protein_coding MGP_C57BL6NJ_T0035363.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66655309 66695973 - Mis18bp1 protein_coding retained_intron MGP_C57BL6NJ_T0035364.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66655309 66695949 - MGP_C57BL6NJ_P0035364 Mis18bp1 protein_coding protein_coding MGP_C57BL6NJ_T0035365.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66658898 66661294 - Mis18bp1 protein_coding retained_intron MGP_C57BL6NJ_T0035366.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66675207 66677524 - Mis18bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0035367.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66677147 66695935 - Mis18bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0035368.1 MGP_C57BL6NJ_G0020172.1 mouse_genomes_project 12 66678449 66695947 - Mis18bp1 protein_coding retained_intron MGP_C57BL6NJ_T0000066.1 MGP_C57BL6NJ_G0000053.1 mouse_genomes_project 12 119694896 119697198 - MGP_C57BL6NJ_P0000066 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000069.1 MGP_C57BL6NJ_G0000053.1 mouse_genomes_project 12 119694896 119697328 - MGP_C57BL6NJ_P0000069 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0036504.1 MGP_C57BL6NJ_G0020544.1 mouse_genomes_project 12 118757062 118783514 + MGP_C57BL6NJ_P0036504 Cep170b protein_coding protein_coding MGP_C57BL6NJ_T0036505.1 MGP_C57BL6NJ_G0020544.1 mouse_genomes_project 12 118757082 118783510 + MGP_C57BL6NJ_P0036505 Cep170b protein_coding protein_coding MGP_C57BL6NJ_T0036506.1 MGP_C57BL6NJ_G0020544.1 mouse_genomes_project 12 118757082 118783510 + MGP_C57BL6NJ_P0036506 Cep170b protein_coding protein_coding MGP_C57BL6NJ_T0036334.1 MGP_C57BL6NJ_G0020492.1 mouse_genomes_project 12 114234063 114249722 - MGP_C57BL6NJ_P0036334 Degs2 protein_coding protein_coding MGP_C57BL6NJ_T0036335.1 MGP_C57BL6NJ_G0020492.1 mouse_genomes_project 12 114237493 114249722 - MGP_C57BL6NJ_P0036335 Degs2 protein_coding protein_coding MGP_C57BL6NJ_T0036150.1 MGP_C57BL6NJ_G0020420.1 mouse_genomes_project 12 106996132 107141831 + MGP_C57BL6NJ_P0036150 Slc24a4 protein_coding protein_coding MGP_C57BL6NJ_T0036151.1 MGP_C57BL6NJ_G0020420.1 mouse_genomes_project 12 106996573 107141489 + MGP_C57BL6NJ_P0036151 Slc24a4 protein_coding protein_coding MGP_C57BL6NJ_T0036152.1 MGP_C57BL6NJ_G0020420.1 mouse_genomes_project 12 106996789 107141237 + MGP_C57BL6NJ_P0036152 Slc24a4 protein_coding protein_coding MGP_C57BL6NJ_T0035228.1 MGP_C57BL6NJ_G0020117.1 mouse_genomes_project 12 52396313 52415972 - MGP_C57BL6NJ_P0035228 Dtd2 protein_coding protein_coding MGP_C57BL6NJ_T0035229.1 MGP_C57BL6NJ_G0020117.1 mouse_genomes_project 12 52405507 52415972 - MGP_C57BL6NJ_P0035229 Dtd2 protein_coding protein_coding MGP_C57BL6NJ_T0035929.1 MGP_C57BL6NJ_G0020356.1 mouse_genomes_project 12 89390596 89480068 + MGP_C57BL6NJ_P0035929 Ift43 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035930.1 MGP_C57BL6NJ_G0020356.1 mouse_genomes_project 12 89390600 89480061 + MGP_C57BL6NJ_P0035930 Ift43 protein_coding protein_coding MGP_C57BL6NJ_T0101126.1 MGP_C57BL6NJ_G0039172.1 mouse_genomes_project 12 84359916 84360037 + Gm24853 snoRNA snoRNA MGP_C57BL6NJ_T0034790.1 MGP_C57BL6NJ_G0019954.1 mouse_genomes_project 12 960281 990311 + MGP_C57BL6NJ_P0034790 Dnajc27 protein_coding protein_coding MGP_C57BL6NJ_T0034791.1 MGP_C57BL6NJ_G0019954.1 mouse_genomes_project 12 960336 988903 + MGP_C57BL6NJ_P0034791 Dnajc27 protein_coding protein_coding MGP_C57BL6NJ_T0035182.1 MGP_C57BL6NJ_G0020096.1 mouse_genomes_project 12 40021858 40440724 + MGP_C57BL6NJ_P0035182 Dock4 protein_coding protein_coding MGP_C57BL6NJ_T0036144.1 MGP_C57BL6NJ_G0020418.1 mouse_genomes_project 12 106767341 106809635 - MGP_C57BL6NJ_P0036144 Atxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036145.1 MGP_C57BL6NJ_G0020418.1 mouse_genomes_project 12 106771521 106783912 - MGP_C57BL6NJ_P0036145 Atxn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036146.1 MGP_C57BL6NJ_G0020418.1 mouse_genomes_project 12 106782480 106809632 - MGP_C57BL6NJ_P0036146 Atxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036147.1 MGP_C57BL6NJ_G0020418.1 mouse_genomes_project 12 106782482 106809632 - MGP_C57BL6NJ_P0036147 Atxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036148.1 MGP_C57BL6NJ_G0020418.1 mouse_genomes_project 12 106782505 106809537 - MGP_C57BL6NJ_P0036148 Atxn3 protein_coding protein_coding MGP_C57BL6NJ_T0035894.1 MGP_C57BL6NJ_G0020348.1 mouse_genomes_project 12 88602021 88639579 - MGP_C57BL6NJ_P0035894 Tmed10 protein_coding protein_coding MGP_C57BL6NJ_T0010038.1 MGP_C57BL6NJ_G0008123.1 mouse_genomes_project 12 115240917 115240987 + Mir127 miRNA miRNA MGP_C57BL6NJ_T0036153.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107160936 107272285 + MGP_C57BL6NJ_P0036153 Rin3 protein_coding protein_coding MGP_C57BL6NJ_T0036154.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107161055 107241089 + MGP_C57BL6NJ_P0036154 Rin3 protein_coding protein_coding MGP_C57BL6NJ_T0036155.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107161056 107204884 + MGP_C57BL6NJ_P0036155 Rin3 protein_coding protein_coding MGP_C57BL6NJ_T0036156.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107161797 107272285 + MGP_C57BL6NJ_P0036156 Rin3 protein_coding protein_coding MGP_C57BL6NJ_T0036157.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107232765 107239528 + Rin3 protein_coding processed_transcript MGP_C57BL6NJ_T0036158.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107232765 107246605 + Rin3 protein_coding processed_transcript MGP_C57BL6NJ_T0036159.1 MGP_C57BL6NJ_G0020421.1 mouse_genomes_project 12 107232800 107237253 + Rin3 protein_coding retained_intron MGP_C57BL6NJ_T0009989.1 MGP_C57BL6NJ_G0008074.1 mouse_genomes_project 12 39800458 39800558 - Mir1938 miRNA miRNA MGP_C57BL6NJ_T0035183.1 MGP_C57BL6NJ_G0020097.1 mouse_genomes_project 12 40634888 41610962 + MGP_C57BL6NJ_P0035183 Immp2l protein_coding protein_coding MGP_C57BL6NJ_T0035184.1 MGP_C57BL6NJ_G0020097.1 mouse_genomes_project 12 40634924 40683272 + Immp2l protein_coding retained_intron MGP_C57BL6NJ_T0035185.1 MGP_C57BL6NJ_G0020097.1 mouse_genomes_project 12 40634925 40727710 + Immp2l protein_coding retained_intron MGP_C57BL6NJ_T0035186.1 MGP_C57BL6NJ_G0020097.1 mouse_genomes_project 12 40635127 41610616 + MGP_C57BL6NJ_P0035186 Immp2l protein_coding protein_coding MGP_C57BL6NJ_T0035187.1 MGP_C57BL6NJ_G0020097.1 mouse_genomes_project 12 40682698 40727696 + MGP_C57BL6NJ_P0035187 Immp2l protein_coding protein_coding MGP_C57BL6NJ_T0034965.1 MGP_C57BL6NJ_G0020018.1 mouse_genomes_project 12 19652987 19687964 - MGP_C57BL6NJ_P0034965 Ywhaq protein_coding protein_coding MGP_C57BL6NJ_T0034966.1 MGP_C57BL6NJ_G0020018.1 mouse_genomes_project 12 19658628 19687658 - Ywhaq protein_coding processed_transcript MGP_C57BL6NJ_T0034967.1 MGP_C57BL6NJ_G0020018.1 mouse_genomes_project 12 19659331 19661803 - Ywhaq protein_coding retained_intron MGP_C57BL6NJ_T0035167.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39778525 39800936 - MGP_C57BL6NJ_P0035167 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035168.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39780089 39784214 - MGP_C57BL6NJ_P0035168 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035169.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39780278 39781601 - Ifrd1 protein_coding retained_intron MGP_C57BL6NJ_T0035170.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39780877 39800709 - MGP_C57BL6NJ_P0035170 Ifrd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035171.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39791131 39825632 - MGP_C57BL6NJ_P0035171 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035172.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39791188 39794665 - MGP_C57BL6NJ_P0035172 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035173.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39791245 39826039 - MGP_C57BL6NJ_P0035173 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035174.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39792513 39800932 - Ifrd1 protein_coding retained_intron MGP_C57BL6NJ_T0035175.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39793340 39826057 - MGP_C57BL6NJ_P0035175 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0035176.1 MGP_C57BL6NJ_G0020093.1 mouse_genomes_project 12 39794309 39800896 - MGP_C57BL6NJ_P0035176 Ifrd1 protein_coding protein_coding MGP_C57BL6NJ_T0010106.1 MGP_C57BL6NJ_G0008191.1 mouse_genomes_project 12 122863711 122863775 - Gm23190 miRNA miRNA MGP_C57BL6NJ_T0010095.1 MGP_C57BL6NJ_G0008180.1 mouse_genomes_project 12 118092822 118092882 - Mir3073b miRNA miRNA MGP_C57BL6NJ_T0006668.1 MGP_C57BL6NJ_G0005537.1 mouse_genomes_project 12 117506740 117508822 - 2810029C07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006600.1 MGP_C57BL6NJ_G0005493.1 mouse_genomes_project 12 83713022 83714040 - 1700052I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0035508.1 MGP_C57BL6NJ_G0020222.1 mouse_genomes_project 12 75188803 75191602 - Six1 protein_coding processed_transcript MGP_C57BL6NJ_T0035509.1 MGP_C57BL6NJ_G0020222.1 mouse_genomes_project 12 75190613 75195966 - MGP_C57BL6NJ_P0035509 Six1 protein_coding protein_coding MGP_C57BL6NJ_T0035510.1 MGP_C57BL6NJ_G0020222.1 mouse_genomes_project 12 75192317 75204411 - Six1 protein_coding processed_transcript MGP_C57BL6NJ_T0035511.1 MGP_C57BL6NJ_G0020222.1 mouse_genomes_project 12 75192560 75194078 - Six1 protein_coding processed_transcript MGP_C57BL6NJ_T0036226.1 MGP_C57BL6NJ_G0020446.1 mouse_genomes_project 12 108612980 108623563 - MGP_C57BL6NJ_P0036226 Serpina6 protein_coding protein_coding MGP_C57BL6NJ_T0036227.1 MGP_C57BL6NJ_G0020446.1 mouse_genomes_project 12 108620724 108623453 - MGP_C57BL6NJ_P0036227 Serpina6 protein_coding protein_coding MGP_C57BL6NJ_T0035164.1 MGP_C57BL6NJ_G0020091.1 mouse_genomes_project 12 39617128 39697061 - MGP_C57BL6NJ_P0035164 Scin protein_coding protein_coding MGP_C57BL6NJ_T0035165.1 MGP_C57BL6NJ_G0020091.1 mouse_genomes_project 12 39617132 39697106 - MGP_C57BL6NJ_P0035165 Scin protein_coding protein_coding MGP_C57BL6NJ_T0000385.1 MGP_C57BL6NJ_G0000304.1 mouse_genomes_project 12 121984565 121984995 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0013140.1 MGP_C57BL6NJ_G0011185.1 mouse_genomes_project 12 95766219 95766597 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003549.1 MGP_C57BL6NJ_G0003246.1 mouse_genomes_project 12 58457152 58483358 - 4921518K17Rik antisense antisense MGP_C57BL6NJ_T0098815.1 MGP_C57BL6NJ_G0036879.1 mouse_genomes_project 12 87202077 87202688 - pseudogene pseudogene MGP_C57BL6NJ_T0006586.1 MGP_C57BL6NJ_G0005483.1 mouse_genomes_project 12 72198480 72207244 + F730035M05Rik lincRNA lincRNA MGP_C57BL6NJ_T0036255.1 MGP_C57BL6NJ_G0020461.1 mouse_genomes_project 12 109439001 109496794 + MGP_C57BL6NJ_P0036255 Serpina3m protein_coding protein_coding MGP_C57BL6NJ_T0036256.1 MGP_C57BL6NJ_G0020461.1 mouse_genomes_project 12 109489701 109496795 + MGP_C57BL6NJ_P0036256 Serpina3m protein_coding protein_coding MGP_C57BL6NJ_T0035001.1 MGP_C57BL6NJ_G0020032.1 mouse_genomes_project 12 27221660 27251083 - MGP_C57BL6NJ_P0035001 Allc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0035002.1 MGP_C57BL6NJ_G0020032.1 mouse_genomes_project 12 27221666 27261675 - MGP_C57BL6NJ_P0035002 Allc protein_coding protein_coding MGP_C57BL6NJ_T0035003.1 MGP_C57BL6NJ_G0020032.1 mouse_genomes_project 12 27221666 27261683 - MGP_C57BL6NJ_P0035003 Allc protein_coding protein_coding MGP_C57BL6NJ_T0006616.1 MGP_C57BL6NJ_G0005509.1 mouse_genomes_project 12 105747919 105756424 + D130020L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0003564.1 MGP_C57BL6NJ_G0003259.1 mouse_genomes_project 12 88127754 88128845 + Gm17139 antisense antisense MGP_C57BL6NJ_T0035468.1 MGP_C57BL6NJ_G0020209.1 mouse_genomes_project 12 73905051 74068523 + MGP_C57BL6NJ_P0035468 Daam1 protein_coding protein_coding MGP_C57BL6NJ_T0000361.1 MGP_C57BL6NJ_G0000280.1 mouse_genomes_project 12 120935960 120936392 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0034890.1 MGP_C57BL6NJ_G0019994.1 mouse_genomes_project 12 10513021 10513405 + MGP_C57BL6NJ_P0034890 Rpl36-ps3 protein_coding protein_coding MGP_C57BL6NJ_T0036530.1 MGP_C57BL6NJ_G0020558.1 mouse_genomes_project 12 119182002 119186937 + MGP_C57BL6NJ_P0036530 Crip2 protein_coding protein_coding MGP_C57BL6NJ_T0036531.1 MGP_C57BL6NJ_G0020558.1 mouse_genomes_project 12 119182002 119186534 + MGP_C57BL6NJ_P0036531 Crip2 protein_coding protein_coding MGP_C57BL6NJ_T0036532.1 MGP_C57BL6NJ_G0020558.1 mouse_genomes_project 12 119184765 119186400 + Crip2 protein_coding retained_intron MGP_C57BL6NJ_T0036533.1 MGP_C57BL6NJ_G0020558.1 mouse_genomes_project 12 119184900 119185662 + Crip2 protein_coding retained_intron MGP_C57BL6NJ_T0036534.1 MGP_C57BL6NJ_G0020558.1 mouse_genomes_project 12 119185516 119186135 + Crip2 protein_coding retained_intron MGP_C57BL6NJ_T0000986.1 MGP_C57BL6NJ_G0000896.1 mouse_genomes_project 12 24008026 24049018 - TEC TEC MGP_C57BL6NJ_T0035775.1 MGP_C57BL6NJ_G0020309.1 mouse_genomes_project 12 87036106 87036772 - MGP_C57BL6NJ_P0035775 Gm26571 protein_coding protein_coding MGP_C57BL6NJ_T0000180.1 MGP_C57BL6NJ_G0000134.1 mouse_genomes_project 12 122382046 122382340 - MGP_C57BL6NJ_P0000180 Ighv1-76 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000182.1 MGP_C57BL6NJ_G0000134.1 mouse_genomes_project 12 122382046 122382497 - MGP_C57BL6NJ_P0000182 Ighv1-76 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034867.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6248381 6309450 + MGP_C57BL6NJ_P0034867 Wdr35 protein_coding protein_coding MGP_C57BL6NJ_T0034868.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6248500 6267665 + Wdr35 protein_coding retained_intron MGP_C57BL6NJ_T0034869.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6248500 6267670 + MGP_C57BL6NJ_P0034869 Wdr35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0034870.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6248536 6309449 + MGP_C57BL6NJ_P0034870 Wdr35 protein_coding protein_coding MGP_C57BL6NJ_T0034871.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6248548 6303592 + Wdr35 protein_coding retained_intron MGP_C57BL6NJ_T0034872.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6249358 6261717 + Wdr35 protein_coding retained_intron MGP_C57BL6NJ_T0034873.1 MGP_C57BL6NJ_G0019982.1 mouse_genomes_project 12 6303198 6305069 + Wdr35 protein_coding retained_intron MGP_C57BL6NJ_T0035049.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30242717 30308137 + MGP_C57BL6NJ_P0035049 Slc26a3 protein_coding protein_coding MGP_C57BL6NJ_T0035050.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30295379 30332227 + MGP_C57BL6NJ_P0035050 Slc26a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035051.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30295381 30332649 + MGP_C57BL6NJ_P0035051 Slc26a3 protein_coding protein_coding MGP_C57BL6NJ_T0035052.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30295381 30310029 + MGP_C57BL6NJ_P0035052 Slc26a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035053.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30295395 30311388 + Slc26a3 protein_coding retained_intron MGP_C57BL6NJ_T0035054.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30304596 30313591 + Slc26a3 protein_coding retained_intron MGP_C57BL6NJ_T0035055.1 MGP_C57BL6NJ_G0020051.1 mouse_genomes_project 12 30329603 30330555 + MGP_C57BL6NJ_P0035055 Slc26a3 protein_coding protein_coding MGP_C57BL6NJ_T0036514.1 MGP_C57BL6NJ_G0020549.1 mouse_genomes_project 12 118889030 118899188 - MGP_C57BL6NJ_P0036514 Gpr132 protein_coding protein_coding MGP_C57BL6NJ_T0035086.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31925151 31950358 + MGP_C57BL6NJ_P0035086 Sypl protein_coding protein_coding MGP_C57BL6NJ_T0035087.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31925444 31948212 + MGP_C57BL6NJ_P0035087 Sypl protein_coding protein_coding MGP_C57BL6NJ_T0035088.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31925507 31945460 + MGP_C57BL6NJ_P0035088 Sypl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035089.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31925819 31938987 + Sypl protein_coding processed_transcript MGP_C57BL6NJ_T0035090.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31936586 31941650 + Sypl protein_coding retained_intron MGP_C57BL6NJ_T0035091.1 MGP_C57BL6NJ_G0020063.1 mouse_genomes_project 12 31936666 31940754 + Sypl protein_coding processed_transcript MGP_C57BL6NJ_T0101091.1 MGP_C57BL6NJ_G0039137.1 mouse_genomes_project 12 6971644 6971772 - Gm23979 snoRNA snoRNA MGP_C57BL6NJ_T0098983.1 MGP_C57BL6NJ_G0037047.1 mouse_genomes_project 12 56787934 56788054 - Gm23799 rRNA rRNA MGP_C57BL6NJ_T0013114.1 MGP_C57BL6NJ_G0011159.1 mouse_genomes_project 12 58382982 58384564 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035637.1 MGP_C57BL6NJ_G0020273.1 mouse_genomes_project 12 81941177 82176894 + MGP_C57BL6NJ_P0035637 Rad51b protein_coding protein_coding MGP_C57BL6NJ_T0035638.1 MGP_C57BL6NJ_G0020273.1 mouse_genomes_project 12 81941177 81972253 + MGP_C57BL6NJ_P0035638 Rad51b protein_coding protein_coding MGP_C57BL6NJ_T0003571.1 MGP_C57BL6NJ_G0003265.1 mouse_genomes_project 12 107496605 107502442 + Gm20069 antisense antisense MGP_C57BL6NJ_T0035785.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87240570 87266032 + Dnal1 protein_coding processed_transcript MGP_C57BL6NJ_T0035786.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87240570 87269450 + MGP_C57BL6NJ_P0035786 Dnal1 protein_coding protein_coding MGP_C57BL6NJ_T0035787.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87240575 87264651 + MGP_C57BL6NJ_P0035787 Dnal1 protein_coding protein_coding MGP_C57BL6NJ_T0035788.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87240594 87266787 + MGP_C57BL6NJ_P0035788 Dnal1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035789.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87240595 87260183 + MGP_C57BL6NJ_P0035789 Dnal1 protein_coding protein_coding MGP_C57BL6NJ_T0035790.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87253108 87273431 + Dnal1 protein_coding retained_intron MGP_C57BL6NJ_T0035791.1 MGP_C57BL6NJ_G0020316.1 mouse_genomes_project 12 87261864 87263304 + MGP_C57BL6NJ_P0035791 Dnal1 protein_coding protein_coding MGP_C57BL6NJ_T0003560.1 MGP_C57BL6NJ_G0003255.1 mouse_genomes_project 12 84447986 84449828 + Gm16572 antisense antisense MGP_C57BL6NJ_T0006580.1 MGP_C57BL6NJ_G0005479.1 mouse_genomes_project 12 52286076 52287521 + Gm26517 lincRNA lincRNA MGP_C57BL6NJ_T0006568.1 MGP_C57BL6NJ_G0005469.1 mouse_genomes_project 12 27128556 27132912 - 1700022F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0036171.1 MGP_C57BL6NJ_G0020428.1 mouse_genomes_project 12 107636224 107637656 - MGP_C57BL6NJ_P0036171 Moap1 protein_coding protein_coding MGP_C57BL6NJ_T0036172.1 MGP_C57BL6NJ_G0020428.1 mouse_genomes_project 12 107636224 107637640 - MGP_C57BL6NJ_P0036172 Moap1 protein_coding protein_coding MGP_C57BL6NJ_T0000029.1 MGP_C57BL6NJ_G0000021.1 mouse_genomes_project 12 119511188 119511205 - MGP_C57BL6NJ_P0000029 Ighd2-4 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0009981.1 MGP_C57BL6NJ_G0008066.1 mouse_genomes_project 12 24919173 24919283 - Mir6538 miRNA miRNA MGP_C57BL6NJ_T0035928.1 MGP_C57BL6NJ_G0020355.1 mouse_genomes_project 12 89365218 89387081 - MGP_C57BL6NJ_P0035928 Tgfb3 protein_coding protein_coding MGP_C57BL6NJ_T0035447.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73005514 73026753 + Psma3 protein_coding retained_intron MGP_C57BL6NJ_T0035448.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73005514 73027173 + MGP_C57BL6NJ_P0035448 Psma3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035449.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73006421 73026756 + MGP_C57BL6NJ_P0035449 Psma3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035450.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73006440 73011647 + Psma3 protein_coding retained_intron MGP_C57BL6NJ_T0035451.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73006447 73026727 + MGP_C57BL6NJ_P0035451 Psma3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035452.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73006451 73016790 + Psma3 protein_coding retained_intron MGP_C57BL6NJ_T0035453.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73006479 73028115 + MGP_C57BL6NJ_P0035453 Psma3 protein_coding protein_coding MGP_C57BL6NJ_T0035454.1 MGP_C57BL6NJ_G0020203.1 mouse_genomes_project 12 73018844 73026757 + MGP_C57BL6NJ_P0035454 Psma3 protein_coding protein_coding MGP_C57BL6NJ_T0006555.1 MGP_C57BL6NJ_G0005459.1 mouse_genomes_project 12 4491983 4500257 - 1700101O22Rik lincRNA lincRNA MGP_C57BL6NJ_T0035444.1 MGP_C57BL6NJ_G0020201.1 mouse_genomes_project 12 72851323 72932906 + MGP_C57BL6NJ_P0035444 Frmd6 protein_coding protein_coding MGP_C57BL6NJ_T0035445.1 MGP_C57BL6NJ_G0020201.1 mouse_genomes_project 12 72892672 72929759 + MGP_C57BL6NJ_P0035445 Frmd6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0000177.1 MGP_C57BL6NJ_G0000132.1 mouse_genomes_project 12 122332129 122332539 - MGP_C57BL6NJ_P0000177 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000178.1 MGP_C57BL6NJ_G0000132.1 mouse_genomes_project 12 122332129 122332539 - MGP_C57BL6NJ_P0000178 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0034887.1 MGP_C57BL6NJ_G0019992.1 mouse_genomes_project 12 8953008 8960700 + MGP_C57BL6NJ_P0034887 Rad51ap2 protein_coding protein_coding MGP_C57BL6NJ_T0036515.1 MGP_C57BL6NJ_G0020550.1 mouse_genomes_project 12 118944030 118964936 - MGP_C57BL6NJ_P0036515 Jag2 protein_coding protein_coding MGP_C57BL6NJ_T0000360.1 MGP_C57BL6NJ_G0000279.1 mouse_genomes_project 12 120908236 120908674 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0013109.1 MGP_C57BL6NJ_G0011154.1 mouse_genomes_project 12 52126971 52127282 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035466.1 MGP_C57BL6NJ_G0020208.1 mouse_genomes_project 12 73346919 73358735 + MGP_C57BL6NJ_P0035466 Dact1 protein_coding protein_coding MGP_C57BL6NJ_T0035467.1 MGP_C57BL6NJ_G0020208.1 mouse_genomes_project 12 73347019 73357522 + MGP_C57BL6NJ_P0035467 Dact1 protein_coding protein_coding MGP_C57BL6NJ_T0035259.1 MGP_C57BL6NJ_G0020132.1 mouse_genomes_project 12 55762712 55771900 + MGP_C57BL6NJ_P0035259 protein_coding protein_coding MGP_C57BL6NJ_T0101117.1 MGP_C57BL6NJ_G0039163.1 mouse_genomes_project 12 66224717 66224848 + Gm24066 snoRNA snoRNA MGP_C57BL6NJ_T0036193.1 MGP_C57BL6NJ_G0020436.1 mouse_genomes_project 12 108244836 108250928 + MGP_C57BL6NJ_P0036193 Fam181a protein_coding protein_coding MGP_C57BL6NJ_T0036194.1 MGP_C57BL6NJ_G0020436.1 mouse_genomes_project 12 108248814 108250180 + MGP_C57BL6NJ_P0036194 Fam181a protein_coding protein_coding MGP_C57BL6NJ_T0036195.1 MGP_C57BL6NJ_G0020436.1 mouse_genomes_project 12 108248820 108250928 + MGP_C57BL6NJ_P0036195 Fam181a protein_coding protein_coding MGP_C57BL6NJ_T0098992.1 MGP_C57BL6NJ_G0037056.1 mouse_genomes_project 12 124274078 124274184 + Gm24741 rRNA rRNA MGP_C57BL6NJ_T0101096.1 MGP_C57BL6NJ_G0039142.1 mouse_genomes_project 12 23167797 23167926 + Gm26211 snoRNA snoRNA MGP_C57BL6NJ_T0036008.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92394000 92532687 + MGP_C57BL6NJ_P0036008 Nrxn3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036009.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92394022 92982217 + Nrxn3 protein_coding retained_intron MGP_C57BL6NJ_T0036010.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92394034 92528528 + Nrxn3 protein_coding retained_intron MGP_C57BL6NJ_T0036011.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92394132 94128441 + MGP_C57BL6NJ_P0036011 Nrxn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036012.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92394255 94128460 + MGP_C57BL6NJ_P0036012 Nrxn3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036013.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92396137 92470432 + Nrxn3 protein_coding processed_transcript MGP_C57BL6NJ_T0036014.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92396809 92470298 + Nrxn3 protein_coding processed_transcript MGP_C57BL6NJ_T0036015.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92469820 94130498 + MGP_C57BL6NJ_P0036015 Nrxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036016.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92470755 92532810 + Nrxn3 protein_coding processed_transcript MGP_C57BL6NJ_T0036017.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92652700 92901934 + Nrxn3 protein_coding processed_transcript MGP_C57BL6NJ_T0036018.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92652709 94128623 + MGP_C57BL6NJ_P0036018 Nrxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036019.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 92907720 94127973 + MGP_C57BL6NJ_P0036019 Nrxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036020.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 93574094 94128462 + MGP_C57BL6NJ_P0036020 Nrxn3 protein_coding protein_coding MGP_C57BL6NJ_T0036021.1 MGP_C57BL6NJ_G0020385.1 mouse_genomes_project 12 93574094 94129006 + MGP_C57BL6NJ_P0036021 Nrxn3 protein_coding protein_coding MGP_C57BL6NJ_T0035136.1 MGP_C57BL6NJ_G0020084.1 mouse_genomes_project 12 35581450 35582390 - MGP_C57BL6NJ_P0035136 D630036H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0035277.1 MGP_C57BL6NJ_G0020140.1 mouse_genomes_project 12 56166434 56169679 - MGP_C57BL6NJ_P0035277 Nfkbia protein_coding protein_coding MGP_C57BL6NJ_T0036261.1 MGP_C57BL6NJ_G0020466.1 mouse_genomes_project 12 109885480 109987536 - MGP_C57BL6NJ_P0036261 Clmn protein_coding protein_coding MGP_C57BL6NJ_T0036262.1 MGP_C57BL6NJ_G0020466.1 mouse_genomes_project 12 109885480 109987536 - MGP_C57BL6NJ_P0036262 Clmn protein_coding protein_coding MGP_C57BL6NJ_T0099809.1 MGP_C57BL6NJ_G0037855.1 mouse_genomes_project 12 1689357 1689462 + Gm23676 snRNA snRNA MGP_C57BL6NJ_T0036521.1 MGP_C57BL6NJ_G0020555.1 mouse_genomes_project 12 119049592 119116034 + MGP_C57BL6NJ_P0036521 Pacs2 protein_coding protein_coding MGP_C57BL6NJ_T0036557.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122687024 122747471 + Vipr2 protein_coding retained_intron MGP_C57BL6NJ_T0036558.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122687026 122753740 + MGP_C57BL6NJ_P0036558 Vipr2 protein_coding protein_coding MGP_C57BL6NJ_T0036559.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122687058 122707671 + Vipr2 protein_coding processed_transcript MGP_C57BL6NJ_T0036560.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122687064 122704045 + Vipr2 protein_coding processed_transcript MGP_C57BL6NJ_T0036561.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122687071 122740826 + Vipr2 protein_coding processed_transcript MGP_C57BL6NJ_T0036562.1 MGP_C57BL6NJ_G0020565.1 mouse_genomes_project 12 122744845 122751240 + MGP_C57BL6NJ_P0036562 Vipr2 protein_coding protein_coding MGP_C57BL6NJ_T0006564.1 MGP_C57BL6NJ_G0005468.1 mouse_genomes_project 12 25719125 25738767 - Gm9866 lincRNA lincRNA MGP_C57BL6NJ_T0006565.1 MGP_C57BL6NJ_G0005468.1 mouse_genomes_project 12 25719131 25739089 - Gm9866 lincRNA lincRNA MGP_C57BL6NJ_T0006566.1 MGP_C57BL6NJ_G0005468.1 mouse_genomes_project 12 25720305 25738902 - Gm9866 lincRNA lincRNA MGP_C57BL6NJ_T0006567.1 MGP_C57BL6NJ_G0005468.1 mouse_genomes_project 12 25723800 25738918 - Gm9866 lincRNA lincRNA MGP_C57BL6NJ_T0036431.1 MGP_C57BL6NJ_G0020521.1 mouse_genomes_project 12 117460450 117472919 + MGP_C57BL6NJ_P0036431 Eif5 protein_coding protein_coding MGP_C57BL6NJ_T0036432.1 MGP_C57BL6NJ_G0020521.1 mouse_genomes_project 12 117461204 117469869 + MGP_C57BL6NJ_P0036432 Eif5 protein_coding protein_coding MGP_C57BL6NJ_T0013170.1 MGP_C57BL6NJ_G0011215.1 mouse_genomes_project 12 122157769 122158393 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035195.1 MGP_C57BL6NJ_G0020101.1 mouse_genomes_project 12 44158949 44447155 + MGP_C57BL6NJ_P0035195 Nrcam protein_coding protein_coding MGP_C57BL6NJ_T0035196.1 MGP_C57BL6NJ_G0020101.1 mouse_genomes_project 12 44158949 44447155 + MGP_C57BL6NJ_P0035196 Nrcam protein_coding protein_coding MGP_C57BL6NJ_T0102786.1 MGP_C57BL6NJ_G0040580.1 mouse_genomes_project 12 119422579 119423785 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003540.1 MGP_C57BL6NJ_G0003239.1 mouse_genomes_project 12 39596931 39598860 + Arl4aos antisense antisense MGP_C57BL6NJ_T0034792.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1016410 1110830 + Adcy3 protein_coding retained_intron MGP_C57BL6NJ_T0034793.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1016411 1110830 + MGP_C57BL6NJ_P0034793 Adcy3 protein_coding protein_coding MGP_C57BL6NJ_T0034794.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1016704 1110830 + MGP_C57BL6NJ_P0034794 Adcy3 protein_coding protein_coding MGP_C57BL6NJ_T0034795.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1016709 1110829 + MGP_C57BL6NJ_P0034795 Adcy3 protein_coding protein_coding MGP_C57BL6NJ_T0034796.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1017460 1110829 + MGP_C57BL6NJ_P0034796 Adcy3 protein_coding protein_coding MGP_C57BL6NJ_T0034797.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1052888 1080200 + Adcy3 protein_coding processed_transcript MGP_C57BL6NJ_T0034798.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1092305 1094312 + Adcy3 protein_coding retained_intron MGP_C57BL6NJ_T0034801.1 MGP_C57BL6NJ_G0019955.1 mouse_genomes_project 12 1100663 1103705 + Adcy3 protein_coding retained_intron MGP_C57BL6NJ_T0000024.1 MGP_C57BL6NJ_G0000016.1 mouse_genomes_project 12 119365928 119368094 + IG_C_pseudogene IG_C_pseudogene MGP_C57BL6NJ_T0036501.1 MGP_C57BL6NJ_G0020543.1 mouse_genomes_project 12 118706065 118711910 + MGP_C57BL6NJ_P0036501 Zbtb42 protein_coding protein_coding MGP_C57BL6NJ_T0036502.1 MGP_C57BL6NJ_G0020543.1 mouse_genomes_project 12 118706077 118711910 + MGP_C57BL6NJ_P0036502 Zbtb42 protein_coding protein_coding MGP_C57BL6NJ_T0036503.1 MGP_C57BL6NJ_G0020543.1 mouse_genomes_project 12 118706115 118709133 + MGP_C57BL6NJ_P0036503 Zbtb42 protein_coding protein_coding MGP_C57BL6NJ_T0000043.1 MGP_C57BL6NJ_G0000035.1 mouse_genomes_project 12 119480914 119480962 - MGP_C57BL6NJ_P0000043 Ighj3 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0000162.1 MGP_C57BL6NJ_G0000121.1 mouse_genomes_project 12 121758496 121759031 - MGP_C57BL6NJ_P0000162 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000164.1 MGP_C57BL6NJ_G0000121.1 mouse_genomes_project 12 121758496 121759031 - MGP_C57BL6NJ_P0000164 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0009998.1 MGP_C57BL6NJ_G0008083.1 mouse_genomes_project 12 71233136 71233206 - miRNA miRNA MGP_C57BL6NJ_T0034838.1 MGP_C57BL6NJ_G0019974.1 mouse_genomes_project 12 5471251 5475272 - MGP_C57BL6NJ_P0034838 Gdf7 protein_coding protein_coding MGP_C57BL6NJ_T0035130.1 MGP_C57BL6NJ_G0020080.1 mouse_genomes_project 12 35274944 35342854 - MGP_C57BL6NJ_P0035130 Bzw2 protein_coding protein_coding MGP_C57BL6NJ_T0006563.1 MGP_C57BL6NJ_G0005467.1 mouse_genomes_project 12 19688438 19690126 + lincRNA lincRNA MGP_C57BL6NJ_T0035865.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88216345 88297128 + MGP_C57BL6NJ_P0035865 Ylpm1 protein_coding protein_coding MGP_C57BL6NJ_T0035866.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88216376 88297151 + MGP_C57BL6NJ_P0035866 Ylpm1 protein_coding protein_coding MGP_C57BL6NJ_T0035867.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88216479 88297150 + MGP_C57BL6NJ_P0035867 Ylpm1 protein_coding protein_coding MGP_C57BL6NJ_T0035868.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88240070 88297128 + MGP_C57BL6NJ_P0035868 Ylpm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0035869.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88268862 88285972 + Ylpm1 protein_coding retained_intron MGP_C57BL6NJ_T0035870.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88276325 88277257 + Ylpm1 protein_coding retained_intron MGP_C57BL6NJ_T0035871.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88286595 88296885 + Ylpm1 protein_coding retained_intron MGP_C57BL6NJ_T0035872.1 MGP_C57BL6NJ_G0020338.1 mouse_genomes_project 12 88291314 88297051 + Ylpm1 protein_coding retained_intron MGP_C57BL6NJ_T0036468.1 MGP_C57BL6NJ_G0020531.1 mouse_genomes_project 12 117948990 117954592 - MGP_C57BL6NJ_P0036468 2010107E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0006610.1 MGP_C57BL6NJ_G0005503.1 mouse_genomes_project 12 94590754 94810444 - 4930544I03Rik lincRNA lincRNA MGP_C57BL6NJ_T0035524.1 MGP_C57BL6NJ_G0020227.1 mouse_genomes_project 12 75543070 75551760 - MGP_C57BL6NJ_P0035524 D830013O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0000393.1 MGP_C57BL6NJ_G0000312.1 mouse_genomes_project 12 122559671 122560141 - IG_V_pseudogene IG_V_pseudogene MGP_C57BL6NJ_T0035617.1 MGP_C57BL6NJ_G0020262.1 mouse_genomes_project 12 81451309 81473676 - MGP_C57BL6NJ_P0035617 Atp6v1d protein_coding protein_coding MGP_C57BL6NJ_T0035362.1 MGP_C57BL6NJ_G0020171.1 mouse_genomes_project 12 66596706 66654634 + MGP_C57BL6NJ_P0035362 Fancm protein_coding protein_coding MGP_C57BL6NJ_T0011602.1 MGP_C57BL6NJ_G0009687.1 mouse_genomes_project 12 125525645 125525844 + Gm22537 misc_RNA misc_RNA MGP_C57BL6NJ_T0101147.1 MGP_C57BL6NJ_G0039193.1 mouse_genomes_project 12 115307670 115307742 + Gm25357 snoRNA snoRNA MGP_C57BL6NJ_T0011601.1 MGP_C57BL6NJ_G0009686.1 mouse_genomes_project 12 115252033 115252131 + Gm27350 misc_RNA misc_RNA MGP_C57BL6NJ_T0009979.1 MGP_C57BL6NJ_G0008064.1 mouse_genomes_project 12 14632079 14632176 - Gm44305 miRNA miRNA MGP_C57BL6NJ_T0006576.1 MGP_C57BL6NJ_G0005476.1 mouse_genomes_project 12 36360729 36370114 - Gm29007 lincRNA lincRNA MGP_C57BL6NJ_T0099834.1 MGP_C57BL6NJ_G0037880.1 mouse_genomes_project 12 59940672 59940863 + Gm22973 snRNA snRNA MGP_C57BL6NJ_T0010078.1 MGP_C57BL6NJ_G0008163.1 mouse_genomes_project 12 115388443 115388514 + Mir134 miRNA miRNA MGP_C57BL6NJ_T0000987.1 MGP_C57BL6NJ_G0000897.1 mouse_genomes_project 12 47171335 47171801 + TEC TEC MGP_C57BL6NJ_T0000011.1 MGP_C57BL6NJ_G0000007.1 mouse_genomes_project 12 119381024 119386308 - MGP_C57BL6NJ_P0000011 Ighg1 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000012.1 MGP_C57BL6NJ_G0000007.1 mouse_genomes_project 12 119384658 119386308 - MGP_C57BL6NJ_P0000012 Ighg1 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0101119.1 MGP_C57BL6NJ_G0039165.1 mouse_genomes_project 12 66938628 66938753 - Gm26015 snoRNA snoRNA MGP_C57BL6NJ_T0006595.1 MGP_C57BL6NJ_G0005488.1 mouse_genomes_project 12 82808768 82813750 + Gm26669 lincRNA lincRNA MGP_C57BL6NJ_T0036022.1 MGP_C57BL6NJ_G0020386.1 mouse_genomes_project 12 94556954 94570839 - MGP_C57BL6NJ_P0036022 Dio2 protein_coding protein_coding MGP_C57BL6NJ_T0034881.1 MGP_C57BL6NJ_G0019987.1 mouse_genomes_project 12 8557026 8629210 - MGP_C57BL6NJ_P0034881 Kcns3 protein_coding protein_coding MGP_C57BL6NJ_T0034882.1 MGP_C57BL6NJ_G0019987.1 mouse_genomes_project 12 8557026 8628741 - MGP_C57BL6NJ_P0034882 Kcns3 protein_coding protein_coding MGP_C57BL6NJ_T0034944.1 MGP_C57BL6NJ_G0020012.1 mouse_genomes_project 12 19346108 19346444 + MGP_C57BL6NJ_P0034944 Gm9312 protein_coding protein_coding MGP_C57BL6NJ_T0098981.1 MGP_C57BL6NJ_G0037045.1 mouse_genomes_project 12 53503124 53503243 - n-R5s58 rRNA rRNA MGP_C57BL6NJ_T0006598.1 MGP_C57BL6NJ_G0005491.1 mouse_genomes_project 12 83517049 83519911 + Gm26796 lincRNA lincRNA MGP_C57BL6NJ_T0000070.1 MGP_C57BL6NJ_G0000056.1 mouse_genomes_project 12 119715370 119715902 - MGP_C57BL6NJ_P0000070 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000990.1 MGP_C57BL6NJ_G0000900.1 mouse_genomes_project 12 61940097 61951879 + TEC TEC MGP_C57BL6NJ_T0099811.1 MGP_C57BL6NJ_G0037857.1 mouse_genomes_project 12 1971955 1972058 - Gm23167 snRNA snRNA MGP_C57BL6NJ_T0036582.1 MGP_C57BL6NJ_G0020575.1 mouse_genomes_project 12 125651791 125769854 - MGP_C57BL6NJ_P0036582 Abcb5 protein_coding protein_coding MGP_C57BL6NJ_T0036583.1 MGP_C57BL6NJ_G0020575.1 mouse_genomes_project 12 125670999 125675614 - Abcb5 protein_coding retained_intron MGP_C57BL6NJ_T0036584.1 MGP_C57BL6NJ_G0020575.1 mouse_genomes_project 12 125671472 125712981 - Abcb5 protein_coding processed_transcript MGP_C57BL6NJ_T0017802.1 MGP_C57BL6NJ_G0015637.1 mouse_genomes_project 12 123807818 123814499 - Gm10421 processed_transcript antisense MGP_C57BL6NJ_T0017803.1 MGP_C57BL6NJ_G0015637.1 mouse_genomes_project 12 123808660 123814553 - Gm10421 processed_transcript retained_intron MGP_C57BL6NJ_T0017804.1 MGP_C57BL6NJ_G0015637.1 mouse_genomes_project 12 123814373 123814935 - Gm10421 processed_transcript antisense MGP_C57BL6NJ_T0010099.1 MGP_C57BL6NJ_G0008184.1 mouse_genomes_project 12 118955923 118955982 - Mir6941 miRNA miRNA MGP_C57BL6NJ_T0013136.1 MGP_C57BL6NJ_G0011181.1 mouse_genomes_project 12 90492343 90492458 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0000097.1 MGP_C57BL6NJ_G0000078.1 mouse_genomes_project 12 120300666 120300965 - MGP_C57BL6NJ_P0000097 Ighv16-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000098.1 MGP_C57BL6NJ_G0000078.1 mouse_genomes_project 12 120300666 120301120 - MGP_C57BL6NJ_P0000098 Ighv16-1 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035843.1 MGP_C57BL6NJ_G0020331.1 mouse_genomes_project 12 87875407 87903650 - MGP_C57BL6NJ_P0035843 Syndig1l protein_coding protein_coding MGP_C57BL6NJ_T0006651.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115384068 115405102 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006652.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115384069 115385146 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006653.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115384580 115405102 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006654.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115385263 115405104 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006655.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115389285 115405102 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006656.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115389285 115398074 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006657.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115389289 115403827 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006658.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115392042 115394402 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006659.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115392120 115395844 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006660.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115398141 115405102 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006661.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115403546 115405099 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0006662.1 MGP_C57BL6NJ_G0005532.1 mouse_genomes_project 12 115403607 115405102 + Mirg lincRNA lincRNA MGP_C57BL6NJ_T0000126.1 MGP_C57BL6NJ_G0000096.1 mouse_genomes_project 12 120717293 120717750 - MGP_C57BL6NJ_P0000126 Ighv6-6 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0035460.1 MGP_C57BL6NJ_G0020206.1 mouse_genomes_project 12 73157331 73170827 - MGP_C57BL6NJ_P0035460 Timm9 protein_coding protein_coding MGP_C57BL6NJ_T0035461.1 MGP_C57BL6NJ_G0020206.1 mouse_genomes_project 12 73157331 73170827 - MGP_C57BL6NJ_P0035461 Timm9 protein_coding protein_coding MGP_C57BL6NJ_T0013122.1 MGP_C57BL6NJ_G0011167.1 mouse_genomes_project 12 70996882 70997519 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0035079.1 MGP_C57BL6NJ_G0020059.1 mouse_genomes_project 12 30874119 30979390 - MGP_C57BL6NJ_P0035079 Prkar2b protein_coding protein_coding MGP_C57BL6NJ_T0099829.1 MGP_C57BL6NJ_G0037875.1 mouse_genomes_project 12 55319482 55319646 - Gm25679 snRNA snRNA MGP_C57BL6NJ_T0035265.1 MGP_C57BL6NJ_G0020136.1 mouse_genomes_project 12 55877835 55904745 + MGP_C57BL6NJ_P0035265 protein_coding protein_coding MGP_C57BL6NJ_T0000030.1 MGP_C57BL6NJ_G0000022.1 mouse_genomes_project 12 119518183 119518200 - MGP_C57BL6NJ_P0000030 Ighd2-6 IG_D_gene IG_D_gene MGP_C57BL6NJ_T0101148.1 MGP_C57BL6NJ_G0039194.1 mouse_genomes_project 12 115308935 115309007 + Gm27604 snoRNA snoRNA MGP_C57BL6NJ_T0036318.1 MGP_C57BL6NJ_G0020486.1 mouse_genomes_project 12 113650764 113675514 + MGP_C57BL6NJ_P0036318 Ccnk protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036319.1 MGP_C57BL6NJ_G0020486.1 mouse_genomes_project 12 113651005 113676172 + MGP_C57BL6NJ_P0036319 Ccnk protein_coding protein_coding MGP_C57BL6NJ_T0036285.1 MGP_C57BL6NJ_G0020479.1 mouse_genomes_project 12 110879520 110900513 + MGP_C57BL6NJ_P0036285 Gskip protein_coding protein_coding MGP_C57BL6NJ_T0010057.1 MGP_C57BL6NJ_G0008142.1 mouse_genomes_project 12 115367583 115367680 + Mir329 miRNA miRNA MGP_C57BL6NJ_T0010052.1 MGP_C57BL6NJ_G0008137.1 mouse_genomes_project 12 115365881 115365993 - Gm25750 miRNA miRNA MGP_C57BL6NJ_T0011583.1 MGP_C57BL6NJ_G0009668.1 mouse_genomes_project 12 34117579 34117800 - Gm24359 misc_RNA misc_RNA MGP_C57BL6NJ_T0035146.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38245447 38335383 + MGP_C57BL6NJ_P0035146 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035147.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38246149 38338703 + MGP_C57BL6NJ_P0035147 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035148.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38246351 38334914 + MGP_C57BL6NJ_P0035148 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035149.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38246386 38247881 + MGP_C57BL6NJ_P0035149 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035150.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38246416 38303910 + MGP_C57BL6NJ_P0035150 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035151.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38246915 38334911 + MGP_C57BL6NJ_P0035151 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035152.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38247180 38337787 + Etv1 protein_coding retained_intron MGP_C57BL6NJ_T0035153.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38247196 38303822 + MGP_C57BL6NJ_P0035153 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035154.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38249537 38335310 + MGP_C57BL6NJ_P0035154 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035155.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38249548 38335095 + MGP_C57BL6NJ_P0035155 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035156.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38249576 38338691 + MGP_C57BL6NJ_P0035156 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035157.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38292026 38299868 + MGP_C57BL6NJ_P0035157 Etv1 protein_coding protein_coding MGP_C57BL6NJ_T0035158.1 MGP_C57BL6NJ_G0020089.1 mouse_genomes_project 12 38306049 38334851 + Etv1 protein_coding processed_transcript MGP_C57BL6NJ_T0006688.1 MGP_C57BL6NJ_G0005554.1 mouse_genomes_project 13 27762829 27764101 + A330102I10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006689.1 MGP_C57BL6NJ_G0005554.1 mouse_genomes_project 13 27762902 27778181 + A330102I10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006690.1 MGP_C57BL6NJ_G0005554.1 mouse_genomes_project 13 27764728 27778249 + A330102I10Rik lincRNA lincRNA MGP_C57BL6NJ_T0006691.1 MGP_C57BL6NJ_G0005554.1 mouse_genomes_project 13 27765143 27794803 + A330102I10Rik lincRNA lincRNA MGP_C57BL6NJ_T0037944.1 MGP_C57BL6NJ_G0021121.1 mouse_genomes_project 13 72161681 72200551 - MGP_C57BL6NJ_P0037944 Papd7 protein_coding protein_coding MGP_C57BL6NJ_T0037945.1 MGP_C57BL6NJ_G0021121.1 mouse_genomes_project 13 72161684 72198033 - MGP_C57BL6NJ_P0037945 Papd7 protein_coding protein_coding MGP_C57BL6NJ_T0006722.1 MGP_C57BL6NJ_G0005577.1 mouse_genomes_project 13 44364352 44421856 - Gm27007 lincRNA lincRNA MGP_C57BL6NJ_T0037838.1 MGP_C57BL6NJ_G0021062.1 mouse_genomes_project 13 66214781 66234368 - MGP_C57BL6NJ_P0037838 Zfp367 protein_coding protein_coding MGP_C57BL6NJ_T0037839.1 MGP_C57BL6NJ_G0021062.1 mouse_genomes_project 13 66217162 66233595 - Zfp367 protein_coding processed_transcript MGP_C57BL6NJ_T0037840.1 MGP_C57BL6NJ_G0021062.1 mouse_genomes_project 13 66217289 66231380 - Zfp367 protein_coding processed_transcript MGP_C57BL6NJ_T0037841.1 MGP_C57BL6NJ_G0021062.1 mouse_genomes_project 13 66222227 66234368 - MGP_C57BL6NJ_P0037841 Zfp367 protein_coding protein_coding MGP_C57BL6NJ_T0006817.1 MGP_C57BL6NJ_G0005639.1 mouse_genomes_project 13 126304764 126306311 + 1700074H08Rik lincRNA lincRNA MGP_C57BL6NJ_T0013227.1 MGP_C57BL6NJ_G0011272.1 mouse_genomes_project 13 32159311 32160118 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037905.1 MGP_C57BL6NJ_G0021098.1 mouse_genomes_project 13 69937756 69942307 - MGP_C57BL6NJ_P0037905 protein_coding protein_coding MGP_C57BL6NJ_T0010116.1 MGP_C57BL6NJ_G0008201.1 mouse_genomes_project 13 19377131 19377212 + Mir1896 miRNA miRNA MGP_C57BL6NJ_T0003663.1 MGP_C57BL6NJ_G0003324.1 mouse_genomes_project 13 125212055 125233395 - Gm16263 antisense antisense MGP_C57BL6NJ_T0006782.1 MGP_C57BL6NJ_G0005614.1 mouse_genomes_project 13 98237418 98239444 - Gm26527 lincRNA lincRNA MGP_C57BL6NJ_T0036897.1 MGP_C57BL6NJ_G0020713.1 mouse_genomes_project 13 20723749 20724746 - MGP_C57BL6NJ_P0036897 Vmn1r208 protein_coding protein_coding MGP_C57BL6NJ_T0037931.1 MGP_C57BL6NJ_G0021112.1 mouse_genomes_project 13 70372340 70381760 - MGP_C57BL6NJ_P0037931 Gm9894 protein_coding protein_coding MGP_C57BL6NJ_T0102808.1 MGP_C57BL6NJ_G0040602.1 mouse_genomes_project 13 20956357 20956649 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037051.1 MGP_C57BL6NJ_G0020792.1 mouse_genomes_project 13 26382896 26389972 + MGP_C57BL6NJ_P0037051 Prl2a1 protein_coding protein_coding MGP_C57BL6NJ_T0038572.1 MGP_C57BL6NJ_G0021314.1 mouse_genomes_project 13 116138328 116142878 - MGP_C57BL6NJ_P0038572 Gapt protein_coding protein_coding MGP_C57BL6NJ_T0006773.1 MGP_C57BL6NJ_G0005609.1 mouse_genomes_project 13 87278851 87446084 + lincRNA lincRNA MGP_C57BL6NJ_T0006774.1 MGP_C57BL6NJ_G0005609.1 mouse_genomes_project 13 87278851 87300378 + lincRNA lincRNA MGP_C57BL6NJ_T0006776.1 MGP_C57BL6NJ_G0005609.1 mouse_genomes_project 13 87285556 87294739 + lincRNA lincRNA MGP_C57BL6NJ_T0006777.1 MGP_C57BL6NJ_G0005609.1 mouse_genomes_project 13 87291635 87294591 + lincRNA lincRNA MGP_C57BL6NJ_T0006778.1 MGP_C57BL6NJ_G0005609.1 mouse_genomes_project 13 87297932 87457598 + lincRNA lincRNA MGP_C57BL6NJ_T0037969.1 MGP_C57BL6NJ_G0021131.1 mouse_genomes_project 13 76150807 76160561 + MGP_C57BL6NJ_P0037969 Irx4 protein_coding protein_coding MGP_C57BL6NJ_T0037970.1 MGP_C57BL6NJ_G0021131.1 mouse_genomes_project 13 76150825 76160561 + MGP_C57BL6NJ_P0037970 Irx4 protein_coding protein_coding MGP_C57BL6NJ_T0037901.1 MGP_C57BL6NJ_G0021094.1 mouse_genomes_project 13 69862425 69884055 - MGP_C57BL6NJ_P0037901 Zfp953 protein_coding protein_coding MGP_C57BL6NJ_T0013240.1 MGP_C57BL6NJ_G0011285.1 mouse_genomes_project 13 65477133 65477469 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017808.1 MGP_C57BL6NJ_G0015640.1 mouse_genomes_project 13 20016994 20018554 + Gm11291 processed_transcript processed_transcript MGP_C57BL6NJ_T0006783.1 MGP_C57BL6NJ_G0005615.1 mouse_genomes_project 13 98450354 98453025 - Gm15907 lincRNA lincRNA MGP_C57BL6NJ_T0099897.1 MGP_C57BL6NJ_G0037943.1 mouse_genomes_project 13 121311241 121311348 + Gm25985 snRNA snRNA MGP_C57BL6NJ_T0013224.1 MGP_C57BL6NJ_G0011269.1 mouse_genomes_project 13 29888030 29893116 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038472.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109085900 109194741 - MGP_C57BL6NJ_P0038472 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038473.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109085904 109159444 - MGP_C57BL6NJ_P0038473 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038474.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109085904 109194522 - MGP_C57BL6NJ_P0038474 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038475.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109086720 109194522 - MGP_C57BL6NJ_P0038475 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038476.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109086720 109194522 - MGP_C57BL6NJ_P0038476 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038477.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109086720 109194522 - MGP_C57BL6NJ_P0038477 Erbin protein_coding protein_coding MGP_C57BL6NJ_T0038478.1 MGP_C57BL6NJ_G0021286.1 mouse_genomes_project 13 109111195 109194741 - Erbin protein_coding retained_intron MGP_C57BL6NJ_T0006769.1 MGP_C57BL6NJ_G0005607.1 mouse_genomes_project 13 84350763 84531338 + 9330111N05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006770.1 MGP_C57BL6NJ_G0005607.1 mouse_genomes_project 13 84351949 84484812 + 9330111N05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006771.1 MGP_C57BL6NJ_G0005607.1 mouse_genomes_project 13 84371695 84533778 + 9330111N05Rik lincRNA lincRNA MGP_C57BL6NJ_T0102165.1 MGP_C57BL6NJ_G0040189.1 mouse_genomes_project 13 33210953 33215038 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102166.1 MGP_C57BL6NJ_G0040189.1 mouse_genomes_project 13 33212370 33212927 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0017822.1 MGP_C57BL6NJ_G0015648.1 mouse_genomes_project 13 34485059 34487542 + 1700011B04Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017823.1 MGP_C57BL6NJ_G0015648.1 mouse_genomes_project 13 34486415 34493225 + 1700011B04Rik processed_transcript lincRNA MGP_C57BL6NJ_T0037668.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58039976 58172313 - MGP_C57BL6NJ_P0037668 Trpc7 protein_coding protein_coding MGP_C57BL6NJ_T0037669.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58039976 58172274 - MGP_C57BL6NJ_P0037669 Trpc7 protein_coding protein_coding MGP_C57BL6NJ_T0037670.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040133 58172326 - MGP_C57BL6NJ_P0037670 Trpc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037671.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040627 58172031 - MGP_C57BL6NJ_P0037671 Trpc7 protein_coding protein_coding MGP_C57BL6NJ_T0037672.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040627 58172031 - MGP_C57BL6NJ_P0037672 Trpc7 protein_coding protein_coding MGP_C57BL6NJ_T0037673.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040627 58172031 - MGP_C57BL6NJ_P0037673 Trpc7 protein_coding protein_coding MGP_C57BL6NJ_T0037674.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040627 58172031 - MGP_C57BL6NJ_P0037674 Trpc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037675.1 MGP_C57BL6NJ_G0021008.1 mouse_genomes_project 13 58040627 58172031 - MGP_C57BL6NJ_P0037675 Trpc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037214.1 MGP_C57BL6NJ_G0020858.1 mouse_genomes_project 13 38217753 38230862 - MGP_C57BL6NJ_P0037214 Eef1e1 protein_coding protein_coding MGP_C57BL6NJ_T0038302.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100902393 100933084 - Ankdd1b protein_coding processed_transcript MGP_C57BL6NJ_T0038303.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100902705 100975204 - MGP_C57BL6NJ_P0038303 Ankdd1b protein_coding protein_coding MGP_C57BL6NJ_T0038304.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100903016 100932445 - Ankdd1b protein_coding retained_intron MGP_C57BL6NJ_T0038305.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100903354 100932411 - MGP_C57BL6NJ_P0038305 Ankdd1b protein_coding protein_coding MGP_C57BL6NJ_T0038306.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100932402 100946847 - Ankdd1b protein_coding retained_intron MGP_C57BL6NJ_T0038307.1 MGP_C57BL6NJ_G0021235.1 mouse_genomes_project 13 100945169 100975242 - MGP_C57BL6NJ_P0038307 Ankdd1b protein_coding protein_coding MGP_C57BL6NJ_T0003661.1 MGP_C57BL6NJ_G0003323.1 mouse_genomes_project 13 124076766 124091534 - 4933413L06Rik antisense antisense MGP_C57BL6NJ_T0003662.1 MGP_C57BL6NJ_G0003323.1 mouse_genomes_project 13 124077021 124091510 - 4933413L06Rik antisense antisense MGP_C57BL6NJ_T0101181.1 MGP_C57BL6NJ_G0039227.1 mouse_genomes_project 13 52438704 52438840 + Gm22806 snoRNA snoRNA MGP_C57BL6NJ_T0013183.1 MGP_C57BL6NJ_G0011228.1 mouse_genomes_project 13 9069811 9070797 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036772.1 MGP_C57BL6NJ_G0020640.1 mouse_genomes_project 13 15669452 15726288 - MGP_C57BL6NJ_P0036772 Rala protein_coding protein_coding MGP_C57BL6NJ_T0102799.1 MGP_C57BL6NJ_G0040593.1 mouse_genomes_project 13 20518535 20519116 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010135.1 MGP_C57BL6NJ_G0008220.1 mouse_genomes_project 13 51950791 51950929 + Gm44341 miRNA miRNA MGP_C57BL6NJ_T0037249.1 MGP_C57BL6NJ_G0020876.1 mouse_genomes_project 13 41860320 41995795 + MGP_C57BL6NJ_P0037249 Hivep1 protein_coding protein_coding MGP_C57BL6NJ_T0013209.1 MGP_C57BL6NJ_G0011254.1 mouse_genomes_project 13 23771813 23772521 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038002.1 MGP_C57BL6NJ_G0021147.1 mouse_genomes_project 13 76977790 76999731 + Tppp protein_coding processed_transcript MGP_C57BL6NJ_T0038003.1 MGP_C57BL6NJ_G0021147.1 mouse_genomes_project 13 76977802 77004113 + MGP_C57BL6NJ_P0038003 Tppp protein_coding protein_coding MGP_C57BL6NJ_T0038004.1 MGP_C57BL6NJ_G0021147.1 mouse_genomes_project 13 76977816 76989826 + Tppp protein_coding retained_intron MGP_C57BL6NJ_T0038005.1 MGP_C57BL6NJ_G0021147.1 mouse_genomes_project 13 76999109 77001959 + Tppp protein_coding processed_transcript MGP_C57BL6NJ_T0038434.1 MGP_C57BL6NJ_G0021279.1 mouse_genomes_project 13 105756420 105790604 - MGP_C57BL6NJ_P0038434 Cenph protein_coding protein_coding MGP_C57BL6NJ_T0038435.1 MGP_C57BL6NJ_G0021279.1 mouse_genomes_project 13 105786897 105790488 - Cenph protein_coding retained_intron MGP_C57BL6NJ_T0037217.1 MGP_C57BL6NJ_G0020860.1 mouse_genomes_project 13 39644495 39948011 - MGP_C57BL6NJ_P0037217 Ofcc1 protein_coding protein_coding MGP_C57BL6NJ_T0038377.1 MGP_C57BL6NJ_G0021261.1 mouse_genomes_project 13 104134561 104216577 + MGP_C57BL6NJ_P0038377 Mrps27 protein_coding protein_coding MGP_C57BL6NJ_T0038378.1 MGP_C57BL6NJ_G0021261.1 mouse_genomes_project 13 104134581 104216586 + MGP_C57BL6NJ_P0038378 Mrps27 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038521.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112464709 112530171 - MGP_C57BL6NJ_P0038521 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0038522.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112466973 112530167 - MGP_C57BL6NJ_P0038522 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0038523.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112467565 112530179 - MGP_C57BL6NJ_P0038523 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0038524.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112467836 112504951 - MGP_C57BL6NJ_P0038524 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0038525.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112469470 112530080 - MGP_C57BL6NJ_P0038525 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0038526.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112475270 112483782 - MGP_C57BL6NJ_P0038526 Kif2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038527.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112487926 112529802 - MGP_C57BL6NJ_P0038527 Kif2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038528.1 MGP_C57BL6NJ_G0021303.1 mouse_genomes_project 13 112495521 112502115 - MGP_C57BL6NJ_P0038528 Kif2a protein_coding protein_coding MGP_C57BL6NJ_T0010114.1 MGP_C57BL6NJ_G0008199.1 mouse_genomes_project 13 15526239 15526360 + Mir466i miRNA miRNA MGP_C57BL6NJ_T0037243.1 MGP_C57BL6NJ_G0020873.1 mouse_genomes_project 13 41376689 41412969 + MGP_C57BL6NJ_P0037243 Tmem170b protein_coding protein_coding MGP_C57BL6NJ_T0037106.1 MGP_C57BL6NJ_G0020818.1 mouse_genomes_project 13 32057642 32075545 + MGP_C57BL6NJ_P0037106 Serpinb9b protein_coding protein_coding MGP_C57BL6NJ_T0102161.1 MGP_C57BL6NJ_G0040188.1 mouse_genomes_project 13 22871659 22878940 - transcribed_processed_pseudogene retained_intron MGP_C57BL6NJ_T0102162.1 MGP_C57BL6NJ_G0040188.1 mouse_genomes_project 13 22872395 22873099 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102163.1 MGP_C57BL6NJ_G0040188.1 mouse_genomes_project 13 22872839 22878770 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102164.1 MGP_C57BL6NJ_G0040188.1 mouse_genomes_project 13 22872936 22878711 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0038156.1 MGP_C57BL6NJ_G0021186.1 mouse_genomes_project 13 93574422 93653736 + MGP_C57BL6NJ_P0038156 Hapln1 protein_coding protein_coding MGP_C57BL6NJ_T0037244.1 MGP_C57BL6NJ_G0020874.1 mouse_genomes_project 13 41427255 41428083 + MGP_C57BL6NJ_P0037244 Gm5082 protein_coding protein_coding MGP_C57BL6NJ_T0010127.1 MGP_C57BL6NJ_G0008212.1 mouse_genomes_project 13 37584149 37584265 + Gm27387 miRNA miRNA MGP_C57BL6NJ_T0013271.1 MGP_C57BL6NJ_G0011316.1 mouse_genomes_project 13 117222876 117223349 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001009.1 MGP_C57BL6NJ_G0000918.1 mouse_genomes_project 13 40456754 40459405 - TEC TEC MGP_C57BL6NJ_T0038326.1 MGP_C57BL6NJ_G0021241.1 mouse_genomes_project 13 101567149 101582248 - MGP_C57BL6NJ_P0038326 1700029F12Rik protein_coding protein_coding MGP_C57BL6NJ_T0037986.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76619557 76641940 - MGP_C57BL6NJ_P0037986 Slc6a19 protein_coding protein_coding MGP_C57BL6NJ_T0037987.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76619559 76641855 - Slc6a19 protein_coding retained_intron MGP_C57BL6NJ_T0037988.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76619559 76632446 - Slc6a19 protein_coding processed_transcript MGP_C57BL6NJ_T0037989.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76628899 76646025 - Slc6a19 protein_coding processed_transcript MGP_C57BL6NJ_T0037990.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76629382 76632189 - Slc6a19 protein_coding processed_transcript MGP_C57BL6NJ_T0037991.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76629550 76641841 - MGP_C57BL6NJ_P0037991 Slc6a19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037992.1 MGP_C57BL6NJ_G0021140.1 mouse_genomes_project 13 76629588 76632067 - Slc6a19 protein_coding processed_transcript MGP_C57BL6NJ_T0010124.1 MGP_C57BL6NJ_G0008209.1 mouse_genomes_project 13 22168225 22168354 - Gm44344 miRNA miRNA MGP_C57BL6NJ_T0037091.1 MGP_C57BL6NJ_G0020811.1 mouse_genomes_project 13 31728543 31819627 - MGP_C57BL6NJ_P0037091 Mylk4 protein_coding protein_coding MGP_C57BL6NJ_T0037092.1 MGP_C57BL6NJ_G0020811.1 mouse_genomes_project 13 31735855 31819564 - MGP_C57BL6NJ_P0037092 Mylk4 protein_coding protein_coding MGP_C57BL6NJ_T0037093.1 MGP_C57BL6NJ_G0020811.1 mouse_genomes_project 13 31740048 31790098 - MGP_C57BL6NJ_P0037093 Mylk4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037094.1 MGP_C57BL6NJ_G0020811.1 mouse_genomes_project 13 31804367 31821802 - Mylk4 protein_coding processed_transcript MGP_C57BL6NJ_T0006703.1 MGP_C57BL6NJ_G0005564.1 mouse_genomes_project 13 30477880 30494890 - 1700018A04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006704.1 MGP_C57BL6NJ_G0005564.1 mouse_genomes_project 13 30479785 30494898 - 1700018A04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006705.1 MGP_C57BL6NJ_G0005564.1 mouse_genomes_project 13 30490671 30494898 - 1700018A04Rik lincRNA lincRNA MGP_C57BL6NJ_T0006779.1 MGP_C57BL6NJ_G0005611.1 mouse_genomes_project 13 87465961 87509458 + 2810049E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0099215.1 MGP_C57BL6NJ_G0037279.1 mouse_genomes_project 13 32729447 32729659 + Gm25043 ribozyme ribozyme MGP_C57BL6NJ_T0038166.1 MGP_C57BL6NJ_G0021188.1 mouse_genomes_project 13 93824937 94155786 - MGP_C57BL6NJ_P0038166 Xrcc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038167.1 MGP_C57BL6NJ_G0021188.1 mouse_genomes_project 13 93899751 94155871 - MGP_C57BL6NJ_P0038167 Xrcc4 protein_coding protein_coding MGP_C57BL6NJ_T0038168.1 MGP_C57BL6NJ_G0021188.1 mouse_genomes_project 13 94120527 94155799 - MGP_C57BL6NJ_P0038168 Xrcc4 protein_coding protein_coding MGP_C57BL6NJ_T0038169.1 MGP_C57BL6NJ_G0021188.1 mouse_genomes_project 13 94120562 94155345 - MGP_C57BL6NJ_P0038169 Xrcc4 protein_coding protein_coding MGP_C57BL6NJ_T0036948.1 MGP_C57BL6NJ_G0020753.1 mouse_genomes_project 13 22032918 22049332 + Slc17a2 protein_coding retained_intron MGP_C57BL6NJ_T0036949.1 MGP_C57BL6NJ_G0020753.1 mouse_genomes_project 13 22032952 22051106 + MGP_C57BL6NJ_P0036949 Slc17a2 protein_coding protein_coding MGP_C57BL6NJ_T0036950.1 MGP_C57BL6NJ_G0020753.1 mouse_genomes_project 13 22032970 22049103 + Slc17a2 protein_coding retained_intron MGP_C57BL6NJ_T0036951.1 MGP_C57BL6NJ_G0020753.1 mouse_genomes_project 13 22032973 22048684 + MGP_C57BL6NJ_P0036951 Slc17a2 protein_coding protein_coding MGP_C57BL6NJ_T0013241.1 MGP_C57BL6NJ_G0011286.1 mouse_genomes_project 13 66614633 66616010 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037054.1 MGP_C57BL6NJ_G0020795.1 mouse_genomes_project 13 27689319 27694102 - MGP_C57BL6NJ_P0037054 Sox4 protein_coding protein_coding MGP_C57BL6NJ_T0038612.1 MGP_C57BL6NJ_G0021330.1 mouse_genomes_project 13 119013854 119020381 + MGP_C57BL6NJ_P0038612 Mcidas protein_coding protein_coding MGP_C57BL6NJ_T0037025.1 MGP_C57BL6NJ_G0020777.1 mouse_genomes_project 13 25643170 25648281 + MGP_C57BL6NJ_P0037025 protein_coding protein_coding MGP_C57BL6NJ_T0102796.1 MGP_C57BL6NJ_G0040590.1 mouse_genomes_project 13 20466571 20469021 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010136.1 MGP_C57BL6NJ_G0008221.1 mouse_genomes_project 13 52570807 52572270 + miRNA miRNA MGP_C57BL6NJ_T0036602.1 MGP_C57BL6NJ_G0020584.1 mouse_genomes_project 13 401568 408769 + MGP_C57BL6NJ_P0036602 Calm5 protein_coding protein_coding MGP_C57BL6NJ_T0036603.1 MGP_C57BL6NJ_G0020584.1 mouse_genomes_project 13 408020 408483 + MGP_C57BL6NJ_P0036603 Calm5 protein_coding protein_coding MGP_C57BL6NJ_T0037330.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47277864 47291528 - Dek protein_coding processed_transcript MGP_C57BL6NJ_T0037331.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47277871 47299280 - MGP_C57BL6NJ_P0037331 Dek protein_coding protein_coding MGP_C57BL6NJ_T0037332.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47281684 47299291 - MGP_C57BL6NJ_P0037332 Dek protein_coding protein_coding MGP_C57BL6NJ_T0037333.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47291244 47298920 - MGP_C57BL6NJ_P0037333 Dek protein_coding protein_coding MGP_C57BL6NJ_T0037334.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47294576 47299244 - Dek protein_coding processed_transcript MGP_C57BL6NJ_T0037335.1 MGP_C57BL6NJ_G0020903.1 mouse_genomes_project 13 47298470 47299273 - Dek protein_coding processed_transcript MGP_C57BL6NJ_T0037899.1 MGP_C57BL6NJ_G0021093.1 mouse_genomes_project 13 69841439 69883986 - MGP_C57BL6NJ_P0037899 Gm28044 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037900.1 MGP_C57BL6NJ_G0021093.1 mouse_genomes_project 13 69843650 69872476 - Gm28044 protein_coding processed_transcript MGP_C57BL6NJ_T0011624.1 MGP_C57BL6NJ_G0009709.1 mouse_genomes_project 13 114144012 114144208 - Gm28016 misc_RNA misc_RNA MGP_C57BL6NJ_T0013192.1 MGP_C57BL6NJ_G0011237.1 mouse_genomes_project 13 19897019 19899814 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013243.1 MGP_C57BL6NJ_G0011288.1 mouse_genomes_project 13 70237221 70238210 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102800.1 MGP_C57BL6NJ_G0040594.1 mouse_genomes_project 13 20523470 20523835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036607.1 MGP_C57BL6NJ_G0020587.1 mouse_genomes_project 13 507977 512641 - MGP_C57BL6NJ_P0036607 Ucn3 protein_coding protein_coding MGP_C57BL6NJ_T0006811.1 MGP_C57BL6NJ_G0005636.1 mouse_genomes_project 13 117951903 117965348 + Gm15323 lincRNA lincRNA MGP_C57BL6NJ_T0013181.1 MGP_C57BL6NJ_G0011226.1 mouse_genomes_project 13 2119324 2119537 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037031.1 MGP_C57BL6NJ_G0020781.1 mouse_genomes_project 13 25806640 25813266 + MGP_C57BL6NJ_P0037031 Prl6a1 protein_coding protein_coding MGP_C57BL6NJ_T0037032.1 MGP_C57BL6NJ_G0020781.1 mouse_genomes_project 13 25807959 25813266 + MGP_C57BL6NJ_P0037032 Prl6a1 protein_coding protein_coding MGP_C57BL6NJ_T0099869.1 MGP_C57BL6NJ_G0037915.1 mouse_genomes_project 13 19419820 19419884 - Gm23779 snRNA snRNA MGP_C57BL6NJ_T0038678.1 MGP_C57BL6NJ_G0021360.1 mouse_genomes_project 13 126094065 126224442 + MGP_C57BL6NJ_P0038678 protein_coding protein_coding MGP_C57BL6NJ_T0038014.1 MGP_C57BL6NJ_G0021152.1 mouse_genomes_project 13 77284191 77298397 - MGP_C57BL6NJ_P0038014 Pdcd6 protein_coding protein_coding MGP_C57BL6NJ_T0036725.1 MGP_C57BL6NJ_G0020620.1 mouse_genomes_project 13 10219592 10219853 - MGP_C57BL6NJ_P0036725 Gm11360 protein_coding protein_coding MGP_C57BL6NJ_T0036840.1 MGP_C57BL6NJ_G0020669.1 mouse_genomes_project 13 19472351 19473405 - MGP_C57BL6NJ_P0036840 Olfr1366 protein_coding protein_coding MGP_C57BL6NJ_T0036842.1 MGP_C57BL6NJ_G0020669.1 mouse_genomes_project 13 19472615 19478153 - MGP_C57BL6NJ_P0036842 Olfr1366 protein_coding protein_coding MGP_C57BL6NJ_T0037101.1 MGP_C57BL6NJ_G0020816.1 mouse_genomes_project 13 31994560 32008419 + MGP_C57BL6NJ_P0037101 Serpinb6b protein_coding protein_coding MGP_C57BL6NJ_T0037102.1 MGP_C57BL6NJ_G0020816.1 mouse_genomes_project 13 31994795 32008414 + MGP_C57BL6NJ_P0037102 Serpinb6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037103.1 MGP_C57BL6NJ_G0020816.1 mouse_genomes_project 13 31994854 32008414 + Serpinb6b protein_coding processed_transcript MGP_C57BL6NJ_T0101169.1 MGP_C57BL6NJ_G0039215.1 mouse_genomes_project 13 22566482 22566605 - Gm23340 snoRNA snoRNA MGP_C57BL6NJ_T0010165.1 MGP_C57BL6NJ_G0008250.1 mouse_genomes_project 13 100845516 100845629 + Gm25213 miRNA miRNA MGP_C57BL6NJ_T0102831.1 MGP_C57BL6NJ_G0040625.1 mouse_genomes_project 13 32939991 32942535 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037993.1 MGP_C57BL6NJ_G0021141.1 mouse_genomes_project 13 76707725 76760603 + MGP_C57BL6NJ_P0037993 Slc12a7 protein_coding protein_coding MGP_C57BL6NJ_T0037469.1 MGP_C57BL6NJ_G0020950.1 mouse_genomes_project 13 55224649 55257476 + MGP_C57BL6NJ_P0037469 Hrh2 protein_coding protein_coding MGP_C57BL6NJ_T0038220.1 MGP_C57BL6NJ_G0021201.1 mouse_genomes_project 13 96505417 96539460 + MGP_C57BL6NJ_P0038220 Dhfr protein_coding protein_coding MGP_C57BL6NJ_T0010126.1 MGP_C57BL6NJ_G0008211.1 mouse_genomes_project 13 30559373 30559471 - Gm27516 miRNA miRNA MGP_C57BL6NJ_T0011622.1 MGP_C57BL6NJ_G0009707.1 mouse_genomes_project 13 108655301 108655582 - Gm24441 misc_RNA misc_RNA MGP_C57BL6NJ_T0037367.1 MGP_C57BL6NJ_G0020914.1 mouse_genomes_project 13 49620318 49635993 - MGP_C57BL6NJ_P0037367 Card19 protein_coding protein_coding MGP_C57BL6NJ_T0036943.1 MGP_C57BL6NJ_G0020748.1 mouse_genomes_project 13 21981038 21981435 + MGP_C57BL6NJ_P0036943 Hist1h4b protein_coding protein_coding MGP_C57BL6NJ_T0017835.1 MGP_C57BL6NJ_G0015657.1 mouse_genomes_project 13 126072744 126075702 - Gm9752 processed_transcript processed_transcript MGP_C57BL6NJ_T0003599.1 MGP_C57BL6NJ_G0003288.1 mouse_genomes_project 13 40440351 40448652 + Gm26688 antisense antisense MGP_C57BL6NJ_T0038091.1 MGP_C57BL6NJ_G0021177.1 mouse_genomes_project 13 85122276 85159239 - MGP_C57BL6NJ_P0038091 Polr3g protein_coding protein_coding MGP_C57BL6NJ_T0038092.1 MGP_C57BL6NJ_G0021177.1 mouse_genomes_project 13 85122313 85135610 - Polr3g protein_coding retained_intron MGP_C57BL6NJ_T0038093.1 MGP_C57BL6NJ_G0021177.1 mouse_genomes_project 13 85142144 85159182 - MGP_C57BL6NJ_P0038093 Polr3g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038094.1 MGP_C57BL6NJ_G0021177.1 mouse_genomes_project 13 85142581 85159171 - MGP_C57BL6NJ_P0038094 Polr3g protein_coding protein_coding MGP_C57BL6NJ_T0038095.1 MGP_C57BL6NJ_G0021177.1 mouse_genomes_project 13 85147606 85159228 - Polr3g protein_coding retained_intron MGP_C57BL6NJ_T0037207.1 MGP_C57BL6NJ_G0020854.1 mouse_genomes_project 13 37732675 37757059 + MGP_C57BL6NJ_P0037207 Snrnp48 protein_coding protein_coding MGP_C57BL6NJ_T0037208.1 MGP_C57BL6NJ_G0020854.1 mouse_genomes_project 13 37732687 37756318 + MGP_C57BL6NJ_P0037208 Snrnp48 protein_coding protein_coding MGP_C57BL6NJ_T0038063.1 MGP_C57BL6NJ_G0021171.1 mouse_genomes_project 13 80880335 81378526 + MGP_C57BL6NJ_P0038063 Fam172a protein_coding protein_coding MGP_C57BL6NJ_T0038064.1 MGP_C57BL6NJ_G0021171.1 mouse_genomes_project 13 80880335 81378526 + MGP_C57BL6NJ_P0038064 Fam172a protein_coding protein_coding MGP_C57BL6NJ_T0038065.1 MGP_C57BL6NJ_G0021171.1 mouse_genomes_project 13 80880335 81378526 + MGP_C57BL6NJ_P0038065 Fam172a protein_coding protein_coding MGP_C57BL6NJ_T0037524.1 MGP_C57BL6NJ_G0020962.1 mouse_genomes_project 13 55815379 55831219 - MGP_C57BL6NJ_P0037524 Gprin1 protein_coding protein_coding MGP_C57BL6NJ_T0037525.1 MGP_C57BL6NJ_G0020962.1 mouse_genomes_project 13 55815381 55831014 - MGP_C57BL6NJ_P0037525 Gprin1 protein_coding protein_coding MGP_C57BL6NJ_T0101178.1 MGP_C57BL6NJ_G0039224.1 mouse_genomes_project 13 48912255 48913215 - Gm25232 snoRNA snoRNA MGP_C57BL6NJ_T0038295.1 MGP_C57BL6NJ_G0021230.1 mouse_genomes_project 13 100026629 100044642 - MGP_C57BL6NJ_P0038295 F2r protein_coding protein_coding MGP_C57BL6NJ_T0037200.1 MGP_C57BL6NJ_G0020850.1 mouse_genomes_project 13 37466328 37490863 - MGP_C57BL6NJ_P0037200 Ssr1 protein_coding protein_coding MGP_C57BL6NJ_T0037311.1 MGP_C57BL6NJ_G0020898.1 mouse_genomes_project 13 46840605 46890720 - MGP_C57BL6NJ_P0037311 Nup153 protein_coding protein_coding MGP_C57BL6NJ_T0037312.1 MGP_C57BL6NJ_G0020898.1 mouse_genomes_project 13 46842345 46843223 - Nup153 protein_coding retained_intron MGP_C57BL6NJ_T0037313.1 MGP_C57BL6NJ_G0020898.1 mouse_genomes_project 13 46844115 46845285 - Nup153 protein_coding retained_intron MGP_C57BL6NJ_T0037314.1 MGP_C57BL6NJ_G0020898.1 mouse_genomes_project 13 46860923 46863395 - Nup153 protein_coding retained_intron MGP_C57BL6NJ_T0037315.1 MGP_C57BL6NJ_G0020898.1 mouse_genomes_project 13 46872575 46879977 - Nup153 protein_coding processed_transcript MGP_C57BL6NJ_T0037497.1 MGP_C57BL6NJ_G0020958.1 mouse_genomes_project 13 55653319 55673983 - MGP_C57BL6NJ_P0037497 Cltb protein_coding protein_coding MGP_C57BL6NJ_T0037498.1 MGP_C57BL6NJ_G0020958.1 mouse_genomes_project 13 55654456 55660080 - MGP_C57BL6NJ_P0037498 Cltb protein_coding protein_coding MGP_C57BL6NJ_T0037499.1 MGP_C57BL6NJ_G0020958.1 mouse_genomes_project 13 55654503 55673931 - MGP_C57BL6NJ_P0037499 Cltb protein_coding protein_coding MGP_C57BL6NJ_T0037500.1 MGP_C57BL6NJ_G0020958.1 mouse_genomes_project 13 55656958 55673931 - Cltb protein_coding retained_intron MGP_C57BL6NJ_T0038234.1 MGP_C57BL6NJ_G0021209.1 mouse_genomes_project 13 97245259 97360826 - MGP_C57BL6NJ_P0038234 Cmya5 protein_coding protein_coding MGP_C57BL6NJ_T0037867.1 MGP_C57BL6NJ_G0021079.1 mouse_genomes_project 13 69348552 69353319 - MGP_C57BL6NJ_P0037867 Uqcrb protein_coding protein_coding MGP_C57BL6NJ_T0037868.1 MGP_C57BL6NJ_G0021079.1 mouse_genomes_project 13 69349001 69350727 - Uqcrb protein_coding processed_transcript MGP_C57BL6NJ_T0013196.1 MGP_C57BL6NJ_G0011241.1 mouse_genomes_project 13 20309762 20310985 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038551.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114091892 114530131 + Pde4d protein_coding processed_transcript MGP_C57BL6NJ_T0038552.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114091953 114529146 + Pde4d protein_coding processed_transcript MGP_C57BL6NJ_T0038553.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114303443 115712095 + MGP_C57BL6NJ_P0038553 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038554.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114529168 115711965 + MGP_C57BL6NJ_P0038554 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038555.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114813971 115064011 + Pde4d protein_coding processed_transcript MGP_C57BL6NJ_T0038556.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114814094 115516095 + Pde4d protein_coding retained_intron MGP_C57BL6NJ_T0038557.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114814341 115712008 + MGP_C57BL6NJ_P0038557 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038558.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 114988816 115711985 + MGP_C57BL6NJ_P0038558 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038559.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115177069 115711985 + MGP_C57BL6NJ_P0038559 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038560.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115320696 115711965 + MGP_C57BL6NJ_P0038560 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038561.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115374228 115711985 + MGP_C57BL6NJ_P0038561 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038562.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115430947 115712095 + MGP_C57BL6NJ_P0038562 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038563.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115430967 115516092 + Pde4d protein_coding retained_intron MGP_C57BL6NJ_T0038564.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115506505 115510897 + Pde4d protein_coding processed_transcript MGP_C57BL6NJ_T0038565.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115661048 115712008 + MGP_C57BL6NJ_P0038565 Pde4d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038566.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115661052 115714083 + MGP_C57BL6NJ_P0038566 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038567.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115680863 115698967 + Pde4d protein_coding retained_intron MGP_C57BL6NJ_T0038568.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115683015 115711965 + MGP_C57BL6NJ_P0038568 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038569.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115684796 115711985 + MGP_C57BL6NJ_P0038569 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0038570.1 MGP_C57BL6NJ_G0021312.1 mouse_genomes_project 13 115693198 115708969 + MGP_C57BL6NJ_P0038570 Pde4d protein_coding protein_coding MGP_C57BL6NJ_T0003590.1 MGP_C57BL6NJ_G0003281.1 mouse_genomes_project 13 22020709 22030525 - Gm11337 antisense antisense MGP_C57BL6NJ_T0038170.1 MGP_C57BL6NJ_G0021189.1 mouse_genomes_project 13 94155385 94180056 + MGP_C57BL6NJ_P0038170 Tmem167 protein_coding protein_coding MGP_C57BL6NJ_T0038171.1 MGP_C57BL6NJ_G0021189.1 mouse_genomes_project 13 94155996 94211668 + MGP_C57BL6NJ_P0038171 Tmem167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038172.1 MGP_C57BL6NJ_G0021189.1 mouse_genomes_project 13 94156024 94172460 + MGP_C57BL6NJ_P0038172 Tmem167 protein_coding protein_coding MGP_C57BL6NJ_T0003592.1 MGP_C57BL6NJ_G0003283.1 mouse_genomes_project 13 23027735 23034692 + 1700016G14Rik antisense antisense MGP_C57BL6NJ_T0010150.1 MGP_C57BL6NJ_G0008235.1 mouse_genomes_project 13 65321326 65321400 + Mir23b miRNA miRNA MGP_C57BL6NJ_T0037895.1 MGP_C57BL6NJ_G0021090.1 mouse_genomes_project 13 69774916 69793601 - MGP_C57BL6NJ_P0037895 Zfp458 protein_coding protein_coding MGP_C57BL6NJ_T0006794.1 MGP_C57BL6NJ_G0005622.1 mouse_genomes_project 13 103857517 103867555 - 2310020H05Rik lincRNA lincRNA MGP_C57BL6NJ_T0037911.1 MGP_C57BL6NJ_G0021102.1 mouse_genomes_project 13 70064555 70074892 - MGP_C57BL6NJ_P0037911 Zfp58 protein_coding protein_coding MGP_C57BL6NJ_T0037912.1 MGP_C57BL6NJ_G0021102.1 mouse_genomes_project 13 70064556 70074944 - MGP_C57BL6NJ_P0037912 Zfp58 protein_coding protein_coding MGP_C57BL6NJ_T0037914.1 MGP_C57BL6NJ_G0021102.1 mouse_genomes_project 13 70066035 70074876 - MGP_C57BL6NJ_P0037914 Zfp58 protein_coding protein_coding MGP_C57BL6NJ_T0037915.1 MGP_C57BL6NJ_G0021102.1 mouse_genomes_project 13 70066250 70074833 - MGP_C57BL6NJ_P0037915 Zfp58 protein_coding protein_coding MGP_C57BL6NJ_T0036726.1 MGP_C57BL6NJ_G0020621.1 mouse_genomes_project 13 10774865 10787690 - MGP_C57BL6NJ_P0036726 protein_coding protein_coding MGP_C57BL6NJ_T0037898.1 MGP_C57BL6NJ_G0021092.1 mouse_genomes_project 13 69837919 69855520 - MGP_C57BL6NJ_P0037898 Zfp595 protein_coding protein_coding MGP_C57BL6NJ_T0006727.1 MGP_C57BL6NJ_G0005580.1 mouse_genomes_project 13 48245298 48305578 - 4931429P17Rik lincRNA lincRNA MGP_C57BL6NJ_T0038488.1 MGP_C57BL6NJ_G0021290.1 mouse_genomes_project 13 109464716 109488963 + MGP_C57BL6NJ_P0038488 Trim23 protein_coding protein_coding MGP_C57BL6NJ_T0038489.1 MGP_C57BL6NJ_G0021290.1 mouse_genomes_project 13 109464758 109489318 + MGP_C57BL6NJ_P0038489 Trim23 protein_coding protein_coding MGP_C57BL6NJ_T0038490.1 MGP_C57BL6NJ_G0021290.1 mouse_genomes_project 13 109464780 109475649 + MGP_C57BL6NJ_P0038490 Trim23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038491.1 MGP_C57BL6NJ_G0021290.1 mouse_genomes_project 13 109465017 109487994 + MGP_C57BL6NJ_P0038491 Trim23 protein_coding protein_coding MGP_C57BL6NJ_T0037684.1 MGP_C57BL6NJ_G0021011.1 mouse_genomes_project 13 59526518 59529196 - MGP_C57BL6NJ_P0037684 Hnrnpa0 protein_coding protein_coding MGP_C57BL6NJ_T0038179.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591061 95835209 + Ssbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0038180.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591804 95850894 + MGP_C57BL6NJ_P0038180 Ssbp2 protein_coding protein_coding MGP_C57BL6NJ_T0038181.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591845 95848701 + MGP_C57BL6NJ_P0038181 Ssbp2 protein_coding protein_coding MGP_C57BL6NJ_T0038182.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591881 95673961 + MGP_C57BL6NJ_P0038182 Ssbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038183.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591914 95818456 + Ssbp2 protein_coding retained_intron MGP_C57BL6NJ_T0038184.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591917 95696928 + Ssbp2 protein_coding retained_intron MGP_C57BL6NJ_T0038185.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591935 95659602 + Ssbp2 protein_coding retained_intron MGP_C57BL6NJ_T0038186.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95591941 95848160 + MGP_C57BL6NJ_P0038186 Ssbp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038187.1 MGP_C57BL6NJ_G0021194.1 mouse_genomes_project 13 95816484 95838897 + Ssbp2 protein_coding retained_intron MGP_C57BL6NJ_T0037847.1 MGP_C57BL6NJ_G0021065.1 mouse_genomes_project 13 66379680 66403258 - MGP_C57BL6NJ_P0037847 Aaed1 protein_coding protein_coding MGP_C57BL6NJ_T0006796.1 MGP_C57BL6NJ_G0005624.1 mouse_genomes_project 13 104194341 104213637 - 6430562O15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006797.1 MGP_C57BL6NJ_G0005624.1 mouse_genomes_project 13 104209625 104213880 - 6430562O15Rik lincRNA lincRNA MGP_C57BL6NJ_T0099882.1 MGP_C57BL6NJ_G0037928.1 mouse_genomes_project 13 45047542 45047646 - Gm23104 snRNA snRNA MGP_C57BL6NJ_T0006802.1 MGP_C57BL6NJ_G0005629.1 mouse_genomes_project 13 113256179 113260945 + 1700006H21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006803.1 MGP_C57BL6NJ_G0005629.1 mouse_genomes_project 13 113256179 113260956 + 1700006H21Rik lincRNA lincRNA MGP_C57BL6NJ_T0011615.1 MGP_C57BL6NJ_G0009700.1 mouse_genomes_project 13 57966789 57967038 + Gm27698 misc_RNA misc_RNA MGP_C57BL6NJ_T0006814.1 MGP_C57BL6NJ_G0005638.1 mouse_genomes_project 13 125029262 125081287 + 1700003P14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006815.1 MGP_C57BL6NJ_G0005638.1 mouse_genomes_project 13 125030054 125081209 + 1700003P14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006816.1 MGP_C57BL6NJ_G0005638.1 mouse_genomes_project 13 125030070 125081212 + 1700003P14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006672.1 MGP_C57BL6NJ_G0005541.1 mouse_genomes_project 13 2546754 2549339 - 1700016G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006673.1 MGP_C57BL6NJ_G0005541.1 mouse_genomes_project 13 2546754 2548959 - 1700016G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006717.1 MGP_C57BL6NJ_G0005573.1 mouse_genomes_project 13 38556060 38561741 + 5033403F01Rik lincRNA lincRNA MGP_C57BL6NJ_T0017807.1 MGP_C57BL6NJ_G0015639.1 mouse_genomes_project 13 19372415 19377906 + 4930470G03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0037566.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215286 56244702 + MGP_C57BL6NJ_P0037566 Zfp346 protein_coding protein_coding MGP_C57BL6NJ_T0037567.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215289 56232314 + MGP_C57BL6NJ_P0037567 Zfp346 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037568.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215292 56242258 + MGP_C57BL6NJ_P0037568 Zfp346 protein_coding protein_coding MGP_C57BL6NJ_T0037569.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215311 56242626 + MGP_C57BL6NJ_P0037569 Zfp346 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037570.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215311 56240471 + MGP_C57BL6NJ_P0037570 Zfp346 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037571.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215315 56242367 + MGP_C57BL6NJ_P0037571 Zfp346 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037572.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215317 56242459 + MGP_C57BL6NJ_P0037572 Zfp346 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037573.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56215377 56242246 + MGP_C57BL6NJ_P0037573 Zfp346 protein_coding protein_coding MGP_C57BL6NJ_T0037574.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56223058 56223941 + Zfp346 protein_coding retained_intron MGP_C57BL6NJ_T0037575.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56231851 56242227 + Zfp346 protein_coding retained_intron MGP_C57BL6NJ_T0037576.1 MGP_C57BL6NJ_G0020969.1 mouse_genomes_project 13 56240094 56242501 + Zfp346 protein_coding retained_intron MGP_C57BL6NJ_T0038382.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104868191 104966769 - MGP_C57BL6NJ_P0038382 Bdp1 protein_coding protein_coding MGP_C57BL6NJ_T0038383.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104868193 104918090 - MGP_C57BL6NJ_P0038383 Bdp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038384.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104874926 104966537 - MGP_C57BL6NJ_P0038384 Bdp1 protein_coding protein_coding MGP_C57BL6NJ_T0038385.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104894910 104908898 - Bdp1 protein_coding retained_intron MGP_C57BL6NJ_T0038386.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104923280 104928328 - Bdp1 protein_coding retained_intron MGP_C57BL6NJ_T0038387.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104940617 104961199 - MGP_C57BL6NJ_P0038387 Bdp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038388.1 MGP_C57BL6NJ_G0021265.1 mouse_genomes_project 13 104960160 104966576 - MGP_C57BL6NJ_P0038388 Bdp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013222.1 MGP_C57BL6NJ_G0011267.1 mouse_genomes_project 13 29245374 29245692 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037155.1 MGP_C57BL6NJ_G0020836.1 mouse_genomes_project 13 34106516 34135479 + MGP_C57BL6NJ_P0037155 Prpf4b protein_coding protein_coding MGP_C57BL6NJ_T0037003.1 MGP_C57BL6NJ_G0020767.1 mouse_genomes_project 13 23138815 23199611 + MGP_C57BL6NJ_P0037003 D130043K22Rik protein_coding protein_coding MGP_C57BL6NJ_T0037004.1 MGP_C57BL6NJ_G0020767.1 mouse_genomes_project 13 23138815 23199604 + MGP_C57BL6NJ_P0037004 D130043K22Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037005.1 MGP_C57BL6NJ_G0020767.1 mouse_genomes_project 13 23147997 23198140 + MGP_C57BL6NJ_P0037005 D130043K22Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037006.1 MGP_C57BL6NJ_G0020767.1 mouse_genomes_project 13 23179061 23181196 + D130043K22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0037007.1 MGP_C57BL6NJ_G0020767.1 mouse_genomes_project 13 23191421 23198189 + D130043K22Rik protein_coding processed_transcript MGP_C57BL6NJ_T0037650.1 MGP_C57BL6NJ_G0020998.1 mouse_genomes_project 13 57397487 57402674 - MGP_C57BL6NJ_P0037650 Tifab protein_coding protein_coding MGP_C57BL6NJ_T0037272.1 MGP_C57BL6NJ_G0020883.1 mouse_genomes_project 13 43287293 43372002 - MGP_C57BL6NJ_P0037272 Ranbp9 protein_coding protein_coding MGP_C57BL6NJ_T0038479.1 MGP_C57BL6NJ_G0021287.1 mouse_genomes_project 13 109304830 109394929 - MGP_C57BL6NJ_P0038479 Nln protein_coding protein_coding MGP_C57BL6NJ_T0037159.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34265439 34308092 - MGP_C57BL6NJ_P0037159 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037160.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34265440 34308075 - MGP_C57BL6NJ_P0037160 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037161.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34265441 34308092 - MGP_C57BL6NJ_P0037161 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037162.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34265448 34308080 - MGP_C57BL6NJ_P0037162 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037163.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34266393 34295288 - Eci2 protein_coding processed_transcript MGP_C57BL6NJ_T0037164.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34267943 34296031 - Eci2 protein_coding processed_transcript MGP_C57BL6NJ_T0037166.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34292361 34294822 - Eci2 protein_coding retained_intron MGP_C57BL6NJ_T0037167.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34292532 34333637 - MGP_C57BL6NJ_P0037167 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037168.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34292571 34333637 - MGP_C57BL6NJ_P0037168 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037169.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34292613 34308071 - MGP_C57BL6NJ_P0037169 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037170.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34292622 34308080 - MGP_C57BL6NJ_P0037170 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037171.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34293990 34308070 - MGP_C57BL6NJ_P0037171 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037172.1 MGP_C57BL6NJ_G0020839.1 mouse_genomes_project 13 34304165 34307410 - MGP_C57BL6NJ_P0037172 Eci2 protein_coding protein_coding MGP_C57BL6NJ_T0037165.1 MGP_C57BL6NJ_G0020840.1 mouse_genomes_project 13 34273483 34304764 - MGP_C57BL6NJ_P0037165 Eci3 protein_coding protein_coding MGP_C57BL6NJ_T0037767.1 MGP_C57BL6NJ_G0021030.1 mouse_genomes_project 13 61288752 61339972 - MGP_C57BL6NJ_P0037767 Zcchc6 protein_coding protein_coding MGP_C57BL6NJ_T0037793.1 MGP_C57BL6NJ_G0021051.1 mouse_genomes_project 13 64735770 64779847 - MGP_C57BL6NJ_P0037793 Gm5141 protein_coding protein_coding MGP_C57BL6NJ_T0001025.1 MGP_C57BL6NJ_G0000934.1 mouse_genomes_project 13 103250927 103251490 - TEC TEC MGP_C57BL6NJ_T0038683.1 MGP_C57BL6NJ_G0021364.1 mouse_genomes_project 13 126390425 126415787 - MGP_C57BL6NJ_P0038683 Zfp131 protein_coding protein_coding MGP_C57BL6NJ_T0038684.1 MGP_C57BL6NJ_G0021364.1 mouse_genomes_project 13 126391590 126416295 - MGP_C57BL6NJ_P0038684 Zfp131 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006744.1 MGP_C57BL6NJ_G0005589.1 mouse_genomes_project 13 55969915 55970459 + Gm29431 lincRNA lincRNA MGP_C57BL6NJ_T0102805.1 MGP_C57BL6NJ_G0040599.1 mouse_genomes_project 13 20806198 20806742 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037460.1 MGP_C57BL6NJ_G0020944.1 mouse_genomes_project 13 54040728 54226812 - MGP_C57BL6NJ_P0037460 Ror2 protein_coding protein_coding MGP_C57BL6NJ_T0037461.1 MGP_C57BL6NJ_G0020944.1 mouse_genomes_project 13 54040733 54227387 - MGP_C57BL6NJ_P0037461 Ror2 protein_coding protein_coding MGP_C57BL6NJ_T0037462.1 MGP_C57BL6NJ_G0020944.1 mouse_genomes_project 13 54067342 54215426 - Ror2 protein_coding processed_transcript MGP_C57BL6NJ_T0036773.1 MGP_C57BL6NJ_G0020641.1 mouse_genomes_project 13 15774953 15781771 - MGP_C57BL6NJ_P0036773 Yae1d1 protein_coding protein_coding MGP_C57BL6NJ_T0006765.1 MGP_C57BL6NJ_G0005603.1 mouse_genomes_project 13 75503506 75504336 - Gm20554 lincRNA lincRNA MGP_C57BL6NJ_T0038301.1 MGP_C57BL6NJ_G0021234.1 mouse_genomes_project 13 100874539 100901847 + MGP_C57BL6NJ_P0038301 Poc5 protein_coding protein_coding MGP_C57BL6NJ_T0037351.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49438996 49558564 - MGP_C57BL6NJ_P0037351 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037352.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49438996 49558562 - MGP_C57BL6NJ_P0037352 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037353.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49438996 49558564 - MGP_C57BL6NJ_P0037353 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037354.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49438996 49558564 - MGP_C57BL6NJ_P0037354 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037355.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49439002 49557782 - MGP_C57BL6NJ_P0037355 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037356.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49439003 49557782 - MGP_C57BL6NJ_P0037356 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037357.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49440302 49466426 - MGP_C57BL6NJ_P0037357 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037358.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49440313 49483568 - MGP_C57BL6NJ_P0037358 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037359.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49440674 49558564 - MGP_C57BL6NJ_P0037359 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037360.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49441567 49558564 - MGP_C57BL6NJ_P0037360 Wnk2 protein_coding protein_coding MGP_C57BL6NJ_T0037361.1 MGP_C57BL6NJ_G0020912.1 mouse_genomes_project 13 49466871 49476544 - MGP_C57BL6NJ_P0037361 Wnk2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037920.1 MGP_C57BL6NJ_G0021105.1 mouse_genomes_project 13 70114777 70133750 - MGP_C57BL6NJ_P0037920 Zfp748 protein_coding protein_coding MGP_C57BL6NJ_T0037921.1 MGP_C57BL6NJ_G0021105.1 mouse_genomes_project 13 70122244 70133750 - MGP_C57BL6NJ_P0037921 Zfp748 protein_coding protein_coding MGP_C57BL6NJ_T0037318.1 MGP_C57BL6NJ_G0020900.1 mouse_genomes_project 13 47199381 47201674 - MGP_C57BL6NJ_P0037318 Nhlrc1 protein_coding protein_coding MGP_C57BL6NJ_T0036893.1 MGP_C57BL6NJ_G0020709.1 mouse_genomes_project 13 20563576 20564512 + MGP_C57BL6NJ_P0036893 Vmn1r203 protein_coding protein_coding MGP_C57BL6NJ_T0037938.1 MGP_C57BL6NJ_G0021115.1 mouse_genomes_project 13 70443123 70452287 + MGP_C57BL6NJ_P0037938 Gm10037 protein_coding protein_coding MGP_C57BL6NJ_T0038436.1 MGP_C57BL6NJ_G0021280.1 mouse_genomes_project 13 105793451 105798539 - Ccnb1 protein_coding retained_intron MGP_C57BL6NJ_T0038437.1 MGP_C57BL6NJ_G0021280.1 mouse_genomes_project 13 105796616 105804892 - Ccnb1 protein_coding retained_intron MGP_C57BL6NJ_T0038438.1 MGP_C57BL6NJ_G0021280.1 mouse_genomes_project 13 105797370 105808671 - MGP_C57BL6NJ_P0038438 Ccnb1 protein_coding protein_coding MGP_C57BL6NJ_T0038439.1 MGP_C57BL6NJ_G0021280.1 mouse_genomes_project 13 105805902 105808462 - Ccnb1 protein_coding retained_intron MGP_C57BL6NJ_T0037593.1 MGP_C57BL6NJ_G0020980.1 mouse_genomes_project 13 56552508 56567935 - MGP_C57BL6NJ_P0037593 F12 protein_coding protein_coding MGP_C57BL6NJ_T0037594.1 MGP_C57BL6NJ_G0020980.1 mouse_genomes_project 13 56552614 56567921 - MGP_C57BL6NJ_P0037594 F12 protein_coding protein_coding MGP_C57BL6NJ_T0038592.1 MGP_C57BL6NJ_G0021321.1 mouse_genomes_project 13 118258510 118359048 + MGP_C57BL6NJ_P0038592 Ankrd55 protein_coding protein_coding MGP_C57BL6NJ_T0038593.1 MGP_C57BL6NJ_G0021321.1 mouse_genomes_project 13 118258510 118316418 + MGP_C57BL6NJ_P0038593 Ankrd55 protein_coding protein_coding MGP_C57BL6NJ_T0038594.1 MGP_C57BL6NJ_G0021321.1 mouse_genomes_project 13 118258510 118359050 + MGP_C57BL6NJ_P0038594 Ankrd55 protein_coding protein_coding MGP_C57BL6NJ_T0038595.1 MGP_C57BL6NJ_G0021321.1 mouse_genomes_project 13 118258577 118329302 + MGP_C57BL6NJ_P0038595 Ankrd55 protein_coding protein_coding MGP_C57BL6NJ_T0037984.1 MGP_C57BL6NJ_G0021139.1 mouse_genomes_project 13 76600484 76617836 - MGP_C57BL6NJ_P0037984 Slc6a18 protein_coding protein_coding MGP_C57BL6NJ_T0037985.1 MGP_C57BL6NJ_G0021139.1 mouse_genomes_project 13 76603960 76617742 - MGP_C57BL6NJ_P0037985 Slc6a18 protein_coding protein_coding MGP_C57BL6NJ_T0101176.1 MGP_C57BL6NJ_G0039222.1 mouse_genomes_project 13 46934972 46935102 - Gm24620 snoRNA snoRNA MGP_C57BL6NJ_T0038203.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96351293 96494701 - MGP_C57BL6NJ_P0038203 Msh3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038204.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96351987 96505630 - MGP_C57BL6NJ_P0038204 Msh3 protein_coding protein_coding MGP_C57BL6NJ_T0038205.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96351995 96382191 - Msh3 protein_coding processed_transcript MGP_C57BL6NJ_T0038206.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96351996 96411199 - Msh3 protein_coding retained_intron MGP_C57BL6NJ_T0038207.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96351997 96505634 - MGP_C57BL6NJ_P0038207 Msh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038208.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96352001 96394136 - Msh3 protein_coding retained_intron MGP_C57BL6NJ_T0038209.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96352001 96505638 - MGP_C57BL6NJ_P0038209 Msh3 protein_coding protein_coding MGP_C57BL6NJ_T0038210.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96352372 96376660 - MGP_C57BL6NJ_P0038210 Msh3 protein_coding protein_coding MGP_C57BL6NJ_T0038211.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96393916 96505620 - MGP_C57BL6NJ_P0038211 Msh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038213.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96457234 96459195 - Msh3 protein_coding retained_intron MGP_C57BL6NJ_T0038214.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96458917 96505631 - MGP_C57BL6NJ_P0038214 Msh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038215.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96462389 96495028 - Msh3 protein_coding retained_intron MGP_C57BL6NJ_T0038216.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96490321 96505150 - Msh3 protein_coding processed_transcript MGP_C57BL6NJ_T0038217.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96495518 96505588 - Msh3 protein_coding retained_intron MGP_C57BL6NJ_T0038218.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96496169 96505620 - MGP_C57BL6NJ_P0038218 Msh3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038219.1 MGP_C57BL6NJ_G0021199.1 mouse_genomes_project 13 96501761 96505620 - MGP_C57BL6NJ_P0038219 Msh3 protein_coding protein_coding MGP_C57BL6NJ_T0013265.1 MGP_C57BL6NJ_G0011310.1 mouse_genomes_project 13 102065814 102066708 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036960.1 MGP_C57BL6NJ_G0020757.1 mouse_genomes_project 13 22167291 22167675 - MGP_C57BL6NJ_P0036960 Hist1h2ba protein_coding protein_coding MGP_C57BL6NJ_T0001012.1 MGP_C57BL6NJ_G0000921.1 mouse_genomes_project 13 52843034 52845188 - TEC TEC MGP_C57BL6NJ_T0037380.1 MGP_C57BL6NJ_G0020919.1 mouse_genomes_project 13 49896099 50106171 - MGP_C57BL6NJ_P0037380 Cenpp protein_coding protein_coding MGP_C57BL6NJ_T0037239.1 MGP_C57BL6NJ_G0020870.1 mouse_genomes_project 13 40993263 41020049 + MGP_C57BL6NJ_P0037239 Smim13 protein_coding protein_coding MGP_C57BL6NJ_T0036812.1 MGP_C57BL6NJ_G0020657.1 mouse_genomes_project 13 19076268 19077240 + Trim27 protein_coding processed_transcript MGP_C57BL6NJ_T0036813.1 MGP_C57BL6NJ_G0020657.1 mouse_genomes_project 13 19077036 19091546 + MGP_C57BL6NJ_P0036813 Trim27 protein_coding protein_coding MGP_C57BL6NJ_T0036814.1 MGP_C57BL6NJ_G0020657.1 mouse_genomes_project 13 19086682 19087242 + Trim27 protein_coding retained_intron MGP_C57BL6NJ_T0036815.1 MGP_C57BL6NJ_G0020657.1 mouse_genomes_project 13 19086913 19089297 + MGP_C57BL6NJ_P0036815 Trim27 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037871.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69355013 69366773 - MGP_C57BL6NJ_P0037871 protein_coding protein_coding MGP_C57BL6NJ_T0037873.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69362254 69383803 - MGP_C57BL6NJ_P0037873 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037874.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69362267 69384007 - MGP_C57BL6NJ_P0037874 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037875.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69362378 69369803 - protein_coding processed_transcript MGP_C57BL6NJ_T0037876.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69367185 69383648 - MGP_C57BL6NJ_P0037876 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037877.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69367215 69379910 - MGP_C57BL6NJ_P0037877 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037878.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69372498 69383844 - MGP_C57BL6NJ_P0037878 protein_coding protein_coding MGP_C57BL6NJ_T0037879.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69377958 69379972 - MGP_C57BL6NJ_P0037879 protein_coding protein_coding MGP_C57BL6NJ_T0037880.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69379680 69383978 - MGP_C57BL6NJ_P0037880 protein_coding protein_coding MGP_C57BL6NJ_T0037881.1 MGP_C57BL6NJ_G0021081.1 mouse_genomes_project 13 69382128 69383981 - protein_coding processed_transcript MGP_C57BL6NJ_T0102795.1 MGP_C57BL6NJ_G0040589.1 mouse_genomes_project 13 20417671 20418557 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036627.1 MGP_C57BL6NJ_G0020595.1 mouse_genomes_project 13 1171868 1184335 + MGP_C57BL6NJ_P0036627 Akr1c21 protein_coding protein_coding MGP_C57BL6NJ_T0036628.1 MGP_C57BL6NJ_G0020595.1 mouse_genomes_project 13 1174950 1179134 + Akr1c21 protein_coding retained_intron MGP_C57BL6NJ_T0099885.1 MGP_C57BL6NJ_G0037931.1 mouse_genomes_project 13 57580897 57581001 - Gm24716 snRNA snRNA MGP_C57BL6NJ_T0037913.1 MGP_C57BL6NJ_G0021103.1 mouse_genomes_project 13 70065540 70100550 - MGP_C57BL6NJ_P0037913 Gm26965 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038628.1 MGP_C57BL6NJ_G0021338.1 mouse_genomes_project 13 119670630 119697021 - MGP_C57BL6NJ_P0038628 Snx18 protein_coding protein_coding MGP_C57BL6NJ_T0006754.1 MGP_C57BL6NJ_G0005597.1 mouse_genomes_project 13 65310443 65317990 - Gm16907 lincRNA lincRNA MGP_C57BL6NJ_T0001023.1 MGP_C57BL6NJ_G0000932.1 mouse_genomes_project 13 94715336 94715749 + TEC TEC MGP_C57BL6NJ_T0017813.1 MGP_C57BL6NJ_G0015645.1 mouse_genomes_project 13 23239310 23243327 + 9330162012Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0006795.1 MGP_C57BL6NJ_G0005623.1 mouse_genomes_project 13 103882423 103889129 + Gm807 lincRNA lincRNA MGP_C57BL6NJ_T0037384.1 MGP_C57BL6NJ_G0020922.1 mouse_genomes_project 13 50027910 50037622 + MGP_C57BL6NJ_P0037384 Omd protein_coding protein_coding MGP_C57BL6NJ_T0102832.1 MGP_C57BL6NJ_G0040626.1 mouse_genomes_project 13 32968248 32969172 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037887.1 MGP_C57BL6NJ_G0021086.1 mouse_genomes_project 13 69524319 69535608 - MGP_C57BL6NJ_P0037887 protein_coding protein_coding MGP_C57BL6NJ_T0037146.1 MGP_C57BL6NJ_G0020833.1 mouse_genomes_project 13 33361098 33530559 - MGP_C57BL6NJ_P0037146 Slc22a23 protein_coding protein_coding MGP_C57BL6NJ_T0037147.1 MGP_C57BL6NJ_G0020833.1 mouse_genomes_project 13 33364804 33375469 - Slc22a23 protein_coding retained_intron MGP_C57BL6NJ_T0037148.1 MGP_C57BL6NJ_G0020833.1 mouse_genomes_project 13 33385955 33530357 - MGP_C57BL6NJ_P0037148 Slc22a23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037149.1 MGP_C57BL6NJ_G0020833.1 mouse_genomes_project 13 33405669 33529965 - Slc22a23 protein_coding processed_transcript MGP_C57BL6NJ_T0099339.1 MGP_C57BL6NJ_G0037399.1 mouse_genomes_project 13 65403609 65407172 - Gm16132 sense_intronic sense_intronic MGP_C57BL6NJ_T0036849.1 MGP_C57BL6NJ_G0020675.1 mouse_genomes_project 13 19606623 19607577 - MGP_C57BL6NJ_P0036849 Olfr1361 protein_coding protein_coding MGP_C57BL6NJ_T0037720.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60937879 60938571 - Agtpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0037721.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60937880 61053941 - MGP_C57BL6NJ_P0037721 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037722.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60937882 61029879 - MGP_C57BL6NJ_P0037722 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037723.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60938222 61053938 - MGP_C57BL6NJ_P0037723 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037724.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60938222 61053574 - MGP_C57BL6NJ_P0037724 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037725.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60942223 61041089 - MGP_C57BL6NJ_P0037725 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037726.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60963208 60970654 - Agtpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0037727.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60969896 61053947 - MGP_C57BL6NJ_P0037727 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037728.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60983994 61053938 - MGP_C57BL6NJ_P0037728 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037729.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 60984004 61053946 - MGP_C57BL6NJ_P0037729 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037730.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61006245 61011041 - Agtpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0037731.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61007271 61053963 - MGP_C57BL6NJ_P0037731 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037732.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61011052 61030761 - Agtpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0037733.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61014568 61053941 - MGP_C57BL6NJ_P0037733 Agtpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037734.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61025159 61053931 - MGP_C57BL6NJ_P0037734 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037735.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61027870 61053994 - MGP_C57BL6NJ_P0037735 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037736.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61028593 61053952 - MGP_C57BL6NJ_P0037736 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037737.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61028593 61055354 - MGP_C57BL6NJ_P0037737 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037738.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61028601 61053571 - MGP_C57BL6NJ_P0037738 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037739.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61028731 61083787 - MGP_C57BL6NJ_P0037739 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037740.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61032939 61053689 - MGP_C57BL6NJ_P0037740 Agtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037741.1 MGP_C57BL6NJ_G0021021.1 mouse_genomes_project 13 61078761 61083803 - Agtpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0002643.1 MGP_C57BL6NJ_G0002527.1 mouse_genomes_project 13 17150113 17150174 + MGP_C57BL6NJ_P0002643 Trgj4 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0003647.1 MGP_C57BL6NJ_G0003314.1 mouse_genomes_project 13 99598227 99598627 + antisense antisense MGP_C57BL6NJ_T0037142.1 MGP_C57BL6NJ_G0020830.1 mouse_genomes_project 13 33215531 33251959 + MGP_C57BL6NJ_P0037142 Bphl protein_coding protein_coding MGP_C57BL6NJ_T0038582.1 MGP_C57BL6NJ_G0021319.1 mouse_genomes_project 13 117599255 117642161 + MGP_C57BL6NJ_P0038582 Mier3 protein_coding protein_coding MGP_C57BL6NJ_T0038583.1 MGP_C57BL6NJ_G0021319.1 mouse_genomes_project 13 117599402 117615362 + Mier3 protein_coding retained_intron MGP_C57BL6NJ_T0038584.1 MGP_C57BL6NJ_G0021319.1 mouse_genomes_project 13 117599403 117642158 + MGP_C57BL6NJ_P0038584 Mier3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038585.1 MGP_C57BL6NJ_G0021319.1 mouse_genomes_project 13 117599428 117641201 + MGP_C57BL6NJ_P0038585 Mier3 protein_coding protein_coding MGP_C57BL6NJ_T0038586.1 MGP_C57BL6NJ_G0021319.1 mouse_genomes_project 13 117599840 117642167 + MGP_C57BL6NJ_P0038586 Mier3 protein_coding protein_coding MGP_C57BL6NJ_T0038264.1 MGP_C57BL6NJ_G0021219.1 mouse_genomes_project 13 98681195 98685152 - MGP_C57BL6NJ_P0038264 Gm9776 protein_coding protein_coding MGP_C57BL6NJ_T0038361.1 MGP_C57BL6NJ_G0021252.1 mouse_genomes_project 13 103071074 103073566 + MGP_C57BL6NJ_P0038361 Foxd1 protein_coding protein_coding MGP_C57BL6NJ_T0013237.1 MGP_C57BL6NJ_G0011282.1 mouse_genomes_project 13 63419216 63419964 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036714.1 MGP_C57BL6NJ_G0020615.1 mouse_genomes_project 13 9442620 9518788 - MGP_C57BL6NJ_P0036714 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036715.1 MGP_C57BL6NJ_G0020615.1 mouse_genomes_project 13 9484017 9518827 - MGP_C57BL6NJ_P0036715 protein_coding protein_coding MGP_C57BL6NJ_T0011620.1 MGP_C57BL6NJ_G0009705.1 mouse_genomes_project 13 103821737 103821990 - Gm24733 misc_RNA misc_RNA MGP_C57BL6NJ_T0003582.1 MGP_C57BL6NJ_G0003274.1 mouse_genomes_project 13 16966140 17001084 - Gm43385 antisense antisense MGP_C57BL6NJ_T0013205.1 MGP_C57BL6NJ_G0011250.1 mouse_genomes_project 13 22540826 22541238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038077.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84499594 85080185 - MGP_C57BL6NJ_P0038077 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038078.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84499594 84772391 - MGP_C57BL6NJ_P0038078 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038079.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84499595 84879830 - MGP_C57BL6NJ_P0038079 Adgrv1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038080.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84511468 84771912 - Adgrv1 protein_coding processed_transcript MGP_C57BL6NJ_T0038081.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84944543 85018086 - MGP_C57BL6NJ_P0038081 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038082.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84944544 85032343 - Adgrv1 protein_coding retained_intron MGP_C57BL6NJ_T0038083.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84944544 84975450 - Adgrv1 protein_coding retained_intron MGP_C57BL6NJ_T0038084.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 84983353 84986516 - Adgrv1 protein_coding retained_intron MGP_C57BL6NJ_T0038085.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 85003287 85005691 - Adgrv1 protein_coding retained_intron MGP_C57BL6NJ_T0038086.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 85007150 85080170 - MGP_C57BL6NJ_P0038086 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038087.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 85024871 85080170 - MGP_C57BL6NJ_P0038087 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038088.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 85026486 85080172 - MGP_C57BL6NJ_P0038088 Adgrv1 protein_coding protein_coding MGP_C57BL6NJ_T0038089.1 MGP_C57BL6NJ_G0021175.1 mouse_genomes_project 13 85028786 85031568 - Adgrv1 protein_coding retained_intron MGP_C57BL6NJ_T0001006.1 MGP_C57BL6NJ_G0000916.1 mouse_genomes_project 13 37655498 37656814 - TEC TEC MGP_C57BL6NJ_T0001007.1 MGP_C57BL6NJ_G0000916.1 mouse_genomes_project 13 37656454 37656814 - TEC TEC MGP_C57BL6NJ_T0003589.1 MGP_C57BL6NJ_G0003280.1 mouse_genomes_project 13 20724078 20724892 + Gm11314 antisense antisense MGP_C57BL6NJ_T0013219.1 MGP_C57BL6NJ_G0011264.1 mouse_genomes_project 13 27905039 27905548 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038230.1 MGP_C57BL6NJ_G0021206.1 mouse_genomes_project 13 96780394 96902258 + MGP_C57BL6NJ_P0038230 Serinc5 protein_coding protein_coding MGP_C57BL6NJ_T0101180.1 MGP_C57BL6NJ_G0039226.1 mouse_genomes_project 13 50164950 50165072 + Gm23482 snoRNA snoRNA MGP_C57BL6NJ_T0037974.1 MGP_C57BL6NJ_G0021134.1 mouse_genomes_project 13 76225411 76226578 + MGP_C57BL6NJ_P0037974 Mrpl36 protein_coding protein_coding MGP_C57BL6NJ_T0037210.1 MGP_C57BL6NJ_G0020856.1 mouse_genomes_project 13 38052475 38080738 - MGP_C57BL6NJ_P0037210 Txndc5 protein_coding protein_coding MGP_C57BL6NJ_T0037211.1 MGP_C57BL6NJ_G0020856.1 mouse_genomes_project 13 38052557 38080244 - MGP_C57BL6NJ_P0037211 Txndc5 protein_coding protein_coding MGP_C57BL6NJ_T0037212.1 MGP_C57BL6NJ_G0020856.1 mouse_genomes_project 13 38052561 38058227 - Txndc5 protein_coding retained_intron MGP_C57BL6NJ_T0002733.1 MGP_C57BL6NJ_G0002609.1 mouse_genomes_project 13 17147430 17148416 + MGP_C57BL6NJ_P0002733 Gm16602 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0101171.1 MGP_C57BL6NJ_G0039217.1 mouse_genomes_project 13 30259710 30259825 + Gm22330 snoRNA snoRNA MGP_C57BL6NJ_T0013217.1 MGP_C57BL6NJ_G0011262.1 mouse_genomes_project 13 27208549 27209038 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037906.1 MGP_C57BL6NJ_G0021099.1 mouse_genomes_project 13 69951737 69968663 - MGP_C57BL6NJ_P0037906 Zfp459 protein_coding protein_coding MGP_C57BL6NJ_T0006747.1 MGP_C57BL6NJ_G0005592.1 mouse_genomes_project 13 57008518 57009254 - Gm28760 lincRNA lincRNA MGP_C57BL6NJ_T0006748.1 MGP_C57BL6NJ_G0005592.1 mouse_genomes_project 13 57008518 57009251 - Gm28760 lincRNA lincRNA MGP_C57BL6NJ_T0038379.1 MGP_C57BL6NJ_G0021262.1 mouse_genomes_project 13 104223872 104337207 - MGP_C57BL6NJ_P0038379 Map1b protein_coding protein_coding MGP_C57BL6NJ_T0010157.1 MGP_C57BL6NJ_G0008242.1 mouse_genomes_project 13 86203973 86204032 - Mir3961 miRNA miRNA MGP_C57BL6NJ_T0037958.1 MGP_C57BL6NJ_G0021127.1 mouse_genomes_project 13 73488447 73606982 - MGP_C57BL6NJ_P0037958 Adamts16 protein_coding protein_coding MGP_C57BL6NJ_T0037959.1 MGP_C57BL6NJ_G0021127.1 mouse_genomes_project 13 73488455 73606946 - MGP_C57BL6NJ_P0037959 Adamts16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037960.1 MGP_C57BL6NJ_G0021127.1 mouse_genomes_project 13 73522776 73606982 - MGP_C57BL6NJ_P0037960 Adamts16 protein_coding protein_coding MGP_C57BL6NJ_T0037961.1 MGP_C57BL6NJ_G0021127.1 mouse_genomes_project 13 73598716 73606979 - Adamts16 protein_coding retained_intron MGP_C57BL6NJ_T0038001.1 MGP_C57BL6NJ_G0021146.1 mouse_genomes_project 13 76954906 76955092 - MGP_C57BL6NJ_P0038001 Gm10126 protein_coding protein_coding MGP_C57BL6NJ_T0010138.1 MGP_C57BL6NJ_G0008223.1 mouse_genomes_project 13 56597277 56597343 + Mir6943 miRNA miRNA MGP_C57BL6NJ_T0013206.1 MGP_C57BL6NJ_G0011251.1 mouse_genomes_project 13 22569932 22570379 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038174.1 MGP_C57BL6NJ_G0021191.1 mouse_genomes_project 13 94973692 94996155 - MGP_C57BL6NJ_P0038174 Atp6ap1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038175.1 MGP_C57BL6NJ_G0021191.1 mouse_genomes_project 13 94973804 94996140 - MGP_C57BL6NJ_P0038175 Atp6ap1l protein_coding protein_coding MGP_C57BL6NJ_T0038176.1 MGP_C57BL6NJ_G0021191.1 mouse_genomes_project 13 94989634 94996183 - Atp6ap1l protein_coding processed_transcript MGP_C57BL6NJ_T0036882.1 MGP_C57BL6NJ_G0020698.1 mouse_genomes_project 13 20214350 20215247 - MGP_C57BL6NJ_P0036882 Vmn1r191 protein_coding protein_coding MGP_C57BL6NJ_T0036810.1 MGP_C57BL6NJ_G0020656.1 mouse_genomes_project 13 19035918 19036982 - MGP_C57BL6NJ_P0036810 Olfr1368 protein_coding protein_coding MGP_C57BL6NJ_T0036811.1 MGP_C57BL6NJ_G0020656.1 mouse_genomes_project 13 19036544 19039896 - MGP_C57BL6NJ_P0036811 Olfr1368 protein_coding protein_coding MGP_C57BL6NJ_T0011606.1 MGP_C57BL6NJ_G0009691.1 mouse_genomes_project 13 10882633 10882897 + Gm24065 misc_RNA misc_RNA MGP_C57BL6NJ_T0038618.1 MGP_C57BL6NJ_G0021332.1 mouse_genomes_project 13 119067761 119070704 - MGP_C57BL6NJ_P0038618 Gm10735 protein_coding protein_coding MGP_C57BL6NJ_T0036747.1 MGP_C57BL6NJ_G0020629.1 mouse_genomes_project 13 11595006 11606020 - MGP_C57BL6NJ_P0036747 Ggps1 protein_coding protein_coding MGP_C57BL6NJ_T0006759.1 MGP_C57BL6NJ_G0005601.1 mouse_genomes_project 13 72500819 72506996 - Gm26819 lincRNA lincRNA MGP_C57BL6NJ_T0038178.1 MGP_C57BL6NJ_G0021193.1 mouse_genomes_project 13 95028998 95345831 - MGP_C57BL6NJ_P0038178 Atg10 protein_coding protein_coding MGP_C57BL6NJ_T0037779.1 MGP_C57BL6NJ_G0021039.1 mouse_genomes_project 13 62519825 62522296 - MGP_C57BL6NJ_P0037779 Ctla2a protein_coding protein_coding MGP_C57BL6NJ_T0037083.1 MGP_C57BL6NJ_G0020806.1 mouse_genomes_project 13 30468536 30471736 - MGP_C57BL6NJ_P0037083 A530084C06Rik protein_coding protein_coding MGP_C57BL6NJ_T0037108.1 MGP_C57BL6NJ_G0020820.1 mouse_genomes_project 13 32193739 32206271 - MGP_C57BL6NJ_P0037108 Serpinb9c protein_coding protein_coding MGP_C57BL6NJ_T0037109.1 MGP_C57BL6NJ_G0020820.1 mouse_genomes_project 13 32194049 32204880 - MGP_C57BL6NJ_P0037109 Serpinb9c protein_coding protein_coding MGP_C57BL6NJ_T0037110.1 MGP_C57BL6NJ_G0020820.1 mouse_genomes_project 13 32202997 32205024 - MGP_C57BL6NJ_P0037110 Serpinb9c protein_coding protein_coding MGP_C57BL6NJ_T0102803.1 MGP_C57BL6NJ_G0040597.1 mouse_genomes_project 13 20659375 20660469 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036771.1 MGP_C57BL6NJ_G0020639.1 mouse_genomes_project 13 15494163 15592102 - MGP_C57BL6NJ_P0036771 Cdk13 protein_coding protein_coding MGP_C57BL6NJ_T0036935.1 MGP_C57BL6NJ_G0020742.1 mouse_genomes_project 13 21908984 21909713 + MGP_C57BL6NJ_P0036935 Hist1h1t protein_coding protein_coding MGP_C57BL6NJ_T0036733.1 MGP_C57BL6NJ_G0020627.1 mouse_genomes_project 13 11506427 11507801 - MGP_C57BL6NJ_P0036733 Gm18856 protein_coding protein_coding MGP_C57BL6NJ_T0037849.1 MGP_C57BL6NJ_G0021067.1 mouse_genomes_project 13 66532739 66540864 + MGP_C57BL6NJ_P0037849 Cdk20 protein_coding protein_coding MGP_C57BL6NJ_T0006700.1 MGP_C57BL6NJ_G0005562.1 mouse_genomes_project 13 30278029 30316128 - Gm11375 lincRNA lincRNA MGP_C57BL6NJ_T0006701.1 MGP_C57BL6NJ_G0005562.1 mouse_genomes_project 13 30314613 30316170 - Gm11375 lincRNA lincRNA MGP_C57BL6NJ_T0036677.1 MGP_C57BL6NJ_G0020608.1 mouse_genomes_project 13 5955266 5980201 - MGP_C57BL6NJ_P0036677 Gtpbp4 protein_coding protein_coding MGP_C57BL6NJ_T0038529.1 MGP_C57BL6NJ_G0021304.1 mouse_genomes_project 13 112543326 112545066 + MGP_C57BL6NJ_P0038529 3830408C21Rik protein_coding protein_coding MGP_C57BL6NJ_T0036808.1 MGP_C57BL6NJ_G0020654.1 mouse_genomes_project 13 19025462 19030535 + MGP_C57BL6NJ_P0036808 protein_coding protein_coding MGP_C57BL6NJ_T0038532.1 MGP_C57BL6NJ_G0021307.1 mouse_genomes_project 13 113647270 113649986 + MGP_C57BL6NJ_P0038532 Smim15 protein_coding protein_coding MGP_C57BL6NJ_T0001020.1 MGP_C57BL6NJ_G0000929.1 mouse_genomes_project 13 94225425 94226244 + TEC TEC MGP_C57BL6NJ_T0006751.1 MGP_C57BL6NJ_G0005595.1 mouse_genomes_project 13 61244652 61246562 + 4930528D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006752.1 MGP_C57BL6NJ_G0005595.1 mouse_genomes_project 13 61244657 61248902 + 4930528D03Rik lincRNA lincRNA MGP_C57BL6NJ_T0038032.1 MGP_C57BL6NJ_G0021159.1 mouse_genomes_project 13 78169434 78212249 + MGP_C57BL6NJ_P0038032 Pcsk1 protein_coding protein_coding MGP_C57BL6NJ_T0038033.1 MGP_C57BL6NJ_G0021159.1 mouse_genomes_project 13 78169524 78186212 + Pcsk1 protein_coding retained_intron MGP_C57BL6NJ_T0037150.1 MGP_C57BL6NJ_G0020834.1 mouse_genomes_project 13 33820895 33845448 - MGP_C57BL6NJ_P0037150 Pxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0037151.1 MGP_C57BL6NJ_G0020834.1 mouse_genomes_project 13 33820895 33845458 - MGP_C57BL6NJ_P0037151 Pxdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037152.1 MGP_C57BL6NJ_G0020834.1 mouse_genomes_project 13 33820896 33845458 - MGP_C57BL6NJ_P0037152 Pxdc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037153.1 MGP_C57BL6NJ_G0020834.1 mouse_genomes_project 13 33821923 33841356 - MGP_C57BL6NJ_P0037153 Pxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0101193.1 MGP_C57BL6NJ_G0039239.1 mouse_genomes_project 13 82436844 82436988 + Gm25383 snoRNA snoRNA MGP_C57BL6NJ_T0010158.1 MGP_C57BL6NJ_G0008243.1 mouse_genomes_project 13 87297883 87297955 + Mir9-2 miRNA miRNA MGP_C57BL6NJ_T0011616.1 MGP_C57BL6NJ_G0009701.1 mouse_genomes_project 13 57970481 57970608 + Gm27301 misc_RNA misc_RNA MGP_C57BL6NJ_T0036964.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22247026 22343412 - MGP_C57BL6NJ_P0036964 Lrrc16a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036965.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22247166 22257239 - MGP_C57BL6NJ_P0036965 Lrrc16a protein_coding protein_coding MGP_C57BL6NJ_T0036966.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22247341 22529102 - MGP_C57BL6NJ_P0036966 Lrrc16a protein_coding protein_coding MGP_C57BL6NJ_T0036967.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22247743 22529026 - MGP_C57BL6NJ_P0036967 Lrrc16a protein_coding protein_coding MGP_C57BL6NJ_T0036968.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22265806 22288641 - Lrrc16a protein_coding processed_transcript MGP_C57BL6NJ_T0036969.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22292693 22329897 - Lrrc16a protein_coding retained_intron MGP_C57BL6NJ_T0036970.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22343387 22347650 - Lrrc16a protein_coding processed_transcript MGP_C57BL6NJ_T0036971.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22377676 22529097 - Lrrc16a protein_coding retained_intron MGP_C57BL6NJ_T0036972.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22379208 22395117 - Lrrc16a protein_coding processed_transcript MGP_C57BL6NJ_T0036973.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22395344 22528796 - MGP_C57BL6NJ_P0036973 Lrrc16a protein_coding protein_coding MGP_C57BL6NJ_T0036974.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22404769 22447766 - MGP_C57BL6NJ_P0036974 Lrrc16a protein_coding protein_coding MGP_C57BL6NJ_T0036975.1 MGP_C57BL6NJ_G0020760.1 mouse_genomes_project 13 22414877 22482228 - Lrrc16a protein_coding processed_transcript MGP_C57BL6NJ_T0038251.1 MGP_C57BL6NJ_G0021214.1 mouse_genomes_project 13 97912985 97932292 - MGP_C57BL6NJ_P0038251 Bhmt2 protein_coding protein_coding MGP_C57BL6NJ_T0037549.1 MGP_C57BL6NJ_G0020966.1 mouse_genomes_project 13 56031678 56091531 + MGP_C57BL6NJ_P0037549 Unc5a protein_coding protein_coding MGP_C57BL6NJ_T0037550.1 MGP_C57BL6NJ_G0020966.1 mouse_genomes_project 13 56031678 56091531 + MGP_C57BL6NJ_P0037550 Unc5a protein_coding protein_coding MGP_C57BL6NJ_T0037551.1 MGP_C57BL6NJ_G0020966.1 mouse_genomes_project 13 56080363 56083610 + MGP_C57BL6NJ_P0037551 Unc5a protein_coding protein_coding MGP_C57BL6NJ_T0037552.1 MGP_C57BL6NJ_G0020966.1 mouse_genomes_project 13 56088522 56090166 + Unc5a protein_coding retained_intron MGP_C57BL6NJ_T0037553.1 MGP_C57BL6NJ_G0020966.1 mouse_genomes_project 13 56089192 56090999 + MGP_C57BL6NJ_P0037553 Unc5a protein_coding protein_coding MGP_C57BL6NJ_T0038645.1 MGP_C57BL6NJ_G0021346.1 mouse_genomes_project 13 121281735 121283554 - MGP_C57BL6NJ_P0038645 Pelo protein_coding protein_coding MGP_C57BL6NJ_T0037471.1 MGP_C57BL6NJ_G0020952.1 mouse_genomes_project 13 55504847 55514853 - MGP_C57BL6NJ_P0037471 Thoc3 protein_coding protein_coding MGP_C57BL6NJ_T0037472.1 MGP_C57BL6NJ_G0020952.1 mouse_genomes_project 13 55509685 55514792 - Thoc3 protein_coding processed_transcript MGP_C57BL6NJ_T0037473.1 MGP_C57BL6NJ_G0020952.1 mouse_genomes_project 13 55513807 55514830 - Thoc3 protein_coding retained_intron MGP_C57BL6NJ_T0037982.1 MGP_C57BL6NJ_G0021137.1 mouse_genomes_project 13 76535062 76551700 + MGP_C57BL6NJ_P0037982 Clptm1l protein_coding protein_coding MGP_C57BL6NJ_T0037924.1 MGP_C57BL6NJ_G0021108.1 mouse_genomes_project 13 70244157 70267590 - MGP_C57BL6NJ_P0037924 protein_coding protein_coding MGP_C57BL6NJ_T0037925.1 MGP_C57BL6NJ_G0021108.1 mouse_genomes_project 13 70248117 70267674 - MGP_C57BL6NJ_P0037925 protein_coding protein_coding MGP_C57BL6NJ_T0037926.1 MGP_C57BL6NJ_G0021108.1 mouse_genomes_project 13 70248213 70267637 - MGP_C57BL6NJ_P0037926 protein_coding protein_coding MGP_C57BL6NJ_T0017829.1 MGP_C57BL6NJ_G0015653.1 mouse_genomes_project 13 93784819 93891557 + Gm4117 processed_transcript processed_transcript MGP_C57BL6NJ_T0017830.1 MGP_C57BL6NJ_G0015653.1 mouse_genomes_project 13 93784823 93932976 + Gm4117 processed_transcript processed_transcript MGP_C57BL6NJ_T0038090.1 MGP_C57BL6NJ_G0021176.1 mouse_genomes_project 13 85106208 85120322 + MGP_C57BL6NJ_P0038090 Lysmd3 protein_coding protein_coding MGP_C57BL6NJ_T0037620.1 MGP_C57BL6NJ_G0020985.1 mouse_genomes_project 13 56669847 56675107 - MGP_C57BL6NJ_P0037620 Dok3 protein_coding protein_coding MGP_C57BL6NJ_T0037896.1 MGP_C57BL6NJ_G0021091.1 mouse_genomes_project 13 69815258 69827575 - MGP_C57BL6NJ_P0037896 Zfp457 protein_coding protein_coding MGP_C57BL6NJ_T0037897.1 MGP_C57BL6NJ_G0021091.1 mouse_genomes_project 13 69826848 69827630 - Zfp457 protein_coding retained_intron MGP_C57BL6NJ_T0037379.1 MGP_C57BL6NJ_G0020918.1 mouse_genomes_project 13 49849939 49895063 + MGP_C57BL6NJ_P0037379 Ippk protein_coding protein_coding MGP_C57BL6NJ_T0013276.1 MGP_C57BL6NJ_G0011321.1 mouse_genomes_project 13 122439340 122439694 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006753.1 MGP_C57BL6NJ_G0005596.1 mouse_genomes_project 13 64635901 64641668 - lincRNA lincRNA MGP_C57BL6NJ_T0036716.1 MGP_C57BL6NJ_G0020616.1 mouse_genomes_project 13 9578407 9623637 + MGP_C57BL6NJ_P0036716 Heatr1 protein_coding protein_coding MGP_C57BL6NJ_T0037651.1 MGP_C57BL6NJ_G0020999.1 mouse_genomes_project 13 57484330 57485998 - MGP_C57BL6NJ_P0037651 Neurog1 protein_coding protein_coding MGP_C57BL6NJ_T0006714.1 MGP_C57BL6NJ_G0005570.1 mouse_genomes_project 13 36901614 36902611 - Gm29458 lincRNA lincRNA MGP_C57BL6NJ_T0037654.1 MGP_C57BL6NJ_G0021002.1 mouse_genomes_project 13 57681171 57719320 + MGP_C57BL6NJ_P0037654 Slc25a48 protein_coding protein_coding MGP_C57BL6NJ_T0037862.1 MGP_C57BL6NJ_G0021077.1 mouse_genomes_project 13 67419225 67429558 + MGP_C57BL6NJ_P0037862 Gm10775 protein_coding protein_coding MGP_C57BL6NJ_T0037024.1 MGP_C57BL6NJ_G0020776.1 mouse_genomes_project 13 25643164 25648287 + MGP_C57BL6NJ_P0037024 protein_coding protein_coding MGP_C57BL6NJ_T0036685.1 MGP_C57BL6NJ_G0020610.1 mouse_genomes_project 13 6273649 6691026 + MGP_C57BL6NJ_P0036685 Dip2c protein_coding protein_coding MGP_C57BL6NJ_T0036686.1 MGP_C57BL6NJ_G0020610.1 mouse_genomes_project 13 6274054 6687880 + MGP_C57BL6NJ_P0036686 Dip2c protein_coding protein_coding MGP_C57BL6NJ_T0036687.1 MGP_C57BL6NJ_G0020610.1 mouse_genomes_project 13 6274103 6687880 + MGP_C57BL6NJ_P0036687 Dip2c protein_coding protein_coding MGP_C57BL6NJ_T0036604.1 MGP_C57BL6NJ_G0020585.1 mouse_genomes_project 13 432188 481533 - MGP_C57BL6NJ_P0036604 Net1 protein_coding protein_coding MGP_C57BL6NJ_T0036605.1 MGP_C57BL6NJ_G0020585.1 mouse_genomes_project 13 432188 446288 - MGP_C57BL6NJ_P0036605 Net1 protein_coding protein_coding MGP_C57BL6NJ_T0102822.1 MGP_C57BL6NJ_G0040616.1 mouse_genomes_project 13 31898984 31902196 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102819.1 MGP_C57BL6NJ_G0040613.1 mouse_genomes_project 13 21968830 21969164 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037685.1 MGP_C57BL6NJ_G0021012.1 mouse_genomes_project 13 59562336 59569580 + MGP_C57BL6NJ_P0037685 Idnk protein_coding protein_coding MGP_C57BL6NJ_T0038265.1 MGP_C57BL6NJ_G0021220.1 mouse_genomes_project 13 98685293 98906918 + MGP_C57BL6NJ_P0038265 Ap3b1 protein_coding protein_coding MGP_C57BL6NJ_T0038266.1 MGP_C57BL6NJ_G0021220.1 mouse_genomes_project 13 98685437 98906923 + MGP_C57BL6NJ_P0038266 Ap3b1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006772.1 MGP_C57BL6NJ_G0005608.1 mouse_genomes_project 13 85228133 85233110 - Gm17259 lincRNA lincRNA MGP_C57BL6NJ_T0037117.1 MGP_C57BL6NJ_G0020826.1 mouse_genomes_project 13 33034300 33060905 - MGP_C57BL6NJ_P0037117 Serpinb6c protein_coding protein_coding MGP_C57BL6NJ_T0037118.1 MGP_C57BL6NJ_G0020826.1 mouse_genomes_project 13 33034301 33061443 - MGP_C57BL6NJ_P0037118 Serpinb6c protein_coding protein_coding MGP_C57BL6NJ_T0037049.1 MGP_C57BL6NJ_G0020791.1 mouse_genomes_project 13 26237321 26266333 - MGP_C57BL6NJ_P0037049 Prl7d1 protein_coding protein_coding MGP_C57BL6NJ_T0037050.1 MGP_C57BL6NJ_G0020791.1 mouse_genomes_project 13 26266002 26266321 - Prl7d1 protein_coding processed_transcript MGP_C57BL6NJ_T0037761.1 MGP_C57BL6NJ_G0021027.1 mouse_genomes_project 13 61236728 61242556 - MGP_C57BL6NJ_P0037761 Spata31d1d protein_coding protein_coding MGP_C57BL6NJ_T0037068.1 MGP_C57BL6NJ_G0020798.1 mouse_genomes_project 13 28965827 29082185 + MGP_C57BL6NJ_P0037068 Mboat1 protein_coding protein_coding MGP_C57BL6NJ_T0037069.1 MGP_C57BL6NJ_G0020798.1 mouse_genomes_project 13 28965860 29066598 + MGP_C57BL6NJ_P0037069 Mboat1 protein_coding protein_coding MGP_C57BL6NJ_T0037070.1 MGP_C57BL6NJ_G0020798.1 mouse_genomes_project 13 28965875 28992862 + Mboat1 protein_coding processed_transcript MGP_C57BL6NJ_T0037628.1 MGP_C57BL6NJ_G0020990.1 mouse_genomes_project 13 56777049 56786641 + MGP_C57BL6NJ_P0037628 Caml protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037629.1 MGP_C57BL6NJ_G0020990.1 mouse_genomes_project 13 56777533 56779584 + Caml protein_coding retained_intron MGP_C57BL6NJ_T0037630.1 MGP_C57BL6NJ_G0020990.1 mouse_genomes_project 13 56782508 56786639 + Caml protein_coding retained_intron MGP_C57BL6NJ_T0003604.1 MGP_C57BL6NJ_G0003293.1 mouse_genomes_project 13 49255116 49259467 + Phf2os1 antisense antisense MGP_C57BL6NJ_T0037204.1 MGP_C57BL6NJ_G0020853.1 mouse_genomes_project 13 37656349 37726502 + MGP_C57BL6NJ_P0037204 protein_coding protein_coding MGP_C57BL6NJ_T0037205.1 MGP_C57BL6NJ_G0020853.1 mouse_genomes_project 13 37656369 37726502 + MGP_C57BL6NJ_P0037205 protein_coding protein_coding MGP_C57BL6NJ_T0037206.1 MGP_C57BL6NJ_G0020853.1 mouse_genomes_project 13 37704634 37708502 + protein_coding processed_transcript MGP_C57BL6NJ_T0038453.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107928610 108563092 - MGP_C57BL6NJ_P0038453 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038454.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107928615 108563360 - MGP_C57BL6NJ_P0038454 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038455.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107930910 108314832 - MGP_C57BL6NJ_P0038455 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038456.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107931126 108159345 - MGP_C57BL6NJ_P0038456 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038457.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107931126 108104925 - MGP_C57BL6NJ_P0038457 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038458.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107938095 108104605 - MGP_C57BL6NJ_P0038458 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038459.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107951127 108159207 - MGP_C57BL6NJ_P0038459 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038460.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107963631 107968835 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038461.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107975452 107979683 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038462.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107991714 108314815 - MGP_C57BL6NJ_P0038462 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038463.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 107994499 107998508 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038464.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108048339 108563360 - MGP_C57BL6NJ_P0038464 Mast4 protein_coding protein_coding MGP_C57BL6NJ_T0038465.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108049495 108104894 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038466.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108233320 108563362 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038467.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108272483 108563397 - Mast4 protein_coding processed_transcript MGP_C57BL6NJ_T0038468.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108286699 108563351 - Mast4 protein_coding processed_transcript MGP_C57BL6NJ_T0038469.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108312163 108314831 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0038470.1 MGP_C57BL6NJ_G0021284.1 mouse_genomes_project 13 108561871 108563392 - Mast4 protein_coding retained_intron MGP_C57BL6NJ_T0037530.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864073 55867451 + MGP_C57BL6NJ_P0037530 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037531.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864076 55867545 + MGP_C57BL6NJ_P0037531 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037532.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864076 55866939 + MGP_C57BL6NJ_P0037532 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037533.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864076 55867451 + MGP_C57BL6NJ_P0037533 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037534.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864076 55866729 + MGP_C57BL6NJ_P0037534 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037535.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864078 55868435 + MGP_C57BL6NJ_P0037535 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037536.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864078 55867460 + MGP_C57BL6NJ_P0037536 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037537.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864078 55867452 + MGP_C57BL6NJ_P0037537 Eif4e1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037538.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864088 55868427 + MGP_C57BL6NJ_P0037538 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0037539.1 MGP_C57BL6NJ_G0020964.1 mouse_genomes_project 13 55864095 55867552 + MGP_C57BL6NJ_P0037539 Eif4e1b protein_coding protein_coding MGP_C57BL6NJ_T0038448.1 MGP_C57BL6NJ_G0021283.1 mouse_genomes_project 13 107884681 107899131 + MGP_C57BL6NJ_P0038448 Cd180 protein_coding protein_coding MGP_C57BL6NJ_T0038449.1 MGP_C57BL6NJ_G0021283.1 mouse_genomes_project 13 107884688 107895290 + MGP_C57BL6NJ_P0038449 Cd180 protein_coding protein_coding MGP_C57BL6NJ_T0038450.1 MGP_C57BL6NJ_G0021283.1 mouse_genomes_project 13 107884696 107896090 + MGP_C57BL6NJ_P0038450 Cd180 protein_coding protein_coding MGP_C57BL6NJ_T0038451.1 MGP_C57BL6NJ_G0021283.1 mouse_genomes_project 13 107884702 107935754 + MGP_C57BL6NJ_P0038451 Cd180 protein_coding protein_coding MGP_C57BL6NJ_T0038452.1 MGP_C57BL6NJ_G0021283.1 mouse_genomes_project 13 107884734 107935629 + MGP_C57BL6NJ_P0038452 Cd180 protein_coding protein_coding MGP_C57BL6NJ_T0006757.1 MGP_C57BL6NJ_G0005599.1 mouse_genomes_project 13 70192256 70194055 - Gm37276 lincRNA lincRNA MGP_C57BL6NJ_T0003596.1 MGP_C57BL6NJ_G0003286.1 mouse_genomes_project 13 30748742 30751780 + Gm11379 antisense antisense MGP_C57BL6NJ_T0006711.1 MGP_C57BL6NJ_G0005568.1 mouse_genomes_project 13 36869886 36872333 - Gm4035 lincRNA lincRNA MGP_C57BL6NJ_T0006712.1 MGP_C57BL6NJ_G0005568.1 mouse_genomes_project 13 36869998 36883077 - Gm4035 lincRNA lincRNA MGP_C57BL6NJ_T0037097.1 MGP_C57BL6NJ_G0020814.1 mouse_genomes_project 13 31881150 31890224 - MGP_C57BL6NJ_P0037097 Serpinb1a protein_coding protein_coding MGP_C57BL6NJ_T0037098.1 MGP_C57BL6NJ_G0020814.1 mouse_genomes_project 13 31881151 31890224 - MGP_C57BL6NJ_P0037098 Serpinb1a protein_coding protein_coding MGP_C57BL6NJ_T0036809.1 MGP_C57BL6NJ_G0020655.1 mouse_genomes_project 13 19027315 19030535 + MGP_C57BL6NJ_P0036809 protein_coding protein_coding MGP_C57BL6NJ_T0099881.1 MGP_C57BL6NJ_G0037927.1 mouse_genomes_project 13 43799802 43799910 + Gm23117 snRNA snRNA MGP_C57BL6NJ_T0036917.1 MGP_C57BL6NJ_G0020730.1 mouse_genomes_project 13 21624110 21633006 - MGP_C57BL6NJ_P0036917 Btn1a1 protein_coding protein_coding MGP_C57BL6NJ_T0036919.1 MGP_C57BL6NJ_G0020730.1 mouse_genomes_project 13 21630878 21633032 - MGP_C57BL6NJ_P0036919 Btn1a1 protein_coding protein_coding MGP_C57BL6NJ_T0010146.1 MGP_C57BL6NJ_G0008231.1 mouse_genomes_project 13 63515579 63515687 - Gm25933 miRNA miRNA MGP_C57BL6NJ_T0038046.1 MGP_C57BL6NJ_G0021167.1 mouse_genomes_project 13 79217726 79312042 + MGP_C57BL6NJ_P0038046 Ttc37 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099873.1 MGP_C57BL6NJ_G0037919.1 mouse_genomes_project 13 28977436 28977620 - Gm23206 snRNA snRNA MGP_C57BL6NJ_T0037082.1 MGP_C57BL6NJ_G0020805.1 mouse_genomes_project 13 29850504 29852277 + MGP_C57BL6NJ_P0037082 Gm5447 protein_coding protein_coding MGP_C57BL6NJ_T0006789.1 MGP_C57BL6NJ_G0005619.1 mouse_genomes_project 13 102355985 102370331 - 5330416C01Rik lincRNA lincRNA MGP_C57BL6NJ_T0006790.1 MGP_C57BL6NJ_G0005619.1 mouse_genomes_project 13 102358094 102366041 - 5330416C01Rik lincRNA lincRNA MGP_C57BL6NJ_T0006791.1 MGP_C57BL6NJ_G0005619.1 mouse_genomes_project 13 102367613 102370299 - 5330416C01Rik lincRNA lincRNA MGP_C57BL6NJ_T0010133.1 MGP_C57BL6NJ_G0008218.1 mouse_genomes_project 13 48876804 48876898 - Mirlet7a-1 miRNA miRNA MGP_C57BL6NJ_T0036621.1 MGP_C57BL6NJ_G0020592.1 mouse_genomes_project 13 829027 848289 - MGP_C57BL6NJ_P0036621 protein_coding protein_coding MGP_C57BL6NJ_T0001034.1 MGP_C57BL6NJ_G0000943.1 mouse_genomes_project 13 122611509 122614433 + TEC TEC MGP_C57BL6NJ_T0038191.1 MGP_C57BL6NJ_G0021196.1 mouse_genomes_project 13 95950379 95959633 - MGP_C57BL6NJ_P0038191 Zcchc9 protein_coding protein_coding MGP_C57BL6NJ_T0038192.1 MGP_C57BL6NJ_G0021196.1 mouse_genomes_project 13 95950380 95959633 - Zcchc9 protein_coding retained_intron MGP_C57BL6NJ_T0038193.1 MGP_C57BL6NJ_G0021196.1 mouse_genomes_project 13 95950380 95954825 - MGP_C57BL6NJ_P0038193 Zcchc9 protein_coding protein_coding MGP_C57BL6NJ_T0038194.1 MGP_C57BL6NJ_G0021196.1 mouse_genomes_project 13 95952673 95959589 - Zcchc9 protein_coding retained_intron MGP_C57BL6NJ_T0038195.1 MGP_C57BL6NJ_G0021196.1 mouse_genomes_project 13 95954329 95954840 - Zcchc9 protein_coding retained_intron MGP_C57BL6NJ_T0013193.1 MGP_C57BL6NJ_G0011238.1 mouse_genomes_project 13 19949408 19949984 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036870.1 MGP_C57BL6NJ_G0020690.1 mouse_genomes_project 13 19980069 19987600 + MGP_C57BL6NJ_P0036870 Pom121l2 protein_coding protein_coding MGP_C57BL6NJ_T0036871.1 MGP_C57BL6NJ_G0020690.1 mouse_genomes_project 13 19980395 19983355 + MGP_C57BL6NJ_P0036871 Pom121l2 protein_coding protein_coding MGP_C57BL6NJ_T0038327.1 MGP_C57BL6NJ_G0021242.1 mouse_genomes_project 13 101622316 101703498 + MGP_C57BL6NJ_P0038327 Fam169a protein_coding protein_coding MGP_C57BL6NJ_T0038328.1 MGP_C57BL6NJ_G0021242.1 mouse_genomes_project 13 101626812 101703498 + MGP_C57BL6NJ_P0038328 Fam169a protein_coding protein_coding MGP_C57BL6NJ_T0001027.1 MGP_C57BL6NJ_G0000936.1 mouse_genomes_project 13 105901156 105904572 + TEC TEC MGP_C57BL6NJ_T0099338.1 MGP_C57BL6NJ_G0037398.1 mouse_genomes_project 13 42869170 42877763 + Gm15809 sense_intronic sense_intronic MGP_C57BL6NJ_T0038310.1 MGP_C57BL6NJ_G0021237.1 mouse_genomes_project 13 101000531 101000919 + MGP_C57BL6NJ_P0038310 Gm17622 protein_coding protein_coding MGP_C57BL6NJ_T0003656.1 MGP_C57BL6NJ_G0003318.1 mouse_genomes_project 13 107959447 107961607 + Gm17160 antisense antisense MGP_C57BL6NJ_T0017809.1 MGP_C57BL6NJ_G0015641.1 mouse_genomes_project 13 20027003 20031819 + Gm11292 processed_transcript processed_transcript MGP_C57BL6NJ_T0036632.1 MGP_C57BL6NJ_G0020597.1 mouse_genomes_project 13 1400384 1466132 + MGP_C57BL6NJ_P0036632 Gm5444 protein_coding protein_coding MGP_C57BL6NJ_T0037416.1 MGP_C57BL6NJ_G0020934.1 mouse_genomes_project 13 52197121 52348624 - MGP_C57BL6NJ_P0037416 Shc3 protein_coding protein_coding MGP_C57BL6NJ_T0037087.1 MGP_C57BL6NJ_G0020810.1 mouse_genomes_project 13 30770597 31332345 - MGP_C57BL6NJ_P0037087 Gmds protein_coding protein_coding MGP_C57BL6NJ_T0037088.1 MGP_C57BL6NJ_G0020810.1 mouse_genomes_project 13 31060077 31332218 - Gmds protein_coding retained_intron MGP_C57BL6NJ_T0037089.1 MGP_C57BL6NJ_G0020810.1 mouse_genomes_project 13 31123601 31209855 - Gmds protein_coding processed_transcript MGP_C57BL6NJ_T0037090.1 MGP_C57BL6NJ_G0020810.1 mouse_genomes_project 13 31207845 31332257 - MGP_C57BL6NJ_P0037090 Gmds protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037233.1 MGP_C57BL6NJ_G0020867.1 mouse_genomes_project 13 40837750 40846312 - MGP_C57BL6NJ_P0037233 Gcm2 protein_coding protein_coding MGP_C57BL6NJ_T0013269.1 MGP_C57BL6NJ_G0011314.1 mouse_genomes_project 13 110262044 110262452 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036769.1 MGP_C57BL6NJ_G0020637.1 mouse_genomes_project 13 14607822 15471818 - MGP_C57BL6NJ_P0036769 Sugct protein_coding protein_coding MGP_C57BL6NJ_T0013251.1 MGP_C57BL6NJ_G0011296.1 mouse_genomes_project 13 79828411 79828828 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101170.1 MGP_C57BL6NJ_G0039216.1 mouse_genomes_project 13 23103073 23103195 - Gm22358 snoRNA snoRNA MGP_C57BL6NJ_T0038294.1 MGP_C57BL6NJ_G0021229.1 mouse_genomes_project 13 99932202 99945684 - MGP_C57BL6NJ_P0038294 F2rl1 protein_coding protein_coding MGP_C57BL6NJ_T0037692.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59813607 59826076 - MGP_C57BL6NJ_P0037692 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037693.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59813704 59820749 - MGP_C57BL6NJ_P0037693 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037694.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59813704 59825197 - MGP_C57BL6NJ_P0037694 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037695.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59813704 59825235 - MGP_C57BL6NJ_P0037695 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037696.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59813802 59825382 - MGP_C57BL6NJ_P0037696 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037697.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59814415 59816496 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037698.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59814425 59817413 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037699.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59814731 59816603 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037700.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59814842 59817826 - MGP_C57BL6NJ_P0037700 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037701.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59816975 59824875 - MGP_C57BL6NJ_P0037701 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037702.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817167 59818414 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037703.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817230 59819759 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037704.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817288 59824836 - MGP_C57BL6NJ_P0037704 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037705.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817317 59819640 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037706.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817792 59825220 - MGP_C57BL6NJ_P0037706 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037707.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817822 59825240 - MGP_C57BL6NJ_P0037707 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037708.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817892 59820711 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037709.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59817897 59820711 - MGP_C57BL6NJ_P0037709 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037710.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59818582 59824843 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0037711.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59819730 59824849 - MGP_C57BL6NJ_P0037711 Hnrnpk protein_coding protein_coding MGP_C57BL6NJ_T0037712.1 MGP_C57BL6NJ_G0021017.1 mouse_genomes_project 13 59821419 59825235 - Hnrnpk protein_coding retained_intron MGP_C57BL6NJ_T0010161.1 MGP_C57BL6NJ_G0008246.1 mouse_genomes_project 13 95906612 95906692 + Gm27656 miRNA miRNA MGP_C57BL6NJ_T0017832.1 MGP_C57BL6NJ_G0015655.1 mouse_genomes_project 13 117486888 117557697 + Gm15286 processed_transcript processed_transcript MGP_C57BL6NJ_T0017833.1 MGP_C57BL6NJ_G0015655.1 mouse_genomes_project 13 117525457 117555702 + Gm15286 processed_transcript processed_transcript MGP_C57BL6NJ_T0037526.1 MGP_C57BL6NJ_G0020963.1 mouse_genomes_project 13 55840178 55847899 - MGP_C57BL6NJ_P0037526 Sncb protein_coding protein_coding MGP_C57BL6NJ_T0037527.1 MGP_C57BL6NJ_G0020963.1 mouse_genomes_project 13 55840699 55847401 - MGP_C57BL6NJ_P0037527 Sncb protein_coding protein_coding MGP_C57BL6NJ_T0037528.1 MGP_C57BL6NJ_G0020963.1 mouse_genomes_project 13 55840746 55844386 - Sncb protein_coding retained_intron MGP_C57BL6NJ_T0037529.1 MGP_C57BL6NJ_G0020963.1 mouse_genomes_project 13 55846377 55847796 - Sncb protein_coding retained_intron MGP_C57BL6NJ_T0006702.1 MGP_C57BL6NJ_G0005563.1 mouse_genomes_project 13 30477147 30485951 + Gm11377 lincRNA lincRNA MGP_C57BL6NJ_T0036675.1 MGP_C57BL6NJ_G0020606.1 mouse_genomes_project 13 5922960 5927861 + MGP_C57BL6NJ_P0036675 protein_coding protein_coding MGP_C57BL6NJ_T0038331.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712615 101755011 + MGP_C57BL6NJ_P0038331 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038332.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712615 101731594 + MGP_C57BL6NJ_P0038332 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038333.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712655 101753203 + Gfm2 protein_coding retained_intron MGP_C57BL6NJ_T0038334.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712656 101755021 + MGP_C57BL6NJ_P0038334 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038335.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712663 101746117 + MGP_C57BL6NJ_P0038335 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038336.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712676 101720107 + Gfm2 protein_coding retained_intron MGP_C57BL6NJ_T0038337.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712680 101759765 + MGP_C57BL6NJ_P0038337 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038338.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712686 101722412 + MGP_C57BL6NJ_P0038338 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038339.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101712718 101755021 + MGP_C57BL6NJ_P0038339 Gfm2 protein_coding protein_coding MGP_C57BL6NJ_T0038340.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101726466 101740832 + MGP_C57BL6NJ_P0038340 Gfm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038341.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101738210 101755021 + Gfm2 protein_coding retained_intron MGP_C57BL6NJ_T0038342.1 MGP_C57BL6NJ_G0021244.1 mouse_genomes_project 13 101750018 101756056 + Gfm2 protein_coding retained_intron MGP_C57BL6NJ_T0037229.1 MGP_C57BL6NJ_G0020865.1 mouse_genomes_project 13 40751621 40757925 + MGP_C57BL6NJ_P0037229 Tmem14c protein_coding protein_coding MGP_C57BL6NJ_T0036650.1 MGP_C57BL6NJ_G0020602.1 mouse_genomes_project 13 4902457 4908233 - MGP_C57BL6NJ_P0036650 protein_coding protein_coding MGP_C57BL6NJ_T0037467.1 MGP_C57BL6NJ_G0020948.1 mouse_genomes_project 13 55063009 55067482 - MGP_C57BL6NJ_P0037467 Drd1 protein_coding protein_coding MGP_C57BL6NJ_T0037975.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76391098 76441574 + MGP_C57BL6NJ_P0037975 Lpcat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037976.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76391098 76441574 + MGP_C57BL6NJ_P0037976 Lpcat1 protein_coding protein_coding MGP_C57BL6NJ_T0037977.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76391132 76440264 + MGP_C57BL6NJ_P0037977 Lpcat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037978.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76391324 76425269 + Lpcat1 protein_coding retained_intron MGP_C57BL6NJ_T0037979.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76426437 76438993 + Lpcat1 protein_coding retained_intron MGP_C57BL6NJ_T0037980.1 MGP_C57BL6NJ_G0021135.1 mouse_genomes_project 13 76436100 76436758 + Lpcat1 protein_coding retained_intron MGP_C57BL6NJ_T0102801.1 MGP_C57BL6NJ_G0040595.1 mouse_genomes_project 13 20645504 20799709 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037775.1 MGP_C57BL6NJ_G0021036.1 mouse_genomes_project 13 62427948 62457082 - MGP_C57BL6NJ_P0037775 4930486L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0102793.1 MGP_C57BL6NJ_G0040587.1 mouse_genomes_project 13 20210493 20211259 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098997.1 MGP_C57BL6NJ_G0037061.1 mouse_genomes_project 13 46676168 46676246 + Gm24915 rRNA rRNA MGP_C57BL6NJ_T0037608.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56641457 56660133 - MGP_C57BL6NJ_P0037608 Pdlim7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037609.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56643152 56660129 - Pdlim7 protein_coding retained_intron MGP_C57BL6NJ_T0037610.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56644070 56652070 - MGP_C57BL6NJ_P0037610 Pdlim7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037611.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56644074 56660132 - Pdlim7 protein_coding retained_intron MGP_C57BL6NJ_T0037612.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56644078 56660141 - MGP_C57BL6NJ_P0037612 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0037613.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56652427 56660133 - MGP_C57BL6NJ_P0037613 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0037614.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56652428 56660133 - MGP_C57BL6NJ_P0037614 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0037615.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56652428 56660129 - MGP_C57BL6NJ_P0037615 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0037616.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56653206 56655715 - Pdlim7 protein_coding retained_intron MGP_C57BL6NJ_T0037617.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56653887 56660371 - MGP_C57BL6NJ_P0037617 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0037618.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56655504 56660116 - Pdlim7 protein_coding retained_intron MGP_C57BL6NJ_T0037619.1 MGP_C57BL6NJ_G0020984.1 mouse_genomes_project 13 56655660 56659404 - MGP_C57BL6NJ_P0037619 Pdlim7 protein_coding protein_coding MGP_C57BL6NJ_T0098819.1 MGP_C57BL6NJ_G0036883.1 mouse_genomes_project 13 27548400 27548640 + pseudogene pseudogene MGP_C57BL6NJ_T0010132.1 MGP_C57BL6NJ_G0008217.1 mouse_genomes_project 13 48876454 48876543 - Mirlet7f-1 miRNA miRNA MGP_C57BL6NJ_T0037660.1 MGP_C57BL6NJ_G0021005.1 mouse_genomes_project 13 57796641 57802720 - MGP_C57BL6NJ_P0037660 Lect2 protein_coding protein_coding MGP_C57BL6NJ_T0037055.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 27969398 28640882 - MGP_C57BL6NJ_P0037055 Cdkal1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037056.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28094816 28640909 - MGP_C57BL6NJ_P0037056 Cdkal1 protein_coding protein_coding MGP_C57BL6NJ_T0037057.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28172364 28243188 - MGP_C57BL6NJ_P0037057 Cdkal1 protein_coding protein_coding MGP_C57BL6NJ_T0037058.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28212356 28287421 - MGP_C57BL6NJ_P0037058 Cdkal1 protein_coding protein_coding MGP_C57BL6NJ_T0037059.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28242448 28640878 - Cdkal1 protein_coding retained_intron MGP_C57BL6NJ_T0037060.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28284173 28640878 - Cdkal1 protein_coding retained_intron MGP_C57BL6NJ_T0037061.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28291844 28640874 - MGP_C57BL6NJ_P0037061 Cdkal1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037062.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28487745 28640892 - Cdkal1 protein_coding retained_intron MGP_C57BL6NJ_T0037063.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28558935 28640666 - MGP_C57BL6NJ_P0037063 Cdkal1 protein_coding protein_coding MGP_C57BL6NJ_T0037064.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28585616 28640898 - MGP_C57BL6NJ_P0037064 Cdkal1 protein_coding protein_coding MGP_C57BL6NJ_T0037065.1 MGP_C57BL6NJ_G0020796.1 mouse_genomes_project 13 28620151 28640900 - MGP_C57BL6NJ_P0037065 Cdkal1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001019.1 MGP_C57BL6NJ_G0000928.1 mouse_genomes_project 13 89087572 89087811 - TEC TEC MGP_C57BL6NJ_T0036678.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6088969 6166871 + MGP_C57BL6NJ_P0036678 Larp4b protein_coding protein_coding MGP_C57BL6NJ_T0036679.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6088995 6167063 + MGP_C57BL6NJ_P0036679 Larp4b protein_coding protein_coding MGP_C57BL6NJ_T0036680.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6089000 6119020 + MGP_C57BL6NJ_P0036680 Larp4b protein_coding protein_coding MGP_C57BL6NJ_T0036681.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6089070 6170218 + MGP_C57BL6NJ_P0036681 Larp4b protein_coding protein_coding MGP_C57BL6NJ_T0036682.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6131053 6138604 + Larp4b protein_coding processed_transcript MGP_C57BL6NJ_T0036683.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6131273 6132039 + Larp4b protein_coding processed_transcript MGP_C57BL6NJ_T0036684.1 MGP_C57BL6NJ_G0020609.1 mouse_genomes_project 13 6164127 6168888 + Larp4b protein_coding retained_intron MGP_C57BL6NJ_T0037929.1 MGP_C57BL6NJ_G0021110.1 mouse_genomes_project 13 70358364 70363776 - MGP_C57BL6NJ_P0037929 Zfp85 protein_coding protein_coding MGP_C57BL6NJ_T0038680.1 MGP_C57BL6NJ_G0021362.1 mouse_genomes_project 13 126315233 126333479 + MGP_C57BL6NJ_P0038680 Hmgcs1 protein_coding protein_coding MGP_C57BL6NJ_T0037213.1 MGP_C57BL6NJ_G0020857.1 mouse_genomes_project 13 38158778 38206322 - MGP_C57BL6NJ_P0037213 Bloc1s5 protein_coding protein_coding MGP_C57BL6NJ_T0037303.1 MGP_C57BL6NJ_G0020893.1 mouse_genomes_project 13 46309659 46326719 - MGP_C57BL6NJ_P0037303 Gm10113 protein_coding protein_coding MGP_C57BL6NJ_T0037053.1 MGP_C57BL6NJ_G0020794.1 mouse_genomes_project 13 26813872 26826193 + MGP_C57BL6NJ_P0037053 Prl5a1 protein_coding protein_coding MGP_C57BL6NJ_T0098995.1 MGP_C57BL6NJ_G0037059.1 mouse_genomes_project 13 11672582 11672695 - n-R5s52 rRNA rRNA MGP_C57BL6NJ_T0013257.1 MGP_C57BL6NJ_G0011302.1 mouse_genomes_project 13 88315177 88315909 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038010.1 MGP_C57BL6NJ_G0021151.1 mouse_genomes_project 13 77193734 77265020 - MGP_C57BL6NJ_P0038010 Ahrr protein_coding protein_coding MGP_C57BL6NJ_T0038011.1 MGP_C57BL6NJ_G0021151.1 mouse_genomes_project 13 77196144 77239509 - Ahrr protein_coding retained_intron MGP_C57BL6NJ_T0038012.1 MGP_C57BL6NJ_G0021151.1 mouse_genomes_project 13 77203106 77242636 - Ahrr protein_coding processed_transcript MGP_C57BL6NJ_T0038013.1 MGP_C57BL6NJ_G0021151.1 mouse_genomes_project 13 77204901 77243392 - Ahrr protein_coding processed_transcript MGP_C57BL6NJ_T0038356.1 MGP_C57BL6NJ_G0021251.1 mouse_genomes_project 13 103029171 103036243 - MGP_C57BL6NJ_P0038356 Btf3 protein_coding protein_coding MGP_C57BL6NJ_T0038357.1 MGP_C57BL6NJ_G0021251.1 mouse_genomes_project 13 103029172 103036282 - MGP_C57BL6NJ_P0038357 Btf3 protein_coding protein_coding MGP_C57BL6NJ_T0038358.1 MGP_C57BL6NJ_G0021251.1 mouse_genomes_project 13 103029173 103030791 - Btf3 protein_coding retained_intron MGP_C57BL6NJ_T0038359.1 MGP_C57BL6NJ_G0021251.1 mouse_genomes_project 13 103029217 103035652 - MGP_C57BL6NJ_P0038359 Btf3 protein_coding protein_coding MGP_C57BL6NJ_T0038360.1 MGP_C57BL6NJ_G0021251.1 mouse_genomes_project 13 103032314 103036272 - Btf3 protein_coding retained_intron MGP_C57BL6NJ_T0101197.1 MGP_C57BL6NJ_G0039243.1 mouse_genomes_project 13 95872808 95872936 + Gm22778 snoRNA snoRNA MGP_C57BL6NJ_T0013231.1 MGP_C57BL6NJ_G0011276.1 mouse_genomes_project 13 40493951 40494719 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037824.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65869724 65908882 + MGP_C57BL6NJ_P0037824 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037825.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65869786 65927901 + MGP_C57BL6NJ_P0037825 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037826.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65869818 65891728 + Ercc6l2 protein_coding processed_transcript MGP_C57BL6NJ_T0037827.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65869818 65924945 + MGP_C57BL6NJ_P0037827 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037828.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65869818 65908847 + MGP_C57BL6NJ_P0037828 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037829.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65873974 65924591 + MGP_C57BL6NJ_P0037829 Ercc6l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037830.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65873976 65924966 + MGP_C57BL6NJ_P0037830 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037831.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65873976 65913398 + MGP_C57BL6NJ_P0037831 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0037832.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65874299 65896406 + MGP_C57BL6NJ_P0037832 Ercc6l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037833.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65925819 65927808 + Ercc6l2 protein_coding processed_transcript MGP_C57BL6NJ_T0037834.1 MGP_C57BL6NJ_G0021059.1 mouse_genomes_project 13 65927765 65958477 + MGP_C57BL6NJ_P0037834 Ercc6l2 protein_coding protein_coding MGP_C57BL6NJ_T0038655.1 MGP_C57BL6NJ_G0021352.1 mouse_genomes_project 13 124835115 124842258 - MGP_C57BL6NJ_P0038655 Mrps30 protein_coding protein_coding MGP_C57BL6NJ_T0102824.1 MGP_C57BL6NJ_G0040618.1 mouse_genomes_project 13 32140140 32145478 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037780.1 MGP_C57BL6NJ_G0021040.1 mouse_genomes_project 13 62525641 62528885 - MGP_C57BL6NJ_P0037780 Tpbpa protein_coding protein_coding MGP_C57BL6NJ_T0003584.1 MGP_C57BL6NJ_G0003276.1 mouse_genomes_project 13 19936192 19941133 - Gm11280 antisense antisense MGP_C57BL6NJ_T0036923.1 MGP_C57BL6NJ_G0020732.1 mouse_genomes_project 13 21707668 21708141 + MGP_C57BL6NJ_P0036923 Hist1h4h protein_coding protein_coding MGP_C57BL6NJ_T0037932.1 MGP_C57BL6NJ_G0021113.1 mouse_genomes_project 13 70387894 70402726 + MGP_C57BL6NJ_P0037932 Zfp493 protein_coding protein_coding MGP_C57BL6NJ_T0037933.1 MGP_C57BL6NJ_G0021113.1 mouse_genomes_project 13 70387894 70398441 + MGP_C57BL6NJ_P0037933 Zfp493 protein_coding protein_coding MGP_C57BL6NJ_T0037934.1 MGP_C57BL6NJ_G0021113.1 mouse_genomes_project 13 70395151 70399281 + Zfp493 protein_coding retained_intron MGP_C57BL6NJ_T0038311.1 MGP_C57BL6NJ_G0021238.1 mouse_genomes_project 13 101056736 101151647 + MGP_C57BL6NJ_P0038311 Col4a3bp protein_coding protein_coding MGP_C57BL6NJ_T0038312.1 MGP_C57BL6NJ_G0021238.1 mouse_genomes_project 13 101056853 101153799 + MGP_C57BL6NJ_P0038312 Col4a3bp protein_coding protein_coding MGP_C57BL6NJ_T0038313.1 MGP_C57BL6NJ_G0021238.1 mouse_genomes_project 13 101056853 101153799 + MGP_C57BL6NJ_P0038313 Col4a3bp protein_coding protein_coding MGP_C57BL6NJ_T0038630.1 MGP_C57BL6NJ_G0021340.1 mouse_genomes_project 13 119900825 120276271 + MGP_C57BL6NJ_P0038630 Arl15 protein_coding protein_coding MGP_C57BL6NJ_T0099878.1 MGP_C57BL6NJ_G0037924.1 mouse_genomes_project 13 41347324 41347490 - Gm24819 snRNA snRNA MGP_C57BL6NJ_T0036617.1 MGP_C57BL6NJ_G0020591.1 mouse_genomes_project 13 793125 812707 + MGP_C57BL6NJ_P0036617 Akr1c19 protein_coding protein_coding MGP_C57BL6NJ_T0036618.1 MGP_C57BL6NJ_G0020591.1 mouse_genomes_project 13 798165 812706 + MGP_C57BL6NJ_P0036618 Akr1c19 protein_coding protein_coding MGP_C57BL6NJ_T0036619.1 MGP_C57BL6NJ_G0020591.1 mouse_genomes_project 13 798196 812195 + MGP_C57BL6NJ_P0036619 Akr1c19 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036620.1 MGP_C57BL6NJ_G0020591.1 mouse_genomes_project 13 809674 813028 + Akr1c19 protein_coding processed_transcript MGP_C57BL6NJ_T0098820.1 MGP_C57BL6NJ_G0036884.1 mouse_genomes_project 13 47197496 47198019 + pseudogene pseudogene MGP_C57BL6NJ_T0013260.1 MGP_C57BL6NJ_G0011305.1 mouse_genomes_project 13 92072651 92073447 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101191.1 MGP_C57BL6NJ_G0039237.1 mouse_genomes_project 13 79741103 79741235 - Gm24519 snoRNA snoRNA MGP_C57BL6NJ_T0102806.1 MGP_C57BL6NJ_G0040600.1 mouse_genomes_project 13 20814084 20815190 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101172.1 MGP_C57BL6NJ_G0039218.1 mouse_genomes_project 13 30335701 30335826 + Gm23351 snoRNA snoRNA MGP_C57BL6NJ_T0036888.1 MGP_C57BL6NJ_G0020704.1 mouse_genomes_project 13 20384245 20385148 + MGP_C57BL6NJ_P0036888 Vmn1r198 protein_coding protein_coding MGP_C57BL6NJ_T0038346.1 MGP_C57BL6NJ_G0021248.1 mouse_genomes_project 13 102963665 102981355 - MGP_C57BL6NJ_P0038346 Utp15 protein_coding protein_coding MGP_C57BL6NJ_T0036929.1 MGP_C57BL6NJ_G0020738.1 mouse_genomes_project 13 21790704 21791108 + MGP_C57BL6NJ_P0036929 Hist1h4d protein_coding protein_coding MGP_C57BL6NJ_T0037595.1 MGP_C57BL6NJ_G0020981.1 mouse_genomes_project 13 56589486 56603730 + MGP_C57BL6NJ_P0037595 Grk6 protein_coding protein_coding MGP_C57BL6NJ_T0037596.1 MGP_C57BL6NJ_G0020981.1 mouse_genomes_project 13 56589486 56605616 + MGP_C57BL6NJ_P0037596 Grk6 protein_coding protein_coding MGP_C57BL6NJ_T0037597.1 MGP_C57BL6NJ_G0020981.1 mouse_genomes_project 13 56589661 56603990 + MGP_C57BL6NJ_P0037597 Grk6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101189.1 MGP_C57BL6NJ_G0039235.1 mouse_genomes_project 13 79027440 79027572 + Gm24163 snoRNA snoRNA MGP_C57BL6NJ_T0099898.1 MGP_C57BL6NJ_G0037944.1 mouse_genomes_project 13 126438062 126438169 + Gm23308 snRNA snRNA MGP_C57BL6NJ_T0006805.1 MGP_C57BL6NJ_G0005631.1 mouse_genomes_project 13 117405869 117436151 - Gm15290 lincRNA lincRNA MGP_C57BL6NJ_T0036940.1 MGP_C57BL6NJ_G0020745.1 mouse_genomes_project 13 21960514 21963018 + MGP_C57BL6NJ_P0036940 Hist1h1c protein_coding protein_coding MGP_C57BL6NJ_T0037759.1 MGP_C57BL6NJ_G0021025.1 mouse_genomes_project 13 61202263 61212392 - MGP_C57BL6NJ_P0037759 Spata31d1a protein_coding protein_coding MGP_C57BL6NJ_T0038381.1 MGP_C57BL6NJ_G0021264.1 mouse_genomes_project 13 104774313 104865837 - MGP_C57BL6NJ_P0038381 Mccc2 protein_coding protein_coding MGP_C57BL6NJ_T0038533.1 MGP_C57BL6NJ_G0021308.1 mouse_genomes_project 13 113653429 113766278 - MGP_C57BL6NJ_P0038533 Ndufaf2 protein_coding protein_coding MGP_C57BL6NJ_T0037300.1 MGP_C57BL6NJ_G0020892.1 mouse_genomes_project 13 45611720 46067661 - MGP_C57BL6NJ_P0037300 Atxn1 protein_coding protein_coding MGP_C57BL6NJ_T0037301.1 MGP_C57BL6NJ_G0020892.1 mouse_genomes_project 13 45611720 46067661 - MGP_C57BL6NJ_P0037301 Atxn1 protein_coding protein_coding MGP_C57BL6NJ_T0037302.1 MGP_C57BL6NJ_G0020892.1 mouse_genomes_project 13 45611720 46067661 - MGP_C57BL6NJ_P0037302 Atxn1 protein_coding protein_coding MGP_C57BL6NJ_T0038610.1 MGP_C57BL6NJ_G0021328.1 mouse_genomes_project 13 118943682 118985013 + MGP_C57BL6NJ_P0038610 Dhx29 protein_coding protein_coding MGP_C57BL6NJ_T0037157.1 MGP_C57BL6NJ_G0020838.1 mouse_genomes_project 13 34188956 34300128 + MGP_C57BL6NJ_P0037157 4933417A18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037158.1 MGP_C57BL6NJ_G0020838.1 mouse_genomes_project 13 34188956 34297450 + MGP_C57BL6NJ_P0037158 4933417A18Rik protein_coding protein_coding MGP_C57BL6NJ_T0037776.1 MGP_C57BL6NJ_G0021037.1 mouse_genomes_project 13 62481032 62483117 - MGP_C57BL6NJ_P0037776 Ctla2b protein_coding protein_coding MGP_C57BL6NJ_T0037777.1 MGP_C57BL6NJ_G0021037.1 mouse_genomes_project 13 62481032 62483117 - MGP_C57BL6NJ_P0037777 Ctla2b protein_coding protein_coding MGP_C57BL6NJ_T0037554.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56091504 56122490 - MGP_C57BL6NJ_P0037554 Hk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037555.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56091580 56122098 - MGP_C57BL6NJ_P0037555 Hk3 protein_coding protein_coding MGP_C57BL6NJ_T0037556.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56091683 56120617 - MGP_C57BL6NJ_P0037556 Hk3 protein_coding protein_coding MGP_C57BL6NJ_T0037557.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56116232 56122491 - MGP_C57BL6NJ_P0037557 Hk3 protein_coding protein_coding MGP_C57BL6NJ_T0037558.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56116282 56122516 - MGP_C57BL6NJ_P0037558 Hk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037559.1 MGP_C57BL6NJ_G0020967.1 mouse_genomes_project 13 56116970 56122411 - MGP_C57BL6NJ_P0037559 Hk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013234.1 MGP_C57BL6NJ_G0011279.1 mouse_genomes_project 13 55551432 55551817 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101202.1 MGP_C57BL6NJ_G0039248.1 mouse_genomes_project 13 112498596 112498662 - Gm24431 snoRNA snoRNA MGP_C57BL6NJ_T0038625.1 MGP_C57BL6NJ_G0021337.1 mouse_genomes_project 13 119336381 119429835 + MGP_C57BL6NJ_P0038625 BC067074 protein_coding protein_coding MGP_C57BL6NJ_T0038626.1 MGP_C57BL6NJ_G0021337.1 mouse_genomes_project 13 119393330 119430833 + MGP_C57BL6NJ_P0038626 BC067074 protein_coding protein_coding MGP_C57BL6NJ_T0038627.1 MGP_C57BL6NJ_G0021337.1 mouse_genomes_project 13 119407989 119440791 + MGP_C57BL6NJ_P0038627 BC067074 protein_coding protein_coding MGP_C57BL6NJ_T0038596.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118447104 118467566 + MGP_C57BL6NJ_P0038596 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0038597.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118447132 118488325 + MGP_C57BL6NJ_P0038597 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0038598.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118447233 118488425 + MGP_C57BL6NJ_P0038598 Il6st protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038599.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118450574 118462999 + MGP_C57BL6NJ_P0038599 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0038600.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118458021 118488325 + MGP_C57BL6NJ_P0038600 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0038601.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118458021 118487639 + MGP_C57BL6NJ_P0038601 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0038602.1 MGP_C57BL6NJ_G0021322.1 mouse_genomes_project 13 118458021 118487639 + MGP_C57BL6NJ_P0038602 Il6st protein_coding protein_coding MGP_C57BL6NJ_T0036980.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22854576 23020321 + MGP_C57BL6NJ_P0036980 Fam65b protein_coding protein_coding MGP_C57BL6NJ_T0036981.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22888609 22984446 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036982.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22888609 22988285 + MGP_C57BL6NJ_P0036982 Fam65b protein_coding protein_coding MGP_C57BL6NJ_T0036983.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22888626 22988181 + MGP_C57BL6NJ_P0036983 Fam65b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036984.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22912635 23020321 + MGP_C57BL6NJ_P0036984 Fam65b protein_coding protein_coding MGP_C57BL6NJ_T0036985.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22912637 22949613 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036986.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22912671 22979784 + MGP_C57BL6NJ_P0036986 Fam65b protein_coding protein_coding MGP_C57BL6NJ_T0036987.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22912683 22988285 + MGP_C57BL6NJ_P0036987 Fam65b protein_coding protein_coding MGP_C57BL6NJ_T0036988.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22912700 22978009 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036989.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22950546 22955611 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036990.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22953063 22955607 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036991.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22966020 22976343 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0036992.1 MGP_C57BL6NJ_G0020762.1 mouse_genomes_project 13 22992346 23001034 + Fam65b protein_coding retained_intron MGP_C57BL6NJ_T0037446.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53748318 53849996 - MGP_C57BL6NJ_P0037446 Auh protein_coding protein_coding MGP_C57BL6NJ_T0037447.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53748318 53839565 - MGP_C57BL6NJ_P0037447 Auh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037448.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53754068 53849793 - MGP_C57BL6NJ_P0037448 Auh protein_coding protein_coding MGP_C57BL6NJ_T0037449.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53802023 53849983 - Auh protein_coding retained_intron MGP_C57BL6NJ_T0037450.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53811341 53849987 - MGP_C57BL6NJ_P0037450 Auh protein_coding protein_coding MGP_C57BL6NJ_T0037451.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53812117 53844200 - Auh protein_coding processed_transcript MGP_C57BL6NJ_T0037452.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53824053 53849989 - MGP_C57BL6NJ_P0037452 Auh protein_coding protein_coding MGP_C57BL6NJ_T0037453.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53825903 53844179 - Auh protein_coding processed_transcript MGP_C57BL6NJ_T0037454.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53825914 53839601 - Auh protein_coding processed_transcript MGP_C57BL6NJ_T0037455.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53827218 53850016 - MGP_C57BL6NJ_P0037455 Auh protein_coding protein_coding MGP_C57BL6NJ_T0037456.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53831791 53844203 - Auh protein_coding processed_transcript MGP_C57BL6NJ_T0037457.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53839106 53844195 - Auh protein_coding retained_intron MGP_C57BL6NJ_T0037458.1 MGP_C57BL6NJ_G0020942.1 mouse_genomes_project 13 53848823 53849987 - Auh protein_coding processed_transcript MGP_C57BL6NJ_T0037026.1 MGP_C57BL6NJ_G0020778.1 mouse_genomes_project 13 25681974 25688942 + MGP_C57BL6NJ_P0037026 Prl3c1 protein_coding protein_coding MGP_C57BL6NJ_T0037027.1 MGP_C57BL6NJ_G0020778.1 mouse_genomes_project 13 25684095 25688942 + MGP_C57BL6NJ_P0037027 Prl3c1 protein_coding protein_coding MGP_C57BL6NJ_T0037028.1 MGP_C57BL6NJ_G0020778.1 mouse_genomes_project 13 25684545 25688805 + MGP_C57BL6NJ_P0037028 Prl3c1 protein_coding protein_coding MGP_C57BL6NJ_T0099340.1 MGP_C57BL6NJ_G0037400.1 mouse_genomes_project 13 95500143 95500596 - Gm29540 sense_intronic sense_intronic MGP_C57BL6NJ_T0010145.1 MGP_C57BL6NJ_G0008230.1 mouse_genomes_project 13 62086296 62086410 - Gm25000 miRNA miRNA MGP_C57BL6NJ_T0036770.1 MGP_C57BL6NJ_G0020638.1 mouse_genomes_project 13 15473662 15477307 + MGP_C57BL6NJ_P0036770 Mplkip protein_coding protein_coding MGP_C57BL6NJ_T0099879.1 MGP_C57BL6NJ_G0037925.1 mouse_genomes_project 13 41694013 41694117 + Gm22157 snRNA snRNA MGP_C57BL6NJ_T0038043.1 MGP_C57BL6NJ_G0021165.1 mouse_genomes_project 13 79178482 79180628 - MGP_C57BL6NJ_P0038043 Gpr150 protein_coding protein_coding MGP_C57BL6NJ_T0038603.1 MGP_C57BL6NJ_G0021323.1 mouse_genomes_project 13 118508090 118567967 - MGP_C57BL6NJ_P0038603 Il31ra protein_coding protein_coding MGP_C57BL6NJ_T0037398.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51071018 51087158 + MGP_C57BL6NJ_P0037398 Fbxw17 protein_coding protein_coding MGP_C57BL6NJ_T0037399.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51071035 51078811 + MGP_C57BL6NJ_P0037399 Fbxw17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037400.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51071040 51083526 + Fbxw17 protein_coding processed_transcript MGP_C57BL6NJ_T0037401.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51071040 51087169 + MGP_C57BL6NJ_P0037401 Fbxw17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037402.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51071049 51073434 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037403.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51077009 51080445 + Fbxw17 protein_coding processed_transcript MGP_C57BL6NJ_T0037404.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51083238 51085499 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037405.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51084509 51087165 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037406.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51084559 51085765 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037407.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51084745 51085628 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037408.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51085064 51085742 + Fbxw17 protein_coding retained_intron MGP_C57BL6NJ_T0037409.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51085099 51087158 + MGP_C57BL6NJ_P0037409 Fbxw17 protein_coding protein_coding MGP_C57BL6NJ_T0037410.1 MGP_C57BL6NJ_G0020928.1 mouse_genomes_project 13 51085573 51087152 + MGP_C57BL6NJ_P0037410 Fbxw17 protein_coding protein_coding MGP_C57BL6NJ_T0036763.1 MGP_C57BL6NJ_G0020635.1 mouse_genomes_project 13 13131891 13397138 + MGP_C57BL6NJ_P0036763 Gli3 protein_coding protein_coding MGP_C57BL6NJ_T0036764.1 MGP_C57BL6NJ_G0020635.1 mouse_genomes_project 13 13131907 13319123 + Gli3 protein_coding processed_transcript MGP_C57BL6NJ_T0036765.1 MGP_C57BL6NJ_G0020635.1 mouse_genomes_project 13 13132379 13342214 + Gli3 protein_coding retained_intron MGP_C57BL6NJ_T0036766.1 MGP_C57BL6NJ_G0020635.1 mouse_genomes_project 13 13132636 13412091 + MGP_C57BL6NJ_P0036766 Gli3 protein_coding protein_coding MGP_C57BL6NJ_T0013238.1 MGP_C57BL6NJ_G0011283.1 mouse_genomes_project 13 63419216 63419965 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003587.1 MGP_C57BL6NJ_G0003278.1 mouse_genomes_project 13 20563436 20564270 - antisense antisense MGP_C57BL6NJ_T0099883.1 MGP_C57BL6NJ_G0037929.1 mouse_genomes_project 13 45544146 45544253 - Gm23387 snRNA snRNA MGP_C57BL6NJ_T0099864.1 MGP_C57BL6NJ_G0037910.1 mouse_genomes_project 13 12244622 12244735 - Gm25444 snRNA snRNA MGP_C57BL6NJ_T0013221.1 MGP_C57BL6NJ_G0011266.1 mouse_genomes_project 13 29012408 29012837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003644.1 MGP_C57BL6NJ_G0003312.1 mouse_genomes_project 13 97878189 97881821 + Gm15622 antisense antisense MGP_C57BL6NJ_T0017827.1 MGP_C57BL6NJ_G0015651.1 mouse_genomes_project 13 72284823 72289227 - Gm17108 processed_transcript processed_transcript MGP_C57BL6NJ_T0013195.1 MGP_C57BL6NJ_G0011240.1 mouse_genomes_project 13 20200400 20202322 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037592.1 MGP_C57BL6NJ_G0020979.1 mouse_genomes_project 13 56546731 56547145 - MGP_C57BL6NJ_P0037592 Pfn3 protein_coding protein_coding MGP_C57BL6NJ_T0006731.1 MGP_C57BL6NJ_G0005583.1 mouse_genomes_project 13 48874148 48876448 - 6720427I07Rik lincRNA lincRNA MGP_C57BL6NJ_T0010140.1 MGP_C57BL6NJ_G0008225.1 mouse_genomes_project 13 56653279 56653347 - Mir6945 miRNA miRNA MGP_C57BL6NJ_T0038685.1 MGP_C57BL6NJ_G0021365.1 mouse_genomes_project 13 126454160 126456397 - MGP_C57BL6NJ_P0038685 AF067063 protein_coding protein_coding MGP_C57BL6NJ_T0038686.1 MGP_C57BL6NJ_G0021365.1 mouse_genomes_project 13 126454288 126454878 - MGP_C57BL6NJ_P0038686 AF067063 protein_coding protein_coding MGP_C57BL6NJ_T0102830.1 MGP_C57BL6NJ_G0040624.1 mouse_genomes_project 13 32896090 32896889 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0098822.1 MGP_C57BL6NJ_G0036886.1 mouse_genomes_project 13 95342294 95342721 + pseudogene pseudogene MGP_C57BL6NJ_T0098818.1 MGP_C57BL6NJ_G0036882.1 mouse_genomes_project 13 19436346 19436824 - pseudogene pseudogene MGP_C57BL6NJ_T0037904.1 MGP_C57BL6NJ_G0021097.1 mouse_genomes_project 13 69937393 69943723 - MGP_C57BL6NJ_P0037904 protein_coding protein_coding MGP_C57BL6NJ_T0003643.1 MGP_C57BL6NJ_G0003311.1 mouse_genomes_project 13 96568260 96580416 - C030017D09Rik antisense antisense MGP_C57BL6NJ_T0038173.1 MGP_C57BL6NJ_G0021190.1 mouse_genomes_project 13 94672750 94673116 + MGP_C57BL6NJ_P0038173 Gm21726 protein_coding protein_coding MGP_C57BL6NJ_T0006715.1 MGP_C57BL6NJ_G0005571.1 mouse_genomes_project 13 36967058 36971217 + Gm29590 lincRNA lincRNA MGP_C57BL6NJ_T0037963.1 MGP_C57BL6NJ_G0021129.1 mouse_genomes_project 13 74773037 74779957 - MGP_C57BL6NJ_P0037963 Irx1 protein_coding protein_coding MGP_C57BL6NJ_T0037636.1 MGP_C57BL6NJ_G0020994.1 mouse_genomes_project 13 56887671 56947336 + MGP_C57BL6NJ_P0037636 Pcbd2 protein_coding protein_coding MGP_C57BL6NJ_T0037637.1 MGP_C57BL6NJ_G0020994.1 mouse_genomes_project 13 56887671 56947334 + MGP_C57BL6NJ_P0037637 Pcbd2 protein_coding protein_coding MGP_C57BL6NJ_T0006723.1 MGP_C57BL6NJ_G0005578.1 mouse_genomes_project 13 44403586 44424119 + 1700029N11Rik lincRNA lincRNA MGP_C57BL6NJ_T0006724.1 MGP_C57BL6NJ_G0005578.1 mouse_genomes_project 13 44403601 44424122 + 1700029N11Rik lincRNA lincRNA MGP_C57BL6NJ_T0038225.1 MGP_C57BL6NJ_G0021204.1 mouse_genomes_project 13 96645562 96694551 - MGP_C57BL6NJ_P0038225 Zfyve16 protein_coding protein_coding MGP_C57BL6NJ_T0038226.1 MGP_C57BL6NJ_G0021204.1 mouse_genomes_project 13 96646301 96678041 - Zfyve16 protein_coding retained_intron MGP_C57BL6NJ_T0038227.1 MGP_C57BL6NJ_G0021204.1 mouse_genomes_project 13 96669249 96670563 - Zfyve16 protein_coding retained_intron MGP_C57BL6NJ_T0038228.1 MGP_C57BL6NJ_G0021204.1 mouse_genomes_project 13 96674753 96683877 - Zfyve16 protein_coding processed_transcript MGP_C57BL6NJ_T0038035.1 MGP_C57BL6NJ_G0021161.1 mouse_genomes_project 13 78953671 78965235 + MGP_C57BL6NJ_P0038035 Glrx protein_coding protein_coding MGP_C57BL6NJ_T0037981.1 MGP_C57BL6NJ_G0021136.1 mouse_genomes_project 13 76462092 76505123 + MGP_C57BL6NJ_P0037981 Slc6a3 protein_coding protein_coding MGP_C57BL6NJ_T0037869.1 MGP_C57BL6NJ_G0021080.1 mouse_genomes_project 13 69352854 69359378 + MGP_C57BL6NJ_P0037869 protein_coding protein_coding MGP_C57BL6NJ_T0037870.1 MGP_C57BL6NJ_G0021080.1 mouse_genomes_project 13 69353355 69359308 + MGP_C57BL6NJ_P0037870 protein_coding protein_coding MGP_C57BL6NJ_T0037008.1 MGP_C57BL6NJ_G0020768.1 mouse_genomes_project 13 23207814 23239571 - MGP_C57BL6NJ_P0037008 Aldh5a1 protein_coding protein_coding MGP_C57BL6NJ_T0037012.1 MGP_C57BL6NJ_G0020770.1 mouse_genomes_project 13 23294399 23321573 - MGP_C57BL6NJ_P0037012 Mrs2 protein_coding protein_coding MGP_C57BL6NJ_T0037326.1 MGP_C57BL6NJ_G0020902.1 mouse_genomes_project 13 47234562 47244723 + MGP_C57BL6NJ_P0037326 Kdm1b protein_coding protein_coding MGP_C57BL6NJ_T0037327.1 MGP_C57BL6NJ_G0020902.1 mouse_genomes_project 13 47234865 47277698 + MGP_C57BL6NJ_P0037327 Kdm1b protein_coding protein_coding MGP_C57BL6NJ_T0037328.1 MGP_C57BL6NJ_G0020902.1 mouse_genomes_project 13 47255606 47265373 + Kdm1b protein_coding retained_intron MGP_C57BL6NJ_T0037329.1 MGP_C57BL6NJ_G0020902.1 mouse_genomes_project 13 47257926 47277703 + Kdm1b protein_coding processed_transcript MGP_C57BL6NJ_T0038235.1 MGP_C57BL6NJ_G0021210.1 mouse_genomes_project 13 97363499 97409672 - MGP_C57BL6NJ_P0038235 Papd4 protein_coding protein_coding MGP_C57BL6NJ_T0038000.1 MGP_C57BL6NJ_G0021145.1 mouse_genomes_project 13 76916776 76958933 + MGP_C57BL6NJ_P0038000 Zdhhc11 protein_coding protein_coding MGP_C57BL6NJ_T0037230.1 MGP_C57BL6NJ_G0020866.1 mouse_genomes_project 13 40760469 40816277 - MGP_C57BL6NJ_P0037230 Mak protein_coding protein_coding MGP_C57BL6NJ_T0037231.1 MGP_C57BL6NJ_G0020866.1 mouse_genomes_project 13 40760469 40805146 - MGP_C57BL6NJ_P0037231 Mak protein_coding protein_coding MGP_C57BL6NJ_T0037232.1 MGP_C57BL6NJ_G0020866.1 mouse_genomes_project 13 40760469 40816277 - MGP_C57BL6NJ_P0037232 Mak protein_coding protein_coding MGP_C57BL6NJ_T0006746.1 MGP_C57BL6NJ_G0005591.1 mouse_genomes_project 13 56009202 56012696 - 4930526F13Rik lincRNA lincRNA MGP_C57BL6NJ_T0036802.1 MGP_C57BL6NJ_G0020651.1 mouse_genomes_project 13 17941504 18122643 + Elmo1 protein_coding retained_intron MGP_C57BL6NJ_T0036803.1 MGP_C57BL6NJ_G0020651.1 mouse_genomes_project 13 17941527 18490824 + MGP_C57BL6NJ_P0036803 Elmo1 protein_coding protein_coding MGP_C57BL6NJ_T0036804.1 MGP_C57BL6NJ_G0020651.1 mouse_genomes_project 13 17963560 18207072 + Elmo1 protein_coding retained_intron MGP_C57BL6NJ_T0036805.1 MGP_C57BL6NJ_G0020651.1 mouse_genomes_project 13 18342550 18475319 + Elmo1 protein_coding retained_intron MGP_C57BL6NJ_T0010171.1 MGP_C57BL6NJ_G0008256.1 mouse_genomes_project 13 119065879 119065959 + Mir449b miRNA miRNA MGP_C57BL6NJ_T0098998.1 MGP_C57BL6NJ_G0037062.1 mouse_genomes_project 13 53888431 53888543 - n-R5s54 rRNA rRNA MGP_C57BL6NJ_T0038329.1 MGP_C57BL6NJ_G0021243.1 mouse_genomes_project 13 101703403 101712605 - MGP_C57BL6NJ_P0038329 Nsa2 protein_coding protein_coding MGP_C57BL6NJ_T0038330.1 MGP_C57BL6NJ_G0021243.1 mouse_genomes_project 13 101705137 101712570 - MGP_C57BL6NJ_P0038330 Nsa2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036895.1 MGP_C57BL6NJ_G0020711.1 mouse_genomes_project 13 20622810 20623761 - MGP_C57BL6NJ_P0036895 Vmn1r205 protein_coding protein_coding MGP_C57BL6NJ_T0036634.1 MGP_C57BL6NJ_G0020599.1 mouse_genomes_project 13 3138598 3141753 + MGP_C57BL6NJ_P0036634 Gm28465 protein_coding protein_coding MGP_C57BL6NJ_T0003615.1 MGP_C57BL6NJ_G0003299.1 mouse_genomes_project 13 66333126 66354051 + 1810034E14Rik antisense antisense MGP_C57BL6NJ_T0003616.1 MGP_C57BL6NJ_G0003299.1 mouse_genomes_project 13 66333198 66352377 + 1810034E14Rik antisense antisense MGP_C57BL6NJ_T0003617.1 MGP_C57BL6NJ_G0003299.1 mouse_genomes_project 13 66352379 66354051 + 1810034E14Rik antisense antisense MGP_C57BL6NJ_T0037464.1 MGP_C57BL6NJ_G0020946.1 mouse_genomes_project 13 54422863 54430603 - MGP_C57BL6NJ_P0037464 Msx2 protein_coding protein_coding MGP_C57BL6NJ_T0037465.1 MGP_C57BL6NJ_G0020946.1 mouse_genomes_project 13 54429034 54430603 - Msx2 protein_coding retained_intron MGP_C57BL6NJ_T0036595.1 MGP_C57BL6NJ_G0020580.1 mouse_genomes_project 13 108418 158779 - MGP_C57BL6NJ_P0036595 Fam208b protein_coding protein_coding MGP_C57BL6NJ_T0102415.1 MGP_C57BL6NJ_G0040332.1 mouse_genomes_project 13 21834747 21835067 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0037188.1 MGP_C57BL6NJ_G0020848.1 mouse_genomes_project 13 36783915 36867090 + MGP_C57BL6NJ_P0037188 Ly86 protein_coding protein_coding MGP_C57BL6NJ_T0037079.1 MGP_C57BL6NJ_G0020803.1 mouse_genomes_project 13 29684616 29825314 - MGP_C57BL6NJ_P0037079 Exoc2 protein_coding protein_coding MGP_C57BL6NJ_T0037080.1 MGP_C57BL6NJ_G0020803.1 mouse_genomes_project 13 29684616 29850348 - MGP_C57BL6NJ_P0037080 Exoc2 protein_coding protein_coding MGP_C57BL6NJ_T0038609.1 MGP_C57BL6NJ_G0021327.1 mouse_genomes_project 13 118880528 118943333 - MGP_C57BL6NJ_P0038609 Skiv2l2 protein_coding protein_coding MGP_C57BL6NJ_T0013242.1 MGP_C57BL6NJ_G0011287.1 mouse_genomes_project 13 70014416 70015117 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013225.1 MGP_C57BL6NJ_G0011270.1 mouse_genomes_project 13 30095238 30095808 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038293.1 MGP_C57BL6NJ_G0021228.1 mouse_genomes_project 13 99892357 99893712 - MGP_C57BL6NJ_P0038293 S100z protein_coding protein_coding MGP_C57BL6NJ_T0038499.1 MGP_C57BL6NJ_G0021295.1 mouse_genomes_project 13 110123685 110174313 + Srek1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0038501.1 MGP_C57BL6NJ_G0021295.1 mouse_genomes_project 13 110151004 110175227 + MGP_C57BL6NJ_P0038501 Srek1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0038502.1 MGP_C57BL6NJ_G0021295.1 mouse_genomes_project 13 110151066 110174622 + MGP_C57BL6NJ_P0038502 Srek1ip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038503.1 MGP_C57BL6NJ_G0021295.1 mouse_genomes_project 13 110162552 110170222 + Srek1ip1 protein_coding retained_intron MGP_C57BL6NJ_T0038504.1 MGP_C57BL6NJ_G0021295.1 mouse_genomes_project 13 110169998 110175224 + Srek1ip1 protein_coding retained_intron MGP_C57BL6NJ_T0037785.1 MGP_C57BL6NJ_G0021044.1 mouse_genomes_project 13 62830675 62838954 - MGP_C57BL6NJ_P0037785 Cts6 protein_coding protein_coding MGP_C57BL6NJ_T0102809.1 MGP_C57BL6NJ_G0040603.1 mouse_genomes_project 13 20981588 20982462 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099862.1 MGP_C57BL6NJ_G0037908.1 mouse_genomes_project 13 10698503 10698603 - Gm22476 snRNA snRNA MGP_C57BL6NJ_T0013215.1 MGP_C57BL6NJ_G0011260.1 mouse_genomes_project 13 25800689 25801030 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001013.1 MGP_C57BL6NJ_G0000922.1 mouse_genomes_project 13 65605848 65606796 - TEC TEC MGP_C57BL6NJ_T0006708.1 MGP_C57BL6NJ_G0005567.1 mouse_genomes_project 13 34251673 34304400 + lincRNA lincRNA MGP_C57BL6NJ_T0006709.1 MGP_C57BL6NJ_G0005567.1 mouse_genomes_project 13 34251696 34270899 + lincRNA lincRNA MGP_C57BL6NJ_T0006710.1 MGP_C57BL6NJ_G0005567.1 mouse_genomes_project 13 34251749 34304091 + lincRNA lincRNA MGP_C57BL6NJ_T0002629.1 MGP_C57BL6NJ_G0002516.1 mouse_genomes_project 13 17152519 17161922 + MGP_C57BL6NJ_P0002629 Tcrg-C4 TR_C_gene TR_C_gene MGP_C57BL6NJ_T0037218.1 MGP_C57BL6NJ_G0020861.1 mouse_genomes_project 13 40409642 40415093 + MGP_C57BL6NJ_P0037218 Gm9979 protein_coding protein_coding MGP_C57BL6NJ_T0101199.1 MGP_C57BL6NJ_G0039245.1 mouse_genomes_project 13 99733207 99733339 + Gm22661 snoRNA snoRNA MGP_C57BL6NJ_T0010147.1 MGP_C57BL6NJ_G0008232.1 mouse_genomes_project 13 63515579 63515686 - Gm22256 miRNA miRNA MGP_C57BL6NJ_T0036962.1 MGP_C57BL6NJ_G0020759.1 mouse_genomes_project 13 22186751 22224425 - MGP_C57BL6NJ_P0036962 Scgn protein_coding protein_coding MGP_C57BL6NJ_T0036963.1 MGP_C57BL6NJ_G0020759.1 mouse_genomes_project 13 22195411 22200464 - Scgn protein_coding processed_transcript MGP_C57BL6NJ_T0037071.1 MGP_C57BL6NJ_G0020799.1 mouse_genomes_project 13 29177969 29187368 + Agtr1a protein_coding processed_transcript MGP_C57BL6NJ_T0037072.1 MGP_C57BL6NJ_G0020799.1 mouse_genomes_project 13 29177969 29226900 + MGP_C57BL6NJ_P0037072 Agtr1a protein_coding protein_coding MGP_C57BL6NJ_T0006733.1 MGP_C57BL6NJ_G0005585.1 mouse_genomes_project 13 52794945 52800624 + lincRNA lincRNA MGP_C57BL6NJ_T0011609.1 MGP_C57BL6NJ_G0009694.1 mouse_genomes_project 13 33460839 33461127 - Gm24530 misc_RNA misc_RNA MGP_C57BL6NJ_T0099884.1 MGP_C57BL6NJ_G0037930.1 mouse_genomes_project 13 47081979 47082083 + Gm22960 snRNA snRNA MGP_C57BL6NJ_T0099891.1 MGP_C57BL6NJ_G0037937.1 mouse_genomes_project 13 100345694 100345853 - Gm24032 snRNA snRNA MGP_C57BL6NJ_T0037424.1 MGP_C57BL6NJ_G0020937.1 mouse_genomes_project 13 52476838 52495099 - MGP_C57BL6NJ_P0037424 Gm15440 protein_coding protein_coding MGP_C57BL6NJ_T0038587.1 MGP_C57BL6NJ_G0021320.1 mouse_genomes_project 13 117672765 117740756 - MGP_C57BL6NJ_P0038587 Map3k1 protein_coding protein_coding MGP_C57BL6NJ_T0038588.1 MGP_C57BL6NJ_G0021320.1 mouse_genomes_project 13 117677202 117679783 - Map3k1 protein_coding retained_intron MGP_C57BL6NJ_T0038589.1 MGP_C57BL6NJ_G0021320.1 mouse_genomes_project 13 117681958 117683095 - Map3k1 protein_coding retained_intron MGP_C57BL6NJ_T0038590.1 MGP_C57BL6NJ_G0021320.1 mouse_genomes_project 13 117695999 117696944 - Map3k1 protein_coding processed_transcript MGP_C57BL6NJ_T0038591.1 MGP_C57BL6NJ_G0021320.1 mouse_genomes_project 13 117696374 117740157 - MGP_C57BL6NJ_P0038591 Map3k1 protein_coding protein_coding MGP_C57BL6NJ_T0013202.1 MGP_C57BL6NJ_G0011247.1 mouse_genomes_project 13 21535149 21535305 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013254.1 MGP_C57BL6NJ_G0011299.1 mouse_genomes_project 13 81566231 81566588 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006725.1 MGP_C57BL6NJ_G0005579.1 mouse_genomes_project 13 46067922 46069178 + 5033430I15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006726.1 MGP_C57BL6NJ_G0005579.1 mouse_genomes_project 13 46068020 46068847 + 5033430I15Rik lincRNA lincRNA MGP_C57BL6NJ_T0037902.1 MGP_C57BL6NJ_G0021095.1 mouse_genomes_project 13 69869950 69909907 - MGP_C57BL6NJ_P0037902 Gm28041 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001017.1 MGP_C57BL6NJ_G0000926.1 mouse_genomes_project 13 82570863 82571325 - TEC TEC MGP_C57BL6NJ_T0036904.1 MGP_C57BL6NJ_G0020720.1 mouse_genomes_project 13 21195913 21196810 + MGP_C57BL6NJ_P0036904 Vmn1r216 protein_coding protein_coding MGP_C57BL6NJ_T0038254.1 MGP_C57BL6NJ_G0021216.1 mouse_genomes_project 13 98046618 98239445 + MGP_C57BL6NJ_P0038254 Arsb protein_coding protein_coding MGP_C57BL6NJ_T0036837.1 MGP_C57BL6NJ_G0020668.1 mouse_genomes_project 13 19448623 19466498 - MGP_C57BL6NJ_P0036837 Zkscan8 protein_coding protein_coding MGP_C57BL6NJ_T0036838.1 MGP_C57BL6NJ_G0020668.1 mouse_genomes_project 13 19457232 19466410 - MGP_C57BL6NJ_P0036838 Zkscan8 protein_coding protein_coding MGP_C57BL6NJ_T0036839.1 MGP_C57BL6NJ_G0020668.1 mouse_genomes_project 13 19461824 19466451 - MGP_C57BL6NJ_P0036839 Zkscan8 protein_coding protein_coding MGP_C57BL6NJ_T0036890.1 MGP_C57BL6NJ_G0020706.1 mouse_genomes_project 13 20427813 20428752 + MGP_C57BL6NJ_P0036890 Vmn1r200 protein_coding protein_coding MGP_C57BL6NJ_T0010169.1 MGP_C57BL6NJ_G0008254.1 mouse_genomes_project 13 115661755 115661835 + Mir1904 miRNA miRNA MGP_C57BL6NJ_T0036872.1 MGP_C57BL6NJ_G0020691.1 mouse_genomes_project 13 20002613 20010179 - MGP_C57BL6NJ_P0036872 Prss16 protein_coding protein_coding MGP_C57BL6NJ_T0036873.1 MGP_C57BL6NJ_G0020691.1 mouse_genomes_project 13 20002997 20005660 - Prss16 protein_coding processed_transcript MGP_C57BL6NJ_T0036874.1 MGP_C57BL6NJ_G0020691.1 mouse_genomes_project 13 20003363 20006853 - Prss16 protein_coding processed_transcript MGP_C57BL6NJ_T0036875.1 MGP_C57BL6NJ_G0020691.1 mouse_genomes_project 13 20007669 20010180 - Prss16 protein_coding processed_transcript MGP_C57BL6NJ_T0037843.1 MGP_C57BL6NJ_G0021064.1 mouse_genomes_project 13 66275122 66360769 - MGP_C57BL6NJ_P0037843 Cdc14b protein_coding protein_coding MGP_C57BL6NJ_T0037844.1 MGP_C57BL6NJ_G0021064.1 mouse_genomes_project 13 66275122 66332953 - MGP_C57BL6NJ_P0037844 Cdc14b protein_coding protein_coding MGP_C57BL6NJ_T0037845.1 MGP_C57BL6NJ_G0021064.1 mouse_genomes_project 13 66278961 66360675 - MGP_C57BL6NJ_P0037845 Cdc14b protein_coding protein_coding MGP_C57BL6NJ_T0037846.1 MGP_C57BL6NJ_G0021064.1 mouse_genomes_project 13 66280240 66332880 - MGP_C57BL6NJ_P0037846 Cdc14b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0006801.1 MGP_C57BL6NJ_G0005628.1 mouse_genomes_project 13 106681153 106681769 - Gm29341 lincRNA lincRNA MGP_C57BL6NJ_T0013212.1 MGP_C57BL6NJ_G0011257.1 mouse_genomes_project 13 24573972 24574489 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037144.1 MGP_C57BL6NJ_G0020832.1 mouse_genomes_project 13 33351605 33360106 + MGP_C57BL6NJ_P0037144 Psmg4 protein_coding protein_coding MGP_C57BL6NJ_T0037145.1 MGP_C57BL6NJ_G0020832.1 mouse_genomes_project 13 33351605 33360110 + MGP_C57BL6NJ_P0037145 Psmg4 protein_coding protein_coding MGP_C57BL6NJ_T0037501.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55685977 55733813 + MGP_C57BL6NJ_P0037501 Faf2 protein_coding protein_coding MGP_C57BL6NJ_T0037502.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55685997 55709210 + MGP_C57BL6NJ_P0037502 Faf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037503.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55686017 55731331 + MGP_C57BL6NJ_P0037503 Faf2 protein_coding protein_coding MGP_C57BL6NJ_T0037504.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55686028 55716098 + MGP_C57BL6NJ_P0037504 Faf2 protein_coding protein_coding MGP_C57BL6NJ_T0037505.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55686028 55715987 + MGP_C57BL6NJ_P0037505 Faf2 protein_coding protein_coding MGP_C57BL6NJ_T0037506.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55686031 55724029 + MGP_C57BL6NJ_P0037506 Faf2 protein_coding protein_coding MGP_C57BL6NJ_T0037507.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55709212 55723191 + MGP_C57BL6NJ_P0037507 Faf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037508.1 MGP_C57BL6NJ_G0020959.1 mouse_genomes_project 13 55719110 55723216 + Faf2 protein_coding retained_intron MGP_C57BL6NJ_T0101163.1 MGP_C57BL6NJ_G0039209.1 mouse_genomes_project 13 5862519 5862652 + snoRNA snoRNA MGP_C57BL6NJ_T0037861.1 MGP_C57BL6NJ_G0021076.1 mouse_genomes_project 13 67325136 67354757 - MGP_C57BL6NJ_P0037861 Nlrp4f protein_coding protein_coding MGP_C57BL6NJ_T0006681.1 MGP_C57BL6NJ_G0005548.1 mouse_genomes_project 13 22617727 22626902 - Gm11345 lincRNA lincRNA MGP_C57BL6NJ_T0037396.1 MGP_C57BL6NJ_G0020926.1 mouse_genomes_project 13 50409526 50415005 - MGP_C57BL6NJ_P0037396 Gm8674 protein_coding protein_coding MGP_C57BL6NJ_T0006767.1 MGP_C57BL6NJ_G0005605.1 mouse_genomes_project 13 83259921 83456136 - lincRNA lincRNA MGP_C57BL6NJ_T0001030.1 MGP_C57BL6NJ_G0000939.1 mouse_genomes_project 13 106833772 106834172 - TEC TEC MGP_C57BL6NJ_T0011619.1 MGP_C57BL6NJ_G0009704.1 mouse_genomes_project 13 95891645 95891945 - Gm24597 misc_RNA misc_RNA MGP_C57BL6NJ_T0101190.1 MGP_C57BL6NJ_G0039236.1 mouse_genomes_project 13 79080819 79080950 - Gm23319 snoRNA snoRNA MGP_C57BL6NJ_T0038389.1 MGP_C57BL6NJ_G0021266.1 mouse_genomes_project 13 104970597 104976600 + MGP_C57BL6NJ_P0038389 Serf1 protein_coding protein_coding MGP_C57BL6NJ_T0038390.1 MGP_C57BL6NJ_G0021266.1 mouse_genomes_project 13 104970670 104973373 + MGP_C57BL6NJ_P0038390 Serf1 protein_coding protein_coding MGP_C57BL6NJ_T0038391.1 MGP_C57BL6NJ_G0021266.1 mouse_genomes_project 13 104970740 104976933 + MGP_C57BL6NJ_P0038391 Serf1 protein_coding protein_coding MGP_C57BL6NJ_T0038392.1 MGP_C57BL6NJ_G0021266.1 mouse_genomes_project 13 104970926 104976600 + MGP_C57BL6NJ_P0038392 Serf1 protein_coding protein_coding MGP_C57BL6NJ_T0038393.1 MGP_C57BL6NJ_G0021266.1 mouse_genomes_project 13 104970981 104976593 + MGP_C57BL6NJ_P0038393 Serf1 protein_coding protein_coding MGP_C57BL6NJ_T0037099.1 MGP_C57BL6NJ_G0020815.1 mouse_genomes_project 13 31920839 31930986 - MGP_C57BL6NJ_P0037099 Serpinb1c protein_coding protein_coding MGP_C57BL6NJ_T0037100.1 MGP_C57BL6NJ_G0020815.1 mouse_genomes_project 13 31923013 31930963 - MGP_C57BL6NJ_P0037100 Serpinb1c protein_coding protein_coding MGP_C57BL6NJ_T0036836.1 MGP_C57BL6NJ_G0020667.1 mouse_genomes_project 13 19436422 19436812 - MGP_C57BL6NJ_P0036836 Gm11273 protein_coding protein_coding MGP_C57BL6NJ_T0001015.1 MGP_C57BL6NJ_G0000924.1 mouse_genomes_project 13 71657525 71659092 + TEC TEC MGP_C57BL6NJ_T0001011.1 MGP_C57BL6NJ_G0000920.1 mouse_genomes_project 13 48881269 48883659 - TEC TEC MGP_C57BL6NJ_T0038507.1 MGP_C57BL6NJ_G0021298.1 mouse_genomes_project 13 110438480 110487531 + MGP_C57BL6NJ_P0038507 4933425L06Rik protein_coding protein_coding MGP_C57BL6NJ_T0038314.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101164605 101188037 - MGP_C57BL6NJ_P0038314 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038315.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101165914 101183864 - MGP_C57BL6NJ_P0038315 Hmgcr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038316.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101166081 101168442 - MGP_C57BL6NJ_P0038316 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038317.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101166992 101183811 - MGP_C57BL6NJ_P0038317 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038318.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101167759 101172306 - MGP_C57BL6NJ_P0038318 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038319.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101175983 101187976 - Hmgcr protein_coding retained_intron MGP_C57BL6NJ_T0038320.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101177249 101187924 - MGP_C57BL6NJ_P0038320 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038321.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101182805 101183688 - Hmgcr protein_coding retained_intron MGP_C57BL6NJ_T0038322.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101183215 101186755 - MGP_C57BL6NJ_P0038322 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038323.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101183220 101187583 - MGP_C57BL6NJ_P0038323 Hmgcr protein_coding protein_coding MGP_C57BL6NJ_T0038324.1 MGP_C57BL6NJ_G0021239.1 mouse_genomes_project 13 101183418 101187949 - Hmgcr protein_coding retained_intron MGP_C57BL6NJ_T0037718.1 MGP_C57BL6NJ_G0021020.1 mouse_genomes_project 13 60250266 60390256 + MGP_C57BL6NJ_P0037718 Ntrk2 protein_coding protein_coding MGP_C57BL6NJ_T0037719.1 MGP_C57BL6NJ_G0021020.1 mouse_genomes_project 13 60251570 60599545 + MGP_C57BL6NJ_P0037719 Ntrk2 protein_coding protein_coding MGP_C57BL6NJ_T0038040.1 MGP_C57BL6NJ_G0021164.1 mouse_genomes_project 13 79120381 79137511 - MGP_C57BL6NJ_P0038040 Rfesd protein_coding protein_coding MGP_C57BL6NJ_T0038041.1 MGP_C57BL6NJ_G0021164.1 mouse_genomes_project 13 79120381 79137661 - MGP_C57BL6NJ_P0038041 Rfesd protein_coding protein_coding MGP_C57BL6NJ_T0038042.1 MGP_C57BL6NJ_G0021164.1 mouse_genomes_project 13 79120381 79137555 - MGP_C57BL6NJ_P0038042 Rfesd protein_coding protein_coding MGP_C57BL6NJ_T0037577.1 MGP_C57BL6NJ_G0020970.1 mouse_genomes_project 13 56242832 56243419 - MGP_C57BL6NJ_P0037577 Gm17617 protein_coding protein_coding MGP_C57BL6NJ_T0037274.1 MGP_C57BL6NJ_G0020885.1 mouse_genomes_project 13 43518468 43585493 + MGP_C57BL6NJ_P0037274 Rnf182 protein_coding protein_coding MGP_C57BL6NJ_T0037275.1 MGP_C57BL6NJ_G0020885.1 mouse_genomes_project 13 43518741 43582616 + MGP_C57BL6NJ_P0037275 Rnf182 protein_coding protein_coding MGP_C57BL6NJ_T0037774.1 MGP_C57BL6NJ_G0021035.1 mouse_genomes_project 13 62386810 62391405 - MGP_C57BL6NJ_P0037774 Ctsll3 protein_coding protein_coding MGP_C57BL6NJ_T0038607.1 MGP_C57BL6NJ_G0021326.1 mouse_genomes_project 13 118809830 118880630 + MGP_C57BL6NJ_P0038607 Plpp1 protein_coding protein_coding MGP_C57BL6NJ_T0038608.1 MGP_C57BL6NJ_G0021326.1 mouse_genomes_project 13 118809859 118880391 + MGP_C57BL6NJ_P0038608 Plpp1 protein_coding protein_coding MGP_C57BL6NJ_T0037415.1 MGP_C57BL6NJ_G0020933.1 mouse_genomes_project 13 52174707 52188881 + MGP_C57BL6NJ_P0037415 S1pr3 protein_coding protein_coding MGP_C57BL6NJ_T0038634.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985444 120988269 + Mocs2 protein_coding retained_intron MGP_C57BL6NJ_T0038635.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985458 120989189 + Mocs2 protein_coding retained_intron MGP_C57BL6NJ_T0038636.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985470 120996132 + Mocs2 protein_coding retained_intron MGP_C57BL6NJ_T0038637.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985470 120995800 + MGP_C57BL6NJ_P0038637 Mocs2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038638.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985471 120995483 + MGP_C57BL6NJ_P0038638 Mocs2 protein_coding protein_coding MGP_C57BL6NJ_T0038639.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985477 120992723 + Mocs2 protein_coding retained_intron MGP_C57BL6NJ_T0038640.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985487 120995670 + MGP_C57BL6NJ_P0038640 Mocs2 protein_coding protein_coding MGP_C57BL6NJ_T0038641.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120985494 120995849 + MGP_C57BL6NJ_P0038641 Mocs2 protein_coding protein_coding MGP_C57BL6NJ_T0038642.1 MGP_C57BL6NJ_G0021343.1 mouse_genomes_project 13 120986105 120992431 + MGP_C57BL6NJ_P0038642 Mocs2 protein_coding protein_coding MGP_C57BL6NJ_T0036781.1 MGP_C57BL6NJ_G0020643.1 mouse_genomes_project 13 16509229 16675334 + MGP_C57BL6NJ_P0036781 Vps41 protein_coding protein_coding MGP_C57BL6NJ_T0037411.1 MGP_C57BL6NJ_G0020929.1 mouse_genomes_project 13 51125677 51133810 + MGP_C57BL6NJ_P0037411 Nutm2 protein_coding protein_coding MGP_C57BL6NJ_T0013236.1 MGP_C57BL6NJ_G0011281.1 mouse_genomes_project 13 62357326 62357692 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006758.1 MGP_C57BL6NJ_G0005600.1 mouse_genomes_project 13 71786980 71789121 + Gm26844 lincRNA lincRNA MGP_C57BL6NJ_T0037154.1 MGP_C57BL6NJ_G0020835.1 mouse_genomes_project 13 33927410 33940115 + MGP_C57BL6NJ_P0037154 Fam50b protein_coding protein_coding MGP_C57BL6NJ_T0101175.1 MGP_C57BL6NJ_G0039221.1 mouse_genomes_project 13 44852122 44852241 - Gm22213 snoRNA snoRNA MGP_C57BL6NJ_T0038531.1 MGP_C57BL6NJ_G0021306.1 mouse_genomes_project 13 113294179 113473919 - MGP_C57BL6NJ_P0038531 Zswim6 protein_coding protein_coding MGP_C57BL6NJ_T0098823.1 MGP_C57BL6NJ_G0036887.1 mouse_genomes_project 13 115433013 115433410 + pseudogene pseudogene MGP_C57BL6NJ_T0036883.1 MGP_C57BL6NJ_G0020699.1 mouse_genomes_project 13 20223576 20224479 - MGP_C57BL6NJ_P0036883 Vmn1r192 protein_coding protein_coding MGP_C57BL6NJ_T0013180.1 MGP_C57BL6NJ_G0011225.1 mouse_genomes_project 13 2119321 2119534 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036843.1 MGP_C57BL6NJ_G0020671.1 mouse_genomes_project 13 19501159 19502140 - MGP_C57BL6NJ_P0036843 Olfr1535 protein_coding protein_coding MGP_C57BL6NJ_T0011621.1 MGP_C57BL6NJ_G0009706.1 mouse_genomes_project 13 107348716 107349000 + Gm25808 misc_RNA misc_RNA MGP_C57BL6NJ_T0037788.1 MGP_C57BL6NJ_G0021047.1 mouse_genomes_project 13 63204749 63210032 - MGP_C57BL6NJ_P0037788 Ctsm protein_coding protein_coding MGP_C57BL6NJ_T0037662.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57969866 58007545 + MGP_C57BL6NJ_P0037662 Smad5 protein_coding protein_coding MGP_C57BL6NJ_T0037663.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57969895 57998382 + Smad5 protein_coding processed_transcript MGP_C57BL6NJ_T0037664.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57969908 58005128 + MGP_C57BL6NJ_P0037664 Smad5 protein_coding protein_coding MGP_C57BL6NJ_T0037665.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57969922 57998293 + Smad5 protein_coding processed_transcript MGP_C57BL6NJ_T0037666.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57970508 58005472 + MGP_C57BL6NJ_P0037666 Smad5 protein_coding protein_coding MGP_C57BL6NJ_T0037667.1 MGP_C57BL6NJ_G0021007.1 mouse_genomes_project 13 57998184 58004161 + Smad5 protein_coding processed_transcript MGP_C57BL6NJ_T0038624.1 MGP_C57BL6NJ_G0021336.1 mouse_genomes_project 13 119262200 119271291 + MGP_C57BL6NJ_P0038624 Esm1 protein_coding protein_coding MGP_C57BL6NJ_T0013190.1 MGP_C57BL6NJ_G0011235.1 mouse_genomes_project 13 19439774 19440449 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010108.1 MGP_C57BL6NJ_G0008193.1 mouse_genomes_project 13 524325 525815 - miRNA miRNA MGP_C57BL6NJ_T0037305.1 MGP_C57BL6NJ_G0020895.1 mouse_genomes_project 13 46567724 46581162 + MGP_C57BL6NJ_P0037305 Rbm24 protein_coding protein_coding MGP_C57BL6NJ_T0036907.1 MGP_C57BL6NJ_G0020723.1 mouse_genomes_project 13 21284245 21285170 + MGP_C57BL6NJ_P0036907 Vmn1r219 protein_coding protein_coding MGP_C57BL6NJ_T0003603.1 MGP_C57BL6NJ_G0003292.1 mouse_genomes_project 13 42993469 43002880 - Gm15813 antisense antisense MGP_C57BL6NJ_T0013198.1 MGP_C57BL6NJ_G0011243.1 mouse_genomes_project 13 20709289 20710599 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037842.1 MGP_C57BL6NJ_G0021063.1 mouse_genomes_project 13 66243027 66269064 + MGP_C57BL6NJ_P0037842 Habp4 protein_coding protein_coding MGP_C57BL6NJ_T0038441.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106759087 106850617 - MGP_C57BL6NJ_P0038441 Pik3r1 protein_coding protein_coding MGP_C57BL6NJ_T0038442.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106762188 106772888 - MGP_C57BL6NJ_P0038442 Pik3r1 protein_coding protein_coding MGP_C57BL6NJ_T0038443.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106766091 106772834 - MGP_C57BL6NJ_P0038443 Pik3r1 protein_coding protein_coding MGP_C57BL6NJ_T0038444.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106767549 106774855 - MGP_C57BL6NJ_P0038444 Pik3r1 protein_coding protein_coding MGP_C57BL6NJ_T0038445.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106770392 106772601 - Pik3r1 protein_coding retained_intron MGP_C57BL6NJ_T0038446.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106783599 106784255 - Pik3r1 protein_coding retained_intron MGP_C57BL6NJ_T0038447.1 MGP_C57BL6NJ_G0021282.1 mouse_genomes_project 13 106836537 106850613 - Pik3r1 protein_coding retained_intron MGP_C57BL6NJ_T0036729.1 MGP_C57BL6NJ_G0020624.1 mouse_genomes_project 13 11103291 11312300 + MGP_C57BL6NJ_P0036729 Lyst protein_coding protein_coding MGP_C57BL6NJ_T0013176.1 MGP_C57BL6NJ_G0011221.1 mouse_genomes_project 13 2119318 2119542 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003628.1 MGP_C57BL6NJ_G0003306.1 mouse_genomes_project 13 76976535 76977738 - Gm15912 antisense antisense MGP_C57BL6NJ_T0038374.1 MGP_C57BL6NJ_G0021258.1 mouse_genomes_project 13 103764441 103764922 - MGP_C57BL6NJ_P0038374 1700024P04Rik protein_coding protein_coding MGP_C57BL6NJ_T0001026.1 MGP_C57BL6NJ_G0000935.1 mouse_genomes_project 13 104466539 104467369 + TEC TEC MGP_C57BL6NJ_T0036924.1 MGP_C57BL6NJ_G0020733.1 mouse_genomes_project 13 21714378 21723273 + MGP_C57BL6NJ_P0036924 Hist1h3f protein_coding protein_coding MGP_C57BL6NJ_T0036858.1 MGP_C57BL6NJ_G0020684.1 mouse_genomes_project 13 19745597 19750928 + MGP_C57BL6NJ_P0036858 Hist1h2bp protein_coding protein_coding MGP_C57BL6NJ_T0101183.1 MGP_C57BL6NJ_G0039229.1 mouse_genomes_project 13 58208778 58208907 - Gm22777 snoRNA snoRNA MGP_C57BL6NJ_T0010111.1 MGP_C57BL6NJ_G0008196.1 mouse_genomes_project 13 3903328 3903438 - Gm22689 miRNA miRNA MGP_C57BL6NJ_T0037642.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57285661 57348462 - MGP_C57BL6NJ_P0037642 H2afy protein_coding protein_coding MGP_C57BL6NJ_T0037643.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57285661 57348462 - MGP_C57BL6NJ_P0037643 H2afy protein_coding protein_coding MGP_C57BL6NJ_T0037644.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57286208 57296564 - H2afy protein_coding retained_intron MGP_C57BL6NJ_T0037645.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57286401 57302101 - H2afy protein_coding retained_intron MGP_C57BL6NJ_T0037646.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57307598 57348361 - H2afy protein_coding processed_transcript MGP_C57BL6NJ_T0037647.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57312188 57348271 - H2afy protein_coding retained_intron MGP_C57BL6NJ_T0037648.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57315729 57349194 - H2afy protein_coding processed_transcript MGP_C57BL6NJ_T0037649.1 MGP_C57BL6NJ_G0020997.1 mouse_genomes_project 13 57315740 57347656 - H2afy protein_coding processed_transcript MGP_C57BL6NJ_T0011623.1 MGP_C57BL6NJ_G0009708.1 mouse_genomes_project 13 114143621 114143876 - Gm27572 misc_RNA misc_RNA MGP_C57BL6NJ_T0037297.1 MGP_C57BL6NJ_G0020891.1 mouse_genomes_project 13 45567673 45607325 + MGP_C57BL6NJ_P0037297 Gmpr protein_coding protein_coding MGP_C57BL6NJ_T0037298.1 MGP_C57BL6NJ_G0020891.1 mouse_genomes_project 13 45574069 45606841 + MGP_C57BL6NJ_P0037298 Gmpr protein_coding protein_coding MGP_C57BL6NJ_T0037299.1 MGP_C57BL6NJ_G0020891.1 mouse_genomes_project 13 45599751 45603493 + Gmpr protein_coding retained_intron MGP_C57BL6NJ_T0038422.1 MGP_C57BL6NJ_G0021274.1 mouse_genomes_project 13 105633575 105651802 + MGP_C57BL6NJ_P0038422 protein_coding protein_coding MGP_C57BL6NJ_T0038423.1 MGP_C57BL6NJ_G0021274.1 mouse_genomes_project 13 105633958 105637155 + protein_coding retained_intron MGP_C57BL6NJ_T0038424.1 MGP_C57BL6NJ_G0021274.1 mouse_genomes_project 13 105634222 105637233 + protein_coding retained_intron MGP_C57BL6NJ_T0099870.1 MGP_C57BL6NJ_G0037916.1 mouse_genomes_project 13 21874098 21874202 + Gm22452 snRNA snRNA MGP_C57BL6NJ_T0037111.1 MGP_C57BL6NJ_G0020821.1 mouse_genomes_project 13 32243996 32258979 + MGP_C57BL6NJ_P0037111 protein_coding protein_coding MGP_C57BL6NJ_T0037837.1 MGP_C57BL6NJ_G0021061.1 mouse_genomes_project 13 66171291 66207053 - MGP_C57BL6NJ_P0037837 Slc35d2 protein_coding protein_coding MGP_C57BL6NJ_T0036832.1 MGP_C57BL6NJ_G0020664.1 mouse_genomes_project 13 19374174 19385699 - MGP_C57BL6NJ_P0036832 Zscan26 protein_coding protein_coding MGP_C57BL6NJ_T0036833.1 MGP_C57BL6NJ_G0020664.1 mouse_genomes_project 13 19376505 19385702 - MGP_C57BL6NJ_P0036833 Zscan26 protein_coding protein_coding MGP_C57BL6NJ_T0038604.1 MGP_C57BL6NJ_G0021324.1 mouse_genomes_project 13 118595647 118652660 - MGP_C57BL6NJ_P0038604 Ddx4 protein_coding protein_coding MGP_C57BL6NJ_T0038605.1 MGP_C57BL6NJ_G0021324.1 mouse_genomes_project 13 118595647 118652660 - MGP_C57BL6NJ_P0038605 Ddx4 protein_coding protein_coding MGP_C57BL6NJ_T0013267.1 MGP_C57BL6NJ_G0011312.1 mouse_genomes_project 13 106053212 106054180 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038644.1 MGP_C57BL6NJ_G0021345.1 mouse_genomes_project 13 121136838 121295330 - MGP_C57BL6NJ_P0038644 Itga1 protein_coding protein_coding MGP_C57BL6NJ_T0011605.1 MGP_C57BL6NJ_G0009690.1 mouse_genomes_project 13 10882633 10882931 + Gm23081 misc_RNA misc_RNA MGP_C57BL6NJ_T0037336.1 MGP_C57BL6NJ_G0020904.1 mouse_genomes_project 13 47316510 47450105 + MGP_C57BL6NJ_P0037336 Rnf144b protein_coding protein_coding MGP_C57BL6NJ_T0037337.1 MGP_C57BL6NJ_G0020904.1 mouse_genomes_project 13 47391855 47450105 + MGP_C57BL6NJ_P0037337 Rnf144b protein_coding protein_coding MGP_C57BL6NJ_T0036925.1 MGP_C57BL6NJ_G0020734.1 mouse_genomes_project 13 21722466 21726001 - MGP_C57BL6NJ_P0036925 Hist1h2bh protein_coding protein_coding MGP_C57BL6NJ_T0001029.1 MGP_C57BL6NJ_G0000938.1 mouse_genomes_project 13 106830686 106832855 - TEC TEC MGP_C57BL6NJ_T0036846.1 MGP_C57BL6NJ_G0020673.1 mouse_genomes_project 13 19558280 19559265 - MGP_C57BL6NJ_P0036846 Olfr1362 protein_coding protein_coding MGP_C57BL6NJ_T0038270.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348450 99387357 + MGP_C57BL6NJ_P0038270 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0038271.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348454 99396140 + MGP_C57BL6NJ_P0038271 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0038272.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348454 99396139 + MGP_C57BL6NJ_P0038272 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0038273.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348544 99387303 + MGP_C57BL6NJ_P0038273 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0038274.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348544 99387303 + MGP_C57BL6NJ_P0038274 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0038275.1 MGP_C57BL6NJ_G0021223.1 mouse_genomes_project 13 99348544 99387303 + MGP_C57BL6NJ_P0038275 Wdr41 protein_coding protein_coding MGP_C57BL6NJ_T0011618.1 MGP_C57BL6NJ_G0009703.1 mouse_genomes_project 13 57970870 57971040 + Gm27271 misc_RNA misc_RNA MGP_C57BL6NJ_T0006697.1 MGP_C57BL6NJ_G0005560.1 mouse_genomes_project 13 30233566 30235759 - Gm11374 lincRNA lincRNA MGP_C57BL6NJ_T0037104.1 MGP_C57BL6NJ_G0020817.1 mouse_genomes_project 13 32032504 32047350 + MGP_C57BL6NJ_P0037104 Serpinb9 protein_coding protein_coding MGP_C57BL6NJ_T0037105.1 MGP_C57BL6NJ_G0020817.1 mouse_genomes_project 13 32033885 32047348 + MGP_C57BL6NJ_P0037105 Serpinb9 protein_coding protein_coding MGP_C57BL6NJ_T0006675.1 MGP_C57BL6NJ_G0005543.1 mouse_genomes_project 13 9819587 9934226 - lincRNA lincRNA MGP_C57BL6NJ_T0036796.1 MGP_C57BL6NJ_G0020647.1 mouse_genomes_project 13 17453413 17463061 + MGP_C57BL6NJ_P0036796 Sfrp4 protein_coding protein_coding MGP_C57BL6NJ_T0038249.1 MGP_C57BL6NJ_G0021213.1 mouse_genomes_project 13 97865156 97891150 - MGP_C57BL6NJ_P0038249 Bhmt protein_coding protein_coding MGP_C57BL6NJ_T0038250.1 MGP_C57BL6NJ_G0021213.1 mouse_genomes_project 13 97874688 97890755 - Bhmt protein_coding retained_intron MGP_C57BL6NJ_T0038096.1 MGP_C57BL6NJ_G0021178.1 mouse_genomes_project 13 85159642 85202639 + MGP_C57BL6NJ_P0038096 Mblac2 protein_coding protein_coding MGP_C57BL6NJ_T0037250.1 MGP_C57BL6NJ_G0020877.1 mouse_genomes_project 13 42119219 42125921 + MGP_C57BL6NJ_P0037250 Edn1 protein_coding protein_coding MGP_C57BL6NJ_T0037245.1 MGP_C57BL6NJ_G0020875.1 mouse_genomes_project 13 41540359 41633104 - MGP_C57BL6NJ_P0037245 Adtrp protein_coding protein_coding MGP_C57BL6NJ_T0037246.1 MGP_C57BL6NJ_G0020875.1 mouse_genomes_project 13 41541344 41633300 - MGP_C57BL6NJ_P0037246 Adtrp protein_coding protein_coding MGP_C57BL6NJ_T0037247.1 MGP_C57BL6NJ_G0020875.1 mouse_genomes_project 13 41541801 41633232 - MGP_C57BL6NJ_P0037247 Adtrp protein_coding protein_coding MGP_C57BL6NJ_T0037248.1 MGP_C57BL6NJ_G0020875.1 mouse_genomes_project 13 41554724 41611365 - MGP_C57BL6NJ_P0037248 Adtrp protein_coding protein_coding MGP_C57BL6NJ_T0036955.1 MGP_C57BL6NJ_G0020755.1 mouse_genomes_project 13 22095679 22102680 + MGP_C57BL6NJ_P0036955 Slc17a1 protein_coding protein_coding MGP_C57BL6NJ_T0036956.1 MGP_C57BL6NJ_G0020755.1 mouse_genomes_project 13 22095936 22122758 + MGP_C57BL6NJ_P0036956 Slc17a1 protein_coding protein_coding MGP_C57BL6NJ_T0036957.1 MGP_C57BL6NJ_G0020755.1 mouse_genomes_project 13 22098217 22104493 + Slc17a1 protein_coding processed_transcript MGP_C57BL6NJ_T0038376.1 MGP_C57BL6NJ_G0021260.1 mouse_genomes_project 13 104109632 104134454 - MGP_C57BL6NJ_P0038376 Ptcd2 protein_coding protein_coding MGP_C57BL6NJ_T0037756.1 MGP_C57BL6NJ_G0021023.1 mouse_genomes_project 13 61133469 61176067 - MGP_C57BL6NJ_P0037756 Golm1 protein_coding protein_coding MGP_C57BL6NJ_T0037757.1 MGP_C57BL6NJ_G0021023.1 mouse_genomes_project 13 61133469 61176067 - MGP_C57BL6NJ_P0037757 Golm1 protein_coding protein_coding MGP_C57BL6NJ_T0038427.1 MGP_C57BL6NJ_G0021277.1 mouse_genomes_project 13 105686074 105722065 - MGP_C57BL6NJ_P0038427 Cdk7 protein_coding protein_coding MGP_C57BL6NJ_T0036724.1 MGP_C57BL6NJ_G0020619.1 mouse_genomes_project 13 9762082 9870203 + MGP_C57BL6NJ_P0036724 Ero1lb protein_coding protein_coding MGP_C57BL6NJ_T0037033.1 MGP_C57BL6NJ_G0020782.1 mouse_genomes_project 13 25846333 25856420 + MGP_C57BL6NJ_P0037033 Prl8a2 protein_coding protein_coding MGP_C57BL6NJ_T0037034.1 MGP_C57BL6NJ_G0020782.1 mouse_genomes_project 13 25846339 25856408 + MGP_C57BL6NJ_P0037034 Prl8a2 protein_coding protein_coding MGP_C57BL6NJ_T0038236.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97526679 97611401 + MGP_C57BL6NJ_P0038236 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038237.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97527024 97591785 + MGP_C57BL6NJ_P0038237 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038238.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97527417 97585069 + MGP_C57BL6NJ_P0038238 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038239.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97527721 97629715 + MGP_C57BL6NJ_P0038239 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038240.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528025 97628304 + MGP_C57BL6NJ_P0038240 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038241.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528025 97628304 + MGP_C57BL6NJ_P0038241 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038242.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528081 97629824 + MGP_C57BL6NJ_P0038242 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038243.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528106 97591057 + MGP_C57BL6NJ_P0038243 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038244.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528200 97628340 + MGP_C57BL6NJ_P0038244 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038245.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97528200 97628340 + MGP_C57BL6NJ_P0038245 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038246.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97530956 97630163 + MGP_C57BL6NJ_P0038246 Homer1 protein_coding protein_coding MGP_C57BL6NJ_T0038247.1 MGP_C57BL6NJ_G0021211.1 mouse_genomes_project 13 97608040 97628263 + MGP_C57BL6NJ_P0038247 Homer1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037413.1 MGP_C57BL6NJ_G0020931.1 mouse_genomes_project 13 51843081 51896615 + MGP_C57BL6NJ_P0037413 Spin1 protein_coding protein_coding MGP_C57BL6NJ_T0038289.1 MGP_C57BL6NJ_G0021225.1 mouse_genomes_project 13 99725801 99738668 + MGP_C57BL6NJ_P0038289 Zbed3 protein_coding protein_coding MGP_C57BL6NJ_T0006728.1 MGP_C57BL6NJ_G0005581.1 mouse_genomes_project 13 48333672 48580380 - A330033J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0006729.1 MGP_C57BL6NJ_G0005581.1 mouse_genomes_project 13 48556820 48579838 - A330033J07Rik lincRNA lincRNA MGP_C57BL6NJ_T0038188.1 MGP_C57BL6NJ_G0021195.1 mouse_genomes_project 13 95888452 95939959 + MGP_C57BL6NJ_P0038188 Acot12 protein_coding protein_coding MGP_C57BL6NJ_T0038189.1 MGP_C57BL6NJ_G0021195.1 mouse_genomes_project 13 95888473 95917756 + Acot12 protein_coding retained_intron MGP_C57BL6NJ_T0038190.1 MGP_C57BL6NJ_G0021195.1 mouse_genomes_project 13 95933138 95938715 + Acot12 protein_coding processed_transcript MGP_C57BL6NJ_T0038643.1 MGP_C57BL6NJ_G0021344.1 mouse_genomes_project 13 121004737 121107656 - MGP_C57BL6NJ_P0038643 Itga2 protein_coding protein_coding MGP_C57BL6NJ_T0017831.1 MGP_C57BL6NJ_G0015654.1 mouse_genomes_project 13 113933987 113937144 - Gm2822 processed_transcript processed_transcript MGP_C57BL6NJ_T0006734.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54345516 54349834 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006735.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54345532 54407655 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006736.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54345548 54408741 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006737.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54345956 54347191 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006738.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54346150 54350030 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006739.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54346150 54354313 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006740.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54347187 54350046 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0006741.1 MGP_C57BL6NJ_G0005586.1 mouse_genomes_project 13 54352129 54354794 + Gm2762 lincRNA lincRNA MGP_C57BL6NJ_T0010155.1 MGP_C57BL6NJ_G0008240.1 mouse_genomes_project 13 76876032 76876171 - Gm25197 miRNA miRNA MGP_C57BL6NJ_T0038493.1 MGP_C57BL6NJ_G0021292.1 mouse_genomes_project 13 109516609 109547343 + MGP_C57BL6NJ_P0038493 Cenpk protein_coding protein_coding MGP_C57BL6NJ_T0038494.1 MGP_C57BL6NJ_G0021292.1 mouse_genomes_project 13 109517042 109541901 + MGP_C57BL6NJ_P0038494 Cenpk protein_coding protein_coding MGP_C57BL6NJ_T0037907.1 MGP_C57BL6NJ_G0021100.1 mouse_genomes_project 13 69971793 70006136 - MGP_C57BL6NJ_P0037907 Zfp874a protein_coding protein_coding MGP_C57BL6NJ_T0037908.1 MGP_C57BL6NJ_G0021100.1 mouse_genomes_project 13 69991521 70006175 - MGP_C57BL6NJ_P0037908 Zfp874a protein_coding protein_coding MGP_C57BL6NJ_T0037909.1 MGP_C57BL6NJ_G0021100.1 mouse_genomes_project 13 69991521 70006131 - MGP_C57BL6NJ_P0037909 Zfp874a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017805.1 MGP_C57BL6NJ_G0015638.1 mouse_genomes_project 13 13103922 13131326 - Gm6556 processed_transcript antisense MGP_C57BL6NJ_T0017806.1 MGP_C57BL6NJ_G0015638.1 mouse_genomes_project 13 13130472 13132393 - Gm6556 processed_transcript TEC MGP_C57BL6NJ_T0098994.1 MGP_C57BL6NJ_G0037058.1 mouse_genomes_project 13 198365 198479 + Gm23084 rRNA rRNA MGP_C57BL6NJ_T0036633.1 MGP_C57BL6NJ_G0020598.1 mouse_genomes_project 13 2560578 2569477 + MGP_C57BL6NJ_P0036633 Klf6 protein_coding protein_coding MGP_C57BL6NJ_T0036891.1 MGP_C57BL6NJ_G0020707.1 mouse_genomes_project 13 20500396 20501299 + MGP_C57BL6NJ_P0036891 Vmn1r201 protein_coding protein_coding MGP_C57BL6NJ_T0038629.1 MGP_C57BL6NJ_G0021339.1 mouse_genomes_project 13 119745109 119745890 - MGP_C57BL6NJ_P0038629 Hspb3 protein_coding protein_coding MGP_C57BL6NJ_T0037682.1 MGP_C57BL6NJ_G0021010.1 mouse_genomes_project 13 59392235 59509801 - MGP_C57BL6NJ_P0037682 protein_coding protein_coding MGP_C57BL6NJ_T0037683.1 MGP_C57BL6NJ_G0021010.1 mouse_genomes_project 13 59392971 59498647 - MGP_C57BL6NJ_P0037683 protein_coding protein_coding MGP_C57BL6NJ_T0036912.1 MGP_C57BL6NJ_G0020728.1 mouse_genomes_project 13 21505553 21521659 - MGP_C57BL6NJ_P0036912 Zfp322a protein_coding protein_coding MGP_C57BL6NJ_T0036913.1 MGP_C57BL6NJ_G0020728.1 mouse_genomes_project 13 21509481 21521451 - MGP_C57BL6NJ_P0036913 Zfp322a protein_coding protein_coding MGP_C57BL6NJ_T0036914.1 MGP_C57BL6NJ_G0020728.1 mouse_genomes_project 13 21509482 21521652 - MGP_C57BL6NJ_P0036914 Zfp322a protein_coding protein_coding MGP_C57BL6NJ_T0036915.1 MGP_C57BL6NJ_G0020728.1 mouse_genomes_project 13 21509643 21521645 - MGP_C57BL6NJ_P0036915 Zfp322a protein_coding protein_coding MGP_C57BL6NJ_T0037994.1 MGP_C57BL6NJ_G0021142.1 mouse_genomes_project 13 76762393 76792622 - MGP_C57BL6NJ_P0037994 Nkd2 protein_coding protein_coding MGP_C57BL6NJ_T0037995.1 MGP_C57BL6NJ_G0021142.1 mouse_genomes_project 13 76763553 76792603 - MGP_C57BL6NJ_P0037995 Nkd2 protein_coding protein_coding MGP_C57BL6NJ_T0037996.1 MGP_C57BL6NJ_G0021142.1 mouse_genomes_project 13 76767396 76792603 - Nkd2 protein_coding retained_intron MGP_C57BL6NJ_T0038417.1 MGP_C57BL6NJ_G0021272.1 mouse_genomes_project 13 105566231 105595199 - MGP_C57BL6NJ_P0038417 Marveld2 protein_coding protein_coding MGP_C57BL6NJ_T0038418.1 MGP_C57BL6NJ_G0021272.1 mouse_genomes_project 13 105566231 105595172 - MGP_C57BL6NJ_P0038418 Marveld2 protein_coding protein_coding MGP_C57BL6NJ_T0038419.1 MGP_C57BL6NJ_G0021272.1 mouse_genomes_project 13 105567504 105595139 - MGP_C57BL6NJ_P0038419 Marveld2 protein_coding protein_coding MGP_C57BL6NJ_T0037922.1 MGP_C57BL6NJ_G0021106.1 mouse_genomes_project 13 70196499 70214679 - MGP_C57BL6NJ_P0037922 protein_coding protein_coding MGP_C57BL6NJ_T0003645.1 MGP_C57BL6NJ_G0003313.1 mouse_genomes_project 13 97968933 97982237 - AW495222 antisense antisense MGP_C57BL6NJ_T0003646.1 MGP_C57BL6NJ_G0003313.1 mouse_genomes_project 13 97978442 97982196 - AW495222 antisense antisense MGP_C57BL6NJ_T0038268.1 MGP_C57BL6NJ_G0021222.1 mouse_genomes_project 13 99241120 99251740 + MGP_C57BL6NJ_P0038268 Otp protein_coding protein_coding MGP_C57BL6NJ_T0038269.1 MGP_C57BL6NJ_G0021222.1 mouse_genomes_project 13 99248118 99249106 + Otp protein_coding processed_transcript MGP_C57BL6NJ_T0006786.1 MGP_C57BL6NJ_G0005618.1 mouse_genomes_project 13 102041919 102108804 + Lncenc1 lincRNA lincRNA MGP_C57BL6NJ_T0006787.1 MGP_C57BL6NJ_G0005618.1 mouse_genomes_project 13 102093426 102108804 + Lncenc1 lincRNA lincRNA MGP_C57BL6NJ_T0006788.1 MGP_C57BL6NJ_G0005618.1 mouse_genomes_project 13 102093680 102100426 + Lncenc1 lincRNA lincRNA MGP_C57BL6NJ_T0036933.1 MGP_C57BL6NJ_G0020740.1 mouse_genomes_project 13 21835772 21837616 - MGP_C57BL6NJ_P0036933 Hist1h1e protein_coding protein_coding MGP_C57BL6NJ_T0037758.1 MGP_C57BL6NJ_G0021024.1 mouse_genomes_project 13 61187632 61194381 - MGP_C57BL6NJ_P0037758 4921517D22Rik protein_coding protein_coding MGP_C57BL6NJ_T0006694.1 MGP_C57BL6NJ_G0005557.1 mouse_genomes_project 13 30109944 30120086 - 4930401O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0037760.1 MGP_C57BL6NJ_G0021026.1 mouse_genomes_project 13 61218508 61228941 + MGP_C57BL6NJ_P0037760 Spata31d1b protein_coding protein_coding MGP_C57BL6NJ_T0038482.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109426165 109464389 - MGP_C57BL6NJ_P0038482 Trappc13 protein_coding protein_coding MGP_C57BL6NJ_T0038483.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109426172 109464345 - MGP_C57BL6NJ_P0038483 Trappc13 protein_coding protein_coding MGP_C57BL6NJ_T0038484.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109428594 109464343 - MGP_C57BL6NJ_P0038484 Trappc13 protein_coding protein_coding MGP_C57BL6NJ_T0038485.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109429231 109464327 - MGP_C57BL6NJ_P0038485 Trappc13 protein_coding protein_coding MGP_C57BL6NJ_T0038486.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109453087 109464379 - Trappc13 protein_coding retained_intron MGP_C57BL6NJ_T0038487.1 MGP_C57BL6NJ_G0021289.1 mouse_genomes_project 13 109459796 109464359 - Trappc13 protein_coding processed_transcript MGP_C57BL6NJ_T0013244.1 MGP_C57BL6NJ_G0011289.1 mouse_genomes_project 13 70284341 70285291 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013188.1 MGP_C57BL6NJ_G0011233.1 mouse_genomes_project 13 19202515 19202986 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037086.1 MGP_C57BL6NJ_G0020809.1 mouse_genomes_project 13 30757710 30761663 + MGP_C57BL6NJ_P0037086 Foxc1 protein_coding protein_coding MGP_C57BL6NJ_T0010139.1 MGP_C57BL6NJ_G0008224.1 mouse_genomes_project 13 56622417 56622513 - Mir6944 miRNA miRNA MGP_C57BL6NJ_T0001004.1 MGP_C57BL6NJ_G0000914.1 mouse_genomes_project 13 17205169 17207497 - TEC TEC MGP_C57BL6NJ_T0037523.1 MGP_C57BL6NJ_G0020961.1 mouse_genomes_project 13 55775766 55815371 + MGP_C57BL6NJ_P0037523 Cdhr2 protein_coding protein_coding MGP_C57BL6NJ_T0013179.1 MGP_C57BL6NJ_G0011224.1 mouse_genomes_project 13 2119318 2119537 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038366.1 MGP_C57BL6NJ_G0021256.1 mouse_genomes_project 13 103469694 103571986 - MGP_C57BL6NJ_P0038366 Fcho2 protein_coding protein_coding MGP_C57BL6NJ_T0038367.1 MGP_C57BL6NJ_G0021256.1 mouse_genomes_project 13 103469694 103571986 - MGP_C57BL6NJ_P0038367 Fcho2 protein_coding protein_coding MGP_C57BL6NJ_T0038368.1 MGP_C57BL6NJ_G0021256.1 mouse_genomes_project 13 103500637 103571986 - MGP_C57BL6NJ_P0038368 Fcho2 protein_coding protein_coding MGP_C57BL6NJ_T0038369.1 MGP_C57BL6NJ_G0021256.1 mouse_genomes_project 13 103502605 103571986 - MGP_C57BL6NJ_P0038369 Fcho2 protein_coding protein_coding MGP_C57BL6NJ_T0036710.1 MGP_C57BL6NJ_G0020613.1 mouse_genomes_project 13 8655292 9251425 - MGP_C57BL6NJ_P0036710 Ryr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036711.1 MGP_C57BL6NJ_G0020613.1 mouse_genomes_project 13 8655302 9252011 - MGP_C57BL6NJ_P0036711 Ryr2 protein_coding protein_coding MGP_C57BL6NJ_T0036712.1 MGP_C57BL6NJ_G0020613.1 mouse_genomes_project 13 8655302 9252011 - MGP_C57BL6NJ_P0036712 Ryr2 protein_coding protein_coding MGP_C57BL6NJ_T0038197.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96026173 96134708 - MGP_C57BL6NJ_P0038197 protein_coding protein_coding MGP_C57BL6NJ_T0038198.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96026176 96266858 - MGP_C57BL6NJ_P0038198 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038199.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96030240 96266858 - MGP_C57BL6NJ_P0038199 protein_coding protein_coding MGP_C57BL6NJ_T0038200.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96105567 96134629 - MGP_C57BL6NJ_P0038200 protein_coding protein_coding MGP_C57BL6NJ_T0038201.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96163302 96267020 - MGP_C57BL6NJ_P0038201 protein_coding protein_coding MGP_C57BL6NJ_T0038202.1 MGP_C57BL6NJ_G0021198.1 mouse_genomes_project 13 96163302 96165711 - MGP_C57BL6NJ_P0038202 protein_coding protein_coding MGP_C57BL6NJ_T0037587.1 MGP_C57BL6NJ_G0020976.1 mouse_genomes_project 13 56470217 56489113 - MGP_C57BL6NJ_P0037587 Lman2 protein_coding protein_coding MGP_C57BL6NJ_T0038292.1 MGP_C57BL6NJ_G0021227.1 mouse_genomes_project 13 99839385 99855531 - MGP_C57BL6NJ_P0038292 Crhbp protein_coding protein_coding MGP_C57BL6NJ_T0036878.1 MGP_C57BL6NJ_G0020694.1 mouse_genomes_project 13 20044385 20044977 - MGP_C57BL6NJ_P0036878 protein_coding protein_coding MGP_C57BL6NJ_T0003623.1 MGP_C57BL6NJ_G0003303.1 mouse_genomes_project 13 72212711 72214872 - antisense antisense MGP_C57BL6NJ_T0013189.1 MGP_C57BL6NJ_G0011234.1 mouse_genomes_project 13 19287650 19288090 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038654.1 MGP_C57BL6NJ_G0021351.1 mouse_genomes_project 13 123975370 124379141 + MGP_C57BL6NJ_P0038654 Hcn1 protein_coding protein_coding MGP_C57BL6NJ_T0036637.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3345571 3354770 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036638.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3345571 3409362 - MGP_C57BL6NJ_P0036638 Pfkp protein_coding protein_coding MGP_C57BL6NJ_T0036639.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3346985 3409310 - MGP_C57BL6NJ_P0036639 Pfkp protein_coding protein_coding MGP_C57BL6NJ_T0036640.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3347271 3352899 - MGP_C57BL6NJ_P0036640 Pfkp protein_coding protein_coding MGP_C57BL6NJ_T0036641.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3348276 3364564 - MGP_C57BL6NJ_P0036641 Pfkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036642.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3348276 3363683 - MGP_C57BL6NJ_P0036642 Pfkp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036643.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3351691 3354429 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036644.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3358776 3409310 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036645.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3364098 3368615 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036646.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3368204 3409310 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036647.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3373200 3380734 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036648.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3377742 3409310 - Pfkp protein_coding retained_intron MGP_C57BL6NJ_T0036649.1 MGP_C57BL6NJ_G0020601.1 mouse_genomes_project 13 3379571 3395320 - MGP_C57BL6NJ_P0036649 Pfkp protein_coding protein_coding MGP_C57BL6NJ_T0038675.1 MGP_C57BL6NJ_G0021359.1 mouse_genomes_project 13 126086873 126102205 + MGP_C57BL6NJ_P0038675 protein_coding protein_coding MGP_C57BL6NJ_T0038676.1 MGP_C57BL6NJ_G0021359.1 mouse_genomes_project 13 126086971 126102205 + MGP_C57BL6NJ_P0038676 protein_coding protein_coding MGP_C57BL6NJ_T0038677.1 MGP_C57BL6NJ_G0021359.1 mouse_genomes_project 13 126094064 126102232 + MGP_C57BL6NJ_P0038677 protein_coding protein_coding MGP_C57BL6NJ_T0003605.1 MGP_C57BL6NJ_G0003294.1 mouse_genomes_project 13 55254496 55258067 - Gm16578 antisense antisense MGP_C57BL6NJ_T0038031.1 MGP_C57BL6NJ_G0021158.1 mouse_genomes_project 13 77748674 77865395 - MGP_C57BL6NJ_P0038031 Cast protein_coding protein_coding MGP_C57BL6NJ_T0013201.1 MGP_C57BL6NJ_G0011246.1 mouse_genomes_project 13 21450531 21450679 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036927.1 MGP_C57BL6NJ_G0020736.1 mouse_genomes_project 13 21759368 21772644 - MGP_C57BL6NJ_P0036927 Hist1h2ae protein_coding protein_coding MGP_C57BL6NJ_T0102811.1 MGP_C57BL6NJ_G0040605.1 mouse_genomes_project 13 21050013 21050974 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037691.1 MGP_C57BL6NJ_G0021016.1 mouse_genomes_project 13 59797219 59807691 - MGP_C57BL6NJ_P0037691 2210016F16Rik protein_coding protein_coding MGP_C57BL6NJ_T0003602.1 MGP_C57BL6NJ_G0003291.1 mouse_genomes_project 13 42639106 42646697 - Gm15810 antisense antisense MGP_C57BL6NJ_T0098996.1 MGP_C57BL6NJ_G0037060.1 mouse_genomes_project 13 21895668 21895776 - Gm24991 rRNA rRNA MGP_C57BL6NJ_T0003619.1 MGP_C57BL6NJ_G0003301.1 mouse_genomes_project 13 70323919 70364262 + antisense antisense MGP_C57BL6NJ_T0003620.1 MGP_C57BL6NJ_G0003301.1 mouse_genomes_project 13 70350594 70362353 + antisense antisense MGP_C57BL6NJ_T0003621.1 MGP_C57BL6NJ_G0003301.1 mouse_genomes_project 13 70353457 70365386 + antisense antisense MGP_C57BL6NJ_T0036905.1 MGP_C57BL6NJ_G0020721.1 mouse_genomes_project 13 21230616 21231513 - MGP_C57BL6NJ_P0036905 Vmn1r217 protein_coding protein_coding MGP_C57BL6NJ_T0099886.1 MGP_C57BL6NJ_G0037932.1 mouse_genomes_project 13 62513722 62513821 + Gm24594 snRNA snRNA MGP_C57BL6NJ_T0038034.1 MGP_C57BL6NJ_G0021160.1 mouse_genomes_project 13 78819852 78890835 + MGP_C57BL6NJ_P0038034 Ell2 protein_coding protein_coding MGP_C57BL6NJ_T0013248.1 MGP_C57BL6NJ_G0011293.1 mouse_genomes_project 13 76987152 76988494 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003593.1 MGP_C57BL6NJ_G0003284.1 mouse_genomes_project 13 23205831 23214398 + 4932702P03Rik antisense antisense MGP_C57BL6NJ_T0003594.1 MGP_C57BL6NJ_G0003284.1 mouse_genomes_project 13 23205834 23207516 + 4932702P03Rik antisense antisense MGP_C57BL6NJ_T0037943.1 MGP_C57BL6NJ_G0021120.1 mouse_genomes_project 13 71233768 71640437 - MGP_C57BL6NJ_P0037943 Adcy2 protein_coding protein_coding MGP_C57BL6NJ_T0037463.1 MGP_C57BL6NJ_G0020945.1 mouse_genomes_project 13 54281645 54327094 - MGP_C57BL6NJ_P0037463 Sptlc1 protein_coding protein_coding MGP_C57BL6NJ_T0037583.1 MGP_C57BL6NJ_G0020974.1 mouse_genomes_project 13 56446181 56449836 + MGP_C57BL6NJ_P0037583 Prelid1 protein_coding protein_coding MGP_C57BL6NJ_T0037438.1 MGP_C57BL6NJ_G0020939.1 mouse_genomes_project 13 52661151 52662942 + MGP_C57BL6NJ_P0037438 Gadd45g protein_coding protein_coding MGP_C57BL6NJ_T0037439.1 MGP_C57BL6NJ_G0020939.1 mouse_genomes_project 13 52661217 52662698 + Gadd45g protein_coding retained_intron MGP_C57BL6NJ_T0036898.1 MGP_C57BL6NJ_G0020714.1 mouse_genomes_project 13 20906308 20907345 - MGP_C57BL6NJ_P0036898 Vmn1r210 protein_coding protein_coding MGP_C57BL6NJ_T0003601.1 MGP_C57BL6NJ_G0003290.1 mouse_genomes_project 13 41627903 41635378 + Gm28564 antisense antisense MGP_C57BL6NJ_T0037509.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55751692 55760386 - MGP_C57BL6NJ_P0037509 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037510.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55751695 55759826 - MGP_C57BL6NJ_P0037510 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037511.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55751701 55766198 - MGP_C57BL6NJ_P0037511 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037512.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55751705 55760480 - MGP_C57BL6NJ_P0037512 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037513.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55754938 55756364 - Rnf44 protein_coding retained_intron MGP_C57BL6NJ_T0037514.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55755343 55766137 - MGP_C57BL6NJ_P0037514 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037515.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55755419 55759946 - MGP_C57BL6NJ_P0037515 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037516.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55755776 55756699 - Rnf44 protein_coding retained_intron MGP_C57BL6NJ_T0037517.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55755901 55760492 - MGP_C57BL6NJ_P0037517 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037518.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55755997 55760549 - MGP_C57BL6NJ_P0037518 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037519.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55756255 55766103 - MGP_C57BL6NJ_P0037519 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0037520.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55756321 55759545 - Rnf44 protein_coding processed_transcript MGP_C57BL6NJ_T0037521.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55756332 55766141 - Rnf44 protein_coding processed_transcript MGP_C57BL6NJ_T0037522.1 MGP_C57BL6NJ_G0020960.1 mouse_genomes_project 13 55756341 55760565 - MGP_C57BL6NJ_P0037522 Rnf44 protein_coding protein_coding MGP_C57BL6NJ_T0099888.1 MGP_C57BL6NJ_G0037934.1 mouse_genomes_project 13 83488797 83488925 + Gm24635 snRNA snRNA MGP_C57BL6NJ_T0013239.1 MGP_C57BL6NJ_G0011284.1 mouse_genomes_project 13 64767405 64767741 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038581.1 MGP_C57BL6NJ_G0021318.1 mouse_genomes_project 13 117500091 117500163 + MGP_C57BL6NJ_P0038581 Gm10198 protein_coding protein_coding MGP_C57BL6NJ_T0037046.1 MGP_C57BL6NJ_G0020789.1 mouse_genomes_project 13 26149206 26164074 - MGP_C57BL6NJ_P0037046 Prl7a1 protein_coding protein_coding MGP_C57BL6NJ_T0037047.1 MGP_C57BL6NJ_G0020789.1 mouse_genomes_project 13 26149206 26164064 - MGP_C57BL6NJ_P0037047 Prl7a1 protein_coding protein_coding MGP_C57BL6NJ_T0038666.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126022264 126051787 + MGP_C57BL6NJ_P0038666 Paip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038667.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126022278 126051544 + MGP_C57BL6NJ_P0038667 Paip1 protein_coding protein_coding MGP_C57BL6NJ_T0038668.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126022278 126051673 + MGP_C57BL6NJ_P0038668 Paip1 protein_coding protein_coding MGP_C57BL6NJ_T0038669.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126022278 126051825 + MGP_C57BL6NJ_P0038669 Paip1 protein_coding protein_coding MGP_C57BL6NJ_T0038670.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126022303 126044691 + MGP_C57BL6NJ_P0038670 Paip1 protein_coding protein_coding MGP_C57BL6NJ_T0038671.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126033942 126051482 + MGP_C57BL6NJ_P0038671 Paip1 protein_coding protein_coding MGP_C57BL6NJ_T0038672.1 MGP_C57BL6NJ_G0021356.1 mouse_genomes_project 13 126044180 126045703 + Paip1 protein_coding retained_intron MGP_C57BL6NJ_T0036818.1 MGP_C57BL6NJ_G0020659.1 mouse_genomes_project 13 19219958 19227889 + MGP_C57BL6NJ_P0036818 Gpx6 protein_coding protein_coding MGP_C57BL6NJ_T0036819.1 MGP_C57BL6NJ_G0020659.1 mouse_genomes_project 13 19225526 19227893 + Gpx6 protein_coding processed_transcript MGP_C57BL6NJ_T0036761.1 MGP_C57BL6NJ_G0020634.1 mouse_genomes_project 13 12246272 12254234 + MGP_C57BL6NJ_P0036761 AW209491 protein_coding protein_coding MGP_C57BL6NJ_T0036762.1 MGP_C57BL6NJ_G0020634.1 mouse_genomes_project 13 12246285 12254234 + MGP_C57BL6NJ_P0036762 AW209491 protein_coding protein_coding MGP_C57BL6NJ_T0037224.1 MGP_C57BL6NJ_G0020864.1 mouse_genomes_project 13 40730258 40744311 + MGP_C57BL6NJ_P0037224 Pak1ip1 protein_coding protein_coding MGP_C57BL6NJ_T0037225.1 MGP_C57BL6NJ_G0020864.1 mouse_genomes_project 13 40730259 40738747 + Pak1ip1 protein_coding retained_intron MGP_C57BL6NJ_T0037226.1 MGP_C57BL6NJ_G0020864.1 mouse_genomes_project 13 40730473 40744303 + Pak1ip1 protein_coding retained_intron MGP_C57BL6NJ_T0037227.1 MGP_C57BL6NJ_G0020864.1 mouse_genomes_project 13 40730495 40738396 + Pak1ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0037228.1 MGP_C57BL6NJ_G0020864.1 mouse_genomes_project 13 40730501 40744315 + Pak1ip1 protein_coding retained_intron MGP_C57BL6NJ_T0036748.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11605850 11681089 + Arid4b protein_coding processed_transcript MGP_C57BL6NJ_T0036749.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606402 11731037 + MGP_C57BL6NJ_P0036749 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036750.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606403 11764121 + MGP_C57BL6NJ_P0036750 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036751.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606410 11764116 + MGP_C57BL6NJ_P0036751 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036752.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606410 11764357 + MGP_C57BL6NJ_P0036752 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036753.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606417 11726759 + MGP_C57BL6NJ_P0036753 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036754.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11606673 11674059 + Arid4b protein_coding processed_transcript MGP_C57BL6NJ_T0036755.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11731055 11758479 + MGP_C57BL6NJ_P0036755 Arid4b protein_coding protein_coding MGP_C57BL6NJ_T0036756.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11740142 11755988 + Arid4b protein_coding processed_transcript MGP_C57BL6NJ_T0036757.1 MGP_C57BL6NJ_G0020630.1 mouse_genomes_project 13 11755930 11762508 + Arid4b protein_coding processed_transcript MGP_C57BL6NJ_T0038510.1 MGP_C57BL6NJ_G0021300.1 mouse_genomes_project 13 110827599 110832040 + MGP_C57BL6NJ_P0038510 Htr1a protein_coding protein_coding MGP_C57BL6NJ_T0013273.1 MGP_C57BL6NJ_G0011318.1 mouse_genomes_project 13 117819887 117821672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037581.1 MGP_C57BL6NJ_G0020972.1 mouse_genomes_project 13 56327699 56442457 + MGP_C57BL6NJ_P0037581 Nsd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036852.1 MGP_C57BL6NJ_G0020678.1 mouse_genomes_project 13 19669040 19669397 - MGP_C57BL6NJ_P0036852 Hist1h2bl protein_coding protein_coding MGP_C57BL6NJ_T0038231.1 MGP_C57BL6NJ_G0021207.1 mouse_genomes_project 13 96942489 96986572 - MGP_C57BL6NJ_P0038231 Thbs4 protein_coding protein_coding MGP_C57BL6NJ_T0038232.1 MGP_C57BL6NJ_G0021207.1 mouse_genomes_project 13 96963731 96965545 - Thbs4 protein_coding retained_intron MGP_C57BL6NJ_T0102825.1 MGP_C57BL6NJ_G0040619.1 mouse_genomes_project 13 32705405 32712341 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036859.1 MGP_C57BL6NJ_G0020685.1 mouse_genomes_project 13 19803169 19803590 - MGP_C57BL6NJ_P0036859 Hist1h4n protein_coding protein_coding MGP_C57BL6NJ_T0010123.1 MGP_C57BL6NJ_G0008208.1 mouse_genomes_project 13 21974509 21974647 - Gm44484 miRNA miRNA MGP_C57BL6NJ_T0037316.1 MGP_C57BL6NJ_G0020899.1 mouse_genomes_project 13 46916527 47112096 - MGP_C57BL6NJ_P0037316 Kif13a protein_coding protein_coding MGP_C57BL6NJ_T0037317.1 MGP_C57BL6NJ_G0020899.1 mouse_genomes_project 13 46916528 47112047 - MGP_C57BL6NJ_P0037317 Kif13a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036944.1 MGP_C57BL6NJ_G0020749.1 mouse_genomes_project 13 21984717 21985256 - MGP_C57BL6NJ_P0036944 Hist1h4a protein_coding protein_coding MGP_C57BL6NJ_T0038296.1 MGP_C57BL6NJ_G0021231.1 mouse_genomes_project 13 100055233 100340655 - MGP_C57BL6NJ_P0038296 Iqgap2 protein_coding protein_coding MGP_C57BL6NJ_T0037851.1 MGP_C57BL6NJ_G0021069.1 mouse_genomes_project 13 66863885 67039643 - MGP_C57BL6NJ_P0037851 Cntnap3 protein_coding protein_coding MGP_C57BL6NJ_T0010143.1 MGP_C57BL6NJ_G0008228.1 mouse_genomes_project 13 59815406 59815514 - Mir7-1 miRNA miRNA MGP_C57BL6NJ_T0099874.1 MGP_C57BL6NJ_G0037920.1 mouse_genomes_project 13 30683890 30683998 - Gm25186 snRNA snRNA MGP_C57BL6NJ_T0038657.1 MGP_C57BL6NJ_G0021354.1 mouse_genomes_project 13 125165468 125308845 + Fgf10 protein_coding processed_transcript MGP_C57BL6NJ_T0038658.1 MGP_C57BL6NJ_G0021354.1 mouse_genomes_project 13 125165501 125301093 + Fgf10 protein_coding processed_transcript MGP_C57BL6NJ_T0038659.1 MGP_C57BL6NJ_G0021354.1 mouse_genomes_project 13 125232697 125311590 + MGP_C57BL6NJ_P0038659 Fgf10 protein_coding protein_coding MGP_C57BL6NJ_T0099887.1 MGP_C57BL6NJ_G0037933.1 mouse_genomes_project 13 66385323 66385411 - Gm25654 snRNA snRNA MGP_C57BL6NJ_T0010160.1 MGP_C57BL6NJ_G0008245.1 mouse_genomes_project 13 94841717 94841827 + Gm44338 miRNA miRNA MGP_C57BL6NJ_T0102790.1 MGP_C57BL6NJ_G0040584.1 mouse_genomes_project 13 20084318 20084750 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037293.1 MGP_C57BL6NJ_G0020888.1 mouse_genomes_project 13 44940673 45029396 - MGP_C57BL6NJ_P0037293 Dtnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037294.1 MGP_C57BL6NJ_G0020888.1 mouse_genomes_project 13 44940679 45029396 - MGP_C57BL6NJ_P0037294 Dtnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0010164.1 MGP_C57BL6NJ_G0008249.1 mouse_genomes_project 13 98858791 98858905 + Gm25109 miRNA miRNA MGP_C57BL6NJ_T0036884.1 MGP_C57BL6NJ_G0020700.1 mouse_genomes_project 13 20275365 20276256 + MGP_C57BL6NJ_P0036884 Vmn1r194 protein_coding protein_coding MGP_C57BL6NJ_T0036851.1 MGP_C57BL6NJ_G0020677.1 mouse_genomes_project 13 19622328 19627081 - MGP_C57BL6NJ_P0036851 protein_coding protein_coding MGP_C57BL6NJ_T0037882.1 MGP_C57BL6NJ_G0021083.1 mouse_genomes_project 13 69383769 69451308 + MGP_C57BL6NJ_P0037882 Ptdss1 protein_coding protein_coding MGP_C57BL6NJ_T0037417.1 MGP_C57BL6NJ_G0020935.1 mouse_genomes_project 13 52435737 52441059 + MGP_C57BL6NJ_P0037417 Cks2 protein_coding protein_coding MGP_C57BL6NJ_T0038029.1 MGP_C57BL6NJ_G0021156.1 mouse_genomes_project 13 77355732 77378454 - MGP_C57BL6NJ_P0038029 Zfp72 protein_coding protein_coding MGP_C57BL6NJ_T0036881.1 MGP_C57BL6NJ_G0020697.1 mouse_genomes_project 13 20178057 20179142 - MGP_C57BL6NJ_P0036881 Vmn1r223 protein_coding protein_coding MGP_C57BL6NJ_T0037835.1 MGP_C57BL6NJ_G0021060.1 mouse_genomes_project 13 66133794 66164707 - MGP_C57BL6NJ_P0037835 Hsd17b3 protein_coding protein_coding MGP_C57BL6NJ_T0037836.1 MGP_C57BL6NJ_G0021060.1 mouse_genomes_project 13 66133794 66164722 - MGP_C57BL6NJ_P0037836 Hsd17b3 protein_coding protein_coding MGP_C57BL6NJ_T0003580.1 MGP_C57BL6NJ_G0003272.1 mouse_genomes_project 13 7415768 7747978 + antisense antisense MGP_C57BL6NJ_T0101185.1 MGP_C57BL6NJ_G0039231.1 mouse_genomes_project 13 67304636 67304787 + Gm24130 snoRNA snoRNA MGP_C57BL6NJ_T0036732.1 MGP_C57BL6NJ_G0020626.1 mouse_genomes_project 13 11496640 11540579 + MGP_C57BL6NJ_P0036732 B3galnt2 protein_coding protein_coding MGP_C57BL6NJ_T0038511.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112288218 112437717 - MGP_C57BL6NJ_P0038511 Ipo11 protein_coding protein_coding MGP_C57BL6NJ_T0038512.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112288218 112424823 - MGP_C57BL6NJ_P0038512 Ipo11 protein_coding protein_coding MGP_C57BL6NJ_T0038513.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112288226 112342733 - MGP_C57BL6NJ_P0038513 Ipo11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038514.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112307089 112353404 - Ipo11 protein_coding retained_intron MGP_C57BL6NJ_T0038515.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112307194 112331624 - Ipo11 protein_coding retained_intron MGP_C57BL6NJ_T0038516.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112329016 112342570 - Ipo11 protein_coding processed_transcript MGP_C57BL6NJ_T0038517.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112329018 112331612 - Ipo11 protein_coding processed_transcript MGP_C57BL6NJ_T0038518.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112337391 112343767 - Ipo11 protein_coding retained_intron MGP_C57BL6NJ_T0038519.1 MGP_C57BL6NJ_G0021301.1 mouse_genomes_project 13 112356011 112437704 - Ipo11 protein_coding retained_intron MGP_C57BL6NJ_T0036861.1 MGP_C57BL6NJ_G0020687.1 mouse_genomes_project 13 19810532 19814681 + MGP_C57BL6NJ_P0036861 protein_coding protein_coding MGP_C57BL6NJ_T0036862.1 MGP_C57BL6NJ_G0020687.1 mouse_genomes_project 13 19810532 19814881 + MGP_C57BL6NJ_P0036862 protein_coding protein_coding MGP_C57BL6NJ_T0037690.1 MGP_C57BL6NJ_G0021015.1 mouse_genomes_project 13 59700971 59774783 - MGP_C57BL6NJ_P0037690 Kif27 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037588.1 MGP_C57BL6NJ_G0020977.1 mouse_genomes_project 13 56498299 56513235 + MGP_C57BL6NJ_P0037588 Rgs14 protein_coding protein_coding MGP_C57BL6NJ_T0037589.1 MGP_C57BL6NJ_G0020977.1 mouse_genomes_project 13 56498338 56507993 + MGP_C57BL6NJ_P0037589 Rgs14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037590.1 MGP_C57BL6NJ_G0020977.1 mouse_genomes_project 13 56507716 56513234 + Rgs14 protein_coding retained_intron MGP_C57BL6NJ_T0101160.1 MGP_C57BL6NJ_G0039206.1 mouse_genomes_project 13 1842944 1843076 - Gm24790 snoRNA snoRNA MGP_C57BL6NJ_T0006749.1 MGP_C57BL6NJ_G0005593.1 mouse_genomes_project 13 57451806 57477777 - 4930550C17Rik lincRNA lincRNA MGP_C57BL6NJ_T0037267.1 MGP_C57BL6NJ_G0020879.1 mouse_genomes_project 13 43031685 43053614 - MGP_C57BL6NJ_P0037267 Tbc1d7 protein_coding protein_coding MGP_C57BL6NJ_T0037268.1 MGP_C57BL6NJ_G0020879.1 mouse_genomes_project 13 43031685 43053614 - MGP_C57BL6NJ_P0037268 Tbc1d7 protein_coding protein_coding MGP_C57BL6NJ_T0036841.1 MGP_C57BL6NJ_G0020670.1 mouse_genomes_project 13 19472394 19473381 - MGP_C57BL6NJ_P0036841 Olfr1366 protein_coding protein_coding MGP_C57BL6NJ_T0006718.1 MGP_C57BL6NJ_G0005574.1 mouse_genomes_project 13 41112440 41125077 + Gm26877 lincRNA lincRNA MGP_C57BL6NJ_T0036926.1 MGP_C57BL6NJ_G0020735.1 mouse_genomes_project 13 21736739 21737130 - MGP_C57BL6NJ_P0036926 Hist1h4f protein_coding protein_coding MGP_C57BL6NJ_T0006716.1 MGP_C57BL6NJ_G0005572.1 mouse_genomes_project 13 38539930 38545693 - Gm26514 lincRNA lincRNA MGP_C57BL6NJ_T0037769.1 MGP_C57BL6NJ_G0021032.1 mouse_genomes_project 13 61766683 61767685 + MGP_C57BL6NJ_P0037769 Gm5084 protein_coding protein_coding MGP_C57BL6NJ_T0036863.1 MGP_C57BL6NJ_G0020688.1 mouse_genomes_project 13 19810532 19814881 + MGP_C57BL6NJ_P0036863 protein_coding protein_coding MGP_C57BL6NJ_T0013214.1 MGP_C57BL6NJ_G0011259.1 mouse_genomes_project 13 25325999 25326305 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006695.1 MGP_C57BL6NJ_G0005558.1 mouse_genomes_project 13 30199155 30303842 + Gm11376 lincRNA lincRNA MGP_C57BL6NJ_T0036857.1 MGP_C57BL6NJ_G0020683.1 mouse_genomes_project 13 19738238 19738981 - MGP_C57BL6NJ_P0036857 Hist1h1b protein_coding protein_coding MGP_C57BL6NJ_T0037241.1 MGP_C57BL6NJ_G0020872.1 mouse_genomes_project 13 41059520 41249735 - MGP_C57BL6NJ_P0037241 Nedd9 protein_coding protein_coding MGP_C57BL6NJ_T0037242.1 MGP_C57BL6NJ_G0020872.1 mouse_genomes_project 13 41059520 41111472 - MGP_C57BL6NJ_P0037242 Nedd9 protein_coding protein_coding MGP_C57BL6NJ_T0038428.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105728807 105736950 - MGP_C57BL6NJ_P0038428 Mrps36 protein_coding protein_coding MGP_C57BL6NJ_T0038429.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105728929 105736948 - MGP_C57BL6NJ_P0038429 Mrps36 protein_coding protein_coding MGP_C57BL6NJ_T0038430.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105728981 105736422 - Mrps36 protein_coding processed_transcript MGP_C57BL6NJ_T0038431.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105729004 105736879 - Mrps36 protein_coding processed_transcript MGP_C57BL6NJ_T0038432.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105729032 105736405 - Mrps36 protein_coding processed_transcript MGP_C57BL6NJ_T0038433.1 MGP_C57BL6NJ_G0021278.1 mouse_genomes_project 13 105735696 105736404 - Mrps36 protein_coding processed_transcript MGP_C57BL6NJ_T0013191.1 MGP_C57BL6NJ_G0011236.1 mouse_genomes_project 13 19867801 19868798 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011610.1 MGP_C57BL6NJ_G0009695.1 mouse_genomes_project 13 38489937 38490165 - Gm22035 misc_RNA misc_RNA MGP_C57BL6NJ_T0037863.1 MGP_C57BL6NJ_G0021078.1 mouse_genomes_project 13 67448725 67482959 + MGP_C57BL6NJ_P0037863 Zfp369 protein_coding protein_coding MGP_C57BL6NJ_T0037864.1 MGP_C57BL6NJ_G0021078.1 mouse_genomes_project 13 67448725 67467030 + MGP_C57BL6NJ_P0037864 Zfp369 protein_coding protein_coding MGP_C57BL6NJ_T0037865.1 MGP_C57BL6NJ_G0021078.1 mouse_genomes_project 13 67448763 67456723 + Zfp369 protein_coding retained_intron MGP_C57BL6NJ_T0037866.1 MGP_C57BL6NJ_G0021078.1 mouse_genomes_project 13 67448814 67454205 + MGP_C57BL6NJ_P0037866 Zfp369 protein_coding protein_coding MGP_C57BL6NJ_T0013261.1 MGP_C57BL6NJ_G0011306.1 mouse_genomes_project 13 92374156 92374627 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101195.1 MGP_C57BL6NJ_G0039241.1 mouse_genomes_project 13 89753211 89753271 - Gm22574 snoRNA snoRNA MGP_C57BL6NJ_T0101200.1 MGP_C57BL6NJ_G0039246.1 mouse_genomes_project 13 104522646 104522777 - Gm24471 snoRNA snoRNA MGP_C57BL6NJ_T0013197.1 MGP_C57BL6NJ_G0011242.1 mouse_genomes_project 13 20490081 20493636 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037623.1 MGP_C57BL6NJ_G0020988.1 mouse_genomes_project 13 56745610 56750139 + MGP_C57BL6NJ_P0037623 Tmed9 protein_coding protein_coding MGP_C57BL6NJ_T0038157.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93699104 93787869 - MGP_C57BL6NJ_P0038157 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038158.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93700132 93787682 - MGP_C57BL6NJ_P0038158 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038159.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93700437 93787694 - MGP_C57BL6NJ_P0038159 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038160.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93700809 93723520 - MGP_C57BL6NJ_P0038160 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038161.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93700848 93787604 - MGP_C57BL6NJ_P0038161 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038162.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93701447 93724307 - MGP_C57BL6NJ_P0038162 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038163.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93756079 93767322 - Vcan protein_coding retained_intron MGP_C57BL6NJ_T0038164.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93756622 93787678 - MGP_C57BL6NJ_P0038164 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038165.1 MGP_C57BL6NJ_G0021187.1 mouse_genomes_project 13 93770784 93785757 - MGP_C57BL6NJ_P0038165 Vcan protein_coding protein_coding MGP_C57BL6NJ_T0038229.1 MGP_C57BL6NJ_G0021205.1 mouse_genomes_project 13 96741662 96743264 - MGP_C57BL6NJ_P0038229 Spz1 protein_coding protein_coding MGP_C57BL6NJ_T0038653.1 MGP_C57BL6NJ_G0021350.1 mouse_genomes_project 13 123564239 123615183 + MGP_C57BL6NJ_P0038653 Emb protein_coding protein_coding MGP_C57BL6NJ_T0017811.1 MGP_C57BL6NJ_G0015643.1 mouse_genomes_project 13 21699477 21705286 - Gm11335 processed_transcript processed_transcript MGP_C57BL6NJ_T0006730.1 MGP_C57BL6NJ_G0005582.1 mouse_genomes_project 13 48590170 48591627 - A330048O09Rik lincRNA lincRNA MGP_C57BL6NJ_T0006793.1 MGP_C57BL6NJ_G0005621.1 mouse_genomes_project 13 103206155 103207017 - Gm29501 lincRNA lincRNA MGP_C57BL6NJ_T0037765.1 MGP_C57BL6NJ_G0021029.1 mouse_genomes_project 13 61269440 61286684 - MGP_C57BL6NJ_P0037765 Isca1 protein_coding protein_coding MGP_C57BL6NJ_T0037766.1 MGP_C57BL6NJ_G0021029.1 mouse_genomes_project 13 61276700 61286650 - Isca1 protein_coding retained_intron MGP_C57BL6NJ_T0038621.1 MGP_C57BL6NJ_G0021335.1 mouse_genomes_project 13 119221219 119279021 - MGP_C57BL6NJ_P0038621 Gzmk protein_coding protein_coding MGP_C57BL6NJ_T0038622.1 MGP_C57BL6NJ_G0021335.1 mouse_genomes_project 13 119221249 119230551 - MGP_C57BL6NJ_P0038622 Gzmk protein_coding protein_coding MGP_C57BL6NJ_T0038623.1 MGP_C57BL6NJ_G0021335.1 mouse_genomes_project 13 119221403 119230575 - MGP_C57BL6NJ_P0038623 Gzmk protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037377.1 MGP_C57BL6NJ_G0020917.1 mouse_genomes_project 13 49766527 49812107 + MGP_C57BL6NJ_P0037377 Bicd2 protein_coding protein_coding MGP_C57BL6NJ_T0037378.1 MGP_C57BL6NJ_G0020917.1 mouse_genomes_project 13 49766649 49812106 + MGP_C57BL6NJ_P0037378 Bicd2 protein_coding protein_coding MGP_C57BL6NJ_T0038403.1 MGP_C57BL6NJ_G0021268.1 mouse_genomes_project 13 105003803 105090556 - MGP_C57BL6NJ_P0038403 Naip2 protein_coding protein_coding MGP_C57BL6NJ_T0037688.1 MGP_C57BL6NJ_G0021014.1 mouse_genomes_project 13 59640657 59685113 - MGP_C57BL6NJ_P0037688 Gkap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037689.1 MGP_C57BL6NJ_G0021014.1 mouse_genomes_project 13 59640663 59685206 - MGP_C57BL6NJ_P0037689 Gkap1 protein_coding protein_coding MGP_C57BL6NJ_T0006707.1 MGP_C57BL6NJ_G0005566.1 mouse_genomes_project 13 31370625 31374407 - Gm11381 lincRNA lincRNA MGP_C57BL6NJ_T0013232.1 MGP_C57BL6NJ_G0011277.1 mouse_genomes_project 13 44402708 44403688 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006720.1 MGP_C57BL6NJ_G0005576.1 mouse_genomes_project 13 44066414 44071568 + Gm5083 lincRNA lincRNA MGP_C57BL6NJ_T0006721.1 MGP_C57BL6NJ_G0005576.1 mouse_genomes_project 13 44066541 44071568 + Gm5083 lincRNA lincRNA MGP_C57BL6NJ_T0013246.1 MGP_C57BL6NJ_G0011291.1 mouse_genomes_project 13 71998548 71999541 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010121.1 MGP_C57BL6NJ_G0008206.1 mouse_genomes_project 13 21896658 21896796 + Gm44350 miRNA miRNA MGP_C57BL6NJ_T0036829.1 MGP_C57BL6NJ_G0020663.1 mouse_genomes_project 13 19348405 19372846 - MGP_C57BL6NJ_P0036829 Pgbd1 protein_coding protein_coding MGP_C57BL6NJ_T0036830.1 MGP_C57BL6NJ_G0020663.1 mouse_genomes_project 13 19349905 19372765 - MGP_C57BL6NJ_P0036830 Pgbd1 protein_coding protein_coding MGP_C57BL6NJ_T0036831.1 MGP_C57BL6NJ_G0020663.1 mouse_genomes_project 13 19350324 19372655 - MGP_C57BL6NJ_P0036831 Pgbd1 protein_coding protein_coding MGP_C57BL6NJ_T0038255.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98362916 98511551 + MGP_C57BL6NJ_P0038255 Lhfpl2 protein_coding protein_coding MGP_C57BL6NJ_T0038256.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98362952 98436958 + Lhfpl2 protein_coding retained_intron MGP_C57BL6NJ_T0038257.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98395306 98489315 + MGP_C57BL6NJ_P0038257 Lhfpl2 protein_coding protein_coding MGP_C57BL6NJ_T0038258.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98447705 98489001 + MGP_C57BL6NJ_P0038258 Lhfpl2 protein_coding protein_coding MGP_C57BL6NJ_T0038259.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98487484 98510659 + MGP_C57BL6NJ_P0038259 Lhfpl2 protein_coding protein_coding MGP_C57BL6NJ_T0038260.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98488448 98488888 + Lhfpl2 protein_coding processed_transcript MGP_C57BL6NJ_T0038261.1 MGP_C57BL6NJ_G0021217.1 mouse_genomes_project 13 98488666 98511551 + MGP_C57BL6NJ_P0038261 Lhfpl2 protein_coding protein_coding MGP_C57BL6NJ_T0006755.1 MGP_C57BL6NJ_G0005598.1 mouse_genomes_project 13 70133845 70141469 + 9430065F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006756.1 MGP_C57BL6NJ_G0005598.1 mouse_genomes_project 13 70133874 70144499 + 9430065F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0017834.1 MGP_C57BL6NJ_G0015656.1 mouse_genomes_project 13 117743556 117744128 + processed_transcript processed_transcript MGP_C57BL6NJ_T0102802.1 MGP_C57BL6NJ_G0040596.1 mouse_genomes_project 13 20654339 20655064 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036600.1 MGP_C57BL6NJ_G0020582.1 mouse_genomes_project 13 347776 349202 - MGP_C57BL6NJ_P0036600 Calml3 protein_coding protein_coding MGP_C57BL6NJ_T0038405.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105425311 105457801 - MGP_C57BL6NJ_P0038405 Gtf2h2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038406.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105425500 105458002 - MGP_C57BL6NJ_P0038406 Gtf2h2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038407.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105433680 105458024 - MGP_C57BL6NJ_P0038407 Gtf2h2 protein_coding protein_coding MGP_C57BL6NJ_T0038408.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105433908 105457830 - Gtf2h2 protein_coding retained_intron MGP_C57BL6NJ_T0038409.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105433908 105458042 - MGP_C57BL6NJ_P0038409 Gtf2h2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038410.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105442552 105446182 - Gtf2h2 protein_coding processed_transcript MGP_C57BL6NJ_T0038411.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105444641 105447100 - Gtf2h2 protein_coding processed_transcript MGP_C57BL6NJ_T0038412.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105446979 105458042 - MGP_C57BL6NJ_P0038412 Gtf2h2 protein_coding protein_coding MGP_C57BL6NJ_T0038413.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105453162 105457837 - Gtf2h2 protein_coding retained_intron MGP_C57BL6NJ_T0038414.1 MGP_C57BL6NJ_G0021270.1 mouse_genomes_project 13 105454249 105458016 - Gtf2h2 protein_coding processed_transcript MGP_C57BL6NJ_T0006683.1 MGP_C57BL6NJ_G0005550.1 mouse_genomes_project 13 24276851 24289138 - Gm11351 lincRNA lincRNA MGP_C57BL6NJ_T0038687.1 MGP_C57BL6NJ_G0021366.1 mouse_genomes_project 13 126454369 126454858 - MGP_C57BL6NJ_P0038687 protein_coding protein_coding MGP_C57BL6NJ_T0017828.1 MGP_C57BL6NJ_G0015652.1 mouse_genomes_project 13 84268450 84269751 - 1700023H06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011608.1 MGP_C57BL6NJ_G0009693.1 mouse_genomes_project 13 14609152 14609440 - Gm26098 misc_RNA misc_RNA MGP_C57BL6NJ_T0003606.1 MGP_C57BL6NJ_G0003295.1 mouse_genomes_project 13 56754656 56757258 - Gm15911 antisense antisense MGP_C57BL6NJ_T0101182.1 MGP_C57BL6NJ_G0039228.1 mouse_genomes_project 13 57387824 57387947 + Gm25148 snoRNA snoRNA MGP_C57BL6NJ_T0036795.1 MGP_C57BL6NJ_G0020646.1 mouse_genomes_project 13 17420711 17449053 - MGP_C57BL6NJ_P0036795 Epdr1 protein_coding protein_coding MGP_C57BL6NJ_T0038673.1 MGP_C57BL6NJ_G0021357.1 mouse_genomes_project 13 126057226 126085058 + MGP_C57BL6NJ_P0038673 4833420G17Rik protein_coding protein_coding MGP_C57BL6NJ_T0037778.1 MGP_C57BL6NJ_G0021038.1 mouse_genomes_project 13 62486394 62489746 - MGP_C57BL6NJ_P0037778 Tpbpb protein_coding protein_coding MGP_C57BL6NJ_T0013262.1 MGP_C57BL6NJ_G0011307.1 mouse_genomes_project 13 93706556 93707157 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038067.1 MGP_C57BL6NJ_G0021173.1 mouse_genomes_project 13 81402842 81414435 - MGP_C57BL6NJ_P0038067 Nr2f1 protein_coding protein_coding MGP_C57BL6NJ_T0038068.1 MGP_C57BL6NJ_G0021173.1 mouse_genomes_project 13 81403021 81410905 - MGP_C57BL6NJ_P0038068 Nr2f1 protein_coding protein_coding MGP_C57BL6NJ_T0038069.1 MGP_C57BL6NJ_G0021173.1 mouse_genomes_project 13 81403538 81411797 - MGP_C57BL6NJ_P0038069 Nr2f1 protein_coding protein_coding MGP_C57BL6NJ_T0038070.1 MGP_C57BL6NJ_G0021173.1 mouse_genomes_project 13 81403599 81410240 - MGP_C57BL6NJ_P0038070 Nr2f1 protein_coding protein_coding MGP_C57BL6NJ_T0038071.1 MGP_C57BL6NJ_G0021173.1 mouse_genomes_project 13 81403738 81404310 - Nr2f1 protein_coding processed_transcript MGP_C57BL6NJ_T0006812.1 MGP_C57BL6NJ_G0005637.1 mouse_genomes_project 13 120760037 120853387 + 4930544M13Rik lincRNA lincRNA MGP_C57BL6NJ_T0006813.1 MGP_C57BL6NJ_G0005637.1 mouse_genomes_project 13 120760037 120810067 + 4930544M13Rik lincRNA lincRNA MGP_C57BL6NJ_T0099880.1 MGP_C57BL6NJ_G0037926.1 mouse_genomes_project 13 43310333 43310442 - Gm26064 snRNA snRNA MGP_C57BL6NJ_T0037773.1 MGP_C57BL6NJ_G0021034.1 mouse_genomes_project 13 62367878 62372350 - MGP_C57BL6NJ_P0037773 BC051665 protein_coding protein_coding MGP_C57BL6NJ_T0036723.1 MGP_C57BL6NJ_G0020618.1 mouse_genomes_project 13 9655230 9707246 - MGP_C57BL6NJ_P0036723 Edaradd protein_coding protein_coding MGP_C57BL6NJ_T0038144.1 MGP_C57BL6NJ_G0021184.1 mouse_genomes_project 13 89753038 89754683 - MGP_C57BL6NJ_P0038144 Cox7c protein_coding protein_coding MGP_C57BL6NJ_T0038145.1 MGP_C57BL6NJ_G0021184.1 mouse_genomes_project 13 89753038 89756274 - MGP_C57BL6NJ_P0038145 Cox7c protein_coding protein_coding MGP_C57BL6NJ_T0038146.1 MGP_C57BL6NJ_G0021184.1 mouse_genomes_project 13 89753043 89754570 - MGP_C57BL6NJ_P0038146 Cox7c protein_coding protein_coding MGP_C57BL6NJ_T0038147.1 MGP_C57BL6NJ_G0021184.1 mouse_genomes_project 13 89753117 89756144 - Cox7c protein_coding processed_transcript MGP_C57BL6NJ_T0003652.1 MGP_C57BL6NJ_G0003316.1 mouse_genomes_project 13 104969380 104970925 - BC001981 antisense antisense MGP_C57BL6NJ_T0003653.1 MGP_C57BL6NJ_G0003316.1 mouse_genomes_project 13 104970620 104970923 - BC001981 antisense antisense MGP_C57BL6NJ_T0006671.1 MGP_C57BL6NJ_G0005540.1 mouse_genomes_project 13 32400 37332 + lincRNA lincRNA MGP_C57BL6NJ_T0038006.1 MGP_C57BL6NJ_G0021148.1 mouse_genomes_project 13 77004854 77030625 - MGP_C57BL6NJ_P0038006 Cep72 protein_coding protein_coding MGP_C57BL6NJ_T0006810.1 MGP_C57BL6NJ_G0005635.1 mouse_genomes_project 13 117937922 117941885 + Gm15322 lincRNA lincRNA MGP_C57BL6NJ_T0036894.1 MGP_C57BL6NJ_G0020710.1 mouse_genomes_project 13 20582773 20583682 + MGP_C57BL6NJ_P0036894 Vmn1r204 protein_coding protein_coding MGP_C57BL6NJ_T0099002.1 MGP_C57BL6NJ_G0037066.1 mouse_genomes_project 13 122994305 122994396 + Gm23198 rRNA rRNA MGP_C57BL6NJ_T0036998.1 MGP_C57BL6NJ_G0020764.1 mouse_genomes_project 13 23093283 23105640 + MGP_C57BL6NJ_P0036998 BC005537 protein_coding protein_coding MGP_C57BL6NJ_T0036999.1 MGP_C57BL6NJ_G0020764.1 mouse_genomes_project 13 23093646 23104287 + MGP_C57BL6NJ_P0036999 BC005537 protein_coding protein_coding MGP_C57BL6NJ_T0036856.1 MGP_C57BL6NJ_G0020682.1 mouse_genomes_project 13 19712227 19712647 - MGP_C57BL6NJ_P0036856 Hist1h2ak protein_coding protein_coding MGP_C57BL6NJ_T0038619.1 MGP_C57BL6NJ_G0021333.1 mouse_genomes_project 13 119071223 119076670 - MGP_C57BL6NJ_P0038619 Gpx8 protein_coding protein_coding MGP_C57BL6NJ_T0010115.1 MGP_C57BL6NJ_G0008200.1 mouse_genomes_project 13 19321783 19321844 - Mir6942 miRNA miRNA MGP_C57BL6NJ_T0013228.1 MGP_C57BL6NJ_G0011273.1 mouse_genomes_project 13 32699995 32700342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038252.1 MGP_C57BL6NJ_G0021215.1 mouse_genomes_project 13 97932422 98026603 + MGP_C57BL6NJ_P0038252 Dmgdh protein_coding protein_coding MGP_C57BL6NJ_T0038253.1 MGP_C57BL6NJ_G0021215.1 mouse_genomes_project 13 97974290 97974918 + Dmgdh protein_coding processed_transcript MGP_C57BL6NJ_T0037676.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58764673 59280541 - MGP_C57BL6NJ_P0037676 Spock1 protein_coding protein_coding MGP_C57BL6NJ_T0037677.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58764685 59280502 - MGP_C57BL6NJ_P0037677 Spock1 protein_coding protein_coding MGP_C57BL6NJ_T0037678.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58769572 59280502 - MGP_C57BL6NJ_P0037678 Spock1 protein_coding protein_coding MGP_C57BL6NJ_T0037679.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58772191 59280518 - MGP_C57BL6NJ_P0037679 Spock1 protein_coding protein_coding MGP_C57BL6NJ_T0037680.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58772776 59279814 - MGP_C57BL6NJ_P0037680 Spock1 protein_coding protein_coding MGP_C57BL6NJ_T0037681.1 MGP_C57BL6NJ_G0021009.1 mouse_genomes_project 13 58777896 59280526 - Spock1 protein_coding retained_intron MGP_C57BL6NJ_T0001032.1 MGP_C57BL6NJ_G0000941.1 mouse_genomes_project 13 118184853 118186128 + TEC TEC MGP_C57BL6NJ_T0037009.1 MGP_C57BL6NJ_G0020769.1 mouse_genomes_project 13 23240032 23292039 + MGP_C57BL6NJ_P0037009 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037010.1 MGP_C57BL6NJ_G0020769.1 mouse_genomes_project 13 23257774 23264737 + protein_coding processed_transcript MGP_C57BL6NJ_T0037011.1 MGP_C57BL6NJ_G0020769.1 mouse_genomes_project 13 23281295 23292670 + MGP_C57BL6NJ_P0037011 protein_coding protein_coding MGP_C57BL6NJ_T0036797.1 MGP_C57BL6NJ_G0020648.1 mouse_genomes_project 13 17475324 17527413 - MGP_C57BL6NJ_P0036797 Nme8 protein_coding protein_coding MGP_C57BL6NJ_T0036798.1 MGP_C57BL6NJ_G0020648.1 mouse_genomes_project 13 17475324 17527447 - MGP_C57BL6NJ_P0036798 Nme8 protein_coding protein_coding MGP_C57BL6NJ_T0036799.1 MGP_C57BL6NJ_G0020648.1 mouse_genomes_project 13 17505102 17519275 - Nme8 protein_coding processed_transcript MGP_C57BL6NJ_T0038375.1 MGP_C57BL6NJ_G0021259.1 mouse_genomes_project 13 103959712 104026847 + MGP_C57BL6NJ_P0038375 Zfp366 protein_coding protein_coding MGP_C57BL6NJ_T0037306.1 MGP_C57BL6NJ_G0020896.1 mouse_genomes_project 13 46654859 46808839 + MGP_C57BL6NJ_P0037306 Cap2 protein_coding protein_coding MGP_C57BL6NJ_T0037307.1 MGP_C57BL6NJ_G0020896.1 mouse_genomes_project 13 46655136 46808832 + MGP_C57BL6NJ_P0037307 Cap2 protein_coding protein_coding MGP_C57BL6NJ_T0037308.1 MGP_C57BL6NJ_G0020896.1 mouse_genomes_project 13 46798551 46805769 + Cap2 protein_coding processed_transcript MGP_C57BL6NJ_T0101162.1 MGP_C57BL6NJ_G0039208.1 mouse_genomes_project 13 5862519 5862638 + snoRNA snoRNA MGP_C57BL6NJ_T0102833.1 MGP_C57BL6NJ_G0040627.1 mouse_genomes_project 13 42734006 42734895 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0038267.1 MGP_C57BL6NJ_G0021221.1 mouse_genomes_project 13 99140758 99199088 + MGP_C57BL6NJ_P0038267 Tbca protein_coding protein_coding MGP_C57BL6NJ_T0037273.1 MGP_C57BL6NJ_G0020884.1 mouse_genomes_project 13 43436387 43460715 - MGP_C57BL6NJ_P0037273 Mcur1 protein_coding protein_coding MGP_C57BL6NJ_T0038646.1 MGP_C57BL6NJ_G0021347.1 mouse_genomes_project 13 122600049 122611356 - MGP_C57BL6NJ_P0038646 Isl1 protein_coding protein_coding MGP_C57BL6NJ_T0038647.1 MGP_C57BL6NJ_G0021347.1 mouse_genomes_project 13 122601031 122611089 - MGP_C57BL6NJ_P0038647 Isl1 protein_coding protein_coding MGP_C57BL6NJ_T0038648.1 MGP_C57BL6NJ_G0021347.1 mouse_genomes_project 13 122601163 122605102 - Isl1 protein_coding retained_intron MGP_C57BL6NJ_T0038649.1 MGP_C57BL6NJ_G0021347.1 mouse_genomes_project 13 122604796 122608072 - Isl1 protein_coding processed_transcript MGP_C57BL6NJ_T0038650.1 MGP_C57BL6NJ_G0021347.1 mouse_genomes_project 13 122608565 122611352 - Isl1 protein_coding retained_intron MGP_C57BL6NJ_T0037817.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65546550 65603460 - MGP_C57BL6NJ_P0037817 Ptch1 protein_coding protein_coding MGP_C57BL6NJ_T0037818.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65546551 65612202 - MGP_C57BL6NJ_P0037818 Ptch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037819.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65552022 65552753 - Ptch1 protein_coding retained_intron MGP_C57BL6NJ_T0037820.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65556325 65601755 - MGP_C57BL6NJ_P0037820 Ptch1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037821.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65581168 65603214 - MGP_C57BL6NJ_P0037821 Ptch1 protein_coding protein_coding MGP_C57BL6NJ_T0037822.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65581168 65602266 - MGP_C57BL6NJ_P0037822 Ptch1 protein_coding protein_coding MGP_C57BL6NJ_T0037823.1 MGP_C57BL6NJ_G0021058.1 mouse_genomes_project 13 65581168 65612340 - MGP_C57BL6NJ_P0037823 Ptch1 protein_coding protein_coding MGP_C57BL6NJ_T0013266.1 MGP_C57BL6NJ_G0011311.1 mouse_genomes_project 13 105772146 105785477 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037916.1 MGP_C57BL6NJ_G0021104.1 mouse_genomes_project 13 70090179 70100576 - MGP_C57BL6NJ_P0037916 Zfp87 protein_coding protein_coding MGP_C57BL6NJ_T0037917.1 MGP_C57BL6NJ_G0021104.1 mouse_genomes_project 13 70091974 70100520 - MGP_C57BL6NJ_P0037917 Zfp87 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037918.1 MGP_C57BL6NJ_G0021104.1 mouse_genomes_project 13 70092379 70100545 - MGP_C57BL6NJ_P0037918 Zfp87 protein_coding protein_coding MGP_C57BL6NJ_T0037919.1 MGP_C57BL6NJ_G0021104.1 mouse_genomes_project 13 70095437 70100576 - MGP_C57BL6NJ_P0037919 Zfp87 protein_coding protein_coding MGP_C57BL6NJ_T0037927.1 MGP_C57BL6NJ_G0021109.1 mouse_genomes_project 13 70290565 70323777 - MGP_C57BL6NJ_P0037927 Zfp65 protein_coding protein_coding MGP_C57BL6NJ_T0037928.1 MGP_C57BL6NJ_G0021109.1 mouse_genomes_project 13 70293071 70305107 - MGP_C57BL6NJ_P0037928 Zfp65 protein_coding protein_coding MGP_C57BL6NJ_T0036901.1 MGP_C57BL6NJ_G0020717.1 mouse_genomes_project 13 21095678 21096833 + MGP_C57BL6NJ_P0036901 Vmn1r213 protein_coding protein_coding MGP_C57BL6NJ_T0010119.1 MGP_C57BL6NJ_G0008204.1 mouse_genomes_project 13 19920013 19920102 - Gm44456 miRNA miRNA MGP_C57BL6NJ_T0037022.1 MGP_C57BL6NJ_G0020774.1 mouse_genomes_project 13 25506604 25514193 + MGP_C57BL6NJ_P0037022 Prl protein_coding protein_coding MGP_C57BL6NJ_T0006706.1 MGP_C57BL6NJ_G0005565.1 mouse_genomes_project 13 30545564 30546766 + Gm11378 lincRNA lincRNA MGP_C57BL6NJ_T0036823.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19309586 19327958 - MGP_C57BL6NJ_P0036823 Zkscan3 protein_coding protein_coding MGP_C57BL6NJ_T0036824.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19309586 19328000 - MGP_C57BL6NJ_P0036824 Zkscan3 protein_coding protein_coding MGP_C57BL6NJ_T0036825.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19311286 19319235 - MGP_C57BL6NJ_P0036825 Zkscan3 protein_coding protein_coding MGP_C57BL6NJ_T0036826.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19312880 19327940 - MGP_C57BL6NJ_P0036826 Zkscan3 protein_coding protein_coding MGP_C57BL6NJ_T0036827.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19317703 19327961 - MGP_C57BL6NJ_P0036827 Zkscan3 protein_coding protein_coding MGP_C57BL6NJ_T0036828.1 MGP_C57BL6NJ_G0020662.1 mouse_genomes_project 13 19326754 19327915 - Zkscan3 protein_coding processed_transcript MGP_C57BL6NJ_T0036613.1 MGP_C57BL6NJ_G0020590.1 mouse_genomes_project 13 753434 765617 + MGP_C57BL6NJ_P0036613 Akr1c13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036614.1 MGP_C57BL6NJ_G0020590.1 mouse_genomes_project 13 753437 772666 + MGP_C57BL6NJ_P0036614 Akr1c13 protein_coding protein_coding MGP_C57BL6NJ_T0036615.1 MGP_C57BL6NJ_G0020590.1 mouse_genomes_project 13 753477 772453 + MGP_C57BL6NJ_P0036615 Akr1c13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036616.1 MGP_C57BL6NJ_G0020590.1 mouse_genomes_project 13 760061 761934 + Akr1c13 protein_coding processed_transcript MGP_C57BL6NJ_T0037956.1 MGP_C57BL6NJ_G0021125.1 mouse_genomes_project 13 72500787 72506996 + MGP_C57BL6NJ_P0037956 Med10 protein_coding protein_coding MGP_C57BL6NJ_T0037114.1 MGP_C57BL6NJ_G0020824.1 mouse_genomes_project 13 32822807 32834554 + MGP_C57BL6NJ_P0037114 Serpinb6d protein_coding protein_coding MGP_C57BL6NJ_T0099872.1 MGP_C57BL6NJ_G0037918.1 mouse_genomes_project 13 23226142 23226245 - Gm22165 snRNA snRNA MGP_C57BL6NJ_T0037215.1 MGP_C57BL6NJ_G0020859.1 mouse_genomes_project 13 38526561 38555979 - MGP_C57BL6NJ_P0037215 Slc35b3 protein_coding protein_coding MGP_C57BL6NJ_T0037216.1 MGP_C57BL6NJ_G0020859.1 mouse_genomes_project 13 38526561 38556317 - MGP_C57BL6NJ_P0037216 Slc35b3 protein_coding protein_coding MGP_C57BL6NJ_T0038097.1 MGP_C57BL6NJ_G0021179.1 mouse_genomes_project 13 85232652 85247869 + MGP_C57BL6NJ_P0038097 Cetn3 protein_coding protein_coding MGP_C57BL6NJ_T0037029.1 MGP_C57BL6NJ_G0020779.1 mouse_genomes_project 13 25727246 25734321 + MGP_C57BL6NJ_P0037029 Prl3b1 protein_coding protein_coding MGP_C57BL6NJ_T0002728.1 MGP_C57BL6NJ_G0002606.1 mouse_genomes_project 13 16997881 16998455 + MGP_C57BL6NJ_P0002728 Tcrg-V6 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002729.1 MGP_C57BL6NJ_G0002606.1 mouse_genomes_project 13 16997893 16998455 + MGP_C57BL6NJ_P0002729 Tcrg-V6 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0037040.1 MGP_C57BL6NJ_G0020785.1 mouse_genomes_project 13 26025924 26032876 - MGP_C57BL6NJ_P0037040 Prl8a8 protein_coding protein_coding MGP_C57BL6NJ_T0037041.1 MGP_C57BL6NJ_G0020785.1 mouse_genomes_project 13 26026028 26032874 - MGP_C57BL6NJ_P0037041 Prl8a8 protein_coding protein_coding MGP_C57BL6NJ_T0013182.1 MGP_C57BL6NJ_G0011227.1 mouse_genomes_project 13 6135569 6135720 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036947.1 MGP_C57BL6NJ_G0020752.1 mouse_genomes_project 13 22008513 22017437 + MGP_C57BL6NJ_P0036947 Trim38 protein_coding protein_coding MGP_C57BL6NJ_T0037848.1 MGP_C57BL6NJ_G0021066.1 mouse_genomes_project 13 66459208 66466354 - MGP_C57BL6NJ_P0037848 Ctsl protein_coding protein_coding MGP_C57BL6NJ_T0037425.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52495303 52601307 - MGP_C57BL6NJ_P0037425 Sema4d protein_coding protein_coding MGP_C57BL6NJ_T0037426.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52495303 52601381 - MGP_C57BL6NJ_P0037426 Sema4d protein_coding protein_coding MGP_C57BL6NJ_T0037427.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52495307 52535057 - MGP_C57BL6NJ_P0037427 Sema4d protein_coding protein_coding MGP_C57BL6NJ_T0037428.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52506344 52510509 - Sema4d protein_coding retained_intron MGP_C57BL6NJ_T0037429.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52521580 52550307 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037430.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52521580 52550203 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037431.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523150 52553549 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037432.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523197 52556149 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037433.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523217 52558186 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037434.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523240 52558052 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037435.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523267 52550114 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037436.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523316 52583972 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0037437.1 MGP_C57BL6NJ_G0020938.1 mouse_genomes_project 13 52523349 52601298 - Sema4d protein_coding processed_transcript MGP_C57BL6NJ_T0038044.1 MGP_C57BL6NJ_G0021166.1 mouse_genomes_project 13 79184126 79217587 - MGP_C57BL6NJ_P0038044 Arsk protein_coding protein_coding MGP_C57BL6NJ_T0038045.1 MGP_C57BL6NJ_G0021166.1 mouse_genomes_project 13 79196505 79217599 - Arsk protein_coding retained_intron MGP_C57BL6NJ_T0037578.1 MGP_C57BL6NJ_G0020971.1 mouse_genomes_project 13 56266654 56284348 + MGP_C57BL6NJ_P0037578 Fgfr4 protein_coding protein_coding MGP_C57BL6NJ_T0037579.1 MGP_C57BL6NJ_G0020971.1 mouse_genomes_project 13 56269697 56270670 + Fgfr4 protein_coding processed_transcript MGP_C57BL6NJ_T0037580.1 MGP_C57BL6NJ_G0020971.1 mouse_genomes_project 13 56270131 56270919 + Fgfr4 protein_coding retained_intron MGP_C57BL6NJ_T0001005.1 MGP_C57BL6NJ_G0000915.1 mouse_genomes_project 13 36974182 36974523 - TEC TEC MGP_C57BL6NJ_T0037983.1 MGP_C57BL6NJ_G0021138.1 mouse_genomes_project 13 76559081 76584541 + MGP_C57BL6NJ_P0037983 Tert protein_coding protein_coding MGP_C57BL6NJ_T0102823.1 MGP_C57BL6NJ_G0040617.1 mouse_genomes_project 13 31974573 31974741 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036937.1 MGP_C57BL6NJ_G0020744.1 mouse_genomes_project 13 21918435 21925285 - MGP_C57BL6NJ_P0036937 Hfe protein_coding protein_coding MGP_C57BL6NJ_T0036938.1 MGP_C57BL6NJ_G0020744.1 mouse_genomes_project 13 21918979 21925285 - MGP_C57BL6NJ_P0036938 Hfe protein_coding protein_coding MGP_C57BL6NJ_T0036939.1 MGP_C57BL6NJ_G0020744.1 mouse_genomes_project 13 21918979 21925285 - MGP_C57BL6NJ_P0036939 Hfe protein_coding protein_coding MGP_C57BL6NJ_T0037686.1 MGP_C57BL6NJ_G0021013.1 mouse_genomes_project 13 59583122 59622547 - MGP_C57BL6NJ_P0037686 Ubqln1 protein_coding protein_coding MGP_C57BL6NJ_T0037687.1 MGP_C57BL6NJ_G0021013.1 mouse_genomes_project 13 59583122 59622547 - MGP_C57BL6NJ_P0037687 Ubqln1 protein_coding protein_coding MGP_C57BL6NJ_T0013256.1 MGP_C57BL6NJ_G0011301.1 mouse_genomes_project 13 87943402 87944367 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036844.1 MGP_C57BL6NJ_G0020672.1 mouse_genomes_project 13 19514626 19525352 - MGP_C57BL6NJ_P0036844 Olfr1364 protein_coding protein_coding MGP_C57BL6NJ_T0036845.1 MGP_C57BL6NJ_G0020672.1 mouse_genomes_project 13 19514626 19515571 - MGP_C57BL6NJ_P0036845 Olfr1364 protein_coding protein_coding MGP_C57BL6NJ_T0037237.1 MGP_C57BL6NJ_G0020869.1 mouse_genomes_project 13 40922847 40960655 - MGP_C57BL6NJ_P0037237 Elovl2 protein_coding protein_coding MGP_C57BL6NJ_T0037238.1 MGP_C57BL6NJ_G0020869.1 mouse_genomes_project 13 40922851 40960412 - MGP_C57BL6NJ_P0037238 Elovl2 protein_coding protein_coding MGP_C57BL6NJ_T0038652.1 MGP_C57BL6NJ_G0021349.1 mouse_genomes_project 13 123562315 123564690 - MGP_C57BL6NJ_P0038652 Gm17509 protein_coding protein_coding MGP_C57BL6NJ_T0102828.1 MGP_C57BL6NJ_G0040622.1 mouse_genomes_project 13 32884065 32887845 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036855.1 MGP_C57BL6NJ_G0020681.1 mouse_genomes_project 13 19708886 19709298 - MGP_C57BL6NJ_P0036855 Hist1h4k protein_coding protein_coding MGP_C57BL6NJ_T0010118.1 MGP_C57BL6NJ_G0008203.1 mouse_genomes_project 13 19888613 19888745 - Mir1983 miRNA miRNA MGP_C57BL6NJ_T0036908.1 MGP_C57BL6NJ_G0020724.1 mouse_genomes_project 13 21308698 21309595 - MGP_C57BL6NJ_P0036908 Vmn1r220 protein_coding protein_coding MGP_C57BL6NJ_T0037386.1 MGP_C57BL6NJ_G0020924.1 mouse_genomes_project 13 50106774 50133898 + MGP_C57BL6NJ_P0037386 Nol8 protein_coding protein_coding MGP_C57BL6NJ_T0036903.1 MGP_C57BL6NJ_G0020719.1 mouse_genomes_project 13 21170442 21171345 + MGP_C57BL6NJ_P0036903 Vmn1r215 protein_coding protein_coding MGP_C57BL6NJ_T0037624.1 MGP_C57BL6NJ_G0020989.1 mouse_genomes_project 13 56752371 56762918 + MGP_C57BL6NJ_P0037624 B4galt7 protein_coding protein_coding MGP_C57BL6NJ_T0037625.1 MGP_C57BL6NJ_G0020989.1 mouse_genomes_project 13 56752540 56760493 + B4galt7 protein_coding retained_intron MGP_C57BL6NJ_T0037626.1 MGP_C57BL6NJ_G0020989.1 mouse_genomes_project 13 56752540 56761277 + MGP_C57BL6NJ_P0037626 B4galt7 protein_coding protein_coding MGP_C57BL6NJ_T0037627.1 MGP_C57BL6NJ_G0020989.1 mouse_genomes_project 13 56752540 56762917 + MGP_C57BL6NJ_P0037627 B4galt7 protein_coding protein_coding MGP_C57BL6NJ_T0101187.1 MGP_C57BL6NJ_G0039233.1 mouse_genomes_project 13 78799429 78799512 + Gm23012 snoRNA snoRNA MGP_C57BL6NJ_T0036821.1 MGP_C57BL6NJ_G0020661.1 mouse_genomes_project 13 19269808 19276806 + MGP_C57BL6NJ_P0036821 Zscan12 protein_coding protein_coding MGP_C57BL6NJ_T0036822.1 MGP_C57BL6NJ_G0020661.1 mouse_genomes_project 13 19270266 19276806 + MGP_C57BL6NJ_P0036822 Zscan12 protein_coding protein_coding MGP_C57BL6NJ_T0036900.1 MGP_C57BL6NJ_G0020716.1 mouse_genomes_project 13 20965390 20967797 - MGP_C57BL6NJ_P0036900 Vmn1r212 protein_coding protein_coding MGP_C57BL6NJ_T0011603.1 MGP_C57BL6NJ_G0009688.1 mouse_genomes_project 13 6104393 6104688 + Gm23553 misc_RNA misc_RNA MGP_C57BL6NJ_T0002642.1 MGP_C57BL6NJ_G0002526.1 mouse_genomes_project 13 17124373 17124433 - MGP_C57BL6NJ_P0002642 Trgj3 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0003607.1 MGP_C57BL6NJ_G0003296.1 mouse_genomes_project 13 56945641 56952184 - 4930451E10Rik antisense antisense MGP_C57BL6NJ_T0003608.1 MGP_C57BL6NJ_G0003296.1 mouse_genomes_project 13 56946445 56952169 - 4930451E10Rik antisense antisense MGP_C57BL6NJ_T0003609.1 MGP_C57BL6NJ_G0003296.1 mouse_genomes_project 13 56946452 56952195 - 4930451E10Rik antisense antisense MGP_C57BL6NJ_T0002641.1 MGP_C57BL6NJ_G0002525.1 mouse_genomes_project 13 17020362 17020422 + MGP_C57BL6NJ_P0002641 Trgj1 TR_J_gene TR_J_gene MGP_C57BL6NJ_T0006732.1 MGP_C57BL6NJ_G0005584.1 mouse_genomes_project 13 49363777 49367452 + Fam120aos lincRNA lincRNA MGP_C57BL6NJ_T0038135.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88866701 88952250 - MGP_C57BL6NJ_P0038135 protein_coding protein_coding MGP_C57BL6NJ_T0038136.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88867736 88870273 - protein_coding retained_intron MGP_C57BL6NJ_T0038137.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88867973 88873623 - protein_coding retained_intron MGP_C57BL6NJ_T0038138.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88873292 88878617 - protein_coding retained_intron MGP_C57BL6NJ_T0038139.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88876123 88877927 - protein_coding retained_intron MGP_C57BL6NJ_T0038140.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88880593 88886872 - protein_coding retained_intron MGP_C57BL6NJ_T0038141.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88881186 88882374 - protein_coding retained_intron MGP_C57BL6NJ_T0038142.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88894010 88902992 - protein_coding retained_intron MGP_C57BL6NJ_T0038143.1 MGP_C57BL6NJ_G0021183.1 mouse_genomes_project 13 88900036 88906661 - protein_coding retained_intron MGP_C57BL6NJ_T0037852.1 MGP_C57BL6NJ_G0021070.1 mouse_genomes_project 13 67053248 67059027 + MGP_C57BL6NJ_P0037852 Spata31 protein_coding protein_coding MGP_C57BL6NJ_T0102815.1 MGP_C57BL6NJ_G0040609.1 mouse_genomes_project 13 21154685 21155611 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010167.1 MGP_C57BL6NJ_G0008252.1 mouse_genomes_project 13 113400221 113400392 - Gm22118 miRNA miRNA MGP_C57BL6NJ_T0006687.1 MGP_C57BL6NJ_G0005553.1 mouse_genomes_project 13 27683251 27692060 + Gm26735 lincRNA lincRNA MGP_C57BL6NJ_T0006766.1 MGP_C57BL6NJ_G0005604.1 mouse_genomes_project 13 82559844 82574228 + Gm29318 lincRNA lincRNA MGP_C57BL6NJ_T0102807.1 MGP_C57BL6NJ_G0040601.1 mouse_genomes_project 13 20924067 20925107 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006678.1 MGP_C57BL6NJ_G0005546.1 mouse_genomes_project 13 21594063 21597111 - C230035I16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006679.1 MGP_C57BL6NJ_G0005546.1 mouse_genomes_project 13 21594195 21596915 - C230035I16Rik lincRNA lincRNA MGP_C57BL6NJ_T0036906.1 MGP_C57BL6NJ_G0020722.1 mouse_genomes_project 13 21257377 21258274 + MGP_C57BL6NJ_P0036906 Vmn1r218 protein_coding protein_coding MGP_C57BL6NJ_T0036596.1 MGP_C57BL6NJ_G0020581.1 mouse_genomes_project 13 182920 201569 + MGP_C57BL6NJ_P0036596 Asb13 protein_coding protein_coding MGP_C57BL6NJ_T0036597.1 MGP_C57BL6NJ_G0020581.1 mouse_genomes_project 13 182977 183671 + Asb13 protein_coding processed_transcript MGP_C57BL6NJ_T0036598.1 MGP_C57BL6NJ_G0020581.1 mouse_genomes_project 13 182986 200285 + Asb13 protein_coding processed_transcript MGP_C57BL6NJ_T0036599.1 MGP_C57BL6NJ_G0020581.1 mouse_genomes_project 13 182987 192155 + Asb13 protein_coding retained_intron MGP_C57BL6NJ_T0037346.1 MGP_C57BL6NJ_G0020907.1 mouse_genomes_project 13 48847002 48848292 + MGP_C57BL6NJ_P0037346 A830005F24Rik protein_coding protein_coding MGP_C57BL6NJ_T0037073.1 MGP_C57BL6NJ_G0020800.1 mouse_genomes_project 13 29396305 29401355 - MGP_C57BL6NJ_P0037073 Uqcrfs1 protein_coding protein_coding MGP_C57BL6NJ_T0006775.1 MGP_C57BL6NJ_G0005610.1 mouse_genomes_project 13 87280912 87288672 - Gm26803 lincRNA lincRNA MGP_C57BL6NJ_T0010122.1 MGP_C57BL6NJ_G0008207.1 mouse_genomes_project 13 21968839 21968977 + Gm44314 miRNA miRNA MGP_C57BL6NJ_T0006806.1 MGP_C57BL6NJ_G0005632.1 mouse_genomes_project 13 117787907 117790214 - Gm15325 lincRNA lincRNA MGP_C57BL6NJ_T0036730.1 MGP_C57BL6NJ_G0020625.1 mouse_genomes_project 13 11318918 11347476 + Gng4 protein_coding processed_transcript MGP_C57BL6NJ_T0036731.1 MGP_C57BL6NJ_G0020625.1 mouse_genomes_project 13 11319188 11369055 + MGP_C57BL6NJ_P0036731 Gng4 protein_coding protein_coding MGP_C57BL6NJ_T0036625.1 MGP_C57BL6NJ_G0020594.1 mouse_genomes_project 13 1078150 1112601 - MGP_C57BL6NJ_P0036625 Akr1c20 protein_coding protein_coding MGP_C57BL6NJ_T0036626.1 MGP_C57BL6NJ_G0020594.1 mouse_genomes_project 13 1096603 1112616 - MGP_C57BL6NJ_P0036626 Akr1c20 protein_coding protein_coding MGP_C57BL6NJ_T0038015.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77303324 77333605 - MGP_C57BL6NJ_P0038015 Sdha protein_coding protein_coding MGP_C57BL6NJ_T0038016.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77303802 77305327 - Sdha protein_coding retained_intron MGP_C57BL6NJ_T0038017.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77309014 77310191 - Sdha protein_coding retained_intron MGP_C57BL6NJ_T0038018.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77319201 77333527 - Sdha protein_coding processed_transcript MGP_C57BL6NJ_T0038019.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77320712 77321476 - Sdha protein_coding retained_intron MGP_C57BL6NJ_T0038020.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77324961 77333564 - Sdha protein_coding retained_intron MGP_C57BL6NJ_T0038021.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77326597 77333482 - Sdha protein_coding processed_transcript MGP_C57BL6NJ_T0038022.1 MGP_C57BL6NJ_G0021153.1 mouse_genomes_project 13 77326636 77333560 - Sdha protein_coding processed_transcript MGP_C57BL6NJ_T0101192.1 MGP_C57BL6NJ_G0039238.1 mouse_genomes_project 13 80854196 80854327 + Gm26088 snoRNA snoRNA MGP_C57BL6NJ_T0037582.1 MGP_C57BL6NJ_G0020973.1 mouse_genomes_project 13 56443349 56446107 - MGP_C57BL6NJ_P0037582 Rab24 protein_coding protein_coding MGP_C57BL6NJ_T0037493.1 MGP_C57BL6NJ_G0020956.1 mouse_genomes_project 13 55645100 55651009 - MGP_C57BL6NJ_P0037493 Nop16 protein_coding protein_coding MGP_C57BL6NJ_T0037494.1 MGP_C57BL6NJ_G0020956.1 mouse_genomes_project 13 55645451 55650977 - MGP_C57BL6NJ_P0037494 Nop16 protein_coding protein_coding MGP_C57BL6NJ_T0037495.1 MGP_C57BL6NJ_G0020956.1 mouse_genomes_project 13 55646154 55650895 - MGP_C57BL6NJ_P0037495 Nop16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037957.1 MGP_C57BL6NJ_G0021126.1 mouse_genomes_project 13 73334931 73386241 - MGP_C57BL6NJ_P0037957 Ice1 protein_coding protein_coding MGP_C57BL6NJ_T0037787.1 MGP_C57BL6NJ_G0021046.1 mouse_genomes_project 13 63025512 63032612 - MGP_C57BL6NJ_P0037787 Cts7 protein_coding protein_coding MGP_C57BL6NJ_T0102797.1 MGP_C57BL6NJ_G0040591.1 mouse_genomes_project 13 20476607 20477378 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037385.1 MGP_C57BL6NJ_G0020923.1 mouse_genomes_project 13 50051124 50067554 + MGP_C57BL6NJ_P0037385 Ogn protein_coding protein_coding MGP_C57BL6NJ_T0038380.1 MGP_C57BL6NJ_G0021263.1 mouse_genomes_project 13 104721773 104725773 - MGP_C57BL6NJ_P0038380 Cartpt protein_coding protein_coding MGP_C57BL6NJ_T0017821.1 MGP_C57BL6NJ_G0015647.1 mouse_genomes_project 13 33845699 33859550 + Gm15908 processed_transcript processed_transcript MGP_C57BL6NJ_T0101179.1 MGP_C57BL6NJ_G0039225.1 mouse_genomes_project 13 50139172 50139305 + Gm25394 snoRNA snoRNA MGP_C57BL6NJ_T0036713.1 MGP_C57BL6NJ_G0020614.1 mouse_genomes_project 13 9347927 9423659 - MGP_C57BL6NJ_P0036713 Mtr protein_coding protein_coding MGP_C57BL6NJ_T0037350.1 MGP_C57BL6NJ_G0020911.1 mouse_genomes_project 13 49263225 49361093 - MGP_C57BL6NJ_P0037350 Fam120a protein_coding protein_coding MGP_C57BL6NJ_T0006785.1 MGP_C57BL6NJ_G0005617.1 mouse_genomes_project 13 101865674 101868427 + C430039J16Rik lincRNA lincRNA MGP_C57BL6NJ_T0038248.1 MGP_C57BL6NJ_G0021212.1 mouse_genomes_project 13 97656134 97729190 - MGP_C57BL6NJ_P0038248 Jmy protein_coding protein_coding MGP_C57BL6NJ_T0038425.1 MGP_C57BL6NJ_G0021275.1 mouse_genomes_project 13 105634222 105640772 + MGP_C57BL6NJ_P0038425 protein_coding protein_coding MGP_C57BL6NJ_T0038127.1 MGP_C57BL6NJ_G0021181.1 mouse_genomes_project 13 87822699 87900285 + MGP_C57BL6NJ_P0038127 Tmem161b protein_coding protein_coding MGP_C57BL6NJ_T0037251.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42533138 43015687 + MGP_C57BL6NJ_P0037251 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037252.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42533314 42828794 + Phactr1 protein_coding retained_intron MGP_C57BL6NJ_T0037253.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42534028 43012412 + MGP_C57BL6NJ_P0037253 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037254.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42535213 43012356 + MGP_C57BL6NJ_P0037254 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037255.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42563889 43012564 + MGP_C57BL6NJ_P0037255 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037256.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42563927 43015689 + MGP_C57BL6NJ_P0037256 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037257.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42730454 43012471 + MGP_C57BL6NJ_P0037257 Phactr1 protein_coding protein_coding MGP_C57BL6NJ_T0037258.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42732502 42826568 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037259.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 42987929 43012546 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037260.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43000099 43012574 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037261.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43000114 43012522 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037262.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43003050 43012416 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037263.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43003050 43012416 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037264.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43003082 43012416 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037265.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43010163 43011409 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0037266.1 MGP_C57BL6NJ_G0020878.1 mouse_genomes_project 13 43012546 43015676 + Phactr1 protein_coding processed_transcript MGP_C57BL6NJ_T0003622.1 MGP_C57BL6NJ_G0003302.1 mouse_genomes_project 13 70406833 70440874 - 4930525G20Rik antisense antisense MGP_C57BL6NJ_T0037468.1 MGP_C57BL6NJ_G0020949.1 mouse_genomes_project 13 55085075 55131758 + MGP_C57BL6NJ_P0037468 Sfxn1 protein_coding protein_coding MGP_C57BL6NJ_T0010166.1 MGP_C57BL6NJ_G0008251.1 mouse_genomes_project 13 103297618 103297726 + Gm22698 miRNA miRNA MGP_C57BL6NJ_T0037176.1 MGP_C57BL6NJ_G0020842.1 mouse_genomes_project 13 35233668 35248542 - MGP_C57BL6NJ_P0037176 Rpp40 protein_coding protein_coding MGP_C57BL6NJ_T0037177.1 MGP_C57BL6NJ_G0020842.1 mouse_genomes_project 13 35236900 35241107 - MGP_C57BL6NJ_P0037177 Rpp40 protein_coding protein_coding MGP_C57BL6NJ_T0037178.1 MGP_C57BL6NJ_G0020842.1 mouse_genomes_project 13 35236908 35248511 - Rpp40 protein_coding retained_intron MGP_C57BL6NJ_T0037179.1 MGP_C57BL6NJ_G0020842.1 mouse_genomes_project 13 35236911 35248527 - MGP_C57BL6NJ_P0037179 Rpp40 protein_coding protein_coding MGP_C57BL6NJ_T0037000.1 MGP_C57BL6NJ_G0020765.1 mouse_genomes_project 13 23109625 23123021 - MGP_C57BL6NJ_P0037000 Acot13 protein_coding protein_coding MGP_C57BL6NJ_T0010125.1 MGP_C57BL6NJ_G0008210.1 mouse_genomes_project 13 27421052 27421145 - Mir6368 miRNA miRNA MGP_C57BL6NJ_T0099871.1 MGP_C57BL6NJ_G0037917.1 mouse_genomes_project 13 22751560 22751663 - Gm22013 snRNA snRNA MGP_C57BL6NJ_T0038363.1 MGP_C57BL6NJ_G0021254.1 mouse_genomes_project 13 103381423 103383856 - MGP_C57BL6NJ_P0038363 Tmem174 protein_coding protein_coding MGP_C57BL6NJ_T0001018.1 MGP_C57BL6NJ_G0000927.1 mouse_genomes_project 13 87293778 87297605 - TEC TEC MGP_C57BL6NJ_T0037180.1 MGP_C57BL6NJ_G0020843.1 mouse_genomes_project 13 35307064 35319954 + Ppp1r3g protein_coding processed_transcript MGP_C57BL6NJ_T0037181.1 MGP_C57BL6NJ_G0020843.1 mouse_genomes_project 13 35319482 35322018 + MGP_C57BL6NJ_P0037181 Ppp1r3g protein_coding protein_coding MGP_C57BL6NJ_T0037971.1 MGP_C57BL6NJ_G0021132.1 mouse_genomes_project 13 76210324 76210595 + MGP_C57BL6NJ_P0037971 Gm10263 protein_coding protein_coding MGP_C57BL6NJ_T0038345.1 MGP_C57BL6NJ_G0021247.1 mouse_genomes_project 13 102573374 102915233 - MGP_C57BL6NJ_P0038345 Arhgef28 protein_coding protein_coding MGP_C57BL6NJ_T0010129.1 MGP_C57BL6NJ_G0008214.1 mouse_genomes_project 13 42471744 42473636 + miRNA miRNA MGP_C57BL6NJ_T0037042.1 MGP_C57BL6NJ_G0020786.1 mouse_genomes_project 13 26070645 26077685 - MGP_C57BL6NJ_P0037042 Prl8a9 protein_coding protein_coding MGP_C57BL6NJ_T0036787.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17166895 17177165 - Stard3nl protein_coding retained_intron MGP_C57BL6NJ_T0036788.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17166898 17168345 - Stard3nl protein_coding retained_intron MGP_C57BL6NJ_T0036789.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17166898 17207791 - MGP_C57BL6NJ_P0036789 Stard3nl protein_coding protein_coding MGP_C57BL6NJ_T0036790.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17167220 17179595 - Stard3nl protein_coding retained_intron MGP_C57BL6NJ_T0036791.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17174168 17207778 - MGP_C57BL6NJ_P0036791 Stard3nl protein_coding protein_coding MGP_C57BL6NJ_T0036792.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17178631 17207839 - Stard3nl protein_coding retained_intron MGP_C57BL6NJ_T0036793.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17179550 17185815 - Stard3nl protein_coding retained_intron MGP_C57BL6NJ_T0036794.1 MGP_C57BL6NJ_G0020645.1 mouse_genomes_project 13 17185741 17207803 - MGP_C57BL6NJ_P0036794 Stard3nl protein_coding protein_coding MGP_C57BL6NJ_T0037634.1 MGP_C57BL6NJ_G0020992.1 mouse_genomes_project 13 56850162 56862494 + MGP_C57BL6NJ_P0037634 B230219D22Rik protein_coding protein_coding MGP_C57BL6NJ_T0013249.1 MGP_C57BL6NJ_G0011294.1 mouse_genomes_project 13 77322258 77322597 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037786.1 MGP_C57BL6NJ_G0021045.1 mouse_genomes_project 13 62899542 62908330 - MGP_C57BL6NJ_P0037786 Cts8 protein_coding protein_coding MGP_C57BL6NJ_T0102827.1 MGP_C57BL6NJ_G0040621.1 mouse_genomes_project 13 32843189 32846241 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036622.1 MGP_C57BL6NJ_G0020593.1 mouse_genomes_project 13 1035190 1057284 + MGP_C57BL6NJ_P0036622 Akr1c6 protein_coding protein_coding MGP_C57BL6NJ_T0036623.1 MGP_C57BL6NJ_G0020593.1 mouse_genomes_project 13 1035316 1035931 + Akr1c6 protein_coding processed_transcript MGP_C57BL6NJ_T0036624.1 MGP_C57BL6NJ_G0020593.1 mouse_genomes_project 13 1037030 1049165 + MGP_C57BL6NJ_P0036624 Akr1c6 protein_coding protein_coding MGP_C57BL6NJ_T0038530.1 MGP_C57BL6NJ_G0021305.1 mouse_genomes_project 13 112949902 112950682 - MGP_C57BL6NJ_P0038530 protein_coding protein_coding MGP_C57BL6NJ_T0038495.1 MGP_C57BL6NJ_G0021293.1 mouse_genomes_project 13 109594726 109817367 + MGP_C57BL6NJ_P0038495 Adamts6 protein_coding protein_coding MGP_C57BL6NJ_T0101168.1 MGP_C57BL6NJ_G0039214.1 mouse_genomes_project 13 20961681 20961812 - Gm23774 snoRNA snoRNA MGP_C57BL6NJ_T0037037.1 MGP_C57BL6NJ_G0020784.1 mouse_genomes_project 13 25930641 25942898 - MGP_C57BL6NJ_P0037037 Prl8a6 protein_coding protein_coding MGP_C57BL6NJ_T0037038.1 MGP_C57BL6NJ_G0020784.1 mouse_genomes_project 13 25930641 25942858 - MGP_C57BL6NJ_P0037038 Prl8a6 protein_coding protein_coding MGP_C57BL6NJ_T0037039.1 MGP_C57BL6NJ_G0020784.1 mouse_genomes_project 13 25930828 25942807 - MGP_C57BL6NJ_P0037039 Prl8a6 protein_coding protein_coding MGP_C57BL6NJ_T0038440.1 MGP_C57BL6NJ_G0021281.1 mouse_genomes_project 13 105828193 105858901 - MGP_C57BL6NJ_P0038440 Slc30a5 protein_coding protein_coding MGP_C57BL6NJ_T0013258.1 MGP_C57BL6NJ_G0011303.1 mouse_genomes_project 13 89951518 89953419 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037883.1 MGP_C57BL6NJ_G0021084.1 mouse_genomes_project 13 69490572 69514802 - MGP_C57BL6NJ_P0037883 Zfp712 protein_coding protein_coding MGP_C57BL6NJ_T0037440.1 MGP_C57BL6NJ_G0020940.1 mouse_genomes_project 13 53379864 53407501 - MGP_C57BL6NJ_P0037440 Diras2 protein_coding protein_coding MGP_C57BL6NJ_T0038394.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104982960 104997399 + MGP_C57BL6NJ_P0038394 Smn1 protein_coding protein_coding MGP_C57BL6NJ_T0038395.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104982966 104985251 + Smn1 protein_coding retained_intron MGP_C57BL6NJ_T0038396.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104982966 104985920 + MGP_C57BL6NJ_P0038396 Smn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038397.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104983002 104997189 + MGP_C57BL6NJ_P0038397 Smn1 protein_coding protein_coding MGP_C57BL6NJ_T0038398.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104983032 104990885 + MGP_C57BL6NJ_P0038398 Smn1 protein_coding protein_coding MGP_C57BL6NJ_T0038399.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104984233 104985044 + Smn1 protein_coding retained_intron MGP_C57BL6NJ_T0038400.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104985982 104986738 + Smn1 protein_coding retained_intron MGP_C57BL6NJ_T0038401.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104990713 104997399 + Smn1 protein_coding retained_intron MGP_C57BL6NJ_T0038402.1 MGP_C57BL6NJ_G0021267.1 mouse_genomes_project 13 104995103 104997159 + Smn1 protein_coding retained_intron MGP_C57BL6NJ_T0036801.1 MGP_C57BL6NJ_G0020650.1 mouse_genomes_project 13 17583747 17660420 - MGP_C57BL6NJ_P0036801 Gpr141 protein_coding protein_coding MGP_C57BL6NJ_T0037946.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72197914 72289794 + MGP_C57BL6NJ_P0037946 Nsun2 protein_coding protein_coding MGP_C57BL6NJ_T0037947.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72197936 72280267 + Nsun2 protein_coding processed_transcript MGP_C57BL6NJ_T0037950.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72286374 72310586 + MGP_C57BL6NJ_P0037950 Nsun2 protein_coding protein_coding MGP_C57BL6NJ_T0037951.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72286418 72310878 + MGP_C57BL6NJ_P0037951 Nsun2 protein_coding protein_coding MGP_C57BL6NJ_T0037952.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72286928 72293919 + Nsun2 protein_coding processed_transcript MGP_C57BL6NJ_T0037953.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72295636 72303966 + Nsun2 protein_coding retained_intron MGP_C57BL6NJ_T0037954.1 MGP_C57BL6NJ_G0021122.1 mouse_genomes_project 13 72305076 72306005 + Nsun2 protein_coding retained_intron MGP_C57BL6NJ_T0038471.1 MGP_C57BL6NJ_G0021285.1 mouse_genomes_project 13 109003301 109028754 - MGP_C57BL6NJ_P0038471 Srek1 protein_coding protein_coding MGP_C57BL6NJ_T0036688.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708926 6794785 - MGP_C57BL6NJ_P0036688 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036689.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708926 6794720 - MGP_C57BL6NJ_P0036689 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036690.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708926 6795610 - MGP_C57BL6NJ_P0036690 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036691.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708928 6795456 - MGP_C57BL6NJ_P0036691 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036692.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708931 6715364 - Zmynd11 protein_coding retained_intron MGP_C57BL6NJ_T0036693.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6708931 6794767 - MGP_C57BL6NJ_P0036693 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036694.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6709185 6795252 - MGP_C57BL6NJ_P0036694 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036695.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6710952 6747242 - MGP_C57BL6NJ_P0036695 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036696.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6713229 6714601 - Zmynd11 protein_coding retained_intron MGP_C57BL6NJ_T0036697.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6717565 6720230 - Zmynd11 protein_coding retained_intron MGP_C57BL6NJ_T0036698.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6718377 6795566 - MGP_C57BL6NJ_P0036698 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036699.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6719223 6794741 - MGP_C57BL6NJ_P0036699 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036700.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6721734 6795233 - MGP_C57BL6NJ_P0036700 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036701.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6721734 6795617 - MGP_C57BL6NJ_P0036701 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036702.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6721753 6765094 - Zmynd11 protein_coding processed_transcript MGP_C57BL6NJ_T0036703.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6721790 6764736 - Zmynd11 protein_coding processed_transcript MGP_C57BL6NJ_T0036704.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6721793 6794715 - MGP_C57BL6NJ_P0036704 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036705.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6722748 6765202 - MGP_C57BL6NJ_P0036705 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0036706.1 MGP_C57BL6NJ_G0020611.1 mouse_genomes_project 13 6733781 6794751 - MGP_C57BL6NJ_P0036706 Zmynd11 protein_coding protein_coding MGP_C57BL6NJ_T0038297.1 MGP_C57BL6NJ_G0021232.1 mouse_genomes_project 13 100127036 100132923 + MGP_C57BL6NJ_P0038297 F2rl2 protein_coding protein_coding MGP_C57BL6NJ_T0010112.1 MGP_C57BL6NJ_G0008197.1 mouse_genomes_project 13 5841078 5841181 - Gm22750 miRNA miRNA MGP_C57BL6NJ_T0037714.1 MGP_C57BL6NJ_G0021019.1 mouse_genomes_project 13 59976262 59989087 - MGP_C57BL6NJ_P0037714 Slc28a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037715.1 MGP_C57BL6NJ_G0021019.1 mouse_genomes_project 13 59984124 60042580 - MGP_C57BL6NJ_P0037715 Slc28a3 protein_coding protein_coding MGP_C57BL6NJ_T0037716.1 MGP_C57BL6NJ_G0021019.1 mouse_genomes_project 13 60013488 60042580 - MGP_C57BL6NJ_P0037716 Slc28a3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037717.1 MGP_C57BL6NJ_G0021019.1 mouse_genomes_project 13 60017950 60042572 - Slc28a3 protein_coding retained_intron MGP_C57BL6NJ_T0038098.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053638 87219784 + MGP_C57BL6NJ_P0038098 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038099.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053810 87220127 + MGP_C57BL6NJ_P0038099 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038100.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053844 87147544 + MGP_C57BL6NJ_P0038100 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038101.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053844 87223519 + MGP_C57BL6NJ_P0038101 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038102.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053844 87223519 + MGP_C57BL6NJ_P0038102 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038103.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87053844 87147478 + MGP_C57BL6NJ_P0038103 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038104.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87075414 87180894 + MGP_C57BL6NJ_P0038104 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038105.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076214 87188636 + MGP_C57BL6NJ_P0038105 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038106.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076720 87081273 + Mef2c protein_coding retained_intron MGP_C57BL6NJ_T0038107.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076777 87220899 + MGP_C57BL6NJ_P0038107 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038108.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076778 87181036 + MGP_C57BL6NJ_P0038108 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038109.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076784 87220134 + MGP_C57BL6NJ_P0038109 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038110.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076814 87209320 + MGP_C57BL6NJ_P0038110 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038111.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87076843 87189388 + Mef2c protein_coding retained_intron MGP_C57BL6NJ_T0038112.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87082061 87180885 + MGP_C57BL6NJ_P0038112 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038113.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87125898 87190954 + MGP_C57BL6NJ_P0038113 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038114.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87125931 87181073 + MGP_C57BL6NJ_P0038114 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038115.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87127157 87223521 + MGP_C57BL6NJ_P0038115 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038116.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87127168 87131960 + Mef2c protein_coding retained_intron MGP_C57BL6NJ_T0038117.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87127172 87220914 + MGP_C57BL6NJ_P0038117 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038118.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87127175 87188737 + MGP_C57BL6NJ_P0038118 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038119.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87128695 87209273 + MGP_C57BL6NJ_P0038119 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038120.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87128760 87188662 + MGP_C57BL6NJ_P0038120 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038121.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87129227 87219072 + MGP_C57BL6NJ_P0038121 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038122.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87129227 87219072 + MGP_C57BL6NJ_P0038122 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038123.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87129227 87223521 + MGP_C57BL6NJ_P0038123 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038124.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87181103 87219177 + MGP_C57BL6NJ_P0038124 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0038125.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87188561 87211951 + MGP_C57BL6NJ_P0038125 Mef2c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038126.1 MGP_C57BL6NJ_G0021180.1 mouse_genomes_project 13 87209297 87219180 + MGP_C57BL6NJ_P0038126 Mef2c protein_coding protein_coding MGP_C57BL6NJ_T0013204.1 MGP_C57BL6NJ_G0011249.1 mouse_genomes_project 13 22437318 22437917 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102798.1 MGP_C57BL6NJ_G0040592.1 mouse_genomes_project 13 20506425 20510399 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0038420.1 MGP_C57BL6NJ_G0021273.1 mouse_genomes_project 13 105595392 105633656 - MGP_C57BL6NJ_P0038420 Rad17 protein_coding protein_coding MGP_C57BL6NJ_T0038421.1 MGP_C57BL6NJ_G0021273.1 mouse_genomes_project 13 105595392 105633656 - MGP_C57BL6NJ_P0038421 Rad17 protein_coding protein_coding MGP_C57BL6NJ_T0037362.1 MGP_C57BL6NJ_G0020913.1 mouse_genomes_project 13 49604852 49613612 + MGP_C57BL6NJ_P0037362 Ninj1 protein_coding protein_coding MGP_C57BL6NJ_T0037363.1 MGP_C57BL6NJ_G0020913.1 mouse_genomes_project 13 49604892 49613612 + MGP_C57BL6NJ_P0037363 Ninj1 protein_coding protein_coding MGP_C57BL6NJ_T0037364.1 MGP_C57BL6NJ_G0020913.1 mouse_genomes_project 13 49604903 49613127 + MGP_C57BL6NJ_P0037364 Ninj1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037365.1 MGP_C57BL6NJ_G0020913.1 mouse_genomes_project 13 49605134 49612292 + Ninj1 protein_coding processed_transcript MGP_C57BL6NJ_T0037366.1 MGP_C57BL6NJ_G0020913.1 mouse_genomes_project 13 49607663 49613612 + Ninj1 protein_coding processed_transcript MGP_C57BL6NJ_T0038496.1 MGP_C57BL6NJ_G0021294.1 mouse_genomes_project 13 109960968 110150781 - MGP_C57BL6NJ_P0038496 Cwc27 protein_coding protein_coding MGP_C57BL6NJ_T0038497.1 MGP_C57BL6NJ_G0021294.1 mouse_genomes_project 13 110082022 110123817 - Cwc27 protein_coding processed_transcript MGP_C57BL6NJ_T0038498.1 MGP_C57BL6NJ_G0021294.1 mouse_genomes_project 13 110121681 110123852 - Cwc27 protein_coding processed_transcript MGP_C57BL6NJ_T0038500.1 MGP_C57BL6NJ_G0021294.1 mouse_genomes_project 13 110138889 110150970 - MGP_C57BL6NJ_P0038500 Cwc27 protein_coding protein_coding MGP_C57BL6NJ_T0006760.1 MGP_C57BL6NJ_G0005602.1 mouse_genomes_project 13 72701847 72725713 - 1700084F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006761.1 MGP_C57BL6NJ_G0005602.1 mouse_genomes_project 13 72702282 72724728 - 1700084F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006762.1 MGP_C57BL6NJ_G0005602.1 mouse_genomes_project 13 72710647 72724212 - 1700084F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006763.1 MGP_C57BL6NJ_G0005602.1 mouse_genomes_project 13 72717343 72725688 - 1700084F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0006764.1 MGP_C57BL6NJ_G0005602.1 mouse_genomes_project 13 72720498 72725684 - 1700084F23Rik lincRNA lincRNA MGP_C57BL6NJ_T0013235.1 MGP_C57BL6NJ_G0011280.1 mouse_genomes_project 13 55921376 55921632 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013223.1 MGP_C57BL6NJ_G0011268.1 mouse_genomes_project 13 29597179 29597439 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036853.1 MGP_C57BL6NJ_G0020679.1 mouse_genomes_project 13 19677881 19678262 + MGP_C57BL6NJ_P0036853 Hist1h2bm protein_coding protein_coding MGP_C57BL6NJ_T0037021.1 MGP_C57BL6NJ_G0020773.1 mouse_genomes_project 13 25173816 25175756 - MGP_C57BL6NJ_P0037021 Hdgfl1 protein_coding protein_coding MGP_C57BL6NJ_T0037081.1 MGP_C57BL6NJ_G0020804.1 mouse_genomes_project 13 29821588 29822775 - MGP_C57BL6NJ_P0037081 Hus1b protein_coding protein_coding MGP_C57BL6NJ_T0101165.1 MGP_C57BL6NJ_G0039211.1 mouse_genomes_project 13 10746424 10746651 + Gm25483 snoRNA snoRNA MGP_C57BL6NJ_T0099865.1 MGP_C57BL6NJ_G0037911.1 mouse_genomes_project 13 13741930 13742037 - Gm22628 snRNA snRNA MGP_C57BL6NJ_T0037859.1 MGP_C57BL6NJ_G0021074.1 mouse_genomes_project 13 67289213 67290161 + MGP_C57BL6NJ_P0037859 Olfr465-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0036635.1 MGP_C57BL6NJ_G0020600.1 mouse_genomes_project 13 3309328 3345547 + MGP_C57BL6NJ_P0036635 Pitrm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036636.1 MGP_C57BL6NJ_G0020600.1 mouse_genomes_project 13 3309355 3345943 + MGP_C57BL6NJ_P0036636 Pitrm1 protein_coding protein_coding MGP_C57BL6NJ_T0102816.1 MGP_C57BL6NJ_G0040610.1 mouse_genomes_project 13 21221067 21221545 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003624.1 MGP_C57BL6NJ_G0003304.1 mouse_genomes_project 13 73316096 73321220 + antisense antisense MGP_C57BL6NJ_T0003625.1 MGP_C57BL6NJ_G0003304.1 mouse_genomes_project 13 73316135 73321215 + antisense antisense MGP_C57BL6NJ_T0038047.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79512383 80185207 + MGP_C57BL6NJ_P0038047 Mctp1 protein_coding protein_coding MGP_C57BL6NJ_T0038048.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79712386 79902413 + MGP_C57BL6NJ_P0038048 Mctp1 protein_coding protein_coding MGP_C57BL6NJ_T0038049.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79712440 79870892 + MGP_C57BL6NJ_P0038049 Mctp1 protein_coding protein_coding MGP_C57BL6NJ_T0038050.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79712473 80183348 + MGP_C57BL6NJ_P0038050 Mctp1 protein_coding protein_coding MGP_C57BL6NJ_T0038051.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79861697 79974128 + Mctp1 protein_coding retained_intron MGP_C57BL6NJ_T0038052.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79970494 79973364 + Mctp1 protein_coding retained_intron MGP_C57BL6NJ_T0038053.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79970733 80184142 + Mctp1 protein_coding retained_intron MGP_C57BL6NJ_T0038054.1 MGP_C57BL6NJ_G0021168.1 mouse_genomes_project 13 79970770 79973571 + Mctp1 protein_coding retained_intron MGP_C57BL6NJ_T0037339.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48815240 48846869 - MGP_C57BL6NJ_P0037339 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037340.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48815252 48846827 - MGP_C57BL6NJ_P0037340 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037341.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48816795 48839691 - MGP_C57BL6NJ_P0037341 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037342.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48817047 48839691 - MGP_C57BL6NJ_P0037342 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037343.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48818845 48846843 - MGP_C57BL6NJ_P0037343 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037344.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48818923 48846859 - MGP_C57BL6NJ_P0037344 Zfp169 protein_coding protein_coding MGP_C57BL6NJ_T0037345.1 MGP_C57BL6NJ_G0020906.1 mouse_genomes_project 13 48823514 48846884 - Zfp169 protein_coding retained_intron MGP_C57BL6NJ_T0036896.1 MGP_C57BL6NJ_G0020712.1 mouse_genomes_project 13 20645542 20885601 - MGP_C57BL6NJ_P0036896 Vmn1r209 protein_coding protein_coding MGP_C57BL6NJ_T0036911.1 MGP_C57BL6NJ_G0020727.1 mouse_genomes_project 13 21391570 21392530 + MGP_C57BL6NJ_P0036911 Vmn1r193 protein_coding protein_coding MGP_C57BL6NJ_T0037107.1 MGP_C57BL6NJ_G0020819.1 mouse_genomes_project 13 32114798 32128086 + MGP_C57BL6NJ_P0037107 Serpinb1b protein_coding protein_coding MGP_C57BL6NJ_T0010170.1 MGP_C57BL6NJ_G0008255.1 mouse_genomes_project 13 119064455 119064564 + Mir449c miRNA miRNA MGP_C57BL6NJ_T0010174.1 MGP_C57BL6NJ_G0008259.1 mouse_genomes_project 13 125830940 125831059 - Gm44488 miRNA miRNA MGP_C57BL6NJ_T0102794.1 MGP_C57BL6NJ_G0040588.1 mouse_genomes_project 13 20325965 20326832 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013200.1 MGP_C57BL6NJ_G0011245.1 mouse_genomes_project 13 21220225 21220694 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013184.1 MGP_C57BL6NJ_G0011229.1 mouse_genomes_project 13 9560735 9561240 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013207.1 MGP_C57BL6NJ_G0011252.1 mouse_genomes_project 13 22667106 22667441 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010131.1 MGP_C57BL6NJ_G0008216.1 mouse_genomes_project 13 48876450 48876547 + Gm24111 miRNA miRNA MGP_C57BL6NJ_T0036928.1 MGP_C57BL6NJ_G0020737.1 mouse_genomes_project 13 21784869 21785429 + MGP_C57BL6NJ_P0036928 Hist1h3d protein_coding protein_coding MGP_C57BL6NJ_T0036946.1 MGP_C57BL6NJ_G0020751.1 mouse_genomes_project 13 21988530 21989172 + MGP_C57BL6NJ_P0036946 Hist1h1a protein_coding protein_coding MGP_C57BL6NJ_T0102829.1 MGP_C57BL6NJ_G0040623.1 mouse_genomes_project 13 32896072 32896889 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037939.1 MGP_C57BL6NJ_G0021116.1 mouse_genomes_project 13 70476787 70477385 + MGP_C57BL6NJ_P0037939 BC048507 protein_coding protein_coding MGP_C57BL6NJ_T0037319.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47215544 47234203 - MGP_C57BL6NJ_P0037319 Tpmt protein_coding protein_coding MGP_C57BL6NJ_T0037320.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47215553 47234117 - MGP_C57BL6NJ_P0037320 Tpmt protein_coding protein_coding MGP_C57BL6NJ_T0037321.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47215742 47235657 - MGP_C57BL6NJ_P0037321 Tpmt protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037322.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47219271 47234336 - MGP_C57BL6NJ_P0037322 Tpmt protein_coding protein_coding MGP_C57BL6NJ_T0037323.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47219290 47235730 - MGP_C57BL6NJ_P0037323 Tpmt protein_coding protein_coding MGP_C57BL6NJ_T0037324.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47230690 47234137 - Tpmt protein_coding retained_intron MGP_C57BL6NJ_T0037325.1 MGP_C57BL6NJ_G0020901.1 mouse_genomes_project 13 47231106 47234131 - MGP_C57BL6NJ_P0037325 Tpmt protein_coding protein_coding MGP_C57BL6NJ_T0013274.1 MGP_C57BL6NJ_G0011319.1 mouse_genomes_project 13 118897082 118898039 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037892.1 MGP_C57BL6NJ_G0021088.1 mouse_genomes_project 13 69583863 69600807 + MGP_C57BL6NJ_P0037892 Zfp759 protein_coding protein_coding MGP_C57BL6NJ_T0003638.1 MGP_C57BL6NJ_G0003309.1 mouse_genomes_project 13 95849129 95888813 - 4833422C13Rik antisense antisense MGP_C57BL6NJ_T0003639.1 MGP_C57BL6NJ_G0003309.1 mouse_genomes_project 13 95855368 95888717 - 4833422C13Rik antisense antisense MGP_C57BL6NJ_T0003640.1 MGP_C57BL6NJ_G0003309.1 mouse_genomes_project 13 95860750 95888769 - 4833422C13Rik antisense antisense MGP_C57BL6NJ_T0101194.1 MGP_C57BL6NJ_G0039240.1 mouse_genomes_project 13 85514232 85514363 + Gm24295 snoRNA snoRNA MGP_C57BL6NJ_T0037621.1 MGP_C57BL6NJ_G0020986.1 mouse_genomes_project 13 56676978 56684832 - MGP_C57BL6NJ_P0037621 Ddx41 protein_coding protein_coding MGP_C57BL6NJ_T0037791.1 MGP_C57BL6NJ_G0021050.1 mouse_genomes_project 13 64514356 64597773 - MGP_C57BL6NJ_P0037791 6720489N17Rik protein_coding protein_coding MGP_C57BL6NJ_T0037792.1 MGP_C57BL6NJ_G0021050.1 mouse_genomes_project 13 64516533 64517606 - MGP_C57BL6NJ_P0037792 6720489N17Rik protein_coding protein_coding MGP_C57BL6NJ_T0102818.1 MGP_C57BL6NJ_G0040612.1 mouse_genomes_project 13 21944184 21945743 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037784.1 MGP_C57BL6NJ_G0021043.1 mouse_genomes_project 13 62791672 62797731 - MGP_C57BL6NJ_P0037784 Ctsr protein_coding protein_coding MGP_C57BL6NJ_T0102814.1 MGP_C57BL6NJ_G0040608.1 mouse_genomes_project 13 21115415 21115705 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013216.1 MGP_C57BL6NJ_G0011261.1 mouse_genomes_project 13 25808097 25809051 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038362.1 MGP_C57BL6NJ_G0021253.1 mouse_genomes_project 13 103221449 103224103 - MGP_C57BL6NJ_P0038362 Gm10320 protein_coding protein_coding MGP_C57BL6NJ_T0037560.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56127982 56210538 - MGP_C57BL6NJ_P0037560 Uimc1 protein_coding protein_coding MGP_C57BL6NJ_T0037561.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56127982 56210543 - MGP_C57BL6NJ_P0037561 Uimc1 protein_coding protein_coding MGP_C57BL6NJ_T0037562.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56128297 56210497 - MGP_C57BL6NJ_P0037562 Uimc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037563.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56128397 56210543 - MGP_C57BL6NJ_P0037563 Uimc1 protein_coding protein_coding MGP_C57BL6NJ_T0037564.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56183670 56210542 - Uimc1 protein_coding retained_intron MGP_C57BL6NJ_T0037565.1 MGP_C57BL6NJ_G0020968.1 mouse_genomes_project 13 56193936 56202061 - Uimc1 protein_coding retained_intron MGP_C57BL6NJ_T0003618.1 MGP_C57BL6NJ_G0003300.1 mouse_genomes_project 13 69884120 69900607 + antisense antisense MGP_C57BL6NJ_T0037382.1 MGP_C57BL6NJ_G0020921.1 mouse_genomes_project 13 49980545 50008334 + MGP_C57BL6NJ_P0037382 Aspn protein_coding protein_coding MGP_C57BL6NJ_T0037383.1 MGP_C57BL6NJ_G0020921.1 mouse_genomes_project 13 49980545 50008334 + MGP_C57BL6NJ_P0037383 Aspn protein_coding protein_coding MGP_C57BL6NJ_T0101161.1 MGP_C57BL6NJ_G0039207.1 mouse_genomes_project 13 5862517 5862652 + Gm25274 snoRNA snoRNA MGP_C57BL6NJ_T0037762.1 MGP_C57BL6NJ_G0021028.1 mouse_genomes_project 13 61253408 61257488 - MGP_C57BL6NJ_P0037762 1700014D04Rik protein_coding protein_coding MGP_C57BL6NJ_T0037763.1 MGP_C57BL6NJ_G0021028.1 mouse_genomes_project 13 61254522 61255317 - MGP_C57BL6NJ_P0037763 1700014D04Rik protein_coding protein_coding MGP_C57BL6NJ_T0037764.1 MGP_C57BL6NJ_G0021028.1 mouse_genomes_project 13 61256273 61259316 - MGP_C57BL6NJ_P0037764 1700014D04Rik protein_coding protein_coding MGP_C57BL6NJ_T0037653.1 MGP_C57BL6NJ_G0021001.1 mouse_genomes_project 13 57601238 57605805 + MGP_C57BL6NJ_P0037653 Gm10782 protein_coding protein_coding MGP_C57BL6NJ_T0037189.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37256012 37383422 + MGP_C57BL6NJ_P0037189 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037190.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37311309 37383399 + MGP_C57BL6NJ_P0037190 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037191.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37311373 37427621 + MGP_C57BL6NJ_P0037191 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037192.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37311649 37444019 + MGP_C57BL6NJ_P0037192 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037193.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37312266 37424767 + MGP_C57BL6NJ_P0037193 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037194.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37312266 37439043 + MGP_C57BL6NJ_P0037194 Rreb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037195.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37312727 37424769 + MGP_C57BL6NJ_P0037195 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037196.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37347564 37383487 + MGP_C57BL6NJ_P0037196 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037197.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37378006 37444021 + MGP_C57BL6NJ_P0037197 Rreb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037198.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37378443 37444013 + MGP_C57BL6NJ_P0037198 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0037199.1 MGP_C57BL6NJ_G0020849.1 mouse_genomes_project 13 37439034 37441225 + MGP_C57BL6NJ_P0037199 Rreb1 protein_coding protein_coding MGP_C57BL6NJ_T0006676.1 MGP_C57BL6NJ_G0005544.1 mouse_genomes_project 13 21427461 21466388 - 4930557F10Rik lincRNA lincRNA MGP_C57BL6NJ_T0003585.1 MGP_C57BL6NJ_G0003277.1 mouse_genomes_project 13 20014767 20015670 + Gm11290 antisense antisense MGP_C57BL6NJ_T0003586.1 MGP_C57BL6NJ_G0003277.1 mouse_genomes_project 13 20014767 20015648 + Gm11290 antisense antisense MGP_C57BL6NJ_T0013230.1 MGP_C57BL6NJ_G0011275.1 mouse_genomes_project 13 34234190 34235176 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036594.1 MGP_C57BL6NJ_G0020579.1 mouse_genomes_project 13 78421 108644 + MGP_C57BL6NJ_P0036594 Gdi2 protein_coding protein_coding MGP_C57BL6NJ_T0037387.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50136971 50186422 + MGP_C57BL6NJ_P0037387 Iars protein_coding protein_coding MGP_C57BL6NJ_T0037388.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50137001 50186422 + MGP_C57BL6NJ_P0037388 Iars protein_coding protein_coding MGP_C57BL6NJ_T0037389.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50137062 50143188 + MGP_C57BL6NJ_P0037389 Iars protein_coding protein_coding MGP_C57BL6NJ_T0037390.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50142267 50185896 + MGP_C57BL6NJ_P0037390 Iars protein_coding protein_coding MGP_C57BL6NJ_T0037391.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50156612 50162613 + MGP_C57BL6NJ_P0037391 Iars protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037392.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50157363 50166614 + Iars protein_coding retained_intron MGP_C57BL6NJ_T0037393.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50159022 50165988 + Iars protein_coding retained_intron MGP_C57BL6NJ_T0037394.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50168687 50174000 + Iars protein_coding retained_intron MGP_C57BL6NJ_T0037395.1 MGP_C57BL6NJ_G0020925.1 mouse_genomes_project 13 50172950 50173928 + Iars protein_coding retained_intron MGP_C57BL6NJ_T0003588.1 MGP_C57BL6NJ_G0003279.1 mouse_genomes_project 13 20724078 20753788 + antisense antisense MGP_C57BL6NJ_T0037903.1 MGP_C57BL6NJ_G0021096.1 mouse_genomes_project 13 69887033 69909984 - MGP_C57BL6NJ_P0037903 Zfp456 protein_coding protein_coding MGP_C57BL6NJ_T0099890.1 MGP_C57BL6NJ_G0037936.1 mouse_genomes_project 13 98253014 98253114 + Gm24737 snRNA snRNA MGP_C57BL6NJ_T0099867.1 MGP_C57BL6NJ_G0037913.1 mouse_genomes_project 13 15596595 15596702 - Gm24018 snRNA snRNA MGP_C57BL6NJ_T0037270.1 MGP_C57BL6NJ_G0020881.1 mouse_genomes_project 13 43253566 43276820 + MGP_C57BL6NJ_P0037270 Sirt5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037309.1 MGP_C57BL6NJ_G0020897.1 mouse_genomes_project 13 46829720 46838757 + MGP_C57BL6NJ_P0037309 protein_coding protein_coding MGP_C57BL6NJ_T0037310.1 MGP_C57BL6NJ_G0020897.1 mouse_genomes_project 13 46832415 46835039 + protein_coding retained_intron MGP_C57BL6NJ_T0036879.1 MGP_C57BL6NJ_G0020695.1 mouse_genomes_project 13 20045246 20045691 + MGP_C57BL6NJ_P0036879 Hist1h2bj protein_coding protein_coding MGP_C57BL6NJ_T0037631.1 MGP_C57BL6NJ_G0020991.1 mouse_genomes_project 13 56789262 56837250 + MGP_C57BL6NJ_P0037631 Ddx46 protein_coding protein_coding MGP_C57BL6NJ_T0037632.1 MGP_C57BL6NJ_G0020991.1 mouse_genomes_project 13 56789262 56837250 + MGP_C57BL6NJ_P0037632 Ddx46 protein_coding protein_coding MGP_C57BL6NJ_T0037633.1 MGP_C57BL6NJ_G0020991.1 mouse_genomes_project 13 56789414 56837258 + MGP_C57BL6NJ_P0037633 Ddx46 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038631.1 MGP_C57BL6NJ_G0021341.1 mouse_genomes_project 13 120417017 120521327 - MGP_C57BL6NJ_P0038631 Ndufs4 protein_coding protein_coding MGP_C57BL6NJ_T0010128.1 MGP_C57BL6NJ_G0008213.1 mouse_genomes_project 13 40583751 40583823 + Mir5124a miRNA miRNA MGP_C57BL6NJ_T0037184.1 MGP_C57BL6NJ_G0020846.1 mouse_genomes_project 13 36116465 36126644 - MGP_C57BL6NJ_P0037184 Nrn1 protein_coding protein_coding MGP_C57BL6NJ_T0037185.1 MGP_C57BL6NJ_G0020846.1 mouse_genomes_project 13 36117298 36121377 - MGP_C57BL6NJ_P0037185 Nrn1 protein_coding protein_coding MGP_C57BL6NJ_T0036707.1 MGP_C57BL6NJ_G0020612.1 mouse_genomes_project 13 6891856 7417134 - MGP_C57BL6NJ_P0036707 Chrm3 protein_coding protein_coding MGP_C57BL6NJ_T0036708.1 MGP_C57BL6NJ_G0020612.1 mouse_genomes_project 13 6893599 6895369 - MGP_C57BL6NJ_P0036708 Chrm3 protein_coding protein_coding MGP_C57BL6NJ_T0036709.1 MGP_C57BL6NJ_G0020612.1 mouse_genomes_project 13 7265766 7416853 - Chrm3 protein_coding processed_transcript MGP_C57BL6NJ_T0099896.1 MGP_C57BL6NJ_G0037942.1 mouse_genomes_project 13 118261146 118261299 + Gm22768 snRNA snRNA MGP_C57BL6NJ_T0038364.1 MGP_C57BL6NJ_G0021255.1 mouse_genomes_project 13 103431788 103440388 - MGP_C57BL6NJ_P0038364 Tmem171 protein_coding protein_coding MGP_C57BL6NJ_T0038365.1 MGP_C57BL6NJ_G0021255.1 mouse_genomes_project 13 103437867 103440322 - MGP_C57BL6NJ_P0038365 Tmem171 protein_coding protein_coding MGP_C57BL6NJ_T0006780.1 MGP_C57BL6NJ_G0005612.1 mouse_genomes_project 13 87610835 87655823 - Gm17750 lincRNA lincRNA MGP_C57BL6NJ_T0037048.1 MGP_C57BL6NJ_G0020790.1 mouse_genomes_project 13 26179420 26193624 - MGP_C57BL6NJ_P0037048 Prl7a2 protein_coding protein_coding MGP_C57BL6NJ_T0002726.1 MGP_C57BL6NJ_G0002604.1 mouse_genomes_project 13 16985604 16986073 + MGP_C57BL6NJ_P0002726 Tcrg-V7 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0036899.1 MGP_C57BL6NJ_G0020715.1 mouse_genomes_project 13 20930631 20931725 - MGP_C57BL6NJ_P0036899 Vmn1r211 protein_coding protein_coding MGP_C57BL6NJ_T0038656.1 MGP_C57BL6NJ_G0021353.1 mouse_genomes_project 13 124841635 124843130 + MGP_C57BL6NJ_P0038656 B430218F22Rik protein_coding protein_coding MGP_C57BL6NJ_T0036727.1 MGP_C57BL6NJ_G0020622.1 mouse_genomes_project 13 10923238 11017520 + MGP_C57BL6NJ_P0036727 Nid1 protein_coding protein_coding MGP_C57BL6NJ_T0037381.1 MGP_C57BL6NJ_G0020920.1 mouse_genomes_project 13 49941601 49968892 + MGP_C57BL6NJ_P0037381 Ecm2 protein_coding protein_coding MGP_C57BL6NJ_T0038404.1 MGP_C57BL6NJ_G0021269.1 mouse_genomes_project 13 105341664 105409597 - MGP_C57BL6NJ_P0038404 protein_coding protein_coding MGP_C57BL6NJ_T0099876.1 MGP_C57BL6NJ_G0037922.1 mouse_genomes_project 13 34982871 34983013 + Gm22126 snRNA snRNA MGP_C57BL6NJ_T0099893.1 MGP_C57BL6NJ_G0037939.1 mouse_genomes_project 13 105581774 105581878 + Gm24261 snRNA snRNA MGP_C57BL6NJ_T0013270.1 MGP_C57BL6NJ_G0011315.1 mouse_genomes_project 13 112010960 112011206 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038009.1 MGP_C57BL6NJ_G0021150.1 mouse_genomes_project 13 77139396 77188778 - MGP_C57BL6NJ_P0038009 Exoc3 protein_coding protein_coding MGP_C57BL6NJ_T0037853.1 MGP_C57BL6NJ_G0021071.1 mouse_genomes_project 13 67170147 67175084 + MGP_C57BL6NJ_P0037853 Spata31d1c protein_coding protein_coding MGP_C57BL6NJ_T0099877.1 MGP_C57BL6NJ_G0037923.1 mouse_genomes_project 13 39492317 39492482 - Gm23972 snRNA snRNA MGP_C57BL6NJ_T0001031.1 MGP_C57BL6NJ_G0000940.1 mouse_genomes_project 13 107230499 107232418 - TEC TEC MGP_C57BL6NJ_T0038575.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117296482 117376830 - MGP_C57BL6NJ_P0038575 Gpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0038576.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117296734 117376747 - MGP_C57BL6NJ_P0038576 Gpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0038577.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117296960 117374382 - MGP_C57BL6NJ_P0038577 Gpbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038578.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117314624 117329791 - Gpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0038579.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117317225 117329750 - Gpbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0038580.1 MGP_C57BL6NJ_G0021317.1 mouse_genomes_project 13 117317295 117329791 - Gpbp1 protein_coding retained_intron MGP_C57BL6NJ_T0038028.1 MGP_C57BL6NJ_G0021155.1 mouse_genomes_project 13 77345501 77349929 - MGP_C57BL6NJ_P0038028 Lrrc14b protein_coding protein_coding MGP_C57BL6NJ_T0037803.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65333722 65432578 - MGP_C57BL6NJ_P0037803 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037804.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65333727 65339446 - Fancc protein_coding processed_transcript MGP_C57BL6NJ_T0037805.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65333728 65461877 - MGP_C57BL6NJ_P0037805 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037806.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65334469 65347260 - Fancc protein_coding processed_transcript MGP_C57BL6NJ_T0037807.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65338550 65461874 - Fancc protein_coding retained_intron MGP_C57BL6NJ_T0037808.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65343540 65354106 - Fancc protein_coding processed_transcript MGP_C57BL6NJ_T0037809.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65352780 65376307 - Fancc protein_coding processed_transcript MGP_C57BL6NJ_T0037810.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65352780 65461897 - Fancc protein_coding retained_intron MGP_C57BL6NJ_T0037811.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65362535 65427739 - MGP_C57BL6NJ_P0037811 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037812.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65371556 65461447 - MGP_C57BL6NJ_P0037812 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037813.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65371607 65435848 - MGP_C57BL6NJ_P0037813 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037814.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65371616 65427866 - Fancc protein_coding retained_intron MGP_C57BL6NJ_T0037815.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65371646 65535307 - MGP_C57BL6NJ_P0037815 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0037816.1 MGP_C57BL6NJ_G0021057.1 mouse_genomes_project 13 65432505 65439308 - MGP_C57BL6NJ_P0037816 Fancc protein_coding protein_coding MGP_C57BL6NJ_T0010173.1 MGP_C57BL6NJ_G0008258.1 mouse_genomes_project 13 120724265 120724365 + Gm25950 miRNA miRNA MGP_C57BL6NJ_T0001028.1 MGP_C57BL6NJ_G0000937.1 mouse_genomes_project 13 106509546 106510038 - TEC TEC MGP_C57BL6NJ_T0003600.1 MGP_C57BL6NJ_G0003289.1 mouse_genomes_project 13 41580969 41581982 + 1700061E18Rik antisense antisense MGP_C57BL6NJ_T0036629.1 MGP_C57BL6NJ_G0020596.1 mouse_genomes_project 13 1188550 1207817 - MGP_C57BL6NJ_P0036629 Akr1e1 protein_coding protein_coding MGP_C57BL6NJ_T0036630.1 MGP_C57BL6NJ_G0020596.1 mouse_genomes_project 13 1190283 1207817 - MGP_C57BL6NJ_P0036630 Akr1e1 protein_coding protein_coding MGP_C57BL6NJ_T0036631.1 MGP_C57BL6NJ_G0020596.1 mouse_genomes_project 13 1199070 1207777 - Akr1e1 protein_coding processed_transcript MGP_C57BL6NJ_T0102792.1 MGP_C57BL6NJ_G0040586.1 mouse_genomes_project 13 20178057 20178960 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013186.1 MGP_C57BL6NJ_G0011231.1 mouse_genomes_project 13 17229974 17230423 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003654.1 MGP_C57BL6NJ_G0003317.1 mouse_genomes_project 13 107957254 107958909 + 1700099I09Rik antisense antisense MGP_C57BL6NJ_T0003655.1 MGP_C57BL6NJ_G0003317.1 mouse_genomes_project 13 107957269 107958875 + 1700099I09Rik antisense antisense MGP_C57BL6NJ_T0036902.1 MGP_C57BL6NJ_G0020718.1 mouse_genomes_project 13 21129269 21130373 + MGP_C57BL6NJ_P0036902 Vmn1r214 protein_coding protein_coding MGP_C57BL6NJ_T0036759.1 MGP_C57BL6NJ_G0020632.1 mouse_genomes_project 13 12222146 12224885 - MGP_C57BL6NJ_P0036759 Mrpl32 protein_coding protein_coding MGP_C57BL6NJ_T0037112.1 MGP_C57BL6NJ_G0020822.1 mouse_genomes_project 13 32245600 32333662 + MGP_C57BL6NJ_P0037112 protein_coding protein_coding MGP_C57BL6NJ_T0102791.1 MGP_C57BL6NJ_G0040585.1 mouse_genomes_project 13 20100567 20101025 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037219.1 MGP_C57BL6NJ_G0020862.1 mouse_genomes_project 13 40422847 40442957 - MGP_C57BL6NJ_P0037219 Tfap2a protein_coding protein_coding MGP_C57BL6NJ_T0037220.1 MGP_C57BL6NJ_G0020862.1 mouse_genomes_project 13 40423839 40447210 - MGP_C57BL6NJ_P0037220 Tfap2a protein_coding protein_coding MGP_C57BL6NJ_T0036930.1 MGP_C57BL6NJ_G0020739.1 mouse_genomes_project 13 21792852 21835112 - MGP_C57BL6NJ_P0036930 Hist1h2be protein_coding protein_coding MGP_C57BL6NJ_T0036931.1 MGP_C57BL6NJ_G0020739.1 mouse_genomes_project 13 21792853 21835142 - MGP_C57BL6NJ_P0036931 Hist1h2be protein_coding protein_coding MGP_C57BL6NJ_T0036932.1 MGP_C57BL6NJ_G0020739.1 mouse_genomes_project 13 21832997 21835096 - Hist1h2be protein_coding processed_transcript MGP_C57BL6NJ_T0001010.1 MGP_C57BL6NJ_G0000919.1 mouse_genomes_project 13 41638420 41638883 + TEC TEC MGP_C57BL6NJ_T0037860.1 MGP_C57BL6NJ_G0021075.1 mouse_genomes_project 13 67297178 67298105 + MGP_C57BL6NJ_P0037860 Olfr466 protein_coding protein_coding MGP_C57BL6NJ_T0036942.1 MGP_C57BL6NJ_G0020747.1 mouse_genomes_project 13 21974257 21974730 + MGP_C57BL6NJ_P0036942 Hist1h2ab protein_coding protein_coding MGP_C57BL6NJ_T0099001.1 MGP_C57BL6NJ_G0037065.1 mouse_genomes_project 13 119466285 119466386 + Gm22385 rRNA rRNA MGP_C57BL6NJ_T0101188.1 MGP_C57BL6NJ_G0039234.1 mouse_genomes_project 13 78886510 78886640 + Gm23127 snoRNA snoRNA MGP_C57BL6NJ_T0037182.1 MGP_C57BL6NJ_G0020844.1 mouse_genomes_project 13 35329883 35477540 - MGP_C57BL6NJ_P0037182 Lyrm4 protein_coding protein_coding MGP_C57BL6NJ_T0099894.1 MGP_C57BL6NJ_G0037940.1 mouse_genomes_project 13 108896931 108897038 + Gm24870 snRNA snRNA MGP_C57BL6NJ_T0037295.1 MGP_C57BL6NJ_G0020889.1 mouse_genomes_project 13 45105098 45107267 + MGP_C57BL6NJ_P0037295 protein_coding protein_coding MGP_C57BL6NJ_T0099895.1 MGP_C57BL6NJ_G0037941.1 mouse_genomes_project 13 112276649 112276756 - Gm24527 snRNA snRNA MGP_C57BL6NJ_T0037640.1 MGP_C57BL6NJ_G0020996.1 mouse_genomes_project 13 56996760 57004587 - MGP_C57BL6NJ_P0037640 Pitx1 protein_coding protein_coding MGP_C57BL6NJ_T0037641.1 MGP_C57BL6NJ_G0020996.1 mouse_genomes_project 13 57000183 57009351 - MGP_C57BL6NJ_P0037641 Pitx1 protein_coding protein_coding MGP_C57BL6NJ_T0036952.1 MGP_C57BL6NJ_G0020754.1 mouse_genomes_project 13 22067758 22089036 + MGP_C57BL6NJ_P0036952 Slc17a3 protein_coding protein_coding MGP_C57BL6NJ_T0036953.1 MGP_C57BL6NJ_G0020754.1 mouse_genomes_project 13 22067773 22086681 + MGP_C57BL6NJ_P0036953 Slc17a3 protein_coding protein_coding MGP_C57BL6NJ_T0036954.1 MGP_C57BL6NJ_G0020754.1 mouse_genomes_project 13 22070792 22086435 + MGP_C57BL6NJ_P0036954 Slc17a3 protein_coding protein_coding MGP_C57BL6NJ_T0037481.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55609888 55624674 - 4833439L19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0037482.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55610104 55624696 - MGP_C57BL6NJ_P0037482 4833439L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0037483.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55614724 55624632 - 4833439L19Rik protein_coding retained_intron MGP_C57BL6NJ_T0037484.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55614898 55624679 - 4833439L19Rik protein_coding retained_intron MGP_C57BL6NJ_T0037485.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55615117 55624671 - MGP_C57BL6NJ_P0037485 4833439L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0037486.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55620101 55624685 - 4833439L19Rik protein_coding retained_intron MGP_C57BL6NJ_T0037487.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55620223 55624697 - MGP_C57BL6NJ_P0037487 4833439L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0037488.1 MGP_C57BL6NJ_G0020954.1 mouse_genomes_project 13 55620238 55624666 - MGP_C57BL6NJ_P0037488 4833439L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0037856.1 MGP_C57BL6NJ_G0021073.1 mouse_genomes_project 13 67202989 67257968 - MGP_C57BL6NJ_P0037856 Mfsd14b protein_coding protein_coding MGP_C57BL6NJ_T0037857.1 MGP_C57BL6NJ_G0021073.1 mouse_genomes_project 13 67203377 67257975 - MGP_C57BL6NJ_P0037857 Mfsd14b protein_coding protein_coding MGP_C57BL6NJ_T0037858.1 MGP_C57BL6NJ_G0021073.1 mouse_genomes_project 13 67204902 67208154 - Mfsd14b protein_coding retained_intron MGP_C57BL6NJ_T0006808.1 MGP_C57BL6NJ_G0005634.1 mouse_genomes_project 13 117805430 117809432 + Gm15326 lincRNA lincRNA MGP_C57BL6NJ_T0006809.1 MGP_C57BL6NJ_G0005634.1 mouse_genomes_project 13 117808634 117812225 + Gm15326 lincRNA lincRNA MGP_C57BL6NJ_T0013250.1 MGP_C57BL6NJ_G0011295.1 mouse_genomes_project 13 79048545 79049409 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006698.1 MGP_C57BL6NJ_G0005561.1 mouse_genomes_project 13 30254912 30274419 - G630018N14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006699.1 MGP_C57BL6NJ_G0005561.1 mouse_genomes_project 13 30267750 30273047 - G630018N14Rik lincRNA lincRNA MGP_C57BL6NJ_T0038415.1 MGP_C57BL6NJ_G0021271.1 mouse_genomes_project 13 105464276 105520332 - MGP_C57BL6NJ_P0038415 Ocln protein_coding protein_coding MGP_C57BL6NJ_T0038416.1 MGP_C57BL6NJ_G0021271.1 mouse_genomes_project 13 105476738 105520208 - MGP_C57BL6NJ_P0038416 Ocln protein_coding protein_coding MGP_C57BL6NJ_T0013229.1 MGP_C57BL6NJ_G0011274.1 mouse_genomes_project 13 33180522 33181888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011614.1 MGP_C57BL6NJ_G0009699.1 mouse_genomes_project 13 55472681 55472941 - Gm22668 misc_RNA misc_RNA MGP_C57BL6NJ_T0002732.1 MGP_C57BL6NJ_G0002608.1 mouse_genomes_project 13 17144058 17144653 - MGP_C57BL6NJ_P0002732 Trgv2 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0010142.1 MGP_C57BL6NJ_G0008227.1 mouse_genomes_project 13 59727260 59727366 - Mir6369 miRNA miRNA MGP_C57BL6NJ_T0010144.1 MGP_C57BL6NJ_G0008229.1 mouse_genomes_project 13 61852088 61852189 + Gm24999 miRNA miRNA MGP_C57BL6NJ_T0037052.1 MGP_C57BL6NJ_G0020793.1 mouse_genomes_project 13 26680259 26687704 + MGP_C57BL6NJ_P0037052 Prl4a1 protein_coding protein_coding MGP_C57BL6NJ_T0037964.1 MGP_C57BL6NJ_G0021130.1 mouse_genomes_project 13 75508004 75515342 + MGP_C57BL6NJ_P0037964 Irx2 protein_coding protein_coding MGP_C57BL6NJ_T0037965.1 MGP_C57BL6NJ_G0021130.1 mouse_genomes_project 13 75508155 75511869 + Irx2 protein_coding processed_transcript MGP_C57BL6NJ_T0037966.1 MGP_C57BL6NJ_G0021130.1 mouse_genomes_project 13 75510968 75512024 + MGP_C57BL6NJ_P0037966 Irx2 protein_coding protein_coding MGP_C57BL6NJ_T0037967.1 MGP_C57BL6NJ_G0021130.1 mouse_genomes_project 13 75513228 75514757 + Irx2 protein_coding retained_intron MGP_C57BL6NJ_T0037968.1 MGP_C57BL6NJ_G0021130.1 mouse_genomes_project 13 75513740 75514914 + MGP_C57BL6NJ_P0037968 Irx2 protein_coding protein_coding MGP_C57BL6NJ_T0036941.1 MGP_C57BL6NJ_G0020746.1 mouse_genomes_project 13 21969454 21970373 + MGP_C57BL6NJ_P0036941 Hist1h2bb protein_coding protein_coding MGP_C57BL6NJ_T0037889.1 MGP_C57BL6NJ_G0021087.1 mouse_genomes_project 13 69551643 69569047 - MGP_C57BL6NJ_P0037889 Rslcan18 protein_coding protein_coding MGP_C57BL6NJ_T0037891.1 MGP_C57BL6NJ_G0021087.1 mouse_genomes_project 13 69566033 69571278 - Rslcan18 protein_coding retained_intron MGP_C57BL6NJ_T0003581.1 MGP_C57BL6NJ_G0003273.1 mouse_genomes_project 13 13128636 13129952 - Gm26645 antisense antisense MGP_C57BL6NJ_T0036728.1 MGP_C57BL6NJ_G0020623.1 mouse_genomes_project 13 10923338 10923566 + MGP_C57BL6NJ_P0036728 Gm2399 protein_coding protein_coding MGP_C57BL6NJ_T0037017.1 MGP_C57BL6NJ_G0020772.1 mouse_genomes_project 13 23547969 23566012 - MGP_C57BL6NJ_P0037017 Nrsn1 protein_coding protein_coding MGP_C57BL6NJ_T0037018.1 MGP_C57BL6NJ_G0020772.1 mouse_genomes_project 13 23548121 23558615 - MGP_C57BL6NJ_P0037018 Nrsn1 protein_coding protein_coding MGP_C57BL6NJ_T0037019.1 MGP_C57BL6NJ_G0020772.1 mouse_genomes_project 13 23549337 23558612 - Nrsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0037020.1 MGP_C57BL6NJ_G0020772.1 mouse_genomes_project 13 23565964 23566432 - Nrsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0036651.1 MGP_C57BL6NJ_G0020603.1 mouse_genomes_project 13 5078062 5673519 + MGP_C57BL6NJ_P0036651 Adarb2 protein_coding protein_coding MGP_C57BL6NJ_T0036652.1 MGP_C57BL6NJ_G0020603.1 mouse_genomes_project 13 5078104 5225647 + MGP_C57BL6NJ_P0036652 Adarb2 protein_coding protein_coding MGP_C57BL6NJ_T0036653.1 MGP_C57BL6NJ_G0020603.1 mouse_genomes_project 13 5078109 5677376 + MGP_C57BL6NJ_P0036653 Adarb2 protein_coding protein_coding MGP_C57BL6NJ_T0036654.1 MGP_C57BL6NJ_G0020603.1 mouse_genomes_project 13 5445542 5671000 + MGP_C57BL6NJ_P0036654 Adarb2 protein_coding protein_coding MGP_C57BL6NJ_T0003629.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81411871 81456455 + antisense antisense MGP_C57BL6NJ_T0003630.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81414415 81415735 + antisense antisense MGP_C57BL6NJ_T0003631.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81414455 81452699 + antisense antisense MGP_C57BL6NJ_T0003632.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81417358 81455435 + antisense antisense MGP_C57BL6NJ_T0003633.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81417748 81457286 + antisense antisense MGP_C57BL6NJ_T0003634.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81417845 81449651 + antisense antisense MGP_C57BL6NJ_T0003635.1 MGP_C57BL6NJ_G0003307.1 mouse_genomes_project 13 81418079 81504753 + antisense antisense MGP_C57BL6NJ_T0010162.1 MGP_C57BL6NJ_G0008247.1 mouse_genomes_project 13 98065641 98065702 + Mir5624 miRNA miRNA MGP_C57BL6NJ_T0101203.1 MGP_C57BL6NJ_G0039249.1 mouse_genomes_project 13 124442218 124442348 + Gm26349 snoRNA snoRNA MGP_C57BL6NJ_T0038545.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113937202 114029878 + MGP_C57BL6NJ_P0038545 Depdc1b protein_coding protein_coding MGP_C57BL6NJ_T0038546.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113937238 113945346 + Depdc1b protein_coding retained_intron MGP_C57BL6NJ_T0038547.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113937250 114045243 + MGP_C57BL6NJ_P0038547 Depdc1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038548.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113937292 114015486 + MGP_C57BL6NJ_P0038548 Depdc1b protein_coding protein_coding MGP_C57BL6NJ_T0038549.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113947396 113995664 + Depdc1b protein_coding processed_transcript MGP_C57BL6NJ_T0038550.1 MGP_C57BL6NJ_G0021311.1 mouse_genomes_project 13 113982220 114000744 + Depdc1b protein_coding retained_intron MGP_C57BL6NJ_T0037935.1 MGP_C57BL6NJ_G0021114.1 mouse_genomes_project 13 70421496 70422220 + MGP_C57BL6NJ_P0037935 protein_coding protein_coding MGP_C57BL6NJ_T0013275.1 MGP_C57BL6NJ_G0011320.1 mouse_genomes_project 13 119153795 119154054 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037940.1 MGP_C57BL6NJ_G0021117.1 mouse_genomes_project 13 71174301 71197518 - MGP_C57BL6NJ_P0037940 Mtrr protein_coding protein_coding MGP_C57BL6NJ_T0013203.1 MGP_C57BL6NJ_G0011248.1 mouse_genomes_project 13 22157155 22157520 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037347.1 MGP_C57BL6NJ_G0020908.1 mouse_genomes_project 13 48918703 48966396 - MGP_C57BL6NJ_P0037347 Ptpdc1 protein_coding protein_coding MGP_C57BL6NJ_T0037240.1 MGP_C57BL6NJ_G0020871.1 mouse_genomes_project 13 41015167 41015342 - MGP_C57BL6NJ_P0037240 Gm17364 protein_coding protein_coding MGP_C57BL6NJ_T0038196.1 MGP_C57BL6NJ_G0021197.1 mouse_genomes_project 13 95997977 96022659 - MGP_C57BL6NJ_P0038196 Ckmt2 protein_coding protein_coding MGP_C57BL6NJ_T0006798.1 MGP_C57BL6NJ_G0005625.1 mouse_genomes_project 13 104337332 104343664 + Gm26559 lincRNA lincRNA MGP_C57BL6NJ_T0037271.1 MGP_C57BL6NJ_G0020882.1 mouse_genomes_project 13 43281874 43287479 + MGP_C57BL6NJ_P0037271 Nol7 protein_coding protein_coding MGP_C57BL6NJ_T0036864.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19941029 19957068 + MGP_C57BL6NJ_P0036864 Zfp184 protein_coding protein_coding MGP_C57BL6NJ_T0036865.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19941047 19957352 + MGP_C57BL6NJ_P0036865 Zfp184 protein_coding protein_coding MGP_C57BL6NJ_T0036866.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19941047 19957186 + MGP_C57BL6NJ_P0036866 Zfp184 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036867.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19941072 19946265 + MGP_C57BL6NJ_P0036867 Zfp184 protein_coding protein_coding MGP_C57BL6NJ_T0036868.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19941728 19956922 + MGP_C57BL6NJ_P0036868 Zfp184 protein_coding protein_coding MGP_C57BL6NJ_T0036869.1 MGP_C57BL6NJ_G0020689.1 mouse_genomes_project 13 19945329 19955294 + Zfp184 protein_coding retained_intron MGP_C57BL6NJ_T0006719.1 MGP_C57BL6NJ_G0005575.1 mouse_genomes_project 13 41854328 41855273 + Gm28707 lincRNA lincRNA MGP_C57BL6NJ_T0037035.1 MGP_C57BL6NJ_G0020783.1 mouse_genomes_project 13 25879029 25886474 - MGP_C57BL6NJ_P0037035 Prl2b1 protein_coding protein_coding MGP_C57BL6NJ_T0037036.1 MGP_C57BL6NJ_G0020783.1 mouse_genomes_project 13 25879029 25886474 - MGP_C57BL6NJ_P0037036 Prl2b1 protein_coding protein_coding MGP_C57BL6NJ_T0038036.1 MGP_C57BL6NJ_G0021162.1 mouse_genomes_project 13 78982796 79060022 - MGP_C57BL6NJ_P0038036 Rhobtb3 protein_coding protein_coding MGP_C57BL6NJ_T0038037.1 MGP_C57BL6NJ_G0021162.1 mouse_genomes_project 13 78985272 78998760 - Rhobtb3 protein_coding processed_transcript MGP_C57BL6NJ_T0038038.1 MGP_C57BL6NJ_G0021162.1 mouse_genomes_project 13 79035046 79060080 - MGP_C57BL6NJ_P0038038 Rhobtb3 protein_coding protein_coding MGP_C57BL6NJ_T0013272.1 MGP_C57BL6NJ_G0011317.1 mouse_genomes_project 13 117223349 117223593 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037030.1 MGP_C57BL6NJ_G0020780.1 mouse_genomes_project 13 25750247 25769190 + MGP_C57BL6NJ_P0037030 Prl3a1 protein_coding protein_coding MGP_C57BL6NJ_T0010134.1 MGP_C57BL6NJ_G0008219.1 mouse_genomes_project 13 51198374 51198483 - Gm23952 miRNA miRNA MGP_C57BL6NJ_T0037043.1 MGP_C57BL6NJ_G0020787.1 mouse_genomes_project 13 26086589 26096008 - MGP_C57BL6NJ_P0037043 Prl8a1 protein_coding protein_coding MGP_C57BL6NJ_T0037044.1 MGP_C57BL6NJ_G0020787.1 mouse_genomes_project 13 26087099 26096008 - MGP_C57BL6NJ_P0037044 Prl8a1 protein_coding protein_coding MGP_C57BL6NJ_T0101198.1 MGP_C57BL6NJ_G0039244.1 mouse_genomes_project 13 99731189 99731327 + Snora47 snoRNA snoRNA MGP_C57BL6NJ_T0006674.1 MGP_C57BL6NJ_G0005542.1 mouse_genomes_project 13 6394256 6398886 + Gm26601 lincRNA lincRNA MGP_C57BL6NJ_T0038298.1 MGP_C57BL6NJ_G0021233.1 mouse_genomes_project 13 100407053 100610992 - MGP_C57BL6NJ_P0038298 Sv2c protein_coding protein_coding MGP_C57BL6NJ_T0038299.1 MGP_C57BL6NJ_G0021233.1 mouse_genomes_project 13 100413594 100437327 - Sv2c protein_coding processed_transcript MGP_C57BL6NJ_T0038300.1 MGP_C57BL6NJ_G0021233.1 mouse_genomes_project 13 100428332 100565687 - MGP_C57BL6NJ_P0038300 Sv2c protein_coding protein_coding MGP_C57BL6NJ_T0037872.1 MGP_C57BL6NJ_G0021082.1 mouse_genomes_project 13 69356056 69359294 + MGP_C57BL6NJ_P0037872 protein_coding protein_coding MGP_C57BL6NJ_T0037095.1 MGP_C57BL6NJ_G0020812.1 mouse_genomes_project 13 31841242 31861663 + MGP_C57BL6NJ_P0037095 Wrnip1 protein_coding protein_coding MGP_C57BL6NJ_T0038023.1 MGP_C57BL6NJ_G0021154.1 mouse_genomes_project 13 77333633 77351707 + MGP_C57BL6NJ_P0038023 Ccdc127 protein_coding protein_coding MGP_C57BL6NJ_T0038024.1 MGP_C57BL6NJ_G0021154.1 mouse_genomes_project 13 77333641 77348625 + MGP_C57BL6NJ_P0038024 Ccdc127 protein_coding protein_coding MGP_C57BL6NJ_T0038025.1 MGP_C57BL6NJ_G0021154.1 mouse_genomes_project 13 77333668 77347009 + MGP_C57BL6NJ_P0038025 Ccdc127 protein_coding protein_coding MGP_C57BL6NJ_T0038026.1 MGP_C57BL6NJ_G0021154.1 mouse_genomes_project 13 77333669 77346619 + MGP_C57BL6NJ_P0038026 Ccdc127 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038027.1 MGP_C57BL6NJ_G0021154.1 mouse_genomes_project 13 77333689 77342972 + MGP_C57BL6NJ_P0038027 Ccdc127 protein_coding protein_coding MGP_C57BL6NJ_T0038233.1 MGP_C57BL6NJ_G0021208.1 mouse_genomes_project 13 97038365 97051809 + MGP_C57BL6NJ_P0038233 Mtx3 protein_coding protein_coding MGP_C57BL6NJ_T0006768.1 MGP_C57BL6NJ_G0005606.1 mouse_genomes_project 13 84345436 84351606 - Gm4211 lincRNA lincRNA MGP_C57BL6NJ_T0038308.1 MGP_C57BL6NJ_G0021236.1 mouse_genomes_project 13 100990711 101056604 - MGP_C57BL6NJ_P0038308 Polk protein_coding protein_coding MGP_C57BL6NJ_T0038309.1 MGP_C57BL6NJ_G0021236.1 mouse_genomes_project 13 100992192 101028934 - MGP_C57BL6NJ_P0038309 Polk protein_coding protein_coding MGP_C57BL6NJ_T0010153.1 MGP_C57BL6NJ_G0008238.1 mouse_genomes_project 13 65322050 65322118 + Mir24-1 miRNA miRNA MGP_C57BL6NJ_T0003613.1 MGP_C57BL6NJ_G0003298.1 mouse_genomes_project 13 65355378 65362105 + Gm16133 antisense antisense MGP_C57BL6NJ_T0003614.1 MGP_C57BL6NJ_G0003298.1 mouse_genomes_project 13 65355451 65362102 + Gm16133 antisense antisense MGP_C57BL6NJ_T0037348.1 MGP_C57BL6NJ_G0020909.1 mouse_genomes_project 13 49024107 49027617 + MGP_C57BL6NJ_P0037348 Barx1 protein_coding protein_coding MGP_C57BL6NJ_T0010154.1 MGP_C57BL6NJ_G0008239.1 mouse_genomes_project 13 73880606 73880727 + Mir466f-4 miRNA miRNA MGP_C57BL6NJ_T0037661.1 MGP_C57BL6NJ_G0021006.1 mouse_genomes_project 13 57868840 57898618 + MGP_C57BL6NJ_P0037661 Tgfbi protein_coding protein_coding MGP_C57BL6NJ_T0038660.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125898980 125995302 - MGP_C57BL6NJ_P0038660 Nnt protein_coding protein_coding MGP_C57BL6NJ_T0038661.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125898980 125995302 - MGP_C57BL6NJ_P0038661 Nnt protein_coding protein_coding MGP_C57BL6NJ_T0038662.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125899054 125974435 - MGP_C57BL6NJ_P0038662 Nnt protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038663.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125918515 125995302 - MGP_C57BL6NJ_P0038663 Nnt protein_coding protein_coding MGP_C57BL6NJ_T0038664.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125973719 125995302 - Nnt protein_coding processed_transcript MGP_C57BL6NJ_T0038665.1 MGP_C57BL6NJ_G0021355.1 mouse_genomes_project 13 125979663 125995302 - Nnt protein_coding processed_transcript MGP_C57BL6NJ_T0011607.1 MGP_C57BL6NJ_G0009692.1 mouse_genomes_project 13 11324203 11324493 + Gm25271 misc_RNA misc_RNA MGP_C57BL6NJ_T0010117.1 MGP_C57BL6NJ_G0008202.1 mouse_genomes_project 13 19712237 19712402 + Gm44454 miRNA miRNA MGP_C57BL6NJ_T0037338.1 MGP_C57BL6NJ_G0020905.1 mouse_genomes_project 13 48579183 48581793 + MGP_C57BL6NJ_P0037338 Id4 protein_coding protein_coding MGP_C57BL6NJ_T0013252.1 MGP_C57BL6NJ_G0011297.1 mouse_genomes_project 13 79840178 79841470 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037854.1 MGP_C57BL6NJ_G0021072.1 mouse_genomes_project 13 67184132 67192210 - MGP_C57BL6NJ_P0037854 Prss47 protein_coding protein_coding MGP_C57BL6NJ_T0037855.1 MGP_C57BL6NJ_G0021072.1 mouse_genomes_project 13 67184441 67191297 - MGP_C57BL6NJ_P0037855 Prss47 protein_coding protein_coding MGP_C57BL6NJ_T0010159.1 MGP_C57BL6NJ_G0008244.1 mouse_genomes_project 13 91277320 91277430 + Gm24935 miRNA miRNA MGP_C57BL6NJ_T0003658.1 MGP_C57BL6NJ_G0003320.1 mouse_genomes_project 13 112282023 112290576 + Gm28989 antisense antisense MGP_C57BL6NJ_T0037941.1 MGP_C57BL6NJ_G0021118.1 mouse_genomes_project 13 71197644 71207676 + MGP_C57BL6NJ_P0037941 Fastkd3 protein_coding protein_coding MGP_C57BL6NJ_T0037074.1 MGP_C57BL6NJ_G0020801.1 mouse_genomes_project 13 29524435 29576682 + MGP_C57BL6NJ_P0037074 Dusp22 protein_coding protein_coding MGP_C57BL6NJ_T0037075.1 MGP_C57BL6NJ_G0020801.1 mouse_genomes_project 13 29524497 29571576 + MGP_C57BL6NJ_P0037075 Dusp22 protein_coding protein_coding MGP_C57BL6NJ_T0037076.1 MGP_C57BL6NJ_G0020801.1 mouse_genomes_project 13 29524546 29574347 + MGP_C57BL6NJ_P0037076 Dusp22 protein_coding protein_coding MGP_C57BL6NJ_T0013210.1 MGP_C57BL6NJ_G0011255.1 mouse_genomes_project 13 23906230 23907346 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003610.1 MGP_C57BL6NJ_G0003297.1 mouse_genomes_project 13 59692195 59709819 + Gm26555 antisense antisense MGP_C57BL6NJ_T0003611.1 MGP_C57BL6NJ_G0003297.1 mouse_genomes_project 13 59692195 59712376 + Gm26555 antisense antisense MGP_C57BL6NJ_T0003612.1 MGP_C57BL6NJ_G0003297.1 mouse_genomes_project 13 59692203 59712377 + Gm26555 antisense antisense MGP_C57BL6NJ_T0038492.1 MGP_C57BL6NJ_G0021291.1 mouse_genomes_project 13 109491066 109516499 - MGP_C57BL6NJ_P0038492 Ppwd1 protein_coding protein_coding MGP_C57BL6NJ_T0036807.1 MGP_C57BL6NJ_G0020653.1 mouse_genomes_project 13 18952544 18953495 - MGP_C57BL6NJ_P0036807 Olfr1370 protein_coding protein_coding MGP_C57BL6NJ_T0038030.1 MGP_C57BL6NJ_G0021157.1 mouse_genomes_project 13 77691086 77744498 + MGP_C57BL6NJ_P0038030 Erap1 protein_coding protein_coding MGP_C57BL6NJ_T0037374.1 MGP_C57BL6NJ_G0020916.1 mouse_genomes_project 13 49682876 49732203 - MGP_C57BL6NJ_P0037374 Fgd3 protein_coding protein_coding MGP_C57BL6NJ_T0037375.1 MGP_C57BL6NJ_G0020916.1 mouse_genomes_project 13 49684332 49720243 - MGP_C57BL6NJ_P0037375 Fgd3 protein_coding protein_coding MGP_C57BL6NJ_T0037376.1 MGP_C57BL6NJ_G0020916.1 mouse_genomes_project 13 49694605 49743223 - MGP_C57BL6NJ_P0037376 Fgd3 protein_coding protein_coding MGP_C57BL6NJ_T0006686.1 MGP_C57BL6NJ_G0005552.1 mouse_genomes_project 13 25788408 25800010 + 4930511O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0002727.1 MGP_C57BL6NJ_G0002605.1 mouse_genomes_project 13 16992567 16993100 + MGP_C57BL6NJ_P0002727 Tcrg-V4 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0037781.1 MGP_C57BL6NJ_G0021041.1 mouse_genomes_project 13 62585230 62590867 - MGP_C57BL6NJ_P0037781 Ctsj protein_coding protein_coding MGP_C57BL6NJ_T0101184.1 MGP_C57BL6NJ_G0039230.1 mouse_genomes_project 13 59739461 59739603 + Gm24284 snoRNA snoRNA MGP_C57BL6NJ_T0037540.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869352 55876752 + MGP_C57BL6NJ_P0037540 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037541.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869378 55876744 + MGP_C57BL6NJ_P0037541 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037542.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869438 55876163 + MGP_C57BL6NJ_P0037542 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037543.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869570 55876094 + MGP_C57BL6NJ_P0037543 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037544.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869570 55876198 + MGP_C57BL6NJ_P0037544 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037545.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55869620 55875124 + MGP_C57BL6NJ_P0037545 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037546.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55872715 55876141 + MGP_C57BL6NJ_P0037546 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037547.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55872846 55876751 + MGP_C57BL6NJ_P0037547 Tspan17 protein_coding protein_coding MGP_C57BL6NJ_T0037548.1 MGP_C57BL6NJ_G0020965.1 mouse_genomes_project 13 55875359 55876744 + Tspan17 protein_coding retained_intron MGP_C57BL6NJ_T0036910.1 MGP_C57BL6NJ_G0020726.1 mouse_genomes_project 13 21368084 21369011 - MGP_C57BL6NJ_P0036910 Vmn1r222 protein_coding protein_coding MGP_C57BL6NJ_T0036854.1 MGP_C57BL6NJ_G0020680.1 mouse_genomes_project 13 19693730 19694504 + MGP_C57BL6NJ_P0036854 Hist1h4j protein_coding protein_coding MGP_C57BL6NJ_T0036860.1 MGP_C57BL6NJ_G0020686.1 mouse_genomes_project 13 19803197 19803590 - MGP_C57BL6NJ_P0036860 Hist1h4m protein_coding protein_coding MGP_C57BL6NJ_T0036606.1 MGP_C57BL6NJ_G0020586.1 mouse_genomes_project 13 488005 498645 + MGP_C57BL6NJ_P0036606 Tubal3 protein_coding protein_coding MGP_C57BL6NJ_T0036887.1 MGP_C57BL6NJ_G0020703.1 mouse_genomes_project 13 20356924 20357821 + MGP_C57BL6NJ_P0036887 Vmn1r197 protein_coding protein_coding MGP_C57BL6NJ_T0037368.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49650911 49669568 - MGP_C57BL6NJ_P0037368 Susd3 protein_coding protein_coding MGP_C57BL6NJ_T0037369.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49651050 49669980 - MGP_C57BL6NJ_P0037369 Susd3 protein_coding protein_coding MGP_C57BL6NJ_T0037370.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49651524 49669937 - MGP_C57BL6NJ_P0037370 Susd3 protein_coding protein_coding MGP_C57BL6NJ_T0037371.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49657606 49660540 - Susd3 protein_coding processed_transcript MGP_C57BL6NJ_T0037372.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49657908 49669428 - MGP_C57BL6NJ_P0037372 Susd3 protein_coding protein_coding MGP_C57BL6NJ_T0037373.1 MGP_C57BL6NJ_G0020915.1 mouse_genomes_project 13 49658825 49662822 - Susd3 protein_coding processed_transcript MGP_C57BL6NJ_T0037599.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56618165 56633821 - MGP_C57BL6NJ_P0037599 protein_coding protein_coding MGP_C57BL6NJ_T0037600.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56618165 56633821 - MGP_C57BL6NJ_P0037600 protein_coding protein_coding MGP_C57BL6NJ_T0037601.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56618680 56633771 - MGP_C57BL6NJ_P0037601 protein_coding protein_coding MGP_C57BL6NJ_T0037602.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56619861 56633776 - protein_coding retained_intron MGP_C57BL6NJ_T0037603.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56626113 56627903 - protein_coding retained_intron MGP_C57BL6NJ_T0037604.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56626135 56628016 - protein_coding retained_intron MGP_C57BL6NJ_T0037605.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56627308 56633392 - MGP_C57BL6NJ_P0037605 protein_coding protein_coding MGP_C57BL6NJ_T0037606.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56627425 56632419 - protein_coding processed_transcript MGP_C57BL6NJ_T0037607.1 MGP_C57BL6NJ_G0020983.1 mouse_genomes_project 13 56628038 56629728 - protein_coding retained_intron MGP_C57BL6NJ_T0037096.1 MGP_C57BL6NJ_G0020813.1 mouse_genomes_project 13 31841661 31842054 - MGP_C57BL6NJ_P0037096 D930007J09Rik protein_coding protein_coding MGP_C57BL6NJ_T0037768.1 MGP_C57BL6NJ_G0021031.1 mouse_genomes_project 13 61727760 61730721 - MGP_C57BL6NJ_P0037768 Gas1 protein_coding protein_coding MGP_C57BL6NJ_T0037186.1 MGP_C57BL6NJ_G0020847.1 mouse_genomes_project 13 36270224 36456245 - MGP_C57BL6NJ_P0037186 F13a1 protein_coding protein_coding MGP_C57BL6NJ_T0037187.1 MGP_C57BL6NJ_G0020847.1 mouse_genomes_project 13 36270224 36462318 - MGP_C57BL6NJ_P0037187 F13a1 protein_coding protein_coding MGP_C57BL6NJ_T0003595.1 MGP_C57BL6NJ_G0003285.1 mouse_genomes_project 13 28725242 28727221 + Gm11365 antisense antisense MGP_C57BL6NJ_T0036806.1 MGP_C57BL6NJ_G0020652.1 mouse_genomes_project 13 18664716 18904615 + MGP_C57BL6NJ_P0036806 Aoah protein_coding protein_coding MGP_C57BL6NJ_T0098821.1 MGP_C57BL6NJ_G0036885.1 mouse_genomes_project 13 71545097 71545610 - pseudogene pseudogene MGP_C57BL6NJ_T0013259.1 MGP_C57BL6NJ_G0011304.1 mouse_genomes_project 13 91625619 91626625 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038347.1 MGP_C57BL6NJ_G0021249.1 mouse_genomes_project 13 102981551 102992298 + MGP_C57BL6NJ_P0038347 Ankra2 protein_coding protein_coding MGP_C57BL6NJ_T0038348.1 MGP_C57BL6NJ_G0021249.1 mouse_genomes_project 13 102981553 102992297 + MGP_C57BL6NJ_P0038348 Ankra2 protein_coding protein_coding MGP_C57BL6NJ_T0038349.1 MGP_C57BL6NJ_G0021249.1 mouse_genomes_project 13 102981556 102992299 + MGP_C57BL6NJ_P0038349 Ankra2 protein_coding protein_coding MGP_C57BL6NJ_T0038350.1 MGP_C57BL6NJ_G0021249.1 mouse_genomes_project 13 102981621 102993131 + MGP_C57BL6NJ_P0038350 Ankra2 protein_coding protein_coding MGP_C57BL6NJ_T0038351.1 MGP_C57BL6NJ_G0021249.1 mouse_genomes_project 13 102986810 102989848 + Ankra2 protein_coding retained_intron MGP_C57BL6NJ_T0102812.1 MGP_C57BL6NJ_G0040606.1 mouse_genomes_project 13 21050072 21050974 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006800.1 MGP_C57BL6NJ_G0005627.1 mouse_genomes_project 13 106464512 106530839 + lincRNA lincRNA MGP_C57BL6NJ_T0037119.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33073581 33176351 - MGP_C57BL6NJ_P0037119 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037120.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33073581 33101443 - MGP_C57BL6NJ_P0037120 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037121.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33073581 33101328 - MGP_C57BL6NJ_P0037121 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037122.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33073590 33101241 - MGP_C57BL6NJ_P0037122 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037123.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33073895 33077723 - Serpinb6a protein_coding processed_transcript MGP_C57BL6NJ_T0037124.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33074453 33176351 - MGP_C57BL6NJ_P0037124 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037125.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33078589 33092608 - MGP_C57BL6NJ_P0037125 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037126.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33078605 33101200 - MGP_C57BL6NJ_P0037126 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037127.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33078682 33092581 - MGP_C57BL6NJ_P0037127 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037128.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33079287 33101223 - Serpinb6a protein_coding retained_intron MGP_C57BL6NJ_T0037129.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33080977 33101222 - MGP_C57BL6NJ_P0037129 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037130.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33081049 33176324 - MGP_C57BL6NJ_P0037130 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037131.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33086857 33101199 - MGP_C57BL6NJ_P0037131 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037132.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33086870 33176343 - MGP_C57BL6NJ_P0037132 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037133.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33088315 33176297 - MGP_C57BL6NJ_P0037133 Serpinb6a protein_coding protein_coding MGP_C57BL6NJ_T0037136.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33138689 33176324 - Serpinb6a protein_coding processed_transcript MGP_C57BL6NJ_T0037137.1 MGP_C57BL6NJ_G0020827.1 mouse_genomes_project 13 33158167 33176327 - Serpinb6a protein_coding processed_transcript MGP_C57BL6NJ_T0013226.1 MGP_C57BL6NJ_G0011271.1 mouse_genomes_project 13 30834553 30836990 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037622.1 MGP_C57BL6NJ_G0020987.1 mouse_genomes_project 13 56687492 56721138 - MGP_C57BL6NJ_P0037622 Fam193b protein_coding protein_coding MGP_C57BL6NJ_T0036734.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11539459 11582230 - MGP_C57BL6NJ_P0036734 Tbce protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036735.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11539461 11547014 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036736.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11539461 11543107 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036737.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11539462 11582289 - MGP_C57BL6NJ_P0036737 Tbce protein_coding protein_coding MGP_C57BL6NJ_T0036738.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11539463 11582289 - MGP_C57BL6NJ_P0036738 Tbce protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036739.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11544573 11582272 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036740.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11546698 11551354 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036741.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11546736 11550561 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036742.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11546743 11551347 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036743.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11546751 11551013 - Tbce protein_coding processed_transcript MGP_C57BL6NJ_T0036744.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11551894 11582263 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036745.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11557575 11582247 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0036746.1 MGP_C57BL6NJ_G0020628.1 mouse_genomes_project 13 11562498 11582268 - Tbce protein_coding retained_intron MGP_C57BL6NJ_T0006742.1 MGP_C57BL6NJ_G0005587.1 mouse_genomes_project 13 54355809 54366689 - Gm43262 lincRNA lincRNA MGP_C57BL6NJ_T0037001.1 MGP_C57BL6NJ_G0020766.1 mouse_genomes_project 13 23123182 23135834 + MGP_C57BL6NJ_P0037001 Tdp2 protein_coding protein_coding MGP_C57BL6NJ_T0037002.1 MGP_C57BL6NJ_G0020766.1 mouse_genomes_project 13 23123325 23132244 + Tdp2 protein_coding processed_transcript MGP_C57BL6NJ_T0037972.1 MGP_C57BL6NJ_G0021133.1 mouse_genomes_project 13 76212325 76220981 - MGP_C57BL6NJ_P0037972 Ndufs6 protein_coding protein_coding MGP_C57BL6NJ_T0037973.1 MGP_C57BL6NJ_G0021133.1 mouse_genomes_project 13 76212330 76220891 - MGP_C57BL6NJ_P0037973 Ndufs6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036936.1 MGP_C57BL6NJ_G0020743.1 mouse_genomes_project 13 21911230 21911625 - MGP_C57BL6NJ_P0036936 Hist1h4c protein_coding protein_coding MGP_C57BL6NJ_T0006680.1 MGP_C57BL6NJ_G0005547.1 mouse_genomes_project 13 22588312 22589386 - Gm11342 lincRNA lincRNA MGP_C57BL6NJ_T0037209.1 MGP_C57BL6NJ_G0020855.1 mouse_genomes_project 13 37894323 38052013 + MGP_C57BL6NJ_P0037209 Bmp6 protein_coding protein_coding MGP_C57BL6NJ_T0038177.1 MGP_C57BL6NJ_G0021192.1 mouse_genomes_project 13 95016031 95018793 + MGP_C57BL6NJ_P0038177 Rps23 protein_coding protein_coding MGP_C57BL6NJ_T0102810.1 MGP_C57BL6NJ_G0040604.1 mouse_genomes_project 13 21045934 21046369 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010109.1 MGP_C57BL6NJ_G0008194.1 mouse_genomes_project 13 2512439 2512530 - Gm26043 miRNA miRNA MGP_C57BL6NJ_T0038325.1 MGP_C57BL6NJ_G0021240.1 mouse_genomes_project 13 101444062 101472043 + MGP_C57BL6NJ_P0038325 Gcnt4 protein_coding protein_coding MGP_C57BL6NJ_T0037798.1 MGP_C57BL6NJ_G0021054.1 mouse_genomes_project 13 64963091 64965116 - MGP_C57BL6NJ_P0037798 protein_coding protein_coding MGP_C57BL6NJ_T0036820.1 MGP_C57BL6NJ_G0020660.1 mouse_genomes_project 13 19253149 19254204 + MGP_C57BL6NJ_P0036820 Olfr1367 protein_coding protein_coding MGP_C57BL6NJ_T0102804.1 MGP_C57BL6NJ_G0040598.1 mouse_genomes_project 13 20723749 20724746 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037655.1 MGP_C57BL6NJ_G0021003.1 mouse_genomes_project 13 57724357 57727327 - MGP_C57BL6NJ_P0037655 Il9 protein_coding protein_coding MGP_C57BL6NJ_T0038039.1 MGP_C57BL6NJ_G0021163.1 mouse_genomes_project 13 79084887 79117864 + MGP_C57BL6NJ_P0038039 Spata9 protein_coding protein_coding MGP_C57BL6NJ_T0098999.1 MGP_C57BL6NJ_G0037063.1 mouse_genomes_project 13 101414430 101414545 + Gm27792 rRNA rRNA MGP_C57BL6NJ_T0036934.1 MGP_C57BL6NJ_G0020741.1 mouse_genomes_project 13 21896572 21897324 - MGP_C57BL6NJ_P0036934 Hist1h2ac protein_coding protein_coding MGP_C57BL6NJ_T0003641.1 MGP_C57BL6NJ_G0003310.1 mouse_genomes_project 13 96007195 96007808 + 1700119I11Rik antisense antisense MGP_C57BL6NJ_T0003642.1 MGP_C57BL6NJ_G0003310.1 mouse_genomes_project 13 96007248 96007802 + 1700119I11Rik antisense antisense MGP_C57BL6NJ_T0038212.1 MGP_C57BL6NJ_G0021200.1 mouse_genomes_project 13 96455724 96456921 + MGP_C57BL6NJ_P0038212 Gm20379 protein_coding protein_coding MGP_C57BL6NJ_T0013177.1 MGP_C57BL6NJ_G0011222.1 mouse_genomes_project 13 2119318 2119558 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037999.1 MGP_C57BL6NJ_G0021144.1 mouse_genomes_project 13 76889986 76913820 + MGP_C57BL6NJ_P0037999 Brd9 protein_coding protein_coding MGP_C57BL6NJ_T0011604.1 MGP_C57BL6NJ_G0009689.1 mouse_genomes_project 13 6642757 6643005 - Gm23496 misc_RNA misc_RNA MGP_C57BL6NJ_T0013245.1 MGP_C57BL6NJ_G0011290.1 mouse_genomes_project 13 71435571 71436324 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037948.1 MGP_C57BL6NJ_G0021123.1 mouse_genomes_project 13 72245390 72285768 - MGP_C57BL6NJ_P0037948 Srd5a1 protein_coding protein_coding MGP_C57BL6NJ_T0037949.1 MGP_C57BL6NJ_G0021123.1 mouse_genomes_project 13 72268625 72285674 - Srd5a1 protein_coding processed_transcript MGP_C57BL6NJ_T0038055.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80197412 80296542 - MGP_C57BL6NJ_P0038055 Slf1 protein_coding protein_coding MGP_C57BL6NJ_T0038056.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80198295 80201722 - Slf1 protein_coding retained_intron MGP_C57BL6NJ_T0038057.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80259734 80296534 - MGP_C57BL6NJ_P0038057 Slf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038058.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80262373 80296534 - MGP_C57BL6NJ_P0038058 Slf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038059.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80263330 80292174 - MGP_C57BL6NJ_P0038059 Slf1 protein_coding protein_coding MGP_C57BL6NJ_T0038060.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80263416 80296507 - MGP_C57BL6NJ_P0038060 Slf1 protein_coding protein_coding MGP_C57BL6NJ_T0038061.1 MGP_C57BL6NJ_G0021169.1 mouse_genomes_project 13 80264356 80296529 - Slf1 protein_coding retained_intron MGP_C57BL6NJ_T0037203.1 MGP_C57BL6NJ_G0020852.1 mouse_genomes_project 13 37534427 37559410 + MGP_C57BL6NJ_P0037203 Riok1 protein_coding protein_coding MGP_C57BL6NJ_T0013213.1 MGP_C57BL6NJ_G0011258.1 mouse_genomes_project 13 25192967 25193389 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010152.1 MGP_C57BL6NJ_G0008237.1 mouse_genomes_project 13 65322041 65322126 - Mir3074-1 miRNA miRNA MGP_C57BL6NJ_T0006692.1 MGP_C57BL6NJ_G0005555.1 mouse_genomes_project 13 28856514 28862591 + Gm11368 lincRNA lincRNA MGP_C57BL6NJ_T0003583.1 MGP_C57BL6NJ_G0003275.1 mouse_genomes_project 13 19726685 19728037 + Gm11274 antisense antisense MGP_C57BL6NJ_T0102817.1 MGP_C57BL6NJ_G0040611.1 mouse_genomes_project 13 21342520 21343627 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036717.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9624376 9632395 - Lgals8 protein_coding retained_intron MGP_C57BL6NJ_T0036718.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9625804 9645105 - MGP_C57BL6NJ_P0036718 Lgals8 protein_coding protein_coding MGP_C57BL6NJ_T0036719.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9625804 9645144 - MGP_C57BL6NJ_P0036719 Lgals8 protein_coding protein_coding MGP_C57BL6NJ_T0036720.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9635078 9640185 - Lgals8 protein_coding retained_intron MGP_C57BL6NJ_T0036721.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9636399 9638676 - Lgals8 protein_coding retained_intron MGP_C57BL6NJ_T0036722.1 MGP_C57BL6NJ_G0020617.1 mouse_genomes_project 13 9642919 9644696 - Lgals8 protein_coding processed_transcript MGP_C57BL6NJ_T0099337.1 MGP_C57BL6NJ_G0037397.1 mouse_genomes_project 13 28012434 28013278 - Gm11364 sense_intronic sense_intronic MGP_C57BL6NJ_T0038573.1 MGP_C57BL6NJ_G0021315.1 mouse_genomes_project 13 116186459 116193378 + MGP_C57BL6NJ_P0038573 Plk2 protein_coding protein_coding MGP_C57BL6NJ_T0036760.1 MGP_C57BL6NJ_G0020633.1 mouse_genomes_project 13 12225089 12241675 + MGP_C57BL6NJ_P0036760 Psma2 protein_coding protein_coding MGP_C57BL6NJ_T0037143.1 MGP_C57BL6NJ_G0020831.1 mouse_genomes_project 13 33315518 33318338 - MGP_C57BL6NJ_P0037143 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0013253.1 MGP_C57BL6NJ_G0011298.1 mouse_genomes_project 13 80091147 80091816 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006745.1 MGP_C57BL6NJ_G0005590.1 mouse_genomes_project 13 55995347 55996592 + 5330429C05Rik lincRNA lincRNA MGP_C57BL6NJ_T0036671.1 MGP_C57BL6NJ_G0020605.1 mouse_genomes_project 13 5809414 5819027 + MGP_C57BL6NJ_P0036671 Idi1 protein_coding protein_coding MGP_C57BL6NJ_T0036672.1 MGP_C57BL6NJ_G0020605.1 mouse_genomes_project 13 5809415 5819027 + MGP_C57BL6NJ_P0036672 Idi1 protein_coding protein_coding MGP_C57BL6NJ_T0036673.1 MGP_C57BL6NJ_G0020605.1 mouse_genomes_project 13 5809446 5811640 + MGP_C57BL6NJ_P0036673 Idi1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036674.1 MGP_C57BL6NJ_G0020605.1 mouse_genomes_project 13 5810655 5819027 + Idi1 protein_coding retained_intron MGP_C57BL6NJ_T0037770.1 MGP_C57BL6NJ_G0021033.1 mouse_genomes_project 13 62163609 62348280 + MGP_C57BL6NJ_P0037770 Dapk1 protein_coding protein_coding MGP_C57BL6NJ_T0037771.1 MGP_C57BL6NJ_G0021033.1 mouse_genomes_project 13 62163708 62348288 + MGP_C57BL6NJ_P0037771 Dapk1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037772.1 MGP_C57BL6NJ_G0021033.1 mouse_genomes_project 13 62163873 62348280 + MGP_C57BL6NJ_P0037772 Dapk1 protein_coding protein_coding MGP_C57BL6NJ_T0037115.1 MGP_C57BL6NJ_G0020825.1 mouse_genomes_project 13 32992521 33005580 - MGP_C57BL6NJ_P0037115 Serpinb6e protein_coding protein_coding MGP_C57BL6NJ_T0037116.1 MGP_C57BL6NJ_G0020825.1 mouse_genomes_project 13 33003174 33005580 - MGP_C57BL6NJ_P0037116 Serpinb6e protein_coding protein_coding MGP_C57BL6NJ_T0099875.1 MGP_C57BL6NJ_G0037921.1 mouse_genomes_project 13 31796055 31796164 + Gm27342 snRNA snRNA MGP_C57BL6NJ_T0003591.1 MGP_C57BL6NJ_G0003282.1 mouse_genomes_project 13 22190096 22199463 + Gm11339 antisense antisense MGP_C57BL6NJ_T0010148.1 MGP_C57BL6NJ_G0008233.1 mouse_genomes_project 13 64715298 64715406 + Mir713 miRNA miRNA MGP_C57BL6NJ_T0038632.1 MGP_C57BL6NJ_G0021342.1 mouse_genomes_project 13 120588325 120594778 - MGP_C57BL6NJ_P0038632 Fst protein_coding protein_coding MGP_C57BL6NJ_T0038633.1 MGP_C57BL6NJ_G0021342.1 mouse_genomes_project 13 120589486 120594634 - MGP_C57BL6NJ_P0038633 Fst protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037470.1 MGP_C57BL6NJ_G0020951.1 mouse_genomes_project 13 55410670 55423062 + MGP_C57BL6NJ_P0037470 Cplx2 protein_coding protein_coding MGP_C57BL6NJ_T0011611.1 MGP_C57BL6NJ_G0009696.1 mouse_genomes_project 13 42917136 42917399 - Gm26086 misc_RNA misc_RNA MGP_C57BL6NJ_T0011617.1 MGP_C57BL6NJ_G0009702.1 mouse_genomes_project 13 57970721 57970846 + Gm27834 misc_RNA misc_RNA MGP_C57BL6NJ_T0036892.1 MGP_C57BL6NJ_G0020708.1 mouse_genomes_project 13 20541256 20542165 - MGP_C57BL6NJ_P0036892 Vmn1r202 protein_coding protein_coding MGP_C57BL6NJ_T0017812.1 MGP_C57BL6NJ_G0015644.1 mouse_genomes_project 13 21980228 21981646 - 4930558J22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0038508.1 MGP_C57BL6NJ_G0021299.1 mouse_genomes_project 13 110491338 110645533 - MGP_C57BL6NJ_P0038508 Rnf180 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0038509.1 MGP_C57BL6NJ_G0021299.1 mouse_genomes_project 13 110510047 110645533 - MGP_C57BL6NJ_P0038509 Rnf180 protein_coding protein_coding MGP_C57BL6NJ_T0036835.1 MGP_C57BL6NJ_G0020666.1 mouse_genomes_project 13 19411381 19418990 + MGP_C57BL6NJ_P0036835 Zkscan4 protein_coding protein_coding MGP_C57BL6NJ_T0101186.1 MGP_C57BL6NJ_G0039232.1 mouse_genomes_project 13 72864509 72864637 + Gm26018 snoRNA snoRNA MGP_C57BL6NJ_T0001014.1 MGP_C57BL6NJ_G0000923.1 mouse_genomes_project 13 70006208 70008048 + TEC TEC MGP_C57BL6NJ_T0001008.1 MGP_C57BL6NJ_G0000917.1 mouse_genomes_project 13 38865421 38865784 + TEC TEC MGP_C57BL6NJ_T0036767.1 MGP_C57BL6NJ_G0020636.1 mouse_genomes_project 13 13705945 13724139 + MGP_C57BL6NJ_P0036767 Inhba protein_coding protein_coding MGP_C57BL6NJ_T0036768.1 MGP_C57BL6NJ_G0020636.1 mouse_genomes_project 13 13708569 13724162 + MGP_C57BL6NJ_P0036768 Inhba protein_coding protein_coding MGP_C57BL6NJ_T0037591.1 MGP_C57BL6NJ_G0020978.1 mouse_genomes_project 13 56531634 56546674 + MGP_C57BL6NJ_P0037591 Slc34a1 protein_coding protein_coding MGP_C57BL6NJ_T0037584.1 MGP_C57BL6NJ_G0020975.1 mouse_genomes_project 13 56449721 56454319 - MGP_C57BL6NJ_P0037584 Mxd3 protein_coding protein_coding MGP_C57BL6NJ_T0037585.1 MGP_C57BL6NJ_G0020975.1 mouse_genomes_project 13 56450046 56454294 - Mxd3 protein_coding retained_intron MGP_C57BL6NJ_T0037586.1 MGP_C57BL6NJ_G0020975.1 mouse_genomes_project 13 56450276 56453913 - Mxd3 protein_coding processed_transcript MGP_C57BL6NJ_T0036655.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5715564 5789915 - MGP_C57BL6NJ_P0036655 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036656.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5715591 5789229 - MGP_C57BL6NJ_P0036656 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036657.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5720671 5759702 - MGP_C57BL6NJ_P0036657 Wdr37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036658.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5729741 5761623 - MGP_C57BL6NJ_P0036658 Wdr37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036659.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5729799 5765770 - MGP_C57BL6NJ_P0036659 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036660.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5745287 5747133 - Wdr37 protein_coding retained_intron MGP_C57BL6NJ_T0036661.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5752662 5771633 - MGP_C57BL6NJ_P0036661 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036662.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5759744 5789921 - MGP_C57BL6NJ_P0036662 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036663.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5761607 5774096 - MGP_C57BL6NJ_P0036663 Wdr37 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036664.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5762544 5789208 - MGP_C57BL6NJ_P0036664 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036665.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5764731 5789164 - MGP_C57BL6NJ_P0036665 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036666.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5764734 5774093 - MGP_C57BL6NJ_P0036666 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036667.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5765387 5789179 - Wdr37 protein_coding processed_transcript MGP_C57BL6NJ_T0036668.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5765735 5771646 - Wdr37 protein_coding processed_transcript MGP_C57BL6NJ_T0036669.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5768981 5790094 - MGP_C57BL6NJ_P0036669 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0036670.1 MGP_C57BL6NJ_G0020604.1 mouse_genomes_project 13 5774006 5789192 - MGP_C57BL6NJ_P0036670 Wdr37 protein_coding protein_coding MGP_C57BL6NJ_T0013220.1 MGP_C57BL6NJ_G0011265.1 mouse_genomes_project 13 28947358 28947481 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017825.1 MGP_C57BL6NJ_G0015650.1 mouse_genomes_project 13 61286838 61288813 + Etohd2 processed_transcript processed_transcript MGP_C57BL6NJ_T0017826.1 MGP_C57BL6NJ_G0015650.1 mouse_genomes_project 13 61286839 61290554 + Etohd2 processed_transcript processed_transcript MGP_C57BL6NJ_T0003636.1 MGP_C57BL6NJ_G0003308.1 mouse_genomes_project 13 87819966 87822561 - A230107N01Rik antisense antisense MGP_C57BL6NJ_T0003637.1 MGP_C57BL6NJ_G0003308.1 mouse_genomes_project 13 87820995 87822486 - A230107N01Rik antisense antisense MGP_C57BL6NJ_T0036976.1 MGP_C57BL6NJ_G0020761.1 mouse_genomes_project 13 22627034 22728243 + MGP_C57BL6NJ_P0036976 Cmah protein_coding protein_coding MGP_C57BL6NJ_T0036977.1 MGP_C57BL6NJ_G0020761.1 mouse_genomes_project 13 22648239 22692547 + Cmah protein_coding processed_transcript MGP_C57BL6NJ_T0036978.1 MGP_C57BL6NJ_G0020761.1 mouse_genomes_project 13 22673891 22692106 + Cmah protein_coding processed_transcript MGP_C57BL6NJ_T0036979.1 MGP_C57BL6NJ_G0020761.1 mouse_genomes_project 13 22674214 22693516 + Cmah protein_coding processed_transcript MGP_C57BL6NJ_T0001003.1 MGP_C57BL6NJ_G0000913.1 mouse_genomes_project 13 15796275 15801671 + TEC TEC MGP_C57BL6NJ_T0036909.1 MGP_C57BL6NJ_G0020725.1 mouse_genomes_project 13 21342633 21343595 + MGP_C57BL6NJ_P0036909 Vmn1r189 protein_coding protein_coding MGP_C57BL6NJ_T0037884.1 MGP_C57BL6NJ_G0021085.1 mouse_genomes_project 13 69523550 69552922 - Gm28557 protein_coding processed_transcript MGP_C57BL6NJ_T0037885.1 MGP_C57BL6NJ_G0021085.1 mouse_genomes_project 13 69523550 69563568 - MGP_C57BL6NJ_P0037885 Gm28557 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037886.1 MGP_C57BL6NJ_G0021085.1 mouse_genomes_project 13 69523551 69553007 - MGP_C57BL6NJ_P0037886 Gm28557 protein_coding protein_coding MGP_C57BL6NJ_T0037888.1 MGP_C57BL6NJ_G0021085.1 mouse_genomes_project 13 69528074 69553007 - Gm28557 protein_coding processed_transcript MGP_C57BL6NJ_T0037890.1 MGP_C57BL6NJ_G0021085.1 mouse_genomes_project 13 69560399 69563623 - Gm28557 protein_coding processed_transcript MGP_C57BL6NJ_T0038343.1 MGP_C57BL6NJ_G0021245.1 mouse_genomes_project 13 101754901 101777748 - MGP_C57BL6NJ_P0038343 Hexb protein_coding protein_coding MGP_C57BL6NJ_T0006804.1 MGP_C57BL6NJ_G0005630.1 mouse_genomes_project 13 117223513 117233270 - Gm6270 lincRNA lincRNA MGP_C57BL6NJ_T0037638.1 MGP_C57BL6NJ_G0020995.1 mouse_genomes_project 13 56952257 56978176 + MGP_C57BL6NJ_P0037638 Catsper3 protein_coding protein_coding MGP_C57BL6NJ_T0037639.1 MGP_C57BL6NJ_G0020995.1 mouse_genomes_project 13 56952268 56978207 + MGP_C57BL6NJ_P0037639 Catsper3 protein_coding protein_coding MGP_C57BL6NJ_T0037349.1 MGP_C57BL6NJ_G0020910.1 mouse_genomes_project 13 49179728 49253484 - MGP_C57BL6NJ_P0037349 Phf2 protein_coding protein_coding MGP_C57BL6NJ_T0038520.1 MGP_C57BL6NJ_G0021302.1 mouse_genomes_project 13 112450788 112465938 + MGP_C57BL6NJ_P0038520 Dimt1 protein_coding protein_coding MGP_C57BL6NJ_T0037942.1 MGP_C57BL6NJ_G0021119.1 mouse_genomes_project 13 71212791 71229489 + MGP_C57BL6NJ_P0037942 1700001L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0037113.1 MGP_C57BL6NJ_G0020823.1 mouse_genomes_project 13 32320627 32333658 + MGP_C57BL6NJ_P0037113 protein_coding protein_coding MGP_C57BL6NJ_T0011613.1 MGP_C57BL6NJ_G0009698.1 mouse_genomes_project 13 51755215 51755341 + Gm22199 misc_RNA misc_RNA MGP_C57BL6NJ_T0002730.1 MGP_C57BL6NJ_G0002607.1 mouse_genomes_project 13 16999803 17000251 + MGP_C57BL6NJ_P0002730 Tcrg-V5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0002731.1 MGP_C57BL6NJ_G0002607.1 mouse_genomes_project 13 16999958 17000251 + MGP_C57BL6NJ_P0002731 Tcrg-V5 TR_V_gene TR_V_gene MGP_C57BL6NJ_T0036782.1 MGP_C57BL6NJ_G0020644.1 mouse_genomes_project 13 16750344 16953281 + MGP_C57BL6NJ_P0036782 Amph protein_coding protein_coding MGP_C57BL6NJ_T0036783.1 MGP_C57BL6NJ_G0020644.1 mouse_genomes_project 13 16750364 16953284 + MGP_C57BL6NJ_P0036783 Amph protein_coding protein_coding MGP_C57BL6NJ_T0036784.1 MGP_C57BL6NJ_G0020644.1 mouse_genomes_project 13 16750391 16899713 + Amph protein_coding retained_intron MGP_C57BL6NJ_T0036785.1 MGP_C57BL6NJ_G0020644.1 mouse_genomes_project 13 16919262 16921169 + Amph protein_coding retained_intron MGP_C57BL6NJ_T0036786.1 MGP_C57BL6NJ_G0020644.1 mouse_genomes_project 13 16920933 16942816 + Amph protein_coding processed_transcript MGP_C57BL6NJ_T0038007.1 MGP_C57BL6NJ_G0021149.1 mouse_genomes_project 13 77091063 77135656 + MGP_C57BL6NJ_P0038007 Slc9a3 protein_coding protein_coding MGP_C57BL6NJ_T0038008.1 MGP_C57BL6NJ_G0021149.1 mouse_genomes_project 13 77091063 77136406 + MGP_C57BL6NJ_P0038008 Slc9a3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0037795.1 MGP_C57BL6NJ_G0021053.1 mouse_genomes_project 13 64860029 64883553 - MGP_C57BL6NJ_P0037795 Fbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037796.1 MGP_C57BL6NJ_G0021053.1 mouse_genomes_project 13 64860042 64868033 - MGP_C57BL6NJ_P0037796 Fbp1 protein_coding protein_coding MGP_C57BL6NJ_T0037797.1 MGP_C57BL6NJ_G0021053.1 mouse_genomes_project 13 64867993 64883398 - MGP_C57BL6NJ_P0037797 Fbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0006792.1 MGP_C57BL6NJ_G0005620.1 mouse_genomes_project 13 103157410 103168666 - 2310005E17Rik lincRNA lincRNA MGP_C57BL6NJ_T0006750.1 MGP_C57BL6NJ_G0005594.1 mouse_genomes_project 13 59553012 59553928 + 1700066J03Rik lincRNA lincRNA MGP_C57BL6NJ_T0101164.1 MGP_C57BL6NJ_G0039210.1 mouse_genomes_project 13 8526787 8526907 - Gm25496 snoRNA snoRNA MGP_C57BL6NJ_T0099892.1 MGP_C57BL6NJ_G0037938.1 mouse_genomes_project 13 100581049 100581149 - Gm23955 snRNA snRNA MGP_C57BL6NJ_T0038544.1 MGP_C57BL6NJ_G0021310.1 mouse_genomes_project 13 113827148 113904461 + MGP_C57BL6NJ_P0038544 Elovl7 protein_coding protein_coding MGP_C57BL6NJ_T0036945.1 MGP_C57BL6NJ_G0020750.1 mouse_genomes_project 13 21985878 21987200 - MGP_C57BL6NJ_P0036945 protein_coding protein_coding MGP_C57BL6NJ_T0037850.1 MGP_C57BL6NJ_G0021068.1 mouse_genomes_project 13 66586165 66604221 - MGP_C57BL6NJ_P0037850 1190003K10Rik protein_coding protein_coding MGP_C57BL6NJ_T0006807.1 MGP_C57BL6NJ_G0005633.1 mouse_genomes_project 13 117794502 117796012 + Gm15324 lincRNA lincRNA MGP_C57BL6NJ_T0006743.1 MGP_C57BL6NJ_G0005588.1 mouse_genomes_project 13 55442964 55443207 - Gm16248 lincRNA lincRNA MGP_C57BL6NJ_T0099868.1 MGP_C57BL6NJ_G0037914.1 mouse_genomes_project 13 18731744 18731868 + Gm25605 snRNA snRNA MGP_C57BL6NJ_T0006682.1 MGP_C57BL6NJ_G0005549.1 mouse_genomes_project 13 22905905 22912555 - C530050E15Rik lincRNA lincRNA MGP_C57BL6NJ_T0010137.1 MGP_C57BL6NJ_G0008222.1 mouse_genomes_project 13 55638993 55639130 + Gm24195 miRNA miRNA MGP_C57BL6NJ_T0037656.1 MGP_C57BL6NJ_G0021004.1 mouse_genomes_project 13 57775015 57780011 + MGP_C57BL6NJ_P0037656 Fbxl21 protein_coding protein_coding MGP_C57BL6NJ_T0037657.1 MGP_C57BL6NJ_G0021004.1 mouse_genomes_project 13 57775034 57790524 + MGP_C57BL6NJ_P0037657 Fbxl21 protein_coding protein_coding MGP_C57BL6NJ_T0037658.1 MGP_C57BL6NJ_G0021004.1 mouse_genomes_project 13 57775051 57790412 + MGP_C57BL6NJ_P0037658 Fbxl21 protein_coding protein_coding MGP_C57BL6NJ_T0037659.1 MGP_C57BL6NJ_G0021004.1 mouse_genomes_project 13 57775056 57782630 + MGP_C57BL6NJ_P0037659 Fbxl21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102591.1 MGP_C57BL6NJ_G0040411.1 mouse_genomes_project 13 117655160 117658016 - unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0038224.1 MGP_C57BL6NJ_G0021203.1 mouse_genomes_project 13 96607160 96642530 - MGP_C57BL6NJ_P0038224 Fam151b protein_coding protein_coding MGP_C57BL6NJ_T0037441.1 MGP_C57BL6NJ_G0020941.1 mouse_genomes_project 13 53464131 53530884 + MGP_C57BL6NJ_P0037441 Syk protein_coding protein_coding MGP_C57BL6NJ_T0037442.1 MGP_C57BL6NJ_G0020941.1 mouse_genomes_project 13 53464395 53525718 + MGP_C57BL6NJ_P0037442 Syk protein_coding protein_coding MGP_C57BL6NJ_T0037443.1 MGP_C57BL6NJ_G0020941.1 mouse_genomes_project 13 53464461 53494427 + Syk protein_coding retained_intron MGP_C57BL6NJ_T0037444.1 MGP_C57BL6NJ_G0020941.1 mouse_genomes_project 13 53477780 53530874 + MGP_C57BL6NJ_P0037444 Syk protein_coding protein_coding MGP_C57BL6NJ_T0037445.1 MGP_C57BL6NJ_G0020941.1 mouse_genomes_project 13 53477886 53505071 + Syk protein_coding retained_intron MGP_C57BL6NJ_T0037598.1 MGP_C57BL6NJ_G0020982.1 mouse_genomes_project 13 56609003 56617892 + MGP_C57BL6NJ_P0037598 Prr7 protein_coding protein_coding MGP_C57BL6NJ_T0017810.1 MGP_C57BL6NJ_G0015642.1 mouse_genomes_project 13 21466512 21538439 + 4930586N03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0036993.1 MGP_C57BL6NJ_G0020763.1 mouse_genomes_project 13 23041640 23053906 - MGP_C57BL6NJ_P0036993 Gmnn protein_coding protein_coding MGP_C57BL6NJ_T0036994.1 MGP_C57BL6NJ_G0020763.1 mouse_genomes_project 13 23041640 23053844 - MGP_C57BL6NJ_P0036994 Gmnn protein_coding protein_coding MGP_C57BL6NJ_T0036995.1 MGP_C57BL6NJ_G0020763.1 mouse_genomes_project 13 23041886 23053459 - MGP_C57BL6NJ_P0036995 Gmnn protein_coding protein_coding MGP_C57BL6NJ_T0036996.1 MGP_C57BL6NJ_G0020763.1 mouse_genomes_project 13 23041983 23053423 - MGP_C57BL6NJ_P0036996 Gmnn protein_coding protein_coding MGP_C57BL6NJ_T0036997.1 MGP_C57BL6NJ_G0020763.1 mouse_genomes_project 13 23043450 23053880 - MGP_C57BL6NJ_P0036997 Gmnn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037713.1 MGP_C57BL6NJ_G0021018.1 mouse_genomes_project 13 59825329 59833883 + MGP_C57BL6NJ_P0037713 Rmi1 protein_coding protein_coding MGP_C57BL6NJ_T0013211.1 MGP_C57BL6NJ_G0011256.1 mouse_genomes_project 13 24014686 24015547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013208.1 MGP_C57BL6NJ_G0011253.1 mouse_genomes_project 13 23435956 23436274 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006677.1 MGP_C57BL6NJ_G0005545.1 mouse_genomes_project 13 21431345 21435583 + 4933404K08Rik lincRNA lincRNA MGP_C57BL6NJ_T0013187.1 MGP_C57BL6NJ_G0011232.1 mouse_genomes_project 13 18575624 18576624 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038072.1 MGP_C57BL6NJ_G0021174.1 mouse_genomes_project 13 84267610 84273868 + Arrdc3 protein_coding retained_intron MGP_C57BL6NJ_T0038073.1 MGP_C57BL6NJ_G0021174.1 mouse_genomes_project 13 84267636 84280379 + MGP_C57BL6NJ_P0038073 Arrdc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038074.1 MGP_C57BL6NJ_G0021174.1 mouse_genomes_project 13 84267876 84280379 + MGP_C57BL6NJ_P0038074 Arrdc3 protein_coding protein_coding MGP_C57BL6NJ_T0038075.1 MGP_C57BL6NJ_G0021174.1 mouse_genomes_project 13 84274328 84275477 + Arrdc3 protein_coding retained_intron MGP_C57BL6NJ_T0038076.1 MGP_C57BL6NJ_G0021174.1 mouse_genomes_project 13 84274742 84275867 + Arrdc3 protein_coding retained_intron MGP_C57BL6NJ_T0036774.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15886942 16146366 - MGP_C57BL6NJ_P0036774 Pou6f2 protein_coding protein_coding MGP_C57BL6NJ_T0036775.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15887042 16275520 - MGP_C57BL6NJ_P0036775 Pou6f2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036776.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15890934 16146366 - MGP_C57BL6NJ_P0036776 Pou6f2 protein_coding protein_coding MGP_C57BL6NJ_T0036777.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15890965 15939655 - MGP_C57BL6NJ_P0036777 Pou6f2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0036778.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15904525 15953500 - Pou6f2 protein_coding processed_transcript MGP_C57BL6NJ_T0036779.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15904525 15939660 - MGP_C57BL6NJ_P0036779 Pou6f2 protein_coding protein_coding MGP_C57BL6NJ_T0036780.1 MGP_C57BL6NJ_G0020642.1 mouse_genomes_project 13 15913831 16146366 - Pou6f2 protein_coding processed_transcript MGP_C57BL6NJ_T0038276.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99397279 99640115 - MGP_C57BL6NJ_P0038276 protein_coding protein_coding MGP_C57BL6NJ_T0038277.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99397284 99407062 - MGP_C57BL6NJ_P0038277 protein_coding protein_coding MGP_C57BL6NJ_T0038278.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99397330 99612744 - MGP_C57BL6NJ_P0038278 protein_coding protein_coding MGP_C57BL6NJ_T0038279.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99398155 99418875 - protein_coding processed_transcript MGP_C57BL6NJ_T0038280.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99398928 99639945 - MGP_C57BL6NJ_P0038280 protein_coding protein_coding MGP_C57BL6NJ_T0038281.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99398945 99612491 - MGP_C57BL6NJ_P0038281 protein_coding protein_coding MGP_C57BL6NJ_T0038282.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99398945 99612491 - MGP_C57BL6NJ_P0038282 protein_coding protein_coding MGP_C57BL6NJ_T0038283.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99398945 99612491 - MGP_C57BL6NJ_P0038283 protein_coding protein_coding MGP_C57BL6NJ_T0038284.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99406754 99613233 - MGP_C57BL6NJ_P0038284 protein_coding protein_coding MGP_C57BL6NJ_T0038285.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99415830 99640053 - MGP_C57BL6NJ_P0038285 protein_coding protein_coding MGP_C57BL6NJ_T0038286.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99462653 99612744 - protein_coding retained_intron MGP_C57BL6NJ_T0038287.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99473503 99640094 - MGP_C57BL6NJ_P0038287 protein_coding protein_coding MGP_C57BL6NJ_T0038288.1 MGP_C57BL6NJ_G0021224.1 mouse_genomes_project 13 99478167 99576516 - protein_coding processed_transcript MGP_C57BL6NJ_T0036834.1 MGP_C57BL6NJ_G0020665.1 mouse_genomes_project 13 19399532 19400995 - MGP_C57BL6NJ_P0036834 Nkapl protein_coding protein_coding MGP_C57BL6NJ_T0036880.1 MGP_C57BL6NJ_G0020696.1 mouse_genomes_project 13 20098517 20101932 + MGP_C57BL6NJ_P0036880 Vmn1r188 protein_coding protein_coding MGP_C57BL6NJ_T0036889.1 MGP_C57BL6NJ_G0020705.1 mouse_genomes_project 13 20414560 20415664 + MGP_C57BL6NJ_P0036889 Vmn1r199 protein_coding protein_coding MGP_C57BL6NJ_T0038426.1 MGP_C57BL6NJ_G0021276.1 mouse_genomes_project 13 105655282 105683608 + MGP_C57BL6NJ_P0038426 Ccdc125 protein_coding protein_coding MGP_C57BL6NJ_T0037276.1 MGP_C57BL6NJ_G0020886.1 mouse_genomes_project 13 43707070 43725094 + MGP_C57BL6NJ_P0037276 Cd83 protein_coding protein_coding MGP_C57BL6NJ_T0001024.1 MGP_C57BL6NJ_G0000933.1 mouse_genomes_project 13 98963195 98963843 + TEC TEC MGP_C57BL6NJ_T0038681.1 MGP_C57BL6NJ_G0021363.1 mouse_genomes_project 13 126335489 126381324 - MGP_C57BL6NJ_P0038681 Nim1k protein_coding protein_coding MGP_C57BL6NJ_T0038682.1 MGP_C57BL6NJ_G0021363.1 mouse_genomes_project 13 126348932 126363858 - MGP_C57BL6NJ_P0038682 Nim1k protein_coding protein_coding MGP_C57BL6NJ_T0036876.1 MGP_C57BL6NJ_G0020692.1 mouse_genomes_project 13 20036395 20037646 + MGP_C57BL6NJ_P0036876 protein_coding protein_coding MGP_C57BL6NJ_T0102826.1 MGP_C57BL6NJ_G0040620.1 mouse_genomes_project 13 32798676 32798835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013264.1 MGP_C57BL6NJ_G0011309.1 mouse_genomes_project 13 97991877 97992217 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038352.1 MGP_C57BL6NJ_G0021250.1 mouse_genomes_project 13 102998276 103025306 + MGP_C57BL6NJ_P0038352 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038353.1 MGP_C57BL6NJ_G0021250.1 mouse_genomes_project 13 102998281 103012034 + MGP_C57BL6NJ_P0038353 protein_coding protein_coding MGP_C57BL6NJ_T0038354.1 MGP_C57BL6NJ_G0021250.1 mouse_genomes_project 13 102998327 103025306 + MGP_C57BL6NJ_P0038354 protein_coding protein_coding MGP_C57BL6NJ_T0038355.1 MGP_C57BL6NJ_G0021250.1 mouse_genomes_project 13 103020671 103025244 + MGP_C57BL6NJ_P0038355 protein_coding protein_coding MGP_C57BL6NJ_T0037418.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52442195 52475354 + MGP_C57BL6NJ_P0037418 Secisbp2 protein_coding protein_coding MGP_C57BL6NJ_T0037419.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52442239 52456610 + MGP_C57BL6NJ_P0037419 Secisbp2 protein_coding protein_coding MGP_C57BL6NJ_T0037420.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52442295 52447528 + Secisbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0037421.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52442295 52455699 + Secisbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0037422.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52471042 52473839 + Secisbp2 protein_coding retained_intron MGP_C57BL6NJ_T0037423.1 MGP_C57BL6NJ_G0020936.1 mouse_genomes_project 13 52473082 52474799 + Secisbp2 protein_coding retained_intron MGP_C57BL6NJ_T0102834.1 MGP_C57BL6NJ_G0040628.1 mouse_genomes_project 13 59830672 59832523 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037790.1 MGP_C57BL6NJ_G0021049.1 mouse_genomes_project 13 64159529 64715239 - MGP_C57BL6NJ_P0037790 protein_coding protein_coding MGP_C57BL6NJ_T0099000.1 MGP_C57BL6NJ_G0037064.1 mouse_genomes_project 13 108635284 108635389 + n-R5s56 rRNA rRNA MGP_C57BL6NJ_T0036816.1 MGP_C57BL6NJ_G0020658.1 mouse_genomes_project 13 19192574 19198934 - MGP_C57BL6NJ_P0036816 Gpx5 protein_coding protein_coding MGP_C57BL6NJ_T0036817.1 MGP_C57BL6NJ_G0020658.1 mouse_genomes_project 13 19192574 19198889 - MGP_C57BL6NJ_P0036817 Gpx5 protein_coding protein_coding MGP_C57BL6NJ_T0101196.1 MGP_C57BL6NJ_G0039242.1 mouse_genomes_project 13 94166788 94166922 + Gm24507 snoRNA snoRNA MGP_C57BL6NJ_T0038370.1 MGP_C57BL6NJ_G0021257.1 mouse_genomes_project 13 103599034 103657211 - MGP_C57BL6NJ_P0038370 Tnpo1 protein_coding protein_coding MGP_C57BL6NJ_T0038371.1 MGP_C57BL6NJ_G0021257.1 mouse_genomes_project 13 103599034 103701365 - MGP_C57BL6NJ_P0038371 Tnpo1 protein_coding protein_coding MGP_C57BL6NJ_T0038372.1 MGP_C57BL6NJ_G0021257.1 mouse_genomes_project 13 103611659 103657169 - MGP_C57BL6NJ_P0038372 Tnpo1 protein_coding protein_coding MGP_C57BL6NJ_T0038373.1 MGP_C57BL6NJ_G0021257.1 mouse_genomes_project 13 103641810 103657185 - MGP_C57BL6NJ_P0038373 Tnpo1 protein_coding protein_coding MGP_C57BL6NJ_T0003659.1 MGP_C57BL6NJ_G0003321.1 mouse_genomes_project 13 112347202 112349199 + Gm28988 antisense antisense MGP_C57BL6NJ_T0037183.1 MGP_C57BL6NJ_G0020845.1 mouse_genomes_project 13 35566740 35919025 + MGP_C57BL6NJ_P0037183 Fars2 protein_coding protein_coding MGP_C57BL6NJ_T0102813.1 MGP_C57BL6NJ_G0040607.1 mouse_genomes_project 13 21080778 21081015 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0036918.1 MGP_C57BL6NJ_G0020731.1 mouse_genomes_project 13 21625821 21659535 - MGP_C57BL6NJ_P0036918 Btn2a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0036920.1 MGP_C57BL6NJ_G0020731.1 mouse_genomes_project 13 21644808 21659566 - MGP_C57BL6NJ_P0036920 Btn2a2 protein_coding protein_coding MGP_C57BL6NJ_T0036921.1 MGP_C57BL6NJ_G0020731.1 mouse_genomes_project 13 21644808 21659583 - MGP_C57BL6NJ_P0036921 Btn2a2 protein_coding protein_coding MGP_C57BL6NJ_T0036922.1 MGP_C57BL6NJ_G0020731.1 mouse_genomes_project 13 21645020 21659573 - MGP_C57BL6NJ_P0036922 Btn2a2 protein_coding protein_coding MGP_C57BL6NJ_T0036885.1 MGP_C57BL6NJ_G0020701.1 mouse_genomes_project 13 20305770 20306721 + MGP_C57BL6NJ_P0036885 Vmn1r195 protein_coding protein_coding MGP_C57BL6NJ_T0010113.1 MGP_C57BL6NJ_G0008198.1 mouse_genomes_project 13 7676674 7676757 - Gm23415 miRNA miRNA MGP_C57BL6NJ_T0036916.1 MGP_C57BL6NJ_G0020729.1 mouse_genomes_project 13 21587627 21589955 - MGP_C57BL6NJ_P0036916 Abt1 protein_coding protein_coding MGP_C57BL6NJ_T0037742.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61083834 61098358 + MGP_C57BL6NJ_P0037742 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037743.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61083870 61133272 + MGP_C57BL6NJ_P0037743 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037744.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61083969 61107379 + MGP_C57BL6NJ_P0037744 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037745.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61084745 61123008 + MGP_C57BL6NJ_P0037745 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037746.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61093926 61098831 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037747.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61096683 61116512 + MGP_C57BL6NJ_P0037747 Naa35 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037748.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61107824 61126124 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037749.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61107949 61123939 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037750.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61107984 61123965 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037751.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61108069 61123080 + MGP_C57BL6NJ_P0037751 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037752.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61116528 61124155 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037753.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61116529 61126446 + MGP_C57BL6NJ_P0037753 Naa35 protein_coding protein_coding MGP_C57BL6NJ_T0037754.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61122934 61127438 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0037755.1 MGP_C57BL6NJ_G0021022.1 mouse_genomes_project 13 61131215 61133130 + Naa35 protein_coding retained_intron MGP_C57BL6NJ_T0036758.1 MGP_C57BL6NJ_G0020631.1 mouse_genomes_project 13 11785641 12126006 - MGP_C57BL6NJ_P0036758 Hecw1 protein_coding protein_coding MGP_C57BL6NJ_T0010110.1 MGP_C57BL6NJ_G0008195.1 mouse_genomes_project 13 2695791 2695888 - Gm26259 miRNA miRNA MGP_C57BL6NJ_T0037893.1 MGP_C57BL6NJ_G0021089.1 mouse_genomes_project 13 69682107 69719086 + MGP_C57BL6NJ_P0037893 Zfp455 protein_coding protein_coding MGP_C57BL6NJ_T0037894.1 MGP_C57BL6NJ_G0021089.1 mouse_genomes_project 13 69682136 69719086 + MGP_C57BL6NJ_P0037894 Zfp455 protein_coding protein_coding MGP_C57BL6NJ_T0037489.1 MGP_C57BL6NJ_G0020955.1 mouse_genomes_project 13 55635895 55642009 + MGP_C57BL6NJ_P0037489 Arl10 protein_coding protein_coding MGP_C57BL6NJ_T0037490.1 MGP_C57BL6NJ_G0020955.1 mouse_genomes_project 13 55635927 55639897 + MGP_C57BL6NJ_P0037490 Arl10 protein_coding protein_coding MGP_C57BL6NJ_T0037491.1 MGP_C57BL6NJ_G0020955.1 mouse_genomes_project 13 55639261 55639790 + Arl10 protein_coding processed_transcript MGP_C57BL6NJ_T0037492.1 MGP_C57BL6NJ_G0020955.1 mouse_genomes_project 13 55639692 55640418 + MGP_C57BL6NJ_P0037492 Arl10 protein_coding protein_coding MGP_C57BL6NJ_T0037296.1 MGP_C57BL6NJ_G0020890.1 mouse_genomes_project 13 45432885 45458608 + MGP_C57BL6NJ_P0037296 Mylip protein_coding protein_coding MGP_C57BL6NJ_T0037466.1 MGP_C57BL6NJ_G0020947.1 mouse_genomes_project 13 54493653 54494010 + MGP_C57BL6NJ_P0037466 Gm5449 protein_coding protein_coding MGP_C57BL6NJ_T0010141.1 MGP_C57BL6NJ_G0008226.1 mouse_genomes_project 13 59413399 59413475 - Mir874 miRNA miRNA MGP_C57BL6NJ_T0006781.1 MGP_C57BL6NJ_G0005613.1 mouse_genomes_project 13 95495291 95514256 - A830009L08Rik lincRNA lincRNA MGP_C57BL6NJ_T0013263.1 MGP_C57BL6NJ_G0011308.1 mouse_genomes_project 13 96455833 96456082 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001016.1 MGP_C57BL6NJ_G0000925.1 mouse_genomes_project 13 73847466 73850645 - TEC TEC MGP_C57BL6NJ_T0003660.1 MGP_C57BL6NJ_G0003322.1 mouse_genomes_project 13 117452441 117472972 - antisense antisense MGP_C57BL6NJ_T0037496.1 MGP_C57BL6NJ_G0020957.1 mouse_genomes_project 13 55651125 55652077 + MGP_C57BL6NJ_P0037496 Higd2a protein_coding protein_coding MGP_C57BL6NJ_T0037962.1 MGP_C57BL6NJ_G0021128.1 mouse_genomes_project 13 73653106 73654662 + MGP_C57BL6NJ_P0037962 8030423J24Rik protein_coding protein_coding MGP_C57BL6NJ_T0102167.1 MGP_C57BL6NJ_G0040190.1 mouse_genomes_project 13 108380281 108384556 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102168.1 MGP_C57BL6NJ_G0040190.1 mouse_genomes_project 13 108380400 108381325 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0037799.1 MGP_C57BL6NJ_G0021055.1 mouse_genomes_project 13 64963863 64965088 - MGP_C57BL6NJ_P0037799 protein_coding protein_coding MGP_C57BL6NJ_T0038062.1 MGP_C57BL6NJ_G0021170.1 mouse_genomes_project 13 80296608 80787768 + MGP_C57BL6NJ_P0038062 2210408I21Rik protein_coding protein_coding MGP_C57BL6NJ_T0037474.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55556988 55608783 + MGP_C57BL6NJ_P0037474 Simc1 protein_coding protein_coding MGP_C57BL6NJ_T0037475.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55556988 55608783 + MGP_C57BL6NJ_P0037475 Simc1 protein_coding protein_coding MGP_C57BL6NJ_T0037476.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55557013 55597121 + MGP_C57BL6NJ_P0037476 Simc1 protein_coding protein_coding MGP_C57BL6NJ_T0037477.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55557018 55597120 + MGP_C57BL6NJ_P0037477 Simc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037478.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55565360 55577463 + Simc1 protein_coding processed_transcript MGP_C57BL6NJ_T0037479.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55582140 55597237 + Simc1 protein_coding retained_intron MGP_C57BL6NJ_T0037480.1 MGP_C57BL6NJ_G0020953.1 mouse_genomes_project 13 55604393 55608279 + Simc1 protein_coding retained_intron MGP_C57BL6NJ_T0038262.1 MGP_C57BL6NJ_G0021218.1 mouse_genomes_project 13 98521216 98608501 - MGP_C57BL6NJ_P0038262 Scamp1 protein_coding protein_coding MGP_C57BL6NJ_T0038263.1 MGP_C57BL6NJ_G0021218.1 mouse_genomes_project 13 98543081 98586051 - MGP_C57BL6NJ_P0038263 Scamp1 protein_coding protein_coding MGP_C57BL6NJ_T0010172.1 MGP_C57BL6NJ_G0008257.1 mouse_genomes_project 13 119065994 119066085 + Mir449a miRNA miRNA MGP_C57BL6NJ_T0010151.1 MGP_C57BL6NJ_G0008236.1 mouse_genomes_project 13 65321554 65321627 + Mir27b miRNA miRNA MGP_C57BL6NJ_T0098817.1 MGP_C57BL6NJ_G0036881.1 mouse_genomes_project 13 401598 408514 + pseudogene pseudogene MGP_C57BL6NJ_T0001033.1 MGP_C57BL6NJ_G0000942.1 mouse_genomes_project 13 120348917 120361907 + TEC TEC MGP_C57BL6NJ_T0038606.1 MGP_C57BL6NJ_G0021325.1 mouse_genomes_project 13 118661054 118742546 + MGP_C57BL6NJ_P0038606 Slc38a9 protein_coding protein_coding MGP_C57BL6NJ_T0037997.1 MGP_C57BL6NJ_G0021143.1 mouse_genomes_project 13 76858371 76889916 - MGP_C57BL6NJ_P0037997 Trip13 protein_coding protein_coding MGP_C57BL6NJ_T0037998.1 MGP_C57BL6NJ_G0021143.1 mouse_genomes_project 13 76860268 76889730 - MGP_C57BL6NJ_P0037998 Trip13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010130.1 MGP_C57BL6NJ_G0008215.1 mouse_genomes_project 13 48874637 48874740 - Mirlet7d miRNA miRNA MGP_C57BL6NJ_T0017814.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27164530 27219604 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017815.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27165274 27617513 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017816.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27165274 27178804 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017817.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27165437 27215285 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017818.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27203514 27215444 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017819.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27264459 27614667 - processed_transcript processed_transcript MGP_C57BL6NJ_T0017820.1 MGP_C57BL6NJ_G0015646.1 mouse_genomes_project 13 27376737 27616555 - processed_transcript processed_transcript MGP_C57BL6NJ_T0038480.1 MGP_C57BL6NJ_G0021288.1 mouse_genomes_project 13 109395087 109416899 + MGP_C57BL6NJ_P0038480 Sgtb protein_coding protein_coding MGP_C57BL6NJ_T0038481.1 MGP_C57BL6NJ_G0021288.1 mouse_genomes_project 13 109395137 109427139 + MGP_C57BL6NJ_P0038481 Sgtb protein_coding protein_coding MGP_C57BL6NJ_T0013175.1 MGP_C57BL6NJ_G0011220.1 mouse_genomes_project 13 813081 813372 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0036850.1 MGP_C57BL6NJ_G0020676.1 mouse_genomes_project 13 19622307 19623256 - MGP_C57BL6NJ_P0036850 protein_coding protein_coding MGP_C57BL6NJ_T0036847.1 MGP_C57BL6NJ_G0020674.1 mouse_genomes_project 13 19582313 19585996 - MGP_C57BL6NJ_P0036847 Olfr11 protein_coding protein_coding MGP_C57BL6NJ_T0036848.1 MGP_C57BL6NJ_G0020674.1 mouse_genomes_project 13 19582313 19583255 - MGP_C57BL6NJ_P0036848 Olfr11 protein_coding protein_coding MGP_C57BL6NJ_T0038679.1 MGP_C57BL6NJ_G0021361.1 mouse_genomes_project 13 126264044 126294191 + MGP_C57BL6NJ_P0038679 Ccl28 protein_coding protein_coding MGP_C57BL6NJ_T0101174.1 MGP_C57BL6NJ_G0039220.1 mouse_genomes_project 13 36043433 36043565 + Gm26395 snoRNA snoRNA MGP_C57BL6NJ_T0038344.1 MGP_C57BL6NJ_G0021246.1 mouse_genomes_project 13 101822365 101834386 + MGP_C57BL6NJ_P0038344 Enc1 protein_coding protein_coding MGP_C57BL6NJ_T0013199.1 MGP_C57BL6NJ_G0011244.1 mouse_genomes_project 13 20837665 20838097 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037066.1 MGP_C57BL6NJ_G0020797.1 mouse_genomes_project 13 28690836 28771880 - MGP_C57BL6NJ_P0037066 E2f3 protein_coding protein_coding MGP_C57BL6NJ_T0037067.1 MGP_C57BL6NJ_G0020797.1 mouse_genomes_project 13 28703035 28770431 - MGP_C57BL6NJ_P0037067 E2f3 protein_coding protein_coding MGP_C57BL6NJ_T0038066.1 MGP_C57BL6NJ_G0021172.1 mouse_genomes_project 13 81232571 81233965 + MGP_C57BL6NJ_P0038066 Pou5f2 protein_coding protein_coding MGP_C57BL6NJ_T0036800.1 MGP_C57BL6NJ_G0020649.1 mouse_genomes_project 13 17558991 17564526 - MGP_C57BL6NJ_P0036800 A530099J19Rik protein_coding protein_coding MGP_C57BL6NJ_T0038574.1 MGP_C57BL6NJ_G0021316.1 mouse_genomes_project 13 117093239 117095976 + MGP_C57BL6NJ_P0038574 Actbl2 protein_coding protein_coding MGP_C57BL6NJ_T0006684.1 MGP_C57BL6NJ_G0005551.1 mouse_genomes_project 13 24671430 24702803 - 1700092E19Rik lincRNA lincRNA MGP_C57BL6NJ_T0006685.1 MGP_C57BL6NJ_G0005551.1 mouse_genomes_project 13 24696214 24702744 - 1700092E19Rik lincRNA lincRNA MGP_C57BL6NJ_T0037156.1 MGP_C57BL6NJ_G0020837.1 mouse_genomes_project 13 34174537 34184566 - MGP_C57BL6NJ_P0037156 Fam217a protein_coding protein_coding MGP_C57BL6NJ_T0037923.1 MGP_C57BL6NJ_G0021107.1 mouse_genomes_project 13 70243877 70260148 - MGP_C57BL6NJ_P0037923 Zfp729b protein_coding protein_coding MGP_C57BL6NJ_T0099889.1 MGP_C57BL6NJ_G0037935.1 mouse_genomes_project 13 93974206 93974308 - Gm24498 snRNA snRNA MGP_C57BL6NJ_T0036961.1 MGP_C57BL6NJ_G0020758.1 mouse_genomes_project 13 22167980 22168370 + MGP_C57BL6NJ_P0036961 Hist1h2aa protein_coding protein_coding MGP_C57BL6NJ_T0037221.1 MGP_C57BL6NJ_G0020863.1 mouse_genomes_project 13 40577736 40684021 + MGP_C57BL6NJ_P0037221 Gcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0037222.1 MGP_C57BL6NJ_G0020863.1 mouse_genomes_project 13 40605119 40684021 + MGP_C57BL6NJ_P0037222 Gcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0037223.1 MGP_C57BL6NJ_G0020863.1 mouse_genomes_project 13 40640186 40684021 + MGP_C57BL6NJ_P0037223 Gcnt2 protein_coding protein_coding MGP_C57BL6NJ_T0037269.1 MGP_C57BL6NJ_G0020880.1 mouse_genomes_project 13 43077657 43183753 - MGP_C57BL6NJ_P0037269 Gfod1 protein_coding protein_coding MGP_C57BL6NJ_T0036886.1 MGP_C57BL6NJ_G0020702.1 mouse_genomes_project 13 20320580 20321486 + MGP_C57BL6NJ_P0036886 Vmn1r196 protein_coding protein_coding MGP_C57BL6NJ_T0037077.1 MGP_C57BL6NJ_G0020802.1 mouse_genomes_project 13 29615201 29632879 + MGP_C57BL6NJ_P0037077 Irf4 protein_coding protein_coding MGP_C57BL6NJ_T0037078.1 MGP_C57BL6NJ_G0020802.1 mouse_genomes_project 13 29615201 29632879 + MGP_C57BL6NJ_P0037078 Irf4 protein_coding protein_coding MGP_C57BL6NJ_T0001021.1 MGP_C57BL6NJ_G0000930.1 mouse_genomes_project 13 94321628 94323824 + TEC TEC MGP_C57BL6NJ_T0037794.1 MGP_C57BL6NJ_G0021052.1 mouse_genomes_project 13 64828760 64850231 - MGP_C57BL6NJ_P0037794 Fbp2 protein_coding protein_coding MGP_C57BL6NJ_T0013233.1 MGP_C57BL6NJ_G0011278.1 mouse_genomes_project 13 45222974 45223977 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0037397.1 MGP_C57BL6NJ_G0020927.1 mouse_genomes_project 13 50457290 50457530 - MGP_C57BL6NJ_P0037397 protein_coding protein_coding MGP_C57BL6NJ_T0036608.1 MGP_C57BL6NJ_G0020588.1 mouse_genomes_project 13 611555 643280 + MGP_C57BL6NJ_P0036608 Akr1c14 protein_coding protein_coding MGP_C57BL6NJ_T0036609.1 MGP_C57BL6NJ_G0020588.1 mouse_genomes_project 13 622180 643271 + MGP_C57BL6NJ_P0036609 Akr1c14 protein_coding protein_coding MGP_C57BL6NJ_T0036610.1 MGP_C57BL6NJ_G0020588.1 mouse_genomes_project 13 631107 641854 + Akr1c14 protein_coding processed_transcript MGP_C57BL6NJ_T0037277.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44728111 44730226 + Jarid2 protein_coding processed_transcript MGP_C57BL6NJ_T0037278.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44728172 44863784 + MGP_C57BL6NJ_P0037278 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037279.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44728432 44835201 + MGP_C57BL6NJ_P0037279 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037280.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729411 44938703 + MGP_C57BL6NJ_P0037280 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037281.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729460 44939590 + MGP_C57BL6NJ_P0037281 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037282.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729475 44921817 + MGP_C57BL6NJ_P0037282 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037283.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729496 44890829 + Jarid2 protein_coding processed_transcript MGP_C57BL6NJ_T0037284.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729922 44940238 + MGP_C57BL6NJ_P0037284 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037285.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44729938 44835094 + MGP_C57BL6NJ_P0037285 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037286.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44730019 44902288 + Jarid2 protein_coding retained_intron MGP_C57BL6NJ_T0037287.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44730021 44940235 + Jarid2 protein_coding retained_intron MGP_C57BL6NJ_T0037288.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44730249 44902008 + MGP_C57BL6NJ_P0037288 Jarid2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0037289.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44730510 44890820 + Jarid2 protein_coding processed_transcript MGP_C57BL6NJ_T0037290.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44735551 44890792 + Jarid2 protein_coding processed_transcript MGP_C57BL6NJ_T0037291.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44854648 44932914 + MGP_C57BL6NJ_P0037291 Jarid2 protein_coding protein_coding MGP_C57BL6NJ_T0037292.1 MGP_C57BL6NJ_G0020887.1 mouse_genomes_project 13 44854740 44915040 + MGP_C57BL6NJ_P0037292 Jarid2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038651.1 MGP_C57BL6NJ_G0021348.1 mouse_genomes_project 13 123183336 123368582 - MGP_C57BL6NJ_P0038651 Parp8 protein_coding protein_coding MGP_C57BL6NJ_T0038613.1 MGP_C57BL6NJ_G0021331.1 mouse_genomes_project 13 119063583 119066785 + MGP_C57BL6NJ_P0038613 Cdc20b protein_coding protein_coding MGP_C57BL6NJ_T0038614.1 MGP_C57BL6NJ_G0021331.1 mouse_genomes_project 13 119063851 119137130 + MGP_C57BL6NJ_P0038614 Cdc20b protein_coding protein_coding MGP_C57BL6NJ_T0038615.1 MGP_C57BL6NJ_G0021331.1 mouse_genomes_project 13 119063851 119137130 + MGP_C57BL6NJ_P0038615 Cdc20b protein_coding protein_coding MGP_C57BL6NJ_T0038616.1 MGP_C57BL6NJ_G0021331.1 mouse_genomes_project 13 119063851 119137130 + MGP_C57BL6NJ_P0038616 Cdc20b protein_coding protein_coding MGP_C57BL6NJ_T0038617.1 MGP_C57BL6NJ_G0021331.1 mouse_genomes_project 13 119063859 119066785 + MGP_C57BL6NJ_P0038617 Cdc20b protein_coding protein_coding MGP_C57BL6NJ_T0038290.1 MGP_C57BL6NJ_G0021226.1 mouse_genomes_project 13 99752730 99777400 - MGP_C57BL6NJ_P0038290 Aggf1 protein_coding protein_coding MGP_C57BL6NJ_T0038291.1 MGP_C57BL6NJ_G0021226.1 mouse_genomes_project 13 99755549 99777382 - Aggf1 protein_coding processed_transcript MGP_C57BL6NJ_T0037955.1 MGP_C57BL6NJ_G0021124.1 mouse_genomes_project 13 72383556 72423104 - MGP_C57BL6NJ_P0037955 Ube2ql1 protein_coding protein_coding MGP_C57BL6NJ_T0038534.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766383 113806972 + MGP_C57BL6NJ_P0038534 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038535.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766390 113771317 + Ercc8 protein_coding retained_intron MGP_C57BL6NJ_T0038536.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766390 113806593 + MGP_C57BL6NJ_P0038536 Ercc8 protein_coding protein_coding MGP_C57BL6NJ_T0038537.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766390 113783089 + MGP_C57BL6NJ_P0038537 Ercc8 protein_coding protein_coding MGP_C57BL6NJ_T0038538.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766390 113785731 + MGP_C57BL6NJ_P0038538 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038539.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766406 113806593 + MGP_C57BL6NJ_P0038539 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038540.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766423 113806585 + MGP_C57BL6NJ_P0038540 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038541.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766427 113781595 + MGP_C57BL6NJ_P0038541 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038542.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766455 113792394 + MGP_C57BL6NJ_P0038542 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0038543.1 MGP_C57BL6NJ_G0021309.1 mouse_genomes_project 13 113766456 113787147 + MGP_C57BL6NJ_P0038543 Ercc8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101167.1 MGP_C57BL6NJ_G0039213.1 mouse_genomes_project 13 16733126 16733260 + Gm26172 snoRNA snoRNA MGP_C57BL6NJ_T0037084.1 MGP_C57BL6NJ_G0020807.1 mouse_genomes_project 13 30470726 30473379 + MGP_C57BL6NJ_P0037084 Foxq1 protein_coding protein_coding MGP_C57BL6NJ_T0013268.1 MGP_C57BL6NJ_G0011313.1 mouse_genomes_project 13 108380395 108381327 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101166.1 MGP_C57BL6NJ_G0039212.1 mouse_genomes_project 13 10746463 10746651 + Gm25804 snoRNA snoRNA MGP_C57BL6NJ_T0013185.1 MGP_C57BL6NJ_G0011230.1 mouse_genomes_project 13 14806622 14807580 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038611.1 MGP_C57BL6NJ_G0021329.1 mouse_genomes_project 13 119004752 119007729 + MGP_C57BL6NJ_P0038611 Ccno protein_coding protein_coding MGP_C57BL6NJ_T0099866.1 MGP_C57BL6NJ_G0037912.1 mouse_genomes_project 13 14969662 14969769 + Gm25020 snRNA snRNA MGP_C57BL6NJ_T0037652.1 MGP_C57BL6NJ_G0021000.1 mouse_genomes_project 13 57525210 57533115 - MGP_C57BL6NJ_P0037652 Cxcl14 protein_coding protein_coding MGP_C57BL6NJ_T0006693.1 MGP_C57BL6NJ_G0005556.1 mouse_genomes_project 13 29478707 29487877 + 4930519D14Rik lincRNA lincRNA MGP_C57BL6NJ_T0037201.1 MGP_C57BL6NJ_G0020851.1 mouse_genomes_project 13 37501719 37534378 - MGP_C57BL6NJ_P0037201 Cage1 protein_coding protein_coding MGP_C57BL6NJ_T0037202.1 MGP_C57BL6NJ_G0020851.1 mouse_genomes_project 13 37520040 37534376 - MGP_C57BL6NJ_P0037202 Cage1 protein_coding protein_coding MGP_C57BL6NJ_T0102789.1 MGP_C57BL6NJ_G0040583.1 mouse_genomes_project 13 20060640 20061157 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037138.1 MGP_C57BL6NJ_G0020829.1 mouse_genomes_project 13 33175919 33211568 + MGP_C57BL6NJ_P0037138 Ripk1 protein_coding protein_coding MGP_C57BL6NJ_T0037139.1 MGP_C57BL6NJ_G0020829.1 mouse_genomes_project 13 33175956 33188243 + Ripk1 protein_coding retained_intron MGP_C57BL6NJ_T0037140.1 MGP_C57BL6NJ_G0020829.1 mouse_genomes_project 13 33176430 33213061 + MGP_C57BL6NJ_P0037140 Ripk1 protein_coding protein_coding MGP_C57BL6NJ_T0037141.1 MGP_C57BL6NJ_G0020829.1 mouse_genomes_project 13 33183254 33210673 + MGP_C57BL6NJ_P0037141 Ripk1 protein_coding protein_coding MGP_C57BL6NJ_T0006713.1 MGP_C57BL6NJ_G0005569.1 mouse_genomes_project 13 36898806 36900560 - Gm29459 lincRNA lincRNA MGP_C57BL6NJ_T0101177.1 MGP_C57BL6NJ_G0039223.1 mouse_genomes_project 13 47164918 47165047 + Gm24769 snoRNA snoRNA MGP_C57BL6NJ_T0003648.1 MGP_C57BL6NJ_G0003315.1 mouse_genomes_project 13 103035697 103036580 + Gm9828 antisense antisense MGP_C57BL6NJ_T0003649.1 MGP_C57BL6NJ_G0003315.1 mouse_genomes_project 13 103036344 103041260 + Gm9828 antisense antisense MGP_C57BL6NJ_T0003650.1 MGP_C57BL6NJ_G0003315.1 mouse_genomes_project 13 103036391 103043688 + Gm9828 antisense antisense MGP_C57BL6NJ_T0003651.1 MGP_C57BL6NJ_G0003315.1 mouse_genomes_project 13 103037930 103040766 + Gm9828 antisense antisense MGP_C57BL6NJ_T0017824.1 MGP_C57BL6NJ_G0015649.1 mouse_genomes_project 13 40679543 40730387 - A730081D07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0037085.1 MGP_C57BL6NJ_G0020808.1 mouse_genomes_project 13 30558743 30564333 + MGP_C57BL6NJ_P0037085 Foxf2 protein_coding protein_coding MGP_C57BL6NJ_T0010149.1 MGP_C57BL6NJ_G0008234.1 mouse_genomes_project 13 64768549 64768632 + Gm24588 miRNA miRNA MGP_C57BL6NJ_T0036676.1 MGP_C57BL6NJ_G0020607.1 mouse_genomes_project 13 5922972 5926478 + MGP_C57BL6NJ_P0036676 protein_coding protein_coding MGP_C57BL6NJ_T0037013.1 MGP_C57BL6NJ_G0020771.1 mouse_genomes_project 13 23357840 23426952 + MGP_C57BL6NJ_P0037013 Dcdc2a protein_coding protein_coding MGP_C57BL6NJ_T0037014.1 MGP_C57BL6NJ_G0020771.1 mouse_genomes_project 13 23358089 23516744 + MGP_C57BL6NJ_P0037014 Dcdc2a protein_coding protein_coding MGP_C57BL6NJ_T0037015.1 MGP_C57BL6NJ_G0020771.1 mouse_genomes_project 13 23401671 23424835 + Dcdc2a protein_coding processed_transcript MGP_C57BL6NJ_T0037016.1 MGP_C57BL6NJ_G0020771.1 mouse_genomes_project 13 23493483 23511327 + Dcdc2a protein_coding processed_transcript MGP_C57BL6NJ_T0038128.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88840066 88865645 + MGP_C57BL6NJ_P0038128 Ccnh protein_coding protein_coding MGP_C57BL6NJ_T0038129.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88840093 88854528 + MGP_C57BL6NJ_P0038129 Ccnh protein_coding protein_coding MGP_C57BL6NJ_T0038130.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88840106 88864533 + MGP_C57BL6NJ_P0038130 Ccnh protein_coding protein_coding MGP_C57BL6NJ_T0038131.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88840135 88864832 + MGP_C57BL6NJ_P0038131 Ccnh protein_coding protein_coding MGP_C57BL6NJ_T0038132.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88854515 88875391 + MGP_C57BL6NJ_P0038132 Ccnh protein_coding protein_coding MGP_C57BL6NJ_T0038133.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88863243 88865031 + Ccnh protein_coding processed_transcript MGP_C57BL6NJ_T0038134.1 MGP_C57BL6NJ_G0021182.1 mouse_genomes_project 13 88863705 88864827 + Ccnh protein_coding retained_intron MGP_C57BL6NJ_T0013218.1 MGP_C57BL6NJ_G0011263.1 mouse_genomes_project 13 27562796 27564770 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101201.1 MGP_C57BL6NJ_G0039247.1 mouse_genomes_project 13 110595230 110595360 - Gm25631 snoRNA snoRNA MGP_C57BL6NJ_T0038571.1 MGP_C57BL6NJ_G0021313.1 mouse_genomes_project 13 115823296 116063851 - MGP_C57BL6NJ_P0038571 Rab3c protein_coding protein_coding MGP_C57BL6NJ_T0037414.1 MGP_C57BL6NJ_G0020932.1 mouse_genomes_project 13 51916321 51920484 + MGP_C57BL6NJ_P0037414 Nxnl2 protein_coding protein_coding MGP_C57BL6NJ_T0037134.1 MGP_C57BL6NJ_G0020828.1 mouse_genomes_project 13 33132276 33160145 + MGP_C57BL6NJ_P0037134 Nqo2 protein_coding protein_coding MGP_C57BL6NJ_T0037135.1 MGP_C57BL6NJ_G0020828.1 mouse_genomes_project 13 33132276 33160145 + MGP_C57BL6NJ_P0037135 Nqo2 protein_coding protein_coding MGP_C57BL6NJ_T0102835.1 MGP_C57BL6NJ_G0040629.1 mouse_genomes_project 13 111625507 111626063 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010156.1 MGP_C57BL6NJ_G0008241.1 mouse_genomes_project 13 79444913 79444995 - Gm24025 miRNA miRNA MGP_C57BL6NJ_T0102820.1 MGP_C57BL6NJ_G0040614.1 mouse_genomes_project 13 25827176 25830222 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0037782.1 MGP_C57BL6NJ_G0021042.1 mouse_genomes_project 13 62620805 62628248 - MGP_C57BL6NJ_P0037782 Ctsq protein_coding protein_coding MGP_C57BL6NJ_T0037783.1 MGP_C57BL6NJ_G0021042.1 mouse_genomes_project 13 62620815 62623896 - Ctsq protein_coding retained_intron MGP_C57BL6NJ_T0036611.1 MGP_C57BL6NJ_G0020589.1 mouse_genomes_project 13 687466 705398 - MGP_C57BL6NJ_P0036611 Akr1c18 protein_coding protein_coding MGP_C57BL6NJ_T0036612.1 MGP_C57BL6NJ_G0020589.1 mouse_genomes_project 13 687466 705424 - MGP_C57BL6NJ_P0036612 Akr1c18 protein_coding protein_coding MGP_C57BL6NJ_T0010163.1 MGP_C57BL6NJ_G0008248.1 mouse_genomes_project 13 98216523 98216648 - Gm25534 miRNA miRNA MGP_C57BL6NJ_T0038148.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773147 93189812 + MGP_C57BL6NJ_P0038148 Edil3 protein_coding protein_coding MGP_C57BL6NJ_T0038149.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773163 93125265 + Edil3 protein_coding processed_transcript MGP_C57BL6NJ_T0038150.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773186 93328766 + MGP_C57BL6NJ_P0038150 Edil3 protein_coding protein_coding MGP_C57BL6NJ_T0038151.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773232 92950324 + Edil3 protein_coding retained_intron MGP_C57BL6NJ_T0038152.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773235 92785951 + Edil3 protein_coding processed_transcript MGP_C57BL6NJ_T0038153.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773289 93021244 + Edil3 protein_coding retained_intron MGP_C57BL6NJ_T0038154.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773293 93082095 + Edil3 protein_coding retained_intron MGP_C57BL6NJ_T0038155.1 MGP_C57BL6NJ_G0021185.1 mouse_genomes_project 13 92773317 93328766 + MGP_C57BL6NJ_P0038155 Edil3 protein_coding protein_coding MGP_C57BL6NJ_T0037023.1 MGP_C57BL6NJ_G0020775.1 mouse_genomes_project 13 25558745 25567508 + MGP_C57BL6NJ_P0037023 protein_coding protein_coding MGP_C57BL6NJ_T0036958.1 MGP_C57BL6NJ_G0020756.1 mouse_genomes_project 13 22127886 22144996 - MGP_C57BL6NJ_P0036958 Slc17a4 protein_coding protein_coding MGP_C57BL6NJ_T0036959.1 MGP_C57BL6NJ_G0020756.1 mouse_genomes_project 13 22128037 22144998 - MGP_C57BL6NJ_P0036959 Slc17a4 protein_coding protein_coding MGP_C57BL6NJ_T0013255.1 MGP_C57BL6NJ_G0011300.1 mouse_genomes_project 13 81616382 81622524 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010120.1 MGP_C57BL6NJ_G0008205.1 mouse_genomes_project 13 21690658 21690767 + n-TStga1 miRNA miRNA MGP_C57BL6NJ_T0013178.1 MGP_C57BL6NJ_G0011223.1 mouse_genomes_project 13 2119318 2119538 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003597.1 MGP_C57BL6NJ_G0003287.1 mouse_genomes_project 13 33092299 33103587 + 1110046J04Rik antisense antisense MGP_C57BL6NJ_T0003598.1 MGP_C57BL6NJ_G0003287.1 mouse_genomes_project 13 33101276 33127982 + 1110046J04Rik antisense antisense MGP_C57BL6NJ_T0038505.1 MGP_C57BL6NJ_G0021296.1 mouse_genomes_project 13 110180706 110201988 - MGP_C57BL6NJ_P0038505 Fam159b protein_coding protein_coding MGP_C57BL6NJ_T0037173.1 MGP_C57BL6NJ_G0020841.1 mouse_genomes_project 13 34980716 35212302 + MGP_C57BL6NJ_P0037173 Cdyl protein_coding protein_coding MGP_C57BL6NJ_T0037174.1 MGP_C57BL6NJ_G0020841.1 mouse_genomes_project 13 35073780 35212296 + MGP_C57BL6NJ_P0037174 Cdyl protein_coding protein_coding MGP_C57BL6NJ_T0037175.1 MGP_C57BL6NJ_G0020841.1 mouse_genomes_project 13 35074332 35210908 + MGP_C57BL6NJ_P0037175 Cdyl protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003626.1 MGP_C57BL6NJ_G0003305.1 mouse_genomes_project 13 76640985 76651068 + Slc6a19os antisense antisense MGP_C57BL6NJ_T0003627.1 MGP_C57BL6NJ_G0003305.1 mouse_genomes_project 13 76644875 76650129 + Slc6a19os antisense antisense MGP_C57BL6NJ_T0037304.1 MGP_C57BL6NJ_G0020894.1 mouse_genomes_project 13 46422496 46449437 + MGP_C57BL6NJ_P0037304 Stmnd1 protein_coding protein_coding MGP_C57BL6NJ_T0001022.1 MGP_C57BL6NJ_G0000931.1 mouse_genomes_project 13 94472097 94472992 - TEC TEC MGP_C57BL6NJ_T0036877.1 MGP_C57BL6NJ_G0020693.1 mouse_genomes_project 13 20041936 20043288 - MGP_C57BL6NJ_P0036877 Hist1h4i protein_coding protein_coding MGP_C57BL6NJ_T0038674.1 MGP_C57BL6NJ_G0021358.1 mouse_genomes_project 13 126086193 126087316 - MGP_C57BL6NJ_P0038674 3110070M22Rik protein_coding protein_coding MGP_C57BL6NJ_T0037910.1 MGP_C57BL6NJ_G0021101.1 mouse_genomes_project 13 70038807 70055931 - MGP_C57BL6NJ_P0037910 protein_coding protein_coding MGP_C57BL6NJ_T0010168.1 MGP_C57BL6NJ_G0008253.1 mouse_genomes_project 13 115053691 115053772 + Mir582 miRNA miRNA MGP_C57BL6NJ_T0102821.1 MGP_C57BL6NJ_G0040615.1 mouse_genomes_project 13 26208841 26218003 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006696.1 MGP_C57BL6NJ_G0005559.1 mouse_genomes_project 13 30230053 30231229 - Gm11373 lincRNA lincRNA MGP_C57BL6NJ_T0037045.1 MGP_C57BL6NJ_G0020788.1 mouse_genomes_project 13 26116252 26125676 - MGP_C57BL6NJ_P0037045 Prl7b1 protein_coding protein_coding MGP_C57BL6NJ_T0006784.1 MGP_C57BL6NJ_G0005616.1 mouse_genomes_project 13 100611761 100612728 + Gm29543 lincRNA lincRNA MGP_C57BL6NJ_T0101173.1 MGP_C57BL6NJ_G0039219.1 mouse_genomes_project 13 34597548 34597679 - Gm22674 snoRNA snoRNA MGP_C57BL6NJ_T0037789.1 MGP_C57BL6NJ_G0021048.1 mouse_genomes_project 13 63229051 63234548 - MGP_C57BL6NJ_P0037789 Cts3 protein_coding protein_coding MGP_C57BL6NJ_T0037459.1 MGP_C57BL6NJ_G0020943.1 mouse_genomes_project 13 53891019 53904878 - MGP_C57BL6NJ_P0037459 Nfil3 protein_coding protein_coding MGP_C57BL6NJ_T0003657.1 MGP_C57BL6NJ_G0003319.1 mouse_genomes_project 13 110011638 110028224 + antisense antisense MGP_C57BL6NJ_T0037800.1 MGP_C57BL6NJ_G0021056.1 mouse_genomes_project 13 65011364 65320499 + MGP_C57BL6NJ_P0037800 2010111I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0037801.1 MGP_C57BL6NJ_G0021056.1 mouse_genomes_project 13 65011597 65323127 + MGP_C57BL6NJ_P0037801 2010111I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0037802.1 MGP_C57BL6NJ_G0021056.1 mouse_genomes_project 13 65302574 65348338 + MGP_C57BL6NJ_P0037802 2010111I01Rik protein_coding protein_coding MGP_C57BL6NJ_T0011612.1 MGP_C57BL6NJ_G0009697.1 mouse_genomes_project 13 45334529 45334872 - Gm23755 misc_RNA misc_RNA MGP_C57BL6NJ_T0006799.1 MGP_C57BL6NJ_G0005626.1 mouse_genomes_project 13 105874291 106019565 + Gm29502 lincRNA lincRNA MGP_C57BL6NJ_T0038620.1 MGP_C57BL6NJ_G0021334.1 mouse_genomes_project 13 119139747 119146900 - MGP_C57BL6NJ_P0038620 Gzma protein_coding protein_coding MGP_C57BL6NJ_T0013194.1 MGP_C57BL6NJ_G0011239.1 mouse_genomes_project 13 19953290 19954706 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013247.1 MGP_C57BL6NJ_G0011292.1 mouse_genomes_project 13 72705666 72706077 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0038221.1 MGP_C57BL6NJ_G0021202.1 mouse_genomes_project 13 96579087 96594842 + MGP_C57BL6NJ_P0038221 Ankrd34b protein_coding protein_coding MGP_C57BL6NJ_T0038222.1 MGP_C57BL6NJ_G0021202.1 mouse_genomes_project 13 96579532 96591537 + MGP_C57BL6NJ_P0038222 Ankrd34b protein_coding protein_coding MGP_C57BL6NJ_T0038223.1 MGP_C57BL6NJ_G0021202.1 mouse_genomes_project 13 96579849 96594114 + MGP_C57BL6NJ_P0038223 Ankrd34b protein_coding protein_coding MGP_C57BL6NJ_T0037635.1 MGP_C57BL6NJ_G0020993.1 mouse_genomes_project 13 56874986 56886525 + MGP_C57BL6NJ_P0037635 Txndc15 protein_coding protein_coding MGP_C57BL6NJ_T0099863.1 MGP_C57BL6NJ_G0037909.1 mouse_genomes_project 13 11633528 11633635 + Gm26129 snRNA snRNA MGP_C57BL6NJ_T0036601.1 MGP_C57BL6NJ_G0020583.1 mouse_genomes_project 13 382027 382883 + MGP_C57BL6NJ_P0036601 Calm4 protein_coding protein_coding MGP_C57BL6NJ_T0037412.1 MGP_C57BL6NJ_G0020930.1 mouse_genomes_project 13 51280817 51283286 - MGP_C57BL6NJ_P0037412 Gm904 protein_coding protein_coding MGP_C57BL6NJ_T0038506.1 MGP_C57BL6NJ_G0021297.1 mouse_genomes_project 13 110295468 110407546 - MGP_C57BL6NJ_P0038506 Rgs7bp protein_coding protein_coding MGP_C57BL6NJ_T0041639.1 MGP_C57BL6NJ_G0022341.1 mouse_genomes_project 15 77342441 77346371 - MGP_C57BL6NJ_P0041639 Slurp2 protein_coding protein_coding MGP_C57BL6NJ_T0041959.1 MGP_C57BL6NJ_G0022420.1 mouse_genomes_project 15 79824316 79846231 - MGP_C57BL6NJ_P0041959 Zfp251 protein_coding protein_coding MGP_C57BL6NJ_T0041373.1 MGP_C57BL6NJ_G0022255.1 mouse_genomes_project 15 55884514 55892764 + MGP_C57BL6NJ_P0041373 Nov protein_coding protein_coding MGP_C57BL6NJ_T0041989.1 MGP_C57BL6NJ_G0022436.1 mouse_genomes_project 15 80850697 80873236 + protein_coding retained_intron MGP_C57BL6NJ_T0041991.1 MGP_C57BL6NJ_G0022436.1 mouse_genomes_project 15 80850745 80882254 + MGP_C57BL6NJ_P0041991 protein_coding protein_coding MGP_C57BL6NJ_T0041173.1 MGP_C57BL6NJ_G0022180.1 mouse_genomes_project 15 33202331 33206330 - MGP_C57BL6NJ_P0041173 Tspyl5 protein_coding protein_coding MGP_C57BL6NJ_T0042128.1 MGP_C57BL6NJ_G0022480.1 mouse_genomes_project 15 82636499 82681915 - MGP_C57BL6NJ_P0042128 Baiap2l2 protein_coding protein_coding MGP_C57BL6NJ_T0042129.1 MGP_C57BL6NJ_G0022480.1 mouse_genomes_project 15 82636500 82681820 - MGP_C57BL6NJ_P0042129 Baiap2l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042130.1 MGP_C57BL6NJ_G0022480.1 mouse_genomes_project 15 82636635 82637656 - Baiap2l2 protein_coding processed_transcript MGP_C57BL6NJ_T0042131.1 MGP_C57BL6NJ_G0022480.1 mouse_genomes_project 15 82638020 82639602 - Baiap2l2 protein_coding processed_transcript MGP_C57BL6NJ_T0042132.1 MGP_C57BL6NJ_G0022480.1 mouse_genomes_project 15 82648463 82681871 - MGP_C57BL6NJ_P0042132 Baiap2l2 protein_coding protein_coding MGP_C57BL6NJ_T0041142.1 MGP_C57BL6NJ_G0022165.1 mouse_genomes_project 15 26856507 27154894 - MGP_C57BL6NJ_P0041142 Trio protein_coding protein_coding MGP_C57BL6NJ_T0041607.1 MGP_C57BL6NJ_G0022331.1 mouse_genomes_project 15 76311874 76389171 - MGP_C57BL6NJ_P0041607 Mroh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041608.1 MGP_C57BL6NJ_G0022331.1 mouse_genomes_project 15 76331423 76334107 - Mroh5 protein_coding processed_transcript MGP_C57BL6NJ_T0041609.1 MGP_C57BL6NJ_G0022331.1 mouse_genomes_project 15 76338491 76397848 - MGP_C57BL6NJ_P0041609 Mroh5 protein_coding protein_coding MGP_C57BL6NJ_T0041610.1 MGP_C57BL6NJ_G0022331.1 mouse_genomes_project 15 76339015 76376691 - MGP_C57BL6NJ_P0041610 Mroh5 protein_coding protein_coding MGP_C57BL6NJ_T0041611.1 MGP_C57BL6NJ_G0022331.1 mouse_genomes_project 15 76353677 76397876 - Mroh5 protein_coding retained_intron MGP_C57BL6NJ_T0042019.1 MGP_C57BL6NJ_G0022447.1 mouse_genomes_project 15 81427157 81440607 - MGP_C57BL6NJ_P0042019 Pvalb protein_coding protein_coding MGP_C57BL6NJ_T0042020.1 MGP_C57BL6NJ_G0022447.1 mouse_genomes_project 15 81427160 81442770 - MGP_C57BL6NJ_P0042020 Pvalb protein_coding protein_coding MGP_C57BL6NJ_T0042889.1 MGP_C57BL6NJ_G0022706.1 mouse_genomes_project 15 103858137 103865227 + MGP_C57BL6NJ_P0042889 Olfr282 protein_coding protein_coding MGP_C57BL6NJ_T0042890.1 MGP_C57BL6NJ_G0022706.1 mouse_genomes_project 15 103864781 103865709 + MGP_C57BL6NJ_P0042890 Olfr282 protein_coding protein_coding MGP_C57BL6NJ_T0041521.1 MGP_C57BL6NJ_G0022306.1 mouse_genomes_project 15 67897663 67957152 - MGP_C57BL6NJ_P0041521 Oc90 protein_coding protein_coding MGP_C57BL6NJ_T0041522.1 MGP_C57BL6NJ_G0022306.1 mouse_genomes_project 15 67897663 67957295 - MGP_C57BL6NJ_P0041522 Oc90 protein_coding protein_coding MGP_C57BL6NJ_T0041523.1 MGP_C57BL6NJ_G0022306.1 mouse_genomes_project 15 67897663 67938543 - MGP_C57BL6NJ_P0041523 Oc90 protein_coding protein_coding MGP_C57BL6NJ_T0041524.1 MGP_C57BL6NJ_G0022306.1 mouse_genomes_project 15 67898002 67916720 - MGP_C57BL6NJ_P0041524 Oc90 protein_coding protein_coding MGP_C57BL6NJ_T0041525.1 MGP_C57BL6NJ_G0022306.1 mouse_genomes_project 15 67898130 67913920 - MGP_C57BL6NJ_P0041525 Oc90 protein_coding protein_coding MGP_C57BL6NJ_T0010258.1 MGP_C57BL6NJ_G0008343.1 mouse_genomes_project 15 54700893 54700968 - Mir28c miRNA miRNA MGP_C57BL6NJ_T0041456.1 MGP_C57BL6NJ_G0022287.1 mouse_genomes_project 15 60394106 60541280 - MGP_C57BL6NJ_P0041456 Mtss1 protein_coding protein_coding MGP_C57BL6NJ_T0041457.1 MGP_C57BL6NJ_G0022287.1 mouse_genomes_project 15 60396292 60426706 - MGP_C57BL6NJ_P0041457 Mtss1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041321.1 MGP_C57BL6NJ_G0022234.1 mouse_genomes_project 15 44463137 44508497 + MGP_C57BL6NJ_P0041321 Trhr protein_coding protein_coding MGP_C57BL6NJ_T0041322.1 MGP_C57BL6NJ_G0022234.1 mouse_genomes_project 15 44463235 44506748 + MGP_C57BL6NJ_P0041322 Trhr protein_coding protein_coding MGP_C57BL6NJ_T0041315.1 MGP_C57BL6NJ_G0022229.1 mouse_genomes_project 15 42583588 42852603 - MGP_C57BL6NJ_P0041315 Angpt1 protein_coding protein_coding MGP_C57BL6NJ_T0041316.1 MGP_C57BL6NJ_G0022229.1 mouse_genomes_project 15 42585831 42852370 - MGP_C57BL6NJ_P0041316 Angpt1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042448.1 MGP_C57BL6NJ_G0022571.1 mouse_genomes_project 15 87139261 87174142 - MGP_C57BL6NJ_P0042448 A4galt protein_coding protein_coding MGP_C57BL6NJ_T0042449.1 MGP_C57BL6NJ_G0022571.1 mouse_genomes_project 15 87139261 87174099 - MGP_C57BL6NJ_P0042449 A4galt protein_coding protein_coding MGP_C57BL6NJ_T0042571.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93092879 93147396 - MGP_C57BL6NJ_P0042571 Brd1 protein_coding protein_coding MGP_C57BL6NJ_T0042572.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93093875 93142525 - MGP_C57BL6NJ_P0042572 Brd1 protein_coding protein_coding MGP_C57BL6NJ_T0042573.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93101659 93106500 - Brd1 protein_coding processed_transcript MGP_C57BL6NJ_T0042574.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93104486 93147393 - MGP_C57BL6NJ_P0042574 Brd1 protein_coding protein_coding MGP_C57BL6NJ_T0042575.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93119494 93125794 - Brd1 protein_coding processed_transcript MGP_C57BL6NJ_T0042576.1 MGP_C57BL6NJ_G0022616.1 mouse_genomes_project 15 93120027 93123679 - Brd1 protein_coding processed_transcript MGP_C57BL6NJ_T0041643.1 MGP_C57BL6NJ_G0022343.1 mouse_genomes_project 15 77358738 77360303 - MGP_C57BL6NJ_P0041643 Ly6d protein_coding protein_coding MGP_C57BL6NJ_T0101309.1 MGP_C57BL6NJ_G0039355.1 mouse_genomes_project 15 104698410 104698516 - Gm25183 snoRNA snoRNA MGP_C57BL6NJ_T0041213.1 MGP_C57BL6NJ_G0022194.1 mouse_genomes_project 15 35591936 35601377 - MGP_C57BL6NJ_P0041213 Cox6c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041214.1 MGP_C57BL6NJ_G0022194.1 mouse_genomes_project 15 35598026 35604292 - MGP_C57BL6NJ_P0041214 Cox6c protein_coding protein_coding MGP_C57BL6NJ_T0041215.1 MGP_C57BL6NJ_G0022194.1 mouse_genomes_project 15 35598030 35603691 - MGP_C57BL6NJ_P0041215 Cox6c protein_coding protein_coding MGP_C57BL6NJ_T0041216.1 MGP_C57BL6NJ_G0022194.1 mouse_genomes_project 15 35598033 35604253 - Cox6c protein_coding retained_intron MGP_C57BL6NJ_T0041217.1 MGP_C57BL6NJ_G0022194.1 mouse_genomes_project 15 35601432 35604055 - MGP_C57BL6NJ_P0041217 Cox6c protein_coding protein_coding MGP_C57BL6NJ_T0010284.1 MGP_C57BL6NJ_G0008369.1 mouse_genomes_project 15 86183206 86183292 + Gm25990 miRNA miRNA MGP_C57BL6NJ_T0011652.1 MGP_C57BL6NJ_G0009737.1 mouse_genomes_project 15 79186281 79186566 - Mirt2 misc_RNA misc_RNA MGP_C57BL6NJ_T0017920.1 MGP_C57BL6NJ_G0015688.1 mouse_genomes_project 15 62375415 62381795 + 9930014A18Rik processed_transcript antisense MGP_C57BL6NJ_T0017921.1 MGP_C57BL6NJ_G0015688.1 mouse_genomes_project 15 62376097 62378754 + 9930014A18Rik processed_transcript TEC MGP_C57BL6NJ_T0017922.1 MGP_C57BL6NJ_G0015688.1 mouse_genomes_project 15 62376546 62377084 + 9930014A18Rik processed_transcript antisense MGP_C57BL6NJ_T0017923.1 MGP_C57BL6NJ_G0015688.1 mouse_genomes_project 15 62377485 62384938 + 9930014A18Rik processed_transcript antisense MGP_C57BL6NJ_T0042802.1 MGP_C57BL6NJ_G0022680.1 mouse_genomes_project 15 101793164 101866298 - MGP_C57BL6NJ_P0042802 Slc38a1 protein_coding protein_coding MGP_C57BL6NJ_T0042803.1 MGP_C57BL6NJ_G0022680.1 mouse_genomes_project 15 101793164 101865917 - MGP_C57BL6NJ_P0042803 Slc38a1 protein_coding protein_coding MGP_C57BL6NJ_T0042804.1 MGP_C57BL6NJ_G0022680.1 mouse_genomes_project 15 101793164 101866867 - MGP_C57BL6NJ_P0042804 Slc38a1 protein_coding protein_coding MGP_C57BL6NJ_T0006955.1 MGP_C57BL6NJ_G0005736.1 mouse_genomes_project 15 86857473 86864305 - Gm29019 lincRNA lincRNA MGP_C57BL6NJ_T0006956.1 MGP_C57BL6NJ_G0005736.1 mouse_genomes_project 15 86857532 86864187 - Gm29019 lincRNA lincRNA MGP_C57BL6NJ_T0010262.1 MGP_C57BL6NJ_G0008347.1 mouse_genomes_project 15 75765117 75765185 - Mir151 miRNA miRNA MGP_C57BL6NJ_T0042373.1 MGP_C57BL6NJ_G0022540.1 mouse_genomes_project 15 85761249 85765794 - MGP_C57BL6NJ_P0042373 protein_coding protein_coding MGP_C57BL6NJ_T0043120.1 MGP_C57BL6NJ_G0022780.1 mouse_genomes_project 15 107062599 107103707 + MGP_C57BL6NJ_P0043120 Acvr1b protein_coding protein_coding MGP_C57BL6NJ_T0041603.1 MGP_C57BL6NJ_G0022330.1 mouse_genomes_project 15 76269406 76309219 + MGP_C57BL6NJ_P0041603 Ptp4a3 protein_coding protein_coding MGP_C57BL6NJ_T0041604.1 MGP_C57BL6NJ_G0022330.1 mouse_genomes_project 15 76269406 76309219 + MGP_C57BL6NJ_P0041604 Ptp4a3 protein_coding protein_coding MGP_C57BL6NJ_T0041605.1 MGP_C57BL6NJ_G0022330.1 mouse_genomes_project 15 76273307 76309219 + MGP_C57BL6NJ_P0041605 Ptp4a3 protein_coding protein_coding MGP_C57BL6NJ_T0041606.1 MGP_C57BL6NJ_G0022330.1 mouse_genomes_project 15 76298478 76309219 + MGP_C57BL6NJ_P0041606 Ptp4a3 protein_coding protein_coding MGP_C57BL6NJ_T0003791.1 MGP_C57BL6NJ_G0003421.1 mouse_genomes_project 15 106412829 106418846 + Gm20680 antisense antisense MGP_C57BL6NJ_T0013389.1 MGP_C57BL6NJ_G0011434.1 mouse_genomes_project 15 37767053 37767480 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042920.1 MGP_C57BL6NJ_G0022718.1 mouse_genomes_project 15 104198870 104202767 - MGP_C57BL6NJ_P0042920 Fkbp11 protein_coding protein_coding MGP_C57BL6NJ_T0010273.1 MGP_C57BL6NJ_G0008358.1 mouse_genomes_project 15 82787778 82787851 - Mir1943 miRNA miRNA MGP_C57BL6NJ_T0041532.1 MGP_C57BL6NJ_G0022311.1 mouse_genomes_project 15 68660400 68729733 + MGP_C57BL6NJ_P0041532 Phf20l1 protein_coding protein_coding MGP_C57BL6NJ_T0042987.1 MGP_C57BL6NJ_G0022741.1 mouse_genomes_project 15 105091070 105095831 - MGP_C57BL6NJ_P0042987 Bcdin3d protein_coding protein_coding MGP_C57BL6NJ_T0041526.1 MGP_C57BL6NJ_G0022307.1 mouse_genomes_project 15 67968224 68017602 - MGP_C57BL6NJ_P0041526 Hhla1 protein_coding protein_coding MGP_C57BL6NJ_T0041263.1 MGP_C57BL6NJ_G0022209.1 mouse_genomes_project 15 37290867 37305857 + MGP_C57BL6NJ_P0041263 4930447A16Rik protein_coding protein_coding MGP_C57BL6NJ_T0001073.1 MGP_C57BL6NJ_G0000982.1 mouse_genomes_project 15 77625586 77626167 + TEC TEC MGP_C57BL6NJ_T0042381.1 MGP_C57BL6NJ_G0022545.1 mouse_genomes_project 15 85939432 85945377 - MGP_C57BL6NJ_P0042381 Shisa8 protein_coding protein_coding MGP_C57BL6NJ_T0043270.1 MGP_C57BL6NJ_G0022840.1 mouse_genomes_project 15 109067041 109068894 + MGP_C57BL6NJ_P0043270 Hoxc12 protein_coding protein_coding MGP_C57BL6NJ_T0006910.1 MGP_C57BL6NJ_G0005707.1 mouse_genomes_project 15 8165171 8172283 + 4930556M19Rik lincRNA lincRNA MGP_C57BL6NJ_T0041024.1 MGP_C57BL6NJ_G0022125.1 mouse_genomes_project 15 7740929 7783104 + MGP_C57BL6NJ_P0041024 Gm21973 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0001065.1 MGP_C57BL6NJ_G0000974.1 mouse_genomes_project 15 10233796 10236081 - TEC TEC MGP_C57BL6NJ_T0041990.1 MGP_C57BL6NJ_G0022437.1 mouse_genomes_project 15 80850729 80882255 + MGP_C57BL6NJ_P0041990 protein_coding protein_coding MGP_C57BL6NJ_T0042358.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85704645 85739715 + MGP_C57BL6NJ_P0042358 Xrcc6 protein_coding protein_coding MGP_C57BL6NJ_T0042365.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85733538 85757554 + MGP_C57BL6NJ_P0042365 Xrcc6 protein_coding protein_coding MGP_C57BL6NJ_T0042366.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85733597 85742778 + MGP_C57BL6NJ_P0042366 Xrcc6 protein_coding protein_coding MGP_C57BL6NJ_T0042367.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85733648 85742827 + MGP_C57BL6NJ_P0042367 Xrcc6 protein_coding protein_coding MGP_C57BL6NJ_T0042368.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85739423 85740071 + Xrcc6 protein_coding retained_intron MGP_C57BL6NJ_T0042369.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85740116 85744897 + Xrcc6 protein_coding retained_intron MGP_C57BL6NJ_T0042370.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85742529 85746774 + Xrcc6 protein_coding retained_intron MGP_C57BL6NJ_T0042371.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85745204 85757263 + Xrcc6 protein_coding processed_transcript MGP_C57BL6NJ_T0042372.1 MGP_C57BL6NJ_G0022538.1 mouse_genomes_project 15 85746241 85754980 + Xrcc6 protein_coding retained_intron MGP_C57BL6NJ_T0101300.1 MGP_C57BL6NJ_G0039346.1 mouse_genomes_project 15 83548207 83548300 - Gm22077 snoRNA snoRNA MGP_C57BL6NJ_T0013386.1 MGP_C57BL6NJ_G0011431.1 mouse_genomes_project 15 37188941 37189619 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042238.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83801783 83923719 + MGP_C57BL6NJ_P0042238 Cacna1i protein_coding protein_coding MGP_C57BL6NJ_T0042239.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83801792 83921140 + MGP_C57BL6NJ_P0042239 Cacna1i protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042240.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83801879 83923729 + MGP_C57BL6NJ_P0042240 Cacna1i protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042241.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83914692 83916282 + MGP_C57BL6NJ_P0042241 Cacna1i protein_coding protein_coding MGP_C57BL6NJ_T0042242.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83914692 83916282 + MGP_C57BL6NJ_P0042242 Cacna1i protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042243.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83914692 83919185 + MGP_C57BL6NJ_P0042243 Cacna1i protein_coding protein_coding MGP_C57BL6NJ_T0042244.1 MGP_C57BL6NJ_G0022509.1 mouse_genomes_project 15 83914692 83916282 + MGP_C57BL6NJ_P0042244 Cacna1i protein_coding protein_coding MGP_C57BL6NJ_T0042054.1 MGP_C57BL6NJ_G0022461.1 mouse_genomes_project 15 82081982 82101496 - MGP_C57BL6NJ_P0042054 Mfng protein_coding protein_coding MGP_C57BL6NJ_T0042055.1 MGP_C57BL6NJ_G0022461.1 mouse_genomes_project 15 82087283 82095213 - Mfng protein_coding retained_intron MGP_C57BL6NJ_T0042056.1 MGP_C57BL6NJ_G0022461.1 mouse_genomes_project 15 82091906 82095187 - Mfng protein_coding retained_intron MGP_C57BL6NJ_T0042057.1 MGP_C57BL6NJ_G0022461.1 mouse_genomes_project 15 82094896 82099915 - Mfng protein_coding processed_transcript MGP_C57BL6NJ_T0041055.1 MGP_C57BL6NJ_G0022138.1 mouse_genomes_project 15 9378209 9450229 - MGP_C57BL6NJ_P0041055 Npr3 protein_coding protein_coding MGP_C57BL6NJ_T0041359.1 MGP_C57BL6NJ_G0022247.1 mouse_genomes_project 15 53288324 53334182 + MGP_C57BL6NJ_P0041359 Slc30a8 protein_coding protein_coding MGP_C57BL6NJ_T0042012.1 MGP_C57BL6NJ_G0022443.1 mouse_genomes_project 15 81151509 81168942 - MGP_C57BL6NJ_P0042012 Foxred2 protein_coding protein_coding MGP_C57BL6NJ_T0042013.1 MGP_C57BL6NJ_G0022443.1 mouse_genomes_project 15 81151513 81156876 - Foxred2 protein_coding retained_intron MGP_C57BL6NJ_T0042014.1 MGP_C57BL6NJ_G0022443.1 mouse_genomes_project 15 81152006 81168895 - MGP_C57BL6NJ_P0042014 Foxred2 protein_coding protein_coding MGP_C57BL6NJ_T0042015.1 MGP_C57BL6NJ_G0022443.1 mouse_genomes_project 15 81165149 81168903 - Foxred2 protein_coding retained_intron MGP_C57BL6NJ_T0042401.1 MGP_C57BL6NJ_G0022555.1 mouse_genomes_project 15 86126412 86136216 - MGP_C57BL6NJ_P0042401 Cyp2d22 protein_coding protein_coding MGP_C57BL6NJ_T0041228.1 MGP_C57BL6NJ_G0022199.1 mouse_genomes_project 15 35925364 35976720 - MGP_C57BL6NJ_P0041228 Rnf19a protein_coding protein_coding MGP_C57BL6NJ_T0010311.1 MGP_C57BL6NJ_G0008396.1 mouse_genomes_project 15 107617438 107617554 + Gm44479 miRNA miRNA MGP_C57BL6NJ_T0041745.1 MGP_C57BL6NJ_G0022374.1 mouse_genomes_project 15 78826146 78834572 + MGP_C57BL6NJ_P0041745 Zfp623 protein_coding protein_coding MGP_C57BL6NJ_T0041993.1 MGP_C57BL6NJ_G0022439.1 mouse_genomes_project 15 80895386 80906695 + MGP_C57BL6NJ_P0041993 protein_coding protein_coding MGP_C57BL6NJ_T0041242.1 MGP_C57BL6NJ_G0022204.1 mouse_genomes_project 15 36543426 36564840 - MGP_C57BL6NJ_P0041242 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041243.1 MGP_C57BL6NJ_G0022204.1 mouse_genomes_project 15 36545753 36564147 - protein_coding retained_intron MGP_C57BL6NJ_T0041244.1 MGP_C57BL6NJ_G0022204.1 mouse_genomes_project 15 36561339 36563042 - MGP_C57BL6NJ_P0041244 protein_coding protein_coding MGP_C57BL6NJ_T0041245.1 MGP_C57BL6NJ_G0022204.1 mouse_genomes_project 15 36561471 36563838 - MGP_C57BL6NJ_P0041245 protein_coding protein_coding MGP_C57BL6NJ_T0041246.1 MGP_C57BL6NJ_G0022204.1 mouse_genomes_project 15 36561526 36565175 - MGP_C57BL6NJ_P0041246 protein_coding protein_coding MGP_C57BL6NJ_T0041904.1 MGP_C57BL6NJ_G0022407.1 mouse_genomes_project 15 79547494 79559294 - MGP_C57BL6NJ_P0041904 Cpsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043166.1 MGP_C57BL6NJ_G0022816.1 mouse_genomes_project 15 108182509 108195317 + MGP_C57BL6NJ_P0043166 Soat2 protein_coding protein_coding MGP_C57BL6NJ_T0043167.1 MGP_C57BL6NJ_G0022816.1 mouse_genomes_project 15 108183099 108194975 + MGP_C57BL6NJ_P0043167 Soat2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042583.1 MGP_C57BL6NJ_G0022620.1 mouse_genomes_project 15 93292371 93295904 + MGP_C57BL6NJ_P0042583 Pim3 protein_coding protein_coding MGP_C57BL6NJ_T0041890.1 MGP_C57BL6NJ_G0022405.1 mouse_genomes_project 15 79485623 79488811 + MGP_C57BL6NJ_P0041890 Slc52a2 protein_coding protein_coding MGP_C57BL6NJ_T0041422.1 MGP_C57BL6NJ_G0022270.1 mouse_genomes_project 15 59366492 59392463 + MGP_C57BL6NJ_P0041422 Fam83a protein_coding protein_coding MGP_C57BL6NJ_T0041423.1 MGP_C57BL6NJ_G0022270.1 mouse_genomes_project 15 59366983 59376666 + MGP_C57BL6NJ_P0041423 Fam83a protein_coding protein_coding MGP_C57BL6NJ_T0041424.1 MGP_C57BL6NJ_G0022270.1 mouse_genomes_project 15 59383598 59391501 + Fam83a protein_coding processed_transcript MGP_C57BL6NJ_T0003775.1 MGP_C57BL6NJ_G0003408.1 mouse_genomes_project 15 90378208 90379633 + Gm15569 antisense antisense MGP_C57BL6NJ_T0041742.1 MGP_C57BL6NJ_G0022371.1 mouse_genomes_project 15 78795817 78800603 + MGP_C57BL6NJ_P0041742 Tigd5 protein_coding protein_coding MGP_C57BL6NJ_T0041314.1 MGP_C57BL6NJ_G0022228.1 mouse_genomes_project 15 41964344 41968772 - MGP_C57BL6NJ_P0041314 Abra protein_coding protein_coding MGP_C57BL6NJ_T0042098.1 MGP_C57BL6NJ_G0022473.1 mouse_genomes_project 15 82442072 82465857 + MGP_C57BL6NJ_P0042098 Eif3l protein_coding protein_coding MGP_C57BL6NJ_T0042692.1 MGP_C57BL6NJ_G0022647.1 mouse_genomes_project 15 93949397 93961566 + MGP_C57BL6NJ_P0042692 Mapk8ip2 protein_coding protein_coding MGP_C57BL6NJ_T0042693.1 MGP_C57BL6NJ_G0022647.1 mouse_genomes_project 15 93952176 93953793 + MGP_C57BL6NJ_P0042693 Mapk8ip2 protein_coding protein_coding MGP_C57BL6NJ_T0041157.1 MGP_C57BL6NJ_G0022173.1 mouse_genomes_project 15 31017347 31036008 + MGP_C57BL6NJ_P0041157 Cmbl protein_coding protein_coding MGP_C57BL6NJ_T0041158.1 MGP_C57BL6NJ_G0022173.1 mouse_genomes_project 15 31017461 31037866 + MGP_C57BL6NJ_P0041158 Cmbl protein_coding protein_coding MGP_C57BL6NJ_T0041159.1 MGP_C57BL6NJ_G0022173.1 mouse_genomes_project 15 31020744 31033076 + MGP_C57BL6NJ_P0041159 Cmbl protein_coding protein_coding MGP_C57BL6NJ_T0003794.1 MGP_C57BL6NJ_G0003424.1 mouse_genomes_project 15 107011995 107015158 - antisense antisense MGP_C57BL6NJ_T0099956.1 MGP_C57BL6NJ_G0038002.1 mouse_genomes_project 15 5467408 5467519 + Gm24144 snRNA snRNA MGP_C57BL6NJ_T0017946.1 MGP_C57BL6NJ_G0015702.1 mouse_genomes_project 15 104829998 104861490 + processed_transcript antisense MGP_C57BL6NJ_T0017947.1 MGP_C57BL6NJ_G0015702.1 mouse_genomes_project 15 104830046 104861208 + processed_transcript antisense MGP_C57BL6NJ_T0017948.1 MGP_C57BL6NJ_G0015702.1 mouse_genomes_project 15 104830048 104852492 + processed_transcript retained_intron MGP_C57BL6NJ_T0003793.1 MGP_C57BL6NJ_G0003423.1 mouse_genomes_project 15 106540504 106549716 + Galnt6os antisense antisense MGP_C57BL6NJ_T0041286.1 MGP_C57BL6NJ_G0022216.1 mouse_genomes_project 15 38778046 38796475 + MGP_C57BL6NJ_P0041286 Baalc protein_coding protein_coding MGP_C57BL6NJ_T0099996.1 MGP_C57BL6NJ_G0038042.1 mouse_genomes_project 15 89458702 89458894 - Gm23517 snRNA snRNA MGP_C57BL6NJ_T0006946.1 MGP_C57BL6NJ_G0005727.1 mouse_genomes_project 15 69335081 69490582 + lincRNA lincRNA MGP_C57BL6NJ_T0013380.1 MGP_C57BL6NJ_G0011425.1 mouse_genomes_project 15 17808499 17810290 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006965.1 MGP_C57BL6NJ_G0005742.1 mouse_genomes_project 15 96299609 96308909 + 4933438A12Rik lincRNA lincRNA MGP_C57BL6NJ_T0042919.1 MGP_C57BL6NJ_G0022717.1 mouse_genomes_project 15 104179697 104197824 + MGP_C57BL6NJ_P0042919 Ccdc65 protein_coding protein_coding MGP_C57BL6NJ_T0003771.1 MGP_C57BL6NJ_G0003404.1 mouse_genomes_project 15 85031890 85035519 - Gm17025 antisense antisense MGP_C57BL6NJ_T0003779.1 MGP_C57BL6NJ_G0003410.1 mouse_genomes_project 15 103104877 103111473 + Rapgef3os1 antisense antisense MGP_C57BL6NJ_T0043168.1 MGP_C57BL6NJ_G0022817.1 mouse_genomes_project 15 108210626 108238529 - MGP_C57BL6NJ_P0043168 Csad protein_coding protein_coding MGP_C57BL6NJ_T0043169.1 MGP_C57BL6NJ_G0022817.1 mouse_genomes_project 15 108210626 108238524 - MGP_C57BL6NJ_P0043169 Csad protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102873.1 MGP_C57BL6NJ_G0040667.1 mouse_genomes_project 15 78087472 78091062 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0043078.1 MGP_C57BL6NJ_G0022773.1 mouse_genomes_project 15 106515076 106530422 - MGP_C57BL6NJ_P0043078 Cela1 protein_coding protein_coding MGP_C57BL6NJ_T0041443.1 MGP_C57BL6NJ_G0022278.1 mouse_genomes_project 15 59748833 59781207 - MGP_C57BL6NJ_P0041443 Anxa13 protein_coding protein_coding MGP_C57BL6NJ_T0041444.1 MGP_C57BL6NJ_G0022278.1 mouse_genomes_project 15 59748833 59809295 - MGP_C57BL6NJ_P0041444 Anxa13 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043245.1 MGP_C57BL6NJ_G0022834.1 mouse_genomes_project 15 108613701 108614578 - MGP_C57BL6NJ_P0043245 Npff protein_coding protein_coding MGP_C57BL6NJ_T0043247.1 MGP_C57BL6NJ_G0022834.1 mouse_genomes_project 15 108613708 108614805 - Npff protein_coding retained_intron MGP_C57BL6NJ_T0102422.1 MGP_C57BL6NJ_G0040336.1 mouse_genomes_project 15 65727085 65805573 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102423.1 MGP_C57BL6NJ_G0040336.1 mouse_genomes_project 15 65727901 65809132 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0041135.1 MGP_C57BL6NJ_G0022160.1 mouse_genomes_project 15 25623530 25988201 - MGP_C57BL6NJ_P0041135 Fbxl7 protein_coding protein_coding MGP_C57BL6NJ_T0041571.1 MGP_C57BL6NJ_G0022320.1 mouse_genomes_project 15 74215068 74461108 - MGP_C57BL6NJ_P0041571 Col22a1 protein_coding protein_coding MGP_C57BL6NJ_T0041572.1 MGP_C57BL6NJ_G0022320.1 mouse_genomes_project 15 74290688 74319737 - MGP_C57BL6NJ_P0041572 Col22a1 protein_coding protein_coding MGP_C57BL6NJ_T0041573.1 MGP_C57BL6NJ_G0022320.1 mouse_genomes_project 15 74326848 74377609 - Col22a1 protein_coding processed_transcript MGP_C57BL6NJ_T0041574.1 MGP_C57BL6NJ_G0022320.1 mouse_genomes_project 15 74345020 74377634 - MGP_C57BL6NJ_P0041574 Col22a1 protein_coding protein_coding MGP_C57BL6NJ_T0010255.1 MGP_C57BL6NJ_G0008340.1 mouse_genomes_project 15 40139264 40139335 - Gm25958 miRNA miRNA MGP_C57BL6NJ_T0041624.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77197334 77228430 - MGP_C57BL6NJ_P0041624 Mroh4 protein_coding protein_coding MGP_C57BL6NJ_T0041625.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77197334 77226926 - MGP_C57BL6NJ_P0041625 Mroh4 protein_coding protein_coding MGP_C57BL6NJ_T0041626.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77197708 77203318 - MGP_C57BL6NJ_P0041626 Mroh4 protein_coding protein_coding MGP_C57BL6NJ_T0041627.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77197720 77199534 - Mroh4 protein_coding retained_intron MGP_C57BL6NJ_T0041628.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77207443 77220491 - MGP_C57BL6NJ_P0041628 Mroh4 protein_coding protein_coding MGP_C57BL6NJ_T0041629.1 MGP_C57BL6NJ_G0022334.1 mouse_genomes_project 15 77223726 77228375 - Mroh4 protein_coding processed_transcript MGP_C57BL6NJ_T0102859.1 MGP_C57BL6NJ_G0040653.1 mouse_genomes_project 15 36001 37835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041143.1 MGP_C57BL6NJ_G0022166.1 mouse_genomes_project 15 27348198 27633698 + MGP_C57BL6NJ_P0041143 Dnah5 protein_coding protein_coding MGP_C57BL6NJ_T0041770.1 MGP_C57BL6NJ_G0022381.1 mouse_genomes_project 15 78962404 78973167 - MGP_C57BL6NJ_P0041770 Puf60 protein_coding protein_coding MGP_C57BL6NJ_T0041771.1 MGP_C57BL6NJ_G0022381.1 mouse_genomes_project 15 78962404 78973167 - MGP_C57BL6NJ_P0041771 Puf60 protein_coding protein_coding MGP_C57BL6NJ_T0042027.1 MGP_C57BL6NJ_G0022449.1 mouse_genomes_project 15 81604443 81638154 + MGP_C57BL6NJ_P0042027 protein_coding protein_coding MGP_C57BL6NJ_T0099021.1 MGP_C57BL6NJ_G0037085.1 mouse_genomes_project 15 86097012 86097131 + n-R5s41 rRNA rRNA MGP_C57BL6NJ_T0042072.1 MGP_C57BL6NJ_G0022467.1 mouse_genomes_project 15 82280159 82285038 + MGP_C57BL6NJ_P0042072 Lgals1 protein_coding protein_coding MGP_C57BL6NJ_T0042832.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103138697 103179409 - MGP_C57BL6NJ_P0042832 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0042833.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103138714 103179682 - MGP_C57BL6NJ_P0042833 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0042834.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103138720 103140479 - Hdac7 protein_coding retained_intron MGP_C57BL6NJ_T0042835.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103138742 103179409 - MGP_C57BL6NJ_P0042835 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0042836.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103139730 103179292 - MGP_C57BL6NJ_P0042836 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0042837.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103143832 103179384 - MGP_C57BL6NJ_P0042837 Hdac7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042838.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103145642 103155381 - MGP_C57BL6NJ_P0042838 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0042839.1 MGP_C57BL6NJ_G0022690.1 mouse_genomes_project 15 103147315 103155732 - MGP_C57BL6NJ_P0042839 Hdac7 protein_coding protein_coding MGP_C57BL6NJ_T0013400.1 MGP_C57BL6NJ_G0011445.1 mouse_genomes_project 15 61521206 61522213 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042550.1 MGP_C57BL6NJ_G0022608.1 mouse_genomes_project 15 90022723 90039535 + MGP_C57BL6NJ_P0042550 Gtse1 protein_coding protein_coding MGP_C57BL6NJ_T0042897.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103983167 103989668 - protein_coding processed_transcript MGP_C57BL6NJ_T0042898.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103984852 104015898 - MGP_C57BL6NJ_P0042898 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042899.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103989858 104015898 - MGP_C57BL6NJ_P0042899 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042900.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103990786 104002384 - protein_coding retained_intron MGP_C57BL6NJ_T0042901.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103990987 103993668 - protein_coding retained_intron MGP_C57BL6NJ_T0042902.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103991214 104013401 - protein_coding retained_intron MGP_C57BL6NJ_T0042903.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 103995299 104015807 - protein_coding retained_intron MGP_C57BL6NJ_T0042904.1 MGP_C57BL6NJ_G0022711.1 mouse_genomes_project 15 104006415 104015942 - protein_coding retained_intron MGP_C57BL6NJ_T0011663.1 MGP_C57BL6NJ_G0009748.1 mouse_genomes_project 15 109079678 109079853 + Gm28011 misc_RNA misc_RNA MGP_C57BL6NJ_T0041139.1 MGP_C57BL6NJ_G0022163.1 mouse_genomes_project 15 26722045 26755106 - MGP_C57BL6NJ_P0041139 Otulin protein_coding unknown_likely_coding MGP_C57BL6NJ_T0001075.1 MGP_C57BL6NJ_G0000984.1 mouse_genomes_project 15 89783727 89787065 + TEC TEC MGP_C57BL6NJ_T0042028.1 MGP_C57BL6NJ_G0022450.1 mouse_genomes_project 15 81674716 81684750 - MGP_C57BL6NJ_P0042028 Tex33 protein_coding protein_coding MGP_C57BL6NJ_T0042029.1 MGP_C57BL6NJ_G0022450.1 mouse_genomes_project 15 81674716 81691861 - MGP_C57BL6NJ_P0042029 Tex33 protein_coding protein_coding MGP_C57BL6NJ_T0042030.1 MGP_C57BL6NJ_G0022450.1 mouse_genomes_project 15 81674716 81691861 - MGP_C57BL6NJ_P0042030 Tex33 protein_coding protein_coding MGP_C57BL6NJ_T0043273.1 MGP_C57BL6NJ_G0022843.1 mouse_genomes_project 15 109097600 109146808 + Hoxc5 protein_coding processed_transcript MGP_C57BL6NJ_T0043281.1 MGP_C57BL6NJ_G0022843.1 mouse_genomes_project 15 109144946 109148561 + MGP_C57BL6NJ_P0043281 Hoxc5 protein_coding protein_coding MGP_C57BL6NJ_T0041656.1 MGP_C57BL6NJ_G0022350.1 mouse_genomes_project 15 77491174 77512269 - 2010109I03Rik protein_coding processed_transcript MGP_C57BL6NJ_T0041657.1 MGP_C57BL6NJ_G0022350.1 mouse_genomes_project 15 77492386 77495710 - MGP_C57BL6NJ_P0041657 2010109I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0041482.1 MGP_C57BL6NJ_G0022299.1 mouse_genomes_project 15 65603181 65798341 - MGP_C57BL6NJ_P0041482 protein_coding protein_coding MGP_C57BL6NJ_T0041483.1 MGP_C57BL6NJ_G0022299.1 mouse_genomes_project 15 65603182 65789015 - MGP_C57BL6NJ_P0041483 protein_coding protein_coding MGP_C57BL6NJ_T0042584.1 MGP_C57BL6NJ_G0022621.1 mouse_genomes_project 15 93321815 93394087 - MGP_C57BL6NJ_P0042584 Ttll8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042585.1 MGP_C57BL6NJ_G0022621.1 mouse_genomes_project 15 93346488 93394079 - MGP_C57BL6NJ_P0042585 Ttll8 protein_coding protein_coding MGP_C57BL6NJ_T0042586.1 MGP_C57BL6NJ_G0022621.1 mouse_genomes_project 15 93346544 93393728 - MGP_C57BL6NJ_P0042586 Ttll8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042587.1 MGP_C57BL6NJ_G0022621.1 mouse_genomes_project 15 93348259 93352459 - Ttll8 protein_coding retained_intron MGP_C57BL6NJ_T0043290.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389186 109396281 - MGP_C57BL6NJ_P0043290 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043291.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389191 109392367 - MGP_C57BL6NJ_P0043291 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043292.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389191 109392316 - MGP_C57BL6NJ_P0043292 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043293.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389194 109392527 - MGP_C57BL6NJ_P0043293 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043294.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389249 109392366 - MGP_C57BL6NJ_P0043294 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043295.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389929 109394003 - MGP_C57BL6NJ_P0043295 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043296.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109389981 109394904 - MGP_C57BL6NJ_P0043296 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043297.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109390043 109392538 - MGP_C57BL6NJ_P0043297 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043298.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109390213 109393661 - MGP_C57BL6NJ_P0043298 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0043299.1 MGP_C57BL6NJ_G0022851.1 mouse_genomes_project 15 109390323 109399237 - MGP_C57BL6NJ_P0043299 Nfe2 protein_coding protein_coding MGP_C57BL6NJ_T0003770.1 MGP_C57BL6NJ_G0003403.1 mouse_genomes_project 15 82847032 82851425 + Gm16059 antisense antisense MGP_C57BL6NJ_T0041230.1 MGP_C57BL6NJ_G0022201.1 mouse_genomes_project 15 36194478 36213584 - MGP_C57BL6NJ_P0041230 Ankrd46 protein_coding protein_coding MGP_C57BL6NJ_T0042400.1 MGP_C57BL6NJ_G0022554.1 mouse_genomes_project 15 86106303 86110637 - MGP_C57BL6NJ_P0042400 Ndufa6 protein_coding protein_coding MGP_C57BL6NJ_T0042943.1 MGP_C57BL6NJ_G0022728.1 mouse_genomes_project 15 104544309 104544624 + MGP_C57BL6NJ_P0042943 Gm8973 protein_coding protein_coding MGP_C57BL6NJ_T0101276.1 MGP_C57BL6NJ_G0039322.1 mouse_genomes_project 15 30592685 30592819 - Gm26416 snoRNA snoRNA MGP_C57BL6NJ_T0010261.1 MGP_C57BL6NJ_G0008346.1 mouse_genomes_project 15 70482536 70482618 - Mir30d miRNA miRNA MGP_C57BL6NJ_T0041029.1 MGP_C57BL6NJ_G0022127.1 mouse_genomes_project 15 7867063 7892356 - MGP_C57BL6NJ_P0041029 Dnajc21 protein_coding protein_coding MGP_C57BL6NJ_T0041030.1 MGP_C57BL6NJ_G0022127.1 mouse_genomes_project 15 7867072 7883636 - MGP_C57BL6NJ_P0041030 Dnajc21 protein_coding protein_coding MGP_C57BL6NJ_T0041031.1 MGP_C57BL6NJ_G0022127.1 mouse_genomes_project 15 7867073 7870300 - Dnajc21 protein_coding retained_intron MGP_C57BL6NJ_T0041032.1 MGP_C57BL6NJ_G0022127.1 mouse_genomes_project 15 7872922 7884157 - Dnajc21 protein_coding retained_intron MGP_C57BL6NJ_T0013378.1 MGP_C57BL6NJ_G0011423.1 mouse_genomes_project 15 16414435 16421863 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003782.1 MGP_C57BL6NJ_G0003413.1 mouse_genomes_project 15 104015585 104017909 + 9330020H09Rik antisense antisense MGP_C57BL6NJ_T0042906.1 MGP_C57BL6NJ_G0022713.1 mouse_genomes_project 15 104044027 104065064 - MGP_C57BL6NJ_P0042906 Adcy6 protein_coding protein_coding MGP_C57BL6NJ_T0042907.1 MGP_C57BL6NJ_G0022713.1 mouse_genomes_project 15 104046383 104070075 - MGP_C57BL6NJ_P0042907 Adcy6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010257.1 MGP_C57BL6NJ_G0008342.1 mouse_genomes_project 15 51742154 51742244 - Mir1907 miRNA miRNA MGP_C57BL6NJ_T0042164.1 MGP_C57BL6NJ_G0022488.1 mouse_genomes_project 15 82986829 83037423 - MGP_C57BL6NJ_P0042164 Dmc1 protein_coding protein_coding MGP_C57BL6NJ_T0010254.1 MGP_C57BL6NJ_G0008339.1 mouse_genomes_project 15 39183887 39183996 - Gm25381 miRNA miRNA MGP_C57BL6NJ_T0042810.1 MGP_C57BL6NJ_G0022685.1 mouse_genomes_project 15 102534633 102688365 + MGP_C57BL6NJ_P0042810 Pced1b protein_coding protein_coding MGP_C57BL6NJ_T0041383.1 MGP_C57BL6NJ_G0022259.1 mouse_genomes_project 15 56274599 56289524 - MGP_C57BL6NJ_P0041383 Gm9920 protein_coding protein_coding MGP_C57BL6NJ_T0041384.1 MGP_C57BL6NJ_G0022259.1 mouse_genomes_project 15 56274747 56289402 - MGP_C57BL6NJ_P0041384 Gm9920 protein_coding protein_coding MGP_C57BL6NJ_T0041385.1 MGP_C57BL6NJ_G0022259.1 mouse_genomes_project 15 56286217 56289619 - Gm9920 protein_coding processed_transcript MGP_C57BL6NJ_T0041386.1 MGP_C57BL6NJ_G0022259.1 mouse_genomes_project 15 56287804 56289402 - Gm9920 protein_coding retained_intron MGP_C57BL6NJ_T0041136.1 MGP_C57BL6NJ_G0022161.1 mouse_genomes_project 15 26141815 26142646 + MGP_C57BL6NJ_P0041136 Gm6576 protein_coding protein_coding MGP_C57BL6NJ_T0041317.1 MGP_C57BL6NJ_G0022230.1 mouse_genomes_project 15 43207818 43365253 - MGP_C57BL6NJ_P0041317 Rspo2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003751.1 MGP_C57BL6NJ_G0003388.1 mouse_genomes_project 15 37225058 37226352 + Gm28221 antisense antisense MGP_C57BL6NJ_T0041963.1 MGP_C57BL6NJ_G0022423.1 mouse_genomes_project 15 79894865 79897113 + MGP_C57BL6NJ_P0041963 Rpl8 protein_coding protein_coding MGP_C57BL6NJ_T0006951.1 MGP_C57BL6NJ_G0005732.1 mouse_genomes_project 15 82204722 82208656 - Gm26634 lincRNA lincRNA MGP_C57BL6NJ_T0042147.1 MGP_C57BL6NJ_G0022483.1 mouse_genomes_project 15 82773229 82819330 - MGP_C57BL6NJ_P0042147 Tmem184b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042148.1 MGP_C57BL6NJ_G0022483.1 mouse_genomes_project 15 82773234 82819370 - MGP_C57BL6NJ_P0042148 Tmem184b protein_coding protein_coding MGP_C57BL6NJ_T0042149.1 MGP_C57BL6NJ_G0022483.1 mouse_genomes_project 15 82773234 82818986 - MGP_C57BL6NJ_P0042149 Tmem184b protein_coding protein_coding MGP_C57BL6NJ_T0101266.1 MGP_C57BL6NJ_G0039312.1 mouse_genomes_project 15 8860959 8861086 - Gm24844 snoRNA snoRNA MGP_C57BL6NJ_T0043272.1 MGP_C57BL6NJ_G0022842.1 mouse_genomes_project 15 109096953 109103087 + MGP_C57BL6NJ_P0043272 Hoxc10 protein_coding protein_coding MGP_C57BL6NJ_T0041249.1 MGP_C57BL6NJ_G0022207.1 mouse_genomes_project 15 37065627 37221423 + MGP_C57BL6NJ_P0041249 Grhl2 protein_coding protein_coding MGP_C57BL6NJ_T0041250.1 MGP_C57BL6NJ_G0022207.1 mouse_genomes_project 15 37065627 37190600 + MGP_C57BL6NJ_P0041250 Grhl2 protein_coding protein_coding MGP_C57BL6NJ_T0041251.1 MGP_C57BL6NJ_G0022207.1 mouse_genomes_project 15 37065649 37118253 + MGP_C57BL6NJ_P0041251 Grhl2 protein_coding protein_coding MGP_C57BL6NJ_T0041252.1 MGP_C57BL6NJ_G0022207.1 mouse_genomes_project 15 37158708 37221416 + Grhl2 protein_coding processed_transcript MGP_C57BL6NJ_T0041253.1 MGP_C57BL6NJ_G0022207.1 mouse_genomes_project 15 37192689 37218794 + MGP_C57BL6NJ_P0041253 Grhl2 protein_coding protein_coding MGP_C57BL6NJ_T0041751.1 MGP_C57BL6NJ_G0022376.1 mouse_genomes_project 15 78869925 78872509 - MGP_C57BL6NJ_P0041751 Ccdc166 protein_coding protein_coding MGP_C57BL6NJ_T0041752.1 MGP_C57BL6NJ_G0022376.1 mouse_genomes_project 15 78870820 78872496 - MGP_C57BL6NJ_P0041752 Ccdc166 protein_coding protein_coding MGP_C57BL6NJ_T0041149.1 MGP_C57BL6NJ_G0022169.1 mouse_genomes_project 15 30685145 30685562 + MGP_C57BL6NJ_P0041149 Fam136b-ps protein_coding protein_coding MGP_C57BL6NJ_T0013413.1 MGP_C57BL6NJ_G0011458.1 mouse_genomes_project 15 82632692 82633067 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006986.1 MGP_C57BL6NJ_G0005757.1 mouse_genomes_project 15 109236374 109238693 - Gm28265 lincRNA lincRNA MGP_C57BL6NJ_T0041330.1 MGP_C57BL6NJ_G0022239.1 mouse_genomes_project 15 44968902 45090231 - MGP_C57BL6NJ_P0041330 Sybu protein_coding protein_coding MGP_C57BL6NJ_T0041331.1 MGP_C57BL6NJ_G0022239.1 mouse_genomes_project 15 44968902 45090231 - MGP_C57BL6NJ_P0041331 Sybu protein_coding protein_coding MGP_C57BL6NJ_T0041332.1 MGP_C57BL6NJ_G0022239.1 mouse_genomes_project 15 44968902 45049886 - MGP_C57BL6NJ_P0041332 Sybu protein_coding protein_coding MGP_C57BL6NJ_T0006966.1 MGP_C57BL6NJ_G0005743.1 mouse_genomes_project 15 97119781 97155449 + Gm26760 lincRNA lincRNA MGP_C57BL6NJ_T0042546.1 MGP_C57BL6NJ_G0022606.1 mouse_genomes_project 15 89968247 89975305 - MGP_C57BL6NJ_P0042546 Pkdrej protein_coding protein_coding MGP_C57BL6NJ_T0102178.1 MGP_C57BL6NJ_G0040196.1 mouse_genomes_project 15 60781842 60787478 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102179.1 MGP_C57BL6NJ_G0040196.1 mouse_genomes_project 15 60786317 60787395 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0042840.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103202443 103259422 - MGP_C57BL6NJ_P0042840 Vdr protein_coding protein_coding MGP_C57BL6NJ_T0042841.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103205555 103207759 - Vdr protein_coding retained_intron MGP_C57BL6NJ_T0042842.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103225105 103247738 - MGP_C57BL6NJ_P0042842 Vdr protein_coding protein_coding MGP_C57BL6NJ_T0042843.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103225177 103263366 - MGP_C57BL6NJ_P0042843 Vdr protein_coding protein_coding MGP_C57BL6NJ_T0042844.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103233307 103263366 - MGP_C57BL6NJ_P0042844 Vdr protein_coding protein_coding MGP_C57BL6NJ_T0042845.1 MGP_C57BL6NJ_G0022691.1 mouse_genomes_project 15 103233319 103260674 - MGP_C57BL6NJ_P0042845 Vdr protein_coding protein_coding MGP_C57BL6NJ_T0041294.1 MGP_C57BL6NJ_G0022221.1 mouse_genomes_project 15 39059195 39590928 + MGP_C57BL6NJ_P0041294 Rims2 protein_coding protein_coding MGP_C57BL6NJ_T0041295.1 MGP_C57BL6NJ_G0022221.1 mouse_genomes_project 15 39059226 39590752 + MGP_C57BL6NJ_P0041295 Rims2 protein_coding protein_coding MGP_C57BL6NJ_T0041296.1 MGP_C57BL6NJ_G0022221.1 mouse_genomes_project 15 39148225 39227704 + MGP_C57BL6NJ_P0041296 Rims2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041297.1 MGP_C57BL6NJ_G0022221.1 mouse_genomes_project 15 39269587 39593369 + MGP_C57BL6NJ_P0041297 Rims2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041635.1 MGP_C57BL6NJ_G0022339.1 mouse_genomes_project 15 77324043 77327760 - MGP_C57BL6NJ_P0041635 Slurp1 protein_coding protein_coding MGP_C57BL6NJ_T0041636.1 MGP_C57BL6NJ_G0022339.1 mouse_genomes_project 15 77326389 77327740 - MGP_C57BL6NJ_P0041636 Slurp1 protein_coding protein_coding MGP_C57BL6NJ_T0102860.1 MGP_C57BL6NJ_G0040654.1 mouse_genomes_project 15 36005 37838 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0042534.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89883353 89928832 + Ppara protein_coding processed_transcript MGP_C57BL6NJ_T0042535.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89883934 89955735 + MGP_C57BL6NJ_P0042535 Ppara protein_coding protein_coding MGP_C57BL6NJ_T0042536.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89884009 89928927 + Ppara protein_coding processed_transcript MGP_C57BL6NJ_T0042537.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89884146 89956391 + MGP_C57BL6NJ_P0042537 Ppara protein_coding protein_coding MGP_C57BL6NJ_T0042538.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89884501 89955320 + MGP_C57BL6NJ_P0042538 Ppara protein_coding protein_coding MGP_C57BL6NJ_T0042539.1 MGP_C57BL6NJ_G0022604.1 mouse_genomes_project 15 89923415 89928967 + Ppara protein_coding processed_transcript MGP_C57BL6NJ_T0017927.1 MGP_C57BL6NJ_G0015692.1 mouse_genomes_project 15 70476051 70478767 - Gm26621 processed_transcript TEC MGP_C57BL6NJ_T0017928.1 MGP_C57BL6NJ_G0015692.1 mouse_genomes_project 15 70476472 70478747 - Gm26621 processed_transcript processed_transcript MGP_C57BL6NJ_T0042789.1 MGP_C57BL6NJ_G0022672.1 mouse_genomes_project 15 99648219 100159369 + MGP_C57BL6NJ_P0042789 Tmem117 protein_coding protein_coding MGP_C57BL6NJ_T0041051.1 MGP_C57BL6NJ_G0022134.1 mouse_genomes_project 15 8478702 8507243 + MGP_C57BL6NJ_P0041051 Slc45a2 protein_coding protein_coding MGP_C57BL6NJ_T0042846.1 MGP_C57BL6NJ_G0022692.1 mouse_genomes_project 15 103335012 103340838 + MGP_C57BL6NJ_P0042846 Tmem106c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013405.1 MGP_C57BL6NJ_G0011450.1 mouse_genomes_project 15 77315130 77315274 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043057.1 MGP_C57BL6NJ_G0022768.1 mouse_genomes_project 15 106325977 106378047 - MGP_C57BL6NJ_P0043057 Tfcp2 protein_coding protein_coding MGP_C57BL6NJ_T0041533.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68756545 68947409 + MGP_C57BL6NJ_P0041533 Tg protein_coding protein_coding MGP_C57BL6NJ_T0041534.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68776413 68947295 + MGP_C57BL6NJ_P0041534 Tg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041535.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68790161 68803956 + Tg protein_coding processed_transcript MGP_C57BL6NJ_T0041536.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68794166 68947295 + MGP_C57BL6NJ_P0041536 Tg protein_coding protein_coding MGP_C57BL6NJ_T0041537.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68804709 68814068 + Tg protein_coding processed_transcript MGP_C57BL6NJ_T0041538.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68805351 68818450 + Tg protein_coding processed_transcript MGP_C57BL6NJ_T0041539.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68829044 68947409 + MGP_C57BL6NJ_P0041539 Tg protein_coding protein_coding MGP_C57BL6NJ_T0041545.1 MGP_C57BL6NJ_G0022312.1 mouse_genomes_project 15 68893771 68947409 + Tg protein_coding processed_transcript MGP_C57BL6NJ_T0043079.1 MGP_C57BL6NJ_G0022774.1 mouse_genomes_project 15 106536470 106574627 - MGP_C57BL6NJ_P0043079 Galnt6 protein_coding protein_coding MGP_C57BL6NJ_T0043080.1 MGP_C57BL6NJ_G0022774.1 mouse_genomes_project 15 106536472 106574627 - MGP_C57BL6NJ_P0043080 Galnt6 protein_coding protein_coding MGP_C57BL6NJ_T0043081.1 MGP_C57BL6NJ_G0022774.1 mouse_genomes_project 15 106537521 106565660 - MGP_C57BL6NJ_P0043081 Galnt6 protein_coding protein_coding MGP_C57BL6NJ_T0042805.1 MGP_C57BL6NJ_G0022681.1 mouse_genomes_project 15 101919591 101932026 - MGP_C57BL6NJ_P0042805 Slc38a2 protein_coding protein_coding MGP_C57BL6NJ_T0010306.1 MGP_C57BL6NJ_G0008391.1 mouse_genomes_project 15 107082646 107082709 + Mir6962 miRNA miRNA MGP_C57BL6NJ_T0041357.1 MGP_C57BL6NJ_G0022245.1 mouse_genomes_project 15 52914306 52949685 - MGP_C57BL6NJ_P0041357 Rad21 protein_coding protein_coding MGP_C57BL6NJ_T0017931.1 MGP_C57BL6NJ_G0015694.1 mouse_genomes_project 15 80869620 80873973 - processed_transcript retained_intron MGP_C57BL6NJ_T0042526.1 MGP_C57BL6NJ_G0022599.1 mouse_genomes_project 15 89224718 89237189 + MGP_C57BL6NJ_P0042526 Ribc2 protein_coding protein_coding MGP_C57BL6NJ_T0006952.1 MGP_C57BL6NJ_G0005733.1 mouse_genomes_project 15 83130267 83133533 - Gm26884 lincRNA lincRNA MGP_C57BL6NJ_T0041077.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 9943616 10187740 - MGP_C57BL6NJ_P0041077 Pdzd2 protein_coding protein_coding MGP_C57BL6NJ_T0041078.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 9985683 9988515 - Pdzd2 protein_coding retained_intron MGP_C57BL6NJ_T0041079.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 9992138 10001080 - Pdzd2 protein_coding retained_intron MGP_C57BL6NJ_T0041080.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 9994488 10142042 - MGP_C57BL6NJ_P0041080 Pdzd2 protein_coding protein_coding MGP_C57BL6NJ_T0041081.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10031951 10343915 - Pdzd2 protein_coding retained_intron MGP_C57BL6NJ_T0041082.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10046725 10085754 - MGP_C57BL6NJ_P0041082 Pdzd2 protein_coding protein_coding MGP_C57BL6NJ_T0041083.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10046765 10142641 - MGP_C57BL6NJ_P0041083 Pdzd2 protein_coding protein_coding MGP_C57BL6NJ_T0041084.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10115805 10142549 - Pdzd2 protein_coding processed_transcript MGP_C57BL6NJ_T0041085.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10135924 10142045 - Pdzd2 protein_coding retained_intron MGP_C57BL6NJ_T0041086.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10141826 10142996 - Pdzd2 protein_coding retained_intron MGP_C57BL6NJ_T0041087.1 MGP_C57BL6NJ_G0022144.1 mouse_genomes_project 15 10183698 10195962 - Pdzd2 protein_coding processed_transcript MGP_C57BL6NJ_T0041453.1 MGP_C57BL6NJ_G0022285.1 mouse_genomes_project 15 60340755 60386593 - MGP_C57BL6NJ_P0041453 Tatdn1 protein_coding protein_coding MGP_C57BL6NJ_T0041454.1 MGP_C57BL6NJ_G0022285.1 mouse_genomes_project 15 60351576 60386563 - MGP_C57BL6NJ_P0041454 Tatdn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102592.1 MGP_C57BL6NJ_G0040412.1 mouse_genomes_project 15 65726494 65821327 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102593.1 MGP_C57BL6NJ_G0040412.1 mouse_genomes_project 15 65727901 65821538 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102594.1 MGP_C57BL6NJ_G0040412.1 mouse_genomes_project 15 65760484 65763175 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0006909.1 MGP_C57BL6NJ_G0005706.1 mouse_genomes_project 15 8162863 8250468 + 4930556M19Rik lincRNA lincRNA MGP_C57BL6NJ_T0006928.1 MGP_C57BL6NJ_G0005721.1 mouse_genomes_project 15 43629933 43677289 - Gm10373 lincRNA lincRNA MGP_C57BL6NJ_T0041759.1 MGP_C57BL6NJ_G0022379.1 mouse_genomes_project 15 78899908 78927379 + MGP_C57BL6NJ_P0041759 protein_coding protein_coding MGP_C57BL6NJ_T0041760.1 MGP_C57BL6NJ_G0022379.1 mouse_genomes_project 15 78904638 78926858 + MGP_C57BL6NJ_P0041760 protein_coding protein_coding MGP_C57BL6NJ_T0041761.1 MGP_C57BL6NJ_G0022379.1 mouse_genomes_project 15 78926391 78929972 + protein_coding processed_transcript MGP_C57BL6NJ_T0041762.1 MGP_C57BL6NJ_G0022379.1 mouse_genomes_project 15 78927090 78938332 + protein_coding processed_transcript MGP_C57BL6NJ_T0041763.1 MGP_C57BL6NJ_G0022379.1 mouse_genomes_project 15 78928773 78930033 + protein_coding retained_intron MGP_C57BL6NJ_T0042250.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524762 84548967 + MGP_C57BL6NJ_P0042250 Adsl protein_coding protein_coding MGP_C57BL6NJ_T0042251.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524763 84547028 + MGP_C57BL6NJ_P0042251 Adsl protein_coding protein_coding MGP_C57BL6NJ_T0042252.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524776 84526379 + Adsl protein_coding retained_intron MGP_C57BL6NJ_T0042253.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524784 84547139 + MGP_C57BL6NJ_P0042253 Adsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042254.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524791 84542509 + MGP_C57BL6NJ_P0042254 Adsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042255.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524791 84546768 + MGP_C57BL6NJ_P0042255 Adsl protein_coding protein_coding MGP_C57BL6NJ_T0042256.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524809 84544143 + MGP_C57BL6NJ_P0042256 Adsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042257.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84524814 84534142 + Adsl protein_coding retained_intron MGP_C57BL6NJ_T0042258.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84525049 84530441 + MGP_C57BL6NJ_P0042258 Adsl protein_coding protein_coding MGP_C57BL6NJ_T0042259.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84539808 84542384 + Adsl protein_coding retained_intron MGP_C57BL6NJ_T0042260.1 MGP_C57BL6NJ_G0022514.1 mouse_genomes_project 15 84542462 84546775 + MGP_C57BL6NJ_P0042260 Adsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041225.1 MGP_C57BL6NJ_G0022197.1 mouse_genomes_project 15 35858115 35862425 + MGP_C57BL6NJ_P0041225 Polr2k protein_coding protein_coding MGP_C57BL6NJ_T0041226.1 MGP_C57BL6NJ_G0022197.1 mouse_genomes_project 15 35858138 35862428 + MGP_C57BL6NJ_P0041226 Polr2k protein_coding protein_coding MGP_C57BL6NJ_T0041465.1 MGP_C57BL6NJ_G0022291.1 mouse_genomes_project 15 61139317 61147414 + MGP_C57BL6NJ_P0041465 Trib1 protein_coding protein_coding MGP_C57BL6NJ_T0041466.1 MGP_C57BL6NJ_G0022291.1 mouse_genomes_project 15 61139620 61144553 + MGP_C57BL6NJ_P0041466 Trib1 protein_coding protein_coding MGP_C57BL6NJ_T0042487.1 MGP_C57BL6NJ_G0022583.1 mouse_genomes_project 15 88110700 88122603 - MGP_C57BL6NJ_P0042487 Pnpla5 protein_coding protein_coding MGP_C57BL6NJ_T0042463.1 MGP_C57BL6NJ_G0022579.1 mouse_genomes_project 15 87566531 87698501 - MGP_C57BL6NJ_P0042463 Scube1 protein_coding protein_coding MGP_C57BL6NJ_T0042464.1 MGP_C57BL6NJ_G0022579.1 mouse_genomes_project 15 87568947 87698501 - Scube1 protein_coding retained_intron MGP_C57BL6NJ_T0042465.1 MGP_C57BL6NJ_G0022579.1 mouse_genomes_project 15 87568951 87698501 - MGP_C57BL6NJ_P0042465 Scube1 protein_coding protein_coding MGP_C57BL6NJ_T0042466.1 MGP_C57BL6NJ_G0022579.1 mouse_genomes_project 15 87570454 87698501 - MGP_C57BL6NJ_P0042466 Scube1 protein_coding protein_coding MGP_C57BL6NJ_T0042467.1 MGP_C57BL6NJ_G0022579.1 mouse_genomes_project 15 87570454 87698501 - MGP_C57BL6NJ_P0042467 Scube1 protein_coding protein_coding MGP_C57BL6NJ_T0041509.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799283 67803601 + Efr3a protein_coding processed_transcript MGP_C57BL6NJ_T0041510.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799289 67895427 + MGP_C57BL6NJ_P0041510 Efr3a protein_coding protein_coding MGP_C57BL6NJ_T0041511.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799290 67803084 + Efr3a protein_coding processed_transcript MGP_C57BL6NJ_T0041512.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799290 67890868 + MGP_C57BL6NJ_P0041512 Efr3a protein_coding protein_coding MGP_C57BL6NJ_T0041513.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799291 67842018 + Efr3a protein_coding processed_transcript MGP_C57BL6NJ_T0041514.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799295 67837677 + MGP_C57BL6NJ_P0041514 Efr3a protein_coding protein_coding MGP_C57BL6NJ_T0041515.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799297 67834750 + Efr3a protein_coding retained_intron MGP_C57BL6NJ_T0041516.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67799297 67832070 + MGP_C57BL6NJ_P0041516 Efr3a protein_coding protein_coding MGP_C57BL6NJ_T0041517.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67800089 67803090 + Efr3a protein_coding processed_transcript MGP_C57BL6NJ_T0041518.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67862916 67873178 + Efr3a protein_coding retained_intron MGP_C57BL6NJ_T0041519.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67871847 67874082 + Efr3a protein_coding retained_intron MGP_C57BL6NJ_T0041520.1 MGP_C57BL6NJ_G0022305.1 mouse_genomes_project 15 67873853 67883530 + Efr3a protein_coding retained_intron MGP_C57BL6NJ_T0042088.1 MGP_C57BL6NJ_G0022471.1 mouse_genomes_project 15 82394361 82402192 + MGP_C57BL6NJ_P0042088 Gcat protein_coding protein_coding MGP_C57BL6NJ_T0042089.1 MGP_C57BL6NJ_G0022471.1 mouse_genomes_project 15 82394361 82406375 + MGP_C57BL6NJ_P0042089 Gcat protein_coding protein_coding MGP_C57BL6NJ_T0042090.1 MGP_C57BL6NJ_G0022471.1 mouse_genomes_project 15 82405728 82407402 + MGP_C57BL6NJ_P0042090 Gcat protein_coding protein_coding MGP_C57BL6NJ_T0102881.1 MGP_C57BL6NJ_G0040675.1 mouse_genomes_project 15 109963941 109966125 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102861.1 MGP_C57BL6NJ_G0040655.1 mouse_genomes_project 15 36006 37839 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041714.1 MGP_C57BL6NJ_G0022364.1 mouse_genomes_project 15 78565396 78575525 + MGP_C57BL6NJ_P0041714 Rhpn1 protein_coding protein_coding MGP_C57BL6NJ_T0041715.1 MGP_C57BL6NJ_G0022364.1 mouse_genomes_project 15 78565424 78575527 + Rhpn1 protein_coding retained_intron MGP_C57BL6NJ_T0041716.1 MGP_C57BL6NJ_G0022364.1 mouse_genomes_project 15 78565434 78575522 + Rhpn1 protein_coding retained_intron MGP_C57BL6NJ_T0041717.1 MGP_C57BL6NJ_G0022364.1 mouse_genomes_project 15 78565445 78575525 + MGP_C57BL6NJ_P0041717 Rhpn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041718.1 MGP_C57BL6NJ_G0022364.1 mouse_genomes_project 15 78565510 78575342 + MGP_C57BL6NJ_P0041718 Rhpn1 protein_coding protein_coding MGP_C57BL6NJ_T0043158.1 MGP_C57BL6NJ_G0022812.1 mouse_genomes_project 15 108097256 108125670 + MGP_C57BL6NJ_P0043158 Eif4b protein_coding protein_coding MGP_C57BL6NJ_T0041399.1 MGP_C57BL6NJ_G0022263.1 mouse_genomes_project 15 56768530 56822948 + MGP_C57BL6NJ_P0041399 Mtbp protein_coding protein_coding MGP_C57BL6NJ_T0041400.1 MGP_C57BL6NJ_G0022263.1 mouse_genomes_project 15 56768555 56842446 + MGP_C57BL6NJ_P0041400 Mtbp protein_coding protein_coding MGP_C57BL6NJ_T0041401.1 MGP_C57BL6NJ_G0022263.1 mouse_genomes_project 15 56768670 56780011 + MGP_C57BL6NJ_P0041401 Mtbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041402.1 MGP_C57BL6NJ_G0022263.1 mouse_genomes_project 15 56832795 56835147 + Mtbp protein_coding retained_intron MGP_C57BL6NJ_T0041403.1 MGP_C57BL6NJ_G0022263.1 mouse_genomes_project 15 56836660 56842438 + Mtbp protein_coding processed_transcript MGP_C57BL6NJ_T0041709.1 MGP_C57BL6NJ_G0022362.1 mouse_genomes_project 15 78476507 78485129 + MGP_C57BL6NJ_P0041709 Zfp41 protein_coding protein_coding MGP_C57BL6NJ_T0041710.1 MGP_C57BL6NJ_G0022362.1 mouse_genomes_project 15 78476512 78485122 + MGP_C57BL6NJ_P0041710 Zfp41 protein_coding protein_coding MGP_C57BL6NJ_T0041711.1 MGP_C57BL6NJ_G0022362.1 mouse_genomes_project 15 78476554 78478473 + MGP_C57BL6NJ_P0041711 Zfp41 protein_coding protein_coding MGP_C57BL6NJ_T0041712.1 MGP_C57BL6NJ_G0022362.1 mouse_genomes_project 15 78481539 78483659 + Zfp41 protein_coding processed_transcript MGP_C57BL6NJ_T0043155.1 MGP_C57BL6NJ_G0022809.1 mouse_genomes_project 15 107948627 107956506 - MGP_C57BL6NJ_P0043155 Krt78 protein_coding protein_coding MGP_C57BL6NJ_T0041404.1 MGP_C57BL6NJ_G0022264.1 mouse_genomes_project 15 56854855 57144665 - MGP_C57BL6NJ_P0041404 Sntb1 protein_coding protein_coding MGP_C57BL6NJ_T0041405.1 MGP_C57BL6NJ_G0022264.1 mouse_genomes_project 15 57014936 57144438 - MGP_C57BL6NJ_P0041405 Sntb1 protein_coding protein_coding MGP_C57BL6NJ_T0041406.1 MGP_C57BL6NJ_G0022264.1 mouse_genomes_project 15 57015910 57144026 - Sntb1 protein_coding processed_transcript MGP_C57BL6NJ_T0006957.1 MGP_C57BL6NJ_G0005737.1 mouse_genomes_project 15 86857618 86865609 + AW121686 lincRNA lincRNA MGP_C57BL6NJ_T0042674.1 MGP_C57BL6NJ_G0022642.1 mouse_genomes_project 15 93869681 93871722 + MGP_C57BL6NJ_P0042674 Klhdc7b protein_coding protein_coding MGP_C57BL6NJ_T0042390.1 MGP_C57BL6NJ_G0022551.1 mouse_genomes_project 15 86082667 86093186 - MGP_C57BL6NJ_P0042390 Naga protein_coding protein_coding MGP_C57BL6NJ_T0006948.1 MGP_C57BL6NJ_G0005729.1 mouse_genomes_project 15 77760355 77763240 - Gm28502 lincRNA lincRNA MGP_C57BL6NJ_T0042872.1 MGP_C57BL6NJ_G0022699.1 mouse_genomes_project 15 103581847 103612304 - MGP_C57BL6NJ_P0042872 protein_coding protein_coding MGP_C57BL6NJ_T0042874.1 MGP_C57BL6NJ_G0022699.1 mouse_genomes_project 15 103599877 103612202 - protein_coding processed_transcript MGP_C57BL6NJ_T0003752.1 MGP_C57BL6NJ_G0003389.1 mouse_genomes_project 15 39700434 39715619 + Gm16291 antisense antisense MGP_C57BL6NJ_T0042527.1 MGP_C57BL6NJ_G0022600.1 mouse_genomes_project 15 89294886 89388882 + MGP_C57BL6NJ_P0042527 Fbln1 protein_coding protein_coding MGP_C57BL6NJ_T0042528.1 MGP_C57BL6NJ_G0022600.1 mouse_genomes_project 15 89294942 89351173 + MGP_C57BL6NJ_P0042528 Fbln1 protein_coding protein_coding MGP_C57BL6NJ_T0042529.1 MGP_C57BL6NJ_G0022600.1 mouse_genomes_project 15 89362707 89364726 + Fbln1 protein_coding processed_transcript MGP_C57BL6NJ_T0042161.1 MGP_C57BL6NJ_G0022485.1 mouse_genomes_project 15 82905147 82926667 - MGP_C57BL6NJ_P0042161 Kcnj4 protein_coding protein_coding MGP_C57BL6NJ_T0041185.1 MGP_C57BL6NJ_G0022183.1 mouse_genomes_project 15 33849729 33992238 + MGP_C57BL6NJ_P0041185 Matn2 protein_coding protein_coding MGP_C57BL6NJ_T0041186.1 MGP_C57BL6NJ_G0022183.1 mouse_genomes_project 15 33849730 33992242 + MGP_C57BL6NJ_P0041186 Matn2 protein_coding protein_coding MGP_C57BL6NJ_T0041169.1 MGP_C57BL6NJ_G0022177.1 mouse_genomes_project 15 31734537 32200605 + MGP_C57BL6NJ_P0041169 Sema5a protein_coding protein_coding MGP_C57BL6NJ_T0101292.1 MGP_C57BL6NJ_G0039338.1 mouse_genomes_project 15 59545297 59545424 + Gm22488 snoRNA snoRNA MGP_C57BL6NJ_T0042100.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82502830 82508398 - 1700088E04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0042101.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508136 82514669 - MGP_C57BL6NJ_P0042101 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042102.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508136 82514721 - MGP_C57BL6NJ_P0042102 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042103.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508142 82514735 - MGP_C57BL6NJ_P0042103 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042104.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508473 82514712 - MGP_C57BL6NJ_P0042104 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042105.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508490 82510195 - 1700088E04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0042106.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508498 82514716 - MGP_C57BL6NJ_P0042106 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042107.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508537 82514687 - MGP_C57BL6NJ_P0042107 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042108.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82508563 82514664 - MGP_C57BL6NJ_P0042108 1700088E04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042109.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82510613 82514685 - MGP_C57BL6NJ_P0042109 1700088E04Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042110.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82510901 82512759 - MGP_C57BL6NJ_P0042110 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042111.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82510904 82514735 - MGP_C57BL6NJ_P0042111 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0042112.1 MGP_C57BL6NJ_G0022475.1 mouse_genomes_project 15 82510906 82514460 - MGP_C57BL6NJ_P0042112 1700088E04Rik protein_coding protein_coding MGP_C57BL6NJ_T0043271.1 MGP_C57BL6NJ_G0022841.1 mouse_genomes_project 15 109084589 109087906 + MGP_C57BL6NJ_P0043271 Hoxc11 protein_coding protein_coding MGP_C57BL6NJ_T0042407.1 MGP_C57BL6NJ_G0022561.1 mouse_genomes_project 15 86484884 86486503 - MGP_C57BL6NJ_P0042407 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0099975.1 MGP_C57BL6NJ_G0038021.1 mouse_genomes_project 15 54459621 54459687 + Gm27926 snRNA snRNA MGP_C57BL6NJ_T0006927.1 MGP_C57BL6NJ_G0005720.1 mouse_genomes_project 15 42851885 42885963 + Gm17473 lincRNA lincRNA MGP_C57BL6NJ_T0006924.1 MGP_C57BL6NJ_G0005717.1 mouse_genomes_project 15 38699597 38854736 - lincRNA lincRNA MGP_C57BL6NJ_T0042950.1 MGP_C57BL6NJ_G0022733.1 mouse_genomes_project 15 104691755 104785281 + MGP_C57BL6NJ_P0042950 Spats2 protein_coding protein_coding MGP_C57BL6NJ_T0041285.1 MGP_C57BL6NJ_G0022215.1 mouse_genomes_project 15 38629337 38661807 + MGP_C57BL6NJ_P0041285 Atp6v1c1 protein_coding protein_coding MGP_C57BL6NJ_T0102595.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78501957 78507272 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102596.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78502303 78504308 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102597.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78502312 78513478 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102598.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78503314 78506802 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0102599.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78504327 78506567 + unitary_pseudogene retained_intron MGP_C57BL6NJ_T0102600.1 MGP_C57BL6NJ_G0040413.1 mouse_genomes_project 15 78504491 78506320 + unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0043026.1 MGP_C57BL6NJ_G0022755.1 mouse_genomes_project 15 105662899 105718008 + MGP_C57BL6NJ_P0043026 Larp4 protein_coding protein_coding MGP_C57BL6NJ_T0043027.1 MGP_C57BL6NJ_G0022755.1 mouse_genomes_project 15 105665671 105718008 + MGP_C57BL6NJ_P0043027 Larp4 protein_coding protein_coding MGP_C57BL6NJ_T0010315.1 MGP_C57BL6NJ_G0008400.1 mouse_genomes_project 15 109104543 109104628 + Mir196a-2 miRNA miRNA MGP_C57BL6NJ_T0006983.1 MGP_C57BL6NJ_G0005754.1 mouse_genomes_project 15 108533971 108568028 - Gm26518 lincRNA lincRNA MGP_C57BL6NJ_T0042346.1 MGP_C57BL6NJ_G0022535.1 mouse_genomes_project 15 85622571 85633759 - MGP_C57BL6NJ_P0042346 Polr3h protein_coding protein_coding MGP_C57BL6NJ_T0042018.1 MGP_C57BL6NJ_G0022446.1 mouse_genomes_project 15 81395097 81409595 - MGP_C57BL6NJ_P0042018 Ift27 protein_coding protein_coding MGP_C57BL6NJ_T0010260.1 MGP_C57BL6NJ_G0008345.1 mouse_genomes_project 15 70478751 70478847 - Mir30b miRNA miRNA MGP_C57BL6NJ_T0003786.1 MGP_C57BL6NJ_G0003417.1 mouse_genomes_project 15 105430180 105448226 + Gm17058 antisense antisense MGP_C57BL6NJ_T0013391.1 MGP_C57BL6NJ_G0011436.1 mouse_genomes_project 15 41212554 41212725 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041746.1 MGP_C57BL6NJ_G0022375.1 mouse_genomes_project 15 78857305 78865811 + Zfp707 protein_coding retained_intron MGP_C57BL6NJ_T0041747.1 MGP_C57BL6NJ_G0022375.1 mouse_genomes_project 15 78857444 78865218 + MGP_C57BL6NJ_P0041747 Zfp707 protein_coding protein_coding MGP_C57BL6NJ_T0041748.1 MGP_C57BL6NJ_G0022375.1 mouse_genomes_project 15 78857454 78865687 + MGP_C57BL6NJ_P0041748 Zfp707 protein_coding protein_coding MGP_C57BL6NJ_T0041749.1 MGP_C57BL6NJ_G0022375.1 mouse_genomes_project 15 78857823 78864708 + MGP_C57BL6NJ_P0041749 Zfp707 protein_coding protein_coding MGP_C57BL6NJ_T0041750.1 MGP_C57BL6NJ_G0022375.1 mouse_genomes_project 15 78862725 78863893 + Zfp707 protein_coding retained_intron MGP_C57BL6NJ_T0041875.1 MGP_C57BL6NJ_G0022399.1 mouse_genomes_project 15 79394454 79418719 - MGP_C57BL6NJ_P0041875 Bop1 protein_coding protein_coding MGP_C57BL6NJ_T0010240.1 MGP_C57BL6NJ_G0008325.1 mouse_genomes_project 15 12514088 12514302 - Gm24080 miRNA miRNA MGP_C57BL6NJ_T0011649.1 MGP_C57BL6NJ_G0009734.1 mouse_genomes_project 15 63743695 63743894 + Gm27782 misc_RNA misc_RNA MGP_C57BL6NJ_T0041988.1 MGP_C57BL6NJ_G0022435.1 mouse_genomes_project 15 80767366 80778446 + MGP_C57BL6NJ_P0041988 Apol7c protein_coding protein_coding MGP_C57BL6NJ_T0042768.1 MGP_C57BL6NJ_G0022666.1 mouse_genomes_project 15 98272484 98385880 + MGP_C57BL6NJ_P0042768 Pphln1 protein_coding protein_coding MGP_C57BL6NJ_T0042769.1 MGP_C57BL6NJ_G0022666.1 mouse_genomes_project 15 98272484 98385880 + MGP_C57BL6NJ_P0042769 Pphln1 protein_coding protein_coding MGP_C57BL6NJ_T0042770.1 MGP_C57BL6NJ_G0022666.1 mouse_genomes_project 15 98272484 98385880 + MGP_C57BL6NJ_P0042770 Pphln1 protein_coding protein_coding MGP_C57BL6NJ_T0042771.1 MGP_C57BL6NJ_G0022666.1 mouse_genomes_project 15 98272598 98384313 + MGP_C57BL6NJ_P0042771 Pphln1 protein_coding protein_coding MGP_C57BL6NJ_T0099992.1 MGP_C57BL6NJ_G0038038.1 mouse_genomes_project 15 83561497 83561604 - Gm24204 snRNA snRNA MGP_C57BL6NJ_T0043053.1 MGP_C57BL6NJ_G0022765.1 mouse_genomes_project 15 106219209 106224657 + MGP_C57BL6NJ_P0043053 Gm5475 protein_coding protein_coding MGP_C57BL6NJ_T0043054.1 MGP_C57BL6NJ_G0022765.1 mouse_genomes_project 15 106220255 106225332 + MGP_C57BL6NJ_P0043054 Gm5475 protein_coding protein_coding MGP_C57BL6NJ_T0042410.1 MGP_C57BL6NJ_G0022564.1 mouse_genomes_project 15 86649304 86653755 - MGP_C57BL6NJ_P0042410 Cyp2d26 protein_coding protein_coding MGP_C57BL6NJ_T0042411.1 MGP_C57BL6NJ_G0022564.1 mouse_genomes_project 15 86649374 86653683 - MGP_C57BL6NJ_P0042411 Cyp2d26 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041630.1 MGP_C57BL6NJ_G0022335.1 mouse_genomes_project 15 77264696 77268182 - MGP_C57BL6NJ_P0041630 Arc protein_coding protein_coding MGP_C57BL6NJ_T0041631.1 MGP_C57BL6NJ_G0022335.1 mouse_genomes_project 15 77264696 77268184 - MGP_C57BL6NJ_P0041631 Arc protein_coding protein_coding MGP_C57BL6NJ_T0099019.1 MGP_C57BL6NJ_G0037083.1 mouse_genomes_project 15 39010943 39011051 - n-R5s39 rRNA rRNA MGP_C57BL6NJ_T0042793.1 MGP_C57BL6NJ_G0022675.1 mouse_genomes_project 15 100933761 100937548 - MGP_C57BL6NJ_P0042793 A130051J06Rik protein_coding protein_coding MGP_C57BL6NJ_T0042359.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85709599 85733287 - MGP_C57BL6NJ_P0042359 Desi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042360.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85709599 85733297 - MGP_C57BL6NJ_P0042360 Desi1 protein_coding protein_coding MGP_C57BL6NJ_T0042361.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85710923 85733359 - MGP_C57BL6NJ_P0042361 Desi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042362.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85711721 85751044 - Desi1 protein_coding processed_transcript MGP_C57BL6NJ_T0042363.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85711734 85733145 - MGP_C57BL6NJ_P0042363 Desi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042364.1 MGP_C57BL6NJ_G0022539.1 mouse_genomes_project 15 85711797 85733171 - MGP_C57BL6NJ_P0042364 Desi1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041275.1 MGP_C57BL6NJ_G0022211.1 mouse_genomes_project 15 37872436 37987538 - MGP_C57BL6NJ_P0041275 Ubr5 protein_coding protein_coding MGP_C57BL6NJ_T0041276.1 MGP_C57BL6NJ_G0022211.1 mouse_genomes_project 15 37873401 37987155 - MGP_C57BL6NJ_P0041276 Ubr5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043144.1 MGP_C57BL6NJ_G0022799.1 mouse_genomes_project 15 107716135 107725295 - MGP_C57BL6NJ_P0043144 Krt71 protein_coding protein_coding MGP_C57BL6NJ_T0010299.1 MGP_C57BL6NJ_G0008384.1 mouse_genomes_project 15 93641692 93641765 - Mir6958 miRNA miRNA MGP_C57BL6NJ_T0041334.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48133220 49467238 - MGP_C57BL6NJ_P0041334 Csmd3 protein_coding protein_coding MGP_C57BL6NJ_T0041335.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48133221 49467294 - MGP_C57BL6NJ_P0041335 Csmd3 protein_coding protein_coding MGP_C57BL6NJ_T0041336.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48133305 49467368 - MGP_C57BL6NJ_P0041336 Csmd3 protein_coding protein_coding MGP_C57BL6NJ_T0041337.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48134306 48598428 - MGP_C57BL6NJ_P0041337 Csmd3 protein_coding protein_coding MGP_C57BL6NJ_T0041338.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48134309 48170526 - Csmd3 protein_coding retained_intron MGP_C57BL6NJ_T0041339.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48135034 48870970 - MGP_C57BL6NJ_P0041339 Csmd3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041340.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48189559 48195466 - Csmd3 protein_coding retained_intron MGP_C57BL6NJ_T0041341.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48541554 48555583 - Csmd3 protein_coding retained_intron MGP_C57BL6NJ_T0041342.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48869992 49467294 - Csmd3 protein_coding processed_transcript MGP_C57BL6NJ_T0041343.1 MGP_C57BL6NJ_G0022241.1 mouse_genomes_project 15 48901845 49467294 - Csmd3 protein_coding retained_intron MGP_C57BL6NJ_T0041358.1 MGP_C57BL6NJ_G0022246.1 mouse_genomes_project 15 52996639 53002455 + MGP_C57BL6NJ_P0041358 Aard protein_coding protein_coding MGP_C57BL6NJ_T0010295.1 MGP_C57BL6NJ_G0008380.1 mouse_genomes_project 15 89842429 89842514 + Mirlet7b miRNA miRNA MGP_C57BL6NJ_T0041721.1 MGP_C57BL6NJ_G0022367.1 mouse_genomes_project 15 78738744 78743810 + MGP_C57BL6NJ_P0041721 Gsdmd protein_coding protein_coding MGP_C57BL6NJ_T0100005.1 MGP_C57BL6NJ_G0038051.1 mouse_genomes_project 15 105626776 105626911 - Gm23133 snRNA snRNA MGP_C57BL6NJ_T0043015.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105395038 105436729 - MGP_C57BL6NJ_P0043015 Cers5 protein_coding protein_coding MGP_C57BL6NJ_T0043016.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105395468 105436732 - MGP_C57BL6NJ_P0043016 Cers5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043017.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105395749 105436868 - MGP_C57BL6NJ_P0043017 Cers5 protein_coding protein_coding MGP_C57BL6NJ_T0043018.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105397613 105408616 - MGP_C57BL6NJ_P0043018 Cers5 protein_coding protein_coding MGP_C57BL6NJ_T0043019.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105399730 105437152 - MGP_C57BL6NJ_P0043019 Cers5 protein_coding protein_coding MGP_C57BL6NJ_T0043020.1 MGP_C57BL6NJ_G0022752.1 mouse_genomes_project 15 105406264 105436359 - MGP_C57BL6NJ_P0043020 Cers5 protein_coding protein_coding MGP_C57BL6NJ_T0102862.1 MGP_C57BL6NJ_G0040656.1 mouse_genomes_project 15 36008 37823 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041586.1 MGP_C57BL6NJ_G0022326.1 mouse_genomes_project 15 75946865 75947360 - MGP_C57BL6NJ_P0041586 protein_coding protein_coding MGP_C57BL6NJ_T0042566.1 MGP_C57BL6NJ_G0022612.1 mouse_genomes_project 15 90318955 90378130 - MGP_C57BL6NJ_P0042566 Cerk protein_coding protein_coding MGP_C57BL6NJ_T0042567.1 MGP_C57BL6NJ_G0022612.1 mouse_genomes_project 15 90318960 90346093 - Cerk protein_coding retained_intron MGP_C57BL6NJ_T0042457.1 MGP_C57BL6NJ_G0022575.1 mouse_genomes_project 15 87483696 87503816 + MGP_C57BL6NJ_P0042457 Bik protein_coding protein_coding MGP_C57BL6NJ_T0042261.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555937 84590113 + MGP_C57BL6NJ_P0042261 Sgsm3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042262.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555944 84595714 + MGP_C57BL6NJ_P0042262 Sgsm3 protein_coding protein_coding MGP_C57BL6NJ_T0042263.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555957 84595922 + Sgsm3 protein_coding processed_transcript MGP_C57BL6NJ_T0042264.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555978 84586087 + Sgsm3 protein_coding processed_transcript MGP_C57BL6NJ_T0042265.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555978 84590095 + MGP_C57BL6NJ_P0042265 Sgsm3 protein_coding protein_coding MGP_C57BL6NJ_T0042266.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84555995 84586087 + Sgsm3 protein_coding processed_transcript MGP_C57BL6NJ_T0042268.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84591535 84593583 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0042269.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84591956 84594169 + MGP_C57BL6NJ_P0042269 Sgsm3 protein_coding protein_coding MGP_C57BL6NJ_T0042270.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84592847 84593932 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0042271.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84593490 84595522 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0042272.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84594267 84595389 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0042273.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84594357 84595374 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0042274.1 MGP_C57BL6NJ_G0022515.1 mouse_genomes_project 15 84594509 84595268 + Sgsm3 protein_coding retained_intron MGP_C57BL6NJ_T0041531.1 MGP_C57BL6NJ_G0022310.1 mouse_genomes_project 15 68604734 68641733 - MGP_C57BL6NJ_P0041531 Tmem71 protein_coding protein_coding MGP_C57BL6NJ_T0042052.1 MGP_C57BL6NJ_G0022459.1 mouse_genomes_project 15 81911303 81936279 + MGP_C57BL6NJ_P0042052 Cyth4 protein_coding protein_coding MGP_C57BL6NJ_T0010259.1 MGP_C57BL6NJ_G0008344.1 mouse_genomes_project 15 64355128 64355198 - Gm24810 miRNA miRNA MGP_C57BL6NJ_T0011656.1 MGP_C57BL6NJ_G0009741.1 mouse_genomes_project 15 96326824 96327110 - Gm25389 misc_RNA misc_RNA MGP_C57BL6NJ_T0041306.1 MGP_C57BL6NJ_G0022225.1 mouse_genomes_project 15 40092074 40098564 + MGP_C57BL6NJ_P0041306 9330182O14Rik protein_coding protein_coding MGP_C57BL6NJ_T0042718.1 MGP_C57BL6NJ_G0022653.1 mouse_genomes_project 15 94780284 94786528 + MGP_C57BL6NJ_P0042718 Alg10b protein_coding protein_coding MGP_C57BL6NJ_T0042944.1 MGP_C57BL6NJ_G0022729.1 mouse_genomes_project 15 104605383 104609233 + MGP_C57BL6NJ_P0042944 Prph protein_coding protein_coding MGP_C57BL6NJ_T0042945.1 MGP_C57BL6NJ_G0022729.1 mouse_genomes_project 15 104605383 104609233 + MGP_C57BL6NJ_P0042945 Prph protein_coding protein_coding MGP_C57BL6NJ_T0013420.1 MGP_C57BL6NJ_G0011465.1 mouse_genomes_project 15 95142016 95142499 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041580.1 MGP_C57BL6NJ_G0022323.1 mouse_genomes_project 15 75589205 75592891 + MGP_C57BL6NJ_P0041580 Chrac1 protein_coding protein_coding MGP_C57BL6NJ_T0041581.1 MGP_C57BL6NJ_G0022323.1 mouse_genomes_project 15 75589205 75596370 + MGP_C57BL6NJ_P0041581 Chrac1 protein_coding protein_coding MGP_C57BL6NJ_T0041582.1 MGP_C57BL6NJ_G0022323.1 mouse_genomes_project 15 75589225 75593590 + Chrac1 protein_coding retained_intron MGP_C57BL6NJ_T0003795.1 MGP_C57BL6NJ_G0003425.1 mouse_genomes_project 15 109236327 109239158 + Gm10830 antisense antisense MGP_C57BL6NJ_T0042053.1 MGP_C57BL6NJ_G0022460.1 mouse_genomes_project 15 81985389 82033310 - MGP_C57BL6NJ_P0042053 Elfn2 protein_coding protein_coding MGP_C57BL6NJ_T0041278.1 MGP_C57BL6NJ_G0022213.1 mouse_genomes_project 15 38234674 38241422 - MGP_C57BL6NJ_P0041278 Klf10 protein_coding protein_coding MGP_C57BL6NJ_T0010252.1 MGP_C57BL6NJ_G0008337.1 mouse_genomes_project 15 38158499 38158608 + Gm24098 miRNA miRNA MGP_C57BL6NJ_T0041333.1 MGP_C57BL6NJ_G0022240.1 mouse_genomes_project 15 45422422 45425667 - MGP_C57BL6NJ_P0041333 protein_coding protein_coding MGP_C57BL6NJ_T0043069.1 MGP_C57BL6NJ_G0022771.1 mouse_genomes_project 15 106458255 106474009 - MGP_C57BL6NJ_P0043069 Smagp protein_coding protein_coding MGP_C57BL6NJ_T0043070.1 MGP_C57BL6NJ_G0022771.1 mouse_genomes_project 15 106458255 106473999 - MGP_C57BL6NJ_P0043070 Smagp protein_coding protein_coding MGP_C57BL6NJ_T0042486.1 MGP_C57BL6NJ_G0022582.1 mouse_genomes_project 15 88073604 88103834 - MGP_C57BL6NJ_P0042486 Sult4a1 protein_coding protein_coding MGP_C57BL6NJ_T0042698.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94003433 94074916 + MGP_C57BL6NJ_P0042698 Shank3 protein_coding protein_coding MGP_C57BL6NJ_T0042699.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94003592 94074916 + MGP_C57BL6NJ_P0042699 Shank3 protein_coding protein_coding MGP_C57BL6NJ_T0042700.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94003858 94007157 + Shank3 protein_coding processed_transcript MGP_C57BL6NJ_T0042701.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94005018 94074914 + MGP_C57BL6NJ_P0042701 Shank3 protein_coding protein_coding MGP_C57BL6NJ_T0042702.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94029615 94046216 + Shank3 protein_coding processed_transcript MGP_C57BL6NJ_T0042703.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94042617 94044230 + Shank3 protein_coding processed_transcript MGP_C57BL6NJ_T0042704.1 MGP_C57BL6NJ_G0022649.1 mouse_genomes_project 15 94044711 94055811 + MGP_C57BL6NJ_P0042704 Shank3 protein_coding protein_coding MGP_C57BL6NJ_T0099965.1 MGP_C57BL6NJ_G0038011.1 mouse_genomes_project 15 35890443 35890506 + Gm23754 snRNA snRNA MGP_C57BL6NJ_T0041982.1 MGP_C57BL6NJ_G0022431.1 mouse_genomes_project 15 80538407 80632289 + MGP_C57BL6NJ_P0041982 protein_coding protein_coding MGP_C57BL6NJ_T0041984.1 MGP_C57BL6NJ_G0022431.1 mouse_genomes_project 15 80602677 80632317 + MGP_C57BL6NJ_P0041984 protein_coding protein_coding MGP_C57BL6NJ_T0013419.1 MGP_C57BL6NJ_G0011464.1 mouse_genomes_project 15 89625676 89626084 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043157.1 MGP_C57BL6NJ_G0022811.1 mouse_genomes_project 15 108036610 108048166 + MGP_C57BL6NJ_P0043157 Krt18 protein_coding protein_coding MGP_C57BL6NJ_T0041773.1 MGP_C57BL6NJ_G0022383.1 mouse_genomes_project 15 79013227 79020307 - MGP_C57BL6NJ_P0041773 BC024139 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041774.1 MGP_C57BL6NJ_G0022383.1 mouse_genomes_project 15 79013230 79020253 - MGP_C57BL6NJ_P0041774 BC024139 protein_coding protein_coding MGP_C57BL6NJ_T0041775.1 MGP_C57BL6NJ_G0022383.1 mouse_genomes_project 15 79013231 79020267 - MGP_C57BL6NJ_P0041775 BC024139 protein_coding protein_coding MGP_C57BL6NJ_T0041776.1 MGP_C57BL6NJ_G0022383.1 mouse_genomes_project 15 79016519 79019782 - BC024139 protein_coding processed_transcript MGP_C57BL6NJ_T0043181.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108271033 108296322 - MGP_C57BL6NJ_P0043181 Rarg protein_coding protein_coding MGP_C57BL6NJ_T0043182.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108271035 108285281 - MGP_C57BL6NJ_P0043182 Rarg protein_coding protein_coding MGP_C57BL6NJ_T0043183.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108277446 108296154 - MGP_C57BL6NJ_P0043183 Rarg protein_coding protein_coding MGP_C57BL6NJ_T0043184.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108280731 108282382 - Rarg protein_coding processed_transcript MGP_C57BL6NJ_T0043185.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108280735 108284012 - Rarg protein_coding processed_transcript MGP_C57BL6NJ_T0043186.1 MGP_C57BL6NJ_G0022820.1 mouse_genomes_project 15 108280735 108289151 - Rarg protein_coding processed_transcript MGP_C57BL6NJ_T0042459.1 MGP_C57BL6NJ_G0022577.1 mouse_genomes_project 15 87524574 87536445 + MGP_C57BL6NJ_P0042459 Tspo protein_coding protein_coding MGP_C57BL6NJ_T0041530.1 MGP_C57BL6NJ_G0022309.1 mouse_genomes_project 15 68443331 68577838 - MGP_C57BL6NJ_P0041530 Lrrc6 protein_coding protein_coding MGP_C57BL6NJ_T0099022.1 MGP_C57BL6NJ_G0037086.1 mouse_genomes_project 15 91458484 91458588 + n-R5s42 rRNA rRNA MGP_C57BL6NJ_T0041891.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522615 79547494 + MGP_C57BL6NJ_P0041891 Adck5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041892.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522635 79547502 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041893.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522661 79543509 + Adck5 protein_coding processed_transcript MGP_C57BL6NJ_T0041894.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522668 79547495 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041895.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522669 79541411 + Adck5 protein_coding processed_transcript MGP_C57BL6NJ_T0041896.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522730 79547336 + MGP_C57BL6NJ_P0041896 Adck5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041897.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79522739 79547485 + MGP_C57BL6NJ_P0041897 Adck5 protein_coding protein_coding MGP_C57BL6NJ_T0041898.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79545123 79545856 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041899.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79545586 79546842 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041900.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79545853 79546874 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041901.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79545978 79547502 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041902.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79546507 79546849 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041903.1 MGP_C57BL6NJ_G0022406.1 mouse_genomes_project 15 79546649 79547402 + Adck5 protein_coding retained_intron MGP_C57BL6NJ_T0041174.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603229 33624412 + Mtdh protein_coding retained_intron MGP_C57BL6NJ_T0041175.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603254 33673887 + MGP_C57BL6NJ_P0041175 Mtdh protein_coding protein_coding MGP_C57BL6NJ_T0041176.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603260 33652734 + Mtdh protein_coding retained_intron MGP_C57BL6NJ_T0041177.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603571 33665845 + MGP_C57BL6NJ_P0041177 Mtdh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041178.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603843 33668281 + MGP_C57BL6NJ_P0041178 Mtdh protein_coding protein_coding MGP_C57BL6NJ_T0041179.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603854 33668312 + MGP_C57BL6NJ_P0041179 Mtdh protein_coding protein_coding MGP_C57BL6NJ_T0041180.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33603857 33652132 + MGP_C57BL6NJ_P0041180 Mtdh protein_coding protein_coding MGP_C57BL6NJ_T0041181.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33604388 33646395 + Mtdh protein_coding processed_transcript MGP_C57BL6NJ_T0041182.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33643339 33672211 + MGP_C57BL6NJ_P0041182 Mtdh protein_coding protein_coding MGP_C57BL6NJ_T0041183.1 MGP_C57BL6NJ_G0022181.1 mouse_genomes_project 15 33664421 33672784 + Mtdh protein_coding processed_transcript MGP_C57BL6NJ_T0010280.1 MGP_C57BL6NJ_G0008365.1 mouse_genomes_project 15 85250685 85250739 + Gm23880 miRNA miRNA MGP_C57BL6NJ_T0042929.1 MGP_C57BL6NJ_G0022724.1 mouse_genomes_project 15 104340226 104381459 - MGP_C57BL6NJ_P0042929 Kmt2d protein_coding protein_coding MGP_C57BL6NJ_T0042930.1 MGP_C57BL6NJ_G0022724.1 mouse_genomes_project 15 104340229 104381530 - MGP_C57BL6NJ_P0042930 Kmt2d protein_coding protein_coding MGP_C57BL6NJ_T0042931.1 MGP_C57BL6NJ_G0022724.1 mouse_genomes_project 15 104342865 104345686 - MGP_C57BL6NJ_P0042931 Kmt2d protein_coding protein_coding MGP_C57BL6NJ_T0042932.1 MGP_C57BL6NJ_G0022724.1 mouse_genomes_project 15 104363332 104364928 - MGP_C57BL6NJ_P0042932 Kmt2d protein_coding protein_coding MGP_C57BL6NJ_T0100004.1 MGP_C57BL6NJ_G0038050.1 mouse_genomes_project 15 105471654 105471761 - Gm25897 snRNA snRNA MGP_C57BL6NJ_T0043315.1 MGP_C57BL6NJ_G0022859.1 mouse_genomes_project 15 109682086 109708830 + MGP_C57BL6NJ_P0043315 Pde1b protein_coding protein_coding MGP_C57BL6NJ_T0042222.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83545221 83556547 - protein_coding retained_intron MGP_C57BL6NJ_T0042223.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83545222 83557317 - protein_coding retained_intron MGP_C57BL6NJ_T0042224.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83545223 83557317 - MGP_C57BL6NJ_P0042224 protein_coding protein_coding MGP_C57BL6NJ_T0042225.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83548373 83557297 - MGP_C57BL6NJ_P0042225 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042226.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83548852 83567643 - MGP_C57BL6NJ_P0042226 protein_coding protein_coding MGP_C57BL6NJ_T0042227.1 MGP_C57BL6NJ_G0022502.1 mouse_genomes_project 15 83549939 83557301 - protein_coding retained_intron MGP_C57BL6NJ_T0010237.1 MGP_C57BL6NJ_G0008322.1 mouse_genomes_project 15 2930016 2930130 + Gm27760 miRNA miRNA MGP_C57BL6NJ_T0099017.1 MGP_C57BL6NJ_G0037081.1 mouse_genomes_project 15 29940747 29940866 + Gm23956 rRNA rRNA MGP_C57BL6NJ_T0042248.1 MGP_C57BL6NJ_G0022513.1 mouse_genomes_project 15 84265847 84515486 + MGP_C57BL6NJ_P0042248 Tnrc6b protein_coding protein_coding MGP_C57BL6NJ_T0042249.1 MGP_C57BL6NJ_G0022513.1 mouse_genomes_project 15 84319742 84498865 + MGP_C57BL6NJ_P0042249 Tnrc6b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041658.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589279 77594134 + MGP_C57BL6NJ_P0041658 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041659.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589279 77594132 + MGP_C57BL6NJ_P0041659 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041660.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589299 77594134 + MGP_C57BL6NJ_P0041660 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041661.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589334 77593005 + MGP_C57BL6NJ_P0041661 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041662.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589370 77592618 + MGP_C57BL6NJ_P0041662 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041663.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589392 77592985 + MGP_C57BL6NJ_P0041663 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041664.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589406 77592884 + MGP_C57BL6NJ_P0041664 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041665.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589414 77592956 + MGP_C57BL6NJ_P0041665 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041666.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589469 77592822 + MGP_C57BL6NJ_P0041666 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041667.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589488 77592889 + MGP_C57BL6NJ_P0041667 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041668.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589881 77593560 + MGP_C57BL6NJ_P0041668 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041669.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589894 77593258 + Ly6e protein_coding retained_intron MGP_C57BL6NJ_T0041670.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589896 77593560 + Ly6e protein_coding retained_intron MGP_C57BL6NJ_T0041671.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589900 77592839 + MGP_C57BL6NJ_P0041671 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041672.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77589911 77590726 + Ly6e protein_coding retained_intron MGP_C57BL6NJ_T0041673.1 MGP_C57BL6NJ_G0022351.1 mouse_genomes_project 15 77590783 77593055 + MGP_C57BL6NJ_P0041673 Ly6e protein_coding protein_coding MGP_C57BL6NJ_T0041235.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36327410 36340817 - MGP_C57BL6NJ_P0041235 Pabpc1 protein_coding protein_coding MGP_C57BL6NJ_T0041236.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36327657 36329787 - MGP_C57BL6NJ_P0041236 Pabpc1 protein_coding protein_coding MGP_C57BL6NJ_T0041237.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36327791 36330080 - Pabpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041238.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36327791 36329194 - Pabpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041239.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36327968 36329504 - Pabpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041240.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36330068 36334114 - Pabpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041241.1 MGP_C57BL6NJ_G0022203.1 mouse_genomes_project 15 36335263 36340817 - Pabpc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041089.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10434632 10546627 + MGP_C57BL6NJ_P0041089 Drosha protein_coding protein_coding MGP_C57BL6NJ_T0041090.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10434680 10546580 + MGP_C57BL6NJ_P0041090 Drosha protein_coding protein_coding MGP_C57BL6NJ_T0041091.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10434707 10442112 + Drosha protein_coding processed_transcript MGP_C57BL6NJ_T0041092.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10434707 10442112 + Drosha protein_coding processed_transcript MGP_C57BL6NJ_T0041093.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10435944 10442030 + Drosha protein_coding processed_transcript MGP_C57BL6NJ_T0041094.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10441319 10546459 + MGP_C57BL6NJ_P0041094 Drosha protein_coding protein_coding MGP_C57BL6NJ_T0041095.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10444840 10516860 + Drosha protein_coding retained_intron MGP_C57BL6NJ_T0041096.1 MGP_C57BL6NJ_G0022146.1 mouse_genomes_project 15 10491093 10497616 + Drosha protein_coding processed_transcript MGP_C57BL6NJ_T0011641.1 MGP_C57BL6NJ_G0009726.1 mouse_genomes_project 15 3628919 3629195 + Gm23218 misc_RNA misc_RNA MGP_C57BL6NJ_T0043133.1 MGP_C57BL6NJ_G0022788.1 mouse_genomes_project 15 107385867 107392294 - MGP_C57BL6NJ_P0043133 Krt81 protein_coding protein_coding MGP_C57BL6NJ_T0010287.1 MGP_C57BL6NJ_G0008372.1 mouse_genomes_project 15 86453556 86453616 - Gm27742 miRNA miRNA MGP_C57BL6NJ_T0042607.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93551184 93577448 - MGP_C57BL6NJ_P0042607 Tubgcp6 protein_coding protein_coding MGP_C57BL6NJ_T0042608.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93551925 93553926 - Tubgcp6 protein_coding retained_intron MGP_C57BL6NJ_T0042609.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553237 93577247 - MGP_C57BL6NJ_P0042609 Tubgcp6 protein_coding protein_coding MGP_C57BL6NJ_T0042610.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553237 93555431 - MGP_C57BL6NJ_P0042610 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042611.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553261 93554371 - Tubgcp6 protein_coding retained_intron MGP_C57BL6NJ_T0042612.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553520 93554107 - Tubgcp6 protein_coding retained_intron MGP_C57BL6NJ_T0042613.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553544 93554842 - MGP_C57BL6NJ_P0042613 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042614.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93553839 93555008 - Tubgcp6 protein_coding retained_intron MGP_C57BL6NJ_T0042615.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93554303 93555200 - MGP_C57BL6NJ_P0042615 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042616.1 MGP_C57BL6NJ_G0022627.1 mouse_genomes_project 15 93557043 93560257 - MGP_C57BL6NJ_P0042616 Tubgcp6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0017937.1 MGP_C57BL6NJ_G0015699.1 mouse_genomes_project 15 93523885 93527004 - 1810021B22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017938.1 MGP_C57BL6NJ_G0015699.1 mouse_genomes_project 15 93523885 93527900 - 1810021B22Rik processed_transcript antisense MGP_C57BL6NJ_T0017939.1 MGP_C57BL6NJ_G0015699.1 mouse_genomes_project 15 93523887 93527900 - 1810021B22Rik processed_transcript antisense MGP_C57BL6NJ_T0017940.1 MGP_C57BL6NJ_G0015699.1 mouse_genomes_project 15 93523887 93528603 - 1810021B22Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017941.1 MGP_C57BL6NJ_G0015699.1 mouse_genomes_project 15 93523887 93527962 - 1810021B22Rik processed_transcript antisense MGP_C57BL6NJ_T0010316.1 MGP_C57BL6NJ_G0008401.1 mouse_genomes_project 15 109146041 109146133 + Mir615 miRNA miRNA MGP_C57BL6NJ_T0042893.1 MGP_C57BL6NJ_G0022709.1 mouse_genomes_project 15 103926111 103934660 + MGP_C57BL6NJ_P0042893 Olfr279 protein_coding protein_coding MGP_C57BL6NJ_T0042894.1 MGP_C57BL6NJ_G0022709.1 mouse_genomes_project 15 103933727 103934660 + MGP_C57BL6NJ_P0042894 Olfr279 protein_coding protein_coding MGP_C57BL6NJ_T0042439.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87026975 87052151 - MGP_C57BL6NJ_P0042439 Poldip3 protein_coding protein_coding MGP_C57BL6NJ_T0042440.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87026975 87052204 - MGP_C57BL6NJ_P0042440 Poldip3 protein_coding protein_coding MGP_C57BL6NJ_T0042441.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87034206 87052121 - MGP_C57BL6NJ_P0042441 Poldip3 protein_coding protein_coding MGP_C57BL6NJ_T0042442.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87034301 87036948 - Poldip3 protein_coding retained_intron MGP_C57BL6NJ_T0042443.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87036724 87052149 - Poldip3 protein_coding retained_intron MGP_C57BL6NJ_T0042444.1 MGP_C57BL6NJ_G0022569.1 mouse_genomes_project 15 87038864 87052156 - Poldip3 protein_coding retained_intron MGP_C57BL6NJ_T0041969.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80055892 80066657 + MGP_C57BL6NJ_P0041969 Apol6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041970.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80056238 80062707 + MGP_C57BL6NJ_P0041970 Apol6 protein_coding protein_coding MGP_C57BL6NJ_T0041971.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80056439 80067466 + MGP_C57BL6NJ_P0041971 Apol6 protein_coding protein_coding MGP_C57BL6NJ_T0041972.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80056441 80061679 + MGP_C57BL6NJ_P0041972 Apol6 protein_coding protein_coding MGP_C57BL6NJ_T0041973.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80056650 80057402 + Apol6 protein_coding processed_transcript MGP_C57BL6NJ_T0041974.1 MGP_C57BL6NJ_G0022427.1 mouse_genomes_project 15 80063109 80066403 + Apol6 protein_coding processed_transcript MGP_C57BL6NJ_T0006921.1 MGP_C57BL6NJ_G0005714.1 mouse_genomes_project 15 38163080 38171025 - lincRNA lincRNA MGP_C57BL6NJ_T0102866.1 MGP_C57BL6NJ_G0040660.1 mouse_genomes_project 15 77586614 77586765 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010271.1 MGP_C57BL6NJ_G0008356.1 mouse_genomes_project 15 82239044 82239118 + Mir6955 miRNA miRNA MGP_C57BL6NJ_T0042051.1 MGP_C57BL6NJ_G0022458.1 mouse_genomes_project 15 81862770 81882498 - MGP_C57BL6NJ_P0042051 Rac2 protein_coding protein_coding MGP_C57BL6NJ_T0013406.1 MGP_C57BL6NJ_G0011451.1 mouse_genomes_project 15 78618720 78711649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010251.1 MGP_C57BL6NJ_G0008336.1 mouse_genomes_project 15 37229175 37229301 - Gm23654 miRNA miRNA MGP_C57BL6NJ_T0010288.1 MGP_C57BL6NJ_G0008373.1 mouse_genomes_project 15 86489350 86489407 - Gm27463 miRNA miRNA MGP_C57BL6NJ_T0041307.1 MGP_C57BL6NJ_G0022226.1 mouse_genomes_project 15 40632588 41135156 + MGP_C57BL6NJ_P0041307 Zfpm2 protein_coding protein_coding MGP_C57BL6NJ_T0042569.1 MGP_C57BL6NJ_G0022614.1 mouse_genomes_project 15 91930079 92069388 + MGP_C57BL6NJ_P0042569 Fam19a5 protein_coding protein_coding MGP_C57BL6NJ_T0010289.1 MGP_C57BL6NJ_G0008374.1 mouse_genomes_project 15 86641279 86641339 - Gm27618 miRNA miRNA MGP_C57BL6NJ_T0099962.1 MGP_C57BL6NJ_G0038008.1 mouse_genomes_project 15 29954777 29954840 + Gm24487 snRNA snRNA MGP_C57BL6NJ_T0013425.1 MGP_C57BL6NJ_G0011470.1 mouse_genomes_project 15 105479028 105479444 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041412.1 MGP_C57BL6NJ_G0022267.1 mouse_genomes_project 15 59054043 59208992 + MGP_C57BL6NJ_P0041412 Zhx2 protein_coding protein_coding MGP_C57BL6NJ_T0041413.1 MGP_C57BL6NJ_G0022267.1 mouse_genomes_project 15 59056787 59187975 + Zhx2 protein_coding processed_transcript MGP_C57BL6NJ_T0099955.1 MGP_C57BL6NJ_G0038001.1 mouse_genomes_project 15 2016137 2016240 + Gm25652 snRNA snRNA MGP_C57BL6NJ_T0041857.1 MGP_C57BL6NJ_G0022397.1 mouse_genomes_project 15 79311697 79314678 - MGP_C57BL6NJ_P0041857 Tssk5 protein_coding protein_coding MGP_C57BL6NJ_T0043124.1 MGP_C57BL6NJ_G0022784.1 mouse_genomes_project 15 107254279 107274841 - MGP_C57BL6NJ_P0043124 Krt80 protein_coding protein_coding MGP_C57BL6NJ_T0011650.1 MGP_C57BL6NJ_G0009735.1 mouse_genomes_project 15 63775534 63775620 + Gm27718 misc_RNA misc_RNA MGP_C57BL6NJ_T0003753.1 MGP_C57BL6NJ_G0003390.1 mouse_genomes_project 15 56644651 56647557 - 1700040F17Rik antisense antisense MGP_C57BL6NJ_T0042004.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81126100 81126754 - Txn2 protein_coding processed_transcript MGP_C57BL6NJ_T0042005.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81126100 81140083 - MGP_C57BL6NJ_P0042005 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042006.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81126100 81138922 - MGP_C57BL6NJ_P0042006 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042007.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81126257 81138805 - MGP_C57BL6NJ_P0042007 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042008.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81126263 81140045 - MGP_C57BL6NJ_P0042008 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042009.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81130575 81138812 - MGP_C57BL6NJ_P0042009 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042010.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81134320 81140051 - MGP_C57BL6NJ_P0042010 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0042011.1 MGP_C57BL6NJ_G0022442.1 mouse_genomes_project 15 81137474 81140074 - MGP_C57BL6NJ_P0042011 Txn2 protein_coding protein_coding MGP_C57BL6NJ_T0011658.1 MGP_C57BL6NJ_G0009743.1 mouse_genomes_project 15 103293382 103293693 + Gm22202 misc_RNA misc_RNA MGP_C57BL6NJ_T0042127.1 MGP_C57BL6NJ_G0022479.1 mouse_genomes_project 15 82627987 82631733 - MGP_C57BL6NJ_P0042127 Slc16a8 protein_coding protein_coding MGP_C57BL6NJ_T0043282.1 MGP_C57BL6NJ_G0022847.1 mouse_genomes_project 15 109150064 109168058 + MGP_C57BL6NJ_P0043282 Hoxc4 protein_coding protein_coding MGP_C57BL6NJ_T0043283.1 MGP_C57BL6NJ_G0022847.1 mouse_genomes_project 15 109166047 109168505 + MGP_C57BL6NJ_P0043283 Hoxc4 protein_coding protein_coding MGP_C57BL6NJ_T0042228.1 MGP_C57BL6NJ_G0022503.1 mouse_genomes_project 15 83567108 83592842 + MGP_C57BL6NJ_P0042228 Syngr1 protein_coding protein_coding MGP_C57BL6NJ_T0042229.1 MGP_C57BL6NJ_G0022503.1 mouse_genomes_project 15 83567118 83598902 + MGP_C57BL6NJ_P0042229 Syngr1 protein_coding protein_coding MGP_C57BL6NJ_T0042230.1 MGP_C57BL6NJ_G0022503.1 mouse_genomes_project 15 83575588 83591063 + MGP_C57BL6NJ_P0042230 Syngr1 protein_coding protein_coding MGP_C57BL6NJ_T0042231.1 MGP_C57BL6NJ_G0022503.1 mouse_genomes_project 15 83594873 83595666 + MGP_C57BL6NJ_P0042231 Syngr1 protein_coding protein_coding MGP_C57BL6NJ_T0043135.1 MGP_C57BL6NJ_G0022790.1 mouse_genomes_project 15 107421845 107431192 - MGP_C57BL6NJ_P0043135 Krt83 protein_coding protein_coding MGP_C57BL6NJ_T0013392.1 MGP_C57BL6NJ_G0011437.1 mouse_genomes_project 15 43413911 43414923 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042297.1 MGP_C57BL6NJ_G0022524.1 mouse_genomes_project 15 85135927 85139483 - MGP_C57BL6NJ_P0042297 Gm5218 protein_coding protein_coding MGP_C57BL6NJ_T0043131.1 MGP_C57BL6NJ_G0022786.1 mouse_genomes_project 15 107341835 107350636 - MGP_C57BL6NJ_P0043131 Krt87 protein_coding protein_coding MGP_C57BL6NJ_T0042598.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93527874 93538105 + MGP_C57BL6NJ_P0042598 Trabd protein_coding protein_coding MGP_C57BL6NJ_T0042599.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93528763 93539873 + MGP_C57BL6NJ_P0042599 Trabd protein_coding protein_coding MGP_C57BL6NJ_T0042600.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93528822 93539867 + MGP_C57BL6NJ_P0042600 Trabd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042601.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93528844 93538926 + MGP_C57BL6NJ_P0042601 Trabd protein_coding protein_coding MGP_C57BL6NJ_T0042602.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93528874 93538929 + MGP_C57BL6NJ_P0042602 Trabd protein_coding protein_coding MGP_C57BL6NJ_T0042603.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93535324 93539867 + Trabd protein_coding retained_intron MGP_C57BL6NJ_T0042604.1 MGP_C57BL6NJ_G0022625.1 mouse_genomes_project 15 93537504 93538420 + Trabd protein_coding retained_intron MGP_C57BL6NJ_T0043132.1 MGP_C57BL6NJ_G0022787.1 mouse_genomes_project 15 107374555 107380716 + MGP_C57BL6NJ_P0043132 Krt88 protein_coding protein_coding MGP_C57BL6NJ_T0041965.1 MGP_C57BL6NJ_G0022425.1 mouse_genomes_project 15 79944998 79947196 + MGP_C57BL6NJ_P0041965 1110038F14Rik protein_coding protein_coding MGP_C57BL6NJ_T0042627.1 MGP_C57BL6NJ_G0022631.1 mouse_genomes_project 15 93611599 93636912 - MGP_C57BL6NJ_P0042627 Plxnb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042628.1 MGP_C57BL6NJ_G0022631.1 mouse_genomes_project 15 93611603 93612634 - Plxnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0042629.1 MGP_C57BL6NJ_G0022631.1 mouse_genomes_project 15 93612035 93613299 - Plxnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0042630.1 MGP_C57BL6NJ_G0022631.1 mouse_genomes_project 15 93617121 93617658 - Plxnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0042631.1 MGP_C57BL6NJ_G0022631.1 mouse_genomes_project 15 93621001 93621908 - Plxnb2 protein_coding processed_transcript MGP_C57BL6NJ_T0099986.1 MGP_C57BL6NJ_G0038032.1 mouse_genomes_project 15 75199465 75199532 - Gm28020 snRNA snRNA MGP_C57BL6NJ_T0099980.1 MGP_C57BL6NJ_G0038026.1 mouse_genomes_project 15 61610565 61610672 + Gm25875 snRNA snRNA MGP_C57BL6NJ_T0041479.1 MGP_C57BL6NJ_G0022297.1 mouse_genomes_project 15 65603172 65798342 - MGP_C57BL6NJ_P0041479 protein_coding protein_coding MGP_C57BL6NJ_T0041480.1 MGP_C57BL6NJ_G0022297.1 mouse_genomes_project 15 65603172 65789015 - MGP_C57BL6NJ_P0041480 protein_coding protein_coding MGP_C57BL6NJ_T0041485.1 MGP_C57BL6NJ_G0022297.1 mouse_genomes_project 15 65603308 65770087 - MGP_C57BL6NJ_P0041485 protein_coding protein_coding MGP_C57BL6NJ_T0041820.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79254750 79258427 + MGP_C57BL6NJ_P0041820 Gpaa1 protein_coding protein_coding MGP_C57BL6NJ_T0041821.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79254863 79258418 + MGP_C57BL6NJ_P0041821 Gpaa1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041822.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79254864 79258423 + MGP_C57BL6NJ_P0041822 Gpaa1 protein_coding protein_coding MGP_C57BL6NJ_T0041823.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79254869 79256334 + Gpaa1 protein_coding retained_intron MGP_C57BL6NJ_T0041824.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79255032 79256006 + MGP_C57BL6NJ_P0041824 Gpaa1 protein_coding protein_coding MGP_C57BL6NJ_T0041825.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79255518 79256441 + MGP_C57BL6NJ_P0041825 Gpaa1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041826.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79255742 79257137 + Gpaa1 protein_coding retained_intron MGP_C57BL6NJ_T0041827.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79256046 79256767 + MGP_C57BL6NJ_P0041827 Gpaa1 protein_coding protein_coding MGP_C57BL6NJ_T0041828.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79256688 79257813 + Gpaa1 protein_coding retained_intron MGP_C57BL6NJ_T0041829.1 MGP_C57BL6NJ_G0022391.1 mouse_genomes_project 15 79257250 79257818 + Gpaa1 protein_coding retained_intron MGP_C57BL6NJ_T0101285.1 MGP_C57BL6NJ_G0039331.1 mouse_genomes_project 15 44623739 44623865 + Gm24903 snoRNA snoRNA MGP_C57BL6NJ_T0011662.1 MGP_C57BL6NJ_G0009747.1 mouse_genomes_project 15 109077740 109077838 + Gm27443 misc_RNA misc_RNA MGP_C57BL6NJ_T0041053.1 MGP_C57BL6NJ_G0022136.1 mouse_genomes_project 15 8543142 8846237 + MGP_C57BL6NJ_P0041053 Adamts12 protein_coding protein_coding MGP_C57BL6NJ_T0003788.1 MGP_C57BL6NJ_G0003419.1 mouse_genomes_project 15 105621180 105641729 + Gm21917 antisense antisense MGP_C57BL6NJ_T0003789.1 MGP_C57BL6NJ_G0003419.1 mouse_genomes_project 15 105621180 105623166 + Gm21917 antisense antisense MGP_C57BL6NJ_T0041323.1 MGP_C57BL6NJ_G0022235.1 mouse_genomes_project 15 44657021 44709539 - MGP_C57BL6NJ_P0041323 Nudcd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041324.1 MGP_C57BL6NJ_G0022235.1 mouse_genomes_project 15 44657024 44710070 - MGP_C57BL6NJ_P0041324 Nudcd1 protein_coding protein_coding MGP_C57BL6NJ_T0102428.1 MGP_C57BL6NJ_G0040338.1 mouse_genomes_project 15 77876902 77880654 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102429.1 MGP_C57BL6NJ_G0040338.1 mouse_genomes_project 15 77877200 77880350 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0040896.1 MGP_C57BL6NJ_G0022091.1 mouse_genomes_project 15 980026 1126062 + MGP_C57BL6NJ_P0040896 Oxct1 protein_coding protein_coding MGP_C57BL6NJ_T0040897.1 MGP_C57BL6NJ_G0022091.1 mouse_genomes_project 15 980327 1124681 + MGP_C57BL6NJ_P0040897 Oxct1 protein_coding protein_coding MGP_C57BL6NJ_T0040898.1 MGP_C57BL6NJ_G0022091.1 mouse_genomes_project 15 1001492 1048521 + Oxct1 protein_coding processed_transcript MGP_C57BL6NJ_T0040899.1 MGP_C57BL6NJ_G0022091.1 mouse_genomes_project 15 1111724 1124698 + Oxct1 protein_coding processed_transcript MGP_C57BL6NJ_T0040900.1 MGP_C57BL6NJ_G0022091.1 mouse_genomes_project 15 1112013 1124677 + Oxct1 protein_coding processed_transcript MGP_C57BL6NJ_T0040903.1 MGP_C57BL6NJ_G0022093.1 mouse_genomes_project 15 1699237 1762590 + MGP_C57BL6NJ_P0040903 C6 protein_coding protein_coding MGP_C57BL6NJ_T0040904.1 MGP_C57BL6NJ_G0022093.1 mouse_genomes_project 15 1699278 1727165 + MGP_C57BL6NJ_P0040904 C6 protein_coding protein_coding MGP_C57BL6NJ_T0040905.1 MGP_C57BL6NJ_G0022093.1 mouse_genomes_project 15 1699278 1762225 + MGP_C57BL6NJ_P0040905 C6 protein_coding protein_coding MGP_C57BL6NJ_T0040906.1 MGP_C57BL6NJ_G0022093.1 mouse_genomes_project 15 1699346 1774030 + MGP_C57BL6NJ_P0040906 C6 protein_coding protein_coding MGP_C57BL6NJ_T0040907.1 MGP_C57BL6NJ_G0022093.1 mouse_genomes_project 15 1732955 1750244 + C6 protein_coding processed_transcript MGP_C57BL6NJ_T0010265.1 MGP_C57BL6NJ_G0008350.1 mouse_genomes_project 15 79124953 79125016 - Mir1942 miRNA miRNA MGP_C57BL6NJ_T0042795.1 MGP_C57BL6NJ_G0022677.1 mouse_genomes_project 15 100974407 100979973 - MGP_C57BL6NJ_P0042795 Gm17546 protein_coding protein_coding MGP_C57BL6NJ_T0102879.1 MGP_C57BL6NJ_G0040673.1 mouse_genomes_project 15 103900171 103905686 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0001076.1 MGP_C57BL6NJ_G0000985.1 mouse_genomes_project 15 97261988 97264874 + TEC TEC MGP_C57BL6NJ_T0041692.1 MGP_C57BL6NJ_G0022357.1 mouse_genomes_project 15 77991788 77997347 + MGP_C57BL6NJ_P0041692 BC025446 protein_coding protein_coding MGP_C57BL6NJ_T0041693.1 MGP_C57BL6NJ_G0022357.1 mouse_genomes_project 15 77992008 77998058 + MGP_C57BL6NJ_P0041693 BC025446 protein_coding protein_coding MGP_C57BL6NJ_T0101274.1 MGP_C57BL6NJ_G0039320.1 mouse_genomes_project 15 29320997 29321075 - Gm23327 snoRNA snoRNA MGP_C57BL6NJ_T0003787.1 MGP_C57BL6NJ_G0003418.1 mouse_genomes_project 15 105489982 105506343 + Gm17057 antisense antisense MGP_C57BL6NJ_T0040895.1 MGP_C57BL6NJ_G0022090.1 mouse_genomes_project 15 934746 948453 - MGP_C57BL6NJ_P0040895 AW549877 protein_coding protein_coding MGP_C57BL6NJ_T0041905.1 MGP_C57BL6NJ_G0022408.1 mouse_genomes_project 15 79565203 79569671 - MGP_C57BL6NJ_P0041905 Slc39a4 protein_coding protein_coding MGP_C57BL6NJ_T0099991.1 MGP_C57BL6NJ_G0038037.1 mouse_genomes_project 15 81043393 81043493 - Gm22107 snRNA snRNA MGP_C57BL6NJ_T0042221.1 MGP_C57BL6NJ_G0022501.1 mouse_genomes_project 15 83458720 83477606 - MGP_C57BL6NJ_P0042221 Pdgfb protein_coding protein_coding MGP_C57BL6NJ_T0042246.1 MGP_C57BL6NJ_G0022511.1 mouse_genomes_project 15 84173999 84203281 + MGP_C57BL6NJ_P0042246 Grap2 protein_coding protein_coding MGP_C57BL6NJ_T0042741.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571238 96594387 + MGP_C57BL6NJ_P0042741 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042742.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571301 96594756 + MGP_C57BL6NJ_P0042742 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042743.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571301 96594757 + MGP_C57BL6NJ_P0042743 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042744.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571301 96594757 + MGP_C57BL6NJ_P0042744 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042745.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571309 96578509 + MGP_C57BL6NJ_P0042745 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042746.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96571310 96588747 + Smgc protein_coding processed_transcript MGP_C57BL6NJ_T0042747.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96574391 96594758 + MGP_C57BL6NJ_P0042747 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042748.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96578423 96594760 + MGP_C57BL6NJ_P0042748 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0042749.1 MGP_C57BL6NJ_G0022660.1 mouse_genomes_project 15 96580579 96594760 + MGP_C57BL6NJ_P0042749 Smgc protein_coding protein_coding MGP_C57BL6NJ_T0041170.1 MGP_C57BL6NJ_G0022178.1 mouse_genomes_project 15 32403517 32540070 + MGP_C57BL6NJ_P0041170 Sdc2 protein_coding protein_coding MGP_C57BL6NJ_T0041171.1 MGP_C57BL6NJ_G0022178.1 mouse_genomes_project 15 32403564 32404091 + Sdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0101272.1 MGP_C57BL6NJ_G0039318.1 mouse_genomes_project 15 29189601 29189735 - Gm23033 snoRNA snoRNA MGP_C57BL6NJ_T0100008.1 MGP_C57BL6NJ_G0038054.1 mouse_genomes_project 15 108722835 108722942 - Gm25141 snRNA snRNA MGP_C57BL6NJ_T0099964.1 MGP_C57BL6NJ_G0038010.1 mouse_genomes_project 15 35855067 35855226 + Gm22979 snRNA snRNA MGP_C57BL6NJ_T0042190.1 MGP_C57BL6NJ_G0022497.1 mouse_genomes_project 15 83236645 83284320 - MGP_C57BL6NJ_P0042190 Npcd protein_coding protein_coding MGP_C57BL6NJ_T0042191.1 MGP_C57BL6NJ_G0022497.1 mouse_genomes_project 15 83236645 83284320 - MGP_C57BL6NJ_P0042191 Npcd protein_coding protein_coding MGP_C57BL6NJ_T0041088.1 MGP_C57BL6NJ_G0022145.1 mouse_genomes_project 15 10417976 10434475 - MGP_C57BL6NJ_P0041088 6030458C11Rik protein_coding protein_coding MGP_C57BL6NJ_T0013384.1 MGP_C57BL6NJ_G0011429.1 mouse_genomes_project 15 35804918 35805847 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042908.1 MGP_C57BL6NJ_G0022714.1 mouse_genomes_project 15 104098191 104110638 + MGP_C57BL6NJ_P0042908 Cacnb3 protein_coding protein_coding MGP_C57BL6NJ_T0042909.1 MGP_C57BL6NJ_G0022714.1 mouse_genomes_project 15 104100782 104110638 + MGP_C57BL6NJ_P0042909 Cacnb3 protein_coding protein_coding MGP_C57BL6NJ_T0040953.1 MGP_C57BL6NJ_G0022107.1 mouse_genomes_project 15 4301836 4367659 + MGP_C57BL6NJ_P0040953 Lifr protein_coding protein_coding MGP_C57BL6NJ_T0040954.1 MGP_C57BL6NJ_G0022107.1 mouse_genomes_project 15 4301849 4361251 + MGP_C57BL6NJ_P0040954 Lifr protein_coding protein_coding MGP_C57BL6NJ_T0040955.1 MGP_C57BL6NJ_G0022107.1 mouse_genomes_project 15 4329986 4373395 + MGP_C57BL6NJ_P0040955 Lifr protein_coding protein_coding MGP_C57BL6NJ_T0043276.1 MGP_C57BL6NJ_G0022845.1 mouse_genomes_project 15 109121709 109124924 + MGP_C57BL6NJ_P0043276 Hoxc8 protein_coding protein_coding MGP_C57BL6NJ_T0043277.1 MGP_C57BL6NJ_G0022845.1 mouse_genomes_project 15 109122991 109125214 + Hoxc8 protein_coding retained_intron MGP_C57BL6NJ_T0041648.1 MGP_C57BL6NJ_G0022346.1 mouse_genomes_project 15 77424026 77428042 - MGP_C57BL6NJ_P0041648 protein_coding protein_coding MGP_C57BL6NJ_T0041649.1 MGP_C57BL6NJ_G0022346.1 mouse_genomes_project 15 77424028 77429457 - MGP_C57BL6NJ_P0041649 protein_coding protein_coding MGP_C57BL6NJ_T0041653.1 MGP_C57BL6NJ_G0022346.1 mouse_genomes_project 15 77424386 77429455 - MGP_C57BL6NJ_P0041653 protein_coding protein_coding MGP_C57BL6NJ_T0041992.1 MGP_C57BL6NJ_G0022438.1 mouse_genomes_project 15 80895359 80906696 + MGP_C57BL6NJ_P0041992 Apol9a protein_coding protein_coding MGP_C57BL6NJ_T0041994.1 MGP_C57BL6NJ_G0022438.1 mouse_genomes_project 15 80895405 80906696 + MGP_C57BL6NJ_P0041994 Apol9a protein_coding protein_coding MGP_C57BL6NJ_T0013408.1 MGP_C57BL6NJ_G0011453.1 mouse_genomes_project 15 78855435 78856711 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017933.1 MGP_C57BL6NJ_G0015696.1 mouse_genomes_project 15 82720725 82722085 + Gm20420 processed_transcript processed_transcript MGP_C57BL6NJ_T0006923.1 MGP_C57BL6NJ_G0005716.1 mouse_genomes_project 15 38508833 38557696 - 2310043O21Rik lincRNA lincRNA MGP_C57BL6NJ_T0042382.1 MGP_C57BL6NJ_G0022546.1 mouse_genomes_project 15 85958952 85963072 - MGP_C57BL6NJ_P0042382 protein_coding protein_coding MGP_C57BL6NJ_T0041540.1 MGP_C57BL6NJ_G0022313.1 mouse_genomes_project 15 68875848 68927343 - MGP_C57BL6NJ_P0041540 Sla protein_coding protein_coding MGP_C57BL6NJ_T0041541.1 MGP_C57BL6NJ_G0022313.1 mouse_genomes_project 15 68875893 68907458 - MGP_C57BL6NJ_P0041541 Sla protein_coding protein_coding MGP_C57BL6NJ_T0041542.1 MGP_C57BL6NJ_G0022313.1 mouse_genomes_project 15 68877107 68896615 - MGP_C57BL6NJ_P0041542 Sla protein_coding protein_coding MGP_C57BL6NJ_T0041543.1 MGP_C57BL6NJ_G0022313.1 mouse_genomes_project 15 68877571 68927526 - MGP_C57BL6NJ_P0041543 Sla protein_coding protein_coding MGP_C57BL6NJ_T0041544.1 MGP_C57BL6NJ_G0022313.1 mouse_genomes_project 15 68880749 68898771 - Sla protein_coding retained_intron MGP_C57BL6NJ_T0041320.1 MGP_C57BL6NJ_G0022233.1 mouse_genomes_project 15 44107260 44110753 - MGP_C57BL6NJ_P0041320 Tmem74 protein_coding protein_coding MGP_C57BL6NJ_T0042927.1 MGP_C57BL6NJ_G0022722.1 mouse_genomes_project 15 104306574 104311682 - MGP_C57BL6NJ_P0042927 Ddn protein_coding protein_coding MGP_C57BL6NJ_T0006964.1 MGP_C57BL6NJ_G0005741.1 mouse_genomes_project 15 93686117 93689620 - Gm26798 lincRNA lincRNA MGP_C57BL6NJ_T0101279.1 MGP_C57BL6NJ_G0039325.1 mouse_genomes_project 15 33828579 33828631 - Gm25809 snoRNA snoRNA MGP_C57BL6NJ_T0010308.1 MGP_C57BL6NJ_G0008393.1 mouse_genomes_project 15 107524558 107524696 + Gm44393 miRNA miRNA MGP_C57BL6NJ_T0102878.1 MGP_C57BL6NJ_G0040672.1 mouse_genomes_project 15 86637128 86641308 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013409.1 MGP_C57BL6NJ_G0011454.1 mouse_genomes_project 15 79765178 79765533 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040935.1 MGP_C57BL6NJ_G0022103.1 mouse_genomes_project 15 3570403 3626978 + MGP_C57BL6NJ_P0040935 C9 protein_coding protein_coding MGP_C57BL6NJ_T0040936.1 MGP_C57BL6NJ_G0022103.1 mouse_genomes_project 15 3570448 3594587 + MGP_C57BL6NJ_P0040936 C9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040937.1 MGP_C57BL6NJ_G0022103.1 mouse_genomes_project 15 3617714 3619657 + C9 protein_coding retained_intron MGP_C57BL6NJ_T0040938.1 MGP_C57BL6NJ_G0022103.1 mouse_genomes_project 15 3618152 3626971 + MGP_C57BL6NJ_P0040938 C9 protein_coding protein_coding MGP_C57BL6NJ_T0043225.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108584696 108604522 - MGP_C57BL6NJ_P0043225 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043226.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108585823 108597740 - MGP_C57BL6NJ_P0043226 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043227.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108586072 108604750 - MGP_C57BL6NJ_P0043227 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043229.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108592417 108604690 - MGP_C57BL6NJ_P0043229 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043230.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108592479 108604661 - MGP_C57BL6NJ_P0043230 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043231.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108592516 108604502 - MGP_C57BL6NJ_P0043231 Map3k12 protein_coding protein_coding MGP_C57BL6NJ_T0043232.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108593165 108604498 - Map3k12 protein_coding processed_transcript MGP_C57BL6NJ_T0043233.1 MGP_C57BL6NJ_G0022831.1 mouse_genomes_project 15 108596151 108597832 - Map3k12 protein_coding processed_transcript MGP_C57BL6NJ_T0043107.1 MGP_C57BL6NJ_G0022777.1 mouse_genomes_project 15 106922595 106928403 - MGP_C57BL6NJ_P0043107 Fignl2 protein_coding protein_coding MGP_C57BL6NJ_T0042237.1 MGP_C57BL6NJ_G0022508.1 mouse_genomes_project 15 83771307 83775000 - MGP_C57BL6NJ_P0042237 Rps19bp1 protein_coding protein_coding MGP_C57BL6NJ_T0099346.1 MGP_C57BL6NJ_G0037406.1 mouse_genomes_project 15 37650451 37652991 - Gm15940 sense_intronic sense_intronic MGP_C57BL6NJ_T0041369.1 MGP_C57BL6NJ_G0022251.1 mouse_genomes_project 15 54987959 54989651 + MGP_C57BL6NJ_P0041369 Gm7489 protein_coding protein_coding MGP_C57BL6NJ_T0006962.1 MGP_C57BL6NJ_G0005739.1 mouse_genomes_project 15 89703581 89716148 + AU022754 lincRNA lincRNA MGP_C57BL6NJ_T0099985.1 MGP_C57BL6NJ_G0038031.1 mouse_genomes_project 15 74943756 74943818 - Gm24390 snRNA snRNA MGP_C57BL6NJ_T0042058.1 MGP_C57BL6NJ_G0022462.1 mouse_genomes_project 15 82103145 82130041 - MGP_C57BL6NJ_P0042058 Card10 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042059.1 MGP_C57BL6NJ_G0022462.1 mouse_genomes_project 15 82103156 82130468 - MGP_C57BL6NJ_P0042059 Card10 protein_coding protein_coding MGP_C57BL6NJ_T0042060.1 MGP_C57BL6NJ_G0022462.1 mouse_genomes_project 15 82104093 82130095 - MGP_C57BL6NJ_P0042060 Card10 protein_coding protein_coding MGP_C57BL6NJ_T0042061.1 MGP_C57BL6NJ_G0022462.1 mouse_genomes_project 15 82114945 82118032 - Card10 protein_coding processed_transcript MGP_C57BL6NJ_T0041227.1 MGP_C57BL6NJ_G0022198.1 mouse_genomes_project 15 35864707 35920329 + MGP_C57BL6NJ_P0041227 Spag1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042405.1 MGP_C57BL6NJ_G0022559.1 mouse_genomes_project 15 86393297 86397603 + MGP_C57BL6NJ_P0042405 Cyp2d12 protein_coding protein_coding MGP_C57BL6NJ_T0013407.1 MGP_C57BL6NJ_G0011452.1 mouse_genomes_project 15 78731224 78732634 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042163.1 MGP_C57BL6NJ_G0022487.1 mouse_genomes_project 15 82950749 82971128 - MGP_C57BL6NJ_P0042163 Ddx17 protein_coding protein_coding MGP_C57BL6NJ_T0041986.1 MGP_C57BL6NJ_G0022433.1 mouse_genomes_project 15 80674915 80683140 - MGP_C57BL6NJ_P0041986 1700025B11Rik protein_coding protein_coding MGP_C57BL6NJ_T0099345.1 MGP_C57BL6NJ_G0037405.1 mouse_genomes_project 15 37075869 37076629 + Gm16137 sense_intronic sense_intronic MGP_C57BL6NJ_T0042234.1 MGP_C57BL6NJ_G0022506.1 mouse_genomes_project 15 83744605 83764060 + MGP_C57BL6NJ_P0042234 Mief1 protein_coding protein_coding MGP_C57BL6NJ_T0042235.1 MGP_C57BL6NJ_G0022506.1 mouse_genomes_project 15 83744633 83761259 + MGP_C57BL6NJ_P0042235 Mief1 protein_coding protein_coding MGP_C57BL6NJ_T0043274.1 MGP_C57BL6NJ_G0022844.1 mouse_genomes_project 15 109107632 109112860 + MGP_C57BL6NJ_P0043274 Hoxc9 protein_coding protein_coding MGP_C57BL6NJ_T0043275.1 MGP_C57BL6NJ_G0022844.1 mouse_genomes_project 15 109108225 109116356 + MGP_C57BL6NJ_P0043275 Hoxc9 protein_coding protein_coding MGP_C57BL6NJ_T0101301.1 MGP_C57BL6NJ_G0039347.1 mouse_genomes_project 15 83552884 83552978 - Snord83b snoRNA snoRNA MGP_C57BL6NJ_T0041594.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76111547 76140580 - MGP_C57BL6NJ_P0041594 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041595.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76111557 76161365 - MGP_C57BL6NJ_P0041595 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041596.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76114423 76152423 - MGP_C57BL6NJ_P0041596 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041597.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76114423 76140566 - MGP_C57BL6NJ_P0041597 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041598.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76114426 76161365 - MGP_C57BL6NJ_P0041598 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041599.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76121024 76123093 - MGP_C57BL6NJ_P0041599 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041600.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76140691 76185429 - MGP_C57BL6NJ_P0041600 Slc45a4 protein_coding protein_coding MGP_C57BL6NJ_T0041601.1 MGP_C57BL6NJ_G0022328.1 mouse_genomes_project 15 76141046 76183361 - Slc45a4 protein_coding processed_transcript MGP_C57BL6NJ_T0041915.1 MGP_C57BL6NJ_G0022410.1 mouse_genomes_project 15 79597712 79618086 - MGP_C57BL6NJ_P0041915 Cyhr1 protein_coding protein_coding MGP_C57BL6NJ_T0041916.1 MGP_C57BL6NJ_G0022410.1 mouse_genomes_project 15 79601244 79613644 - MGP_C57BL6NJ_P0041916 Cyhr1 protein_coding protein_coding MGP_C57BL6NJ_T0041917.1 MGP_C57BL6NJ_G0022410.1 mouse_genomes_project 15 79601655 79613440 - MGP_C57BL6NJ_P0041917 Cyhr1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041918.1 MGP_C57BL6NJ_G0022410.1 mouse_genomes_project 15 79614863 79618142 - MGP_C57BL6NJ_P0041918 Cyhr1 protein_coding protein_coding MGP_C57BL6NJ_T0041919.1 MGP_C57BL6NJ_G0022410.1 mouse_genomes_project 15 79614867 79618133 - MGP_C57BL6NJ_P0041919 Cyhr1 protein_coding protein_coding MGP_C57BL6NJ_T0010239.1 MGP_C57BL6NJ_G0008324.1 mouse_genomes_project 15 10449583 10449723 + miRNA miRNA MGP_C57BL6NJ_T0041248.1 MGP_C57BL6NJ_G0022206.1 mouse_genomes_project 15 36808332 36819595 - MGP_C57BL6NJ_P0041248 Zfp706 protein_coding protein_coding MGP_C57BL6NJ_T0042655.1 MGP_C57BL6NJ_G0022637.1 mouse_genomes_project 15 93830266 93834922 - MGP_C57BL6NJ_P0042655 Lmf2 protein_coding protein_coding MGP_C57BL6NJ_T0042488.1 MGP_C57BL6NJ_G0022584.1 mouse_genomes_project 15 88169244 88194108 + MGP_C57BL6NJ_P0042488 Pnpla3 protein_coding protein_coding MGP_C57BL6NJ_T0042670.1 MGP_C57BL6NJ_G0022640.1 mouse_genomes_project 15 93852943 93859898 - MGP_C57BL6NJ_P0042670 Tymp protein_coding protein_coding MGP_C57BL6NJ_T0042671.1 MGP_C57BL6NJ_G0022640.1 mouse_genomes_project 15 93854457 93859607 - MGP_C57BL6NJ_P0042671 Tymp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042779.1 MGP_C57BL6NJ_G0022669.1 mouse_genomes_project 15 99501302 99523941 - MGP_C57BL6NJ_P0042779 Pus7l protein_coding protein_coding MGP_C57BL6NJ_T0042780.1 MGP_C57BL6NJ_G0022669.1 mouse_genomes_project 15 99516316 99523887 - Pus7l protein_coding retained_intron MGP_C57BL6NJ_T0042781.1 MGP_C57BL6NJ_G0022669.1 mouse_genomes_project 15 99521004 99523880 - MGP_C57BL6NJ_P0042781 Pus7l protein_coding protein_coding MGP_C57BL6NJ_T0043228.1 MGP_C57BL6NJ_G0022832.1 mouse_genomes_project 15 108590769 108590934 + MGP_C57BL6NJ_P0043228 Gm10337 protein_coding protein_coding MGP_C57BL6NJ_T0099971.1 MGP_C57BL6NJ_G0038017.1 mouse_genomes_project 15 49205690 49205823 + Gm25007 snRNA snRNA MGP_C57BL6NJ_T0042403.1 MGP_C57BL6NJ_G0022557.1 mouse_genomes_project 15 86165119 86170193 - MGP_C57BL6NJ_P0042403 protein_coding protein_coding MGP_C57BL6NJ_T0042454.1 MGP_C57BL6NJ_G0022574.1 mouse_genomes_project 15 87438612 87467727 - MGP_C57BL6NJ_P0042454 Ttll1 protein_coding protein_coding MGP_C57BL6NJ_T0042455.1 MGP_C57BL6NJ_G0022574.1 mouse_genomes_project 15 87459496 87467629 - MGP_C57BL6NJ_P0042455 Ttll1 protein_coding protein_coding MGP_C57BL6NJ_T0042456.1 MGP_C57BL6NJ_G0022574.1 mouse_genomes_project 15 87462668 87467719 - Ttll1 protein_coding processed_transcript MGP_C57BL6NJ_T0042325.1 MGP_C57BL6NJ_G0022529.1 mouse_genomes_project 15 85432509 85495015 + MGP_C57BL6NJ_P0042325 Zc3h7b protein_coding protein_coding MGP_C57BL6NJ_T0041206.1 MGP_C57BL6NJ_G0022190.1 mouse_genomes_project 15 34430431 34435388 + MGP_C57BL6NJ_P0041206 Kcns2 protein_coding protein_coding MGP_C57BL6NJ_T0043139.1 MGP_C57BL6NJ_G0022794.1 mouse_genomes_project 15 107532484 107543044 - MGP_C57BL6NJ_P0043139 Krt75 protein_coding protein_coding MGP_C57BL6NJ_T0013387.1 MGP_C57BL6NJ_G0011432.1 mouse_genomes_project 15 37286566 37288013 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042933.1 MGP_C57BL6NJ_G0022725.1 mouse_genomes_project 15 104388129 104391797 - MGP_C57BL6NJ_P0042933 Rhebl1 protein_coding protein_coding MGP_C57BL6NJ_T0042934.1 MGP_C57BL6NJ_G0022725.1 mouse_genomes_project 15 104388397 104391483 - Rhebl1 protein_coding processed_transcript MGP_C57BL6NJ_T0042935.1 MGP_C57BL6NJ_G0022725.1 mouse_genomes_project 15 104389884 104391139 - Rhebl1 protein_coding retained_intron MGP_C57BL6NJ_T0011643.1 MGP_C57BL6NJ_G0009728.1 mouse_genomes_project 15 9517558 9517818 + Gm24074 misc_RNA misc_RNA MGP_C57BL6NJ_T0010294.1 MGP_C57BL6NJ_G0008379.1 mouse_genomes_project 15 89841713 89841808 + Mirlet7c-2 miRNA miRNA MGP_C57BL6NJ_T0013371.1 MGP_C57BL6NJ_G0011416.1 mouse_genomes_project 15 5807940 5808240 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041856.1 MGP_C57BL6NJ_G0022396.1 mouse_genomes_project 15 79308636 79311142 + MGP_C57BL6NJ_P0041856 Hgh1 protein_coding protein_coding MGP_C57BL6NJ_T0043301.1 MGP_C57BL6NJ_G0022853.1 mouse_genomes_project 15 109457958 109460161 - MGP_C57BL6NJ_P0043301 Gpr84 protein_coding protein_coding MGP_C57BL6NJ_T0042347.1 MGP_C57BL6NJ_G0022536.1 mouse_genomes_project 15 85645839 85661767 + MGP_C57BL6NJ_P0042347 Csdc2 protein_coding protein_coding MGP_C57BL6NJ_T0042348.1 MGP_C57BL6NJ_G0022536.1 mouse_genomes_project 15 85646062 85657695 + MGP_C57BL6NJ_P0042348 Csdc2 protein_coding protein_coding MGP_C57BL6NJ_T0042349.1 MGP_C57BL6NJ_G0022536.1 mouse_genomes_project 15 85656556 85657713 + Csdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0042350.1 MGP_C57BL6NJ_G0022536.1 mouse_genomes_project 15 85657786 85661760 + Csdc2 protein_coding retained_intron MGP_C57BL6NJ_T0102869.1 MGP_C57BL6NJ_G0040663.1 mouse_genomes_project 15 77969316 77973080 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0042954.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900229 104912156 + MGP_C57BL6NJ_P0042954 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042955.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900381 104923322 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042956.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900383 104922418 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042957.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900383 104922418 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042958.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900386 104913268 + MGP_C57BL6NJ_P0042958 Prpf40b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042959.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104900413 104923322 + MGP_C57BL6NJ_P0042959 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042960.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104902085 104923314 + MGP_C57BL6NJ_P0042960 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042961.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104909473 104922803 + MGP_C57BL6NJ_P0042961 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042962.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104909474 104923311 + MGP_C57BL6NJ_P0042962 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042963.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104914075 104921397 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042964.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104916093 104922194 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042965.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104921171 104922098 + Prpf40b protein_coding retained_intron MGP_C57BL6NJ_T0042966.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104921180 104922975 + MGP_C57BL6NJ_P0042966 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042967.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104921209 104923117 + MGP_C57BL6NJ_P0042967 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0042968.1 MGP_C57BL6NJ_G0022737.1 mouse_genomes_project 15 104921843 104923314 + MGP_C57BL6NJ_P0042968 Prpf40b protein_coding protein_coding MGP_C57BL6NJ_T0041007.1 MGP_C57BL6NJ_G0022123.1 mouse_genomes_project 15 6914194 7112044 - MGP_C57BL6NJ_P0041007 protein_coding protein_coding MGP_C57BL6NJ_T0041008.1 MGP_C57BL6NJ_G0022123.1 mouse_genomes_project 15 7005555 7112074 - MGP_C57BL6NJ_P0041008 protein_coding protein_coding MGP_C57BL6NJ_T0041009.1 MGP_C57BL6NJ_G0022123.1 mouse_genomes_project 15 7039365 7112026 - MGP_C57BL6NJ_P0041009 protein_coding protein_coding MGP_C57BL6NJ_T0041010.1 MGP_C57BL6NJ_G0022123.1 mouse_genomes_project 15 7062633 7112026 - MGP_C57BL6NJ_P0041010 protein_coding protein_coding MGP_C57BL6NJ_T0041011.1 MGP_C57BL6NJ_G0022123.1 mouse_genomes_project 15 7062636 7111983 - MGP_C57BL6NJ_P0041011 protein_coding protein_coding MGP_C57BL6NJ_T0013370.1 MGP_C57BL6NJ_G0011415.1 mouse_genomes_project 15 5192010 5192551 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041858.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79320845 79381077 + Mroh1 protein_coding processed_transcript MGP_C57BL6NJ_T0041859.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79321097 79350994 + Mroh1 protein_coding processed_transcript MGP_C57BL6NJ_T0041860.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79321097 79394497 + MGP_C57BL6NJ_P0041860 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041861.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79321107 79394494 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041862.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79321116 79343578 + MGP_C57BL6NJ_P0041862 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041863.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79321137 79350993 + MGP_C57BL6NJ_P0041863 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041864.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79330273 79381077 + MGP_C57BL6NJ_P0041864 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041865.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79332558 79394437 + MGP_C57BL6NJ_P0041865 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041866.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79369232 79394497 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041867.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79369989 79375242 + MGP_C57BL6NJ_P0041867 Mroh1 protein_coding protein_coding MGP_C57BL6NJ_T0041868.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79382420 79388274 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041869.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79391111 79392679 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041870.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79392086 79392844 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041871.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79393272 79393843 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0041872.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79393320 79394497 + MGP_C57BL6NJ_P0041872 Mroh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041873.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79393597 79394497 + MGP_C57BL6NJ_P0041873 Mroh1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041874.1 MGP_C57BL6NJ_G0022398.1 mouse_genomes_project 15 79393612 79394496 + Mroh1 protein_coding retained_intron MGP_C57BL6NJ_T0040913.1 MGP_C57BL6NJ_G0022098.1 mouse_genomes_project 15 2110730 2120893 - MGP_C57BL6NJ_P0040913 Gm10250 protein_coding protein_coding MGP_C57BL6NJ_T0010247.1 MGP_C57BL6NJ_G0008332.1 mouse_genomes_project 15 35305189 35305267 - Mir875 miRNA miRNA MGP_C57BL6NJ_T0042512.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88850607 88924942 - MGP_C57BL6NJ_P0042512 Phf21b protein_coding protein_coding MGP_C57BL6NJ_T0042513.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88850608 88852676 - Phf21b protein_coding processed_transcript MGP_C57BL6NJ_T0042514.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88850610 88925881 - MGP_C57BL6NJ_P0042514 Phf21b protein_coding protein_coding MGP_C57BL6NJ_T0042515.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88851360 88925583 - MGP_C57BL6NJ_P0042515 Phf21b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042516.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88852597 88856721 - Phf21b protein_coding retained_intron MGP_C57BL6NJ_T0042517.1 MGP_C57BL6NJ_G0022592.1 mouse_genomes_project 15 88859779 88870199 - Phf21b protein_coding retained_intron MGP_C57BL6NJ_T0043009.1 MGP_C57BL6NJ_G0022748.1 mouse_genomes_project 15 105358401 105358688 - MGP_C57BL6NJ_P0043009 Gm17349 protein_coding protein_coding MGP_C57BL6NJ_T0099024.1 MGP_C57BL6NJ_G0037088.1 mouse_genomes_project 15 106249748 106249858 + n-R5s43 rRNA rRNA MGP_C57BL6NJ_T0041361.1 MGP_C57BL6NJ_G0022249.1 mouse_genomes_project 15 54121108 54417524 - MGP_C57BL6NJ_P0041361 Ext1 protein_coding protein_coding MGP_C57BL6NJ_T0041362.1 MGP_C57BL6NJ_G0022249.1 mouse_genomes_project 15 54125734 54417024 - MGP_C57BL6NJ_P0041362 Ext1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041363.1 MGP_C57BL6NJ_G0022249.1 mouse_genomes_project 15 54140148 54263759 - MGP_C57BL6NJ_P0041363 Ext1 protein_coding protein_coding MGP_C57BL6NJ_T0041364.1 MGP_C57BL6NJ_G0022249.1 mouse_genomes_project 15 54146627 54165828 - Ext1 protein_coding retained_intron MGP_C57BL6NJ_T0017925.1 MGP_C57BL6NJ_G0015690.1 mouse_genomes_project 15 67874214 67874702 + Gm20405 processed_transcript processed_transcript MGP_C57BL6NJ_T0041106.1 MGP_C57BL6NJ_G0022151.1 mouse_genomes_project 15 19645197 20167006 + MGP_C57BL6NJ_P0041106 Cdh12 protein_coding protein_coding MGP_C57BL6NJ_T0010266.1 MGP_C57BL6NJ_G0008351.1 mouse_genomes_project 15 79164653 79164721 + Mir6953 miRNA miRNA MGP_C57BL6NJ_T0040939.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3710187 3810333 + MGP_C57BL6NJ_P0040939 Fyb protein_coding protein_coding MGP_C57BL6NJ_T0040940.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3723186 3764480 + Fyb protein_coding retained_intron MGP_C57BL6NJ_T0040941.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3728340 3779453 + MGP_C57BL6NJ_P0040941 Fyb protein_coding protein_coding MGP_C57BL6NJ_T0040942.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3763465 3777053 + Fyb protein_coding retained_intron MGP_C57BL6NJ_T0040943.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3789116 3808037 + MGP_C57BL6NJ_P0040943 Fyb protein_coding protein_coding MGP_C57BL6NJ_T0040944.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3791489 3797287 + Fyb protein_coding retained_intron MGP_C57BL6NJ_T0040945.1 MGP_C57BL6NJ_G0022104.1 mouse_genomes_project 15 3807565 3810412 + Fyb protein_coding retained_intron MGP_C57BL6NJ_T0041646.1 MGP_C57BL6NJ_G0022345.1 mouse_genomes_project 15 77393277 77396390 - MGP_C57BL6NJ_P0041646 Ly6k protein_coding protein_coding MGP_C57BL6NJ_T0041647.1 MGP_C57BL6NJ_G0022345.1 mouse_genomes_project 15 77393277 77395937 - MGP_C57BL6NJ_P0041647 Ly6k protein_coding protein_coding MGP_C57BL6NJ_T0102867.1 MGP_C57BL6NJ_G0040661.1 mouse_genomes_project 15 77621341 77625297 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041408.1 MGP_C57BL6NJ_G0022266.1 mouse_genomes_project 15 58558455 58582671 - MGP_C57BL6NJ_P0041408 Slc22a22 protein_coding protein_coding MGP_C57BL6NJ_T0041409.1 MGP_C57BL6NJ_G0022266.1 mouse_genomes_project 15 58558459 58815973 - MGP_C57BL6NJ_P0041409 Slc22a22 protein_coding protein_coding MGP_C57BL6NJ_T0041410.1 MGP_C57BL6NJ_G0022266.1 mouse_genomes_project 15 58558720 58581181 - MGP_C57BL6NJ_P0041410 Slc22a22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041411.1 MGP_C57BL6NJ_G0022266.1 mouse_genomes_project 15 58572273 58582647 - MGP_C57BL6NJ_P0041411 Slc22a22 protein_coding protein_coding MGP_C57BL6NJ_T0010283.1 MGP_C57BL6NJ_G0008368.1 mouse_genomes_project 15 86181842 86181902 - Gm27331 miRNA miRNA MGP_C57BL6NJ_T0041481.1 MGP_C57BL6NJ_G0022298.1 mouse_genomes_project 15 65603178 65757269 - MGP_C57BL6NJ_P0041481 protein_coding protein_coding MGP_C57BL6NJ_T0041484.1 MGP_C57BL6NJ_G0022298.1 mouse_genomes_project 15 65603182 65798341 - MGP_C57BL6NJ_P0041484 protein_coding protein_coding MGP_C57BL6NJ_T0041486.1 MGP_C57BL6NJ_G0022298.1 mouse_genomes_project 15 65603641 65789094 - MGP_C57BL6NJ_P0041486 protein_coding protein_coding MGP_C57BL6NJ_T0041298.1 MGP_C57BL6NJ_G0022222.1 mouse_genomes_project 15 39648303 39664430 + MGP_C57BL6NJ_P0041298 Dcstamp protein_coding protein_coding MGP_C57BL6NJ_T0010256.1 MGP_C57BL6NJ_G0008341.1 mouse_genomes_project 15 46863534 46863596 - Gm23562 miRNA miRNA MGP_C57BL6NJ_T0042540.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89960543 89965268 - MGP_C57BL6NJ_P0042540 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0042541.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89960771 89965226 - MGP_C57BL6NJ_P0042541 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0042542.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89960815 89965216 - MGP_C57BL6NJ_P0042542 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0042543.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89960818 89964662 - MGP_C57BL6NJ_P0042543 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0042544.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89960828 89965269 - MGP_C57BL6NJ_P0042544 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0042545.1 MGP_C57BL6NJ_G0022605.1 mouse_genomes_project 15 89961799 89965231 - MGP_C57BL6NJ_P0042545 Cdpf1 protein_coding protein_coding MGP_C57BL6NJ_T0041640.1 MGP_C57BL6NJ_G0022342.1 mouse_genomes_project 15 77347529 77352715 - MGP_C57BL6NJ_P0041640 Lynx1 protein_coding protein_coding MGP_C57BL6NJ_T0041641.1 MGP_C57BL6NJ_G0022342.1 mouse_genomes_project 15 77351272 77352683 - MGP_C57BL6NJ_P0041641 Lynx1 protein_coding protein_coding MGP_C57BL6NJ_T0041642.1 MGP_C57BL6NJ_G0022342.1 mouse_genomes_project 15 77351987 77352693 - Lynx1 protein_coding retained_intron MGP_C57BL6NJ_T0043284.1 MGP_C57BL6NJ_G0022848.1 mouse_genomes_project 15 109289390 109294086 - MGP_C57BL6NJ_P0043284 Smug1 protein_coding protein_coding MGP_C57BL6NJ_T0043265.1 MGP_C57BL6NJ_G0022838.1 mouse_genomes_project 15 108806187 108823556 - MGP_C57BL6NJ_P0043265 Calcoco1 protein_coding protein_coding MGP_C57BL6NJ_T0043266.1 MGP_C57BL6NJ_G0022838.1 mouse_genomes_project 15 108806380 108809311 - MGP_C57BL6NJ_P0043266 Calcoco1 protein_coding protein_coding MGP_C57BL6NJ_T0043267.1 MGP_C57BL6NJ_G0022838.1 mouse_genomes_project 15 108806993 108823509 - MGP_C57BL6NJ_P0043267 Calcoco1 protein_coding protein_coding MGP_C57BL6NJ_T0043268.1 MGP_C57BL6NJ_G0022838.1 mouse_genomes_project 15 108811602 108817174 - Calcoco1 protein_coding retained_intron MGP_C57BL6NJ_T0041467.1 MGP_C57BL6NJ_G0022292.1 mouse_genomes_project 15 61542203 61543956 - MGP_C57BL6NJ_P0041467 4933412E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0041563.1 MGP_C57BL6NJ_G0022316.1 mouse_genomes_project 15 69208235 69254817 - MGP_C57BL6NJ_P0041563 St3gal1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042247.1 MGP_C57BL6NJ_G0022512.1 mouse_genomes_project 15 84225634 84254149 + MGP_C57BL6NJ_P0042247 Fam83f protein_coding protein_coding MGP_C57BL6NJ_T0042794.1 MGP_C57BL6NJ_G0022676.1 mouse_genomes_project 15 100936748 101136854 + MGP_C57BL6NJ_P0042794 Ano6 protein_coding protein_coding MGP_C57BL6NJ_T0017934.1 MGP_C57BL6NJ_G0015697.1 mouse_genomes_project 15 83182805 83185030 + Gm16575 processed_transcript processed_transcript MGP_C57BL6NJ_T0013410.1 MGP_C57BL6NJ_G0011455.1 mouse_genomes_project 15 80640387 80640951 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017907.1 MGP_C57BL6NJ_G0015683.1 mouse_genomes_project 15 4573899 4588429 + Gm16029 processed_transcript processed_transcript MGP_C57BL6NJ_T0041987.1 MGP_C57BL6NJ_G0022434.1 mouse_genomes_project 15 80721487 80743812 - MGP_C57BL6NJ_P0041987 Apol10b protein_coding protein_coding MGP_C57BL6NJ_T0010307.1 MGP_C57BL6NJ_G0008392.1 mouse_genomes_project 15 107274067 107274150 + Mir1941 miRNA miRNA MGP_C57BL6NJ_T0099016.1 MGP_C57BL6NJ_G0037080.1 mouse_genomes_project 15 10595192 10595292 + Gm24664 rRNA rRNA MGP_C57BL6NJ_T0099974.1 MGP_C57BL6NJ_G0038020.1 mouse_genomes_project 15 53510480 53510584 + Gm23545 snRNA snRNA MGP_C57BL6NJ_T0017908.1 MGP_C57BL6NJ_G0015684.1 mouse_genomes_project 15 16992953 17104863 - C030047K22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0101294.1 MGP_C57BL6NJ_G0039340.1 mouse_genomes_project 15 62933059 62933193 - Gm24696 snoRNA snoRNA MGP_C57BL6NJ_T0042921.1 MGP_C57BL6NJ_G0022719.1 mouse_genomes_project 15 104213745 104255445 - MGP_C57BL6NJ_P0042921 Arf3 protein_coding protein_coding MGP_C57BL6NJ_T0042922.1 MGP_C57BL6NJ_G0022719.1 mouse_genomes_project 15 104217299 104255448 - Arf3 protein_coding processed_transcript MGP_C57BL6NJ_T0042923.1 MGP_C57BL6NJ_G0022719.1 mouse_genomes_project 15 104218885 104255226 - MGP_C57BL6NJ_P0042923 Arf3 protein_coding protein_coding MGP_C57BL6NJ_T0041229.1 MGP_C57BL6NJ_G0022200.1 mouse_genomes_project 15 36007336 36012704 - MGP_C57BL6NJ_P0041229 protein_coding protein_coding MGP_C57BL6NJ_T0041841.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275161 79278240 + MGP_C57BL6NJ_P0041841 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0041842.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275161 79278241 + MGP_C57BL6NJ_P0041842 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0041843.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275173 79278241 + MGP_C57BL6NJ_P0041843 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0041844.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275176 79276874 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041845.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275194 79276315 + Maf1 protein_coding processed_transcript MGP_C57BL6NJ_T0041846.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275194 79278248 + MGP_C57BL6NJ_P0041846 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0041847.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275220 79275935 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041848.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275276 79276767 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041849.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275873 79277054 + MGP_C57BL6NJ_P0041849 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0041850.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79275901 79276768 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041851.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79276637 79277859 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041852.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79276761 79277894 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041853.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79276968 79277941 + Maf1 protein_coding retained_intron MGP_C57BL6NJ_T0041854.1 MGP_C57BL6NJ_G0022394.1 mouse_genomes_project 15 79277282 79277983 + MGP_C57BL6NJ_P0041854 Maf1 protein_coding protein_coding MGP_C57BL6NJ_T0042649.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93810783 93813401 + MGP_C57BL6NJ_P0042649 Miox protein_coding protein_coding MGP_C57BL6NJ_T0042650.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93810846 93812510 + Miox protein_coding retained_intron MGP_C57BL6NJ_T0042651.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93811025 93813021 + Miox protein_coding retained_intron MGP_C57BL6NJ_T0042652.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93811315 93812798 + MGP_C57BL6NJ_P0042652 Miox protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042653.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93811316 93812800 + Miox protein_coding retained_intron MGP_C57BL6NJ_T0042654.1 MGP_C57BL6NJ_G0022636.1 mouse_genomes_project 15 93812818 93813397 + MGP_C57BL6NJ_P0042654 Miox protein_coding protein_coding MGP_C57BL6NJ_T0006975.1 MGP_C57BL6NJ_G0005747.1 mouse_genomes_project 15 104309824 104323374 + B130046B21Rik lincRNA lincRNA MGP_C57BL6NJ_T0010300.1 MGP_C57BL6NJ_G0008385.1 mouse_genomes_project 15 93782290 93782365 - Mir6959 miRNA miRNA MGP_C57BL6NJ_T0006911.1 MGP_C57BL6NJ_G0005708.1 mouse_genomes_project 15 9516472 9521705 + 1700047G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006912.1 MGP_C57BL6NJ_G0005708.1 mouse_genomes_project 15 9516533 9522314 + 1700047G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006913.1 MGP_C57BL6NJ_G0005708.1 mouse_genomes_project 15 9516620 9521736 + 1700047G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0006914.1 MGP_C57BL6NJ_G0005708.1 mouse_genomes_project 15 9519290 9522299 + 1700047G03Rik lincRNA lincRNA MGP_C57BL6NJ_T0042326.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85501337 85526100 + MGP_C57BL6NJ_P0042326 Tef protein_coding protein_coding MGP_C57BL6NJ_T0042327.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85501623 85504966 + Tef protein_coding processed_transcript MGP_C57BL6NJ_T0042328.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85501646 85504271 + Tef protein_coding processed_transcript MGP_C57BL6NJ_T0042329.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85501653 85515950 + Tef protein_coding retained_intron MGP_C57BL6NJ_T0042330.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85501742 85504828 + Tef protein_coding processed_transcript MGP_C57BL6NJ_T0042331.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85509962 85520451 + MGP_C57BL6NJ_P0042331 Tef protein_coding protein_coding MGP_C57BL6NJ_T0042332.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85510330 85525937 + MGP_C57BL6NJ_P0042332 Tef protein_coding protein_coding MGP_C57BL6NJ_T0042333.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85511096 85514147 + MGP_C57BL6NJ_P0042333 Tef protein_coding protein_coding MGP_C57BL6NJ_T0042334.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85519787 85520578 + Tef protein_coding processed_transcript MGP_C57BL6NJ_T0042335.1 MGP_C57BL6NJ_G0022530.1 mouse_genomes_project 15 85520137 85523018 + Tef protein_coding retained_intron MGP_C57BL6NJ_T0101265.1 MGP_C57BL6NJ_G0039311.1 mouse_genomes_project 15 3253683 3253815 - Gm23139 snoRNA snoRNA MGP_C57BL6NJ_T0042814.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089181 103111912 - MGP_C57BL6NJ_P0042814 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0042815.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089191 103112310 - MGP_C57BL6NJ_P0042815 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0042816.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089194 103112176 - MGP_C57BL6NJ_P0042816 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0042817.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089406 103112178 - MGP_C57BL6NJ_P0042817 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0042818.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089523 103111932 - MGP_C57BL6NJ_P0042818 Rapgef3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042819.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103089606 103093203 - Rapgef3 protein_coding retained_intron MGP_C57BL6NJ_T0042820.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103090766 103112099 - Rapgef3 protein_coding retained_intron MGP_C57BL6NJ_T0042821.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103094037 103095036 - Rapgef3 protein_coding retained_intron MGP_C57BL6NJ_T0042822.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103094687 103101972 - Rapgef3 protein_coding retained_intron MGP_C57BL6NJ_T0042824.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103103366 103104895 - Rapgef3 protein_coding processed_transcript MGP_C57BL6NJ_T0042825.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103103828 103111558 - MGP_C57BL6NJ_P0042825 Rapgef3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042826.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103103833 103106349 - Rapgef3 protein_coding processed_transcript MGP_C57BL6NJ_T0042827.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103105143 103111776 - MGP_C57BL6NJ_P0042827 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0042828.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103105166 103106324 - Rapgef3 protein_coding retained_intron MGP_C57BL6NJ_T0042829.1 MGP_C57BL6NJ_G0022688.1 mouse_genomes_project 15 103111370 103112484 - MGP_C57BL6NJ_P0042829 Rapgef3 protein_coding protein_coding MGP_C57BL6NJ_T0013373.1 MGP_C57BL6NJ_G0011418.1 mouse_genomes_project 15 6226986 6229154 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043300.1 MGP_C57BL6NJ_G0022852.1 mouse_genomes_project 15 109417625 109449577 + MGP_C57BL6NJ_P0043300 Copz1 protein_coding protein_coding MGP_C57BL6NJ_T0042677.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93906304 93926138 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042682.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922801 93926302 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042683.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922801 93923603 - Chkb protein_coding processed_transcript MGP_C57BL6NJ_T0042684.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922808 93925881 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042685.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922808 93926341 - MGP_C57BL6NJ_P0042685 Chkb protein_coding protein_coding MGP_C57BL6NJ_T0042686.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922882 93924935 - MGP_C57BL6NJ_P0042686 Chkb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042687.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93922909 93923601 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042688.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93923556 93926350 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042689.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93923821 93925872 - Chkb protein_coding retained_intron MGP_C57BL6NJ_T0042690.1 MGP_C57BL6NJ_G0022644.1 mouse_genomes_project 15 93924076 93925535 - MGP_C57BL6NJ_P0042690 Chkb protein_coding protein_coding MGP_C57BL6NJ_T0043170.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108238730 108251662 + MGP_C57BL6NJ_P0043170 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043171.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108238741 108251655 + MGP_C57BL6NJ_P0043171 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043172.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108238773 108243067 + MGP_C57BL6NJ_P0043172 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043173.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108238791 108243589 + MGP_C57BL6NJ_P0043173 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043174.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108239691 108251663 + MGP_C57BL6NJ_P0043174 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043175.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108239828 108243503 + MGP_C57BL6NJ_P0043175 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043176.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108239862 108243491 + MGP_C57BL6NJ_P0043176 Zfp740 protein_coding protein_coding MGP_C57BL6NJ_T0043177.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108242342 108243373 + Zfp740 protein_coding retained_intron MGP_C57BL6NJ_T0043178.1 MGP_C57BL6NJ_G0022818.1 mouse_genomes_project 15 108242986 108251658 + Zfp740 protein_coding retained_intron MGP_C57BL6NJ_T0100000.1 MGP_C57BL6NJ_G0038046.1 mouse_genomes_project 15 98212430 98212534 + Gm26371 snRNA snRNA MGP_C57BL6NJ_T0010272.1 MGP_C57BL6NJ_G0008357.1 mouse_genomes_project 15 82361528 82361590 + Mir6956 miRNA miRNA MGP_C57BL6NJ_T0042298.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85249815 85252900 + Ep300 protein_coding processed_transcript MGP_C57BL6NJ_T0042299.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85249861 85319998 + MGP_C57BL6NJ_P0042299 Ep300 protein_coding protein_coding MGP_C57BL6NJ_T0042300.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85250772 85290908 + Ep300 protein_coding retained_intron MGP_C57BL6NJ_T0042301.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85279782 85290208 + MGP_C57BL6NJ_P0042301 Ep300 protein_coding protein_coding MGP_C57BL6NJ_T0042302.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85279800 85283106 + Ep300 protein_coding retained_intron MGP_C57BL6NJ_T0042303.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85287751 85293143 + MGP_C57BL6NJ_P0042303 Ep300 protein_coding protein_coding MGP_C57BL6NJ_T0042304.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85293069 85294553 + MGP_C57BL6NJ_P0042304 Ep300 protein_coding protein_coding MGP_C57BL6NJ_T0042305.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85301462 85308257 + Ep300 protein_coding retained_intron MGP_C57BL6NJ_T0042306.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85303875 85312526 + Ep300 protein_coding retained_intron MGP_C57BL6NJ_T0042307.1 MGP_C57BL6NJ_G0022525.1 mouse_genomes_project 15 85312770 85317103 + Ep300 protein_coding retained_intron MGP_C57BL6NJ_T0041985.1 MGP_C57BL6NJ_G0022432.1 mouse_genomes_project 15 80602679 80631377 + MGP_C57BL6NJ_P0041985 Apol11b protein_coding protein_coding MGP_C57BL6NJ_T0041468.1 MGP_C57BL6NJ_G0022293.1 mouse_genomes_project 15 62372138 62378225 - MGP_C57BL6NJ_P0041468 Fam84b protein_coding protein_coding MGP_C57BL6NJ_T0041469.1 MGP_C57BL6NJ_G0022293.1 mouse_genomes_project 15 62378176 62409726 - Fam84b protein_coding processed_transcript MGP_C57BL6NJ_T0101275.1 MGP_C57BL6NJ_G0039321.1 mouse_genomes_project 15 29369389 29369567 - Gm26163 snoRNA snoRNA MGP_C57BL6NJ_T0042988.1 MGP_C57BL6NJ_G0022742.1 mouse_genomes_project 15 105121243 105152591 - MGP_C57BL6NJ_P0042988 Faim2 protein_coding protein_coding MGP_C57BL6NJ_T0010245.1 MGP_C57BL6NJ_G0008330.1 mouse_genomes_project 15 28998687 28998761 - Mir3964 miRNA miRNA MGP_C57BL6NJ_T0017929.1 MGP_C57BL6NJ_G0015693.1 mouse_genomes_project 15 76185518 76192012 + 1700010B13Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017930.1 MGP_C57BL6NJ_G0015693.1 mouse_genomes_project 15 76185540 76187269 + 1700010B13Rik processed_transcript retained_intron MGP_C57BL6NJ_T0041184.1 MGP_C57BL6NJ_G0022182.1 mouse_genomes_project 15 33771677 33824064 + MGP_C57BL6NJ_P0041184 Laptm4b protein_coding protein_coding MGP_C57BL6NJ_T0042948.1 MGP_C57BL6NJ_G0022732.1 mouse_genomes_project 15 104650763 104659889 + Dnajc22 protein_coding processed_transcript MGP_C57BL6NJ_T0042949.1 MGP_C57BL6NJ_G0022732.1 mouse_genomes_project 15 104658281 104666399 + MGP_C57BL6NJ_P0042949 Dnajc22 protein_coding protein_coding MGP_C57BL6NJ_T0042379.1 MGP_C57BL6NJ_G0022543.1 mouse_genomes_project 15 85856636 85871878 + MGP_C57BL6NJ_P0042379 Ccdc134 protein_coding protein_coding MGP_C57BL6NJ_T0042706.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94097182 94106569 - MGP_C57BL6NJ_P0042706 Rabl2 protein_coding protein_coding MGP_C57BL6NJ_T0042707.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94097186 94106511 - Rabl2 protein_coding retained_intron MGP_C57BL6NJ_T0042708.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94097186 94106510 - MGP_C57BL6NJ_P0042708 Rabl2 protein_coding protein_coding MGP_C57BL6NJ_T0042709.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94097690 94105045 - MGP_C57BL6NJ_P0042709 Rabl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042710.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94097962 94099192 - Rabl2 protein_coding retained_intron MGP_C57BL6NJ_T0042711.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94098004 94106536 - MGP_C57BL6NJ_P0042711 Rabl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042712.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94098032 94106485 - MGP_C57BL6NJ_P0042712 Rabl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042713.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94098047 94098967 - MGP_C57BL6NJ_P0042713 Rabl2 protein_coding protein_coding MGP_C57BL6NJ_T0042714.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94098293 94106532 - MGP_C57BL6NJ_P0042714 Rabl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042715.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94100877 94106551 - Rabl2 protein_coding retained_intron MGP_C57BL6NJ_T0042716.1 MGP_C57BL6NJ_G0022651.1 mouse_genomes_project 15 94102538 94106522 - Rabl2 protein_coding processed_transcript MGP_C57BL6NJ_T0043068.1 MGP_C57BL6NJ_G0022770.1 mouse_genomes_project 15 106451989 106457645 + MGP_C57BL6NJ_P0043068 Dazap2 protein_coding protein_coding MGP_C57BL6NJ_T0042992.1 MGP_C57BL6NJ_G0022745.1 mouse_genomes_project 15 105245500 105249534 + MGP_C57BL6NJ_P0042992 Aqp6 protein_coding protein_coding MGP_C57BL6NJ_T0042993.1 MGP_C57BL6NJ_G0022745.1 mouse_genomes_project 15 105245508 105249540 + MGP_C57BL6NJ_P0042993 Aqp6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042626.1 MGP_C57BL6NJ_G0022630.1 mouse_genomes_project 15 93598562 93605618 - MGP_C57BL6NJ_P0042626 Mapk11 protein_coding protein_coding MGP_C57BL6NJ_T0010249.1 MGP_C57BL6NJ_G0008334.1 mouse_genomes_project 15 36304571 36304697 + Gm44310 miRNA miRNA MGP_C57BL6NJ_T0010285.1 MGP_C57BL6NJ_G0008370.1 mouse_genomes_project 15 86386072 86386132 - Gm27825 miRNA miRNA MGP_C57BL6NJ_T0010312.1 MGP_C57BL6NJ_G0008397.1 mouse_genomes_project 15 107692546 107692675 + Gm44323 miRNA miRNA MGP_C57BL6NJ_T0043042.1 MGP_C57BL6NJ_G0022762.1 mouse_genomes_project 15 106129527 106180738 + MGP_C57BL6NJ_P0043042 Methig1 protein_coding protein_coding MGP_C57BL6NJ_T0013415.1 MGP_C57BL6NJ_G0011460.1 mouse_genomes_project 15 85351928 85352552 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010293.1 MGP_C57BL6NJ_G0008378.1 mouse_genomes_project 15 89025180 89025278 - Mir1249 miRNA miRNA MGP_C57BL6NJ_T0041743.1 MGP_C57BL6NJ_G0022372.1 mouse_genomes_project 15 78802524 78807632 - MGP_C57BL6NJ_P0041743 Pycrl protein_coding protein_coding MGP_C57BL6NJ_T0099976.1 MGP_C57BL6NJ_G0038022.1 mouse_genomes_project 15 56445877 56445939 - Gm26296 snRNA snRNA MGP_C57BL6NJ_T0102877.1 MGP_C57BL6NJ_G0040671.1 mouse_genomes_project 15 78141852 78147755 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010292.1 MGP_C57BL6NJ_G0008377.1 mouse_genomes_project 15 88169698 88169806 + Mir6392 miRNA miRNA MGP_C57BL6NJ_T0006971.1 MGP_C57BL6NJ_G0005746.1 mouse_genomes_project 15 101425542 101449858 - 4833422M21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006972.1 MGP_C57BL6NJ_G0005746.1 mouse_genomes_project 15 101425542 101434872 - 4833422M21Rik lincRNA lincRNA MGP_C57BL6NJ_T0006973.1 MGP_C57BL6NJ_G0005746.1 mouse_genomes_project 15 101444011 101449790 - 4833422M21Rik lincRNA lincRNA MGP_C57BL6NJ_T0099990.1 MGP_C57BL6NJ_G0038036.1 mouse_genomes_project 15 80271115 80271261 - Gm24056 snRNA snRNA MGP_C57BL6NJ_T0042412.1 MGP_C57BL6NJ_G0022565.1 mouse_genomes_project 15 86668133 86778341 - MGP_C57BL6NJ_P0042412 Tcf20 protein_coding protein_coding MGP_C57BL6NJ_T0042413.1 MGP_C57BL6NJ_G0022565.1 mouse_genomes_project 15 86668133 86778341 - MGP_C57BL6NJ_P0042413 Tcf20 protein_coding protein_coding MGP_C57BL6NJ_T0041906.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79574873 79578813 - MGP_C57BL6NJ_P0041906 Tonsl protein_coding protein_coding MGP_C57BL6NJ_T0041907.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79578787 79582085 - MGP_C57BL6NJ_P0041907 Tonsl protein_coding protein_coding MGP_C57BL6NJ_T0041908.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79579023 79592577 - MGP_C57BL6NJ_P0041908 Tonsl protein_coding protein_coding MGP_C57BL6NJ_T0041909.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79579024 79582166 - Tonsl protein_coding retained_intron MGP_C57BL6NJ_T0041910.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79585558 79586462 - MGP_C57BL6NJ_P0041910 Tonsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041911.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79585591 79592548 - MGP_C57BL6NJ_P0041911 Tonsl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041912.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79589806 79590898 - Tonsl protein_coding retained_intron MGP_C57BL6NJ_T0041913.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79591175 79592257 - Tonsl protein_coding retained_intron MGP_C57BL6NJ_T0041914.1 MGP_C57BL6NJ_G0022409.1 mouse_genomes_project 15 79591477 79592459 - MGP_C57BL6NJ_P0041914 Tonsl protein_coding protein_coding MGP_C57BL6NJ_T0042374.1 MGP_C57BL6NJ_G0022541.1 mouse_genomes_project 15 85771531 85778919 + MGP_C57BL6NJ_P0042374 4930407I10Rik protein_coding protein_coding MGP_C57BL6NJ_T0041046.1 MGP_C57BL6NJ_G0022131.1 mouse_genomes_project 15 8003770 8161583 - MGP_C57BL6NJ_P0041046 Rai14 protein_coding protein_coding MGP_C57BL6NJ_T0041047.1 MGP_C57BL6NJ_G0022131.1 mouse_genomes_project 15 8003770 8162674 - MGP_C57BL6NJ_P0041047 Rai14 protein_coding protein_coding MGP_C57BL6NJ_T0011646.1 MGP_C57BL6NJ_G0009731.1 mouse_genomes_project 15 43421344 43421640 - Gm22037 misc_RNA misc_RNA MGP_C57BL6NJ_T0006947.1 MGP_C57BL6NJ_G0005728.1 mouse_genomes_project 15 70482311 70505154 - Gm20732 lincRNA lincRNA MGP_C57BL6NJ_T0041964.1 MGP_C57BL6NJ_G0022424.1 mouse_genomes_project 15 79901693 79916462 - MGP_C57BL6NJ_P0041964 Zfp647 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042490.1 MGP_C57BL6NJ_G0022586.1 mouse_genomes_project 15 88237603 88337727 + MGP_C57BL6NJ_P0042490 Parvb protein_coding protein_coding MGP_C57BL6NJ_T0042491.1 MGP_C57BL6NJ_G0022586.1 mouse_genomes_project 15 88237626 88282220 + MGP_C57BL6NJ_P0042491 Parvb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042492.1 MGP_C57BL6NJ_G0022586.1 mouse_genomes_project 15 88264786 88309198 + Parvb protein_coding processed_transcript MGP_C57BL6NJ_T0041156.1 MGP_C57BL6NJ_G0022172.1 mouse_genomes_project 15 30886397 30973166 - MGP_C57BL6NJ_P0041156 March6 protein_coding protein_coding MGP_C57BL6NJ_T0102874.1 MGP_C57BL6NJ_G0040668.1 mouse_genomes_project 15 78102690 78102919 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101296.1 MGP_C57BL6NJ_G0039342.1 mouse_genomes_project 15 71665720 71665852 - Gm24232 snoRNA snoRNA MGP_C57BL6NJ_T0041446.1 MGP_C57BL6NJ_G0022280.1 mouse_genomes_project 15 59933244 60086541 + MGP_C57BL6NJ_P0041446 Fer1l6 protein_coding protein_coding MGP_C57BL6NJ_T0041447.1 MGP_C57BL6NJ_G0022280.1 mouse_genomes_project 15 60059061 60067640 + Fer1l6 protein_coding processed_transcript MGP_C57BL6NJ_T0041448.1 MGP_C57BL6NJ_G0022280.1 mouse_genomes_project 15 60069972 60088700 + Fer1l6 protein_coding retained_intron MGP_C57BL6NJ_T0042588.1 MGP_C57BL6NJ_G0022622.1 mouse_genomes_project 15 93395552 93426223 - MGP_C57BL6NJ_P0042588 Mlc1 protein_coding protein_coding MGP_C57BL6NJ_T0042589.1 MGP_C57BL6NJ_G0022622.1 mouse_genomes_project 15 93395552 93426223 - MGP_C57BL6NJ_P0042589 Mlc1 protein_coding protein_coding MGP_C57BL6NJ_T0041975.1 MGP_C57BL6NJ_G0022428.1 mouse_genomes_project 15 80088763 80337004 - MGP_C57BL6NJ_P0041975 Rbfox2 protein_coding protein_coding MGP_C57BL6NJ_T0041976.1 MGP_C57BL6NJ_G0022428.1 mouse_genomes_project 15 80088764 80180367 - MGP_C57BL6NJ_P0041976 Rbfox2 protein_coding protein_coding MGP_C57BL6NJ_T0041977.1 MGP_C57BL6NJ_G0022428.1 mouse_genomes_project 15 80088764 80337004 - MGP_C57BL6NJ_P0041977 Rbfox2 protein_coding protein_coding MGP_C57BL6NJ_T0041978.1 MGP_C57BL6NJ_G0022428.1 mouse_genomes_project 15 80088764 80180367 - MGP_C57BL6NJ_P0041978 Rbfox2 protein_coding protein_coding MGP_C57BL6NJ_T0042150.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82836387 82862260 - MGP_C57BL6NJ_P0042150 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0042151.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82837680 82841128 - Csnk1e protein_coding retained_intron MGP_C57BL6NJ_T0042152.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82837697 82862263 - MGP_C57BL6NJ_P0042152 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0042153.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82842293 82862078 - MGP_C57BL6NJ_P0042153 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0042154.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82843456 82844112 - Csnk1e protein_coding retained_intron MGP_C57BL6NJ_T0042155.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82843978 82845372 - Csnk1e protein_coding retained_intron MGP_C57BL6NJ_T0042156.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82844550 82846257 - Csnk1e protein_coding retained_intron MGP_C57BL6NJ_T0042157.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82844668 82849680 - Csnk1e protein_coding retained_intron MGP_C57BL6NJ_T0042158.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82846211 82859278 - MGP_C57BL6NJ_P0042158 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0042159.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82846280 82862078 - MGP_C57BL6NJ_P0042159 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0042160.1 MGP_C57BL6NJ_G0022484.1 mouse_genomes_project 15 82849856 82864180 - MGP_C57BL6NJ_P0042160 Csnk1e protein_coding protein_coding MGP_C57BL6NJ_T0100002.1 MGP_C57BL6NJ_G0038048.1 mouse_genomes_project 15 101901146 101901254 + Gm22045 snRNA snRNA MGP_C57BL6NJ_T0042267.1 MGP_C57BL6NJ_G0022516.1 mouse_genomes_project 15 84584529 84595369 + MGP_C57BL6NJ_P0042267 Sgsm3 protein_coding protein_coding MGP_C57BL6NJ_T0042870.1 MGP_C57BL6NJ_G0022697.1 mouse_genomes_project 15 103547538 103549867 + MGP_C57BL6NJ_P0042870 Ccdc184 protein_coding protein_coding MGP_C57BL6NJ_T0041205.1 MGP_C57BL6NJ_G0022189.1 mouse_genomes_project 15 34152604 34265574 - MGP_C57BL6NJ_P0041205 Nipal2 protein_coding protein_coding MGP_C57BL6NJ_T0101269.1 MGP_C57BL6NJ_G0039315.1 mouse_genomes_project 15 19411978 19412106 + Gm25711 snoRNA snoRNA MGP_C57BL6NJ_T0040963.1 MGP_C57BL6NJ_G0022109.1 mouse_genomes_project 15 5019188 5043229 + MGP_C57BL6NJ_P0040963 Gdnf protein_coding protein_coding MGP_C57BL6NJ_T0041933.1 MGP_C57BL6NJ_G0022415.1 mouse_genomes_project 15 79664798 79667496 + MGP_C57BL6NJ_P0041933 Mfsd3 protein_coding protein_coding MGP_C57BL6NJ_T0042990.1 MGP_C57BL6NJ_G0022744.1 mouse_genomes_project 15 105233773 105237533 + MGP_C57BL6NJ_P0042990 Aqp5 protein_coding protein_coding MGP_C57BL6NJ_T0042991.1 MGP_C57BL6NJ_G0022744.1 mouse_genomes_project 15 105233952 105237754 + MGP_C57BL6NJ_P0042991 Aqp5 protein_coding protein_coding MGP_C57BL6NJ_T0011655.1 MGP_C57BL6NJ_G0009740.1 mouse_genomes_project 15 90333967 90334235 + Gm24011 misc_RNA misc_RNA MGP_C57BL6NJ_T0040875.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 155980 163773 + MGP_C57BL6NJ_P0040875 protein_coding protein_coding MGP_C57BL6NJ_T0040876.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 158200 173007 + MGP_C57BL6NJ_P0040876 protein_coding protein_coding MGP_C57BL6NJ_T0040877.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 158244 163726 + MGP_C57BL6NJ_P0040877 protein_coding protein_coding MGP_C57BL6NJ_T0040878.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 158354 173006 + MGP_C57BL6NJ_P0040878 protein_coding protein_coding MGP_C57BL6NJ_T0040879.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 158431 163655 + MGP_C57BL6NJ_P0040879 protein_coding protein_coding MGP_C57BL6NJ_T0040880.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 158432 163113 + protein_coding retained_intron MGP_C57BL6NJ_T0040881.1 MGP_C57BL6NJ_G0022086.1 mouse_genomes_project 15 160075 165262 + MGP_C57BL6NJ_P0040881 protein_coding protein_coding MGP_C57BL6NJ_T0013367.1 MGP_C57BL6NJ_G0011412.1 mouse_genomes_project 15 663801 664785 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017915.1 MGP_C57BL6NJ_G0015686.1 mouse_genomes_project 15 57961055 57965572 + Has2os processed_transcript antisense MGP_C57BL6NJ_T0017916.1 MGP_C57BL6NJ_G0015686.1 mouse_genomes_project 15 57964663 58065632 + Has2os processed_transcript antisense MGP_C57BL6NJ_T0017917.1 MGP_C57BL6NJ_G0015686.1 mouse_genomes_project 15 57965065 58065348 + Has2os processed_transcript antisense MGP_C57BL6NJ_T0017918.1 MGP_C57BL6NJ_G0015686.1 mouse_genomes_project 15 58052873 58065311 + Has2os processed_transcript lincRNA MGP_C57BL6NJ_T0041425.1 MGP_C57BL6NJ_G0022271.1 mouse_genomes_project 15 59408696 59420753 - MGP_C57BL6NJ_P0041425 9130401M01Rik protein_coding protein_coding MGP_C57BL6NJ_T0041426.1 MGP_C57BL6NJ_G0022271.1 mouse_genomes_project 15 59408707 59414333 - 9130401M01Rik protein_coding processed_transcript MGP_C57BL6NJ_T0041428.1 MGP_C57BL6NJ_G0022271.1 mouse_genomes_project 15 59415249 59420628 - MGP_C57BL6NJ_P0041428 9130401M01Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041429.1 MGP_C57BL6NJ_G0022271.1 mouse_genomes_project 15 59417393 59420763 - MGP_C57BL6NJ_P0041429 9130401M01Rik protein_coding protein_coding MGP_C57BL6NJ_T0042617.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577667 93583061 - Hdac10 protein_coding processed_transcript MGP_C57BL6NJ_T0042618.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577667 93583108 - MGP_C57BL6NJ_P0042618 Hdac10 protein_coding protein_coding MGP_C57BL6NJ_T0042619.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577669 93583069 - Hdac10 protein_coding retained_intron MGP_C57BL6NJ_T0042620.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577669 93583059 - Hdac10 protein_coding retained_intron MGP_C57BL6NJ_T0042621.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577671 93583087 - Hdac10 protein_coding retained_intron MGP_C57BL6NJ_T0042622.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93577932 93582856 - MGP_C57BL6NJ_P0042622 Hdac10 protein_coding protein_coding MGP_C57BL6NJ_T0042623.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93578034 93580093 - Hdac10 protein_coding processed_transcript MGP_C57BL6NJ_T0042624.1 MGP_C57BL6NJ_G0022628.1 mouse_genomes_project 15 93580386 93581898 - Hdac10 protein_coding processed_transcript MGP_C57BL6NJ_T0042800.1 MGP_C57BL6NJ_G0022679.1 mouse_genomes_project 15 101624659 101675900 - MGP_C57BL6NJ_P0042800 Scaf11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042801.1 MGP_C57BL6NJ_G0022679.1 mouse_genomes_project 15 101624661 101675962 - MGP_C57BL6NJ_P0042801 Scaf11 protein_coding protein_coding MGP_C57BL6NJ_T0013383.1 MGP_C57BL6NJ_G0011428.1 mouse_genomes_project 15 24709529 24709857 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041098.1 MGP_C57BL6NJ_G0022148.1 mouse_genomes_project 15 14816367 14921078 + MGP_C57BL6NJ_P0041098 Cdh9 protein_coding protein_coding MGP_C57BL6NJ_T0042895.1 MGP_C57BL6NJ_G0022710.1 mouse_genomes_project 15 103961746 103977949 - MGP_C57BL6NJ_P0042895 Kansl2 protein_coding protein_coding MGP_C57BL6NJ_T0042896.1 MGP_C57BL6NJ_G0022710.1 mouse_genomes_project 15 103962090 103977926 - MGP_C57BL6NJ_P0042896 Kansl2 protein_coding protein_coding MGP_C57BL6NJ_T0042283.1 MGP_C57BL6NJ_G0022519.1 mouse_genomes_project 15 84931969 84975460 - MGP_C57BL6NJ_P0042283 Slc25a17 protein_coding protein_coding MGP_C57BL6NJ_T0041704.1 MGP_C57BL6NJ_G0022361.1 mouse_genomes_project 15 78455532 78457118 + MGP_C57BL6NJ_P0041704 Gpihbp1 protein_coding protein_coding MGP_C57BL6NJ_T0041705.1 MGP_C57BL6NJ_G0022361.1 mouse_genomes_project 15 78455534 78457118 + MGP_C57BL6NJ_P0041705 Gpihbp1 protein_coding protein_coding MGP_C57BL6NJ_T0041706.1 MGP_C57BL6NJ_G0022361.1 mouse_genomes_project 15 78455558 78458386 + MGP_C57BL6NJ_P0041706 Gpihbp1 protein_coding protein_coding MGP_C57BL6NJ_T0041707.1 MGP_C57BL6NJ_G0022361.1 mouse_genomes_project 15 78455572 78457093 + Gpihbp1 protein_coding retained_intron MGP_C57BL6NJ_T0041708.1 MGP_C57BL6NJ_G0022361.1 mouse_genomes_project 15 78455572 78456849 + Gpihbp1 protein_coding retained_intron MGP_C57BL6NJ_T0042678.1 MGP_C57BL6NJ_G0022645.1 mouse_genomes_project 15 93906304 93922305 - MGP_C57BL6NJ_P0042678 Cpt1b protein_coding protein_coding MGP_C57BL6NJ_T0042679.1 MGP_C57BL6NJ_G0022645.1 mouse_genomes_project 15 93908661 93915196 - MGP_C57BL6NJ_P0042679 Cpt1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042680.1 MGP_C57BL6NJ_G0022645.1 mouse_genomes_project 15 93918269 93918977 - Cpt1b protein_coding retained_intron MGP_C57BL6NJ_T0042681.1 MGP_C57BL6NJ_G0022645.1 mouse_genomes_project 15 93919341 93922237 - MGP_C57BL6NJ_P0042681 Cpt1b protein_coding protein_coding MGP_C57BL6NJ_T0040921.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3412062 3560603 + Dab2 protein_coding processed_transcript MGP_C57BL6NJ_T0040922.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3412062 3565795 + MGP_C57BL6NJ_P0040922 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040923.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3412087 3540788 + MGP_C57BL6NJ_P0040923 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040924.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3412106 3553004 + MGP_C57BL6NJ_P0040924 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040925.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3412142 3451781 + Dab2 protein_coding processed_transcript MGP_C57BL6NJ_T0040926.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3509084 3565788 + MGP_C57BL6NJ_P0040926 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040927.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3509234 3565788 + MGP_C57BL6NJ_P0040927 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040928.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3509262 3564711 + MGP_C57BL6NJ_P0040928 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040929.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3509263 3564731 + MGP_C57BL6NJ_P0040929 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040930.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3509265 3553004 + MGP_C57BL6NJ_P0040930 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040931.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3511520 3543557 + MGP_C57BL6NJ_P0040931 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040932.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3514356 3545076 + MGP_C57BL6NJ_P0040932 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040933.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3547478 3563990 + MGP_C57BL6NJ_P0040933 Dab2 protein_coding protein_coding MGP_C57BL6NJ_T0040934.1 MGP_C57BL6NJ_G0022102.1 mouse_genomes_project 15 3548400 3550263 + Dab2 protein_coding retained_intron MGP_C57BL6NJ_T0101283.1 MGP_C57BL6NJ_G0039329.1 mouse_genomes_project 15 38890349 38890480 + Gm24789 snoRNA snoRNA MGP_C57BL6NJ_T0041696.1 MGP_C57BL6NJ_G0022359.1 mouse_genomes_project 15 78250472 78252422 + MGP_C57BL6NJ_P0041696 Ly6l protein_coding protein_coding MGP_C57BL6NJ_T0101282.1 MGP_C57BL6NJ_G0039328.1 mouse_genomes_project 15 37963817 37963953 + Gm22353 snoRNA snoRNA MGP_C57BL6NJ_T0042445.1 MGP_C57BL6NJ_G0022570.1 mouse_genomes_project 15 87056651 87080216 - MGP_C57BL6NJ_P0042445 Cyb5r3 protein_coding protein_coding MGP_C57BL6NJ_T0042446.1 MGP_C57BL6NJ_G0022570.1 mouse_genomes_project 15 87062516 87078130 - MGP_C57BL6NJ_P0042446 Cyb5r3 protein_coding protein_coding MGP_C57BL6NJ_T0042447.1 MGP_C57BL6NJ_G0022570.1 mouse_genomes_project 15 87065837 87077801 - MGP_C57BL6NJ_P0042447 Cyb5r3 protein_coding protein_coding MGP_C57BL6NJ_T0042590.1 MGP_C57BL6NJ_G0022623.1 mouse_genomes_project 15 93431323 93443450 + Mov10l1 protein_coding retained_intron MGP_C57BL6NJ_T0042591.1 MGP_C57BL6NJ_G0022623.1 mouse_genomes_project 15 93431323 93506018 + MGP_C57BL6NJ_P0042591 Mov10l1 protein_coding protein_coding MGP_C57BL6NJ_T0042592.1 MGP_C57BL6NJ_G0022623.1 mouse_genomes_project 15 93431408 93506022 + MGP_C57BL6NJ_P0042592 Mov10l1 protein_coding protein_coding MGP_C57BL6NJ_T0042593.1 MGP_C57BL6NJ_G0022623.1 mouse_genomes_project 15 93468893 93472130 + Mov10l1 protein_coding processed_transcript MGP_C57BL6NJ_T0042594.1 MGP_C57BL6NJ_G0022623.1 mouse_genomes_project 15 93472121 93506018 + MGP_C57BL6NJ_P0042594 Mov10l1 protein_coding protein_coding MGP_C57BL6NJ_T0041879.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79444168 79454032 - MGP_C57BL6NJ_P0041879 Dgat1 protein_coding protein_coding MGP_C57BL6NJ_T0041880.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79444170 79445334 - Dgat1 protein_coding retained_intron MGP_C57BL6NJ_T0041881.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79444221 79445468 - Dgat1 protein_coding retained_intron MGP_C57BL6NJ_T0041882.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79444677 79446099 - MGP_C57BL6NJ_P0041882 Dgat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041883.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79445429 79448759 - MGP_C57BL6NJ_P0041883 Dgat1 protein_coding protein_coding MGP_C57BL6NJ_T0041884.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79445744 79446476 - Dgat1 protein_coding retained_intron MGP_C57BL6NJ_T0041885.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79446055 79447349 - Dgat1 protein_coding retained_intron MGP_C57BL6NJ_T0041886.1 MGP_C57BL6NJ_G0022402.1 mouse_genomes_project 15 79446105 79446817 - Dgat1 protein_coding retained_intron MGP_C57BL6NJ_T0003785.1 MGP_C57BL6NJ_G0003416.1 mouse_genomes_project 15 105372636 105383446 - Gm16537 antisense antisense MGP_C57BL6NJ_T0042245.1 MGP_C57BL6NJ_G0022510.1 mouse_genomes_project 15 83983212 84103078 - MGP_C57BL6NJ_P0042245 Enthd1 protein_coding protein_coding MGP_C57BL6NJ_T0041764.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78939378 78962005 - MGP_C57BL6NJ_P0041764 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0041765.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78939378 78961975 - MGP_C57BL6NJ_P0041765 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0041766.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78939378 78961975 - MGP_C57BL6NJ_P0041766 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0041767.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78939378 78954940 - MGP_C57BL6NJ_P0041767 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0041768.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78941160 78943007 - MGP_C57BL6NJ_P0041768 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0041769.1 MGP_C57BL6NJ_G0022380.1 mouse_genomes_project 15 78941423 78943007 - MGP_C57BL6NJ_P0041769 Scrib protein_coding protein_coding MGP_C57BL6NJ_T0043154.1 MGP_C57BL6NJ_G0022808.1 mouse_genomes_project 15 107932076 107943045 - MGP_C57BL6NJ_P0043154 Krt79 protein_coding protein_coding MGP_C57BL6NJ_T0042045.1 MGP_C57BL6NJ_G0022455.1 mouse_genomes_project 15 81778850 81793364 - MGP_C57BL6NJ_P0042045 Il2rb protein_coding protein_coding MGP_C57BL6NJ_T0042046.1 MGP_C57BL6NJ_G0022455.1 mouse_genomes_project 15 81779622 81792054 - MGP_C57BL6NJ_P0042046 Il2rb protein_coding protein_coding MGP_C57BL6NJ_T0041612.1 MGP_C57BL6NJ_G0022332.1 mouse_genomes_project 15 76392737 76398085 + MGP_C57BL6NJ_P0041612 Gm6569 protein_coding protein_coding MGP_C57BL6NJ_T0099018.1 MGP_C57BL6NJ_G0037082.1 mouse_genomes_project 15 33114182 33114313 - Gm24476 rRNA rRNA MGP_C57BL6NJ_T0041144.1 MGP_C57BL6NJ_G0022167.1 mouse_genomes_project 15 29510956 30417850 + MGP_C57BL6NJ_P0041144 Ctnnd2 protein_coding protein_coding MGP_C57BL6NJ_T0042530.1 MGP_C57BL6NJ_G0022601.1 mouse_genomes_project 15 89444175 89578723 + MGP_C57BL6NJ_P0042530 Atxn10 protein_coding protein_coding MGP_C57BL6NJ_T0010310.1 MGP_C57BL6NJ_G0008395.1 mouse_genomes_project 15 107617438 107617567 + miRNA miRNA MGP_C57BL6NJ_T0043278.1 MGP_C57BL6NJ_G0022846.1 mouse_genomes_project 15 109129317 109141866 + Hoxc6 protein_coding processed_transcript MGP_C57BL6NJ_T0043279.1 MGP_C57BL6NJ_G0022846.1 mouse_genomes_project 15 109131589 109141104 + Hoxc6 protein_coding processed_transcript MGP_C57BL6NJ_T0043280.1 MGP_C57BL6NJ_G0022846.1 mouse_genomes_project 15 109140670 109142979 + MGP_C57BL6NJ_P0043280 Hoxc6 protein_coding protein_coding MGP_C57BL6NJ_T0042133.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82682605 82735233 - MGP_C57BL6NJ_P0042133 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042134.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82682605 82735181 - MGP_C57BL6NJ_P0042134 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042135.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82682605 82735208 - MGP_C57BL6NJ_P0042135 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042136.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82682605 82734969 - MGP_C57BL6NJ_P0042136 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042137.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82682609 82735258 - MGP_C57BL6NJ_P0042137 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042138.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82685548 82707778 - Pla2g6 protein_coding retained_intron MGP_C57BL6NJ_T0042139.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82706294 82710562 - Pla2g6 protein_coding retained_intron MGP_C57BL6NJ_T0042140.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82710517 82713644 - Pla2g6 protein_coding retained_intron MGP_C57BL6NJ_T0042141.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82713700 82735395 - MGP_C57BL6NJ_P0042141 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042142.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82716147 82725299 - Pla2g6 protein_coding retained_intron MGP_C57BL6NJ_T0042143.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82716215 82730571 - MGP_C57BL6NJ_P0042143 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0042144.1 MGP_C57BL6NJ_G0022481.1 mouse_genomes_project 15 82725157 82731493 - MGP_C57BL6NJ_P0042144 Pla2g6 protein_coding protein_coding MGP_C57BL6NJ_T0006950.1 MGP_C57BL6NJ_G0005731.1 mouse_genomes_project 15 81174717 81180170 + Gm17638 lincRNA lincRNA MGP_C57BL6NJ_T0043021.1 MGP_C57BL6NJ_G0022753.1 mouse_genomes_project 15 105444252 105516886 - MGP_C57BL6NJ_P0043021 Lima1 protein_coding protein_coding MGP_C57BL6NJ_T0043022.1 MGP_C57BL6NJ_G0022753.1 mouse_genomes_project 15 105447029 105449860 - Lima1 protein_coding retained_intron MGP_C57BL6NJ_T0043023.1 MGP_C57BL6NJ_G0022753.1 mouse_genomes_project 15 105514267 105556361 - Lima1 protein_coding retained_intron MGP_C57BL6NJ_T0041451.1 MGP_C57BL6NJ_G0022283.1 mouse_genomes_project 15 60323253 60327386 + MGP_C57BL6NJ_P0041451 Trmt12 protein_coding protein_coding MGP_C57BL6NJ_T0042881.1 MGP_C57BL6NJ_G0022704.1 mouse_genomes_project 15 103799535 103800637 - MGP_C57BL6NJ_P0042881 Olfr283 protein_coding protein_coding MGP_C57BL6NJ_T0099020.1 MGP_C57BL6NJ_G0037084.1 mouse_genomes_project 15 83133649 83133773 + n-R5s40 rRNA rRNA MGP_C57BL6NJ_T0006929.1 MGP_C57BL6NJ_G0005722.1 mouse_genomes_project 15 45089949 45103591 + lincRNA lincRNA MGP_C57BL6NJ_T0003760.1 MGP_C57BL6NJ_G0003397.1 mouse_genomes_project 15 74229381 74233054 + Gm16308 antisense antisense MGP_C57BL6NJ_T0042050.1 MGP_C57BL6NJ_G0022457.1 mouse_genomes_project 15 81840564 81847895 - MGP_C57BL6NJ_P0042050 Sstr3 protein_coding protein_coding MGP_C57BL6NJ_T0101297.1 MGP_C57BL6NJ_G0039343.1 mouse_genomes_project 15 71927418 71927547 - Gm23987 snoRNA snoRNA MGP_C57BL6NJ_T0043055.1 MGP_C57BL6NJ_G0022766.1 mouse_genomes_project 15 106271688 106296576 + MGP_C57BL6NJ_P0043055 Letmd1 protein_coding protein_coding MGP_C57BL6NJ_T0013385.1 MGP_C57BL6NJ_G0011430.1 mouse_genomes_project 15 36543431 36561536 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006980.1 MGP_C57BL6NJ_G0005752.1 mouse_genomes_project 15 107183933 107187337 + 6030408B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0006981.1 MGP_C57BL6NJ_G0005752.1 mouse_genomes_project 15 107183953 107188154 + 6030408B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0101277.1 MGP_C57BL6NJ_G0039323.1 mouse_genomes_project 15 31731460 31731531 - Snord123 snoRNA snoRNA MGP_C57BL6NJ_T0041267.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37824624 37866196 - MGP_C57BL6NJ_P0041267 Rrm2b protein_coding protein_coding MGP_C57BL6NJ_T0041268.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37828809 37865984 - MGP_C57BL6NJ_P0041268 Rrm2b protein_coding protein_coding MGP_C57BL6NJ_T0041269.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37828809 37865984 - MGP_C57BL6NJ_P0041269 Rrm2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041270.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37828809 37865984 - MGP_C57BL6NJ_P0041270 Rrm2b protein_coding protein_coding MGP_C57BL6NJ_T0041271.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37836440 37866022 - MGP_C57BL6NJ_P0041271 Rrm2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041272.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37849224 37860234 - Rrm2b protein_coding retained_intron MGP_C57BL6NJ_T0041273.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37849329 37865942 - MGP_C57BL6NJ_P0041273 Rrm2b protein_coding protein_coding MGP_C57BL6NJ_T0041274.1 MGP_C57BL6NJ_G0022210.1 mouse_genomes_project 15 37850928 37866411 - MGP_C57BL6NJ_P0041274 Rrm2b protein_coding protein_coding MGP_C57BL6NJ_T0042065.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82247909 82270211 + protein_coding processed_transcript MGP_C57BL6NJ_T0042066.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82248010 82261097 + MGP_C57BL6NJ_P0042066 protein_coding protein_coding MGP_C57BL6NJ_T0042067.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82248010 82261101 + MGP_C57BL6NJ_P0042067 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042068.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82248010 82261101 + MGP_C57BL6NJ_P0042068 protein_coding protein_coding MGP_C57BL6NJ_T0042069.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82248010 82261101 + MGP_C57BL6NJ_P0042069 protein_coding protein_coding MGP_C57BL6NJ_T0042070.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82248010 82261101 + MGP_C57BL6NJ_P0042070 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042071.1 MGP_C57BL6NJ_G0022466.1 mouse_genomes_project 15 82262968 82270696 + MGP_C57BL6NJ_P0042071 protein_coding protein_coding MGP_C57BL6NJ_T0043187.1 MGP_C57BL6NJ_G0022821.1 mouse_genomes_project 15 108324166 108326455 + MGP_C57BL6NJ_P0043187 Mfsd5 protein_coding protein_coding MGP_C57BL6NJ_T0041889.1 MGP_C57BL6NJ_G0022404.1 mouse_genomes_project 15 79482410 79485427 - MGP_C57BL6NJ_P0041889 Fbxl6 protein_coding protein_coding MGP_C57BL6NJ_T0010243.1 MGP_C57BL6NJ_G0008328.1 mouse_genomes_project 15 24992853 24992914 + Mir7212 miRNA miRNA MGP_C57BL6NJ_T0041683.1 MGP_C57BL6NJ_G0022355.1 mouse_genomes_project 15 77714925 77881428 - MGP_C57BL6NJ_P0041683 protein_coding protein_coding MGP_C57BL6NJ_T0041686.1 MGP_C57BL6NJ_G0022355.1 mouse_genomes_project 15 77876814 77880491 - protein_coding retained_intron MGP_C57BL6NJ_T0041687.1 MGP_C57BL6NJ_G0022355.1 mouse_genomes_project 15 77876817 77880653 - MGP_C57BL6NJ_P0041687 protein_coding protein_coding MGP_C57BL6NJ_T0041688.1 MGP_C57BL6NJ_G0022355.1 mouse_genomes_project 15 77876988 77880380 - MGP_C57BL6NJ_P0041688 protein_coding protein_coding MGP_C57BL6NJ_T0042524.1 MGP_C57BL6NJ_G0022597.1 mouse_genomes_project 15 89123710 89151121 + MGP_C57BL6NJ_P0042524 Fam118a protein_coding protein_coding MGP_C57BL6NJ_T0003748.1 MGP_C57BL6NJ_G0003387.1 mouse_genomes_project 15 37064512 37065751 - Gm16136 antisense antisense MGP_C57BL6NJ_T0003749.1 MGP_C57BL6NJ_G0003387.1 mouse_genomes_project 15 37064530 37065901 - Gm16136 antisense antisense MGP_C57BL6NJ_T0003750.1 MGP_C57BL6NJ_G0003387.1 mouse_genomes_project 15 37065246 37065733 - Gm16136 antisense antisense MGP_C57BL6NJ_T0042785.1 MGP_C57BL6NJ_G0022671.1 mouse_genomes_project 15 99566907 99579500 - MGP_C57BL6NJ_P0042785 Twf1 protein_coding protein_coding MGP_C57BL6NJ_T0042786.1 MGP_C57BL6NJ_G0022671.1 mouse_genomes_project 15 99568950 99575096 - Twf1 protein_coding processed_transcript MGP_C57BL6NJ_T0042787.1 MGP_C57BL6NJ_G0022671.1 mouse_genomes_project 15 99570611 99570978 - Twf1 protein_coding retained_intron MGP_C57BL6NJ_T0042788.1 MGP_C57BL6NJ_G0022671.1 mouse_genomes_project 15 99574034 99579510 - MGP_C57BL6NJ_P0042788 Twf1 protein_coding protein_coding MGP_C57BL6NJ_T0010305.1 MGP_C57BL6NJ_G0008390.1 mouse_genomes_project 15 106488676 106488743 - Mir6961 miRNA miRNA MGP_C57BL6NJ_T0041318.1 MGP_C57BL6NJ_G0022231.1 mouse_genomes_project 15 43446741 43479438 - MGP_C57BL6NJ_P0041318 Eif3e protein_coding protein_coding MGP_C57BL6NJ_T0041753.1 MGP_C57BL6NJ_G0022377.1 mouse_genomes_project 15 78883798 78885854 + Mapk15 protein_coding processed_transcript MGP_C57BL6NJ_T0041754.1 MGP_C57BL6NJ_G0022377.1 mouse_genomes_project 15 78883798 78889182 + MGP_C57BL6NJ_P0041754 Mapk15 protein_coding protein_coding MGP_C57BL6NJ_T0041755.1 MGP_C57BL6NJ_G0022377.1 mouse_genomes_project 15 78885968 78889182 + Mapk15 protein_coding retained_intron MGP_C57BL6NJ_T0041756.1 MGP_C57BL6NJ_G0022377.1 mouse_genomes_project 15 78886742 78889182 + Mapk15 protein_coding processed_transcript MGP_C57BL6NJ_T0043028.1 MGP_C57BL6NJ_G0022756.1 mouse_genomes_project 15 105747343 105939668 + MGP_C57BL6NJ_P0043028 Dip2b protein_coding protein_coding MGP_C57BL6NJ_T0043029.1 MGP_C57BL6NJ_G0022756.1 mouse_genomes_project 15 105870344 105935863 + MGP_C57BL6NJ_P0043029 Dip2b protein_coding protein_coding MGP_C57BL6NJ_T0043030.1 MGP_C57BL6NJ_G0022756.1 mouse_genomes_project 15 105870344 105939668 + MGP_C57BL6NJ_P0043030 Dip2b protein_coding protein_coding MGP_C57BL6NJ_T0043031.1 MGP_C57BL6NJ_G0022756.1 mouse_genomes_project 15 105923350 105925844 + Dip2b protein_coding processed_transcript MGP_C57BL6NJ_T0042582.1 MGP_C57BL6NJ_G0022619.1 mouse_genomes_project 15 93241851 93248932 + MGP_C57BL6NJ_P0042582 Creld2 protein_coding protein_coding MGP_C57BL6NJ_T0041445.1 MGP_C57BL6NJ_G0022279.1 mouse_genomes_project 15 59837228 59878077 + MGP_C57BL6NJ_P0041445 Fam91a1 protein_coding protein_coding MGP_C57BL6NJ_T0041150.1 MGP_C57BL6NJ_G0022170.1 mouse_genomes_project 15 30700129 30785436 - MGP_C57BL6NJ_P0041150 Ankrd33b protein_coding protein_coding MGP_C57BL6NJ_T0041151.1 MGP_C57BL6NJ_G0022170.1 mouse_genomes_project 15 30700130 30785403 - MGP_C57BL6NJ_P0041151 Ankrd33b protein_coding protein_coding MGP_C57BL6NJ_T0041152.1 MGP_C57BL6NJ_G0022170.1 mouse_genomes_project 15 30705072 30785209 - MGP_C57BL6NJ_P0041152 Ankrd33b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041153.1 MGP_C57BL6NJ_G0022170.1 mouse_genomes_project 15 30705981 30785403 - MGP_C57BL6NJ_P0041153 Ankrd33b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041154.1 MGP_C57BL6NJ_G0022170.1 mouse_genomes_project 15 30735688 30785245 - MGP_C57BL6NJ_P0041154 Ankrd33b protein_coding protein_coding MGP_C57BL6NJ_T0041723.1 MGP_C57BL6NJ_G0022369.1 mouse_genomes_project 15 78777046 78780564 - MGP_C57BL6NJ_P0041723 Naprt protein_coding protein_coding MGP_C57BL6NJ_T0042953.1 MGP_C57BL6NJ_G0022736.1 mouse_genomes_project 15 104873114 104890803 - MGP_C57BL6NJ_P0042953 Fam186b protein_coding protein_coding MGP_C57BL6NJ_T0003780.1 MGP_C57BL6NJ_G0003411.1 mouse_genomes_project 15 103111060 103113225 + Rapgef3os2 antisense antisense MGP_C57BL6NJ_T0042145.1 MGP_C57BL6NJ_G0022482.1 mouse_genomes_project 15 82759019 82771623 + MGP_C57BL6NJ_P0042145 Maff protein_coding protein_coding MGP_C57BL6NJ_T0042146.1 MGP_C57BL6NJ_G0022482.1 mouse_genomes_project 15 82759539 82771623 + MGP_C57BL6NJ_P0042146 Maff protein_coding protein_coding MGP_C57BL6NJ_T0041254.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37224028 37682635 - MGP_C57BL6NJ_P0041254 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041255.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37224028 37683068 - MGP_C57BL6NJ_P0041255 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041256.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37224071 37324555 - MGP_C57BL6NJ_P0041256 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041257.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37224120 37324544 - MGP_C57BL6NJ_P0041257 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041258.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37226477 37323736 - MGP_C57BL6NJ_P0041258 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041259.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37226741 37618277 - MGP_C57BL6NJ_P0041259 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041260.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37229964 37682635 - MGP_C57BL6NJ_P0041260 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041261.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37238161 37324527 - Ncald protein_coding processed_transcript MGP_C57BL6NJ_T0041262.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37260725 37683205 - MGP_C57BL6NJ_P0041262 Ncald protein_coding protein_coding MGP_C57BL6NJ_T0041264.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37297649 37617978 - Ncald protein_coding processed_transcript MGP_C57BL6NJ_T0041265.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37494906 37618277 - Ncald protein_coding processed_transcript MGP_C57BL6NJ_T0041266.1 MGP_C57BL6NJ_G0022208.1 mouse_genomes_project 15 37496273 37682874 - Ncald protein_coding processed_transcript MGP_C57BL6NJ_T0041003.1 MGP_C57BL6NJ_G0022120.1 mouse_genomes_project 15 6670328 6707174 + MGP_C57BL6NJ_P0041003 Ugt3a2 protein_coding protein_coding MGP_C57BL6NJ_T0041004.1 MGP_C57BL6NJ_G0022120.1 mouse_genomes_project 15 6670367 6698132 + Ugt3a2 protein_coding retained_intron MGP_C57BL6NJ_T0042882.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822921 103838089 + MGP_C57BL6NJ_P0042882 1700031M16Rik protein_coding protein_coding MGP_C57BL6NJ_T0042883.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822928 103840763 + MGP_C57BL6NJ_P0042883 1700031M16Rik protein_coding protein_coding MGP_C57BL6NJ_T0042884.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822947 103837300 + 1700031M16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0042885.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822947 103839883 + 1700031M16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0042886.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822947 103839883 + 1700031M16Rik protein_coding processed_transcript MGP_C57BL6NJ_T0042887.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822947 103840634 + MGP_C57BL6NJ_P0042887 1700031M16Rik protein_coding protein_coding MGP_C57BL6NJ_T0042888.1 MGP_C57BL6NJ_G0022705.1 mouse_genomes_project 15 103822947 103840767 + MGP_C57BL6NJ_P0042888 1700031M16Rik protein_coding protein_coding MGP_C57BL6NJ_T0042892.1 MGP_C57BL6NJ_G0022708.1 mouse_genomes_project 15 103910641 103912999 - MGP_C57BL6NJ_P0042892 Lalba protein_coding protein_coding MGP_C57BL6NJ_T0041012.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7574334 7744938 + Prlr protein_coding retained_intron MGP_C57BL6NJ_T0041013.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7574510 7763827 + Prlr protein_coding processed_transcript MGP_C57BL6NJ_T0041014.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7574742 7764097 + MGP_C57BL6NJ_P0041014 Prlr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041015.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7574751 7752550 + MGP_C57BL6NJ_P0041015 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041016.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7574877 7734281 + Prlr protein_coding retained_intron MGP_C57BL6NJ_T0041017.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7610544 7733569 + Prlr protein_coding processed_transcript MGP_C57BL6NJ_T0041018.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7613034 7733635 + MGP_C57BL6NJ_P0041018 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041019.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7621009 7757527 + MGP_C57BL6NJ_P0041019 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041020.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7621009 7761323 + MGP_C57BL6NJ_P0041020 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041021.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7621009 7764721 + MGP_C57BL6NJ_P0041021 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041022.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7646297 7736783 + MGP_C57BL6NJ_P0041022 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0041023.1 MGP_C57BL6NJ_G0022124.1 mouse_genomes_project 15 7728347 7736765 + MGP_C57BL6NJ_P0041023 Prlr protein_coding protein_coding MGP_C57BL6NJ_T0101288.1 MGP_C57BL6NJ_G0039334.1 mouse_genomes_project 15 48384259 48384396 + Gm23530 snoRNA snoRNA MGP_C57BL6NJ_T0042047.1 MGP_C57BL6NJ_G0022456.1 mouse_genomes_project 15 81821429 81827709 - C1qtnf6 protein_coding processed_transcript MGP_C57BL6NJ_T0042048.1 MGP_C57BL6NJ_G0022456.1 mouse_genomes_project 15 81821429 81827709 - MGP_C57BL6NJ_P0042048 C1qtnf6 protein_coding protein_coding MGP_C57BL6NJ_T0042049.1 MGP_C57BL6NJ_G0022456.1 mouse_genomes_project 15 81823206 81825411 - C1qtnf6 protein_coding processed_transcript MGP_C57BL6NJ_T0042282.1 MGP_C57BL6NJ_G0022518.1 mouse_genomes_project 15 84840386 84843978 + MGP_C57BL6NJ_P0042282 Mchr1 protein_coding protein_coding MGP_C57BL6NJ_T0042936.1 MGP_C57BL6NJ_G0022726.1 mouse_genomes_project 15 104404598 104412243 - MGP_C57BL6NJ_P0042936 Dhh protein_coding protein_coding MGP_C57BL6NJ_T0041076.1 MGP_C57BL6NJ_G0022143.1 mouse_genomes_project 15 9905361 9935131 + MGP_C57BL6NJ_P0041076 Golph3 protein_coding protein_coding MGP_C57BL6NJ_T0042317.1 MGP_C57BL6NJ_G0022527.1 mouse_genomes_project 15 85355969 85371922 - MGP_C57BL6NJ_P0042317 Chadl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042320.1 MGP_C57BL6NJ_G0022527.1 mouse_genomes_project 15 85364056 85375181 - MGP_C57BL6NJ_P0042320 Chadl protein_coding protein_coding MGP_C57BL6NJ_T0042321.1 MGP_C57BL6NJ_G0022527.1 mouse_genomes_project 15 85364072 85372101 - MGP_C57BL6NJ_P0042321 Chadl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042187.1 MGP_C57BL6NJ_G0022496.1 mouse_genomes_project 15 83233332 83251696 - MGP_C57BL6NJ_P0042187 Nptxr protein_coding protein_coding MGP_C57BL6NJ_T0042188.1 MGP_C57BL6NJ_G0022496.1 mouse_genomes_project 15 83233333 83251753 - MGP_C57BL6NJ_P0042188 Nptxr protein_coding protein_coding MGP_C57BL6NJ_T0042189.1 MGP_C57BL6NJ_G0022496.1 mouse_genomes_project 15 83236232 83237952 - Nptxr protein_coding processed_transcript MGP_C57BL6NJ_T0006922.1 MGP_C57BL6NJ_G0005715.1 mouse_genomes_project 15 38340657 38341977 + Gm26863 lincRNA lincRNA MGP_C57BL6NJ_T0041211.1 MGP_C57BL6NJ_G0022192.1 mouse_genomes_project 15 34927602 34936057 + MGP_C57BL6NJ_P0041211 Osr2 protein_coding protein_coding MGP_C57BL6NJ_T0101295.1 MGP_C57BL6NJ_G0039341.1 mouse_genomes_project 15 64512091 64512225 + Gm22521 snoRNA snoRNA MGP_C57BL6NJ_T0040981.1 MGP_C57BL6NJ_G0022115.1 mouse_genomes_project 15 6282149 6355164 + MGP_C57BL6NJ_P0040981 Ranbp3l protein_coding protein_coding MGP_C57BL6NJ_T0040982.1 MGP_C57BL6NJ_G0022115.1 mouse_genomes_project 15 6282149 6313066 + MGP_C57BL6NJ_P0040982 Ranbp3l protein_coding protein_coding MGP_C57BL6NJ_T0040983.1 MGP_C57BL6NJ_G0022115.1 mouse_genomes_project 15 6282149 6351970 + MGP_C57BL6NJ_P0040983 Ranbp3l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003773.1 MGP_C57BL6NJ_G0003406.1 mouse_genomes_project 15 86986925 86990783 - Gm17206 antisense antisense MGP_C57BL6NJ_T0013394.1 MGP_C57BL6NJ_G0011439.1 mouse_genomes_project 15 46347334 46349014 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040967.1 MGP_C57BL6NJ_G0022112.1 mouse_genomes_project 15 5404042 5523998 + MGP_C57BL6NJ_P0040967 2410089E03Rik protein_coding protein_coding MGP_C57BL6NJ_T0040968.1 MGP_C57BL6NJ_G0022112.1 mouse_genomes_project 15 5404211 5506113 + MGP_C57BL6NJ_P0040968 2410089E03Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0040969.1 MGP_C57BL6NJ_G0022112.1 mouse_genomes_project 15 5423654 5424509 + 2410089E03Rik protein_coding retained_intron MGP_C57BL6NJ_T0040970.1 MGP_C57BL6NJ_G0022112.1 mouse_genomes_project 15 5433539 5445388 + 2410089E03Rik protein_coding retained_intron MGP_C57BL6NJ_T0040971.1 MGP_C57BL6NJ_G0022112.1 mouse_genomes_project 15 5463373 5466036 + 2410089E03Rik protein_coding retained_intron MGP_C57BL6NJ_T0101264.1 MGP_C57BL6NJ_G0039310.1 mouse_genomes_project 15 2108532 2108613 + Snord72 snoRNA snoRNA MGP_C57BL6NJ_T0043032.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105954082 105975743 + MGP_C57BL6NJ_P0043032 Atf1 protein_coding protein_coding MGP_C57BL6NJ_T0043033.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105954094 105955060 + Atf1 protein_coding retained_intron MGP_C57BL6NJ_T0043034.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105954779 105985054 + MGP_C57BL6NJ_P0043034 Atf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043035.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105954779 105985930 + MGP_C57BL6NJ_P0043035 Atf1 protein_coding protein_coding MGP_C57BL6NJ_T0043036.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105954797 105985097 + Atf1 protein_coding processed_transcript MGP_C57BL6NJ_T0043037.1 MGP_C57BL6NJ_G0022757.1 mouse_genomes_project 15 105978013 105984886 + MGP_C57BL6NJ_P0043037 Atf1 protein_coding protein_coding MGP_C57BL6NJ_T0006976.1 MGP_C57BL6NJ_G0005748.1 mouse_genomes_project 15 104517876 104521228 + 4930578M01Rik lincRNA lincRNA MGP_C57BL6NJ_T0041507.1 MGP_C57BL6NJ_G0022303.1 mouse_genomes_project 15 66793817 66918186 + MGP_C57BL6NJ_P0041507 Gm21798 protein_coding protein_coding MGP_C57BL6NJ_T0042924.1 MGP_C57BL6NJ_G0022720.1 mouse_genomes_project 15 104262998 104269456 - MGP_C57BL6NJ_P0042924 Wnt10b protein_coding protein_coding MGP_C57BL6NJ_T0042925.1 MGP_C57BL6NJ_G0022720.1 mouse_genomes_project 15 104263445 104268567 - MGP_C57BL6NJ_P0042925 Wnt10b protein_coding protein_coding MGP_C57BL6NJ_T0041380.1 MGP_C57BL6NJ_G0022258.1 mouse_genomes_project 15 56249577 56263964 - MGP_C57BL6NJ_P0041380 Dscc1 protein_coding protein_coding MGP_C57BL6NJ_T0041381.1 MGP_C57BL6NJ_G0022258.1 mouse_genomes_project 15 56249580 56263953 - MGP_C57BL6NJ_P0041381 Dscc1 protein_coding protein_coding MGP_C57BL6NJ_T0041382.1 MGP_C57BL6NJ_G0022258.1 mouse_genomes_project 15 56257197 56261236 - Dscc1 protein_coding retained_intron MGP_C57BL6NJ_T0043140.1 MGP_C57BL6NJ_G0022795.1 mouse_genomes_project 15 107593656 107599508 - MGP_C57BL6NJ_P0043140 Gm5414 protein_coding protein_coding MGP_C57BL6NJ_T0042928.1 MGP_C57BL6NJ_G0022723.1 mouse_genomes_project 15 104320127 104340066 - MGP_C57BL6NJ_P0042928 Prkag1 protein_coding protein_coding MGP_C57BL6NJ_T0042750.1 MGP_C57BL6NJ_G0022661.1 mouse_genomes_project 15 96786121 97014303 + Cntn1 protein_coding retained_intron MGP_C57BL6NJ_T0042751.1 MGP_C57BL6NJ_G0022661.1 mouse_genomes_project 15 96786121 97117390 + MGP_C57BL6NJ_P0042751 Cntn1 protein_coding protein_coding MGP_C57BL6NJ_T0042752.1 MGP_C57BL6NJ_G0022661.1 mouse_genomes_project 15 96877668 97117376 + MGP_C57BL6NJ_P0042752 Cntn1 protein_coding protein_coding MGP_C57BL6NJ_T0042753.1 MGP_C57BL6NJ_G0022661.1 mouse_genomes_project 15 96913041 97115537 + MGP_C57BL6NJ_P0042753 Cntn1 protein_coding protein_coding MGP_C57BL6NJ_T0042952.1 MGP_C57BL6NJ_G0022735.1 mouse_genomes_project 15 104842006 104849664 - MGP_C57BL6NJ_P0042952 Mcrs1 protein_coding protein_coding MGP_C57BL6NJ_T0042625.1 MGP_C57BL6NJ_G0022629.1 mouse_genomes_project 15 93586580 93596758 - MGP_C57BL6NJ_P0042625 Mapk12 protein_coding protein_coding MGP_C57BL6NJ_T0042691.1 MGP_C57BL6NJ_G0022646.1 mouse_genomes_project 15 93926030 93927285 + MGP_C57BL6NJ_P0042691 C730034F03Rik protein_coding protein_coding MGP_C57BL6NJ_T0013369.1 MGP_C57BL6NJ_G0011414.1 mouse_genomes_project 15 4518099 4518702 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042064.1 MGP_C57BL6NJ_G0022465.1 mouse_genomes_project 15 82220933 82241790 + MGP_C57BL6NJ_P0042064 Gga1 protein_coding protein_coding MGP_C57BL6NJ_T0042493.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88347986 88353238 + Parvg protein_coding processed_transcript MGP_C57BL6NJ_T0042494.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88348680 88369112 + MGP_C57BL6NJ_P0042494 Parvg protein_coding protein_coding MGP_C57BL6NJ_T0042495.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88348694 88355078 + MGP_C57BL6NJ_P0042495 Parvg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042496.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88348722 88355064 + MGP_C57BL6NJ_P0042496 Parvg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042497.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88348755 88356283 + Parvg protein_coding processed_transcript MGP_C57BL6NJ_T0042498.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88352306 88355114 + MGP_C57BL6NJ_P0042498 Parvg protein_coding protein_coding MGP_C57BL6NJ_T0042499.1 MGP_C57BL6NJ_G0022587.1 mouse_genomes_project 15 88352306 88369148 + MGP_C57BL6NJ_P0042499 Parvg protein_coding protein_coding MGP_C57BL6NJ_T0042087.1 MGP_C57BL6NJ_G0022470.1 mouse_genomes_project 15 82391699 82393986 + MGP_C57BL6NJ_P0042087 H1f0 protein_coding protein_coding MGP_C57BL6NJ_T0013390.1 MGP_C57BL6NJ_G0011435.1 mouse_genomes_project 15 39042169 39043100 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006917.1 MGP_C57BL6NJ_G0005710.1 mouse_genomes_project 15 31716078 31716734 + 4930518I17Rik lincRNA lincRNA MGP_C57BL6NJ_T0043152.1 MGP_C57BL6NJ_G0022806.1 mouse_genomes_project 15 107885639 107894209 - MGP_C57BL6NJ_P0043152 Krt76 protein_coding protein_coding MGP_C57BL6NJ_T0042295.1 MGP_C57BL6NJ_G0022522.1 mouse_genomes_project 15 85023229 85024603 - MGP_C57BL6NJ_P0042295 Dnajb7 protein_coding protein_coding MGP_C57BL6NJ_T0013395.1 MGP_C57BL6NJ_G0011440.1 mouse_genomes_project 15 48268143 48272051 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043136.1 MGP_C57BL6NJ_G0022791.1 mouse_genomes_project 15 107482094 107489999 - MGP_C57BL6NJ_P0043136 Krt84 protein_coding protein_coding MGP_C57BL6NJ_T0041289.1 MGP_C57BL6NJ_G0022218.1 mouse_genomes_project 15 38935814 38945909 + MGP_C57BL6NJ_P0041289 Cthrc1 protein_coding protein_coding MGP_C57BL6NJ_T0041290.1 MGP_C57BL6NJ_G0022218.1 mouse_genomes_project 15 38935963 38940475 + Cthrc1 protein_coding processed_transcript MGP_C57BL6NJ_T0041291.1 MGP_C57BL6NJ_G0022218.1 mouse_genomes_project 15 38942859 38945911 + Cthrc1 protein_coding retained_intron MGP_C57BL6NJ_T0042337.1 MGP_C57BL6NJ_G0022532.1 mouse_genomes_project 15 85554980 85565438 - MGP_C57BL6NJ_P0042337 Tob2 protein_coding protein_coding MGP_C57BL6NJ_T0042792.1 MGP_C57BL6NJ_G0022674.1 mouse_genomes_project 15 100744942 100778944 - MGP_C57BL6NJ_P0042792 Dbx2 protein_coding protein_coding MGP_C57BL6NJ_T0041921.1 MGP_C57BL6NJ_G0022412.1 mouse_genomes_project 15 79626023 79627688 - MGP_C57BL6NJ_P0041921 Foxh1 protein_coding protein_coding MGP_C57BL6NJ_T0041394.1 MGP_C57BL6NJ_G0022262.1 mouse_genomes_project 15 56745478 56768684 - MGP_C57BL6NJ_P0041394 Mrpl13 protein_coding protein_coding MGP_C57BL6NJ_T0041395.1 MGP_C57BL6NJ_G0022262.1 mouse_genomes_project 15 56745478 56768285 - MGP_C57BL6NJ_P0041395 Mrpl13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041396.1 MGP_C57BL6NJ_G0022262.1 mouse_genomes_project 15 56750020 56759549 - MGP_C57BL6NJ_P0041396 Mrpl13 protein_coding protein_coding MGP_C57BL6NJ_T0041397.1 MGP_C57BL6NJ_G0022262.1 mouse_genomes_project 15 56754255 56768219 - Mrpl13 protein_coding retained_intron MGP_C57BL6NJ_T0041398.1 MGP_C57BL6NJ_G0022262.1 mouse_genomes_project 15 56760835 56768211 - Mrpl13 protein_coding retained_intron MGP_C57BL6NJ_T0003744.1 MGP_C57BL6NJ_G0003383.1 mouse_genomes_project 15 1023473 1028065 - Gm15632 antisense antisense MGP_C57BL6NJ_T0043011.1 MGP_C57BL6NJ_G0022750.1 mouse_genomes_project 15 105376373 105383977 + MGP_C57BL6NJ_P0043011 Gpd1 protein_coding protein_coding MGP_C57BL6NJ_T0043012.1 MGP_C57BL6NJ_G0022750.1 mouse_genomes_project 15 105376437 105382764 + MGP_C57BL6NJ_P0043012 Gpd1 protein_coding protein_coding MGP_C57BL6NJ_T0043013.1 MGP_C57BL6NJ_G0022750.1 mouse_genomes_project 15 105378967 105381019 + Gpd1 protein_coding retained_intron MGP_C57BL6NJ_T0042450.1 MGP_C57BL6NJ_G0022572.1 mouse_genomes_project 15 87229879 87286600 - MGP_C57BL6NJ_P0042450 Arfgap3 protein_coding protein_coding MGP_C57BL6NJ_T0101278.1 MGP_C57BL6NJ_G0039324.1 mouse_genomes_project 15 33670753 33670877 - Gm24500 snoRNA snoRNA MGP_C57BL6NJ_T0042847.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103346232 103375456 - MGP_C57BL6NJ_P0042847 Col2a1 protein_coding protein_coding MGP_C57BL6NJ_T0042848.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103346232 103375418 - MGP_C57BL6NJ_P0042848 Col2a1 protein_coding protein_coding MGP_C57BL6NJ_T0042849.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103356939 103359552 - Col2a1 protein_coding retained_intron MGP_C57BL6NJ_T0042850.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103358741 103361107 - Col2a1 protein_coding processed_transcript MGP_C57BL6NJ_T0042851.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103365569 103370167 - Col2a1 protein_coding retained_intron MGP_C57BL6NJ_T0042852.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103365720 103370395 - Col2a1 protein_coding processed_transcript MGP_C57BL6NJ_T0042853.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103369072 103372589 - Col2a1 protein_coding processed_transcript MGP_C57BL6NJ_T0042854.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103369279 103375396 - MGP_C57BL6NJ_P0042854 Col2a1 protein_coding protein_coding MGP_C57BL6NJ_T0042855.1 MGP_C57BL6NJ_G0022693.1 mouse_genomes_project 15 103370944 103375418 - Col2a1 protein_coding retained_intron MGP_C57BL6NJ_T0006958.1 MGP_C57BL6NJ_G0005738.1 mouse_genomes_project 15 87293878 87306933 - 1700001L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006959.1 MGP_C57BL6NJ_G0005738.1 mouse_genomes_project 15 87293886 87306662 - 1700001L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006960.1 MGP_C57BL6NJ_G0005738.1 mouse_genomes_project 15 87293912 87306928 - 1700001L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0006961.1 MGP_C57BL6NJ_G0005738.1 mouse_genomes_project 15 87294970 87304793 - 1700001L05Rik lincRNA lincRNA MGP_C57BL6NJ_T0042170.1 MGP_C57BL6NJ_G0022490.1 mouse_genomes_project 15 83096874 83106397 + MGP_C57BL6NJ_P0042170 Cby1 protein_coding protein_coding MGP_C57BL6NJ_T0017932.1 MGP_C57BL6NJ_G0015695.1 mouse_genomes_project 15 81354553 81379797 + A730060N03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0043304.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578523 109598800 - MGP_C57BL6NJ_P0043304 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043305.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578576 109596936 - MGP_C57BL6NJ_P0043305 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043306.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578576 109596830 - MGP_C57BL6NJ_P0043306 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043307.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578579 109597892 - MGP_C57BL6NJ_P0043307 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043308.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578601 109598679 - MGP_C57BL6NJ_P0043308 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043309.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578613 109598674 - MGP_C57BL6NJ_P0043309 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043310.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109578632 109598709 - MGP_C57BL6NJ_P0043310 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043311.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109585743 109598739 - MGP_C57BL6NJ_P0043311 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043312.1 MGP_C57BL6NJ_G0022856.1 mouse_genomes_project 15 109588295 109598574 - MGP_C57BL6NJ_P0043312 Gtsf1 protein_coding protein_coding MGP_C57BL6NJ_T0043082.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106609651 106622830 + MGP_C57BL6NJ_P0043082 Slc4a8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043083.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106609670 106622709 + Slc4a8 protein_coding retained_intron MGP_C57BL6NJ_T0043084.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106609712 106667250 + MGP_C57BL6NJ_P0043084 Slc4a8 protein_coding protein_coding MGP_C57BL6NJ_T0043085.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106650618 106654160 + Slc4a8 protein_coding retained_intron MGP_C57BL6NJ_T0043086.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106660059 106663901 + Slc4a8 protein_coding processed_transcript MGP_C57BL6NJ_T0043087.1 MGP_C57BL6NJ_G0022775.1 mouse_genomes_project 15 106662224 106663671 + Slc4a8 protein_coding retained_intron MGP_C57BL6NJ_T0011642.1 MGP_C57BL6NJ_G0009727.1 mouse_genomes_project 15 7445372 7445660 + Gm26350 misc_RNA misc_RNA MGP_C57BL6NJ_T0042866.1 MGP_C57BL6NJ_G0022696.1 mouse_genomes_project 15 103511938 103544185 - MGP_C57BL6NJ_P0042866 Asb8 protein_coding protein_coding MGP_C57BL6NJ_T0042867.1 MGP_C57BL6NJ_G0022696.1 mouse_genomes_project 15 103513015 103522977 - MGP_C57BL6NJ_P0042867 Asb8 protein_coding protein_coding MGP_C57BL6NJ_T0042868.1 MGP_C57BL6NJ_G0022696.1 mouse_genomes_project 15 103513015 103522930 - MGP_C57BL6NJ_P0042868 Asb8 protein_coding protein_coding MGP_C57BL6NJ_T0042869.1 MGP_C57BL6NJ_G0022696.1 mouse_genomes_project 15 103513015 103544120 - MGP_C57BL6NJ_P0042869 Asb8 protein_coding protein_coding MGP_C57BL6NJ_T0042570.1 MGP_C57BL6NJ_G0022615.1 mouse_genomes_project 15 92995114 92996482 + MGP_C57BL6NJ_P0042570 Zdhhc25 protein_coding protein_coding MGP_C57BL6NJ_T0043045.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106184795 106220118 - MGP_C57BL6NJ_P0043045 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0043046.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106189460 106220065 - MGP_C57BL6NJ_P0043046 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0043047.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106194491 106200191 - MGP_C57BL6NJ_P0043047 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0043048.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106194679 106200370 - Slc11a2 protein_coding retained_intron MGP_C57BL6NJ_T0043049.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106203253 106222135 - MGP_C57BL6NJ_P0043049 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0043050.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106205087 106220032 - MGP_C57BL6NJ_P0043050 Slc11a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043051.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106206216 106221277 - MGP_C57BL6NJ_P0043051 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0043052.1 MGP_C57BL6NJ_G0022764.1 mouse_genomes_project 15 106207061 106221155 - MGP_C57BL6NJ_P0043052 Slc11a2 protein_coding protein_coding MGP_C57BL6NJ_T0041372.1 MGP_C57BL6NJ_G0022254.1 mouse_genomes_project 15 55712695 55744091 + MGP_C57BL6NJ_P0041372 Mal2 protein_coding protein_coding MGP_C57BL6NJ_T0099972.1 MGP_C57BL6NJ_G0038018.1 mouse_genomes_project 15 49579481 49579566 - Gm23185 snRNA snRNA MGP_C57BL6NJ_T0010279.1 MGP_C57BL6NJ_G0008364.1 mouse_genomes_project 15 84513494 84513576 + Mir5113 miRNA miRNA MGP_C57BL6NJ_T0101270.1 MGP_C57BL6NJ_G0039316.1 mouse_genomes_project 15 21930054 21930186 + Gm24656 snoRNA snoRNA MGP_C57BL6NJ_T0041576.1 MGP_C57BL6NJ_G0022322.1 mouse_genomes_project 15 75060297 75562900 - MGP_C57BL6NJ_P0041576 Trappc9 protein_coding protein_coding MGP_C57BL6NJ_T0041577.1 MGP_C57BL6NJ_G0022322.1 mouse_genomes_project 15 75060297 75557506 - MGP_C57BL6NJ_P0041577 Trappc9 protein_coding protein_coding MGP_C57BL6NJ_T0041578.1 MGP_C57BL6NJ_G0022322.1 mouse_genomes_project 15 75285150 75562900 - MGP_C57BL6NJ_P0041578 Trappc9 protein_coding protein_coding MGP_C57BL6NJ_T0041579.1 MGP_C57BL6NJ_G0022322.1 mouse_genomes_project 15 75338628 75562900 - MGP_C57BL6NJ_P0041579 Trappc9 protein_coding protein_coding MGP_C57BL6NJ_T0041689.1 MGP_C57BL6NJ_G0022356.1 mouse_genomes_project 15 77927631 77931517 + MGP_C57BL6NJ_P0041689 Ly6g protein_coding protein_coding MGP_C57BL6NJ_T0041691.1 MGP_C57BL6NJ_G0022356.1 mouse_genomes_project 15 77929083 77931130 + MGP_C57BL6NJ_P0041691 Ly6g protein_coding protein_coding MGP_C57BL6NJ_T0001079.1 MGP_C57BL6NJ_G0000988.1 mouse_genomes_project 15 109552568 109552905 + TEC TEC MGP_C57BL6NJ_T0101280.1 MGP_C57BL6NJ_G0039326.1 mouse_genomes_project 15 33997140 33997272 - Gm24523 snoRNA snoRNA MGP_C57BL6NJ_T0099966.1 MGP_C57BL6NJ_G0038012.1 mouse_genomes_project 15 37475698 37475818 - Gm24833 snRNA snRNA MGP_C57BL6NJ_T0040912.1 MGP_C57BL6NJ_G0022097.1 mouse_genomes_project 15 2106741 2109269 + MGP_C57BL6NJ_P0040912 Rpl37 protein_coding protein_coding MGP_C57BL6NJ_T0041212.1 MGP_C57BL6NJ_G0022193.1 mouse_genomes_project 15 35016662 35597279 + MGP_C57BL6NJ_P0041212 Vps13b protein_coding protein_coding MGP_C57BL6NJ_T0042875.1 MGP_C57BL6NJ_G0022700.1 mouse_genomes_project 15 103655884 103657210 - MGP_C57BL6NJ_P0042875 H1fnt protein_coding protein_coding MGP_C57BL6NJ_T0042717.1 MGP_C57BL6NJ_G0022652.1 mouse_genomes_project 15 94311311 94378266 - MGP_C57BL6NJ_P0042717 Syt10 protein_coding protein_coding MGP_C57BL6NJ_T0102425.1 MGP_C57BL6NJ_G0040337.1 mouse_genomes_project 15 65773536 65775889 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102426.1 MGP_C57BL6NJ_G0040337.1 mouse_genomes_project 15 65773550 65775769 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102427.1 MGP_C57BL6NJ_G0040337.1 mouse_genomes_project 15 65774558 65777707 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0017926.1 MGP_C57BL6NJ_G0015691.1 mouse_genomes_project 15 69067872 69111143 + Gm2895 processed_transcript processed_transcript MGP_C57BL6NJ_T0041277.1 MGP_C57BL6NJ_G0022212.1 mouse_genomes_project 15 38137925 38146665 + MGP_C57BL6NJ_P0041277 Odf1 protein_coding protein_coding MGP_C57BL6NJ_T0042198.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347079 83361880 + MGP_C57BL6NJ_P0042198 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042199.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347114 83361933 + MGP_C57BL6NJ_P0042199 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042200.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347478 83354101 + Apobec3 protein_coding processed_transcript MGP_C57BL6NJ_T0042201.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347823 83364251 + MGP_C57BL6NJ_P0042201 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042202.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347828 83364762 + MGP_C57BL6NJ_P0042202 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042203.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347828 83364762 + MGP_C57BL6NJ_P0042203 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042204.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347831 83361825 + MGP_C57BL6NJ_P0042204 Apobec3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042205.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347862 83363702 + MGP_C57BL6NJ_P0042205 Apobec3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042206.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347868 83364419 + MGP_C57BL6NJ_P0042206 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042207.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347869 83364769 + MGP_C57BL6NJ_P0042207 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042208.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83347875 83372304 + MGP_C57BL6NJ_P0042208 Apobec3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042209.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83350443 83364239 + MGP_C57BL6NJ_P0042209 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042210.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83350681 83354522 + MGP_C57BL6NJ_P0042210 Apobec3 protein_coding protein_coding MGP_C57BL6NJ_T0042211.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83354159 83362251 + Apobec3 protein_coding retained_intron MGP_C57BL6NJ_T0042212.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83356550 83364253 + Apobec3 protein_coding retained_intron MGP_C57BL6NJ_T0042213.1 MGP_C57BL6NJ_G0022499.1 mouse_genomes_project 15 83362455 83363424 + Apobec3 protein_coding retained_intron MGP_C57BL6NJ_T0102865.1 MGP_C57BL6NJ_G0040659.1 mouse_genomes_project 15 77545303 77546156 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0006953.1 MGP_C57BL6NJ_G0005734.1 mouse_genomes_project 15 83185929 83200595 + Gm16576 lincRNA lincRNA MGP_C57BL6NJ_T0042391.1 MGP_C57BL6NJ_G0022552.1 mouse_genomes_project 15 86093301 86097707 + Fam109b protein_coding processed_transcript MGP_C57BL6NJ_T0042393.1 MGP_C57BL6NJ_G0022552.1 mouse_genomes_project 15 86094912 86097721 + Fam109b protein_coding processed_transcript MGP_C57BL6NJ_T0042394.1 MGP_C57BL6NJ_G0022552.1 mouse_genomes_project 15 86095217 86100191 + MGP_C57BL6NJ_P0042394 Fam109b protein_coding protein_coding MGP_C57BL6NJ_T0042396.1 MGP_C57BL6NJ_G0022552.1 mouse_genomes_project 15 86095538 86100158 + MGP_C57BL6NJ_P0042396 Fam109b protein_coding protein_coding MGP_C57BL6NJ_T0043137.1 MGP_C57BL6NJ_G0022792.1 mouse_genomes_project 15 107505392 107516391 - MGP_C57BL6NJ_P0043137 Krt82 protein_coding protein_coding MGP_C57BL6NJ_T0001062.1 MGP_C57BL6NJ_G0000971.1 mouse_genomes_project 15 4161936 4168408 + TEC TEC MGP_C57BL6NJ_T0101291.1 MGP_C57BL6NJ_G0039337.1 mouse_genomes_project 15 59427892 59428028 - Gm22299 snoRNA snoRNA MGP_C57BL6NJ_T0041370.1 MGP_C57BL6NJ_G0022252.1 mouse_genomes_project 15 55377556 55406206 - MGP_C57BL6NJ_P0041370 Tnfrsf11b protein_coding protein_coding MGP_C57BL6NJ_T0041329.1 MGP_C57BL6NJ_G0022238.1 mouse_genomes_project 15 44922875 44948381 + MGP_C57BL6NJ_P0041329 Ebag9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041613.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77102925 77181022 + MGP_C57BL6NJ_P0041613 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041614.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77103129 77181022 + MGP_C57BL6NJ_P0041614 Adgrb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041615.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77103433 77181022 + MGP_C57BL6NJ_P0041615 Adgrb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041616.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77126999 77130134 + MGP_C57BL6NJ_P0041616 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041617.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77148891 77164330 + MGP_C57BL6NJ_P0041617 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041618.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77150985 77162418 + MGP_C57BL6NJ_P0041618 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041619.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77152117 77181022 + MGP_C57BL6NJ_P0041619 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041620.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77152171 77181001 + MGP_C57BL6NJ_P0041620 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041621.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77152219 77163072 + MGP_C57BL6NJ_P0041621 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0041622.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77161165 77181023 + Adgrb1 protein_coding processed_transcript MGP_C57BL6NJ_T0041623.1 MGP_C57BL6NJ_G0022333.1 mouse_genomes_project 15 77164353 77181023 + MGP_C57BL6NJ_P0041623 Adgrb1 protein_coding protein_coding MGP_C57BL6NJ_T0101273.1 MGP_C57BL6NJ_G0039319.1 mouse_genomes_project 15 29320875 29320948 - Gm24554 snoRNA snoRNA MGP_C57BL6NJ_T0099347.1 MGP_C57BL6NJ_G0037407.1 mouse_genomes_project 15 75291226 75295951 - Peg13 sense_intronic sense_intronic MGP_C57BL6NJ_T0042656.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93834981 93853839 + MGP_C57BL6NJ_P0042656 Ncaph2 protein_coding protein_coding MGP_C57BL6NJ_T0042657.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93834998 93853839 + MGP_C57BL6NJ_P0042657 Ncaph2 protein_coding protein_coding MGP_C57BL6NJ_T0042658.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93834998 93853839 + MGP_C57BL6NJ_P0042658 Ncaph2 protein_coding protein_coding MGP_C57BL6NJ_T0042659.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93835025 93853839 + MGP_C57BL6NJ_P0042659 Ncaph2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042660.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93835067 93844893 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042661.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93835083 93844917 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042662.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93835176 93846344 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042663.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93850704 93851688 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042664.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93850890 93852253 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042665.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93851045 93852202 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042666.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93851310 93851945 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042667.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93851659 93852537 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0042668.1 MGP_C57BL6NJ_G0022638.1 mouse_genomes_project 15 93851765 93852576 + Ncaph2 protein_coding retained_intron MGP_C57BL6NJ_T0001063.1 MGP_C57BL6NJ_G0000972.1 mouse_genomes_project 15 4859287 4859663 - TEC TEC MGP_C57BL6NJ_T0010276.1 MGP_C57BL6NJ_G0008361.1 mouse_genomes_project 15 83461790 83461847 - Mir7213 miRNA miRNA MGP_C57BL6NJ_T0006933.1 MGP_C57BL6NJ_G0005724.1 mouse_genomes_project 15 47091311 47112510 + 4930548G14Rik lincRNA lincRNA MGP_C57BL6NJ_T0006934.1 MGP_C57BL6NJ_G0005724.1 mouse_genomes_project 15 47093462 47093780 + 4930548G14Rik lincRNA lincRNA MGP_C57BL6NJ_T0101268.1 MGP_C57BL6NJ_G0039314.1 mouse_genomes_project 15 18613478 18613608 + Gm25976 snoRNA snoRNA MGP_C57BL6NJ_T0043123.1 MGP_C57BL6NJ_G0022783.1 mouse_genomes_project 15 107175022 107181656 + MGP_C57BL6NJ_P0043123 Atg101 protein_coding protein_coding MGP_C57BL6NJ_T0042754.1 MGP_C57BL6NJ_G0022662.1 mouse_genomes_project 15 97177093 97589103 + MGP_C57BL6NJ_P0042754 Pdzrn4 protein_coding protein_coding MGP_C57BL6NJ_T0042755.1 MGP_C57BL6NJ_G0022662.1 mouse_genomes_project 15 97418157 97589103 + MGP_C57BL6NJ_P0042755 Pdzrn4 protein_coding protein_coding MGP_C57BL6NJ_T0099998.1 MGP_C57BL6NJ_G0038044.1 mouse_genomes_project 15 93467628 93467787 + Gm23737 snRNA snRNA MGP_C57BL6NJ_T0013414.1 MGP_C57BL6NJ_G0011459.1 mouse_genomes_project 15 84530657 84531052 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006978.1 MGP_C57BL6NJ_G0005750.1 mouse_genomes_project 15 106450501 106451472 - C330013E15Rik lincRNA lincRNA MGP_C57BL6NJ_T0043285.1 MGP_C57BL6NJ_G0022849.1 mouse_genomes_project 15 109328741 109379505 - MGP_C57BL6NJ_P0043285 Cbx5 protein_coding protein_coding MGP_C57BL6NJ_T0043286.1 MGP_C57BL6NJ_G0022849.1 mouse_genomes_project 15 109333884 109354601 - MGP_C57BL6NJ_P0043286 Cbx5 protein_coding protein_coding MGP_C57BL6NJ_T0043287.1 MGP_C57BL6NJ_G0022849.1 mouse_genomes_project 15 109336452 109354554 - MGP_C57BL6NJ_P0043287 Cbx5 protein_coding protein_coding MGP_C57BL6NJ_T0043288.1 MGP_C57BL6NJ_G0022849.1 mouse_genomes_project 15 109352330 109354615 - MGP_C57BL6NJ_P0043288 Cbx5 protein_coding protein_coding MGP_C57BL6NJ_T0041831.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270907 79274978 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041832.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270907 79274979 - MGP_C57BL6NJ_P0041832 Sharpin protein_coding protein_coding MGP_C57BL6NJ_T0041833.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270908 79274915 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041834.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270908 79274943 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041835.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270921 79271706 - MGP_C57BL6NJ_P0041835 Sharpin protein_coding protein_coding MGP_C57BL6NJ_T0041836.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79270985 79272063 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041837.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79271496 79274618 - MGP_C57BL6NJ_P0041837 Sharpin protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041838.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79271716 79274559 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041839.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79271764 79274550 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0041840.1 MGP_C57BL6NJ_G0022393.1 mouse_genomes_project 15 79272479 79274580 - Sharpin protein_coding retained_intron MGP_C57BL6NJ_T0042414.1 MGP_C57BL6NJ_G0022566.1 mouse_genomes_project 15 86874158 86902854 - MGP_C57BL6NJ_P0042414 Nfam1 protein_coding protein_coding MGP_C57BL6NJ_T0042415.1 MGP_C57BL6NJ_G0022566.1 mouse_genomes_project 15 86876173 86912940 - MGP_C57BL6NJ_P0042415 Nfam1 protein_coding protein_coding MGP_C57BL6NJ_T0043151.1 MGP_C57BL6NJ_G0022805.1 mouse_genomes_project 15 107860016 107870990 - MGP_C57BL6NJ_P0043151 Krt77 protein_coding protein_coding MGP_C57BL6NJ_T0006920.1 MGP_C57BL6NJ_G0005713.1 mouse_genomes_project 15 37578919 37604498 + Gm15942 lincRNA lincRNA MGP_C57BL6NJ_T0006935.1 MGP_C57BL6NJ_G0005725.1 mouse_genomes_project 15 56114983 56130332 + Gm26684 lincRNA lincRNA MGP_C57BL6NJ_T0010246.1 MGP_C57BL6NJ_G0008331.1 mouse_genomes_project 15 35305050 35305138 - Mir599 miRNA miRNA MGP_C57BL6NJ_T0101267.1 MGP_C57BL6NJ_G0039313.1 mouse_genomes_project 15 13715888 13716016 + Gm25550 snoRNA snoRNA MGP_C57BL6NJ_T0040964.1 MGP_C57BL6NJ_G0022110.1 mouse_genomes_project 15 5081521 5328415 - MGP_C57BL6NJ_P0040964 Wdr70 protein_coding protein_coding MGP_C57BL6NJ_T0040965.1 MGP_C57BL6NJ_G0022110.1 mouse_genomes_project 15 5322232 5328349 - MGP_C57BL6NJ_P0040965 Wdr70 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042578.1 MGP_C57BL6NJ_G0022618.1 mouse_genomes_project 15 93227459 93238348 - Alg12 protein_coding retained_intron MGP_C57BL6NJ_T0042579.1 MGP_C57BL6NJ_G0022618.1 mouse_genomes_project 15 93227459 93241524 - MGP_C57BL6NJ_P0042579 Alg12 protein_coding protein_coding MGP_C57BL6NJ_T0042580.1 MGP_C57BL6NJ_G0022618.1 mouse_genomes_project 15 93227460 93241491 - MGP_C57BL6NJ_P0042580 Alg12 protein_coding protein_coding MGP_C57BL6NJ_T0042581.1 MGP_C57BL6NJ_G0022618.1 mouse_genomes_project 15 93236784 93241298 - MGP_C57BL6NJ_P0042581 Alg12 protein_coding protein_coding MGP_C57BL6NJ_T0043269.1 MGP_C57BL6NJ_G0022839.1 mouse_genomes_project 15 109047773 109057225 + MGP_C57BL6NJ_P0043269 Hoxc13 protein_coding protein_coding MGP_C57BL6NJ_T0041995.1 MGP_C57BL6NJ_G0022440.1 mouse_genomes_project 15 80949180 80954450 - MGP_C57BL6NJ_P0041995 Apol8 protein_coding protein_coding MGP_C57BL6NJ_T0041996.1 MGP_C57BL6NJ_G0022440.1 mouse_genomes_project 15 80949994 80956607 - MGP_C57BL6NJ_P0041996 Apol8 protein_coding protein_coding MGP_C57BL6NJ_T0043142.1 MGP_C57BL6NJ_G0022797.1 mouse_genomes_project 15 107672021 107676580 - MGP_C57BL6NJ_P0043142 Krt6a protein_coding protein_coding MGP_C57BL6NJ_T0010282.1 MGP_C57BL6NJ_G0008367.1 mouse_genomes_project 15 86170089 86170149 - Mir7684 miRNA miRNA MGP_C57BL6NJ_T0040973.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5918761 5999434 - MGP_C57BL6NJ_P0040973 Slc1a3 protein_coding protein_coding MGP_C57BL6NJ_T0040974.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5919364 5937220 - Slc1a3 protein_coding retained_intron MGP_C57BL6NJ_T0040975.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5928155 5929140 - Slc1a3 protein_coding retained_intron MGP_C57BL6NJ_T0040976.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5966608 5999086 - Slc1a3 protein_coding processed_transcript MGP_C57BL6NJ_T0040977.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5973680 5999079 - MGP_C57BL6NJ_P0040977 Slc1a3 protein_coding protein_coding MGP_C57BL6NJ_T0040978.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5975562 5999166 - Slc1a3 protein_coding retained_intron MGP_C57BL6NJ_T0040979.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5996279 5999151 - Slc1a3 protein_coding retained_intron MGP_C57BL6NJ_T0040980.1 MGP_C57BL6NJ_G0022114.1 mouse_genomes_project 15 5997412 5998258 - Slc1a3 protein_coding processed_transcript MGP_C57BL6NJ_T0100007.1 MGP_C57BL6NJ_G0038053.1 mouse_genomes_project 15 108535008 108535107 + Gm24128 snRNA snRNA MGP_C57BL6NJ_T0041488.1 MGP_C57BL6NJ_G0022300.1 mouse_genomes_project 15 65824958 65893252 - MGP_C57BL6NJ_P0041488 Fam49b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003754.1 MGP_C57BL6NJ_G0003391.1 mouse_genomes_project 15 59069172 59069986 - Gm16006 antisense antisense MGP_C57BL6NJ_T0040956.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4382019 4574307 - MGP_C57BL6NJ_P0040956 Egflam protein_coding protein_coding MGP_C57BL6NJ_T0040957.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4382477 4574354 - MGP_C57BL6NJ_P0040957 Egflam protein_coding protein_coding MGP_C57BL6NJ_T0040958.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4382482 4574398 - MGP_C57BL6NJ_P0040958 Egflam protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040959.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4388013 4398694 - Egflam protein_coding retained_intron MGP_C57BL6NJ_T0040960.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4409919 4574272 - Egflam protein_coding retained_intron MGP_C57BL6NJ_T0040961.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4431201 4432459 - Egflam protein_coding processed_transcript MGP_C57BL6NJ_T0040962.1 MGP_C57BL6NJ_G0022108.1 mouse_genomes_project 15 4476707 4574264 - Egflam protein_coding retained_intron MGP_C57BL6NJ_T0006915.1 MGP_C57BL6NJ_G0005709.1 mouse_genomes_project 15 23954599 24004533 - Gm2824 lincRNA lincRNA MGP_C57BL6NJ_T0006916.1 MGP_C57BL6NJ_G0005709.1 mouse_genomes_project 15 23978509 24004476 - Gm2824 lincRNA lincRNA MGP_C57BL6NJ_T0001067.1 MGP_C57BL6NJ_G0000976.1 mouse_genomes_project 15 19724975 19725396 + TEC TEC MGP_C57BL6NJ_T0040998.1 MGP_C57BL6NJ_G0022119.1 mouse_genomes_project 15 6575876 6637402 + Ugt3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0040999.1 MGP_C57BL6NJ_G0022119.1 mouse_genomes_project 15 6599545 6641922 + MGP_C57BL6NJ_P0040999 Ugt3a1 protein_coding protein_coding MGP_C57BL6NJ_T0041000.1 MGP_C57BL6NJ_G0022119.1 mouse_genomes_project 15 6599564 6625578 + Ugt3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0041001.1 MGP_C57BL6NJ_G0022119.1 mouse_genomes_project 15 6599566 6625500 + Ugt3a1 protein_coding processed_transcript MGP_C57BL6NJ_T0041002.1 MGP_C57BL6NJ_G0022119.1 mouse_genomes_project 15 6603217 6612501 + MGP_C57BL6NJ_P0041002 Ugt3a1 protein_coding protein_coding MGP_C57BL6NJ_T0100006.1 MGP_C57BL6NJ_G0038052.1 mouse_genomes_project 15 108421482 108421586 + Gm23590 snRNA snRNA MGP_C57BL6NJ_T0010278.1 MGP_C57BL6NJ_G0008363.1 mouse_genomes_project 15 84198718 84198782 + Mir6957 miRNA miRNA MGP_C57BL6NJ_T0042796.1 MGP_C57BL6NJ_G0022678.1 mouse_genomes_project 15 101486039 101560125 + MGP_C57BL6NJ_P0042796 Arid2 protein_coding protein_coding MGP_C57BL6NJ_T0042797.1 MGP_C57BL6NJ_G0022678.1 mouse_genomes_project 15 101486094 101616947 + MGP_C57BL6NJ_P0042797 Arid2 protein_coding protein_coding MGP_C57BL6NJ_T0042798.1 MGP_C57BL6NJ_G0022678.1 mouse_genomes_project 15 101564926 101567870 + Arid2 protein_coding retained_intron MGP_C57BL6NJ_T0042799.1 MGP_C57BL6NJ_G0022678.1 mouse_genomes_project 15 101582392 101615556 + Arid2 protein_coding retained_intron MGP_C57BL6NJ_T0101293.1 MGP_C57BL6NJ_G0039339.1 mouse_genomes_project 15 62256688 62256820 - Gm23835 snoRNA snoRNA MGP_C57BL6NJ_T0011648.1 MGP_C57BL6NJ_G0009733.1 mouse_genomes_project 15 63695273 63695446 + Gm27913 misc_RNA misc_RNA MGP_C57BL6NJ_T0042560.1 MGP_C57BL6NJ_G0022610.1 mouse_genomes_project 15 90063335 90204799 - MGP_C57BL6NJ_P0042560 Celsr1 protein_coding protein_coding MGP_C57BL6NJ_T0099984.1 MGP_C57BL6NJ_G0038030.1 mouse_genomes_project 15 70830966 70831073 + Gm25987 snRNA snRNA MGP_C57BL6NJ_T0099954.1 MGP_C57BL6NJ_G0038000.1 mouse_genomes_project 15 522286 522412 - Gm22031 snRNA snRNA MGP_C57BL6NJ_T0042561.1 MGP_C57BL6NJ_G0022611.1 mouse_genomes_project 15 90235279 90317471 + MGP_C57BL6NJ_P0042561 Gramd4 protein_coding protein_coding MGP_C57BL6NJ_T0042562.1 MGP_C57BL6NJ_G0022611.1 mouse_genomes_project 15 90236311 90317455 + MGP_C57BL6NJ_P0042562 Gramd4 protein_coding protein_coding MGP_C57BL6NJ_T0042563.1 MGP_C57BL6NJ_G0022611.1 mouse_genomes_project 15 90236456 90317468 + MGP_C57BL6NJ_P0042563 Gramd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042564.1 MGP_C57BL6NJ_G0022611.1 mouse_genomes_project 15 90247579 90301927 + Gramd4 protein_coding processed_transcript MGP_C57BL6NJ_T0042565.1 MGP_C57BL6NJ_G0022611.1 mouse_genomes_project 15 90254502 90271203 + Gramd4 protein_coding processed_transcript MGP_C57BL6NJ_T0099348.1 MGP_C57BL6NJ_G0037408.1 mouse_genomes_project 15 100160813 100231979 - 1700129L04Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0099349.1 MGP_C57BL6NJ_G0037408.1 mouse_genomes_project 15 100160887 100218844 - 1700129L04Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0042044.1 MGP_C57BL6NJ_G0022454.1 mouse_genomes_project 15 81736587 81766447 - MGP_C57BL6NJ_P0042044 Tmprss6 protein_coding protein_coding MGP_C57BL6NJ_T0010274.1 MGP_C57BL6NJ_G0008359.1 mouse_genomes_project 15 82893611 82893702 + Gm44302 miRNA miRNA MGP_C57BL6NJ_T0011659.1 MGP_C57BL6NJ_G0009744.1 mouse_genomes_project 15 104741973 104742061 - Gm25057 misc_RNA misc_RNA MGP_C57BL6NJ_T0010253.1 MGP_C57BL6NJ_G0008338.1 mouse_genomes_project 15 38441331 38441406 - Mir6951 miRNA miRNA MGP_C57BL6NJ_T0042505.1 MGP_C57BL6NJ_G0022590.1 mouse_genomes_project 15 88742856 88768080 + MGP_C57BL6NJ_P0042505 Prr5 protein_coding protein_coding MGP_C57BL6NJ_T0099960.1 MGP_C57BL6NJ_G0038006.1 mouse_genomes_project 15 22486578 22486736 - Gm23980 snRNA snRNA MGP_C57BL6NJ_T0042926.1 MGP_C57BL6NJ_G0022721.1 mouse_genomes_project 15 104292510 104296536 + MGP_C57BL6NJ_P0042926 Wnt1 protein_coding protein_coding MGP_C57BL6NJ_T0001070.1 MGP_C57BL6NJ_G0000979.1 mouse_genomes_project 15 65301859 65313620 + TEC TEC MGP_C57BL6NJ_T0013388.1 MGP_C57BL6NJ_G0011433.1 mouse_genomes_project 15 37357317 37357790 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040918.1 MGP_C57BL6NJ_G0022101.1 mouse_genomes_project 15 2221832 2258751 - Ptger4 protein_coding processed_transcript MGP_C57BL6NJ_T0040919.1 MGP_C57BL6NJ_G0022101.1 mouse_genomes_project 15 2249345 2260213 - MGP_C57BL6NJ_P0040919 Ptger4 protein_coding protein_coding MGP_C57BL6NJ_T0040920.1 MGP_C57BL6NJ_G0022101.1 mouse_genomes_project 15 2249345 2260228 - MGP_C57BL6NJ_P0040920 Ptger4 protein_coding protein_coding MGP_C57BL6NJ_T0013379.1 MGP_C57BL6NJ_G0011424.1 mouse_genomes_project 15 17808495 17810159 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042171.1 MGP_C57BL6NJ_G0022491.1 mouse_genomes_project 15 83109416 83113777 + MGP_C57BL6NJ_P0042171 Tomm22 protein_coding protein_coding MGP_C57BL6NJ_T0041719.1 MGP_C57BL6NJ_G0022365.1 mouse_genomes_project 15 78608071 78609151 - MGP_C57BL6NJ_P0041719 Mafa protein_coding protein_coding MGP_C57BL6NJ_T0042760.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98260242 98272436 - MGP_C57BL6NJ_P0042760 Zcrb1 protein_coding protein_coding MGP_C57BL6NJ_T0042761.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98260251 98272469 - MGP_C57BL6NJ_P0042761 Zcrb1 protein_coding protein_coding MGP_C57BL6NJ_T0042762.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98260255 98265318 - Zcrb1 protein_coding retained_intron MGP_C57BL6NJ_T0042763.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98260258 98265515 - Zcrb1 protein_coding retained_intron MGP_C57BL6NJ_T0042764.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98261762 98262290 - Zcrb1 protein_coding retained_intron MGP_C57BL6NJ_T0042765.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98261894 98265805 - Zcrb1 protein_coding retained_intron MGP_C57BL6NJ_T0042766.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98261946 98272469 - MGP_C57BL6NJ_P0042766 Zcrb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042767.1 MGP_C57BL6NJ_G0022665.1 mouse_genomes_project 15 98268203 98272408 - Zcrb1 protein_coding retained_intron MGP_C57BL6NJ_T0006977.1 MGP_C57BL6NJ_G0005749.1 mouse_genomes_project 15 106259864 106271346 - lincRNA lincRNA MGP_C57BL6NJ_T0101302.1 MGP_C57BL6NJ_G0039348.1 mouse_genomes_project 15 83989048 83989185 - Gm23220 snoRNA snoRNA MGP_C57BL6NJ_T0101286.1 MGP_C57BL6NJ_G0039332.1 mouse_genomes_project 15 44643935 44644067 + Gm25093 snoRNA snoRNA MGP_C57BL6NJ_T0041415.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59288047 59351165 + MGP_C57BL6NJ_P0041415 Tbc1d31 protein_coding protein_coding MGP_C57BL6NJ_T0041416.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59288082 59340506 + Tbc1d31 protein_coding processed_transcript MGP_C57BL6NJ_T0041417.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59288087 59295797 + MGP_C57BL6NJ_P0041417 Tbc1d31 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041418.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59288853 59340586 + Tbc1d31 protein_coding retained_intron MGP_C57BL6NJ_T0041419.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59289703 59335186 + Tbc1d31 protein_coding retained_intron MGP_C57BL6NJ_T0041420.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59291861 59336499 + Tbc1d31 protein_coding retained_intron MGP_C57BL6NJ_T0041421.1 MGP_C57BL6NJ_G0022269.1 mouse_genomes_project 15 59339516 59351171 + MGP_C57BL6NJ_P0041421 Tbc1d31 protein_coding protein_coding MGP_C57BL6NJ_T0043313.1 MGP_C57BL6NJ_G0022857.1 mouse_genomes_project 15 109608663 109625831 - MGP_C57BL6NJ_P0043313 BC048502 protein_coding protein_coding MGP_C57BL6NJ_T0041188.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33996854 33999258 - Rpl30 protein_coding processed_transcript MGP_C57BL6NJ_T0041189.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33996854 33999510 - Rpl30 protein_coding retained_intron MGP_C57BL6NJ_T0041190.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33996854 33999990 - MGP_C57BL6NJ_P0041190 Rpl30 protein_coding protein_coding MGP_C57BL6NJ_T0041191.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33996859 33999572 - MGP_C57BL6NJ_P0041191 Rpl30 protein_coding protein_coding MGP_C57BL6NJ_T0041192.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33996924 33998015 - Rpl30 protein_coding retained_intron MGP_C57BL6NJ_T0041193.1 MGP_C57BL6NJ_G0022185.1 mouse_genomes_project 15 33998870 33999609 - Rpl30 protein_coding processed_transcript MGP_C57BL6NJ_T0006967.1 MGP_C57BL6NJ_G0005744.1 mouse_genomes_project 15 101220853 101251055 - D030018L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006968.1 MGP_C57BL6NJ_G0005744.1 mouse_genomes_project 15 101220853 101252348 - D030018L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0006969.1 MGP_C57BL6NJ_G0005744.1 mouse_genomes_project 15 101246258 101252474 - D030018L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0041279.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38438286 38471232 - MGP_C57BL6NJ_P0041279 Azin1 protein_coding protein_coding MGP_C57BL6NJ_T0041280.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38439099 38471136 - MGP_C57BL6NJ_P0041280 Azin1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041281.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38443549 38448228 - Azin1 protein_coding retained_intron MGP_C57BL6NJ_T0041282.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38450674 38470129 - MGP_C57BL6NJ_P0041282 Azin1 protein_coding protein_coding MGP_C57BL6NJ_T0041283.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38452441 38470188 - MGP_C57BL6NJ_P0041283 Azin1 protein_coding protein_coding MGP_C57BL6NJ_T0041284.1 MGP_C57BL6NJ_G0022214.1 mouse_genomes_project 15 38466438 38471217 - Azin1 protein_coding processed_transcript MGP_C57BL6NJ_T0010296.1 MGP_C57BL6NJ_G0008381.1 mouse_genomes_project 15 91348343 91348438 + Gm23416 miRNA miRNA MGP_C57BL6NJ_T0041570.1 MGP_C57BL6NJ_G0022319.1 mouse_genomes_project 15 73845808 74131433 - MGP_C57BL6NJ_P0041570 Fam135b protein_coding protein_coding MGP_C57BL6NJ_T0041527.1 MGP_C57BL6NJ_G0022308.1 mouse_genomes_project 15 68027184 68337231 - MGP_C57BL6NJ_P0041527 Kcnq3 protein_coding protein_coding MGP_C57BL6NJ_T0041528.1 MGP_C57BL6NJ_G0022308.1 mouse_genomes_project 15 68065912 68139614 - Kcnq3 protein_coding processed_transcript MGP_C57BL6NJ_T0041529.1 MGP_C57BL6NJ_G0022308.1 mouse_genomes_project 15 68334079 68337058 - Kcnq3 protein_coding retained_intron MGP_C57BL6NJ_T0006919.1 MGP_C57BL6NJ_G0005712.1 mouse_genomes_project 15 36819715 36858430 + Gm26766 lincRNA lincRNA MGP_C57BL6NJ_T0042416.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86973546 86986621 + Serhl protein_coding processed_transcript MGP_C57BL6NJ_T0042417.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86976917 86986851 + MGP_C57BL6NJ_P0042417 Serhl protein_coding protein_coding MGP_C57BL6NJ_T0042418.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86981105 86987862 + Serhl protein_coding processed_transcript MGP_C57BL6NJ_T0042419.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985057 87016257 + MGP_C57BL6NJ_P0042419 Serhl protein_coding protein_coding MGP_C57BL6NJ_T0042420.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985066 87016254 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042421.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985116 86987898 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042422.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985142 86987923 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042423.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985147 87016257 + MGP_C57BL6NJ_P0042423 Serhl protein_coding protein_coding MGP_C57BL6NJ_T0042424.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985147 86987480 + MGP_C57BL6NJ_P0042424 Serhl protein_coding protein_coding MGP_C57BL6NJ_T0042425.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86985197 87012437 + MGP_C57BL6NJ_P0042425 Serhl protein_coding protein_coding MGP_C57BL6NJ_T0042426.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86986418 86988058 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042427.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86988550 87011910 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042428.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86988772 86993198 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042429.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86988774 86990648 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042430.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86989214 87010659 + MGP_C57BL6NJ_P0042430 Serhl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042431.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 86991428 87012646 + Serhl protein_coding processed_transcript MGP_C57BL6NJ_T0042432.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 87009124 87012783 + Serhl protein_coding processed_transcript MGP_C57BL6NJ_T0042434.1 MGP_C57BL6NJ_G0022567.1 mouse_genomes_project 15 87011740 87016240 + Serhl protein_coding retained_intron MGP_C57BL6NJ_T0042756.1 MGP_C57BL6NJ_G0022663.1 mouse_genomes_project 15 98098349 98136385 - MGP_C57BL6NJ_P0042756 Gxylt1 protein_coding protein_coding MGP_C57BL6NJ_T0042757.1 MGP_C57BL6NJ_G0022663.1 mouse_genomes_project 15 98103062 98136375 - MGP_C57BL6NJ_P0042757 Gxylt1 protein_coding protein_coding MGP_C57BL6NJ_T0041471.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63628034 63634704 + MGP_C57BL6NJ_P0041471 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041472.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63629692 63634702 + MGP_C57BL6NJ_P0041472 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041473.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63629865 63634726 + MGP_C57BL6NJ_P0041473 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041474.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63629923 63634419 + MGP_C57BL6NJ_P0041474 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041475.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63630223 63634260 + MGP_C57BL6NJ_P0041475 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041476.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63631335 63631919 + MGP_C57BL6NJ_P0041476 Myc protein_coding protein_coding MGP_C57BL6NJ_T0041477.1 MGP_C57BL6NJ_G0022295.1 mouse_genomes_project 15 63631723 63634605 + MGP_C57BL6NJ_P0041477 Myc protein_coding protein_coding MGP_C57BL6NJ_T0042731.1 MGP_C57BL6NJ_G0022658.1 mouse_genomes_project 15 95943023 96270221 - MGP_C57BL6NJ_P0042731 Slc2a13 protein_coding protein_coding MGP_C57BL6NJ_T0042732.1 MGP_C57BL6NJ_G0022658.1 mouse_genomes_project 15 96077720 96098385 - Slc2a13 protein_coding processed_transcript MGP_C57BL6NJ_T0042733.1 MGP_C57BL6NJ_G0022658.1 mouse_genomes_project 15 96237624 96270154 - Slc2a13 protein_coding processed_transcript MGP_C57BL6NJ_T0006984.1 MGP_C57BL6NJ_G0005755.1 mouse_genomes_project 15 109074306 109077975 - Hotair lincRNA lincRNA MGP_C57BL6NJ_T0041676.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77640165 77645713 - MGP_C57BL6NJ_P0041676 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0041677.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77640166 77642923 - MGP_C57BL6NJ_P0041677 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0041678.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77640166 77645837 - MGP_C57BL6NJ_P0041678 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0041679.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77640187 77645734 - MGP_C57BL6NJ_P0041679 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0041680.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77640239 77645793 - MGP_C57BL6NJ_P0041680 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0041681.1 MGP_C57BL6NJ_G0022353.1 mouse_genomes_project 15 77641822 77645641 - MGP_C57BL6NJ_P0041681 Ly6a protein_coding protein_coding MGP_C57BL6NJ_T0102871.1 MGP_C57BL6NJ_G0040665.1 mouse_genomes_project 15 78026376 78028577 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041830.1 MGP_C57BL6NJ_G0022392.1 mouse_genomes_project 15 79266708 79269802 + MGP_C57BL6NJ_P0041830 Cyc1 protein_coding protein_coding MGP_C57BL6NJ_T0042774.1 MGP_C57BL6NJ_G0022668.1 mouse_genomes_project 15 99221776 99365247 - MGP_C57BL6NJ_P0042774 Adamts20 protein_coding protein_coding MGP_C57BL6NJ_T0042775.1 MGP_C57BL6NJ_G0022668.1 mouse_genomes_project 15 99221913 99365078 - MGP_C57BL6NJ_P0042775 Adamts20 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042776.1 MGP_C57BL6NJ_G0022668.1 mouse_genomes_project 15 99275962 99365247 - MGP_C57BL6NJ_P0042776 Adamts20 protein_coding protein_coding MGP_C57BL6NJ_T0042777.1 MGP_C57BL6NJ_G0022668.1 mouse_genomes_project 15 99312785 99365339 - Adamts20 protein_coding retained_intron MGP_C57BL6NJ_T0042778.1 MGP_C57BL6NJ_G0022668.1 mouse_genomes_project 15 99355722 99431452 - Adamts20 protein_coding processed_transcript MGP_C57BL6NJ_T0043165.1 MGP_C57BL6NJ_G0022815.1 mouse_genomes_project 15 108176394 108181495 + MGP_C57BL6NJ_P0043165 Igfbp6 protein_coding protein_coding MGP_C57BL6NJ_T0041054.1 MGP_C57BL6NJ_G0022137.1 mouse_genomes_project 15 8886131 8902127 - MGP_C57BL6NJ_P0041054 Tars protein_coding protein_coding MGP_C57BL6NJ_T0042500.1 MGP_C57BL6NJ_G0022588.1 mouse_genomes_project 15 88408810 88482114 - MGP_C57BL6NJ_P0042500 1810041L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0042501.1 MGP_C57BL6NJ_G0022588.1 mouse_genomes_project 15 88409654 88481591 - MGP_C57BL6NJ_P0042501 1810041L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0042502.1 MGP_C57BL6NJ_G0022588.1 mouse_genomes_project 15 88436188 88481656 - MGP_C57BL6NJ_P0042502 1810041L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0042503.1 MGP_C57BL6NJ_G0022588.1 mouse_genomes_project 15 88446946 88477071 - MGP_C57BL6NJ_P0042503 1810041L15Rik protein_coding protein_coding MGP_C57BL6NJ_T0010263.1 MGP_C57BL6NJ_G0008348.1 mouse_genomes_project 15 77152139 77152234 + Gm26117 miRNA miRNA MGP_C57BL6NJ_T0013375.1 MGP_C57BL6NJ_G0011420.1 mouse_genomes_project 15 7676120 7676445 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041207.1 MGP_C57BL6NJ_G0022191.1 mouse_genomes_project 15 34470663 34784827 - MGP_C57BL6NJ_P0041207 Stk3 protein_coding protein_coding MGP_C57BL6NJ_T0041208.1 MGP_C57BL6NJ_G0022191.1 mouse_genomes_project 15 34470840 34784771 - MGP_C57BL6NJ_P0041208 Stk3 protein_coding protein_coding MGP_C57BL6NJ_T0041209.1 MGP_C57BL6NJ_G0022191.1 mouse_genomes_project 15 34573269 34609500 - Stk3 protein_coding retained_intron MGP_C57BL6NJ_T0041210.1 MGP_C57BL6NJ_G0022191.1 mouse_genomes_project 15 34690636 34784690 - MGP_C57BL6NJ_P0041210 Stk3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042937.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104418223 104433103 - MGP_C57BL6NJ_P0042937 Lmbr1l protein_coding protein_coding MGP_C57BL6NJ_T0042938.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104419961 104422676 - Lmbr1l protein_coding processed_transcript MGP_C57BL6NJ_T0042939.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104420920 104423002 - Lmbr1l protein_coding retained_intron MGP_C57BL6NJ_T0042940.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104421618 104423199 - Lmbr1l protein_coding retained_intron MGP_C57BL6NJ_T0042941.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104427240 104433237 - Lmbr1l protein_coding processed_transcript MGP_C57BL6NJ_T0042942.1 MGP_C57BL6NJ_G0022727.1 mouse_genomes_project 15 104429036 104432932 - Lmbr1l protein_coding processed_transcript MGP_C57BL6NJ_T0042162.1 MGP_C57BL6NJ_G0022486.1 mouse_genomes_project 15 82937898 82950782 + MGP_C57BL6NJ_P0042162 Kdelr3 protein_coding protein_coding MGP_C57BL6NJ_T0041634.1 MGP_C57BL6NJ_G0022338.1 mouse_genomes_project 15 77317585 77324365 + MGP_C57BL6NJ_P0041634 Them6 protein_coding protein_coding MGP_C57BL6NJ_T0042322.1 MGP_C57BL6NJ_G0022528.1 mouse_genomes_project 15 85384302 85413814 - MGP_C57BL6NJ_P0042322 Rangap1 protein_coding protein_coding MGP_C57BL6NJ_T0042323.1 MGP_C57BL6NJ_G0022528.1 mouse_genomes_project 15 85384302 85413814 - MGP_C57BL6NJ_P0042323 Rangap1 protein_coding protein_coding MGP_C57BL6NJ_T0042324.1 MGP_C57BL6NJ_G0022528.1 mouse_genomes_project 15 85384672 85413761 - MGP_C57BL6NJ_P0042324 Rangap1 protein_coding protein_coding MGP_C57BL6NJ_T0042905.1 MGP_C57BL6NJ_G0022712.1 mouse_genomes_project 15 104019329 104043622 + MGP_C57BL6NJ_P0042905 4930415O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0043302.1 MGP_C57BL6NJ_G0022854.1 mouse_genomes_project 15 109464675 109492343 - MGP_C57BL6NJ_P0043302 Zfp385a protein_coding protein_coding MGP_C57BL6NJ_T0011657.1 MGP_C57BL6NJ_G0009742.1 mouse_genomes_project 15 98092521 98092859 + Gm24447 misc_RNA misc_RNA MGP_C57BL6NJ_T0041508.1 MGP_C57BL6NJ_G0022304.1 mouse_genomes_project 15 66964524 67000949 - MGP_C57BL6NJ_P0041508 Gm21961 protein_coding protein_coding MGP_C57BL6NJ_T0041455.1 MGP_C57BL6NJ_G0022286.1 mouse_genomes_project 15 60386672 60392352 + MGP_C57BL6NJ_P0041455 Ndufb9 protein_coding protein_coding MGP_C57BL6NJ_T0042099.1 MGP_C57BL6NJ_G0022474.1 mouse_genomes_project 15 82480403 82510379 + MGP_C57BL6NJ_P0042099 Micall1 protein_coding protein_coding MGP_C57BL6NJ_T0010286.1 MGP_C57BL6NJ_G0008371.1 mouse_genomes_project 15 86393305 86393365 + Gm27622 miRNA miRNA MGP_C57BL6NJ_T0041194.1 MGP_C57BL6NJ_G0022186.1 mouse_genomes_project 15 34012040 34037489 + MGP_C57BL6NJ_P0041194 Erich5 protein_coding protein_coding MGP_C57BL6NJ_T0099979.1 MGP_C57BL6NJ_G0038025.1 mouse_genomes_project 15 60273337 60273493 - Gm24041 snRNA snRNA MGP_C57BL6NJ_T0043150.1 MGP_C57BL6NJ_G0022804.1 mouse_genomes_project 15 107846769 107852128 - MGP_C57BL6NJ_P0043150 Krt1 protein_coding protein_coding MGP_C57BL6NJ_T0041722.1 MGP_C57BL6NJ_G0022368.1 mouse_genomes_project 15 78770165 78774860 - MGP_C57BL6NJ_P0041722 Mroh6 protein_coding protein_coding MGP_C57BL6NJ_T0043088.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106724957 106799609 + MGP_C57BL6NJ_P0043088 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043089.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106724957 106799609 + MGP_C57BL6NJ_P0043089 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043090.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106725744 106882013 + MGP_C57BL6NJ_P0043090 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043091.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106725782 106918331 + MGP_C57BL6NJ_P0043091 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043092.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106728236 106918340 + MGP_C57BL6NJ_P0043092 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043093.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106728277 106913905 + MGP_C57BL6NJ_P0043093 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043094.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106728284 106913822 + MGP_C57BL6NJ_P0043094 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043095.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106728796 106799609 + MGP_C57BL6NJ_P0043095 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043096.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106796710 106805796 + MGP_C57BL6NJ_P0043096 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043097.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106799552 106918331 + MGP_C57BL6NJ_P0043097 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043098.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106799587 106805419 + MGP_C57BL6NJ_P0043098 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043099.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106799606 106912900 + MGP_C57BL6NJ_P0043099 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043100.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106821924 106829367 + MGP_C57BL6NJ_P0043100 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043101.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106824829 106827690 + Scn8a protein_coding retained_intron MGP_C57BL6NJ_T0043102.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106824864 106827537 + Scn8a protein_coding retained_intron MGP_C57BL6NJ_T0043103.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106824993 106872987 + MGP_C57BL6NJ_P0043103 Scn8a protein_coding protein_coding MGP_C57BL6NJ_T0043104.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106836768 106838410 + Scn8a protein_coding retained_intron MGP_C57BL6NJ_T0043105.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106838294 106844565 + Scn8a protein_coding retained_intron MGP_C57BL6NJ_T0043106.1 MGP_C57BL6NJ_G0022776.1 mouse_genomes_project 15 106886883 106900860 + Scn8a protein_coding processed_transcript MGP_C57BL6NJ_T0042338.1 MGP_C57BL6NJ_G0022533.1 mouse_genomes_project 15 85572472 85579183 - MGP_C57BL6NJ_P0042338 Phf5a protein_coding protein_coding MGP_C57BL6NJ_T0042339.1 MGP_C57BL6NJ_G0022533.1 mouse_genomes_project 15 85572957 85578937 - Phf5a protein_coding processed_transcript MGP_C57BL6NJ_T0042296.1 MGP_C57BL6NJ_G0022523.1 mouse_genomes_project 15 85100867 85110998 + MGP_C57BL6NJ_P0042296 Rbx1 protein_coding protein_coding MGP_C57BL6NJ_T0011653.1 MGP_C57BL6NJ_G0009738.1 mouse_genomes_project 15 81663637 81663747 + Gm26329 misc_RNA misc_RNA MGP_C57BL6NJ_T0013417.1 MGP_C57BL6NJ_G0011462.1 mouse_genomes_project 15 88027667 88028004 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041043.1 MGP_C57BL6NJ_G0022130.1 mouse_genomes_project 15 7924885 7961311 - MGP_C57BL6NJ_P0041043 Ttc23l protein_coding protein_coding MGP_C57BL6NJ_T0041044.1 MGP_C57BL6NJ_G0022130.1 mouse_genomes_project 15 7928730 7990450 - MGP_C57BL6NJ_P0041044 Ttc23l protein_coding protein_coding MGP_C57BL6NJ_T0041045.1 MGP_C57BL6NJ_G0022130.1 mouse_genomes_project 15 7968904 7990432 - MGP_C57BL6NJ_P0041045 Ttc23l protein_coding protein_coding MGP_C57BL6NJ_T0042336.1 MGP_C57BL6NJ_G0022531.1 mouse_genomes_project 15 85547643 85548000 - MGP_C57BL6NJ_P0042336 Gm8444 protein_coding protein_coding MGP_C57BL6NJ_T0001074.1 MGP_C57BL6NJ_G0000983.1 mouse_genomes_project 15 85248577 85249432 - TEC TEC MGP_C57BL6NJ_T0041107.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21230794 22201404 + MGP_C57BL6NJ_P0041107 Cdh18 protein_coding protein_coding MGP_C57BL6NJ_T0041108.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21795066 21950558 + Cdh18 protein_coding retained_intron MGP_C57BL6NJ_T0041109.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21795074 22262147 + Cdh18 protein_coding retained_intron MGP_C57BL6NJ_T0041110.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21795074 22283830 + MGP_C57BL6NJ_P0041110 Cdh18 protein_coding protein_coding MGP_C57BL6NJ_T0041111.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21949118 22283477 + MGP_C57BL6NJ_P0041111 Cdh18 protein_coding protein_coding MGP_C57BL6NJ_T0041112.1 MGP_C57BL6NJ_G0022152.1 mouse_genomes_project 15 21949280 22283441 + MGP_C57BL6NJ_P0041112 Cdh18 protein_coding protein_coding MGP_C57BL6NJ_T0042468.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87760042 87772719 + MGP_C57BL6NJ_P0042468 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042469.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87769454 87841068 + MGP_C57BL6NJ_P0042469 Mpped1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042470.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87772526 87838888 + MGP_C57BL6NJ_P0042470 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042471.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87772601 87838984 + MGP_C57BL6NJ_P0042471 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042472.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87772622 87841062 + MGP_C57BL6NJ_P0042472 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042473.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87778034 87834651 + MGP_C57BL6NJ_P0042473 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042474.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87781494 87838869 + MGP_C57BL6NJ_P0042474 Mpped1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042475.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87817481 87838889 + MGP_C57BL6NJ_P0042475 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042476.1 MGP_C57BL6NJ_G0022580.1 mouse_genomes_project 15 87817514 87837097 + MGP_C57BL6NJ_P0042476 Mpped1 protein_coding protein_coding MGP_C57BL6NJ_T0042289.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016343 85054005 + Xpnpep3 protein_coding retained_intron MGP_C57BL6NJ_T0042290.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016363 85032640 + Xpnpep3 protein_coding retained_intron MGP_C57BL6NJ_T0042291.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016389 85081007 + MGP_C57BL6NJ_P0042291 Xpnpep3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042292.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016390 85064777 + MGP_C57BL6NJ_P0042292 Xpnpep3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042293.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016417 85081007 + MGP_C57BL6NJ_P0042293 Xpnpep3 protein_coding protein_coding MGP_C57BL6NJ_T0042294.1 MGP_C57BL6NJ_G0022521.1 mouse_genomes_project 15 85016426 85053589 + Xpnpep3 protein_coding processed_transcript MGP_C57BL6NJ_T0043121.1 MGP_C57BL6NJ_G0022781.1 mouse_genomes_project 15 107114412 107122875 + MGP_C57BL6NJ_P0043121 Grasp protein_coding protein_coding MGP_C57BL6NJ_T0003759.1 MGP_C57BL6NJ_G0003396.1 mouse_genomes_project 15 69027600 69029101 + Gm17035 antisense antisense MGP_C57BL6NJ_T0042809.1 MGP_C57BL6NJ_G0022684.1 mouse_genomes_project 15 102531600 102534814 - MGP_C57BL6NJ_P0042809 Amigo2 protein_coding protein_coding MGP_C57BL6NJ_T0041713.1 MGP_C57BL6NJ_G0022363.1 mouse_genomes_project 15 78516916 78538624 - MGP_C57BL6NJ_P0041713 Top1mt protein_coding protein_coding MGP_C57BL6NJ_T0042063.1 MGP_C57BL6NJ_G0022464.1 mouse_genomes_project 15 82192776 82197432 - MGP_C57BL6NJ_P0042063 Lgals2 protein_coding protein_coding MGP_C57BL6NJ_T0001078.1 MGP_C57BL6NJ_G0000987.1 mouse_genomes_project 15 109192455 109193482 - TEC TEC MGP_C57BL6NJ_T0042547.1 MGP_C57BL6NJ_G0022607.1 mouse_genomes_project 15 89991694 90021839 + MGP_C57BL6NJ_P0042547 Ttc38 protein_coding protein_coding MGP_C57BL6NJ_T0042548.1 MGP_C57BL6NJ_G0022607.1 mouse_genomes_project 15 89991732 90020289 + Ttc38 protein_coding processed_transcript MGP_C57BL6NJ_T0042549.1 MGP_C57BL6NJ_G0022607.1 mouse_genomes_project 15 89991732 90004806 + MGP_C57BL6NJ_P0042549 Ttc38 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010264.1 MGP_C57BL6NJ_G0008349.1 mouse_genomes_project 15 78957048 78957109 - Mir6952 miRNA miRNA MGP_C57BL6NJ_T0042275.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84595773 84692040 - MGP_C57BL6NJ_P0042275 Mkl1 protein_coding protein_coding MGP_C57BL6NJ_T0042276.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84599486 84631049 - MGP_C57BL6NJ_P0042276 Mkl1 protein_coding protein_coding MGP_C57BL6NJ_T0042277.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84600395 84601821 - Mkl1 protein_coding retained_intron MGP_C57BL6NJ_T0042278.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84603870 84604935 - Mkl1 protein_coding retained_intron MGP_C57BL6NJ_T0042279.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84606121 84607589 - Mkl1 protein_coding retained_intron MGP_C57BL6NJ_T0042280.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84611606 84781606 - Mkl1 protein_coding retained_intron MGP_C57BL6NJ_T0042281.1 MGP_C57BL6NJ_G0022517.1 mouse_genomes_project 15 84630635 84781400 - Mkl1 protein_coding retained_intron MGP_C57BL6NJ_T0043058.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106400158 106420931 - MGP_C57BL6NJ_P0043058 Pou6f1 protein_coding protein_coding MGP_C57BL6NJ_T0043059.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106400160 106430548 - MGP_C57BL6NJ_P0043059 Pou6f1 protein_coding protein_coding MGP_C57BL6NJ_T0043060.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106400160 106418743 - MGP_C57BL6NJ_P0043060 Pou6f1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043061.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106400160 106413099 - MGP_C57BL6NJ_P0043061 Pou6f1 protein_coding protein_coding MGP_C57BL6NJ_T0043062.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106400163 106407669 - Pou6f1 protein_coding retained_intron MGP_C57BL6NJ_T0043063.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106403089 106421945 - MGP_C57BL6NJ_P0043063 Pou6f1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043064.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106403089 106421945 - MGP_C57BL6NJ_P0043064 Pou6f1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043065.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106413024 106418846 - Pou6f1 protein_coding retained_intron MGP_C57BL6NJ_T0043066.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106413349 106430344 - Pou6f1 protein_coding processed_transcript MGP_C57BL6NJ_T0043067.1 MGP_C57BL6NJ_G0022769.1 mouse_genomes_project 15 106415358 106430344 - Pou6f1 protein_coding processed_transcript MGP_C57BL6NJ_T0101290.1 MGP_C57BL6NJ_G0039336.1 mouse_genomes_project 15 54699755 54699887 - Gm23200 snoRNA snoRNA MGP_C57BL6NJ_T0042173.1 MGP_C57BL6NJ_G0022493.1 mouse_genomes_project 15 83132042 83163574 + MGP_C57BL6NJ_P0042173 Gtpbp1 protein_coding protein_coding MGP_C57BL6NJ_T0041292.1 MGP_C57BL6NJ_G0022219.1 mouse_genomes_project 15 38952980 38975334 - MGP_C57BL6NJ_P0041292 Slc25a32 protein_coding protein_coding MGP_C57BL6NJ_T0099973.1 MGP_C57BL6NJ_G0038019.1 mouse_genomes_project 15 50257240 50257346 + Gm23848 snRNA snRNA MGP_C57BL6NJ_T0042705.1 MGP_C57BL6NJ_G0022650.1 mouse_genomes_project 15 94082975 94089235 + MGP_C57BL6NJ_P0042705 Acr protein_coding protein_coding MGP_C57BL6NJ_T0102863.1 MGP_C57BL6NJ_G0040657.1 mouse_genomes_project 15 36008 37835 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041293.1 MGP_C57BL6NJ_G0022220.1 mouse_genomes_project 15 38975482 39011420 + MGP_C57BL6NJ_P0041293 Dcaf13 protein_coding protein_coding MGP_C57BL6NJ_T0042865.1 MGP_C57BL6NJ_G0022695.1 mouse_genomes_project 15 103469276 103509753 + MGP_C57BL6NJ_P0042865 Pfkm protein_coding protein_coding MGP_C57BL6NJ_T0041390.1 MGP_C57BL6NJ_G0022261.1 mouse_genomes_project 15 56500852 56732187 + MGP_C57BL6NJ_P0041390 Col14a1 protein_coding protein_coding MGP_C57BL6NJ_T0041391.1 MGP_C57BL6NJ_G0022261.1 mouse_genomes_project 15 56500852 56732188 + MGP_C57BL6NJ_P0041391 Col14a1 protein_coding protein_coding MGP_C57BL6NJ_T0041392.1 MGP_C57BL6NJ_G0022261.1 mouse_genomes_project 15 56500853 56732186 + MGP_C57BL6NJ_P0041392 Col14a1 protein_coding protein_coding MGP_C57BL6NJ_T0041393.1 MGP_C57BL6NJ_G0022261.1 mouse_genomes_project 15 56657362 56731074 + MGP_C57BL6NJ_P0041393 Col14a1 protein_coding protein_coding MGP_C57BL6NJ_T0043149.1 MGP_C57BL6NJ_G0022803.1 mouse_genomes_project 15 107807373 107814823 - MGP_C57BL6NJ_P0043149 Krt2 protein_coding protein_coding MGP_C57BL6NJ_T0043248.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108615808 108720131 - MGP_C57BL6NJ_P0043248 protein_coding protein_coding MGP_C57BL6NJ_T0043249.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108618324 108618714 - MGP_C57BL6NJ_P0043249 protein_coding protein_coding MGP_C57BL6NJ_T0043250.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108618324 108720508 - MGP_C57BL6NJ_P0043250 protein_coding protein_coding MGP_C57BL6NJ_T0043251.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108623260 108720497 - MGP_C57BL6NJ_P0043251 protein_coding protein_coding MGP_C57BL6NJ_T0043252.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108626331 108720511 - MGP_C57BL6NJ_P0043252 protein_coding protein_coding MGP_C57BL6NJ_T0043253.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108627011 108720146 - MGP_C57BL6NJ_P0043253 protein_coding protein_coding MGP_C57BL6NJ_T0043254.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108635459 108720496 - protein_coding retained_intron MGP_C57BL6NJ_T0043255.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108637523 108720522 - MGP_C57BL6NJ_P0043255 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043256.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108637575 108719980 - MGP_C57BL6NJ_P0043256 protein_coding protein_coding MGP_C57BL6NJ_T0043257.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108641129 108720125 - MGP_C57BL6NJ_P0043257 protein_coding protein_coding MGP_C57BL6NJ_T0043258.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108641129 108720504 - MGP_C57BL6NJ_P0043258 protein_coding protein_coding MGP_C57BL6NJ_T0043259.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108653786 108720128 - protein_coding retained_intron MGP_C57BL6NJ_T0043260.1 MGP_C57BL6NJ_G0022836.1 mouse_genomes_project 15 108687077 108720522 - protein_coding retained_intron MGP_C57BL6NJ_T0003781.1 MGP_C57BL6NJ_G0003412.1 mouse_genomes_project 15 103468166 103470655 + Gm26513 antisense antisense MGP_C57BL6NJ_T0041187.1 MGP_C57BL6NJ_G0022184.1 mouse_genomes_project 15 33894331 33904066 - MGP_C57BL6NJ_P0041187 9430069I07Rik protein_coding protein_coding MGP_C57BL6NJ_T0099982.1 MGP_C57BL6NJ_G0038028.1 mouse_genomes_project 15 65952198 65952303 + Gm25628 snRNA snRNA MGP_C57BL6NJ_T0041378.1 MGP_C57BL6NJ_G0022257.1 mouse_genomes_project 15 56188733 56263898 - MGP_C57BL6NJ_P0041378 Taf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041379.1 MGP_C57BL6NJ_G0022257.1 mouse_genomes_project 15 56188736 56244855 - MGP_C57BL6NJ_P0041379 Taf2 protein_coding protein_coding MGP_C57BL6NJ_T0041097.1 MGP_C57BL6NJ_G0022147.1 mouse_genomes_project 15 10648212 10809434 - MGP_C57BL6NJ_P0041097 Cdh6 protein_coding protein_coding MGP_C57BL6NJ_T0010309.1 MGP_C57BL6NJ_G0008394.1 mouse_genomes_project 15 107539322 107539451 + Gm44460 miRNA miRNA MGP_C57BL6NJ_T0043043.1 MGP_C57BL6NJ_G0022763.1 mouse_genomes_project 15 106145456 106180633 + MGP_C57BL6NJ_P0043043 Higd1c protein_coding protein_coding MGP_C57BL6NJ_T0043044.1 MGP_C57BL6NJ_G0022763.1 mouse_genomes_project 15 106145459 106180738 + MGP_C57BL6NJ_P0043044 Higd1c protein_coding protein_coding MGP_C57BL6NJ_T0006979.1 MGP_C57BL6NJ_G0005751.1 mouse_genomes_project 15 107111401 107114327 - A330009N23Rik lincRNA lincRNA MGP_C57BL6NJ_T0013398.1 MGP_C57BL6NJ_G0011443.1 mouse_genomes_project 15 55903264 55904246 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003764.1 MGP_C57BL6NJ_G0003400.1 mouse_genomes_project 15 78521288 78523411 + Gm15945 antisense antisense MGP_C57BL6NJ_T0003747.1 MGP_C57BL6NJ_G0003386.1 mouse_genomes_project 15 3748147 3799640 - Gm2245 antisense antisense MGP_C57BL6NJ_T0010248.1 MGP_C57BL6NJ_G0008333.1 mouse_genomes_project 15 35925476 35925595 - Mir8097 miRNA miRNA MGP_C57BL6NJ_T0040984.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6359862 6405137 + Nadk2 protein_coding processed_transcript MGP_C57BL6NJ_T0040985.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6359862 6405137 + MGP_C57BL6NJ_P0040985 Nadk2 protein_coding protein_coding MGP_C57BL6NJ_T0040986.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6359862 6405137 + MGP_C57BL6NJ_P0040986 Nadk2 protein_coding protein_coding MGP_C57BL6NJ_T0040987.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6359862 6405137 + MGP_C57BL6NJ_P0040987 Nadk2 protein_coding protein_coding MGP_C57BL6NJ_T0040988.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6360281 6404247 + Nadk2 protein_coding processed_transcript MGP_C57BL6NJ_T0040989.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6360287 6401562 + Nadk2 protein_coding processed_transcript MGP_C57BL6NJ_T0040990.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6377732 6401227 + Nadk2 protein_coding processed_transcript MGP_C57BL6NJ_T0040991.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6392788 6401568 + MGP_C57BL6NJ_P0040991 Nadk2 protein_coding protein_coding MGP_C57BL6NJ_T0040992.1 MGP_C57BL6NJ_G0022116.1 mouse_genomes_project 15 6395620 6401160 + Nadk2 protein_coding retained_intron MGP_C57BL6NJ_T0042782.1 MGP_C57BL6NJ_G0022670.1 mouse_genomes_project 15 99524046 99539201 + Irak4 protein_coding retained_intron MGP_C57BL6NJ_T0042783.1 MGP_C57BL6NJ_G0022670.1 mouse_genomes_project 15 99524065 99571407 + MGP_C57BL6NJ_P0042783 Irak4 protein_coding protein_coding MGP_C57BL6NJ_T0042784.1 MGP_C57BL6NJ_G0022670.1 mouse_genomes_project 15 99524409 99551694 + MGP_C57BL6NJ_P0042784 Irak4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041353.1 MGP_C57BL6NJ_G0022244.1 mouse_genomes_project 15 52820161 52828889 + MGP_C57BL6NJ_P0041353 Utp23 protein_coding protein_coding MGP_C57BL6NJ_T0041354.1 MGP_C57BL6NJ_G0022244.1 mouse_genomes_project 15 52820210 52826358 + MGP_C57BL6NJ_P0041354 Utp23 protein_coding protein_coding MGP_C57BL6NJ_T0041355.1 MGP_C57BL6NJ_G0022244.1 mouse_genomes_project 15 52820237 52826353 + MGP_C57BL6NJ_P0041355 Utp23 protein_coding protein_coding MGP_C57BL6NJ_T0041356.1 MGP_C57BL6NJ_G0022244.1 mouse_genomes_project 15 52820474 52826352 + MGP_C57BL6NJ_P0041356 Utp23 protein_coding protein_coding MGP_C57BL6NJ_T0042947.1 MGP_C57BL6NJ_G0022731.1 mouse_genomes_project 15 104642067 104645256 - MGP_C57BL6NJ_P0042947 C1ql4 protein_coding protein_coding MGP_C57BL6NJ_T0041105.1 MGP_C57BL6NJ_G0022150.1 mouse_genomes_project 15 19142124 19143895 - MGP_C57BL6NJ_P0041105 Acot10 protein_coding protein_coding MGP_C57BL6NJ_T0003792.1 MGP_C57BL6NJ_G0003422.1 mouse_genomes_project 15 106423406 106425275 + antisense antisense MGP_C57BL6NJ_T0042460.1 MGP_C57BL6NJ_G0022578.1 mouse_genomes_project 15 87537362 87557461 - MGP_C57BL6NJ_P0042460 Ttll12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042461.1 MGP_C57BL6NJ_G0022578.1 mouse_genomes_project 15 87537887 87557461 - MGP_C57BL6NJ_P0042461 Ttll12 protein_coding protein_coding MGP_C57BL6NJ_T0042462.1 MGP_C57BL6NJ_G0022578.1 mouse_genomes_project 15 87544008 87549134 - Ttll12 protein_coding retained_intron MGP_C57BL6NJ_T0041050.1 MGP_C57BL6NJ_G0022133.1 mouse_genomes_project 15 8455012 8473058 + MGP_C57BL6NJ_P0041050 Amacr protein_coding protein_coding MGP_C57BL6NJ_T0043010.1 MGP_C57BL6NJ_G0022749.1 mouse_genomes_project 15 105358512 105371040 + MGP_C57BL6NJ_P0043010 Smarcd1 protein_coding protein_coding MGP_C57BL6NJ_T0043189.1 MGP_C57BL6NJ_G0022823.1 mouse_genomes_project 15 108379246 108386318 + Pfdn5 protein_coding retained_intron MGP_C57BL6NJ_T0043190.1 MGP_C57BL6NJ_G0022823.1 mouse_genomes_project 15 108379267 108386259 + MGP_C57BL6NJ_P0043190 Pfdn5 protein_coding protein_coding MGP_C57BL6NJ_T0043191.1 MGP_C57BL6NJ_G0022823.1 mouse_genomes_project 15 108379267 108386396 + MGP_C57BL6NJ_P0043191 Pfdn5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043192.1 MGP_C57BL6NJ_G0022823.1 mouse_genomes_project 15 108379267 108386405 + MGP_C57BL6NJ_P0043192 Pfdn5 protein_coding protein_coding MGP_C57BL6NJ_T0043193.1 MGP_C57BL6NJ_G0022823.1 mouse_genomes_project 15 108379469 108386372 + MGP_C57BL6NJ_P0043193 Pfdn5 protein_coding protein_coding MGP_C57BL6NJ_T0041442.1 MGP_C57BL6NJ_G0022277.1 mouse_genomes_project 15 59720261 59729577 - MGP_C57BL6NJ_P0041442 Klhl38 protein_coding protein_coding MGP_C57BL6NJ_T0042477.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87849204 88050470 - MGP_C57BL6NJ_P0042477 Efcab6 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042478.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87849210 88062459 - MGP_C57BL6NJ_P0042478 Efcab6 protein_coding protein_coding MGP_C57BL6NJ_T0042479.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87849212 87903807 - Efcab6 protein_coding processed_transcript MGP_C57BL6NJ_T0042480.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87849265 87922587 - Efcab6 protein_coding retained_intron MGP_C57BL6NJ_T0042481.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87854870 87868140 - Efcab6 protein_coding processed_transcript MGP_C57BL6NJ_T0042482.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87910330 87933089 - MGP_C57BL6NJ_P0042482 Efcab6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042483.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87951672 87954317 - Efcab6 protein_coding processed_transcript MGP_C57BL6NJ_T0042484.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 87959017 87975517 - Efcab6 protein_coding processed_transcript MGP_C57BL6NJ_T0042485.1 MGP_C57BL6NJ_G0022581.1 mouse_genomes_project 15 88016031 88062489 - Efcab6 protein_coding processed_transcript MGP_C57BL6NJ_T0041387.1 MGP_C57BL6NJ_G0022260.1 mouse_genomes_project 15 56288258 56441317 + MGP_C57BL6NJ_P0041387 Deptor protein_coding protein_coding MGP_C57BL6NJ_T0041388.1 MGP_C57BL6NJ_G0022260.1 mouse_genomes_project 15 56288365 56398890 + MGP_C57BL6NJ_P0041388 Deptor protein_coding protein_coding MGP_C57BL6NJ_T0041389.1 MGP_C57BL6NJ_G0022260.1 mouse_genomes_project 15 56309375 56436249 + MGP_C57BL6NJ_P0041389 Deptor protein_coding protein_coding MGP_C57BL6NJ_T0043108.1 MGP_C57BL6NJ_G0022778.1 mouse_genomes_project 15 106997935 107002203 + MGP_C57BL6NJ_P0043108 Ankrd33 protein_coding protein_coding MGP_C57BL6NJ_T0040910.1 MGP_C57BL6NJ_G0022096.1 mouse_genomes_project 15 2085628 2098670 - MGP_C57BL6NJ_P0040910 Card6 protein_coding protein_coding MGP_C57BL6NJ_T0040911.1 MGP_C57BL6NJ_G0022096.1 mouse_genomes_project 15 2095244 2098615 - MGP_C57BL6NJ_P0040911 Card6 protein_coding protein_coding MGP_C57BL6NJ_T0006970.1 MGP_C57BL6NJ_G0005745.1 mouse_genomes_project 15 101317978 101481994 - 2610037D02Rik lincRNA lincRNA MGP_C57BL6NJ_T0006974.1 MGP_C57BL6NJ_G0005745.1 mouse_genomes_project 15 101479884 101482881 - 2610037D02Rik lincRNA lincRNA MGP_C57BL6NJ_T0043246.1 MGP_C57BL6NJ_G0022835.1 mouse_genomes_project 15 108613705 108720125 - MGP_C57BL6NJ_P0043246 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042016.1 MGP_C57BL6NJ_G0022444.1 mouse_genomes_project 15 81172041 81183868 - MGP_C57BL6NJ_P0042016 Eif3d protein_coding protein_coding MGP_C57BL6NJ_T0041584.1 MGP_C57BL6NJ_G0022325.1 mouse_genomes_project 15 75709167 75941745 - MGP_C57BL6NJ_P0041584 Ptk2 protein_coding protein_coding MGP_C57BL6NJ_T0041585.1 MGP_C57BL6NJ_G0022325.1 mouse_genomes_project 15 75720020 75875059 - MGP_C57BL6NJ_P0041585 Ptk2 protein_coding protein_coding MGP_C57BL6NJ_T0040909.1 MGP_C57BL6NJ_G0022095.1 mouse_genomes_project 15 1964391 2045218 - MGP_C57BL6NJ_P0040909 C7 protein_coding protein_coding MGP_C57BL6NJ_T0003755.1 MGP_C57BL6NJ_G0003392.1 mouse_genomes_project 15 59098915 59101019 - 9330154K18Rik antisense antisense MGP_C57BL6NJ_T0041075.1 MGP_C57BL6NJ_G0022142.1 mouse_genomes_project 15 9905303 9905765 - MGP_C57BL6NJ_P0041075 1810049J17Rik protein_coding protein_coding MGP_C57BL6NJ_T0003757.1 MGP_C57BL6NJ_G0003394.1 mouse_genomes_project 15 68343978 68347305 + Gm27242 antisense antisense MGP_C57BL6NJ_T0006925.1 MGP_C57BL6NJ_G0005718.1 mouse_genomes_project 15 40463043 40478999 - Gm16294 lincRNA lincRNA MGP_C57BL6NJ_T0011640.1 MGP_C57BL6NJ_G0009725.1 mouse_genomes_project 15 727458 727728 + Gm23228 misc_RNA misc_RNA MGP_C57BL6NJ_T0010275.1 MGP_C57BL6NJ_G0008360.1 mouse_genomes_project 15 83025541 83025667 - Gm27903 miRNA miRNA MGP_C57BL6NJ_T0003772.1 MGP_C57BL6NJ_G0003405.1 mouse_genomes_project 15 86763870 86772021 + Gm20324 antisense antisense MGP_C57BL6NJ_T0041195.1 MGP_C57BL6NJ_G0022187.1 mouse_genomes_project 15 34060231 34072762 - MGP_C57BL6NJ_P0041195 Rida protein_coding protein_coding MGP_C57BL6NJ_T0041196.1 MGP_C57BL6NJ_G0022187.1 mouse_genomes_project 15 34060234 34067459 - Rida protein_coding retained_intron MGP_C57BL6NJ_T0041197.1 MGP_C57BL6NJ_G0022187.1 mouse_genomes_project 15 34061104 34072678 - Rida protein_coding retained_intron MGP_C57BL6NJ_T0041198.1 MGP_C57BL6NJ_G0022187.1 mouse_genomes_project 15 34061814 34067345 - Rida protein_coding processed_transcript MGP_C57BL6NJ_T0042078.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82305652 82326677 + Triobp protein_coding processed_transcript MGP_C57BL6NJ_T0042079.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82305652 82365168 + MGP_C57BL6NJ_P0042079 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042080.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82305652 82364866 + MGP_C57BL6NJ_P0042080 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042081.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82306173 82311096 + Triobp protein_coding retained_intron MGP_C57BL6NJ_T0042082.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82342346 82365165 + MGP_C57BL6NJ_P0042082 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042083.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82342361 82365163 + MGP_C57BL6NJ_P0042083 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042084.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82342382 82354165 + MGP_C57BL6NJ_P0042084 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042085.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82343010 82350744 + MGP_C57BL6NJ_P0042085 Triobp protein_coding protein_coding MGP_C57BL6NJ_T0042086.1 MGP_C57BL6NJ_G0022469.1 mouse_genomes_project 15 82361487 82364003 + Triobp protein_coding processed_transcript MGP_C57BL6NJ_T0041116.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24646812 24847571 + MGP_C57BL6NJ_P0041116 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041117.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24646830 24811536 + MGP_C57BL6NJ_P0041117 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041118.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24646836 24732384 + Myo10 protein_coding retained_intron MGP_C57BL6NJ_T0041119.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24702310 24755237 + Myo10 protein_coding processed_transcript MGP_C57BL6NJ_T0041120.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24745389 24755288 + Myo10 protein_coding retained_intron MGP_C57BL6NJ_T0041121.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24773705 24812966 + MGP_C57BL6NJ_P0041121 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041122.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24784983 24811546 + MGP_C57BL6NJ_P0041122 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041123.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24790738 24808068 + MGP_C57BL6NJ_P0041123 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041124.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24790758 24812181 + MGP_C57BL6NJ_P0041124 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041125.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24800530 24808317 + MGP_C57BL6NJ_P0041125 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041126.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24805958 24812829 + MGP_C57BL6NJ_P0041126 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041127.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24806277 24847577 + MGP_C57BL6NJ_P0041127 Myo10 protein_coding protein_coding MGP_C57BL6NJ_T0041128.1 MGP_C57BL6NJ_G0022156.1 mouse_genomes_project 15 24811961 24813140 + Myo10 protein_coding retained_intron MGP_C57BL6NJ_T0041569.1 MGP_C57BL6NJ_G0022318.1 mouse_genomes_project 15 71097690 71275752 + MGP_C57BL6NJ_P0041569 Khdrbs3 protein_coding protein_coding MGP_C57BL6NJ_T0041113.1 MGP_C57BL6NJ_G0022153.1 mouse_genomes_project 15 24113986 24125616 - MGP_C57BL6NJ_P0041113 9230109A22Rik protein_coding protein_coding MGP_C57BL6NJ_T0102876.1 MGP_C57BL6NJ_G0040670.1 mouse_genomes_project 15 78119979 78122155 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0042532.1 MGP_C57BL6NJ_G0022603.1 mouse_genomes_project 15 89652421 89700048 - MGP_C57BL6NJ_P0042532 Wnt7b protein_coding protein_coding MGP_C57BL6NJ_T0042533.1 MGP_C57BL6NJ_G0022603.1 mouse_genomes_project 15 89652425 89704261 - MGP_C57BL6NJ_P0042533 Wnt7b protein_coding protein_coding MGP_C57BL6NJ_T0003784.1 MGP_C57BL6NJ_G0003415.1 mouse_genomes_project 15 105041294 105050879 + Nckap5los antisense antisense MGP_C57BL6NJ_T0043109.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107010601 107029263 + MGP_C57BL6NJ_P0043109 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043110.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107010616 107018346 + MGP_C57BL6NJ_P0043110 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043111.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107010630 107027525 + MGP_C57BL6NJ_P0043111 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043112.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107010630 107018963 + MGP_C57BL6NJ_P0043112 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043113.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107010653 107027524 + MGP_C57BL6NJ_P0043113 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043114.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107011001 107027526 + MGP_C57BL6NJ_P0043114 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043115.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107011003 107027524 + MGP_C57BL6NJ_P0043115 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043116.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107016980 107019114 + MGP_C57BL6NJ_P0043116 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043117.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107017784 107029263 + MGP_C57BL6NJ_P0043117 Acvrl1 protein_coding protein_coding MGP_C57BL6NJ_T0043118.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107019308 107020684 + Acvrl1 protein_coding retained_intron MGP_C57BL6NJ_T0043119.1 MGP_C57BL6NJ_G0022779.1 mouse_genomes_project 15 107021251 107026510 + Acvrl1 protein_coding processed_transcript MGP_C57BL6NJ_T0043146.1 MGP_C57BL6NJ_G0022801.1 mouse_genomes_project 15 107757412 107767716 - MGP_C57BL6NJ_P0043146 Krt72 protein_coding protein_coding MGP_C57BL6NJ_T0043147.1 MGP_C57BL6NJ_G0022801.1 mouse_genomes_project 15 107757573 107759934 - Krt72 protein_coding processed_transcript MGP_C57BL6NJ_T0041037.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909157 7916829 + MGP_C57BL6NJ_P0041037 Rad1 protein_coding protein_coding MGP_C57BL6NJ_T0041038.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909188 7916824 + Rad1 protein_coding retained_intron MGP_C57BL6NJ_T0041039.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909208 7923847 + MGP_C57BL6NJ_P0041039 Rad1 protein_coding protein_coding MGP_C57BL6NJ_T0041040.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909219 7913487 + MGP_C57BL6NJ_P0041040 Rad1 protein_coding protein_coding MGP_C57BL6NJ_T0041041.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909614 7916503 + MGP_C57BL6NJ_P0041041 Rad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041042.1 MGP_C57BL6NJ_G0022129.1 mouse_genomes_project 15 7909748 7916814 + MGP_C57BL6NJ_P0041042 Rad1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042183.1 MGP_C57BL6NJ_G0022495.1 mouse_genomes_project 15 83204653 83221020 - MGP_C57BL6NJ_P0042183 Dnal4 protein_coding protein_coding MGP_C57BL6NJ_T0042184.1 MGP_C57BL6NJ_G0022495.1 mouse_genomes_project 15 83204656 83221104 - MGP_C57BL6NJ_P0042184 Dnal4 protein_coding protein_coding MGP_C57BL6NJ_T0042185.1 MGP_C57BL6NJ_G0022495.1 mouse_genomes_project 15 83208185 83223609 - Dnal4 protein_coding processed_transcript MGP_C57BL6NJ_T0042186.1 MGP_C57BL6NJ_G0022495.1 mouse_genomes_project 15 83221208 83224486 - Dnal4 protein_coding processed_transcript MGP_C57BL6NJ_T0013423.1 MGP_C57BL6NJ_G0011468.1 mouse_genomes_project 15 96553460 96553997 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102176.1 MGP_C57BL6NJ_G0040195.1 mouse_genomes_project 15 32933613 32936900 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102177.1 MGP_C57BL6NJ_G0040195.1 mouse_genomes_project 15 32936129 32936863 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0041407.1 MGP_C57BL6NJ_G0022265.1 mouse_genomes_project 15 57929059 57965651 - MGP_C57BL6NJ_P0041407 Has2 protein_coding protein_coding MGP_C57BL6NJ_T0099981.1 MGP_C57BL6NJ_G0038027.1 mouse_genomes_project 15 65258715 65258778 - Gm25702 snRNA snRNA MGP_C57BL6NJ_T0042232.1 MGP_C57BL6NJ_G0022504.1 mouse_genomes_project 15 83615197 83646639 + MGP_C57BL6NJ_P0042232 Tab1 protein_coding protein_coding MGP_C57BL6NJ_T0041960.1 MGP_C57BL6NJ_G0022421.1 mouse_genomes_project 15 79854179 79880361 + MGP_C57BL6NJ_P0041960 Zfp7 protein_coding protein_coding MGP_C57BL6NJ_T0006908.1 MGP_C57BL6NJ_G0005705.1 mouse_genomes_project 15 948739 969502 + Gm2093 lincRNA lincRNA MGP_C57BL6NJ_T0042451.1 MGP_C57BL6NJ_G0022573.1 mouse_genomes_project 15 87316628 87384589 - MGP_C57BL6NJ_P0042451 Pacsin2 protein_coding protein_coding MGP_C57BL6NJ_T0042452.1 MGP_C57BL6NJ_G0022573.1 mouse_genomes_project 15 87316628 87419037 - MGP_C57BL6NJ_P0042452 Pacsin2 protein_coding protein_coding MGP_C57BL6NJ_T0042453.1 MGP_C57BL6NJ_G0022573.1 mouse_genomes_project 15 87323382 87419001 - MGP_C57BL6NJ_P0042453 Pacsin2 protein_coding protein_coding MGP_C57BL6NJ_T0099958.1 MGP_C57BL6NJ_G0038004.1 mouse_genomes_project 15 16246590 16246697 - Gm24713 snRNA snRNA MGP_C57BL6NJ_T0042951.1 MGP_C57BL6NJ_G0022734.1 mouse_genomes_project 15 104811650 104842009 + MGP_C57BL6NJ_P0042951 Kcnh3 protein_coding protein_coding MGP_C57BL6NJ_T0011654.1 MGP_C57BL6NJ_G0009739.1 mouse_genomes_project 15 82466279 82466514 - Gm25072 misc_RNA misc_RNA MGP_C57BL6NJ_T0042233.1 MGP_C57BL6NJ_G0022505.1 mouse_genomes_project 15 83662556 83707828 + MGP_C57BL6NJ_P0042233 Mgat3 protein_coding protein_coding MGP_C57BL6NJ_T0041644.1 MGP_C57BL6NJ_G0022344.1 mouse_genomes_project 15 77367590 77375507 - MGP_C57BL6NJ_P0041644 D730001G18Rik protein_coding protein_coding MGP_C57BL6NJ_T0041645.1 MGP_C57BL6NJ_G0022344.1 mouse_genomes_project 15 77367591 77375542 - MGP_C57BL6NJ_P0041645 D730001G18Rik protein_coding protein_coding MGP_C57BL6NJ_T0043205.1 MGP_C57BL6NJ_G0022826.1 mouse_genomes_project 15 108404351 108413936 - MGP_C57BL6NJ_P0043205 Sp7 protein_coding protein_coding MGP_C57BL6NJ_T0042387.1 MGP_C57BL6NJ_G0022549.1 mouse_genomes_project 15 86022619 86042376 + MGP_C57BL6NJ_P0042387 Sept3 protein_coding protein_coding MGP_C57BL6NJ_T0042388.1 MGP_C57BL6NJ_G0022549.1 mouse_genomes_project 15 86022931 86039991 + MGP_C57BL6NJ_P0042388 Sept3 protein_coding protein_coding MGP_C57BL6NJ_T0041462.1 MGP_C57BL6NJ_G0022289.1 mouse_genomes_project 15 60810229 60853560 - MGP_C57BL6NJ_P0041462 E430025E21Rik protein_coding protein_coding MGP_C57BL6NJ_T0013372.1 MGP_C57BL6NJ_G0011417.1 mouse_genomes_project 15 6223672 6224492 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011661.1 MGP_C57BL6NJ_G0009746.1 mouse_genomes_project 15 109075603 109075672 + Gm27337 misc_RNA misc_RNA MGP_C57BL6NJ_T0013399.1 MGP_C57BL6NJ_G0011444.1 mouse_genomes_project 15 61503567 61504017 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041583.1 MGP_C57BL6NJ_G0022324.1 mouse_genomes_project 15 75594659 75686812 - MGP_C57BL6NJ_P0041583 Ago2 protein_coding protein_coding MGP_C57BL6NJ_T0041033.1 MGP_C57BL6NJ_G0022128.1 mouse_genomes_project 15 7896705 7909087 - MGP_C57BL6NJ_P0041033 Brix1 protein_coding protein_coding MGP_C57BL6NJ_T0041034.1 MGP_C57BL6NJ_G0022128.1 mouse_genomes_project 15 7901925 7908525 - MGP_C57BL6NJ_P0041034 Brix1 protein_coding protein_coding MGP_C57BL6NJ_T0041035.1 MGP_C57BL6NJ_G0022128.1 mouse_genomes_project 15 7902296 7909049 - MGP_C57BL6NJ_P0041035 Brix1 protein_coding protein_coding MGP_C57BL6NJ_T0041036.1 MGP_C57BL6NJ_G0022128.1 mouse_genomes_project 15 7902738 7909027 - MGP_C57BL6NJ_P0041036 Brix1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042091.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82416920 82426712 - MGP_C57BL6NJ_P0042091 Ankrd54 protein_coding protein_coding MGP_C57BL6NJ_T0042092.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82416930 82426712 - Ankrd54 protein_coding retained_intron MGP_C57BL6NJ_T0042093.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82417400 82419240 - MGP_C57BL6NJ_P0042093 Ankrd54 protein_coding protein_coding MGP_C57BL6NJ_T0042094.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82417594 82419171 - MGP_C57BL6NJ_P0042094 Ankrd54 protein_coding protein_coding MGP_C57BL6NJ_T0042095.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82419212 82426709 - MGP_C57BL6NJ_P0042095 Ankrd54 protein_coding protein_coding MGP_C57BL6NJ_T0042096.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82419241 82426663 - MGP_C57BL6NJ_P0042096 Ankrd54 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042097.1 MGP_C57BL6NJ_G0022472.1 mouse_genomes_project 15 82423447 82426720 - Ankrd54 protein_coding retained_intron MGP_C57BL6NJ_T0010270.1 MGP_C57BL6NJ_G0008355.1 mouse_genomes_project 15 81643028 81643090 + Mir7676-2 miRNA miRNA MGP_C57BL6NJ_T0017919.1 MGP_C57BL6NJ_G0015687.1 mouse_genomes_project 15 59615156 59729461 + Gm15943 processed_transcript processed_transcript MGP_C57BL6NJ_T0098828.1 MGP_C57BL6NJ_G0036892.1 mouse_genomes_project 15 78795842 78798231 + pseudogene pseudogene MGP_C57BL6NJ_T0013402.1 MGP_C57BL6NJ_G0011447.1 mouse_genomes_project 15 64713340 64714510 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041247.1 MGP_C57BL6NJ_G0022205.1 mouse_genomes_project 15 36643847 36653163 - MGP_C57BL6NJ_P0041247 Gm10384 protein_coding protein_coding MGP_C57BL6NJ_T0001069.1 MGP_C57BL6NJ_G0000978.1 mouse_genomes_project 15 63621944 63626024 - TEC TEC MGP_C57BL6NJ_T0043041.1 MGP_C57BL6NJ_G0022761.1 mouse_genomes_project 15 106053393 106062085 + MGP_C57BL6NJ_P0043041 protein_coding protein_coding MGP_C57BL6NJ_T0041932.1 MGP_C57BL6NJ_G0022414.1 mouse_genomes_project 15 79660015 79662931 + MGP_C57BL6NJ_P0041932 Gpt protein_coding protein_coding MGP_C57BL6NJ_T0101271.1 MGP_C57BL6NJ_G0039317.1 mouse_genomes_project 15 26168479 26168610 - Gm23903 snoRNA snoRNA MGP_C57BL6NJ_T0003783.1 MGP_C57BL6NJ_G0003414.1 mouse_genomes_project 15 104044023 104045124 + Gm29331 antisense antisense MGP_C57BL6NJ_T0013368.1 MGP_C57BL6NJ_G0011413.1 mouse_genomes_project 15 2224084 2225319 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042876.1 MGP_C57BL6NJ_G0022701.1 mouse_genomes_project 15 103689399 103700455 - MGP_C57BL6NJ_P0042876 Zfp641 protein_coding protein_coding MGP_C57BL6NJ_T0042877.1 MGP_C57BL6NJ_G0022701.1 mouse_genomes_project 15 103689933 103700408 - MGP_C57BL6NJ_P0042877 Zfp641 protein_coding protein_coding MGP_C57BL6NJ_T0013374.1 MGP_C57BL6NJ_G0011419.1 mouse_genomes_project 15 7676106 7676445 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042284.1 MGP_C57BL6NJ_G0022520.1 mouse_genomes_project 15 84978473 85016237 - MGP_C57BL6NJ_P0042284 St13 protein_coding protein_coding MGP_C57BL6NJ_T0042285.1 MGP_C57BL6NJ_G0022520.1 mouse_genomes_project 15 84980287 85015788 - MGP_C57BL6NJ_P0042285 St13 protein_coding protein_coding MGP_C57BL6NJ_T0042286.1 MGP_C57BL6NJ_G0022520.1 mouse_genomes_project 15 84992888 85015577 - MGP_C57BL6NJ_P0042286 St13 protein_coding protein_coding MGP_C57BL6NJ_T0042287.1 MGP_C57BL6NJ_G0022520.1 mouse_genomes_project 15 85005696 85016271 - MGP_C57BL6NJ_P0042287 St13 protein_coding protein_coding MGP_C57BL6NJ_T0042288.1 MGP_C57BL6NJ_G0022520.1 mouse_genomes_project 15 85008351 85016267 - MGP_C57BL6NJ_P0042288 St13 protein_coding protein_coding MGP_C57BL6NJ_T0042408.1 MGP_C57BL6NJ_G0022562.1 mouse_genomes_project 15 86538710 86540076 - MGP_C57BL6NJ_P0042408 Cyp2d37-ps protein_coding protein_coding MGP_C57BL6NJ_T0042520.1 MGP_C57BL6NJ_G0022595.1 mouse_genomes_project 15 89017604 89063472 - MGP_C57BL6NJ_P0042520 5031439G07Rik protein_coding protein_coding MGP_C57BL6NJ_T0042521.1 MGP_C57BL6NJ_G0022595.1 mouse_genomes_project 15 89021654 89034626 - 5031439G07Rik protein_coding retained_intron MGP_C57BL6NJ_T0042522.1 MGP_C57BL6NJ_G0022595.1 mouse_genomes_project 15 89029330 89064222 - 5031439G07Rik protein_coding processed_transcript MGP_C57BL6NJ_T0043145.1 MGP_C57BL6NJ_G0022800.1 mouse_genomes_project 15 107736442 107744864 - MGP_C57BL6NJ_P0043145 Krt74 protein_coding protein_coding MGP_C57BL6NJ_T0102181.1 MGP_C57BL6NJ_G0040198.1 mouse_genomes_project 15 108731266 108731621 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102182.1 MGP_C57BL6NJ_G0040198.1 mouse_genomes_project 15 108731322 108731473 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0041772.1 MGP_C57BL6NJ_G0022382.1 mouse_genomes_project 15 78980669 78985087 - MGP_C57BL6NJ_P0041772 protein_coding protein_coding MGP_C57BL6NJ_T0041506.1 MGP_C57BL6NJ_G0022302.1 mouse_genomes_project 15 66666872 66902567 - MGP_C57BL6NJ_P0041506 Adcy8 protein_coding protein_coding MGP_C57BL6NJ_T0043143.1 MGP_C57BL6NJ_G0022798.1 mouse_genomes_project 15 107689342 107695197 - MGP_C57BL6NJ_P0043143 protein_coding protein_coding MGP_C57BL6NJ_T0041319.1 MGP_C57BL6NJ_G0022232.1 mouse_genomes_project 15 43677481 43726454 + MGP_C57BL6NJ_P0041319 Emc2 protein_coding protein_coding MGP_C57BL6NJ_T0043316.1 MGP_C57BL6NJ_G0022860.1 mouse_genomes_project 15 109709056 109716708 - MGP_C57BL6NJ_P0043316 Ppp1r1a protein_coding protein_coding MGP_C57BL6NJ_T0101310.1 MGP_C57BL6NJ_G0039356.1 mouse_genomes_project 15 104854108 104854241 - Gm25999 snoRNA snoRNA MGP_C57BL6NJ_T0099989.1 MGP_C57BL6NJ_G0038035.1 mouse_genomes_project 15 79123443 79123548 - Gm25720 snRNA snRNA MGP_C57BL6NJ_T0102870.1 MGP_C57BL6NJ_G0040664.1 mouse_genomes_project 15 78016827 78019993 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099988.1 MGP_C57BL6NJ_G0038034.1 mouse_genomes_project 15 78928586 78928744 + Gm23027 snRNA snRNA MGP_C57BL6NJ_T0043014.1 MGP_C57BL6NJ_G0022751.1 mouse_genomes_project 15 105384634 105388315 + MGP_C57BL6NJ_P0043014 Cox14 protein_coding protein_coding MGP_C57BL6NJ_T0042404.1 MGP_C57BL6NJ_G0022558.1 mouse_genomes_project 15 86246306 86249663 + MGP_C57BL6NJ_P0042404 protein_coding protein_coding MGP_C57BL6NJ_T0003761.1 MGP_C57BL6NJ_G0003398.1 mouse_genomes_project 15 77305499 77306711 + 4933427E11Rik antisense antisense MGP_C57BL6NJ_T0003762.1 MGP_C57BL6NJ_G0003398.1 mouse_genomes_project 15 77305499 77306713 + 4933427E11Rik antisense antisense MGP_C57BL6NJ_T0042402.1 MGP_C57BL6NJ_G0022556.1 mouse_genomes_project 15 86160887 86170187 - MGP_C57BL6NJ_P0042402 Cyp2d10 protein_coding protein_coding MGP_C57BL6NJ_T0013424.1 MGP_C57BL6NJ_G0011469.1 mouse_genomes_project 15 105179463 105179820 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001077.1 MGP_C57BL6NJ_G0000986.1 mouse_genomes_project 15 101934206 101934671 + TEC TEC MGP_C57BL6NJ_T0041131.1 MGP_C57BL6NJ_G0022158.1 mouse_genomes_project 15 25033076 25047193 + MGP_C57BL6NJ_P0041131 Zfp622 protein_coding protein_coding MGP_C57BL6NJ_T0003776.1 MGP_C57BL6NJ_G0003409.1 mouse_genomes_project 15 93976228 93984962 + C230037L18Rik antisense antisense MGP_C57BL6NJ_T0003777.1 MGP_C57BL6NJ_G0003409.1 mouse_genomes_project 15 93976244 93978028 + C230037L18Rik antisense antisense MGP_C57BL6NJ_T0003778.1 MGP_C57BL6NJ_G0003409.1 mouse_genomes_project 15 93977853 93984897 + C230037L18Rik antisense antisense MGP_C57BL6NJ_T0010267.1 MGP_C57BL6NJ_G0008352.1 mouse_genomes_project 15 79211595 79211685 - Mir3079 miRNA miRNA MGP_C57BL6NJ_T0099967.1 MGP_C57BL6NJ_G0038013.1 mouse_genomes_project 15 44714357 44714464 + Gm22392 snRNA snRNA MGP_C57BL6NJ_T0042389.1 MGP_C57BL6NJ_G0022550.1 mouse_genomes_project 15 86048499 86066133 + MGP_C57BL6NJ_P0042389 Wbp2nl protein_coding protein_coding MGP_C57BL6NJ_T0043217.1 MGP_C57BL6NJ_G0022829.1 mouse_genomes_project 15 108537474 108539035 + MGP_C57BL6NJ_P0043217 Prr13 protein_coding protein_coding MGP_C57BL6NJ_T0043218.1 MGP_C57BL6NJ_G0022829.1 mouse_genomes_project 15 108537621 108541286 + MGP_C57BL6NJ_P0043218 Prr13 protein_coding protein_coding MGP_C57BL6NJ_T0043219.1 MGP_C57BL6NJ_G0022829.1 mouse_genomes_project 15 108537648 108541262 + MGP_C57BL6NJ_P0043219 Prr13 protein_coding protein_coding MGP_C57BL6NJ_T0043220.1 MGP_C57BL6NJ_G0022829.1 mouse_genomes_project 15 108537678 108541264 + MGP_C57BL6NJ_P0043220 Prr13 protein_coding protein_coding MGP_C57BL6NJ_T0043221.1 MGP_C57BL6NJ_G0022829.1 mouse_genomes_project 15 108538529 108541256 + MGP_C57BL6NJ_P0043221 Prr13 protein_coding protein_coding MGP_C57BL6NJ_T0043161.1 MGP_C57BL6NJ_G0022814.1 mouse_genomes_project 15 108145028 108166349 - Spryd3 protein_coding retained_intron MGP_C57BL6NJ_T0043162.1 MGP_C57BL6NJ_G0022814.1 mouse_genomes_project 15 108145028 108166391 - MGP_C57BL6NJ_P0043162 Spryd3 protein_coding protein_coding MGP_C57BL6NJ_T0043163.1 MGP_C57BL6NJ_G0022814.1 mouse_genomes_project 15 108146669 108159094 - Spryd3 protein_coding processed_transcript MGP_C57BL6NJ_T0043164.1 MGP_C57BL6NJ_G0022814.1 mouse_genomes_project 15 108160421 108161112 - Spryd3 protein_coding retained_intron MGP_C57BL6NJ_T0042017.1 MGP_C57BL6NJ_G0022445.1 mouse_genomes_project 15 81220709 81354876 - MGP_C57BL6NJ_P0042017 Cacng2 protein_coding protein_coding MGP_C57BL6NJ_T0010250.1 MGP_C57BL6NJ_G0008335.1 mouse_genomes_project 15 36569320 36569394 - Gm25303 miRNA miRNA MGP_C57BL6NJ_T0042531.1 MGP_C57BL6NJ_G0022602.1 mouse_genomes_project 15 89607602 89618092 - MGP_C57BL6NJ_P0042531 7530416G11Rik protein_coding protein_coding MGP_C57BL6NJ_T0099983.1 MGP_C57BL6NJ_G0038029.1 mouse_genomes_project 15 67710615 67710804 + Gm23907 snRNA snRNA MGP_C57BL6NJ_T0042891.1 MGP_C57BL6NJ_G0022707.1 mouse_genomes_project 15 103884719 103885777 + MGP_C57BL6NJ_P0042891 Olfr281 protein_coding protein_coding MGP_C57BL6NJ_T0006949.1 MGP_C57BL6NJ_G0005730.1 mouse_genomes_project 15 80094216 80106084 + 1700109K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0099977.1 MGP_C57BL6NJ_G0038023.1 mouse_genomes_project 15 58551773 58551880 - Gm26178 snRNA snRNA MGP_C57BL6NJ_T0041005.1 MGP_C57BL6NJ_G0022121.1 mouse_genomes_project 15 6771302 6797060 + MGP_C57BL6NJ_P0041005 Capsl protein_coding protein_coding MGP_C57BL6NJ_T0042035.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725508 81735417 + MGP_C57BL6NJ_P0042035 Kctd17 protein_coding protein_coding MGP_C57BL6NJ_T0042036.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725508 81735417 + MGP_C57BL6NJ_P0042036 Kctd17 protein_coding protein_coding MGP_C57BL6NJ_T0042037.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725572 81735829 + MGP_C57BL6NJ_P0042037 Kctd17 protein_coding protein_coding MGP_C57BL6NJ_T0042038.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725606 81735763 + MGP_C57BL6NJ_P0042038 Kctd17 protein_coding protein_coding MGP_C57BL6NJ_T0042039.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725635 81732780 + Kctd17 protein_coding retained_intron MGP_C57BL6NJ_T0042040.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81725740 81735567 + MGP_C57BL6NJ_P0042040 Kctd17 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042041.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81727030 81735500 + MGP_C57BL6NJ_P0042041 Kctd17 protein_coding protein_coding MGP_C57BL6NJ_T0042042.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81729931 81734654 + Kctd17 protein_coding retained_intron MGP_C57BL6NJ_T0042043.1 MGP_C57BL6NJ_G0022453.1 mouse_genomes_project 15 81730901 81734499 + Kctd17 protein_coding retained_intron MGP_C57BL6NJ_T0013426.1 MGP_C57BL6NJ_G0011471.1 mouse_genomes_project 15 105581925 105582195 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041145.1 MGP_C57BL6NJ_G0022168.1 mouse_genomes_project 15 30626762 30681958 + MGP_C57BL6NJ_P0041145 Dap protein_coding protein_coding MGP_C57BL6NJ_T0041146.1 MGP_C57BL6NJ_G0022168.1 mouse_genomes_project 15 30626836 30682998 + MGP_C57BL6NJ_P0041146 Dap protein_coding protein_coding MGP_C57BL6NJ_T0041147.1 MGP_C57BL6NJ_G0022168.1 mouse_genomes_project 15 30626867 30682116 + MGP_C57BL6NJ_P0041147 Dap protein_coding protein_coding MGP_C57BL6NJ_T0041148.1 MGP_C57BL6NJ_G0022168.1 mouse_genomes_project 15 30676990 30682041 + MGP_C57BL6NJ_P0041148 Dap protein_coding protein_coding MGP_C57BL6NJ_T0041818.1 MGP_C57BL6NJ_G0022390.1 mouse_genomes_project 15 79250888 79254197 + MGP_C57BL6NJ_P0041818 Exosc4 protein_coding protein_coding MGP_C57BL6NJ_T0041819.1 MGP_C57BL6NJ_G0022390.1 mouse_genomes_project 15 79251082 79252615 + Exosc4 protein_coding processed_transcript MGP_C57BL6NJ_T0011660.1 MGP_C57BL6NJ_G0009745.1 mouse_genomes_project 15 108570213 108570395 + Gm27406 misc_RNA misc_RNA MGP_C57BL6NJ_T0011645.1 MGP_C57BL6NJ_G0009730.1 mouse_genomes_project 15 35697230 35697485 + Gm25372 misc_RNA misc_RNA MGP_C57BL6NJ_T0042727.1 MGP_C57BL6NJ_G0022656.1 mouse_genomes_project 15 95810250 95858250 - MGP_C57BL6NJ_P0042727 Abcd2 protein_coding protein_coding MGP_C57BL6NJ_T0099548.1 MGP_C57BL6NJ_G0037598.1 mouse_genomes_project 15 60232341 60233832 - Gm20712 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0041056.1 MGP_C57BL6NJ_G0022139.1 mouse_genomes_project 15 9533552 9548272 - MGP_C57BL6NJ_P0041056 Sub1 protein_coding protein_coding MGP_C57BL6NJ_T0041057.1 MGP_C57BL6NJ_G0022139.1 mouse_genomes_project 15 9536254 9549197 - MGP_C57BL6NJ_P0041057 Sub1 protein_coding protein_coding MGP_C57BL6NJ_T0041058.1 MGP_C57BL6NJ_G0022139.1 mouse_genomes_project 15 9538347 9548226 - Sub1 protein_coding retained_intron MGP_C57BL6NJ_T0041059.1 MGP_C57BL6NJ_G0022139.1 mouse_genomes_project 15 9538667 9547964 - Sub1 protein_coding processed_transcript MGP_C57BL6NJ_T0042375.1 MGP_C57BL6NJ_G0022542.1 mouse_genomes_project 15 85782573 85855303 + MGP_C57BL6NJ_P0042375 Mei1 protein_coding protein_coding MGP_C57BL6NJ_T0042376.1 MGP_C57BL6NJ_G0022542.1 mouse_genomes_project 15 85782722 85855303 + MGP_C57BL6NJ_P0042376 Mei1 protein_coding protein_coding MGP_C57BL6NJ_T0042377.1 MGP_C57BL6NJ_G0022542.1 mouse_genomes_project 15 85800498 85855455 + MGP_C57BL6NJ_P0042377 Mei1 protein_coding protein_coding MGP_C57BL6NJ_T0042378.1 MGP_C57BL6NJ_G0022542.1 mouse_genomes_project 15 85801185 85855380 + MGP_C57BL6NJ_P0042378 Mei1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041052.1 MGP_C57BL6NJ_G0022135.1 mouse_genomes_project 15 8511800 8516075 - MGP_C57BL6NJ_P0041052 Rxfp3 protein_coding protein_coding MGP_C57BL6NJ_T0041876.1 MGP_C57BL6NJ_G0022400.1 mouse_genomes_project 15 79398894 79400925 + MGP_C57BL6NJ_P0041876 Scx protein_coding protein_coding MGP_C57BL6NJ_T0043122.1 MGP_C57BL6NJ_G0022782.1 mouse_genomes_project 15 107157536 107165506 + MGP_C57BL6NJ_P0043122 Nr4a1 protein_coding protein_coding MGP_C57BL6NJ_T0041458.1 MGP_C57BL6NJ_G0022288.1 mouse_genomes_project 15 60790541 60807190 + Sqle protein_coding retained_intron MGP_C57BL6NJ_T0041459.1 MGP_C57BL6NJ_G0022288.1 mouse_genomes_project 15 60790545 60809424 + MGP_C57BL6NJ_P0041459 Sqle protein_coding protein_coding MGP_C57BL6NJ_T0041460.1 MGP_C57BL6NJ_G0022288.1 mouse_genomes_project 15 60790571 60809424 + MGP_C57BL6NJ_P0041460 Sqle protein_coding protein_coding MGP_C57BL6NJ_T0041461.1 MGP_C57BL6NJ_G0022288.1 mouse_genomes_project 15 60801007 60805432 + Sqle protein_coding retained_intron MGP_C57BL6NJ_T0042519.1 MGP_C57BL6NJ_G0022594.1 mouse_genomes_project 15 88996002 89016610 + MGP_C57BL6NJ_P0042519 Nup50 protein_coding protein_coding MGP_C57BL6NJ_T0042910.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104111241 104128931 - MGP_C57BL6NJ_P0042910 Ddx23 protein_coding protein_coding MGP_C57BL6NJ_T0042911.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104114177 104128926 - Ddx23 protein_coding retained_intron MGP_C57BL6NJ_T0042912.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104114189 104128923 - Ddx23 protein_coding retained_intron MGP_C57BL6NJ_T0042913.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104118216 104128926 - Ddx23 protein_coding retained_intron MGP_C57BL6NJ_T0042914.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104122676 104128900 - MGP_C57BL6NJ_P0042914 Ddx23 protein_coding protein_coding MGP_C57BL6NJ_T0042915.1 MGP_C57BL6NJ_G0022715.1 mouse_genomes_project 15 104123890 104128931 - Ddx23 protein_coding retained_intron MGP_C57BL6NJ_T0099968.1 MGP_C57BL6NJ_G0038014.1 mouse_genomes_project 15 45247880 45247974 + Gm24768 snRNA snRNA MGP_C57BL6NJ_T0042308.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338289 85366207 + MGP_C57BL6NJ_P0042308 L3mbtl2 protein_coding protein_coding MGP_C57BL6NJ_T0042309.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338334 85366197 + MGP_C57BL6NJ_P0042309 L3mbtl2 protein_coding protein_coding MGP_C57BL6NJ_T0042310.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338354 85366197 + L3mbtl2 protein_coding retained_intron MGP_C57BL6NJ_T0042311.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338356 85366191 + L3mbtl2 protein_coding processed_transcript MGP_C57BL6NJ_T0042312.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338356 85366207 + MGP_C57BL6NJ_P0042312 L3mbtl2 protein_coding protein_coding MGP_C57BL6NJ_T0042313.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85338401 85359855 + L3mbtl2 protein_coding processed_transcript MGP_C57BL6NJ_T0042314.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85344106 85345860 + L3mbtl2 protein_coding retained_intron MGP_C57BL6NJ_T0042315.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85344175 85353307 + L3mbtl2 protein_coding processed_transcript MGP_C57BL6NJ_T0042316.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85353195 85354968 + MGP_C57BL6NJ_P0042316 L3mbtl2 protein_coding protein_coding MGP_C57BL6NJ_T0042318.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85359798 85361640 + L3mbtl2 protein_coding retained_intron MGP_C57BL6NJ_T0042319.1 MGP_C57BL6NJ_G0022526.1 mouse_genomes_project 15 85363913 85365079 + L3mbtl2 protein_coding retained_intron MGP_C57BL6NJ_T0041360.1 MGP_C57BL6NJ_G0022248.1 mouse_genomes_project 15 53740423 53761457 + MGP_C57BL6NJ_P0041360 Med30 protein_coding protein_coding MGP_C57BL6NJ_T0001064.1 MGP_C57BL6NJ_G0000973.1 mouse_genomes_project 15 5937819 5940787 - TEC TEC MGP_C57BL6NJ_T0041979.1 MGP_C57BL6NJ_G0022429.1 mouse_genomes_project 15 80453120 80456171 - MGP_C57BL6NJ_P0041979 protein_coding protein_coding MGP_C57BL6NJ_T0041980.1 MGP_C57BL6NJ_G0022429.1 mouse_genomes_project 15 80453190 80456788 - protein_coding retained_intron MGP_C57BL6NJ_T0042577.1 MGP_C57BL6NJ_G0022617.1 mouse_genomes_project 15 93166873 93188317 + protein_coding processed_transcript MGP_C57BL6NJ_T0013403.1 MGP_C57BL6NJ_G0011448.1 mouse_genomes_project 15 67001200 67001512 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099995.1 MGP_C57BL6NJ_G0038041.1 mouse_genomes_project 15 87052463 87052614 + Rnu12 snRNA snRNA MGP_C57BL6NJ_T0041155.1 MGP_C57BL6NJ_G0022171.1 mouse_genomes_project 15 30866025 30881526 - MGP_C57BL6NJ_P0041155 Ropn1l protein_coding protein_coding MGP_C57BL6NJ_T0041344.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51474857 51742821 - MGP_C57BL6NJ_P0041344 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041345.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51478516 51742842 - MGP_C57BL6NJ_P0041345 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041346.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51478534 51742179 - MGP_C57BL6NJ_P0041346 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041347.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51480539 51742176 - MGP_C57BL6NJ_P0041347 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041348.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51480540 51735886 - MGP_C57BL6NJ_P0041348 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041349.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51480556 51742978 - MGP_C57BL6NJ_P0041349 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041350.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51667204 51675227 - MGP_C57BL6NJ_P0041350 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0041351.1 MGP_C57BL6NJ_G0022242.1 mouse_genomes_project 15 51697827 51743400 - MGP_C57BL6NJ_P0041351 Trps1 protein_coding protein_coding MGP_C57BL6NJ_T0042392.1 MGP_C57BL6NJ_G0022553.1 mouse_genomes_project 15 86093318 86105224 + Smdt1 protein_coding processed_transcript MGP_C57BL6NJ_T0042395.1 MGP_C57BL6NJ_G0022553.1 mouse_genomes_project 15 86095345 86105172 + Smdt1 protein_coding processed_transcript MGP_C57BL6NJ_T0042397.1 MGP_C57BL6NJ_G0022553.1 mouse_genomes_project 15 86102118 86105255 + MGP_C57BL6NJ_P0042397 Smdt1 protein_coding protein_coding MGP_C57BL6NJ_T0042398.1 MGP_C57BL6NJ_G0022553.1 mouse_genomes_project 15 86102178 86105256 + MGP_C57BL6NJ_P0042398 Smdt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042399.1 MGP_C57BL6NJ_G0022553.1 mouse_genomes_project 15 86103384 86105034 + MGP_C57BL6NJ_P0042399 Smdt1 protein_coding protein_coding MGP_C57BL6NJ_T0041060.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9684261 9756136 + MGP_C57BL6NJ_P0041060 protein_coding protein_coding MGP_C57BL6NJ_T0041061.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9684281 9714209 + MGP_C57BL6NJ_P0041061 protein_coding protein_coding MGP_C57BL6NJ_T0041062.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9684289 9706031 + MGP_C57BL6NJ_P0041062 protein_coding protein_coding MGP_C57BL6NJ_T0041063.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9684296 9690428 + protein_coding processed_transcript MGP_C57BL6NJ_T0041064.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9684341 9760540 + MGP_C57BL6NJ_P0041064 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041065.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9727601 9734202 + MGP_C57BL6NJ_P0041065 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041066.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9728522 9754446 + MGP_C57BL6NJ_P0041066 protein_coding protein_coding MGP_C57BL6NJ_T0041067.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9734140 9754916 + MGP_C57BL6NJ_P0041067 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041068.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9738257 9739768 + protein_coding retained_intron MGP_C57BL6NJ_T0041069.1 MGP_C57BL6NJ_G0022140.1 mouse_genomes_project 15 9748525 9754916 + protein_coding processed_transcript MGP_C57BL6NJ_T0042871.1 MGP_C57BL6NJ_G0022698.1 mouse_genomes_project 15 103565984 103591412 - MGP_C57BL6NJ_P0042871 protein_coding protein_coding MGP_C57BL6NJ_T0042873.1 MGP_C57BL6NJ_G0022698.1 mouse_genomes_project 15 103583991 103591315 - protein_coding processed_transcript MGP_C57BL6NJ_T0041922.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79630846 79652441 + protein_coding processed_transcript MGP_C57BL6NJ_T0041923.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79630862 79658177 + MGP_C57BL6NJ_P0041923 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041924.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79650812 79651988 + protein_coding processed_transcript MGP_C57BL6NJ_T0041925.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79652038 79658171 + protein_coding retained_intron MGP_C57BL6NJ_T0041926.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79652160 79658167 + MGP_C57BL6NJ_P0041926 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041927.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79653064 79656601 + protein_coding retained_intron MGP_C57BL6NJ_T0041928.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79653079 79656765 + MGP_C57BL6NJ_P0041928 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041929.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79653322 79655745 + protein_coding retained_intron MGP_C57BL6NJ_T0041930.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79656059 79658171 + protein_coding retained_intron MGP_C57BL6NJ_T0041931.1 MGP_C57BL6NJ_G0022413.1 mouse_genomes_project 15 79656168 79658171 + protein_coding retained_intron MGP_C57BL6NJ_T0041114.1 MGP_C57BL6NJ_G0022154.1 mouse_genomes_project 15 24353399 24406620 - MGP_C57BL6NJ_P0041114 Basp1 protein_coding protein_coding MGP_C57BL6NJ_T0013397.1 MGP_C57BL6NJ_G0011442.1 mouse_genomes_project 15 55439288 55439693 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043194.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386618 108393049 + MGP_C57BL6NJ_P0043194 Myg1 protein_coding protein_coding MGP_C57BL6NJ_T0043195.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386629 108387506 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0043196.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386647 108392761 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0043197.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386659 108392744 + MGP_C57BL6NJ_P0043197 Myg1 protein_coding protein_coding MGP_C57BL6NJ_T0043198.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386664 108392656 + MGP_C57BL6NJ_P0043198 Myg1 protein_coding protein_coding MGP_C57BL6NJ_T0043199.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108386826 108392105 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0043200.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108387339 108391787 + Myg1 protein_coding processed_transcript MGP_C57BL6NJ_T0043201.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108388549 108391811 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0043202.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108391680 108392761 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0043203.1 MGP_C57BL6NJ_G0022824.1 mouse_genomes_project 15 108391942 108392700 + Myg1 protein_coding retained_intron MGP_C57BL6NJ_T0099997.1 MGP_C57BL6NJ_G0038043.1 mouse_genomes_project 15 90409460 90409564 - Gm22818 snRNA snRNA MGP_C57BL6NJ_T0099961.1 MGP_C57BL6NJ_G0038007.1 mouse_genomes_project 15 23756976 23757134 - Gm22810 snRNA snRNA MGP_C57BL6NJ_T0099023.1 MGP_C57BL6NJ_G0037087.1 mouse_genomes_project 15 96256644 96256757 - Gm24647 rRNA rRNA MGP_C57BL6NJ_T0013427.1 MGP_C57BL6NJ_G0011472.1 mouse_genomes_project 15 109768498 109769926 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042595.1 MGP_C57BL6NJ_G0022624.1 mouse_genomes_project 15 93510653 93522568 + MGP_C57BL6NJ_P0042595 Panx2 protein_coding protein_coding MGP_C57BL6NJ_T0042596.1 MGP_C57BL6NJ_G0022624.1 mouse_genomes_project 15 93510666 93523597 + MGP_C57BL6NJ_P0042596 Panx2 protein_coding protein_coding MGP_C57BL6NJ_T0042597.1 MGP_C57BL6NJ_G0022624.1 mouse_genomes_project 15 93522362 93526227 + MGP_C57BL6NJ_P0042597 Panx2 protein_coding protein_coding MGP_C57BL6NJ_T0101307.1 MGP_C57BL6NJ_G0039353.1 mouse_genomes_project 15 103963059 103963197 - Snora34 snoRNA snoRNA MGP_C57BL6NJ_T0043138.1 MGP_C57BL6NJ_G0022793.1 mouse_genomes_project 15 107519717 107532090 - MGP_C57BL6NJ_P0043138 Krt90 protein_coding protein_coding MGP_C57BL6NJ_T0042380.1 MGP_C57BL6NJ_G0022544.1 mouse_genomes_project 15 85878020 85937857 + MGP_C57BL6NJ_P0042380 Srebf2 protein_coding protein_coding MGP_C57BL6NJ_T0099987.1 MGP_C57BL6NJ_G0038033.1 mouse_genomes_project 15 76277541 76277668 + Gm22106 snRNA snRNA MGP_C57BL6NJ_T0102180.1 MGP_C57BL6NJ_G0040197.1 mouse_genomes_project 15 82632545 82633064 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0042406.1 MGP_C57BL6NJ_G0022560.1 mouse_genomes_project 15 86461003 86466251 - MGP_C57BL6NJ_P0042406 Cyp2d34 protein_coding protein_coding MGP_C57BL6NJ_T0101308.1 MGP_C57BL6NJ_G0039354.1 mouse_genomes_project 15 103969744 103969881 - Snora2b snoRNA snoRNA MGP_C57BL6NJ_T0017901.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 973757 978136 - BC037032 processed_transcript TEC MGP_C57BL6NJ_T0017902.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 975329 981037 - BC037032 processed_transcript antisense MGP_C57BL6NJ_T0017903.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 976014 981046 - BC037032 processed_transcript antisense MGP_C57BL6NJ_T0017904.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 976618 981049 - BC037032 processed_transcript antisense MGP_C57BL6NJ_T0017905.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 977214 979720 - BC037032 processed_transcript antisense MGP_C57BL6NJ_T0017906.1 MGP_C57BL6NJ_G0015682.1 mouse_genomes_project 15 980040 980796 - BC037032 processed_transcript antisense MGP_C57BL6NJ_T0102430.1 MGP_C57BL6NJ_G0040339.1 mouse_genomes_project 15 78217909 78222133 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102431.1 MGP_C57BL6NJ_G0040339.1 mouse_genomes_project 15 78218269 78221740 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0041697.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78395950 78415688 - MGP_C57BL6NJ_P0041697 Ly6h protein_coding protein_coding MGP_C57BL6NJ_T0041698.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78402088 78415688 - MGP_C57BL6NJ_P0041698 Ly6h protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041699.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78413787 78416295 - MGP_C57BL6NJ_P0041699 Ly6h protein_coding protein_coding MGP_C57BL6NJ_T0041700.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78413788 78415896 - MGP_C57BL6NJ_P0041700 Ly6h protein_coding protein_coding MGP_C57BL6NJ_T0041701.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78413790 78415697 - MGP_C57BL6NJ_P0041701 Ly6h protein_coding protein_coding MGP_C57BL6NJ_T0041702.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78414069 78416256 - MGP_C57BL6NJ_P0041702 Ly6h protein_coding protein_coding MGP_C57BL6NJ_T0041703.1 MGP_C57BL6NJ_G0022360.1 mouse_genomes_project 15 78414256 78415672 - Ly6h protein_coding retained_intron MGP_C57BL6NJ_T0042974.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105003310 105023299 + MGP_C57BL6NJ_P0042974 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042975.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105003414 105021884 + MGP_C57BL6NJ_P0042975 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042976.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105003414 105021786 + MGP_C57BL6NJ_P0042976 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042977.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105003450 105021741 + MGP_C57BL6NJ_P0042977 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042978.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105003647 105021785 + MGP_C57BL6NJ_P0042978 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042979.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105004020 105019927 + MGP_C57BL6NJ_P0042979 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042980.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105004038 105021860 + MGP_C57BL6NJ_P0042980 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042981.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105014218 105015236 + MGP_C57BL6NJ_P0042981 Tmbim6 protein_coding protein_coding MGP_C57BL6NJ_T0042982.1 MGP_C57BL6NJ_G0022739.1 mouse_genomes_project 15 105019123 105022041 + Tmbim6 protein_coding retained_intron MGP_C57BL6NJ_T0001071.1 MGP_C57BL6NJ_G0000980.1 mouse_genomes_project 15 70462722 70467677 - TEC TEC MGP_C57BL6NJ_T0043071.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106479842 106509218 - MGP_C57BL6NJ_P0043071 Bin2 protein_coding protein_coding MGP_C57BL6NJ_T0043072.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106479848 106509170 - MGP_C57BL6NJ_P0043072 Bin2 protein_coding protein_coding MGP_C57BL6NJ_T0043073.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106479848 106509192 - MGP_C57BL6NJ_P0043073 Bin2 protein_coding protein_coding MGP_C57BL6NJ_T0043074.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106484101 106509170 - MGP_C57BL6NJ_P0043074 Bin2 protein_coding protein_coding MGP_C57BL6NJ_T0043075.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106484197 106509190 - MGP_C57BL6NJ_P0043075 Bin2 protein_coding protein_coding MGP_C57BL6NJ_T0043076.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106484239 106491225 - Bin2 protein_coding processed_transcript MGP_C57BL6NJ_T0043077.1 MGP_C57BL6NJ_G0022772.1 mouse_genomes_project 15 106488650 106490284 - Bin2 protein_coding retained_intron MGP_C57BL6NJ_T0042633.1 MGP_C57BL6NJ_G0022633.1 mouse_genomes_project 15 93717532 93764152 + MGP_C57BL6NJ_P0042633 Ppp6r2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042634.1 MGP_C57BL6NJ_G0022633.1 mouse_genomes_project 15 93730829 93763413 + MGP_C57BL6NJ_P0042634 Ppp6r2 protein_coding protein_coding MGP_C57BL6NJ_T0042969.1 MGP_C57BL6NJ_G0022738.1 mouse_genomes_project 15 104923528 104978143 - MGP_C57BL6NJ_P0042969 Fmnl3 protein_coding protein_coding MGP_C57BL6NJ_T0042970.1 MGP_C57BL6NJ_G0022738.1 mouse_genomes_project 15 104923528 104978110 - MGP_C57BL6NJ_P0042970 Fmnl3 protein_coding protein_coding MGP_C57BL6NJ_T0042971.1 MGP_C57BL6NJ_G0022738.1 mouse_genomes_project 15 104923528 104978110 - MGP_C57BL6NJ_P0042971 Fmnl3 protein_coding protein_coding MGP_C57BL6NJ_T0042972.1 MGP_C57BL6NJ_G0022738.1 mouse_genomes_project 15 104931705 104932973 - Fmnl3 protein_coding retained_intron MGP_C57BL6NJ_T0042973.1 MGP_C57BL6NJ_G0022738.1 mouse_genomes_project 15 104935262 104943146 - Fmnl3 protein_coding processed_transcript MGP_C57BL6NJ_T0042062.1 MGP_C57BL6NJ_G0022463.1 mouse_genomes_project 15 82184591 82192817 + MGP_C57BL6NJ_P0042062 Cdc42ep1 protein_coding protein_coding MGP_C57BL6NJ_T0041374.1 MGP_C57BL6NJ_G0022256.1 mouse_genomes_project 15 55979599 56068474 - MGP_C57BL6NJ_P0041374 Enpp2 protein_coding protein_coding MGP_C57BL6NJ_T0041375.1 MGP_C57BL6NJ_G0022256.1 mouse_genomes_project 15 55979602 56068330 - MGP_C57BL6NJ_P0041375 Enpp2 protein_coding protein_coding MGP_C57BL6NJ_T0041376.1 MGP_C57BL6NJ_G0022256.1 mouse_genomes_project 15 55979970 56068346 - MGP_C57BL6NJ_P0041376 Enpp2 protein_coding protein_coding MGP_C57BL6NJ_T0041377.1 MGP_C57BL6NJ_G0022256.1 mouse_genomes_project 15 55980067 56068289 - MGP_C57BL6NJ_P0041377 Enpp2 protein_coding protein_coding MGP_C57BL6NJ_T0041115.1 MGP_C57BL6NJ_G0022155.1 mouse_genomes_project 15 24408009 24408662 + MGP_C57BL6NJ_P0041115 Gm5468 protein_coding protein_coding MGP_C57BL6NJ_T0041945.1 MGP_C57BL6NJ_G0022418.1 mouse_genomes_project 15 79678458 79685356 - MGP_C57BL6NJ_P0041945 Lrrc24 protein_coding protein_coding MGP_C57BL6NJ_T0041946.1 MGP_C57BL6NJ_G0022418.1 mouse_genomes_project 15 79679389 79681599 - Lrrc24 protein_coding retained_intron MGP_C57BL6NJ_T0041947.1 MGP_C57BL6NJ_G0022418.1 mouse_genomes_project 15 79682810 79685342 - Lrrc24 protein_coding retained_intron MGP_C57BL6NJ_T0041948.1 MGP_C57BL6NJ_G0022418.1 mouse_genomes_project 15 79684648 79687028 - MGP_C57BL6NJ_P0041948 Lrrc24 protein_coding protein_coding MGP_C57BL6NJ_T0042172.1 MGP_C57BL6NJ_G0022492.1 mouse_genomes_project 15 83115164 83129000 - MGP_C57BL6NJ_P0042172 Josd1 protein_coding protein_coding MGP_C57BL6NJ_T0042994.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105264961 105301651 - MGP_C57BL6NJ_P0042994 Racgap1 protein_coding protein_coding MGP_C57BL6NJ_T0042995.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105264962 105301664 - MGP_C57BL6NJ_P0042995 Racgap1 protein_coding protein_coding MGP_C57BL6NJ_T0042996.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105271987 105280934 - Racgap1 protein_coding retained_intron MGP_C57BL6NJ_T0042997.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105272267 105301597 - Racgap1 protein_coding processed_transcript MGP_C57BL6NJ_T0042998.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105276687 105301590 - Racgap1 protein_coding retained_intron MGP_C57BL6NJ_T0042999.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105276747 105288168 - MGP_C57BL6NJ_P0042999 Racgap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043000.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105276793 105286552 - Racgap1 protein_coding retained_intron MGP_C57BL6NJ_T0043001.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105280272 105301660 - MGP_C57BL6NJ_P0043001 Racgap1 protein_coding protein_coding MGP_C57BL6NJ_T0043002.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105280288 105282987 - Racgap1 protein_coding retained_intron MGP_C57BL6NJ_T0043003.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105282505 105301577 - MGP_C57BL6NJ_P0043003 Racgap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043004.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105284438 105301620 - MGP_C57BL6NJ_P0043004 Racgap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043005.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105285742 105301590 - Racgap1 protein_coding retained_intron MGP_C57BL6NJ_T0043006.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105285956 105301620 - MGP_C57BL6NJ_P0043006 Racgap1 protein_coding protein_coding MGP_C57BL6NJ_T0043007.1 MGP_C57BL6NJ_G0022746.1 mouse_genomes_project 15 105288149 105301651 - MGP_C57BL6NJ_P0043007 Racgap1 protein_coding protein_coding MGP_C57BL6NJ_T0102868.1 MGP_C57BL6NJ_G0040662.1 mouse_genomes_project 15 77850063 77850277 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0042458.1 MGP_C57BL6NJ_G0022576.1 mouse_genomes_project 15 87505977 87514892 - MGP_C57BL6NJ_P0042458 Mcat protein_coding protein_coding MGP_C57BL6NJ_T0043134.1 MGP_C57BL6NJ_G0022789.1 mouse_genomes_project 15 107406016 107416698 + MGP_C57BL6NJ_P0043134 protein_coding protein_coding MGP_C57BL6NJ_T0042806.1 MGP_C57BL6NJ_G0022682.1 mouse_genomes_project 15 102008663 102009044 - MGP_C57BL6NJ_P0042806 Gm8888 protein_coding protein_coding MGP_C57BL6NJ_T0102880.1 MGP_C57BL6NJ_G0040674.1 mouse_genomes_project 15 103935708 103935946 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041966.1 MGP_C57BL6NJ_G0022426.1 mouse_genomes_project 15 80014615 80021914 - MGP_C57BL6NJ_P0041966 Mb protein_coding protein_coding MGP_C57BL6NJ_T0041967.1 MGP_C57BL6NJ_G0022426.1 mouse_genomes_project 15 80014615 80061029 - MGP_C57BL6NJ_P0041967 Mb protein_coding protein_coding MGP_C57BL6NJ_T0041968.1 MGP_C57BL6NJ_G0022426.1 mouse_genomes_project 15 80014615 80021854 - MGP_C57BL6NJ_P0041968 Mb protein_coding protein_coding MGP_C57BL6NJ_T0041449.1 MGP_C57BL6NJ_G0022281.1 mouse_genomes_project 15 60234149 60277545 - MGP_C57BL6NJ_P0041449 Tmem65 protein_coding protein_coding MGP_C57BL6NJ_T0011647.1 MGP_C57BL6NJ_G0009732.1 mouse_genomes_project 15 59991422 59991723 + Gm23789 misc_RNA misc_RNA MGP_C57BL6NJ_T0041326.1 MGP_C57BL6NJ_G0022237.1 mouse_genomes_project 15 44743414 44906632 + MGP_C57BL6NJ_P0041326 Pkhd1l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041327.1 MGP_C57BL6NJ_G0022237.1 mouse_genomes_project 15 44743414 44892673 + MGP_C57BL6NJ_P0041327 Pkhd1l1 protein_coding protein_coding MGP_C57BL6NJ_T0041328.1 MGP_C57BL6NJ_G0022237.1 mouse_genomes_project 15 44743414 44892667 + MGP_C57BL6NJ_P0041328 Pkhd1l1 protein_coding protein_coding MGP_C57BL6NJ_T0041757.1 MGP_C57BL6NJ_G0022378.1 mouse_genomes_project 15 78891113 78904385 - MGP_C57BL6NJ_P0041757 Fam83h protein_coding protein_coding MGP_C57BL6NJ_T0041758.1 MGP_C57BL6NJ_G0022378.1 mouse_genomes_project 15 78891113 78899519 - MGP_C57BL6NJ_P0041758 Fam83h protein_coding protein_coding MGP_C57BL6NJ_T0041877.1 MGP_C57BL6NJ_G0022401.1 mouse_genomes_project 15 79418894 79443126 + MGP_C57BL6NJ_P0041877 Hsf1 protein_coding protein_coding MGP_C57BL6NJ_T0041878.1 MGP_C57BL6NJ_G0022401.1 mouse_genomes_project 15 79419050 79442776 + MGP_C57BL6NJ_P0041878 Hsf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041132.1 MGP_C57BL6NJ_G0022159.1 mouse_genomes_project 15 25373084 25376408 + March11 protein_coding retained_intron MGP_C57BL6NJ_T0041133.1 MGP_C57BL6NJ_G0022159.1 mouse_genomes_project 15 25373298 25478313 + MGP_C57BL6NJ_P0041133 March11 protein_coding protein_coding MGP_C57BL6NJ_T0041134.1 MGP_C57BL6NJ_G0022159.1 mouse_genomes_project 15 25453037 25478470 + March11 protein_coding retained_intron MGP_C57BL6NJ_T0042811.1 MGP_C57BL6NJ_G0022686.1 mouse_genomes_project 15 103009132 103043589 - MGP_C57BL6NJ_P0042811 Rpap3 protein_coding protein_coding MGP_C57BL6NJ_T0042214.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83372193 83390511 - MGP_C57BL6NJ_P0042214 Cbx7 protein_coding protein_coding MGP_C57BL6NJ_T0042215.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83372207 83390634 - MGP_C57BL6NJ_P0042215 Cbx7 protein_coding protein_coding MGP_C57BL6NJ_T0042216.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83372210 83390763 - Cbx7 protein_coding retained_intron MGP_C57BL6NJ_T0042217.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83374545 83391894 - MGP_C57BL6NJ_P0042217 Cbx7 protein_coding protein_coding MGP_C57BL6NJ_T0042218.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83374814 83432152 - MGP_C57BL6NJ_P0042218 Cbx7 protein_coding protein_coding MGP_C57BL6NJ_T0042219.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83375318 83390511 - MGP_C57BL6NJ_P0042219 Cbx7 protein_coding protein_coding MGP_C57BL6NJ_T0042220.1 MGP_C57BL6NJ_G0022500.1 mouse_genomes_project 15 83388545 83391825 - Cbx7 protein_coding retained_intron MGP_C57BL6NJ_T0099994.1 MGP_C57BL6NJ_G0038040.1 mouse_genomes_project 15 85256948 85257055 + Gm22067 snRNA snRNA MGP_C57BL6NJ_T0099957.1 MGP_C57BL6NJ_G0038003.1 mouse_genomes_project 15 9726314 9726423 - Gm25713 snRNA snRNA MGP_C57BL6NJ_T0041352.1 MGP_C57BL6NJ_G0022243.1 mouse_genomes_project 15 52719667 52807906 - MGP_C57BL6NJ_P0041352 Eif3h protein_coding protein_coding MGP_C57BL6NJ_T0040915.1 MGP_C57BL6NJ_G0022100.1 mouse_genomes_project 15 2199128 2233734 + MGP_C57BL6NJ_P0040915 Ttc33 protein_coding protein_coding MGP_C57BL6NJ_T0040916.1 MGP_C57BL6NJ_G0022100.1 mouse_genomes_project 15 2199538 2233435 + MGP_C57BL6NJ_P0040916 Ttc33 protein_coding protein_coding MGP_C57BL6NJ_T0040917.1 MGP_C57BL6NJ_G0022100.1 mouse_genomes_project 15 2200777 2227215 + MGP_C57BL6NJ_P0040917 Ttc33 protein_coding protein_coding MGP_C57BL6NJ_T0043125.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107317272 107318213 + Krt7 protein_coding processed_transcript MGP_C57BL6NJ_T0043126.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107317281 107318625 + Krt7 protein_coding processed_transcript MGP_C57BL6NJ_T0043127.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107317281 107336304 + Krt7 protein_coding processed_transcript MGP_C57BL6NJ_T0043128.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107317332 107325937 + MGP_C57BL6NJ_P0043128 Krt7 protein_coding protein_coding MGP_C57BL6NJ_T0043129.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107318631 107339006 + MGP_C57BL6NJ_P0043129 Krt7 protein_coding protein_coding MGP_C57BL6NJ_T0043130.1 MGP_C57BL6NJ_G0022785.1 mouse_genomes_project 15 107318678 107336482 + Krt7 protein_coding retained_intron MGP_C57BL6NJ_T0042790.1 MGP_C57BL6NJ_G0022673.1 mouse_genomes_project 15 100292762 100636229 - MGP_C57BL6NJ_P0042790 Nell2 protein_coding protein_coding MGP_C57BL6NJ_T0042791.1 MGP_C57BL6NJ_G0022673.1 mouse_genomes_project 15 100293290 100635787 - MGP_C57BL6NJ_P0042791 Nell2 protein_coding protein_coding MGP_C57BL6NJ_T0042114.1 MGP_C57BL6NJ_G0022477.1 mouse_genomes_project 15 82530998 82540572 - MGP_C57BL6NJ_P0042114 Sox10 protein_coding protein_coding MGP_C57BL6NJ_T0042983.1 MGP_C57BL6NJ_G0022740.1 mouse_genomes_project 15 105035628 105076993 - MGP_C57BL6NJ_P0042983 Nckap5l protein_coding protein_coding MGP_C57BL6NJ_T0042984.1 MGP_C57BL6NJ_G0022740.1 mouse_genomes_project 15 105037208 105038131 - MGP_C57BL6NJ_P0042984 Nckap5l protein_coding protein_coding MGP_C57BL6NJ_T0042985.1 MGP_C57BL6NJ_G0022740.1 mouse_genomes_project 15 105037608 105038127 - Nckap5l protein_coding processed_transcript MGP_C57BL6NJ_T0042986.1 MGP_C57BL6NJ_G0022740.1 mouse_genomes_project 15 105043014 105076957 - MGP_C57BL6NJ_P0042986 Nckap5l protein_coding protein_coding MGP_C57BL6NJ_T0041724.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78780878 78795438 - MGP_C57BL6NJ_P0041724 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041725.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78780882 78795423 - MGP_C57BL6NJ_P0041725 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041726.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78780882 78795417 - MGP_C57BL6NJ_P0041726 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041727.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781570 78795389 - MGP_C57BL6NJ_P0041727 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041728.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781570 78795380 - MGP_C57BL6NJ_P0041728 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041729.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781570 78789639 - MGP_C57BL6NJ_P0041729 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041730.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781572 78795418 - MGP_C57BL6NJ_P0041730 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041731.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781572 78795402 - MGP_C57BL6NJ_P0041731 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041732.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781574 78782823 - Eef1d protein_coding retained_intron MGP_C57BL6NJ_T0041733.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78781886 78795412 - MGP_C57BL6NJ_P0041733 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041734.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78782356 78795639 - MGP_C57BL6NJ_P0041734 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041735.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78782363 78795402 - MGP_C57BL6NJ_P0041735 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041736.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78782476 78795630 - MGP_C57BL6NJ_P0041736 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041737.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78782758 78787338 - Eef1d protein_coding retained_intron MGP_C57BL6NJ_T0041738.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78784188 78795402 - Eef1d protein_coding retained_intron MGP_C57BL6NJ_T0041739.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78789205 78795630 - MGP_C57BL6NJ_P0041739 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041740.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78789344 78791446 - MGP_C57BL6NJ_P0041740 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0041741.1 MGP_C57BL6NJ_G0022370.1 mouse_genomes_project 15 78789588 78795374 - MGP_C57BL6NJ_P0041741 Eef1d protein_coding protein_coding MGP_C57BL6NJ_T0042031.1 MGP_C57BL6NJ_G0022451.1 mouse_genomes_project 15 81695504 81702859 - MGP_C57BL6NJ_P0042031 Tst protein_coding protein_coding MGP_C57BL6NJ_T0011651.1 MGP_C57BL6NJ_G0009736.1 mouse_genomes_project 15 63853549 63853676 + Gm27957 misc_RNA misc_RNA MGP_C57BL6NJ_T0042489.1 MGP_C57BL6NJ_G0022585.1 mouse_genomes_project 15 88196828 88218896 + MGP_C57BL6NJ_P0042489 Samm50 protein_coding protein_coding MGP_C57BL6NJ_T0013422.1 MGP_C57BL6NJ_G0011467.1 mouse_genomes_project 15 96252135 96254891 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099999.1 MGP_C57BL6NJ_G0038045.1 mouse_genomes_project 15 94601654 94601761 - Gm24415 snRNA snRNA MGP_C57BL6NJ_T0006982.1 MGP_C57BL6NJ_G0005753.1 mouse_genomes_project 15 108309991 108313550 + lincRNA lincRNA MGP_C57BL6NJ_T0041720.1 MGP_C57BL6NJ_G0022366.1 mouse_genomes_project 15 78618233 78712911 - MGP_C57BL6NJ_P0041720 Zc3h3 protein_coding protein_coding MGP_C57BL6NJ_T0041371.1 MGP_C57BL6NJ_G0022253.1 mouse_genomes_project 15 55560397 55613420 + MGP_C57BL6NJ_P0041371 Colec10 protein_coding protein_coding MGP_C57BL6NJ_T0041431.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59434388 59466616 - MGP_C57BL6NJ_P0041431 Zhx1 protein_coding protein_coding MGP_C57BL6NJ_T0041432.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59434388 59466860 - MGP_C57BL6NJ_P0041432 Zhx1 protein_coding protein_coding MGP_C57BL6NJ_T0041433.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59434690 59466840 - MGP_C57BL6NJ_P0041433 Zhx1 protein_coding protein_coding MGP_C57BL6NJ_T0041436.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59441831 59466585 - MGP_C57BL6NJ_P0041436 Zhx1 protein_coding protein_coding MGP_C57BL6NJ_T0041437.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59443765 59466734 - Zhx1 protein_coding retained_intron MGP_C57BL6NJ_T0041438.1 MGP_C57BL6NJ_G0022273.1 mouse_genomes_project 15 59459030 59466912 - Zhx1 protein_coding retained_intron MGP_C57BL6NJ_T0043179.1 MGP_C57BL6NJ_G0022819.1 mouse_genomes_project 15 108252040 108263687 - MGP_C57BL6NJ_P0043179 Itgb7 protein_coding protein_coding MGP_C57BL6NJ_T0043180.1 MGP_C57BL6NJ_G0022819.1 mouse_genomes_project 15 108260795 108268021 - MGP_C57BL6NJ_P0043180 Itgb7 protein_coding protein_coding MGP_C57BL6NJ_T0041744.1 MGP_C57BL6NJ_G0022373.1 mouse_genomes_project 15 78810746 78816794 - MGP_C57BL6NJ_P0041744 Tsta3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013412.1 MGP_C57BL6NJ_G0011457.1 mouse_genomes_project 15 81858015 81858456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042551.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90042220 90057176 + MGP_C57BL6NJ_P0042551 Trmu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042552.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90042228 90061970 + MGP_C57BL6NJ_P0042552 Trmu protein_coding protein_coding MGP_C57BL6NJ_T0042553.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90042289 90045752 + MGP_C57BL6NJ_P0042553 Trmu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042554.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90042322 90058532 + Trmu protein_coding retained_intron MGP_C57BL6NJ_T0042555.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90048072 90061004 + MGP_C57BL6NJ_P0042555 Trmu protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042556.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90057154 90059054 + Trmu protein_coding retained_intron MGP_C57BL6NJ_T0042557.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90058784 90061970 + Trmu protein_coding processed_transcript MGP_C57BL6NJ_T0042558.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90059328 90061637 + Trmu protein_coding retained_intron MGP_C57BL6NJ_T0042559.1 MGP_C57BL6NJ_G0022609.1 mouse_genomes_project 15 90059458 90061972 + Trmu protein_coding retained_intron MGP_C57BL6NJ_T0042632.1 MGP_C57BL6NJ_G0022632.1 mouse_genomes_project 15 93638444 93654665 - MGP_C57BL6NJ_P0042632 Dennd6b protein_coding protein_coding MGP_C57BL6NJ_T0041231.1 MGP_C57BL6NJ_G0022202.1 mouse_genomes_project 15 36220857 36274595 - MGP_C57BL6NJ_P0041231 Snx31 protein_coding protein_coding MGP_C57BL6NJ_T0041232.1 MGP_C57BL6NJ_G0022202.1 mouse_genomes_project 15 36221207 36274590 - MGP_C57BL6NJ_P0041232 Snx31 protein_coding protein_coding MGP_C57BL6NJ_T0041233.1 MGP_C57BL6NJ_G0022202.1 mouse_genomes_project 15 36253468 36261608 - Snx31 protein_coding processed_transcript MGP_C57BL6NJ_T0041234.1 MGP_C57BL6NJ_G0022202.1 mouse_genomes_project 15 36253468 36262066 - MGP_C57BL6NJ_P0041234 Snx31 protein_coding protein_coding MGP_C57BL6NJ_T0042504.1 MGP_C57BL6NJ_G0022589.1 mouse_genomes_project 15 88601487 88605913 - MGP_C57BL6NJ_P0042504 Ldoc1l protein_coding protein_coding MGP_C57BL6NJ_T0041489.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66020074 66298274 - MGP_C57BL6NJ_P0041489 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041490.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021759 66332488 - MGP_C57BL6NJ_P0041490 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041491.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021761 66332488 - MGP_C57BL6NJ_P0041491 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041492.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021761 66332488 - MGP_C57BL6NJ_P0041492 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041493.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021761 66332325 - MGP_C57BL6NJ_P0041493 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041494.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021761 66332488 - MGP_C57BL6NJ_P0041494 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041495.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021761 66298274 - MGP_C57BL6NJ_P0041495 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041496.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66021839 66332306 - MGP_C57BL6NJ_P0041496 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041497.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66022667 66298274 - MGP_C57BL6NJ_P0041497 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041498.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66027424 66035523 - Asap1 protein_coding retained_intron MGP_C57BL6NJ_T0041499.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66055421 66058154 - Asap1 protein_coding processed_transcript MGP_C57BL6NJ_T0041500.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66055474 66059190 - Asap1 protein_coding retained_intron MGP_C57BL6NJ_T0041501.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66096200 66152832 - MGP_C57BL6NJ_P0041501 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0041502.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66112549 66332301 - Asap1 protein_coding processed_transcript MGP_C57BL6NJ_T0041503.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66133984 66260858 - Asap1 protein_coding retained_intron MGP_C57BL6NJ_T0041504.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66134478 66259874 - Asap1 protein_coding processed_transcript MGP_C57BL6NJ_T0041505.1 MGP_C57BL6NJ_G0022301.1 mouse_genomes_project 15 66152837 66261623 - MGP_C57BL6NJ_P0041505 Asap1 protein_coding protein_coding MGP_C57BL6NJ_T0040966.1 MGP_C57BL6NJ_G0022111.1 mouse_genomes_project 15 5340133 5393635 + MGP_C57BL6NJ_P0040966 Nup155 protein_coding protein_coding MGP_C57BL6NJ_T0042568.1 MGP_C57BL6NJ_G0022613.1 mouse_genomes_project 15 90412896 90703946 + MGP_C57BL6NJ_P0042568 Tbc1d22a protein_coding protein_coding MGP_C57BL6NJ_T0102432.1 MGP_C57BL6NJ_G0040340.1 mouse_genomes_project 15 103620564 103621826 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102433.1 MGP_C57BL6NJ_G0040340.1 mouse_genomes_project 15 103621005 103628604 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102434.1 MGP_C57BL6NJ_G0040340.1 mouse_genomes_project 15 103621099 103628604 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102435.1 MGP_C57BL6NJ_G0040340.1 mouse_genomes_project 15 103621219 103628901 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0006918.1 MGP_C57BL6NJ_G0005711.1 mouse_genomes_project 15 31730172 31734270 - Snhg18 lincRNA lincRNA MGP_C57BL6NJ_T0003746.1 MGP_C57BL6NJ_G0003385.1 mouse_genomes_project 15 3417207 3423877 - Gm16311 antisense antisense MGP_C57BL6NJ_T0010318.1 MGP_C57BL6NJ_G0008403.1 mouse_genomes_project 15 109505803 109505874 - Mir6963 miRNA miRNA MGP_C57BL6NJ_T0042021.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81483380 81500587 + MGP_C57BL6NJ_P0042021 Ncf4 protein_coding protein_coding MGP_C57BL6NJ_T0042022.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81483423 81499003 + MGP_C57BL6NJ_P0042022 Ncf4 protein_coding protein_coding MGP_C57BL6NJ_T0042023.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81491611 81494610 + Ncf4 protein_coding retained_intron MGP_C57BL6NJ_T0042024.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81491825 81498778 + Ncf4 protein_coding processed_transcript MGP_C57BL6NJ_T0042025.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81494031 81498811 + Ncf4 protein_coding retained_intron MGP_C57BL6NJ_T0042026.1 MGP_C57BL6NJ_G0022448.1 mouse_genomes_project 15 81498886 81500582 + Ncf4 protein_coding retained_intron MGP_C57BL6NJ_T0041140.1 MGP_C57BL6NJ_G0022164.1 mouse_genomes_project 15 26778434 26804896 - MGP_C57BL6NJ_P0041140 Fam105a protein_coding protein_coding MGP_C57BL6NJ_T0041141.1 MGP_C57BL6NJ_G0022164.1 mouse_genomes_project 15 26779626 26804805 - MGP_C57BL6NJ_P0041141 Fam105a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013404.1 MGP_C57BL6NJ_G0011449.1 mouse_genomes_project 15 71045437 71045710 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042830.1 MGP_C57BL6NJ_G0022689.1 mouse_genomes_project 15 103130264 103138726 + MGP_C57BL6NJ_P0042830 Slc48a1 protein_coding protein_coding MGP_C57BL6NJ_T0042831.1 MGP_C57BL6NJ_G0022689.1 mouse_genomes_project 15 103130337 103135997 + MGP_C57BL6NJ_P0042831 Slc48a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003765.1 MGP_C57BL6NJ_G0003401.1 mouse_genomes_project 15 82261015 82262710 - 1700027A07Rik antisense antisense MGP_C57BL6NJ_T0003790.1 MGP_C57BL6NJ_G0003420.1 mouse_genomes_project 15 105665006 105666179 - 2310068J16Rik antisense antisense MGP_C57BL6NJ_T0041949.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79687167 79785631 - MGP_C57BL6NJ_P0041949 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041950.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79687167 79785718 - MGP_C57BL6NJ_P0041950 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041951.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79688042 79688786 - Arhgap39 protein_coding retained_intron MGP_C57BL6NJ_T0041952.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79696638 79785677 - Arhgap39 protein_coding retained_intron MGP_C57BL6NJ_T0041953.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79715878 79760253 - MGP_C57BL6NJ_P0041953 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041954.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79722268 79785654 - MGP_C57BL6NJ_P0041954 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041955.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79722272 79785544 - MGP_C57BL6NJ_P0041955 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041956.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79729299 79785689 - Arhgap39 protein_coding retained_intron MGP_C57BL6NJ_T0041957.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79729749 79785518 - MGP_C57BL6NJ_P0041957 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041958.1 MGP_C57BL6NJ_G0022419.1 mouse_genomes_project 15 79729765 79785624 - MGP_C57BL6NJ_P0041958 Arhgap39 protein_coding protein_coding MGP_C57BL6NJ_T0041575.1 MGP_C57BL6NJ_G0022321.1 mouse_genomes_project 15 74964916 75010976 - MGP_C57BL6NJ_P0041575 Kcnk9 protein_coding protein_coding MGP_C57BL6NJ_T0017909.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37286452 37297877 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0017910.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37287430 37294082 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0017911.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37287621 37297361 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0017912.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37287737 37297875 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0017913.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37287890 37297866 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0017914.1 MGP_C57BL6NJ_G0015685.1 mouse_genomes_project 15 37292609 37298627 - Gm15941 processed_transcript processed_transcript MGP_C57BL6NJ_T0006936.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63695230 63927112 + lincRNA lincRNA MGP_C57BL6NJ_T0006937.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63695282 63936229 + lincRNA lincRNA MGP_C57BL6NJ_T0006938.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63695291 63927108 + lincRNA lincRNA MGP_C57BL6NJ_T0006939.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63695294 64061779 + lincRNA lincRNA MGP_C57BL6NJ_T0006940.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63695305 63928557 + lincRNA lincRNA MGP_C57BL6NJ_T0006941.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63696501 63926807 + lincRNA lincRNA MGP_C57BL6NJ_T0006942.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63764364 63776020 + lincRNA lincRNA MGP_C57BL6NJ_T0006943.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63856298 63928559 + lincRNA lincRNA MGP_C57BL6NJ_T0006944.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63898094 63927110 + lincRNA lincRNA MGP_C57BL6NJ_T0006945.1 MGP_C57BL6NJ_G0005726.1 mouse_genomes_project 15 63902474 63920089 + lincRNA lincRNA MGP_C57BL6NJ_T0010303.1 MGP_C57BL6NJ_G0008388.1 mouse_genomes_project 15 103963105 103963222 - Mir1291 miRNA miRNA MGP_C57BL6NJ_T0042734.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96390667 96547033 + MGP_C57BL6NJ_P0042734 Lrrk2 protein_coding protein_coding MGP_C57BL6NJ_T0042735.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96390773 96546592 + MGP_C57BL6NJ_P0042735 Lrrk2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042736.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96464746 96516294 + Lrrk2 protein_coding processed_transcript MGP_C57BL6NJ_T0042737.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96499672 96505819 + Lrrk2 protein_coding processed_transcript MGP_C57BL6NJ_T0042738.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96507705 96546939 + Lrrk2 protein_coding processed_transcript MGP_C57BL6NJ_T0042739.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96539294 96546939 + Lrrk2 protein_coding retained_intron MGP_C57BL6NJ_T0042740.1 MGP_C57BL6NJ_G0022659.1 mouse_genomes_project 15 96545684 96547032 + Lrrk2 protein_coding retained_intron MGP_C57BL6NJ_T0043303.1 MGP_C57BL6NJ_G0022855.1 mouse_genomes_project 15 109498240 109522881 - MGP_C57BL6NJ_P0043303 Itga5 protein_coding protein_coding MGP_C57BL6NJ_T0041650.1 MGP_C57BL6NJ_G0022347.1 mouse_genomes_project 15 77424031 77425268 - protein_coding processed_transcript MGP_C57BL6NJ_T0041651.1 MGP_C57BL6NJ_G0022347.1 mouse_genomes_project 15 77424031 77425268 - protein_coding processed_transcript MGP_C57BL6NJ_T0041652.1 MGP_C57BL6NJ_G0022347.1 mouse_genomes_project 15 77424031 77429387 - MGP_C57BL6NJ_P0041652 protein_coding protein_coding MGP_C57BL6NJ_T0041981.1 MGP_C57BL6NJ_G0022430.1 mouse_genomes_project 15 80537591 80588810 + MGP_C57BL6NJ_P0041981 Apol10a protein_coding protein_coding MGP_C57BL6NJ_T0041983.1 MGP_C57BL6NJ_G0022430.1 mouse_genomes_project 15 80577338 80589788 + MGP_C57BL6NJ_P0041983 Apol10a protein_coding protein_coding MGP_C57BL6NJ_T0043214.1 MGP_C57BL6NJ_G0022828.1 mouse_genomes_project 15 108523952 108533256 + MGP_C57BL6NJ_P0043214 Amhr2 protein_coding protein_coding MGP_C57BL6NJ_T0043215.1 MGP_C57BL6NJ_G0022828.1 mouse_genomes_project 15 108530784 108533171 + MGP_C57BL6NJ_P0043215 Amhr2 protein_coding protein_coding MGP_C57BL6NJ_T0043216.1 MGP_C57BL6NJ_G0022828.1 mouse_genomes_project 15 108530948 108531497 + Amhr2 protein_coding retained_intron MGP_C57BL6NJ_T0042236.1 MGP_C57BL6NJ_G0022507.1 mouse_genomes_project 15 83765877 83768234 + MGP_C57BL6NJ_P0042236 Atf4 protein_coding protein_coding MGP_C57BL6NJ_T0041797.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79141823 79144373 - MGP_C57BL6NJ_P0041797 Parp10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041798.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79143652 79159897 - Parp10 protein_coding retained_intron MGP_C57BL6NJ_T0041799.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79143652 79159883 - MGP_C57BL6NJ_P0041799 Parp10 protein_coding protein_coding MGP_C57BL6NJ_T0041800.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79143652 79159904 - MGP_C57BL6NJ_P0041800 Parp10 protein_coding protein_coding MGP_C57BL6NJ_T0041801.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79144039 79144903 - Parp10 protein_coding processed_transcript MGP_C57BL6NJ_T0041802.1 MGP_C57BL6NJ_G0022385.1 mouse_genomes_project 15 79144388 79145123 - Parp10 protein_coding retained_intron MGP_C57BL6NJ_T0006930.1 MGP_C57BL6NJ_G0005723.1 mouse_genomes_project 15 46732331 46790759 + 1700022A22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006931.1 MGP_C57BL6NJ_G0005723.1 mouse_genomes_project 15 46732343 46767351 + 1700022A22Rik lincRNA lincRNA MGP_C57BL6NJ_T0006932.1 MGP_C57BL6NJ_G0005723.1 mouse_genomes_project 15 46732357 46790808 + 1700022A22Rik lincRNA lincRNA MGP_C57BL6NJ_T0013411.1 MGP_C57BL6NJ_G0011456.1 mouse_genomes_project 15 80853766 80865726 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042878.1 MGP_C57BL6NJ_G0022702.1 mouse_genomes_project 15 103717126 103718086 - MGP_C57BL6NJ_P0042878 Olfr285 protein_coding protein_coding MGP_C57BL6NJ_T0010281.1 MGP_C57BL6NJ_G0008366.1 mouse_genomes_project 15 85930453 85930522 + Mir33 miRNA miRNA MGP_C57BL6NJ_T0010277.1 MGP_C57BL6NJ_G0008362.1 mouse_genomes_project 15 83556810 83556918 - Snord43 miRNA miRNA MGP_C57BL6NJ_T0010268.1 MGP_C57BL6NJ_G0008353.1 mouse_genomes_project 15 79374546 79374606 + Mir6954 miRNA miRNA MGP_C57BL6NJ_T0042856.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103412913 103467583 - MGP_C57BL6NJ_P0042856 Senp1 protein_coding protein_coding MGP_C57BL6NJ_T0042857.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103413309 103438790 - Senp1 protein_coding retained_intron MGP_C57BL6NJ_T0042858.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103413470 103468453 - MGP_C57BL6NJ_P0042858 Senp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042859.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103413810 103468135 - MGP_C57BL6NJ_P0042859 Senp1 protein_coding protein_coding MGP_C57BL6NJ_T0042860.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103414963 103422423 - Senp1 protein_coding processed_transcript MGP_C57BL6NJ_T0042861.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103437656 103468254 - Senp1 protein_coding retained_intron MGP_C57BL6NJ_T0042862.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103459925 103462428 - MGP_C57BL6NJ_P0042862 Senp1 protein_coding protein_coding MGP_C57BL6NJ_T0042863.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103463440 103468189 - Senp1 protein_coding processed_transcript MGP_C57BL6NJ_T0042864.1 MGP_C57BL6NJ_G0022694.1 mouse_genomes_project 15 103464074 103467771 - Senp1 protein_coding processed_transcript MGP_C57BL6NJ_T0010317.1 MGP_C57BL6NJ_G0008402.1 mouse_genomes_project 15 109429776 109429873 + Mir148b miRNA miRNA MGP_C57BL6NJ_T0043188.1 MGP_C57BL6NJ_G0022822.1 mouse_genomes_project 15 108340923 108376937 + MGP_C57BL6NJ_P0043188 Espl1 protein_coding protein_coding MGP_C57BL6NJ_T0042115.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606278 82626458 + MGP_C57BL6NJ_P0042115 Pick1 protein_coding protein_coding MGP_C57BL6NJ_T0042116.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606487 82626440 + MGP_C57BL6NJ_P0042116 Pick1 protein_coding protein_coding MGP_C57BL6NJ_T0042117.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606496 82633646 + MGP_C57BL6NJ_P0042117 Pick1 protein_coding protein_coding MGP_C57BL6NJ_T0042118.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606516 82624937 + Pick1 protein_coding retained_intron MGP_C57BL6NJ_T0042119.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606521 82624937 + Pick1 protein_coding retained_intron MGP_C57BL6NJ_T0042120.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606563 82611397 + Pick1 protein_coding processed_transcript MGP_C57BL6NJ_T0042121.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606610 82618417 + Pick1 protein_coding retained_intron MGP_C57BL6NJ_T0042122.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82606807 82626303 + MGP_C57BL6NJ_P0042122 Pick1 protein_coding protein_coding MGP_C57BL6NJ_T0042123.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82619996 82624606 + Pick1 protein_coding processed_transcript MGP_C57BL6NJ_T0042124.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82621858 82624581 + Pick1 protein_coding processed_transcript MGP_C57BL6NJ_T0042125.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82622255 82624708 + Pick1 protein_coding processed_transcript MGP_C57BL6NJ_T0042126.1 MGP_C57BL6NJ_G0022478.1 mouse_genomes_project 15 82623316 82626440 + Pick1 protein_coding processed_transcript MGP_C57BL6NJ_T0102872.1 MGP_C57BL6NJ_G0040666.1 mouse_genomes_project 15 78070107 78073257 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0041887.1 MGP_C57BL6NJ_G0022403.1 mouse_genomes_project 15 79458283 79465791 - MGP_C57BL6NJ_P0041887 Scrt1 protein_coding protein_coding MGP_C57BL6NJ_T0041888.1 MGP_C57BL6NJ_G0022403.1 mouse_genomes_project 15 79460071 79465564 - MGP_C57BL6NJ_P0041888 Scrt1 protein_coding protein_coding MGP_C57BL6NJ_T0101287.1 MGP_C57BL6NJ_G0039333.1 mouse_genomes_project 15 45256000 45256143 + Gm23343 snoRNA snoRNA MGP_C57BL6NJ_T0001068.1 MGP_C57BL6NJ_G0000977.1 mouse_genomes_project 15 24209439 24209954 - TEC TEC MGP_C57BL6NJ_T0010298.1 MGP_C57BL6NJ_G0008383.1 mouse_genomes_project 15 93618958 93619019 - Mir7118 miRNA miRNA MGP_C57BL6NJ_T0042409.1 MGP_C57BL6NJ_G0022563.1 mouse_genomes_project 15 86613781 86619330 - MGP_C57BL6NJ_P0042409 Cyp2d40 protein_coding protein_coding MGP_C57BL6NJ_T0043008.1 MGP_C57BL6NJ_G0022747.1 mouse_genomes_project 15 105325361 105357284 + MGP_C57BL6NJ_P0043008 Asic1 protein_coding protein_coding MGP_C57BL6NJ_T0042675.1 MGP_C57BL6NJ_G0022643.1 mouse_genomes_project 15 93873028 93897104 - MGP_C57BL6NJ_P0042675 Syce3 protein_coding protein_coding MGP_C57BL6NJ_T0042676.1 MGP_C57BL6NJ_G0022643.1 mouse_genomes_project 15 93873028 93897344 - MGP_C57BL6NJ_P0042676 Syce3 protein_coding protein_coding MGP_C57BL6NJ_T0042694.1 MGP_C57BL6NJ_G0022648.1 mouse_genomes_project 15 93972468 93977418 - MGP_C57BL6NJ_P0042694 Arsa protein_coding protein_coding MGP_C57BL6NJ_T0042695.1 MGP_C57BL6NJ_G0022648.1 mouse_genomes_project 15 93972520 93976106 - Arsa protein_coding retained_intron MGP_C57BL6NJ_T0042696.1 MGP_C57BL6NJ_G0022648.1 mouse_genomes_project 15 93973232 93974264 - MGP_C57BL6NJ_P0042696 Arsa protein_coding protein_coding MGP_C57BL6NJ_T0042697.1 MGP_C57BL6NJ_G0022648.1 mouse_genomes_project 15 93976223 93977404 - Arsa protein_coding processed_transcript MGP_C57BL6NJ_T0003758.1 MGP_C57BL6NJ_G0003395.1 mouse_genomes_project 15 68831853 68837122 - Gm17140 antisense antisense MGP_C57BL6NJ_T0043289.1 MGP_C57BL6NJ_G0022850.1 mouse_genomes_project 15 109380120 109385930 + MGP_C57BL6NJ_P0043289 Hnrnpa1 protein_coding protein_coding MGP_C57BL6NJ_T0041165.1 MGP_C57BL6NJ_G0022175.1 mouse_genomes_project 15 31053193 31079887 + Fam173b protein_coding processed_transcript MGP_C57BL6NJ_T0041166.1 MGP_C57BL6NJ_G0022175.1 mouse_genomes_project 15 31053459 31074114 + MGP_C57BL6NJ_P0041166 Fam173b protein_coding protein_coding MGP_C57BL6NJ_T0041167.1 MGP_C57BL6NJ_G0022175.1 mouse_genomes_project 15 31053459 31075188 + MGP_C57BL6NJ_P0041167 Fam173b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043153.1 MGP_C57BL6NJ_G0022807.1 mouse_genomes_project 15 107921353 107927553 - MGP_C57BL6NJ_P0043153 Krt4 protein_coding protein_coding MGP_C57BL6NJ_T0041602.1 MGP_C57BL6NJ_G0022329.1 mouse_genomes_project 15 76238929 76253886 - MGP_C57BL6NJ_P0041602 Gpr20 protein_coding protein_coding MGP_C57BL6NJ_T0041287.1 MGP_C57BL6NJ_G0022217.1 mouse_genomes_project 15 38854830 38886572 + MGP_C57BL6NJ_P0041287 Fzd6 protein_coding protein_coding MGP_C57BL6NJ_T0041288.1 MGP_C57BL6NJ_G0022217.1 mouse_genomes_project 15 38854883 38886572 + MGP_C57BL6NJ_P0041288 Fzd6 protein_coding protein_coding MGP_C57BL6NJ_T0040996.1 MGP_C57BL6NJ_G0022118.1 mouse_genomes_project 15 6435219 6499884 + MGP_C57BL6NJ_P0040996 Lmbrd2 protein_coding protein_coding MGP_C57BL6NJ_T0041137.1 MGP_C57BL6NJ_G0022162.1 mouse_genomes_project 15 26579697 26715700 + MGP_C57BL6NJ_P0041137 Ank protein_coding protein_coding MGP_C57BL6NJ_T0041138.1 MGP_C57BL6NJ_G0022162.1 mouse_genomes_project 15 26691462 26713954 + Ank protein_coding retained_intron MGP_C57BL6NJ_T0042192.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83273980 83284357 - MGP_C57BL6NJ_P0042192 Cbx6 protein_coding protein_coding MGP_C57BL6NJ_T0042193.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83276223 83284320 - MGP_C57BL6NJ_P0042193 Cbx6 protein_coding protein_coding MGP_C57BL6NJ_T0042194.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83278718 83283881 - Cbx6 protein_coding processed_transcript MGP_C57BL6NJ_T0042195.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83278859 83284363 - MGP_C57BL6NJ_P0042195 Cbx6 protein_coding protein_coding MGP_C57BL6NJ_T0042196.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83282654 83284408 - Cbx6 protein_coding processed_transcript MGP_C57BL6NJ_T0042197.1 MGP_C57BL6NJ_G0022498.1 mouse_genomes_project 15 83283327 83284357 - Cbx6 protein_coding processed_transcript MGP_C57BL6NJ_T0041935.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673811 79676753 + MGP_C57BL6NJ_P0041935 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041936.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673826 79680882 + MGP_C57BL6NJ_P0041936 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041937.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673827 79678218 + MGP_C57BL6NJ_P0041937 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041938.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673831 79678267 + MGP_C57BL6NJ_P0041938 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041939.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673831 79678235 + MGP_C57BL6NJ_P0041939 Lrrc14 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041940.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673837 79676106 + MGP_C57BL6NJ_P0041940 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041941.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673851 79678313 + Lrrc14 protein_coding retained_intron MGP_C57BL6NJ_T0041942.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673861 79679831 + Lrrc14 protein_coding retained_intron MGP_C57BL6NJ_T0041943.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673861 79677932 + Lrrc14 protein_coding processed_transcript MGP_C57BL6NJ_T0041944.1 MGP_C57BL6NJ_G0022417.1 mouse_genomes_project 15 79673919 79678274 + MGP_C57BL6NJ_P0041944 Lrrc14 protein_coding protein_coding MGP_C57BL6NJ_T0041325.1 MGP_C57BL6NJ_G0022236.1 mouse_genomes_project 15 44709873 44719400 + MGP_C57BL6NJ_P0041325 Eny2 protein_coding protein_coding MGP_C57BL6NJ_T0010241.1 MGP_C57BL6NJ_G0008326.1 mouse_genomes_project 15 19422185 19422292 + Gm27397 miRNA miRNA MGP_C57BL6NJ_T0040946.1 MGP_C57BL6NJ_G0022105.1 mouse_genomes_project 15 3858145 3954859 + MGP_C57BL6NJ_P0040946 Rictor protein_coding protein_coding MGP_C57BL6NJ_T0013382.1 MGP_C57BL6NJ_G0011427.1 mouse_genomes_project 15 21673269 21675024 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040972.1 MGP_C57BL6NJ_G0022113.1 mouse_genomes_project 15 5548381 5708800 - MGP_C57BL6NJ_P0040972 Nipbl protein_coding protein_coding MGP_C57BL6NJ_T0010302.1 MGP_C57BL6NJ_G0008387.1 mouse_genomes_project 15 101616812 101616904 + Gm25397 miRNA miRNA MGP_C57BL6NJ_T0041633.1 MGP_C57BL6NJ_G0022337.1 mouse_genomes_project 15 77311177 77313408 + MGP_C57BL6NJ_P0041633 Psca protein_coding protein_coding MGP_C57BL6NJ_T0042879.1 MGP_C57BL6NJ_G0022703.1 mouse_genomes_project 15 103751271 103752189 - MGP_C57BL6NJ_P0042879 Olfr284 protein_coding protein_coding MGP_C57BL6NJ_T0042880.1 MGP_C57BL6NJ_G0022703.1 mouse_genomes_project 15 103751271 103752237 - MGP_C57BL6NJ_P0042880 Olfr284 protein_coding protein_coding MGP_C57BL6NJ_T0041803.1 MGP_C57BL6NJ_G0022386.1 mouse_genomes_project 15 79163269 79166367 + MGP_C57BL6NJ_P0041803 Grina protein_coding protein_coding MGP_C57BL6NJ_T0006926.1 MGP_C57BL6NJ_G0005719.1 mouse_genomes_project 15 41853684 41885105 - Gm26854 lincRNA lincRNA MGP_C57BL6NJ_T0013376.1 MGP_C57BL6NJ_G0011421.1 mouse_genomes_project 15 7956235 7957490 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101299.1 MGP_C57BL6NJ_G0039345.1 mouse_genomes_project 15 78623838 78623969 + Gm23747 snoRNA snoRNA MGP_C57BL6NJ_T0041920.1 MGP_C57BL6NJ_G0022411.1 mouse_genomes_project 15 79618665 79625936 + MGP_C57BL6NJ_P0041920 Kifc2 protein_coding protein_coding MGP_C57BL6NJ_T0006987.1 MGP_C57BL6NJ_G0005758.1 mouse_genomes_project 15 109259092 109282912 - D930007P13Rik lincRNA lincRNA MGP_C57BL6NJ_T0042385.1 MGP_C57BL6NJ_G0022548.1 mouse_genomes_project 15 85994396 86004651 + MGP_C57BL6NJ_P0042385 1500009C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0042386.1 MGP_C57BL6NJ_G0022548.1 mouse_genomes_project 15 85999799 86004666 + MGP_C57BL6NJ_P0042386 1500009C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0041632.1 MGP_C57BL6NJ_G0022336.1 mouse_genomes_project 15 77298639 77305874 - MGP_C57BL6NJ_P0041632 Jrk protein_coding protein_coding MGP_C57BL6NJ_T0013401.1 MGP_C57BL6NJ_G0011446.1 mouse_genomes_project 15 63898092 63899204 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0006963.1 MGP_C57BL6NJ_G0005740.1 mouse_genomes_project 15 89766474 89772644 + D130051D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0042433.1 MGP_C57BL6NJ_G0022568.1 mouse_genomes_project 15 87009686 87022352 - MGP_C57BL6NJ_P0042433 Rrp7a protein_coding protein_coding MGP_C57BL6NJ_T0042435.1 MGP_C57BL6NJ_G0022568.1 mouse_genomes_project 15 87012101 87017199 - MGP_C57BL6NJ_P0042435 Rrp7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042436.1 MGP_C57BL6NJ_G0022568.1 mouse_genomes_project 15 87016808 87017929 - Rrp7a protein_coding retained_intron MGP_C57BL6NJ_T0042437.1 MGP_C57BL6NJ_G0022568.1 mouse_genomes_project 15 87018834 87021729 - MGP_C57BL6NJ_P0042437 Rrp7a protein_coding protein_coding MGP_C57BL6NJ_T0042438.1 MGP_C57BL6NJ_G0022568.1 mouse_genomes_project 15 87018860 87022302 - MGP_C57BL6NJ_P0042438 Rrp7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043261.1 MGP_C57BL6NJ_G0022837.1 mouse_genomes_project 15 108760881 108769054 - MGP_C57BL6NJ_P0043261 Atp5g2 protein_coding protein_coding MGP_C57BL6NJ_T0043262.1 MGP_C57BL6NJ_G0022837.1 mouse_genomes_project 15 108761031 108765676 - MGP_C57BL6NJ_P0043262 Atp5g2 protein_coding protein_coding MGP_C57BL6NJ_T0043263.1 MGP_C57BL6NJ_G0022837.1 mouse_genomes_project 15 108762756 108765670 - MGP_C57BL6NJ_P0043263 Atp5g2 protein_coding protein_coding MGP_C57BL6NJ_T0043264.1 MGP_C57BL6NJ_G0022837.1 mouse_genomes_project 15 108763818 108770279 - MGP_C57BL6NJ_P0043264 Atp5g2 protein_coding protein_coding MGP_C57BL6NJ_T0006985.1 MGP_C57BL6NJ_G0005756.1 mouse_genomes_project 15 109230252 109236202 - Gm28876 lincRNA lincRNA MGP_C57BL6NJ_T0010244.1 MGP_C57BL6NJ_G0008329.1 mouse_genomes_project 15 26691507 26691572 + Mir7117 miRNA miRNA MGP_C57BL6NJ_T0001072.1 MGP_C57BL6NJ_G0000981.1 mouse_genomes_project 15 70479623 70482545 - TEC TEC MGP_C57BL6NJ_T0041070.1 MGP_C57BL6NJ_G0022141.1 mouse_genomes_project 15 9783602 9852953 + MGP_C57BL6NJ_P0041070 Mtmr12 protein_coding protein_coding MGP_C57BL6NJ_T0041071.1 MGP_C57BL6NJ_G0022141.1 mouse_genomes_project 15 9783659 9852707 + MGP_C57BL6NJ_P0041071 Mtmr12 protein_coding protein_coding MGP_C57BL6NJ_T0041072.1 MGP_C57BL6NJ_G0022141.1 mouse_genomes_project 15 9783678 9852832 + MGP_C57BL6NJ_P0041072 Mtmr12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041073.1 MGP_C57BL6NJ_G0022141.1 mouse_genomes_project 15 9783692 9852950 + MGP_C57BL6NJ_P0041073 Mtmr12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041074.1 MGP_C57BL6NJ_G0022141.1 mouse_genomes_project 15 9801910 9823594 + Mtmr12 protein_coding processed_transcript MGP_C57BL6NJ_T0042719.1 MGP_C57BL6NJ_G0022654.1 mouse_genomes_project 15 95065531 95264330 - MGP_C57BL6NJ_P0042719 Cpne8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042720.1 MGP_C57BL6NJ_G0022654.1 mouse_genomes_project 15 95065532 95264391 - MGP_C57BL6NJ_P0042720 Cpne8 protein_coding protein_coding MGP_C57BL6NJ_T0042721.1 MGP_C57BL6NJ_G0022654.1 mouse_genomes_project 15 95230553 95264335 - Cpne8 protein_coding retained_intron MGP_C57BL6NJ_T0011664.1 MGP_C57BL6NJ_G0009749.1 mouse_genomes_project 15 109080020 109080177 + Gm27535 misc_RNA misc_RNA MGP_C57BL6NJ_T0041478.1 MGP_C57BL6NJ_G0022296.1 mouse_genomes_project 15 65603060 65656018 - MGP_C57BL6NJ_P0041478 Gsdmc protein_coding protein_coding MGP_C57BL6NJ_T0041487.1 MGP_C57BL6NJ_G0022296.1 mouse_genomes_project 15 65605769 65644670 - MGP_C57BL6NJ_P0041487 Gsdmc protein_coding protein_coding MGP_C57BL6NJ_T0041654.1 MGP_C57BL6NJ_G0022348.1 mouse_genomes_project 15 77445221 77454664 - MGP_C57BL6NJ_P0041654 Cyp11b1 protein_coding protein_coding MGP_C57BL6NJ_T0042383.1 MGP_C57BL6NJ_G0022547.1 mouse_genomes_project 15 85975209 85986327 - MGP_C57BL6NJ_P0042383 Cenpm protein_coding protein_coding MGP_C57BL6NJ_T0042384.1 MGP_C57BL6NJ_G0022547.1 mouse_genomes_project 15 85975209 85986327 - MGP_C57BL6NJ_P0042384 Cenpm protein_coding protein_coding MGP_C57BL6NJ_T0099993.1 MGP_C57BL6NJ_G0038039.1 mouse_genomes_project 15 84625040 84625191 + Gm25131 snRNA snRNA MGP_C57BL6NJ_T0041414.1 MGP_C57BL6NJ_G0022268.1 mouse_genomes_project 15 59243587 59269426 - MGP_C57BL6NJ_P0041414 Derl1 protein_coding protein_coding MGP_C57BL6NJ_T0041997.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80961961 81044912 - MGP_C57BL6NJ_P0041997 Myh9 protein_coding protein_coding MGP_C57BL6NJ_T0041998.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80966702 80968565 - Myh9 protein_coding retained_intron MGP_C57BL6NJ_T0041999.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80989565 81044793 - Myh9 protein_coding retained_intron MGP_C57BL6NJ_T0042000.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80991599 81044842 - Myh9 protein_coding retained_intron MGP_C57BL6NJ_T0042001.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80992115 81044784 - MGP_C57BL6NJ_P0042001 Myh9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042002.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 80996042 81014627 - Myh9 protein_coding processed_transcript MGP_C57BL6NJ_T0042003.1 MGP_C57BL6NJ_G0022441.1 mouse_genomes_project 15 81006941 81044842 - Myh9 protein_coding retained_intron MGP_C57BL6NJ_T0099970.1 MGP_C57BL6NJ_G0038016.1 mouse_genomes_project 15 47448041 47448103 - Gm23665 snRNA snRNA MGP_C57BL6NJ_T0041160.1 MGP_C57BL6NJ_G0022174.1 mouse_genomes_project 15 31038546 31053189 - MGP_C57BL6NJ_P0041160 Cct5 protein_coding protein_coding MGP_C57BL6NJ_T0041161.1 MGP_C57BL6NJ_G0022174.1 mouse_genomes_project 15 31039728 31040808 - Cct5 protein_coding retained_intron MGP_C57BL6NJ_T0041162.1 MGP_C57BL6NJ_G0022174.1 mouse_genomes_project 15 31041191 31042275 - Cct5 protein_coding retained_intron MGP_C57BL6NJ_T0041163.1 MGP_C57BL6NJ_G0022174.1 mouse_genomes_project 15 31042091 31052881 - MGP_C57BL6NJ_P0041163 Cct5 protein_coding protein_coding MGP_C57BL6NJ_T0041164.1 MGP_C57BL6NJ_G0022174.1 mouse_genomes_project 15 31043187 31053082 - Cct5 protein_coding retained_intron MGP_C57BL6NJ_T0001066.1 MGP_C57BL6NJ_G0000975.1 mouse_genomes_project 15 18677006 18679360 - TEC TEC MGP_C57BL6NJ_T0017924.1 MGP_C57BL6NJ_G0015689.1 mouse_genomes_project 15 66031502 66034072 + Gm20717 processed_transcript processed_transcript MGP_C57BL6NJ_T0042518.1 MGP_C57BL6NJ_G0022593.1 mouse_genomes_project 15 88983015 88992606 - MGP_C57BL6NJ_P0042518 Gm29666 protein_coding protein_coding MGP_C57BL6NJ_T0043204.1 MGP_C57BL6NJ_G0022825.1 mouse_genomes_project 15 108393190 108401336 - MGP_C57BL6NJ_P0043204 Aaas protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043159.1 MGP_C57BL6NJ_G0022813.1 mouse_genomes_project 15 108131488 108144902 + MGP_C57BL6NJ_P0043159 Tns2 protein_coding protein_coding MGP_C57BL6NJ_T0043160.1 MGP_C57BL6NJ_G0022813.1 mouse_genomes_project 15 108131488 108144892 + MGP_C57BL6NJ_P0043160 Tns2 protein_coding protein_coding MGP_C57BL6NJ_T0041546.1 MGP_C57BL6NJ_G0022314.1 mouse_genomes_project 15 68989334 69021192 + MGP_C57BL6NJ_P0041546 Wisp1 protein_coding protein_coding MGP_C57BL6NJ_T0041547.1 MGP_C57BL6NJ_G0022314.1 mouse_genomes_project 15 68989401 69018068 + MGP_C57BL6NJ_P0041547 Wisp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041548.1 MGP_C57BL6NJ_G0022314.1 mouse_genomes_project 15 68989522 69017446 + MGP_C57BL6NJ_P0041548 Wisp1 protein_coding protein_coding MGP_C57BL6NJ_T0041549.1 MGP_C57BL6NJ_G0022314.1 mouse_genomes_project 15 69007325 69017226 + Wisp1 protein_coding processed_transcript MGP_C57BL6NJ_T0013416.1 MGP_C57BL6NJ_G0011461.1 mouse_genomes_project 15 85687243 85687699 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0041365.1 MGP_C57BL6NJ_G0022250.1 mouse_genomes_project 15 54541526 55005590 - Samd12 protein_coding processed_transcript MGP_C57BL6NJ_T0041366.1 MGP_C57BL6NJ_G0022250.1 mouse_genomes_project 15 54541706 55005583 - MGP_C57BL6NJ_P0041366 Samd12 protein_coding protein_coding MGP_C57BL6NJ_T0041367.1 MGP_C57BL6NJ_G0022250.1 mouse_genomes_project 15 54542099 55005434 - MGP_C57BL6NJ_P0041367 Samd12 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041368.1 MGP_C57BL6NJ_G0022250.1 mouse_genomes_project 15 54923608 55005590 - Samd12 protein_coding processed_transcript MGP_C57BL6NJ_T0043156.1 MGP_C57BL6NJ_G0022810.1 mouse_genomes_project 15 108004892 108012595 - MGP_C57BL6NJ_P0043156 Krt8 protein_coding protein_coding MGP_C57BL6NJ_T0013421.1 MGP_C57BL6NJ_G0011466.1 mouse_genomes_project 15 96225263 96226706 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099959.1 MGP_C57BL6NJ_G0038005.1 mouse_genomes_project 15 19648114 19648221 + Gm25101 snRNA snRNA MGP_C57BL6NJ_T0003774.1 MGP_C57BL6NJ_G0003407.1 mouse_genomes_project 15 90267409 90269829 - Gm15722 antisense antisense MGP_C57BL6NJ_T0042506.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88781243 88834052 + MGP_C57BL6NJ_P0042506 Arhgap8 protein_coding protein_coding MGP_C57BL6NJ_T0042507.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88781243 88834052 + MGP_C57BL6NJ_P0042507 Arhgap8 protein_coding protein_coding MGP_C57BL6NJ_T0042508.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88781274 88821029 + Arhgap8 protein_coding retained_intron MGP_C57BL6NJ_T0042509.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88794916 88834049 + MGP_C57BL6NJ_P0042509 Arhgap8 protein_coding protein_coding MGP_C57BL6NJ_T0042510.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88805697 88827869 + Arhgap8 protein_coding processed_transcript MGP_C57BL6NJ_T0042511.1 MGP_C57BL6NJ_G0022591.1 mouse_genomes_project 15 88831730 88833785 + Arhgap8 protein_coding retained_intron MGP_C57BL6NJ_T0041961.1 MGP_C57BL6NJ_G0022422.1 mouse_genomes_project 15 79890704 79892100 + MGP_C57BL6NJ_P0041961 Commd5 protein_coding protein_coding MGP_C57BL6NJ_T0041962.1 MGP_C57BL6NJ_G0022422.1 mouse_genomes_project 15 79890730 79891986 + MGP_C57BL6NJ_P0041962 Commd5 protein_coding protein_coding MGP_C57BL6NJ_T0041450.1 MGP_C57BL6NJ_G0022282.1 mouse_genomes_project 15 60297269 60298001 - MGP_C57BL6NJ_P0041450 Ube2d4 protein_coding protein_coding MGP_C57BL6NJ_T0100003.1 MGP_C57BL6NJ_G0038049.1 mouse_genomes_project 15 104975689 104975796 - Gm22951 snRNA snRNA MGP_C57BL6NJ_T0041637.1 MGP_C57BL6NJ_G0022340.1 mouse_genomes_project 15 77331924 77334007 - MGP_C57BL6NJ_P0041637 Lypd2 protein_coding protein_coding MGP_C57BL6NJ_T0041638.1 MGP_C57BL6NJ_G0022340.1 mouse_genomes_project 15 77332478 77333995 - Lypd2 protein_coding retained_intron MGP_C57BL6NJ_T0101305.1 MGP_C57BL6NJ_G0039351.1 mouse_genomes_project 15 100045356 100045488 - Gm23129 snoRNA snoRNA MGP_C57BL6NJ_T0042722.1 MGP_C57BL6NJ_G0022655.1 mouse_genomes_project 15 95567896 95710457 - MGP_C57BL6NJ_P0042722 Kif21a protein_coding protein_coding MGP_C57BL6NJ_T0042723.1 MGP_C57BL6NJ_G0022655.1 mouse_genomes_project 15 95567896 95710457 - MGP_C57BL6NJ_P0042723 Kif21a protein_coding protein_coding MGP_C57BL6NJ_T0042724.1 MGP_C57BL6NJ_G0022655.1 mouse_genomes_project 15 95567896 95710457 - MGP_C57BL6NJ_P0042724 Kif21a protein_coding protein_coding MGP_C57BL6NJ_T0042725.1 MGP_C57BL6NJ_G0022655.1 mouse_genomes_project 15 95567896 95710457 - MGP_C57BL6NJ_P0042725 Kif21a protein_coding protein_coding MGP_C57BL6NJ_T0042726.1 MGP_C57BL6NJ_G0022655.1 mouse_genomes_project 15 95567896 95710457 - MGP_C57BL6NJ_P0042726 Kif21a protein_coding protein_coding MGP_C57BL6NJ_T0041440.1 MGP_C57BL6NJ_G0022275.1 mouse_genomes_project 15 59540117 59559456 + MGP_C57BL6NJ_P0041440 Wdyhv1 protein_coding protein_coding MGP_C57BL6NJ_T0010242.1 MGP_C57BL6NJ_G0008327.1 mouse_genomes_project 15 20580770 20580939 - Gm44373 miRNA miRNA MGP_C57BL6NJ_T0041674.1 MGP_C57BL6NJ_G0022352.1 mouse_genomes_project 15 77613613 77617510 - MGP_C57BL6NJ_P0041674 Ly6i protein_coding protein_coding MGP_C57BL6NJ_T0041675.1 MGP_C57BL6NJ_G0022352.1 mouse_genomes_project 15 77613891 77617510 - MGP_C57BL6NJ_P0041675 Ly6i protein_coding protein_coding MGP_C57BL6NJ_T0042946.1 MGP_C57BL6NJ_G0022730.1 mouse_genomes_project 15 104629264 104640789 + MGP_C57BL6NJ_P0042946 Troap protein_coding protein_coding MGP_C57BL6NJ_T0041452.1 MGP_C57BL6NJ_G0022284.1 mouse_genomes_project 15 60339831 60353953 + MGP_C57BL6NJ_P0041452 Rnf139 protein_coding protein_coding MGP_C57BL6NJ_T0041299.1 MGP_C57BL6NJ_G0022223.1 mouse_genomes_project 15 39671980 39772049 - MGP_C57BL6NJ_P0041299 Dpys protein_coding protein_coding MGP_C57BL6NJ_T0041300.1 MGP_C57BL6NJ_G0022223.1 mouse_genomes_project 15 39686165 39772052 - MGP_C57BL6NJ_P0041300 Dpys protein_coding protein_coding MGP_C57BL6NJ_T0041301.1 MGP_C57BL6NJ_G0022223.1 mouse_genomes_project 15 39686172 39696641 - MGP_C57BL6NJ_P0041301 Dpys protein_coding protein_coding MGP_C57BL6NJ_T0041302.1 MGP_C57BL6NJ_G0022223.1 mouse_genomes_project 15 39771163 39772052 - Dpys protein_coding processed_transcript MGP_C57BL6NJ_T0101281.1 MGP_C57BL6NJ_G0039327.1 mouse_genomes_project 15 35125693 35125830 + Gm24771 snoRNA snoRNA MGP_C57BL6NJ_T0010291.1 MGP_C57BL6NJ_G0008376.1 mouse_genomes_project 15 87473770 87473847 + Gm24575 miRNA miRNA MGP_C57BL6NJ_T0101304.1 MGP_C57BL6NJ_G0039350.1 mouse_genomes_project 15 99708529 99708661 - Gm25546 snoRNA snoRNA MGP_C57BL6NJ_T0042340.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85579580 85622675 + MGP_C57BL6NJ_P0042340 Aco2 protein_coding protein_coding MGP_C57BL6NJ_T0042341.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85579755 85597112 + Aco2 protein_coding retained_intron MGP_C57BL6NJ_T0042342.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85579755 85597113 + Aco2 protein_coding processed_transcript MGP_C57BL6NJ_T0042343.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85614514 85618051 + Aco2 protein_coding retained_intron MGP_C57BL6NJ_T0042344.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85614794 85617705 + Aco2 protein_coding retained_intron MGP_C57BL6NJ_T0042345.1 MGP_C57BL6NJ_G0022534.1 mouse_genomes_project 15 85617830 85620835 + Aco2 protein_coding retained_intron MGP_C57BL6NJ_T0013377.1 MGP_C57BL6NJ_G0011422.1 mouse_genomes_project 15 12234553 12234956 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042605.1 MGP_C57BL6NJ_G0022626.1 mouse_genomes_project 15 93541879 93551008 + MGP_C57BL6NJ_P0042605 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042606.1 MGP_C57BL6NJ_G0022626.1 mouse_genomes_project 15 93541879 93553168 + MGP_C57BL6NJ_P0042606 protein_coding protein_coding MGP_C57BL6NJ_T0041048.1 MGP_C57BL6NJ_G0022132.1 mouse_genomes_project 15 8423923 8453407 + MGP_C57BL6NJ_P0041048 C1qtnf3 protein_coding protein_coding MGP_C57BL6NJ_T0041049.1 MGP_C57BL6NJ_G0022132.1 mouse_genomes_project 15 8423948 8452963 + MGP_C57BL6NJ_P0041049 C1qtnf3 protein_coding protein_coding MGP_C57BL6NJ_T0010304.1 MGP_C57BL6NJ_G0008389.1 mouse_genomes_project 15 104636249 104636310 + Mir6960 miRNA miRNA MGP_C57BL6NJ_T0043056.1 MGP_C57BL6NJ_G0022767.1 mouse_genomes_project 15 106296893 106315165 - MGP_C57BL6NJ_P0043056 Csrnp2 protein_coding protein_coding MGP_C57BL6NJ_T0041441.1 MGP_C57BL6NJ_G0022276.1 mouse_genomes_project 15 59576601 59615574 - MGP_C57BL6NJ_P0041441 Fbxo32 protein_coding protein_coding MGP_C57BL6NJ_T0043038.1 MGP_C57BL6NJ_G0022758.1 mouse_genomes_project 15 106010883 106040265 + MGP_C57BL6NJ_P0043038 Tmprss12 protein_coding protein_coding MGP_C57BL6NJ_T0042916.1 MGP_C57BL6NJ_G0022716.1 mouse_genomes_project 15 104129474 104144848 - MGP_C57BL6NJ_P0042916 Rnd1 protein_coding protein_coding MGP_C57BL6NJ_T0042917.1 MGP_C57BL6NJ_G0022716.1 mouse_genomes_project 15 104136331 104144849 - MGP_C57BL6NJ_P0042917 Rnd1 protein_coding protein_coding MGP_C57BL6NJ_T0042918.1 MGP_C57BL6NJ_G0022716.1 mouse_genomes_project 15 104139559 104144846 - MGP_C57BL6NJ_P0042918 Rnd1 protein_coding protein_coding MGP_C57BL6NJ_T0041855.1 MGP_C57BL6NJ_G0022395.1 mouse_genomes_project 15 79280519 79293069 + MGP_C57BL6NJ_P0041855 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0099969.1 MGP_C57BL6NJ_G0038015.1 mouse_genomes_project 15 46533028 46533135 - Gm26063 snRNA snRNA MGP_C57BL6NJ_T0043234.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108605931 108608666 + Tarbp2 protein_coding retained_intron MGP_C57BL6NJ_T0043235.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606112 108613539 + Tarbp2 protein_coding retained_intron MGP_C57BL6NJ_T0043236.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606140 108609435 + MGP_C57BL6NJ_P0043236 Tarbp2 protein_coding protein_coding MGP_C57BL6NJ_T0043237.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606158 108613505 + MGP_C57BL6NJ_P0043237 Tarbp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043238.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606183 108607406 + Tarbp2 protein_coding retained_intron MGP_C57BL6NJ_T0043239.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606242 108610736 + Tarbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0043240.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606253 108610025 + Tarbp2 protein_coding retained_intron MGP_C57BL6NJ_T0043241.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606411 108610237 + MGP_C57BL6NJ_P0043241 Tarbp2 protein_coding protein_coding MGP_C57BL6NJ_T0043242.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606484 108609766 + MGP_C57BL6NJ_P0043242 Tarbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043243.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108606487 108610588 + MGP_C57BL6NJ_P0043243 Tarbp2 protein_coding protein_coding MGP_C57BL6NJ_T0043244.1 MGP_C57BL6NJ_G0022833.1 mouse_genomes_project 15 108608725 108610126 + Tarbp2 protein_coding retained_intron MGP_C57BL6NJ_T0003766.1 MGP_C57BL6NJ_G0003402.1 mouse_genomes_project 15 82542119 82592535 + Gm10863 antisense antisense MGP_C57BL6NJ_T0003767.1 MGP_C57BL6NJ_G0003402.1 mouse_genomes_project 15 82542136 82592320 + Gm10863 antisense antisense MGP_C57BL6NJ_T0003768.1 MGP_C57BL6NJ_G0003402.1 mouse_genomes_project 15 82542144 82592649 + Gm10863 antisense antisense MGP_C57BL6NJ_T0003769.1 MGP_C57BL6NJ_G0003402.1 mouse_genomes_project 15 82585361 82593535 + Gm10863 antisense antisense MGP_C57BL6NJ_T0040882.1 MGP_C57BL6NJ_G0022087.1 mouse_genomes_project 15 173125 196029 - MGP_C57BL6NJ_P0040882 Ccdc152 protein_coding protein_coding MGP_C57BL6NJ_T0017935.1 MGP_C57BL6NJ_G0015698.1 mouse_genomes_project 15 84781651 84783641 + 4930483J18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017936.1 MGP_C57BL6NJ_G0015698.1 mouse_genomes_project 15 84781730 84783634 + 4930483J18Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0010297.1 MGP_C57BL6NJ_G0008382.1 mouse_genomes_project 15 92109387 92109481 - Mir6393 miRNA miRNA MGP_C57BL6NJ_T0017942.1 MGP_C57BL6NJ_G0015700.1 mouse_genomes_project 15 94024291 94027873 - Gm15609 processed_transcript processed_transcript MGP_C57BL6NJ_T0041550.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69027314 69068190 - MGP_C57BL6NJ_P0041550 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041551.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69028859 69032463 - Ndrg1 protein_coding retained_intron MGP_C57BL6NJ_T0041552.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69029070 69068189 - MGP_C57BL6NJ_P0041552 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041553.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69032151 69068189 - Ndrg1 protein_coding retained_intron MGP_C57BL6NJ_T0041554.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69040005 69068189 - MGP_C57BL6NJ_P0041554 Ndrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041555.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041067 69068189 - MGP_C57BL6NJ_P0041555 Ndrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041556.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041072 69046469 - MGP_C57BL6NJ_P0041556 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041557.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041072 69066475 - MGP_C57BL6NJ_P0041557 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041558.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041085 69068166 - MGP_C57BL6NJ_P0041558 Ndrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041559.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041090 69068145 - MGP_C57BL6NJ_P0041559 Ndrg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041560.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041122 69068166 - MGP_C57BL6NJ_P0041560 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041561.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69041129 69066490 - MGP_C57BL6NJ_P0041561 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041562.1 MGP_C57BL6NJ_G0022315.1 mouse_genomes_project 15 69044526 69068190 - MGP_C57BL6NJ_P0041562 Ndrg1 protein_coding protein_coding MGP_C57BL6NJ_T0041694.1 MGP_C57BL6NJ_G0022358.1 mouse_genomes_project 15 78047233 78050941 + MGP_C57BL6NJ_P0041694 Ly6f protein_coding protein_coding MGP_C57BL6NJ_T0041695.1 MGP_C57BL6NJ_G0022358.1 mouse_genomes_project 15 78047408 78050942 + MGP_C57BL6NJ_P0041695 Ly6f protein_coding protein_coding MGP_C57BL6NJ_T0099549.1 MGP_C57BL6NJ_G0037599.1 mouse_genomes_project 15 93320913 93322699 - Gm20621 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0099550.1 MGP_C57BL6NJ_G0037599.1 mouse_genomes_project 15 93321690 93322708 - Gm20621 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0099551.1 MGP_C57BL6NJ_G0037599.1 mouse_genomes_project 15 93321695 93322666 - Gm20621 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0013381.1 MGP_C57BL6NJ_G0011426.1 mouse_genomes_project 15 20498129 20498291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0040883.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 213639 502263 - MGP_C57BL6NJ_P0040883 Ghr protein_coding protein_coding MGP_C57BL6NJ_T0040884.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 214888 500881 - MGP_C57BL6NJ_P0040884 Ghr protein_coding protein_coding MGP_C57BL6NJ_T0040885.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 225084 502221 - MGP_C57BL6NJ_P0040885 Ghr protein_coding protein_coding MGP_C57BL6NJ_T0040886.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 225098 395324 - MGP_C57BL6NJ_P0040886 Ghr protein_coding protein_coding MGP_C57BL6NJ_T0040887.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 230998 501635 - MGP_C57BL6NJ_P0040887 Ghr protein_coding protein_coding MGP_C57BL6NJ_T0040888.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 238092 502221 - Ghr protein_coding processed_transcript MGP_C57BL6NJ_T0040889.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 242414 502245 - Ghr protein_coding retained_intron MGP_C57BL6NJ_T0040890.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 243696 502244 - Ghr protein_coding processed_transcript MGP_C57BL6NJ_T0040891.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 301205 502525 - Ghr protein_coding retained_intron MGP_C57BL6NJ_T0040892.1 MGP_C57BL6NJ_G0022088.1 mouse_genomes_project 15 459716 502220 - Ghr protein_coding processed_transcript MGP_C57BL6NJ_T0042648.1 MGP_C57BL6NJ_G0022635.1 mouse_genomes_project 15 93799335 93801092 + MGP_C57BL6NJ_P0042648 Adm2 protein_coding protein_coding MGP_C57BL6NJ_T0041587.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76043126 76106376 + MGP_C57BL6NJ_P0041587 Dennd3 protein_coding protein_coding MGP_C57BL6NJ_T0041588.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76043238 76106233 + MGP_C57BL6NJ_P0041588 Dennd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041589.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76049194 76055483 + Dennd3 protein_coding processed_transcript MGP_C57BL6NJ_T0041590.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76054279 76105088 + MGP_C57BL6NJ_P0041590 Dennd3 protein_coding protein_coding MGP_C57BL6NJ_T0041591.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76090842 76102245 + MGP_C57BL6NJ_P0041591 Dennd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041592.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76098999 76101215 + Dennd3 protein_coding retained_intron MGP_C57BL6NJ_T0041593.1 MGP_C57BL6NJ_G0022327.1 mouse_genomes_project 15 76101215 76105033 + Dennd3 protein_coding retained_intron MGP_C57BL6NJ_T0003745.1 MGP_C57BL6NJ_G0003384.1 mouse_genomes_project 15 2186707 2199104 - Gm15938 antisense antisense MGP_C57BL6NJ_T0042669.1 MGP_C57BL6NJ_G0022639.1 mouse_genomes_project 15 93852651 93854831 - MGP_C57BL6NJ_P0042669 Sco2 protein_coding protein_coding MGP_C57BL6NJ_T0101303.1 MGP_C57BL6NJ_G0039349.1 mouse_genomes_project 15 88347169 88347313 - Gm22890 snoRNA snoRNA MGP_C57BL6NJ_T0010290.1 MGP_C57BL6NJ_G0008375.1 mouse_genomes_project 15 86828779 86828858 - Mir3080 miRNA miRNA MGP_C57BL6NJ_T0010238.1 MGP_C57BL6NJ_G0008323.1 mouse_genomes_project 15 9739473 9739556 + Mir1898 miRNA miRNA MGP_C57BL6NJ_T0040908.1 MGP_C57BL6NJ_G0022094.1 mouse_genomes_project 15 1865021 1927761 + MGP_C57BL6NJ_P0040908 Mroh2b protein_coding protein_coding MGP_C57BL6NJ_T0098827.1 MGP_C57BL6NJ_G0036891.1 mouse_genomes_project 15 45183681 45185357 + pseudogene pseudogene MGP_C57BL6NJ_T0042728.1 MGP_C57BL6NJ_G0022657.1 mouse_genomes_project 15 95867290 95934908 + MGP_C57BL6NJ_P0042728 CN725425 protein_coding protein_coding MGP_C57BL6NJ_T0042729.1 MGP_C57BL6NJ_G0022657.1 mouse_genomes_project 15 95867372 95934908 + MGP_C57BL6NJ_P0042729 CN725425 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0042730.1 MGP_C57BL6NJ_G0022657.1 mouse_genomes_project 15 95905036 95934899 + MGP_C57BL6NJ_P0042730 CN725425 protein_coding protein_coding MGP_C57BL6NJ_T0043317.1 MGP_C57BL6NJ_G0022861.1 mouse_genomes_project 15 109744246 109746563 - MGP_C57BL6NJ_P0043317 Glycam1 protein_coding protein_coding MGP_C57BL6NJ_T0041805.1 MGP_C57BL6NJ_G0022388.1 mouse_genomes_project 15 79215103 79217566 + MGP_C57BL6NJ_P0041805 Smpd5 protein_coding protein_coding MGP_C57BL6NJ_T0041806.1 MGP_C57BL6NJ_G0022388.1 mouse_genomes_project 15 79215637 79216922 + MGP_C57BL6NJ_P0041806 Smpd5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041807.1 MGP_C57BL6NJ_G0022388.1 mouse_genomes_project 15 79215920 79217563 + Smpd5 protein_coding retained_intron MGP_C57BL6NJ_T0041808.1 MGP_C57BL6NJ_G0022388.1 mouse_genomes_project 15 79215978 79216543 + Smpd5 protein_coding retained_intron MGP_C57BL6NJ_T0042073.1 MGP_C57BL6NJ_G0022468.1 mouse_genomes_project 15 82290354 82299056 + MGP_C57BL6NJ_P0042073 Nol12 protein_coding protein_coding MGP_C57BL6NJ_T0042074.1 MGP_C57BL6NJ_G0022468.1 mouse_genomes_project 15 82290372 82296354 + MGP_C57BL6NJ_P0042074 Nol12 protein_coding protein_coding MGP_C57BL6NJ_T0042075.1 MGP_C57BL6NJ_G0022468.1 mouse_genomes_project 15 82290416 82296286 + MGP_C57BL6NJ_P0042075 Nol12 protein_coding protein_coding MGP_C57BL6NJ_T0042076.1 MGP_C57BL6NJ_G0022468.1 mouse_genomes_project 15 82290629 82292003 + MGP_C57BL6NJ_P0042076 Nol12 protein_coding protein_coding MGP_C57BL6NJ_T0042077.1 MGP_C57BL6NJ_G0022468.1 mouse_genomes_project 15 82291061 82296050 + MGP_C57BL6NJ_P0042077 Nol12 protein_coding protein_coding MGP_C57BL6NJ_T0040914.1 MGP_C57BL6NJ_G0022099.1 mouse_genomes_project 15 2152712 2195227 + MGP_C57BL6NJ_P0040914 Prkaa1 protein_coding protein_coding MGP_C57BL6NJ_T0102864.1 MGP_C57BL6NJ_G0040658.1 mouse_genomes_project 15 36008 37833 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099978.1 MGP_C57BL6NJ_G0038024.1 mouse_genomes_project 15 59541889 59541951 - Gm23475 snRNA snRNA MGP_C57BL6NJ_T0010301.1 MGP_C57BL6NJ_G0008386.1 mouse_genomes_project 15 94780333 94780386 + Mir7648 miRNA miRNA MGP_C57BL6NJ_T0041303.1 MGP_C57BL6NJ_G0022224.1 mouse_genomes_project 15 39787908 39873714 - MGP_C57BL6NJ_P0041303 Lrp12 protein_coding protein_coding MGP_C57BL6NJ_T0041304.1 MGP_C57BL6NJ_G0022224.1 mouse_genomes_project 15 39787908 39873508 - MGP_C57BL6NJ_P0041304 Lrp12 protein_coding protein_coding MGP_C57BL6NJ_T0041305.1 MGP_C57BL6NJ_G0022224.1 mouse_genomes_project 15 39828034 39873426 - Lrp12 protein_coding retained_intron MGP_C57BL6NJ_T0042351.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85661933 85672277 - MGP_C57BL6NJ_P0042351 Pmm1 protein_coding protein_coding MGP_C57BL6NJ_T0042352.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85661933 85672216 - MGP_C57BL6NJ_P0042352 Pmm1 protein_coding protein_coding MGP_C57BL6NJ_T0042353.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85662227 85664330 - Pmm1 protein_coding retained_intron MGP_C57BL6NJ_T0042354.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85662269 85672189 - MGP_C57BL6NJ_P0042354 Pmm1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042355.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85662372 85663090 - Pmm1 protein_coding retained_intron MGP_C57BL6NJ_T0042356.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85666674 85672180 - Pmm1 protein_coding retained_intron MGP_C57BL6NJ_T0042357.1 MGP_C57BL6NJ_G0022537.1 mouse_genomes_project 15 85668505 85672111 - Pmm1 protein_coding retained_intron MGP_C57BL6NJ_T0041172.1 MGP_C57BL6NJ_G0022179.1 mouse_genomes_project 15 32589865 33119116 + MGP_C57BL6NJ_P0041172 Cpq protein_coding protein_coding MGP_C57BL6NJ_T0040947.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 3970472 4035753 - MGP_C57BL6NJ_P0040947 Osmr protein_coding protein_coding MGP_C57BL6NJ_T0040948.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 3971932 4035753 - MGP_C57BL6NJ_P0040948 Osmr protein_coding protein_coding MGP_C57BL6NJ_T0040949.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 3977924 3981820 - Osmr protein_coding retained_intron MGP_C57BL6NJ_T0040950.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 3995287 4035052 - Osmr protein_coding retained_intron MGP_C57BL6NJ_T0040951.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 4002496 4035041 - Osmr protein_coding retained_intron MGP_C57BL6NJ_T0040952.1 MGP_C57BL6NJ_G0022106.1 mouse_genomes_project 15 4013514 4035080 - Osmr protein_coding retained_intron MGP_C57BL6NJ_T0101284.1 MGP_C57BL6NJ_G0039330.1 mouse_genomes_project 15 42049626 42049728 + Gm24751 snoRNA snoRNA MGP_C57BL6NJ_T0042165.1 MGP_C57BL6NJ_G0022489.1 mouse_genomes_project 15 83043262 83096604 - MGP_C57BL6NJ_P0042165 Fam227a protein_coding protein_coding MGP_C57BL6NJ_T0042166.1 MGP_C57BL6NJ_G0022489.1 mouse_genomes_project 15 83046791 83096441 - MGP_C57BL6NJ_P0042166 Fam227a protein_coding protein_coding MGP_C57BL6NJ_T0042167.1 MGP_C57BL6NJ_G0022489.1 mouse_genomes_project 15 83046845 83096441 - MGP_C57BL6NJ_P0042167 Fam227a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042168.1 MGP_C57BL6NJ_G0022489.1 mouse_genomes_project 15 83057866 83096387 - MGP_C57BL6NJ_P0042168 Fam227a protein_coding protein_coding MGP_C57BL6NJ_T0042169.1 MGP_C57BL6NJ_G0022489.1 mouse_genomes_project 15 83071217 83096604 - Fam227a protein_coding retained_intron MGP_C57BL6NJ_T0042174.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83166681 83185688 - Sun2 protein_coding retained_intron MGP_C57BL6NJ_T0042175.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83166681 83185766 - MGP_C57BL6NJ_P0042175 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0042176.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83166682 83185736 - MGP_C57BL6NJ_P0042176 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0042177.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83166684 83185768 - MGP_C57BL6NJ_P0042177 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0042178.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83172224 83185736 - Sun2 protein_coding retained_intron MGP_C57BL6NJ_T0042179.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83176190 83178034 - Sun2 protein_coding retained_intron MGP_C57BL6NJ_T0042180.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83181881 83185347 - MGP_C57BL6NJ_P0042180 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0042181.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83182963 83185335 - MGP_C57BL6NJ_P0042181 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0042182.1 MGP_C57BL6NJ_G0022494.1 mouse_genomes_project 15 83183070 83185324 - MGP_C57BL6NJ_P0042182 Sun2 protein_coding protein_coding MGP_C57BL6NJ_T0041006.1 MGP_C57BL6NJ_G0022122.1 mouse_genomes_project 15 6839449 6869294 - MGP_C57BL6NJ_P0041006 Il7r protein_coding protein_coding MGP_C57BL6NJ_T0041427.1 MGP_C57BL6NJ_G0022272.1 mouse_genomes_project 15 59414680 59466796 - MGP_C57BL6NJ_P0041427 Gm29394 protein_coding protein_coding MGP_C57BL6NJ_T0041430.1 MGP_C57BL6NJ_G0022272.1 mouse_genomes_project 15 59417396 59466578 - MGP_C57BL6NJ_P0041430 Gm29394 protein_coding protein_coding MGP_C57BL6NJ_T0041434.1 MGP_C57BL6NJ_G0022272.1 mouse_genomes_project 15 59435932 59466554 - MGP_C57BL6NJ_P0041434 Gm29394 protein_coding protein_coding MGP_C57BL6NJ_T0041435.1 MGP_C57BL6NJ_G0022272.1 mouse_genomes_project 15 59436051 59466577 - MGP_C57BL6NJ_P0041435 Gm29394 protein_coding protein_coding MGP_C57BL6NJ_T0003763.1 MGP_C57BL6NJ_G0003399.1 mouse_genomes_project 15 77380747 77397044 + Gm17189 antisense antisense MGP_C57BL6NJ_T0041934.1 MGP_C57BL6NJ_G0022416.1 mouse_genomes_project 15 79666809 79673748 - MGP_C57BL6NJ_P0041934 Recql4 protein_coding protein_coding MGP_C57BL6NJ_T0041025.1 MGP_C57BL6NJ_G0022126.1 mouse_genomes_project 15 7773653 7783738 + MGP_C57BL6NJ_P0041025 Agxt2 protein_coding protein_coding MGP_C57BL6NJ_T0041026.1 MGP_C57BL6NJ_G0022126.1 mouse_genomes_project 15 7773658 7829577 + MGP_C57BL6NJ_P0041026 Agxt2 protein_coding protein_coding MGP_C57BL6NJ_T0041027.1 MGP_C57BL6NJ_G0022126.1 mouse_genomes_project 15 7773658 7799392 + MGP_C57BL6NJ_P0041027 Agxt2 protein_coding protein_coding MGP_C57BL6NJ_T0041028.1 MGP_C57BL6NJ_G0022126.1 mouse_genomes_project 15 7773700 7829162 + MGP_C57BL6NJ_P0041028 Agxt2 protein_coding protein_coding MGP_C57BL6NJ_T0041470.1 MGP_C57BL6NJ_G0022294.1 mouse_genomes_project 15 62478427 62482109 - MGP_C57BL6NJ_P0041470 A1bg protein_coding protein_coding MGP_C57BL6NJ_T0041804.1 MGP_C57BL6NJ_G0022387.1 mouse_genomes_project 15 79187235 79213289 + MGP_C57BL6NJ_P0041804 Spatc1 protein_coding protein_coding MGP_C57BL6NJ_T0013393.1 MGP_C57BL6NJ_G0011438.1 mouse_genomes_project 15 45293894 45294236 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043141.1 MGP_C57BL6NJ_G0022796.1 mouse_genomes_project 15 107615318 107623426 - MGP_C57BL6NJ_P0043141 Gm5478 protein_coding protein_coding MGP_C57BL6NJ_T0013418.1 MGP_C57BL6NJ_G0011463.1 mouse_genomes_project 15 89209844 89210262 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042772.1 MGP_C57BL6NJ_G0022667.1 mouse_genomes_project 15 98394092 98505998 - MGP_C57BL6NJ_P0042772 Prickle1 protein_coding protein_coding MGP_C57BL6NJ_T0042773.1 MGP_C57BL6NJ_G0022667.1 mouse_genomes_project 15 98394092 98416321 - MGP_C57BL6NJ_P0042773 Prickle1 protein_coding protein_coding MGP_C57BL6NJ_T0041809.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79217266 79227771 - MGP_C57BL6NJ_P0041809 Oplah protein_coding protein_coding MGP_C57BL6NJ_T0041810.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79217272 79218162 - Oplah protein_coding retained_intron MGP_C57BL6NJ_T0041811.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79217272 79227915 - MGP_C57BL6NJ_P0041811 Oplah protein_coding protein_coding MGP_C57BL6NJ_T0041812.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79218012 79218710 - Oplah protein_coding retained_intron MGP_C57BL6NJ_T0041813.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79221256 79221785 - Oplah protein_coding retained_intron MGP_C57BL6NJ_T0041814.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79221545 79223032 - Oplah protein_coding retained_intron MGP_C57BL6NJ_T0041815.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79221623 79228059 - MGP_C57BL6NJ_P0041815 Oplah protein_coding protein_coding MGP_C57BL6NJ_T0041816.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79222733 79223870 - Oplah protein_coding processed_transcript MGP_C57BL6NJ_T0041817.1 MGP_C57BL6NJ_G0022389.1 mouse_genomes_project 15 79227156 79251507 - MGP_C57BL6NJ_P0041817 Oplah protein_coding protein_coding MGP_C57BL6NJ_T0041129.1 MGP_C57BL6NJ_G0022157.1 mouse_genomes_project 15 24877517 25018961 + MGP_C57BL6NJ_P0041129 Fam134b protein_coding protein_coding MGP_C57BL6NJ_T0041130.1 MGP_C57BL6NJ_G0022157.1 mouse_genomes_project 15 24985513 25017614 + MGP_C57BL6NJ_P0041130 Fam134b protein_coding protein_coding MGP_C57BL6NJ_T0041199.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34072810 34107103 + MGP_C57BL6NJ_P0041199 Pop1 protein_coding protein_coding MGP_C57BL6NJ_T0041200.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34072829 34107092 + MGP_C57BL6NJ_P0041200 Pop1 protein_coding protein_coding MGP_C57BL6NJ_T0041201.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34086082 34088368 + Pop1 protein_coding retained_intron MGP_C57BL6NJ_T0041202.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34090345 34096381 + Pop1 protein_coding processed_transcript MGP_C57BL6NJ_T0041203.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34094152 34105616 + Pop1 protein_coding retained_intron MGP_C57BL6NJ_T0041204.1 MGP_C57BL6NJ_G0022188.1 mouse_genomes_project 15 34102599 34105686 + Pop1 protein_coding retained_intron MGP_C57BL6NJ_T0043024.1 MGP_C57BL6NJ_G0022754.1 mouse_genomes_project 15 105605796 105621266 - MGP_C57BL6NJ_P0043024 Fam186a protein_coding protein_coding MGP_C57BL6NJ_T0043025.1 MGP_C57BL6NJ_G0022754.1 mouse_genomes_project 15 105605801 105657583 - MGP_C57BL6NJ_P0043025 Fam186a protein_coding protein_coding MGP_C57BL6NJ_T0042032.1 MGP_C57BL6NJ_G0022452.1 mouse_genomes_project 15 81703711 81711001 + MGP_C57BL6NJ_P0042032 Mpst protein_coding protein_coding MGP_C57BL6NJ_T0042033.1 MGP_C57BL6NJ_G0022452.1 mouse_genomes_project 15 81703800 81711001 + MGP_C57BL6NJ_P0042033 Mpst protein_coding protein_coding MGP_C57BL6NJ_T0042034.1 MGP_C57BL6NJ_G0022452.1 mouse_genomes_project 15 81704103 81711001 + MGP_C57BL6NJ_P0042034 Mpst protein_coding protein_coding MGP_C57BL6NJ_T0042523.1 MGP_C57BL6NJ_G0022596.1 mouse_genomes_project 15 89097985 89103405 + MGP_C57BL6NJ_P0042523 Upk3a protein_coding protein_coding MGP_C57BL6NJ_T0042807.1 MGP_C57BL6NJ_G0022683.1 mouse_genomes_project 15 102257674 102320245 - MGP_C57BL6NJ_P0042807 Slc38a4 protein_coding protein_coding MGP_C57BL6NJ_T0042808.1 MGP_C57BL6NJ_G0022683.1 mouse_genomes_project 15 102259616 102283464 - MGP_C57BL6NJ_P0042808 Slc38a4 protein_coding protein_coding MGP_C57BL6NJ_T0041308.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41503524 41960097 + MGP_C57BL6NJ_P0041308 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0041309.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41885227 41960097 + MGP_C57BL6NJ_P0041309 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0041310.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41885227 41960102 + MGP_C57BL6NJ_P0041310 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0041311.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41885708 41960097 + MGP_C57BL6NJ_P0041311 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0041312.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41885716 41960100 + MGP_C57BL6NJ_P0041312 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0041313.1 MGP_C57BL6NJ_G0022227.1 mouse_genomes_project 15 41932108 41960097 + MGP_C57BL6NJ_P0041313 Oxr1 protein_coding protein_coding MGP_C57BL6NJ_T0040893.1 MGP_C57BL6NJ_G0022089.1 mouse_genomes_project 15 910842 932284 - MGP_C57BL6NJ_P0040893 Fbxo4 protein_coding protein_coding MGP_C57BL6NJ_T0040894.1 MGP_C57BL6NJ_G0022089.1 mouse_genomes_project 15 922801 923500 - Fbxo4 protein_coding retained_intron MGP_C57BL6NJ_T0013396.1 MGP_C57BL6NJ_G0011441.1 mouse_genomes_project 15 55153778 55155255 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0042672.1 MGP_C57BL6NJ_G0022641.1 mouse_genomes_project 15 93860308 93862113 - MGP_C57BL6NJ_P0042672 Odf3b protein_coding protein_coding MGP_C57BL6NJ_T0042673.1 MGP_C57BL6NJ_G0022641.1 mouse_genomes_project 15 93860364 93862037 - MGP_C57BL6NJ_P0042673 Odf3b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041218.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35676209 35825592 - MGP_C57BL6NJ_P0041218 Rgs22 protein_coding protein_coding MGP_C57BL6NJ_T0041219.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35676218 35825544 - MGP_C57BL6NJ_P0041219 Rgs22 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0041220.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35676300 35708392 - MGP_C57BL6NJ_P0041220 Rgs22 protein_coding protein_coding MGP_C57BL6NJ_T0041221.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35677063 35792044 - MGP_C57BL6NJ_P0041221 Rgs22 protein_coding protein_coding MGP_C57BL6NJ_T0041222.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35716587 35757466 - MGP_C57BL6NJ_P0041222 Rgs22 protein_coding protein_coding MGP_C57BL6NJ_T0041223.1 MGP_C57BL6NJ_G0022195.1 mouse_genomes_project 15 35824422 35825577 - Rgs22 protein_coding retained_intron MGP_C57BL6NJ_T0003756.1 MGP_C57BL6NJ_G0003393.1 mouse_genomes_project 15 68107486 68127155 + Gm27153 antisense antisense MGP_C57BL6NJ_T0041439.1 MGP_C57BL6NJ_G0022274.1 mouse_genomes_project 15 59485525 59532866 - MGP_C57BL6NJ_P0041439 Atad2 protein_coding protein_coding MGP_C57BL6NJ_T0041099.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17105087 17316098 + MGP_C57BL6NJ_P0041099 Cdh10 protein_coding protein_coding MGP_C57BL6NJ_T0041100.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17105098 17193134 + Cdh10 protein_coding retained_intron MGP_C57BL6NJ_T0041101.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17105117 17265087 + Cdh10 protein_coding retained_intron MGP_C57BL6NJ_T0041102.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17106469 17316098 + MGP_C57BL6NJ_P0041102 Cdh10 protein_coding protein_coding MGP_C57BL6NJ_T0041103.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17189613 17315544 + MGP_C57BL6NJ_P0041103 Cdh10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0041104.1 MGP_C57BL6NJ_G0022149.1 mouse_genomes_project 15 17308691 17316098 + Cdh10 protein_coding retained_intron MGP_C57BL6NJ_T0041564.1 MGP_C57BL6NJ_G0022317.1 mouse_genomes_project 15 70219816 70399871 - MGP_C57BL6NJ_P0041564 Zfat protein_coding protein_coding MGP_C57BL6NJ_T0041565.1 MGP_C57BL6NJ_G0022317.1 mouse_genomes_project 15 70220371 70399802 - MGP_C57BL6NJ_P0041565 Zfat protein_coding protein_coding MGP_C57BL6NJ_T0041566.1 MGP_C57BL6NJ_G0022317.1 mouse_genomes_project 15 70220372 70399853 - MGP_C57BL6NJ_P0041566 Zfat protein_coding protein_coding MGP_C57BL6NJ_T0041567.1 MGP_C57BL6NJ_G0022317.1 mouse_genomes_project 15 70315797 70399862 - MGP_C57BL6NJ_P0041567 Zfat protein_coding protein_coding MGP_C57BL6NJ_T0041568.1 MGP_C57BL6NJ_G0022317.1 mouse_genomes_project 15 70359856 70399864 - Zfat protein_coding retained_intron MGP_C57BL6NJ_T0042758.1 MGP_C57BL6NJ_G0022664.1 mouse_genomes_project 15 98145501 98204555 - MGP_C57BL6NJ_P0042758 Yaf2 protein_coding protein_coding MGP_C57BL6NJ_T0042759.1 MGP_C57BL6NJ_G0022664.1 mouse_genomes_project 15 98145504 98204682 - Yaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0043314.1 MGP_C57BL6NJ_G0022858.1 mouse_genomes_project 15 109631196 109677589 + MGP_C57BL6NJ_P0043314 Nckap1l protein_coding protein_coding MGP_C57BL6NJ_T0042113.1 MGP_C57BL6NJ_G0022476.1 mouse_genomes_project 15 82514832 82525522 + MGP_C57BL6NJ_P0042113 Polr2f protein_coding protein_coding MGP_C57BL6NJ_T0041224.1 MGP_C57BL6NJ_G0022196.1 mouse_genomes_project 15 35835298 35850164 - MGP_C57BL6NJ_P0041224 Fbxo43 protein_coding protein_coding MGP_C57BL6NJ_T0041463.1 MGP_C57BL6NJ_G0022290.1 mouse_genomes_project 15 60853590 61026972 + MGP_C57BL6NJ_P0041463 Nsmce2 protein_coding protein_coding MGP_C57BL6NJ_T0041464.1 MGP_C57BL6NJ_G0022290.1 mouse_genomes_project 15 60853590 61090348 + MGP_C57BL6NJ_P0041464 Nsmce2 protein_coding protein_coding MGP_C57BL6NJ_T0101306.1 MGP_C57BL6NJ_G0039352.1 mouse_genomes_project 15 103444437 103444566 + Gm25668 snoRNA snoRNA MGP_C57BL6NJ_T0010269.1 MGP_C57BL6NJ_G0008354.1 mouse_genomes_project 15 81558151 81558213 - Mir7676-1 miRNA miRNA MGP_C57BL6NJ_T0010313.1 MGP_C57BL6NJ_G0008398.1 mouse_genomes_project 15 107889685 107889796 + Gm44356 miRNA miRNA MGP_C57BL6NJ_T0010319.1 MGP_C57BL6NJ_G0008404.1 mouse_genomes_project 15 110079521 110079622 - Gm22852 miRNA miRNA MGP_C57BL6NJ_T0101298.1 MGP_C57BL6NJ_G0039344.1 mouse_genomes_project 15 75864786 75864909 + Gm24787 snoRNA snoRNA MGP_C57BL6NJ_T0042525.1 MGP_C57BL6NJ_G0022598.1 mouse_genomes_project 15 89152983 89224577 - MGP_C57BL6NJ_P0042525 Smc1b protein_coding protein_coding MGP_C57BL6NJ_T0041168.1 MGP_C57BL6NJ_G0022176.1 mouse_genomes_project 15 31663899 31664905 + MGP_C57BL6NJ_P0041168 Tas2r119 protein_coding protein_coding MGP_C57BL6NJ_T0041777.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077464 79107024 - MGP_C57BL6NJ_P0041777 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041778.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077469 79118434 - MGP_C57BL6NJ_P0041778 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041779.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077469 79115590 - MGP_C57BL6NJ_P0041779 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041780.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077469 79142028 - MGP_C57BL6NJ_P0041780 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041781.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077469 79107199 - MGP_C57BL6NJ_P0041781 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041782.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077470 79140147 - MGP_C57BL6NJ_P0041782 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041783.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077471 79107199 - MGP_C57BL6NJ_P0041783 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041784.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077471 79115591 - MGP_C57BL6NJ_P0041784 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041785.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077471 79107971 - MGP_C57BL6NJ_P0041785 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041786.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077471 79105573 - MGP_C57BL6NJ_P0041786 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041787.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79077471 79103074 - MGP_C57BL6NJ_P0041787 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041788.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79081875 79095407 - MGP_C57BL6NJ_P0041788 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041789.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79093974 79115590 - MGP_C57BL6NJ_P0041789 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041790.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79095827 79142695 - MGP_C57BL6NJ_P0041790 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041791.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79095827 79107199 - MGP_C57BL6NJ_P0041791 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041792.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79095827 79117522 - MGP_C57BL6NJ_P0041792 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041793.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79095904 79143220 - MGP_C57BL6NJ_P0041793 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041794.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79101756 79107971 - MGP_C57BL6NJ_P0041794 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041795.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79101756 79118434 - MGP_C57BL6NJ_P0041795 Plec protein_coding protein_coding MGP_C57BL6NJ_T0041796.1 MGP_C57BL6NJ_G0022384.1 mouse_genomes_project 15 79141384 79143224 - Plec protein_coding retained_intron MGP_C57BL6NJ_T0011644.1 MGP_C57BL6NJ_G0009729.1 mouse_genomes_project 15 16144347 16144655 + Gm22895 misc_RNA misc_RNA MGP_C57BL6NJ_T0043148.1 MGP_C57BL6NJ_G0022802.1 mouse_genomes_project 15 107775048 107784084 - MGP_C57BL6NJ_P0043148 Krt73 protein_coding protein_coding MGP_C57BL6NJ_T0010314.1 MGP_C57BL6NJ_G0008399.1 mouse_genomes_project 15 108769718 108769793 - Mir688 miRNA miRNA MGP_C57BL6NJ_T0100001.1 MGP_C57BL6NJ_G0038047.1 mouse_genomes_project 15 100726732 100726836 - Gm24668 snRNA snRNA MGP_C57BL6NJ_T0102875.1 MGP_C57BL6NJ_G0040669.1 mouse_genomes_project 15 78104429 78106550 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0043206.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108467406 108478072 + MGP_C57BL6NJ_P0043206 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043207.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108467591 108502536 + MGP_C57BL6NJ_P0043207 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043208.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108467596 108502536 + MGP_C57BL6NJ_P0043208 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043209.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108467643 108506261 + MGP_C57BL6NJ_P0043209 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043210.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108476591 108478454 + MGP_C57BL6NJ_P0043210 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043211.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108477105 108478072 + MGP_C57BL6NJ_P0043211 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043212.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108477424 108478222 + MGP_C57BL6NJ_P0043212 Sp1 protein_coding protein_coding MGP_C57BL6NJ_T0043213.1 MGP_C57BL6NJ_G0022827.1 mouse_genomes_project 15 108498739 108499660 + Sp1 protein_coding processed_transcript MGP_C57BL6NJ_T0101289.1 MGP_C57BL6NJ_G0039335.1 mouse_genomes_project 15 53513251 53513383 + Gm23267 snoRNA snoRNA MGP_C57BL6NJ_T0040901.1 MGP_C57BL6NJ_G0022092.1 mouse_genomes_project 15 1346267 1502097 + MGP_C57BL6NJ_P0040901 Plcxd3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0040902.1 MGP_C57BL6NJ_G0022092.1 mouse_genomes_project 15 1346280 1558358 + MGP_C57BL6NJ_P0040902 Plcxd3 protein_coding protein_coding MGP_C57BL6NJ_T0043040.1 MGP_C57BL6NJ_G0022760.1 mouse_genomes_project 15 106053362 106099712 + MGP_C57BL6NJ_P0043040 protein_coding protein_coding MGP_C57BL6NJ_T0043039.1 MGP_C57BL6NJ_G0022759.1 mouse_genomes_project 15 106053333 106062080 + MGP_C57BL6NJ_P0043039 Mettl7a1 protein_coding protein_coding MGP_C57BL6NJ_T0042635.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93765369 93791928 - MGP_C57BL6NJ_P0042635 Sbf1 protein_coding protein_coding MGP_C57BL6NJ_T0042636.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93765416 93791872 - MGP_C57BL6NJ_P0042636 Sbf1 protein_coding protein_coding MGP_C57BL6NJ_T0042637.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93765419 93791888 - MGP_C57BL6NJ_P0042637 Sbf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042638.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93765420 93771394 - MGP_C57BL6NJ_P0042638 Sbf1 protein_coding protein_coding MGP_C57BL6NJ_T0042639.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93765689 93766092 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042640.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93766868 93770907 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042641.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93771097 93772748 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042642.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93776349 93777093 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042643.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93777187 93779263 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042644.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93778915 93779967 - MGP_C57BL6NJ_P0042644 Sbf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0042645.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93779725 93781728 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042646.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93781520 93783250 - Sbf1 protein_coding retained_intron MGP_C57BL6NJ_T0042647.1 MGP_C57BL6NJ_G0022634.1 mouse_genomes_project 15 93782643 93784433 - MGP_C57BL6NJ_P0042647 Sbf1 protein_coding protein_coding MGP_C57BL6NJ_T0041655.1 MGP_C57BL6NJ_G0022349.1 mouse_genomes_project 15 77464030 77469339 - MGP_C57BL6NJ_P0041655 Cyp11b2 protein_coding protein_coding MGP_C57BL6NJ_T0099963.1 MGP_C57BL6NJ_G0038009.1 mouse_genomes_project 15 34109967 34110077 + Gm22208 snRNA snRNA MGP_C57BL6NJ_T0042812.1 MGP_C57BL6NJ_G0022687.1 mouse_genomes_project 15 103048785 103069206 - MGP_C57BL6NJ_P0042812 Endou protein_coding protein_coding MGP_C57BL6NJ_T0042813.1 MGP_C57BL6NJ_G0022687.1 mouse_genomes_project 15 103048785 103058951 - MGP_C57BL6NJ_P0042813 Endou protein_coding protein_coding MGP_C57BL6NJ_T0017943.1 MGP_C57BL6NJ_G0015701.1 mouse_genomes_project 15 96571299 96672296 + Muc19 processed_transcript processed_transcript MGP_C57BL6NJ_T0017944.1 MGP_C57BL6NJ_G0015701.1 mouse_genomes_project 15 96605232 96632128 + Muc19 processed_transcript processed_transcript MGP_C57BL6NJ_T0017945.1 MGP_C57BL6NJ_G0015701.1 mouse_genomes_project 15 96615048 96644029 + Muc19 processed_transcript processed_transcript MGP_C57BL6NJ_T0043222.1 MGP_C57BL6NJ_G0022830.1 mouse_genomes_project 15 108549101 108587107 + MGP_C57BL6NJ_P0043222 Pcbp2 protein_coding protein_coding MGP_C57BL6NJ_T0043223.1 MGP_C57BL6NJ_G0022830.1 mouse_genomes_project 15 108549101 108587107 + MGP_C57BL6NJ_P0043223 Pcbp2 protein_coding protein_coding MGP_C57BL6NJ_T0043224.1 MGP_C57BL6NJ_G0022830.1 mouse_genomes_project 15 108549101 108587107 + MGP_C57BL6NJ_P0043224 Pcbp2 protein_coding protein_coding MGP_C57BL6NJ_T0006954.1 MGP_C57BL6NJ_G0005735.1 mouse_genomes_project 15 85499536 85501530 - Gm17597 lincRNA lincRNA MGP_C57BL6NJ_T0042989.1 MGP_C57BL6NJ_G0022743.1 mouse_genomes_project 15 105221914 105227426 + MGP_C57BL6NJ_P0042989 Aqp2 protein_coding protein_coding MGP_C57BL6NJ_T0003814.1 MGP_C57BL6NJ_G0003442.1 mouse_genomes_project 16 30030378 30032279 - Gm15743 antisense antisense MGP_C57BL6NJ_T0003815.1 MGP_C57BL6NJ_G0003442.1 mouse_genomes_project 16 30030378 30030794 - Gm15743 antisense antisense MGP_C57BL6NJ_T0045410.1 MGP_C57BL6NJ_G0023399.1 mouse_genomes_project 16 91516486 91679681 - MGP_C57BL6NJ_P0045410 Grik1 protein_coding protein_coding MGP_C57BL6NJ_T0045411.1 MGP_C57BL6NJ_G0023399.1 mouse_genomes_project 16 91516486 91704030 - MGP_C57BL6NJ_P0045411 Grik1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045412.1 MGP_C57BL6NJ_G0023399.1 mouse_genomes_project 16 91516486 91679681 - MGP_C57BL6NJ_P0045412 Grik1 protein_coding protein_coding MGP_C57BL6NJ_T0045413.1 MGP_C57BL6NJ_G0023399.1 mouse_genomes_project 16 91516486 91680297 - MGP_C57BL6NJ_P0045413 Grik1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045414.1 MGP_C57BL6NJ_G0023399.1 mouse_genomes_project 16 91533923 91679681 - MGP_C57BL6NJ_P0045414 Grik1 protein_coding protein_coding MGP_C57BL6NJ_T0045350.1 MGP_C57BL6NJ_G0023384.1 mouse_genomes_project 16 88058671 88082308 - MGP_C57BL6NJ_P0045350 Mrpl39 protein_coding protein_coding MGP_C57BL6NJ_T0045351.1 MGP_C57BL6NJ_G0023384.1 mouse_genomes_project 16 88080733 88081796 - Mrpl39 protein_coding processed_transcript MGP_C57BL6NJ_T0102189.1 MGP_C57BL6NJ_G0040204.1 mouse_genomes_project 16 49549939 49550310 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102190.1 MGP_C57BL6NJ_G0040204.1 mouse_genomes_project 16 49550064 49551073 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0044101.1 MGP_C57BL6NJ_G0023043.1 mouse_genomes_project 16 17135625 17136547 - MGP_C57BL6NJ_P0044101 protein_coding protein_coding MGP_C57BL6NJ_T0101332.1 MGP_C57BL6NJ_G0039378.1 mouse_genomes_project 16 37515072 37515205 + Gm25617 snoRNA snoRNA MGP_C57BL6NJ_T0013511.1 MGP_C57BL6NJ_G0011556.1 mouse_genomes_project 16 91137659 91138049 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010347.1 MGP_C57BL6NJ_G0008432.1 mouse_genomes_project 16 26982601 26982710 - Mir690 miRNA miRNA MGP_C57BL6NJ_T0045234.1 MGP_C57BL6NJ_G0023339.1 mouse_genomes_project 16 60073152 60074192 - MGP_C57BL6NJ_P0045234 protein_coding protein_coding MGP_C57BL6NJ_T0102882.1 MGP_C57BL6NJ_G0040676.1 mouse_genomes_project 16 98475 99409 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0043391.1 MGP_C57BL6NJ_G0022878.1 mouse_genomes_project 16 816966 847832 - MGP_C57BL6NJ_P0043391 Adcy9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043392.1 MGP_C57BL6NJ_G0022878.1 mouse_genomes_project 16 819615 956604 - MGP_C57BL6NJ_P0043392 Adcy9 protein_coding protein_coding MGP_C57BL6NJ_T0043393.1 MGP_C57BL6NJ_G0022878.1 mouse_genomes_project 16 819615 955914 - MGP_C57BL6NJ_P0043393 Adcy9 protein_coding protein_coding MGP_C57BL6NJ_T0043394.1 MGP_C57BL6NJ_G0022878.1 mouse_genomes_project 16 819631 955693 - MGP_C57BL6NJ_P0043394 Adcy9 protein_coding protein_coding MGP_C57BL6NJ_T0044491.1 MGP_C57BL6NJ_G0023143.1 mouse_genomes_project 16 30685677 30755021 - MGP_C57BL6NJ_P0044491 Pak2 protein_coding protein_coding MGP_C57BL6NJ_T0045197.1 MGP_C57BL6NJ_G0023319.1 mouse_genomes_project 16 59430437 59434010 - MGP_C57BL6NJ_P0045197 E330017A01Rik protein_coding protein_coding MGP_C57BL6NJ_T0044664.1 MGP_C57BL6NJ_G0023182.1 mouse_genomes_project 16 34166245 34337339 + MGP_C57BL6NJ_P0044664 Adcy5 protein_coding protein_coding MGP_C57BL6NJ_T0010334.1 MGP_C57BL6NJ_G0008419.1 mouse_genomes_project 16 15636600 15636682 - Mir6366 miRNA miRNA MGP_C57BL6NJ_T0044964.1 MGP_C57BL6NJ_G0023255.1 mouse_genomes_project 16 44491691 44502684 - MGP_C57BL6NJ_P0044964 Gtpbp8 protein_coding protein_coding MGP_C57BL6NJ_T0044965.1 MGP_C57BL6NJ_G0023255.1 mouse_genomes_project 16 44494065 44502680 - MGP_C57BL6NJ_P0044965 Gtpbp8 protein_coding protein_coding MGP_C57BL6NJ_T0044966.1 MGP_C57BL6NJ_G0023255.1 mouse_genomes_project 16 44494188 44502604 - MGP_C57BL6NJ_P0044966 Gtpbp8 protein_coding protein_coding MGP_C57BL6NJ_T0044967.1 MGP_C57BL6NJ_G0023255.1 mouse_genomes_project 16 44500128 44502630 - MGP_C57BL6NJ_P0044967 Gtpbp8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013510.1 MGP_C57BL6NJ_G0011555.1 mouse_genomes_project 16 86623685 86624168 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044939.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44083500 44125576 + MGP_C57BL6NJ_P0044939 Spice1 protein_coding protein_coding MGP_C57BL6NJ_T0044940.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44083793 44106200 + Spice1 protein_coding processed_transcript MGP_C57BL6NJ_T0044941.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44084070 44123918 + MGP_C57BL6NJ_P0044941 Spice1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044942.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44084425 44103180 + Spice1 protein_coding processed_transcript MGP_C57BL6NJ_T0044943.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44103082 44105838 + Spice1 protein_coding retained_intron MGP_C57BL6NJ_T0044944.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44103152 44106205 + Spice1 protein_coding retained_intron MGP_C57BL6NJ_T0044945.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44105455 44122785 + Spice1 protein_coding retained_intron MGP_C57BL6NJ_T0044946.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44105897 44109071 + Spice1 protein_coding processed_transcript MGP_C57BL6NJ_T0044947.1 MGP_C57BL6NJ_G0023251.1 mouse_genomes_project 16 44122462 44124222 + Spice1 protein_coding retained_intron MGP_C57BL6NJ_T0045443.1 MGP_C57BL6NJ_G0023426.1 mouse_genomes_project 16 92774963 92775563 - MGP_C57BL6NJ_P0045443 Krtap6-5 protein_coding protein_coding MGP_C57BL6NJ_T0045159.1 MGP_C57BL6NJ_G0023307.1 mouse_genomes_project 16 57524544 57601461 - MGP_C57BL6NJ_P0045159 Tmem45a protein_coding protein_coding MGP_C57BL6NJ_T0045160.1 MGP_C57BL6NJ_G0023307.1 mouse_genomes_project 16 57525873 57531097 - Tmem45a protein_coding processed_transcript MGP_C57BL6NJ_T0045161.1 MGP_C57BL6NJ_G0023307.1 mouse_genomes_project 16 57546373 57552592 - MGP_C57BL6NJ_P0045161 Tmem45a protein_coding protein_coding MGP_C57BL6NJ_T0011669.1 MGP_C57BL6NJ_G0009754.1 mouse_genomes_project 16 21539412 21539726 - Gm23430 misc_RNA misc_RNA MGP_C57BL6NJ_T0101340.1 MGP_C57BL6NJ_G0039386.1 mouse_genomes_project 16 54861292 54861424 + Gm25853 snoRNA snoRNA MGP_C57BL6NJ_T0045045.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46225718 46344036 - MGP_C57BL6NJ_P0045045 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045046.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46232870 46253275 - MGP_C57BL6NJ_P0045046 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045047.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46232917 46253331 - MGP_C57BL6NJ_P0045047 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045048.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46233001 46292166 - MGP_C57BL6NJ_P0045048 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045049.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46233455 46281782 - MGP_C57BL6NJ_P0045049 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045050.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46279705 46343921 - MGP_C57BL6NJ_P0045050 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045051.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46280117 46282360 - Nectin3 protein_coding retained_intron MGP_C57BL6NJ_T0045052.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46290824 46344036 - MGP_C57BL6NJ_P0045052 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045053.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46299197 46343841 - MGP_C57BL6NJ_P0045053 Nectin3 protein_coding protein_coding MGP_C57BL6NJ_T0045054.1 MGP_C57BL6NJ_G0023275.1 mouse_genomes_project 16 46303387 46345594 - Nectin3 protein_coding processed_transcript MGP_C57BL6NJ_T0044749.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36089099 36093975 + Iqcb1 protein_coding processed_transcript MGP_C57BL6NJ_T0044750.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36089121 36137100 + MGP_C57BL6NJ_P0044750 Iqcb1 protein_coding protein_coding MGP_C57BL6NJ_T0044751.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36089122 36137092 + MGP_C57BL6NJ_P0044751 Iqcb1 protein_coding protein_coding MGP_C57BL6NJ_T0044752.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36110344 36114740 + Iqcb1 protein_coding retained_intron MGP_C57BL6NJ_T0044753.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36110749 36114747 + Iqcb1 protein_coding processed_transcript MGP_C57BL6NJ_T0044754.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36114619 36122968 + Iqcb1 protein_coding processed_transcript MGP_C57BL6NJ_T0044755.1 MGP_C57BL6NJ_G0023207.1 mouse_genomes_project 16 36114959 36119833 + Iqcb1 protein_coding processed_transcript MGP_C57BL6NJ_T0003810.1 MGP_C57BL6NJ_G0003438.1 mouse_genomes_project 16 16118607 16140383 + 4930588K23Rik antisense antisense MGP_C57BL6NJ_T0045771.1 MGP_C57BL6NJ_G0023497.1 mouse_genomes_project 16 100567455 100577962 - MGP_C57BL6NJ_P0045771 Hmgn1 protein_coding protein_coding MGP_C57BL6NJ_T0045772.1 MGP_C57BL6NJ_G0023497.1 mouse_genomes_project 16 100571315 100575572 - Hmgn1 protein_coding retained_intron MGP_C57BL6NJ_T0045773.1 MGP_C57BL6NJ_G0023497.1 mouse_genomes_project 16 100571455 100577837 - MGP_C57BL6NJ_P0045773 Hmgn1 protein_coding protein_coding MGP_C57BL6NJ_T0045774.1 MGP_C57BL6NJ_G0023497.1 mouse_genomes_project 16 100576837 100577699 - Hmgn1 protein_coding retained_intron MGP_C57BL6NJ_T0044823.1 MGP_C57BL6NJ_G0023225.1 mouse_genomes_project 16 37711737 37727029 + MGP_C57BL6NJ_P0044823 Cox17 protein_coding protein_coding MGP_C57BL6NJ_T0010348.1 MGP_C57BL6NJ_G0008433.1 mouse_genomes_project 16 29853628 29853723 + Gm27415 miRNA miRNA MGP_C57BL6NJ_T0044665.1 MGP_C57BL6NJ_G0023183.1 mouse_genomes_project 16 34342732 34399598 - MGP_C57BL6NJ_P0044665 Sec22a protein_coding protein_coding MGP_C57BL6NJ_T0044666.1 MGP_C57BL6NJ_G0023183.1 mouse_genomes_project 16 34345671 34383419 - Sec22a protein_coding processed_transcript MGP_C57BL6NJ_T0044667.1 MGP_C57BL6NJ_G0023183.1 mouse_genomes_project 16 34384589 34399495 - Sec22a protein_coding retained_intron MGP_C57BL6NJ_T0044668.1 MGP_C57BL6NJ_G0023183.1 mouse_genomes_project 16 34396352 34399532 - Sec22a protein_coding retained_intron MGP_C57BL6NJ_T0044669.1 MGP_C57BL6NJ_G0023183.1 mouse_genomes_project 16 34396724 34399527 - Sec22a protein_coding processed_transcript MGP_C57BL6NJ_T0003830.1 MGP_C57BL6NJ_G0003453.1 mouse_genomes_project 16 37950126 37955202 - Gm17103 antisense antisense MGP_C57BL6NJ_T0043444.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1433134 1449909 + MGP_C57BL6NJ_P0043444 4930562C15Rik protein_coding non_stop_decay MGP_C57BL6NJ_T0043445.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1433134 1465015 + MGP_C57BL6NJ_P0043445 4930562C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0043446.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1438818 1449915 + MGP_C57BL6NJ_P0043446 4930562C15Rik protein_coding non_stop_decay MGP_C57BL6NJ_T0043447.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1448520 1458386 + MGP_C57BL6NJ_P0043447 4930562C15Rik protein_coding protein_coding MGP_C57BL6NJ_T0043448.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1458896 1464673 + MGP_C57BL6NJ_P0043448 4930562C15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043449.1 MGP_C57BL6NJ_G0022889.1 mouse_genomes_project 16 1461646 1462502 + 4930562C15Rik protein_coding retained_intron MGP_C57BL6NJ_T0001105.1 MGP_C57BL6NJ_G0001012.1 mouse_genomes_project 16 80278157 80279065 + TEC TEC MGP_C57BL6NJ_T0043990.1 MGP_C57BL6NJ_G0023019.1 mouse_genomes_project 16 15694882 15710963 - MGP_C57BL6NJ_P0043990 Zdhhc8 protein_coding protein_coding MGP_C57BL6NJ_T0044879.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42523314 43141275 + Zbtb20 protein_coding retained_intron MGP_C57BL6NJ_T0044880.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42564225 42736396 + Zbtb20 protein_coding processed_transcript MGP_C57BL6NJ_T0044881.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42564375 43253788 + Zbtb20 protein_coding processed_transcript MGP_C57BL6NJ_T0044882.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42564478 43261746 + MGP_C57BL6NJ_P0044882 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044883.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42564485 43141174 + Zbtb20 protein_coding retained_intron MGP_C57BL6NJ_T0044884.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42910583 43294637 + MGP_C57BL6NJ_P0044884 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044885.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 42910742 42978553 + Zbtb20 protein_coding retained_intron MGP_C57BL6NJ_T0044886.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43040077 43253768 + Zbtb20 protein_coding processed_transcript MGP_C57BL6NJ_T0044887.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43041218 43262772 + Zbtb20 protein_coding retained_intron MGP_C57BL6NJ_T0044888.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43041611 43294584 + MGP_C57BL6NJ_P0044888 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044889.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43041942 43294591 + MGP_C57BL6NJ_P0044889 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044890.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43185985 43261214 + MGP_C57BL6NJ_P0044890 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044891.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43185993 43255782 + MGP_C57BL6NJ_P0044891 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044892.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43186013 43294826 + MGP_C57BL6NJ_P0044892 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044893.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43186068 43261195 + Zbtb20 protein_coding processed_transcript MGP_C57BL6NJ_T0044894.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43190494 43253788 + Zbtb20 protein_coding processed_transcript MGP_C57BL6NJ_T0044895.1 MGP_C57BL6NJ_G0023240.1 mouse_genomes_project 16 43253573 43303808 + MGP_C57BL6NJ_P0044895 Zbtb20 protein_coding protein_coding MGP_C57BL6NJ_T0044293.1 MGP_C57BL6NJ_G0023088.1 mouse_genomes_project 16 20776030 20824826 - MGP_C57BL6NJ_P0044293 Tbccd1 protein_coding protein_coding MGP_C57BL6NJ_T0043699.1 MGP_C57BL6NJ_G0022956.1 mouse_genomes_project 16 11297357 11351193 - MGP_C57BL6NJ_P0043699 Marf1 protein_coding protein_coding MGP_C57BL6NJ_T0099351.1 MGP_C57BL6NJ_G0037410.1 mouse_genomes_project 16 2651407 2674327 + 1700123O21Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0101360.1 MGP_C57BL6NJ_G0039406.1 mouse_genomes_project 16 91374764 91374852 - Gm23994 snoRNA snoRNA MGP_C57BL6NJ_T0045619.1 MGP_C57BL6NJ_G0023468.1 mouse_genomes_project 16 96104625 96159649 + MGP_C57BL6NJ_P0045619 Mrps6 protein_coding protein_coding MGP_C57BL6NJ_T0045622.1 MGP_C57BL6NJ_G0023468.1 mouse_genomes_project 16 96153682 96159649 + Mrps6 protein_coding processed_transcript MGP_C57BL6NJ_T0010362.1 MGP_C57BL6NJ_G0008447.1 mouse_genomes_project 16 56077425 56077492 + Mir5118 miRNA miRNA MGP_C57BL6NJ_T0045250.1 MGP_C57BL6NJ_G0023349.1 mouse_genomes_project 16 60413013 60449603 - Crybg3 protein_coding retained_intron MGP_C57BL6NJ_T0045251.1 MGP_C57BL6NJ_G0023349.1 mouse_genomes_project 16 60414326 60481606 - MGP_C57BL6NJ_P0045251 Crybg3 protein_coding protein_coding MGP_C57BL6NJ_T0045252.1 MGP_C57BL6NJ_G0023349.1 mouse_genomes_project 16 60450493 60464361 - Crybg3 protein_coding processed_transcript MGP_C57BL6NJ_T0045253.1 MGP_C57BL6NJ_G0023349.1 mouse_genomes_project 16 60468551 60479824 - MGP_C57BL6NJ_P0045253 Crybg3 protein_coding protein_coding MGP_C57BL6NJ_T0013508.1 MGP_C57BL6NJ_G0011553.1 mouse_genomes_project 16 81689336 81689688 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045340.1 MGP_C57BL6NJ_G0023380.1 mouse_genomes_project 16 81245069 81274307 - MGP_C57BL6NJ_P0045340 D16Ertd472e protein_coding protein_coding MGP_C57BL6NJ_T0045341.1 MGP_C57BL6NJ_G0023380.1 mouse_genomes_project 16 81245746 81274307 - MGP_C57BL6NJ_P0045341 D16Ertd472e protein_coding protein_coding MGP_C57BL6NJ_T0045342.1 MGP_C57BL6NJ_G0023380.1 mouse_genomes_project 16 81246018 81274307 - MGP_C57BL6NJ_P0045342 D16Ertd472e protein_coding protein_coding MGP_C57BL6NJ_T0003851.1 MGP_C57BL6NJ_G0003470.1 mouse_genomes_project 16 102553859 102556678 - C030010L15Rik antisense antisense MGP_C57BL6NJ_T0003852.1 MGP_C57BL6NJ_G0003470.1 mouse_genomes_project 16 102553921 102556227 - C030010L15Rik antisense antisense MGP_C57BL6NJ_T0044265.1 MGP_C57BL6NJ_G0023077.1 mouse_genomes_project 16 19484576 19537208 - MGP_C57BL6NJ_P0044265 2510009E07Rik protein_coding protein_coding MGP_C57BL6NJ_T0007025.1 MGP_C57BL6NJ_G0005792.1 mouse_genomes_project 16 50923519 50936320 - Dubr lincRNA lincRNA MGP_C57BL6NJ_T0007026.1 MGP_C57BL6NJ_G0005792.1 mouse_genomes_project 16 50923524 50936230 - Dubr lincRNA lincRNA MGP_C57BL6NJ_T0007027.1 MGP_C57BL6NJ_G0005792.1 mouse_genomes_project 16 50930289 50936284 - Dubr lincRNA lincRNA MGP_C57BL6NJ_T0007028.1 MGP_C57BL6NJ_G0005792.1 mouse_genomes_project 16 50930974 50936235 - Dubr lincRNA lincRNA MGP_C57BL6NJ_T0013455.1 MGP_C57BL6NJ_G0011500.1 mouse_genomes_project 16 16615724 16616147 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012071.1 MGP_C57BL6NJ_G0010151.1 mouse_genomes_project 16 59945599 59949753 - MGP_C57BL6NJ_P0012071 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0010357.1 MGP_C57BL6NJ_G0008442.1 mouse_genomes_project 16 43498715 43498832 + Gm25996 miRNA miRNA MGP_C57BL6NJ_T0045418.1 MGP_C57BL6NJ_G0023403.1 mouse_genomes_project 16 92311789 92312670 - MGP_C57BL6NJ_P0045418 2310079G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0045806.1 MGP_C57BL6NJ_G0023504.1 mouse_genomes_project 16 100950878 101010443 + MGP_C57BL6NJ_P0045806 Pcp4 protein_coding protein_coding MGP_C57BL6NJ_T0000191.1 MGP_C57BL6NJ_G0000142.1 mouse_genomes_project 16 16855445 16856243 - MGP_C57BL6NJ_P0000191 Iglv2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0000193.1 MGP_C57BL6NJ_G0000142.1 mouse_genomes_project 16 16855445 16856258 - MGP_C57BL6NJ_P0000193 Iglv2 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0045510.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94978608 95009130 - MGP_C57BL6NJ_P0045510 Paxbp1 protein_coding protein_coding MGP_C57BL6NJ_T0045511.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94979487 95008751 - MGP_C57BL6NJ_P0045511 Paxbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045512.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94981420 94983803 - Paxbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0045513.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94989382 94995403 - Paxbp1 protein_coding retained_intron MGP_C57BL6NJ_T0045514.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94990127 94995101 - MGP_C57BL6NJ_P0045514 Paxbp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045515.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94990246 94992210 - Paxbp1 protein_coding retained_intron MGP_C57BL6NJ_T0045516.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94995035 94999479 - Paxbp1 protein_coding retained_intron MGP_C57BL6NJ_T0045517.1 MGP_C57BL6NJ_G0023450.1 mouse_genomes_project 16 94996150 95008941 - Paxbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0001088.1 MGP_C57BL6NJ_G0000996.1 mouse_genomes_project 16 39814804 39815243 + TEC TEC MGP_C57BL6NJ_T0044771.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36275609 36361858 + MGP_C57BL6NJ_P0044771 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044772.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36275609 36362263 + MGP_C57BL6NJ_P0044772 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044773.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36275609 36361858 + MGP_C57BL6NJ_P0044773 protein_coding protein_coding MGP_C57BL6NJ_T0044774.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36275609 36362283 + MGP_C57BL6NJ_P0044774 protein_coding protein_coding MGP_C57BL6NJ_T0044775.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36275638 36282313 + protein_coding retained_intron MGP_C57BL6NJ_T0044776.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36305534 36327615 + protein_coding retained_intron MGP_C57BL6NJ_T0044777.1 MGP_C57BL6NJ_G0023211.1 mouse_genomes_project 16 36352780 36362283 + protein_coding retained_intron MGP_C57BL6NJ_T0044515.1 MGP_C57BL6NJ_G0023147.1 mouse_genomes_project 16 30873848 30874612 + MGP_C57BL6NJ_P0044515 Bex6 protein_coding protein_coding MGP_C57BL6NJ_T0010320.1 MGP_C57BL6NJ_G0008405.1 mouse_genomes_project 16 408612 408700 + Gm23493 miRNA miRNA MGP_C57BL6NJ_T0007016.1 MGP_C57BL6NJ_G0005784.1 mouse_genomes_project 16 34884118 34887118 - Gm26838 lincRNA lincRNA MGP_C57BL6NJ_T0045449.1 MGP_C57BL6NJ_G0023430.1 mouse_genomes_project 16 92882652 92883117 + MGP_C57BL6NJ_P0045449 Gm10061 protein_coding protein_coding MGP_C57BL6NJ_T0013459.1 MGP_C57BL6NJ_G0011504.1 mouse_genomes_project 16 18360492 18360984 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045830.1 MGP_C57BL6NJ_G0023513.1 mouse_genomes_project 16 102509476 102524665 - MGP_C57BL6NJ_P0045830 Zbtb21 protein_coding protein_coding MGP_C57BL6NJ_T0045831.1 MGP_C57BL6NJ_G0023513.1 mouse_genomes_project 16 102509476 102524665 - MGP_C57BL6NJ_P0045831 Zbtb21 protein_coding protein_coding MGP_C57BL6NJ_T0045832.1 MGP_C57BL6NJ_G0023513.1 mouse_genomes_project 16 102509476 102524665 - MGP_C57BL6NJ_P0045832 Zbtb21 protein_coding protein_coding MGP_C57BL6NJ_T0098833.1 MGP_C57BL6NJ_G0036897.1 mouse_genomes_project 16 59945599 59947001 - pseudogene pseudogene MGP_C57BL6NJ_T0045807.1 MGP_C57BL6NJ_G0023505.1 mouse_genomes_project 16 101078331 101699585 - MGP_C57BL6NJ_P0045807 Dscam protein_coding protein_coding MGP_C57BL6NJ_T0007033.1 MGP_C57BL6NJ_G0005796.1 mouse_genomes_project 16 60377953 60391530 - lincRNA lincRNA MGP_C57BL6NJ_T0007034.1 MGP_C57BL6NJ_G0005796.1 mouse_genomes_project 16 60381769 60391564 - lincRNA lincRNA MGP_C57BL6NJ_T0101355.1 MGP_C57BL6NJ_G0039401.1 mouse_genomes_project 16 88086210 88086337 + Gm26153 snoRNA snoRNA MGP_C57BL6NJ_T0045518.1 MGP_C57BL6NJ_G0023451.1 mouse_genomes_project 16 95018521 95033732 - MGP_C57BL6NJ_P0045518 4932438H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0045519.1 MGP_C57BL6NJ_G0023451.1 mouse_genomes_project 16 95018521 95033732 - MGP_C57BL6NJ_P0045519 4932438H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0045520.1 MGP_C57BL6NJ_G0023451.1 mouse_genomes_project 16 95020424 95060326 - MGP_C57BL6NJ_P0045520 4932438H23Rik protein_coding protein_coding MGP_C57BL6NJ_T0017968.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79826937 79967892 + processed_transcript lincRNA MGP_C57BL6NJ_T0017969.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79826937 80216743 + processed_transcript lincRNA MGP_C57BL6NJ_T0017970.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79826939 80215274 + processed_transcript lincRNA MGP_C57BL6NJ_T0017971.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927159 80304224 + processed_transcript lincRNA MGP_C57BL6NJ_T0017972.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927167 79964715 + processed_transcript lincRNA MGP_C57BL6NJ_T0017973.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927184 80213244 + processed_transcript lincRNA MGP_C57BL6NJ_T0017974.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927238 80216764 + processed_transcript lincRNA MGP_C57BL6NJ_T0017975.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927307 80172090 + processed_transcript lincRNA MGP_C57BL6NJ_T0017976.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 79927483 80315579 + processed_transcript lincRNA MGP_C57BL6NJ_T0017977.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80065893 80068362 + processed_transcript TEC MGP_C57BL6NJ_T0017978.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80110346 80216851 + processed_transcript lincRNA MGP_C57BL6NJ_T0017979.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80110506 80315583 + processed_transcript lincRNA MGP_C57BL6NJ_T0017980.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80212147 80214394 + processed_transcript TEC MGP_C57BL6NJ_T0017981.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80212685 80213287 + processed_transcript lincRNA MGP_C57BL6NJ_T0017982.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80293981 80315577 + processed_transcript lincRNA MGP_C57BL6NJ_T0017983.1 MGP_C57BL6NJ_G0015716.1 mouse_genomes_project 16 80303935 80315577 + processed_transcript lincRNA MGP_C57BL6NJ_T0044451.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29893676 29912339 - MGP_C57BL6NJ_P0044451 Apod protein_coding protein_coding MGP_C57BL6NJ_T0044452.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29894606 29912335 - MGP_C57BL6NJ_P0044452 Apod protein_coding protein_coding MGP_C57BL6NJ_T0044453.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29894640 29912125 - Apod protein_coding retained_intron MGP_C57BL6NJ_T0044454.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29894904 29900976 - Apod protein_coding retained_intron MGP_C57BL6NJ_T0044455.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29894997 29901209 - Apod protein_coding retained_intron MGP_C57BL6NJ_T0044456.1 MGP_C57BL6NJ_G0023135.1 mouse_genomes_project 16 29901035 29908879 - Apod protein_coding retained_intron MGP_C57BL6NJ_T0045459.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93629379 93756510 - MGP_C57BL6NJ_P0045459 Tiam1 protein_coding protein_coding MGP_C57BL6NJ_T0045460.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93629392 93640319 - MGP_C57BL6NJ_P0045460 Tiam1 protein_coding protein_coding MGP_C57BL6NJ_T0045461.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93630007 93660630 - MGP_C57BL6NJ_P0045461 Tiam1 protein_coding protein_coding MGP_C57BL6NJ_T0045462.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93630135 93681259 - Tiam1 protein_coding retained_intron MGP_C57BL6NJ_T0045463.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93630699 93637560 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0045464.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93633962 93642268 - MGP_C57BL6NJ_P0045464 Tiam1 protein_coding protein_coding MGP_C57BL6NJ_T0045465.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93742771 93822323 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0045466.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93742812 93809650 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0045467.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93742882 93765802 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0045468.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93755041 93803261 - Tiam1 protein_coding retained_intron MGP_C57BL6NJ_T0045469.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93755368 93821523 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0045470.1 MGP_C57BL6NJ_G0023440.1 mouse_genomes_project 16 93803118 93827704 - Tiam1 protein_coding processed_transcript MGP_C57BL6NJ_T0010369.1 MGP_C57BL6NJ_G0008454.1 mouse_genomes_project 16 76310674 76310772 + Gm24272 miRNA miRNA MGP_C57BL6NJ_T0043563.1 MGP_C57BL6NJ_G0022923.1 mouse_genomes_project 16 7434831 7485072 + MGP_C57BL6NJ_P0043563 Ciita protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043564.1 MGP_C57BL6NJ_G0022923.1 mouse_genomes_project 16 7441850 7487394 + MGP_C57BL6NJ_P0043564 Ciita protein_coding protein_coding MGP_C57BL6NJ_T0017959.1 MGP_C57BL6NJ_G0015710.1 mouse_genomes_project 16 31792783 31972414 - Gm17106 processed_transcript processed_transcript MGP_C57BL6NJ_T0101358.1 MGP_C57BL6NJ_G0039404.1 mouse_genomes_project 16 91002094 91002230 - Gm25896 snoRNA snoRNA MGP_C57BL6NJ_T0098835.1 MGP_C57BL6NJ_G0036899.1 mouse_genomes_project 16 66366481 66368942 - pseudogene pseudogene MGP_C57BL6NJ_T0043582.1 MGP_C57BL6NJ_G0022929.1 mouse_genomes_project 16 7766171 7766897 - MGP_C57BL6NJ_P0043582 Prm2 protein_coding protein_coding MGP_C57BL6NJ_T0043583.1 MGP_C57BL6NJ_G0022929.1 mouse_genomes_project 16 7766328 7770926 - MGP_C57BL6NJ_P0043583 Prm2 protein_coding protein_coding MGP_C57BL6NJ_T0043843.1 MGP_C57BL6NJ_G0022989.1 mouse_genomes_project 16 14565083 14570870 + MGP_C57BL6NJ_P0043843 Rimbp3 protein_coding protein_coding MGP_C57BL6NJ_T0045162.1 MGP_C57BL6NJ_G0023308.1 mouse_genomes_project 16 57739593 57781501 - MGP_C57BL6NJ_P0045162 Tmem45a2 protein_coding protein_coding MGP_C57BL6NJ_T0045809.1 MGP_C57BL6NJ_G0023507.1 mouse_genomes_project 16 101977528 101993053 - MGP_C57BL6NJ_P0045809 Mx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045810.1 MGP_C57BL6NJ_G0023507.1 mouse_genomes_project 16 101977530 101993051 - MGP_C57BL6NJ_P0045810 Mx1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045811.1 MGP_C57BL6NJ_G0023507.1 mouse_genomes_project 16 101977530 101993052 - MGP_C57BL6NJ_P0045811 Mx1 protein_coding protein_coding MGP_C57BL6NJ_T0045812.1 MGP_C57BL6NJ_G0023507.1 mouse_genomes_project 16 101977530 101993052 - MGP_C57BL6NJ_P0045812 Mx1 protein_coding protein_coding MGP_C57BL6NJ_T0045813.1 MGP_C57BL6NJ_G0023507.1 mouse_genomes_project 16 101987445 101993051 - MGP_C57BL6NJ_P0045813 Mx1 protein_coding protein_coding MGP_C57BL6NJ_T0013480.1 MGP_C57BL6NJ_G0011525.1 mouse_genomes_project 16 38144157 38145738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013513.1 MGP_C57BL6NJ_G0011558.1 mouse_genomes_project 16 95522572 95524517 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010330.1 MGP_C57BL6NJ_G0008415.1 mouse_genomes_project 16 11319193 11319259 - Gm27671 miRNA miRNA MGP_C57BL6NJ_T0044896.1 MGP_C57BL6NJ_G0023241.1 mouse_genomes_project 16 43333911 43350813 - MGP_C57BL6NJ_P0044896 Tigit protein_coding protein_coding MGP_C57BL6NJ_T0044517.1 MGP_C57BL6NJ_G0023149.1 mouse_genomes_project 16 30937004 30949002 + Wdr53 protein_coding processed_transcript MGP_C57BL6NJ_T0044518.1 MGP_C57BL6NJ_G0023149.1 mouse_genomes_project 16 30937004 30949323 + MGP_C57BL6NJ_P0044518 Wdr53 protein_coding protein_coding MGP_C57BL6NJ_T0044519.1 MGP_C57BL6NJ_G0023149.1 mouse_genomes_project 16 30937030 30949332 + MGP_C57BL6NJ_P0044519 Wdr53 protein_coding protein_coding MGP_C57BL6NJ_T0044520.1 MGP_C57BL6NJ_G0023149.1 mouse_genomes_project 16 30937178 30944209 + Wdr53 protein_coding retained_intron MGP_C57BL6NJ_T0044867.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 39458767 40510203 + MGP_C57BL6NJ_P0044867 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044868.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 39458777 41786042 + MGP_C57BL6NJ_P0044868 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044869.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 39458792 40975338 + MGP_C57BL6NJ_P0044869 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044870.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 39458792 40755415 + MGP_C57BL6NJ_P0044870 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044871.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 39459001 40173200 + Lsamp protein_coding processed_transcript MGP_C57BL6NJ_T0044872.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 41128947 41754779 + MGP_C57BL6NJ_P0044872 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044873.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 41129126 41791443 + MGP_C57BL6NJ_P0044873 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044874.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 41129508 41135339 + MGP_C57BL6NJ_P0044874 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044875.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 41752549 41784205 + MGP_C57BL6NJ_P0044875 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0044876.1 MGP_C57BL6NJ_G0023238.1 mouse_genomes_project 16 41752590 41784030 + MGP_C57BL6NJ_P0044876 Lsamp protein_coding protein_coding MGP_C57BL6NJ_T0043880.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14895278 14911929 + MGP_C57BL6NJ_P0043880 Lztr1 protein_coding protein_coding MGP_C57BL6NJ_T0043881.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14895558 14911927 + MGP_C57BL6NJ_P0043881 Lztr1 protein_coding protein_coding MGP_C57BL6NJ_T0043882.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14895563 14910486 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043883.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14895563 14898816 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043884.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14895802 14902608 + Lztr1 protein_coding processed_transcript MGP_C57BL6NJ_T0043885.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14897652 14906682 + Lztr1 protein_coding processed_transcript MGP_C57BL6NJ_T0043886.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14903739 14906201 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043887.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14906590 14911927 + MGP_C57BL6NJ_P0043887 Lztr1 protein_coding protein_coding MGP_C57BL6NJ_T0043888.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14908315 14909890 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043889.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14909732 14911367 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043890.1 MGP_C57BL6NJ_G0022997.1 mouse_genomes_project 16 14910505 14911585 + Lztr1 protein_coding retained_intron MGP_C57BL6NJ_T0043945.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15169889 15182109 + MGP_C57BL6NJ_P0043945 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043946.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15169892 15204813 + MGP_C57BL6NJ_P0043946 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043947.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15169909 15182151 + MGP_C57BL6NJ_P0043947 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043948.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15169934 15189422 + Klhl22 protein_coding retained_intron MGP_C57BL6NJ_T0043949.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15169942 15204813 + MGP_C57BL6NJ_P0043949 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043950.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15170626 15182102 + MGP_C57BL6NJ_P0043950 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043951.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15173062 15204815 + MGP_C57BL6NJ_P0043951 Klhl22 protein_coding protein_coding MGP_C57BL6NJ_T0043952.1 MGP_C57BL6NJ_G0023005.1 mouse_genomes_project 16 15174352 15182126 + Klhl22 protein_coding retained_intron MGP_C57BL6NJ_T0044705.1 MGP_C57BL6NJ_G0023194.1 mouse_genomes_project 16 35178245 35199870 + MGP_C57BL6NJ_P0044705 Ccdc58 protein_coding protein_coding MGP_C57BL6NJ_T0044706.1 MGP_C57BL6NJ_G0023194.1 mouse_genomes_project 16 35178245 35199870 + MGP_C57BL6NJ_P0044706 Ccdc58 protein_coding protein_coding MGP_C57BL6NJ_T0044707.1 MGP_C57BL6NJ_G0023194.1 mouse_genomes_project 16 35187860 35199870 + MGP_C57BL6NJ_P0044707 Ccdc58 protein_coding protein_coding MGP_C57BL6NJ_T0043580.1 MGP_C57BL6NJ_G0022927.1 mouse_genomes_project 16 7762741 7763461 - MGP_C57BL6NJ_P0043580 Tnp2 protein_coding protein_coding MGP_C57BL6NJ_T0044157.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18220634 18232164 + MGP_C57BL6NJ_P0044157 Ap2m1 protein_coding protein_coding MGP_C57BL6NJ_T0044158.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18220636 18233017 + MGP_C57BL6NJ_P0044158 Ap2m1 protein_coding protein_coding MGP_C57BL6NJ_T0044159.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18220705 18222969 + Ap2m1 protein_coding retained_intron MGP_C57BL6NJ_T0044160.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18225752 18229435 + Ap2m1 protein_coding retained_intron MGP_C57BL6NJ_T0044161.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18229342 18231085 + Ap2m1 protein_coding retained_intron MGP_C57BL6NJ_T0044162.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18229474 18230109 + Ap2m1 protein_coding retained_intron MGP_C57BL6NJ_T0044163.1 MGP_C57BL6NJ_G0023061.1 mouse_genomes_project 16 18229917 18231070 + Ap2m1 protein_coding retained_intron MGP_C57BL6NJ_T0043773.1 MGP_C57BL6NJ_G0022977.1 mouse_genomes_project 16 14181636 14184078 - Vpreb1 protein_coding processed_transcript MGP_C57BL6NJ_T0043774.1 MGP_C57BL6NJ_G0022977.1 mouse_genomes_project 16 14181637 14182490 - MGP_C57BL6NJ_P0043774 Vpreb1 protein_coding protein_coding MGP_C57BL6NJ_T0043775.1 MGP_C57BL6NJ_G0022977.1 mouse_genomes_project 16 14181639 14184078 - Vpreb1 protein_coding processed_transcript MGP_C57BL6NJ_T0043797.1 MGP_C57BL6NJ_G0022980.1 mouse_genomes_project 16 14211182 14242566 + MGP_C57BL6NJ_P0043797 Ppm1f protein_coding protein_coding MGP_C57BL6NJ_T0043798.1 MGP_C57BL6NJ_G0022980.1 mouse_genomes_project 16 14211287 14230393 + Ppm1f protein_coding processed_transcript MGP_C57BL6NJ_T0102183.1 MGP_C57BL6NJ_G0040199.1 mouse_genomes_project 16 754298 758403 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102184.1 MGP_C57BL6NJ_G0040199.1 mouse_genomes_project 16 755357 758296 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0007020.1 MGP_C57BL6NJ_G0005788.1 mouse_genomes_project 16 44064690 44067742 + Gm26732 lincRNA lincRNA MGP_C57BL6NJ_T0045220.1 MGP_C57BL6NJ_G0023330.1 mouse_genomes_project 16 59797782 59803014 + MGP_C57BL6NJ_P0045220 Olfr183 protein_coding protein_coding MGP_C57BL6NJ_T0045221.1 MGP_C57BL6NJ_G0023330.1 mouse_genomes_project 16 59797801 59802550 + MGP_C57BL6NJ_P0045221 Olfr183 protein_coding protein_coding MGP_C57BL6NJ_T0100040.1 MGP_C57BL6NJ_G0038086.1 mouse_genomes_project 16 38335774 38335873 + Gm22500 snRNA snRNA MGP_C57BL6NJ_T0043807.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397268 14416681 + MGP_C57BL6NJ_P0043807 Ypel1 protein_coding protein_coding MGP_C57BL6NJ_T0043808.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397730 14416286 + Ypel1 protein_coding processed_transcript MGP_C57BL6NJ_T0043809.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397770 14408525 + Ypel1 protein_coding retained_intron MGP_C57BL6NJ_T0043810.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397771 14412039 + MGP_C57BL6NJ_P0043810 Ypel1 protein_coding protein_coding MGP_C57BL6NJ_T0043811.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397798 14416990 + MGP_C57BL6NJ_P0043811 Ypel1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043812.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397801 14412121 + MGP_C57BL6NJ_P0043812 Ypel1 protein_coding protein_coding MGP_C57BL6NJ_T0043813.1 MGP_C57BL6NJ_G0022982.1 mouse_genomes_project 16 14397876 14412639 + MGP_C57BL6NJ_P0043813 Ypel1 protein_coding protein_coding MGP_C57BL6NJ_T0043770.1 MGP_C57BL6NJ_G0022976.1 mouse_genomes_project 16 14173915 14177230 - MGP_C57BL6NJ_P0043770 Igll1 protein_coding protein_coding MGP_C57BL6NJ_T0043771.1 MGP_C57BL6NJ_G0022976.1 mouse_genomes_project 16 14173915 14177062 - MGP_C57BL6NJ_P0043771 Igll1 protein_coding protein_coding MGP_C57BL6NJ_T0043772.1 MGP_C57BL6NJ_G0022976.1 mouse_genomes_project 16 14173918 14177230 - Igll1 protein_coding retained_intron MGP_C57BL6NJ_T0101313.1 MGP_C57BL6NJ_G0039359.1 mouse_genomes_project 16 5268174 5268256 - Gm23706 snoRNA snoRNA MGP_C57BL6NJ_T0013483.1 MGP_C57BL6NJ_G0011528.1 mouse_genomes_project 16 42856391 42857547 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045576.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95711657 95753932 - MGP_C57BL6NJ_P0045576 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045577.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95711677 95753759 - MGP_C57BL6NJ_P0045577 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045578.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95711861 95715268 - Cryzl1 protein_coding processed_transcript MGP_C57BL6NJ_T0045579.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95711941 95753580 - MGP_C57BL6NJ_P0045579 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045580.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95714436 95732617 - MGP_C57BL6NJ_P0045580 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045581.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95714462 95741117 - MGP_C57BL6NJ_P0045581 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045582.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95716493 95753658 - MGP_C57BL6NJ_P0045582 Cryzl1 protein_coding protein_coding MGP_C57BL6NJ_T0045583.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95716746 95721382 - Cryzl1 protein_coding retained_intron MGP_C57BL6NJ_T0045584.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95729117 95753557 - Cryzl1 protein_coding retained_intron MGP_C57BL6NJ_T0045585.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95738083 95753555 - Cryzl1 protein_coding retained_intron MGP_C57BL6NJ_T0045586.1 MGP_C57BL6NJ_G0023466.1 mouse_genomes_project 16 95738720 95753565 - Cryzl1 protein_coding processed_transcript MGP_C57BL6NJ_T0013431.1 MGP_C57BL6NJ_G0011476.1 mouse_genomes_project 16 515559 515637 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003807.1 MGP_C57BL6NJ_G0003435.1 mouse_genomes_project 16 14422759 14426295 + Gm15585 antisense antisense MGP_C57BL6NJ_T0044568.1 MGP_C57BL6NJ_G0023162.1 mouse_genomes_project 16 31581980 31590518 - MGP_C57BL6NJ_P0044568 Gm933 protein_coding protein_coding MGP_C57BL6NJ_T0043627.1 MGP_C57BL6NJ_G0022939.1 mouse_genomes_project 16 8353949 8360211 + MGP_C57BL6NJ_P0043627 Tnfrsf17 protein_coding protein_coding MGP_C57BL6NJ_T0100045.1 MGP_C57BL6NJ_G0038091.1 mouse_genomes_project 16 49027158 49027262 - Gm22576 snRNA snRNA MGP_C57BL6NJ_T0100031.1 MGP_C57BL6NJ_G0038077.1 mouse_genomes_project 16 35249106 35249209 - Gm23080 snRNA snRNA MGP_C57BL6NJ_T0006988.1 MGP_C57BL6NJ_G0005759.1 mouse_genomes_project 16 342581 364619 + Gm26675 lincRNA lincRNA MGP_C57BL6NJ_T0013492.1 MGP_C57BL6NJ_G0011537.1 mouse_genomes_project 16 50260349 50262849 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013432.1 MGP_C57BL6NJ_G0011477.1 mouse_genomes_project 16 853180 853505 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011673.1 MGP_C57BL6NJ_G0009758.1 mouse_genomes_project 16 47543138 47543452 - Gm25318 misc_RNA misc_RNA MGP_C57BL6NJ_T0007011.1 MGP_C57BL6NJ_G0005779.1 mouse_genomes_project 16 28470903 28484813 + 4632428C04Rik lincRNA lincRNA MGP_C57BL6NJ_T0045283.1 MGP_C57BL6NJ_G0023362.1 mouse_genomes_project 16 66982437 66988816 + Pou1f1 protein_coding retained_intron MGP_C57BL6NJ_T0045284.1 MGP_C57BL6NJ_G0023362.1 mouse_genomes_project 16 66982437 67000043 + MGP_C57BL6NJ_P0045284 Pou1f1 protein_coding protein_coding MGP_C57BL6NJ_T0045285.1 MGP_C57BL6NJ_G0023362.1 mouse_genomes_project 16 66982473 66998143 + MGP_C57BL6NJ_P0045285 Pou1f1 protein_coding protein_coding MGP_C57BL6NJ_T0045286.1 MGP_C57BL6NJ_G0023362.1 mouse_genomes_project 16 66986549 66998143 + MGP_C57BL6NJ_P0045286 Pou1f1 protein_coding protein_coding MGP_C57BL6NJ_T0010385.1 MGP_C57BL6NJ_G0008470.1 mouse_genomes_project 16 102429036 102429095 - Mir6964 miRNA miRNA MGP_C57BL6NJ_T0003839.1 MGP_C57BL6NJ_G0003460.1 mouse_genomes_project 16 56610767 56612117 - Zbtb11os1 antisense antisense MGP_C57BL6NJ_T0017964.1 MGP_C57BL6NJ_G0015712.1 mouse_genomes_project 16 56601526 56618221 + Gm28037 processed_transcript processed_transcript MGP_C57BL6NJ_T0045659.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98110343 98132311 + MGP_C57BL6NJ_P0045659 Chaf1b protein_coding protein_coding MGP_C57BL6NJ_T0045660.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98110366 98132273 + MGP_C57BL6NJ_P0045660 Chaf1b protein_coding protein_coding MGP_C57BL6NJ_T0045661.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98110373 98120731 + Chaf1b protein_coding retained_intron MGP_C57BL6NJ_T0045662.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98110458 98111914 + MGP_C57BL6NJ_P0045662 Chaf1b protein_coding protein_coding MGP_C57BL6NJ_T0045663.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98110644 98113595 + MGP_C57BL6NJ_P0045663 Chaf1b protein_coding protein_coding MGP_C57BL6NJ_T0045664.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98113152 98119232 + Chaf1b protein_coding processed_transcript MGP_C57BL6NJ_T0045665.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98119183 98126325 + Chaf1b protein_coding retained_intron MGP_C57BL6NJ_T0045666.1 MGP_C57BL6NJ_G0023482.1 mouse_genomes_project 16 98130888 98132306 + Chaf1b protein_coding retained_intron MGP_C57BL6NJ_T0044331.1 MGP_C57BL6NJ_G0023097.1 mouse_genomes_project 16 21303193 21307921 - MGP_C57BL6NJ_P0044331 BC106179 protein_coding protein_coding MGP_C57BL6NJ_T0043367.1 MGP_C57BL6NJ_G0022874.1 mouse_genomes_project 16 516038 516405 - MGP_C57BL6NJ_P0043367 Gm10076 protein_coding protein_coding MGP_C57BL6NJ_T0044810.1 MGP_C57BL6NJ_G0023220.1 mouse_genomes_project 16 37259829 37360135 + MGP_C57BL6NJ_P0044810 Gpr156 protein_coding protein_coding MGP_C57BL6NJ_T0044487.1 MGP_C57BL6NJ_G0023142.1 mouse_genomes_project 16 30630582 30671402 - MGP_C57BL6NJ_P0044487 Senp5 protein_coding protein_coding MGP_C57BL6NJ_T0044488.1 MGP_C57BL6NJ_G0023142.1 mouse_genomes_project 16 30631594 30657737 - MGP_C57BL6NJ_P0044488 Senp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044489.1 MGP_C57BL6NJ_G0023142.1 mouse_genomes_project 16 30643890 30658913 - MGP_C57BL6NJ_P0044489 Senp5 protein_coding protein_coding MGP_C57BL6NJ_T0044490.1 MGP_C57BL6NJ_G0023142.1 mouse_genomes_project 16 30645550 30671293 - Senp5 protein_coding retained_intron MGP_C57BL6NJ_T0099027.1 MGP_C57BL6NJ_G0037091.1 mouse_genomes_project 16 11141045 11141155 - Gm26213 rRNA rRNA MGP_C57BL6NJ_T0010325.1 MGP_C57BL6NJ_G0008410.1 mouse_genomes_project 16 8280938 8281016 - Mir1945 miRNA miRNA MGP_C57BL6NJ_T0101330.1 MGP_C57BL6NJ_G0039376.1 mouse_genomes_project 16 34791825 34791972 - Gm25967 snoRNA snoRNA MGP_C57BL6NJ_T0045315.1 MGP_C57BL6NJ_G0023370.1 mouse_genomes_project 16 78002819 78050825 - MGP_C57BL6NJ_P0045315 Lipi protein_coding protein_coding MGP_C57BL6NJ_T0045316.1 MGP_C57BL6NJ_G0023370.1 mouse_genomes_project 16 78002849 78029518 - Lipi protein_coding processed_transcript MGP_C57BL6NJ_T0001087.1 MGP_C57BL6NJ_G0000995.1 mouse_genomes_project 16 39608868 39608911 + TEC TEC MGP_C57BL6NJ_T0044419.1 MGP_C57BL6NJ_G0023127.1 mouse_genomes_project 16 28805620 28808714 - MGP_C57BL6NJ_P0044419 Gp5 protein_coding protein_coding MGP_C57BL6NJ_T0045419.1 MGP_C57BL6NJ_G0023404.1 mouse_genomes_project 16 92332833 92333806 - MGP_C57BL6NJ_P0045419 Krtap26-1 protein_coding protein_coding MGP_C57BL6NJ_T0044086.1 MGP_C57BL6NJ_G0023037.1 mouse_genomes_project 16 16455739 16460195 - MGP_C57BL6NJ_P0044086 Mrpl40 protein_coding protein_coding MGP_C57BL6NJ_T0044087.1 MGP_C57BL6NJ_G0023037.1 mouse_genomes_project 16 16455947 16459967 - MGP_C57BL6NJ_P0044087 Mrpl40 protein_coding protein_coding MGP_C57BL6NJ_T0045158.1 MGP_C57BL6NJ_G0023306.1 mouse_genomes_project 16 57447580 57515239 - MGP_C57BL6NJ_P0045158 Adgrg7 protein_coding protein_coding MGP_C57BL6NJ_T0010339.1 MGP_C57BL6NJ_G0008424.1 mouse_genomes_project 16 16918708 16918818 + Gm23612 miRNA miRNA MGP_C57BL6NJ_T0045233.1 MGP_C57BL6NJ_G0023338.1 mouse_genomes_project 16 60058529 60059660 - MGP_C57BL6NJ_P0045233 Olfr198 protein_coding protein_coding MGP_C57BL6NJ_T0044959.1 MGP_C57BL6NJ_G0023254.1 mouse_genomes_project 16 44479224 44492208 + MGP_C57BL6NJ_P0044959 Nepro protein_coding protein_coding MGP_C57BL6NJ_T0044960.1 MGP_C57BL6NJ_G0023254.1 mouse_genomes_project 16 44479280 44486288 + MGP_C57BL6NJ_P0044960 Nepro protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044961.1 MGP_C57BL6NJ_G0023254.1 mouse_genomes_project 16 44479280 44491497 + MGP_C57BL6NJ_P0044961 Nepro protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044962.1 MGP_C57BL6NJ_G0023254.1 mouse_genomes_project 16 44481090 44489053 + Nepro protein_coding retained_intron MGP_C57BL6NJ_T0044963.1 MGP_C57BL6NJ_G0023254.1 mouse_genomes_project 16 44482042 44489650 + MGP_C57BL6NJ_P0044963 Nepro protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100024.1 MGP_C57BL6NJ_G0038070.1 mouse_genomes_project 16 21065712 21065818 + Gm23715 snRNA snRNA MGP_C57BL6NJ_T0045290.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68197857 69277064 - MGP_C57BL6NJ_P0045290 Cadm2 protein_coding protein_coding MGP_C57BL6NJ_T0045291.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68204179 69276979 - MGP_C57BL6NJ_P0045291 Cadm2 protein_coding protein_coding MGP_C57BL6NJ_T0045292.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68204624 69277064 - MGP_C57BL6NJ_P0045292 Cadm2 protein_coding protein_coding MGP_C57BL6NJ_T0045293.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68205527 68511948 - MGP_C57BL6NJ_P0045293 Cadm2 protein_coding protein_coding MGP_C57BL6NJ_T0045294.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68328245 69276649 - MGP_C57BL6NJ_P0045294 Cadm2 protein_coding protein_coding MGP_C57BL6NJ_T0045295.1 MGP_C57BL6NJ_G0023365.1 mouse_genomes_project 16 68355158 68480685 - Cadm2 protein_coding processed_transcript MGP_C57BL6NJ_T0044704.1 MGP_C57BL6NJ_G0023193.1 mouse_genomes_project 16 35149322 35178101 - MGP_C57BL6NJ_P0044704 Fam162a protein_coding protein_coding MGP_C57BL6NJ_T0044124.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17925561 17949410 - MGP_C57BL6NJ_P0044124 Parl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044125.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17925561 17949452 - MGP_C57BL6NJ_P0044125 Parl protein_coding protein_coding MGP_C57BL6NJ_T0044126.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17925744 17928986 - Parl protein_coding retained_intron MGP_C57BL6NJ_T0044127.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17928485 17949405 - Parl protein_coding retained_intron MGP_C57BL6NJ_T0044128.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17931269 17933982 - Parl protein_coding retained_intron MGP_C57BL6NJ_T0044129.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17932671 17948394 - Parl protein_coding processed_transcript MGP_C57BL6NJ_T0044130.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17932697 17949419 - MGP_C57BL6NJ_P0044130 Parl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044131.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17939984 17945230 - Parl protein_coding retained_intron MGP_C57BL6NJ_T0044132.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17944661 17948878 - Parl protein_coding processed_transcript MGP_C57BL6NJ_T0044133.1 MGP_C57BL6NJ_G0023056.1 mouse_genomes_project 16 17945188 17949426 - Parl protein_coding retained_intron MGP_C57BL6NJ_T0102885.1 MGP_C57BL6NJ_G0040679.1 mouse_genomes_project 16 13959255 13959376 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0044564.1 MGP_C57BL6NJ_G0023161.1 mouse_genomes_project 16 31553811 31574661 - MGP_C57BL6NJ_P0044564 Muc20 protein_coding protein_coding MGP_C57BL6NJ_T0044567.1 MGP_C57BL6NJ_G0023161.1 mouse_genomes_project 16 31563243 31574661 - MGP_C57BL6NJ_P0044567 Muc20 protein_coding protein_coding MGP_C57BL6NJ_T0045288.1 MGP_C57BL6NJ_G0023364.1 mouse_genomes_project 16 67293352 67340587 + MGP_C57BL6NJ_P0045288 Vgll3 protein_coding protein_coding MGP_C57BL6NJ_T0045289.1 MGP_C57BL6NJ_G0023364.1 mouse_genomes_project 16 67293352 67338243 + MGP_C57BL6NJ_P0045289 Vgll3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044299.1 MGP_C57BL6NJ_G0023090.1 mouse_genomes_project 16 20859339 20868716 + MGP_C57BL6NJ_P0044299 Ahsg protein_coding protein_coding MGP_C57BL6NJ_T0043814.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14416499 14444757 - MGP_C57BL6NJ_P0043814 Ppil2 protein_coding protein_coding MGP_C57BL6NJ_T0043815.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14416499 14444762 - MGP_C57BL6NJ_P0043815 Ppil2 protein_coding protein_coding MGP_C57BL6NJ_T0043816.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14417260 14444747 - MGP_C57BL6NJ_P0043816 Ppil2 protein_coding protein_coding MGP_C57BL6NJ_T0043817.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14418550 14419404 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0043818.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14420046 14421462 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0043819.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14422791 14433572 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0043820.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14424865 14427089 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0043821.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14425705 14444720 - MGP_C57BL6NJ_P0043821 Ppil2 protein_coding protein_coding MGP_C57BL6NJ_T0043822.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14426648 14444741 - Ppil2 protein_coding processed_transcript MGP_C57BL6NJ_T0043823.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14426953 14444718 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0043824.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14439090 14444741 - Ppil2 protein_coding processed_transcript MGP_C57BL6NJ_T0043825.1 MGP_C57BL6NJ_G0022983.1 mouse_genomes_project 16 14442354 14444737 - Ppil2 protein_coding retained_intron MGP_C57BL6NJ_T0013442.1 MGP_C57BL6NJ_G0011487.1 mouse_genomes_project 16 11212932 11213943 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044134.1 MGP_C57BL6NJ_G0023057.1 mouse_genomes_project 16 17955656 17969228 - protein_coding processed_transcript MGP_C57BL6NJ_T0044135.1 MGP_C57BL6NJ_G0023057.1 mouse_genomes_project 16 17955656 17969285 - MGP_C57BL6NJ_P0044135 protein_coding protein_coding MGP_C57BL6NJ_T0044136.1 MGP_C57BL6NJ_G0023057.1 mouse_genomes_project 16 17956939 17961480 - protein_coding processed_transcript MGP_C57BL6NJ_T0044137.1 MGP_C57BL6NJ_G0023057.1 mouse_genomes_project 16 17957045 17964020 - MGP_C57BL6NJ_P0044137 protein_coding protein_coding MGP_C57BL6NJ_T0044138.1 MGP_C57BL6NJ_G0023057.1 mouse_genomes_project 16 17962289 17963321 - protein_coding processed_transcript MGP_C57BL6NJ_T0013507.1 MGP_C57BL6NJ_G0011552.1 mouse_genomes_project 16 78661758 78662506 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044636.1 MGP_C57BL6NJ_G0023176.1 mouse_genomes_project 16 32907305 32919560 - MGP_C57BL6NJ_P0044636 Umps protein_coding protein_coding MGP_C57BL6NJ_T0044637.1 MGP_C57BL6NJ_G0023176.1 mouse_genomes_project 16 32907317 32919525 - MGP_C57BL6NJ_P0044637 Umps protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100018.1 MGP_C57BL6NJ_G0038064.1 mouse_genomes_project 16 14715702 14715809 - Gm24927 snRNA snRNA MGP_C57BL6NJ_T0013449.1 MGP_C57BL6NJ_G0011494.1 mouse_genomes_project 16 14157107 14157357 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045282.1 MGP_C57BL6NJ_G0023361.1 mouse_genomes_project 16 66374667 66577413 - MGP_C57BL6NJ_P0045282 Htr1f protein_coding protein_coding MGP_C57BL6NJ_T0001097.1 MGP_C57BL6NJ_G0001004.1 mouse_genomes_project 16 80023627 80027002 + TEC TEC MGP_C57BL6NJ_T0017999.1 MGP_C57BL6NJ_G0015725.1 mouse_genomes_project 16 100476025 100478679 + Gm15342 processed_transcript processed_transcript MGP_C57BL6NJ_T0044378.1 MGP_C57BL6NJ_G0023116.1 mouse_genomes_project 16 25693708 25755089 + MGP_C57BL6NJ_P0044378 Ccdc50 protein_coding protein_coding MGP_C57BL6NJ_T0044379.1 MGP_C57BL6NJ_G0023116.1 mouse_genomes_project 16 25693819 25749264 + MGP_C57BL6NJ_P0044379 Ccdc50 protein_coding protein_coding MGP_C57BL6NJ_T0044380.1 MGP_C57BL6NJ_G0023116.1 mouse_genomes_project 16 25693819 25742552 + MGP_C57BL6NJ_P0044380 Ccdc50 protein_coding protein_coding MGP_C57BL6NJ_T0044381.1 MGP_C57BL6NJ_G0023116.1 mouse_genomes_project 16 25694775 25741232 + MGP_C57BL6NJ_P0044381 Ccdc50 protein_coding protein_coding MGP_C57BL6NJ_T0044382.1 MGP_C57BL6NJ_G0023116.1 mouse_genomes_project 16 25694807 25695931 + Ccdc50 protein_coding processed_transcript MGP_C57BL6NJ_T0101338.1 MGP_C57BL6NJ_G0039384.1 mouse_genomes_project 16 53323564 53323690 - Gm25723 snoRNA snoRNA MGP_C57BL6NJ_T0044252.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228100 19480212 + MGP_C57BL6NJ_P0044252 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044253.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228100 19409801 + MGP_C57BL6NJ_P0044253 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044254.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228100 19480212 + MGP_C57BL6NJ_P0044254 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044255.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228151 19480212 + MGP_C57BL6NJ_P0044255 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044256.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228178 19359828 + MGP_C57BL6NJ_P0044256 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044257.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228183 19480204 + MGP_C57BL6NJ_P0044257 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044258.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19228254 19239956 + MGP_C57BL6NJ_P0044258 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044259.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19274582 19477104 + MGP_C57BL6NJ_P0044259 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044260.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19320920 19480207 + MGP_C57BL6NJ_P0044260 Vps8 protein_coding protein_coding MGP_C57BL6NJ_T0044261.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19340910 19346610 + Vps8 protein_coding retained_intron MGP_C57BL6NJ_T0044262.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19340980 19373059 + MGP_C57BL6NJ_P0044262 Vps8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044263.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19398917 19412468 + Vps8 protein_coding retained_intron MGP_C57BL6NJ_T0044264.1 MGP_C57BL6NJ_G0023076.1 mouse_genomes_project 16 19460653 19479948 + Vps8 protein_coding processed_transcript MGP_C57BL6NJ_T0003850.1 MGP_C57BL6NJ_G0003469.1 mouse_genomes_project 16 100607515 100609628 - Gm15317 antisense antisense MGP_C57BL6NJ_T0045753.1 MGP_C57BL6NJ_G0023495.1 mouse_genomes_project 16 100416081 100426846 - MGP_C57BL6NJ_P0045753 Psmg1 protein_coding protein_coding MGP_C57BL6NJ_T0045754.1 MGP_C57BL6NJ_G0023495.1 mouse_genomes_project 16 100416185 100426776 - MGP_C57BL6NJ_P0045754 Psmg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045755.1 MGP_C57BL6NJ_G0023495.1 mouse_genomes_project 16 100416185 100426776 - MGP_C57BL6NJ_P0045755 Psmg1 protein_coding protein_coding MGP_C57BL6NJ_T0045756.1 MGP_C57BL6NJ_G0023495.1 mouse_genomes_project 16 100423871 100425784 - Psmg1 protein_coding retained_intron MGP_C57BL6NJ_T0045435.1 MGP_C57BL6NJ_G0023418.1 mouse_genomes_project 16 92601374 92601857 - MGP_C57BL6NJ_P0045435 Krtap19-5 protein_coding protein_coding MGP_C57BL6NJ_T0044071.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393285 16397268 + MGP_C57BL6NJ_P0044071 Ufd1l protein_coding protein_coding MGP_C57BL6NJ_T0044072.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393330 16416191 + MGP_C57BL6NJ_P0044072 Ufd1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044073.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393338 16417137 + MGP_C57BL6NJ_P0044073 Ufd1l protein_coding protein_coding MGP_C57BL6NJ_T0044074.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393800 16397821 + Ufd1l protein_coding processed_transcript MGP_C57BL6NJ_T0044075.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393800 16417142 + MGP_C57BL6NJ_P0044075 Ufd1l protein_coding protein_coding MGP_C57BL6NJ_T0044076.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393827 16409578 + MGP_C57BL6NJ_P0044076 Ufd1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044077.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16393862 16406953 + MGP_C57BL6NJ_P0044077 Ufd1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044078.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16405136 16416135 + Ufd1l protein_coding retained_intron MGP_C57BL6NJ_T0044079.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16408941 16410336 + MGP_C57BL6NJ_P0044079 Ufd1l protein_coding protein_coding MGP_C57BL6NJ_T0044080.1 MGP_C57BL6NJ_G0023034.1 mouse_genomes_project 16 16409129 16416285 + Ufd1l protein_coding retained_intron MGP_C57BL6NJ_T0001085.1 MGP_C57BL6NJ_G0000993.1 mouse_genomes_project 16 16838869 16840179 + TEC TEC MGP_C57BL6NJ_T0045014.1 MGP_C57BL6NJ_G0023266.1 mouse_genomes_project 16 45328103 45409330 + MGP_C57BL6NJ_P0045014 Slc9c1 protein_coding protein_coding MGP_C57BL6NJ_T0045015.1 MGP_C57BL6NJ_G0023266.1 mouse_genomes_project 16 45332455 45409215 + MGP_C57BL6NJ_P0045015 Slc9c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045016.1 MGP_C57BL6NJ_G0023266.1 mouse_genomes_project 16 45332455 45409215 + MGP_C57BL6NJ_P0045016 Slc9c1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007036.1 MGP_C57BL6NJ_G0005798.1 mouse_genomes_project 16 78515788 78524747 + Gm15555 lincRNA lincRNA MGP_C57BL6NJ_T0045420.1 MGP_C57BL6NJ_G0023405.1 mouse_genomes_project 16 92352781 92353427 - MGP_C57BL6NJ_P0045420 Krtap27-1 protein_coding protein_coding MGP_C57BL6NJ_T0045817.1 MGP_C57BL6NJ_G0023510.1 mouse_genomes_project 16 102291554 102314495 - MGP_C57BL6NJ_P0045817 Ripk4 protein_coding protein_coding MGP_C57BL6NJ_T0044789.1 MGP_C57BL6NJ_G0023213.1 mouse_genomes_project 16 36820468 36850451 - MGP_C57BL6NJ_P0044789 Gtf2e1 protein_coding protein_coding MGP_C57BL6NJ_T0044790.1 MGP_C57BL6NJ_G0023213.1 mouse_genomes_project 16 36843181 36850438 - Gtf2e1 protein_coding retained_intron MGP_C57BL6NJ_T0045078.1 MGP_C57BL6NJ_G0023286.1 mouse_genomes_project 16 49153712 49302326 + MGP_C57BL6NJ_P0045078 Myh15 protein_coding protein_coding MGP_C57BL6NJ_T0011668.1 MGP_C57BL6NJ_G0009753.1 mouse_genomes_project 16 20540658 20540850 + Gm22481 misc_RNA misc_RNA MGP_C57BL6NJ_T0044717.1 MGP_C57BL6NJ_G0023202.1 mouse_genomes_project 16 35714588 35789503 - MGP_C57BL6NJ_P0044717 Casr protein_coding protein_coding MGP_C57BL6NJ_T0044718.1 MGP_C57BL6NJ_G0023202.1 mouse_genomes_project 16 35714588 35789503 - MGP_C57BL6NJ_P0044718 Casr protein_coding protein_coding MGP_C57BL6NJ_T0044719.1 MGP_C57BL6NJ_G0023202.1 mouse_genomes_project 16 35715359 35788975 - MGP_C57BL6NJ_P0044719 Casr protein_coding protein_coding MGP_C57BL6NJ_T0044720.1 MGP_C57BL6NJ_G0023202.1 mouse_genomes_project 16 35740337 35789510 - Casr protein_coding processed_transcript MGP_C57BL6NJ_T0010375.1 MGP_C57BL6NJ_G0008460.1 mouse_genomes_project 16 80715890 80716001 + Gm25025 miRNA miRNA MGP_C57BL6NJ_T0044292.1 MGP_C57BL6NJ_G0023087.1 mouse_genomes_project 16 20768024 20774230 - MGP_C57BL6NJ_P0044292 Crygs protein_coding protein_coding MGP_C57BL6NJ_T0045620.1 MGP_C57BL6NJ_G0023469.1 mouse_genomes_project 16 96104677 96133826 + MGP_C57BL6NJ_P0045620 Slc5a3 protein_coding protein_coding MGP_C57BL6NJ_T0045621.1 MGP_C57BL6NJ_G0023469.1 mouse_genomes_project 16 96124416 96130161 + MGP_C57BL6NJ_P0045621 Slc5a3 protein_coding protein_coding MGP_C57BL6NJ_T0045059.1 MGP_C57BL6NJ_G0023279.1 mouse_genomes_project 16 48473896 48677453 + MGP_C57BL6NJ_P0045059 Morc1 protein_coding protein_coding MGP_C57BL6NJ_T0007001.1 MGP_C57BL6NJ_G0005771.1 mouse_genomes_project 16 19038053 19096781 - lincRNA lincRNA MGP_C57BL6NJ_T0045339.1 MGP_C57BL6NJ_G0023379.1 mouse_genomes_project 16 81054597 81068970 - MGP_C57BL6NJ_P0045339 protein_coding protein_coding MGP_C57BL6NJ_T0101316.1 MGP_C57BL6NJ_G0039362.1 mouse_genomes_project 16 16906643 16906769 + Gm22158 snoRNA snoRNA MGP_C57BL6NJ_T0013501.1 MGP_C57BL6NJ_G0011546.1 mouse_genomes_project 16 66366481 66368942 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001106.1 MGP_C57BL6NJ_G0001013.1 mouse_genomes_project 16 80309456 80311589 + TEC TEC MGP_C57BL6NJ_T0043799.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14302671 14374011 + MGP_C57BL6NJ_P0043799 Mapk1 protein_coding protein_coding MGP_C57BL6NJ_T0043800.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14302671 14371307 + MGP_C57BL6NJ_P0043800 Mapk1 protein_coding protein_coding MGP_C57BL6NJ_T0043801.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14302856 14365598 + MGP_C57BL6NJ_P0043801 Mapk1 protein_coding protein_coding MGP_C57BL6NJ_T0043802.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14343555 14349198 + Mapk1 protein_coding retained_intron MGP_C57BL6NJ_T0043803.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14351168 14352337 + Mapk1 protein_coding retained_intron MGP_C57BL6NJ_T0043804.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14351508 14370421 + MGP_C57BL6NJ_P0043804 Mapk1 protein_coding protein_coding MGP_C57BL6NJ_T0043805.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14361895 14365263 + Mapk1 protein_coding processed_transcript MGP_C57BL6NJ_T0043806.1 MGP_C57BL6NJ_G0022981.1 mouse_genomes_project 16 14362106 14370768 + Mapk1 protein_coding processed_transcript MGP_C57BL6NJ_T0098838.1 MGP_C57BL6NJ_G0036902.1 mouse_genomes_project 16 93210403 93210847 - pseudogene pseudogene MGP_C57BL6NJ_T0010354.1 MGP_C57BL6NJ_G0008439.1 mouse_genomes_project 16 40763796 40763856 + miRNA miRNA MGP_C57BL6NJ_T0100053.1 MGP_C57BL6NJ_G0038099.1 mouse_genomes_project 16 73233612 73233719 - Gm24968 snRNA snRNA MGP_C57BL6NJ_T0044862.1 MGP_C57BL6NJ_G0023235.1 mouse_genomes_project 16 38173362 38204376 - MGP_C57BL6NJ_P0044862 Upk1b protein_coding protein_coding MGP_C57BL6NJ_T0100029.1 MGP_C57BL6NJ_G0038075.1 mouse_genomes_project 16 34251543 34251671 - Gm25179 snRNA snRNA MGP_C57BL6NJ_T0044374.1 MGP_C57BL6NJ_G0023113.1 mouse_genomes_project 16 25228018 25263951 - MGP_C57BL6NJ_P0044374 Gmnc protein_coding protein_coding MGP_C57BL6NJ_T0044375.1 MGP_C57BL6NJ_G0023113.1 mouse_genomes_project 16 25232067 25239698 - MGP_C57BL6NJ_P0044375 Gmnc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043491.1 MGP_C57BL6NJ_G0022905.1 mouse_genomes_project 16 1861348 1873009 - MGP_C57BL6NJ_P0043491 Eef2kmt protein_coding protein_coding MGP_C57BL6NJ_T0043492.1 MGP_C57BL6NJ_G0022905.1 mouse_genomes_project 16 1862075 1872967 - Eef2kmt protein_coding retained_intron MGP_C57BL6NJ_T0043493.1 MGP_C57BL6NJ_G0022905.1 mouse_genomes_project 16 1864323 1872982 - MGP_C57BL6NJ_P0043493 Eef2kmt protein_coding protein_coding MGP_C57BL6NJ_T0043494.1 MGP_C57BL6NJ_G0022905.1 mouse_genomes_project 16 1864335 1865819 - Eef2kmt protein_coding retained_intron MGP_C57BL6NJ_T0043495.1 MGP_C57BL6NJ_G0022905.1 mouse_genomes_project 16 1866023 1872955 - Eef2kmt protein_coding retained_intron MGP_C57BL6NJ_T0044242.1 MGP_C57BL6NJ_G0023072.1 mouse_genomes_project 16 18432450 18437779 - MGP_C57BL6NJ_P0044242 Thpo protein_coding protein_coding MGP_C57BL6NJ_T0045207.1 MGP_C57BL6NJ_G0023324.1 mouse_genomes_project 16 59603169 59604333 - MGP_C57BL6NJ_P0045207 Olfr173 protein_coding protein_coding MGP_C57BL6NJ_T0045208.1 MGP_C57BL6NJ_G0023324.1 mouse_genomes_project 16 59603839 59607989 - MGP_C57BL6NJ_P0045208 Olfr173 protein_coding protein_coding MGP_C57BL6NJ_T0013476.1 MGP_C57BL6NJ_G0011521.1 mouse_genomes_project 16 36035362 36036700 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045231.1 MGP_C57BL6NJ_G0023336.1 mouse_genomes_project 16 59998510 59999505 + MGP_C57BL6NJ_P0045231 Olfr195 protein_coding protein_coding MGP_C57BL6NJ_T0043439.1 MGP_C57BL6NJ_G0022888.1 mouse_genomes_project 16 1359067 1383639 - MGP_C57BL6NJ_P0043439 Cdip1 protein_coding protein_coding MGP_C57BL6NJ_T0043440.1 MGP_C57BL6NJ_G0022888.1 mouse_genomes_project 16 1360447 1365119 - Cdip1 protein_coding retained_intron MGP_C57BL6NJ_T0043441.1 MGP_C57BL6NJ_G0022888.1 mouse_genomes_project 16 1360447 1383941 - MGP_C57BL6NJ_P0043441 Cdip1 protein_coding protein_coding MGP_C57BL6NJ_T0043442.1 MGP_C57BL6NJ_G0022888.1 mouse_genomes_project 16 1360945 1383579 - MGP_C57BL6NJ_P0043442 Cdip1 protein_coding protein_coding MGP_C57BL6NJ_T0043443.1 MGP_C57BL6NJ_G0022888.1 mouse_genomes_project 16 1362915 1383915 - Cdip1 protein_coding retained_intron MGP_C57BL6NJ_T0044139.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 17981032 18095238 - MGP_C57BL6NJ_P0044139 Abcc5 protein_coding protein_coding MGP_C57BL6NJ_T0044140.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 17981035 18095179 - MGP_C57BL6NJ_P0044140 Abcc5 protein_coding protein_coding MGP_C57BL6NJ_T0044141.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 17981037 18066725 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044142.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 17994303 18022902 - Abcc5 protein_coding processed_transcript MGP_C57BL6NJ_T0044143.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18001462 18023096 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044144.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18034194 18043768 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044145.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18045587 18063507 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044146.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18059778 18094830 - MGP_C57BL6NJ_P0044146 Abcc5 protein_coding protein_coding MGP_C57BL6NJ_T0044147.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18065920 18067390 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044148.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18067863 18095168 - Abcc5 protein_coding retained_intron MGP_C57BL6NJ_T0044149.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18067864 18095198 - MGP_C57BL6NJ_P0044149 Abcc5 protein_coding protein_coding MGP_C57BL6NJ_T0044150.1 MGP_C57BL6NJ_G0023058.1 mouse_genomes_project 16 18067865 18071819 - Abcc5 protein_coding processed_transcript MGP_C57BL6NJ_T0003840.1 MGP_C57BL6NJ_G0003461.1 mouse_genomes_project 16 61639846 61647235 + Gm9017 antisense antisense MGP_C57BL6NJ_T0003841.1 MGP_C57BL6NJ_G0003461.1 mouse_genomes_project 16 61640835 61647515 + Gm9017 antisense antisense MGP_C57BL6NJ_T0044385.1 MGP_C57BL6NJ_G0023119.1 mouse_genomes_project 16 27613423 27634252 + MGP_C57BL6NJ_P0044385 Hrasls protein_coding protein_coding MGP_C57BL6NJ_T0044386.1 MGP_C57BL6NJ_G0023119.1 mouse_genomes_project 16 27613836 27632103 + MGP_C57BL6NJ_P0044386 Hrasls protein_coding protein_coding MGP_C57BL6NJ_T0044387.1 MGP_C57BL6NJ_G0023119.1 mouse_genomes_project 16 27613858 27631949 + Hrasls protein_coding processed_transcript MGP_C57BL6NJ_T0044388.1 MGP_C57BL6NJ_G0023119.1 mouse_genomes_project 16 27613898 27624060 + MGP_C57BL6NJ_P0044388 Hrasls protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043519.1 MGP_C57BL6NJ_G0022912.1 mouse_genomes_project 16 5476286 5490180 - MGP_C57BL6NJ_P0043519 Carhsp1 protein_coding protein_coding MGP_C57BL6NJ_T0043700.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356870 11391237 + MGP_C57BL6NJ_P0043700 Nde1 protein_coding protein_coding MGP_C57BL6NJ_T0043701.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356882 11391137 + MGP_C57BL6NJ_P0043701 Nde1 protein_coding protein_coding MGP_C57BL6NJ_T0043702.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356893 11391227 + MGP_C57BL6NJ_P0043702 Nde1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043703.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356899 11364425 + Nde1 protein_coding retained_intron MGP_C57BL6NJ_T0043704.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356940 11391227 + MGP_C57BL6NJ_P0043704 Nde1 protein_coding protein_coding MGP_C57BL6NJ_T0043705.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11356944 11388749 + Nde1 protein_coding processed_transcript MGP_C57BL6NJ_T0043706.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11372309 11386706 + Nde1 protein_coding retained_intron MGP_C57BL6NJ_T0043707.1 MGP_C57BL6NJ_G0022957.1 mouse_genomes_project 16 11381885 11388829 + MGP_C57BL6NJ_P0043707 Nde1 protein_coding protein_coding MGP_C57BL6NJ_T0013491.1 MGP_C57BL6NJ_G0011536.1 mouse_genomes_project 16 48211889 48212489 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045487.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94778662 94781586 + Eva1c protein_coding processed_transcript MGP_C57BL6NJ_T0045488.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94778662 94862843 + MGP_C57BL6NJ_P0045488 Eva1c protein_coding protein_coding MGP_C57BL6NJ_T0045489.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94782785 94863257 + MGP_C57BL6NJ_P0045489 Eva1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045490.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94782844 94862801 + MGP_C57BL6NJ_P0045490 Eva1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045491.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94783090 94862843 + MGP_C57BL6NJ_P0045491 Eva1c protein_coding protein_coding MGP_C57BL6NJ_T0045492.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94783090 94862843 + MGP_C57BL6NJ_P0045492 Eva1c protein_coding protein_coding MGP_C57BL6NJ_T0045493.1 MGP_C57BL6NJ_G0023447.1 mouse_genomes_project 16 94799091 94846522 + MGP_C57BL6NJ_P0045493 Eva1c protein_coding protein_coding MGP_C57BL6NJ_T0003819.1 MGP_C57BL6NJ_G0003446.1 mouse_genomes_project 16 32698539 32717813 - Gm15658 antisense antisense MGP_C57BL6NJ_T0045376.1 MGP_C57BL6NJ_G0023390.1 mouse_genomes_project 16 89230959 89240246 - MGP_C57BL6NJ_P0045376 Adamts1 protein_coding protein_coding MGP_C57BL6NJ_T0045377.1 MGP_C57BL6NJ_G0023390.1 mouse_genomes_project 16 89232608 89238614 - MGP_C57BL6NJ_P0045377 Adamts1 protein_coding protein_coding MGP_C57BL6NJ_T0045378.1 MGP_C57BL6NJ_G0023390.1 mouse_genomes_project 16 89235363 89236771 - Adamts1 protein_coding processed_transcript MGP_C57BL6NJ_T0013487.1 MGP_C57BL6NJ_G0011532.1 mouse_genomes_project 16 45215194 45219263 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013471.1 MGP_C57BL6NJ_G0011516.1 mouse_genomes_project 16 31330946 31331555 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013461.1 MGP_C57BL6NJ_G0011506.1 mouse_genomes_project 16 20148673 20149068 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098830.1 MGP_C57BL6NJ_G0036894.1 mouse_genomes_project 16 30616341 30616766 - pseudogene pseudogene MGP_C57BL6NJ_T0043496.1 MGP_C57BL6NJ_G0022906.1 mouse_genomes_project 16 3512692 4132948 + MGP_C57BL6NJ_P0043496 Rbfox1 protein_coding protein_coding MGP_C57BL6NJ_T0043497.1 MGP_C57BL6NJ_G0022906.1 mouse_genomes_project 16 3783423 4137041 + MGP_C57BL6NJ_P0043497 Rbfox1 protein_coding protein_coding MGP_C57BL6NJ_T0043498.1 MGP_C57BL6NJ_G0022906.1 mouse_genomes_project 16 3935736 4131702 + MGP_C57BL6NJ_P0043498 Rbfox1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045025.1 MGP_C57BL6NJ_G0023270.1 mouse_genomes_project 16 45515370 45528722 - MGP_C57BL6NJ_P0045025 Tagln3 protein_coding protein_coding MGP_C57BL6NJ_T0100019.1 MGP_C57BL6NJ_G0038065.1 mouse_genomes_project 16 14868809 14868876 - Gm22770 snRNA snRNA MGP_C57BL6NJ_T0099035.1 MGP_C57BL6NJ_G0037099.1 mouse_genomes_project 16 88174100 88174198 + Gm25908 rRNA rRNA MGP_C57BL6NJ_T0043994.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726131 15730955 + Trmt2a protein_coding retained_intron MGP_C57BL6NJ_T0043995.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726335 15730955 + MGP_C57BL6NJ_P0043995 Trmt2a protein_coding protein_coding MGP_C57BL6NJ_T0043996.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726335 15732225 + MGP_C57BL6NJ_P0043996 Trmt2a protein_coding protein_coding MGP_C57BL6NJ_T0043997.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726454 15730955 + Trmt2a protein_coding retained_intron MGP_C57BL6NJ_T0043998.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726461 15730961 + Trmt2a protein_coding retained_intron MGP_C57BL6NJ_T0043999.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726461 15730951 + Trmt2a protein_coding retained_intron MGP_C57BL6NJ_T0044000.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15726514 15730955 + MGP_C57BL6NJ_P0044000 Trmt2a protein_coding protein_coding MGP_C57BL6NJ_T0044001.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15727473 15730565 + MGP_C57BL6NJ_P0044001 Trmt2a protein_coding protein_coding MGP_C57BL6NJ_T0044002.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15728874 15730954 + MGP_C57BL6NJ_P0044002 Trmt2a protein_coding protein_coding MGP_C57BL6NJ_T0044003.1 MGP_C57BL6NJ_G0023021.1 mouse_genomes_project 16 15729673 15730684 + Trmt2a protein_coding retained_intron MGP_C57BL6NJ_T0043420.1 MGP_C57BL6NJ_G0022885.1 mouse_genomes_project 16 1221756 1274954 + Dnaja3 protein_coding processed_transcript MGP_C57BL6NJ_T0043425.1 MGP_C57BL6NJ_G0022885.1 mouse_genomes_project 16 1270876 1302580 + MGP_C57BL6NJ_P0043425 Dnaja3 protein_coding protein_coding MGP_C57BL6NJ_T0043426.1 MGP_C57BL6NJ_G0022885.1 mouse_genomes_project 16 1270902 1302580 + MGP_C57BL6NJ_P0043426 Dnaja3 protein_coding protein_coding MGP_C57BL6NJ_T0043427.1 MGP_C57BL6NJ_G0022885.1 mouse_genomes_project 16 1270920 1282230 + Dnaja3 protein_coding retained_intron MGP_C57BL6NJ_T0007018.1 MGP_C57BL6NJ_G0005786.1 mouse_genomes_project 16 43022915 43041421 - Gm9968 lincRNA lincRNA MGP_C57BL6NJ_T0006999.1 MGP_C57BL6NJ_G0005769.1 mouse_genomes_project 16 14620230 14626628 - Gm26635 lincRNA lincRNA MGP_C57BL6NJ_T0007019.1 MGP_C57BL6NJ_G0005787.1 mouse_genomes_project 16 43089904 43099561 - Gm15713 lincRNA lincRNA MGP_C57BL6NJ_T0044533.1 MGP_C57BL6NJ_G0023156.1 mouse_genomes_project 16 31207259 31220936 - MGP_C57BL6NJ_P0044533 Slc51a protein_coding protein_coding MGP_C57BL6NJ_T0100032.1 MGP_C57BL6NJ_G0038078.1 mouse_genomes_project 16 35330333 35330437 - Gm25465 snRNA snRNA MGP_C57BL6NJ_T0001108.1 MGP_C57BL6NJ_G0001015.1 mouse_genomes_project 16 95241090 95241891 + TEC TEC MGP_C57BL6NJ_T0044756.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139518 36152213 + Golgb1 protein_coding processed_transcript MGP_C57BL6NJ_T0044757.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139519 36154014 + MGP_C57BL6NJ_P0044757 Golgb1 protein_coding protein_coding MGP_C57BL6NJ_T0044758.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139519 36140017 + MGP_C57BL6NJ_P0044758 Golgb1 protein_coding protein_coding MGP_C57BL6NJ_T0044759.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139546 36197700 + MGP_C57BL6NJ_P0044759 Golgb1 protein_coding protein_coding MGP_C57BL6NJ_T0044760.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139580 36154016 + MGP_C57BL6NJ_P0044760 Golgb1 protein_coding protein_coding MGP_C57BL6NJ_T0044761.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36139591 36197702 + MGP_C57BL6NJ_P0044761 Golgb1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044762.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36189071 36192986 + Golgb1 protein_coding retained_intron MGP_C57BL6NJ_T0044763.1 MGP_C57BL6NJ_G0023208.1 mouse_genomes_project 16 36196014 36196688 + Golgb1 protein_coding retained_intron MGP_C57BL6NJ_T0003803.1 MGP_C57BL6NJ_G0003432.1 mouse_genomes_project 16 10513947 10536813 - antisense antisense MGP_C57BL6NJ_T0003804.1 MGP_C57BL6NJ_G0003432.1 mouse_genomes_project 16 10529038 10536809 - antisense antisense MGP_C57BL6NJ_T0044948.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44133060 44142586 + Cfap44 protein_coding retained_intron MGP_C57BL6NJ_T0044949.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44133063 44220762 + MGP_C57BL6NJ_P0044949 Cfap44 protein_coding protein_coding MGP_C57BL6NJ_T0044950.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44133086 44139652 + Cfap44 protein_coding retained_intron MGP_C57BL6NJ_T0044951.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44139078 44220428 + MGP_C57BL6NJ_P0044951 Cfap44 protein_coding protein_coding MGP_C57BL6NJ_T0044952.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44146259 44168063 + Cfap44 protein_coding retained_intron MGP_C57BL6NJ_T0044953.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44170043 44175222 + Cfap44 protein_coding processed_transcript MGP_C57BL6NJ_T0044954.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44192428 44220428 + MGP_C57BL6NJ_P0044954 Cfap44 protein_coding protein_coding MGP_C57BL6NJ_T0044955.1 MGP_C57BL6NJ_G0023252.1 mouse_genomes_project 16 44207298 44220762 + Cfap44 protein_coding retained_intron MGP_C57BL6NJ_T0010333.1 MGP_C57BL6NJ_G0008418.1 mouse_genomes_project 16 14464148 14464245 - Mir301b miRNA miRNA MGP_C57BL6NJ_T0102185.1 MGP_C57BL6NJ_G0040200.1 mouse_genomes_project 16 12689951 12690636 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0003811.1 MGP_C57BL6NJ_G0003439.1 mouse_genomes_project 16 16642025 16693681 + antisense antisense MGP_C57BL6NJ_T0044011.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15792302 15816614 - MGP_C57BL6NJ_P0044011 Tango2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044012.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15792304 15837513 - MGP_C57BL6NJ_P0044012 Tango2 protein_coding protein_coding MGP_C57BL6NJ_T0044013.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15792700 15795623 - Tango2 protein_coding retained_intron MGP_C57BL6NJ_T0044014.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15799464 15802931 - Tango2 protein_coding processed_transcript MGP_C57BL6NJ_T0044015.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15802257 15804956 - Tango2 protein_coding retained_intron MGP_C57BL6NJ_T0044016.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15802365 15841449 - MGP_C57BL6NJ_P0044016 Tango2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044017.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15802373 15837488 - MGP_C57BL6NJ_P0044017 Tango2 protein_coding protein_coding MGP_C57BL6NJ_T0044018.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15803902 15816615 - Tango2 protein_coding retained_intron MGP_C57BL6NJ_T0044019.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15807990 15816615 - Tango2 protein_coding retained_intron MGP_C57BL6NJ_T0044020.1 MGP_C57BL6NJ_G0023023.1 mouse_genomes_project 16 15813014 15841429 - Tango2 protein_coding retained_intron MGP_C57BL6NJ_T0010358.1 MGP_C57BL6NJ_G0008443.1 mouse_genomes_project 16 43727794 43727920 + Mir3470b miRNA miRNA MGP_C57BL6NJ_T0045530.1 MGP_C57BL6NJ_G0023457.1 mouse_genomes_project 16 95405353 95426845 + MGP_C57BL6NJ_P0045530 Il10rb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045531.1 MGP_C57BL6NJ_G0023457.1 mouse_genomes_project 16 95405424 95426857 + MGP_C57BL6NJ_P0045531 Il10rb protein_coding protein_coding MGP_C57BL6NJ_T0045532.1 MGP_C57BL6NJ_G0023457.1 mouse_genomes_project 16 95405509 95421334 + Il10rb protein_coding retained_intron MGP_C57BL6NJ_T0045533.1 MGP_C57BL6NJ_G0023457.1 mouse_genomes_project 16 95405509 95425947 + MGP_C57BL6NJ_P0045533 Il10rb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045534.1 MGP_C57BL6NJ_G0023457.1 mouse_genomes_project 16 95405633 95413688 + Il10rb protein_coding processed_transcript MGP_C57BL6NJ_T0044743.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36050777 36139382 - Eaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0044744.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36050778 36139382 - Eaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0044745.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36050779 36067559 - MGP_C57BL6NJ_P0044745 Eaf2 protein_coding protein_coding MGP_C57BL6NJ_T0044746.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36050858 36088926 - Eaf2 protein_coding processed_transcript MGP_C57BL6NJ_T0044747.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36050913 36088871 - MGP_C57BL6NJ_P0044747 Eaf2 protein_coding protein_coding MGP_C57BL6NJ_T0044748.1 MGP_C57BL6NJ_G0023206.1 mouse_genomes_project 16 36083258 36139193 - Eaf2 protein_coding retained_intron MGP_C57BL6NJ_T0045587.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754237 95897803 + MGP_C57BL6NJ_P0045587 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045588.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754309 95942362 + MGP_C57BL6NJ_P0045588 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045589.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754309 95948971 + MGP_C57BL6NJ_P0045589 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045590.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754309 95899244 + MGP_C57BL6NJ_P0045590 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045591.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754326 95859128 + MGP_C57BL6NJ_P0045591 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045592.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754327 95899248 + MGP_C57BL6NJ_P0045592 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045593.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754329 95899246 + MGP_C57BL6NJ_P0045593 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045594.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754422 95808379 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045595.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754527 95819849 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045596.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95754548 95898090 + MGP_C57BL6NJ_P0045596 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045597.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95808161 95845306 + MGP_C57BL6NJ_P0045597 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045598.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95810105 95855085 + Itsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0045599.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95831304 95843600 + Itsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0045600.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95831318 95838974 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045601.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95843508 95854672 + Itsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0045602.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95854311 95855048 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045603.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95867232 95878850 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045604.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95867321 95880821 + MGP_C57BL6NJ_P0045604 Itsn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045605.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95870161 95880821 + MGP_C57BL6NJ_P0045605 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045606.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95881371 95890884 + MGP_C57BL6NJ_P0045606 Itsn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045607.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95889586 95898940 + Itsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045608.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95905160 95922274 + Itsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0045609.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95914900 95937582 + MGP_C57BL6NJ_P0045609 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045610.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95927832 95937605 + MGP_C57BL6NJ_P0045610 Itsn1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045611.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95927834 95937582 + MGP_C57BL6NJ_P0045611 Itsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045612.1 MGP_C57BL6NJ_G0023467.1 mouse_genomes_project 16 95940332 95943534 + Itsn1 protein_coding processed_transcript MGP_C57BL6NJ_T0010378.1 MGP_C57BL6NJ_G0008463.1 mouse_genomes_project 16 95538947 95539049 - Mir6367 miRNA miRNA MGP_C57BL6NJ_T0100061.1 MGP_C57BL6NJ_G0038107.1 mouse_genomes_project 16 95131607 95131707 - Gm25895 snRNA snRNA MGP_C57BL6NJ_T0044449.1 MGP_C57BL6NJ_G0023134.1 mouse_genomes_project 16 29844322 29868803 - MGP_C57BL6NJ_P0044449 Ppp1r2 protein_coding protein_coding MGP_C57BL6NJ_T0044450.1 MGP_C57BL6NJ_G0023134.1 mouse_genomes_project 16 29850098 29868825 - MGP_C57BL6NJ_P0044450 Ppp1r2 protein_coding protein_coding MGP_C57BL6NJ_T0044710.1 MGP_C57BL6NJ_G0023196.1 mouse_genomes_project 16 35365696 35386424 + MGP_C57BL6NJ_P0044710 Gm5416 protein_coding protein_coding MGP_C57BL6NJ_T0045240.1 MGP_C57BL6NJ_G0023344.1 mouse_genomes_project 16 60212289 60213207 - MGP_C57BL6NJ_P0045240 Olfr205 protein_coding protein_coding MGP_C57BL6NJ_T0010373.1 MGP_C57BL6NJ_G0008458.1 mouse_genomes_project 16 80217976 80218070 + Mirlet7c-1 miRNA miRNA MGP_C57BL6NJ_T0044344.1 MGP_C57BL6NJ_G0023104.1 mouse_genomes_project 16 22105575 22130646 - MGP_C57BL6NJ_P0044344 Bcl6 protein_coding protein_coding MGP_C57BL6NJ_T0044345.1 MGP_C57BL6NJ_G0023104.1 mouse_genomes_project 16 22108217 22112904 - Bcl6 protein_coding retained_intron MGP_C57BL6NJ_T0045651.1 MGP_C57BL6NJ_G0023480.1 mouse_genomes_project 16 97923368 98026113 + MGP_C57BL6NJ_P0045651 Dopey2 protein_coding protein_coding MGP_C57BL6NJ_T0045384.1 MGP_C57BL6NJ_G0023394.1 mouse_genomes_project 16 91016623 91023790 - MGP_C57BL6NJ_P0045384 Rwdd2b protein_coding protein_coding MGP_C57BL6NJ_T0045385.1 MGP_C57BL6NJ_G0023394.1 mouse_genomes_project 16 91019912 91023790 - Rwdd2b protein_coding processed_transcript MGP_C57BL6NJ_T0013450.1 MGP_C57BL6NJ_G0011495.1 mouse_genomes_project 16 14411943 14412636 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044284.1 MGP_C57BL6NJ_G0023085.1 mouse_genomes_project 16 20313956 20381744 - MGP_C57BL6NJ_P0044284 Etv5 protein_coding protein_coding MGP_C57BL6NJ_T0044285.1 MGP_C57BL6NJ_G0023085.1 mouse_genomes_project 16 20317769 20338527 - MGP_C57BL6NJ_P0044285 Etv5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044286.1 MGP_C57BL6NJ_G0023085.1 mouse_genomes_project 16 20338561 20381641 - Etv5 protein_coding processed_transcript MGP_C57BL6NJ_T0044287.1 MGP_C57BL6NJ_G0023085.1 mouse_genomes_project 16 20351255 20381595 - MGP_C57BL6NJ_P0044287 Etv5 protein_coding protein_coding MGP_C57BL6NJ_T0044916.1 MGP_C57BL6NJ_G0023246.1 mouse_genomes_project 16 43691550 43726982 - MGP_C57BL6NJ_P0044916 Gramd1c protein_coding protein_coding MGP_C57BL6NJ_T0044917.1 MGP_C57BL6NJ_G0023246.1 mouse_genomes_project 16 43691555 43743025 - MGP_C57BL6NJ_P0044917 Gramd1c protein_coding protein_coding MGP_C57BL6NJ_T0044918.1 MGP_C57BL6NJ_G0023246.1 mouse_genomes_project 16 43691555 43730379 - MGP_C57BL6NJ_P0044918 Gramd1c protein_coding protein_coding MGP_C57BL6NJ_T0044919.1 MGP_C57BL6NJ_G0023246.1 mouse_genomes_project 16 43699287 43746103 - MGP_C57BL6NJ_P0044919 Gramd1c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043826.1 MGP_C57BL6NJ_G0022984.1 mouse_genomes_project 16 14451447 14464855 - MGP_C57BL6NJ_P0043826 2610318N02Rik protein_coding protein_coding MGP_C57BL6NJ_T0045445.1 MGP_C57BL6NJ_G0023428.1 mouse_genomes_project 16 92815580 92816100 + MGP_C57BL6NJ_P0045445 Krtap6-3 protein_coding protein_coding MGP_C57BL6NJ_T0045446.1 MGP_C57BL6NJ_G0023428.1 mouse_genomes_project 16 92815656 92816100 + MGP_C57BL6NJ_P0045446 Krtap6-3 protein_coding protein_coding MGP_C57BL6NJ_T0044930.1 MGP_C57BL6NJ_G0023249.1 mouse_genomes_project 16 43894858 43943177 + protein_coding retained_intron MGP_C57BL6NJ_T0044931.1 MGP_C57BL6NJ_G0023249.1 mouse_genomes_project 16 43894858 43940643 + MGP_C57BL6NJ_P0044931 protein_coding protein_coding MGP_C57BL6NJ_T0044932.1 MGP_C57BL6NJ_G0023249.1 mouse_genomes_project 16 43922903 43949533 + MGP_C57BL6NJ_P0044932 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0017953.1 MGP_C57BL6NJ_G0015706.1 mouse_genomes_project 16 18194217 18200835 - Gm16618 processed_transcript processed_transcript MGP_C57BL6NJ_T0044180.1 MGP_C57BL6NJ_G0023064.1 mouse_genomes_project 16 18290182 18295500 - MGP_C57BL6NJ_P0044180 Alg3 protein_coding protein_coding MGP_C57BL6NJ_T0044181.1 MGP_C57BL6NJ_G0023064.1 mouse_genomes_project 16 18290195 18295470 - MGP_C57BL6NJ_P0044181 Alg3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044182.1 MGP_C57BL6NJ_G0023064.1 mouse_genomes_project 16 18290203 18295463 - MGP_C57BL6NJ_P0044182 Alg3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044183.1 MGP_C57BL6NJ_G0023064.1 mouse_genomes_project 16 18290204 18295479 - MGP_C57BL6NJ_P0044183 Alg3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044184.1 MGP_C57BL6NJ_G0023064.1 mouse_genomes_project 16 18293473 18295484 - Alg3 protein_coding processed_transcript MGP_C57BL6NJ_T0011676.1 MGP_C57BL6NJ_G0009761.1 mouse_genomes_project 16 70735285 70735571 + Gm23591 misc_RNA misc_RNA MGP_C57BL6NJ_T0100059.1 MGP_C57BL6NJ_G0038105.1 mouse_genomes_project 16 92299632 92299716 - Gm23587 snRNA snRNA MGP_C57BL6NJ_T0045305.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76223876 76765957 - MGP_C57BL6NJ_P0045305 Robo2 protein_coding protein_coding MGP_C57BL6NJ_T0045306.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76225925 76766260 - MGP_C57BL6NJ_P0045306 Robo2 protein_coding protein_coding MGP_C57BL6NJ_T0045307.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76226234 76231456 - Robo2 protein_coding retained_intron MGP_C57BL6NJ_T0045308.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76227396 76404698 - MGP_C57BL6NJ_P0045308 Robo2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045309.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76228600 76239533 - Robo2 protein_coding processed_transcript MGP_C57BL6NJ_T0045310.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76252966 76766753 - MGP_C57BL6NJ_P0045310 Robo2 protein_coding protein_coding MGP_C57BL6NJ_T0045311.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76253221 76268276 - Robo2 protein_coding retained_intron MGP_C57BL6NJ_T0045312.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76319657 76364089 - Robo2 protein_coding processed_transcript MGP_C57BL6NJ_T0045313.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76380223 76766405 - Robo2 protein_coding retained_intron MGP_C57BL6NJ_T0045314.1 MGP_C57BL6NJ_G0023369.1 mouse_genomes_project 16 76706983 76766793 - Robo2 protein_coding retained_intron MGP_C57BL6NJ_T0017954.1 MGP_C57BL6NJ_G0015707.1 mouse_genomes_project 16 20495157 20497754 + Gm15651 processed_transcript processed_transcript MGP_C57BL6NJ_T0044969.1 MGP_C57BL6NJ_G0023257.1 mouse_genomes_project 16 44572470 44600715 + MGP_C57BL6NJ_P0044969 Cd200r4 protein_coding protein_coding MGP_C57BL6NJ_T0044970.1 MGP_C57BL6NJ_G0023257.1 mouse_genomes_project 16 44572493 44600714 + MGP_C57BL6NJ_P0044970 Cd200r4 protein_coding protein_coding MGP_C57BL6NJ_T0044971.1 MGP_C57BL6NJ_G0023257.1 mouse_genomes_project 16 44582953 44600731 + MGP_C57BL6NJ_P0044971 Cd200r4 protein_coding protein_coding MGP_C57BL6NJ_T0045111.1 MGP_C57BL6NJ_G0023297.1 mouse_genomes_project 16 56533390 56575510 - MGP_C57BL6NJ_P0045111 Cep97 protein_coding protein_coding MGP_C57BL6NJ_T0045112.1 MGP_C57BL6NJ_G0023297.1 mouse_genomes_project 16 56562384 56575512 - MGP_C57BL6NJ_P0045112 Cep97 protein_coding protein_coding MGP_C57BL6NJ_T0045113.1 MGP_C57BL6NJ_G0023297.1 mouse_genomes_project 16 56562391 56575569 - MGP_C57BL6NJ_P0045113 Cep97 protein_coding protein_coding MGP_C57BL6NJ_T0045114.1 MGP_C57BL6NJ_G0023297.1 mouse_genomes_project 16 56562579 56575548 - MGP_C57BL6NJ_P0045114 Cep97 protein_coding protein_coding MGP_C57BL6NJ_T0044343.1 MGP_C57BL6NJ_G0023103.1 mouse_genomes_project 16 22064434 22071724 - MGP_C57BL6NJ_P0044343 Rtp2 protein_coding protein_coding MGP_C57BL6NJ_T0102891.1 MGP_C57BL6NJ_G0040685.1 mouse_genomes_project 16 59881635 59882439 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102883.1 MGP_C57BL6NJ_G0040677.1 mouse_genomes_project 16 115239 116179 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0043542.1 MGP_C57BL6NJ_G0022917.1 mouse_genomes_project 16 7096919 7101317 + MGP_C57BL6NJ_P0043542 Rpl39l protein_coding protein_coding MGP_C57BL6NJ_T0043543.1 MGP_C57BL6NJ_G0022917.1 mouse_genomes_project 16 7096921 7101598 + MGP_C57BL6NJ_P0043543 Rpl39l protein_coding protein_coding MGP_C57BL6NJ_T0043728.1 MGP_C57BL6NJ_G0022964.1 mouse_genomes_project 16 12158391 12176150 + MGP_C57BL6NJ_P0043728 Efcab1 protein_coding protein_coding MGP_C57BL6NJ_T0045222.1 MGP_C57BL6NJ_G0023331.1 mouse_genomes_project 16 59831779 59832784 - MGP_C57BL6NJ_P0045222 Olfr186 protein_coding protein_coding MGP_C57BL6NJ_T0045223.1 MGP_C57BL6NJ_G0023331.1 mouse_genomes_project 16 59832376 59835996 - MGP_C57BL6NJ_P0045223 Olfr186 protein_coding protein_coding MGP_C57BL6NJ_T0100025.1 MGP_C57BL6NJ_G0038071.1 mouse_genomes_project 16 21541641 21541712 + Gm23066 snRNA snRNA MGP_C57BL6NJ_T0007006.1 MGP_C57BL6NJ_G0005774.1 mouse_genomes_project 16 19769144 19770000 - 2610020F03Rik lincRNA lincRNA MGP_C57BL6NJ_T0045110.1 MGP_C57BL6NJ_G0023296.1 mouse_genomes_project 16 56466285 56526652 - MGP_C57BL6NJ_P0045110 Nxpe3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043761.1 MGP_C57BL6NJ_G0022974.1 mouse_genomes_project 16 13959741 13960883 - MGP_C57BL6NJ_P0043761 Olfr19 protein_coding protein_coding MGP_C57BL6NJ_T0043762.1 MGP_C57BL6NJ_G0022974.1 mouse_genomes_project 16 13960200 13963271 - MGP_C57BL6NJ_P0043762 Olfr19 protein_coding protein_coding MGP_C57BL6NJ_T0044096.1 MGP_C57BL6NJ_G0023039.1 mouse_genomes_project 16 16883967 16885062 - MGP_C57BL6NJ_P0044096 Olfr164 protein_coding protein_coding MGP_C57BL6NJ_T0044687.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35027352 35070292 + MGP_C57BL6NJ_P0044687 Parp9 protein_coding protein_coding MGP_C57BL6NJ_T0044688.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35027370 35035787 + Parp9 protein_coding retained_intron MGP_C57BL6NJ_T0044689.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35027401 35041343 + MGP_C57BL6NJ_P0044689 Parp9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044690.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35033014 35041578 + Parp9 protein_coding processed_transcript MGP_C57BL6NJ_T0044691.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35033102 35074295 + MGP_C57BL6NJ_P0044691 Parp9 protein_coding protein_coding MGP_C57BL6NJ_T0044692.1 MGP_C57BL6NJ_G0023190.1 mouse_genomes_project 16 35041940 35050494 + MGP_C57BL6NJ_P0044692 Parp9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045471.1 MGP_C57BL6NJ_G0023441.1 mouse_genomes_project 16 94102667 94108248 + MGP_C57BL6NJ_P0045471 Sod1 protein_coding protein_coding MGP_C57BL6NJ_T0044671.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34580677 34704915 + Sema5b protein_coding retained_intron MGP_C57BL6NJ_T0044672.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34580894 34726114 + MGP_C57BL6NJ_P0044672 Sema5b protein_coding protein_coding MGP_C57BL6NJ_T0044673.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34581103 34726114 + MGP_C57BL6NJ_P0044673 Sema5b protein_coding protein_coding MGP_C57BL6NJ_T0044674.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34720164 34720557 + Sema5b protein_coding retained_intron MGP_C57BL6NJ_T0044675.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34720654 34726585 + MGP_C57BL6NJ_P0044675 Sema5b protein_coding protein_coding MGP_C57BL6NJ_T0044676.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34721504 34722350 + Sema5b protein_coding retained_intron MGP_C57BL6NJ_T0044677.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34723167 34725177 + MGP_C57BL6NJ_P0044677 Sema5b protein_coding protein_coding MGP_C57BL6NJ_T0044678.1 MGP_C57BL6NJ_G0023185.1 mouse_genomes_project 16 34724333 34725317 + Sema5b protein_coding retained_intron MGP_C57BL6NJ_T0044060.1 MGP_C57BL6NJ_G0023028.1 mouse_genomes_project 16 16016477 16019235 + MGP_C57BL6NJ_P0044060 Gm16314 protein_coding protein_coding MGP_C57BL6NJ_T0044558.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31506205 31521631 + MGP_C57BL6NJ_P0044558 protein_coding protein_coding MGP_C57BL6NJ_T0044559.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31506205 31559595 + MGP_C57BL6NJ_P0044559 protein_coding protein_coding MGP_C57BL6NJ_T0044560.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31506516 31559430 + protein_coding processed_transcript MGP_C57BL6NJ_T0044561.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31532728 31559595 + MGP_C57BL6NJ_P0044561 protein_coding protein_coding MGP_C57BL6NJ_T0044562.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31552675 31559588 + protein_coding processed_transcript MGP_C57BL6NJ_T0044563.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31552754 31553353 + protein_coding processed_transcript MGP_C57BL6NJ_T0044565.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31553929 31555324 + protein_coding retained_intron MGP_C57BL6NJ_T0044566.1 MGP_C57BL6NJ_G0023160.1 mouse_genomes_project 16 31555014 31555527 + protein_coding retained_intron MGP_C57BL6NJ_T0044329.1 MGP_C57BL6NJ_G0023096.1 mouse_genomes_project 16 21203018 21215045 + MGP_C57BL6NJ_P0044329 Adipoq protein_coding protein_coding MGP_C57BL6NJ_T0044330.1 MGP_C57BL6NJ_G0023096.1 mouse_genomes_project 16 21203128 21214309 + MGP_C57BL6NJ_P0044330 Adipoq protein_coding protein_coding MGP_C57BL6NJ_T0045434.1 MGP_C57BL6NJ_G0023417.1 mouse_genomes_project 16 92588848 92589152 - MGP_C57BL6NJ_P0045434 Krtap19-4 protein_coding protein_coding MGP_C57BL6NJ_T0045623.1 MGP_C57BL6NJ_G0023470.1 mouse_genomes_project 16 96345813 96351554 + MGP_C57BL6NJ_P0045623 Kcne2 protein_coding protein_coding MGP_C57BL6NJ_T0045624.1 MGP_C57BL6NJ_G0023470.1 mouse_genomes_project 16 96349040 96351554 + MGP_C57BL6NJ_P0045624 Kcne2 protein_coding protein_coding MGP_C57BL6NJ_T0043456.1 MGP_C57BL6NJ_G0022894.1 mouse_genomes_project 16 1576382 1586422 + MGP_C57BL6NJ_P0043456 4930451G09Rik protein_coding protein_coding MGP_C57BL6NJ_T0100060.1 MGP_C57BL6NJ_G0038106.1 mouse_genomes_project 16 93247780 93247885 - Gm23655 snRNA snRNA MGP_C57BL6NJ_T0044660.1 MGP_C57BL6NJ_G0023179.1 mouse_genomes_project 16 33678506 33714711 + MGP_C57BL6NJ_P0044660 Ccdc14 protein_coding protein_coding MGP_C57BL6NJ_T0044478.1 MGP_C57BL6NJ_G0023139.1 mouse_genomes_project 16 30587886 30614364 + MGP_C57BL6NJ_P0044478 Pigz protein_coding protein_coding MGP_C57BL6NJ_T0044479.1 MGP_C57BL6NJ_G0023139.1 mouse_genomes_project 16 30587978 30612666 + Pigz protein_coding processed_transcript MGP_C57BL6NJ_T0044480.1 MGP_C57BL6NJ_G0023139.1 mouse_genomes_project 16 30588017 30610941 + Pigz protein_coding processed_transcript MGP_C57BL6NJ_T0044481.1 MGP_C57BL6NJ_G0023139.1 mouse_genomes_project 16 30610333 30610937 + Pigz protein_coding processed_transcript MGP_C57BL6NJ_T0044123.1 MGP_C57BL6NJ_G0023055.1 mouse_genomes_project 16 17877170 17885241 - MGP_C57BL6NJ_P0044123 Map6d1 protein_coding protein_coding MGP_C57BL6NJ_T0011670.1 MGP_C57BL6NJ_G0009755.1 mouse_genomes_project 16 35734875 35735193 - Gm25902 misc_RNA misc_RNA MGP_C57BL6NJ_T0045146.1 MGP_C57BL6NJ_G0023304.1 mouse_genomes_project 16 57174691 57411099 + MGP_C57BL6NJ_P0045146 Abi3bp protein_coding protein_coding MGP_C57BL6NJ_T0045147.1 MGP_C57BL6NJ_G0023304.1 mouse_genomes_project 16 57174691 57411099 + MGP_C57BL6NJ_P0045147 Abi3bp protein_coding protein_coding MGP_C57BL6NJ_T0045148.1 MGP_C57BL6NJ_G0023304.1 mouse_genomes_project 16 57174691 57411099 + MGP_C57BL6NJ_P0045148 Abi3bp protein_coding protein_coding MGP_C57BL6NJ_T0045149.1 MGP_C57BL6NJ_G0023304.1 mouse_genomes_project 16 57174691 57411099 + MGP_C57BL6NJ_P0045149 Abi3bp protein_coding protein_coding MGP_C57BL6NJ_T0045150.1 MGP_C57BL6NJ_G0023304.1 mouse_genomes_project 16 57174759 57411109 + MGP_C57BL6NJ_P0045150 Abi3bp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043723.1 MGP_C57BL6NJ_G0022961.1 mouse_genomes_project 16 11724370 11731251 + MGP_C57BL6NJ_P0043723 Gm1758 protein_coding protein_coding MGP_C57BL6NJ_T0043565.1 MGP_C57BL6NJ_G0022924.1 mouse_genomes_project 16 7458587 7502848 - MGP_C57BL6NJ_P0043565 Dexi protein_coding protein_coding MGP_C57BL6NJ_T0043566.1 MGP_C57BL6NJ_G0022924.1 mouse_genomes_project 16 7490036 7491639 - Dexi protein_coding processed_transcript MGP_C57BL6NJ_T0043567.1 MGP_C57BL6NJ_G0022924.1 mouse_genomes_project 16 7490036 7502848 - MGP_C57BL6NJ_P0043567 Dexi protein_coding protein_coding MGP_C57BL6NJ_T0001098.1 MGP_C57BL6NJ_G0001005.1 mouse_genomes_project 16 80026251 80028821 - TEC TEC MGP_C57BL6NJ_T0013506.1 MGP_C57BL6NJ_G0011551.1 mouse_genomes_project 16 78236386 78237299 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045199.1 MGP_C57BL6NJ_G0023321.1 mouse_genomes_project 16 59512290 59513580 - MGP_C57BL6NJ_P0045199 Gpr15 protein_coding protein_coding MGP_C57BL6NJ_T0043343.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 375039 390121 - 1700037C18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0043344.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 375041 389225 - MGP_C57BL6NJ_P0043344 1700037C18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043346.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 384163 390157 - MGP_C57BL6NJ_P0043346 1700037C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0043347.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 387265 389170 - MGP_C57BL6NJ_P0043347 1700037C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0043348.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 387725 389119 - MGP_C57BL6NJ_P0043348 1700037C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0043349.1 MGP_C57BL6NJ_G0022870.1 mouse_genomes_project 16 388480 390091 - MGP_C57BL6NJ_P0043349 1700037C18Rik protein_coding protein_coding MGP_C57BL6NJ_T0045672.1 MGP_C57BL6NJ_G0023484.1 mouse_genomes_project 16 98325950 98376681 + MGP_C57BL6NJ_P0045672 Sim2 protein_coding protein_coding MGP_C57BL6NJ_T0010381.1 MGP_C57BL6NJ_G0008466.1 mouse_genomes_project 16 97507688 97507785 + Mir802 miRNA miRNA MGP_C57BL6NJ_T0043520.1 MGP_C57BL6NJ_G0022913.1 mouse_genomes_project 16 5498796 5501932 + MGP_C57BL6NJ_P0043520 Gm43786 protein_coding protein_coding MGP_C57BL6NJ_T0043521.1 MGP_C57BL6NJ_G0022913.1 mouse_genomes_project 16 5500856 5501938 + Gm43786 protein_coding processed_transcript MGP_C57BL6NJ_T0043536.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6456749 6911163 - MGP_C57BL6NJ_P0043536 Grin2a protein_coding protein_coding MGP_C57BL6NJ_T0043537.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6467486 6910822 - MGP_C57BL6NJ_P0043537 Grin2a protein_coding protein_coding MGP_C57BL6NJ_T0043538.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6467486 6908772 - MGP_C57BL6NJ_P0043538 Grin2a protein_coding protein_coding MGP_C57BL6NJ_T0043539.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6659949 6695646 - Grin2a protein_coding processed_transcript MGP_C57BL6NJ_T0043540.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6907893 6911800 - Grin2a protein_coding retained_intron MGP_C57BL6NJ_T0043541.1 MGP_C57BL6NJ_G0022916.1 mouse_genomes_project 16 6907893 6910510 - Grin2a protein_coding retained_intron MGP_C57BL6NJ_T0006992.1 MGP_C57BL6NJ_G0005763.1 mouse_genomes_project 16 8013010 8020800 + Gm4262 lincRNA lincRNA MGP_C57BL6NJ_T0007023.1 MGP_C57BL6NJ_G0005790.1 mouse_genomes_project 16 49935290 49939632 + Gm16619 lincRNA lincRNA MGP_C57BL6NJ_T0010372.1 MGP_C57BL6NJ_G0008457.1 mouse_genomes_project 16 80217255 80217320 + Mir99a miRNA miRNA MGP_C57BL6NJ_T0043729.1 MGP_C57BL6NJ_G0022965.1 mouse_genomes_project 16 12778458 12820302 - MGP_C57BL6NJ_P0043729 Ube2v2 protein_coding protein_coding MGP_C57BL6NJ_T0043730.1 MGP_C57BL6NJ_G0022965.1 mouse_genomes_project 16 12781284 12820285 - MGP_C57BL6NJ_P0043730 Ube2v2 protein_coding protein_coding MGP_C57BL6NJ_T0043731.1 MGP_C57BL6NJ_G0022965.1 mouse_genomes_project 16 12781660 12820250 - MGP_C57BL6NJ_P0043731 Ube2v2 protein_coding protein_coding MGP_C57BL6NJ_T0043732.1 MGP_C57BL6NJ_G0022965.1 mouse_genomes_project 16 12782088 12820268 - MGP_C57BL6NJ_P0043732 Ube2v2 protein_coding protein_coding MGP_C57BL6NJ_T0045438.1 MGP_C57BL6NJ_G0023421.1 mouse_genomes_project 16 92666682 92667283 - MGP_C57BL6NJ_P0045438 Krtap16-3 protein_coding protein_coding MGP_C57BL6NJ_T0007050.1 MGP_C57BL6NJ_G0005806.1 mouse_genomes_project 16 98006565 98009304 - 2310043M15Rik lincRNA lincRNA MGP_C57BL6NJ_T0007024.1 MGP_C57BL6NJ_G0005791.1 mouse_genomes_project 16 50707431 50742444 + G730013B05Rik lincRNA lincRNA MGP_C57BL6NJ_T0013466.1 MGP_C57BL6NJ_G0011511.1 mouse_genomes_project 16 25643552 25644386 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044826.1 MGP_C57BL6NJ_G0023226.1 mouse_genomes_project 16 37726940 37742949 + MGP_C57BL6NJ_P0044826 Popdc2 protein_coding protein_coding MGP_C57BL6NJ_T0044827.1 MGP_C57BL6NJ_G0023226.1 mouse_genomes_project 16 37726976 37742949 + MGP_C57BL6NJ_P0044827 Popdc2 protein_coding protein_coding MGP_C57BL6NJ_T0044828.1 MGP_C57BL6NJ_G0023226.1 mouse_genomes_project 16 37733541 37738930 + Popdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0044829.1 MGP_C57BL6NJ_G0023226.1 mouse_genomes_project 16 37734161 37742496 + Popdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0044830.1 MGP_C57BL6NJ_G0023226.1 mouse_genomes_project 16 37736733 37738873 + Popdc2 protein_coding processed_transcript MGP_C57BL6NJ_T0045212.1 MGP_C57BL6NJ_G0023327.1 mouse_genomes_project 16 59690484 59691444 - MGP_C57BL6NJ_P0045212 Olfr178 protein_coding protein_coding MGP_C57BL6NJ_T0045213.1 MGP_C57BL6NJ_G0023327.1 mouse_genomes_project 16 59690484 59693284 - MGP_C57BL6NJ_P0045213 Olfr178 protein_coding protein_coding MGP_C57BL6NJ_T0013484.1 MGP_C57BL6NJ_G0011529.1 mouse_genomes_project 16 42987972 42988507 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045001.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45169443 45196781 - MGP_C57BL6NJ_P0045001 Cd200 protein_coding protein_coding MGP_C57BL6NJ_T0045002.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45169491 45196603 - MGP_C57BL6NJ_P0045002 Cd200 protein_coding protein_coding MGP_C57BL6NJ_T0045003.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45170592 45196700 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0045004.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45179557 45188506 - MGP_C57BL6NJ_P0045004 Cd200 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045005.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45179557 45196641 - MGP_C57BL6NJ_P0045005 Cd200 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045006.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45181910 45196751 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0045007.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45182138 45196769 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0045008.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45184233 45196745 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0045009.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45187764 45196592 - Cd200 protein_coding retained_intron MGP_C57BL6NJ_T0045010.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45188486 45196735 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0045011.1 MGP_C57BL6NJ_G0023264.1 mouse_genomes_project 16 45194933 45196746 - Cd200 protein_coding processed_transcript MGP_C57BL6NJ_T0010359.1 MGP_C57BL6NJ_G0008444.1 mouse_genomes_project 16 44297556 44297640 - Mir3081 miRNA miRNA MGP_C57BL6NJ_T0013503.1 MGP_C57BL6NJ_G0011548.1 mouse_genomes_project 16 69240701 69241223 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013448.1 MGP_C57BL6NJ_G0011493.1 mouse_genomes_project 16 13823192 13823612 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099028.1 MGP_C57BL6NJ_G0037092.1 mouse_genomes_project 16 13272807 13272917 - n-R5s31 rRNA rRNA MGP_C57BL6NJ_T0010368.1 MGP_C57BL6NJ_G0008453.1 mouse_genomes_project 16 66881619 66881729 + Gm23659 miRNA miRNA MGP_C57BL6NJ_T0043989.1 MGP_C57BL6NJ_G0023018.1 mouse_genomes_project 16 15692298 15693442 + MGP_C57BL6NJ_P0043989 Ccdc188 protein_coding protein_coding MGP_C57BL6NJ_T0045242.1 MGP_C57BL6NJ_G0023346.1 mouse_genomes_project 16 60243819 60244737 - MGP_C57BL6NJ_P0045242 Olfr209 protein_coding protein_coding MGP_C57BL6NJ_T0099353.1 MGP_C57BL6NJ_G0037412.1 mouse_genomes_project 16 24283355 24293252 - AU015336 sense_intronic sense_intronic MGP_C57BL6NJ_T0043476.1 MGP_C57BL6NJ_G0022898.1 mouse_genomes_project 16 1627150 1663132 - MGP_C57BL6NJ_P0043476 Glyr1 protein_coding protein_coding MGP_C57BL6NJ_T0043477.1 MGP_C57BL6NJ_G0022898.1 mouse_genomes_project 16 1627150 1663132 - MGP_C57BL6NJ_P0043477 Glyr1 protein_coding protein_coding MGP_C57BL6NJ_T0000021.1 MGP_C57BL6NJ_G0000014.1 mouse_genomes_project 16 16779666 16780124 - MGP_C57BL6NJ_P0000021 Iglc2 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0000022.1 MGP_C57BL6NJ_G0000014.1 mouse_genomes_project 16 16779671 16781622 - MGP_C57BL6NJ_P0000022 Iglc2 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0043481.1 MGP_C57BL6NJ_G0022902.1 mouse_genomes_project 16 1816582 1825981 - MGP_C57BL6NJ_P0043481 Nagpa protein_coding protein_coding MGP_C57BL6NJ_T0043482.1 MGP_C57BL6NJ_G0022902.1 mouse_genomes_project 16 1816582 1825971 - MGP_C57BL6NJ_P0043482 Nagpa protein_coding protein_coding MGP_C57BL6NJ_T0043483.1 MGP_C57BL6NJ_G0022902.1 mouse_genomes_project 16 1816680 1819734 - Nagpa protein_coding processed_transcript MGP_C57BL6NJ_T0043484.1 MGP_C57BL6NJ_G0022902.1 mouse_genomes_project 16 1821781 1825446 - Nagpa protein_coding retained_intron MGP_C57BL6NJ_T0000192.1 MGP_C57BL6NJ_G0000143.1 mouse_genomes_project 16 16855445 16856283 - MGP_C57BL6NJ_P0000192 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0010383.1 MGP_C57BL6NJ_G0008468.1 mouse_genomes_project 16 99209600 99209670 + Gm22745 miRNA miRNA MGP_C57BL6NJ_T0045379.1 MGP_C57BL6NJ_G0023391.1 mouse_genomes_project 16 89302261 89353313 - MGP_C57BL6NJ_P0045379 Adamts5 protein_coding protein_coding MGP_C57BL6NJ_T0100023.1 MGP_C57BL6NJ_G0038069.1 mouse_genomes_project 16 20135601 20135709 + Gm25810 snRNA snRNA MGP_C57BL6NJ_T0043752.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13695654 13883246 - MGP_C57BL6NJ_P0043752 Fgd4 protein_coding protein_coding MGP_C57BL6NJ_T0043753.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13710248 13842633 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0043754.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13710248 13781279 - MGP_C57BL6NJ_P0043754 Fgd4 protein_coding protein_coding MGP_C57BL6NJ_T0043755.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13726573 13842798 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0043756.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13728165 13842798 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0043757.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13737550 13883867 - MGP_C57BL6NJ_P0043757 Fgd4 protein_coding protein_coding MGP_C57BL6NJ_T0043758.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13746953 13842577 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0043759.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13757127 13883357 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0043760.1 MGP_C57BL6NJ_G0022973.1 mouse_genomes_project 16 13758106 13806311 - Fgd4 protein_coding retained_intron MGP_C57BL6NJ_T0044819.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37711688 37717508 + MGP_C57BL6NJ_P0044819 Gm21987 protein_coding protein_coding MGP_C57BL6NJ_T0044820.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37711693 37717486 + Gm21987 protein_coding processed_transcript MGP_C57BL6NJ_T0044821.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37711719 37717489 + MGP_C57BL6NJ_P0044821 Gm21987 protein_coding protein_coding MGP_C57BL6NJ_T0044822.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37711737 37717476 + Gm21987 protein_coding retained_intron MGP_C57BL6NJ_T0044824.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37713937 37717468 + Gm21987 protein_coding retained_intron MGP_C57BL6NJ_T0044825.1 MGP_C57BL6NJ_G0023224.1 mouse_genomes_project 16 37713989 37717490 + Gm21987 protein_coding processed_transcript MGP_C57BL6NJ_T0045355.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88184514 88190888 - MGP_C57BL6NJ_P0045355 Atp5j protein_coding protein_coding MGP_C57BL6NJ_T0045356.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88184519 88185462 - Atp5j protein_coding retained_intron MGP_C57BL6NJ_T0045357.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88184519 88192152 - MGP_C57BL6NJ_P0045357 Atp5j protein_coding protein_coding MGP_C57BL6NJ_T0045358.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88184519 88192274 - MGP_C57BL6NJ_P0045358 Atp5j protein_coding protein_coding MGP_C57BL6NJ_T0045359.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88184522 88188256 - Atp5j protein_coding retained_intron MGP_C57BL6NJ_T0045360.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88185087 88192251 - MGP_C57BL6NJ_P0045360 Atp5j protein_coding protein_coding MGP_C57BL6NJ_T0045361.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88186196 88190525 - Atp5j protein_coding processed_transcript MGP_C57BL6NJ_T0045362.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88187719 88191947 - Atp5j protein_coding retained_intron MGP_C57BL6NJ_T0045363.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88187977 88191804 - Atp5j protein_coding processed_transcript MGP_C57BL6NJ_T0045364.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88188017 88191654 - Atp5j protein_coding processed_transcript MGP_C57BL6NJ_T0045365.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88190171 88191481 - Atp5j protein_coding retained_intron MGP_C57BL6NJ_T0045366.1 MGP_C57BL6NJ_G0023386.1 mouse_genomes_project 16 88190924 88192178 - Atp5j protein_coding retained_intron MGP_C57BL6NJ_T0044068.1 MGP_C57BL6NJ_G0023033.1 mouse_genomes_project 16 16354704 16393479 - MGP_C57BL6NJ_P0044068 Cdc45 protein_coding protein_coding MGP_C57BL6NJ_T0044069.1 MGP_C57BL6NJ_G0023033.1 mouse_genomes_project 16 16354710 16393133 - MGP_C57BL6NJ_P0044069 Cdc45 protein_coding protein_coding MGP_C57BL6NJ_T0044070.1 MGP_C57BL6NJ_G0023033.1 mouse_genomes_project 16 16388862 16393494 - MGP_C57BL6NJ_P0044070 Cdc45 protein_coding protein_coding MGP_C57BL6NJ_T0045421.1 MGP_C57BL6NJ_G0023406.1 mouse_genomes_project 16 92393354 92394148 - MGP_C57BL6NJ_P0045421 2310061N02Rik protein_coding protein_coding MGP_C57BL6NJ_T0101353.1 MGP_C57BL6NJ_G0039399.1 mouse_genomes_project 16 81122517 81122647 - Gm25038 snoRNA snoRNA MGP_C57BL6NJ_T0000018.1 MGP_C57BL6NJ_G0000011.1 mouse_genomes_project 16 16649416 16649870 - MGP_C57BL6NJ_P0000018 Iglc1 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0045757.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100427977 100525566 - MGP_C57BL6NJ_P0045757 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045758.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100428334 100525585 - MGP_C57BL6NJ_P0045758 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045759.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100435162 100525585 - MGP_C57BL6NJ_P0045759 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045760.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100437996 100525585 - MGP_C57BL6NJ_P0045760 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045761.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100439867 100467342 - MGP_C57BL6NJ_P0045761 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045762.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100440750 100487092 - MGP_C57BL6NJ_P0045762 Brwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045763.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100441554 100451813 - Brwd1 protein_coding retained_intron MGP_C57BL6NJ_T0045764.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100456111 100457809 - Brwd1 protein_coding retained_intron MGP_C57BL6NJ_T0045765.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100459413 100459866 - Brwd1 protein_coding retained_intron MGP_C57BL6NJ_T0045766.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100472980 100475566 - Brwd1 protein_coding retained_intron MGP_C57BL6NJ_T0045767.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100475797 100501064 - MGP_C57BL6NJ_P0045767 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0045768.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100475921 100501029 - MGP_C57BL6NJ_P0045768 Brwd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045769.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100486153 100487375 - Brwd1 protein_coding retained_intron MGP_C57BL6NJ_T0045770.1 MGP_C57BL6NJ_G0023496.1 mouse_genomes_project 16 100509033 100525664 - MGP_C57BL6NJ_P0045770 Brwd1 protein_coding protein_coding MGP_C57BL6NJ_T0101328.1 MGP_C57BL6NJ_G0039374.1 mouse_genomes_project 16 30933542 30933686 - Gm25848 snoRNA snoRNA MGP_C57BL6NJ_T0098829.1 MGP_C57BL6NJ_G0036893.1 mouse_genomes_project 16 13140282 13141463 + pseudogene pseudogene MGP_C57BL6NJ_T0044658.1 MGP_C57BL6NJ_G0023178.1 mouse_genomes_project 16 33637116 33664722 + MGP_C57BL6NJ_P0044658 Ropn1 protein_coding protein_coding MGP_C57BL6NJ_T0044659.1 MGP_C57BL6NJ_G0023178.1 mouse_genomes_project 16 33638383 33666139 + MGP_C57BL6NJ_P0044659 Ropn1 protein_coding protein_coding MGP_C57BL6NJ_T0044973.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698526 44720855 + MGP_C57BL6NJ_P0044973 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044974.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698526 44719462 + MGP_C57BL6NJ_P0044974 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044975.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698526 44720148 + MGP_C57BL6NJ_P0044975 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044976.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698526 44719462 + MGP_C57BL6NJ_P0044976 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044977.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698526 44720148 + MGP_C57BL6NJ_P0044977 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044978.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698540 44737790 + MGP_C57BL6NJ_P0044978 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044979.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698554 44737762 + MGP_C57BL6NJ_P0044979 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044980.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698590 44721070 + MGP_C57BL6NJ_P0044980 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044981.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44698597 44715647 + MGP_C57BL6NJ_P0044981 Cd200r3 protein_coding protein_coding MGP_C57BL6NJ_T0044982.1 MGP_C57BL6NJ_G0023259.1 mouse_genomes_project 16 44720033 44721634 + Cd200r3 protein_coding retained_intron MGP_C57BL6NJ_T0044271.1 MGP_C57BL6NJ_G0023082.1 mouse_genomes_project 16 19893088 19938603 + MGP_C57BL6NJ_P0044271 Senp2 protein_coding protein_coding MGP_C57BL6NJ_T0043552.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7361461 7375278 + MGP_C57BL6NJ_P0043552 Nubp1 protein_coding protein_coding MGP_C57BL6NJ_T0043553.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7361462 7372522 + Nubp1 protein_coding processed_transcript MGP_C57BL6NJ_T0043554.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7361467 7371401 + Nubp1 protein_coding retained_intron MGP_C57BL6NJ_T0043555.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7361483 7375278 + Nubp1 protein_coding retained_intron MGP_C57BL6NJ_T0043556.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7361577 7372287 + Nubp1 protein_coding retained_intron MGP_C57BL6NJ_T0043558.1 MGP_C57BL6NJ_G0022921.1 mouse_genomes_project 16 7372085 7374196 + Nubp1 protein_coding processed_transcript MGP_C57BL6NJ_T0044425.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29037554 29078667 - MGP_C57BL6NJ_P0044425 Tmem44 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044426.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29037561 29078114 - Tmem44 protein_coding retained_intron MGP_C57BL6NJ_T0044427.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29037561 29078738 - MGP_C57BL6NJ_P0044427 Tmem44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044428.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29039397 29078746 - MGP_C57BL6NJ_P0044428 Tmem44 protein_coding protein_coding MGP_C57BL6NJ_T0044429.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29039399 29078746 - MGP_C57BL6NJ_P0044429 Tmem44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044430.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29039676 29067812 - MGP_C57BL6NJ_P0044430 Tmem44 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044431.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29043267 29078707 - Tmem44 protein_coding retained_intron MGP_C57BL6NJ_T0044432.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29043648 29079010 - Tmem44 protein_coding retained_intron MGP_C57BL6NJ_T0044433.1 MGP_C57BL6NJ_G0023129.1 mouse_genomes_project 16 29070615 29078696 - Tmem44 protein_coding processed_transcript MGP_C57BL6NJ_T0045336.1 MGP_C57BL6NJ_G0023377.1 mouse_genomes_project 16 80487785 80498763 + MGP_C57BL6NJ_P0045336 Gm17333 protein_coding protein_coding MGP_C57BL6NJ_T0003809.1 MGP_C57BL6NJ_G0003437.1 mouse_genomes_project 16 14493175 14494250 + Gm15648 antisense antisense MGP_C57BL6NJ_T0044359.1 MGP_C57BL6NJ_G0023108.1 mouse_genomes_project 16 24209575 24364921 - MGP_C57BL6NJ_P0044359 P3h2 protein_coding protein_coding MGP_C57BL6NJ_T0044360.1 MGP_C57BL6NJ_G0023108.1 mouse_genomes_project 16 24223594 24236905 - P3h2 protein_coding retained_intron MGP_C57BL6NJ_T0044361.1 MGP_C57BL6NJ_G0023108.1 mouse_genomes_project 16 24237234 24244522 - P3h2 protein_coding processed_transcript MGP_C57BL6NJ_T0044362.1 MGP_C57BL6NJ_G0023108.1 mouse_genomes_project 16 24248891 24265362 - P3h2 protein_coding processed_transcript MGP_C57BL6NJ_T0045058.1 MGP_C57BL6NJ_G0023278.1 mouse_genomes_project 16 48330128 48345461 + MGP_C57BL6NJ_P0045058 Dppa2 protein_coding protein_coding MGP_C57BL6NJ_T0044288.1 MGP_C57BL6NJ_G0023086.1 mouse_genomes_project 16 20412510 20606888 - MGP_C57BL6NJ_P0044288 Dgkg protein_coding protein_coding MGP_C57BL6NJ_T0044289.1 MGP_C57BL6NJ_G0023086.1 mouse_genomes_project 16 20413271 20606936 - MGP_C57BL6NJ_P0044289 Dgkg protein_coding protein_coding MGP_C57BL6NJ_T0044290.1 MGP_C57BL6NJ_G0023086.1 mouse_genomes_project 16 20495090 20606903 - MGP_C57BL6NJ_P0044290 Dgkg protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044291.1 MGP_C57BL6NJ_G0023086.1 mouse_genomes_project 16 20541257 20606743 - Dgkg protein_coding processed_transcript MGP_C57BL6NJ_T0043557.1 MGP_C57BL6NJ_G0022922.1 mouse_genomes_project 16 7371406 7398211 - MGP_C57BL6NJ_P0043557 Tvp23a protein_coding protein_coding MGP_C57BL6NJ_T0043559.1 MGP_C57BL6NJ_G0022922.1 mouse_genomes_project 16 7374093 7397993 - MGP_C57BL6NJ_P0043559 Tvp23a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043560.1 MGP_C57BL6NJ_G0022922.1 mouse_genomes_project 16 7375060 7398176 - Tvp23a protein_coding processed_transcript MGP_C57BL6NJ_T0043561.1 MGP_C57BL6NJ_G0022922.1 mouse_genomes_project 16 7376712 7380034 - Tvp23a protein_coding processed_transcript MGP_C57BL6NJ_T0043562.1 MGP_C57BL6NJ_G0022922.1 mouse_genomes_project 16 7377888 7380110 - Tvp23a protein_coding processed_transcript MGP_C57BL6NJ_T0044926.1 MGP_C57BL6NJ_G0023248.1 mouse_genomes_project 16 43861024 43882029 + MGP_C57BL6NJ_P0044926 Naa50 protein_coding protein_coding MGP_C57BL6NJ_T0044927.1 MGP_C57BL6NJ_G0023248.1 mouse_genomes_project 16 43861047 43882921 + MGP_C57BL6NJ_P0044927 Naa50 protein_coding protein_coding MGP_C57BL6NJ_T0044928.1 MGP_C57BL6NJ_G0023248.1 mouse_genomes_project 16 43861080 43882027 + MGP_C57BL6NJ_P0044928 Naa50 protein_coding protein_coding MGP_C57BL6NJ_T0044929.1 MGP_C57BL6NJ_G0023248.1 mouse_genomes_project 16 43861086 43880725 + MGP_C57BL6NJ_P0044929 Naa50 protein_coding protein_coding MGP_C57BL6NJ_T0044349.1 MGP_C57BL6NJ_G0023106.1 mouse_genomes_project 16 23482184 23648094 + MGP_C57BL6NJ_P0044349 Tprg protein_coding protein_coding MGP_C57BL6NJ_T0044350.1 MGP_C57BL6NJ_G0023106.1 mouse_genomes_project 16 23482188 23522258 + Tprg protein_coding retained_intron MGP_C57BL6NJ_T0100027.1 MGP_C57BL6NJ_G0038073.1 mouse_genomes_project 16 23948513 23948620 - Gm24928 snRNA snRNA MGP_C57BL6NJ_T0045235.1 MGP_C57BL6NJ_G0023340.1 mouse_genomes_project 16 60132869 60133905 - MGP_C57BL6NJ_P0045235 protein_coding protein_coding MGP_C57BL6NJ_T0045352.1 MGP_C57BL6NJ_G0023385.1 mouse_genomes_project 16 88125092 88181932 + MGP_C57BL6NJ_P0045352 Jam2 protein_coding protein_coding MGP_C57BL6NJ_T0045353.1 MGP_C57BL6NJ_G0023385.1 mouse_genomes_project 16 88125355 88167000 + MGP_C57BL6NJ_P0045353 Jam2 protein_coding protein_coding MGP_C57BL6NJ_T0045354.1 MGP_C57BL6NJ_G0023385.1 mouse_genomes_project 16 88165410 88178890 + Jam2 protein_coding processed_transcript MGP_C57BL6NJ_T0045272.1 MGP_C57BL6NJ_G0023355.1 mouse_genomes_project 16 64130587 64207915 + MGP_C57BL6NJ_P0045272 Pros1 protein_coding protein_coding MGP_C57BL6NJ_T0045273.1 MGP_C57BL6NJ_G0023355.1 mouse_genomes_project 16 64173567 64175789 + Pros1 protein_coding retained_intron MGP_C57BL6NJ_T0045274.1 MGP_C57BL6NJ_G0023355.1 mouse_genomes_project 16 64200035 64206959 + Pros1 protein_coding processed_transcript MGP_C57BL6NJ_T0010384.1 MGP_C57BL6NJ_G0008469.1 mouse_genomes_project 16 100480779 100480903 - Gm27833 miRNA miRNA MGP_C57BL6NJ_T0100033.1 MGP_C57BL6NJ_G0038079.1 mouse_genomes_project 16 35386557 35386662 - Gm24801 snRNA snRNA MGP_C57BL6NJ_T0043480.1 MGP_C57BL6NJ_G0022901.1 mouse_genomes_project 16 1765956 1808515 + MGP_C57BL6NJ_P0043480 Sec14l5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045216.1 MGP_C57BL6NJ_G0023329.1 mouse_genomes_project 16 59724098 59725202 - MGP_C57BL6NJ_P0045216 Olfr181 protein_coding protein_coding MGP_C57BL6NJ_T0045217.1 MGP_C57BL6NJ_G0023329.1 mouse_genomes_project 16 59724098 59727186 - MGP_C57BL6NJ_P0045217 Olfr181 protein_coding protein_coding MGP_C57BL6NJ_T0045218.1 MGP_C57BL6NJ_G0023329.1 mouse_genomes_project 16 59724726 59727186 - MGP_C57BL6NJ_P0045218 Olfr181 protein_coding protein_coding MGP_C57BL6NJ_T0045219.1 MGP_C57BL6NJ_G0023329.1 mouse_genomes_project 16 59724874 59727150 - MGP_C57BL6NJ_P0045219 Olfr181 protein_coding protein_coding MGP_C57BL6NJ_T0044116.1 MGP_C57BL6NJ_G0023051.1 mouse_genomes_project 16 17498644 17506082 - MGP_C57BL6NJ_P0044116 A930003A15Rik protein_coding protein_coding MGP_C57BL6NJ_T0044569.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31601738 31654319 - MGP_C57BL6NJ_P0044569 Rubcn protein_coding protein_coding MGP_C57BL6NJ_T0044570.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31601742 31604956 - Rubcn protein_coding retained_intron MGP_C57BL6NJ_T0044571.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31601742 31654292 - MGP_C57BL6NJ_P0044571 Rubcn protein_coding protein_coding MGP_C57BL6NJ_T0044572.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31601755 31654092 - MGP_C57BL6NJ_P0044572 Rubcn protein_coding protein_coding MGP_C57BL6NJ_T0044573.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31601763 31654304 - MGP_C57BL6NJ_P0044573 Rubcn protein_coding protein_coding MGP_C57BL6NJ_T0044574.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31603502 31618630 - Rubcn protein_coding retained_intron MGP_C57BL6NJ_T0044575.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31607963 31609754 - Rubcn protein_coding retained_intron MGP_C57BL6NJ_T0044576.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31615560 31616607 - Rubcn protein_coding retained_intron MGP_C57BL6NJ_T0044577.1 MGP_C57BL6NJ_G0023163.1 mouse_genomes_project 16 31647645 31654291 - Rubcn protein_coding processed_transcript MGP_C57BL6NJ_T0013439.1 MGP_C57BL6NJ_G0011484.1 mouse_genomes_project 16 8545373 8546859 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013457.1 MGP_C57BL6NJ_G0011502.1 mouse_genomes_project 16 17330139 17330806 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045210.1 MGP_C57BL6NJ_G0023326.1 mouse_genomes_project 16 59675829 59677588 - MGP_C57BL6NJ_P0045210 Olfr177 protein_coding protein_coding MGP_C57BL6NJ_T0045211.1 MGP_C57BL6NJ_G0023326.1 mouse_genomes_project 16 59675829 59676759 - MGP_C57BL6NJ_P0045211 Olfr177 protein_coding protein_coding MGP_C57BL6NJ_T0017950.1 MGP_C57BL6NJ_G0015704.1 mouse_genomes_project 16 15530357 15531506 + Gm15954 processed_transcript processed_transcript MGP_C57BL6NJ_T0043727.1 MGP_C57BL6NJ_G0022963.1 mouse_genomes_project 16 11966110 11969654 + MGP_C57BL6NJ_P0043727 Snai2 protein_coding protein_coding MGP_C57BL6NJ_T0043479.1 MGP_C57BL6NJ_G0022900.1 mouse_genomes_project 16 1701892 1751573 - MGP_C57BL6NJ_P0043479 Ppl protein_coding protein_coding MGP_C57BL6NJ_T0045472.1 MGP_C57BL6NJ_G0023442.1 mouse_genomes_project 16 94110883 94171833 - MGP_C57BL6NJ_P0045472 Scaf4 protein_coding protein_coding MGP_C57BL6NJ_T0045473.1 MGP_C57BL6NJ_G0023442.1 mouse_genomes_project 16 94111082 94171950 - MGP_C57BL6NJ_P0045473 Scaf4 protein_coding protein_coding MGP_C57BL6NJ_T0043458.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619550 1620569 + MGP_C57BL6NJ_P0043458 Smim22 protein_coding protein_coding MGP_C57BL6NJ_T0043459.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619578 1620305 + Smim22 protein_coding retained_intron MGP_C57BL6NJ_T0043460.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619599 1620572 + MGP_C57BL6NJ_P0043460 Smim22 protein_coding protein_coding MGP_C57BL6NJ_T0043461.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619614 1620572 + Smim22 protein_coding processed_transcript MGP_C57BL6NJ_T0043462.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619614 1620572 + MGP_C57BL6NJ_P0043462 Smim22 protein_coding protein_coding MGP_C57BL6NJ_T0043463.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619614 1620569 + MGP_C57BL6NJ_P0043463 Smim22 protein_coding protein_coding MGP_C57BL6NJ_T0043464.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1619621 1620572 + Smim22 protein_coding processed_transcript MGP_C57BL6NJ_T0043465.1 MGP_C57BL6NJ_G0022896.1 mouse_genomes_project 16 1620030 1620572 + Smim22 protein_coding retained_intron MGP_C57BL6NJ_T0013474.1 MGP_C57BL6NJ_G0011519.1 mouse_genomes_project 16 35005539 35005812 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101341.1 MGP_C57BL6NJ_G0039387.1 mouse_genomes_project 16 55148011 55148136 + Gm23180 snoRNA snoRNA MGP_C57BL6NJ_T0007032.1 MGP_C57BL6NJ_G0005795.1 mouse_genomes_project 16 57999098 57999705 + Gm26800 lincRNA lincRNA MGP_C57BL6NJ_T0043499.1 MGP_C57BL6NJ_G0022907.1 mouse_genomes_project 16 5198926 5216548 - MGP_C57BL6NJ_P0043499 Tmem114 protein_coding protein_coding MGP_C57BL6NJ_T0044999.1 MGP_C57BL6NJ_G0023263.1 mouse_genomes_project 16 44992987 45023503 + MGP_C57BL6NJ_P0044999 Btla protein_coding protein_coding MGP_C57BL6NJ_T0045000.1 MGP_C57BL6NJ_G0023263.1 mouse_genomes_project 16 44993009 45023506 + MGP_C57BL6NJ_P0045000 Btla protein_coding protein_coding MGP_C57BL6NJ_T0045775.1 MGP_C57BL6NJ_G0023498.1 mouse_genomes_project 16 100607446 100616816 + Wrb protein_coding retained_intron MGP_C57BL6NJ_T0045776.1 MGP_C57BL6NJ_G0023498.1 mouse_genomes_project 16 100607446 100608804 + Wrb protein_coding processed_transcript MGP_C57BL6NJ_T0045777.1 MGP_C57BL6NJ_G0023498.1 mouse_genomes_project 16 100607446 100619918 + MGP_C57BL6NJ_P0045777 Wrb protein_coding protein_coding MGP_C57BL6NJ_T0045778.1 MGP_C57BL6NJ_G0023498.1 mouse_genomes_project 16 100607450 100613881 + MGP_C57BL6NJ_P0045778 Wrb protein_coding protein_coding MGP_C57BL6NJ_T0101319.1 MGP_C57BL6NJ_G0039365.1 mouse_genomes_project 16 21155327 21155396 + Snord2 snoRNA snoRNA MGP_C57BL6NJ_T0010323.1 MGP_C57BL6NJ_G0008408.1 mouse_genomes_project 16 7207984 7208056 + Gm22932 miRNA miRNA MGP_C57BL6NJ_T0045474.1 MGP_C57BL6NJ_G0023443.1 mouse_genomes_project 16 94294027 94418248 + MGP_C57BL6NJ_P0045474 Hunk protein_coding protein_coding MGP_C57BL6NJ_T0043452.1 MGP_C57BL6NJ_G0022891.1 mouse_genomes_project 16 1484446 1545044 + MGP_C57BL6NJ_P0043452 Mgrn1 protein_coding protein_coding MGP_C57BL6NJ_T0043453.1 MGP_C57BL6NJ_G0022891.1 mouse_genomes_project 16 1484446 1545044 + MGP_C57BL6NJ_P0043453 Mgrn1 protein_coding protein_coding MGP_C57BL6NJ_T0045206.1 MGP_C57BL6NJ_G0023323.1 mouse_genomes_project 16 59558169 59559963 - MGP_C57BL6NJ_P0045206 Olfr172 protein_coding protein_coding MGP_C57BL6NJ_T0010349.1 MGP_C57BL6NJ_G0008434.1 mouse_genomes_project 16 30960432 30960566 - Mir1946a miRNA miRNA MGP_C57BL6NJ_T0003818.1 MGP_C57BL6NJ_G0003445.1 mouse_genomes_project 16 31587523 31591247 + Gm26769 antisense antisense MGP_C57BL6NJ_T0011665.1 MGP_C57BL6NJ_G0009750.1 mouse_genomes_project 16 4982089 4982363 + Gm23476 misc_RNA misc_RNA MGP_C57BL6NJ_T0045167.1 MGP_C57BL6NJ_G0023312.1 mouse_genomes_project 16 57983061 58008189 - MGP_C57BL6NJ_P0045167 Tmem30c protein_coding protein_coding MGP_C57BL6NJ_T0045168.1 MGP_C57BL6NJ_G0023312.1 mouse_genomes_project 16 57983362 58008175 - MGP_C57BL6NJ_P0045168 Tmem30c protein_coding protein_coding MGP_C57BL6NJ_T0045169.1 MGP_C57BL6NJ_G0023312.1 mouse_genomes_project 16 57986261 58008175 - MGP_C57BL6NJ_P0045169 Tmem30c protein_coding protein_coding MGP_C57BL6NJ_T0045163.1 MGP_C57BL6NJ_G0023309.1 mouse_genomes_project 16 57831515 57867432 + MGP_C57BL6NJ_P0045163 Tomm70a protein_coding protein_coding MGP_C57BL6NJ_T0045244.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60394100 60414700 + MGP_C57BL6NJ_P0045244 Mina protein_coding protein_coding MGP_C57BL6NJ_T0045245.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60394129 60399893 + MGP_C57BL6NJ_P0045245 Mina protein_coding protein_coding MGP_C57BL6NJ_T0045246.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60394147 60413907 + MGP_C57BL6NJ_P0045246 Mina protein_coding protein_coding MGP_C57BL6NJ_T0045247.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60394393 60414530 + MGP_C57BL6NJ_P0045247 Mina protein_coding protein_coding MGP_C57BL6NJ_T0045248.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60394668 60398084 + MGP_C57BL6NJ_P0045248 Mina protein_coding protein_coding MGP_C57BL6NJ_T0045249.1 MGP_C57BL6NJ_G0023348.1 mouse_genomes_project 16 60409775 60412057 + Mina protein_coding retained_intron MGP_C57BL6NJ_T0001092.1 MGP_C57BL6NJ_G0001000.1 mouse_genomes_project 16 78638171 78639831 + TEC TEC MGP_C57BL6NJ_T0045296.1 MGP_C57BL6NJ_G0023366.1 mouse_genomes_project 16 71813126 71828798 - MGP_C57BL6NJ_P0045296 protein_coding protein_coding MGP_C57BL6NJ_T0044477.1 MGP_C57BL6NJ_G0023138.1 mouse_genomes_project 16 30524016 30544227 + MGP_C57BL6NJ_P0044477 Mfi2 protein_coding protein_coding MGP_C57BL6NJ_T0000051.1 MGP_C57BL6NJ_G0000042.1 mouse_genomes_project 16 16781468 16781506 - MGP_C57BL6NJ_P0000051 Iglj2 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0013499.1 MGP_C57BL6NJ_G0011544.1 mouse_genomes_project 16 62601266 62601777 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003825.1 MGP_C57BL6NJ_G0003450.1 mouse_genomes_project 16 35068817 35082961 - Gm15564 antisense antisense MGP_C57BL6NJ_T0003826.1 MGP_C57BL6NJ_G0003450.1 mouse_genomes_project 16 35068818 35086032 - Gm15564 antisense antisense MGP_C57BL6NJ_T0003827.1 MGP_C57BL6NJ_G0003450.1 mouse_genomes_project 16 35068840 35083021 - Gm15564 antisense antisense MGP_C57BL6NJ_T0010356.1 MGP_C57BL6NJ_G0008441.1 mouse_genomes_project 16 43325717 43325800 + Mir568 miRNA miRNA MGP_C57BL6NJ_T0045200.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59523858 59530200 + MGP_C57BL6NJ_P0045200 Cldnd1 protein_coding protein_coding MGP_C57BL6NJ_T0045201.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59523873 59529557 + MGP_C57BL6NJ_P0045201 Cldnd1 protein_coding protein_coding MGP_C57BL6NJ_T0045202.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59523971 59528938 + MGP_C57BL6NJ_P0045202 Cldnd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045203.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59523987 59528857 + Cldnd1 protein_coding processed_transcript MGP_C57BL6NJ_T0045204.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59523996 59527328 + MGP_C57BL6NJ_P0045204 Cldnd1 protein_coding protein_coding MGP_C57BL6NJ_T0045205.1 MGP_C57BL6NJ_G0023322.1 mouse_genomes_project 16 59528212 59528929 + Cldnd1 protein_coding retained_intron MGP_C57BL6NJ_T0043743.1 MGP_C57BL6NJ_G0022971.1 mouse_genomes_project 16 13574910 13581202 + Yars2 protein_coding retained_intron MGP_C57BL6NJ_T0043744.1 MGP_C57BL6NJ_G0022971.1 mouse_genomes_project 16 13574917 13583311 + MGP_C57BL6NJ_P0043744 Yars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043745.1 MGP_C57BL6NJ_G0022971.1 mouse_genomes_project 16 13574920 13583313 + MGP_C57BL6NJ_P0043745 Yars2 protein_coding protein_coding MGP_C57BL6NJ_T0043746.1 MGP_C57BL6NJ_G0022971.1 mouse_genomes_project 16 13575489 13580920 + Yars2 protein_coding processed_transcript MGP_C57BL6NJ_T0043747.1 MGP_C57BL6NJ_G0022971.1 mouse_genomes_project 16 13576536 13581059 + MGP_C57BL6NJ_P0043747 Yars2 protein_coding protein_coding MGP_C57BL6NJ_T0043872.1 MGP_C57BL6NJ_G0022994.1 mouse_genomes_project 16 14787298 14813409 + MGP_C57BL6NJ_P0043872 Snap29 protein_coding protein_coding MGP_C57BL6NJ_T0100009.1 MGP_C57BL6NJ_G0038055.1 mouse_genomes_project 16 1674543 1674651 - Gm23483 snRNA snRNA MGP_C57BL6NJ_T0043663.1 MGP_C57BL6NJ_G0022949.1 mouse_genomes_project 16 10863798 10881478 - MGP_C57BL6NJ_P0043663 Pla2g10 protein_coding protein_coding MGP_C57BL6NJ_T0043664.1 MGP_C57BL6NJ_G0022949.1 mouse_genomes_project 16 10863800 10882018 - MGP_C57BL6NJ_P0043664 Pla2g10 protein_coding protein_coding MGP_C57BL6NJ_T0043665.1 MGP_C57BL6NJ_G0022949.1 mouse_genomes_project 16 10864135 10881754 - Pla2g10 protein_coding processed_transcript MGP_C57BL6NJ_T0043666.1 MGP_C57BL6NJ_G0022949.1 mouse_genomes_project 16 10876185 10881714 - Pla2g10 protein_coding processed_transcript MGP_C57BL6NJ_T0045425.1 MGP_C57BL6NJ_G0023410.1 mouse_genomes_project 16 92473254 92474209 - MGP_C57BL6NJ_P0045425 2310057N15Rik protein_coding protein_coding MGP_C57BL6NJ_T0010329.1 MGP_C57BL6NJ_G0008414.1 mouse_genomes_project 16 10982784 10982873 + Gm27734 miRNA miRNA MGP_C57BL6NJ_T0045012.1 MGP_C57BL6NJ_G0023265.1 mouse_genomes_project 16 45200945 45246093 - Gm609 protein_coding processed_transcript MGP_C57BL6NJ_T0045013.1 MGP_C57BL6NJ_G0023265.1 mouse_genomes_project 16 45205876 45278588 - MGP_C57BL6NJ_P0045013 Gm609 protein_coding protein_coding MGP_C57BL6NJ_T0043450.1 MGP_C57BL6NJ_G0022890.1 mouse_genomes_project 16 1472135 1477663 - MGP_C57BL6NJ_P0043450 Ubald1 protein_coding protein_coding MGP_C57BL6NJ_T0043451.1 MGP_C57BL6NJ_G0022890.1 mouse_genomes_project 16 1472145 1477162 - Ubald1 protein_coding retained_intron MGP_C57BL6NJ_T0045442.1 MGP_C57BL6NJ_G0023425.1 mouse_genomes_project 16 92769122 92769588 - MGP_C57BL6NJ_P0045442 Gm10228 protein_coding protein_coding MGP_C57BL6NJ_T0044516.1 MGP_C57BL6NJ_G0023148.1 mouse_genomes_project 16 30919951 30936936 - MGP_C57BL6NJ_P0044516 Fbxo45 protein_coding protein_coding MGP_C57BL6NJ_T0001109.1 MGP_C57BL6NJ_G0001016.1 mouse_genomes_project 16 100168432 100169284 + TEC TEC MGP_C57BL6NJ_T0044764.1 MGP_C57BL6NJ_G0023209.1 mouse_genomes_project 16 36199595 36228683 + MGP_C57BL6NJ_P0044764 Hcls1 protein_coding protein_coding MGP_C57BL6NJ_T0044765.1 MGP_C57BL6NJ_G0023209.1 mouse_genomes_project 16 36201899 36227001 + MGP_C57BL6NJ_P0044765 Hcls1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044766.1 MGP_C57BL6NJ_G0023209.1 mouse_genomes_project 16 36220221 36222104 + Hcls1 protein_coding retained_intron MGP_C57BL6NJ_T0044681.1 MGP_C57BL6NJ_G0023187.1 mouse_genomes_project 16 34842811 34906616 + MGP_C57BL6NJ_P0044681 Hspbap1 protein_coding protein_coding MGP_C57BL6NJ_T0045228.1 MGP_C57BL6NJ_G0023334.1 mouse_genomes_project 16 59959966 59960969 - MGP_C57BL6NJ_P0045228 protein_coding protein_coding MGP_C57BL6NJ_T0045230.1 MGP_C57BL6NJ_G0023334.1 mouse_genomes_project 16 59960022 59960952 - MGP_C57BL6NJ_P0045230 protein_coding protein_coding MGP_C57BL6NJ_T0102191.1 MGP_C57BL6NJ_G0040205.1 mouse_genomes_project 16 79369377 79392883 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102192.1 MGP_C57BL6NJ_G0040205.1 mouse_genomes_project 16 79371165 79371534 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0044097.1 MGP_C57BL6NJ_G0023040.1 mouse_genomes_project 16 16997996 16999036 - MGP_C57BL6NJ_P0044097 Olfr165 protein_coding protein_coding MGP_C57BL6NJ_T0044099.1 MGP_C57BL6NJ_G0023040.1 mouse_genomes_project 16 16998592 17010271 - MGP_C57BL6NJ_P0044099 Olfr165 protein_coding protein_coding MGP_C57BL6NJ_T0043568.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505132 7719755 + MGP_C57BL6NJ_P0043568 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043569.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505132 7719755 + MGP_C57BL6NJ_P0043569 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043570.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505157 7719755 + MGP_C57BL6NJ_P0043570 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043571.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505170 7524863 + Clec16a protein_coding processed_transcript MGP_C57BL6NJ_T0043572.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505191 7690427 + MGP_C57BL6NJ_P0043572 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043573.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505202 7661488 + MGP_C57BL6NJ_P0043573 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043574.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505202 7519532 + MGP_C57BL6NJ_P0043574 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043575.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7505202 7714790 + MGP_C57BL6NJ_P0043575 Clec16a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043576.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7564076 7715431 + MGP_C57BL6NJ_P0043576 Clec16a protein_coding protein_coding MGP_C57BL6NJ_T0043577.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7574132 7597082 + Clec16a protein_coding processed_transcript MGP_C57BL6NJ_T0043578.1 MGP_C57BL6NJ_G0022925.1 mouse_genomes_project 16 7594316 7605553 + Clec16a protein_coding processed_transcript MGP_C57BL6NJ_T0100020.1 MGP_C57BL6NJ_G0038066.1 mouse_genomes_project 16 15848961 15849109 + Gm26170 snRNA snRNA MGP_C57BL6NJ_T0100044.1 MGP_C57BL6NJ_G0038090.1 mouse_genomes_project 16 47442277 47442384 - Gm24651 snRNA snRNA MGP_C57BL6NJ_T0044341.1 MGP_C57BL6NJ_G0023101.1 mouse_genomes_project 16 21734851 21739087 + MGP_C57BL6NJ_P0044341 Rtp4 protein_coding protein_coding MGP_C57BL6NJ_T0099355.1 MGP_C57BL6NJ_G0037414.1 mouse_genomes_project 16 96141032 96142955 + Gm16310 sense_intronic sense_intronic MGP_C57BL6NJ_T0044105.1 MGP_C57BL6NJ_G0023047.1 mouse_genomes_project 16 17234902 17248692 - MGP_C57BL6NJ_P0044105 protein_coding protein_coding MGP_C57BL6NJ_T0044714.1 MGP_C57BL6NJ_G0023199.1 mouse_genomes_project 16 35448233 35465998 + MGP_C57BL6NJ_P0044714 protein_coding protein_coding MGP_C57BL6NJ_T0044367.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24848849 24985495 + MGP_C57BL6NJ_P0044367 Il1rap protein_coding protein_coding MGP_C57BL6NJ_T0044368.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24848887 24984584 + MGP_C57BL6NJ_P0044368 Il1rap protein_coding protein_coding MGP_C57BL6NJ_T0044369.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24848898 24963756 + MGP_C57BL6NJ_P0044369 Il1rap protein_coding protein_coding MGP_C57BL6NJ_T0044370.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24848902 24977953 + MGP_C57BL6NJ_P0044370 Il1rap protein_coding protein_coding MGP_C57BL6NJ_T0044371.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24888482 24975277 + MGP_C57BL6NJ_P0044371 Il1rap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044372.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24982664 24991859 + MGP_C57BL6NJ_P0044372 Il1rap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044373.1 MGP_C57BL6NJ_G0023112.1 mouse_genomes_project 16 24988783 24989970 + Il1rap protein_coding processed_transcript MGP_C57BL6NJ_T0044443.1 MGP_C57BL6NJ_G0023132.1 mouse_genomes_project 16 29521773 29664202 - MGP_C57BL6NJ_P0044443 Xxylt1 protein_coding protein_coding MGP_C57BL6NJ_T0044444.1 MGP_C57BL6NJ_G0023132.1 mouse_genomes_project 16 29523607 29643025 - Xxylt1 protein_coding processed_transcript MGP_C57BL6NJ_T0044445.1 MGP_C57BL6NJ_G0023132.1 mouse_genomes_project 16 29584176 29651424 - Xxylt1 protein_coding processed_transcript MGP_C57BL6NJ_T0044446.1 MGP_C57BL6NJ_G0023132.1 mouse_genomes_project 16 29584218 29649451 - Xxylt1 protein_coding processed_transcript MGP_C57BL6NJ_T0102186.1 MGP_C57BL6NJ_G0040201.1 mouse_genomes_project 16 12689951 12690728 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0044800.1 MGP_C57BL6NJ_G0023216.1 mouse_genomes_project 16 36969438 36976722 - MGP_C57BL6NJ_P0044800 Ndufb4 protein_coding protein_coding MGP_C57BL6NJ_T0044801.1 MGP_C57BL6NJ_G0023216.1 mouse_genomes_project 16 36969869 36971628 - Ndufb4 protein_coding retained_intron MGP_C57BL6NJ_T0044791.1 MGP_C57BL6NJ_G0023214.1 mouse_genomes_project 16 36850546 36884150 + MGP_C57BL6NJ_P0044791 Rabl3 protein_coding protein_coding MGP_C57BL6NJ_T0044792.1 MGP_C57BL6NJ_G0023214.1 mouse_genomes_project 16 36850561 36884147 + MGP_C57BL6NJ_P0044792 Rabl3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044793.1 MGP_C57BL6NJ_G0023214.1 mouse_genomes_project 16 36850566 36875803 + Rabl3 protein_coding retained_intron MGP_C57BL6NJ_T0044794.1 MGP_C57BL6NJ_G0023214.1 mouse_genomes_project 16 36875488 36879706 + Rabl3 protein_coding retained_intron MGP_C57BL6NJ_T0013445.1 MGP_C57BL6NJ_G0011490.1 mouse_genomes_project 16 12669062 12670116 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044685.1 MGP_C57BL6NJ_G0023189.1 mouse_genomes_project 16 35013144 35027492 - MGP_C57BL6NJ_P0044685 Dtx3l protein_coding protein_coding MGP_C57BL6NJ_T0044686.1 MGP_C57BL6NJ_G0023189.1 mouse_genomes_project 16 35020211 35027492 - MGP_C57BL6NJ_P0044686 Dtx3l protein_coding protein_coding MGP_C57BL6NJ_T0044447.1 MGP_C57BL6NJ_G0023133.1 mouse_genomes_project 16 29673773 29796552 - MGP_C57BL6NJ_P0044447 Acap2 protein_coding protein_coding MGP_C57BL6NJ_T0044448.1 MGP_C57BL6NJ_G0023133.1 mouse_genomes_project 16 29678125 29796305 - MGP_C57BL6NJ_P0044448 Acap2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013464.1 MGP_C57BL6NJ_G0011509.1 mouse_genomes_project 16 21845654 21847241 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044420.1 MGP_C57BL6NJ_G0023128.1 mouse_genomes_project 16 28810357 28895205 - MGP_C57BL6NJ_P0044420 Atp13a3 protein_coding protein_coding MGP_C57BL6NJ_T0044421.1 MGP_C57BL6NJ_G0023128.1 mouse_genomes_project 16 28810357 28895205 - MGP_C57BL6NJ_P0044421 Atp13a3 protein_coding protein_coding MGP_C57BL6NJ_T0044422.1 MGP_C57BL6NJ_G0023128.1 mouse_genomes_project 16 28856777 28859852 - Atp13a3 protein_coding retained_intron MGP_C57BL6NJ_T0044423.1 MGP_C57BL6NJ_G0023128.1 mouse_genomes_project 16 28864294 28895160 - Atp13a3 protein_coding retained_intron MGP_C57BL6NJ_T0044424.1 MGP_C57BL6NJ_G0023128.1 mouse_genomes_project 16 28892567 28895512 - Atp13a3 protein_coding retained_intron MGP_C57BL6NJ_T0007009.1 MGP_C57BL6NJ_G0005777.1 mouse_genomes_project 16 28249713 28276829 + Gm26834 lincRNA lincRNA MGP_C57BL6NJ_T0001089.1 MGP_C57BL6NJ_G0000997.1 mouse_genomes_project 16 42983313 42983660 - TEC TEC MGP_C57BL6NJ_T0043846.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646117 14648464 + MGP_C57BL6NJ_P0043846 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043847.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646122 14648464 + MGP_C57BL6NJ_P0043847 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043848.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646136 14647283 + Tmem191c protein_coding processed_transcript MGP_C57BL6NJ_T0043849.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646150 14646905 + Tmem191c protein_coding retained_intron MGP_C57BL6NJ_T0043850.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646150 14648460 + MGP_C57BL6NJ_P0043850 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043851.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646156 14647205 + Tmem191c protein_coding processed_transcript MGP_C57BL6NJ_T0043852.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646242 14647540 + MGP_C57BL6NJ_P0043852 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043853.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646485 14648464 + MGP_C57BL6NJ_P0043853 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043854.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646668 14648008 + MGP_C57BL6NJ_P0043854 Tmem191c protein_coding protein_coding MGP_C57BL6NJ_T0043855.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646889 14647856 + Tmem191c protein_coding retained_intron MGP_C57BL6NJ_T0043856.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14646903 14647969 + Tmem191c protein_coding retained_intron MGP_C57BL6NJ_T0043857.1 MGP_C57BL6NJ_G0022991.1 mouse_genomes_project 16 14647403 14653028 + Tmem191c protein_coding retained_intron MGP_C57BL6NJ_T0017966.1 MGP_C57BL6NJ_G0015714.1 mouse_genomes_project 16 60483866 60529329 - Crybg3 processed_transcript processed_transcript MGP_C57BL6NJ_T0044615.1 MGP_C57BL6NJ_G0023169.1 mouse_genomes_project 16 32060012 32123633 + MGP_C57BL6NJ_P0044615 Osbpl11 protein_coding protein_coding MGP_C57BL6NJ_T0013498.1 MGP_C57BL6NJ_G0011543.1 mouse_genomes_project 16 62212002 62212261 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043869.1 MGP_C57BL6NJ_G0022993.1 mouse_genomes_project 16 14705169 14717372 + MGP_C57BL6NJ_P0043869 Serpind1 protein_coding protein_coding MGP_C57BL6NJ_T0043870.1 MGP_C57BL6NJ_G0022993.1 mouse_genomes_project 16 14705181 14717371 + MGP_C57BL6NJ_P0043870 Serpind1 protein_coding protein_coding MGP_C57BL6NJ_T0101359.1 MGP_C57BL6NJ_G0039405.1 mouse_genomes_project 16 91106936 91107072 - Gm24891 snoRNA snoRNA MGP_C57BL6NJ_T0013494.1 MGP_C57BL6NJ_G0011539.1 mouse_genomes_project 16 57482075 57482712 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045424.1 MGP_C57BL6NJ_G0023409.1 mouse_genomes_project 16 92456567 92457512 + MGP_C57BL6NJ_P0045424 2310034C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045423.1 MGP_C57BL6NJ_G0023408.1 mouse_genomes_project 16 92445765 92448252 - MGP_C57BL6NJ_P0045423 Krtap13 protein_coding protein_coding MGP_C57BL6NJ_T0045241.1 MGP_C57BL6NJ_G0023345.1 mouse_genomes_project 16 60222198 60223203 - MGP_C57BL6NJ_P0045241 Olfr206 protein_coding protein_coding MGP_C57BL6NJ_T0045346.1 MGP_C57BL6NJ_G0023382.1 mouse_genomes_project 16 81675150 81821701 - MGP_C57BL6NJ_P0045346 Tmprss15 protein_coding protein_coding MGP_C57BL6NJ_T0045347.1 MGP_C57BL6NJ_G0023382.1 mouse_genomes_project 16 81675606 81821706 - MGP_C57BL6NJ_P0045347 Tmprss15 protein_coding protein_coding MGP_C57BL6NJ_T0013458.1 MGP_C57BL6NJ_G0011503.1 mouse_genomes_project 16 18234025 18234308 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010341.1 MGP_C57BL6NJ_G0008426.1 mouse_genomes_project 16 18289183 18289268 + Mir1224 miRNA miRNA MGP_C57BL6NJ_T0010327.1 MGP_C57BL6NJ_G0008412.1 mouse_genomes_project 16 10586661 10586748 + Mir365-1 miRNA miRNA MGP_C57BL6NJ_T0045630.1 MGP_C57BL6NJ_G0023474.1 mouse_genomes_project 16 96468809 96543347 - MGP_C57BL6NJ_P0045630 Rcan1 protein_coding protein_coding MGP_C57BL6NJ_T0045631.1 MGP_C57BL6NJ_G0023474.1 mouse_genomes_project 16 96468809 96476938 - MGP_C57BL6NJ_P0045631 Rcan1 protein_coding protein_coding MGP_C57BL6NJ_T0044863.1 MGP_C57BL6NJ_G0023236.1 mouse_genomes_project 16 38216352 38235245 - MGP_C57BL6NJ_P0044863 4930435E12Rik protein_coding protein_coding MGP_C57BL6NJ_T0044864.1 MGP_C57BL6NJ_G0023236.1 mouse_genomes_project 16 38230820 38235227 - 4930435E12Rik protein_coding retained_intron MGP_C57BL6NJ_T0099029.1 MGP_C57BL6NJ_G0037093.1 mouse_genomes_project 16 28614747 28614850 - n-R5s32 rRNA rRNA MGP_C57BL6NJ_T0043628.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8363205 8797212 + MGP_C57BL6NJ_P0043628 Snx29 protein_coding protein_coding MGP_C57BL6NJ_T0043629.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8363205 8448390 + MGP_C57BL6NJ_P0043629 Snx29 protein_coding protein_coding MGP_C57BL6NJ_T0043630.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8450201 8797358 + MGP_C57BL6NJ_P0043630 Snx29 protein_coding protein_coding MGP_C57BL6NJ_T0043631.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8451210 8712274 + MGP_C57BL6NJ_P0043631 Snx29 protein_coding protein_coding MGP_C57BL6NJ_T0043632.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8469228 8729608 + MGP_C57BL6NJ_P0043632 Snx29 protein_coding protein_coding MGP_C57BL6NJ_T0043633.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8494981 8683986 + Snx29 protein_coding retained_intron MGP_C57BL6NJ_T0043634.1 MGP_C57BL6NJ_G0022940.1 mouse_genomes_project 16 8497104 8712215 + Snx29 protein_coding retained_intron MGP_C57BL6NJ_T0000050.1 MGP_C57BL6NJ_G0000041.1 mouse_genomes_project 16 16777765 16777807 - MGP_C57BL6NJ_P0000050 Iglj4 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0099350.1 MGP_C57BL6NJ_G0037409.1 mouse_genomes_project 16 1371398 1373110 - Gm15835 sense_intronic sense_intronic MGP_C57BL6NJ_T0101331.1 MGP_C57BL6NJ_G0039377.1 mouse_genomes_project 16 37515072 37515204 + Gm25617 snoRNA snoRNA MGP_C57BL6NJ_T0101317.1 MGP_C57BL6NJ_G0039363.1 mouse_genomes_project 16 17002868 17003000 + Gm25762 snoRNA snoRNA MGP_C57BL6NJ_T0010363.1 MGP_C57BL6NJ_G0008448.1 mouse_genomes_project 16 56722959 56723063 + Gm24047 miRNA miRNA MGP_C57BL6NJ_T0045268.1 MGP_C57BL6NJ_G0023353.1 mouse_genomes_project 16 64060569 64123334 - MGP_C57BL6NJ_P0045268 Arl13b protein_coding protein_coding MGP_C57BL6NJ_T0045269.1 MGP_C57BL6NJ_G0023353.1 mouse_genomes_project 16 64070575 64078049 - Arl13b protein_coding processed_transcript MGP_C57BL6NJ_T0045271.1 MGP_C57BL6NJ_G0023353.1 mouse_genomes_project 16 64101706 64123334 - Arl13b protein_coding retained_intron MGP_C57BL6NJ_T0010322.1 MGP_C57BL6NJ_G0008407.1 mouse_genomes_project 16 5437825 5437933 - Gm22137 miRNA miRNA MGP_C57BL6NJ_T0010370.1 MGP_C57BL6NJ_G0008455.1 mouse_genomes_project 16 76699178 76699256 - Mir691 miRNA miRNA MGP_C57BL6NJ_T0043943.1 MGP_C57BL6NJ_G0023004.1 mouse_genomes_project 16 15052878 15130090 - MGP_C57BL6NJ_P0043943 Med15 protein_coding protein_coding MGP_C57BL6NJ_T0043944.1 MGP_C57BL6NJ_G0023004.1 mouse_genomes_project 16 15052878 15130090 - MGP_C57BL6NJ_P0043944 Med15 protein_coding protein_coding MGP_C57BL6NJ_T0044389.1 MGP_C57BL6NJ_G0023120.1 mouse_genomes_project 16 27635571 27785829 - MGP_C57BL6NJ_P0044389 Atp13a5 protein_coding protein_coding MGP_C57BL6NJ_T0044390.1 MGP_C57BL6NJ_G0023120.1 mouse_genomes_project 16 27635634 27785803 - MGP_C57BL6NJ_P0044390 Atp13a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044391.1 MGP_C57BL6NJ_G0023120.1 mouse_genomes_project 16 27636180 27785764 - MGP_C57BL6NJ_P0044391 Atp13a5 protein_coding protein_coding MGP_C57BL6NJ_T0044392.1 MGP_C57BL6NJ_G0023120.1 mouse_genomes_project 16 27740225 27785680 - MGP_C57BL6NJ_P0044392 Atp13a5 protein_coding protein_coding MGP_C57BL6NJ_T0044638.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32928634 33049596 - MGP_C57BL6NJ_P0044638 protein_coding protein_coding MGP_C57BL6NJ_T0044639.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32929539 32933103 - protein_coding retained_intron MGP_C57BL6NJ_T0044640.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32929871 33427439 - MGP_C57BL6NJ_P0044640 protein_coding protein_coding MGP_C57BL6NJ_T0044641.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32929892 33049489 - MGP_C57BL6NJ_P0044641 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044642.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32972277 33119706 - MGP_C57BL6NJ_P0044642 protein_coding protein_coding MGP_C57BL6NJ_T0044643.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32972282 33360342 - MGP_C57BL6NJ_P0044643 protein_coding protein_coding MGP_C57BL6NJ_T0044644.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32972282 33050699 - MGP_C57BL6NJ_P0044644 protein_coding protein_coding MGP_C57BL6NJ_T0044645.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 32972291 33049637 - MGP_C57BL6NJ_P0044645 protein_coding protein_coding MGP_C57BL6NJ_T0044646.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33002310 33553689 - MGP_C57BL6NJ_P0044646 protein_coding protein_coding MGP_C57BL6NJ_T0044647.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33108450 33488731 - MGP_C57BL6NJ_P0044647 protein_coding protein_coding MGP_C57BL6NJ_T0044648.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33108451 33224490 - MGP_C57BL6NJ_P0044648 protein_coding protein_coding MGP_C57BL6NJ_T0044649.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33108461 33488769 - MGP_C57BL6NJ_P0044649 protein_coding protein_coding MGP_C57BL6NJ_T0044650.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33108521 33224255 - MGP_C57BL6NJ_P0044650 protein_coding protein_coding MGP_C57BL6NJ_T0044651.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33109826 33224483 - MGP_C57BL6NJ_P0044651 protein_coding protein_coding MGP_C57BL6NJ_T0044652.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33109893 33488627 - MGP_C57BL6NJ_P0044652 protein_coding protein_coding MGP_C57BL6NJ_T0044653.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33134406 33224129 - MGP_C57BL6NJ_P0044653 protein_coding protein_coding MGP_C57BL6NJ_T0044654.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33178333 33224200 - protein_coding retained_intron MGP_C57BL6NJ_T0044655.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33203679 33213605 - protein_coding processed_transcript MGP_C57BL6NJ_T0044656.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33324442 33329119 - protein_coding processed_transcript MGP_C57BL6NJ_T0044657.1 MGP_C57BL6NJ_G0023177.1 mouse_genomes_project 16 33487441 33488798 - protein_coding processed_transcript MGP_C57BL6NJ_T0003806.1 MGP_C57BL6NJ_G0003434.1 mouse_genomes_project 16 11512221 11514395 + Gm15868 antisense antisense MGP_C57BL6NJ_T0044815.1 MGP_C57BL6NJ_G0023222.1 mouse_genomes_project 16 37604705 37650150 - MGP_C57BL6NJ_P0044815 Nr1i2 protein_coding protein_coding MGP_C57BL6NJ_T0101350.1 MGP_C57BL6NJ_G0039396.1 mouse_genomes_project 16 76977957 76978083 + Gm26307 snoRNA snoRNA MGP_C57BL6NJ_T0044834.1 MGP_C57BL6NJ_G0023230.1 mouse_genomes_project 16 37873630 37899461 - MGP_C57BL6NJ_P0044834 Timmdc1 protein_coding protein_coding MGP_C57BL6NJ_T0044835.1 MGP_C57BL6NJ_G0023230.1 mouse_genomes_project 16 37893458 37899439 - Timmdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043674.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 10996638 11077527 - MGP_C57BL6NJ_P0043674 Pdxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0043675.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 10997068 11005037 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043677.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 10998864 11010140 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043678.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 10998869 11077421 - MGP_C57BL6NJ_P0043678 Pdxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0043679.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 10998985 11001791 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043680.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11000301 11077382 - Pdxdc1 protein_coding retained_intron MGP_C57BL6NJ_T0043681.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11000516 11004046 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043682.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11001665 11005042 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043683.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11002342 11003071 - Pdxdc1 protein_coding retained_intron MGP_C57BL6NJ_T0043684.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11012422 11077455 - MGP_C57BL6NJ_P0043684 Pdxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0043685.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11013986 11077531 - MGP_C57BL6NJ_P0043685 Pdxdc1 protein_coding protein_coding MGP_C57BL6NJ_T0043686.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11024281 11047330 - Pdxdc1 protein_coding retained_intron MGP_C57BL6NJ_T0043687.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11047160 11077385 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043688.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11052791 11077375 - Pdxdc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043689.1 MGP_C57BL6NJ_G0022952.1 mouse_genomes_project 16 11059738 11077380 - Pdxdc1 protein_coding retained_intron MGP_C57BL6NJ_T0044877.1 MGP_C57BL6NJ_G0023239.1 mouse_genomes_project 16 41864765 41965158 - MGP_C57BL6NJ_P0044877 Gap43 protein_coding protein_coding MGP_C57BL6NJ_T0044878.1 MGP_C57BL6NJ_G0023239.1 mouse_genomes_project 16 41864781 41894022 - Gap43 protein_coding processed_transcript MGP_C57BL6NJ_T0013500.1 MGP_C57BL6NJ_G0011545.1 mouse_genomes_project 16 66359858 66360779 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045254.1 MGP_C57BL6NJ_G0023350.1 mouse_genomes_project 16 60541316 60570774 - MGP_C57BL6NJ_P0045254 Arl6 protein_coding protein_coding MGP_C57BL6NJ_T0045255.1 MGP_C57BL6NJ_G0023350.1 mouse_genomes_project 16 60541695 60570998 - MGP_C57BL6NJ_P0045255 Arl6 protein_coding protein_coding MGP_C57BL6NJ_T0045256.1 MGP_C57BL6NJ_G0023350.1 mouse_genomes_project 16 60541972 60564127 - MGP_C57BL6NJ_P0045256 Arl6 protein_coding protein_coding MGP_C57BL6NJ_T0045257.1 MGP_C57BL6NJ_G0023350.1 mouse_genomes_project 16 60549620 60570736 - MGP_C57BL6NJ_P0045257 Arl6 protein_coding protein_coding MGP_C57BL6NJ_T0101361.1 MGP_C57BL6NJ_G0039407.1 mouse_genomes_project 16 94527341 94527463 + Gm23406 snoRNA snoRNA MGP_C57BL6NJ_T0044338.1 MGP_C57BL6NJ_G0023099.1 mouse_genomes_project 16 21545123 21549951 + MGP_C57BL6NJ_P0044338 Rtp1 protein_coding protein_coding MGP_C57BL6NJ_T0001103.1 MGP_C57BL6NJ_G0001010.1 mouse_genomes_project 16 80237617 80240224 + TEC TEC MGP_C57BL6NJ_T0043466.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1620965 1626762 - MGP_C57BL6NJ_P0043466 Rogdi protein_coding protein_coding MGP_C57BL6NJ_T0043467.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1620965 1626772 - MGP_C57BL6NJ_P0043467 Rogdi protein_coding protein_coding MGP_C57BL6NJ_T0043468.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1620990 1626762 - MGP_C57BL6NJ_P0043468 Rogdi protein_coding protein_coding MGP_C57BL6NJ_T0043469.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1621220 1623915 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0043470.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1621459 1623372 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0043471.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1623161 1625075 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0043472.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1623298 1624995 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0043473.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1624110 1626730 - MGP_C57BL6NJ_P0043473 Rogdi protein_coding protein_coding MGP_C57BL6NJ_T0043474.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1624962 1626798 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0043475.1 MGP_C57BL6NJ_G0022897.1 mouse_genomes_project 16 1625414 1626781 - Rogdi protein_coding retained_intron MGP_C57BL6NJ_T0003828.1 MGP_C57BL6NJ_G0003451.1 mouse_genomes_project 16 36144900 36161804 - 4930565N06Rik antisense antisense MGP_C57BL6NJ_T0003824.1 MGP_C57BL6NJ_G0003449.1 mouse_genomes_project 16 33935355 33938831 - 1700119H24Rik antisense antisense MGP_C57BL6NJ_T0099352.1 MGP_C57BL6NJ_G0037411.1 mouse_genomes_project 16 11516454 11517666 - Gm15869 sense_intronic sense_intronic MGP_C57BL6NJ_T0045062.1 MGP_C57BL6NJ_G0023282.1 mouse_genomes_project 16 48912015 48913925 + MGP_C57BL6NJ_P0045062 Retnla protein_coding protein_coding MGP_C57BL6NJ_T0045524.1 MGP_C57BL6NJ_G0023455.1 mouse_genomes_project 16 95367319 95390679 + MGP_C57BL6NJ_P0045524 Ifnar2 protein_coding protein_coding MGP_C57BL6NJ_T0045525.1 MGP_C57BL6NJ_G0023455.1 mouse_genomes_project 16 95367328 95390856 + MGP_C57BL6NJ_P0045525 Ifnar2 protein_coding protein_coding MGP_C57BL6NJ_T0045526.1 MGP_C57BL6NJ_G0023455.1 mouse_genomes_project 16 95367417 95403604 + MGP_C57BL6NJ_P0045526 Ifnar2 protein_coding protein_coding MGP_C57BL6NJ_T0045527.1 MGP_C57BL6NJ_G0023455.1 mouse_genomes_project 16 95384604 95388592 + MGP_C57BL6NJ_P0045527 Ifnar2 protein_coding protein_coding MGP_C57BL6NJ_T0045128.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728206 56731298 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045129.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728211 56860559 + MGP_C57BL6NJ_P0045129 Senp7 protein_coding protein_coding MGP_C57BL6NJ_T0045130.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728211 56795357 + MGP_C57BL6NJ_P0045130 Senp7 protein_coding protein_coding MGP_C57BL6NJ_T0045131.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728266 56795352 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045132.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728270 56860560 + MGP_C57BL6NJ_P0045132 Senp7 protein_coding protein_coding MGP_C57BL6NJ_T0045133.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728277 56769408 + Senp7 protein_coding retained_intron MGP_C57BL6NJ_T0045134.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728277 56807580 + MGP_C57BL6NJ_P0045134 Senp7 protein_coding protein_coding MGP_C57BL6NJ_T0045135.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728282 56795233 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045136.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56728282 56810434 + MGP_C57BL6NJ_P0045136 Senp7 protein_coding protein_coding MGP_C57BL6NJ_T0045137.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56850562 56859278 + Senp7 protein_coding retained_intron MGP_C57BL6NJ_T0045138.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56851036 56858887 + Senp7 protein_coding retained_intron MGP_C57BL6NJ_T0045139.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56853021 56860532 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045140.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56854198 56858792 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045141.1 MGP_C57BL6NJ_G0023302.1 mouse_genomes_project 16 56856676 56859267 + Senp7 protein_coding processed_transcript MGP_C57BL6NJ_T0045632.1 MGP_C57BL6NJ_G0023475.1 mouse_genomes_project 16 96564417 96609927 + MGP_C57BL6NJ_P0045632 Clic6 protein_coding protein_coding MGP_C57BL6NJ_T0045633.1 MGP_C57BL6NJ_G0023475.1 mouse_genomes_project 16 96577946 96623352 + MGP_C57BL6NJ_P0045633 Clic6 protein_coding protein_coding MGP_C57BL6NJ_T0043776.1 MGP_C57BL6NJ_G0022978.1 mouse_genomes_project 16 14181830 14182333 - MGP_C57BL6NJ_P0043776 protein_coding protein_coding MGP_C57BL6NJ_T0043593.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8084372 8152254 - MGP_C57BL6NJ_P0043593 Txndc11 protein_coding protein_coding MGP_C57BL6NJ_T0043594.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8084886 8094247 - Txndc11 protein_coding retained_intron MGP_C57BL6NJ_T0043595.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8094213 8096814 - Txndc11 protein_coding processed_transcript MGP_C57BL6NJ_T0043596.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8094980 8152215 - MGP_C57BL6NJ_P0043596 Txndc11 protein_coding protein_coding MGP_C57BL6NJ_T0043597.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8096696 8152177 - MGP_C57BL6NJ_P0043597 Txndc11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043598.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8097733 8136778 - Txndc11 protein_coding processed_transcript MGP_C57BL6NJ_T0043599.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8114098 8152157 - MGP_C57BL6NJ_P0043599 Txndc11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043600.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8115444 8152254 - MGP_C57BL6NJ_P0043600 Txndc11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043601.1 MGP_C57BL6NJ_G0022935.1 mouse_genomes_project 16 8128122 8152217 - MGP_C57BL6NJ_P0043601 Txndc11 protein_coding protein_coding MGP_C57BL6NJ_T0101324.1 MGP_C57BL6NJ_G0039370.1 mouse_genomes_project 16 23071761 23071895 + Gm22672 snoRNA snoRNA MGP_C57BL6NJ_T0013462.1 MGP_C57BL6NJ_G0011507.1 mouse_genomes_project 16 21237648 21238102 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010379.1 MGP_C57BL6NJ_G0008464.1 mouse_genomes_project 16 95974139 95974217 - Gm27773 miRNA miRNA MGP_C57BL6NJ_T0043953.1 MGP_C57BL6NJ_G0023006.1 mouse_genomes_project 16 15208714 15219631 + MGP_C57BL6NJ_P0043953 Scarf2 protein_coding protein_coding MGP_C57BL6NJ_T0045224.1 MGP_C57BL6NJ_G0023332.1 mouse_genomes_project 16 59841497 59845467 - MGP_C57BL6NJ_P0045224 Olfr187 protein_coding protein_coding MGP_C57BL6NJ_T0045225.1 MGP_C57BL6NJ_G0023332.1 mouse_genomes_project 16 59841497 59842475 - MGP_C57BL6NJ_P0045225 Olfr187 protein_coding protein_coding MGP_C57BL6NJ_T0045226.1 MGP_C57BL6NJ_G0023332.1 mouse_genomes_project 16 59842022 59845485 - MGP_C57BL6NJ_P0045226 Olfr187 protein_coding protein_coding MGP_C57BL6NJ_T0043708.1 MGP_C57BL6NJ_G0022958.1 mouse_genomes_project 16 11392835 11490775 - MGP_C57BL6NJ_P0043708 Myh11 protein_coding protein_coding MGP_C57BL6NJ_T0043709.1 MGP_C57BL6NJ_G0022958.1 mouse_genomes_project 16 11393360 11477280 - MGP_C57BL6NJ_P0043709 Myh11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044983.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44860945 44861722 + Ccdc80 protein_coding processed_transcript MGP_C57BL6NJ_T0044984.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44860997 44862431 + Ccdc80 protein_coding processed_transcript MGP_C57BL6NJ_T0044985.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44861133 44861887 + Ccdc80 protein_coding processed_transcript MGP_C57BL6NJ_T0044986.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44861155 44898645 + MGP_C57BL6NJ_P0044986 Ccdc80 protein_coding protein_coding MGP_C57BL6NJ_T0044987.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44861218 44862697 + Ccdc80 protein_coding processed_transcript MGP_C57BL6NJ_T0044988.1 MGP_C57BL6NJ_G0023260.1 mouse_genomes_project 16 44861579 44898904 + MGP_C57BL6NJ_P0044988 Ccdc80 protein_coding protein_coding MGP_C57BL6NJ_T0043321.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 239915 246355 + Zfp263 protein_coding retained_intron MGP_C57BL6NJ_T0043322.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 239922 245459 + Zfp263 protein_coding processed_transcript MGP_C57BL6NJ_T0043323.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 239972 246355 + MGP_C57BL6NJ_P0043323 Zfp263 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043324.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 240100 244846 + Zfp263 protein_coding processed_transcript MGP_C57BL6NJ_T0043325.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 240115 245430 + MGP_C57BL6NJ_P0043325 Zfp263 protein_coding protein_coding MGP_C57BL6NJ_T0043326.1 MGP_C57BL6NJ_G0022864.1 mouse_genomes_project 16 240337 244671 + Zfp263 protein_coding processed_transcript MGP_C57BL6NJ_T0101343.1 MGP_C57BL6NJ_G0039389.1 mouse_genomes_project 16 58632434 58632566 - Gm24039 snoRNA snoRNA MGP_C57BL6NJ_T0013446.1 MGP_C57BL6NJ_G0011491.1 mouse_genomes_project 16 13124896 13125179 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0017951.1 MGP_C57BL6NJ_G0015705.1 mouse_genomes_project 16 15919060 15927682 + Gm15764 processed_transcript antisense MGP_C57BL6NJ_T0017952.1 MGP_C57BL6NJ_G0015705.1 mouse_genomes_project 16 15919263 15927051 + Gm15764 processed_transcript retained_intron MGP_C57BL6NJ_T0099030.1 MGP_C57BL6NJ_G0037094.1 mouse_genomes_project 16 31811630 31811749 + n-R5s33 rRNA rRNA MGP_C57BL6NJ_T0100054.1 MGP_C57BL6NJ_G0038100.1 mouse_genomes_project 16 75720678 75720845 - Gm25699 snRNA snRNA MGP_C57BL6NJ_T0006991.1 MGP_C57BL6NJ_G0005762.1 mouse_genomes_project 16 7906128 7908914 - Gm21859 lincRNA lincRNA MGP_C57BL6NJ_T0011667.1 MGP_C57BL6NJ_G0009752.1 mouse_genomes_project 16 18116108 18116383 + Gm23332 misc_RNA misc_RNA MGP_C57BL6NJ_T0010321.1 MGP_C57BL6NJ_G0008406.1 mouse_genomes_project 16 1837808 1837894 - Mir6364 miRNA miRNA MGP_C57BL6NJ_T0010343.1 MGP_C57BL6NJ_G0008428.1 mouse_genomes_project 16 20477543 20477672 - Mir8095 miRNA miRNA MGP_C57BL6NJ_T0003834.1 MGP_C57BL6NJ_G0003457.1 mouse_genomes_project 16 45764077 45767034 + Gm15640 antisense antisense MGP_C57BL6NJ_T0045106.1 MGP_C57BL6NJ_G0023294.1 mouse_genomes_project 16 55790513 55851709 - MGP_C57BL6NJ_P0045106 Zpld1 protein_coding protein_coding MGP_C57BL6NJ_T0045107.1 MGP_C57BL6NJ_G0023294.1 mouse_genomes_project 16 55790513 55869480 - MGP_C57BL6NJ_P0045107 Zpld1 protein_coding protein_coding MGP_C57BL6NJ_T0101336.1 MGP_C57BL6NJ_G0039382.1 mouse_genomes_project 16 46055641 46055773 + Gm26297 snoRNA snoRNA MGP_C57BL6NJ_T0045649.1 MGP_C57BL6NJ_G0023478.1 mouse_genomes_project 16 97803607 97808664 + MGP_C57BL6NJ_P0045649 Cbr1 protein_coding protein_coding MGP_C57BL6NJ_T0044725.1 MGP_C57BL6NJ_G0023204.1 mouse_genomes_project 16 35943414 35981910 + MGP_C57BL6NJ_P0044725 Ildr1 protein_coding protein_coding MGP_C57BL6NJ_T0044726.1 MGP_C57BL6NJ_G0023204.1 mouse_genomes_project 16 35943417 35981853 + MGP_C57BL6NJ_P0044726 Ildr1 protein_coding protein_coding MGP_C57BL6NJ_T0044727.1 MGP_C57BL6NJ_G0023204.1 mouse_genomes_project 16 35943469 35969516 + Ildr1 protein_coding retained_intron MGP_C57BL6NJ_T0044728.1 MGP_C57BL6NJ_G0023204.1 mouse_genomes_project 16 35943474 35981847 + MGP_C57BL6NJ_P0044728 Ildr1 protein_coding protein_coding MGP_C57BL6NJ_T0044729.1 MGP_C57BL6NJ_G0023204.1 mouse_genomes_project 16 35967660 35977366 + Ildr1 protein_coding retained_intron MGP_C57BL6NJ_T0102887.1 MGP_C57BL6NJ_G0040681.1 mouse_genomes_project 16 35245562 35248966 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045500.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94898254 94975880 - MGP_C57BL6NJ_P0045500 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045501.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94898263 94975667 - MGP_C57BL6NJ_P0045501 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045502.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94898268 94912498 - MGP_C57BL6NJ_P0045502 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045503.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94900402 94975685 - MGP_C57BL6NJ_P0045503 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045504.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94900819 94908734 - Synj1 protein_coding processed_transcript MGP_C57BL6NJ_T0045505.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94900965 94906950 - MGP_C57BL6NJ_P0045505 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045506.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94906554 94912503 - MGP_C57BL6NJ_P0045506 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045507.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94922554 94975633 - Synj1 protein_coding retained_intron MGP_C57BL6NJ_T0045508.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94928067 94975632 - MGP_C57BL6NJ_P0045508 Synj1 protein_coding protein_coding MGP_C57BL6NJ_T0045509.1 MGP_C57BL6NJ_G0023449.1 mouse_genomes_project 16 94973885 94975635 - Synj1 protein_coding retained_intron MGP_C57BL6NJ_T0044031.1 MGP_C57BL6NJ_G0023025.1 mouse_genomes_project 16 15906934 15915873 - MGP_C57BL6NJ_P0044031 Comt protein_coding protein_coding MGP_C57BL6NJ_T0044032.1 MGP_C57BL6NJ_G0023025.1 mouse_genomes_project 16 15909817 15934427 - MGP_C57BL6NJ_P0044032 Comt protein_coding protein_coding MGP_C57BL6NJ_T0044033.1 MGP_C57BL6NJ_G0023025.1 mouse_genomes_project 16 15909922 15933960 - MGP_C57BL6NJ_P0044033 Comt protein_coding protein_coding MGP_C57BL6NJ_T0044034.1 MGP_C57BL6NJ_G0023025.1 mouse_genomes_project 16 15913141 15915873 - MGP_C57BL6NJ_P0044034 Comt protein_coding protein_coding MGP_C57BL6NJ_T0045829.1 MGP_C57BL6NJ_G0023512.1 mouse_genomes_project 16 102405395 102482003 - MGP_C57BL6NJ_P0045829 C2cd2 protein_coding protein_coding MGP_C57BL6NJ_T0000049.1 MGP_C57BL6NJ_G0000040.1 mouse_genomes_project 16 16654839 16654877 - MGP_C57BL6NJ_P0000049 Iglj3 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0044169.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274211 18283205 + MGP_C57BL6NJ_P0044169 Vwa5b2 protein_coding protein_coding MGP_C57BL6NJ_T0044170.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274322 18275477 + Vwa5b2 protein_coding processed_transcript MGP_C57BL6NJ_T0044171.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274322 18290109 + MGP_C57BL6NJ_P0044171 Vwa5b2 protein_coding protein_coding MGP_C57BL6NJ_T0044172.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274324 18275927 + Vwa5b2 protein_coding processed_transcript MGP_C57BL6NJ_T0044173.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274591 18275961 + Vwa5b2 protein_coding retained_intron MGP_C57BL6NJ_T0044174.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274799 18275272 + Vwa5b2 protein_coding retained_intron MGP_C57BL6NJ_T0044175.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274830 18277130 + Vwa5b2 protein_coding retained_intron MGP_C57BL6NJ_T0044176.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274886 18283200 + MGP_C57BL6NJ_P0044176 Vwa5b2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044177.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18274922 18290115 + MGP_C57BL6NJ_P0044177 Vwa5b2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044178.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18275896 18290106 + MGP_C57BL6NJ_P0044178 Vwa5b2 protein_coding protein_coding MGP_C57BL6NJ_T0044179.1 MGP_C57BL6NJ_G0023063.1 mouse_genomes_project 16 18287512 18290109 + Vwa5b2 protein_coding retained_intron MGP_C57BL6NJ_T0045406.1 MGP_C57BL6NJ_G0023397.1 mouse_genomes_project 16 91141927 91185262 + MGP_C57BL6NJ_P0045406 Map3k7cl protein_coding protein_coding MGP_C57BL6NJ_T0099552.1 MGP_C57BL6NJ_G0037600.1 mouse_genomes_project 16 96557422 96577179 + 2410124H12Rik sense_overlapping sense_overlapping MGP_C57BL6NJ_T0045243.1 MGP_C57BL6NJ_G0023347.1 mouse_genomes_project 16 60302871 60376934 + MGP_C57BL6NJ_P0045243 Gabrr3 protein_coding protein_coding MGP_C57BL6NJ_T0045748.1 MGP_C57BL6NJ_G0023494.1 mouse_genomes_project 16 100107712 100128323 + MGP_C57BL6NJ_P0045748 Ets2 protein_coding protein_coding MGP_C57BL6NJ_T0045749.1 MGP_C57BL6NJ_G0023494.1 mouse_genomes_project 16 100108092 100115976 + Ets2 protein_coding retained_intron MGP_C57BL6NJ_T0045750.1 MGP_C57BL6NJ_G0023494.1 mouse_genomes_project 16 100108137 100118377 + Ets2 protein_coding retained_intron MGP_C57BL6NJ_T0045751.1 MGP_C57BL6NJ_G0023494.1 mouse_genomes_project 16 100111974 100123344 + MGP_C57BL6NJ_P0045751 Ets2 protein_coding protein_coding MGP_C57BL6NJ_T0045752.1 MGP_C57BL6NJ_G0023494.1 mouse_genomes_project 16 100123125 100126394 + Ets2 protein_coding retained_intron MGP_C57BL6NJ_T0010377.1 MGP_C57BL6NJ_G0008462.1 mouse_genomes_project 16 94915857 94915931 + Gm22933 miRNA miRNA MGP_C57BL6NJ_T0100058.1 MGP_C57BL6NJ_G0038104.1 mouse_genomes_project 16 91212438 91212545 - Gm22808 snRNA snRNA MGP_C57BL6NJ_T0001102.1 MGP_C57BL6NJ_G0001009.1 mouse_genomes_project 16 80176669 80179785 + TEC TEC MGP_C57BL6NJ_T0043748.1 MGP_C57BL6NJ_G0022972.1 mouse_genomes_project 16 13585053 13634730 - MGP_C57BL6NJ_P0043748 Dnm1l protein_coding protein_coding MGP_C57BL6NJ_T0043749.1 MGP_C57BL6NJ_G0022972.1 mouse_genomes_project 16 13585053 13634730 - MGP_C57BL6NJ_P0043749 Dnm1l protein_coding protein_coding MGP_C57BL6NJ_T0043750.1 MGP_C57BL6NJ_G0022972.1 mouse_genomes_project 16 13585053 13634730 - MGP_C57BL6NJ_P0043750 Dnm1l protein_coding protein_coding MGP_C57BL6NJ_T0043751.1 MGP_C57BL6NJ_G0022972.1 mouse_genomes_project 16 13586805 13634565 - MGP_C57BL6NJ_P0043751 Dnm1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044342.1 MGP_C57BL6NJ_G0023102.1 mouse_genomes_project 16 22025301 22026565 - MGP_C57BL6NJ_P0044342 Sst protein_coding protein_coding MGP_C57BL6NJ_T0000190.1 MGP_C57BL6NJ_G0000141.1 mouse_genomes_project 16 16836551 16837035 - MGP_C57BL6NJ_P0000190 Iglv3 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101318.1 MGP_C57BL6NJ_G0039364.1 mouse_genomes_project 16 18385064 18385139 + Snord66 snoRNA snoRNA MGP_C57BL6NJ_T0010351.1 MGP_C57BL6NJ_G0008436.1 mouse_genomes_project 16 31969208 31969293 + Mir1947 miRNA miRNA MGP_C57BL6NJ_T0044384.1 MGP_C57BL6NJ_G0023118.1 mouse_genomes_project 16 27222440 27327729 - MGP_C57BL6NJ_P0044384 Mb21d2 protein_coding protein_coding MGP_C57BL6NJ_T0043667.1 MGP_C57BL6NJ_G0022950.1 mouse_genomes_project 16 10941842 10978517 + MGP_C57BL6NJ_P0043667 Rrn3 protein_coding protein_coding MGP_C57BL6NJ_T0017967.1 MGP_C57BL6NJ_G0015715.1 mouse_genomes_project 16 68199554 68207061 + 1700010K23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0043991.1 MGP_C57BL6NJ_G0023020.1 mouse_genomes_project 16 15715616 15726015 - MGP_C57BL6NJ_P0043991 Ranbp1 protein_coding protein_coding MGP_C57BL6NJ_T0043992.1 MGP_C57BL6NJ_G0023020.1 mouse_genomes_project 16 15722421 15726099 - Ranbp1 protein_coding retained_intron MGP_C57BL6NJ_T0043993.1 MGP_C57BL6NJ_G0023020.1 mouse_genomes_project 16 15722657 15725887 - Ranbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0045232.1 MGP_C57BL6NJ_G0023337.1 mouse_genomes_project 16 60020210 60021140 - MGP_C57BL6NJ_P0045232 Olfr196 protein_coding protein_coding MGP_C57BL6NJ_T0043650.1 MGP_C57BL6NJ_G0022945.1 mouse_genomes_project 16 10377718 10547185 + MGP_C57BL6NJ_P0043650 Mkl2 protein_coding protein_coding MGP_C57BL6NJ_T0043651.1 MGP_C57BL6NJ_G0022945.1 mouse_genomes_project 16 10377743 10461155 + MGP_C57BL6NJ_P0043651 Mkl2 protein_coding protein_coding MGP_C57BL6NJ_T0043652.1 MGP_C57BL6NJ_G0022945.1 mouse_genomes_project 16 10386236 10461152 + MGP_C57BL6NJ_P0043652 Mkl2 protein_coding protein_coding MGP_C57BL6NJ_T0043653.1 MGP_C57BL6NJ_G0022945.1 mouse_genomes_project 16 10486656 10549471 + MGP_C57BL6NJ_P0043653 Mkl2 protein_coding protein_coding MGP_C57BL6NJ_T0101354.1 MGP_C57BL6NJ_G0039400.1 mouse_genomes_project 16 82999813 82999929 + Gm23083 snoRNA snoRNA MGP_C57BL6NJ_T0017993.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97480783 97496144 - 1810053B23Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017994.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97481226 97490692 - 1810053B23Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017995.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97481777 97491564 - 1810053B23Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017996.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97482246 97491574 - 1810053B23Rik processed_transcript lincRNA MGP_C57BL6NJ_T0017997.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97483559 97496975 - 1810053B23Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017998.1 MGP_C57BL6NJ_G0015724.1 mouse_genomes_project 16 97484299 97496943 - 1810053B23Rik processed_transcript retained_intron MGP_C57BL6NJ_T0044526.1 MGP_C57BL6NJ_G0023153.1 mouse_genomes_project 16 31124213 31131990 + MGP_C57BL6NJ_P0044526 Tm4sf19 protein_coding protein_coding MGP_C57BL6NJ_T0010335.1 MGP_C57BL6NJ_G0008420.1 mouse_genomes_project 16 15769335 15769414 - Mir1306 miRNA miRNA MGP_C57BL6NJ_T0045433.1 MGP_C57BL6NJ_G0023416.1 mouse_genomes_project 16 92580211 92580737 - MGP_C57BL6NJ_P0045433 Krtap19-3 protein_coding protein_coding MGP_C57BL6NJ_T0044525.1 MGP_C57BL6NJ_G0023152.1 mouse_genomes_project 16 31038236 31116493 + MGP_C57BL6NJ_P0044525 Ubxn7 protein_coding protein_coding MGP_C57BL6NJ_T0043956.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15256337 15320780 - protein_coding retained_intron MGP_C57BL6NJ_T0043957.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15257210 15320786 - MGP_C57BL6NJ_P0043957 protein_coding protein_coding MGP_C57BL6NJ_T0043958.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15257210 15320819 - MGP_C57BL6NJ_P0043958 protein_coding protein_coding MGP_C57BL6NJ_T0043959.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15257216 15320783 - MGP_C57BL6NJ_P0043959 protein_coding protein_coding MGP_C57BL6NJ_T0043960.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15258165 15320719 - MGP_C57BL6NJ_P0043960 protein_coding protein_coding MGP_C57BL6NJ_T0043961.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15266166 15320775 - protein_coding retained_intron MGP_C57BL6NJ_T0043962.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15275750 15323225 - protein_coding processed_transcript MGP_C57BL6NJ_T0043963.1 MGP_C57BL6NJ_G0023009.1 mouse_genomes_project 16 15321700 15323271 - protein_coding processed_transcript MGP_C57BL6NJ_T0101314.1 MGP_C57BL6NJ_G0039360.1 mouse_genomes_project 16 10662284 10662408 - Gm25276 snoRNA snoRNA MGP_C57BL6NJ_T0013436.1 MGP_C57BL6NJ_G0011481.1 mouse_genomes_project 16 6968551 6968758 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013477.1 MGP_C57BL6NJ_G0011522.1 mouse_genomes_project 16 36488502 36489349 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045814.1 MGP_C57BL6NJ_G0023508.1 mouse_genomes_project 16 102001516 102006755 - Fam3b protein_coding processed_transcript MGP_C57BL6NJ_T0045815.1 MGP_C57BL6NJ_G0023508.1 mouse_genomes_project 16 102001550 102033489 - MGP_C57BL6NJ_P0045815 Fam3b protein_coding protein_coding MGP_C57BL6NJ_T0017986.1 MGP_C57BL6NJ_G0015718.1 mouse_genomes_project 16 94975820 94981075 + 4930404I05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017987.1 MGP_C57BL6NJ_G0015718.1 mouse_genomes_project 16 94978292 94981315 + 4930404I05Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0003796.1 MGP_C57BL6NJ_G0003426.1 mouse_genomes_project 16 409201 413221 - antisense antisense MGP_C57BL6NJ_T0043335.1 MGP_C57BL6NJ_G0022869.1 mouse_genomes_project 16 364761 400985 + MGP_C57BL6NJ_P0043335 Gm20695 protein_coding protein_coding MGP_C57BL6NJ_T0043345.1 MGP_C57BL6NJ_G0022869.1 mouse_genomes_project 16 378093 400954 + Gm20695 protein_coding processed_transcript MGP_C57BL6NJ_T0043327.1 MGP_C57BL6NJ_G0022865.1 mouse_genomes_project 16 317917 318856 + MGP_C57BL6NJ_P0043327 Olfr15 protein_coding protein_coding MGP_C57BL6NJ_T0043668.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10982829 10995939 + Ntan1 protein_coding processed_transcript MGP_C57BL6NJ_T0043669.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10982851 10996056 + Ntan1 protein_coding processed_transcript MGP_C57BL6NJ_T0043670.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10982858 11000158 + Ntan1 protein_coding processed_transcript MGP_C57BL6NJ_T0043671.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10982896 10991046 + Ntan1 protein_coding retained_intron MGP_C57BL6NJ_T0043672.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10982908 11000024 + MGP_C57BL6NJ_P0043672 Ntan1 protein_coding protein_coding MGP_C57BL6NJ_T0043673.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10995111 10996202 + Ntan1 protein_coding retained_intron MGP_C57BL6NJ_T0043676.1 MGP_C57BL6NJ_G0022951.1 mouse_genomes_project 16 10998791 10999876 + Ntan1 protein_coding retained_intron MGP_C57BL6NJ_T0011679.1 MGP_C57BL6NJ_G0009764.1 mouse_genomes_project 16 97860900 97861178 + Gm22344 misc_RNA misc_RNA MGP_C57BL6NJ_T0003800.1 MGP_C57BL6NJ_G0003429.1 mouse_genomes_project 16 1620632 1626663 + Gm42477 antisense antisense MGP_C57BL6NJ_T0045682.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654581 98759178 + MGP_C57BL6NJ_P0045682 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045683.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654702 98730401 + MGP_C57BL6NJ_P0045683 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045684.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654706 98687777 + Ttc3 protein_coding retained_intron MGP_C57BL6NJ_T0045685.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654706 98722079 + MGP_C57BL6NJ_P0045685 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045686.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654709 98730406 + MGP_C57BL6NJ_P0045686 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045687.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654712 98702660 + MGP_C57BL6NJ_P0045687 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045688.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654713 98680317 + MGP_C57BL6NJ_P0045688 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045689.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654714 98700327 + Ttc3 protein_coding processed_transcript MGP_C57BL6NJ_T0045690.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654714 98702588 + MGP_C57BL6NJ_P0045690 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045691.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654714 98706263 + MGP_C57BL6NJ_P0045691 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045692.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654720 98730413 + MGP_C57BL6NJ_P0045692 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045693.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654730 98693681 + Ttc3 protein_coding processed_transcript MGP_C57BL6NJ_T0045694.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654730 98730403 + MGP_C57BL6NJ_P0045694 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045695.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654730 98674262 + MGP_C57BL6NJ_P0045695 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045696.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654730 98671333 + MGP_C57BL6NJ_P0045696 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045697.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654743 98699925 + MGP_C57BL6NJ_P0045697 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045698.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654744 98730413 + MGP_C57BL6NJ_P0045698 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045699.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654744 98730413 + MGP_C57BL6NJ_P0045699 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045700.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654759 98711832 + MGP_C57BL6NJ_P0045700 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045701.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654760 98694811 + MGP_C57BL6NJ_P0045701 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045702.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654760 98687313 + MGP_C57BL6NJ_P0045702 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045703.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654761 98696076 + Ttc3 protein_coding processed_transcript MGP_C57BL6NJ_T0045704.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654761 98680561 + MGP_C57BL6NJ_P0045704 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045705.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98654786 98704247 + MGP_C57BL6NJ_P0045705 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045706.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98709114 98720888 + MGP_C57BL6NJ_P0045706 Ttc3 protein_coding protein_coding MGP_C57BL6NJ_T0045707.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98727826 98737374 + Ttc3 protein_coding retained_intron MGP_C57BL6NJ_T0045708.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98739749 98748701 + MGP_C57BL6NJ_P0045708 Ttc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045709.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98746020 98757950 + Ttc3 protein_coding retained_intron MGP_C57BL6NJ_T0045710.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98755289 98758841 + Ttc3 protein_coding retained_intron MGP_C57BL6NJ_T0045711.1 MGP_C57BL6NJ_G0023488.1 mouse_genomes_project 16 98756528 98758173 + Ttc3 protein_coding retained_intron MGP_C57BL6NJ_T0101322.1 MGP_C57BL6NJ_G0039368.1 mouse_genomes_project 16 21172891 21174816 + Snora81 snoRNA snoRNA MGP_C57BL6NJ_T0043910.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017244 15045318 + MGP_C57BL6NJ_P0043910 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043911.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017247 15039765 + Smpd4 protein_coding processed_transcript MGP_C57BL6NJ_T0043912.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017247 15045317 + MGP_C57BL6NJ_P0043912 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043913.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017247 15025001 + MGP_C57BL6NJ_P0043913 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043914.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017250 15043837 + MGP_C57BL6NJ_P0043914 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043915.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017250 15025203 + MGP_C57BL6NJ_P0043915 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043916.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017253 15022839 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0043917.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017253 15045317 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0043918.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017253 15019886 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0043919.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017253 15024395 + MGP_C57BL6NJ_P0043919 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043920.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017253 15045317 + MGP_C57BL6NJ_P0043920 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043921.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017264 15039015 + MGP_C57BL6NJ_P0043921 Smpd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043922.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017267 15025240 + MGP_C57BL6NJ_P0043922 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043923.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017271 15042638 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0043924.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017279 15024559 + MGP_C57BL6NJ_P0043924 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043925.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15017407 15022501 + MGP_C57BL6NJ_P0043925 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043926.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15019377 15043293 + MGP_C57BL6NJ_P0043926 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043927.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15019377 15043293 + MGP_C57BL6NJ_P0043927 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043928.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15019377 15043293 + MGP_C57BL6NJ_P0043928 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043929.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15019377 15043293 + MGP_C57BL6NJ_P0043929 Smpd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043930.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15019377 15043293 + MGP_C57BL6NJ_P0043930 Smpd4 protein_coding protein_coding MGP_C57BL6NJ_T0043931.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15038811 15041552 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0043932.1 MGP_C57BL6NJ_G0023002.1 mouse_genomes_project 16 15039076 15041456 + Smpd4 protein_coding retained_intron MGP_C57BL6NJ_T0044153.1 MGP_C57BL6NJ_G0023060.1 mouse_genomes_project 16 18200050 18214584 + MGP_C57BL6NJ_P0044153 Dvl3 protein_coding protein_coding MGP_C57BL6NJ_T0044154.1 MGP_C57BL6NJ_G0023060.1 mouse_genomes_project 16 18200132 18215454 + MGP_C57BL6NJ_P0044154 Dvl3 protein_coding protein_coding MGP_C57BL6NJ_T0044155.1 MGP_C57BL6NJ_G0023060.1 mouse_genomes_project 16 18200174 18214580 + MGP_C57BL6NJ_P0044155 Dvl3 protein_coding protein_coding MGP_C57BL6NJ_T0044156.1 MGP_C57BL6NJ_G0023060.1 mouse_genomes_project 16 18200254 18208309 + Dvl3 protein_coding retained_intron MGP_C57BL6NJ_T0043739.1 MGP_C57BL6NJ_G0022969.1 mouse_genomes_project 16 13142223 13414120 - MGP_C57BL6NJ_P0043739 Spidr protein_coding protein_coding MGP_C57BL6NJ_T0044711.1 MGP_C57BL6NJ_G0023197.1 mouse_genomes_project 16 35422875 35427159 + MGP_C57BL6NJ_P0044711 2010005H15Rik protein_coding protein_coding MGP_C57BL6NJ_T0044712.1 MGP_C57BL6NJ_G0023197.1 mouse_genomes_project 16 35422907 35427104 + MGP_C57BL6NJ_P0044712 2010005H15Rik protein_coding protein_coding MGP_C57BL6NJ_T0045127.1 MGP_C57BL6NJ_G0023301.1 mouse_genomes_project 16 56679959 56685170 - MGP_C57BL6NJ_P0045127 Trmt10c protein_coding protein_coding MGP_C57BL6NJ_T0099033.1 MGP_C57BL6NJ_G0037097.1 mouse_genomes_project 16 48450759 48450878 - n-R5s36 rRNA rRNA MGP_C57BL6NJ_T0102601.1 MGP_C57BL6NJ_G0040414.1 mouse_genomes_project 16 18104707 18113838 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0044589.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706934 31827426 + MGP_C57BL6NJ_P0044589 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044590.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706956 31824922 + MGP_C57BL6NJ_P0044590 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044591.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706956 31824922 + MGP_C57BL6NJ_P0044591 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044592.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706957 31795976 + Lrch3 protein_coding retained_intron MGP_C57BL6NJ_T0044593.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706961 31780861 + MGP_C57BL6NJ_P0044593 Lrch3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044594.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706976 31824478 + MGP_C57BL6NJ_P0044594 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044595.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31706976 31824269 + MGP_C57BL6NJ_P0044595 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044596.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31758570 31765570 + Lrch3 protein_coding processed_transcript MGP_C57BL6NJ_T0044597.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31786326 31806759 + MGP_C57BL6NJ_P0044597 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044598.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31786354 31806701 + MGP_C57BL6NJ_P0044598 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044599.1 MGP_C57BL6NJ_G0023165.1 mouse_genomes_project 16 31792932 31806812 + MGP_C57BL6NJ_P0044599 Lrch3 protein_coding protein_coding MGP_C57BL6NJ_T0044534.1 MGP_C57BL6NJ_G0023157.1 mouse_genomes_project 16 31228079 31240825 + MGP_C57BL6NJ_P0044534 Zdhhc19 protein_coding protein_coding MGP_C57BL6NJ_T0044535.1 MGP_C57BL6NJ_G0023157.1 mouse_genomes_project 16 31231443 31298354 + Zdhhc19 protein_coding processed_transcript MGP_C57BL6NJ_T0044542.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31394133 31423193 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044543.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31394550 31418802 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044544.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31394902 31438205 + MGP_C57BL6NJ_P0044544 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044545.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31394902 31438205 + MGP_C57BL6NJ_P0044545 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044546.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31394932 31438205 + MGP_C57BL6NJ_P0044546 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044547.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31395085 31438204 + MGP_C57BL6NJ_P0044547 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044548.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31395218 31423206 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044549.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31412129 31423185 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044550.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31413838 31423177 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044551.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31423153 31426545 + Tnk2 protein_coding processed_transcript MGP_C57BL6NJ_T0044552.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428064 31434207 + MGP_C57BL6NJ_P0044552 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044553.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428066 31438205 + MGP_C57BL6NJ_P0044553 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044554.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428088 31434421 + MGP_C57BL6NJ_P0044554 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044555.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428102 31434874 + MGP_C57BL6NJ_P0044555 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0044556.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428105 31433805 + Tnk2 protein_coding retained_intron MGP_C57BL6NJ_T0044557.1 MGP_C57BL6NJ_G0023159.1 mouse_genomes_project 16 31428109 31434623 + MGP_C57BL6NJ_P0044557 Tnk2 protein_coding protein_coding MGP_C57BL6NJ_T0010344.1 MGP_C57BL6NJ_G0008429.1 mouse_genomes_project 16 20550958 20551065 + Mir6362 miRNA miRNA MGP_C57BL6NJ_T0013437.1 MGP_C57BL6NJ_G0011482.1 mouse_genomes_project 16 8205068 8206035 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044324.1 MGP_C57BL6NJ_G0023095.1 mouse_genomes_project 16 21160402 21177895 - MGP_C57BL6NJ_P0044324 Rfc4 protein_coding protein_coding MGP_C57BL6NJ_T0044325.1 MGP_C57BL6NJ_G0023095.1 mouse_genomes_project 16 21160410 21177875 - MGP_C57BL6NJ_P0044325 Rfc4 protein_coding protein_coding MGP_C57BL6NJ_T0044326.1 MGP_C57BL6NJ_G0023095.1 mouse_genomes_project 16 21160454 21161204 - Rfc4 protein_coding retained_intron MGP_C57BL6NJ_T0044327.1 MGP_C57BL6NJ_G0023095.1 mouse_genomes_project 16 21161166 21177849 - MGP_C57BL6NJ_P0044327 Rfc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044328.1 MGP_C57BL6NJ_G0023095.1 mouse_genomes_project 16 21167366 21177886 - MGP_C57BL6NJ_P0044328 Rfc4 protein_coding protein_coding MGP_C57BL6NJ_T0043656.1 MGP_C57BL6NJ_G0022948.1 mouse_genomes_project 16 10819397 10825874 + MGP_C57BL6NJ_P0043656 3110001I22Rik protein_coding protein_coding MGP_C57BL6NJ_T0044190.1 MGP_C57BL6NJ_G0023066.1 mouse_genomes_project 16 18304329 18306402 - MGP_C57BL6NJ_P0044190 Camk2n2 protein_coding protein_coding MGP_C57BL6NJ_T0102884.1 MGP_C57BL6NJ_G0040678.1 mouse_genomes_project 16 11090445 11092418 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0043654.1 MGP_C57BL6NJ_G0022946.1 mouse_genomes_project 16 10669457 10815639 - MGP_C57BL6NJ_P0043654 Parn protein_coding protein_coding MGP_C57BL6NJ_T0044109.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17369685 17381710 + MGP_C57BL6NJ_P0044109 B3gnt5 protein_coding protein_coding MGP_C57BL6NJ_T0044110.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17369711 17382230 + MGP_C57BL6NJ_P0044110 B3gnt5 protein_coding protein_coding MGP_C57BL6NJ_T0044111.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17369711 17381940 + MGP_C57BL6NJ_P0044111 B3gnt5 protein_coding protein_coding MGP_C57BL6NJ_T0044112.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17369876 17375099 + B3gnt5 protein_coding processed_transcript MGP_C57BL6NJ_T0044113.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17370063 17378315 + B3gnt5 protein_coding retained_intron MGP_C57BL6NJ_T0044114.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17370064 17373833 + B3gnt5 protein_coding retained_intron MGP_C57BL6NJ_T0044115.1 MGP_C57BL6NJ_G0023050.1 mouse_genomes_project 16 17370531 17380101 + MGP_C57BL6NJ_P0044115 B3gnt5 protein_coding protein_coding MGP_C57BL6NJ_T0001093.1 MGP_C57BL6NJ_G0001001.1 mouse_genomes_project 16 79988199 79988851 + TEC TEC MGP_C57BL6NJ_T0100014.1 MGP_C57BL6NJ_G0038060.1 mouse_genomes_project 16 7995759 7995943 + Gm24961 snRNA snRNA MGP_C57BL6NJ_T0045494.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94886460 94896990 - MGP_C57BL6NJ_P0045494 1110004E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045495.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94886604 94890635 - MGP_C57BL6NJ_P0045495 1110004E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045496.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94886621 94897090 - MGP_C57BL6NJ_P0045496 1110004E09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045497.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94887770 94896886 - MGP_C57BL6NJ_P0045497 1110004E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045498.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94887833 94896669 - MGP_C57BL6NJ_P0045498 1110004E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045499.1 MGP_C57BL6NJ_G0023448.1 mouse_genomes_project 16 94888031 94896989 - 1110004E09Rik protein_coding processed_transcript MGP_C57BL6NJ_T0045182.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59254508 59316953 - MGP_C57BL6NJ_P0045182 St3gal6 protein_coding protein_coding MGP_C57BL6NJ_T0045183.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59256136 59317770 - MGP_C57BL6NJ_P0045183 St3gal6 protein_coding protein_coding MGP_C57BL6NJ_T0045184.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59256595 59317712 - MGP_C57BL6NJ_P0045184 St3gal6 protein_coding protein_coding MGP_C57BL6NJ_T0045185.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59262236 59317080 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045186.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59272800 59275805 - St3gal6 protein_coding retained_intron MGP_C57BL6NJ_T0045187.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59275298 59316971 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045188.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59275311 59317696 - MGP_C57BL6NJ_P0045188 St3gal6 protein_coding protein_coding MGP_C57BL6NJ_T0045189.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59280070 59317696 - MGP_C57BL6NJ_P0045189 St3gal6 protein_coding protein_coding MGP_C57BL6NJ_T0045190.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59280122 59286942 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045191.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59280124 59316871 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045192.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59280133 59317661 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045193.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59280133 59317251 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045194.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59290461 59317285 - St3gal6 protein_coding processed_transcript MGP_C57BL6NJ_T0045195.1 MGP_C57BL6NJ_G0023317.1 mouse_genomes_project 16 59290461 59295516 - St3gal6 protein_coding retained_intron MGP_C57BL6NJ_T0102886.1 MGP_C57BL6NJ_G0040680.1 mouse_genomes_project 16 20993269 21028476 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0044661.1 MGP_C57BL6NJ_G0023180.1 mouse_genomes_project 16 33737051 33882572 + Mylk protein_coding retained_intron MGP_C57BL6NJ_T0044662.1 MGP_C57BL6NJ_G0023180.1 mouse_genomes_project 16 33781002 34007158 + MGP_C57BL6NJ_P0044662 Mylk protein_coding protein_coding MGP_C57BL6NJ_T0045070.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49087812 49113324 + MGP_C57BL6NJ_P0045070 C330027C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045071.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49087815 49113324 + MGP_C57BL6NJ_P0045071 C330027C09Rik protein_coding protein_coding MGP_C57BL6NJ_T0045072.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49087850 49094692 + MGP_C57BL6NJ_P0045072 C330027C09Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045073.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49094470 49095673 + C330027C09Rik protein_coding retained_intron MGP_C57BL6NJ_T0045074.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49102029 49113270 + C330027C09Rik protein_coding retained_intron MGP_C57BL6NJ_T0045075.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49104048 49106909 + C330027C09Rik protein_coding retained_intron MGP_C57BL6NJ_T0045076.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49106913 49107968 + C330027C09Rik protein_coding retained_intron MGP_C57BL6NJ_T0045077.1 MGP_C57BL6NJ_G0023285.1 mouse_genomes_project 16 49109455 49113328 + C330027C09Rik protein_coding retained_intron MGP_C57BL6NJ_T0045447.1 MGP_C57BL6NJ_G0023429.1 mouse_genomes_project 16 92875141 92875630 + MGP_C57BL6NJ_P0045447 Gm6358 protein_coding protein_coding MGP_C57BL6NJ_T0045448.1 MGP_C57BL6NJ_G0023429.1 mouse_genomes_project 16 92875234 92875390 + MGP_C57BL6NJ_P0045448 Gm6358 protein_coding protein_coding MGP_C57BL6NJ_T0006996.1 MGP_C57BL6NJ_G0005767.1 mouse_genomes_project 16 10644999 10651288 - 2310015D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0006997.1 MGP_C57BL6NJ_G0005767.1 mouse_genomes_project 16 10650061 10651976 - 2310015D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0043724.1 MGP_C57BL6NJ_G0022962.1 mouse_genomes_project 16 11804501 11879374 + MGP_C57BL6NJ_P0043724 A630010A05Rik protein_coding protein_coding MGP_C57BL6NJ_T0043725.1 MGP_C57BL6NJ_G0022962.1 mouse_genomes_project 16 11829546 11879396 + MGP_C57BL6NJ_P0043725 A630010A05Rik protein_coding protein_coding MGP_C57BL6NJ_T0043726.1 MGP_C57BL6NJ_G0022962.1 mouse_genomes_project 16 11836337 11879382 + MGP_C57BL6NJ_P0043726 A630010A05Rik protein_coding protein_coding MGP_C57BL6NJ_T0045020.1 MGP_C57BL6NJ_G0023269.1 mouse_genomes_project 16 45459178 45496560 - MGP_C57BL6NJ_P0045020 Tmprss7 protein_coding protein_coding MGP_C57BL6NJ_T0045021.1 MGP_C57BL6NJ_G0023269.1 mouse_genomes_project 16 45459180 45488327 - Tmprss7 protein_coding processed_transcript MGP_C57BL6NJ_T0045022.1 MGP_C57BL6NJ_G0023269.1 mouse_genomes_project 16 45459204 45492512 - Tmprss7 protein_coding processed_transcript MGP_C57BL6NJ_T0045023.1 MGP_C57BL6NJ_G0023269.1 mouse_genomes_project 16 45486359 45489446 - Tmprss7 protein_coding processed_transcript MGP_C57BL6NJ_T0045024.1 MGP_C57BL6NJ_G0023269.1 mouse_genomes_project 16 45486473 45489451 - Tmprss7 protein_coding retained_intron MGP_C57BL6NJ_T0045543.1 MGP_C57BL6NJ_G0023460.1 mouse_genomes_project 16 95587791 95616216 - MGP_C57BL6NJ_P0045543 Tmem50b protein_coding protein_coding MGP_C57BL6NJ_T0045544.1 MGP_C57BL6NJ_G0023460.1 mouse_genomes_project 16 95589046 95616080 - MGP_C57BL6NJ_P0045544 Tmem50b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045545.1 MGP_C57BL6NJ_G0023460.1 mouse_genomes_project 16 95593490 95616216 - MGP_C57BL6NJ_P0045545 Tmem50b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043549.1 MGP_C57BL6NJ_G0022919.1 mouse_genomes_project 16 7217972 7253123 - MGP_C57BL6NJ_P0043549 Emp2 protein_coding protein_coding MGP_C57BL6NJ_T0100026.1 MGP_C57BL6NJ_G0038072.1 mouse_genomes_project 16 22579924 22579987 - Gm24440 snRNA snRNA MGP_C57BL6NJ_T0099036.1 MGP_C57BL6NJ_G0037100.1 mouse_genomes_project 16 102027714 102027821 - Gm24777 rRNA rRNA MGP_C57BL6NJ_T0045019.1 MGP_C57BL6NJ_G0023268.1 mouse_genomes_project 16 45430001 45456982 - MGP_C57BL6NJ_P0045019 BC016579 protein_coding protein_coding MGP_C57BL6NJ_T0044413.1 MGP_C57BL6NJ_G0023124.1 mouse_genomes_project 16 28531574 28532760 + Hes1 protein_coding processed_transcript MGP_C57BL6NJ_T0044414.1 MGP_C57BL6NJ_G0023124.1 mouse_genomes_project 16 28532530 28534987 + MGP_C57BL6NJ_P0044414 Hes1 protein_coding protein_coding MGP_C57BL6NJ_T0044415.1 MGP_C57BL6NJ_G0023124.1 mouse_genomes_project 16 28533287 28534314 + Hes1 protein_coding retained_intron MGP_C57BL6NJ_T0044416.1 MGP_C57BL6NJ_G0023124.1 mouse_genomes_project 16 28533528 28534510 + Hes1 protein_coding processed_transcript MGP_C57BL6NJ_T0043522.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5507621 5625713 - MGP_C57BL6NJ_P0043522 Usp7 protein_coding protein_coding MGP_C57BL6NJ_T0043523.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5507626 5557084 - MGP_C57BL6NJ_P0043523 Usp7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043524.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5508172 5557084 - MGP_C57BL6NJ_P0043524 Usp7 protein_coding protein_coding MGP_C57BL6NJ_T0043525.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5508806 5539673 - Usp7 protein_coding processed_transcript MGP_C57BL6NJ_T0043526.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5514203 5516857 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043527.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5514703 5515608 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043528.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5515502 5516559 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043529.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5515677 5524746 - MGP_C57BL6NJ_P0043529 Usp7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043530.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5518183 5521798 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043531.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5521482 5524944 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043532.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5522961 5523326 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043533.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5522970 5524236 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0043534.1 MGP_C57BL6NJ_G0022914.1 mouse_genomes_project 16 5523976 5524845 - Usp7 protein_coding retained_intron MGP_C57BL6NJ_T0098832.1 MGP_C57BL6NJ_G0036896.1 mouse_genomes_project 16 50052501 50054210 + pseudogene pseudogene MGP_C57BL6NJ_T0000048.1 MGP_C57BL6NJ_G0000039.1 mouse_genomes_project 16 16654169 16654207 - MGP_C57BL6NJ_P0000048 Iglj3p IG_J_gene IG_J_gene MGP_C57BL6NJ_T0044956.1 MGP_C57BL6NJ_G0023253.1 mouse_genomes_project 16 44223827 44298381 - MGP_C57BL6NJ_P0044956 Boc protein_coding protein_coding MGP_C57BL6NJ_T0044957.1 MGP_C57BL6NJ_G0023253.1 mouse_genomes_project 16 44223831 44298408 - MGP_C57BL6NJ_P0044957 Boc protein_coding protein_coding MGP_C57BL6NJ_T0044958.1 MGP_C57BL6NJ_G0023253.1 mouse_genomes_project 16 44223834 44259920 - MGP_C57BL6NJ_P0044958 Boc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044185.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18296324 18304122 + MGP_C57BL6NJ_P0044185 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044186.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18296332 18332566 + MGP_C57BL6NJ_P0044186 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044187.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18296332 18303984 + MGP_C57BL6NJ_P0044187 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044188.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18296341 18332571 + MGP_C57BL6NJ_P0044188 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044189.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18296525 18332566 + MGP_C57BL6NJ_P0044189 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044191.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18314921 18332566 + MGP_C57BL6NJ_P0044191 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044192.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18314938 18329685 + Ece2 protein_coding retained_intron MGP_C57BL6NJ_T0044193.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18314938 18333127 + MGP_C57BL6NJ_P0044193 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044194.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18314944 18332566 + MGP_C57BL6NJ_P0044194 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0044195.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18316238 18324608 + Ece2 protein_coding retained_intron MGP_C57BL6NJ_T0044196.1 MGP_C57BL6NJ_G0023065.1 mouse_genomes_project 16 18317963 18333136 + MGP_C57BL6NJ_P0044196 Ece2 protein_coding protein_coding MGP_C57BL6NJ_T0043500.1 MGP_C57BL6NJ_G0022908.1 mouse_genomes_project 16 5257888 5278199 + MGP_C57BL6NJ_P0043500 Mettl22 protein_coding protein_coding MGP_C57BL6NJ_T0043501.1 MGP_C57BL6NJ_G0022908.1 mouse_genomes_project 16 5257891 5276197 + MGP_C57BL6NJ_P0043501 Mettl22 protein_coding protein_coding MGP_C57BL6NJ_T0043502.1 MGP_C57BL6NJ_G0022908.1 mouse_genomes_project 16 5257904 5271846 + MGP_C57BL6NJ_P0043502 Mettl22 protein_coding protein_coding MGP_C57BL6NJ_T0043503.1 MGP_C57BL6NJ_G0022908.1 mouse_genomes_project 16 5273080 5276358 + Mettl22 protein_coding retained_intron MGP_C57BL6NJ_T0043504.1 MGP_C57BL6NJ_G0022908.1 mouse_genomes_project 16 5274348 5277711 + Mettl22 protein_coding retained_intron MGP_C57BL6NJ_T0010342.1 MGP_C57BL6NJ_G0008427.1 mouse_genomes_project 16 19046444 19046498 - Mir7680 miRNA miRNA MGP_C57BL6NJ_T0045164.1 MGP_C57BL6NJ_G0023310.1 mouse_genomes_project 16 57869572 57881817 - MGP_C57BL6NJ_P0045164 Nit2 protein_coding protein_coding MGP_C57BL6NJ_T0045458.1 MGP_C57BL6NJ_G0023439.1 mouse_genomes_project 16 93384456 93385464 - MGP_C57BL6NJ_P0045458 Krtap11-1 protein_coding protein_coding MGP_C57BL6NJ_T0043858.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650153 14787610 - MGP_C57BL6NJ_P0043858 Pi4ka protein_coding protein_coding MGP_C57BL6NJ_T0043859.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650154 14651444 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0043860.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650154 14654762 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0043861.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650154 14681063 - MGP_C57BL6NJ_P0043861 Pi4ka protein_coding protein_coding MGP_C57BL6NJ_T0043862.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650154 14787189 - MGP_C57BL6NJ_P0043862 Pi4ka protein_coding protein_coding MGP_C57BL6NJ_T0043863.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14650155 14651874 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0043864.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14652620 14653924 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0043865.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14670539 14680686 - MGP_C57BL6NJ_P0043865 Pi4ka protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043866.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14681174 14699263 - MGP_C57BL6NJ_P0043866 Pi4ka protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043867.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14685363 14724629 - MGP_C57BL6NJ_P0043867 Pi4ka protein_coding protein_coding MGP_C57BL6NJ_T0043868.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14696745 14724591 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0043871.1 MGP_C57BL6NJ_G0022992.1 mouse_genomes_project 16 14739178 14787189 - Pi4ka protein_coding retained_intron MGP_C57BL6NJ_T0013489.1 MGP_C57BL6NJ_G0011534.1 mouse_genomes_project 16 46959600 46968256 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045044.1 MGP_C57BL6NJ_G0023274.1 mouse_genomes_project 16 45864898 45949040 - MGP_C57BL6NJ_P0045044 Cd96 protein_coding protein_coding MGP_C57BL6NJ_T0045262.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 63987607 64050938 - MGP_C57BL6NJ_P0045262 Nsun3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045263.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 63987607 64050938 - MGP_C57BL6NJ_P0045263 Nsun3 protein_coding protein_coding MGP_C57BL6NJ_T0045264.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 63990323 64031284 - Nsun3 protein_coding processed_transcript MGP_C57BL6NJ_T0045265.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 64034852 64050927 - MGP_C57BL6NJ_P0045265 Nsun3 protein_coding protein_coding MGP_C57BL6NJ_T0045266.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 64040326 64050979 - Nsun3 protein_coding processed_transcript MGP_C57BL6NJ_T0045267.1 MGP_C57BL6NJ_G0023352.1 mouse_genomes_project 16 64043411 64050874 - Nsun3 protein_coding processed_transcript MGP_C57BL6NJ_T0043355.1 MGP_C57BL6NJ_G0022872.1 mouse_genomes_project 16 433768 468863 - MGP_C57BL6NJ_P0043355 Nlrc3 protein_coding protein_coding MGP_C57BL6NJ_T0043356.1 MGP_C57BL6NJ_G0022872.1 mouse_genomes_project 16 437109 468608 - MGP_C57BL6NJ_P0043356 Nlrc3 protein_coding protein_coding MGP_C57BL6NJ_T0043357.1 MGP_C57BL6NJ_G0022872.1 mouse_genomes_project 16 438530 468863 - Nlrc3 protein_coding retained_intron MGP_C57BL6NJ_T0043358.1 MGP_C57BL6NJ_G0022872.1 mouse_genomes_project 16 438539 454720 - Nlrc3 protein_coding retained_intron MGP_C57BL6NJ_T0044716.1 MGP_C57BL6NJ_G0023201.1 mouse_genomes_project 16 35665485 35670306 - MGP_C57BL6NJ_P0044716 Stfa3 protein_coding protein_coding MGP_C57BL6NJ_T0043334.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 352607 380672 + MGP_C57BL6NJ_P0043334 Naa60 protein_coding protein_coding MGP_C57BL6NJ_T0043336.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 364781 377209 + MGP_C57BL6NJ_P0043336 Naa60 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043337.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 364796 383610 + MGP_C57BL6NJ_P0043337 Naa60 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043338.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 364799 377240 + MGP_C57BL6NJ_P0043338 Naa60 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043339.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 364813 384634 + MGP_C57BL6NJ_P0043339 Naa60 protein_coding protein_coding MGP_C57BL6NJ_T0043340.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 364826 380261 + Naa60 protein_coding retained_intron MGP_C57BL6NJ_T0043341.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 374235 381800 + MGP_C57BL6NJ_P0043341 Naa60 protein_coding protein_coding MGP_C57BL6NJ_T0043342.1 MGP_C57BL6NJ_G0022868.1 mouse_genomes_project 16 374235 381675 + MGP_C57BL6NJ_P0043342 Naa60 protein_coding protein_coding MGP_C57BL6NJ_T0001090.1 MGP_C57BL6NJ_G0000998.1 mouse_genomes_project 16 58651207 58651617 + TEC TEC MGP_C57BL6NJ_T0013509.1 MGP_C57BL6NJ_G0011554.1 mouse_genomes_project 16 82760956 82761386 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098837.1 MGP_C57BL6NJ_G0036901.1 mouse_genomes_project 16 92666972 92667208 - pseudogene pseudogene MGP_C57BL6NJ_T0045478.1 MGP_C57BL6NJ_G0023445.1 mouse_genomes_project 16 94681149 94694869 + Mrap protein_coding processed_transcript MGP_C57BL6NJ_T0045479.1 MGP_C57BL6NJ_G0023445.1 mouse_genomes_project 16 94681149 94698115 + Mrap protein_coding processed_transcript MGP_C57BL6NJ_T0045480.1 MGP_C57BL6NJ_G0023445.1 mouse_genomes_project 16 94681149 94697626 + Mrap protein_coding processed_transcript MGP_C57BL6NJ_T0045481.1 MGP_C57BL6NJ_G0023445.1 mouse_genomes_project 16 94681149 94698115 + MGP_C57BL6NJ_P0045481 Mrap protein_coding protein_coding MGP_C57BL6NJ_T0043409.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1206566 1266584 - MGP_C57BL6NJ_P0043409 Coro7 protein_coding protein_coding MGP_C57BL6NJ_T0043410.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1207810 1209305 - Coro7 protein_coding processed_transcript MGP_C57BL6NJ_T0043411.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1209185 1210100 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043412.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1209492 1266485 - MGP_C57BL6NJ_P0043412 Coro7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043413.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1212311 1214293 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043414.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1212679 1215469 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043415.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1213710 1228497 - Coro7 protein_coding processed_transcript MGP_C57BL6NJ_T0043416.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1213757 1215475 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043417.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1215031 1246553 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043421.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1234346 1266584 - MGP_C57BL6NJ_P0043421 Coro7 protein_coding protein_coding MGP_C57BL6NJ_T0043422.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1236786 1266385 - MGP_C57BL6NJ_P0043422 Coro7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043423.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1243505 1266520 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0043424.1 MGP_C57BL6NJ_G0022883.1 mouse_genomes_project 16 1262316 1266549 - Coro7 protein_coding retained_intron MGP_C57BL6NJ_T0044121.1 MGP_C57BL6NJ_G0023053.1 mouse_genomes_project 16 17721489 17758918 + MGP_C57BL6NJ_P0044121 Klhl24 protein_coding protein_coding MGP_C57BL6NJ_T0044483.1 MGP_C57BL6NJ_G0023141.1 mouse_genomes_project 16 30616830 30626549 + MGP_C57BL6NJ_P0044483 Ncbp2 protein_coding protein_coding MGP_C57BL6NJ_T0044484.1 MGP_C57BL6NJ_G0023141.1 mouse_genomes_project 16 30616918 30625225 + Ncbp2 protein_coding retained_intron MGP_C57BL6NJ_T0044485.1 MGP_C57BL6NJ_G0023141.1 mouse_genomes_project 16 30616923 30629858 + Ncbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0044486.1 MGP_C57BL6NJ_G0023141.1 mouse_genomes_project 16 30616930 30625253 + MGP_C57BL6NJ_P0044486 Ncbp2 protein_coding protein_coding MGP_C57BL6NJ_T0001099.1 MGP_C57BL6NJ_G0001006.1 mouse_genomes_project 16 80085769 80089328 + TEC TEC MGP_C57BL6NJ_T0045535.1 MGP_C57BL6NJ_G0023458.1 mouse_genomes_project 16 95493906 95515401 + MGP_C57BL6NJ_P0045535 Ifnar1 protein_coding protein_coding MGP_C57BL6NJ_T0045536.1 MGP_C57BL6NJ_G0023458.1 mouse_genomes_project 16 95493917 95515397 + MGP_C57BL6NJ_P0045536 Ifnar1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045537.1 MGP_C57BL6NJ_G0023458.1 mouse_genomes_project 16 95493932 95515401 + MGP_C57BL6NJ_P0045537 Ifnar1 protein_coding protein_coding MGP_C57BL6NJ_T0045538.1 MGP_C57BL6NJ_G0023458.1 mouse_genomes_project 16 95493945 95500381 + Ifnar1 protein_coding retained_intron MGP_C57BL6NJ_T0045539.1 MGP_C57BL6NJ_G0023458.1 mouse_genomes_project 16 95494004 95504783 + MGP_C57BL6NJ_P0045539 Ifnar1 protein_coding protein_coding MGP_C57BL6NJ_T0044600.1 MGP_C57BL6NJ_G0023166.1 mouse_genomes_project 16 31827163 31911851 - MGP_C57BL6NJ_P0044600 Iqcg protein_coding protein_coding MGP_C57BL6NJ_T0044601.1 MGP_C57BL6NJ_G0023166.1 mouse_genomes_project 16 31828728 31835393 - Iqcg protein_coding processed_transcript MGP_C57BL6NJ_T0044602.1 MGP_C57BL6NJ_G0023166.1 mouse_genomes_project 16 31886756 31911879 - MGP_C57BL6NJ_P0044602 Iqcg protein_coding protein_coding MGP_C57BL6NJ_T0044603.1 MGP_C57BL6NJ_G0023166.1 mouse_genomes_project 16 31897048 31911846 - Iqcg protein_coding retained_intron MGP_C57BL6NJ_T0003849.1 MGP_C57BL6NJ_G0003468.1 mouse_genomes_project 16 100544445 100560540 + Gm15341 antisense antisense MGP_C57BL6NJ_T0043619.1 MGP_C57BL6NJ_G0022937.1 mouse_genomes_project 16 8215737 8227072 - MGP_C57BL6NJ_P0043619 Rsl1d1 protein_coding protein_coding MGP_C57BL6NJ_T0043620.1 MGP_C57BL6NJ_G0022937.1 mouse_genomes_project 16 8216272 8217763 - Rsl1d1 protein_coding retained_intron MGP_C57BL6NJ_T0043621.1 MGP_C57BL6NJ_G0022937.1 mouse_genomes_project 16 8219211 8227005 - Rsl1d1 protein_coding retained_intron MGP_C57BL6NJ_T0043359.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 471335 481337 - MGP_C57BL6NJ_P0043359 Slx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043360.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 471353 498210 - MGP_C57BL6NJ_P0043360 Slx4 protein_coding protein_coding MGP_C57BL6NJ_T0043361.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 471354 487816 - MGP_C57BL6NJ_P0043361 Slx4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043362.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 471358 477750 - Slx4 protein_coding retained_intron MGP_C57BL6NJ_T0043363.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 471363 474435 - Slx4 protein_coding retained_intron MGP_C57BL6NJ_T0043364.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 486865 497782 - MGP_C57BL6NJ_P0043364 Slx4 protein_coding protein_coding MGP_C57BL6NJ_T0043365.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 497532 500300 - MGP_C57BL6NJ_P0043365 Slx4 protein_coding protein_coding MGP_C57BL6NJ_T0043366.1 MGP_C57BL6NJ_G0022873.1 mouse_genomes_project 16 497730 500282 - MGP_C57BL6NJ_P0043366 Slx4 protein_coding protein_coding MGP_C57BL6NJ_T0045171.1 MGP_C57BL6NJ_G0023314.1 mouse_genomes_project 16 58069357 58304896 + MGP_C57BL6NJ_P0045171 Filip1l protein_coding protein_coding MGP_C57BL6NJ_T0045172.1 MGP_C57BL6NJ_G0023314.1 mouse_genomes_project 16 58069541 58237876 + MGP_C57BL6NJ_P0045172 Filip1l protein_coding protein_coding MGP_C57BL6NJ_T0045173.1 MGP_C57BL6NJ_G0023314.1 mouse_genomes_project 16 58276997 58304574 + MGP_C57BL6NJ_P0045173 Filip1l protein_coding protein_coding MGP_C57BL6NJ_T0045175.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59193977 59256111 + MGP_C57BL6NJ_P0045175 Dcbld2 protein_coding protein_coding MGP_C57BL6NJ_T0045176.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59241624 59251762 + Dcbld2 protein_coding processed_transcript MGP_C57BL6NJ_T0045177.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59242279 59242980 + Dcbld2 protein_coding processed_transcript MGP_C57BL6NJ_T0045178.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59242810 59250207 + Dcbld2 protein_coding retained_intron MGP_C57BL6NJ_T0045179.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59246644 59252211 + Dcbld2 protein_coding processed_transcript MGP_C57BL6NJ_T0045180.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59246688 59253108 + Dcbld2 protein_coding retained_intron MGP_C57BL6NJ_T0045181.1 MGP_C57BL6NJ_G0023316.1 mouse_genomes_project 16 59246690 59253171 + Dcbld2 protein_coding retained_intron MGP_C57BL6NJ_T0010366.1 MGP_C57BL6NJ_G0008451.1 mouse_genomes_project 16 64083561 64083629 + Gm25986 miRNA miRNA MGP_C57BL6NJ_T0045227.1 MGP_C57BL6NJ_G0023333.1 mouse_genomes_project 16 59945599 59949753 - MGP_C57BL6NJ_P0045227 protein_coding protein_coding MGP_C57BL6NJ_T0010365.1 MGP_C57BL6NJ_G0008450.1 mouse_genomes_project 16 61749556 61749669 - Gm27784 miRNA miRNA MGP_C57BL6NJ_T0045739.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99716831 99896614 - MGP_C57BL6NJ_P0045739 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045740.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99716835 99829855 - MGP_C57BL6NJ_P0045740 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045741.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99717872 99960319 - MGP_C57BL6NJ_P0045741 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045742.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99717872 99896614 - MGP_C57BL6NJ_P0045742 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045743.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99718004 99829900 - MGP_C57BL6NJ_P0045743 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045744.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99718307 99889831 - MGP_C57BL6NJ_P0045744 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045745.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99718468 99829797 - MGP_C57BL6NJ_P0045745 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045746.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99718468 99829797 - MGP_C57BL6NJ_P0045746 Erg protein_coding protein_coding MGP_C57BL6NJ_T0045747.1 MGP_C57BL6NJ_G0023493.1 mouse_genomes_project 16 99718468 99896572 - MGP_C57BL6NJ_P0045747 Erg protein_coding protein_coding MGP_C57BL6NJ_T0001100.1 MGP_C57BL6NJ_G0001007.1 mouse_genomes_project 16 80094970 80095493 + TEC TEC MGP_C57BL6NJ_T0043405.1 MGP_C57BL6NJ_G0022882.1 mouse_genomes_project 16 1195818 1196343 - protein_coding retained_intron MGP_C57BL6NJ_T0043406.1 MGP_C57BL6NJ_G0022882.1 mouse_genomes_project 16 1195818 1205370 - MGP_C57BL6NJ_P0043406 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043407.1 MGP_C57BL6NJ_G0022882.1 mouse_genomes_project 16 1195818 1205422 - MGP_C57BL6NJ_P0043407 protein_coding protein_coding MGP_C57BL6NJ_T0043408.1 MGP_C57BL6NJ_G0022882.1 mouse_genomes_project 16 1195956 1198588 - protein_coding retained_intron MGP_C57BL6NJ_T0045482.1 MGP_C57BL6NJ_G0023446.1 mouse_genomes_project 16 94699823 94762337 - MGP_C57BL6NJ_P0045482 Urb1 protein_coding protein_coding MGP_C57BL6NJ_T0045483.1 MGP_C57BL6NJ_G0023446.1 mouse_genomes_project 16 94717799 94723571 - Urb1 protein_coding retained_intron MGP_C57BL6NJ_T0045484.1 MGP_C57BL6NJ_G0023446.1 mouse_genomes_project 16 94733922 94762337 - Urb1 protein_coding retained_intron MGP_C57BL6NJ_T0045485.1 MGP_C57BL6NJ_G0023446.1 mouse_genomes_project 16 94752114 94762326 - Urb1 protein_coding retained_intron MGP_C57BL6NJ_T0045486.1 MGP_C57BL6NJ_G0023446.1 mouse_genomes_project 16 94756903 94762358 - Urb1 protein_coding retained_intron MGP_C57BL6NJ_T0043733.1 MGP_C57BL6NJ_G0022966.1 mouse_genomes_project 16 12856353 12873643 - MGP_C57BL6NJ_P0043733 Mcm4 protein_coding protein_coding MGP_C57BL6NJ_T0043838.1 MGP_C57BL6NJ_G0022988.1 mouse_genomes_project 16 14492558 14556043 - MGP_C57BL6NJ_P0043838 Ube2l3 protein_coding protein_coding MGP_C57BL6NJ_T0043839.1 MGP_C57BL6NJ_G0022988.1 mouse_genomes_project 16 14492560 14554886 - MGP_C57BL6NJ_P0043839 Ube2l3 protein_coding protein_coding MGP_C57BL6NJ_T0043840.1 MGP_C57BL6NJ_G0022988.1 mouse_genomes_project 16 14492863 14503334 - Ube2l3 protein_coding processed_transcript MGP_C57BL6NJ_T0043841.1 MGP_C57BL6NJ_G0022988.1 mouse_genomes_project 16 14493855 14554888 - MGP_C57BL6NJ_P0043841 Ube2l3 protein_coding protein_coding MGP_C57BL6NJ_T0043842.1 MGP_C57BL6NJ_G0022988.1 mouse_genomes_project 16 14500555 14554867 - Ube2l3 protein_coding retained_intron MGP_C57BL6NJ_T0044865.1 MGP_C57BL6NJ_G0023237.1 mouse_genomes_project 16 38309521 38442888 + MGP_C57BL6NJ_P0044865 Igsf11 protein_coding protein_coding MGP_C57BL6NJ_T0044866.1 MGP_C57BL6NJ_G0023237.1 mouse_genomes_project 16 38422780 38440931 + MGP_C57BL6NJ_P0044866 Igsf11 protein_coding protein_coding MGP_C57BL6NJ_T0007000.1 MGP_C57BL6NJ_G0005770.1 mouse_genomes_project 16 16807695 16831258 - Gm43388 lincRNA lincRNA MGP_C57BL6NJ_T0044151.1 MGP_C57BL6NJ_G0023059.1 mouse_genomes_project 16 18170588 18193040 + MGP_C57BL6NJ_P0044151 Eif2b5 protein_coding protein_coding MGP_C57BL6NJ_T0044152.1 MGP_C57BL6NJ_G0023059.1 mouse_genomes_project 16 18178112 18192408 + MGP_C57BL6NJ_P0044152 Eif2b5 protein_coding protein_coding MGP_C57BL6NJ_T0045142.1 MGP_C57BL6NJ_G0023303.1 mouse_genomes_project 16 56879261 56950810 + MGP_C57BL6NJ_P0045142 Impg2 protein_coding protein_coding MGP_C57BL6NJ_T0045143.1 MGP_C57BL6NJ_G0023303.1 mouse_genomes_project 16 56879280 56888535 + Impg2 protein_coding processed_transcript MGP_C57BL6NJ_T0045144.1 MGP_C57BL6NJ_G0023303.1 mouse_genomes_project 16 56879286 56953406 + MGP_C57BL6NJ_P0045144 Impg2 protein_coding protein_coding MGP_C57BL6NJ_T0045145.1 MGP_C57BL6NJ_G0023303.1 mouse_genomes_project 16 56949833 56950690 + Impg2 protein_coding processed_transcript MGP_C57BL6NJ_T0010360.1 MGP_C57BL6NJ_G0008445.1 mouse_genomes_project 16 50930670 50930784 + Mir6363 miRNA miRNA MGP_C57BL6NJ_T0100011.1 MGP_C57BL6NJ_G0038057.1 mouse_genomes_project 16 5595400 5595508 - Gm25805 snRNA snRNA MGP_C57BL6NJ_T0013496.1 MGP_C57BL6NJ_G0011541.1 mouse_genomes_project 16 61409645 61410048 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045417.1 MGP_C57BL6NJ_G0023402.1 mouse_genomes_project 16 92295820 92297391 - MGP_C57BL6NJ_P0045417 Krtap24-1 protein_coding protein_coding MGP_C57BL6NJ_T0043434.1 MGP_C57BL6NJ_G0022887.1 mouse_genomes_project 16 1322354 1358455 + MGP_C57BL6NJ_P0043434 Hmox2 protein_coding protein_coding MGP_C57BL6NJ_T0043435.1 MGP_C57BL6NJ_G0022887.1 mouse_genomes_project 16 1322356 1360349 + MGP_C57BL6NJ_P0043435 Hmox2 protein_coding protein_coding MGP_C57BL6NJ_T0043436.1 MGP_C57BL6NJ_G0022887.1 mouse_genomes_project 16 1338491 1359856 + MGP_C57BL6NJ_P0043436 Hmox2 protein_coding protein_coding MGP_C57BL6NJ_T0043437.1 MGP_C57BL6NJ_G0022887.1 mouse_genomes_project 16 1350510 1359852 + MGP_C57BL6NJ_P0043437 Hmox2 protein_coding protein_coding MGP_C57BL6NJ_T0043438.1 MGP_C57BL6NJ_G0022887.1 mouse_genomes_project 16 1350582 1358697 + MGP_C57BL6NJ_P0043438 Hmox2 protein_coding protein_coding MGP_C57BL6NJ_T0010367.1 MGP_C57BL6NJ_G0008452.1 mouse_genomes_project 16 66368144 66368228 - Gm22801 miRNA miRNA MGP_C57BL6NJ_T0044051.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016344 16089053 + MGP_C57BL6NJ_P0044051 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044052.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016399 16074762 + MGP_C57BL6NJ_P0044052 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044053.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016454 16074946 + Gnb1l protein_coding processed_transcript MGP_C57BL6NJ_T0044054.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016462 16074812 + MGP_C57BL6NJ_P0044054 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044055.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016462 16089001 + MGP_C57BL6NJ_P0044055 Gnb1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044056.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016464 16089053 + MGP_C57BL6NJ_P0044056 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044057.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016464 16089053 + MGP_C57BL6NJ_P0044057 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044058.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016467 16074885 + Gnb1l protein_coding processed_transcript MGP_C57BL6NJ_T0044059.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016473 16066599 + MGP_C57BL6NJ_P0044059 Gnb1l protein_coding protein_coding MGP_C57BL6NJ_T0044061.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16016478 16086912 + MGP_C57BL6NJ_P0044061 Gnb1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044062.1 MGP_C57BL6NJ_G0023027.1 mouse_genomes_project 16 16071116 16074958 + Gnb1l protein_coding processed_transcript MGP_C57BL6NJ_T0045031.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45552224 45667735 - MGP_C57BL6NJ_P0045031 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045032.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45552366 45667677 - MGP_C57BL6NJ_P0045032 Phldb2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045033.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45552375 45667591 - MGP_C57BL6NJ_P0045033 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045034.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45553141 45610938 - MGP_C57BL6NJ_P0045034 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045035.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45560208 45781350 - MGP_C57BL6NJ_P0045035 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045036.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45568527 45578075 - Phldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0045037.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45583504 45595288 - Phldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0045038.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45586126 45597341 - MGP_C57BL6NJ_P0045038 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045039.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45636718 45781245 - MGP_C57BL6NJ_P0045039 Phldb2 protein_coding protein_coding MGP_C57BL6NJ_T0045040.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45636887 45667700 - Phldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0045041.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45728213 45729140 - Phldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0045042.1 MGP_C57BL6NJ_G0023272.1 mouse_genomes_project 16 45728404 45781285 - Phldb2 protein_coding processed_transcript MGP_C57BL6NJ_T0044122.1 MGP_C57BL6NJ_G0023054.1 mouse_genomes_project 16 17784658 17876435 + MGP_C57BL6NJ_P0044122 Yeats2 protein_coding protein_coding MGP_C57BL6NJ_T0045151.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57411302 57440615 - MGP_C57BL6NJ_P0045151 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045152.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57411847 57426665 - MGP_C57BL6NJ_P0045152 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045153.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57411938 57425434 - MGP_C57BL6NJ_P0045153 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045154.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57424466 57440476 - MGP_C57BL6NJ_P0045154 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045155.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57425419 57436141 - MGP_C57BL6NJ_P0045155 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045156.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57425501 57440525 - MGP_C57BL6NJ_P0045156 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045157.1 MGP_C57BL6NJ_G0023305.1 mouse_genomes_project 16 57426581 57440347 - MGP_C57BL6NJ_P0045157 Tfg protein_coding protein_coding MGP_C57BL6NJ_T0045063.1 MGP_C57BL6NJ_G0023283.1 mouse_genomes_project 16 48943978 48945869 + MGP_C57BL6NJ_P0045063 Retnlg protein_coding protein_coding MGP_C57BL6NJ_T0011674.1 MGP_C57BL6NJ_G0009759.1 mouse_genomes_project 16 47714698 47714930 + Gm25339 misc_RNA misc_RNA MGP_C57BL6NJ_T0013453.1 MGP_C57BL6NJ_G0011498.1 mouse_genomes_project 16 16527395 16527803 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100015.1 MGP_C57BL6NJ_G0038061.1 mouse_genomes_project 16 8185384 8187141 - Gm24145 snRNA snRNA MGP_C57BL6NJ_T0013440.1 MGP_C57BL6NJ_G0011485.1 mouse_genomes_project 16 9871711 9873046 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003817.1 MGP_C57BL6NJ_G0003444.1 mouse_genomes_project 16 31420136 31423111 - Tnk2os antisense antisense MGP_C57BL6NJ_T0044280.1 MGP_C57BL6NJ_G0023084.1 mouse_genomes_project 16 20156163 20180528 - MGP_C57BL6NJ_P0044280 Tra2b protein_coding protein_coding MGP_C57BL6NJ_T0044281.1 MGP_C57BL6NJ_G0023084.1 mouse_genomes_project 16 20158908 20166451 - Tra2b protein_coding retained_intron MGP_C57BL6NJ_T0044282.1 MGP_C57BL6NJ_G0023084.1 mouse_genomes_project 16 20168318 20173420 - Tra2b protein_coding processed_transcript MGP_C57BL6NJ_T0044283.1 MGP_C57BL6NJ_G0023084.1 mouse_genomes_project 16 20171861 20180441 - Tra2b protein_coding retained_intron MGP_C57BL6NJ_T0043933.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15046959 15051073 + Ccdc74a protein_coding retained_intron MGP_C57BL6NJ_T0043934.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15046964 15050899 + MGP_C57BL6NJ_P0043934 Ccdc74a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043935.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15046964 15052396 + MGP_C57BL6NJ_P0043935 Ccdc74a protein_coding protein_coding MGP_C57BL6NJ_T0043936.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047040 15050131 + Ccdc74a protein_coding retained_intron MGP_C57BL6NJ_T0043937.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047053 15052395 + MGP_C57BL6NJ_P0043937 Ccdc74a protein_coding protein_coding MGP_C57BL6NJ_T0043938.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047054 15052067 + MGP_C57BL6NJ_P0043938 Ccdc74a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043939.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047102 15052396 + MGP_C57BL6NJ_P0043939 Ccdc74a protein_coding protein_coding MGP_C57BL6NJ_T0043940.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047107 15052105 + MGP_C57BL6NJ_P0043940 Ccdc74a protein_coding protein_coding MGP_C57BL6NJ_T0043941.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047162 15049519 + Ccdc74a protein_coding retained_intron MGP_C57BL6NJ_T0043942.1 MGP_C57BL6NJ_G0023003.1 mouse_genomes_project 16 15047189 15052396 + MGP_C57BL6NJ_P0043942 Ccdc74a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0011672.1 MGP_C57BL6NJ_G0009757.1 mouse_genomes_project 16 40850240 40850403 - Gm27587 misc_RNA misc_RNA MGP_C57BL6NJ_T0045422.1 MGP_C57BL6NJ_G0023407.1 mouse_genomes_project 16 92416257 92417005 + MGP_C57BL6NJ_P0045422 Krtap13-1 protein_coding protein_coding MGP_C57BL6NJ_T0045444.1 MGP_C57BL6NJ_G0023427.1 mouse_genomes_project 16 92790742 92791333 - MGP_C57BL6NJ_P0045444 1110025L11Rik protein_coding protein_coding MGP_C57BL6NJ_T0013468.1 MGP_C57BL6NJ_G0011513.1 mouse_genomes_project 16 30579024 30579904 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043734.1 MGP_C57BL6NJ_G0022967.1 mouse_genomes_project 16 12874108 12922967 + Prkdc protein_coding retained_intron MGP_C57BL6NJ_T0043735.1 MGP_C57BL6NJ_G0022967.1 mouse_genomes_project 16 12874131 13086780 + MGP_C57BL6NJ_P0043735 Prkdc protein_coding protein_coding MGP_C57BL6NJ_T0045528.1 MGP_C57BL6NJ_G0023456.1 mouse_genomes_project 16 95388536 95420474 + MGP_C57BL6NJ_P0045528 Gm21970 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045529.1 MGP_C57BL6NJ_G0023456.1 mouse_genomes_project 16 95388536 95420474 + MGP_C57BL6NJ_P0045529 Gm21970 protein_coding protein_coding MGP_C57BL6NJ_T0043544.1 MGP_C57BL6NJ_G0022918.1 mouse_genomes_project 16 7122143 7174000 + MGP_C57BL6NJ_P0043544 Atf7ip2 protein_coding protein_coding MGP_C57BL6NJ_T0043545.1 MGP_C57BL6NJ_G0022918.1 mouse_genomes_project 16 7122337 7165174 + MGP_C57BL6NJ_P0043545 Atf7ip2 protein_coding protein_coding MGP_C57BL6NJ_T0043546.1 MGP_C57BL6NJ_G0022918.1 mouse_genomes_project 16 7122353 7171763 + MGP_C57BL6NJ_P0043546 Atf7ip2 protein_coding protein_coding MGP_C57BL6NJ_T0043547.1 MGP_C57BL6NJ_G0022918.1 mouse_genomes_project 16 7122357 7155028 + MGP_C57BL6NJ_P0043547 Atf7ip2 protein_coding protein_coding MGP_C57BL6NJ_T0043548.1 MGP_C57BL6NJ_G0022918.1 mouse_genomes_project 16 7122378 7144394 + Atf7ip2 protein_coding retained_intron MGP_C57BL6NJ_T0045060.1 MGP_C57BL6NJ_G0023280.1 mouse_genomes_project 16 48785037 48830293 - MGP_C57BL6NJ_P0045060 Trat1 protein_coding protein_coding MGP_C57BL6NJ_T0045634.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96689896 96922980 - MGP_C57BL6NJ_P0045634 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0045635.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96692086 96786233 - MGP_C57BL6NJ_P0045635 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0045636.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96693828 96785030 - MGP_C57BL6NJ_P0045636 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0045637.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96774958 96784400 - MGP_C57BL6NJ_P0045637 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0045638.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96774991 96786230 - Runx1 protein_coding retained_intron MGP_C57BL6NJ_T0045639.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96784496 96922609 - MGP_C57BL6NJ_P0045639 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0045640.1 MGP_C57BL6NJ_G0023476.1 mouse_genomes_project 16 96912258 96922905 - MGP_C57BL6NJ_P0045640 Runx1 protein_coding protein_coding MGP_C57BL6NJ_T0007017.1 MGP_C57BL6NJ_G0005785.1 mouse_genomes_project 16 37822595 37824107 + D930030I03Rik lincRNA lincRNA MGP_C57BL6NJ_T0044802.1 MGP_C57BL6NJ_G0023217.1 mouse_genomes_project 16 37111801 37173461 + MGP_C57BL6NJ_P0044802 Fstl1 protein_coding protein_coding MGP_C57BL6NJ_T0044803.1 MGP_C57BL6NJ_G0023217.1 mouse_genomes_project 16 37112003 37128830 + Fstl1 protein_coding processed_transcript MGP_C57BL6NJ_T0044804.1 MGP_C57BL6NJ_G0023217.1 mouse_genomes_project 16 37112080 37155886 + Fstl1 protein_coding retained_intron MGP_C57BL6NJ_T0044805.1 MGP_C57BL6NJ_G0023217.1 mouse_genomes_project 16 37152649 37171365 + Fstl1 protein_coding processed_transcript MGP_C57BL6NJ_T0044806.1 MGP_C57BL6NJ_G0023217.1 mouse_genomes_project 16 37159659 37172563 + Fstl1 protein_coding processed_transcript MGP_C57BL6NJ_T0045287.1 MGP_C57BL6NJ_G0023363.1 mouse_genomes_project 16 67004169 67029700 - MGP_C57BL6NJ_P0045287 Chmp2b protein_coding protein_coding MGP_C57BL6NJ_T0098831.1 MGP_C57BL6NJ_G0036895.1 mouse_genomes_project 16 35405531 35405625 - pseudogene pseudogene MGP_C57BL6NJ_T0013465.1 MGP_C57BL6NJ_G0011510.1 mouse_genomes_project 16 23976997 23977918 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100010.1 MGP_C57BL6NJ_G0038056.1 mouse_genomes_project 16 5115136 5115240 + Gm26159 snRNA snRNA MGP_C57BL6NJ_T0044383.1 MGP_C57BL6NJ_G0023117.1 mouse_genomes_project 16 26516726 26822337 - MGP_C57BL6NJ_P0044383 Fgf12 protein_coding protein_coding MGP_C57BL6NJ_T0045452.1 MGP_C57BL6NJ_G0023433.1 mouse_genomes_project 16 92912837 92913302 + MGP_C57BL6NJ_P0045452 1110057P08Rik protein_coding protein_coding MGP_C57BL6NJ_T0043513.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5452248 5475231 + MGP_C57BL6NJ_P0043513 Pmm2 protein_coding protein_coding MGP_C57BL6NJ_T0043514.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5452297 5464834 + Pmm2 protein_coding retained_intron MGP_C57BL6NJ_T0043515.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5452312 5459591 + Pmm2 protein_coding retained_intron MGP_C57BL6NJ_T0043516.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5452616 5467146 + Pmm2 protein_coding processed_transcript MGP_C57BL6NJ_T0043517.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5460545 5464429 + Pmm2 protein_coding retained_intron MGP_C57BL6NJ_T0043518.1 MGP_C57BL6NJ_G0022911.1 mouse_genomes_project 16 5464310 5474442 + Pmm2 protein_coding retained_intron MGP_C57BL6NJ_T0013438.1 MGP_C57BL6NJ_G0011483.1 mouse_genomes_project 16 8210189 8211201 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0098836.1 MGP_C57BL6NJ_G0036900.1 mouse_genomes_project 16 92456619 92457249 + pseudogene pseudogene MGP_C57BL6NJ_T0044898.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43569711 43598424 - MGP_C57BL6NJ_P0044898 Qtrtd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044899.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43569714 43598443 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044900.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43569714 43598480 - MGP_C57BL6NJ_P0044900 Qtrtd1 protein_coding protein_coding MGP_C57BL6NJ_T0044901.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43571091 43574928 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044902.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43571337 43636874 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044903.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43574879 43576768 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044904.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43576318 43598451 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044905.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43580467 43585759 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0044906.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43585577 43598450 - MGP_C57BL6NJ_P0044906 Qtrtd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044907.1 MGP_C57BL6NJ_G0023243.1 mouse_genomes_project 16 43589093 43598451 - Qtrtd1 protein_coding retained_intron MGP_C57BL6NJ_T0099032.1 MGP_C57BL6NJ_G0037096.1 mouse_genomes_project 16 40763764 40763856 + Gm26381 rRNA rRNA MGP_C57BL6NJ_T0045367.1 MGP_C57BL6NJ_G0023387.1 mouse_genomes_project 16 88191573 88219187 + MGP_C57BL6NJ_P0045367 Gabpa protein_coding protein_coding MGP_C57BL6NJ_T0045368.1 MGP_C57BL6NJ_G0023387.1 mouse_genomes_project 16 88191772 88221651 + MGP_C57BL6NJ_P0045368 Gabpa protein_coding protein_coding MGP_C57BL6NJ_T0045369.1 MGP_C57BL6NJ_G0023387.1 mouse_genomes_project 16 88209167 88218301 + Gabpa protein_coding processed_transcript MGP_C57BL6NJ_T0045370.1 MGP_C57BL6NJ_G0023387.1 mouse_genomes_project 16 88213911 88215450 + Gabpa protein_coding retained_intron MGP_C57BL6NJ_T0045371.1 MGP_C57BL6NJ_G0023387.1 mouse_genomes_project 16 88217916 88220337 + Gabpa protein_coding processed_transcript MGP_C57BL6NJ_T0017991.1 MGP_C57BL6NJ_G0015722.1 mouse_genomes_project 16 95711246 95739345 + Gm10785 processed_transcript processed_transcript MGP_C57BL6NJ_T0045625.1 MGP_C57BL6NJ_G0023471.1 mouse_genomes_project 16 96354710 96366466 + MGP_C57BL6NJ_P0045625 Smim11 protein_coding protein_coding MGP_C57BL6NJ_T0045626.1 MGP_C57BL6NJ_G0023471.1 mouse_genomes_project 16 96354720 96364849 + MGP_C57BL6NJ_P0045626 Smim11 protein_coding protein_coding MGP_C57BL6NJ_T0101311.1 MGP_C57BL6NJ_G0039357.1 mouse_genomes_project 16 22462 22582 - snoRNA snoRNA MGP_C57BL6NJ_T0100064.1 MGP_C57BL6NJ_G0038110.1 mouse_genomes_project 16 98713039 98713199 + Gm23692 snRNA snRNA MGP_C57BL6NJ_T0043379.1 MGP_C57BL6NJ_G0022876.1 mouse_genomes_project 16 540420 589100 - MGP_C57BL6NJ_P0043379 Trap1 protein_coding protein_coding MGP_C57BL6NJ_T0043380.1 MGP_C57BL6NJ_G0022876.1 mouse_genomes_project 16 540589 545148 - Trap1 protein_coding processed_transcript MGP_C57BL6NJ_T0043381.1 MGP_C57BL6NJ_G0022876.1 mouse_genomes_project 16 559105 589048 - MGP_C57BL6NJ_P0043381 Trap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043382.1 MGP_C57BL6NJ_G0022876.1 mouse_genomes_project 16 571028 589100 - Trap1 protein_coding retained_intron MGP_C57BL6NJ_T0043710.1 MGP_C57BL6NJ_G0022959.1 mouse_genomes_project 16 11500011 11517713 - Fopnl protein_coding processed_transcript MGP_C57BL6NJ_T0043711.1 MGP_C57BL6NJ_G0022959.1 mouse_genomes_project 16 11500699 11517702 - MGP_C57BL6NJ_P0043711 Fopnl protein_coding protein_coding MGP_C57BL6NJ_T0044968.1 MGP_C57BL6NJ_G0023256.1 mouse_genomes_project 16 44522047 44554727 + MGP_C57BL6NJ_P0044968 Cd200r1 protein_coding protein_coding MGP_C57BL6NJ_T0013512.1 MGP_C57BL6NJ_G0011557.1 mouse_genomes_project 16 94875866 94876418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045575.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95706733 95955043 - MGP_C57BL6NJ_P0045575 Atp5o protein_coding protein_coding MGP_C57BL6NJ_T0045613.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95953274 95959748 - MGP_C57BL6NJ_P0045613 Atp5o protein_coding protein_coding MGP_C57BL6NJ_T0045614.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95953279 95954745 - Atp5o protein_coding retained_intron MGP_C57BL6NJ_T0045615.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95953281 95959607 - MGP_C57BL6NJ_P0045615 Atp5o protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045616.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95953373 95959335 - Atp5o protein_coding processed_transcript MGP_C57BL6NJ_T0045617.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95954919 95959479 - Atp5o protein_coding processed_transcript MGP_C57BL6NJ_T0045618.1 MGP_C57BL6NJ_G0023465.1 mouse_genomes_project 16 95956221 95959612 - Atp5o protein_coding retained_intron MGP_C57BL6NJ_T0101347.1 MGP_C57BL6NJ_G0039393.1 mouse_genomes_project 16 70246782 70246889 - Gm24681 snoRNA snoRNA MGP_C57BL6NJ_T0044795.1 MGP_C57BL6NJ_G0023215.1 mouse_genomes_project 16 36891942 36951422 + MGP_C57BL6NJ_P0044795 Hgd protein_coding protein_coding MGP_C57BL6NJ_T0044796.1 MGP_C57BL6NJ_G0023215.1 mouse_genomes_project 16 36892039 36951422 + Hgd protein_coding processed_transcript MGP_C57BL6NJ_T0044797.1 MGP_C57BL6NJ_G0023215.1 mouse_genomes_project 16 36892043 36931550 + Hgd protein_coding retained_intron MGP_C57BL6NJ_T0044798.1 MGP_C57BL6NJ_G0023215.1 mouse_genomes_project 16 36892071 36935679 + Hgd protein_coding processed_transcript MGP_C57BL6NJ_T0044799.1 MGP_C57BL6NJ_G0023215.1 mouse_genomes_project 16 36941264 36951422 + Hgd protein_coding processed_transcript MGP_C57BL6NJ_T0045627.1 MGP_C57BL6NJ_G0023472.1 mouse_genomes_project 16 96372187 96374866 - MGP_C57BL6NJ_P0045627 4930563D23Rik protein_coding protein_coding MGP_C57BL6NJ_T0043428.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1304943 1315103 - MGP_C57BL6NJ_P0043428 Nmral1 protein_coding protein_coding MGP_C57BL6NJ_T0043429.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1306201 1315350 - MGP_C57BL6NJ_P0043429 Nmral1 protein_coding protein_coding MGP_C57BL6NJ_T0043430.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1306201 1315150 - MGP_C57BL6NJ_P0043430 Nmral1 protein_coding protein_coding MGP_C57BL6NJ_T0043431.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1307179 1315106 - MGP_C57BL6NJ_P0043431 Nmral1 protein_coding protein_coding MGP_C57BL6NJ_T0043432.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1309393 1315082 - Nmral1 protein_coding retained_intron MGP_C57BL6NJ_T0043433.1 MGP_C57BL6NJ_G0022886.1 mouse_genomes_project 16 1310709 1315098 - Nmral1 protein_coding retained_intron MGP_C57BL6NJ_T0006989.1 MGP_C57BL6NJ_G0005760.1 mouse_genomes_project 16 1541795 1546333 - Gm16861 lincRNA lincRNA MGP_C57BL6NJ_T0100042.1 MGP_C57BL6NJ_G0038088.1 mouse_genomes_project 16 42790911 42791018 + Gm25873 snRNA snRNA MGP_C57BL6NJ_T0045808.1 MGP_C57BL6NJ_G0023506.1 mouse_genomes_project 16 101887259 101969500 + MGP_C57BL6NJ_P0045808 Bace2 protein_coding protein_coding MGP_C57BL6NJ_T0045456.1 MGP_C57BL6NJ_G0023437.1 mouse_genomes_project 16 93289782 93290361 - MGP_C57BL6NJ_P0045456 Krtap8-1 protein_coding protein_coding MGP_C57BL6NJ_T0101346.1 MGP_C57BL6NJ_G0039392.1 mouse_genomes_project 16 66648909 66649039 - Gm22429 snoRNA snoRNA MGP_C57BL6NJ_T0101352.1 MGP_C57BL6NJ_G0039398.1 mouse_genomes_project 16 80924273 80924404 + Gm25916 snoRNA snoRNA MGP_C57BL6NJ_T0045436.1 MGP_C57BL6NJ_G0023419.1 mouse_genomes_project 16 92629446 92629614 - MGP_C57BL6NJ_P0045436 Krtap19-9a protein_coding protein_coding MGP_C57BL6NJ_T0044243.1 MGP_C57BL6NJ_G0023073.1 mouse_genomes_project 16 18440169 18449427 + MGP_C57BL6NJ_P0044243 Chrd protein_coding protein_coding MGP_C57BL6NJ_T0044244.1 MGP_C57BL6NJ_G0023073.1 mouse_genomes_project 16 18440169 18445195 + MGP_C57BL6NJ_P0044244 Chrd protein_coding protein_coding MGP_C57BL6NJ_T0044245.1 MGP_C57BL6NJ_G0023073.1 mouse_genomes_project 16 18440169 18449427 + MGP_C57BL6NJ_P0044245 Chrd protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044246.1 MGP_C57BL6NJ_G0023073.1 mouse_genomes_project 16 18443248 18449425 + Chrd protein_coding retained_intron MGP_C57BL6NJ_T0001104.1 MGP_C57BL6NJ_G0001011.1 mouse_genomes_project 16 80268960 80272013 + TEC TEC MGP_C57BL6NJ_T0010380.1 MGP_C57BL6NJ_G0008465.1 mouse_genomes_project 16 97189557 97189625 + Gm28003 miRNA miRNA MGP_C57BL6NJ_T0001083.1 MGP_C57BL6NJ_G0000991.1 mouse_genomes_project 16 15354418 15355584 + TEC TEC MGP_C57BL6NJ_T0013493.1 MGP_C57BL6NJ_G0011538.1 mouse_genomes_project 16 50858469 50860672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099025.1 MGP_C57BL6NJ_G0037089.1 mouse_genomes_project 16 1946324 1946446 - n-R5s30 rRNA rRNA MGP_C57BL6NJ_T0045650.1 MGP_C57BL6NJ_G0023479.1 mouse_genomes_project 16 97897359 97905165 + MGP_C57BL6NJ_P0045650 Cbr3 protein_coding protein_coding MGP_C57BL6NJ_T0045087.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50345855 50601937 - MGP_C57BL6NJ_P0045087 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045088.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50349791 50601887 - MGP_C57BL6NJ_P0045088 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045089.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50350627 50601936 - MGP_C57BL6NJ_P0045089 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045090.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50351170 50492148 - MGP_C57BL6NJ_P0045090 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045091.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50364489 50601921 - MGP_C57BL6NJ_P0045091 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045092.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50372568 50601936 - MGP_C57BL6NJ_P0045092 Bbx protein_coding protein_coding MGP_C57BL6NJ_T0045093.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50378858 50597737 - Bbx protein_coding processed_transcript MGP_C57BL6NJ_T0045094.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50593785 50601856 - Bbx protein_coding retained_intron MGP_C57BL6NJ_T0045095.1 MGP_C57BL6NJ_G0023290.1 mouse_genomes_project 16 50595205 50601894 - Bbx protein_coding processed_transcript MGP_C57BL6NJ_T0102890.1 MGP_C57BL6NJ_G0040684.1 mouse_genomes_project 16 59825836 59827718 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0044833.1 MGP_C57BL6NJ_G0023229.1 mouse_genomes_project 16 37830923 37862217 + MGP_C57BL6NJ_P0044833 Cd80 protein_coding protein_coding MGP_C57BL6NJ_T0101337.1 MGP_C57BL6NJ_G0039383.1 mouse_genomes_project 16 52412601 52412734 - Gm23513 snoRNA snoRNA MGP_C57BL6NJ_T0044351.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 23925338 24073274 + MGP_C57BL6NJ_P0044351 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044352.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 23925340 24145890 + MGP_C57BL6NJ_P0044352 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044353.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 23925340 24130947 + MGP_C57BL6NJ_P0044353 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044354.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 23925340 24145905 + MGP_C57BL6NJ_P0044354 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044355.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 24053883 24130947 + MGP_C57BL6NJ_P0044355 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044356.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 24053883 24121662 + MGP_C57BL6NJ_P0044356 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044357.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 24053883 24145905 + MGP_C57BL6NJ_P0044357 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0044358.1 MGP_C57BL6NJ_G0023107.1 mouse_genomes_project 16 24053883 24145905 + MGP_C57BL6NJ_P0044358 Trp63 protein_coding protein_coding MGP_C57BL6NJ_T0007046.1 MGP_C57BL6NJ_G0005804.1 mouse_genomes_project 16 95306394 95316361 - Gm15966 lincRNA lincRNA MGP_C57BL6NJ_T0007047.1 MGP_C57BL6NJ_G0005804.1 mouse_genomes_project 16 95306619 95313106 - Gm15966 lincRNA lincRNA MGP_C57BL6NJ_T0044708.1 MGP_C57BL6NJ_G0023195.1 mouse_genomes_project 16 35228740 35240865 - MGP_C57BL6NJ_P0044708 Csta1 protein_coding protein_coding MGP_C57BL6NJ_T0044709.1 MGP_C57BL6NJ_G0023195.1 mouse_genomes_project 16 35230963 35240829 - MGP_C57BL6NJ_P0044709 Csta1 protein_coding protein_coding MGP_C57BL6NJ_T0043898.1 MGP_C57BL6NJ_G0022999.1 mouse_genomes_project 16 14935364 14956205 - MGP_C57BL6NJ_P0043898 Lrrc74b protein_coding protein_coding MGP_C57BL6NJ_T0043899.1 MGP_C57BL6NJ_G0022999.1 mouse_genomes_project 16 14935364 14956205 - MGP_C57BL6NJ_P0043899 Lrrc74b protein_coding protein_coding MGP_C57BL6NJ_T0043900.1 MGP_C57BL6NJ_G0022999.1 mouse_genomes_project 16 14936329 14949390 - Lrrc74b protein_coding processed_transcript MGP_C57BL6NJ_T0043901.1 MGP_C57BL6NJ_G0022999.1 mouse_genomes_project 16 14943768 14956202 - MGP_C57BL6NJ_P0043901 Lrrc74b protein_coding protein_coding MGP_C57BL6NJ_T0045080.1 MGP_C57BL6NJ_G0023288.1 mouse_genomes_project 16 49829201 49899597 + MGP_C57BL6NJ_P0045080 Ift57 protein_coding protein_coding MGP_C57BL6NJ_T0045081.1 MGP_C57BL6NJ_G0023288.1 mouse_genomes_project 16 49829272 49897099 + MGP_C57BL6NJ_P0045081 Ift57 protein_coding protein_coding MGP_C57BL6NJ_T0045082.1 MGP_C57BL6NJ_G0023288.1 mouse_genomes_project 16 49829323 49843813 + Ift57 protein_coding processed_transcript MGP_C57BL6NJ_T0045083.1 MGP_C57BL6NJ_G0023288.1 mouse_genomes_project 16 49842867 49898587 + MGP_C57BL6NJ_P0045083 Ift57 protein_coding protein_coding MGP_C57BL6NJ_T0003829.1 MGP_C57BL6NJ_G0003452.1 mouse_genomes_project 16 37657954 37666205 + antisense antisense MGP_C57BL6NJ_T0044492.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760096 30779074 - MGP_C57BL6NJ_P0044492 Pigx protein_coding protein_coding MGP_C57BL6NJ_T0044493.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760098 30763832 - Pigx protein_coding processed_transcript MGP_C57BL6NJ_T0044494.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760102 30779051 - Pigx protein_coding processed_transcript MGP_C57BL6NJ_T0044495.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760102 30779085 - MGP_C57BL6NJ_P0044495 Pigx protein_coding protein_coding MGP_C57BL6NJ_T0044496.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760116 30779075 - MGP_C57BL6NJ_P0044496 Pigx protein_coding protein_coding MGP_C57BL6NJ_T0044497.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760137 30779054 - MGP_C57BL6NJ_P0044497 Pigx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044498.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30760966 30779040 - MGP_C57BL6NJ_P0044498 Pigx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044499.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30762972 30779043 - MGP_C57BL6NJ_P0044499 Pigx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044500.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30763178 30779047 - MGP_C57BL6NJ_P0044500 Pigx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044501.1 MGP_C57BL6NJ_G0023144.1 mouse_genomes_project 16 30776735 30779058 - MGP_C57BL6NJ_P0044501 Pigx protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043873.1 MGP_C57BL6NJ_G0022995.1 mouse_genomes_project 16 14829916 14871982 + MGP_C57BL6NJ_P0043873 Crkl protein_coding protein_coding MGP_C57BL6NJ_T0010350.1 MGP_C57BL6NJ_G0008435.1 mouse_genomes_project 16 31923807 31923880 + Gm22231 miRNA miRNA MGP_C57BL6NJ_T0045229.1 MGP_C57BL6NJ_G0023335.1 mouse_genomes_project 16 59959968 59960975 - MGP_C57BL6NJ_P0045229 protein_coding protein_coding MGP_C57BL6NJ_T0045196.1 MGP_C57BL6NJ_G0023318.1 mouse_genomes_project 16 59409291 59412584 - MGP_C57BL6NJ_P0045196 Gm813 protein_coding protein_coding MGP_C57BL6NJ_T0045337.1 MGP_C57BL6NJ_G0023378.1 mouse_genomes_project 16 80993694 81034165 + MGP_C57BL6NJ_P0045337 Cxadr protein_coding protein_coding MGP_C57BL6NJ_T0045338.1 MGP_C57BL6NJ_G0023378.1 mouse_genomes_project 16 80993954 81050346 + MGP_C57BL6NJ_P0045338 Cxadr protein_coding protein_coding MGP_C57BL6NJ_T0017989.1 MGP_C57BL6NJ_G0015720.1 mouse_genomes_project 16 95469801 95476963 + A930006K02Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0044300.1 MGP_C57BL6NJ_G0023091.1 mouse_genomes_project 16 20900548 20910976 + MGP_C57BL6NJ_P0044300 Fetub protein_coding protein_coding MGP_C57BL6NJ_T0001096.1 MGP_C57BL6NJ_G0001003.1 mouse_genomes_project 16 80020646 80021920 + TEC TEC MGP_C57BL6NJ_T0045453.1 MGP_C57BL6NJ_G0023434.1 mouse_genomes_project 16 92945576 92946104 + MGP_C57BL6NJ_P0045453 Krtap20-2 protein_coding protein_coding MGP_C57BL6NJ_T0001107.1 MGP_C57BL6NJ_G0001014.1 mouse_genomes_project 16 82460238 82460838 + TEC TEC MGP_C57BL6NJ_T0013472.1 MGP_C57BL6NJ_G0011517.1 mouse_genomes_project 16 31496988 31497928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101312.1 MGP_C57BL6NJ_G0039358.1 mouse_genomes_project 16 5191109 5191253 + Gm24579 snoRNA snoRNA MGP_C57BL6NJ_T0017984.1 MGP_C57BL6NJ_G0015717.1 mouse_genomes_project 16 91079397 91087416 + B130034C11Rik processed_transcript retained_intron MGP_C57BL6NJ_T0017985.1 MGP_C57BL6NJ_G0015717.1 mouse_genomes_project 16 91079471 91087621 + B130034C11Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0045641.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97766121 97791401 - Setd4 protein_coding retained_intron MGP_C57BL6NJ_T0045642.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97766121 97791413 - MGP_C57BL6NJ_P0045642 Setd4 protein_coding protein_coding MGP_C57BL6NJ_T0045643.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97766122 97772582 - Setd4 protein_coding processed_transcript MGP_C57BL6NJ_T0045644.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97766124 97775220 - Setd4 protein_coding retained_intron MGP_C57BL6NJ_T0045645.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97766124 97791425 - MGP_C57BL6NJ_P0045645 Setd4 protein_coding protein_coding MGP_C57BL6NJ_T0045646.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97777094 97783761 - Setd4 protein_coding processed_transcript MGP_C57BL6NJ_T0045647.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97777226 97791673 - Setd4 protein_coding processed_transcript MGP_C57BL6NJ_T0045648.1 MGP_C57BL6NJ_G0023477.1 mouse_genomes_project 16 97787982 97791425 - Setd4 protein_coding processed_transcript MGP_C57BL6NJ_T0007045.1 MGP_C57BL6NJ_G0005803.1 mouse_genomes_project 16 94665072 94669408 + lincRNA lincRNA MGP_C57BL6NJ_T0043328.1 MGP_C57BL6NJ_G0022866.1 mouse_genomes_project 16 326208 339078 + MGP_C57BL6NJ_P0043328 Zfp174 protein_coding protein_coding MGP_C57BL6NJ_T0100013.1 MGP_C57BL6NJ_G0038059.1 mouse_genomes_project 16 7167242 7167345 + Gm24392 snRNA snRNA MGP_C57BL6NJ_T0045275.1 MGP_C57BL6NJ_G0023356.1 mouse_genomes_project 16 64865402 65212209 - MGP_C57BL6NJ_P0045275 Epha3 protein_coding protein_coding MGP_C57BL6NJ_T0043965.1 MGP_C57BL6NJ_G0023011.1 mouse_genomes_project 16 15327762 15329149 + MGP_C57BL6NJ_P0043965 Tssk2 protein_coding protein_coding MGP_C57BL6NJ_T0010374.1 MGP_C57BL6NJ_G0008459.1 mouse_genomes_project 16 80268893 80268964 + Mir125b-2 miRNA miRNA MGP_C57BL6NJ_T0013441.1 MGP_C57BL6NJ_G0011486.1 mouse_genomes_project 16 11182938 11183893 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0012072.1 MGP_C57BL6NJ_G0010152.1 mouse_genomes_project 16 102065498 102095907 + MGP_C57BL6NJ_P0012072 Mx2 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012073.1 MGP_C57BL6NJ_G0010152.1 mouse_genomes_project 16 102066273 102096467 + MGP_C57BL6NJ_P0012073 Mx2 polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012074.1 MGP_C57BL6NJ_G0010152.1 mouse_genomes_project 16 102082369 102083953 + Mx2 polymorphic_pseudogene processed_transcript MGP_C57BL6NJ_T0012075.1 MGP_C57BL6NJ_G0010152.1 mouse_genomes_project 16 102093979 102096086 + Mx2 polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0013504.1 MGP_C57BL6NJ_G0011549.1 mouse_genomes_project 16 77381645 77382653 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101356.1 MGP_C57BL6NJ_G0039402.1 mouse_genomes_project 16 88557663 88557816 + Gm27295 snoRNA snoRNA MGP_C57BL6NJ_T0045439.1 MGP_C57BL6NJ_G0023422.1 mouse_genomes_project 16 92725420 92725800 - MGP_C57BL6NJ_P0045439 Krtap22-2 protein_coding protein_coding MGP_C57BL6NJ_T0045675.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98632403 98654253 - MGP_C57BL6NJ_P0045675 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045676.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648424 98654658 - MGP_C57BL6NJ_P0045676 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045677.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648424 98654979 - MGP_C57BL6NJ_P0045677 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045678.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648424 98654676 - MGP_C57BL6NJ_P0045678 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045679.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648424 98654979 - MGP_C57BL6NJ_P0045679 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045680.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648429 98649481 - Pigp protein_coding processed_transcript MGP_C57BL6NJ_T0045681.1 MGP_C57BL6NJ_G0023487.1 mouse_genomes_project 16 98648669 98654473 - MGP_C57BL6NJ_P0045681 Pigp protein_coding protein_coding MGP_C57BL6NJ_T0045407.1 MGP_C57BL6NJ_G0023398.1 mouse_genomes_project 16 91300377 91343449 + Bach1 protein_coding processed_transcript MGP_C57BL6NJ_T0045408.1 MGP_C57BL6NJ_G0023398.1 mouse_genomes_project 16 91300416 91333803 + Bach1 protein_coding retained_intron MGP_C57BL6NJ_T0045409.1 MGP_C57BL6NJ_G0023398.1 mouse_genomes_project 16 91325778 91340742 + MGP_C57BL6NJ_P0045409 Bach1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045096.1 MGP_C57BL6NJ_G0023291.1 mouse_genomes_project 16 50777804 50779100 - MGP_C57BL6NJ_P0045096 Ccdc54 protein_coding protein_coding MGP_C57BL6NJ_T0013429.1 MGP_C57BL6NJ_G0011474.1 mouse_genomes_project 16 407841 408154 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007043.1 MGP_C57BL6NJ_G0005802.1 mouse_genomes_project 16 94478904 94479625 + 1110008E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0007044.1 MGP_C57BL6NJ_G0005802.1 mouse_genomes_project 16 94478904 94479627 + 1110008E08Rik lincRNA lincRNA MGP_C57BL6NJ_T0045726.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607243 99649447 + MGP_C57BL6NJ_P0045726 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045727.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607243 99648859 + MGP_C57BL6NJ_P0045727 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045728.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607243 99649447 + MGP_C57BL6NJ_P0045728 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045729.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607243 99649447 + MGP_C57BL6NJ_P0045729 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045730.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607243 99647743 + MGP_C57BL6NJ_P0045730 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045731.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607336 99649496 + MGP_C57BL6NJ_P0045731 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045732.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607344 99644954 + MGP_C57BL6NJ_P0045732 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045733.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607344 99645289 + MGP_C57BL6NJ_P0045733 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045734.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607368 99644931 + MGP_C57BL6NJ_P0045734 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045735.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607459 99649447 + MGP_C57BL6NJ_P0045735 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045736.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607613 99641080 + Kcnj15 protein_coding processed_transcript MGP_C57BL6NJ_T0045737.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99607674 99649447 + MGP_C57BL6NJ_P0045737 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0045738.1 MGP_C57BL6NJ_G0023492.1 mouse_genomes_project 16 99628448 99641143 + MGP_C57BL6NJ_P0045738 Kcnj15 protein_coding protein_coding MGP_C57BL6NJ_T0044084.1 MGP_C57BL6NJ_G0023036.1 mouse_genomes_project 16 16418399 16539385 + MGP_C57BL6NJ_P0044084 Gm28539 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007054.1 MGP_C57BL6NJ_G0005809.1 mouse_genomes_project 16 100319133 100320464 + Gm15340 lincRNA lincRNA MGP_C57BL6NJ_T0000019.1 MGP_C57BL6NJ_G0000012.1 mouse_genomes_project 16 16653028 16653480 - MGP_C57BL6NJ_P0000019 Iglc3 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0100052.1 MGP_C57BL6NJ_G0038098.1 mouse_genomes_project 16 67744028 67744135 + Gm22448 snRNA snRNA MGP_C57BL6NJ_T0043602.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8154195 8196341 - MGP_C57BL6NJ_P0043602 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0043603.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8154729 8158493 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043604.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8156646 8159509 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043605.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8158316 8166843 - MGP_C57BL6NJ_P0043605 Zc3h7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043606.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8158410 8196289 - MGP_C57BL6NJ_P0043606 Zc3h7a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043607.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8163542 8196048 - MGP_C57BL6NJ_P0043607 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0043608.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8163728 8165693 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043609.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8165694 8169743 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043610.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8166845 8194925 - MGP_C57BL6NJ_P0043610 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0043611.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8168616 8169547 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043612.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8169608 8171073 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043613.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8170001 8174401 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043614.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8171339 8177021 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043615.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8172507 8177043 - Zc3h7a protein_coding retained_intron MGP_C57BL6NJ_T0043616.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8174852 8194892 - MGP_C57BL6NJ_P0043616 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0043617.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8179327 8195513 - MGP_C57BL6NJ_P0043617 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0043618.1 MGP_C57BL6NJ_G0022936.1 mouse_genomes_project 16 8179337 8196012 - MGP_C57BL6NJ_P0043618 Zc3h7a protein_coding protein_coding MGP_C57BL6NJ_T0045373.1 MGP_C57BL6NJ_G0023389.1 mouse_genomes_project 16 88821832 88962833 - MGP_C57BL6NJ_P0045373 protein_coding protein_coding MGP_C57BL6NJ_T0045374.1 MGP_C57BL6NJ_G0023389.1 mouse_genomes_project 16 88861459 88962564 - MGP_C57BL6NJ_P0045374 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045375.1 MGP_C57BL6NJ_G0023389.1 mouse_genomes_project 16 88955219 88963125 - protein_coding retained_intron MGP_C57BL6NJ_T0010364.1 MGP_C57BL6NJ_G0008449.1 mouse_genomes_project 16 59546416 59546512 - Gm27564 miRNA miRNA MGP_C57BL6NJ_T0044100.1 MGP_C57BL6NJ_G0023042.1 mouse_genomes_project 16 17113393 17114332 - MGP_C57BL6NJ_P0044100 Olfr167 protein_coding protein_coding MGP_C57BL6NJ_T0010336.1 MGP_C57BL6NJ_G0008421.1 mouse_genomes_project 16 15769646 15769734 - Gm24572 miRNA miRNA MGP_C57BL6NJ_T0045328.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78814406 78902742 - MGP_C57BL6NJ_P0045328 Nrip1 protein_coding protein_coding MGP_C57BL6NJ_T0045329.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78817866 78901964 - MGP_C57BL6NJ_P0045329 Nrip1 protein_coding protein_coding MGP_C57BL6NJ_T0045330.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78821650 78850698 - MGP_C57BL6NJ_P0045330 Nrip1 protein_coding protein_coding MGP_C57BL6NJ_T0045331.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78856957 78901952 - Nrip1 protein_coding retained_intron MGP_C57BL6NJ_T0045332.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78857169 78901955 - Nrip1 protein_coding retained_intron MGP_C57BL6NJ_T0045333.1 MGP_C57BL6NJ_G0023374.1 mouse_genomes_project 16 78880310 78901964 - Nrip1 protein_coding retained_intron MGP_C57BL6NJ_T0043395.1 MGP_C57BL6NJ_G0022879.1 mouse_genomes_project 16 1023520 1067559 - MGP_C57BL6NJ_P0043395 Srl protein_coding protein_coding MGP_C57BL6NJ_T0043396.1 MGP_C57BL6NJ_G0022879.1 mouse_genomes_project 16 1023532 1067559 - MGP_C57BL6NJ_P0043396 Srl protein_coding protein_coding MGP_C57BL6NJ_T0043397.1 MGP_C57BL6NJ_G0022879.1 mouse_genomes_project 16 1032163 1092605 - Srl protein_coding processed_transcript MGP_C57BL6NJ_T0043398.1 MGP_C57BL6NJ_G0022879.1 mouse_genomes_project 16 1038187 1067547 - Srl protein_coding retained_intron MGP_C57BL6NJ_T0043329.1 MGP_C57BL6NJ_G0022867.1 mouse_genomes_project 16 338518 346022 - Zfp597 protein_coding processed_transcript MGP_C57BL6NJ_T0043330.1 MGP_C57BL6NJ_G0022867.1 mouse_genomes_project 16 341725 352629 - MGP_C57BL6NJ_P0043330 Zfp597 protein_coding protein_coding MGP_C57BL6NJ_T0043331.1 MGP_C57BL6NJ_G0022867.1 mouse_genomes_project 16 342581 364619 - Zfp597 protein_coding processed_transcript MGP_C57BL6NJ_T0043332.1 MGP_C57BL6NJ_G0022867.1 mouse_genomes_project 16 345487 364675 - Zfp597 protein_coding processed_transcript MGP_C57BL6NJ_T0043333.1 MGP_C57BL6NJ_G0022867.1 mouse_genomes_project 16 346786 351966 - Zfp597 protein_coding retained_intron MGP_C57BL6NJ_T0044527.1 MGP_C57BL6NJ_G0023154.1 mouse_genomes_project 16 31146986 31156279 + MGP_C57BL6NJ_P0044527 Tctex1d2 protein_coding protein_coding MGP_C57BL6NJ_T0044528.1 MGP_C57BL6NJ_G0023154.1 mouse_genomes_project 16 31147017 31156277 + Tctex1d2 protein_coding retained_intron MGP_C57BL6NJ_T0045236.1 MGP_C57BL6NJ_G0023341.1 mouse_genomes_project 16 60158792 60159716 - MGP_C57BL6NJ_P0045236 Olfr202 protein_coding protein_coding MGP_C57BL6NJ_T0101344.1 MGP_C57BL6NJ_G0039390.1 mouse_genomes_project 16 59548305 59548424 - Gm26019 snoRNA snoRNA MGP_C57BL6NJ_T0044376.1 MGP_C57BL6NJ_G0023114.1 mouse_genomes_project 16 25592540 25651654 + MGP_C57BL6NJ_P0044376 Ostn protein_coding protein_coding MGP_C57BL6NJ_T0100030.1 MGP_C57BL6NJ_G0038076.1 mouse_genomes_project 16 34425117 34425270 - Gm23518 snRNA snRNA MGP_C57BL6NJ_T0044629.1 MGP_C57BL6NJ_G0023174.1 mouse_genomes_project 16 32726754 32758239 + MGP_C57BL6NJ_P0044629 Muc13 protein_coding protein_coding MGP_C57BL6NJ_T0044630.1 MGP_C57BL6NJ_G0023174.1 mouse_genomes_project 16 32727084 32758246 + MGP_C57BL6NJ_P0044630 Muc13 protein_coding protein_coding MGP_C57BL6NJ_T0001094.1 MGP_C57BL6NJ_G0001002.1 mouse_genomes_project 16 80006504 80009610 + TEC TEC MGP_C57BL6NJ_T0001095.1 MGP_C57BL6NJ_G0001002.1 mouse_genomes_project 16 80007321 80007683 + TEC pseudogene MGP_C57BL6NJ_T0044332.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21307292 21476993 + MGP_C57BL6NJ_P0044332 St6gal1 protein_coding protein_coding MGP_C57BL6NJ_T0044333.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21308573 21421467 + St6gal1 protein_coding processed_transcript MGP_C57BL6NJ_T0044334.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21308573 21476995 + MGP_C57BL6NJ_P0044334 St6gal1 protein_coding protein_coding MGP_C57BL6NJ_T0044335.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21366117 21421575 + MGP_C57BL6NJ_P0044335 St6gal1 protein_coding protein_coding MGP_C57BL6NJ_T0044336.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21391413 21475240 + MGP_C57BL6NJ_P0044336 St6gal1 protein_coding protein_coding MGP_C57BL6NJ_T0044337.1 MGP_C57BL6NJ_G0023098.1 mouse_genomes_project 16 21474960 21476993 + St6gal1 protein_coding processed_transcript MGP_C57BL6NJ_T0007015.1 MGP_C57BL6NJ_G0005783.1 mouse_genomes_project 16 34544350 34550600 - 1600019K03Rik lincRNA lincRNA MGP_C57BL6NJ_T0045833.1 MGP_C57BL6NJ_G0023514.1 mouse_genomes_project 16 102556581 102573038 + MGP_C57BL6NJ_P0045833 B230307C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0045834.1 MGP_C57BL6NJ_G0023514.1 mouse_genomes_project 16 102556605 102562879 + B230307C23Rik protein_coding retained_intron MGP_C57BL6NJ_T0100047.1 MGP_C57BL6NJ_G0038093.1 mouse_genomes_project 16 55526045 55526152 + Gm22977 snRNA snRNA MGP_C57BL6NJ_T0044616.1 MGP_C57BL6NJ_G0023170.1 mouse_genomes_project 16 32131749 32187849 + MGP_C57BL6NJ_P0044616 Snx4 protein_coding protein_coding MGP_C57BL6NJ_T0010376.1 MGP_C57BL6NJ_G0008461.1 mouse_genomes_project 16 88055205 88055270 + Mir155 miRNA miRNA MGP_C57BL6NJ_T0013470.1 MGP_C57BL6NJ_G0011515.1 mouse_genomes_project 16 30655737 30656020 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045475.1 MGP_C57BL6NJ_G0023444.1 mouse_genomes_project 16 94654568 94664965 - Mis18a protein_coding retained_intron MGP_C57BL6NJ_T0045476.1 MGP_C57BL6NJ_G0023444.1 mouse_genomes_project 16 94654568 94664965 - MGP_C57BL6NJ_P0045476 Mis18a protein_coding protein_coding MGP_C57BL6NJ_T0045477.1 MGP_C57BL6NJ_G0023444.1 mouse_genomes_project 16 94656703 94664700 - Mis18a protein_coding retained_intron MGP_C57BL6NJ_T0044855.1 MGP_C57BL6NJ_G0023233.1 mouse_genomes_project 16 37980220 38108228 - MGP_C57BL6NJ_P0044855 Arhgap31 protein_coding protein_coding MGP_C57BL6NJ_T0044856.1 MGP_C57BL6NJ_G0023233.1 mouse_genomes_project 16 38005686 38107853 - Arhgap31 protein_coding processed_transcript MGP_C57BL6NJ_T0044857.1 MGP_C57BL6NJ_G0023233.1 mouse_genomes_project 16 38023332 38107852 - Arhgap31 protein_coding retained_intron MGP_C57BL6NJ_T0043974.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15507878 15532504 + MGP_C57BL6NJ_P0043974 Dgcr6 protein_coding protein_coding MGP_C57BL6NJ_T0043975.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15507894 15511578 + Dgcr6 protein_coding processed_transcript MGP_C57BL6NJ_T0043976.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15507910 15523900 + Dgcr6 protein_coding processed_transcript MGP_C57BL6NJ_T0043978.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15522550 15532486 + MGP_C57BL6NJ_P0043978 Dgcr6 protein_coding protein_coding MGP_C57BL6NJ_T0043979.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15523785 15532105 + MGP_C57BL6NJ_P0043979 Dgcr6 protein_coding protein_coding MGP_C57BL6NJ_T0043980.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15523834 15532502 + MGP_C57BL6NJ_P0043980 Dgcr6 protein_coding protein_coding MGP_C57BL6NJ_T0043981.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15523839 15532776 + MGP_C57BL6NJ_P0043981 Dgcr6 protein_coding protein_coding MGP_C57BL6NJ_T0043982.1 MGP_C57BL6NJ_G0023015.1 mouse_genomes_project 16 15530623 15532487 + Dgcr6 protein_coding processed_transcript MGP_C57BL6NJ_T0017990.1 MGP_C57BL6NJ_G0015721.1 mouse_genomes_project 16 95629696 95642090 + Gm15964 processed_transcript processed_transcript MGP_C57BL6NJ_T0013482.1 MGP_C57BL6NJ_G0011527.1 mouse_genomes_project 16 39407310 39408308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044067.1 MGP_C57BL6NJ_G0023032.1 mouse_genomes_project 16 16351104 16352518 + MGP_C57BL6NJ_P0044067 Cldn5 protein_coding protein_coding MGP_C57BL6NJ_T0001084.1 MGP_C57BL6NJ_G0000992.1 mouse_genomes_project 16 16825814 16829284 + TEC TEC MGP_C57BL6NJ_T0043988.1 MGP_C57BL6NJ_G0023017.1 mouse_genomes_project 16 15593187 15624101 + MGP_C57BL6NJ_P0043988 Rtn4r protein_coding protein_coding MGP_C57BL6NJ_T0043763.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14046689 14137296 - MGP_C57BL6NJ_P0043763 Spag6l protein_coding protein_coding MGP_C57BL6NJ_T0043764.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14062263 14137303 - Spag6l protein_coding retained_intron MGP_C57BL6NJ_T0043765.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14086026 14137264 - Spag6l protein_coding processed_transcript MGP_C57BL6NJ_T0043766.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14086060 14137327 - Spag6l protein_coding processed_transcript MGP_C57BL6NJ_T0043767.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14123880 14137439 - Spag6l protein_coding processed_transcript MGP_C57BL6NJ_T0043768.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14124152 14137296 - Spag6l protein_coding processed_transcript MGP_C57BL6NJ_T0043769.1 MGP_C57BL6NJ_G0022975.1 mouse_genomes_project 16 14127832 14137290 - Spag6l protein_coding processed_transcript MGP_C57BL6NJ_T0013454.1 MGP_C57BL6NJ_G0011499.1 mouse_genomes_project 16 16602720 16603368 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044346.1 MGP_C57BL6NJ_G0023105.1 mouse_genomes_project 16 22565949 23184938 + MGP_C57BL6NJ_P0044346 Lpp protein_coding protein_coding MGP_C57BL6NJ_T0044347.1 MGP_C57BL6NJ_G0023105.1 mouse_genomes_project 16 22621489 23184938 + MGP_C57BL6NJ_P0044347 Lpp protein_coding protein_coding MGP_C57BL6NJ_T0044348.1 MGP_C57BL6NJ_G0023105.1 mouse_genomes_project 16 22907243 23184938 + MGP_C57BL6NJ_P0044348 Lpp protein_coding protein_coding MGP_C57BL6NJ_T0044103.1 MGP_C57BL6NJ_G0023045.1 mouse_genomes_project 16 17222229 17248689 - MGP_C57BL6NJ_P0044103 protein_coding protein_coding MGP_C57BL6NJ_T0010345.1 MGP_C57BL6NJ_G0008430.1 mouse_genomes_project 16 21172888 21172994 + miRNA miRNA MGP_C57BL6NJ_T0044393.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806215 27861787 - MGP_C57BL6NJ_P0044393 Atp13a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044394.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806390 27942385 - MGP_C57BL6NJ_P0044394 Atp13a4 protein_coding protein_coding MGP_C57BL6NJ_T0044395.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806403 27942271 - MGP_C57BL6NJ_P0044395 Atp13a4 protein_coding protein_coding MGP_C57BL6NJ_T0044396.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806408 27820840 - Atp13a4 protein_coding processed_transcript MGP_C57BL6NJ_T0044397.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806453 27947761 - MGP_C57BL6NJ_P0044397 Atp13a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044398.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27806779 27820136 - Atp13a4 protein_coding retained_intron MGP_C57BL6NJ_T0044399.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27821182 27848817 - Atp13a4 protein_coding retained_intron MGP_C57BL6NJ_T0044400.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27835614 27849854 - MGP_C57BL6NJ_P0044400 Atp13a4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044401.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27835623 27947761 - MGP_C57BL6NJ_P0044401 Atp13a4 protein_coding protein_coding MGP_C57BL6NJ_T0044402.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27941213 27947695 - Atp13a4 protein_coding retained_intron MGP_C57BL6NJ_T0044403.1 MGP_C57BL6NJ_G0023121.1 mouse_genomes_project 16 27941266 27947756 - Atp13a4 protein_coding retained_intron MGP_C57BL6NJ_T0003845.1 MGP_C57BL6NJ_G0003464.1 mouse_genomes_project 16 95952498 95956696 + Gm15976 antisense antisense MGP_C57BL6NJ_T0017956.1 MGP_C57BL6NJ_G0015709.1 mouse_genomes_project 16 24974654 25018724 - Gm20319 processed_transcript processed_transcript MGP_C57BL6NJ_T0017957.1 MGP_C57BL6NJ_G0015709.1 mouse_genomes_project 16 24974952 25018735 - Gm20319 processed_transcript processed_transcript MGP_C57BL6NJ_T0017958.1 MGP_C57BL6NJ_G0015709.1 mouse_genomes_project 16 24991660 25018735 - Gm20319 processed_transcript processed_transcript MGP_C57BL6NJ_T0043954.1 MGP_C57BL6NJ_G0023007.1 mouse_genomes_project 16 15252131 15255220 - MGP_C57BL6NJ_P0043954 Car15 protein_coding protein_coding MGP_C57BL6NJ_T0044778.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36384950 36686226 - MGP_C57BL6NJ_P0044778 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044779.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36385276 36686226 - MGP_C57BL6NJ_P0044779 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044780.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36385664 36686221 - MGP_C57BL6NJ_P0044780 Stxbp5l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044781.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36385664 36686261 - MGP_C57BL6NJ_P0044781 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044782.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36385664 36686265 - MGP_C57BL6NJ_P0044782 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044783.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36405063 36686226 - MGP_C57BL6NJ_P0044783 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044784.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36429322 36477739 - Stxbp5l protein_coding processed_transcript MGP_C57BL6NJ_T0044785.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36492499 36686226 - MGP_C57BL6NJ_P0044785 Stxbp5l protein_coding protein_coding MGP_C57BL6NJ_T0044786.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36618603 36686226 - Stxbp5l protein_coding retained_intron MGP_C57BL6NJ_T0044787.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36675437 36686261 - Stxbp5l protein_coding processed_transcript MGP_C57BL6NJ_T0044788.1 MGP_C57BL6NJ_G0023212.1 mouse_genomes_project 16 36684173 36686226 - Stxbp5l protein_coding retained_intron MGP_C57BL6NJ_T0045304.1 MGP_C57BL6NJ_G0023368.1 mouse_genomes_project 16 74886425 75304308 + MGP_C57BL6NJ_P0045304 Robo1 protein_coding protein_coding MGP_C57BL6NJ_T0044621.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32607843 32648409 + Heg1 protein_coding retained_intron MGP_C57BL6NJ_T0044622.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32607843 32699686 + MGP_C57BL6NJ_P0044622 Heg1 protein_coding protein_coding MGP_C57BL6NJ_T0044623.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32607922 32697553 + MGP_C57BL6NJ_P0044623 Heg1 protein_coding protein_coding MGP_C57BL6NJ_T0044624.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32607989 32699667 + MGP_C57BL6NJ_P0044624 Heg1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044625.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32658766 32667437 + Heg1 protein_coding processed_transcript MGP_C57BL6NJ_T0044626.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32681317 32689122 + Heg1 protein_coding retained_intron MGP_C57BL6NJ_T0044627.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32683654 32696944 + Heg1 protein_coding processed_transcript MGP_C57BL6NJ_T0044628.1 MGP_C57BL6NJ_G0023173.1 mouse_genomes_project 16 32684627 32688968 + Heg1 protein_coding retained_intron MGP_C57BL6NJ_T0044339.1 MGP_C57BL6NJ_G0023100.1 mouse_genomes_project 16 21570292 21643281 - MGP_C57BL6NJ_P0044339 Masp1 protein_coding protein_coding MGP_C57BL6NJ_T0044340.1 MGP_C57BL6NJ_G0023100.1 mouse_genomes_project 16 21588354 21643241 - MGP_C57BL6NJ_P0044340 Masp1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013514.1 MGP_C57BL6NJ_G0011559.1 mouse_genomes_project 16 95550616 95551495 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013443.1 MGP_C57BL6NJ_G0011488.1 mouse_genomes_project 16 11245507 11246111 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045835.1 MGP_C57BL6NJ_G0023515.1 mouse_genomes_project 16 102571666 102572046 + MGP_C57BL6NJ_P0045835 protein_coding protein_coding MGP_C57BL6NJ_T0013502.1 MGP_C57BL6NJ_G0011547.1 mouse_genomes_project 16 66366628 66368456 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044721.1 MGP_C57BL6NJ_G0023203.1 mouse_genomes_project 16 35835256 35899835 - MGP_C57BL6NJ_P0044721 Cd86 protein_coding protein_coding MGP_C57BL6NJ_T0044722.1 MGP_C57BL6NJ_G0023203.1 mouse_genomes_project 16 35835284 35835907 - Cd86 protein_coding processed_transcript MGP_C57BL6NJ_T0044723.1 MGP_C57BL6NJ_G0023203.1 mouse_genomes_project 16 35854691 35876780 - MGP_C57BL6NJ_P0044723 Cd86 protein_coding protein_coding MGP_C57BL6NJ_T0044724.1 MGP_C57BL6NJ_G0023203.1 mouse_genomes_project 16 35894563 35899839 - Cd86 protein_coding processed_transcript MGP_C57BL6NJ_T0043383.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 598238 738086 - MGP_C57BL6NJ_P0043383 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0043384.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 600611 737213 - MGP_C57BL6NJ_P0043384 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0043385.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 603520 606611 - Crebbp protein_coding retained_intron MGP_C57BL6NJ_T0043386.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 604668 605463 - Crebbp protein_coding retained_intron MGP_C57BL6NJ_T0043387.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 605247 613679 - MGP_C57BL6NJ_P0043387 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0043388.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 608706 650687 - MGP_C57BL6NJ_P0043388 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0043389.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 609057 615161 - MGP_C57BL6NJ_P0043389 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0043390.1 MGP_C57BL6NJ_G0022877.1 mouse_genomes_project 16 639356 648668 - MGP_C57BL6NJ_P0043390 Crebbp protein_coding protein_coding MGP_C57BL6NJ_T0010338.1 MGP_C57BL6NJ_G0008423.1 mouse_genomes_project 16 15857966 15858037 - Gm26219 miRNA miRNA MGP_C57BL6NJ_T0010326.1 MGP_C57BL6NJ_G0008411.1 mouse_genomes_project 16 10582344 10582423 + Mir193b miRNA miRNA MGP_C57BL6NJ_T0045174.1 MGP_C57BL6NJ_G0023315.1 mouse_genomes_project 16 58355267 58497694 - MGP_C57BL6NJ_P0045174 Col8a1 protein_coding protein_coding MGP_C57BL6NJ_T0044363.1 MGP_C57BL6NJ_G0023109.1 mouse_genomes_project 16 24625116 24640227 - MGP_C57BL6NJ_P0044363 Cldn1 protein_coding protein_coding MGP_C57BL6NJ_T0044482.1 MGP_C57BL6NJ_G0023140.1 mouse_genomes_project 16 30615367 30616812 - MGP_C57BL6NJ_P0044482 0610012G03Rik protein_coding protein_coding MGP_C57BL6NJ_T0007029.1 MGP_C57BL6NJ_G0005793.1 mouse_genomes_project 16 50990747 50998449 + lincRNA lincRNA MGP_C57BL6NJ_T0007030.1 MGP_C57BL6NJ_G0005793.1 mouse_genomes_project 16 50990816 50998423 + lincRNA lincRNA MGP_C57BL6NJ_T0101315.1 MGP_C57BL6NJ_G0039361.1 mouse_genomes_project 16 15716550 15716676 - Gm25777 snoRNA snoRNA MGP_C57BL6NJ_T0013478.1 MGP_C57BL6NJ_G0011523.1 mouse_genomes_project 16 37889363 37891095 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044266.1 MGP_C57BL6NJ_G0023078.1 mouse_genomes_project 16 19606475 19634629 - MGP_C57BL6NJ_P0044266 Ehhadh protein_coding protein_coding MGP_C57BL6NJ_T0045566.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95699603 95706771 - MGP_C57BL6NJ_P0045566 Donson protein_coding protein_coding MGP_C57BL6NJ_T0045567.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701600 95711101 - Donson protein_coding retained_intron MGP_C57BL6NJ_T0045568.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701600 95711101 - MGP_C57BL6NJ_P0045568 Donson protein_coding protein_coding MGP_C57BL6NJ_T0045569.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701600 95711101 - MGP_C57BL6NJ_P0045569 Donson protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045570.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701857 95710211 - MGP_C57BL6NJ_P0045570 Donson protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045571.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701857 95711053 - MGP_C57BL6NJ_P0045571 Donson protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045572.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95701857 95710211 - MGP_C57BL6NJ_P0045572 Donson protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045573.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95702163 95711039 - MGP_C57BL6NJ_P0045573 Donson protein_coding protein_coding MGP_C57BL6NJ_T0045574.1 MGP_C57BL6NJ_G0023464.1 mouse_genomes_project 16 95702224 95711048 - MGP_C57BL6NJ_P0045574 Donson protein_coding protein_coding MGP_C57BL6NJ_T0003823.1 MGP_C57BL6NJ_G0003448.1 mouse_genomes_project 16 32918760 32919834 + Gm15829 antisense antisense MGP_C57BL6NJ_T0007031.1 MGP_C57BL6NJ_G0005794.1 mouse_genomes_project 16 57881885 57890667 + Gm16892 lincRNA lincRNA MGP_C57BL6NJ_T0044417.1 MGP_C57BL6NJ_G0023125.1 mouse_genomes_project 16 28752924 28764057 - MGP_C57BL6NJ_P0044417 Cpn2 protein_coding protein_coding MGP_C57BL6NJ_T0101339.1 MGP_C57BL6NJ_G0039385.1 mouse_genomes_project 16 53824558 53824666 - Gm22459 snoRNA snoRNA MGP_C57BL6NJ_T0043550.1 MGP_C57BL6NJ_G0022920.1 mouse_genomes_project 16 7299412 7342561 - MGP_C57BL6NJ_P0043550 Tekt5 protein_coding protein_coding MGP_C57BL6NJ_T0043551.1 MGP_C57BL6NJ_G0022920.1 mouse_genomes_project 16 7302640 7342519 - MGP_C57BL6NJ_P0043551 Tekt5 protein_coding protein_coding MGP_C57BL6NJ_T0100017.1 MGP_C57BL6NJ_G0038063.1 mouse_genomes_project 16 14562729 14562836 - Gm22129 snRNA snRNA MGP_C57BL6NJ_T0102892.1 MGP_C57BL6NJ_G0040686.1 mouse_genomes_project 16 97801339 97808391 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100055.1 MGP_C57BL6NJ_G0038101.1 mouse_genomes_project 16 81331047 81331154 + Gm24861 snRNA snRNA MGP_C57BL6NJ_T0100049.1 MGP_C57BL6NJ_G0038095.1 mouse_genomes_project 16 56397383 56397483 - Gm26369 snRNA snRNA MGP_C57BL6NJ_T0013433.1 MGP_C57BL6NJ_G0011478.1 mouse_genomes_project 16 1090130 1090518 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003831.1 MGP_C57BL6NJ_G0003454.1 mouse_genomes_project 16 38235403 38235740 + antisense antisense MGP_C57BL6NJ_T0043400.1 MGP_C57BL6NJ_G0022881.1 mouse_genomes_project 16 1156999 1195312 + MGP_C57BL6NJ_P0043400 Glis2 protein_coding protein_coding MGP_C57BL6NJ_T0043401.1 MGP_C57BL6NJ_G0022881.1 mouse_genomes_project 16 1163414 1176058 + MGP_C57BL6NJ_P0043401 Glis2 protein_coding protein_coding MGP_C57BL6NJ_T0043402.1 MGP_C57BL6NJ_G0022881.1 mouse_genomes_project 16 1170915 1195297 + Glis2 protein_coding retained_intron MGP_C57BL6NJ_T0043403.1 MGP_C57BL6NJ_G0022881.1 mouse_genomes_project 16 1177054 1193011 + Glis2 protein_coding retained_intron MGP_C57BL6NJ_T0043404.1 MGP_C57BL6NJ_G0022881.1 mouse_genomes_project 16 1177272 1205358 + Glis2 protein_coding processed_transcript MGP_C57BL6NJ_T0010382.1 MGP_C57BL6NJ_G0008467.1 mouse_genomes_project 16 98422300 98422410 - Gm23062 miRNA miRNA MGP_C57BL6NJ_T0043905.1 MGP_C57BL6NJ_G0023001.1 mouse_genomes_project 16 14967913 14971629 - Slc7a4 protein_coding retained_intron MGP_C57BL6NJ_T0043906.1 MGP_C57BL6NJ_G0023001.1 mouse_genomes_project 16 14968234 14971656 - MGP_C57BL6NJ_P0043906 Slc7a4 protein_coding protein_coding MGP_C57BL6NJ_T0043907.1 MGP_C57BL6NJ_G0023001.1 mouse_genomes_project 16 14970360 14971589 - MGP_C57BL6NJ_P0043907 Slc7a4 protein_coding protein_coding MGP_C57BL6NJ_T0043908.1 MGP_C57BL6NJ_G0023001.1 mouse_genomes_project 16 14970470 14971178 - MGP_C57BL6NJ_P0043908 Slc7a4 protein_coding protein_coding MGP_C57BL6NJ_T0043909.1 MGP_C57BL6NJ_G0023001.1 mouse_genomes_project 16 14970646 14971629 - MGP_C57BL6NJ_P0043909 Slc7a4 protein_coding protein_coding MGP_C57BL6NJ_T0100041.1 MGP_C57BL6NJ_G0038087.1 mouse_genomes_project 16 39810452 39810546 + Gm22543 snRNA snRNA MGP_C57BL6NJ_T0003838.1 MGP_C57BL6NJ_G0003459.1 mouse_genomes_project 16 49893046 49933628 - Gm15518 antisense antisense MGP_C57BL6NJ_T0001086.1 MGP_C57BL6NJ_G0000994.1 mouse_genomes_project 16 22128144 22130379 + TEC TEC MGP_C57BL6NJ_T0045553.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95668719 95701543 + MGP_C57BL6NJ_P0045553 Son protein_coding protein_coding MGP_C57BL6NJ_T0045554.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95669092 95701531 + MGP_C57BL6NJ_P0045554 Son protein_coding protein_coding MGP_C57BL6NJ_T0045555.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95669092 95688044 + MGP_C57BL6NJ_P0045555 Son protein_coding protein_coding MGP_C57BL6NJ_T0045556.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95669092 95701531 + MGP_C57BL6NJ_P0045556 Son protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045557.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95669093 95686369 + MGP_C57BL6NJ_P0045557 Son protein_coding protein_coding MGP_C57BL6NJ_T0045558.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95669098 95701557 + MGP_C57BL6NJ_P0045558 Son protein_coding protein_coding MGP_C57BL6NJ_T0045559.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95682278 95701528 + MGP_C57BL6NJ_P0045559 Son protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045560.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95686555 95694477 + Son protein_coding processed_transcript MGP_C57BL6NJ_T0045561.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95693684 95695046 + Son protein_coding processed_transcript MGP_C57BL6NJ_T0045562.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95695776 95699948 + Son protein_coding processed_transcript MGP_C57BL6NJ_T0045563.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95696006 95700456 + Son protein_coding processed_transcript MGP_C57BL6NJ_T0045564.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95696442 95700837 + Son protein_coding processed_transcript MGP_C57BL6NJ_T0045565.1 MGP_C57BL6NJ_G0023463.1 mouse_genomes_project 16 95697267 95699770 + Son protein_coding retained_intron MGP_C57BL6NJ_T0045652.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98054400 98102515 + MGP_C57BL6NJ_P0045652 Morc3 protein_coding protein_coding MGP_C57BL6NJ_T0045653.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98054400 98102512 + MGP_C57BL6NJ_P0045653 Morc3 protein_coding protein_coding MGP_C57BL6NJ_T0045654.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98054514 98067430 + Morc3 protein_coding retained_intron MGP_C57BL6NJ_T0045655.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98054536 98101470 + MGP_C57BL6NJ_P0045655 Morc3 protein_coding protein_coding MGP_C57BL6NJ_T0045656.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98054542 98085360 + MGP_C57BL6NJ_P0045656 Morc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045657.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98067312 98071912 + Morc3 protein_coding processed_transcript MGP_C57BL6NJ_T0045658.1 MGP_C57BL6NJ_G0023481.1 mouse_genomes_project 16 98076468 98078619 + Morc3 protein_coding retained_intron MGP_C57BL6NJ_T0044021.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15841527 15907125 + MGP_C57BL6NJ_P0044021 Arvcf protein_coding protein_coding MGP_C57BL6NJ_T0044022.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15841619 15907121 + MGP_C57BL6NJ_P0044022 Arvcf protein_coding protein_coding MGP_C57BL6NJ_T0044023.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15841619 15907125 + MGP_C57BL6NJ_P0044023 Arvcf protein_coding protein_coding MGP_C57BL6NJ_T0044024.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15878480 15906796 + MGP_C57BL6NJ_P0044024 Arvcf protein_coding protein_coding MGP_C57BL6NJ_T0044025.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15891753 15907125 + MGP_C57BL6NJ_P0044025 Arvcf protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044026.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15891754 15906305 + MGP_C57BL6NJ_P0044026 Arvcf protein_coding protein_coding MGP_C57BL6NJ_T0044027.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15896889 15899055 + Arvcf protein_coding processed_transcript MGP_C57BL6NJ_T0044028.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15899138 15900689 + Arvcf protein_coding retained_intron MGP_C57BL6NJ_T0044029.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15901180 15903480 + Arvcf protein_coding processed_transcript MGP_C57BL6NJ_T0044030.1 MGP_C57BL6NJ_G0023024.1 mouse_genomes_project 16 15903497 15904507 + Arvcf protein_coding retained_intron MGP_C57BL6NJ_T0045818.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102336846 102401413 - MGP_C57BL6NJ_P0045818 Prdm15 protein_coding protein_coding MGP_C57BL6NJ_T0045819.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102336899 102402036 - MGP_C57BL6NJ_P0045819 Prdm15 protein_coding protein_coding MGP_C57BL6NJ_T0045820.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102336901 102390146 - MGP_C57BL6NJ_P0045820 Prdm15 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045821.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102337256 102401969 - MGP_C57BL6NJ_P0045821 Prdm15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045822.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102337711 102347328 - Prdm15 protein_coding retained_intron MGP_C57BL6NJ_T0045823.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102339897 102351889 - Prdm15 protein_coding processed_transcript MGP_C57BL6NJ_T0045824.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102341102 102344945 - Prdm15 protein_coding retained_intron MGP_C57BL6NJ_T0045825.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102368990 102379915 - Prdm15 protein_coding retained_intron MGP_C57BL6NJ_T0045826.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102385552 102390154 - Prdm15 protein_coding retained_intron MGP_C57BL6NJ_T0045827.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102385970 102399071 - MGP_C57BL6NJ_P0045827 Prdm15 protein_coding protein_coding MGP_C57BL6NJ_T0045828.1 MGP_C57BL6NJ_G0023511.1 mouse_genomes_project 16 102387867 102401413 - MGP_C57BL6NJ_P0045828 Prdm15 protein_coding protein_coding MGP_C57BL6NJ_T0043777.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14183970 14200563 + MGP_C57BL6NJ_P0043777 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043778.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14183991 14207699 + MGP_C57BL6NJ_P0043778 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043779.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184001 14194046 + MGP_C57BL6NJ_P0043779 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043780.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184008 14198247 + MGP_C57BL6NJ_P0043780 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043781.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184015 14207704 + MGP_C57BL6NJ_P0043781 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043782.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184020 14200180 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043783.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184021 14195370 + MGP_C57BL6NJ_P0043783 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043784.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184034 14194061 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043785.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184041 14193773 + MGP_C57BL6NJ_P0043785 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043786.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184051 14207704 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043787.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184074 14193708 + MGP_C57BL6NJ_P0043787 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043788.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14184199 14194188 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043789.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14198162 14207687 + MGP_C57BL6NJ_P0043789 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043790.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14198932 14207704 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043791.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14200239 14201420 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043792.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14201357 14202424 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043793.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14201623 14202601 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043794.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14202552 14207689 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0043795.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14204939 14207214 + MGP_C57BL6NJ_P0043795 Top3b protein_coding protein_coding MGP_C57BL6NJ_T0043796.1 MGP_C57BL6NJ_G0022979.1 mouse_genomes_project 16 14206215 14207133 + Top3b protein_coding retained_intron MGP_C57BL6NJ_T0045386.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038001 91045097 + MGP_C57BL6NJ_P0045386 Usp16 protein_coding protein_coding MGP_C57BL6NJ_T0045387.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038043 91044614 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045388.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038059 91054072 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045389.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038065 91049394 + Usp16 protein_coding processed_transcript MGP_C57BL6NJ_T0045390.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038074 91066352 + MGP_C57BL6NJ_P0045390 Usp16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045391.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91038100 91066359 + MGP_C57BL6NJ_P0045391 Usp16 protein_coding protein_coding MGP_C57BL6NJ_T0045392.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91055901 91062955 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045393.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91056136 91062249 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045394.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91064479 91066222 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045395.1 MGP_C57BL6NJ_G0023395.1 mouse_genomes_project 16 91065892 91066340 + Usp16 protein_coding retained_intron MGP_C57BL6NJ_T0045396.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91066367 91079272 - MGP_C57BL6NJ_P0045396 Cct8 protein_coding protein_coding MGP_C57BL6NJ_T0045397.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91067029 91079187 - MGP_C57BL6NJ_P0045397 Cct8 protein_coding protein_coding MGP_C57BL6NJ_T0045398.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91067029 91079187 - MGP_C57BL6NJ_P0045398 Cct8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045399.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91067952 91072180 - MGP_C57BL6NJ_P0045399 Cct8 protein_coding protein_coding MGP_C57BL6NJ_T0045400.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91068775 91069407 - Cct8 protein_coding retained_intron MGP_C57BL6NJ_T0045401.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91068915 91069692 - Cct8 protein_coding retained_intron MGP_C57BL6NJ_T0045402.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91069063 91069834 - Cct8 protein_coding retained_intron MGP_C57BL6NJ_T0045403.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91072181 91074785 - Cct8 protein_coding processed_transcript MGP_C57BL6NJ_T0045404.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91072267 91079258 - MGP_C57BL6NJ_P0045404 Cct8 protein_coding protein_coding MGP_C57BL6NJ_T0045405.1 MGP_C57BL6NJ_G0023396.1 mouse_genomes_project 16 91073824 91079103 - MGP_C57BL6NJ_P0045405 Cct8 protein_coding protein_coding MGP_C57BL6NJ_T0044164.1 MGP_C57BL6NJ_G0023062.1 mouse_genomes_project 16 18236684 18249491 + MGP_C57BL6NJ_P0044164 Abcf3 protein_coding protein_coding MGP_C57BL6NJ_T0044165.1 MGP_C57BL6NJ_G0023062.1 mouse_genomes_project 16 18237775 18239760 + Abcf3 protein_coding retained_intron MGP_C57BL6NJ_T0044166.1 MGP_C57BL6NJ_G0023062.1 mouse_genomes_project 16 18238684 18246964 + Abcf3 protein_coding retained_intron MGP_C57BL6NJ_T0044167.1 MGP_C57BL6NJ_G0023062.1 mouse_genomes_project 16 18247434 18248382 + Abcf3 protein_coding retained_intron MGP_C57BL6NJ_T0044168.1 MGP_C57BL6NJ_G0023062.1 mouse_genomes_project 16 18247747 18248930 + Abcf3 protein_coding retained_intron MGP_C57BL6NJ_T0043485.1 MGP_C57BL6NJ_G0022903.1 mouse_genomes_project 16 1833847 1844319 - MGP_C57BL6NJ_P0043485 AU021092 protein_coding protein_coding MGP_C57BL6NJ_T0044703.1 MGP_C57BL6NJ_G0023192.1 mouse_genomes_project 16 35146668 35148452 + MGP_C57BL6NJ_P0044703 Wdr5b protein_coding protein_coding MGP_C57BL6NJ_T0044578.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665093 31682146 + Fyttd1 protein_coding processed_transcript MGP_C57BL6NJ_T0044579.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665374 31701710 + MGP_C57BL6NJ_P0044579 Fyttd1 protein_coding protein_coding MGP_C57BL6NJ_T0044580.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665377 31701798 + MGP_C57BL6NJ_P0044580 Fyttd1 protein_coding protein_coding MGP_C57BL6NJ_T0044581.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665406 31686378 + Fyttd1 protein_coding retained_intron MGP_C57BL6NJ_T0044582.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665406 31688371 + Fyttd1 protein_coding processed_transcript MGP_C57BL6NJ_T0044583.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31665444 31689972 + Fyttd1 protein_coding retained_intron MGP_C57BL6NJ_T0044584.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31672063 31698402 + MGP_C57BL6NJ_P0044584 Fyttd1 protein_coding protein_coding MGP_C57BL6NJ_T0044585.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31686212 31698551 + Fyttd1 protein_coding processed_transcript MGP_C57BL6NJ_T0044586.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31689870 31698474 + Fyttd1 protein_coding retained_intron MGP_C57BL6NJ_T0044587.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31691344 31698410 + Fyttd1 protein_coding retained_intron MGP_C57BL6NJ_T0044588.1 MGP_C57BL6NJ_G0023164.1 mouse_genomes_project 16 31693219 31698376 + Fyttd1 protein_coding retained_intron MGP_C57BL6NJ_T0043478.1 MGP_C57BL6NJ_G0022899.1 mouse_genomes_project 16 1663966 1701893 + MGP_C57BL6NJ_P0043478 Ubn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0043696.1 MGP_C57BL6NJ_G0022954.1 mouse_genomes_project 16 11153259 11158294 - MGP_C57BL6NJ_P0043696 Ifitm7 protein_coding protein_coding MGP_C57BL6NJ_T0043697.1 MGP_C57BL6NJ_G0022954.1 mouse_genomes_project 16 11154356 11156179 - MGP_C57BL6NJ_P0043697 Ifitm7 protein_coding protein_coding MGP_C57BL6NJ_T0010371.1 MGP_C57BL6NJ_G0008456.1 mouse_genomes_project 16 78228562 78228672 + Gm22923 miRNA miRNA MGP_C57BL6NJ_T0010331.1 MGP_C57BL6NJ_G0008416.1 mouse_genomes_project 16 11351544 11351611 + Mir484 miRNA miRNA MGP_C57BL6NJ_T0003833.1 MGP_C57BL6NJ_G0003456.1 mouse_genomes_project 16 45540552 45543300 + antisense antisense MGP_C57BL6NJ_T0044933.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 43970345 44067683 - MGP_C57BL6NJ_P0044933 Sidt1 protein_coding protein_coding MGP_C57BL6NJ_T0044934.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 43970345 44000505 - MGP_C57BL6NJ_P0044934 Sidt1 protein_coding protein_coding MGP_C57BL6NJ_T0044935.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 43970690 44067888 - MGP_C57BL6NJ_P0044935 Sidt1 protein_coding protein_coding MGP_C57BL6NJ_T0044936.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 44006115 44015323 - Sidt1 protein_coding retained_intron MGP_C57BL6NJ_T0044937.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 44014882 44015982 - MGP_C57BL6NJ_P0044937 Sidt1 protein_coding protein_coding MGP_C57BL6NJ_T0044938.1 MGP_C57BL6NJ_G0023250.1 mouse_genomes_project 16 44017733 44067233 - Sidt1 protein_coding processed_transcript MGP_C57BL6NJ_T0101323.1 MGP_C57BL6NJ_G0039369.1 mouse_genomes_project 16 21175183 21175312 + Gm26447 snoRNA snoRNA MGP_C57BL6NJ_T0044836.1 MGP_C57BL6NJ_G0023231.1 mouse_genomes_project 16 37901934 37928716 - MGP_C57BL6NJ_P0044836 Poglut1 protein_coding protein_coding MGP_C57BL6NJ_T0044837.1 MGP_C57BL6NJ_G0023231.1 mouse_genomes_project 16 37901937 37928680 - Poglut1 protein_coding retained_intron MGP_C57BL6NJ_T0044838.1 MGP_C57BL6NJ_G0023231.1 mouse_genomes_project 16 37906253 37909284 - Poglut1 protein_coding retained_intron MGP_C57BL6NJ_T0044839.1 MGP_C57BL6NJ_G0023231.1 mouse_genomes_project 16 37910888 37914757 - Poglut1 protein_coding retained_intron MGP_C57BL6NJ_T0044840.1 MGP_C57BL6NJ_G0023231.1 mouse_genomes_project 16 37926477 37928680 - Poglut1 protein_coding retained_intron MGP_C57BL6NJ_T0011666.1 MGP_C57BL6NJ_G0009751.1 mouse_genomes_project 16 5241395 5241684 - Gm25782 misc_RNA misc_RNA MGP_C57BL6NJ_T0044619.1 MGP_C57BL6NJ_G0023172.1 mouse_genomes_project 16 32425654 32585204 + MGP_C57BL6NJ_P0044619 Slc12a8 protein_coding protein_coding MGP_C57BL6NJ_T0044620.1 MGP_C57BL6NJ_G0023172.1 mouse_genomes_project 16 32515281 32585198 + MGP_C57BL6NJ_P0044620 Slc12a8 protein_coding protein_coding MGP_C57BL6NJ_T0045209.1 MGP_C57BL6NJ_G0023325.1 mouse_genomes_project 16 59632888 59635890 - MGP_C57BL6NJ_P0045209 Olfr175-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0045270.1 MGP_C57BL6NJ_G0023354.1 mouse_genomes_project 16 64090779 64100448 + MGP_C57BL6NJ_P0045270 Stx19 protein_coding protein_coding MGP_C57BL6NJ_T0007039.1 MGP_C57BL6NJ_G0005800.1 mouse_genomes_project 16 88044236 88056311 + Mir155hg lincRNA lincRNA MGP_C57BL6NJ_T0007040.1 MGP_C57BL6NJ_G0005800.1 mouse_genomes_project 16 88054088 88056311 + Mir155hg lincRNA lincRNA MGP_C57BL6NJ_T0013463.1 MGP_C57BL6NJ_G0011508.1 mouse_genomes_project 16 21267618 21268645 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003801.1 MGP_C57BL6NJ_G0003430.1 mouse_genomes_project 16 7635160 7649326 - Gm15558 antisense antisense MGP_C57BL6NJ_T0101327.1 MGP_C57BL6NJ_G0039373.1 mouse_genomes_project 16 30740147 30740280 + Gm26419 snoRNA snoRNA MGP_C57BL6NJ_T0045431.1 MGP_C57BL6NJ_G0023414.1 mouse_genomes_project 16 92569474 92569967 - MGP_C57BL6NJ_P0045431 Krtap19-1 protein_coding protein_coding MGP_C57BL6NJ_T0043690.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11077560 11119222 + MGP_C57BL6NJ_P0043690 Mpv17l protein_coding protein_coding MGP_C57BL6NJ_T0043691.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11110659 11118733 + MGP_C57BL6NJ_P0043691 Mpv17l protein_coding protein_coding MGP_C57BL6NJ_T0043692.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11110724 11118592 + MGP_C57BL6NJ_P0043692 Mpv17l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043693.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11110731 11116889 + MGP_C57BL6NJ_P0043693 Mpv17l protein_coding protein_coding MGP_C57BL6NJ_T0043694.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11110743 11116935 + MGP_C57BL6NJ_P0043694 Mpv17l protein_coding protein_coding MGP_C57BL6NJ_T0043695.1 MGP_C57BL6NJ_G0022953.1 mouse_genomes_project 16 11111123 11116855 + MGP_C57BL6NJ_P0043695 Mpv17l protein_coding protein_coding MGP_C57BL6NJ_T0045427.1 MGP_C57BL6NJ_G0023412.1 mouse_genomes_project 16 92517867 92525025 - MGP_C57BL6NJ_P0045427 Krtap14 protein_coding protein_coding MGP_C57BL6NJ_T0045429.1 MGP_C57BL6NJ_G0023412.1 mouse_genomes_project 16 92524492 92525348 - MGP_C57BL6NJ_P0045429 Krtap14 protein_coding protein_coding MGP_C57BL6NJ_T0013481.1 MGP_C57BL6NJ_G0011526.1 mouse_genomes_project 16 38218137 38218531 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044302.1 MGP_C57BL6NJ_G0023093.1 mouse_genomes_project 16 21076130 21118014 + Kng1 protein_coding processed_transcript MGP_C57BL6NJ_T0044303.1 MGP_C57BL6NJ_G0023093.1 mouse_genomes_project 16 21076130 21118014 + MGP_C57BL6NJ_P0044303 Kng1 protein_coding protein_coding MGP_C57BL6NJ_T0044304.1 MGP_C57BL6NJ_G0023093.1 mouse_genomes_project 16 21076130 21118014 + MGP_C57BL6NJ_P0044304 Kng1 protein_coding protein_coding MGP_C57BL6NJ_T0043641.1 MGP_C57BL6NJ_G0022943.1 mouse_genomes_project 16 9036748 9048044 + Shisa9 protein_coding processed_transcript MGP_C57BL6NJ_T0043642.1 MGP_C57BL6NJ_G0022943.1 mouse_genomes_project 16 9037216 9364427 + MGP_C57BL6NJ_P0043642 Shisa9 protein_coding protein_coding MGP_C57BL6NJ_T0043643.1 MGP_C57BL6NJ_G0022943.1 mouse_genomes_project 16 9037216 9365380 + MGP_C57BL6NJ_P0043643 Shisa9 protein_coding protein_coding MGP_C57BL6NJ_T0043644.1 MGP_C57BL6NJ_G0022943.1 mouse_genomes_project 16 9037313 9042739 + Shisa9 protein_coding processed_transcript MGP_C57BL6NJ_T0044301.1 MGP_C57BL6NJ_G0023092.1 mouse_genomes_project 16 20924204 20941722 + MGP_C57BL6NJ_P0044301 Hrg protein_coding protein_coding MGP_C57BL6NJ_T0045802.1 MGP_C57BL6NJ_G0023503.1 mouse_genomes_project 16 100902375 100923697 - MGP_C57BL6NJ_P0045802 Itgb2l protein_coding protein_coding MGP_C57BL6NJ_T0045803.1 MGP_C57BL6NJ_G0023503.1 mouse_genomes_project 16 100902379 100923692 - MGP_C57BL6NJ_P0045803 Itgb2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045804.1 MGP_C57BL6NJ_G0023503.1 mouse_genomes_project 16 100902463 100923690 - MGP_C57BL6NJ_P0045804 Itgb2l protein_coding protein_coding MGP_C57BL6NJ_T0045805.1 MGP_C57BL6NJ_G0023503.1 mouse_genomes_project 16 100906817 100909232 - Itgb2l protein_coding processed_transcript MGP_C57BL6NJ_T0007007.1 MGP_C57BL6NJ_G0005775.1 mouse_genomes_project 16 22564211 22566188 - Lppos lincRNA lincRNA MGP_C57BL6NJ_T0043635.1 MGP_C57BL6NJ_G0022941.1 mouse_genomes_project 16 8852563 8954418 - MGP_C57BL6NJ_P0043635 Cpped1 protein_coding protein_coding MGP_C57BL6NJ_T0043636.1 MGP_C57BL6NJ_G0022941.1 mouse_genomes_project 16 8852569 8954417 - MGP_C57BL6NJ_P0043636 Cpped1 protein_coding protein_coding MGP_C57BL6NJ_T0043637.1 MGP_C57BL6NJ_G0022941.1 mouse_genomes_project 16 8877194 8954391 - Cpped1 protein_coding retained_intron MGP_C57BL6NJ_T0043638.1 MGP_C57BL6NJ_G0022941.1 mouse_genomes_project 16 8878183 8954393 - MGP_C57BL6NJ_P0043638 Cpped1 protein_coding protein_coding MGP_C57BL6NJ_T0043639.1 MGP_C57BL6NJ_G0022941.1 mouse_genomes_project 16 8927554 8954440 - MGP_C57BL6NJ_P0043639 Cpped1 protein_coding protein_coding MGP_C57BL6NJ_T0101357.1 MGP_C57BL6NJ_G0039403.1 mouse_genomes_project 16 90388079 90388204 + Gm25715 snoRNA snoRNA MGP_C57BL6NJ_T0101333.1 MGP_C57BL6NJ_G0039379.1 mouse_genomes_project 16 37563799 37563928 - Gm27931 snoRNA snoRNA MGP_C57BL6NJ_T0100034.1 MGP_C57BL6NJ_G0038080.1 mouse_genomes_project 16 35427241 35427345 - Gm24569 snRNA snRNA MGP_C57BL6NJ_T0045717.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98874330 99012358 + MGP_C57BL6NJ_P0045717 Dyrk1a protein_coding protein_coding MGP_C57BL6NJ_T0045718.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98874799 99009495 + MGP_C57BL6NJ_P0045718 Dyrk1a protein_coding protein_coding MGP_C57BL6NJ_T0045719.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98875184 98980614 + MGP_C57BL6NJ_P0045719 Dyrk1a protein_coding protein_coding MGP_C57BL6NJ_T0045720.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98875227 99012808 + MGP_C57BL6NJ_P0045720 Dyrk1a protein_coding protein_coding MGP_C57BL6NJ_T0045721.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98875227 98983498 + MGP_C57BL6NJ_P0045721 Dyrk1a protein_coding protein_coding MGP_C57BL6NJ_T0045722.1 MGP_C57BL6NJ_G0023490.1 mouse_genomes_project 16 98983562 98996775 + Dyrk1a protein_coding retained_intron MGP_C57BL6NJ_T0003797.1 MGP_C57BL6NJ_G0003427.1 mouse_genomes_project 16 533288 537969 - Gm15879 antisense antisense MGP_C57BL6NJ_T0003798.1 MGP_C57BL6NJ_G0003427.1 mouse_genomes_project 16 534820 538297 - Gm15879 antisense antisense MGP_C57BL6NJ_T0045170.1 MGP_C57BL6NJ_G0023313.1 mouse_genomes_project 16 58018367 58335488 - MGP_C57BL6NJ_P0045170 Cmss1 protein_coding protein_coding MGP_C57BL6NJ_T0044604.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912113 31915850 + MGP_C57BL6NJ_P0044604 Rpl35a protein_coding protein_coding MGP_C57BL6NJ_T0044605.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912126 31915837 + MGP_C57BL6NJ_P0044605 Rpl35a protein_coding protein_coding MGP_C57BL6NJ_T0044606.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912142 31915836 + Rpl35a protein_coding retained_intron MGP_C57BL6NJ_T0044607.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912184 31913191 + Rpl35a protein_coding retained_intron MGP_C57BL6NJ_T0044608.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912187 31915826 + MGP_C57BL6NJ_P0044608 Rpl35a protein_coding protein_coding MGP_C57BL6NJ_T0044609.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912466 31915836 + MGP_C57BL6NJ_P0044609 Rpl35a protein_coding protein_coding MGP_C57BL6NJ_T0044610.1 MGP_C57BL6NJ_G0023167.1 mouse_genomes_project 16 31912678 31915817 + MGP_C57BL6NJ_P0044610 Rpl35a protein_coding protein_coding MGP_C57BL6NJ_T0013430.1 MGP_C57BL6NJ_G0011475.1 mouse_genomes_project 16 409018 409584 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045279.1 MGP_C57BL6NJ_G0023359.1 mouse_genomes_project 16 66223259 66293254 - MGP_C57BL6NJ_P0045279 protein_coding protein_coding MGP_C57BL6NJ_T0045118.1 MGP_C57BL6NJ_G0023299.1 mouse_genomes_project 16 56611382 56648151 + MGP_C57BL6NJ_P0045118 Zbtb11 protein_coding protein_coding MGP_C57BL6NJ_T0045119.1 MGP_C57BL6NJ_G0023299.1 mouse_genomes_project 16 56626406 56629568 + Zbtb11 protein_coding retained_intron MGP_C57BL6NJ_T0045120.1 MGP_C57BL6NJ_G0023299.1 mouse_genomes_project 16 56644424 56648151 + Zbtb11 protein_coding retained_intron MGP_C57BL6NJ_T0001091.1 MGP_C57BL6NJ_G0000999.1 mouse_genomes_project 16 59097638 59099925 - TEC TEC MGP_C57BL6NJ_T0013495.1 MGP_C57BL6NJ_G0011540.1 mouse_genomes_project 16 57627706 57628649 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044858.1 MGP_C57BL6NJ_G0023234.1 mouse_genomes_project 16 38135610 38169027 + MGP_C57BL6NJ_P0044858 B4galt4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044859.1 MGP_C57BL6NJ_G0023234.1 mouse_genomes_project 16 38135624 38169033 + MGP_C57BL6NJ_P0044859 B4galt4 protein_coding protein_coding MGP_C57BL6NJ_T0044860.1 MGP_C57BL6NJ_G0023234.1 mouse_genomes_project 16 38160983 38168490 + MGP_C57BL6NJ_P0044860 B4galt4 protein_coding protein_coding MGP_C57BL6NJ_T0044861.1 MGP_C57BL6NJ_G0023234.1 mouse_genomes_project 16 38163069 38166457 + B4galt4 protein_coding retained_intron MGP_C57BL6NJ_T0010353.1 MGP_C57BL6NJ_G0008438.1 mouse_genomes_project 16 39878932 39879034 - Gm27887 miRNA miRNA MGP_C57BL6NJ_T0044715.1 MGP_C57BL6NJ_G0023200.1 mouse_genomes_project 16 35488241 35492852 + MGP_C57BL6NJ_P0044715 Gm4758 protein_coding protein_coding MGP_C57BL6NJ_T0003844.1 MGP_C57BL6NJ_G0003463.1 mouse_genomes_project 16 94947693 94951828 + Gm15965 antisense antisense MGP_C57BL6NJ_T0003835.1 MGP_C57BL6NJ_G0003458.1 mouse_genomes_project 16 45773357 45799083 + Gm15638 antisense antisense MGP_C57BL6NJ_T0003836.1 MGP_C57BL6NJ_G0003458.1 mouse_genomes_project 16 45773364 45785032 + Gm15638 antisense antisense MGP_C57BL6NJ_T0003837.1 MGP_C57BL6NJ_G0003458.1 mouse_genomes_project 16 45773369 45776426 + Gm15638 antisense antisense MGP_C57BL6NJ_T0043581.1 MGP_C57BL6NJ_G0022928.1 mouse_genomes_project 16 7765296 7765706 - MGP_C57BL6NJ_P0043581 Prm3 protein_coding protein_coding MGP_C57BL6NJ_T0043966.1 MGP_C57BL6NJ_G0023012.1 mouse_genomes_project 16 15329836 15341883 - MGP_C57BL6NJ_P0043966 Dgcr14 protein_coding protein_coding MGP_C57BL6NJ_T0044064.1 MGP_C57BL6NJ_G0023030.1 mouse_genomes_project 16 16150949 16153034 - MGP_C57BL6NJ_P0044064 Gp1bb protein_coding protein_coding MGP_C57BL6NJ_T0044065.1 MGP_C57BL6NJ_G0023030.1 mouse_genomes_project 16 16151352 16151997 - MGP_C57BL6NJ_P0044065 Gp1bb protein_coding protein_coding MGP_C57BL6NJ_T0045457.1 MGP_C57BL6NJ_G0023438.1 mouse_genomes_project 16 93311381 93312001 - MGP_C57BL6NJ_P0045457 Krtap7-1 protein_coding protein_coding MGP_C57BL6NJ_T0045043.1 MGP_C57BL6NJ_G0023273.1 mouse_genomes_project 16 45786975 45839818 - MGP_C57BL6NJ_P0045043 Plcxd2 protein_coding protein_coding MGP_C57BL6NJ_T0044004.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15731400 15774343 - MGP_C57BL6NJ_P0044004 Dgcr8 protein_coding protein_coding MGP_C57BL6NJ_T0044005.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15731409 15774346 - MGP_C57BL6NJ_P0044005 Dgcr8 protein_coding protein_coding MGP_C57BL6NJ_T0044006.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15732393 15748033 - Dgcr8 protein_coding processed_transcript MGP_C57BL6NJ_T0044007.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15732894 15734551 - Dgcr8 protein_coding processed_transcript MGP_C57BL6NJ_T0044008.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15756570 15769660 - Dgcr8 protein_coding retained_intron MGP_C57BL6NJ_T0044009.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15756753 15765343 - Dgcr8 protein_coding retained_intron MGP_C57BL6NJ_T0044010.1 MGP_C57BL6NJ_G0023022.1 mouse_genomes_project 16 15772679 15774267 - Dgcr8 protein_coding processed_transcript MGP_C57BL6NJ_T0044831.1 MGP_C57BL6NJ_G0023227.1 mouse_genomes_project 16 37761086 37802705 - MGP_C57BL6NJ_P0044831 Pla1a protein_coding protein_coding MGP_C57BL6NJ_T0044227.1 MGP_C57BL6NJ_G0023069.1 mouse_genomes_project 16 18395312 18401314 + MGP_C57BL6NJ_P0044227 Fam131a protein_coding protein_coding MGP_C57BL6NJ_T0044228.1 MGP_C57BL6NJ_G0023069.1 mouse_genomes_project 16 18396938 18408427 + MGP_C57BL6NJ_P0044228 Fam131a protein_coding protein_coding MGP_C57BL6NJ_T0044229.1 MGP_C57BL6NJ_G0023069.1 mouse_genomes_project 16 18397147 18407263 + MGP_C57BL6NJ_P0044229 Fam131a protein_coding protein_coding MGP_C57BL6NJ_T0044230.1 MGP_C57BL6NJ_G0023069.1 mouse_genomes_project 16 18398205 18407038 + MGP_C57BL6NJ_P0044230 Fam131a protein_coding protein_coding MGP_C57BL6NJ_T0043455.1 MGP_C57BL6NJ_G0022893.1 mouse_genomes_project 16 1548162 1571684 - MGP_C57BL6NJ_P0043455 Anks3 protein_coding protein_coding MGP_C57BL6NJ_T0100028.1 MGP_C57BL6NJ_G0038074.1 mouse_genomes_project 16 29362184 29362291 + Gm26295 snRNA snRNA MGP_C57BL6NJ_T0101334.1 MGP_C57BL6NJ_G0039380.1 mouse_genomes_project 16 43542140 43542269 - Gm26074 snoRNA snoRNA MGP_C57BL6NJ_T0003847.1 MGP_C57BL6NJ_G0003466.1 mouse_genomes_project 16 96701100 96708309 + Gm26626 antisense antisense MGP_C57BL6NJ_T0044693.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35080629 35108003 + Kpna1 protein_coding retained_intron MGP_C57BL6NJ_T0044694.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35086116 35142610 + MGP_C57BL6NJ_P0044694 Kpna1 protein_coding protein_coding MGP_C57BL6NJ_T0044695.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35086126 35109783 + Kpna1 protein_coding retained_intron MGP_C57BL6NJ_T0044696.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35086155 35123553 + MGP_C57BL6NJ_P0044696 Kpna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044697.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35086383 35117186 + MGP_C57BL6NJ_P0044697 Kpna1 protein_coding protein_coding MGP_C57BL6NJ_T0044698.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35104142 35139387 + MGP_C57BL6NJ_P0044698 Kpna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044699.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35104208 35125909 + MGP_C57BL6NJ_P0044699 Kpna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044700.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35118069 35140610 + MGP_C57BL6NJ_P0044700 Kpna1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044701.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35123652 35139347 + MGP_C57BL6NJ_P0044701 Kpna1 protein_coding protein_coding MGP_C57BL6NJ_T0044702.1 MGP_C57BL6NJ_G0023191.1 mouse_genomes_project 16 35125907 35137253 + Kpna1 protein_coding retained_intron MGP_C57BL6NJ_T0043418.1 MGP_C57BL6NJ_G0022884.1 mouse_genomes_project 16 1221708 1232583 + MGP_C57BL6NJ_P0043418 Vasn protein_coding protein_coding MGP_C57BL6NJ_T0043419.1 MGP_C57BL6NJ_G0022884.1 mouse_genomes_project 16 1221735 1229340 + Vasn protein_coding processed_transcript MGP_C57BL6NJ_T0043454.1 MGP_C57BL6NJ_G0022892.1 mouse_genomes_project 16 1545858 1547768 + MGP_C57BL6NJ_P0043454 Nudt16l1 protein_coding protein_coding MGP_C57BL6NJ_T0045550.1 MGP_C57BL6NJ_G0023462.1 mouse_genomes_project 16 95639414 95668166 - MGP_C57BL6NJ_P0045550 Gart protein_coding protein_coding MGP_C57BL6NJ_T0045551.1 MGP_C57BL6NJ_G0023462.1 mouse_genomes_project 16 95639621 95663114 - MGP_C57BL6NJ_P0045551 Gart protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045552.1 MGP_C57BL6NJ_G0023462.1 mouse_genomes_project 16 95651615 95668149 - MGP_C57BL6NJ_P0045552 Gart protein_coding protein_coding MGP_C57BL6NJ_T0098834.1 MGP_C57BL6NJ_G0036898.1 mouse_genomes_project 16 60034770 60035696 - pseudogene pseudogene MGP_C57BL6NJ_T0100035.1 MGP_C57BL6NJ_G0038081.1 mouse_genomes_project 16 35492991 35493095 - Gm25254 snRNA snRNA MGP_C57BL6NJ_T0101335.1 MGP_C57BL6NJ_G0039381.1 mouse_genomes_project 16 43595476 43595609 - Gm25989 snoRNA snoRNA MGP_C57BL6NJ_T0013456.1 MGP_C57BL6NJ_G0011501.1 mouse_genomes_project 16 16740156 16745453 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045540.1 MGP_C57BL6NJ_G0023459.1 mouse_genomes_project 16 95558059 95578329 + MGP_C57BL6NJ_P0045540 Ifngr2 protein_coding protein_coding MGP_C57BL6NJ_T0045541.1 MGP_C57BL6NJ_G0023459.1 mouse_genomes_project 16 95558134 95573810 + MGP_C57BL6NJ_P0045541 Ifngr2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045542.1 MGP_C57BL6NJ_G0023459.1 mouse_genomes_project 16 95574483 95578329 + Ifngr2 protein_coding processed_transcript MGP_C57BL6NJ_T0045239.1 MGP_C57BL6NJ_G0023343.1 mouse_genomes_project 16 60195183 60213207 - MGP_C57BL6NJ_P0045239 Olfr204 protein_coding protein_coding MGP_C57BL6NJ_T0044272.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19950355 20065127 - Igf2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0044273.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19950376 19984088 - Igf2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0044274.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19952095 20065071 - MGP_C57BL6NJ_P0044274 Igf2bp2 protein_coding protein_coding MGP_C57BL6NJ_T0044275.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19952668 19955000 - Igf2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0044276.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19969764 19972865 - Igf2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0044277.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 19978935 20037251 - Igf2bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0044278.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 20051589 20065100 - Igf2bp2 protein_coding processed_transcript MGP_C57BL6NJ_T0044279.1 MGP_C57BL6NJ_G0023083.1 mouse_genomes_project 16 20062988 20065083 - Igf2bp2 protein_coding retained_intron MGP_C57BL6NJ_T0007052.1 MGP_C57BL6NJ_G0005808.1 mouse_genomes_project 16 100249387 100315960 - 1600002D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007053.1 MGP_C57BL6NJ_G0005808.1 mouse_genomes_project 16 100260150 100342847 - 1600002D24Rik lincRNA lincRNA MGP_C57BL6NJ_T0101348.1 MGP_C57BL6NJ_G0039394.1 mouse_genomes_project 16 73784343 73784474 + Gm22797 snoRNA snoRNA MGP_C57BL6NJ_T0045628.1 MGP_C57BL6NJ_G0023473.1 mouse_genomes_project 16 96416482 96430898 - MGP_C57BL6NJ_P0045628 Kcne1 protein_coding protein_coding MGP_C57BL6NJ_T0045629.1 MGP_C57BL6NJ_G0023473.1 mouse_genomes_project 16 96419912 96430304 - MGP_C57BL6NJ_P0045629 Kcne1 protein_coding protein_coding MGP_C57BL6NJ_T0044832.1 MGP_C57BL6NJ_G0023228.1 mouse_genomes_project 16 37816012 37823303 - MGP_C57BL6NJ_P0044832 Adprh protein_coding protein_coding MGP_C57BL6NJ_T0007012.1 MGP_C57BL6NJ_G0005780.1 mouse_genomes_project 16 28686961 28693369 + 1700025H01Rik lincRNA lincRNA MGP_C57BL6NJ_T0045426.1 MGP_C57BL6NJ_G0023411.1 mouse_genomes_project 16 92479008 92479641 + MGP_C57BL6NJ_P0045426 Gm5965 protein_coding protein_coding MGP_C57BL6NJ_T0044108.1 MGP_C57BL6NJ_G0023049.1 mouse_genomes_project 16 17271373 17319481 - MGP_C57BL6NJ_P0044108 Lamp3 protein_coding protein_coding MGP_C57BL6NJ_T0101345.1 MGP_C57BL6NJ_G0039391.1 mouse_genomes_project 16 62171457 62171534 + Gm23852 snoRNA snoRNA MGP_C57BL6NJ_T0013475.1 MGP_C57BL6NJ_G0011520.1 mouse_genomes_project 16 35363600 35365033 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100063.1 MGP_C57BL6NJ_G0038109.1 mouse_genomes_project 16 96088989 96089087 + Gm23210 snRNA snRNA MGP_C57BL6NJ_T0007008.1 MGP_C57BL6NJ_G0005776.1 mouse_genomes_project 16 23253454 23262857 + A230028O05Rik lincRNA lincRNA MGP_C57BL6NJ_T0043588.1 MGP_C57BL6NJ_G0022933.1 mouse_genomes_project 16 7958964 7994495 - MGP_C57BL6NJ_P0043588 Litaf protein_coding protein_coding MGP_C57BL6NJ_T0043589.1 MGP_C57BL6NJ_G0022933.1 mouse_genomes_project 16 7960513 7975242 - MGP_C57BL6NJ_P0043589 Litaf protein_coding protein_coding MGP_C57BL6NJ_T0043590.1 MGP_C57BL6NJ_G0022933.1 mouse_genomes_project 16 7963032 8075584 - MGP_C57BL6NJ_P0043590 Litaf protein_coding protein_coding MGP_C57BL6NJ_T0043591.1 MGP_C57BL6NJ_G0022933.1 mouse_genomes_project 16 7966020 7994445 - Litaf protein_coding retained_intron MGP_C57BL6NJ_T0003832.1 MGP_C57BL6NJ_G0003455.1 mouse_genomes_project 16 40978951 41001725 - Gm28750 antisense antisense MGP_C57BL6NJ_T0100021.1 MGP_C57BL6NJ_G0038067.1 mouse_genomes_project 16 18452350 18452515 + Gm22741 snRNA snRNA MGP_C57BL6NJ_T0045017.1 MGP_C57BL6NJ_G0023267.1 mouse_genomes_project 16 45412708 45424373 + MGP_C57BL6NJ_P0045017 Gcsam protein_coding protein_coding MGP_C57BL6NJ_T0045018.1 MGP_C57BL6NJ_G0023267.1 mouse_genomes_project 16 45412751 45426001 + MGP_C57BL6NJ_P0045018 Gcsam protein_coding protein_coding MGP_C57BL6NJ_T0102188.1 MGP_C57BL6NJ_G0040203.1 mouse_genomes_project 16 48055157 48056652 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0044457.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30020218 30064081 + MGP_C57BL6NJ_P0044457 Bdh1 protein_coding protein_coding MGP_C57BL6NJ_T0044458.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30031250 30065485 + MGP_C57BL6NJ_P0044458 Bdh1 protein_coding protein_coding MGP_C57BL6NJ_T0044459.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30031254 30044019 + Bdh1 protein_coding retained_intron MGP_C57BL6NJ_T0044460.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30031801 30063806 + MGP_C57BL6NJ_P0044460 Bdh1 protein_coding protein_coding MGP_C57BL6NJ_T0044461.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30040057 30063334 + MGP_C57BL6NJ_P0044461 Bdh1 protein_coding protein_coding MGP_C57BL6NJ_T0044462.1 MGP_C57BL6NJ_G0023136.1 mouse_genomes_project 16 30064699 30065485 + Bdh1 protein_coding processed_transcript MGP_C57BL6NJ_T0044404.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000579 28082670 + MGP_C57BL6NJ_P0044404 Opa1 protein_coding protein_coding MGP_C57BL6NJ_T0044405.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000623 28035259 + Opa1 protein_coding retained_intron MGP_C57BL6NJ_T0044406.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000625 28079669 + MGP_C57BL6NJ_P0044406 Opa1 protein_coding protein_coding MGP_C57BL6NJ_T0044407.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000625 28051986 + MGP_C57BL6NJ_P0044407 Opa1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044408.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000625 28076981 + MGP_C57BL6NJ_P0044408 Opa1 protein_coding protein_coding MGP_C57BL6NJ_T0044409.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28000637 28079672 + Opa1 protein_coding retained_intron MGP_C57BL6NJ_T0044410.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28006600 28031541 + MGP_C57BL6NJ_P0044410 Opa1 protein_coding protein_coding MGP_C57BL6NJ_T0044411.1 MGP_C57BL6NJ_G0023122.1 mouse_genomes_project 16 28037259 28040439 + Opa1 protein_coding retained_intron MGP_C57BL6NJ_T0045056.1 MGP_C57BL6NJ_G0023277.1 mouse_genomes_project 16 48297251 48310394 + MGP_C57BL6NJ_P0045056 Dppa4 protein_coding protein_coding MGP_C57BL6NJ_T0045057.1 MGP_C57BL6NJ_G0023277.1 mouse_genomes_project 16 48297251 48310394 + MGP_C57BL6NJ_P0045057 Dppa4 protein_coding protein_coding MGP_C57BL6NJ_T0100062.1 MGP_C57BL6NJ_G0038108.1 mouse_genomes_project 16 95338941 95339024 - Gm24695 snRNA snRNA MGP_C57BL6NJ_T0044106.1 MGP_C57BL6NJ_G0023048.1 mouse_genomes_project 16 17234902 17248692 - MGP_C57BL6NJ_P0044106 protein_coding protein_coding MGP_C57BL6NJ_T0044107.1 MGP_C57BL6NJ_G0023048.1 mouse_genomes_project 16 17234902 17253626 - MGP_C57BL6NJ_P0044107 protein_coding protein_coding MGP_C57BL6NJ_T0045673.1 MGP_C57BL6NJ_G0023485.1 mouse_genomes_project 16 98381442 98544540 - MGP_C57BL6NJ_P0045673 Hlcs protein_coding protein_coding MGP_C57BL6NJ_T0044063.1 MGP_C57BL6NJ_G0023029.1 mouse_genomes_project 16 16106593 16111850 - MGP_C57BL6NJ_P0044063 Tbx1 protein_coding protein_coding MGP_C57BL6NJ_T0045115.1 MGP_C57BL6NJ_G0023298.1 mouse_genomes_project 16 56601458 56608934 + MGP_C57BL6NJ_P0045115 Rpl24 protein_coding protein_coding MGP_C57BL6NJ_T0045116.1 MGP_C57BL6NJ_G0023298.1 mouse_genomes_project 16 56601604 56608934 + Rpl24 protein_coding processed_transcript MGP_C57BL6NJ_T0045117.1 MGP_C57BL6NJ_G0023298.1 mouse_genomes_project 16 56601730 56606495 + Rpl24 protein_coding retained_intron MGP_C57BL6NJ_T0045079.1 MGP_C57BL6NJ_G0023287.1 mouse_genomes_project 16 49408357 49410301 - MGP_C57BL6NJ_P0045079 Gm5407 protein_coding protein_coding MGP_C57BL6NJ_T0045522.1 MGP_C57BL6NJ_G0023453.1 mouse_genomes_project 16 95210284 95213412 + MGP_C57BL6NJ_P0045522 Olig2 protein_coding protein_coding MGP_C57BL6NJ_T0006994.1 MGP_C57BL6NJ_G0005765.1 mouse_genomes_project 16 8227123 8249475 + 2610020C07Rik lincRNA lincRNA MGP_C57BL6NJ_T0045415.1 MGP_C57BL6NJ_G0023400.1 mouse_genomes_project 16 92179222 92180394 - MGP_C57BL6NJ_P0045415 Cldn17 protein_coding protein_coding MGP_C57BL6NJ_T0003808.1 MGP_C57BL6NJ_G0003436.1 mouse_genomes_project 16 14480220 14481029 + Gm15646 antisense antisense MGP_C57BL6NJ_T0101326.1 MGP_C57BL6NJ_G0039372.1 mouse_genomes_project 16 30383084 30383227 - Gm24879 snoRNA snoRNA MGP_C57BL6NJ_T0003842.1 MGP_C57BL6NJ_G0003462.1 mouse_genomes_project 16 68444286 68454499 + 4933411O13Rik antisense antisense MGP_C57BL6NJ_T0003843.1 MGP_C57BL6NJ_G0003462.1 mouse_genomes_project 16 68444292 68465266 + 4933411O13Rik antisense antisense MGP_C57BL6NJ_T0013444.1 MGP_C57BL6NJ_G0011489.1 mouse_genomes_project 16 12479816 12480286 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044463.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295078 30518557 + MGP_C57BL6NJ_P0044463 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044464.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295544 30517147 + MGP_C57BL6NJ_P0044464 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044465.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295570 30518563 + MGP_C57BL6NJ_P0044465 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044466.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295590 30518556 + MGP_C57BL6NJ_P0044466 Dlg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044467.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295674 30518553 + MGP_C57BL6NJ_P0044467 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044468.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30295785 30517985 + MGP_C57BL6NJ_P0044468 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044469.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30316883 30413058 + Dlg1 protein_coding retained_intron MGP_C57BL6NJ_T0044470.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30391202 30517562 + MGP_C57BL6NJ_P0044470 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044471.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30432365 30485835 + MGP_C57BL6NJ_P0044471 Dlg1 protein_coding protein_coding MGP_C57BL6NJ_T0044472.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30472305 30479508 + Dlg1 protein_coding retained_intron MGP_C57BL6NJ_T0044473.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30479286 30502014 + MGP_C57BL6NJ_P0044473 Dlg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044474.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30490339 30501969 + Dlg1 protein_coding retained_intron MGP_C57BL6NJ_T0044475.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30496298 30508528 + Dlg1 protein_coding retained_intron MGP_C57BL6NJ_T0044476.1 MGP_C57BL6NJ_G0023137.1 mouse_genomes_project 16 30512781 30517149 + Dlg1 protein_coding retained_intron MGP_C57BL6NJ_T0006995.1 MGP_C57BL6NJ_G0005766.1 mouse_genomes_project 16 9925899 9966598 + 1700003L19Rik lincRNA lincRNA MGP_C57BL6NJ_T0045450.1 MGP_C57BL6NJ_G0023431.1 mouse_genomes_project 16 92892845 92893221 + MGP_C57BL6NJ_P0045450 Gm9789 protein_coding protein_coding MGP_C57BL6NJ_T0044502.1 MGP_C57BL6NJ_G0023145.1 mouse_genomes_project 16 30779146 30787278 + MGP_C57BL6NJ_P0044502 Cep19 protein_coding protein_coding MGP_C57BL6NJ_T0044503.1 MGP_C57BL6NJ_G0023145.1 mouse_genomes_project 16 30779298 30787260 + MGP_C57BL6NJ_P0044503 Cep19 protein_coding protein_coding MGP_C57BL6NJ_T0044504.1 MGP_C57BL6NJ_G0023145.1 mouse_genomes_project 16 30783086 30787264 + MGP_C57BL6NJ_P0044504 Cep19 protein_coding protein_coding MGP_C57BL6NJ_T0100036.1 MGP_C57BL6NJ_G0038082.1 mouse_genomes_project 16 35586719 35586824 + Gm24218 snRNA snRNA MGP_C57BL6NJ_T0044269.1 MGP_C57BL6NJ_G0023081.1 mouse_genomes_project 16 19811853 19877393 - MGP_C57BL6NJ_P0044269 Liph protein_coding protein_coding MGP_C57BL6NJ_T0044270.1 MGP_C57BL6NJ_G0023081.1 mouse_genomes_project 16 19811853 19877393 - MGP_C57BL6NJ_P0044270 Liph protein_coding protein_coding MGP_C57BL6NJ_T0100046.1 MGP_C57BL6NJ_G0038092.1 mouse_genomes_project 16 51144971 51145078 - Gm24925 snRNA snRNA MGP_C57BL6NJ_T0007013.1 MGP_C57BL6NJ_G0005781.1 mouse_genomes_project 16 28693979 28698949 - Gm26562 lincRNA lincRNA MGP_C57BL6NJ_T0044809.1 MGP_C57BL6NJ_G0023219.1 mouse_genomes_project 16 37205913 37227733 + MGP_C57BL6NJ_P0044809 Lrrc58 protein_coding protein_coding MGP_C57BL6NJ_T0001101.1 MGP_C57BL6NJ_G0001008.1 mouse_genomes_project 16 80152352 80154676 + TEC TEC MGP_C57BL6NJ_T0043827.1 MGP_C57BL6NJ_G0022985.1 mouse_genomes_project 16 14470033 14472278 - MGP_C57BL6NJ_P0043827 Sdf2l1 protein_coding protein_coding MGP_C57BL6NJ_T0044767.1 MGP_C57BL6NJ_G0023210.1 mouse_genomes_project 16 36228930 36254306 - MGP_C57BL6NJ_P0044767 Fbxo40 protein_coding protein_coding MGP_C57BL6NJ_T0044768.1 MGP_C57BL6NJ_G0023210.1 mouse_genomes_project 16 36231401 36241513 - Fbxo40 protein_coding processed_transcript MGP_C57BL6NJ_T0044769.1 MGP_C57BL6NJ_G0023210.1 mouse_genomes_project 16 36231510 36237033 - Fbxo40 protein_coding retained_intron MGP_C57BL6NJ_T0044770.1 MGP_C57BL6NJ_G0023210.1 mouse_genomes_project 16 36231543 36241873 - MGP_C57BL6NJ_P0044770 Fbxo40 protein_coding protein_coding MGP_C57BL6NJ_T0045280.1 MGP_C57BL6NJ_G0023360.1 mouse_genomes_project 16 66293565 66301878 + MGP_C57BL6NJ_P0045280 Cggbp1 protein_coding protein_coding MGP_C57BL6NJ_T0045281.1 MGP_C57BL6NJ_G0023360.1 mouse_genomes_project 16 66295072 66298357 + Cggbp1 protein_coding retained_intron MGP_C57BL6NJ_T0045323.1 MGP_C57BL6NJ_G0023373.1 mouse_genomes_project 16 78340451 78393131 - MGP_C57BL6NJ_P0045323 Samsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045324.1 MGP_C57BL6NJ_G0023373.1 mouse_genomes_project 16 78340452 78536413 - MGP_C57BL6NJ_P0045324 Samsn1 protein_coding protein_coding MGP_C57BL6NJ_T0045325.1 MGP_C57BL6NJ_G0023373.1 mouse_genomes_project 16 78363932 78393061 - Samsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045326.1 MGP_C57BL6NJ_G0023373.1 mouse_genomes_project 16 78365024 78393131 - Samsn1 protein_coding retained_intron MGP_C57BL6NJ_T0045327.1 MGP_C57BL6NJ_G0023373.1 mouse_genomes_project 16 78370718 78393100 - Samsn1 protein_coding retained_intron MGP_C57BL6NJ_T0000020.1 MGP_C57BL6NJ_G0000013.1 mouse_genomes_project 16 16776269 16776583 - MGP_C57BL6NJ_P0000020 Iglc4 IG_C_gene IG_C_gene MGP_C57BL6NJ_T0044841.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37938102 37973092 + MGP_C57BL6NJ_P0044841 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044842.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37942231 37974064 + MGP_C57BL6NJ_P0044842 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044843.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37942231 37974064 + MGP_C57BL6NJ_P0044843 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044844.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37942280 37968159 + MGP_C57BL6NJ_P0044844 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044845.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37942305 37955092 + Tmem39a protein_coding processed_transcript MGP_C57BL6NJ_T0044846.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37943608 37963902 + MGP_C57BL6NJ_P0044846 Tmem39a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044847.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37957343 37967327 + Tmem39a protein_coding retained_intron MGP_C57BL6NJ_T0044848.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37957666 37973344 + MGP_C57BL6NJ_P0044848 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044849.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37964010 37972844 + MGP_C57BL6NJ_P0044849 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044850.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37967317 37968792 + Tmem39a protein_coding retained_intron MGP_C57BL6NJ_T0044851.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37967394 37968541 + Tmem39a protein_coding retained_intron MGP_C57BL6NJ_T0044852.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37967409 37973047 + MGP_C57BL6NJ_P0044852 Tmem39a protein_coding protein_coding MGP_C57BL6NJ_T0044853.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37969112 37973248 + Tmem39a protein_coding processed_transcript MGP_C57BL6NJ_T0044854.1 MGP_C57BL6NJ_G0023232.1 mouse_genomes_project 16 37969940 37973208 + Tmem39a protein_coding retained_intron MGP_C57BL6NJ_T0043535.1 MGP_C57BL6NJ_G0022915.1 mouse_genomes_project 16 5688140 5719984 + MGP_C57BL6NJ_P0043535 1810013L24Rik protein_coding protein_coding MGP_C57BL6NJ_T0045451.1 MGP_C57BL6NJ_G0023432.1 mouse_genomes_project 16 92902576 92902735 + MGP_C57BL6NJ_P0045451 Gm7735 protein_coding protein_coding MGP_C57BL6NJ_T0044663.1 MGP_C57BL6NJ_G0023181.1 mouse_genomes_project 16 34029192 34119290 + MGP_C57BL6NJ_P0044663 Hacd2 protein_coding protein_coding MGP_C57BL6NJ_T0044035.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15933958 15990708 + MGP_C57BL6NJ_P0044035 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044036.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15933991 15990711 + MGP_C57BL6NJ_P0044036 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044037.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15933991 15990714 + MGP_C57BL6NJ_P0044037 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044038.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934012 15968109 + MGP_C57BL6NJ_P0044038 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044039.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934012 15990708 + MGP_C57BL6NJ_P0044039 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044040.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934012 15990708 + MGP_C57BL6NJ_P0044040 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044041.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934015 15990712 + MGP_C57BL6NJ_P0044041 Txnrd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044042.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934019 15990711 + MGP_C57BL6NJ_P0044042 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044043.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15934036 15948296 + MGP_C57BL6NJ_P0044043 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044044.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15936271 15948294 + MGP_C57BL6NJ_P0044044 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044045.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15936499 15954847 + MGP_C57BL6NJ_P0044045 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044046.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15952441 15954090 + MGP_C57BL6NJ_P0044046 Txnrd2 protein_coding protein_coding MGP_C57BL6NJ_T0044047.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15963679 15986330 + Txnrd2 protein_coding processed_transcript MGP_C57BL6NJ_T0044048.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15963685 15986376 + Txnrd2 protein_coding processed_transcript MGP_C57BL6NJ_T0044049.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15983461 15986339 + Txnrd2 protein_coding processed_transcript MGP_C57BL6NJ_T0044050.1 MGP_C57BL6NJ_G0023026.1 mouse_genomes_project 16 15983491 15986328 + Txnrd2 protein_coding processed_transcript MGP_C57BL6NJ_T0043645.1 MGP_C57BL6NJ_G0022944.1 mouse_genomes_project 16 10220336 10263637 + MGP_C57BL6NJ_P0043645 Ercc4 protein_coding protein_coding MGP_C57BL6NJ_T0043646.1 MGP_C57BL6NJ_G0022944.1 mouse_genomes_project 16 10220569 10237384 + Ercc4 protein_coding retained_intron MGP_C57BL6NJ_T0043647.1 MGP_C57BL6NJ_G0022944.1 mouse_genomes_project 16 10220587 10241165 + MGP_C57BL6NJ_P0043647 Ercc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043648.1 MGP_C57BL6NJ_G0022944.1 mouse_genomes_project 16 10224133 10265520 + MGP_C57BL6NJ_P0043648 Ercc4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043649.1 MGP_C57BL6NJ_G0022944.1 mouse_genomes_project 16 10250931 10258241 + Ercc4 protein_coding processed_transcript MGP_C57BL6NJ_T0043902.1 MGP_C57BL6NJ_G0023000.1 mouse_genomes_project 16 14956842 14966969 + MGP_C57BL6NJ_P0043902 P2rx6 protein_coding protein_coding MGP_C57BL6NJ_T0043903.1 MGP_C57BL6NJ_G0023000.1 mouse_genomes_project 16 14956842 14966058 + MGP_C57BL6NJ_P0043903 P2rx6 protein_coding protein_coding MGP_C57BL6NJ_T0043904.1 MGP_C57BL6NJ_G0023000.1 mouse_genomes_project 16 14956890 14972758 + MGP_C57BL6NJ_P0043904 P2rx6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045455.1 MGP_C57BL6NJ_G0023436.1 mouse_genomes_project 16 93210119 93210881 - MGP_C57BL6NJ_P0045455 Krtap6-2 protein_coding protein_coding MGP_C57BL6NJ_T0045097.1 MGP_C57BL6NJ_G0023292.1 mouse_genomes_project 16 52330773 52518423 + MGP_C57BL6NJ_P0045097 Cblb protein_coding protein_coding MGP_C57BL6NJ_T0045098.1 MGP_C57BL6NJ_G0023292.1 mouse_genomes_project 16 52330885 52515068 + MGP_C57BL6NJ_P0045098 Cblb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003820.1 MGP_C57BL6NJ_G0003447.1 mouse_genomes_project 16 32717052 32728816 - Gm15657 antisense antisense MGP_C57BL6NJ_T0003821.1 MGP_C57BL6NJ_G0003447.1 mouse_genomes_project 16 32727109 32728814 - Gm15657 antisense antisense MGP_C57BL6NJ_T0003822.1 MGP_C57BL6NJ_G0003447.1 mouse_genomes_project 16 32727440 32729592 - Gm15657 antisense antisense MGP_C57BL6NJ_T0044679.1 MGP_C57BL6NJ_G0023186.1 mouse_genomes_project 16 34758246 34841782 - MGP_C57BL6NJ_P0044679 Dirc2 protein_coding protein_coding MGP_C57BL6NJ_T0044680.1 MGP_C57BL6NJ_G0023186.1 mouse_genomes_project 16 34761732 34841756 - MGP_C57BL6NJ_P0044680 Dirc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044066.1 MGP_C57BL6NJ_G0023031.1 mouse_genomes_project 16 16152441 16160563 - MGP_C57BL6NJ_P0044066 Sept5 protein_coding protein_coding MGP_C57BL6NJ_T0013485.1 MGP_C57BL6NJ_G0011530.1 mouse_genomes_project 16 44975212 44975614 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013428.1 MGP_C57BL6NJ_G0011473.1 mouse_genomes_project 16 220606 221122 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045440.1 MGP_C57BL6NJ_G0023423.1 mouse_genomes_project 16 92730317 92730993 + MGP_C57BL6NJ_P0045440 Gm10229 protein_coding protein_coding MGP_C57BL6NJ_T0044412.1 MGP_C57BL6NJ_G0023123.1 mouse_genomes_project 16 28415937 28419752 - MGP_C57BL6NJ_P0044412 Gm1968 protein_coding protein_coding MGP_C57BL6NJ_T0010328.1 MGP_C57BL6NJ_G0008413.1 mouse_genomes_project 16 10603901 10604002 - Mir6365 miRNA miRNA MGP_C57BL6NJ_T0045546.1 MGP_C57BL6NJ_G0023461.1 mouse_genomes_project 16 95632485 95637228 - MGP_C57BL6NJ_P0045546 Dnajc28 protein_coding protein_coding MGP_C57BL6NJ_T0045547.1 MGP_C57BL6NJ_G0023461.1 mouse_genomes_project 16 95633954 95637223 - MGP_C57BL6NJ_P0045547 Dnajc28 protein_coding protein_coding MGP_C57BL6NJ_T0045548.1 MGP_C57BL6NJ_G0023461.1 mouse_genomes_project 16 95635065 95637220 - MGP_C57BL6NJ_P0045548 Dnajc28 protein_coding protein_coding MGP_C57BL6NJ_T0045549.1 MGP_C57BL6NJ_G0023461.1 mouse_genomes_project 16 95635330 95637255 - MGP_C57BL6NJ_P0045549 Dnajc28 protein_coding protein_coding MGP_C57BL6NJ_T0044816.1 MGP_C57BL6NJ_G0023223.1 mouse_genomes_project 16 37653106 37706508 - MGP_C57BL6NJ_P0044816 Maats1 protein_coding protein_coding MGP_C57BL6NJ_T0044817.1 MGP_C57BL6NJ_G0023223.1 mouse_genomes_project 16 37683144 37706475 - MGP_C57BL6NJ_P0044817 Maats1 protein_coding protein_coding MGP_C57BL6NJ_T0044818.1 MGP_C57BL6NJ_G0023223.1 mouse_genomes_project 16 37693115 37706806 - Maats1 protein_coding processed_transcript MGP_C57BL6NJ_T0044267.1 MGP_C57BL6NJ_G0023079.1 mouse_genomes_project 16 19749485 19794690 + MGP_C57BL6NJ_P0044267 Map3k13 protein_coding protein_coding MGP_C57BL6NJ_T0044434.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29088673 29116807 - MGP_C57BL6NJ_P0044434 Lsg1 protein_coding protein_coding MGP_C57BL6NJ_T0044435.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29089550 29116804 - MGP_C57BL6NJ_P0044435 Lsg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044436.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29092857 29116778 - Lsg1 protein_coding retained_intron MGP_C57BL6NJ_T0044437.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29093209 29096277 - Lsg1 protein_coding retained_intron MGP_C57BL6NJ_T0044438.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29096180 29116807 - Lsg1 protein_coding retained_intron MGP_C57BL6NJ_T0044439.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29100595 29114865 - MGP_C57BL6NJ_P0044439 Lsg1 protein_coding protein_coding MGP_C57BL6NJ_T0044440.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29102534 29116789 - Lsg1 protein_coding retained_intron MGP_C57BL6NJ_T0044441.1 MGP_C57BL6NJ_G0023130.1 mouse_genomes_project 16 29111471 29116754 - Lsg1 protein_coding retained_intron MGP_C57BL6NJ_T0043698.1 MGP_C57BL6NJ_G0022955.1 mouse_genomes_project 16 11158229 11293247 + MGP_C57BL6NJ_P0043698 2900011O08Rik protein_coding protein_coding MGP_C57BL6NJ_T0043319.1 MGP_C57BL6NJ_G0022863.1 mouse_genomes_project 16 198068 208917 - MGP_C57BL6NJ_P0043319 Mefv protein_coding protein_coding MGP_C57BL6NJ_T0043320.1 MGP_C57BL6NJ_G0022863.1 mouse_genomes_project 16 198068 208917 - MGP_C57BL6NJ_P0043320 Mefv protein_coding protein_coding MGP_C57BL6NJ_T0007005.1 MGP_C57BL6NJ_G0005773.1 mouse_genomes_project 16 19694780 19697106 - Gm26744 lincRNA lincRNA MGP_C57BL6NJ_T0100050.1 MGP_C57BL6NJ_G0038096.1 mouse_genomes_project 16 63796794 63796898 + Gm24164 snRNA snRNA MGP_C57BL6NJ_T0044920.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43803776 43860500 - MGP_C57BL6NJ_P0044920 Atp6v1a protein_coding protein_coding MGP_C57BL6NJ_T0044921.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43804019 43860391 - MGP_C57BL6NJ_P0044921 Atp6v1a protein_coding protein_coding MGP_C57BL6NJ_T0044922.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43815555 43860175 - Atp6v1a protein_coding retained_intron MGP_C57BL6NJ_T0044923.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43828864 43860825 - MGP_C57BL6NJ_P0044923 Atp6v1a protein_coding protein_coding MGP_C57BL6NJ_T0044924.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43828987 43860213 - MGP_C57BL6NJ_P0044924 Atp6v1a protein_coding protein_coding MGP_C57BL6NJ_T0044925.1 MGP_C57BL6NJ_G0023247.1 mouse_genomes_project 16 43831057 43860900 - MGP_C57BL6NJ_P0044925 Atp6v1a protein_coding protein_coding MGP_C57BL6NJ_T0044617.1 MGP_C57BL6NJ_G0023171.1 mouse_genomes_project 16 32275600 32410151 + MGP_C57BL6NJ_P0044617 Zfp148 protein_coding protein_coding MGP_C57BL6NJ_T0044618.1 MGP_C57BL6NJ_G0023171.1 mouse_genomes_project 16 32298770 32404196 + MGP_C57BL6NJ_P0044618 Zfp148 protein_coding protein_coding MGP_C57BL6NJ_T0013467.1 MGP_C57BL6NJ_G0011512.1 mouse_genomes_project 16 27689035 27689429 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044631.1 MGP_C57BL6NJ_G0023175.1 mouse_genomes_project 16 32771599 32901738 + MGP_C57BL6NJ_P0044631 Itgb5 protein_coding protein_coding MGP_C57BL6NJ_T0044632.1 MGP_C57BL6NJ_G0023175.1 mouse_genomes_project 16 32771611 32901745 + MGP_C57BL6NJ_P0044632 Itgb5 protein_coding protein_coding MGP_C57BL6NJ_T0044633.1 MGP_C57BL6NJ_G0023175.1 mouse_genomes_project 16 32832670 32862135 + Itgb5 protein_coding processed_transcript MGP_C57BL6NJ_T0044634.1 MGP_C57BL6NJ_G0023175.1 mouse_genomes_project 16 32839560 32849945 + Itgb5 protein_coding processed_transcript MGP_C57BL6NJ_T0044635.1 MGP_C57BL6NJ_G0023175.1 mouse_genomes_project 16 32875268 32896740 + Itgb5 protein_coding processed_transcript MGP_C57BL6NJ_T0045165.1 MGP_C57BL6NJ_G0023311.1 mouse_genomes_project 16 57883345 57945636 - MGP_C57BL6NJ_P0045165 Tbc1d23 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045166.1 MGP_C57BL6NJ_G0023311.1 mouse_genomes_project 16 57883350 57945736 - MGP_C57BL6NJ_P0045166 Tbc1d23 protein_coding protein_coding MGP_C57BL6NJ_T0045723.1 MGP_C57BL6NJ_G0023491.1 mouse_genomes_project 16 99074324 99343573 - MGP_C57BL6NJ_P0045723 Kcnj6 protein_coding protein_coding MGP_C57BL6NJ_T0045724.1 MGP_C57BL6NJ_G0023491.1 mouse_genomes_project 16 99087151 99343573 - MGP_C57BL6NJ_P0045724 Kcnj6 protein_coding protein_coding MGP_C57BL6NJ_T0045725.1 MGP_C57BL6NJ_G0023491.1 mouse_genomes_project 16 99159275 99195370 - MGP_C57BL6NJ_P0045725 Kcnj6 protein_coding protein_coding MGP_C57BL6NJ_T0007010.1 MGP_C57BL6NJ_G0005778.1 mouse_genomes_project 16 28355506 28402148 - Gm26569 lincRNA lincRNA MGP_C57BL6NJ_T0099026.1 MGP_C57BL6NJ_G0037090.1 mouse_genomes_project 16 5736341 5736434 - Gm22224 rRNA rRNA MGP_C57BL6NJ_T0044248.1 MGP_C57BL6NJ_G0023075.1 mouse_genomes_project 16 18990620 19009170 + MGP_C57BL6NJ_P0044248 Ephb3 protein_coding protein_coding MGP_C57BL6NJ_T0044249.1 MGP_C57BL6NJ_G0023075.1 mouse_genomes_project 16 18996960 19008833 + MGP_C57BL6NJ_P0044249 Ephb3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044250.1 MGP_C57BL6NJ_G0023075.1 mouse_genomes_project 16 19002682 19009171 + Ephb3 protein_coding retained_intron MGP_C57BL6NJ_T0044251.1 MGP_C57BL6NJ_G0023075.1 mouse_genomes_project 16 19007551 19008553 + Ephb3 protein_coding retained_intron MGP_C57BL6NJ_T0043968.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15357586 15360595 - MGP_C57BL6NJ_P0043968 Slc25a1 protein_coding protein_coding MGP_C57BL6NJ_T0043969.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15358057 15359719 - Slc25a1 protein_coding retained_intron MGP_C57BL6NJ_T0043970.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15358091 15359792 - MGP_C57BL6NJ_P0043970 Slc25a1 protein_coding protein_coding MGP_C57BL6NJ_T0043971.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15358641 15360263 - Slc25a1 protein_coding retained_intron MGP_C57BL6NJ_T0043972.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15359525 15360505 - Slc25a1 protein_coding retained_intron MGP_C57BL6NJ_T0043973.1 MGP_C57BL6NJ_G0023014.1 mouse_genomes_project 16 15359792 15360585 - Slc25a1 protein_coding retained_intron MGP_C57BL6NJ_T0045383.1 MGP_C57BL6NJ_G0023393.1 mouse_genomes_project 16 90948568 91015823 - MGP_C57BL6NJ_P0045383 Ltn1 protein_coding protein_coding MGP_C57BL6NJ_T0043832.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14485166 14491831 + MGP_C57BL6NJ_P0043832 Ydjc protein_coding protein_coding MGP_C57BL6NJ_T0043833.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14486388 14489392 + Ydjc protein_coding retained_intron MGP_C57BL6NJ_T0043834.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14487482 14503960 + MGP_C57BL6NJ_P0043834 Ydjc protein_coding protein_coding MGP_C57BL6NJ_T0043835.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14487494 14492247 + Ydjc protein_coding retained_intron MGP_C57BL6NJ_T0043836.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14487521 14489392 + Ydjc protein_coding retained_intron MGP_C57BL6NJ_T0043837.1 MGP_C57BL6NJ_G0022987.1 mouse_genomes_project 16 14487524 14489392 + MGP_C57BL6NJ_P0043837 Ydjc protein_coding protein_coding MGP_C57BL6NJ_T0045335.1 MGP_C57BL6NJ_G0023376.1 mouse_genomes_project 16 80206901 80221549 - MGP_C57BL6NJ_P0045335 Gm11146 protein_coding protein_coding MGP_C57BL6NJ_T0044088.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16460464 16511229 + MGP_C57BL6NJ_P0044088 Hira protein_coding protein_coding MGP_C57BL6NJ_T0044089.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16460493 16552917 + MGP_C57BL6NJ_P0044089 Hira protein_coding protein_coding MGP_C57BL6NJ_T0044090.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16460697 16494370 + Hira protein_coding retained_intron MGP_C57BL6NJ_T0044091.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16460697 16518210 + MGP_C57BL6NJ_P0044091 Hira protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044092.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16460839 16499789 + Hira protein_coding retained_intron MGP_C57BL6NJ_T0044093.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16506271 16508856 + Hira protein_coding processed_transcript MGP_C57BL6NJ_T0044094.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16508775 16518265 + Hira protein_coding retained_intron MGP_C57BL6NJ_T0044095.1 MGP_C57BL6NJ_G0023038.1 mouse_genomes_project 16 16516142 16530656 + Hira protein_coding processed_transcript MGP_C57BL6NJ_T0013497.1 MGP_C57BL6NJ_G0011542.1 mouse_genomes_project 16 61665134 61666070 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013490.1 MGP_C57BL6NJ_G0011535.1 mouse_genomes_project 16 48055386 48056655 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044117.1 MGP_C57BL6NJ_G0023052.1 mouse_genomes_project 16 17559689 17597957 - MGP_C57BL6NJ_P0044117 Klhl6 protein_coding protein_coding MGP_C57BL6NJ_T0044118.1 MGP_C57BL6NJ_G0023052.1 mouse_genomes_project 16 17571865 17581235 - Klhl6 protein_coding retained_intron MGP_C57BL6NJ_T0044119.1 MGP_C57BL6NJ_G0023052.1 mouse_genomes_project 16 17571885 17597927 - MGP_C57BL6NJ_P0044119 Klhl6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044120.1 MGP_C57BL6NJ_G0023052.1 mouse_genomes_project 16 17580959 17597850 - MGP_C57BL6NJ_P0044120 Klhl6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013435.1 MGP_C57BL6NJ_G0011480.1 mouse_genomes_project 16 6967757 6968523 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100039.1 MGP_C57BL6NJ_G0038085.1 mouse_genomes_project 16 37328646 37328786 + Gm25140 snRNA snRNA MGP_C57BL6NJ_T0044811.1 MGP_C57BL6NJ_G0023221.1 mouse_genomes_project 16 37445513 37602467 + MGP_C57BL6NJ_P0044811 Gsk3b protein_coding protein_coding MGP_C57BL6NJ_T0044812.1 MGP_C57BL6NJ_G0023221.1 mouse_genomes_project 16 37446800 37597172 + MGP_C57BL6NJ_P0044812 Gsk3b protein_coding protein_coding MGP_C57BL6NJ_T0044813.1 MGP_C57BL6NJ_G0023221.1 mouse_genomes_project 16 37499767 37547987 + Gsk3b protein_coding processed_transcript MGP_C57BL6NJ_T0044814.1 MGP_C57BL6NJ_G0023221.1 mouse_genomes_project 16 37500731 37565827 + Gsk3b protein_coding retained_intron MGP_C57BL6NJ_T0044366.1 MGP_C57BL6NJ_G0023111.1 mouse_genomes_project 16 24771557 24794476 - MGP_C57BL6NJ_P0044366 Tmem207 protein_coding protein_coding MGP_C57BL6NJ_T0044268.1 MGP_C57BL6NJ_G0023080.1 mouse_genomes_project 16 19797139 19804105 - MGP_C57BL6NJ_P0044268 Tmem41a protein_coding protein_coding MGP_C57BL6NJ_T0044081.1 MGP_C57BL6NJ_G0023035.1 mouse_genomes_project 16 16418393 16422003 + MGP_C57BL6NJ_P0044081 2510002D24Rik protein_coding protein_coding MGP_C57BL6NJ_T0044082.1 MGP_C57BL6NJ_G0023035.1 mouse_genomes_project 16 16418396 16419203 + MGP_C57BL6NJ_P0044082 2510002D24Rik protein_coding protein_coding MGP_C57BL6NJ_T0044083.1 MGP_C57BL6NJ_G0023035.1 mouse_genomes_project 16 16418396 16421888 + MGP_C57BL6NJ_P0044083 2510002D24Rik protein_coding protein_coding MGP_C57BL6NJ_T0044085.1 MGP_C57BL6NJ_G0023035.1 mouse_genomes_project 16 16418470 16421618 + 2510002D24Rik protein_coding retained_intron MGP_C57BL6NJ_T0044418.1 MGP_C57BL6NJ_G0023126.1 mouse_genomes_project 16 28765826 28781303 - MGP_C57BL6NJ_P0044418 Lrrc15 protein_coding protein_coding MGP_C57BL6NJ_T0044908.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43598693 43649632 + MGP_C57BL6NJ_P0044908 Ccdc191 protein_coding protein_coding MGP_C57BL6NJ_T0044909.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43598696 43675517 + MGP_C57BL6NJ_P0044909 Ccdc191 protein_coding protein_coding MGP_C57BL6NJ_T0044910.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43598734 43617178 + MGP_C57BL6NJ_P0044910 Ccdc191 protein_coding protein_coding MGP_C57BL6NJ_T0044911.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43598785 43674615 + MGP_C57BL6NJ_P0044911 Ccdc191 protein_coding protein_coding MGP_C57BL6NJ_T0044912.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43649067 43654868 + Ccdc191 protein_coding processed_transcript MGP_C57BL6NJ_T0044913.1 MGP_C57BL6NJ_G0023244.1 mouse_genomes_project 16 43649188 43675517 + MGP_C57BL6NJ_P0044913 Ccdc191 protein_coding protein_coding MGP_C57BL6NJ_T0044104.1 MGP_C57BL6NJ_G0023046.1 mouse_genomes_project 16 17234873 17248729 - MGP_C57BL6NJ_P0044104 protein_coding protein_coding MGP_C57BL6NJ_T0043977.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15515366 15550028 - MGP_C57BL6NJ_P0043977 Prodh protein_coding protein_coding MGP_C57BL6NJ_T0043983.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15532865 15550022 - MGP_C57BL6NJ_P0043983 Prodh protein_coding protein_coding MGP_C57BL6NJ_T0043984.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15533269 15540133 - MGP_C57BL6NJ_P0043984 Prodh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043985.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15533399 15540807 - MGP_C57BL6NJ_P0043985 Prodh protein_coding protein_coding MGP_C57BL6NJ_T0043986.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15541876 15543184 - Prodh protein_coding processed_transcript MGP_C57BL6NJ_T0043987.1 MGP_C57BL6NJ_G0023016.1 mouse_genomes_project 16 15545068 15549887 - MGP_C57BL6NJ_P0043987 Prodh protein_coding protein_coding MGP_C57BL6NJ_T0045779.1 MGP_C57BL6NJ_G0023499.1 mouse_genomes_project 16 100620472 100662844 - MGP_C57BL6NJ_P0045779 Lca5l protein_coding protein_coding MGP_C57BL6NJ_T0045780.1 MGP_C57BL6NJ_G0023499.1 mouse_genomes_project 16 100620971 100648776 - MGP_C57BL6NJ_P0045780 Lca5l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045781.1 MGP_C57BL6NJ_G0023499.1 mouse_genomes_project 16 100621133 100662851 - MGP_C57BL6NJ_P0045781 Lca5l protein_coding protein_coding MGP_C57BL6NJ_T0045782.1 MGP_C57BL6NJ_G0023499.1 mouse_genomes_project 16 100622564 100662844 - Lca5l protein_coding retained_intron MGP_C57BL6NJ_T0045783.1 MGP_C57BL6NJ_G0023499.1 mouse_genomes_project 16 100651121 100662851 - Lca5l protein_coding processed_transcript MGP_C57BL6NJ_T0100022.1 MGP_C57BL6NJ_G0038068.1 mouse_genomes_project 16 19618981 19619087 + Gm24898 snRNA snRNA MGP_C57BL6NJ_T0007051.1 MGP_C57BL6NJ_G0005807.1 mouse_genomes_project 16 100209009 100211298 - 2810404F17Rik lincRNA lincRNA MGP_C57BL6NJ_T0045099.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52566775 52776435 - MGP_C57BL6NJ_P0045099 Alcam protein_coding protein_coding MGP_C57BL6NJ_T0045100.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52568866 52612688 - MGP_C57BL6NJ_P0045100 Alcam protein_coding protein_coding MGP_C57BL6NJ_T0045101.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52569246 52774826 - MGP_C57BL6NJ_P0045101 Alcam protein_coding protein_coding MGP_C57BL6NJ_T0045102.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52570967 52591266 - Alcam protein_coding retained_intron MGP_C57BL6NJ_T0045103.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52571000 52593320 - Alcam protein_coding retained_intron MGP_C57BL6NJ_T0045104.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52590365 52774826 - MGP_C57BL6NJ_P0045104 Alcam protein_coding protein_coding MGP_C57BL6NJ_T0045105.1 MGP_C57BL6NJ_G0023293.1 mouse_genomes_project 16 52621021 52775015 - MGP_C57BL6NJ_P0045105 Alcam protein_coding protein_coding MGP_C57BL6NJ_T0045380.1 MGP_C57BL6NJ_G0023392.1 mouse_genomes_project 16 90922748 90940542 + MGP_C57BL6NJ_P0045380 N6amt1 protein_coding protein_coding MGP_C57BL6NJ_T0045381.1 MGP_C57BL6NJ_G0023392.1 mouse_genomes_project 16 90922771 90938641 + MGP_C57BL6NJ_P0045381 N6amt1 protein_coding protein_coding MGP_C57BL6NJ_T0045382.1 MGP_C57BL6NJ_G0023392.1 mouse_genomes_project 16 90922773 90940656 + MGP_C57BL6NJ_P0045382 N6amt1 protein_coding protein_coding MGP_C57BL6NJ_T0044102.1 MGP_C57BL6NJ_G0023044.1 mouse_genomes_project 16 17135780 17136719 - MGP_C57BL6NJ_P0044102 protein_coding protein_coding MGP_C57BL6NJ_T0043585.1 MGP_C57BL6NJ_G0022931.1 mouse_genomes_project 16 7792521 7792601 + MGP_C57BL6NJ_P0043585 Gm11172 protein_coding protein_coding MGP_C57BL6NJ_T0043592.1 MGP_C57BL6NJ_G0022934.1 mouse_genomes_project 16 8075724 8084445 + MGP_C57BL6NJ_P0043592 Snn protein_coding protein_coding MGP_C57BL6NJ_T0100051.1 MGP_C57BL6NJ_G0038097.1 mouse_genomes_project 16 65083937 65084035 - Gm22769 snRNA snRNA MGP_C57BL6NJ_T0045796.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100844506 100902209 + MGP_C57BL6NJ_P0045796 Igsf5 protein_coding protein_coding MGP_C57BL6NJ_T0045797.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100844632 100888636 + MGP_C57BL6NJ_P0045797 Igsf5 protein_coding protein_coding MGP_C57BL6NJ_T0045798.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100844632 100888639 + MGP_C57BL6NJ_P0045798 Igsf5 protein_coding protein_coding MGP_C57BL6NJ_T0045799.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100844632 101010230 + MGP_C57BL6NJ_P0045799 Igsf5 protein_coding protein_coding MGP_C57BL6NJ_T0045800.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100871549 100887936 + Igsf5 protein_coding processed_transcript MGP_C57BL6NJ_T0045801.1 MGP_C57BL6NJ_G0023502.1 mouse_genomes_project 16 100881013 100902042 + MGP_C57BL6NJ_P0045801 Igsf5 protein_coding protein_coding MGP_C57BL6NJ_T0007037.1 MGP_C57BL6NJ_G0005799.1 mouse_genomes_project 16 79583505 79592604 - lincRNA lincRNA MGP_C57BL6NJ_T0007038.1 MGP_C57BL6NJ_G0005799.1 mouse_genomes_project 16 79588025 79592610 - lincRNA lincRNA MGP_C57BL6NJ_T0006990.1 MGP_C57BL6NJ_G0005761.1 mouse_genomes_project 16 7810106 7823385 + lincRNA lincRNA MGP_C57BL6NJ_T0100037.1 MGP_C57BL6NJ_G0038083.1 mouse_genomes_project 16 35636311 35636415 + Gm22263 snRNA snRNA MGP_C57BL6NJ_T0099217.1 MGP_C57BL6NJ_G0037281.1 mouse_genomes_project 16 32007684 32008083 - Gm23916 ribozyme ribozyme MGP_C57BL6NJ_T0043579.1 MGP_C57BL6NJ_G0022926.1 mouse_genomes_project 16 7758613 7760342 - MGP_C57BL6NJ_P0043579 Socs1 protein_coding protein_coding MGP_C57BL6NJ_T0006998.1 MGP_C57BL6NJ_G0005768.1 mouse_genomes_project 16 14374077 14375669 + 1700056N10Rik lincRNA lincRNA MGP_C57BL6NJ_T0043318.1 MGP_C57BL6NJ_G0022862.1 mouse_genomes_project 16 86340 87282 + MGP_C57BL6NJ_P0043318 Olfr161 protein_coding protein_coding MGP_C57BL6NJ_T0100038.1 MGP_C57BL6NJ_G0038084.1 mouse_genomes_project 16 35656879 35656982 + Gm25903 snRNA snRNA MGP_C57BL6NJ_T0100016.1 MGP_C57BL6NJ_G0038062.1 mouse_genomes_project 16 14327337 14327432 - Gm22558 snRNA snRNA MGP_C57BL6NJ_T0017988.1 MGP_C57BL6NJ_G0015719.1 mouse_genomes_project 16 95009242 95021264 + 4931406G06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0044442.1 MGP_C57BL6NJ_G0023131.1 mouse_genomes_project 16 29131062 29134137 + MGP_C57BL6NJ_P0044442 Fam43a protein_coding protein_coding MGP_C57BL6NJ_T0043622.1 MGP_C57BL6NJ_G0022938.1 mouse_genomes_project 16 8242970 8280841 - MGP_C57BL6NJ_P0043622 Gspt1 protein_coding protein_coding MGP_C57BL6NJ_T0043623.1 MGP_C57BL6NJ_G0022938.1 mouse_genomes_project 16 8243730 8280780 - MGP_C57BL6NJ_P0043623 Gspt1 protein_coding protein_coding MGP_C57BL6NJ_T0043624.1 MGP_C57BL6NJ_G0022938.1 mouse_genomes_project 16 8244079 8248177 - MGP_C57BL6NJ_P0043624 Gspt1 protein_coding protein_coding MGP_C57BL6NJ_T0043625.1 MGP_C57BL6NJ_G0022938.1 mouse_genomes_project 16 8246263 8252196 - Gspt1 protein_coding retained_intron MGP_C57BL6NJ_T0043626.1 MGP_C57BL6NJ_G0022938.1 mouse_genomes_project 16 8254590 8262483 - Gspt1 protein_coding retained_intron MGP_C57BL6NJ_T0044682.1 MGP_C57BL6NJ_G0023188.1 mouse_genomes_project 16 34911025 34952635 - MGP_C57BL6NJ_P0044682 Parp14 protein_coding protein_coding MGP_C57BL6NJ_T0044683.1 MGP_C57BL6NJ_G0023188.1 mouse_genomes_project 16 34938463 34952473 - Parp14 protein_coding retained_intron MGP_C57BL6NJ_T0044684.1 MGP_C57BL6NJ_G0023188.1 mouse_genomes_project 16 34947020 34952473 - Parp14 protein_coding retained_intron MGP_C57BL6NJ_T0043712.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570112 11692852 + MGP_C57BL6NJ_P0043712 Abcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043713.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570112 11692852 + MGP_C57BL6NJ_P0043713 Abcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043714.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570112 11692852 + MGP_C57BL6NJ_P0043714 Abcc1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043715.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570114 11694687 + MGP_C57BL6NJ_P0043715 Abcc1 protein_coding protein_coding MGP_C57BL6NJ_T0043716.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570130 11608349 + MGP_C57BL6NJ_P0043716 Abcc1 protein_coding protein_coding MGP_C57BL6NJ_T0043717.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11570135 11616865 + MGP_C57BL6NJ_P0043717 Abcc1 protein_coding protein_coding MGP_C57BL6NJ_T0043718.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11574270 11603387 + MGP_C57BL6NJ_P0043718 Abcc1 protein_coding protein_coding MGP_C57BL6NJ_T0043719.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11605896 11606271 + Abcc1 protein_coding processed_transcript MGP_C57BL6NJ_T0043720.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11614163 11634235 + Abcc1 protein_coding retained_intron MGP_C57BL6NJ_T0043721.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11679916 11687186 + Abcc1 protein_coding retained_intron MGP_C57BL6NJ_T0043722.1 MGP_C57BL6NJ_G0022960.1 mouse_genomes_project 16 11679921 11692992 + Abcc1 protein_coding retained_intron MGP_C57BL6NJ_T0044989.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44904571 44923695 - MGP_C57BL6NJ_P0044989 Slc35a5 protein_coding protein_coding MGP_C57BL6NJ_T0044990.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44906934 44923555 - MGP_C57BL6NJ_P0044990 Slc35a5 protein_coding protein_coding MGP_C57BL6NJ_T0044991.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44909015 44916910 - Slc35a5 protein_coding retained_intron MGP_C57BL6NJ_T0044992.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44909158 44923633 - MGP_C57BL6NJ_P0044992 Slc35a5 protein_coding protein_coding MGP_C57BL6NJ_T0044993.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44909178 44923172 - MGP_C57BL6NJ_P0044993 Slc35a5 protein_coding protein_coding MGP_C57BL6NJ_T0044994.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44917550 44923644 - Slc35a5 protein_coding retained_intron MGP_C57BL6NJ_T0044995.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44917593 44923442 - MGP_C57BL6NJ_P0044995 Slc35a5 protein_coding protein_coding MGP_C57BL6NJ_T0044996.1 MGP_C57BL6NJ_G0023261.1 mouse_genomes_project 16 44919662 44923589 - Slc35a5 protein_coding retained_intron MGP_C57BL6NJ_T0044197.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18338304 18359791 + MGP_C57BL6NJ_P0044197 protein_coding protein_coding MGP_C57BL6NJ_T0044198.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18338356 18359791 + MGP_C57BL6NJ_P0044198 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044199.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18338368 18339407 + protein_coding processed_transcript MGP_C57BL6NJ_T0044200.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18343129 18359798 + MGP_C57BL6NJ_P0044200 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044201.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18343129 18359798 + MGP_C57BL6NJ_P0044201 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044202.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18354788 18355498 + protein_coding processed_transcript MGP_C57BL6NJ_T0044203.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18355133 18356150 + protein_coding processed_transcript MGP_C57BL6NJ_T0044204.1 MGP_C57BL6NJ_G0023067.1 mouse_genomes_project 16 18355200 18357891 + protein_coding processed_transcript MGP_C57BL6NJ_T0044377.1 MGP_C57BL6NJ_G0023115.1 mouse_genomes_project 16 25653702 25673413 - MGP_C57BL6NJ_P0044377 Uts2b protein_coding protein_coding MGP_C57BL6NJ_T0045432.1 MGP_C57BL6NJ_G0023415.1 mouse_genomes_project 16 92576261 92576956 - MGP_C57BL6NJ_P0045432 Krtap19-2 protein_coding protein_coding MGP_C57BL6NJ_T0045372.1 MGP_C57BL6NJ_G0023388.1 mouse_genomes_project 16 88329504 88563855 - MGP_C57BL6NJ_P0045372 App protein_coding protein_coding MGP_C57BL6NJ_T0044522.1 MGP_C57BL6NJ_G0023151.1 mouse_genomes_project 16 30971520 30989431 + MGP_C57BL6NJ_P0044522 Rnf168 protein_coding protein_coding MGP_C57BL6NJ_T0044523.1 MGP_C57BL6NJ_G0023151.1 mouse_genomes_project 16 30971522 30997830 + MGP_C57BL6NJ_P0044523 Rnf168 protein_coding protein_coding MGP_C57BL6NJ_T0044524.1 MGP_C57BL6NJ_G0023151.1 mouse_genomes_project 16 30971522 30998358 + MGP_C57BL6NJ_P0044524 Rnf168 protein_coding protein_coding MGP_C57BL6NJ_T0017965.1 MGP_C57BL6NJ_G0015713.1 mouse_genomes_project 16 59190412 59193811 - 4930461C15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0045258.1 MGP_C57BL6NJ_G0023351.1 mouse_genomes_project 16 60586716 61640329 - MGP_C57BL6NJ_P0045258 Epha6 protein_coding protein_coding MGP_C57BL6NJ_T0045259.1 MGP_C57BL6NJ_G0023351.1 mouse_genomes_project 16 60694200 60964478 - MGP_C57BL6NJ_P0045259 Epha6 protein_coding protein_coding MGP_C57BL6NJ_T0045260.1 MGP_C57BL6NJ_G0023351.1 mouse_genomes_project 16 61438080 61640612 - Epha6 protein_coding retained_intron MGP_C57BL6NJ_T0045261.1 MGP_C57BL6NJ_G0023351.1 mouse_genomes_project 16 61504853 61640300 - Epha6 protein_coding processed_transcript MGP_C57BL6NJ_T0043584.1 MGP_C57BL6NJ_G0022930.1 mouse_genomes_project 16 7771117 7771678 - MGP_C57BL6NJ_P0043584 Prm1 protein_coding protein_coding MGP_C57BL6NJ_T0013473.1 MGP_C57BL6NJ_G0011518.1 mouse_genomes_project 16 34620229 34620465 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044247.1 MGP_C57BL6NJ_G0023074.1 mouse_genomes_project 16 18904911 18906786 - MGP_C57BL6NJ_P0044247 Teddm3 protein_coding protein_coding MGP_C57BL6NJ_T0045276.1 MGP_C57BL6NJ_G0023357.1 mouse_genomes_project 16 65882610 65883946 - MGP_C57BL6NJ_P0045276 Csnka2ip protein_coding protein_coding MGP_C57BL6NJ_T0044205.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18368850 18380221 + MGP_C57BL6NJ_P0044205 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044206.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18368852 18379751 + MGP_C57BL6NJ_P0044206 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044207.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373548 18394915 + MGP_C57BL6NJ_P0044207 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044208.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373571 18394914 + MGP_C57BL6NJ_P0044208 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044209.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373574 18394912 + MGP_C57BL6NJ_P0044209 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044210.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373574 18384662 + MGP_C57BL6NJ_P0044210 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044211.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373580 18394914 + MGP_C57BL6NJ_P0044211 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044212.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373595 18384668 + MGP_C57BL6NJ_P0044212 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044213.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373596 18384668 + MGP_C57BL6NJ_P0044213 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044214.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373648 18380097 + MGP_C57BL6NJ_P0044214 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044215.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18373648 18394915 + MGP_C57BL6NJ_P0044215 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044216.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374120 18394915 + MGP_C57BL6NJ_P0044216 Eif4g1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044217.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374223 18378624 + MGP_C57BL6NJ_P0044217 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044218.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374245 18394914 + MGP_C57BL6NJ_P0044218 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044219.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374264 18379489 + MGP_C57BL6NJ_P0044219 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044220.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374342 18394912 + MGP_C57BL6NJ_P0044220 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044221.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374639 18379485 + MGP_C57BL6NJ_P0044221 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044222.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18374936 18379500 + MGP_C57BL6NJ_P0044222 Eif4g1 protein_coding protein_coding MGP_C57BL6NJ_T0044223.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18379101 18394912 + Eif4g1 protein_coding retained_intron MGP_C57BL6NJ_T0044224.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18379231 18380411 + Eif4g1 protein_coding processed_transcript MGP_C57BL6NJ_T0044225.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18381864 18382559 + Eif4g1 protein_coding retained_intron MGP_C57BL6NJ_T0044226.1 MGP_C57BL6NJ_G0023068.1 mouse_genomes_project 16 18389793 18390480 + Eif4g1 protein_coding retained_intron MGP_C57BL6NJ_T0010346.1 MGP_C57BL6NJ_G0008431.1 mouse_genomes_project 16 23016429 23016515 + Mir28a miRNA miRNA MGP_C57BL6NJ_T0013505.1 MGP_C57BL6NJ_G0011550.1 mouse_genomes_project 16 78209044 78209474 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101349.1 MGP_C57BL6NJ_G0039395.1 mouse_genomes_project 16 76395741 76395876 - Gm22163 snoRNA snoRNA MGP_C57BL6NJ_T0003799.1 MGP_C57BL6NJ_G0003428.1 mouse_genomes_project 16 1325862 1326803 + Gm15859 antisense antisense MGP_C57BL6NJ_T0045320.1 MGP_C57BL6NJ_G0023372.1 mouse_genomes_project 16 78219430 78231062 - MGP_C57BL6NJ_P0045320 Hspa13 protein_coding protein_coding MGP_C57BL6NJ_T0045321.1 MGP_C57BL6NJ_G0023372.1 mouse_genomes_project 16 78220880 78231032 - MGP_C57BL6NJ_P0045321 Hspa13 protein_coding protein_coding MGP_C57BL6NJ_T0045322.1 MGP_C57BL6NJ_G0023372.1 mouse_genomes_project 16 78223428 78231023 - Hspa13 protein_coding retained_intron MGP_C57BL6NJ_T0101329.1 MGP_C57BL6NJ_G0039375.1 mouse_genomes_project 16 34419238 34419441 + Gm25079 snoRNA snoRNA MGP_C57BL6NJ_T0100057.1 MGP_C57BL6NJ_G0038103.1 mouse_genomes_project 16 87606758 87606865 + Gm24508 snRNA snRNA MGP_C57BL6NJ_T0101325.1 MGP_C57BL6NJ_G0039371.1 mouse_genomes_project 16 29455484 29455619 + Gm25375 snoRNA snoRNA MGP_C57BL6NJ_T0102193.1 MGP_C57BL6NJ_G0040206.1 mouse_genomes_project 16 98632581 98635093 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102888.1 MGP_C57BL6NJ_G0040682.1 mouse_genomes_project 16 59757964 59758535 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007002.1 MGP_C57BL6NJ_G0005772.1 mouse_genomes_project 16 19643525 19655300 + 1300002E11Rik lincRNA lincRNA MGP_C57BL6NJ_T0007003.1 MGP_C57BL6NJ_G0005772.1 mouse_genomes_project 16 19643540 19658133 + 1300002E11Rik lincRNA lincRNA MGP_C57BL6NJ_T0007004.1 MGP_C57BL6NJ_G0005772.1 mouse_genomes_project 16 19643570 19655300 + 1300002E11Rik lincRNA lincRNA MGP_C57BL6NJ_T0043350.1 MGP_C57BL6NJ_G0022871.1 mouse_genomes_project 16 390268 405270 + MGP_C57BL6NJ_P0043350 Cluap1 protein_coding protein_coding MGP_C57BL6NJ_T0043351.1 MGP_C57BL6NJ_G0022871.1 mouse_genomes_project 16 390292 424934 + MGP_C57BL6NJ_P0043351 Cluap1 protein_coding protein_coding MGP_C57BL6NJ_T0043352.1 MGP_C57BL6NJ_G0022871.1 mouse_genomes_project 16 390506 395040 + Cluap1 protein_coding retained_intron MGP_C57BL6NJ_T0043353.1 MGP_C57BL6NJ_G0022871.1 mouse_genomes_project 16 390543 413731 + MGP_C57BL6NJ_P0043353 Cluap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043354.1 MGP_C57BL6NJ_G0022871.1 mouse_genomes_project 16 390573 405326 + MGP_C57BL6NJ_P0043354 Cluap1 protein_coding protein_coding MGP_C57BL6NJ_T0045428.1 MGP_C57BL6NJ_G0023413.1 mouse_genomes_project 16 92519415 92528696 + MGP_C57BL6NJ_P0045428 Krtap15 protein_coding protein_coding MGP_C57BL6NJ_T0045430.1 MGP_C57BL6NJ_G0023413.1 mouse_genomes_project 16 92528205 92529056 + MGP_C57BL6NJ_P0045430 Krtap15 protein_coding protein_coding MGP_C57BL6NJ_T0043844.1 MGP_C57BL6NJ_G0022990.1 mouse_genomes_project 16 14598815 14629732 + MGP_C57BL6NJ_P0043844 Hic2 protein_coding protein_coding MGP_C57BL6NJ_T0043845.1 MGP_C57BL6NJ_G0022990.1 mouse_genomes_project 16 14598907 14627897 + MGP_C57BL6NJ_P0043845 Hic2 protein_coding protein_coding MGP_C57BL6NJ_T0044536.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31348307 31375753 + MGP_C57BL6NJ_P0044536 Tfrc protein_coding protein_coding MGP_C57BL6NJ_T0044537.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31348370 31366700 + MGP_C57BL6NJ_P0044537 Tfrc protein_coding protein_coding MGP_C57BL6NJ_T0044538.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31348637 31352614 + MGP_C57BL6NJ_P0044538 Tfrc protein_coding protein_coding MGP_C57BL6NJ_T0044539.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31354616 31356541 + Tfrc protein_coding retained_intron MGP_C57BL6NJ_T0044540.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31357663 31360266 + Tfrc protein_coding retained_intron MGP_C57BL6NJ_T0044541.1 MGP_C57BL6NJ_G0023158.1 mouse_genomes_project 16 31367400 31375749 + Tfrc protein_coding retained_intron MGP_C57BL6NJ_T0007014.1 MGP_C57BL6NJ_G0005782.1 mouse_genomes_project 16 32274680 32275553 - 1700007L15Rik lincRNA lincRNA MGP_C57BL6NJ_T0013486.1 MGP_C57BL6NJ_G0011531.1 mouse_genomes_project 16 45199287 45201523 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044972.1 MGP_C57BL6NJ_G0023258.1 mouse_genomes_project 16 44621299 44672713 + MGP_C57BL6NJ_P0044972 Cd200r2 protein_coding protein_coding MGP_C57BL6NJ_T0045061.1 MGP_C57BL6NJ_G0023281.1 mouse_genomes_project 16 48876735 48878771 + MGP_C57BL6NJ_P0045061 Retnlb protein_coding protein_coding MGP_C57BL6NJ_T0017949.1 MGP_C57BL6NJ_G0015703.1 mouse_genomes_project 16 1871811 1909159 + Gm15983 processed_transcript processed_transcript MGP_C57BL6NJ_T0013515.1 MGP_C57BL6NJ_G0011560.1 mouse_genomes_project 16 98931227 98931438 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013434.1 MGP_C57BL6NJ_G0011479.1 mouse_genomes_project 16 5437848 5438383 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007048.1 MGP_C57BL6NJ_G0005805.1 mouse_genomes_project 16 97529433 97571512 - 1700029J03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007049.1 MGP_C57BL6NJ_G0005805.1 mouse_genomes_project 16 97534571 97606354 - 1700029J03Rik lincRNA lincRNA MGP_C57BL6NJ_T0043399.1 MGP_C57BL6NJ_G0022880.1 mouse_genomes_project 16 1095289 1111617 - MGP_C57BL6NJ_P0043399 Tfap4 protein_coding protein_coding MGP_C57BL6NJ_T0044240.1 MGP_C57BL6NJ_G0023071.1 mouse_genomes_project 16 18423040 18429310 + MGP_C57BL6NJ_P0044240 Polr2h protein_coding protein_coding MGP_C57BL6NJ_T0044241.1 MGP_C57BL6NJ_G0023071.1 mouse_genomes_project 16 18423547 18429050 + Polr2h protein_coding processed_transcript MGP_C57BL6NJ_T0011675.1 MGP_C57BL6NJ_G0009760.1 mouse_genomes_project 16 67440675 67440988 + Gm22217 misc_RNA misc_RNA MGP_C57BL6NJ_T0043512.1 MGP_C57BL6NJ_G0022910.1 mouse_genomes_project 16 5448461 5452287 - MGP_C57BL6NJ_P0043512 Tmem186 protein_coding protein_coding MGP_C57BL6NJ_T0003805.1 MGP_C57BL6NJ_G0003433.1 mouse_genomes_project 16 10880870 10890414 + Pla2g10os antisense antisense MGP_C57BL6NJ_T0013479.1 MGP_C57BL6NJ_G0011524.1 mouse_genomes_project 16 38075472 38076027 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043486.1 MGP_C57BL6NJ_G0022904.1 mouse_genomes_project 16 1850815 1862100 + MGP_C57BL6NJ_P0043486 Alg1 protein_coding protein_coding MGP_C57BL6NJ_T0043487.1 MGP_C57BL6NJ_G0022904.1 mouse_genomes_project 16 1850832 1856935 + Alg1 protein_coding retained_intron MGP_C57BL6NJ_T0043488.1 MGP_C57BL6NJ_G0022904.1 mouse_genomes_project 16 1850832 1862109 + MGP_C57BL6NJ_P0043488 Alg1 protein_coding protein_coding MGP_C57BL6NJ_T0043489.1 MGP_C57BL6NJ_G0022904.1 mouse_genomes_project 16 1852364 1857715 + Alg1 protein_coding processed_transcript MGP_C57BL6NJ_T0043490.1 MGP_C57BL6NJ_G0022904.1 mouse_genomes_project 16 1857270 1860921 + Alg1 protein_coding retained_intron MGP_C57BL6NJ_T0045674.1 MGP_C57BL6NJ_G0023486.1 mouse_genomes_project 16 98583045 98594716 + MGP_C57BL6NJ_P0045674 Ripply3 protein_coding protein_coding MGP_C57BL6NJ_T0045084.1 MGP_C57BL6NJ_G0023289.1 mouse_genomes_project 16 49991812 50054212 + MGP_C57BL6NJ_P0045084 Cd47 protein_coding protein_coding MGP_C57BL6NJ_T0045085.1 MGP_C57BL6NJ_G0023289.1 mouse_genomes_project 16 49991981 50054221 + MGP_C57BL6NJ_P0045085 Cd47 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045086.1 MGP_C57BL6NJ_G0023289.1 mouse_genomes_project 16 50003987 50050390 + MGP_C57BL6NJ_P0045086 Cd47 protein_coding protein_coding MGP_C57BL6NJ_T0045343.1 MGP_C57BL6NJ_G0023381.1 mouse_genomes_project 16 81638513 81673876 + MGP_C57BL6NJ_P0045343 Chodl protein_coding protein_coding MGP_C57BL6NJ_T0045344.1 MGP_C57BL6NJ_G0023381.1 mouse_genomes_project 16 81638513 81669302 + MGP_C57BL6NJ_P0045344 Chodl protein_coding protein_coding MGP_C57BL6NJ_T0045345.1 MGP_C57BL6NJ_G0023381.1 mouse_genomes_project 16 81638513 81672047 + MGP_C57BL6NJ_P0045345 Chodl protein_coding protein_coding MGP_C57BL6NJ_T0010332.1 MGP_C57BL6NJ_G0008417.1 mouse_genomes_project 16 14463809 14463891 - Mir130b miRNA miRNA MGP_C57BL6NJ_T0045237.1 MGP_C57BL6NJ_G0023342.1 mouse_genomes_project 16 60180624 60181705 + MGP_C57BL6NJ_P0045237 Olfr203 protein_coding protein_coding MGP_C57BL6NJ_T0045238.1 MGP_C57BL6NJ_G0023342.1 mouse_genomes_project 16 60180627 60181705 + MGP_C57BL6NJ_P0045238 Olfr203 protein_coding protein_coding MGP_C57BL6NJ_T0044997.1 MGP_C57BL6NJ_G0023262.1 mouse_genomes_project 16 44923773 44958102 + MGP_C57BL6NJ_P0044997 Atg3 protein_coding protein_coding MGP_C57BL6NJ_T0044998.1 MGP_C57BL6NJ_G0023262.1 mouse_genomes_project 16 44935446 44957458 + Atg3 protein_coding retained_intron MGP_C57BL6NJ_T0044713.1 MGP_C57BL6NJ_G0023198.1 mouse_genomes_project 16 35448035 35466000 + MGP_C57BL6NJ_P0044713 protein_coding protein_coding MGP_C57BL6NJ_T0045712.1 MGP_C57BL6NJ_G0023489.1 mouse_genomes_project 16 98793457 98825968 - MGP_C57BL6NJ_P0045712 Dscr3 protein_coding protein_coding MGP_C57BL6NJ_T0045713.1 MGP_C57BL6NJ_G0023489.1 mouse_genomes_project 16 98797774 98807777 - Dscr3 protein_coding processed_transcript MGP_C57BL6NJ_T0045714.1 MGP_C57BL6NJ_G0023489.1 mouse_genomes_project 16 98799854 98825570 - Dscr3 protein_coding retained_intron MGP_C57BL6NJ_T0045715.1 MGP_C57BL6NJ_G0023489.1 mouse_genomes_project 16 98807049 98825579 - Dscr3 protein_coding retained_intron MGP_C57BL6NJ_T0045716.1 MGP_C57BL6NJ_G0023489.1 mouse_genomes_project 16 98808743 98825555 - Dscr3 protein_coding retained_intron MGP_C57BL6NJ_T0043736.1 MGP_C57BL6NJ_G0022968.1 mouse_genomes_project 16 13098212 13114319 - MGP_C57BL6NJ_P0043736 Mzt2 protein_coding protein_coding MGP_C57BL6NJ_T0043737.1 MGP_C57BL6NJ_G0022968.1 mouse_genomes_project 16 13098214 13113694 - Mzt2 protein_coding retained_intron MGP_C57BL6NJ_T0043738.1 MGP_C57BL6NJ_G0022968.1 mouse_genomes_project 16 13098221 13114341 - MGP_C57BL6NJ_P0043738 Mzt2 protein_coding protein_coding MGP_C57BL6NJ_T0044231.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18408342 18421493 - MGP_C57BL6NJ_P0044231 Clcn2 protein_coding protein_coding MGP_C57BL6NJ_T0044232.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18408366 18421490 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0044233.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18408376 18421540 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0044234.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18408601 18421487 - MGP_C57BL6NJ_P0044234 Clcn2 protein_coding protein_coding MGP_C57BL6NJ_T0044235.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18410916 18423122 - MGP_C57BL6NJ_P0044235 Clcn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044236.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18412552 18414502 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0044237.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18413084 18414113 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0044238.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18415466 18417341 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0044239.1 MGP_C57BL6NJ_G0023070.1 mouse_genomes_project 16 18417686 18419044 - Clcn2 protein_coding retained_intron MGP_C57BL6NJ_T0011677.1 MGP_C57BL6NJ_G0009762.1 mouse_genomes_project 16 84262106 84262419 - Gm26023 misc_RNA misc_RNA MGP_C57BL6NJ_T0045064.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49005471 49021576 - Dzip3 protein_coding retained_intron MGP_C57BL6NJ_T0045065.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49005471 49087793 - MGP_C57BL6NJ_P0045065 Dzip3 protein_coding protein_coding MGP_C57BL6NJ_T0045066.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49005473 49021484 - Dzip3 protein_coding retained_intron MGP_C57BL6NJ_T0045067.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49007118 49087569 - MGP_C57BL6NJ_P0045067 Dzip3 protein_coding protein_coding MGP_C57BL6NJ_T0045068.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49008105 49012108 - MGP_C57BL6NJ_P0045068 Dzip3 protein_coding protein_coding MGP_C57BL6NJ_T0045069.1 MGP_C57BL6NJ_G0023284.1 mouse_genomes_project 16 49008325 49013654 - Dzip3 protein_coding retained_intron MGP_C57BL6NJ_T0003816.1 MGP_C57BL6NJ_G0003443.1 mouse_genomes_project 16 30788073 30794986 + Gm15729 antisense antisense MGP_C57BL6NJ_T0100056.1 MGP_C57BL6NJ_G0038102.1 mouse_genomes_project 16 83629716 83629815 + Gm24773 snRNA snRNA MGP_C57BL6NJ_T0003802.1 MGP_C57BL6NJ_G0003431.1 mouse_genomes_project 16 8732242 8735931 - Gm4279 antisense antisense MGP_C57BL6NJ_T0100048.1 MGP_C57BL6NJ_G0038094.1 mouse_genomes_project 16 56180568 56180675 - Gm23003 snRNA snRNA MGP_C57BL6NJ_T0045523.1 MGP_C57BL6NJ_G0023454.1 mouse_genomes_project 16 95248364 95250526 + MGP_C57BL6NJ_P0045523 Olig1 protein_coding protein_coding MGP_C57BL6NJ_T0044670.1 MGP_C57BL6NJ_G0023184.1 mouse_genomes_project 16 34435800 34532064 - MGP_C57BL6NJ_P0044670 Pdia5 protein_coding protein_coding MGP_C57BL6NJ_T0043586.1 MGP_C57BL6NJ_G0022932.1 mouse_genomes_project 16 7824959 7836577 + MGP_C57BL6NJ_P0043586 Rmi2 protein_coding protein_coding MGP_C57BL6NJ_T0043587.1 MGP_C57BL6NJ_G0022932.1 mouse_genomes_project 16 7824968 7886021 + MGP_C57BL6NJ_P0043587 Rmi2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003812.1 MGP_C57BL6NJ_G0003440.1 mouse_genomes_project 16 20455648 20461826 + 9230117E06Rik antisense antisense MGP_C57BL6NJ_T0043740.1 MGP_C57BL6NJ_G0022970.1 mouse_genomes_project 16 13483363 13498665 + MGP_C57BL6NJ_P0043740 Pkp2 protein_coding protein_coding MGP_C57BL6NJ_T0043741.1 MGP_C57BL6NJ_G0022970.1 mouse_genomes_project 16 13483363 13519676 + MGP_C57BL6NJ_P0043741 Pkp2 protein_coding protein_coding MGP_C57BL6NJ_T0043742.1 MGP_C57BL6NJ_G0022970.1 mouse_genomes_project 16 13483363 13543930 + MGP_C57BL6NJ_P0043742 Pkp2 protein_coding protein_coding MGP_C57BL6NJ_T0001082.1 MGP_C57BL6NJ_G0000990.1 mouse_genomes_project 16 694302 697167 - TEC TEC MGP_C57BL6NJ_T0100043.1 MGP_C57BL6NJ_G0038089.1 mouse_genomes_project 16 45847402 45847509 - Gm24754 snRNA snRNA MGP_C57BL6NJ_T0044505.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30830988 30850866 - MGP_C57BL6NJ_P0044505 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044506.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30830998 30850838 - MGP_C57BL6NJ_P0044506 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044507.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30830998 30836076 - MGP_C57BL6NJ_P0044507 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044508.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30831028 30850757 - MGP_C57BL6NJ_P0044508 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044509.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30831028 30850775 - MGP_C57BL6NJ_P0044509 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044510.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30832885 30850875 - MGP_C57BL6NJ_P0044510 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044511.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30833018 30850757 - Nrros protein_coding processed_transcript MGP_C57BL6NJ_T0044512.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30833030 30836313 - Nrros protein_coding processed_transcript MGP_C57BL6NJ_T0044513.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30833077 30850763 - MGP_C57BL6NJ_P0044513 Nrros protein_coding protein_coding MGP_C57BL6NJ_T0044514.1 MGP_C57BL6NJ_G0023146.1 mouse_genomes_project 16 30835746 30850738 - Nrros protein_coding processed_transcript MGP_C57BL6NJ_T0011678.1 MGP_C57BL6NJ_G0009763.1 mouse_genomes_project 16 87957256 87957578 - Gm25292 misc_RNA misc_RNA MGP_C57BL6NJ_T0099031.1 MGP_C57BL6NJ_G0037095.1 mouse_genomes_project 16 37191728 37191844 + n-R5s34 rRNA rRNA MGP_C57BL6NJ_T0045416.1 MGP_C57BL6NJ_G0023401.1 mouse_genomes_project 16 92238456 92240812 - MGP_C57BL6NJ_P0045416 Cldn8 protein_coding protein_coding MGP_C57BL6NJ_T0045214.1 MGP_C57BL6NJ_G0023328.1 mouse_genomes_project 16 59712367 59727934 - MGP_C57BL6NJ_P0045214 Olfr180 protein_coding protein_coding MGP_C57BL6NJ_T0045215.1 MGP_C57BL6NJ_G0023328.1 mouse_genomes_project 16 59713768 59717040 - MGP_C57BL6NJ_P0045215 Olfr180 protein_coding protein_coding MGP_C57BL6NJ_T0044305.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154128 21160596 + MGP_C57BL6NJ_P0044305 Eif4a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044306.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154132 21155675 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044307.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154132 21159644 + MGP_C57BL6NJ_P0044307 Eif4a2 protein_coding protein_coding MGP_C57BL6NJ_T0044308.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154133 21155468 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044309.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154133 21155579 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044310.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154133 21160386 + MGP_C57BL6NJ_P0044310 Eif4a2 protein_coding protein_coding MGP_C57BL6NJ_T0044311.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154133 21160406 + MGP_C57BL6NJ_P0044311 Eif4a2 protein_coding protein_coding MGP_C57BL6NJ_T0044312.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154137 21160366 + MGP_C57BL6NJ_P0044312 Eif4a2 protein_coding protein_coding MGP_C57BL6NJ_T0044313.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154141 21175042 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044314.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154145 21157084 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044315.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154147 21156693 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044316.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154151 21155548 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044317.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154151 21160390 + MGP_C57BL6NJ_P0044317 Eif4a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044318.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154152 21160407 + MGP_C57BL6NJ_P0044318 Eif4a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044319.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154153 21156622 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044320.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154291 21157025 + Eif4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0044321.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21154956 21155845 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044322.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21155605 21156941 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0044323.1 MGP_C57BL6NJ_G0023094.1 mouse_genomes_project 16 21156419 21172932 + Eif4a2 protein_coding retained_intron MGP_C57BL6NJ_T0043828.1 MGP_C57BL6NJ_G0022986.1 mouse_genomes_project 16 14479609 14487775 - MGP_C57BL6NJ_P0043828 Ccdc116 protein_coding protein_coding MGP_C57BL6NJ_T0043829.1 MGP_C57BL6NJ_G0022986.1 mouse_genomes_project 16 14481581 14484755 - MGP_C57BL6NJ_P0043829 Ccdc116 protein_coding protein_coding MGP_C57BL6NJ_T0043830.1 MGP_C57BL6NJ_G0022986.1 mouse_genomes_project 16 14481582 14484969 - MGP_C57BL6NJ_P0043830 Ccdc116 protein_coding protein_coding MGP_C57BL6NJ_T0043831.1 MGP_C57BL6NJ_G0022986.1 mouse_genomes_project 16 14483266 14484984 - Ccdc116 protein_coding processed_transcript MGP_C57BL6NJ_T0006993.1 MGP_C57BL6NJ_G0005764.1 mouse_genomes_project 16 8198122 8215061 + 4930509G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0044521.1 MGP_C57BL6NJ_G0023150.1 mouse_genomes_project 16 30965549 30968841 + MGP_C57BL6NJ_P0044521 Smco1 protein_coding protein_coding MGP_C57BL6NJ_T0045334.1 MGP_C57BL6NJ_G0023375.1 mouse_genomes_project 16 79595797 79708844 + MGP_C57BL6NJ_P0045334 Usp25 protein_coding protein_coding MGP_C57BL6NJ_T0045784.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100671056 100699161 + MGP_C57BL6NJ_P0045784 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045785.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100671257 100699156 + MGP_C57BL6NJ_P0045785 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045786.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100671257 100694934 + MGP_C57BL6NJ_P0045786 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045787.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100671290 100690474 + MGP_C57BL6NJ_P0045787 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045788.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100671315 100694965 + MGP_C57BL6NJ_P0045788 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045789.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100675599 100690474 + MGP_C57BL6NJ_P0045789 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045790.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100676525 100694937 + MGP_C57BL6NJ_P0045790 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0045791.1 MGP_C57BL6NJ_G0023500.1 mouse_genomes_project 16 100690381 100699153 + MGP_C57BL6NJ_P0045791 Sh3bgr protein_coding protein_coding MGP_C57BL6NJ_T0043368.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537391 539706 + MGP_C57BL6NJ_P0043368 Dnase1 protein_coding protein_coding MGP_C57BL6NJ_T0043369.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537419 540474 + MGP_C57BL6NJ_P0043369 Dnase1 protein_coding protein_coding MGP_C57BL6NJ_T0043370.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537422 538471 + MGP_C57BL6NJ_P0043370 Dnase1 protein_coding protein_coding MGP_C57BL6NJ_T0043371.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537480 540474 + MGP_C57BL6NJ_P0043371 Dnase1 protein_coding protein_coding MGP_C57BL6NJ_T0043372.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537547 540473 + Dnase1 protein_coding retained_intron MGP_C57BL6NJ_T0043373.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537550 540474 + Dnase1 protein_coding retained_intron MGP_C57BL6NJ_T0043374.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537604 540325 + MGP_C57BL6NJ_P0043374 Dnase1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043375.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537725 538710 + Dnase1 protein_coding retained_intron MGP_C57BL6NJ_T0043376.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 537753 539789 + Dnase1 protein_coding retained_intron MGP_C57BL6NJ_T0043377.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 538671 539321 + Dnase1 protein_coding retained_intron MGP_C57BL6NJ_T0043378.1 MGP_C57BL6NJ_G0022875.1 mouse_genomes_project 16 539579 540474 + MGP_C57BL6NJ_P0043378 Dnase1 protein_coding protein_coding MGP_C57BL6NJ_T0043457.1 MGP_C57BL6NJ_G0022895.1 mouse_genomes_project 16 1594324 1605307 - MGP_C57BL6NJ_P0043457 Sept12 protein_coding protein_coding MGP_C57BL6NJ_T0007041.1 MGP_C57BL6NJ_G0005801.1 mouse_genomes_project 16 91397106 91406498 + 2810407A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0007042.1 MGP_C57BL6NJ_G0005801.1 mouse_genomes_project 16 91400665 91454353 + 2810407A14Rik lincRNA lincRNA MGP_C57BL6NJ_T0017992.1 MGP_C57BL6NJ_G0015723.1 mouse_genomes_project 16 95959297 95992980 + D430001F17Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0102602.1 MGP_C57BL6NJ_G0040415.1 mouse_genomes_project 16 18160693 18162802 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0013488.1 MGP_C57BL6NJ_G0011533.1 mouse_genomes_project 16 45325918 45327284 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003848.1 MGP_C57BL6NJ_G0003467.1 mouse_genomes_project 16 100525813 100535046 + 1700093J21Rik antisense antisense MGP_C57BL6NJ_T0044098.1 MGP_C57BL6NJ_G0023041.1 mouse_genomes_project 16 16998033 16998975 - MGP_C57BL6NJ_P0044098 Olfr165 protein_coding protein_coding MGP_C57BL6NJ_T0045792.1 MGP_C57BL6NJ_G0023501.1 mouse_genomes_project 16 100707262 100795587 + MGP_C57BL6NJ_P0045792 B3galt5 protein_coding protein_coding MGP_C57BL6NJ_T0045793.1 MGP_C57BL6NJ_G0023501.1 mouse_genomes_project 16 100742788 100789502 + B3galt5 protein_coding processed_transcript MGP_C57BL6NJ_T0045794.1 MGP_C57BL6NJ_G0023501.1 mouse_genomes_project 16 100742925 100789503 + B3galt5 protein_coding processed_transcript MGP_C57BL6NJ_T0045795.1 MGP_C57BL6NJ_G0023501.1 mouse_genomes_project 16 100750112 100795585 + MGP_C57BL6NJ_P0045795 B3galt5 protein_coding protein_coding MGP_C57BL6NJ_T0045437.1 MGP_C57BL6NJ_G0023420.1 mouse_genomes_project 16 92637200 92637661 - MGP_C57BL6NJ_P0045437 Krtap19-9b protein_coding protein_coding MGP_C57BL6NJ_T0043891.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14913577 14916732 - MGP_C57BL6NJ_P0043891 Thap7 protein_coding protein_coding MGP_C57BL6NJ_T0043892.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14913781 14916708 - Thap7 protein_coding retained_intron MGP_C57BL6NJ_T0043893.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14913845 14916648 - Thap7 protein_coding retained_intron MGP_C57BL6NJ_T0043894.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14913939 14916277 - Thap7 protein_coding retained_intron MGP_C57BL6NJ_T0043895.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14914096 14914744 - Thap7 protein_coding retained_intron MGP_C57BL6NJ_T0043896.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14914177 14916651 - MGP_C57BL6NJ_P0043896 Thap7 protein_coding protein_coding MGP_C57BL6NJ_T0043897.1 MGP_C57BL6NJ_G0022998.1 mouse_genomes_project 16 14914598 14916252 - Thap7 protein_coding retained_intron MGP_C57BL6NJ_T0043964.1 MGP_C57BL6NJ_G0023010.1 mouse_genomes_project 16 15323348 15327048 + MGP_C57BL6NJ_P0043964 Tssk1 protein_coding protein_coding MGP_C57BL6NJ_T0045198.1 MGP_C57BL6NJ_G0023320.1 mouse_genomes_project 16 59461795 59474033 + MGP_C57BL6NJ_P0045198 Cpox protein_coding protein_coding MGP_C57BL6NJ_T0003813.1 MGP_C57BL6NJ_G0003441.1 mouse_genomes_project 16 24206762 24210630 + Gm4524 antisense antisense MGP_C57BL6NJ_T0011671.1 MGP_C57BL6NJ_G0009756.1 mouse_genomes_project 16 40602677 40602828 - Gm27717 misc_RNA misc_RNA MGP_C57BL6NJ_T0013460.1 MGP_C57BL6NJ_G0011505.1 mouse_genomes_project 16 19943979 19944403 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100012.1 MGP_C57BL6NJ_G0038058.1 mouse_genomes_project 16 7165803 7167345 + Gm24667 snRNA snRNA MGP_C57BL6NJ_T0010352.1 MGP_C57BL6NJ_G0008437.1 mouse_genomes_project 16 36046832 36046902 + Gm22617 miRNA miRNA MGP_C57BL6NJ_T0017960.1 MGP_C57BL6NJ_G0015711.1 mouse_genomes_project 16 42374078 42523021 - 4932412D23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017961.1 MGP_C57BL6NJ_G0015711.1 mouse_genomes_project 16 42446581 42523196 - 4932412D23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017962.1 MGP_C57BL6NJ_G0015711.1 mouse_genomes_project 16 42446942 42523174 - 4932412D23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0017963.1 MGP_C57BL6NJ_G0015711.1 mouse_genomes_project 16 42447094 42523180 - 4932412D23Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0045348.1 MGP_C57BL6NJ_G0023383.1 mouse_genomes_project 16 84197743 84645515 + MGP_C57BL6NJ_P0045348 Ncam2 protein_coding protein_coding MGP_C57BL6NJ_T0045349.1 MGP_C57BL6NJ_G0023383.1 mouse_genomes_project 16 84197743 84678312 + MGP_C57BL6NJ_P0045349 Ncam2 protein_coding protein_coding MGP_C57BL6NJ_T0013451.1 MGP_C57BL6NJ_G0011496.1 mouse_genomes_project 16 15116311 15116749 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0043640.1 MGP_C57BL6NJ_G0022942.1 mouse_genomes_project 16 8944820 8975595 + MGP_C57BL6NJ_P0043640 Gm9961 protein_coding protein_coding MGP_C57BL6NJ_T0013469.1 MGP_C57BL6NJ_G0011514.1 mouse_genomes_project 16 30638430 30638875 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045454.1 MGP_C57BL6NJ_G0023435.1 mouse_genomes_project 16 93180246 93180994 - MGP_C57BL6NJ_P0045454 Krtap21-1 protein_coding protein_coding MGP_C57BL6NJ_T0044807.1 MGP_C57BL6NJ_G0023218.1 mouse_genomes_project 16 37187859 37193375 - Gm36028 protein_coding retained_intron MGP_C57BL6NJ_T0044808.1 MGP_C57BL6NJ_G0023218.1 mouse_genomes_project 16 37187859 37198089 - MGP_C57BL6NJ_P0044808 Gm36028 protein_coding protein_coding MGP_C57BL6NJ_T0045441.1 MGP_C57BL6NJ_G0023424.1 mouse_genomes_project 16 92750755 92751352 + MGP_C57BL6NJ_P0045441 protein_coding protein_coding MGP_C57BL6NJ_T0045055.1 MGP_C57BL6NJ_G0023276.1 mouse_genomes_project 16 48055911 48056655 + MGP_C57BL6NJ_P0045055 Gm7275 protein_coding protein_coding MGP_C57BL6NJ_T0044529.1 MGP_C57BL6NJ_G0023155.1 mouse_genomes_project 16 31158115 31179356 + Pcyt1a protein_coding retained_intron MGP_C57BL6NJ_T0044530.1 MGP_C57BL6NJ_G0023155.1 mouse_genomes_project 16 31158137 31182544 + Pcyt1a protein_coding retained_intron MGP_C57BL6NJ_T0044531.1 MGP_C57BL6NJ_G0023155.1 mouse_genomes_project 16 31158188 31206804 + MGP_C57BL6NJ_P0044531 Pcyt1a protein_coding protein_coding MGP_C57BL6NJ_T0044532.1 MGP_C57BL6NJ_G0023155.1 mouse_genomes_project 16 31158197 31182414 + Pcyt1a protein_coding retained_intron MGP_C57BL6NJ_T0102187.1 MGP_C57BL6NJ_G0040202.1 mouse_genomes_project 16 37220086 37221176 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0101351.1 MGP_C57BL6NJ_G0039397.1 mouse_genomes_project 16 78654356 78654487 - Gm22268 snoRNA snoRNA MGP_C57BL6NJ_T0043955.1 MGP_C57BL6NJ_G0023008.1 mouse_genomes_project 16 15252132 15320797 - MGP_C57BL6NJ_P0043955 Gm20518 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013447.1 MGP_C57BL6NJ_G0011492.1 mouse_genomes_project 16 13640573 13641547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010361.1 MGP_C57BL6NJ_G0008446.1 mouse_genomes_project 16 54348129 54348194 + Gm25041 miRNA miRNA MGP_C57BL6NJ_T0017955.1 MGP_C57BL6NJ_G0015708.1 mouse_genomes_project 16 21233519 21306999 + B630019A10Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0045026.1 MGP_C57BL6NJ_G0023271.1 mouse_genomes_project 16 45533774 45548937 - MGP_C57BL6NJ_P0045026 Abhd10 protein_coding protein_coding MGP_C57BL6NJ_T0045027.1 MGP_C57BL6NJ_G0023271.1 mouse_genomes_project 16 45535600 45548884 - MGP_C57BL6NJ_P0045027 Abhd10 protein_coding protein_coding MGP_C57BL6NJ_T0045028.1 MGP_C57BL6NJ_G0023271.1 mouse_genomes_project 16 45542955 45548867 - Abhd10 protein_coding processed_transcript MGP_C57BL6NJ_T0045029.1 MGP_C57BL6NJ_G0023271.1 mouse_genomes_project 16 45546327 45548889 - Abhd10 protein_coding processed_transcript MGP_C57BL6NJ_T0045030.1 MGP_C57BL6NJ_G0023271.1 mouse_genomes_project 16 45546834 45548882 - Abhd10 protein_coding processed_transcript MGP_C57BL6NJ_T0045297.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312457 72594969 + MGP_C57BL6NJ_P0045297 Gbe1 protein_coding protein_coding MGP_C57BL6NJ_T0045298.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312571 72372677 + Gbe1 protein_coding retained_intron MGP_C57BL6NJ_T0045299.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312572 72562198 + Gbe1 protein_coding retained_intron MGP_C57BL6NJ_T0045300.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312572 72561767 + MGP_C57BL6NJ_P0045300 Gbe1 protein_coding protein_coding MGP_C57BL6NJ_T0045301.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312595 72594969 + MGP_C57BL6NJ_P0045301 Gbe1 protein_coding protein_coding MGP_C57BL6NJ_T0045302.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72312642 72594967 + MGP_C57BL6NJ_P0045302 Gbe1 protein_coding protein_coding MGP_C57BL6NJ_T0045303.1 MGP_C57BL6NJ_G0023367.1 mouse_genomes_project 16 72586271 72594751 + Gbe1 protein_coding retained_intron MGP_C57BL6NJ_T0000047.1 MGP_C57BL6NJ_G0000038.1 mouse_genomes_project 16 16651023 16651061 - MGP_C57BL6NJ_P0000047 Iglj1 IG_J_gene IG_J_gene MGP_C57BL6NJ_T0013452.1 MGP_C57BL6NJ_G0011497.1 mouse_genomes_project 16 16520530 16520819 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0044611.1 MGP_C57BL6NJ_G0023168.1 mouse_genomes_project 16 31918218 31992651 + MGP_C57BL6NJ_P0044611 Lmln protein_coding protein_coding MGP_C57BL6NJ_T0044612.1 MGP_C57BL6NJ_G0023168.1 mouse_genomes_project 16 31953941 31968735 + Lmln protein_coding retained_intron MGP_C57BL6NJ_T0044613.1 MGP_C57BL6NJ_G0023168.1 mouse_genomes_project 16 31980500 31988830 + Lmln protein_coding retained_intron MGP_C57BL6NJ_T0044614.1 MGP_C57BL6NJ_G0023168.1 mouse_genomes_project 16 31989183 31990525 + Lmln protein_coding processed_transcript MGP_C57BL6NJ_T0045317.1 MGP_C57BL6NJ_G0023371.1 mouse_genomes_project 16 78057574 78067513 + MGP_C57BL6NJ_P0045317 Rbm11 protein_coding protein_coding MGP_C57BL6NJ_T0045318.1 MGP_C57BL6NJ_G0023371.1 mouse_genomes_project 16 78057574 78066379 + MGP_C57BL6NJ_P0045318 Rbm11 protein_coding protein_coding MGP_C57BL6NJ_T0045319.1 MGP_C57BL6NJ_G0023371.1 mouse_genomes_project 16 78057621 78067509 + MGP_C57BL6NJ_P0045319 Rbm11 protein_coding protein_coding MGP_C57BL6NJ_T0007021.1 MGP_C57BL6NJ_G0005789.1 mouse_genomes_project 16 49315749 49365085 - 1700026J12Rik lincRNA lincRNA MGP_C57BL6NJ_T0007022.1 MGP_C57BL6NJ_G0005789.1 mouse_genomes_project 16 49315776 49365085 - 1700026J12Rik lincRNA lincRNA MGP_C57BL6NJ_T0010355.1 MGP_C57BL6NJ_G0008440.1 mouse_genomes_project 16 41922788 41922896 - Mir6540 miRNA miRNA MGP_C57BL6NJ_T0043655.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10819326 10850485 + MGP_C57BL6NJ_P0043655 Bfar protein_coding protein_coding MGP_C57BL6NJ_T0043657.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10819418 10846162 + MGP_C57BL6NJ_P0043657 Bfar protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0043658.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10819488 10850475 + MGP_C57BL6NJ_P0043658 Bfar protein_coding protein_coding MGP_C57BL6NJ_T0043659.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10819530 10833115 + Bfar protein_coding retained_intron MGP_C57BL6NJ_T0043660.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10832359 10835040 + Bfar protein_coding retained_intron MGP_C57BL6NJ_T0043661.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10832729 10835471 + Bfar protein_coding retained_intron MGP_C57BL6NJ_T0043662.1 MGP_C57BL6NJ_G0022947.1 mouse_genomes_project 16 10839463 10844379 + Bfar protein_coding retained_intron MGP_C57BL6NJ_T0043505.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5314100 5436231 + MGP_C57BL6NJ_P0043505 Abat protein_coding protein_coding MGP_C57BL6NJ_T0043506.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5314152 5417680 + MGP_C57BL6NJ_P0043506 Abat protein_coding protein_coding MGP_C57BL6NJ_T0043507.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5314154 5391206 + Abat protein_coding retained_intron MGP_C57BL6NJ_T0043508.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5314156 5434233 + MGP_C57BL6NJ_P0043508 Abat protein_coding protein_coding MGP_C57BL6NJ_T0043509.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5383419 5420262 + MGP_C57BL6NJ_P0043509 Abat protein_coding protein_coding MGP_C57BL6NJ_T0043510.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5394006 5417680 + MGP_C57BL6NJ_P0043510 Abat protein_coding protein_coding MGP_C57BL6NJ_T0043511.1 MGP_C57BL6NJ_G0022909.1 mouse_genomes_project 16 5427506 5433240 + Abat protein_coding processed_transcript MGP_C57BL6NJ_T0001080.1 MGP_C57BL6NJ_G0000989.1 mouse_genomes_project 16 390292 390660 - TEC TEC MGP_C57BL6NJ_T0001081.1 MGP_C57BL6NJ_G0000989.1 mouse_genomes_project 16 390324 390660 - TEC TEC MGP_C57BL6NJ_T0101321.1 MGP_C57BL6NJ_G0039367.1 mouse_genomes_project 16 21158076 21158215 + Gm24616 snoRNA snoRNA MGP_C57BL6NJ_T0044364.1 MGP_C57BL6NJ_G0023110.1 mouse_genomes_project 16 24724806 24751517 + MGP_C57BL6NJ_P0044364 Cldn16 protein_coding protein_coding MGP_C57BL6NJ_T0044365.1 MGP_C57BL6NJ_G0023110.1 mouse_genomes_project 16 24724927 24751515 + MGP_C57BL6NJ_P0044365 Cldn16 protein_coding protein_coding MGP_C57BL6NJ_T0044730.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36005284 36042060 - MGP_C57BL6NJ_P0044730 Slc15a2 protein_coding protein_coding MGP_C57BL6NJ_T0044731.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36006884 36041918 - MGP_C57BL6NJ_P0044731 Slc15a2 protein_coding protein_coding MGP_C57BL6NJ_T0044732.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36006884 36041890 - MGP_C57BL6NJ_P0044732 Slc15a2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0044733.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36007422 36009863 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044734.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36009562 36010512 - Slc15a2 protein_coding processed_transcript MGP_C57BL6NJ_T0044735.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36011002 36011809 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044736.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36012226 36017959 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044737.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36012273 36017769 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044738.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36016303 36017685 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044739.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36028402 36042038 - MGP_C57BL6NJ_P0044739 Slc15a2 protein_coding protein_coding MGP_C57BL6NJ_T0044740.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36028405 36042022 - MGP_C57BL6NJ_P0044740 Slc15a2 protein_coding protein_coding MGP_C57BL6NJ_T0044741.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36028599 36029807 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0044742.1 MGP_C57BL6NJ_G0023205.1 mouse_genomes_project 16 36038483 36039563 - Slc15a2 protein_coding retained_intron MGP_C57BL6NJ_T0010337.1 MGP_C57BL6NJ_G0008422.1 mouse_genomes_project 16 15819564 15819629 - Mir185 miRNA miRNA MGP_C57BL6NJ_T0044897.1 MGP_C57BL6NJ_G0023242.1 mouse_genomes_project 16 43446454 43531297 + MGP_C57BL6NJ_P0044897 Drd3 protein_coding protein_coding MGP_C57BL6NJ_T0101342.1 MGP_C57BL6NJ_G0039388.1 mouse_genomes_project 16 56683103 56683238 - Gm22422 snoRNA snoRNA MGP_C57BL6NJ_T0045521.1 MGP_C57BL6NJ_G0023452.1 mouse_genomes_project 16 95151298 95154504 - MGP_C57BL6NJ_P0045521 Gm9881 protein_coding protein_coding MGP_C57BL6NJ_T0101320.1 MGP_C57BL6NJ_G0039366.1 mouse_genomes_project 16 21156757 21156882 + Gm24201 snoRNA snoRNA MGP_C57BL6NJ_T0045121.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56656134 56677037 - Pcnp protein_coding processed_transcript MGP_C57BL6NJ_T0045122.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56656333 56677027 - MGP_C57BL6NJ_P0045122 Pcnp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045123.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56656366 56677057 - Pcnp protein_coding processed_transcript MGP_C57BL6NJ_T0045124.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56656521 56672019 - MGP_C57BL6NJ_P0045124 Pcnp protein_coding protein_coding MGP_C57BL6NJ_T0045125.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56656559 56677017 - MGP_C57BL6NJ_P0045125 Pcnp protein_coding protein_coding MGP_C57BL6NJ_T0045126.1 MGP_C57BL6NJ_G0023300.1 mouse_genomes_project 16 56657682 56677047 - MGP_C57BL6NJ_P0045126 Pcnp protein_coding protein_coding MGP_C57BL6NJ_T0099034.1 MGP_C57BL6NJ_G0037098.1 mouse_genomes_project 16 62501567 62501685 - n-R5s37 rRNA rRNA MGP_C57BL6NJ_T0043967.1 MGP_C57BL6NJ_G0023013.1 mouse_genomes_project 16 15343641 15345594 - MGP_C57BL6NJ_P0043967 Gsc2 protein_coding protein_coding MGP_C57BL6NJ_T0045277.1 MGP_C57BL6NJ_G0023358.1 mouse_genomes_project 16 66190346 66205100 - 4930453N24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0045278.1 MGP_C57BL6NJ_G0023358.1 mouse_genomes_project 16 66200579 66209795 - MGP_C57BL6NJ_P0045278 4930453N24Rik protein_coding protein_coding MGP_C57BL6NJ_T0044914.1 MGP_C57BL6NJ_G0023245.1 mouse_genomes_project 16 43676232 43690954 - MGP_C57BL6NJ_P0044914 Zdhhc23 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0044915.1 MGP_C57BL6NJ_G0023245.1 mouse_genomes_project 16 43680278 43690294 - MGP_C57BL6NJ_P0044915 Zdhhc23 protein_coding protein_coding MGP_C57BL6NJ_T0045667.1 MGP_C57BL6NJ_G0023483.1 mouse_genomes_project 16 98146262 98157083 - MGP_C57BL6NJ_P0045667 Cldn14 protein_coding protein_coding MGP_C57BL6NJ_T0045668.1 MGP_C57BL6NJ_G0023483.1 mouse_genomes_project 16 98146262 98156833 - MGP_C57BL6NJ_P0045668 Cldn14 protein_coding protein_coding MGP_C57BL6NJ_T0045669.1 MGP_C57BL6NJ_G0023483.1 mouse_genomes_project 16 98146263 98239398 - MGP_C57BL6NJ_P0045669 Cldn14 protein_coding protein_coding MGP_C57BL6NJ_T0045670.1 MGP_C57BL6NJ_G0023483.1 mouse_genomes_project 16 98146980 98156833 - Cldn14 protein_coding processed_transcript MGP_C57BL6NJ_T0045671.1 MGP_C57BL6NJ_G0023483.1 mouse_genomes_project 16 98147038 98157083 - Cldn14 protein_coding processed_transcript MGP_C57BL6NJ_T0099354.1 MGP_C57BL6NJ_G0037413.1 mouse_genomes_project 16 29535339 29539465 - Gm15742 sense_intronic sense_intronic MGP_C57BL6NJ_T0043874.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14875335 14894076 + MGP_C57BL6NJ_P0043874 Aifm3 protein_coding protein_coding MGP_C57BL6NJ_T0043875.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14875387 14894076 + MGP_C57BL6NJ_P0043875 Aifm3 protein_coding protein_coding MGP_C57BL6NJ_T0043876.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14875571 14891997 + Aifm3 protein_coding retained_intron MGP_C57BL6NJ_T0043877.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14886267 14894072 + Aifm3 protein_coding retained_intron MGP_C57BL6NJ_T0043878.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14888832 14890293 + Aifm3 protein_coding retained_intron MGP_C57BL6NJ_T0043879.1 MGP_C57BL6NJ_G0022996.1 mouse_genomes_project 16 14889482 14892515 + Aifm3 protein_coding retained_intron MGP_C57BL6NJ_T0045816.1 MGP_C57BL6NJ_G0023509.1 mouse_genomes_project 16 102100254 102154023 - MGP_C57BL6NJ_P0045816 Tmprss2 protein_coding protein_coding MGP_C57BL6NJ_T0010340.1 MGP_C57BL6NJ_G0008425.1 mouse_genomes_project 16 17505983 17506085 - Gm27883 miRNA miRNA MGP_C57BL6NJ_T0044294.1 MGP_C57BL6NJ_G0023089.1 mouse_genomes_project 16 20825101 20839764 + MGP_C57BL6NJ_P0044294 Dnajb11 protein_coding protein_coding MGP_C57BL6NJ_T0044295.1 MGP_C57BL6NJ_G0023089.1 mouse_genomes_project 16 20825101 20839687 + MGP_C57BL6NJ_P0044295 Dnajb11 protein_coding protein_coding MGP_C57BL6NJ_T0044296.1 MGP_C57BL6NJ_G0023089.1 mouse_genomes_project 16 20825101 20846933 + MGP_C57BL6NJ_P0044296 Dnajb11 protein_coding protein_coding MGP_C57BL6NJ_T0044297.1 MGP_C57BL6NJ_G0023089.1 mouse_genomes_project 16 20825162 20839403 + Dnajb11 protein_coding processed_transcript MGP_C57BL6NJ_T0044298.1 MGP_C57BL6NJ_G0023089.1 mouse_genomes_project 16 20836725 20839605 + Dnajb11 protein_coding processed_transcript MGP_C57BL6NJ_T0102889.1 MGP_C57BL6NJ_G0040683.1 mouse_genomes_project 16 59810288 59811120 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007035.1 MGP_C57BL6NJ_G0005797.1 mouse_genomes_project 16 71745788 71750035 - Gm43265 lincRNA lincRNA MGP_C57BL6NJ_T0003846.1 MGP_C57BL6NJ_G0003465.1 mouse_genomes_project 16 96362140 96365893 - 1700048M11Rik antisense antisense MGP_C57BL6NJ_T0010324.1 MGP_C57BL6NJ_G0008409.1 mouse_genomes_project 16 7965413 7965539 + Gm26268 miRNA miRNA MGP_C57BL6NJ_T0048036.1 MGP_C57BL6NJ_G0024082.1 mouse_genomes_project 17 38558434 38560646 - MGP_C57BL6NJ_P0048036 H2-M1 protein_coding protein_coding MGP_C57BL6NJ_T0046175.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21213953 21233159 + MGP_C57BL6NJ_P0046175 Zfp229 protein_coding protein_coding MGP_C57BL6NJ_T0046176.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21216838 21219240 + Zfp229 protein_coding processed_transcript MGP_C57BL6NJ_T0046177.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21216871 21218076 + Zfp229 protein_coding processed_transcript MGP_C57BL6NJ_T0046178.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21216882 21237066 + MGP_C57BL6NJ_P0046178 Zfp229 protein_coding protein_coding MGP_C57BL6NJ_T0046179.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21216882 21256319 + MGP_C57BL6NJ_P0046179 Zfp229 protein_coding protein_coding MGP_C57BL6NJ_T0046180.1 MGP_C57BL6NJ_G0023644.1 mouse_genomes_project 17 21219070 21237067 + MGP_C57BL6NJ_P0046180 Zfp229 protein_coding protein_coding MGP_C57BL6NJ_T0048689.1 MGP_C57BL6NJ_G0024324.1 mouse_genomes_project 17 60198955 60206374 + MGP_C57BL6NJ_P0048689 protein_coding protein_coding MGP_C57BL6NJ_T0013598.1 MGP_C57BL6NJ_G0011643.1 mouse_genomes_project 17 57696344 57697471 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046191.1 MGP_C57BL6NJ_G0023648.1 mouse_genomes_project 17 21528599 21529391 - MGP_C57BL6NJ_P0046191 Gm9772 protein_coding protein_coding MGP_C57BL6NJ_T0049138.1 MGP_C57BL6NJ_G0024486.1 mouse_genomes_project 17 90951430 90976891 - MGP_C57BL6NJ_P0049138 Abcg5 protein_coding protein_coding MGP_C57BL6NJ_T0049139.1 MGP_C57BL6NJ_G0024486.1 mouse_genomes_project 17 90951684 90976082 - MGP_C57BL6NJ_P0049139 Abcg5 protein_coding protein_coding MGP_C57BL6NJ_T0049140.1 MGP_C57BL6NJ_G0024486.1 mouse_genomes_project 17 90963833 90968285 - Abcg5 protein_coding processed_transcript MGP_C57BL6NJ_T0049141.1 MGP_C57BL6NJ_G0024486.1 mouse_genomes_project 17 90964311 90970373 - Abcg5 protein_coding retained_intron MGP_C57BL6NJ_T0048537.1 MGP_C57BL6NJ_G0024266.1 mouse_genomes_project 17 51329643 51331192 - MGP_C57BL6NJ_P0048537 1700122O11Rik protein_coding protein_coding MGP_C57BL6NJ_T0013534.1 MGP_C57BL6NJ_G0011579.1 mouse_genomes_project 17 14025970 14026228 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047235.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321668 33334619 - MGP_C57BL6NJ_P0047235 Rasal3 protein_coding protein_coding MGP_C57BL6NJ_T0047236.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321670 33334595 - MGP_C57BL6NJ_P0047236 Rasal3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047237.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321679 33334604 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0047238.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321926 33322518 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0047239.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321933 33334617 - MGP_C57BL6NJ_P0047239 Rasal3 protein_coding protein_coding MGP_C57BL6NJ_T0047240.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33321982 33334573 - MGP_C57BL6NJ_P0047240 Rasal3 protein_coding protein_coding MGP_C57BL6NJ_T0047241.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33323648 33324736 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0047242.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33324932 33326381 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0047243.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33326576 33327719 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0047244.1 MGP_C57BL6NJ_G0023909.1 mouse_genomes_project 17 33329809 33334617 - Rasal3 protein_coding retained_intron MGP_C57BL6NJ_T0018045.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50323423 50533088 + Trerf1 processed_transcript retained_intron MGP_C57BL6NJ_T0018046.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50323450 50563968 + Trerf1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018047.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50323450 50568651 + Trerf1 processed_transcript processed_transcript MGP_C57BL6NJ_T0018048.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50323724 50522349 + Trerf1 processed_transcript retained_intron MGP_C57BL6NJ_T0018049.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50405344 50522349 + Trerf1 processed_transcript retained_intron MGP_C57BL6NJ_T0018050.1 MGP_C57BL6NJ_G0015745.1 mouse_genomes_project 17 50495754 50563973 + Trerf1 processed_transcript processed_transcript MGP_C57BL6NJ_T0048424.1 MGP_C57BL6NJ_G0024235.1 mouse_genomes_project 17 49861525 49862663 - Gnmt protein_coding retained_intron MGP_C57BL6NJ_T0048425.1 MGP_C57BL6NJ_G0024235.1 mouse_genomes_project 17 49861525 49864955 - MGP_C57BL6NJ_P0048425 Gnmt protein_coding protein_coding MGP_C57BL6NJ_T0046207.1 MGP_C57BL6NJ_G0023657.1 mouse_genomes_project 17 22380466 22380637 + MGP_C57BL6NJ_P0046207 Gm9805 protein_coding protein_coding MGP_C57BL6NJ_T0003940.1 MGP_C57BL6NJ_G0003531.1 mouse_genomes_project 17 91997758 92000287 - Gm28528 antisense antisense MGP_C57BL6NJ_T0048649.1 MGP_C57BL6NJ_G0024304.1 mouse_genomes_project 17 59749290 59766960 - MGP_C57BL6NJ_P0048649 Zfp119a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048650.1 MGP_C57BL6NJ_G0024304.1 mouse_genomes_project 17 59749297 59847349 - MGP_C57BL6NJ_P0048650 Zfp119a protein_coding protein_coding MGP_C57BL6NJ_T0100105.1 MGP_C57BL6NJ_G0038151.1 mouse_genomes_project 17 95076844 95076951 - Gm23947 snRNA snRNA MGP_C57BL6NJ_T0048143.1 MGP_C57BL6NJ_G0024133.1 mouse_genomes_project 17 39928816 39929914 + MGP_C57BL6NJ_P0048143 protein_coding protein_coding MGP_C57BL6NJ_T0013615.1 MGP_C57BL6NJ_G0011660.1 mouse_genomes_project 17 78481068 78481738 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013533.1 MGP_C57BL6NJ_G0011578.1 mouse_genomes_project 17 13353670 13354409 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046360.1 MGP_C57BL6NJ_G0023706.1 mouse_genomes_project 17 24424463 24450331 + MGP_C57BL6NJ_P0046360 Rnps1 protein_coding protein_coding MGP_C57BL6NJ_T0047470.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35392962 35403246 - MGP_C57BL6NJ_P0047470 Brd2 protein_coding protein_coding MGP_C57BL6NJ_T0047471.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35392969 35401339 - MGP_C57BL6NJ_P0047471 Brd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047472.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35393623 35394672 - Brd2 protein_coding retained_intron MGP_C57BL6NJ_T0047473.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35394698 35395891 - Brd2 protein_coding retained_intron MGP_C57BL6NJ_T0047474.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35394700 35395917 - MGP_C57BL6NJ_P0047474 Brd2 protein_coding protein_coding MGP_C57BL6NJ_T0047475.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35394735 35396016 - MGP_C57BL6NJ_P0047475 Brd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047476.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35395024 35402915 - MGP_C57BL6NJ_P0047476 Brd2 protein_coding protein_coding MGP_C57BL6NJ_T0047477.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35395703 35396410 - Brd2 protein_coding retained_intron MGP_C57BL6NJ_T0047478.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35400455 35402877 - Brd2 protein_coding processed_transcript MGP_C57BL6NJ_T0047479.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35400485 35403546 - Brd2 protein_coding processed_transcript MGP_C57BL6NJ_T0047480.1 MGP_C57BL6NJ_G0023964.1 mouse_genomes_project 17 35400794 35403561 - Brd2 protein_coding processed_transcript MGP_C57BL6NJ_T0007117.1 MGP_C57BL6NJ_G0005860.1 mouse_genomes_project 17 39877880 39879740 + Gm20524 lincRNA lincRNA MGP_C57BL6NJ_T0013602.1 MGP_C57BL6NJ_G0011647.1 mouse_genomes_project 17 59919405 59919667 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003855.1 MGP_C57BL6NJ_G0003472.1 mouse_genomes_project 17 4341433 4585093 + antisense antisense MGP_C57BL6NJ_T0010390.1 MGP_C57BL6NJ_G0008475.1 mouse_genomes_project 17 16623923 16624016 + Mirlet7e miRNA miRNA MGP_C57BL6NJ_T0100099.1 MGP_C57BL6NJ_G0038145.1 mouse_genomes_project 17 86034025 86034131 + Gm23125 snRNA snRNA MGP_C57BL6NJ_T0049106.1 MGP_C57BL6NJ_G0024471.1 mouse_genomes_project 17 86941000 87003783 + MGP_C57BL6NJ_P0049106 Tmem178 protein_coding protein_coding MGP_C57BL6NJ_T0048179.1 MGP_C57BL6NJ_G0024162.1 mouse_genomes_project 17 43290084 43297872 + MGP_C57BL6NJ_P0048179 Esp3 protein_coding protein_coding MGP_C57BL6NJ_T0048220.1 MGP_C57BL6NJ_G0024185.1 mouse_genomes_project 17 46697093 46967925 + MGP_C57BL6NJ_P0048220 Rcan2 protein_coding protein_coding MGP_C57BL6NJ_T0048221.1 MGP_C57BL6NJ_G0024185.1 mouse_genomes_project 17 46864888 46965806 + MGP_C57BL6NJ_P0048221 Rcan2 protein_coding protein_coding MGP_C57BL6NJ_T0048222.1 MGP_C57BL6NJ_G0024185.1 mouse_genomes_project 17 46866313 46967925 + MGP_C57BL6NJ_P0048222 Rcan2 protein_coding protein_coding MGP_C57BL6NJ_T0046053.1 MGP_C57BL6NJ_G0023580.1 mouse_genomes_project 17 13453522 13471946 + MGP_C57BL6NJ_P0046053 Ermard protein_coding protein_coding MGP_C57BL6NJ_T0046054.1 MGP_C57BL6NJ_G0023580.1 mouse_genomes_project 17 13453552 13494038 + MGP_C57BL6NJ_P0046054 Ermard protein_coding protein_coding MGP_C57BL6NJ_T0046055.1 MGP_C57BL6NJ_G0023580.1 mouse_genomes_project 17 13453552 13471449 + MGP_C57BL6NJ_P0046055 Ermard protein_coding protein_coding MGP_C57BL6NJ_T0046056.1 MGP_C57BL6NJ_G0023580.1 mouse_genomes_project 17 13463228 13493572 + MGP_C57BL6NJ_P0046056 Ermard protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046057.1 MGP_C57BL6NJ_G0023580.1 mouse_genomes_project 17 13470760 13494029 + MGP_C57BL6NJ_P0046057 Ermard protein_coding protein_coding MGP_C57BL6NJ_T0048883.1 MGP_C57BL6NJ_G0024397.1 mouse_genomes_project 17 72603291 72733804 + MGP_C57BL6NJ_P0048883 Lama1 protein_coding protein_coding MGP_C57BL6NJ_T0048642.1 MGP_C57BL6NJ_G0024300.1 mouse_genomes_project 17 59298266 59353546 + MGP_C57BL6NJ_P0048642 St6gal2 protein_coding protein_coding MGP_C57BL6NJ_T0048643.1 MGP_C57BL6NJ_G0024300.1 mouse_genomes_project 17 59298273 59368567 + MGP_C57BL6NJ_P0048643 St6gal2 protein_coding protein_coding MGP_C57BL6NJ_T0048644.1 MGP_C57BL6NJ_G0024300.1 mouse_genomes_project 17 59298434 59389113 + MGP_C57BL6NJ_P0048644 St6gal2 protein_coding protein_coding MGP_C57BL6NJ_T0048645.1 MGP_C57BL6NJ_G0024300.1 mouse_genomes_project 17 59299128 59352882 + St6gal2 protein_coding processed_transcript MGP_C57BL6NJ_T0048166.1 MGP_C57BL6NJ_G0024149.1 mouse_genomes_project 17 41273679 41274387 - MGP_C57BL6NJ_P0048166 Gm21903 protein_coding protein_coding MGP_C57BL6NJ_T0048558.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51787039 51811140 - MGP_C57BL6NJ_P0048558 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048559.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51787043 51811281 - MGP_C57BL6NJ_P0048559 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048560.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51787050 51811140 - MGP_C57BL6NJ_P0048560 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048561.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51789159 51800699 - MGP_C57BL6NJ_P0048561 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048562.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51789235 51811105 - MGP_C57BL6NJ_P0048562 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048563.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51789263 51793378 - MGP_C57BL6NJ_P0048563 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048564.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51789378 51793614 - MGP_C57BL6NJ_P0048564 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048565.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51791034 51792300 - Nfya protein_coding retained_intron MGP_C57BL6NJ_T0048566.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51792170 51799193 - MGP_C57BL6NJ_P0048566 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048567.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51792198 51811116 - MGP_C57BL6NJ_P0048567 Nfya protein_coding protein_coding MGP_C57BL6NJ_T0048568.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51793372 51796209 - Nfya protein_coding retained_intron MGP_C57BL6NJ_T0048569.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51795517 51811063 - Nfya protein_coding retained_intron MGP_C57BL6NJ_T0048570.1 MGP_C57BL6NJ_G0024276.1 mouse_genomes_project 17 51798081 51811125 - Nfya protein_coding retained_intron MGP_C57BL6NJ_T0003888.1 MGP_C57BL6NJ_G0003491.1 mouse_genomes_project 17 29452400 29456754 - Pnpla1os antisense antisense MGP_C57BL6NJ_T0011681.1 MGP_C57BL6NJ_G0009766.1 mouse_genomes_project 17 16571940 16572226 + Gm23837 misc_RNA misc_RNA MGP_C57BL6NJ_T0102955.1 MGP_C57BL6NJ_G0040749.1 mouse_genomes_project 17 38437723 38437949 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007072.1 MGP_C57BL6NJ_G0005822.1 mouse_genomes_project 17 16152736 16158009 - Gm26873 lincRNA lincRNA MGP_C57BL6NJ_T0049042.1 MGP_C57BL6NJ_G0024439.1 mouse_genomes_project 17 81050434 81065291 - MGP_C57BL6NJ_P0049042 Fam98a protein_coding protein_coding MGP_C57BL6NJ_T0049043.1 MGP_C57BL6NJ_G0024439.1 mouse_genomes_project 17 81052379 81053921 - Fam98a protein_coding retained_intron MGP_C57BL6NJ_T0049044.1 MGP_C57BL6NJ_G0024439.1 mouse_genomes_project 17 81057815 81065141 - Fam98a protein_coding retained_intron MGP_C57BL6NJ_T0046015.1 MGP_C57BL6NJ_G0023569.1 mouse_genomes_project 17 11882888 11888093 + MGP_C57BL6NJ_P0046015 protein_coding protein_coding MGP_C57BL6NJ_T0102949.1 MGP_C57BL6NJ_G0040743.1 mouse_genomes_project 17 38027761 38030676 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007115.1 MGP_C57BL6NJ_G0005858.1 mouse_genomes_project 17 38068726 38074330 + Gm20546 lincRNA lincRNA MGP_C57BL6NJ_T0013552.1 MGP_C57BL6NJ_G0011597.1 mouse_genomes_project 17 36415072 36415457 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102197.1 MGP_C57BL6NJ_G0040209.1 mouse_genomes_project 17 38287607 38288223 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0046158.1 MGP_C57BL6NJ_G0023630.1 mouse_genomes_project 17 20266133 20289372 + MGP_C57BL6NJ_P0046158 Zfp160 protein_coding protein_coding MGP_C57BL6NJ_T0003889.1 MGP_C57BL6NJ_G0003492.1 mouse_genomes_project 17 29511317 29512824 + 1700030A11Rik antisense antisense MGP_C57BL6NJ_T0046135.1 MGP_C57BL6NJ_G0023613.1 mouse_genomes_project 17 19432386 19460842 - MGP_C57BL6NJ_P0046135 Vmn2r105 protein_coding protein_coding MGP_C57BL6NJ_T0047734.1 MGP_C57BL6NJ_G0024017.1 mouse_genomes_project 17 36542147 36546384 + MGP_C57BL6NJ_P0047734 Ly6g6c protein_coding protein_coding MGP_C57BL6NJ_T0047735.1 MGP_C57BL6NJ_G0024017.1 mouse_genomes_project 17 36544084 36546809 + MGP_C57BL6NJ_P0047735 Ly6g6c protein_coding protein_coding MGP_C57BL6NJ_T0047736.1 MGP_C57BL6NJ_G0024017.1 mouse_genomes_project 17 36544149 36546293 + MGP_C57BL6NJ_P0047736 Ly6g6c protein_coding protein_coding MGP_C57BL6NJ_T0102899.1 MGP_C57BL6NJ_G0040693.1 mouse_genomes_project 17 18385807 18413666 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045837.1 MGP_C57BL6NJ_G0023517.1 mouse_genomes_project 17 438446 641976 + MGP_C57BL6NJ_P0045837 Tiam2 protein_coding protein_coding MGP_C57BL6NJ_T0045838.1 MGP_C57BL6NJ_G0023517.1 mouse_genomes_project 17 514920 641976 + MGP_C57BL6NJ_P0045838 Tiam2 protein_coding protein_coding MGP_C57BL6NJ_T0013558.1 MGP_C57BL6NJ_G0011603.1 mouse_genomes_project 17 37939505 37940049 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046993.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29267686 29328555 + MGP_C57BL6NJ_P0046993 Mapk14 protein_coding protein_coding MGP_C57BL6NJ_T0046994.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29267686 29321315 + MGP_C57BL6NJ_P0046994 Mapk14 protein_coding protein_coding MGP_C57BL6NJ_T0046995.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29267686 29328555 + MGP_C57BL6NJ_P0046995 Mapk14 protein_coding protein_coding MGP_C57BL6NJ_T0046996.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29267784 29304948 + MGP_C57BL6NJ_P0046996 Mapk14 protein_coding protein_coding MGP_C57BL6NJ_T0046997.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29268084 29328560 + MGP_C57BL6NJ_P0046997 Mapk14 protein_coding protein_coding MGP_C57BL6NJ_T0046998.1 MGP_C57BL6NJ_G0023853.1 mouse_genomes_project 17 29321769 29326508 + Mapk14 protein_coding retained_intron MGP_C57BL6NJ_T0013544.1 MGP_C57BL6NJ_G0011589.1 mouse_genomes_project 17 27942442 27942785 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047287.1 MGP_C57BL6NJ_G0023927.1 mouse_genomes_project 17 34110635 34129971 + MGP_C57BL6NJ_P0047287 Zfp563 protein_coding protein_coding MGP_C57BL6NJ_T0047288.1 MGP_C57BL6NJ_G0023927.1 mouse_genomes_project 17 34110889 34128492 + MGP_C57BL6NJ_P0047288 Zfp563 protein_coding protein_coding MGP_C57BL6NJ_T0047289.1 MGP_C57BL6NJ_G0023927.1 mouse_genomes_project 17 34113783 34128826 + MGP_C57BL6NJ_P0047289 Zfp563 protein_coding protein_coding MGP_C57BL6NJ_T0048191.1 MGP_C57BL6NJ_G0024169.1 mouse_genomes_project 17 43614210 43640852 + MGP_C57BL6NJ_P0048191 Mut protein_coding protein_coding MGP_C57BL6NJ_T0048792.1 MGP_C57BL6NJ_G0024367.1 mouse_genomes_project 17 61352793 61406460 + MGP_C57BL6NJ_P0048792 Vav1 protein_coding protein_coding MGP_C57BL6NJ_T0048793.1 MGP_C57BL6NJ_G0024367.1 mouse_genomes_project 17 61352793 61406541 + MGP_C57BL6NJ_P0048793 Vav1 protein_coding protein_coding MGP_C57BL6NJ_T0048794.1 MGP_C57BL6NJ_G0024367.1 mouse_genomes_project 17 61352820 61406465 + MGP_C57BL6NJ_P0048794 Vav1 protein_coding protein_coding MGP_C57BL6NJ_T0048795.1 MGP_C57BL6NJ_G0024367.1 mouse_genomes_project 17 61378885 61382154 + Vav1 protein_coding retained_intron MGP_C57BL6NJ_T0048796.1 MGP_C57BL6NJ_G0024367.1 mouse_genomes_project 17 61388804 61406463 + Vav1 protein_coding processed_transcript MGP_C57BL6NJ_T0102950.1 MGP_C57BL6NJ_G0040744.1 mouse_genomes_project 17 38054773 38054879 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048693.1 MGP_C57BL6NJ_G0024328.1 mouse_genomes_project 17 60242065 60248239 - MGP_C57BL6NJ_P0048693 Arrdc5 protein_coding protein_coding MGP_C57BL6NJ_T0001122.1 MGP_C57BL6NJ_G0001028.1 mouse_genomes_project 17 55381647 55384821 - TEC TEC MGP_C57BL6NJ_T0102974.1 MGP_C57BL6NJ_G0040768.1 mouse_genomes_project 17 39418759 39419686 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018011.1 MGP_C57BL6NJ_G0015731.1 mouse_genomes_project 17 19986140 19987167 + Vmn1r227 processed_transcript pseudogene MGP_C57BL6NJ_T0001129.1 MGP_C57BL6NJ_G0001035.1 mouse_genomes_project 17 76531589 76532987 - TEC TEC MGP_C57BL6NJ_T0047136.1 MGP_C57BL6NJ_G0023889.1 mouse_genomes_project 17 31987364 32005842 - MGP_C57BL6NJ_P0047136 Tmprss3 protein_coding protein_coding MGP_C57BL6NJ_T0047137.1 MGP_C57BL6NJ_G0023889.1 mouse_genomes_project 17 31987364 32007068 - MGP_C57BL6NJ_P0047137 Tmprss3 protein_coding protein_coding MGP_C57BL6NJ_T0048189.1 MGP_C57BL6NJ_G0024168.1 mouse_genomes_project 17 43602488 43614573 - MGP_C57BL6NJ_P0048189 Cenpq protein_coding protein_coding MGP_C57BL6NJ_T0048190.1 MGP_C57BL6NJ_G0024168.1 mouse_genomes_project 17 43605246 43606730 - Cenpq protein_coding processed_transcript MGP_C57BL6NJ_T0003853.1 MGP_C57BL6NJ_G0003471.1 mouse_genomes_project 17 2651727 2682465 + Gm29050 antisense antisense MGP_C57BL6NJ_T0003854.1 MGP_C57BL6NJ_G0003471.1 mouse_genomes_project 17 2666979 2684721 + Gm29050 antisense antisense MGP_C57BL6NJ_T0003894.1 MGP_C57BL6NJ_G0003495.1 mouse_genomes_project 17 31959328 31968065 + Gm15318 antisense antisense MGP_C57BL6NJ_T0003895.1 MGP_C57BL6NJ_G0003495.1 mouse_genomes_project 17 31959328 31969629 + Gm15318 antisense antisense MGP_C57BL6NJ_T0003896.1 MGP_C57BL6NJ_G0003495.1 mouse_genomes_project 17 31959328 31968900 + Gm15318 antisense antisense MGP_C57BL6NJ_T0046973.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 28931288 29024971 - MGP_C57BL6NJ_P0046973 Fkbp5 protein_coding protein_coding MGP_C57BL6NJ_T0046974.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 28931290 29060741 - MGP_C57BL6NJ_P0046974 Fkbp5 protein_coding protein_coding MGP_C57BL6NJ_T0046975.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 28931298 29026833 - MGP_C57BL6NJ_P0046975 Fkbp5 protein_coding protein_coding MGP_C57BL6NJ_T0046976.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 28934891 28964597 - Fkbp5 protein_coding processed_transcript MGP_C57BL6NJ_T0046977.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 28951934 28977690 - MGP_C57BL6NJ_P0046977 Fkbp5 protein_coding protein_coding MGP_C57BL6NJ_T0046978.1 MGP_C57BL6NJ_G0023846.1 mouse_genomes_project 17 29037434 29047505 - Fkbp5 protein_coding retained_intron MGP_C57BL6NJ_T0047294.1 MGP_C57BL6NJ_G0023931.1 mouse_genomes_project 17 34320845 34336202 - MGP_C57BL6NJ_P0047294 Zfp955b protein_coding protein_coding MGP_C57BL6NJ_T0046647.1 MGP_C57BL6NJ_G0023779.1 mouse_genomes_project 17 25981025 25983751 - MGP_C57BL6NJ_P0046647 Stub1 protein_coding protein_coding MGP_C57BL6NJ_T0007085.1 MGP_C57BL6NJ_G0005833.1 mouse_genomes_project 17 27569242 27571282 + Gm26724 lincRNA lincRNA MGP_C57BL6NJ_T0010404.1 MGP_C57BL6NJ_G0008489.1 mouse_genomes_project 17 27265798 27265866 + Mir6968 miRNA miRNA MGP_C57BL6NJ_T0048940.1 MGP_C57BL6NJ_G0024409.1 mouse_genomes_project 17 76113452 76234860 + MGP_C57BL6NJ_P0048940 Myom1 protein_coding protein_coding MGP_C57BL6NJ_T0048941.1 MGP_C57BL6NJ_G0024409.1 mouse_genomes_project 17 76113499 76234861 + MGP_C57BL6NJ_P0048941 Myom1 protein_coding protein_coding MGP_C57BL6NJ_T0048942.1 MGP_C57BL6NJ_G0024409.1 mouse_genomes_project 17 76113499 76234861 + MGP_C57BL6NJ_P0048942 Myom1 protein_coding protein_coding MGP_C57BL6NJ_T0101363.1 MGP_C57BL6NJ_G0039409.1 mouse_genomes_project 17 10334555 10334695 + Gm24794 snoRNA snoRNA MGP_C57BL6NJ_T0010410.1 MGP_C57BL6NJ_G0008495.1 mouse_genomes_project 17 27754440 27754499 + Mir7218 miRNA miRNA MGP_C57BL6NJ_T0049212.1 MGP_C57BL6NJ_G0024513.1 mouse_genomes_project 17 94596081 94617263 + MGP_C57BL6NJ_P0049212 Msh6 protein_coding protein_coding MGP_C57BL6NJ_T0047209.1 MGP_C57BL6NJ_G0023904.1 mouse_genomes_project 17 33101949 33107360 - MGP_C57BL6NJ_P0047209 Ephx3 protein_coding protein_coding MGP_C57BL6NJ_T0047210.1 MGP_C57BL6NJ_G0023904.1 mouse_genomes_project 17 33102650 33107446 - MGP_C57BL6NJ_P0047210 Ephx3 protein_coding protein_coding MGP_C57BL6NJ_T0047422.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236549 35247929 - MGP_C57BL6NJ_P0047422 H2-K1 protein_coding protein_coding MGP_C57BL6NJ_T0047423.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236550 35247923 - H2-K1 protein_coding retained_intron MGP_C57BL6NJ_T0047424.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236571 35238288 - H2-K1 protein_coding retained_intron MGP_C57BL6NJ_T0047425.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236585 35247973 - MGP_C57BL6NJ_P0047425 H2-K1 protein_coding protein_coding MGP_C57BL6NJ_T0047426.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236881 35237690 - H2-K1 protein_coding retained_intron MGP_C57BL6NJ_T0047427.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35236989 35247897 - MGP_C57BL6NJ_P0047427 H2-K1 protein_coding protein_coding MGP_C57BL6NJ_T0047428.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35237124 35238314 - H2-K1 protein_coding retained_intron MGP_C57BL6NJ_T0047430.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35237895 35247900 - MGP_C57BL6NJ_P0047430 H2-K1 protein_coding protein_coding MGP_C57BL6NJ_T0047431.1 MGP_C57BL6NJ_G0023956.1 mouse_genomes_project 17 35238041 35247114 - H2-K1 protein_coding processed_transcript MGP_C57BL6NJ_T0048636.1 MGP_C57BL6NJ_G0024296.1 mouse_genomes_project 17 57383751 57399587 - MGP_C57BL6NJ_P0048636 Sgol1 protein_coding protein_coding MGP_C57BL6NJ_T0048637.1 MGP_C57BL6NJ_G0024296.1 mouse_genomes_project 17 57397813 57399540 - Sgol1 protein_coding processed_transcript MGP_C57BL6NJ_T0048638.1 MGP_C57BL6NJ_G0024296.1 mouse_genomes_project 17 57397960 57399532 - Sgol1 protein_coding processed_transcript MGP_C57BL6NJ_T0001130.1 MGP_C57BL6NJ_G0001036.1 mouse_genomes_project 17 85699361 85717363 - TEC TEC MGP_C57BL6NJ_T0102915.1 MGP_C57BL6NJ_G0040709.1 mouse_genomes_project 17 20708392 20709128 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048744.1 MGP_C57BL6NJ_G0024338.1 mouse_genomes_project 17 60589516 60634589 + MGP_C57BL6NJ_P0048744 Catsperd protein_coding protein_coding MGP_C57BL6NJ_T0100069.1 MGP_C57BL6NJ_G0038115.1 mouse_genomes_project 17 14322098 14322205 - Gm25598 snRNA snRNA MGP_C57BL6NJ_T0007164.1 MGP_C57BL6NJ_G0005891.1 mouse_genomes_project 17 98462372 98501354 + Gm15404 lincRNA lincRNA MGP_C57BL6NJ_T0046099.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624290 16626005 + Spaca6 protein_coding processed_transcript MGP_C57BL6NJ_T0046100.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624464 16625638 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046101.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624575 16632643 + MGP_C57BL6NJ_P0046101 Spaca6 protein_coding protein_coding MGP_C57BL6NJ_T0046102.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624635 16636581 + MGP_C57BL6NJ_P0046102 Spaca6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046103.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624751 16632081 + Spaca6 protein_coding processed_transcript MGP_C57BL6NJ_T0046104.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16624751 16632081 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046105.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16625015 16631295 + MGP_C57BL6NJ_P0046105 Spaca6 protein_coding protein_coding MGP_C57BL6NJ_T0046106.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16625606 16629725 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046107.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16626523 16630597 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046108.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16629520 16632094 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046109.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16631075 16632643 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046110.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16631265 16632639 + MGP_C57BL6NJ_P0046110 Spaca6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046111.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16631852 16632643 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0046112.1 MGP_C57BL6NJ_G0023592.1 mouse_genomes_project 17 16632143 16632643 + Spaca6 protein_coding retained_intron MGP_C57BL6NJ_T0045875.1 MGP_C57BL6NJ_G0023528.1 mouse_genomes_project 17 3404982 3412972 + MGP_C57BL6NJ_P0045875 Gtf2h5 protein_coding protein_coding MGP_C57BL6NJ_T0045876.1 MGP_C57BL6NJ_G0023528.1 mouse_genomes_project 17 3405033 3407536 + Gtf2h5 protein_coding retained_intron MGP_C57BL6NJ_T0045877.1 MGP_C57BL6NJ_G0023528.1 mouse_genomes_project 17 3405126 3411587 + MGP_C57BL6NJ_P0045877 Gtf2h5 protein_coding protein_coding MGP_C57BL6NJ_T0102919.1 MGP_C57BL6NJ_G0040713.1 mouse_genomes_project 17 26501155 26501854 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048139.1 MGP_C57BL6NJ_G0024129.1 mouse_genomes_project 17 39873281 39874222 + MGP_C57BL6NJ_P0048139 Olfr123 protein_coding protein_coding MGP_C57BL6NJ_T0047284.1 MGP_C57BL6NJ_G0023925.1 mouse_genomes_project 17 34031281 34049467 - MGP_C57BL6NJ_P0047284 Zfp763 protein_coding protein_coding MGP_C57BL6NJ_T0047285.1 MGP_C57BL6NJ_G0023925.1 mouse_genomes_project 17 34034177 34049233 - Zfp763 protein_coding processed_transcript MGP_C57BL6NJ_T0048177.1 MGP_C57BL6NJ_G0024160.1 mouse_genomes_project 17 43221197 43241433 + MGP_C57BL6NJ_P0048177 Gm44501 protein_coding protein_coding MGP_C57BL6NJ_T0048133.1 MGP_C57BL6NJ_G0024124.1 mouse_genomes_project 17 39720318 39721284 + MGP_C57BL6NJ_P0048133 Olfr118 protein_coding protein_coding MGP_C57BL6NJ_T0010422.1 MGP_C57BL6NJ_G0008507.1 mouse_genomes_project 17 36689344 36689422 + Mir6973a miRNA miRNA MGP_C57BL6NJ_T0101379.1 MGP_C57BL6NJ_G0039425.1 mouse_genomes_project 17 58462806 58462943 + Gm26291 snoRNA snoRNA MGP_C57BL6NJ_T0013579.1 MGP_C57BL6NJ_G0011624.1 mouse_genomes_project 17 40030300 40030672 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047715.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503803 36505067 - Msh5 protein_coding processed_transcript MGP_C57BL6NJ_T0047716.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503803 36522708 - MGP_C57BL6NJ_P0047716 Msh5 protein_coding protein_coding MGP_C57BL6NJ_T0047717.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503803 36522839 - MGP_C57BL6NJ_P0047717 Msh5 protein_coding protein_coding MGP_C57BL6NJ_T0047718.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503807 36508490 - MGP_C57BL6NJ_P0047718 Msh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047719.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503881 36522628 - MGP_C57BL6NJ_P0047719 Msh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047720.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36503881 36522628 - MGP_C57BL6NJ_P0047720 Msh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047721.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36513219 36522858 - MGP_C57BL6NJ_P0047721 Msh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047722.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36515272 36519853 - Msh5 protein_coding retained_intron MGP_C57BL6NJ_T0047723.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36515272 36522611 - Msh5 protein_coding retained_intron MGP_C57BL6NJ_T0047724.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36520051 36522202 - Msh5 protein_coding retained_intron MGP_C57BL6NJ_T0047725.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36520060 36521097 - Msh5 protein_coding retained_intron MGP_C57BL6NJ_T0047726.1 MGP_C57BL6NJ_G0024013.1 mouse_genomes_project 17 36520185 36522606 - MGP_C57BL6NJ_P0047726 Msh5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046137.1 MGP_C57BL6NJ_G0023615.1 mouse_genomes_project 17 19577383 19607002 + MGP_C57BL6NJ_P0046137 Vmn2r107 protein_coding protein_coding MGP_C57BL6NJ_T0003885.1 MGP_C57BL6NJ_G0003488.1 mouse_genomes_project 17 28067899 28072423 + antisense antisense MGP_C57BL6NJ_T0047096.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30350427 30400072 + MGP_C57BL6NJ_P0047096 Cmtr1 protein_coding protein_coding MGP_C57BL6NJ_T0047097.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30350639 30364089 + MGP_C57BL6NJ_P0047097 Cmtr1 protein_coding protein_coding MGP_C57BL6NJ_T0047098.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30370132 30384601 + Cmtr1 protein_coding retained_intron MGP_C57BL6NJ_T0047099.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30370514 30373419 + MGP_C57BL6NJ_P0047099 Cmtr1 protein_coding protein_coding MGP_C57BL6NJ_T0047100.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30371699 30382831 + Cmtr1 protein_coding processed_transcript MGP_C57BL6NJ_T0047101.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30372429 30377182 + Cmtr1 protein_coding processed_transcript MGP_C57BL6NJ_T0047102.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30373402 30382935 + Cmtr1 protein_coding retained_intron MGP_C57BL6NJ_T0047103.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30377048 30382917 + Cmtr1 protein_coding retained_intron MGP_C57BL6NJ_T0047104.1 MGP_C57BL6NJ_G0023876.1 mouse_genomes_project 17 30378308 30397452 + Cmtr1 protein_coding retained_intron MGP_C57BL6NJ_T0046162.1 MGP_C57BL6NJ_G0023634.1 mouse_genomes_project 17 20697820 20698770 + MGP_C57BL6NJ_P0046162 Vmn1r237 protein_coding protein_coding MGP_C57BL6NJ_T0048146.1 MGP_C57BL6NJ_G0024136.1 mouse_genomes_project 17 40147878 40151123 - MGP_C57BL6NJ_P0048146 Olfr129 protein_coding protein_coding MGP_C57BL6NJ_T0048147.1 MGP_C57BL6NJ_G0024136.1 mouse_genomes_project 17 40147878 40155316 - MGP_C57BL6NJ_P0048147 Olfr129 protein_coding protein_coding MGP_C57BL6NJ_T0048943.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76299545 76356663 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048944.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76300541 76353850 + MGP_C57BL6NJ_P0048944 Lpin2 protein_coding protein_coding MGP_C57BL6NJ_T0048945.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76300708 76344439 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048946.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76300963 76371339 + MGP_C57BL6NJ_P0048946 Lpin2 protein_coding protein_coding MGP_C57BL6NJ_T0048947.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76325427 76353049 + MGP_C57BL6NJ_P0048947 Lpin2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048948.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76325449 76369764 + MGP_C57BL6NJ_P0048948 Lpin2 protein_coding protein_coding MGP_C57BL6NJ_T0048949.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76352976 76359607 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048950.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76360183 76360922 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048951.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76360193 76367976 + MGP_C57BL6NJ_P0048951 Lpin2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048952.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76362127 76366352 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048953.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76362228 76365005 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048954.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76363921 76367429 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0048955.1 MGP_C57BL6NJ_G0024410.1 mouse_genomes_project 17 76367552 76368837 + Lpin2 protein_coding retained_intron MGP_C57BL6NJ_T0046141.1 MGP_C57BL6NJ_G0023619.1 mouse_genomes_project 17 19782217 19808238 - MGP_C57BL6NJ_P0046141 Vmn2r109 protein_coding protein_coding MGP_C57BL6NJ_T0018007.1 MGP_C57BL6NJ_G0015729.1 mouse_genomes_project 17 11962405 11971486 - Gm16046 processed_transcript processed_transcript MGP_C57BL6NJ_T0018008.1 MGP_C57BL6NJ_G0015729.1 mouse_genomes_project 17 11967442 11971476 - Gm16046 processed_transcript processed_transcript MGP_C57BL6NJ_T0018009.1 MGP_C57BL6NJ_G0015729.1 mouse_genomes_project 17 11967971 11971505 - Gm16046 processed_transcript processed_transcript MGP_C57BL6NJ_T0046142.1 MGP_C57BL6NJ_G0023620.1 mouse_genomes_project 17 19821858 19846990 - MGP_C57BL6NJ_P0046142 Vmn2r110 protein_coding protein_coding MGP_C57BL6NJ_T0046991.1 MGP_C57BL6NJ_G0023852.1 mouse_genomes_project 17 29200413 29266332 - MGP_C57BL6NJ_P0046991 Slc26a8 protein_coding protein_coding MGP_C57BL6NJ_T0046992.1 MGP_C57BL6NJ_G0023852.1 mouse_genomes_project 17 29212400 29266332 - Slc26a8 protein_coding retained_intron MGP_C57BL6NJ_T0045972.1 MGP_C57BL6NJ_G0023558.1 mouse_genomes_project 17 10630168 10676175 + MGP_C57BL6NJ_P0045972 Slc22a2 protein_coding protein_coding MGP_C57BL6NJ_T0046539.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25295417 25345810 + MGP_C57BL6NJ_P0046539 Unkl protein_coding protein_coding MGP_C57BL6NJ_T0046540.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25295436 25342481 + MGP_C57BL6NJ_P0046540 Unkl protein_coding protein_coding MGP_C57BL6NJ_T0046541.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25296484 25314705 + MGP_C57BL6NJ_P0046541 Unkl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046542.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25319655 25324325 + Unkl protein_coding retained_intron MGP_C57BL6NJ_T0046543.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25333254 25340173 + MGP_C57BL6NJ_P0046543 Unkl protein_coding protein_coding MGP_C57BL6NJ_T0046544.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25333297 25345809 + MGP_C57BL6NJ_P0046544 Unkl protein_coding protein_coding MGP_C57BL6NJ_T0046545.1 MGP_C57BL6NJ_G0023750.1 mouse_genomes_project 17 25333494 25343234 + MGP_C57BL6NJ_P0046545 Unkl protein_coding protein_coding MGP_C57BL6NJ_T0102928.1 MGP_C57BL6NJ_G0040722.1 mouse_genomes_project 17 35808643 35808998 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102925.1 MGP_C57BL6NJ_G0040719.1 mouse_genomes_project 17 35358767 35359919 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048759.1 MGP_C57BL6NJ_G0024349.1 mouse_genomes_project 17 60953209 60986947 - MGP_C57BL6NJ_P0048759 Acer1 protein_coding protein_coding MGP_C57BL6NJ_T0003859.1 MGP_C57BL6NJ_G0003474.1 mouse_genomes_project 17 8363439 8383170 + A230009B12Rik antisense antisense MGP_C57BL6NJ_T0003860.1 MGP_C57BL6NJ_G0003474.1 mouse_genomes_project 17 8363445 8382806 + A230009B12Rik antisense antisense MGP_C57BL6NJ_T0003861.1 MGP_C57BL6NJ_G0003474.1 mouse_genomes_project 17 8363519 8402277 + A230009B12Rik antisense antisense MGP_C57BL6NJ_T0003862.1 MGP_C57BL6NJ_G0003474.1 mouse_genomes_project 17 8372011 8382805 + A230009B12Rik antisense antisense MGP_C57BL6NJ_T0003913.1 MGP_C57BL6NJ_G0003511.1 mouse_genomes_project 17 37821471 37843538 + antisense antisense MGP_C57BL6NJ_T0046193.1 MGP_C57BL6NJ_G0023649.1 mouse_genomes_project 17 21621244 21809304 - MGP_C57BL6NJ_P0046193 Zfp947 protein_coding protein_coding MGP_C57BL6NJ_T0099041.1 MGP_C57BL6NJ_G0037105.1 mouse_genomes_project 17 50492641 50492714 + Gm26216 rRNA rRNA MGP_C57BL6NJ_T0047549.1 MGP_C57BL6NJ_G0023984.1 mouse_genomes_project 17 35986851 35991851 + MGP_C57BL6NJ_P0047549 Pbx2 protein_coding protein_coding MGP_C57BL6NJ_T0047550.1 MGP_C57BL6NJ_G0023984.1 mouse_genomes_project 17 35987031 35990864 + MGP_C57BL6NJ_P0047550 Pbx2 protein_coding protein_coding MGP_C57BL6NJ_T0047551.1 MGP_C57BL6NJ_G0023984.1 mouse_genomes_project 17 35987694 35988683 + MGP_C57BL6NJ_P0047551 Pbx2 protein_coding protein_coding MGP_C57BL6NJ_T0047552.1 MGP_C57BL6NJ_G0023984.1 mouse_genomes_project 17 35989907 35990675 + Pbx2 protein_coding retained_intron MGP_C57BL6NJ_T0046961.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28864107 28867659 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046962.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28864107 28880729 - MGP_C57BL6NJ_P0046962 Tulp1 protein_coding protein_coding MGP_C57BL6NJ_T0046963.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28864108 28874393 - MGP_C57BL6NJ_P0046963 Tulp1 protein_coding protein_coding MGP_C57BL6NJ_T0046964.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28864446 28874361 - MGP_C57BL6NJ_P0046964 Tulp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046965.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28865122 28878501 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046966.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28865130 28868969 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046967.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28865654 28874820 - MGP_C57BL6NJ_P0046967 Tulp1 protein_coding protein_coding MGP_C57BL6NJ_T0046968.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28868409 28880763 - MGP_C57BL6NJ_P0046968 Tulp1 protein_coding protein_coding MGP_C57BL6NJ_T0046969.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28874148 28878013 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046970.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28877240 28878538 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046971.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28878275 28880727 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0046972.1 MGP_C57BL6NJ_G0023845.1 mouse_genomes_project 17 28879266 28880720 - Tulp1 protein_coding retained_intron MGP_C57BL6NJ_T0007144.1 MGP_C57BL6NJ_G0005876.1 mouse_genomes_project 17 74344497 74348728 + C030034I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0007145.1 MGP_C57BL6NJ_G0005876.1 mouse_genomes_project 17 74344556 74346027 + C030034I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0100079.1 MGP_C57BL6NJ_G0038125.1 mouse_genomes_project 17 36525329 36525433 + Gm23421 snRNA snRNA MGP_C57BL6NJ_T0001114.1 MGP_C57BL6NJ_G0001021.1 mouse_genomes_project 17 31235576 31237040 + TEC TEC MGP_C57BL6NJ_T0001115.1 MGP_C57BL6NJ_G0001021.1 mouse_genomes_project 17 31236426 31236879 + TEC TEC MGP_C57BL6NJ_T0049107.1 MGP_C57BL6NJ_G0024472.1 mouse_genomes_project 17 87028292 87067417 - MGP_C57BL6NJ_P0049107 Thumpd2 protein_coding protein_coding MGP_C57BL6NJ_T0046066.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952177 13969702 + MGP_C57BL6NJ_P0046066 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046067.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952177 13982296 + MGP_C57BL6NJ_P0046067 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046068.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952177 13956886 + MGP_C57BL6NJ_P0046068 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046069.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952190 13959735 + MGP_C57BL6NJ_P0046069 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046070.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952199 13969702 + MGP_C57BL6NJ_P0046070 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046071.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952201 13959640 + MGP_C57BL6NJ_P0046071 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046072.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952211 13966653 + MGP_C57BL6NJ_P0046072 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046073.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952217 13956728 + MGP_C57BL6NJ_P0046073 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046074.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13952249 13969702 + MGP_C57BL6NJ_P0046074 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046075.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13956863 13969143 + MGP_C57BL6NJ_P0046075 Tbp protein_coding protein_coding MGP_C57BL6NJ_T0046076.1 MGP_C57BL6NJ_G0023584.1 mouse_genomes_project 17 13967763 13969210 + Tbp protein_coding retained_intron MGP_C57BL6NJ_T0046093.1 MGP_C57BL6NJ_G0023588.1 mouse_genomes_project 17 14288312 14308598 - MGP_C57BL6NJ_P0046093 Rgmb protein_coding protein_coding MGP_C57BL6NJ_T0013545.1 MGP_C57BL6NJ_G0011590.1 mouse_genomes_project 17 28238556 28239710 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003863.1 MGP_C57BL6NJ_G0003475.1 mouse_genomes_project 17 8405667 8483307 + Gm16168 antisense antisense MGP_C57BL6NJ_T0003864.1 MGP_C57BL6NJ_G0003475.1 mouse_genomes_project 17 8405674 8465791 + Gm16168 antisense antisense MGP_C57BL6NJ_T0046413.1 MGP_C57BL6NJ_G0023720.1 mouse_genomes_project 17 24707685 24708813 - MGP_C57BL6NJ_P0046413 Npw protein_coding protein_coding MGP_C57BL6NJ_T0048109.1 MGP_C57BL6NJ_G0024104.1 mouse_genomes_project 17 39211760 39212734 - MGP_C57BL6NJ_P0048109 Olfr95 protein_coding protein_coding MGP_C57BL6NJ_T0049034.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80480080 80893256 + MGP_C57BL6NJ_P0049034 Ltbp1 protein_coding protein_coding MGP_C57BL6NJ_T0049035.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80669489 80849224 + MGP_C57BL6NJ_P0049035 Ltbp1 protein_coding protein_coding MGP_C57BL6NJ_T0049036.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80669489 80892825 + MGP_C57BL6NJ_P0049036 Ltbp1 protein_coding protein_coding MGP_C57BL6NJ_T0049037.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80669590 80892815 + MGP_C57BL6NJ_P0049037 Ltbp1 protein_coding protein_coding MGP_C57BL6NJ_T0049038.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80785988 80790380 + Ltbp1 protein_coding retained_intron MGP_C57BL6NJ_T0049039.1 MGP_C57BL6NJ_G0024437.1 mouse_genomes_project 17 80885698 80894001 + Ltbp1 protein_coding retained_intron MGP_C57BL6NJ_T0018021.1 MGP_C57BL6NJ_G0015734.1 mouse_genomes_project 17 25709023 25713260 + 2810468N07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0048797.1 MGP_C57BL6NJ_G0024368.1 mouse_genomes_project 17 61442444 61567913 + MGP_C57BL6NJ_P0048797 Adgre1 protein_coding protein_coding MGP_C57BL6NJ_T0048798.1 MGP_C57BL6NJ_G0024368.1 mouse_genomes_project 17 61442472 61567907 + MGP_C57BL6NJ_P0048798 Adgre1 protein_coding protein_coding MGP_C57BL6NJ_T0100077.1 MGP_C57BL6NJ_G0038123.1 mouse_genomes_project 17 35192627 35192732 + Gm23111 snRNA snRNA MGP_C57BL6NJ_T0048215.1 MGP_C57BL6NJ_G0024182.1 mouse_genomes_project 17 46498791 46514993 - MGP_C57BL6NJ_P0048215 Tdrd6 protein_coding protein_coding MGP_C57BL6NJ_T0048216.1 MGP_C57BL6NJ_G0024182.1 mouse_genomes_project 17 46498795 46514993 - MGP_C57BL6NJ_P0048216 Tdrd6 protein_coding protein_coding MGP_C57BL6NJ_T0048217.1 MGP_C57BL6NJ_G0024182.1 mouse_genomes_project 17 46499015 46503852 - Tdrd6 protein_coding processed_transcript MGP_C57BL6NJ_T0102956.1 MGP_C57BL6NJ_G0040750.1 mouse_genomes_project 17 38451818 38454682 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047957.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37589102 37595113 - MGP_C57BL6NJ_P0047957 Mrps18b protein_coding protein_coding MGP_C57BL6NJ_T0047958.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37589102 37595113 - MGP_C57BL6NJ_P0047958 Mrps18b protein_coding protein_coding MGP_C57BL6NJ_T0047959.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37589109 37595054 - MGP_C57BL6NJ_P0047959 Mrps18b protein_coding protein_coding MGP_C57BL6NJ_T0047960.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37589226 37591290 - Mrps18b protein_coding retained_intron MGP_C57BL6NJ_T0047961.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37589574 37595061 - MGP_C57BL6NJ_P0047961 Mrps18b protein_coding protein_coding MGP_C57BL6NJ_T0047962.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37590164 37595047 - MGP_C57BL6NJ_P0047962 Mrps18b protein_coding protein_coding MGP_C57BL6NJ_T0047963.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37592512 37595101 - Mrps18b protein_coding retained_intron MGP_C57BL6NJ_T0047964.1 MGP_C57BL6NJ_G0024063.1 mouse_genomes_project 17 37593284 37594927 - Mrps18b protein_coding processed_transcript MGP_C57BL6NJ_T0013591.1 MGP_C57BL6NJ_G0011636.1 mouse_genomes_project 17 57017968 57019798 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047066.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30000880 30020655 - MGP_C57BL6NJ_P0047066 Mtch1 protein_coding protein_coding MGP_C57BL6NJ_T0047067.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30000884 30020655 - MGP_C57BL6NJ_P0047067 Mtch1 protein_coding protein_coding MGP_C57BL6NJ_T0047068.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30000922 30002814 - Mtch1 protein_coding processed_transcript MGP_C57BL6NJ_T0047069.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30002527 30002916 - Mtch1 protein_coding processed_transcript MGP_C57BL6NJ_T0047070.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30006046 30011122 - Mtch1 protein_coding retained_intron MGP_C57BL6NJ_T0047071.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30010500 30019923 - MGP_C57BL6NJ_P0047071 Mtch1 protein_coding protein_coding MGP_C57BL6NJ_T0047072.1 MGP_C57BL6NJ_G0023868.1 mouse_genomes_project 17 30011460 30013601 - Mtch1 protein_coding retained_intron MGP_C57BL6NJ_T0048654.1 MGP_C57BL6NJ_G0024308.1 mouse_genomes_project 17 59864934 59873661 + MGP_C57BL6NJ_P0048654 Ccdc94 protein_coding protein_coding MGP_C57BL6NJ_T0046447.1 MGP_C57BL6NJ_G0023730.1 mouse_genomes_project 17 24829007 24834648 + MGP_C57BL6NJ_P0046447 Hs3st6 protein_coding protein_coding MGP_C57BL6NJ_T0003865.1 MGP_C57BL6NJ_G0003476.1 mouse_genomes_project 17 9017898 9025117 - Gm28505 antisense antisense MGP_C57BL6NJ_T0049048.1 MGP_C57BL6NJ_G0024442.1 mouse_genomes_project 17 84285822 84425218 + MGP_C57BL6NJ_P0049048 Vit protein_coding protein_coding MGP_C57BL6NJ_T0046148.1 MGP_C57BL6NJ_G0023626.1 mouse_genomes_project 17 20146039 20146975 - MGP_C57BL6NJ_P0046148 Vmn1r231 protein_coding protein_coding MGP_C57BL6NJ_T0100106.1 MGP_C57BL6NJ_G0038152.1 mouse_genomes_project 17 100292475 100292582 - Gm25935 snRNA snRNA MGP_C57BL6NJ_T0013547.1 MGP_C57BL6NJ_G0011592.1 mouse_genomes_project 17 35221463 35221722 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102927.1 MGP_C57BL6NJ_G0040721.1 mouse_genomes_project 17 35699860 35708356 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048700.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60285393 60315877 + MGP_C57BL6NJ_P0048700 Kdm4b protein_coding protein_coding MGP_C57BL6NJ_T0048701.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60285405 60362644 + MGP_C57BL6NJ_P0048701 Kdm4b protein_coding protein_coding MGP_C57BL6NJ_T0048702.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60285422 60362639 + MGP_C57BL6NJ_P0048702 Kdm4b protein_coding protein_coding MGP_C57BL6NJ_T0048703.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60332129 60345935 + Kdm4b protein_coding processed_transcript MGP_C57BL6NJ_T0048704.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60353296 60353565 + Kdm4b protein_coding processed_transcript MGP_C57BL6NJ_T0048705.1 MGP_C57BL6NJ_G0024330.1 mouse_genomes_project 17 60353699 60362650 + MGP_C57BL6NJ_P0048705 Kdm4b protein_coding protein_coding MGP_C57BL6NJ_T0102436.1 MGP_C57BL6NJ_G0040341.1 mouse_genomes_project 17 3626324 3653797 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102437.1 MGP_C57BL6NJ_G0040341.1 mouse_genomes_project 17 3626324 3653578 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102438.1 MGP_C57BL6NJ_G0040341.1 mouse_genomes_project 17 3642761 3654200 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0011692.1 MGP_C57BL6NJ_G0009777.1 mouse_genomes_project 17 52113065 52113323 - Gm23642 misc_RNA misc_RNA MGP_C57BL6NJ_T0049076.1 MGP_C57BL6NJ_G0024454.1 mouse_genomes_project 17 85503185 85563584 + MGP_C57BL6NJ_P0049076 Rmdn2 protein_coding protein_coding MGP_C57BL6NJ_T0049077.1 MGP_C57BL6NJ_G0024454.1 mouse_genomes_project 17 85503907 85563118 + MGP_C57BL6NJ_P0049077 Rmdn2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048550.1 MGP_C57BL6NJ_G0024273.1 mouse_genomes_project 17 51707892 51709194 + B430306N03Rik protein_coding retained_intron MGP_C57BL6NJ_T0048551.1 MGP_C57BL6NJ_G0024273.1 mouse_genomes_project 17 51707892 51717992 + MGP_C57BL6NJ_P0048551 B430306N03Rik protein_coding protein_coding MGP_C57BL6NJ_T0048552.1 MGP_C57BL6NJ_G0024273.1 mouse_genomes_project 17 51707892 51716493 + MGP_C57BL6NJ_P0048552 B430306N03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102961.1 MGP_C57BL6NJ_G0040755.1 mouse_genomes_project 17 38618332 38618380 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049101.1 MGP_C57BL6NJ_G0024467.1 mouse_genomes_project 17 86351088 86442450 - MGP_C57BL6NJ_P0049101 Sos1 protein_coding protein_coding MGP_C57BL6NJ_T0013575.1 MGP_C57BL6NJ_G0011620.1 mouse_genomes_project 17 39913196 39915816 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048572.1 MGP_C57BL6NJ_G0024278.1 mouse_genomes_project 17 51820616 51833920 - MGP_C57BL6NJ_P0048572 Apobec2 protein_coding protein_coding MGP_C57BL6NJ_T0099045.1 MGP_C57BL6NJ_G0037109.1 mouse_genomes_project 17 84322423 84322534 - Gm22562 rRNA rRNA MGP_C57BL6NJ_T0013576.1 MGP_C57BL6NJ_G0011621.1 mouse_genomes_project 17 39937490 39938427 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046219.1 MGP_C57BL6NJ_G0023662.1 mouse_genomes_project 17 23181121 23255036 + MGP_C57BL6NJ_P0046219 protein_coding protein_coding MGP_C57BL6NJ_T0100067.1 MGP_C57BL6NJ_G0038113.1 mouse_genomes_project 17 11962119 11962226 + Gm24867 snRNA snRNA MGP_C57BL6NJ_T0013517.1 MGP_C57BL6NJ_G0011562.1 mouse_genomes_project 17 2361023 2365342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049123.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927455 90018716 + MGP_C57BL6NJ_P0049123 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049124.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927455 90031266 + MGP_C57BL6NJ_P0049124 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049125.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927455 90018718 + MGP_C57BL6NJ_P0049125 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049126.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927476 90047364 + MGP_C57BL6NJ_P0049126 Mta3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049127.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927483 90040753 + MGP_C57BL6NJ_P0049127 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049128.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89927550 90049507 + MGP_C57BL6NJ_P0049128 Mta3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049129.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89951977 89978370 + Mta3 protein_coding processed_transcript MGP_C57BL6NJ_T0049130.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 89980135 90026083 + MGP_C57BL6NJ_P0049130 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049131.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 90010176 90046064 + MGP_C57BL6NJ_P0049131 Mta3 protein_coding protein_coding MGP_C57BL6NJ_T0049132.1 MGP_C57BL6NJ_G0024480.1 mouse_genomes_project 17 90021264 90030440 + Mta3 protein_coding processed_transcript MGP_C57BL6NJ_T0048058.1 MGP_C57BL6NJ_G0024090.1 mouse_genomes_project 17 38893601 38898670 + MGP_C57BL6NJ_P0048058 Rnf39 protein_coding protein_coding MGP_C57BL6NJ_T0048059.1 MGP_C57BL6NJ_G0024090.1 mouse_genomes_project 17 38893738 38896299 + MGP_C57BL6NJ_P0048059 Rnf39 protein_coding protein_coding MGP_C57BL6NJ_T0048060.1 MGP_C57BL6NJ_G0024090.1 mouse_genomes_project 17 38895761 38897970 + MGP_C57BL6NJ_P0048060 Rnf39 protein_coding protein_coding MGP_C57BL6NJ_T0102603.1 MGP_C57BL6NJ_G0040416.1 mouse_genomes_project 17 43519620 43534871 + unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0048897.1 MGP_C57BL6NJ_G0024402.1 mouse_genomes_project 17 74310456 74319890 + MGP_C57BL6NJ_P0048897 Zbtb14 protein_coding protein_coding MGP_C57BL6NJ_T0048898.1 MGP_C57BL6NJ_G0024402.1 mouse_genomes_project 17 74310725 74319890 + MGP_C57BL6NJ_P0048898 Zbtb14 protein_coding protein_coding MGP_C57BL6NJ_T0048899.1 MGP_C57BL6NJ_G0024402.1 mouse_genomes_project 17 74311246 74319890 + MGP_C57BL6NJ_P0048899 Zbtb14 protein_coding protein_coding MGP_C57BL6NJ_T0007111.1 MGP_C57BL6NJ_G0005855.1 mouse_genomes_project 17 37433320 37441906 + 4833427F10Rik lincRNA lincRNA MGP_C57BL6NJ_T0001120.1 MGP_C57BL6NJ_G0001026.1 mouse_genomes_project 17 55351221 55356022 - TEC TEC MGP_C57BL6NJ_T0102948.1 MGP_C57BL6NJ_G0040742.1 mouse_genomes_project 17 38024620 38025529 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048606.1 MGP_C57BL6NJ_G0024287.1 mouse_genomes_project 17 54018762 54201640 + MGP_C57BL6NJ_P0048606 Plcl2 protein_coding protein_coding MGP_C57BL6NJ_T0048688.1 MGP_C57BL6NJ_G0024323.1 mouse_genomes_project 17 60120486 60155569 - MGP_C57BL6NJ_P0048688 Dpp9 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0100083.1 MGP_C57BL6NJ_G0038129.1 mouse_genomes_project 17 46316241 46316384 + Gm25135 snRNA snRNA MGP_C57BL6NJ_T0007122.1 MGP_C57BL6NJ_G0005864.1 mouse_genomes_project 17 48795200 48847913 + lincRNA lincRNA MGP_C57BL6NJ_T0007123.1 MGP_C57BL6NJ_G0005864.1 mouse_genomes_project 17 48820532 48855256 + lincRNA lincRNA MGP_C57BL6NJ_T0047280.1 MGP_C57BL6NJ_G0023924.1 mouse_genomes_project 17 34006133 34011896 + Zfp952 protein_coding processed_transcript MGP_C57BL6NJ_T0047281.1 MGP_C57BL6NJ_G0023924.1 mouse_genomes_project 17 34006201 34019771 + Zfp952 protein_coding processed_transcript MGP_C57BL6NJ_T0047282.1 MGP_C57BL6NJ_G0023924.1 mouse_genomes_project 17 34006201 34019771 + MGP_C57BL6NJ_P0047282 Zfp952 protein_coding protein_coding MGP_C57BL6NJ_T0047283.1 MGP_C57BL6NJ_G0023924.1 mouse_genomes_project 17 34006205 34017400 + MGP_C57BL6NJ_P0047283 Zfp952 protein_coding protein_coding MGP_C57BL6NJ_T0049237.1 MGP_C57BL6NJ_G0024520.1 mouse_genomes_project 17 95730830 95957732 - MGP_C57BL6NJ_P0049237 Fshr protein_coding protein_coding MGP_C57BL6NJ_T0013561.1 MGP_C57BL6NJ_G0011606.1 mouse_genomes_project 17 38041065 38041275 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049094.1 MGP_C57BL6NJ_G0024462.1 mouse_genomes_project 17 86166303 86172646 + Gemin6 protein_coding processed_transcript MGP_C57BL6NJ_T0049095.1 MGP_C57BL6NJ_G0024462.1 mouse_genomes_project 17 86166303 86174325 + MGP_C57BL6NJ_P0049095 Gemin6 protein_coding protein_coding MGP_C57BL6NJ_T0047126.1 MGP_C57BL6NJ_G0023882.1 mouse_genomes_project 17 31385878 31659655 + MGP_C57BL6NJ_P0047126 Dnah8 protein_coding protein_coding MGP_C57BL6NJ_T0048800.1 MGP_C57BL6NJ_G0024370.1 mouse_genomes_project 17 61806904 61807357 - MGP_C57BL6NJ_P0048800 Gm21834 protein_coding protein_coding MGP_C57BL6NJ_T0047989.1 MGP_C57BL6NJ_G0024068.1 mouse_genomes_project 17 37716071 37728079 - MGP_C57BL6NJ_P0047989 H2-T24 protein_coding protein_coding MGP_C57BL6NJ_T0047990.1 MGP_C57BL6NJ_G0024068.1 mouse_genomes_project 17 37716645 37728044 - MGP_C57BL6NJ_P0047990 H2-T24 protein_coding protein_coding MGP_C57BL6NJ_T0048758.1 MGP_C57BL6NJ_G0024348.1 mouse_genomes_project 17 60888950 60931718 - MGP_C57BL6NJ_P0048758 Mllt1 protein_coding protein_coding MGP_C57BL6NJ_T0010436.1 MGP_C57BL6NJ_G0008521.1 mouse_genomes_project 17 60378847 60378911 - Mir6977 miRNA miRNA MGP_C57BL6NJ_T0102926.1 MGP_C57BL6NJ_G0040720.1 mouse_genomes_project 17 35637010 35638719 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046261.1 MGP_C57BL6NJ_G0023678.1 mouse_genomes_project 17 23658039 23678988 - MGP_C57BL6NJ_P0046261 Flywch1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046262.1 MGP_C57BL6NJ_G0023678.1 mouse_genomes_project 17 23660667 23679029 - MGP_C57BL6NJ_P0046262 Flywch1 protein_coding protein_coding MGP_C57BL6NJ_T0046263.1 MGP_C57BL6NJ_G0023678.1 mouse_genomes_project 17 23660676 23670895 - MGP_C57BL6NJ_P0046263 Flywch1 protein_coding protein_coding MGP_C57BL6NJ_T0048496.1 MGP_C57BL6NJ_G0024261.1 mouse_genomes_project 17 50942874 50953358 + MGP_C57BL6NJ_P0048496 Frs3 protein_coding protein_coding MGP_C57BL6NJ_T0048499.1 MGP_C57BL6NJ_G0024261.1 mouse_genomes_project 17 50949045 50958093 + MGP_C57BL6NJ_P0048499 Frs3 protein_coding protein_coding MGP_C57BL6NJ_T0048500.1 MGP_C57BL6NJ_G0024261.1 mouse_genomes_project 17 50949072 50951517 + Frs3 protein_coding processed_transcript MGP_C57BL6NJ_T0048501.1 MGP_C57BL6NJ_G0024261.1 mouse_genomes_project 17 50953365 50954682 + Frs3 protein_coding processed_transcript MGP_C57BL6NJ_T0048502.1 MGP_C57BL6NJ_G0024261.1 mouse_genomes_project 17 50955871 50958091 + Frs3 protein_coding processed_transcript MGP_C57BL6NJ_T0048641.1 MGP_C57BL6NJ_G0024299.1 mouse_genomes_project 17 58067773 58096404 - MGP_C57BL6NJ_P0048641 Slc5a7 protein_coding protein_coding MGP_C57BL6NJ_T0048893.1 MGP_C57BL6NJ_G0024400.1 mouse_genomes_project 17 73722406 73728461 + MGP_C57BL6NJ_P0048893 Tmem200c protein_coding protein_coding MGP_C57BL6NJ_T0048364.1 MGP_C57BL6NJ_G0024216.1 mouse_genomes_project 17 49397868 49403006 + MGP_C57BL6NJ_P0048364 Dlk2 protein_coding protein_coding MGP_C57BL6NJ_T0048365.1 MGP_C57BL6NJ_G0024216.1 mouse_genomes_project 17 49397868 49405272 + MGP_C57BL6NJ_P0048365 Dlk2 protein_coding protein_coding MGP_C57BL6NJ_T0048366.1 MGP_C57BL6NJ_G0024216.1 mouse_genomes_project 17 49400140 49405279 + MGP_C57BL6NJ_P0048366 Dlk2 protein_coding protein_coding MGP_C57BL6NJ_T0102917.1 MGP_C57BL6NJ_G0040711.1 mouse_genomes_project 17 23061639 23096384 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048174.1 MGP_C57BL6NJ_G0024157.1 mouse_genomes_project 17 42909278 42932566 - MGP_C57BL6NJ_P0048174 Crisp1 protein_coding protein_coding MGP_C57BL6NJ_T0011688.1 MGP_C57BL6NJ_G0009773.1 mouse_genomes_project 17 38972532 38972780 + Gm22388 misc_RNA misc_RNA MGP_C57BL6NJ_T0048610.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55318872 55419238 - MGP_C57BL6NJ_P0048610 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048611.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55318873 55413158 - MGP_C57BL6NJ_P0048611 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048612.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55321579 55419828 - MGP_C57BL6NJ_P0048612 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048613.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55322137 55396550 - MGP_C57BL6NJ_P0048613 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048614.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55322140 55413136 - MGP_C57BL6NJ_P0048614 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048615.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55322156 55400640 - MGP_C57BL6NJ_P0048615 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048616.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55322161 55398311 - MGP_C57BL6NJ_P0048616 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048617.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55322673 55324952 - Satb1 protein_coding retained_intron MGP_C57BL6NJ_T0048618.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55387960 55394763 - Satb1 protein_coding processed_transcript MGP_C57BL6NJ_T0048619.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55389996 55407664 - MGP_C57BL6NJ_P0048619 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048620.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55390993 55418585 - MGP_C57BL6NJ_P0048620 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048621.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55392710 55396550 - Satb1 protein_coding retained_intron MGP_C57BL6NJ_T0048622.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55394819 55413158 - MGP_C57BL6NJ_P0048622 Satb1 protein_coding protein_coding MGP_C57BL6NJ_T0048623.1 MGP_C57BL6NJ_G0024290.1 mouse_genomes_project 17 55411218 55416067 - Satb1 protein_coding retained_intron MGP_C57BL6NJ_T0047597.1 MGP_C57BL6NJ_G0023992.1 mouse_genomes_project 17 36054444 36062373 + MGP_C57BL6NJ_P0047597 Atf6b protein_coding protein_coding MGP_C57BL6NJ_T0047598.1 MGP_C57BL6NJ_G0023992.1 mouse_genomes_project 17 36054499 36056446 + MGP_C57BL6NJ_P0047598 Atf6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047599.1 MGP_C57BL6NJ_G0023992.1 mouse_genomes_project 17 36054499 36056501 + MGP_C57BL6NJ_P0047599 Atf6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047600.1 MGP_C57BL6NJ_G0023992.1 mouse_genomes_project 17 36054509 36062178 + MGP_C57BL6NJ_P0047600 Atf6b protein_coding protein_coding MGP_C57BL6NJ_T0047601.1 MGP_C57BL6NJ_G0023992.1 mouse_genomes_project 17 36058925 36059402 + Atf6b protein_coding retained_intron MGP_C57BL6NJ_T0049002.1 MGP_C57BL6NJ_G0024431.1 mouse_genomes_project 17 79724504 79778989 + MGP_C57BL6NJ_P0049002 Spast protein_coding protein_coding MGP_C57BL6NJ_T0049003.1 MGP_C57BL6NJ_G0024431.1 mouse_genomes_project 17 79724554 79778990 + MGP_C57BL6NJ_P0049003 Spast protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007150.1 MGP_C57BL6NJ_G0005880.1 mouse_genomes_project 17 80007743 80060174 - Gm26749 lincRNA lincRNA MGP_C57BL6NJ_T0048790.1 MGP_C57BL6NJ_G0024365.1 mouse_genomes_project 17 61300374 61313090 - MGP_C57BL6NJ_P0048790 Gpr108 protein_coding protein_coding MGP_C57BL6NJ_T0102938.1 MGP_C57BL6NJ_G0040732.1 mouse_genomes_project 17 37635345 37640397 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046236.1 MGP_C57BL6NJ_G0023667.1 mouse_genomes_project 17 23519239 23535883 - MGP_C57BL6NJ_P0046236 Mmp25 protein_coding protein_coding MGP_C57BL6NJ_T0048028.1 MGP_C57BL6NJ_G0024076.1 mouse_genomes_project 17 38105505 38112766 - MGP_C57BL6NJ_P0048028 H2-M10.2 protein_coding protein_coding MGP_C57BL6NJ_T0048595.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53092359 53245180 + Kif6 protein_coding retained_intron MGP_C57BL6NJ_T0048596.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53092362 53161064 + MGP_C57BL6NJ_P0048596 Kif6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048597.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53092395 53403854 + MGP_C57BL6NJ_P0048597 Kif6 protein_coding protein_coding MGP_C57BL6NJ_T0048598.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53199657 53245180 + Kif6 protein_coding retained_intron MGP_C57BL6NJ_T0048599.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53224950 53245182 + Kif6 protein_coding retained_intron MGP_C57BL6NJ_T0048600.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53243702 53248825 + Kif6 protein_coding retained_intron MGP_C57BL6NJ_T0048601.1 MGP_C57BL6NJ_G0024284.1 mouse_genomes_project 17 53381648 53403854 + Kif6 protein_coding retained_intron MGP_C57BL6NJ_T0007069.1 MGP_C57BL6NJ_G0005820.1 mouse_genomes_project 17 15549745 15552732 + lincRNA lincRNA MGP_C57BL6NJ_T0007070.1 MGP_C57BL6NJ_G0005820.1 mouse_genomes_project 17 15551484 15552345 + lincRNA lincRNA MGP_C57BL6NJ_T0046566.1 MGP_C57BL6NJ_G0023755.1 mouse_genomes_project 17 25416790 25418558 + MGP_C57BL6NJ_P0046566 Prss34 protein_coding protein_coding MGP_C57BL6NJ_T0047194.1 MGP_C57BL6NJ_G0023900.1 mouse_genomes_project 17 32740116 32752699 - MGP_C57BL6NJ_P0047194 Sik1 protein_coding protein_coding MGP_C57BL6NJ_T0048765.1 MGP_C57BL6NJ_G0024353.1 mouse_genomes_project 17 61011417 61021060 - MGP_C57BL6NJ_P0048765 Gtf2f1 protein_coding protein_coding MGP_C57BL6NJ_T0102962.1 MGP_C57BL6NJ_G0040756.1 mouse_genomes_project 17 38619046 38619374 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018005.1 MGP_C57BL6NJ_G0015728.1 mouse_genomes_project 17 8741922 8762463 + Gm16169 processed_transcript antisense MGP_C57BL6NJ_T0018006.1 MGP_C57BL6NJ_G0015728.1 mouse_genomes_project 17 8741927 8750671 + Gm16169 processed_transcript retained_intron MGP_C57BL6NJ_T0046835.1 MGP_C57BL6NJ_G0023818.1 mouse_genomes_project 17 27307885 27310924 + MGP_C57BL6NJ_P0046835 Zbtb9 protein_coding protein_coding MGP_C57BL6NJ_T0049001.1 MGP_C57BL6NJ_G0024430.1 mouse_genomes_project 17 79674876 79692008 - MGP_C57BL6NJ_P0049001 Dpy30 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013574.1 MGP_C57BL6NJ_G0011619.1 mouse_genomes_project 17 39156046 39156965 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046149.1 MGP_C57BL6NJ_G0023627.1 mouse_genomes_project 17 20170733 20171892 - MGP_C57BL6NJ_P0046149 Vmn1r232 protein_coding protein_coding MGP_C57BL6NJ_T0046144.1 MGP_C57BL6NJ_G0023622.1 mouse_genomes_project 17 19939626 19940523 + MGP_C57BL6NJ_P0046144 Vmn1r226 protein_coding protein_coding MGP_C57BL6NJ_T0045952.1 MGP_C57BL6NJ_G0023552.1 mouse_genomes_project 17 8307511 8776892 - MGP_C57BL6NJ_P0045952 Pacrg protein_coding protein_coding MGP_C57BL6NJ_T0045953.1 MGP_C57BL6NJ_G0023552.1 mouse_genomes_project 17 8492125 8549987 - Pacrg protein_coding processed_transcript MGP_C57BL6NJ_T0007077.1 MGP_C57BL6NJ_G0005827.1 mouse_genomes_project 17 23648478 23656160 + 9530082P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007078.1 MGP_C57BL6NJ_G0005827.1 mouse_genomes_project 17 23654480 23659310 + 9530082P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0007079.1 MGP_C57BL6NJ_G0005827.1 mouse_genomes_project 17 23654581 23656452 + 9530082P21Rik lincRNA lincRNA MGP_C57BL6NJ_T0049075.1 MGP_C57BL6NJ_G0024453.1 mouse_genomes_project 17 85180992 85202059 - MGP_C57BL6NJ_P0049075 Cdc42ep3 protein_coding protein_coding MGP_C57BL6NJ_T0048769.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61059905 61092512 - MGP_C57BL6NJ_P0048769 Slc25a23 protein_coding protein_coding MGP_C57BL6NJ_T0048770.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61061393 61084553 - MGP_C57BL6NJ_P0048770 Slc25a23 protein_coding protein_coding MGP_C57BL6NJ_T0048771.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61061679 61085558 - MGP_C57BL6NJ_P0048771 Slc25a23 protein_coding protein_coding MGP_C57BL6NJ_T0048772.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61063245 61085311 - MGP_C57BL6NJ_P0048772 Slc25a23 protein_coding protein_coding MGP_C57BL6NJ_T0048773.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61063389 61087114 - MGP_C57BL6NJ_P0048773 Slc25a23 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048774.1 MGP_C57BL6NJ_G0024356.1 mouse_genomes_project 17 61087953 61092468 - Slc25a23 protein_coding retained_intron MGP_C57BL6NJ_T0013519.1 MGP_C57BL6NJ_G0011564.1 mouse_genomes_project 17 2361027 2364458 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045954.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 8776964 9529844 + Park2 protein_coding retained_intron MGP_C57BL6NJ_T0045955.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 8776964 9529844 + Park2 protein_coding retained_intron MGP_C57BL6NJ_T0045956.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 8776964 10092350 + MGP_C57BL6NJ_P0045956 Park2 protein_coding protein_coding MGP_C57BL6NJ_T0045957.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 8776971 8883539 + Park2 protein_coding processed_transcript MGP_C57BL6NJ_T0045958.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 9002777 9444546 + MGP_C57BL6NJ_P0045958 Park2 protein_coding protein_coding MGP_C57BL6NJ_T0045959.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 9241916 9594130 + MGP_C57BL6NJ_P0045959 Park2 protein_coding protein_coding MGP_C57BL6NJ_T0045960.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 9839641 9869583 + MGP_C57BL6NJ_P0045960 Park2 protein_coding protein_coding MGP_C57BL6NJ_T0045961.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 9846249 9869583 + Park2 protein_coding processed_transcript MGP_C57BL6NJ_T0045962.1 MGP_C57BL6NJ_G0023553.1 mouse_genomes_project 17 10055673 10092347 + Park2 protein_coding processed_transcript MGP_C57BL6NJ_T0013572.1 MGP_C57BL6NJ_G0011617.1 mouse_genomes_project 17 39104866 39105533 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048933.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76080206 76096487 - MGP_C57BL6NJ_P0048933 Myl12a protein_coding protein_coding MGP_C57BL6NJ_T0048934.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76080844 76096098 - Myl12a protein_coding retained_intron MGP_C57BL6NJ_T0048935.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76080844 76084563 - MGP_C57BL6NJ_P0048935 Myl12a protein_coding protein_coding MGP_C57BL6NJ_T0048936.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76081099 76096811 - MGP_C57BL6NJ_P0048936 Myl12a protein_coding protein_coding MGP_C57BL6NJ_T0048937.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76082684 76096120 - MGP_C57BL6NJ_P0048937 Myl12a protein_coding protein_coding MGP_C57BL6NJ_T0048938.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76082935 76096093 - Myl12a protein_coding retained_intron MGP_C57BL6NJ_T0048939.1 MGP_C57BL6NJ_G0024408.1 mouse_genomes_project 17 76083256 76095950 - MGP_C57BL6NJ_P0048939 Myl12a protein_coding protein_coding MGP_C57BL6NJ_T0010405.1 MGP_C57BL6NJ_G0008490.1 mouse_genomes_project 17 27278410 27278474 - Mir3083 miRNA miRNA MGP_C57BL6NJ_T0048827.1 MGP_C57BL6NJ_G0024381.1 mouse_genomes_project 17 69998069 70294564 - MGP_C57BL6NJ_P0048827 Tmem232 protein_coding protein_coding MGP_C57BL6NJ_T0048828.1 MGP_C57BL6NJ_G0024381.1 mouse_genomes_project 17 69998071 70294558 - MGP_C57BL6NJ_P0048828 Tmem232 protein_coding protein_coding MGP_C57BL6NJ_T0046711.1 MGP_C57BL6NJ_G0023789.1 mouse_genomes_project 17 26108960 26111702 - MGP_C57BL6NJ_P0046711 Nhlrc4 protein_coding protein_coding MGP_C57BL6NJ_T0046712.1 MGP_C57BL6NJ_G0023789.1 mouse_genomes_project 17 26110881 26111731 - Nhlrc4 protein_coding processed_transcript MGP_C57BL6NJ_T0046713.1 MGP_C57BL6NJ_G0023789.1 mouse_genomes_project 17 26110969 26111601 - Nhlrc4 protein_coding processed_transcript MGP_C57BL6NJ_T0010446.1 MGP_C57BL6NJ_G0008531.1 mouse_genomes_project 17 97074667 97074761 + Gm24510 miRNA miRNA MGP_C57BL6NJ_T0013553.1 MGP_C57BL6NJ_G0011598.1 mouse_genomes_project 17 36967330 36977660 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049052.1 MGP_C57BL6NJ_G0024445.1 mouse_genomes_project 17 84650485 84663187 + MGP_C57BL6NJ_P0049052 Gpatch11 protein_coding protein_coding MGP_C57BL6NJ_T0045841.1 MGP_C57BL6NJ_G0023520.1 mouse_genomes_project 17 759454 822506 - MGP_C57BL6NJ_P0045841 Nox3 protein_coding protein_coding MGP_C57BL6NJ_T0048678.1 MGP_C57BL6NJ_G0024317.1 mouse_genomes_project 17 60032402 60039984 - MGP_C57BL6NJ_P0048678 Plin4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007143.1 MGP_C57BL6NJ_G0005875.1 mouse_genomes_project 17 74343755 74367738 - A930029G22Rik lincRNA lincRNA MGP_C57BL6NJ_T0046371.1 MGP_C57BL6NJ_G0023711.1 mouse_genomes_project 17 24503945 24509475 - MGP_C57BL6NJ_P0046371 Mlst8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047680.1 MGP_C57BL6NJ_G0024006.1 mouse_genomes_project 17 36389348 36394017 + MGP_C57BL6NJ_P0047680 Neu1 protein_coding protein_coding MGP_C57BL6NJ_T0047681.1 MGP_C57BL6NJ_G0024006.1 mouse_genomes_project 17 36389409 36394049 + Neu1 protein_coding retained_intron MGP_C57BL6NJ_T0047682.1 MGP_C57BL6NJ_G0024006.1 mouse_genomes_project 17 36389958 36390861 + Neu1 protein_coding retained_intron MGP_C57BL6NJ_T0049204.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94231932 94287321 + MGP_C57BL6NJ_P0049204 Msh2 protein_coding protein_coding MGP_C57BL6NJ_T0049205.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94232142 94239312 + Msh2 protein_coding retained_intron MGP_C57BL6NJ_T0049206.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94232163 94268390 + Msh2 protein_coding retained_intron MGP_C57BL6NJ_T0049207.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94232211 94244911 + MGP_C57BL6NJ_P0049207 Msh2 protein_coding protein_coding MGP_C57BL6NJ_T0049208.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94248237 94255883 + Msh2 protein_coding retained_intron MGP_C57BL6NJ_T0049209.1 MGP_C57BL6NJ_G0024510.1 mouse_genomes_project 17 94255720 94279555 + MGP_C57BL6NJ_P0049209 Msh2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007064.1 MGP_C57BL6NJ_G0005815.1 mouse_genomes_project 17 10352401 10360763 + 4732491K20Rik lincRNA lincRNA MGP_C57BL6NJ_T0102970.1 MGP_C57BL6NJ_G0040764.1 mouse_genomes_project 17 39376508 39377435 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013554.1 MGP_C57BL6NJ_G0011599.1 mouse_genomes_project 17 37066689 37076882 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047659.1 MGP_C57BL6NJ_G0024003.1 mouse_genomes_project 17 36333293 36349575 + MGP_C57BL6NJ_P0047659 Zbtb12 protein_coding protein_coding MGP_C57BL6NJ_T0047662.1 MGP_C57BL6NJ_G0024003.1 mouse_genomes_project 17 36348688 36350997 + MGP_C57BL6NJ_P0047662 Zbtb12 protein_coding protein_coding MGP_C57BL6NJ_T0100098.1 MGP_C57BL6NJ_G0038144.1 mouse_genomes_project 17 85945630 85945726 + Gm22215 snRNA snRNA MGP_C57BL6NJ_T0011697.1 MGP_C57BL6NJ_G0009782.1 mouse_genomes_project 17 86135985 86136232 - Gm25706 misc_RNA misc_RNA MGP_C57BL6NJ_T0048829.1 MGP_C57BL6NJ_G0024382.1 mouse_genomes_project 17 70339149 70374010 - MGP_C57BL6NJ_P0048829 Vapa protein_coding protein_coding MGP_C57BL6NJ_T0047484.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35474848 35480625 - MGP_C57BL6NJ_P0047484 Psmb9 protein_coding protein_coding MGP_C57BL6NJ_T0047485.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35474890 35476410 - Psmb9 protein_coding retained_intron MGP_C57BL6NJ_T0047486.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35474893 35480214 - Psmb9 protein_coding retained_intron MGP_C57BL6NJ_T0047487.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35475084 35478649 - MGP_C57BL6NJ_P0047487 Psmb9 protein_coding protein_coding MGP_C57BL6NJ_T0047488.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35476890 35480199 - Psmb9 protein_coding retained_intron MGP_C57BL6NJ_T0047489.1 MGP_C57BL6NJ_G0023967.1 mouse_genomes_project 17 35477142 35480080 - MGP_C57BL6NJ_P0047489 Psmb9 protein_coding protein_coding MGP_C57BL6NJ_T0010391.1 MGP_C57BL6NJ_G0008476.1 mouse_genomes_project 17 16624383 16624451 + Mir125a miRNA miRNA MGP_C57BL6NJ_T0013614.1 MGP_C57BL6NJ_G0011659.1 mouse_genomes_project 17 78480430 78481858 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048117.1 MGP_C57BL6NJ_G0024112.1 mouse_genomes_project 17 39348502 39349444 - MGP_C57BL6NJ_P0048117 Olfr103 protein_coding protein_coding MGP_C57BL6NJ_T0048118.1 MGP_C57BL6NJ_G0024112.1 mouse_genomes_project 17 39348502 39353658 - MGP_C57BL6NJ_P0048118 Olfr103 protein_coding protein_coding MGP_C57BL6NJ_T0010388.1 MGP_C57BL6NJ_G0008473.1 mouse_genomes_project 17 16623759 16623829 + Mir99b miRNA miRNA MGP_C57BL6NJ_T0003920.1 MGP_C57BL6NJ_G0003515.1 mouse_genomes_project 17 47681832 47685536 + Runx2os2 antisense antisense MGP_C57BL6NJ_T0102969.1 MGP_C57BL6NJ_G0040763.1 mouse_genomes_project 17 39304306 39305234 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047616.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285003 36288313 + MGP_C57BL6NJ_P0047616 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047617.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285003 36288360 + MGP_C57BL6NJ_P0047617 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047618.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285003 36287775 + MGP_C57BL6NJ_P0047618 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047619.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285066 36286344 + Dxo protein_coding retained_intron MGP_C57BL6NJ_T0047620.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285232 36285962 + MGP_C57BL6NJ_P0047620 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047621.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285383 36288264 + MGP_C57BL6NJ_P0047621 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047622.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285641 36288265 + MGP_C57BL6NJ_P0047622 Dxo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047623.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36285977 36287810 + MGP_C57BL6NJ_P0047623 Dxo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047624.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36286279 36288264 + MGP_C57BL6NJ_P0047624 Dxo protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047625.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36286308 36288264 + MGP_C57BL6NJ_P0047625 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047626.1 MGP_C57BL6NJ_G0023997.1 mouse_genomes_project 17 36286428 36288250 + MGP_C57BL6NJ_P0047626 Dxo protein_coding protein_coding MGP_C57BL6NJ_T0047432.1 MGP_C57BL6NJ_G0023958.1 mouse_genomes_project 17 35291709 35295598 - MGP_C57BL6NJ_P0047432 Ring1 protein_coding protein_coding MGP_C57BL6NJ_T0047433.1 MGP_C57BL6NJ_G0023958.1 mouse_genomes_project 17 35292001 35294850 - Ring1 protein_coding retained_intron MGP_C57BL6NJ_T0047434.1 MGP_C57BL6NJ_G0023958.1 mouse_genomes_project 17 35295108 35295570 - Ring1 protein_coding retained_intron MGP_C57BL6NJ_T0048359.1 MGP_C57BL6NJ_G0024214.1 mouse_genomes_project 17 49348175 49351289 + MGP_C57BL6NJ_P0048359 Lrrc73 protein_coding protein_coding MGP_C57BL6NJ_T0048175.1 MGP_C57BL6NJ_G0024158.1 mouse_genomes_project 17 43181006 43191195 + MGP_C57BL6NJ_P0048175 Esp8 protein_coding protein_coding MGP_C57BL6NJ_T0048658.1 MGP_C57BL6NJ_G0024311.1 mouse_genomes_project 17 59902177 59910701 - MGP_C57BL6NJ_P0048658 Stap2 protein_coding protein_coding MGP_C57BL6NJ_T0049155.1 MGP_C57BL6NJ_G0024492.1 mouse_genomes_project 17 91428673 91819685 + MGP_C57BL6NJ_P0049155 Camkmt protein_coding protein_coding MGP_C57BL6NJ_T0003876.1 MGP_C57BL6NJ_G0003482.1 mouse_genomes_project 17 24570842 24571339 + Rab26os antisense antisense MGP_C57BL6NJ_T0003877.1 MGP_C57BL6NJ_G0003482.1 mouse_genomes_project 17 24570861 24571338 + Rab26os antisense antisense MGP_C57BL6NJ_T0001112.1 MGP_C57BL6NJ_G0001019.1 mouse_genomes_project 17 9721520 9727988 - TEC TEC MGP_C57BL6NJ_T0013599.1 MGP_C57BL6NJ_G0011644.1 mouse_genomes_project 17 57767959 57768920 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013611.1 MGP_C57BL6NJ_G0011656.1 mouse_genomes_project 17 74314901 74316062 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013628.1 MGP_C57BL6NJ_G0011673.1 mouse_genomes_project 17 101933602 101933777 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048439.1 MGP_C57BL6NJ_G0024244.1 mouse_genomes_project 17 50091781 50177043 - MGP_C57BL6NJ_P0048439 Ubr2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048440.1 MGP_C57BL6NJ_G0024244.1 mouse_genomes_project 17 50091784 50177356 - MGP_C57BL6NJ_P0048440 Ubr2 protein_coding protein_coding MGP_C57BL6NJ_T0048441.1 MGP_C57BL6NJ_G0024244.1 mouse_genomes_project 17 50091784 50177356 - MGP_C57BL6NJ_P0048441 Ubr2 protein_coding protein_coding MGP_C57BL6NJ_T0003872.1 MGP_C57BL6NJ_G0003478.1 mouse_genomes_project 17 12050180 12050796 - Gm16052 antisense antisense MGP_C57BL6NJ_T0048573.1 MGP_C57BL6NJ_G0024279.1 mouse_genomes_project 17 51849096 51852633 - Tspo2 protein_coding retained_intron MGP_C57BL6NJ_T0048574.1 MGP_C57BL6NJ_G0024279.1 mouse_genomes_project 17 51849575 51852663 - MGP_C57BL6NJ_P0048574 Tspo2 protein_coding protein_coding MGP_C57BL6NJ_T0048575.1 MGP_C57BL6NJ_G0024279.1 mouse_genomes_project 17 51849659 51851214 - MGP_C57BL6NJ_P0048575 Tspo2 protein_coding protein_coding MGP_C57BL6NJ_T0048576.1 MGP_C57BL6NJ_G0024279.1 mouse_genomes_project 17 51849708 51851211 - MGP_C57BL6NJ_P0048576 Tspo2 protein_coding protein_coding MGP_C57BL6NJ_T0048577.1 MGP_C57BL6NJ_G0024279.1 mouse_genomes_project 17 51851076 51852658 - Tspo2 protein_coding processed_transcript MGP_C57BL6NJ_T0047859.1 MGP_C57BL6NJ_G0024049.1 mouse_genomes_project 17 37261676 37273836 - protein_coding processed_transcript MGP_C57BL6NJ_T0010421.1 MGP_C57BL6NJ_G0008506.1 mouse_genomes_project 17 36306695 36306759 - Mir6972 miRNA miRNA MGP_C57BL6NJ_T0099356.1 MGP_C57BL6NJ_G0037415.1 mouse_genomes_project 17 67883664 67891880 - 4930405O22Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0099357.1 MGP_C57BL6NJ_G0037415.1 mouse_genomes_project 17 67883897 67891882 - 4930405O22Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0048608.1 MGP_C57BL6NJ_G0024289.1 mouse_genomes_project 17 54253375 54553670 - MGP_C57BL6NJ_P0048608 Tbc1d5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048609.1 MGP_C57BL6NJ_G0024289.1 mouse_genomes_project 17 54253381 54725286 - MGP_C57BL6NJ_P0048609 Tbc1d5 protein_coding protein_coding MGP_C57BL6NJ_T0047677.1 MGP_C57BL6NJ_G0024005.1 mouse_genomes_project 17 36371345 36387248 + Slc44a4 protein_coding retained_intron MGP_C57BL6NJ_T0047678.1 MGP_C57BL6NJ_G0024005.1 mouse_genomes_project 17 36371349 36387225 + MGP_C57BL6NJ_P0047678 Slc44a4 protein_coding protein_coding MGP_C57BL6NJ_T0047679.1 MGP_C57BL6NJ_G0024005.1 mouse_genomes_project 17 36374598 36387305 + MGP_C57BL6NJ_P0047679 Slc44a4 protein_coding protein_coding MGP_C57BL6NJ_T0102937.1 MGP_C57BL6NJ_G0040731.1 mouse_genomes_project 17 36904410 36905394 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047356.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35014915 35022364 - MGP_C57BL6NJ_P0047356 Rps28 protein_coding protein_coding MGP_C57BL6NJ_T0047359.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35020910 35022434 - MGP_C57BL6NJ_P0047359 Rps28 protein_coding protein_coding MGP_C57BL6NJ_T0047360.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35020911 35022416 - MGP_C57BL6NJ_P0047360 Rps28 protein_coding protein_coding MGP_C57BL6NJ_T0047361.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35020924 35022337 - Rps28 protein_coding processed_transcript MGP_C57BL6NJ_T0047362.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35020924 35022434 - MGP_C57BL6NJ_P0047362 Rps28 protein_coding protein_coding MGP_C57BL6NJ_T0047363.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35020926 35022348 - MGP_C57BL6NJ_P0047363 Rps28 protein_coding protein_coding MGP_C57BL6NJ_T0047364.1 MGP_C57BL6NJ_G0023945.1 mouse_genomes_project 17 35021460 35022356 - Rps28 protein_coding retained_intron MGP_C57BL6NJ_T0007112.1 MGP_C57BL6NJ_G0005856.1 mouse_genomes_project 17 37697075 37698950 + Gm20508 lincRNA lincRNA MGP_C57BL6NJ_T0102902.1 MGP_C57BL6NJ_G0040696.1 mouse_genomes_project 17 19012424 19056416 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100071.1 MGP_C57BL6NJ_G0038117.1 mouse_genomes_project 17 25834374 25834481 - Gm22645 snRNA snRNA MGP_C57BL6NJ_T0099358.1 MGP_C57BL6NJ_G0037416.1 mouse_genomes_project 17 78958929 78963530 - D630014O11Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0046534.1 MGP_C57BL6NJ_G0023748.1 mouse_genomes_project 17 25269150 25278603 + MGP_C57BL6NJ_P0046534 Ccdc154 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046535.1 MGP_C57BL6NJ_G0023748.1 mouse_genomes_project 17 25269150 25278603 + MGP_C57BL6NJ_P0046535 Ccdc154 protein_coding protein_coding MGP_C57BL6NJ_T0046536.1 MGP_C57BL6NJ_G0023748.1 mouse_genomes_project 17 25269153 25278601 + MGP_C57BL6NJ_P0046536 Ccdc154 protein_coding protein_coding MGP_C57BL6NJ_T0046537.1 MGP_C57BL6NJ_G0023748.1 mouse_genomes_project 17 25269531 25278572 + MGP_C57BL6NJ_P0046537 Ccdc154 protein_coding protein_coding MGP_C57BL6NJ_T0048014.1 MGP_C57BL6NJ_G0024073.1 mouse_genomes_project 17 38067922 38069114 - MGP_C57BL6NJ_P0048014 protein_coding protein_coding MGP_C57BL6NJ_T0045987.1 MGP_C57BL6NJ_G0023562.1 mouse_genomes_project 17 10943756 10945565 + MGP_C57BL6NJ_P0045987 Mrgprh protein_coding protein_coding MGP_C57BL6NJ_T0003929.1 MGP_C57BL6NJ_G0003522.1 mouse_genomes_project 17 53388760 53389986 - Gm16554 antisense antisense MGP_C57BL6NJ_T0048208.1 MGP_C57BL6NJ_G0024180.1 mouse_genomes_project 17 46403046 46413812 - MGP_C57BL6NJ_P0048208 Ankrd66 protein_coding protein_coding MGP_C57BL6NJ_T0102449.1 MGP_C57BL6NJ_G0040346.1 mouse_genomes_project 17 101926937 101952440 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102450.1 MGP_C57BL6NJ_G0040346.1 mouse_genomes_project 17 101926949 101933921 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102451.1 MGP_C57BL6NJ_G0040346.1 mouse_genomes_project 17 101926975 101952443 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102452.1 MGP_C57BL6NJ_G0040346.1 mouse_genomes_project 17 101929332 101952337 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0047791.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36635611 36651305 - MGP_C57BL6NJ_P0047791 Prrc2a protein_coding protein_coding MGP_C57BL6NJ_T0047792.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36635623 36649377 - MGP_C57BL6NJ_P0047792 Prrc2a protein_coding protein_coding MGP_C57BL6NJ_T0047793.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36635712 36636902 - Prrc2a protein_coding retained_intron MGP_C57BL6NJ_T0047794.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36636868 36637488 - Prrc2a protein_coding retained_intron MGP_C57BL6NJ_T0047795.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36638608 36639667 - Prrc2a protein_coding retained_intron MGP_C57BL6NJ_T0047796.1 MGP_C57BL6NJ_G0024029.1 mouse_genomes_project 17 36643540 36651243 - Prrc2a protein_coding processed_transcript MGP_C57BL6NJ_T0046414.1 MGP_C57BL6NJ_G0023721.1 mouse_genomes_project 17 24725909 24738233 + MGP_C57BL6NJ_P0046414 Zfp598 protein_coding protein_coding MGP_C57BL6NJ_T0047742.1 MGP_C57BL6NJ_G0024019.1 mouse_genomes_project 17 36553649 36555042 + MGP_C57BL6NJ_P0047742 Ly6g6e protein_coding protein_coding MGP_C57BL6NJ_T0047743.1 MGP_C57BL6NJ_G0024019.1 mouse_genomes_project 17 36553678 36555298 + MGP_C57BL6NJ_P0047743 Ly6g6e protein_coding protein_coding MGP_C57BL6NJ_T0047744.1 MGP_C57BL6NJ_G0024019.1 mouse_genomes_project 17 36553684 36555552 + MGP_C57BL6NJ_P0047744 Ly6g6e protein_coding protein_coding MGP_C57BL6NJ_T0047745.1 MGP_C57BL6NJ_G0024019.1 mouse_genomes_project 17 36553902 36555033 + MGP_C57BL6NJ_P0047745 Ly6g6e protein_coding protein_coding MGP_C57BL6NJ_T0046036.1 MGP_C57BL6NJ_G0023573.1 mouse_genomes_project 17 12670871 12801115 + MGP_C57BL6NJ_P0046036 Smoc2 protein_coding protein_coding MGP_C57BL6NJ_T0101362.1 MGP_C57BL6NJ_G0039408.1 mouse_genomes_project 17 85151 85278 - Gm22598 snoRNA snoRNA MGP_C57BL6NJ_T0018028.1 MGP_C57BL6NJ_G0015741.1 mouse_genomes_project 17 36008920 36026387 - Gm20460 processed_transcript processed_transcript MGP_C57BL6NJ_T0048201.1 MGP_C57BL6NJ_G0024176.1 mouse_genomes_project 17 45835951 45913660 + MGP_C57BL6NJ_P0048201 Tnfrsf21 protein_coding protein_coding MGP_C57BL6NJ_T0102439.1 MGP_C57BL6NJ_G0040342.1 mouse_genomes_project 17 32993519 33008501 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102440.1 MGP_C57BL6NJ_G0040342.1 mouse_genomes_project 17 32993985 33018579 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102441.1 MGP_C57BL6NJ_G0040342.1 mouse_genomes_project 17 32996233 33022871 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0046362.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24468137 24470308 - Dnase1l2 protein_coding retained_intron MGP_C57BL6NJ_T0046363.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24468143 24471213 - MGP_C57BL6NJ_P0046363 Dnase1l2 protein_coding protein_coding MGP_C57BL6NJ_T0046364.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24468621 24471192 - MGP_C57BL6NJ_P0046364 Dnase1l2 protein_coding protein_coding MGP_C57BL6NJ_T0046365.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24468830 24470260 - MGP_C57BL6NJ_P0046365 Dnase1l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046366.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24469577 24470809 - MGP_C57BL6NJ_P0046366 Dnase1l2 protein_coding protein_coding MGP_C57BL6NJ_T0046367.1 MGP_C57BL6NJ_G0023708.1 mouse_genomes_project 17 24469775 24471212 - MGP_C57BL6NJ_P0046367 Dnase1l2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013627.1 MGP_C57BL6NJ_G0011672.1 mouse_genomes_project 17 99504752 99507549 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003939.1 MGP_C57BL6NJ_G0003530.1 mouse_genomes_project 17 76890587 76891556 - Gm15641 antisense antisense MGP_C57BL6NJ_T0048677.1 MGP_C57BL6NJ_G0024316.1 mouse_genomes_project 17 60008908 60030992 + MGP_C57BL6NJ_P0048677 Hdgfrp2 protein_coding protein_coding MGP_C57BL6NJ_T0048431.1 MGP_C57BL6NJ_G0024237.1 mouse_genomes_project 17 49896610 49904660 - MGP_C57BL6NJ_P0048431 Ptcra protein_coding protein_coding MGP_C57BL6NJ_T0046125.1 MGP_C57BL6NJ_G0023603.1 mouse_genomes_project 17 17179163 17207019 + MGP_C57BL6NJ_P0046125 Vmn2r93 protein_coding protein_coding MGP_C57BL6NJ_T0049051.1 MGP_C57BL6NJ_G0024444.1 mouse_genomes_project 17 84565192 84650351 - MGP_C57BL6NJ_P0049051 Heatr5b protein_coding protein_coding MGP_C57BL6NJ_T0046298.1 MGP_C57BL6NJ_G0023690.1 mouse_genomes_project 17 23913273 23917637 - MGP_C57BL6NJ_P0046298 Sbpl protein_coding protein_coding MGP_C57BL6NJ_T0047593.1 MGP_C57BL6NJ_G0023990.1 mouse_genomes_project 17 36034885 36038484 + MGP_C57BL6NJ_P0047593 Prrt1 protein_coding protein_coding MGP_C57BL6NJ_T0047594.1 MGP_C57BL6NJ_G0023990.1 mouse_genomes_project 17 36036756 36037755 + Prrt1 protein_coding retained_intron MGP_C57BL6NJ_T0048262.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617879 48632972 - MGP_C57BL6NJ_P0048262 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048263.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617879 48626206 - MGP_C57BL6NJ_P0048263 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048264.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617881 48627271 - MGP_C57BL6NJ_P0048264 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048265.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617882 48629201 - MGP_C57BL6NJ_P0048265 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048266.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617882 48629534 - MGP_C57BL6NJ_P0048266 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048267.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48617882 48629203 - MGP_C57BL6NJ_P0048267 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048268.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48618221 48626128 - MGP_C57BL6NJ_P0048268 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048269.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48618350 48624942 - MGP_C57BL6NJ_P0048269 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048270.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48618897 48621421 - Slc29a1 protein_coding processed_transcript MGP_C57BL6NJ_T0048271.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48621045 48629133 - MGP_C57BL6NJ_P0048271 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048272.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48621046 48629233 - MGP_C57BL6NJ_P0048272 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048273.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48621199 48626471 - Slc29a1 protein_coding retained_intron MGP_C57BL6NJ_T0048274.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48621547 48622791 - Slc29a1 protein_coding retained_intron MGP_C57BL6NJ_T0048275.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48621886 48629182 - Slc29a1 protein_coding retained_intron MGP_C57BL6NJ_T0048276.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622096 48629146 - Slc29a1 protein_coding retained_intron MGP_C57BL6NJ_T0048277.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622096 48632973 - MGP_C57BL6NJ_P0048277 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048278.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622196 48629483 - MGP_C57BL6NJ_P0048278 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048279.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622202 48627265 - MGP_C57BL6NJ_P0048279 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048280.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622376 48632975 - MGP_C57BL6NJ_P0048280 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048281.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622401 48629187 - MGP_C57BL6NJ_P0048281 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048282.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622451 48629133 - MGP_C57BL6NJ_P0048282 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048283.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622636 48629172 - MGP_C57BL6NJ_P0048283 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048284.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622702 48629174 - MGP_C57BL6NJ_P0048284 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048285.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622748 48629588 - MGP_C57BL6NJ_P0048285 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0048286.1 MGP_C57BL6NJ_G0024199.1 mouse_genomes_project 17 48622791 48630713 - MGP_C57BL6NJ_P0048286 Slc29a1 protein_coding protein_coding MGP_C57BL6NJ_T0013531.1 MGP_C57BL6NJ_G0011576.1 mouse_genomes_project 17 11045577 11046000 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102946.1 MGP_C57BL6NJ_G0040740.1 mouse_genomes_project 17 38005175 38006119 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047054.1 MGP_C57BL6NJ_G0023865.1 mouse_genomes_project 17 29910740 29925752 - MGP_C57BL6NJ_P0047054 Ppil1 protein_coding protein_coding MGP_C57BL6NJ_T0047055.1 MGP_C57BL6NJ_G0023865.1 mouse_genomes_project 17 29911162 29918501 - Ppil1 protein_coding retained_intron MGP_C57BL6NJ_T0047056.1 MGP_C57BL6NJ_G0023865.1 mouse_genomes_project 17 29911201 29925506 - MGP_C57BL6NJ_P0047056 Ppil1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047057.1 MGP_C57BL6NJ_G0023865.1 mouse_genomes_project 17 29922710 29925532 - Ppil1 protein_coding processed_transcript MGP_C57BL6NJ_T0102978.1 MGP_C57BL6NJ_G0040772.1 mouse_genomes_project 17 40094194 40096944 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048057.1 MGP_C57BL6NJ_G0024089.1 mouse_genomes_project 17 38846883 38858800 + MGP_C57BL6NJ_P0048057 Trim31 protein_coding protein_coding MGP_C57BL6NJ_T0010432.1 MGP_C57BL6NJ_G0008517.1 mouse_genomes_project 17 49675377 49675440 - Mir6976 miRNA miRNA MGP_C57BL6NJ_T0048353.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49342096 49346554 + MGP_C57BL6NJ_P0048353 Yipf3 protein_coding protein_coding MGP_C57BL6NJ_T0048354.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49342141 49345505 + MGP_C57BL6NJ_P0048354 Yipf3 protein_coding protein_coding MGP_C57BL6NJ_T0048355.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49342161 49346018 + Yipf3 protein_coding retained_intron MGP_C57BL6NJ_T0048356.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49343045 49345921 + MGP_C57BL6NJ_P0048356 Yipf3 protein_coding protein_coding MGP_C57BL6NJ_T0048357.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49344105 49345010 + Yipf3 protein_coding processed_transcript MGP_C57BL6NJ_T0048358.1 MGP_C57BL6NJ_G0024213.1 mouse_genomes_project 17 49345357 49346034 + Yipf3 protein_coding processed_transcript MGP_C57BL6NJ_T0048029.1 MGP_C57BL6NJ_G0024077.1 mouse_genomes_project 17 38160928 38232836 - MGP_C57BL6NJ_P0048029 protein_coding protein_coding MGP_C57BL6NJ_T0048015.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076297 38078509 - MGP_C57BL6NJ_P0048015 Rpp21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048016.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076319 38078496 - Rpp21 protein_coding retained_intron MGP_C57BL6NJ_T0048017.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076319 38078722 - MGP_C57BL6NJ_P0048017 Rpp21 protein_coding protein_coding MGP_C57BL6NJ_T0048018.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076325 38077003 - Rpp21 protein_coding retained_intron MGP_C57BL6NJ_T0048019.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076364 38078263 - MGP_C57BL6NJ_P0048019 Rpp21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048020.1 MGP_C57BL6NJ_G0024074.1 mouse_genomes_project 17 38076596 38078508 - Rpp21 protein_coding retained_intron MGP_C57BL6NJ_T0013592.1 MGP_C57BL6NJ_G0011637.1 mouse_genomes_project 17 57295367 57295850 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046613.1 MGP_C57BL6NJ_G0023769.1 mouse_genomes_project 17 25877708 25894340 + MGP_C57BL6NJ_P0046613 Mslnl protein_coding protein_coding MGP_C57BL6NJ_T0048984.1 MGP_C57BL6NJ_G0024420.1 mouse_genomes_project 17 77057088 77846305 - MGP_C57BL6NJ_P0048984 Alk protein_coding protein_coding MGP_C57BL6NJ_T0007113.1 MGP_C57BL6NJ_G0005857.1 mouse_genomes_project 17 37913029 37947635 + lincRNA lincRNA MGP_C57BL6NJ_T0007114.1 MGP_C57BL6NJ_G0005857.1 mouse_genomes_project 17 37913481 37946834 + lincRNA lincRNA MGP_C57BL6NJ_T0047577.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36007785 36009757 - Egfl8 protein_coding retained_intron MGP_C57BL6NJ_T0047578.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36007786 36010408 - MGP_C57BL6NJ_P0047578 Egfl8 protein_coding protein_coding MGP_C57BL6NJ_T0047579.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36007790 36010408 - MGP_C57BL6NJ_P0047579 Egfl8 protein_coding protein_coding MGP_C57BL6NJ_T0047580.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36008213 36010225 - MGP_C57BL6NJ_P0047580 Egfl8 protein_coding protein_coding MGP_C57BL6NJ_T0047581.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36008600 36010393 - Egfl8 protein_coding retained_intron MGP_C57BL6NJ_T0047582.1 MGP_C57BL6NJ_G0023988.1 mouse_genomes_project 17 36009205 36009758 - Egfl8 protein_coding retained_intron MGP_C57BL6NJ_T0013616.1 MGP_C57BL6NJ_G0011661.1 mouse_genomes_project 17 80654657 80655236 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048456.1 MGP_C57BL6NJ_G0024250.1 mouse_genomes_project 17 50624226 50649411 - MGP_C57BL6NJ_P0048456 1700001C19Rik protein_coding protein_coding MGP_C57BL6NJ_T0048457.1 MGP_C57BL6NJ_G0024250.1 mouse_genomes_project 17 50624867 50633181 - MGP_C57BL6NJ_P0048457 1700001C19Rik protein_coding protein_coding MGP_C57BL6NJ_T0048458.1 MGP_C57BL6NJ_G0024250.1 mouse_genomes_project 17 50624875 50626204 - 1700001C19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0048459.1 MGP_C57BL6NJ_G0024250.1 mouse_genomes_project 17 50625120 50649412 - 1700001C19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0010440.1 MGP_C57BL6NJ_G0008525.1 mouse_genomes_project 17 69099304 69099406 + Mir6420 miRNA miRNA MGP_C57BL6NJ_T0048956.1 MGP_C57BL6NJ_G0024411.1 mouse_genomes_project 17 76373697 76446063 - MGP_C57BL6NJ_P0048956 Emilin2 protein_coding protein_coding MGP_C57BL6NJ_T0046370.1 MGP_C57BL6NJ_G0023710.1 mouse_genomes_project 17 24500873 24501992 + MGP_C57BL6NJ_P0046370 Pgp protein_coding protein_coding MGP_C57BL6NJ_T0049000.1 MGP_C57BL6NJ_G0024429.1 mouse_genomes_project 17 79571494 79670107 - MGP_C57BL6NJ_P0049000 Memo1 protein_coding protein_coding MGP_C57BL6NJ_T0049064.1 MGP_C57BL6NJ_G0024449.1 mouse_genomes_project 17 84741303 84759362 - MGP_C57BL6NJ_P0049064 Cebpz protein_coding protein_coding MGP_C57BL6NJ_T0007162.1 MGP_C57BL6NJ_G0005889.1 mouse_genomes_project 17 94027404 94043112 + Gm28676 lincRNA lincRNA MGP_C57BL6NJ_T0046456.1 MGP_C57BL6NJ_G0023735.1 mouse_genomes_project 17 24970920 24974660 - MGP_C57BL6NJ_P0046456 Nubp2 protein_coding protein_coding MGP_C57BL6NJ_T0047352.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35004653 35018807 + MGP_C57BL6NJ_P0047352 Kank3 protein_coding protein_coding MGP_C57BL6NJ_T0047353.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35004656 35018806 + MGP_C57BL6NJ_P0047353 Kank3 protein_coding protein_coding MGP_C57BL6NJ_T0047354.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35004656 35018803 + MGP_C57BL6NJ_P0047354 Kank3 protein_coding protein_coding MGP_C57BL6NJ_T0047355.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35004662 35018047 + Kank3 protein_coding retained_intron MGP_C57BL6NJ_T0047357.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35017718 35018164 + Kank3 protein_coding retained_intron MGP_C57BL6NJ_T0047358.1 MGP_C57BL6NJ_G0023944.1 mouse_genomes_project 17 35018031 35018806 + MGP_C57BL6NJ_P0047358 Kank3 protein_coding protein_coding MGP_C57BL6NJ_T0048477.1 MGP_C57BL6NJ_G0024254.1 mouse_genomes_project 17 50841287 50853889 - MGP_C57BL6NJ_P0048477 Bysl protein_coding protein_coding MGP_C57BL6NJ_T0049211.1 MGP_C57BL6NJ_G0024512.1 mouse_genomes_project 17 94524760 94525177 + MGP_C57BL6NJ_P0049211 Rpl36-ps4 protein_coding protein_coding MGP_C57BL6NJ_T0048690.1 MGP_C57BL6NJ_G0024325.1 mouse_genomes_project 17 60199829 60202895 + MGP_C57BL6NJ_P0048690 protein_coding protein_coding MGP_C57BL6NJ_T0048557.1 MGP_C57BL6NJ_G0024275.1 mouse_genomes_project 17 51752253 51761398 + MGP_C57BL6NJ_P0048557 Treml1 protein_coding protein_coding MGP_C57BL6NJ_T0046194.1 MGP_C57BL6NJ_G0023650.1 mouse_genomes_project 17 21797221 21921562 - MGP_C57BL6NJ_P0046194 Zfp994 protein_coding protein_coding MGP_C57BL6NJ_T0047272.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33938857 33961336 - MGP_C57BL6NJ_P0047272 Cyp4f13 protein_coding protein_coding MGP_C57BL6NJ_T0047273.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33938870 33961313 - MGP_C57BL6NJ_P0047273 Cyp4f13 protein_coding protein_coding MGP_C57BL6NJ_T0047274.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33938885 33961300 - MGP_C57BL6NJ_P0047274 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047275.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33939501 33940055 - Cyp4f13 protein_coding retained_intron MGP_C57BL6NJ_T0047276.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33946433 33961336 - MGP_C57BL6NJ_P0047276 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047277.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33946645 33961294 - MGP_C57BL6NJ_P0047277 Cyp4f13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047278.1 MGP_C57BL6NJ_G0023922.1 mouse_genomes_project 17 33953759 33961325 - Cyp4f13 protein_coding retained_intron MGP_C57BL6NJ_T0013563.1 MGP_C57BL6NJ_G0011608.1 mouse_genomes_project 17 38044683 38045241 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102957.1 MGP_C57BL6NJ_G0040751.1 mouse_genomes_project 17 38493129 38493276 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049169.1 MGP_C57BL6NJ_G0024499.1 mouse_genomes_project 17 93392331 93397619 + MGP_C57BL6NJ_P0049169 Tmem247 protein_coding protein_coding MGP_C57BL6NJ_T0049170.1 MGP_C57BL6NJ_G0024499.1 mouse_genomes_project 17 93393660 93397626 + MGP_C57BL6NJ_P0049170 Tmem247 protein_coding protein_coding MGP_C57BL6NJ_T0049092.1 MGP_C57BL6NJ_G0024461.1 mouse_genomes_project 17 86147471 86159649 + MGP_C57BL6NJ_P0049092 Ttc39d protein_coding protein_coding MGP_C57BL6NJ_T0049093.1 MGP_C57BL6NJ_G0024461.1 mouse_genomes_project 17 86157626 86159648 + MGP_C57BL6NJ_P0049093 Ttc39d protein_coding protein_coding MGP_C57BL6NJ_T0048106.1 MGP_C57BL6NJ_G0024101.1 mouse_genomes_project 17 39125520 39126565 - MGP_C57BL6NJ_P0048106 Olfr93 protein_coding protein_coding MGP_C57BL6NJ_T0048485.1 MGP_C57BL6NJ_G0024257.1 mouse_genomes_project 17 50876385 50940583 + MGP_C57BL6NJ_P0048485 Usp49 protein_coding protein_coding MGP_C57BL6NJ_T0048486.1 MGP_C57BL6NJ_G0024257.1 mouse_genomes_project 17 50898635 50925986 + MGP_C57BL6NJ_P0048486 Usp49 protein_coding protein_coding MGP_C57BL6NJ_T0048487.1 MGP_C57BL6NJ_G0024257.1 mouse_genomes_project 17 50926521 50934858 + MGP_C57BL6NJ_P0048487 Usp49 protein_coding protein_coding MGP_C57BL6NJ_T0048488.1 MGP_C57BL6NJ_G0024257.1 mouse_genomes_project 17 50927102 50934530 + MGP_C57BL6NJ_P0048488 Usp49 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013568.1 MGP_C57BL6NJ_G0011613.1 mouse_genomes_project 17 38346618 38347578 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003892.1 MGP_C57BL6NJ_G0003494.1 mouse_genomes_project 17 30261303 30281467 - Tbc1d22bos antisense antisense MGP_C57BL6NJ_T0003893.1 MGP_C57BL6NJ_G0003494.1 mouse_genomes_project 17 30270992 30281441 - Tbc1d22bos antisense antisense MGP_C57BL6NJ_T0047003.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29390113 29431567 + MGP_C57BL6NJ_P0047003 Brpf3 protein_coding protein_coding MGP_C57BL6NJ_T0047004.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29390852 29395377 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047005.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29398716 29407190 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047006.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29399608 29431514 + Brpf3 protein_coding retained_intron MGP_C57BL6NJ_T0047007.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29403457 29407576 + Brpf3 protein_coding retained_intron MGP_C57BL6NJ_T0047008.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29403610 29407814 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047009.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29412655 29428290 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047010.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29413610 29428328 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047011.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29413690 29431562 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0047012.1 MGP_C57BL6NJ_G0023855.1 mouse_genomes_project 17 29418098 29428383 + Brpf3 protein_coding processed_transcript MGP_C57BL6NJ_T0003932.1 MGP_C57BL6NJ_G0003525.1 mouse_genomes_project 17 63124422 63141186 + Nudt12os antisense antisense MGP_C57BL6NJ_T0003933.1 MGP_C57BL6NJ_G0003525.1 mouse_genomes_project 17 63124446 63154960 + Nudt12os antisense antisense MGP_C57BL6NJ_T0003934.1 MGP_C57BL6NJ_G0003525.1 mouse_genomes_project 17 63146361 63154708 + Nudt12os antisense antisense MGP_C57BL6NJ_T0099037.1 MGP_C57BL6NJ_G0037101.1 mouse_genomes_project 17 3477683 3477805 + n-R5s26 rRNA rRNA MGP_C57BL6NJ_T0048462.1 MGP_C57BL6NJ_G0024252.1 mouse_genomes_project 17 50708666 50726954 - MGP_C57BL6NJ_P0048462 Taf8 protein_coding protein_coding MGP_C57BL6NJ_T0013518.1 MGP_C57BL6NJ_G0011563.1 mouse_genomes_project 17 2361023 2364459 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046174.1 MGP_C57BL6NJ_G0023643.1 mouse_genomes_project 17 21186507 21204416 + MGP_C57BL6NJ_P0046174 Zfp760 protein_coding protein_coding MGP_C57BL6NJ_T0047015.1 MGP_C57BL6NJ_G0023857.1 mouse_genomes_project 17 29500178 29522593 - MGP_C57BL6NJ_P0047015 4930539E08Rik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047016.1 MGP_C57BL6NJ_G0023857.1 mouse_genomes_project 17 29500191 29522684 - MGP_C57BL6NJ_P0047016 4930539E08Rik protein_coding protein_coding MGP_C57BL6NJ_T0046688.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26037395 26085223 - MGP_C57BL6NJ_P0046688 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0046689.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26037395 26085213 - MGP_C57BL6NJ_P0046689 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0046690.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26037395 26085285 - MGP_C57BL6NJ_P0046690 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0046691.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26037395 26085127 - MGP_C57BL6NJ_P0046691 Rab40c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046692.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26037398 26079203 - Rab40c protein_coding processed_transcript MGP_C57BL6NJ_T0046693.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26038909 26085077 - MGP_C57BL6NJ_P0046693 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0046694.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26038920 26085298 - MGP_C57BL6NJ_P0046694 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0046695.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26040044 26085261 - Rab40c protein_coding processed_transcript MGP_C57BL6NJ_T0046696.1 MGP_C57BL6NJ_G0023787.1 mouse_genomes_project 17 26040363 26085282 - MGP_C57BL6NJ_P0046696 Rab40c protein_coding protein_coding MGP_C57BL6NJ_T0045853.1 MGP_C57BL6NJ_G0023525.1 mouse_genomes_project 17 3147370 3240613 + MGP_C57BL6NJ_P0045853 Snx9 protein_coding protein_coding MGP_C57BL6NJ_T0046128.1 MGP_C57BL6NJ_G0023606.1 mouse_genomes_project 17 18475013 18513370 + MGP_C57BL6NJ_P0046128 Vmn2r99 protein_coding protein_coding MGP_C57BL6NJ_T0099251.1 MGP_C57BL6NJ_G0037315.1 mouse_genomes_project 17 5793328 5793416 + Gm22416 scaRNA scaRNA MGP_C57BL6NJ_T0010396.1 MGP_C57BL6NJ_G0008481.1 mouse_genomes_project 17 24643456 24643550 + Gm24589 miRNA miRNA MGP_C57BL6NJ_T0047127.1 MGP_C57BL6NJ_G0023883.1 mouse_genomes_project 17 31693622 31730854 + MGP_C57BL6NJ_P0047127 Glp1r protein_coding protein_coding MGP_C57BL6NJ_T0046631.1 MGP_C57BL6NJ_G0023774.1 mouse_genomes_project 17 25939585 25941421 - MGP_C57BL6NJ_P0046631 Fam173a protein_coding protein_coding MGP_C57BL6NJ_T0013625.1 MGP_C57BL6NJ_G0011670.1 mouse_genomes_project 17 97629696 97630937 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102923.1 MGP_C57BL6NJ_G0040717.1 mouse_genomes_project 17 35064941 35067868 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101385.1 MGP_C57BL6NJ_G0039431.1 mouse_genomes_project 17 76814842 76814920 + Snord53 snoRNA snoRNA MGP_C57BL6NJ_T0046224.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486035 23500897 + MGP_C57BL6NJ_P0046224 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046225.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486035 23500890 + MGP_C57BL6NJ_P0046225 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046226.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486035 23500890 + MGP_C57BL6NJ_P0046226 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046227.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486041 23500700 + MGP_C57BL6NJ_P0046227 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046228.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486041 23500700 + MGP_C57BL6NJ_P0046228 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046229.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23486120 23499579 + MGP_C57BL6NJ_P0046229 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046230.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23493217 23494907 + Zscan10 protein_coding retained_intron MGP_C57BL6NJ_T0046231.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23493241 23499575 + MGP_C57BL6NJ_P0046231 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046232.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23493250 23499575 + MGP_C57BL6NJ_P0046232 Zscan10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046233.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23493250 23499576 + MGP_C57BL6NJ_P0046233 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046234.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23493251 23499576 + MGP_C57BL6NJ_P0046234 Zscan10 protein_coding protein_coding MGP_C57BL6NJ_T0046235.1 MGP_C57BL6NJ_G0023666.1 mouse_genomes_project 17 23495226 23499575 + Zscan10 protein_coding retained_intron MGP_C57BL6NJ_T0013528.1 MGP_C57BL6NJ_G0011573.1 mouse_genomes_project 17 10225596 10226132 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046259.1 MGP_C57BL6NJ_G0023676.1 mouse_genomes_project 17 23641430 23645575 - MGP_C57BL6NJ_P0046259 Paqr4 protein_coding protein_coding MGP_C57BL6NJ_T0046077.1 MGP_C57BL6NJ_G0023585.1 mouse_genomes_project 17 13971482 13981198 - MGP_C57BL6NJ_P0046077 Pdcd2 protein_coding protein_coding MGP_C57BL6NJ_T0046078.1 MGP_C57BL6NJ_G0023585.1 mouse_genomes_project 17 13973849 13981218 - MGP_C57BL6NJ_P0046078 Pdcd2 protein_coding protein_coding MGP_C57BL6NJ_T0046079.1 MGP_C57BL6NJ_G0023585.1 mouse_genomes_project 17 13973867 13974418 - Pdcd2 protein_coding retained_intron MGP_C57BL6NJ_T0046080.1 MGP_C57BL6NJ_G0023585.1 mouse_genomes_project 17 13974977 13981001 - Pdcd2 protein_coding retained_intron MGP_C57BL6NJ_T0046081.1 MGP_C57BL6NJ_G0023585.1 mouse_genomes_project 17 13975065 13980903 - Pdcd2 protein_coding retained_intron MGP_C57BL6NJ_T0046862.1 MGP_C57BL6NJ_G0023827.1 mouse_genomes_project 17 27988789 27995134 - MGP_C57BL6NJ_P0046862 AI413582 protein_coding protein_coding MGP_C57BL6NJ_T0046863.1 MGP_C57BL6NJ_G0023827.1 mouse_genomes_project 17 27988894 27995110 - MGP_C57BL6NJ_P0046863 AI413582 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046864.1 MGP_C57BL6NJ_G0023827.1 mouse_genomes_project 17 27988896 27995151 - AI413582 protein_coding retained_intron MGP_C57BL6NJ_T0046865.1 MGP_C57BL6NJ_G0023827.1 mouse_genomes_project 17 27994083 27995069 - AI413582 protein_coding processed_transcript MGP_C57BL6NJ_T0046979.1 MGP_C57BL6NJ_G0023847.1 mouse_genomes_project 17 29075201 29088109 + MGP_C57BL6NJ_P0046979 Armc12 protein_coding protein_coding MGP_C57BL6NJ_T0047898.1 MGP_C57BL6NJ_G0024054.1 mouse_genomes_project 17 37487769 37489009 + MGP_C57BL6NJ_P0047898 Ier3 protein_coding protein_coding MGP_C57BL6NJ_T0046114.1 MGP_C57BL6NJ_G0023594.1 mouse_genomes_project 17 16671338 16679037 - MGP_C57BL6NJ_P0046114 Fpr1 protein_coding protein_coding MGP_C57BL6NJ_T0046126.1 MGP_C57BL6NJ_G0023604.1 mouse_genomes_project 17 17316989 17353441 + MGP_C57BL6NJ_P0046126 Vmn2r95 protein_coding protein_coding MGP_C57BL6NJ_T0048832.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554115 70576491 + MGP_C57BL6NJ_P0048832 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048833.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554322 70588101 + MGP_C57BL6NJ_P0048833 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048834.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554898 70588327 + MGP_C57BL6NJ_P0048834 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048835.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554923 70619823 + MGP_C57BL6NJ_P0048835 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048836.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554923 70619827 + MGP_C57BL6NJ_P0048836 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048837.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70554923 70619822 + MGP_C57BL6NJ_P0048837 Ppp4r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048838.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70572628 70585257 + Ppp4r1 protein_coding processed_transcript MGP_C57BL6NJ_T0048839.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70575323 70585230 + Ppp4r1 protein_coding retained_intron MGP_C57BL6NJ_T0048840.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70591635 70607864 + Ppp4r1 protein_coding processed_transcript MGP_C57BL6NJ_T0048841.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70597015 70619757 + Ppp4r1 protein_coding processed_transcript MGP_C57BL6NJ_T0048842.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70601401 70610050 + MGP_C57BL6NJ_P0048842 Ppp4r1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048843.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70605816 70609986 + Ppp4r1 protein_coding retained_intron MGP_C57BL6NJ_T0048844.1 MGP_C57BL6NJ_G0024385.1 mouse_genomes_project 17 70615790 70616882 + MGP_C57BL6NJ_P0048844 Ppp4r1 protein_coding protein_coding MGP_C57BL6NJ_T0048801.1 MGP_C57BL6NJ_G0024371.1 mouse_genomes_project 17 61835220 62516140 + MGP_C57BL6NJ_P0048801 Cntnap5c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048802.1 MGP_C57BL6NJ_G0024371.1 mouse_genomes_project 17 61835220 62516140 + MGP_C57BL6NJ_P0048802 Cntnap5c protein_coding protein_coding MGP_C57BL6NJ_T0099040.1 MGP_C57BL6NJ_G0037104.1 mouse_genomes_project 17 47607159 47607278 - n-R5s27 rRNA rRNA MGP_C57BL6NJ_T0011703.1 MGP_C57BL6NJ_G0009788.1 mouse_genomes_project 17 91996499 91996698 + Gm27502 misc_RNA misc_RNA MGP_C57BL6NJ_T0046349.1 MGP_C57BL6NJ_G0023703.1 mouse_genomes_project 17 24266028 24358064 - MGP_C57BL6NJ_P0046349 Abca17 protein_coding protein_coding MGP_C57BL6NJ_T0046350.1 MGP_C57BL6NJ_G0023703.1 mouse_genomes_project 17 24266048 24354295 - MGP_C57BL6NJ_P0046350 Abca17 protein_coding protein_coding MGP_C57BL6NJ_T0048122.1 MGP_C57BL6NJ_G0024116.1 mouse_genomes_project 17 39504761 39507462 - MGP_C57BL6NJ_P0048122 H2-M2 protein_coding protein_coding MGP_C57BL6NJ_T0048123.1 MGP_C57BL6NJ_G0024116.1 mouse_genomes_project 17 39504893 39507463 - MGP_C57BL6NJ_P0048123 H2-M2 protein_coding protein_coding MGP_C57BL6NJ_T0013516.1 MGP_C57BL6NJ_G0011561.1 mouse_genomes_project 17 66441 66876 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046504.1 MGP_C57BL6NJ_G0023742.1 mouse_genomes_project 17 25051237 25107845 - MGP_C57BL6NJ_P0046504 Cramp1l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003907.1 MGP_C57BL6NJ_G0003505.1 mouse_genomes_project 17 37141059 37143910 - antisense antisense MGP_C57BL6NJ_T0047934.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37566533 37575953 - MGP_C57BL6NJ_P0047934 2310061I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0047935.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37566543 37574004 - MGP_C57BL6NJ_P0047935 2310061I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0047936.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37566691 37574611 - MGP_C57BL6NJ_P0047936 2310061I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0047937.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37573734 37575764 - MGP_C57BL6NJ_P0047937 2310061I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0047938.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37574461 37575299 - 2310061I04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0047939.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37574610 37575794 - MGP_C57BL6NJ_P0047939 2310061I04Rik protein_coding protein_coding MGP_C57BL6NJ_T0047940.1 MGP_C57BL6NJ_G0024061.1 mouse_genomes_project 17 37574963 37576003 - 2310061I04Rik protein_coding processed_transcript MGP_C57BL6NJ_T0048863.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71168415 71289031 - MGP_C57BL6NJ_P0048863 Mtcl1 protein_coding protein_coding MGP_C57BL6NJ_T0048864.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71168419 71289031 - MGP_C57BL6NJ_P0048864 Mtcl1 protein_coding protein_coding MGP_C57BL6NJ_T0048865.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71168421 71218100 - MGP_C57BL6NJ_P0048865 Mtcl1 protein_coding protein_coding MGP_C57BL6NJ_T0048866.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71169111 71278508 - MGP_C57BL6NJ_P0048866 Mtcl1 protein_coding protein_coding MGP_C57BL6NJ_T0048867.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71175361 71177955 - Mtcl1 protein_coding retained_intron MGP_C57BL6NJ_T0048868.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71179375 71210203 - Mtcl1 protein_coding retained_intron MGP_C57BL6NJ_T0048869.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71185601 71194134 - Mtcl1 protein_coding processed_transcript MGP_C57BL6NJ_T0048870.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71185766 71209695 - Mtcl1 protein_coding processed_transcript MGP_C57BL6NJ_T0048871.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71189440 71209309 - Mtcl1 protein_coding retained_intron MGP_C57BL6NJ_T0048872.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71197695 71205909 - Mtcl1 protein_coding processed_transcript MGP_C57BL6NJ_T0048873.1 MGP_C57BL6NJ_G0024392.1 mouse_genomes_project 17 71217944 71287650 - Mtcl1 protein_coding retained_intron MGP_C57BL6NJ_T0046221.1 MGP_C57BL6NJ_G0023664.1 mouse_genomes_project 17 23436848 23445545 - MGP_C57BL6NJ_P0046221 Zfp213 protein_coding protein_coding MGP_C57BL6NJ_T0018051.1 MGP_C57BL6NJ_G0015746.1 mouse_genomes_project 17 52899608 52900911 - Gm20540 processed_transcript processed_transcript MGP_C57BL6NJ_T0101390.1 MGP_C57BL6NJ_G0039436.1 mouse_genomes_project 17 89435773 89435908 + Gm24240 snoRNA snoRNA MGP_C57BL6NJ_T0013530.1 MGP_C57BL6NJ_G0011575.1 mouse_genomes_project 17 10880209 10881233 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048670.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59994826 60002810 - MGP_C57BL6NJ_P0048670 Ubxn6 protein_coding protein_coding MGP_C57BL6NJ_T0048671.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59996031 60002799 - Ubxn6 protein_coding retained_intron MGP_C57BL6NJ_T0048672.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59996031 60000014 - Ubxn6 protein_coding retained_intron MGP_C57BL6NJ_T0048673.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59996317 59997216 - Ubxn6 protein_coding retained_intron MGP_C57BL6NJ_T0048674.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59997419 60000222 - Ubxn6 protein_coding processed_transcript MGP_C57BL6NJ_T0048675.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59997899 60002630 - Ubxn6 protein_coding retained_intron MGP_C57BL6NJ_T0048676.1 MGP_C57BL6NJ_G0024315.1 mouse_genomes_project 17 59998425 60002329 - MGP_C57BL6NJ_P0048676 Ubxn6 protein_coding protein_coding MGP_C57BL6NJ_T0011683.1 MGP_C57BL6NJ_G0009768.1 mouse_genomes_project 17 29695884 29696058 + Gm27599 misc_RNA misc_RNA MGP_C57BL6NJ_T0045889.1 MGP_C57BL6NJ_G0023532.1 mouse_genomes_project 17 4174782 4223270 - MGP_C57BL6NJ_P0045889 Ezr protein_coding protein_coding MGP_C57BL6NJ_T0045890.1 MGP_C57BL6NJ_G0023532.1 mouse_genomes_project 17 4177578 4179563 - Ezr protein_coding processed_transcript MGP_C57BL6NJ_T0045974.1 MGP_C57BL6NJ_G0023560.1 mouse_genomes_project 17 10736594 10827295 - MGP_C57BL6NJ_P0045974 Igf2r protein_coding protein_coding MGP_C57BL6NJ_T0045975.1 MGP_C57BL6NJ_G0023560.1 mouse_genomes_project 17 10752597 10755350 - MGP_C57BL6NJ_P0045975 Igf2r protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045976.1 MGP_C57BL6NJ_G0023560.1 mouse_genomes_project 17 10804936 10807060 - MGP_C57BL6NJ_P0045976 Igf2r protein_coding protein_coding MGP_C57BL6NJ_T0045977.1 MGP_C57BL6NJ_G0023560.1 mouse_genomes_project 17 10804936 10807672 - MGP_C57BL6NJ_P0045977 Igf2r protein_coding protein_coding MGP_C57BL6NJ_T0047131.1 MGP_C57BL6NJ_G0023885.1 mouse_genomes_project 17 31860998 31920457 + MGP_C57BL6NJ_P0047131 Abcg1 protein_coding protein_coding MGP_C57BL6NJ_T0047132.1 MGP_C57BL6NJ_G0023885.1 mouse_genomes_project 17 31861074 31903440 + Abcg1 protein_coding retained_intron MGP_C57BL6NJ_T0048061.1 MGP_C57BL6NJ_G0024091.1 mouse_genomes_project 17 38899039 38902397 - MGP_C57BL6NJ_P0048061 Ppp1r11 protein_coding protein_coding MGP_C57BL6NJ_T0048062.1 MGP_C57BL6NJ_G0024091.1 mouse_genomes_project 17 38899973 38902425 - MGP_C57BL6NJ_P0048062 Ppp1r11 protein_coding protein_coding MGP_C57BL6NJ_T0048063.1 MGP_C57BL6NJ_G0024091.1 mouse_genomes_project 17 38900038 38902022 - MGP_C57BL6NJ_P0048063 Ppp1r11 protein_coding protein_coding MGP_C57BL6NJ_T0102934.1 MGP_C57BL6NJ_G0040728.1 mouse_genomes_project 17 36193811 36233507 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010397.1 MGP_C57BL6NJ_G0008482.1 mouse_genomes_project 17 25361385 25361473 - Mir3547 miRNA miRNA MGP_C57BL6NJ_T0049227.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95299775 95338706 + MGP_C57BL6NJ_P0049227 Ston1 protein_coding protein_coding MGP_C57BL6NJ_T0049228.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95299787 95353606 + Ston1 protein_coding processed_transcript MGP_C57BL6NJ_T0049229.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95329446 95354008 + MGP_C57BL6NJ_P0049229 Ston1 protein_coding protein_coding MGP_C57BL6NJ_T0049230.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95329446 95358176 + MGP_C57BL6NJ_P0049230 Ston1 protein_coding protein_coding MGP_C57BL6NJ_T0049231.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95329500 95372086 + MGP_C57BL6NJ_P0049231 Ston1 protein_coding protein_coding MGP_C57BL6NJ_T0049232.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95329724 95340412 + Ston1 protein_coding retained_intron MGP_C57BL6NJ_T0049233.1 MGP_C57BL6NJ_G0024517.1 mouse_genomes_project 17 95330255 95340511 + Ston1 protein_coding retained_intron MGP_C57BL6NJ_T0048325.1 MGP_C57BL6NJ_G0024208.1 mouse_genomes_project 17 49237237 49243979 - MGP_C57BL6NJ_P0048325 Mad2l1bp protein_coding protein_coding MGP_C57BL6NJ_T0048652.1 MGP_C57BL6NJ_G0024306.1 mouse_genomes_project 17 59849029 59851744 - MGP_C57BL6NJ_P0048652 Zfp119b protein_coding protein_coding MGP_C57BL6NJ_T0046901.1 MGP_C57BL6NJ_G0023835.1 mouse_genomes_project 17 28370505 28378602 - MGP_C57BL6NJ_P0046901 Taf11 protein_coding protein_coding MGP_C57BL6NJ_T0046902.1 MGP_C57BL6NJ_G0023835.1 mouse_genomes_project 17 28370511 28377053 - MGP_C57BL6NJ_P0046902 Taf11 protein_coding protein_coding MGP_C57BL6NJ_T0046903.1 MGP_C57BL6NJ_G0023835.1 mouse_genomes_project 17 28371045 28372655 - Taf11 protein_coding processed_transcript MGP_C57BL6NJ_T0048192.1 MGP_C57BL6NJ_G0024170.1 mouse_genomes_project 17 45029872 45235134 + MGP_C57BL6NJ_P0048192 Ptchd4 protein_coding protein_coding MGP_C57BL6NJ_T0046836.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27307935 27383064 + MGP_C57BL6NJ_P0046836 Ggnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0046837.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27358885 27368894 + Ggnbp1 protein_coding retained_intron MGP_C57BL6NJ_T0046838.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27358896 27383064 + MGP_C57BL6NJ_P0046838 Ggnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0046839.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27358912 27364929 + Ggnbp1 protein_coding processed_transcript MGP_C57BL6NJ_T0046844.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27375172 27383064 + MGP_C57BL6NJ_P0046844 Ggnbp1 protein_coding protein_coding MGP_C57BL6NJ_T0046845.1 MGP_C57BL6NJ_G0023819.1 mouse_genomes_project 17 27376290 27381495 + Ggnbp1 protein_coding retained_intron MGP_C57BL6NJ_T0048809.1 MGP_C57BL6NJ_G0024374.1 mouse_genomes_project 17 67152539 67444181 - MGP_C57BL6NJ_P0048809 Efna5 protein_coding protein_coding MGP_C57BL6NJ_T0048810.1 MGP_C57BL6NJ_G0024374.1 mouse_genomes_project 17 67155760 67444008 - MGP_C57BL6NJ_P0048810 Efna5 protein_coding protein_coding MGP_C57BL6NJ_T0046133.1 MGP_C57BL6NJ_G0023611.1 mouse_genomes_project 17 19405959 19407461 - MGP_C57BL6NJ_P0046133 Fpr-rs6 protein_coding protein_coding MGP_C57BL6NJ_T0045900.1 MGP_C57BL6NJ_G0023538.1 mouse_genomes_project 17 5740551 5819304 - MGP_C57BL6NJ_P0045900 Gm1604b protein_coding protein_coding MGP_C57BL6NJ_T0102918.1 MGP_C57BL6NJ_G0040712.1 mouse_genomes_project 17 23304361 23313033 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048753.1 MGP_C57BL6NJ_G0024345.1 mouse_genomes_project 17 60763962 60819148 - MGP_C57BL6NJ_P0048753 Rfx2 protein_coding protein_coding MGP_C57BL6NJ_T0048754.1 MGP_C57BL6NJ_G0024345.1 mouse_genomes_project 17 60763962 60819148 - MGP_C57BL6NJ_P0048754 Rfx2 protein_coding protein_coding MGP_C57BL6NJ_T0047083.1 MGP_C57BL6NJ_G0023872.1 mouse_genomes_project 17 30208445 30231962 - MGP_C57BL6NJ_P0047083 Tmem217 protein_coding protein_coding MGP_C57BL6NJ_T0047084.1 MGP_C57BL6NJ_G0023872.1 mouse_genomes_project 17 30208445 30231962 - MGP_C57BL6NJ_P0047084 Tmem217 protein_coding protein_coding MGP_C57BL6NJ_T0045885.1 MGP_C57BL6NJ_G0023530.1 mouse_genomes_project 17 3646819 3653580 + MGP_C57BL6NJ_P0045885 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046065.1 MGP_C57BL6NJ_G0023583.1 mouse_genomes_project 17 13931406 13950566 - MGP_C57BL6NJ_P0046065 Psmb1 protein_coding protein_coding MGP_C57BL6NJ_T0046129.1 MGP_C57BL6NJ_G0023607.1 mouse_genomes_project 17 18630889 18659843 + MGP_C57BL6NJ_P0046129 Vmn2r100 protein_coding protein_coding MGP_C57BL6NJ_T0102922.1 MGP_C57BL6NJ_G0040716.1 mouse_genomes_project 17 34426078 34426898 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048004.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37970046 37974695 - MGP_C57BL6NJ_P0048004 H2-T3 protein_coding protein_coding MGP_C57BL6NJ_T0048005.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37970047 37974762 - MGP_C57BL6NJ_P0048005 H2-T3 protein_coding protein_coding MGP_C57BL6NJ_T0048006.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37970151 37974726 - H2-T3 protein_coding retained_intron MGP_C57BL6NJ_T0048007.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37970160 37974609 - MGP_C57BL6NJ_P0048007 H2-T3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048008.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971050 37974597 - H2-T3 protein_coding retained_intron MGP_C57BL6NJ_T0048009.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971050 37974597 - MGP_C57BL6NJ_P0048009 H2-T3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048010.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971050 37974597 - MGP_C57BL6NJ_P0048010 H2-T3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048011.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971053 37974597 - MGP_C57BL6NJ_P0048011 H2-T3 protein_coding protein_coding MGP_C57BL6NJ_T0048012.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971062 37974597 - MGP_C57BL6NJ_P0048012 H2-T3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048013.1 MGP_C57BL6NJ_G0024072.1 mouse_genomes_project 17 37971062 37974597 - MGP_C57BL6NJ_P0048013 H2-T3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047302.1 MGP_C57BL6NJ_G0023935.1 mouse_genomes_project 17 34567773 34569146 + MGP_C57BL6NJ_P0047302 Actl9 protein_coding protein_coding MGP_C57BL6NJ_T0102947.1 MGP_C57BL6NJ_G0040741.1 mouse_genomes_project 17 38011820 38021019 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049007.1 MGP_C57BL6NJ_G0024434.1 mouse_genomes_project 17 79896736 79922580 + MGP_C57BL6NJ_P0049007 Yipf4 protein_coding protein_coding MGP_C57BL6NJ_T0048443.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50576907 50586700 + MGP_C57BL6NJ_P0048443 Mrps10 protein_coding protein_coding MGP_C57BL6NJ_T0048444.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50576912 50583966 + Mrps10 protein_coding retained_intron MGP_C57BL6NJ_T0048445.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50576913 50583087 + MGP_C57BL6NJ_P0048445 Mrps10 protein_coding protein_coding MGP_C57BL6NJ_T0048446.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50576918 50584010 + Mrps10 protein_coding retained_intron MGP_C57BL6NJ_T0048447.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50576927 50586709 + MGP_C57BL6NJ_P0048447 Mrps10 protein_coding protein_coding MGP_C57BL6NJ_T0048448.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50578128 50585820 + Mrps10 protein_coding retained_intron MGP_C57BL6NJ_T0048449.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50579732 50585840 + Mrps10 protein_coding processed_transcript MGP_C57BL6NJ_T0048450.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50580491 50581354 + Mrps10 protein_coding retained_intron MGP_C57BL6NJ_T0048451.1 MGP_C57BL6NJ_G0024246.1 mouse_genomes_project 17 50583491 50589438 + Mrps10 protein_coding retained_intron MGP_C57BL6NJ_T0046515.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25199942 25216274 - Telo2 protein_coding retained_intron MGP_C57BL6NJ_T0046516.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25199942 25216334 - MGP_C57BL6NJ_P0046516 Telo2 protein_coding protein_coding MGP_C57BL6NJ_T0046517.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25199949 25216272 - MGP_C57BL6NJ_P0046517 Telo2 protein_coding protein_coding MGP_C57BL6NJ_T0046518.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25199989 25204016 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046519.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25199997 25207192 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046520.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25200196 25201799 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046521.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25201138 25208517 - Telo2 protein_coding retained_intron MGP_C57BL6NJ_T0046522.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25211200 25215559 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046523.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25211493 25214008 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046524.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25213561 25215679 - Telo2 protein_coding processed_transcript MGP_C57BL6NJ_T0046525.1 MGP_C57BL6NJ_G0023745.1 mouse_genomes_project 17 25214497 25216321 - Telo2 protein_coding retained_intron MGP_C57BL6NJ_T0046815.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231535 27253569 + MGP_C57BL6NJ_P0046815 protein_coding protein_coding MGP_C57BL6NJ_T0046817.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231563 27253569 + MGP_C57BL6NJ_P0046817 protein_coding protein_coding MGP_C57BL6NJ_T0046818.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231565 27251666 + protein_coding retained_intron MGP_C57BL6NJ_T0046819.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231592 27251205 + protein_coding retained_intron MGP_C57BL6NJ_T0046820.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231600 27248073 + protein_coding retained_intron MGP_C57BL6NJ_T0046821.1 MGP_C57BL6NJ_G0023813.1 mouse_genomes_project 17 27231657 27249630 + MGP_C57BL6NJ_P0046821 protein_coding protein_coding MGP_C57BL6NJ_T0046568.1 MGP_C57BL6NJ_G0023757.1 mouse_genomes_project 17 25437028 25442178 + MGP_C57BL6NJ_P0046568 Prss29 protein_coding protein_coding MGP_C57BL6NJ_T0047737.1 MGP_C57BL6NJ_G0024018.1 mouse_genomes_project 17 36548190 36551248 - MGP_C57BL6NJ_P0047737 Ly6g6d protein_coding protein_coding MGP_C57BL6NJ_T0047738.1 MGP_C57BL6NJ_G0024018.1 mouse_genomes_project 17 36548224 36554813 - Ly6g6d protein_coding processed_transcript MGP_C57BL6NJ_T0047739.1 MGP_C57BL6NJ_G0024018.1 mouse_genomes_project 17 36548292 36551212 - Ly6g6d protein_coding retained_intron MGP_C57BL6NJ_T0047740.1 MGP_C57BL6NJ_G0024018.1 mouse_genomes_project 17 36550662 36554813 - Ly6g6d protein_coding retained_intron MGP_C57BL6NJ_T0047741.1 MGP_C57BL6NJ_G0024018.1 mouse_genomes_project 17 36550960 36554804 - Ly6g6d protein_coding processed_transcript MGP_C57BL6NJ_T0045907.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5973049 5997424 + MGP_C57BL6NJ_P0045907 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0045908.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5979490 5997424 + MGP_C57BL6NJ_P0045908 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0045909.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5980771 5997424 + MGP_C57BL6NJ_P0045909 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0045910.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5980771 5997424 + MGP_C57BL6NJ_P0045910 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0045911.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5980771 5997424 + MGP_C57BL6NJ_P0045911 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0045912.1 MGP_C57BL6NJ_G0023542.1 mouse_genomes_project 17 5980771 5997424 + MGP_C57BL6NJ_P0045912 Ccr6 protein_coding protein_coding MGP_C57BL6NJ_T0046150.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20204756 20225350 + MGP_C57BL6NJ_P0046150 Ppp2r1a protein_coding protein_coding MGP_C57BL6NJ_T0046151.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20204932 20218218 + MGP_C57BL6NJ_P0046151 Ppp2r1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046152.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20216010 20218271 + Ppp2r1a protein_coding retained_intron MGP_C57BL6NJ_T0046153.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20216211 20218943 + MGP_C57BL6NJ_P0046153 Ppp2r1a protein_coding protein_coding MGP_C57BL6NJ_T0046154.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20218174 20220032 + Ppp2r1a protein_coding retained_intron MGP_C57BL6NJ_T0046155.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20218422 20221376 + Ppp2r1a protein_coding retained_intron MGP_C57BL6NJ_T0046156.1 MGP_C57BL6NJ_G0023628.1 mouse_genomes_project 17 20219923 20220700 + Ppp2r1a protein_coding retained_intron MGP_C57BL6NJ_T0010412.1 MGP_C57BL6NJ_G0008497.1 mouse_genomes_project 17 29110837 29110898 - Mir6969 miRNA miRNA MGP_C57BL6NJ_T0047810.1 MGP_C57BL6NJ_G0024034.1 mouse_genomes_project 17 36697568 36699701 - MGP_C57BL6NJ_P0047810 Lta protein_coding protein_coding MGP_C57BL6NJ_T0048743.1 MGP_C57BL6NJ_G0024337.1 mouse_genomes_project 17 60575692 60588277 - MGP_C57BL6NJ_P0048743 Lonp1 protein_coding protein_coding MGP_C57BL6NJ_T0047315.1 MGP_C57BL6NJ_G0023937.1 mouse_genomes_project 17 34700318 34761402 + MGP_C57BL6NJ_P0047315 Myo1f protein_coding protein_coding MGP_C57BL6NJ_T0047316.1 MGP_C57BL6NJ_G0023937.1 mouse_genomes_project 17 34700344 34761398 + MGP_C57BL6NJ_P0047316 Myo1f protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047317.1 MGP_C57BL6NJ_G0023937.1 mouse_genomes_project 17 34700364 34726413 + MGP_C57BL6NJ_P0047317 Myo1f protein_coding protein_coding MGP_C57BL6NJ_T0047318.1 MGP_C57BL6NJ_G0023937.1 mouse_genomes_project 17 34730801 34761404 + Myo1f protein_coding retained_intron MGP_C57BL6NJ_T0010420.1 MGP_C57BL6NJ_G0008505.1 mouse_genomes_project 17 36294227 36294294 - Mir6970 miRNA miRNA MGP_C57BL6NJ_T0102932.1 MGP_C57BL6NJ_G0040726.1 mouse_genomes_project 17 36125017 36147630 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048031.1 MGP_C57BL6NJ_G0024079.1 mouse_genomes_project 17 38353048 38356906 - MGP_C57BL6NJ_P0048031 H2-M10.4 protein_coding protein_coding MGP_C57BL6NJ_T0048032.1 MGP_C57BL6NJ_G0024079.1 mouse_genomes_project 17 38354295 38356901 - MGP_C57BL6NJ_P0048032 H2-M10.4 protein_coding protein_coding MGP_C57BL6NJ_T0045852.1 MGP_C57BL6NJ_G0023524.1 mouse_genomes_project 17 2766979 3048722 + MGP_C57BL6NJ_P0045852 Zdhhc14 protein_coding protein_coding MGP_C57BL6NJ_T0046778.1 MGP_C57BL6NJ_G0023805.1 mouse_genomes_project 17 26736331 26739261 - MGP_C57BL6NJ_P0046778 Dusp1 protein_coding protein_coding MGP_C57BL6NJ_T0046779.1 MGP_C57BL6NJ_G0023805.1 mouse_genomes_project 17 26736332 26739216 - Dusp1 protein_coding retained_intron MGP_C57BL6NJ_T0046780.1 MGP_C57BL6NJ_G0023805.1 mouse_genomes_project 17 26737257 26738465 - Dusp1 protein_coding retained_intron MGP_C57BL6NJ_T0007092.1 MGP_C57BL6NJ_G0005839.1 mouse_genomes_project 17 29643629 29644739 + Gm16195 lincRNA lincRNA MGP_C57BL6NJ_T0048137.1 MGP_C57BL6NJ_G0024128.1 mouse_genomes_project 17 39837915 39842098 + MGP_C57BL6NJ_P0048137 Olfr122 protein_coding protein_coding MGP_C57BL6NJ_T0048138.1 MGP_C57BL6NJ_G0024128.1 mouse_genomes_project 17 39840936 39841929 + MGP_C57BL6NJ_P0048138 Olfr122 protein_coding protein_coding MGP_C57BL6NJ_T0047553.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992303 35995374 + MGP_C57BL6NJ_P0047553 Ager protein_coding protein_coding MGP_C57BL6NJ_T0047554.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992303 35995378 + MGP_C57BL6NJ_P0047554 Ager protein_coding protein_coding MGP_C57BL6NJ_T0047555.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992316 35995349 + Ager protein_coding processed_transcript MGP_C57BL6NJ_T0047556.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992316 35995349 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047557.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047558.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047559.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047560.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995338 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047561.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047562.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047563.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995302 + Ager protein_coding retained_intron MGP_C57BL6NJ_T0047564.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995338 + MGP_C57BL6NJ_P0047564 Ager protein_coding protein_coding MGP_C57BL6NJ_T0047565.1 MGP_C57BL6NJ_G0023985.1 mouse_genomes_project 17 35992335 35995338 + MGP_C57BL6NJ_P0047565 Ager protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046290.1 MGP_C57BL6NJ_G0023687.1 mouse_genomes_project 17 23839636 23841335 + MGP_C57BL6NJ_P0046290 protein_coding protein_coding MGP_C57BL6NJ_T0047303.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34668813 34698378 + MGP_C57BL6NJ_P0047303 Adamts10 protein_coding protein_coding MGP_C57BL6NJ_T0047304.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34668813 34698378 + MGP_C57BL6NJ_P0047304 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047305.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34668818 34698377 + MGP_C57BL6NJ_P0047305 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047306.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34668819 34673774 + Adamts10 protein_coding retained_intron MGP_C57BL6NJ_T0047307.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34668835 34698378 + MGP_C57BL6NJ_P0047307 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047308.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34672923 34698058 + MGP_C57BL6NJ_P0047308 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047309.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34672923 34698058 + MGP_C57BL6NJ_P0047309 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047310.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34676241 34698377 + MGP_C57BL6NJ_P0047310 Adamts10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047311.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34676350 34687835 + Adamts10 protein_coding processed_transcript MGP_C57BL6NJ_T0047312.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34681945 34698378 + Adamts10 protein_coding retained_intron MGP_C57BL6NJ_T0047313.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34682328 34698380 + Adamts10 protein_coding retained_intron MGP_C57BL6NJ_T0047314.1 MGP_C57BL6NJ_G0023936.1 mouse_genomes_project 17 34688135 34698392 + Adamts10 protein_coding retained_intron MGP_C57BL6NJ_T0047348.1 MGP_C57BL6NJ_G0023943.1 mouse_genomes_project 17 34953074 34960900 - MGP_C57BL6NJ_P0047348 Angptl4 protein_coding protein_coding MGP_C57BL6NJ_T0047349.1 MGP_C57BL6NJ_G0023943.1 mouse_genomes_project 17 34954232 34960868 - MGP_C57BL6NJ_P0047349 Angptl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047350.1 MGP_C57BL6NJ_G0023943.1 mouse_genomes_project 17 34956295 34957790 - Angptl4 protein_coding retained_intron MGP_C57BL6NJ_T0047351.1 MGP_C57BL6NJ_G0023943.1 mouse_genomes_project 17 34956336 34958468 - Angptl4 protein_coding processed_transcript MGP_C57BL6NJ_T0047638.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36299517 36305496 + MGP_C57BL6NJ_P0047638 Nelfe protein_coding protein_coding MGP_C57BL6NJ_T0047639.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36299524 36305381 + MGP_C57BL6NJ_P0047639 Nelfe protein_coding protein_coding MGP_C57BL6NJ_T0047640.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36299534 36303216 + MGP_C57BL6NJ_P0047640 Nelfe protein_coding protein_coding MGP_C57BL6NJ_T0047641.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36299534 36305499 + MGP_C57BL6NJ_P0047641 Nelfe protein_coding protein_coding MGP_C57BL6NJ_T0047642.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36301734 36302996 + Nelfe protein_coding retained_intron MGP_C57BL6NJ_T0047643.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36303062 36303653 + Nelfe protein_coding retained_intron MGP_C57BL6NJ_T0047644.1 MGP_C57BL6NJ_G0023999.1 mouse_genomes_project 17 36303382 36303881 + Nelfe protein_coding retained_intron MGP_C57BL6NJ_T0047531.1 MGP_C57BL6NJ_G0023980.1 mouse_genomes_project 17 35787108 35794004 - MGP_C57BL6NJ_P0047531 Btnl4 protein_coding protein_coding MGP_C57BL6NJ_T0049186.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93785790 93893531 + MGP_C57BL6NJ_P0049186 Ttc7 protein_coding protein_coding MGP_C57BL6NJ_T0049187.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93785797 93795834 + Ttc7 protein_coding processed_transcript MGP_C57BL6NJ_T0049188.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93785809 93882437 + MGP_C57BL6NJ_P0049188 Ttc7 protein_coding protein_coding MGP_C57BL6NJ_T0049189.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93785855 93872454 + MGP_C57BL6NJ_P0049189 Ttc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049190.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93795715 93891848 + MGP_C57BL6NJ_P0049190 Ttc7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049191.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93813423 93833922 + Ttc7 protein_coding processed_transcript MGP_C57BL6NJ_T0049192.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93827093 93839162 + Ttc7 protein_coding retained_intron MGP_C57BL6NJ_T0049193.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93834058 93844812 + Ttc7 protein_coding processed_transcript MGP_C57BL6NJ_T0049194.1 MGP_C57BL6NJ_G0024506.1 mouse_genomes_project 17 93890614 93893531 + Ttc7 protein_coding processed_transcript MGP_C57BL6NJ_T0007127.1 MGP_C57BL6NJ_G0005868.1 mouse_genomes_project 17 52568370 52569636 - 1700008K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007128.1 MGP_C57BL6NJ_G0005868.1 mouse_genomes_project 17 52568370 52569623 - 1700008K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007129.1 MGP_C57BL6NJ_G0005868.1 mouse_genomes_project 17 52568372 52569601 - 1700008K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007130.1 MGP_C57BL6NJ_G0005868.1 mouse_genomes_project 17 52568372 52569544 - 1700008K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007131.1 MGP_C57BL6NJ_G0005868.1 mouse_genomes_project 17 52568480 52569643 - 1700008K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0048780.1 MGP_C57BL6NJ_G0024358.1 mouse_genomes_project 17 61098723 61111289 - MGP_C57BL6NJ_P0048780 Dennd1c protein_coding protein_coding MGP_C57BL6NJ_T0049265.1 MGP_C57BL6NJ_G0024522.1 mouse_genomes_project 17 97946629 97947528 + MGP_C57BL6NJ_P0049265 Gm10308 protein_coding protein_coding MGP_C57BL6NJ_T0046740.1 MGP_C57BL6NJ_G0023799.1 mouse_genomes_project 17 26406818 26409907 - MGP_C57BL6NJ_P0046740 Pdia2 protein_coding protein_coding MGP_C57BL6NJ_T0046741.1 MGP_C57BL6NJ_G0023799.1 mouse_genomes_project 17 26406825 26407736 - MGP_C57BL6NJ_P0046741 Pdia2 protein_coding protein_coding MGP_C57BL6NJ_T0046742.1 MGP_C57BL6NJ_G0023799.1 mouse_genomes_project 17 26406844 26409882 - MGP_C57BL6NJ_P0046742 Pdia2 protein_coding protein_coding MGP_C57BL6NJ_T0046744.1 MGP_C57BL6NJ_G0023799.1 mouse_genomes_project 17 26408313 26409828 - MGP_C57BL6NJ_P0046744 Pdia2 protein_coding protein_coding MGP_C57BL6NJ_T0047221.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33285978 33315158 - MGP_C57BL6NJ_P0047221 Wiz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047222.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33285979 33315448 - MGP_C57BL6NJ_P0047222 Wiz protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047223.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33285980 33315399 - MGP_C57BL6NJ_P0047223 Wiz protein_coding protein_coding MGP_C57BL6NJ_T0047224.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33285984 33314331 - MGP_C57BL6NJ_P0047224 Wiz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047225.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33286572 33294887 - MGP_C57BL6NJ_P0047225 Wiz protein_coding protein_coding MGP_C57BL6NJ_T0047226.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33286947 33314273 - MGP_C57BL6NJ_P0047226 Wiz protein_coding protein_coding MGP_C57BL6NJ_T0047227.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33293598 33296387 - Wiz protein_coding processed_transcript MGP_C57BL6NJ_T0047228.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33293737 33301376 - Wiz protein_coding retained_intron MGP_C57BL6NJ_T0047229.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33293832 33315100 - MGP_C57BL6NJ_P0047229 Wiz protein_coding protein_coding MGP_C57BL6NJ_T0047230.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33298954 33315240 - Wiz protein_coding retained_intron MGP_C57BL6NJ_T0047231.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33299994 33315464 - MGP_C57BL6NJ_P0047231 Wiz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047232.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33301228 33315269 - MGP_C57BL6NJ_P0047232 Wiz protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047233.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33302878 33314331 - Wiz protein_coding retained_intron MGP_C57BL6NJ_T0047234.1 MGP_C57BL6NJ_G0023908.1 mouse_genomes_project 17 33314086 33315630 - MGP_C57BL6NJ_P0047234 Wiz protein_coding protein_coding MGP_C57BL6NJ_T0007093.1 MGP_C57BL6NJ_G0005840.1 mouse_genomes_project 17 29693617 29717427 - Trp53cor1 lincRNA lincRNA MGP_C57BL6NJ_T0046049.1 MGP_C57BL6NJ_G0023578.1 mouse_genomes_project 17 13375310 13390601 - MGP_C57BL6NJ_P0046049 protein_coding protein_coding MGP_C57BL6NJ_T0046050.1 MGP_C57BL6NJ_G0023578.1 mouse_genomes_project 17 13375314 13422016 - MGP_C57BL6NJ_P0046050 protein_coding protein_coding MGP_C57BL6NJ_T0102901.1 MGP_C57BL6NJ_G0040695.1 mouse_genomes_project 17 18889194 18890100 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007120.1 MGP_C57BL6NJ_G0005862.1 mouse_genomes_project 17 42270857 42272029 + lincRNA lincRNA MGP_C57BL6NJ_T0007121.1 MGP_C57BL6NJ_G0005863.1 mouse_genomes_project 17 48441609 48450672 + B230354K17Rik lincRNA lincRNA MGP_C57BL6NJ_T0047804.1 MGP_C57BL6NJ_G0024031.1 mouse_genomes_project 17 36677689 36681601 - MGP_C57BL6NJ_P0047804 Lst1 protein_coding protein_coding MGP_C57BL6NJ_T0047711.1 MGP_C57BL6NJ_G0024012.1 mouse_genomes_project 17 36501307 36502858 - Sapcd1 protein_coding retained_intron MGP_C57BL6NJ_T0047712.1 MGP_C57BL6NJ_G0024012.1 mouse_genomes_project 17 36501307 36503113 - MGP_C57BL6NJ_P0047712 Sapcd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047713.1 MGP_C57BL6NJ_G0024012.1 mouse_genomes_project 17 36501325 36503215 - MGP_C57BL6NJ_P0047713 Sapcd1 protein_coding protein_coding MGP_C57BL6NJ_T0047714.1 MGP_C57BL6NJ_G0024012.1 mouse_genomes_project 17 36501613 36503215 - MGP_C57BL6NJ_P0047714 Sapcd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046267.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23699950 23717900 + MGP_C57BL6NJ_P0046267 Srrm2 protein_coding protein_coding MGP_C57BL6NJ_T0046268.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23712571 23735388 + MGP_C57BL6NJ_P0046268 Srrm2 protein_coding protein_coding MGP_C57BL6NJ_T0046269.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23712605 23735393 + MGP_C57BL6NJ_P0046269 Srrm2 protein_coding protein_coding MGP_C57BL6NJ_T0046270.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23717299 23719425 + MGP_C57BL6NJ_P0046270 Srrm2 protein_coding protein_coding MGP_C57BL6NJ_T0046271.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23717479 23718090 + Srrm2 protein_coding retained_intron MGP_C57BL6NJ_T0046272.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23721104 23722033 + MGP_C57BL6NJ_P0046272 Srrm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046273.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23721332 23725925 + Srrm2 protein_coding retained_intron MGP_C57BL6NJ_T0046274.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23728740 23731961 + Srrm2 protein_coding processed_transcript MGP_C57BL6NJ_T0046275.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23730819 23732093 + MGP_C57BL6NJ_P0046275 Srrm2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046276.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23732957 23733760 + Srrm2 protein_coding retained_intron MGP_C57BL6NJ_T0046277.1 MGP_C57BL6NJ_G0023680.1 mouse_genomes_project 17 23733063 23733658 + MGP_C57BL6NJ_P0046277 Srrm2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046122.1 MGP_C57BL6NJ_G0023600.1 mouse_genomes_project 17 16921021 16983760 + MGP_C57BL6NJ_P0046122 protein_coding protein_coding MGP_C57BL6NJ_T0013607.1 MGP_C57BL6NJ_G0011652.1 mouse_genomes_project 17 72761561 72762499 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007101.1 MGP_C57BL6NJ_G0005845.1 mouse_genomes_project 17 33211159 33227942 + Gm26549 lincRNA lincRNA MGP_C57BL6NJ_T0048437.1 MGP_C57BL6NJ_G0024243.1 mouse_genomes_project 17 50072563 50086954 + MGP_C57BL6NJ_P0048437 Prph2 protein_coding protein_coding MGP_C57BL6NJ_T0048438.1 MGP_C57BL6NJ_G0024243.1 mouse_genomes_project 17 50072582 50082368 + Prph2 protein_coding retained_intron MGP_C57BL6NJ_T0003910.1 MGP_C57BL6NJ_G0003508.1 mouse_genomes_project 17 37528630 37534583 - Ppp1r18os antisense antisense MGP_C57BL6NJ_T0048694.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60255403 60282819 + MGP_C57BL6NJ_P0048694 protein_coding protein_coding MGP_C57BL6NJ_T0048695.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60255482 60282819 + MGP_C57BL6NJ_P0048695 protein_coding protein_coding MGP_C57BL6NJ_T0048696.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60256395 60282819 + MGP_C57BL6NJ_P0048696 protein_coding protein_coding MGP_C57BL6NJ_T0048697.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60256430 60282819 + MGP_C57BL6NJ_P0048697 protein_coding protein_coding MGP_C57BL6NJ_T0048698.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60256489 60262802 + MGP_C57BL6NJ_P0048698 protein_coding protein_coding MGP_C57BL6NJ_T0048699.1 MGP_C57BL6NJ_G0024329.1 mouse_genomes_project 17 60264745 60265259 + protein_coding retained_intron MGP_C57BL6NJ_T0102953.1 MGP_C57BL6NJ_G0040747.1 mouse_genomes_project 17 38400376 38402149 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045840.1 MGP_C57BL6NJ_G0023519.1 mouse_genomes_project 17 656095 656755 + MGP_C57BL6NJ_P0045840 Cldn20 protein_coding protein_coding MGP_C57BL6NJ_T0001121.1 MGP_C57BL6NJ_G0001027.1 mouse_genomes_project 17 55376062 55378054 - TEC TEC MGP_C57BL6NJ_T0048879.1 MGP_C57BL6NJ_G0024394.1 mouse_genomes_project 17 71403265 71442663 - MGP_C57BL6NJ_P0048879 Themis3 protein_coding protein_coding MGP_C57BL6NJ_T0013524.1 MGP_C57BL6NJ_G0011569.1 mouse_genomes_project 17 6540565 6541121 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101377.1 MGP_C57BL6NJ_G0039423.1 mouse_genomes_project 17 38790930 38791057 - Gm25973 snoRNA snoRNA MGP_C57BL6NJ_T0048454.1 MGP_C57BL6NJ_G0024248.1 mouse_genomes_project 17 50602500 50608512 - MGP_C57BL6NJ_P0048454 Guca1a protein_coding protein_coding MGP_C57BL6NJ_T0048974.1 MGP_C57BL6NJ_G0024416.1 mouse_genomes_project 17 76790170 76832653 + MGP_C57BL6NJ_P0048974 Wdr43 protein_coding protein_coding MGP_C57BL6NJ_T0046715.1 MGP_C57BL6NJ_G0023791.1 mouse_genomes_project 17 26121282 26133922 + MGP_C57BL6NJ_P0046715 D630044L22Rik protein_coding protein_coding MGP_C57BL6NJ_T0045839.1 MGP_C57BL6NJ_G0023518.1 mouse_genomes_project 17 641841 681151 - MGP_C57BL6NJ_P0045839 Tfb1m protein_coding protein_coding MGP_C57BL6NJ_T0046184.1 MGP_C57BL6NJ_G0023646.1 mouse_genomes_project 17 21445664 21484814 - MGP_C57BL6NJ_P0046184 Zfp942 protein_coding protein_coding MGP_C57BL6NJ_T0046185.1 MGP_C57BL6NJ_G0023646.1 mouse_genomes_project 17 21446890 21451727 - MGP_C57BL6NJ_P0046185 Zfp942 protein_coding protein_coding MGP_C57BL6NJ_T0046186.1 MGP_C57BL6NJ_G0023646.1 mouse_genomes_project 17 21460140 21484827 - Zfp942 protein_coding retained_intron MGP_C57BL6NJ_T0046466.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24976795 24983365 - MGP_C57BL6NJ_P0046466 Eme2 protein_coding protein_coding MGP_C57BL6NJ_T0046467.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24980461 24983397 - MGP_C57BL6NJ_P0046467 Eme2 protein_coding protein_coding MGP_C57BL6NJ_T0046469.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24980464 24983369 - MGP_C57BL6NJ_P0046469 Eme2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046470.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24980789 24983388 - Eme2 protein_coding retained_intron MGP_C57BL6NJ_T0046471.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24981090 24982495 - Eme2 protein_coding retained_intron MGP_C57BL6NJ_T0046472.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24981449 24983365 - Eme2 protein_coding retained_intron MGP_C57BL6NJ_T0046473.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24981672 24983372 - Eme2 protein_coding retained_intron MGP_C57BL6NJ_T0046474.1 MGP_C57BL6NJ_G0023737.1 mouse_genomes_project 17 24982057 24983335 - Eme2 protein_coding retained_intron MGP_C57BL6NJ_T0046449.1 MGP_C57BL6NJ_G0023732.1 mouse_genomes_project 17 24936214 24937621 - MGP_C57BL6NJ_P0046449 Fahd1 protein_coding protein_coding MGP_C57BL6NJ_T0003911.1 MGP_C57BL6NJ_G0003509.1 mouse_genomes_project 17 37575636 37590939 + Gm16279 antisense antisense MGP_C57BL6NJ_T0010424.1 MGP_C57BL6NJ_G0008509.1 mouse_genomes_project 17 36750942 36751003 + Mir6975 miRNA miRNA MGP_C57BL6NJ_T0048247.1 MGP_C57BL6NJ_G0024191.1 mouse_genomes_project 17 48395993 48441465 - MGP_C57BL6NJ_P0048247 Cdc5l protein_coding protein_coding MGP_C57BL6NJ_T0048791.1 MGP_C57BL6NJ_G0024366.1 mouse_genomes_project 17 61314899 61330919 + MGP_C57BL6NJ_P0048791 Trip10 protein_coding protein_coding MGP_C57BL6NJ_T0047449.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35302729 35309311 + MGP_C57BL6NJ_P0047449 Rxrb protein_coding protein_coding MGP_C57BL6NJ_T0047450.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35303100 35308618 + MGP_C57BL6NJ_P0047450 Rxrb protein_coding protein_coding MGP_C57BL6NJ_T0047451.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35303113 35305120 + MGP_C57BL6NJ_P0047451 Rxrb protein_coding protein_coding MGP_C57BL6NJ_T0047452.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35303292 35308733 + MGP_C57BL6NJ_P0047452 Rxrb protein_coding protein_coding MGP_C57BL6NJ_T0047453.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35303318 35309311 + MGP_C57BL6NJ_P0047453 Rxrb protein_coding protein_coding MGP_C57BL6NJ_T0047454.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35304469 35306928 + Rxrb protein_coding retained_intron MGP_C57BL6NJ_T0047455.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35304825 35307291 + Rxrb protein_coding retained_intron MGP_C57BL6NJ_T0047456.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35307240 35308192 + Rxrb protein_coding retained_intron MGP_C57BL6NJ_T0047457.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35307284 35308225 + Rxrb protein_coding retained_intron MGP_C57BL6NJ_T0047458.1 MGP_C57BL6NJ_G0023961.1 mouse_genomes_project 17 35307380 35308452 + Rxrb protein_coding retained_intron MGP_C57BL6NJ_T0102960.1 MGP_C57BL6NJ_G0040754.1 mouse_genomes_project 17 38601593 38602717 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102965.1 MGP_C57BL6NJ_G0040759.1 mouse_genomes_project 17 38921168 38923370 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102951.1 MGP_C57BL6NJ_G0040745.1 mouse_genomes_project 17 38289615 38291726 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047505.1 MGP_C57BL6NJ_G0023971.1 mouse_genomes_project 17 35509278 35512426 - MGP_C57BL6NJ_P0047505 Gm15821 protein_coding protein_coding MGP_C57BL6NJ_T0013624.1 MGP_C57BL6NJ_G0011669.1 mouse_genomes_project 17 97390694 97391029 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047732.1 MGP_C57BL6NJ_G0024016.1 mouse_genomes_project 17 36539452 36542944 - MGP_C57BL6NJ_P0047732 G6b protein_coding protein_coding MGP_C57BL6NJ_T0047733.1 MGP_C57BL6NJ_G0024016.1 mouse_genomes_project 17 36541091 36542930 - MGP_C57BL6NJ_P0047733 G6b protein_coding protein_coding MGP_C57BL6NJ_T0048251.1 MGP_C57BL6NJ_G0024195.1 mouse_genomes_project 17 48570951 48578602 - MGP_C57BL6NJ_P0048251 Tmem151b protein_coding protein_coding MGP_C57BL6NJ_T0048679.1 MGP_C57BL6NJ_G0024318.1 mouse_genomes_project 17 60041996 60047992 - MGP_C57BL6NJ_P0048679 Plin5 protein_coding protein_coding MGP_C57BL6NJ_T0048680.1 MGP_C57BL6NJ_G0024318.1 mouse_genomes_project 17 60042002 60047694 - MGP_C57BL6NJ_P0048680 Plin5 protein_coding protein_coding MGP_C57BL6NJ_T0007089.1 MGP_C57BL6NJ_G0005837.1 mouse_genomes_project 17 29066478 29068569 + E230001N04Rik lincRNA lincRNA MGP_C57BL6NJ_T0007090.1 MGP_C57BL6NJ_G0005837.1 mouse_genomes_project 17 29066514 29068569 + E230001N04Rik lincRNA lincRNA MGP_C57BL6NJ_T0048053.1 MGP_C57BL6NJ_G0024088.1 mouse_genomes_project 17 38830352 38838859 - MGP_C57BL6NJ_P0048053 Trim40 protein_coding protein_coding MGP_C57BL6NJ_T0048054.1 MGP_C57BL6NJ_G0024088.1 mouse_genomes_project 17 38830599 38838288 - MGP_C57BL6NJ_P0048054 Trim40 protein_coding protein_coding MGP_C57BL6NJ_T0048055.1 MGP_C57BL6NJ_G0024088.1 mouse_genomes_project 17 38831700 38838937 - Trim40 protein_coding retained_intron MGP_C57BL6NJ_T0048056.1 MGP_C57BL6NJ_G0024088.1 mouse_genomes_project 17 38838019 38838926 - Trim40 protein_coding processed_transcript MGP_C57BL6NJ_T0007061.1 MGP_C57BL6NJ_G0005813.1 mouse_genomes_project 17 6960302 6984317 - 6530411M01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007055.1 MGP_C57BL6NJ_G0005810.1 mouse_genomes_project 17 3098604 3102872 + 3300005D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007056.1 MGP_C57BL6NJ_G0005810.1 mouse_genomes_project 17 3098646 3103027 + 3300005D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007057.1 MGP_C57BL6NJ_G0005810.1 mouse_genomes_project 17 3099438 3103219 + 3300005D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007058.1 MGP_C57BL6NJ_G0005810.1 mouse_genomes_project 17 3099599 3102873 + 3300005D01Rik lincRNA lincRNA MGP_C57BL6NJ_T0001123.1 MGP_C57BL6NJ_G0001029.1 mouse_genomes_project 17 55419356 55421261 + TEC TEC MGP_C57BL6NJ_T0046714.1 MGP_C57BL6NJ_G0023790.1 mouse_genomes_project 17 26113156 26122376 - MGP_C57BL6NJ_P0046714 A930017K11Rik protein_coding protein_coding MGP_C57BL6NJ_T0046143.1 MGP_C57BL6NJ_G0023621.1 mouse_genomes_project 17 19876019 19877051 - MGP_C57BL6NJ_P0046143 Fpr-rs3 protein_coding protein_coding MGP_C57BL6NJ_T0013580.1 MGP_C57BL6NJ_G0011625.1 mouse_genomes_project 17 40034324 40034818 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003919.1 MGP_C57BL6NJ_G0003514.1 mouse_genomes_project 17 47527160 47528343 + Runx2os3 antisense antisense MGP_C57BL6NJ_T0048489.1 MGP_C57BL6NJ_G0024258.1 mouse_genomes_project 17 50940490 50942028 - MGP_C57BL6NJ_P0048489 Tomm6 protein_coding protein_coding MGP_C57BL6NJ_T0048491.1 MGP_C57BL6NJ_G0024258.1 mouse_genomes_project 17 50940584 50942231 - Tomm6 protein_coding retained_intron MGP_C57BL6NJ_T0048492.1 MGP_C57BL6NJ_G0024258.1 mouse_genomes_project 17 50940584 50941913 - MGP_C57BL6NJ_P0048492 Tomm6 protein_coding protein_coding MGP_C57BL6NJ_T0047401.1 MGP_C57BL6NJ_G0023952.1 mouse_genomes_project 17 35143129 35152185 + MGP_C57BL6NJ_P0047401 Wdr46 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047402.1 MGP_C57BL6NJ_G0023952.1 mouse_genomes_project 17 35143140 35152176 + MGP_C57BL6NJ_P0047402 Wdr46 protein_coding protein_coding MGP_C57BL6NJ_T0047403.1 MGP_C57BL6NJ_G0023952.1 mouse_genomes_project 17 35143197 35143941 + Wdr46 protein_coding retained_intron MGP_C57BL6NJ_T0047404.1 MGP_C57BL6NJ_G0023952.1 mouse_genomes_project 17 35143885 35146159 + Wdr46 protein_coding retained_intron MGP_C57BL6NJ_T0045988.1 MGP_C57BL6NJ_G0023563.1 mouse_genomes_project 17 10956584 10981677 - MGP_C57BL6NJ_P0045988 Pnldc1 protein_coding protein_coding MGP_C57BL6NJ_T0100081.1 MGP_C57BL6NJ_G0038127.1 mouse_genomes_project 17 39283621 39283784 - Gm25104 snRNA snRNA MGP_C57BL6NJ_T0048242.1 MGP_C57BL6NJ_G0024190.1 mouse_genomes_project 17 47755817 48107324 + MGP_C57BL6NJ_P0048242 Supt3 protein_coding protein_coding MGP_C57BL6NJ_T0048243.1 MGP_C57BL6NJ_G0024190.1 mouse_genomes_project 17 47755990 47910116 + Supt3 protein_coding processed_transcript MGP_C57BL6NJ_T0048244.1 MGP_C57BL6NJ_G0024190.1 mouse_genomes_project 17 47756061 48107320 + MGP_C57BL6NJ_P0048244 Supt3 protein_coding protein_coding MGP_C57BL6NJ_T0048245.1 MGP_C57BL6NJ_G0024190.1 mouse_genomes_project 17 47766596 48107313 + MGP_C57BL6NJ_P0048245 Supt3 protein_coding protein_coding MGP_C57BL6NJ_T0100097.1 MGP_C57BL6NJ_G0038143.1 mouse_genomes_project 17 81611149 81611255 + Gm24126 snRNA snRNA MGP_C57BL6NJ_T0003890.1 MGP_C57BL6NJ_G0003493.1 mouse_genomes_project 17 29534604 29548269 + Gm16191 antisense antisense MGP_C57BL6NJ_T0003891.1 MGP_C57BL6NJ_G0003493.1 mouse_genomes_project 17 29543562 29544220 + Gm16191 antisense antisense MGP_C57BL6NJ_T0048799.1 MGP_C57BL6NJ_G0024369.1 mouse_genomes_project 17 61589123 61624309 - MGP_C57BL6NJ_P0048799 Vmn2r120 protein_coding protein_coding MGP_C57BL6NJ_T0101381.1 MGP_C57BL6NJ_G0039427.1 mouse_genomes_project 17 66988018 66988152 - Gm25800 snoRNA snoRNA MGP_C57BL6NJ_T0047123.1 MGP_C57BL6NJ_G0023881.1 mouse_genomes_project 17 31342802 31364194 - MGP_C57BL6NJ_P0047123 Glo1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047124.1 MGP_C57BL6NJ_G0023881.1 mouse_genomes_project 17 31344426 31364302 - MGP_C57BL6NJ_P0047124 Glo1 protein_coding protein_coding MGP_C57BL6NJ_T0047125.1 MGP_C57BL6NJ_G0023881.1 mouse_genomes_project 17 31344426 31364302 - MGP_C57BL6NJ_P0047125 Glo1 protein_coding protein_coding MGP_C57BL6NJ_T0045899.1 MGP_C57BL6NJ_G0023537.1 mouse_genomes_project 17 5453256 5456068 + MGP_C57BL6NJ_P0045899 Tagap1 protein_coding protein_coding MGP_C57BL6NJ_T0048415.1 MGP_C57BL6NJ_G0024230.1 mouse_genomes_project 17 49796973 49803735 - MGP_C57BL6NJ_P0048415 Rrp36 protein_coding protein_coding MGP_C57BL6NJ_T0102973.1 MGP_C57BL6NJ_G0040767.1 mouse_genomes_project 17 39410013 39410852 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101364.1 MGP_C57BL6NJ_G0039410.1 mouse_genomes_project 17 10991634 10991772 + Gm26130 snoRNA snoRNA MGP_C57BL6NJ_T0013619.1 MGP_C57BL6NJ_G0011664.1 mouse_genomes_project 17 84667876 84669041 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047709.1 MGP_C57BL6NJ_G0024011.1 mouse_genomes_project 17 36490324 36502090 + MGP_C57BL6NJ_P0047709 Vwa7 protein_coding protein_coding MGP_C57BL6NJ_T0047710.1 MGP_C57BL6NJ_G0024011.1 mouse_genomes_project 17 36490383 36501869 + MGP_C57BL6NJ_P0047710 Vwa7 protein_coding protein_coding MGP_C57BL6NJ_T0046401.1 MGP_C57BL6NJ_G0023715.1 mouse_genomes_project 17 24569835 24576321 - MGP_C57BL6NJ_P0046401 Rab26 protein_coding protein_coding MGP_C57BL6NJ_T0046402.1 MGP_C57BL6NJ_G0023715.1 mouse_genomes_project 17 24571648 24576483 - MGP_C57BL6NJ_P0046402 Rab26 protein_coding protein_coding MGP_C57BL6NJ_T0046403.1 MGP_C57BL6NJ_G0023715.1 mouse_genomes_project 17 24571659 24576307 - Rab26 protein_coding retained_intron MGP_C57BL6NJ_T0046404.1 MGP_C57BL6NJ_G0023715.1 mouse_genomes_project 17 24571915 24572541 - Rab26 protein_coding retained_intron MGP_C57BL6NJ_T0046405.1 MGP_C57BL6NJ_G0023715.1 mouse_genomes_project 17 24572135 24576805 - MGP_C57BL6NJ_P0046405 Rab26 protein_coding protein_coding MGP_C57BL6NJ_T0100090.1 MGP_C57BL6NJ_G0038136.1 mouse_genomes_project 17 59548732 59548837 + Gm22654 snRNA snRNA MGP_C57BL6NJ_T0048402.1 MGP_C57BL6NJ_G0024226.1 mouse_genomes_project 17 49686001 49756898 - MGP_C57BL6NJ_P0048402 Ptk7 protein_coding protein_coding MGP_C57BL6NJ_T0012076.1 MGP_C57BL6NJ_G0010153.1 mouse_genomes_project 17 23429501 23433646 - MGP_C57BL6NJ_P0012076 Casp16-ps polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012077.1 MGP_C57BL6NJ_G0010153.1 mouse_genomes_project 17 23429609 23433568 - MGP_C57BL6NJ_P0012077 Casp16-ps polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0046253.1 MGP_C57BL6NJ_G0023674.1 mouse_genomes_project 17 23601718 23626608 - 1520401A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0046254.1 MGP_C57BL6NJ_G0023674.1 mouse_genomes_project 17 23601718 23626608 - MGP_C57BL6NJ_P0046254 1520401A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0046255.1 MGP_C57BL6NJ_G0023674.1 mouse_genomes_project 17 23601718 23624551 - MGP_C57BL6NJ_P0046255 1520401A03Rik protein_coding protein_coding MGP_C57BL6NJ_T0046256.1 MGP_C57BL6NJ_G0023674.1 mouse_genomes_project 17 23602106 23625765 - 1520401A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0046257.1 MGP_C57BL6NJ_G0023674.1 mouse_genomes_project 17 23602106 23603388 - 1520401A03Rik protein_coding retained_intron MGP_C57BL6NJ_T0047326.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34795555 34844805 - MGP_C57BL6NJ_P0047326 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047327.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34795557 34843337 - MGP_C57BL6NJ_P0047327 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047328.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34795558 34843333 - MGP_C57BL6NJ_P0047328 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047329.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34795561 34818195 - MGP_C57BL6NJ_P0047329 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047330.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34795561 34843333 - MGP_C57BL6NJ_P0047330 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047331.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34806351 34824515 - MGP_C57BL6NJ_P0047331 Hnrnpm protein_coding protein_coding MGP_C57BL6NJ_T0047332.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34826582 34843330 - Hnrnpm protein_coding retained_intron MGP_C57BL6NJ_T0047333.1 MGP_C57BL6NJ_G0023940.1 mouse_genomes_project 17 34834884 34843346 - Hnrnpm protein_coding retained_intron MGP_C57BL6NJ_T0048154.1 MGP_C57BL6NJ_G0024141.1 mouse_genomes_project 17 40308011 40309090 + MGP_C57BL6NJ_P0048154 Olfr135 protein_coding protein_coding MGP_C57BL6NJ_T0046981.1 MGP_C57BL6NJ_G0023849.1 mouse_genomes_project 17 29110606 29115062 - MGP_C57BL6NJ_P0046981 Clps protein_coding protein_coding MGP_C57BL6NJ_T0046982.1 MGP_C57BL6NJ_G0023849.1 mouse_genomes_project 17 29110609 29115007 - MGP_C57BL6NJ_P0046982 Clps protein_coding protein_coding MGP_C57BL6NJ_T0046760.1 MGP_C57BL6NJ_G0023802.1 mouse_genomes_project 17 26422793 26455781 - MGP_C57BL6NJ_P0046760 Fam234a protein_coding protein_coding MGP_C57BL6NJ_T0046761.1 MGP_C57BL6NJ_G0023802.1 mouse_genomes_project 17 26423684 26455699 - MGP_C57BL6NJ_P0046761 Fam234a protein_coding protein_coding MGP_C57BL6NJ_T0046762.1 MGP_C57BL6NJ_G0023802.1 mouse_genomes_project 17 26424515 26427206 - MGP_C57BL6NJ_P0046762 Fam234a protein_coding protein_coding MGP_C57BL6NJ_T0046763.1 MGP_C57BL6NJ_G0023802.1 mouse_genomes_project 17 26426178 26427930 - Fam234a protein_coding retained_intron MGP_C57BL6NJ_T0046764.1 MGP_C57BL6NJ_G0023802.1 mouse_genomes_project 17 26429250 26431661 - MGP_C57BL6NJ_P0046764 Fam234a protein_coding protein_coding MGP_C57BL6NJ_T0046735.1 MGP_C57BL6NJ_G0023798.1 mouse_genomes_project 17 26344721 26406631 + MGP_C57BL6NJ_P0046735 Axin1 protein_coding protein_coding MGP_C57BL6NJ_T0046736.1 MGP_C57BL6NJ_G0023798.1 mouse_genomes_project 17 26344861 26406061 + MGP_C57BL6NJ_P0046736 Axin1 protein_coding protein_coding MGP_C57BL6NJ_T0046737.1 MGP_C57BL6NJ_G0023798.1 mouse_genomes_project 17 26345070 26406114 + MGP_C57BL6NJ_P0046737 Axin1 protein_coding protein_coding MGP_C57BL6NJ_T0046738.1 MGP_C57BL6NJ_G0023798.1 mouse_genomes_project 17 26349467 26395000 + MGP_C57BL6NJ_P0046738 Axin1 protein_coding protein_coding MGP_C57BL6NJ_T0046739.1 MGP_C57BL6NJ_G0023798.1 mouse_genomes_project 17 26398951 26399594 + Axin1 protein_coding retained_intron MGP_C57BL6NJ_T0003897.1 MGP_C57BL6NJ_G0003496.1 mouse_genomes_project 17 33773251 33774451 + Gm17115 antisense antisense MGP_C57BL6NJ_T0048132.1 MGP_C57BL6NJ_G0024123.1 mouse_genomes_project 17 39719428 39725245 - MGP_C57BL6NJ_P0048132 protein_coding protein_coding MGP_C57BL6NJ_T0013537.1 MGP_C57BL6NJ_G0011582.1 mouse_genomes_project 17 14040963 14042313 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007097.1 MGP_C57BL6NJ_G0005842.1 mouse_genomes_project 17 30139592 30169880 - Gm26885 lincRNA lincRNA MGP_C57BL6NJ_T0101389.1 MGP_C57BL6NJ_G0039435.1 mouse_genomes_project 17 88299398 88299527 - Gm22386 snoRNA snoRNA MGP_C57BL6NJ_T0049167.1 MGP_C57BL6NJ_G0024497.1 mouse_genomes_project 17 92941328 92950269 - MGP_C57BL6NJ_P0049167 Gm10309 protein_coding protein_coding MGP_C57BL6NJ_T0046218.1 MGP_C57BL6NJ_G0023661.1 mouse_genomes_project 17 23172984 23213968 + MGP_C57BL6NJ_P0046218 Vmn2r115 protein_coding protein_coding MGP_C57BL6NJ_T0102968.1 MGP_C57BL6NJ_G0040762.1 mouse_genomes_project 17 39293172 39294630 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048755.1 MGP_C57BL6NJ_G0024346.1 mouse_genomes_project 17 60833218 60866762 - MGP_C57BL6NJ_P0048755 Acsbg2 protein_coding protein_coding MGP_C57BL6NJ_T0047254.1 MGP_C57BL6NJ_G0023915.1 mouse_genomes_project 17 33613493 33634253 + MGP_C57BL6NJ_P0047254 Cyp4f40 protein_coding protein_coding MGP_C57BL6NJ_T0047191.1 MGP_C57BL6NJ_G0023898.1 mouse_genomes_project 17 32520418 32535205 - MGP_C57BL6NJ_P0047191 U2af1 protein_coding protein_coding MGP_C57BL6NJ_T0047192.1 MGP_C57BL6NJ_G0023898.1 mouse_genomes_project 17 32520418 32535205 - MGP_C57BL6NJ_P0047192 U2af1 protein_coding protein_coding MGP_C57BL6NJ_T0007132.1 MGP_C57BL6NJ_G0005869.1 mouse_genomes_project 17 53732098 53739255 + AY702103 lincRNA lincRNA MGP_C57BL6NJ_T0007133.1 MGP_C57BL6NJ_G0005869.1 mouse_genomes_project 17 53732294 53734415 + AY702103 lincRNA lincRNA MGP_C57BL6NJ_T0047854.1 MGP_C57BL6NJ_G0024046.1 mouse_genomes_project 17 37185588 37191720 + MGP_C57BL6NJ_P0047854 Cdsn protein_coding protein_coding MGP_C57BL6NJ_T0010389.1 MGP_C57BL6NJ_G0008474.1 mouse_genomes_project 17 16623914 16624031 - Gm25927 miRNA miRNA MGP_C57BL6NJ_T0046282.1 MGP_C57BL6NJ_G0023683.1 mouse_genomes_project 17 23749398 23756621 - MGP_C57BL6NJ_P0046282 Prss41 protein_coding protein_coding MGP_C57BL6NJ_T0046283.1 MGP_C57BL6NJ_G0023683.1 mouse_genomes_project 17 23753591 23756656 - MGP_C57BL6NJ_P0046283 Prss41 protein_coding protein_coding MGP_C57BL6NJ_T0046284.1 MGP_C57BL6NJ_G0023683.1 mouse_genomes_project 17 23754729 23756633 - Prss41 protein_coding retained_intron MGP_C57BL6NJ_T0049162.1 MGP_C57BL6NJ_G0024496.1 mouse_genomes_project 17 92591409 93113232 + MGP_C57BL6NJ_P0049162 Prkce protein_coding protein_coding MGP_C57BL6NJ_T0049163.1 MGP_C57BL6NJ_G0024496.1 mouse_genomes_project 17 92591443 92602219 + MGP_C57BL6NJ_P0049163 Prkce protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049164.1 MGP_C57BL6NJ_G0024496.1 mouse_genomes_project 17 92591798 93110728 + MGP_C57BL6NJ_P0049164 Prkce protein_coding protein_coding MGP_C57BL6NJ_T0049165.1 MGP_C57BL6NJ_G0024496.1 mouse_genomes_project 17 92934145 92939709 + Prkce protein_coding retained_intron MGP_C57BL6NJ_T0049166.1 MGP_C57BL6NJ_G0024496.1 mouse_genomes_project 17 92936910 92940054 + Prkce protein_coding retained_intron MGP_C57BL6NJ_T0102906.1 MGP_C57BL6NJ_G0040700.1 mouse_genomes_project 17 19560512 19568218 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010442.1 MGP_C57BL6NJ_G0008527.1 mouse_genomes_project 17 71887601 71887690 - Mir5709 miRNA miRNA MGP_C57BL6NJ_T0046652.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25988889 25995261 - MGP_C57BL6NJ_P0046652 Rhot2 protein_coding protein_coding MGP_C57BL6NJ_T0046653.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25989270 25991581 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046654.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25989272 25994873 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046655.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25989706 25991032 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046656.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25990486 25992095 - Rhot2 protein_coding processed_transcript MGP_C57BL6NJ_T0046657.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25991688 25992487 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046658.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25991769 25993547 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046659.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25991818 25992539 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046660.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25991992 25994716 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046661.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992000 25993553 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046662.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992037 25994728 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046663.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992192 25994827 - MGP_C57BL6NJ_P0046663 Rhot2 protein_coding protein_coding MGP_C57BL6NJ_T0046664.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992528 25994856 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0046665.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992684 25994935 - MGP_C57BL6NJ_P0046665 Rhot2 protein_coding protein_coding MGP_C57BL6NJ_T0046666.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992688 25994979 - Rhot2 protein_coding processed_transcript MGP_C57BL6NJ_T0046667.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25992814 25994952 - Rhot2 protein_coding processed_transcript MGP_C57BL6NJ_T0046668.1 MGP_C57BL6NJ_G0023782.1 mouse_genomes_project 17 25994184 25994940 - Rhot2 protein_coding retained_intron MGP_C57BL6NJ_T0047252.1 MGP_C57BL6NJ_G0023914.1 mouse_genomes_project 17 33567672 33590292 + MGP_C57BL6NJ_P0047252 protein_coding protein_coding MGP_C57BL6NJ_T0046418.1 MGP_C57BL6NJ_G0023724.1 mouse_genomes_project 17 24759997 24772175 - MGP_C57BL6NJ_P0046418 Tbl3 protein_coding protein_coding MGP_C57BL6NJ_T0046427.1 MGP_C57BL6NJ_G0023724.1 mouse_genomes_project 17 24762506 24772146 - Tbl3 protein_coding retained_intron MGP_C57BL6NJ_T0046428.1 MGP_C57BL6NJ_G0023724.1 mouse_genomes_project 17 24762934 24764556 - MGP_C57BL6NJ_P0046428 Tbl3 protein_coding protein_coding MGP_C57BL6NJ_T0046429.1 MGP_C57BL6NJ_G0023724.1 mouse_genomes_project 17 24764066 24765385 - Tbl3 protein_coding retained_intron MGP_C57BL6NJ_T0046430.1 MGP_C57BL6NJ_G0023724.1 mouse_genomes_project 17 24769160 24770339 - Tbl3 protein_coding retained_intron MGP_C57BL6NJ_T0046140.1 MGP_C57BL6NJ_G0023618.1 mouse_genomes_project 17 19743866 19744763 + MGP_C57BL6NJ_P0046140 Vmn1r225 protein_coding protein_coding MGP_C57BL6NJ_T0046157.1 MGP_C57BL6NJ_G0023629.1 mouse_genomes_project 17 20249283 20250243 - MGP_C57BL6NJ_P0046157 Vmn1r233 protein_coding protein_coding MGP_C57BL6NJ_T0100100.1 MGP_C57BL6NJ_G0038146.1 mouse_genomes_project 17 90550375 90550482 - Gm24492 snRNA snRNA MGP_C57BL6NJ_T0048861.1 MGP_C57BL6NJ_G0024391.1 mouse_genomes_project 17 70923940 70957336 + MGP_C57BL6NJ_P0048861 Ddx11 protein_coding protein_coding MGP_C57BL6NJ_T0048862.1 MGP_C57BL6NJ_G0024391.1 mouse_genomes_project 17 70924210 70953634 + MGP_C57BL6NJ_P0048862 Ddx11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013521.1 MGP_C57BL6NJ_G0011566.1 mouse_genomes_project 17 3120643 3121127 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048505.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 50995119 51060064 + MGP_C57BL6NJ_P0048505 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048506.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 50995689 51053729 + MGP_C57BL6NJ_P0048506 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048507.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 50996017 51060060 + MGP_C57BL6NJ_P0048507 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048508.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 50996992 51056715 + MGP_C57BL6NJ_P0048508 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048509.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51015198 51053729 + MGP_C57BL6NJ_P0048509 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048510.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51020023 51053841 + MGP_C57BL6NJ_P0048510 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048511.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51024018 51053942 + MGP_C57BL6NJ_P0048511 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048512.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51029986 51053946 + MGP_C57BL6NJ_P0048512 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048513.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51029986 51053944 + MGP_C57BL6NJ_P0048513 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048514.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51045660 51054022 + MGP_C57BL6NJ_P0048514 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048515.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51053364 51060060 + MGP_C57BL6NJ_P0048515 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048516.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51053799 51060061 + MGP_C57BL6NJ_P0048516 Tfeb protein_coding protein_coding MGP_C57BL6NJ_T0048517.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51055212 51057361 + Tfeb protein_coding processed_transcript MGP_C57BL6NJ_T0048518.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51055554 51056583 + Tfeb protein_coding retained_intron MGP_C57BL6NJ_T0048519.1 MGP_C57BL6NJ_G0024263.1 mouse_genomes_project 17 51057085 51059258 + Tfeb protein_coding retained_intron MGP_C57BL6NJ_T0101391.1 MGP_C57BL6NJ_G0039437.1 mouse_genomes_project 17 93536861 93536993 - Gm24648 snoRNA snoRNA MGP_C57BL6NJ_T0013585.1 MGP_C57BL6NJ_G0011630.1 mouse_genomes_project 17 42638873 42639605 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046853.1 MGP_C57BL6NJ_G0023825.1 mouse_genomes_project 17 27819947 27913652 - MGP_C57BL6NJ_P0046853 Grm4 protein_coding protein_coding MGP_C57BL6NJ_T0046854.1 MGP_C57BL6NJ_G0023825.1 mouse_genomes_project 17 27823464 27923675 - MGP_C57BL6NJ_P0046854 Grm4 protein_coding protein_coding MGP_C57BL6NJ_T0046855.1 MGP_C57BL6NJ_G0023825.1 mouse_genomes_project 17 27849545 27873282 - Grm4 protein_coding retained_intron MGP_C57BL6NJ_T0046856.1 MGP_C57BL6NJ_G0023825.1 mouse_genomes_project 17 27851018 27873033 - Grm4 protein_coding processed_transcript MGP_C57BL6NJ_T0048229.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47455661 47710946 - MGP_C57BL6NJ_P0048229 Runx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048230.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47568661 47711418 - MGP_C57BL6NJ_P0048230 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048231.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47568661 47794866 - MGP_C57BL6NJ_P0048231 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048232.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47570914 47710480 - MGP_C57BL6NJ_P0048232 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048233.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572185 47794650 - MGP_C57BL6NJ_P0048233 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048234.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572473 47710404 - MGP_C57BL6NJ_P0048234 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048235.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572473 47794295 - MGP_C57BL6NJ_P0048235 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048236.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572559 47794696 - MGP_C57BL6NJ_P0048236 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048237.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572655 47794866 - MGP_C57BL6NJ_P0048237 Runx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048238.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47572969 47710136 - MGP_C57BL6NJ_P0048238 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048239.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47600871 47710404 - MGP_C57BL6NJ_P0048239 Runx2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048240.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47605853 47709463 - MGP_C57BL6NJ_P0048240 Runx2 protein_coding protein_coding MGP_C57BL6NJ_T0048241.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47605949 47794333 - MGP_C57BL6NJ_P0048241 Runx2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048246.1 MGP_C57BL6NJ_G0024189.1 mouse_genomes_project 17 47793974 47794696 - Runx2 protein_coding retained_intron MGP_C57BL6NJ_T0007062.1 MGP_C57BL6NJ_G0005814.1 mouse_genomes_project 17 8218102 8223989 + 1700110C19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007063.1 MGP_C57BL6NJ_G0005814.1 mouse_genomes_project 17 8218102 8223989 + 1700110C19Rik lincRNA lincRNA MGP_C57BL6NJ_T0101371.1 MGP_C57BL6NJ_G0039417.1 mouse_genomes_project 17 30695751 30695859 - Gm22327 snoRNA snoRNA MGP_C57BL6NJ_T0047383.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35132204 35133157 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047384.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35132243 35140335 + MGP_C57BL6NJ_P0047384 Rgl2 protein_coding protein_coding MGP_C57BL6NJ_T0047385.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35132565 35134866 + Rgl2 protein_coding processed_transcript MGP_C57BL6NJ_T0047386.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35132635 35135031 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047387.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35133544 35134689 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047388.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35133553 35135173 + Rgl2 protein_coding processed_transcript MGP_C57BL6NJ_T0047389.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35133569 35134606 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047390.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35133870 35135163 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047391.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35134711 35135877 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047392.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35134790 35135800 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0047393.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35136584 35139872 + MGP_C57BL6NJ_P0047393 Rgl2 protein_coding protein_coding MGP_C57BL6NJ_T0047394.1 MGP_C57BL6NJ_G0023950.1 mouse_genomes_project 17 35138047 35139538 + Rgl2 protein_coding retained_intron MGP_C57BL6NJ_T0046431.1 MGP_C57BL6NJ_G0023725.1 mouse_genomes_project 17 24782101 24784320 - MGP_C57BL6NJ_P0046431 Rnf151 protein_coding protein_coding MGP_C57BL6NJ_T0049117.1 MGP_C57BL6NJ_G0024477.1 mouse_genomes_project 17 89534136 89670835 + MGP_C57BL6NJ_P0049117 Eml4 protein_coding protein_coding MGP_C57BL6NJ_T0049118.1 MGP_C57BL6NJ_G0024477.1 mouse_genomes_project 17 89534136 89670835 + MGP_C57BL6NJ_P0049118 Eml4 protein_coding protein_coding MGP_C57BL6NJ_T0049119.1 MGP_C57BL6NJ_G0024477.1 mouse_genomes_project 17 89534136 89670835 + MGP_C57BL6NJ_P0049119 Eml4 protein_coding protein_coding MGP_C57BL6NJ_T0046883.1 MGP_C57BL6NJ_G0023830.1 mouse_genomes_project 17 28091071 28158908 + MGP_C57BL6NJ_P0046883 Pacsin1 protein_coding protein_coding MGP_C57BL6NJ_T0046884.1 MGP_C57BL6NJ_G0023830.1 mouse_genomes_project 17 28091150 28161355 + MGP_C57BL6NJ_P0046884 Pacsin1 protein_coding protein_coding MGP_C57BL6NJ_T0046885.1 MGP_C57BL6NJ_G0023830.1 mouse_genomes_project 17 28091205 28158926 + MGP_C57BL6NJ_P0046885 Pacsin1 protein_coding protein_coding MGP_C57BL6NJ_T0046886.1 MGP_C57BL6NJ_G0023830.1 mouse_genomes_project 17 28125522 28158908 + MGP_C57BL6NJ_P0046886 Pacsin1 protein_coding protein_coding MGP_C57BL6NJ_T0046887.1 MGP_C57BL6NJ_G0023830.1 mouse_genomes_project 17 28125552 28127798 + Pacsin1 protein_coding processed_transcript MGP_C57BL6NJ_T0013609.1 MGP_C57BL6NJ_G0011654.1 mouse_genomes_project 17 74314775 74316062 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045898.1 MGP_C57BL6NJ_G0023536.1 mouse_genomes_project 17 5446351 5456022 + MGP_C57BL6NJ_P0045898 protein_coding protein_coding MGP_C57BL6NJ_T0047999.1 MGP_C57BL6NJ_G0024071.1 mouse_genomes_project 17 37964563 37968644 - MGP_C57BL6NJ_P0047999 Gm8909 protein_coding protein_coding MGP_C57BL6NJ_T0048000.1 MGP_C57BL6NJ_G0024071.1 mouse_genomes_project 17 37964564 37968658 - MGP_C57BL6NJ_P0048000 Gm8909 protein_coding protein_coding MGP_C57BL6NJ_T0048001.1 MGP_C57BL6NJ_G0024071.1 mouse_genomes_project 17 37965093 37968628 - MGP_C57BL6NJ_P0048001 Gm8909 protein_coding protein_coding MGP_C57BL6NJ_T0048002.1 MGP_C57BL6NJ_G0024071.1 mouse_genomes_project 17 37965488 37967965 - Gm8909 protein_coding processed_transcript MGP_C57BL6NJ_T0048003.1 MGP_C57BL6NJ_G0024071.1 mouse_genomes_project 17 37965584 37968008 - Gm8909 protein_coding processed_transcript MGP_C57BL6NJ_T0048418.1 MGP_C57BL6NJ_G0024232.1 mouse_genomes_project 17 49810636 49813070 + MGP_C57BL6NJ_P0048418 Mea1 protein_coding protein_coding MGP_C57BL6NJ_T0049161.1 MGP_C57BL6NJ_G0024495.1 mouse_genomes_project 17 92389794 92567080 - MGP_C57BL6NJ_P0049161 Srbd1 protein_coding protein_coding MGP_C57BL6NJ_T0049113.1 MGP_C57BL6NJ_G0024476.1 mouse_genomes_project 17 89379373 89390854 + MGP_C57BL6NJ_P0049113 protein_coding protein_coding MGP_C57BL6NJ_T0049114.1 MGP_C57BL6NJ_G0024476.1 mouse_genomes_project 17 89384316 89385997 + protein_coding processed_transcript MGP_C57BL6NJ_T0049115.1 MGP_C57BL6NJ_G0024476.1 mouse_genomes_project 17 89384316 89390048 + MGP_C57BL6NJ_P0049115 protein_coding protein_coding MGP_C57BL6NJ_T0049116.1 MGP_C57BL6NJ_G0024476.1 mouse_genomes_project 17 89385289 89390359 + protein_coding processed_transcript MGP_C57BL6NJ_T0046893.1 MGP_C57BL6NJ_G0023832.1 mouse_genomes_project 17 28205352 28278591 - MGP_C57BL6NJ_P0046893 D17Wsu92e protein_coding protein_coding MGP_C57BL6NJ_T0046894.1 MGP_C57BL6NJ_G0023832.1 mouse_genomes_project 17 28205366 28278524 - MGP_C57BL6NJ_P0046894 D17Wsu92e protein_coding protein_coding MGP_C57BL6NJ_T0046895.1 MGP_C57BL6NJ_G0023832.1 mouse_genomes_project 17 28221605 28278575 - MGP_C57BL6NJ_P0046895 D17Wsu92e protein_coding protein_coding MGP_C57BL6NJ_T0049135.1 MGP_C57BL6NJ_G0024483.1 mouse_genomes_project 17 90443673 90741452 - MGP_C57BL6NJ_P0049135 Thada protein_coding protein_coding MGP_C57BL6NJ_T0047286.1 MGP_C57BL6NJ_G0023926.1 mouse_genomes_project 17 34078019 34081935 - MGP_C57BL6NJ_P0047286 4921501E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0100101.1 MGP_C57BL6NJ_G0038147.1 mouse_genomes_project 17 90658546 90658653 + Gm24722 snRNA snRNA MGP_C57BL6NJ_T0045950.1 MGP_C57BL6NJ_G0023551.1 mouse_genomes_project 17 8094336 8213257 - MGP_C57BL6NJ_P0045950 Qk protein_coding protein_coding MGP_C57BL6NJ_T0045951.1 MGP_C57BL6NJ_G0023551.1 mouse_genomes_project 17 8098044 8213257 - MGP_C57BL6NJ_P0045951 Qk protein_coding protein_coding MGP_C57BL6NJ_T0045963.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10152754 10246386 + MGP_C57BL6NJ_P0045963 Agpat4 protein_coding protein_coding MGP_C57BL6NJ_T0045964.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10153334 10256453 + MGP_C57BL6NJ_P0045964 Agpat4 protein_coding protein_coding MGP_C57BL6NJ_T0045965.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10153379 10175387 + Agpat4 protein_coding processed_transcript MGP_C57BL6NJ_T0045966.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10168943 10246037 + MGP_C57BL6NJ_P0045966 Agpat4 protein_coding protein_coding MGP_C57BL6NJ_T0045967.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10187476 10255887 + MGP_C57BL6NJ_P0045967 Agpat4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045968.1 MGP_C57BL6NJ_G0023554.1 mouse_genomes_project 17 10251932 10256061 + Agpat4 protein_coding retained_intron MGP_C57BL6NJ_T0048986.1 MGP_C57BL6NJ_G0024422.1 mouse_genomes_project 17 78184911 78214106 + MGP_C57BL6NJ_P0048986 Lbh protein_coding protein_coding MGP_C57BL6NJ_T0048987.1 MGP_C57BL6NJ_G0024422.1 mouse_genomes_project 17 78190230 78208405 + MGP_C57BL6NJ_P0048987 Lbh protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102194.1 MGP_C57BL6NJ_G0040207.1 mouse_genomes_project 17 26059718 26059910 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0101386.1 MGP_C57BL6NJ_G0039432.1 mouse_genomes_project 17 76815547 76815623 + Gm22858 snoRNA snoRNA MGP_C57BL6NJ_T0048806.1 MGP_C57BL6NJ_G0024373.1 mouse_genomes_project 17 63127789 63142420 - MGP_C57BL6NJ_P0048806 Nudt12 protein_coding protein_coding MGP_C57BL6NJ_T0048807.1 MGP_C57BL6NJ_G0024373.1 mouse_genomes_project 17 63128282 63132755 - Nudt12 protein_coding retained_intron MGP_C57BL6NJ_T0048808.1 MGP_C57BL6NJ_G0024373.1 mouse_genomes_project 17 63135442 63142316 - MGP_C57BL6NJ_P0048808 Nudt12 protein_coding protein_coding MGP_C57BL6NJ_T0007125.1 MGP_C57BL6NJ_G0005866.1 mouse_genomes_project 17 49583493 49974005 + lincRNA lincRNA MGP_C57BL6NJ_T0007149.1 MGP_C57BL6NJ_G0005879.1 mouse_genomes_project 17 75954282 76532987 + lincRNA lincRNA MGP_C57BL6NJ_T0102981.1 MGP_C57BL6NJ_G0040775.1 mouse_genomes_project 17 57625366 57625927 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010443.1 MGP_C57BL6NJ_G0008528.1 mouse_genomes_project 17 75932667 75932765 - Mir1195 miRNA miRNA MGP_C57BL6NJ_T0048542.1 MGP_C57BL6NJ_G0024270.1 mouse_genomes_project 17 51620351 51636328 + MGP_C57BL6NJ_P0048542 Trem3 protein_coding protein_coding MGP_C57BL6NJ_T0007165.1 MGP_C57BL6NJ_G0005892.1 mouse_genomes_project 17 101937147 102036354 - lincRNA lincRNA MGP_C57BL6NJ_T0007166.1 MGP_C57BL6NJ_G0005892.1 mouse_genomes_project 17 101938453 101941745 - lincRNA lincRNA MGP_C57BL6NJ_T0007102.1 MGP_C57BL6NJ_G0005846.1 mouse_genomes_project 17 33301228 33304948 + lincRNA lincRNA MGP_C57BL6NJ_T0048901.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946545 75888875 + MGP_C57BL6NJ_P0048901 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048902.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946718 75887186 + MGP_C57BL6NJ_P0048902 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048903.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946840 75533666 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048904.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946840 75062059 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048905.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946845 75699838 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048906.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946874 75883259 + MGP_C57BL6NJ_P0048906 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048907.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 74946893 75621293 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048908.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75432205 75887266 + MGP_C57BL6NJ_P0048908 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048909.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75530881 75885696 + MGP_C57BL6NJ_P0048909 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048910.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75539161 75622630 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048911.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75539220 75850819 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048912.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75539220 75888871 + MGP_C57BL6NJ_P0048912 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048913.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75539229 75886007 + MGP_C57BL6NJ_P0048913 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048914.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75539246 75885764 + MGP_C57BL6NJ_P0048914 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0048915.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75583805 75765307 + Dlgap1 protein_coding retained_intron MGP_C57BL6NJ_T0048916.1 MGP_C57BL6NJ_G0024404.1 mouse_genomes_project 17 75584040 75883555 + MGP_C57BL6NJ_P0048916 Dlgap1 protein_coding protein_coding MGP_C57BL6NJ_T0049102.1 MGP_C57BL6NJ_G0024468.1 mouse_genomes_project 17 86487547 86531419 - MGP_C57BL6NJ_P0049102 Cdkl4 protein_coding protein_coding MGP_C57BL6NJ_T0013520.1 MGP_C57BL6NJ_G0011565.1 mouse_genomes_project 17 2364130 2364414 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049142.1 MGP_C57BL6NJ_G0024487.1 mouse_genomes_project 17 90977000 90997723 + MGP_C57BL6NJ_P0049142 Abcg8 protein_coding protein_coding MGP_C57BL6NJ_T0049143.1 MGP_C57BL6NJ_G0024487.1 mouse_genomes_project 17 90977111 90996189 + MGP_C57BL6NJ_P0049143 Abcg8 protein_coding protein_coding MGP_C57BL6NJ_T0102980.1 MGP_C57BL6NJ_G0040774.1 mouse_genomes_project 17 57545052 57545672 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047684.1 MGP_C57BL6NJ_G0024008.1 mouse_genomes_project 17 36442161 36451465 + MGP_C57BL6NJ_P0047684 Hspa1l protein_coding protein_coding MGP_C57BL6NJ_T0102930.1 MGP_C57BL6NJ_G0040724.1 mouse_genomes_project 17 35849953 35850108 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0003937.1 MGP_C57BL6NJ_G0003528.1 mouse_genomes_project 17 75902945 75904326 + Gm20703 antisense antisense MGP_C57BL6NJ_T0048624.1 MGP_C57BL6NJ_G0024291.1 mouse_genomes_project 17 56224311 56617765 + MGP_C57BL6NJ_P0048624 Kcnh8 protein_coding protein_coding MGP_C57BL6NJ_T0048625.1 MGP_C57BL6NJ_G0024291.1 mouse_genomes_project 17 56584557 56616950 + Kcnh8 protein_coding retained_intron MGP_C57BL6NJ_T0048786.1 MGP_C57BL6NJ_G0024364.1 mouse_genomes_project 17 61267677 61293597 - MGP_C57BL6NJ_P0048786 C3 protein_coding protein_coding MGP_C57BL6NJ_T0048787.1 MGP_C57BL6NJ_G0024364.1 mouse_genomes_project 17 61267714 61288288 - MGP_C57BL6NJ_P0048787 C3 protein_coding protein_coding MGP_C57BL6NJ_T0048788.1 MGP_C57BL6NJ_G0024364.1 mouse_genomes_project 17 61269924 61293464 - MGP_C57BL6NJ_P0048788 C3 protein_coding protein_coding MGP_C57BL6NJ_T0048789.1 MGP_C57BL6NJ_G0024364.1 mouse_genomes_project 17 61281260 61285445 - C3 protein_coding processed_transcript MGP_C57BL6NJ_T0048917.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75914508 75920094 - MGP_C57BL6NJ_P0048917 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048918.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75914508 75921508 - MGP_C57BL6NJ_P0048918 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048919.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75914514 75923875 - MGP_C57BL6NJ_P0048919 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048920.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75914514 75921370 - MGP_C57BL6NJ_P0048920 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048921.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75914514 75922056 - MGP_C57BL6NJ_P0048921 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048922.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75915031 75920094 - MGP_C57BL6NJ_P0048922 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048923.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75915172 75916630 - MGP_C57BL6NJ_P0048923 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048924.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75915284 75917474 - MGP_C57BL6NJ_P0048924 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048925.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75916484 75919948 - MGP_C57BL6NJ_P0048925 Tgif1 protein_coding protein_coding MGP_C57BL6NJ_T0048926.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75916598 75921432 - Tgif1 protein_coding processed_transcript MGP_C57BL6NJ_T0048927.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75916973 75920118 - Tgif1 protein_coding retained_intron MGP_C57BL6NJ_T0048928.1 MGP_C57BL6NJ_G0024405.1 mouse_genomes_project 17 75918677 75920111 - Tgif1 protein_coding processed_transcript MGP_C57BL6NJ_T0047319.1 MGP_C57BL6NJ_G0023938.1 mouse_genomes_project 17 34778423 34780280 + Zfp414 protein_coding retained_intron MGP_C57BL6NJ_T0047320.1 MGP_C57BL6NJ_G0023938.1 mouse_genomes_project 17 34778536 34780929 + MGP_C57BL6NJ_P0047320 Zfp414 protein_coding protein_coding MGP_C57BL6NJ_T0047321.1 MGP_C57BL6NJ_G0023938.1 mouse_genomes_project 17 34779523 34780094 + Zfp414 protein_coding retained_intron MGP_C57BL6NJ_T0047322.1 MGP_C57BL6NJ_G0023938.1 mouse_genomes_project 17 34780411 34781013 + Zfp414 protein_coding retained_intron MGP_C57BL6NJ_T0003923.1 MGP_C57BL6NJ_G0003518.1 mouse_genomes_project 17 48703052 48707556 + antisense antisense MGP_C57BL6NJ_T0048856.1 MGP_C57BL6NJ_G0024389.1 mouse_genomes_project 17 70878760 70902287 - MGP_C57BL6NJ_P0048856 Ndufv2 protein_coding protein_coding MGP_C57BL6NJ_T0048857.1 MGP_C57BL6NJ_G0024389.1 mouse_genomes_project 17 70878768 70902317 - MGP_C57BL6NJ_P0048857 Ndufv2 protein_coding protein_coding MGP_C57BL6NJ_T0048858.1 MGP_C57BL6NJ_G0024389.1 mouse_genomes_project 17 70887652 70902331 - MGP_C57BL6NJ_P0048858 Ndufv2 protein_coding protein_coding MGP_C57BL6NJ_T0007151.1 MGP_C57BL6NJ_G0005881.1 mouse_genomes_project 17 84700796 84710718 + Gm26637 lincRNA lincRNA MGP_C57BL6NJ_T0013532.1 MGP_C57BL6NJ_G0011577.1 mouse_genomes_project 17 12163528 12173751 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047755.1 MGP_C57BL6NJ_G0024023.1 mouse_genomes_project 17 36594768 36596249 - MGP_C57BL6NJ_P0047755 Ly6g5b protein_coding protein_coding MGP_C57BL6NJ_T0047756.1 MGP_C57BL6NJ_G0024023.1 mouse_genomes_project 17 36594802 36596249 - MGP_C57BL6NJ_P0047756 Ly6g5b protein_coding protein_coding MGP_C57BL6NJ_T0049049.1 MGP_C57BL6NJ_G0024443.1 mouse_genomes_project 17 84447489 84545822 - MGP_C57BL6NJ_P0049049 Strn protein_coding protein_coding MGP_C57BL6NJ_T0049050.1 MGP_C57BL6NJ_G0024443.1 mouse_genomes_project 17 84464348 84483917 - MGP_C57BL6NJ_P0049050 Strn protein_coding protein_coding MGP_C57BL6NJ_T0046375.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549504 24570533 - MGP_C57BL6NJ_P0046375 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046376.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24553431 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046377.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24570445 - MGP_C57BL6NJ_P0046377 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046378.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24570485 - MGP_C57BL6NJ_P0046378 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046379.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24561817 - MGP_C57BL6NJ_P0046379 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046380.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24570441 - MGP_C57BL6NJ_P0046380 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046381.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549792 24561817 - MGP_C57BL6NJ_P0046381 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046382.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24549796 24551976 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046383.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24551004 24551454 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046384.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24551155 24553315 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046385.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24551427 24553510 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046386.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24552539 24555948 - MGP_C57BL6NJ_P0046386 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046387.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24552630 24557347 - MGP_C57BL6NJ_P0046387 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046388.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24553189 24570458 - MGP_C57BL6NJ_P0046388 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046389.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555239 24555847 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046390.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555667 24570084 - MGP_C57BL6NJ_P0046390 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046391.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555850 24570441 - MGP_C57BL6NJ_P0046391 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046392.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555862 24570428 - MGP_C57BL6NJ_P0046392 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046393.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555869 24570506 - MGP_C57BL6NJ_P0046393 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046394.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24555945 24570143 - MGP_C57BL6NJ_P0046394 Traf7 protein_coding protein_coding MGP_C57BL6NJ_T0046395.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24556529 24570441 - MGP_C57BL6NJ_P0046395 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046396.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24557327 24570416 - MGP_C57BL6NJ_P0046396 Traf7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046397.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24558908 24570445 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0046398.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24559167 24570463 - Traf7 protein_coding processed_transcript MGP_C57BL6NJ_T0046399.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24560980 24570446 - Traf7 protein_coding processed_transcript MGP_C57BL6NJ_T0046400.1 MGP_C57BL6NJ_G0023714.1 mouse_genomes_project 17 24561181 24570379 - Traf7 protein_coding retained_intron MGP_C57BL6NJ_T0102963.1 MGP_C57BL6NJ_G0040757.1 mouse_genomes_project 17 38632318 38634428 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048030.1 MGP_C57BL6NJ_G0024078.1 mouse_genomes_project 17 38229812 38232837 - MGP_C57BL6NJ_P0048030 H2-M10.3 protein_coding protein_coding MGP_C57BL6NJ_T0007065.1 MGP_C57BL6NJ_G0005816.1 mouse_genomes_project 17 11603053 11605263 + lincRNA lincRNA MGP_C57BL6NJ_T0011699.1 MGP_C57BL6NJ_G0009784.1 mouse_genomes_project 17 91991850 91992073 + Gm27801 misc_RNA misc_RNA MGP_C57BL6NJ_T0046252.1 MGP_C57BL6NJ_G0023673.1 mouse_genomes_project 17 23579472 23580907 - MGP_C57BL6NJ_P0046252 Cldn9 protein_coding protein_coding MGP_C57BL6NJ_T0007104.1 MGP_C57BL6NJ_G0005848.1 mouse_genomes_project 17 35295883 35295988 - Gm26940 lincRNA lincRNA MGP_C57BL6NJ_T0049099.1 MGP_C57BL6NJ_G0024465.1 mouse_genomes_project 17 86256375 86343755 + MGP_C57BL6NJ_P0049099 Arhgef33 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049061.1 MGP_C57BL6NJ_G0024448.1 mouse_genomes_project 17 84737935 84742604 + MGP_C57BL6NJ_P0049061 Cebpzos protein_coding protein_coding MGP_C57BL6NJ_T0049062.1 MGP_C57BL6NJ_G0024448.1 mouse_genomes_project 17 84737952 84742604 + MGP_C57BL6NJ_P0049062 Cebpzos protein_coding protein_coding MGP_C57BL6NJ_T0049063.1 MGP_C57BL6NJ_G0024448.1 mouse_genomes_project 17 84738135 84740736 + MGP_C57BL6NJ_P0049063 Cebpzos protein_coding protein_coding MGP_C57BL6NJ_T0003856.1 MGP_C57BL6NJ_G0003473.1 mouse_genomes_project 17 5405339 5472984 - antisense antisense MGP_C57BL6NJ_T0003857.1 MGP_C57BL6NJ_G0003473.1 mouse_genomes_project 17 5450896 5483017 - antisense antisense MGP_C57BL6NJ_T0003858.1 MGP_C57BL6NJ_G0003473.1 mouse_genomes_project 17 5453884 5472910 - antisense antisense MGP_C57BL6NJ_T0046131.1 MGP_C57BL6NJ_G0023609.1 mouse_genomes_project 17 18936254 18989029 + MGP_C57BL6NJ_P0046131 Vmn2r103 protein_coding protein_coding MGP_C57BL6NJ_T0049004.1 MGP_C57BL6NJ_G0024432.1 mouse_genomes_project 17 79783483 79813883 + MGP_C57BL6NJ_P0049004 Slc30a6 protein_coding protein_coding MGP_C57BL6NJ_T0049005.1 MGP_C57BL6NJ_G0024432.1 mouse_genomes_project 17 79783483 79813883 + MGP_C57BL6NJ_P0049005 Slc30a6 protein_coding protein_coding MGP_C57BL6NJ_T0013613.1 MGP_C57BL6NJ_G0011658.1 mouse_genomes_project 17 77942914 77943855 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047729.1 MGP_C57BL6NJ_G0024015.1 mouse_genomes_project 17 36535891 36538857 + MGP_C57BL6NJ_P0047729 Ddah2 protein_coding protein_coding MGP_C57BL6NJ_T0047730.1 MGP_C57BL6NJ_G0024015.1 mouse_genomes_project 17 36536577 36537668 + MGP_C57BL6NJ_P0047730 Ddah2 protein_coding protein_coding MGP_C57BL6NJ_T0047731.1 MGP_C57BL6NJ_G0024015.1 mouse_genomes_project 17 36537654 36538387 + Ddah2 protein_coding retained_intron MGP_C57BL6NJ_T0048602.1 MGP_C57BL6NJ_G0024285.1 mouse_genomes_project 17 53486803 53680356 - MGP_C57BL6NJ_P0048602 Rftn1 protein_coding protein_coding MGP_C57BL6NJ_T0048603.1 MGP_C57BL6NJ_G0024285.1 mouse_genomes_project 17 53529315 53680541 - Rftn1 protein_coding retained_intron MGP_C57BL6NJ_T0048037.1 MGP_C57BL6NJ_G0024083.1 mouse_genomes_project 17 38705092 38711310 + MGP_C57BL6NJ_P0048037 H2-M10.5 protein_coding protein_coding MGP_C57BL6NJ_T0001119.1 MGP_C57BL6NJ_G0001025.1 mouse_genomes_project 17 55341851 55346203 - TEC TEC MGP_C57BL6NJ_T0049156.1 MGP_C57BL6NJ_G0024493.1 mouse_genomes_project 17 91992076 92004496 + MGP_C57BL6NJ_P0049156 Six3 protein_coding protein_coding MGP_C57BL6NJ_T0049157.1 MGP_C57BL6NJ_G0024493.1 mouse_genomes_project 17 92000123 92005465 + MGP_C57BL6NJ_P0049157 Six3 protein_coding protein_coding MGP_C57BL6NJ_T0049158.1 MGP_C57BL6NJ_G0024493.1 mouse_genomes_project 17 92000316 92008576 + MGP_C57BL6NJ_P0049158 Six3 protein_coding protein_coding MGP_C57BL6NJ_T0047073.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30034878 30055967 + MGP_C57BL6NJ_P0047073 Fgd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047074.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30034896 30038824 + Fgd2 protein_coding processed_transcript MGP_C57BL6NJ_T0047075.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30034906 30040771 + Fgd2 protein_coding retained_intron MGP_C57BL6NJ_T0047076.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30034906 30055860 + MGP_C57BL6NJ_P0047076 Fgd2 protein_coding protein_coding MGP_C57BL6NJ_T0047077.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30039201 30041726 + Fgd2 protein_coding retained_intron MGP_C57BL6NJ_T0047078.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30042731 30048733 + Fgd2 protein_coding retained_intron MGP_C57BL6NJ_T0047079.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30042743 30048113 + Fgd2 protein_coding retained_intron MGP_C57BL6NJ_T0047080.1 MGP_C57BL6NJ_G0023869.1 mouse_genomes_project 17 30050249 30054759 + Fgd2 protein_coding processed_transcript MGP_C57BL6NJ_T0048748.1 MGP_C57BL6NJ_G0024341.1 mouse_genomes_project 17 60694613 60701100 + MGP_C57BL6NJ_P0048748 Ndufa11 protein_coding protein_coding MGP_C57BL6NJ_T0013586.1 MGP_C57BL6NJ_G0011631.1 mouse_genomes_project 17 44015308 44016309 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046824.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27271607 27307153 + MGP_C57BL6NJ_P0046824 Syngap1 protein_coding protein_coding MGP_C57BL6NJ_T0046825.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27271796 27305417 + MGP_C57BL6NJ_P0046825 Syngap1 protein_coding protein_coding MGP_C57BL6NJ_T0046826.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27271806 27305377 + MGP_C57BL6NJ_P0046826 Syngap1 protein_coding protein_coding MGP_C57BL6NJ_T0046827.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27271853 27305957 + MGP_C57BL6NJ_P0046827 Syngap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046828.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27283495 27305769 + MGP_C57BL6NJ_P0046828 Syngap1 protein_coding protein_coding MGP_C57BL6NJ_T0046829.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27290755 27307153 + MGP_C57BL6NJ_P0046829 Syngap1 protein_coding protein_coding MGP_C57BL6NJ_T0046830.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27291211 27293497 + MGP_C57BL6NJ_P0046830 Syngap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046831.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27293223 27293941 + Syngap1 protein_coding retained_intron MGP_C57BL6NJ_T0046832.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27295691 27305398 + MGP_C57BL6NJ_P0046832 Syngap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046833.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27296379 27305427 + MGP_C57BL6NJ_P0046833 Syngap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046834.1 MGP_C57BL6NJ_G0023817.1 mouse_genomes_project 17 27296393 27305423 + MGP_C57BL6NJ_P0046834 Syngap1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018068.1 MGP_C57BL6NJ_G0015749.1 mouse_genomes_project 17 97702032 97707966 + 4930480K15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0046238.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564479 23565509 - Thoc6 protein_coding retained_intron MGP_C57BL6NJ_T0046239.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564483 23570715 - Thoc6 protein_coding retained_intron MGP_C57BL6NJ_T0046240.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564483 23570755 - MGP_C57BL6NJ_P0046240 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046241.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564483 23570715 - MGP_C57BL6NJ_P0046241 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046242.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564662 23570478 - MGP_C57BL6NJ_P0046242 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046243.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23564662 23570702 - MGP_C57BL6NJ_P0046243 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046244.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23565065 23566375 - MGP_C57BL6NJ_P0046244 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046245.1 MGP_C57BL6NJ_G0023669.1 mouse_genomes_project 17 23566187 23570744 - MGP_C57BL6NJ_P0046245 Thoc6 protein_coding protein_coding MGP_C57BL6NJ_T0046222.1 MGP_C57BL6NJ_G0023665.1 mouse_genomes_project 17 23457360 23469305 - MGP_C57BL6NJ_P0046222 Zfp13 protein_coding protein_coding MGP_C57BL6NJ_T0046223.1 MGP_C57BL6NJ_G0023665.1 mouse_genomes_project 17 23457367 23484667 - MGP_C57BL6NJ_P0046223 Zfp13 protein_coding protein_coding MGP_C57BL6NJ_T0018012.1 MGP_C57BL6NJ_G0015732.1 mouse_genomes_project 17 24207627 24221127 + BC028777 processed_transcript processed_transcript MGP_C57BL6NJ_T0018013.1 MGP_C57BL6NJ_G0015732.1 mouse_genomes_project 17 24211318 24221312 + BC028777 processed_transcript processed_transcript MGP_C57BL6NJ_T0047195.1 MGP_C57BL6NJ_G0023901.1 mouse_genomes_project 17 32858951 32946469 - MGP_C57BL6NJ_P0047195 Hsf2bp protein_coding protein_coding MGP_C57BL6NJ_T0047196.1 MGP_C57BL6NJ_G0023901.1 mouse_genomes_project 17 32923401 32935182 - Hsf2bp protein_coding processed_transcript MGP_C57BL6NJ_T0003931.1 MGP_C57BL6NJ_G0003524.1 mouse_genomes_project 17 61057059 61063338 + Gm17168 antisense antisense MGP_C57BL6NJ_T0046984.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29144788 29185316 - MGP_C57BL6NJ_P0046984 Srpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046985.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29146681 29165393 - MGP_C57BL6NJ_P0046985 Srpk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046986.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29147079 29149516 - Srpk1 protein_coding retained_intron MGP_C57BL6NJ_T0046987.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29152548 29157928 - Srpk1 protein_coding retained_intron MGP_C57BL6NJ_T0046988.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29157377 29158305 - Srpk1 protein_coding retained_intron MGP_C57BL6NJ_T0046989.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29159555 29185246 - Srpk1 protein_coding retained_intron MGP_C57BL6NJ_T0046990.1 MGP_C57BL6NJ_G0023851.1 mouse_genomes_project 17 29182937 29185267 - MGP_C57BL6NJ_P0046990 Srpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046118.1 MGP_C57BL6NJ_G0023597.1 mouse_genomes_project 17 16737181 16738090 - MGP_C57BL6NJ_P0046118 Gm7535 protein_coding protein_coding MGP_C57BL6NJ_T0046163.1 MGP_C57BL6NJ_G0023635.1 mouse_genomes_project 17 20772034 20790809 + MGP_C57BL6NJ_P0046163 Zfp677 protein_coding protein_coding MGP_C57BL6NJ_T0046164.1 MGP_C57BL6NJ_G0023635.1 mouse_genomes_project 17 20772034 20790806 + MGP_C57BL6NJ_P0046164 Zfp677 protein_coding protein_coding MGP_C57BL6NJ_T0048684.1 MGP_C57BL6NJ_G0024321.1 mouse_genomes_project 17 60094567 60105972 + MGP_C57BL6NJ_P0048684 Tnfaip8l1 protein_coding protein_coding MGP_C57BL6NJ_T0046035.1 MGP_C57BL6NJ_G0023572.1 mouse_genomes_project 17 12573558 12586386 - MGP_C57BL6NJ_P0046035 Dact2 protein_coding protein_coding MGP_C57BL6NJ_T0048685.1 MGP_C57BL6NJ_G0024322.1 mouse_genomes_project 17 60107812 60117767 - MGP_C57BL6NJ_P0048685 Mydgf protein_coding protein_coding MGP_C57BL6NJ_T0048686.1 MGP_C57BL6NJ_G0024322.1 mouse_genomes_project 17 60110164 60117696 - Mydgf protein_coding retained_intron MGP_C57BL6NJ_T0048687.1 MGP_C57BL6NJ_G0024322.1 mouse_genomes_project 17 60113232 60117511 - Mydgf protein_coding processed_transcript MGP_C57BL6NJ_T0049210.1 MGP_C57BL6NJ_G0024511.1 mouse_genomes_project 17 94313608 94365321 - MGP_C57BL6NJ_P0049210 Kcnk12 protein_coding protein_coding MGP_C57BL6NJ_T0049074.1 MGP_C57BL6NJ_G0024452.1 mouse_genomes_project 17 84883887 84922481 + MGP_C57BL6NJ_P0049074 Qpct protein_coding protein_coding MGP_C57BL6NJ_T0007083.1 MGP_C57BL6NJ_G0005831.1 mouse_genomes_project 17 27118537 27156296 - Gm17382 lincRNA lincRNA MGP_C57BL6NJ_T0046588.1 MGP_C57BL6NJ_G0023763.1 mouse_genomes_project 17 25622310 25629724 - MGP_C57BL6NJ_P0046588 Sstr5 protein_coding protein_coding MGP_C57BL6NJ_T0046589.1 MGP_C57BL6NJ_G0023763.1 mouse_genomes_project 17 25622310 25629724 - MGP_C57BL6NJ_P0046589 Sstr5 protein_coding protein_coding MGP_C57BL6NJ_T0007086.1 MGP_C57BL6NJ_G0005834.1 mouse_genomes_project 17 27738511 27740877 + Gm10505 lincRNA lincRNA MGP_C57BL6NJ_T0048379.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49539784 49542625 + MGP_C57BL6NJ_P0048379 Crip3 protein_coding protein_coding MGP_C57BL6NJ_T0048380.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49539800 49542426 + Crip3 protein_coding retained_intron MGP_C57BL6NJ_T0048381.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49539800 49542620 + MGP_C57BL6NJ_P0048381 Crip3 protein_coding protein_coding MGP_C57BL6NJ_T0048382.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49539809 49542264 + MGP_C57BL6NJ_P0048382 Crip3 protein_coding protein_coding MGP_C57BL6NJ_T0048383.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49539828 49541334 + Crip3 protein_coding processed_transcript MGP_C57BL6NJ_T0048384.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49541523 49542571 + Crip3 protein_coding retained_intron MGP_C57BL6NJ_T0048385.1 MGP_C57BL6NJ_G0024219.1 mouse_genomes_project 17 49541813 49542546 + Crip3 protein_coding retained_intron MGP_C57BL6NJ_T0046159.1 MGP_C57BL6NJ_G0023631.1 mouse_genomes_project 17 20598669 20599659 + MGP_C57BL6NJ_P0046159 Vmn1r234 protein_coding protein_coding MGP_C57BL6NJ_T0048145.1 MGP_C57BL6NJ_G0024135.1 mouse_genomes_project 17 40039153 40040125 - MGP_C57BL6NJ_P0048145 protein_coding protein_coding MGP_C57BL6NJ_T0003925.1 MGP_C57BL6NJ_G0003520.1 mouse_genomes_project 17 50953777 50955803 - Frs3os antisense antisense MGP_C57BL6NJ_T0003926.1 MGP_C57BL6NJ_G0003520.1 mouse_genomes_project 17 50953846 50954636 - Frs3os antisense antisense MGP_C57BL6NJ_T0003927.1 MGP_C57BL6NJ_G0003520.1 mouse_genomes_project 17 50954129 50955786 - Frs3os antisense antisense MGP_C57BL6NJ_T0046372.1 MGP_C57BL6NJ_G0023712.1 mouse_genomes_project 17 24504284 24505870 + MGP_C57BL6NJ_P0046372 Bricd5 protein_coding protein_coding MGP_C57BL6NJ_T0046373.1 MGP_C57BL6NJ_G0023712.1 mouse_genomes_project 17 24504367 24505788 + MGP_C57BL6NJ_P0046373 Bricd5 protein_coding protein_coding MGP_C57BL6NJ_T0010449.1 MGP_C57BL6NJ_G0008534.1 mouse_genomes_project 17 98780555 98780690 + Gm44345 miRNA miRNA MGP_C57BL6NJ_T0048249.1 MGP_C57BL6NJ_G0024193.1 mouse_genomes_project 17 48531014 48548462 + MGP_C57BL6NJ_P0048249 Aars2 protein_coding protein_coding MGP_C57BL6NJ_T0047490.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35480413 35491366 + MGP_C57BL6NJ_P0047490 Tap1 protein_coding protein_coding MGP_C57BL6NJ_T0047491.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35480588 35486429 + Tap1 protein_coding retained_intron MGP_C57BL6NJ_T0047492.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35480594 35491366 + Tap1 protein_coding retained_intron MGP_C57BL6NJ_T0047493.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35480662 35491360 + MGP_C57BL6NJ_P0047493 Tap1 protein_coding protein_coding MGP_C57BL6NJ_T0047494.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35484043 35491361 + Tap1 protein_coding retained_intron MGP_C57BL6NJ_T0047495.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35484904 35487709 + MGP_C57BL6NJ_P0047495 Tap1 protein_coding protein_coding MGP_C57BL6NJ_T0047496.1 MGP_C57BL6NJ_G0023968.1 mouse_genomes_project 17 35487206 35490728 + Tap1 protein_coding retained_intron MGP_C57BL6NJ_T0046569.1 MGP_C57BL6NJ_G0023758.1 mouse_genomes_project 17 25467069 25469352 - MGP_C57BL6NJ_P0046569 Tpsab1 protein_coding protein_coding MGP_C57BL6NJ_T0046570.1 MGP_C57BL6NJ_G0023758.1 mouse_genomes_project 17 25467070 25469387 - Tpsab1 protein_coding processed_transcript MGP_C57BL6NJ_T0011702.1 MGP_C57BL6NJ_G0009787.1 mouse_genomes_project 17 91995134 91995406 + Gm27275 misc_RNA misc_RNA MGP_C57BL6NJ_T0049032.1 MGP_C57BL6NJ_G0024436.1 mouse_genomes_project 17 80166419 80326275 + MGP_C57BL6NJ_P0049032 Ttc27 protein_coding protein_coding MGP_C57BL6NJ_T0049033.1 MGP_C57BL6NJ_G0024436.1 mouse_genomes_project 17 80166590 80326277 + MGP_C57BL6NJ_P0049033 Ttc27 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048784.1 MGP_C57BL6NJ_G0024362.1 mouse_genomes_project 17 61196725 61200506 - MGP_C57BL6NJ_P0048784 Cd70 protein_coding protein_coding MGP_C57BL6NJ_T0007091.1 MGP_C57BL6NJ_G0005838.1 mouse_genomes_project 17 29634471 29638242 - lincRNA lincRNA MGP_C57BL6NJ_T0048170.1 MGP_C57BL6NJ_G0024153.1 mouse_genomes_project 17 41995339 41998022 + MGP_C57BL6NJ_P0048170 Esp16 protein_coding protein_coding MGP_C57BL6NJ_T0048155.1 MGP_C57BL6NJ_G0024142.1 mouse_genomes_project 17 40352013 40368449 + MGP_C57BL6NJ_P0048155 Olfr138 protein_coding protein_coding MGP_C57BL6NJ_T0048156.1 MGP_C57BL6NJ_G0024142.1 mouse_genomes_project 17 40352014 40369309 + MGP_C57BL6NJ_P0048156 Olfr138 protein_coding protein_coding MGP_C57BL6NJ_T0048157.1 MGP_C57BL6NJ_G0024142.1 mouse_genomes_project 17 40352024 40368739 + MGP_C57BL6NJ_P0048157 Olfr138 protein_coding protein_coding MGP_C57BL6NJ_T0048158.1 MGP_C57BL6NJ_G0024142.1 mouse_genomes_project 17 40368370 40369309 + MGP_C57BL6NJ_P0048158 Olfr138 protein_coding protein_coding MGP_C57BL6NJ_T0046635.1 MGP_C57BL6NJ_G0023777.1 mouse_genomes_project 17 25973990 25979120 + MGP_C57BL6NJ_P0046635 Wdr24 protein_coding protein_coding MGP_C57BL6NJ_T0046636.1 MGP_C57BL6NJ_G0023777.1 mouse_genomes_project 17 25974012 25979111 + Wdr24 protein_coding retained_intron MGP_C57BL6NJ_T0046637.1 MGP_C57BL6NJ_G0023777.1 mouse_genomes_project 17 25974893 25976035 + Wdr24 protein_coding processed_transcript MGP_C57BL6NJ_T0046638.1 MGP_C57BL6NJ_G0023777.1 mouse_genomes_project 17 25975025 25976708 + Wdr24 protein_coding retained_intron MGP_C57BL6NJ_T0013526.1 MGP_C57BL6NJ_G0011571.1 mouse_genomes_project 17 8835716 8835936 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046116.1 MGP_C57BL6NJ_G0023596.1 mouse_genomes_project 17 16682948 16802583 + MGP_C57BL6NJ_P0046116 Fpr3 protein_coding protein_coding MGP_C57BL6NJ_T0046119.1 MGP_C57BL6NJ_G0023596.1 mouse_genomes_project 17 16801363 16802583 + MGP_C57BL6NJ_P0046119 Fpr3 protein_coding protein_coding MGP_C57BL6NJ_T0046475.1 MGP_C57BL6NJ_G0023739.1 mouse_genomes_project 17 24983425 24984599 + MGP_C57BL6NJ_P0046475 Mrps34 protein_coding protein_coding MGP_C57BL6NJ_T0046476.1 MGP_C57BL6NJ_G0023739.1 mouse_genomes_project 17 24983432 24985812 + MGP_C57BL6NJ_P0046476 Mrps34 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046477.1 MGP_C57BL6NJ_G0023739.1 mouse_genomes_project 17 24983444 24984426 + Mrps34 protein_coding retained_intron MGP_C57BL6NJ_T0047343.1 MGP_C57BL6NJ_G0023942.1 mouse_genomes_project 17 34915068 34938160 - MGP_C57BL6NJ_P0047343 Rab11b protein_coding protein_coding MGP_C57BL6NJ_T0047344.1 MGP_C57BL6NJ_G0023942.1 mouse_genomes_project 17 34921325 34937936 - MGP_C57BL6NJ_P0047344 Rab11b protein_coding protein_coding MGP_C57BL6NJ_T0047345.1 MGP_C57BL6NJ_G0023942.1 mouse_genomes_project 17 34921430 34925769 - MGP_C57BL6NJ_P0047345 Rab11b protein_coding protein_coding MGP_C57BL6NJ_T0047346.1 MGP_C57BL6NJ_G0023942.1 mouse_genomes_project 17 34922012 34937910 - MGP_C57BL6NJ_P0047346 Rab11b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047347.1 MGP_C57BL6NJ_G0023942.1 mouse_genomes_project 17 34923556 34938114 - Rab11b protein_coding processed_transcript MGP_C57BL6NJ_T0047443.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35299184 35302608 - MGP_C57BL6NJ_P0047443 Slc39a7 protein_coding protein_coding MGP_C57BL6NJ_T0047444.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35299186 35302462 - MGP_C57BL6NJ_P0047444 Slc39a7 protein_coding protein_coding MGP_C57BL6NJ_T0047445.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35299190 35302566 - Slc39a7 protein_coding retained_intron MGP_C57BL6NJ_T0047446.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35300763 35301946 - Slc39a7 protein_coding retained_intron MGP_C57BL6NJ_T0047447.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35301091 35302574 - MGP_C57BL6NJ_P0047447 Slc39a7 protein_coding protein_coding MGP_C57BL6NJ_T0047448.1 MGP_C57BL6NJ_G0023960.1 mouse_genomes_project 17 35301510 35302600 - Slc39a7 protein_coding processed_transcript MGP_C57BL6NJ_T0049006.1 MGP_C57BL6NJ_G0024433.1 mouse_genomes_project 17 79817583 79857202 - MGP_C57BL6NJ_P0049006 Nlrc4 protein_coding protein_coding MGP_C57BL6NJ_T0003921.1 MGP_C57BL6NJ_G0003516.1 mouse_genomes_project 17 47710614 47712382 + Runx2os1 antisense antisense MGP_C57BL6NJ_T0010418.1 MGP_C57BL6NJ_G0008503.1 mouse_genomes_project 17 36192995 36193062 - Gm27471 miRNA miRNA MGP_C57BL6NJ_T0007081.1 MGP_C57BL6NJ_G0005829.1 mouse_genomes_project 17 25944030 26135096 + lincRNA lincRNA MGP_C57BL6NJ_T0046147.1 MGP_C57BL6NJ_G0023625.1 mouse_genomes_project 17 20101240 20102191 + MGP_C57BL6NJ_P0046147 Vmn1r230 protein_coding protein_coding MGP_C57BL6NJ_T0047521.1 MGP_C57BL6NJ_G0023978.1 mouse_genomes_project 17 35678092 35686737 + MGP_C57BL6NJ_P0047521 Btnl1 protein_coding protein_coding MGP_C57BL6NJ_T0048681.1 MGP_C57BL6NJ_G0024319.1 mouse_genomes_project 17 60050075 60052342 - MGP_C57BL6NJ_P0048681 Lrg1 protein_coding protein_coding MGP_C57BL6NJ_T0046132.1 MGP_C57BL6NJ_G0023610.1 mouse_genomes_project 17 19229435 19248216 - MGP_C57BL6NJ_P0046132 Vmn2r104 protein_coding protein_coding MGP_C57BL6NJ_T0010403.1 MGP_C57BL6NJ_G0008488.1 mouse_genomes_project 17 27247536 27247594 + Gm27740 miRNA miRNA MGP_C57BL6NJ_T0048682.1 MGP_C57BL6NJ_G0024320.1 mouse_genomes_project 17 60053480 60072484 - MGP_C57BL6NJ_P0048682 Sema6b protein_coding protein_coding MGP_C57BL6NJ_T0048683.1 MGP_C57BL6NJ_G0024320.1 mouse_genomes_project 17 60053480 60064225 - MGP_C57BL6NJ_P0048683 Sema6b protein_coding protein_coding MGP_C57BL6NJ_T0049133.1 MGP_C57BL6NJ_G0024481.1 mouse_genomes_project 17 90059030 90075594 - MGP_C57BL6NJ_P0049133 Haao protein_coding protein_coding MGP_C57BL6NJ_T0010434.1 MGP_C57BL6NJ_G0008519.1 mouse_genomes_project 17 60104029 60104142 - Gm44397 miRNA miRNA MGP_C57BL6NJ_T0049236.1 MGP_C57BL6NJ_G0024519.1 mouse_genomes_project 17 95462917 95517344 - MGP_C57BL6NJ_P0049236 Lhcgr protein_coding protein_coding MGP_C57BL6NJ_T0046291.1 MGP_C57BL6NJ_G0023688.1 mouse_genomes_project 17 23864258 23866043 + MGP_C57BL6NJ_P0046291 Dcpp3 protein_coding protein_coding MGP_C57BL6NJ_T0046587.1 MGP_C57BL6NJ_G0023762.1 mouse_genomes_project 17 25604102 25609107 + MGP_C57BL6NJ_P0046587 Tekt4 protein_coding protein_coding MGP_C57BL6NJ_T0046195.1 MGP_C57BL6NJ_G0023651.1 mouse_genomes_project 17 21955254 21979750 - MGP_C57BL6NJ_P0046195 Zfp944 protein_coding protein_coding MGP_C57BL6NJ_T0045946.1 MGP_C57BL6NJ_G0023549.1 mouse_genomes_project 17 6786867 6807906 + MGP_C57BL6NJ_P0045946 1700010I14Rik protein_coding protein_coding MGP_C57BL6NJ_T0045947.1 MGP_C57BL6NJ_G0023549.1 mouse_genomes_project 17 6786891 6807905 + MGP_C57BL6NJ_P0045947 1700010I14Rik protein_coding protein_coding MGP_C57BL6NJ_T0045948.1 MGP_C57BL6NJ_G0023549.1 mouse_genomes_project 17 6786917 6803824 + 1700010I14Rik protein_coding processed_transcript MGP_C57BL6NJ_T0048186.1 MGP_C57BL6NJ_G0024165.1 mouse_genomes_project 17 43473517 43502315 + MGP_C57BL6NJ_P0048186 Rhag protein_coding protein_coding MGP_C57BL6NJ_T0047119.1 MGP_C57BL6NJ_G0023879.1 mouse_genomes_project 17 30719627 30942374 + MGP_C57BL6NJ_P0047119 Zfand3 protein_coding protein_coding MGP_C57BL6NJ_T0047120.1 MGP_C57BL6NJ_G0023879.1 mouse_genomes_project 17 30719748 30942335 + MGP_C57BL6NJ_P0047120 Zfand3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0045971.1 MGP_C57BL6NJ_G0023557.1 mouse_genomes_project 17 10461867 10552843 - MGP_C57BL6NJ_P0045971 Slc22a3 protein_coding protein_coding MGP_C57BL6NJ_T0046051.1 MGP_C57BL6NJ_G0023579.1 mouse_genomes_project 17 13375316 13390601 - MGP_C57BL6NJ_P0046051 protein_coding protein_coding MGP_C57BL6NJ_T0046052.1 MGP_C57BL6NJ_G0023579.1 mouse_genomes_project 17 13375316 13390601 - MGP_C57BL6NJ_P0046052 protein_coding protein_coding MGP_C57BL6NJ_T0048124.1 MGP_C57BL6NJ_G0024117.1 mouse_genomes_project 17 39597912 39598903 - Olfr112 protein_coding processed_transcript MGP_C57BL6NJ_T0048125.1 MGP_C57BL6NJ_G0024117.1 mouse_genomes_project 17 39597923 39601779 - MGP_C57BL6NJ_P0048125 Olfr112 protein_coding protein_coding MGP_C57BL6NJ_T0048126.1 MGP_C57BL6NJ_G0024117.1 mouse_genomes_project 17 39598094 39601391 - MGP_C57BL6NJ_P0048126 Olfr112 protein_coding protein_coding MGP_C57BL6NJ_T0046168.1 MGP_C57BL6NJ_G0023637.1 mouse_genomes_project 17 20859995 20877500 + MGP_C57BL6NJ_P0046168 Zfp51 protein_coding protein_coding MGP_C57BL6NJ_T0048345.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49337936 49342071 - MGP_C57BL6NJ_P0048345 Polr1c protein_coding protein_coding MGP_C57BL6NJ_T0048346.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49338117 49340590 - MGP_C57BL6NJ_P0048346 Polr1c protein_coding protein_coding MGP_C57BL6NJ_T0048347.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49338540 49341949 - Polr1c protein_coding retained_intron MGP_C57BL6NJ_T0048348.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49338629 49341985 - MGP_C57BL6NJ_P0048348 Polr1c protein_coding protein_coding MGP_C57BL6NJ_T0048349.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49338851 49341985 - MGP_C57BL6NJ_P0048349 Polr1c protein_coding protein_coding MGP_C57BL6NJ_T0048350.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49338949 49341985 - MGP_C57BL6NJ_P0048350 Polr1c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048351.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49339278 49341984 - Polr1c protein_coding retained_intron MGP_C57BL6NJ_T0048352.1 MGP_C57BL6NJ_G0024212.1 mouse_genomes_project 17 49341315 49341985 - Polr1c protein_coding retained_intron MGP_C57BL6NJ_T0048781.1 MGP_C57BL6NJ_G0024359.1 mouse_genomes_project 17 61112844 61122499 - MGP_C57BL6NJ_P0048781 Tubb4a protein_coding protein_coding MGP_C57BL6NJ_T0048988.1 MGP_C57BL6NJ_G0024423.1 mouse_genomes_project 17 78393876 78453147 + MGP_C57BL6NJ_P0048988 Lclat1 protein_coding protein_coding MGP_C57BL6NJ_T0048989.1 MGP_C57BL6NJ_G0024423.1 mouse_genomes_project 17 78393879 78486951 + MGP_C57BL6NJ_P0048989 Lclat1 protein_coding protein_coding MGP_C57BL6NJ_T0048990.1 MGP_C57BL6NJ_G0024423.1 mouse_genomes_project 17 78393885 78533143 + MGP_C57BL6NJ_P0048990 Lclat1 protein_coding protein_coding MGP_C57BL6NJ_T0048991.1 MGP_C57BL6NJ_G0024423.1 mouse_genomes_project 17 78454144 78529683 + Lclat1 protein_coding processed_transcript MGP_C57BL6NJ_T0048992.1 MGP_C57BL6NJ_G0024423.1 mouse_genomes_project 17 78494318 78530146 + Lclat1 protein_coding processed_transcript MGP_C57BL6NJ_T0098841.1 MGP_C57BL6NJ_G0036905.1 mouse_genomes_project 17 39651215 39652180 - pseudogene pseudogene MGP_C57BL6NJ_T0048785.1 MGP_C57BL6NJ_G0024363.1 mouse_genomes_project 17 61248427 61253125 - MGP_C57BL6NJ_P0048785 Tnfsf14 protein_coding protein_coding MGP_C57BL6NJ_T0047379.1 MGP_C57BL6NJ_G0023949.1 mouse_genomes_project 17 35122039 35131950 + MGP_C57BL6NJ_P0047379 Tapbp protein_coding protein_coding MGP_C57BL6NJ_T0047380.1 MGP_C57BL6NJ_G0023949.1 mouse_genomes_project 17 35122219 35123083 + Tapbp protein_coding retained_intron MGP_C57BL6NJ_T0047381.1 MGP_C57BL6NJ_G0023949.1 mouse_genomes_project 17 35123235 35128859 + Tapbp protein_coding processed_transcript MGP_C57BL6NJ_T0047382.1 MGP_C57BL6NJ_G0023949.1 mouse_genomes_project 17 35128779 35130938 + Tapbp protein_coding retained_intron MGP_C57BL6NJ_T0003924.1 MGP_C57BL6NJ_G0003519.1 mouse_genomes_project 17 50941454 50944930 + Tomm6os antisense antisense MGP_C57BL6NJ_T0013562.1 MGP_C57BL6NJ_G0011607.1 mouse_genomes_project 17 38043175 38043215 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045854.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3256058 3360907 + MGP_C57BL6NJ_P0045854 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045855.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3256058 3355145 + MGP_C57BL6NJ_P0045855 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045856.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3256142 3361742 + MGP_C57BL6NJ_P0045856 Synj2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045857.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3256167 3360907 + MGP_C57BL6NJ_P0045857 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045858.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3295838 3348642 + MGP_C57BL6NJ_P0045858 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045859.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3295893 3366642 + MGP_C57BL6NJ_P0045859 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045860.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3295992 3360907 + MGP_C57BL6NJ_P0045860 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045861.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3308236 3361693 + MGP_C57BL6NJ_P0045861 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045862.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3310313 3366642 + MGP_C57BL6NJ_P0045862 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045863.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3316656 3360680 + MGP_C57BL6NJ_P0045863 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045864.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3317486 3342975 + MGP_C57BL6NJ_P0045864 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045865.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3329618 3355281 + MGP_C57BL6NJ_P0045865 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045866.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3329635 3360758 + MGP_C57BL6NJ_P0045866 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045867.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3329650 3332529 + Synj2 protein_coding processed_transcript MGP_C57BL6NJ_T0045868.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3336086 3360725 + MGP_C57BL6NJ_P0045868 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0045869.1 MGP_C57BL6NJ_G0023526.1 mouse_genomes_project 17 3347427 3359814 + MGP_C57BL6NJ_P0045869 Synj2 protein_coding protein_coding MGP_C57BL6NJ_T0010438.1 MGP_C57BL6NJ_G0008523.1 mouse_genomes_project 17 67928287 67928371 + Gm24813 miRNA miRNA MGP_C57BL6NJ_T0047814.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36740527 36745635 + Atp6v1g2 protein_coding retained_intron MGP_C57BL6NJ_T0047815.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36741955 36744673 + MGP_C57BL6NJ_P0047815 Atp6v1g2 protein_coding protein_coding MGP_C57BL6NJ_T0047816.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36742745 36744772 + MGP_C57BL6NJ_P0047816 Atp6v1g2 protein_coding protein_coding MGP_C57BL6NJ_T0047817.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36742759 36744941 + Atp6v1g2 protein_coding retained_intron MGP_C57BL6NJ_T0047818.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36743429 36745635 + MGP_C57BL6NJ_P0047818 Atp6v1g2 protein_coding protein_coding MGP_C57BL6NJ_T0047819.1 MGP_C57BL6NJ_G0024037.1 mouse_genomes_project 17 36743523 36744835 + Atp6v1g2 protein_coding retained_intron MGP_C57BL6NJ_T0047197.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32948076 32975805 + MGP_C57BL6NJ_P0047197 Rrp1b protein_coding protein_coding MGP_C57BL6NJ_T0047198.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32948379 32960862 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047199.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32948405 32960855 + MGP_C57BL6NJ_P0047199 Rrp1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047200.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32961224 32975796 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047201.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32961746 32964740 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047202.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32962958 32964619 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047203.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32964743 32969542 + MGP_C57BL6NJ_P0047203 Rrp1b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047204.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32965211 32969555 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047205.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32968858 32969971 + Rrp1b protein_coding processed_transcript MGP_C57BL6NJ_T0047206.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32971228 32973513 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0047207.1 MGP_C57BL6NJ_G0023902.1 mouse_genomes_project 17 32972107 32973606 + Rrp1b protein_coding retained_intron MGP_C57BL6NJ_T0101388.1 MGP_C57BL6NJ_G0039434.1 mouse_genomes_project 17 79363979 79364122 + Gm24475 snoRNA snoRNA MGP_C57BL6NJ_T0007136.1 MGP_C57BL6NJ_G0005871.1 mouse_genomes_project 17 58157454 58176437 - 1700025K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0102195.1 MGP_C57BL6NJ_G0040208.1 mouse_genomes_project 17 28547046 28549996 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102196.1 MGP_C57BL6NJ_G0040208.1 mouse_genomes_project 17 28548721 28549663 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0047134.1 MGP_C57BL6NJ_G0023887.1 mouse_genomes_project 17 31948557 31951787 - MGP_C57BL6NJ_P0047134 Tff2 protein_coding protein_coding MGP_C57BL6NJ_T0102893.1 MGP_C57BL6NJ_G0040687.1 mouse_genomes_project 17 3626323 3653576 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048607.1 MGP_C57BL6NJ_G0024288.1 mouse_genomes_project 17 54211694 54213397 + MGP_C57BL6NJ_P0048607 protein_coding protein_coding MGP_C57BL6NJ_T0048628.1 MGP_C57BL6NJ_G0024294.1 mouse_genomes_project 17 57195508 57225858 - MGP_C57BL6NJ_P0048628 Pp2d1 protein_coding protein_coding MGP_C57BL6NJ_T0010428.1 MGP_C57BL6NJ_G0008513.1 mouse_genomes_project 17 37648825 37648910 - Mir877 miRNA miRNA MGP_C57BL6NJ_T0048900.1 MGP_C57BL6NJ_G0024403.1 mouse_genomes_project 17 74367759 74422520 + MGP_C57BL6NJ_P0048900 Akain1 protein_coding protein_coding MGP_C57BL6NJ_T0046037.1 MGP_C57BL6NJ_G0023574.1 mouse_genomes_project 17 13081375 13109954 - MGP_C57BL6NJ_P0046037 Thbs2 protein_coding protein_coding MGP_C57BL6NJ_T0046264.1 MGP_C57BL6NJ_G0023679.1 mouse_genomes_project 17 23686226 23695380 - MGP_C57BL6NJ_P0046264 Flywch2 protein_coding protein_coding MGP_C57BL6NJ_T0046265.1 MGP_C57BL6NJ_G0023679.1 mouse_genomes_project 17 23686269 23689102 - MGP_C57BL6NJ_P0046265 Flywch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046266.1 MGP_C57BL6NJ_G0023679.1 mouse_genomes_project 17 23686302 23695351 - MGP_C57BL6NJ_P0046266 Flywch2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0098843.1 MGP_C57BL6NJ_G0036907.1 mouse_genomes_project 17 86705037 86705412 + pseudogene pseudogene MGP_C57BL6NJ_T0048150.1 MGP_C57BL6NJ_G0024138.1 mouse_genomes_project 17 40232702 40233644 - MGP_C57BL6NJ_P0048150 Olfr132 protein_coding protein_coding MGP_C57BL6NJ_T0047767.1 MGP_C57BL6NJ_G0024025.1 mouse_genomes_project 17 36603499 36606969 + MGP_C57BL6NJ_P0047767 protein_coding protein_coding MGP_C57BL6NJ_T0047768.1 MGP_C57BL6NJ_G0024025.1 mouse_genomes_project 17 36603526 36607338 + MGP_C57BL6NJ_P0047768 protein_coding protein_coding MGP_C57BL6NJ_T0047769.1 MGP_C57BL6NJ_G0024025.1 mouse_genomes_project 17 36603527 36608493 + MGP_C57BL6NJ_P0047769 protein_coding protein_coding MGP_C57BL6NJ_T0047770.1 MGP_C57BL6NJ_G0024025.1 mouse_genomes_project 17 36603705 36604388 + protein_coding processed_transcript MGP_C57BL6NJ_T0047771.1 MGP_C57BL6NJ_G0024025.1 mouse_genomes_project 17 36604996 36608485 + MGP_C57BL6NJ_P0047771 protein_coding protein_coding MGP_C57BL6NJ_T0098839.1 MGP_C57BL6NJ_G0036903.1 mouse_genomes_project 17 34567773 34569143 + pseudogene pseudogene MGP_C57BL6NJ_T0048760.1 MGP_C57BL6NJ_G0024350.1 mouse_genomes_project 17 60998298 61004406 + MGP_C57BL6NJ_P0048760 Clpp protein_coding protein_coding MGP_C57BL6NJ_T0048549.1 MGP_C57BL6NJ_G0024272.1 mouse_genomes_project 17 51680553 51700081 + MGP_C57BL6NJ_P0048549 Treml2 protein_coding protein_coding MGP_C57BL6NJ_T0102909.1 MGP_C57BL6NJ_G0040703.1 mouse_genomes_project 17 19669254 19669858 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045969.1 MGP_C57BL6NJ_G0023555.1 mouse_genomes_project 17 10264335 10352177 - MGP_C57BL6NJ_P0045969 Map3k4 protein_coding protein_coding MGP_C57BL6NJ_T0010387.1 MGP_C57BL6NJ_G0008472.1 mouse_genomes_project 17 10932911 10933027 - Gm24085 miRNA miRNA MGP_C57BL6NJ_T0046603.1 MGP_C57BL6NJ_G0023766.1 mouse_genomes_project 17 25858868 25861104 + MGP_C57BL6NJ_P0046603 Gng13 protein_coding protein_coding MGP_C57BL6NJ_T0046604.1 MGP_C57BL6NJ_G0023766.1 mouse_genomes_project 17 25859225 25860785 + MGP_C57BL6NJ_P0046604 Gng13 protein_coding protein_coding MGP_C57BL6NJ_T0046410.1 MGP_C57BL6NJ_G0023718.1 mouse_genomes_project 17 24681206 24687363 + MGP_C57BL6NJ_P0046410 Nthl1 protein_coding protein_coding MGP_C57BL6NJ_T0003880.1 MGP_C57BL6NJ_G0003485.1 mouse_genomes_project 17 26860000 26864743 - Gm17218 antisense antisense MGP_C57BL6NJ_T0100070.1 MGP_C57BL6NJ_G0038116.1 mouse_genomes_project 17 24369443 24369550 - Gm25618 snRNA snRNA MGP_C57BL6NJ_T0046305.1 MGP_C57BL6NJ_G0023693.1 mouse_genomes_project 17 23991679 23992003 + MGP_C57BL6NJ_P0046305 Gm5225 protein_coding protein_coding MGP_C57BL6NJ_T0046204.1 MGP_C57BL6NJ_G0023654.1 mouse_genomes_project 17 22280083 22300607 + MGP_C57BL6NJ_P0046204 Vmn2r112 protein_coding protein_coding MGP_C57BL6NJ_T0001111.1 MGP_C57BL6NJ_G0001018.1 mouse_genomes_project 17 9227000 9229844 - TEC TEC MGP_C57BL6NJ_T0046251.1 MGP_C57BL6NJ_G0023672.1 mouse_genomes_project 17 23576253 23579335 + MGP_C57BL6NJ_P0046251 Cldn6 protein_coding protein_coding MGP_C57BL6NJ_T0048287.1 MGP_C57BL6NJ_G0024200.1 mouse_genomes_project 17 48634335 48635471 - MGP_C57BL6NJ_P0048287 Gm7325 protein_coding protein_coding MGP_C57BL6NJ_T0048288.1 MGP_C57BL6NJ_G0024200.1 mouse_genomes_project 17 48634335 48635436 - MGP_C57BL6NJ_P0048288 Gm7325 protein_coding protein_coding MGP_C57BL6NJ_T0048289.1 MGP_C57BL6NJ_G0024200.1 mouse_genomes_project 17 48634335 48635284 - MGP_C57BL6NJ_P0048289 Gm7325 protein_coding protein_coding MGP_C57BL6NJ_T0045978.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10902422 10935876 - MGP_C57BL6NJ_P0045978 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045979.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10902458 10921079 - MGP_C57BL6NJ_P0045979 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045980.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10902458 10920959 - MGP_C57BL6NJ_P0045980 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045981.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10902458 10921079 - MGP_C57BL6NJ_P0045981 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045982.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10902458 10911549 - MGP_C57BL6NJ_P0045982 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045983.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10903547 10918526 - MGP_C57BL6NJ_P0045983 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045984.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10903650 10918512 - MGP_C57BL6NJ_P0045984 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045985.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10903661 10918526 - MGP_C57BL6NJ_P0045985 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0045986.1 MGP_C57BL6NJ_G0023561.1 mouse_genomes_project 17 10903804 10922828 - MGP_C57BL6NJ_P0045986 Mas1 protein_coding protein_coding MGP_C57BL6NJ_T0011695.1 MGP_C57BL6NJ_G0009780.1 mouse_genomes_project 17 74547138 74547377 - Gm22967 misc_RNA misc_RNA MGP_C57BL6NJ_T0007147.1 MGP_C57BL6NJ_G0005878.1 mouse_genomes_project 17 75948323 75949900 - Gm26510 lincRNA lincRNA MGP_C57BL6NJ_T0007148.1 MGP_C57BL6NJ_G0005878.1 mouse_genomes_project 17 75948326 76001983 - Gm26510 lincRNA lincRNA MGP_C57BL6NJ_T0046639.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979256 25982230 + MGP_C57BL6NJ_P0046639 Jmjd8 protein_coding protein_coding MGP_C57BL6NJ_T0046640.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979432 25982232 + MGP_C57BL6NJ_P0046640 Jmjd8 protein_coding protein_coding MGP_C57BL6NJ_T0046641.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979453 25980540 + Jmjd8 protein_coding retained_intron MGP_C57BL6NJ_T0046642.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979460 25981015 + MGP_C57BL6NJ_P0046642 Jmjd8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046643.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979509 25981023 + MGP_C57BL6NJ_P0046643 Jmjd8 protein_coding protein_coding MGP_C57BL6NJ_T0046644.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979510 25980751 + Jmjd8 protein_coding retained_intron MGP_C57BL6NJ_T0046645.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25979686 25980916 + Jmjd8 protein_coding retained_intron MGP_C57BL6NJ_T0046646.1 MGP_C57BL6NJ_G0023778.1 mouse_genomes_project 17 25980228 25981111 + Jmjd8 protein_coding retained_intron MGP_C57BL6NJ_T0048194.1 MGP_C57BL6NJ_G0024172.1 mouse_genomes_project 17 45393602 45441927 - MGP_C57BL6NJ_P0048194 Adgrf4 protein_coding protein_coding MGP_C57BL6NJ_T0048195.1 MGP_C57BL6NJ_G0024172.1 mouse_genomes_project 17 45393605 45441927 - MGP_C57BL6NJ_P0048195 Adgrf4 protein_coding protein_coding MGP_C57BL6NJ_T0048196.1 MGP_C57BL6NJ_G0024172.1 mouse_genomes_project 17 45393802 45441905 - MGP_C57BL6NJ_P0048196 Adgrf4 protein_coding protein_coding MGP_C57BL6NJ_T0048197.1 MGP_C57BL6NJ_G0024172.1 mouse_genomes_project 17 45415219 45441916 - MGP_C57BL6NJ_P0048197 Adgrf4 protein_coding protein_coding MGP_C57BL6NJ_T0003909.1 MGP_C57BL6NJ_G0003507.1 mouse_genomes_project 17 37358933 37363340 + Gm4577 antisense antisense MGP_C57BL6NJ_T0045933.1 MGP_C57BL6NJ_G0023546.1 mouse_genomes_project 17 6199258 6207326 + MGP_C57BL6NJ_P0045933 T protein_coding protein_coding MGP_C57BL6NJ_T0045934.1 MGP_C57BL6NJ_G0023546.1 mouse_genomes_project 17 6199760 6201822 + MGP_C57BL6NJ_P0045934 T protein_coding protein_coding MGP_C57BL6NJ_T0045935.1 MGP_C57BL6NJ_G0023546.1 mouse_genomes_project 17 6200246 6206572 + MGP_C57BL6NJ_P0045935 T protein_coding protein_coding MGP_C57BL6NJ_T0046999.1 MGP_C57BL6NJ_G0023854.1 mouse_genomes_project 17 29355189 29366563 + MGP_C57BL6NJ_P0046999 Mapk13 protein_coding protein_coding MGP_C57BL6NJ_T0047000.1 MGP_C57BL6NJ_G0023854.1 mouse_genomes_project 17 29355218 29366084 + Mapk13 protein_coding retained_intron MGP_C57BL6NJ_T0047001.1 MGP_C57BL6NJ_G0023854.1 mouse_genomes_project 17 29355231 29366411 + MGP_C57BL6NJ_P0047001 Mapk13 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047002.1 MGP_C57BL6NJ_G0023854.1 mouse_genomes_project 17 29355254 29365427 + Mapk13 protein_coding retained_intron MGP_C57BL6NJ_T0013589.1 MGP_C57BL6NJ_G0011634.1 mouse_genomes_project 17 51222887 51223244 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013605.1 MGP_C57BL6NJ_G0011650.1 mouse_genomes_project 17 67926132 67928027 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013578.1 MGP_C57BL6NJ_G0011623.1 mouse_genomes_project 17 40018136 40028069 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013540.1 MGP_C57BL6NJ_G0011585.1 mouse_genomes_project 17 22418727 22419145 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048520.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51083892 51110954 - MGP_C57BL6NJ_P0048520 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048521.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51083892 51112404 - MGP_C57BL6NJ_P0048521 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048522.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51083900 51111004 - MGP_C57BL6NJ_P0048522 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048523.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51086836 51110971 - Mdfi protein_coding processed_transcript MGP_C57BL6NJ_T0048524.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51086954 51110882 - MGP_C57BL6NJ_P0048524 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048525.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51090654 51110974 - Mdfi protein_coding retained_intron MGP_C57BL6NJ_T0048526.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51091693 51110985 - MGP_C57BL6NJ_P0048526 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048527.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51091782 51110958 - MGP_C57BL6NJ_P0048527 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048528.1 MGP_C57BL6NJ_G0024264.1 mouse_genomes_project 17 51098317 51110943 - MGP_C57BL6NJ_P0048528 Mdfi protein_coding protein_coding MGP_C57BL6NJ_T0048584.1 MGP_C57BL6NJ_G0024281.1 mouse_genomes_project 17 52371067 52550645 + MGP_C57BL6NJ_P0048584 Lrfn2 protein_coding protein_coding MGP_C57BL6NJ_T0003899.1 MGP_C57BL6NJ_G0003498.1 mouse_genomes_project 17 35121986 35122865 - Gm19412 antisense antisense MGP_C57BL6NJ_T0003900.1 MGP_C57BL6NJ_G0003498.1 mouse_genomes_project 17 35122281 35122997 - Gm19412 antisense antisense MGP_C57BL6NJ_T0049238.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96829721 97947044 - MGP_C57BL6NJ_P0049238 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049239.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96829734 97953278 - MGP_C57BL6NJ_P0049239 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049240.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96831518 96888622 - MGP_C57BL6NJ_P0049240 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049241.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96831520 97947052 - MGP_C57BL6NJ_P0049241 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049242.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96831902 97279358 - MGP_C57BL6NJ_P0049242 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049243.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832372 96888626 - MGP_C57BL6NJ_P0049243 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049244.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832399 97279372 - MGP_C57BL6NJ_P0049244 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049245.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832771 97946863 - MGP_C57BL6NJ_P0049245 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049246.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832955 96888366 - Nrxn1 protein_coding processed_transcript MGP_C57BL6NJ_T0049247.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832982 97946863 - MGP_C57BL6NJ_P0049247 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049248.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832998 97279436 - MGP_C57BL6NJ_P0049248 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049249.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96832998 97952940 - MGP_C57BL6NJ_P0049249 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049250.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96833426 97013227 - MGP_C57BL6NJ_P0049250 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049251.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 96964629 97165390 - Nrxn1 protein_coding processed_transcript MGP_C57BL6NJ_T0049252.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97013092 97953010 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049253.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97013092 97278308 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049254.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97179466 97414453 - MGP_C57BL6NJ_P0049254 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049255.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97179707 97414602 - MGP_C57BL6NJ_P0049255 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049256.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97277262 97280059 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049257.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97358424 97946620 - Nrxn1 protein_coding processed_transcript MGP_C57BL6NJ_T0049258.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97382750 97535296 - MGP_C57BL6NJ_P0049258 Nrxn1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049259.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97415675 97458425 - MGP_C57BL6NJ_P0049259 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049260.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97415953 97531397 - MGP_C57BL6NJ_P0049260 Nrxn1 protein_coding protein_coding MGP_C57BL6NJ_T0049261.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97442857 97458228 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049262.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97530553 97952978 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049263.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97533798 97952998 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0049264.1 MGP_C57BL6NJ_G0024521.1 mouse_genomes_project 17 97943594 97952960 - Nrxn1 protein_coding retained_intron MGP_C57BL6NJ_T0001131.1 MGP_C57BL6NJ_G0001037.1 mouse_genomes_project 17 90252290 90256355 - TEC TEC MGP_C57BL6NJ_T0046478.1 MGP_C57BL6NJ_G0023740.1 mouse_genomes_project 17 24984809 24985832 + MGP_C57BL6NJ_P0046478 Nme3 protein_coding protein_coding MGP_C57BL6NJ_T0046479.1 MGP_C57BL6NJ_G0023740.1 mouse_genomes_project 17 24984814 24985645 + Nme3 protein_coding processed_transcript MGP_C57BL6NJ_T0046480.1 MGP_C57BL6NJ_G0023740.1 mouse_genomes_project 17 24984830 24985554 + Nme3 protein_coding retained_intron MGP_C57BL6NJ_T0046481.1 MGP_C57BL6NJ_G0023740.1 mouse_genomes_project 17 24984832 24985794 + Nme3 protein_coding retained_intron MGP_C57BL6NJ_T0046482.1 MGP_C57BL6NJ_G0023740.1 mouse_genomes_project 17 24985060 24985657 + Nme3 protein_coding retained_intron MGP_C57BL6NJ_T0047416.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35188776 35201986 + MGP_C57BL6NJ_P0047416 Vps52 protein_coding protein_coding MGP_C57BL6NJ_T0047417.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35188879 35200975 + MGP_C57BL6NJ_P0047417 Vps52 protein_coding protein_coding MGP_C57BL6NJ_T0047418.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35191021 35193440 + Vps52 protein_coding retained_intron MGP_C57BL6NJ_T0047419.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35191973 35193469 + Vps52 protein_coding retained_intron MGP_C57BL6NJ_T0047420.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35194075 35198254 + Vps52 protein_coding retained_intron MGP_C57BL6NJ_T0047421.1 MGP_C57BL6NJ_G0023955.1 mouse_genomes_project 17 35197821 35201271 + Vps52 protein_coding retained_intron MGP_C57BL6NJ_T0045931.1 MGP_C57BL6NJ_G0023545.1 mouse_genomes_project 17 6092552 6096259 + MGP_C57BL6NJ_P0045931 Prr18 protein_coding protein_coding MGP_C57BL6NJ_T0045932.1 MGP_C57BL6NJ_G0023545.1 mouse_genomes_project 17 6092885 6096259 + MGP_C57BL6NJ_P0045932 Prr18 protein_coding protein_coding MGP_C57BL6NJ_T0048038.1 MGP_C57BL6NJ_G0024084.1 mouse_genomes_project 17 38761125 38764556 + MGP_C57BL6NJ_P0048038 H2-M10.6 protein_coding protein_coding MGP_C57BL6NJ_T0046577.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25499096 25565301 - MGP_C57BL6NJ_P0046577 Cacna1h protein_coding protein_coding MGP_C57BL6NJ_T0046578.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25499097 25565173 - MGP_C57BL6NJ_P0046578 Cacna1h protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046579.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25499099 25565301 - MGP_C57BL6NJ_P0046579 Cacna1h protein_coding protein_coding MGP_C57BL6NJ_T0046580.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25499106 25565301 - MGP_C57BL6NJ_P0046580 Cacna1h protein_coding protein_coding MGP_C57BL6NJ_T0046581.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25501695 25505328 - MGP_C57BL6NJ_P0046581 Cacna1h protein_coding protein_coding MGP_C57BL6NJ_T0046582.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25502007 25504956 - MGP_C57BL6NJ_P0046582 Cacna1h protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046583.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25512916 25514149 - Cacna1h protein_coding retained_intron MGP_C57BL6NJ_T0046584.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25516922 25565286 - Cacna1h protein_coding retained_intron MGP_C57BL6NJ_T0046585.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25522301 25564796 - MGP_C57BL6NJ_P0046585 Cacna1h protein_coding protein_coding MGP_C57BL6NJ_T0046586.1 MGP_C57BL6NJ_G0023761.1 mouse_genomes_project 17 25563356 25565301 - Cacna1h protein_coding retained_intron MGP_C57BL6NJ_T0099044.1 MGP_C57BL6NJ_G0037108.1 mouse_genomes_project 17 76663571 76663679 - Gm23115 rRNA rRNA MGP_C57BL6NJ_T0046852.1 MGP_C57BL6NJ_G0023824.1 mouse_genomes_project 17 27557811 27572659 - MGP_C57BL6NJ_P0046852 Lemd2 protein_coding protein_coding MGP_C57BL6NJ_T0045913.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6029499 6043500 + MGP_C57BL6NJ_P0045913 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0045914.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6030397 6044276 + MGP_C57BL6NJ_P0045914 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0045915.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6030431 6040246 + Mpc1 protein_coding retained_intron MGP_C57BL6NJ_T0045916.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6030431 6044272 + MGP_C57BL6NJ_P0045916 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0045917.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6030487 6043886 + MGP_C57BL6NJ_P0045917 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0045918.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6031089 6044109 + MGP_C57BL6NJ_P0045918 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0045919.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6042722 6043765 + Mpc1 protein_coding retained_intron MGP_C57BL6NJ_T0045920.1 MGP_C57BL6NJ_G0023543.1 mouse_genomes_project 17 6042984 6044064 + MGP_C57BL6NJ_P0045920 Mpc1 protein_coding protein_coding MGP_C57BL6NJ_T0100089.1 MGP_C57BL6NJ_G0038135.1 mouse_genomes_project 17 54438244 54438361 - Gm25177 snRNA snRNA MGP_C57BL6NJ_T0003942.1 MGP_C57BL6NJ_G0003533.1 mouse_genomes_project 17 93833608 93835897 - Gm15978 antisense antisense MGP_C57BL6NJ_T0046124.1 MGP_C57BL6NJ_G0023602.1 mouse_genomes_project 17 17113801 17155403 - MGP_C57BL6NJ_P0046124 Vmn2r94 protein_coding protein_coding MGP_C57BL6NJ_T0018022.1 MGP_C57BL6NJ_G0015735.1 mouse_genomes_project 17 26084659 26102353 + Gm16278 processed_transcript processed_transcript MGP_C57BL6NJ_T0047247.1 MGP_C57BL6NJ_G0023911.1 mouse_genomes_project 17 33397805 33421837 + MGP_C57BL6NJ_P0047247 Cyp4f39 protein_coding protein_coding MGP_C57BL6NJ_T0048490.1 MGP_C57BL6NJ_G0024259.1 mouse_genomes_project 17 50940583 50948303 - MGP_C57BL6NJ_P0048490 Prickle4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047144.1 MGP_C57BL6NJ_G0023892.1 mouse_genomes_project 17 32116235 32181578 + MGP_C57BL6NJ_P0047144 Slc37a1 protein_coding protein_coding MGP_C57BL6NJ_T0047145.1 MGP_C57BL6NJ_G0023892.1 mouse_genomes_project 17 32116971 32181578 + MGP_C57BL6NJ_P0047145 Slc37a1 protein_coding protein_coding MGP_C57BL6NJ_T0048127.1 MGP_C57BL6NJ_G0024118.1 mouse_genomes_project 17 39612393 39614648 - MGP_C57BL6NJ_P0048127 Olfr113 protein_coding protein_coding MGP_C57BL6NJ_T0046733.1 MGP_C57BL6NJ_G0023797.1 mouse_genomes_project 17 26329339 26332516 + MGP_C57BL6NJ_P0046733 Mrpl28 protein_coding protein_coding MGP_C57BL6NJ_T0046734.1 MGP_C57BL6NJ_G0023797.1 mouse_genomes_project 17 26329542 26330754 + Mrpl28 protein_coding retained_intron MGP_C57BL6NJ_T0047365.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35022462 35039128 + MGP_C57BL6NJ_P0047365 Ndufa7 protein_coding protein_coding MGP_C57BL6NJ_T0047366.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35022465 35023995 + Ndufa7 protein_coding retained_intron MGP_C57BL6NJ_T0047367.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35022475 35039121 + MGP_C57BL6NJ_P0047367 Ndufa7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047368.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35022516 35023718 + Ndufa7 protein_coding retained_intron MGP_C57BL6NJ_T0047369.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35022916 35038994 + Ndufa7 protein_coding processed_transcript MGP_C57BL6NJ_T0047370.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35023492 35038998 + Ndufa7 protein_coding processed_transcript MGP_C57BL6NJ_T0047371.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35026995 35039121 + Ndufa7 protein_coding processed_transcript MGP_C57BL6NJ_T0047372.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35027230 35039106 + Ndufa7 protein_coding processed_transcript MGP_C57BL6NJ_T0047373.1 MGP_C57BL6NJ_G0023946.1 mouse_genomes_project 17 35027264 35039126 + Ndufa7 protein_coding retained_intron MGP_C57BL6NJ_T0047899.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489296 37498848 + MGP_C57BL6NJ_P0047899 Flot1 protein_coding protein_coding MGP_C57BL6NJ_T0047900.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489413 37498667 + MGP_C57BL6NJ_P0047900 Flot1 protein_coding protein_coding MGP_C57BL6NJ_T0047901.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489448 37496081 + MGP_C57BL6NJ_P0047901 Flot1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047902.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489492 37490465 + Flot1 protein_coding retained_intron MGP_C57BL6NJ_T0047903.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489592 37491792 + MGP_C57BL6NJ_P0047903 Flot1 protein_coding protein_coding MGP_C57BL6NJ_T0047904.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489615 37491804 + MGP_C57BL6NJ_P0047904 Flot1 protein_coding protein_coding MGP_C57BL6NJ_T0047905.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37489659 37491791 + MGP_C57BL6NJ_P0047905 Flot1 protein_coding protein_coding MGP_C57BL6NJ_T0047906.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37490062 37490995 + Flot1 protein_coding retained_intron MGP_C57BL6NJ_T0047907.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37496142 37498683 + Flot1 protein_coding retained_intron MGP_C57BL6NJ_T0047908.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37496555 37498697 + Flot1 protein_coding retained_intron MGP_C57BL6NJ_T0047909.1 MGP_C57BL6NJ_G0024055.1 mouse_genomes_project 17 37496694 37497527 + Flot1 protein_coding retained_intron MGP_C57BL6NJ_T0046816.1 MGP_C57BL6NJ_G0023814.1 mouse_genomes_project 17 27231535 27262906 + MGP_C57BL6NJ_P0046816 Kifc5b protein_coding protein_coding MGP_C57BL6NJ_T0013536.1 MGP_C57BL6NJ_G0011581.1 mouse_genomes_project 17 14040919 14042313 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013525.1 MGP_C57BL6NJ_G0011570.1 mouse_genomes_project 17 7147840 7148827 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046115.1 MGP_C57BL6NJ_G0023595.1 mouse_genomes_project 17 16682920 16692946 + protein_coding processed_transcript MGP_C57BL6NJ_T0046117.1 MGP_C57BL6NJ_G0023595.1 mouse_genomes_project 17 16682984 16692847 + MGP_C57BL6NJ_P0046117 protein_coding protein_coding MGP_C57BL6NJ_T0046306.1 MGP_C57BL6NJ_G0023694.1 mouse_genomes_project 17 24013126 24032140 + MGP_C57BL6NJ_P0046306 Prss27 protein_coding protein_coding MGP_C57BL6NJ_T0048248.1 MGP_C57BL6NJ_G0024192.1 mouse_genomes_project 17 48457064 48496533 - MGP_C57BL6NJ_P0048248 Spats1 protein_coding protein_coding MGP_C57BL6NJ_T0018052.1 MGP_C57BL6NJ_G0015747.1 mouse_genomes_project 17 76730166 76772285 - Trmt61b processed_transcript processed_transcript MGP_C57BL6NJ_T0018053.1 MGP_C57BL6NJ_G0015747.1 mouse_genomes_project 17 76730201 76772276 - Trmt61b processed_transcript processed_transcript MGP_C57BL6NJ_T0018054.1 MGP_C57BL6NJ_G0015747.1 mouse_genomes_project 17 76761674 76771783 - Trmt61b processed_transcript processed_transcript MGP_C57BL6NJ_T0013604.1 MGP_C57BL6NJ_G0011649.1 mouse_genomes_project 17 65727353 65728395 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047941.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37576285 37588799 - MGP_C57BL6NJ_P0047941 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047942.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37576299 37588770 - MGP_C57BL6NJ_P0047942 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047943.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37576302 37588781 - MGP_C57BL6NJ_P0047943 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047944.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37576305 37577273 - Atat1 protein_coding retained_intron MGP_C57BL6NJ_T0047945.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37576572 37587685 - MGP_C57BL6NJ_P0047945 Atat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047946.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37578507 37588769 - MGP_C57BL6NJ_P0047946 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047947.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37578542 37588769 - MGP_C57BL6NJ_P0047947 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047948.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37579183 37583051 - MGP_C57BL6NJ_P0047948 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047949.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37580674 37588159 - Atat1 protein_coding retained_intron MGP_C57BL6NJ_T0047950.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37580691 37588297 - Atat1 protein_coding processed_transcript MGP_C57BL6NJ_T0047951.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37580695 37587763 - Atat1 protein_coding retained_intron MGP_C57BL6NJ_T0047952.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37580728 37588350 - MGP_C57BL6NJ_P0047952 Atat1 protein_coding protein_coding MGP_C57BL6NJ_T0047953.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37582054 37588463 - Atat1 protein_coding retained_intron MGP_C57BL6NJ_T0047954.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37586688 37588769 - Atat1 protein_coding processed_transcript MGP_C57BL6NJ_T0047955.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37587307 37588755 - MGP_C57BL6NJ_P0047955 Atat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047956.1 MGP_C57BL6NJ_G0024062.1 mouse_genomes_project 17 37587654 37588733 - Atat1 protein_coding retained_intron MGP_C57BL6NJ_T0047513.1 MGP_C57BL6NJ_G0023974.1 mouse_genomes_project 17 35575839 35580923 - MGP_C57BL6NJ_P0047513 H2-Aa protein_coding protein_coding MGP_C57BL6NJ_T0047514.1 MGP_C57BL6NJ_G0023974.1 mouse_genomes_project 17 35575860 35580887 - MGP_C57BL6NJ_P0047514 H2-Aa protein_coding protein_coding MGP_C57BL6NJ_T0047515.1 MGP_C57BL6NJ_G0023974.1 mouse_genomes_project 17 35576867 35580873 - H2-Aa protein_coding retained_intron MGP_C57BL6NJ_T0047516.1 MGP_C57BL6NJ_G0023974.1 mouse_genomes_project 17 35579560 35580915 - H2-Aa protein_coding processed_transcript MGP_C57BL6NJ_T0010437.1 MGP_C57BL6NJ_G0008522.1 mouse_genomes_project 17 61282644 61282701 - Mir6978 miRNA miRNA MGP_C57BL6NJ_T0046165.1 MGP_C57BL6NJ_G0023636.1 mouse_genomes_project 17 20827085 20841000 + MGP_C57BL6NJ_P0046165 Zfp54 protein_coding protein_coding MGP_C57BL6NJ_T0046166.1 MGP_C57BL6NJ_G0023636.1 mouse_genomes_project 17 20827091 20840514 + MGP_C57BL6NJ_P0046166 Zfp54 protein_coding protein_coding MGP_C57BL6NJ_T0046167.1 MGP_C57BL6NJ_G0023636.1 mouse_genomes_project 17 20827116 20839305 + MGP_C57BL6NJ_P0046167 Zfp54 protein_coding protein_coding MGP_C57BL6NJ_T0048176.1 MGP_C57BL6NJ_G0024159.1 mouse_genomes_project 17 43221197 43227486 + MGP_C57BL6NJ_P0048176 Esp6 protein_coding protein_coding MGP_C57BL6NJ_T0046729.1 MGP_C57BL6NJ_G0023795.1 mouse_genomes_project 17 26286173 26290081 - MGP_C57BL6NJ_P0046729 Nme4 protein_coding protein_coding MGP_C57BL6NJ_T0046730.1 MGP_C57BL6NJ_G0023795.1 mouse_genomes_project 17 26287988 26290046 - Nme4 protein_coding retained_intron MGP_C57BL6NJ_T0045903.1 MGP_C57BL6NJ_G0023541.1 mouse_genomes_project 17 5900864 5933990 + MGP_C57BL6NJ_P0045903 Fgfr1op protein_coding protein_coding MGP_C57BL6NJ_T0045904.1 MGP_C57BL6NJ_G0023541.1 mouse_genomes_project 17 5900883 5912275 + Fgfr1op protein_coding retained_intron MGP_C57BL6NJ_T0045905.1 MGP_C57BL6NJ_G0023541.1 mouse_genomes_project 17 5900903 5933661 + MGP_C57BL6NJ_P0045905 Fgfr1op protein_coding protein_coding MGP_C57BL6NJ_T0045906.1 MGP_C57BL6NJ_G0023541.1 mouse_genomes_project 17 5918411 5932131 + MGP_C57BL6NJ_P0045906 Fgfr1op protein_coding protein_coding MGP_C57BL6NJ_T0048129.1 MGP_C57BL6NJ_G0024120.1 mouse_genomes_project 17 39651209 39676029 - MGP_C57BL6NJ_P0048129 Olfr126 protein_coding protein_coding MGP_C57BL6NJ_T0102914.1 MGP_C57BL6NJ_G0040708.1 mouse_genomes_project 17 20641219 20641402 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013590.1 MGP_C57BL6NJ_G0011635.1 mouse_genomes_project 17 51293477 51293671 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047532.1 MGP_C57BL6NJ_G0023981.1 mouse_genomes_project 17 35836025 35845570 - Btnl6 protein_coding unprocessed_pseudogene MGP_C57BL6NJ_T0047533.1 MGP_C57BL6NJ_G0023981.1 mouse_genomes_project 17 35836156 35845570 - MGP_C57BL6NJ_P0047533 Btnl6 protein_coding protein_coding MGP_C57BL6NJ_T0046016.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12001255 12052591 - MGP_C57BL6NJ_P0046016 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0046017.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12001261 12052615 - MGP_C57BL6NJ_P0046017 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0046018.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12002842 12052580 - MGP_C57BL6NJ_P0046018 Tcte2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046019.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12002860 12023719 - MGP_C57BL6NJ_P0046019 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0046020.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12005247 12052599 - MGP_C57BL6NJ_P0046020 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0046021.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12005247 12052814 - MGP_C57BL6NJ_P0046021 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0046022.1 MGP_C57BL6NJ_G0023570.1 mouse_genomes_project 17 12005247 12053038 - MGP_C57BL6NJ_P0046022 Tcte2 protein_coding protein_coding MGP_C57BL6NJ_T0010447.1 MGP_C57BL6NJ_G0008532.1 mouse_genomes_project 17 97946542 97946687 + miRNA miRNA MGP_C57BL6NJ_T0046898.1 MGP_C57BL6NJ_G0023834.1 mouse_genomes_project 17 28323374 28369453 + MGP_C57BL6NJ_P0046898 Uhrf1bp1 protein_coding protein_coding MGP_C57BL6NJ_T0046899.1 MGP_C57BL6NJ_G0023834.1 mouse_genomes_project 17 28324127 28349253 + Uhrf1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0046900.1 MGP_C57BL6NJ_G0023834.1 mouse_genomes_project 17 28359517 28364779 + Uhrf1bp1 protein_coding processed_transcript MGP_C57BL6NJ_T0013601.1 MGP_C57BL6NJ_G0011646.1 mouse_genomes_project 17 59171441 59171648 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100084.1 MGP_C57BL6NJ_G0038130.1 mouse_genomes_project 17 46586975 46587165 + Gm25783 snRNA snRNA MGP_C57BL6NJ_T0047128.1 MGP_C57BL6NJ_G0023884.1 mouse_genomes_project 17 31750481 31808576 + MGP_C57BL6NJ_P0047128 Umodl1 protein_coding protein_coding MGP_C57BL6NJ_T0047129.1 MGP_C57BL6NJ_G0023884.1 mouse_genomes_project 17 31750481 31808576 + MGP_C57BL6NJ_P0047129 Umodl1 protein_coding protein_coding MGP_C57BL6NJ_T0047130.1 MGP_C57BL6NJ_G0023884.1 mouse_genomes_project 17 31750485 31808576 + MGP_C57BL6NJ_P0047130 Umodl1 protein_coding protein_coding MGP_C57BL6NJ_T0046908.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28538747 28555537 - MGP_C57BL6NJ_P0046908 Tcp11 protein_coding protein_coding MGP_C57BL6NJ_T0046909.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28538748 28555592 - MGP_C57BL6NJ_P0046909 Tcp11 protein_coding protein_coding MGP_C57BL6NJ_T0046910.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28538751 28555520 - MGP_C57BL6NJ_P0046910 Tcp11 protein_coding protein_coding MGP_C57BL6NJ_T0046911.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28538797 28540477 - Tcp11 protein_coding processed_transcript MGP_C57BL6NJ_T0046912.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28541631 28555592 - MGP_C57BL6NJ_P0046912 Tcp11 protein_coding protein_coding MGP_C57BL6NJ_T0046913.1 MGP_C57BL6NJ_G0023837.1 mouse_genomes_project 17 28546649 28555554 - MGP_C57BL6NJ_P0046913 Tcp11 protein_coding protein_coding MGP_C57BL6NJ_T0048111.1 MGP_C57BL6NJ_G0024106.1 mouse_genomes_project 17 39232270 39244905 - MGP_C57BL6NJ_P0048111 protein_coding protein_coding MGP_C57BL6NJ_T0048970.1 MGP_C57BL6NJ_G0024415.1 mouse_genomes_project 17 76725200 76751833 + MGP_C57BL6NJ_P0048970 Spdya protein_coding protein_coding MGP_C57BL6NJ_T0048971.1 MGP_C57BL6NJ_G0024415.1 mouse_genomes_project 17 76725200 76762651 + MGP_C57BL6NJ_P0048971 Spdya protein_coding protein_coding MGP_C57BL6NJ_T0048972.1 MGP_C57BL6NJ_G0024415.1 mouse_genomes_project 17 76725211 76762651 + MGP_C57BL6NJ_P0048972 Spdya protein_coding protein_coding MGP_C57BL6NJ_T0048973.1 MGP_C57BL6NJ_G0024415.1 mouse_genomes_project 17 76729397 76761792 + MGP_C57BL6NJ_P0048973 Spdya protein_coding protein_coding MGP_C57BL6NJ_T0048253.1 MGP_C57BL6NJ_G0024197.1 mouse_genomes_project 17 48595050 48598667 + MGP_C57BL6NJ_P0048253 Slc35b2 protein_coding protein_coding MGP_C57BL6NJ_T0007106.1 MGP_C57BL6NJ_G0005850.1 mouse_genomes_project 17 35586168 35598754 - Gm20513 lincRNA lincRNA MGP_C57BL6NJ_T0048164.1 MGP_C57BL6NJ_G0024147.1 mouse_genomes_project 17 40812746 40819868 + MGP_C57BL6NJ_P0048164 Esp31 protein_coding protein_coding MGP_C57BL6NJ_T0048144.1 MGP_C57BL6NJ_G0024134.1 mouse_genomes_project 17 39973806 39975798 + MGP_C57BL6NJ_P0048144 protein_coding protein_coding MGP_C57BL6NJ_T0046200.1 MGP_C57BL6NJ_G0023653.1 mouse_genomes_project 17 22035484 22063948 + Zfp946 protein_coding processed_transcript MGP_C57BL6NJ_T0046201.1 MGP_C57BL6NJ_G0023653.1 mouse_genomes_project 17 22035521 22073885 + MGP_C57BL6NJ_P0046201 Zfp946 protein_coding protein_coding MGP_C57BL6NJ_T0046202.1 MGP_C57BL6NJ_G0023653.1 mouse_genomes_project 17 22035530 22073885 + MGP_C57BL6NJ_P0046202 Zfp946 protein_coding protein_coding MGP_C57BL6NJ_T0046203.1 MGP_C57BL6NJ_G0023653.1 mouse_genomes_project 17 22067654 22073034 + MGP_C57BL6NJ_P0046203 Zfp946 protein_coding protein_coding MGP_C57BL6NJ_T0102972.1 MGP_C57BL6NJ_G0040766.1 mouse_genomes_project 17 39405193 39406120 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046292.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23900311 23904409 + MGP_C57BL6NJ_P0046292 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0046293.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23900472 23904413 + MGP_C57BL6NJ_P0046293 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0046294.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23900552 23904409 + MGP_C57BL6NJ_P0046294 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0046295.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23900624 23904045 + MGP_C57BL6NJ_P0046295 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0046296.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23900716 23904405 + MGP_C57BL6NJ_P0046296 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0046297.1 MGP_C57BL6NJ_G0023689.1 mouse_genomes_project 17 23901014 23904413 + MGP_C57BL6NJ_P0046297 Sbp protein_coding protein_coding MGP_C57BL6NJ_T0047263.1 MGP_C57BL6NJ_G0023919.1 mouse_genomes_project 17 33806379 33820552 - MGP_C57BL6NJ_P0047263 Zfp799 protein_coding protein_coding MGP_C57BL6NJ_T0047264.1 MGP_C57BL6NJ_G0023919.1 mouse_genomes_project 17 33806385 33813120 - MGP_C57BL6NJ_P0047264 Zfp799 protein_coding protein_coding MGP_C57BL6NJ_T0047265.1 MGP_C57BL6NJ_G0023919.1 mouse_genomes_project 17 33811743 33820519 - MGP_C57BL6NJ_P0047265 Zfp799 protein_coding protein_coding MGP_C57BL6NJ_T0047266.1 MGP_C57BL6NJ_G0023919.1 mouse_genomes_project 17 33811997 33820537 - MGP_C57BL6NJ_P0047266 Zfp799 protein_coding protein_coding MGP_C57BL6NJ_T0047267.1 MGP_C57BL6NJ_G0023919.1 mouse_genomes_project 17 33812361 33820506 - MGP_C57BL6NJ_P0047267 Zfp799 protein_coding protein_coding MGP_C57BL6NJ_T0045902.1 MGP_C57BL6NJ_G0023540.1 mouse_genomes_project 17 5835230 5870477 - MGP_C57BL6NJ_P0045902 protein_coding protein_coding MGP_C57BL6NJ_T0048894.1 MGP_C57BL6NJ_G0024401.1 mouse_genomes_project 17 74050505 74204371 + MGP_C57BL6NJ_P0048894 Epb41l3 protein_coding protein_coding MGP_C57BL6NJ_T0048895.1 MGP_C57BL6NJ_G0024401.1 mouse_genomes_project 17 74050505 74204371 + MGP_C57BL6NJ_P0048895 Epb41l3 protein_coding protein_coding MGP_C57BL6NJ_T0048896.1 MGP_C57BL6NJ_G0024401.1 mouse_genomes_project 17 74103720 74204377 + MGP_C57BL6NJ_P0048896 Epb41l3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048343.1 MGP_C57BL6NJ_G0024210.1 mouse_genomes_project 17 49263373 49295399 - MGP_C57BL6NJ_P0048343 Polh protein_coding protein_coding MGP_C57BL6NJ_T0013538.1 MGP_C57BL6NJ_G0011583.1 mouse_genomes_project 17 21486481 21486929 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046169.1 MGP_C57BL6NJ_G0023638.1 mouse_genomes_project 17 20899520 20920259 + MGP_C57BL6NJ_P0046169 Zfp53 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048326.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251462 49259801 + MGP_C57BL6NJ_P0048326 Gtpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0048327.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251462 49259799 + MGP_C57BL6NJ_P0048327 Gtpbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048328.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251479 49253936 + Gtpbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0048329.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251496 49259767 + MGP_C57BL6NJ_P0048329 Gtpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0048330.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251541 49254738 + MGP_C57BL6NJ_P0048330 Gtpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0048331.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251591 49252589 + Gtpbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0048332.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49251725 49255181 + Gtpbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0048333.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49253463 49255252 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048334.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49253656 49256226 + Gtpbp2 protein_coding processed_transcript MGP_C57BL6NJ_T0048335.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49253748 49255619 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048336.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49256126 49258313 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048337.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49256208 49257763 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048338.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49256861 49258665 + MGP_C57BL6NJ_P0048338 Gtpbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048339.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49257297 49258452 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048340.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49257418 49258642 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0048341.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49257661 49258825 + MGP_C57BL6NJ_P0048341 Gtpbp2 protein_coding protein_coding MGP_C57BL6NJ_T0048342.1 MGP_C57BL6NJ_G0024209.1 mouse_genomes_project 17 49258066 49258841 + Gtpbp2 protein_coding retained_intron MGP_C57BL6NJ_T0099048.1 MGP_C57BL6NJ_G0037112.1 mouse_genomes_project 17 101942028 101942135 + Gm23964 rRNA rRNA MGP_C57BL6NJ_T0047047.1 MGP_C57BL6NJ_G0023863.1 mouse_genomes_project 17 29785145 29798857 + MGP_C57BL6NJ_P0047047 Rab44 protein_coding protein_coding MGP_C57BL6NJ_T0047048.1 MGP_C57BL6NJ_G0023863.1 mouse_genomes_project 17 29786427 29798120 + Rab44 protein_coding processed_transcript MGP_C57BL6NJ_T0007084.1 MGP_C57BL6NJ_G0005832.1 mouse_genomes_project 17 27119661 27168007 + lincRNA lincRNA MGP_C57BL6NJ_T0010444.1 MGP_C57BL6NJ_G0008529.1 mouse_genomes_project 17 84066154 84066240 + Gm25069 miRNA miRNA MGP_C57BL6NJ_T0046309.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24065507 24136585 - MGP_C57BL6NJ_P0046309 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046310.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24065515 24136678 - MGP_C57BL6NJ_P0046310 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046311.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24067644 24136695 - MGP_C57BL6NJ_P0046311 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046312.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24081345 24088210 - Pdpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0046313.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24084748 24147385 - Pdpk1 protein_coding processed_transcript MGP_C57BL6NJ_T0046314.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24098003 24136681 - Pdpk1 protein_coding retained_intron MGP_C57BL6NJ_T0046315.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24100842 24135932 - MGP_C57BL6NJ_P0046315 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046316.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24100894 24116139 - MGP_C57BL6NJ_P0046316 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0046317.1 MGP_C57BL6NJ_G0023696.1 mouse_genomes_project 17 24104899 24136253 - MGP_C57BL6NJ_P0046317 Pdpk1 protein_coding protein_coding MGP_C57BL6NJ_T0018024.1 MGP_C57BL6NJ_G0015737.1 mouse_genomes_project 17 30595704 30602687 + Gm16758 processed_transcript processed_transcript MGP_C57BL6NJ_T0047268.1 MGP_C57BL6NJ_G0023920.1 mouse_genomes_project 17 33888627 33898101 - MGP_C57BL6NJ_P0047268 Zfp870 protein_coding protein_coding MGP_C57BL6NJ_T0047269.1 MGP_C57BL6NJ_G0023920.1 mouse_genomes_project 17 33892070 33903401 - MGP_C57BL6NJ_P0047269 Zfp870 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048783.1 MGP_C57BL6NJ_G0024361.1 mouse_genomes_project 17 61140421 61142821 + MGP_C57BL6NJ_P0048783 Tnfsf9 protein_coding protein_coding MGP_C57BL6NJ_T0102447.1 MGP_C57BL6NJ_G0040345.1 mouse_genomes_project 17 76685770 76729683 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102448.1 MGP_C57BL6NJ_G0040345.1 mouse_genomes_project 17 76687940 76714785 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0100102.1 MGP_C57BL6NJ_G0038148.1 mouse_genomes_project 17 90906917 90907026 + Gm26066 snRNA snRNA MGP_C57BL6NJ_T0047965.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595157 37596488 + Ppp1r10 protein_coding retained_intron MGP_C57BL6NJ_T0047966.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595289 37623763 + MGP_C57BL6NJ_P0047966 Ppp1r10 protein_coding protein_coding MGP_C57BL6NJ_T0047967.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595302 37596064 + Ppp1r10 protein_coding processed_transcript MGP_C57BL6NJ_T0047968.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595505 37597082 + Ppp1r10 protein_coding retained_intron MGP_C57BL6NJ_T0047969.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595721 37613242 + MGP_C57BL6NJ_P0047969 Ppp1r10 protein_coding protein_coding MGP_C57BL6NJ_T0047970.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37595919 37623761 + MGP_C57BL6NJ_P0047970 Ppp1r10 protein_coding protein_coding MGP_C57BL6NJ_T0047971.1 MGP_C57BL6NJ_G0024064.1 mouse_genomes_project 17 37615440 37617197 + Ppp1r10 protein_coding retained_intron MGP_C57BL6NJ_T0100075.1 MGP_C57BL6NJ_G0038121.1 mouse_genomes_project 17 33787524 33787688 - Gm23294 snRNA snRNA MGP_C57BL6NJ_T0007105.1 MGP_C57BL6NJ_G0005849.1 mouse_genomes_project 17 35540689 35541897 + Gm20506 lincRNA lincRNA MGP_C57BL6NJ_T0102895.1 MGP_C57BL6NJ_G0040689.1 mouse_genomes_project 17 17780968 17781094 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047833.1 MGP_C57BL6NJ_G0024040.1 mouse_genomes_project 17 37052891 37064467 + MGP_C57BL6NJ_P0047833 H2-Q10 protein_coding protein_coding MGP_C57BL6NJ_T0047834.1 MGP_C57BL6NJ_G0024040.1 mouse_genomes_project 17 37052891 37064467 + MGP_C57BL6NJ_P0047834 H2-Q10 protein_coding protein_coding MGP_C57BL6NJ_T0048969.1 MGP_C57BL6NJ_G0024414.1 mouse_genomes_project 17 76647868 76685732 - MGP_C57BL6NJ_P0048969 Ndc80 protein_coding protein_coding MGP_C57BL6NJ_T0013551.1 MGP_C57BL6NJ_G0011596.1 mouse_genomes_project 17 35937249 35937657 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048252.1 MGP_C57BL6NJ_G0024196.1 mouse_genomes_project 17 48584578 48592424 + MGP_C57BL6NJ_P0048252 Nfkbie protein_coding protein_coding MGP_C57BL6NJ_T0047377.1 MGP_C57BL6NJ_G0023948.1 mouse_genomes_project 17 35119524 35122032 + MGP_C57BL6NJ_P0047377 Zbtb22 protein_coding protein_coding MGP_C57BL6NJ_T0047378.1 MGP_C57BL6NJ_G0023948.1 mouse_genomes_project 17 35119524 35119850 + MGP_C57BL6NJ_P0047378 Zbtb22 protein_coding protein_coding MGP_C57BL6NJ_T0049040.1 MGP_C57BL6NJ_G0024438.1 mouse_genomes_project 17 80934998 81042472 + MGP_C57BL6NJ_P0049040 Rasgrp3 protein_coding protein_coding MGP_C57BL6NJ_T0049041.1 MGP_C57BL6NJ_G0024438.1 mouse_genomes_project 17 80972391 81042472 + MGP_C57BL6NJ_P0049041 Rasgrp3 protein_coding protein_coding MGP_C57BL6NJ_T0047546.1 MGP_C57BL6NJ_G0023983.1 mouse_genomes_project 17 35984103 35986052 + MGP_C57BL6NJ_P0047546 Gpsm3 protein_coding protein_coding MGP_C57BL6NJ_T0047547.1 MGP_C57BL6NJ_G0023983.1 mouse_genomes_project 17 35984389 35986052 + MGP_C57BL6NJ_P0047547 Gpsm3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047548.1 MGP_C57BL6NJ_G0023983.1 mouse_genomes_project 17 35984528 35985938 + MGP_C57BL6NJ_P0047548 Gpsm3 protein_coding protein_coding MGP_C57BL6NJ_T0046415.1 MGP_C57BL6NJ_G0023722.1 mouse_genomes_project 17 24742612 24749442 - MGP_C57BL6NJ_P0046415 Syngr3 protein_coding protein_coding MGP_C57BL6NJ_T0046416.1 MGP_C57BL6NJ_G0023722.1 mouse_genomes_project 17 24744153 24747686 - Syngr3 protein_coding processed_transcript MGP_C57BL6NJ_T0010414.1 MGP_C57BL6NJ_G0008499.1 mouse_genomes_project 17 31764500 31764598 + Gm24026 miRNA miRNA MGP_C57BL6NJ_T0013612.1 MGP_C57BL6NJ_G0011657.1 mouse_genomes_project 17 75395157 75395601 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047374.1 MGP_C57BL6NJ_G0023947.1 mouse_genomes_project 17 35045551 35052477 + MGP_C57BL6NJ_P0047374 Cd320 protein_coding protein_coding MGP_C57BL6NJ_T0047375.1 MGP_C57BL6NJ_G0023947.1 mouse_genomes_project 17 35045563 35048779 + Cd320 protein_coding retained_intron MGP_C57BL6NJ_T0047376.1 MGP_C57BL6NJ_G0023947.1 mouse_genomes_project 17 35045886 35051454 + MGP_C57BL6NJ_P0047376 Cd320 protein_coding protein_coding MGP_C57BL6NJ_T0046846.1 MGP_C57BL6NJ_G0023821.1 mouse_genomes_project 17 27417369 27490358 + MGP_C57BL6NJ_P0046846 Itpr3 protein_coding protein_coding MGP_C57BL6NJ_T0101370.1 MGP_C57BL6NJ_G0039416.1 mouse_genomes_project 17 25424494 25424631 + Gm25921 snoRNA snoRNA MGP_C57BL6NJ_T0049091.1 MGP_C57BL6NJ_G0024460.1 mouse_genomes_project 17 86140100 86147317 - MGP_C57BL6NJ_P0049091 Srsf7 protein_coding protein_coding MGP_C57BL6NJ_T0013556.1 MGP_C57BL6NJ_G0011601.1 mouse_genomes_project 17 37627183 37627510 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048199.1 MGP_C57BL6NJ_G0024174.1 mouse_genomes_project 17 45571116 45671376 - MGP_C57BL6NJ_P0048199 Cd2ap protein_coding protein_coding MGP_C57BL6NJ_T0045938.1 MGP_C57BL6NJ_G0023548.1 mouse_genomes_project 17 6336293 6337392 - Gm17087 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0045939.1 MGP_C57BL6NJ_G0023548.1 mouse_genomes_project 17 6336840 6337311 - MGP_C57BL6NJ_P0045939 Gm17087 protein_coding protein_coding MGP_C57BL6NJ_T0047987.1 MGP_C57BL6NJ_G0024067.1 mouse_genomes_project 17 37680096 37693802 + MGP_C57BL6NJ_P0047987 Gnl1 protein_coding protein_coding MGP_C57BL6NJ_T0047988.1 MGP_C57BL6NJ_G0024067.1 mouse_genomes_project 17 37683905 37684661 + Gnl1 protein_coding retained_intron MGP_C57BL6NJ_T0100092.1 MGP_C57BL6NJ_G0038138.1 mouse_genomes_project 17 63739211 63739318 - Gm23203 snRNA snRNA MGP_C57BL6NJ_T0048374.1 MGP_C57BL6NJ_G0024218.1 mouse_genomes_project 17 49492351 49525830 + MGP_C57BL6NJ_P0048374 Zfp318 protein_coding protein_coding MGP_C57BL6NJ_T0048375.1 MGP_C57BL6NJ_G0024218.1 mouse_genomes_project 17 49492371 49531932 + MGP_C57BL6NJ_P0048375 Zfp318 protein_coding protein_coding MGP_C57BL6NJ_T0048376.1 MGP_C57BL6NJ_G0024218.1 mouse_genomes_project 17 49511077 49521734 + MGP_C57BL6NJ_P0048376 Zfp318 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048377.1 MGP_C57BL6NJ_G0024218.1 mouse_genomes_project 17 49516875 49520377 + Zfp318 protein_coding retained_intron MGP_C57BL6NJ_T0048378.1 MGP_C57BL6NJ_G0024218.1 mouse_genomes_project 17 49520644 49522337 + Zfp318 protein_coding retained_intron MGP_C57BL6NJ_T0047980.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37660249 37676264 - MGP_C57BL6NJ_P0047980 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047981.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37661343 37675747 - MGP_C57BL6NJ_P0047981 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047982.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37666892 37675669 - MGP_C57BL6NJ_P0047982 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047983.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37667128 37676029 - MGP_C57BL6NJ_P0047983 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047984.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37667296 37676029 - MGP_C57BL6NJ_P0047984 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047985.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37667551 37675900 - MGP_C57BL6NJ_P0047985 Prr3 protein_coding protein_coding MGP_C57BL6NJ_T0047986.1 MGP_C57BL6NJ_G0024066.1 mouse_genomes_project 17 37667662 37675520 - Prr3 protein_coding retained_intron MGP_C57BL6NJ_T0048880.1 MGP_C57BL6NJ_G0024395.1 mouse_genomes_project 17 71515032 72235486 - MGP_C57BL6NJ_P0048880 Ptprm protein_coding protein_coding MGP_C57BL6NJ_T0048881.1 MGP_C57BL6NJ_G0024395.1 mouse_genomes_project 17 71665164 72235056 - MGP_C57BL6NJ_P0048881 Ptprm protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049082.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85941603 85977199 - MGP_C57BL6NJ_P0049082 Hnrnpll protein_coding protein_coding MGP_C57BL6NJ_T0049083.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85941603 85977092 - MGP_C57BL6NJ_P0049083 Hnrnpll protein_coding protein_coding MGP_C57BL6NJ_T0049084.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85941953 85977092 - MGP_C57BL6NJ_P0049084 Hnrnpll protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049085.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85942457 85947673 - Hnrnpll protein_coding retained_intron MGP_C57BL6NJ_T0049086.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85949265 85977059 - Hnrnpll protein_coding retained_intron MGP_C57BL6NJ_T0049087.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85957156 85977000 - Hnrnpll protein_coding retained_intron MGP_C57BL6NJ_T0049088.1 MGP_C57BL6NJ_G0024458.1 mouse_genomes_project 17 85963342 85977133 - Hnrnpll protein_coding retained_intron MGP_C57BL6NJ_T0102964.1 MGP_C57BL6NJ_G0040758.1 mouse_genomes_project 17 38682205 38683672 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046130.1 MGP_C57BL6NJ_G0023608.1 mouse_genomes_project 17 18815990 18850772 + MGP_C57BL6NJ_P0046130 Vmn2r102 protein_coding protein_coding MGP_C57BL6NJ_T0048741.1 MGP_C57BL6NJ_G0024335.1 mouse_genomes_project 17 60568843 60571163 - MGP_C57BL6NJ_P0048741 2410015M20Rik protein_coding protein_coding MGP_C57BL6NJ_T0011690.1 MGP_C57BL6NJ_G0009775.1 mouse_genomes_project 17 49514895 49515219 + Gm23037 misc_RNA misc_RNA MGP_C57BL6NJ_T0047323.1 MGP_C57BL6NJ_G0023939.1 mouse_genomes_project 17 34787378 34795029 + MGP_C57BL6NJ_P0047323 Pram1 protein_coding protein_coding MGP_C57BL6NJ_T0047324.1 MGP_C57BL6NJ_G0023939.1 mouse_genomes_project 17 34787417 34795023 + MGP_C57BL6NJ_P0047324 Pram1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047325.1 MGP_C57BL6NJ_G0023939.1 mouse_genomes_project 17 34794139 34794961 + Pram1 protein_coding retained_intron MGP_C57BL6NJ_T0046411.1 MGP_C57BL6NJ_G0023719.1 mouse_genomes_project 17 24687806 24700681 - MGP_C57BL6NJ_P0046411 Slc9a3r2 protein_coding protein_coding MGP_C57BL6NJ_T0046412.1 MGP_C57BL6NJ_G0023719.1 mouse_genomes_project 17 24687806 24695086 - MGP_C57BL6NJ_P0046412 Slc9a3r2 protein_coding protein_coding MGP_C57BL6NJ_T0049053.1 MGP_C57BL6NJ_G0024446.1 mouse_genomes_project 17 84669648 84701328 - MGP_C57BL6NJ_P0049053 Eif2ak2 protein_coding protein_coding MGP_C57BL6NJ_T0049054.1 MGP_C57BL6NJ_G0024446.1 mouse_genomes_project 17 84674253 84677880 - Eif2ak2 protein_coding processed_transcript MGP_C57BL6NJ_T0049055.1 MGP_C57BL6NJ_G0024446.1 mouse_genomes_project 17 84692548 84701303 - Eif2ak2 protein_coding processed_transcript MGP_C57BL6NJ_T0049056.1 MGP_C57BL6NJ_G0024446.1 mouse_genomes_project 17 84696885 84701309 - Eif2ak2 protein_coding processed_transcript MGP_C57BL6NJ_T0046822.1 MGP_C57BL6NJ_G0023815.1 mouse_genomes_project 17 27263453 27268217 + MGP_C57BL6NJ_P0046822 Phf1 protein_coding protein_coding MGP_C57BL6NJ_T0048975.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76846952 76858983 + Fam179a protein_coding processed_transcript MGP_C57BL6NJ_T0048976.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76846952 76905461 + MGP_C57BL6NJ_P0048976 Fam179a protein_coding protein_coding MGP_C57BL6NJ_T0048977.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76846956 76862973 + Fam179a protein_coding processed_transcript MGP_C57BL6NJ_T0048978.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76858615 76905461 + MGP_C57BL6NJ_P0048978 Fam179a protein_coding protein_coding MGP_C57BL6NJ_T0048979.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76860509 76905335 + MGP_C57BL6NJ_P0048979 Fam179a protein_coding protein_coding MGP_C57BL6NJ_T0048980.1 MGP_C57BL6NJ_G0024417.1 mouse_genomes_project 17 76887010 76905461 + Fam179a protein_coding retained_intron MGP_C57BL6NJ_T0013541.1 MGP_C57BL6NJ_G0011586.1 mouse_genomes_project 17 25446545 25451409 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007071.1 MGP_C57BL6NJ_G0005821.1 mouse_genomes_project 17 15869413 16045228 + lincRNA lincRNA MGP_C57BL6NJ_T0013593.1 MGP_C57BL6NJ_G0011638.1 mouse_genomes_project 17 57417655 57418422 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046214.1 MGP_C57BL6NJ_G0023660.1 mouse_genomes_project 17 22961922 22985458 - Zfp40 protein_coding processed_transcript MGP_C57BL6NJ_T0046215.1 MGP_C57BL6NJ_G0023660.1 mouse_genomes_project 17 22963250 22985433 - MGP_C57BL6NJ_P0046215 Zfp40 protein_coding protein_coding MGP_C57BL6NJ_T0046216.1 MGP_C57BL6NJ_G0023660.1 mouse_genomes_project 17 22965314 22985499 - Zfp40 protein_coding processed_transcript MGP_C57BL6NJ_T0046217.1 MGP_C57BL6NJ_G0023660.1 mouse_genomes_project 17 22983593 22985500 - MGP_C57BL6NJ_P0046217 Zfp40 protein_coding protein_coding MGP_C57BL6NJ_T0046098.1 MGP_C57BL6NJ_G0023591.1 mouse_genomes_project 17 16488676 16524904 + MGP_C57BL6NJ_P0046098 Vmn2r90 protein_coding protein_coding MGP_C57BL6NJ_T0047914.1 MGP_C57BL6NJ_G0024057.1 mouse_genomes_project 17 37507544 37527383 + MGP_C57BL6NJ_P0047914 Mdc1 protein_coding protein_coding MGP_C57BL6NJ_T0047915.1 MGP_C57BL6NJ_G0024057.1 mouse_genomes_project 17 37507684 37527389 + MGP_C57BL6NJ_P0047915 Mdc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047916.1 MGP_C57BL6NJ_G0024057.1 mouse_genomes_project 17 37507705 37512066 + MGP_C57BL6NJ_P0047916 Mdc1 protein_coding protein_coding MGP_C57BL6NJ_T0011704.1 MGP_C57BL6NJ_G0009789.1 mouse_genomes_project 17 91997657 91997850 + Gm27427 misc_RNA misc_RNA MGP_C57BL6NJ_T0049195.1 MGP_C57BL6NJ_G0024507.1 mouse_genomes_project 17 93903311 93941651 - MGP_C57BL6NJ_P0049195 1700011E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0049196.1 MGP_C57BL6NJ_G0024507.1 mouse_genomes_project 17 93903316 93941597 - MGP_C57BL6NJ_P0049196 1700011E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0049197.1 MGP_C57BL6NJ_G0024507.1 mouse_genomes_project 17 93925289 93941618 - MGP_C57BL6NJ_P0049197 1700011E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0049198.1 MGP_C57BL6NJ_G0024507.1 mouse_genomes_project 17 93931574 93941545 - 1700011E24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0049199.1 MGP_C57BL6NJ_G0024507.1 mouse_genomes_project 17 93931584 93941545 - 1700011E24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0048136.1 MGP_C57BL6NJ_G0024127.1 mouse_genomes_project 17 39815390 39821268 + MGP_C57BL6NJ_P0048136 Olfr121 protein_coding protein_coding MGP_C57BL6NJ_T0048819.1 MGP_C57BL6NJ_G0024378.1 mouse_genomes_project 17 68932397 68986267 - MGP_C57BL6NJ_P0048819 Pja2 protein_coding protein_coding MGP_C57BL6NJ_T0048820.1 MGP_C57BL6NJ_G0024378.1 mouse_genomes_project 17 68932398 68966180 - MGP_C57BL6NJ_P0048820 Pja2 protein_coding protein_coding MGP_C57BL6NJ_T0048821.1 MGP_C57BL6NJ_G0024378.1 mouse_genomes_project 17 68932398 68966180 - MGP_C57BL6NJ_P0048821 Pja2 protein_coding protein_coding MGP_C57BL6NJ_T0048822.1 MGP_C57BL6NJ_G0024378.1 mouse_genomes_project 17 68932412 68986216 - MGP_C57BL6NJ_P0048822 Pja2 protein_coding protein_coding MGP_C57BL6NJ_T0048782.1 MGP_C57BL6NJ_G0024360.1 mouse_genomes_project 17 61126751 61140979 - MGP_C57BL6NJ_P0048782 protein_coding protein_coding MGP_C57BL6NJ_T0046680.1 MGP_C57BL6NJ_G0023784.1 mouse_genomes_project 17 26014408 26020643 - MGP_C57BL6NJ_P0046680 Fam195a protein_coding protein_coding MGP_C57BL6NJ_T0046930.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28726744 28806207 + MGP_C57BL6NJ_P0046930 Ppard protein_coding protein_coding MGP_C57BL6NJ_T0046931.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28726756 28798770 + Ppard protein_coding retained_intron MGP_C57BL6NJ_T0046932.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28726772 28802214 + Ppard protein_coding processed_transcript MGP_C57BL6NJ_T0046933.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28726797 28802292 + Ppard protein_coding retained_intron MGP_C57BL6NJ_T0046934.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28772535 28773991 + Ppard protein_coding processed_transcript MGP_C57BL6NJ_T0046935.1 MGP_C57BL6NJ_G0023841.1 mouse_genomes_project 17 28773020 28801069 + MGP_C57BL6NJ_P0046935 Ppard protein_coding protein_coding MGP_C57BL6NJ_T0007126.1 MGP_C57BL6NJ_G0005867.1 mouse_genomes_project 17 51206431 51207494 + Gm15556 lincRNA lincRNA MGP_C57BL6NJ_T0013535.1 MGP_C57BL6NJ_G0011580.1 mouse_genomes_project 17 14040916 14042251 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047696.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36474772 36490068 + MGP_C57BL6NJ_P0047696 Vars protein_coding protein_coding MGP_C57BL6NJ_T0047697.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36474836 36489776 + MGP_C57BL6NJ_P0047697 Vars protein_coding protein_coding MGP_C57BL6NJ_T0047698.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36475102 36478592 + MGP_C57BL6NJ_P0047698 Vars protein_coding protein_coding MGP_C57BL6NJ_T0047699.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36476446 36478642 + MGP_C57BL6NJ_P0047699 Vars protein_coding protein_coding MGP_C57BL6NJ_T0047700.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36476503 36490068 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047701.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36478083 36478851 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047702.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36478501 36479119 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047703.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36484960 36486145 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047704.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36485909 36486828 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047705.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36487028 36488215 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047706.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36487572 36488793 + MGP_C57BL6NJ_P0047706 Vars protein_coding protein_coding MGP_C57BL6NJ_T0047707.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36487581 36488583 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0047708.1 MGP_C57BL6NJ_G0024010.1 mouse_genomes_project 17 36488710 36489757 + Vars protein_coding retained_intron MGP_C57BL6NJ_T0010426.1 MGP_C57BL6NJ_G0008511.1 mouse_genomes_project 17 37535998 37536094 - Gm28033 miRNA miRNA MGP_C57BL6NJ_T0003915.1 MGP_C57BL6NJ_G0003513.1 mouse_genomes_project 17 46471794 46474964 - 1700071M16Rik antisense antisense MGP_C57BL6NJ_T0003916.1 MGP_C57BL6NJ_G0003513.1 mouse_genomes_project 17 46471987 46474964 - 1700071M16Rik antisense antisense MGP_C57BL6NJ_T0003917.1 MGP_C57BL6NJ_G0003513.1 mouse_genomes_project 17 46474614 46475897 - 1700071M16Rik antisense antisense MGP_C57BL6NJ_T0003918.1 MGP_C57BL6NJ_G0003513.1 mouse_genomes_project 17 46474614 46475887 - 1700071M16Rik antisense antisense MGP_C57BL6NJ_T0046634.1 MGP_C57BL6NJ_G0023776.1 mouse_genomes_project 17 25959228 25971608 + MGP_C57BL6NJ_P0046634 Fbxl16 protein_coding protein_coding MGP_C57BL6NJ_T0013573.1 MGP_C57BL6NJ_G0011618.1 mouse_genomes_project 17 39140596 39141193 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003886.1 MGP_C57BL6NJ_G0003489.1 mouse_genomes_project 17 28431736 28437397 - Gm15597 antisense antisense MGP_C57BL6NJ_T0049078.1 MGP_C57BL6NJ_G0024455.1 mouse_genomes_project 17 85516485 85518490 + MGP_C57BL6NJ_P0049078 4921513D11Rik protein_coding protein_coding MGP_C57BL6NJ_T0048219.1 MGP_C57BL6NJ_G0024184.1 mouse_genomes_project 17 46552248 46642415 + MGP_C57BL6NJ_P0048219 Cyp39a1 protein_coding protein_coding MGP_C57BL6NJ_T0102939.1 MGP_C57BL6NJ_G0040733.1 mouse_genomes_project 17 37742705 37821704 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013617.1 MGP_C57BL6NJ_G0011662.1 mouse_genomes_project 17 81846653 81847100 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013577.1 MGP_C57BL6NJ_G0011622.1 mouse_genomes_project 17 39958975 39959633 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046023.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12051351 12223610 + MGP_C57BL6NJ_P0046023 Mllt4 protein_coding protein_coding MGP_C57BL6NJ_T0046024.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12051358 12223966 + MGP_C57BL6NJ_P0046024 Mllt4 protein_coding protein_coding MGP_C57BL6NJ_T0046025.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12052817 12154188 + Mllt4 protein_coding processed_transcript MGP_C57BL6NJ_T0046026.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12091701 12196616 + MGP_C57BL6NJ_P0046026 Mllt4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046027.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12091701 12196679 + MGP_C57BL6NJ_P0046027 Mllt4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046028.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12150924 12155545 + Mllt4 protein_coding retained_intron MGP_C57BL6NJ_T0046029.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12151695 12155232 + Mllt4 protein_coding processed_transcript MGP_C57BL6NJ_T0046030.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12186052 12193514 + Mllt4 protein_coding processed_transcript MGP_C57BL6NJ_T0046031.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12192994 12193879 + Mllt4 protein_coding retained_intron MGP_C57BL6NJ_T0046032.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12216337 12223618 + MGP_C57BL6NJ_P0046032 Mllt4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046033.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12216477 12222185 + Mllt4 protein_coding retained_intron MGP_C57BL6NJ_T0046034.1 MGP_C57BL6NJ_G0023571.1 mouse_genomes_project 17 12216639 12223611 + Mllt4 protein_coding retained_intron MGP_C57BL6NJ_T0010398.1 MGP_C57BL6NJ_G0008483.1 mouse_genomes_project 17 25892797 25892889 - Gm25083 miRNA miRNA MGP_C57BL6NJ_T0013587.1 MGP_C57BL6NJ_G0011632.1 mouse_genomes_project 17 50212597 50213050 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010435.1 MGP_C57BL6NJ_G0008520.1 mouse_genomes_project 17 60181591 60181702 + Mir7b miRNA miRNA MGP_C57BL6NJ_T0018043.1 MGP_C57BL6NJ_G0015744.1 mouse_genomes_project 17 39261768 39263777 + Gm20429 processed_transcript retained_intron MGP_C57BL6NJ_T0018044.1 MGP_C57BL6NJ_G0015744.1 mouse_genomes_project 17 39263157 39277051 + Gm20429 processed_transcript antisense MGP_C57BL6NJ_T0099039.1 MGP_C57BL6NJ_G0037103.1 mouse_genomes_project 17 33791824 33791935 - Gm25555 rRNA rRNA MGP_C57BL6NJ_T0046040.1 MGP_C57BL6NJ_G0023576.1 mouse_genomes_project 17 13354889 13357642 + MGP_C57BL6NJ_P0046040 1600012H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0046041.1 MGP_C57BL6NJ_G0023576.1 mouse_genomes_project 17 13354935 13357640 + MGP_C57BL6NJ_P0046041 1600012H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0046042.1 MGP_C57BL6NJ_G0023576.1 mouse_genomes_project 17 13354974 13356692 + MGP_C57BL6NJ_P0046042 1600012H06Rik protein_coding protein_coding MGP_C57BL6NJ_T0046043.1 MGP_C57BL6NJ_G0023576.1 mouse_genomes_project 17 13354976 13371276 + 1600012H06Rik protein_coding processed_transcript MGP_C57BL6NJ_T0003878.1 MGP_C57BL6NJ_G0003483.1 mouse_genomes_project 17 24785793 24786228 - Snhg9 antisense antisense MGP_C57BL6NJ_T0001118.1 MGP_C57BL6NJ_G0001024.1 mouse_genomes_project 17 55328122 55331278 - TEC TEC MGP_C57BL6NJ_T0102975.1 MGP_C57BL6NJ_G0040769.1 mouse_genomes_project 17 39432285 39433006 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0012083.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37803983 37805671 - H2-Bl polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0012084.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012084 H2-Bl polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012085.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012085 H2-Bl polymorphic_pseudogene nonsense_mediated_decay MGP_C57BL6NJ_T0012086.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012086 H2-Bl polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012087.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012087 H2-Bl polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012088.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012088 H2-Bl polymorphic_pseudogene protein_coding MGP_C57BL6NJ_T0012089.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012089 H2-Bl polymorphic_pseudogene nonsense_mediated_decay MGP_C57BL6NJ_T0012090.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012090 H2-Bl polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012091.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012091 H2-Bl polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012092.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804057 37809417 - MGP_C57BL6NJ_P0012092 H2-Bl polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0012093.1 MGP_C57BL6NJ_G0010156.1 mouse_genomes_project 17 37804170 37809387 - MGP_C57BL6NJ_P0012093 H2-Bl polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0049200.1 MGP_C57BL6NJ_G0024508.1 mouse_genomes_project 17 93952517 93970261 - MGP_C57BL6NJ_P0049200 Calm2 protein_coding protein_coding MGP_C57BL6NJ_T0049201.1 MGP_C57BL6NJ_G0024508.1 mouse_genomes_project 17 93952827 93970174 - Calm2 protein_coding retained_intron MGP_C57BL6NJ_T0049202.1 MGP_C57BL6NJ_G0024508.1 mouse_genomes_project 17 93953938 93970175 - Calm2 protein_coding retained_intron MGP_C57BL6NJ_T0098840.1 MGP_C57BL6NJ_G0036904.1 mouse_genomes_project 17 39612397 39614621 - pseudogene pseudogene MGP_C57BL6NJ_T0047607.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267428 36284861 - MGP_C57BL6NJ_P0047607 Stk19 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047608.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267435 36284930 - MGP_C57BL6NJ_P0047608 Stk19 protein_coding protein_coding MGP_C57BL6NJ_T0047609.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267436 36284852 - MGP_C57BL6NJ_P0047609 Stk19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047610.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267437 36273129 - Stk19 protein_coding retained_intron MGP_C57BL6NJ_T0047611.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267524 36284450 - MGP_C57BL6NJ_P0047611 Stk19 protein_coding protein_coding MGP_C57BL6NJ_T0047612.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267631 36280480 - MGP_C57BL6NJ_P0047612 Stk19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047613.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36267666 36272448 - Stk19 protein_coding processed_transcript MGP_C57BL6NJ_T0047614.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36279850 36284912 - Stk19 protein_coding retained_intron MGP_C57BL6NJ_T0047615.1 MGP_C57BL6NJ_G0023996.1 mouse_genomes_project 17 36280439 36284739 - Stk19 protein_coding retained_intron MGP_C57BL6NJ_T0101387.1 MGP_C57BL6NJ_G0039433.1 mouse_genomes_project 17 78484084 78484189 + Gm25406 snoRNA snoRNA MGP_C57BL6NJ_T0102920.1 MGP_C57BL6NJ_G0040714.1 mouse_genomes_project 17 27201370 27201760 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047395.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141301 35142824 - MGP_C57BL6NJ_P0047395 Pfdn6 protein_coding protein_coding MGP_C57BL6NJ_T0047396.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141390 35142811 - MGP_C57BL6NJ_P0047396 Pfdn6 protein_coding protein_coding MGP_C57BL6NJ_T0047397.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141399 35142806 - MGP_C57BL6NJ_P0047397 Pfdn6 protein_coding protein_coding MGP_C57BL6NJ_T0047398.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141403 35142785 - MGP_C57BL6NJ_P0047398 Pfdn6 protein_coding protein_coding MGP_C57BL6NJ_T0047399.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141426 35142811 - MGP_C57BL6NJ_P0047399 Pfdn6 protein_coding protein_coding MGP_C57BL6NJ_T0047400.1 MGP_C57BL6NJ_G0023951.1 mouse_genomes_project 17 35141838 35142300 - Pfdn6 protein_coding retained_intron MGP_C57BL6NJ_T0047459.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35310354 35337562 + MGP_C57BL6NJ_P0047459 Col11a2 protein_coding protein_coding MGP_C57BL6NJ_T0047460.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35310354 35337119 + MGP_C57BL6NJ_P0047460 Col11a2 protein_coding protein_coding MGP_C57BL6NJ_T0047461.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35310354 35323395 + MGP_C57BL6NJ_P0047461 Col11a2 protein_coding protein_coding MGP_C57BL6NJ_T0047462.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35310354 35337119 + MGP_C57BL6NJ_P0047462 Col11a2 protein_coding protein_coding MGP_C57BL6NJ_T0047463.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35310572 35336685 + MGP_C57BL6NJ_P0047463 Col11a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047464.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35319157 35330829 + MGP_C57BL6NJ_P0047464 Col11a2 protein_coding protein_coding MGP_C57BL6NJ_T0047465.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35323184 35325207 + Col11a2 protein_coding processed_transcript MGP_C57BL6NJ_T0047466.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35325958 35327322 + Col11a2 protein_coding retained_intron MGP_C57BL6NJ_T0047467.1 MGP_C57BL6NJ_G0023962.1 mouse_genomes_project 17 35333297 35335670 + Col11a2 protein_coding retained_intron MGP_C57BL6NJ_T0100107.1 MGP_C57BL6NJ_G0038153.1 mouse_genomes_project 17 101480896 101481005 - Gm22593 snRNA snRNA MGP_C57BL6NJ_T0102913.1 MGP_C57BL6NJ_G0040707.1 mouse_genomes_project 17 20616762 20617227 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010427.1 MGP_C57BL6NJ_G0008512.1 mouse_genomes_project 17 37596612 37596693 + Mir1894 miRNA miRNA MGP_C57BL6NJ_T0012081.1 MGP_C57BL6NJ_G0010155.1 mouse_genomes_project 17 37749700 37763244 - polymorphic_pseudogene retained_intron MGP_C57BL6NJ_T0012082.1 MGP_C57BL6NJ_G0010155.1 mouse_genomes_project 17 37751088 37763274 - MGP_C57BL6NJ_P0012082 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0047406.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154479 35185644 - Rps18 protein_coding retained_intron MGP_C57BL6NJ_T0047407.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154479 35188177 - Rps18 protein_coding processed_transcript MGP_C57BL6NJ_T0047408.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154479 35188628 - MGP_C57BL6NJ_P0047408 Rps18 protein_coding protein_coding MGP_C57BL6NJ_T0047409.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154479 35188682 - MGP_C57BL6NJ_P0047409 Rps18 protein_coding protein_coding MGP_C57BL6NJ_T0047410.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154480 35188625 - Rps18 protein_coding retained_intron MGP_C57BL6NJ_T0047411.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154480 35187455 - Rps18 protein_coding processed_transcript MGP_C57BL6NJ_T0047412.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35154484 35185496 - Rps18 protein_coding retained_intron MGP_C57BL6NJ_T0047413.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35184263 35188618 - Rps18 protein_coding retained_intron MGP_C57BL6NJ_T0047414.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35187789 35188625 - Rps18 protein_coding retained_intron MGP_C57BL6NJ_T0047415.1 MGP_C57BL6NJ_G0023954.1 mouse_genomes_project 17 35188483 35188966 - Rps18 protein_coding processed_transcript MGP_C57BL6NJ_T0003904.1 MGP_C57BL6NJ_G0003502.1 mouse_genomes_project 17 36449078 36453968 - Gm10501 antisense antisense MGP_C57BL6NJ_T0102894.1 MGP_C57BL6NJ_G0040688.1 mouse_genomes_project 17 17404308 17405588 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045891.1 MGP_C57BL6NJ_G0023533.1 mouse_genomes_project 17 4690359 4834403 + MGP_C57BL6NJ_P0045891 Rps6ka2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048711.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60520391 60523943 - MGP_C57BL6NJ_P0048711 protein_coding protein_coding MGP_C57BL6NJ_T0048712.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60520399 60523994 - MGP_C57BL6NJ_P0048712 protein_coding protein_coding MGP_C57BL6NJ_T0048713.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60522365 60526442 - MGP_C57BL6NJ_P0048713 protein_coding protein_coding MGP_C57BL6NJ_T0048714.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60522365 60545851 - MGP_C57BL6NJ_P0048714 protein_coding protein_coding MGP_C57BL6NJ_T0048715.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60522365 60545778 - MGP_C57BL6NJ_P0048715 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048716.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60522375 60531927 - protein_coding processed_transcript MGP_C57BL6NJ_T0048717.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60522731 60526445 - MGP_C57BL6NJ_P0048717 protein_coding protein_coding MGP_C57BL6NJ_T0048718.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60525423 60530867 - MGP_C57BL6NJ_P0048718 protein_coding protein_coding MGP_C57BL6NJ_T0048719.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60526959 60528863 - protein_coding retained_intron MGP_C57BL6NJ_T0048720.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60528323 60536111 - protein_coding retained_intron MGP_C57BL6NJ_T0048721.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60528419 60545790 - MGP_C57BL6NJ_P0048721 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048722.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60529509 60536533 - protein_coding retained_intron MGP_C57BL6NJ_T0048723.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60530454 60531106 - protein_coding retained_intron MGP_C57BL6NJ_T0048724.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60530568 60545710 - MGP_C57BL6NJ_P0048724 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048725.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60530696 60545828 - MGP_C57BL6NJ_P0048725 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048726.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60537598 60544312 - protein_coding retained_intron MGP_C57BL6NJ_T0048727.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60537727 60545567 - protein_coding retained_intron MGP_C57BL6NJ_T0048728.1 MGP_C57BL6NJ_G0024333.1 mouse_genomes_project 17 60540140 60545777 - protein_coding retained_intron MGP_C57BL6NJ_T0007134.1 MGP_C57BL6NJ_G0005870.1 mouse_genomes_project 17 55752699 55766238 + Gm19585 lincRNA lincRNA MGP_C57BL6NJ_T0007135.1 MGP_C57BL6NJ_G0005870.1 mouse_genomes_project 17 55763332 55766034 + Gm19585 lincRNA lincRNA MGP_C57BL6NJ_T0003879.1 MGP_C57BL6NJ_G0003484.1 mouse_genomes_project 17 26790772 26800808 - 1700049J03Rik antisense antisense MGP_C57BL6NJ_T0046648.1 MGP_C57BL6NJ_G0023780.1 mouse_genomes_project 17 25984854 25992196 - MGP_C57BL6NJ_P0046648 Gm20683 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047293.1 MGP_C57BL6NJ_G0023930.1 mouse_genomes_project 17 34305034 34312371 + MGP_C57BL6NJ_P0047293 protein_coding protein_coding MGP_C57BL6NJ_T0047111.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30531732 30594266 - MGP_C57BL6NJ_P0047111 Mdga1 protein_coding protein_coding MGP_C57BL6NJ_T0047112.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30531734 30593519 - MGP_C57BL6NJ_P0047112 Mdga1 protein_coding protein_coding MGP_C57BL6NJ_T0047113.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30535820 30546186 - Mdga1 protein_coding retained_intron MGP_C57BL6NJ_T0047114.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30536030 30539123 - Mdga1 protein_coding processed_transcript MGP_C57BL6NJ_T0047115.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30536047 30543675 - MGP_C57BL6NJ_P0047115 Mdga1 protein_coding protein_coding MGP_C57BL6NJ_T0047116.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30545883 30681934 - MGP_C57BL6NJ_P0047116 Mdga1 protein_coding protein_coding MGP_C57BL6NJ_T0047117.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30553449 30593119 - MGP_C57BL6NJ_P0047117 Mdga1 protein_coding protein_coding MGP_C57BL6NJ_T0047118.1 MGP_C57BL6NJ_G0023878.1 mouse_genomes_project 17 30554328 30595571 - Mdga1 protein_coding processed_transcript MGP_C57BL6NJ_T0048640.1 MGP_C57BL6NJ_G0024298.1 mouse_genomes_project 17 57724650 57756276 - MGP_C57BL6NJ_P0048640 Sult1c1 protein_coding protein_coding MGP_C57BL6NJ_T0048419.1 MGP_C57BL6NJ_G0024233.1 mouse_genomes_project 17 49812955 49840887 - MGP_C57BL6NJ_P0048419 Ppp2r5d protein_coding protein_coding MGP_C57BL6NJ_T0102943.1 MGP_C57BL6NJ_G0040737.1 mouse_genomes_project 17 37875525 37879013 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047506.1 MGP_C57BL6NJ_G0023972.1 mouse_genomes_project 17 35528839 35535828 + MGP_C57BL6NJ_P0047506 H2-Ob protein_coding protein_coding MGP_C57BL6NJ_T0047507.1 MGP_C57BL6NJ_G0023972.1 mouse_genomes_project 17 35528841 35531425 + H2-Ob protein_coding retained_intron MGP_C57BL6NJ_T0047508.1 MGP_C57BL6NJ_G0023972.1 mouse_genomes_project 17 35528867 35535719 + MGP_C57BL6NJ_P0047508 H2-Ob protein_coding protein_coding MGP_C57BL6NJ_T0047509.1 MGP_C57BL6NJ_G0023972.1 mouse_genomes_project 17 35529956 35534381 + MGP_C57BL6NJ_P0047509 H2-Ob protein_coding protein_coding MGP_C57BL6NJ_T0048292.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48699704 48738594 - MGP_C57BL6NJ_P0048292 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048293.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48702542 48704732 - Tmem63b protein_coding retained_intron MGP_C57BL6NJ_T0048294.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48703636 48707801 - Tmem63b protein_coding retained_intron MGP_C57BL6NJ_T0048295.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48709060 48738308 - MGP_C57BL6NJ_P0048295 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048296.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48711354 48739240 - MGP_C57BL6NJ_P0048296 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048297.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48717010 48732967 - MGP_C57BL6NJ_P0048297 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048298.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48717240 48738472 - MGP_C57BL6NJ_P0048298 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048299.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48731306 48738455 - MGP_C57BL6NJ_P0048299 Tmem63b protein_coding protein_coding MGP_C57BL6NJ_T0048300.1 MGP_C57BL6NJ_G0024202.1 mouse_genomes_project 17 48738558 48739222 - Tmem63b protein_coding processed_transcript MGP_C57BL6NJ_T0048817.1 MGP_C57BL6NJ_G0024377.1 mouse_genomes_project 17 68484362 68783269 + MGP_C57BL6NJ_P0048817 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048818.1 MGP_C57BL6NJ_G0024377.1 mouse_genomes_project 17 68563034 68783746 + MGP_C57BL6NJ_P0048818 protein_coding protein_coding MGP_C57BL6NJ_T0048985.1 MGP_C57BL6NJ_G0024421.1 mouse_genomes_project 17 78098130 78113663 + MGP_C57BL6NJ_P0048985 Ypel5 protein_coding protein_coding MGP_C57BL6NJ_T0047860.1 MGP_C57BL6NJ_G0024050.1 mouse_genomes_project 17 37282955 37293673 - MGP_C57BL6NJ_P0047860 Dpcr1 protein_coding protein_coding MGP_C57BL6NJ_T0046361.1 MGP_C57BL6NJ_G0023707.1 mouse_genomes_project 17 24451822 24467373 + MGP_C57BL6NJ_P0046361 Eci1 protein_coding protein_coding MGP_C57BL6NJ_T0046455.1 MGP_C57BL6NJ_G0023734.1 mouse_genomes_project 17 24967079 24970318 + MGP_C57BL6NJ_P0046455 Igfals protein_coding protein_coding MGP_C57BL6NJ_T0048432.1 MGP_C57BL6NJ_G0024238.1 mouse_genomes_project 17 49914403 49915176 + MGP_C57BL6NJ_P0048432 2310039H08Rik protein_coding protein_coding MGP_C57BL6NJ_T0101375.1 MGP_C57BL6NJ_G0039421.1 mouse_genomes_project 17 36749545 36749622 + Gm22589 snoRNA snoRNA MGP_C57BL6NJ_T0048110.1 MGP_C57BL6NJ_G0024105.1 mouse_genomes_project 17 39225947 39226998 + MGP_C57BL6NJ_P0048110 Olfr96 protein_coding protein_coding MGP_C57BL6NJ_T0046120.1 MGP_C57BL6NJ_G0023598.1 mouse_genomes_project 17 16854913 16855885 + MGP_C57BL6NJ_P0046120 Fpr-rs4 protein_coding protein_coding MGP_C57BL6NJ_T0047121.1 MGP_C57BL6NJ_G0023880.1 mouse_genomes_project 17 30947878 31327855 - MGP_C57BL6NJ_P0047121 Btbd9 protein_coding protein_coding MGP_C57BL6NJ_T0047122.1 MGP_C57BL6NJ_G0023880.1 mouse_genomes_project 17 30947878 31327855 - MGP_C57BL6NJ_P0047122 Btbd9 protein_coding protein_coding MGP_C57BL6NJ_T0048434.1 MGP_C57BL6NJ_G0024240.1 mouse_genomes_project 17 49943364 49979984 - MGP_C57BL6NJ_P0048434 Gltscr1l protein_coding protein_coding MGP_C57BL6NJ_T0013603.1 MGP_C57BL6NJ_G0011648.1 mouse_genomes_project 17 60280250 60281837 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048180.1 MGP_C57BL6NJ_G0024163.1 mouse_genomes_project 17 43404381 43409044 + MGP_C57BL6NJ_P0048180 Esp1 protein_coding protein_coding MGP_C57BL6NJ_T0102942.1 MGP_C57BL6NJ_G0040736.1 mouse_genomes_project 17 37875518 37878736 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0099043.1 MGP_C57BL6NJ_G0037107.1 mouse_genomes_project 17 67667128 67667239 - Gm25348 rRNA rRNA MGP_C57BL6NJ_T0048585.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52900032 52911973 + MGP_C57BL6NJ_P0048585 Mocs1 protein_coding protein_coding MGP_C57BL6NJ_T0048586.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52900034 52924354 + MGP_C57BL6NJ_P0048586 Mocs1 protein_coding protein_coding MGP_C57BL6NJ_T0048587.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52900080 52924357 + MGP_C57BL6NJ_P0048587 Mocs1 protein_coding protein_coding MGP_C57BL6NJ_T0048588.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52900112 52923712 + MGP_C57BL6NJ_P0048588 Mocs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048589.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52900112 52923712 + MGP_C57BL6NJ_P0048589 Mocs1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048590.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52904866 52907203 + Mocs1 protein_coding processed_transcript MGP_C57BL6NJ_T0048591.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52916558 52923190 + MGP_C57BL6NJ_P0048591 Mocs1 protein_coding protein_coding MGP_C57BL6NJ_T0048592.1 MGP_C57BL6NJ_G0024282.1 mouse_genomes_project 17 52919003 52924357 + MGP_C57BL6NJ_P0048592 Mocs1 protein_coding protein_coding MGP_C57BL6NJ_T0048108.1 MGP_C57BL6NJ_G0024103.1 mouse_genomes_project 17 39188698 39190003 - MGP_C57BL6NJ_P0048108 Olfr94 protein_coding protein_coding MGP_C57BL6NJ_T0048254.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48598767 48604264 - MGP_C57BL6NJ_P0048254 Hsp90ab1 protein_coding protein_coding MGP_C57BL6NJ_T0048255.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48599850 48600729 - Hsp90ab1 protein_coding retained_intron MGP_C57BL6NJ_T0048256.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48600010 48604246 - MGP_C57BL6NJ_P0048256 Hsp90ab1 protein_coding protein_coding MGP_C57BL6NJ_T0048257.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48600570 48604248 - MGP_C57BL6NJ_P0048257 Hsp90ab1 protein_coding protein_coding MGP_C57BL6NJ_T0048258.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48601437 48602575 - Hsp90ab1 protein_coding retained_intron MGP_C57BL6NJ_T0048259.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48601655 48604248 - MGP_C57BL6NJ_P0048259 Hsp90ab1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048260.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48602010 48604264 - Hsp90ab1 protein_coding retained_intron MGP_C57BL6NJ_T0048261.1 MGP_C57BL6NJ_G0024198.1 mouse_genomes_project 17 48602530 48603548 - MGP_C57BL6NJ_P0048261 Hsp90ab1 protein_coding protein_coding MGP_C57BL6NJ_T0101374.1 MGP_C57BL6NJ_G0039420.1 mouse_genomes_project 17 36648970 36649104 - Gm23442 snoRNA snoRNA MGP_C57BL6NJ_T0049120.1 MGP_C57BL6NJ_G0024478.1 mouse_genomes_project 17 89693251 89706122 - MGP_C57BL6NJ_P0049120 Cox7a2l protein_coding protein_coding MGP_C57BL6NJ_T0049121.1 MGP_C57BL6NJ_G0024478.1 mouse_genomes_project 17 89693251 89706122 - MGP_C57BL6NJ_P0049121 Cox7a2l protein_coding protein_coding MGP_C57BL6NJ_T0048994.1 MGP_C57BL6NJ_G0024425.1 mouse_genomes_project 17 78807607 79040194 - MGP_C57BL6NJ_P0048994 Galnt14 protein_coding protein_coding MGP_C57BL6NJ_T0048995.1 MGP_C57BL6NJ_G0024425.1 mouse_genomes_project 17 78821955 79040158 - MGP_C57BL6NJ_P0048995 Galnt14 protein_coding protein_coding MGP_C57BL6NJ_T0048996.1 MGP_C57BL6NJ_G0024425.1 mouse_genomes_project 17 78894305 79040196 - Galnt14 protein_coding retained_intron MGP_C57BL6NJ_T0048159.1 MGP_C57BL6NJ_G0024143.1 mouse_genomes_project 17 40404193 40405133 - MGP_C57BL6NJ_P0048159 Olfr137 protein_coding protein_coding MGP_C57BL6NJ_T0048657.1 MGP_C57BL6NJ_G0024310.1 mouse_genomes_project 17 59890588 59901978 + MGP_C57BL6NJ_P0048657 Fsd1 protein_coding protein_coding MGP_C57BL6NJ_T0003873.1 MGP_C57BL6NJ_G0003479.1 mouse_genomes_project 17 12050216 12051179 - Gm16049 antisense antisense MGP_C57BL6NJ_T0047595.1 MGP_C57BL6NJ_G0023991.1 mouse_genomes_project 17 36052062 36053623 + MGP_C57BL6NJ_P0047595 Fkbpl protein_coding protein_coding MGP_C57BL6NJ_T0047596.1 MGP_C57BL6NJ_G0023991.1 mouse_genomes_project 17 36052139 36052621 + MGP_C57BL6NJ_P0047596 Fkbpl protein_coding protein_coding MGP_C57BL6NJ_T0046285.1 MGP_C57BL6NJ_G0023684.1 mouse_genomes_project 17 23756338 23769040 + Prss32 protein_coding processed_transcript MGP_C57BL6NJ_T0046286.1 MGP_C57BL6NJ_G0023684.1 mouse_genomes_project 17 23768119 23774362 + MGP_C57BL6NJ_P0046286 Prss32 protein_coding protein_coding MGP_C57BL6NJ_T0046287.1 MGP_C57BL6NJ_G0023684.1 mouse_genomes_project 17 23768362 23773922 + MGP_C57BL6NJ_P0046287 Prss32 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007155.1 MGP_C57BL6NJ_G0005885.1 mouse_genomes_project 17 91275310 91278053 - 1110020A21Rik lincRNA lincRNA MGP_C57BL6NJ_T0046206.1 MGP_C57BL6NJ_G0023656.1 mouse_genomes_project 17 22280083 22300607 + MGP_C57BL6NJ_P0046206 protein_coding protein_coding MGP_C57BL6NJ_T0048404.1 MGP_C57BL6NJ_G0024228.1 mouse_genomes_project 17 49773563 49774988 + Mrpl2 protein_coding processed_transcript MGP_C57BL6NJ_T0048405.1 MGP_C57BL6NJ_G0024228.1 mouse_genomes_project 17 49773590 49777460 + MGP_C57BL6NJ_P0048405 Mrpl2 protein_coding protein_coding MGP_C57BL6NJ_T0048406.1 MGP_C57BL6NJ_G0024228.1 mouse_genomes_project 17 49773623 49777459 + MGP_C57BL6NJ_P0048406 Mrpl2 protein_coding protein_coding MGP_C57BL6NJ_T0048407.1 MGP_C57BL6NJ_G0024228.1 mouse_genomes_project 17 49776332 49777319 + Mrpl2 protein_coding processed_transcript MGP_C57BL6NJ_T0048193.1 MGP_C57BL6NJ_G0024171.1 mouse_genomes_project 17 45285097 45345460 - MGP_C57BL6NJ_P0048193 Opn5 protein_coding protein_coding MGP_C57BL6NJ_T0047295.1 MGP_C57BL6NJ_G0023932.1 mouse_genomes_project 17 34389766 34390721 + MGP_C57BL6NJ_P0047295 Olfr63 protein_coding protein_coding MGP_C57BL6NJ_T0048167.1 MGP_C57BL6NJ_G0024150.1 mouse_genomes_project 17 41306639 41309986 - MGP_C57BL6NJ_P0048167 Esp23 protein_coding protein_coding MGP_C57BL6NJ_T0048538.1 MGP_C57BL6NJ_G0024267.1 mouse_genomes_project 17 51388494 51389779 + MGP_C57BL6NJ_P0048538 1700067P10Rik protein_coding protein_coding MGP_C57BL6NJ_T0046007.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11050764 11077687 - MGP_C57BL6NJ_P0046007 protein_coding protein_coding MGP_C57BL6NJ_T0046008.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11050767 11077449 - MGP_C57BL6NJ_P0046008 protein_coding protein_coding MGP_C57BL6NJ_T0046009.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11056651 11077382 - MGP_C57BL6NJ_P0046009 protein_coding protein_coding MGP_C57BL6NJ_T0046010.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11057518 11077736 - MGP_C57BL6NJ_P0046010 protein_coding protein_coding MGP_C57BL6NJ_T0046011.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11058963 11068737 - MGP_C57BL6NJ_P0046011 protein_coding protein_coding MGP_C57BL6NJ_T0046012.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11066256 11071505 - MGP_C57BL6NJ_P0046012 protein_coding protein_coding MGP_C57BL6NJ_T0046013.1 MGP_C57BL6NJ_G0023567.1 mouse_genomes_project 17 11067041 11069236 - protein_coding processed_transcript MGP_C57BL6NJ_T0013527.1 MGP_C57BL6NJ_G0011572.1 mouse_genomes_project 17 9517816 9518110 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011686.1 MGP_C57BL6NJ_G0009771.1 mouse_genomes_project 17 38059334 38059652 - Gm22453 misc_RNA misc_RNA MGP_C57BL6NJ_T0047193.1 MGP_C57BL6NJ_G0023899.1 mouse_genomes_project 17 32561651 32565440 + MGP_C57BL6NJ_P0047193 Cryaa protein_coding protein_coding MGP_C57BL6NJ_T0046457.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24974952 24980459 + MGP_C57BL6NJ_P0046457 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046458.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24974983 24980457 + MGP_C57BL6NJ_P0046458 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046459.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24974989 24980459 + MGP_C57BL6NJ_P0046459 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046460.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24974989 24980459 + MGP_C57BL6NJ_P0046460 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046461.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24975011 24978906 + MGP_C57BL6NJ_P0046461 Spsb3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046462.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24975046 24980447 + MGP_C57BL6NJ_P0046462 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046463.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24975068 24980462 + Spsb3 protein_coding retained_intron MGP_C57BL6NJ_T0046464.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24975474 24980459 + MGP_C57BL6NJ_P0046464 Spsb3 protein_coding protein_coding MGP_C57BL6NJ_T0046465.1 MGP_C57BL6NJ_G0023736.1 mouse_genomes_project 17 24976173 24978750 + MGP_C57BL6NJ_P0046465 Spsb3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048529.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51147470 51208710 - MGP_C57BL6NJ_P0048529 Foxp4 protein_coding protein_coding MGP_C57BL6NJ_T0048530.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51148101 51208500 - MGP_C57BL6NJ_P0048530 Foxp4 protein_coding protein_coding MGP_C57BL6NJ_T0048531.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51148101 51208465 - MGP_C57BL6NJ_P0048531 Foxp4 protein_coding protein_coding MGP_C57BL6NJ_T0048532.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51148105 51208541 - MGP_C57BL6NJ_P0048532 Foxp4 protein_coding protein_coding MGP_C57BL6NJ_T0048533.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51158583 51168730 - Foxp4 protein_coding processed_transcript MGP_C57BL6NJ_T0048534.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51158778 51159252 - Foxp4 protein_coding retained_intron MGP_C57BL6NJ_T0048535.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51160638 51168447 - Foxp4 protein_coding retained_intron MGP_C57BL6NJ_T0048536.1 MGP_C57BL6NJ_G0024265.1 mouse_genomes_project 17 51168189 51208491 - Foxp4 protein_coding retained_intron MGP_C57BL6NJ_T0047857.1 MGP_C57BL6NJ_G0024048.1 mouse_genomes_project 17 37245466 37300545 + MGP_C57BL6NJ_P0047857 Sfta2 protein_coding protein_coding MGP_C57BL6NJ_T0047858.1 MGP_C57BL6NJ_G0024048.1 mouse_genomes_project 17 37245495 37300543 + Sfta2 protein_coding processed_transcript MGP_C57BL6NJ_T0047861.1 MGP_C57BL6NJ_G0024048.1 mouse_genomes_project 17 37299685 37300549 + MGP_C57BL6NJ_P0047861 Sfta2 protein_coding protein_coding MGP_C57BL6NJ_T0046957.1 MGP_C57BL6NJ_G0023844.1 mouse_genomes_project 17 28840532 28852103 - Tead3 protein_coding retained_intron MGP_C57BL6NJ_T0046958.1 MGP_C57BL6NJ_G0023844.1 mouse_genomes_project 17 28841549 28853963 - MGP_C57BL6NJ_P0046958 Tead3 protein_coding protein_coding MGP_C57BL6NJ_T0046959.1 MGP_C57BL6NJ_G0023844.1 mouse_genomes_project 17 28842335 28844219 - Tead3 protein_coding retained_intron MGP_C57BL6NJ_T0046960.1 MGP_C57BL6NJ_G0023844.1 mouse_genomes_project 17 28842752 28845148 - Tead3 protein_coding processed_transcript MGP_C57BL6NJ_T0047517.1 MGP_C57BL6NJ_G0023975.1 mouse_genomes_project 17 35598910 35610672 + MGP_C57BL6NJ_P0047517 H2-Eb1 protein_coding protein_coding MGP_C57BL6NJ_T0046686.1 MGP_C57BL6NJ_G0023786.1 mouse_genomes_project 17 26032911 26035587 - MGP_C57BL6NJ_P0046686 Wfikkn1 protein_coding protein_coding MGP_C57BL6NJ_T0046687.1 MGP_C57BL6NJ_G0023786.1 mouse_genomes_project 17 26034085 26035518 - MGP_C57BL6NJ_P0046687 Wfikkn1 protein_coding protein_coding MGP_C57BL6NJ_T0046138.1 MGP_C57BL6NJ_G0023616.1 mouse_genomes_project 17 19653239 19654136 + MGP_C57BL6NJ_P0046138 Vmn1r224 protein_coding protein_coding MGP_C57BL6NJ_T0099046.1 MGP_C57BL6NJ_G0037110.1 mouse_genomes_project 17 84677833 84677952 + n-R5s29 rRNA rRNA MGP_C57BL6NJ_T0049266.1 MGP_C57BL6NJ_G0024523.1 mouse_genomes_project 17 100239828 100245892 + MGP_C57BL6NJ_P0049266 Adcyap1 protein_coding protein_coding MGP_C57BL6NJ_T0010393.1 MGP_C57BL6NJ_G0008478.1 mouse_genomes_project 17 23975713 23975794 + Gm27700 miRNA miRNA MGP_C57BL6NJ_T0013543.1 MGP_C57BL6NJ_G0011588.1 mouse_genomes_project 17 27932901 27933170 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047135.1 MGP_C57BL6NJ_G0023888.1 mouse_genomes_project 17 31967972 31971630 - MGP_C57BL6NJ_P0047135 Tff1 protein_coding protein_coding MGP_C57BL6NJ_T0046139.1 MGP_C57BL6NJ_G0023617.1 mouse_genomes_project 17 19702586 19722238 - MGP_C57BL6NJ_P0046139 Vmn2r108 protein_coding protein_coding MGP_C57BL6NJ_T0047920.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37533289 37547883 + MGP_C57BL6NJ_P0047920 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047921.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37533321 37547784 + MGP_C57BL6NJ_P0047921 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047922.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37533752 37547888 + MGP_C57BL6NJ_P0047922 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047923.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37534311 37547889 + MGP_C57BL6NJ_P0047923 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047924.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37534356 37547879 + MGP_C57BL6NJ_P0047924 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047925.1 MGP_C57BL6NJ_G0024059.1 mouse_genomes_project 17 37536099 37547886 + MGP_C57BL6NJ_P0047925 Ppp1r18 protein_coding protein_coding MGP_C57BL6NJ_T0047500.1 MGP_C57BL6NJ_G0023970.1 mouse_genomes_project 17 35500068 35514288 + MGP_C57BL6NJ_P0047500 Tap2 protein_coding protein_coding MGP_C57BL6NJ_T0047501.1 MGP_C57BL6NJ_G0023970.1 mouse_genomes_project 17 35500621 35501910 + MGP_C57BL6NJ_P0047501 Tap2 protein_coding protein_coding MGP_C57BL6NJ_T0047502.1 MGP_C57BL6NJ_G0023970.1 mouse_genomes_project 17 35501108 35514285 + Tap2 protein_coding retained_intron MGP_C57BL6NJ_T0047503.1 MGP_C57BL6NJ_G0023970.1 mouse_genomes_project 17 35501641 35502109 + MGP_C57BL6NJ_P0047503 Tap2 protein_coding protein_coding MGP_C57BL6NJ_T0047504.1 MGP_C57BL6NJ_G0023970.1 mouse_genomes_project 17 35505668 35507187 + Tap2 protein_coding processed_transcript MGP_C57BL6NJ_T0013620.1 MGP_C57BL6NJ_G0011665.1 mouse_genomes_project 17 84879500 84880477 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048203.1 MGP_C57BL6NJ_G0024178.1 mouse_genomes_project 17 46247596 46317322 + MGP_C57BL6NJ_P0048203 Adgrf5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048204.1 MGP_C57BL6NJ_G0024178.1 mouse_genomes_project 17 46247638 46321544 + MGP_C57BL6NJ_P0048204 Adgrf5 protein_coding protein_coding MGP_C57BL6NJ_T0046289.1 MGP_C57BL6NJ_G0023686.1 mouse_genomes_project 17 23839636 23841334 + MGP_C57BL6NJ_P0046289 protein_coding protein_coding MGP_C57BL6NJ_T0100087.1 MGP_C57BL6NJ_G0038133.1 mouse_genomes_project 17 51121422 51121592 - Gm25201 snRNA snRNA MGP_C57BL6NJ_T0047820.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36748613 36762353 + MGP_C57BL6NJ_P0047820 Ddx39b protein_coding protein_coding MGP_C57BL6NJ_T0047821.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36748645 36757718 + MGP_C57BL6NJ_P0047821 Ddx39b protein_coding protein_coding MGP_C57BL6NJ_T0047822.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36748672 36758563 + Ddx39b protein_coding retained_intron MGP_C57BL6NJ_T0047823.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36748737 36762326 + MGP_C57BL6NJ_P0047823 Ddx39b protein_coding protein_coding MGP_C57BL6NJ_T0047824.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36748863 36750092 + Ddx39b protein_coding processed_transcript MGP_C57BL6NJ_T0047825.1 MGP_C57BL6NJ_G0024038.1 mouse_genomes_project 17 36749534 36762322 + MGP_C57BL6NJ_P0047825 Ddx39b protein_coding protein_coding MGP_C57BL6NJ_T0047837.1 MGP_C57BL6NJ_G0024042.1 mouse_genomes_project 17 37138147 37142117 + MGP_C57BL6NJ_P0047837 protein_coding protein_coding MGP_C57BL6NJ_T0047838.1 MGP_C57BL6NJ_G0024042.1 mouse_genomes_project 17 37140787 37142117 + MGP_C57BL6NJ_P0047838 protein_coding protein_coding MGP_C57BL6NJ_T0047839.1 MGP_C57BL6NJ_G0024042.1 mouse_genomes_project 17 37140789 37142117 + MGP_C57BL6NJ_P0047839 protein_coding protein_coding MGP_C57BL6NJ_T0047840.1 MGP_C57BL6NJ_G0024042.1 mouse_genomes_project 17 37140799 37142117 + MGP_C57BL6NJ_P0047840 protein_coding protein_coding MGP_C57BL6NJ_T0047841.1 MGP_C57BL6NJ_G0024042.1 mouse_genomes_project 17 37140803 37142117 + MGP_C57BL6NJ_P0047841 protein_coding protein_coding MGP_C57BL6NJ_T0013594.1 MGP_C57BL6NJ_G0011639.1 mouse_genomes_project 17 57419492 57420145 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101366.1 MGP_C57BL6NJ_G0039412.1 mouse_genomes_project 17 23991020 23991149 - Gm25092 snoRNA snoRNA MGP_C57BL6NJ_T0048999.1 MGP_C57BL6NJ_G0024428.1 mouse_genomes_project 17 79383527 79415780 - MGP_C57BL6NJ_P0048999 Srd5a2 protein_coding protein_coding MGP_C57BL6NJ_T0102966.1 MGP_C57BL6NJ_G0040760.1 mouse_genomes_project 17 39087211 39088095 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101367.1 MGP_C57BL6NJ_G0039413.1 mouse_genomes_project 17 24571070 24571148 + Snord60 snoRNA snoRNA MGP_C57BL6NJ_T0045949.1 MGP_C57BL6NJ_G0023550.1 mouse_genomes_project 17 7528424 7531632 - MGP_C57BL6NJ_P0045949 Pabpc6 protein_coding protein_coding MGP_C57BL6NJ_T0046044.1 MGP_C57BL6NJ_G0023577.1 mouse_genomes_project 17 13356714 13371231 - MGP_C57BL6NJ_P0046044 Phf10 protein_coding protein_coding MGP_C57BL6NJ_T0046045.1 MGP_C57BL6NJ_G0023577.1 mouse_genomes_project 17 13356719 13358534 - Phf10 protein_coding retained_intron MGP_C57BL6NJ_T0046046.1 MGP_C57BL6NJ_G0023577.1 mouse_genomes_project 17 13358271 13364412 - Phf10 protein_coding retained_intron MGP_C57BL6NJ_T0046047.1 MGP_C57BL6NJ_G0023577.1 mouse_genomes_project 17 13359443 13371231 - MGP_C57BL6NJ_P0046047 Phf10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046048.1 MGP_C57BL6NJ_G0023577.1 mouse_genomes_project 17 13367416 13371233 - Phf10 protein_coding retained_intron MGP_C57BL6NJ_T0048113.1 MGP_C57BL6NJ_G0024108.1 mouse_genomes_project 17 39286749 39291014 + MGP_C57BL6NJ_P0048113 H2-M3 protein_coding protein_coding MGP_C57BL6NJ_T0013548.1 MGP_C57BL6NJ_G0011593.1 mouse_genomes_project 17 35344638 35347039 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048452.1 MGP_C57BL6NJ_G0024247.1 mouse_genomes_project 17 50593409 50600968 + MGP_C57BL6NJ_P0048452 Guca1b protein_coding protein_coding MGP_C57BL6NJ_T0048453.1 MGP_C57BL6NJ_G0024247.1 mouse_genomes_project 17 50593420 50600094 + MGP_C57BL6NJ_P0048453 Guca1b protein_coding protein_coding MGP_C57BL6NJ_T0048187.1 MGP_C57BL6NJ_G0024166.1 mouse_genomes_project 17 43543774 43548851 - MGP_C57BL6NJ_P0048187 9130008F23Rik protein_coding protein_coding MGP_C57BL6NJ_T0046468.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24980462 25025234 - MGP_C57BL6NJ_P0046468 Mapk8ip3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046483.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985815 25025273 - MGP_C57BL6NJ_P0046483 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046484.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985815 25025273 - MGP_C57BL6NJ_P0046484 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046485.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985842 25025208 - MGP_C57BL6NJ_P0046485 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046486.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985842 25025264 - MGP_C57BL6NJ_P0046486 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046487.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985842 25025263 - MGP_C57BL6NJ_P0046487 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046488.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985842 25025190 - MGP_C57BL6NJ_P0046488 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046489.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24985843 25025225 - MGP_C57BL6NJ_P0046489 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046490.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24986917 24988027 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046491.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24987108 25025256 - MGP_C57BL6NJ_P0046491 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046492.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24987257 25025264 - MGP_C57BL6NJ_P0046492 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046493.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24987973 24989396 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046494.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24988853 24990028 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046495.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24990127 24991391 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046496.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24990999 24991674 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046497.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24992838 24994097 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046498.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24993489 24995108 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046499.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24995144 25004877 - Mapk8ip3 protein_coding processed_transcript MGP_C57BL6NJ_T0046500.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 24995234 25012178 - MGP_C57BL6NJ_P0046500 Mapk8ip3 protein_coding protein_coding MGP_C57BL6NJ_T0046501.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 25003663 25012521 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0046502.1 MGP_C57BL6NJ_G0023738.1 mouse_genomes_project 17 25015415 25025241 - Mapk8ip3 protein_coding retained_intron MGP_C57BL6NJ_T0047334.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34843636 34881726 - MGP_C57BL6NJ_P0047334 March2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047335.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34843656 34881701 - MGP_C57BL6NJ_P0047335 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047336.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34843757 34881701 - MGP_C57BL6NJ_P0047336 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047337.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34851394 34881709 - MGP_C57BL6NJ_P0047337 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047338.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34851394 34881696 - MGP_C57BL6NJ_P0047338 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047339.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34851718 34863006 - MGP_C57BL6NJ_P0047339 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047340.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34854096 34881713 - MGP_C57BL6NJ_P0047340 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047341.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34855905 34881647 - MGP_C57BL6NJ_P0047341 March2 protein_coding protein_coding MGP_C57BL6NJ_T0047342.1 MGP_C57BL6NJ_G0023941.1 mouse_genomes_project 17 34862943 34876442 - MGP_C57BL6NJ_P0047342 March2 protein_coding protein_coding MGP_C57BL6NJ_T0046307.1 MGP_C57BL6NJ_G0023695.1 mouse_genomes_project 17 24033919 24065318 - MGP_C57BL6NJ_P0046307 Kctd5 protein_coding protein_coding MGP_C57BL6NJ_T0046308.1 MGP_C57BL6NJ_G0023695.1 mouse_genomes_project 17 24047834 24060120 - Kctd5 protein_coding processed_transcript MGP_C57BL6NJ_T0048209.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450081 46484046 + MGP_C57BL6NJ_P0048209 Pla2g7 protein_coding protein_coding MGP_C57BL6NJ_T0048210.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450252 46495660 + MGP_C57BL6NJ_P0048210 Pla2g7 protein_coding protein_coding MGP_C57BL6NJ_T0048211.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450458 46478372 + MGP_C57BL6NJ_P0048211 Pla2g7 protein_coding protein_coding MGP_C57BL6NJ_T0048212.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450618 46473253 + Pla2g7 protein_coding processed_transcript MGP_C57BL6NJ_T0048213.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450656 46490722 + MGP_C57BL6NJ_P0048213 Pla2g7 protein_coding protein_coding MGP_C57BL6NJ_T0048214.1 MGP_C57BL6NJ_G0024181.1 mouse_genomes_project 17 46450698 46491095 + Pla2g7 protein_coding retained_intron MGP_C57BL6NJ_T0048304.1 MGP_C57BL6NJ_G0024204.1 mouse_genomes_project 17 48793558 48794539 - MGP_C57BL6NJ_P0048304 1600014C23Rik protein_coding protein_coding MGP_C57BL6NJ_T0049159.1 MGP_C57BL6NJ_G0024494.1 mouse_genomes_project 17 92072458 92076414 - MGP_C57BL6NJ_P0049159 Six2 protein_coding protein_coding MGP_C57BL6NJ_T0049160.1 MGP_C57BL6NJ_G0024494.1 mouse_genomes_project 17 92072463 92076394 - MGP_C57BL6NJ_P0049160 Six2 protein_coding protein_coding MGP_C57BL6NJ_T0046527.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25235459 25268794 + MGP_C57BL6NJ_P0046527 Clcn7 protein_coding protein_coding MGP_C57BL6NJ_T0046528.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25235533 25251064 + Clcn7 protein_coding retained_intron MGP_C57BL6NJ_T0046529.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25239789 25268788 + MGP_C57BL6NJ_P0046529 Clcn7 protein_coding protein_coding MGP_C57BL6NJ_T0046530.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25250329 25255107 + MGP_C57BL6NJ_P0046530 Clcn7 protein_coding protein_coding MGP_C57BL6NJ_T0046531.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25250836 25256918 + Clcn7 protein_coding processed_transcript MGP_C57BL6NJ_T0046532.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25255694 25262423 + MGP_C57BL6NJ_P0046532 Clcn7 protein_coding protein_coding MGP_C57BL6NJ_T0046533.1 MGP_C57BL6NJ_G0023747.1 mouse_genomes_project 17 25265344 25266432 + Clcn7 protein_coding retained_intron MGP_C57BL6NJ_T0049122.1 MGP_C57BL6NJ_G0024479.1 mouse_genomes_project 17 89785783 89842709 - MGP_C57BL6NJ_P0049122 Kcng3 protein_coding protein_coding MGP_C57BL6NJ_T0047041.1 MGP_C57BL6NJ_G0023861.1 mouse_genomes_project 17 29663063 29672165 + Srsf3 protein_coding retained_intron MGP_C57BL6NJ_T0047042.1 MGP_C57BL6NJ_G0023861.1 mouse_genomes_project 17 29663063 29673288 + MGP_C57BL6NJ_P0047042 Srsf3 protein_coding protein_coding MGP_C57BL6NJ_T0047043.1 MGP_C57BL6NJ_G0023861.1 mouse_genomes_project 17 29666769 29670531 + Srsf3 protein_coding retained_intron MGP_C57BL6NJ_T0048884.1 MGP_C57BL6NJ_G0024398.1 mouse_genomes_project 17 72752441 72925955 - MGP_C57BL6NJ_P0048884 Arhgap28 protein_coding protein_coding MGP_C57BL6NJ_T0048885.1 MGP_C57BL6NJ_G0024398.1 mouse_genomes_project 17 72755463 72820936 - MGP_C57BL6NJ_P0048885 Arhgap28 protein_coding protein_coding MGP_C57BL6NJ_T0048886.1 MGP_C57BL6NJ_G0024398.1 mouse_genomes_project 17 72770510 72786014 - MGP_C57BL6NJ_P0048886 Arhgap28 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048887.1 MGP_C57BL6NJ_G0024398.1 mouse_genomes_project 17 72781934 72815581 - MGP_C57BL6NJ_P0048887 Arhgap28 protein_coding protein_coding MGP_C57BL6NJ_T0049171.1 MGP_C57BL6NJ_G0024500.1 mouse_genomes_project 17 93423099 93426929 - MGP_C57BL6NJ_P0049171 Atp6v1e2 protein_coding protein_coding MGP_C57BL6NJ_T0046450.1 MGP_C57BL6NJ_G0023733.1 mouse_genomes_project 17 24937894 24941479 + MGP_C57BL6NJ_P0046450 Hagh protein_coding protein_coding MGP_C57BL6NJ_T0046451.1 MGP_C57BL6NJ_G0023733.1 mouse_genomes_project 17 24937897 24952639 + MGP_C57BL6NJ_P0046451 Hagh protein_coding protein_coding MGP_C57BL6NJ_T0046452.1 MGP_C57BL6NJ_G0023733.1 mouse_genomes_project 17 24937911 24952642 + MGP_C57BL6NJ_P0046452 Hagh protein_coding protein_coding MGP_C57BL6NJ_T0046453.1 MGP_C57BL6NJ_G0023733.1 mouse_genomes_project 17 24937985 24948392 + MGP_C57BL6NJ_P0046453 Hagh protein_coding protein_coding MGP_C57BL6NJ_T0046454.1 MGP_C57BL6NJ_G0023733.1 mouse_genomes_project 17 24945545 24952796 + Hagh protein_coding processed_transcript MGP_C57BL6NJ_T0010416.1 MGP_C57BL6NJ_G0008501.1 mouse_genomes_project 17 35295900 35296010 - Mir219a-1 miRNA miRNA MGP_C57BL6NJ_T0048993.1 MGP_C57BL6NJ_G0024424.1 mouse_genomes_project 17 78601946 78701670 - MGP_C57BL6NJ_P0048993 Capn13 protein_coding protein_coding MGP_C57BL6NJ_T0011680.1 MGP_C57BL6NJ_G0009765.1 mouse_genomes_project 17 10828261 10828513 + Gm23833 misc_RNA misc_RNA MGP_C57BL6NJ_T0046572.1 MGP_C57BL6NJ_G0023760.1 mouse_genomes_project 17 25494082 25499252 + MGP_C57BL6NJ_P0046572 Tpsg1 protein_coding protein_coding MGP_C57BL6NJ_T0046573.1 MGP_C57BL6NJ_G0023760.1 mouse_genomes_project 17 25494098 25498961 + MGP_C57BL6NJ_P0046573 Tpsg1 protein_coding protein_coding MGP_C57BL6NJ_T0046574.1 MGP_C57BL6NJ_G0023760.1 mouse_genomes_project 17 25495364 25499252 + MGP_C57BL6NJ_P0046574 Tpsg1 protein_coding protein_coding MGP_C57BL6NJ_T0046575.1 MGP_C57BL6NJ_G0023760.1 mouse_genomes_project 17 25495395 25499254 + MGP_C57BL6NJ_P0046575 Tpsg1 protein_coding protein_coding MGP_C57BL6NJ_T0046576.1 MGP_C57BL6NJ_G0023760.1 mouse_genomes_project 17 25497820 25499197 + MGP_C57BL6NJ_P0046576 Tpsg1 protein_coding protein_coding MGP_C57BL6NJ_T0046417.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24758282 24762578 + MGP_C57BL6NJ_P0046417 Noxo1 protein_coding protein_coding MGP_C57BL6NJ_T0046419.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760073 24760406 + Noxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0046420.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760226 24761453 + Noxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0046421.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760283 24762574 + Noxo1 protein_coding retained_intron MGP_C57BL6NJ_T0046422.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760289 24762362 + Noxo1 protein_coding retained_intron MGP_C57BL6NJ_T0046423.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760362 24761217 + Noxo1 protein_coding retained_intron MGP_C57BL6NJ_T0046424.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760391 24761729 + Noxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0046425.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24760576 24762573 + Noxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0046426.1 MGP_C57BL6NJ_G0023723.1 mouse_genomes_project 17 24761443 24762565 + Noxo1 protein_coding processed_transcript MGP_C57BL6NJ_T0046538.1 MGP_C57BL6NJ_G0023749.1 mouse_genomes_project 17 25291581 25294682 + MGP_C57BL6NJ_P0046538 BC003965 protein_coding protein_coding MGP_C57BL6NJ_T0047146.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232426 32330757 + MGP_C57BL6NJ_P0047146 Pde9a protein_coding protein_coding MGP_C57BL6NJ_T0047147.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232441 32330603 + MGP_C57BL6NJ_P0047147 Pde9a protein_coding protein_coding MGP_C57BL6NJ_T0047148.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232441 32330603 + MGP_C57BL6NJ_P0047148 Pde9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047149.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232441 32330603 + MGP_C57BL6NJ_P0047149 Pde9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047150.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232446 32330606 + MGP_C57BL6NJ_P0047150 Pde9a protein_coding protein_coding MGP_C57BL6NJ_T0047151.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232454 32330528 + MGP_C57BL6NJ_P0047151 Pde9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047152.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232466 32330606 + MGP_C57BL6NJ_P0047152 Pde9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047153.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232468 32326408 + Pde9a protein_coding retained_intron MGP_C57BL6NJ_T0047154.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32232486 32309869 + MGP_C57BL6NJ_P0047154 Pde9a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047155.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32283182 32313876 + MGP_C57BL6NJ_P0047155 Pde9a protein_coding protein_coding MGP_C57BL6NJ_T0047156.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32294983 32314938 + Pde9a protein_coding retained_intron MGP_C57BL6NJ_T0047157.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32305404 32316447 + Pde9a protein_coding retained_intron MGP_C57BL6NJ_T0047158.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32316374 32330588 + MGP_C57BL6NJ_P0047158 Pde9a protein_coding protein_coding MGP_C57BL6NJ_T0047159.1 MGP_C57BL6NJ_G0023893.1 mouse_genomes_project 17 32325653 32330553 + Pde9a protein_coding processed_transcript MGP_C57BL6NJ_T0046980.1 MGP_C57BL6NJ_G0023848.1 mouse_genomes_project 17 29097925 29104979 + MGP_C57BL6NJ_P0046980 Clpsl2 protein_coding protein_coding MGP_C57BL6NJ_T0049136.1 MGP_C57BL6NJ_G0024484.1 mouse_genomes_project 17 90790453 90904660 + MGP_C57BL6NJ_P0049136 Plekhh2 protein_coding protein_coding MGP_C57BL6NJ_T0013567.1 MGP_C57BL6NJ_G0011612.1 mouse_genomes_project 17 38337381 38337954 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003901.1 MGP_C57BL6NJ_G0003499.1 mouse_genomes_project 17 35357938 35371346 - BC051537 antisense antisense MGP_C57BL6NJ_T0048646.1 MGP_C57BL6NJ_G0024301.1 mouse_genomes_project 17 59461302 59490582 - MGP_C57BL6NJ_P0048646 Vmn2r118 protein_coding protein_coding MGP_C57BL6NJ_T0048691.1 MGP_C57BL6NJ_G0024326.1 mouse_genomes_project 17 60214348 60224818 - MGP_C57BL6NJ_P0048691 Ticam1 protein_coding protein_coding MGP_C57BL6NJ_T0048091.1 MGP_C57BL6NJ_G0024097.1 mouse_genomes_project 17 38967722 38984614 - MGP_C57BL6NJ_P0048091 Mog protein_coding protein_coding MGP_C57BL6NJ_T0048092.1 MGP_C57BL6NJ_G0024097.1 mouse_genomes_project 17 38968480 38984415 - MGP_C57BL6NJ_P0048092 Mog protein_coding protein_coding MGP_C57BL6NJ_T0001113.1 MGP_C57BL6NJ_G0001020.1 mouse_genomes_project 17 18463045 18465886 + TEC TEC MGP_C57BL6NJ_T0047248.1 MGP_C57BL6NJ_G0023912.1 mouse_genomes_project 17 33435811 33466426 + MGP_C57BL6NJ_P0047248 Cyp4f17 protein_coding protein_coding MGP_C57BL6NJ_T0047249.1 MGP_C57BL6NJ_G0023912.1 mouse_genomes_project 17 33436244 33497312 + MGP_C57BL6NJ_P0047249 Cyp4f17 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102971.1 MGP_C57BL6NJ_G0040765.1 mouse_genomes_project 17 39397736 39398105 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046920.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28658841 28689423 + Zfp523 protein_coding retained_intron MGP_C57BL6NJ_T0046921.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28658973 28689423 + MGP_C57BL6NJ_P0046921 Zfp523 protein_coding protein_coding MGP_C57BL6NJ_T0046922.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28659052 28689421 + MGP_C57BL6NJ_P0046922 Zfp523 protein_coding protein_coding MGP_C57BL6NJ_T0046923.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28671568 28679436 + Zfp523 protein_coding processed_transcript MGP_C57BL6NJ_T0046924.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28679420 28686015 + MGP_C57BL6NJ_P0046924 Zfp523 protein_coding protein_coding MGP_C57BL6NJ_T0046925.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28685827 28688699 + MGP_C57BL6NJ_P0046925 Zfp523 protein_coding protein_coding MGP_C57BL6NJ_T0046926.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28686002 28689423 + MGP_C57BL6NJ_P0046926 Zfp523 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046927.1 MGP_C57BL6NJ_G0023839.1 mouse_genomes_project 17 28687645 28688844 + Zfp523 protein_coding retained_intron MGP_C57BL6NJ_T0048766.1 MGP_C57BL6NJ_G0024354.1 mouse_genomes_project 17 61032629 61044923 - MGP_C57BL6NJ_P0048766 Khsrp protein_coding protein_coding MGP_C57BL6NJ_T0046621.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25928850 25934548 - MGP_C57BL6NJ_P0046621 Haghl protein_coding protein_coding MGP_C57BL6NJ_T0046622.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25931797 25934343 - Haghl protein_coding retained_intron MGP_C57BL6NJ_T0046623.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25931809 25934540 - Haghl protein_coding retained_intron MGP_C57BL6NJ_T0046624.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25931821 25934573 - MGP_C57BL6NJ_P0046624 Haghl protein_coding protein_coding MGP_C57BL6NJ_T0046625.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25932547 25934575 - Haghl protein_coding retained_intron MGP_C57BL6NJ_T0046626.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25932836 25934574 - Haghl protein_coding retained_intron MGP_C57BL6NJ_T0046627.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25933140 25934313 - Haghl protein_coding retained_intron MGP_C57BL6NJ_T0046628.1 MGP_C57BL6NJ_G0023772.1 mouse_genomes_project 17 25933323 25934551 - MGP_C57BL6NJ_P0046628 Haghl protein_coding protein_coding MGP_C57BL6NJ_T0003936.1 MGP_C57BL6NJ_G0003527.1 mouse_genomes_project 17 74190002 74191849 - 2410021H03Rik antisense antisense MGP_C57BL6NJ_T0048957.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76484117 76496014 - Smchd1 protein_coding processed_transcript MGP_C57BL6NJ_T0048958.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76484117 76625773 - MGP_C57BL6NJ_P0048958 Smchd1 protein_coding protein_coding MGP_C57BL6NJ_T0048959.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76486022 76488519 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048960.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76488432 76501386 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048961.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76490389 76492904 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048962.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76496603 76500665 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048963.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76530232 76531479 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048964.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76533607 76534427 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048968.1 MGP_C57BL6NJ_G0024412.1 mouse_genomes_project 17 76622968 76625758 - Smchd1 protein_coding retained_intron MGP_C57BL6NJ_T0048998.1 MGP_C57BL6NJ_G0024427.1 mouse_genomes_project 17 79229187 79310432 - MGP_C57BL6NJ_P0048998 Xdh protein_coding protein_coding MGP_C57BL6NJ_T0048997.1 MGP_C57BL6NJ_G0024426.1 mouse_genomes_project 17 79140248 79168308 + MGP_C57BL6NJ_P0048997 Ehd3 protein_coding protein_coding MGP_C57BL6NJ_T0048553.1 MGP_C57BL6NJ_G0024274.1 mouse_genomes_project 17 51737232 51743105 + MGP_C57BL6NJ_P0048553 Trem2 protein_coding protein_coding MGP_C57BL6NJ_T0048554.1 MGP_C57BL6NJ_G0024274.1 mouse_genomes_project 17 51737271 51744979 + Trem2 protein_coding retained_intron MGP_C57BL6NJ_T0048555.1 MGP_C57BL6NJ_G0024274.1 mouse_genomes_project 17 51737319 51743105 + MGP_C57BL6NJ_P0048555 Trem2 protein_coding protein_coding MGP_C57BL6NJ_T0048556.1 MGP_C57BL6NJ_G0024274.1 mouse_genomes_project 17 51737320 51741390 + Trem2 protein_coding processed_transcript MGP_C57BL6NJ_T0099038.1 MGP_C57BL6NJ_G0037102.1 mouse_genomes_project 17 31862903 31863031 + Gm25447 rRNA rRNA MGP_C57BL6NJ_T0048153.1 MGP_C57BL6NJ_G0024140.1 mouse_genomes_project 17 40275151 40276090 + MGP_C57BL6NJ_P0048153 Olfr134 protein_coding protein_coding MGP_C57BL6NJ_T0003935.1 MGP_C57BL6NJ_G0003526.1 mouse_genomes_project 17 69470029 69475276 - Gm17133 antisense antisense MGP_C57BL6NJ_T0102200.1 MGP_C57BL6NJ_G0040212.1 mouse_genomes_project 17 94767543 94773038 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102201.1 MGP_C57BL6NJ_G0040212.1 mouse_genomes_project 17 94772746 94773145 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0048761.1 MGP_C57BL6NJ_G0024351.1 mouse_genomes_project 17 61005373 61007346 + MGP_C57BL6NJ_P0048761 Alkbh7 protein_coding protein_coding MGP_C57BL6NJ_T0048762.1 MGP_C57BL6NJ_G0024351.1 mouse_genomes_project 17 61005377 61007357 + MGP_C57BL6NJ_P0048762 Alkbh7 protein_coding protein_coding MGP_C57BL6NJ_T0048763.1 MGP_C57BL6NJ_G0024351.1 mouse_genomes_project 17 61006514 61007172 + Alkbh7 protein_coding retained_intron MGP_C57BL6NJ_T0010406.1 MGP_C57BL6NJ_G0008491.1 mouse_genomes_project 17 27455018 27455085 + Mir7677 miRNA miRNA MGP_C57BL6NJ_T0048228.1 MGP_C57BL6NJ_G0024188.1 mouse_genomes_project 17 47119029 47222656 + MGP_C57BL6NJ_P0048228 Clic5 protein_coding protein_coding MGP_C57BL6NJ_T0049168.1 MGP_C57BL6NJ_G0024498.1 mouse_genomes_project 17 93216298 93298998 + MGP_C57BL6NJ_P0049168 Epas1 protein_coding protein_coding MGP_C57BL6NJ_T0100065.1 MGP_C57BL6NJ_G0038111.1 mouse_genomes_project 17 1898890 1898997 + Gm23186 snRNA snRNA MGP_C57BL6NJ_T0100085.1 MGP_C57BL6NJ_G0038131.1 mouse_genomes_project 17 48656970 48657051 + Gm25008 snRNA snRNA MGP_C57BL6NJ_T0007073.1 MGP_C57BL6NJ_G0005823.1 mouse_genomes_project 17 20895570 20899269 - Gm26753 lincRNA lincRNA MGP_C57BL6NJ_T0003898.1 MGP_C57BL6NJ_G0003497.1 mouse_genomes_project 17 33801203 33812617 + Gm26693 antisense antisense MGP_C57BL6NJ_T0048493.1 MGP_C57BL6NJ_G0024260.1 mouse_genomes_project 17 50942361 50945323 - MGP_C57BL6NJ_P0048493 protein_coding protein_coding MGP_C57BL6NJ_T0048494.1 MGP_C57BL6NJ_G0024260.1 mouse_genomes_project 17 50942361 50946313 - MGP_C57BL6NJ_P0048494 protein_coding protein_coding MGP_C57BL6NJ_T0048495.1 MGP_C57BL6NJ_G0024260.1 mouse_genomes_project 17 50942463 50944743 - protein_coding retained_intron MGP_C57BL6NJ_T0048497.1 MGP_C57BL6NJ_G0024260.1 mouse_genomes_project 17 50943422 50945250 - MGP_C57BL6NJ_P0048497 protein_coding protein_coding MGP_C57BL6NJ_T0048498.1 MGP_C57BL6NJ_G0024260.1 mouse_genomes_project 17 50946062 50948584 - protein_coding retained_intron MGP_C57BL6NJ_T0045970.1 MGP_C57BL6NJ_G0023556.1 mouse_genomes_project 17 10419467 10461280 + MGP_C57BL6NJ_P0045970 Plg protein_coding protein_coding MGP_C57BL6NJ_T0100104.1 MGP_C57BL6NJ_G0038150.1 mouse_genomes_project 17 95002124 95002219 - Gm22542 snRNA snRNA MGP_C57BL6NJ_T0010399.1 MGP_C57BL6NJ_G0008484.1 mouse_genomes_project 17 25929815 25929887 + Mir6966 miRNA miRNA MGP_C57BL6NJ_T0003928.1 MGP_C57BL6NJ_G0003521.1 mouse_genomes_project 17 53312512 53316712 - Gm16555 antisense antisense MGP_C57BL6NJ_T0102445.1 MGP_C57BL6NJ_G0040344.1 mouse_genomes_project 17 36789987 36791043 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102446.1 MGP_C57BL6NJ_G0040344.1 mouse_genomes_project 17 36790370 36791226 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0048420.1 MGP_C57BL6NJ_G0024234.1 mouse_genomes_project 17 49847362 49861403 + Pex6 protein_coding retained_intron MGP_C57BL6NJ_T0048421.1 MGP_C57BL6NJ_G0024234.1 mouse_genomes_project 17 49847362 49861403 + MGP_C57BL6NJ_P0048421 Pex6 protein_coding protein_coding MGP_C57BL6NJ_T0048422.1 MGP_C57BL6NJ_G0024234.1 mouse_genomes_project 17 49847375 49853293 + Pex6 protein_coding processed_transcript MGP_C57BL6NJ_T0048423.1 MGP_C57BL6NJ_G0024234.1 mouse_genomes_project 17 49856047 49857591 + Pex6 protein_coding retained_intron MGP_C57BL6NJ_T0047846.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37150458 37164355 + MGP_C57BL6NJ_P0047846 Cchcr1 protein_coding protein_coding MGP_C57BL6NJ_T0047847.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37150474 37153889 + Cchcr1 protein_coding retained_intron MGP_C57BL6NJ_T0047848.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37150534 37164374 + MGP_C57BL6NJ_P0047848 Cchcr1 protein_coding protein_coding MGP_C57BL6NJ_T0047849.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37150821 37164364 + MGP_C57BL6NJ_P0047849 Cchcr1 protein_coding protein_coding MGP_C57BL6NJ_T0047850.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37153244 37154520 + Cchcr1 protein_coding processed_transcript MGP_C57BL6NJ_T0047851.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37157962 37158715 + Cchcr1 protein_coding retained_intron MGP_C57BL6NJ_T0047852.1 MGP_C57BL6NJ_G0024044.1 mouse_genomes_project 17 37162250 37162792 + Cchcr1 protein_coding retained_intron MGP_C57BL6NJ_T0047754.1 MGP_C57BL6NJ_G0024022.1 mouse_genomes_project 17 36589114 36592812 + MGP_C57BL6NJ_P0047754 Ly6g5c protein_coding protein_coding MGP_C57BL6NJ_T0101365.1 MGP_C57BL6NJ_G0039411.1 mouse_genomes_project 17 10994839 10994967 + Snora20 snoRNA snoRNA MGP_C57BL6NJ_T0010407.1 MGP_C57BL6NJ_G0008492.1 mouse_genomes_project 17 27708384 27708445 - Mir7214 miRNA miRNA MGP_C57BL6NJ_T0003881.1 MGP_C57BL6NJ_G0003486.1 mouse_genomes_project 17 27189430 27190454 + BC051226 antisense antisense MGP_C57BL6NJ_T0003882.1 MGP_C57BL6NJ_G0003486.1 mouse_genomes_project 17 27189538 27190566 + BC051226 antisense antisense MGP_C57BL6NJ_T0003883.1 MGP_C57BL6NJ_G0003486.1 mouse_genomes_project 17 27189569 27190563 + BC051226 antisense antisense MGP_C57BL6NJ_T0046173.1 MGP_C57BL6NJ_G0023642.1 mouse_genomes_project 17 21170016 21170271 + MGP_C57BL6NJ_P0046173 Gm10226 protein_coding protein_coding MGP_C57BL6NJ_T0045892.1 MGP_C57BL6NJ_G0023534.1 mouse_genomes_project 17 4886920 4888713 - MGP_C57BL6NJ_P0045892 Ttll2 protein_coding protein_coding MGP_C57BL6NJ_T0010408.1 MGP_C57BL6NJ_G0008493.1 mouse_genomes_project 17 27722758 27722834 + Mir7216 miRNA miRNA MGP_C57BL6NJ_T0007088.1 MGP_C57BL6NJ_G0005836.1 mouse_genomes_project 17 29065602 29066370 - Gm20109 lincRNA lincRNA MGP_C57BL6NJ_T0048750.1 MGP_C57BL6NJ_G0024343.1 mouse_genomes_project 17 60752812 60758158 + MGP_C57BL6NJ_P0048750 Dus3l protein_coding protein_coding MGP_C57BL6NJ_T0001125.1 MGP_C57BL6NJ_G0001031.1 mouse_genomes_project 17 55436774 55438869 + TEC TEC MGP_C57BL6NJ_T0048039.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786089 38786811 + Trim26 protein_coding retained_intron MGP_C57BL6NJ_T0048040.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786096 38804728 + Trim26 protein_coding retained_intron MGP_C57BL6NJ_T0048041.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786096 38808077 + MGP_C57BL6NJ_P0048041 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048042.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786098 38808095 + MGP_C57BL6NJ_P0048042 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048043.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786101 38808077 + MGP_C57BL6NJ_P0048043 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048044.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786128 38801386 + MGP_C57BL6NJ_P0048044 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048045.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786139 38808094 + MGP_C57BL6NJ_P0048045 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048046.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38786139 38806324 + MGP_C57BL6NJ_P0048046 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048047.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38801198 38806636 + MGP_C57BL6NJ_P0048047 Trim26 protein_coding protein_coding MGP_C57BL6NJ_T0048048.1 MGP_C57BL6NJ_G0024085.1 mouse_genomes_project 17 38803330 38808095 + Trim26 protein_coding processed_transcript MGP_C57BL6NJ_T0102903.1 MGP_C57BL6NJ_G0040697.1 mouse_genomes_project 17 19123627 19124530 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048344.1 MGP_C57BL6NJ_G0024211.1 mouse_genomes_project 17 49295628 49336316 + MGP_C57BL6NJ_P0048344 Xpo5 protein_coding protein_coding MGP_C57BL6NJ_T0048767.1 MGP_C57BL6NJ_G0024355.1 mouse_genomes_project 17 61046188 61056939 - MGP_C57BL6NJ_P0048767 Slc25a41 protein_coding protein_coding MGP_C57BL6NJ_T0048768.1 MGP_C57BL6NJ_G0024355.1 mouse_genomes_project 17 61046340 61056932 - MGP_C57BL6NJ_P0048768 Slc25a41 protein_coding protein_coding MGP_C57BL6NJ_T0047606.1 MGP_C57BL6NJ_G0023995.1 mouse_genomes_project 17 36225607 36226847 - protein_coding retained_intron MGP_C57BL6NJ_T0007075.1 MGP_C57BL6NJ_G0005825.1 mouse_genomes_project 17 22478357 22517227 - Gm16386 lincRNA lincRNA MGP_C57BL6NJ_T0048119.1 MGP_C57BL6NJ_G0024113.1 mouse_genomes_project 17 39430001 39431034 + MGP_C57BL6NJ_P0048119 Olfr107 protein_coding protein_coding MGP_C57BL6NJ_T0049144.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91003870 91089268 - MGP_C57BL6NJ_P0049144 Lrpprc protein_coding protein_coding MGP_C57BL6NJ_T0049145.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91011404 91029805 - Lrpprc protein_coding processed_transcript MGP_C57BL6NJ_T0049146.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91029800 91049816 - MGP_C57BL6NJ_P0049146 Lrpprc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049147.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91047334 91049816 - Lrpprc protein_coding retained_intron MGP_C57BL6NJ_T0049148.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91065064 91089499 - Lrpprc protein_coding retained_intron MGP_C57BL6NJ_T0049149.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91066225 91089272 - Lrpprc protein_coding retained_intron MGP_C57BL6NJ_T0049150.1 MGP_C57BL6NJ_G0024488.1 mouse_genomes_project 17 91069124 91076253 - Lrpprc protein_coding processed_transcript MGP_C57BL6NJ_T0048408.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49777657 49794025 + MGP_C57BL6NJ_P0048408 Cul7 protein_coding protein_coding MGP_C57BL6NJ_T0048409.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49777883 49782168 + Cul7 protein_coding retained_intron MGP_C57BL6NJ_T0048410.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49777892 49784383 + Cul7 protein_coding retained_intron MGP_C57BL6NJ_T0048411.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49778743 49794025 + MGP_C57BL6NJ_P0048411 Cul7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048412.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49780171 49782954 + Cul7 protein_coding processed_transcript MGP_C57BL6NJ_T0048413.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49780213 49794025 + MGP_C57BL6NJ_P0048413 Cul7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048414.1 MGP_C57BL6NJ_G0024229.1 mouse_genomes_project 17 49789093 49794025 + Cul7 protein_coding retained_intron MGP_C57BL6NJ_T0046593.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717372 25802792 + MGP_C57BL6NJ_P0046593 Lmf1 protein_coding protein_coding MGP_C57BL6NJ_T0046594.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717375 25802792 + MGP_C57BL6NJ_P0046594 Lmf1 protein_coding protein_coding MGP_C57BL6NJ_T0046595.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717385 25736753 + Lmf1 protein_coding retained_intron MGP_C57BL6NJ_T0046596.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717385 25802689 + MGP_C57BL6NJ_P0046596 Lmf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046597.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717395 25794527 + MGP_C57BL6NJ_P0046597 Lmf1 protein_coding protein_coding MGP_C57BL6NJ_T0046598.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717397 25727425 + Lmf1 protein_coding retained_intron MGP_C57BL6NJ_T0046599.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717397 25774443 + Lmf1 protein_coding retained_intron MGP_C57BL6NJ_T0046600.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717397 25787695 + Lmf1 protein_coding retained_intron MGP_C57BL6NJ_T0046601.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25717518 25770283 + Lmf1 protein_coding processed_transcript MGP_C57BL6NJ_T0046602.1 MGP_C57BL6NJ_G0023765.1 mouse_genomes_project 17 25795087 25796126 + MGP_C57BL6NJ_P0046602 Lmf1 protein_coding protein_coding MGP_C57BL6NJ_T0007139.1 MGP_C57BL6NJ_G0005874.1 mouse_genomes_project 17 69215253 69261778 - AU016765 lincRNA lincRNA MGP_C57BL6NJ_T0007140.1 MGP_C57BL6NJ_G0005874.1 mouse_genomes_project 17 69215306 69261736 - AU016765 lincRNA lincRNA MGP_C57BL6NJ_T0007141.1 MGP_C57BL6NJ_G0005874.1 mouse_genomes_project 17 69215309 69261816 - AU016765 lincRNA lincRNA MGP_C57BL6NJ_T0007142.1 MGP_C57BL6NJ_G0005874.1 mouse_genomes_project 17 69215311 69261659 - AU016765 lincRNA lincRNA MGP_C57BL6NJ_T0046950.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835461 28839847 + MGP_C57BL6NJ_P0046950 Rpl10a protein_coding protein_coding MGP_C57BL6NJ_T0046951.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835573 28838453 + Rpl10a protein_coding retained_intron MGP_C57BL6NJ_T0046952.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835574 28839847 + MGP_C57BL6NJ_P0046952 Rpl10a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046953.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835600 28838210 + Rpl10a protein_coding retained_intron MGP_C57BL6NJ_T0046954.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835637 28838337 + Rpl10a protein_coding retained_intron MGP_C57BL6NJ_T0046955.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28835801 28839512 + Rpl10a protein_coding retained_intron MGP_C57BL6NJ_T0046956.1 MGP_C57BL6NJ_G0023843.1 mouse_genomes_project 17 28838092 28839842 + Rpl10a protein_coding retained_intron MGP_C57BL6NJ_T0048160.1 MGP_C57BL6NJ_G0024144.1 mouse_genomes_project 17 40452463 40453402 + MGP_C57BL6NJ_P0048160 Olfr136 protein_coding protein_coding MGP_C57BL6NJ_T0046208.1 MGP_C57BL6NJ_G0023658.1 mouse_genomes_project 17 22423647 22440424 + MGP_C57BL6NJ_P0046208 Gm5493 protein_coding protein_coding MGP_C57BL6NJ_T0102979.1 MGP_C57BL6NJ_G0040773.1 mouse_genomes_project 17 40432442 40434155 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047245.1 MGP_C57BL6NJ_G0023910.1 mouse_genomes_project 17 33342414 33354137 - MGP_C57BL6NJ_P0047245 Pglyrp2 protein_coding protein_coding MGP_C57BL6NJ_T0047246.1 MGP_C57BL6NJ_G0023910.1 mouse_genomes_project 17 33342675 33355843 - MGP_C57BL6NJ_P0047246 Pglyrp2 protein_coding protein_coding MGP_C57BL6NJ_T0048426.1 MGP_C57BL6NJ_G0024236.1 mouse_genomes_project 17 49872947 49893162 - MGP_C57BL6NJ_P0048426 Cnpy3 protein_coding protein_coding MGP_C57BL6NJ_T0048427.1 MGP_C57BL6NJ_G0024236.1 mouse_genomes_project 17 49872998 49893145 - MGP_C57BL6NJ_P0048427 Cnpy3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048428.1 MGP_C57BL6NJ_G0024236.1 mouse_genomes_project 17 49873895 49874874 - Cnpy3 protein_coding retained_intron MGP_C57BL6NJ_T0048429.1 MGP_C57BL6NJ_G0024236.1 mouse_genomes_project 17 49887934 49893143 - MGP_C57BL6NJ_P0048429 Cnpy3 protein_coding protein_coding MGP_C57BL6NJ_T0048430.1 MGP_C57BL6NJ_G0024236.1 mouse_genomes_project 17 49888166 49893125 - Cnpy3 protein_coding retained_intron MGP_C57BL6NJ_T0007068.1 MGP_C57BL6NJ_G0005819.1 mouse_genomes_project 17 13818476 13826575 + lincRNA lincRNA MGP_C57BL6NJ_T0048071.1 MGP_C57BL6NJ_G0024094.1 mouse_genomes_project 17 38935026 38938556 - MGP_C57BL6NJ_P0048071 2410137M14Rik protein_coding protein_coding MGP_C57BL6NJ_T0048072.1 MGP_C57BL6NJ_G0024094.1 mouse_genomes_project 17 38935163 38938536 - MGP_C57BL6NJ_P0048072 2410137M14Rik protein_coding protein_coding MGP_C57BL6NJ_T0048181.1 MGP_C57BL6NJ_G0024164.1 mouse_genomes_project 17 43430758 43462420 - MGP_C57BL6NJ_P0048181 Crisp2 protein_coding protein_coding MGP_C57BL6NJ_T0048182.1 MGP_C57BL6NJ_G0024164.1 mouse_genomes_project 17 43451543 43462451 - MGP_C57BL6NJ_P0048182 Crisp2 protein_coding protein_coding MGP_C57BL6NJ_T0048183.1 MGP_C57BL6NJ_G0024164.1 mouse_genomes_project 17 43453224 43462381 - MGP_C57BL6NJ_P0048183 Crisp2 protein_coding protein_coding MGP_C57BL6NJ_T0048184.1 MGP_C57BL6NJ_G0024164.1 mouse_genomes_project 17 43453300 43462372 - MGP_C57BL6NJ_P0048184 Crisp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048185.1 MGP_C57BL6NJ_G0024164.1 mouse_genomes_project 17 43461560 43469401 - Crisp2 protein_coding processed_transcript MGP_C57BL6NJ_T0047811.1 MGP_C57BL6NJ_G0024035.1 mouse_genomes_project 17 36727033 36742660 - MGP_C57BL6NJ_P0047811 Nfkbil1 protein_coding protein_coding MGP_C57BL6NJ_T0047813.1 MGP_C57BL6NJ_G0024035.1 mouse_genomes_project 17 36727694 36728516 - Nfkbil1 protein_coding processed_transcript MGP_C57BL6NJ_T0007066.1 MGP_C57BL6NJ_G0005817.1 mouse_genomes_project 17 13495420 13504931 + Gm28873 lincRNA lincRNA MGP_C57BL6NJ_T0048141.1 MGP_C57BL6NJ_G0024131.1 mouse_genomes_project 17 39908025 39909143 + MGP_C57BL6NJ_P0048141 Olfr125 protein_coding protein_coding MGP_C57BL6NJ_T0046716.1 MGP_C57BL6NJ_G0023792.1 mouse_genomes_project 17 26128673 26156083 - MGP_C57BL6NJ_P0046716 Capn15 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046717.1 MGP_C57BL6NJ_G0023792.1 mouse_genomes_project 17 26129867 26156088 - MGP_C57BL6NJ_P0046717 Capn15 protein_coding protein_coding MGP_C57BL6NJ_T0046237.1 MGP_C57BL6NJ_G0023668.1 mouse_genomes_project 17 23556387 23564476 + MGP_C57BL6NJ_P0046237 Ccdc64b protein_coding protein_coding MGP_C57BL6NJ_T0046847.1 MGP_C57BL6NJ_G0023822.1 mouse_genomes_project 17 27490797 27502051 - MGP_C57BL6NJ_P0046847 Uqcc2 protein_coding protein_coding MGP_C57BL6NJ_T0046848.1 MGP_C57BL6NJ_G0023822.1 mouse_genomes_project 17 27490802 27501758 - Uqcc2 protein_coding processed_transcript MGP_C57BL6NJ_T0046849.1 MGP_C57BL6NJ_G0023822.1 mouse_genomes_project 17 27490804 27502037 - MGP_C57BL6NJ_P0046849 Uqcc2 protein_coding protein_coding MGP_C57BL6NJ_T0046850.1 MGP_C57BL6NJ_G0023822.1 mouse_genomes_project 17 27490804 27501764 - MGP_C57BL6NJ_P0046850 Uqcc2 protein_coding protein_coding MGP_C57BL6NJ_T0007100.1 MGP_C57BL6NJ_G0005844.1 mouse_genomes_project 17 33028947 33057823 + Gm17276 lincRNA lincRNA MGP_C57BL6NJ_T0013606.1 MGP_C57BL6NJ_G0011651.1 mouse_genomes_project 17 68314865 68315425 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100066.1 MGP_C57BL6NJ_G0038112.1 mouse_genomes_project 17 4910737 4910902 - Gm23050 snRNA snRNA MGP_C57BL6NJ_T0046549.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25356743 25358118 - Baiap3 protein_coding retained_intron MGP_C57BL6NJ_T0046550.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25356743 25372238 - MGP_C57BL6NJ_P0046550 Baiap3 protein_coding protein_coding MGP_C57BL6NJ_T0046551.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25357439 25369782 - MGP_C57BL6NJ_P0046551 Baiap3 protein_coding protein_coding MGP_C57BL6NJ_T0046552.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25357454 25358396 - MGP_C57BL6NJ_P0046552 Baiap3 protein_coding protein_coding MGP_C57BL6NJ_T0046553.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25357463 25372155 - MGP_C57BL6NJ_P0046553 Baiap3 protein_coding protein_coding MGP_C57BL6NJ_T0046554.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25357606 25372155 - MGP_C57BL6NJ_P0046554 Baiap3 protein_coding protein_coding MGP_C57BL6NJ_T0046555.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25358877 25361618 - Baiap3 protein_coding retained_intron MGP_C57BL6NJ_T0046556.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25361847 25363962 - Baiap3 protein_coding retained_intron MGP_C57BL6NJ_T0046557.1 MGP_C57BL6NJ_G0023753.1 mouse_genomes_project 17 25366852 25372148 - Baiap3 protein_coding retained_intron MGP_C57BL6NJ_T0048162.1 MGP_C57BL6NJ_G0024146.1 mouse_genomes_project 17 40692106 40952987 + MGP_C57BL6NJ_P0048162 protein_coding protein_coding MGP_C57BL6NJ_T0048163.1 MGP_C57BL6NJ_G0024146.1 mouse_genomes_project 17 40692106 40952984 + MGP_C57BL6NJ_P0048163 protein_coding protein_coding MGP_C57BL6NJ_T0013588.1 MGP_C57BL6NJ_G0011633.1 mouse_genomes_project 17 50863133 50868212 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047160.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32349944 32367909 - MGP_C57BL6NJ_P0047160 Wdr4 protein_coding protein_coding MGP_C57BL6NJ_T0047161.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32349945 32367842 - MGP_C57BL6NJ_P0047161 Wdr4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047162.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32349945 32368325 - MGP_C57BL6NJ_P0047162 Wdr4 protein_coding protein_coding MGP_C57BL6NJ_T0047163.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32349947 32367842 - MGP_C57BL6NJ_P0047163 Wdr4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047164.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32351748 32356901 - Wdr4 protein_coding retained_intron MGP_C57BL6NJ_T0047165.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32355070 32359187 - Wdr4 protein_coding retained_intron MGP_C57BL6NJ_T0047166.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32358656 32365486 - Wdr4 protein_coding retained_intron MGP_C57BL6NJ_T0047167.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32359144 32375491 - MGP_C57BL6NJ_P0047167 Wdr4 protein_coding protein_coding MGP_C57BL6NJ_T0047168.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32359154 32367852 - MGP_C57BL6NJ_P0047168 Wdr4 protein_coding protein_coding MGP_C57BL6NJ_T0047169.1 MGP_C57BL6NJ_G0023894.1 mouse_genomes_project 17 32368016 32375551 - Wdr4 protein_coding processed_transcript MGP_C57BL6NJ_T0013546.1 MGP_C57BL6NJ_G0011591.1 mouse_genomes_project 17 32862913 32863333 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048021.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38079525 38089398 - MGP_C57BL6NJ_P0048021 Trim39 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048022.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38079525 38092650 - MGP_C57BL6NJ_P0048022 Trim39 protein_coding protein_coding MGP_C57BL6NJ_T0048023.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38079525 38092213 - MGP_C57BL6NJ_P0048023 Trim39 protein_coding protein_coding MGP_C57BL6NJ_T0048024.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38079762 38089866 - MGP_C57BL6NJ_P0048024 Trim39 protein_coding protein_coding MGP_C57BL6NJ_T0048025.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38082184 38089341 - Trim39 protein_coding processed_transcript MGP_C57BL6NJ_T0048026.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38083257 38092029 - Trim39 protein_coding processed_transcript MGP_C57BL6NJ_T0048027.1 MGP_C57BL6NJ_G0024075.1 mouse_genomes_project 17 38083259 38092893 - Trim39 protein_coding retained_intron MGP_C57BL6NJ_T0048178.1 MGP_C57BL6NJ_G0024161.1 mouse_genomes_project 17 43257016 43261041 + MGP_C57BL6NJ_P0048178 Esp4 protein_coding protein_coding MGP_C57BL6NJ_T0046782.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26800797 26897468 + MGP_C57BL6NJ_P0046782 Ergic1 protein_coding protein_coding MGP_C57BL6NJ_T0046783.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26800826 26808190 + Ergic1 protein_coding processed_transcript MGP_C57BL6NJ_T0046784.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26800853 26895711 + Ergic1 protein_coding processed_transcript MGP_C57BL6NJ_T0046785.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26854137 26874990 + MGP_C57BL6NJ_P0046785 Ergic1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046786.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26861091 26895711 + Ergic1 protein_coding processed_transcript MGP_C57BL6NJ_T0046787.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26863825 26884419 + Ergic1 protein_coding retained_intron MGP_C57BL6NJ_T0046788.1 MGP_C57BL6NJ_G0023807.1 mouse_genomes_project 17 26879283 26895889 + MGP_C57BL6NJ_P0046788 Ergic1 protein_coding protein_coding MGP_C57BL6NJ_T0013523.1 MGP_C57BL6NJ_G0011568.1 mouse_genomes_project 17 6334699 6339302 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046629.1 MGP_C57BL6NJ_G0023773.1 mouse_genomes_project 17 25935587 25939591 + MGP_C57BL6NJ_P0046629 Ccdc78 protein_coding protein_coding MGP_C57BL6NJ_T0046630.1 MGP_C57BL6NJ_G0023773.1 mouse_genomes_project 17 25935623 25939267 + MGP_C57BL6NJ_P0046630 Ccdc78 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013600.1 MGP_C57BL6NJ_G0011645.1 mouse_genomes_project 17 58229264 58229405 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013583.1 MGP_C57BL6NJ_G0011628.1 mouse_genomes_project 17 40582331 40582461 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048115.1 MGP_C57BL6NJ_G0024110.1 mouse_genomes_project 17 39312232 39351152 - MGP_C57BL6NJ_P0048115 protein_coding protein_coding MGP_C57BL6NJ_T0048107.1 MGP_C57BL6NJ_G0024102.1 mouse_genomes_project 17 39185883 39188087 + MGP_C57BL6NJ_P0048107 Ubd protein_coding protein_coding MGP_C57BL6NJ_T0048290.1 MGP_C57BL6NJ_G0024201.1 mouse_genomes_project 17 48670351 48698859 - MGP_C57BL6NJ_P0048290 Capn11 protein_coding protein_coding MGP_C57BL6NJ_T0048291.1 MGP_C57BL6NJ_G0024201.1 mouse_genomes_project 17 48685112 48698831 - MGP_C57BL6NJ_P0048291 Capn11 protein_coding non_stop_decay MGP_C57BL6NJ_T0047044.1 MGP_C57BL6NJ_G0023862.1 mouse_genomes_project 17 29733094 29743022 + MGP_C57BL6NJ_P0047044 Cdkn1a protein_coding protein_coding MGP_C57BL6NJ_T0047045.1 MGP_C57BL6NJ_G0023862.1 mouse_genomes_project 17 29735887 29744217 + MGP_C57BL6NJ_P0047045 Cdkn1a protein_coding protein_coding MGP_C57BL6NJ_T0047046.1 MGP_C57BL6NJ_G0023862.1 mouse_genomes_project 17 29741701 29743064 + MGP_C57BL6NJ_P0047046 Cdkn1a protein_coding protein_coding MGP_C57BL6NJ_T0046928.1 MGP_C57BL6NJ_G0023840.1 mouse_genomes_project 17 28691314 28722599 + MGP_C57BL6NJ_P0046928 Def6 protein_coding protein_coding MGP_C57BL6NJ_T0046929.1 MGP_C57BL6NJ_G0023840.1 mouse_genomes_project 17 28691373 28698467 + Def6 protein_coding processed_transcript MGP_C57BL6NJ_T0007138.1 MGP_C57BL6NJ_G0005873.1 mouse_genomes_project 17 64223768 64373836 - Gm29051 lincRNA lincRNA MGP_C57BL6NJ_T0047138.1 MGP_C57BL6NJ_G0023890.1 mouse_genomes_project 17 32015729 32059431 + MGP_C57BL6NJ_P0047138 Ubash3a protein_coding protein_coding MGP_C57BL6NJ_T0047139.1 MGP_C57BL6NJ_G0023890.1 mouse_genomes_project 17 32015936 32027459 + MGP_C57BL6NJ_P0047139 Ubash3a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047140.1 MGP_C57BL6NJ_G0023890.1 mouse_genomes_project 17 32015945 32025229 + MGP_C57BL6NJ_P0047140 Ubash3a protein_coding protein_coding MGP_C57BL6NJ_T0047141.1 MGP_C57BL6NJ_G0023890.1 mouse_genomes_project 17 32021091 32059431 + Ubash3a protein_coding processed_transcript MGP_C57BL6NJ_T0047142.1 MGP_C57BL6NJ_G0023890.1 mouse_genomes_project 17 32021275 32029210 + Ubash3a protein_coding processed_transcript MGP_C57BL6NJ_T0048823.1 MGP_C57BL6NJ_G0024379.1 mouse_genomes_project 17 69309491 69476290 + MGP_C57BL6NJ_P0048823 Man2a1 protein_coding protein_coding MGP_C57BL6NJ_T0048824.1 MGP_C57BL6NJ_G0024379.1 mouse_genomes_project 17 69431499 69432881 + Man2a1 protein_coding retained_intron MGP_C57BL6NJ_T0048825.1 MGP_C57BL6NJ_G0024379.1 mouse_genomes_project 17 69431697 69476018 + MGP_C57BL6NJ_P0048825 Man2a1 protein_coding protein_coding MGP_C57BL6NJ_T0048888.1 MGP_C57BL6NJ_G0024399.1 mouse_genomes_project 17 73191922 73359890 + L3mbtl4 protein_coding retained_intron MGP_C57BL6NJ_T0048889.1 MGP_C57BL6NJ_G0024399.1 mouse_genomes_project 17 73191922 73523312 + MGP_C57BL6NJ_P0048889 L3mbtl4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048890.1 MGP_C57BL6NJ_G0024399.1 mouse_genomes_project 17 73191922 73533948 + MGP_C57BL6NJ_P0048890 L3mbtl4 protein_coding protein_coding MGP_C57BL6NJ_T0048891.1 MGP_C57BL6NJ_G0024399.1 mouse_genomes_project 17 73191922 73664344 + MGP_C57BL6NJ_P0048891 L3mbtl4 protein_coding protein_coding MGP_C57BL6NJ_T0048892.1 MGP_C57BL6NJ_G0024399.1 mouse_genomes_project 17 73267847 73664344 + MGP_C57BL6NJ_P0048892 L3mbtl4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013595.1 MGP_C57BL6NJ_G0011640.1 mouse_genomes_project 17 57486039 57487040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100094.1 MGP_C57BL6NJ_G0038140.1 mouse_genomes_project 17 70886252 70886359 + Gm23264 snRNA snRNA MGP_C57BL6NJ_T0048706.1 MGP_C57BL6NJ_G0024331.1 mouse_genomes_project 17 60372432 60421926 - MGP_C57BL6NJ_P0048706 Ptprs protein_coding protein_coding MGP_C57BL6NJ_T0048707.1 MGP_C57BL6NJ_G0024331.1 mouse_genomes_project 17 60372434 60436088 - MGP_C57BL6NJ_P0048707 Ptprs protein_coding protein_coding MGP_C57BL6NJ_T0048708.1 MGP_C57BL6NJ_G0024331.1 mouse_genomes_project 17 60382238 60435974 - Ptprs protein_coding processed_transcript MGP_C57BL6NJ_T0048709.1 MGP_C57BL6NJ_G0024331.1 mouse_genomes_project 17 60384978 60436051 - MGP_C57BL6NJ_P0048709 Ptprs protein_coding unknown_likely_coding MGP_C57BL6NJ_T0001116.1 MGP_C57BL6NJ_G0001022.1 mouse_genomes_project 17 32389220 32395822 - TEC TEC MGP_C57BL6NJ_T0102945.1 MGP_C57BL6NJ_G0040739.1 mouse_genomes_project 17 37945538 37945772 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048064.1 MGP_C57BL6NJ_G0024092.1 mouse_genomes_project 17 38905039 38909001 - MGP_C57BL6NJ_P0048064 Znrd1 protein_coding protein_coding MGP_C57BL6NJ_T0048065.1 MGP_C57BL6NJ_G0024092.1 mouse_genomes_project 17 38905041 38909052 - MGP_C57BL6NJ_P0048065 Znrd1 protein_coding protein_coding MGP_C57BL6NJ_T0048066.1 MGP_C57BL6NJ_G0024092.1 mouse_genomes_project 17 38905094 38908837 - MGP_C57BL6NJ_P0048066 Znrd1 protein_coding protein_coding MGP_C57BL6NJ_T0048067.1 MGP_C57BL6NJ_G0024092.1 mouse_genomes_project 17 38905126 38909078 - Znrd1 protein_coding processed_transcript MGP_C57BL6NJ_T0048816.1 MGP_C57BL6NJ_G0024376.1 mouse_genomes_project 17 68483695 68484187 - MGP_C57BL6NJ_P0048816 A930002H24Rik protein_coding protein_coding MGP_C57BL6NJ_T0101376.1 MGP_C57BL6NJ_G0039422.1 mouse_genomes_project 17 36754042 36754118 + Gm25128 snoRNA snoRNA MGP_C57BL6NJ_T0049096.1 MGP_C57BL6NJ_G0024463.1 mouse_genomes_project 17 86183914 86239525 - MGP_C57BL6NJ_P0049096 Dhx57 protein_coding protein_coding MGP_C57BL6NJ_T0049097.1 MGP_C57BL6NJ_G0024463.1 mouse_genomes_project 17 86183914 86239525 - MGP_C57BL6NJ_P0049097 Dhx57 protein_coding protein_coding MGP_C57BL6NJ_T0048478.1 MGP_C57BL6NJ_G0024255.1 mouse_genomes_project 17 50853978 50870291 + MGP_C57BL6NJ_P0048478 Med20 protein_coding protein_coding MGP_C57BL6NJ_T0048479.1 MGP_C57BL6NJ_G0024255.1 mouse_genomes_project 17 50853981 50861926 + Med20 protein_coding retained_intron MGP_C57BL6NJ_T0048482.1 MGP_C57BL6NJ_G0024255.1 mouse_genomes_project 17 50854004 50870121 + Med20 protein_coding retained_intron MGP_C57BL6NJ_T0048484.1 MGP_C57BL6NJ_G0024255.1 mouse_genomes_project 17 50854017 50855692 + Med20 protein_coding retained_intron MGP_C57BL6NJ_T0047297.1 MGP_C57BL6NJ_G0023934.1 mouse_genomes_project 17 34494959 34522364 - Zfp101 protein_coding processed_transcript MGP_C57BL6NJ_T0047298.1 MGP_C57BL6NJ_G0023934.1 mouse_genomes_project 17 34508242 34522627 - MGP_C57BL6NJ_P0047298 Zfp101 protein_coding protein_coding MGP_C57BL6NJ_T0047299.1 MGP_C57BL6NJ_G0023934.1 mouse_genomes_project 17 34510341 34522343 - MGP_C57BL6NJ_P0047299 Zfp101 protein_coding protein_coding MGP_C57BL6NJ_T0047300.1 MGP_C57BL6NJ_G0023934.1 mouse_genomes_project 17 34511051 34522609 - MGP_C57BL6NJ_P0047300 Zfp101 protein_coding protein_coding MGP_C57BL6NJ_T0047301.1 MGP_C57BL6NJ_G0023934.1 mouse_genomes_project 17 34513636 34522591 - Zfp101 protein_coding processed_transcript MGP_C57BL6NJ_T0047653.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36311730 36335868 - MGP_C57BL6NJ_P0047653 C2 protein_coding protein_coding MGP_C57BL6NJ_T0047654.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36311731 36335942 - MGP_C57BL6NJ_P0047654 C2 protein_coding protein_coding MGP_C57BL6NJ_T0047655.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36311732 36349677 - MGP_C57BL6NJ_P0047655 C2 protein_coding protein_coding MGP_C57BL6NJ_T0047656.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36312798 36313539 - MGP_C57BL6NJ_P0047656 C2 protein_coding protein_coding MGP_C57BL6NJ_T0047657.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36313295 36314079 - C2 protein_coding retained_intron MGP_C57BL6NJ_T0047658.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36328714 36335809 - C2 protein_coding processed_transcript MGP_C57BL6NJ_T0047660.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36347230 36349687 - C2 protein_coding processed_transcript MGP_C57BL6NJ_T0047661.1 MGP_C57BL6NJ_G0024002.1 mouse_genomes_project 17 36347233 36352883 - C2 protein_coding processed_transcript MGP_C57BL6NJ_T0013626.1 MGP_C57BL6NJ_G0011671.1 mouse_genomes_project 17 98580306 98581533 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0045973.1 MGP_C57BL6NJ_G0023559.1 mouse_genomes_project 17 10703586 10730026 - MGP_C57BL6NJ_P0045973 Slc22a1 protein_coding protein_coding MGP_C57BL6NJ_T0003887.1 MGP_C57BL6NJ_G0003490.1 mouse_genomes_project 17 28460152 28480467 - Gm15598 antisense antisense MGP_C57BL6NJ_T0047604.1 MGP_C57BL6NJ_G0023994.1 mouse_genomes_project 17 36172207 36242667 - protein_coding retained_intron MGP_C57BL6NJ_T0047605.1 MGP_C57BL6NJ_G0023994.1 mouse_genomes_project 17 36175761 36249539 - MGP_C57BL6NJ_P0047605 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013608.1 MGP_C57BL6NJ_G0011653.1 mouse_genomes_project 17 73277780 73278311 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047497.1 MGP_C57BL6NJ_G0023969.1 mouse_genomes_project 17 35491855 35497910 + MGP_C57BL6NJ_P0047497 Psmb8 protein_coding protein_coding MGP_C57BL6NJ_T0047498.1 MGP_C57BL6NJ_G0023969.1 mouse_genomes_project 17 35491924 35498447 + MGP_C57BL6NJ_P0047498 Psmb8 protein_coding protein_coding MGP_C57BL6NJ_T0047499.1 MGP_C57BL6NJ_G0023969.1 mouse_genomes_project 17 35492743 35498417 + Psmb8 protein_coding retained_intron MGP_C57BL6NJ_T0046512.1 MGP_C57BL6NJ_G0023744.1 mouse_genomes_project 17 25156470 25179944 - MGP_C57BL6NJ_P0046512 Tmem204 protein_coding protein_coding MGP_C57BL6NJ_T0046513.1 MGP_C57BL6NJ_G0023744.1 mouse_genomes_project 17 25156672 25176987 - MGP_C57BL6NJ_P0046513 Tmem204 protein_coding protein_coding MGP_C57BL6NJ_T0048360.1 MGP_C57BL6NJ_G0024215.1 mouse_genomes_project 17 49351823 49378624 - MGP_C57BL6NJ_P0048360 Tjap1 protein_coding protein_coding MGP_C57BL6NJ_T0048361.1 MGP_C57BL6NJ_G0024215.1 mouse_genomes_project 17 49351823 49378624 - MGP_C57BL6NJ_P0048361 Tjap1 protein_coding protein_coding MGP_C57BL6NJ_T0048362.1 MGP_C57BL6NJ_G0024215.1 mouse_genomes_project 17 49351823 49378624 - MGP_C57BL6NJ_P0048362 Tjap1 protein_coding protein_coding MGP_C57BL6NJ_T0048363.1 MGP_C57BL6NJ_G0024215.1 mouse_genomes_project 17 49351841 49357760 - MGP_C57BL6NJ_P0048363 Tjap1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0018035.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408808 36409815 - 1110038B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018036.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408811 36411019 - 1110038B12Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018037.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408811 36411027 - 1110038B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018038.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408811 36411042 - 1110038B12Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018039.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408812 36411005 - 1110038B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018040.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36408813 36411039 - 1110038B12Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018041.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36410016 36411039 - 1110038B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018042.1 MGP_C57BL6NJ_G0015743.1 mouse_genomes_project 17 36410164 36411033 - 1110038B12Rik processed_transcript retained_intron MGP_C57BL6NJ_T0013559.1 MGP_C57BL6NJ_G0011604.1 mouse_genomes_project 17 37989898 37990114 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046614.1 MGP_C57BL6NJ_G0023770.1 mouse_genomes_project 17 25894623 25900337 - MGP_C57BL6NJ_P0046614 Msln protein_coding protein_coding MGP_C57BL6NJ_T0003884.1 MGP_C57BL6NJ_G0003487.1 mouse_genomes_project 17 27465471 27467320 - Itpr3os antisense antisense MGP_C57BL6NJ_T0049172.1 MGP_C57BL6NJ_G0024501.1 mouse_genomes_project 17 93442710 93481593 + MGP_C57BL6NJ_P0049172 Rhoq protein_coding protein_coding MGP_C57BL6NJ_T0049173.1 MGP_C57BL6NJ_G0024501.1 mouse_genomes_project 17 93442920 93476622 + MGP_C57BL6NJ_P0049173 Rhoq protein_coding protein_coding MGP_C57BL6NJ_T0101392.1 MGP_C57BL6NJ_G0039438.1 mouse_genomes_project 17 93979412 93979546 - Gm26005 snoRNA snoRNA MGP_C57BL6NJ_T0046649.1 MGP_C57BL6NJ_G0023781.1 mouse_genomes_project 17 25984854 25987728 - MGP_C57BL6NJ_P0046649 Rhbdl1 protein_coding protein_coding MGP_C57BL6NJ_T0046650.1 MGP_C57BL6NJ_G0023781.1 mouse_genomes_project 17 25984991 25987515 - MGP_C57BL6NJ_P0046650 Rhbdl1 protein_coding protein_coding MGP_C57BL6NJ_T0046651.1 MGP_C57BL6NJ_G0023781.1 mouse_genomes_project 17 25986205 25987684 - MGP_C57BL6NJ_P0046651 Rhbdl1 protein_coding protein_coding MGP_C57BL6NJ_T0102896.1 MGP_C57BL6NJ_G0040690.1 mouse_genomes_project 17 18022222 18023537 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0047805.1 MGP_C57BL6NJ_G0024032.1 mouse_genomes_project 17 36688811 36690707 + MGP_C57BL6NJ_P0047805 Ltb protein_coding protein_coding MGP_C57BL6NJ_T0047806.1 MGP_C57BL6NJ_G0024032.1 mouse_genomes_project 17 36688895 36690710 + Ltb protein_coding retained_intron MGP_C57BL6NJ_T0047807.1 MGP_C57BL6NJ_G0024032.1 mouse_genomes_project 17 36688998 36690725 + MGP_C57BL6NJ_P0047807 Ltb protein_coding protein_coding MGP_C57BL6NJ_T0003903.1 MGP_C57BL6NJ_G0003501.1 mouse_genomes_project 17 35995592 35996018 + Gm20463 antisense antisense MGP_C57BL6NJ_T0011701.1 MGP_C57BL6NJ_G0009786.1 mouse_genomes_project 17 91993392 91993715 + Gm27283 misc_RNA misc_RNA MGP_C57BL6NJ_T0018055.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91976759 91993781 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018056.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91978041 91996805 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018057.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91985832 91996798 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018058.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91986399 91996831 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018059.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91988019 91996773 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018060.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91988961 91996708 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018061.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91989706 91996818 - Six3os1 processed_transcript retained_intron MGP_C57BL6NJ_T0018062.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91990088 91996654 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018063.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91990088 91996656 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018064.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91991341 91996708 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018065.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91991669 91994679 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018066.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91992149 91996506 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0018067.1 MGP_C57BL6NJ_G0015748.1 mouse_genomes_project 17 91992150 91996791 - Six3os1 processed_transcript antisense MGP_C57BL6NJ_T0102908.1 MGP_C57BL6NJ_G0040702.1 mouse_genomes_project 17 19660488 19661340 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100072.1 MGP_C57BL6NJ_G0038118.1 mouse_genomes_project 17 29606137 29606309 - Gm23887 snRNA snRNA MGP_C57BL6NJ_T0003941.1 MGP_C57BL6NJ_G0003532.1 mouse_genomes_project 17 92714148 92716163 - 2010106C02Rik antisense antisense MGP_C57BL6NJ_T0048930.1 MGP_C57BL6NJ_G0024407.1 mouse_genomes_project 17 76057241 76077338 - MGP_C57BL6NJ_P0048930 Myl12b protein_coding protein_coding MGP_C57BL6NJ_T0048931.1 MGP_C57BL6NJ_G0024407.1 mouse_genomes_project 17 76057592 76059288 - Myl12b protein_coding retained_intron MGP_C57BL6NJ_T0048932.1 MGP_C57BL6NJ_G0024407.1 mouse_genomes_project 17 76060257 76077081 - Myl12b protein_coding retained_intron MGP_C57BL6NJ_T0046840.1 MGP_C57BL6NJ_G0023820.1 mouse_genomes_project 17 27360682 27371210 - MGP_C57BL6NJ_P0046840 Bak1 protein_coding protein_coding MGP_C57BL6NJ_T0046841.1 MGP_C57BL6NJ_G0023820.1 mouse_genomes_project 17 27360684 27370779 - MGP_C57BL6NJ_P0046841 Bak1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046842.1 MGP_C57BL6NJ_G0023820.1 mouse_genomes_project 17 27361538 27365198 - MGP_C57BL6NJ_P0046842 Bak1 protein_coding protein_coding MGP_C57BL6NJ_T0046843.1 MGP_C57BL6NJ_G0023820.1 mouse_genomes_project 17 27364987 27370788 - Bak1 protein_coding processed_transcript MGP_C57BL6NJ_T0007153.1 MGP_C57BL6NJ_G0005883.1 mouse_genomes_project 17 89216768 89218496 + Gm29052 lincRNA lincRNA MGP_C57BL6NJ_T0001128.1 MGP_C57BL6NJ_G0001034.1 mouse_genomes_project 17 76505478 76509176 - TEC TEC MGP_C57BL6NJ_T0046875.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28062301 28067833 - MGP_C57BL6NJ_P0046875 Rps10 protein_coding protein_coding MGP_C57BL6NJ_T0046876.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28062303 28072190 - MGP_C57BL6NJ_P0046876 Rps10 protein_coding protein_coding MGP_C57BL6NJ_T0046877.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28062304 28067797 - MGP_C57BL6NJ_P0046877 Rps10 protein_coding protein_coding MGP_C57BL6NJ_T0046878.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28062344 28067032 - MGP_C57BL6NJ_P0046878 Rps10 protein_coding protein_coding MGP_C57BL6NJ_T0046879.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28062909 28067833 - Rps10 protein_coding processed_transcript MGP_C57BL6NJ_T0046880.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28063541 28066811 - Rps10 protein_coding retained_intron MGP_C57BL6NJ_T0046881.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28063837 28067786 - Rps10 protein_coding retained_intron MGP_C57BL6NJ_T0046882.1 MGP_C57BL6NJ_G0023829.1 mouse_genomes_project 17 28066034 28067801 - Rps10 protein_coding processed_transcript MGP_C57BL6NJ_T0003943.1 MGP_C57BL6NJ_G0003534.1 mouse_genomes_project 17 93872771 93874995 - 0610012D04Rik antisense antisense MGP_C57BL6NJ_T0046146.1 MGP_C57BL6NJ_G0023624.1 mouse_genomes_project 17 20067387 20068308 + MGP_C57BL6NJ_P0046146 Vmn1r229 protein_coding protein_coding MGP_C57BL6NJ_T0048803.1 MGP_C57BL6NJ_G0024372.1 mouse_genomes_project 17 63002764 63008656 - Pdzph1 protein_coding retained_intron MGP_C57BL6NJ_T0048804.1 MGP_C57BL6NJ_G0024372.1 mouse_genomes_project 17 63002764 63119547 - MGP_C57BL6NJ_P0048804 Pdzph1 protein_coding protein_coding MGP_C57BL6NJ_T0048805.1 MGP_C57BL6NJ_G0024372.1 mouse_genomes_project 17 63002926 63018018 - MGP_C57BL6NJ_P0048805 Pdzph1 protein_coding protein_coding MGP_C57BL6NJ_T0047569.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 35998701 36006137 + MGP_C57BL6NJ_P0047569 Agpat1 protein_coding protein_coding MGP_C57BL6NJ_T0047570.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 35999283 36005836 + MGP_C57BL6NJ_P0047570 Agpat1 protein_coding protein_coding MGP_C57BL6NJ_T0047571.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36000300 36007886 + MGP_C57BL6NJ_P0047571 Agpat1 protein_coding protein_coding MGP_C57BL6NJ_T0047572.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36000300 36006883 + MGP_C57BL6NJ_P0047572 Agpat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047573.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36000412 36007331 + MGP_C57BL6NJ_P0047573 Agpat1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047574.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36003453 36007885 + MGP_C57BL6NJ_P0047574 Agpat1 protein_coding protein_coding MGP_C57BL6NJ_T0047575.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36004044 36007855 + MGP_C57BL6NJ_P0047575 Agpat1 protein_coding protein_coding MGP_C57BL6NJ_T0047576.1 MGP_C57BL6NJ_G0023987.1 mouse_genomes_project 17 36004699 36005617 + Agpat1 protein_coding retained_intron MGP_C57BL6NJ_T0048435.1 MGP_C57BL6NJ_G0024241.1 mouse_genomes_project 17 50046268 50047458 - MGP_C57BL6NJ_P0048435 A330017A19Rik protein_coding protein_coding MGP_C57BL6NJ_T0047853.1 MGP_C57BL6NJ_G0024045.1 mouse_genomes_project 17 37166614 37168061 + MGP_C57BL6NJ_P0047853 Psors1c2 protein_coding protein_coding MGP_C57BL6NJ_T0100068.1 MGP_C57BL6NJ_G0038114.1 mouse_genomes_project 17 13213111 13213175 - Gm23352 snRNA snRNA MGP_C57BL6NJ_T0048104.1 MGP_C57BL6NJ_G0024099.1 mouse_genomes_project 17 39060929 39063742 - MGP_C57BL6NJ_P0048104 Olfr91 protein_coding protein_coding MGP_C57BL6NJ_T0011691.1 MGP_C57BL6NJ_G0009776.1 mouse_genomes_project 17 50157469 50157763 - Gm23657 misc_RNA misc_RNA MGP_C57BL6NJ_T0046368.1 MGP_C57BL6NJ_G0023709.1 mouse_genomes_project 17 24471879 24483384 - MGP_C57BL6NJ_P0046368 E4f1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046369.1 MGP_C57BL6NJ_G0023709.1 mouse_genomes_project 17 24471899 24483419 - MGP_C57BL6NJ_P0046369 E4f1 protein_coding protein_coding MGP_C57BL6NJ_T0049108.1 MGP_C57BL6NJ_G0024473.1 mouse_genomes_project 17 87395242 87679989 - MGP_C57BL6NJ_P0049108 Slc8a1 protein_coding protein_coding MGP_C57BL6NJ_T0049109.1 MGP_C57BL6NJ_G0024473.1 mouse_genomes_project 17 87395242 87679989 - MGP_C57BL6NJ_P0049109 Slc8a1 protein_coding protein_coding MGP_C57BL6NJ_T0049110.1 MGP_C57BL6NJ_G0024473.1 mouse_genomes_project 17 87395242 87679989 - MGP_C57BL6NJ_P0049110 Slc8a1 protein_coding protein_coding MGP_C57BL6NJ_T0047082.1 MGP_C57BL6NJ_G0023871.1 mouse_genomes_project 17 30201693 30202203 - MGP_C57BL6NJ_P0047082 Gm17657 protein_coding protein_coding MGP_C57BL6NJ_T0047917.1 MGP_C57BL6NJ_G0024058.1 mouse_genomes_project 17 37529030 37533099 + MGP_C57BL6NJ_P0047917 Nrm protein_coding protein_coding MGP_C57BL6NJ_T0047918.1 MGP_C57BL6NJ_G0024058.1 mouse_genomes_project 17 37529050 37532360 + MGP_C57BL6NJ_P0047918 Nrm protein_coding protein_coding MGP_C57BL6NJ_T0047919.1 MGP_C57BL6NJ_G0024058.1 mouse_genomes_project 17 37529198 37532300 + MGP_C57BL6NJ_P0047919 Nrm protein_coding protein_coding MGP_C57BL6NJ_T0013564.1 MGP_C57BL6NJ_G0011609.1 mouse_genomes_project 17 38068541 38068854 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101373.1 MGP_C57BL6NJ_G0039419.1 mouse_genomes_project 17 36410583 36410646 - Gm25744 snoRNA snoRNA MGP_C57BL6NJ_T0049178.1 MGP_C57BL6NJ_G0024504.1 mouse_genomes_project 17 93595506 93625385 + MGP_C57BL6NJ_P0049178 Socs5 protein_coding protein_coding MGP_C57BL6NJ_T0047143.1 MGP_C57BL6NJ_G0023891.1 mouse_genomes_project 17 32073385 32095499 - MGP_C57BL6NJ_P0047143 Rsph1 protein_coding protein_coding MGP_C57BL6NJ_T0046095.1 MGP_C57BL6NJ_G0023589.1 mouse_genomes_project 17 16165359 16239631 + MGP_C57BL6NJ_P0046095 Lix1 protein_coding protein_coding MGP_C57BL6NJ_T0046096.1 MGP_C57BL6NJ_G0023589.1 mouse_genomes_project 17 16211933 16239631 + Lix1 protein_coding processed_transcript MGP_C57BL6NJ_T0048749.1 MGP_C57BL6NJ_G0024342.1 mouse_genomes_project 17 60735953 60743569 - MGP_C57BL6NJ_P0048749 Nrtn protein_coding protein_coding MGP_C57BL6NJ_T0100080.1 MGP_C57BL6NJ_G0038126.1 mouse_genomes_project 17 37353081 37353188 - Gm23864 snRNA snRNA MGP_C57BL6NJ_T0010419.1 MGP_C57BL6NJ_G0008504.1 mouse_genomes_project 17 36290935 36290998 - Mir6971 miRNA miRNA MGP_C57BL6NJ_T0048655.1 MGP_C57BL6NJ_G0024309.1 mouse_genomes_project 17 59876178 59882329 + MGP_C57BL6NJ_P0048655 Shd protein_coding protein_coding MGP_C57BL6NJ_T0048656.1 MGP_C57BL6NJ_G0024309.1 mouse_genomes_project 17 59876222 59882116 + MGP_C57BL6NJ_P0048656 Shd protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047522.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709004 35779720 + MGP_C57BL6NJ_P0047522 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0047523.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709005 35731018 + BC051142 protein_coding processed_transcript MGP_C57BL6NJ_T0047524.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709005 35761438 + MGP_C57BL6NJ_P0047524 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0047525.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709005 35779720 + MGP_C57BL6NJ_P0047525 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0047526.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709006 35734128 + BC051142 protein_coding retained_intron MGP_C57BL6NJ_T0047527.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35709025 35779720 + MGP_C57BL6NJ_P0047527 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0047528.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35730402 35755797 + MGP_C57BL6NJ_P0047528 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0047529.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35731013 35751344 + BC051142 protein_coding processed_transcript MGP_C57BL6NJ_T0047530.1 MGP_C57BL6NJ_G0023979.1 mouse_genomes_project 17 35731035 35734891 + MGP_C57BL6NJ_P0047530 BC051142 protein_coding protein_coding MGP_C57BL6NJ_T0013565.1 MGP_C57BL6NJ_G0011610.1 mouse_genomes_project 17 38072767 38073037 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048052.1 MGP_C57BL6NJ_G0024087.1 mouse_genomes_project 17 38818270 38826512 + MGP_C57BL6NJ_P0048052 Trim10 protein_coding protein_coding MGP_C57BL6NJ_T0047087.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30300351 30329938 + MGP_C57BL6NJ_P0047087 Rnf8 protein_coding protein_coding MGP_C57BL6NJ_T0047088.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30300383 30314078 + MGP_C57BL6NJ_P0047088 Rnf8 protein_coding protein_coding MGP_C57BL6NJ_T0047089.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30300415 30329861 + MGP_C57BL6NJ_P0047089 Rnf8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047091.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30300451 30305119 + Rnf8 protein_coding processed_transcript MGP_C57BL6NJ_T0047092.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30301697 30314111 + MGP_C57BL6NJ_P0047092 Rnf8 protein_coding protein_coding MGP_C57BL6NJ_T0047093.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30315673 30324190 + Rnf8 protein_coding retained_intron MGP_C57BL6NJ_T0047094.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30318582 30329809 + Rnf8 protein_coding retained_intron MGP_C57BL6NJ_T0047095.1 MGP_C57BL6NJ_G0023874.1 mouse_genomes_project 17 30322750 30329830 + Rnf8 protein_coding retained_intron MGP_C57BL6NJ_T0047058.1 MGP_C57BL6NJ_G0023866.1 mouse_genomes_project 17 29933039 29967837 + MGP_C57BL6NJ_P0047058 BC004004 protein_coding protein_coding MGP_C57BL6NJ_T0047059.1 MGP_C57BL6NJ_G0023866.1 mouse_genomes_project 17 29933094 29966477 + MGP_C57BL6NJ_P0047059 BC004004 protein_coding protein_coding MGP_C57BL6NJ_T0047060.1 MGP_C57BL6NJ_G0023866.1 mouse_genomes_project 17 29933202 29949364 + BC004004 protein_coding retained_intron MGP_C57BL6NJ_T0047061.1 MGP_C57BL6NJ_G0023866.1 mouse_genomes_project 17 29938300 29966481 + MGP_C57BL6NJ_P0047061 BC004004 protein_coding protein_coding MGP_C57BL6NJ_T0047062.1 MGP_C57BL6NJ_G0023866.1 mouse_genomes_project 17 29963343 29966481 + BC004004 protein_coding processed_transcript MGP_C57BL6NJ_T0048078.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38958063 38967612 + MGP_C57BL6NJ_P0048078 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048079.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959504 38966422 + MGP_C57BL6NJ_P0048079 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048080.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959547 38967612 + MGP_C57BL6NJ_P0048080 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048081.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959576 38963061 + MGP_C57BL6NJ_P0048081 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048082.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959591 38960837 + Zfp57 protein_coding retained_intron MGP_C57BL6NJ_T0048083.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959599 38960715 + Zfp57 protein_coding retained_intron MGP_C57BL6NJ_T0048084.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959618 38966803 + MGP_C57BL6NJ_P0048084 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048085.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959634 38963046 + MGP_C57BL6NJ_P0048085 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048086.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38959692 38966726 + MGP_C57BL6NJ_P0048086 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048087.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38960060 38967615 + MGP_C57BL6NJ_P0048087 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048088.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38960688 38967612 + MGP_C57BL6NJ_P0048088 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048089.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38961544 38966695 + MGP_C57BL6NJ_P0048089 Zfp57 protein_coding protein_coding MGP_C57BL6NJ_T0048090.1 MGP_C57BL6NJ_G0024096.1 mouse_genomes_project 17 38961625 38963228 + Zfp57 protein_coding retained_intron MGP_C57BL6NJ_T0007067.1 MGP_C57BL6NJ_G0005818.1 mouse_genomes_project 17 13669965 13679164 - Gm5091 lincRNA lincRNA MGP_C57BL6NJ_T0048463.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729717 50840027 + MGP_C57BL6NJ_P0048463 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048464.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729745 50839422 + MGP_C57BL6NJ_P0048464 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048465.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729822 50840584 + MGP_C57BL6NJ_P0048465 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048466.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729828 50814582 + Ccnd3 protein_coding retained_intron MGP_C57BL6NJ_T0048467.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729885 50814982 + Ccnd3 protein_coding retained_intron MGP_C57BL6NJ_T0048468.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729897 50834378 + MGP_C57BL6NJ_P0048468 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048469.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729906 50814754 + Ccnd3 protein_coding retained_intron MGP_C57BL6NJ_T0048470.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729907 50732577 + Ccnd3 protein_coding retained_intron MGP_C57BL6NJ_T0048471.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50729907 50840606 + MGP_C57BL6NJ_P0048471 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048472.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50834029 50840131 + Ccnd3 protein_coding retained_intron MGP_C57BL6NJ_T0048473.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50834122 50839536 + MGP_C57BL6NJ_P0048473 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048474.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50834248 50841654 + MGP_C57BL6NJ_P0048474 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048475.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50834906 50839452 + MGP_C57BL6NJ_P0048475 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0048476.1 MGP_C57BL6NJ_G0024253.1 mouse_genomes_project 17 50835349 50840820 + MGP_C57BL6NJ_P0048476 Ccnd3 protein_coding protein_coding MGP_C57BL6NJ_T0047013.1 MGP_C57BL6NJ_G0023856.1 mouse_genomes_project 17 29455661 29494820 + MGP_C57BL6NJ_P0047013 Pnpla1 protein_coding protein_coding MGP_C57BL6NJ_T0047014.1 MGP_C57BL6NJ_G0023856.1 mouse_genomes_project 17 29455661 29494820 + MGP_C57BL6NJ_P0047014 Pnpla1 protein_coding protein_coding MGP_C57BL6NJ_T0013566.1 MGP_C57BL6NJ_G0011611.1 mouse_genomes_project 17 38287230 38288304 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100093.1 MGP_C57BL6NJ_G0038139.1 mouse_genomes_project 17 64784812 64784975 + Gm23447 snRNA snRNA MGP_C57BL6NJ_T0047747.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36570064 36572630 + Abhd16a protein_coding retained_intron MGP_C57BL6NJ_T0047748.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36570092 36583773 + MGP_C57BL6NJ_P0047748 Abhd16a protein_coding protein_coding MGP_C57BL6NJ_T0047749.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36570115 36583742 + MGP_C57BL6NJ_P0047749 Abhd16a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047750.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36570671 36572770 + Abhd16a protein_coding retained_intron MGP_C57BL6NJ_T0047751.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36577137 36581726 + Abhd16a protein_coding processed_transcript MGP_C57BL6NJ_T0047752.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36580716 36581481 + Abhd16a protein_coding retained_intron MGP_C57BL6NJ_T0047753.1 MGP_C57BL6NJ_G0024021.1 mouse_genomes_project 17 36581639 36582816 + Abhd16a protein_coding retained_intron MGP_C57BL6NJ_T0048982.1 MGP_C57BL6NJ_G0024419.1 mouse_genomes_project 17 76962176 77045158 + MGP_C57BL6NJ_P0048982 Clip4 protein_coding protein_coding MGP_C57BL6NJ_T0048983.1 MGP_C57BL6NJ_G0024419.1 mouse_genomes_project 17 76962915 77045164 + MGP_C57BL6NJ_P0048983 Clip4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0102904.1 MGP_C57BL6NJ_G0040698.1 mouse_genomes_project 17 19250815 19251746 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101368.1 MGP_C57BL6NJ_G0039414.1 mouse_genomes_project 17 24785938 24786066 - Snora78 snoRNA snoRNA MGP_C57BL6NJ_T0049089.1 MGP_C57BL6NJ_G0024459.1 mouse_genomes_project 17 86061294 86120746 + MGP_C57BL6NJ_P0049089 Galm protein_coding protein_coding MGP_C57BL6NJ_T0049090.1 MGP_C57BL6NJ_G0024459.1 mouse_genomes_project 17 86080180 86119133 + MGP_C57BL6NJ_P0049090 Galm protein_coding protein_coding MGP_C57BL6NJ_T0048859.1 MGP_C57BL6NJ_G0024390.1 mouse_genomes_project 17 70911966 70920924 + MGP_C57BL6NJ_P0048859 Wash1 protein_coding protein_coding MGP_C57BL6NJ_T0048860.1 MGP_C57BL6NJ_G0024390.1 mouse_genomes_project 17 70912065 70920924 + MGP_C57BL6NJ_P0048860 Wash1 protein_coding protein_coding MGP_C57BL6NJ_T0046904.1 MGP_C57BL6NJ_G0023836.1 mouse_genomes_project 17 28378699 28534601 + MGP_C57BL6NJ_P0046904 Anks1 protein_coding protein_coding MGP_C57BL6NJ_T0046905.1 MGP_C57BL6NJ_G0023836.1 mouse_genomes_project 17 28378731 28534598 + MGP_C57BL6NJ_P0046905 Anks1 protein_coding protein_coding MGP_C57BL6NJ_T0046906.1 MGP_C57BL6NJ_G0023836.1 mouse_genomes_project 17 28378731 28534598 + MGP_C57BL6NJ_P0046906 Anks1 protein_coding protein_coding MGP_C57BL6NJ_T0046907.1 MGP_C57BL6NJ_G0023836.1 mouse_genomes_project 17 28479619 28534600 + Anks1 protein_coding processed_transcript MGP_C57BL6NJ_T0048226.1 MGP_C57BL6NJ_G0024187.1 mouse_genomes_project 17 47024770 47034272 - MGP_C57BL6NJ_P0048226 Enpp4 protein_coding protein_coding MGP_C57BL6NJ_T0048227.1 MGP_C57BL6NJ_G0024187.1 mouse_genomes_project 17 47024778 47034227 - MGP_C57BL6NJ_P0048227 Enpp4 protein_coding protein_coding MGP_C57BL6NJ_T0048659.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59910841 59917055 + MGP_C57BL6NJ_P0048659 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048660.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59914331 59925987 + MGP_C57BL6NJ_P0048660 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048661.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59914338 59925843 + MGP_C57BL6NJ_P0048661 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048662.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59914361 59925850 + MGP_C57BL6NJ_P0048662 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048663.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59914385 59917453 + Mpnd protein_coding retained_intron MGP_C57BL6NJ_T0048664.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59914463 59925811 + MGP_C57BL6NJ_P0048664 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048665.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59915063 59916798 + Mpnd protein_coding retained_intron MGP_C57BL6NJ_T0048666.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59915570 59924694 + MGP_C57BL6NJ_P0048666 Mpnd protein_coding protein_coding MGP_C57BL6NJ_T0048667.1 MGP_C57BL6NJ_G0024312.1 mouse_genomes_project 17 59917073 59920243 + Mpnd protein_coding retained_intron MGP_C57BL6NJ_T0046161.1 MGP_C57BL6NJ_G0023633.1 mouse_genomes_project 17 20663396 20664517 + MGP_C57BL6NJ_P0046161 Vmn1r236 protein_coding protein_coding MGP_C57BL6NJ_T0048188.1 MGP_C57BL6NJ_G0024167.1 mouse_genomes_project 17 43580077 43593825 - MGP_C57BL6NJ_P0048188 Glyatl3 protein_coding protein_coding MGP_C57BL6NJ_T0046806.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27180035 27189303 - MGP_C57BL6NJ_P0046806 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0046807.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27180042 27189147 - MGP_C57BL6NJ_P0046807 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0046808.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27180042 27188322 - MGP_C57BL6NJ_P0046808 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0046809.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27180106 27182066 - Daxx protein_coding processed_transcript MGP_C57BL6NJ_T0046810.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27180106 27189233 - MGP_C57BL6NJ_P0046810 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0046811.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27181625 27185998 - Daxx protein_coding processed_transcript MGP_C57BL6NJ_T0046812.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27186850 27188471 - Daxx protein_coding retained_intron MGP_C57BL6NJ_T0046813.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27187235 27189250 - MGP_C57BL6NJ_P0046813 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0046814.1 MGP_C57BL6NJ_G0023812.1 mouse_genomes_project 17 27187324 27189334 - MGP_C57BL6NJ_P0046814 Daxx protein_coding protein_coding MGP_C57BL6NJ_T0010431.1 MGP_C57BL6NJ_G0008516.1 mouse_genomes_project 17 49326236 49326325 + Mir693 miRNA miRNA MGP_C57BL6NJ_T0010401.1 MGP_C57BL6NJ_G0008486.1 mouse_genomes_project 17 26819928 26820054 - Gm22420 miRNA miRNA MGP_C57BL6NJ_T0048653.1 MGP_C57BL6NJ_G0024307.1 mouse_genomes_project 17 59858370 59862769 + MGP_C57BL6NJ_P0048653 Ebi3 protein_coding protein_coding MGP_C57BL6NJ_T0047085.1 MGP_C57BL6NJ_G0023873.1 mouse_genomes_project 17 30232156 30292051 + MGP_C57BL6NJ_P0047085 Tbc1d22b protein_coding protein_coding MGP_C57BL6NJ_T0047086.1 MGP_C57BL6NJ_G0023873.1 mouse_genomes_project 17 30254910 30292050 + Tbc1d22b protein_coding retained_intron MGP_C57BL6NJ_T0048647.1 MGP_C57BL6NJ_G0024302.1 mouse_genomes_project 17 59538939 59597613 - MGP_C57BL6NJ_P0048647 Pot1b protein_coding protein_coding MGP_C57BL6NJ_T0048460.1 MGP_C57BL6NJ_G0024251.1 mouse_genomes_project 17 50648651 50682149 + MGP_C57BL6NJ_P0048460 protein_coding protein_coding MGP_C57BL6NJ_T0048461.1 MGP_C57BL6NJ_G0024251.1 mouse_genomes_project 17 50648841 50682643 + MGP_C57BL6NJ_P0048461 protein_coding protein_coding MGP_C57BL6NJ_T0048151.1 MGP_C57BL6NJ_G0024139.1 mouse_genomes_project 17 40249398 40253243 + MGP_C57BL6NJ_P0048151 Olfr133 protein_coding protein_coding MGP_C57BL6NJ_T0048152.1 MGP_C57BL6NJ_G0024139.1 mouse_genomes_project 17 40252506 40253959 + MGP_C57BL6NJ_P0048152 Olfr133 protein_coding protein_coding MGP_C57BL6NJ_T0047063.1 MGP_C57BL6NJ_G0023867.1 mouse_genomes_project 17 29988006 29997758 + Pi16 protein_coding retained_intron MGP_C57BL6NJ_T0047064.1 MGP_C57BL6NJ_G0023867.1 mouse_genomes_project 17 29988326 29997765 + MGP_C57BL6NJ_P0047064 Pi16 protein_coding protein_coding MGP_C57BL6NJ_T0047065.1 MGP_C57BL6NJ_G0023867.1 mouse_genomes_project 17 29988344 29998883 + MGP_C57BL6NJ_P0047065 Pi16 protein_coding protein_coding MGP_C57BL6NJ_T0046209.1 MGP_C57BL6NJ_G0023659.1 mouse_genomes_project 17 22550087 22572227 - MGP_C57BL6NJ_P0046209 Zfp945 protein_coding protein_coding MGP_C57BL6NJ_T0046210.1 MGP_C57BL6NJ_G0023659.1 mouse_genomes_project 17 22552420 22566812 - Zfp945 protein_coding retained_intron MGP_C57BL6NJ_T0046211.1 MGP_C57BL6NJ_G0023659.1 mouse_genomes_project 17 22552420 22572227 - MGP_C57BL6NJ_P0046211 Zfp945 protein_coding protein_coding MGP_C57BL6NJ_T0046212.1 MGP_C57BL6NJ_G0023659.1 mouse_genomes_project 17 22555846 22572196 - MGP_C57BL6NJ_P0046212 Zfp945 protein_coding protein_coding MGP_C57BL6NJ_T0046213.1 MGP_C57BL6NJ_G0023659.1 mouse_genomes_project 17 22566821 22572227 - Zfp945 protein_coding retained_intron MGP_C57BL6NJ_T0048746.1 MGP_C57BL6NJ_G0024340.1 mouse_genomes_project 17 60690761 60694551 - MGP_C57BL6NJ_P0048746 Vmac protein_coding protein_coding MGP_C57BL6NJ_T0048747.1 MGP_C57BL6NJ_G0024340.1 mouse_genomes_project 17 60690761 60693773 - MGP_C57BL6NJ_P0048747 Vmac protein_coding protein_coding MGP_C57BL6NJ_T0047775.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36621713 36633858 + MGP_C57BL6NJ_P0047775 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047776.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36621713 36633841 + MGP_C57BL6NJ_P0047776 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047777.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36621740 36633842 + MGP_C57BL6NJ_P0047777 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047778.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36621763 36626845 + MGP_C57BL6NJ_P0047778 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047779.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622021 36629131 + MGP_C57BL6NJ_P0047779 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047780.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622045 36626908 + MGP_C57BL6NJ_P0047780 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047781.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622253 36625241 + MGP_C57BL6NJ_P0047781 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047782.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622265 36632885 + MGP_C57BL6NJ_P0047782 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047783.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622279 36633856 + MGP_C57BL6NJ_P0047783 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047784.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36622658 36625501 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0047785.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36625108 36626386 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0047786.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36626766 36627929 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0047787.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36627694 36628522 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0047788.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36628512 36629138 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0047789.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36632423 36633855 + MGP_C57BL6NJ_P0047789 Bag6 protein_coding protein_coding MGP_C57BL6NJ_T0047790.1 MGP_C57BL6NJ_G0024028.1 mouse_genomes_project 17 36632912 36633832 + Bag6 protein_coding retained_intron MGP_C57BL6NJ_T0049137.1 MGP_C57BL6NJ_G0024485.1 mouse_genomes_project 17 90910492 90948755 + MGP_C57BL6NJ_P0049137 Dync2li1 protein_coding protein_coding MGP_C57BL6NJ_T0048202.1 MGP_C57BL6NJ_G0024177.1 mouse_genomes_project 17 46109957 46177243 + MGP_C57BL6NJ_P0048202 Adgrf1 protein_coding protein_coding MGP_C57BL6NJ_T0048442.1 MGP_C57BL6NJ_G0024245.1 mouse_genomes_project 17 50184035 50184296 - MGP_C57BL6NJ_P0048442 Gm16494 protein_coding protein_coding MGP_C57BL6NJ_T0048503.1 MGP_C57BL6NJ_G0024262.1 mouse_genomes_project 17 50981671 50992572 + MGP_C57BL6NJ_P0048503 Pgc protein_coding protein_coding MGP_C57BL6NJ_T0048504.1 MGP_C57BL6NJ_G0024262.1 mouse_genomes_project 17 50981673 50988598 + MGP_C57BL6NJ_P0048504 Pgc protein_coding protein_coding MGP_C57BL6NJ_T0102952.1 MGP_C57BL6NJ_G0040746.1 mouse_genomes_project 17 38386425 38387645 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010411.1 MGP_C57BL6NJ_G0008496.1 mouse_genomes_project 17 29070708 29070834 + Gm25195 miRNA miRNA MGP_C57BL6NJ_T0013570.1 MGP_C57BL6NJ_G0011615.1 mouse_genomes_project 17 38690569 38695061 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046304.1 MGP_C57BL6NJ_G0023692.1 mouse_genomes_project 17 23959220 23963788 - MGP_C57BL6NJ_P0046304 Prss22 protein_coding protein_coding MGP_C57BL6NJ_T0048114.1 MGP_C57BL6NJ_G0024109.1 mouse_genomes_project 17 39296025 39297674 - MGP_C57BL6NJ_P0048114 Olfr99 protein_coding protein_coding MGP_C57BL6NJ_T0102967.1 MGP_C57BL6NJ_G0040761.1 mouse_genomes_project 17 39264282 39265675 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0010409.1 MGP_C57BL6NJ_G0008494.1 mouse_genomes_project 17 27752081 27752143 + Mir7217 miRNA miRNA MGP_C57BL6NJ_T0047746.1 MGP_C57BL6NJ_G0024020.1 mouse_genomes_project 17 36559107 36565119 - MGP_C57BL6NJ_P0047746 Ly6g6f protein_coding protein_coding MGP_C57BL6NJ_T0049221.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95225256 95288647 + MGP_C57BL6NJ_P0049221 Ppp1r21 protein_coding protein_coding MGP_C57BL6NJ_T0049222.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95225354 95239949 + Ppp1r21 protein_coding retained_intron MGP_C57BL6NJ_T0049223.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95261917 95265637 + Ppp1r21 protein_coding retained_intron MGP_C57BL6NJ_T0049224.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95275357 95277606 + Ppp1r21 protein_coding retained_intron MGP_C57BL6NJ_T0049225.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95275475 95279462 + Ppp1r21 protein_coding retained_intron MGP_C57BL6NJ_T0049226.1 MGP_C57BL6NJ_G0024516.1 mouse_genomes_project 17 95279011 95288645 + Ppp1r21 protein_coding retained_intron MGP_C57BL6NJ_T0048745.1 MGP_C57BL6NJ_G0024339.1 mouse_genomes_project 17 60648898 60688599 + MGP_C57BL6NJ_P0048745 Ranbp3 protein_coding protein_coding MGP_C57BL6NJ_T0018010.1 MGP_C57BL6NJ_G0015730.1 mouse_genomes_project 17 13490874 13505172 + Gm28869 processed_transcript processed_transcript MGP_C57BL6NJ_T0046789.1 MGP_C57BL6NJ_G0023808.1 mouse_genomes_project 17 26917153 26947031 + MGP_C57BL6NJ_P0046789 Atp6v0e protein_coding protein_coding MGP_C57BL6NJ_T0046790.1 MGP_C57BL6NJ_G0023808.1 mouse_genomes_project 17 26917169 26945338 + MGP_C57BL6NJ_P0046790 Atp6v0e protein_coding protein_coding MGP_C57BL6NJ_T0046567.1 MGP_C57BL6NJ_G0023756.1 mouse_genomes_project 17 25427028 25430259 + MGP_C57BL6NJ_P0046567 Prss28 protein_coding protein_coding MGP_C57BL6NJ_T0049065.1 MGP_C57BL6NJ_G0024450.1 mouse_genomes_project 17 84759426 84770374 + MGP_C57BL6NJ_P0049065 Ndufaf7 protein_coding protein_coding MGP_C57BL6NJ_T0000194.1 MGP_C57BL6NJ_G0000144.1 mouse_genomes_project 17 68595 69180 + MGP_C57BL6NJ_P0000194 Igkv17-121 IG_V_gene IG_V_gene MGP_C57BL6NJ_T0101382.1 MGP_C57BL6NJ_G0039428.1 mouse_genomes_project 17 67773717 67773834 + Gm24730 snoRNA snoRNA MGP_C57BL6NJ_T0048391.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49614699 49615199 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048392.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49614732 49667949 - MGP_C57BL6NJ_P0048392 Cul9 protein_coding protein_coding MGP_C57BL6NJ_T0048393.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49614737 49636042 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048394.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49614743 49667862 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048395.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49615923 49641133 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048396.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49633773 49638017 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048397.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49634836 49635948 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048398.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49634836 49640491 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048399.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49643880 49656491 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0048400.1 MGP_C57BL6NJ_G0024224.1 mouse_genomes_project 17 49645179 49656751 - Cul9 protein_coding retained_intron MGP_C57BL6NJ_T0046082.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 13998554 14019908 - MGP_C57BL6NJ_P0046082 protein_coding protein_coding MGP_C57BL6NJ_T0046083.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 14001256 14012267 - protein_coding retained_intron MGP_C57BL6NJ_T0046084.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 14001369 14011799 - protein_coding retained_intron MGP_C57BL6NJ_T0046085.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 14009619 14020925 - MGP_C57BL6NJ_P0046085 protein_coding protein_coding MGP_C57BL6NJ_T0046086.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 14016103 14020939 - protein_coding retained_intron MGP_C57BL6NJ_T0046087.1 MGP_C57BL6NJ_G0023586.1 mouse_genomes_project 17 14019400 14020907 - protein_coding processed_transcript MGP_C57BL6NJ_T0046526.1 MGP_C57BL6NJ_G0023746.1 mouse_genomes_project 17 25221111 25225620 + MGP_C57BL6NJ_P0046526 Ptx4 protein_coding protein_coding MGP_C57BL6NJ_T0046546.1 MGP_C57BL6NJ_G0023751.1 mouse_genomes_project 17 25344697 25354209 - MGP_C57BL6NJ_P0046546 Gnptg protein_coding protein_coding MGP_C57BL6NJ_T0046547.1 MGP_C57BL6NJ_G0023751.1 mouse_genomes_project 17 25345683 25354201 - MGP_C57BL6NJ_P0046547 Gnptg protein_coding protein_coding MGP_C57BL6NJ_T0046936.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28819713 28833558 + MGP_C57BL6NJ_P0046936 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046937.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28819730 28833558 + Fance protein_coding retained_intron MGP_C57BL6NJ_T0046938.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28819749 28833557 + MGP_C57BL6NJ_P0046938 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046939.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28819755 28833559 + MGP_C57BL6NJ_P0046939 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046940.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28819827 28833244 + MGP_C57BL6NJ_P0046940 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046941.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28823105 28827824 + MGP_C57BL6NJ_P0046941 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046942.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28823142 28824128 + Fance protein_coding retained_intron MGP_C57BL6NJ_T0046943.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28824038 28825258 + Fance protein_coding retained_intron MGP_C57BL6NJ_T0046944.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28824494 28825928 + Fance protein_coding processed_transcript MGP_C57BL6NJ_T0046945.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28824549 28833275 + MGP_C57BL6NJ_P0046945 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046946.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28824848 28827808 + Fance protein_coding retained_intron MGP_C57BL6NJ_T0046947.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28825105 28833440 + MGP_C57BL6NJ_P0046947 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046948.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28825334 28833490 + MGP_C57BL6NJ_P0046948 Fance protein_coding protein_coding MGP_C57BL6NJ_T0046949.1 MGP_C57BL6NJ_G0023842.1 mouse_genomes_project 17 28825443 28833558 + Fance protein_coding processed_transcript MGP_C57BL6NJ_T0048830.1 MGP_C57BL6NJ_G0024383.1 mouse_genomes_project 17 70400689 70405304 - MGP_C57BL6NJ_P0048830 Txndc2 protein_coding protein_coding MGP_C57BL6NJ_T0046612.1 MGP_C57BL6NJ_G0023768.1 mouse_genomes_project 17 25869419 25873125 + MGP_C57BL6NJ_P0046612 Rpusd1 protein_coding protein_coding MGP_C57BL6NJ_T0010392.1 MGP_C57BL6NJ_G0008477.1 mouse_genomes_project 17 23732723 23732802 + Mir5125 miRNA miRNA MGP_C57BL6NJ_T0046038.1 MGP_C57BL6NJ_G0023575.1 mouse_genomes_project 17 13250645 13346430 - MGP_C57BL6NJ_P0046038 Wdr27 protein_coding protein_coding MGP_C57BL6NJ_T0046039.1 MGP_C57BL6NJ_G0023575.1 mouse_genomes_project 17 13287084 13346430 - MGP_C57BL6NJ_P0046039 Wdr27 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010441.1 MGP_C57BL6NJ_G0008526.1 mouse_genomes_project 17 70257094 70257219 + Gm25731 miRNA miRNA MGP_C57BL6NJ_T0003930.1 MGP_C57BL6NJ_G0003523.1 mouse_genomes_project 17 56213855 56224263 - Gm27217 antisense antisense MGP_C57BL6NJ_T0047874.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37322069 37328079 - MGP_C57BL6NJ_P0047874 Gtf2h4 protein_coding protein_coding MGP_C57BL6NJ_T0047875.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37322077 37323100 - Gtf2h4 protein_coding retained_intron MGP_C57BL6NJ_T0047876.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37322078 37324177 - Gtf2h4 protein_coding retained_intron MGP_C57BL6NJ_T0047877.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37322080 37327958 - MGP_C57BL6NJ_P0047877 Gtf2h4 protein_coding protein_coding MGP_C57BL6NJ_T0047878.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37322169 37328043 - MGP_C57BL6NJ_P0047878 Gtf2h4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047879.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37324710 37328028 - Gtf2h4 protein_coding retained_intron MGP_C57BL6NJ_T0047880.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37325067 37328030 - MGP_C57BL6NJ_P0047880 Gtf2h4 protein_coding protein_coding MGP_C57BL6NJ_T0047881.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37325668 37327857 - MGP_C57BL6NJ_P0047881 Gtf2h4 protein_coding protein_coding MGP_C57BL6NJ_T0047882.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37326086 37328021 - Gtf2h4 protein_coding retained_intron MGP_C57BL6NJ_T0047883.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37326223 37327638 - Gtf2h4 protein_coding retained_intron MGP_C57BL6NJ_T0047884.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37326379 37327899 - Gtf2h4 protein_coding processed_transcript MGP_C57BL6NJ_T0047885.1 MGP_C57BL6NJ_G0024052.1 mouse_genomes_project 17 37326394 37327999 - MGP_C57BL6NJ_P0047885 Gtf2h4 protein_coding protein_coding MGP_C57BL6NJ_T0047481.1 MGP_C57BL6NJ_G0023965.1 mouse_genomes_project 17 35416094 35420014 + MGP_C57BL6NJ_P0047481 H2-DMa protein_coding protein_coding MGP_C57BL6NJ_T0047482.1 MGP_C57BL6NJ_G0023965.1 mouse_genomes_project 17 35417940 35419093 + H2-DMa protein_coding retained_intron MGP_C57BL6NJ_T0013581.1 MGP_C57BL6NJ_G0011626.1 mouse_genomes_project 17 40056390 40057040 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046797.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036520 27041360 + Bnip1 protein_coding retained_intron MGP_C57BL6NJ_T0046798.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036529 27041361 + Bnip1 protein_coding retained_intron MGP_C57BL6NJ_T0046799.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036531 27047521 + MGP_C57BL6NJ_P0046799 Bnip1 protein_coding protein_coding MGP_C57BL6NJ_T0046800.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036531 27047173 + MGP_C57BL6NJ_P0046800 Bnip1 protein_coding protein_coding MGP_C57BL6NJ_T0046801.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036559 27047512 + MGP_C57BL6NJ_P0046801 Bnip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046802.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27036573 27047069 + MGP_C57BL6NJ_P0046802 Bnip1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046803.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27041620 27045000 + Bnip1 protein_coding retained_intron MGP_C57BL6NJ_T0046804.1 MGP_C57BL6NJ_G0023810.1 mouse_genomes_project 17 27045766 27047557 + Bnip1 protein_coding retained_intron MGP_C57BL6NJ_T0048169.1 MGP_C57BL6NJ_G0024152.1 mouse_genomes_project 17 41991054 41998021 + MGP_C57BL6NJ_P0048169 protein_coding protein_coding MGP_C57BL6NJ_T0010448.1 MGP_C57BL6NJ_G0008533.1 mouse_genomes_project 17 97968452 97968513 + Gm27475 miRNA miRNA MGP_C57BL6NJ_T0048319.1 MGP_C57BL6NJ_G0024207.1 mouse_genomes_project 17 49211717 49226377 - MGP_C57BL6NJ_P0048319 Rsph9 protein_coding protein_coding MGP_C57BL6NJ_T0048323.1 MGP_C57BL6NJ_G0024207.1 mouse_genomes_project 17 49218953 49234057 - MGP_C57BL6NJ_P0048323 Rsph9 protein_coding protein_coding MGP_C57BL6NJ_T0048324.1 MGP_C57BL6NJ_G0024207.1 mouse_genomes_project 17 49224050 49226342 - Rsph9 protein_coding retained_intron MGP_C57BL6NJ_T0047926.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37551855 37566531 + MGP_C57BL6NJ_P0047926 Dhx16 protein_coding protein_coding MGP_C57BL6NJ_T0047927.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37551861 37566486 + MGP_C57BL6NJ_P0047927 Dhx16 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047928.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37559626 37561491 + Dhx16 protein_coding retained_intron MGP_C57BL6NJ_T0047929.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37559832 37560550 + Dhx16 protein_coding retained_intron MGP_C57BL6NJ_T0047930.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37559838 37560638 + Dhx16 protein_coding retained_intron MGP_C57BL6NJ_T0047931.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37559922 37561389 + Dhx16 protein_coding retained_intron MGP_C57BL6NJ_T0047932.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37561177 37566527 + MGP_C57BL6NJ_P0047932 Dhx16 protein_coding protein_coding MGP_C57BL6NJ_T0047933.1 MGP_C57BL6NJ_G0024060.1 mouse_genomes_project 17 37564593 37566414 + Dhx16 protein_coding retained_intron MGP_C57BL6NJ_T0046791.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 26967377 27031362 + MGP_C57BL6NJ_P0046791 Crebrf protein_coding protein_coding MGP_C57BL6NJ_T0046792.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 26967382 26994754 + MGP_C57BL6NJ_P0046792 Crebrf protein_coding protein_coding MGP_C57BL6NJ_T0046793.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 26967437 27016820 + MGP_C57BL6NJ_P0046793 Crebrf protein_coding protein_coding MGP_C57BL6NJ_T0046794.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 26967451 27014859 + MGP_C57BL6NJ_P0046794 Crebrf protein_coding protein_coding MGP_C57BL6NJ_T0046795.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 26994778 27010748 + Crebrf protein_coding retained_intron MGP_C57BL6NJ_T0046796.1 MGP_C57BL6NJ_G0023809.1 mouse_genomes_project 17 27010262 27012480 + Crebrf protein_coding retained_intron MGP_C57BL6NJ_T0049057.1 MGP_C57BL6NJ_G0024447.1 mouse_genomes_project 17 84702692 84725111 - MGP_C57BL6NJ_P0049057 Sult6b1 protein_coding protein_coding MGP_C57BL6NJ_T0049058.1 MGP_C57BL6NJ_G0024447.1 mouse_genomes_project 17 84703651 84713318 - Sult6b1 protein_coding processed_transcript MGP_C57BL6NJ_T0049059.1 MGP_C57BL6NJ_G0024447.1 mouse_genomes_project 17 84703820 84725018 - MGP_C57BL6NJ_P0049059 Sult6b1 protein_coding protein_coding MGP_C57BL6NJ_T0049060.1 MGP_C57BL6NJ_G0024447.1 mouse_genomes_project 17 84703820 84725018 - MGP_C57BL6NJ_P0049060 Sult6b1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0018003.1 MGP_C57BL6NJ_G0015727.1 mouse_genomes_project 17 6129473 6185724 + T2 processed_transcript processed_transcript MGP_C57BL6NJ_T0018004.1 MGP_C57BL6NJ_G0015727.1 mouse_genomes_project 17 6157794 6185724 + T2 processed_transcript processed_transcript MGP_C57BL6NJ_T0046432.1 MGP_C57BL6NJ_G0023726.1 mouse_genomes_project 17 24784378 24787905 + MGP_C57BL6NJ_P0046432 Rps2 protein_coding protein_coding MGP_C57BL6NJ_T0046433.1 MGP_C57BL6NJ_G0023726.1 mouse_genomes_project 17 24786372 24788114 + MGP_C57BL6NJ_P0046433 Rps2 protein_coding protein_coding MGP_C57BL6NJ_T0046434.1 MGP_C57BL6NJ_G0023726.1 mouse_genomes_project 17 24787633 24788110 + Rps2 protein_coding retained_intron MGP_C57BL6NJ_T0048710.1 MGP_C57BL6NJ_G0024332.1 mouse_genomes_project 17 60470711 60471947 - MGP_C57BL6NJ_P0048710 Znrf4 protein_coding protein_coding MGP_C57BL6NJ_T0047683.1 MGP_C57BL6NJ_G0024007.1 mouse_genomes_project 17 36417180 36433579 - MGP_C57BL6NJ_P0047683 Hspa1b protein_coding protein_coding MGP_C57BL6NJ_T0047534.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35933787 35982801 + MGP_C57BL6NJ_P0047534 Notch4 protein_coding protein_coding MGP_C57BL6NJ_T0047535.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35933817 35935136 + Notch4 protein_coding processed_transcript MGP_C57BL6NJ_T0047536.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35933856 35982529 + MGP_C57BL6NJ_P0047536 Notch4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047537.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35934655 35935097 + Notch4 protein_coding retained_intron MGP_C57BL6NJ_T0047538.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35960840 35965758 + Notch4 protein_coding processed_transcript MGP_C57BL6NJ_T0047539.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35967169 35980920 + MGP_C57BL6NJ_P0047539 Notch4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047540.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35967169 35980972 + MGP_C57BL6NJ_P0047540 Notch4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047541.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35967855 35979950 + Notch4 protein_coding retained_intron MGP_C57BL6NJ_T0047542.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35979962 35980921 + Notch4 protein_coding retained_intron MGP_C57BL6NJ_T0047543.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35980572 35981771 + Notch4 protein_coding retained_intron MGP_C57BL6NJ_T0047544.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35981242 35981799 + Notch4 protein_coding processed_transcript MGP_C57BL6NJ_T0047545.1 MGP_C57BL6NJ_G0023982.1 mouse_genomes_project 17 35981338 35982116 + Notch4 protein_coding processed_transcript MGP_C57BL6NJ_T0047808.1 MGP_C57BL6NJ_G0024033.1 mouse_genomes_project 17 36693784 36696411 - MGP_C57BL6NJ_P0047808 Tnf protein_coding protein_coding MGP_C57BL6NJ_T0047809.1 MGP_C57BL6NJ_G0024033.1 mouse_genomes_project 17 36693910 36696408 - MGP_C57BL6NJ_P0047809 Tnf protein_coding protein_coding MGP_C57BL6NJ_T0047259.1 MGP_C57BL6NJ_G0023917.1 mouse_genomes_project 17 33752924 33772998 - MGP_C57BL6NJ_P0047259 Zfp871 protein_coding protein_coding MGP_C57BL6NJ_T0047260.1 MGP_C57BL6NJ_G0023917.1 mouse_genomes_project 17 33759146 33773108 - Zfp871 protein_coding processed_transcript MGP_C57BL6NJ_T0046743.1 MGP_C57BL6NJ_G0023800.1 mouse_genomes_project 17 26407045 26411963 - MGP_C57BL6NJ_P0046743 Arhgdig protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046745.1 MGP_C57BL6NJ_G0023800.1 mouse_genomes_project 17 26410002 26412170 - MGP_C57BL6NJ_P0046745 Arhgdig protein_coding protein_coding MGP_C57BL6NJ_T0046746.1 MGP_C57BL6NJ_G0023800.1 mouse_genomes_project 17 26410216 26412189 - MGP_C57BL6NJ_P0046746 Arhgdig protein_coding protein_coding MGP_C57BL6NJ_T0046747.1 MGP_C57BL6NJ_G0023800.1 mouse_genomes_project 17 26410255 26418655 - Arhgdig protein_coding processed_transcript MGP_C57BL6NJ_T0046748.1 MGP_C57BL6NJ_G0023800.1 mouse_genomes_project 17 26410310 26411964 - Arhgdig protein_coding retained_intron MGP_C57BL6NJ_T0047270.1 MGP_C57BL6NJ_G0023921.1 mouse_genomes_project 17 33918217 33931561 - MGP_C57BL6NJ_P0047270 Cyp4f14 protein_coding protein_coding MGP_C57BL6NJ_T0047271.1 MGP_C57BL6NJ_G0023921.1 mouse_genomes_project 17 33918217 33931306 - MGP_C57BL6NJ_P0047271 Cyp4f14 protein_coding protein_coding MGP_C57BL6NJ_T0047727.1 MGP_C57BL6NJ_G0024014.1 mouse_genomes_project 17 36527313 36535511 + MGP_C57BL6NJ_P0047727 Clic1 protein_coding protein_coding MGP_C57BL6NJ_T0047728.1 MGP_C57BL6NJ_G0024014.1 mouse_genomes_project 17 36529521 36532566 + Clic1 protein_coding retained_intron MGP_C57BL6NJ_T0003866.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10797737 10927909 + antisense antisense MGP_C57BL6NJ_T0003867.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10797756 10890900 + antisense antisense MGP_C57BL6NJ_T0003868.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10797800 10875948 + antisense antisense MGP_C57BL6NJ_T0003869.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10797811 10875108 + antisense antisense MGP_C57BL6NJ_T0003870.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10797824 10890801 + antisense antisense MGP_C57BL6NJ_T0003871.1 MGP_C57BL6NJ_G0003477.1 mouse_genomes_project 17 10876321 10890985 + antisense antisense MGP_C57BL6NJ_T0013582.1 MGP_C57BL6NJ_G0011627.1 mouse_genomes_project 17 40176651 40177513 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047049.1 MGP_C57BL6NJ_G0023864.1 mouse_genomes_project 17 29806426 29897720 - MGP_C57BL6NJ_P0047049 Cpne5 protein_coding protein_coding MGP_C57BL6NJ_T0047050.1 MGP_C57BL6NJ_G0023864.1 mouse_genomes_project 17 29807792 29840594 - Cpne5 protein_coding processed_transcript MGP_C57BL6NJ_T0047051.1 MGP_C57BL6NJ_G0023864.1 mouse_genomes_project 17 29819313 29833199 - Cpne5 protein_coding processed_transcript MGP_C57BL6NJ_T0047052.1 MGP_C57BL6NJ_G0023864.1 mouse_genomes_project 17 29844824 29897682 - MGP_C57BL6NJ_P0047052 Cpne5 protein_coding protein_coding MGP_C57BL6NJ_T0047053.1 MGP_C57BL6NJ_G0023864.1 mouse_genomes_project 17 29876996 29897635 - Cpne5 protein_coding retained_intron MGP_C57BL6NJ_T0047405.1 MGP_C57BL6NJ_G0023953.1 mouse_genomes_project 17 35152389 35153958 - MGP_C57BL6NJ_P0047405 B3galt4 protein_coding protein_coding MGP_C57BL6NJ_T0046136.1 MGP_C57BL6NJ_G0023614.1 mouse_genomes_project 17 19492970 19510816 - MGP_C57BL6NJ_P0046136 Vmn2r106 protein_coding protein_coding MGP_C57BL6NJ_T0048433.1 MGP_C57BL6NJ_G0024239.1 mouse_genomes_project 17 49916222 49926270 - MGP_C57BL6NJ_P0048433 Rpl7l1 protein_coding protein_coding MGP_C57BL6NJ_T0047645.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305500 36308152 - MGP_C57BL6NJ_P0047645 Cfb protein_coding protein_coding MGP_C57BL6NJ_T0047646.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305510 36311641 - MGP_C57BL6NJ_P0047646 Cfb protein_coding protein_coding MGP_C57BL6NJ_T0047647.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305517 36307269 - MGP_C57BL6NJ_P0047647 Cfb protein_coding protein_coding MGP_C57BL6NJ_T0047648.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305538 36308437 - MGP_C57BL6NJ_P0047648 Cfb protein_coding protein_coding MGP_C57BL6NJ_T0047651.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305553 36311233 - MGP_C57BL6NJ_P0047651 Cfb protein_coding protein_coding MGP_C57BL6NJ_T0047652.1 MGP_C57BL6NJ_G0024000.1 mouse_genomes_project 17 36305700 36308168 - MGP_C57BL6NJ_P0047652 Cfb protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013622.1 MGP_C57BL6NJ_G0011667.1 mouse_genomes_project 17 91975641 91975981 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048140.1 MGP_C57BL6NJ_G0024130.1 mouse_genomes_project 17 39883006 39884128 + MGP_C57BL6NJ_P0048140 Olfr124 protein_coding protein_coding MGP_C57BL6NJ_T0013560.1 MGP_C57BL6NJ_G0011605.1 mouse_genomes_project 17 38040273 38040522 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048775.1 MGP_C57BL6NJ_G0024357.1 mouse_genomes_project 17 61091774 61098580 + MGP_C57BL6NJ_P0048775 Crb3 protein_coding protein_coding MGP_C57BL6NJ_T0048776.1 MGP_C57BL6NJ_G0024357.1 mouse_genomes_project 17 61094922 61098586 + MGP_C57BL6NJ_P0048776 Crb3 protein_coding protein_coding MGP_C57BL6NJ_T0048777.1 MGP_C57BL6NJ_G0024357.1 mouse_genomes_project 17 61094974 61098585 + MGP_C57BL6NJ_P0048777 Crb3 protein_coding protein_coding MGP_C57BL6NJ_T0048778.1 MGP_C57BL6NJ_G0024357.1 mouse_genomes_project 17 61094990 61098095 + MGP_C57BL6NJ_P0048778 Crb3 protein_coding protein_coding MGP_C57BL6NJ_T0048779.1 MGP_C57BL6NJ_G0024357.1 mouse_genomes_project 17 61095199 61097832 + MGP_C57BL6NJ_P0048779 Crb3 protein_coding protein_coding MGP_C57BL6NJ_T0001127.1 MGP_C57BL6NJ_G0001033.1 mouse_genomes_project 17 58015286 58015612 + TEC TEC MGP_C57BL6NJ_T0048403.1 MGP_C57BL6NJ_G0024227.1 mouse_genomes_project 17 49758012 49773397 - MGP_C57BL6NJ_P0048403 Klc4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046775.1 MGP_C57BL6NJ_G0023804.1 mouse_genomes_project 17 26640700 26668477 + MGP_C57BL6NJ_P0046775 Neurl1b protein_coding protein_coding MGP_C57BL6NJ_T0046776.1 MGP_C57BL6NJ_G0023804.1 mouse_genomes_project 17 26640700 26668477 + MGP_C57BL6NJ_P0046776 Neurl1b protein_coding protein_coding MGP_C57BL6NJ_T0046777.1 MGP_C57BL6NJ_G0023804.1 mouse_genomes_project 17 26640836 26674256 + MGP_C57BL6NJ_P0046777 Neurl1b protein_coding protein_coding MGP_C57BL6NJ_T0046324.1 MGP_C57BL6NJ_G0023698.1 mouse_genomes_project 17 24161736 24185080 - MGP_C57BL6NJ_P0046324 Gm43796 protein_coding protein_coding MGP_C57BL6NJ_T0048639.1 MGP_C57BL6NJ_G0024297.1 mouse_genomes_project 17 57575945 57595611 - MGP_C57BL6NJ_P0048639 Sult1c2 protein_coding protein_coding MGP_C57BL6NJ_T0046288.1 MGP_C57BL6NJ_G0023685.1 mouse_genomes_project 17 23782706 23787765 + MGP_C57BL6NJ_P0046288 Prss21 protein_coding protein_coding MGP_C57BL6NJ_T0048218.1 MGP_C57BL6NJ_G0024183.1 mouse_genomes_project 17 46526593 46551799 - MGP_C57BL6NJ_P0048218 Slc25a27 protein_coding protein_coding MGP_C57BL6NJ_T0102931.1 MGP_C57BL6NJ_G0040725.1 mouse_genomes_project 17 35898986 35915756 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046327.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24174307 24204302 - MGP_C57BL6NJ_P0046327 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046328.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24174308 24204329 - MGP_C57BL6NJ_P0046328 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046329.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24175787 24204282 - MGP_C57BL6NJ_P0046329 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046330.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177431 24204286 - MGP_C57BL6NJ_P0046330 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046331.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177604 24204281 - MGP_C57BL6NJ_P0046331 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046332.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177650 24204298 - MGP_C57BL6NJ_P0046332 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046333.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177661 24198724 - MGP_C57BL6NJ_P0046333 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046334.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177711 24204263 - MGP_C57BL6NJ_P0046334 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046335.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177711 24204290 - MGP_C57BL6NJ_P0046335 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046336.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177730 24204281 - MGP_C57BL6NJ_P0046336 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046337.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177731 24198724 - MGP_C57BL6NJ_P0046337 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046338.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24177878 24204292 - MGP_C57BL6NJ_P0046338 Tbc1d24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046339.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24179124 24179948 - Tbc1d24 protein_coding processed_transcript MGP_C57BL6NJ_T0046340.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24180322 24204249 - MGP_C57BL6NJ_P0046340 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0046341.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24188437 24204286 - Tbc1d24 protein_coding processed_transcript MGP_C57BL6NJ_T0046342.1 MGP_C57BL6NJ_G0023700.1 mouse_genomes_project 17 24202614 24208154 - MGP_C57BL6NJ_P0046342 Tbc1d24 protein_coding protein_coding MGP_C57BL6NJ_T0100096.1 MGP_C57BL6NJ_G0038142.1 mouse_genomes_project 17 78259939 78260046 + Gm23649 snRNA snRNA MGP_C57BL6NJ_T0048128.1 MGP_C57BL6NJ_G0024119.1 mouse_genomes_project 17 39628628 39630065 - MGP_C57BL6NJ_P0048128 Olfr114 protein_coding protein_coding MGP_C57BL6NJ_T0101369.1 MGP_C57BL6NJ_G0039415.1 mouse_genomes_project 17 24787034 24787168 + Snora64 snoRNA snoRNA MGP_C57BL6NJ_T0102199.1 MGP_C57BL6NJ_G0040211.1 mouse_genomes_project 17 75949804 75950291 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0049134.1 MGP_C57BL6NJ_G0024482.1 mouse_genomes_project 17 90438622 90441565 - MGP_C57BL6NJ_P0049134 Zfp36l2 protein_coding protein_coding MGP_C57BL6NJ_T0047855.1 MGP_C57BL6NJ_G0024047.1 mouse_genomes_project 17 37204177 37205680 + MGP_C57BL6NJ_P0047855 2300002M23Rik protein_coding protein_coding MGP_C57BL6NJ_T0047856.1 MGP_C57BL6NJ_G0024047.1 mouse_genomes_project 17 37204212 37205658 + 2300002M23Rik protein_coding retained_intron MGP_C57BL6NJ_T0046121.1 MGP_C57BL6NJ_G0023599.1 mouse_genomes_project 17 16887285 16983760 + MGP_C57BL6NJ_P0046121 Vmn2r124 protein_coding protein_coding MGP_C57BL6NJ_T0047170.1 MGP_C57BL6NJ_G0023895.1 mouse_genomes_project 17 32375691 32388253 + MGP_C57BL6NJ_P0047170 Ndufv3 protein_coding protein_coding MGP_C57BL6NJ_T0047171.1 MGP_C57BL6NJ_G0023895.1 mouse_genomes_project 17 32375726 32384769 + Ndufv3 protein_coding processed_transcript MGP_C57BL6NJ_T0047172.1 MGP_C57BL6NJ_G0023895.1 mouse_genomes_project 17 32375734 32388256 + MGP_C57BL6NJ_P0047172 Ndufv3 protein_coding protein_coding MGP_C57BL6NJ_T0047173.1 MGP_C57BL6NJ_G0023895.1 mouse_genomes_project 17 32375761 32384172 + MGP_C57BL6NJ_P0047173 Ndufv3 protein_coding protein_coding MGP_C57BL6NJ_T0047174.1 MGP_C57BL6NJ_G0023895.1 mouse_genomes_project 17 32386022 32388256 + Ndufv3 protein_coding processed_transcript MGP_C57BL6NJ_T0048626.1 MGP_C57BL6NJ_G0024292.1 mouse_genomes_project 17 57067479 57140754 - MGP_C57BL6NJ_P0048626 Efhb protein_coding protein_coding MGP_C57BL6NJ_T0046279.1 MGP_C57BL6NJ_G0023682.1 mouse_genomes_project 17 23745849 23748233 - MGP_C57BL6NJ_P0046279 Prss33 protein_coding protein_coding MGP_C57BL6NJ_T0046280.1 MGP_C57BL6NJ_G0023682.1 mouse_genomes_project 17 23746229 23748229 - MGP_C57BL6NJ_P0046280 Prss33 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046281.1 MGP_C57BL6NJ_G0023682.1 mouse_genomes_project 17 23747157 23748546 - Prss33 protein_coding retained_intron MGP_C57BL6NJ_T0046548.1 MGP_C57BL6NJ_G0023752.1 mouse_genomes_project 17 25354254 25356883 + MGP_C57BL6NJ_P0046548 Tsr3 protein_coding protein_coding MGP_C57BL6NJ_T0046058.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13810562 13819453 - MGP_C57BL6NJ_P0046058 Dll1 protein_coding protein_coding MGP_C57BL6NJ_T0046059.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13810733 13811599 - Dll1 protein_coding retained_intron MGP_C57BL6NJ_T0046060.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13813464 13815308 - Dll1 protein_coding processed_transcript MGP_C57BL6NJ_T0046061.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13813817 13817549 - Dll1 protein_coding processed_transcript MGP_C57BL6NJ_T0046062.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13815100 13818577 - Dll1 protein_coding retained_intron MGP_C57BL6NJ_T0046063.1 MGP_C57BL6NJ_G0023581.1 mouse_genomes_project 17 13818270 13823973 - Dll1 protein_coding processed_transcript MGP_C57BL6NJ_T0047910.1 MGP_C57BL6NJ_G0024056.1 mouse_genomes_project 17 37499977 37504313 - MGP_C57BL6NJ_P0047910 Tubb5 protein_coding protein_coding MGP_C57BL6NJ_T0047911.1 MGP_C57BL6NJ_G0024056.1 mouse_genomes_project 17 37501611 37503067 - Tubb5 protein_coding retained_intron MGP_C57BL6NJ_T0047912.1 MGP_C57BL6NJ_G0024056.1 mouse_genomes_project 17 37501907 37504215 - MGP_C57BL6NJ_P0047912 Tubb5 protein_coding protein_coding MGP_C57BL6NJ_T0047913.1 MGP_C57BL6NJ_G0024056.1 mouse_genomes_project 17 37502253 37504224 - Tubb5 protein_coding retained_intron MGP_C57BL6NJ_T0046258.1 MGP_C57BL6NJ_G0023675.1 mouse_genomes_project 17 23631574 23641974 + MGP_C57BL6NJ_P0046258 Pkmyt1 protein_coding protein_coding MGP_C57BL6NJ_T0046724.1 MGP_C57BL6NJ_G0023794.1 mouse_genomes_project 17 26275366 26284740 - MGP_C57BL6NJ_P0046724 Decr2 protein_coding protein_coding MGP_C57BL6NJ_T0046725.1 MGP_C57BL6NJ_G0023794.1 mouse_genomes_project 17 26277215 26278313 - Decr2 protein_coding processed_transcript MGP_C57BL6NJ_T0046726.1 MGP_C57BL6NJ_G0023794.1 mouse_genomes_project 17 26278029 26284740 - Decr2 protein_coding retained_intron MGP_C57BL6NJ_T0046727.1 MGP_C57BL6NJ_G0023794.1 mouse_genomes_project 17 26278486 26284730 - Decr2 protein_coding processed_transcript MGP_C57BL6NJ_T0046728.1 MGP_C57BL6NJ_G0023794.1 mouse_genomes_project 17 26281816 26284769 - Decr2 protein_coding processed_transcript MGP_C57BL6NJ_T0046448.1 MGP_C57BL6NJ_G0023731.1 mouse_genomes_project 17 24890097 24926250 + MGP_C57BL6NJ_P0046448 Meiob protein_coding protein_coding MGP_C57BL6NJ_T0007158.1 MGP_C57BL6NJ_G0005888.1 mouse_genomes_project 17 93777818 93784598 - 4833418N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007159.1 MGP_C57BL6NJ_G0005888.1 mouse_genomes_project 17 93777853 93785719 - 4833418N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007160.1 MGP_C57BL6NJ_G0005888.1 mouse_genomes_project 17 93778179 93785405 - 4833418N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0007161.1 MGP_C57BL6NJ_G0005888.1 mouse_genomes_project 17 93783162 93785684 - 4833418N02Rik lincRNA lincRNA MGP_C57BL6NJ_T0048130.1 MGP_C57BL6NJ_G0024121.1 mouse_genomes_project 17 39671537 39673553 - MGP_C57BL6NJ_P0048130 Olfr116 protein_coding protein_coding MGP_C57BL6NJ_T0048223.1 MGP_C57BL6NJ_G0024186.1 mouse_genomes_project 17 47007275 47015030 + MGP_C57BL6NJ_P0048223 Enpp5 protein_coding protein_coding MGP_C57BL6NJ_T0048224.1 MGP_C57BL6NJ_G0024186.1 mouse_genomes_project 17 47007307 47015022 + MGP_C57BL6NJ_P0048224 Enpp5 protein_coding protein_coding MGP_C57BL6NJ_T0048225.1 MGP_C57BL6NJ_G0024186.1 mouse_genomes_project 17 47007341 47015030 + MGP_C57BL6NJ_P0048225 Enpp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048131.1 MGP_C57BL6NJ_G0024122.1 mouse_genomes_project 17 39706289 39707076 - MGP_C57BL6NJ_P0048131 protein_coding protein_coding MGP_C57BL6NJ_T0013597.1 MGP_C57BL6NJ_G0011642.1 mouse_genomes_project 17 57648636 57648982 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048455.1 MGP_C57BL6NJ_G0024249.1 mouse_genomes_project 17 50621094 50622782 + MGP_C57BL6NJ_P0048455 Gm5814 protein_coding protein_coding MGP_C57BL6NJ_T0048578.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51857147 51872377 + MGP_C57BL6NJ_P0048578 Unc5cl protein_coding protein_coding MGP_C57BL6NJ_T0048579.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51864621 51872371 + MGP_C57BL6NJ_P0048579 Unc5cl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048580.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51864646 51954039 + MGP_C57BL6NJ_P0048580 Unc5cl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048581.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51864652 51867316 + MGP_C57BL6NJ_P0048581 Unc5cl protein_coding protein_coding MGP_C57BL6NJ_T0048582.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51864670 51872369 + MGP_C57BL6NJ_P0048582 Unc5cl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048583.1 MGP_C57BL6NJ_G0024280.1 mouse_genomes_project 17 51864690 51953932 + MGP_C57BL6NJ_P0048583 Unc5cl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048316.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49201679 49218593 + MGP_C57BL6NJ_P0048316 Mrps18a protein_coding protein_coding MGP_C57BL6NJ_T0048317.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49201688 49212810 + Mrps18a protein_coding retained_intron MGP_C57BL6NJ_T0048318.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49201689 49215548 + MGP_C57BL6NJ_P0048318 Mrps18a protein_coding protein_coding MGP_C57BL6NJ_T0048320.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49212485 49218553 + Mrps18a protein_coding processed_transcript MGP_C57BL6NJ_T0048321.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49214957 49217406 + Mrps18a protein_coding retained_intron MGP_C57BL6NJ_T0048322.1 MGP_C57BL6NJ_G0024206.1 mouse_genomes_project 17 49215140 49218476 + Mrps18a protein_coding retained_intron MGP_C57BL6NJ_T0001110.1 MGP_C57BL6NJ_G0001017.1 mouse_genomes_project 17 9190448 9195448 + TEC TEC MGP_C57BL6NJ_T0047757.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36597016 36603474 - MGP_C57BL6NJ_P0047757 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047758.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36597018 36601820 - MGP_C57BL6NJ_P0047758 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047759.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36597018 36603331 - MGP_C57BL6NJ_P0047759 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047760.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36597020 36603218 - MGP_C57BL6NJ_P0047760 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047761.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36597062 36600117 - MGP_C57BL6NJ_P0047761 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047762.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36599739 36600826 - Csnk2b protein_coding retained_intron MGP_C57BL6NJ_T0047763.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36599740 36604098 - MGP_C57BL6NJ_P0047763 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047764.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36600039 36603075 - MGP_C57BL6NJ_P0047764 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047765.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36601798 36604043 - MGP_C57BL6NJ_P0047765 Csnk2b protein_coding protein_coding MGP_C57BL6NJ_T0047766.1 MGP_C57BL6NJ_G0024024.1 mouse_genomes_project 17 36602562 36603481 - Csnk2b protein_coding retained_intron MGP_C57BL6NJ_T0007108.1 MGP_C57BL6NJ_G0005852.1 mouse_genomes_project 17 36651526 36653594 + Gm17705 lincRNA lincRNA MGP_C57BL6NJ_T0046160.1 MGP_C57BL6NJ_G0023632.1 mouse_genomes_project 17 20632358 20634795 + MGP_C57BL6NJ_P0046160 Vmn1r235 protein_coding protein_coding MGP_C57BL6NJ_T0010402.1 MGP_C57BL6NJ_G0008487.1 mouse_genomes_project 17 27236023 27236081 + Gm27775 miRNA miRNA MGP_C57BL6NJ_T0046318.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24152291 24161602 - Amdhd2 protein_coding retained_intron MGP_C57BL6NJ_T0046319.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24152291 24153198 - Amdhd2 protein_coding processed_transcript MGP_C57BL6NJ_T0046320.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24152291 24161638 - MGP_C57BL6NJ_P0046320 Amdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0046321.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24152293 24154051 - MGP_C57BL6NJ_P0046321 Amdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0046322.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24154800 24161182 - MGP_C57BL6NJ_P0046322 Amdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0046323.1 MGP_C57BL6NJ_G0023697.1 mouse_genomes_project 17 24160091 24161565 - Amdhd2 protein_coding retained_intron MGP_C57BL6NJ_T0049203.1 MGP_C57BL6NJ_G0024509.1 mouse_genomes_project 17 94193751 94209609 + MGP_C57BL6NJ_P0049203 Epcam protein_coding protein_coding MGP_C57BL6NJ_T0100078.1 MGP_C57BL6NJ_G0038124.1 mouse_genomes_project 17 36102210 36102317 - Gm24389 snRNA snRNA MGP_C57BL6NJ_T0049213.1 MGP_C57BL6NJ_G0024514.1 mouse_genomes_project 17 94617238 94704809 - MGP_C57BL6NJ_P0049213 Fbxo11 protein_coding protein_coding MGP_C57BL6NJ_T0049214.1 MGP_C57BL6NJ_G0024514.1 mouse_genomes_project 17 94617238 94702701 - MGP_C57BL6NJ_P0049214 Fbxo11 protein_coding protein_coding MGP_C57BL6NJ_T0049215.1 MGP_C57BL6NJ_G0024514.1 mouse_genomes_project 17 94617797 94639950 - MGP_C57BL6NJ_P0049215 Fbxo11 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049216.1 MGP_C57BL6NJ_G0024514.1 mouse_genomes_project 17 94619592 94627356 - Fbxo11 protein_coding retained_intron MGP_C57BL6NJ_T0102900.1 MGP_C57BL6NJ_G0040694.1 mouse_genomes_project 17 18576084 18577282 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048105.1 MGP_C57BL6NJ_G0024100.1 mouse_genomes_project 17 39087156 39088095 - MGP_C57BL6NJ_P0048105 Olfr92 protein_coding protein_coding MGP_C57BL6NJ_T0046503.1 MGP_C57BL6NJ_G0023741.1 mouse_genomes_project 17 25031932 25050582 - MGP_C57BL6NJ_P0046503 Hn1l protein_coding protein_coding MGP_C57BL6NJ_T0049066.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84771726 84856580 - MGP_C57BL6NJ_P0049066 Prkd3 protein_coding protein_coding MGP_C57BL6NJ_T0049067.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84771726 84849070 - MGP_C57BL6NJ_P0049067 Prkd3 protein_coding protein_coding MGP_C57BL6NJ_T0049068.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84772870 84856580 - MGP_C57BL6NJ_P0049068 Prkd3 protein_coding protein_coding MGP_C57BL6NJ_T0049069.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84773962 84844535 - MGP_C57BL6NJ_P0049069 Prkd3 protein_coding protein_coding MGP_C57BL6NJ_T0049070.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84791929 84816583 - Prkd3 protein_coding retained_intron MGP_C57BL6NJ_T0049071.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84794117 84856495 - MGP_C57BL6NJ_P0049071 Prkd3 protein_coding protein_coding MGP_C57BL6NJ_T0049072.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84794586 84844718 - Prkd3 protein_coding processed_transcript MGP_C57BL6NJ_T0049073.1 MGP_C57BL6NJ_G0024451.1 mouse_genomes_project 17 84845890 84856541 - Prkd3 protein_coding retained_intron MGP_C57BL6NJ_T0048629.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57260654 57330946 + Kat2b protein_coding processed_transcript MGP_C57BL6NJ_T0048630.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57260764 57381686 + MGP_C57BL6NJ_P0048630 Kat2b protein_coding protein_coding MGP_C57BL6NJ_T0048631.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57277695 57344996 + MGP_C57BL6NJ_P0048631 Kat2b protein_coding protein_coding MGP_C57BL6NJ_T0048632.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57351130 57381037 + MGP_C57BL6NJ_P0048632 Kat2b protein_coding protein_coding MGP_C57BL6NJ_T0048633.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57365685 57371277 + Kat2b protein_coding retained_intron MGP_C57BL6NJ_T0048634.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57365758 57371302 + Kat2b protein_coding retained_intron MGP_C57BL6NJ_T0048635.1 MGP_C57BL6NJ_G0024295.1 mouse_genomes_project 17 57365842 57378308 + MGP_C57BL6NJ_P0048635 Kat2b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046718.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26159443 26195008 - MGP_C57BL6NJ_P0046718 Rab11fip3 protein_coding protein_coding MGP_C57BL6NJ_T0046719.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26159443 26261365 - MGP_C57BL6NJ_P0046719 Rab11fip3 protein_coding protein_coding MGP_C57BL6NJ_T0046720.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26159452 26261597 - MGP_C57BL6NJ_P0046720 Rab11fip3 protein_coding protein_coding MGP_C57BL6NJ_T0046721.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26175352 26194966 - Rab11fip3 protein_coding retained_intron MGP_C57BL6NJ_T0046722.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26186827 26191567 - MGP_C57BL6NJ_P0046722 Rab11fip3 protein_coding protein_coding MGP_C57BL6NJ_T0046723.1 MGP_C57BL6NJ_G0023793.1 mouse_genomes_project 17 26211421 26261423 - Rab11fip3 protein_coding processed_transcript MGP_C57BL6NJ_T0047255.1 MGP_C57BL6NJ_G0023916.1 mouse_genomes_project 17 33646595 33663599 + MGP_C57BL6NJ_P0047255 Cyp4f15 protein_coding protein_coding MGP_C57BL6NJ_T0047256.1 MGP_C57BL6NJ_G0023916.1 mouse_genomes_project 17 33646636 33651223 + Cyp4f15 protein_coding retained_intron MGP_C57BL6NJ_T0047257.1 MGP_C57BL6NJ_G0023916.1 mouse_genomes_project 17 33646639 33658126 + Cyp4f15 protein_coding processed_transcript MGP_C57BL6NJ_T0047258.1 MGP_C57BL6NJ_G0023916.1 mouse_genomes_project 17 33646647 33663599 + MGP_C57BL6NJ_P0047258 Cyp4f15 protein_coding protein_coding MGP_C57BL6NJ_T0102958.1 MGP_C57BL6NJ_G0040752.1 mouse_genomes_project 17 38597498 38599079 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007076.1 MGP_C57BL6NJ_G0005826.1 mouse_genomes_project 17 23436848 23438393 + Gm26695 lincRNA lincRNA MGP_C57BL6NJ_T0098842.1 MGP_C57BL6NJ_G0036906.1 mouse_genomes_project 17 83933297 83933655 - pseudogene pseudogene MGP_C57BL6NJ_T0010423.1 MGP_C57BL6NJ_G0008508.1 mouse_genomes_project 17 36698878 36698961 - Mir6974 miRNA miRNA MGP_C57BL6NJ_T0011700.1 MGP_C57BL6NJ_G0009785.1 mouse_genomes_project 17 91993094 91993168 + Gm27610 misc_RNA misc_RNA MGP_C57BL6NJ_T0046172.1 MGP_C57BL6NJ_G0023641.1 mouse_genomes_project 17 21168922 21169181 + MGP_C57BL6NJ_P0046172 Gm10509 protein_coding protein_coding MGP_C57BL6NJ_T0003906.1 MGP_C57BL6NJ_G0003504.1 mouse_genomes_project 17 36838475 36849240 - antisense antisense MGP_C57BL6NJ_T0101384.1 MGP_C57BL6NJ_G0039430.1 mouse_genomes_project 17 76805240 76805325 + Snord92 snoRNA snoRNA MGP_C57BL6NJ_T0013623.1 MGP_C57BL6NJ_G0011668.1 mouse_genomes_project 17 93559534 93562829 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048173.1 MGP_C57BL6NJ_G0024156.1 mouse_genomes_project 17 42824482 42849532 - MGP_C57BL6NJ_P0048173 Crisp3 protein_coding protein_coding MGP_C57BL6NJ_T0047835.1 MGP_C57BL6NJ_G0024041.1 mouse_genomes_project 17 37052918 37063466 + MGP_C57BL6NJ_P0047835 H2-Q6 protein_coding protein_coding MGP_C57BL6NJ_T0048981.1 MGP_C57BL6NJ_G0024418.1 mouse_genomes_project 17 76920609 76931420 - MGP_C57BL6NJ_P0048981 BC027072 protein_coding protein_coding MGP_C57BL6NJ_T0010400.1 MGP_C57BL6NJ_G0008485.1 mouse_genomes_project 17 25981754 25981818 - Mir3082 miRNA miRNA MGP_C57BL6NJ_T0049103.1 MGP_C57BL6NJ_G0024469.1 mouse_genomes_project 17 86556352 86705000 - MGP_C57BL6NJ_P0049103 Map4k3 protein_coding protein_coding MGP_C57BL6NJ_T0049104.1 MGP_C57BL6NJ_G0024469.1 mouse_genomes_project 17 86556352 86705000 - MGP_C57BL6NJ_P0049104 Map4k3 protein_coding protein_coding MGP_C57BL6NJ_T0048668.1 MGP_C57BL6NJ_G0024313.1 mouse_genomes_project 17 59925949 59945834 - MGP_C57BL6NJ_P0048668 Sh3gl1 protein_coding protein_coding MGP_C57BL6NJ_T0048416.1 MGP_C57BL6NJ_G0024231.1 mouse_genomes_project 17 49804029 49810430 - MGP_C57BL6NJ_P0048416 Klhdc3 protein_coding protein_coding MGP_C57BL6NJ_T0048417.1 MGP_C57BL6NJ_G0024231.1 mouse_genomes_project 17 49804032 49810430 - MGP_C57BL6NJ_P0048417 Klhdc3 protein_coding protein_coding MGP_C57BL6NJ_T0046866.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28008762 28054265 - MGP_C57BL6NJ_P0046866 Nudt3 protein_coding protein_coding MGP_C57BL6NJ_T0046867.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28009954 28053764 - MGP_C57BL6NJ_P0046867 Nudt3 protein_coding protein_coding MGP_C57BL6NJ_T0046868.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28010085 28012700 - Nudt3 protein_coding retained_intron MGP_C57BL6NJ_T0046869.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28010168 28054063 - MGP_C57BL6NJ_P0046869 Nudt3 protein_coding protein_coding MGP_C57BL6NJ_T0046870.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28010213 28053193 - Nudt3 protein_coding processed_transcript MGP_C57BL6NJ_T0046871.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28010332 28041096 - Nudt3 protein_coding processed_transcript MGP_C57BL6NJ_T0046872.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28011341 28054063 - MGP_C57BL6NJ_P0046872 Nudt3 protein_coding protein_coding MGP_C57BL6NJ_T0046873.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28011414 28053644 - MGP_C57BL6NJ_P0046873 Nudt3 protein_coding protein_coding MGP_C57BL6NJ_T0046874.1 MGP_C57BL6NJ_G0023828.1 mouse_genomes_project 17 28025985 28054063 - Nudt3 protein_coding retained_intron MGP_C57BL6NJ_T0047017.1 MGP_C57BL6NJ_G0023858.1 mouse_genomes_project 17 29543432 29553906 - MGP_C57BL6NJ_P0047017 Pxt1 protein_coding protein_coding MGP_C57BL6NJ_T0100108.1 MGP_C57BL6NJ_G0038154.1 mouse_genomes_project 17 102138037 102138153 - Gm23102 snRNA snRNA MGP_C57BL6NJ_T0046127.1 MGP_C57BL6NJ_G0023605.1 mouse_genomes_project 17 17825703 18155656 + MGP_C57BL6NJ_P0046127 Vmn2r98 protein_coding protein_coding MGP_C57BL6NJ_T0098844.1 MGP_C57BL6NJ_G0036908.1 mouse_genomes_project 17 97278374 97278987 + pseudogene pseudogene MGP_C57BL6NJ_T0049217.1 MGP_C57BL6NJ_G0024515.1 mouse_genomes_project 17 95129904 95181242 + MGP_C57BL6NJ_P0049217 Foxn2 protein_coding protein_coding MGP_C57BL6NJ_T0049218.1 MGP_C57BL6NJ_G0024515.1 mouse_genomes_project 17 95129961 95148185 + MGP_C57BL6NJ_P0049218 Foxn2 protein_coding protein_coding MGP_C57BL6NJ_T0049219.1 MGP_C57BL6NJ_G0024515.1 mouse_genomes_project 17 95129984 95167815 + Foxn2 protein_coding retained_intron MGP_C57BL6NJ_T0049220.1 MGP_C57BL6NJ_G0024515.1 mouse_genomes_project 17 95130001 95177967 + MGP_C57BL6NJ_P0049220 Foxn2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045842.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2238825 2347996 + Arid1b protein_coding processed_transcript MGP_C57BL6NJ_T0045843.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2239445 2604407 + MGP_C57BL6NJ_P0045843 Arid1b protein_coding protein_coding MGP_C57BL6NJ_T0045844.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2239580 2608465 + MGP_C57BL6NJ_P0045844 Arid1b protein_coding protein_coding MGP_C57BL6NJ_T0045845.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2240927 2608465 + MGP_C57BL6NJ_P0045845 Arid1b protein_coding protein_coding MGP_C57BL6NJ_T0045846.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2240935 2348449 + Arid1b protein_coding retained_intron MGP_C57BL6NJ_T0045847.1 MGP_C57BL6NJ_G0023521.1 mouse_genomes_project 17 2288505 2382487 + Arid1b protein_coding retained_intron MGP_C57BL6NJ_T0048965.1 MGP_C57BL6NJ_G0024413.1 mouse_genomes_project 17 76608731 76610323 - Gm4707 protein_coding translated_processed_pseudogene MGP_C57BL6NJ_T0048966.1 MGP_C57BL6NJ_G0024413.1 mouse_genomes_project 17 76609429 76609705 - MGP_C57BL6NJ_P0048966 Gm4707 protein_coding protein_coding MGP_C57BL6NJ_T0048967.1 MGP_C57BL6NJ_G0024413.1 mouse_genomes_project 17 76610234 76610800 - MGP_C57BL6NJ_P0048967 Gm4707 protein_coding protein_coding MGP_C57BL6NJ_T0046669.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25995180 26012048 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046670.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25995180 26012140 - MGP_C57BL6NJ_P0046670 Wdr90 protein_coding protein_coding MGP_C57BL6NJ_T0046671.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25995182 26012133 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046672.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25995477 26012166 - MGP_C57BL6NJ_P0046672 Wdr90 protein_coding protein_coding MGP_C57BL6NJ_T0046673.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25995797 25996904 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046674.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 25998978 26002170 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046675.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 26000362 26002277 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046676.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 26002320 26004300 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046677.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 26003744 26012140 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046678.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 26004234 26005810 - Wdr90 protein_coding retained_intron MGP_C57BL6NJ_T0046679.1 MGP_C57BL6NJ_G0023783.1 mouse_genomes_project 17 26006294 26009891 - MGP_C57BL6NJ_P0046679 Wdr90 protein_coding protein_coding MGP_C57BL6NJ_T0046914.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28620699 28656487 + MGP_C57BL6NJ_P0046914 Scube3 protein_coding protein_coding MGP_C57BL6NJ_T0046915.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28620909 28652980 + MGP_C57BL6NJ_P0046915 Scube3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046916.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28632831 28653149 + Scube3 protein_coding processed_transcript MGP_C57BL6NJ_T0046917.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28633834 28651780 + MGP_C57BL6NJ_P0046917 Scube3 protein_coding protein_coding MGP_C57BL6NJ_T0046918.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28642397 28654662 + Scube3 protein_coding processed_transcript MGP_C57BL6NJ_T0046919.1 MGP_C57BL6NJ_G0023838.1 mouse_genomes_project 17 28647443 28649283 + Scube3 protein_coding retained_intron MGP_C57BL6NJ_T0102442.1 MGP_C57BL6NJ_G0040343.1 mouse_genomes_project 17 35793922 35846917 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102443.1 MGP_C57BL6NJ_G0040343.1 mouse_genomes_project 17 35815948 35823883 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102444.1 MGP_C57BL6NJ_G0040343.1 mouse_genomes_project 17 35820356 35822091 - transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0048390.1 MGP_C57BL6NJ_G0024223.1 mouse_genomes_project 17 49610916 49613746 + MGP_C57BL6NJ_P0048390 Dnph1 protein_coding protein_coding MGP_C57BL6NJ_T0048073.1 MGP_C57BL6NJ_G0024095.1 mouse_genomes_project 17 38941379 38946598 - H2-M5 protein_coding retained_intron MGP_C57BL6NJ_T0048074.1 MGP_C57BL6NJ_G0024095.1 mouse_genomes_project 17 38943919 38946565 - MGP_C57BL6NJ_P0048074 H2-M5 protein_coding protein_coding MGP_C57BL6NJ_T0048075.1 MGP_C57BL6NJ_G0024095.1 mouse_genomes_project 17 38944179 38946253 - MGP_C57BL6NJ_P0048075 H2-M5 protein_coding protein_coding MGP_C57BL6NJ_T0048076.1 MGP_C57BL6NJ_G0024095.1 mouse_genomes_project 17 38944179 38946253 - MGP_C57BL6NJ_P0048076 H2-M5 protein_coding protein_coding MGP_C57BL6NJ_T0048077.1 MGP_C57BL6NJ_G0024095.1 mouse_genomes_project 17 38944561 38946110 - MGP_C57BL6NJ_P0048077 H2-M5 protein_coding protein_coding MGP_C57BL6NJ_T0046441.1 MGP_C57BL6NJ_G0023728.1 mouse_genomes_project 17 24793752 24802946 + MGP_C57BL6NJ_P0046441 Rpl3l protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046442.1 MGP_C57BL6NJ_G0023728.1 mouse_genomes_project 17 24793924 24803033 + MGP_C57BL6NJ_P0046442 Rpl3l protein_coding protein_coding MGP_C57BL6NJ_T0046443.1 MGP_C57BL6NJ_G0023728.1 mouse_genomes_project 17 24794278 24800254 + MGP_C57BL6NJ_P0046443 Rpl3l protein_coding protein_coding MGP_C57BL6NJ_T0046444.1 MGP_C57BL6NJ_G0023728.1 mouse_genomes_project 17 24799574 24803033 + MGP_C57BL6NJ_P0046444 Rpl3l protein_coding protein_coding MGP_C57BL6NJ_T0046374.1 MGP_C57BL6NJ_G0023713.1 mouse_genomes_project 17 24523308 24549848 + MGP_C57BL6NJ_P0046374 Caskin1 protein_coding protein_coding MGP_C57BL6NJ_T0048826.1 MGP_C57BL6NJ_G0024380.1 mouse_genomes_project 17 69560451 69564006 - MGP_C57BL6NJ_P0048826 4930583I09Rik protein_coding protein_coding MGP_C57BL6NJ_T0046681.1 MGP_C57BL6NJ_G0023785.1 mouse_genomes_project 17 26030743 26032440 + MGP_C57BL6NJ_P0046681 Mettl26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046682.1 MGP_C57BL6NJ_G0023785.1 mouse_genomes_project 17 26030779 26032449 + MGP_C57BL6NJ_P0046682 Mettl26 protein_coding protein_coding MGP_C57BL6NJ_T0046683.1 MGP_C57BL6NJ_G0023785.1 mouse_genomes_project 17 26030780 26032449 + MGP_C57BL6NJ_P0046683 Mettl26 protein_coding protein_coding MGP_C57BL6NJ_T0046684.1 MGP_C57BL6NJ_G0023785.1 mouse_genomes_project 17 26030809 26041289 + MGP_C57BL6NJ_P0046684 Mettl26 protein_coding protein_coding MGP_C57BL6NJ_T0046685.1 MGP_C57BL6NJ_G0023785.1 mouse_genomes_project 17 26030809 26032277 + MGP_C57BL6NJ_P0046685 Mettl26 protein_coding protein_coding MGP_C57BL6NJ_T0003875.1 MGP_C57BL6NJ_G0003481.1 mouse_genomes_project 17 23767735 23773233 - Gm15947 antisense antisense MGP_C57BL6NJ_T0048648.1 MGP_C57BL6NJ_G0024303.1 mouse_genomes_project 17 59632634 59738169 + MGP_C57BL6NJ_P0048648 Adgre4 protein_coding protein_coding MGP_C57BL6NJ_T0047296.1 MGP_C57BL6NJ_G0023933.1 mouse_genomes_project 17 34454706 34493331 - MGP_C57BL6NJ_P0047296 Zfp81 protein_coding protein_coding MGP_C57BL6NJ_T0048729.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60546139 60557789 + protein_coding retained_intron MGP_C57BL6NJ_T0048730.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60546288 60567611 + MGP_C57BL6NJ_P0048730 protein_coding protein_coding MGP_C57BL6NJ_T0048731.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60546296 60554986 + MGP_C57BL6NJ_P0048731 protein_coding protein_coding MGP_C57BL6NJ_T0048732.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60546373 60567686 + MGP_C57BL6NJ_P0048732 protein_coding protein_coding MGP_C57BL6NJ_T0048733.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60550154 60562637 + MGP_C57BL6NJ_P0048733 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048734.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60555779 60557777 + protein_coding retained_intron MGP_C57BL6NJ_T0048735.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60559035 60567672 + protein_coding retained_intron MGP_C57BL6NJ_T0048736.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60562793 60565800 + protein_coding retained_intron MGP_C57BL6NJ_T0048737.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60564361 60565935 + protein_coding retained_intron MGP_C57BL6NJ_T0048738.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60565750 60567045 + protein_coding retained_intron MGP_C57BL6NJ_T0048739.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60566613 60567686 + protein_coding retained_intron MGP_C57BL6NJ_T0048740.1 MGP_C57BL6NJ_G0024334.1 mouse_genomes_project 17 60567131 60567666 + protein_coding retained_intron MGP_C57BL6NJ_T0048049.1 MGP_C57BL6NJ_G0024086.1 mouse_genomes_project 17 38809387 38815884 - MGP_C57BL6NJ_P0048049 Trim15 protein_coding protein_coding MGP_C57BL6NJ_T0048050.1 MGP_C57BL6NJ_G0024086.1 mouse_genomes_project 17 38809389 38815907 - MGP_C57BL6NJ_P0048050 Trim15 protein_coding protein_coding MGP_C57BL6NJ_T0048051.1 MGP_C57BL6NJ_G0024086.1 mouse_genomes_project 17 38810014 38815443 - MGP_C57BL6NJ_P0048051 Trim15 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045849.1 MGP_C57BL6NJ_G0023523.1 mouse_genomes_project 17 2682391 2683836 - MGP_C57BL6NJ_P0045849 Ldhal6b protein_coding protein_coding MGP_C57BL6NJ_T0046220.1 MGP_C57BL6NJ_G0023663.1 mouse_genomes_project 17 23304361 23348543 - MGP_C57BL6NJ_P0046220 protein_coding protein_coding MGP_C57BL6NJ_T0045836.1 MGP_C57BL6NJ_G0023516.1 mouse_genomes_project 17 156311 289644 + MGP_C57BL6NJ_P0045836 protein_coding protein_coding MGP_C57BL6NJ_T0046765.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465471 26494283 + MGP_C57BL6NJ_P0046765 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0046766.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465512 26500297 + MGP_C57BL6NJ_P0046766 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0046767.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465517 26491248 + MGP_C57BL6NJ_P0046767 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0046768.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465527 26496785 + MGP_C57BL6NJ_P0046768 Luc7l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046769.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465527 26496783 + MGP_C57BL6NJ_P0046769 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0046770.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465545 26494284 + Luc7l protein_coding retained_intron MGP_C57BL6NJ_T0046771.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465560 26494287 + MGP_C57BL6NJ_P0046771 Luc7l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046772.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465783 26479916 + MGP_C57BL6NJ_P0046772 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0046773.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26465946 26466814 + Luc7l protein_coding processed_transcript MGP_C57BL6NJ_T0046774.1 MGP_C57BL6NJ_G0023803.1 mouse_genomes_project 17 26480797 26496761 + MGP_C57BL6NJ_P0046774 Luc7l protein_coding protein_coding MGP_C57BL6NJ_T0100103.1 MGP_C57BL6NJ_G0038149.1 mouse_genomes_project 17 93160445 93160555 - Gm22235 snRNA snRNA MGP_C57BL6NJ_T0048847.1 MGP_C57BL6NJ_G0024387.1 mouse_genomes_project 17 70707642 70737519 - MGP_C57BL6NJ_P0048847 Twsg1 protein_coding protein_coding MGP_C57BL6NJ_T0048198.1 MGP_C57BL6NJ_G0024173.1 mouse_genomes_project 17 45461999 45502942 - MGP_C57BL6NJ_P0048198 Adgrf2 protein_coding protein_coding MGP_C57BL6NJ_T0018026.1 MGP_C57BL6NJ_G0015739.1 mouse_genomes_project 17 34937621 34939499 + Gm17251 processed_transcript processed_transcript MGP_C57BL6NJ_T0007124.1 MGP_C57BL6NJ_G0005865.1 mouse_genomes_project 17 49369105 49375658 + Gm26785 lincRNA lincRNA MGP_C57BL6NJ_T0049153.1 MGP_C57BL6NJ_G0024491.1 mouse_genomes_project 17 91400501 91428215 - MGP_C57BL6NJ_P0049153 Prepl protein_coding protein_coding MGP_C57BL6NJ_T0049154.1 MGP_C57BL6NJ_G0024491.1 mouse_genomes_project 17 91400501 91428215 - MGP_C57BL6NJ_P0049154 Prepl protein_coding protein_coding MGP_C57BL6NJ_T0045989.1 MGP_C57BL6NJ_G0023564.1 mouse_genomes_project 17 10983210 10987988 - MGP_C57BL6NJ_P0045989 Mrpl18 protein_coding protein_coding MGP_C57BL6NJ_T0045990.1 MGP_C57BL6NJ_G0023564.1 mouse_genomes_project 17 10985707 10987267 - Mrpl18 protein_coding processed_transcript MGP_C57BL6NJ_T0045991.1 MGP_C57BL6NJ_G0023564.1 mouse_genomes_project 17 10985812 10987746 - Mrpl18 protein_coding retained_intron MGP_C57BL6NJ_T0045992.1 MGP_C57BL6NJ_G0023564.1 mouse_genomes_project 17 10985856 10987845 - Mrpl18 protein_coding processed_transcript MGP_C57BL6NJ_T0045993.1 MGP_C57BL6NJ_G0023564.1 mouse_genomes_project 17 10987144 10987712 - Mrpl18 protein_coding retained_intron MGP_C57BL6NJ_T0048034.1 MGP_C57BL6NJ_G0024081.1 mouse_genomes_project 17 38533240 38536622 - MGP_C57BL6NJ_P0048034 H2-M9 protein_coding protein_coding MGP_C57BL6NJ_T0048035.1 MGP_C57BL6NJ_G0024081.1 mouse_genomes_project 17 38534361 38536622 - MGP_C57BL6NJ_P0048035 H2-M9 protein_coding protein_coding MGP_C57BL6NJ_T0046697.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26092136 26103770 - MGP_C57BL6NJ_P0046697 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046698.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26092137 26108611 - Pigq protein_coding retained_intron MGP_C57BL6NJ_T0046699.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26092137 26108776 - MGP_C57BL6NJ_P0046699 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046700.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26092137 26108663 - MGP_C57BL6NJ_P0046700 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046701.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26093205 26101409 - MGP_C57BL6NJ_P0046701 Pigq protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046702.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26093312 26096927 - Pigq protein_coding retained_intron MGP_C57BL6NJ_T0046703.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26093354 26102669 - MGP_C57BL6NJ_P0046703 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046704.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26095582 26096667 - Pigq protein_coding retained_intron MGP_C57BL6NJ_T0046705.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26100603 26108663 - Pigq protein_coding retained_intron MGP_C57BL6NJ_T0046706.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26101686 26108661 - MGP_C57BL6NJ_P0046706 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046707.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26103082 26108657 - Pigq protein_coding retained_intron MGP_C57BL6NJ_T0046708.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26103688 26109590 - MGP_C57BL6NJ_P0046708 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046709.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26103742 26111284 - MGP_C57BL6NJ_P0046709 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0046710.1 MGP_C57BL6NJ_G0023788.1 mouse_genomes_project 17 26103871 26109560 - MGP_C57BL6NJ_P0046710 Pigq protein_coding protein_coding MGP_C57BL6NJ_T0010430.1 MGP_C57BL6NJ_G0008515.1 mouse_genomes_project 17 42552398 42552508 + Gm26376 miRNA miRNA MGP_C57BL6NJ_T0007163.1 MGP_C57BL6NJ_G0005890.1 mouse_genomes_project 17 94788931 94804773 - Gm26612 lincRNA lincRNA MGP_C57BL6NJ_T0048205.1 MGP_C57BL6NJ_G0024179.1 mouse_genomes_project 17 46336450 46368793 - MGP_C57BL6NJ_P0048205 Mep1a protein_coding protein_coding MGP_C57BL6NJ_T0048206.1 MGP_C57BL6NJ_G0024179.1 mouse_genomes_project 17 46363931 46366518 - Mep1a protein_coding processed_transcript MGP_C57BL6NJ_T0048207.1 MGP_C57BL6NJ_G0024179.1 mouse_genomes_project 17 46368279 46368769 - Mep1a protein_coding retained_intron MGP_C57BL6NJ_T0007107.1 MGP_C57BL6NJ_G0005851.1 mouse_genomes_project 17 36048144 36051276 - Gm20461 lincRNA lincRNA MGP_C57BL6NJ_T0046359.1 MGP_C57BL6NJ_G0023705.1 mouse_genomes_project 17 24424455 24447250 + MGP_C57BL6NJ_P0046359 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0046348.1 MGP_C57BL6NJ_G0023702.1 mouse_genomes_project 17 24222813 24253296 - MGP_C57BL6NJ_P0046348 Ccnf protein_coding protein_coding MGP_C57BL6NJ_T0046145.1 MGP_C57BL6NJ_G0023623.1 mouse_genomes_project 17 20028746 20030189 - MGP_C57BL6NJ_P0046145 Vmn1r228 protein_coding protein_coding MGP_C57BL6NJ_T0048543.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51641781 51652847 + MGP_C57BL6NJ_P0048543 Treml4 protein_coding protein_coding MGP_C57BL6NJ_T0048544.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51641823 51651980 + MGP_C57BL6NJ_P0048544 Treml4 protein_coding protein_coding MGP_C57BL6NJ_T0048545.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51641823 51651980 + MGP_C57BL6NJ_P0048545 Treml4 protein_coding protein_coding MGP_C57BL6NJ_T0048546.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51641827 51652153 + MGP_C57BL6NJ_P0048546 Treml4 protein_coding protein_coding MGP_C57BL6NJ_T0048547.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51641859 51651987 + MGP_C57BL6NJ_P0048547 Treml4 protein_coding protein_coding MGP_C57BL6NJ_T0048548.1 MGP_C57BL6NJ_G0024271.1 mouse_genomes_project 17 51649925 51651999 + Treml4 protein_coding retained_intron MGP_C57BL6NJ_T0048301.1 MGP_C57BL6NJ_G0024203.1 mouse_genomes_project 17 48738656 48752511 + MGP_C57BL6NJ_P0048301 Mrpl14 protein_coding protein_coding MGP_C57BL6NJ_T0048302.1 MGP_C57BL6NJ_G0024203.1 mouse_genomes_project 17 48738691 48752194 + Mrpl14 protein_coding processed_transcript MGP_C57BL6NJ_T0048303.1 MGP_C57BL6NJ_G0024203.1 mouse_genomes_project 17 48749382 48752416 + Mrpl14 protein_coding processed_transcript MGP_C57BL6NJ_T0010395.1 MGP_C57BL6NJ_G0008480.1 mouse_genomes_project 17 24242119 24242183 - Mir6965 miRNA miRNA MGP_C57BL6NJ_T0048148.1 MGP_C57BL6NJ_G0024137.1 mouse_genomes_project 17 40181653 40188577 - MGP_C57BL6NJ_P0048148 Olfr131 protein_coding protein_coding MGP_C57BL6NJ_T0048149.1 MGP_C57BL6NJ_G0024137.1 mouse_genomes_project 17 40181653 40182683 - MGP_C57BL6NJ_P0048149 Olfr131 protein_coding protein_coding MGP_C57BL6NJ_T0046435.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788244 24788834 - Ndufb10 protein_coding retained_intron MGP_C57BL6NJ_T0046436.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788244 24789091 - Ndufb10 protein_coding retained_intron MGP_C57BL6NJ_T0046437.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788244 24790603 - Ndufb10 protein_coding retained_intron MGP_C57BL6NJ_T0046438.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788244 24790661 - MGP_C57BL6NJ_P0046438 Ndufb10 protein_coding protein_coding MGP_C57BL6NJ_T0046439.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788589 24790595 - MGP_C57BL6NJ_P0046439 Ndufb10 protein_coding protein_coding MGP_C57BL6NJ_T0046440.1 MGP_C57BL6NJ_G0023727.1 mouse_genomes_project 17 24788866 24790577 - Ndufb10 protein_coding processed_transcript MGP_C57BL6NJ_T0013571.1 MGP_C57BL6NJ_G0011616.1 mouse_genomes_project 17 39083946 39088958 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046408.1 MGP_C57BL6NJ_G0023717.1 mouse_genomes_project 17 24644415 24681154 - MGP_C57BL6NJ_P0046408 Tsc2 protein_coding protein_coding MGP_C57BL6NJ_T0046409.1 MGP_C57BL6NJ_G0023717.1 mouse_genomes_project 17 24644987 24681125 - MGP_C57BL6NJ_P0046409 Tsc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101372.1 MGP_C57BL6NJ_G0039418.1 mouse_genomes_project 17 36409522 36409588 - Snord52 snoRNA snoRNA MGP_C57BL6NJ_T0046299.1 MGP_C57BL6NJ_G0023691.1 mouse_genomes_project 17 23934845 23937950 - MGP_C57BL6NJ_P0046299 Prss30 protein_coding protein_coding MGP_C57BL6NJ_T0046300.1 MGP_C57BL6NJ_G0023691.1 mouse_genomes_project 17 23935558 23937521 - MGP_C57BL6NJ_P0046300 Prss30 protein_coding protein_coding MGP_C57BL6NJ_T0046301.1 MGP_C57BL6NJ_G0023691.1 mouse_genomes_project 17 23935785 23937894 - Prss30 protein_coding retained_intron MGP_C57BL6NJ_T0046302.1 MGP_C57BL6NJ_G0023691.1 mouse_genomes_project 17 23935809 23937398 - MGP_C57BL6NJ_P0046302 Prss30 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046303.1 MGP_C57BL6NJ_G0023691.1 mouse_genomes_project 17 23936385 23937918 - MGP_C57BL6NJ_P0046303 Prss30 protein_coding protein_coding MGP_C57BL6NJ_T0048250.1 MGP_C57BL6NJ_G0024194.1 mouse_genomes_project 17 48551063 48571691 + MGP_C57BL6NJ_P0048250 Tcte1 protein_coding protein_coding MGP_C57BL6NJ_T0100076.1 MGP_C57BL6NJ_G0038122.1 mouse_genomes_project 17 34904520 34904596 + Gm22943 snRNA snRNA MGP_C57BL6NJ_T0048751.1 MGP_C57BL6NJ_G0024344.1 mouse_genomes_project 17 60758315 60760274 + Prr22 protein_coding retained_intron MGP_C57BL6NJ_T0048752.1 MGP_C57BL6NJ_G0024344.1 mouse_genomes_project 17 60758341 60760200 + MGP_C57BL6NJ_P0048752 Prr22 protein_coding protein_coding MGP_C57BL6NJ_T0011684.1 MGP_C57BL6NJ_G0009769.1 mouse_genomes_project 17 32939914 32940185 + Gm25883 misc_RNA misc_RNA MGP_C57BL6NJ_T0045893.1 MGP_C57BL6NJ_G0023535.1 mouse_genomes_project 17 5249381 5320721 - MGP_C57BL6NJ_P0045893 Fndc1 protein_coding protein_coding MGP_C57BL6NJ_T0045894.1 MGP_C57BL6NJ_G0023535.1 mouse_genomes_project 17 5259596 5273946 - Fndc1 protein_coding processed_transcript MGP_C57BL6NJ_T0045895.1 MGP_C57BL6NJ_G0023535.1 mouse_genomes_project 17 5274230 5280606 - Fndc1 protein_coding retained_intron MGP_C57BL6NJ_T0045896.1 MGP_C57BL6NJ_G0023535.1 mouse_genomes_project 17 5295374 5350478 - MGP_C57BL6NJ_P0045896 Fndc1 protein_coding protein_coding MGP_C57BL6NJ_T0045897.1 MGP_C57BL6NJ_G0023535.1 mouse_genomes_project 17 5316607 5350478 - MGP_C57BL6NJ_P0045897 Fndc1 protein_coding protein_coding MGP_C57BL6NJ_T0048764.1 MGP_C57BL6NJ_G0024352.1 mouse_genomes_project 17 61007491 61008053 - MGP_C57BL6NJ_P0048764 Pspn protein_coding protein_coding MGP_C57BL6NJ_T0047627.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36288354 36299337 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047628.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36288370 36299337 - MGP_C57BL6NJ_P0047628 Skiv2l protein_coding protein_coding MGP_C57BL6NJ_T0047629.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36288375 36299319 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047630.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36288423 36299325 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047631.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36289656 36290255 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047632.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36289728 36291992 - MGP_C57BL6NJ_P0047632 Skiv2l protein_coding protein_coding MGP_C57BL6NJ_T0047633.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36290482 36293583 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047634.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36294153 36296320 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047635.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36294230 36295766 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047636.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36294366 36295158 - Skiv2l protein_coding retained_intron MGP_C57BL6NJ_T0047637.1 MGP_C57BL6NJ_G0023998.1 mouse_genomes_project 17 36295648 36299322 - MGP_C57BL6NJ_P0047637 Skiv2l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0102907.1 MGP_C57BL6NJ_G0040701.1 mouse_genomes_project 17 19639087 19639840 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100095.1 MGP_C57BL6NJ_G0038141.1 mouse_genomes_project 17 77738680 77738810 - Gm24736 snRNA snRNA MGP_C57BL6NJ_T0048305.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49098337 49113967 - MGP_C57BL6NJ_P0048305 protein_coding protein_coding MGP_C57BL6NJ_T0048306.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49098337 49113413 - MGP_C57BL6NJ_P0048306 protein_coding protein_coding MGP_C57BL6NJ_T0048307.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49098340 49113975 - MGP_C57BL6NJ_P0048307 protein_coding protein_coding MGP_C57BL6NJ_T0048308.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100021 49106457 - protein_coding retained_intron MGP_C57BL6NJ_T0048309.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100135 49113967 - MGP_C57BL6NJ_P0048309 protein_coding protein_coding MGP_C57BL6NJ_T0048310.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100198 49106474 - protein_coding retained_intron MGP_C57BL6NJ_T0048311.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100304 49102965 - protein_coding retained_intron MGP_C57BL6NJ_T0048312.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100423 49112954 - MGP_C57BL6NJ_P0048312 protein_coding protein_coding MGP_C57BL6NJ_T0048313.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100425 49106395 - protein_coding retained_intron MGP_C57BL6NJ_T0048314.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49100450 49112954 - MGP_C57BL6NJ_P0048314 protein_coding protein_coding MGP_C57BL6NJ_T0048315.1 MGP_C57BL6NJ_G0024205.1 mouse_genomes_project 17 49106788 49112954 - protein_coding retained_intron MGP_C57BL6NJ_T0010439.1 MGP_C57BL6NJ_G0008524.1 mouse_genomes_project 17 68974674 68974764 - Gm24194 miRNA miRNA MGP_C57BL6NJ_T0102936.1 MGP_C57BL6NJ_G0040730.1 mouse_genomes_project 17 36824886 36827382 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102897.1 MGP_C57BL6NJ_G0040691.1 mouse_genomes_project 17 18109361 18155491 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046823.1 MGP_C57BL6NJ_G0023816.1 mouse_genomes_project 17 27268293 27269685 - MGP_C57BL6NJ_P0046823 Cuta protein_coding protein_coding MGP_C57BL6NJ_T0003902.1 MGP_C57BL6NJ_G0003500.1 mouse_genomes_project 17 35495538 35501991 - Gm20496 antisense antisense MGP_C57BL6NJ_T0049080.1 MGP_C57BL6NJ_G0024457.1 mouse_genomes_project 17 85743196 85797850 - MGP_C57BL6NJ_P0049080 Atl2 protein_coding protein_coding MGP_C57BL6NJ_T0049081.1 MGP_C57BL6NJ_G0024457.1 mouse_genomes_project 17 85743203 85797852 - MGP_C57BL6NJ_P0049081 Atl2 protein_coding protein_coding MGP_C57BL6NJ_T0046249.1 MGP_C57BL6NJ_G0023671.1 mouse_genomes_project 17 23572319 23574322 - MGP_C57BL6NJ_P0046249 Tnfrsf12a protein_coding protein_coding MGP_C57BL6NJ_T0046250.1 MGP_C57BL6NJ_G0023671.1 mouse_genomes_project 17 23572319 23574322 - MGP_C57BL6NJ_P0046250 Tnfrsf12a protein_coding protein_coding MGP_C57BL6NJ_T0047649.1 MGP_C57BL6NJ_G0024001.1 mouse_genomes_project 17 36305538 36335884 - MGP_C57BL6NJ_P0047649 Gm20547 protein_coding protein_coding MGP_C57BL6NJ_T0047650.1 MGP_C57BL6NJ_G0024001.1 mouse_genomes_project 17 36305552 36321634 - MGP_C57BL6NJ_P0047650 Gm20547 protein_coding protein_coding MGP_C57BL6NJ_T0047519.1 MGP_C57BL6NJ_G0023977.1 mouse_genomes_project 17 35648590 35669391 + MGP_C57BL6NJ_P0047519 Btnl2 protein_coding protein_coding MGP_C57BL6NJ_T0047520.1 MGP_C57BL6NJ_G0023977.1 mouse_genomes_project 17 35648590 35669390 + MGP_C57BL6NJ_P0047520 Btnl2 protein_coding protein_coding MGP_C57BL6NJ_T0048929.1 MGP_C57BL6NJ_G0024406.1 mouse_genomes_project 17 76006058 76006547 + MGP_C57BL6NJ_P0048929 Gm16519 protein_coding protein_coding MGP_C57BL6NJ_T0102929.1 MGP_C57BL6NJ_G0040723.1 mouse_genomes_project 17 35827061 35827446 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049079.1 MGP_C57BL6NJ_G0024456.1 mouse_genomes_project 17 85588386 85596454 - MGP_C57BL6NJ_P0049079 Cyp1b1 protein_coding protein_coding MGP_C57BL6NJ_T0046196.1 MGP_C57BL6NJ_G0023652.1 mouse_genomes_project 17 21979802 21995580 + MGP_C57BL6NJ_P0046196 Zfp758 protein_coding protein_coding MGP_C57BL6NJ_T0046197.1 MGP_C57BL6NJ_G0023652.1 mouse_genomes_project 17 21979802 21995579 + MGP_C57BL6NJ_P0046197 Zfp758 protein_coding protein_coding MGP_C57BL6NJ_T0046198.1 MGP_C57BL6NJ_G0023652.1 mouse_genomes_project 17 21979804 21994555 + MGP_C57BL6NJ_P0046198 Zfp758 protein_coding protein_coding MGP_C57BL6NJ_T0046199.1 MGP_C57BL6NJ_G0023652.1 mouse_genomes_project 17 21979871 21995580 + MGP_C57BL6NJ_P0046199 Zfp758 protein_coding protein_coding MGP_C57BL6NJ_T0048135.1 MGP_C57BL6NJ_G0024126.1 mouse_genomes_project 17 39796778 39797771 + MGP_C57BL6NJ_P0048135 Olfr120 protein_coding protein_coding MGP_C57BL6NJ_T0048388.1 MGP_C57BL6NJ_G0024222.1 mouse_genomes_project 17 49554437 49600850 - MGP_C57BL6NJ_P0048388 Ttbk1 protein_coding protein_coding MGP_C57BL6NJ_T0048389.1 MGP_C57BL6NJ_G0024222.1 mouse_genomes_project 17 49572759 49600618 - MGP_C57BL6NJ_P0048389 Ttbk1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048811.1 MGP_C57BL6NJ_G0024375.1 mouse_genomes_project 17 67626581 68083087 - MGP_C57BL6NJ_P0048811 Fbxl17 protein_coding protein_coding MGP_C57BL6NJ_T0048812.1 MGP_C57BL6NJ_G0024375.1 mouse_genomes_project 17 67627854 68093526 - MGP_C57BL6NJ_P0048812 Fbxl17 protein_coding protein_coding MGP_C57BL6NJ_T0048813.1 MGP_C57BL6NJ_G0024375.1 mouse_genomes_project 17 67628184 68049139 - Fbxl17 protein_coding processed_transcript MGP_C57BL6NJ_T0048814.1 MGP_C57BL6NJ_G0024375.1 mouse_genomes_project 17 67629340 68044573 - Fbxl17 protein_coding processed_transcript MGP_C57BL6NJ_T0048815.1 MGP_C57BL6NJ_G0024375.1 mouse_genomes_project 17 67969398 68074695 - Fbxl17 protein_coding processed_transcript MGP_C57BL6NJ_T0013596.1 MGP_C57BL6NJ_G0011641.1 mouse_genomes_project 17 57522015 57522399 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049100.1 MGP_C57BL6NJ_G0024466.1 mouse_genomes_project 17 86327284 86327608 - MGP_C57BL6NJ_P0049100 Gm10190 protein_coding protein_coding MGP_C57BL6NJ_T0013610.1 MGP_C57BL6NJ_G0011655.1 mouse_genomes_project 17 74314898 74316062 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047518.1 MGP_C57BL6NJ_G0023976.1 mouse_genomes_project 17 35619969 35634307 + MGP_C57BL6NJ_P0047518 H2-Eb2 protein_coding protein_coding MGP_C57BL6NJ_T0102977.1 MGP_C57BL6NJ_G0040771.1 mouse_genomes_project 17 39476091 39476648 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046260.1 MGP_C57BL6NJ_G0023677.1 mouse_genomes_project 17 23646444 23651074 - MGP_C57BL6NJ_P0046260 Kremen2 protein_coding protein_coding MGP_C57BL6NJ_T0100074.1 MGP_C57BL6NJ_G0038120.1 mouse_genomes_project 17 31554729 31554833 - Gm24661 snRNA snRNA MGP_C57BL6NJ_T0007080.1 MGP_C57BL6NJ_G0005828.1 mouse_genomes_project 17 23699820 23703496 + D930048G16Rik lincRNA lincRNA MGP_C57BL6NJ_T0102935.1 MGP_C57BL6NJ_G0040729.1 mouse_genomes_project 17 36670744 36677257 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007082.1 MGP_C57BL6NJ_G0005830.1 mouse_genomes_project 17 26156222 26158877 + 1700022N22Rik lincRNA lincRNA MGP_C57BL6NJ_T0003874.1 MGP_C57BL6NJ_G0003480.1 mouse_genomes_project 17 23679278 23687074 + Gm16275 antisense antisense MGP_C57BL6NJ_T0047105.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30382229 30411142 - MGP_C57BL6NJ_P0047105 Ccdc167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047106.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30391667 30411118 - MGP_C57BL6NJ_P0047106 Ccdc167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047107.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30392413 30411142 - MGP_C57BL6NJ_P0047107 Ccdc167 protein_coding protein_coding MGP_C57BL6NJ_T0047108.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30394091 30411096 - MGP_C57BL6NJ_P0047108 Ccdc167 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047109.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30397424 30411145 - MGP_C57BL6NJ_P0047109 Ccdc167 protein_coding protein_coding MGP_C57BL6NJ_T0047110.1 MGP_C57BL6NJ_G0023877.1 mouse_genomes_project 17 30407065 30411097 - Ccdc167 protein_coding processed_transcript MGP_C57BL6NJ_T0047279.1 MGP_C57BL6NJ_G0023923.1 mouse_genomes_project 17 33979679 33991524 + MGP_C57BL6NJ_P0047279 Zfp472 protein_coding protein_coding MGP_C57BL6NJ_T0048120.1 MGP_C57BL6NJ_G0024114.1 mouse_genomes_project 17 39470130 39471168 + MGP_C57BL6NJ_P0048120 Olfr108 protein_coding protein_coding MGP_C57BL6NJ_T0007059.1 MGP_C57BL6NJ_G0005811.1 mouse_genomes_project 17 4238867 4268477 - Gm2885 lincRNA lincRNA MGP_C57BL6NJ_T0007118.1 MGP_C57BL6NJ_G0005861.1 mouse_genomes_project 17 40608696 40624110 - 4932415M13Rik lincRNA lincRNA MGP_C57BL6NJ_T0007119.1 MGP_C57BL6NJ_G0005861.1 mouse_genomes_project 17 40621993 40623991 - 4932415M13Rik lincRNA lincRNA MGP_C57BL6NJ_T0007103.1 MGP_C57BL6NJ_G0005847.1 mouse_genomes_project 17 34962664 34966805 - lincRNA lincRNA MGP_C57BL6NJ_T0048627.1 MGP_C57BL6NJ_G0024293.1 mouse_genomes_project 17 57157331 57189196 + MGP_C57BL6NJ_P0048627 Rab5a protein_coding protein_coding MGP_C57BL6NJ_T0010415.1 MGP_C57BL6NJ_G0008500.1 mouse_genomes_project 17 33315524 33315583 + Gm22201 miRNA miRNA MGP_C57BL6NJ_T0011693.1 MGP_C57BL6NJ_G0009778.1 mouse_genomes_project 17 65628412 65628708 + Gm23773 misc_RNA misc_RNA MGP_C57BL6NJ_T0047090.1 MGP_C57BL6NJ_G0023875.1 mouse_genomes_project 17 30300437 30397452 + MGP_C57BL6NJ_P0047090 Gm28043 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007087.1 MGP_C57BL6NJ_G0005835.1 mouse_genomes_project 17 28185428 28193866 + Gm15458 lincRNA lincRNA MGP_C57BL6NJ_T0102982.1 MGP_C57BL6NJ_G0040776.1 mouse_genomes_project 17 59734988 59735636 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048121.1 MGP_C57BL6NJ_G0024115.1 mouse_genomes_project 17 39496651 39497596 + MGP_C57BL6NJ_P0048121 Olfr109 protein_coding protein_coding MGP_C57BL6NJ_T0048200.1 MGP_C57BL6NJ_G0024175.1 mouse_genomes_project 17 45571344 45643100 - MGP_C57BL6NJ_P0048200 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0046805.1 MGP_C57BL6NJ_G0023811.1 mouse_genomes_project 17 27094305 27097207 - MGP_C57BL6NJ_P0046805 Nkx2-5 protein_coding protein_coding MGP_C57BL6NJ_T0003912.1 MGP_C57BL6NJ_G0003510.1 mouse_genomes_project 17 37699660 37751114 + A930015D03Rik antisense antisense MGP_C57BL6NJ_T0011687.1 MGP_C57BL6NJ_G0009772.1 mouse_genomes_project 17 38916330 38916406 - Gm27735 misc_RNA misc_RNA MGP_C57BL6NJ_T0046171.1 MGP_C57BL6NJ_G0023640.1 mouse_genomes_project 17 20996059 21017695 + MGP_C57BL6NJ_P0046171 Zfp948 protein_coding protein_coding MGP_C57BL6NJ_T0048367.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49405221 49427120 - MGP_C57BL6NJ_P0048367 Abcc10 protein_coding protein_coding MGP_C57BL6NJ_T0048368.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49405230 49427073 - MGP_C57BL6NJ_P0048368 Abcc10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048369.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49405233 49427076 - MGP_C57BL6NJ_P0048369 Abcc10 protein_coding protein_coding MGP_C57BL6NJ_T0048370.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49405421 49424877 - MGP_C57BL6NJ_P0048370 Abcc10 protein_coding protein_coding MGP_C57BL6NJ_T0048371.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49414816 49422743 - MGP_C57BL6NJ_P0048371 Abcc10 protein_coding protein_coding MGP_C57BL6NJ_T0048372.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49421968 49427094 - Abcc10 protein_coding retained_intron MGP_C57BL6NJ_T0048373.1 MGP_C57BL6NJ_G0024217.1 mouse_genomes_project 17 49423667 49427449 - Abcc10 protein_coding processed_transcript MGP_C57BL6NJ_T0046571.1 MGP_C57BL6NJ_G0023759.1 mouse_genomes_project 17 25491359 25492904 + MGP_C57BL6NJ_P0046571 Tpsb2 protein_coding protein_coding MGP_C57BL6NJ_T0049046.1 MGP_C57BL6NJ_G0024441.1 mouse_genomes_project 17 84147030 84188112 - MGP_C57BL6NJ_P0049046 Fez2 protein_coding protein_coding MGP_C57BL6NJ_T0049047.1 MGP_C57BL6NJ_G0024441.1 mouse_genomes_project 17 84147030 84188112 - MGP_C57BL6NJ_P0049047 Fez2 protein_coding protein_coding MGP_C57BL6NJ_T0048168.1 MGP_C57BL6NJ_G0024151.1 mouse_genomes_project 17 41530985 42609080 + MGP_C57BL6NJ_P0048168 Esp18 protein_coding protein_coding MGP_C57BL6NJ_T0045870.1 MGP_C57BL6NJ_G0023527.1 mouse_genomes_project 17 3364547 3404938 - MGP_C57BL6NJ_P0045870 Serac1 protein_coding protein_coding MGP_C57BL6NJ_T0045871.1 MGP_C57BL6NJ_G0023527.1 mouse_genomes_project 17 3366255 3372407 - Serac1 protein_coding processed_transcript MGP_C57BL6NJ_T0045872.1 MGP_C57BL6NJ_G0023527.1 mouse_genomes_project 17 3366417 3404924 - MGP_C57BL6NJ_P0045872 Serac1 protein_coding protein_coding MGP_C57BL6NJ_T0045873.1 MGP_C57BL6NJ_G0023527.1 mouse_genomes_project 17 3372378 3373740 - Serac1 protein_coding retained_intron MGP_C57BL6NJ_T0045874.1 MGP_C57BL6NJ_G0023527.1 mouse_genomes_project 17 3387182 3404930 - Serac1 protein_coding processed_transcript MGP_C57BL6NJ_T0046246.1 MGP_C57BL6NJ_G0023670.1 mouse_genomes_project 17 23570468 23572100 + MGP_C57BL6NJ_P0046246 Hcfc1r1 protein_coding protein_coding MGP_C57BL6NJ_T0046247.1 MGP_C57BL6NJ_G0023670.1 mouse_genomes_project 17 23570480 23572100 + MGP_C57BL6NJ_P0046247 Hcfc1r1 protein_coding protein_coding MGP_C57BL6NJ_T0046248.1 MGP_C57BL6NJ_G0023670.1 mouse_genomes_project 17 23570499 23572047 + MGP_C57BL6NJ_P0046248 Hcfc1r1 protein_coding protein_coding MGP_C57BL6NJ_T0046749.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413770 26422312 + Rgs11 protein_coding processed_transcript MGP_C57BL6NJ_T0046750.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413777 26422316 + MGP_C57BL6NJ_P0046750 Rgs11 protein_coding protein_coding MGP_C57BL6NJ_T0046751.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413781 26422321 + MGP_C57BL6NJ_P0046751 Rgs11 protein_coding protein_coding MGP_C57BL6NJ_T0046752.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413782 26414653 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046753.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413784 26414456 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046754.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413795 26422314 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046755.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413799 26414795 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046756.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413821 26417675 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046757.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26413831 26414917 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046758.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26418322 26422314 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0046759.1 MGP_C57BL6NJ_G0023801.1 mouse_genomes_project 17 26418710 26422312 + Rgs11 protein_coding retained_intron MGP_C57BL6NJ_T0049112.1 MGP_C57BL6NJ_G0024475.1 mouse_genomes_project 17 88656162 88656575 + MGP_C57BL6NJ_P0049112 Gm6594 protein_coding protein_coding MGP_C57BL6NJ_T0003922.1 MGP_C57BL6NJ_G0003517.1 mouse_genomes_project 17 48618799 48621057 + Gm17080 antisense antisense MGP_C57BL6NJ_T0011682.1 MGP_C57BL6NJ_G0009767.1 mouse_genomes_project 17 28982828 28983116 + Gm22146 misc_RNA misc_RNA MGP_C57BL6NJ_T0048882.1 MGP_C57BL6NJ_G0024396.1 mouse_genomes_project 17 72527944 72529703 - MGP_C57BL6NJ_P0048882 Lrrc30 protein_coding protein_coding MGP_C57BL6NJ_T0047081.1 MGP_C57BL6NJ_G0023870.1 mouse_genomes_project 17 30168766 30175969 + MGP_C57BL6NJ_P0047081 Pim1 protein_coding protein_coding MGP_C57BL6NJ_T0049098.1 MGP_C57BL6NJ_G0024464.1 mouse_genomes_project 17 86239260 86246351 + MGP_C57BL6NJ_P0049098 Morn2 protein_coding protein_coding MGP_C57BL6NJ_T0046205.1 MGP_C57BL6NJ_G0023655.1 mouse_genomes_project 17 22280083 23213968 + MGP_C57BL6NJ_P0046205 protein_coding protein_coding MGP_C57BL6NJ_T0048161.1 MGP_C57BL6NJ_G0024145.1 mouse_genomes_project 17 40538007 40541719 - MGP_C57BL6NJ_P0048161 Esp36 protein_coding protein_coding MGP_C57BL6NJ_T0048171.1 MGP_C57BL6NJ_G0024154.1 mouse_genomes_project 17 42429606 42433508 + MGP_C57BL6NJ_P0048171 Esp38 protein_coding protein_coding MGP_C57BL6NJ_T0007098.1 MGP_C57BL6NJ_G0005843.1 mouse_genomes_project 17 32418441 32420426 + 4833413E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007099.1 MGP_C57BL6NJ_G0005843.1 mouse_genomes_project 17 32419507 32420429 + 4833413E03Rik lincRNA lincRNA MGP_C57BL6NJ_T0046781.1 MGP_C57BL6NJ_G0023806.1 mouse_genomes_project 17 26775243 26777981 + MGP_C57BL6NJ_P0046781 Gm8225 protein_coding protein_coding MGP_C57BL6NJ_T0048401.1 MGP_C57BL6NJ_G0024225.1 mouse_genomes_project 17 49668399 49677713 - MGP_C57BL6NJ_P0048401 Srf protein_coding protein_coding MGP_C57BL6NJ_T0013569.1 MGP_C57BL6NJ_G0011614.1 mouse_genomes_project 17 38550462 38551033 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047862.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37309136 37321932 - MGP_C57BL6NJ_P0047862 Vars2 protein_coding protein_coding MGP_C57BL6NJ_T0047863.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37309157 37320603 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047864.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37309892 37317824 - MGP_C57BL6NJ_P0047864 Vars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047865.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37310059 37317366 - MGP_C57BL6NJ_P0047865 Vars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047866.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37310129 37311919 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047867.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37310245 37311020 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047868.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37313058 37313553 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047869.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37313190 37315472 - MGP_C57BL6NJ_P0047869 Vars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047870.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37313531 37315151 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047871.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37318785 37321073 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047872.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37320457 37321880 - Vars2 protein_coding retained_intron MGP_C57BL6NJ_T0047873.1 MGP_C57BL6NJ_G0024051.1 mouse_genomes_project 17 37320541 37321889 - MGP_C57BL6NJ_P0047873 Vars2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046343.1 MGP_C57BL6NJ_G0023701.1 mouse_genomes_project 17 24213857 24220372 - MGP_C57BL6NJ_P0046343 1600002H07Rik protein_coding protein_coding MGP_C57BL6NJ_T0046344.1 MGP_C57BL6NJ_G0023701.1 mouse_genomes_project 17 24214042 24220433 - 1600002H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0046345.1 MGP_C57BL6NJ_G0023701.1 mouse_genomes_project 17 24214349 24220274 - MGP_C57BL6NJ_P0046345 1600002H07Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046346.1 MGP_C57BL6NJ_G0023701.1 mouse_genomes_project 17 24218760 24220313 - 1600002H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0046347.1 MGP_C57BL6NJ_G0023701.1 mouse_genomes_project 17 24219362 24220335 - 1600002H07Rik protein_coding retained_intron MGP_C57BL6NJ_T0048172.1 MGP_C57BL6NJ_G0024155.1 mouse_genomes_project 17 42775452 42777044 - MGP_C57BL6NJ_P0048172 Pgk2 protein_coding protein_coding MGP_C57BL6NJ_T0047220.1 MGP_C57BL6NJ_G0023907.1 mouse_genomes_project 17 33253346 33282505 - MGP_C57BL6NJ_P0047220 Akap8l protein_coding protein_coding MGP_C57BL6NJ_T0102940.1 MGP_C57BL6NJ_G0040734.1 mouse_genomes_project 17 37815542 37816125 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0045921.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6059948 6078706 + Sft2d1 protein_coding retained_intron MGP_C57BL6NJ_T0045922.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6059948 6078706 + MGP_C57BL6NJ_P0045922 Sft2d1 protein_coding protein_coding MGP_C57BL6NJ_T0045923.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6059955 6158018 + Sft2d1 protein_coding processed_transcript MGP_C57BL6NJ_T0045924.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6059968 6078320 + MGP_C57BL6NJ_P0045924 Sft2d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045925.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6059985 6078273 + Sft2d1 protein_coding processed_transcript MGP_C57BL6NJ_T0045926.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6060015 6078704 + MGP_C57BL6NJ_P0045926 Sft2d1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045927.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6060021 6067055 + Sft2d1 protein_coding retained_intron MGP_C57BL6NJ_T0045928.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6067575 6073310 + Sft2d1 protein_coding retained_intron MGP_C57BL6NJ_T0045929.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6069394 6078327 + Sft2d1 protein_coding retained_intron MGP_C57BL6NJ_T0045930.1 MGP_C57BL6NJ_G0023544.1 mouse_genomes_project 17 6073232 6078704 + Sft2d1 protein_coding retained_intron MGP_C57BL6NJ_T0046632.1 MGP_C57BL6NJ_G0023775.1 mouse_genomes_project 17 25943707 25946182 - MGP_C57BL6NJ_P0046632 Metrn protein_coding protein_coding MGP_C57BL6NJ_T0046633.1 MGP_C57BL6NJ_G0023775.1 mouse_genomes_project 17 25944083 25946273 - MGP_C57BL6NJ_P0046633 Metrn protein_coding protein_coding MGP_C57BL6NJ_T0047208.1 MGP_C57BL6NJ_G0023903.1 mouse_genomes_project 17 33036320 33085257 - MGP_C57BL6NJ_P0047208 Notch3 protein_coding protein_coding MGP_C57BL6NJ_T0047018.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29564336 29577098 + MGP_C57BL6NJ_P0047018 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047019.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29564822 29584124 + MGP_C57BL6NJ_P0047019 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047020.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29564852 29582504 + MGP_C57BL6NJ_P0047020 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047021.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29564889 29580069 + Kctd20 protein_coding processed_transcript MGP_C57BL6NJ_T0047022.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29564985 29582504 + MGP_C57BL6NJ_P0047022 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047023.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29565074 29578055 + MGP_C57BL6NJ_P0047023 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047024.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29565602 29582512 + MGP_C57BL6NJ_P0047024 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0047025.1 MGP_C57BL6NJ_G0023859.1 mouse_genomes_project 17 29565602 29582510 + MGP_C57BL6NJ_P0047025 Kctd20 protein_coding protein_coding MGP_C57BL6NJ_T0048112.1 MGP_C57BL6NJ_G0024107.1 mouse_genomes_project 17 39276697 39280295 - MGP_C57BL6NJ_P0048112 Olfr98 protein_coding protein_coding MGP_C57BL6NJ_T0101378.1 MGP_C57BL6NJ_G0039424.1 mouse_genomes_project 17 52036991 52037123 + Gm24071 snoRNA snoRNA MGP_C57BL6NJ_T0010445.1 MGP_C57BL6NJ_G0008530.1 mouse_genomes_project 17 84667663 84667775 - Gm26377 miRNA miRNA MGP_C57BL6NJ_T0049234.1 MGP_C57BL6NJ_G0024518.1 mouse_genomes_project 17 95379505 95431089 + MGP_C57BL6NJ_P0049234 Gtf2a1l protein_coding protein_coding MGP_C57BL6NJ_T0049235.1 MGP_C57BL6NJ_G0024518.1 mouse_genomes_project 17 95379541 95407480 + MGP_C57BL6NJ_P0049235 Gtf2a1l protein_coding protein_coding MGP_C57BL6NJ_T0048874.1 MGP_C57BL6NJ_G0024393.1 mouse_genomes_project 17 71340310 71368835 - MGP_C57BL6NJ_P0048874 Rab12 protein_coding protein_coding MGP_C57BL6NJ_T0048875.1 MGP_C57BL6NJ_G0024393.1 mouse_genomes_project 17 71340310 71368788 - MGP_C57BL6NJ_P0048875 Rab12 protein_coding protein_coding MGP_C57BL6NJ_T0048876.1 MGP_C57BL6NJ_G0024393.1 mouse_genomes_project 17 71343288 71346114 - Rab12 protein_coding retained_intron MGP_C57BL6NJ_T0048877.1 MGP_C57BL6NJ_G0024393.1 mouse_genomes_project 17 71346143 71368495 - Rab12 protein_coding processed_transcript MGP_C57BL6NJ_T0048878.1 MGP_C57BL6NJ_G0024393.1 mouse_genomes_project 17 71353902 71368828 - Rab12 protein_coding retained_intron MGP_C57BL6NJ_T0046731.1 MGP_C57BL6NJ_G0023796.1 mouse_genomes_project 17 26314964 26329074 + MGP_C57BL6NJ_P0046731 Tmem8 protein_coding protein_coding MGP_C57BL6NJ_T0046732.1 MGP_C57BL6NJ_G0023796.1 mouse_genomes_project 17 26325261 26329074 + MGP_C57BL6NJ_P0046732 Tmem8 protein_coding protein_coding MGP_C57BL6NJ_T0102921.1 MGP_C57BL6NJ_G0040715.1 mouse_genomes_project 17 33965677 33972623 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007157.1 MGP_C57BL6NJ_G0005887.1 mouse_genomes_project 17 93305555 93306242 + Gm29168 lincRNA lincRNA MGP_C57BL6NJ_T0013539.1 MGP_C57BL6NJ_G0011584.1 mouse_genomes_project 17 21489844 21490586 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001126.1 MGP_C57BL6NJ_G0001032.1 mouse_genomes_project 17 55445710 55449747 + TEC TEC MGP_C57BL6NJ_T0003938.1 MGP_C57BL6NJ_G0003529.1 mouse_genomes_project 17 75924095 75949944 + Gm28727 antisense antisense MGP_C57BL6NJ_T0048165.1 MGP_C57BL6NJ_G0024148.1 mouse_genomes_project 17 41269330 41271163 + MGP_C57BL6NJ_P0048165 Esp24 protein_coding protein_coding MGP_C57BL6NJ_T0047026.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29585459 29625944 - MGP_C57BL6NJ_P0047026 Stk38 protein_coding protein_coding MGP_C57BL6NJ_T0047027.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29585591 29587652 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047028.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29586811 29625944 - MGP_C57BL6NJ_P0047028 Stk38 protein_coding protein_coding MGP_C57BL6NJ_T0047029.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29587513 29598347 - Stk38 protein_coding retained_intron MGP_C57BL6NJ_T0047030.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29587666 29589294 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047031.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29588856 29598636 - Stk38 protein_coding retained_intron MGP_C57BL6NJ_T0047032.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29588917 29594585 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047033.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29588917 29594050 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047034.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29589145 29594335 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047035.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29591971 29594320 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047036.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29594340 29625952 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047037.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29599710 29617818 - Stk38 protein_coding retained_intron MGP_C57BL6NJ_T0047038.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29604093 29607572 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047039.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29607558 29625742 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0047040.1 MGP_C57BL6NJ_G0023860.1 mouse_genomes_project 17 29615326 29625903 - Stk38 protein_coding processed_transcript MGP_C57BL6NJ_T0018000.1 MGP_C57BL6NJ_G0015726.1 mouse_genomes_project 17 6039980 6059899 - 4930506C21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018001.1 MGP_C57BL6NJ_G0015726.1 mouse_genomes_project 17 6043567 6045031 - 4930506C21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018002.1 MGP_C57BL6NJ_G0015726.1 mouse_genomes_project 17 6044123 6059927 - 4930506C21Rik processed_transcript retained_intron MGP_C57BL6NJ_T0046888.1 MGP_C57BL6NJ_G0023831.1 mouse_genomes_project 17 28164604 28179203 - MGP_C57BL6NJ_P0046888 Spdef protein_coding protein_coding MGP_C57BL6NJ_T0046889.1 MGP_C57BL6NJ_G0023831.1 mouse_genomes_project 17 28164699 28179204 - MGP_C57BL6NJ_P0046889 Spdef protein_coding protein_coding MGP_C57BL6NJ_T0046890.1 MGP_C57BL6NJ_G0023831.1 mouse_genomes_project 17 28164701 28179142 - MGP_C57BL6NJ_P0046890 Spdef protein_coding protein_coding MGP_C57BL6NJ_T0046891.1 MGP_C57BL6NJ_G0023831.1 mouse_genomes_project 17 28164757 28167835 - Spdef protein_coding processed_transcript MGP_C57BL6NJ_T0046892.1 MGP_C57BL6NJ_G0023831.1 mouse_genomes_project 17 28170244 28179177 - MGP_C57BL6NJ_P0046892 Spdef protein_coding protein_coding MGP_C57BL6NJ_T0046123.1 MGP_C57BL6NJ_G0023601.1 mouse_genomes_project 17 16921021 16983760 + MGP_C57BL6NJ_P0046123 protein_coding protein_coding MGP_C57BL6NJ_T0102910.1 MGP_C57BL6NJ_G0040704.1 mouse_genomes_project 17 20191107 20192046 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048539.1 MGP_C57BL6NJ_G0024268.1 mouse_genomes_project 17 51443161 51495348 - MGP_C57BL6NJ_P0048539 protein_coding protein_coding MGP_C57BL6NJ_T0007156.1 MGP_C57BL6NJ_G0005886.1 mouse_genomes_project 17 92192756 92221685 - Gm29418 lincRNA lincRNA MGP_C57BL6NJ_T0048845.1 MGP_C57BL6NJ_G0024386.1 mouse_genomes_project 17 70627406 70664681 - MGP_C57BL6NJ_P0048845 Ralbp1 protein_coding protein_coding MGP_C57BL6NJ_T0048846.1 MGP_C57BL6NJ_G0024386.1 mouse_genomes_project 17 70627406 70663849 - MGP_C57BL6NJ_P0048846 Ralbp1 protein_coding protein_coding MGP_C57BL6NJ_T0046445.1 MGP_C57BL6NJ_G0023729.1 mouse_genomes_project 17 24803531 24809668 + MGP_C57BL6NJ_P0046445 Msrb1 protein_coding protein_coding MGP_C57BL6NJ_T0046446.1 MGP_C57BL6NJ_G0023729.1 mouse_genomes_project 17 24803571 24809661 + MGP_C57BL6NJ_P0046446 Msrb1 protein_coding protein_coding MGP_C57BL6NJ_T0102924.1 MGP_C57BL6NJ_G0040718.1 mouse_genomes_project 17 35213115 35219768 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0048848.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70753428 70875740 - MGP_C57BL6NJ_P0048848 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0048849.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70755738 70760120 - protein_coding processed_transcript MGP_C57BL6NJ_T0048850.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70765136 70772285 - protein_coding processed_transcript MGP_C57BL6NJ_T0048851.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70776375 70876350 - MGP_C57BL6NJ_P0048851 protein_coding protein_coding MGP_C57BL6NJ_T0048852.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70813122 70876372 - protein_coding retained_intron MGP_C57BL6NJ_T0048853.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70832041 70876417 - protein_coding retained_intron MGP_C57BL6NJ_T0048854.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70832382 70876367 - protein_coding retained_intron MGP_C57BL6NJ_T0048855.1 MGP_C57BL6NJ_G0024388.1 mouse_genomes_project 17 70849117 70849972 - protein_coding processed_transcript MGP_C57BL6NJ_T0018027.1 MGP_C57BL6NJ_G0015740.1 mouse_genomes_project 17 35296951 35302490 - Gm20427 processed_transcript retained_intron MGP_C57BL6NJ_T0046558.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25379763 25380763 - Ube2i protein_coding retained_intron MGP_C57BL6NJ_T0046559.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25380056 25390030 - MGP_C57BL6NJ_P0046559 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046560.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25380555 25389014 - MGP_C57BL6NJ_P0046560 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046561.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25381990 25389291 - MGP_C57BL6NJ_P0046561 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046562.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25383831 25389710 - MGP_C57BL6NJ_P0046562 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046563.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25384676 25389024 - MGP_C57BL6NJ_P0046563 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046564.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25384825 25388579 - MGP_C57BL6NJ_P0046564 Ube2i protein_coding protein_coding MGP_C57BL6NJ_T0046565.1 MGP_C57BL6NJ_G0023754.1 mouse_genomes_project 17 25388086 25388683 - Ube2i protein_coding processed_transcript MGP_C57BL6NJ_T0011694.1 MGP_C57BL6NJ_G0009779.1 mouse_genomes_project 17 72446643 72446920 + Gm22277 misc_RNA misc_RNA MGP_C57BL6NJ_T0047797.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659121 36659989 - Aif1 protein_coding retained_intron MGP_C57BL6NJ_T0047798.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659121 36662655 - MGP_C57BL6NJ_P0047798 Aif1 protein_coding protein_coding MGP_C57BL6NJ_T0047799.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659122 36665756 - MGP_C57BL6NJ_P0047799 Aif1 protein_coding protein_coding MGP_C57BL6NJ_T0047800.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659124 36663114 - MGP_C57BL6NJ_P0047800 Aif1 protein_coding protein_coding MGP_C57BL6NJ_T0047801.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659126 36665823 - Aif1 protein_coding processed_transcript MGP_C57BL6NJ_T0047802.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36659653 36662467 - MGP_C57BL6NJ_P0047802 Aif1 protein_coding protein_coding MGP_C57BL6NJ_T0047803.1 MGP_C57BL6NJ_G0024030.1 mouse_genomes_project 17 36662365 36665756 - Aif1 protein_coding retained_intron MGP_C57BL6NJ_T0047211.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33113884 33148226 - MGP_C57BL6NJ_P0047211 Brd4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047212.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33114978 33210482 - MGP_C57BL6NJ_P0047212 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047213.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33114978 33210470 - MGP_C57BL6NJ_P0047213 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047214.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33114980 33210470 - MGP_C57BL6NJ_P0047214 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047215.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33123652 33210482 - MGP_C57BL6NJ_P0047215 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047216.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33125409 33210496 - MGP_C57BL6NJ_P0047216 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047217.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33132082 33211095 - MGP_C57BL6NJ_P0047217 Brd4 protein_coding protein_coding MGP_C57BL6NJ_T0047218.1 MGP_C57BL6NJ_G0023905.1 mouse_genomes_project 17 33132117 33211050 - MGP_C57BL6NJ_P0047218 Brd4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0013550.1 MGP_C57BL6NJ_G0011595.1 mouse_genomes_project 17 35700902 35701190 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048386.1 MGP_C57BL6NJ_G0024220.1 mouse_genomes_project 17 49543033 49550467 - MGP_C57BL6NJ_P0048386 Slc22a7 protein_coding protein_coding MGP_C57BL6NJ_T0047219.1 MGP_C57BL6NJ_G0023906.1 mouse_genomes_project 17 33235629 33253075 - MGP_C57BL6NJ_P0047219 Akap8 protein_coding protein_coding MGP_C57BL6NJ_T0046113.1 MGP_C57BL6NJ_G0023593.1 mouse_genomes_project 17 16636899 16648762 - MGP_C57BL6NJ_P0046113 Has1 protein_coding protein_coding MGP_C57BL6NJ_T0101383.1 MGP_C57BL6NJ_G0039429.1 mouse_genomes_project 17 69674636 69674768 - Gm25344 snoRNA snoRNA MGP_C57BL6NJ_T0102912.1 MGP_C57BL6NJ_G0040706.1 mouse_genomes_project 17 20595321 20595834 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018025.1 MGP_C57BL6NJ_G0015738.1 mouse_genomes_project 17 34780081 34795028 + Gm20507 processed_transcript processed_transcript MGP_C57BL6NJ_T0047842.1 MGP_C57BL6NJ_G0024043.1 mouse_genomes_project 17 37146092 37150183 - MGP_C57BL6NJ_P0047842 Tcf19 protein_coding protein_coding MGP_C57BL6NJ_T0047843.1 MGP_C57BL6NJ_G0024043.1 mouse_genomes_project 17 37146095 37150144 - MGP_C57BL6NJ_P0047843 Tcf19 protein_coding protein_coding MGP_C57BL6NJ_T0047844.1 MGP_C57BL6NJ_G0024043.1 mouse_genomes_project 17 37148012 37150179 - MGP_C57BL6NJ_P0047844 Tcf19 protein_coding protein_coding MGP_C57BL6NJ_T0047845.1 MGP_C57BL6NJ_G0024043.1 mouse_genomes_project 17 37148176 37149906 - MGP_C57BL6NJ_P0047845 Tcf19 protein_coding protein_coding MGP_C57BL6NJ_T0007074.1 MGP_C57BL6NJ_G0005824.1 mouse_genomes_project 17 20956833 20964539 - 9330136K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0013557.1 MGP_C57BL6NJ_G0011602.1 mouse_genomes_project 17 37939502 37940048 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013549.1 MGP_C57BL6NJ_G0011594.1 mouse_genomes_project 17 35414186 35414399 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0102911.1 MGP_C57BL6NJ_G0040705.1 mouse_genomes_project 17 20228494 20228918 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046187.1 MGP_C57BL6NJ_G0023647.1 mouse_genomes_project 17 21484914 21514958 + MGP_C57BL6NJ_P0046187 Zfp943 protein_coding protein_coding MGP_C57BL6NJ_T0046188.1 MGP_C57BL6NJ_G0023647.1 mouse_genomes_project 17 21484921 21512636 + MGP_C57BL6NJ_P0046188 Zfp943 protein_coding protein_coding MGP_C57BL6NJ_T0046189.1 MGP_C57BL6NJ_G0023647.1 mouse_genomes_project 17 21484948 21625769 + MGP_C57BL6NJ_P0046189 Zfp943 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046190.1 MGP_C57BL6NJ_G0023647.1 mouse_genomes_project 17 21528412 21534288 + Zfp943 protein_coding processed_transcript MGP_C57BL6NJ_T0046064.1 MGP_C57BL6NJ_G0023582.1 mouse_genomes_project 17 13846233 13883987 + MGP_C57BL6NJ_P0046064 Fam120b protein_coding protein_coding MGP_C57BL6NJ_T0007110.1 MGP_C57BL6NJ_G0005854.1 mouse_genomes_project 17 37403401 37425001 - Gm20442 lincRNA lincRNA MGP_C57BL6NJ_T0047886.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37335613 37354489 - MGP_C57BL6NJ_P0047886 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047887.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37335613 37359637 - MGP_C57BL6NJ_P0047887 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047888.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37335616 37359177 - MGP_C57BL6NJ_P0047888 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047889.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37335616 37357197 - MGP_C57BL6NJ_P0047889 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047890.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37335616 37359079 - MGP_C57BL6NJ_P0047890 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047891.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37336477 37354431 - MGP_C57BL6NJ_P0047891 Ddr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047892.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37339176 37357117 - MGP_C57BL6NJ_P0047892 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047893.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37343901 37359015 - MGP_C57BL6NJ_P0047893 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047894.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37343929 37359659 - MGP_C57BL6NJ_P0047894 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047895.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37344029 37351850 - MGP_C57BL6NJ_P0047895 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047896.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37345005 37357199 - MGP_C57BL6NJ_P0047896 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047897.1 MGP_C57BL6NJ_G0024053.1 mouse_genomes_project 17 37346878 37357470 - MGP_C57BL6NJ_P0047897 Ddr1 protein_coding protein_coding MGP_C57BL6NJ_T0047994.1 MGP_C57BL6NJ_G0024070.1 mouse_genomes_project 17 37749697 37763032 - H2-T10 protein_coding retained_intron MGP_C57BL6NJ_T0047995.1 MGP_C57BL6NJ_G0024070.1 mouse_genomes_project 17 37751086 37763222 - MGP_C57BL6NJ_P0047995 H2-T10 protein_coding protein_coding MGP_C57BL6NJ_T0047996.1 MGP_C57BL6NJ_G0024070.1 mouse_genomes_project 17 37751088 37763279 - MGP_C57BL6NJ_P0047996 H2-T10 protein_coding protein_coding MGP_C57BL6NJ_T0047997.1 MGP_C57BL6NJ_G0024070.1 mouse_genomes_project 17 37751088 37763237 - MGP_C57BL6NJ_P0047997 H2-T10 protein_coding protein_coding MGP_C57BL6NJ_T0047998.1 MGP_C57BL6NJ_G0024070.1 mouse_genomes_project 17 37751088 37763215 - MGP_C57BL6NJ_P0047998 H2-T10 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010386.1 MGP_C57BL6NJ_G0008471.1 mouse_genomes_project 17 4340722 4340831 - Mir692-1 miRNA miRNA MGP_C57BL6NJ_T0101393.1 MGP_C57BL6NJ_G0039439.1 mouse_genomes_project 17 98726955 98727085 - Gm24244 snoRNA snoRNA MGP_C57BL6NJ_T0048134.1 MGP_C57BL6NJ_G0024125.1 mouse_genomes_project 17 39759654 39764809 + MGP_C57BL6NJ_P0048134 Olfr119 protein_coding protein_coding MGP_C57BL6NJ_T0045994.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10987343 10990164 + Tcp1 protein_coding processed_transcript MGP_C57BL6NJ_T0045995.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10987971 11001106 + MGP_C57BL6NJ_P0045995 Tcp1 protein_coding protein_coding MGP_C57BL6NJ_T0045996.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10988024 11001617 + MGP_C57BL6NJ_P0045996 Tcp1 protein_coding protein_coding MGP_C57BL6NJ_T0045997.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10988081 10990429 + MGP_C57BL6NJ_P0045997 Tcp1 protein_coding protein_coding MGP_C57BL6NJ_T0045998.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10988091 10992278 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0045999.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10988091 11001112 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0046000.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10988117 10991608 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0046001.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10991722 10992690 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0046002.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10992166 10994782 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0046003.1 MGP_C57BL6NJ_G0023565.1 mouse_genomes_project 17 10992330 10993198 + Tcp1 protein_coding retained_intron MGP_C57BL6NJ_T0047774.1 MGP_C57BL6NJ_G0024027.1 mouse_genomes_project 17 36614334 36617388 - MGP_C57BL6NJ_P0047774 Apom protein_coding protein_coding MGP_C57BL6NJ_T0007146.1 MGP_C57BL6NJ_G0005877.1 mouse_genomes_project 17 75795107 75806760 - 5031415H12Rik lincRNA lincRNA MGP_C57BL6NJ_T0047250.1 MGP_C57BL6NJ_G0023913.1 mouse_genomes_project 17 33479400 33497879 + MGP_C57BL6NJ_P0047250 protein_coding protein_coding MGP_C57BL6NJ_T0047251.1 MGP_C57BL6NJ_G0023913.1 mouse_genomes_project 17 33482604 33584380 + protein_coding retained_intron MGP_C57BL6NJ_T0047253.1 MGP_C57BL6NJ_G0023913.1 mouse_genomes_project 17 33573928 33575476 + protein_coding retained_intron MGP_C57BL6NJ_T0102933.1 MGP_C57BL6NJ_G0040727.1 mouse_genomes_project 17 36192249 36193645 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013621.1 MGP_C57BL6NJ_G0011666.1 mouse_genomes_project 17 87833211 87833590 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0048571.1 MGP_C57BL6NJ_G0024277.1 mouse_genomes_project 17 51811497 51818646 + MGP_C57BL6NJ_P0048571 Oard1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099042.1 MGP_C57BL6NJ_G0037106.1 mouse_genomes_project 17 51129437 51129556 + n-R5s28 rRNA rRNA MGP_C57BL6NJ_T0049111.1 MGP_C57BL6NJ_G0024474.1 mouse_genomes_project 17 87460113 87460274 + MGP_C57BL6NJ_P0049111 Gm11096 protein_coding protein_coding MGP_C57BL6NJ_T0099047.1 MGP_C57BL6NJ_G0037111.1 mouse_genomes_project 17 90183681 90183790 + Gm23905 rRNA rRNA MGP_C57BL6NJ_T0049008.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79951940 80151638 + MGP_C57BL6NJ_P0049008 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049009.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79952113 80150665 + MGP_C57BL6NJ_P0049009 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049010.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79952113 80150665 + MGP_C57BL6NJ_P0049010 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049011.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79952113 80150665 + MGP_C57BL6NJ_P0049011 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049012.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79952167 79996841 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049013.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79952197 80150665 + MGP_C57BL6NJ_P0049013 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049014.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79974288 79977199 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049015.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79986754 79990818 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049016.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79986774 79992537 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049017.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79990445 79992684 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049018.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 79990774 79995783 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049019.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80040348 80062812 + MGP_C57BL6NJ_P0049019 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049020.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80045338 80048556 + MGP_C57BL6NJ_P0049020 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049021.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80054132 80062811 + MGP_C57BL6NJ_P0049021 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049022.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80054501 80083639 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049023.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80054531 80061620 + MGP_C57BL6NJ_P0049023 Birc6 protein_coding protein_coding MGP_C57BL6NJ_T0049024.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80055279 80058582 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049025.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80061251 80062811 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049026.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80096587 80103960 + MGP_C57BL6NJ_P0049026 Birc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049027.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80096597 80098421 + Birc6 protein_coding processed_transcript MGP_C57BL6NJ_T0049028.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80098344 80151629 + MGP_C57BL6NJ_P0049028 Birc6 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049029.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80103841 80113500 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049030.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80114893 80127396 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0049031.1 MGP_C57BL6NJ_G0024435.1 mouse_genomes_project 17 80144705 80151351 + Birc6 protein_coding retained_intron MGP_C57BL6NJ_T0013529.1 MGP_C57BL6NJ_G0011574.1 mouse_genomes_project 17 10879183 10879928 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010394.1 MGP_C57BL6NJ_G0008479.1 mouse_genomes_project 17 24235657 24235735 - Mir5134 miRNA miRNA MGP_C57BL6NJ_T0007060.1 MGP_C57BL6NJ_G0005812.1 mouse_genomes_project 17 6138232 6150659 - Gm16702 lincRNA lincRNA MGP_C57BL6NJ_T0049105.1 MGP_C57BL6NJ_G0024470.1 mouse_genomes_project 17 86934386 86935164 - MGP_C57BL6NJ_P0049105 protein_coding protein_coding MGP_C57BL6NJ_T0100088.1 MGP_C57BL6NJ_G0038134.1 mouse_genomes_project 17 52754929 52755089 + Gm22978 snRNA snRNA MGP_C57BL6NJ_T0047663.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36353086 36370931 + MGP_C57BL6NJ_P0047663 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047664.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36353116 36370927 + MGP_C57BL6NJ_P0047664 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047665.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36355103 36370924 + MGP_C57BL6NJ_P0047665 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047666.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36355120 36370931 + MGP_C57BL6NJ_P0047666 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047667.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36355843 36359497 + Ehmt2 protein_coding processed_transcript MGP_C57BL6NJ_T0047668.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36362078 36363127 + Ehmt2 protein_coding retained_intron MGP_C57BL6NJ_T0047669.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36362115 36362916 + Ehmt2 protein_coding retained_intron MGP_C57BL6NJ_T0047670.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36362785 36363501 + Ehmt2 protein_coding retained_intron MGP_C57BL6NJ_T0047671.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36362877 36365434 + MGP_C57BL6NJ_P0047671 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047672.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36363619 36365319 + Ehmt2 protein_coding processed_transcript MGP_C57BL6NJ_T0047673.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36364273 36370927 + MGP_C57BL6NJ_P0047673 Ehmt2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0047674.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36364275 36365678 + MGP_C57BL6NJ_P0047674 Ehmt2 protein_coding protein_coding MGP_C57BL6NJ_T0047675.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36365520 36368378 + Ehmt2 protein_coding retained_intron MGP_C57BL6NJ_T0047676.1 MGP_C57BL6NJ_G0024004.1 mouse_genomes_project 17 36367850 36370932 + Ehmt2 protein_coding retained_intron MGP_C57BL6NJ_T0046014.1 MGP_C57BL6NJ_G0023568.1 mouse_genomes_project 17 11882886 11888823 + MGP_C57BL6NJ_P0046014 protein_coding protein_coding MGP_C57BL6NJ_T0047175.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32427425 32473846 + MGP_C57BL6NJ_P0047175 Pknox1 protein_coding protein_coding MGP_C57BL6NJ_T0047176.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32427435 32454748 + Pknox1 protein_coding retained_intron MGP_C57BL6NJ_T0047177.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32427477 32476045 + MGP_C57BL6NJ_P0047177 Pknox1 protein_coding protein_coding MGP_C57BL6NJ_T0047178.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32446032 32476049 + MGP_C57BL6NJ_P0047178 Pknox1 protein_coding protein_coding MGP_C57BL6NJ_T0047179.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32456401 32456828 + Pknox1 protein_coding processed_transcript MGP_C57BL6NJ_T0047180.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32459458 32464239 + Pknox1 protein_coding retained_intron MGP_C57BL6NJ_T0047181.1 MGP_C57BL6NJ_G0023896.1 mouse_genomes_project 17 32471102 32471949 + Pknox1 protein_coding retained_intron MGP_C57BL6NJ_T0047483.1 MGP_C57BL6NJ_G0023966.1 mouse_genomes_project 17 35424219 35441711 + protein_coding processed_transcript MGP_C57BL6NJ_T0048756.1 MGP_C57BL6NJ_G0024347.1 mouse_genomes_project 17 60867791 60885244 + MGP_C57BL6NJ_P0048756 1700061G19Rik protein_coding protein_coding MGP_C57BL6NJ_T0048757.1 MGP_C57BL6NJ_G0024347.1 mouse_genomes_project 17 60867817 60870133 + 1700061G19Rik protein_coding retained_intron MGP_C57BL6NJ_T0045848.1 MGP_C57BL6NJ_G0023522.1 mouse_genomes_project 17 2675936 2709658 - MGP_C57BL6NJ_P0045848 Tmem242 protein_coding protein_coding MGP_C57BL6NJ_T0045850.1 MGP_C57BL6NJ_G0023522.1 mouse_genomes_project 17 2701695 2709674 - MGP_C57BL6NJ_P0045850 Tmem242 protein_coding protein_coding MGP_C57BL6NJ_T0045851.1 MGP_C57BL6NJ_G0023522.1 mouse_genomes_project 17 2702425 2709671 - MGP_C57BL6NJ_P0045851 Tmem242 protein_coding protein_coding MGP_C57BL6NJ_T0047972.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37644914 37657930 - MGP_C57BL6NJ_P0047972 Abcf1 protein_coding protein_coding MGP_C57BL6NJ_T0047973.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37645382 37646582 - Abcf1 protein_coding retained_intron MGP_C57BL6NJ_T0047974.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37645396 37646284 - Abcf1 protein_coding retained_intron MGP_C57BL6NJ_T0047975.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37646166 37647562 - Abcf1 protein_coding retained_intron MGP_C57BL6NJ_T0047976.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37646765 37647710 - Abcf1 protein_coding retained_intron MGP_C57BL6NJ_T0047977.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37649796 37652338 - Abcf1 protein_coding retained_intron MGP_C57BL6NJ_T0047978.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37651734 37657528 - MGP_C57BL6NJ_P0047978 Abcf1 protein_coding protein_coding MGP_C57BL6NJ_T0047979.1 MGP_C57BL6NJ_G0024065.1 mouse_genomes_project 17 37652319 37657930 - MGP_C57BL6NJ_P0047979 Abcf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007154.1 MGP_C57BL6NJ_G0005884.1 mouse_genomes_project 17 90080478 90083185 - C430042M11Rik lincRNA lincRNA MGP_C57BL6NJ_T0047182.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32480987 32507442 - MGP_C57BL6NJ_P0047182 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0047183.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32481004 32507408 - MGP_C57BL6NJ_P0047183 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0047184.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32481005 32507408 - MGP_C57BL6NJ_P0047184 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0047185.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32485529 32486238 - Cbs protein_coding retained_intron MGP_C57BL6NJ_T0047186.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32489311 32494471 - Cbs protein_coding processed_transcript MGP_C57BL6NJ_T0047187.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32489836 32491423 - Cbs protein_coding processed_transcript MGP_C57BL6NJ_T0047188.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32493441 32507033 - MGP_C57BL6NJ_P0047188 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0047189.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32493495 32506892 - MGP_C57BL6NJ_P0047189 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0047190.1 MGP_C57BL6NJ_G0023897.1 mouse_genomes_project 17 32495807 32506892 - MGP_C57BL6NJ_P0047190 Cbs protein_coding protein_coding MGP_C57BL6NJ_T0102959.1 MGP_C57BL6NJ_G0040753.1 mouse_genomes_project 17 38599644 38600073 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0013584.1 MGP_C57BL6NJ_G0011629.1 mouse_genomes_project 17 40623147 40623828 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0047602.1 MGP_C57BL6NJ_G0023993.1 mouse_genomes_project 17 36081757 36233507 + MGP_C57BL6NJ_P0047602 Tnxb protein_coding protein_coding MGP_C57BL6NJ_T0047603.1 MGP_C57BL6NJ_G0023993.1 mouse_genomes_project 17 36081757 36233660 + MGP_C57BL6NJ_P0047603 Tnxb protein_coding protein_coding MGP_C57BL6NJ_T0047435.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35296950 35298016 - H2-Ke6 protein_coding retained_intron MGP_C57BL6NJ_T0047436.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35296950 35297676 - H2-Ke6 protein_coding retained_intron MGP_C57BL6NJ_T0047437.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35296950 35298974 - MGP_C57BL6NJ_P0047437 H2-Ke6 protein_coding protein_coding MGP_C57BL6NJ_T0047438.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35296953 35298964 - H2-Ke6 protein_coding retained_intron MGP_C57BL6NJ_T0047439.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35297074 35297870 - H2-Ke6 protein_coding retained_intron MGP_C57BL6NJ_T0047440.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35297325 35298781 - H2-Ke6 protein_coding processed_transcript MGP_C57BL6NJ_T0047441.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35297586 35298978 - MGP_C57BL6NJ_P0047441 H2-Ke6 protein_coding protein_coding MGP_C57BL6NJ_T0047442.1 MGP_C57BL6NJ_G0023959.1 mouse_genomes_project 17 35297831 35298956 - H2-Ke6 protein_coding retained_intron MGP_C57BL6NJ_T0007116.1 MGP_C57BL6NJ_G0005859.1 mouse_genomes_project 17 39148964 39178642 - lincRNA lincRNA MGP_C57BL6NJ_T0048742.1 MGP_C57BL6NJ_G0024336.1 mouse_genomes_project 17 60574786 60575635 + MGP_C57BL6NJ_P0048742 Rpl36 protein_coding protein_coding MGP_C57BL6NJ_T0046134.1 MGP_C57BL6NJ_G0023612.1 mouse_genomes_project 17 19405967 19407461 - MGP_C57BL6NJ_P0046134 Fpr-rs7 protein_coding protein_coding MGP_C57BL6NJ_T0049152.1 MGP_C57BL6NJ_G0024490.1 mouse_genomes_project 17 91360805 91401268 + MGP_C57BL6NJ_P0049152 Slc3a1 protein_coding protein_coding MGP_C57BL6NJ_T0046857.1 MGP_C57BL6NJ_G0023826.1 mouse_genomes_project 17 27981167 27992931 + MGP_C57BL6NJ_P0046857 protein_coding protein_coding MGP_C57BL6NJ_T0046858.1 MGP_C57BL6NJ_G0023826.1 mouse_genomes_project 17 27981170 27992931 + MGP_C57BL6NJ_P0046858 protein_coding protein_coding MGP_C57BL6NJ_T0046859.1 MGP_C57BL6NJ_G0023826.1 mouse_genomes_project 17 27981188 27992427 + MGP_C57BL6NJ_P0046859 protein_coding protein_coding MGP_C57BL6NJ_T0046860.1 MGP_C57BL6NJ_G0023826.1 mouse_genomes_project 17 27981215 27992462 + MGP_C57BL6NJ_P0046860 protein_coding protein_coding MGP_C57BL6NJ_T0046861.1 MGP_C57BL6NJ_G0023826.1 mouse_genomes_project 17 27981215 27992931 + MGP_C57BL6NJ_P0046861 protein_coding protein_coding MGP_C57BL6NJ_T0101380.1 MGP_C57BL6NJ_G0039426.1 mouse_genomes_project 17 63381262 63381383 - Gm23769 snoRNA snoRNA MGP_C57BL6NJ_T0013555.1 MGP_C57BL6NJ_G0011600.1 mouse_genomes_project 17 37196462 37196658 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046097.1 MGP_C57BL6NJ_G0023590.1 mouse_genomes_project 17 16304033 16407806 - MGP_C57BL6NJ_P0046097 Lnpep protein_coding protein_coding MGP_C57BL6NJ_T0048540.1 MGP_C57BL6NJ_G0024269.1 mouse_genomes_project 17 51605355 51618937 + MGP_C57BL6NJ_P0048540 Trem1 protein_coding protein_coding MGP_C57BL6NJ_T0048541.1 MGP_C57BL6NJ_G0024269.1 mouse_genomes_project 17 51605358 51619499 + MGP_C57BL6NJ_P0048541 Trem1 protein_coding protein_coding MGP_C57BL6NJ_T0010417.1 MGP_C57BL6NJ_G0008502.1 mouse_genomes_project 17 35295929 35295989 + Mir219c miRNA miRNA MGP_C57BL6NJ_T0049174.1 MGP_C57BL6NJ_G0024502.1 mouse_genomes_project 17 93478779 93505178 - MGP_C57BL6NJ_P0049174 Pigf protein_coding protein_coding MGP_C57BL6NJ_T0046605.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25860623 25869088 - MGP_C57BL6NJ_P0046605 Chtf18 protein_coding protein_coding MGP_C57BL6NJ_T0046606.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25860623 25869040 - MGP_C57BL6NJ_P0046606 Chtf18 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046607.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25860727 25869035 - Chtf18 protein_coding retained_intron MGP_C57BL6NJ_T0046608.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25860743 25862599 - MGP_C57BL6NJ_P0046608 Chtf18 protein_coding protein_coding MGP_C57BL6NJ_T0046609.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25860744 25861483 - MGP_C57BL6NJ_P0046609 Chtf18 protein_coding protein_coding MGP_C57BL6NJ_T0046610.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25861966 25862596 - Chtf18 protein_coding retained_intron MGP_C57BL6NJ_T0046611.1 MGP_C57BL6NJ_G0023767.1 mouse_genomes_project 17 25867244 25869079 - MGP_C57BL6NJ_P0046611 Chtf18 protein_coding protein_coding MGP_C57BL6NJ_T0047812.1 MGP_C57BL6NJ_G0024036.1 mouse_genomes_project 17 36727692 36730993 + MGP_C57BL6NJ_P0047812 Gm16181 protein_coding protein_coding MGP_C57BL6NJ_T0047292.1 MGP_C57BL6NJ_G0023929.1 mouse_genomes_project 17 34305027 34312371 + MGP_C57BL6NJ_P0047292 protein_coding protein_coding MGP_C57BL6NJ_T0046406.1 MGP_C57BL6NJ_G0023716.1 mouse_genomes_project 17 24595392 24644993 + MGP_C57BL6NJ_P0046406 Pkd1 protein_coding protein_coding MGP_C57BL6NJ_T0046407.1 MGP_C57BL6NJ_G0023716.1 mouse_genomes_project 17 24595705 24644968 + MGP_C57BL6NJ_P0046407 Pkd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013618.1 MGP_C57BL6NJ_G0011663.1 mouse_genomes_project 17 83386503 83389557 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0046325.1 MGP_C57BL6NJ_G0023699.1 mouse_genomes_project 17 24162633 24167943 - Atp6v0c protein_coding processed_transcript MGP_C57BL6NJ_T0046326.1 MGP_C57BL6NJ_G0023699.1 mouse_genomes_project 17 24162637 24168579 - MGP_C57BL6NJ_P0046326 Atp6v0c protein_coding protein_coding MGP_C57BL6NJ_T0046351.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24358984 24405910 + Abca3 protein_coding retained_intron MGP_C57BL6NJ_T0046352.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359057 24419986 + MGP_C57BL6NJ_P0046352 Abca3 protein_coding protein_coding MGP_C57BL6NJ_T0046353.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359080 24419986 + MGP_C57BL6NJ_P0046353 Abca3 protein_coding protein_coding MGP_C57BL6NJ_T0046354.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359119 24409296 + Abca3 protein_coding retained_intron MGP_C57BL6NJ_T0046355.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359119 24385095 + Abca3 protein_coding retained_intron MGP_C57BL6NJ_T0046356.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359131 24368014 + Abca3 protein_coding processed_transcript MGP_C57BL6NJ_T0046357.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24359136 24390597 + Abca3 protein_coding retained_intron MGP_C57BL6NJ_T0046358.1 MGP_C57BL6NJ_G0023704.1 mouse_genomes_project 17 24371487 24419986 + MGP_C57BL6NJ_P0046358 Abca3 protein_coding protein_coding MGP_C57BL6NJ_T0046615.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25920938 25932340 + MGP_C57BL6NJ_P0046615 Narfl protein_coding protein_coding MGP_C57BL6NJ_T0046616.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25920938 25931799 + MGP_C57BL6NJ_P0046616 Narfl protein_coding protein_coding MGP_C57BL6NJ_T0046617.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25920969 25922388 + Narfl protein_coding retained_intron MGP_C57BL6NJ_T0046618.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25920979 25928521 + MGP_C57BL6NJ_P0046618 Narfl protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0046619.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25920981 25931804 + Narfl protein_coding retained_intron MGP_C57BL6NJ_T0046620.1 MGP_C57BL6NJ_G0023771.1 mouse_genomes_project 17 25925742 25928601 + Narfl protein_coding retained_intron MGP_C57BL6NJ_T0046851.1 MGP_C57BL6NJ_G0023823.1 mouse_genomes_project 17 27513261 27526182 - MGP_C57BL6NJ_P0046851 Ip6k3 protein_coding protein_coding MGP_C57BL6NJ_T0048593.1 MGP_C57BL6NJ_G0024283.1 mouse_genomes_project 17 52924943 53037318 - MGP_C57BL6NJ_P0048593 Daam2 protein_coding protein_coding MGP_C57BL6NJ_T0048594.1 MGP_C57BL6NJ_G0024283.1 mouse_genomes_project 17 52927447 53037304 - MGP_C57BL6NJ_P0048594 Daam2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0047583.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011098 36026473 - MGP_C57BL6NJ_P0047583 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047584.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011099 36026415 - MGP_C57BL6NJ_P0047584 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047585.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011100 36026186 - MGP_C57BL6NJ_P0047585 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047586.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011665 36030014 - MGP_C57BL6NJ_P0047586 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047587.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011665 36030528 - MGP_C57BL6NJ_P0047587 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047588.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011665 36029974 - MGP_C57BL6NJ_P0047588 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047589.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36011750 36025966 - MGP_C57BL6NJ_P0047589 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047590.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36017287 36030999 - MGP_C57BL6NJ_P0047590 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047591.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36017483 36026464 - MGP_C57BL6NJ_P0047591 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047592.1 MGP_C57BL6NJ_G0023989.1 mouse_genomes_project 17 36025526 36026188 - MGP_C57BL6NJ_P0047592 Ppt2 protein_coding protein_coding MGP_C57BL6NJ_T0047290.1 MGP_C57BL6NJ_G0023928.1 mouse_genomes_project 17 34160171 34164265 - MGP_C57BL6NJ_P0047290 Morc2b protein_coding protein_coding MGP_C57BL6NJ_T0047291.1 MGP_C57BL6NJ_G0023928.1 mouse_genomes_project 17 34160226 34164081 - MGP_C57BL6NJ_P0047291 Morc2b protein_coding protein_coding MGP_C57BL6NJ_T0048033.1 MGP_C57BL6NJ_G0024080.1 mouse_genomes_project 17 38438910 38441079 + MGP_C57BL6NJ_P0048033 H2-M11 protein_coding protein_coding MGP_C57BL6NJ_T0048387.1 MGP_C57BL6NJ_G0024221.1 mouse_genomes_project 17 49551567 49552089 - MGP_C57BL6NJ_P0048387 Gm5093 protein_coding protein_coding MGP_C57BL6NJ_T0049151.1 MGP_C57BL6NJ_G0024489.1 mouse_genomes_project 17 91318680 91342737 + MGP_C57BL6NJ_P0049151 protein_coding protein_coding MGP_C57BL6NJ_T0049267.1 MGP_C57BL6NJ_G0024524.1 mouse_genomes_project 17 101896358 101926730 - MGP_C57BL6NJ_P0049267 Mettl4 protein_coding protein_coding MGP_C57BL6NJ_T0048142.1 MGP_C57BL6NJ_G0024132.1 mouse_genomes_project 17 39928801 39996002 + MGP_C57BL6NJ_P0048142 Olfr126 protein_coding protein_coding MGP_C57BL6NJ_T0011689.1 MGP_C57BL6NJ_G0009774.1 mouse_genomes_project 17 46874660 46874946 - Gm24532 misc_RNA misc_RNA MGP_C57BL6NJ_T0010413.1 MGP_C57BL6NJ_G0008498.1 mouse_genomes_project 17 30280699 30280762 + Mir7667 miRNA miRNA MGP_C57BL6NJ_T0046278.1 MGP_C57BL6NJ_G0023681.1 mouse_genomes_project 17 23735391 23741596 - MGP_C57BL6NJ_P0046278 Tceb2 protein_coding protein_coding MGP_C57BL6NJ_T0018014.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24414433 24424218 - D330041H03Rik processed_transcript antisense MGP_C57BL6NJ_T0018015.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24419265 24424302 - D330041H03Rik processed_transcript antisense MGP_C57BL6NJ_T0018016.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24419281 24424196 - D330041H03Rik processed_transcript antisense MGP_C57BL6NJ_T0018017.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24421811 24423413 - D330041H03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018018.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24421819 24424331 - D330041H03Rik processed_transcript antisense MGP_C57BL6NJ_T0018019.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24422218 24424216 - D330041H03Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018020.1 MGP_C57BL6NJ_G0015733.1 mouse_genomes_project 17 24422293 24424188 - D330041H03Rik processed_transcript antisense MGP_C57BL6NJ_T0102916.1 MGP_C57BL6NJ_G0040710.1 mouse_genomes_project 17 22955260 22955911 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046896.1 MGP_C57BL6NJ_G0023833.1 mouse_genomes_project 17 28302843 28318282 + MGP_C57BL6NJ_P0046896 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0046897.1 MGP_C57BL6NJ_G0023833.1 mouse_genomes_project 17 28302845 28318373 + protein_coding retained_intron MGP_C57BL6NJ_T0013522.1 MGP_C57BL6NJ_G0011567.1 mouse_genomes_project 17 3144010 3144308 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0001124.1 MGP_C57BL6NJ_G0001030.1 mouse_genomes_project 17 55429396 55432650 + TEC TEC MGP_C57BL6NJ_T0018023.1 MGP_C57BL6NJ_G0015736.1 mouse_genomes_project 17 30232167 30363986 + Gm28052 processed_transcript processed_transcript MGP_C57BL6NJ_T0049045.1 MGP_C57BL6NJ_G0024440.1 mouse_genomes_project 17 83956412 84145738 + MGP_C57BL6NJ_P0049045 Crim1 protein_coding protein_coding MGP_C57BL6NJ_T0001132.1 MGP_C57BL6NJ_G0001038.1 mouse_genomes_project 17 95229537 95229718 + TEC TEC MGP_C57BL6NJ_T0007109.1 MGP_C57BL6NJ_G0005853.1 mouse_genomes_project 17 37397812 37399885 - Gm20443 lincRNA lincRNA MGP_C57BL6NJ_T0100073.1 MGP_C57BL6NJ_G0038119.1 mouse_genomes_project 17 31045068 31045141 + Gm25049 snRNA snRNA MGP_C57BL6NJ_T0102941.1 MGP_C57BL6NJ_G0040735.1 mouse_genomes_project 17 37816329 37823131 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0100082.1 MGP_C57BL6NJ_G0038128.1 mouse_genomes_project 17 43596977 43597125 - Gm23078 snRNA snRNA MGP_C57BL6NJ_T0048651.1 MGP_C57BL6NJ_G0024305.1 mouse_genomes_project 17 59784571 59801915 + MGP_C57BL6NJ_P0048651 Zfp959 protein_coding protein_coding MGP_C57BL6NJ_T0010425.1 MGP_C57BL6NJ_G0008510.1 mouse_genomes_project 17 36759981 36760098 + Mir8094 miRNA miRNA MGP_C57BL6NJ_T0047685.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454041 36456161 + Lsm2 protein_coding retained_intron MGP_C57BL6NJ_T0047686.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454059 36458071 + MGP_C57BL6NJ_P0047686 Lsm2 protein_coding protein_coding MGP_C57BL6NJ_T0047687.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454090 36457851 + Lsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0047688.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454300 36457772 + Lsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0047689.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454308 36458071 + MGP_C57BL6NJ_P0047689 Lsm2 protein_coding protein_coding MGP_C57BL6NJ_T0047690.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454338 36458069 + Lsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0047691.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454338 36458014 + Lsm2 protein_coding processed_transcript MGP_C57BL6NJ_T0047692.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454338 36458069 + MGP_C57BL6NJ_P0047692 Lsm2 protein_coding protein_coding MGP_C57BL6NJ_T0047693.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454348 36457677 + Lsm2 protein_coding retained_intron MGP_C57BL6NJ_T0047694.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36454388 36457677 + Lsm2 protein_coding retained_intron MGP_C57BL6NJ_T0047695.1 MGP_C57BL6NJ_G0024009.1 mouse_genomes_project 17 36456787 36458070 + Lsm2 protein_coding retained_intron MGP_C57BL6NJ_T0047261.1 MGP_C57BL6NJ_G0023918.1 mouse_genomes_project 17 33780535 33800913 - MGP_C57BL6NJ_P0047261 Zfp811 protein_coding protein_coding MGP_C57BL6NJ_T0047262.1 MGP_C57BL6NJ_G0023918.1 mouse_genomes_project 17 33784363 33787896 - MGP_C57BL6NJ_P0047262 Zfp811 protein_coding protein_coding MGP_C57BL6NJ_T0102898.1 MGP_C57BL6NJ_G0040692.1 mouse_genomes_project 17 18216671 18250255 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0102976.1 MGP_C57BL6NJ_G0040770.1 mouse_genomes_project 17 39437666 39439648 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0046590.1 MGP_C57BL6NJ_G0023764.1 mouse_genomes_project 17 25704126 25708899 - MGP_C57BL6NJ_P0046590 Sox8 protein_coding protein_coding MGP_C57BL6NJ_T0046591.1 MGP_C57BL6NJ_G0023764.1 mouse_genomes_project 17 25706212 25708427 - MGP_C57BL6NJ_P0046591 Sox8 protein_coding protein_coding MGP_C57BL6NJ_T0046592.1 MGP_C57BL6NJ_G0023764.1 mouse_genomes_project 17 25706922 25708899 - MGP_C57BL6NJ_P0046592 Sox8 protein_coding protein_coding MGP_C57BL6NJ_T0010429.1 MGP_C57BL6NJ_G0008514.1 mouse_genomes_project 17 41779938 41780048 - Gm26429 miRNA miRNA MGP_C57BL6NJ_T0013542.1 MGP_C57BL6NJ_G0011587.1 mouse_genomes_project 17 26482976 26484143 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007137.1 MGP_C57BL6NJ_G0005872.1 mouse_genomes_project 17 59860518 59865129 - Gm16712 lincRNA lincRNA MGP_C57BL6NJ_T0003914.1 MGP_C57BL6NJ_G0003512.1 mouse_genomes_project 17 38872348 38881945 + 1700031A10Rik antisense antisense MGP_C57BL6NJ_T0048831.1 MGP_C57BL6NJ_G0024384.1 mouse_genomes_project 17 70414825 70542645 - MGP_C57BL6NJ_P0048831 Rab31 protein_coding protein_coding MGP_C57BL6NJ_T0100086.1 MGP_C57BL6NJ_G0038132.1 mouse_genomes_project 17 49327430 49327537 - Gm22474 snRNA snRNA MGP_C57BL6NJ_T0045901.1 MGP_C57BL6NJ_G0023539.1 mouse_genomes_project 17 5740681 5819010 - MGP_C57BL6NJ_P0045901 protein_coding protein_coding MGP_C57BL6NJ_T0001117.1 MGP_C57BL6NJ_G0001023.1 mouse_genomes_project 17 53711617 53712634 + TEC TEC MGP_C57BL6NJ_T0010433.1 MGP_C57BL6NJ_G0008518.1 mouse_genomes_project 17 52549345 52549490 - Gm44304 miRNA miRNA MGP_C57BL6NJ_T0011696.1 MGP_C57BL6NJ_G0009781.1 mouse_genomes_project 17 81668509 81668617 - Gm26124 misc_RNA misc_RNA MGP_C57BL6NJ_T0047468.1 MGP_C57BL6NJ_G0023963.1 mouse_genomes_project 17 35368376 35371271 + MGP_C57BL6NJ_P0047468 H2-Oa protein_coding protein_coding MGP_C57BL6NJ_T0047469.1 MGP_C57BL6NJ_G0023963.1 mouse_genomes_project 17 35368458 35371270 + H2-Oa protein_coding retained_intron MGP_C57BL6NJ_T0048692.1 MGP_C57BL6NJ_G0024327.1 mouse_genomes_project 17 60227038 60238464 - MGP_C57BL6NJ_P0048692 Plin3 protein_coding protein_coding MGP_C57BL6NJ_T0045936.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6293022 6718445 + MGP_C57BL6NJ_P0045936 Pde10a protein_coding protein_coding MGP_C57BL6NJ_T0045937.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6294363 6780994 + MGP_C57BL6NJ_P0045937 Pde10a protein_coding protein_coding MGP_C57BL6NJ_T0045940.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6582163 6684345 + Pde10a protein_coding retained_intron MGP_C57BL6NJ_T0045941.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6582249 6785143 + MGP_C57BL6NJ_P0045941 Pde10a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0045942.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6582549 6785151 + MGP_C57BL6NJ_P0045942 Pde10a protein_coding protein_coding MGP_C57BL6NJ_T0045943.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6633247 6780898 + MGP_C57BL6NJ_P0045943 Pde10a protein_coding protein_coding MGP_C57BL6NJ_T0045944.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6678446 6725549 + Pde10a protein_coding processed_transcript MGP_C57BL6NJ_T0045945.1 MGP_C57BL6NJ_G0023547.1 mouse_genomes_project 17 6719161 6782786 + MGP_C57BL6NJ_P0045945 Pde10a protein_coding protein_coding MGP_C57BL6NJ_T0046004.1 MGP_C57BL6NJ_G0023566.1 mouse_genomes_project 17 10995882 11017704 - MGP_C57BL6NJ_P0046004 Acat3 protein_coding protein_coding MGP_C57BL6NJ_T0046005.1 MGP_C57BL6NJ_G0023566.1 mouse_genomes_project 17 10996091 11017657 - MGP_C57BL6NJ_P0046005 Acat3 protein_coding protein_coding MGP_C57BL6NJ_T0046006.1 MGP_C57BL6NJ_G0023566.1 mouse_genomes_project 17 11001275 11024991 - Acat3 protein_coding retained_intron MGP_C57BL6NJ_T0047510.1 MGP_C57BL6NJ_G0023973.1 mouse_genomes_project 17 35554879 35562569 + MGP_C57BL6NJ_P0047510 H2-Ab1 protein_coding protein_coding MGP_C57BL6NJ_T0047511.1 MGP_C57BL6NJ_G0023973.1 mouse_genomes_project 17 35560252 35561185 + H2-Ab1 protein_coding retained_intron MGP_C57BL6NJ_T0047512.1 MGP_C57BL6NJ_G0023973.1 mouse_genomes_project 17 35561420 35562545 + H2-Ab1 protein_coding retained_intron MGP_C57BL6NJ_T0048669.1 MGP_C57BL6NJ_G0024314.1 mouse_genomes_project 17 59952975 59995808 + MGP_C57BL6NJ_P0048669 Chaf1a protein_coding protein_coding MGP_C57BL6NJ_T0048480.1 MGP_C57BL6NJ_G0024256.1 mouse_genomes_project 17 50853985 50899304 + Gm20517 protein_coding retained_intron MGP_C57BL6NJ_T0048481.1 MGP_C57BL6NJ_G0024256.1 mouse_genomes_project 17 50853994 50900628 + Gm20517 protein_coding retained_intron MGP_C57BL6NJ_T0048483.1 MGP_C57BL6NJ_G0024256.1 mouse_genomes_project 17 50854009 50937663 + MGP_C57BL6NJ_P0048483 Gm20517 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048093.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39009624 39040725 + MGP_C57BL6NJ_P0048093 Gabbr1 protein_coding protein_coding MGP_C57BL6NJ_T0048094.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39009678 39039948 + MGP_C57BL6NJ_P0048094 Gabbr1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0048095.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39009686 39014826 + MGP_C57BL6NJ_P0048095 Gabbr1 protein_coding protein_coding MGP_C57BL6NJ_T0048096.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39009857 39010499 + Gabbr1 protein_coding retained_intron MGP_C57BL6NJ_T0048097.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39010226 39014826 + MGP_C57BL6NJ_P0048097 Gabbr1 protein_coding protein_coding MGP_C57BL6NJ_T0048098.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39012308 39016486 + Gabbr1 protein_coding processed_transcript MGP_C57BL6NJ_T0048099.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39015989 39039962 + MGP_C57BL6NJ_P0048099 Gabbr1 protein_coding protein_coding MGP_C57BL6NJ_T0048100.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39016032 39021719 + MGP_C57BL6NJ_P0048100 Gabbr1 protein_coding protein_coding MGP_C57BL6NJ_T0048101.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39021073 39022225 + Gabbr1 protein_coding retained_intron MGP_C57BL6NJ_T0048102.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39028637 39030511 + Gabbr1 protein_coding retained_intron MGP_C57BL6NJ_T0048103.1 MGP_C57BL6NJ_G0024098.1 mouse_genomes_project 17 39036097 39037888 + Gabbr1 protein_coding retained_intron MGP_C57BL6NJ_T0102954.1 MGP_C57BL6NJ_G0040748.1 mouse_genomes_project 17 38425738 38425959 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049175.1 MGP_C57BL6NJ_G0024503.1 mouse_genomes_project 17 93505321 93519292 + MGP_C57BL6NJ_P0049175 Cript protein_coding protein_coding MGP_C57BL6NJ_T0049176.1 MGP_C57BL6NJ_G0024503.1 mouse_genomes_project 17 93505381 93508014 + Cript protein_coding retained_intron MGP_C57BL6NJ_T0049177.1 MGP_C57BL6NJ_G0024503.1 mouse_genomes_project 17 93505382 93518954 + MGP_C57BL6NJ_P0049177 Cript protein_coding protein_coding MGP_C57BL6NJ_T0046505.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25108353 25191742 + MGP_C57BL6NJ_P0046505 Ift140 protein_coding protein_coding MGP_C57BL6NJ_T0046506.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25108653 25199860 + MGP_C57BL6NJ_P0046506 Ift140 protein_coding protein_coding MGP_C57BL6NJ_T0046507.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25108661 25111165 + Ift140 protein_coding processed_transcript MGP_C57BL6NJ_T0046508.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25118743 25195628 + Ift140 protein_coding retained_intron MGP_C57BL6NJ_T0046509.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25118979 25130140 + MGP_C57BL6NJ_P0046509 Ift140 protein_coding protein_coding MGP_C57BL6NJ_T0046510.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25141832 25186930 + Ift140 protein_coding processed_transcript MGP_C57BL6NJ_T0046511.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25141881 25199868 + Ift140 protein_coding processed_transcript MGP_C57BL6NJ_T0046514.1 MGP_C57BL6NJ_G0023743.1 mouse_genomes_project 17 25189611 25192085 + Ift140 protein_coding retained_intron MGP_C57BL6NJ_T0046983.1 MGP_C57BL6NJ_G0023850.1 mouse_genomes_project 17 29131558 29139444 + MGP_C57BL6NJ_P0046983 Lhfpl5 protein_coding protein_coding MGP_C57BL6NJ_T0102905.1 MGP_C57BL6NJ_G0040699.1 mouse_genomes_project 17 19302820 19375367 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0007094.1 MGP_C57BL6NJ_G0005841.1 mouse_genomes_project 17 29759225 29781922 + Gm16194 lincRNA lincRNA MGP_C57BL6NJ_T0007095.1 MGP_C57BL6NJ_G0005841.1 mouse_genomes_project 17 29759250 29771189 + Gm16194 lincRNA lincRNA MGP_C57BL6NJ_T0007096.1 MGP_C57BL6NJ_G0005841.1 mouse_genomes_project 17 29759261 29766086 + Gm16194 lincRNA lincRNA MGP_C57BL6NJ_T0048068.1 MGP_C57BL6NJ_G0024093.1 mouse_genomes_project 17 38909110 38917596 + MGP_C57BL6NJ_P0048068 Znrd1as protein_coding protein_coding MGP_C57BL6NJ_T0048069.1 MGP_C57BL6NJ_G0024093.1 mouse_genomes_project 17 38909137 38916915 + Znrd1as protein_coding retained_intron MGP_C57BL6NJ_T0048070.1 MGP_C57BL6NJ_G0024093.1 mouse_genomes_project 17 38909159 38917596 + MGP_C57BL6NJ_P0048070 Znrd1as protein_coding protein_coding MGP_C57BL6NJ_T0047566.1 MGP_C57BL6NJ_G0023986.1 mouse_genomes_project 17 35995532 35998132 - MGP_C57BL6NJ_P0047566 Rnf5 protein_coding protein_coding MGP_C57BL6NJ_T0047567.1 MGP_C57BL6NJ_G0023986.1 mouse_genomes_project 17 35995755 35997818 - Rnf5 protein_coding retained_intron MGP_C57BL6NJ_T0047568.1 MGP_C57BL6NJ_G0023986.1 mouse_genomes_project 17 35996223 35998103 - Rnf5 protein_coding retained_intron MGP_C57BL6NJ_T0048604.1 MGP_C57BL6NJ_G0024286.1 mouse_genomes_project 17 53771959 53786165 - MGP_C57BL6NJ_P0048604 Dazl protein_coding protein_coding MGP_C57BL6NJ_T0048605.1 MGP_C57BL6NJ_G0024286.1 mouse_genomes_project 17 53773814 53785514 - MGP_C57BL6NJ_P0048605 Dazl protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003905.1 MGP_C57BL6NJ_G0003503.1 mouse_genomes_project 17 36604782 36610119 - Gm20522 antisense antisense MGP_C57BL6NJ_T0102944.1 MGP_C57BL6NJ_G0040738.1 mouse_genomes_project 17 37914713 37946538 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049179.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93757876 93768887 - MGP_C57BL6NJ_P0049179 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049180.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93757878 93768856 - MGP_C57BL6NJ_P0049180 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049181.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93759006 93768832 - MGP_C57BL6NJ_P0049181 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049182.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93759188 93768847 - MGP_C57BL6NJ_P0049182 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049183.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93759976 93768826 - MGP_C57BL6NJ_P0049183 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049184.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93760449 93768832 - MGP_C57BL6NJ_P0049184 Mcfd2 protein_coding protein_coding MGP_C57BL6NJ_T0049185.1 MGP_C57BL6NJ_G0024505.1 mouse_genomes_project 17 93761743 93768815 - Mcfd2 protein_coding processed_transcript MGP_C57BL6NJ_T0003908.1 MGP_C57BL6NJ_G0003506.1 mouse_genomes_project 17 37301805 37313870 + Gm20483 antisense antisense MGP_C57BL6NJ_T0102198.1 MGP_C57BL6NJ_G0040210.1 mouse_genomes_project 17 57521792 57522488 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0007152.1 MGP_C57BL6NJ_G0005882.1 mouse_genomes_project 17 85201666 85204990 + Gm17315 lincRNA lincRNA MGP_C57BL6NJ_T0100091.1 MGP_C57BL6NJ_G0038137.1 mouse_genomes_project 17 61812638 61812750 + Gm25102 snRNA snRNA MGP_C57BL6NJ_T0047133.1 MGP_C57BL6NJ_G0023886.1 mouse_genomes_project 17 31931703 31936047 - MGP_C57BL6NJ_P0047133 Tff3 protein_coding protein_coding MGP_C57BL6NJ_T0011698.1 MGP_C57BL6NJ_G0009783.1 mouse_genomes_project 17 91990144 91990232 + Gm27435 misc_RNA misc_RNA MGP_C57BL6NJ_T0048116.1 MGP_C57BL6NJ_G0024111.1 mouse_genomes_project 17 39327388 39328413 - MGP_C57BL6NJ_P0048116 protein_coding protein_coding MGP_C57BL6NJ_T0011685.1 MGP_C57BL6NJ_G0009770.1 mouse_genomes_project 17 33970537 33970812 - Gm25667 misc_RNA misc_RNA MGP_C57BL6NJ_T0046170.1 MGP_C57BL6NJ_G0023639.1 mouse_genomes_project 17 20984057 20991078 + MGP_C57BL6NJ_P0046170 Zfp52 protein_coding protein_coding MGP_C57BL6NJ_T0048436.1 MGP_C57BL6NJ_G0024242.1 mouse_genomes_project 17 50049634 50051477 + MGP_C57BL6NJ_P0048436 Tbcc protein_coding protein_coding MGP_C57BL6NJ_T0047772.1 MGP_C57BL6NJ_G0024026.1 mouse_genomes_project 17 36610051 36610589 + D17H6S53E protein_coding retained_intron MGP_C57BL6NJ_T0047773.1 MGP_C57BL6NJ_G0024026.1 mouse_genomes_project 17 36610064 36614193 + MGP_C57BL6NJ_P0047773 D17H6S53E protein_coding protein_coding MGP_C57BL6NJ_T0050500.1 MGP_C57BL6NJ_G0024968.1 mouse_genomes_project 18 76799392 76804753 + MGP_C57BL6NJ_P0050500 Cxxc1 protein_coding protein_coding MGP_C57BL6NJ_T0007169.1 MGP_C57BL6NJ_G0005895.1 mouse_genomes_project 18 1793831 1837494 + lincRNA lincRNA MGP_C57BL6NJ_T0050675.1 MGP_C57BL6NJ_G0025021.1 mouse_genomes_project 18 88019004 88032065 + MGP_C57BL6NJ_P0050675 Fam69c protein_coding protein_coding MGP_C57BL6NJ_T0050676.1 MGP_C57BL6NJ_G0025021.1 mouse_genomes_project 18 88019227 88039991 + MGP_C57BL6NJ_P0050676 Fam69c protein_coding protein_coding MGP_C57BL6NJ_T0050677.1 MGP_C57BL6NJ_G0025021.1 mouse_genomes_project 18 88019262 88038959 + Fam69c protein_coding processed_transcript MGP_C57BL6NJ_T0050678.1 MGP_C57BL6NJ_G0025021.1 mouse_genomes_project 18 88019868 88031842 + Fam69c protein_coding processed_transcript MGP_C57BL6NJ_T0050039.1 MGP_C57BL6NJ_G0024812.1 mouse_genomes_project 18 44660600 45069596 - MGP_C57BL6NJ_P0050039 Mcc protein_coding protein_coding MGP_C57BL6NJ_T0050040.1 MGP_C57BL6NJ_G0024812.1 mouse_genomes_project 18 44666370 44904291 - MGP_C57BL6NJ_P0050040 Mcc protein_coding protein_coding MGP_C57BL6NJ_T0050041.1 MGP_C57BL6NJ_G0024812.1 mouse_genomes_project 18 44756221 44758892 - Mcc protein_coding retained_intron MGP_C57BL6NJ_T0050042.1 MGP_C57BL6NJ_G0024812.1 mouse_genomes_project 18 44900566 44904309 - Mcc protein_coding retained_intron MGP_C57BL6NJ_T0050043.1 MGP_C57BL6NJ_G0024812.1 mouse_genomes_project 18 44958290 44973900 - Mcc protein_coding processed_transcript MGP_C57BL6NJ_T0049349.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3077029 3175262 - MGP_C57BL6NJ_P0049349 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049350.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3077387 3215991 - MGP_C57BL6NJ_P0049350 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049351.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3077799 3216044 - MGP_C57BL6NJ_P0049351 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049352.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3077819 3216182 - MGP_C57BL6NJ_P0049352 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049353.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3079034 3215976 - MGP_C57BL6NJ_P0049353 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049354.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3079158 3215972 - MGP_C57BL6NJ_P0049354 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049355.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3085562 3087247 - Arhgap12 protein_coding retained_intron MGP_C57BL6NJ_T0049356.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3091945 3155475 - Arhgap12 protein_coding processed_transcript MGP_C57BL6NJ_T0049357.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3105246 3174879 - MGP_C57BL6NJ_P0049357 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049358.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3113559 3216054 - Arhgap12 protein_coding processed_transcript MGP_C57BL6NJ_T0049359.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3117847 3127271 - Arhgap12 protein_coding processed_transcript MGP_C57BL6NJ_T0049360.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3117951 3216039 - MGP_C57BL6NJ_P0049360 Arhgap12 protein_coding protein_coding MGP_C57BL6NJ_T0049361.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3120359 3216025 - Arhgap12 protein_coding processed_transcript MGP_C57BL6NJ_T0049362.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3123060 3216019 - Arhgap12 protein_coding processed_transcript MGP_C57BL6NJ_T0049363.1 MGP_C57BL6NJ_G0024535.1 mouse_genomes_project 18 3125984 3128428 - Arhgap12 protein_coding retained_intron MGP_C57BL6NJ_T0003975.1 MGP_C57BL6NJ_G0003560.1 mouse_genomes_project 18 63264647 63265986 - Gm38165 antisense antisense MGP_C57BL6NJ_T0049586.1 MGP_C57BL6NJ_G0024616.1 mouse_genomes_project 18 24211537 24506692 - MGP_C57BL6NJ_P0049586 Celf4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049587.1 MGP_C57BL6NJ_G0024616.1 mouse_genomes_project 18 24211550 24507120 - MGP_C57BL6NJ_P0049587 Celf4 protein_coding protein_coding MGP_C57BL6NJ_T0049588.1 MGP_C57BL6NJ_G0024616.1 mouse_genomes_project 18 24211550 24507120 - MGP_C57BL6NJ_P0049588 Celf4 protein_coding protein_coding MGP_C57BL6NJ_T0049940.1 MGP_C57BL6NJ_G0024769.1 mouse_genomes_project 18 37993319 38005700 + MGP_C57BL6NJ_P0049940 0610009O20Rik protein_coding protein_coding MGP_C57BL6NJ_T0007197.1 MGP_C57BL6NJ_G0005915.1 mouse_genomes_project 18 45080278 45083569 + Gm43425 lincRNA lincRNA MGP_C57BL6NJ_T0013679.1 MGP_C57BL6NJ_G0011724.1 mouse_genomes_project 18 80014368 80015342 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049519.1 MGP_C57BL6NJ_G0024591.1 mouse_genomes_project 18 19459086 19483994 + MGP_C57BL6NJ_P0049519 protein_coding protein_coding MGP_C57BL6NJ_T0050227.1 MGP_C57BL6NJ_G0024883.1 mouse_genomes_project 18 62416106 62422888 + MGP_C57BL6NJ_P0050227 Arsi protein_coding protein_coding MGP_C57BL6NJ_T0102204.1 MGP_C57BL6NJ_G0040214.1 mouse_genomes_project 18 36756660 36758402 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102205.1 MGP_C57BL6NJ_G0040214.1 mouse_genomes_project 18 36758165 36759186 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0049823.1 MGP_C57BL6NJ_G0024705.1 mouse_genomes_project 18 36611184 37558029 + MGP_C57BL6NJ_P0049823 protein_coding protein_coding MGP_C57BL6NJ_T0010488.1 MGP_C57BL6NJ_G0008573.1 mouse_genomes_project 18 68187377 68187447 - Mir694 miRNA miRNA MGP_C57BL6NJ_T0050035.1 MGP_C57BL6NJ_G0024810.1 mouse_genomes_project 18 44569945 44594541 + MGP_C57BL6NJ_P0050035 Myot protein_coding protein_coding MGP_C57BL6NJ_T0050036.1 MGP_C57BL6NJ_G0024810.1 mouse_genomes_project 18 44569945 44594541 + MGP_C57BL6NJ_P0050036 Myot protein_coding protein_coding MGP_C57BL6NJ_T0010475.1 MGP_C57BL6NJ_G0008560.1 mouse_genomes_project 18 57677256 57677316 + Mir1258 miRNA miRNA MGP_C57BL6NJ_T0050453.1 MGP_C57BL6NJ_G0024952.1 mouse_genomes_project 18 72196423 72218152 + Ccdc68 protein_coding processed_transcript MGP_C57BL6NJ_T0050454.1 MGP_C57BL6NJ_G0024952.1 mouse_genomes_project 18 72196463 72245300 + MGP_C57BL6NJ_P0050454 Ccdc68 protein_coding protein_coding MGP_C57BL6NJ_T0050455.1 MGP_C57BL6NJ_G0024952.1 mouse_genomes_project 18 72196567 72213060 + Ccdc68 protein_coding processed_transcript MGP_C57BL6NJ_T0050456.1 MGP_C57BL6NJ_G0024952.1 mouse_genomes_project 18 72196573 72245300 + MGP_C57BL6NJ_P0050456 Ccdc68 protein_coding protein_coding MGP_C57BL6NJ_T0050060.1 MGP_C57BL6NJ_G0024819.1 mouse_genomes_project 18 46968678 46985702 - MGP_C57BL6NJ_P0050060 Ticam2 protein_coding protein_coding MGP_C57BL6NJ_T0050062.1 MGP_C57BL6NJ_G0024819.1 mouse_genomes_project 18 46982381 46985702 - Ticam2 protein_coding retained_intron MGP_C57BL6NJ_T0010469.1 MGP_C57BL6NJ_G0008554.1 mouse_genomes_project 18 41324610 41324701 - Gm44476 miRNA miRNA MGP_C57BL6NJ_T0049627.1 MGP_C57BL6NJ_G0024640.1 mouse_genomes_project 18 32522964 32537378 - MGP_C57BL6NJ_P0049627 Stard4 protein_coding protein_coding MGP_C57BL6NJ_T0049628.1 MGP_C57BL6NJ_G0024640.1 mouse_genomes_project 18 32527083 32537473 - MGP_C57BL6NJ_P0049628 Stard4 protein_coding protein_coding MGP_C57BL6NJ_T0049629.1 MGP_C57BL6NJ_G0024640.1 mouse_genomes_project 18 32528345 32537528 - Stard4 protein_coding retained_intron MGP_C57BL6NJ_T0013683.1 MGP_C57BL6NJ_G0011728.1 mouse_genomes_project 18 93225806 93226265 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050457.1 MGP_C57BL6NJ_G0024953.1 mouse_genomes_project 18 72256301 72418004 - MGP_C57BL6NJ_P0050457 Rab27b protein_coding protein_coding MGP_C57BL6NJ_T0050458.1 MGP_C57BL6NJ_G0024953.1 mouse_genomes_project 18 72260826 72324760 - MGP_C57BL6NJ_P0050458 Rab27b protein_coding protein_coding MGP_C57BL6NJ_T0050459.1 MGP_C57BL6NJ_G0024953.1 mouse_genomes_project 18 72260826 72324760 - MGP_C57BL6NJ_P0050459 Rab27b protein_coding protein_coding MGP_C57BL6NJ_T0050460.1 MGP_C57BL6NJ_G0024953.1 mouse_genomes_project 18 72414562 72417973 - Rab27b protein_coding retained_intron MGP_C57BL6NJ_T0049384.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095469 5155027 + MGP_C57BL6NJ_P0049384 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049385.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095473 5098317 + MGP_C57BL6NJ_P0049385 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049386.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095694 5148597 + MGP_C57BL6NJ_P0049386 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049387.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095824 5098242 + MGP_C57BL6NJ_P0049387 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049388.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095825 5155021 + MGP_C57BL6NJ_P0049388 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049389.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5095869 5098419 + Wac protein_coding retained_intron MGP_C57BL6NJ_T0049390.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5096158 5142705 + MGP_C57BL6NJ_P0049390 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049391.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5096344 5142898 + MGP_C57BL6NJ_P0049391 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049392.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5096365 5132113 + MGP_C57BL6NJ_P0049392 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049393.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5098340 5148104 + MGP_C57BL6NJ_P0049393 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049394.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5132095 5142905 + MGP_C57BL6NJ_P0049394 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049395.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5137225 5143001 + Wac protein_coding retained_intron MGP_C57BL6NJ_T0049396.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5137243 5145117 + MGP_C57BL6NJ_P0049396 Wac protein_coding protein_coding MGP_C57BL6NJ_T0049397.1 MGP_C57BL6NJ_G0024543.1 mouse_genomes_project 18 5144252 5205554 + MGP_C57BL6NJ_P0049397 Wac protein_coding protein_coding MGP_C57BL6NJ_T0050178.1 MGP_C57BL6NJ_G0024867.1 mouse_genomes_project 18 60214808 60443413 + MGP_C57BL6NJ_P0050178 Adamts19 protein_coding protein_coding MGP_C57BL6NJ_T0049441.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9810942 9824411 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0049442.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9810942 9833292 + MGP_C57BL6NJ_P0049442 3110002H16Rik protein_coding protein_coding MGP_C57BL6NJ_T0049443.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9810964 9823866 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0049444.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9810977 9833269 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0049445.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9822864 9828210 + MGP_C57BL6NJ_P0049445 3110002H16Rik protein_coding protein_coding MGP_C57BL6NJ_T0049446.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9823819 9831515 + MGP_C57BL6NJ_P0049446 3110002H16Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049447.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9828725 9833269 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0049448.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9828949 9833226 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0049449.1 MGP_C57BL6NJ_G0024563.1 mouse_genomes_project 18 9832286 9833269 + 3110002H16Rik protein_coding retained_intron MGP_C57BL6NJ_T0050273.1 MGP_C57BL6NJ_G0024902.1 mouse_genomes_project 18 63787853 63792133 + MGP_C57BL6NJ_P0050273 Gm9949 protein_coding protein_coding MGP_C57BL6NJ_T0049888.1 MGP_C57BL6NJ_G0024756.1 mouse_genomes_project 18 37450817 37559702 + MGP_C57BL6NJ_P0049888 Pcdhga10 protein_coding protein_coding MGP_C57BL6NJ_T0049697.1 MGP_C57BL6NJ_G0024666.1 mouse_genomes_project 18 34786355 34967048 - MGP_C57BL6NJ_P0049697 Sil1 protein_coding protein_coding MGP_C57BL6NJ_T0007207.1 MGP_C57BL6NJ_G0005923.1 mouse_genomes_project 18 63220916 63236781 - Carmn lincRNA lincRNA MGP_C57BL6NJ_T0007208.1 MGP_C57BL6NJ_G0005923.1 mouse_genomes_project 18 63222265 63236828 - Carmn lincRNA lincRNA MGP_C57BL6NJ_T0050141.1 MGP_C57BL6NJ_G0024852.1 mouse_genomes_project 18 57561506 57639516 + MGP_C57BL6NJ_P0050141 Gramd3 protein_coding protein_coding MGP_C57BL6NJ_T0050027.1 MGP_C57BL6NJ_G0024804.1 mouse_genomes_project 18 44334656 44338793 + MGP_C57BL6NJ_P0050027 Spink12 protein_coding protein_coding MGP_C57BL6NJ_T0050130.1 MGP_C57BL6NJ_G0024845.1 mouse_genomes_project 18 54087170 54134097 + MGP_C57BL6NJ_P0050130 Snx2 protein_coding protein_coding MGP_C57BL6NJ_T0013673.1 MGP_C57BL6NJ_G0011718.1 mouse_genomes_project 18 57072821 57073745 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050383.1 MGP_C57BL6NJ_G0024946.1 mouse_genomes_project 18 70396440 70439616 - MGP_C57BL6NJ_P0050383 Fam210a protein_coding protein_coding MGP_C57BL6NJ_T0050384.1 MGP_C57BL6NJ_G0024946.1 mouse_genomes_project 18 70412170 70439485 - MGP_C57BL6NJ_P0050384 Fam210a protein_coding protein_coding MGP_C57BL6NJ_T0049803.1 MGP_C57BL6NJ_G0024697.1 mouse_genomes_project 18 36413366 36415908 - Dnd1 protein_coding retained_intron MGP_C57BL6NJ_T0049804.1 MGP_C57BL6NJ_G0024697.1 mouse_genomes_project 18 36413368 36415892 - MGP_C57BL6NJ_P0049804 Dnd1 protein_coding protein_coding MGP_C57BL6NJ_T0049805.1 MGP_C57BL6NJ_G0024697.1 mouse_genomes_project 18 36413370 36415892 - Dnd1 protein_coding retained_intron MGP_C57BL6NJ_T0013666.1 MGP_C57BL6NJ_G0011711.1 mouse_genomes_project 18 50896371 50897116 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050315.1 MGP_C57BL6NJ_G0024919.1 mouse_genomes_project 18 66727028 67098995 + MGP_C57BL6NJ_P0050315 Nedd4l protein_coding protein_coding MGP_C57BL6NJ_T0050316.1 MGP_C57BL6NJ_G0024919.1 mouse_genomes_project 18 67016045 67093055 + MGP_C57BL6NJ_P0050316 Nedd4l protein_coding protein_coding MGP_C57BL6NJ_T0050471.1 MGP_C57BL6NJ_G0024958.1 mouse_genomes_project 18 72874639 72933949 + MGP_C57BL6NJ_P0050471 Mbd2 protein_coding protein_coding MGP_C57BL6NJ_T0050472.1 MGP_C57BL6NJ_G0024958.1 mouse_genomes_project 18 72874784 72890815 + MGP_C57BL6NJ_P0050472 Mbd2 protein_coding protein_coding MGP_C57BL6NJ_T0050473.1 MGP_C57BL6NJ_G0024958.1 mouse_genomes_project 18 72888691 72930611 + MGP_C57BL6NJ_P0050473 Mbd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050474.1 MGP_C57BL6NJ_G0024958.1 mouse_genomes_project 18 72901157 72925124 + Mbd2 protein_coding retained_intron MGP_C57BL6NJ_T0050475.1 MGP_C57BL6NJ_G0024958.1 mouse_genomes_project 18 72925663 72933595 + Mbd2 protein_coding retained_intron MGP_C57BL6NJ_T0049491.1 MGP_C57BL6NJ_G0024576.1 mouse_genomes_project 18 12663773 12784930 + MGP_C57BL6NJ_P0049491 Taf4b protein_coding protein_coding MGP_C57BL6NJ_T0049492.1 MGP_C57BL6NJ_G0024576.1 mouse_genomes_project 18 12664195 12782699 + MGP_C57BL6NJ_P0049492 Taf4b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050190.1 MGP_C57BL6NJ_G0024873.1 mouse_genomes_project 18 61839662 61858320 + MGP_C57BL6NJ_P0050190 Iigp1 protein_coding protein_coding MGP_C57BL6NJ_T0050191.1 MGP_C57BL6NJ_G0024873.1 mouse_genomes_project 18 61839662 61858320 + MGP_C57BL6NJ_P0050191 Iigp1 protein_coding protein_coding MGP_C57BL6NJ_T0007191.1 MGP_C57BL6NJ_G0005911.1 mouse_genomes_project 18 34305059 34311599 - Gm26538 lincRNA lincRNA MGP_C57BL6NJ_T0049630.1 MGP_C57BL6NJ_G0024641.1 mouse_genomes_project 18 32777328 32803937 - MGP_C57BL6NJ_P0049630 Nrep protein_coding protein_coding MGP_C57BL6NJ_T0049631.1 MGP_C57BL6NJ_G0024641.1 mouse_genomes_project 18 32777328 32804345 - MGP_C57BL6NJ_P0049631 Nrep protein_coding protein_coding MGP_C57BL6NJ_T0049632.1 MGP_C57BL6NJ_G0024641.1 mouse_genomes_project 18 32777328 32804044 - MGP_C57BL6NJ_P0049632 Nrep protein_coding protein_coding MGP_C57BL6NJ_T0013661.1 MGP_C57BL6NJ_G0011706.1 mouse_genomes_project 18 40649977 40650418 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011708.1 MGP_C57BL6NJ_G0009793.1 mouse_genomes_project 18 14210065 14210415 - Gm24385 misc_RNA misc_RNA MGP_C57BL6NJ_T0050350.1 MGP_C57BL6NJ_G0024926.1 mouse_genomes_project 18 67874938 67879389 - MGP_C57BL6NJ_P0050350 Rax protein_coding protein_coding MGP_C57BL6NJ_T0012094.1 MGP_C57BL6NJ_G0010157.1 mouse_genomes_project 18 37469331 37559699 + MGP_C57BL6NJ_P0012094 Pcdhgb8 polymorphic_pseudogene polymorphic_pseudogene MGP_C57BL6NJ_T0101403.1 MGP_C57BL6NJ_G0039449.1 mouse_genomes_project 18 30612911 30613044 - Gm25396 snoRNA snoRNA MGP_C57BL6NJ_T0099359.1 MGP_C57BL6NJ_G0037417.1 mouse_genomes_project 18 2612243 2614475 - Gm26575 sense_intronic sense_intronic MGP_C57BL6NJ_T0049684.1 MGP_C57BL6NJ_G0024659.1 mouse_genomes_project 18 34281561 34347199 + MGP_C57BL6NJ_P0049684 Kdm3b protein_coding protein_coding MGP_C57BL6NJ_T0049685.1 MGP_C57BL6NJ_G0024659.1 mouse_genomes_project 18 34327168 34346834 + MGP_C57BL6NJ_P0049685 Kdm3b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011716.1 MGP_C57BL6NJ_G0009801.1 mouse_genomes_project 18 38388500 38388571 + Gm27369 misc_RNA misc_RNA MGP_C57BL6NJ_T0007181.1 MGP_C57BL6NJ_G0005903.1 mouse_genomes_project 18 30961230 30969140 - Gm26533 lincRNA lincRNA MGP_C57BL6NJ_T0050529.1 MGP_C57BL6NJ_G0024978.1 mouse_genomes_project 18 78124248 78414185 - MGP_C57BL6NJ_P0050529 Ctif protein_coding protein_coding MGP_C57BL6NJ_T0049874.1 MGP_C57BL6NJ_G0024747.1 mouse_genomes_project 18 37389157 37559702 + MGP_C57BL6NJ_P0049874 Pcdhgb2 protein_coding protein_coding MGP_C57BL6NJ_T0049875.1 MGP_C57BL6NJ_G0024747.1 mouse_genomes_project 18 37389164 37392712 + Pcdhgb2 protein_coding retained_intron MGP_C57BL6NJ_T0013656.1 MGP_C57BL6NJ_G0011701.1 mouse_genomes_project 18 37127086 37127957 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050160.1 MGP_C57BL6NJ_G0024857.1 mouse_genomes_project 18 57941611 58115984 - MGP_C57BL6NJ_P0050160 March3 protein_coding protein_coding MGP_C57BL6NJ_T0050161.1 MGP_C57BL6NJ_G0024857.1 mouse_genomes_project 18 57956532 57992669 - MGP_C57BL6NJ_P0050161 March3 protein_coding protein_coding MGP_C57BL6NJ_T0050162.1 MGP_C57BL6NJ_G0024857.1 mouse_genomes_project 18 57984325 58115951 - March3 protein_coding retained_intron MGP_C57BL6NJ_T0099053.1 MGP_C57BL6NJ_G0037117.1 mouse_genomes_project 18 34132444 34132563 + n-R5s25 rRNA rRNA MGP_C57BL6NJ_T0010486.1 MGP_C57BL6NJ_G0008571.1 mouse_genomes_project 18 63220487 63220550 - Mir143 miRNA miRNA MGP_C57BL6NJ_T0050488.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76410675 76432757 + MGP_C57BL6NJ_P0050488 Mro protein_coding protein_coding MGP_C57BL6NJ_T0050489.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76410677 76433161 + MGP_C57BL6NJ_P0050489 Mro protein_coding protein_coding MGP_C57BL6NJ_T0050490.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76410684 76435360 + Mro protein_coding processed_transcript MGP_C57BL6NJ_T0050491.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76410692 76432757 + MGP_C57BL6NJ_P0050491 Mro protein_coding protein_coding MGP_C57BL6NJ_T0050492.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76416372 76424385 + Mro protein_coding retained_intron MGP_C57BL6NJ_T0050493.1 MGP_C57BL6NJ_G0024964.1 mouse_genomes_project 18 76416413 76426158 + MGP_C57BL6NJ_P0050493 Mro protein_coding protein_coding MGP_C57BL6NJ_T0011717.1 MGP_C57BL6NJ_G0009802.1 mouse_genomes_project 18 38388707 38388826 + Gm27804 misc_RNA misc_RNA MGP_C57BL6NJ_T0050599.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196582 83201311 + Gm16286 protein_coding processed_transcript MGP_C57BL6NJ_T0050601.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196615 83202550 + MGP_C57BL6NJ_P0050601 Gm16286 protein_coding protein_coding MGP_C57BL6NJ_T0050602.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196647 83200585 + Gm16286 protein_coding retained_intron MGP_C57BL6NJ_T0050603.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196663 83197594 + Gm16286 protein_coding retained_intron MGP_C57BL6NJ_T0050605.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196684 83202541 + MGP_C57BL6NJ_P0050605 Gm16286 protein_coding protein_coding MGP_C57BL6NJ_T0050607.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196712 83202559 + MGP_C57BL6NJ_P0050607 Gm16286 protein_coding protein_coding MGP_C57BL6NJ_T0050608.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196730 83197502 + Gm16286 protein_coding retained_intron MGP_C57BL6NJ_T0050609.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83196735 83197594 + Gm16286 protein_coding retained_intron MGP_C57BL6NJ_T0050610.1 MGP_C57BL6NJ_G0025003.1 mouse_genomes_project 18 83197077 83201305 + Gm16286 protein_coding processed_transcript MGP_C57BL6NJ_T0049737.1 MGP_C57BL6NJ_G0024675.1 mouse_genomes_project 18 35252607 35281157 + 1700066B19Rik protein_coding processed_transcript MGP_C57BL6NJ_T0049744.1 MGP_C57BL6NJ_G0024675.1 mouse_genomes_project 18 35276562 35282256 + MGP_C57BL6NJ_P0049744 1700066B19Rik protein_coding protein_coding MGP_C57BL6NJ_T0010470.1 MGP_C57BL6NJ_G0008555.1 mouse_genomes_project 18 42388818 42388881 + Gm22697 miRNA miRNA MGP_C57BL6NJ_T0050591.1 MGP_C57BL6NJ_G0024997.1 mouse_genomes_project 18 81011480 81078653 - MGP_C57BL6NJ_P0050591 Slc14a2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050592.1 MGP_C57BL6NJ_G0024997.1 mouse_genomes_project 18 81011480 81078653 - MGP_C57BL6NJ_P0050592 Slc14a2 protein_coding protein_coding MGP_C57BL6NJ_T0050593.1 MGP_C57BL6NJ_G0024997.1 mouse_genomes_project 18 81050361 81075999 - MGP_C57BL6NJ_P0050593 Slc14a2 protein_coding protein_coding MGP_C57BL6NJ_T0049572.1 MGP_C57BL6NJ_G0024610.1 mouse_genomes_project 18 23302637 23338810 + MGP_C57BL6NJ_P0049572 Elp2 protein_coding protein_coding MGP_C57BL6NJ_T0049615.1 MGP_C57BL6NJ_G0024634.1 mouse_genomes_project 18 31457329 31488313 + MGP_C57BL6NJ_P0049615 Ercc3 protein_coding protein_coding MGP_C57BL6NJ_T0049616.1 MGP_C57BL6NJ_G0024634.1 mouse_genomes_project 18 31457383 31488313 + Ercc3 protein_coding retained_intron MGP_C57BL6NJ_T0049617.1 MGP_C57BL6NJ_G0024634.1 mouse_genomes_project 18 31475430 31488253 + Ercc3 protein_coding processed_transcript MGP_C57BL6NJ_T0010460.1 MGP_C57BL6NJ_G0008545.1 mouse_genomes_project 18 23119960 23120021 - Mir187 miRNA miRNA MGP_C57BL6NJ_T0050385.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70439637 70471878 + MGP_C57BL6NJ_P0050385 Rnmt protein_coding protein_coding MGP_C57BL6NJ_T0050386.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70439674 70448700 + MGP_C57BL6NJ_P0050386 Rnmt protein_coding protein_coding MGP_C57BL6NJ_T0050387.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70439680 70454733 + Rnmt protein_coding retained_intron MGP_C57BL6NJ_T0050388.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70439682 70468932 + MGP_C57BL6NJ_P0050388 Rnmt protein_coding protein_coding MGP_C57BL6NJ_T0050389.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70439704 70450965 + MGP_C57BL6NJ_P0050389 Rnmt protein_coding protein_coding MGP_C57BL6NJ_T0050390.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70444279 70445477 + MGP_C57BL6NJ_P0050390 Rnmt protein_coding protein_coding MGP_C57BL6NJ_T0050391.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70464516 70466270 + Rnmt protein_coding retained_intron MGP_C57BL6NJ_T0050392.1 MGP_C57BL6NJ_G0024947.1 mouse_genomes_project 18 70466022 70471877 + Rnmt protein_coding processed_transcript MGP_C57BL6NJ_T0011722.1 MGP_C57BL6NJ_G0009807.1 mouse_genomes_project 18 56687298 56687583 - Gm24514 misc_RNA misc_RNA MGP_C57BL6NJ_T0101422.1 MGP_C57BL6NJ_G0039468.1 mouse_genomes_project 18 77655815 77655880 + Gm23301 snoRNA snoRNA MGP_C57BL6NJ_T0098845.1 MGP_C57BL6NJ_G0036909.1 mouse_genomes_project 18 61892058 61892701 + pseudogene pseudogene MGP_C57BL6NJ_T0010473.1 MGP_C57BL6NJ_G0008558.1 mouse_genomes_project 18 57067389 57067479 - Gm23335 miRNA miRNA MGP_C57BL6NJ_T0049427.1 MGP_C57BL6NJ_G0024557.1 mouse_genomes_project 18 8120229 8215581 + MGP_C57BL6NJ_P0049427 Mib1 protein_coding protein_coding MGP_C57BL6NJ_T0049428.1 MGP_C57BL6NJ_G0024557.1 mouse_genomes_project 18 8120336 8209177 + MGP_C57BL6NJ_P0049428 Mib1 protein_coding protein_coding MGP_C57BL6NJ_T0049429.1 MGP_C57BL6NJ_G0024557.1 mouse_genomes_project 18 8120425 8151428 + Mib1 protein_coding retained_intron MGP_C57BL6NJ_T0049430.1 MGP_C57BL6NJ_G0024557.1 mouse_genomes_project 18 8157746 8215707 + MGP_C57BL6NJ_P0049430 Mib1 protein_coding protein_coding MGP_C57BL6NJ_T0049431.1 MGP_C57BL6NJ_G0024557.1 mouse_genomes_project 18 8195309 8214631 + MGP_C57BL6NJ_P0049431 Mib1 protein_coding protein_coding MGP_C57BL6NJ_T0050163.1 MGP_C57BL6NJ_G0024858.1 mouse_genomes_project 18 58149062 58168550 - MGP_C57BL6NJ_P0050163 C330018D20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050164.1 MGP_C57BL6NJ_G0024858.1 mouse_genomes_project 18 58150843 58168536 - MGP_C57BL6NJ_P0050164 C330018D20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050165.1 MGP_C57BL6NJ_G0024858.1 mouse_genomes_project 18 58161701 58168428 - C330018D20Rik protein_coding processed_transcript MGP_C57BL6NJ_T0050253.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117221 63152689 + MGP_C57BL6NJ_P0050253 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050254.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117260 63150932 + MGP_C57BL6NJ_P0050254 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050255.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117265 63148259 + MGP_C57BL6NJ_P0050255 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050256.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117265 63144744 + MGP_C57BL6NJ_P0050256 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050257.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117275 63144890 + MGP_C57BL6NJ_P0050257 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050258.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117282 63120186 + Csnk1a1 protein_coding retained_intron MGP_C57BL6NJ_T0050259.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117286 63150810 + MGP_C57BL6NJ_P0050259 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050260.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63117636 63150159 + MGP_C57BL6NJ_P0050260 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050261.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63138173 63144746 + MGP_C57BL6NJ_P0050261 Csnk1a1 protein_coding protein_coding MGP_C57BL6NJ_T0050262.1 MGP_C57BL6NJ_G0024894.1 mouse_genomes_project 18 63145471 63149126 + Csnk1a1 protein_coding processed_transcript MGP_C57BL6NJ_T0050520.1 MGP_C57BL6NJ_G0024973.1 mouse_genomes_project 18 77577220 77603255 - MGP_C57BL6NJ_P0050520 Lipg protein_coding protein_coding MGP_C57BL6NJ_T0013644.1 MGP_C57BL6NJ_G0011689.1 mouse_genomes_project 18 24126448 24126980 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049783.1 MGP_C57BL6NJ_G0024688.1 mouse_genomes_project 18 36302198 36304056 + MGP_C57BL6NJ_P0049783 Eif4ebp3 protein_coding protein_coding MGP_C57BL6NJ_T0049718.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35137973 35156553 + MGP_C57BL6NJ_P0049718 Paip2 protein_coding protein_coding MGP_C57BL6NJ_T0049719.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35137980 35155717 + MGP_C57BL6NJ_P0049719 Paip2 protein_coding protein_coding MGP_C57BL6NJ_T0049720.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35137997 35155886 + MGP_C57BL6NJ_P0049720 Paip2 protein_coding protein_coding MGP_C57BL6NJ_T0049721.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35138005 35156550 + MGP_C57BL6NJ_P0049721 Paip2 protein_coding protein_coding MGP_C57BL6NJ_T0049722.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35138593 35155762 + MGP_C57BL6NJ_P0049722 Paip2 protein_coding protein_coding MGP_C57BL6NJ_T0049723.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35149640 35152792 + Paip2 protein_coding retained_intron MGP_C57BL6NJ_T0049724.1 MGP_C57BL6NJ_G0024669.1 mouse_genomes_project 18 35150341 35153241 + Paip2 protein_coding retained_intron MGP_C57BL6NJ_T0018110.1 MGP_C57BL6NJ_G0015761.1 mouse_genomes_project 18 69396266 69420451 - B430212C06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018111.1 MGP_C57BL6NJ_G0015761.1 mouse_genomes_project 18 69396266 69403036 - B430212C06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018112.1 MGP_C57BL6NJ_G0015761.1 mouse_genomes_project 18 69396446 69419931 - B430212C06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018113.1 MGP_C57BL6NJ_G0015761.1 mouse_genomes_project 18 69398075 69403215 - B430212C06Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018114.1 MGP_C57BL6NJ_G0015761.1 mouse_genomes_project 18 69398088 69403275 - B430212C06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0050275.1 MGP_C57BL6NJ_G0024904.1 mouse_genomes_project 18 64134108 64178785 - MGP_C57BL6NJ_P0050275 Fbxo38 protein_coding protein_coding MGP_C57BL6NJ_T0050578.1 MGP_C57BL6NJ_G0024990.1 mouse_genomes_project 18 80468784 80561417 - MGP_C57BL6NJ_P0050578 8030462N17Rik protein_coding protein_coding MGP_C57BL6NJ_T0101402.1 MGP_C57BL6NJ_G0039448.1 mouse_genomes_project 18 29547036 29547148 + Gm22870 snoRNA snoRNA MGP_C57BL6NJ_T0050702.1 MGP_C57BL6NJ_G0025032.1 mouse_genomes_project 18 94250147 94291161 + MGP_C57BL6NJ_P0050702 Tmx3 protein_coding protein_coding MGP_C57BL6NJ_T0049767.1 MGP_C57BL6NJ_G0024686.1 mouse_genomes_project 18 36151955 36165060 + MGP_C57BL6NJ_P0049767 Slc4a9 protein_coding protein_coding MGP_C57BL6NJ_T0049768.1 MGP_C57BL6NJ_G0024686.1 mouse_genomes_project 18 36151955 36165060 + MGP_C57BL6NJ_P0049768 Slc4a9 protein_coding protein_coding MGP_C57BL6NJ_T0050358.1 MGP_C57BL6NJ_G0024929.1 mouse_genomes_project 18 67998907 68261841 - Ccbe1 protein_coding processed_transcript MGP_C57BL6NJ_T0050359.1 MGP_C57BL6NJ_G0024929.1 mouse_genomes_project 18 68010484 68262183 - MGP_C57BL6NJ_P0050359 Ccbe1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050360.1 MGP_C57BL6NJ_G0024929.1 mouse_genomes_project 18 68014596 68262233 - MGP_C57BL6NJ_P0050360 Ccbe1 protein_coding protein_coding MGP_C57BL6NJ_T0050361.1 MGP_C57BL6NJ_G0024929.1 mouse_genomes_project 18 68239101 68275609 - Ccbe1 protein_coding processed_transcript MGP_C57BL6NJ_T0050276.1 MGP_C57BL6NJ_G0024905.1 mouse_genomes_project 18 64223666 64227518 - MGP_C57BL6NJ_P0050276 Spink7 protein_coding protein_coding MGP_C57BL6NJ_T0050272.1 MGP_C57BL6NJ_G0024901.1 mouse_genomes_project 18 63785544 63787687 - MGP_C57BL6NJ_P0050272 Adrb2 protein_coding protein_coding MGP_C57BL6NJ_T0049374.1 MGP_C57BL6NJ_G0024538.1 mouse_genomes_project 18 3730992 3768813 + MGP_C57BL6NJ_P0049374 4921524L21Rik protein_coding protein_coding MGP_C57BL6NJ_T0011710.1 MGP_C57BL6NJ_G0009795.1 mouse_genomes_project 18 18007403 18007700 + Gm25392 misc_RNA misc_RNA MGP_C57BL6NJ_T0050697.1 MGP_C57BL6NJ_G0025029.1 mouse_genomes_project 18 92618929 92795463 + MGP_C57BL6NJ_P0050697 Rttn protein_coding protein_coding MGP_C57BL6NJ_T0001146.1 MGP_C57BL6NJ_G0001052.1 mouse_genomes_project 18 87645032 87648510 - TEC TEC MGP_C57BL6NJ_T0100135.1 MGP_C57BL6NJ_G0038181.1 mouse_genomes_project 18 66544025 66544087 + Gm23016 snRNA snRNA MGP_C57BL6NJ_T0049493.1 MGP_C57BL6NJ_G0024577.1 mouse_genomes_project 18 12856934 12957350 - MGP_C57BL6NJ_P0049493 Kctd1 protein_coding protein_coding MGP_C57BL6NJ_T0049494.1 MGP_C57BL6NJ_G0024577.1 mouse_genomes_project 18 12856934 13051322 - MGP_C57BL6NJ_P0049494 Kctd1 protein_coding protein_coding MGP_C57BL6NJ_T0049487.1 MGP_C57BL6NJ_G0024574.1 mouse_genomes_project 18 12480496 12544400 - MGP_C57BL6NJ_P0049487 Ss18 protein_coding protein_coding MGP_C57BL6NJ_T0049488.1 MGP_C57BL6NJ_G0024574.1 mouse_genomes_project 18 12482226 12544548 - MGP_C57BL6NJ_P0049488 Ss18 protein_coding protein_coding MGP_C57BL6NJ_T0049489.1 MGP_C57BL6NJ_G0024574.1 mouse_genomes_project 18 12482226 12544548 - MGP_C57BL6NJ_P0049489 Ss18 protein_coding protein_coding MGP_C57BL6NJ_T0050065.1 MGP_C57BL6NJ_G0024821.1 mouse_genomes_project 18 47011888 47025943 + MGP_C57BL6NJ_P0050065 Eif1a protein_coding protein_coding MGP_C57BL6NJ_T0050066.1 MGP_C57BL6NJ_G0024821.1 mouse_genomes_project 18 47011892 47024890 + MGP_C57BL6NJ_P0050066 Eif1a protein_coding protein_coding MGP_C57BL6NJ_T0098847.1 MGP_C57BL6NJ_G0036911.1 mouse_genomes_project 18 80561616 80563255 + pseudogene pseudogene MGP_C57BL6NJ_T0050186.1 MGP_C57BL6NJ_G0024869.1 mouse_genomes_project 18 60571127 60819920 + MGP_C57BL6NJ_P0050186 Chsy3 protein_coding protein_coding MGP_C57BL6NJ_T0049568.1 MGP_C57BL6NJ_G0024609.1 mouse_genomes_project 18 23277063 23302494 - MGP_C57BL6NJ_P0049568 Slc39a6 protein_coding protein_coding MGP_C57BL6NJ_T0049569.1 MGP_C57BL6NJ_G0024609.1 mouse_genomes_project 18 23279478 23302192 - MGP_C57BL6NJ_P0049569 Slc39a6 protein_coding protein_coding MGP_C57BL6NJ_T0049570.1 MGP_C57BL6NJ_G0024609.1 mouse_genomes_project 18 23294993 23298097 - Slc39a6 protein_coding retained_intron MGP_C57BL6NJ_T0049571.1 MGP_C57BL6NJ_G0024609.1 mouse_genomes_project 18 23300161 23301970 - MGP_C57BL6NJ_P0049571 Slc39a6 protein_coding protein_coding MGP_C57BL6NJ_T0049607.1 MGP_C57BL6NJ_G0024627.1 mouse_genomes_project 18 31099401 31102211 - MGP_C57BL6NJ_P0049607 Sft2d3 protein_coding protein_coding MGP_C57BL6NJ_T0011730.1 MGP_C57BL6NJ_G0009815.1 mouse_genomes_project 18 88036652 88036942 - Gm22014 misc_RNA misc_RNA MGP_C57BL6NJ_T0010463.1 MGP_C57BL6NJ_G0008548.1 mouse_genomes_project 18 35092985 35093096 + miRNA miRNA MGP_C57BL6NJ_T0049878.1 MGP_C57BL6NJ_G0024750.1 mouse_genomes_project 18 37417484 37559702 + MGP_C57BL6NJ_P0049878 Pcdhga7 protein_coding protein_coding MGP_C57BL6NJ_T0049879.1 MGP_C57BL6NJ_G0024750.1 mouse_genomes_project 18 37417538 37420582 + MGP_C57BL6NJ_P0049879 Pcdhga7 protein_coding protein_coding MGP_C57BL6NJ_T0049322.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1914486 2125645 + MGP_C57BL6NJ_P0049322 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049323.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1914513 2064181 + Svil protein_coding retained_intron MGP_C57BL6NJ_T0049324.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1914651 2064097 + Svil protein_coding retained_intron MGP_C57BL6NJ_T0049325.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1989571 2052667 + MGP_C57BL6NJ_P0049325 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049326.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1990376 2124964 + MGP_C57BL6NJ_P0049326 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049327.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 1990694 2000271 + Svil protein_coding processed_transcript MGP_C57BL6NJ_T0049328.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2037539 2124786 + MGP_C57BL6NJ_P0049328 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049329.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2046015 2124794 + MGP_C57BL6NJ_P0049329 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049330.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2046017 2124518 + MGP_C57BL6NJ_P0049330 Svil protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049331.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2052364 2125642 + MGP_C57BL6NJ_P0049331 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049332.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2070349 2125645 + MGP_C57BL6NJ_P0049332 Svil protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049333.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2100854 2101990 + Svil protein_coding retained_intron MGP_C57BL6NJ_T0049334.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2110104 2123375 + MGP_C57BL6NJ_P0049334 Svil protein_coding protein_coding MGP_C57BL6NJ_T0049335.1 MGP_C57BL6NJ_G0024532.1 mouse_genomes_project 18 2120606 2125572 + Svil protein_coding retained_intron MGP_C57BL6NJ_T0049465.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432680 10452738 + MGP_C57BL6NJ_P0049465 Cabyr protein_coding protein_coding MGP_C57BL6NJ_T0049466.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432703 10452732 + MGP_C57BL6NJ_P0049466 Cabyr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049467.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432705 10452732 + MGP_C57BL6NJ_P0049467 Cabyr protein_coding protein_coding MGP_C57BL6NJ_T0049468.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432711 10452734 + MGP_C57BL6NJ_P0049468 Cabyr protein_coding protein_coding MGP_C57BL6NJ_T0049469.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432711 10452734 + MGP_C57BL6NJ_P0049469 Cabyr protein_coding protein_coding MGP_C57BL6NJ_T0049470.1 MGP_C57BL6NJ_G0024568.1 mouse_genomes_project 18 10432711 10452734 + MGP_C57BL6NJ_P0049470 Cabyr protein_coding protein_coding MGP_C57BL6NJ_T0013672.1 MGP_C57BL6NJ_G0011717.1 mouse_genomes_project 18 56933910 56934888 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049552.1 MGP_C57BL6NJ_G0024602.1 mouse_genomes_project 18 22621168 22630075 - MGP_C57BL6NJ_P0049552 Zscan30 protein_coding protein_coding MGP_C57BL6NJ_T0049748.1 MGP_C57BL6NJ_G0024679.1 mouse_genomes_project 18 35392358 35430235 + MGP_C57BL6NJ_P0049748 Cxxc5 protein_coding protein_coding MGP_C57BL6NJ_T0013639.1 MGP_C57BL6NJ_G0011684.1 mouse_genomes_project 18 12418737 12419552 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050461.1 MGP_C57BL6NJ_G0024954.1 mouse_genomes_project 18 72521715 72525871 - MGP_C57BL6NJ_P0050461 Dynap protein_coding protein_coding MGP_C57BL6NJ_T0050663.1 MGP_C57BL6NJ_G0025017.1 mouse_genomes_project 18 87342881 87353293 + MGP_C57BL6NJ_P0050663 Zadh2 protein_coding protein_coding MGP_C57BL6NJ_T0050687.1 MGP_C57BL6NJ_G0025025.1 mouse_genomes_project 18 89819201 89933384 + MGP_C57BL6NJ_P0050687 Neto1 protein_coding protein_coding MGP_C57BL6NJ_T0049860.1 MGP_C57BL6NJ_G0024737.1 mouse_genomes_project 18 37199881 37204180 + MGP_C57BL6NJ_P0049860 Pcdhb20 protein_coding protein_coding MGP_C57BL6NJ_T0049462.1 MGP_C57BL6NJ_G0024567.1 mouse_genomes_project 18 10322597 10373364 + Ttc39c protein_coding retained_intron MGP_C57BL6NJ_T0049463.1 MGP_C57BL6NJ_G0024567.1 mouse_genomes_project 18 10323139 10428120 + MGP_C57BL6NJ_P0049463 Ttc39c protein_coding protein_coding MGP_C57BL6NJ_T0049464.1 MGP_C57BL6NJ_G0024567.1 mouse_genomes_project 18 10426061 10428187 + Ttc39c protein_coding retained_intron MGP_C57BL6NJ_T0007184.1 MGP_C57BL6NJ_G0005906.1 mouse_genomes_project 18 31591093 31617349 - A830052D11Rik lincRNA lincRNA MGP_C57BL6NJ_T0049799.1 MGP_C57BL6NJ_G0024694.1 mouse_genomes_project 18 36390520 36393169 - MGP_C57BL6NJ_P0049799 Ndufa2 protein_coding protein_coding MGP_C57BL6NJ_T0010482.1 MGP_C57BL6NJ_G0008567.1 mouse_genomes_project 18 62629169 62629233 + Mir6983 miRNA miRNA MGP_C57BL6NJ_T0049883.1 MGP_C57BL6NJ_G0024753.1 mouse_genomes_project 18 37433668 37559702 + MGP_C57BL6NJ_P0049883 Pcdhgb5 protein_coding protein_coding MGP_C57BL6NJ_T0049884.1 MGP_C57BL6NJ_G0024753.1 mouse_genomes_project 18 37433713 37439447 + Pcdhgb5 protein_coding retained_intron MGP_C57BL6NJ_T0101423.1 MGP_C57BL6NJ_G0039469.1 mouse_genomes_project 18 77656240 77656305 + Gm26202 snoRNA snoRNA MGP_C57BL6NJ_T0049511.1 MGP_C57BL6NJ_G0024587.1 mouse_genomes_project 18 18999977 19048627 + MGP_C57BL6NJ_P0049511 Dsg2 protein_coding protein_coding MGP_C57BL6NJ_T0049512.1 MGP_C57BL6NJ_G0024587.1 mouse_genomes_project 18 19000058 19028289 + MGP_C57BL6NJ_P0049512 Dsg2 protein_coding protein_coding MGP_C57BL6NJ_T0049513.1 MGP_C57BL6NJ_G0024587.1 mouse_genomes_project 18 19000149 19025652 + MGP_C57BL6NJ_P0049513 Dsg2 protein_coding protein_coding MGP_C57BL6NJ_T0050374.1 MGP_C57BL6NJ_G0024941.1 mouse_genomes_project 18 69728346 69740903 + MGP_C57BL6NJ_P0050374 Psmg2 protein_coding protein_coding MGP_C57BL6NJ_T0018087.1 MGP_C57BL6NJ_G0015754.1 mouse_genomes_project 18 37538546 37558029 + Gm38182 processed_transcript processed_transcript MGP_C57BL6NJ_T0018088.1 MGP_C57BL6NJ_G0015754.1 mouse_genomes_project 18 37538815 37557887 + Gm38182 processed_transcript processed_transcript MGP_C57BL6NJ_T0018089.1 MGP_C57BL6NJ_G0015754.1 mouse_genomes_project 18 37539026 37558208 + Gm38182 processed_transcript processed_transcript MGP_C57BL6NJ_T0018090.1 MGP_C57BL6NJ_G0015754.1 mouse_genomes_project 18 37539111 37558211 + Gm38182 processed_transcript processed_transcript MGP_C57BL6NJ_T0018091.1 MGP_C57BL6NJ_G0015754.1 mouse_genomes_project 18 37539404 37558209 + Gm38182 processed_transcript processed_transcript MGP_C57BL6NJ_T0050034.1 MGP_C57BL6NJ_G0024809.1 mouse_genomes_project 18 44505441 44513015 + MGP_C57BL6NJ_P0050034 Npy6r protein_coding protein_coding MGP_C57BL6NJ_T0050368.1 MGP_C57BL6NJ_G0024935.1 mouse_genomes_project 18 69419911 69444732 + MGP_C57BL6NJ_P0050368 Cidea protein_coding protein_coding MGP_C57BL6NJ_T0050240.1 MGP_C57BL6NJ_G0024888.1 mouse_genomes_project 18 62617313 62644142 + MGP_C57BL6NJ_P0050240 Csf1r protein_coding protein_coding MGP_C57BL6NJ_T0050241.1 MGP_C57BL6NJ_G0024888.1 mouse_genomes_project 18 62617557 62645157 + MGP_C57BL6NJ_P0050241 Csf1r protein_coding protein_coding MGP_C57BL6NJ_T0013662.1 MGP_C57BL6NJ_G0011707.1 mouse_genomes_project 18 42333412 42333821 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049597.1 MGP_C57BL6NJ_G0024619.1 mouse_genomes_project 18 30584673 30595198 - MGP_C57BL6NJ_P0049597 Syt4 protein_coding protein_coding MGP_C57BL6NJ_T0007209.1 MGP_C57BL6NJ_G0005924.1 mouse_genomes_project 18 64402131 64406271 - 2700046A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007210.1 MGP_C57BL6NJ_G0005924.1 mouse_genomes_project 18 64404745 64406303 - 2700046A07Rik lincRNA lincRNA MGP_C57BL6NJ_T0013631.1 MGP_C57BL6NJ_G0011676.1 mouse_genomes_project 18 4766544 4766952 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050463.1 MGP_C57BL6NJ_G0024956.1 mouse_genomes_project 18 72775251 72803696 + MGP_C57BL6NJ_P0050463 Stard6 protein_coding protein_coding MGP_C57BL6NJ_T0050464.1 MGP_C57BL6NJ_G0024956.1 mouse_genomes_project 18 72775775 72786193 + MGP_C57BL6NJ_P0050464 Stard6 protein_coding protein_coding MGP_C57BL6NJ_T0050465.1 MGP_C57BL6NJ_G0024956.1 mouse_genomes_project 18 72775958 72801622 + MGP_C57BL6NJ_P0050465 Stard6 protein_coding protein_coding MGP_C57BL6NJ_T0101395.1 MGP_C57BL6NJ_G0039441.1 mouse_genomes_project 18 7935266 7935384 - Gm24894 snoRNA snoRNA MGP_C57BL6NJ_T0050235.1 MGP_C57BL6NJ_G0024885.1 mouse_genomes_project 18 62504420 62523230 - MGP_C57BL6NJ_P0050235 Slc6a7 protein_coding protein_coding MGP_C57BL6NJ_T0099060.1 MGP_C57BL6NJ_G0037124.1 mouse_genomes_project 18 77682539 77682631 + Gm27781 rRNA rRNA MGP_C57BL6NJ_T0049576.1 MGP_C57BL6NJ_G0024614.1 mouse_genomes_project 18 23854502 23899659 - MGP_C57BL6NJ_P0049576 Tpgs2 protein_coding protein_coding MGP_C57BL6NJ_T0049577.1 MGP_C57BL6NJ_G0024614.1 mouse_genomes_project 18 23864412 23899972 - MGP_C57BL6NJ_P0049577 Tpgs2 protein_coding protein_coding MGP_C57BL6NJ_T0018083.1 MGP_C57BL6NJ_G0015753.1 mouse_genomes_project 18 37450383 37461300 - Gm26672 processed_transcript antisense MGP_C57BL6NJ_T0018084.1 MGP_C57BL6NJ_G0015753.1 mouse_genomes_project 18 37457473 37475072 - Gm26672 processed_transcript antisense MGP_C57BL6NJ_T0018085.1 MGP_C57BL6NJ_G0015753.1 mouse_genomes_project 18 37457615 37475773 - Gm26672 processed_transcript antisense MGP_C57BL6NJ_T0018086.1 MGP_C57BL6NJ_G0015753.1 mouse_genomes_project 18 37460163 37461694 - Gm26672 processed_transcript retained_intron MGP_C57BL6NJ_T0099252.1 MGP_C57BL6NJ_G0037316.1 mouse_genomes_project 18 77395814 77395893 - Scarna17 scaRNA scaRNA MGP_C57BL6NJ_T0013629.1 MGP_C57BL6NJ_G0011674.1 mouse_genomes_project 18 2650963 2651336 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050486.1 MGP_C57BL6NJ_G0024962.1 mouse_genomes_project 18 76279981 76299418 - MGP_C57BL6NJ_P0050486 Elac1 protein_coding protein_coding MGP_C57BL6NJ_T0050595.1 MGP_C57BL6NJ_G0024999.1 mouse_genomes_project 18 83030729 83108691 + MGP_C57BL6NJ_P0050595 Pard6g protein_coding protein_coding MGP_C57BL6NJ_T0102206.1 MGP_C57BL6NJ_G0040215.1 mouse_genomes_project 18 37346500 37346975 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102207.1 MGP_C57BL6NJ_G0040215.1 mouse_genomes_project 18 37346820 37348240 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0101406.1 MGP_C57BL6NJ_G0039452.1 mouse_genomes_project 18 33511445 33511571 + Gm24432 snoRNA snoRNA MGP_C57BL6NJ_T0050134.1 MGP_C57BL6NJ_G0024848.1 mouse_genomes_project 18 54402525 54515447 + MGP_C57BL6NJ_P0050134 Prdm6 protein_coding protein_coding MGP_C57BL6NJ_T0050135.1 MGP_C57BL6NJ_G0024848.1 mouse_genomes_project 18 54403030 54515447 + MGP_C57BL6NJ_P0050135 Prdm6 protein_coding protein_coding MGP_C57BL6NJ_T0050136.1 MGP_C57BL6NJ_G0024848.1 mouse_genomes_project 18 54412246 54514659 + MGP_C57BL6NJ_P0050136 Prdm6 protein_coding protein_coding MGP_C57BL6NJ_T0049398.1 MGP_C57BL6NJ_G0024544.1 mouse_genomes_project 18 6510878 6514224 + MGP_C57BL6NJ_P0049398 Fzd8 protein_coding protein_coding MGP_C57BL6NJ_T0007202.1 MGP_C57BL6NJ_G0005920.1 mouse_genomes_project 18 56007333 56100199 + Gm4221 lincRNA lincRNA MGP_C57BL6NJ_T0007203.1 MGP_C57BL6NJ_G0005920.1 mouse_genomes_project 18 56076813 56102276 + Gm4221 lincRNA lincRNA MGP_C57BL6NJ_T0049268.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125068 202419 - MGP_C57BL6NJ_P0049268 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049269.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125374 221482 - MGP_C57BL6NJ_P0049269 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049270.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125376 168916 - MGP_C57BL6NJ_P0049270 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049271.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125376 221392 - MGP_C57BL6NJ_P0049271 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049272.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125376 221392 - MGP_C57BL6NJ_P0049272 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049273.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125376 221392 - MGP_C57BL6NJ_P0049273 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049274.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125376 221291 - MGP_C57BL6NJ_P0049274 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049275.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125977 149074 - MGP_C57BL6NJ_P0049275 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049276.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 125983 221316 - Crem protein_coding processed_transcript MGP_C57BL6NJ_T0049277.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126281 221551 - MGP_C57BL6NJ_P0049277 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049278.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126284 168913 - MGP_C57BL6NJ_P0049278 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049279.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126410 149052 - MGP_C57BL6NJ_P0049279 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049280.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126443 202335 - MGP_C57BL6NJ_P0049280 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049281.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126534 200302 - MGP_C57BL6NJ_P0049281 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049282.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126554 148437 - MGP_C57BL6NJ_P0049282 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049283.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126566 148383 - MGP_C57BL6NJ_P0049283 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049284.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126578 200306 - MGP_C57BL6NJ_P0049284 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049285.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126592 149074 - MGP_C57BL6NJ_P0049285 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049286.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126595 200302 - MGP_C57BL6NJ_P0049286 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049287.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126605 202335 - MGP_C57BL6NJ_P0049287 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049288.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126605 202335 - MGP_C57BL6NJ_P0049288 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049289.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126605 202335 - MGP_C57BL6NJ_P0049289 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049290.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126605 221336 - MGP_C57BL6NJ_P0049290 Crem protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049291.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126605 202335 - MGP_C57BL6NJ_P0049291 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049292.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126608 184553 - MGP_C57BL6NJ_P0049292 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049293.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126608 184418 - MGP_C57BL6NJ_P0049293 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049294.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126608 184418 - MGP_C57BL6NJ_P0049294 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049295.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126608 200302 - MGP_C57BL6NJ_P0049295 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049296.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126653 148406 - MGP_C57BL6NJ_P0049296 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049297.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126859 200302 - MGP_C57BL6NJ_P0049297 Crem protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049298.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 126865 149043 - MGP_C57BL6NJ_P0049298 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049299.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 127005 184595 - MGP_C57BL6NJ_P0049299 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049300.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 127005 168809 - MGP_C57BL6NJ_P0049300 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049301.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 151202 168898 - Crem protein_coding processed_transcript MGP_C57BL6NJ_T0049302.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 154936 168913 - Crem protein_coding retained_intron MGP_C57BL6NJ_T0049303.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 155359 168911 - Crem protein_coding processed_transcript MGP_C57BL6NJ_T0049304.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 161464 221392 - MGP_C57BL6NJ_P0049304 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049305.1 MGP_C57BL6NJ_G0024525.1 mouse_genomes_project 18 161767 221377 - MGP_C57BL6NJ_P0049305 Crem protein_coding protein_coding MGP_C57BL6NJ_T0049680.1 MGP_C57BL6NJ_G0024656.1 mouse_genomes_project 18 34237740 34256039 - MGP_C57BL6NJ_P0049680 Cdc25c protein_coding protein_coding MGP_C57BL6NJ_T0050312.1 MGP_C57BL6NJ_G0024916.1 mouse_genomes_project 18 66242502 66275218 - MGP_C57BL6NJ_P0050312 Fech protein_coding protein_coding MGP_C57BL6NJ_T0049856.1 MGP_C57BL6NJ_G0024733.1 mouse_genomes_project 18 37172965 37178388 + MGP_C57BL6NJ_P0049856 Pcdhb16 protein_coding protein_coding MGP_C57BL6NJ_T0100133.1 MGP_C57BL6NJ_G0038179.1 mouse_genomes_project 18 65316131 65316238 + Gm24848 snRNA snRNA MGP_C57BL6NJ_T0050372.1 MGP_C57BL6NJ_G0024939.1 mouse_genomes_project 18 69567180 69696508 - MGP_C57BL6NJ_P0050372 Spire1 protein_coding protein_coding MGP_C57BL6NJ_T0050395.1 MGP_C57BL6NJ_G0024950.1 mouse_genomes_project 18 71141383 71146892 - MGP_C57BL6NJ_P0050395 4930546C10Rik protein_coding protein_coding MGP_C57BL6NJ_T0049889.1 MGP_C57BL6NJ_G0024757.1 mouse_genomes_project 18 37456945 37559702 + MGP_C57BL6NJ_P0049889 Pcdhgb7 protein_coding protein_coding MGP_C57BL6NJ_T0050564.1 MGP_C57BL6NJ_G0024986.1 mouse_genomes_project 18 79977873 79979125 - MGP_C57BL6NJ_P0050564 Gm7276 protein_coding protein_coding MGP_C57BL6NJ_T0049819.1 MGP_C57BL6NJ_G0024703.1 mouse_genomes_project 18 36604548 36867648 + MGP_C57BL6NJ_P0049819 Pcdha3 protein_coding protein_coding MGP_C57BL6NJ_T0050111.1 MGP_C57BL6NJ_G0024834.1 mouse_genomes_project 18 50948915 50953566 + MGP_C57BL6NJ_P0050111 Fam170a protein_coding protein_coding MGP_C57BL6NJ_T0007174.1 MGP_C57BL6NJ_G0005899.1 mouse_genomes_project 18 9437429 9455891 - Gm6277 lincRNA lincRNA MGP_C57BL6NJ_T0098848.1 MGP_C57BL6NJ_G0036912.1 mouse_genomes_project 18 92962988 92966716 - pseudogene pseudogene MGP_C57BL6NJ_T0010468.1 MGP_C57BL6NJ_G0008553.1 mouse_genomes_project 18 37714360 37714419 - Mir6980 miRNA miRNA MGP_C57BL6NJ_T0050264.1 MGP_C57BL6NJ_G0024896.1 mouse_genomes_project 18 63270392 63281664 - MGP_C57BL6NJ_P0050264 Pcyox1l protein_coding protein_coding MGP_C57BL6NJ_T0050265.1 MGP_C57BL6NJ_G0024896.1 mouse_genomes_project 18 63273030 63281642 - MGP_C57BL6NJ_P0050265 Pcyox1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050266.1 MGP_C57BL6NJ_G0024896.1 mouse_genomes_project 18 63276895 63281664 - Pcyox1l protein_coding retained_intron MGP_C57BL6NJ_T0011720.1 MGP_C57BL6NJ_G0009805.1 mouse_genomes_project 18 42688159 42688315 + Gm27457 misc_RNA misc_RNA MGP_C57BL6NJ_T0011727.1 MGP_C57BL6NJ_G0009812.1 mouse_genomes_project 18 72034032 72034142 - Gm22508 misc_RNA misc_RNA MGP_C57BL6NJ_T0049846.1 MGP_C57BL6NJ_G0024724.1 mouse_genomes_project 18 37036298 37039920 + MGP_C57BL6NJ_P0049846 Pcdhb7 protein_coding protein_coding MGP_C57BL6NJ_T0050587.1 MGP_C57BL6NJ_G0024995.1 mouse_genomes_project 18 80894088 80907842 - MGP_C57BL6NJ_P0050587 Siglec15 protein_coding protein_coding MGP_C57BL6NJ_T0049653.1 MGP_C57BL6NJ_G0024648.1 mouse_genomes_project 18 33887573 33963252 - MGP_C57BL6NJ_P0049653 Fam13b protein_coding protein_coding MGP_C57BL6NJ_T0049698.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089257 35108137 + MGP_C57BL6NJ_P0049698 Gm28285 protein_coding protein_coding MGP_C57BL6NJ_T0049699.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089261 35114792 + MGP_C57BL6NJ_P0049699 Gm28285 protein_coding protein_coding MGP_C57BL6NJ_T0049700.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089265 35095332 + Gm28285 protein_coding processed_transcript MGP_C57BL6NJ_T0049701.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089265 35107832 + Gm28285 protein_coding processed_transcript MGP_C57BL6NJ_T0049702.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089266 35108060 + MGP_C57BL6NJ_P0049702 Gm28285 protein_coding protein_coding MGP_C57BL6NJ_T0049703.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089275 35117462 + MGP_C57BL6NJ_P0049703 Gm28285 protein_coding protein_coding MGP_C57BL6NJ_T0049704.1 MGP_C57BL6NJ_G0024667.1 mouse_genomes_project 18 35089291 35107802 + Gm28285 protein_coding processed_transcript MGP_C57BL6NJ_T0098846.1 MGP_C57BL6NJ_G0036910.1 mouse_genomes_project 18 61907527 61908758 + pseudogene pseudogene MGP_C57BL6NJ_T0010483.1 MGP_C57BL6NJ_G0008568.1 mouse_genomes_project 18 62944113 62944226 + Gm25301 miRNA miRNA MGP_C57BL6NJ_T0050237.1 MGP_C57BL6NJ_G0024887.1 mouse_genomes_project 18 62553966 62595039 + MGP_C57BL6NJ_P0050237 Pdgfrb protein_coding protein_coding MGP_C57BL6NJ_T0050238.1 MGP_C57BL6NJ_G0024887.1 mouse_genomes_project 18 62554016 62595034 + MGP_C57BL6NJ_P0050238 Pdgfrb protein_coding protein_coding MGP_C57BL6NJ_T0050239.1 MGP_C57BL6NJ_G0024887.1 mouse_genomes_project 18 62554313 62595042 + MGP_C57BL6NJ_P0050239 Pdgfrb protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050213.1 MGP_C57BL6NJ_G0024879.1 mouse_genomes_project 18 62166724 62194032 - MGP_C57BL6NJ_P0050213 Ndst1 protein_coding protein_coding MGP_C57BL6NJ_T0099054.1 MGP_C57BL6NJ_G0037118.1 mouse_genomes_project 18 38114134 38114231 + Gm24690 rRNA rRNA MGP_C57BL6NJ_T0099058.1 MGP_C57BL6NJ_G0037122.1 mouse_genomes_project 18 71798960 71799069 + Gm24845 rRNA rRNA MGP_C57BL6NJ_T0102208.1 MGP_C57BL6NJ_G0040216.1 mouse_genomes_project 18 50800836 50801711 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102209.1 MGP_C57BL6NJ_G0040216.1 mouse_genomes_project 18 50800905 50801622 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0010495.1 MGP_C57BL6NJ_G0008580.1 mouse_genomes_project 18 83942211 83942281 - Gm25071 miRNA miRNA MGP_C57BL6NJ_T0018108.1 MGP_C57BL6NJ_G0015760.1 mouse_genomes_project 18 68261668 68293250 + Gm15958 processed_transcript processed_transcript MGP_C57BL6NJ_T0018109.1 MGP_C57BL6NJ_G0015760.1 mouse_genomes_project 18 68262281 68285930 + Gm15958 processed_transcript processed_transcript MGP_C57BL6NJ_T0007192.1 MGP_C57BL6NJ_G0005912.1 mouse_genomes_project 18 37315130 37315979 + 4930517L18Rik lincRNA lincRNA MGP_C57BL6NJ_T0013682.1 MGP_C57BL6NJ_G0011727.1 mouse_genomes_project 18 93225243 93225568 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013641.1 MGP_C57BL6NJ_G0011686.1 mouse_genomes_project 18 14879221 14879862 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049528.1 MGP_C57BL6NJ_G0024597.1 mouse_genomes_project 18 20936069 21125867 + MGP_C57BL6NJ_P0049528 Asxl3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049529.1 MGP_C57BL6NJ_G0024597.1 mouse_genomes_project 18 20936602 20971796 + Asxl3 protein_coding retained_intron MGP_C57BL6NJ_T0049530.1 MGP_C57BL6NJ_G0024597.1 mouse_genomes_project 18 20936808 21126074 + MGP_C57BL6NJ_P0049530 Asxl3 protein_coding protein_coding MGP_C57BL6NJ_T0049531.1 MGP_C57BL6NJ_G0024597.1 mouse_genomes_project 18 20936808 21125862 + MGP_C57BL6NJ_P0049531 Asxl3 protein_coding protein_coding MGP_C57BL6NJ_T0050116.1 MGP_C57BL6NJ_G0024839.1 mouse_genomes_project 18 53313920 53340133 + MGP_C57BL6NJ_P0050116 Srfbp1 protein_coding protein_coding MGP_C57BL6NJ_T0010462.1 MGP_C57BL6NJ_G0008547.1 mouse_genomes_project 18 35090420 35090490 + Mir1949 miRNA miRNA MGP_C57BL6NJ_T0013653.1 MGP_C57BL6NJ_G0011698.1 mouse_genomes_project 18 36240960 36241732 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050166.1 MGP_C57BL6NJ_G0024859.1 mouse_genomes_project 18 58334437 58517535 + MGP_C57BL6NJ_P0050166 Megf10 protein_coding protein_coding MGP_C57BL6NJ_T0050167.1 MGP_C57BL6NJ_G0024859.1 mouse_genomes_project 18 58347166 58512796 + MGP_C57BL6NJ_P0050167 Megf10 protein_coding protein_coding MGP_C57BL6NJ_T0050561.1 MGP_C57BL6NJ_G0024985.1 mouse_genomes_project 18 79848522 79942970 + MGP_C57BL6NJ_P0050561 Pias2 protein_coding protein_coding MGP_C57BL6NJ_T0050562.1 MGP_C57BL6NJ_G0024985.1 mouse_genomes_project 18 79850340 79934201 + MGP_C57BL6NJ_P0050562 Pias2 protein_coding protein_coding MGP_C57BL6NJ_T0050563.1 MGP_C57BL6NJ_G0024985.1 mouse_genomes_project 18 79850340 79942970 + MGP_C57BL6NJ_P0050563 Pias2 protein_coding protein_coding MGP_C57BL6NJ_T0050192.1 MGP_C57BL6NJ_G0024874.1 mouse_genomes_project 18 61942916 61973261 - MGP_C57BL6NJ_P0050192 Smim3 protein_coding protein_coding MGP_C57BL6NJ_T0049855.1 MGP_C57BL6NJ_G0024732.1 mouse_genomes_project 18 37168577 37171492 + MGP_C57BL6NJ_P0049855 Pcdhb15 protein_coding protein_coding MGP_C57BL6NJ_T0013667.1 MGP_C57BL6NJ_G0011712.1 mouse_genomes_project 18 53322235 53323127 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013669.1 MGP_C57BL6NJ_G0011714.1 mouse_genomes_project 18 53850361 53850920 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050044.1 MGP_C57BL6NJ_G0024813.1 mouse_genomes_project 18 45086256 45159493 + MGP_C57BL6NJ_P0050044 Ythdc2 protein_coding protein_coding MGP_C57BL6NJ_T0050045.1 MGP_C57BL6NJ_G0024813.1 mouse_genomes_project 18 45107747 45109074 + Ythdc2 protein_coding retained_intron MGP_C57BL6NJ_T0050046.1 MGP_C57BL6NJ_G0024813.1 mouse_genomes_project 18 45115698 45159500 + MGP_C57BL6NJ_P0050046 Ythdc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050047.1 MGP_C57BL6NJ_G0024813.1 mouse_genomes_project 18 45115888 45116422 + Ythdc2 protein_coding retained_intron MGP_C57BL6NJ_T0050037.1 MGP_C57BL6NJ_G0024811.1 mouse_genomes_project 18 44613483 44630129 + MGP_C57BL6NJ_P0050037 Dcp2 protein_coding protein_coding MGP_C57BL6NJ_T0050038.1 MGP_C57BL6NJ_G0024811.1 mouse_genomes_project 18 44613508 44660510 + MGP_C57BL6NJ_P0050038 Dcp2 protein_coding protein_coding MGP_C57BL6NJ_T0010457.1 MGP_C57BL6NJ_G0008542.1 mouse_genomes_project 18 9456914 9456992 - Mir1901 miRNA miRNA MGP_C57BL6NJ_T0007195.1 MGP_C57BL6NJ_G0005914.1 mouse_genomes_project 18 37981024 37993269 - 1700086O06Rik lincRNA lincRNA MGP_C57BL6NJ_T0007196.1 MGP_C57BL6NJ_G0005914.1 mouse_genomes_project 18 37981024 37993636 - 1700086O06Rik lincRNA lincRNA MGP_C57BL6NJ_T0050630.1 MGP_C57BL6NJ_G0025009.1 mouse_genomes_project 18 83618070 83721627 - MGP_C57BL6NJ_P0050630 Nfatc1 protein_coding protein_coding MGP_C57BL6NJ_T0050631.1 MGP_C57BL6NJ_G0025009.1 mouse_genomes_project 18 83619841 83726220 - MGP_C57BL6NJ_P0050631 Nfatc1 protein_coding protein_coding MGP_C57BL6NJ_T0050632.1 MGP_C57BL6NJ_G0025009.1 mouse_genomes_project 18 83659291 83721627 - MGP_C57BL6NJ_P0050632 Nfatc1 protein_coding protein_coding MGP_C57BL6NJ_T0049424.1 MGP_C57BL6NJ_G0024555.1 mouse_genomes_project 18 8007546 8020548 + MGP_C57BL6NJ_P0049424 Snrpd1 protein_coding protein_coding MGP_C57BL6NJ_T0050637.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85561902 85659995 + MGP_C57BL6NJ_P0050637 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050638.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85561904 85608777 + MGP_C57BL6NJ_P0050638 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050639.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85561918 85688547 + MGP_C57BL6NJ_P0050639 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050640.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85562126 85687127 + MGP_C57BL6NJ_P0050640 Mbp protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050641.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655754 85688547 + MGP_C57BL6NJ_P0050641 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050642.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655754 85688547 + MGP_C57BL6NJ_P0050642 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050643.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655754 85688547 + MGP_C57BL6NJ_P0050643 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050644.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655754 85688547 + MGP_C57BL6NJ_P0050644 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050645.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655761 85688537 + MGP_C57BL6NJ_P0050645 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050646.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655799 85688547 + MGP_C57BL6NJ_P0050646 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050647.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655800 85688541 + MGP_C57BL6NJ_P0050647 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050648.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655807 85688537 + MGP_C57BL6NJ_P0050648 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050649.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655821 85687066 + MGP_C57BL6NJ_P0050649 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050650.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655837 85688547 + MGP_C57BL6NJ_P0050650 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050651.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85655874 85688536 + MGP_C57BL6NJ_P0050651 Mbp protein_coding protein_coding MGP_C57BL6NJ_T0050652.1 MGP_C57BL6NJ_G0025013.1 mouse_genomes_project 18 85666171 85687197 + Mbp protein_coding processed_transcript MGP_C57BL6NJ_T0049413.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7691729 7882282 + Greb1l protein_coding retained_intron MGP_C57BL6NJ_T0049414.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7691731 7948482 + MGP_C57BL6NJ_P0049414 Greb1l protein_coding protein_coding MGP_C57BL6NJ_T0049415.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7834462 7921609 + MGP_C57BL6NJ_P0049415 Greb1l protein_coding protein_coding MGP_C57BL6NJ_T0049416.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7890619 7896725 + Greb1l protein_coding retained_intron MGP_C57BL6NJ_T0049417.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7891927 7937682 + MGP_C57BL6NJ_P0049417 Greb1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049418.1 MGP_C57BL6NJ_G0024553.1 mouse_genomes_project 18 7937763 7942687 + Greb1l protein_coding processed_transcript MGP_C57BL6NJ_T0050094.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50635538 50754366 + MGP_C57BL6NJ_P0050094 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050095.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50635602 50709389 + Tnfaip8 protein_coding processed_transcript MGP_C57BL6NJ_T0050096.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50635640 50756594 + MGP_C57BL6NJ_P0050096 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050097.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50635646 50769806 + Tnfaip8 protein_coding processed_transcript MGP_C57BL6NJ_T0050098.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50676817 50754159 + MGP_C57BL6NJ_P0050098 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050099.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50688265 50754216 + MGP_C57BL6NJ_P0050099 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050100.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50688275 50704512 + Tnfaip8 protein_coding processed_transcript MGP_C57BL6NJ_T0050101.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50688276 50754051 + MGP_C57BL6NJ_P0050101 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050102.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50704824 50705221 + MGP_C57BL6NJ_P0050102 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050103.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50709778 50711484 + Tnfaip8 protein_coding retained_intron MGP_C57BL6NJ_T0050104.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50709786 50753722 + MGP_C57BL6NJ_P0050104 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050105.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50709789 50753835 + MGP_C57BL6NJ_P0050105 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0050106.1 MGP_C57BL6NJ_G0024832.1 mouse_genomes_project 18 50711350 50755147 + MGP_C57BL6NJ_P0050106 Tnfaip8 protein_coding protein_coding MGP_C57BL6NJ_T0010464.1 MGP_C57BL6NJ_G0008549.1 mouse_genomes_project 18 35541557 35541641 + Gm23882 miRNA miRNA MGP_C57BL6NJ_T0013665.1 MGP_C57BL6NJ_G0011710.1 mouse_genomes_project 18 49190398 49191405 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049523.1 MGP_C57BL6NJ_G0024594.1 mouse_genomes_project 18 19647089 19816301 - MGP_C57BL6NJ_P0049523 Garem protein_coding protein_coding MGP_C57BL6NJ_T0049691.1 MGP_C57BL6NJ_G0024663.1 mouse_genomes_project 18 34444839 34461824 - MGP_C57BL6NJ_P0049691 Hspa9 protein_coding protein_coding MGP_C57BL6NJ_T0049692.1 MGP_C57BL6NJ_G0024663.1 mouse_genomes_project 18 34445692 34446736 - Hspa9 protein_coding retained_intron MGP_C57BL6NJ_T0049693.1 MGP_C57BL6NJ_G0024663.1 mouse_genomes_project 18 34446121 34448329 - Hspa9 protein_coding retained_intron MGP_C57BL6NJ_T0049694.1 MGP_C57BL6NJ_G0024663.1 mouse_genomes_project 18 34455638 34459040 - Hspa9 protein_coding retained_intron MGP_C57BL6NJ_T0050567.1 MGP_C57BL6NJ_G0024988.1 mouse_genomes_project 18 80084245 80261928 + MGP_C57BL6NJ_P0050567 Loxhd1 protein_coding protein_coding MGP_C57BL6NJ_T0050568.1 MGP_C57BL6NJ_G0024988.1 mouse_genomes_project 18 80111479 80195600 + MGP_C57BL6NJ_P0050568 Loxhd1 protein_coding protein_coding MGP_C57BL6NJ_T0050569.1 MGP_C57BL6NJ_G0024988.1 mouse_genomes_project 18 80140739 80229744 + MGP_C57BL6NJ_P0050569 Loxhd1 protein_coding protein_coding MGP_C57BL6NJ_T0050570.1 MGP_C57BL6NJ_G0024988.1 mouse_genomes_project 18 80188394 80262012 + MGP_C57BL6NJ_P0050570 Loxhd1 protein_coding protein_coding MGP_C57BL6NJ_T0050571.1 MGP_C57BL6NJ_G0024988.1 mouse_genomes_project 18 80227780 80261557 + MGP_C57BL6NJ_P0050571 Loxhd1 protein_coding protein_coding MGP_C57BL6NJ_T0050370.1 MGP_C57BL6NJ_G0024937.1 mouse_genomes_project 18 69481290 69526468 - MGP_C57BL6NJ_P0050370 Afg3l2 protein_coding protein_coding MGP_C57BL6NJ_T0049882.1 MGP_C57BL6NJ_G0024752.1 mouse_genomes_project 18 37428365 37559702 + MGP_C57BL6NJ_P0049882 Pcdhga8 protein_coding protein_coding MGP_C57BL6NJ_T0050268.1 MGP_C57BL6NJ_G0024898.1 mouse_genomes_project 18 63304257 63367538 - MGP_C57BL6NJ_P0050268 Afap1l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007219.1 MGP_C57BL6NJ_G0005933.1 mouse_genomes_project 18 85906304 85910841 - 2210420H20Rik lincRNA lincRNA MGP_C57BL6NJ_T0049405.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7338393 7377626 - MGP_C57BL6NJ_P0049405 Usp14 protein_coding protein_coding MGP_C57BL6NJ_T0049406.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7338555 7377568 - MGP_C57BL6NJ_P0049406 Usp14 protein_coding protein_coding MGP_C57BL6NJ_T0049407.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7339861 7344031 - Usp14 protein_coding retained_intron MGP_C57BL6NJ_T0049408.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7345282 7354020 - Usp14 protein_coding retained_intron MGP_C57BL6NJ_T0049409.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7354956 7377582 - Usp14 protein_coding retained_intron MGP_C57BL6NJ_T0049410.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7357604 7362494 - Usp14 protein_coding retained_intron MGP_C57BL6NJ_T0049411.1 MGP_C57BL6NJ_G0024551.1 mouse_genomes_project 18 7371211 7377523 - Usp14 protein_coding retained_intron MGP_C57BL6NJ_T0049459.1 MGP_C57BL6NJ_G0024566.1 mouse_genomes_project 18 9991784 10262102 + MGP_C57BL6NJ_P0049459 Lama3 protein_coding protein_coding MGP_C57BL6NJ_T0049460.1 MGP_C57BL6NJ_G0024566.1 mouse_genomes_project 18 9991989 10261752 + MGP_C57BL6NJ_P0049460 Lama3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049461.1 MGP_C57BL6NJ_G0024566.1 mouse_genomes_project 18 10170032 10262102 + MGP_C57BL6NJ_P0049461 Lama3 protein_coding protein_coding MGP_C57BL6NJ_T0010451.1 MGP_C57BL6NJ_G0008536.1 mouse_genomes_project 18 5954225 5954329 - Gm26119 miRNA miRNA MGP_C57BL6NJ_T0100136.1 MGP_C57BL6NJ_G0038182.1 mouse_genomes_project 18 66608112 66608212 - Gm24504 snRNA snRNA MGP_C57BL6NJ_T0101420.1 MGP_C57BL6NJ_G0039466.1 mouse_genomes_project 18 77540334 77540455 - Gm24559 snoRNA snoRNA MGP_C57BL6NJ_T0001139.1 MGP_C57BL6NJ_G0001045.1 mouse_genomes_project 18 56173204 56173416 + TEC TEC MGP_C57BL6NJ_T0050175.1 MGP_C57BL6NJ_G0024864.1 mouse_genomes_project 18 59301132 59519226 - MGP_C57BL6NJ_P0050175 Fbn2 protein_coding protein_coding MGP_C57BL6NJ_T0049853.1 MGP_C57BL6NJ_G0024730.1 mouse_genomes_project 18 37135449 37139331 + MGP_C57BL6NJ_P0049853 Pcdhb13 protein_coding protein_coding MGP_C57BL6NJ_T0050068.1 MGP_C57BL6NJ_G0024823.1 mouse_genomes_project 18 47151906 47161055 - MGP_C57BL6NJ_P0050068 Atg12 protein_coding protein_coding MGP_C57BL6NJ_T0050085.1 MGP_C57BL6NJ_G0024830.1 mouse_genomes_project 18 50332383 50398600 - MGP_C57BL6NJ_P0050085 Dtwd2 protein_coding protein_coding MGP_C57BL6NJ_T0050086.1 MGP_C57BL6NJ_G0024830.1 mouse_genomes_project 18 50332868 50398600 - MGP_C57BL6NJ_P0050086 Dtwd2 protein_coding protein_coding MGP_C57BL6NJ_T0050087.1 MGP_C57BL6NJ_G0024830.1 mouse_genomes_project 18 50333527 50372609 - Dtwd2 protein_coding processed_transcript MGP_C57BL6NJ_T0099049.1 MGP_C57BL6NJ_G0037113.1 mouse_genomes_project 18 10257518 10257632 - Gm22340 rRNA rRNA MGP_C57BL6NJ_T0018099.1 MGP_C57BL6NJ_G0015759.1 mouse_genomes_project 18 58748770 58785349 - 1700066O22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018100.1 MGP_C57BL6NJ_G0015759.1 mouse_genomes_project 18 58752488 58785325 - 1700066O22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018102.1 MGP_C57BL6NJ_G0015759.1 mouse_genomes_project 18 58762203 58785336 - 1700066O22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018103.1 MGP_C57BL6NJ_G0015759.1 mouse_genomes_project 18 58762214 58785313 - 1700066O22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018104.1 MGP_C57BL6NJ_G0015759.1 mouse_genomes_project 18 58782029 58785320 - 1700066O22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0050031.1 MGP_C57BL6NJ_G0024807.1 mouse_genomes_project 18 44429560 44435718 - MGP_C57BL6NJ_P0050031 Spink11 protein_coding protein_coding MGP_C57BL6NJ_T0050032.1 MGP_C57BL6NJ_G0024807.1 mouse_genomes_project 18 44429970 44431861 - Spink11 protein_coding retained_intron MGP_C57BL6NJ_T0049765.1 MGP_C57BL6NJ_G0024684.1 mouse_genomes_project 18 36014314 36076211 - MGP_C57BL6NJ_P0049765 Pfdn1 protein_coding protein_coding MGP_C57BL6NJ_T0050189.1 MGP_C57BL6NJ_G0024872.1 mouse_genomes_project 18 61763971 61773238 + MGP_C57BL6NJ_P0050189 F830016B08Rik protein_coding protein_coding MGP_C57BL6NJ_T0013675.1 MGP_C57BL6NJ_G0011720.1 mouse_genomes_project 18 61669887 61671103 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003983.1 MGP_C57BL6NJ_G0003564.1 mouse_genomes_project 18 72245492 72248182 + 4930448D08Rik antisense antisense MGP_C57BL6NJ_T0013640.1 MGP_C57BL6NJ_G0011685.1 mouse_genomes_project 18 13938430 13939483 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101408.1 MGP_C57BL6NJ_G0039454.1 mouse_genomes_project 18 34450110 34450180 - Gm26109 snoRNA snoRNA MGP_C57BL6NJ_T0101398.1 MGP_C57BL6NJ_G0039444.1 mouse_genomes_project 18 15091749 15091879 + Gm22470 snoRNA snoRNA MGP_C57BL6NJ_T0049484.1 MGP_C57BL6NJ_G0024571.1 mouse_genomes_project 18 10730028 10748865 + MGP_C57BL6NJ_P0049484 Hrh4 protein_coding protein_coding MGP_C57BL6NJ_T0049885.1 MGP_C57BL6NJ_G0024754.1 mouse_genomes_project 18 37440760 37559699 + MGP_C57BL6NJ_P0049885 Pcdhga9 protein_coding protein_coding MGP_C57BL6NJ_T0049886.1 MGP_C57BL6NJ_G0024754.1 mouse_genomes_project 18 37441193 37444230 + Pcdhga9 protein_coding retained_intron MGP_C57BL6NJ_T0050337.1 MGP_C57BL6NJ_G0024923.1 mouse_genomes_project 18 67606894 67658539 + MGP_C57BL6NJ_P0050337 Oacyl protein_coding protein_coding MGP_C57BL6NJ_T0050338.1 MGP_C57BL6NJ_G0024923.1 mouse_genomes_project 18 67606896 67658603 + MGP_C57BL6NJ_P0050338 Oacyl protein_coding protein_coding MGP_C57BL6NJ_T0050339.1 MGP_C57BL6NJ_G0024923.1 mouse_genomes_project 18 67656015 67657392 + Oacyl protein_coding processed_transcript MGP_C57BL6NJ_T0049650.1 MGP_C57BL6NJ_G0024646.1 mouse_genomes_project 18 33783467 33811975 - MGP_C57BL6NJ_P0049650 Reep5 protein_coding protein_coding MGP_C57BL6NJ_T0100123.1 MGP_C57BL6NJ_G0038169.1 mouse_genomes_project 18 46875433 46875527 - Gm24076 snRNA snRNA MGP_C57BL6NJ_T0010455.1 MGP_C57BL6NJ_G0008540.1 mouse_genomes_project 18 8182390 8182512 + Mir1b miRNA miRNA MGP_C57BL6NJ_T0018080.1 MGP_C57BL6NJ_G0015752.1 mouse_genomes_project 18 36839844 36858513 - Gm10544 processed_transcript antisense MGP_C57BL6NJ_T0018081.1 MGP_C57BL6NJ_G0015752.1 mouse_genomes_project 18 36855586 36858497 - Gm10544 processed_transcript antisense MGP_C57BL6NJ_T0018082.1 MGP_C57BL6NJ_G0015752.1 mouse_genomes_project 18 36856747 36858505 - Gm10544 processed_transcript retained_intron MGP_C57BL6NJ_T0049760.1 MGP_C57BL6NJ_G0024683.1 mouse_genomes_project 18 35953693 35974677 + MGP_C57BL6NJ_P0049760 Cystm1 protein_coding protein_coding MGP_C57BL6NJ_T0049761.1 MGP_C57BL6NJ_G0024683.1 mouse_genomes_project 18 35956661 36013616 + MGP_C57BL6NJ_P0049761 Cystm1 protein_coding protein_coding MGP_C57BL6NJ_T0049762.1 MGP_C57BL6NJ_G0024683.1 mouse_genomes_project 18 35956727 35976212 + Cystm1 protein_coding retained_intron MGP_C57BL6NJ_T0049763.1 MGP_C57BL6NJ_G0024683.1 mouse_genomes_project 18 35956738 36003733 + MGP_C57BL6NJ_P0049763 Cystm1 protein_coding protein_coding MGP_C57BL6NJ_T0049764.1 MGP_C57BL6NJ_G0024683.1 mouse_genomes_project 18 35973737 36013176 + MGP_C57BL6NJ_P0049764 Cystm1 protein_coding protein_coding MGP_C57BL6NJ_T0049689.1 MGP_C57BL6NJ_G0024662.1 mouse_genomes_project 18 34410122 34439433 - MGP_C57BL6NJ_P0049689 Etf1 protein_coding protein_coding MGP_C57BL6NJ_T0049690.1 MGP_C57BL6NJ_G0024662.1 mouse_genomes_project 18 34439259 34439367 - MGP_C57BL6NJ_P0049690 Etf1 protein_coding protein_coding MGP_C57BL6NJ_T0100121.1 MGP_C57BL6NJ_G0038167.1 mouse_genomes_project 18 38046019 38046122 + Gm23205 snRNA snRNA MGP_C57BL6NJ_T0011707.1 MGP_C57BL6NJ_G0009792.1 mouse_genomes_project 18 14005210 14005511 + Gm22389 misc_RNA misc_RNA MGP_C57BL6NJ_T0050113.1 MGP_C57BL6NJ_G0024836.1 mouse_genomes_project 18 51854997 52077077 + MGP_C57BL6NJ_P0050113 Prr16 protein_coding protein_coding MGP_C57BL6NJ_T0013648.1 MGP_C57BL6NJ_G0011693.1 mouse_genomes_project 18 31234368 31234526 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018075.1 MGP_C57BL6NJ_G0015751.1 mouse_genomes_project 18 35089224 35094170 + Snhg4 processed_transcript lincRNA MGP_C57BL6NJ_T0018076.1 MGP_C57BL6NJ_G0015751.1 mouse_genomes_project 18 35089263 35090618 + Snhg4 processed_transcript retained_intron MGP_C57BL6NJ_T0018077.1 MGP_C57BL6NJ_G0015751.1 mouse_genomes_project 18 35089265 35093084 + Snhg4 processed_transcript retained_intron MGP_C57BL6NJ_T0018078.1 MGP_C57BL6NJ_G0015751.1 mouse_genomes_project 18 35089275 35091818 + Snhg4 processed_transcript retained_intron MGP_C57BL6NJ_T0018079.1 MGP_C57BL6NJ_G0015751.1 mouse_genomes_project 18 35091992 35093250 + Snhg4 processed_transcript retained_intron MGP_C57BL6NJ_T0101409.1 MGP_C57BL6NJ_G0039455.1 mouse_genomes_project 18 35090345 35090486 + Mir1949 snoRNA snoRNA MGP_C57BL6NJ_T0049872.1 MGP_C57BL6NJ_G0024746.1 mouse_genomes_project 18 37384539 37559702 + MGP_C57BL6NJ_P0049872 Pcdhga4 protein_coding protein_coding MGP_C57BL6NJ_T0049873.1 MGP_C57BL6NJ_G0024746.1 mouse_genomes_project 18 37386213 37387109 + MGP_C57BL6NJ_P0049873 Pcdhga4 protein_coding protein_coding MGP_C57BL6NJ_T0007199.1 MGP_C57BL6NJ_G0005917.1 mouse_genomes_project 18 50449114 50463716 - 1700065O20Rik lincRNA lincRNA MGP_C57BL6NJ_T0049893.1 MGP_C57BL6NJ_G0024760.1 mouse_genomes_project 18 37521090 37524470 + Pcdhgc3 protein_coding retained_intron MGP_C57BL6NJ_T0049894.1 MGP_C57BL6NJ_G0024760.1 mouse_genomes_project 18 37521136 37559702 + MGP_C57BL6NJ_P0049894 Pcdhgc3 protein_coding protein_coding MGP_C57BL6NJ_T0049895.1 MGP_C57BL6NJ_G0024760.1 mouse_genomes_project 18 37521142 37559702 + MGP_C57BL6NJ_P0049895 Pcdhgc3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100131.1 MGP_C57BL6NJ_G0038177.1 mouse_genomes_project 18 63019539 63019640 - Gm25834 snRNA snRNA MGP_C57BL6NJ_T0049313.1 MGP_C57BL6NJ_G0024528.1 mouse_genomes_project 18 1124567 1142507 + MGP_C57BL6NJ_P0049313 Lyzl1 protein_coding protein_coding MGP_C57BL6NJ_T0049314.1 MGP_C57BL6NJ_G0024528.1 mouse_genomes_project 18 1124597 1142507 + MGP_C57BL6NJ_P0049314 Lyzl1 protein_coding protein_coding MGP_C57BL6NJ_T0049988.1 MGP_C57BL6NJ_G0024783.1 mouse_genomes_project 18 42030942 42043657 - MGP_C57BL6NJ_P0049988 Grxcr2 protein_coding protein_coding MGP_C57BL6NJ_T0050664.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87386051 87843011 - MGP_C57BL6NJ_P0050664 Zfp407 protein_coding protein_coding MGP_C57BL6NJ_T0050665.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87472454 87883471 - MGP_C57BL6NJ_P0050665 Zfp407 protein_coding protein_coding MGP_C57BL6NJ_T0050666.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87548540 87686703 - Zfp407 protein_coding processed_transcript MGP_C57BL6NJ_T0050667.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87704273 87709222 - Zfp407 protein_coding retained_intron MGP_C57BL6NJ_T0050668.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87776025 87842961 - Zfp407 protein_coding processed_transcript MGP_C57BL6NJ_T0050669.1 MGP_C57BL6NJ_G0025018.1 mouse_genomes_project 18 87837497 87883692 - Zfp407 protein_coding processed_transcript MGP_C57BL6NJ_T0050700.1 MGP_C57BL6NJ_G0025031.1 mouse_genomes_project 18 92970566 93483057 - MGP_C57BL6NJ_P0050700 Dok6 protein_coding protein_coding MGP_C57BL6NJ_T0050701.1 MGP_C57BL6NJ_G0025031.1 mouse_genomes_project 18 93152602 93250903 - Dok6 protein_coding retained_intron MGP_C57BL6NJ_T0018094.1 MGP_C57BL6NJ_G0015757.1 mouse_genomes_project 18 50700814 50711729 - C030005K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018095.1 MGP_C57BL6NJ_G0015757.1 mouse_genomes_project 18 50704266 50711913 - C030005K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018096.1 MGP_C57BL6NJ_G0015757.1 mouse_genomes_project 18 50710367 50711913 - C030005K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018097.1 MGP_C57BL6NJ_G0015757.1 mouse_genomes_project 18 50710387 50711674 - C030005K06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0049623.1 MGP_C57BL6NJ_G0024637.1 mouse_genomes_project 18 32088628 32093045 + MGP_C57BL6NJ_P0049623 Tslp protein_coding protein_coding MGP_C57BL6NJ_T0001134.1 MGP_C57BL6NJ_G0001040.1 mouse_genomes_project 18 6191533 6193125 + TEC TEC MGP_C57BL6NJ_T0013671.1 MGP_C57BL6NJ_G0011716.1 mouse_genomes_project 18 56823701 56824679 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049433.1 MGP_C57BL6NJ_G0024559.1 mouse_genomes_project 18 9239390 9352870 + MGP_C57BL6NJ_P0049433 Rbbp8 protein_coding protein_coding MGP_C57BL6NJ_T0049434.1 MGP_C57BL6NJ_G0024559.1 mouse_genomes_project 18 9264485 9352870 + MGP_C57BL6NJ_P0049434 Rbbp8 protein_coding protein_coding MGP_C57BL6NJ_T0100128.1 MGP_C57BL6NJ_G0038174.1 mouse_genomes_project 18 56212494 56212574 + Gm22597 snRNA snRNA MGP_C57BL6NJ_T0049604.1 MGP_C57BL6NJ_G0024625.1 mouse_genomes_project 18 30985468 31099295 + MGP_C57BL6NJ_P0049604 Wdr33 protein_coding protein_coding MGP_C57BL6NJ_T0049605.1 MGP_C57BL6NJ_G0024625.1 mouse_genomes_project 18 30985468 31027813 + MGP_C57BL6NJ_P0049605 Wdr33 protein_coding protein_coding MGP_C57BL6NJ_T0050600.1 MGP_C57BL6NJ_G0025004.1 mouse_genomes_project 18 83196612 83213270 + MGP_C57BL6NJ_P0050600 Txnl4a protein_coding protein_coding MGP_C57BL6NJ_T0050604.1 MGP_C57BL6NJ_G0025004.1 mouse_genomes_project 18 83196680 83211939 + MGP_C57BL6NJ_P0050604 Txnl4a protein_coding protein_coding MGP_C57BL6NJ_T0050606.1 MGP_C57BL6NJ_G0025004.1 mouse_genomes_project 18 83196711 83208616 + Txnl4a protein_coding retained_intron MGP_C57BL6NJ_T0050611.1 MGP_C57BL6NJ_G0025004.1 mouse_genomes_project 18 83205197 83212075 + Txnl4a protein_coding processed_transcript MGP_C57BL6NJ_T0003947.1 MGP_C57BL6NJ_G0003537.1 mouse_genomes_project 18 8178667 8182828 - Mir133a-1hg antisense antisense MGP_C57BL6NJ_T0050305.1 MGP_C57BL6NJ_G0024914.1 mouse_genomes_project 18 66018262 66043652 + MGP_C57BL6NJ_P0050305 St8sia3 protein_coding protein_coding MGP_C57BL6NJ_T0050306.1 MGP_C57BL6NJ_G0024914.1 mouse_genomes_project 18 66030567 66037797 + MGP_C57BL6NJ_P0050306 St8sia3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050307.1 MGP_C57BL6NJ_G0024914.1 mouse_genomes_project 18 66031999 66035980 + MGP_C57BL6NJ_P0050307 St8sia3 protein_coding protein_coding MGP_C57BL6NJ_T0050308.1 MGP_C57BL6NJ_G0024914.1 mouse_genomes_project 18 66032180 66035837 + St8sia3 protein_coding processed_transcript MGP_C57BL6NJ_T0050309.1 MGP_C57BL6NJ_G0024914.1 mouse_genomes_project 18 66032811 66035909 + St8sia3 protein_coding retained_intron MGP_C57BL6NJ_T0007216.1 MGP_C57BL6NJ_G0005930.1 mouse_genomes_project 18 78507998 78509270 + 1700034B16Rik lincRNA lincRNA MGP_C57BL6NJ_T0007201.1 MGP_C57BL6NJ_G0005919.1 mouse_genomes_project 18 55998445 56004695 + Gm26742 lincRNA lincRNA MGP_C57BL6NJ_T0049567.1 MGP_C57BL6NJ_G0024608.1 mouse_genomes_project 18 23179928 23230404 - MGP_C57BL6NJ_P0049567 Rprd1a protein_coding protein_coding MGP_C57BL6NJ_T0049806.1 MGP_C57BL6NJ_G0024698.1 mouse_genomes_project 18 36416223 36434672 - MGP_C57BL6NJ_P0049806 Hars protein_coding protein_coding MGP_C57BL6NJ_T0049820.1 MGP_C57BL6NJ_G0024704.1 mouse_genomes_project 18 36611091 36867648 + MGP_C57BL6NJ_P0049820 protein_coding protein_coding MGP_C57BL6NJ_T0049821.1 MGP_C57BL6NJ_G0024704.1 mouse_genomes_project 18 36611101 36614018 + protein_coding retained_intron MGP_C57BL6NJ_T0049822.1 MGP_C57BL6NJ_G0024704.1 mouse_genomes_project 18 36611118 36867652 + MGP_C57BL6NJ_P0049822 protein_coding protein_coding MGP_C57BL6NJ_T0049949.1 MGP_C57BL6NJ_G0024774.1 mouse_genomes_project 18 38380610 38395604 - MGP_C57BL6NJ_P0049949 Spry4 protein_coding protein_coding MGP_C57BL6NJ_T0010490.1 MGP_C57BL6NJ_G0008575.1 mouse_genomes_project 18 70920300 70920402 + Mir6356 miRNA miRNA MGP_C57BL6NJ_T0049614.1 MGP_C57BL6NJ_G0024633.1 mouse_genomes_project 18 31374604 31453781 + MGP_C57BL6NJ_P0049614 Map3k2 protein_coding protein_coding MGP_C57BL6NJ_T0050653.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85698166 85820810 - MGP_C57BL6NJ_P0050653 Zfp236 protein_coding protein_coding MGP_C57BL6NJ_T0050654.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85700049 85723872 - MGP_C57BL6NJ_P0050654 Zfp236 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050655.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85701728 85820680 - MGP_C57BL6NJ_P0050655 Zfp236 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050656.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85702206 85802797 - MGP_C57BL6NJ_P0050656 Zfp236 protein_coding protein_coding MGP_C57BL6NJ_T0050657.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85747705 85748889 - Zfp236 protein_coding retained_intron MGP_C57BL6NJ_T0050658.1 MGP_C57BL6NJ_G0025014.1 mouse_genomes_project 18 85793438 85809226 - MGP_C57BL6NJ_P0050658 Zfp236 protein_coding protein_coding MGP_C57BL6NJ_T0049987.1 MGP_C57BL6NJ_G0024782.1 mouse_genomes_project 18 41905463 41997979 - MGP_C57BL6NJ_P0049987 Prelid2 protein_coding protein_coding MGP_C57BL6NJ_T0049983.1 MGP_C57BL6NJ_G0024778.1 mouse_genomes_project 18 39637175 39639761 + MGP_C57BL6NJ_P0049983 Pabpc2 protein_coding protein_coding MGP_C57BL6NJ_T0101399.1 MGP_C57BL6NJ_G0039445.1 mouse_genomes_project 18 21766294 21766420 + Gm22495 snoRNA snoRNA MGP_C57BL6NJ_T0003962.1 MGP_C57BL6NJ_G0003549.1 mouse_genomes_project 18 37356019 37356700 - Gm37118 antisense antisense MGP_C57BL6NJ_T0050684.1 MGP_C57BL6NJ_G0025023.1 mouse_genomes_project 18 88260930 88310153 + MGP_C57BL6NJ_P0050684 Fbxo15 protein_coding protein_coding MGP_C57BL6NJ_T0050686.1 MGP_C57BL6NJ_G0025023.1 mouse_genomes_project 18 88277939 88310153 + MGP_C57BL6NJ_P0050686 Fbxo15 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049336.1 MGP_C57BL6NJ_G0024533.1 mouse_genomes_project 18 2217022 2347684 - MGP_C57BL6NJ_P0049336 Zfp438 protein_coding protein_coding MGP_C57BL6NJ_T0050170.1 MGP_C57BL6NJ_G0024862.1 mouse_genomes_project 18 58785376 59012987 + MGP_C57BL6NJ_P0050170 1700011I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0050171.1 MGP_C57BL6NJ_G0024862.1 mouse_genomes_project 18 58785425 59012987 + MGP_C57BL6NJ_P0050171 1700011I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0050172.1 MGP_C57BL6NJ_G0024862.1 mouse_genomes_project 18 58785478 58818749 + MGP_C57BL6NJ_P0050172 1700011I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0050173.1 MGP_C57BL6NJ_G0024862.1 mouse_genomes_project 18 58814978 59012928 + MGP_C57BL6NJ_P0050173 1700011I03Rik protein_coding protein_coding MGP_C57BL6NJ_T0013651.1 MGP_C57BL6NJ_G0011696.1 mouse_genomes_project 18 34482014 34482238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010474.1 MGP_C57BL6NJ_G0008559.1 mouse_genomes_project 18 57338345 57338530 + Gm25476 miRNA miRNA MGP_C57BL6NJ_T0001140.1 MGP_C57BL6NJ_G0001046.1 mouse_genomes_project 18 56384102 56384534 + TEC TEC MGP_C57BL6NJ_T0011706.1 MGP_C57BL6NJ_G0009791.1 mouse_genomes_project 18 10683076 10683383 + Gm26407 misc_RNA misc_RNA MGP_C57BL6NJ_T0100109.1 MGP_C57BL6NJ_G0038155.1 mouse_genomes_project 18 665865 665929 - Gm23643 snRNA snRNA MGP_C57BL6NJ_T0049842.1 MGP_C57BL6NJ_G0024721.1 mouse_genomes_project 18 36999387 37004041 + MGP_C57BL6NJ_P0049842 Pcdhb4 protein_coding protein_coding MGP_C57BL6NJ_T0007218.1 MGP_C57BL6NJ_G0005932.1 mouse_genomes_project 18 84263746 84273565 - 4930594M17Rik lincRNA lincRNA MGP_C57BL6NJ_T0049825.1 MGP_C57BL6NJ_G0024707.1 mouse_genomes_project 18 36629694 36867648 + MGP_C57BL6NJ_P0049825 protein_coding protein_coding MGP_C57BL6NJ_T0049681.1 MGP_C57BL6NJ_G0024657.1 mouse_genomes_project 18 34241102 34242546 + MGP_C57BL6NJ_P0049681 Gm3550 protein_coding protein_coding MGP_C57BL6NJ_T0049612.1 MGP_C57BL6NJ_G0024631.1 mouse_genomes_project 18 31271508 31311963 + MGP_C57BL6NJ_P0049612 Iws1 protein_coding protein_coding MGP_C57BL6NJ_T0013650.1 MGP_C57BL6NJ_G0011695.1 mouse_genomes_project 18 34482012 34482238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011726.1 MGP_C57BL6NJ_G0009811.1 mouse_genomes_project 18 68684566 68684885 + Gm22219 misc_RNA misc_RNA MGP_C57BL6NJ_T0010465.1 MGP_C57BL6NJ_G0008550.1 mouse_genomes_project 18 36469005 36469115 + Gm23424 miRNA miRNA MGP_C57BL6NJ_T0050061.1 MGP_C57BL6NJ_G0024820.1 mouse_genomes_project 18 46969758 47011499 - MGP_C57BL6NJ_P0050061 Tmed7 protein_coding protein_coding MGP_C57BL6NJ_T0050063.1 MGP_C57BL6NJ_G0024820.1 mouse_genomes_project 18 46997462 47011701 - Tmed7 protein_coding retained_intron MGP_C57BL6NJ_T0050064.1 MGP_C57BL6NJ_G0024820.1 mouse_genomes_project 18 46999555 47011720 - MGP_C57BL6NJ_P0050064 Tmed7 protein_coding protein_coding MGP_C57BL6NJ_T0050117.1 MGP_C57BL6NJ_G0024840.1 mouse_genomes_project 18 53381211 53398983 - MGP_C57BL6NJ_P0050117 Lox protein_coding protein_coding MGP_C57BL6NJ_T0050118.1 MGP_C57BL6NJ_G0024840.1 mouse_genomes_project 18 53382380 53395387 - MGP_C57BL6NJ_P0050118 Lox protein_coding protein_coding MGP_C57BL6NJ_T0049608.1 MGP_C57BL6NJ_G0024628.1 mouse_genomes_project 18 31125547 31155505 + MGP_C57BL6NJ_P0049608 Lims2 protein_coding protein_coding MGP_C57BL6NJ_T0049610.1 MGP_C57BL6NJ_G0024628.1 mouse_genomes_project 18 31150976 31154876 + MGP_C57BL6NJ_P0049610 Lims2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099059.1 MGP_C57BL6NJ_G0037123.1 mouse_genomes_project 18 76079821 76079969 - n-R5-8s1 rRNA rRNA MGP_C57BL6NJ_T0050524.1 MGP_C57BL6NJ_G0024977.1 mouse_genomes_project 18 78057232 78085754 + MGP_C57BL6NJ_P0050524 Smad7 protein_coding protein_coding MGP_C57BL6NJ_T0050525.1 MGP_C57BL6NJ_G0024977.1 mouse_genomes_project 18 78058586 78085255 + MGP_C57BL6NJ_P0050525 Smad7 protein_coding protein_coding MGP_C57BL6NJ_T0050526.1 MGP_C57BL6NJ_G0024977.1 mouse_genomes_project 18 78058693 78083762 + MGP_C57BL6NJ_P0050526 Smad7 protein_coding protein_coding MGP_C57BL6NJ_T0050527.1 MGP_C57BL6NJ_G0024977.1 mouse_genomes_project 18 78059679 78084141 + MGP_C57BL6NJ_P0050527 Smad7 protein_coding protein_coding MGP_C57BL6NJ_T0050528.1 MGP_C57BL6NJ_G0024977.1 mouse_genomes_project 18 78064631 78083777 + Smad7 protein_coding processed_transcript MGP_C57BL6NJ_T0099253.1 MGP_C57BL6NJ_G0037317.1 mouse_genomes_project 18 77395984 77396124 - Gm23119 scaRNA scaRNA MGP_C57BL6NJ_T0003948.1 MGP_C57BL6NJ_G0003538.1 mouse_genomes_project 18 9837062 9841970 + Gm15956 antisense antisense MGP_C57BL6NJ_T0049602.1 MGP_C57BL6NJ_G0024623.1 mouse_genomes_project 18 30937607 30964076 + MGP_C57BL6NJ_P0049602 Ammecr1l protein_coding protein_coding MGP_C57BL6NJ_T0050380.1 MGP_C57BL6NJ_G0024944.1 mouse_genomes_project 18 69914841 70009784 + MGP_C57BL6NJ_P0050380 Cep192 protein_coding protein_coding MGP_C57BL6NJ_T0050381.1 MGP_C57BL6NJ_G0024944.1 mouse_genomes_project 18 69917656 70009493 + MGP_C57BL6NJ_P0050381 Cep192 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049540.1 MGP_C57BL6NJ_G0024599.1 mouse_genomes_project 18 22050553 22301941 + MGP_C57BL6NJ_P0049540 Dtna protein_coding protein_coding MGP_C57BL6NJ_T0049541.1 MGP_C57BL6NJ_G0024599.1 mouse_genomes_project 18 22050553 22244311 + MGP_C57BL6NJ_P0049541 Dtna protein_coding protein_coding MGP_C57BL6NJ_T0049542.1 MGP_C57BL6NJ_G0024599.1 mouse_genomes_project 18 22261414 22276886 + MGP_C57BL6NJ_P0049542 Dtna protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049315.1 MGP_C57BL6NJ_G0024529.1 mouse_genomes_project 18 1308126 1329713 - MGP_C57BL6NJ_P0049315 Map3k8 protein_coding protein_coding MGP_C57BL6NJ_T0049316.1 MGP_C57BL6NJ_G0024529.1 mouse_genomes_project 18 1308139 1329717 - MGP_C57BL6NJ_P0049316 Map3k8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049317.1 MGP_C57BL6NJ_G0024529.1 mouse_genomes_project 18 1308140 1313095 - Map3k8 protein_coding processed_transcript MGP_C57BL6NJ_T0049318.1 MGP_C57BL6NJ_G0024529.1 mouse_genomes_project 18 1310644 1311848 - Map3k8 protein_coding retained_intron MGP_C57BL6NJ_T0049319.1 MGP_C57BL6NJ_G0024529.1 mouse_genomes_project 18 1324254 1329775 - Map3k8 protein_coding retained_intron MGP_C57BL6NJ_T0101419.1 MGP_C57BL6NJ_G0039465.1 mouse_genomes_project 18 69541335 69541469 + Gm24900 snoRNA snoRNA MGP_C57BL6NJ_T0049654.1 MGP_C57BL6NJ_G0024649.1 mouse_genomes_project 18 34003972 34009933 + MGP_C57BL6NJ_P0049654 Wnt8a protein_coding protein_coding MGP_C57BL6NJ_T0101416.1 MGP_C57BL6NJ_G0039462.1 mouse_genomes_project 18 59960201 59960332 - Gm23270 snoRNA snoRNA MGP_C57BL6NJ_T0050008.1 MGP_C57BL6NJ_G0024793.1 mouse_genomes_project 18 43367775 43489837 + MGP_C57BL6NJ_P0050008 Stk32a protein_coding protein_coding MGP_C57BL6NJ_T0049626.1 MGP_C57BL6NJ_G0024639.1 mouse_genomes_project 18 32222748 32518761 + MGP_C57BL6NJ_P0049626 Camk4 protein_coding protein_coding MGP_C57BL6NJ_T0049432.1 MGP_C57BL6NJ_G0024558.1 mouse_genomes_project 18 8478119 8516202 + MGP_C57BL6NJ_P0049432 Gata6 protein_coding protein_coding MGP_C57BL6NJ_T0100111.1 MGP_C57BL6NJ_G0038157.1 mouse_genomes_project 18 7086846 7086949 - Gm23350 snRNA snRNA MGP_C57BL6NJ_T0050382.1 MGP_C57BL6NJ_G0024945.1 mouse_genomes_project 18 70059694 70391803 + MGP_C57BL6NJ_P0050382 Ldlrad4 protein_coding protein_coding MGP_C57BL6NJ_T0049705.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35097999 35108342 + MGP_C57BL6NJ_P0049705 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049706.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098045 35107975 + MGP_C57BL6NJ_P0049706 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049707.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098064 35126438 + MGP_C57BL6NJ_P0049707 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049708.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098070 35126461 + MGP_C57BL6NJ_P0049708 Matr3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049709.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098072 35126421 + MGP_C57BL6NJ_P0049709 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049710.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098152 35126369 + MGP_C57BL6NJ_P0049710 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049711.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098340 35114861 + MGP_C57BL6NJ_P0049711 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049712.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098536 35108055 + MGP_C57BL6NJ_P0049712 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049713.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35098542 35115146 + MGP_C57BL6NJ_P0049713 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049714.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35107778 35109559 + Matr3 protein_coding retained_intron MGP_C57BL6NJ_T0049715.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35107875 35126270 + MGP_C57BL6NJ_P0049715 Matr3 protein_coding protein_coding MGP_C57BL6NJ_T0049716.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35113753 35115129 + Matr3 protein_coding retained_intron MGP_C57BL6NJ_T0049717.1 MGP_C57BL6NJ_G0024668.1 mouse_genomes_project 18 35114879 35116579 + Matr3 protein_coding retained_intron MGP_C57BL6NJ_T0001141.1 MGP_C57BL6NJ_G0001047.1 mouse_genomes_project 18 56574883 56575876 - TEC TEC MGP_C57BL6NJ_T0099052.1 MGP_C57BL6NJ_G0037116.1 mouse_genomes_project 18 33966165 33966282 + n-R5s24 rRNA rRNA MGP_C57BL6NJ_T0050636.1 MGP_C57BL6NJ_G0025012.1 mouse_genomes_project 18 85471647 85485928 - MGP_C57BL6NJ_P0050636 Galr1 protein_coding protein_coding MGP_C57BL6NJ_T0013681.1 MGP_C57BL6NJ_G0011726.1 mouse_genomes_project 18 87954924 87957995 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007187.1 MGP_C57BL6NJ_G0005909.1 mouse_genomes_project 18 33186544 33187639 + Epb41l4aos lincRNA lincRNA MGP_C57BL6NJ_T0007188.1 MGP_C57BL6NJ_G0005909.1 mouse_genomes_project 18 33186591 33187622 + Epb41l4aos lincRNA lincRNA MGP_C57BL6NJ_T0049838.1 MGP_C57BL6NJ_G0024718.1 mouse_genomes_project 18 36953895 36956483 + MGP_C57BL6NJ_P0049838 Pcdhb1 protein_coding protein_coding MGP_C57BL6NJ_T0018093.1 MGP_C57BL6NJ_G0015756.1 mouse_genomes_project 18 50398792 50400180 + Gm16283 processed_transcript processed_transcript MGP_C57BL6NJ_T0003972.1 MGP_C57BL6NJ_G0003558.1 mouse_genomes_project 18 46013318 46242791 - antisense antisense MGP_C57BL6NJ_T0003973.1 MGP_C57BL6NJ_G0003558.1 mouse_genomes_project 18 46014961 46206336 - antisense antisense MGP_C57BL6NJ_T0049994.1 MGP_C57BL6NJ_G0024786.1 mouse_genomes_project 18 42258136 42273365 - MGP_C57BL6NJ_P0049994 Plac8l1 protein_coding protein_coding MGP_C57BL6NJ_T0050537.1 MGP_C57BL6NJ_G0024981.1 mouse_genomes_project 18 79622851 79671965 + MGP_C57BL6NJ_P0050537 Skor2 protein_coding protein_coding MGP_C57BL6NJ_T0050201.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62070684 62100994 - MGP_C57BL6NJ_P0050201 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050202.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62070693 62101231 - MGP_C57BL6NJ_P0050202 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050203.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62070701 62106504 - MGP_C57BL6NJ_P0050203 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050204.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62070702 62077190 - Synpo protein_coding processed_transcript MGP_C57BL6NJ_T0050205.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62076898 62100894 - MGP_C57BL6NJ_P0050205 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050206.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62076899 62086793 - MGP_C57BL6NJ_P0050206 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050207.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62076901 62124947 - MGP_C57BL6NJ_P0050207 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050208.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62080801 62099983 - MGP_C57BL6NJ_P0050208 Synpo protein_coding protein_coding MGP_C57BL6NJ_T0050209.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62080952 62100920 - Synpo protein_coding processed_transcript MGP_C57BL6NJ_T0050210.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62082574 62136770 - Synpo protein_coding processed_transcript MGP_C57BL6NJ_T0050211.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62106148 62124900 - Synpo protein_coding processed_transcript MGP_C57BL6NJ_T0050212.1 MGP_C57BL6NJ_G0024878.1 mouse_genomes_project 18 62122324 62124900 - Synpo protein_coding processed_transcript MGP_C57BL6NJ_T0003949.1 MGP_C57BL6NJ_G0003539.1 mouse_genomes_project 18 10167023 10170260 - Gm29200 antisense antisense MGP_C57BL6NJ_T0049899.1 MGP_C57BL6NJ_G0024762.1 mouse_genomes_project 18 37534180 37559702 + MGP_C57BL6NJ_P0049899 Pcdhgc5 protein_coding protein_coding MGP_C57BL6NJ_T0049900.1 MGP_C57BL6NJ_G0024762.1 mouse_genomes_project 18 37534219 37557880 + MGP_C57BL6NJ_P0049900 Pcdhgc5 protein_coding protein_coding MGP_C57BL6NJ_T0049901.1 MGP_C57BL6NJ_G0024762.1 mouse_genomes_project 18 37534233 37558029 + MGP_C57BL6NJ_P0049901 Pcdhgc5 protein_coding protein_coding MGP_C57BL6NJ_T0049902.1 MGP_C57BL6NJ_G0024762.1 mouse_genomes_project 18 37534321 37557993 + Pcdhgc5 protein_coding retained_intron MGP_C57BL6NJ_T0007185.1 MGP_C57BL6NJ_G0005907.1 mouse_genomes_project 18 31931039 32110956 - 4930455D15Rik lincRNA lincRNA MGP_C57BL6NJ_T0010476.1 MGP_C57BL6NJ_G0008561.1 mouse_genomes_project 18 58958161 58958257 + Gm44491 miRNA miRNA MGP_C57BL6NJ_T0049831.1 MGP_C57BL6NJ_G0024713.1 mouse_genomes_project 18 36677067 36867648 + MGP_C57BL6NJ_P0049831 protein_coding protein_coding MGP_C57BL6NJ_T0049868.1 MGP_C57BL6NJ_G0024743.1 mouse_genomes_project 18 37367026 37559699 + MGP_C57BL6NJ_P0049868 Pcdhga2 protein_coding protein_coding MGP_C57BL6NJ_T0049817.1 MGP_C57BL6NJ_G0024702.1 mouse_genomes_project 18 36597648 36867648 + MGP_C57BL6NJ_P0049817 Pcdha2 protein_coding protein_coding MGP_C57BL6NJ_T0049818.1 MGP_C57BL6NJ_G0024702.1 mouse_genomes_project 18 36597667 36867379 + MGP_C57BL6NJ_P0049818 Pcdha2 protein_coding protein_coding MGP_C57BL6NJ_T0050123.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53665296 53736803 + MGP_C57BL6NJ_P0050123 Sncaip protein_coding protein_coding MGP_C57BL6NJ_T0050124.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53730166 53809924 + MGP_C57BL6NJ_P0050124 Sncaip protein_coding protein_coding MGP_C57BL6NJ_T0050125.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53736726 53810412 + MGP_C57BL6NJ_P0050125 Sncaip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050126.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53736726 53810412 + MGP_C57BL6NJ_P0050126 Sncaip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050127.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53736726 53810119 + MGP_C57BL6NJ_P0050127 Sncaip protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050128.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53736772 53809845 + MGP_C57BL6NJ_P0050128 Sncaip protein_coding protein_coding MGP_C57BL6NJ_T0050129.1 MGP_C57BL6NJ_G0024844.1 mouse_genomes_project 18 53736772 53809845 + MGP_C57BL6NJ_P0050129 Sncaip protein_coding protein_coding MGP_C57BL6NJ_T0050179.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452139 60470935 + MGP_C57BL6NJ_P0050179 A730017C20Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050180.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452173 60470935 + MGP_C57BL6NJ_P0050180 A730017C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050181.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452353 60470935 + MGP_C57BL6NJ_P0050181 A730017C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050182.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452357 60469594 + MGP_C57BL6NJ_P0050182 A730017C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050183.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452385 60469797 + MGP_C57BL6NJ_P0050183 A730017C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0050184.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452401 60468637 + A730017C20Rik protein_coding retained_intron MGP_C57BL6NJ_T0050185.1 MGP_C57BL6NJ_G0024868.1 mouse_genomes_project 18 60452402 60469904 + MGP_C57BL6NJ_P0050185 A730017C20Rik protein_coding protein_coding MGP_C57BL6NJ_T0003981.1 MGP_C57BL6NJ_G0003563.1 mouse_genomes_project 18 72217427 72245425 - 1700061H18Rik antisense antisense MGP_C57BL6NJ_T0003982.1 MGP_C57BL6NJ_G0003563.1 mouse_genomes_project 18 72221045 72245412 - 1700061H18Rik antisense antisense MGP_C57BL6NJ_T0049306.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 268680 324682 + MGP_C57BL6NJ_P0049306 Cul2 protein_coding protein_coding MGP_C57BL6NJ_T0049307.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 268917 323693 + MGP_C57BL6NJ_P0049307 Cul2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049308.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 268924 324685 + MGP_C57BL6NJ_P0049308 Cul2 protein_coding protein_coding MGP_C57BL6NJ_T0049309.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 268949 319839 + MGP_C57BL6NJ_P0049309 Cul2 protein_coding protein_coding MGP_C57BL6NJ_T0049310.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 312639 315438 + Cul2 protein_coding processed_transcript MGP_C57BL6NJ_T0049311.1 MGP_C57BL6NJ_G0024526.1 mouse_genomes_project 18 322191 323321 + Cul2 protein_coding processed_transcript MGP_C57BL6NJ_T0010481.1 MGP_C57BL6NJ_G0008566.1 mouse_genomes_project 18 62462208 62462276 + Mir6982 miRNA miRNA MGP_C57BL6NJ_T0102210.1 MGP_C57BL6NJ_G0040217.1 mouse_genomes_project 18 77966922 77976988 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102211.1 MGP_C57BL6NJ_G0040217.1 mouse_genomes_project 18 77967193 77967451 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102212.1 MGP_C57BL6NJ_G0040217.1 mouse_genomes_project 18 77975345 77977000 - transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0010459.1 MGP_C57BL6NJ_G0008544.1 mouse_genomes_project 18 22419756 22419882 - Mir6360 miRNA miRNA MGP_C57BL6NJ_T0049669.1 MGP_C57BL6NJ_G0024653.1 mouse_genomes_project 18 34108028 34115594 + MGP_C57BL6NJ_P0049669 Kif20a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049375.1 MGP_C57BL6NJ_G0024539.1 mouse_genomes_project 18 3916903 3941939 + MGP_C57BL6NJ_P0049375 Rab18 protein_coding protein_coding MGP_C57BL6NJ_T0050138.1 MGP_C57BL6NJ_G0024850.1 mouse_genomes_project 18 54820829 54916484 + MGP_C57BL6NJ_P0050138 Csnk1g3 protein_coding protein_coding MGP_C57BL6NJ_T0050139.1 MGP_C57BL6NJ_G0024850.1 mouse_genomes_project 18 54854730 54914099 + MGP_C57BL6NJ_P0050139 Csnk1g3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101394.1 MGP_C57BL6NJ_G0039440.1 mouse_genomes_project 18 6928816 6928944 + Gm22765 snoRNA snoRNA MGP_C57BL6NJ_T0050594.1 MGP_C57BL6NJ_G0024998.1 mouse_genomes_project 18 81645340 82035785 - MGP_C57BL6NJ_P0050594 Setbp1 protein_coding protein_coding MGP_C57BL6NJ_T0001144.1 MGP_C57BL6NJ_G0001050.1 mouse_genomes_project 18 83302720 83304241 - TEC TEC MGP_C57BL6NJ_T0049945.1 MGP_C57BL6NJ_G0024772.1 mouse_genomes_project 18 38079361 38089575 - MGP_C57BL6NJ_P0049945 Gnpda1 protein_coding protein_coding MGP_C57BL6NJ_T0049946.1 MGP_C57BL6NJ_G0024772.1 mouse_genomes_project 18 38083722 38085704 - Gnpda1 protein_coding retained_intron MGP_C57BL6NJ_T0049947.1 MGP_C57BL6NJ_G0024772.1 mouse_genomes_project 18 38083814 38089535 - MGP_C57BL6NJ_P0049947 Gnpda1 protein_coding protein_coding MGP_C57BL6NJ_T0049814.1 MGP_C57BL6NJ_G0024700.1 mouse_genomes_project 18 36447790 36453348 + MGP_C57BL6NJ_P0049814 Zmat2 protein_coding protein_coding MGP_C57BL6NJ_T0050598.1 MGP_C57BL6NJ_G0025002.1 mouse_genomes_project 18 83182105 83190499 - MGP_C57BL6NJ_P0050598 Rbfa protein_coding protein_coding MGP_C57BL6NJ_T0050114.1 MGP_C57BL6NJ_G0024837.1 mouse_genomes_project 18 52680764 52682004 - MGP_C57BL6NJ_P0050114 Gm4950 protein_coding protein_coding MGP_C57BL6NJ_T0050002.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42759480 43034923 - Ppp2r2b protein_coding processed_transcript MGP_C57BL6NJ_T0050003.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42768605 43034714 - MGP_C57BL6NJ_P0050003 Ppp2r2b protein_coding protein_coding MGP_C57BL6NJ_T0050004.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42768605 43205434 - MGP_C57BL6NJ_P0050004 Ppp2r2b protein_coding protein_coding MGP_C57BL6NJ_T0050005.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42768630 43035063 - MGP_C57BL6NJ_P0050005 Ppp2r2b protein_coding protein_coding MGP_C57BL6NJ_T0050006.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42867786 43078814 - Ppp2r2b protein_coding processed_transcript MGP_C57BL6NJ_T0050007.1 MGP_C57BL6NJ_G0024792.1 mouse_genomes_project 18 42888306 43034235 - Ppp2r2b protein_coding processed_transcript MGP_C57BL6NJ_T0050168.1 MGP_C57BL6NJ_G0024860.1 mouse_genomes_project 18 58582432 58625042 + MGP_C57BL6NJ_P0050168 Prrc1 protein_coding protein_coding MGP_C57BL6NJ_T0049865.1 MGP_C57BL6NJ_G0024741.1 mouse_genomes_project 18 37334558 37338272 - MGP_C57BL6NJ_P0049865 Taf7 protein_coding protein_coding MGP_C57BL6NJ_T0050532.1 MGP_C57BL6NJ_G0024980.1 mouse_genomes_project 18 79005519 79071474 + MGP_C57BL6NJ_P0050532 Smad2 protein_coding protein_coding MGP_C57BL6NJ_T0050533.1 MGP_C57BL6NJ_G0024980.1 mouse_genomes_project 18 79005732 79071474 + MGP_C57BL6NJ_P0050533 Smad2 protein_coding protein_coding MGP_C57BL6NJ_T0050534.1 MGP_C57BL6NJ_G0024980.1 mouse_genomes_project 18 79005864 79063554 + MGP_C57BL6NJ_P0050534 Smad2 protein_coding protein_coding MGP_C57BL6NJ_T0050535.1 MGP_C57BL6NJ_G0024980.1 mouse_genomes_project 18 79028107 79069386 + MGP_C57BL6NJ_P0050535 Smad2 protein_coding protein_coding MGP_C57BL6NJ_T0050536.1 MGP_C57BL6NJ_G0024980.1 mouse_genomes_project 18 79028107 79064941 + MGP_C57BL6NJ_P0050536 Smad2 protein_coding protein_coding MGP_C57BL6NJ_T0050373.1 MGP_C57BL6NJ_G0024940.1 mouse_genomes_project 18 69703206 69728084 - MGP_C57BL6NJ_P0050373 Cep76 protein_coding protein_coding MGP_C57BL6NJ_T0049593.1 MGP_C57BL6NJ_G0024618.1 mouse_genomes_project 18 30091038 30445770 - MGP_C57BL6NJ_P0049593 Rit2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049594.1 MGP_C57BL6NJ_G0024618.1 mouse_genomes_project 18 30091864 30445613 - MGP_C57BL6NJ_P0049594 Rit2 protein_coding protein_coding MGP_C57BL6NJ_T0049595.1 MGP_C57BL6NJ_G0024618.1 mouse_genomes_project 18 30273026 30337593 - Rit2 protein_coding processed_transcript MGP_C57BL6NJ_T0049596.1 MGP_C57BL6NJ_G0024618.1 mouse_genomes_project 18 30330140 30445591 - MGP_C57BL6NJ_P0049596 Rit2 protein_coding protein_coding MGP_C57BL6NJ_T0001143.1 MGP_C57BL6NJ_G0001049.1 mouse_genomes_project 18 67495840 67497100 + TEC TEC MGP_C57BL6NJ_T0049975.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39253315 39336285 - MGP_C57BL6NJ_P0049975 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049976.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39253317 39332892 - MGP_C57BL6NJ_P0049976 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049977.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39254757 39335481 - MGP_C57BL6NJ_P0049977 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049978.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39257252 39332879 - MGP_C57BL6NJ_P0049978 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049979.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39267037 39335523 - MGP_C57BL6NJ_P0049979 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049980.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39332490 39336766 - MGP_C57BL6NJ_P0049980 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049981.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39332732 39334918 - MGP_C57BL6NJ_P0049981 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0049982.1 MGP_C57BL6NJ_G0024777.1 mouse_genomes_project 18 39332806 39336764 - MGP_C57BL6NJ_P0049982 Nr3c1 protein_coding protein_coding MGP_C57BL6NJ_T0050133.1 MGP_C57BL6NJ_G0024847.1 mouse_genomes_project 18 54340065 54352722 - MGP_C57BL6NJ_P0050133 Ppic protein_coding protein_coding MGP_C57BL6NJ_T0099055.1 MGP_C57BL6NJ_G0037119.1 mouse_genomes_project 18 59543512 59543616 - Gm25660 rRNA rRNA MGP_C57BL6NJ_T0049450.1 MGP_C57BL6NJ_G0024564.1 mouse_genomes_project 18 9832987 9879702 - MGP_C57BL6NJ_P0049450 Npc1 protein_coding protein_coding MGP_C57BL6NJ_T0049451.1 MGP_C57BL6NJ_G0024564.1 mouse_genomes_project 18 9853678 9855849 - Npc1 protein_coding processed_transcript MGP_C57BL6NJ_T0049452.1 MGP_C57BL6NJ_G0024564.1 mouse_genomes_project 18 9860871 9879660 - Npc1 protein_coding retained_intron MGP_C57BL6NJ_T0049453.1 MGP_C57BL6NJ_G0024564.1 mouse_genomes_project 18 9861287 9879628 - Npc1 protein_coding retained_intron MGP_C57BL6NJ_T0049454.1 MGP_C57BL6NJ_G0024564.1 mouse_genomes_project 18 9865139 9867381 - Npc1 protein_coding processed_transcript MGP_C57BL6NJ_T0050263.1 MGP_C57BL6NJ_G0024895.1 mouse_genomes_project 18 63261539 63266139 + MGP_C57BL6NJ_P0050263 Il17b protein_coding protein_coding MGP_C57BL6NJ_T0050048.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45570974 45593380 + Kcnn2 protein_coding processed_transcript MGP_C57BL6NJ_T0050049.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45571119 46015715 + MGP_C57BL6NJ_P0050049 Kcnn2 protein_coding protein_coding MGP_C57BL6NJ_T0050050.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45571119 46015856 + MGP_C57BL6NJ_P0050050 Kcnn2 protein_coding protein_coding MGP_C57BL6NJ_T0050051.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45884527 46001154 + Kcnn2 protein_coding retained_intron MGP_C57BL6NJ_T0050052.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45884869 45918845 + Kcnn2 protein_coding retained_intron MGP_C57BL6NJ_T0050053.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45885212 46005194 + Kcnn2 protein_coding processed_transcript MGP_C57BL6NJ_T0050054.1 MGP_C57BL6NJ_G0024814.1 mouse_genomes_project 18 45885212 46015714 + MGP_C57BL6NJ_P0050054 Kcnn2 protein_coding protein_coding MGP_C57BL6NJ_T0049575.1 MGP_C57BL6NJ_G0024613.1 mouse_genomes_project 18 23412302 23861876 + MGP_C57BL6NJ_P0049575 Fhod3 protein_coding protein_coding MGP_C57BL6NJ_T0102202.1 MGP_C57BL6NJ_G0040213.1 mouse_genomes_project 18 33638426 33653534 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0102203.1 MGP_C57BL6NJ_G0040213.1 mouse_genomes_project 18 33640450 33640722 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0049847.1 MGP_C57BL6NJ_G0024725.1 mouse_genomes_project 18 37049838 37052640 + MGP_C57BL6NJ_P0049847 Pcdhb8 protein_coding protein_coding MGP_C57BL6NJ_T0049848.1 MGP_C57BL6NJ_G0024725.1 mouse_genomes_project 18 37049988 37054639 + MGP_C57BL6NJ_P0049848 Pcdhb8 protein_coding protein_coding MGP_C57BL6NJ_T0018115.1 MGP_C57BL6NJ_G0015762.1 mouse_genomes_project 18 78053534 78055294 - Gm20544 processed_transcript processed_transcript MGP_C57BL6NJ_T0049941.1 MGP_C57BL6NJ_G0024770.1 mouse_genomes_project 18 38011645 38023659 - Pcdh12 protein_coding retained_intron MGP_C57BL6NJ_T0049942.1 MGP_C57BL6NJ_G0024770.1 mouse_genomes_project 18 38013358 38029770 - MGP_C57BL6NJ_P0049942 Pcdh12 protein_coding protein_coding MGP_C57BL6NJ_T0049943.1 MGP_C57BL6NJ_G0024770.1 mouse_genomes_project 18 38026454 38030099 - Pcdh12 protein_coding retained_intron MGP_C57BL6NJ_T0049797.1 MGP_C57BL6NJ_G0024692.1 mouse_genomes_project 18 36372225 36373888 - MGP_C57BL6NJ_P0049797 Cd14 protein_coding protein_coding MGP_C57BL6NJ_T0050580.1 MGP_C57BL6NJ_G0024992.1 mouse_genomes_project 18 80638367 80647507 + MGP_C57BL6NJ_P0050580 Atp5a1 protein_coding protein_coding MGP_C57BL6NJ_T0050581.1 MGP_C57BL6NJ_G0024992.1 mouse_genomes_project 18 80638594 80647504 + MGP_C57BL6NJ_P0050581 Atp5a1 protein_coding protein_coding MGP_C57BL6NJ_T0050582.1 MGP_C57BL6NJ_G0024992.1 mouse_genomes_project 18 80638630 80647293 + MGP_C57BL6NJ_P0050582 Atp5a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050583.1 MGP_C57BL6NJ_G0024992.1 mouse_genomes_project 18 80643592 80645737 + Atp5a1 protein_coding retained_intron MGP_C57BL6NJ_T0050584.1 MGP_C57BL6NJ_G0024992.1 mouse_genomes_project 18 80644469 80646527 + Atp5a1 protein_coding retained_intron MGP_C57BL6NJ_T0013643.1 MGP_C57BL6NJ_G0011688.1 mouse_genomes_project 18 22929135 22930614 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049844.1 MGP_C57BL6NJ_G0024723.1 mouse_genomes_project 18 37028160 37030828 + MGP_C57BL6NJ_P0049844 Pcdhb6 protein_coding protein_coding MGP_C57BL6NJ_T0049845.1 MGP_C57BL6NJ_G0024723.1 mouse_genomes_project 18 37028185 37032241 + MGP_C57BL6NJ_P0049845 Pcdhb6 protein_coding protein_coding MGP_C57BL6NJ_T0007222.1 MGP_C57BL6NJ_G0005935.1 mouse_genomes_project 18 86285174 86286507 - 1700095A13Rik lincRNA lincRNA MGP_C57BL6NJ_T0010452.1 MGP_C57BL6NJ_G0008537.1 mouse_genomes_project 18 7153292 7153386 - Gm23637 miRNA miRNA MGP_C57BL6NJ_T0101397.1 MGP_C57BL6NJ_G0039443.1 mouse_genomes_project 18 13832078 13832207 + Gm24228 snoRNA snoRNA MGP_C57BL6NJ_T0050367.1 MGP_C57BL6NJ_G0024934.1 mouse_genomes_project 18 69361954 69394204 + MGP_C57BL6NJ_P0050367 Impa2 protein_coding protein_coding MGP_C57BL6NJ_T0049419.1 MGP_C57BL6NJ_G0024554.1 mouse_genomes_project 18 7952601 7982698 - Esco1 protein_coding processed_transcript MGP_C57BL6NJ_T0049420.1 MGP_C57BL6NJ_G0024554.1 mouse_genomes_project 18 7952610 7985085 - MGP_C57BL6NJ_P0049420 Esco1 protein_coding protein_coding MGP_C57BL6NJ_T0049421.1 MGP_C57BL6NJ_G0024554.1 mouse_genomes_project 18 7952618 7985093 - MGP_C57BL6NJ_P0049421 Esco1 protein_coding protein_coding MGP_C57BL6NJ_T0049422.1 MGP_C57BL6NJ_G0024554.1 mouse_genomes_project 18 7952618 7985093 - MGP_C57BL6NJ_P0049422 Esco1 protein_coding protein_coding MGP_C57BL6NJ_T0049423.1 MGP_C57BL6NJ_G0024554.1 mouse_genomes_project 18 7952629 7999807 - Esco1 protein_coding processed_transcript MGP_C57BL6NJ_T0010466.1 MGP_C57BL6NJ_G0008551.1 mouse_genomes_project 18 37572427 37572483 - Mir6979 miRNA miRNA MGP_C57BL6NJ_T0007213.1 MGP_C57BL6NJ_G0005927.1 mouse_genomes_project 18 69883799 69884945 - Gm26910 lincRNA lincRNA MGP_C57BL6NJ_T0013638.1 MGP_C57BL6NJ_G0011683.1 mouse_genomes_project 18 10615380 10616020 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049553.1 MGP_C57BL6NJ_G0024603.1 mouse_genomes_project 18 22638549 22655116 + MGP_C57BL6NJ_P0049553 Zfp35 protein_coding protein_coding MGP_C57BL6NJ_T0050022.1 MGP_C57BL6NJ_G0024800.1 mouse_genomes_project 18 43987822 44004380 - MGP_C57BL6NJ_P0050022 Gm94 protein_coding protein_coding MGP_C57BL6NJ_T0049746.1 MGP_C57BL6NJ_G0024678.1 mouse_genomes_project 18 35326531 35364197 + MGP_C57BL6NJ_P0049746 Ube2d2a protein_coding protein_coding MGP_C57BL6NJ_T0049747.1 MGP_C57BL6NJ_G0024678.1 mouse_genomes_project 18 35326574 35364188 + MGP_C57BL6NJ_P0049747 Ube2d2a protein_coding protein_coding MGP_C57BL6NJ_T0049613.1 MGP_C57BL6NJ_G0024632.1 mouse_genomes_project 18 31332163 31350929 - MGP_C57BL6NJ_P0049613 Proc protein_coding protein_coding MGP_C57BL6NJ_T0050304.1 MGP_C57BL6NJ_G0024913.1 mouse_genomes_project 18 65443662 65744781 + MGP_C57BL6NJ_P0050304 Wdr7 protein_coding protein_coding MGP_C57BL6NJ_T0050487.1 MGP_C57BL6NJ_G0024963.1 mouse_genomes_project 18 76316968 76365693 - MGP_C57BL6NJ_P0050487 Me2 protein_coding protein_coding MGP_C57BL6NJ_T0018118.1 MGP_C57BL6NJ_G0015764.1 mouse_genomes_project 18 88017989 88019761 - D030046N08Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0050565.1 MGP_C57BL6NJ_G0024987.1 mouse_genomes_project 18 79978720 80054998 + MGP_C57BL6NJ_P0050565 St8sia5 protein_coding protein_coding MGP_C57BL6NJ_T0050566.1 MGP_C57BL6NJ_G0024987.1 mouse_genomes_project 18 79978846 80054868 + MGP_C57BL6NJ_P0050566 St8sia5 protein_coding protein_coding MGP_C57BL6NJ_T0049611.1 MGP_C57BL6NJ_G0024630.1 mouse_genomes_project 18 31156119 31242757 - MGP_C57BL6NJ_P0049611 Myo7b protein_coding protein_coding MGP_C57BL6NJ_T0001136.1 MGP_C57BL6NJ_G0001042.1 mouse_genomes_project 18 44350248 44350421 + TEC TEC MGP_C57BL6NJ_T0050274.1 MGP_C57BL6NJ_G0024903.1 mouse_genomes_project 18 63938937 64095520 + MGP_C57BL6NJ_P0050274 Htr4 protein_coding protein_coding MGP_C57BL6NJ_T0050635.1 MGP_C57BL6NJ_G0025011.1 mouse_genomes_project 18 83985439 84007783 - MGP_C57BL6NJ_P0050635 Sall3 protein_coding protein_coding MGP_C57BL6NJ_T0003957.1 MGP_C57BL6NJ_G0003544.1 mouse_genomes_project 18 36592395 36593593 - Gm37751 antisense antisense MGP_C57BL6NJ_T0010453.1 MGP_C57BL6NJ_G0008538.1 mouse_genomes_project 18 7734489 7734655 - Gm44409 miRNA miRNA MGP_C57BL6NJ_T0049730.1 MGP_C57BL6NJ_G0024671.1 mouse_genomes_project 18 35188988 35191090 - MGP_C57BL6NJ_P0049730 Mzb1 protein_coding protein_coding MGP_C57BL6NJ_T0050596.1 MGP_C57BL6NJ_G0025000.1 mouse_genomes_project 18 83078379 83079072 - MGP_C57BL6NJ_P0050596 protein_coding protein_coding MGP_C57BL6NJ_T0050119.1 MGP_C57BL6NJ_G0024841.1 mouse_genomes_project 18 53487456 53514342 + MGP_C57BL6NJ_P0050119 Zfp474 protein_coding protein_coding MGP_C57BL6NJ_T0101427.1 MGP_C57BL6NJ_G0039473.1 mouse_genomes_project 18 91510544 91510678 - Gm24987 snoRNA snoRNA MGP_C57BL6NJ_T0050479.1 MGP_C57BL6NJ_G0024960.1 mouse_genomes_project 18 76120785 76140402 + MGP_C57BL6NJ_P0050479 Mex3c protein_coding protein_coding MGP_C57BL6NJ_T0049857.1 MGP_C57BL6NJ_G0024734.1 mouse_genomes_project 18 37180144 37184804 + MGP_C57BL6NJ_P0049857 Pcdhb17 protein_coding protein_coding MGP_C57BL6NJ_T0013654.1 MGP_C57BL6NJ_G0011699.1 mouse_genomes_project 18 36320938 36321909 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050214.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62257221 62261258 + MGP_C57BL6NJ_P0050214 Rps14 protein_coding protein_coding MGP_C57BL6NJ_T0050215.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62257377 62260131 + Rps14 protein_coding retained_intron MGP_C57BL6NJ_T0050216.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62257392 62261253 + MGP_C57BL6NJ_P0050216 Rps14 protein_coding protein_coding MGP_C57BL6NJ_T0050217.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62257940 62260571 + MGP_C57BL6NJ_P0050217 Rps14 protein_coding protein_coding MGP_C57BL6NJ_T0050218.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62258427 62261169 + MGP_C57BL6NJ_P0050218 Rps14 protein_coding protein_coding MGP_C57BL6NJ_T0050219.1 MGP_C57BL6NJ_G0024880.1 mouse_genomes_project 18 62258950 62261257 + MGP_C57BL6NJ_P0050219 Rps14 protein_coding protein_coding MGP_C57BL6NJ_T0049843.1 MGP_C57BL6NJ_G0024722.1 mouse_genomes_project 18 37013249 37016784 + MGP_C57BL6NJ_P0049843 Pcdhb5 protein_coding protein_coding MGP_C57BL6NJ_T0007198.1 MGP_C57BL6NJ_G0005916.1 mouse_genomes_project 18 50155826 50156978 + 1700044K03Rik lincRNA lincRNA MGP_C57BL6NJ_T0003988.1 MGP_C57BL6NJ_G0003568.1 mouse_genomes_project 18 88183211 88184115 - Gm16146 antisense antisense MGP_C57BL6NJ_T0050371.1 MGP_C57BL6NJ_G0024938.1 mouse_genomes_project 18 69543916 69559564 + MGP_C57BL6NJ_P0050371 Slmo1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049993.1 MGP_C57BL6NJ_G0024785.1 mouse_genomes_project 18 42252766 42253060 + MGP_C57BL6NJ_P0049993 Gm5689 protein_coding protein_coding MGP_C57BL6NJ_T0003984.1 MGP_C57BL6NJ_G0003565.1 mouse_genomes_project 18 77131029 77138286 - 1700120E14Rik antisense antisense MGP_C57BL6NJ_T0003985.1 MGP_C57BL6NJ_G0003565.1 mouse_genomes_project 18 77131142 77138268 - 1700120E14Rik antisense antisense MGP_C57BL6NJ_T0050317.1 MGP_C57BL6NJ_G0024920.1 mouse_genomes_project 18 67149032 67283048 - MGP_C57BL6NJ_P0050317 Alpk2 protein_coding protein_coding MGP_C57BL6NJ_T0050318.1 MGP_C57BL6NJ_G0024920.1 mouse_genomes_project 18 67158215 67233641 - MGP_C57BL6NJ_P0050318 Alpk2 protein_coding protein_coding MGP_C57BL6NJ_T0050319.1 MGP_C57BL6NJ_G0024920.1 mouse_genomes_project 18 67248402 67283049 - Alpk2 protein_coding processed_transcript MGP_C57BL6NJ_T0050396.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71579673 71813742 + MGP_C57BL6NJ_P0050396 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050397.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580463 71936622 + MGP_C57BL6NJ_P0050397 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050398.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580806 71941358 + MGP_C57BL6NJ_P0050398 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050399.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580809 71935655 + MGP_C57BL6NJ_P0050399 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050400.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580809 71815402 + MGP_C57BL6NJ_P0050400 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050401.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580814 71822223 + MGP_C57BL6NJ_P0050401 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050402.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71580846 71935543 + MGP_C57BL6NJ_P0050402 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050403.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582036 71935669 + MGP_C57BL6NJ_P0050403 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050404.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582038 71936805 + MGP_C57BL6NJ_P0050404 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050405.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582038 71940246 + MGP_C57BL6NJ_P0050405 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050406.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582066 71935477 + MGP_C57BL6NJ_P0050406 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050407.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582068 71887473 + MGP_C57BL6NJ_P0050407 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050408.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582078 71731607 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050409.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582156 71935477 + MGP_C57BL6NJ_P0050409 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050410.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582478 71884293 + MGP_C57BL6NJ_P0050410 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050411.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71582665 71935504 + MGP_C57BL6NJ_P0050411 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050412.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71586247 71935477 + MGP_C57BL6NJ_P0050412 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050413.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71586293 71596562 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050414.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71587550 71935717 + MGP_C57BL6NJ_P0050414 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050415.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71587806 71935728 + MGP_C57BL6NJ_P0050415 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050416.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71587859 71903060 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050417.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71588213 71893567 + MGP_C57BL6NJ_P0050417 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050418.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71659778 71935718 + MGP_C57BL6NJ_P0050418 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050419.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71743145 71887521 + MGP_C57BL6NJ_P0050419 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050420.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71745381 71935524 + MGP_C57BL6NJ_P0050420 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050421.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71745520 71908246 + MGP_C57BL6NJ_P0050421 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050422.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71745642 71903101 + MGP_C57BL6NJ_P0050422 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050423.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71766497 71935533 + MGP_C57BL6NJ_P0050423 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050424.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71766736 71893623 + MGP_C57BL6NJ_P0050424 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050425.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71766784 71935477 + MGP_C57BL6NJ_P0050425 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050426.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71766794 71935556 + MGP_C57BL6NJ_P0050426 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050427.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71766839 71887558 + MGP_C57BL6NJ_P0050427 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050428.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768178 71893583 + MGP_C57BL6NJ_P0050428 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050429.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768316 71935401 + MGP_C57BL6NJ_P0050429 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050430.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768519 71908445 + MGP_C57BL6NJ_P0050430 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050431.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768542 71771364 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050432.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768556 71814347 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050433.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71768879 71935539 + MGP_C57BL6NJ_P0050433 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050434.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71769019 71887520 + MGP_C57BL6NJ_P0050434 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050435.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71769199 71884339 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050436.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71812666 71901857 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050437.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71812994 71887599 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050438.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71842571 71935724 + MGP_C57BL6NJ_P0050438 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050439.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71842955 71908393 + MGP_C57BL6NJ_P0050439 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050440.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71842996 71926214 + MGP_C57BL6NJ_P0050440 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050441.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843002 71935002 + MGP_C57BL6NJ_P0050441 Tcf4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050442.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843009 71936807 + MGP_C57BL6NJ_P0050442 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050443.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843010 71847029 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050444.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843010 71884429 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050445.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843027 71908362 + Tcf4 protein_coding processed_transcript MGP_C57BL6NJ_T0050446.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843166 71901881 + MGP_C57BL6NJ_P0050446 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050447.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71843765 71908260 + MGP_C57BL6NJ_P0050447 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050448.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71849119 71903048 + MGP_C57BL6NJ_P0050448 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050449.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71861892 71935477 + MGP_C57BL6NJ_P0050449 Tcf4 protein_coding protein_coding MGP_C57BL6NJ_T0050450.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71907188 71910786 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050451.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71930182 71936807 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0050452.1 MGP_C57BL6NJ_G0024951.1 mouse_genomes_project 18 71934658 71935912 + Tcf4 protein_coding retained_intron MGP_C57BL6NJ_T0099056.1 MGP_C57BL6NJ_G0037120.1 mouse_genomes_project 18 65238246 65238366 + Gm22560 rRNA rRNA MGP_C57BL6NJ_T0049634.1 MGP_C57BL6NJ_G0024643.1 mouse_genomes_project 18 33187979 33417991 - MGP_C57BL6NJ_P0049634 Epb41l4a protein_coding protein_coding MGP_C57BL6NJ_T0050252.1 MGP_C57BL6NJ_G0024893.1 mouse_genomes_project 18 63046160 63093866 - MGP_C57BL6NJ_P0050252 Arhgef37 protein_coding protein_coding MGP_C57BL6NJ_T0100115.1 MGP_C57BL6NJ_G0038161.1 mouse_genomes_project 18 19332919 19333065 - Gm24959 snRNA snRNA MGP_C57BL6NJ_T0013676.1 MGP_C57BL6NJ_G0011721.1 mouse_genomes_project 18 65275287 65276762 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049830.1 MGP_C57BL6NJ_G0024712.1 mouse_genomes_project 18 36669228 36867648 + MGP_C57BL6NJ_P0049830 Pcdha9 protein_coding protein_coding MGP_C57BL6NJ_T0050001.1 MGP_C57BL6NJ_G0024791.1 mouse_genomes_project 18 42691970 42693603 - MGP_C57BL6NJ_P0050001 Gpr151 protein_coding protein_coding MGP_C57BL6NJ_T0049598.1 MGP_C57BL6NJ_G0024620.1 mouse_genomes_project 18 30741250 30774976 - MGP_C57BL6NJ_P0049598 Slc25a46 protein_coding protein_coding MGP_C57BL6NJ_T0049574.1 MGP_C57BL6NJ_G0024612.1 mouse_genomes_project 18 23411897 23412206 - MGP_C57BL6NJ_P0049574 Gm9955 protein_coding protein_coding MGP_C57BL6NJ_T0050107.1 MGP_C57BL6NJ_G0024833.1 mouse_genomes_project 18 50791886 50871693 + MGP_C57BL6NJ_P0050107 Hsd17b4 protein_coding protein_coding MGP_C57BL6NJ_T0050108.1 MGP_C57BL6NJ_G0024833.1 mouse_genomes_project 18 50792179 50808707 + Hsd17b4 protein_coding processed_transcript MGP_C57BL6NJ_T0050109.1 MGP_C57BL6NJ_G0024833.1 mouse_genomes_project 18 50808463 50812686 + Hsd17b4 protein_coding retained_intron MGP_C57BL6NJ_T0050110.1 MGP_C57BL6NJ_G0024833.1 mouse_genomes_project 18 50866747 50871396 + Hsd17b4 protein_coding retained_intron MGP_C57BL6NJ_T0049984.1 MGP_C57BL6NJ_G0024779.1 mouse_genomes_project 18 40091819 40110557 - MGP_C57BL6NJ_P0049984 Yipf5 protein_coding protein_coding MGP_C57BL6NJ_T0049578.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899963 24197644 + MGP_C57BL6NJ_P0049578 AW554918 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049579.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899974 24201235 + MGP_C57BL6NJ_P0049579 AW554918 protein_coding protein_coding MGP_C57BL6NJ_T0049580.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899978 23920755 + AW554918 protein_coding processed_transcript MGP_C57BL6NJ_T0049581.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899984 24017864 + AW554918 protein_coding processed_transcript MGP_C57BL6NJ_T0049582.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899984 24201240 + MGP_C57BL6NJ_P0049582 AW554918 protein_coding protein_coding MGP_C57BL6NJ_T0049583.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899984 24201240 + MGP_C57BL6NJ_P0049583 AW554918 protein_coding protein_coding MGP_C57BL6NJ_T0049584.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23899987 24197815 + MGP_C57BL6NJ_P0049584 AW554918 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049585.1 MGP_C57BL6NJ_G0024615.1 mouse_genomes_project 18 23965172 24198011 + MGP_C57BL6NJ_P0049585 AW554918 protein_coding protein_coding MGP_C57BL6NJ_T0101404.1 MGP_C57BL6NJ_G0039450.1 mouse_genomes_project 18 31882103 31882240 - Gm25826 snoRNA snoRNA MGP_C57BL6NJ_T0003960.1 MGP_C57BL6NJ_G0003547.1 mouse_genomes_project 18 36852116 36852555 - Gm38097 antisense antisense MGP_C57BL6NJ_T0003945.1 MGP_C57BL6NJ_G0003536.1 mouse_genomes_project 18 3601316 3608593 + Gm28529 antisense antisense MGP_C57BL6NJ_T0003946.1 MGP_C57BL6NJ_G0003536.1 mouse_genomes_project 18 3601328 3602298 + Gm28529 antisense antisense MGP_C57BL6NJ_T0003958.1 MGP_C57BL6NJ_G0003545.1 mouse_genomes_project 18 36611094 36611510 - Gm38225 antisense antisense MGP_C57BL6NJ_T0050541.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79702331 79743574 + MGP_C57BL6NJ_P0050541 Hdhd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050543.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716352 79734288 + MGP_C57BL6NJ_P0050543 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050544.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716352 79744296 + MGP_C57BL6NJ_P0050544 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050545.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716363 79743574 + MGP_C57BL6NJ_P0050545 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050546.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716363 79734288 + MGP_C57BL6NJ_P0050546 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050547.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716388 79729124 + MGP_C57BL6NJ_P0050547 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050548.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716621 79727286 + MGP_C57BL6NJ_P0050548 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050549.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716621 79745027 + MGP_C57BL6NJ_P0050549 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050550.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716655 79744296 + MGP_C57BL6NJ_P0050550 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0050551.1 MGP_C57BL6NJ_G0024983.1 mouse_genomes_project 18 79716674 79745027 + MGP_C57BL6NJ_P0050551 Hdhd2 protein_coding protein_coding MGP_C57BL6NJ_T0003967.1 MGP_C57BL6NJ_G0003554.1 mouse_genomes_project 18 39082657 39139063 - Gm15336 antisense antisense MGP_C57BL6NJ_T0050131.1 MGP_C57BL6NJ_G0024846.1 mouse_genomes_project 18 54159832 54323183 + MGP_C57BL6NJ_P0050131 Snx24 protein_coding protein_coding MGP_C57BL6NJ_T0050132.1 MGP_C57BL6NJ_G0024846.1 mouse_genomes_project 18 54159939 54323183 + MGP_C57BL6NJ_P0050132 Snx24 protein_coding protein_coding MGP_C57BL6NJ_T0003976.1 MGP_C57BL6NJ_G0003561.1 mouse_genomes_project 18 63300388 63302253 + antisense antisense MGP_C57BL6NJ_T0049824.1 MGP_C57BL6NJ_G0024706.1 mouse_genomes_project 18 36619212 36867648 + MGP_C57BL6NJ_P0049824 Pcdha5 protein_coding protein_coding MGP_C57BL6NJ_T0049998.1 MGP_C57BL6NJ_G0024789.1 mouse_genomes_project 18 42491159 42493866 + MGP_C57BL6NJ_P0049998 Pou4f3 protein_coding protein_coding MGP_C57BL6NJ_T0049551.1 MGP_C57BL6NJ_G0024601.1 mouse_genomes_project 18 22603924 22613908 + MGP_C57BL6NJ_P0049551 Zfp397 protein_coding protein_coding MGP_C57BL6NJ_T0101428.1 MGP_C57BL6NJ_G0039474.1 mouse_genomes_project 18 94237712 94237841 + Gm25418 snoRNA snoRNA MGP_C57BL6NJ_T0010467.1 MGP_C57BL6NJ_G0008552.1 mouse_genomes_project 18 37697960 37698075 - Mir6981 miRNA miRNA MGP_C57BL6NJ_T0050221.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62306193 62345408 - MGP_C57BL6NJ_P0050221 Tcof1 protein_coding protein_coding MGP_C57BL6NJ_T0050222.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62306193 62345366 - MGP_C57BL6NJ_P0050222 Tcof1 protein_coding protein_coding MGP_C57BL6NJ_T0050223.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62308435 62345396 - MGP_C57BL6NJ_P0050223 Tcof1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050224.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62310475 62345355 - MGP_C57BL6NJ_P0050224 Tcof1 protein_coding protein_coding MGP_C57BL6NJ_T0050225.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62320514 62321475 - Tcof1 protein_coding retained_intron MGP_C57BL6NJ_T0050226.1 MGP_C57BL6NJ_G0024882.1 mouse_genomes_project 18 62332026 62344883 - MGP_C57BL6NJ_P0050226 Tcof1 protein_coding protein_coding MGP_C57BL6NJ_T0001138.1 MGP_C57BL6NJ_G0001044.1 mouse_genomes_project 18 46561940 46562651 + TEC TEC MGP_C57BL6NJ_T0049858.1 MGP_C57BL6NJ_G0024735.1 mouse_genomes_project 18 37184851 37189892 + MGP_C57BL6NJ_P0049858 Pcdhb18 protein_coding protein_coding MGP_C57BL6NJ_T0049736.1 MGP_C57BL6NJ_G0024674.1 mouse_genomes_project 18 35218832 35252527 - MGP_C57BL6NJ_P0049736 Dnajc18 protein_coding protein_coding MGP_C57BL6NJ_T0049955.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38657746 38742595 - MGP_C57BL6NJ_P0049955 Fgf1 protein_coding protein_coding MGP_C57BL6NJ_T0049956.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38657748 38754420 - MGP_C57BL6NJ_P0049956 Fgf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049957.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38659250 38688838 - MGP_C57BL6NJ_P0049957 Fgf1 protein_coding protein_coding MGP_C57BL6NJ_T0049958.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38660979 38680839 - MGP_C57BL6NJ_P0049958 Fgf1 protein_coding protein_coding MGP_C57BL6NJ_T0049959.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38667591 38688223 - MGP_C57BL6NJ_P0049959 Fgf1 protein_coding protein_coding MGP_C57BL6NJ_T0049960.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38667632 38680952 - Fgf1 protein_coding retained_intron MGP_C57BL6NJ_T0049961.1 MGP_C57BL6NJ_G0024776.1 mouse_genomes_project 18 38680658 38754173 - MGP_C57BL6NJ_P0049961 Fgf1 protein_coding protein_coding MGP_C57BL6NJ_T0049382.1 MGP_C57BL6NJ_G0024542.1 mouse_genomes_project 18 4509769 4821910 - MGP_C57BL6NJ_P0049382 Mpp7 protein_coding protein_coding MGP_C57BL6NJ_T0049383.1 MGP_C57BL6NJ_G0024542.1 mouse_genomes_project 18 4511708 4746270 - MGP_C57BL6NJ_P0049383 Mpp7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007211.1 MGP_C57BL6NJ_G0005925.1 mouse_genomes_project 18 65124816 65149490 + Gm26972 lincRNA lincRNA MGP_C57BL6NJ_T0049876.1 MGP_C57BL6NJ_G0024748.1 mouse_genomes_project 18 37394499 37559702 + MGP_C57BL6NJ_P0049876 Pcdhga5 protein_coding protein_coding MGP_C57BL6NJ_T0050572.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80287575 80395781 - MGP_C57BL6NJ_P0050572 Rnf165 protein_coding protein_coding MGP_C57BL6NJ_T0050573.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80288136 80293151 - Rnf165 protein_coding retained_intron MGP_C57BL6NJ_T0050574.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80292739 80395729 - MGP_C57BL6NJ_P0050574 Rnf165 protein_coding protein_coding MGP_C57BL6NJ_T0050575.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80294323 80332043 - Rnf165 protein_coding processed_transcript MGP_C57BL6NJ_T0050576.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80392771 80395288 - Rnf165 protein_coding retained_intron MGP_C57BL6NJ_T0050577.1 MGP_C57BL6NJ_G0024989.1 mouse_genomes_project 18 80393810 80395784 - MGP_C57BL6NJ_P0050577 Rnf165 protein_coding protein_coding MGP_C57BL6NJ_T0049312.1 MGP_C57BL6NJ_G0024527.1 mouse_genomes_project 18 390300 398748 + MGP_C57BL6NJ_P0049312 Bambi protein_coding protein_coding MGP_C57BL6NJ_T0049755.1 MGP_C57BL6NJ_G0024681.1 mouse_genomes_project 18 35608235 35798444 - MGP_C57BL6NJ_P0049755 Nrg2 protein_coding protein_coding MGP_C57BL6NJ_T0049756.1 MGP_C57BL6NJ_G0024681.1 mouse_genomes_project 18 35608235 35798444 - MGP_C57BL6NJ_P0049756 Nrg2 protein_coding protein_coding MGP_C57BL6NJ_T0049757.1 MGP_C57BL6NJ_G0024681.1 mouse_genomes_project 18 35608321 35647579 - MGP_C57BL6NJ_P0049757 Nrg2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049758.1 MGP_C57BL6NJ_G0024681.1 mouse_genomes_project 18 35619267 35798296 - MGP_C57BL6NJ_P0049758 Nrg2 protein_coding protein_coding MGP_C57BL6NJ_T0101410.1 MGP_C57BL6NJ_G0039456.1 mouse_genomes_project 18 35092885 35093081 + Snora74a snoRNA snoRNA MGP_C57BL6NJ_T0007220.1 MGP_C57BL6NJ_G0005934.1 mouse_genomes_project 18 86013305 86029981 + 4930445N18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007221.1 MGP_C57BL6NJ_G0005934.1 mouse_genomes_project 18 86013308 86016574 + 4930445N18Rik lincRNA lincRNA MGP_C57BL6NJ_T0101421.1 MGP_C57BL6NJ_G0039467.1 mouse_genomes_project 18 77655418 77655484 + Snord58b snoRNA snoRNA MGP_C57BL6NJ_T0050067.1 MGP_C57BL6NJ_G0024822.1 mouse_genomes_project 18 47129778 47146591 - MGP_C57BL6NJ_P0050067 Cdo1 protein_coding protein_coding MGP_C57BL6NJ_T0050228.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62429930 62495897 + MGP_C57BL6NJ_P0050228 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0050229.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62429944 62447535 + Camk2a protein_coding retained_intron MGP_C57BL6NJ_T0050230.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62429944 62494152 + MGP_C57BL6NJ_P0050230 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0050231.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62430037 62447553 + MGP_C57BL6NJ_P0050231 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0050232.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62431261 62459775 + MGP_C57BL6NJ_P0050232 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0050233.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62467537 62492608 + MGP_C57BL6NJ_P0050233 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0050234.1 MGP_C57BL6NJ_G0024884.1 mouse_genomes_project 18 62467583 62493442 + MGP_C57BL6NJ_P0050234 Camk2a protein_coding protein_coding MGP_C57BL6NJ_T0007182.1 MGP_C57BL6NJ_G0005904.1 mouse_genomes_project 18 31046539 31050390 - Gm26823 lincRNA lincRNA MGP_C57BL6NJ_T0011709.1 MGP_C57BL6NJ_G0009794.1 mouse_genomes_project 18 15188814 15189046 - Gm24015 misc_RNA misc_RNA MGP_C57BL6NJ_T0099057.1 MGP_C57BL6NJ_G0037121.1 mouse_genomes_project 18 71388711 71388845 - Gm23536 rRNA rRNA MGP_C57BL6NJ_T0049400.1 MGP_C57BL6NJ_G0024546.1 mouse_genomes_project 18 6620842 6758872 - MGP_C57BL6NJ_P0049400 Ccny protein_coding protein_coding MGP_C57BL6NJ_T0050673.1 MGP_C57BL6NJ_G0025020.1 mouse_genomes_project 18 87965510 87982976 - MGP_C57BL6NJ_P0050673 Cndp2 protein_coding protein_coding MGP_C57BL6NJ_T0050674.1 MGP_C57BL6NJ_G0025020.1 mouse_genomes_project 18 87965510 87979340 - MGP_C57BL6NJ_P0050674 Cndp2 protein_coding protein_coding MGP_C57BL6NJ_T0049483.1 MGP_C57BL6NJ_G0024570.1 mouse_genomes_project 18 10693829 10716127 + MGP_C57BL6NJ_P0049483 Impact protein_coding protein_coding MGP_C57BL6NJ_T0003963.1 MGP_C57BL6NJ_G0003550.1 mouse_genomes_project 18 37416999 37428781 - Gm37165 antisense antisense MGP_C57BL6NJ_T0007217.1 MGP_C57BL6NJ_G0005931.1 mouse_genomes_project 18 80583596 80587386 - A330094K24Rik lincRNA lincRNA MGP_C57BL6NJ_T0050084.1 MGP_C57BL6NJ_G0024829.1 mouse_genomes_project 18 48558731 48561429 + MGP_C57BL6NJ_P0050084 protein_coding protein_coding MGP_C57BL6NJ_T0001135.1 MGP_C57BL6NJ_G0001041.1 mouse_genomes_project 18 35110759 35112919 + TEC TEC MGP_C57BL6NJ_T0050498.1 MGP_C57BL6NJ_G0024967.1 mouse_genomes_project 18 76776676 76791029 - MGP_C57BL6NJ_P0050498 Ska1 protein_coding protein_coding MGP_C57BL6NJ_T0050499.1 MGP_C57BL6NJ_G0024967.1 mouse_genomes_project 18 76776676 76791029 - MGP_C57BL6NJ_P0050499 Ska1 protein_coding protein_coding MGP_C57BL6NJ_T0003970.1 MGP_C57BL6NJ_G0003557.1 mouse_genomes_project 18 44903689 44918296 + A930012L18Rik antisense antisense MGP_C57BL6NJ_T0003971.1 MGP_C57BL6NJ_G0003557.1 mouse_genomes_project 18 44904127 44914501 + A930012L18Rik antisense antisense MGP_C57BL6NJ_T0010484.1 MGP_C57BL6NJ_G0008569.1 mouse_genomes_project 18 62944135 62944201 - Mir378a miRNA miRNA MGP_C57BL6NJ_T0050394.1 MGP_C57BL6NJ_G0024949.1 mouse_genomes_project 18 70566299 70583000 - MGP_C57BL6NJ_P0050394 Mc2r protein_coding protein_coding MGP_C57BL6NJ_T0050271.1 MGP_C57BL6NJ_G0024900.1 mouse_genomes_project 18 63554669 63620091 + MGP_C57BL6NJ_P0050271 Sh3tc2 protein_coding protein_coding MGP_C57BL6NJ_T0050017.1 MGP_C57BL6NJ_G0024797.1 mouse_genomes_project 18 43723739 43896427 - MGP_C57BL6NJ_P0050017 Jakmip2 protein_coding protein_coding MGP_C57BL6NJ_T0049749.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35553477 35605241 + MGP_C57BL6NJ_P0049749 Psd2 protein_coding protein_coding MGP_C57BL6NJ_T0049750.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35553712 35605241 + MGP_C57BL6NJ_P0049750 Psd2 protein_coding protein_coding MGP_C57BL6NJ_T0049751.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35553714 35605244 + MGP_C57BL6NJ_P0049751 Psd2 protein_coding protein_coding MGP_C57BL6NJ_T0049752.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35553749 35605109 + MGP_C57BL6NJ_P0049752 Psd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049753.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35553752 35605203 + MGP_C57BL6NJ_P0049753 Psd2 protein_coding protein_coding MGP_C57BL6NJ_T0049754.1 MGP_C57BL6NJ_G0024680.1 mouse_genomes_project 18 35576527 35596615 + Psd2 protein_coding retained_intron MGP_C57BL6NJ_T0049573.1 MGP_C57BL6NJ_G0024611.1 mouse_genomes_project 18 23353588 23404371 + MGP_C57BL6NJ_P0049573 Mocos protein_coding protein_coding MGP_C57BL6NJ_T0050320.1 MGP_C57BL6NJ_G0024921.1 mouse_genomes_project 18 67319112 67368314 + MGP_C57BL6NJ_P0050320 Malt1 protein_coding protein_coding MGP_C57BL6NJ_T0049852.1 MGP_C57BL6NJ_G0024729.1 mouse_genomes_project 18 37128464 37131604 + MGP_C57BL6NJ_P0049852 Pcdhb12 protein_coding protein_coding MGP_C57BL6NJ_T0049686.1 MGP_C57BL6NJ_G0024660.1 mouse_genomes_project 18 34348417 34355292 + MGP_C57BL6NJ_P0049686 Reep2 protein_coding protein_coding MGP_C57BL6NJ_T0050177.1 MGP_C57BL6NJ_G0024866.1 mouse_genomes_project 18 60009881 60031222 + MGP_C57BL6NJ_P0050177 Isoc1 protein_coding protein_coding MGP_C57BL6NJ_T0007170.1 MGP_C57BL6NJ_G0005896.1 mouse_genomes_project 18 2169747 2172599 - Gm26682 lincRNA lincRNA MGP_C57BL6NJ_T0049425.1 MGP_C57BL6NJ_G0024556.1 mouse_genomes_project 18 8038037 8052412 - MGP_C57BL6NJ_P0049425 Abhd3 protein_coding protein_coding MGP_C57BL6NJ_T0049426.1 MGP_C57BL6NJ_G0024556.1 mouse_genomes_project 18 8038681 8100950 - MGP_C57BL6NJ_P0049426 Abhd3 protein_coding protein_coding MGP_C57BL6NJ_T0049566.1 MGP_C57BL6NJ_G0024607.1 mouse_genomes_project 18 23163730 23170622 + MGP_C57BL6NJ_P0049566 2700062C07Rik protein_coding protein_coding MGP_C57BL6NJ_T0049933.1 MGP_C57BL6NJ_G0024767.1 mouse_genomes_project 18 37695250 37724332 - MGP_C57BL6NJ_P0049933 Arap3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049515.1 MGP_C57BL6NJ_G0024589.1 mouse_genomes_project 18 19150395 19213433 - MGP_C57BL6NJ_P0049515 B4galt6 protein_coding protein_coding MGP_C57BL6NJ_T0011714.1 MGP_C57BL6NJ_G0009799.1 mouse_genomes_project 18 31517257 31517565 + Gm22325 misc_RNA misc_RNA MGP_C57BL6NJ_T0049554.1 MGP_C57BL6NJ_G0024604.1 mouse_genomes_project 18 22659441 22670550 - MGP_C57BL6NJ_P0049554 Zfp24 protein_coding protein_coding MGP_C57BL6NJ_T0049555.1 MGP_C57BL6NJ_G0024604.1 mouse_genomes_project 18 22663664 22670060 - MGP_C57BL6NJ_P0049555 Zfp24 protein_coding protein_coding MGP_C57BL6NJ_T0049556.1 MGP_C57BL6NJ_G0024604.1 mouse_genomes_project 18 22667710 22670110 - MGP_C57BL6NJ_P0049556 Zfp24 protein_coding protein_coding MGP_C57BL6NJ_T0050588.1 MGP_C57BL6NJ_G0024996.1 mouse_genomes_project 18 80961634 80984963 - MGP_C57BL6NJ_P0050588 Slc14a1 protein_coding protein_coding MGP_C57BL6NJ_T0050589.1 MGP_C57BL6NJ_G0024996.1 mouse_genomes_project 18 80963192 81004664 - MGP_C57BL6NJ_P0050589 Slc14a1 protein_coding protein_coding MGP_C57BL6NJ_T0050590.1 MGP_C57BL6NJ_G0024996.1 mouse_genomes_project 18 80963192 80984868 - MGP_C57BL6NJ_P0050590 Slc14a1 protein_coding protein_coding MGP_C57BL6NJ_T0013657.1 MGP_C57BL6NJ_G0011702.1 mouse_genomes_project 18 38526613 38526727 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050679.1 MGP_C57BL6NJ_G0025022.1 mouse_genomes_project 18 88174266 88204848 + MGP_C57BL6NJ_P0050679 Cyb5a protein_coding protein_coding MGP_C57BL6NJ_T0050680.1 MGP_C57BL6NJ_G0025022.1 mouse_genomes_project 18 88174305 88204039 + MGP_C57BL6NJ_P0050680 Cyb5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050681.1 MGP_C57BL6NJ_G0025022.1 mouse_genomes_project 18 88174335 88198029 + Cyb5a protein_coding retained_intron MGP_C57BL6NJ_T0050682.1 MGP_C57BL6NJ_G0025022.1 mouse_genomes_project 18 88174807 88204309 + MGP_C57BL6NJ_P0050682 Cyb5a protein_coding protein_coding MGP_C57BL6NJ_T0050683.1 MGP_C57BL6NJ_G0025022.1 mouse_genomes_project 18 88202047 88204311 + Cyb5a protein_coding retained_intron MGP_C57BL6NJ_T0050015.1 MGP_C57BL6NJ_G0024795.1 mouse_genomes_project 18 43663622 43665932 + MGP_C57BL6NJ_P0050015 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0011721.1 MGP_C57BL6NJ_G0009806.1 mouse_genomes_project 18 43972014 43972327 + Gm23894 misc_RNA misc_RNA MGP_C57BL6NJ_T0050074.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47707776 47753335 - MGP_C57BL6NJ_P0050074 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050075.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47717389 47842768 - MGP_C57BL6NJ_P0050075 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050076.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47717390 47842806 - MGP_C57BL6NJ_P0050076 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050077.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47719573 47842384 - MGP_C57BL6NJ_P0050077 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050078.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47719575 47842386 - MGP_C57BL6NJ_P0050078 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050079.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47720518 47807379 - MGP_C57BL6NJ_P0050079 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050080.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47747783 47842806 - Sema6a protein_coding retained_intron MGP_C57BL6NJ_T0050081.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47747798 47842808 - Sema6a protein_coding retained_intron MGP_C57BL6NJ_T0050082.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47762675 47807357 - MGP_C57BL6NJ_P0050082 Sema6a protein_coding protein_coding MGP_C57BL6NJ_T0050083.1 MGP_C57BL6NJ_G0024828.1 mouse_genomes_project 18 47774455 47842206 - Sema6a protein_coding retained_intron MGP_C57BL6NJ_T0007212.1 MGP_C57BL6NJ_G0005926.1 mouse_genomes_project 18 67877837 67880747 + Raxos1 lincRNA lincRNA MGP_C57BL6NJ_T0049827.1 MGP_C57BL6NJ_G0024709.1 mouse_genomes_project 18 36640389 36867648 + MGP_C57BL6NJ_P0049827 Pcdha7 protein_coding protein_coding MGP_C57BL6NJ_T0101413.1 MGP_C57BL6NJ_G0039459.1 mouse_genomes_project 18 47441104 47441249 - Gm22791 snoRNA snoRNA MGP_C57BL6NJ_T0050659.1 MGP_C57BL6NJ_G0025015.1 mouse_genomes_project 18 86072757 86170039 + MGP_C57BL6NJ_P0050659 Zfp516 protein_coding protein_coding MGP_C57BL6NJ_T0050660.1 MGP_C57BL6NJ_G0025015.1 mouse_genomes_project 18 86076449 86170039 + MGP_C57BL6NJ_P0050660 Zfp516 protein_coding protein_coding MGP_C57BL6NJ_T0013645.1 MGP_C57BL6NJ_G0011690.1 mouse_genomes_project 18 24573612 24574393 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018069.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2510073 2631961 - Gm10125 processed_transcript antisense MGP_C57BL6NJ_T0018070.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2557665 2560350 - Gm10125 processed_transcript retained_intron MGP_C57BL6NJ_T0018071.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2564533 2631961 - Gm10125 processed_transcript processed_transcript MGP_C57BL6NJ_T0018072.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2564605 2631759 - Gm10125 processed_transcript antisense MGP_C57BL6NJ_T0018073.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2605084 2631950 - Gm10125 processed_transcript antisense MGP_C57BL6NJ_T0018074.1 MGP_C57BL6NJ_G0015750.1 mouse_genomes_project 18 2605084 2633073 - Gm10125 processed_transcript antisense MGP_C57BL6NJ_T0003944.1 MGP_C57BL6NJ_G0003535.1 mouse_genomes_project 18 3302115 3315507 + Gm17036 antisense antisense MGP_C57BL6NJ_T0050670.1 MGP_C57BL6NJ_G0025019.1 mouse_genomes_project 18 87905227 87946532 - MGP_C57BL6NJ_P0050670 Cndp1 protein_coding protein_coding MGP_C57BL6NJ_T0050671.1 MGP_C57BL6NJ_G0025019.1 mouse_genomes_project 18 87923213 87946494 - Cndp1 protein_coding retained_intron MGP_C57BL6NJ_T0050672.1 MGP_C57BL6NJ_G0025019.1 mouse_genomes_project 18 87925369 87946394 - Cndp1 protein_coding retained_intron MGP_C57BL6NJ_T0011718.1 MGP_C57BL6NJ_G0009803.1 mouse_genomes_project 18 40730784 40731089 - Gm22515 misc_RNA misc_RNA MGP_C57BL6NJ_T0050497.1 MGP_C57BL6NJ_G0024966.1 mouse_genomes_project 18 76631230 76631713 + MGP_C57BL6NJ_P0050497 Gm9925 protein_coding protein_coding MGP_C57BL6NJ_T0049321.1 MGP_C57BL6NJ_G0024531.1 mouse_genomes_project 18 1609249 1652441 + MGP_C57BL6NJ_P0049321 9430020K01Rik protein_coding protein_coding MGP_C57BL6NJ_T0050195.1 MGP_C57BL6NJ_G0024876.1 mouse_genomes_project 18 62034156 62046269 + MGP_C57BL6NJ_P0050195 Rbm22 protein_coding protein_coding MGP_C57BL6NJ_T0050196.1 MGP_C57BL6NJ_G0024876.1 mouse_genomes_project 18 62034184 62034907 + Rbm22 protein_coding retained_intron MGP_C57BL6NJ_T0050197.1 MGP_C57BL6NJ_G0024876.1 mouse_genomes_project 18 62034188 62043767 + Rbm22 protein_coding retained_intron MGP_C57BL6NJ_T0050198.1 MGP_C57BL6NJ_G0024876.1 mouse_genomes_project 18 62043874 62044599 + Rbm22 protein_coding retained_intron MGP_C57BL6NJ_T0050199.1 MGP_C57BL6NJ_G0024876.1 mouse_genomes_project 18 62044057 62045451 + Rbm22 protein_coding retained_intron MGP_C57BL6NJ_T0100114.1 MGP_C57BL6NJ_G0038160.1 mouse_genomes_project 18 12506014 12509799 - Gm24924 snRNA snRNA MGP_C57BL6NJ_T0010461.1 MGP_C57BL6NJ_G0008546.1 mouse_genomes_project 18 32161930 32162031 - Mir6361 miRNA miRNA MGP_C57BL6NJ_T0050612.1 MGP_C57BL6NJ_G0025005.1 mouse_genomes_project 18 83219494 83239195 - MGP_C57BL6NJ_P0050612 Hsbp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0049985.1 MGP_C57BL6NJ_G0024780.1 mouse_genomes_project 18 40159727 40160450 + MGP_C57BL6NJ_P0049985 2900055J20Rik protein_coding protein_coding MGP_C57BL6NJ_T0049337.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2631427 2821665 + MGP_C57BL6NJ_P0049337 Zeb1 protein_coding protein_coding MGP_C57BL6NJ_T0049338.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2631439 2756114 + Zeb1 protein_coding retained_intron MGP_C57BL6NJ_T0049339.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2631458 2812746 + MGP_C57BL6NJ_P0049339 Zeb1 protein_coding protein_coding MGP_C57BL6NJ_T0049340.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2631458 2813129 + MGP_C57BL6NJ_P0049340 Zeb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049341.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2631479 2812783 + MGP_C57BL6NJ_P0049341 Zeb1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049342.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2632875 2682738 + Zeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0049343.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2633169 2804240 + MGP_C57BL6NJ_P0049343 Zeb1 protein_coding protein_coding MGP_C57BL6NJ_T0049344.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2633428 2804367 + Zeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0049345.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2633770 2813955 + Zeb1 protein_coding retained_intron MGP_C57BL6NJ_T0049346.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2643235 2684152 + Zeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0049347.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2674549 2821669 + MGP_C57BL6NJ_P0049347 Zeb1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049348.1 MGP_C57BL6NJ_G0024534.1 mouse_genomes_project 18 2796900 2819002 + Zeb1 protein_coding processed_transcript MGP_C57BL6NJ_T0049995.1 MGP_C57BL6NJ_G0024787.1 mouse_genomes_project 18 42278924 42344964 - MGP_C57BL6NJ_P0049995 Lars protein_coding protein_coding MGP_C57BL6NJ_T0049620.1 MGP_C57BL6NJ_G0024636.1 mouse_genomes_project 18 31780609 31815863 - MGP_C57BL6NJ_P0049620 Gypc protein_coding protein_coding MGP_C57BL6NJ_T0049621.1 MGP_C57BL6NJ_G0024636.1 mouse_genomes_project 18 31780612 31815809 - MGP_C57BL6NJ_P0049621 Gypc protein_coding protein_coding MGP_C57BL6NJ_T0049622.1 MGP_C57BL6NJ_G0024636.1 mouse_genomes_project 18 31782079 31789381 - MGP_C57BL6NJ_P0049622 Gypc protein_coding protein_coding MGP_C57BL6NJ_T0010478.1 MGP_C57BL6NJ_G0008563.1 mouse_genomes_project 18 61626988 61627098 + Gm23576 miRNA miRNA MGP_C57BL6NJ_T0049600.1 MGP_C57BL6NJ_G0024622.1 mouse_genomes_project 18 30805768 30899991 + MGP_C57BL6NJ_P0049600 Sap130 protein_coding protein_coding MGP_C57BL6NJ_T0049601.1 MGP_C57BL6NJ_G0024622.1 mouse_genomes_project 18 30811139 30899994 + MGP_C57BL6NJ_P0049601 Sap130 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050340.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67715517 67732823 + MGP_C57BL6NJ_P0050340 Sec11c protein_coding protein_coding MGP_C57BL6NJ_T0050341.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67715518 67732814 + MGP_C57BL6NJ_P0050341 Sec11c protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050342.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67715540 67727886 + MGP_C57BL6NJ_P0050342 Sec11c protein_coding protein_coding MGP_C57BL6NJ_T0050343.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67715571 67732815 + Sec11c protein_coding retained_intron MGP_C57BL6NJ_T0050344.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67716270 67727936 + Sec11c protein_coding processed_transcript MGP_C57BL6NJ_T0050345.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67721750 67732818 + Sec11c protein_coding processed_transcript MGP_C57BL6NJ_T0050346.1 MGP_C57BL6NJ_G0024924.1 mouse_genomes_project 18 67729171 67732818 + Sec11c protein_coding processed_transcript MGP_C57BL6NJ_T0013642.1 MGP_C57BL6NJ_G0011687.1 mouse_genomes_project 18 19594002 19594446 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049734.1 MGP_C57BL6NJ_G0024673.1 mouse_genomes_project 18 35198412 35206410 - MGP_C57BL6NJ_P0049734 Spata24 protein_coding protein_coding MGP_C57BL6NJ_T0049735.1 MGP_C57BL6NJ_G0024673.1 mouse_genomes_project 18 35204240 35206410 - MGP_C57BL6NJ_P0049735 Spata24 protein_coding protein_coding MGP_C57BL6NJ_T0049440.1 MGP_C57BL6NJ_G0024562.1 mouse_genomes_project 18 9766863 9795386 + MGP_C57BL6NJ_P0049440 Riok3 protein_coding protein_coding MGP_C57BL6NJ_T0100127.1 MGP_C57BL6NJ_G0038173.1 mouse_genomes_project 18 52990436 52990543 - Gm22259 snRNA snRNA MGP_C57BL6NJ_T0049828.1 MGP_C57BL6NJ_G0024710.1 mouse_genomes_project 18 36647004 37549446 + MGP_C57BL6NJ_P0049828 Gm37388 protein_coding protein_coding MGP_C57BL6NJ_T0101424.1 MGP_C57BL6NJ_G0039470.1 mouse_genomes_project 18 80520616 80520748 + Gm26014 snoRNA snoRNA MGP_C57BL6NJ_T0003968.1 MGP_C57BL6NJ_G0003555.1 mouse_genomes_project 18 39208265 39232287 - Gm15337 antisense antisense MGP_C57BL6NJ_T0049832.1 MGP_C57BL6NJ_G0024714.1 mouse_genomes_project 18 36684232 36840696 + protein_coding retained_intron MGP_C57BL6NJ_T0049833.1 MGP_C57BL6NJ_G0024714.1 mouse_genomes_project 18 36684270 36867648 + MGP_C57BL6NJ_P0049833 protein_coding protein_coding MGP_C57BL6NJ_T0049834.1 MGP_C57BL6NJ_G0024714.1 mouse_genomes_project 18 36684350 36867379 + MGP_C57BL6NJ_P0049834 protein_coding protein_coding MGP_C57BL6NJ_T0049609.1 MGP_C57BL6NJ_G0024629.1 mouse_genomes_project 18 31139882 31146522 - MGP_C57BL6NJ_P0049609 Gpr17 protein_coding protein_coding MGP_C57BL6NJ_T0050366.1 MGP_C57BL6NJ_G0024933.1 mouse_genomes_project 18 69285539 69310340 - MGP_C57BL6NJ_P0050366 Mppe1 protein_coding protein_coding MGP_C57BL6NJ_T0013684.1 MGP_C57BL6NJ_G0011729.1 mouse_genomes_project 18 93662558 93663518 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050501.1 MGP_C57BL6NJ_G0024969.1 mouse_genomes_project 18 76854182 76868596 + MGP_C57BL6NJ_P0050501 Mbd1 protein_coding protein_coding MGP_C57BL6NJ_T0050502.1 MGP_C57BL6NJ_G0024969.1 mouse_genomes_project 18 76854209 76864629 + MGP_C57BL6NJ_P0050502 Mbd1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049759.1 MGP_C57BL6NJ_G0024682.1 mouse_genomes_project 18 35884700 35905272 + MGP_C57BL6NJ_P0049759 Pura protein_coding protein_coding MGP_C57BL6NJ_T0049950.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38395869 38440073 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049951.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38395938 38606433 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049952.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38421486 38437081 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049953.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38473689 38592320 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049954.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38473689 38938597 + MGP_C57BL6NJ_P0049954 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049962.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38715474 38795815 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049963.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38715733 38758980 + MGP_C57BL6NJ_P0049963 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049964.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38780263 38795478 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049965.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38817439 38928207 + Arhgap26 protein_coding retained_intron MGP_C57BL6NJ_T0049966.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38817439 39219159 + MGP_C57BL6NJ_P0049966 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049967.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38817770 39212388 + MGP_C57BL6NJ_P0049967 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049968.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 38927368 38955260 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049969.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39060461 39215386 + MGP_C57BL6NJ_P0049969 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049970.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39123014 39219159 + MGP_C57BL6NJ_P0049970 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049971.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39127807 39143749 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0049972.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39133157 39212355 + MGP_C57BL6NJ_P0049972 Arhgap26 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049973.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39133157 39200912 + MGP_C57BL6NJ_P0049973 Arhgap26 protein_coding protein_coding MGP_C57BL6NJ_T0049974.1 MGP_C57BL6NJ_G0024775.1 mouse_genomes_project 18 39203810 39208284 + Arhgap26 protein_coding processed_transcript MGP_C57BL6NJ_T0100117.1 MGP_C57BL6NJ_G0038163.1 mouse_genomes_project 18 32093938 32094031 + Gm26378 snRNA snRNA MGP_C57BL6NJ_T0100132.1 MGP_C57BL6NJ_G0038178.1 mouse_genomes_project 18 65236520 65236583 + Gm23581 snRNA snRNA MGP_C57BL6NJ_T0013637.1 MGP_C57BL6NJ_G0011682.1 mouse_genomes_project 18 10434529 10435325 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050220.1 MGP_C57BL6NJ_G0024881.1 mouse_genomes_project 18 62262210 62303090 + MGP_C57BL6NJ_P0050220 Cd74 protein_coding protein_coding MGP_C57BL6NJ_T0100137.1 MGP_C57BL6NJ_G0038183.1 mouse_genomes_project 18 67827938 67827998 - Gm25150 snRNA snRNA MGP_C57BL6NJ_T0001142.1 MGP_C57BL6NJ_G0001048.1 mouse_genomes_project 18 63535943 63536188 - TEC TEC MGP_C57BL6NJ_T0050024.1 MGP_C57BL6NJ_G0024802.1 mouse_genomes_project 18 44261740 44266057 + MGP_C57BL6NJ_P0050024 Spink14 protein_coding protein_coding MGP_C57BL6NJ_T0050025.1 MGP_C57BL6NJ_G0024802.1 mouse_genomes_project 18 44262565 44266057 + MGP_C57BL6NJ_P0050025 Spink14 protein_coding protein_coding MGP_C57BL6NJ_T0013632.1 MGP_C57BL6NJ_G0011677.1 mouse_genomes_project 18 7072408 7073411 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050352.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67929091 67950697 - MGP_C57BL6NJ_P0050352 Lman1 protein_coding protein_coding MGP_C57BL6NJ_T0050353.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67931544 67950681 - MGP_C57BL6NJ_P0050353 Lman1 protein_coding protein_coding MGP_C57BL6NJ_T0050354.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67937093 67942956 - Lman1 protein_coding processed_transcript MGP_C57BL6NJ_T0050355.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67939218 67941728 - Lman1 protein_coding retained_intron MGP_C57BL6NJ_T0050356.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67941205 67972320 - MGP_C57BL6NJ_P0050356 Lman1 protein_coding protein_coding MGP_C57BL6NJ_T0050357.1 MGP_C57BL6NJ_G0024928.1 mouse_genomes_project 18 67941658 67969529 - Lman1 protein_coding processed_transcript MGP_C57BL6NJ_T0050685.1 MGP_C57BL6NJ_G0025024.1 mouse_genomes_project 18 88273078 88277309 - MGP_C57BL6NJ_P0050685 Timm21 protein_coding protein_coding MGP_C57BL6NJ_T0013649.1 MGP_C57BL6NJ_G0011694.1 mouse_genomes_project 18 34482010 34482238 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100139.1 MGP_C57BL6NJ_G0038185.1 mouse_genomes_project 18 81541265 81541425 + Gm23895 snRNA snRNA MGP_C57BL6NJ_T0050277.1 MGP_C57BL6NJ_G0024906.1 mouse_genomes_project 18 64240307 64390732 - MGP_C57BL6NJ_P0050277 Spink13 protein_coding protein_coding MGP_C57BL6NJ_T0018092.1 MGP_C57BL6NJ_G0015755.1 mouse_genomes_project 18 37950164 37970791 + 2010320O07Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0049790.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317442 36325023 + MGP_C57BL6NJ_P0049790 Slc35a4 protein_coding protein_coding MGP_C57BL6NJ_T0049791.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317806 36325015 + MGP_C57BL6NJ_P0049791 Slc35a4 protein_coding protein_coding MGP_C57BL6NJ_T0049792.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317810 36319930 + Slc35a4 protein_coding processed_transcript MGP_C57BL6NJ_T0049793.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317819 36319187 + Slc35a4 protein_coding processed_transcript MGP_C57BL6NJ_T0049794.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317819 36325020 + MGP_C57BL6NJ_P0049794 Slc35a4 protein_coding protein_coding MGP_C57BL6NJ_T0049795.1 MGP_C57BL6NJ_G0024690.1 mouse_genomes_project 18 36317836 36319953 + MGP_C57BL6NJ_P0049795 Slc35a4 protein_coding protein_coding MGP_C57BL6NJ_T0013664.1 MGP_C57BL6NJ_G0011709.1 mouse_genomes_project 18 46866971 46867547 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0003951.1 MGP_C57BL6NJ_G0003541.1 mouse_genomes_project 18 19041863 19129613 - Gm16090 antisense antisense MGP_C57BL6NJ_T0050059.1 MGP_C57BL6NJ_G0024818.1 mouse_genomes_project 18 46902598 46929702 - MGP_C57BL6NJ_P0050059 Fem1c protein_coding protein_coding MGP_C57BL6NJ_T0049532.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21295651 21650777 - MGP_C57BL6NJ_P0049532 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049533.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21295661 21464767 - MGP_C57BL6NJ_P0049533 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049534.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21295861 21647993 - MGP_C57BL6NJ_P0049534 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049535.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21296778 21464767 - MGP_C57BL6NJ_P0049535 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049536.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21297004 21649415 - MGP_C57BL6NJ_P0049536 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049537.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21435258 21442847 - Nol4 protein_coding processed_transcript MGP_C57BL6NJ_T0049538.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21523000 21648276 - MGP_C57BL6NJ_P0049538 Nol4 protein_coding protein_coding MGP_C57BL6NJ_T0049539.1 MGP_C57BL6NJ_G0024598.1 mouse_genomes_project 18 21532160 21564485 - Nol4 protein_coding processed_transcript MGP_C57BL6NJ_T0100112.1 MGP_C57BL6NJ_G0038158.1 mouse_genomes_project 18 9803848 9803967 + Gm25289 snRNA snRNA MGP_C57BL6NJ_T0049912.1 MGP_C57BL6NJ_G0024764.1 mouse_genomes_project 18 37657115 37666836 - Hdac3 protein_coding retained_intron MGP_C57BL6NJ_T0049913.1 MGP_C57BL6NJ_G0024764.1 mouse_genomes_project 18 37658243 37665347 - Hdac3 protein_coding retained_intron MGP_C57BL6NJ_T0049914.1 MGP_C57BL6NJ_G0024764.1 mouse_genomes_project 18 37658243 37677190 - MGP_C57BL6NJ_P0049914 Hdac3 protein_coding protein_coding MGP_C57BL6NJ_T0049915.1 MGP_C57BL6NJ_G0024764.1 mouse_genomes_project 18 37658249 37677133 - Hdac3 protein_coding processed_transcript MGP_C57BL6NJ_T0100142.1 MGP_C57BL6NJ_G0038188.1 mouse_genomes_project 18 86545790 86545956 - Gm24720 snRNA snRNA MGP_C57BL6NJ_T0050521.1 MGP_C57BL6NJ_G0024974.1 mouse_genomes_project 18 77654837 77657742 + MGP_C57BL6NJ_P0050521 Rpl17 protein_coding protein_coding MGP_C57BL6NJ_T0050466.1 MGP_C57BL6NJ_G0024957.1 mouse_genomes_project 18 72815829 72831402 - MGP_C57BL6NJ_P0050466 Poli protein_coding protein_coding MGP_C57BL6NJ_T0050467.1 MGP_C57BL6NJ_G0024957.1 mouse_genomes_project 18 72815832 72831884 - MGP_C57BL6NJ_P0050467 Poli protein_coding protein_coding MGP_C57BL6NJ_T0050468.1 MGP_C57BL6NJ_G0024957.1 mouse_genomes_project 18 72815833 72831698 - MGP_C57BL6NJ_P0050468 Poli protein_coding protein_coding MGP_C57BL6NJ_T0050469.1 MGP_C57BL6NJ_G0024957.1 mouse_genomes_project 18 72815834 72831402 - MGP_C57BL6NJ_P0050469 Poli protein_coding protein_coding MGP_C57BL6NJ_T0050470.1 MGP_C57BL6NJ_G0024957.1 mouse_genomes_project 18 72815836 72831532 - MGP_C57BL6NJ_P0050470 Poli protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049507.1 MGP_C57BL6NJ_G0024583.1 mouse_genomes_project 18 18409785 18444472 - MGP_C57BL6NJ_P0049507 Dsc1 protein_coding protein_coding MGP_C57BL6NJ_T0050026.1 MGP_C57BL6NJ_G0024803.1 mouse_genomes_project 18 44298450 44311110 + MGP_C57BL6NJ_P0050026 Spink6 protein_coding protein_coding MGP_C57BL6NJ_T0003965.1 MGP_C57BL6NJ_G0003552.1 mouse_genomes_project 18 37545157 37546350 - Gm29994 antisense antisense MGP_C57BL6NJ_T0050351.1 MGP_C57BL6NJ_G0024927.1 mouse_genomes_project 18 67899796 67917475 - MGP_C57BL6NJ_P0050351 Cplx4 protein_coding protein_coding MGP_C57BL6NJ_T0050379.1 MGP_C57BL6NJ_G0024943.1 mouse_genomes_project 18 69884963 69908792 + MGP_C57BL6NJ_P0050379 Seh1l protein_coding protein_coding MGP_C57BL6NJ_T0049849.1 MGP_C57BL6NJ_G0024726.1 mouse_genomes_project 18 37089720 37092897 + MGP_C57BL6NJ_P0049849 Pcdhb9 protein_coding protein_coding MGP_C57BL6NJ_T0049560.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22868219 22962572 + MGP_C57BL6NJ_P0049560 Galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0049561.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22868642 22962564 + MGP_C57BL6NJ_P0049561 Galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0049562.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22868834 22926388 + MGP_C57BL6NJ_P0049562 Galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0049563.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22899857 22962564 + MGP_C57BL6NJ_P0049563 Galnt1 protein_coding protein_coding MGP_C57BL6NJ_T0049564.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22906114 22940330 + MGP_C57BL6NJ_P0049564 Galnt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049565.1 MGP_C57BL6NJ_G0024606.1 mouse_genomes_project 18 22915608 22944332 + MGP_C57BL6NJ_P0049565 Galnt1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049923.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37679632 37682667 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0049924.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37679635 37691970 - MGP_C57BL6NJ_P0049924 Fchsd1 protein_coding protein_coding MGP_C57BL6NJ_T0049925.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37685159 37686257 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0049926.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37687853 37691965 - MGP_C57BL6NJ_P0049926 Fchsd1 protein_coding protein_coding MGP_C57BL6NJ_T0049927.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37687891 37689945 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0049928.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37689813 37690248 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0049929.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37689834 37691965 - MGP_C57BL6NJ_P0049929 Fchsd1 protein_coding protein_coding MGP_C57BL6NJ_T0049930.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37689835 37691953 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0049931.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37690000 37691965 - MGP_C57BL6NJ_P0049931 Fchsd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049932.1 MGP_C57BL6NJ_G0024766.1 mouse_genomes_project 18 37690028 37691724 - Fchsd1 protein_coding retained_intron MGP_C57BL6NJ_T0050698.1 MGP_C57BL6NJ_G0025030.1 mouse_genomes_project 18 92855605 92932451 + MGP_C57BL6NJ_P0050698 Cd226 protein_coding protein_coding MGP_C57BL6NJ_T0050699.1 MGP_C57BL6NJ_G0025030.1 mouse_genomes_project 18 92855672 92931411 + MGP_C57BL6NJ_P0050699 Cd226 protein_coding protein_coding MGP_C57BL6NJ_T0007193.1 MGP_C57BL6NJ_G0005913.1 mouse_genomes_project 18 37349518 37355810 + 3222401L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0007194.1 MGP_C57BL6NJ_G0005913.1 mouse_genomes_project 18 37349974 37352805 + 3222401L13Rik lincRNA lincRNA MGP_C57BL6NJ_T0049798.1 MGP_C57BL6NJ_G0024693.1 mouse_genomes_project 18 36381929 36390580 + MGP_C57BL6NJ_P0049798 Tmco6 protein_coding protein_coding MGP_C57BL6NJ_T0050508.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77040731 77230841 + MGP_C57BL6NJ_P0050508 Myo5b protein_coding protein_coding MGP_C57BL6NJ_T0050509.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77040759 77117980 + Myo5b protein_coding processed_transcript MGP_C57BL6NJ_T0050510.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77042332 77388892 + MGP_C57BL6NJ_P0050510 Myo5b protein_coding protein_coding MGP_C57BL6NJ_T0050511.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77042400 77275139 + Myo5b protein_coding processed_transcript MGP_C57BL6NJ_T0050512.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77042402 77388204 + MGP_C57BL6NJ_P0050512 Myo5b protein_coding protein_coding MGP_C57BL6NJ_T0050513.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77248102 77260089 + Myo5b protein_coding processed_transcript MGP_C57BL6NJ_T0050514.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77324677 77334251 + Myo5b protein_coding processed_transcript MGP_C57BL6NJ_T0050515.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77330794 77334244 + MGP_C57BL6NJ_P0050515 Myo5b protein_coding protein_coding MGP_C57BL6NJ_T0050516.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77331964 77334242 + Myo5b protein_coding retained_intron MGP_C57BL6NJ_T0050517.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77332753 77339631 + Myo5b protein_coding processed_transcript MGP_C57BL6NJ_T0050518.1 MGP_C57BL6NJ_G0024971.1 mouse_genomes_project 18 77350925 77388876 + Myo5b protein_coding retained_intron MGP_C57BL6NJ_T0010450.1 MGP_C57BL6NJ_G0008535.1 mouse_genomes_project 18 3601737 3601820 - Mir1893 miRNA miRNA MGP_C57BL6NJ_T0011711.1 MGP_C57BL6NJ_G0009796.1 mouse_genomes_project 18 19818360 19818470 + Gm24372 misc_RNA misc_RNA MGP_C57BL6NJ_T0007171.1 MGP_C57BL6NJ_G0005897.1 mouse_genomes_project 18 8101118 8106490 + 4930563E18Rik lincRNA lincRNA MGP_C57BL6NJ_T0100119.1 MGP_C57BL6NJ_G0038165.1 mouse_genomes_project 18 33436050 33436111 - Gm22788 snRNA snRNA MGP_C57BL6NJ_T0049320.1 MGP_C57BL6NJ_G0024530.1 mouse_genomes_project 18 1356967 1378706 + MGP_C57BL6NJ_P0049320 Mtpap protein_coding protein_coding MGP_C57BL6NJ_T0050523.1 MGP_C57BL6NJ_G0024976.1 mouse_genomes_project 18 77675715 77964911 + MGP_C57BL6NJ_P0050523 Dym protein_coding protein_coding MGP_C57BL6NJ_T0050030.1 MGP_C57BL6NJ_G0024806.1 mouse_genomes_project 18 44403417 44419944 - MGP_C57BL6NJ_P0050030 Spinkl protein_coding protein_coding MGP_C57BL6NJ_T0100134.1 MGP_C57BL6NJ_G0038180.1 mouse_genomes_project 18 65663108 65663183 - Gm24384 snRNA snRNA MGP_C57BL6NJ_T0049869.1 MGP_C57BL6NJ_G0024744.1 mouse_genomes_project 18 37372380 37559702 + MGP_C57BL6NJ_P0049869 Pcdhga3 protein_coding protein_coding MGP_C57BL6NJ_T0007215.1 MGP_C57BL6NJ_G0005929.1 mouse_genomes_project 18 78221518 78230603 + Gm10532 lincRNA lincRNA MGP_C57BL6NJ_T0001145.1 MGP_C57BL6NJ_G0001051.1 mouse_genomes_project 18 83369964 83373010 + TEC TEC MGP_C57BL6NJ_T0050072.1 MGP_C57BL6NJ_G0024826.1 mouse_genomes_project 18 47376004 47385568 + MGP_C57BL6NJ_P0050072 Arl14epl protein_coding protein_coding MGP_C57BL6NJ_T0049502.1 MGP_C57BL6NJ_G0024581.1 mouse_genomes_project 18 18279073 18321739 - MGP_C57BL6NJ_P0049502 Dsc3 protein_coding protein_coding MGP_C57BL6NJ_T0010471.1 MGP_C57BL6NJ_G0008556.1 mouse_genomes_project 18 43663256 43663330 - Gm27325 miRNA miRNA MGP_C57BL6NJ_T0049509.1 MGP_C57BL6NJ_G0024585.1 mouse_genomes_project 18 18866058 18907471 + MGP_C57BL6NJ_P0049509 Dsg4 protein_coding protein_coding MGP_C57BL6NJ_T0050278.1 MGP_C57BL6NJ_G0024907.1 mouse_genomes_project 18 64281784 64297713 + Spink10 protein_coding processed_transcript MGP_C57BL6NJ_T0050279.1 MGP_C57BL6NJ_G0024907.1 mouse_genomes_project 18 64284930 64300004 + MGP_C57BL6NJ_P0050279 Spink10 protein_coding protein_coding MGP_C57BL6NJ_T0050280.1 MGP_C57BL6NJ_G0024907.1 mouse_genomes_project 18 64287466 64289366 + Spink10 protein_coding processed_transcript MGP_C57BL6NJ_T0050281.1 MGP_C57BL6NJ_G0024907.1 mouse_genomes_project 18 64287520 64290487 + Spink10 protein_coding processed_transcript MGP_C57BL6NJ_T0050009.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43497530 43623951 - MGP_C57BL6NJ_P0050009 Dpysl3 protein_coding protein_coding MGP_C57BL6NJ_T0050010.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43499272 43500582 - Dpysl3 protein_coding processed_transcript MGP_C57BL6NJ_T0050011.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43500778 43547724 - MGP_C57BL6NJ_P0050011 Dpysl3 protein_coding protein_coding MGP_C57BL6NJ_T0050012.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43500839 43568640 - MGP_C57BL6NJ_P0050012 Dpysl3 protein_coding protein_coding MGP_C57BL6NJ_T0050013.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43508051 43520057 - MGP_C57BL6NJ_P0050013 Dpysl3 protein_coding protein_coding MGP_C57BL6NJ_T0050014.1 MGP_C57BL6NJ_G0024794.1 mouse_genomes_project 18 43511450 43519651 - MGP_C57BL6NJ_P0050014 Dpysl3 protein_coding protein_coding MGP_C57BL6NJ_T0050627.1 MGP_C57BL6NJ_G0025008.1 mouse_genomes_project 18 83419886 83482654 - MGP_C57BL6NJ_P0050627 Ctdp1 protein_coding protein_coding MGP_C57BL6NJ_T0050628.1 MGP_C57BL6NJ_G0025008.1 mouse_genomes_project 18 83419892 83452787 - MGP_C57BL6NJ_P0050628 Ctdp1 protein_coding protein_coding MGP_C57BL6NJ_T0050629.1 MGP_C57BL6NJ_G0025008.1 mouse_genomes_project 18 83420663 83452716 - Ctdp1 protein_coding processed_transcript MGP_C57BL6NJ_T0049516.1 MGP_C57BL6NJ_G0024590.1 mouse_genomes_project 18 19302566 19391016 - MGP_C57BL6NJ_P0049516 Trappc8 protein_coding protein_coding MGP_C57BL6NJ_T0049517.1 MGP_C57BL6NJ_G0024590.1 mouse_genomes_project 18 19304323 19391005 - MGP_C57BL6NJ_P0049517 Trappc8 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049518.1 MGP_C57BL6NJ_G0024590.1 mouse_genomes_project 18 19334617 19391016 - MGP_C57BL6NJ_P0049518 Trappc8 protein_coding protein_coding MGP_C57BL6NJ_T0050019.1 MGP_C57BL6NJ_G0024799.1 mouse_genomes_project 18 43974915 43978026 + MGP_C57BL6NJ_P0050019 Scgb3a2 protein_coding protein_coding MGP_C57BL6NJ_T0050020.1 MGP_C57BL6NJ_G0024799.1 mouse_genomes_project 18 43974953 43978026 + MGP_C57BL6NJ_P0050020 Scgb3a2 protein_coding protein_coding MGP_C57BL6NJ_T0050021.1 MGP_C57BL6NJ_G0024799.1 mouse_genomes_project 18 43974953 43978026 + MGP_C57BL6NJ_P0050021 Scgb3a2 protein_coding protein_coding MGP_C57BL6NJ_T0007175.1 MGP_C57BL6NJ_G0005900.1 mouse_genomes_project 18 14854781 14861158 + Gm15328 lincRNA lincRNA MGP_C57BL6NJ_T0100124.1 MGP_C57BL6NJ_G0038170.1 mouse_genomes_project 18 50218414 50218568 - Gm25440 snRNA snRNA MGP_C57BL6NJ_T0050530.1 MGP_C57BL6NJ_G0024979.1 mouse_genomes_project 18 78548851 78898980 + MGP_C57BL6NJ_P0050530 Zbtb7c protein_coding protein_coding MGP_C57BL6NJ_T0050531.1 MGP_C57BL6NJ_G0024979.1 mouse_genomes_project 18 78800160 78896862 + MGP_C57BL6NJ_P0050531 Zbtb7c protein_coding protein_coding MGP_C57BL6NJ_T0049815.1 MGP_C57BL6NJ_G0024701.1 mouse_genomes_project 18 36588627 36867652 + MGP_C57BL6NJ_P0049815 Pcdha1 protein_coding protein_coding MGP_C57BL6NJ_T0049816.1 MGP_C57BL6NJ_G0024701.1 mouse_genomes_project 18 36588728 36867648 + MGP_C57BL6NJ_P0049816 Pcdha1 protein_coding protein_coding MGP_C57BL6NJ_T0049485.1 MGP_C57BL6NJ_G0024572.1 mouse_genomes_project 18 11490637 11783121 - MGP_C57BL6NJ_P0049485 Zfp521 protein_coding protein_coding MGP_C57BL6NJ_T0010485.1 MGP_C57BL6NJ_G0008570.1 mouse_genomes_project 18 63219116 63219186 - Mir145a miRNA miRNA MGP_C57BL6NJ_T0101405.1 MGP_C57BL6NJ_G0039451.1 mouse_genomes_project 18 33186816 33186948 + Gm23639 snoRNA snoRNA MGP_C57BL6NJ_T0001133.1 MGP_C57BL6NJ_G0001039.1 mouse_genomes_project 18 2626058 2629727 - TEC TEC MGP_C57BL6NJ_T0049796.1 MGP_C57BL6NJ_G0024691.1 mouse_genomes_project 18 36326084 36336770 - MGP_C57BL6NJ_P0049796 E230025N22Rik protein_coding protein_coding MGP_C57BL6NJ_T0013670.1 MGP_C57BL6NJ_G0011715.1 mouse_genomes_project 18 54949652 54950818 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007189.1 MGP_C57BL6NJ_G0005910.1 mouse_genomes_project 18 34256314 34261212 + 2010110K18Rik lincRNA lincRNA MGP_C57BL6NJ_T0007190.1 MGP_C57BL6NJ_G0005910.1 mouse_genomes_project 18 34256417 34263193 + 2010110K18Rik lincRNA lincRNA MGP_C57BL6NJ_T0049490.1 MGP_C57BL6NJ_G0024575.1 mouse_genomes_project 18 12577405 12642004 + MGP_C57BL6NJ_P0049490 Psma8 protein_coding protein_coding MGP_C57BL6NJ_T0100143.1 MGP_C57BL6NJ_G0038189.1 mouse_genomes_project 18 88041716 88041872 - Gm25005 snRNA snRNA MGP_C57BL6NJ_T0050476.1 MGP_C57BL6NJ_G0024959.1 mouse_genomes_project 18 73642821 74847684 - MGP_C57BL6NJ_P0050476 Dcc protein_coding protein_coding MGP_C57BL6NJ_T0050477.1 MGP_C57BL6NJ_G0024959.1 mouse_genomes_project 18 73643073 74847632 - MGP_C57BL6NJ_P0050477 Dcc protein_coding protein_coding MGP_C57BL6NJ_T0050478.1 MGP_C57BL6NJ_G0024959.1 mouse_genomes_project 18 74418887 74847656 - Dcc protein_coding retained_intron MGP_C57BL6NJ_T0007204.1 MGP_C57BL6NJ_G0005921.1 mouse_genomes_project 18 59519551 59531856 + Gm26507 lincRNA lincRNA MGP_C57BL6NJ_T0100116.1 MGP_C57BL6NJ_G0038162.1 mouse_genomes_project 18 22459596 22459698 - Gm23207 snRNA snRNA MGP_C57BL6NJ_T0050033.1 MGP_C57BL6NJ_G0024808.1 mouse_genomes_project 18 44440452 44445698 + MGP_C57BL6NJ_P0050033 Gm10542 protein_coding protein_coding MGP_C57BL6NJ_T0049514.1 MGP_C57BL6NJ_G0024588.1 mouse_genomes_project 18 19129602 19138675 + MGP_C57BL6NJ_P0049514 Ttr protein_coding protein_coding MGP_C57BL6NJ_T0013634.1 MGP_C57BL6NJ_G0011679.1 mouse_genomes_project 18 9934775 9943878 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010487.1 MGP_C57BL6NJ_G0008572.1 mouse_genomes_project 18 67132368 67132434 + Mir122 miRNA miRNA MGP_C57BL6NJ_T0011713.1 MGP_C57BL6NJ_G0009798.1 mouse_genomes_project 18 24340645 24340955 - Gm25845 misc_RNA misc_RNA MGP_C57BL6NJ_T0049891.1 MGP_C57BL6NJ_G0024759.1 mouse_genomes_project 18 37473110 37559702 + MGP_C57BL6NJ_P0049891 Pcdhga12 protein_coding protein_coding MGP_C57BL6NJ_T0049892.1 MGP_C57BL6NJ_G0024759.1 mouse_genomes_project 18 37473303 37478822 + Pcdhga12 protein_coding retained_intron MGP_C57BL6NJ_T0050313.1 MGP_C57BL6NJ_G0024917.1 mouse_genomes_project 18 66285807 66304350 - MGP_C57BL6NJ_P0050313 Nars protein_coding protein_coding MGP_C57BL6NJ_T0049996.1 MGP_C57BL6NJ_G0024788.1 mouse_genomes_project 18 42359126 42431833 + MGP_C57BL6NJ_P0049996 Rbm27 protein_coding protein_coding MGP_C57BL6NJ_T0049997.1 MGP_C57BL6NJ_G0024788.1 mouse_genomes_project 18 42359126 42431833 + MGP_C57BL6NJ_P0049997 Rbm27 protein_coding protein_coding MGP_C57BL6NJ_T0099553.1 MGP_C57BL6NJ_G0037601.1 mouse_genomes_project 18 84000117 84009072 - Gm27238 sense_overlapping sense_overlapping MGP_C57BL6NJ_T0010494.1 MGP_C57BL6NJ_G0008579.1 mouse_genomes_project 18 78920937 78921038 + Mir6358 miRNA miRNA MGP_C57BL6NJ_T0013635.1 MGP_C57BL6NJ_G0011680.1 mouse_genomes_project 18 10021357 10021788 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049495.1 MGP_C57BL6NJ_G0024578.1 mouse_genomes_project 18 13313013 13329033 - MGP_C57BL6NJ_P0049495 Aqp4 protein_coding protein_coding MGP_C57BL6NJ_T0050120.1 MGP_C57BL6NJ_G0024842.1 mouse_genomes_project 18 53524320 53545195 + MGP_C57BL6NJ_P0050120 1700034E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0050121.1 MGP_C57BL6NJ_G0024842.1 mouse_genomes_project 18 53524327 53545195 + MGP_C57BL6NJ_P0050121 1700034E13Rik protein_coding protein_coding MGP_C57BL6NJ_T0003986.1 MGP_C57BL6NJ_G0003566.1 mouse_genomes_project 18 83327326 83330636 + Gm26676 antisense antisense MGP_C57BL6NJ_T0003977.1 MGP_C57BL6NJ_G0003562.1 mouse_genomes_project 18 65921540 66044686 - St8sia3os antisense antisense MGP_C57BL6NJ_T0003978.1 MGP_C57BL6NJ_G0003562.1 mouse_genomes_project 18 65969108 66044686 - St8sia3os antisense antisense MGP_C57BL6NJ_T0003979.1 MGP_C57BL6NJ_G0003562.1 mouse_genomes_project 18 66035400 66044677 - St8sia3os antisense antisense MGP_C57BL6NJ_T0003980.1 MGP_C57BL6NJ_G0003562.1 mouse_genomes_project 18 66043625 66044663 - St8sia3os antisense antisense MGP_C57BL6NJ_T0050249.1 MGP_C57BL6NJ_G0024892.1 mouse_genomes_project 18 62831622 62948640 - MGP_C57BL6NJ_P0050249 Ppargc1b protein_coding protein_coding MGP_C57BL6NJ_T0050250.1 MGP_C57BL6NJ_G0024892.1 mouse_genomes_project 18 62831996 62948609 - MGP_C57BL6NJ_P0050250 Ppargc1b protein_coding protein_coding MGP_C57BL6NJ_T0050251.1 MGP_C57BL6NJ_G0024892.1 mouse_genomes_project 18 62936132 62948609 - Ppargc1b protein_coding processed_transcript MGP_C57BL6NJ_T0007205.1 MGP_C57BL6NJ_G0005922.1 mouse_genomes_project 18 63210805 63218584 + Bvht lincRNA lincRNA MGP_C57BL6NJ_T0007206.1 MGP_C57BL6NJ_G0005922.1 mouse_genomes_project 18 63210916 63218764 + Bvht lincRNA lincRNA MGP_C57BL6NJ_T0050693.1 MGP_C57BL6NJ_G0025028.1 mouse_genomes_project 18 92293772 92387906 - Socs6 protein_coding processed_transcript MGP_C57BL6NJ_T0050694.1 MGP_C57BL6NJ_G0025028.1 mouse_genomes_project 18 92297239 92534052 - Socs6 protein_coding processed_transcript MGP_C57BL6NJ_T0050695.1 MGP_C57BL6NJ_G0025028.1 mouse_genomes_project 18 92500171 92534035 - MGP_C57BL6NJ_P0050695 Socs6 protein_coding protein_coding MGP_C57BL6NJ_T0050696.1 MGP_C57BL6NJ_G0025028.1 mouse_genomes_project 18 92504504 92567864 - MGP_C57BL6NJ_P0050696 Socs6 protein_coding protein_coding MGP_C57BL6NJ_T0018098.1 MGP_C57BL6NJ_G0015758.1 mouse_genomes_project 18 58603844 58805833 - 4930511M06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018101.1 MGP_C57BL6NJ_G0015758.1 mouse_genomes_project 18 58752514 58805446 - 4930511M06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018105.1 MGP_C57BL6NJ_G0015758.1 mouse_genomes_project 18 58797876 58805549 - 4930511M06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018106.1 MGP_C57BL6NJ_G0015758.1 mouse_genomes_project 18 58798529 58806027 - 4930511M06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018107.1 MGP_C57BL6NJ_G0015758.1 mouse_genomes_project 18 58801431 58806029 - 4930511M06Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0003959.1 MGP_C57BL6NJ_G0003546.1 mouse_genomes_project 18 36682386 36696145 - Gm10545 antisense antisense MGP_C57BL6NJ_T0049916.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37677265 37681374 + MGP_C57BL6NJ_P0049916 Rell2 protein_coding protein_coding MGP_C57BL6NJ_T0049917.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37677280 37680747 + MGP_C57BL6NJ_P0049917 Rell2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049918.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37677340 37680747 + MGP_C57BL6NJ_P0049918 Rell2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049919.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37677789 37679880 + MGP_C57BL6NJ_P0049919 Rell2 protein_coding protein_coding MGP_C57BL6NJ_T0049920.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37677825 37681365 + MGP_C57BL6NJ_P0049920 Rell2 protein_coding protein_coding MGP_C57BL6NJ_T0049921.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37678894 37680241 + Rell2 protein_coding retained_intron MGP_C57BL6NJ_T0049922.1 MGP_C57BL6NJ_G0024765.1 mouse_genomes_project 18 37678935 37680371 + Rell2 protein_coding retained_intron MGP_C57BL6NJ_T0018116.1 MGP_C57BL6NJ_G0015763.1 mouse_genomes_project 18 80659396 80662528 - F830208F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018117.1 MGP_C57BL6NJ_G0015763.1 mouse_genomes_project 18 80659396 80662881 - F830208F22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0049766.1 MGP_C57BL6NJ_G0024685.1 mouse_genomes_project 18 36128735 36139608 - MGP_C57BL6NJ_P0049766 Hbegf protein_coding protein_coding MGP_C57BL6NJ_T0011729.1 MGP_C57BL6NJ_G0009814.1 mouse_genomes_project 18 80674527 80674880 - Gm23954 misc_RNA misc_RNA MGP_C57BL6NJ_T0100130.1 MGP_C57BL6NJ_G0038176.1 mouse_genomes_project 18 62651422 62651527 - Gm26403 snRNA snRNA MGP_C57BL6NJ_T0011723.1 MGP_C57BL6NJ_G0009808.1 mouse_genomes_project 18 57087669 57087975 - Gm22484 misc_RNA misc_RNA MGP_C57BL6NJ_T0049745.1 MGP_C57BL6NJ_G0024677.1 mouse_genomes_project 18 35285056 35291933 - MGP_C57BL6NJ_P0049745 Tmem173 protein_coding protein_coding MGP_C57BL6NJ_T0050018.1 MGP_C57BL6NJ_G0024798.1 mouse_genomes_project 18 43931965 43941134 - MGP_C57BL6NJ_P0050018 Spink1 protein_coding protein_coding MGP_C57BL6NJ_T0100145.1 MGP_C57BL6NJ_G0038191.1 mouse_genomes_project 18 93964316 93964380 + Gm23859 snRNA snRNA MGP_C57BL6NJ_T0049851.1 MGP_C57BL6NJ_G0024728.1 mouse_genomes_project 18 37113430 37118307 + MGP_C57BL6NJ_P0049851 Pcdhb11 protein_coding protein_coding MGP_C57BL6NJ_T0100126.1 MGP_C57BL6NJ_G0038172.1 mouse_genomes_project 18 52403589 52403714 - Gm25785 snRNA snRNA MGP_C57BL6NJ_T0010456.1 MGP_C57BL6NJ_G0008541.1 mouse_genomes_project 18 8182425 8182497 - Mir1a-2 miRNA miRNA MGP_C57BL6NJ_T0010454.1 MGP_C57BL6NJ_G0008539.1 mouse_genomes_project 18 8179853 8179921 - Mir133a-1 miRNA miRNA MGP_C57BL6NJ_T0050115.1 MGP_C57BL6NJ_G0024838.1 mouse_genomes_project 18 53176780 53178231 + MGP_C57BL6NJ_P0050115 Ftmt protein_coding protein_coding MGP_C57BL6NJ_T0010472.1 MGP_C57BL6NJ_G0008557.1 mouse_genomes_project 18 47622789 47622839 + Gm25036 miRNA miRNA MGP_C57BL6NJ_T0003952.1 MGP_C57BL6NJ_G0003542.1 mouse_genomes_project 18 20203644 20207386 + 4930426D05Rik antisense antisense MGP_C57BL6NJ_T0003953.1 MGP_C57BL6NJ_G0003542.1 mouse_genomes_project 18 20203761 20207379 + 4930426D05Rik antisense antisense MGP_C57BL6NJ_T0003954.1 MGP_C57BL6NJ_G0003542.1 mouse_genomes_project 18 20204797 20207395 + 4930426D05Rik antisense antisense MGP_C57BL6NJ_T0003955.1 MGP_C57BL6NJ_G0003542.1 mouse_genomes_project 18 20204800 20208343 + 4930426D05Rik antisense antisense MGP_C57BL6NJ_T0050122.1 MGP_C57BL6NJ_G0024843.1 mouse_genomes_project 18 53580198 53582188 + MGP_C57BL6NJ_P0050122 Gykl1 protein_coding protein_coding MGP_C57BL6NJ_T0050293.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64683700 65110149 - MGP_C57BL6NJ_P0050293 Piezo2 protein_coding protein_coding MGP_C57BL6NJ_T0050294.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64683703 64708277 - MGP_C57BL6NJ_P0050294 Piezo2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050295.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64685035 64945349 - MGP_C57BL6NJ_P0050295 Piezo2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050296.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64696000 64705948 - Piezo2 protein_coding retained_intron MGP_C57BL6NJ_T0050297.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64696447 64711431 - Piezo2 protein_coding retained_intron MGP_C57BL6NJ_T0050298.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64738127 65109423 - MGP_C57BL6NJ_P0050298 Piezo2 protein_coding protein_coding MGP_C57BL6NJ_T0050299.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64758086 64829333 - MGP_C57BL6NJ_P0050299 Piezo2 protein_coding protein_coding MGP_C57BL6NJ_T0050300.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64788734 64870309 - MGP_C57BL6NJ_P0050300 Piezo2 protein_coding protein_coding MGP_C57BL6NJ_T0050301.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64788784 65110149 - MGP_C57BL6NJ_P0050301 Piezo2 protein_coding protein_coding MGP_C57BL6NJ_T0050302.1 MGP_C57BL6NJ_G0024911.1 mouse_genomes_project 18 64804935 65110135 - Piezo2 protein_coding retained_intron MGP_C57BL6NJ_T0049498.1 MGP_C57BL6NJ_G0024580.1 mouse_genomes_project 18 14616659 14847621 - MGP_C57BL6NJ_P0049498 Cdh2 protein_coding protein_coding MGP_C57BL6NJ_T0049499.1 MGP_C57BL6NJ_G0024580.1 mouse_genomes_project 18 14618630 14701811 - MGP_C57BL6NJ_P0049499 Cdh2 protein_coding protein_coding MGP_C57BL6NJ_T0049500.1 MGP_C57BL6NJ_G0024580.1 mouse_genomes_project 18 14619753 14845948 - MGP_C57BL6NJ_P0049500 Cdh2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049501.1 MGP_C57BL6NJ_G0024580.1 mouse_genomes_project 18 14806418 14846016 - Cdh2 protein_coding retained_intron MGP_C57BL6NJ_T0013680.1 MGP_C57BL6NJ_G0011725.1 mouse_genomes_project 18 82823789 82824785 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049661.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34079741 34107621 - MGP_C57BL6NJ_P0049661 Brd8 protein_coding protein_coding MGP_C57BL6NJ_T0049662.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34079741 34107621 - MGP_C57BL6NJ_P0049662 Brd8 protein_coding protein_coding MGP_C57BL6NJ_T0049663.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34082308 34107573 - Brd8 protein_coding retained_intron MGP_C57BL6NJ_T0049664.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34082337 34107621 - MGP_C57BL6NJ_P0049664 Brd8 protein_coding protein_coding MGP_C57BL6NJ_T0049665.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34083653 34107621 - MGP_C57BL6NJ_P0049665 Brd8 protein_coding protein_coding MGP_C57BL6NJ_T0049666.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34093295 34107621 - Brd8 protein_coding retained_intron MGP_C57BL6NJ_T0049667.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34094272 34107574 - Brd8 protein_coding processed_transcript MGP_C57BL6NJ_T0049668.1 MGP_C57BL6NJ_G0024652.1 mouse_genomes_project 18 34104933 34107621 - Brd8 protein_coding retained_intron MGP_C57BL6NJ_T0010493.1 MGP_C57BL6NJ_G0008578.1 mouse_genomes_project 18 77545283 77545365 - Gm25594 miRNA miRNA MGP_C57BL6NJ_T0050142.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57645396 57665966 - Aldh7a1 protein_coding processed_transcript MGP_C57BL6NJ_T0050143.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57661716 57711599 - MGP_C57BL6NJ_P0050143 Aldh7a1 protein_coding protein_coding MGP_C57BL6NJ_T0050144.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57665721 57701297 - MGP_C57BL6NJ_P0050144 Aldh7a1 protein_coding protein_coding MGP_C57BL6NJ_T0050145.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57665860 57701278 - MGP_C57BL6NJ_P0050145 Aldh7a1 protein_coding protein_coding MGP_C57BL6NJ_T0050146.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57665866 57701187 - MGP_C57BL6NJ_P0050146 Aldh7a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050147.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57671636 57676735 - Aldh7a1 protein_coding retained_intron MGP_C57BL6NJ_T0050148.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57676365 57701195 - MGP_C57BL6NJ_P0050148 Aldh7a1 protein_coding protein_coding MGP_C57BL6NJ_T0050149.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57685969 57698391 - Aldh7a1 protein_coding retained_intron MGP_C57BL6NJ_T0050150.1 MGP_C57BL6NJ_G0024853.1 mouse_genomes_project 18 57689335 57701166 - MGP_C57BL6NJ_P0050150 Aldh7a1 protein_coding protein_coding MGP_C57BL6NJ_T0049861.1 MGP_C57BL6NJ_G0024738.1 mouse_genomes_project 18 37209978 37214800 + MGP_C57BL6NJ_P0049861 Pcdhb21 protein_coding protein_coding MGP_C57BL6NJ_T0100129.1 MGP_C57BL6NJ_G0038175.1 mouse_genomes_project 18 58945800 58945906 - Gm26038 snRNA snRNA MGP_C57BL6NJ_T0101396.1 MGP_C57BL6NJ_G0039442.1 mouse_genomes_project 18 8154480 8154602 + Gm25116 snoRNA snoRNA MGP_C57BL6NJ_T0050597.1 MGP_C57BL6NJ_G0025001.1 mouse_genomes_project 18 83115362 83140510 - MGP_C57BL6NJ_P0050597 Adnp2 protein_coding protein_coding MGP_C57BL6NJ_T0049864.1 MGP_C57BL6NJ_G0024740.1 mouse_genomes_project 18 37331450 37332819 - MGP_C57BL6NJ_P0049864 Slc25a2 protein_coding protein_coding MGP_C57BL6NJ_T0049696.1 MGP_C57BL6NJ_G0024665.1 mouse_genomes_project 18 34729457 34735553 - MGP_C57BL6NJ_P0049696 Lrrtm2 protein_coding protein_coding MGP_C57BL6NJ_T0010492.1 MGP_C57BL6NJ_G0008577.1 mouse_genomes_project 18 72818060 72818164 + Mir6357 miRNA miRNA MGP_C57BL6NJ_T0050314.1 MGP_C57BL6NJ_G0024918.1 mouse_genomes_project 18 66320646 66466238 - MGP_C57BL6NJ_P0050314 Atp8b1 protein_coding protein_coding MGP_C57BL6NJ_T0010499.1 MGP_C57BL6NJ_G0008584.1 mouse_genomes_project 18 93436656 93436726 + Gm22694 miRNA miRNA MGP_C57BL6NJ_T0050369.1 MGP_C57BL6NJ_G0024936.1 mouse_genomes_project 18 69467244 69479272 + MGP_C57BL6NJ_P0050369 Tubb6 protein_coding protein_coding MGP_C57BL6NJ_T0049807.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36434474 36444486 + Hars2 protein_coding processed_transcript MGP_C57BL6NJ_T0049808.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36434474 36446430 + MGP_C57BL6NJ_P0049808 Hars2 protein_coding protein_coding MGP_C57BL6NJ_T0049809.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36434697 36445562 + MGP_C57BL6NJ_P0049809 Hars2 protein_coding protein_coding MGP_C57BL6NJ_T0049810.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36434735 36437925 + Hars2 protein_coding retained_intron MGP_C57BL6NJ_T0049811.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36440881 36442130 + Hars2 protein_coding retained_intron MGP_C57BL6NJ_T0049812.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36441687 36444027 + Hars2 protein_coding retained_intron MGP_C57BL6NJ_T0049813.1 MGP_C57BL6NJ_G0024699.1 mouse_genomes_project 18 36443880 36445321 + Hars2 protein_coding retained_intron MGP_C57BL6NJ_T0007200.1 MGP_C57BL6NJ_G0005918.1 mouse_genomes_project 18 55388002 55419925 + Redrum lincRNA lincRNA MGP_C57BL6NJ_T0003964.1 MGP_C57BL6NJ_G0003551.1 mouse_genomes_project 18 37520444 37522649 - BC037039 antisense antisense MGP_C57BL6NJ_T0050055.1 MGP_C57BL6NJ_G0024815.1 mouse_genomes_project 18 46525878 46561738 - MGP_C57BL6NJ_P0050055 Trim36 protein_coding protein_coding MGP_C57BL6NJ_T0050056.1 MGP_C57BL6NJ_G0024815.1 mouse_genomes_project 18 46525878 46575135 - MGP_C57BL6NJ_P0050056 Trim36 protein_coding protein_coding MGP_C57BL6NJ_T0049944.1 MGP_C57BL6NJ_G0024771.1 mouse_genomes_project 18 38044732 38068146 + MGP_C57BL6NJ_P0049944 Rnf14 protein_coding protein_coding MGP_C57BL6NJ_T0001137.1 MGP_C57BL6NJ_G0001043.1 mouse_genomes_project 18 46465599 46466198 - TEC TEC MGP_C57BL6NJ_T0010479.1 MGP_C57BL6NJ_G0008564.1 mouse_genomes_project 18 62302507 62302595 + Mir5107 miRNA miRNA MGP_C57BL6NJ_T0013636.1 MGP_C57BL6NJ_G0011681.1 mouse_genomes_project 18 10164521 10165296 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049887.1 MGP_C57BL6NJ_G0024755.1 mouse_genomes_project 18 37445918 37559702 + MGP_C57BL6NJ_P0049887 Pcdhgb6 protein_coding protein_coding MGP_C57BL6NJ_T0011725.1 MGP_C57BL6NJ_G0009810.1 mouse_genomes_project 18 67314844 67315960 + Gm22567 misc_RNA misc_RNA MGP_C57BL6NJ_T0049412.1 MGP_C57BL6NJ_G0024552.1 mouse_genomes_project 18 7418898 7533199 - MGP_C57BL6NJ_P0049412 Rock1 protein_coding protein_coding MGP_C57BL6NJ_T0050112.1 MGP_C57BL6NJ_G0024835.1 mouse_genomes_project 18 51270864 51271908 - MGP_C57BL6NJ_P0050112 Hdhd1a protein_coding protein_coding MGP_C57BL6NJ_T0049903.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37561429 37656748 - MGP_C57BL6NJ_P0049903 Diaph1 protein_coding protein_coding MGP_C57BL6NJ_T0049904.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37561431 37656653 - MGP_C57BL6NJ_P0049904 Diaph1 protein_coding protein_coding MGP_C57BL6NJ_T0049905.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37561431 37656695 - MGP_C57BL6NJ_P0049905 Diaph1 protein_coding protein_coding MGP_C57BL6NJ_T0049906.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37561433 37625429 - MGP_C57BL6NJ_P0049906 Diaph1 protein_coding protein_coding MGP_C57BL6NJ_T0049907.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37562652 37656683 - MGP_C57BL6NJ_P0049907 Diaph1 protein_coding protein_coding MGP_C57BL6NJ_T0049908.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37562928 37571230 - Diaph1 protein_coding processed_transcript MGP_C57BL6NJ_T0049909.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37572263 37656590 - MGP_C57BL6NJ_P0049909 Diaph1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049910.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37573307 37573967 - Diaph1 protein_coding retained_intron MGP_C57BL6NJ_T0049911.1 MGP_C57BL6NJ_G0024763.1 mouse_genomes_project 18 37615289 37617075 - Diaph1 protein_coding retained_intron MGP_C57BL6NJ_T0050633.1 MGP_C57BL6NJ_G0025010.1 mouse_genomes_project 18 83747522 83950580 - MGP_C57BL6NJ_P0050633 Atp9b protein_coding protein_coding MGP_C57BL6NJ_T0050634.1 MGP_C57BL6NJ_G0025010.1 mouse_genomes_project 18 83747763 83950461 - MGP_C57BL6NJ_P0050634 Atp9b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049471.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10452929 10532813 - MGP_C57BL6NJ_P0049471 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049472.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10453783 10594506 - MGP_C57BL6NJ_P0049472 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049473.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10453796 10651320 - MGP_C57BL6NJ_P0049473 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049474.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10471333 10475914 - Osbpl1a protein_coding retained_intron MGP_C57BL6NJ_T0049475.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10475579 10576077 - MGP_C57BL6NJ_P0049475 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049476.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10477242 10603575 - Osbpl1a protein_coding retained_intron MGP_C57BL6NJ_T0049477.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10480075 10581880 - MGP_C57BL6NJ_P0049477 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049478.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10582990 10660416 - Osbpl1a protein_coding retained_intron MGP_C57BL6NJ_T0049479.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10615070 10660352 - MGP_C57BL6NJ_P0049479 Osbpl1a protein_coding protein_coding MGP_C57BL6NJ_T0049480.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10624758 10660381 - MGP_C57BL6NJ_P0049480 Osbpl1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049481.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10645644 10660367 - Osbpl1a protein_coding retained_intron MGP_C57BL6NJ_T0049482.1 MGP_C57BL6NJ_G0024569.1 mouse_genomes_project 18 10651207 10660364 - Osbpl1a protein_coding processed_transcript MGP_C57BL6NJ_T0050282.1 MGP_C57BL6NJ_G0024908.1 mouse_genomes_project 18 64300976 64301797 + MGP_C57BL6NJ_P0050282 Gm17732 protein_coding protein_coding MGP_C57BL6NJ_T0049986.1 MGP_C57BL6NJ_G0024781.1 mouse_genomes_project 18 40161120 40454417 + MGP_C57BL6NJ_P0049986 Kctd16 protein_coding protein_coding MGP_C57BL6NJ_T0102983.1 MGP_C57BL6NJ_G0040777.1 mouse_genomes_project 18 36651120 36660659 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049520.1 MGP_C57BL6NJ_G0024592.1 mouse_genomes_project 18 19509195 19541364 + MGP_C57BL6NJ_P0049520 Rnf138 protein_coding protein_coding MGP_C57BL6NJ_T0049521.1 MGP_C57BL6NJ_G0024592.1 mouse_genomes_project 18 19509195 19541364 + MGP_C57BL6NJ_P0049521 Rnf138 protein_coding protein_coding MGP_C57BL6NJ_T0049589.1 MGP_C57BL6NJ_G0024617.1 mouse_genomes_project 18 29324104 29405114 + MGP_C57BL6NJ_P0049589 Pik3c3 protein_coding protein_coding MGP_C57BL6NJ_T0049590.1 MGP_C57BL6NJ_G0024617.1 mouse_genomes_project 18 29324227 29387956 + MGP_C57BL6NJ_P0049590 Pik3c3 protein_coding protein_coding MGP_C57BL6NJ_T0049591.1 MGP_C57BL6NJ_G0024617.1 mouse_genomes_project 18 29324229 29400104 + MGP_C57BL6NJ_P0049591 Pik3c3 protein_coding protein_coding MGP_C57BL6NJ_T0049592.1 MGP_C57BL6NJ_G0024617.1 mouse_genomes_project 18 29324284 29405108 + MGP_C57BL6NJ_P0049592 Pik3c3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049826.1 MGP_C57BL6NJ_G0024708.1 mouse_genomes_project 18 36636503 37549446 + MGP_C57BL6NJ_P0049826 Gm37013 protein_coding protein_coding MGP_C57BL6NJ_T0049651.1 MGP_C57BL6NJ_G0024647.1 mouse_genomes_project 18 33853310 33887016 + MGP_C57BL6NJ_P0049651 Pkd2l2 protein_coding protein_coding MGP_C57BL6NJ_T0049652.1 MGP_C57BL6NJ_G0024647.1 mouse_genomes_project 18 33853310 33888011 + MGP_C57BL6NJ_P0049652 Pkd2l2 protein_coding protein_coding MGP_C57BL6NJ_T0049455.1 MGP_C57BL6NJ_G0024565.1 mouse_genomes_project 18 9896594 9959774 - MGP_C57BL6NJ_P0049455 Ankrd29 protein_coding protein_coding MGP_C57BL6NJ_T0049456.1 MGP_C57BL6NJ_G0024565.1 mouse_genomes_project 18 9896597 9918149 - Ankrd29 protein_coding processed_transcript MGP_C57BL6NJ_T0049457.1 MGP_C57BL6NJ_G0024565.1 mouse_genomes_project 18 9898805 9959701 - MGP_C57BL6NJ_P0049457 Ankrd29 protein_coding protein_coding MGP_C57BL6NJ_T0049458.1 MGP_C57BL6NJ_G0024565.1 mouse_genomes_project 18 9923142 9959783 - MGP_C57BL6NJ_P0049458 Ankrd29 protein_coding protein_coding MGP_C57BL6NJ_T0049526.1 MGP_C57BL6NJ_G0024596.1 mouse_genomes_project 18 20371894 20753859 - MGP_C57BL6NJ_P0049526 Ccdc178 protein_coding protein_coding MGP_C57BL6NJ_T0049527.1 MGP_C57BL6NJ_G0024596.1 mouse_genomes_project 18 20372295 20748993 - MGP_C57BL6NJ_P0049527 Ccdc178 protein_coding protein_coding MGP_C57BL6NJ_T0049599.1 MGP_C57BL6NJ_G0024621.1 mouse_genomes_project 18 30774585 30775825 + MGP_C57BL6NJ_P0049599 B930094E09Rik protein_coding protein_coding MGP_C57BL6NJ_T0050393.1 MGP_C57BL6NJ_G0024948.1 mouse_genomes_project 18 70493915 70496024 + MGP_C57BL6NJ_P0050393 Mc5r protein_coding protein_coding MGP_C57BL6NJ_T0013655.1 MGP_C57BL6NJ_G0011700.1 mouse_genomes_project 18 36997467 36998724 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049486.1 MGP_C57BL6NJ_G0024573.1 mouse_genomes_project 18 12273874 12274318 + MGP_C57BL6NJ_P0049486 Gm5160 protein_coding protein_coding MGP_C57BL6NJ_T0101414.1 MGP_C57BL6NJ_G0039460.1 mouse_genomes_project 18 56109725 56109818 - Gm24183 snoRNA snoRNA MGP_C57BL6NJ_T0013647.1 MGP_C57BL6NJ_G0011692.1 mouse_genomes_project 18 29566356 29566731 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049682.1 MGP_C57BL6NJ_G0024658.1 mouse_genomes_project 18 34263413 34278324 + MGP_C57BL6NJ_P0049682 Fam53c protein_coding protein_coding MGP_C57BL6NJ_T0049683.1 MGP_C57BL6NJ_G0024658.1 mouse_genomes_project 18 34264063 34278302 + MGP_C57BL6NJ_P0049683 Fam53c protein_coding protein_coding MGP_C57BL6NJ_T0100125.1 MGP_C57BL6NJ_G0038171.1 mouse_genomes_project 18 52009133 52009240 - Gm25739 snRNA snRNA MGP_C57BL6NJ_T0049655.1 MGP_C57BL6NJ_G0024650.1 mouse_genomes_project 18 34033011 34051569 - MGP_C57BL6NJ_P0049655 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049656.1 MGP_C57BL6NJ_G0024650.1 mouse_genomes_project 18 34034036 34051983 - MGP_C57BL6NJ_P0049656 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049657.1 MGP_C57BL6NJ_G0024650.1 mouse_genomes_project 18 34034086 34051970 - MGP_C57BL6NJ_P0049657 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049658.1 MGP_C57BL6NJ_G0024650.1 mouse_genomes_project 18 34039524 34051966 - MGP_C57BL6NJ_P0049658 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100140.1 MGP_C57BL6NJ_G0038186.1 mouse_genomes_project 18 84052898 84053016 + Gm25718 snRNA snRNA MGP_C57BL6NJ_T0101418.1 MGP_C57BL6NJ_G0039464.1 mouse_genomes_project 18 68545298 68545409 - Gm24679 snoRNA snoRNA MGP_C57BL6NJ_T0049496.1 MGP_C57BL6NJ_G0024579.1 mouse_genomes_project 18 13381651 13666475 - MGP_C57BL6NJ_P0049496 Chst9 protein_coding protein_coding MGP_C57BL6NJ_T0049497.1 MGP_C57BL6NJ_G0024579.1 mouse_genomes_project 18 13381651 13708262 - MGP_C57BL6NJ_P0049497 Chst9 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0010497.1 MGP_C57BL6NJ_G0008582.1 mouse_genomes_project 18 85845792 85845852 + Mir5112 miRNA miRNA MGP_C57BL6NJ_T0049635.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33652685 33749467 + MGP_C57BL6NJ_P0049635 Apc protein_coding protein_coding MGP_C57BL6NJ_T0049636.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33652745 33758150 + MGP_C57BL6NJ_P0049636 Apc protein_coding protein_coding MGP_C57BL6NJ_T0049637.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33652745 33754569 + MGP_C57BL6NJ_P0049637 Apc protein_coding protein_coding MGP_C57BL6NJ_T0049638.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33652774 33735361 + Apc protein_coding retained_intron MGP_C57BL6NJ_T0049639.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33653013 33711237 + MGP_C57BL6NJ_P0049639 Apc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049640.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33681293 33697297 + Apc protein_coding retained_intron MGP_C57BL6NJ_T0049641.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33681297 33725524 + MGP_C57BL6NJ_P0049641 Apc protein_coding protein_coding MGP_C57BL6NJ_T0049642.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33735124 33750287 + MGP_C57BL6NJ_P0049642 Apc protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049643.1 MGP_C57BL6NJ_G0024644.1 mouse_genomes_project 18 33736419 33746698 + Apc protein_coding processed_transcript MGP_C57BL6NJ_T0049370.1 MGP_C57BL6NJ_G0024537.1 mouse_genomes_project 18 3546707 3627805 - MGP_C57BL6NJ_P0049370 Epc1 protein_coding protein_coding MGP_C57BL6NJ_T0049371.1 MGP_C57BL6NJ_G0024537.1 mouse_genomes_project 18 3546709 3602030 - MGP_C57BL6NJ_P0049371 Epc1 protein_coding protein_coding MGP_C57BL6NJ_T0049372.1 MGP_C57BL6NJ_G0024537.1 mouse_genomes_project 18 3550348 3552651 - MGP_C57BL6NJ_P0049372 Epc1 protein_coding protein_coding MGP_C57BL6NJ_T0049373.1 MGP_C57BL6NJ_G0024537.1 mouse_genomes_project 18 3600333 3602030 - MGP_C57BL6NJ_P0049373 Epc1 protein_coding protein_coding MGP_C57BL6NJ_T0050140.1 MGP_C57BL6NJ_G0024851.1 mouse_genomes_project 18 55897702 56007206 - MGP_C57BL6NJ_P0050140 Zfp608 protein_coding protein_coding MGP_C57BL6NJ_T0050522.1 MGP_C57BL6NJ_G0024975.1 mouse_genomes_project 18 77660260 77666980 + MGP_C57BL6NJ_P0050522 BC031181 protein_coding protein_coding MGP_C57BL6NJ_T0049606.1 MGP_C57BL6NJ_G0024626.1 mouse_genomes_project 18 31004402 31005037 - MGP_C57BL6NJ_P0049606 Gm6665 protein_coding protein_coding MGP_C57BL6NJ_T0013668.1 MGP_C57BL6NJ_G0011713.1 mouse_genomes_project 18 53850361 53850918 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0099218.1 MGP_C57BL6NJ_G0037282.1 mouse_genomes_project 18 25757186 25757414 - Gm26106 ribozyme ribozyme MGP_C57BL6NJ_T0050462.1 MGP_C57BL6NJ_G0024955.1 mouse_genomes_project 18 72755301 72775239 - MGP_C57BL6NJ_P0050462 4930503L19Rik protein_coding protein_coding MGP_C57BL6NJ_T0050169.1 MGP_C57BL6NJ_G0024861.1 mouse_genomes_project 18 58711129 58720514 + MGP_C57BL6NJ_P0050169 Ctxn3 protein_coding protein_coding MGP_C57BL6NJ_T0050661.1 MGP_C57BL6NJ_G0025016.1 mouse_genomes_project 18 87261622 87341128 - MGP_C57BL6NJ_P0050661 Tshz1 protein_coding protein_coding MGP_C57BL6NJ_T0050662.1 MGP_C57BL6NJ_G0025016.1 mouse_genomes_project 18 87262077 87341114 - Tshz1 protein_coding processed_transcript MGP_C57BL6NJ_T0050585.1 MGP_C57BL6NJ_G0024993.1 mouse_genomes_project 18 80660682 80755311 + MGP_C57BL6NJ_P0050585 Pstpip2 protein_coding protein_coding MGP_C57BL6NJ_T0101426.1 MGP_C57BL6NJ_G0039472.1 mouse_genomes_project 18 85063737 85063865 + Gm26012 snoRNA snoRNA MGP_C57BL6NJ_T0013633.1 MGP_C57BL6NJ_G0011678.1 mouse_genomes_project 18 9817047 9818142 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100138.1 MGP_C57BL6NJ_G0038184.1 mouse_genomes_project 18 81413905 81414012 + Gm26430 snRNA snRNA MGP_C57BL6NJ_T0049802.1 MGP_C57BL6NJ_G0024696.1 mouse_genomes_project 18 36409934 36413404 + MGP_C57BL6NJ_P0049802 Wdr55 protein_coding protein_coding MGP_C57BL6NJ_T0100120.1 MGP_C57BL6NJ_G0038166.1 mouse_genomes_project 18 33615976 33616038 - Gm23411 snRNA snRNA MGP_C57BL6NJ_T0049508.1 MGP_C57BL6NJ_G0024584.1 mouse_genomes_project 18 18622106 18759491 + MGP_C57BL6NJ_P0049508 protein_coding protein_coding MGP_C57BL6NJ_T0010458.1 MGP_C57BL6NJ_G0008543.1 mouse_genomes_project 18 10402584 10402669 + Mir1948 miRNA miRNA MGP_C57BL6NJ_T0049800.1 MGP_C57BL6NJ_G0024695.1 mouse_genomes_project 18 36393267 36407335 + MGP_C57BL6NJ_P0049800 Ik protein_coding protein_coding MGP_C57BL6NJ_T0049801.1 MGP_C57BL6NJ_G0024695.1 mouse_genomes_project 18 36393311 36407338 + MGP_C57BL6NJ_P0049801 Ik protein_coding unknown_likely_coding MGP_C57BL6NJ_T0003969.1 MGP_C57BL6NJ_G0003556.1 mouse_genomes_project 18 43076051 43079469 + 4933407I08Rik antisense antisense MGP_C57BL6NJ_T0050243.1 MGP_C57BL6NJ_G0024890.1 mouse_genomes_project 18 62707328 62727460 - MGP_C57BL6NJ_P0050243 Slc26a2 protein_coding protein_coding MGP_C57BL6NJ_T0050244.1 MGP_C57BL6NJ_G0024890.1 mouse_genomes_project 18 62713031 62716217 - MGP_C57BL6NJ_P0050244 Slc26a2 protein_coding protein_coding MGP_C57BL6NJ_T0050245.1 MGP_C57BL6NJ_G0024890.1 mouse_genomes_project 18 62717552 62727228 - MGP_C57BL6NJ_P0050245 Slc26a2 protein_coding protein_coding MGP_C57BL6NJ_T0050246.1 MGP_C57BL6NJ_G0024890.1 mouse_genomes_project 18 62723037 62727205 - Slc26a2 protein_coding retained_intron MGP_C57BL6NJ_T0003961.1 MGP_C57BL6NJ_G0003548.1 mouse_genomes_project 18 37126255 37130497 - Gm37446 antisense antisense MGP_C57BL6NJ_T0049725.1 MGP_C57BL6NJ_G0024670.1 mouse_genomes_project 18 35153970 35166612 - MGP_C57BL6NJ_P0049725 Slc23a1 protein_coding protein_coding MGP_C57BL6NJ_T0049726.1 MGP_C57BL6NJ_G0024670.1 mouse_genomes_project 18 35158740 35166564 - MGP_C57BL6NJ_P0049726 Slc23a1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049727.1 MGP_C57BL6NJ_G0024670.1 mouse_genomes_project 18 35158771 35166505 - MGP_C57BL6NJ_P0049727 Slc23a1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0049728.1 MGP_C57BL6NJ_G0024670.1 mouse_genomes_project 18 35159436 35161973 - Slc23a1 protein_coding processed_transcript MGP_C57BL6NJ_T0049729.1 MGP_C57BL6NJ_G0024670.1 mouse_genomes_project 18 35162190 35166604 - Slc23a1 protein_coding processed_transcript MGP_C57BL6NJ_T0049376.1 MGP_C57BL6NJ_G0024540.1 mouse_genomes_project 18 4051834 4084622 - Mkx protein_coding processed_transcript MGP_C57BL6NJ_T0049377.1 MGP_C57BL6NJ_G0024540.1 mouse_genomes_project 18 4082966 4154037 - MGP_C57BL6NJ_P0049377 Mkx protein_coding protein_coding MGP_C57BL6NJ_T0049378.1 MGP_C57BL6NJ_G0024540.1 mouse_genomes_project 18 4084952 4142315 - Mkx protein_coding retained_intron MGP_C57BL6NJ_T0049379.1 MGP_C57BL6NJ_G0024540.1 mouse_genomes_project 18 4149898 4153039 - Mkx protein_coding processed_transcript MGP_C57BL6NJ_T0049380.1 MGP_C57BL6NJ_G0024540.1 mouse_genomes_project 18 4151566 4153983 - Mkx protein_coding retained_intron MGP_C57BL6NJ_T0050688.1 MGP_C57BL6NJ_G0025026.1 mouse_genomes_project 18 90160487 90167661 + MGP_C57BL6NJ_P0050688 Cbln2 protein_coding protein_coding MGP_C57BL6NJ_T0050689.1 MGP_C57BL6NJ_G0025026.1 mouse_genomes_project 18 90160897 90166967 + MGP_C57BL6NJ_P0050689 Cbln2 protein_coding protein_coding MGP_C57BL6NJ_T0050690.1 MGP_C57BL6NJ_G0025026.1 mouse_genomes_project 18 90161442 90167659 + MGP_C57BL6NJ_P0050690 Cbln2 protein_coding protein_coding MGP_C57BL6NJ_T0050691.1 MGP_C57BL6NJ_G0025026.1 mouse_genomes_project 18 90162425 90167661 + MGP_C57BL6NJ_P0050691 Cbln2 protein_coding protein_coding MGP_C57BL6NJ_T0013630.1 MGP_C57BL6NJ_G0011675.1 mouse_genomes_project 18 3467526 3467835 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050174.1 MGP_C57BL6NJ_G0024863.1 mouse_genomes_project 18 59164063 59237020 + MGP_C57BL6NJ_P0050174 Slc12a2 protein_coding protein_coding MGP_C57BL6NJ_T0049877.1 MGP_C57BL6NJ_G0024749.1 mouse_genomes_project 18 37409475 37559702 + MGP_C57BL6NJ_P0049877 Pcdhga6 protein_coding protein_coding MGP_C57BL6NJ_T0050552.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79750615 79829062 - MGP_C57BL6NJ_P0050552 Katnal2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050553.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79750615 79829019 - MGP_C57BL6NJ_P0050553 Katnal2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050554.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79750852 79829000 - MGP_C57BL6NJ_P0050554 Katnal2 protein_coding protein_coding MGP_C57BL6NJ_T0050555.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79751927 79781985 - Katnal2 protein_coding processed_transcript MGP_C57BL6NJ_T0050556.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79768254 79829072 - MGP_C57BL6NJ_P0050556 Katnal2 protein_coding protein_coding MGP_C57BL6NJ_T0050557.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79776748 79787144 - Katnal2 protein_coding processed_transcript MGP_C57BL6NJ_T0050558.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79777649 79783315 - Katnal2 protein_coding retained_intron MGP_C57BL6NJ_T0050559.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79785153 79829063 - MGP_C57BL6NJ_P0050559 Katnal2 protein_coding protein_coding MGP_C57BL6NJ_T0050560.1 MGP_C57BL6NJ_G0024984.1 mouse_genomes_project 18 79785645 79829074 - MGP_C57BL6NJ_P0050560 Katnal2 protein_coding protein_coding MGP_C57BL6NJ_T0049835.1 MGP_C57BL6NJ_G0024715.1 mouse_genomes_project 18 36694063 36867648 + MGP_C57BL6NJ_P0049835 Pcdha12 protein_coding protein_coding MGP_C57BL6NJ_T0013658.1 MGP_C57BL6NJ_G0011703.1 mouse_genomes_project 18 38529518 38530119 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049870.1 MGP_C57BL6NJ_G0024745.1 mouse_genomes_project 18 37378306 37559699 + MGP_C57BL6NJ_P0049870 Pcdhgb1 protein_coding protein_coding MGP_C57BL6NJ_T0049871.1 MGP_C57BL6NJ_G0024745.1 mouse_genomes_project 18 37378330 37385577 + Pcdhgb1 protein_coding processed_transcript MGP_C57BL6NJ_T0049603.1 MGP_C57BL6NJ_G0024624.1 mouse_genomes_project 18 30969253 30977005 + MGP_C57BL6NJ_P0049603 Polr2d protein_coding protein_coding MGP_C57BL6NJ_T0049695.1 MGP_C57BL6NJ_G0024664.1 mouse_genomes_project 18 34632144 34774874 + MGP_C57BL6NJ_P0049695 Ctnna1 protein_coding protein_coding MGP_C57BL6NJ_T0050364.1 MGP_C57BL6NJ_G0024932.1 mouse_genomes_project 18 69143468 69286802 + MGP_C57BL6NJ_P0050364 Gnal protein_coding protein_coding MGP_C57BL6NJ_T0050365.1 MGP_C57BL6NJ_G0024932.1 mouse_genomes_project 18 69190598 69286802 + MGP_C57BL6NJ_P0050365 Gnal protein_coding protein_coding MGP_C57BL6NJ_T0007186.1 MGP_C57BL6NJ_G0005908.1 mouse_genomes_project 18 32198360 32222930 - 2310026I22Rik lincRNA lincRNA MGP_C57BL6NJ_T0049859.1 MGP_C57BL6NJ_G0024736.1 mouse_genomes_project 18 37192377 37199746 + MGP_C57BL6NJ_P0049859 Pcdhb19 protein_coding protein_coding MGP_C57BL6NJ_T0050158.1 MGP_C57BL6NJ_G0024856.1 mouse_genomes_project 18 57881096 57933321 + MGP_C57BL6NJ_P0050158 Lmnb1 protein_coding protein_coding MGP_C57BL6NJ_T0050159.1 MGP_C57BL6NJ_G0024856.1 mouse_genomes_project 18 57905803 57910819 + Lmnb1 protein_coding retained_intron MGP_C57BL6NJ_T0101401.1 MGP_C57BL6NJ_G0039447.1 mouse_genomes_project 18 27215043 27215175 + Gm24246 snoRNA snoRNA MGP_C57BL6NJ_T0013646.1 MGP_C57BL6NJ_G0011691.1 mouse_genomes_project 18 29532522 29532999 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050703.1 MGP_C57BL6NJ_G0025033.1 mouse_genomes_project 18 94340743 94353364 + MGP_C57BL6NJ_P0050703 unknown_likely_coding unknown_likely_coding MGP_C57BL6NJ_T0049364.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3288990 3329691 - MGP_C57BL6NJ_P0049364 Kif5b protein_coding protein_coding MGP_C57BL6NJ_T0049365.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3291320 3302743 - Kif5b protein_coding retained_intron MGP_C57BL6NJ_T0049366.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3301648 3312212 - Kif5b protein_coding retained_intron MGP_C57BL6NJ_T0049367.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3302771 3329638 - MGP_C57BL6NJ_P0049367 Kif5b protein_coding protein_coding MGP_C57BL6NJ_T0049368.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3309042 3311221 - Kif5b protein_coding retained_intron MGP_C57BL6NJ_T0049369.1 MGP_C57BL6NJ_G0024536.1 mouse_genomes_project 18 3329481 3330342 - Kif5b protein_coding processed_transcript MGP_C57BL6NJ_T0000473.1 MGP_C57BL6NJ_G0000392.1 mouse_genomes_project 18 67756826 67756890 + mt-Tl2 Mt_tRNA Mt_tRNA MGP_C57BL6NJ_T0050480.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76186293 76245310 - MGP_C57BL6NJ_P0050480 Smad4 protein_coding protein_coding MGP_C57BL6NJ_T0050481.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76187285 76226557 - MGP_C57BL6NJ_P0050481 Smad4 protein_coding protein_coding MGP_C57BL6NJ_T0050482.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76187442 76189848 - Smad4 protein_coding processed_transcript MGP_C57BL6NJ_T0050483.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76187496 76197104 - Smad4 protein_coding processed_transcript MGP_C57BL6NJ_T0050484.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76187507 76210018 - Smad4 protein_coding processed_transcript MGP_C57BL6NJ_T0050485.1 MGP_C57BL6NJ_G0024961.1 mouse_genomes_project 18 76206021 76223444 - Smad4 protein_coding processed_transcript MGP_C57BL6NJ_T0049670.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34113929 34136779 - MGP_C57BL6NJ_P0049670 Cdc23 protein_coding protein_coding MGP_C57BL6NJ_T0049671.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34114661 34136779 - MGP_C57BL6NJ_P0049671 Cdc23 protein_coding protein_coding MGP_C57BL6NJ_T0049672.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34116656 34117609 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049673.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34119932 34136762 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049674.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34119935 34120971 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049675.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34120937 34121750 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049676.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34126427 34130364 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049677.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34131896 34136762 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049678.1 MGP_C57BL6NJ_G0024654.1 mouse_genomes_project 18 34132747 34136766 - Cdc23 protein_coding retained_intron MGP_C57BL6NJ_T0049948.1 MGP_C57BL6NJ_G0024773.1 mouse_genomes_project 18 38193450 38239907 + MGP_C57BL6NJ_P0049948 Ndfip1 protein_coding protein_coding MGP_C57BL6NJ_T0049503.1 MGP_C57BL6NJ_G0024582.1 mouse_genomes_project 18 18351071 18380826 - MGP_C57BL6NJ_P0049503 Dsc2 protein_coding protein_coding MGP_C57BL6NJ_T0049504.1 MGP_C57BL6NJ_G0024582.1 mouse_genomes_project 18 18351071 18380902 - MGP_C57BL6NJ_P0049504 Dsc2 protein_coding protein_coding MGP_C57BL6NJ_T0049505.1 MGP_C57BL6NJ_G0024582.1 mouse_genomes_project 18 18351781 18359492 - MGP_C57BL6NJ_P0049505 Dsc2 protein_coding protein_coding MGP_C57BL6NJ_T0049506.1 MGP_C57BL6NJ_G0024582.1 mouse_genomes_project 18 18351917 18380857 - MGP_C57BL6NJ_P0049506 Dsc2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050057.1 MGP_C57BL6NJ_G0024816.1 mouse_genomes_project 18 46604812 46650099 - MGP_C57BL6NJ_P0050057 Pggt1b protein_coding protein_coding MGP_C57BL6NJ_T0099051.1 MGP_C57BL6NJ_G0037115.1 mouse_genomes_project 18 23389058 23389173 - n-R5s23 rRNA rRNA MGP_C57BL6NJ_T0050586.1 MGP_C57BL6NJ_G0024994.1 mouse_genomes_project 18 80769323 80883997 + MGP_C57BL6NJ_P0050586 Epg5 protein_coding protein_coding MGP_C57BL6NJ_T0049437.1 MGP_C57BL6NJ_G0024561.1 mouse_genomes_project 18 9602051 9759498 - MGP_C57BL6NJ_P0049437 Tmem241 protein_coding protein_coding MGP_C57BL6NJ_T0049438.1 MGP_C57BL6NJ_G0024561.1 mouse_genomes_project 18 9604278 9759470 - MGP_C57BL6NJ_P0049438 Tmem241 protein_coding protein_coding MGP_C57BL6NJ_T0049439.1 MGP_C57BL6NJ_G0024561.1 mouse_genomes_project 18 9695498 9759498 - MGP_C57BL6NJ_P0049439 Tmem241 protein_coding protein_coding MGP_C57BL6NJ_T0049769.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36185453 36211299 + MGP_C57BL6NJ_P0049769 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049770.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36186077 36297047 + MGP_C57BL6NJ_P0049770 Ankhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049771.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36186077 36297047 + MGP_C57BL6NJ_P0049771 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049772.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36186144 36304056 + MGP_C57BL6NJ_P0049772 Ankhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049773.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36231838 36255979 + MGP_C57BL6NJ_P0049773 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049774.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36237195 36266818 + Ankhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0049775.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36244925 36266806 + MGP_C57BL6NJ_P0049775 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049776.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36245328 36255569 + Ankhd1 protein_coding retained_intron MGP_C57BL6NJ_T0049777.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36273890 36278531 + MGP_C57BL6NJ_P0049777 Ankhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049778.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36274114 36278537 + MGP_C57BL6NJ_P0049778 Ankhd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049779.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36276915 36279813 + Ankhd1 protein_coding retained_intron MGP_C57BL6NJ_T0049780.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36279840 36297052 + MGP_C57BL6NJ_P0049780 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049781.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36283611 36304056 + MGP_C57BL6NJ_P0049781 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049782.1 MGP_C57BL6NJ_G0024687.1 mouse_genomes_project 18 36291260 36296949 + MGP_C57BL6NJ_P0049782 Ankhd1 protein_coding protein_coding MGP_C57BL6NJ_T0049839.1 MGP_C57BL6NJ_G0024719.1 mouse_genomes_project 18 36985092 36987905 + MGP_C57BL6NJ_P0049839 Pcdhb2 protein_coding protein_coding MGP_C57BL6NJ_T0049840.1 MGP_C57BL6NJ_G0024719.1 mouse_genomes_project 18 36985120 36986702 + MGP_C57BL6NJ_P0049840 Pcdhb2 protein_coding protein_coding MGP_C57BL6NJ_T0049618.1 MGP_C57BL6NJ_G0024635.1 mouse_genomes_project 18 31616281 31675369 + MGP_C57BL6NJ_P0049618 Bin1 protein_coding protein_coding MGP_C57BL6NJ_T0049619.1 MGP_C57BL6NJ_G0024635.1 mouse_genomes_project 18 31616281 31675369 + MGP_C57BL6NJ_P0049619 Bin1 protein_coding protein_coding MGP_C57BL6NJ_T0050624.1 MGP_C57BL6NJ_G0025007.1 mouse_genomes_project 18 83293730 83371438 - MGP_C57BL6NJ_P0050624 Kcng2 protein_coding protein_coding MGP_C57BL6NJ_T0050625.1 MGP_C57BL6NJ_G0025007.1 mouse_genomes_project 18 83326670 83370520 - MGP_C57BL6NJ_P0050625 Kcng2 protein_coding protein_coding MGP_C57BL6NJ_T0050626.1 MGP_C57BL6NJ_G0025007.1 mouse_genomes_project 18 83326935 83370834 - MGP_C57BL6NJ_P0050626 Kcng2 protein_coding protein_coding MGP_C57BL6NJ_T0013685.1 MGP_C57BL6NJ_G0011730.1 mouse_genomes_project 18 94043686 94043905 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049687.1 MGP_C57BL6NJ_G0024661.1 mouse_genomes_project 18 34367624 34372758 + MGP_C57BL6NJ_P0049687 Egr1 protein_coding protein_coding MGP_C57BL6NJ_T0049688.1 MGP_C57BL6NJ_G0024661.1 mouse_genomes_project 18 34369006 34372730 + MGP_C57BL6NJ_P0049688 Egr1 protein_coding protein_coding MGP_C57BL6NJ_T0013659.1 MGP_C57BL6NJ_G0011704.1 mouse_genomes_project 18 38585597 38586449 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0049381.1 MGP_C57BL6NJ_G0024541.1 mouse_genomes_project 18 4240996 4455967 - MGP_C57BL6NJ_P0049381 Armc4 protein_coding protein_coding MGP_C57BL6NJ_T0011724.1 MGP_C57BL6NJ_G0009809.1 mouse_genomes_project 18 61163858 61164152 - Gm26028 misc_RNA misc_RNA MGP_C57BL6NJ_T0049435.1 MGP_C57BL6NJ_G0024560.1 mouse_genomes_project 18 9455773 9564715 + MGP_C57BL6NJ_P0049435 Cables1 protein_coding protein_coding MGP_C57BL6NJ_T0049436.1 MGP_C57BL6NJ_G0024560.1 mouse_genomes_project 18 9455827 9564721 + MGP_C57BL6NJ_P0049436 Cables1 protein_coding protein_coding MGP_C57BL6NJ_T0099050.1 MGP_C57BL6NJ_G0037114.1 mouse_genomes_project 18 18173208 18173306 + Gm24238 rRNA rRNA MGP_C57BL6NJ_T0010480.1 MGP_C57BL6NJ_G0008565.1 mouse_genomes_project 18 62458008 62458068 + Mir7220 miRNA miRNA MGP_C57BL6NJ_T0101425.1 MGP_C57BL6NJ_G0039471.1 mouse_genomes_project 18 82499785 82499906 - Gm25824 snoRNA snoRNA MGP_C57BL6NJ_T0050519.1 MGP_C57BL6NJ_G0024972.1 mouse_genomes_project 18 77396620 77428582 + MGP_C57BL6NJ_P0050519 Acaa2 protein_coding protein_coding MGP_C57BL6NJ_T0050538.1 MGP_C57BL6NJ_G0024982.1 mouse_genomes_project 18 79702222 79713843 + MGP_C57BL6NJ_P0050538 Ier3ip1 protein_coding protein_coding MGP_C57BL6NJ_T0050539.1 MGP_C57BL6NJ_G0024982.1 mouse_genomes_project 18 79702250 79713843 + Ier3ip1 protein_coding processed_transcript MGP_C57BL6NJ_T0050540.1 MGP_C57BL6NJ_G0024982.1 mouse_genomes_project 18 79702268 79711986 + Ier3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0050542.1 MGP_C57BL6NJ_G0024982.1 mouse_genomes_project 18 79711521 79712927 + Ier3ip1 protein_coding retained_intron MGP_C57BL6NJ_T0049989.1 MGP_C57BL6NJ_G0024784.1 mouse_genomes_project 18 42105288 42238456 + MGP_C57BL6NJ_P0049989 Sh3rf2 protein_coding protein_coding MGP_C57BL6NJ_T0049990.1 MGP_C57BL6NJ_G0024784.1 mouse_genomes_project 18 42105331 42237947 + MGP_C57BL6NJ_P0049990 Sh3rf2 protein_coding protein_coding MGP_C57BL6NJ_T0049991.1 MGP_C57BL6NJ_G0024784.1 mouse_genomes_project 18 42220106 42235622 + Sh3rf2 protein_coding processed_transcript MGP_C57BL6NJ_T0049992.1 MGP_C57BL6NJ_G0024784.1 mouse_genomes_project 18 42220194 42232636 + Sh3rf2 protein_coding processed_transcript MGP_C57BL6NJ_T0050692.1 MGP_C57BL6NJ_G0025027.1 mouse_genomes_project 18 91331810 91333629 + MGP_C57BL6NJ_P0050692 Gm5096 protein_coding protein_coding MGP_C57BL6NJ_T0007167.1 MGP_C57BL6NJ_G0005893.1 mouse_genomes_project 18 219207 255984 + Gm6225 lincRNA lincRNA MGP_C57BL6NJ_T0050494.1 MGP_C57BL6NJ_G0024965.1 mouse_genomes_project 18 76485640 76541537 - MGP_C57BL6NJ_P0050494 Mapk4 protein_coding protein_coding MGP_C57BL6NJ_T0050495.1 MGP_C57BL6NJ_G0024965.1 mouse_genomes_project 18 76485644 76630521 - MGP_C57BL6NJ_P0050495 Mapk4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050496.1 MGP_C57BL6NJ_G0024965.1 mouse_genomes_project 18 76531117 76631488 - Mapk4 protein_coding processed_transcript MGP_C57BL6NJ_T0049862.1 MGP_C57BL6NJ_G0024739.1 mouse_genomes_project 18 37214345 37220984 + MGP_C57BL6NJ_P0049862 Pcdhb22 protein_coding protein_coding MGP_C57BL6NJ_T0049863.1 MGP_C57BL6NJ_G0024739.1 mouse_genomes_project 18 37214833 37217650 + MGP_C57BL6NJ_P0049863 Pcdhb22 protein_coding protein_coding MGP_C57BL6NJ_T0010491.1 MGP_C57BL6NJ_G0008576.1 mouse_genomes_project 18 71227566 71227641 - Mir145b miRNA miRNA MGP_C57BL6NJ_T0013678.1 MGP_C57BL6NJ_G0011723.1 mouse_genomes_project 18 76890353 76890761 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100113.1 MGP_C57BL6NJ_G0038159.1 mouse_genomes_project 18 10956574 10956681 - Gm22251 snRNA snRNA MGP_C57BL6NJ_T0049934.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37926838 37952483 - MGP_C57BL6NJ_P0049934 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049935.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37929273 37943545 - MGP_C57BL6NJ_P0049935 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049936.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37937075 37950155 - MGP_C57BL6NJ_P0049936 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049937.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37937075 37952400 - MGP_C57BL6NJ_P0049937 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049938.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37943825 37950947 - MGP_C57BL6NJ_P0049938 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049939.1 MGP_C57BL6NJ_G0024768.1 mouse_genomes_project 18 37943825 37944222 - MGP_C57BL6NJ_P0049939 Pcdh1 protein_coding protein_coding MGP_C57BL6NJ_T0049402.1 MGP_C57BL6NJ_G0024548.1 mouse_genomes_project 18 7030977 7209409 + MGP_C57BL6NJ_P0049402 Colec12 protein_coding protein_coding MGP_C57BL6NJ_T0011731.1 MGP_C57BL6NJ_G0009816.1 mouse_genomes_project 18 88137915 88138218 + Gm22819 misc_RNA misc_RNA MGP_C57BL6NJ_T0003966.1 MGP_C57BL6NJ_G0003553.1 mouse_genomes_project 18 38817929 38818487 - Gm15334 antisense antisense MGP_C57BL6NJ_T0049841.1 MGP_C57BL6NJ_G0024720.1 mouse_genomes_project 18 36991079 36994986 + MGP_C57BL6NJ_P0049841 Pcdhb3 protein_coding protein_coding MGP_C57BL6NJ_T0049784.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36304819 36309830 - MGP_C57BL6NJ_P0049784 Sra1 protein_coding protein_coding MGP_C57BL6NJ_T0049785.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36305384 36308914 - MGP_C57BL6NJ_P0049785 Sra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049786.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36305410 36308934 - Sra1 protein_coding retained_intron MGP_C57BL6NJ_T0049787.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36305567 36308913 - MGP_C57BL6NJ_P0049787 Sra1 protein_coding protein_coding MGP_C57BL6NJ_T0049788.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36308449 36308904 - Sra1 protein_coding retained_intron MGP_C57BL6NJ_T0049789.1 MGP_C57BL6NJ_G0024689.1 mouse_genomes_project 18 36309793 36317594 - MGP_C57BL6NJ_P0049789 Sra1 protein_coding protein_coding MGP_C57BL6NJ_T0102984.1 MGP_C57BL6NJ_G0040778.1 mouse_genomes_project 18 36687762 36688549 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0049624.1 MGP_C57BL6NJ_G0024638.1 mouse_genomes_project 18 32110893 32141648 + MGP_C57BL6NJ_P0049624 Wdr36 protein_coding protein_coding MGP_C57BL6NJ_T0049625.1 MGP_C57BL6NJ_G0024638.1 mouse_genomes_project 18 32110893 32141718 + MGP_C57BL6NJ_P0049625 Wdr36 protein_coding protein_coding MGP_C57BL6NJ_T0049522.1 MGP_C57BL6NJ_G0024593.1 mouse_genomes_project 18 19589679 19617819 + MGP_C57BL6NJ_P0049522 Mep1b protein_coding protein_coding MGP_C57BL6NJ_T0049836.1 MGP_C57BL6NJ_G0024716.1 mouse_genomes_project 18 36767868 36867648 + MGP_C57BL6NJ_P0049836 Pcdhac1 protein_coding protein_coding MGP_C57BL6NJ_T0050247.1 MGP_C57BL6NJ_G0024891.1 mouse_genomes_project 18 62736361 62823411 + MGP_C57BL6NJ_P0050247 Pde6a protein_coding protein_coding MGP_C57BL6NJ_T0050248.1 MGP_C57BL6NJ_G0024891.1 mouse_genomes_project 18 62806961 62823411 + MGP_C57BL6NJ_P0050248 Pde6a protein_coding protein_coding MGP_C57BL6NJ_T0050088.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50480086 50620708 + MGP_C57BL6NJ_P0050088 Dmxl1 protein_coding protein_coding MGP_C57BL6NJ_T0050089.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50480413 50621929 + MGP_C57BL6NJ_P0050089 Dmxl1 protein_coding protein_coding MGP_C57BL6NJ_T0050090.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50480506 50621929 + MGP_C57BL6NJ_P0050090 Dmxl1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050091.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50544706 50586195 + Dmxl1 protein_coding retained_intron MGP_C57BL6NJ_T0050092.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50604443 50610737 + Dmxl1 protein_coding retained_intron MGP_C57BL6NJ_T0050093.1 MGP_C57BL6NJ_G0024831.1 mouse_genomes_project 18 50612000 50615667 + Dmxl1 protein_coding retained_intron MGP_C57BL6NJ_T0101400.1 MGP_C57BL6NJ_G0039446.1 mouse_genomes_project 18 25303364 25303495 + Gm23674 snoRNA snoRNA MGP_C57BL6NJ_T0050347.1 MGP_C57BL6NJ_G0024925.1 mouse_genomes_project 18 67790025 67803707 + MGP_C57BL6NJ_P0050347 Grp protein_coding protein_coding MGP_C57BL6NJ_T0050348.1 MGP_C57BL6NJ_G0024925.1 mouse_genomes_project 18 67790690 67797459 + MGP_C57BL6NJ_P0050348 Grp protein_coding protein_coding MGP_C57BL6NJ_T0050349.1 MGP_C57BL6NJ_G0024925.1 mouse_genomes_project 18 67790700 67803706 + MGP_C57BL6NJ_P0050349 Grp protein_coding protein_coding MGP_C57BL6NJ_T0049644.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33767940 33773440 + Srp19 protein_coding processed_transcript MGP_C57BL6NJ_T0049645.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33768216 33773616 + Srp19 protein_coding processed_transcript MGP_C57BL6NJ_T0049646.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33768238 33773646 + Srp19 protein_coding retained_intron MGP_C57BL6NJ_T0049647.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33768238 33773694 + MGP_C57BL6NJ_P0049647 Srp19 protein_coding protein_coding MGP_C57BL6NJ_T0049648.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33768251 33773516 + MGP_C57BL6NJ_P0049648 Srp19 protein_coding protein_coding MGP_C57BL6NJ_T0049649.1 MGP_C57BL6NJ_G0024645.1 mouse_genomes_project 18 33768269 33773648 + MGP_C57BL6NJ_P0049649 Srp19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050267.1 MGP_C57BL6NJ_G0024897.1 mouse_genomes_project 18 63286468 63300330 - MGP_C57BL6NJ_P0050267 Grpel2 protein_coding protein_coding MGP_C57BL6NJ_T0003974.1 MGP_C57BL6NJ_G0003559.1 mouse_genomes_project 18 57949612 57982345 + Gm15345 antisense antisense MGP_C57BL6NJ_T0049880.1 MGP_C57BL6NJ_G0024751.1 mouse_genomes_project 18 37423028 37559699 + MGP_C57BL6NJ_P0049880 Pcdhgb4 protein_coding protein_coding MGP_C57BL6NJ_T0049881.1 MGP_C57BL6NJ_G0024751.1 mouse_genomes_project 18 37423042 37432015 + Pcdhgb4 protein_coding processed_transcript MGP_C57BL6NJ_T0050503.1 MGP_C57BL6NJ_G0024970.1 mouse_genomes_project 18 76868977 76949141 + MGP_C57BL6NJ_P0050503 Cfap53 protein_coding protein_coding MGP_C57BL6NJ_T0050504.1 MGP_C57BL6NJ_G0024970.1 mouse_genomes_project 18 76869009 76949139 + MGP_C57BL6NJ_P0050504 Cfap53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050505.1 MGP_C57BL6NJ_G0024970.1 mouse_genomes_project 18 76869049 76887206 + MGP_C57BL6NJ_P0050505 Cfap53 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050506.1 MGP_C57BL6NJ_G0024970.1 mouse_genomes_project 18 76881611 76887219 + Cfap53 protein_coding processed_transcript MGP_C57BL6NJ_T0050507.1 MGP_C57BL6NJ_G0024970.1 mouse_genomes_project 18 76938143 76949085 + Cfap53 protein_coding processed_transcript MGP_C57BL6NJ_T0013674.1 MGP_C57BL6NJ_G0011719.1 mouse_genomes_project 18 58320336 58320513 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011728.1 MGP_C57BL6NJ_G0009813.1 mouse_genomes_project 18 76159526 76159623 + Gm26438 misc_RNA misc_RNA MGP_C57BL6NJ_T0050310.1 MGP_C57BL6NJ_G0024915.1 mouse_genomes_project 18 66119054 66183982 + MGP_C57BL6NJ_P0050310 Onecut2 protein_coding protein_coding MGP_C57BL6NJ_T0050311.1 MGP_C57BL6NJ_G0024915.1 mouse_genomes_project 18 66119054 66183984 + MGP_C57BL6NJ_P0050311 Onecut2 protein_coding protein_coding MGP_C57BL6NJ_T0050363.1 MGP_C57BL6NJ_G0024931.1 mouse_genomes_project 18 68885568 68888326 - MGP_C57BL6NJ_P0050363 Mc4r protein_coding protein_coding MGP_C57BL6NJ_T0100144.1 MGP_C57BL6NJ_G0038190.1 mouse_genomes_project 18 89758502 89758609 + Gm25453 snRNA snRNA MGP_C57BL6NJ_T0049510.1 MGP_C57BL6NJ_G0024586.1 mouse_genomes_project 18 18946261 18983189 + MGP_C57BL6NJ_P0049510 Dsg3 protein_coding protein_coding MGP_C57BL6NJ_T0049850.1 MGP_C57BL6NJ_G0024727.1 mouse_genomes_project 18 37102741 37106365 + MGP_C57BL6NJ_P0049850 Pcdhb10 protein_coding protein_coding MGP_C57BL6NJ_T0050058.1 MGP_C57BL6NJ_G0024817.1 mouse_genomes_project 18 46651399 46686822 - MGP_C57BL6NJ_P0050058 Ccdc112 protein_coding protein_coding MGP_C57BL6NJ_T0050613.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83245424 83291822 + MGP_C57BL6NJ_P0050613 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050614.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83245474 83282570 + MGP_C57BL6NJ_P0050614 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050615.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83247257 83291910 + MGP_C57BL6NJ_P0050615 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050616.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83247848 83283256 + MGP_C57BL6NJ_P0050616 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050617.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248296 83291901 + MGP_C57BL6NJ_P0050617 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050618.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248300 83274333 + Pqlc1 protein_coding retained_intron MGP_C57BL6NJ_T0050619.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248318 83291909 + MGP_C57BL6NJ_P0050619 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050620.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248319 83272513 + Pqlc1 protein_coding retained_intron MGP_C57BL6NJ_T0050621.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248319 83291899 + MGP_C57BL6NJ_P0050621 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050622.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83248330 83291897 + MGP_C57BL6NJ_P0050622 Pqlc1 protein_coding protein_coding MGP_C57BL6NJ_T0050623.1 MGP_C57BL6NJ_G0025006.1 mouse_genomes_project 18 83257053 83257699 + Pqlc1 protein_coding processed_transcript MGP_C57BL6NJ_T0049404.1 MGP_C57BL6NJ_G0024550.1 mouse_genomes_project 18 7297769 7338446 + MGP_C57BL6NJ_P0049404 Thoc1 protein_coding protein_coding MGP_C57BL6NJ_T0101417.1 MGP_C57BL6NJ_G0039463.1 mouse_genomes_project 18 65263429 65263573 + Gm22210 snoRNA snoRNA MGP_C57BL6NJ_T0050269.1 MGP_C57BL6NJ_G0024899.1 mouse_genomes_project 18 63380384 63501532 - MGP_C57BL6NJ_P0050269 Ablim3 protein_coding protein_coding MGP_C57BL6NJ_T0050270.1 MGP_C57BL6NJ_G0024899.1 mouse_genomes_project 18 63380384 63501560 - MGP_C57BL6NJ_P0050270 Ablim3 protein_coding protein_coding MGP_C57BL6NJ_T0050137.1 MGP_C57BL6NJ_G0024849.1 mouse_genomes_project 18 54635871 54698420 - MGP_C57BL6NJ_P0050137 Cep120 protein_coding protein_coding MGP_C57BL6NJ_T0050154.1 MGP_C57BL6NJ_G0024855.1 mouse_genomes_project 18 57729179 57735596 + MGP_C57BL6NJ_P0050154 Tex43 protein_coding protein_coding MGP_C57BL6NJ_T0050155.1 MGP_C57BL6NJ_G0024855.1 mouse_genomes_project 18 57729208 57733532 + MGP_C57BL6NJ_P0050155 Tex43 protein_coding protein_coding MGP_C57BL6NJ_T0050156.1 MGP_C57BL6NJ_G0024855.1 mouse_genomes_project 18 57729218 57735526 + MGP_C57BL6NJ_P0050156 Tex43 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050157.1 MGP_C57BL6NJ_G0024855.1 mouse_genomes_project 18 57729255 57735596 + MGP_C57BL6NJ_P0050157 Tex43 protein_coding protein_coding MGP_C57BL6NJ_T0049679.1 MGP_C57BL6NJ_G0024655.1 mouse_genomes_project 18 34177868 34224268 - MGP_C57BL6NJ_P0049679 Gfra3 protein_coding protein_coding MGP_C57BL6NJ_T0013663.1 MGP_C57BL6NJ_G0011708.1 mouse_genomes_project 18 45375102 45376091 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0013677.1 MGP_C57BL6NJ_G0011722.1 mouse_genomes_project 18 71490731 71491566 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0011719.1 MGP_C57BL6NJ_G0009804.1 mouse_genomes_project 18 40910884 40911158 + Gm22483 misc_RNA misc_RNA MGP_C57BL6NJ_T0050236.1 MGP_C57BL6NJ_G0024886.1 mouse_genomes_project 18 62527892 62545027 - MGP_C57BL6NJ_P0050236 Cdx1 protein_coding protein_coding MGP_C57BL6NJ_T0049557.1 MGP_C57BL6NJ_G0024605.1 mouse_genomes_project 18 22762580 22780627 - MGP_C57BL6NJ_P0049557 Ino80c protein_coding protein_coding MGP_C57BL6NJ_T0049558.1 MGP_C57BL6NJ_G0024605.1 mouse_genomes_project 18 22762586 22780779 - MGP_C57BL6NJ_P0049558 Ino80c protein_coding protein_coding MGP_C57BL6NJ_T0049559.1 MGP_C57BL6NJ_G0024605.1 mouse_genomes_project 18 22764203 22780661 - MGP_C57BL6NJ_P0049559 Ino80c protein_coding protein_coding MGP_C57BL6NJ_T0010477.1 MGP_C57BL6NJ_G0008562.1 mouse_genomes_project 18 61000097 61000203 + Mir6355 miRNA miRNA MGP_C57BL6NJ_T0049659.1 MGP_C57BL6NJ_G0024651.1 mouse_genomes_project 18 34052728 34078595 - MGP_C57BL6NJ_P0049659 4933408B17Rik protein_coding protein_coding MGP_C57BL6NJ_T0049660.1 MGP_C57BL6NJ_G0024651.1 mouse_genomes_project 18 34052827 34078472 - MGP_C57BL6NJ_P0049660 4933408B17Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0049524.1 MGP_C57BL6NJ_G0024595.1 mouse_genomes_project 18 20087340 20204565 - MGP_C57BL6NJ_P0049524 Klhl14 protein_coding protein_coding MGP_C57BL6NJ_T0049525.1 MGP_C57BL6NJ_G0024595.1 mouse_genomes_project 18 20087342 20206956 - MGP_C57BL6NJ_P0049525 Klhl14 protein_coding protein_coding MGP_C57BL6NJ_T0011712.1 MGP_C57BL6NJ_G0009797.1 mouse_genomes_project 18 23467085 23467362 + Gm24294 misc_RNA misc_RNA MGP_C57BL6NJ_T0010496.1 MGP_C57BL6NJ_G0008581.1 mouse_genomes_project 18 85075851 85075922 - Mir5127 miRNA miRNA MGP_C57BL6NJ_T0011715.1 MGP_C57BL6NJ_G0009800.1 mouse_genomes_project 18 36455553 36455696 + Vaultrc5 misc_RNA misc_RNA MGP_C57BL6NJ_T0049399.1 MGP_C57BL6NJ_G0024545.1 mouse_genomes_project 18 6585405 6589608 - MGP_C57BL6NJ_P0049399 Gjd4 protein_coding protein_coding MGP_C57BL6NJ_T0007168.1 MGP_C57BL6NJ_G0005894.1 mouse_genomes_project 18 1355044 1361356 - Gm26865 lincRNA lincRNA MGP_C57BL6NJ_T0049401.1 MGP_C57BL6NJ_G0024547.1 mouse_genomes_project 18 6930026 6936781 - MGP_C57BL6NJ_P0049401 Cetn1 protein_coding protein_coding MGP_C57BL6NJ_T0049890.1 MGP_C57BL6NJ_G0024758.1 mouse_genomes_project 18 37461076 37559702 + MGP_C57BL6NJ_P0049890 Pcdhga11 protein_coding protein_coding MGP_C57BL6NJ_T0050200.1 MGP_C57BL6NJ_G0024877.1 mouse_genomes_project 18 62051676 62068500 - MGP_C57BL6NJ_P0050200 Myoz3 protein_coding protein_coding MGP_C57BL6NJ_T0050188.1 MGP_C57BL6NJ_G0024871.1 mouse_genomes_project 18 61723990 61728754 - MGP_C57BL6NJ_P0050188 Gm4841 protein_coding protein_coding MGP_C57BL6NJ_T0003987.1 MGP_C57BL6NJ_G0003567.1 mouse_genomes_project 18 84008658 84009778 + Gm27239 antisense antisense MGP_C57BL6NJ_T0007180.1 MGP_C57BL6NJ_G0005902.1 mouse_genomes_project 18 30587183 30596882 + Gm26658 lincRNA lincRNA MGP_C57BL6NJ_T0049829.1 MGP_C57BL6NJ_G0024711.1 mouse_genomes_project 18 36663454 36867648 + MGP_C57BL6NJ_P0049829 protein_coding protein_coding MGP_C57BL6NJ_T0049896.1 MGP_C57BL6NJ_G0024761.1 mouse_genomes_project 18 37529758 37559702 + MGP_C57BL6NJ_P0049896 Pcdhga8 protein_coding protein_coding MGP_C57BL6NJ_T0049897.1 MGP_C57BL6NJ_G0024761.1 mouse_genomes_project 18 37530080 37559702 + MGP_C57BL6NJ_P0049897 Pcdhga8 protein_coding protein_coding MGP_C57BL6NJ_T0049898.1 MGP_C57BL6NJ_G0024761.1 mouse_genomes_project 18 37530135 37533235 + Pcdhga8 protein_coding retained_intron MGP_C57BL6NJ_T0049999.1 MGP_C57BL6NJ_G0024790.1 mouse_genomes_project 18 42615170 42689502 + MGP_C57BL6NJ_P0049999 Tcerg1 protein_coding protein_coding MGP_C57BL6NJ_T0050000.1 MGP_C57BL6NJ_G0024790.1 mouse_genomes_project 18 42615183 42688795 + MGP_C57BL6NJ_P0050000 Tcerg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050069.1 MGP_C57BL6NJ_G0024824.1 mouse_genomes_project 18 47161392 47210430 + MGP_C57BL6NJ_P0050069 Ap3s1 protein_coding protein_coding MGP_C57BL6NJ_T0050070.1 MGP_C57BL6NJ_G0024824.1 mouse_genomes_project 18 47161488 47210334 + MGP_C57BL6NJ_P0050070 Ap3s1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007214.1 MGP_C57BL6NJ_G0005928.1 mouse_genomes_project 18 76580857 76583039 + D730045A05Rik lincRNA lincRNA MGP_C57BL6NJ_T0049738.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35262468 35271930 - MGP_C57BL6NJ_P0049738 Ecscr protein_coding protein_coding MGP_C57BL6NJ_T0049739.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35262468 35271099 - MGP_C57BL6NJ_P0049739 Ecscr protein_coding protein_coding MGP_C57BL6NJ_T0049740.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35262655 35266673 - MGP_C57BL6NJ_P0049740 Ecscr protein_coding protein_coding MGP_C57BL6NJ_T0049741.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35263142 35266673 - MGP_C57BL6NJ_P0049741 Ecscr protein_coding protein_coding MGP_C57BL6NJ_T0049742.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35266630 35267270 - Ecscr protein_coding processed_transcript MGP_C57BL6NJ_T0049743.1 MGP_C57BL6NJ_G0024676.1 mouse_genomes_project 18 35266897 35271867 - Ecscr protein_coding processed_transcript MGP_C57BL6NJ_T0050303.1 MGP_C57BL6NJ_G0024912.1 mouse_genomes_project 18 65393692 65426244 - MGP_C57BL6NJ_P0050303 Txnl1 protein_coding protein_coding MGP_C57BL6NJ_T0050187.1 MGP_C57BL6NJ_G0024870.1 mouse_genomes_project 18 61664971 61697157 + MGP_C57BL6NJ_P0050187 Gm4951 protein_coding protein_coding MGP_C57BL6NJ_T0100110.1 MGP_C57BL6NJ_G0038156.1 mouse_genomes_project 18 5062566 5062673 + Gm24292 snRNA snRNA MGP_C57BL6NJ_T0050285.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64645950 64668949 + MGP_C57BL6NJ_P0050285 Napg protein_coding protein_coding MGP_C57BL6NJ_T0050286.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64645975 64648768 + Napg protein_coding retained_intron MGP_C57BL6NJ_T0050287.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64646015 64666431 + MGP_C57BL6NJ_P0050287 Napg protein_coding protein_coding MGP_C57BL6NJ_T0050288.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64646036 64650900 + Napg protein_coding retained_intron MGP_C57BL6NJ_T0050289.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64648352 64651128 + Napg protein_coding retained_intron MGP_C57BL6NJ_T0050290.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64654070 64659946 + Napg protein_coding processed_transcript MGP_C57BL6NJ_T0050291.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64654153 64664088 + Napg protein_coding retained_intron MGP_C57BL6NJ_T0050292.1 MGP_C57BL6NJ_G0024910.1 mouse_genomes_project 18 64656325 64664537 + Napg protein_coding processed_transcript MGP_C57BL6NJ_T0003956.1 MGP_C57BL6NJ_G0003543.1 mouse_genomes_project 18 22395340 22397199 - Gm15972 antisense antisense MGP_C57BL6NJ_T0049731.1 MGP_C57BL6NJ_G0024672.1 mouse_genomes_project 18 35192073 35196961 - MGP_C57BL6NJ_P0049731 Prob1 protein_coding protein_coding MGP_C57BL6NJ_T0049732.1 MGP_C57BL6NJ_G0024672.1 mouse_genomes_project 18 35192077 35193729 - Prob1 protein_coding processed_transcript MGP_C57BL6NJ_T0049733.1 MGP_C57BL6NJ_G0024672.1 mouse_genomes_project 18 35193889 35196910 - MGP_C57BL6NJ_P0049733 Prob1 protein_coding protein_coding MGP_C57BL6NJ_T0049543.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22397226 22419577 + Mapre2 protein_coding retained_intron MGP_C57BL6NJ_T0049544.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22397232 22527411 + MGP_C57BL6NJ_P0049544 Mapre2 protein_coding protein_coding MGP_C57BL6NJ_T0049545.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22397286 22503468 + MGP_C57BL6NJ_P0049545 Mapre2 protein_coding protein_coding MGP_C57BL6NJ_T0049546.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22398618 22536079 + MGP_C57BL6NJ_P0049546 Mapre2 protein_coding protein_coding MGP_C57BL6NJ_T0049547.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22398641 22440351 + Mapre2 protein_coding processed_transcript MGP_C57BL6NJ_T0049548.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22446346 22476606 + Mapre2 protein_coding retained_intron MGP_C57BL6NJ_T0049549.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22446429 22537577 + MGP_C57BL6NJ_P0049549 Mapre2 protein_coding protein_coding MGP_C57BL6NJ_T0049550.1 MGP_C57BL6NJ_G0024600.1 mouse_genomes_project 18 22446429 22534646 + MGP_C57BL6NJ_P0049550 Mapre2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101412.1 MGP_C57BL6NJ_G0039458.1 mouse_genomes_project 18 46284722 46284849 + Gm26262 snoRNA snoRNA MGP_C57BL6NJ_T0003950.1 MGP_C57BL6NJ_G0003540.1 mouse_genomes_project 18 14762589 14763535 + Gm15485 antisense antisense MGP_C57BL6NJ_T0049633.1 MGP_C57BL6NJ_G0024642.1 mouse_genomes_project 18 32804478 32810934 + MGP_C57BL6NJ_P0049633 Gm10549 protein_coding protein_coding MGP_C57BL6NJ_T0010498.1 MGP_C57BL6NJ_G0008583.1 mouse_genomes_project 18 92619169 92619250 + Mir6359 miRNA miRNA MGP_C57BL6NJ_T0007183.1 MGP_C57BL6NJ_G0005905.1 mouse_genomes_project 18 31364985 31371937 + Gm26717 lincRNA lincRNA MGP_C57BL6NJ_T0050362.1 MGP_C57BL6NJ_G0024930.1 mouse_genomes_project 18 68442122 68449069 + MGP_C57BL6NJ_P0050362 Pmaip1 protein_coding protein_coding MGP_C57BL6NJ_T0101411.1 MGP_C57BL6NJ_G0039457.1 mouse_genomes_project 18 37408415 37408506 + Gm24401 snoRNA snoRNA MGP_C57BL6NJ_T0013652.1 MGP_C57BL6NJ_G0011697.1 mouse_genomes_project 18 35325288 35325639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050023.1 MGP_C57BL6NJ_G0024801.1 mouse_genomes_project 18 44185700 44251352 + MGP_C57BL6NJ_P0050023 Spink5 protein_coding protein_coding MGP_C57BL6NJ_T0050176.1 MGP_C57BL6NJ_G0024865.1 mouse_genomes_project 18 59892271 59955803 + MGP_C57BL6NJ_P0050176 Slc27a6 protein_coding protein_coding MGP_C57BL6NJ_T0049837.1 MGP_C57BL6NJ_G0024717.1 mouse_genomes_project 18 36823462 36867648 + MGP_C57BL6NJ_P0049837 Pcdhac2 protein_coding protein_coding MGP_C57BL6NJ_T0050321.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67472255 67587890 + MGP_C57BL6NJ_P0050321 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050322.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67472407 67515341 + MGP_C57BL6NJ_P0050322 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050323.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67473112 67515330 + MGP_C57BL6NJ_P0050323 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050324.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67473118 67514898 + MGP_C57BL6NJ_P0050324 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050325.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67473767 67517156 + MGP_C57BL6NJ_P0050325 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050326.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474264 67515477 + MGP_C57BL6NJ_P0050326 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050327.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474319 67514905 + MGP_C57BL6NJ_P0050327 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050328.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474443 67587388 + MGP_C57BL6NJ_P0050328 Zfp532 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050329.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474551 67587387 + MGP_C57BL6NJ_P0050329 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050330.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474638 67515104 + MGP_C57BL6NJ_P0050330 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050331.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67474963 67587381 + MGP_C57BL6NJ_P0050331 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050332.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67475442 67515070 + MGP_C57BL6NJ_P0050332 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050333.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67475964 67515015 + MGP_C57BL6NJ_P0050333 Zfp532 protein_coding protein_coding MGP_C57BL6NJ_T0050334.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67511423 67516748 + Zfp532 protein_coding retained_intron MGP_C57BL6NJ_T0050335.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67517061 67580905 + Zfp532 protein_coding retained_intron MGP_C57BL6NJ_T0050336.1 MGP_C57BL6NJ_G0024922.1 mouse_genomes_project 18 67538859 67584107 + Zfp532 protein_coding processed_transcript MGP_C57BL6NJ_T0100122.1 MGP_C57BL6NJ_G0038168.1 mouse_genomes_project 18 43216068 43216175 - Gm22264 snRNA snRNA MGP_C57BL6NJ_T0007176.1 MGP_C57BL6NJ_G0005901.1 mouse_genomes_project 18 15074898 15199783 + 1700001G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007177.1 MGP_C57BL6NJ_G0005901.1 mouse_genomes_project 18 15074923 15105515 + 1700001G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007178.1 MGP_C57BL6NJ_G0005901.1 mouse_genomes_project 18 15092595 15199783 + 1700001G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007179.1 MGP_C57BL6NJ_G0005901.1 mouse_genomes_project 18 15188030 15199738 + 1700001G01Rik lincRNA lincRNA MGP_C57BL6NJ_T0050283.1 MGP_C57BL6NJ_G0024909.1 mouse_genomes_project 18 64588210 64619692 + MGP_C57BL6NJ_P0050283 Apcdd1 protein_coding protein_coding MGP_C57BL6NJ_T0050284.1 MGP_C57BL6NJ_G0024909.1 mouse_genomes_project 18 64588212 64618961 + MGP_C57BL6NJ_P0050284 Apcdd1 protein_coding protein_coding MGP_C57BL6NJ_T0050242.1 MGP_C57BL6NJ_G0024889.1 mouse_genomes_project 18 62644286 62689995 - MGP_C57BL6NJ_P0050242 Hmgxb3 protein_coding protein_coding MGP_C57BL6NJ_T0050028.1 MGP_C57BL6NJ_G0024805.1 mouse_genomes_project 18 44393493 44396939 - MGP_C57BL6NJ_P0050028 Gm10267 protein_coding protein_coding MGP_C57BL6NJ_T0050029.1 MGP_C57BL6NJ_G0024805.1 mouse_genomes_project 18 44393502 44396395 - MGP_C57BL6NJ_P0050029 Gm10267 protein_coding protein_coding MGP_C57BL6NJ_T0050016.1 MGP_C57BL6NJ_G0024796.1 mouse_genomes_project 18 43666180 43668740 - MGP_C57BL6NJ_P0050016 protein_coding protein_coding MGP_C57BL6NJ_T0013660.1 MGP_C57BL6NJ_G0011705.1 mouse_genomes_project 18 39180327 39180691 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0100118.1 MGP_C57BL6NJ_G0038164.1 mouse_genomes_project 18 32311517 32311621 - Gm22814 snRNA snRNA MGP_C57BL6NJ_T0011705.1 MGP_C57BL6NJ_G0009790.1 mouse_genomes_project 18 767785 768108 + Gm24632 misc_RNA misc_RNA MGP_C57BL6NJ_T0049854.1 MGP_C57BL6NJ_G0024731.1 mouse_genomes_project 18 37140777 37149639 + MGP_C57BL6NJ_P0049854 Pcdhb14 protein_coding protein_coding MGP_C57BL6NJ_T0050193.1 MGP_C57BL6NJ_G0024875.1 mouse_genomes_project 18 61999545 62032183 + MGP_C57BL6NJ_P0050193 Dctn4 protein_coding protein_coding MGP_C57BL6NJ_T0050194.1 MGP_C57BL6NJ_G0024875.1 mouse_genomes_project 18 61999555 62032186 + MGP_C57BL6NJ_P0050194 Dctn4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050071.1 MGP_C57BL6NJ_G0024825.1 mouse_genomes_project 18 47288880 47352917 + MGP_C57BL6NJ_P0050071 Lvrn protein_coding protein_coding MGP_C57BL6NJ_T0050073.1 MGP_C57BL6NJ_G0024827.1 mouse_genomes_project 18 47412951 47547679 + MGP_C57BL6NJ_P0050073 Commd10 protein_coding protein_coding MGP_C57BL6NJ_T0101415.1 MGP_C57BL6NJ_G0039461.1 mouse_genomes_project 18 57306976 57307111 + Gm23555 snoRNA snoRNA MGP_C57BL6NJ_T0050375.1 MGP_C57BL6NJ_G0024942.1 mouse_genomes_project 18 69759421 69826958 - MGP_C57BL6NJ_P0050375 Ptpn2 protein_coding protein_coding MGP_C57BL6NJ_T0050376.1 MGP_C57BL6NJ_G0024942.1 mouse_genomes_project 18 69759422 69826973 - MGP_C57BL6NJ_P0050376 Ptpn2 protein_coding protein_coding MGP_C57BL6NJ_T0050377.1 MGP_C57BL6NJ_G0024942.1 mouse_genomes_project 18 69765116 69826980 - MGP_C57BL6NJ_P0050377 Ptpn2 protein_coding protein_coding MGP_C57BL6NJ_T0050378.1 MGP_C57BL6NJ_G0024942.1 mouse_genomes_project 18 69769751 69785665 - Ptpn2 protein_coding processed_transcript MGP_C57BL6NJ_T0101407.1 MGP_C57BL6NJ_G0039453.1 mouse_genomes_project 18 34448700 34448767 - Gm22200 snoRNA snoRNA MGP_C57BL6NJ_T0007172.1 MGP_C57BL6NJ_G0005898.1 mouse_genomes_project 18 8474698 8477099 - 1010001N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0007173.1 MGP_C57BL6NJ_G0005898.1 mouse_genomes_project 18 8475542 8478177 - 1010001N08Rik lincRNA lincRNA MGP_C57BL6NJ_T0050579.1 MGP_C57BL6NJ_G0024991.1 mouse_genomes_project 18 80619252 80631289 - MGP_C57BL6NJ_P0050579 Haus1 protein_coding protein_coding MGP_C57BL6NJ_T0049403.1 MGP_C57BL6NJ_G0024549.1 mouse_genomes_project 18 7049639 7050113 - MGP_C57BL6NJ_P0049403 Gm17430 protein_coding protein_coding MGP_C57BL6NJ_T0010489.1 MGP_C57BL6NJ_G0008574.1 mouse_genomes_project 18 70397173 70397227 - Mir7219 miRNA miRNA MGP_C57BL6NJ_T0049866.1 MGP_C57BL6NJ_G0024742.1 mouse_genomes_project 18 37355860 37559702 + MGP_C57BL6NJ_P0049866 Pcdhga1 protein_coding protein_coding MGP_C57BL6NJ_T0049867.1 MGP_C57BL6NJ_G0024742.1 mouse_genomes_project 18 37355860 37359107 + MGP_C57BL6NJ_P0049867 Pcdhga1 protein_coding protein_coding MGP_C57BL6NJ_T0100141.1 MGP_C57BL6NJ_G0038187.1 mouse_genomes_project 18 85428437 85428567 - Gm25060 snRNA snRNA MGP_C57BL6NJ_T0050151.1 MGP_C57BL6NJ_G0024854.1 mouse_genomes_project 18 57701411 57728019 + MGP_C57BL6NJ_P0050151 Phax protein_coding protein_coding MGP_C57BL6NJ_T0050152.1 MGP_C57BL6NJ_G0024854.1 mouse_genomes_project 18 57701561 57719909 + MGP_C57BL6NJ_P0050152 Phax protein_coding protein_coding MGP_C57BL6NJ_T0050153.1 MGP_C57BL6NJ_G0024854.1 mouse_genomes_project 18 57711469 57728542 + MGP_C57BL6NJ_P0050153 Phax protein_coding protein_coding MGP_C57BL6NJ_T0007242.1 MGP_C57BL6NJ_G0005948.1 mouse_genomes_project 19 21836924 21879921 - C330002G04Rik lincRNA lincRNA MGP_C57BL6NJ_T0051975.1 MGP_C57BL6NJ_G0025454.1 mouse_genomes_project 19 31306991 31398832 + MGP_C57BL6NJ_P0051975 A1cf protein_coding protein_coding MGP_C57BL6NJ_T0010542.1 MGP_C57BL6NJ_G0008627.1 mouse_genomes_project 19 45417945 45418069 + Mir6405 miRNA miRNA MGP_C57BL6NJ_T0050879.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1218089 1315057 - MGP_C57BL6NJ_P0050879 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050880.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1219840 1313926 - MGP_C57BL6NJ_P0050880 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050881.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1223764 1226955 - MGP_C57BL6NJ_P0050881 Kdm2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050882.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1224688 1227210 - Kdm2a protein_coding retained_intron MGP_C57BL6NJ_T0050883.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1229312 1239456 - MGP_C57BL6NJ_P0050883 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050884.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1234645 1239374 - MGP_C57BL6NJ_P0050884 Kdm2a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050885.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1246797 1313929 - MGP_C57BL6NJ_P0050885 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050886.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1254759 1313925 - Kdm2a protein_coding retained_intron MGP_C57BL6NJ_T0050887.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1256749 1270472 - MGP_C57BL6NJ_P0050887 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050888.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1257166 1313917 - Kdm2a protein_coding retained_intron MGP_C57BL6NJ_T0050889.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1305376 1313926 - MGP_C57BL6NJ_P0050889 Kdm2a protein_coding protein_coding MGP_C57BL6NJ_T0050890.1 MGP_C57BL6NJ_G0025076.1 mouse_genomes_project 19 1309318 1313944 - Kdm2a protein_coding retained_intron MGP_C57BL6NJ_T0010534.1 MGP_C57BL6NJ_G0008619.1 mouse_genomes_project 19 34751941 34752015 + Mir1950 miRNA miRNA MGP_C57BL6NJ_T0051085.1 MGP_C57BL6NJ_G0025148.1 mouse_genomes_project 19 3048432 3071235 - MGP_C57BL6NJ_P0051085 Slc22a20 protein_coding protein_coding MGP_C57BL6NJ_T0050993.1 MGP_C57BL6NJ_G0025120.1 mouse_genomes_project 19 2481617 2482226 - MGP_C57BL6NJ_P0050993 Ccdc85b protein_coding protein_coding MGP_C57BL6NJ_T0100160.1 MGP_C57BL6NJ_G0038206.1 mouse_genomes_project 19 37233112 37233215 - Gm25268 snRNA snRNA MGP_C57BL6NJ_T0052572.1 MGP_C57BL6NJ_G0025663.1 mouse_genomes_project 19 55140902 55347587 + MGP_C57BL6NJ_P0052572 Rbm20 protein_coding protein_coding MGP_C57BL6NJ_T0052573.1 MGP_C57BL6NJ_G0025663.1 mouse_genomes_project 19 55140902 55324266 + MGP_C57BL6NJ_P0052573 Rbm20 protein_coding protein_coding MGP_C57BL6NJ_T0052574.1 MGP_C57BL6NJ_G0025663.1 mouse_genomes_project 19 55272835 55292978 + Rbm20 protein_coding processed_transcript MGP_C57BL6NJ_T0052575.1 MGP_C57BL6NJ_G0025663.1 mouse_genomes_project 19 55323712 55347587 + MGP_C57BL6NJ_P0052575 Rbm20 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050813.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 967794 981758 + MGP_C57BL6NJ_P0050813 Pitpnm1 protein_coding protein_coding MGP_C57BL6NJ_T0050814.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 967842 981758 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050815.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 968065 972722 + MGP_C57BL6NJ_P0050815 Pitpnm1 protein_coding protein_coding MGP_C57BL6NJ_T0050816.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 968418 981758 + MGP_C57BL6NJ_P0050816 Pitpnm1 protein_coding protein_coding MGP_C57BL6NJ_T0050817.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 975996 977700 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050818.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 976544 980010 + Pitpnm1 protein_coding processed_transcript MGP_C57BL6NJ_T0050819.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 977440 978527 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050820.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 978592 979817 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050821.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 978953 980164 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050822.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 979721 981408 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0050823.1 MGP_C57BL6NJ_G0025060.1 mouse_genomes_project 19 980112 981758 + Pitpnm1 protein_coding retained_intron MGP_C57BL6NJ_T0052438.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 46958760 47114280 + MGP_C57BL6NJ_P0052438 Gbf1 protein_coding protein_coding MGP_C57BL6NJ_T0052439.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 46958781 47082518 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052440.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 46958799 47094707 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052441.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 46958824 47071260 + Gbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0052442.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47071160 47114279 + MGP_C57BL6NJ_P0052442 Gbf1 protein_coding protein_coding MGP_C57BL6NJ_T0052443.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47080587 47086286 + MGP_C57BL6NJ_P0052443 Gbf1 protein_coding protein_coding MGP_C57BL6NJ_T0052445.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47095317 47097232 + Gbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0052446.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47096238 47099915 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052447.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47107642 47108779 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052448.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47107949 47111452 + MGP_C57BL6NJ_P0052448 Gbf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052449.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47108104 47111255 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052450.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47110612 47111796 + Gbf1 protein_coding processed_transcript MGP_C57BL6NJ_T0052451.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47110770 47111710 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0052452.1 MGP_C57BL6NJ_G0025616.1 mouse_genomes_project 19 47112332 47113750 + Gbf1 protein_coding retained_intron MGP_C57BL6NJ_T0051825.1 MGP_C57BL6NJ_G0025411.1 mouse_genomes_project 19 23226261 23513050 - MGP_C57BL6NJ_P0051825 Pip5k1b protein_coding protein_coding MGP_C57BL6NJ_T0051826.1 MGP_C57BL6NJ_G0025411.1 mouse_genomes_project 19 23226261 23513080 - MGP_C57BL6NJ_P0051826 Pip5k1b protein_coding protein_coding MGP_C57BL6NJ_T0051827.1 MGP_C57BL6NJ_G0025411.1 mouse_genomes_project 19 23226864 23248958 - Pip5k1b protein_coding processed_transcript MGP_C57BL6NJ_T0051828.1 MGP_C57BL6NJ_G0025411.1 mouse_genomes_project 19 23338637 23513046 - Pip5k1b protein_coding retained_intron MGP_C57BL6NJ_T0051829.1 MGP_C57BL6NJ_G0025411.1 mouse_genomes_project 19 23378732 23512997 - Pip5k1b protein_coding processed_transcript MGP_C57BL6NJ_T0051927.1 MGP_C57BL6NJ_G0025440.1 mouse_genomes_project 19 28640155 28703193 + MGP_C57BL6NJ_P0051927 Pdcd1lg2 protein_coding protein_coding MGP_C57BL6NJ_T0004017.1 MGP_C57BL6NJ_G0003586.1 mouse_genomes_project 19 38906331 38910199 - Gm28991 antisense antisense MGP_C57BL6NJ_T0018171.1 MGP_C57BL6NJ_G0015775.1 mouse_genomes_project 19 9270949 9320651 - processed_transcript antisense MGP_C57BL6NJ_T0018172.1 MGP_C57BL6NJ_G0015775.1 mouse_genomes_project 19 9286755 9320652 - processed_transcript antisense MGP_C57BL6NJ_T0050930.1 MGP_C57BL6NJ_G0025090.1 mouse_genomes_project 19 1810832 1816616 + MGP_C57BL6NJ_P0050930 Ctsf protein_coding protein_coding MGP_C57BL6NJ_T0013720.1 MGP_C57BL6NJ_G0011765.1 mouse_genomes_project 19 55245356 55245776 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051944.1 MGP_C57BL6NJ_G0025444.1 mouse_genomes_project 19 28956587 29050221 - MGP_C57BL6NJ_P0051944 9930021J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0051945.1 MGP_C57BL6NJ_G0025444.1 mouse_genomes_project 19 28957498 28997123 - MGP_C57BL6NJ_P0051945 9930021J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0051946.1 MGP_C57BL6NJ_G0025444.1 mouse_genomes_project 19 28957760 29050363 - MGP_C57BL6NJ_P0051946 9930021J03Rik protein_coding protein_coding MGP_C57BL6NJ_T0051947.1 MGP_C57BL6NJ_G0025444.1 mouse_genomes_project 19 28962907 28997185 - MGP_C57BL6NJ_P0051947 9930021J03Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050977.1 MGP_C57BL6NJ_G0025112.1 mouse_genomes_project 19 2355498 2360368 - MGP_C57BL6NJ_P0050977 Cst6 protein_coding protein_coding MGP_C57BL6NJ_T0052476.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47453509 47519303 + MGP_C57BL6NJ_P0052476 Wbp1l protein_coding protein_coding MGP_C57BL6NJ_T0052477.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47453538 47519299 + MGP_C57BL6NJ_P0052477 Wbp1l protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052478.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47453539 47519296 + MGP_C57BL6NJ_P0052478 Wbp1l protein_coding protein_coding MGP_C57BL6NJ_T0052479.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47453549 47504753 + Wbp1l protein_coding processed_transcript MGP_C57BL6NJ_T0052480.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47482334 47514454 + Wbp1l protein_coding processed_transcript MGP_C57BL6NJ_T0052481.1 MGP_C57BL6NJ_G0025627.1 mouse_genomes_project 19 47482334 47519301 + MGP_C57BL6NJ_P0052481 Wbp1l protein_coding protein_coding MGP_C57BL6NJ_T0007289.1 MGP_C57BL6NJ_G0005982.1 mouse_genomes_project 19 62170999 62188918 + E330013P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0007290.1 MGP_C57BL6NJ_G0005982.1 mouse_genomes_project 19 62171028 62179413 + E330013P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0007291.1 MGP_C57BL6NJ_G0005982.1 mouse_genomes_project 19 62177617 62183629 + E330013P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0004029.1 MGP_C57BL6NJ_G0003596.1 mouse_genomes_project 19 60075257 60108298 + Gm16277 antisense antisense MGP_C57BL6NJ_T0013722.1 MGP_C57BL6NJ_G0011767.1 mouse_genomes_project 19 60710347 60710728 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052136.1 MGP_C57BL6NJ_G0025514.1 mouse_genomes_project 19 39294059 39358617 + MGP_C57BL6NJ_P0052136 Cyp2c66 protein_coding protein_coding MGP_C57BL6NJ_T0052137.1 MGP_C57BL6NJ_G0025514.1 mouse_genomes_project 19 39294071 39358933 + MGP_C57BL6NJ_P0052137 Cyp2c66 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0099063.1 MGP_C57BL6NJ_G0037127.1 mouse_genomes_project 19 35447930 35448061 - Gm22853 rRNA rRNA MGP_C57BL6NJ_T0010535.1 MGP_C57BL6NJ_G0008620.1 mouse_genomes_project 19 35082392 35082462 - Gm23075 miRNA miRNA MGP_C57BL6NJ_T0013699.1 MGP_C57BL6NJ_G0011744.1 mouse_genomes_project 19 12148423 12149212 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052690.1 MGP_C57BL6NJ_G0025691.1 mouse_genomes_project 19 60405921 60448919 + MGP_C57BL6NJ_P0052690 Ccdc172 protein_coding protein_coding MGP_C57BL6NJ_T0051510.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7878837 7918972 - MGP_C57BL6NJ_P0051510 Myrf protein_coding protein_coding MGP_C57BL6NJ_T0051511.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7879870 7918972 - Myrf protein_coding retained_intron MGP_C57BL6NJ_T0051512.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7880269 7918969 - MGP_C57BL6NJ_P0051512 Myrf protein_coding protein_coding MGP_C57BL6NJ_T0051513.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7880865 7895733 - MGP_C57BL6NJ_P0051513 Myrf protein_coding protein_coding MGP_C57BL6NJ_T0051514.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7880950 7918828 - MGP_C57BL6NJ_P0051514 Myrf protein_coding protein_coding MGP_C57BL6NJ_T0051515.1 MGP_C57BL6NJ_G0025257.1 mouse_genomes_project 19 7904222 7918972 - Myrf protein_coding retained_intron MGP_C57BL6NJ_T0011734.1 MGP_C57BL6NJ_G0009819.1 mouse_genomes_project 19 2910513 2910623 - Gm27505 misc_RNA misc_RNA MGP_C57BL6NJ_T0051640.1 MGP_C57BL6NJ_G0025303.1 mouse_genomes_project 19 9486567 9499872 - MGP_C57BL6NJ_P0051640 Oosp2 protein_coding protein_coding MGP_C57BL6NJ_T0051641.1 MGP_C57BL6NJ_G0025303.1 mouse_genomes_project 19 9486568 9499915 - MGP_C57BL6NJ_P0051641 Oosp2 protein_coding protein_coding MGP_C57BL6NJ_T0050713.1 MGP_C57BL6NJ_G0025036.1 mouse_genomes_project 19 69460 131183 + MGP_C57BL6NJ_P0050713 Cpt1a protein_coding protein_coding MGP_C57BL6NJ_T0098849.1 MGP_C57BL6NJ_G0036913.1 mouse_genomes_project 19 11084516 11085441 + pseudogene pseudogene MGP_C57BL6NJ_T0052015.1 MGP_C57BL6NJ_G0025470.1 mouse_genomes_project 19 33921974 33936222 - MGP_C57BL6NJ_P0052015 Acta2 protein_coding protein_coding MGP_C57BL6NJ_T0051435.1 MGP_C57BL6NJ_G0025226.1 mouse_genomes_project 19 6212193 6231336 - MGP_C57BL6NJ_P0051435 Ttc9c protein_coding protein_coding MGP_C57BL6NJ_T0051436.1 MGP_C57BL6NJ_G0025226.1 mouse_genomes_project 19 6214589 6230927 - MGP_C57BL6NJ_P0051436 Ttc9c protein_coding protein_coding MGP_C57BL6NJ_T0051437.1 MGP_C57BL6NJ_G0025226.1 mouse_genomes_project 19 6214749 6231297 - MGP_C57BL6NJ_P0051437 Ttc9c protein_coding protein_coding MGP_C57BL6NJ_T0051438.1 MGP_C57BL6NJ_G0025226.1 mouse_genomes_project 19 6230299 6231235 - Ttc9c protein_coding retained_intron MGP_C57BL6NJ_T0007245.1 MGP_C57BL6NJ_G0005951.1 mouse_genomes_project 19 24720207 24721313 - 2610016A17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007246.1 MGP_C57BL6NJ_G0005951.1 mouse_genomes_project 19 24720245 24721296 - 2610016A17Rik lincRNA lincRNA MGP_C57BL6NJ_T0007247.1 MGP_C57BL6NJ_G0005951.1 mouse_genomes_project 19 24720638 24721327 - 2610016A17Rik lincRNA lincRNA MGP_C57BL6NJ_T0050925.1 MGP_C57BL6NJ_G0025087.1 mouse_genomes_project 19 1751360 1762416 - MGP_C57BL6NJ_P0050925 Rbm14 protein_coding protein_coding MGP_C57BL6NJ_T0050926.1 MGP_C57BL6NJ_G0025087.1 mouse_genomes_project 19 1751713 1762367 - MGP_C57BL6NJ_P0050926 Rbm14 protein_coding protein_coding MGP_C57BL6NJ_T0050927.1 MGP_C57BL6NJ_G0025087.1 mouse_genomes_project 19 1752568 1762294 - MGP_C57BL6NJ_P0050927 Rbm14 protein_coding protein_coding MGP_C57BL6NJ_T0051831.1 MGP_C57BL6NJ_G0025413.1 mouse_genomes_project 19 23636329 23641812 + MGP_C57BL6NJ_P0051831 Tmem252 protein_coding protein_coding MGP_C57BL6NJ_T0052240.1 MGP_C57BL6NJ_G0025549.1 mouse_genomes_project 19 42413610 42422675 + MGP_C57BL6NJ_P0052240 Ankrd2 protein_coding protein_coding MGP_C57BL6NJ_T0050704.1 MGP_C57BL6NJ_G0025034.1 mouse_genomes_project 19 3212 24871 - MGP_C57BL6NJ_P0050704 Ighmbp2 protein_coding protein_coding MGP_C57BL6NJ_T0050705.1 MGP_C57BL6NJ_G0025034.1 mouse_genomes_project 19 7094 25065 - MGP_C57BL6NJ_P0050705 Ighmbp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050706.1 MGP_C57BL6NJ_G0025034.1 mouse_genomes_project 19 7640 9992 - Ighmbp2 protein_coding retained_intron MGP_C57BL6NJ_T0051622.1 MGP_C57BL6NJ_G0025298.1 mouse_genomes_project 19 9306633 9318452 + MGP_C57BL6NJ_P0051622 Ms4a6b protein_coding protein_coding MGP_C57BL6NJ_T0051623.1 MGP_C57BL6NJ_G0025298.1 mouse_genomes_project 19 9306640 9318756 + MGP_C57BL6NJ_P0051623 Ms4a6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051624.1 MGP_C57BL6NJ_G0025298.1 mouse_genomes_project 19 9306668 9309930 + Ms4a6b protein_coding retained_intron MGP_C57BL6NJ_T0051625.1 MGP_C57BL6NJ_G0025298.1 mouse_genomes_project 19 9309745 9315492 + MGP_C57BL6NJ_P0051625 Ms4a6b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052264.1 MGP_C57BL6NJ_G0025560.1 mouse_genomes_project 19 42925740 43000934 + MGP_C57BL6NJ_P0052264 R3hcc1l protein_coding protein_coding MGP_C57BL6NJ_T0052265.1 MGP_C57BL6NJ_G0025560.1 mouse_genomes_project 19 42925779 42999606 + MGP_C57BL6NJ_P0052265 R3hcc1l protein_coding protein_coding MGP_C57BL6NJ_T0052266.1 MGP_C57BL6NJ_G0025560.1 mouse_genomes_project 19 42925803 42984674 + MGP_C57BL6NJ_P0052266 R3hcc1l protein_coding protein_coding MGP_C57BL6NJ_T0052267.1 MGP_C57BL6NJ_G0025560.1 mouse_genomes_project 19 42973007 42985239 + R3hcc1l protein_coding retained_intron MGP_C57BL6NJ_T0052268.1 MGP_C57BL6NJ_G0025560.1 mouse_genomes_project 19 42989639 42993367 + R3hcc1l protein_coding retained_intron MGP_C57BL6NJ_T0051675.1 MGP_C57BL6NJ_G0025330.1 mouse_genomes_project 19 10469670 10511451 - MGP_C57BL6NJ_P0051675 Dtx4 protein_coding protein_coding MGP_C57BL6NJ_T0052717.1 MGP_C57BL6NJ_G0025708.1 mouse_genomes_project 19 62811911 62815838 + MGP_C57BL6NJ_P0052717 Nanos1 protein_coding protein_coding MGP_C57BL6NJ_T0051777.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19001422 19019642 - MGP_C57BL6NJ_P0051777 Anxa1 protein_coding protein_coding MGP_C57BL6NJ_T0051778.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19001550 19019370 - Anxa1 protein_coding processed_transcript MGP_C57BL6NJ_T0051779.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19001550 19003208 - Anxa1 protein_coding retained_intron MGP_C57BL6NJ_T0051780.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19005300 19007303 - Anxa1 protein_coding retained_intron MGP_C57BL6NJ_T0051781.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19005300 19008735 - Anxa1 protein_coding retained_intron MGP_C57BL6NJ_T0051782.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19006831 19010839 - Anxa1 protein_coding retained_intron MGP_C57BL6NJ_T0051783.1 MGP_C57BL6NJ_G0025390.1 mouse_genomes_project 19 19008372 19019349 - Anxa1 protein_coding processed_transcript MGP_C57BL6NJ_T0010525.1 MGP_C57BL6NJ_G0008610.1 mouse_genomes_project 19 21535811 21535879 + Mir204 miRNA miRNA MGP_C57BL6NJ_T0051681.1 MGP_C57BL6NJ_G0025333.1 mouse_genomes_project 19 10661516 10681390 + MGP_C57BL6NJ_P0051681 Glyat protein_coding protein_coding MGP_C57BL6NJ_T0051682.1 MGP_C57BL6NJ_G0025333.1 mouse_genomes_project 19 10661723 10676651 + Glyat protein_coding retained_intron MGP_C57BL6NJ_T0051683.1 MGP_C57BL6NJ_G0025333.1 mouse_genomes_project 19 10661723 10663308 + Glyat protein_coding processed_transcript MGP_C57BL6NJ_T0051684.1 MGP_C57BL6NJ_G0025333.1 mouse_genomes_project 19 10661741 10682052 + MGP_C57BL6NJ_P0051684 Glyat protein_coding protein_coding MGP_C57BL6NJ_T0051685.1 MGP_C57BL6NJ_G0025333.1 mouse_genomes_project 19 10667632 10678565 + Glyat protein_coding processed_transcript MGP_C57BL6NJ_T0101429.1 MGP_C57BL6NJ_G0039475.1 mouse_genomes_project 19 942554 942770 - Gm23927 snoRNA snoRNA MGP_C57BL6NJ_T0013692.1 MGP_C57BL6NJ_G0011737.1 mouse_genomes_project 19 5964770 5965663 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051490.1 MGP_C57BL6NJ_G0025247.1 mouse_genomes_project 19 7439506 7444753 + MGP_C57BL6NJ_P0051490 Scgb2a2 protein_coding protein_coding MGP_C57BL6NJ_T0101456.1 MGP_C57BL6NJ_G0039502.1 mouse_genomes_project 19 47191250 47191359 + Gm24610 snoRNA snoRNA MGP_C57BL6NJ_T0051409.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6149991 6170134 + MGP_C57BL6NJ_P0051409 Nxf1 protein_coding protein_coding MGP_C57BL6NJ_T0051410.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6150003 6164045 + Nxf1 protein_coding processed_transcript MGP_C57BL6NJ_T0051411.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6150034 6161723 + MGP_C57BL6NJ_P0051411 Nxf1 protein_coding protein_coding MGP_C57BL6NJ_T0051412.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6150034 6160171 + MGP_C57BL6NJ_P0051412 Nxf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051413.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6150116 6168800 + MGP_C57BL6NJ_P0051413 Nxf1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051414.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6161365 6163828 + MGP_C57BL6NJ_P0051414 Nxf1 protein_coding protein_coding MGP_C57BL6NJ_T0051415.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6163108 6165599 + Nxf1 protein_coding retained_intron MGP_C57BL6NJ_T0051416.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6163442 6164319 + Nxf1 protein_coding retained_intron MGP_C57BL6NJ_T0051417.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6165066 6167333 + MGP_C57BL6NJ_P0051417 Nxf1 protein_coding protein_coding MGP_C57BL6NJ_T0051418.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6166575 6167405 + Nxf1 protein_coding processed_transcript MGP_C57BL6NJ_T0051419.1 MGP_C57BL6NJ_G0025222.1 mouse_genomes_project 19 6166619 6167346 + Nxf1 protein_coding retained_intron MGP_C57BL6NJ_T0051057.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2784366 2787992 - MGP_C57BL6NJ_P0051057 Sssca1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051058.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2786581 2788000 - MGP_C57BL6NJ_P0051058 Sssca1 protein_coding protein_coding MGP_C57BL6NJ_T0051059.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2786585 2787939 - Sssca1 protein_coding retained_intron MGP_C57BL6NJ_T0051060.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2786585 2788011 - MGP_C57BL6NJ_P0051060 Sssca1 protein_coding protein_coding MGP_C57BL6NJ_T0051061.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2786689 2787754 - MGP_C57BL6NJ_P0051061 Sssca1 protein_coding protein_coding MGP_C57BL6NJ_T0051062.1 MGP_C57BL6NJ_G0025139.1 mouse_genomes_project 19 2787170 2787978 - Sssca1 protein_coding retained_intron MGP_C57BL6NJ_T0050955.1 MGP_C57BL6NJ_G0025102.1 mouse_genomes_project 19 2052599 2055159 + MGP_C57BL6NJ_P0050955 Cd248 protein_coding protein_coding MGP_C57BL6NJ_T0052106.1 MGP_C57BL6NJ_G0025505.1 mouse_genomes_project 19 38277565 38316403 - MGP_C57BL6NJ_P0052106 Fra10ac1 protein_coding protein_coding MGP_C57BL6NJ_T0051758.1 MGP_C57BL6NJ_G0025383.1 mouse_genomes_project 19 15826214 16247302 - MGP_C57BL6NJ_P0051758 Pcsk5 protein_coding protein_coding MGP_C57BL6NJ_T0051759.1 MGP_C57BL6NJ_G0025383.1 mouse_genomes_project 19 15959503 16247302 - MGP_C57BL6NJ_P0051759 Pcsk5 protein_coding protein_coding MGP_C57BL6NJ_T0051125.1 MGP_C57BL6NJ_G0025156.1 mouse_genomes_project 19 3167001 3172442 - MGP_C57BL6NJ_P0051125 Gm28374 protein_coding protein_coding MGP_C57BL6NJ_T0051502.1 MGP_C57BL6NJ_G0025255.1 mouse_genomes_project 19 7867769 7874735 - MGP_C57BL6NJ_P0051502 Fen1 protein_coding protein_coding MGP_C57BL6NJ_T0051503.1 MGP_C57BL6NJ_G0025255.1 mouse_genomes_project 19 7867775 7874509 - MGP_C57BL6NJ_P0051503 Fen1 protein_coding protein_coding MGP_C57BL6NJ_T0051504.1 MGP_C57BL6NJ_G0025255.1 mouse_genomes_project 19 7867775 7874634 - MGP_C57BL6NJ_P0051504 Fen1 protein_coding protein_coding MGP_C57BL6NJ_T0051505.1 MGP_C57BL6NJ_G0025255.1 mouse_genomes_project 19 7867779 7874460 - MGP_C57BL6NJ_P0051505 Fen1 protein_coding protein_coding MGP_C57BL6NJ_T0051965.1 MGP_C57BL6NJ_G0025450.1 mouse_genomes_project 19 29513658 29520941 + MGP_C57BL6NJ_P0051965 Mbl2 protein_coding protein_coding MGP_C57BL6NJ_T0101449.1 MGP_C57BL6NJ_G0039495.1 mouse_genomes_project 19 24161742 24161874 - Gm24252 snoRNA snoRNA MGP_C57BL6NJ_T0051955.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29300193 29329708 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051956.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29300193 29353127 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051957.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29300193 29365358 + MGP_C57BL6NJ_P0051957 Uhrf2 protein_coding protein_coding MGP_C57BL6NJ_T0051958.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29300269 29328059 + MGP_C57BL6NJ_P0051958 Uhrf2 protein_coding protein_coding MGP_C57BL6NJ_T0051959.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29344677 29347131 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051960.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29350111 29351853 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051961.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29357327 29358950 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051962.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29360689 29365358 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0051963.1 MGP_C57BL6NJ_G0025448.1 mouse_genomes_project 19 29363596 29364575 + Uhrf2 protein_coding retained_intron MGP_C57BL6NJ_T0050718.1 MGP_C57BL6NJ_G0025038.1 mouse_genomes_project 19 155348 159902 - MGP_C57BL6NJ_P0050718 Gal protein_coding protein_coding MGP_C57BL6NJ_T0007270.1 MGP_C57BL6NJ_G0005968.1 mouse_genomes_project 19 46025151 46025688 + Gm29594 lincRNA lincRNA MGP_C57BL6NJ_T0050976.1 MGP_C57BL6NJ_G0025111.1 mouse_genomes_project 19 2346524 2354947 + MGP_C57BL6NJ_P0050976 protein_coding protein_coding MGP_C57BL6NJ_T0052729.1 MGP_C57BL6NJ_G0025712.1 mouse_genomes_project 19 62930764 62941195 - MGP_C57BL6NJ_P0052729 Prdx3 protein_coding protein_coding MGP_C57BL6NJ_T0051568.1 MGP_C57BL6NJ_G0025278.1 mouse_genomes_project 19 8646567 8648579 - MGP_C57BL6NJ_P0051568 Zp1 protein_coding protein_coding MGP_C57BL6NJ_T0051569.1 MGP_C57BL6NJ_G0025278.1 mouse_genomes_project 19 8646569 8653565 - MGP_C57BL6NJ_P0051569 Zp1 protein_coding protein_coding MGP_C57BL6NJ_T0051313.1 MGP_C57BL6NJ_G0025195.1 mouse_genomes_project 19 4213354 4235750 - MGP_C57BL6NJ_P0051313 Stip1 protein_coding protein_coding MGP_C57BL6NJ_T0010553.1 MGP_C57BL6NJ_G0008638.1 mouse_genomes_project 19 62629522 62629611 + Gm25238 miRNA miRNA MGP_C57BL6NJ_T0003997.1 MGP_C57BL6NJ_G0003573.1 mouse_genomes_project 19 2911498 2917211 + Frmd8os antisense antisense MGP_C57BL6NJ_T0003998.1 MGP_C57BL6NJ_G0003573.1 mouse_genomes_project 19 2914330 2917195 + Frmd8os antisense antisense MGP_C57BL6NJ_T0051977.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31595290 31877256 - MGP_C57BL6NJ_P0051977 Sgms1 protein_coding protein_coding MGP_C57BL6NJ_T0051978.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31595293 31835004 - MGP_C57BL6NJ_P0051978 Sgms1 protein_coding protein_coding MGP_C57BL6NJ_T0051979.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31596042 31686635 - MGP_C57BL6NJ_P0051979 Sgms1 protein_coding protein_coding MGP_C57BL6NJ_T0051980.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31596708 31759101 - MGP_C57BL6NJ_P0051980 Sgms1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051981.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31596710 31635635 - MGP_C57BL6NJ_P0051981 Sgms1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051982.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31633667 31878461 - Sgms1 protein_coding retained_intron MGP_C57BL6NJ_T0051983.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31635472 31678310 - MGP_C57BL6NJ_P0051983 Sgms1 protein_coding protein_coding MGP_C57BL6NJ_T0051984.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31635569 31719130 - Sgms1 protein_coding processed_transcript MGP_C57BL6NJ_T0051985.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31635581 31806745 - Sgms1 protein_coding processed_transcript MGP_C57BL6NJ_T0051986.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31635710 31759075 - Sgms1 protein_coding processed_transcript MGP_C57BL6NJ_T0051987.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31697564 31728298 - Sgms1 protein_coding processed_transcript MGP_C57BL6NJ_T0051988.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31700516 31771725 - Sgms1 protein_coding retained_intron MGP_C57BL6NJ_T0051989.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31703247 31719144 - Sgms1 protein_coding retained_intron MGP_C57BL6NJ_T0051990.1 MGP_C57BL6NJ_G0025456.1 mouse_genomes_project 19 31771424 31877207 - Sgms1 protein_coding retained_intron MGP_C57BL6NJ_T0051848.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25651827 25843269 + MGP_C57BL6NJ_P0051848 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051849.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25651831 25843223 + MGP_C57BL6NJ_P0051849 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051850.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25655178 25843221 + MGP_C57BL6NJ_P0051850 Smarca2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051851.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25655253 25843274 + MGP_C57BL6NJ_P0051851 Smarca2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051852.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25667537 25842318 + MGP_C57BL6NJ_P0051852 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051853.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25671260 25678868 + MGP_C57BL6NJ_P0051853 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051854.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25722778 25730891 + Smarca2 protein_coding retained_intron MGP_C57BL6NJ_T0051855.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25733311 25816892 + Smarca2 protein_coding processed_transcript MGP_C57BL6NJ_T0051856.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25776336 25836701 + Smarca2 protein_coding retained_intron MGP_C57BL6NJ_T0051857.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25782169 25816932 + Smarca2 protein_coding processed_transcript MGP_C57BL6NJ_T0051858.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25813230 25842424 + MGP_C57BL6NJ_P0051858 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051859.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25813385 25842318 + MGP_C57BL6NJ_P0051859 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051860.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25813420 25841190 + MGP_C57BL6NJ_P0051860 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051861.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25813421 25842318 + MGP_C57BL6NJ_P0051861 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051862.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25813421 25843221 + MGP_C57BL6NJ_P0051862 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051863.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25814683 25839253 + MGP_C57BL6NJ_P0051863 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051864.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25815896 25835943 + MGP_C57BL6NJ_P0051864 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051865.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25816904 25843269 + MGP_C57BL6NJ_P0051865 Smarca2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051866.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25818561 25842599 + MGP_C57BL6NJ_P0051866 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051867.1 MGP_C57BL6NJ_G0025422.1 mouse_genomes_project 19 25835438 25842380 + MGP_C57BL6NJ_P0051867 Smarca2 protein_coding protein_coding MGP_C57BL6NJ_T0051592.1 MGP_C57BL6NJ_G0025289.1 mouse_genomes_project 19 9020806 9039416 - MGP_C57BL6NJ_P0051592 Ms4a1 protein_coding protein_coding MGP_C57BL6NJ_T0051593.1 MGP_C57BL6NJ_G0025289.1 mouse_genomes_project 19 9022008 9025787 - Ms4a1 protein_coding retained_intron MGP_C57BL6NJ_T0051594.1 MGP_C57BL6NJ_G0025289.1 mouse_genomes_project 19 9025092 9039320 - Ms4a1 protein_coding retained_intron MGP_C57BL6NJ_T0010523.1 MGP_C57BL6NJ_G0008608.1 mouse_genomes_project 19 14606206 14606319 - Mir496b miRNA miRNA MGP_C57BL6NJ_T0051660.1 MGP_C57BL6NJ_G0025315.1 mouse_genomes_project 19 9948165 9949098 - MGP_C57BL6NJ_P0051660 Olfr1423 protein_coding protein_coding MGP_C57BL6NJ_T0007243.1 MGP_C57BL6NJ_G0005949.1 mouse_genomes_project 19 21953593 21954411 + 2410080I02Rik lincRNA lincRNA MGP_C57BL6NJ_T0101439.1 MGP_C57BL6NJ_G0039485.1 mouse_genomes_project 19 6114591 6114717 + Snord22 snoRNA snoRNA MGP_C57BL6NJ_T0010532.1 MGP_C57BL6NJ_G0008617.1 mouse_genomes_project 19 34517638 34517742 + Gm27476 miRNA miRNA MGP_C57BL6NJ_T0051822.1 MGP_C57BL6NJ_G0025410.1 mouse_genomes_project 19 23179648 23204738 - MGP_C57BL6NJ_P0051822 Fxn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051823.1 MGP_C57BL6NJ_G0025410.1 mouse_genomes_project 19 23179648 23204775 - MGP_C57BL6NJ_P0051823 Fxn protein_coding protein_coding MGP_C57BL6NJ_T0051824.1 MGP_C57BL6NJ_G0025410.1 mouse_genomes_project 19 23179954 23201381 - Fxn protein_coding retained_intron MGP_C57BL6NJ_T0051577.1 MGP_C57BL6NJ_G0025282.1 mouse_genomes_project 19 8713931 8728875 - MGP_C57BL6NJ_P0051577 Ms4a15 protein_coding protein_coding MGP_C57BL6NJ_T0051578.1 MGP_C57BL6NJ_G0025282.1 mouse_genomes_project 19 8718797 8728806 - MGP_C57BL6NJ_P0051578 Ms4a15 protein_coding protein_coding MGP_C57BL6NJ_T0051579.1 MGP_C57BL6NJ_G0025282.1 mouse_genomes_project 19 8718883 8728855 - MGP_C57BL6NJ_P0051579 Ms4a15 protein_coding protein_coding MGP_C57BL6NJ_T0052128.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39099537 39143816 + MGP_C57BL6NJ_P0052128 Hells protein_coding protein_coding MGP_C57BL6NJ_T0052129.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39099652 39111092 + Hells protein_coding retained_intron MGP_C57BL6NJ_T0052130.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39099796 39114546 + MGP_C57BL6NJ_P0052130 Hells protein_coding protein_coding MGP_C57BL6NJ_T0052131.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39100012 39124241 + Hells protein_coding processed_transcript MGP_C57BL6NJ_T0052132.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39103130 39111193 + Hells protein_coding retained_intron MGP_C57BL6NJ_T0052133.1 MGP_C57BL6NJ_G0025511.1 mouse_genomes_project 19 39114320 39121107 + Hells protein_coding processed_transcript MGP_C57BL6NJ_T0100155.1 MGP_C57BL6NJ_G0038201.1 mouse_genomes_project 19 24476595 24476699 - Gm26207 snRNA snRNA MGP_C57BL6NJ_T0051708.1 MGP_C57BL6NJ_G0025348.1 mouse_genomes_project 19 11092801 11093725 - MGP_C57BL6NJ_P0051708 Olfr1453 protein_coding protein_coding MGP_C57BL6NJ_T0011744.1 MGP_C57BL6NJ_G0009829.1 mouse_genomes_project 19 38606958 38607041 - Gm24930 misc_RNA misc_RNA MGP_C57BL6NJ_T0051719.1 MGP_C57BL6NJ_G0025359.1 mouse_genomes_project 19 11709856 11710804 + MGP_C57BL6NJ_P0051719 Olfr1484 protein_coding protein_coding MGP_C57BL6NJ_T0051096.1 MGP_C57BL6NJ_G0025152.1 mouse_genomes_project 19 3144421 3146058 + MGP_C57BL6NJ_P0051096 Gm9843 protein_coding protein_coding MGP_C57BL6NJ_T0051097.1 MGP_C57BL6NJ_G0025152.1 mouse_genomes_project 19 3144421 3146058 + MGP_C57BL6NJ_P0051097 Gm9843 protein_coding protein_coding MGP_C57BL6NJ_T0051098.1 MGP_C57BL6NJ_G0025152.1 mouse_genomes_project 19 3144500 3146058 + MGP_C57BL6NJ_P0051098 Gm9843 protein_coding protein_coding MGP_C57BL6NJ_T0051770.1 MGP_C57BL6NJ_G0025387.1 mouse_genomes_project 19 17190163 17195399 + MGP_C57BL6NJ_P0051770 D030056L22Rik protein_coding protein_coding MGP_C57BL6NJ_T0051771.1 MGP_C57BL6NJ_G0025387.1 mouse_genomes_project 19 17190206 17195399 + MGP_C57BL6NJ_P0051771 D030056L22Rik protein_coding protein_coding MGP_C57BL6NJ_T0051655.1 MGP_C57BL6NJ_G0025311.1 mouse_genomes_project 19 9721020 9722180 - MGP_C57BL6NJ_P0051655 Olfr1419 protein_coding protein_coding MGP_C57BL6NJ_T0010502.1 MGP_C57BL6NJ_G0008587.1 mouse_genomes_project 19 1158827 1158888 - Mir6985 miRNA miRNA MGP_C57BL6NJ_T0051994.1 MGP_C57BL6NJ_G0025459.1 mouse_genomes_project 19 32196940 32237939 - MGP_C57BL6NJ_P0051994 Atad1 protein_coding protein_coding MGP_C57BL6NJ_T0010548.1 MGP_C57BL6NJ_G0008633.1 mouse_genomes_project 19 51335476 51335601 + Gm27749 miRNA miRNA MGP_C57BL6NJ_T0050933.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1842611 1849341 + Zdhhc24 protein_coding processed_transcript MGP_C57BL6NJ_T0050934.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1842615 1849341 + MGP_C57BL6NJ_P0050934 Zdhhc24 protein_coding protein_coding MGP_C57BL6NJ_T0050935.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1842633 1849339 + Zdhhc24 protein_coding processed_transcript MGP_C57BL6NJ_T0050936.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1842647 1849340 + MGP_C57BL6NJ_P0050936 Zdhhc24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050937.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1842666 1847743 + MGP_C57BL6NJ_P0050937 Zdhhc24 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050938.1 MGP_C57BL6NJ_G0025092.1 mouse_genomes_project 19 1843710 1847726 + Zdhhc24 protein_coding processed_transcript MGP_C57BL6NJ_T0051469.1 MGP_C57BL6NJ_G0025238.1 mouse_genomes_project 19 6350616 6352591 - MGP_C57BL6NJ_P0051469 Rom1 protein_coding protein_coding MGP_C57BL6NJ_T0101430.1 MGP_C57BL6NJ_G0039476.1 mouse_genomes_project 19 942555 942770 - Gm23927 snoRNA snoRNA MGP_C57BL6NJ_T0007251.1 MGP_C57BL6NJ_G0005954.1 mouse_genomes_project 19 28721742 28761452 - A930007I19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007252.1 MGP_C57BL6NJ_G0005954.1 mouse_genomes_project 19 28722321 28762671 - A930007I19Rik lincRNA lincRNA MGP_C57BL6NJ_T0007253.1 MGP_C57BL6NJ_G0005954.1 mouse_genomes_project 19 28743168 28761447 - A930007I19Rik lincRNA lincRNA MGP_C57BL6NJ_T0052692.1 MGP_C57BL6NJ_G0025693.1 mouse_genomes_project 19 60642857 60658138 + MGP_C57BL6NJ_P0052692 Pnliprp1 protein_coding protein_coding MGP_C57BL6NJ_T0013714.1 MGP_C57BL6NJ_G0011759.1 mouse_genomes_project 19 40914433 40915191 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052000.1 MGP_C57BL6NJ_G0025462.1 mouse_genomes_project 19 32991969 33432864 - MGP_C57BL6NJ_P0052000 Lipo1 protein_coding protein_coding MGP_C57BL6NJ_T0052008.1 MGP_C57BL6NJ_G0025468.1 mouse_genomes_project 19 33802532 33844507 - MGP_C57BL6NJ_P0052008 Ankrd22 protein_coding protein_coding MGP_C57BL6NJ_T0052009.1 MGP_C57BL6NJ_G0025468.1 mouse_genomes_project 19 33802908 33838308 - Ankrd22 protein_coding processed_transcript MGP_C57BL6NJ_T0052010.1 MGP_C57BL6NJ_G0025468.1 mouse_genomes_project 19 33802908 33808791 - Ankrd22 protein_coding processed_transcript MGP_C57BL6NJ_T0051141.1 MGP_C57BL6NJ_G0025161.1 mouse_genomes_project 19 3207321 3209904 - MGP_C57BL6NJ_P0051141 Sac3d1 protein_coding protein_coding MGP_C57BL6NJ_T0052636.1 MGP_C57BL6NJ_G0025680.1 mouse_genomes_project 19 58277735 58331138 + MGP_C57BL6NJ_P0052636 Nhlrc2 protein_coding protein_coding MGP_C57BL6NJ_T0051910.1 MGP_C57BL6NJ_G0025433.1 mouse_genomes_project 19 28206165 28234376 - MGP_C57BL6NJ_P0051910 Ak3 protein_coding protein_coding MGP_C57BL6NJ_T0051911.1 MGP_C57BL6NJ_G0025433.1 mouse_genomes_project 19 28211233 28212577 - MGP_C57BL6NJ_P0051911 Ak3 protein_coding protein_coding MGP_C57BL6NJ_T0051821.1 MGP_C57BL6NJ_G0025409.1 mouse_genomes_project 19 22994327 23141958 - MGP_C57BL6NJ_P0051821 Tjp2 protein_coding protein_coding MGP_C57BL6NJ_T0051466.1 MGP_C57BL6NJ_G0025236.1 mouse_genomes_project 19 6320255 6340276 + MGP_C57BL6NJ_P0051466 Ganab protein_coding protein_coding MGP_C57BL6NJ_T0051467.1 MGP_C57BL6NJ_G0025236.1 mouse_genomes_project 19 6320287 6339347 + MGP_C57BL6NJ_P0051467 Ganab protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013694.1 MGP_C57BL6NJ_G0011739.1 mouse_genomes_project 19 9185662 9186719 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051610.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9234359 9258177 + Ms4a4b protein_coding retained_intron MGP_C57BL6NJ_T0051611.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9234359 9294563 + Ms4a4b protein_coding retained_intron MGP_C57BL6NJ_T0051612.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9234364 9258177 + Ms4a4b protein_coding retained_intron MGP_C57BL6NJ_T0051613.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9234379 9262865 + MGP_C57BL6NJ_P0051613 Ms4a4b protein_coding protein_coding MGP_C57BL6NJ_T0051614.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9260454 9262604 + Ms4a4b protein_coding retained_intron MGP_C57BL6NJ_T0051615.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9260570 9262604 + Ms4a4b protein_coding processed_transcript MGP_C57BL6NJ_T0051616.1 MGP_C57BL6NJ_G0025295.1 mouse_genomes_project 19 9261804 9262604 + Ms4a4b protein_coding retained_intron MGP_C57BL6NJ_T0052100.1 MGP_C57BL6NJ_G0025502.1 mouse_genomes_project 19 38181980 38198995 + MGP_C57BL6NJ_P0052100 Ffar4 protein_coding protein_coding MGP_C57BL6NJ_T0004013.1 MGP_C57BL6NJ_G0003583.1 mouse_genomes_project 19 23359355 23373676 + Pip5k1bos antisense antisense MGP_C57BL6NJ_T0050745.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646041 691568 + MGP_C57BL6NJ_P0050745 Chka protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050746.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646065 691572 + MGP_C57BL6NJ_P0050746 Chka protein_coding protein_coding MGP_C57BL6NJ_T0050747.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646078 669120 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0050748.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646078 691570 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0050749.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646100 664843 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0050750.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646100 675821 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0050751.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646344 691567 + MGP_C57BL6NJ_P0050751 Chka protein_coding protein_coding MGP_C57BL6NJ_T0050752.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646369 683071 + MGP_C57BL6NJ_P0050752 Chka protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050753.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 646631 684657 + MGP_C57BL6NJ_P0050753 Chka protein_coding protein_coding MGP_C57BL6NJ_T0050754.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 671870 687137 + MGP_C57BL6NJ_P0050754 Chka protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050755.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 672571 681792 + Chka protein_coding processed_transcript MGP_C57BL6NJ_T0050756.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 672585 681745 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0050757.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 672611 683623 + Chka protein_coding processed_transcript MGP_C57BL6NJ_T0050758.1 MGP_C57BL6NJ_G0025043.1 mouse_genomes_project 19 688933 690860 + Chka protein_coding retained_intron MGP_C57BL6NJ_T0051458.1 MGP_C57BL6NJ_G0025234.1 mouse_genomes_project 19 6309530 6311556 + MGP_C57BL6NJ_P0051458 1810009A15Rik protein_coding protein_coding MGP_C57BL6NJ_T0051459.1 MGP_C57BL6NJ_G0025234.1 mouse_genomes_project 19 6309576 6311421 + 1810009A15Rik protein_coding retained_intron MGP_C57BL6NJ_T0051460.1 MGP_C57BL6NJ_G0025234.1 mouse_genomes_project 19 6309592 6311221 + MGP_C57BL6NJ_P0051460 1810009A15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051462.1 MGP_C57BL6NJ_G0025234.1 mouse_genomes_project 19 6309606 6311140 + 1810009A15Rik protein_coding retained_intron MGP_C57BL6NJ_T0051463.1 MGP_C57BL6NJ_G0025234.1 mouse_genomes_project 19 6309616 6311416 + 1810009A15Rik protein_coding retained_intron MGP_C57BL6NJ_T0052461.1 MGP_C57BL6NJ_G0025620.1 mouse_genomes_project 19 47162563 47171412 - MGP_C57BL6NJ_P0052461 Cuedc2 protein_coding protein_coding MGP_C57BL6NJ_T0052462.1 MGP_C57BL6NJ_G0025620.1 mouse_genomes_project 19 47162563 47171412 - MGP_C57BL6NJ_P0052462 Cuedc2 protein_coding protein_coding MGP_C57BL6NJ_T0013713.1 MGP_C57BL6NJ_G0011758.1 mouse_genomes_project 19 29437790 29438168 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052467.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47231790 47327294 + MGP_C57BL6NJ_P0052467 Sufu protein_coding protein_coding MGP_C57BL6NJ_T0052468.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47231812 47324538 + MGP_C57BL6NJ_P0052468 Sufu protein_coding protein_coding MGP_C57BL6NJ_T0052469.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47231898 47293073 + MGP_C57BL6NJ_P0052469 Sufu protein_coding protein_coding MGP_C57BL6NJ_T0052470.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47231920 47315426 + MGP_C57BL6NJ_P0052470 Sufu protein_coding protein_coding MGP_C57BL6NJ_T0052471.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47295271 47314109 + Sufu protein_coding processed_transcript MGP_C57BL6NJ_T0052472.1 MGP_C57BL6NJ_G0025623.1 mouse_genomes_project 19 47321586 47324472 + Sufu protein_coding retained_intron MGP_C57BL6NJ_T0050790.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 834870 835386 - Ndufv1 protein_coding retained_intron MGP_C57BL6NJ_T0050791.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 834871 839990 - MGP_C57BL6NJ_P0050791 Ndufv1 protein_coding protein_coding MGP_C57BL6NJ_T0050792.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 834929 840041 - MGP_C57BL6NJ_P0050792 Ndufv1 protein_coding protein_coding MGP_C57BL6NJ_T0050793.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 835662 837215 - Ndufv1 protein_coding retained_intron MGP_C57BL6NJ_T0050794.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 835732 836508 - Ndufv1 protein_coding retained_intron MGP_C57BL6NJ_T0050795.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 836120 840072 - Ndufv1 protein_coding retained_intron MGP_C57BL6NJ_T0050796.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 836734 840076 - MGP_C57BL6NJ_P0050796 Ndufv1 protein_coding protein_coding MGP_C57BL6NJ_T0050797.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 836785 840033 - MGP_C57BL6NJ_P0050797 Ndufv1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050798.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 836829 840127 - MGP_C57BL6NJ_P0050798 Ndufv1 protein_coding protein_coding MGP_C57BL6NJ_T0050799.1 MGP_C57BL6NJ_G0025054.1 mouse_genomes_project 19 837368 840029 - Ndufv1 protein_coding retained_intron MGP_C57BL6NJ_T0051345.1 MGP_C57BL6NJ_G0025203.1 mouse_genomes_project 19 4573302 4603184 - MGP_C57BL6NJ_P0051345 AI846148 protein_coding protein_coding MGP_C57BL6NJ_T0050962.1 MGP_C57BL6NJ_G0025105.1 mouse_genomes_project 19 2077100 2082680 - MGP_C57BL6NJ_P0050962 Cnih2 protein_coding protein_coding MGP_C57BL6NJ_T0050996.1 MGP_C57BL6NJ_G0025122.1 mouse_genomes_project 19 2490068 2493327 - MGP_C57BL6NJ_P0050996 Ctsw protein_coding protein_coding MGP_C57BL6NJ_T0018189.1 MGP_C57BL6NJ_G0015783.1 mouse_genomes_project 19 61947018 61951695 + Gm4219 processed_transcript processed_transcript MGP_C57BL6NJ_T0052497.1 MGP_C57BL6NJ_G0025637.1 mouse_genomes_project 19 47989042 48029902 + MGP_C57BL6NJ_P0052497 Pdcd11 protein_coding protein_coding MGP_C57BL6NJ_T0052373.1 MGP_C57BL6NJ_G0025597.1 mouse_genomes_project 19 45681866 45693290 + MGP_C57BL6NJ_P0052373 Sfxn3 protein_coding protein_coding MGP_C57BL6NJ_T0052374.1 MGP_C57BL6NJ_G0025597.1 mouse_genomes_project 19 45681866 45693290 + MGP_C57BL6NJ_P0052374 Sfxn3 protein_coding protein_coding MGP_C57BL6NJ_T0052375.1 MGP_C57BL6NJ_G0025597.1 mouse_genomes_project 19 45681866 45693290 + MGP_C57BL6NJ_P0052375 Sfxn3 protein_coding protein_coding MGP_C57BL6NJ_T0052730.1 MGP_C57BL6NJ_G0025713.1 mouse_genomes_project 19 62957618 63161758 + MGP_C57BL6NJ_P0052730 Grk5 protein_coding protein_coding MGP_C57BL6NJ_T0051439.1 MGP_C57BL6NJ_G0025227.1 mouse_genomes_project 19 6231403 6246143 + MGP_C57BL6NJ_P0051439 Hnrnpul2 protein_coding protein_coding MGP_C57BL6NJ_T0052247.1 MGP_C57BL6NJ_G0025553.1 mouse_genomes_project 19 42470775 42509077 + MGP_C57BL6NJ_P0052247 Pi4k2a protein_coding protein_coding MGP_C57BL6NJ_T0052378.1 MGP_C57BL6NJ_G0025599.1 mouse_genomes_project 19 45807384 45813636 + MGP_C57BL6NJ_P0052378 Tlx1 protein_coding protein_coding MGP_C57BL6NJ_T0052379.1 MGP_C57BL6NJ_G0025599.1 mouse_genomes_project 19 45808173 45813092 + MGP_C57BL6NJ_P0052379 Tlx1 protein_coding protein_coding MGP_C57BL6NJ_T0010519.1 MGP_C57BL6NJ_G0008604.1 mouse_genomes_project 19 7860004 7860069 + Mir6993 miRNA miRNA MGP_C57BL6NJ_T0051580.1 MGP_C57BL6NJ_G0025283.1 mouse_genomes_project 19 8732649 8776331 - MGP_C57BL6NJ_P0051580 Ms4a18 protein_coding protein_coding MGP_C57BL6NJ_T0004006.1 MGP_C57BL6NJ_G0003578.1 mouse_genomes_project 19 4602718 4604479 + 1700105P06Rik antisense antisense MGP_C57BL6NJ_T0013719.1 MGP_C57BL6NJ_G0011764.1 mouse_genomes_project 19 53079193 53079570 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052487.1 MGP_C57BL6NJ_G0025631.1 mouse_genomes_project 19 47647030 47766021 + MGP_C57BL6NJ_P0052487 Cnnm2 protein_coding protein_coding MGP_C57BL6NJ_T0052488.1 MGP_C57BL6NJ_G0025631.1 mouse_genomes_project 19 47647030 47766021 + MGP_C57BL6NJ_P0052488 Cnnm2 protein_coding protein_coding MGP_C57BL6NJ_T0018163.1 MGP_C57BL6NJ_G0015773.1 mouse_genomes_project 19 7867005 7871022 + Gm10143 processed_transcript processed_transcript MGP_C57BL6NJ_T0018164.1 MGP_C57BL6NJ_G0015773.1 mouse_genomes_project 19 7867826 7871020 + Gm10143 processed_transcript processed_transcript MGP_C57BL6NJ_T0051268.1 MGP_C57BL6NJ_G0025177.1 mouse_genomes_project 19 3663132 3670307 - MGP_C57BL6NJ_P0051268 Slc22a12 protein_coding protein_coding MGP_C57BL6NJ_T0051269.1 MGP_C57BL6NJ_G0025177.1 mouse_genomes_project 19 3663352 3668837 - Slc22a12 protein_coding processed_transcript MGP_C57BL6NJ_T0051270.1 MGP_C57BL6NJ_G0025177.1 mouse_genomes_project 19 3665024 3669999 - MGP_C57BL6NJ_P0051270 Slc22a12 protein_coding protein_coding MGP_C57BL6NJ_T0051735.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14169426 14189798 - MGP_C57BL6NJ_P0051735 Psat1 protein_coding protein_coding MGP_C57BL6NJ_T0051736.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14169875 14189361 - MGP_C57BL6NJ_P0051736 Psat1 protein_coding protein_coding MGP_C57BL6NJ_T0051737.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14169878 14174461 - Psat1 protein_coding retained_intron MGP_C57BL6NJ_T0051738.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14179757 14211761 - MGP_C57BL6NJ_P0051738 Psat1 protein_coding protein_coding MGP_C57BL6NJ_T0051739.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14181587 14183086 - Psat1 protein_coding processed_transcript MGP_C57BL6NJ_T0051740.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14183151 14186148 - Psat1 protein_coding retained_intron MGP_C57BL6NJ_T0051741.1 MGP_C57BL6NJ_G0025374.1 mouse_genomes_project 19 14185238 14189669 - Psat1 protein_coding retained_intron MGP_C57BL6NJ_T0051312.1 MGP_C57BL6NJ_G0025194.1 mouse_genomes_project 19 4188741 4212128 - MGP_C57BL6NJ_P0051312 Fermt3 protein_coding protein_coding MGP_C57BL6NJ_T0051273.1 MGP_C57BL6NJ_G0025180.1 mouse_genomes_project 19 4083503 4086785 - Prdx5 protein_coding retained_intron MGP_C57BL6NJ_T0051274.1 MGP_C57BL6NJ_G0025180.1 mouse_genomes_project 19 4083512 4086913 - MGP_C57BL6NJ_P0051274 Prdx5 protein_coding protein_coding MGP_C57BL6NJ_T0051275.1 MGP_C57BL6NJ_G0025180.1 mouse_genomes_project 19 4083556 4085108 - MGP_C57BL6NJ_P0051275 Prdx5 protein_coding protein_coding MGP_C57BL6NJ_T0051276.1 MGP_C57BL6NJ_G0025180.1 mouse_genomes_project 19 4083652 4086424 - MGP_C57BL6NJ_P0051276 Prdx5 protein_coding protein_coding MGP_C57BL6NJ_T0004023.1 MGP_C57BL6NJ_G0003590.1 mouse_genomes_project 19 45810741 45817776 - Tlx1os antisense antisense MGP_C57BL6NJ_T0052582.1 MGP_C57BL6NJ_G0025667.1 mouse_genomes_project 19 55543391 55547192 + MGP_C57BL6NJ_P0052582 Adra2a protein_coding protein_coding MGP_C57BL6NJ_T0052091.1 MGP_C57BL6NJ_G0025497.1 mouse_genomes_project 19 37609625 37746089 + MGP_C57BL6NJ_P0052091 Exoc6 protein_coding protein_coding MGP_C57BL6NJ_T0011735.1 MGP_C57BL6NJ_G0009820.1 mouse_genomes_project 19 2910791 2910913 - Gm28006 misc_RNA misc_RNA MGP_C57BL6NJ_T0051710.1 MGP_C57BL6NJ_G0025350.1 mouse_genomes_project 19 11204394 11205495 - MGP_C57BL6NJ_P0051710 Olfr1459 protein_coding protein_coding MGP_C57BL6NJ_T0052334.1 MGP_C57BL6NJ_G0025580.1 mouse_genomes_project 19 44669058 44726246 - MGP_C57BL6NJ_P0052334 Pkd2l1 protein_coding protein_coding MGP_C57BL6NJ_T0052335.1 MGP_C57BL6NJ_G0025580.1 mouse_genomes_project 19 44669059 44726246 - Pkd2l1 protein_coding retained_intron MGP_C57BL6NJ_T0051128.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3170811 3175129 - MGP_C57BL6NJ_P0051128 Zfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0051129.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3170814 3173017 - Zfpl1 protein_coding retained_intron MGP_C57BL6NJ_T0051130.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3171217 3175101 - MGP_C57BL6NJ_P0051130 Zfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0051131.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172050 3174879 - MGP_C57BL6NJ_P0051131 Zfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0051132.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172380 3175080 - Zfpl1 protein_coding retained_intron MGP_C57BL6NJ_T0051133.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172400 3175090 - MGP_C57BL6NJ_P0051133 Zfpl1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051134.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172441 3174493 - Zfpl1 protein_coding retained_intron MGP_C57BL6NJ_T0051135.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172446 3175130 - MGP_C57BL6NJ_P0051135 Zfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0051136.1 MGP_C57BL6NJ_G0025158.1 mouse_genomes_project 19 3172791 3175113 - MGP_C57BL6NJ_P0051136 Zfpl1 protein_coding protein_coding MGP_C57BL6NJ_T0051114.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3156212 3170374 - MGP_C57BL6NJ_P0051114 Vps51 protein_coding protein_coding MGP_C57BL6NJ_T0051115.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3156360 3157690 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051116.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3156364 3167254 - MGP_C57BL6NJ_P0051116 Vps51 protein_coding protein_coding MGP_C57BL6NJ_T0051117.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3156421 3157521 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051118.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3156587 3157442 - MGP_C57BL6NJ_P0051118 Vps51 protein_coding protein_coding MGP_C57BL6NJ_T0051119.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3157119 3157984 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051120.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3157238 3158069 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051121.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3158451 3167260 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051122.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3159787 3166925 - Vps51 protein_coding retained_intron MGP_C57BL6NJ_T0051123.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3159852 3167255 - MGP_C57BL6NJ_P0051123 Vps51 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051124.1 MGP_C57BL6NJ_G0025155.1 mouse_genomes_project 19 3165959 3167257 - MGP_C57BL6NJ_P0051124 Vps51 protein_coding protein_coding MGP_C57BL6NJ_T0052627.1 MGP_C57BL6NJ_G0025678.1 mouse_genomes_project 19 58173131 58198227 + MGP_C57BL6NJ_P0052627 Plekhs1 protein_coding protein_coding MGP_C57BL6NJ_T0052628.1 MGP_C57BL6NJ_G0025678.1 mouse_genomes_project 19 58173131 58198227 + MGP_C57BL6NJ_P0052628 Plekhs1 protein_coding protein_coding MGP_C57BL6NJ_T0052629.1 MGP_C57BL6NJ_G0025678.1 mouse_genomes_project 19 58176064 58197346 + MGP_C57BL6NJ_P0052629 Plekhs1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101450.1 MGP_C57BL6NJ_G0039496.1 mouse_genomes_project 19 26828379 26828511 - Gm24782 snoRNA snoRNA MGP_C57BL6NJ_T0052435.1 MGP_C57BL6NJ_G0025615.1 mouse_genomes_project 19 46942065 46954705 - MGP_C57BL6NJ_P0052435 Pitx3 protein_coding protein_coding MGP_C57BL6NJ_T0052436.1 MGP_C57BL6NJ_G0025615.1 mouse_genomes_project 19 46942875 46943670 - Pitx3 protein_coding retained_intron MGP_C57BL6NJ_T0052437.1 MGP_C57BL6NJ_G0025615.1 mouse_genomes_project 19 46943412 46947364 - MGP_C57BL6NJ_P0052437 Pitx3 protein_coding protein_coding MGP_C57BL6NJ_T0052502.1 MGP_C57BL6NJ_G0025641.1 mouse_genomes_project 19 48082240 48082906 - MGP_C57BL6NJ_P0052502 Gm6970 protein_coding protein_coding MGP_C57BL6NJ_T0051669.1 MGP_C57BL6NJ_G0025324.1 mouse_genomes_project 19 10286486 10290735 + MGP_C57BL6NJ_P0051669 Olfr1434 protein_coding protein_coding MGP_C57BL6NJ_T0051819.1 MGP_C57BL6NJ_G0025407.1 mouse_genomes_project 19 22626415 22832552 + MGP_C57BL6NJ_P0051819 Apba1 protein_coding protein_coding MGP_C57BL6NJ_T0010512.1 MGP_C57BL6NJ_G0008597.1 mouse_genomes_project 19 4091197 4091288 - Mir6990 miRNA miRNA MGP_C57BL6NJ_T0051523.1 MGP_C57BL6NJ_G0025260.1 mouse_genomes_project 19 8146719 8148795 - MGP_C57BL6NJ_P0051523 Lrrc10b protein_coding protein_coding MGP_C57BL6NJ_T0052593.1 MGP_C57BL6NJ_G0025673.1 mouse_genomes_project 19 56954892 57278334 + MGP_C57BL6NJ_P0052593 Vti1a protein_coding protein_coding MGP_C57BL6NJ_T0052594.1 MGP_C57BL6NJ_G0025673.1 mouse_genomes_project 19 56954992 57279087 + MGP_C57BL6NJ_P0052594 Vti1a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052706.1 MGP_C57BL6NJ_G0025702.1 mouse_genomes_project 19 61251089 61302973 - MGP_C57BL6NJ_P0052706 Pdzd8 protein_coding protein_coding MGP_C57BL6NJ_T0051705.1 MGP_C57BL6NJ_G0025345.1 mouse_genomes_project 19 10987487 10988435 + MGP_C57BL6NJ_P0051705 Olfr1449 protein_coding protein_coding MGP_C57BL6NJ_T0052367.1 MGP_C57BL6NJ_G0025595.1 mouse_genomes_project 19 45643905 45659929 + MGP_C57BL6NJ_P0052367 Lzts2 protein_coding protein_coding MGP_C57BL6NJ_T0052368.1 MGP_C57BL6NJ_G0025595.1 mouse_genomes_project 19 45643939 45659929 + MGP_C57BL6NJ_P0052368 Lzts2 protein_coding protein_coding MGP_C57BL6NJ_T0052369.1 MGP_C57BL6NJ_G0025595.1 mouse_genomes_project 19 45649507 45659929 + MGP_C57BL6NJ_P0052369 Lzts2 protein_coding protein_coding MGP_C57BL6NJ_T0050906.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1684567 1762394 - MGP_C57BL6NJ_P0050906 Gm21992 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050915.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1732796 1762290 - MGP_C57BL6NJ_P0050915 Gm21992 protein_coding protein_coding MGP_C57BL6NJ_T0050916.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1732797 1761994 - MGP_C57BL6NJ_P0050916 Gm21992 protein_coding protein_coding MGP_C57BL6NJ_T0050919.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1735013 1762290 - MGP_C57BL6NJ_P0050919 Gm21992 protein_coding protein_coding MGP_C57BL6NJ_T0050923.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1738803 1762385 - Gm21992 protein_coding retained_intron MGP_C57BL6NJ_T0050924.1 MGP_C57BL6NJ_G0025084.1 mouse_genomes_project 19 1740279 1752794 - Gm21992 protein_coding processed_transcript MGP_C57BL6NJ_T0100148.1 MGP_C57BL6NJ_G0038194.1 mouse_genomes_project 19 4453151 4453255 + Gm22113 snRNA snRNA MGP_C57BL6NJ_T0052584.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56811996 56820917 + MGP_C57BL6NJ_P0052584 Tectb protein_coding protein_coding MGP_C57BL6NJ_T0052585.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56811999 56828608 + MGP_C57BL6NJ_P0052585 Tectb protein_coding protein_coding MGP_C57BL6NJ_T0052586.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56812148 56830052 + MGP_C57BL6NJ_P0052586 Tectb protein_coding protein_coding MGP_C57BL6NJ_T0052587.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56820829 56828433 + MGP_C57BL6NJ_P0052587 Tectb protein_coding protein_coding MGP_C57BL6NJ_T0052588.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56820881 56821576 + Tectb protein_coding retained_intron MGP_C57BL6NJ_T0052589.1 MGP_C57BL6NJ_G0025669.1 mouse_genomes_project 19 56823284 56830043 + Tectb protein_coding processed_transcript MGP_C57BL6NJ_T0051792.1 MGP_C57BL6NJ_G0025395.1 mouse_genomes_project 19 20093117 20177179 - MGP_C57BL6NJ_P0051792 Gda protein_coding protein_coding MGP_C57BL6NJ_T0051793.1 MGP_C57BL6NJ_G0025395.1 mouse_genomes_project 19 20120530 20177169 - Gda protein_coding retained_intron MGP_C57BL6NJ_T0050953.1 MGP_C57BL6NJ_G0025101.1 mouse_genomes_project 19 2033971 2040237 + MGP_C57BL6NJ_P0050953 Rin1 protein_coding protein_coding MGP_C57BL6NJ_T0050954.1 MGP_C57BL6NJ_G0025101.1 mouse_genomes_project 19 2034022 2040246 + MGP_C57BL6NJ_P0050954 Rin1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013697.1 MGP_C57BL6NJ_G0011742.1 mouse_genomes_project 19 10246246 10246402 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050891.1 MGP_C57BL6NJ_G0025077.1 mouse_genomes_project 19 1342617 1357752 - MGP_C57BL6NJ_P0050891 Rhod protein_coding protein_coding MGP_C57BL6NJ_T0050892.1 MGP_C57BL6NJ_G0025077.1 mouse_genomes_project 19 1342825 1357741 - MGP_C57BL6NJ_P0050892 Rhod protein_coding protein_coding MGP_C57BL6NJ_T0050893.1 MGP_C57BL6NJ_G0025077.1 mouse_genomes_project 19 1343385 1343714 - Rhod protein_coding processed_transcript MGP_C57BL6NJ_T0051373.1 MGP_C57BL6NJ_G0025212.1 mouse_genomes_project 19 5355584 5439738 - MGP_C57BL6NJ_P0051373 protein_coding protein_coding MGP_C57BL6NJ_T0051374.1 MGP_C57BL6NJ_G0025212.1 mouse_genomes_project 19 5355587 5439687 - MGP_C57BL6NJ_P0051374 protein_coding protein_coding MGP_C57BL6NJ_T0051712.1 MGP_C57BL6NJ_G0025352.1 mouse_genomes_project 19 11254033 11254957 + MGP_C57BL6NJ_P0051712 Olfr1462 protein_coding protein_coding MGP_C57BL6NJ_T0050950.1 MGP_C57BL6NJ_G0025098.1 mouse_genomes_project 19 2007125 2015085 + MGP_C57BL6NJ_P0050950 Slc29a2 protein_coding protein_coding MGP_C57BL6NJ_T0051052.1 MGP_C57BL6NJ_G0025137.1 mouse_genomes_project 19 2759428 2782596 - MGP_C57BL6NJ_P0051052 Ehbp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0051053.1 MGP_C57BL6NJ_G0025137.1 mouse_genomes_project 19 2759428 2782596 - MGP_C57BL6NJ_P0051053 Ehbp1l1 protein_coding protein_coding MGP_C57BL6NJ_T0100161.1 MGP_C57BL6NJ_G0038207.1 mouse_genomes_project 19 37518312 37518418 + Gm23026 snRNA snRNA MGP_C57BL6NJ_T0101432.1 MGP_C57BL6NJ_G0039478.1 mouse_genomes_project 19 6112718 6112790 + Gm25855 snoRNA snoRNA MGP_C57BL6NJ_T0051491.1 MGP_C57BL6NJ_G0025248.1 mouse_genomes_project 19 7464358 7491269 - MGP_C57BL6NJ_P0051491 Incenp protein_coding protein_coding MGP_C57BL6NJ_T0052560.1 MGP_C57BL6NJ_G0025657.1 mouse_genomes_project 19 54557071 54669595 + MGP_C57BL6NJ_P0052560 Add3 protein_coding protein_coding MGP_C57BL6NJ_T0052561.1 MGP_C57BL6NJ_G0025657.1 mouse_genomes_project 19 54559382 54669595 + MGP_C57BL6NJ_P0052561 Add3 protein_coding protein_coding MGP_C57BL6NJ_T0052562.1 MGP_C57BL6NJ_G0025657.1 mouse_genomes_project 19 54560623 54669595 + MGP_C57BL6NJ_P0052562 Add3 protein_coding protein_coding MGP_C57BL6NJ_T0052275.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43183520 43209225 - MGP_C57BL6NJ_P0052275 Hps1 protein_coding protein_coding MGP_C57BL6NJ_T0052276.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43183611 43209206 - Hps1 protein_coding retained_intron MGP_C57BL6NJ_T0052277.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43183611 43207894 - MGP_C57BL6NJ_P0052277 Hps1 protein_coding protein_coding MGP_C57BL6NJ_T0052278.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43183613 43209223 - MGP_C57BL6NJ_P0052278 Hps1 protein_coding protein_coding MGP_C57BL6NJ_T0052279.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43183998 43186245 - MGP_C57BL6NJ_P0052279 Hps1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052280.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43186496 43209212 - MGP_C57BL6NJ_P0052280 Hps1 protein_coding protein_coding MGP_C57BL6NJ_T0052281.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43186895 43207510 - MGP_C57BL6NJ_P0052281 Hps1 protein_coding protein_coding MGP_C57BL6NJ_T0052282.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43188780 43192292 - Hps1 protein_coding retained_intron MGP_C57BL6NJ_T0052283.1 MGP_C57BL6NJ_G0025563.1 mouse_genomes_project 19 43196186 43199186 - Hps1 protein_coding retained_intron MGP_C57BL6NJ_T0052355.1 MGP_C57BL6NJ_G0025589.1 mouse_genomes_project 19 45148723 45149826 + Hif1an protein_coding retained_intron MGP_C57BL6NJ_T0052356.1 MGP_C57BL6NJ_G0025589.1 mouse_genomes_project 19 45148723 45162139 + MGP_C57BL6NJ_P0052356 Hif1an protein_coding protein_coding MGP_C57BL6NJ_T0052004.1 MGP_C57BL6NJ_G0025466.1 mouse_genomes_project 19 33742696 33762195 + MGP_C57BL6NJ_P0052004 Lipn protein_coding protein_coding MGP_C57BL6NJ_T0052005.1 MGP_C57BL6NJ_G0025466.1 mouse_genomes_project 19 33742716 33750076 + MGP_C57BL6NJ_P0052005 Lipn protein_coding protein_coding MGP_C57BL6NJ_T0052006.1 MGP_C57BL6NJ_G0025466.1 mouse_genomes_project 19 33742867 33757563 + MGP_C57BL6NJ_P0052006 Lipn protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050931.1 MGP_C57BL6NJ_G0025091.1 mouse_genomes_project 19 1816926 1819262 - Actn3 protein_coding processed_transcript MGP_C57BL6NJ_T0050932.1 MGP_C57BL6NJ_G0025091.1 mouse_genomes_project 19 1816926 1841853 - MGP_C57BL6NJ_P0050932 Actn3 protein_coding protein_coding MGP_C57BL6NJ_T0052066.1 MGP_C57BL6NJ_G0025491.1 mouse_genomes_project 19 36875068 36975164 + MGP_C57BL6NJ_P0052066 Btaf1 protein_coding protein_coding MGP_C57BL6NJ_T0051495.1 MGP_C57BL6NJ_G0025251.1 mouse_genomes_project 19 7646639 7669158 + MGP_C57BL6NJ_P0051495 Rab3il1 protein_coding protein_coding MGP_C57BL6NJ_T0051496.1 MGP_C57BL6NJ_G0025251.1 mouse_genomes_project 19 7649817 7677037 + MGP_C57BL6NJ_P0051496 Rab3il1 protein_coding protein_coding MGP_C57BL6NJ_T0051497.1 MGP_C57BL6NJ_G0025251.1 mouse_genomes_project 19 7649972 7677043 + MGP_C57BL6NJ_P0051497 Rab3il1 protein_coding protein_coding MGP_C57BL6NJ_T0051498.1 MGP_C57BL6NJ_G0025251.1 mouse_genomes_project 19 7673251 7675392 + Rab3il1 protein_coding retained_intron MGP_C57BL6NJ_T0051362.1 MGP_C57BL6NJ_G0025208.1 mouse_genomes_project 19 4847093 4857626 - MGP_C57BL6NJ_P0051362 Lgals12 protein_coding protein_coding MGP_C57BL6NJ_T0051363.1 MGP_C57BL6NJ_G0025208.1 mouse_genomes_project 19 4847094 4857611 - MGP_C57BL6NJ_P0051363 Lgals12 protein_coding protein_coding MGP_C57BL6NJ_T0051364.1 MGP_C57BL6NJ_G0025208.1 mouse_genomes_project 19 4847147 4857536 - MGP_C57BL6NJ_P0051364 Lgals12 protein_coding protein_coding MGP_C57BL6NJ_T0052094.1 MGP_C57BL6NJ_G0025500.1 mouse_genomes_project 19 37972457 38123470 - MGP_C57BL6NJ_P0052094 Myof protein_coding protein_coding MGP_C57BL6NJ_T0052095.1 MGP_C57BL6NJ_G0025500.1 mouse_genomes_project 19 37972457 38123470 - MGP_C57BL6NJ_P0052095 Myof protein_coding protein_coding MGP_C57BL6NJ_T0052096.1 MGP_C57BL6NJ_G0025500.1 mouse_genomes_project 19 37973150 38123216 - MGP_C57BL6NJ_P0052096 Myof protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052455.1 MGP_C57BL6NJ_G0025618.1 mouse_genomes_project 19 47143300 47149071 - MGP_C57BL6NJ_P0052455 Psd protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052456.1 MGP_C57BL6NJ_G0025618.1 mouse_genomes_project 19 47143307 47159908 - MGP_C57BL6NJ_P0052456 Psd protein_coding protein_coding MGP_C57BL6NJ_T0052457.1 MGP_C57BL6NJ_G0025618.1 mouse_genomes_project 19 47143307 47159908 - MGP_C57BL6NJ_P0052457 Psd protein_coding protein_coding MGP_C57BL6NJ_T0052458.1 MGP_C57BL6NJ_G0025618.1 mouse_genomes_project 19 47149924 47159347 - MGP_C57BL6NJ_P0052458 Psd protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051815.1 MGP_C57BL6NJ_G0025403.1 mouse_genomes_project 19 22139364 22298049 - MGP_C57BL6NJ_P0051815 Mamdc2 protein_coding protein_coding MGP_C57BL6NJ_T0051948.1 MGP_C57BL6NJ_G0025445.1 mouse_genomes_project 19 29052773 29057348 - MGP_C57BL6NJ_P0051948 Ranbp6 protein_coding protein_coding MGP_C57BL6NJ_T0052567.1 MGP_C57BL6NJ_G0025661.1 mouse_genomes_project 19 54972443 54988696 + MGP_C57BL6NJ_P0052567 Dusp5 protein_coding protein_coding MGP_C57BL6NJ_T0051377.1 MGP_C57BL6NJ_G0025215.1 mouse_genomes_project 19 5967831 5988518 + MGP_C57BL6NJ_P0051377 Slc22a8 protein_coding protein_coding MGP_C57BL6NJ_T0051378.1 MGP_C57BL6NJ_G0025215.1 mouse_genomes_project 19 5967831 5988518 + MGP_C57BL6NJ_P0051378 Slc22a8 protein_coding protein_coding MGP_C57BL6NJ_T0003999.1 MGP_C57BL6NJ_G0003574.1 mouse_genomes_project 19 3458250 3468154 - Gm14966 antisense antisense MGP_C57BL6NJ_T0004000.1 MGP_C57BL6NJ_G0003574.1 mouse_genomes_project 19 3458326 3468378 - Gm14966 antisense antisense MGP_C57BL6NJ_T0052093.1 MGP_C57BL6NJ_G0025499.1 mouse_genomes_project 19 37760633 37764354 + MGP_C57BL6NJ_P0052093 Cyp26a1 protein_coding protein_coding MGP_C57BL6NJ_T0051298.1 MGP_C57BL6NJ_G0025187.1 mouse_genomes_project 19 4139112 4155064 - MGP_C57BL6NJ_P0051298 Plcb3 protein_coding protein_coding MGP_C57BL6NJ_T0102604.1 MGP_C57BL6NJ_G0040417.1 mouse_genomes_project 19 47180500 47182602 - unitary_pseudogene processed_transcript MGP_C57BL6NJ_T0102605.1 MGP_C57BL6NJ_G0040417.1 mouse_genomes_project 19 47181198 47182602 - unitary_pseudogene unitary_pseudogene MGP_C57BL6NJ_T0051785.1 MGP_C57BL6NJ_G0025392.1 mouse_genomes_project 19 19341830 19384019 - MGP_C57BL6NJ_P0051785 Aldh1a7 protein_coding protein_coding MGP_C57BL6NJ_T0010527.1 MGP_C57BL6NJ_G0008612.1 mouse_genomes_project 19 23911810 23911879 - Mir3084-1 miRNA miRNA MGP_C57BL6NJ_T0099219.1 MGP_C57BL6NJ_G0037283.1 mouse_genomes_project 19 37139358 37139436 - Gm22714 ribozyme ribozyme MGP_C57BL6NJ_T0052026.1 MGP_C57BL6NJ_G0025477.1 mouse_genomes_project 19 34319608 34321581 + MGP_C57BL6NJ_P0052026 protein_coding protein_coding MGP_C57BL6NJ_T0052710.1 MGP_C57BL6NJ_G0025704.1 mouse_genomes_project 19 61904392 61946297 - MGP_C57BL6NJ_P0052710 Rab11fip2 protein_coding protein_coding MGP_C57BL6NJ_T0052711.1 MGP_C57BL6NJ_G0025704.1 mouse_genomes_project 19 61905210 61946661 - MGP_C57BL6NJ_P0052711 Rab11fip2 protein_coding protein_coding MGP_C57BL6NJ_T0052498.1 MGP_C57BL6NJ_G0025638.1 mouse_genomes_project 19 48003873 48037031 - MGP_C57BL6NJ_P0052498 Calhm2 protein_coding protein_coding MGP_C57BL6NJ_T0052499.1 MGP_C57BL6NJ_G0025638.1 mouse_genomes_project 19 48030581 48037031 - MGP_C57BL6NJ_P0052499 Calhm2 protein_coding protein_coding MGP_C57BL6NJ_T0011733.1 MGP_C57BL6NJ_G0009818.1 mouse_genomes_project 19 2910161 2910313 - Gm27533 misc_RNA misc_RNA MGP_C57BL6NJ_T0010513.1 MGP_C57BL6NJ_G0008598.1 mouse_genomes_project 19 4647577 4647647 + Mir6991 miRNA miRNA MGP_C57BL6NJ_T0052637.1 MGP_C57BL6NJ_G0025681.1 mouse_genomes_project 19 58469177 58473439 + MGP_C57BL6NJ_P0052637 Adrb1 protein_coding protein_coding MGP_C57BL6NJ_T0052644.1 MGP_C57BL6NJ_G0025683.1 mouse_genomes_project 19 58582839 58629464 + MGP_C57BL6NJ_P0052644 Tdrd1 protein_coding protein_coding MGP_C57BL6NJ_T0052645.1 MGP_C57BL6NJ_G0025683.1 mouse_genomes_project 19 58582905 58629464 + MGP_C57BL6NJ_P0052645 Tdrd1 protein_coding protein_coding MGP_C57BL6NJ_T0052646.1 MGP_C57BL6NJ_G0025683.1 mouse_genomes_project 19 58582916 58629464 + MGP_C57BL6NJ_P0052646 Tdrd1 protein_coding protein_coding MGP_C57BL6NJ_T0052647.1 MGP_C57BL6NJ_G0025683.1 mouse_genomes_project 19 58588422 58629464 + MGP_C57BL6NJ_P0052647 Tdrd1 protein_coding protein_coding MGP_C57BL6NJ_T0052702.1 MGP_C57BL6NJ_G0025699.1 mouse_genomes_project 19 61120028 61123898 - MGP_C57BL6NJ_P0052702 Vax1 protein_coding protein_coding MGP_C57BL6NJ_T0052703.1 MGP_C57BL6NJ_G0025699.1 mouse_genomes_project 19 61120439 61120822 - Vax1 protein_coding processed_transcript MGP_C57BL6NJ_T0051686.1 MGP_C57BL6NJ_G0025334.1 mouse_genomes_project 19 10701548 10702613 + MGP_C57BL6NJ_P0051686 Olfr1442 protein_coding protein_coding MGP_C57BL6NJ_T0051391.1 MGP_C57BL6NJ_G0025220.1 mouse_genomes_project 19 6132233 6132741 + MGP_C57BL6NJ_P0051391 1700092M07Rik protein_coding protein_coding MGP_C57BL6NJ_T0051392.1 MGP_C57BL6NJ_G0025220.1 mouse_genomes_project 19 6132277 6132740 + 1700092M07Rik protein_coding retained_intron MGP_C57BL6NJ_T0101433.1 MGP_C57BL6NJ_G0039479.1 mouse_genomes_project 19 6112976 6113051 + Gm25894 snoRNA snoRNA MGP_C57BL6NJ_T0018142.1 MGP_C57BL6NJ_G0015770.1 mouse_genomes_project 19 3516032 3525243 - Gm14965 processed_transcript antisense MGP_C57BL6NJ_T0018143.1 MGP_C57BL6NJ_G0015770.1 mouse_genomes_project 19 3523446 3525243 - Gm14965 processed_transcript retained_intron MGP_C57BL6NJ_T0051390.1 MGP_C57BL6NJ_G0025219.1 mouse_genomes_project 19 6126849 6132139 + MGP_C57BL6NJ_P0051390 Wdr74 protein_coding protein_coding MGP_C57BL6NJ_T0007285.1 MGP_C57BL6NJ_G0005978.1 mouse_genomes_project 19 59274628 59276186 - Gm26874 lincRNA lincRNA MGP_C57BL6NJ_T0100150.1 MGP_C57BL6NJ_G0038196.1 mouse_genomes_project 19 11375250 11375357 - Gm22443 snRNA snRNA MGP_C57BL6NJ_T0010526.1 MGP_C57BL6NJ_G0008611.1 mouse_genomes_project 19 21969924 21970045 + Mir1192 miRNA miRNA MGP_C57BL6NJ_T0050952.1 MGP_C57BL6NJ_G0025100.1 mouse_genomes_project 19 2024567 2033081 + MGP_C57BL6NJ_P0050952 Brms1 protein_coding protein_coding MGP_C57BL6NJ_T0051486.1 MGP_C57BL6NJ_G0025244.1 mouse_genomes_project 19 6532180 6536489 - MGP_C57BL6NJ_P0051486 Scgb1a1 protein_coding protein_coding MGP_C57BL6NJ_T0011738.1 MGP_C57BL6NJ_G0009823.1 mouse_genomes_project 19 15420150 15420411 - Gm27796 misc_RNA misc_RNA MGP_C57BL6NJ_T0051665.1 MGP_C57BL6NJ_G0025320.1 mouse_genomes_project 19 10075252 10076197 - MGP_C57BL6NJ_P0051665 Olfr1428 protein_coding protein_coding MGP_C57BL6NJ_T0099360.1 MGP_C57BL6NJ_G0037418.1 mouse_genomes_project 19 27744080 27746842 - 4933413C19Rik sense_intronic sense_intronic MGP_C57BL6NJ_T0051707.1 MGP_C57BL6NJ_G0025347.1 mouse_genomes_project 19 11062586 11063519 + MGP_C57BL6NJ_P0051707 Olfr1451 protein_coding protein_coding MGP_C57BL6NJ_T0051760.1 MGP_C57BL6NJ_G0025384.1 mouse_genomes_project 19 17035923 17092204 - MGP_C57BL6NJ_P0051760 Ostf1 protein_coding protein_coding MGP_C57BL6NJ_T0051761.1 MGP_C57BL6NJ_G0025384.1 mouse_genomes_project 19 17037587 17092155 - Ostf1 protein_coding retained_intron MGP_C57BL6NJ_T0051762.1 MGP_C57BL6NJ_G0025384.1 mouse_genomes_project 19 17049977 17092133 - Ostf1 protein_coding retained_intron MGP_C57BL6NJ_T0051383.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6092957 6111947 - MGP_C57BL6NJ_P0051383 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0051384.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6094699 6098790 - MGP_C57BL6NJ_P0051384 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0051385.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6095125 6098791 - MGP_C57BL6NJ_P0051385 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0051386.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6095157 6099868 - MGP_C57BL6NJ_P0051386 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0051387.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6098547 6111891 - Slc3a2 protein_coding retained_intron MGP_C57BL6NJ_T0051388.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6098843 6099531 - MGP_C57BL6NJ_P0051388 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0051389.1 MGP_C57BL6NJ_G0025218.1 mouse_genomes_project 19 6098854 6099618 - MGP_C57BL6NJ_P0051389 Slc3a2 protein_coding protein_coding MGP_C57BL6NJ_T0052366.1 MGP_C57BL6NJ_G0025594.1 mouse_genomes_project 19 45635341 45641492 + MGP_C57BL6NJ_P0052366 Peo1 protein_coding protein_coding MGP_C57BL6NJ_T0051158.1 MGP_C57BL6NJ_G0025165.1 mouse_genomes_project 19 3286863 3327929 + MGP_C57BL6NJ_P0051158 Majin protein_coding protein_coding MGP_C57BL6NJ_T0051159.1 MGP_C57BL6NJ_G0025165.1 mouse_genomes_project 19 3286942 3327935 + MGP_C57BL6NJ_P0051159 Majin protein_coding protein_coding MGP_C57BL6NJ_T0051583.1 MGP_C57BL6NJ_G0025285.1 mouse_genomes_project 19 8872302 8910859 - MGP_C57BL6NJ_P0051583 1700017D01Rik protein_coding protein_coding MGP_C57BL6NJ_T0051584.1 MGP_C57BL6NJ_G0025285.1 mouse_genomes_project 19 8888465 8890991 - 1700017D01Rik protein_coding retained_intron MGP_C57BL6NJ_T0052219.1 MGP_C57BL6NJ_G0025546.1 mouse_genomes_project 19 42311636 42322117 + MGP_C57BL6NJ_P0052219 Zdhhc16 protein_coding protein_coding MGP_C57BL6NJ_T0052220.1 MGP_C57BL6NJ_G0025546.1 mouse_genomes_project 19 42311706 42322125 + MGP_C57BL6NJ_P0052220 Zdhhc16 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010507.1 MGP_C57BL6NJ_G0008592.1 mouse_genomes_project 19 3367948 3368034 + Mir194-2 miRNA miRNA MGP_C57BL6NJ_T0051772.1 MGP_C57BL6NJ_G0025388.1 mouse_genomes_project 19 17230081 17384733 + MGP_C57BL6NJ_P0051772 Trpm6 protein_coding protein_coding MGP_C57BL6NJ_T0051506.1 MGP_C57BL6NJ_G0025256.1 mouse_genomes_project 19 7874579 7878390 + Tmem258 protein_coding processed_transcript MGP_C57BL6NJ_T0051507.1 MGP_C57BL6NJ_G0025256.1 mouse_genomes_project 19 7874579 7878390 + MGP_C57BL6NJ_P0051507 Tmem258 protein_coding protein_coding MGP_C57BL6NJ_T0051508.1 MGP_C57BL6NJ_G0025256.1 mouse_genomes_project 19 7874783 7878384 + Tmem258 protein_coding retained_intron MGP_C57BL6NJ_T0051509.1 MGP_C57BL6NJ_G0025256.1 mouse_genomes_project 19 7876598 7878390 + MGP_C57BL6NJ_P0051509 Tmem258 protein_coding protein_coding MGP_C57BL6NJ_T0007237.1 MGP_C57BL6NJ_G0005944.1 mouse_genomes_project 19 9144012 9145625 + Gm28935 lincRNA lincRNA MGP_C57BL6NJ_T0051025.1 MGP_C57BL6NJ_G0025128.1 mouse_genomes_project 19 2578222 2589661 - MGP_C57BL6NJ_P0051025 Ovol1 protein_coding protein_coding MGP_C57BL6NJ_T0018186.1 MGP_C57BL6NJ_G0015781.1 mouse_genomes_project 19 43208278 43210611 + Gm16244 processed_transcript processed_transcript MGP_C57BL6NJ_T0018187.1 MGP_C57BL6NJ_G0015781.1 mouse_genomes_project 19 43208356 43209508 + Gm16244 processed_transcript processed_transcript MGP_C57BL6NJ_T0051648.1 MGP_C57BL6NJ_G0025307.1 mouse_genomes_project 19 9610786 9615316 + MGP_C57BL6NJ_P0051648 Mrpl16 protein_coding protein_coding MGP_C57BL6NJ_T0013701.1 MGP_C57BL6NJ_G0011746.1 mouse_genomes_project 19 13163741 13166644 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052522.1 MGP_C57BL6NJ_G0025646.1 mouse_genomes_project 19 48597051 48644998 - MGP_C57BL6NJ_P0052522 Col17a1 protein_coding protein_coding MGP_C57BL6NJ_T0052523.1 MGP_C57BL6NJ_G0025646.1 mouse_genomes_project 19 48597051 48644998 - MGP_C57BL6NJ_P0052523 Col17a1 protein_coding protein_coding MGP_C57BL6NJ_T0052524.1 MGP_C57BL6NJ_G0025646.1 mouse_genomes_project 19 48598807 48600303 - Col17a1 protein_coding processed_transcript MGP_C57BL6NJ_T0052525.1 MGP_C57BL6NJ_G0025646.1 mouse_genomes_project 19 48621244 48622951 - Col17a1 protein_coding processed_transcript MGP_C57BL6NJ_T0100154.1 MGP_C57BL6NJ_G0038200.1 mouse_genomes_project 19 22133023 22133130 + Gm24263 snRNA snRNA MGP_C57BL6NJ_T0051165.1 MGP_C57BL6NJ_G0025168.1 mouse_genomes_project 19 3345376 3365641 + MGP_C57BL6NJ_P0051165 Atg2a protein_coding protein_coding MGP_C57BL6NJ_T0051166.1 MGP_C57BL6NJ_G0025168.1 mouse_genomes_project 19 3349173 3365601 + MGP_C57BL6NJ_P0051166 Atg2a protein_coding protein_coding MGP_C57BL6NJ_T0051167.1 MGP_C57BL6NJ_G0025168.1 mouse_genomes_project 19 3354805 3355613 + Atg2a protein_coding retained_intron MGP_C57BL6NJ_T0051168.1 MGP_C57BL6NJ_G0025168.1 mouse_genomes_project 19 3359688 3362937 + Atg2a protein_coding retained_intron MGP_C57BL6NJ_T0051169.1 MGP_C57BL6NJ_G0025168.1 mouse_genomes_project 19 3361658 3363438 + Atg2a protein_coding retained_intron MGP_C57BL6NJ_T0013702.1 MGP_C57BL6NJ_G0011747.1 mouse_genomes_project 19 14208084 14208640 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051658.1 MGP_C57BL6NJ_G0025314.1 mouse_genomes_project 19 9849998 9892077 + MGP_C57BL6NJ_P0051658 Osbp protein_coding protein_coding MGP_C57BL6NJ_T0051659.1 MGP_C57BL6NJ_G0025314.1 mouse_genomes_project 19 9861041 9892001 + MGP_C57BL6NJ_P0051659 Osbp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050855.1 MGP_C57BL6NJ_G0025071.1 mouse_genomes_project 19 1095416 1104681 + MGP_C57BL6NJ_P0050855 Clcf1 protein_coding protein_coding MGP_C57BL6NJ_T0050856.1 MGP_C57BL6NJ_G0025071.1 mouse_genomes_project 19 1095442 1104681 + Clcf1 protein_coding retained_intron MGP_C57BL6NJ_T0050857.1 MGP_C57BL6NJ_G0025071.1 mouse_genomes_project 19 1095483 1104681 + MGP_C57BL6NJ_P0050857 Clcf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050858.1 MGP_C57BL6NJ_G0025071.1 mouse_genomes_project 19 1095772 1103704 + Clcf1 protein_coding processed_transcript MGP_C57BL6NJ_T0051272.1 MGP_C57BL6NJ_G0025179.1 mouse_genomes_project 19 4019649 4033238 - MGP_C57BL6NJ_P0051272 Ccdc88b protein_coding protein_coding MGP_C57BL6NJ_T0051024.1 MGP_C57BL6NJ_G0025127.1 mouse_genomes_project 19 2530078 2531099 - MGP_C57BL6NJ_P0051024 1700020D05Rik protein_coding protein_coding MGP_C57BL6NJ_T0051637.1 MGP_C57BL6NJ_G0025302.1 mouse_genomes_project 19 9469487 9480797 - MGP_C57BL6NJ_P0051637 Ms4a3 protein_coding protein_coding MGP_C57BL6NJ_T0051638.1 MGP_C57BL6NJ_G0025302.1 mouse_genomes_project 19 9469490 9480826 - MGP_C57BL6NJ_P0051638 Ms4a3 protein_coding protein_coding MGP_C57BL6NJ_T0051639.1 MGP_C57BL6NJ_G0025302.1 mouse_genomes_project 19 9471893 9480843 - Ms4a3 protein_coding retained_intron MGP_C57BL6NJ_T0052138.1 MGP_C57BL6NJ_G0025515.1 mouse_genomes_project 19 39434849 39495421 + MGP_C57BL6NJ_P0052138 Cyp2c29 protein_coding protein_coding MGP_C57BL6NJ_T0052139.1 MGP_C57BL6NJ_G0025515.1 mouse_genomes_project 19 39447192 39495472 + MGP_C57BL6NJ_P0052139 Cyp2c29 protein_coding protein_coding MGP_C57BL6NJ_T0052140.1 MGP_C57BL6NJ_G0025515.1 mouse_genomes_project 19 39447192 39495486 + MGP_C57BL6NJ_P0052140 Cyp2c29 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0101443.1 MGP_C57BL6NJ_G0039489.1 mouse_genomes_project 19 11767770 11767902 - Gm24124 snoRNA snoRNA MGP_C57BL6NJ_T0007238.1 MGP_C57BL6NJ_G0005945.1 mouse_genomes_project 19 9264558 9267841 + lincRNA lincRNA MGP_C57BL6NJ_T0010536.1 MGP_C57BL6NJ_G0008621.1 mouse_genomes_project 19 39185952 39186016 - Gm23800 miRNA miRNA MGP_C57BL6NJ_T0051095.1 MGP_C57BL6NJ_G0025151.1 mouse_genomes_project 19 3140163 3144285 - MGP_C57BL6NJ_P0051095 Mrpl49 protein_coding protein_coding MGP_C57BL6NJ_T0010547.1 MGP_C57BL6NJ_G0008632.1 mouse_genomes_project 19 50863024 50863103 - Gm27935 miRNA miRNA MGP_C57BL6NJ_T0051667.1 MGP_C57BL6NJ_G0025322.1 mouse_genomes_project 19 10272479 10273615 + MGP_C57BL6NJ_P0051667 protein_coding protein_coding MGP_C57BL6NJ_T0052160.1 MGP_C57BL6NJ_G0025526.1 mouse_genomes_project 19 40581420 40688059 - MGP_C57BL6NJ_P0052160 Sorbs1 protein_coding protein_coding MGP_C57BL6NJ_T0052161.1 MGP_C57BL6NJ_G0025526.1 mouse_genomes_project 19 40581420 40688059 - MGP_C57BL6NJ_P0052161 Sorbs1 protein_coding protein_coding MGP_C57BL6NJ_T0052162.1 MGP_C57BL6NJ_G0025526.1 mouse_genomes_project 19 40581420 40688059 - MGP_C57BL6NJ_P0052162 Sorbs1 protein_coding protein_coding MGP_C57BL6NJ_T0052163.1 MGP_C57BL6NJ_G0025526.1 mouse_genomes_project 19 40581420 40688059 - MGP_C57BL6NJ_P0052163 Sorbs1 protein_coding protein_coding MGP_C57BL6NJ_T0052164.1 MGP_C57BL6NJ_G0025526.1 mouse_genomes_project 19 40595866 40688059 - MGP_C57BL6NJ_P0052164 Sorbs1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052089.1 MGP_C57BL6NJ_G0025496.1 mouse_genomes_project 19 37473919 37479922 + MGP_C57BL6NJ_P0052089 Hhex protein_coding protein_coding MGP_C57BL6NJ_T0052090.1 MGP_C57BL6NJ_G0025496.1 mouse_genomes_project 19 37475917 37479863 + MGP_C57BL6NJ_P0052090 Hhex protein_coding protein_coding MGP_C57BL6NJ_T0050841.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034628 1040956 - MGP_C57BL6NJ_P0050841 Rps6kb2 protein_coding protein_coding MGP_C57BL6NJ_T0050842.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034634 1041007 - MGP_C57BL6NJ_P0050842 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050843.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034637 1041027 - Rps6kb2 protein_coding retained_intron MGP_C57BL6NJ_T0050844.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034637 1035995 - Rps6kb2 protein_coding retained_intron MGP_C57BL6NJ_T0050845.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034637 1041011 - MGP_C57BL6NJ_P0050845 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050846.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034828 1040041 - Rps6kb2 protein_coding processed_transcript MGP_C57BL6NJ_T0050847.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1034828 1040996 - MGP_C57BL6NJ_P0050847 Rps6kb2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050848.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1039970 1041011 - Rps6kb2 protein_coding processed_transcript MGP_C57BL6NJ_T0050849.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1040227 1041041 - Rps6kb2 protein_coding retained_intron MGP_C57BL6NJ_T0050850.1 MGP_C57BL6NJ_G0025066.1 mouse_genomes_project 19 1040525 1041065 - Rps6kb2 protein_coding processed_transcript MGP_C57BL6NJ_T0007236.1 MGP_C57BL6NJ_G0005943.1 mouse_genomes_project 19 8804786 8809446 - lincRNA lincRNA MGP_C57BL6NJ_T0010531.1 MGP_C57BL6NJ_G0008616.1 mouse_genomes_project 19 34081431 34081540 - Gm23060 miRNA miRNA MGP_C57BL6NJ_T0051784.1 MGP_C57BL6NJ_G0025391.1 mouse_genomes_project 19 19246237 19291523 + MGP_C57BL6NJ_P0051784 Aldh1a1 protein_coding protein_coding MGP_C57BL6NJ_T0052592.1 MGP_C57BL6NJ_G0025672.1 mouse_genomes_project 19 56935213 56954574 - MGP_C57BL6NJ_P0052592 Zdhhc6 protein_coding protein_coding MGP_C57BL6NJ_T0050951.1 MGP_C57BL6NJ_G0025099.1 mouse_genomes_project 19 2021989 2024298 + MGP_C57BL6NJ_P0050951 B4gat1 protein_coding protein_coding MGP_C57BL6NJ_T0051493.1 MGP_C57BL6NJ_G0025250.1 mouse_genomes_project 19 7611761 7628138 - MGP_C57BL6NJ_P0051493 Best1 protein_coding protein_coding MGP_C57BL6NJ_T0051494.1 MGP_C57BL6NJ_G0025250.1 mouse_genomes_project 19 7617135 7619503 - Best1 protein_coding processed_transcript MGP_C57BL6NJ_T0051314.1 MGP_C57BL6NJ_G0025196.1 mouse_genomes_project 19 4258078 4402090 + MGP_C57BL6NJ_P0051314 Macrod1 protein_coding protein_coding MGP_C57BL6NJ_T0051773.1 MGP_C57BL6NJ_G0025389.1 mouse_genomes_project 19 17423136 17493782 - MGP_C57BL6NJ_P0051773 Rorb protein_coding protein_coding MGP_C57BL6NJ_T0051774.1 MGP_C57BL6NJ_G0025389.1 mouse_genomes_project 19 17430458 17604833 - MGP_C57BL6NJ_P0051774 Rorb protein_coding protein_coding MGP_C57BL6NJ_T0051775.1 MGP_C57BL6NJ_G0025389.1 mouse_genomes_project 19 17468531 17493765 - Rorb protein_coding retained_intron MGP_C57BL6NJ_T0051776.1 MGP_C57BL6NJ_G0025389.1 mouse_genomes_project 19 17468549 17493776 - Rorb protein_coding retained_intron MGP_C57BL6NJ_T0052055.1 MGP_C57BL6NJ_G0025488.1 mouse_genomes_project 19 36661710 36666627 - MGP_C57BL6NJ_P0052055 Ppp1r3c protein_coding protein_coding MGP_C57BL6NJ_T0052088.1 MGP_C57BL6NJ_G0025495.1 mouse_genomes_project 19 37407338 37460753 + MGP_C57BL6NJ_P0052088 Kif11 protein_coding protein_coding MGP_C57BL6NJ_T0007261.1 MGP_C57BL6NJ_G0005961.1 mouse_genomes_project 19 38131666 38134419 - I830134H01Rik lincRNA lincRNA MGP_C57BL6NJ_T0007262.1 MGP_C57BL6NJ_G0005961.1 mouse_genomes_project 19 38131776 38134419 - I830134H01Rik lincRNA lincRNA MGP_C57BL6NJ_T0011741.1 MGP_C57BL6NJ_G0009826.1 mouse_genomes_project 19 30051993 30052311 + Gm23426 misc_RNA misc_RNA MGP_C57BL6NJ_T0101461.1 MGP_C57BL6NJ_G0039507.1 mouse_genomes_project 19 63079120 63079249 - Gm22520 snoRNA snoRNA MGP_C57BL6NJ_T0051907.1 MGP_C57BL6NJ_G0025431.1 mouse_genomes_project 19 28147323 28150182 + MGP_C57BL6NJ_P0051907 Plpp6 protein_coding protein_coding MGP_C57BL6NJ_T0013690.1 MGP_C57BL6NJ_G0011735.1 mouse_genomes_project 19 4946567 4947683 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004031.1 MGP_C57BL6NJ_G0003598.1 mouse_genomes_project 19 61385524 61420651 - Emx2os antisense antisense MGP_C57BL6NJ_T0051063.1 MGP_C57BL6NJ_G0025140.1 mouse_genomes_project 19 2799914 2815621 + MGP_C57BL6NJ_P0051063 Ltbp3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004014.1 MGP_C57BL6NJ_G0003584.1 mouse_genomes_project 19 28232659 28235144 + 1700018L02Rik antisense antisense MGP_C57BL6NJ_T0051743.1 MGP_C57BL6NJ_G0025376.1 mouse_genomes_project 19 14405271 14681932 + MGP_C57BL6NJ_P0051743 Gnaq protein_coding protein_coding MGP_C57BL6NJ_T0051744.1 MGP_C57BL6NJ_G0025376.1 mouse_genomes_project 19 14405736 14607842 + Gnaq protein_coding retained_intron MGP_C57BL6NJ_T0051745.1 MGP_C57BL6NJ_G0025376.1 mouse_genomes_project 19 14499315 14608589 + Gnaq protein_coding processed_transcript MGP_C57BL6NJ_T0052215.1 MGP_C57BL6NJ_G0025543.1 mouse_genomes_project 19 42224427 42226555 - MGP_C57BL6NJ_P0052215 Frat2 protein_coding protein_coding MGP_C57BL6NJ_T0013706.1 MGP_C57BL6NJ_G0011751.1 mouse_genomes_project 19 20661788 20662094 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052143.1 MGP_C57BL6NJ_G0025517.1 mouse_genomes_project 19 39660263 39719547 + MGP_C57BL6NJ_P0052143 Cyp2c39 protein_coding protein_coding MGP_C57BL6NJ_T0052285.1 MGP_C57BL6NJ_G0025565.1 mouse_genomes_project 19 43901720 43965417 + MGP_C57BL6NJ_P0052285 Cnnm1 protein_coding protein_coding MGP_C57BL6NJ_T0052286.1 MGP_C57BL6NJ_G0025565.1 mouse_genomes_project 19 43901729 43965372 + MGP_C57BL6NJ_P0052286 Cnnm1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050707.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 24985 34921 + MGP_C57BL6NJ_P0050707 Mrpl21 protein_coding protein_coding MGP_C57BL6NJ_T0050708.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 25139 31263 + Mrpl21 protein_coding retained_intron MGP_C57BL6NJ_T0050709.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 25144 27409 + Mrpl21 protein_coding retained_intron MGP_C57BL6NJ_T0050710.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 25144 33285 + MGP_C57BL6NJ_P0050710 Mrpl21 protein_coding protein_coding MGP_C57BL6NJ_T0050711.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 25148 29823 + MGP_C57BL6NJ_P0050711 Mrpl21 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050712.1 MGP_C57BL6NJ_G0025035.1 mouse_genomes_project 19 28894 33279 + Mrpl21 protein_coding retained_intron MGP_C57BL6NJ_T0051537.1 MGP_C57BL6NJ_G0025270.1 mouse_genomes_project 19 8382424 8399739 - MGP_C57BL6NJ_P0051537 Pga5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051538.1 MGP_C57BL6NJ_G0025270.1 mouse_genomes_project 19 8382428 8393281 - MGP_C57BL6NJ_P0051538 Pga5 protein_coding protein_coding MGP_C57BL6NJ_T0010520.1 MGP_C57BL6NJ_G0008605.1 mouse_genomes_project 19 9778955 9779028 + Mir6994 miRNA miRNA MGP_C57BL6NJ_T0004011.1 MGP_C57BL6NJ_G0003582.1 mouse_genomes_project 19 21221378 21231384 - Gm27151 antisense antisense MGP_C57BL6NJ_T0004012.1 MGP_C57BL6NJ_G0003582.1 mouse_genomes_project 19 21221408 21232107 - Gm27151 antisense antisense MGP_C57BL6NJ_T0051913.1 MGP_C57BL6NJ_G0025435.1 mouse_genomes_project 19 28470672 28534010 + MGP_C57BL6NJ_P0051913 Jak2 protein_coding protein_coding MGP_C57BL6NJ_T0051914.1 MGP_C57BL6NJ_G0025435.1 mouse_genomes_project 19 28470672 28534010 + MGP_C57BL6NJ_P0051914 Jak2 protein_coding protein_coding MGP_C57BL6NJ_T0051804.1 MGP_C57BL6NJ_G0025399.1 mouse_genomes_project 19 20507647 20592522 + MGP_C57BL6NJ_P0051804 Tmem2 protein_coding protein_coding MGP_C57BL6NJ_T0051805.1 MGP_C57BL6NJ_G0025399.1 mouse_genomes_project 19 20507647 20592522 + MGP_C57BL6NJ_P0051805 Tmem2 protein_coding protein_coding MGP_C57BL6NJ_T0052486.1 MGP_C57BL6NJ_G0025630.1 mouse_genomes_project 19 47573665 47615668 + MGP_C57BL6NJ_P0052486 As3mt protein_coding protein_coding MGP_C57BL6NJ_T0051176.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437708 3443621 + MGP_C57BL6NJ_P0051176 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051177.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437708 3443610 + MGP_C57BL6NJ_P0051177 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051178.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437742 3443619 + MGP_C57BL6NJ_P0051178 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051179.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437768 3443619 + MGP_C57BL6NJ_P0051179 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051180.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437768 3443619 + MGP_C57BL6NJ_P0051180 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051181.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437775 3443621 + Men1 protein_coding retained_intron MGP_C57BL6NJ_T0051182.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437776 3443513 + MGP_C57BL6NJ_P0051182 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051183.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437793 3443193 + MGP_C57BL6NJ_P0051183 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051184.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3437840 3443619 + MGP_C57BL6NJ_P0051184 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051185.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3438190 3442902 + MGP_C57BL6NJ_P0051185 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051186.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3439639 3441138 + MGP_C57BL6NJ_P0051186 Men1 protein_coding protein_coding MGP_C57BL6NJ_T0051187.1 MGP_C57BL6NJ_G0025171.1 mouse_genomes_project 19 3442576 3443542 + MGP_C57BL6NJ_P0051187 Men1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0007223.1 MGP_C57BL6NJ_G0005936.1 mouse_genomes_project 19 1047571 1052290 + Gm17552 lincRNA lincRNA MGP_C57BL6NJ_T0051701.1 MGP_C57BL6NJ_G0025341.1 mouse_genomes_project 19 10928735 10929736 + MGP_C57BL6NJ_P0051701 Olfr1445 protein_coding protein_coding MGP_C57BL6NJ_T0051393.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6132928 6147821 + MGP_C57BL6NJ_P0051393 Stx5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051394.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6132977 6147303 + MGP_C57BL6NJ_P0051394 Stx5a protein_coding protein_coding MGP_C57BL6NJ_T0051395.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6132985 6134186 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051396.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133003 6147837 + MGP_C57BL6NJ_P0051396 Stx5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051397.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133004 6147877 + MGP_C57BL6NJ_P0051397 Stx5a protein_coding protein_coding MGP_C57BL6NJ_T0051398.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133027 6136099 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051399.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133184 6134376 + MGP_C57BL6NJ_P0051399 Stx5a protein_coding protein_coding MGP_C57BL6NJ_T0051400.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133322 6141484 + MGP_C57BL6NJ_P0051400 Stx5a protein_coding protein_coding MGP_C57BL6NJ_T0051401.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133403 6147877 + MGP_C57BL6NJ_P0051401 Stx5a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051402.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6133659 6140600 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051403.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6134375 6140831 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051404.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6140214 6147293 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051405.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6140229 6141425 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051406.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6140244 6147219 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051407.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6140301 6141090 + Stx5a protein_coding retained_intron MGP_C57BL6NJ_T0051408.1 MGP_C57BL6NJ_G0025221.1 mouse_genomes_project 19 6141110 6141806 + MGP_C57BL6NJ_P0051408 Stx5a protein_coding protein_coding MGP_C57BL6NJ_T0007232.1 MGP_C57BL6NJ_G0005939.1 mouse_genomes_project 19 3099124 3104931 + Gm10814 lincRNA lincRNA MGP_C57BL6NJ_T0052507.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48448587 48488237 - MGP_C57BL6NJ_P0052507 Obfc1 protein_coding protein_coding MGP_C57BL6NJ_T0052508.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48448592 48456318 - Obfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052509.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48454749 48488154 - MGP_C57BL6NJ_P0052509 Obfc1 protein_coding protein_coding MGP_C57BL6NJ_T0052510.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48469663 48488082 - Obfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052511.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48471604 48488014 - Obfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052512.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48471733 48488212 - Obfc1 protein_coding retained_intron MGP_C57BL6NJ_T0052513.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48472238 48488625 - MGP_C57BL6NJ_P0052513 Obfc1 protein_coding protein_coding MGP_C57BL6NJ_T0052514.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48483472 48487380 - Obfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052515.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48487032 48488164 - Obfc1 protein_coding retained_intron MGP_C57BL6NJ_T0052516.1 MGP_C57BL6NJ_G0025644.1 mouse_genomes_project 19 48487407 48488142 - Obfc1 protein_coding processed_transcript MGP_C57BL6NJ_T0051747.1 MGP_C57BL6NJ_G0025378.1 mouse_genomes_project 19 14932680 15119650 - MGP_C57BL6NJ_P0051747 Vps13a protein_coding protein_coding MGP_C57BL6NJ_T0051748.1 MGP_C57BL6NJ_G0025378.1 mouse_genomes_project 19 14950471 15119597 - MGP_C57BL6NJ_P0051748 Vps13a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0011739.1 MGP_C57BL6NJ_G0009824.1 mouse_genomes_project 19 17262495 17262711 - Gm24190 misc_RNA misc_RNA MGP_C57BL6NJ_T0098850.1 MGP_C57BL6NJ_G0036914.1 mouse_genomes_project 19 11149306 11149819 - pseudogene pseudogene MGP_C57BL6NJ_T0052346.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45132369 45139224 - MGP_C57BL6NJ_P0052346 Ndufb8 protein_coding protein_coding MGP_C57BL6NJ_T0052347.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45134037 45139238 - MGP_C57BL6NJ_P0052347 Ndufb8 protein_coding protein_coding MGP_C57BL6NJ_T0052348.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45134050 45139217 - MGP_C57BL6NJ_P0052348 Ndufb8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052349.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45134052 45136678 - Ndufb8 protein_coding retained_intron MGP_C57BL6NJ_T0052350.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45136419 45138784 - MGP_C57BL6NJ_P0052350 Ndufb8 protein_coding protein_coding MGP_C57BL6NJ_T0052351.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45136637 45139202 - MGP_C57BL6NJ_P0052351 Ndufb8 protein_coding protein_coding MGP_C57BL6NJ_T0052352.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45137072 45139203 - Ndufb8 protein_coding retained_intron MGP_C57BL6NJ_T0052353.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45138498 45139224 - Ndufb8 protein_coding retained_intron MGP_C57BL6NJ_T0052354.1 MGP_C57BL6NJ_G0025588.1 mouse_genomes_project 19 45138512 45139221 - Ndufb8 protein_coding retained_intron MGP_C57BL6NJ_T0050772.1 MGP_C57BL6NJ_G0025046.1 mouse_genomes_project 19 724075 743153 - MGP_C57BL6NJ_P0050772 Aldh3b1 protein_coding protein_coding MGP_C57BL6NJ_T0013686.1 MGP_C57BL6NJ_G0011731.1 mouse_genomes_project 19 1010738 1010998 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050801.1 MGP_C57BL6NJ_G0025056.1 mouse_genomes_project 19 881430 890452 - MGP_C57BL6NJ_P0050801 protein_coding protein_coding MGP_C57BL6NJ_T0004021.1 MGP_C57BL6NJ_G0003588.1 mouse_genomes_project 19 45381649 45392382 - Gm20395 antisense antisense MGP_C57BL6NJ_T0013716.1 MGP_C57BL6NJ_G0011761.1 mouse_genomes_project 19 44661902 44662259 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050782.1 MGP_C57BL6NJ_G0025051.1 mouse_genomes_project 19 820099 826859 + MGP_C57BL6NJ_P0050782 Tbx10 protein_coding protein_coding MGP_C57BL6NJ_T0052155.1 MGP_C57BL6NJ_G0025525.1 mouse_genomes_project 19 40488953 40552104 - MGP_C57BL6NJ_P0052155 Pdlim1 protein_coding protein_coding MGP_C57BL6NJ_T0052156.1 MGP_C57BL6NJ_G0025525.1 mouse_genomes_project 19 40490143 40491860 - Pdlim1 protein_coding retained_intron MGP_C57BL6NJ_T0052157.1 MGP_C57BL6NJ_G0025525.1 mouse_genomes_project 19 40490303 40499309 - Pdlim1 protein_coding retained_intron MGP_C57BL6NJ_T0052158.1 MGP_C57BL6NJ_G0025525.1 mouse_genomes_project 19 40499095 40552330 - MGP_C57BL6NJ_P0052158 Pdlim1 protein_coding protein_coding MGP_C57BL6NJ_T0052159.1 MGP_C57BL6NJ_G0025525.1 mouse_genomes_project 19 40528014 40552104 - Pdlim1 protein_coding retained_intron MGP_C57BL6NJ_T0052144.1 MGP_C57BL6NJ_G0025518.1 mouse_genomes_project 19 39860002 40085820 - MGP_C57BL6NJ_P0052144 protein_coding protein_coding MGP_C57BL6NJ_T0052145.1 MGP_C57BL6NJ_G0025518.1 mouse_genomes_project 19 39860158 40085820 - MGP_C57BL6NJ_P0052145 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051847.1 MGP_C57BL6NJ_G0025421.1 mouse_genomes_project 19 24721493 24728092 + MGP_C57BL6NJ_P0051847 Dmrt2 protein_coding protein_coding MGP_C57BL6NJ_T0102989.1 MGP_C57BL6NJ_G0040783.1 mouse_genomes_project 19 33500031 33504841 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0101458.1 MGP_C57BL6NJ_G0039504.1 mouse_genomes_project 19 57975587 57975715 - Gm22271 snoRNA snoRNA MGP_C57BL6NJ_T0007224.1 MGP_C57BL6NJ_G0005937.1 mouse_genomes_project 19 2860305 2867288 - Malat1 lincRNA lincRNA MGP_C57BL6NJ_T0007225.1 MGP_C57BL6NJ_G0005937.1 mouse_genomes_project 19 2860306 2862080 - Malat1 lincRNA lincRNA MGP_C57BL6NJ_T0007226.1 MGP_C57BL6NJ_G0005937.1 mouse_genomes_project 19 2860309 2861568 - Malat1 lincRNA lincRNA MGP_C57BL6NJ_T0007227.1 MGP_C57BL6NJ_G0005937.1 mouse_genomes_project 19 2866531 2867287 - Malat1 lincRNA lincRNA MGP_C57BL6NJ_T0007228.1 MGP_C57BL6NJ_G0005937.1 mouse_genomes_project 19 2866558 2867256 - Malat1 lincRNA lincRNA MGP_C57BL6NJ_T0052246.1 MGP_C57BL6NJ_G0025552.1 mouse_genomes_project 19 42453125 42464371 - MGP_C57BL6NJ_P0052246 Morn4 protein_coding protein_coding MGP_C57BL6NJ_T0051830.1 MGP_C57BL6NJ_G0025412.1 mouse_genomes_project 19 23422810 23423665 - MGP_C57BL6NJ_P0051830 Fam122a protein_coding protein_coding MGP_C57BL6NJ_T0050777.1 MGP_C57BL6NJ_G0025048.1 mouse_genomes_project 19 781037 797551 + MGP_C57BL6NJ_P0050777 protein_coding protein_coding MGP_C57BL6NJ_T0050778.1 MGP_C57BL6NJ_G0025048.1 mouse_genomes_project 19 781198 797550 + MGP_C57BL6NJ_P0050778 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050779.1 MGP_C57BL6NJ_G0025048.1 mouse_genomes_project 19 787548 794105 + MGP_C57BL6NJ_P0050779 protein_coding protein_coding MGP_C57BL6NJ_T0051995.1 MGP_C57BL6NJ_G0025460.1 mouse_genomes_project 19 32300581 32375501 + MGP_C57BL6NJ_P0051995 Pten protein_coding protein_coding MGP_C57BL6NJ_T0051996.1 MGP_C57BL6NJ_G0025460.1 mouse_genomes_project 19 32300679 32350755 + Pten protein_coding retained_intron MGP_C57BL6NJ_T0051997.1 MGP_C57BL6NJ_G0025460.1 mouse_genomes_project 19 32359136 32365889 + Pten protein_coding retained_intron MGP_C57BL6NJ_T0051721.1 MGP_C57BL6NJ_G0025361.1 mouse_genomes_project 19 11785667 11786618 + MGP_C57BL6NJ_P0051721 Olfr1490 protein_coding protein_coding MGP_C57BL6NJ_T0052626.1 MGP_C57BL6NJ_G0025677.1 mouse_genomes_project 19 58108279 58153863 + MGP_C57BL6NJ_P0052626 Casp7 protein_coding protein_coding MGP_C57BL6NJ_T0052563.1 MGP_C57BL6NJ_G0025658.1 mouse_genomes_project 19 54735641 54803845 + MGP_C57BL6NJ_P0052563 Mxi1 protein_coding protein_coding MGP_C57BL6NJ_T0052564.1 MGP_C57BL6NJ_G0025658.1 mouse_genomes_project 19 54758273 54801333 + MGP_C57BL6NJ_P0052564 Mxi1 protein_coding protein_coding MGP_C57BL6NJ_T0052003.1 MGP_C57BL6NJ_G0025465.1 mouse_genomes_project 19 33676530 33718113 + MGP_C57BL6NJ_P0052003 Lipk protein_coding protein_coding MGP_C57BL6NJ_T0052544.1 MGP_C57BL6NJ_G0025654.1 mouse_genomes_project 19 51334286 51888483 - MGP_C57BL6NJ_P0052544 protein_coding protein_coding MGP_C57BL6NJ_T0052545.1 MGP_C57BL6NJ_G0025654.1 mouse_genomes_project 19 51338645 51888483 - MGP_C57BL6NJ_P0052545 protein_coding protein_coding MGP_C57BL6NJ_T0052546.1 MGP_C57BL6NJ_G0025654.1 mouse_genomes_project 19 51341983 51448076 - MGP_C57BL6NJ_P0052546 protein_coding protein_coding MGP_C57BL6NJ_T0052547.1 MGP_C57BL6NJ_G0025654.1 mouse_genomes_project 19 51343677 51888322 - MGP_C57BL6NJ_P0052547 protein_coding protein_coding MGP_C57BL6NJ_T0099061.1 MGP_C57BL6NJ_G0037125.1 mouse_genomes_project 19 3237353 3237473 + n-R5s19 rRNA rRNA MGP_C57BL6NJ_T0052252.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42551734 42565513 + Zfyve27 protein_coding retained_intron MGP_C57BL6NJ_T0052253.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42558353 42582377 + MGP_C57BL6NJ_P0052253 Zfyve27 protein_coding protein_coding MGP_C57BL6NJ_T0052254.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42558380 42579504 + MGP_C57BL6NJ_P0052254 Zfyve27 protein_coding protein_coding MGP_C57BL6NJ_T0052255.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42558486 42560993 + Zfyve27 protein_coding retained_intron MGP_C57BL6NJ_T0052256.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42566609 42571946 + MGP_C57BL6NJ_P0052256 Zfyve27 protein_coding protein_coding MGP_C57BL6NJ_T0052257.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42571271 42572615 + Zfyve27 protein_coding retained_intron MGP_C57BL6NJ_T0052258.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42573121 42578301 + Zfyve27 protein_coding retained_intron MGP_C57BL6NJ_T0052259.1 MGP_C57BL6NJ_G0025556.1 mouse_genomes_project 19 42573395 42578681 + Zfyve27 protein_coding retained_intron MGP_C57BL6NJ_T0003996.1 MGP_C57BL6NJ_G0003572.1 mouse_genomes_project 19 2783484 2787906 + Gm16538 antisense antisense MGP_C57BL6NJ_T0050840.1 MGP_C57BL6NJ_G0025065.1 mouse_genomes_project 19 1032448 1034594 + MGP_C57BL6NJ_P0050840 Ptprcap protein_coding protein_coding MGP_C57BL6NJ_T0052023.1 MGP_C57BL6NJ_G0025475.1 mouse_genomes_project 19 34309671 34333368 - MGP_C57BL6NJ_P0052023 Ifit1bl1 protein_coding protein_coding MGP_C57BL6NJ_T0052024.1 MGP_C57BL6NJ_G0025475.1 mouse_genomes_project 19 34309674 34334042 - MGP_C57BL6NJ_P0052024 Ifit1bl1 protein_coding protein_coding MGP_C57BL6NJ_T0052147.1 MGP_C57BL6NJ_G0025520.1 mouse_genomes_project 19 40025704 40085741 - MGP_C57BL6NJ_P0052147 protein_coding protein_coding MGP_C57BL6NJ_T0007271.1 MGP_C57BL6NJ_G0005969.1 mouse_genomes_project 19 46039096 46047790 - Gm28578 lincRNA lincRNA MGP_C57BL6NJ_T0007272.1 MGP_C57BL6NJ_G0005969.1 mouse_genomes_project 19 46039116 46039862 - Gm28578 lincRNA lincRNA MGP_C57BL6NJ_T0007273.1 MGP_C57BL6NJ_G0005969.1 mouse_genomes_project 19 46044936 46047776 - Gm28578 lincRNA lincRNA MGP_C57BL6NJ_T0052579.1 MGP_C57BL6NJ_G0025665.1 mouse_genomes_project 19 55410880 55425701 - MGP_C57BL6NJ_P0052579 Bbip1 protein_coding protein_coding MGP_C57BL6NJ_T0052741.1 MGP_C57BL6NJ_G0025715.1 mouse_genomes_project 19 63259612 63259678 + MGP_C57BL6NJ_P0052741 Gm6020 protein_coding protein_coding MGP_C57BL6NJ_T0013715.1 MGP_C57BL6NJ_G0011760.1 mouse_genomes_project 19 43739150 43740050 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050994.1 MGP_C57BL6NJ_G0025121.1 mouse_genomes_project 19 2485435 2489881 + MGP_C57BL6NJ_P0050994 Fibp protein_coding protein_coding MGP_C57BL6NJ_T0050995.1 MGP_C57BL6NJ_G0025121.1 mouse_genomes_project 19 2485522 2489886 + MGP_C57BL6NJ_P0050995 Fibp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051485.1 MGP_C57BL6NJ_G0025243.1 mouse_genomes_project 19 6419756 6523738 + MGP_C57BL6NJ_P0051485 protein_coding protein_coding MGP_C57BL6NJ_T0052292.1 MGP_C57BL6NJ_G0025568.1 mouse_genomes_project 19 44141743 44152773 - MGP_C57BL6NJ_P0052292 Slc25a28 protein_coding protein_coding MGP_C57BL6NJ_T0052241.1 MGP_C57BL6NJ_G0025550.1 mouse_genomes_project 19 42423174 42429855 + Hoga1 protein_coding processed_transcript MGP_C57BL6NJ_T0052242.1 MGP_C57BL6NJ_G0025550.1 mouse_genomes_project 19 42423356 42448552 + MGP_C57BL6NJ_P0052242 Hoga1 protein_coding protein_coding MGP_C57BL6NJ_T0052243.1 MGP_C57BL6NJ_G0025550.1 mouse_genomes_project 19 42423396 42449140 + MGP_C57BL6NJ_P0052243 Hoga1 protein_coding protein_coding MGP_C57BL6NJ_T0052244.1 MGP_C57BL6NJ_G0025550.1 mouse_genomes_project 19 42423415 42437909 + Hoga1 protein_coding retained_intron MGP_C57BL6NJ_T0051879.1 MGP_C57BL6NJ_G0025427.1 mouse_genomes_project 19 26889431 26958468 - Rfx3 protein_coding processed_transcript MGP_C57BL6NJ_T0051880.1 MGP_C57BL6NJ_G0025427.1 mouse_genomes_project 19 26889745 27054513 - MGP_C57BL6NJ_P0051880 Rfx3 protein_coding protein_coding MGP_C57BL6NJ_T0051881.1 MGP_C57BL6NJ_G0025427.1 mouse_genomes_project 19 26889745 27029832 - MGP_C57BL6NJ_P0051881 Rfx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051882.1 MGP_C57BL6NJ_G0025427.1 mouse_genomes_project 19 26926762 27151010 - Rfx3 protein_coding retained_intron MGP_C57BL6NJ_T0051883.1 MGP_C57BL6NJ_G0025427.1 mouse_genomes_project 19 26989219 27149459 - MGP_C57BL6NJ_P0051883 Rfx3 protein_coding protein_coding MGP_C57BL6NJ_T0051149.1 MGP_C57BL6NJ_G0025163.1 mouse_genomes_project 19 3225652 3233868 - Arl2 protein_coding retained_intron MGP_C57BL6NJ_T0051150.1 MGP_C57BL6NJ_G0025163.1 mouse_genomes_project 19 3225661 3234134 - MGP_C57BL6NJ_P0051150 Arl2 protein_coding protein_coding MGP_C57BL6NJ_T0051151.1 MGP_C57BL6NJ_G0025163.1 mouse_genomes_project 19 3228748 3229439 - Arl2 protein_coding retained_intron MGP_C57BL6NJ_T0051170.1 MGP_C57BL6NJ_G0025169.1 mouse_genomes_project 19 3380030 3403397 + MGP_C57BL6NJ_P0051170 Ehd1 protein_coding protein_coding MGP_C57BL6NJ_T0051171.1 MGP_C57BL6NJ_G0025169.1 mouse_genomes_project 19 3380230 3384698 + Ehd1 protein_coding retained_intron MGP_C57BL6NJ_T0051172.1 MGP_C57BL6NJ_G0025169.1 mouse_genomes_project 19 3397481 3401178 + Ehd1 protein_coding retained_intron MGP_C57BL6NJ_T0051173.1 MGP_C57BL6NJ_G0025169.1 mouse_genomes_project 19 3401214 3401661 + Ehd1 protein_coding processed_transcript MGP_C57BL6NJ_T0051806.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 20887094 21789146 + MGP_C57BL6NJ_P0051806 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0051807.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 20887094 21789146 + MGP_C57BL6NJ_P0051807 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0051808.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 20887094 21789146 + MGP_C57BL6NJ_P0051808 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0051809.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 21231524 21789148 + MGP_C57BL6NJ_P0051809 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0051810.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 21481255 21557557 + MGP_C57BL6NJ_P0051810 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0051811.1 MGP_C57BL6NJ_G0025400.1 mouse_genomes_project 19 21481255 21725961 + MGP_C57BL6NJ_P0051811 Trpm3 protein_coding protein_coding MGP_C57BL6NJ_T0011742.1 MGP_C57BL6NJ_G0009827.1 mouse_genomes_project 19 32528877 32529236 - Gm22482 misc_RNA misc_RNA MGP_C57BL6NJ_T0051654.1 MGP_C57BL6NJ_G0025310.1 mouse_genomes_project 19 9704792 9706029 - MGP_C57BL6NJ_P0051654 protein_coding protein_coding MGP_C57BL6NJ_T0051949.1 MGP_C57BL6NJ_G0025446.1 mouse_genomes_project 19 29190847 29228368 + MGP_C57BL6NJ_P0051949 Il33 protein_coding protein_coding MGP_C57BL6NJ_T0051950.1 MGP_C57BL6NJ_G0025446.1 mouse_genomes_project 19 29190848 29217861 + MGP_C57BL6NJ_P0051950 Il33 protein_coding protein_coding MGP_C57BL6NJ_T0051951.1 MGP_C57BL6NJ_G0025446.1 mouse_genomes_project 19 29190865 29226625 + MGP_C57BL6NJ_P0051951 Il33 protein_coding protein_coding MGP_C57BL6NJ_T0051952.1 MGP_C57BL6NJ_G0025446.1 mouse_genomes_project 19 29211573 29228354 + MGP_C57BL6NJ_P0051952 Il33 protein_coding protein_coding MGP_C57BL6NJ_T0051953.1 MGP_C57BL6NJ_G0025446.1 mouse_genomes_project 19 29217599 29218631 + MGP_C57BL6NJ_P0051953 Il33 protein_coding protein_coding MGP_C57BL6NJ_T0010538.1 MGP_C57BL6NJ_G0008623.1 mouse_genomes_project 19 41950441 41950580 + Mir8091 miRNA miRNA MGP_C57BL6NJ_T0052402.1 MGP_C57BL6NJ_G0025606.1 mouse_genomes_project 19 46502663 46504267 - MGP_C57BL6NJ_P0052402 Npm3 protein_coding protein_coding MGP_C57BL6NJ_T0052403.1 MGP_C57BL6NJ_G0025606.1 mouse_genomes_project 19 46503218 46504225 - Npm3 protein_coding retained_intron MGP_C57BL6NJ_T0052543.1 MGP_C57BL6NJ_G0025653.1 mouse_genomes_project 19 51213981 51214593 - MGP_C57BL6NJ_P0052543 Rpl13a-ps1 protein_coding protein_coding MGP_C57BL6NJ_T0004025.1 MGP_C57BL6NJ_G0003592.1 mouse_genomes_project 19 48460523 48464120 + Gm19557 antisense antisense MGP_C57BL6NJ_T0010503.1 MGP_C57BL6NJ_G0008588.1 mouse_genomes_project 19 1563328 1563386 - Mir6986 miRNA miRNA MGP_C57BL6NJ_T0050948.1 MGP_C57BL6NJ_G0025096.1 mouse_genomes_project 19 1936949 1941644 + MGP_C57BL6NJ_P0050948 Mrpl11 protein_coding protein_coding MGP_C57BL6NJ_T0010514.1 MGP_C57BL6NJ_G0008599.1 mouse_genomes_project 19 5253803 5253912 - Gm24951 miRNA miRNA MGP_C57BL6NJ_T0099062.1 MGP_C57BL6NJ_G0037126.1 mouse_genomes_project 19 4471301 4471422 + Gm23997 rRNA rRNA MGP_C57BL6NJ_T0051629.1 MGP_C57BL6NJ_G0025300.1 mouse_genomes_project 19 9428706 9434648 - Ms4a6d protein_coding processed_transcript MGP_C57BL6NJ_T0051630.1 MGP_C57BL6NJ_G0025300.1 mouse_genomes_project 19 9428812 9439951 - MGP_C57BL6NJ_P0051630 Ms4a6d protein_coding protein_coding MGP_C57BL6NJ_T0051631.1 MGP_C57BL6NJ_G0025300.1 mouse_genomes_project 19 9429690 9434742 - Ms4a6d protein_coding retained_intron MGP_C57BL6NJ_T0050928.1 MGP_C57BL6NJ_G0025088.1 mouse_genomes_project 19 1775654 1789605 - MGP_C57BL6NJ_P0050928 Ccs protein_coding protein_coding MGP_C57BL6NJ_T0010521.1 MGP_C57BL6NJ_G0008606.1 mouse_genomes_project 19 11724309 11724418 - Gm22323 miRNA miRNA MGP_C57BL6NJ_T0051662.1 MGP_C57BL6NJ_G0025317.1 mouse_genomes_project 19 9978354 9981806 - MGP_C57BL6NJ_P0051662 protein_coding protein_coding MGP_C57BL6NJ_T0052526.1 MGP_C57BL6NJ_G0025647.1 mouse_genomes_project 19 48690632 48694465 + MGP_C57BL6NJ_P0052526 Sfr1 protein_coding protein_coding MGP_C57BL6NJ_T0052568.1 MGP_C57BL6NJ_G0025662.1 mouse_genomes_project 19 55052899 55107819 + MGP_C57BL6NJ_P0052568 Smc3 protein_coding protein_coding MGP_C57BL6NJ_T0052569.1 MGP_C57BL6NJ_G0025662.1 mouse_genomes_project 19 55093833 55094862 + Smc3 protein_coding retained_intron MGP_C57BL6NJ_T0052570.1 MGP_C57BL6NJ_G0025662.1 mouse_genomes_project 19 55094072 55104912 + MGP_C57BL6NJ_P0052570 Smc3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052571.1 MGP_C57BL6NJ_G0025662.1 mouse_genomes_project 19 55103180 55106794 + Smc3 protein_coding retained_intron MGP_C57BL6NJ_T0007255.1 MGP_C57BL6NJ_G0005956.1 mouse_genomes_project 19 32991765 33014238 - lincRNA lincRNA MGP_C57BL6NJ_T0101445.1 MGP_C57BL6NJ_G0039491.1 mouse_genomes_project 19 18612145 18612277 - Gm22684 snoRNA snoRNA MGP_C57BL6NJ_T0098852.1 MGP_C57BL6NJ_G0036916.1 mouse_genomes_project 19 15119374 15119931 + pseudogene pseudogene MGP_C57BL6NJ_T0051787.1 MGP_C57BL6NJ_G0025394.1 mouse_genomes_project 19 19960653 19974065 + MGP_C57BL6NJ_P0051787 Zfand5 protein_coding protein_coding MGP_C57BL6NJ_T0051788.1 MGP_C57BL6NJ_G0025394.1 mouse_genomes_project 19 19961062 19968809 + MGP_C57BL6NJ_P0051788 Zfand5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051789.1 MGP_C57BL6NJ_G0025394.1 mouse_genomes_project 19 19961621 19965414 + MGP_C57BL6NJ_P0051789 Zfand5 protein_coding protein_coding MGP_C57BL6NJ_T0051790.1 MGP_C57BL6NJ_G0025394.1 mouse_genomes_project 19 19964355 19969040 + Zfand5 protein_coding retained_intron MGP_C57BL6NJ_T0051791.1 MGP_C57BL6NJ_G0025394.1 mouse_genomes_project 19 19964415 19970775 + Zfand5 protein_coding retained_intron MGP_C57BL6NJ_T0007282.1 MGP_C57BL6NJ_G0005975.1 mouse_genomes_project 19 54903861 54905954 + 4833407H14Rik lincRNA lincRNA MGP_C57BL6NJ_T0100149.1 MGP_C57BL6NJ_G0038195.1 mouse_genomes_project 19 10691945 10692052 + Gm24521 snRNA snRNA MGP_C57BL6NJ_T0051967.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 29910858 31189263 - MGP_C57BL6NJ_P0051967 Prkg1 protein_coding protein_coding MGP_C57BL6NJ_T0051968.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 29911854 31091549 - MGP_C57BL6NJ_P0051968 Prkg1 protein_coding protein_coding MGP_C57BL6NJ_T0051969.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 29912268 29920057 - Prkg1 protein_coding processed_transcript MGP_C57BL6NJ_T0051970.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 29912270 29920057 - Prkg1 protein_coding processed_transcript MGP_C57BL6NJ_T0051971.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 29966666 29972787 - Prkg1 protein_coding processed_transcript MGP_C57BL6NJ_T0051972.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 30058104 30137683 - Prkg1 protein_coding retained_intron MGP_C57BL6NJ_T0051974.1 MGP_C57BL6NJ_G0025452.1 mouse_genomes_project 19 31166399 31189203 - MGP_C57BL6NJ_P0051974 Prkg1 protein_coding protein_coding MGP_C57BL6NJ_T0100165.1 MGP_C57BL6NJ_G0038211.1 mouse_genomes_project 19 47955079 47955186 + Gm23140 snRNA snRNA MGP_C57BL6NJ_T0101447.1 MGP_C57BL6NJ_G0039493.1 mouse_genomes_project 19 22506650 22506752 + Gm22144 snoRNA snoRNA MGP_C57BL6NJ_T0051323.1 MGP_C57BL6NJ_G0025201.1 mouse_genomes_project 19 4478685 4481505 + MGP_C57BL6NJ_P0051323 Rcor2 protein_coding protein_coding MGP_C57BL6NJ_T0051324.1 MGP_C57BL6NJ_G0025201.1 mouse_genomes_project 19 4480322 4486592 + MGP_C57BL6NJ_P0051324 Rcor2 protein_coding protein_coding MGP_C57BL6NJ_T0051325.1 MGP_C57BL6NJ_G0025201.1 mouse_genomes_project 19 4482312 4483130 + Rcor2 protein_coding retained_intron MGP_C57BL6NJ_T0052216.1 MGP_C57BL6NJ_G0025544.1 mouse_genomes_project 19 42241117 42274710 - MGP_C57BL6NJ_P0052216 Rrp12 protein_coding protein_coding MGP_C57BL6NJ_T0099255.1 MGP_C57BL6NJ_G0037319.1 mouse_genomes_project 19 9529392 9529468 + Gm25443 scaRNA scaRNA MGP_C57BL6NJ_T0052007.1 MGP_C57BL6NJ_G0025467.1 mouse_genomes_project 19 33782912 33802671 + MGP_C57BL6NJ_P0052007 Lipm protein_coding protein_coding MGP_C57BL6NJ_T0052404.1 MGP_C57BL6NJ_G0025607.1 mouse_genomes_project 19 46505665 46538628 - MGP_C57BL6NJ_P0052404 Mgea5 protein_coding protein_coding MGP_C57BL6NJ_T0051649.1 MGP_C57BL6NJ_G0025308.1 mouse_genomes_project 19 9615490 9666393 - MGP_C57BL6NJ_P0051649 Stx3 protein_coding protein_coding MGP_C57BL6NJ_T0051650.1 MGP_C57BL6NJ_G0025308.1 mouse_genomes_project 19 9615490 9664893 - MGP_C57BL6NJ_P0051650 Stx3 protein_coding protein_coding MGP_C57BL6NJ_T0051651.1 MGP_C57BL6NJ_G0025308.1 mouse_genomes_project 19 9617858 9666393 - MGP_C57BL6NJ_P0051651 Stx3 protein_coding protein_coding MGP_C57BL6NJ_T0051652.1 MGP_C57BL6NJ_G0025308.1 mouse_genomes_project 19 9617858 9664721 - MGP_C57BL6NJ_P0051652 Stx3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007235.1 MGP_C57BL6NJ_G0005942.1 mouse_genomes_project 19 8793124 8814697 - lincRNA lincRNA MGP_C57BL6NJ_T0051454.1 MGP_C57BL6NJ_G0025232.1 mouse_genomes_project 19 6300693 6301611 - MGP_C57BL6NJ_P0051454 Uqcc3 protein_coding protein_coding MGP_C57BL6NJ_T0051492.1 MGP_C57BL6NJ_G0025249.1 mouse_genomes_project 19 7609290 7611680 + MGP_C57BL6NJ_P0051492 Fth1 protein_coding protein_coding MGP_C57BL6NJ_T0052517.1 MGP_C57BL6NJ_G0025645.1 mouse_genomes_project 19 48533462 48595954 + MGP_C57BL6NJ_P0052517 Slk protein_coding protein_coding MGP_C57BL6NJ_T0052518.1 MGP_C57BL6NJ_G0025645.1 mouse_genomes_project 19 48533803 48593128 + MGP_C57BL6NJ_P0052518 Slk protein_coding protein_coding MGP_C57BL6NJ_T0052519.1 MGP_C57BL6NJ_G0025645.1 mouse_genomes_project 19 48572034 48576719 + Slk protein_coding retained_intron MGP_C57BL6NJ_T0052520.1 MGP_C57BL6NJ_G0025645.1 mouse_genomes_project 19 48574022 48577219 + Slk protein_coding retained_intron MGP_C57BL6NJ_T0052521.1 MGP_C57BL6NJ_G0025645.1 mouse_genomes_project 19 48585802 48587127 + Slk protein_coding retained_intron MGP_C57BL6NJ_T0052459.1 MGP_C57BL6NJ_G0025619.1 mouse_genomes_project 19 47160935 47163198 + MGP_C57BL6NJ_P0052459 Fbxl15 protein_coding protein_coding MGP_C57BL6NJ_T0052460.1 MGP_C57BL6NJ_G0025619.1 mouse_genomes_project 19 47160938 47163197 + MGP_C57BL6NJ_P0052460 Fbxl15 protein_coding protein_coding MGP_C57BL6NJ_T0051706.1 MGP_C57BL6NJ_G0025346.1 mouse_genomes_project 19 11007647 11008625 + MGP_C57BL6NJ_P0051706 Olfr1450 protein_coding protein_coding MGP_C57BL6NJ_T0051026.1 MGP_C57BL6NJ_G0025129.1 mouse_genomes_project 19 2597149 2600337 + MGP_C57BL6NJ_P0051026 Ap5b1 protein_coding protein_coding MGP_C57BL6NJ_T0018178.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36528984 36625879 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018179.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36535330 36608232 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018180.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36535342 36541994 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018181.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36535347 36541974 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018182.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36561162 36576188 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018183.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36563299 36608026 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018184.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36576031 36608085 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018185.1 MGP_C57BL6NJ_G0015780.1 mouse_genomes_project 19 36576200 36608081 - 1500017E21Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0051674.1 MGP_C57BL6NJ_G0025329.1 mouse_genomes_project 19 10464109 10468615 + MGP_C57BL6NJ_P0051674 Mpeg1 protein_coding protein_coding MGP_C57BL6NJ_T0051727.1 MGP_C57BL6NJ_G0025367.1 mouse_genomes_project 19 11923888 11924940 - MGP_C57BL6NJ_P0051727 Olfr1499 protein_coding protein_coding MGP_C57BL6NJ_T0051816.1 MGP_C57BL6NJ_G0025404.1 mouse_genomes_project 19 22414499 22519405 - MGP_C57BL6NJ_P0051816 1700028P14Rik protein_coding protein_coding MGP_C57BL6NJ_T0051731.1 MGP_C57BL6NJ_G0025371.1 mouse_genomes_project 19 12008620 12009705 - MGP_C57BL6NJ_P0051731 Olfr1504 protein_coding protein_coding MGP_C57BL6NJ_T0010506.1 MGP_C57BL6NJ_G0008591.1 mouse_genomes_project 19 3137867 3137926 + Mir6988 miRNA miRNA MGP_C57BL6NJ_T0052056.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36773661 36837064 + MGP_C57BL6NJ_P0052056 Tnks2 protein_coding protein_coding MGP_C57BL6NJ_T0052057.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36773833 36796292 + Tnks2 protein_coding processed_transcript MGP_C57BL6NJ_T0052058.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36789702 36795367 + Tnks2 protein_coding retained_intron MGP_C57BL6NJ_T0052059.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36797852 36802675 + Tnks2 protein_coding retained_intron MGP_C57BL6NJ_T0052060.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36798235 36814847 + MGP_C57BL6NJ_P0052060 Tnks2 protein_coding protein_coding MGP_C57BL6NJ_T0052061.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36799448 36806599 + MGP_C57BL6NJ_P0052061 Tnks2 protein_coding protein_coding MGP_C57BL6NJ_T0052062.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36814134 36826450 + MGP_C57BL6NJ_P0052062 Tnks2 protein_coding protein_coding MGP_C57BL6NJ_T0052063.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36820873 36825448 + Tnks2 protein_coding retained_intron MGP_C57BL6NJ_T0052064.1 MGP_C57BL6NJ_G0025489.1 mouse_genomes_project 19 36822939 36831015 + Tnks2 protein_coding retained_intron MGP_C57BL6NJ_T0052211.1 MGP_C57BL6NJ_G0025542.1 mouse_genomes_project 19 42140606 42177024 - MGP_C57BL6NJ_P0052211 Arhgap19 protein_coding protein_coding MGP_C57BL6NJ_T0052212.1 MGP_C57BL6NJ_G0025542.1 mouse_genomes_project 19 42140609 42177061 - MGP_C57BL6NJ_P0052212 Arhgap19 protein_coding protein_coding MGP_C57BL6NJ_T0052213.1 MGP_C57BL6NJ_G0025542.1 mouse_genomes_project 19 42143818 42155355 - MGP_C57BL6NJ_P0052213 Arhgap19 protein_coding protein_coding MGP_C57BL6NJ_T0052214.1 MGP_C57BL6NJ_G0025542.1 mouse_genomes_project 19 42144012 42177024 - MGP_C57BL6NJ_P0052214 Arhgap19 protein_coding protein_coding MGP_C57BL6NJ_T0018144.1 MGP_C57BL6NJ_G0015771.1 mouse_genomes_project 19 3781899 3849113 - 2410152P15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0050759.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693252 712797 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0050760.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693252 715813 - MGP_C57BL6NJ_P0050760 Tcirg1 protein_coding protein_coding MGP_C57BL6NJ_T0050761.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693252 717716 - MGP_C57BL6NJ_P0050761 Tcirg1 protein_coding protein_coding MGP_C57BL6NJ_T0050762.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693252 717574 - MGP_C57BL6NJ_P0050762 Tcirg1 protein_coding protein_coding MGP_C57BL6NJ_T0050763.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693252 717695 - MGP_C57BL6NJ_P0050763 Tcirg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050764.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693472 711748 - MGP_C57BL6NJ_P0050764 Tcirg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050765.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 693602 694433 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0050766.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 694273 695034 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0050767.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 696829 713080 - MGP_C57BL6NJ_P0050767 Tcirg1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050768.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 711967 712971 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0050769.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 712218 717623 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0050770.1 MGP_C57BL6NJ_G0025044.1 mouse_genomes_project 19 712418 714146 - Tcirg1 protein_coding retained_intron MGP_C57BL6NJ_T0052649.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58673506 58773689 - MGP_C57BL6NJ_P0052649 Afap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0052650.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58673506 58773659 - MGP_C57BL6NJ_P0052650 Afap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0052651.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58673506 58773671 - MGP_C57BL6NJ_P0052651 Afap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0052652.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58681543 58691240 - Afap1l2 protein_coding retained_intron MGP_C57BL6NJ_T0052653.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58684679 58773689 - MGP_C57BL6NJ_P0052653 Afap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0052654.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58692730 58766513 - MGP_C57BL6NJ_P0052654 Afap1l2 protein_coding protein_coding MGP_C57BL6NJ_T0052655.1 MGP_C57BL6NJ_G0025685.1 mouse_genomes_project 19 58706212 58773669 - Afap1l2 protein_coding retained_intron MGP_C57BL6NJ_T0010533.1 MGP_C57BL6NJ_G0008618.1 mouse_genomes_project 19 34596410 34596497 - Mir107 miRNA miRNA MGP_C57BL6NJ_T0052370.1 MGP_C57BL6NJ_G0025596.1 mouse_genomes_project 19 45659730 45662840 - Pdzd7 protein_coding processed_transcript MGP_C57BL6NJ_T0052371.1 MGP_C57BL6NJ_G0025596.1 mouse_genomes_project 19 45659731 45680905 - MGP_C57BL6NJ_P0052371 Pdzd7 protein_coding protein_coding MGP_C57BL6NJ_T0052372.1 MGP_C57BL6NJ_G0025596.1 mouse_genomes_project 19 45659731 45680063 - MGP_C57BL6NJ_P0052372 Pdzd7 protein_coding protein_coding MGP_C57BL6NJ_T0052097.1 MGP_C57BL6NJ_G0025501.1 mouse_genomes_project 19 38134915 38155093 + MGP_C57BL6NJ_P0052097 Cep55 protein_coding protein_coding MGP_C57BL6NJ_T0052098.1 MGP_C57BL6NJ_G0025501.1 mouse_genomes_project 19 38134930 38154166 + MGP_C57BL6NJ_P0052098 Cep55 protein_coding protein_coding MGP_C57BL6NJ_T0052099.1 MGP_C57BL6NJ_G0025501.1 mouse_genomes_project 19 38134932 38155093 + MGP_C57BL6NJ_P0052099 Cep55 protein_coding protein_coding MGP_C57BL6NJ_T0050723.1 MGP_C57BL6NJ_G0025040.1 mouse_genomes_project 19 339329 458609 - MGP_C57BL6NJ_P0050723 Lrp5 protein_coding protein_coding MGP_C57BL6NJ_T0050724.1 MGP_C57BL6NJ_G0025040.1 mouse_genomes_project 19 339332 458614 - MGP_C57BL6NJ_P0050724 Lrp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050725.1 MGP_C57BL6NJ_G0025040.1 mouse_genomes_project 19 339337 376338 - MGP_C57BL6NJ_P0050725 Lrp5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050726.1 MGP_C57BL6NJ_G0025040.1 mouse_genomes_project 19 382208 458617 - MGP_C57BL6NJ_P0050726 Lrp5 protein_coding protein_coding MGP_C57BL6NJ_T0100156.1 MGP_C57BL6NJ_G0038202.1 mouse_genomes_project 19 25280080 25280205 - Gm25176 snRNA snRNA MGP_C57BL6NJ_T0051869.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311095 26344256 + Vldlr protein_coding retained_intron MGP_C57BL6NJ_T0051870.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311631 26344363 + MGP_C57BL6NJ_P0051870 Vldlr protein_coding protein_coding MGP_C57BL6NJ_T0051871.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311631 26329468 + MGP_C57BL6NJ_P0051871 Vldlr protein_coding protein_coding MGP_C57BL6NJ_T0051872.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311968 26326382 + Vldlr protein_coding processed_transcript MGP_C57BL6NJ_T0051873.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311968 26348732 + MGP_C57BL6NJ_P0051873 Vldlr protein_coding protein_coding MGP_C57BL6NJ_T0051874.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26311968 26344228 + MGP_C57BL6NJ_P0051874 Vldlr protein_coding protein_coding MGP_C57BL6NJ_T0051875.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26312069 26344264 + MGP_C57BL6NJ_P0051875 Vldlr protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051876.1 MGP_C57BL6NJ_G0025424.1 mouse_genomes_project 19 26333385 26338329 + MGP_C57BL6NJ_P0051876 Vldlr protein_coding protein_coding MGP_C57BL6NJ_T0051301.1 MGP_C57BL6NJ_G0025189.1 mouse_genomes_project 19 4166635 4169371 - MGP_C57BL6NJ_P0051301 Fkbp2 protein_coding protein_coding MGP_C57BL6NJ_T0051302.1 MGP_C57BL6NJ_G0025189.1 mouse_genomes_project 19 4166635 4169350 - MGP_C57BL6NJ_P0051302 Fkbp2 protein_coding protein_coding MGP_C57BL6NJ_T0052092.1 MGP_C57BL6NJ_G0025498.1 mouse_genomes_project 19 37748416 37756229 + MGP_C57BL6NJ_P0052092 Cyp26c1 protein_coding protein_coding MGP_C57BL6NJ_T0052079.1 MGP_C57BL6NJ_G0025493.1 mouse_genomes_project 19 37204130 37220349 + MGP_C57BL6NJ_P0052079 March5 protein_coding protein_coding MGP_C57BL6NJ_T0052080.1 MGP_C57BL6NJ_G0025493.1 mouse_genomes_project 19 37204155 37219165 + MGP_C57BL6NJ_P0052080 March5 protein_coding protein_coding MGP_C57BL6NJ_T0052081.1 MGP_C57BL6NJ_G0025493.1 mouse_genomes_project 19 37204163 37215730 + March5 protein_coding retained_intron MGP_C57BL6NJ_T0052082.1 MGP_C57BL6NJ_G0025493.1 mouse_genomes_project 19 37215164 37220187 + MGP_C57BL6NJ_P0052082 March5 protein_coding protein_coding MGP_C57BL6NJ_T0052376.1 MGP_C57BL6NJ_G0025598.1 mouse_genomes_project 19 45716795 45720839 + MGP_C57BL6NJ_P0052376 Kazald1 protein_coding protein_coding MGP_C57BL6NJ_T0052377.1 MGP_C57BL6NJ_G0025598.1 mouse_genomes_project 19 45717693 45720839 + MGP_C57BL6NJ_P0052377 Kazald1 protein_coding protein_coding MGP_C57BL6NJ_T0052188.1 MGP_C57BL6NJ_G0025530.1 mouse_genomes_project 19 41152521 41169571 + MGP_C57BL6NJ_P0052188 Ccnj protein_coding protein_coding MGP_C57BL6NJ_T0052189.1 MGP_C57BL6NJ_G0025530.1 mouse_genomes_project 19 41152521 41169571 + MGP_C57BL6NJ_P0052189 Ccnj protein_coding protein_coding MGP_C57BL6NJ_T0052190.1 MGP_C57BL6NJ_G0025530.1 mouse_genomes_project 19 41152550 41169008 + MGP_C57BL6NJ_P0052190 Ccnj protein_coding protein_coding MGP_C57BL6NJ_T0013695.1 MGP_C57BL6NJ_G0011740.1 mouse_genomes_project 19 9226138 9229639 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007288.1 MGP_C57BL6NJ_G0005981.1 mouse_genomes_project 19 61896033 61900855 - Gm17203 lincRNA lincRNA MGP_C57BL6NJ_T0052151.1 MGP_C57BL6NJ_G0025524.1 mouse_genomes_project 19 40413156 40452095 - MGP_C57BL6NJ_P0052151 Cyp2c70 protein_coding protein_coding MGP_C57BL6NJ_T0052152.1 MGP_C57BL6NJ_G0025524.1 mouse_genomes_project 19 40427690 40452095 - MGP_C57BL6NJ_P0052152 Cyp2c70 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052153.1 MGP_C57BL6NJ_G0025524.1 mouse_genomes_project 19 40428765 40452095 - MGP_C57BL6NJ_P0052153 Cyp2c70 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052154.1 MGP_C57BL6NJ_G0025524.1 mouse_genomes_project 19 40442628 40452142 - Cyp2c70 protein_coding retained_intron MGP_C57BL6NJ_T0050907.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1698197 1707989 + Rbm4b protein_coding retained_intron MGP_C57BL6NJ_T0050908.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1698218 1705814 + Rbm4b protein_coding processed_transcript MGP_C57BL6NJ_T0050909.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1698219 1706455 + Rbm4b protein_coding retained_intron MGP_C57BL6NJ_T0050910.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1698225 1711053 + MGP_C57BL6NJ_P0050910 Rbm4b protein_coding protein_coding MGP_C57BL6NJ_T0050911.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1698235 1709243 + MGP_C57BL6NJ_P0050911 Rbm4b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050912.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1706508 1712178 + Rbm4b protein_coding retained_intron MGP_C57BL6NJ_T0050913.1 MGP_C57BL6NJ_G0025085.1 mouse_genomes_project 19 1709577 1710756 + Rbm4b protein_coding processed_transcript MGP_C57BL6NJ_T0100166.1 MGP_C57BL6NJ_G0038212.1 mouse_genomes_project 19 48671882 48671986 - Gm24805 snRNA snRNA MGP_C57BL6NJ_T0051755.1 MGP_C57BL6NJ_G0025382.1 mouse_genomes_project 19 15779916 15787929 + MGP_C57BL6NJ_P0051755 Rfk protein_coding protein_coding MGP_C57BL6NJ_T0051756.1 MGP_C57BL6NJ_G0025382.1 mouse_genomes_project 19 15780441 15786438 + Rfk protein_coding processed_transcript MGP_C57BL6NJ_T0051757.1 MGP_C57BL6NJ_G0025382.1 mouse_genomes_project 19 15783310 15786541 + Rfk protein_coding processed_transcript MGP_C57BL6NJ_T0052206.1 MGP_C57BL6NJ_G0025541.1 mouse_genomes_project 19 41963132 42116724 - MGP_C57BL6NJ_P0052206 Slit1 protein_coding protein_coding MGP_C57BL6NJ_T0052207.1 MGP_C57BL6NJ_G0025541.1 mouse_genomes_project 19 41963134 42116897 - MGP_C57BL6NJ_P0052207 Slit1 protein_coding protein_coding MGP_C57BL6NJ_T0052208.1 MGP_C57BL6NJ_G0025541.1 mouse_genomes_project 19 41963326 42116724 - MGP_C57BL6NJ_P0052208 Slit1 protein_coding protein_coding MGP_C57BL6NJ_T0052209.1 MGP_C57BL6NJ_G0025541.1 mouse_genomes_project 19 41967161 41971196 - Slit1 protein_coding retained_intron MGP_C57BL6NJ_T0052210.1 MGP_C57BL6NJ_G0025541.1 mouse_genomes_project 19 42012365 42116718 - MGP_C57BL6NJ_P0052210 Slit1 protein_coding protein_coding MGP_C57BL6NJ_T0051461.1 MGP_C57BL6NJ_G0025235.1 mouse_genomes_project 19 6309603 6315742 + MGP_C57BL6NJ_P0051461 protein_coding protein_coding MGP_C57BL6NJ_T0051465.1 MGP_C57BL6NJ_G0025235.1 mouse_genomes_project 19 6311203 6315905 + protein_coding processed_transcript MGP_C57BL6NJ_T0050860.1 MGP_C57BL6NJ_G0025073.1 mouse_genomes_project 19 1156677 1164182 - MGP_C57BL6NJ_P0050860 Ssh3 protein_coding protein_coding MGP_C57BL6NJ_T0050861.1 MGP_C57BL6NJ_G0025073.1 mouse_genomes_project 19 1156682 1164182 - MGP_C57BL6NJ_P0050861 Ssh3 protein_coding protein_coding MGP_C57BL6NJ_T0052417.1 MGP_C57BL6NJ_G0025611.1 mouse_genomes_project 19 46827734 46841077 - MGP_C57BL6NJ_P0052417 Ldb1 protein_coding protein_coding MGP_C57BL6NJ_T0052418.1 MGP_C57BL6NJ_G0025611.1 mouse_genomes_project 19 46829984 46831118 - Ldb1 protein_coding retained_intron MGP_C57BL6NJ_T0052419.1 MGP_C57BL6NJ_G0025611.1 mouse_genomes_project 19 46830290 46832240 - Ldb1 protein_coding retained_intron MGP_C57BL6NJ_T0051440.1 MGP_C57BL6NJ_G0025228.1 mouse_genomes_project 19 6248929 6251247 - MGP_C57BL6NJ_P0051440 Gng3 protein_coding protein_coding MGP_C57BL6NJ_T0052595.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409129 57608816 + MGP_C57BL6NJ_P0052595 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052596.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409129 57608816 + MGP_C57BL6NJ_P0052596 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052597.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409139 57608414 + MGP_C57BL6NJ_P0052597 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052598.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409139 57608391 + MGP_C57BL6NJ_P0052598 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052599.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409203 57600401 + MGP_C57BL6NJ_P0052599 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052600.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409203 57607877 + MGP_C57BL6NJ_P0052600 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052601.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409377 57607371 + MGP_C57BL6NJ_P0052601 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052602.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409571 57584891 + Tcf7l2 protein_coding retained_intron MGP_C57BL6NJ_T0052603.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409571 57608393 + MGP_C57BL6NJ_P0052603 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052604.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409571 57608816 + MGP_C57BL6NJ_P0052604 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052605.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409571 57600398 + MGP_C57BL6NJ_P0052605 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052606.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409571 57607371 + MGP_C57BL6NJ_P0052606 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052607.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57409940 57585023 + Tcf7l2 protein_coding retained_intron MGP_C57BL6NJ_T0052608.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57567714 57594780 + Tcf7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0052609.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57568896 57594128 + MGP_C57BL6NJ_P0052609 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052610.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57569872 57608391 + MGP_C57BL6NJ_P0052610 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0052611.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57570024 57586979 + Tcf7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0052612.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57572671 57594203 + Tcf7l2 protein_coding processed_transcript MGP_C57BL6NJ_T0052613.1 MGP_C57BL6NJ_G0025674.1 mouse_genomes_project 19 57572915 57594766 + MGP_C57BL6NJ_P0052613 Tcf7l2 protein_coding protein_coding MGP_C57BL6NJ_T0051726.1 MGP_C57BL6NJ_G0025366.1 mouse_genomes_project 19 11901877 11902822 - MGP_C57BL6NJ_P0051726 Olfr1497 protein_coding protein_coding MGP_C57BL6NJ_T0051188.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443864 3458341 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051189.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443884 3445384 + MGP_C57BL6NJ_P0051189 Map4k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051190.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443889 3458344 + MGP_C57BL6NJ_P0051190 Map4k2 protein_coding protein_coding MGP_C57BL6NJ_T0051191.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443920 3444724 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0051192.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443937 3458030 + MGP_C57BL6NJ_P0051192 Map4k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051193.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443945 3445602 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051194.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443953 3448470 + MGP_C57BL6NJ_P0051194 Map4k2 protein_coding protein_coding MGP_C57BL6NJ_T0051195.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443979 3456256 + MGP_C57BL6NJ_P0051195 Map4k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051196.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3443999 3446251 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051197.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3444147 3446586 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0051198.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3444178 3446249 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0051199.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3444200 3446249 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051200.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3444506 3454615 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051201.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3445264 3445573 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051202.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3446243 3447375 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051203.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3448077 3449021 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051204.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3449276 3456569 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051205.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3449396 3454387 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0051206.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3449419 3456567 + MGP_C57BL6NJ_P0051206 Map4k2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051207.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3453636 3454308 + Map4k2 protein_coding retained_intron MGP_C57BL6NJ_T0051208.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3455348 3458171 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0051209.1 MGP_C57BL6NJ_G0025172.1 mouse_genomes_project 19 3455503 3456362 + Map4k2 protein_coding processed_transcript MGP_C57BL6NJ_T0010550.1 MGP_C57BL6NJ_G0008635.1 mouse_genomes_project 19 56823928 56823985 + Mir6715 miRNA miRNA MGP_C57BL6NJ_T0007266.1 MGP_C57BL6NJ_G0005965.1 mouse_genomes_project 19 45285849 45288758 - Gm26644 lincRNA lincRNA MGP_C57BL6NJ_T0051033.1 MGP_C57BL6NJ_G0025132.1 mouse_genomes_project 19 2688915 2699563 + MGP_C57BL6NJ_P0051033 Rela protein_coding protein_coding MGP_C57BL6NJ_T0007274.1 MGP_C57BL6NJ_G0005970.1 mouse_genomes_project 19 46789251 46806850 + 4930505N22Rik lincRNA lincRNA MGP_C57BL6NJ_T0052260.1 MGP_C57BL6NJ_G0025557.1 mouse_genomes_project 19 42585757 42590050 - MGP_C57BL6NJ_P0052260 Sfrp5 protein_coding protein_coding MGP_C57BL6NJ_T0051730.1 MGP_C57BL6NJ_G0025370.1 mouse_genomes_project 19 11981367 11982318 + MGP_C57BL6NJ_P0051730 Olfr1502 protein_coding protein_coding MGP_C57BL6NJ_T0052719.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62871632 62894601 + MGP_C57BL6NJ_P0052719 Fam45a protein_coding protein_coding MGP_C57BL6NJ_T0052720.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62871638 62899792 + MGP_C57BL6NJ_P0052720 Fam45a protein_coding protein_coding MGP_C57BL6NJ_T0052721.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62871643 62880221 + Fam45a protein_coding retained_intron MGP_C57BL6NJ_T0052722.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62871658 62884188 + MGP_C57BL6NJ_P0052722 Fam45a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052723.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62871658 62899792 + MGP_C57BL6NJ_P0052723 Fam45a protein_coding protein_coding MGP_C57BL6NJ_T0052724.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62873274 62876543 + Fam45a protein_coding processed_transcript MGP_C57BL6NJ_T0052725.1 MGP_C57BL6NJ_G0025710.1 mouse_genomes_project 19 62894288 62898678 + Fam45a protein_coding retained_intron MGP_C57BL6NJ_T0051715.1 MGP_C57BL6NJ_G0025355.1 mouse_genomes_project 19 11418105 11419038 + MGP_C57BL6NJ_P0051715 Olfr1466 protein_coding protein_coding MGP_C57BL6NJ_T0052173.1 MGP_C57BL6NJ_G0025528.1 mouse_genomes_project 19 40895154 40910781 - MGP_C57BL6NJ_P0052173 Tctn3 protein_coding protein_coding MGP_C57BL6NJ_T0052174.1 MGP_C57BL6NJ_G0025528.1 mouse_genomes_project 19 40903645 40910751 - MGP_C57BL6NJ_P0052174 Tctn3 protein_coding protein_coding MGP_C57BL6NJ_T0052175.1 MGP_C57BL6NJ_G0025528.1 mouse_genomes_project 19 40905672 40910748 - MGP_C57BL6NJ_P0052175 Tctn3 protein_coding protein_coding MGP_C57BL6NJ_T0052176.1 MGP_C57BL6NJ_G0025528.1 mouse_genomes_project 19 40909672 40910736 - Tctn3 protein_coding retained_intron MGP_C57BL6NJ_T0051581.1 MGP_C57BL6NJ_G0025284.1 mouse_genomes_project 19 8841367 8854844 - MGP_C57BL6NJ_P0051581 Ms4a8a protein_coding protein_coding MGP_C57BL6NJ_T0051582.1 MGP_C57BL6NJ_G0025284.1 mouse_genomes_project 19 8849312 8854844 - Ms4a8a protein_coding retained_intron MGP_C57BL6NJ_T0051088.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133109 3140246 + MGP_C57BL6NJ_P0051088 Syvn1 protein_coding protein_coding MGP_C57BL6NJ_T0051089.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133171 3135737 + MGP_C57BL6NJ_P0051089 Syvn1 protein_coding protein_coding MGP_C57BL6NJ_T0051090.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133195 3140243 + MGP_C57BL6NJ_P0051090 Syvn1 protein_coding protein_coding MGP_C57BL6NJ_T0051091.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133598 3140245 + Syvn1 protein_coding retained_intron MGP_C57BL6NJ_T0051092.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133613 3140243 + MGP_C57BL6NJ_P0051092 Syvn1 protein_coding protein_coding MGP_C57BL6NJ_T0051093.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133618 3136185 + Syvn1 protein_coding retained_intron MGP_C57BL6NJ_T0051094.1 MGP_C57BL6NJ_G0025150.1 mouse_genomes_project 19 3133637 3140243 + MGP_C57BL6NJ_P0051094 Syvn1 protein_coding protein_coding MGP_C57BL6NJ_T0007249.1 MGP_C57BL6NJ_G0005953.1 mouse_genomes_project 19 27845828 27893161 + D930032P07Rik lincRNA lincRNA MGP_C57BL6NJ_T0007250.1 MGP_C57BL6NJ_G0005953.1 mouse_genomes_project 19 27845832 27892886 + D930032P07Rik lincRNA lincRNA MGP_C57BL6NJ_T0102213.1 MGP_C57BL6NJ_G0040218.1 mouse_genomes_project 19 10887033 10887776 + transcribed_processed_pseudogene processed_transcript MGP_C57BL6NJ_T0102214.1 MGP_C57BL6NJ_G0040218.1 mouse_genomes_project 19 10887217 10887556 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_C57BL6NJ_T0051704.1 MGP_C57BL6NJ_G0025344.1 mouse_genomes_project 19 10967955 10968900 - MGP_C57BL6NJ_P0051704 Olfr1448 protein_coding protein_coding MGP_C57BL6NJ_T0051749.1 MGP_C57BL6NJ_G0025379.1 mouse_genomes_project 19 15220950 15222465 - MGP_C57BL6NJ_P0051749 Foxb2 protein_coding protein_coding MGP_C57BL6NJ_T0050783.1 MGP_C57BL6NJ_G0025052.1 mouse_genomes_project 19 827927 829451 + MGP_C57BL6NJ_P0050783 Nudt8 protein_coding protein_coding MGP_C57BL6NJ_T0050784.1 MGP_C57BL6NJ_G0025052.1 mouse_genomes_project 19 827973 833184 + MGP_C57BL6NJ_P0050784 Nudt8 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050785.1 MGP_C57BL6NJ_G0025052.1 mouse_genomes_project 19 827978 829449 + MGP_C57BL6NJ_P0050785 Nudt8 protein_coding protein_coding MGP_C57BL6NJ_T0099064.1 MGP_C57BL6NJ_G0037128.1 mouse_genomes_project 19 37173828 37173934 + Gm23918 rRNA rRNA MGP_C57BL6NJ_T0052630.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58258655 58277622 - MGP_C57BL6NJ_P0052630 Dclre1a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052631.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58258657 58276641 - Dclre1a protein_coding retained_intron MGP_C57BL6NJ_T0052632.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58258657 58277697 - MGP_C57BL6NJ_P0052632 Dclre1a protein_coding protein_coding MGP_C57BL6NJ_T0052633.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58259070 58266868 - Dclre1a protein_coding retained_intron MGP_C57BL6NJ_T0052634.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58269496 58271031 - Dclre1a protein_coding processed_transcript MGP_C57BL6NJ_T0052635.1 MGP_C57BL6NJ_G0025679.1 mouse_genomes_project 19 58276343 58277512 - MGP_C57BL6NJ_P0052635 Dclre1a protein_coding protein_coding MGP_C57BL6NJ_T0051642.1 MGP_C57BL6NJ_G0025304.1 mouse_genomes_project 19 9506815 9525246 - MGP_C57BL6NJ_P0051642 Oosp1 protein_coding protein_coding MGP_C57BL6NJ_T0051643.1 MGP_C57BL6NJ_G0025304.1 mouse_genomes_project 19 9506890 9525124 - MGP_C57BL6NJ_P0051643 Oosp1 protein_coding protein_coding MGP_C57BL6NJ_T0051644.1 MGP_C57BL6NJ_G0025304.1 mouse_genomes_project 19 9507028 9525130 - MGP_C57BL6NJ_P0051644 Oosp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0003989.1 MGP_C57BL6NJ_G0003569.1 mouse_genomes_project 19 828105 828580 - Gm16312 antisense antisense MGP_C57BL6NJ_T0051287.1 MGP_C57BL6NJ_G0025184.1 mouse_genomes_project 19 4107134 4118914 - MGP_C57BL6NJ_P0051287 Kcnk4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050974.1 MGP_C57BL6NJ_G0025109.1 mouse_genomes_project 19 2279326 2306384 - MGP_C57BL6NJ_P0050974 Sf3b2 protein_coding protein_coding MGP_C57BL6NJ_T0052360.1 MGP_C57BL6NJ_G0025591.1 mouse_genomes_project 19 45551474 45609334 + MGP_C57BL6NJ_P0052360 Fam178a protein_coding protein_coding MGP_C57BL6NJ_T0051321.1 MGP_C57BL6NJ_G0025199.1 mouse_genomes_project 19 4419489 4421980 - MGP_C57BL6NJ_P0051321 Cox8a protein_coding protein_coding MGP_C57BL6NJ_T0100147.1 MGP_C57BL6NJ_G0038193.1 mouse_genomes_project 19 1868582 1868692 + Gm25334 snRNA snRNA MGP_C57BL6NJ_T0051943.1 MGP_C57BL6NJ_G0025443.1 mouse_genomes_project 19 28938329 28950634 + MGP_C57BL6NJ_P0051943 Mlana protein_coding protein_coding MGP_C57BL6NJ_T0051702.1 MGP_C57BL6NJ_G0025342.1 mouse_genomes_project 19 10934469 10935513 - MGP_C57BL6NJ_P0051702 Olfr1446 protein_coding protein_coding MGP_C57BL6NJ_T0010537.1 MGP_C57BL6NJ_G0008622.1 mouse_genomes_project 19 41221425 41221512 + Mir8092 miRNA miRNA MGP_C57BL6NJ_T0051647.1 MGP_C57BL6NJ_G0025306.1 mouse_genomes_project 19 9586523 9602819 + MGP_C57BL6NJ_P0051647 Gif protein_coding protein_coding MGP_C57BL6NJ_T0051152.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3233710 3272528 + Batf2 protein_coding processed_transcript MGP_C57BL6NJ_T0051153.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3264493 3272531 + MGP_C57BL6NJ_P0051153 Batf2 protein_coding protein_coding MGP_C57BL6NJ_T0051154.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3264508 3271823 + Batf2 protein_coding retained_intron MGP_C57BL6NJ_T0051155.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3264508 3271422 + Batf2 protein_coding retained_intron MGP_C57BL6NJ_T0051156.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3264514 3271813 + Batf2 protein_coding processed_transcript MGP_C57BL6NJ_T0051157.1 MGP_C57BL6NJ_G0025164.1 mouse_genomes_project 19 3264543 3271422 + Batf2 protein_coding retained_intron MGP_C57BL6NJ_T0018136.1 MGP_C57BL6NJ_G0015767.1 mouse_genomes_project 19 1357322 1370803 + A930001C03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018137.1 MGP_C57BL6NJ_G0015767.1 mouse_genomes_project 19 1357878 1370660 + A930001C03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018138.1 MGP_C57BL6NJ_G0015767.1 mouse_genomes_project 19 1363937 1370340 + A930001C03Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0018139.1 MGP_C57BL6NJ_G0015767.1 mouse_genomes_project 19 1369289 1370809 + A930001C03Rik processed_transcript retained_intron MGP_C57BL6NJ_T0099068.1 MGP_C57BL6NJ_G0037132.1 mouse_genomes_project 19 52044014 52044051 + Gm25659 rRNA rRNA MGP_C57BL6NJ_T0052134.1 MGP_C57BL6NJ_G0025512.1 mouse_genomes_project 19 39185945 39224129 + MGP_C57BL6NJ_P0052134 Cyp2c55 protein_coding protein_coding MGP_C57BL6NJ_T0050963.1 MGP_C57BL6NJ_G0025106.1 mouse_genomes_project 19 2083468 2091258 - MGP_C57BL6NJ_P0050963 Rab1b protein_coding protein_coding MGP_C57BL6NJ_T0013721.1 MGP_C57BL6NJ_G0011766.1 mouse_genomes_project 19 58508662 58509010 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052116.1 MGP_C57BL6NJ_G0025507.1 mouse_genomes_project 19 38514413 38525756 + MGP_C57BL6NJ_P0052116 Slc35g1 protein_coding protein_coding MGP_C57BL6NJ_T0051032.1 MGP_C57BL6NJ_G0025131.1 mouse_genomes_project 19 2647123 2654201 - MGP_C57BL6NJ_P0051032 Kat5 protein_coding protein_coding MGP_C57BL6NJ_T0100169.1 MGP_C57BL6NJ_G0038215.1 mouse_genomes_project 19 63229886 63230003 - Gm22365 snRNA snRNA MGP_C57BL6NJ_T0101459.1 MGP_C57BL6NJ_G0039505.1 mouse_genomes_project 19 62830253 62830385 - Snora19 snoRNA snoRNA MGP_C57BL6NJ_T0050854.1 MGP_C57BL6NJ_G0025070.1 mouse_genomes_project 19 1074034 1080440 - MGP_C57BL6NJ_P0050854 Rad9a protein_coding protein_coding MGP_C57BL6NJ_T0051656.1 MGP_C57BL6NJ_G0025312.1 mouse_genomes_project 19 9750067 9751119 + MGP_C57BL6NJ_P0051656 Olfr1420 protein_coding protein_coding MGP_C57BL6NJ_T0051898.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28073627 28093343 - MGP_C57BL6NJ_P0051898 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0051900.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28081760 28151101 - MGP_C57BL6NJ_P0051900 4430402I18Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051901.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28104525 28147525 - MGP_C57BL6NJ_P0051901 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0051902.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28104991 28151171 - MGP_C57BL6NJ_P0051902 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0051903.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28104994 28112399 - 4430402I18Rik protein_coding processed_transcript MGP_C57BL6NJ_T0051904.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28105149 28146958 - MGP_C57BL6NJ_P0051904 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0051905.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28105149 28146958 - MGP_C57BL6NJ_P0051905 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0051906.1 MGP_C57BL6NJ_G0025430.1 mouse_genomes_project 19 28131932 28147279 - MGP_C57BL6NJ_P0051906 4430402I18Rik protein_coding protein_coding MGP_C57BL6NJ_T0052704.1 MGP_C57BL6NJ_G0025700.1 mouse_genomes_project 19 61174912 61192656 + MGP_C57BL6NJ_P0052704 Kcnk18 protein_coding protein_coding MGP_C57BL6NJ_T0010546.1 MGP_C57BL6NJ_G0008631.1 mouse_genomes_project 19 48903478 48903560 - Gm22240 miRNA miRNA MGP_C57BL6NJ_T0007287.1 MGP_C57BL6NJ_G0005980.1 mouse_genomes_project 19 61457678 61528900 + 2700089I24Rik lincRNA lincRNA MGP_C57BL6NJ_T0051471.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6365450 6375458 + MGP_C57BL6NJ_P0051471 Mta2 protein_coding protein_coding MGP_C57BL6NJ_T0051472.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6366068 6369441 + Mta2 protein_coding processed_transcript MGP_C57BL6NJ_T0051473.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6366081 6370295 + Mta2 protein_coding processed_transcript MGP_C57BL6NJ_T0051474.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6367609 6370696 + Mta2 protein_coding retained_intron MGP_C57BL6NJ_T0051475.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6368662 6370316 + Mta2 protein_coding processed_transcript MGP_C57BL6NJ_T0051476.1 MGP_C57BL6NJ_G0025240.1 mouse_genomes_project 19 6369967 6371258 + Mta2 protein_coding retained_intron MGP_C57BL6NJ_T0010511.1 MGP_C57BL6NJ_G0008596.1 mouse_genomes_project 19 4004914 4004973 - Mir5046 miRNA miRNA MGP_C57BL6NJ_T0051912.1 MGP_C57BL6NJ_G0025434.1 mouse_genomes_project 19 28290533 28334294 + MGP_C57BL6NJ_P0051912 Rcl1 protein_coding protein_coding MGP_C57BL6NJ_T0051716.1 MGP_C57BL6NJ_G0025356.1 mouse_genomes_project 19 11436653 11437580 + MGP_C57BL6NJ_P0051716 Olfr1467 protein_coding protein_coding MGP_C57BL6NJ_T0052357.1 MGP_C57BL6NJ_G0025590.1 mouse_genomes_project 19 45360915 45448388 + MGP_C57BL6NJ_P0052357 Pax2 protein_coding protein_coding MGP_C57BL6NJ_T0052358.1 MGP_C57BL6NJ_G0025590.1 mouse_genomes_project 19 45362264 45448408 + MGP_C57BL6NJ_P0052358 Pax2 protein_coding protein_coding MGP_C57BL6NJ_T0052359.1 MGP_C57BL6NJ_G0025590.1 mouse_genomes_project 19 45367437 45428095 + MGP_C57BL6NJ_P0052359 Pax2 protein_coding protein_coding MGP_C57BL6NJ_T0052107.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364781 38417622 + MGP_C57BL6NJ_P0052107 protein_coding protein_coding MGP_C57BL6NJ_T0052108.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364812 38412613 + MGP_C57BL6NJ_P0052108 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052109.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364822 38410484 + MGP_C57BL6NJ_P0052109 protein_coding protein_coding MGP_C57BL6NJ_T0052110.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364891 38410483 + MGP_C57BL6NJ_P0052110 protein_coding protein_coding MGP_C57BL6NJ_T0052111.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364905 38401310 + MGP_C57BL6NJ_P0052111 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052112.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38364916 38409947 + MGP_C57BL6NJ_P0052112 protein_coding protein_coding MGP_C57BL6NJ_T0052113.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38365007 38366176 + protein_coding retained_intron MGP_C57BL6NJ_T0052114.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38365092 38369308 + protein_coding retained_intron MGP_C57BL6NJ_T0052115.1 MGP_C57BL6NJ_G0025506.1 mouse_genomes_project 19 38365671 38404596 + protein_coding retained_intron MGP_C57BL6NJ_T0052239.1 MGP_C57BL6NJ_G0025548.1 mouse_genomes_project 19 42359733 42412214 + MGP_C57BL6NJ_P0052239 Ubtd1 protein_coding protein_coding MGP_C57BL6NJ_T0052337.1 MGP_C57BL6NJ_G0025582.1 mouse_genomes_project 19 44834732 44849270 + MGP_C57BL6NJ_P0052337 Scd2 protein_coding protein_coding MGP_C57BL6NJ_T0051027.1 MGP_C57BL6NJ_G0025130.1 mouse_genomes_project 19 2645979 2647546 + MGP_C57BL6NJ_P0051027 Rnaseh2c protein_coding protein_coding MGP_C57BL6NJ_T0051028.1 MGP_C57BL6NJ_G0025130.1 mouse_genomes_project 19 2645993 2646974 + Rnaseh2c protein_coding retained_intron MGP_C57BL6NJ_T0051029.1 MGP_C57BL6NJ_G0025130.1 mouse_genomes_project 19 2646081 2647039 + Rnaseh2c protein_coding retained_intron MGP_C57BL6NJ_T0051030.1 MGP_C57BL6NJ_G0025130.1 mouse_genomes_project 19 2646341 2647045 + MGP_C57BL6NJ_P0051030 Rnaseh2c protein_coding protein_coding MGP_C57BL6NJ_T0051031.1 MGP_C57BL6NJ_G0025130.1 mouse_genomes_project 19 2646516 2647041 + Rnaseh2c protein_coding retained_intron MGP_C57BL6NJ_T0052496.1 MGP_C57BL6NJ_G0025636.1 mouse_genomes_project 19 47981747 47988902 - MGP_C57BL6NJ_P0052496 Usmg5 protein_coding protein_coding MGP_C57BL6NJ_T0050961.1 MGP_C57BL6NJ_G0025104.1 mouse_genomes_project 19 2072766 2077109 + MGP_C57BL6NJ_P0050961 Yif1a protein_coding protein_coding MGP_C57BL6NJ_T0013691.1 MGP_C57BL6NJ_G0011736.1 mouse_genomes_project 19 4958977 4960145 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051600.1 MGP_C57BL6NJ_G0025291.1 mouse_genomes_project 19 9079800 9092949 - MGP_C57BL6NJ_P0051600 Ms4a14 protein_coding protein_coding MGP_C57BL6NJ_T0050956.1 MGP_C57BL6NJ_G0025103.1 mouse_genomes_project 19 2055380 2056654 - Tmem151a protein_coding processed_transcript MGP_C57BL6NJ_T0050957.1 MGP_C57BL6NJ_G0025103.1 mouse_genomes_project 19 2055556 2069725 - MGP_C57BL6NJ_P0050957 Tmem151a protein_coding protein_coding MGP_C57BL6NJ_T0050958.1 MGP_C57BL6NJ_G0025103.1 mouse_genomes_project 19 2056375 2069725 - MGP_C57BL6NJ_P0050958 Tmem151a protein_coding protein_coding MGP_C57BL6NJ_T0050959.1 MGP_C57BL6NJ_G0025103.1 mouse_genomes_project 19 2063567 2069769 - MGP_C57BL6NJ_P0050959 Tmem151a protein_coding protein_coding MGP_C57BL6NJ_T0050960.1 MGP_C57BL6NJ_G0025103.1 mouse_genomes_project 19 2067139 2069119 - Tmem151a protein_coding processed_transcript MGP_C57BL6NJ_T0052576.1 MGP_C57BL6NJ_G0025664.1 mouse_genomes_project 19 55372096 55411065 + MGP_C57BL6NJ_P0052576 Pdcd4 protein_coding protein_coding MGP_C57BL6NJ_T0052577.1 MGP_C57BL6NJ_G0025664.1 mouse_genomes_project 19 55383215 55411065 + MGP_C57BL6NJ_P0052577 Pdcd4 protein_coding protein_coding MGP_C57BL6NJ_T0052578.1 MGP_C57BL6NJ_G0025664.1 mouse_genomes_project 19 55383215 55411065 + MGP_C57BL6NJ_P0052578 Pdcd4 protein_coding protein_coding MGP_C57BL6NJ_T0052201.1 MGP_C57BL6NJ_G0025537.1 mouse_genomes_project 19 41622034 41740408 - MGP_C57BL6NJ_P0052201 Pik3ap1 protein_coding protein_coding MGP_C57BL6NJ_T0004028.1 MGP_C57BL6NJ_G0003595.1 mouse_genomes_project 19 58070426 58072406 + Gm17197 antisense antisense MGP_C57BL6NJ_T0102985.1 MGP_C57BL6NJ_G0040779.1 mouse_genomes_project 19 6806328 6872001 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0018174.1 MGP_C57BL6NJ_G0015777.1 mouse_genomes_project 19 25668627 25671225 - Gm20616 processed_transcript processed_transcript MGP_C57BL6NJ_T0018175.1 MGP_C57BL6NJ_G0015777.1 mouse_genomes_project 19 25668838 25671216 - Gm20616 processed_transcript processed_transcript MGP_C57BL6NJ_T0050824.1 MGP_C57BL6NJ_G0025061.1 mouse_genomes_project 19 982238 999501 - MGP_C57BL6NJ_P0050824 Aip protein_coding protein_coding MGP_C57BL6NJ_T0050825.1 MGP_C57BL6NJ_G0025061.1 mouse_genomes_project 19 982256 989356 - MGP_C57BL6NJ_P0050825 Aip protein_coding protein_coding MGP_C57BL6NJ_T0050826.1 MGP_C57BL6NJ_G0025061.1 mouse_genomes_project 19 983239 999491 - MGP_C57BL6NJ_P0050826 Aip protein_coding protein_coding MGP_C57BL6NJ_T0050827.1 MGP_C57BL6NJ_G0025061.1 mouse_genomes_project 19 986048 997190 - Aip protein_coding processed_transcript MGP_C57BL6NJ_T0050828.1 MGP_C57BL6NJ_G0025061.1 mouse_genomes_project 19 988713 999433 - Aip protein_coding retained_intron MGP_C57BL6NJ_T0099361.1 MGP_C57BL6NJ_G0037419.1 mouse_genomes_project 19 57514503 57518715 + Ppnr sense_intronic sense_intronic MGP_C57BL6NJ_T0050802.1 MGP_C57BL6NJ_G0025057.1 mouse_genomes_project 19 917580 919550 - MGP_C57BL6NJ_P0050802 BC021614 protein_coding protein_coding MGP_C57BL6NJ_T0050803.1 MGP_C57BL6NJ_G0025057.1 mouse_genomes_project 19 917581 919399 - MGP_C57BL6NJ_P0050803 BC021614 protein_coding protein_coding MGP_C57BL6NJ_T0013698.1 MGP_C57BL6NJ_G0011743.1 mouse_genomes_project 19 10590848 10591440 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051253.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3525367 3660503 + MGP_C57BL6NJ_P0051253 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051254.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3525374 3580409 + Nrxn2 protein_coding retained_intron MGP_C57BL6NJ_T0051255.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3525374 3660502 + MGP_C57BL6NJ_P0051255 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051256.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3525401 3659564 + MGP_C57BL6NJ_P0051256 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051257.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3536120 3660503 + MGP_C57BL6NJ_P0051257 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051258.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3536829 3589597 + MGP_C57BL6NJ_P0051258 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051259.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3536950 3590556 + MGP_C57BL6NJ_P0051259 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051260.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3557135 3590570 + Nrxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0051261.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3557973 3590668 + Nrxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0051262.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3568225 3599885 + Nrxn2 protein_coding retained_intron MGP_C57BL6NJ_T0051263.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3590325 3599884 + Nrxn2 protein_coding retained_intron MGP_C57BL6NJ_T0051264.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3625317 3637151 + Nrxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0051265.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3625474 3660503 + MGP_C57BL6NJ_P0051265 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051266.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3625481 3671457 + MGP_C57BL6NJ_P0051266 Nrxn2 protein_coding protein_coding MGP_C57BL6NJ_T0051267.1 MGP_C57BL6NJ_G0025176.1 mouse_genomes_project 19 3644490 3659582 + Nrxn2 protein_coding processed_transcript MGP_C57BL6NJ_T0052475.1 MGP_C57BL6NJ_G0025626.1 mouse_genomes_project 19 47422131 47451324 + MGP_C57BL6NJ_P0052475 Sfxn2 protein_coding protein_coding MGP_C57BL6NJ_T0050914.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1731937 1743172 - MGP_C57BL6NJ_P0050914 Rbm4 protein_coding protein_coding MGP_C57BL6NJ_T0050917.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1732797 1743122 - MGP_C57BL6NJ_P0050917 Rbm4 protein_coding protein_coding MGP_C57BL6NJ_T0050918.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1732919 1743171 - MGP_C57BL6NJ_P0050918 Rbm4 protein_coding protein_coding MGP_C57BL6NJ_T0050920.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1735417 1743131 - MGP_C57BL6NJ_P0050920 Rbm4 protein_coding protein_coding MGP_C57BL6NJ_T0050921.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1735581 1743151 - MGP_C57BL6NJ_P0050921 Rbm4 protein_coding protein_coding MGP_C57BL6NJ_T0050922.1 MGP_C57BL6NJ_G0025086.1 mouse_genomes_project 19 1737712 1743154 - Rbm4 protein_coding retained_intron MGP_C57BL6NJ_T0007259.1 MGP_C57BL6NJ_G0005959.1 mouse_genomes_project 19 35689212 35777709 - A830019P07Rik lincRNA lincRNA MGP_C57BL6NJ_T0010515.1 MGP_C57BL6NJ_G0008600.1 mouse_genomes_project 19 6134486 6134595 + Mir6992 miRNA miRNA MGP_C57BL6NJ_T0050851.1 MGP_C57BL6NJ_G0025067.1 mouse_genomes_project 19 1042034 1053485 - MGP_C57BL6NJ_P0050851 Carns1 protein_coding protein_coding MGP_C57BL6NJ_T0051973.1 MGP_C57BL6NJ_G0025453.1 mouse_genomes_project 19 30468866 30472616 + MGP_C57BL6NJ_P0051973 Cstf2t protein_coding protein_coding MGP_C57BL6NJ_T0052648.1 MGP_C57BL6NJ_G0025684.1 mouse_genomes_project 19 58633716 58673224 + MGP_C57BL6NJ_P0052648 Vwa2 protein_coding protein_coding MGP_C57BL6NJ_T0052103.1 MGP_C57BL6NJ_G0025504.1 mouse_genomes_project 19 38217567 38270786 + MGP_C57BL6NJ_P0052103 Pde6c protein_coding protein_coding MGP_C57BL6NJ_T0052104.1 MGP_C57BL6NJ_G0025504.1 mouse_genomes_project 19 38217567 38270786 + MGP_C57BL6NJ_P0052104 Pde6c protein_coding protein_coding MGP_C57BL6NJ_T0052105.1 MGP_C57BL6NJ_G0025504.1 mouse_genomes_project 19 38217732 38270578 + MGP_C57BL6NJ_P0052105 Pde6c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050714.1 MGP_C57BL6NJ_G0025037.1 mouse_genomes_project 19 134303 153253 + MGP_C57BL6NJ_P0050714 Mtl5 protein_coding protein_coding MGP_C57BL6NJ_T0050715.1 MGP_C57BL6NJ_G0025037.1 mouse_genomes_project 19 134331 143606 + MGP_C57BL6NJ_P0050715 Mtl5 protein_coding protein_coding MGP_C57BL6NJ_T0050716.1 MGP_C57BL6NJ_G0025037.1 mouse_genomes_project 19 134825 153215 + MGP_C57BL6NJ_P0050716 Mtl5 protein_coding protein_coding MGP_C57BL6NJ_T0050717.1 MGP_C57BL6NJ_G0025037.1 mouse_genomes_project 19 134825 152719 + MGP_C57BL6NJ_P0050717 Mtl5 protein_coding protein_coding MGP_C57BL6NJ_T0051676.1 MGP_C57BL6NJ_G0025331.1 mouse_genomes_project 19 10590811 10613937 + MGP_C57BL6NJ_P0051676 Fam111a protein_coding protein_coding MGP_C57BL6NJ_T0051677.1 MGP_C57BL6NJ_G0025331.1 mouse_genomes_project 19 10590811 10613945 + MGP_C57BL6NJ_P0051677 Fam111a protein_coding protein_coding MGP_C57BL6NJ_T0051678.1 MGP_C57BL6NJ_G0025331.1 mouse_genomes_project 19 10596136 10613939 + MGP_C57BL6NJ_P0051678 Fam111a protein_coding protein_coding MGP_C57BL6NJ_T0050862.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1165189 1181548 - MGP_C57BL6NJ_P0050862 Ankrd13d protein_coding protein_coding MGP_C57BL6NJ_T0050863.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1165189 1180588 - MGP_C57BL6NJ_P0050863 Ankrd13d protein_coding protein_coding MGP_C57BL6NJ_T0050864.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1165191 1181550 - MGP_C57BL6NJ_P0050864 Ankrd13d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050865.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1165407 1166304 - MGP_C57BL6NJ_P0050865 Ankrd13d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050866.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1167630 1179424 - MGP_C57BL6NJ_P0050866 Ankrd13d protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050867.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1177878 1181550 - Ankrd13d protein_coding processed_transcript MGP_C57BL6NJ_T0050868.1 MGP_C57BL6NJ_G0025074.1 mouse_genomes_project 19 1179058 1181446 - MGP_C57BL6NJ_P0050868 Ankrd13d protein_coding protein_coding MGP_C57BL6NJ_T0013700.1 MGP_C57BL6NJ_G0011745.1 mouse_genomes_project 19 13163738 13166644 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004009.1 MGP_C57BL6NJ_G0003581.1 mouse_genomes_project 19 10736484 10751596 - Gm15962 antisense antisense MGP_C57BL6NJ_T0004010.1 MGP_C57BL6NJ_G0003581.1 mouse_genomes_project 19 10746182 10751640 - Gm15962 antisense antisense MGP_C57BL6NJ_T0010539.1 MGP_C57BL6NJ_G0008624.1 mouse_genomes_project 19 42677232 42677331 + Gm26339 miRNA miRNA MGP_C57BL6NJ_T0051991.1 MGP_C57BL6NJ_G0025457.1 mouse_genomes_project 19 31982508 32015368 + MGP_C57BL6NJ_P0051991 Minpp1 protein_coding protein_coding MGP_C57BL6NJ_T0051380.1 MGP_C57BL6NJ_G0025217.1 mouse_genomes_project 19 6043249 6058035 + MGP_C57BL6NJ_P0051380 Chrm1 protein_coding protein_coding MGP_C57BL6NJ_T0051381.1 MGP_C57BL6NJ_G0025217.1 mouse_genomes_project 19 6043554 6063468 + MGP_C57BL6NJ_P0051381 Chrm1 protein_coding protein_coding MGP_C57BL6NJ_T0051382.1 MGP_C57BL6NJ_G0025217.1 mouse_genomes_project 19 6043554 6061448 + MGP_C57BL6NJ_P0051382 Chrm1 protein_coding protein_coding MGP_C57BL6NJ_T0051489.1 MGP_C57BL6NJ_G0025246.1 mouse_genomes_project 19 6814751 6815799 + MGP_C57BL6NJ_P0051489 protein_coding protein_coding MGP_C57BL6NJ_T0051632.1 MGP_C57BL6NJ_G0025301.1 mouse_genomes_project 19 9450653 9460067 - MGP_C57BL6NJ_P0051632 Ms4a2 protein_coding protein_coding MGP_C57BL6NJ_T0051633.1 MGP_C57BL6NJ_G0025301.1 mouse_genomes_project 19 9452087 9460102 - MGP_C57BL6NJ_P0051633 Ms4a2 protein_coding protein_coding MGP_C57BL6NJ_T0051634.1 MGP_C57BL6NJ_G0025301.1 mouse_genomes_project 19 9452323 9460026 - MGP_C57BL6NJ_P0051634 Ms4a2 protein_coding protein_coding MGP_C57BL6NJ_T0051635.1 MGP_C57BL6NJ_G0025301.1 mouse_genomes_project 19 9452603 9460042 - MGP_C57BL6NJ_P0051635 Ms4a2 protein_coding protein_coding MGP_C57BL6NJ_T0051636.1 MGP_C57BL6NJ_G0025301.1 mouse_genomes_project 19 9454059 9460071 - Ms4a2 protein_coding processed_transcript MGP_C57BL6NJ_T0052332.1 MGP_C57BL6NJ_G0025579.1 mouse_genomes_project 19 44657561 44667868 - MGP_C57BL6NJ_P0052332 Bloc1s2 protein_coding protein_coding MGP_C57BL6NJ_T0052333.1 MGP_C57BL6NJ_G0025579.1 mouse_genomes_project 19 44663111 44667868 - MGP_C57BL6NJ_P0052333 Bloc1s2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051519.1 MGP_C57BL6NJ_G0025259.1 mouse_genomes_project 19 8076863 8144531 + MGP_C57BL6NJ_P0051519 Syt7 protein_coding protein_coding MGP_C57BL6NJ_T0051520.1 MGP_C57BL6NJ_G0025259.1 mouse_genomes_project 19 8076863 8144531 + MGP_C57BL6NJ_P0051520 Syt7 protein_coding protein_coding MGP_C57BL6NJ_T0051521.1 MGP_C57BL6NJ_G0025259.1 mouse_genomes_project 19 8076863 8144531 + MGP_C57BL6NJ_P0051521 Syt7 protein_coding protein_coding MGP_C57BL6NJ_T0051522.1 MGP_C57BL6NJ_G0025259.1 mouse_genomes_project 19 8077256 8144534 + MGP_C57BL6NJ_P0051522 Syt7 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0010505.1 MGP_C57BL6NJ_G0008590.1 mouse_genomes_project 19 2731224 2731297 - Mir6987 miRNA miRNA MGP_C57BL6NJ_T0018140.1 MGP_C57BL6NJ_G0015768.1 mouse_genomes_project 19 2862177 2863165 + Gm20417 processed_transcript processed_transcript MGP_C57BL6NJ_T0051546.1 MGP_C57BL6NJ_G0025274.1 mouse_genomes_project 19 8564531 8568149 + Slc15a3 protein_coding processed_transcript MGP_C57BL6NJ_T0051547.1 MGP_C57BL6NJ_G0025274.1 mouse_genomes_project 19 8567348 8585675 + MGP_C57BL6NJ_P0051547 Slc15a3 protein_coding protein_coding MGP_C57BL6NJ_T0051548.1 MGP_C57BL6NJ_G0025274.1 mouse_genomes_project 19 8567354 8568273 + Slc15a3 protein_coding processed_transcript MGP_C57BL6NJ_T0051549.1 MGP_C57BL6NJ_G0025274.1 mouse_genomes_project 19 8567696 8587122 + Slc15a3 protein_coding retained_intron MGP_C57BL6NJ_T0051653.1 MGP_C57BL6NJ_G0025309.1 mouse_genomes_project 19 9701954 9706047 - MGP_C57BL6NJ_P0051653 Olfr1418 protein_coding protein_coding MGP_C57BL6NJ_T0052365.1 MGP_C57BL6NJ_G0025593.1 mouse_genomes_project 19 45633797 45635226 - MGP_C57BL6NJ_P0052365 Mrpl43 protein_coding protein_coding MGP_C57BL6NJ_T0010551.1 MGP_C57BL6NJ_G0008636.1 mouse_genomes_project 19 59913650 59913720 + Mir5623 miRNA miRNA MGP_C57BL6NJ_T0051846.1 MGP_C57BL6NJ_G0025420.1 mouse_genomes_project 19 24652797 24667619 + MGP_C57BL6NJ_P0051846 Dmrt3 protein_coding protein_coding MGP_C57BL6NJ_T0011746.1 MGP_C57BL6NJ_G0009831.1 mouse_genomes_project 19 42118035 42118273 + Gm22601 misc_RNA misc_RNA MGP_C57BL6NJ_T0051928.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28761739 28850871 + MGP_C57BL6NJ_P0051928 Ric1 protein_coding protein_coding MGP_C57BL6NJ_T0051929.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28761792 28805799 + MGP_C57BL6NJ_P0051929 Ric1 protein_coding protein_coding MGP_C57BL6NJ_T0051930.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28761839 28823659 + Ric1 protein_coding retained_intron MGP_C57BL6NJ_T0051931.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28774112 28847241 + MGP_C57BL6NJ_P0051931 Ric1 protein_coding protein_coding MGP_C57BL6NJ_T0051932.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28838568 28848226 + MGP_C57BL6NJ_P0051932 Ric1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051933.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28840300 28842938 + Ric1 protein_coding retained_intron MGP_C57BL6NJ_T0051934.1 MGP_C57BL6NJ_G0025441.1 mouse_genomes_project 19 28840885 28848937 + MGP_C57BL6NJ_P0051934 Ric1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051836.1 MGP_C57BL6NJ_G0025415.1 mouse_genomes_project 19 23870902 23873247 - MGP_C57BL6NJ_P0051836 Foxd4 protein_coding protein_coding MGP_C57BL6NJ_T0007229.1 MGP_C57BL6NJ_G0005938.1 mouse_genomes_project 19 2890603 2911354 - Neat1 lincRNA lincRNA MGP_C57BL6NJ_T0007230.1 MGP_C57BL6NJ_G0005938.1 mouse_genomes_project 19 2908182 2911352 - Neat1 lincRNA lincRNA MGP_C57BL6NJ_T0007231.1 MGP_C57BL6NJ_G0005938.1 mouse_genomes_project 19 2909556 2911135 - Neat1 lincRNA lincRNA MGP_C57BL6NJ_T0007244.1 MGP_C57BL6NJ_G0005950.1 mouse_genomes_project 19 22960027 22961687 + 1700021P04Rik lincRNA lincRNA MGP_C57BL6NJ_T0051160.1 MGP_C57BL6NJ_G0025166.1 mouse_genomes_project 19 3330089 3331478 + MGP_C57BL6NJ_P0051160 Gpha2 protein_coding protein_coding MGP_C57BL6NJ_T0051161.1 MGP_C57BL6NJ_G0025166.1 mouse_genomes_project 19 3330097 3331478 + MGP_C57BL6NJ_P0051161 Gpha2 protein_coding protein_coding MGP_C57BL6NJ_T0052590.1 MGP_C57BL6NJ_G0025670.1 mouse_genomes_project 19 56832035 56876643 - MGP_C57BL6NJ_P0052590 Gucy2g protein_coding protein_coding MGP_C57BL6NJ_T0052681.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60107854 60345039 - MGP_C57BL6NJ_P0052681 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052682.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60107862 60344233 - MGP_C57BL6NJ_P0052682 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052683.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60108942 60344107 - MGP_C57BL6NJ_P0052683 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052684.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60110412 60344942 - MGP_C57BL6NJ_P0052684 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052685.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60110412 60345000 - MGP_C57BL6NJ_P0052685 Gfra1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052686.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60342975 60344647 - MGP_C57BL6NJ_P0052686 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052687.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60342992 60345550 - MGP_C57BL6NJ_P0052687 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052688.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60343061 60344261 - MGP_C57BL6NJ_P0052688 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0052689.1 MGP_C57BL6NJ_G0025690.1 mouse_genomes_project 19 60343964 60344802 - MGP_C57BL6NJ_P0052689 Gfra1 protein_coding protein_coding MGP_C57BL6NJ_T0004022.1 MGP_C57BL6NJ_G0003589.1 mouse_genomes_project 19 45438015 45445454 - 1700039E22Rik antisense antisense MGP_C57BL6NJ_T0051837.1 MGP_C57BL6NJ_G0025416.1 mouse_genomes_project 19 23888255 23932988 - MGP_C57BL6NJ_P0051837 Cbwd1 protein_coding protein_coding MGP_C57BL6NJ_T0007265.1 MGP_C57BL6NJ_G0005964.1 mouse_genomes_project 19 44081644 44083193 - Gm20467 lincRNA lincRNA MGP_C57BL6NJ_T0050981.1 MGP_C57BL6NJ_G0025115.1 mouse_genomes_project 19 2394864 2407915 - MGP_C57BL6NJ_P0050981 Sart1 protein_coding protein_coding MGP_C57BL6NJ_T0051420.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6170199 6172145 - MGP_C57BL6NJ_P0051420 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051421.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172031 6185665 - MGP_C57BL6NJ_P0051421 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051422.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172164 6174640 - Taf6l protein_coding retained_intron MGP_C57BL6NJ_T0051423.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172169 6185606 - MGP_C57BL6NJ_P0051423 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051424.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172171 6185665 - MGP_C57BL6NJ_P0051424 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051425.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172173 6185766 - MGP_C57BL6NJ_P0051425 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051426.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172206 6183225 - MGP_C57BL6NJ_P0051426 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051427.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6172206 6183225 - MGP_C57BL6NJ_P0051427 Taf6l protein_coding protein_coding MGP_C57BL6NJ_T0051428.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6173114 6177157 - Taf6l protein_coding retained_intron MGP_C57BL6NJ_T0051429.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6176021 6185630 - Taf6l protein_coding retained_intron MGP_C57BL6NJ_T0051430.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6176657 6181549 - Taf6l protein_coding processed_transcript MGP_C57BL6NJ_T0051431.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6176683 6181903 - Taf6l protein_coding retained_intron MGP_C57BL6NJ_T0051432.1 MGP_C57BL6NJ_G0025223.1 mouse_genomes_project 19 6181036 6185614 - Taf6l protein_coding retained_intron MGP_C57BL6NJ_T0050929.1 MGP_C57BL6NJ_G0025089.1 mouse_genomes_project 19 1789648 1792811 + MGP_C57BL6NJ_P0050929 Ccdc87 protein_coding protein_coding MGP_C57BL6NJ_T0050975.1 MGP_C57BL6NJ_G0025110.1 mouse_genomes_project 19 2309259 2319495 + MGP_C57BL6NJ_P0050975 Gal3st3 protein_coding protein_coding MGP_C57BL6NJ_T0051054.1 MGP_C57BL6NJ_G0025138.1 mouse_genomes_project 19 2784365 2785932 - MGP_C57BL6NJ_P0051054 Fam89b protein_coding protein_coding MGP_C57BL6NJ_T0051055.1 MGP_C57BL6NJ_G0025138.1 mouse_genomes_project 19 2784365 2785912 - MGP_C57BL6NJ_P0051055 Fam89b protein_coding protein_coding MGP_C57BL6NJ_T0051056.1 MGP_C57BL6NJ_G0025138.1 mouse_genomes_project 19 2784365 2785930 - MGP_C57BL6NJ_P0051056 Fam89b protein_coding protein_coding MGP_C57BL6NJ_T0051451.1 MGP_C57BL6NJ_G0025230.1 mouse_genomes_project 19 6262690 6265815 + MGP_C57BL6NJ_P0051451 Lrrn4cl protein_coding protein_coding MGP_C57BL6NJ_T0007276.1 MGP_C57BL6NJ_G0005972.1 mouse_genomes_project 19 51887242 52006417 + Gm26629 lincRNA lincRNA MGP_C57BL6NJ_T0013696.1 MGP_C57BL6NJ_G0011741.1 mouse_genomes_project 19 9537398 9538191 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051433.1 MGP_C57BL6NJ_G0025224.1 mouse_genomes_project 19 6194254 6199866 - MGP_C57BL6NJ_P0051433 Polr2g protein_coding protein_coding MGP_C57BL6NJ_T0052018.1 MGP_C57BL6NJ_G0025472.1 mouse_genomes_project 19 34167418 34168768 - MGP_C57BL6NJ_P0052018 Ch25h protein_coding protein_coding MGP_C57BL6NJ_T0052331.1 MGP_C57BL6NJ_G0025578.1 mouse_genomes_project 19 44627292 44654195 - MGP_C57BL6NJ_P0052331 Cwf19l1 protein_coding protein_coding MGP_C57BL6NJ_T0051992.1 MGP_C57BL6NJ_G0025458.1 mouse_genomes_project 19 32139430 32190909 + MGP_C57BL6NJ_P0051992 Papss2 protein_coding protein_coding MGP_C57BL6NJ_T0051993.1 MGP_C57BL6NJ_G0025458.1 mouse_genomes_project 19 32139597 32190916 + MGP_C57BL6NJ_P0051993 Papss2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050771.1 MGP_C57BL6NJ_G0025045.1 mouse_genomes_project 19 719452 723300 - MGP_C57BL6NJ_P0050771 Ndufs8 protein_coding protein_coding MGP_C57BL6NJ_T0052250.1 MGP_C57BL6NJ_G0025555.1 mouse_genomes_project 19 42535511 42539815 + MGP_C57BL6NJ_P0052250 Marveld1 protein_coding protein_coding MGP_C57BL6NJ_T0052251.1 MGP_C57BL6NJ_G0025555.1 mouse_genomes_project 19 42535819 42539574 + MGP_C57BL6NJ_P0052251 Marveld1 protein_coding protein_coding MGP_C57BL6NJ_T0098854.1 MGP_C57BL6NJ_G0036918.1 mouse_genomes_project 19 62255717 62257062 + pseudogene pseudogene MGP_C57BL6NJ_T0051894.1 MGP_C57BL6NJ_G0025429.1 mouse_genomes_project 19 28012852 28059580 + Slc1a1 protein_coding retained_intron MGP_C57BL6NJ_T0051895.1 MGP_C57BL6NJ_G0025429.1 mouse_genomes_project 19 28012877 28095424 + MGP_C57BL6NJ_P0051895 Slc1a1 protein_coding protein_coding MGP_C57BL6NJ_T0051896.1 MGP_C57BL6NJ_G0025429.1 mouse_genomes_project 19 28012938 28087452 + Slc1a1 protein_coding retained_intron MGP_C57BL6NJ_T0051897.1 MGP_C57BL6NJ_G0025429.1 mouse_genomes_project 19 28073599 28093341 + Slc1a1 protein_coding retained_intron MGP_C57BL6NJ_T0051899.1 MGP_C57BL6NJ_G0025429.1 mouse_genomes_project 19 28076378 28094102 + Slc1a1 protein_coding retained_intron MGP_C57BL6NJ_T0101444.1 MGP_C57BL6NJ_G0039490.1 mouse_genomes_project 19 17771453 17771585 + Gm25437 snoRNA snoRNA MGP_C57BL6NJ_T0102456.1 MGP_C57BL6NJ_G0040348.1 mouse_genomes_project 19 60613247 60613661 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102457.1 MGP_C57BL6NJ_G0040348.1 mouse_genomes_project 19 60613247 60615654 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102458.1 MGP_C57BL6NJ_G0040348.1 mouse_genomes_project 19 60613412 60629748 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0018141.1 MGP_C57BL6NJ_G0015769.1 mouse_genomes_project 19 3372100 3379911 - Gm14963 processed_transcript processed_transcript MGP_C57BL6NJ_T0052200.1 MGP_C57BL6NJ_G0025536.1 mouse_genomes_project 19 41556620 41609813 - MGP_C57BL6NJ_P0052200 Tm9sf3 protein_coding protein_coding MGP_C57BL6NJ_T0052248.1 MGP_C57BL6NJ_G0025554.1 mouse_genomes_project 19 42510131 42515918 - MGP_C57BL6NJ_P0052248 Avpi1 protein_coding protein_coding MGP_C57BL6NJ_T0052249.1 MGP_C57BL6NJ_G0025554.1 mouse_genomes_project 19 42511637 42515848 - MGP_C57BL6NJ_P0052249 Avpi1 protein_coding protein_coding MGP_C57BL6NJ_T0013711.1 MGP_C57BL6NJ_G0011756.1 mouse_genomes_project 19 27940300 27940570 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051086.1 MGP_C57BL6NJ_G0025149.1 mouse_genomes_project 19 3073637 3102330 - MGP_C57BL6NJ_P0051086 Capn1 protein_coding protein_coding MGP_C57BL6NJ_T0051087.1 MGP_C57BL6NJ_G0025149.1 mouse_genomes_project 19 3073637 3101752 - MGP_C57BL6NJ_P0051087 Capn1 protein_coding protein_coding MGP_C57BL6NJ_T0051038.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2717408 2740961 - MGP_C57BL6NJ_P0051038 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051039.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2717411 2726721 - Pcnx3 protein_coding retained_intron MGP_C57BL6NJ_T0051040.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2717413 2740202 - MGP_C57BL6NJ_P0051040 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051041.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2718009 2718972 - Pcnx3 protein_coding retained_intron MGP_C57BL6NJ_T0051042.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2718189 2719756 - MGP_C57BL6NJ_P0051042 Pcnx3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051043.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2718764 2719300 - Pcnx3 protein_coding retained_intron MGP_C57BL6NJ_T0051044.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2726065 2736890 - MGP_C57BL6NJ_P0051044 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051045.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2727696 2731798 - MGP_C57BL6NJ_P0051045 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051046.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2731203 2735564 - MGP_C57BL6NJ_P0051046 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051047.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2731623 2736094 - MGP_C57BL6NJ_P0051047 Pcnx3 protein_coding protein_coding MGP_C57BL6NJ_T0051048.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2732154 2733757 - Pcnx3 protein_coding retained_intron MGP_C57BL6NJ_T0051049.1 MGP_C57BL6NJ_G0025134.1 mouse_genomes_project 19 2735961 2740748 - Pcnx3 protein_coding retained_intron MGP_C57BL6NJ_T0051696.1 MGP_C57BL6NJ_G0025338.1 mouse_genomes_project 19 10797766 10799739 - MGP_C57BL6NJ_P0051696 Cntf protein_coding protein_coding MGP_C57BL6NJ_T0052126.1 MGP_C57BL6NJ_G0025509.1 mouse_genomes_project 19 38948785 38982361 - MGP_C57BL6NJ_P0052126 Noc3l protein_coding protein_coding MGP_C57BL6NJ_T0051142.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3210716 3219583 - MGP_C57BL6NJ_P0051142 Snx15 protein_coding protein_coding MGP_C57BL6NJ_T0051143.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3211169 3219426 - MGP_C57BL6NJ_P0051143 Snx15 protein_coding protein_coding MGP_C57BL6NJ_T0051144.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3211949 3212960 - Snx15 protein_coding retained_intron MGP_C57BL6NJ_T0051145.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3211949 3219086 - Snx15 protein_coding processed_transcript MGP_C57BL6NJ_T0051146.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3212809 3213605 - Snx15 protein_coding processed_transcript MGP_C57BL6NJ_T0051147.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3213222 3219412 - Snx15 protein_coding retained_intron MGP_C57BL6NJ_T0051148.1 MGP_C57BL6NJ_G0025162.1 mouse_genomes_project 19 3213244 3219444 - MGP_C57BL6NJ_P0051148 Snx15 protein_coding protein_coding MGP_C57BL6NJ_T0051452.1 MGP_C57BL6NJ_G0025231.1 mouse_genomes_project 19 6291028 6295079 + MGP_C57BL6NJ_P0051452 Ubxn1 protein_coding protein_coding MGP_C57BL6NJ_T0051453.1 MGP_C57BL6NJ_G0025231.1 mouse_genomes_project 19 6291112 6295087 + MGP_C57BL6NJ_P0051453 Ubxn1 protein_coding protein_coding MGP_C57BL6NJ_T0052678.1 MGP_C57BL6NJ_G0025688.1 mouse_genomes_project 19 59267009 59316160 + MGP_C57BL6NJ_P0052678 Trub1 protein_coding protein_coding MGP_C57BL6NJ_T0052679.1 MGP_C57BL6NJ_G0025688.1 mouse_genomes_project 19 59267009 59314161 + MGP_C57BL6NJ_P0052679 Trub1 protein_coding protein_coding MGP_C57BL6NJ_T0011737.1 MGP_C57BL6NJ_G0009822.1 mouse_genomes_project 19 15416794 15417201 - Gm27970 misc_RNA misc_RNA MGP_C57BL6NJ_T0051571.1 MGP_C57BL6NJ_G0025280.1 mouse_genomes_project 19 8677698 8683550 - Ccdc86 protein_coding processed_transcript MGP_C57BL6NJ_T0051572.1 MGP_C57BL6NJ_G0025280.1 mouse_genomes_project 19 8677698 8685484 - MGP_C57BL6NJ_P0051572 Ccdc86 protein_coding protein_coding MGP_C57BL6NJ_T0051573.1 MGP_C57BL6NJ_G0025280.1 mouse_genomes_project 19 8681724 8685469 - Ccdc86 protein_coding retained_intron MGP_C57BL6NJ_T0052148.1 MGP_C57BL6NJ_G0025521.1 mouse_genomes_project 19 40025706 40085790 - MGP_C57BL6NJ_P0052148 protein_coding protein_coding MGP_C57BL6NJ_T0051713.1 MGP_C57BL6NJ_G0025353.1 mouse_genomes_project 19 11297917 11298850 + MGP_C57BL6NJ_P0051713 Olfr1463 protein_coding protein_coding MGP_C57BL6NJ_T0051839.1 MGP_C57BL6NJ_G0025418.1 mouse_genomes_project 19 24243105 24454077 + MGP_C57BL6NJ_P0051839 Kank1 protein_coding protein_coding MGP_C57BL6NJ_T0051840.1 MGP_C57BL6NJ_G0025418.1 mouse_genomes_project 19 24412252 24429534 + Kank1 protein_coding processed_transcript MGP_C57BL6NJ_T0051841.1 MGP_C57BL6NJ_G0025418.1 mouse_genomes_project 19 24426466 24445577 + MGP_C57BL6NJ_P0051841 Kank1 protein_coding protein_coding MGP_C57BL6NJ_T0051842.1 MGP_C57BL6NJ_G0025418.1 mouse_genomes_project 19 24441839 24444101 + Kank1 protein_coding retained_intron MGP_C57BL6NJ_T0051711.1 MGP_C57BL6NJ_G0025351.1 mouse_genomes_project 19 11226860 11227799 + MGP_C57BL6NJ_P0051711 Olfr1461 protein_coding protein_coding MGP_C57BL6NJ_T0052342.1 MGP_C57BL6NJ_G0025585.1 mouse_genomes_project 19 45071577 45094729 + MGP_C57BL6NJ_P0052342 Wnt8b protein_coding protein_coding MGP_C57BL6NJ_T0051709.1 MGP_C57BL6NJ_G0025349.1 mouse_genomes_project 19 11168520 11169474 - MGP_C57BL6NJ_P0051709 Olfr1457 protein_coding protein_coding MGP_C57BL6NJ_T0051966.1 MGP_C57BL6NJ_G0025451.1 mouse_genomes_project 19 29879703 29883506 - MGP_C57BL6NJ_P0051966 Dkk1 protein_coding protein_coding MGP_C57BL6NJ_T0052324.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44589895 44626129 - MGP_C57BL6NJ_P0052324 Chuk protein_coding protein_coding MGP_C57BL6NJ_T0052325.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44589896 44626126 - MGP_C57BL6NJ_P0052325 Chuk protein_coding protein_coding MGP_C57BL6NJ_T0052326.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44590933 44592465 - Chuk protein_coding retained_intron MGP_C57BL6NJ_T0052327.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44595187 44602322 - Chuk protein_coding retained_intron MGP_C57BL6NJ_T0052328.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44596232 44597225 - Chuk protein_coding retained_intron MGP_C57BL6NJ_T0052329.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44599357 44626118 - Chuk protein_coding retained_intron MGP_C57BL6NJ_T0052330.1 MGP_C57BL6NJ_G0025577.1 mouse_genomes_project 19 44614947 44625931 - Chuk protein_coding retained_intron MGP_C57BL6NJ_T0052713.1 MGP_C57BL6NJ_G0025706.1 mouse_genomes_project 19 62506643 62508215 - MGP_C57BL6NJ_P0052713 Prlhr protein_coding protein_coding MGP_C57BL6NJ_T0052304.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44275720 44337063 + MGP_C57BL6NJ_P0052304 Abcc2 protein_coding protein_coding MGP_C57BL6NJ_T0052305.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44275854 44278172 + Abcc2 protein_coding retained_intron MGP_C57BL6NJ_T0052306.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44275932 44333912 + MGP_C57BL6NJ_P0052306 Abcc2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052307.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44292763 44295547 + Abcc2 protein_coding retained_intron MGP_C57BL6NJ_T0052308.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44306981 44309861 + Abcc2 protein_coding retained_intron MGP_C57BL6NJ_T0052309.1 MGP_C57BL6NJ_G0025572.1 mouse_genomes_project 19 44335125 44337051 + MGP_C57BL6NJ_P0052309 Abcc2 protein_coding protein_coding MGP_C57BL6NJ_T0100146.1 MGP_C57BL6NJ_G0038192.1 mouse_genomes_project 19 238845 238950 + Gm23940 snRNA snRNA MGP_C57BL6NJ_T0051539.1 MGP_C57BL6NJ_G0025271.1 mouse_genomes_project 19 8419677 8431036 + MGP_C57BL6NJ_P0051539 Vps37c protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051375.1 MGP_C57BL6NJ_G0025213.1 mouse_genomes_project 19 5355834 5460899 - MGP_C57BL6NJ_P0051375 Slc22a28 protein_coding protein_coding MGP_C57BL6NJ_T0051670.1 MGP_C57BL6NJ_G0025325.1 mouse_genomes_project 19 10304932 10306157 - MGP_C57BL6NJ_P0051670 Olfr1436 protein_coding protein_coding MGP_C57BL6NJ_T0052341.1 MGP_C57BL6NJ_G0025584.1 mouse_genomes_project 19 44956722 44969981 - MGP_C57BL6NJ_P0052341 Scd1 protein_coding protein_coding MGP_C57BL6NJ_T0052149.1 MGP_C57BL6NJ_G0025522.1 mouse_genomes_project 19 40217386 40241338 + MGP_C57BL6NJ_P0052149 Cyp2c37 protein_coding protein_coding MGP_C57BL6NJ_T0051100.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3149368 3156174 - MGP_C57BL6NJ_P0051100 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051101.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3149368 3156213 - MGP_C57BL6NJ_P0051101 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051102.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3149369 3156213 - MGP_C57BL6NJ_P0051102 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051103.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3149448 3156174 - MGP_C57BL6NJ_P0051103 Tm7sf2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051104.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3149525 3156179 - MGP_C57BL6NJ_P0051104 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051105.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3150369 3156156 - MGP_C57BL6NJ_P0051105 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051106.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3150640 3156179 - MGP_C57BL6NJ_P0051106 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051107.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3153897 3156147 - Tm7sf2 protein_coding retained_intron MGP_C57BL6NJ_T0051108.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3154499 3156221 - Tm7sf2 protein_coding retained_intron MGP_C57BL6NJ_T0051109.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3154516 3156238 - Tm7sf2 protein_coding retained_intron MGP_C57BL6NJ_T0051110.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3154555 3155463 - Tm7sf2 protein_coding retained_intron MGP_C57BL6NJ_T0051111.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3154557 3156226 - MGP_C57BL6NJ_P0051111 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051112.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3154949 3155932 - Tm7sf2 protein_coding retained_intron MGP_C57BL6NJ_T0051113.1 MGP_C57BL6NJ_G0025154.1 mouse_genomes_project 19 3155533 3156744 - MGP_C57BL6NJ_P0051113 Tm7sf2 protein_coding protein_coding MGP_C57BL6NJ_T0051838.1 MGP_C57BL6NJ_G0025417.1 mouse_genomes_project 19 23974212 24197974 + MGP_C57BL6NJ_P0051838 Dock8 protein_coding protein_coding MGP_C57BL6NJ_T0052046.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465709 36537045 + MGP_C57BL6NJ_P0052046 Hectd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052047.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465734 36536155 + MGP_C57BL6NJ_P0052047 Hectd2 protein_coding protein_coding MGP_C57BL6NJ_T0052048.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465735 36506028 + Hectd2 protein_coding retained_intron MGP_C57BL6NJ_T0052049.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465735 36537048 + MGP_C57BL6NJ_P0052049 Hectd2 protein_coding protein_coding MGP_C57BL6NJ_T0052050.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465744 36512314 + Hectd2 protein_coding retained_intron MGP_C57BL6NJ_T0052051.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465901 36481961 + Hectd2 protein_coding retained_intron MGP_C57BL6NJ_T0052052.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36465932 36534757 + MGP_C57BL6NJ_P0052052 Hectd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052053.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36500369 36534757 + MGP_C57BL6NJ_P0052053 Hectd2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052054.1 MGP_C57BL6NJ_G0025487.1 mouse_genomes_project 19 36520099 36527331 + Hectd2 protein_coding retained_intron MGP_C57BL6NJ_T0050773.1 MGP_C57BL6NJ_G0025047.1 mouse_genomes_project 19 749941 764139 + MGP_C57BL6NJ_P0050773 Unc93b1 protein_coding protein_coding MGP_C57BL6NJ_T0050774.1 MGP_C57BL6NJ_G0025047.1 mouse_genomes_project 19 749981 751498 + Unc93b1 protein_coding retained_intron MGP_C57BL6NJ_T0050775.1 MGP_C57BL6NJ_G0025047.1 mouse_genomes_project 19 750012 764142 + MGP_C57BL6NJ_P0050775 Unc93b1 protein_coding protein_coding MGP_C57BL6NJ_T0050776.1 MGP_C57BL6NJ_G0025047.1 mouse_genomes_project 19 757239 764139 + Unc93b1 protein_coding retained_intron MGP_C57BL6NJ_T0052591.1 MGP_C57BL6NJ_G0025671.1 mouse_genomes_project 19 56888768 56933540 + MGP_C57BL6NJ_P0052591 Acsl5 protein_coding protein_coding MGP_C57BL6NJ_T0052541.1 MGP_C57BL6NJ_G0025651.1 mouse_genomes_project 19 48924595 49030300 + MGP_C57BL6NJ_P0052541 Cfap58 protein_coding protein_coding MGP_C57BL6NJ_T0052621.1 MGP_C57BL6NJ_G0025676.1 mouse_genomes_project 19 58023059 58100855 - MGP_C57BL6NJ_P0052621 Nrap protein_coding protein_coding MGP_C57BL6NJ_T0052622.1 MGP_C57BL6NJ_G0025676.1 mouse_genomes_project 19 58023125 58100879 - MGP_C57BL6NJ_P0052622 Nrap protein_coding protein_coding MGP_C57BL6NJ_T0052623.1 MGP_C57BL6NJ_G0025676.1 mouse_genomes_project 19 58023216 58087228 - MGP_C57BL6NJ_P0052623 Nrap protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052624.1 MGP_C57BL6NJ_G0025676.1 mouse_genomes_project 19 58023219 58100721 - MGP_C57BL6NJ_P0052624 Nrap protein_coding protein_coding MGP_C57BL6NJ_T0052625.1 MGP_C57BL6NJ_G0025676.1 mouse_genomes_project 19 58023219 58100721 - MGP_C57BL6NJ_P0052625 Nrap protein_coding protein_coding MGP_C57BL6NJ_T0013712.1 MGP_C57BL6NJ_G0011757.1 mouse_genomes_project 19 27990233 27991030 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052284.1 MGP_C57BL6NJ_G0025564.1 mouse_genomes_project 19 43219355 43847104 - MGP_C57BL6NJ_P0052284 Hpse2 protein_coding protein_coding MGP_C57BL6NJ_T0051688.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726217 10750295 + MGP_C57BL6NJ_P0051688 Keg1 protein_coding protein_coding MGP_C57BL6NJ_T0051689.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726218 10746440 + Keg1 protein_coding processed_transcript MGP_C57BL6NJ_T0051690.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726224 10748957 + Keg1 protein_coding retained_intron MGP_C57BL6NJ_T0051691.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726224 10749400 + MGP_C57BL6NJ_P0051691 Keg1 protein_coding protein_coding MGP_C57BL6NJ_T0051692.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726235 10745224 + Keg1 protein_coding retained_intron MGP_C57BL6NJ_T0051693.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726245 10745146 + Keg1 protein_coding retained_intron MGP_C57BL6NJ_T0051694.1 MGP_C57BL6NJ_G0025336.1 mouse_genomes_project 19 10726245 10749510 + MGP_C57BL6NJ_P0051694 Keg1 protein_coding protein_coding MGP_C57BL6NJ_T0013709.1 MGP_C57BL6NJ_G0011754.1 mouse_genomes_project 19 26979667 26980107 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052035.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35816504 35919339 - MGP_C57BL6NJ_P0052035 Htr7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052036.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35816504 35919339 - MGP_C57BL6NJ_P0052036 Htr7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052037.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35816504 35919319 - MGP_C57BL6NJ_P0052037 Htr7 protein_coding protein_coding MGP_C57BL6NJ_T0052038.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35816515 35919347 - MGP_C57BL6NJ_P0052038 Htr7 protein_coding protein_coding MGP_C57BL6NJ_T0052039.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35817590 35919486 - MGP_C57BL6NJ_P0052039 Htr7 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052040.1 MGP_C57BL6NJ_G0025483.1 mouse_genomes_project 19 35818085 35919352 - MGP_C57BL6NJ_P0052040 Htr7 protein_coding protein_coding MGP_C57BL6NJ_T0010541.1 MGP_C57BL6NJ_G0008626.1 mouse_genomes_project 19 44845576 44845637 + Mir5114 miRNA miRNA MGP_C57BL6NJ_T0052338.1 MGP_C57BL6NJ_G0025583.1 mouse_genomes_project 19 44882794 44884426 + Scd4 protein_coding retained_intron MGP_C57BL6NJ_T0052339.1 MGP_C57BL6NJ_G0025583.1 mouse_genomes_project 19 44882794 44897823 + MGP_C57BL6NJ_P0052339 Scd4 protein_coding protein_coding MGP_C57BL6NJ_T0052340.1 MGP_C57BL6NJ_G0025583.1 mouse_genomes_project 19 44883726 44896065 + MGP_C57BL6NJ_P0052340 Scd4 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052485.1 MGP_C57BL6NJ_G0025629.1 mouse_genomes_project 19 47554791 47569552 + MGP_C57BL6NJ_P0052485 Borcs7 protein_coding protein_coding MGP_C57BL6NJ_T0051083.1 MGP_C57BL6NJ_G0025147.1 mouse_genomes_project 19 3018051 3042408 - MGP_C57BL6NJ_P0051083 Pola2 protein_coding protein_coding MGP_C57BL6NJ_T0051084.1 MGP_C57BL6NJ_G0025147.1 mouse_genomes_project 19 3018612 3042408 - MGP_C57BL6NJ_P0051084 Pola2 protein_coding protein_coding MGP_C57BL6NJ_T0007233.1 MGP_C57BL6NJ_G0005940.1 mouse_genomes_project 19 3820306 3821792 + Gm14968 lincRNA lincRNA MGP_C57BL6NJ_T0001147.1 MGP_C57BL6NJ_G0001053.1 mouse_genomes_project 19 1707215 1710284 - TEC TEC MGP_C57BL6NJ_T0051877.1 MGP_C57BL6NJ_G0025425.1 mouse_genomes_project 19 26425661 26441493 + MGP_C57BL6NJ_P0051877 Kcnv2 protein_coding protein_coding MGP_C57BL6NJ_T0051516.1 MGP_C57BL6NJ_G0025258.1 mouse_genomes_project 19 7923488 7984744 - MGP_C57BL6NJ_P0051516 Dagla protein_coding protein_coding MGP_C57BL6NJ_T0051517.1 MGP_C57BL6NJ_G0025258.1 mouse_genomes_project 19 7923491 7984724 - MGP_C57BL6NJ_P0051517 Dagla protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051518.1 MGP_C57BL6NJ_G0025258.1 mouse_genomes_project 19 7931553 7935054 - Dagla protein_coding processed_transcript MGP_C57BL6NJ_T0052691.1 MGP_C57BL6NJ_G0025692.1 mouse_genomes_project 19 60580971 60596597 + MGP_C57BL6NJ_P0052691 Pnlip protein_coding protein_coding MGP_C57BL6NJ_T0052548.1 MGP_C57BL6NJ_G0025655.1 mouse_genomes_project 19 53601833 53602967 + MGP_C57BL6NJ_P0052548 Ins1 protein_coding protein_coding MGP_C57BL6NJ_T0011736.1 MGP_C57BL6NJ_G0009821.1 mouse_genomes_project 19 6061715 6062044 - Gm22820 misc_RNA misc_RNA MGP_C57BL6NJ_T0051468.1 MGP_C57BL6NJ_G0025237.1 mouse_genomes_project 19 6343914 6350469 + MGP_C57BL6NJ_P0051468 B3gat3 protein_coding protein_coding MGP_C57BL6NJ_T0050727.1 MGP_C57BL6NJ_G0025041.1 mouse_genomes_project 19 482345 491894 + MGP_C57BL6NJ_P0050727 1810055G02Rik protein_coding protein_coding MGP_C57BL6NJ_T0051500.1 MGP_C57BL6NJ_G0025253.1 mouse_genomes_project 19 7705747 7742931 - MGP_C57BL6NJ_P0051500 Fads2 protein_coding protein_coding MGP_C57BL6NJ_T0051935.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28852255 28894333 - MGP_C57BL6NJ_P0051935 Ermp1 protein_coding protein_coding MGP_C57BL6NJ_T0051936.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28852259 28856265 - Ermp1 protein_coding processed_transcript MGP_C57BL6NJ_T0051937.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28854231 28894105 - MGP_C57BL6NJ_P0051937 Ermp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051938.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28856436 28890748 - MGP_C57BL6NJ_P0051938 Ermp1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051939.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28856651 28857254 - Ermp1 protein_coding retained_intron MGP_C57BL6NJ_T0051940.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28871058 28884411 - Ermp1 protein_coding processed_transcript MGP_C57BL6NJ_T0051941.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28872008 28894308 - Ermp1 protein_coding retained_intron MGP_C57BL6NJ_T0051942.1 MGP_C57BL6NJ_G0025442.1 mouse_genomes_project 19 28889430 28894296 - Ermp1 protein_coding retained_intron MGP_C57BL6NJ_T0051663.1 MGP_C57BL6NJ_G0025318.1 mouse_genomes_project 19 10050958 10057635 - MGP_C57BL6NJ_P0051663 Olfr1426 protein_coding protein_coding MGP_C57BL6NJ_T0052314.1 MGP_C57BL6NJ_G0025575.1 mouse_genomes_project 19 44510626 44543845 - MGP_C57BL6NJ_P0052314 Cyp2c44 protein_coding protein_coding MGP_C57BL6NJ_T0052127.1 MGP_C57BL6NJ_G0025510.1 mouse_genomes_project 19 38999730 39087841 + MGP_C57BL6NJ_P0052127 Tbc1d12 protein_coding protein_coding MGP_C57BL6NJ_T0052135.1 MGP_C57BL6NJ_G0025513.1 mouse_genomes_project 19 39235767 39271708 + MGP_C57BL6NJ_P0052135 Cyp2c65 protein_coding protein_coding MGP_C57BL6NJ_T0007256.1 MGP_C57BL6NJ_G0005957.1 mouse_genomes_project 19 34168440 34170251 + Gm26902 lincRNA lincRNA MGP_C57BL6NJ_T0007257.1 MGP_C57BL6NJ_G0005957.1 mouse_genomes_project 19 34168465 34175516 + Gm26902 lincRNA lincRNA MGP_C57BL6NJ_T0051878.1 MGP_C57BL6NJ_G0025426.1 mouse_genomes_project 19 26497489 26533788 - MGP_C57BL6NJ_P0051878 Pum3 protein_coding protein_coding MGP_C57BL6NJ_T0102453.1 MGP_C57BL6NJ_G0040347.1 mouse_genomes_project 19 39402842 39436358 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0102454.1 MGP_C57BL6NJ_G0040347.1 mouse_genomes_project 19 39402872 39436315 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_C57BL6NJ_T0102455.1 MGP_C57BL6NJ_G0040347.1 mouse_genomes_project 19 39433080 39436606 + transcribed_unprocessed_pseudogene processed_transcript MGP_C57BL6NJ_T0010545.1 MGP_C57BL6NJ_G0008630.1 mouse_genomes_project 19 48715278 48715414 - Mir8090 miRNA miRNA MGP_C57BL6NJ_T0052726.1 MGP_C57BL6NJ_G0025711.1 mouse_genomes_project 19 62900841 62928141 - MGP_C57BL6NJ_P0052726 Sfxn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052727.1 MGP_C57BL6NJ_G0025711.1 mouse_genomes_project 19 62902264 62928193 - MGP_C57BL6NJ_P0052727 Sfxn4 protein_coding protein_coding MGP_C57BL6NJ_T0052728.1 MGP_C57BL6NJ_G0025711.1 mouse_genomes_project 19 62902274 62928138 - MGP_C57BL6NJ_P0052728 Sfxn4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051724.1 MGP_C57BL6NJ_G0025364.1 mouse_genomes_project 19 11882253 11883342 + MGP_C57BL6NJ_P0051724 Olfr1495 protein_coding protein_coding MGP_C57BL6NJ_T0051126.1 MGP_C57BL6NJ_G0025157.1 mouse_genomes_project 19 3170082 3170835 + MGP_C57BL6NJ_P0051126 Tmem262 protein_coding protein_coding MGP_C57BL6NJ_T0051127.1 MGP_C57BL6NJ_G0025157.1 mouse_genomes_project 19 3170082 3170838 + MGP_C57BL6NJ_P0051127 Tmem262 protein_coding protein_coding MGP_C57BL6NJ_T0051671.1 MGP_C57BL6NJ_G0025326.1 mouse_genomes_project 19 10399356 10400304 + MGP_C57BL6NJ_P0051671 Olfr1440 protein_coding protein_coding MGP_C57BL6NJ_T0051478.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6392349 6408952 + MGP_C57BL6NJ_P0051478 Eef1g protein_coding protein_coding MGP_C57BL6NJ_T0051479.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6392522 6402477 + MGP_C57BL6NJ_P0051479 Eef1g protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051480.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6392878 6401953 + Eef1g protein_coding processed_transcript MGP_C57BL6NJ_T0051481.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6393524 6402005 + Eef1g protein_coding processed_transcript MGP_C57BL6NJ_T0051482.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6393524 6399570 + Eef1g protein_coding retained_intron MGP_C57BL6NJ_T0051483.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6393524 6398875 + Eef1g protein_coding retained_intron MGP_C57BL6NJ_T0051484.1 MGP_C57BL6NJ_G0025242.1 mouse_genomes_project 19 6401772 6408952 + Eef1g protein_coding retained_intron MGP_C57BL6NJ_T0052697.1 MGP_C57BL6NJ_G0025697.1 mouse_genomes_project 19 60878708 60909257 + MGP_C57BL6NJ_P0052697 Eno4 protein_coding protein_coding MGP_C57BL6NJ_T0052698.1 MGP_C57BL6NJ_G0025697.1 mouse_genomes_project 19 60878708 60909255 + MGP_C57BL6NJ_P0052698 Eno4 protein_coding protein_coding MGP_C57BL6NJ_T0052699.1 MGP_C57BL6NJ_G0025697.1 mouse_genomes_project 19 60889683 60909253 + MGP_C57BL6NJ_P0052699 Eno4 protein_coding protein_coding MGP_C57BL6NJ_T0052700.1 MGP_C57BL6NJ_G0025697.1 mouse_genomes_project 19 60891961 60908769 + MGP_C57BL6NJ_P0052700 Eno4 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0100159.1 MGP_C57BL6NJ_G0038205.1 mouse_genomes_project 19 36269611 36269717 - Gm23170 snRNA snRNA MGP_C57BL6NJ_T0050983.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443125 2445039 - MGP_C57BL6NJ_P0050983 Drap1 protein_coding protein_coding MGP_C57BL6NJ_T0050984.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443130 2444248 - Drap1 protein_coding retained_intron MGP_C57BL6NJ_T0050985.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443134 2444545 - Drap1 protein_coding retained_intron MGP_C57BL6NJ_T0050986.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443151 2445112 - Drap1 protein_coding retained_intron MGP_C57BL6NJ_T0050987.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443151 2445125 - MGP_C57BL6NJ_P0050987 Drap1 protein_coding protein_coding MGP_C57BL6NJ_T0050988.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443185 2444406 - Drap1 protein_coding retained_intron MGP_C57BL6NJ_T0050989.1 MGP_C57BL6NJ_G0025117.1 mouse_genomes_project 19 2443931 2445104 - Drap1 protein_coding retained_intron MGP_C57BL6NJ_T0051011.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2509684 2515356 - MGP_C57BL6NJ_P0051011 Mus81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051012.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510171 2515742 - MGP_C57BL6NJ_P0051012 Mus81 protein_coding protein_coding MGP_C57BL6NJ_T0051013.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510179 2510913 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0051014.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510190 2515275 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0051015.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510192 2511303 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0051016.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510193 2511307 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0051017.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2510197 2515625 - MGP_C57BL6NJ_P0051017 Mus81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051018.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2511029 2512225 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0051019.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2511551 2513150 - Mus81 protein_coding processed_transcript MGP_C57BL6NJ_T0051020.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2512827 2515606 - MGP_C57BL6NJ_P0051020 Mus81 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051021.1 MGP_C57BL6NJ_G0025124.1 mouse_genomes_project 19 2514807 2515651 - Mus81 protein_coding retained_intron MGP_C57BL6NJ_T0052434.1 MGP_C57BL6NJ_G0025614.1 mouse_genomes_project 19 46938279 46941688 + MGP_C57BL6NJ_P0052434 Elovl3 protein_coding protein_coding MGP_C57BL6NJ_T0051470.1 MGP_C57BL6NJ_G0025239.1 mouse_genomes_project 19 6352928 6365139 + MGP_C57BL6NJ_P0051470 Eml3 protein_coding protein_coding MGP_C57BL6NJ_T0018176.1 MGP_C57BL6NJ_G0015778.1 mouse_genomes_project 19 25833748 25893231 - 4931403E22Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0011743.1 MGP_C57BL6NJ_G0009828.1 mouse_genomes_project 19 33977778 33977937 + Gm27818 misc_RNA misc_RNA MGP_C57BL6NJ_T0052274.1 MGP_C57BL6NJ_G0025562.1 mouse_genomes_project 19 43154331 43181246 - MGP_C57BL6NJ_P0052274 Pyroxd2 protein_coding protein_coding MGP_C57BL6NJ_T0051699.1 MGP_C57BL6NJ_G0025339.1 mouse_genomes_project 19 10836231 10872136 + MGP_C57BL6NJ_P0051699 Lpxn protein_coding protein_coding MGP_C57BL6NJ_T0011732.1 MGP_C57BL6NJ_G0009817.1 mouse_genomes_project 19 2863615 2863701 - Gm27694 misc_RNA misc_RNA MGP_C57BL6NJ_T0052202.1 MGP_C57BL6NJ_G0025538.1 mouse_genomes_project 19 41836377 41920270 + MGP_C57BL6NJ_P0052202 Lcor protein_coding protein_coding MGP_C57BL6NJ_T0052203.1 MGP_C57BL6NJ_G0025538.1 mouse_genomes_project 19 41907662 41917805 + MGP_C57BL6NJ_P0052203 Lcor protein_coding protein_coding MGP_C57BL6NJ_T0051316.1 MGP_C57BL6NJ_G0025198.1 mouse_genomes_project 19 4402230 4410164 - MGP_C57BL6NJ_P0051316 Otub1 protein_coding protein_coding MGP_C57BL6NJ_T0051317.1 MGP_C57BL6NJ_G0025198.1 mouse_genomes_project 19 4402238 4410082 - MGP_C57BL6NJ_P0051317 Otub1 protein_coding protein_coding MGP_C57BL6NJ_T0051318.1 MGP_C57BL6NJ_G0025198.1 mouse_genomes_project 19 4403573 4404498 - Otub1 protein_coding retained_intron MGP_C57BL6NJ_T0051319.1 MGP_C57BL6NJ_G0025198.1 mouse_genomes_project 19 4403744 4409623 - MGP_C57BL6NJ_P0051319 Otub1 protein_coding protein_coding MGP_C57BL6NJ_T0051320.1 MGP_C57BL6NJ_G0025198.1 mouse_genomes_project 19 4403774 4408267 - Otub1 protein_coding retained_intron MGP_C57BL6NJ_T0052534.1 MGP_C57BL6NJ_G0025649.1 mouse_genomes_project 19 48832590 48843212 + MGP_C57BL6NJ_P0052534 Gsto1 protein_coding protein_coding MGP_C57BL6NJ_T0052535.1 MGP_C57BL6NJ_G0025649.1 mouse_genomes_project 19 48832703 48833346 + Gsto1 protein_coding retained_intron MGP_C57BL6NJ_T0052536.1 MGP_C57BL6NJ_G0025649.1 mouse_genomes_project 19 48841416 48842989 + Gsto1 protein_coding retained_intron MGP_C57BL6NJ_T0051664.1 MGP_C57BL6NJ_G0025319.1 mouse_genomes_project 19 10065354 10066292 - MGP_C57BL6NJ_P0051664 Olfr1427 protein_coding protein_coding MGP_C57BL6NJ_T0010500.1 MGP_C57BL6NJ_G0008585.1 mouse_genomes_project 19 31003 31067 + Mir6984 miRNA miRNA MGP_C57BL6NJ_T0051552.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8598230 8610728 - MGP_C57BL6NJ_P0051552 Tmem109 protein_coding protein_coding MGP_C57BL6NJ_T0051553.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8599421 8607942 - MGP_C57BL6NJ_P0051553 Tmem109 protein_coding protein_coding MGP_C57BL6NJ_T0051554.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8599705 8602309 - Tmem109 protein_coding retained_intron MGP_C57BL6NJ_T0051555.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8599760 8610728 - MGP_C57BL6NJ_P0051555 Tmem109 protein_coding protein_coding MGP_C57BL6NJ_T0051556.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8601499 8610438 - Tmem109 protein_coding retained_intron MGP_C57BL6NJ_T0051557.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8601813 8610458 - MGP_C57BL6NJ_P0051557 Tmem109 protein_coding protein_coding MGP_C57BL6NJ_T0051558.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8601831 8610425 - MGP_C57BL6NJ_P0051558 Tmem109 protein_coding protein_coding MGP_C57BL6NJ_T0051559.1 MGP_C57BL6NJ_G0025276.1 mouse_genomes_project 19 8608073 8610425 - Tmem109 protein_coding processed_transcript MGP_C57BL6NJ_T0052386.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314146 46401982 - MGP_C57BL6NJ_P0052386 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0052388.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314511 46331010 - MGP_C57BL6NJ_P0052388 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0052389.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314692 46329385 - MGP_C57BL6NJ_P0052389 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0052390.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314694 46315788 - Fbxw4 protein_coding retained_intron MGP_C57BL6NJ_T0052391.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314738 46329385 - MGP_C57BL6NJ_P0052391 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0052392.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46314809 46330204 - MGP_C57BL6NJ_P0052392 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0052393.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46315659 46372341 - Fbxw4 protein_coding retained_intron MGP_C57BL6NJ_T0052394.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46329003 46372341 - Fbxw4 protein_coding retained_intron MGP_C57BL6NJ_T0052395.1 MGP_C57BL6NJ_G0025604.1 mouse_genomes_project 19 46372076 46383201 - MGP_C57BL6NJ_P0052395 Fbxw4 protein_coding protein_coding MGP_C57BL6NJ_T0101460.1 MGP_C57BL6NJ_G0039506.1 mouse_genomes_project 19 62831444 62831563 - Gm26158 snoRNA snoRNA MGP_C57BL6NJ_T0051299.1 MGP_C57BL6NJ_G0025188.1 mouse_genomes_project 19 4162138 4166219 + MGP_C57BL6NJ_P0051299 Ppp1r14b protein_coding protein_coding MGP_C57BL6NJ_T0051300.1 MGP_C57BL6NJ_G0025188.1 mouse_genomes_project 19 4162339 4164141 + MGP_C57BL6NJ_P0051300 Ppp1r14b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051315.1 MGP_C57BL6NJ_G0025197.1 mouse_genomes_project 19 4293381 4307078 - MGP_C57BL6NJ_P0051315 Flrt1 protein_coding protein_coding MGP_C57BL6NJ_T0052537.1 MGP_C57BL6NJ_G0025650.1 mouse_genomes_project 19 48843966 48867697 + MGP_C57BL6NJ_P0052537 Gsto2 protein_coding protein_coding MGP_C57BL6NJ_T0052538.1 MGP_C57BL6NJ_G0025650.1 mouse_genomes_project 19 48844188 48867697 + MGP_C57BL6NJ_P0052538 Gsto2 protein_coding protein_coding MGP_C57BL6NJ_T0052539.1 MGP_C57BL6NJ_G0025650.1 mouse_genomes_project 19 48848683 48866078 + MGP_C57BL6NJ_P0052539 Gsto2 protein_coding protein_coding MGP_C57BL6NJ_T0101436.1 MGP_C57BL6NJ_G0039482.1 mouse_genomes_project 19 6113817 6113882 + Gm22744 snoRNA snoRNA MGP_C57BL6NJ_T0051661.1 MGP_C57BL6NJ_G0025316.1 mouse_genomes_project 19 9978354 9981808 - MGP_C57BL6NJ_P0051661 protein_coding protein_coding MGP_C57BL6NJ_T0052505.1 MGP_C57BL6NJ_G0025643.1 mouse_genomes_project 19 48192795 48409718 - MGP_C57BL6NJ_P0052505 Sh3pxd2a protein_coding protein_coding MGP_C57BL6NJ_T0052506.1 MGP_C57BL6NJ_G0025643.1 mouse_genomes_project 19 48192795 48409718 - MGP_C57BL6NJ_P0052506 Sh3pxd2a protein_coding protein_coding MGP_C57BL6NJ_T0101441.1 MGP_C57BL6NJ_G0039487.1 mouse_genomes_project 19 9442519 9442569 - Gm24599 snoRNA snoRNA MGP_C57BL6NJ_T0007258.1 MGP_C57BL6NJ_G0005958.1 mouse_genomes_project 19 34846101 34850145 - Gm5248 lincRNA lincRNA MGP_C57BL6NJ_T0051725.1 MGP_C57BL6NJ_G0025365.1 mouse_genomes_project 19 11888017 11889084 + MGP_C57BL6NJ_P0051725 Olfr1496 protein_coding protein_coding MGP_C57BL6NJ_T0051868.1 MGP_C57BL6NJ_G0025423.1 mouse_genomes_project 19 25957862 25960575 + MGP_C57BL6NJ_P0051868 Gm815 protein_coding protein_coding MGP_C57BL6NJ_T0051322.1 MGP_C57BL6NJ_G0025200.1 mouse_genomes_project 19 4432254 4447665 - MGP_C57BL6NJ_P0051322 Naa40 protein_coding protein_coding MGP_C57BL6NJ_T0052705.1 MGP_C57BL6NJ_G0025701.1 mouse_genomes_project 19 61215957 61251018 + MGP_C57BL6NJ_P0052705 Slc18a2 protein_coding protein_coding MGP_C57BL6NJ_T0052614.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 57985204 58023114 + MGP_C57BL6NJ_P0052614 Habp2 protein_coding protein_coding MGP_C57BL6NJ_T0052615.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 57985981 58023847 + MGP_C57BL6NJ_P0052615 Habp2 protein_coding protein_coding MGP_C57BL6NJ_T0052616.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 57985995 58012743 + Habp2 protein_coding processed_transcript MGP_C57BL6NJ_T0052617.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 57986055 58019320 + MGP_C57BL6NJ_P0052617 Habp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052618.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 57986055 58022660 + MGP_C57BL6NJ_P0052618 Habp2 protein_coding protein_coding MGP_C57BL6NJ_T0052619.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 58012568 58019442 + MGP_C57BL6NJ_P0052619 Habp2 protein_coding protein_coding MGP_C57BL6NJ_T0052620.1 MGP_C57BL6NJ_G0025675.1 mouse_genomes_project 19 58013702 58022654 + MGP_C57BL6NJ_P0052620 Habp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052381.1 MGP_C57BL6NJ_G0025601.1 mouse_genomes_project 19 46090452 46268501 + MGP_C57BL6NJ_P0052381 Btrc protein_coding protein_coding MGP_C57BL6NJ_T0052382.1 MGP_C57BL6NJ_G0025601.1 mouse_genomes_project 19 46090452 46268501 + MGP_C57BL6NJ_P0052382 Btrc protein_coding protein_coding MGP_C57BL6NJ_T0052383.1 MGP_C57BL6NJ_G0025601.1 mouse_genomes_project 19 46090557 46267198 + MGP_C57BL6NJ_P0052383 Btrc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0099254.1 MGP_C57BL6NJ_G0037318.1 mouse_genomes_project 19 9529166 9529305 + Gm26183 scaRNA scaRNA MGP_C57BL6NJ_T0050809.1 MGP_C57BL6NJ_G0025059.1 mouse_genomes_project 19 965197 966816 + Cdk2ap2 protein_coding retained_intron MGP_C57BL6NJ_T0050810.1 MGP_C57BL6NJ_G0025059.1 mouse_genomes_project 19 965197 966262 + MGP_C57BL6NJ_P0050810 Cdk2ap2 protein_coding protein_coding MGP_C57BL6NJ_T0050811.1 MGP_C57BL6NJ_G0025059.1 mouse_genomes_project 19 965198 966807 + MGP_C57BL6NJ_P0050811 Cdk2ap2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050812.1 MGP_C57BL6NJ_G0025059.1 mouse_genomes_project 19 965222 966814 + MGP_C57BL6NJ_P0050812 Cdk2ap2 protein_coding protein_coding MGP_C57BL6NJ_T0052033.1 MGP_C57BL6NJ_G0025482.1 mouse_genomes_project 19 34704109 34762321 + MGP_C57BL6NJ_P0052033 Kif20b protein_coding protein_coding MGP_C57BL6NJ_T0052034.1 MGP_C57BL6NJ_G0025482.1 mouse_genomes_project 19 34704290 34762160 + MGP_C57BL6NJ_P0052034 Kif20b protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051606.1 MGP_C57BL6NJ_G0025293.1 mouse_genomes_project 19 9155878 9175282 + MGP_C57BL6NJ_P0051606 Ms4a4a protein_coding protein_coding MGP_C57BL6NJ_T0007254.1 MGP_C57BL6NJ_G0005955.1 mouse_genomes_project 19 31877962 31879931 + 2700046G09Rik lincRNA lincRNA MGP_C57BL6NJ_T0051277.1 MGP_C57BL6NJ_G0025181.1 mouse_genomes_project 19 4086504 4088051 + MGP_C57BL6NJ_P0051277 Trmt112 protein_coding protein_coding MGP_C57BL6NJ_T0051278.1 MGP_C57BL6NJ_G0025181.1 mouse_genomes_project 19 4086553 4088030 + MGP_C57BL6NJ_P0051278 Trmt112 protein_coding protein_coding MGP_C57BL6NJ_T0051279.1 MGP_C57BL6NJ_G0025181.1 mouse_genomes_project 19 4086959 4087801 + Trmt112 protein_coding retained_intron MGP_C57BL6NJ_T0051280.1 MGP_C57BL6NJ_G0025181.1 mouse_genomes_project 19 4086970 4088030 + MGP_C57BL6NJ_P0051280 Trmt112 protein_coding protein_coding MGP_C57BL6NJ_T0051065.1 MGP_C57BL6NJ_G0025142.1 mouse_genomes_project 19 2915524 2940606 - MGP_C57BL6NJ_P0051065 Frmd8 protein_coding protein_coding MGP_C57BL6NJ_T0051066.1 MGP_C57BL6NJ_G0025142.1 mouse_genomes_project 19 2927447 2929014 - Frmd8 protein_coding retained_intron MGP_C57BL6NJ_T0051067.1 MGP_C57BL6NJ_G0025142.1 mouse_genomes_project 19 2930515 2938762 - Frmd8 protein_coding retained_intron MGP_C57BL6NJ_T0051068.1 MGP_C57BL6NJ_G0025142.1 mouse_genomes_project 19 2930601 2940571 - MGP_C57BL6NJ_P0051068 Frmd8 protein_coding protein_coding MGP_C57BL6NJ_T0101435.1 MGP_C57BL6NJ_G0039481.1 mouse_genomes_project 19 6113593 6113669 + Gm24453 snoRNA snoRNA MGP_C57BL6NJ_T0010543.1 MGP_C57BL6NJ_G0008628.1 mouse_genomes_project 19 47175001 47175110 + Mir146b miRNA miRNA MGP_C57BL6NJ_T0051666.1 MGP_C57BL6NJ_G0025321.1 mouse_genomes_project 19 10086041 10087089 - MGP_C57BL6NJ_P0051666 Olfr76 protein_coding protein_coding MGP_C57BL6NJ_T0051768.1 MGP_C57BL6NJ_G0025386.1 mouse_genomes_project 19 17141213 17180668 + MGP_C57BL6NJ_P0051768 Carnmt1 protein_coding protein_coding MGP_C57BL6NJ_T0051769.1 MGP_C57BL6NJ_G0025386.1 mouse_genomes_project 19 17149151 17177028 + MGP_C57BL6NJ_P0051769 Carnmt1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007260.1 MGP_C57BL6NJ_G0005960.1 mouse_genomes_project 19 37168422 37192871 + A330032B11Rik lincRNA lincRNA MGP_C57BL6NJ_T0051541.1 MGP_C57BL6NJ_G0025273.1 mouse_genomes_project 19 8512775 8554862 - MGP_C57BL6NJ_P0051541 Cd6 protein_coding protein_coding MGP_C57BL6NJ_T0051542.1 MGP_C57BL6NJ_G0025273.1 mouse_genomes_project 19 8512780 8522179 - Cd6 protein_coding retained_intron MGP_C57BL6NJ_T0051543.1 MGP_C57BL6NJ_G0025273.1 mouse_genomes_project 19 8512783 8554768 - MGP_C57BL6NJ_P0051543 Cd6 protein_coding protein_coding MGP_C57BL6NJ_T0051544.1 MGP_C57BL6NJ_G0025273.1 mouse_genomes_project 19 8514420 8516423 - Cd6 protein_coding retained_intron MGP_C57BL6NJ_T0051545.1 MGP_C57BL6NJ_G0025273.1 mouse_genomes_project 19 8517998 8554660 - MGP_C57BL6NJ_P0051545 Cd6 protein_coding protein_coding MGP_C57BL6NJ_T0051288.1 MGP_C57BL6NJ_G0025185.1 mouse_genomes_project 19 4123462 4126901 - MGP_C57BL6NJ_P0051288 Gpr137 protein_coding protein_coding MGP_C57BL6NJ_T0051289.1 MGP_C57BL6NJ_G0025185.1 mouse_genomes_project 19 4123463 4127844 - MGP_C57BL6NJ_P0051289 Gpr137 protein_coding protein_coding MGP_C57BL6NJ_T0051290.1 MGP_C57BL6NJ_G0025185.1 mouse_genomes_project 19 4123463 4126587 - MGP_C57BL6NJ_P0051290 Gpr137 protein_coding protein_coding MGP_C57BL6NJ_T0051291.1 MGP_C57BL6NJ_G0025185.1 mouse_genomes_project 19 4123463 4126873 - MGP_C57BL6NJ_P0051291 Gpr137 protein_coding protein_coding MGP_C57BL6NJ_T0051292.1 MGP_C57BL6NJ_G0025185.1 mouse_genomes_project 19 4123463 4126587 - MGP_C57BL6NJ_P0051292 Gpr137 protein_coding protein_coding MGP_C57BL6NJ_T0051714.1 MGP_C57BL6NJ_G0025354.1 mouse_genomes_project 19 11387609 11388533 - MGP_C57BL6NJ_P0051714 Olfr1465 protein_coding protein_coding MGP_C57BL6NJ_T0052146.1 MGP_C57BL6NJ_G0025519.1 mouse_genomes_project 19 40025704 40085749 - MGP_C57BL6NJ_P0052146 protein_coding protein_coding MGP_C57BL6NJ_T0051534.1 MGP_C57BL6NJ_G0025267.1 mouse_genomes_project 19 8301356 8314567 - MGP_C57BL6NJ_P0051534 Tkfc protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051723.1 MGP_C57BL6NJ_G0025363.1 mouse_genomes_project 19 11861695 11862643 + MGP_C57BL6NJ_P0051723 Olfr1494 protein_coding protein_coding MGP_C57BL6NJ_T0051560.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8623959 8634261 + MGP_C57BL6NJ_P0051560 Prpf19 protein_coding protein_coding MGP_C57BL6NJ_T0051561.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8624005 8626640 + Prpf19 protein_coding retained_intron MGP_C57BL6NJ_T0051562.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8624010 8626989 + Prpf19 protein_coding retained_intron MGP_C57BL6NJ_T0051563.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8624101 8628096 + Prpf19 protein_coding retained_intron MGP_C57BL6NJ_T0051564.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8624142 8639771 + MGP_C57BL6NJ_P0051564 Prpf19 protein_coding protein_coding MGP_C57BL6NJ_T0051565.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8627373 8634235 + Prpf19 protein_coding processed_transcript MGP_C57BL6NJ_T0051566.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8628097 8631489 + Prpf19 protein_coding retained_intron MGP_C57BL6NJ_T0051567.1 MGP_C57BL6NJ_G0025277.1 mouse_genomes_project 19 8629010 8629722 + Prpf19 protein_coding retained_intron MGP_C57BL6NJ_T0052287.1 MGP_C57BL6NJ_G0025566.1 mouse_genomes_project 19 43967952 43996074 - MGP_C57BL6NJ_P0052287 Got1 protein_coding protein_coding MGP_C57BL6NJ_T0052288.1 MGP_C57BL6NJ_G0025566.1 mouse_genomes_project 19 43968221 43987634 - MGP_C57BL6NJ_P0052288 Got1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052289.1 MGP_C57BL6NJ_G0025566.1 mouse_genomes_project 19 43968515 43976565 - Got1 protein_coding retained_intron MGP_C57BL6NJ_T0052290.1 MGP_C57BL6NJ_G0025566.1 mouse_genomes_project 19 43984022 43995954 - Got1 protein_coding processed_transcript MGP_C57BL6NJ_T0013708.1 MGP_C57BL6NJ_G0011753.1 mouse_genomes_project 19 23654550 23655521 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052712.1 MGP_C57BL6NJ_G0025705.1 mouse_genomes_project 19 62225576 62255810 - MGP_C57BL6NJ_P0052712 Fam204a protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052300.1 MGP_C57BL6NJ_G0025571.1 mouse_genomes_project 19 44242184 44260577 + MGP_C57BL6NJ_P0052300 Cutc protein_coding protein_coding MGP_C57BL6NJ_T0052301.1 MGP_C57BL6NJ_G0025571.1 mouse_genomes_project 19 44242286 44260584 + MGP_C57BL6NJ_P0052301 Cutc protein_coding protein_coding MGP_C57BL6NJ_T0052302.1 MGP_C57BL6NJ_G0025571.1 mouse_genomes_project 19 44242325 44260184 + MGP_C57BL6NJ_P0052302 Cutc protein_coding protein_coding MGP_C57BL6NJ_T0052303.1 MGP_C57BL6NJ_G0025571.1 mouse_genomes_project 19 44256818 44260584 + Cutc protein_coding retained_intron MGP_C57BL6NJ_T0052141.1 MGP_C57BL6NJ_G0025516.1 mouse_genomes_project 19 39552478 39615600 - MGP_C57BL6NJ_P0052141 Cyp2c38 protein_coding protein_coding MGP_C57BL6NJ_T0052142.1 MGP_C57BL6NJ_G0025516.1 mouse_genomes_project 19 39553853 39615579 - MGP_C57BL6NJ_P0052142 Cyp2c38 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0101452.1 MGP_C57BL6NJ_G0039498.1 mouse_genomes_project 19 35608604 35608737 - Gm25611 snoRNA snoRNA MGP_C57BL6NJ_T0052067.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36983672 37204050 - MGP_C57BL6NJ_P0052067 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052068.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36983678 37168675 - MGP_C57BL6NJ_P0052068 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052069.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36984260 37170643 - MGP_C57BL6NJ_P0052069 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052070.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36984260 37204050 - MGP_C57BL6NJ_P0052070 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052071.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36985351 37204061 - MGP_C57BL6NJ_P0052071 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052072.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36986317 37203881 - MGP_C57BL6NJ_P0052072 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052073.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 36987021 37194439 - MGP_C57BL6NJ_P0052073 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052074.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 37020224 37204096 - MGP_C57BL6NJ_P0052074 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052075.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 37169016 37172660 - MGP_C57BL6NJ_P0052075 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052076.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 37169172 37170636 - MGP_C57BL6NJ_P0052076 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052077.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 37169202 37205189 - MGP_C57BL6NJ_P0052077 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0052078.1 MGP_C57BL6NJ_G0025492.1 mouse_genomes_project 19 37169267 37169796 - MGP_C57BL6NJ_P0052078 Cpeb3 protein_coding protein_coding MGP_C57BL6NJ_T0050804.1 MGP_C57BL6NJ_G0025058.1 mouse_genomes_project 19 945853 949952 + MGP_C57BL6NJ_P0050804 Cabp2 protein_coding protein_coding MGP_C57BL6NJ_T0050805.1 MGP_C57BL6NJ_G0025058.1 mouse_genomes_project 19 946733 951412 + MGP_C57BL6NJ_P0050805 Cabp2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050806.1 MGP_C57BL6NJ_G0025058.1 mouse_genomes_project 19 947765 951616 + MGP_C57BL6NJ_P0050806 Cabp2 protein_coding protein_coding MGP_C57BL6NJ_T0050807.1 MGP_C57BL6NJ_G0025058.1 mouse_genomes_project 19 947794 951616 + MGP_C57BL6NJ_P0050807 Cabp2 protein_coding protein_coding MGP_C57BL6NJ_T0050808.1 MGP_C57BL6NJ_G0025058.1 mouse_genomes_project 19 950750 951613 + Cabp2 protein_coding processed_transcript MGP_C57BL6NJ_T0101451.1 MGP_C57BL6NJ_G0039497.1 mouse_genomes_project 19 35004796 35004928 + Gm24006 snoRNA snoRNA MGP_C57BL6NJ_T0050894.1 MGP_C57BL6NJ_G0025078.1 mouse_genomes_project 19 1366107 1401427 - MGP_C57BL6NJ_P0050894 Syt12 protein_coding protein_coding MGP_C57BL6NJ_T0050895.1 MGP_C57BL6NJ_G0025078.1 mouse_genomes_project 19 1370193 1374628 - Syt12 protein_coding processed_transcript MGP_C57BL6NJ_T0050896.1 MGP_C57BL6NJ_G0025078.1 mouse_genomes_project 19 1380932 1401110 - MGP_C57BL6NJ_P0050896 Syt12 protein_coding protein_coding MGP_C57BL6NJ_T0050897.1 MGP_C57BL6NJ_G0025078.1 mouse_genomes_project 19 1390109 1401140 - Syt12 protein_coding retained_intron MGP_C57BL6NJ_T0052192.1 MGP_C57BL6NJ_G0025532.1 mouse_genomes_project 19 41259579 41330028 - MGP_C57BL6NJ_P0052192 Blnk protein_coding protein_coding MGP_C57BL6NJ_T0052193.1 MGP_C57BL6NJ_G0025532.1 mouse_genomes_project 19 41259579 41329641 - MGP_C57BL6NJ_P0052193 Blnk protein_coding protein_coding MGP_C57BL6NJ_T0052194.1 MGP_C57BL6NJ_G0025532.1 mouse_genomes_project 19 41296175 41330028 - Blnk protein_coding retained_intron MGP_C57BL6NJ_T0051732.1 MGP_C57BL6NJ_G0025372.1 mouse_genomes_project 19 12060057 12061160 + MGP_C57BL6NJ_P0051732 Olfr1505 protein_coding protein_coding MGP_C57BL6NJ_T0051601.1 MGP_C57BL6NJ_G0025292.1 mouse_genomes_project 19 9099515 9113887 - MGP_C57BL6NJ_P0051601 Ms4a7 protein_coding protein_coding MGP_C57BL6NJ_T0051602.1 MGP_C57BL6NJ_G0025292.1 mouse_genomes_project 19 9099515 9115336 - MGP_C57BL6NJ_P0051602 Ms4a7 protein_coding protein_coding MGP_C57BL6NJ_T0051603.1 MGP_C57BL6NJ_G0025292.1 mouse_genomes_project 19 9099882 9115308 - MGP_C57BL6NJ_P0051603 Ms4a7 protein_coding protein_coding MGP_C57BL6NJ_T0051604.1 MGP_C57BL6NJ_G0025292.1 mouse_genomes_project 19 9099885 9103051 - MGP_C57BL6NJ_P0051604 Ms4a7 protein_coding protein_coding MGP_C57BL6NJ_T0051605.1 MGP_C57BL6NJ_G0025292.1 mouse_genomes_project 19 9099981 9115338 - Ms4a7 protein_coding retained_intron MGP_C57BL6NJ_T0001150.1 MGP_C57BL6NJ_G0001056.1 mouse_genomes_project 19 12856351 12856618 + TEC TEC MGP_C57BL6NJ_T0052638.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58541132 58578821 - MGP_C57BL6NJ_P0052638 Ccdc186 protein_coding protein_coding MGP_C57BL6NJ_T0052639.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58544182 58550195 - MGP_C57BL6NJ_P0052639 Ccdc186 protein_coding protein_coding MGP_C57BL6NJ_T0052640.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58544614 58570314 - MGP_C57BL6NJ_P0052640 Ccdc186 protein_coding protein_coding MGP_C57BL6NJ_T0052641.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58546613 58554139 - Ccdc186 protein_coding retained_intron MGP_C57BL6NJ_T0052642.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58553979 58557617 - Ccdc186 protein_coding retained_intron MGP_C57BL6NJ_T0052643.1 MGP_C57BL6NJ_G0025682.1 mouse_genomes_project 19 58556669 58578821 - Ccdc186 protein_coding retained_intron MGP_C57BL6NJ_T0099066.1 MGP_C57BL6NJ_G0037130.1 mouse_genomes_project 19 44432637 44432754 + n-R5s21 rRNA rRNA MGP_C57BL6NJ_T0052165.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40839997 40884194 - MGP_C57BL6NJ_P0052165 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0052166.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40839997 40884100 - MGP_C57BL6NJ_P0052166 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0052167.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40840891 40844604 - Aldh18a1 protein_coding retained_intron MGP_C57BL6NJ_T0052168.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40843167 40844482 - MGP_C57BL6NJ_P0052168 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0052169.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40846797 40884154 - Aldh18a1 protein_coding retained_intron MGP_C57BL6NJ_T0052170.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40865040 40884115 - MGP_C57BL6NJ_P0052170 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0052171.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40868311 40884141 - MGP_C57BL6NJ_P0052171 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0052172.1 MGP_C57BL6NJ_G0025527.1 mouse_genomes_project 19 40868354 40884113 - MGP_C57BL6NJ_P0052172 Aldh18a1 protein_coding protein_coding MGP_C57BL6NJ_T0101431.1 MGP_C57BL6NJ_G0039477.1 mouse_genomes_project 19 2457518 2457584 + Gm25432 snoRNA snoRNA MGP_C57BL6NJ_T0052495.1 MGP_C57BL6NJ_G0025635.1 mouse_genomes_project 19 47966014 47981756 + MGP_C57BL6NJ_P0052495 Taf5 protein_coding protein_coding MGP_C57BL6NJ_T0052503.1 MGP_C57BL6NJ_G0025642.1 mouse_genomes_project 19 48098692 48192062 + MGP_C57BL6NJ_P0052503 Neurl1a protein_coding protein_coding MGP_C57BL6NJ_T0052504.1 MGP_C57BL6NJ_G0025642.1 mouse_genomes_project 19 48159705 48192062 + MGP_C57BL6NJ_P0052504 Neurl1a protein_coding protein_coding MGP_C57BL6NJ_T0004008.1 MGP_C57BL6NJ_G0003580.1 mouse_genomes_project 19 9304285 9305028 - Gm19261 antisense antisense MGP_C57BL6NJ_T0100157.1 MGP_C57BL6NJ_G0038203.1 mouse_genomes_project 19 29253623 29253789 + Gm26046 snRNA snRNA MGP_C57BL6NJ_T0010518.1 MGP_C57BL6NJ_G0008603.1 mouse_genomes_project 19 7447336 7447440 + Gm22369 miRNA miRNA MGP_C57BL6NJ_T0052432.1 MGP_C57BL6NJ_G0025613.1 mouse_genomes_project 19 46874072 46887091 + MGP_C57BL6NJ_P0052432 Nolc1 protein_coding protein_coding MGP_C57BL6NJ_T0052433.1 MGP_C57BL6NJ_G0025613.1 mouse_genomes_project 19 46874239 46887100 + MGP_C57BL6NJ_P0052433 Nolc1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051174.1 MGP_C57BL6NJ_G0025170.1 mouse_genomes_project 19 3409762 3428947 + MGP_C57BL6NJ_P0051174 Cdc42bpg protein_coding protein_coding MGP_C57BL6NJ_T0051175.1 MGP_C57BL6NJ_G0025170.1 mouse_genomes_project 19 3425102 3425527 + Cdc42bpg protein_coding retained_intron MGP_C57BL6NJ_T0052263.1 MGP_C57BL6NJ_G0025559.1 mouse_genomes_project 19 42685228 42835258 - MGP_C57BL6NJ_P0052263 Crtac1 protein_coding protein_coding MGP_C57BL6NJ_T0052195.1 MGP_C57BL6NJ_G0025533.1 mouse_genomes_project 19 41365994 41398597 + MGP_C57BL6NJ_P0052195 Dntt protein_coding protein_coding MGP_C57BL6NJ_T0052196.1 MGP_C57BL6NJ_G0025533.1 mouse_genomes_project 19 41365994 41398597 + MGP_C57BL6NJ_P0052196 Dntt protein_coding protein_coding MGP_C57BL6NJ_T0051818.1 MGP_C57BL6NJ_G0025406.1 mouse_genomes_project 19 22595541 22597273 + MGP_C57BL6NJ_P0051818 Gm9938 protein_coding protein_coding MGP_C57BL6NJ_T0051306.1 MGP_C57BL6NJ_G0025191.1 mouse_genomes_project 19 4176751 4181344 - MGP_C57BL6NJ_P0051306 Dnajc4 protein_coding protein_coding MGP_C57BL6NJ_T0051307.1 MGP_C57BL6NJ_G0025191.1 mouse_genomes_project 19 4176751 4181113 - MGP_C57BL6NJ_P0051307 Dnajc4 protein_coding protein_coding MGP_C57BL6NJ_T0051657.1 MGP_C57BL6NJ_G0025313.1 mouse_genomes_project 19 9767584 9814596 + MGP_C57BL6NJ_P0051657 Patl1 protein_coding protein_coding MGP_C57BL6NJ_T0018145.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112167 6115169 + Snhg1 processed_transcript lincRNA MGP_C57BL6NJ_T0018146.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112179 6115167 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018147.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112179 6115168 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018148.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112730 6115169 + Snhg1 processed_transcript lincRNA MGP_C57BL6NJ_T0018149.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112856 6114618 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018150.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112865 6113578 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018151.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112872 6115071 + Snhg1 processed_transcript lincRNA MGP_C57BL6NJ_T0018152.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112883 6115169 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018153.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6112887 6114067 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018154.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113081 6114029 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018155.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113118 6114561 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018156.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113128 6114248 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018157.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113388 6115169 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018158.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113622 6115169 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018159.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113747 6114728 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018160.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6113829 6115169 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018161.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6114200 6115169 + Snhg1 processed_transcript retained_intron MGP_C57BL6NJ_T0018162.1 MGP_C57BL6NJ_G0015772.1 mouse_genomes_project 19 6114225 6115169 + Snhg1 processed_transcript lincRNA MGP_C57BL6NJ_T0051550.1 MGP_C57BL6NJ_G0025275.1 mouse_genomes_project 19 8585581 8597511 - MGP_C57BL6NJ_P0051550 Tmem132a protein_coding protein_coding MGP_C57BL6NJ_T0051551.1 MGP_C57BL6NJ_G0025275.1 mouse_genomes_project 19 8585593 8597349 - MGP_C57BL6NJ_P0051551 Tmem132a protein_coding protein_coding MGP_C57BL6NJ_T0052565.1 MGP_C57BL6NJ_G0025659.1 mouse_genomes_project 19 54799605 54799806 - MGP_C57BL6NJ_P0052565 Gm10197 protein_coding protein_coding MGP_C57BL6NJ_T0052019.1 MGP_C57BL6NJ_G0025473.1 mouse_genomes_project 19 34185092 34224182 - MGP_C57BL6NJ_P0052019 Lipa protein_coding protein_coding MGP_C57BL6NJ_T0052020.1 MGP_C57BL6NJ_G0025473.1 mouse_genomes_project 19 34185092 34224182 - MGP_C57BL6NJ_P0052020 Lipa protein_coding protein_coding MGP_C57BL6NJ_T0007275.1 MGP_C57BL6NJ_G0005971.1 mouse_genomes_project 19 47168038 47171290 + Gm26792 lincRNA lincRNA MGP_C57BL6NJ_T0051376.1 MGP_C57BL6NJ_G0025214.1 mouse_genomes_project 19 5490922 5697310 - protein_coding processed_transcript MGP_C57BL6NJ_T0013688.1 MGP_C57BL6NJ_G0011733.1 mouse_genomes_project 19 3248743 3251525 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052197.1 MGP_C57BL6NJ_G0025534.1 mouse_genomes_project 19 41401547 41417015 - MGP_C57BL6NJ_P0052197 Opalin protein_coding protein_coding MGP_C57BL6NJ_T0011747.1 MGP_C57BL6NJ_G0009832.1 mouse_genomes_project 19 60706760 60706844 - Gm22561 misc_RNA misc_RNA MGP_C57BL6NJ_T0052065.1 MGP_C57BL6NJ_G0025490.1 mouse_genomes_project 19 36866244 36868310 - MGP_C57BL6NJ_P0052065 Fgfbp3 protein_coding protein_coding MGP_C57BL6NJ_T0004030.1 MGP_C57BL6NJ_G0003597.1 mouse_genomes_project 19 61214591 61216499 - Gm29261 antisense antisense MGP_C57BL6NJ_T0051303.1 MGP_C57BL6NJ_G0025190.1 mouse_genomes_project 19 4171382 4176492 - MGP_C57BL6NJ_P0051303 Vegfb protein_coding protein_coding MGP_C57BL6NJ_T0051304.1 MGP_C57BL6NJ_G0025190.1 mouse_genomes_project 19 4171382 4176470 - MGP_C57BL6NJ_P0051304 Vegfb protein_coding protein_coding MGP_C57BL6NJ_T0051305.1 MGP_C57BL6NJ_G0025190.1 mouse_genomes_project 19 4175234 4175981 - Vegfb protein_coding retained_intron MGP_C57BL6NJ_T0013687.1 MGP_C57BL6NJ_G0011732.1 mouse_genomes_project 19 2435885 2436080 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0010509.1 MGP_C57BL6NJ_G0008594.1 mouse_genomes_project 19 3449207 3449272 + Mir6989 miRNA miRNA MGP_C57BL6NJ_T0050905.1 MGP_C57BL6NJ_G0025083.1 mouse_genomes_project 19 1650622 1694008 + MGP_C57BL6NJ_P0050905 Sptbn2 protein_coding protein_coding MGP_C57BL6NJ_T0007286.1 MGP_C57BL6NJ_G0005979.1 mouse_genomes_project 19 60505810 60535813 + 1810007D17Rik lincRNA lincRNA MGP_C57BL6NJ_T0050859.1 MGP_C57BL6NJ_G0025072.1 mouse_genomes_project 19 1113033 1114766 + MGP_C57BL6NJ_P0050859 Pold4 protein_coding protein_coding MGP_C57BL6NJ_T0052245.1 MGP_C57BL6NJ_G0025551.1 mouse_genomes_project 19 42429812 42431192 + MGP_C57BL6NJ_P0052245 4933411K16Rik protein_coding protein_coding MGP_C57BL6NJ_T0004027.1 MGP_C57BL6NJ_G0003594.1 mouse_genomes_project 19 55298747 55305675 - Gm16299 antisense antisense MGP_C57BL6NJ_T0052473.1 MGP_C57BL6NJ_G0025624.1 mouse_genomes_project 19 47344435 47359216 + MGP_C57BL6NJ_P0052473 Trim8 protein_coding protein_coding MGP_C57BL6NJ_T0007284.1 MGP_C57BL6NJ_G0005977.1 mouse_genomes_project 19 59106374 59158486 - B230217O12Rik lincRNA lincRNA MGP_C57BL6NJ_T0010508.1 MGP_C57BL6NJ_G0008593.1 mouse_genomes_project 19 3368149 3368238 + Mir192 miRNA miRNA MGP_C57BL6NJ_T0050949.1 MGP_C57BL6NJ_G0025097.1 mouse_genomes_project 19 1961598 1967215 - MGP_C57BL6NJ_P0050949 Npas4 protein_coding protein_coding MGP_C57BL6NJ_T0102987.1 MGP_C57BL6NJ_G0040781.1 mouse_genomes_project 19 9409569 9413233 + unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0051668.1 MGP_C57BL6NJ_G0025323.1 mouse_genomes_project 19 10272548 10273544 + MGP_C57BL6NJ_P0051668 protein_coding protein_coding MGP_C57BL6NJ_T0051229.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3505972 3521847 + MGP_C57BL6NJ_P0051229 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051230.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506088 3510266 + MGP_C57BL6NJ_P0051230 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051231.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506378 3510118 + MGP_C57BL6NJ_P0051231 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051232.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506496 3509207 + MGP_C57BL6NJ_P0051232 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051233.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506500 3510111 + MGP_C57BL6NJ_P0051233 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051234.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506506 3510970 + MGP_C57BL6NJ_P0051234 Rasgrp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051235.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506549 3509079 + Rasgrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0051236.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3506745 3510271 + MGP_C57BL6NJ_P0051236 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051237.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507159 3509063 + Rasgrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0051238.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507165 3521842 + MGP_C57BL6NJ_P0051238 Rasgrp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051239.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507179 3511054 + MGP_C57BL6NJ_P0051239 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051240.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507194 3521853 + MGP_C57BL6NJ_P0051240 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051241.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507196 3511457 + MGP_C57BL6NJ_P0051241 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051242.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507215 3521852 + MGP_C57BL6NJ_P0051242 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051243.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3507255 3510245 + MGP_C57BL6NJ_P0051243 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051244.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3508327 3509079 + Rasgrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0051245.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3508334 3510271 + MGP_C57BL6NJ_P0051245 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051246.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3508350 3510271 + MGP_C57BL6NJ_P0051246 Rasgrp2 protein_coding protein_coding MGP_C57BL6NJ_T0051247.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3508351 3510271 + Rasgrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0051248.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3509550 3511604 + Rasgrp2 protein_coding retained_intron MGP_C57BL6NJ_T0051249.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3511214 3513694 + Rasgrp2 protein_coding retained_intron MGP_C57BL6NJ_T0051250.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3511373 3516301 + Rasgrp2 protein_coding retained_intron MGP_C57BL6NJ_T0051251.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3511459 3520674 + Rasgrp2 protein_coding retained_intron MGP_C57BL6NJ_T0051252.1 MGP_C57BL6NJ_G0025175.1 mouse_genomes_project 19 3515037 3521848 + Rasgrp2 protein_coding processed_transcript MGP_C57BL6NJ_T0001149.1 MGP_C57BL6NJ_G0001055.1 mouse_genomes_project 19 9423294 9424826 - TEC TEC MGP_C57BL6NJ_T0051162.1 MGP_C57BL6NJ_G0025167.1 mouse_genomes_project 19 3331474 3339582 - MGP_C57BL6NJ_P0051162 Ppp2r5b protein_coding protein_coding MGP_C57BL6NJ_T0051163.1 MGP_C57BL6NJ_G0025167.1 mouse_genomes_project 19 3332994 3334189 - Ppp2r5b protein_coding retained_intron MGP_C57BL6NJ_T0051164.1 MGP_C57BL6NJ_G0025167.1 mouse_genomes_project 19 3337646 3339553 - Ppp2r5b protein_coding processed_transcript MGP_C57BL6NJ_T0051763.1 MGP_C57BL6NJ_G0025385.1 mouse_genomes_project 19 17092364 17096800 + Nmrk1 protein_coding retained_intron MGP_C57BL6NJ_T0051764.1 MGP_C57BL6NJ_G0025385.1 mouse_genomes_project 19 17092364 17113980 + MGP_C57BL6NJ_P0051764 Nmrk1 protein_coding protein_coding MGP_C57BL6NJ_T0051765.1 MGP_C57BL6NJ_G0025385.1 mouse_genomes_project 19 17092364 17113735 + MGP_C57BL6NJ_P0051765 Nmrk1 protein_coding protein_coding MGP_C57BL6NJ_T0051766.1 MGP_C57BL6NJ_G0025385.1 mouse_genomes_project 19 17092373 17101642 + MGP_C57BL6NJ_P0051766 Nmrk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051767.1 MGP_C57BL6NJ_G0025385.1 mouse_genomes_project 19 17092376 17097714 + Nmrk1 protein_coding retained_intron MGP_C57BL6NJ_T0100168.1 MGP_C57BL6NJ_G0038214.1 mouse_genomes_project 19 54576383 54576490 - Gm24724 snRNA snRNA MGP_C57BL6NJ_T0052191.1 MGP_C57BL6NJ_G0025531.1 mouse_genomes_project 19 41221427 41247790 + MGP_C57BL6NJ_P0052191 Zfp518a protein_coding protein_coding MGP_C57BL6NJ_T0013710.1 MGP_C57BL6NJ_G0011755.1 mouse_genomes_project 19 27916111 27916504 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051225.1 MGP_C57BL6NJ_G0025174.1 mouse_genomes_project 19 3491443 3505092 + MGP_C57BL6NJ_P0051225 Pygm protein_coding protein_coding MGP_C57BL6NJ_T0051226.1 MGP_C57BL6NJ_G0025174.1 mouse_genomes_project 19 3491459 3505081 + MGP_C57BL6NJ_P0051226 Pygm protein_coding protein_coding MGP_C57BL6NJ_T0051227.1 MGP_C57BL6NJ_G0025174.1 mouse_genomes_project 19 3499765 3501239 + Pygm protein_coding retained_intron MGP_C57BL6NJ_T0051228.1 MGP_C57BL6NJ_G0025174.1 mouse_genomes_project 19 3504127 3504924 + Pygm protein_coding retained_intron MGP_C57BL6NJ_T0013704.1 MGP_C57BL6NJ_G0011749.1 mouse_genomes_project 19 14707956 14708743 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0004004.1 MGP_C57BL6NJ_G0003577.1 mouse_genomes_project 19 4511835 4518706 + Gm17227 antisense antisense MGP_C57BL6NJ_T0004005.1 MGP_C57BL6NJ_G0003577.1 mouse_genomes_project 19 4511911 4518528 + Gm17227 antisense antisense MGP_C57BL6NJ_T0100163.1 MGP_C57BL6NJ_G0038209.1 mouse_genomes_project 19 44354353 44354460 - Gm24400 snRNA snRNA MGP_C57BL6NJ_T0052549.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54337642 54442688 - MGP_C57BL6NJ_P0052549 Xpnpep1 protein_coding protein_coding MGP_C57BL6NJ_T0052550.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54340366 54442776 - MGP_C57BL6NJ_P0052550 Xpnpep1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052551.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54391152 54421731 - Xpnpep1 protein_coding processed_transcript MGP_C57BL6NJ_T0052552.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54391153 54444328 - MGP_C57BL6NJ_P0052552 Xpnpep1 protein_coding protein_coding MGP_C57BL6NJ_T0052553.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54395334 54396604 - Xpnpep1 protein_coding retained_intron MGP_C57BL6NJ_T0052554.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54407861 54415311 - Xpnpep1 protein_coding processed_transcript MGP_C57BL6NJ_T0052555.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54410037 54421566 - Xpnpep1 protein_coding processed_transcript MGP_C57BL6NJ_T0052556.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54412152 54413575 - Xpnpep1 protein_coding retained_intron MGP_C57BL6NJ_T0052557.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54412181 54442695 - MGP_C57BL6NJ_P0052557 Xpnpep1 protein_coding protein_coding MGP_C57BL6NJ_T0052558.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54418860 54433580 - Xpnpep1 protein_coding processed_transcript MGP_C57BL6NJ_T0052559.1 MGP_C57BL6NJ_G0025656.1 mouse_genomes_project 19 54435344 54442699 - Xpnpep1 protein_coding processed_transcript MGP_C57BL6NJ_T0052384.1 MGP_C57BL6NJ_G0025602.1 mouse_genomes_project 19 46288245 46296398 - MGP_C57BL6NJ_P0052384 Poll protein_coding protein_coding MGP_C57BL6NJ_T0004007.1 MGP_C57BL6NJ_G0003579.1 mouse_genomes_project 19 8981925 9078438 + 4930526L06Rik antisense antisense MGP_C57BL6NJ_T0052566.1 MGP_C57BL6NJ_G0025660.1 mouse_genomes_project 19 54807248 54822925 - MGP_C57BL6NJ_P0052566 Smndc1 protein_coding protein_coding MGP_C57BL6NJ_T0100151.1 MGP_C57BL6NJ_G0038197.1 mouse_genomes_project 19 12919606 12919729 - Gm26026 snRNA snRNA MGP_C57BL6NJ_T0051695.1 MGP_C57BL6NJ_G0025337.1 mouse_genomes_project 19 10797766 10833752 - MGP_C57BL6NJ_P0051695 Zfp91 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051697.1 MGP_C57BL6NJ_G0025337.1 mouse_genomes_project 19 10801490 10833752 - MGP_C57BL6NJ_P0051697 Zfp91 protein_coding protein_coding MGP_C57BL6NJ_T0051698.1 MGP_C57BL6NJ_G0025337.1 mouse_genomes_project 19 10805981 10827996 - Zfp91 protein_coding retained_intron MGP_C57BL6NJ_T0051293.1 MGP_C57BL6NJ_G0025186.1 mouse_genomes_project 19 4127254 4137297 + MGP_C57BL6NJ_P0051293 Bad protein_coding protein_coding MGP_C57BL6NJ_T0051294.1 MGP_C57BL6NJ_G0025186.1 mouse_genomes_project 19 4127716 4137291 + MGP_C57BL6NJ_P0051294 Bad protein_coding protein_coding MGP_C57BL6NJ_T0051295.1 MGP_C57BL6NJ_G0025186.1 mouse_genomes_project 19 4127894 4137292 + MGP_C57BL6NJ_P0051295 Bad protein_coding protein_coding MGP_C57BL6NJ_T0051296.1 MGP_C57BL6NJ_G0025186.1 mouse_genomes_project 19 4128272 4136651 + MGP_C57BL6NJ_P0051296 Bad protein_coding protein_coding MGP_C57BL6NJ_T0051297.1 MGP_C57BL6NJ_G0025186.1 mouse_genomes_project 19 4136165 4137273 + MGP_C57BL6NJ_P0051297 Bad protein_coding protein_coding MGP_C57BL6NJ_T0007264.1 MGP_C57BL6NJ_G0005963.1 mouse_genomes_project 19 41191671 41198319 + E030044B06Rik lincRNA lincRNA MGP_C57BL6NJ_T0050904.1 MGP_C57BL6NJ_G0025082.1 mouse_genomes_project 19 1561981 1565047 - MGP_C57BL6NJ_P0050904 Rce1 protein_coding protein_coding MGP_C57BL6NJ_T0013723.1 MGP_C57BL6NJ_G0011768.1 mouse_genomes_project 19 62877230 62877598 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052396.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491247 46497324 - MGP_C57BL6NJ_P0052396 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0052397.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491262 46497365 - MGP_C57BL6NJ_P0052397 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0052398.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491267 46497323 - MGP_C57BL6NJ_P0052398 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0052399.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491385 46497308 - MGP_C57BL6NJ_P0052399 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0052400.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491420 46497134 - MGP_C57BL6NJ_P0052400 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0052401.1 MGP_C57BL6NJ_G0025605.1 mouse_genomes_project 19 46491439 46497134 - MGP_C57BL6NJ_P0052401 Fgf8 protein_coding protein_coding MGP_C57BL6NJ_T0010528.1 MGP_C57BL6NJ_G0008613.1 mouse_genomes_project 19 28325729 28325826 + Mir101b miRNA miRNA MGP_C57BL6NJ_T0051073.1 MGP_C57BL6NJ_G0025144.1 mouse_genomes_project 19 2959235 2962204 - MGP_C57BL6NJ_P0051073 Tigd3 protein_coding protein_coding MGP_C57BL6NJ_T0007267.1 MGP_C57BL6NJ_G0005966.1 mouse_genomes_project 19 46008119 46018270 - Gm29595 lincRNA lincRNA MGP_C57BL6NJ_T0007268.1 MGP_C57BL6NJ_G0005966.1 mouse_genomes_project 19 46008128 46010547 - Gm29595 lincRNA lincRNA MGP_C57BL6NJ_T0001148.1 MGP_C57BL6NJ_G0001054.1 mouse_genomes_project 19 2866556 2867009 + TEC TEC MGP_C57BL6NJ_T0051673.1 MGP_C57BL6NJ_G0025328.1 mouse_genomes_project 19 10438203 10442409 + MGP_C57BL6NJ_P0051673 Pfpl protein_coding protein_coding MGP_C57BL6NJ_T0007269.1 MGP_C57BL6NJ_G0005967.1 mouse_genomes_project 19 46018558 46019506 - Gm29593 lincRNA lincRNA MGP_C57BL6NJ_T0013717.1 MGP_C57BL6NJ_G0011762.1 mouse_genomes_project 19 47028211 47029291 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0007240.1 MGP_C57BL6NJ_G0005947.1 mouse_genomes_project 19 19038720 19056208 + 1500015L24Rik lincRNA lincRNA MGP_C57BL6NJ_T0007241.1 MGP_C57BL6NJ_G0005947.1 mouse_genomes_project 19 19055785 19056200 + 1500015L24Rik lincRNA lincRNA MGP_C57BL6NJ_T0050728.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 546972 605064 + MGP_C57BL6NJ_P0050728 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050729.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 546972 603153 + MGP_C57BL6NJ_P0050729 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050730.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 546972 595607 + MGP_C57BL6NJ_P0050730 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050731.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 546972 605065 + MGP_C57BL6NJ_P0050731 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050732.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 546972 603153 + MGP_C57BL6NJ_P0050732 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050733.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547074 592324 + MGP_C57BL6NJ_P0050733 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050734.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547584 595613 + MGP_C57BL6NJ_P0050734 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050735.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547669 591057 + MGP_C57BL6NJ_P0050735 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050736.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547685 567723 + Suv420h1 protein_coding retained_intron MGP_C57BL6NJ_T0050737.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547700 590502 + MGP_C57BL6NJ_P0050737 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050738.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547717 603450 + MGP_C57BL6NJ_P0050738 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050739.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547720 578211 + MGP_C57BL6NJ_P0050739 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050740.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547769 595585 + MGP_C57BL6NJ_P0050740 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050741.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 547784 578229 + MGP_C57BL6NJ_P0050741 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050742.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 548098 581704 + MGP_C57BL6NJ_P0050742 Suv420h1 protein_coding protein_coding MGP_C57BL6NJ_T0050743.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 576763 585621 + Suv420h1 protein_coding retained_intron MGP_C57BL6NJ_T0050744.1 MGP_C57BL6NJ_G0025042.1 mouse_genomes_project 19 590393 593402 + Suv420h1 protein_coding retained_intron MGP_C57BL6NJ_T0051352.1 MGP_C57BL6NJ_G0025205.1 mouse_genomes_project 19 4650905 4722772 - MGP_C57BL6NJ_P0051352 Rtn3 protein_coding protein_coding MGP_C57BL6NJ_T0051353.1 MGP_C57BL6NJ_G0025205.1 mouse_genomes_project 19 4650905 4722772 - MGP_C57BL6NJ_P0051353 Rtn3 protein_coding protein_coding MGP_C57BL6NJ_T0051354.1 MGP_C57BL6NJ_G0025205.1 mouse_genomes_project 19 4650905 4722764 - MGP_C57BL6NJ_P0051354 Rtn3 protein_coding protein_coding MGP_C57BL6NJ_T0051355.1 MGP_C57BL6NJ_G0025205.1 mouse_genomes_project 19 4652032 4722702 - MGP_C57BL6NJ_P0051355 Rtn3 protein_coding protein_coding MGP_C57BL6NJ_T0051733.1 MGP_C57BL6NJ_G0025373.1 mouse_genomes_project 19 12628428 12793623 - MGP_C57BL6NJ_P0051733 Tle4 protein_coding protein_coding MGP_C57BL6NJ_T0051734.1 MGP_C57BL6NJ_G0025373.1 mouse_genomes_project 19 12628506 12793691 - MGP_C57BL6NJ_P0051734 Tle4 protein_coding protein_coding MGP_C57BL6NJ_T0051746.1 MGP_C57BL6NJ_G0025377.1 mouse_genomes_project 19 14736509 14926736 + MGP_C57BL6NJ_P0051746 Gna14 protein_coding protein_coding MGP_C57BL6NJ_T0010517.1 MGP_C57BL6NJ_G0008602.1 mouse_genomes_project 19 6688244 6688326 - Gm24543 miRNA miRNA MGP_C57BL6NJ_T0051365.1 MGP_C57BL6NJ_G0025209.1 mouse_genomes_project 19 4862973 4865178 + Hrasls5 protein_coding retained_intron MGP_C57BL6NJ_T0051366.1 MGP_C57BL6NJ_G0025209.1 mouse_genomes_project 19 4862987 4891311 + MGP_C57BL6NJ_P0051366 Hrasls5 protein_coding protein_coding MGP_C57BL6NJ_T0051367.1 MGP_C57BL6NJ_G0025209.1 mouse_genomes_project 19 4863037 4891710 + MGP_C57BL6NJ_P0051367 Hrasls5 protein_coding protein_coding MGP_C57BL6NJ_T0003990.1 MGP_C57BL6NJ_G0003570.1 mouse_genomes_project 19 1752303 1756576 + Gm21844 antisense antisense MGP_C57BL6NJ_T0052217.1 MGP_C57BL6NJ_G0025545.1 mouse_genomes_project 19 42301108 42311479 - MGP_C57BL6NJ_P0052217 Exosc1 protein_coding protein_coding MGP_C57BL6NJ_T0052218.1 MGP_C57BL6NJ_G0025545.1 mouse_genomes_project 19 42301108 42311479 - MGP_C57BL6NJ_P0052218 Exosc1 protein_coding protein_coding MGP_C57BL6NJ_T0052177.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40910913 40912693 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052178.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40910936 40914266 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052179.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40910944 41056804 + MGP_C57BL6NJ_P0052179 Entpd1 protein_coding protein_coding MGP_C57BL6NJ_T0052180.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40964695 41058612 + MGP_C57BL6NJ_P0052180 Entpd1 protein_coding protein_coding MGP_C57BL6NJ_T0052181.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40964724 41042055 + MGP_C57BL6NJ_P0052181 Entpd1 protein_coding protein_coding MGP_C57BL6NJ_T0052182.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40964769 41056093 + MGP_C57BL6NJ_P0052182 Entpd1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052183.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40965124 41023282 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052184.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40965418 41040126 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052185.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 40987931 41040222 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052186.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 41043078 41056765 + MGP_C57BL6NJ_P0052186 Entpd1 protein_coding protein_coding MGP_C57BL6NJ_T0052187.1 MGP_C57BL6NJ_G0025529.1 mouse_genomes_project 19 41053193 41053875 + Entpd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052101.1 MGP_C57BL6NJ_G0025503.1 mouse_genomes_project 19 38201351 38210041 - MGP_C57BL6NJ_P0052101 Rbp4 protein_coding protein_coding MGP_C57BL6NJ_T0052102.1 MGP_C57BL6NJ_G0025503.1 mouse_genomes_project 19 38201351 38209531 - MGP_C57BL6NJ_P0052102 Rbp4 protein_coding protein_coding MGP_C57BL6NJ_T0051998.1 MGP_C57BL6NJ_G0025461.1 mouse_genomes_project 19 32706042 32962638 - MGP_C57BL6NJ_P0051998 Rnls protein_coding protein_coding MGP_C57BL6NJ_T0051999.1 MGP_C57BL6NJ_G0025461.1 mouse_genomes_project 19 32706417 32960371 - MGP_C57BL6NJ_P0051999 Rnls protein_coding protein_coding MGP_C57BL6NJ_T0052580.1 MGP_C57BL6NJ_G0025666.1 mouse_genomes_project 19 55425379 55529785 + MGP_C57BL6NJ_P0052580 Shoc2 protein_coding protein_coding MGP_C57BL6NJ_T0052581.1 MGP_C57BL6NJ_G0025666.1 mouse_genomes_project 19 55425996 55529785 + MGP_C57BL6NJ_P0052581 Shoc2 protein_coding protein_coding MGP_C57BL6NJ_T0010501.1 MGP_C57BL6NJ_G0008586.1 mouse_genomes_project 19 1096580 1096667 - Gm26115 miRNA miRNA MGP_C57BL6NJ_T0052680.1 MGP_C57BL6NJ_G0025689.1 mouse_genomes_project 19 59440345 59999079 + MGP_C57BL6NJ_P0052680 Atrnl1 protein_coding protein_coding MGP_C57BL6NJ_T0051703.1 MGP_C57BL6NJ_G0025343.1 mouse_genomes_project 19 10945526 10946629 - MGP_C57BL6NJ_P0051703 Olfr1447 protein_coding protein_coding MGP_C57BL6NJ_T0051526.1 MGP_C57BL6NJ_G0025263.1 mouse_genomes_project 19 8228790 8253471 + MGP_C57BL6NJ_P0051526 Cpsf7 protein_coding protein_coding MGP_C57BL6NJ_T0098851.1 MGP_C57BL6NJ_G0036915.1 mouse_genomes_project 19 11998123 11998920 + pseudogene pseudogene MGP_C57BL6NJ_T0051082.1 MGP_C57BL6NJ_G0025146.1 mouse_genomes_project 19 2989265 2996519 - MGP_C57BL6NJ_P0051082 Cdc42ep2 protein_coding protein_coding MGP_C57BL6NJ_T0051976.1 MGP_C57BL6NJ_G0025455.1 mouse_genomes_project 19 31438909 31526839 - MGP_C57BL6NJ_P0051976 Asah2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0013703.1 MGP_C57BL6NJ_G0011748.1 mouse_genomes_project 19 14559298 14561969 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0018177.1 MGP_C57BL6NJ_G0015779.1 mouse_genomes_project 19 27131575 27133072 + Gm20407 processed_transcript processed_transcript MGP_C57BL6NJ_T0052315.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44549541 44586087 - MGP_C57BL6NJ_P0052315 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0052316.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44549541 44586336 - MGP_C57BL6NJ_P0052316 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0052317.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44549541 44586346 - MGP_C57BL6NJ_P0052317 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0052318.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44571957 44586317 - MGP_C57BL6NJ_P0052318 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0052319.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44575644 44585956 - MGP_C57BL6NJ_P0052319 Erlin1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052320.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44575646 44584244 - MGP_C57BL6NJ_P0052320 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0052321.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44582632 44586305 - Erlin1 protein_coding retained_intron MGP_C57BL6NJ_T0052322.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44584033 44586257 - Erlin1 protein_coding retained_intron MGP_C57BL6NJ_T0052323.1 MGP_C57BL6NJ_G0025576.1 mouse_genomes_project 19 44585876 44586251 - MGP_C57BL6NJ_P0052323 Erlin1 protein_coding protein_coding MGP_C57BL6NJ_T0098855.1 MGP_C57BL6NJ_G0036919.1 mouse_genomes_project 19 63033941 63034524 - pseudogene pseudogene MGP_C57BL6NJ_T0051434.1 MGP_C57BL6NJ_G0025225.1 mouse_genomes_project 19 6205577 6207902 + MGP_C57BL6NJ_P0051434 Zbtb3 protein_coding protein_coding MGP_C57BL6NJ_T0052029.1 MGP_C57BL6NJ_G0025479.1 mouse_genomes_project 19 34399341 34411059 + MGP_C57BL6NJ_P0052029 Ifit1 protein_coding protein_coding MGP_C57BL6NJ_T0051574.1 MGP_C57BL6NJ_G0025281.1 mouse_genomes_project 19 8697917 8710295 - MGP_C57BL6NJ_P0051574 Ms4a10 protein_coding protein_coding MGP_C57BL6NJ_T0051575.1 MGP_C57BL6NJ_G0025281.1 mouse_genomes_project 19 8697921 8710270 - MGP_C57BL6NJ_P0051575 Ms4a10 protein_coding protein_coding MGP_C57BL6NJ_T0051576.1 MGP_C57BL6NJ_G0025281.1 mouse_genomes_project 19 8697924 8701481 - MGP_C57BL6NJ_P0051576 Ms4a10 protein_coding protein_coding MGP_C57BL6NJ_T0102986.1 MGP_C57BL6NJ_G0040780.1 mouse_genomes_project 19 6807075 6871982 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0051607.1 MGP_C57BL6NJ_G0025294.1 mouse_genomes_project 19 9186484 9199684 + MGP_C57BL6NJ_P0051607 Ms4a4c protein_coding protein_coding MGP_C57BL6NJ_T0051608.1 MGP_C57BL6NJ_G0025294.1 mouse_genomes_project 19 9189375 9208542 + MGP_C57BL6NJ_P0051608 Ms4a4c protein_coding protein_coding MGP_C57BL6NJ_T0051609.1 MGP_C57BL6NJ_G0025294.1 mouse_genomes_project 19 9198105 9207764 + MGP_C57BL6NJ_P0051609 Ms4a4c protein_coding protein_coding MGP_C57BL6NJ_T0101455.1 MGP_C57BL6NJ_G0039501.1 mouse_genomes_project 19 44632627 44632773 - Gm24336 snoRNA snoRNA MGP_C57BL6NJ_T0051832.1 MGP_C57BL6NJ_G0025414.1 mouse_genomes_project 19 23645166 23832432 - MGP_C57BL6NJ_P0051832 Pgm5 protein_coding protein_coding MGP_C57BL6NJ_T0051833.1 MGP_C57BL6NJ_G0025414.1 mouse_genomes_project 19 23646701 23731322 - Pgm5 protein_coding processed_transcript MGP_C57BL6NJ_T0051834.1 MGP_C57BL6NJ_G0025414.1 mouse_genomes_project 19 23788591 23832264 - Pgm5 protein_coding retained_intron MGP_C57BL6NJ_T0051835.1 MGP_C57BL6NJ_G0025414.1 mouse_genomes_project 19 23788692 23832229 - Pgm5 protein_coding retained_intron MGP_C57BL6NJ_T0052312.1 MGP_C57BL6NJ_G0025574.1 mouse_genomes_project 19 44457151 44489827 - MGP_C57BL6NJ_P0052312 Cpn1 protein_coding protein_coding MGP_C57BL6NJ_T0052313.1 MGP_C57BL6NJ_G0025574.1 mouse_genomes_project 19 44462844 44470549 - Cpn1 protein_coding retained_intron MGP_C57BL6NJ_T0051358.1 MGP_C57BL6NJ_G0025207.1 mouse_genomes_project 19 4805494 4835584 + MGP_C57BL6NJ_P0051358 Pla2g16 protein_coding protein_coding MGP_C57BL6NJ_T0051359.1 MGP_C57BL6NJ_G0025207.1 mouse_genomes_project 19 4805494 4828771 + MGP_C57BL6NJ_P0051359 Pla2g16 protein_coding protein_coding MGP_C57BL6NJ_T0051360.1 MGP_C57BL6NJ_G0025207.1 mouse_genomes_project 19 4805512 4826176 + MGP_C57BL6NJ_P0051360 Pla2g16 protein_coding protein_coding MGP_C57BL6NJ_T0051361.1 MGP_C57BL6NJ_G0025207.1 mouse_genomes_project 19 4805520 4833750 + MGP_C57BL6NJ_P0051361 Pla2g16 protein_coding protein_coding MGP_C57BL6NJ_T0003991.1 MGP_C57BL6NJ_G0003571.1 mouse_genomes_project 19 2427041 2435342 + 4930481A15Rik antisense antisense MGP_C57BL6NJ_T0003992.1 MGP_C57BL6NJ_G0003571.1 mouse_genomes_project 19 2427063 2437906 + 4930481A15Rik antisense antisense MGP_C57BL6NJ_T0003993.1 MGP_C57BL6NJ_G0003571.1 mouse_genomes_project 19 2427116 2438009 + 4930481A15Rik antisense antisense MGP_C57BL6NJ_T0003994.1 MGP_C57BL6NJ_G0003571.1 mouse_genomes_project 19 2427123 2437913 + 4930481A15Rik antisense antisense MGP_C57BL6NJ_T0003995.1 MGP_C57BL6NJ_G0003571.1 mouse_genomes_project 19 2427175 2443172 + 4930481A15Rik antisense antisense MGP_C57BL6NJ_T0051064.1 MGP_C57BL6NJ_G0025141.1 mouse_genomes_project 19 2815955 2830116 - MGP_C57BL6NJ_P0051064 Scyl1 protein_coding protein_coding MGP_C57BL6NJ_T0052298.1 MGP_C57BL6NJ_G0025570.1 mouse_genomes_project 19 44215984 44242189 - MGP_C57BL6NJ_P0052298 Cox15 protein_coding protein_coding MGP_C57BL6NJ_T0052299.1 MGP_C57BL6NJ_G0025570.1 mouse_genomes_project 19 44220767 44223465 - Cox15 protein_coding retained_intron MGP_C57BL6NJ_T0052025.1 MGP_C57BL6NJ_G0025476.1 mouse_genomes_project 19 34317753 34321276 + MGP_C57BL6NJ_P0052025 protein_coding protein_coding MGP_C57BL6NJ_T0052466.1 MGP_C57BL6NJ_G0025622.1 mouse_genomes_project 19 47211551 47230630 - MGP_C57BL6NJ_P0052466 Actr1a protein_coding protein_coding MGP_C57BL6NJ_T0101437.1 MGP_C57BL6NJ_G0039483.1 mouse_genomes_project 19 6114066 6114135 + Gm22680 snoRNA snoRNA MGP_C57BL6NJ_T0052489.1 MGP_C57BL6NJ_G0025632.1 mouse_genomes_project 19 47774056 47861722 - MGP_C57BL6NJ_P0052489 Nt5c2 protein_coding protein_coding MGP_C57BL6NJ_T0052490.1 MGP_C57BL6NJ_G0025632.1 mouse_genomes_project 19 47774056 47854543 - MGP_C57BL6NJ_P0052490 Nt5c2 protein_coding protein_coding MGP_C57BL6NJ_T0052491.1 MGP_C57BL6NJ_G0025632.1 mouse_genomes_project 19 47775053 47910436 - MGP_C57BL6NJ_P0052491 Nt5c2 protein_coding protein_coding MGP_C57BL6NJ_T0052492.1 MGP_C57BL6NJ_G0025632.1 mouse_genomes_project 19 47778734 47786409 - MGP_C57BL6NJ_P0052492 Nt5c2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052204.1 MGP_C57BL6NJ_G0025539.1 mouse_genomes_project 19 41944160 41948327 + MGP_C57BL6NJ_P0052204 Gm340 protein_coding protein_coding MGP_C57BL6NJ_T0052310.1 MGP_C57BL6NJ_G0025573.1 mouse_genomes_project 19 44343923 44411396 - MGP_C57BL6NJ_P0052310 Dnmbp protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052311.1 MGP_C57BL6NJ_G0025573.1 mouse_genomes_project 19 44345077 44411409 - MGP_C57BL6NJ_P0052311 Dnmbp protein_coding protein_coding MGP_C57BL6NJ_T0100158.1 MGP_C57BL6NJ_G0038204.1 mouse_genomes_project 19 34567078 34567239 + Gm22082 snRNA snRNA MGP_C57BL6NJ_T0010544.1 MGP_C57BL6NJ_G0008629.1 mouse_genomes_project 19 48206140 48206211 - Mir6995 miRNA miRNA MGP_C57BL6NJ_T0050978.1 MGP_C57BL6NJ_G0025113.1 mouse_genomes_project 19 2381882 2383881 - MGP_C57BL6NJ_P0050978 Banf1 protein_coding protein_coding MGP_C57BL6NJ_T0050979.1 MGP_C57BL6NJ_G0025113.1 mouse_genomes_project 19 2381882 2383583 - MGP_C57BL6NJ_P0050979 Banf1 protein_coding protein_coding MGP_C57BL6NJ_T0051672.1 MGP_C57BL6NJ_G0025327.1 mouse_genomes_project 19 10432563 10433651 + MGP_C57BL6NJ_P0051672 Olfr1441 protein_coding protein_coding MGP_C57BL6NJ_T0013707.1 MGP_C57BL6NJ_G0011752.1 mouse_genomes_project 19 22534599 22535592 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050939.1 MGP_C57BL6NJ_G0025093.1 mouse_genomes_project 19 1850841 1870537 - MGP_C57BL6NJ_P0050939 Bbs1 protein_coding protein_coding MGP_C57BL6NJ_T0051916.1 MGP_C57BL6NJ_G0025437.1 mouse_genomes_project 19 28554437 28557820 - Rln1 protein_coding retained_intron MGP_C57BL6NJ_T0051917.1 MGP_C57BL6NJ_G0025437.1 mouse_genomes_project 19 28554974 28557938 - MGP_C57BL6NJ_P0051917 Rln1 protein_coding protein_coding MGP_C57BL6NJ_T0052027.1 MGP_C57BL6NJ_G0025478.1 mouse_genomes_project 19 34373287 34386049 - MGP_C57BL6NJ_P0052027 Ifit1bl2 protein_coding protein_coding MGP_C57BL6NJ_T0052028.1 MGP_C57BL6NJ_G0025478.1 mouse_genomes_project 19 34373289 34399214 - MGP_C57BL6NJ_P0052028 Ifit1bl2 protein_coding protein_coding MGP_C57BL6NJ_T0052002.1 MGP_C57BL6NJ_G0025464.1 mouse_genomes_project 19 33625436 33641189 + MGP_C57BL6NJ_P0052002 Lipf protein_coding protein_coding MGP_C57BL6NJ_T0052474.1 MGP_C57BL6NJ_G0025625.1 mouse_genomes_project 19 47376252 47421852 - MGP_C57BL6NJ_P0052474 Arl3 protein_coding protein_coding MGP_C57BL6NJ_T0051843.1 MGP_C57BL6NJ_G0025419.1 mouse_genomes_project 19 24537963 24644733 + MGP_C57BL6NJ_P0051843 Dmrt1 protein_coding protein_coding MGP_C57BL6NJ_T0051844.1 MGP_C57BL6NJ_G0025419.1 mouse_genomes_project 19 24538051 24643894 + MGP_C57BL6NJ_P0051844 Dmrt1 protein_coding protein_coding MGP_C57BL6NJ_T0051845.1 MGP_C57BL6NJ_G0025419.1 mouse_genomes_project 19 24538052 24595074 + Dmrt1 protein_coding processed_transcript MGP_C57BL6NJ_T0052420.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46841108 46860389 + Pprc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052421.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46854730 46871121 + MGP_C57BL6NJ_P0052421 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052422.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46854772 46871125 + MGP_C57BL6NJ_P0052422 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052423.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46854775 46871119 + MGP_C57BL6NJ_P0052423 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052424.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46855023 46859650 + Pprc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052425.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46855023 46860630 + MGP_C57BL6NJ_P0052425 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052426.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46855055 46860995 + MGP_C57BL6NJ_P0052426 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052427.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46855427 46860820 + MGP_C57BL6NJ_P0052427 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052428.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46855450 46860836 + MGP_C57BL6NJ_P0052428 Pprc1 protein_coding protein_coding MGP_C57BL6NJ_T0052429.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46862272 46871011 + Pprc1 protein_coding retained_intron MGP_C57BL6NJ_T0052430.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46866025 46867280 + Pprc1 protein_coding processed_transcript MGP_C57BL6NJ_T0052431.1 MGP_C57BL6NJ_G0025612.1 mouse_genomes_project 19 46869963 46871011 + Pprc1 protein_coding retained_intron MGP_C57BL6NJ_T0013693.1 MGP_C57BL6NJ_G0011738.1 mouse_genomes_project 19 7104204 7105648 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0050899.1 MGP_C57BL6NJ_G0025080.1 mouse_genomes_project 19 1436893 1550197 + MGP_C57BL6NJ_P0050899 Pcx protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050900.1 MGP_C57BL6NJ_G0025080.1 mouse_genomes_project 19 1437008 1561183 + MGP_C57BL6NJ_P0050900 Pcx protein_coding protein_coding MGP_C57BL6NJ_T0050901.1 MGP_C57BL6NJ_G0025080.1 mouse_genomes_project 19 1531795 1561183 + MGP_C57BL6NJ_P0050901 Pcx protein_coding protein_coding MGP_C57BL6NJ_T0052542.1 MGP_C57BL6NJ_G0025652.1 mouse_genomes_project 19 49219091 49874159 + MGP_C57BL6NJ_P0052542 Sorcs3 protein_coding protein_coding MGP_C57BL6NJ_T0052221.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42319070 42359085 - MGP_C57BL6NJ_P0052221 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052222.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42319070 42359128 - MGP_C57BL6NJ_P0052222 Mms19 protein_coding protein_coding MGP_C57BL6NJ_T0052223.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322226 42342680 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052224.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322230 42347692 - MGP_C57BL6NJ_P0052224 Mms19 protein_coding protein_coding MGP_C57BL6NJ_T0052225.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322232 42359107 - MGP_C57BL6NJ_P0052225 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052226.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322232 42359088 - MGP_C57BL6NJ_P0052226 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052227.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322398 42359103 - MGP_C57BL6NJ_P0052227 Mms19 protein_coding protein_coding MGP_C57BL6NJ_T0052228.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322510 42333160 - MGP_C57BL6NJ_P0052228 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052229.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42322570 42323649 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052230.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42324813 42359110 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052231.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42325001 42331966 - MGP_C57BL6NJ_P0052231 Mms19 protein_coding protein_coding MGP_C57BL6NJ_T0052232.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42325186 42326254 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052233.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42325696 42359108 - MGP_C57BL6NJ_P0052233 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052234.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42327748 42329366 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052235.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42331118 42359101 - MGP_C57BL6NJ_P0052235 Mms19 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052236.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42332478 42333189 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052237.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42340801 42341129 - Mms19 protein_coding retained_intron MGP_C57BL6NJ_T0052238.1 MGP_C57BL6NJ_G0025547.1 mouse_genomes_project 19 42341009 42347711 - MGP_C57BL6NJ_P0052238 Mms19 protein_coding protein_coding MGP_C57BL6NJ_T0050990.1 MGP_C57BL6NJ_G0025118.1 mouse_genomes_project 19 2445356 2447513 + AI837181 protein_coding processed_transcript MGP_C57BL6NJ_T0050991.1 MGP_C57BL6NJ_G0025118.1 mouse_genomes_project 19 2445356 2447513 + MGP_C57BL6NJ_P0050991 AI837181 protein_coding protein_coding MGP_C57BL6NJ_T0050869.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1184390 1206352 - MGP_C57BL6NJ_P0050869 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0050870.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1184390 1206427 - MGP_C57BL6NJ_P0050870 Adrbk1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050871.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1184391 1208657 - MGP_C57BL6NJ_P0050871 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0050872.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1184410 1208649 - MGP_C57BL6NJ_P0050872 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0050873.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1186531 1187727 - Adrbk1 protein_coding retained_intron MGP_C57BL6NJ_T0050874.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1186719 1187718 - MGP_C57BL6NJ_P0050874 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0050875.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1186749 1188807 - MGP_C57BL6NJ_P0050875 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0050876.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1188785 1190135 - Adrbk1 protein_coding retained_intron MGP_C57BL6NJ_T0050877.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1189670 1206424 - Adrbk1 protein_coding retained_intron MGP_C57BL6NJ_T0050878.1 MGP_C57BL6NJ_G0025075.1 mouse_genomes_project 19 1190890 1205605 - MGP_C57BL6NJ_P0050878 Adrbk1 protein_coding protein_coding MGP_C57BL6NJ_T0010522.1 MGP_C57BL6NJ_G0008607.1 mouse_genomes_project 19 11730405 11730514 - Gm23931 miRNA miRNA MGP_C57BL6NJ_T0052042.1 MGP_C57BL6NJ_G0025485.1 mouse_genomes_project 19 35979699 35989179 - MGP_C57BL6NJ_P0052042 Ankrd1 protein_coding protein_coding MGP_C57BL6NJ_T0051717.1 MGP_C57BL6NJ_G0025357.1 mouse_genomes_project 19 11484567 11485497 + MGP_C57BL6NJ_P0051717 Olfr1469 protein_coding protein_coding MGP_C57BL6NJ_T0052731.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63121098 63211241 - MGP_C57BL6NJ_P0052731 Zfp950 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052732.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63187921 63211286 - MGP_C57BL6NJ_P0052732 Zfp950 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052733.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63189470 63190311 - Zfp950 protein_coding retained_intron MGP_C57BL6NJ_T0052734.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63190061 63211263 - MGP_C57BL6NJ_P0052734 Zfp950 protein_coding protein_coding MGP_C57BL6NJ_T0052735.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63190080 63211265 - MGP_C57BL6NJ_P0052735 Zfp950 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052736.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63190211 63211216 - MGP_C57BL6NJ_P0052736 Zfp950 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052737.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63191068 63211208 - MGP_C57BL6NJ_P0052737 Zfp950 protein_coding protein_coding MGP_C57BL6NJ_T0052738.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63192357 63192528 - MGP_C57BL6NJ_P0052738 Zfp950 protein_coding protein_coding MGP_C57BL6NJ_T0052739.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63194996 63211236 - MGP_C57BL6NJ_P0052739 Zfp950 protein_coding protein_coding MGP_C57BL6NJ_T0052740.1 MGP_C57BL6NJ_G0025714.1 mouse_genomes_project 19 63199520 63200082 - MGP_C57BL6NJ_P0052740 Zfp950 protein_coding protein_coding MGP_C57BL6NJ_T0100162.1 MGP_C57BL6NJ_G0038208.1 mouse_genomes_project 19 42353157 42353256 + Gm23113 snRNA snRNA MGP_C57BL6NJ_T0004003.1 MGP_C57BL6NJ_G0003576.1 mouse_genomes_project 19 3671058 3672187 - Gm14967 antisense antisense MGP_C57BL6NJ_T0052415.1 MGP_C57BL6NJ_G0025609.1 mouse_genomes_project 19 46577422 46789603 - MGP_C57BL6NJ_P0052415 9130011E15Rik protein_coding protein_coding MGP_C57BL6NJ_T0052718.1 MGP_C57BL6NJ_G0025709.1 mouse_genomes_project 19 62817040 62846603 - MGP_C57BL6NJ_P0052718 Eif3a protein_coding protein_coding MGP_C57BL6NJ_T0051812.1 MGP_C57BL6NJ_G0025401.1 mouse_genomes_project 19 21959911 21988627 + MGP_C57BL6NJ_P0051812 Klf9 protein_coding protein_coding MGP_C57BL6NJ_T0011740.1 MGP_C57BL6NJ_G0009825.1 mouse_genomes_project 19 29557947 29558228 + Gm24883 misc_RNA misc_RNA MGP_C57BL6NJ_T0051069.1 MGP_C57BL6NJ_G0025143.1 mouse_genomes_project 19 2943148 2951098 + MGP_C57BL6NJ_P0051069 Slc25a45 protein_coding protein_coding MGP_C57BL6NJ_T0051070.1 MGP_C57BL6NJ_G0025143.1 mouse_genomes_project 19 2943959 2945928 + MGP_C57BL6NJ_P0051070 Slc25a45 protein_coding protein_coding MGP_C57BL6NJ_T0051071.1 MGP_C57BL6NJ_G0025143.1 mouse_genomes_project 19 2943986 2950323 + MGP_C57BL6NJ_P0051071 Slc25a45 protein_coding protein_coding MGP_C57BL6NJ_T0051072.1 MGP_C57BL6NJ_G0025143.1 mouse_genomes_project 19 2943987 2949817 + MGP_C57BL6NJ_P0051072 Slc25a45 protein_coding protein_coding MGP_C57BL6NJ_T0051570.1 MGP_C57BL6NJ_G0025279.1 mouse_genomes_project 19 8673420 8678729 + MGP_C57BL6NJ_P0051570 Ptgdr2 protein_coding protein_coding MGP_C57BL6NJ_T0051281.1 MGP_C57BL6NJ_G0025182.1 mouse_genomes_project 19 4088752 4102635 - MGP_C57BL6NJ_P0051281 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051282.1 MGP_C57BL6NJ_G0025182.1 mouse_genomes_project 19 4089453 4102913 - MGP_C57BL6NJ_P0051282 protein_coding protein_coding MGP_C57BL6NJ_T0051283.1 MGP_C57BL6NJ_G0025182.1 mouse_genomes_project 19 4089766 4102965 - protein_coding processed_transcript MGP_C57BL6NJ_T0051284.1 MGP_C57BL6NJ_G0025182.1 mouse_genomes_project 19 4101041 4102919 - protein_coding retained_intron MGP_C57BL6NJ_T0051285.1 MGP_C57BL6NJ_G0025182.1 mouse_genomes_project 19 4101215 4102188 - MGP_C57BL6NJ_P0051285 protein_coding protein_coding MGP_C57BL6NJ_T0051752.1 MGP_C57BL6NJ_G0025381.1 mouse_genomes_project 19 15705098 15739963 - MGP_C57BL6NJ_P0051752 Gcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0051753.1 MGP_C57BL6NJ_G0025381.1 mouse_genomes_project 19 15705100 15720727 - MGP_C57BL6NJ_P0051753 Gcnt1 protein_coding protein_coding MGP_C57BL6NJ_T0051754.1 MGP_C57BL6NJ_G0025381.1 mouse_genomes_project 19 15713389 15739963 - Gcnt1 protein_coding retained_intron MGP_C57BL6NJ_T0051140.1 MGP_C57BL6NJ_G0025160.1 mouse_genomes_project 19 3196003 3207107 + MGP_C57BL6NJ_P0051140 Naaladl1 protein_coding protein_coding MGP_C57BL6NJ_T0013718.1 MGP_C57BL6NJ_G0011763.1 mouse_genomes_project 19 47537090 47538097 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0051074.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2964612 2984275 - MGP_C57BL6NJ_P0051074 Dpf2 protein_coding protein_coding MGP_C57BL6NJ_T0051075.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2966519 2974936 - Dpf2 protein_coding retained_intron MGP_C57BL6NJ_T0051076.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2966531 2984176 - MGP_C57BL6NJ_P0051076 Dpf2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051077.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2970927 2974045 - Dpf2 protein_coding retained_intron MGP_C57BL6NJ_T0051078.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2975750 2984181 - Dpf2 protein_coding retained_intron MGP_C57BL6NJ_T0051079.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2976729 2984173 - Dpf2 protein_coding retained_intron MGP_C57BL6NJ_T0051080.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2977140 2984414 - Dpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0051081.1 MGP_C57BL6NJ_G0025145.1 mouse_genomes_project 19 2983229 2984211 - Dpf2 protein_coding processed_transcript MGP_C57BL6NJ_T0051531.1 MGP_C57BL6NJ_G0025265.1 mouse_genomes_project 19 8280080 8286965 - MGP_C57BL6NJ_P0051531 Tmem138 protein_coding protein_coding MGP_C57BL6NJ_T0051645.1 MGP_C57BL6NJ_G0025305.1 mouse_genomes_project 19 9531166 9550482 + MGP_C57BL6NJ_P0051645 Oosp3 protein_coding protein_coding MGP_C57BL6NJ_T0051646.1 MGP_C57BL6NJ_G0025305.1 mouse_genomes_project 19 9531189 9550498 + MGP_C57BL6NJ_P0051646 Oosp3 protein_coding protein_coding MGP_C57BL6NJ_T0011745.1 MGP_C57BL6NJ_G0009830.1 mouse_genomes_project 19 39051119 39051239 + Gm25838 misc_RNA misc_RNA MGP_C57BL6NJ_T0052043.1 MGP_C57BL6NJ_G0025486.1 mouse_genomes_project 19 36263714 36352574 + MGP_C57BL6NJ_P0052043 Pcgf5 protein_coding protein_coding MGP_C57BL6NJ_T0052044.1 MGP_C57BL6NJ_G0025486.1 mouse_genomes_project 19 36299591 36352574 + MGP_C57BL6NJ_P0052044 Pcgf5 protein_coding protein_coding MGP_C57BL6NJ_T0052045.1 MGP_C57BL6NJ_G0025486.1 mouse_genomes_project 19 36300104 36352007 + MGP_C57BL6NJ_P0052045 Pcgf5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051499.1 MGP_C57BL6NJ_G0025252.1 mouse_genomes_project 19 7683133 7701255 + MGP_C57BL6NJ_P0051499 Fads3 protein_coding protein_coding MGP_C57BL6NJ_T0051595.1 MGP_C57BL6NJ_G0025290.1 mouse_genomes_project 19 9047091 9053839 - Ms4a5 protein_coding retained_intron MGP_C57BL6NJ_T0051596.1 MGP_C57BL6NJ_G0025290.1 mouse_genomes_project 19 9047719 9058209 - MGP_C57BL6NJ_P0051596 Ms4a5 protein_coding protein_coding MGP_C57BL6NJ_T0051597.1 MGP_C57BL6NJ_G0025290.1 mouse_genomes_project 19 9047719 9058269 - MGP_C57BL6NJ_P0051597 Ms4a5 protein_coding protein_coding MGP_C57BL6NJ_T0051598.1 MGP_C57BL6NJ_G0025290.1 mouse_genomes_project 19 9048014 9054050 - Ms4a5 protein_coding processed_transcript MGP_C57BL6NJ_T0051599.1 MGP_C57BL6NJ_G0025290.1 mouse_genomes_project 19 9051154 9058256 - MGP_C57BL6NJ_P0051599 Ms4a5 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050852.1 MGP_C57BL6NJ_G0025068.1 mouse_genomes_project 19 1062209 1068899 - MGP_C57BL6NJ_P0050852 Tbc1d10c protein_coding protein_coding MGP_C57BL6NJ_T0007263.1 MGP_C57BL6NJ_G0005962.1 mouse_genomes_project 19 40886725 40893571 + Gm27042 lincRNA lincRNA MGP_C57BL6NJ_T0051271.1 MGP_C57BL6NJ_G0025178.1 mouse_genomes_project 19 4004238 4015628 - MGP_C57BL6NJ_P0051271 Rps6ka4 protein_coding protein_coding MGP_C57BL6NJ_T0051371.1 MGP_C57BL6NJ_G0025211.1 mouse_genomes_project 19 5028119 5049657 - MGP_C57BL6NJ_P0051371 Slc22a26 protein_coding protein_coding MGP_C57BL6NJ_T0051372.1 MGP_C57BL6NJ_G0025211.1 mouse_genomes_project 19 5029058 5049746 - MGP_C57BL6NJ_P0051372 Slc22a26 protein_coding protein_coding MGP_C57BL6NJ_T0052261.1 MGP_C57BL6NJ_G0025558.1 mouse_genomes_project 19 42643725 42672616 + MGP_C57BL6NJ_P0052261 Golga7b protein_coding protein_coding MGP_C57BL6NJ_T0052262.1 MGP_C57BL6NJ_G0025558.1 mouse_genomes_project 19 42651706 42672616 + MGP_C57BL6NJ_P0052262 Golga7b protein_coding protein_coding MGP_C57BL6NJ_T0052494.1 MGP_C57BL6NJ_G0025634.1 mouse_genomes_project 19 47929755 47946947 - MGP_C57BL6NJ_P0052494 Pcgf6 protein_coding protein_coding MGP_C57BL6NJ_T0051532.1 MGP_C57BL6NJ_G0025266.1 mouse_genomes_project 19 8287056 8297714 + MGP_C57BL6NJ_P0051532 Cyb561a3 protein_coding protein_coding MGP_C57BL6NJ_T0051533.1 MGP_C57BL6NJ_G0025266.1 mouse_genomes_project 19 8287357 8299001 + MGP_C57BL6NJ_P0051533 Cyb561a3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051884.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27409755 27847682 - MGP_C57BL6NJ_P0051884 Glis3 protein_coding protein_coding MGP_C57BL6NJ_T0051885.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27413251 27481636 - Glis3 protein_coding processed_transcript MGP_C57BL6NJ_T0051886.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27413268 27847271 - MGP_C57BL6NJ_P0051886 Glis3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051887.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27413330 27453955 - Glis3 protein_coding processed_transcript MGP_C57BL6NJ_T0051888.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27413877 27704973 - Glis3 protein_coding retained_intron MGP_C57BL6NJ_T0051889.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27414855 27434789 - Glis3 protein_coding retained_intron MGP_C57BL6NJ_T0051890.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27504795 27847682 - MGP_C57BL6NJ_P0051890 Glis3 protein_coding protein_coding MGP_C57BL6NJ_T0051891.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27696399 27846295 - MGP_C57BL6NJ_P0051891 Glis3 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051892.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27696399 27832708 - MGP_C57BL6NJ_P0051892 Glis3 protein_coding protein_coding MGP_C57BL6NJ_T0051893.1 MGP_C57BL6NJ_G0025428.1 mouse_genomes_project 19 27696399 27846295 - MGP_C57BL6NJ_P0051893 Glis3 protein_coding protein_coding MGP_C57BL6NJ_T0052482.1 MGP_C57BL6NJ_G0025628.1 mouse_genomes_project 19 47529062 47534872 - MGP_C57BL6NJ_P0052482 Cyp17a1 protein_coding protein_coding MGP_C57BL6NJ_T0052483.1 MGP_C57BL6NJ_G0025628.1 mouse_genomes_project 19 47529984 47531411 - Cyp17a1 protein_coding retained_intron MGP_C57BL6NJ_T0052484.1 MGP_C57BL6NJ_G0025628.1 mouse_genomes_project 19 47532623 47533189 - Cyp17a1 protein_coding retained_intron MGP_C57BL6NJ_T0010516.1 MGP_C57BL6NJ_G0008601.1 mouse_genomes_project 19 6309376 6309452 - Mir5136 miRNA miRNA MGP_C57BL6NJ_T0050997.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2498744 2503910 + MGP_C57BL6NJ_P0050997 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0050998.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499086 2500840 + MGP_C57BL6NJ_P0050998 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0050999.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499459 2508208 + MGP_C57BL6NJ_P0050999 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051000.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499478 2504721 + Efemp2 protein_coding retained_intron MGP_C57BL6NJ_T0051001.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499511 2508208 + MGP_C57BL6NJ_P0051001 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051002.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499511 2507096 + MGP_C57BL6NJ_P0051002 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051003.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499518 2504588 + MGP_C57BL6NJ_P0051003 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051004.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499521 2508208 + MGP_C57BL6NJ_P0051004 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051005.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499548 2500240 + Efemp2 protein_coding retained_intron MGP_C57BL6NJ_T0051006.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499839 2504652 + MGP_C57BL6NJ_P0051006 Efemp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051007.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2499891 2508130 + MGP_C57BL6NJ_P0051007 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051008.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2500076 2506434 + MGP_C57BL6NJ_P0051008 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051009.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2506399 2507271 + MGP_C57BL6NJ_P0051009 Efemp2 protein_coding protein_coding MGP_C57BL6NJ_T0051010.1 MGP_C57BL6NJ_G0025123.1 mouse_genomes_project 19 2506477 2508014 + MGP_C57BL6NJ_P0051010 Efemp2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050829.1 MGP_C57BL6NJ_G0025062.1 mouse_genomes_project 19 1010550 1017456 - MGP_C57BL6NJ_P0050829 Cabp4 protein_coding protein_coding MGP_C57BL6NJ_T0051527.1 MGP_C57BL6NJ_G0025264.1 mouse_genomes_project 19 8237418 8261472 - MGP_C57BL6NJ_P0051527 Tmem216 protein_coding protein_coding MGP_C57BL6NJ_T0051528.1 MGP_C57BL6NJ_G0025264.1 mouse_genomes_project 19 8256190 8261497 - MGP_C57BL6NJ_P0051528 Tmem216 protein_coding protein_coding MGP_C57BL6NJ_T0051529.1 MGP_C57BL6NJ_G0025264.1 mouse_genomes_project 19 8256227 8261487 - MGP_C57BL6NJ_P0051529 Tmem216 protein_coding protein_coding MGP_C57BL6NJ_T0051530.1 MGP_C57BL6NJ_G0025264.1 mouse_genomes_project 19 8260482 8261487 - Tmem216 protein_coding retained_intron MGP_C57BL6NJ_T0101454.1 MGP_C57BL6NJ_G0039500.1 mouse_genomes_project 19 43127331 43127457 - Gm25216 snoRNA snoRNA MGP_C57BL6NJ_T0010524.1 MGP_C57BL6NJ_G0008609.1 mouse_genomes_project 19 16306905 16306998 - Gm23063 miRNA miRNA MGP_C57BL6NJ_T0052677.1 MGP_C57BL6NJ_G0025687.1 mouse_genomes_project 19 59158719 59190522 + MGP_C57BL6NJ_P0052677 Fam160b1 protein_coding protein_coding MGP_C57BL6NJ_T0051679.1 MGP_C57BL6NJ_G0025332.1 mouse_genomes_project 19 10625825 10655082 + MGP_C57BL6NJ_P0051679 Gm4952 protein_coding protein_coding MGP_C57BL6NJ_T0051680.1 MGP_C57BL6NJ_G0025332.1 mouse_genomes_project 19 10625867 10656460 + MGP_C57BL6NJ_P0051680 Gm4952 protein_coding protein_coding MGP_C57BL6NJ_T0051326.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4486753 4557580 - MGP_C57BL6NJ_P0051326 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051327.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4486756 4558218 - MGP_C57BL6NJ_P0051327 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051328.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488093 4558198 - MGP_C57BL6NJ_P0051328 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051329.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488119 4557551 - MGP_C57BL6NJ_P0051329 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051330.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488209 4558203 - MGP_C57BL6NJ_P0051330 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051331.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488209 4494411 - MGP_C57BL6NJ_P0051331 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051332.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488212 4489455 - Mark2 protein_coding retained_intron MGP_C57BL6NJ_T0051333.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488450 4557580 - MGP_C57BL6NJ_P0051333 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051334.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488640 4494426 - MGP_C57BL6NJ_P0051334 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051335.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4488805 4494539 - MGP_C57BL6NJ_P0051335 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051336.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4489862 4494878 - MGP_C57BL6NJ_P0051336 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051337.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4490520 4493302 - MGP_C57BL6NJ_P0051337 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051338.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4492397 4494471 - MGP_C57BL6NJ_P0051338 Mark2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051339.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4494497 4496139 - Mark2 protein_coding retained_intron MGP_C57BL6NJ_T0051340.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4496117 4498724 - Mark2 protein_coding retained_intron MGP_C57BL6NJ_T0051341.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4497180 4558259 - MGP_C57BL6NJ_P0051341 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051342.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4498697 4558003 - MGP_C57BL6NJ_P0051342 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051343.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4501699 4558041 - MGP_C57BL6NJ_P0051343 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051344.1 MGP_C57BL6NJ_G0025202.1 mouse_genomes_project 19 4502028 4558211 - MGP_C57BL6NJ_P0051344 Mark2 protein_coding protein_coding MGP_C57BL6NJ_T0051722.1 MGP_C57BL6NJ_G0025362.1 mouse_genomes_project 19 11822221 11823181 + MGP_C57BL6NJ_P0051722 Olfr1491 protein_coding protein_coding MGP_C57BL6NJ_T0018165.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8460100 8509478 + A430093F15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018166.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8460104 8509469 + A430093F15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018167.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8460113 8509112 + A430093F15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018168.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8465714 8480120 + A430093F15Rik processed_transcript retained_intron MGP_C57BL6NJ_T0018169.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8505349 8509474 + A430093F15Rik processed_transcript lincRNA MGP_C57BL6NJ_T0018170.1 MGP_C57BL6NJ_G0015774.1 mouse_genomes_project 19 8508786 8509471 + A430093F15Rik processed_transcript retained_intron MGP_C57BL6NJ_T0050830.1 MGP_C57BL6NJ_G0025063.1 mouse_genomes_project 19 1017645 1023575 + MGP_C57BL6NJ_P0050830 Gpr152 protein_coding protein_coding MGP_C57BL6NJ_T0051813.1 MGP_C57BL6NJ_G0025402.1 mouse_genomes_project 19 22028091 22109490 - MGP_C57BL6NJ_P0051813 Smc5 protein_coding protein_coding MGP_C57BL6NJ_T0051814.1 MGP_C57BL6NJ_G0025402.1 mouse_genomes_project 19 22028101 22036808 - MGP_C57BL6NJ_P0051814 Smc5 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0004024.1 MGP_C57BL6NJ_G0003591.1 mouse_genomes_project 19 46504183 46507715 + Gm15491 antisense antisense MGP_C57BL6NJ_T0052361.1 MGP_C57BL6NJ_G0025592.1 mouse_genomes_project 19 45614645 45632189 + MGP_C57BL6NJ_P0052361 Sema4g protein_coding protein_coding MGP_C57BL6NJ_T0052362.1 MGP_C57BL6NJ_G0025592.1 mouse_genomes_project 19 45614835 45632189 + MGP_C57BL6NJ_P0052362 Sema4g protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052363.1 MGP_C57BL6NJ_G0025592.1 mouse_genomes_project 19 45614888 45632194 + MGP_C57BL6NJ_P0052363 Sema4g protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052364.1 MGP_C57BL6NJ_G0025592.1 mouse_genomes_project 19 45617680 45632186 + MGP_C57BL6NJ_P0052364 Sema4g protein_coding protein_coding MGP_C57BL6NJ_T0004018.1 MGP_C57BL6NJ_G0003587.1 mouse_genomes_project 19 42943826 42971875 - Gm16541 antisense antisense MGP_C57BL6NJ_T0004019.1 MGP_C57BL6NJ_G0003587.1 mouse_genomes_project 19 42943832 42971862 - Gm16541 antisense antisense MGP_C57BL6NJ_T0004020.1 MGP_C57BL6NJ_G0003587.1 mouse_genomes_project 19 42971273 42971875 - Gm16541 antisense antisense MGP_C57BL6NJ_T0100153.1 MGP_C57BL6NJ_G0038199.1 mouse_genomes_project 19 16274616 16274719 - Gm22880 snRNA snRNA MGP_C57BL6NJ_T0051346.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4642629 4650909 + MGP_C57BL6NJ_P0051346 2700081O15Rik protein_coding protein_coding MGP_C57BL6NJ_T0051347.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4643721 4646093 + 2700081O15Rik protein_coding retained_intron MGP_C57BL6NJ_T0051348.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4645094 4648343 + MGP_C57BL6NJ_P0051348 2700081O15Rik protein_coding protein_coding MGP_C57BL6NJ_T0051349.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4645413 4647677 + MGP_C57BL6NJ_P0051349 2700081O15Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051350.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4645423 4647329 + MGP_C57BL6NJ_P0051350 2700081O15Rik protein_coding protein_coding MGP_C57BL6NJ_T0051351.1 MGP_C57BL6NJ_G0025204.1 mouse_genomes_project 19 4646032 4650545 + 2700081O15Rik protein_coding retained_intron MGP_C57BL6NJ_T0050786.1 MGP_C57BL6NJ_G0025053.1 mouse_genomes_project 19 830668 834372 + Doc2g protein_coding retained_intron MGP_C57BL6NJ_T0050787.1 MGP_C57BL6NJ_G0025053.1 mouse_genomes_project 19 830672 833136 + Doc2g protein_coding retained_intron MGP_C57BL6NJ_T0050788.1 MGP_C57BL6NJ_G0025053.1 mouse_genomes_project 19 830683 834373 + MGP_C57BL6NJ_P0050788 Doc2g protein_coding protein_coding MGP_C57BL6NJ_T0050789.1 MGP_C57BL6NJ_G0025053.1 mouse_genomes_project 19 831047 833501 + Doc2g protein_coding retained_intron MGP_C57BL6NJ_T0100167.1 MGP_C57BL6NJ_G0038213.1 mouse_genomes_project 19 52488955 52489062 - Gm25644 snRNA snRNA MGP_C57BL6NJ_T0051535.1 MGP_C57BL6NJ_G0025268.1 mouse_genomes_project 19 8314790 8338979 + MGP_C57BL6NJ_P0051535 Ddb1 protein_coding protein_coding MGP_C57BL6NJ_T0052001.1 MGP_C57BL6NJ_G0025463.1 mouse_genomes_project 19 33054220 33308874 - MGP_C57BL6NJ_P0052001 protein_coding protein_coding MGP_C57BL6NJ_T0051700.1 MGP_C57BL6NJ_G0025340.1 mouse_genomes_project 19 10903544 10904574 + MGP_C57BL6NJ_P0051700 Olfr1444 protein_coding protein_coding MGP_C57BL6NJ_T0051379.1 MGP_C57BL6NJ_G0025216.1 mouse_genomes_project 19 5994675 6005012 + MGP_C57BL6NJ_P0051379 Slc22a6 protein_coding protein_coding MGP_C57BL6NJ_T0051050.1 MGP_C57BL6NJ_G0025135.1 mouse_genomes_project 19 2740695 2754919 + MGP_C57BL6NJ_P0051050 Map3k11 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051585.1 MGP_C57BL6NJ_G0025286.1 mouse_genomes_project 19 8919844 8949367 - MGP_C57BL6NJ_P0051585 1700025F22Rik protein_coding protein_coding MGP_C57BL6NJ_T0051586.1 MGP_C57BL6NJ_G0025286.1 mouse_genomes_project 19 8919844 8943226 - MGP_C57BL6NJ_P0051586 1700025F22Rik protein_coding protein_coding MGP_C57BL6NJ_T0051587.1 MGP_C57BL6NJ_G0025286.1 mouse_genomes_project 19 8919844 8949353 - MGP_C57BL6NJ_P0051587 1700025F22Rik protein_coding protein_coding MGP_C57BL6NJ_T0051588.1 MGP_C57BL6NJ_G0025286.1 mouse_genomes_project 19 8919844 8949353 - MGP_C57BL6NJ_P0051588 1700025F22Rik protein_coding protein_coding MGP_C57BL6NJ_T0050940.1 MGP_C57BL6NJ_G0025094.1 mouse_genomes_project 19 1871138 1897154 - MGP_C57BL6NJ_P0050940 Dpp3 protein_coding protein_coding MGP_C57BL6NJ_T0010529.1 MGP_C57BL6NJ_G0008614.1 mouse_genomes_project 19 29550895 29550972 - Gm24108 miRNA miRNA MGP_C57BL6NJ_T0051964.1 MGP_C57BL6NJ_G0025449.1 mouse_genomes_project 19 29370084 29453194 - MGP_C57BL6NJ_P0051964 Gldc protein_coding protein_coding MGP_C57BL6NJ_T0052385.1 MGP_C57BL6NJ_G0025603.1 mouse_genomes_project 19 46296481 46314177 + MGP_C57BL6NJ_P0052385 Gm17018 protein_coding protein_coding MGP_C57BL6NJ_T0052387.1 MGP_C57BL6NJ_G0025603.1 mouse_genomes_project 19 46314174 46315661 + Gm17018 protein_coding antisense MGP_C57BL6NJ_T0099233.1 MGP_C57BL6NJ_G0037297.1 mouse_genomes_project 19 2890547 2890603 - Gm27702 sRNA sRNA MGP_C57BL6NJ_T0018173.1 MGP_C57BL6NJ_G0015776.1 mouse_genomes_project 19 10610044 10622418 - A330040F15Rik processed_transcript processed_transcript MGP_C57BL6NJ_T0010510.1 MGP_C57BL6NJ_G0008595.1 mouse_genomes_project 19 3693104 3693230 + Gm26460 miRNA miRNA MGP_C57BL6NJ_T0050982.1 MGP_C57BL6NJ_G0025116.1 mouse_genomes_project 19 2409260 2413613 - MGP_C57BL6NJ_P0050982 Tsga10ip protein_coding protein_coding MGP_C57BL6NJ_T0051742.1 MGP_C57BL6NJ_G0025375.1 mouse_genomes_project 19 14220305 14249044 - MGP_C57BL6NJ_P0051742 Cep78 protein_coding protein_coding MGP_C57BL6NJ_T0018119.1 MGP_C57BL6NJ_G0015765.1 mouse_genomes_project 19 584708 646688 - Gm16066 processed_transcript processed_transcript MGP_C57BL6NJ_T0100152.1 MGP_C57BL6NJ_G0038198.1 mouse_genomes_project 19 13936504 13936611 + Gm24319 snRNA snRNA MGP_C57BL6NJ_T0007283.1 MGP_C57BL6NJ_G0005976.1 mouse_genomes_project 19 57296105 57364928 - lincRNA lincRNA MGP_C57BL6NJ_T0010552.1 MGP_C57BL6NJ_G0008637.1 mouse_genomes_project 19 60845744 60845831 - Mir3086 miRNA miRNA MGP_C57BL6NJ_T0101448.1 MGP_C57BL6NJ_G0039494.1 mouse_genomes_project 19 23911811 23911943 - Gm23658 snoRNA snoRNA MGP_C57BL6NJ_T0051926.1 MGP_C57BL6NJ_G0025439.1 mouse_genomes_project 19 28595292 28617586 + MGP_C57BL6NJ_P0051926 Cd274 protein_coding protein_coding MGP_C57BL6NJ_T0051820.1 MGP_C57BL6NJ_G0025408.1 mouse_genomes_project 19 22857458 22924470 - MGP_C57BL6NJ_P0051820 Fam189a2 protein_coding protein_coding MGP_C57BL6NJ_T0052501.1 MGP_C57BL6NJ_G0025640.1 mouse_genomes_project 19 48050305 48056359 - MGP_C57BL6NJ_P0052501 Calhm3 protein_coding protein_coding MGP_C57BL6NJ_T0052041.1 MGP_C57BL6NJ_G0025484.1 mouse_genomes_project 19 35948573 35970726 + MGP_C57BL6NJ_P0052041 Rpp30 protein_coding protein_coding MGP_C57BL6NJ_T0052293.1 MGP_C57BL6NJ_G0025569.1 mouse_genomes_project 19 44169999 44216428 + MGP_C57BL6NJ_P0052293 Entpd7 protein_coding protein_coding MGP_C57BL6NJ_T0052294.1 MGP_C57BL6NJ_G0025569.1 mouse_genomes_project 19 44170136 44173182 + Entpd7 protein_coding retained_intron MGP_C57BL6NJ_T0052295.1 MGP_C57BL6NJ_G0025569.1 mouse_genomes_project 19 44170167 44205269 + Entpd7 protein_coding retained_intron MGP_C57BL6NJ_T0052296.1 MGP_C57BL6NJ_G0025569.1 mouse_genomes_project 19 44193272 44199007 + Entpd7 protein_coding retained_intron MGP_C57BL6NJ_T0052297.1 MGP_C57BL6NJ_G0025569.1 mouse_genomes_project 19 44209061 44210831 + Entpd7 protein_coding retained_intron MGP_C57BL6NJ_T0007248.1 MGP_C57BL6NJ_G0005952.1 mouse_genomes_project 19 27235474 27236383 + Gm28228 lincRNA lincRNA MGP_C57BL6NJ_T0018120.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999576 1007411 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018121.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999601 1006852 + Tmem134 processed_transcript retained_intron MGP_C57BL6NJ_T0018122.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999601 1006853 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018123.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999601 1006570 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018124.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999601 1006853 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018125.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999601 1006853 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018126.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999602 1007411 + Tmem134 processed_transcript retained_intron MGP_C57BL6NJ_T0018127.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999602 1007431 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018128.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999602 1007433 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018129.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999617 1006853 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018130.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999621 1006861 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018131.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999629 1006856 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018132.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999631 1001381 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018133.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999631 1006853 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018134.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 999671 1006858 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0018135.1 MGP_C57BL6NJ_G0015766.1 mouse_genomes_project 19 1001213 1006383 + Tmem134 processed_transcript processed_transcript MGP_C57BL6NJ_T0010504.1 MGP_C57BL6NJ_G0008589.1 mouse_genomes_project 19 2194362 2194461 - Gm27468 miRNA miRNA MGP_C57BL6NJ_T0052742.1 MGP_C57BL6NJ_G0025716.1 mouse_genomes_project 19 63309632 63313066 - MGP_C57BL6NJ_P0052742 Csf2ra protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052743.1 MGP_C57BL6NJ_G0025716.1 mouse_genomes_project 19 63309632 63314153 - MGP_C57BL6NJ_P0052743 Csf2ra protein_coding protein_coding MGP_C57BL6NJ_T0051720.1 MGP_C57BL6NJ_G0025360.1 mouse_genomes_project 19 11765296 11766238 + MGP_C57BL6NJ_P0051720 Olfr1489 protein_coding protein_coding MGP_C57BL6NJ_T0051210.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468308 3482649 + MGP_C57BL6NJ_P0051210 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051211.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468337 3481822 + MGP_C57BL6NJ_P0051211 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051212.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468428 3481131 + MGP_C57BL6NJ_P0051212 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051213.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468540 3470574 + Sf1 protein_coding retained_intron MGP_C57BL6NJ_T0051214.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468540 3481821 + MGP_C57BL6NJ_P0051214 Sf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051215.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468540 3481815 + MGP_C57BL6NJ_P0051215 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051216.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468581 3473403 + Sf1 protein_coding retained_intron MGP_C57BL6NJ_T0051217.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3468812 3476812 + MGP_C57BL6NJ_P0051217 Sf1 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051218.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3469175 3477238 + MGP_C57BL6NJ_P0051218 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051219.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3474737 3476711 + Sf1 protein_coding processed_transcript MGP_C57BL6NJ_T0051220.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3475330 3476313 + Sf1 protein_coding retained_intron MGP_C57BL6NJ_T0051221.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3477031 3477540 + Sf1 protein_coding retained_intron MGP_C57BL6NJ_T0051222.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3478239 3481273 + MGP_C57BL6NJ_P0051222 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051223.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3478628 3481131 + MGP_C57BL6NJ_P0051223 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0051224.1 MGP_C57BL6NJ_G0025173.1 mouse_genomes_project 19 3478747 3480399 + MGP_C57BL6NJ_P0051224 Sf1 protein_coding protein_coding MGP_C57BL6NJ_T0010530.1 MGP_C57BL6NJ_G0008615.1 mouse_genomes_project 19 32724199 32724289 + Mir3970 miRNA miRNA MGP_C57BL6NJ_T0052453.1 MGP_C57BL6NJ_G0025617.1 mouse_genomes_project 19 47134669 47143311 + MGP_C57BL6NJ_P0052453 Nfkb2 protein_coding protein_coding MGP_C57BL6NJ_T0052454.1 MGP_C57BL6NJ_G0025617.1 mouse_genomes_project 19 47135627 47143311 + MGP_C57BL6NJ_P0052454 Nfkb2 protein_coding protein_coding MGP_C57BL6NJ_T0052083.1 MGP_C57BL6NJ_G0025494.1 mouse_genomes_project 19 37275744 37378863 - MGP_C57BL6NJ_P0052083 Ide protein_coding protein_coding MGP_C57BL6NJ_T0052084.1 MGP_C57BL6NJ_G0025494.1 mouse_genomes_project 19 37277436 37314746 - Ide protein_coding processed_transcript MGP_C57BL6NJ_T0052085.1 MGP_C57BL6NJ_G0025494.1 mouse_genomes_project 19 37287589 37297884 - Ide protein_coding retained_intron MGP_C57BL6NJ_T0052086.1 MGP_C57BL6NJ_G0025494.1 mouse_genomes_project 19 37310700 37320927 - Ide protein_coding processed_transcript MGP_C57BL6NJ_T0052087.1 MGP_C57BL6NJ_G0025494.1 mouse_genomes_project 19 37311004 37349919 - Ide protein_coding retained_intron MGP_C57BL6NJ_T0051022.1 MGP_C57BL6NJ_G0025125.1 mouse_genomes_project 19 2517824 2521369 + MGP_C57BL6NJ_P0051022 Cfl1 protein_coding protein_coding MGP_C57BL6NJ_T0051617.1 MGP_C57BL6NJ_G0025296.1 mouse_genomes_project 19 9270149 9288338 + MGP_C57BL6NJ_P0051617 Ms4a6c protein_coding protein_coding MGP_C57BL6NJ_T0051618.1 MGP_C57BL6NJ_G0025296.1 mouse_genomes_project 19 9270208 9273523 + Ms4a6c protein_coding retained_intron MGP_C57BL6NJ_T0051918.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28575065 28586212 - MGP_C57BL6NJ_P0051918 Plgrkt protein_coding protein_coding MGP_C57BL6NJ_T0051919.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28576865 28578334 - Plgrkt protein_coding retained_intron MGP_C57BL6NJ_T0051920.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28577502 28589245 - MGP_C57BL6NJ_P0051920 Plgrkt protein_coding protein_coding MGP_C57BL6NJ_T0051921.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28577596 28589662 - MGP_C57BL6NJ_P0051921 Plgrkt protein_coding protein_coding MGP_C57BL6NJ_T0051922.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28586190 28595146 - MGP_C57BL6NJ_P0051922 Plgrkt protein_coding protein_coding MGP_C57BL6NJ_T0051923.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28588691 28591737 - Plgrkt protein_coding processed_transcript MGP_C57BL6NJ_T0051924.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28589926 28592300 - Plgrkt protein_coding processed_transcript MGP_C57BL6NJ_T0051925.1 MGP_C57BL6NJ_G0025438.1 mouse_genomes_project 19 28591912 28595228 - Plgrkt protein_coding processed_transcript MGP_C57BL6NJ_T0007239.1 MGP_C57BL6NJ_G0005946.1 mouse_genomes_project 19 14249144 14274881 + C130060C02Rik lincRNA lincRNA MGP_C57BL6NJ_T0052500.1 MGP_C57BL6NJ_G0025639.1 mouse_genomes_project 19 48039771 48042885 - MGP_C57BL6NJ_P0052500 Calhm1 protein_coding protein_coding MGP_C57BL6NJ_T0007279.1 MGP_C57BL6NJ_G0005974.1 mouse_genomes_project 19 54881717 54908059 - Mirt1 lincRNA lincRNA MGP_C57BL6NJ_T0007280.1 MGP_C57BL6NJ_G0005974.1 mouse_genomes_project 19 54884519 54887820 - Mirt1 lincRNA lincRNA MGP_C57BL6NJ_T0007281.1 MGP_C57BL6NJ_G0005974.1 mouse_genomes_project 19 54893582 54897325 - Mirt1 lincRNA lincRNA MGP_C57BL6NJ_T0100164.1 MGP_C57BL6NJ_G0038210.1 mouse_genomes_project 19 45566590 45566697 + Gm25482 snRNA snRNA MGP_C57BL6NJ_T0101446.1 MGP_C57BL6NJ_G0039492.1 mouse_genomes_project 19 20996995 20997093 - Gm22506 snoRNA snoRNA MGP_C57BL6NJ_T0050964.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2092007 2102821 - MGP_C57BL6NJ_P0050964 Klc2 protein_coding protein_coding MGP_C57BL6NJ_T0050965.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2092007 2102561 - MGP_C57BL6NJ_P0050965 Klc2 protein_coding protein_coding MGP_C57BL6NJ_T0050966.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2092007 2102558 - MGP_C57BL6NJ_P0050966 Klc2 protein_coding protein_coding MGP_C57BL6NJ_T0050967.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2092009 2102559 - MGP_C57BL6NJ_P0050967 Klc2 protein_coding protein_coding MGP_C57BL6NJ_T0050968.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2092430 2093742 - Klc2 protein_coding retained_intron MGP_C57BL6NJ_T0050969.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2093688 2095707 - Klc2 protein_coding retained_intron MGP_C57BL6NJ_T0050970.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2094628 2096246 - Klc2 protein_coding retained_intron MGP_C57BL6NJ_T0050971.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2097771 2098272 - Klc2 protein_coding retained_intron MGP_C57BL6NJ_T0050972.1 MGP_C57BL6NJ_G0025107.1 mouse_genomes_project 19 2098071 2101847 - MGP_C57BL6NJ_P0050972 Klc2 protein_coding protein_coding MGP_C57BL6NJ_T0051817.1 MGP_C57BL6NJ_G0025405.1 mouse_genomes_project 19 22556073 22593392 + MGP_C57BL6NJ_P0051817 Ptar1 protein_coding protein_coding MGP_C57BL6NJ_T0101457.1 MGP_C57BL6NJ_G0039503.1 mouse_genomes_project 19 48667964 48668080 + Gm26085 snoRNA snoRNA MGP_C57BL6NJ_T0050800.1 MGP_C57BL6NJ_G0025055.1 mouse_genomes_project 19 879767 891945 - MGP_C57BL6NJ_P0050800 protein_coding protein_coding MGP_C57BL6NJ_T0051441.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6249467 6260589 + MGP_C57BL6NJ_P0051441 Bscl2 protein_coding protein_coding MGP_C57BL6NJ_T0051442.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6249687 6252244 + Bscl2 protein_coding processed_transcript MGP_C57BL6NJ_T0051443.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6249729 6260573 + MGP_C57BL6NJ_P0051443 Bscl2 protein_coding protein_coding MGP_C57BL6NJ_T0051444.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6251328 6260572 + MGP_C57BL6NJ_P0051444 Bscl2 protein_coding protein_coding MGP_C57BL6NJ_T0051445.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6251373 6260573 + Bscl2 protein_coding retained_intron MGP_C57BL6NJ_T0051446.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6251390 6260544 + MGP_C57BL6NJ_P0051446 Bscl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051447.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6252519 6260572 + MGP_C57BL6NJ_P0051447 Bscl2 protein_coding protein_coding MGP_C57BL6NJ_T0051448.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6252535 6260572 + Bscl2 protein_coding retained_intron MGP_C57BL6NJ_T0051449.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6252535 6260572 + Bscl2 protein_coding retained_intron MGP_C57BL6NJ_T0051450.1 MGP_C57BL6NJ_G0025229.1 mouse_genomes_project 19 6258190 6260529 + MGP_C57BL6NJ_P0051450 Bscl2 protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052030.1 MGP_C57BL6NJ_G0025480.1 mouse_genomes_project 19 34431994 34512473 - MGP_C57BL6NJ_P0052030 Slc16a12 protein_coding protein_coding MGP_C57BL6NJ_T0050980.1 MGP_C57BL6NJ_G0025114.1 mouse_genomes_project 19 2384048 2388747 + MGP_C57BL6NJ_P0050980 Eif1ad protein_coding protein_coding MGP_C57BL6NJ_T0051803.1 MGP_C57BL6NJ_G0025398.1 mouse_genomes_project 19 20372252 20403933 + MGP_C57BL6NJ_P0051803 Abhd17b protein_coding protein_coding MGP_C57BL6NJ_T0010554.1 MGP_C57BL6NJ_G0008639.1 mouse_genomes_project 19 62830252 62830321 - Mir3084-2 miRNA miRNA MGP_C57BL6NJ_T0051286.1 MGP_C57BL6NJ_G0025183.1 mouse_genomes_project 19 4103577 4106532 - MGP_C57BL6NJ_P0051286 Tex40 protein_coding protein_coding MGP_C57BL6NJ_T0007234.1 MGP_C57BL6NJ_G0005941.1 mouse_genomes_project 19 8076903 8079519 - Gm26859 lincRNA lincRNA MGP_C57BL6NJ_T0101453.1 MGP_C57BL6NJ_G0039499.1 mouse_genomes_project 19 38152596 38152721 + Gm23300 snoRNA snoRNA MGP_C57BL6NJ_T0052021.1 MGP_C57BL6NJ_G0025474.1 mouse_genomes_project 19 34249435 34278705 + MGP_C57BL6NJ_P0052021 Ifit2 protein_coding protein_coding MGP_C57BL6NJ_T0052022.1 MGP_C57BL6NJ_G0025474.1 mouse_genomes_project 19 34249451 34281932 + MGP_C57BL6NJ_P0052022 Ifit2 protein_coding protein_coding MGP_C57BL6NJ_T0051536.1 MGP_C57BL6NJ_G0025269.1 mouse_genomes_project 19 8344350 8378682 + MGP_C57BL6NJ_P0051536 Vwce protein_coding protein_coding MGP_C57BL6NJ_T0052150.1 MGP_C57BL6NJ_G0025523.1 mouse_genomes_project 19 40265088 40313971 - MGP_C57BL6NJ_P0052150 Cyp2c54 protein_coding protein_coding MGP_C57BL6NJ_T0013689.1 MGP_C57BL6NJ_G0011734.1 mouse_genomes_project 19 4918660 4919167 + processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0101442.1 MGP_C57BL6NJ_G0039488.1 mouse_genomes_project 19 9788548 9788682 - Gm22272 snoRNA snoRNA MGP_C57BL6NJ_T0051729.1 MGP_C57BL6NJ_G0025369.1 mouse_genomes_project 19 11956307 11957255 - MGP_C57BL6NJ_P0051729 Olfr1501 protein_coding protein_coding MGP_C57BL6NJ_T0052707.1 MGP_C57BL6NJ_G0025703.1 mouse_genomes_project 19 61420387 61427434 + MGP_C57BL6NJ_P0052707 Emx2 protein_coding protein_coding MGP_C57BL6NJ_T0052708.1 MGP_C57BL6NJ_G0025703.1 mouse_genomes_project 19 61421559 61427430 + MGP_C57BL6NJ_P0052708 Emx2 protein_coding protein_coding MGP_C57BL6NJ_T0052709.1 MGP_C57BL6NJ_G0025703.1 mouse_genomes_project 19 61424842 61426256 + Emx2 protein_coding processed_transcript MGP_C57BL6NJ_T0018188.1 MGP_C57BL6NJ_G0015782.1 mouse_genomes_project 19 47091059 47094190 - Gm16726 processed_transcript processed_transcript MGP_C57BL6NJ_T0099067.1 MGP_C57BL6NJ_G0037131.1 mouse_genomes_project 19 49252188 49252299 - Gm23857 rRNA rRNA MGP_C57BL6NJ_T0051794.1 MGP_C57BL6NJ_G0025396.1 mouse_genomes_project 19 20266296 20268280 + MGP_C57BL6NJ_P0051794 Gm3443 protein_coding protein_coding MGP_C57BL6NJ_T0101440.1 MGP_C57BL6NJ_G0039486.1 mouse_genomes_project 19 6309215 6309363 - Snora57 snoRNA snoRNA MGP_C57BL6NJ_T0052693.1 MGP_C57BL6NJ_G0025694.1 mouse_genomes_project 19 60678555 60697650 + MGP_C57BL6NJ_P0052693 Pnliprp2 protein_coding protein_coding MGP_C57BL6NJ_T0101438.1 MGP_C57BL6NJ_G0039484.1 mouse_genomes_project 19 6114319 6114386 + Gm23246 snoRNA snoRNA MGP_C57BL6NJ_T0052714.1 MGP_C57BL6NJ_G0025707.1 mouse_genomes_project 19 62568712 62630017 - MGP_C57BL6NJ_P0052714 Cacul1 protein_coding protein_coding MGP_C57BL6NJ_T0052715.1 MGP_C57BL6NJ_G0025707.1 mouse_genomes_project 19 62568712 62630017 - MGP_C57BL6NJ_P0052715 Cacul1 protein_coding protein_coding MGP_C57BL6NJ_T0052716.1 MGP_C57BL6NJ_G0025707.1 mouse_genomes_project 19 62568712 62630017 - MGP_C57BL6NJ_P0052716 Cacul1 protein_coding protein_coding MGP_C57BL6NJ_T0051308.1 MGP_C57BL6NJ_G0025192.1 mouse_genomes_project 19 4181858 4185901 - MGP_C57BL6NJ_P0051308 Nudt22 protein_coding protein_coding MGP_C57BL6NJ_T0051309.1 MGP_C57BL6NJ_G0025192.1 mouse_genomes_project 19 4181858 4185821 - MGP_C57BL6NJ_P0051309 Nudt22 protein_coding protein_coding MGP_C57BL6NJ_T0051310.1 MGP_C57BL6NJ_G0025192.1 mouse_genomes_project 19 4181859 4184669 - Nudt22 protein_coding retained_intron MGP_C57BL6NJ_T0052416.1 MGP_C57BL6NJ_G0025610.1 mouse_genomes_project 19 46794348 46797044 + MGP_C57BL6NJ_P0052416 Hps6 protein_coding protein_coding MGP_C57BL6NJ_T0051750.1 MGP_C57BL6NJ_G0025380.1 mouse_genomes_project 19 15316113 15596039 + MGP_C57BL6NJ_P0051750 Prune2 protein_coding protein_coding MGP_C57BL6NJ_T0051751.1 MGP_C57BL6NJ_G0025380.1 mouse_genomes_project 19 15504798 15596048 + MGP_C57BL6NJ_P0051751 Prune2 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052527.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48696437 48814528 - MGP_C57BL6NJ_P0052527 Cfap43 protein_coding protein_coding MGP_C57BL6NJ_T0052528.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48696482 48722622 - Cfap43 protein_coding processed_transcript MGP_C57BL6NJ_T0052529.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48696482 48722622 - Cfap43 protein_coding processed_transcript MGP_C57BL6NJ_T0052530.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48711557 48722630 - Cfap43 protein_coding processed_transcript MGP_C57BL6NJ_T0052531.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48748280 48903574 - Cfap43 protein_coding retained_intron MGP_C57BL6NJ_T0052532.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48762956 48782782 - Cfap43 protein_coding processed_transcript MGP_C57BL6NJ_T0052533.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48798048 48814507 - Cfap43 protein_coding retained_intron MGP_C57BL6NJ_T0052540.1 MGP_C57BL6NJ_G0025648.1 mouse_genomes_project 19 48875970 48903586 - MGP_C57BL6NJ_P0052540 Cfap43 protein_coding protein_coding MGP_C57BL6NJ_T0004015.1 MGP_C57BL6NJ_G0003585.1 mouse_genomes_project 19 38403409 38420678 - Gm42723 antisense antisense MGP_C57BL6NJ_T0004016.1 MGP_C57BL6NJ_G0003585.1 mouse_genomes_project 19 38419619 38420663 - Gm42723 antisense antisense MGP_C57BL6NJ_T0051954.1 MGP_C57BL6NJ_G0025447.1 mouse_genomes_project 19 29272063 29274294 + MGP_C57BL6NJ_P0051954 Trpd52l3 protein_coding protein_coding MGP_C57BL6NJ_T0050719.1 MGP_C57BL6NJ_G0025039.1 mouse_genomes_project 19 203484 328695 - MGP_C57BL6NJ_P0050719 Ppp6r3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050720.1 MGP_C57BL6NJ_G0025039.1 mouse_genomes_project 19 203488 328610 - MGP_C57BL6NJ_P0050720 Ppp6r3 protein_coding protein_coding MGP_C57BL6NJ_T0050721.1 MGP_C57BL6NJ_G0025039.1 mouse_genomes_project 19 203488 328610 - MGP_C57BL6NJ_P0050721 Ppp6r3 protein_coding protein_coding MGP_C57BL6NJ_T0050722.1 MGP_C57BL6NJ_G0025039.1 mouse_genomes_project 19 203488 328610 - MGP_C57BL6NJ_P0050722 Ppp6r3 protein_coding protein_coding MGP_C57BL6NJ_T0052380.1 MGP_C57BL6NJ_G0025600.1 mouse_genomes_project 19 45918183 45921312 - MGP_C57BL6NJ_P0052380 Lbx1 protein_coding protein_coding MGP_C57BL6NJ_T0101434.1 MGP_C57BL6NJ_G0039480.1 mouse_genomes_project 19 6113256 6113328 + Gm24452 snoRNA snoRNA MGP_C57BL6NJ_T0051023.1 MGP_C57BL6NJ_G0025126.1 mouse_genomes_project 19 2522565 2537843 - MGP_C57BL6NJ_P0051023 Snx32 protein_coding protein_coding MGP_C57BL6NJ_T0007277.1 MGP_C57BL6NJ_G0005973.1 mouse_genomes_project 19 54487521 54495690 + 1700054A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0007278.1 MGP_C57BL6NJ_G0005973.1 mouse_genomes_project 19 54487555 54495690 + 1700054A03Rik lincRNA lincRNA MGP_C57BL6NJ_T0052345.1 MGP_C57BL6NJ_G0025587.1 mouse_genomes_project 19 45125388 45136629 - MGP_C57BL6NJ_P0052345 Gm20538 protein_coding protein_coding MGP_C57BL6NJ_T0099065.1 MGP_C57BL6NJ_G0037129.1 mouse_genomes_project 19 43605367 43605475 - Gm22135 rRNA rRNA MGP_C57BL6NJ_T0052696.1 MGP_C57BL6NJ_G0025696.1 mouse_genomes_project 19 60717010 60787680 - MGP_C57BL6NJ_P0052696 Hspa12a protein_coding protein_coding MGP_C57BL6NJ_T0001151.1 MGP_C57BL6NJ_G0001057.1 mouse_genomes_project 19 37472018 37473766 - TEC TEC MGP_C57BL6NJ_T0004026.1 MGP_C57BL6NJ_G0003593.1 mouse_genomes_project 19 48556160 48568471 - Gm16068 antisense antisense MGP_C57BL6NJ_T0050781.1 MGP_C57BL6NJ_G0025050.1 mouse_genomes_project 19 813923 817216 + MGP_C57BL6NJ_P0050781 Acy3 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052291.1 MGP_C57BL6NJ_G0025567.1 mouse_genomes_project 19 44085901 44089469 + MGP_C57BL6NJ_P0052291 Nkx2-3 protein_coding protein_coding MGP_C57BL6NJ_T0051591.1 MGP_C57BL6NJ_G0025288.1 mouse_genomes_project 19 8993711 9004105 - MGP_C57BL6NJ_P0051591 Ms4a12 protein_coding protein_coding MGP_C57BL6NJ_T0052336.1 MGP_C57BL6NJ_G0025581.1 mouse_genomes_project 19 44737103 44780852 + MGP_C57BL6NJ_P0052336 Scd3 protein_coding protein_coding MGP_C57BL6NJ_T0052011.1 MGP_C57BL6NJ_G0025469.1 mouse_genomes_project 19 33871692 33921229 + MGP_C57BL6NJ_P0052011 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052012.1 MGP_C57BL6NJ_G0025469.1 mouse_genomes_project 19 33871961 33912338 + MGP_C57BL6NJ_P0052012 protein_coding protein_coding MGP_C57BL6NJ_T0052013.1 MGP_C57BL6NJ_G0025469.1 mouse_genomes_project 19 33898347 33916756 + protein_coding retained_intron MGP_C57BL6NJ_T0052014.1 MGP_C57BL6NJ_G0025469.1 mouse_genomes_project 19 33913601 33915193 + protein_coding processed_transcript MGP_C57BL6NJ_T0051728.1 MGP_C57BL6NJ_G0025368.1 mouse_genomes_project 19 11943248 11944273 - MGP_C57BL6NJ_P0051728 Olfr1500 protein_coding protein_coding MGP_C57BL6NJ_T0051099.1 MGP_C57BL6NJ_G0025153.1 mouse_genomes_project 19 3147739 3149020 + MGP_C57BL6NJ_P0051099 Znhit2 protein_coding protein_coding MGP_C57BL6NJ_T0051525.1 MGP_C57BL6NJ_G0025262.1 mouse_genomes_project 19 8193782 8228756 - MGP_C57BL6NJ_P0051525 Sdhaf2 protein_coding protein_coding MGP_C57BL6NJ_T0051908.1 MGP_C57BL6NJ_G0025432.1 mouse_genomes_project 19 28176268 28202902 + MGP_C57BL6NJ_P0051908 Cdc37l1 protein_coding protein_coding MGP_C57BL6NJ_T0051909.1 MGP_C57BL6NJ_G0025432.1 mouse_genomes_project 19 28176312 28202910 + MGP_C57BL6NJ_P0051909 Cdc37l1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0007292.1 MGP_C57BL6NJ_G0005983.1 mouse_genomes_project 19 62271140 62272869 + Gm28351 lincRNA lincRNA MGP_C57BL6NJ_T0051524.1 MGP_C57BL6NJ_G0025261.1 mouse_genomes_project 19 8167582 8176223 - MGP_C57BL6NJ_P0051524 Ppp1r32 protein_coding protein_coding MGP_C57BL6NJ_T0051368.1 MGP_C57BL6NJ_G0025210.1 mouse_genomes_project 19 4923394 4966332 - MGP_C57BL6NJ_P0051368 Slc22a19 protein_coding protein_coding MGP_C57BL6NJ_T0051369.1 MGP_C57BL6NJ_G0025210.1 mouse_genomes_project 19 4927447 4966301 - Slc22a19 protein_coding retained_intron MGP_C57BL6NJ_T0051370.1 MGP_C57BL6NJ_G0025210.1 mouse_genomes_project 19 4961713 4966332 - Slc22a19 protein_coding retained_intron MGP_C57BL6NJ_T0051718.1 MGP_C57BL6NJ_G0025358.1 mouse_genomes_project 19 11532305 11533250 - MGP_C57BL6NJ_P0051718 Olfr1472 protein_coding protein_coding MGP_C57BL6NJ_T0051687.1 MGP_C57BL6NJ_G0025335.1 mouse_genomes_project 19 10705535 10711213 + MGP_C57BL6NJ_P0051687 Olfr1443 protein_coding protein_coding MGP_C57BL6NJ_T0050902.1 MGP_C57BL6NJ_G0025081.1 mouse_genomes_project 19 1551216 1555099 - MGP_C57BL6NJ_P0050902 Lrfn4 protein_coding protein_coding MGP_C57BL6NJ_T0050903.1 MGP_C57BL6NJ_G0025081.1 mouse_genomes_project 19 1551223 1554934 - MGP_C57BL6NJ_P0050903 Lrfn4 protein_coding protein_coding MGP_C57BL6NJ_T0052117.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38614720 38667712 + Plce1 protein_coding processed_transcript MGP_C57BL6NJ_T0052118.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38614732 38944088 + MGP_C57BL6NJ_P0052118 Plce1 protein_coding protein_coding MGP_C57BL6NJ_T0052119.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38645743 38852457 + MGP_C57BL6NJ_P0052119 Plce1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052120.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38667842 38945688 + MGP_C57BL6NJ_P0052120 Plce1 protein_coding protein_coding MGP_C57BL6NJ_T0052121.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38667854 38943453 + MGP_C57BL6NJ_P0052121 Plce1 protein_coding protein_coding MGP_C57BL6NJ_T0052122.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38732124 38798724 + MGP_C57BL6NJ_P0052122 Plce1 protein_coding protein_coding MGP_C57BL6NJ_T0052123.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38858221 38944627 + MGP_C57BL6NJ_P0052123 Plce1 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0052124.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38877922 38944246 + Plce1 protein_coding retained_intron MGP_C57BL6NJ_T0052125.1 MGP_C57BL6NJ_G0025508.1 mouse_genomes_project 19 38892193 38908690 + Plce1 protein_coding retained_intron MGP_C57BL6NJ_T0050853.1 MGP_C57BL6NJ_G0025069.1 mouse_genomes_project 19 1070989 1074256 + MGP_C57BL6NJ_P0050853 Ppp1ca protein_coding protein_coding MGP_C57BL6NJ_T0051915.1 MGP_C57BL6NJ_G0025436.1 mouse_genomes_project 19 28541775 28547326 - MGP_C57BL6NJ_P0051915 Insl6 protein_coding protein_coding MGP_C57BL6NJ_T0013705.1 MGP_C57BL6NJ_G0011750.1 mouse_genomes_project 19 19229148 19229832 - processed_pseudogene processed_pseudogene MGP_C57BL6NJ_T0052016.1 MGP_C57BL6NJ_G0025471.1 mouse_genomes_project 19 33974320 34011963 + MGP_C57BL6NJ_P0052016 Fas protein_coding protein_coding MGP_C57BL6NJ_T0052017.1 MGP_C57BL6NJ_G0025471.1 mouse_genomes_project 19 33974320 33992984 + MGP_C57BL6NJ_P0052017 Fas protein_coding protein_coding MGP_C57BL6NJ_T0052656.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58800812 58988305 - MGP_C57BL6NJ_P0052656 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052657.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58800969 58889537 - MGP_C57BL6NJ_P0052657 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052658.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58801346 58889537 - MGP_C57BL6NJ_P0052658 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052659.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58801353 58969904 - MGP_C57BL6NJ_P0052659 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052660.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58804362 59014002 - MGP_C57BL6NJ_P0052660 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052661.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58804497 58889535 - MGP_C57BL6NJ_P0052661 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052662.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58804558 58889441 - MGP_C57BL6NJ_P0052662 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052663.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58804763 58969729 - MGP_C57BL6NJ_P0052663 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052664.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58805045 59014534 - MGP_C57BL6NJ_P0052664 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052665.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58805083 58988238 - MGP_C57BL6NJ_P0052665 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052666.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58805219 58969664 - MGP_C57BL6NJ_P0052666 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052667.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58805261 58969769 - MGP_C57BL6NJ_P0052667 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052668.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58805330 59096631 - Ablim1 protein_coding retained_intron MGP_C57BL6NJ_T0052669.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58807510 58815302 - Ablim1 protein_coding processed_transcript MGP_C57BL6NJ_T0052670.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58809117 58813006 - Ablim1 protein_coding retained_intron MGP_C57BL6NJ_T0052671.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58829004 58907076 - Ablim1 protein_coding retained_intron MGP_C57BL6NJ_T0052672.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58846296 58907045 - Ablim1 protein_coding processed_transcript MGP_C57BL6NJ_T0052673.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58886549 58889552 - Ablim1 protein_coding processed_transcript MGP_C57BL6NJ_T0052674.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58902631 58908093 - Ablim1 protein_coding processed_transcript MGP_C57BL6NJ_T0052675.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58902973 59096623 - MGP_C57BL6NJ_P0052675 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0052676.1 MGP_C57BL6NJ_G0025686.1 mouse_genomes_project 19 58903213 58954564 - MGP_C57BL6NJ_P0052676 Ablim1 protein_coding protein_coding MGP_C57BL6NJ_T0051501.1 MGP_C57BL6NJ_G0025254.1 mouse_genomes_project 19 7851517 7865500 + MGP_C57BL6NJ_P0051501 Fads1 protein_coding protein_coding MGP_C57BL6NJ_T0051034.1 MGP_C57BL6NJ_G0025133.1 mouse_genomes_project 19 2702617 2716489 - MGP_C57BL6NJ_P0051034 Sipa1 protein_coding protein_coding MGP_C57BL6NJ_T0051035.1 MGP_C57BL6NJ_G0025133.1 mouse_genomes_project 19 2702617 2716489 - MGP_C57BL6NJ_P0051035 Sipa1 protein_coding protein_coding MGP_C57BL6NJ_T0051036.1 MGP_C57BL6NJ_G0025133.1 mouse_genomes_project 19 2702617 2716489 - MGP_C57BL6NJ_P0051036 Sipa1 protein_coding protein_coding MGP_C57BL6NJ_T0051037.1 MGP_C57BL6NJ_G0025133.1 mouse_genomes_project 19 2702617 2716489 - MGP_C57BL6NJ_P0051037 Sipa1 protein_coding protein_coding MGP_C57BL6NJ_T0051477.1 MGP_C57BL6NJ_G0025241.1 mouse_genomes_project 19 6377004 6391516 + MGP_C57BL6NJ_P0051477 Tut1 protein_coding protein_coding MGP_C57BL6NJ_T0051589.1 MGP_C57BL6NJ_G0025287.1 mouse_genomes_project 19 8953464 8981832 - MGP_C57BL6NJ_P0051589 Ms4a13 protein_coding protein_coding MGP_C57BL6NJ_T0051590.1 MGP_C57BL6NJ_G0025287.1 mouse_genomes_project 19 8953465 8981846 - MGP_C57BL6NJ_P0051590 Ms4a13 protein_coding protein_coding MGP_C57BL6NJ_T0052269.1 MGP_C57BL6NJ_G0025561.1 mouse_genomes_project 19 43006191 43031644 - MGP_C57BL6NJ_P0052269 Loxl4 protein_coding protein_coding MGP_C57BL6NJ_T0052270.1 MGP_C57BL6NJ_G0025561.1 mouse_genomes_project 19 43007315 43031644 - MGP_C57BL6NJ_P0052270 Loxl4 protein_coding protein_coding MGP_C57BL6NJ_T0052271.1 MGP_C57BL6NJ_G0025561.1 mouse_genomes_project 19 43007543 43020741 - MGP_C57BL6NJ_P0052271 Loxl4 protein_coding protein_coding MGP_C57BL6NJ_T0052272.1 MGP_C57BL6NJ_G0025561.1 mouse_genomes_project 19 43013762 43015531 - Loxl4 protein_coding processed_transcript MGP_C57BL6NJ_T0052273.1 MGP_C57BL6NJ_G0025561.1 mouse_genomes_project 19 43019818 43031603 - MGP_C57BL6NJ_P0052273 Loxl4 protein_coding protein_coding MGP_C57BL6NJ_T0052701.1 MGP_C57BL6NJ_G0025698.1 mouse_genomes_project 19 60912821 61015045 - MGP_C57BL6NJ_P0052701 Shtn1 protein_coding protein_coding MGP_C57BL6NJ_T0052205.1 MGP_C57BL6NJ_G0025540.1 mouse_genomes_project 19 41955143 41959034 + MGP_C57BL6NJ_P0052205 AI606181 protein_coding protein_coding MGP_C57BL6NJ_T0052343.1 MGP_C57BL6NJ_G0025586.1 mouse_genomes_project 19 45099021 45129628 - MGP_C57BL6NJ_P0052343 Sec31b protein_coding protein_coding MGP_C57BL6NJ_T0052344.1 MGP_C57BL6NJ_G0025586.1 mouse_genomes_project 19 45099356 45102306 - MGP_C57BL6NJ_P0052344 Sec31b protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0050831.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026455 1028341 + MGP_C57BL6NJ_P0050831 protein_coding protein_coding MGP_C57BL6NJ_T0050832.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026464 1027391 + protein_coding retained_intron MGP_C57BL6NJ_T0050833.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026468 1027471 + protein_coding retained_intron MGP_C57BL6NJ_T0050834.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026497 1029336 + protein_coding processed_transcript MGP_C57BL6NJ_T0050835.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026500 1028090 + protein_coding retained_intron MGP_C57BL6NJ_T0050836.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1026543 1031882 + MGP_C57BL6NJ_P0050836 protein_coding unknown_likely_coding MGP_C57BL6NJ_T0050837.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1028379 1030651 + protein_coding retained_intron MGP_C57BL6NJ_T0050838.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1029206 1031287 + protein_coding retained_intron MGP_C57BL6NJ_T0050839.1 MGP_C57BL6NJ_G0025064.1 mouse_genomes_project 19 1029416 1031504 + protein_coding retained_intron MGP_C57BL6NJ_T0051356.1 MGP_C57BL6NJ_G0025206.1 mouse_genomes_project 19 4733515 4784334 + MGP_C57BL6NJ_P0051356 Atl3 protein_coding protein_coding MGP_C57BL6NJ_T0051357.1 MGP_C57BL6NJ_G0025206.1 mouse_genomes_project 19 4733913 4784334 + MGP_C57BL6NJ_P0051357 Atl3 protein_coding protein_coding MGP_C57BL6NJ_T0050973.1 MGP_C57BL6NJ_G0025108.1 mouse_genomes_project 19 2122142 2278523 - MGP_C57BL6NJ_P0050973 Pacs1 protein_coding protein_coding MGP_C57BL6NJ_T0010540.1 MGP_C57BL6NJ_G0008625.1 mouse_genomes_project 19 42682239 42682328 - Mir3085 miRNA miRNA MGP_C57BL6NJ_T0052198.1 MGP_C57BL6NJ_G0025535.1 mouse_genomes_project 19 41423882 41552553 - MGP_C57BL6NJ_P0052198 Tll2 protein_coding protein_coding MGP_C57BL6NJ_T0052199.1 MGP_C57BL6NJ_G0025535.1 mouse_genomes_project 19 41423882 41552553 - MGP_C57BL6NJ_P0052199 Tll2 protein_coding protein_coding MGP_C57BL6NJ_T0102988.1 MGP_C57BL6NJ_G0040782.1 mouse_genomes_project 19 33054220 33317386 - unprocessed_pseudogene unprocessed_pseudogene MGP_C57BL6NJ_T0051795.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20296781 20371672 - MGP_C57BL6NJ_P0051795 1110059E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0051796.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20314532 20371652 - MGP_C57BL6NJ_P0051796 1110059E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0051797.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20314923 20371744 - MGP_C57BL6NJ_P0051797 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051798.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20315392 20349615 - MGP_C57BL6NJ_P0051798 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051799.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20315547 20371861 - MGP_C57BL6NJ_P0051799 1110059E24Rik protein_coding protein_coding MGP_C57BL6NJ_T0051800.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20316036 20321132 - 1110059E24Rik protein_coding processed_transcript MGP_C57BL6NJ_T0051801.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20316048 20371554 - MGP_C57BL6NJ_P0051801 1110059E24Rik protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0051802.1 MGP_C57BL6NJ_G0025397.1 mouse_genomes_project 19 20332011 20371737 - 1110059E24Rik protein_coding retained_intron MGP_C57BL6NJ_T0050898.1 MGP_C57BL6NJ_G0025079.1 mouse_genomes_project 19 1423412 1425206 - MGP_C57BL6NJ_P0050898 2010003K11Rik protein_coding protein_coding MGP_C57BL6NJ_T0052493.1 MGP_C57BL6NJ_G0025633.1 mouse_genomes_project 19 47909980 47921698 + MGP_C57BL6NJ_P0052493 Ina protein_coding protein_coding MGP_C57BL6NJ_T0010549.1 MGP_C57BL6NJ_G0008634.1 mouse_genomes_project 19 54410626 54410727 - Mir6407 miRNA miRNA MGP_C57BL6NJ_T0052405.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46547636 46550097 - MGP_C57BL6NJ_P0052405 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052406.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46548143 46575301 - Kcnip2 protein_coding retained_intron MGP_C57BL6NJ_T0052407.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46548143 46575301 - MGP_C57BL6NJ_P0052407 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052408.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46548143 46575340 - MGP_C57BL6NJ_P0052408 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052409.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46549146 46571570 - MGP_C57BL6NJ_P0052409 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052410.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46549245 46575304 - MGP_C57BL6NJ_P0052410 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052411.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46549467 46575112 - MGP_C57BL6NJ_P0052411 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052412.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46549467 46552867 - MGP_C57BL6NJ_P0052412 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052413.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46549788 46575082 - MGP_C57BL6NJ_P0052413 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0052414.1 MGP_C57BL6NJ_G0025608.1 mouse_genomes_project 19 46552146 46554207 - MGP_C57BL6NJ_P0052414 Kcnip2 protein_coding protein_coding MGP_C57BL6NJ_T0050941.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1899517 1913598 - MGP_C57BL6NJ_P0050941 Peli3 protein_coding protein_coding MGP_C57BL6NJ_T0050942.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1900722 1913633 - MGP_C57BL6NJ_P0050942 Peli3 protein_coding protein_coding MGP_C57BL6NJ_T0050943.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1903941 1907584 - Peli3 protein_coding retained_intron MGP_C57BL6NJ_T0050944.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1903967 1913604 - Peli3 protein_coding processed_transcript MGP_C57BL6NJ_T0050945.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1903971 1913579 - MGP_C57BL6NJ_P0050945 Peli3 protein_coding protein_coding MGP_C57BL6NJ_T0050946.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1903978 1913573 - Peli3 protein_coding processed_transcript MGP_C57BL6NJ_T0050947.1 MGP_C57BL6NJ_G0025095.1 mouse_genomes_project 19 1912105 1913552 - Peli3 protein_coding retained_intron MGP_C57BL6NJ_T0051786.1 MGP_C57BL6NJ_G0025393.1 mouse_genomes_project 19 19436560 19619783 - MGP_C57BL6NJ_P0051786 Tmc1 protein_coding protein_coding MGP_C57BL6NJ_T0051051.1 MGP_C57BL6NJ_G0025136.1 mouse_genomes_project 19 2756419 2759154 + MGP_C57BL6NJ_P0051051 Kcnk7 protein_coding protein_coding MGP_C57BL6NJ_T0052583.1 MGP_C57BL6NJ_G0025668.1 mouse_genomes_project 19 56678022 56715762 - MGP_C57BL6NJ_P0052583 Gpam protein_coding unknown_likely_coding MGP_C57BL6NJ_T0051540.1 MGP_C57BL6NJ_G0025272.1 mouse_genomes_project 19 8434232 8458286 - MGP_C57BL6NJ_P0051540 Cd5 protein_coding protein_coding MGP_C57BL6NJ_T0052031.1 MGP_C57BL6NJ_G0025481.1 mouse_genomes_project 19 34586386 34657724 - MGP_C57BL6NJ_P0052031 Pank1 protein_coding protein_coding MGP_C57BL6NJ_T0052032.1 MGP_C57BL6NJ_G0025481.1 mouse_genomes_project 19 34586387 34656186 - MGP_C57BL6NJ_P0052032 Pank1 protein_coding protein_coding MGP_C57BL6NJ_T0004001.1 MGP_C57BL6NJ_G0003575.1 mouse_genomes_project 19 3657996 3659297 - Gm14964 antisense antisense MGP_C57BL6NJ_T0004002.1 MGP_C57BL6NJ_G0003575.1 mouse_genomes_project 19 3658074 3659074 - Gm14964 antisense antisense MGP_C57BL6NJ_T0050992.1 MGP_C57BL6NJ_G0025119.1 mouse_genomes_project 19 2470853 2480774 + MGP_C57BL6NJ_P0050992 Fosl1 protein_coding protein_coding MGP_C57BL6NJ_T0051137.1 MGP_C57BL6NJ_G0025159.1 mouse_genomes_project 19 3175168 3181963 + MGP_C57BL6NJ_P0051137 Cdca5 protein_coding protein_coding MGP_C57BL6NJ_T0051138.1 MGP_C57BL6NJ_G0025159.1 mouse_genomes_project 19 3175936 3181963 + Cdca5 protein_coding processed_transcript MGP_C57BL6NJ_T0051139.1 MGP_C57BL6NJ_G0025159.1 mouse_genomes_project 19 3176012 3181963 + Cdca5 protein_coding processed_transcript MGP_C57BL6NJ_T0051311.1 MGP_C57BL6NJ_G0025193.1 mouse_genomes_project 19 4185914 4188828 + MGP_C57BL6NJ_P0051311 Trpt1 protein_coding protein_coding MGP_C57BL6NJ_T0052463.1 MGP_C57BL6NJ_G0025621.1 mouse_genomes_project 19 47189077 47209951 + MGP_C57BL6NJ_P0052463 Mfsd13a protein_coding protein_coding MGP_C57BL6NJ_T0052464.1 MGP_C57BL6NJ_G0025621.1 mouse_genomes_project 19 47189149 47209941 + MGP_C57BL6NJ_P0052464 Mfsd13a protein_coding nonsense_mediated_decay MGP_C57BL6NJ_T0052465.1 MGP_C57BL6NJ_G0025621.1 mouse_genomes_project 19 47201440 47209941 + Mfsd13a protein_coding retained_intron MGP_C57BL6NJ_T0051628.1 MGP_C57BL6NJ_G0025299.1 mouse_genomes_project 19 9387847 9400950 + MGP_C57BL6NJ_P0051628 Ms4a4d protein_coding protein_coding MGP_C57BL6NJ_T0098853.1 MGP_C57BL6NJ_G0036917.1 mouse_genomes_project 19 42208590 42209232 + pseudogene pseudogene MGP_C57BL6NJ_T0051455.1 MGP_C57BL6NJ_G0025233.1 mouse_genomes_project 19 6304409 6313302 + MGP_C57BL6NJ_P0051455 Lbhd1 protein_coding protein_coding MGP_C57BL6NJ_T0051456.1 MGP_C57BL6NJ_G0025233.1 mouse_genomes_project 19 6304601 6307719 + Lbhd1 protein_coding retained_intron MGP_C57BL6NJ_T0051457.1 MGP_C57BL6NJ_G0025233.1 mouse_genomes_project 19 6304607 6307936 + MGP_C57BL6NJ_P0051457 Lbhd1 protein_coding protein_coding MGP_C57BL6NJ_T0051464.1 MGP_C57BL6NJ_G0025233.1 mouse_genomes_project 19 6309955 6311333 + Lbhd1 protein_coding processed_transcript MGP_C57BL6NJ_T0052694.1 MGP_C57BL6NJ_G0025695.1 mouse_genomes_project 19 60705955 60714606 - MGP_C57BL6NJ_P0052694 1700019N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0052695.1 MGP_C57BL6NJ_G0025695.1 mouse_genomes_project 19 60706148 60713428 - MGP_C57BL6NJ_P0052695 1700019N19Rik protein_coding protein_coding MGP_C57BL6NJ_T0050780.1 MGP_C57BL6NJ_G0025049.1 mouse_genomes_project 19 797756 808993 + MGP_C57BL6NJ_P0050780 Aldh3b2 protein_coding protein_coding MGP_C57BL6NJ_T0051487.1 MGP_C57BL6NJ_G0025245.1 mouse_genomes_project 19 6558372 6590066 - MGP_C57BL6NJ_P0051487 Asrgl1 protein_coding protein_coding MGP_C57BL6NJ_T0051488.1 MGP_C57BL6NJ_G0025245.1 mouse_genomes_project 19 6586885 6589961 - Asrgl1 protein_coding processed_transcript